sampleID	chrom	start	sampleID_normal	Sample_type	Group	end	ref	obs	Variant_type	Callers	NumCallers	Tumor_AF	Tumor_DP	RNA_DP	RNA.alternative.count	RNA_AF	Func.refGene	Gene.refGene	ExonicFunc.refGene	AAChange.refGene	cytoBand	CNA_coordinates	Total_CN	Major_CN	Minor_CN	Purity	Ploidy	CNV_calling_comment	Multiplicity	CCF	SciClone_cluster	SciClone_cluster_prob	Trinuc_context	Class	SSR_motif	SSR_length	SSR_sequence	Indel_size
SSC	chr1	4346756	12A2p6	cell line	sgMsh2	4346756	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	251	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C4132A:p.L1378I	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	7.36E-09	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	4346883	12A2p6	cell line	sgMsh2	4346883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	274	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.T4005C:p.T1335T	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.73666981	2	0.9778847	CAG	synonymous	NA	NA	NA	NA
SSC	chr1	5598941	12A2p6	cell line	sgMsh2	5598941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	136	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon3:c.A609G:p.E203E,Oprk1:NM_011011:exon3:c.A609G:p.E203E"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	0.9998808	AAG	synonymous	NA	NA	NA	NA
SSC	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	110	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	6263166	12A2p6	cell line	sgMsh2	6263166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	109	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.T4227C:p.C1409C	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	GTG	synonymous	NA	NA	NA	NA
SSC	chr1	6820123	12A2p6	cell line	sgMsh2	6820123	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	55	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon11:c.A1778C:p.K593T,St18:NM_001244693:exon12:c.A1778C:p.K593T,St18:NM_001244692:exon13:c.A1778C:p.K593T"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9153393	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	7169594	12A2p6	cell line	sgMsh2	7169594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	38	0	0	NA	exonic	Pcmtd1	nonsynonymous SNV	Pcmtd1:NM_183028:exon6:c.G786T:p.E262D	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9835398	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	180	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999991	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	9690155	12A2p6	cell line	sgMsh2	9690155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	86	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon4:c.T217C:p.C73R,Mybl1:NM_008651:exon4:c.T217C:p.C73R"	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	10037740	12A2p6	cell line	sgMsh2	10037740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	91	0	0	NA	exonic	Cops5	nonsynonymous SNV	Cops5:NM_013715:exon1:c.A73G:p.I25V	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	0.9985371	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	11185964	12A2p6	cell line	sgMsh2	11185964	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	81	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon29:c.T3558G:p.G1186G	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9991543	GTC	synonymous	NA	NA	NA	NA
SSC	chr1	13125490	12A2p6	cell line	sgMsh2	13125490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	150	0	0	NA	exonic	Prdm14	nonsynonymous SNV	Prdm14:NM_001081209:exon2:c.A346G:p.T116A	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.999993	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	18130241	12A2p6	cell line	sgMsh2	18130241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	130	0	0	NA	exonic	Crisp4	synonymous SNV	"Crisp4:NM_001347048:exon4:c.T219C:p.S73S,Crisp4:NM_001347047:exon5:c.T336C:p.S112S"	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	AAC	synonymous	NA	NA	NA	NA
SSC	chr1	20523881	12A2p6	cell line	sgMsh2	20523881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	185	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon32:c.T4007C:p.V1336A	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	20935005	12A2p6	cell line	sgMsh2	20935005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	88	0	0	NA	exonic	Paqr8	nonsynonymous SNV	"Paqr8:NM_001355122:exon3:c.T382G:p.L128V,Paqr8:NM_028829:exon3:c.T382G:p.L128V"	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	23370041	12A2p6	cell line	sgMsh2	23370041	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	145	0	0	NA	exonic	Ogfrl1	frameshift deletion	"Ogfrl1:NM_001379083:exon5:c.890delA:p.K297Rfs*82,Ogfrl1:NM_001081079:exon7:c.1103delA:p.K368Rfs*82,Ogfrl1:NM_001379082:exon7:c.1106delA:p.K369Rfs*82"	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	C	5	CCCCC	-1
SSC	chr1	26684572	12A2p6	cell line	sgMsh2	26684572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	209	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C1526T:p.T509I	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9999985	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	28777461	12A2p6	cell line	sgMsh2	28777461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	144	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A1489G:p.T497A	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999821	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	30944665	12A2p6	cell line	sgMsh2	30944665	T	C	SNV	Mutect2;Vardict	2	0.046	113	0	0	NA	exonic	Ptp4a1	nonsynonymous SNV	Ptp4a1:NM_011200:exon4:c.A200G:p.D67G	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.197016344	3	0.9999993	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	20	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.93427	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	32	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9752483	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	33783881	12A2p6	cell line	sgMsh2	33783881	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	201	0	0	NA	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001359274:exon5:c.G396T:p.Q132H,Zfp451:NM_001359275:exon5:c.G396T:p.Q132H,Zfp451:NM_133817:exon5:c.G396T:p.Q132H"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.132771884	3	1	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	34182130	12A2p6	cell line	sgMsh2	34182130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	154	0	0	NA	exonic	Dst	synonymous SNV	Dst:NM_010081:exon24:c.A7014G:p.E2338E	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.9672417	AAC	synonymous	NA	NA	NA	NA
SSC	chr1	34229207	12A2p6	cell line	sgMsh2	34229207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	86	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_133833:exon52:c.A9687G:p.T3229T,Dst:NM_134448:exon57:c.A15729G:p.T5243T,Dst:NM_001276764:exon60:c.A16263G:p.T5421T"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9988217	CAG	synonymous	NA	NA	NA	NA
SSC	chr1	34537173	12A2p6	cell line	sgMsh2	34537173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	46	0	0	NA	exonic	Cfc1	nonsynonymous SNV	Cfc1:NM_007685:exon4:c.T313C:p.C105R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.990486	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	36104040	12A2p6	cell line	sgMsh2	36104040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	88	0	0	NA	exonic	Hs6st1	nonsynonymous SNV	Hs6st1:NM_015818:exon2:c.A1055G:p.K352R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	36316314	12A2p6	cell line	sgMsh2	36316314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	37	0	0	NA	exonic	Arid5a	nonsynonymous SNV	"Arid5a:NM_001172205:exon2:c.C110A:p.P37H,Arid5a:NM_001172206:exon2:c.C107A:p.P36H,Arid5a:NM_145996:exon2:c.C110A:p.P37H,Arid5a:NM_001290726:exon3:c.C197A:p.P66H"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9823777	CCC	nonsynonymous	CCCA	8	CCCACCCA	NA
SSC	chr1	36808131	12A2p6	cell line	sgMsh2	36808131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	75	0	0	NA	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon31:c.A3885G:p.P1295P	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9950821	GTG	synonymous	NA	NA	NA	NA
SSC	chr1	36811512	12A2p6	cell line	sgMsh2	36811512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	113	0	0	NA	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon28:c.A3090G:p.E1030E	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	TTT	synonymous	NA	NA	NA	NA
SSC	chr1	37261918	12A2p6	cell line	sgMsh2	37261918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	65	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon6:c.A1718G:p.Y573C,Cnga3:NM_001282010:exon8:c.A1832G:p.Y611C"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.994348	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	37807068	12A2p6	cell line	sgMsh2	37807068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	101	0	0	NA	exonic	Tsga10	nonsynonymous SNV	"Tsga10:NM_001290721:exon12:c.A976G:p.I326V,Tsga10:NM_001290720:exon13:c.A976G:p.I326V,Tsga10:NM_207228:exon13:c.A976G:p.I326V"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997888	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	39539904	12A2p6	cell line	sgMsh2	39539904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	151	0	0	NA	exonic	Cnot11	synonymous SNV	Cnot11:NM_028043:exon4:c.A849G:p.P283P	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9997059	CAC	synonymous	CCA	8	CCACCACC	NA
SSC	chr1	39672272	12A2p6	cell line	sgMsh2	39672272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	75	0	0	NA	exonic	Rfx8	nonsynonymous SNV	Rfx8:NM_001145660:exon13:c.A1196G:p.K399R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9987181	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	44142866	12A2p6	cell line	sgMsh2	44142866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	114	0	0	NA	exonic	Bivm	synonymous SNV	"Bivm:NM_144558:exon10:c.T1233C:p.H411H,Bivm:NM_001357046:exon11:c.T1233C:p.H411H,Bivm:NM_001357047:exon11:c.T1233C:p.H411H,Bivm:NM_001357048:exon11:c.T1233C:p.H411H"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9279128	ATT	synonymous	TTGCA	11	TTGCATTGCAT	NA
SSC	chr1	44142889	12A2p6	cell line	sgMsh2	44142889	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	122	0	0	NA	exonic	Bivm	nonsynonymous SNV	"Bivm:NM_144558:exon10:c.T1256G:p.L419R,Bivm:NM_001357046:exon11:c.T1256G:p.L419R,Bivm:NM_001357047:exon11:c.T1256G:p.L419R,Bivm:NM_001357048:exon11:c.T1256G:p.L419R"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.882290586	1	0.9938911	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	44206380	12A2p6	cell line	sgMsh2	44206380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	152	0	0	NA	exonic	Mettl21e	synonymous SNV	Mettl21e:NM_207281:exon5:c.A705G:p.K235K	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999939	CTT	synonymous	NA	NA	NA	NA
SSC	chr1	44708633	12A2p6	cell line	sgMsh2	44708633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	182	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon3:c.T45C:p.H15H	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999992	ATA	synonymous	NA	NA	NA	NA
SSC	chr1	44780994	12A2p6	cell line	sgMsh2	44780994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	132	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon9:c.T636G:p.P212P	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9993188	CTT	synonymous	NA	NA	NA	NA
SSC	chr1	45329099	12A2p6	cell line	sgMsh2	45329099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	69	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon13:c.G941A:p.G314E	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	45402107	12A2p6	cell line	sgMsh2	45402107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	92	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon30:c.A1997G:p.Q666R	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	46299840	12A2p6	cell line	sgMsh2	46299840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	84	0	0	NA	exonic	Dnah7b	synonymous SNV	Dnah7b:NM_001368717:exon53:c.A9915G:p.L3305L	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	TAC	synonymous	NA	NA	NA	NA
SSC	chr1	46455844	12A2p6	cell line	sgMsh2	46455844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	76	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon4:c.T231C:p.V77V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9988039	TTA	synonymous	A	5	AAAAA	NA
SSC	chr1	46524078	12A2p6	cell line	sgMsh2	46524078	A	G	SNV	Mutect2;MuSe;Vardict	3	0.059	231	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon15:c.A1787G:p.K596R	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.252694877	3	1.93E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	46775247	12A2p6	cell line	sgMsh2	46775247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	327	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon58:c.A10858G:p.M3620V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	1.07E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	51769071	12A2p6	cell line	sgMsh2	51769071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	73	0	0	NA	exonic	Myo1b	nonsynonymous SNV	"Myo1b:NM_001161817:exon22:c.A2315G:p.E772G,Myo1b:NM_001290982:exon22:c.A2315G:p.E772G,Myo1b:NM_010863:exon22:c.A2315G:p.E772G"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	52212343	12A2p6	cell line	sgMsh2	52212343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	94	0	0	NA	exonic	Gls	nonsynonymous SNV	"Gls:NM_001081081:exon6:c.T854C:p.V285A,Gls:NM_001113383:exon6:c.T854C:p.V285A"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	53567158	12A2p6	cell line	sgMsh2	53567158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	143	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3702C:p.V1234V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9990459	TAA	synonymous	NA	NA	NA	NA
SSC	chr1	53567203	12A2p6	cell line	sgMsh2	53567203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	144	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3657C:p.D1219D	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9999667	TAT	synonymous	NA	NA	NA	NA
SSC	chr1	55355724	12A2p6	cell line	sgMsh2	55355724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	104	0	0	NA	exonic	Boll	synonymous SNV	"Boll:NM_001367887:exon3:c.T181C:p.L61L,Boll:NM_001368767:exon3:c.T181C:p.L61L,Boll:NM_029267:exon3:c.T181C:p.L61L"	1qC1.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.770933522	1	0.6595508	AAA	synonymous	NA	NA	NA	NA
SSC	chr1	56891225	12A2p6	cell line	sgMsh2	56891225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	177	0	0	NA	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.A638C:p.N213T,Satb2:NM_001358580:exon7:c.A638C:p.N213T,Satb2:NM_001358581:exon7:c.A638C:p.N213T"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999989	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	57406795	12A2p6	cell line	sgMsh2	57406795	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.179	25	0	0	NA	exonic	Maip1	nonsynonymous SNV	Maip1:NM_001081181:exon1:c.T23C:p.L8P	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.766650558	1	0.7731881	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	58016226	12A2p6	cell line	sgMsh2	58016226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	121	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.T1268C:p.V423A,Sgo2a:NM_199007:exon7:c.T1568C:p.V523A"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	43	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9826353	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
SSC	chr1	58476438	12A2p6	cell line	sgMsh2	58476438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	223	0	0	NA	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon8:c.T766C:p.L256L,Orc2:NM_001271526:exon11:c.T910C:p.L304L,Orc2:NM_008765:exon11:c.T910C:p.L304L"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	4.54E-08	AAC	synonymous	NA	NA	NA	NA
SSC	chr1	59051047	12A2p6	cell line	sgMsh2	59051047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	192	0	0	NA	exonic	C2cd6	nonsynonymous SNV	"C2cd6:NM_026600:exon13:c.T1550C:p.L517P,C2cd6:NM_175200:exon13:c.T1550C:p.L517P"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.184167452	3	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	102	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	60978008	12A2p6	cell line	sgMsh2	60978008	T	-	Deletion	Strelka2;Vardict	2	0.1839	87	0	0	NA	exonic	Icos	frameshift deletion	Icos:NM_017480:exon1:c.50delT:p.L18fs*0	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.787637081	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr1	63585429	12A2p6	cell line	sgMsh2	63585429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	90	0	0	NA	exonic	Adam23	synonymous SNV	Adam23:NM_011780:exon25:c.C2415T:p.V805V	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9448735	TCC	synonymous	NA	NA	NA	NA
SSC	chr1	65388737	12A2p6	cell line	sgMsh2	65388737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	98	0	0	NA	exonic	Pth2r	nonsynonymous SNV	Pth2r:NM_139270:exon13:c.T1568C:p.V523A	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9997399	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	66672782	12A2p6	cell line	sgMsh2	66672782	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	88	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368825:exon53:c.G8067T:p.Q2689H,Unc80:NM_001368824:exon54:c.G8307T:p.Q2769H,Unc80:NM_175510:exon54:c.G8262T:p.Q2754H"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.492540861	2	0.9992149	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	70461128	12A2p6	cell line	sgMsh2	70461128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	146	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon6:c.T627C:p.P209P,Spag16:NM_029160:exon15:c.T1614C:p.P538P"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999907	CTA	synonymous	NA	NA	NA	NA
SSC	chr1	74191855	12A2p6	cell line	sgMsh2	74191855	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	81	0	0	NA	exonic	Cxcr1	stopgain	Cxcr1:NM_178241:exon2:c.1007delT:p.L336fs*0	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
SSC	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	100	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.766650558	1	0.6336117	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	74594618	12A2p6	cell line	sgMsh2	74594618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	55	0	0	NA	exonic	Rnf25	frameshift deletion	"Rnf25:NM_001305230:exon9:c.731delA:p.K244Rfs*30,Rnf25:NM_021313:exon9:c.734delA:p.K245Rfs*30"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	186	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.71525499	2	0.9690734	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	74948459	12A2p6	cell line	sgMsh2	74948459	T	C	SNV	Mutect2;Vardict	2	0.042	128	0	0	NA	exonic	Ihh	nonsynonymous SNV	"Ihh:NM_001313683:exon2:c.A422G:p.E141G,Ihh:NM_010544:exon2:c.A422G:p.E141G"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.179884488	3	1.96E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	75274470	12A2p6	cell line	sgMsh2	75274470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	124	0	0	NA	exonic	Resp18	nonsynonymous SNV	Resp18:NM_009049:exon3:c.A271G:p.S91G	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	75402461	12A2p6	cell line	sgMsh2	75402461	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	50	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001173477:exon4:c.C322A:p.L108M,Speg:NM_001085370:exon7:c.C679A:p.L227M,Speg:NM_007463:exon9:c.C2884A:p.L962M,Speg:NM_001085371:exon10:c.C2566A:p.L856M"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9927756	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	75411103	12A2p6	cell line	sgMsh2	75411103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	74	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon15:c.C1982A:p.A661D,Speg:NM_007463:exon17:c.C4187A:p.A1396D"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.7303113	GCT	nonsynonymous	TGCTG	10	TGCTGTGCTG	NA
SSC	chr1	77374917	12A2p6	cell line	sgMsh2	77374917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	44	0	0	NA	exonic	Epha4	synonymous SNV	Epha4:NM_007936:exon16:c.A2700G:p.T900T	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9776662	CTG	synonymous	NA	NA	NA	NA
SSC	chr1	78443700	12A2p6	cell line	sgMsh2	78443700	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	145	0	0	NA	exonic	Farsb	nonsynonymous SNV	"Farsb:NM_001278075:exon16:c.T1553G:p.I518S,Farsb:NM_011811:exon16:c.T1553G:p.I518S"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.99999	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	79435569	12A2p6	cell line	sgMsh2	79435569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	138	0	0	NA	exonic	Scg2	nonsynonymous SNV	"Scg2:NM_009129:exon2:c.A1436C:p.Q479P,Scg2:NM_001310680:exon3:c.A1316C:p.Q439P"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999838	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	84159243	12A2p6	cell line	sgMsh2	84159243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	70	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon2:c.A166G:p.S56G	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	85248322	12A2p6	cell line	sgMsh2	85248322	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	260	0	0	NA	exonic	C130026I21Rik	frameshift deletion	"C130026I21Rik:NM_001037909:exon6:c.569delA:p.K190Sfs*6,C130026I21Rik:NM_175219:exon7:c.653delA:p.K218Sfs*6"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.937969118	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC	chr1	85550229	12A2p6	cell line	sgMsh2	85550229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	392	0	0	NA	exonic	Gm7592	synonymous SNV	Gm7592:NM_001378663:exon2:c.A543G:p.R181R	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	GAG	synonymous	NA	NA	NA	NA
SSC	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.483974933	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr1	85586282	12A2p6	cell line	sgMsh2	85586282	T	-	Deletion	Strelka2;Vardict	2	0.1839	310	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon7:c.753delA:p.K251Nfs*21,Sp110:NM_175397:exon8:c.753delA:p.K251Nfs*21"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.787637081	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr1	86110599	12A2p6	cell line	sgMsh2	86110599	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	142	0	0	NA	exonic	Htr2b	stopgain	Htr2b:NM_008311:exon2:c.T284A:p.L95X	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999877	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	86357432	12A2p6	cell line	sgMsh2	86357432	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	59	0	0	NA	exonic	Ncl	frameshift deletion	Ncl:NM_010880:exon3:c.156delA:p.G53Afs*30	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.955100974	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr1	87407650	12A2p6	cell line	sgMsh2	87407650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	129	0	0	NA	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon12:c.A1194G:p.E398E,Gigyf2:NM_146112:exon12:c.A1212G:p.E404E"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.770933522	1	0.6156205	AAC	synonymous	NA	NA	NA	NA
SSC	chr1	87683860	12A2p6	cell line	sgMsh2	87683860	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	143	0	0	NA	exonic	Inpp5d	frameshift deletion	"Inpp5d:NM_001110192:exon9:c.1030delA:p.I346Sfs*10,Inpp5d:NM_001110193:exon9:c.1033delA:p.I347Sfs*10,Inpp5d:NM_010566:exon9:c.1033delA:p.I347Sfs*10"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.646727566	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr1	87982016	12A2p6	cell line	sgMsh2	87982016	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	155	0	0	NA	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon13:c.T1715A:p.I572K,Usp40:NM_001198573:exon13:c.T1715A:p.I572K"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9999669	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	88228246	12A2p6	cell line	sgMsh2	88228246	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.045	773	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C99A:p.T33T	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.19273338	3	1	CCA	synonymous	NA	NA	NA	NA
SSC	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	369	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.209865236	3	1	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	91319076	12A2p6	cell line	sgMsh2	91319076	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	107	0	0	NA	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon11:c.A1108T:p.S370C	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	91370451	12A2p6	cell line	sgMsh2	91370451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	98	0	0	NA	exonic	Erfe	synonymous SNV	Erfe:NM_173395:exon5:c.T682C:p.L228L	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997399	CTT	synonymous	NA	NA	NA	NA
SSC	chr1	92573497	12A2p6	cell line	sgMsh2	92573497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	301	0	0	NA	exonic	Olfr1413	nonsynonymous SNV	Olfr1413:NM_147037:exon1:c.T325C:p.F109L	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	1.31E-08	CTT	nonsynonymous	TTC	8	TTCTTCTT	NA
SSC	chr1	92588592	12A2p6	cell line	sgMsh2	92588592	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	280	0	0	NA	exonic	Olfr1412	nonsynonymous SNV	Olfr1412:NM_146277:exon1:c.A261C:p.K87N	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9999926	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	92596593	12A2p6	cell line	sgMsh2	92596593	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	224	0	0	NA	exonic	Olfr1411	frameshift deletion	Olfr1411:NM_146490:exon1:c.73delG:p.G27Vfs*25	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.967949866	NA	NA	TGG	frameshift	G	8	GGGGGGGG	-1
SSC	chr1	93159815	12A2p6	cell line	sgMsh2	93159815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	53	0	0	NA	exonic	Mab21l4	synonymous SNV	"Mab21l4:NM_001159940:exon2:c.T315C:p.T105T,Mab21l4:NM_172411:exon2:c.T315C:p.T105T"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9941256	CAG	synonymous	NA	NA	NA	NA
SSC	chr1	93282827	12A2p6	cell line	sgMsh2	93282827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	63	0	0	NA	exonic	Sned1	nonsynonymous SNV	Sned1:NM_172463:exon21:c.G2849A:p.G950E	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	GGA	nonsynonymous	GGAT	8	GGATGGAT	NA
SSC	chr1	93335703	12A2p6	cell line	sgMsh2	93335703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	97	0	0	NA	exonic	Pask	synonymous SNV	Pask:NM_080850:exon3:c.T330C:p.R110R	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997213	CAC	synonymous	NA	NA	NA	NA
SSC	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	146	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999907	AAG	synonymous	NA	NA	NA	NA
SSC	chr1	93792853	12A2p6	cell line	sgMsh2	93792853	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	76	0	0	NA	exonic	Dtymk	nonsynonymous SNV	Dtymk:NM_001105667:exon5:c.C619A:p.L207M	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.646727566	2	0.09118245	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	95667162	12A2p6	cell line	sgMsh2	95667162	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	146	0	0	NA	exonic	St8sia4	nonsynonymous SNV	"St8sia4:NM_001159745:exon1:c.A100T:p.T34S,St8sia4:NM_009183:exon1:c.A100T:p.T34S"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999907	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	75	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.766650558	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr1	106004165	12A2p6	cell line	sgMsh2	106004165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	119	0	0	NA	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon3:c.T1096C:p.Y366H,Zcchc2:NM_001122676:exon3:c.T1096C:p.Y366H"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	107000780	12A2p6	cell line	sgMsh2	107000780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	130	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon8:c.T1129C:p.S377P	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	107159045	12A2p6	cell line	sgMsh2	107159045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	133	0	0	NA	exonic	Serpinb3b	synonymous SNV	Serpinb3b:NM_198680:exon3:c.A195G:p.T65T	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999771	TTG	synonymous	NA	NA	NA	NA
SSC	chr1	110052960	12A2p6	cell line	sgMsh2	110052960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	164	0	0	NA	exonic	Cdh7	nonsynonymous SNV	"Cdh7:NM_001316743:exon4:c.C617T:p.P206L,Cdh7:NM_172853:exon4:c.C617T:p.P206L,Cdh7:NM_001316744:exon5:c.C443T:p.P148L"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999973	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	110919620	12A2p6	cell line	sgMsh2	110919620	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	136	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon8:c.A1258C:p.I420L,Cdh19:NM_001356415:exon9:c.A1258C:p.I420L"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999552	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	110925064	12A2p6	cell line	sgMsh2	110925064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	158	0	0	NA	exonic	Cdh19	synonymous SNV	"Cdh19:NM_001081386:exon7:c.A1140G:p.G380G,Cdh19:NM_001356415:exon8:c.A1140G:p.G380G"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.999996	TTC	synonymous	NA	NA	NA	NA
SSC	chr1	115685184	12A2p6	cell line	sgMsh2	115685184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	446	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon1:c.A48G:p.S16S,Cntnap5a:NM_001371013:exon1:c.A48G:p.S16S"	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
SSC	chr1	119691821	12A2p6	cell line	sgMsh2	119691821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	170	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon17:c.T1524C:p.G508G	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999982	CAC	synonymous	NA	NA	NA	NA
SSC	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	78	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9989588	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	121557479	12A2p6	cell line	sgMsh2	121557479	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	159	0	0	NA	exonic	Ddx18	nonsynonymous SNV	Ddx18:NM_025860:exon10:c.A1531G:p.N511D	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.402598617	2	0.9757057	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.201	202	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9975852	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	83	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8695289	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	128193486	12A2p6	cell line	sgMsh2	128193486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	49	0	0	NA	exonic	R3hdm1	synonymous SNV	"R3hdm1:NM_001357482:exon18:c.T1755C:p.H585H,R3hdm1:NM_181750:exon18:c.T1755C:p.H585H"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9922605	ATA	synonymous	NA	NA	NA	NA
SSC	chr1	128236639	12A2p6	cell line	sgMsh2	128236639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	190	0	0	NA	exonic	R3hdm1	nonsynonymous SNV	"R3hdm1:NM_001357482:exon27:c.T3289C:p.S1097P,R3hdm1:NM_181750:exon27:c.T3289C:p.S1097P"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9876809	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	128291951	12A2p6	cell line	sgMsh2	128291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	111	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon13:c.A4960G:p.S1654G	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.599614961	2	0.9969375	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	128300744	12A2p6	cell line	sgMsh2	128300744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	132	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A3011G:p.N1004S	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999606	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	128304111	12A2p6	cell line	sgMsh2	128304111	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	70	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon7:c.A2000T:p.E667V	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	128348373	12A2p6	cell line	sgMsh2	128348373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	72	0	0	NA	exonic	Mcm6	nonsynonymous SNV	"Mcm6:NM_001313695:exon7:c.A1074G:p.I358M,Mcm6:NM_008567:exon7:c.A1074G:p.I358M"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9839977	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	130655982	12A2p6	cell line	sgMsh2	130655982	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	exonic	C4bp	nonsynonymous SNV	C4bp:NM_007576:exon3:c.C248T:p.T83I	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	130813146	12A2p6	cell line	sgMsh2	130813146	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.223	113	0	0	NA	exonic	Fcamr	nonsynonymous SNV	"Fcamr:NM_001170632:exon5:c.T1301G:p.M434R,Fcamr:NM_144960:exon5:c.T1133G:p.M378R"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9994946	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	72	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.8955758	GGC	synonymous	NA	NA	NA	NA
SSC	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	13	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9132873	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	134746867	12A2p6	cell line	sgMsh2	134746867	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	115	0	0	NA	exonic	Syt2	nonsynonymous SNV	"Syt2:NM_001355726:exon8:c.A1042C:p.I348L,Syt2:NM_009307:exon9:c.A1042C:p.I348L"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	134879721	12A2p6	cell line	sgMsh2	134879721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	114	0	0	NA	exonic	Ppp1r12b	nonsynonymous SNV	"Ppp1r12b:NM_001368829:exon8:c.A662G:p.N221S,Ppp1r12b:NM_001081307:exon9:c.A1166G:p.N389S,Ppp1r12b:NM_001368827:exon9:c.A1166G:p.N389S"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999143	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	134999360	12A2p6	cell line	sgMsh2	134999360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	116	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon12:c.A1090G:p.I364V	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	135301934	12A2p6	cell line	sgMsh2	135301934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	161	0	0	NA	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon6:c.A434G:p.Y145C,Timm17a:NM_001360858:exon6:c.A263G:p.Y88C,Timm17a:NM_011590:exon6:c.A500G:p.Y167C"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999967	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	136070638	12A2p6	cell line	sgMsh2	136070639	TT	AA	DBS	Mutect2;Vardict	2	0.25	63	0	0	NA	exonic	Cacna1s	nonframeshift substitution	"Cacna1s:NM_001081023:exon4:c.403_404AA:p.F135N,Cacna1s:NM_014193:exon4:c.403_404AA:p.F135N"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	138498589	12A2p6	cell line	sgMsh2	138498589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	155	0	0	NA	exonic	Nek7	nonsynonymous SNV	Nek7:NM_021605:exon9:c.A785C:p.H262P	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.999995	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	139432013	12A2p6	cell line	sgMsh2	139432013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	128	0	0	NA	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon5:c.T1480C:p.Y494H	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999676	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	139456816	12A2p6	cell line	sgMsh2	139456816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	126	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon2:c.T350C:p.L117P	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999627	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	139479633	12A2p6	cell line	sgMsh2	139479633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	85	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T6257C:p.M2086T	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993592	ATG	nonsynonymous	CACATG	12	CACATGCACATG	NA
SSC	chr1	139507581	12A2p6	cell line	sgMsh2	139507581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	172	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon4:c.T463C:p.L155L	1qF	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999985	TTT	synonymous	NA	NA	NA	NA
SSC	chr1	139810826	12A2p6	cell line	sgMsh2	139810826	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	217	0	0	NA	exonic	Cfhr2	synonymous SNV	Cfhr2:NM_001025575:exon6:c.A996G:p.V332V	1qF	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
SSC	chr1	140596025	12A2p6	cell line	sgMsh2	140596025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	202	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon27:c.T3262C:p.S1088P	1qF	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9999769	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	144139554	12A2p6	cell line	sgMsh2	144139554	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	exonic	Rgs13	nonsynonymous SNV	Rgs13:NM_153171:exon6:c.A424C:p.K142Q	1qF	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TTT	nonsynonymous	A	5	AAAAA	NA
SSC	chr1	151811612	12A2p6	cell line	sgMsh2	151811612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	36	0	0	NA	exonic	Edem3	nonsynonymous SNV	"Edem3:NM_001039644:exon19:c.T2300C:p.F767S,Edem3:NM_001311165:exon19:c.T2243C:p.F748S,Edem3:NM_001311166:exon19:c.T2246C:p.F749S"	1qG2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9811351	TTC	nonsynonymous	CTGTTC	12	CTGTTCCTGTTC	NA
SSC	chr1	152844296	12A2p6	cell line	sgMsh2	152844296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	121	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon17:c.A2473G:p.I825V,Smg7:NM_001160256:exon17:c.A2335G:p.I779V,Smg7:NM_001160257:exon18:c.A2359G:p.I787V,Smg7:NM_001359257:exon18:c.A1330G:p.I444V"	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	153760822	12A2p6	cell line	sgMsh2	153760822	A	-	Deletion	Strelka2;Vardict	2	0.2	85	0	0	NA	exonic	Rnasel	frameshift deletion	Rnasel:NM_011882:exon8:c.1947delA:p.N652Tfs*6	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.856592802	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
SSC	chr1	153850771	12A2p6	cell line	sgMsh2	153850771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	169	0	0	NA	exonic	Teddm2	nonsynonymous SNV	Teddm2:NM_178243:exon1:c.A356G:p.N119S	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9999499	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	153874743	12A2p6	cell line	sgMsh2	153874743	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	196	0	0	NA	exonic	Teddm1b	synonymous SNV	Teddm1b:NM_001008426:exon1:c.G297A:p.Q99Q	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.137054848	3	1.00E-09	AGC	synonymous	NA	NA	NA	NA
SSC	chr1	153892064	12A2p6	cell line	sgMsh2	153892064	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	162	0	0	NA	exonic	Teddm1a	nonsynonymous SNV	Teddm1a:NM_178244:exon1:c.T273A:p.F91L	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999969	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	156635122	12A2p6	cell line	sgMsh2	156635122	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	177	0	0	NA	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.T1466A:p.I489N,Abl2:NM_009595:exon9:c.T1466A:p.I489N"	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999989	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	162677426	12A2p6	cell line	sgMsh2	162677426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	100	0	0	NA	exonic	Prrc2c	synonymous SNV	Prrc2c:NM_001081290:exon32:c.T7851C:p.S2617S	1qH2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	CAC	synonymous	NA	NA	NA	NA
SSC	chr1	162954403	12A2p6	cell line	sgMsh2	162954403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	103	0	0	NA	exonic	Fmo3	synonymous SNV	Fmo3:NM_008030:exon9:c.A1380G:p.E460E	1qH2.1	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.685274242	2	0.09133505	CTT	synonymous	NA	NA	NA	NA
SSC	chr1	164161866	12A2p6	cell line	sgMsh2	164161866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	240	0	0	NA	exonic	F5	synonymous SNV	F5:NM_007976:exon3:c.T336C:p.H112H	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	1.46E-08	ATC	synonymous	CATC	9	CATCCATCC	NA
SSC	chr1	164194057	12A2p6	cell line	sgMsh2	164194057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	179	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon13:c.A4100G:p.Q1367R	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999991	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	164257135	12A2p6	cell line	sgMsh2	164257135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	247	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	"Slc19a2:NM_001276455:exon2:c.T593C:p.V198A,Slc19a2:NM_054087:exon2:c.T593C:p.V198A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	9.40E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	164257255	12A2p6	cell line	sgMsh2	164257255	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	157	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	Slc19a2:NM_054087:exon2:c.T713G:p.V238G	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.67242535	2	0.9929094	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	137	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999826	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	166238632	12A2p6	cell line	sgMsh2	166238632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Mael	nonsynonymous SNV	Mael:NM_175296:exon1:c.A35G:p.Y12C	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9752483	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	169655604	12A2p6	cell line	sgMsh2	169655604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	64	0	0	NA	exonic	Rgs5	synonymous SNV	"Rgs5:NM_001313705:exon1:c.G27A:p.P9P,Rgs5:NM_009063:exon1:c.G27A:p.P9P"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.987576	CGC	synonymous	NA	NA	NA	NA
SSC	chr1	169676889	12A2p6	cell line	sgMsh2	169676889	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	82	0	0	NA	exonic	Rgs5	nonsynonymous SNV	"Rgs5:NM_001313705:exon2:c.T107C:p.L36P,Rgs5:NM_009063:exon2:c.T107C:p.L36P"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.488257897	2	0.9986218	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	169744490	12A2p6	cell line	sgMsh2	169744490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	129	0	0	NA	exonic	Rgs4	nonsynonymous SNV	Rgs4:NM_009062:exon4:c.T239C:p.L80P	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999697	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	127	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	171286521	12A2p6	cell line	sgMsh2	171286521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	50	0	0	NA	exonic	Usp21	synonymous SNV	Usp21:NM_013919:exon2:c.A429G:p.A143A	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9927756	GTG	synonymous	NA	NA	NA	NA
SSC	chr1	171384812	12A2p6	cell line	sgMsh2	171384812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	55	0	0	NA	exonic	Nectin4	nonsynonymous SNV	"Nectin4:NM_001122680:exon5:c.A977G:p.Q326R,Nectin4:NM_027893:exon5:c.A977G:p.Q326R"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.994883	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	171460557	12A2p6	cell line	sgMsh2	171460557	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	161	0	0	NA	exonic	F11r	synonymous SNV	F11r:NM_172647:exon3:c.C150A:p.T50T	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999967	CCT	synonymous	NA	NA	NA	NA
SSC	chr1	172246733	12A2p6	cell line	sgMsh2	172246733	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	exonic	Atp1a4	frameshift deletion	Atp1a4:NM_013734:exon8:c.952delT:p.W318Gfs*36	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr1	172319308	12A2p6	cell line	sgMsh2	172319308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	125	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon6:c.T1736C:p.F579S	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.706689062	2	0.09988487	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	172538507	12A2p6	cell line	sgMsh2	172538507	T	C	SNV	Mutect2;Vardict	2	0.053	104	0	0	NA	exonic	Cfap45	nonsynonymous SNV	Cfap45:NM_027972:exon8:c.T926C:p.L309P	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.226997093	3	0.999975	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	173203796	12A2p6	cell line	sgMsh2	173203796	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.211	204	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.T439C:p.S147P	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9998774	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	173203798	12A2p6	cell line	sgMsh2	173203798	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.211	204	0	0	NA	exonic	Olfr218	synonymous SNV	Olfr218:NM_001001809:exon1:c.T441C:p.S147S	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9998774	CTG	synonymous	NA	NA	NA	NA
SSC	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Strelka2;Vardict	2	0.1672	287	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.716111582	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr1	173642702	12A2p6	cell line	sgMsh2	173642702	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	280	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon5:c.C855T:p.V285V	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	1.85E-09	TCC	synonymous	NA	NA	NA	NA
SSC	chr1	173937892	12A2p6	cell line	sgMsh2	173937892	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	145	0	0	NA	exonic	Ifi203	frameshift deletion	"Ifi203:NM_001302649:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302650:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302651:exon3:c.115delA:p.M39Cfs*23"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.818046126	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr1	174041991	12A2p6	cell line	sgMsh2	174041991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	156	0	0	NA	exonic	Olfr433	nonsynonymous SNV	Olfr433:NM_146717:exon1:c.C40T:p.L14F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	174137279	12A2p6	cell line	sgMsh2	174137279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	217	0	0	NA	exonic	Olfr424	synonymous SNV	Olfr424:NM_146721:exon1:c.C534T:p.F178F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TCT	synonymous	NA	NA	NA	NA
SSC	chr1	174158781	12A2p6	cell line	sgMsh2	174158781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	132	0	0	NA	exonic	Olfr420	nonsynonymous SNV	Olfr420:NM_146305:exon1:c.T7C:p.F3L	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9982398	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	174250193	12A2p6	cell line	sgMsh2	174250193	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	77	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.C733T:p.L245F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.998884	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	174448814	12A2p6	cell line	sgMsh2	174448814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	173	0	0	NA	exonic	Olfr220	nonsynonymous SNV	Olfr220:NM_207694:exon1:c.A190G:p.M64V	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.5951267	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	174699594	12A2p6	cell line	sgMsh2	174699594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	123	0	0	NA	exonic	Fmn2	synonymous SNV	Fmn2:NM_019445:exon13:c.A4251G:p.E1417E	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9995005	AAC	synonymous	NA	NA	NA	NA
SSC	chr1	175153188	12A2p6	cell line	sgMsh2	175153188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon5:c.A269G:p.Y90C,Rgs7:NM_001347195:exon5:c.A269G:p.Y90C,Rgs7:NM_011880:exon5:c.A269G:p.Y90C"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.999977	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	175270894	12A2p6	cell line	sgMsh2	175270894	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	99	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon3:c.G98A:p.R33H,Rgs7:NM_001347195:exon3:c.G98A:p.R33H,Rgs7:NM_001357129:exon3:c.G98A:p.R33H,Rgs7:NM_011880:exon3:c.G98A:p.R33H"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	1	0.9997574	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	175688141	12A2p6	cell line	sgMsh2	175688141	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	121	0	0	NA	exonic	Chml	synonymous SNV	Chml:NM_021350:exon1:c.C213T:p.G71G	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9968557	CGC	synonymous	NA	NA	NA	NA
SSC	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	65	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.882290586	1	0.9674443	ATA	synonymous	NA	NA	NA	NA
SSC	chr1	177050128	12A2p6	cell line	sgMsh2	177050128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	127	0	0	NA	exonic	Akt3	nonsynonymous SNV	Akt3:NM_011785:exon10:c.T1073C:p.I358T	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	177772194	12A2p6	cell line	sgMsh2	177772194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	68	0	0	NA	exonic	Adss	nonsynonymous SNV	Adss:NM_007422:exon9:c.A823G:p.T275A	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	GTA	nonsynonymous	ACAGT	10	ACAGTACAGT	NA
SSC	chr1	178915747	12A2p6	cell line	sgMsh2	178915747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	169	0	0	NA	exonic	Kif26b	frameshift deletion	Kif26b:NM_001161665:exon12:c.3407delT:p.L1137fs*0	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	104	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	77	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC	chr1	181101591	12A2p6	cell line	sgMsh2	181101591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	65	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon19:c.A2224C:p.T742P	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	181181474	12A2p6	cell line	sgMsh2	181181474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	61	0	0	NA	exonic	Wdr26	nonsynonymous SNV	Wdr26:NM_145514:exon13:c.T1730C:p.I577T	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	182341335	12A2p6	cell line	sgMsh2	182341335	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	43	0	0	NA	exonic	Fbxo28	nonsynonymous SNV	Fbxo28:NM_175127:exon1:c.C255A:p.S85R	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.749518702	1	7.01E-07	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	185258555	12A2p6	cell line	sgMsh2	185258555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	123	0	0	NA	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon19:c.T1925C:p.L642P	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999541	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
SSC	chr1	185323752	12A2p6	cell line	sgMsh2	185323752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	78	0	0	NA	exonic	Iars2	nonsynonymous SNV	Iars2:NM_198653:exon4:c.T614C:p.M205T	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8224603	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	185356503	12A2p6	cell line	sgMsh2	185356503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	143	0	0	NA	exonic	Bpnt1	nonsynonymous SNV	"Bpnt1:NM_001347212:exon8:c.T639A:p.N213K,Bpnt1:NM_011794:exon9:c.T804A:p.N268K,Bpnt1:NM_001347210:exon10:c.T849A:p.N283K"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.633878673	2	0.9980244	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	185428030	12A2p6	cell line	sgMsh2	185428030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	107	0	0	NA	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon32:c.G4422A:p.M1474I,Eprs:NM_001357474:exon33:c.G4443A:p.M1481I"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	TGG	nonsynonymous	TCCA	9	TCCATCCAT	NA
SSC	chr1	185464395	12A2p6	cell line	sgMsh2	185464395	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	109	0	0	NA	exonic	Slc30a10	nonsynonymous SNV	Slc30a10:NM_001033286:exon4:c.A1253C:p.N418T	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	187192998	12A2p6	cell line	sgMsh2	187192998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	173	0	0	NA	exonic	Spata17	nonsynonymous SNV	"Spata17:NM_028848:exon3:c.A229G:p.I77V,Spata17:NM_029067:exon3:c.A229G:p.I77V"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999986	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	188443396	12A2p6	cell line	sgMsh2	188443396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	115	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon16:c.T3690C:p.P1230P	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	CTA	synonymous	NA	NA	NA	NA
SSC	chr1	188537827	12A2p6	cell line	sgMsh2	188537827	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	181	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon25:c.C5270T:p.A1757V	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9961219	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	188784788	12A2p6	cell line	sgMsh2	188784788	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	113	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon48:c.T9694A:p.Y3232N	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chr1	189339813	12A2p6	cell line	sgMsh2	189339813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	108	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon2:c.A329G:p.N110S,Kcnk2:NM_001281847:exon2:c.A293G:p.N98S,Kcnk2:NM_010607:exon2:c.A284G:p.N95S"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.509672717	2	0.9998471	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	189658609	12A2p6	cell line	sgMsh2	189658609	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	219	0	0	NA	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon12:c.T3025A:p.C1009S	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.141337812	3	1	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	189850865	12A2p6	cell line	sgMsh2	189850865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	38	0	0	NA	exonic	Ptpn14	synonymous SNV	Ptpn14:NM_008976:exon13:c.C1908T:p.G636G	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9835398	GCG	synonymous	GGC	11	GGCGGCGGCGG	NA
SSC	chr1	190123278	12A2p6	cell line	sgMsh2	190123278	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	115	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon5:c.G2156T:p.S719I,Prox1:NM_008937:exon5:c.G2156T:p.S719I"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9877063	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	190161612	12A2p6	cell line	sgMsh2	190161612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	121	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon2:c.A635G:p.K212R,Prox1:NM_008937:exon2:c.A635G:p.K212R"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9998849	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2404	104	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
SSC	chr1	192128022	12A2p6	cell line	sgMsh2	192128022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	147	0	0	NA	exonic	Rcor3	nonsynonymous SNV	"Rcor3:NM_001290278:exon4:c.A302G:p.E101G,Rcor3:NM_001290279:exon4:c.A302G:p.E101G,Rcor3:NM_001290280:exon4:c.A302G:p.E101G,Rcor3:NM_001346740:exon4:c.A302G:p.E101G,Rcor3:NM_144814:exon4:c.A302G:p.E101G"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	0.848026874	1	0.9843908	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	88	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr1	192847134	12A2p6	cell line	sgMsh2	192847134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	115	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.T373C:p.Y125H,Sertad4:NM_198247:exon4:c.T373C:p.Y125H"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr1	194644882	12A2p6	cell line	sgMsh2	194644882	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.27	62	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon2:c.T1123C:p.Y375H	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.11164545	NA	1	1	1	0.9968458	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	3540451	12A2p6	cell line	sgMsh2	3540451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	60	0	0	NA	exonic	Iyd	synonymous SNV	Iyd:NM_027391:exon1:c.A156G:p.Q52Q	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9963779	AAG	synonymous	NA	NA	NA	NA
SSC	chr10	5030431	12A2p6	cell line	sgMsh2	5030431	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	182	0	0	NA	exonic	Syne1	stopgain	"Syne1:NM_022027:exon16:c.C2554T:p.R852X,Syne1:NM_001079686:exon54:c.C8737T:p.R2913X,Syne1:NM_001347711:exon145:c.C26140T:p.R8714X,Syne1:NM_001347732:exon145:c.C26104T:p.R8702X"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.12848892	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	5228100	12A2p6	cell line	sgMsh2	5228100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	60	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.A14394C:p.K4798N,Syne1:NM_001347732:exon77:c.A14373C:p.K4791N"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9963779	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	5259244	12A2p6	cell line	sgMsh2	5259244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	52	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon63:c.G10279A:p.A3427T,Syne1:NM_001347732:exon63:c.G10258A:p.A3420T"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.993706	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	5805268	12A2p6	cell line	sgMsh2	5805268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	23	0	0	NA	exonic	Fbxo5	nonsynonymous SNV	Fbxo5:NM_025995:exon1:c.A70G:p.T24A	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9547465	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	6890487	12A2p6	cell line	sgMsh2	6890487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	0	0	NA	exonic	Ipcef1	synonymous SNV	"Ipcef1:NM_001170800:exon9:c.A1209G:p.E403E,Ipcef1:NM_001347225:exon9:c.A1221G:p.E407E"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9883096	TTT	synonymous	NA	NA	NA	NA
SSC	chr10	11290372	12A2p6	cell line	sgMsh2	11290372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	147	0	0	NA	exonic	Fbxo30	synonymous SNV	"Fbxo30:NM_001168297:exon2:c.T837C:p.S279S,Fbxo30:NM_027968:exon2:c.T837C:p.S279S"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999913	GTT	synonymous	NA	NA	NA	NA
SSC	chr10	11290755	12A2p6	cell line	sgMsh2	11290755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	168	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.T1220C:p.V407A,Fbxo30:NM_027968:exon2:c.T1220C:p.V407A"	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.999998	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	12413993	12A2p6	cell line	sgMsh2	12413993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	55	0	0	NA	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon68:c.A9602G:p.Q3201R	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	12686428	12A2p6	cell line	sgMsh2	12686428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	34	0	0	NA	exonic	Utrn	synonymous SNV	Utrn:NM_011682:exon28:c.A3876G:p.E1292E	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	2	1	1	0.9783868	GTT	synonymous	NA	NA	NA	NA
SSC	chr10	12745284	12A2p6	cell line	sgMsh2	12745284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	116	0	0	NA	exonic	Utrn	synonymous SNV	Utrn:NM_011682:exon7:c.T642C:p.A214A	10qA1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.338354157	3	0.9199202	AAG	synonymous	NA	NA	NA	NA
SSC	chr10	17915302	12A2p6	cell line	sgMsh2	17915302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	122	0	0	NA	exonic	Heca	synonymous SNV	Heca:NM_001033432:exon2:c.A1005G:p.A335A	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999508	CTG	synonymous	NA	NA	NA	NA
SSC	chr10	18523873	12A2p6	cell line	sgMsh2	18523873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	97	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.T756C:p.D252D,Nhsl1:NM_001163592:exon6:c.T744C:p.D248D"	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997213	ATA	synonymous	NA	NA	NA	NA
SSC	chr10	19849139	12A2p6	cell line	sgMsh2	19849139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	78	0	0	NA	exonic	Slc35d3	stopgain	Slc35d3:NM_029529:exon2:c.C970T:p.Q324X	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9989588	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	19849510	12A2p6	cell line	sgMsh2	19849510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	49	0	0	NA	exonic	Slc35d3	nonsynonymous SNV	Slc35d3:NM_029529:exon2:c.T599C:p.L200P	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9922605	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	74	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9986261	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	21139393	12A2p6	cell line	sgMsh2	21139393	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	40	0	0	NA	exonic	Myb	nonsynonymous SNV	"Myb:NM_010848:exon14:c.T1694G:p.L565R,Myb:NM_001198914:exon15:c.T2051G:p.L684R"	10qA3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9856425	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	24	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9576523	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	24660255	12A2p6	cell line	sgMsh2	24660255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	128	0	0	NA	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon13:c.T1246C:p.Y416H,Enpp1:NM_001308329:exon13:c.T190C:p.Y64H,Enpp1:NM_008813:exon13:c.T1246C:p.Y416H"	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999676	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.386	79	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	49	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9922605	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	26336234	12A2p6	cell line	sgMsh2	26336234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	77	0	0	NA	exonic	L3mbtl3	nonsynonymous SNV	"L3mbtl3:NM_001347467:exon8:c.A788T:p.E263V,L3mbtl3:NM_001359254:exon9:c.A863T:p.E288V,L3mbtl3:NM_001359255:exon9:c.A635T:p.E212V,L3mbtl3:NM_172787:exon9:c.A863T:p.E288V"	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.998884	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	28782135	12A2p6	cell line	sgMsh2	28782135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	85	0	0	NA	exonic	Themis	nonsynonymous SNV	"Themis:NM_001374699:exon4:c.T1157C:p.V386A,Themis:NM_178666:exon4:c.T1157C:p.V386A,Themis:NM_001305663:exon5:c.T890C:p.V297A"	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9993592	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	28782219	12A2p6	cell line	sgMsh2	28782219	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.069	85	0	0	NA	exonic	Themis	frameshift deletion	"Themis:NM_001374699:exon4:c.1241delA:p.V416Sfs*19,Themis:NM_178666:exon4:c.1241delA:p.V416Sfs*18,Themis:NM_001305663:exon5:c.974delA:p.V327Sfs*19"	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.295524517	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr10	29150332	12A2p6	cell line	sgMsh2	29150332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	79	0	0	NA	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon4:c.T1409C:p.L470P	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	31320314	12A2p6	cell line	sgMsh2	31320314	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	119	0	0	NA	exonic	Hddc2	nonsynonymous SNV	Hddc2:NM_027168:exon4:c.A341C:p.K114T	10qA4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999394	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
SSC	chr10	34044091	12A2p6	cell line	sgMsh2	34044091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	99	0	0	NA	exonic	Calhm4	nonsynonymous SNV	Calhm4:NM_001081165:exon1:c.C179T:p.A60V	10qB1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997574	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	34313632	12A2p6	cell line	sgMsh2	34313632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	66	0	0	NA	exonic	Nt5dc1	nonsynonymous SNV	"Nt5dc1:NM_001347463:exon9:c.A386G:p.K129R,Nt5dc1:NM_176968:exon10:c.A1061G:p.K354R"	10qB1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9976086	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	38	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9835398	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	42197496	12A2p6	cell line	sgMsh2	42197496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	30	0	0	NA	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon3:c.C1024T:p.L342L,Foxo3:NM_019740:exon3:c.C1024T:p.L342L"	10qB2	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9716671	AGG	synonymous	NA	NA	NA	NA
SSC	chr10	45125980	12A2p6	cell line	sgMsh2	45125980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	134	0	0	NA	exonic	Prep	synonymous SNV	Prep:NM_011156:exon10:c.C1230T:p.C410C	10qB2	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999786	GCG	synonymous	NA	NA	NA	NA
SSC	chr10	45153135	12A2p6	cell line	sgMsh2	45153135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	61	0	0	NA	exonic	Prep	nonsynonymous SNV	Prep:NM_011156:exon13:c.T1630C:p.S544P	10qB2	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	149	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999925	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	52027972	12A2p6	cell line	sgMsh2	52027972	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.75	7	0	0	NA	exonic	Vgll2	synonymous SNV	"Vgll2:NM_001300957:exon3:c.C927T:p.L309L,Vgll2:NM_153786:exon3:c.C930T:p.L310L"	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	2	1	1	0.8730352	TCC	synonymous	NA	NA	NA	NA
SSC	chr10	52155111	12A2p6	cell line	sgMsh2	52155111	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	47	0	0	NA	exonic	Ros1	nonsynonymous SNV	Ros1:NM_011282:exon13:c.T1460C:p.F487S	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9911183	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	53343900	12A2p6	cell line	sgMsh2	53343900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	86	0	0	NA	exonic	Pln	nonsynonymous SNV	"Pln:NM_023129:exon2:c.A37G:p.R13G,Pln:NM_001141927:exon3:c.A37G:p.R13G"	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9994021	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	53349103	12A2p6	cell line	sgMsh2	53349103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	65	0	0	NA	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon3:c.T389C:p.M130T	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9974372	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	56049781	12A2p6	cell line	sgMsh2	56049781	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.367	179	0	0	NA	exonic	Tbc1d32	frameshift deletion	Tbc1d32:NM_001033385:exon29:c.3267delA:p.P1090Rfs*24	10qB3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
SSC	chr10	58457650	12A2p6	cell line	sgMsh2	58457650	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	110	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon7:c.G841T:p.A281S	10qB4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998869	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	59448817	12A2p6	cell line	sgMsh2	59448817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	85	0	0	NA	exonic	Mcu	synonymous SNV	Mcu:NM_001033259:exon8:c.A1017G:p.V339V	10qB4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9993592	GTA	synonymous	NA	NA	NA	NA
SSC	chr10	62966742	12A2p6	cell line	sgMsh2	62966742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	65	0	0	NA	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon17:c.A2638G:p.S880G	10qB4	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9974372	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	68097065	12A2p6	cell line	sgMsh2	68097065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	98	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.C3006A:p.S1002R	10qB5.2	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.967949866	1	0.9992528	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	70283983	12A2p6	cell line	sgMsh2	70283983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	114	0	0	NA	exonic	Slc16a9	synonymous SNV	Slc16a9:NM_025807:exon6:c.T1455C:p.D485D	10qB5.3	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999143	ATA	synonymous	NA	NA	NA	NA
SSC	chr10	75125037	12A2p6	cell line	sgMsh2	75125037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	106	0	0	NA	exonic	Bcr	synonymous SNV	Bcr:NM_001081412:exon2:c.A1299T:p.G433G	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998507	GAA	synonymous	NA	NA	NA	NA
SSC	chr10	75642257	12A2p6	cell line	sgMsh2	75642257	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	69	0	0	NA	exonic	Susd2	frameshift deletion	Susd2:NM_027890:exon3:c.298delA:p.T100Pfs*42	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr10	75784155	12A2p6	cell line	sgMsh2	75784155	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	55	0	0	NA	exonic	Gstt1	nonsynonymous SNV	"Gstt1:NM_001358778:exon5:c.G457A:p.G153R,Gstt1:NM_008185:exon5:c.G607A:p.G203R"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	76605074	12A2p6	cell line	sgMsh2	76605074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	41	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon22:c.A1765G:p.I589V,Col6a2:NM_146007:exon22:c.A1765G:p.I589V"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9865922	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	76613271	12A2p6	cell line	sgMsh2	76613271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	117	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon5:c.G830A:p.G277D,Col6a2:NM_146007:exon5:c.G830A:p.G277D"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999304	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	52	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.993706	CTG	synonymous	NA	NA	NA	NA
SSC	chr10	78202959	12A2p6	cell line	sgMsh2	78202959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	62	0	0	NA	exonic	Trappc10	synonymous SNV	Trappc10:NM_001081055:exon15:c.T2298C:p.F766F	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9968458	CAA	synonymous	NA	NA	NA	NA
SSC	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	97	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997213	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	79739630	12A2p6	cell line	sgMsh2	79739630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	40	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon10:c.T2066C:p.L689P	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9856425	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	79743534	12A2p6	cell line	sgMsh2	79743534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	83	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon3:c.A382G:p.T128A	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9992638	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	80011990	12A2p6	cell line	sgMsh2	80011990	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	35	0	0	NA	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon39:c.5421delG:p.A1809Lfs*6,Abca7:NM_013850:exon39:c.5397delG:p.A1801Lfs*6"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr10	80020721	12A2p6	cell line	sgMsh2	80020721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	79	0	0	NA	exonic	Arhgap45	synonymous SNV	"Arhgap45:NM_027521:exon2:c.T102C:p.H34H,Arhgap45:NM_001142701:exon3:c.T450C:p.H150H,Arhgap45:NM_001347074:exon3:c.T483C:p.H161H"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.86515873	1	0.9662441	ATG	synonymous	NA	NA	NA	NA
SSC	chr10	80274827	12A2p6	cell line	sgMsh2	80274827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	32	0	0	NA	exonic	Dazap1	synonymous SNV	"Dazap1:NM_001122604:exon4:c.T261G:p.P87P,Dazap1:NM_001122605:exon4:c.T261G:p.P87P,Dazap1:NM_001378995:exon4:c.T261G:p.P87P,Dazap1:NM_133188:exon4:c.T261G:p.P87P"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9752483	CTC	synonymous	G	5	GGGGG	NA
SSC	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	39	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	2	1	1	0.9846265	CGC	synonymous	GCTG	8	GCTGGCTG	NA
SSC	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	45	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	0.732386846	1	8.72E-07	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	15	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.923697	GTA	synonymous	NA	NA	NA	NA
SSC	chr10	80326183	12A2p6	cell line	sgMsh2	80326183	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	44	0	0	NA	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon3:c.T355A:p.W119R	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9890849	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;MuSe	2	0.3	8	0	0	NA	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.8809396	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	121	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-80778611	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999473	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	80905207	12A2p6	cell line	sgMsh2	80905207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	44	0	0	NA	exonic	Lmnb2	nonsynonymous SNV	"Lmnb2:NM_001347140:exon2:c.G297T:p.E99D,Lmnb2:NM_010722:exon5:c.G720T:p.E240D"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9890849	CCT	nonsynonymous	TCCACC	12	TCCACCTCCACC	NA
SSC	chr10	81212521	12A2p6	cell line	sgMsh2	81212521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	101	0	0	NA	exonic	Atcay	nonsynonymous SNV	Atcay:NM_178662:exon7:c.A730G:p.M244V	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997888	ATC	nonsynonymous	TCC	9	TCCTCCTCC	NA
SSC	chr10	81271396	12A2p6	cell line	sgMsh2	81271396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	69	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon6:c.T872C:p.I291T	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	83506667	12A2p6	cell line	sgMsh2	83506667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	66	0	0	NA	exonic	Aldh1l2	synonymous SNV	Aldh1l2:NM_153543:exon13:c.T1617C:p.A539A	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GAG	synonymous	NA	NA	NA	NA
SSC	chr10	83591052	12A2p6	cell line	sgMsh2	83591052	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	94	0	0	NA	exonic	Washc4	nonsynonymous SNV	Washc4:NM_001033375:exon31:c.T3223A:p.S1075T	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	83608723	12A2p6	cell line	sgMsh2	83608723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	126	0	0	NA	exonic	Appl2	nonsynonymous SNV	Appl2:NM_145220:exon16:c.A1430G:p.D477G	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.449711221	2	0.999491	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	84528116	12A2p6	cell line	sgMsh2	84528116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	66	0	0	NA	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A1082G:p.K361R	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	84656068	12A2p6	cell line	sgMsh2	84656068	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	116	0	0	NA	exonic	Polr3b	nonsynonymous SNV	Polr3b:NM_027423:exon12:c.T1090A:p.L364M	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	86701955	12A2p6	cell line	sgMsh2	86701955	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	107	0	0	NA	exonic	Hsp90b1	frameshift deletion	Hsp90b1:NM_011631:exon5:c.485delA:p.N162Ifs*4	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.92940319	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr10	86719641	12A2p6	cell line	sgMsh2	86719641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	159	0	0	NA	exonic	Ttc41	synonymous SNV	"Ttc41:NM_153595:exon2:c.T960C:p.G320G,Ttc41:NM_001003910:exon3:c.T960C:p.G320G,Ttc41:NM_001003939:exon4:c.T960C:p.G320G"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9999868	GTT	synonymous	NA	NA	NA	NA
SSC	chr10	86850611	12A2p6	cell line	sgMsh2	86850611	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	124	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon63:c.T6954A:p.N2318K	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	87225881	12A2p6	cell line	sgMsh2	87225881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	136	0	0	NA	exonic	1700113H08Rik	synonymous SNV	1700113H08Rik:NM_029685:exon5:c.T192C:p.S64S	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	0.9999795	CTA	synonymous	NA	NA	NA	NA
SSC	chr10	87913683	12A2p6	cell line	sgMsh2	87913683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	152	0	0	NA	exonic	Igf1	synonymous SNV	"Igf1:NM_001111274:exon3:c.T237C:p.C79C,Igf1:NM_001111275:exon3:c.T285C:p.C95C,Igf1:NM_001111276:exon3:c.T237C:p.C79C,Igf1:NM_010512:exon3:c.T285C:p.C95C,Igf1:NM_001314010:exon4:c.T285C:p.C95C"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999939	GTT	synonymous	NA	NA	NA	NA
SSC	chr10	88160925	12A2p6	cell line	sgMsh2	88160925	A	C	SNV	Mutect2;MuSe;Vardict	3	0.304	132	0	0	NA	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon5:c.A404C:p.K135T,Nup37:NM_028334:exon5:c.A404C:p.K135T"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999754	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	88434059	12A2p6	cell line	sgMsh2	88434059	A	-	Deletion	Strelka2;Vardict	2	0.1552	58	0	0	NA	exonic	Gnptab	frameshift deletion	"Gnptab:NM_001364707:exon12:c.2485delA:p.K831Sfs*12,Gnptab:NM_001004164:exon13:c.2623delA:p.K877Sfs*12"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.664716014	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
SSC	chr10	88536393	12A2p6	cell line	sgMsh2	88536393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	70	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon20:c.C2332T:p.R778C,Mybpc1:NM_175418:exon21:c.C2374T:p.R792C"	10qC1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	97517618	12A2p6	cell line	sgMsh2	97517618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	151	0	0	NA	exonic	Dcn	nonsynonymous SNV	"Dcn:NM_001190451:exon8:c.A1028T:p.Y343F,Dcn:NM_007833:exon8:c.A1028T:p.Y343F"	10qC3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999934	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	100341341	12A2p6	cell line	sgMsh2	100341341	T	C	SNV	Mutect2;Vardict	2	0.286	12	0	0	NA	exonic	Gm4303;Gm4305;Gm4307	synonymous SNV	"Gm4303:NM_001166638:exon1:c.T486C:p.T162T,Gm4305:NM_001166639:exon1:c.T486C:p.T162T,Gm4307:NM_001166641:exon1:c.T486C:p.T162T"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.09230121	CTT	synonymous	NA	NA	NA	NA
SSC	chr10	102482413	12A2p6	cell line	sgMsh2	102482413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	93	0	0	NA	exonic	Nts	nonsynonymous SNV	Nts:NM_024435:exon4:c.T428C:p.I143T	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9956453	GAT	nonsynonymous	T	5	TTTTT	NA
SSC	chr10	103214549	12A2p6	cell line	sgMsh2	103214549	T	-	Deletion	Mutect2;Vardict	2	0.084	121	0	0	NA	exonic	Lrriq1	frameshift deletion	"Lrriq1:NM_001163559:exon8:c.2341delA:p.R781Gfs*3,Lrriq1:NM_001361058:exon8:c.2341delA:p.R781Gfs*3,Lrriq1:NM_029134:exon8:c.2341delA:p.R781Gfs*3"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.359768977	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr10	105823174	12A2p6	cell line	sgMsh2	105823174	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	109	0	0	NA	exonic	Mettl25	frameshift deletion	"Mettl25:NM_207522:exon5:c.1247delA:p.N416Tfs*19,Mettl25:NM_001359640:exon6:c.812delA:p.N271Tfs*19,Mettl25:NM_001359642:exon6:c.812delA:p.N271Tfs*19"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.80091427	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr10	106893471	12A2p6	cell line	sgMsh2	106893471	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	64	0	0	NA	exonic	Ppfia2	frameshift deletion	"Ppfia2:NM_001359679:exon20:c.2472delT:p.F825Lfs*30,Ppfia2:NM_001359683:exon20:c.2460delT:p.F821Lfs*30,Ppfia2:NM_001359684:exon20:c.2457delT:p.F820Lfs*30,Ppfia2:NM_001359685:exon20:c.2472delT:p.F825Lfs*30,Ppfia2:NM_001359690:exon20:c.2457delT:p.F820Lfs*30,Ppfia2:NM_001359691:exon20:c.2460delT:p.F821Lfs*30,Ppfia2:NM_001359692:exon20:c.2472delT:p.F825Lfs*29,Ppfia2:NM_001359694:exon20:c.2460delT:p.F821Lfs*29,Ppfia2:NM_001359695:exon20:c.2457delT:p.F820Lfs*29,Ppfia2:NM_001359697:exon20:c.2460delT:p.F821Lfs*29,Ppfia2:NM_001359698:exon20:c.2457delT:p.F820Lfs*29,Ppfia2:NM_001359677:exon21:c.2481delT:p.F828Lfs*30,Ppfia2:NM_001359678:exon21:c.2478delT:p.F827Lfs*30,Ppfia2:NM_001359680:exon21:c.2469delT:p.F824Lfs*30,Ppfia2:NM_001359681:exon21:c.2466delT:p.F823Lfs*30,Ppfia2:NM_001359682:exon21:c.2481delT:p.F828Lfs*30,Ppfia2:NM_001359686:exon21:c.2469delT:p.F824Lfs*30,Ppfia2:NM_001359687:exon21:c.2481delT:p.F828Lfs*29,Ppfia2:NM_001359688:exon21:c.2466delT:p.F823Lfs*30,Ppfia2:NM_001359689:exon21:c.2469delT:p.F824Lfs*29,Ppfia2:NM_001359693:exon21:c.2466delT:p.F823Lfs*29,Ppfia2:NM_001359696:exon21:c.2466delT:p.F823Lfs*29,Ppfia2:NM_001205341:exon22:c.2682delT:p.F895Lfs*30,Ppfia2:NM_001359672:exon22:c.2691delT:p.F898Lfs*30,Ppfia2:NM_001359673:exon22:c.2682delT:p.F895Lfs*30,Ppfia2:NM_001359674:exon22:c.2679delT:p.F894Lfs*29,Ppfia2:NM_001359675:exon22:c.2682delT:p.F895Lfs*29,Ppfia2:NM_001359676:exon22:c.2679delT:p.F894Lfs*29,Ppfia2:NM_177373:exon22:c.2679delT:p.F894Lfs*30"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.963666902	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr10	107382515	12A2p6	cell line	sgMsh2	107382515	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	53	0	0	NA	exonic	Lin7a	synonymous SNV	Lin7a:NM_001039354:exon4:c.A285G:p.A95A	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.569634213	2	0.9265796	CAG	synonymous	NA	NA	NA	NA
SSC	chr10	108690913	12A2p6	cell line	sgMsh2	108690913	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	79	0	0	NA	exonic	Syt1	nonsynonymous SNV	"Syt1:NM_001252342:exon4:c.A134T:p.K45M,Syt1:NM_001358501:exon4:c.A134T:p.K45M,Syt1:NM_001358503:exon4:c.A134T:p.K45M,Syt1:NM_009306:exon4:c.A134T:p.K45M,Syt1:NM_001252341:exon5:c.A134T:p.K45M,Syt1:NM_001358504:exon5:c.A134T:p.K45M,Syt1:NM_001358506:exon5:c.A134T:p.K45M,Syt1:NM_001358502:exon6:c.A134T:p.K45M"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	109707907	12A2p6	cell line	sgMsh2	109707907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	79	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001368815:exon29:c.A5665G:p.S1889G,Nav3:NM_001081035:exon30:c.A5686G:p.S1896G"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	109764975	12A2p6	cell line	sgMsh2	109764975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	45	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon16:c.G3790A:p.A1264T,Nav3:NM_001368815:exon16:c.G3790A:p.A1264T"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9898092	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	111492892	12A2p6	cell line	sgMsh2	111492892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	112	0	0	NA	exonic	Nap1l1	synonymous SNV	"Nap1l1:NM_001358932:exon7:c.A492G:p.E164E,Nap1l1:NM_015781:exon9:c.A681G:p.E227E"	10qD1	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9998531	AAG	synonymous	NA	NA	NA	NA
SSC	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	121	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	117671739	12A2p6	cell line	sgMsh2	117671739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	108	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon6:c.A760G:p.N254D	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	1	0.9998701	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	117690486	12A2p6	cell line	sgMsh2	117690486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	159	0	0	NA	exonic	Mdm2	synonymous SNV	"Mdm2:NM_001288586:exon11:c.T1047G:p.T349T,Mdm2:NM_010786:exon12:c.T1194G:p.T398T"	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999962	AAG	synonymous	NA	NA	NA	NA
SSC	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	63	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	1	0.9970567	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
SSC	chr10	121596189	12A2p6	cell line	sgMsh2	121596189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	93	0	0	NA	exonic	Xpot	nonsynonymous SNV	"Xpot:NM_001081056:exon23:c.A2800G:p.I934V,Xpot:NM_001359618:exon23:c.A2800G:p.I934V"	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	122081458	12A2p6	cell line	sgMsh2	122081458	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	33	0	0	NA	exonic	Rxylt1	frameshift deletion	"Rxylt1:NM_153059:exon6:c.1149delC:p.F384Sfs*13,Rxylt1:NM_001364706:exon7:c.585delC:p.F196Sfs*13"	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	AGG	frameshift	GATGAA	13	GATGAAGATGAAG	-1
SSC	chr10	122096942	12A2p6	cell line	sgMsh2	122096942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	10	0	0	NA	exonic	Rxylt1	nonsynonymous SNV	Rxylt1:NM_153059:exon1:c.A130G:p.R44G	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	2	1	1	0.8951264	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	123127812	12A2p6	cell line	sgMsh2	123127812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	116	0	0	NA	exonic	Usp15	synonymous SNV	"Usp15:NM_001301628:exon13:c.C1623T:p.C541C,Usp15:NM_027604:exon14:c.C1710T:p.C570C"	10qD2	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	GGC	synonymous	NA	NA	NA	NA
SSC	chr10	125996729	12A2p6	cell line	sgMsh2	125996729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	91	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon6:c.T774C:p.A258A	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	CTT	synonymous	T	5	TTTTT	NA
SSC	chr10	126008573	12A2p6	cell line	sgMsh2	126008573	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	99	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon14:c.C1905A:p.A635A	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997574	CCT	synonymous	NA	NA	NA	NA
SSC	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9917088	CCG	synonymous	NA	NA	NA	NA
SSC	chr10	127283710	12A2p6	cell line	sgMsh2	127283710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	47	0	0	NA	exonic	Mbd6	nonsynonymous SNV	"Mbd6:NM_001347171:exon10:c.A2636G:p.K879R,Mbd6:NM_001379570:exon10:c.A2639G:p.K880R,Mbd6:NM_001379571:exon10:c.A2639G:p.K880R,Mbd6:NM_033072:exon10:c.A2642G:p.K881R"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9871787	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	127333574	12A2p6	cell line	sgMsh2	127333574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	57	0	0	NA	exonic	Gli1	synonymous SNV	Gli1:NM_010296:exon11:c.T1311C:p.S437S	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9955432	CAC	synonymous	NA	NA	NA	NA
SSC	chr10	127462204	12A2p6	cell line	sgMsh2	127462204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	109	0	0	NA	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001359243:exon10:c.A827G:p.Q276R,R3hdm2:NM_001359246:exon10:c.A827G:p.Q276R,R3hdm2:NM_001168292:exon11:c.A827G:p.Q276R"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	127498509	12A2p6	cell line	sgMsh2	127498509	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	65	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359245:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359246:exon24:c.2881delG:p.D963Tfs*19,R3hdm2:NM_027900:exon24:c.2800delG:p.D936Tfs*19,R3hdm2:NM_001359243:exon25:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001168292:exon26:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001359244:exon26:c.2839delG:p.D949Tfs*19"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC	chr10	127692992	12A2p6	cell line	sgMsh2	127692992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	161	0	0	NA	exonic	Nemp1	synonymous SNV	"Nemp1:NM_001113211:exon5:c.T564C:p.T188T,Nemp1:NM_173732:exon5:c.T564C:p.T188T"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999967	CTG	synonymous	NA	NA	NA	NA
SSC	chr10	128291234	12A2p6	cell line	sgMsh2	128291234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	120	0	0	NA	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon24:c.G2630T:p.S877I	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999435	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	128634570	12A2p6	cell line	sgMsh2	128634570	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	67	0	0	NA	exonic	Ikzf4	synonymous SNV	"Ikzf4:NM_001358537:exon8:c.A1074C:p.R358R,Ikzf4:NM_011772:exon8:c.A1239C:p.R413R,Ikzf4:NM_001358536:exon9:c.A1074C:p.R358R"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	GTC	synonymous	NA	NA	NA	NA
SSC	chr10	128699547	12A2p6	cell line	sgMsh2	128699547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	86	0	0	NA	exonic	Cdk2	synonymous SNV	"Cdk2:NM_016756:exon6:c.T717C:p.S239S,Cdk2:NM_183417:exon7:c.T861C:p.S287S"	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	AAC	synonymous	NA	NA	NA	NA
SSC	chr10	129238632	12A2p6	cell line	sgMsh2	129238632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	348	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T482G:p.F161C	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	129437268	12A2p6	cell line	sgMsh2	129437268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	285	0	0	NA	exonic	Olfr786	nonsynonymous SNV	Olfr786:NM_146549:exon1:c.T455C:p.L152P	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	1.60E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	129501642	12A2p6	cell line	sgMsh2	129501642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	166	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.G757A:p.V253I	10qD3	chr10-80780538-129526639	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999977	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr10	129607790	12A2p6	cell line	sgMsh2	129607790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	125	0	0	NA	exonic	Olfr796	synonymous SNV	Olfr796:NM_146931:exon1:c.T690G:p.A230A	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
SSC	chr10	129607852	12A2p6	cell line	sgMsh2	129607852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	exonic	Olfr796	nonsynonymous SNV	Olfr796:NM_146931:exon1:c.A628G:p.I210V	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr10	129625486	12A2p6	cell line	sgMsh2	129625486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	311	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T574G:p.F192V	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr10	129670245	12A2p6	cell line	sgMsh2	129670245	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	252	0	0	NA	exonic	Olfr801	synonymous SNV	Olfr801:NM_146285:exon1:c.C273A:p.S91S	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
SSC	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	188	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.A763T:p.M255L	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATA	nonsynonymous	A	5	AAAAA	NA
SSC	chr10	129754909	12A2p6	cell line	sgMsh2	129754909	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	138	0	0	NA	exonic	Olfr807	frameshift deletion	Olfr807:NM_146929:exon1:c.540delC:p.I181Sfs*1	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	232	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr10	130112476	12A2p6	cell line	sgMsh2	130112476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	182	0	0	NA	exonic	Olfr823	nonsynonymous SNV	Olfr823:NM_146673:exon1:c.T313C:p.F105L	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAG	nonsynonymous	AAAGAA	12	AAAGAAAAAGAA	NA
SSC	chr10	130270579	12A2p6	cell line	sgMsh2	130270579	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	78	0	0	NA	exonic	Neurod4	synonymous SNV	"Neurod4:NM_001329489:exon2:c.C825A:p.S275S,Neurod4:NM_001329490:exon2:c.C825A:p.S275S,Neurod4:NM_007501:exon2:c.C825A:p.S275S"	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGG	synonymous	T	5	TTTTT	NA
SSC	chr10	130361899	12A2p6	cell line	sgMsh2	130361899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	127	0	0	NA	exonic	Tespa1	synonymous SNV	Tespa1:NM_183264:exon9:c.G789A:p.T263T	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CGG	synonymous	NA	NA	NA	NA
SSC	chr10	130446820	12A2p6	cell line	sgMsh2	130446820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	618	0	0	NA	exonic	Vmn2r86	synonymous SNV	Vmn2r86:NM_001103365:exon6:c.T1926C:p.H642H	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAT	synonymous	NA	NA	NA	NA
SSC	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	630	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr11	3262663	12A2p6	cell line	sgMsh2	3262663	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	116	0	0	NA	exonic	Drg1	synonymous SNV	Drg1:NM_007879:exon3:c.T168G:p.G56G	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	AAC	synonymous	NA	NA	NA	NA
SSC	chr11	3291041	12A2p6	cell line	sgMsh2	3291041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	159	0	0	NA	exonic	Patz1	nonsynonymous SNV	"Patz1:NM_001253690:exon1:c.T428A:p.L143Q,Patz1:NM_001253691:exon1:c.T428A:p.L143Q,Patz1:NM_019574:exon1:c.T428A:p.L143Q"	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999962	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	63	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	3976369	12A2p6	cell line	sgMsh2	3976369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	125	0	0	NA	exonic	Pes1	nonsynonymous SNV	Pes1:NM_022889:exon10:c.T991C:p.F331L	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.792348342	1	0.8024109	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	4146243	12A2p6	cell line	sgMsh2	4146243	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	19	0	0	NA	exonic	Ccdc157	frameshift deletion	"Ccdc157:NM_001164620:exon9:c.1672delC:p.Q558Rfs*36,Ccdc157:NM_177616:exon10:c.1366delC:p.Q456Rfs*36"	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
SSC	chr11	4215006	12A2p6	cell line	sgMsh2	4215006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	50	0	0	NA	exonic	Tbc1d10a	synonymous SNV	Tbc1d10a:NM_134023:exon9:c.A1356G:p.T452T	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9927756	CAG	synonymous	NA	NA	NA	NA
SSC	chr11	4816104	12A2p6	cell line	sgMsh2	4816104	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	169	0	0	NA	exonic	Nf2	nonsynonymous SNV	"Nf2:NM_001361675:exon3:c.C302T:p.A101V,Nf2:NM_001361676:exon3:c.C302T:p.A101V,Nf2:NM_001252250:exon4:c.C425T:p.A142V,Nf2:NM_001252251:exon4:c.C425T:p.A142V,Nf2:NM_001252252:exon4:c.C425T:p.A142V,Nf2:NM_001252253:exon4:c.C311T:p.A104V,Nf2:NM_001361677:exon4:c.C425T:p.A142V,Nf2:NM_010898:exon4:c.C425T:p.A142V"	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999981	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	6402416	12A2p6	cell line	sgMsh2	6402416	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	123	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.C1774A:p.L592M,Zmiz2:NM_028601:exon14:c.C1870A:p.L624M"	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9798044	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	6598026	12A2p6	cell line	sgMsh2	6598026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	133	0	0	NA	exonic	Nacad	synonymous SNV	Nacad:NM_001081652:exon7:c.T4479C:p.S1493S	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9757865	CAC	synonymous	NA	NA	NA	NA
SSC	chr11	7139118	12A2p6	cell line	sgMsh2	7139118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	81	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon8:c.A1531G:p.M511V	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9991543	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	9273928	12A2p6	cell line	sgMsh2	9273928	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	197	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon11:c.T1306A:p.S436T	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.998844	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	9567801	12A2p6	cell line	sgMsh2	9567801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	141	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon50:c.C13402A:p.L4468I	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	9622002	12A2p6	cell line	sgMsh2	9622002	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	60	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon57:c.A14562T:p.L4854F	11qA1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9963779	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	14599478	12A2p6	cell line	sgMsh2	14599478	C	A	SNV	Mutect2;Vardict	2	0.055	74	0	0	NA	exonic	Pom121l12	synonymous SNV	Pom121l12:NM_001164166:exon1:c.C183A:p.T61T	11qA2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.235563021	3	0.9987499	CCC	synonymous	NA	NA	NA	NA
SSC	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	143	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999886	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	22137982	12A2p6	cell line	sgMsh2	22137982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	95	0	0	NA	exonic	Ehbp1	synonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1176G:p.E392E,Ehbp1:NM_153078:exon11:c.A1101G:p.E367E"	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	GTT	synonymous	NA	NA	NA	NA
SSC	chr11	22138040	12A2p6	cell line	sgMsh2	22138040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	119	0	0	NA	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1118G:p.E373G,Ehbp1:NM_153078:exon11:c.A1043G:p.E348G"	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9943686	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	23333806	12A2p6	cell line	sgMsh2	23333806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	100	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon3:c.A499G:p.I167V	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	23426659	12A2p6	cell line	sgMsh2	23426659	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	56	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon43:c.A5753G:p.Y1918C	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.389749725	2	0.8362723	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	23625036	12A2p6	cell line	sgMsh2	23625036	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	91	0	0	NA	exonic	0610010F05Rik	synonymous SNV	0610010F05Rik:NM_027860:exon4:c.T237G:p.G79G	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.9802596	GAC	synonymous	NA	NA	NA	NA
SSC	chr11	23625084	12A2p6	cell line	sgMsh2	23625084	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	77	0	0	NA	exonic	0610010F05Rik	nonsynonymous SNV	0610010F05Rik:NM_027860:exon4:c.T189A:p.S63R	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	24085488	12A2p6	cell line	sgMsh2	24085488	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	103	0	0	NA	exonic	Bcl11a	nonsynonymous SNV	"Bcl11a:NM_001159289:exon2:c.C223A:p.L75I,Bcl11a:NM_001159290:exon2:c.C67A:p.L23I,Bcl11a:NM_001242934:exon2:c.C223A:p.L75I,Bcl11a:NM_016707:exon2:c.C223A:p.L75I"	11qA3.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9986436	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	26483301	12A2p6	cell line	sgMsh2	26483301	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	66	0	0	NA	exonic	Vrk2	nonsynonymous SNV	"Vrk2:NM_001252447:exon11:c.T880A:p.Y294N,Vrk2:NM_027260:exon11:c.T880A:p.Y294N"	11qA3.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9976086	TAC	nonsynonymous	ACAT	8	ACATACAT	NA
SSC	chr11	28910630	12A2p6	cell line	sgMsh2	28910630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	137	0	0	NA	exonic	Efemp1	nonsynonymous SNV	Efemp1:NM_146015:exon5:c.G538T:p.G180W	11qA3.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999826	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	30454689	12A2p6	cell line	sgMsh2	30454689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	125	0	0	NA	exonic	4930505A04Rik	synonymous SNV	4930505A04Rik:NM_001100394:exon2:c.T213C:p.N71N	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	TAT	synonymous	NA	NA	NA	NA
SSC	chr11	30845277	12A2p6	cell line	sgMsh2	30845277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	161	0	0	NA	exonic	Psme4	synonymous SNV	Psme4:NM_134013:exon33:c.A3786G:p.E1262E	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9623589	AAT	synonymous	NA	NA	NA	NA
SSC	chr11	30845305	12A2p6	cell line	sgMsh2	30845305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	162	0	0	NA	exonic	Psme4	nonsynonymous SNV	Psme4:NM_134013:exon33:c.A3814C:p.T1272P	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9998568	AAC	nonsynonymous	A	5	AAAAA	NA
SSC	chr11	30891948	12A2p6	cell line	sgMsh2	30891948	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	183	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.A852C:p.Q284H	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999993	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	218	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	81	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9977286	CTT	synonymous	NA	NA	NA	NA
SSC	chr11	33213420	12A2p6	cell line	sgMsh2	33213420	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	81	0	0	NA	exonic	Ranbp17	synonymous SNV	"Ranbp17:NM_023146:exon28:c.C3249T:p.S1083S,Ranbp17:NM_001362875:exon29:c.C3309T:p.S1103S"	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9884806	GGC	synonymous	NA	NA	NA	NA
SSC	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	122	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999508	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	34809820	12A2p6	cell line	sgMsh2	34809820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	57	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon12:c.C1702T:p.P568S	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9955432	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	34825436	12A2p6	cell line	sgMsh2	34825436	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	121	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon3:c.A260T:p.K87M	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	35632828	12A2p6	cell line	sgMsh2	35632828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	80	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon19:c.A2090G:p.K697R	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8389397	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	35841755	12A2p6	cell line	sgMsh2	35841755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	56	0	0	NA	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon21:c.A3125G:p.K1042R	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9952245	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
SSC	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	83	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9985833	CAC	synonymous	NA	NA	NA	NA
SSC	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	147	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9999658	GTT	synonymous	NA	NA	NA	NA
SSC	chr11	36068389	12A2p6	cell line	sgMsh2	36068389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	131	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon16:c.T3236C:p.L1079P,Tenm2:NM_011856:exon17:c.T3329C:p.L1110P"	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	36221410	12A2p6	cell line	sgMsh2	36221411	TT	AA	DBS	Mutect2;Vardict	2	0.257	117	0	0	NA	exonic	Tenm2	nonframeshift substitution	Tenm2:NM_011856:exon6:c.1306_1307TT:p.K436L	11qA4	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	36944085	12A2p6	cell line	sgMsh2	36944085	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	40	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon1:c.G82T:p.D28Y,Tenm2:NM_011856:exon1:c.G82T:p.D28Y"	11qA5	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9780758	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	40710181	12A2p6	cell line	sgMsh2	40710181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	233	0	0	NA	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1361G:p.D454G	11qA5	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	43776045	12A2p6	cell line	sgMsh2	43776045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	18	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon2:c.A1364G:p.E455G,Adra1b:NM_001284380:exon4:c.A1364G:p.E455G,Adra1b:NM_001284381:exon5:c.A1364G:p.E455G"	11qB1.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9371498	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	43835686	12A2p6	cell line	sgMsh2	43835686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	85	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon1:c.A403G:p.S135G,Adra1b:NM_001284380:exon3:c.A403G:p.S135G,Adra1b:NM_001284381:exon4:c.A403G:p.S135G"	11qB1.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993592	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	46150613	12A2p6	cell line	sgMsh2	46150613	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	119	0	0	NA	exonic	Nipal4	synonymous SNV	Nipal4:NM_172524:exon6:c.A754C:p.R252R	11qB1.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9997409	CTA	synonymous	NA	NA	NA	NA
SSC	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	110	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	ATG	synonymous	NA	NA	NA	NA
SSC	chr11	49341357	12A2p6	cell line	sgMsh2	49341357	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	351	0	0	NA	exonic	Olfr1390	frameshift deletion	Olfr1390:NM_147065:exon1:c.824delT:p.Y277Ifs*10	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	374	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	49430691	12A2p6	cell line	sgMsh2	49430691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	295	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T214C:p.C72R	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	1.30E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	49430856	12A2p6	cell line	sgMsh2	49430856	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	280	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T379A:p.C127S	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	1.85E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	49564852	12A2p6	cell line	sgMsh2	49564852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	365	0	0	NA	exonic	Olfr1380	synonymous SNV	Olfr1380:NM_207573:exon1:c.A930G:p.S310S	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
SSC	chr11	49681178	12A2p6	cell line	sgMsh2	49681178	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	131	0	0	NA	exonic	Cnot6	synonymous SNV	"Cnot6:NM_001290741:exon9:c.A990T:p.V330V,Cnot6:NM_001363356:exon9:c.A990T:p.V330V,Cnot6:NM_001363357:exon9:c.A690T:p.V230V,Cnot6:NM_212484:exon9:c.A975T:p.V325V"	11qB1.2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	GTA	synonymous	NA	NA	NA	NA
SSC	chr11	50234500	12A2p6	cell line	sgMsh2	50234500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	198	0	0	NA	exonic	Mgat4b	nonsynonymous SNV	Mgat4b:NM_145926:exon14:c.C1601T:p.P534L	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9953349	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	51825013	12A2p6	cell line	sgMsh2	51825013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	49	0	0	NA	exonic	Jade2	nonsynonymous SNV	"Jade2:NM_199299:exon9:c.C1364T:p.A455V,Jade2:NM_001357588:exon10:c.C1580T:p.A527V"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9922605	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	52037476	12A2p6	cell line	sgMsh2	52037476	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	281	0	0	NA	exonic	Cdkl3	frameshift deletion	Cdkl3:NM_153785:exon13:c.1771delT:p.S594Pfs*8	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
SSC	chr11	53537784	12A2p6	cell line	sgMsh2	53537784	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	77	0	0	NA	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon9:c.G1155A:p.E385E,Septin8:NM_001252333:exon9:c.G1149A:p.E383E,Septin8:NM_001347496:exon9:c.G1155A:p.E385E,Septin8:NM_001361968:exon9:c.G1149A:p.E383E,Septin8:NM_001361969:exon9:c.G969A:p.E323E,Septin8:NM_033144:exon9:c.G1155A:p.E385E"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.338354157	3	7.73E-06	AGG	synonymous	NA	NA	NA	NA
SSC	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	64	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	195	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	AAC	nonsynonymous	A	5	AAAAA	NA
SSC	chr11	58220139	12A2p6	cell line	sgMsh2	58220139	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	222	0	0	NA	exonic	Irgm2	nonsynonymous SNV	Irgm2:NM_019440:exon2:c.G655T:p.V219L	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	4.86E-08	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	58597595	12A2p6	cell line	sgMsh2	58597595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	155	0	0	NA	exonic	Olfr324	synonymous SNV	Olfr324:NM_001011743:exon1:c.T204C:p.A68A	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.999995	CTC	synonymous	NA	NA	NA	NA
SSC	chr11	58918897	12A2p6	cell line	sgMsh2	58918897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	137	0	0	NA	exonic	Btnl10	nonsynonymous SNV	"Btnl10:NM_001363414:exon2:c.A28G:p.T10A,Btnl10:NM_138678:exon2:c.A28G:p.T10A"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.740952774	2	0.7252846	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	58994422	12A2p6	cell line	sgMsh2	58994422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	37	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon104:c.C24009T:p.F8003F	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9823777	GGA	synonymous	NA	NA	NA	NA
SSC	chr11	59042160	12A2p6	cell line	sgMsh2	59042160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	88	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon54:c.T14389C:p.L4797L,Obscn:NM_199152:exon61:c.T16348C:p.L5450L"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7381772	AAC	synonymous	NA	NA	NA	NA
SSC	chr11	59063667	12A2p6	cell line	sgMsh2	59063667	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	100	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon41:c.11088delT:p.F3696Lfs*1,Obscn:NM_199152:exon43:c.11715delT:p.F3905Lfs*1"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC	chr11	59082657	12A2p6	cell line	sgMsh2	59082657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	45	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon19:c.T5847C:p.R1949R,Obscn:NM_199152:exon21:c.T6474C:p.R2158R"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9898092	CAC	synonymous	NA	NA	NA	NA
SSC	chr11	59131555	12A2p6	cell line	sgMsh2	59131555	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	24	0	0	NA	exonic	Obscn	stopgain	"Obscn:NM_001171512:exon6:c.T2363A:p.L788X,Obscn:NM_199152:exon6:c.T2363A:p.L788X"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9576523	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	59184498	12A2p6	cell line	sgMsh2	59184498	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	0	0	NA	exonic	Guk1	nonsynonymous SNV	"Guk1:NM_001159410:exon7:c.C526A:p.L176M,Guk1:NM_008193:exon7:c.C562A:p.L188M"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999959	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	59503502	12A2p6	cell line	sgMsh2	59503502	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	46	0	0	NA	exonic	Zkscan17	nonsynonymous SNV	"Zkscan17:NM_001130529:exon4:c.T212C:p.L71S,Zkscan17:NM_172941:exon4:c.T272C:p.L91S"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9872384	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	59769987	12A2p6	cell line	sgMsh2	59769987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	92	0	0	NA	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_012027:exon21:c.A2897G:p.K966R,Mprip:NM_201245:exon21:c.A2897G:p.K966R,Mprip:NM_001368931:exon22:c.A7055G:p.K2352R"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7345027	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	59976887	12A2p6	cell line	sgMsh2	59976887	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	54	0	0	NA	exonic	Pemt	nonsynonymous SNV	"Pemt:NM_001290011:exon4:c.T418G:p.F140V,Pemt:NM_001290012:exon4:c.T307G:p.F103V,Pemt:NM_001290013:exon4:c.T307G:p.F103V,Pemt:NM_008819:exon4:c.T307G:p.F103V"	11qB1.3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9945173	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	60476821	12A2p6	cell line	sgMsh2	60476821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	94	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_001103171:exon2:c.A406G:p.K136E,Myo15:NM_010862:exon2:c.A406G:p.K136E"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9981433	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	60865023	12A2p6	cell line	sgMsh2	60865023	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	75	0	0	NA	exonic	Tmem11	nonsynonymous SNV	"Tmem11:NM_173453:exon2:c.C382A:p.P128T,Tmem11:NM_001168507:exon3:c.C340A:p.P114T"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.231280057	3	0.9991148	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	61449691	12A2p6	cell line	sgMsh2	61449691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	42	0	0	NA	exonic	Rnf112	nonsynonymous SNV	"Rnf112:NM_001291024:exon14:c.T1612C:p.S538P,Rnf112:NM_001359130:exon14:c.T1756C:p.S586P,Rnf112:NM_009548:exon15:c.T1681C:p.S561P"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.9472055	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	61492914	12A2p6	cell line	sgMsh2	61492914	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	75	0	0	NA	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon2:c.T388A:p.F130I,Mapk7:NM_001291037:exon2:c.T178A:p.F60I,Mapk7:NM_001291033:exon3:c.T181A:p.F61I,Mapk7:NM_011841:exon3:c.T388A:p.F130I"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9629592	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	79	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.655293494	2	0.09797952	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	61779733	12A2p6	cell line	sgMsh2	61779733	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	54	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon26:c.T2996A:p.L999H	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9945173	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	61834867	12A2p6	cell line	sgMsh2	61834867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	113	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon6:c.A382G:p.I128V	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999082	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	62118270	12A2p6	cell line	sgMsh2	62118270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	166	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.T611C:p.F204S,Specc1:NM_001281818:exon4:c.T851C:p.F284S,Specc1:NM_001310526:exon4:c.T851C:p.F284S"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999977	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	62119127	12A2p6	cell line	sgMsh2	62119127	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	147	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.A1468G:p.T490A,Specc1:NM_001281818:exon4:c.A1708G:p.T570A,Specc1:NM_001310526:exon4:c.A1708G:p.T570A"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999913	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	62249372	12A2p6	cell line	sgMsh2	62249372	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	51	0	0	NA	exonic	Adora2b	nonsynonymous SNV	Adora2b:NM_007413:exon1:c.A271C:p.S91R	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9932568	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	62334572	12A2p6	cell line	sgMsh2	62334572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	119	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon35:c.A5362G:p.R1788G,Ncor1:NM_011308:exon35:c.A5161G:p.R1721G"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9998694	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	62595216	12A2p6	cell line	sgMsh2	62595216	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	169	0	0	NA	exonic	Trpv2	nonsynonymous SNV	"Trpv2:NM_001382492:exon11:c.G1765A:p.V589I,Trpv2:NM_001382489:exon12:c.G1939A:p.V647I,Trpv2:NM_001382491:exon12:c.G1939A:p.V647I,Trpv2:NM_011706:exon13:c.G1939A:p.V647I,Trpv2:NM_001382490:exon14:c.G1939A:p.V647I"	11qB2	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.162752632	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	63070310	12A2p6	cell line	sgMsh2	63070310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	210	0	0	NA	exonic	Tekt3	nonsynonymous SNV	Tekt3:NM_027660:exon2:c.T304C:p.S102P	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	63094781	12A2p6	cell line	sgMsh2	63094781	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	58	0	0	NA	exonic	Tekt3	frameshift deletion	Tekt3:NM_027660:exon8:c.1412delA:p.K472Nfs*2	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr11	66145267	12A2p6	cell line	sgMsh2	66145267	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.225	85	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.G1316A:p.G439D	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9981922	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	66145269	12A2p6	cell line	sgMsh2	66145269	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.225	85	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.T1314A:p.D438E	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9981922	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	66155422	12A2p6	cell line	sgMsh2	66155422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	78	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon4:c.A893T:p.E298V	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.612463853	2	0.9643104	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	67025212	12A2p6	cell line	sgMsh2	67025212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	26	0	0	NA	exonic	Tmem220	synonymous SNV	"Tmem220:NM_001291042:exon1:c.T34C:p.L12L,Tmem220:NM_001291043:exon1:c.T34C:p.L12L,Tmem220:NM_177392:exon1:c.T34C:p.L12L"	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9629374	CTT	synonymous	NA	NA	NA	NA
SSC	chr11	67100859	12A2p6	cell line	sgMsh2	67100859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	147	0	0	NA	exonic	Myh3	nonsynonymous SNV	Myh3:NM_001099635:exon37:c.T5348C:p.M1783T	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9976459	ATG	nonsynonymous	GAA	9	GAAGAAGAA	NA
SSC	chr11	67185256	12A2p6	cell line	sgMsh2	67185256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	200	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon20:c.T2268A:p.I756I	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9955148	TTG	synonymous	CATTGA	13	CATTGACATTGAC	NA
SSC	chr11	67197288	12A2p6	cell line	sgMsh2	67197288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	172	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon40:c.T5729C:p.L1910P	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	264	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9987286	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	67243457	12A2p6	cell line	sgMsh2	67243457	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	315	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon11:c.T937G:p.F313V	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9995352	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	67289796	12A2p6	cell line	sgMsh2	67289796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	141	0	0	NA	exonic	Myh8	synonymous SNV	Myh8:NM_177369:exon16:c.T1857C:p.T619T	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.99996	CTC	synonymous	NA	NA	NA	NA
SSC	chr11	67881220	12A2p6	cell line	sgMsh2	67881220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	78	0	0	NA	exonic	Usp43	nonsynonymous SNV	"Usp43:NM_001291049:exon10:c.C1521A:p.S507R,Usp43:NM_173754:exon10:c.C1521A:p.S507R"	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9941023	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	68590905	12A2p6	cell line	sgMsh2	68590905	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	62	0	0	NA	exonic	Ccdc42	frameshift deletion	Ccdc42:NM_177779:exon4:c.324delA:p.A111Pfs*6	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr11	68784960	12A2p6	cell line	sgMsh2	68784960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	204	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon18:c.A2214G:p.K738K	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	AAG	synonymous	NA	NA	NA	NA
SSC	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	70	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9872228	AAC	synonymous	NA	NA	NA	NA
SSC	chr11	68814480	12A2p6	cell line	sgMsh2	68814480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	70	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon40:c.A5712G:p.Q1904Q	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8614368	AAA	synonymous	NA	NA	NA	NA
SSC	chr11	69106725	12A2p6	cell line	sgMsh2	69106725	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	27	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon19:c.T2725G:p.F909V,Per1:NM_011065:exon19:c.T2725G:p.F909V"	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	2	1	1	0.9653363	CTT	nonsynonymous	CCTTC	10	CCTTCCCTTC	NA
SSC	chr11	69314742	12A2p6	cell line	sgMsh2	69314743	TC	-	Deletion	Strelka2;Vardict	2	0.2174	46	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon9:c.1264_1265del:p.D422Cfs*13	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.931116376	NA	NA	ATC	frameshift	TC	12	TCTCTCTCTCTC	-2
SSC	chr11	69355376	12A2p6	cell line	sgMsh2	69355376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	51	0	0	NA	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon20:c.T3371C:p.L1124P	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9681624	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	69478799	12A2p6	cell line	sgMsh2	69478799	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	64	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon30:c.A4850C:p.E1617A	11qB3	chr11-3133045-69579350	4	2	2	0.96	4.11164545	NA	1	0.573917177	2	0.9634804	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	69736805	12A2p6	cell line	sgMsh2	69736805	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	72	0	0	NA	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon25:c.A4275G:p.G1425G	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9984218	GTC	synonymous	NA	NA	NA	NA
SSC	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	102	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.999803	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	69795867	12A2p6	cell line	sgMsh2	69795867	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	62	0	0	NA	exonic	Chrnb1	frameshift deletion	Chrnb1:NM_009601:exon1:c.13delG:p.A5Rfs*5	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.852309838	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC	chr11	69909053	12A2p6	cell line	sgMsh2	69909053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	96	0	0	NA	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon18:c.T3090C:p.D1030D,Neurl4:NM_001013414:exon19:c.T3162C:p.D1054D,Neurl4:NM_001291118:exon19:c.T3156C:p.D1052D"	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9997012	ATG	synonymous	NA	NA	NA	NA
SSC	chr11	70030599	12A2p6	cell line	sgMsh2	70030599	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	140	0	0	NA	exonic	Dlg4	stopgain	Dlg4:NM_007864:exon4:c.T155A:p.L52X	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.77949945	1	0.687931	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	70514560	12A2p6	cell line	sgMsh2	70514560	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	108	0	0	NA	exonic	Vmo1	stopgain	Vmo1:NM_001013607:exon1:c.43delG:p.V15fs*0	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	NA	NA	ACC	nonsynonymous	C	5	CCCCC	-1
SSC	chr11	70607790	12A2p6	cell line	sgMsh2	70607790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	33	0	0	NA	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_001045959:exon16:c.T1780C:p.Y594H,Mink1:NM_001045964:exon16:c.T1780C:p.Y594H,Mink1:NM_016713:exon16:c.T1780C:p.Y594H,Mink1:NM_176893:exon16:c.T1780C:p.Y594H"	11qB3	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	2	1	1	0.9768695	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	85	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9993592	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	72454163	12A2p6	cell line	sgMsh2	72454163	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	53	0	0	NA	exonic	Spns2	nonsynonymous SNV	"Spns2:NM_001276383:exon11:c.A1045C:p.S349R,Spns2:NM_153060:exon11:c.A1498C:p.S500R"	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.753801666	1	0.6779171	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	72550138	12A2p6	cell line	sgMsh2	72550138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	64	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon1:c.A71G:p.Y24C	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	2	1	1	0.9972535	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	73048053	12A2p6	cell line	sgMsh2	73048053	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	35	0	0	NA	exonic	Ncbp3	nonsynonymous SNV	Ncbp3:NM_025818:exon1:c.G154A:p.V52M	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9798067	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	73711263	12A2p6	cell line	sgMsh2	73711263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	228	0	0	NA	exonic	Zfp735	synonymous SNV	Zfp735:NM_001126489:exon4:c.T1032C:p.H344H	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	3.24E-08	ATA	synonymous	NA	NA	NA	NA
SSC	chr11	73787214	12A2p6	cell line	sgMsh2	73787214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	527	0	0	NA	exonic	Olfr390	nonsynonymous SNV	Olfr390:NM_146347:exon1:c.T275C:p.I92T	11qB4	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.997930614	1	1	ATC	nonsynonymous	CATC	9	CATCCATCC	NA
SSC	chr11	74365244	12A2p6	cell line	sgMsh2	74365244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	163	0	0	NA	exonic	Olfr412	nonsynonymous SNV	Olfr412:NM_001011851:exon1:c.A574G:p.T192A	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9999971	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	75167229	12A2p6	cell line	sgMsh2	75167229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	9	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T353C:p.V118A,Hic1:NM_010430:exon2:c.T833C:p.V278A"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	2	1	1	0.8882744	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	146	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9999907	CAC	synonymous	NA	NA	NA	NA
SSC	chr11	76797605	12A2p6	cell line	sgMsh2	76797605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	136	0	0	NA	exonic	Cpd	nonsynonymous SNV	Cpd:NM_007754:exon12:c.A2840G:p.Y947C	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.82232909	1	0.9409083	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	76949975	12A2p6	cell line	sgMsh2	76949975	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	129	0	0	NA	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon3:c.T227G:p.F76C	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9999697	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	77078398	12A2p6	cell line	sgMsh2	77078398	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	87	0	0	NA	exonic	Nsrp1	nonsynonymous SNV	Nsrp1:NM_001012309:exon1:c.A1C:p.M1L	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9994422	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	77824228	12A2p6	cell line	sgMsh2	77824228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	41	0	0	NA	exonic	Myo18a	synonymous SNV	"Myo18a:NM_001291214:exon12:c.G1443A:p.R481R,Myo18a:NM_011586:exon13:c.G2448A:p.R816R,Myo18a:NM_001291212:exon14:c.G2484A:p.R828R,Myo18a:NM_001291213:exon14:c.G2592A:p.R864R,Myo18a:NM_001291215:exon15:c.G1509A:p.R503R"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9865922	GGC	synonymous	NA	NA	NA	NA
SSC	chr11	77846442	12A2p6	cell line	sgMsh2	77846442	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	90	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon29:c.A3764C:p.D1255A,Myo18a:NM_011586:exon30:c.A4769C:p.D1590A,Myo18a:NM_001291212:exon31:c.A4805C:p.D1602A,Myo18a:NM_001291213:exon31:c.A4913C:p.D1638A,Myo18a:NM_001291215:exon32:c.A3830C:p.D1277A"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.77949945	1	0.7363441	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	77962904	12A2p6	cell line	sgMsh2	77962904	-	G	Insertion	Strelka2;Vardict	2	0.2727	22	0	0	NA	exonic	Sez6	frameshift insertion	"Sez6:NM_001291225:exon4:c.900dupG:p.D304Rfs*6,Sez6:NM_021286:exon4:c.900dupG:p.D304Rfs*6"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	NA	NA	CTG	frameshift	G	5	GGGGG	1
SSC	chr11	78219960	12A2p6	cell line	sgMsh2	78219960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	83	0	0	NA	exonic	Supt6	nonsynonymous SNV	Supt6:NM_009297:exon25:c.C3265A:p.L1089I	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.976515794	1	0.9985833	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	60	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9963779	CTG	synonymous	NA	NA	NA	NA
SSC	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	54	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	2	1	1	0.9945173	CTA	synonymous	NA	NA	NA	NA
SSC	chr11	80170715	12A2p6	cell line	sgMsh2	80170715	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	137	0	0	NA	exonic	Adap2	nonsynonymous SNV	Adap2:NM_172133:exon7:c.G695A:p.R232H	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.561068285	2	0.9999045	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	80242112	12A2p6	cell line	sgMsh2	80242112	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	167	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon8:c.T251G:p.F84C,Rhot1:NM_001163354:exon9:c.T671G:p.F224C,Rhot1:NM_001163355:exon9:c.T671G:p.F224C,Rhot1:NM_001362868:exon9:c.T671G:p.F224C,Rhot1:NM_021536:exon9:c.T671G:p.F224C,Rhot1:NM_001362869:exon10:c.T410G:p.F137C"	11qB5	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9999978	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	82722463	12A2p6	cell line	sgMsh2	82722463	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	242	0	0	NA	exonic	Cct6b	synonymous SNV	"Cct6b:NM_001291242:exon12:c.T1251G:p.G417G,Cct6b:NM_009839:exon12:c.T1368G:p.G456G"	11qC	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	1.29E-08	AAC	synonymous	NA	NA	NA	NA
SSC	chr11	82789697	12A2p6	cell line	sgMsh2	82789697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	101	0	0	NA	exonic	Lig3	stopgain	"Lig3:NM_001291245:exon6:c.C1198T:p.Q400X,Lig3:NM_001291246:exon6:c.C1195T:p.Q399X,Lig3:NM_001291247:exon6:c.C1195T:p.Q399X,Lig3:NM_010716:exon6:c.C1198T:p.Q400X"	11qC	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	0.963666902	1	0.9992751	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	82898806	12A2p6	cell line	sgMsh2	82898806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	56	0	0	NA	exonic	Fndc8	synonymous SNV	Fndc8:NM_030224:exon3:c.A789T:p.V263V	11qC	chr11-69600961-82929860	4	3	1	0.96	4.11164545	NA	1	1	1	0.9952245	TAG	synonymous	NA	NA	NA	NA
SSC	chr11	83753866	12A2p6	cell line	sgMsh2	83753866	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	20	0	0	NA	exonic	Heatr6	synonymous SNV	Heatr6:NM_145432:exon1:c.C144T:p.S48S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9448483	CCC	synonymous	NA	NA	NA	NA
SSC	chr11	83955095	12A2p6	cell line	sgMsh2	83955095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	184	0	0	NA	exonic	Ddx52	synonymous SNV	Ddx52:NM_030096:exon10:c.T1245C:p.P415P	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999987	CTG	synonymous	NA	NA	NA	NA
SSC	chr11	84522199	12A2p6	cell line	sgMsh2	84522199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	66	0	0	NA	exonic	Lhx1	nonsynonymous SNV	Lhx1:NM_008498:exon2:c.A260G:p.N87S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9818677	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	84878147	12A2p6	cell line	sgMsh2	84878147	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	165	0	0	NA	exonic	Pigw	frameshift deletion	"Pigw:NM_001077636:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_001363112:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_027388:exon2:c.355delA:p.I119Sfs*2"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	154	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999947	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	85457925	12A2p6	cell line	sgMsh2	85457925	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	186	0	0	NA	exonic	Bcas3	frameshift deletion	"Bcas3:NM_001166643:exon9:c.642delA:p.K216Nfs*14,Bcas3:NM_001166642:exon10:c.642delA:p.K216Nfs*14,Bcas3:NM_138681:exon10:c.642delA:p.K216Nfs*14"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.312656373	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr11	86504273	12A2p6	cell line	sgMsh2	86504273	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	146	0	0	NA	exonic	Rps6kb1	nonsynonymous SNV	"Rps6kb1:NM_001114334:exon14:c.C1333T:p.P445S,Rps6kb1:NM_001363162:exon15:c.C1174T:p.P392S"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999158	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	113	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	87402658	12A2p6	cell line	sgMsh2	87402658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	131	0	0	NA	exonic	Rad51c	nonsynonymous SNV	"Rad51c:NM_001291440:exon2:c.T371C:p.I124T,Rad51c:NM_053269:exon2:c.T317C:p.I106T"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	87542566	12A2p6	cell line	sgMsh2	87542566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	141	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon26:c.G4002A:p.K1334K,Tex14:NM_031386:exon26:c.G3966A:p.K1322K"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9922051	AGG	synonymous	NA	NA	NA	NA
SSC	chr11	87567526	12A2p6	cell line	sgMsh2	87567526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	145	0	0	NA	exonic	Septin4	nonsynonymous SNV	Septin4:NM_001368775:exon1:c.T725G:p.I242S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8322964	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	87730197	12A2p6	cell line	sgMsh2	87730197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	140	0	0	NA	exonic	Rnf43	synonymous SNV	"Rnf43:NM_001363437:exon7:c.G534A:p.Q178Q,Rnf43:NM_172448:exon8:c.G915A:p.Q305Q"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999859	AGC	synonymous	NA	NA	NA	NA
SSC	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	61	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	88952463	12A2p6	cell line	sgMsh2	88952463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	122	0	0	NA	exonic	Scpep1	synonymous SNV	Scpep1:NM_029023:exon2:c.T168C:p.Y56Y	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999508	AAT	synonymous	NA	NA	NA	NA
SSC	chr11	88964817	12A2p6	cell line	sgMsh2	88964817	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	229	0	0	NA	exonic	Elobl	frameshift deletion	Elobl:NM_001360780:exon3:c.419delC:p.P140Lfs*28	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.976515794	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	127	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	89440739	12A2p6	cell line	sgMsh2	89440739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	105	0	0	NA	exonic	Ankfn1	synonymous SNV	Ankfn1:NM_001327810:exon13:c.A1566G:p.T522T	11qC	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.99984	CTG	synonymous	AGCTG	10	AGCTGAGCTG	NA
SSC	chr11	94334532	12A2p6	cell line	sgMsh2	94334532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	137	0	0	NA	exonic	Ankrd40	nonsynonymous SNV	"Ankrd40:NM_027799:exon3:c.A388G:p.T130A,Ankrd40:NM_146024:exon3:c.A388G:p.T130A"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999826	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	94465827	12A2p6	cell line	sgMsh2	94465827	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	73	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon3:c.T482A:p.I161N,Cacna1g:NM_001177888:exon3:c.T482A:p.I161N,Cacna1g:NM_001177890:exon3:c.T482A:p.I161N,Cacna1g:NM_009783:exon3:c.T482A:p.I161N"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	94491389	12A2p6	cell line	sgMsh2	94491389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	24	0	0	NA	exonic	Epn3	nonsynonymous SNV	"Epn3:NM_001361558:exon9:c.T1592C:p.L531P,Epn3:NM_027984:exon10:c.T1673C:p.L558P"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9576523	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	141	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	112	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999016	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	96961477	12A2p6	cell line	sgMsh2	96961477	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	57	0	0	NA	exonic	Sp2	frameshift deletion	"Sp2:NM_001080964:exon3:c.617delG:p.G206Vfs*3,Sp2:NM_001363226:exon3:c.602delG:p.G201Vfs*3,Sp2:NM_030220:exon3:c.620delG:p.G207Vfs*3,Sp2:NM_001363225:exon4:c.602delG:p.G201Vfs*3"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.809480198	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr11	97022316	12A2p6	cell line	sgMsh2	97022316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	78	0	0	NA	exonic	Sp6	nonsynonymous SNV	"Sp6:NM_001363230:exon2:c.T854C:p.V285A,Sp6:NM_031183:exon2:c.T854C:p.V285A"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.663859422	2	0.8753105	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	97181660	12A2p6	cell line	sgMsh2	97181660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	292	0	0	NA	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon4:c.A448G:p.T150A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9999953	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	98152821	12A2p6	cell line	sgMsh2	98152821	C	-	Deletion	Mutect2;Vardict	2	0.244	50	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
SSC	chr11	98210931	12A2p6	cell line	sgMsh2	98210931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	153	0	0	NA	exonic	Cdk12	synonymous SNV	"Cdk12:NM_001109626:exon2:c.T1614C:p.T538T,Cdk12:NM_001109628:exon2:c.T1614C:p.T538T,Cdk12:NM_026952:exon2:c.T1614C:p.T538T"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9590043	CTA	synonymous	NA	NA	NA	NA
SSC	chr11	98250334	12A2p6	cell line	sgMsh2	98250334	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	70	0	0	NA	exonic	Cdk12	frameshift deletion	"Cdk12:NM_001109626:exon14:c.4400delG:p.A1469Lfs*34,Cdk12:NM_001109628:exon14:c.4373delG:p.A1460Lfs*34"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.655293494	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr11	98488928	12A2p6	cell line	sgMsh2	98488928	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	68	0	0	NA	exonic	Ikzf3	frameshift deletion	Ikzf3:NM_011771:exon5:c.513delA:p.K171Nfs*87	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	110	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	AAG	synonymous	NA	NA	NA	NA
SSC	chr11	98831395	12A2p6	cell line	sgMsh2	98831395	-	C	Insertion	Strelka2;Vardict	2	0.2143	84	0	0	NA	exonic	Casc3	frameshift insertion	Casc3:NM_138660:exon12:c.2059dupC:p.P690Tfs*1	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.917839187	NA	NA	AGC	frameshift	C	8	CCCCCCCC	1
SSC	chr11	99780487	12A2p6	cell line	sgMsh2	99780487	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.251	358	0	0	NA	exonic	Krtap4-8	nonsynonymous SNV	Krtap4-8:NM_001085547:exon1:c.G157A:p.V53M	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	99873936	12A2p6	cell line	sgMsh2	99873936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	96	0	0	NA	exonic	Krtap9-1	nonsynonymous SNV	Krtap9-1:NM_015741:exon1:c.T497C:p.V166A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9995165	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	100132047	12A2p6	cell line	sgMsh2	100132047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	0	0	NA	exonic	Krt15	nonsynonymous SNV	Krt15:NM_008469:exon8:c.A1341T:p.K447N	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.723820918	2	0.6481265	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	100413732	12A2p6	cell line	sgMsh2	100413732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	84	0	0	NA	exonic	P3h4	nonsynonymous SNV	"P3h4:NM_001378981:exon3:c.A682G:p.S228G,P3h4:NM_176830:exon3:c.A682G:p.S228G"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	CTG	nonsynonymous	TGC	9	TGCTGCTGC	NA
SSC	chr11	100498252	12A2p6	cell line	sgMsh2	100498252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	115	0	0	NA	exonic	Acly	nonsynonymous SNV	"Acly:NM_134037:exon15:c.T1673C:p.V558A,Acly:NM_001199296:exon16:c.T1703C:p.V568A"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	100741796	12A2p6	cell line	sgMsh2	100741796	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	79	0	0	NA	exonic	Kcnh4	nonsynonymous SNV	Kcnh4:NM_001081194:exon16:c.C2864A:p.A955D	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	101165151	12A2p6	cell line	sgMsh2	101165151	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	92	0	0	NA	exonic	Plekhh3	synonymous SNV	"Plekhh3:NM_001346769:exon9:c.C1321A:p.R441R,Plekhh3:NM_146030:exon9:c.C1321A:p.R441R"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	CGG	synonymous	NA	NA	NA	NA
SSC	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	105	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.99984	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	102268883	12A2p6	cell line	sgMsh2	102268883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	22	0	0	NA	exonic	Asb16	stopgain	Asb16:NM_148953:exon1:c.G61T:p.E21X	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9516513	AGA	nonsynonymous	AG	8	AGAGAGAG	NA
SSC	chr11	102435775	12A2p6	cell line	sgMsh2	102435775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	44	0	0	NA	exonic	Grn	nonsynonymous SNV	Grn:NM_008175:exon11:c.T1240C:p.C414R	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9890849	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	102466479	12A2p6	cell line	sgMsh2	102466479	A	-	Deletion	Strelka2;Vardict	2	0.2192	73	0	0	NA	exonic	Itga2b	stopgain	Itga2b:NM_010575:exon6:c.665delT:p.L222fs*0	11qD	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.938825711	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
SSC	chr11	102886351	12A2p6	cell line	sgMsh2	102886351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	141	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.A980G:p.H327R	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	66	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GTC	synonymous	NA	NA	NA	NA
SSC	chr11	104517477	12A2p6	cell line	sgMsh2	104517477	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	105	0	0	NA	exonic	Cdc27	stopgain	"Cdc27:NM_001285990:exon12:c.G1219T:p.G407X,Cdc27:NM_001285988:exon13:c.G1621T:p.G541X,Cdc27:NM_001285989:exon13:c.G1603T:p.G535X,Cdc27:NM_145436:exon13:c.G1606T:p.G536X"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.201299308	3	0.999997	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	105281103	12A2p6	cell line	sgMsh2	105281103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	69	0	0	NA	exonic	Tlk2	nonsynonymous SNV	"Tlk2:NM_001294329:exon20:c.C1786A:p.L596M,Tlk2:NM_001361996:exon20:c.C1906A:p.L636M,Tlk2:NM_001112705:exon22:c.C2098A:p.L700M,Tlk2:NM_001294331:exon22:c.C2002A:p.L668M"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9435082	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	106149600	12A2p6	cell line	sgMsh2	106149600	C	-	Deletion	Mutect2;Vardict	2	0.058	143	0	0	NA	exonic	Map3k3	frameshift deletion	Map3k3:NM_011947:exon11:c.990delC:p.R332Vfs*74	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.248411913	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr11	106245359	12A2p6	cell line	sgMsh2	106245359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	174	0	0	NA	exonic	Ddx42	synonymous SNV	"Ddx42:NM_001361642:exon9:c.A1149G:p.G383G,Ddx42:NM_001361640:exon11:c.A1446G:p.G482G,Ddx42:NM_001361644:exon11:c.A1143G:p.G381G,Ddx42:NM_001361643:exon15:c.A1143G:p.G381G,Ddx42:NM_028074:exon16:c.A1935G:p.G645G"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999987	GAG	synonymous	NA	NA	NA	NA
SSC	chr11	106320885	12A2p6	cell line	sgMsh2	106320885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	87	0	0	NA	exonic	Scn4a	synonymous SNV	Scn4a:NM_133199:exon24:c.T4305C:p.F1435F	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	CAA	synonymous	NA	NA	NA	NA
SSC	chr11	106324595	12A2p6	cell line	sgMsh2	106324595	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	222	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon19:c.A3554C:p.N1185T	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	4.86E-08	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	107073916	12A2p6	cell line	sgMsh2	107073916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	219	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon11:c.A4106G:p.N1369S,Bptf:NM_176850:exon11:c.A4106G:p.N1369S"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	107076633	12A2p6	cell line	sgMsh2	107076633	T	-	Deletion	Strelka2;Vardict	2	0.168	125	0	0	NA	exonic	Bptf	stopgain	"Bptf:NM_001359590:exon10:c.2920delA:p.M974fs*0,Bptf:NM_176850:exon10:c.2920delA:p.M974fs*0"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.719537954	NA	NA	ATT	nonsynonymous	T	8	TTTTTTTT	-1
SSC	chr11	110086558	12A2p6	cell line	sgMsh2	110086558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	59	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon4:c.T374C:p.V125A	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9938298	CAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr11	115250473	12A2p6	cell line	sgMsh2	115250473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	26	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon15:c.T2818C:p.C940R	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9629374	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	115609286	12A2p6	cell line	sgMsh2	115609286	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	95	0	0	NA	exonic	Mif4gd	synonymous SNV	"Mif4gd:NM_001243586:exon3:c.C342T:p.Y114Y,Mif4gd:NM_027162:exon3:c.C342T:p.Y114Y,Mif4gd:NM_001243584:exon4:c.C342T:p.Y114Y,Mif4gd:NM_001243587:exon4:c.C342T:p.Y114Y"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	GGT	synonymous	NA	NA	NA	NA
SSC	chr11	115822071	12A2p6	cell line	sgMsh2	115822071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	88	0	0	NA	exonic	Tsen54	frameshift deletion	Tsen54:NM_029557:exon10:c.1383delA:p.N463Tfs*27	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.719537954	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	91	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9978342	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	116023510	12A2p6	cell line	sgMsh2	116023510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	150	0	0	NA	exonic	H3f3b	nonsynonymous SNV	H3f3b:NM_008211:exon4:c.G308T:p.G103V	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.749518702	2	0.683267	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	116221959	12A2p6	cell line	sgMsh2	116221959	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	59	0	0	NA	exonic	Evpl	nonsynonymous SNV	Evpl:NM_025276:exon22:c.G4904A:p.R1635Q	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	2	1	1	0.9961186	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	116607343	12A2p6	cell line	sgMsh2	116607343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon3:c.A29G:p.N10S,Rhbdf2:NM_172572:exon3:c.A29G:p.N10S"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9752483	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	55	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9927177	CTT	synonymous	NA	NA	NA	NA
SSC	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	79	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	117773074	12A2p6	cell line	sgMsh2	117773074	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	53	0	0	NA	exonic	Tmc6	frameshift deletion	Tmc6:NM_145439:exon12:c.1405delG:p.V469Wfs*23	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.73666981	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr11	118066351	12A2p6	cell line	sgMsh2	118066351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	60	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon54:c.A8399G:p.Y2800C	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9963779	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	119351006	12A2p6	cell line	sgMsh2	119351006	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	80	0	0	NA	exonic	Sgsh	synonymous SNV	Sgsh:NM_018822:exon3:c.G273A:p.L91L	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990936	GCA	synonymous	NA	NA	NA	NA
SSC	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	94	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	119440808	12A2p6	cell line	sgMsh2	119440808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	198	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon29:c.A6845G:p.H2282R	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	119499548	12A2p6	cell line	sgMsh2	119499548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	31	0	0	NA	exonic	Endov	nonsynonymous SNV	"Endov:NM_177394:exon2:c.A1G:p.M1V,Endov:NM_001164636:exon3:c.A250G:p.M84V"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9735165	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.153	25	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.655293494	1	0.000726831	CAG	synonymous	NA	NA	NA	NA
SSC	chr11	120011210	12A2p6	cell line	sgMsh2	120011210	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.241	56	0	0	NA	exonic	Aatk	nonsynonymous SNV	"Aatk:NM_001377503:exon8:c.G1828T:p.G610C,Aatk:NM_001198785:exon11:c.G2359T:p.G787C,Aatk:NM_001198787:exon11:c.G2188T:p.G730C,Aatk:NM_007377:exon11:c.G2188T:p.G730C"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9952245	CCC	nonsynonymous	CCCA	9	CCCACCCAC	NA
SSC	chr11	120105448	12A2p6	cell line	sgMsh2	120105448	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	215	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001164799:exon16:c.A2798T:p.E933V,Slc38a10:NM_001164800:exon16:c.A2795T:p.E932V,Slc38a10:NM_001361697:exon16:c.A2573T:p.E858V,Slc38a10:NM_001361698:exon16:c.A2558T:p.E853V,Slc38a10:NM_001164798:exon17:c.A2819T:p.E940V,Slc38a10:NM_001361696:exon17:c.A2816T:p.E939V,Slc38a10:NM_001361699:exon17:c.A2147T:p.E716V,Slc38a10:NM_024249:exon17:c.A2822T:p.E941V"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr11	120284409	12A2p6	cell line	sgMsh2	120284409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	44	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon18:c.C5308T:p.R1770C	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9890849	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	76	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9962426	TAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	127	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	CTG	synonymous	NA	NA	NA	NA
SSC	chr11	120377089	12A2p6	cell line	sgMsh2	120377089	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	49	0	0	NA	exonic	Faap100	stopgain	Faap100:NM_027980:exon3:c.857delT:p.L286fs*0	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
SSC	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	71	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9983086	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr11	120595036	12A2p6	cell line	sgMsh2	120595036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.27	194	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon5:c.A697G:p.K233E	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	TTT	nonsynonymous	GCT	9	GCTGCTGCT	NA
SSC	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	67	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr11	121448988	12A2p6	cell line	sgMsh2	121448988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	79	0	0	NA	exonic	Fn3k	nonsynonymous SNV	Fn3k:NM_022014:exon5:c.T575C:p.L192P	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	3501299	12A2p6	cell line	sgMsh2	3501299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	201	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3040G:p.R1014G,Asxl2:NM_001270988:exon12:c.A3184G:p.R1062G"	12qA1.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	3591924	12A2p6	cell line	sgMsh2	3591924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	201	0	0	NA	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001162465:exon3:c.T86C:p.V29A,Dtnb:NM_001355528:exon3:c.T86C:p.V29A,Dtnb:NM_001374710:exon3:c.T86C:p.V29A,Dtnb:NM_007886:exon3:c.T86C:p.V29A"	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.629595709	2	0.9999342	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	4973973	12A2p6	cell line	sgMsh2	4973973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	138	0	0	NA	exonic	Atad2b	nonsynonymous SNV	Atad2b:NM_001362349:exon16:c.T1822G:p.C608G	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.878007622	1	0.9953693	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	5091439	12A2p6	cell line	sgMsh2	5091439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	133	0	0	NA	exonic	Klhl29	nonsynonymous SNV	Klhl29:NM_001164493:exon9:c.A1544G:p.Y515C	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	1	1	0.9999771	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	11208443	12A2p6	cell line	sgMsh2	11208443	A	G	SNV	Mutect2;Vardict	2	0.03	167	0	0	NA	exonic	Msgn1	nonsynonymous SNV	Msgn1:NM_019544:exon1:c.T506C:p.I169T	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.12848892	3	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	13390999	12A2p6	cell line	sgMsh2	13390999	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	109	0	0	NA	exonic	Nbas	frameshift deletion	Nbas:NM_027706:exon29:c.3329delC:p.T1110Sfs*30	12qA1.1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.753801666	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC	chr12	21271470	12A2p6	cell line	sgMsh2	21271470	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	162	0	0	NA	exonic	Itgb1bp1	synonymous SNV	"Itgb1bp1:NM_001355609:exon6:c.A480C:p.T160T,Itgb1bp1:NM_008403:exon6:c.A480C:p.T160T"	12qA1.3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.449711221	2	0.9999147	CTG	synonymous	NA	NA	NA	NA
SSC	chr12	21290291	12A2p6	cell line	sgMsh2	21290291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	258	0	0	NA	exonic	Cpsf3	nonsynonymous SNV	"Cpsf3:NM_001364373:exon2:c.T94C:p.F32L,Cpsf3:NM_018813:exon2:c.T94C:p.F32L"	12qA1.3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.895139478	1	0.9999651	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	24096961	12A2p6	cell line	sgMsh2	24096961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	145	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	"9030624G23Rik:NM_001256489:exon1:c.A8G:p.D3G,9030624G23Rik:NM_001382819:exon1:c.A8G:p.D3G"	12qA1.3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.719537954	2	0.89626	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	28737836	12A2p6	cell line	sgMsh2	28737836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	130	0	0	NA	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon3:c.A1247G:p.K416R,Trappc12:NM_001161411:exon3:c.A1247G:p.K416R,Trappc12:NM_001377005:exon3:c.A1247G:p.K416R,Trappc12:NM_001377006:exon3:c.A1247G:p.K416R,Trappc12:NM_001377007:exon3:c.A1247G:p.K416R,Trappc12:NM_178811:exon3:c.A1247G:p.K416R"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.967949866	1	0.9998855	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	28863069	12A2p6	cell line	sgMsh2	28863069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	194	0	0	NA	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.G468T:p.W156C,Eipr1:NM_201357:exon7:c.G768T:p.W256C,Eipr1:NM_001379229:exon8:c.G468T:p.W156C"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.595331997	2	0.9999896	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	29827788	12A2p6	cell line	sgMsh2	29827788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	96	0	0	NA	exonic	Myt1l	nonsynonymous SNV	"Myt1l:NM_001361658:exon9:c.A1374C:p.R458S,Myt1l:NM_001361660:exon9:c.A1374C:p.R458S,Myt1l:NM_001093775:exon10:c.A1437C:p.R479S,Myt1l:NM_001093776:exon10:c.A1437C:p.R479S,Myt1l:NM_001093778:exon10:c.A1434C:p.R478S,Myt1l:NM_001361655:exon10:c.A1437C:p.R479S,Myt1l:NM_001361656:exon10:c.A1437C:p.R479S,Myt1l:NM_001361657:exon10:c.A1437C:p.R479S,Myt1l:NM_001361659:exon10:c.A1437C:p.R479S,Myt1l:NM_008666:exon10:c.A1437C:p.R479S"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.80091427	1	0.8442044	GAA	nonsynonymous	AAATCC	13	AAATCCAAATCCA	NA
SSC	chr12	29851625	12A2p6	cell line	sgMsh2	29851625	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	92	0	0	NA	exonic	Myt1l	nonsynonymous SNV	"Myt1l:NM_001361660:exon14:c.C2174T:p.P725L,Myt1l:NM_001361658:exon15:c.C2309T:p.P770L,Myt1l:NM_001361659:exon15:c.C2237T:p.P746L,Myt1l:NM_001093775:exon16:c.C2378T:p.P793L,Myt1l:NM_001093776:exon16:c.C2372T:p.P791L,Myt1l:NM_001093778:exon16:c.C2369T:p.P790L,Myt1l:NM_001361655:exon16:c.C2378T:p.P793L,Myt1l:NM_001361656:exon16:c.C2372T:p.P791L,Myt1l:NM_001361657:exon16:c.C2372T:p.P791L,Myt1l:NM_008666:exon16:c.C2372T:p.P791L"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.385466761	2	0.8235884	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	30226882	12A2p6	cell line	sgMsh2	30226882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	85	0	0	NA	exonic	Sntg2	synonymous SNV	"Sntg2:NM_001324521:exon13:c.C471T:p.S157S,Sntg2:NM_001324519:exon14:c.C993T:p.S331S,Sntg2:NM_001324520:exon14:c.C975T:p.S325S,Sntg2:NM_172951:exon14:c.C1170T:p.S390S"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.80091427	1	0.8406002	CGC	synonymous	NA	NA	NA	NA
SSC	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.145	273	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.621029781	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr12	31630817	12A2p6	cell line	sgMsh2	31630817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	200	0	0	NA	exonic	Bcap29	nonsynonymous SNV	"Bcap29:NM_007530:exon2:c.A169G:p.I57V,Bcap29:NM_001164090:exon3:c.A169G:p.I57V"	12qA2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.728103882	2	0.9502342	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	32850497	12A2p6	cell line	sgMsh2	32850497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	211	0	0	NA	exonic	Nampt	synonymous SNV	Nampt:NM_021524:exon11:c.A1440G:p.A480A	12qA3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.67242535	2	0.9992089	CAC	synonymous	NA	NA	NA	NA
SSC	chr12	36314357	12A2p6	cell line	sgMsh2	36314357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	172	0	0	NA	exonic	Sostdc1	synonymous SNV	Sostdc1:NM_025312:exon1:c.T64C:p.L22L	12qA3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.561068285	2	0.9999938	TTT	synonymous	NA	NA	NA	NA
SSC	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	171	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.642444602	2	0.9992802	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	38438687	12A2p6	cell line	sgMsh2	38438687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	124	0	0	NA	exonic	Dgkb	nonsynonymous SNV	"Dgkb:NM_001361688:exon22:c.A2051G:p.K684R,Dgkb:NM_178681:exon22:c.A2051G:p.K684R,Dgkb:NM_001361686:exon23:c.A2072G:p.K691R"	12qA3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.591049033	2	0.9990801	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	192	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.591049033	2	0.999991	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	44571709	12A2p6	cell line	sgMsh2	44571709	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	111	0	0	NA	exonic	Nrcam	synonymous SNV	"Nrcam:NM_001146031:exon21:c.A2451C:p.P817P,Nrcam:NM_176930:exon22:c.A2481C:p.P827P"	12qB2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.522521609	2	0.9998243	CAG	synonymous	NA	NA	NA	NA
SSC	chr12	46700491	12A2p6	cell line	sgMsh2	46700491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	106	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon4:c.A930G:p.L310L,Nova1:NM_001364635:exon4:c.A927G:p.L309L,Nova1:NM_001364638:exon5:c.A564G:p.L188L,Nova1:NM_021361:exon5:c.A1002G:p.L334L,Nova1:NM_001364636:exon6:c.A636G:p.L212L,Nova1:NM_001364637:exon7:c.A636G:p.L212L"	12qB3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.629595709	2	0.9877628	CTA	synonymous	ACCTAA	12	ACCTAAACCTAA	NA
SSC	chr12	51371627	12A2p6	cell line	sgMsh2	51371627	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	223	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001167964:exon13:c.A1453C:p.K485Q,G2e3:NM_001015099:exon14:c.A1735C:p.K579Q,G2e3:NM_001167963:exon15:c.A1804C:p.K602Q"	12qB3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.599614961	2	0.9999979	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	51774736	12A2p6	cell line	sgMsh2	51774736	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	238	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon21:c.T3169G:p.L1057V	12qB3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.578200141	2	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	213	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.462560113	2	0.9999991	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
SSC	chr12	53142056	12A2p6	cell line	sgMsh2	53142056	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	232	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T6252C:p.I2084I	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.137054848	3	1	TTA	synonymous	NA	NA	NA	NA
SSC	chr12	54069070	12A2p6	cell line	sgMsh2	54069070	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	103	0	0	NA	exonic	Npas3	nonsynonymous SNV	"Npas3:NM_001370960:exon11:c.A2768C:p.D923A,Npas3:NM_001370963:exon11:c.A2771C:p.D924A,Npas3:NM_001370961:exon12:c.A2867C:p.D956A,Npas3:NM_001370962:exon12:c.A2852C:p.D951A,Npas3:NM_013780:exon12:c.A2861C:p.D954A,Npas3:NM_001370964:exon13:c.A2906C:p.D969A"	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.436862329	2	0.9957913	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	200	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
SSC	chr12	55490467	12A2p6	cell line	sgMsh2	55490467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	144	0	0	NA	exonic	Nfkbia	nonsynonymous SNV	Nfkbia:NM_010907:exon5:c.T836C:p.M279T	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.552502357	2	0.9999635	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	56718313	12A2p6	cell line	sgMsh2	56718313	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.163	100	0	0	NA	exonic	Slc25a21	synonymous SNV	"Slc25a21:NM_172577:exon8:c.C609A:p.T203T,Slc25a21:NM_001167976:exon9:c.C630A:p.T210T"	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.698123134	2	0.8527351	AGG	synonymous	NA	NA	NA	NA
SSC	chr12	59016937	12A2p6	cell line	sgMsh2	59016937	T	-	Deletion	Mutect2;Vardict	2	0.036	234	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon3:c.294delT:p.S100Qfs*72	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr12	61843818	12A2p6	cell line	sgMsh2	61843818	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	82	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.C1892T:p.P631L,Lrfn5:NM_178714:exon4:c.C1892T:p.P631L"	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.775216486	1	0.720477	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	169	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.839460946	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr12	65161578	12A2p6	cell line	sgMsh2	65161578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	257	0	0	NA	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon2:c.A360C:p.K120N	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.75808463	2	0.8338995	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	65226601	12A2p6	cell line	sgMsh2	65226601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	365	0	0	NA	exonic	Wdr20rt	synonymous SNV	Wdr20rt:NM_027614:exon1:c.A837G:p.G279G	12qC1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.728103882	2	0.9986158	GAG	synonymous	NA	NA	NA	NA
SSC	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	169	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	1	1	0.9999981	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	161	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	2	1	1	0.9999967	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	69307199	12A2p6	cell line	sgMsh2	69307199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	99	0	0	NA	exonic	Klhdc2	synonymous SNV	Klhdc2:NM_027117:exon9:c.A783G:p.Q261Q	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.873724658	1	0.9840266	AAG	synonymous	NA	NA	NA	NA
SSC	chr12	69607335	12A2p6	cell line	sgMsh2	69607335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	186	0	0	NA	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon14:c.A2239G:p.S747G	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	69740987	12A2p6	cell line	sgMsh2	69740987	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.195	81	0	0	NA	exonic	Dmac2l	nonsynonymous SNV	"Dmac2l:NM_001361691:exon3:c.G196T:p.G66C,Dmac2l:NM_026536:exon3:c.G196T:p.G66C,Dmac2l:NM_001361690:exon4:c.G196T:p.G66C"	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.835177982	1	0.9299506	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	69818044	12A2p6	cell line	sgMsh2	69818044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	363	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1863C:p.K621N	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.830895018	1	0.9975466	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	70897432	12A2p6	cell line	sgMsh2	70897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	136	0	0	NA	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon13:c.A1583G:p.Q528R	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.616746817	2	0.9986847	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	70983395	12A2p6	cell line	sgMsh2	70983395	G	T	SNV	Mutect2;Vardict	2	0.022	277	0	0	NA	exonic	Psma3	stopgain	Psma3:NM_011184:exon3:c.G181T:p.E61X	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.094225208	3	1	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	71086518	12A2p6	cell line	sgMsh2	71086518	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.191	112	0	0	NA	exonic	Arid4a	nonsynonymous SNV	Arid4a:NM_001081195:exon22:c.A3392G:p.K1131R	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.818046126	1	0.9148579	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	71121913	12A2p6	cell line	sgMsh2	71121913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	232	0	0	NA	exonic	Tomm20l	synonymous SNV	Tomm20l:NM_029227:exon4:c.T312C:p.C104C	12qC2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.792348342	1	0.7953309	GTG	synonymous	NA	NA	NA	NA
SSC	chr12	71975237	12A2p6	cell line	sgMsh2	71975237	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	178	0	0	NA	exonic	Daam1	nonsynonymous SNV	"Daam1:NM_001286452:exon18:c.A2208C:p.E736D,Daam1:NM_026102:exon19:c.A2235C:p.E745D,Daam1:NM_172464:exon19:c.A2235C:p.E745D"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.466843077	2	0.9999959	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	72304133	12A2p6	cell line	sgMsh2	72304133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	exonic	Rtn1	nonsynonymous SNV	Rtn1:NM_153457:exon3:c.T1301A:p.F434Y	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.565351249	2	0.9773258	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	72449680	12A2p6	cell line	sgMsh2	72449680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	245	0	0	NA	exonic	Lrrc9	synonymous SNV	"Lrrc9:NM_001142728:exon3:c.T81C:p.V27V,Lrrc9:NM_001142729:exon3:c.T81C:p.V27V,Lrrc9:NM_030070:exon3:c.T81C:p.V27V"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.351203049	3	0.9870045	TTG	synonymous	NA	NA	NA	NA
SSC	chr12	72477207	12A2p6	cell line	sgMsh2	72477207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	171	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon18:c.A2186G:p.N729S,Lrrc9:NM_030070:exon18:c.A2189G:p.N730S"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.82232909	1	0.9571451	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	73108786	12A2p6	cell line	sgMsh2	73108786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	121	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.C1406T:p.P469L,Six4:NM_001362272:exon3:c.C1382T:p.P461L"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.535370501	2	0.9998824	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	73112526	12A2p6	cell line	sgMsh2	73112526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	45	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon1:c.T659C:p.V220A,Six4:NM_001362272:exon2:c.T635C:p.V212A"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.75808463	1	0.7142237	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	76025625	12A2p6	cell line	sgMsh2	76025625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	192	0	0	NA	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon71:c.A13452G:p.E4484E	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.591049033	2	0.999991	AAC	synonymous	NA	NA	NA	NA
SSC	chr12	76329067	12A2p6	cell line	sgMsh2	76329067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	638	0	0	NA	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.A1251T:p.E417D	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.488257897	2	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	76329094	12A2p6	cell line	sgMsh2	76329094	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	647	0	0	NA	exonic	Akap5	synonymous SNV	Akap5:NM_001101471:exon2:c.T1278C:p.A426A	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.098508172	3	1	CTA	synonymous	NA	NA	NA	NA
SSC	chr12	76329312	12A2p6	cell line	sgMsh2	76329312	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	581	0	0	NA	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.C1496T:p.A499V	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.629595709	2	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	76404802	12A2p6	cell line	sgMsh2	76404802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	114	0	0	NA	exonic	Hspa2	nonsynonymous SNV	"Hspa2:NM_008301:exon1:c.A269G:p.H90R,Hspa2:NM_001002012:exon2:c.A269G:p.H90R"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.826612054	1	0.9381512	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	76406380	12A2p6	cell line	sgMsh2	76406380	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	71	0	0	NA	exonic	Hspa2	nonsynonymous SNV	"Hspa2:NM_008301:exon1:c.G1847C:p.G616A,Hspa2:NM_001002012:exon2:c.G1847C:p.G616A"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.67242535	2	0.8082994	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	76564382	12A2p6	cell line	sgMsh2	76564382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	156	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon6:c.T692C:p.V231A	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.569634213	2	0.9999661	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	78845245	12A2p6	cell line	sgMsh2	78845245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	207	0	0	NA	exonic	Atp6v1d	nonsynonymous SNV	Atp6v1d:NM_023721:exon8:c.G583A:p.E195K	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.706689062	2	0.9899873	TCT	nonsynonymous	CT	9	CTCTCTCTC	NA
SSC	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	159	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	1	0.9949317	TCG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	80205051	12A2p6	cell line	sgMsh2	80205051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	97	0	0	NA	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon3:c.A251G:p.K84R,Actn1:NM_001379075:exon3:c.A251G:p.K84R,Actn1:NM_001379076:exon3:c.A56G:p.K19R,Actn1:NM_134156:exon3:c.A251G:p.K84R"	12qC3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.445428257	2	0.9970603	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	149	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.689557206	2	0.9771971	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	81734093	12A2p6	cell line	sgMsh2	81734093	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	165	0	0	NA	exonic	Map3k9	nonsynonymous SNV	"Map3k9:NM_001174107:exon5:c.G1292T:p.R431M,Map3k9:NM_177395:exon5:c.G1292T:p.R431M"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	2	1	1	0.9999975	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	83555047	12A2p6	cell line	sgMsh2	83555047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	225	0	0	NA	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon5:c.T286C:p.C96R,Zfyve1:NM_001359166:exon8:c.T1531C:p.C511R,Zfyve1:NM_183154:exon8:c.T1531C:p.C511R,Zfyve1:NM_001359167:exon9:c.T1531C:p.C511R"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	1	0.9989607	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	83811287	12A2p6	cell line	sgMsh2	83811287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	215	0	0	NA	exonic	Numb	nonsynonymous SNV	"Numb:NM_001272055:exon3:c.A275G:p.K92R,Numb:NM_001136075:exon4:c.A308G:p.K103R,Numb:NM_010949:exon4:c.A308G:p.K103R,Numb:NM_001272056:exon5:c.A275G:p.K92R"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.359768977	3	0.09313519	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	84126991	12A2p6	cell line	sgMsh2	84126991	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.129	105	0	0	NA	exonic	Dnal1	frameshift deletion	"Dnal1:NM_001346528:exon4:c.65delA:p.I24Lfs*3,Dnal1:NM_028821:exon4:c.182delA:p.I63Lfs*3"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.552502357	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr12	84356325	12A2p6	cell line	sgMsh2	84356325	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	62	0	0	NA	exonic	Fam161b	nonsynonymous SNV	"Fam161b:NM_001358283:exon3:c.G530A:p.R177H,Fam161b:NM_172581:exon3:c.G530A:p.R177H"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.75808463	1	0.6710968	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	84920789	12A2p6	cell line	sgMsh2	84920789	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	123	0	0	NA	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon18:c.T2260C:p.F754L,Arel1:NM_001364189:exon19:c.T2260C:p.F754L,Arel1:NM_178065:exon19:c.T2260C:p.F754L"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.856592802	1	0.9830269	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	85235703	12A2p6	cell line	sgMsh2	85235703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	161	0	0	NA	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon12:c.C4155A:p.R1385R,Mlh3:NM_175337:exon12:c.C4155A:p.R1385R"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	1	0.9951688	TGC	synonymous	NA	NA	NA	NA
SSC	chr12	85268127	12A2p6	cell line	sgMsh2	85268127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	243	0	0	NA	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon2:c.T1284A:p.P428P,Mlh3:NM_175337:exon2:c.T1284A:p.P428P"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.99364765	1	1.96E-08	CAG	synonymous	NA	NA	NA	NA
SSC	chr12	85269125	12A2p6	cell line	sgMsh2	85269125	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	243	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.G286T:p.A96S,Mlh3:NM_175337:exon2:c.G286T:p.A96S"	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.937969118	1	0.9999982	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	85290268	12A2p6	cell line	sgMsh2	85290268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	117	0	0	NA	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon2:c.A698G:p.K233R	12qD1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.732386846	2	0.7219092	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	85608172	12A2p6	cell line	sgMsh2	85608172	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	53	0	0	NA	exonic	Jdp2	nonsynonymous SNV	"Jdp2:NM_001205052:exon2:c.C8A:p.P3H,Jdp2:NM_001205053:exon2:c.C8A:p.P3H,Jdp2:NM_030887:exon2:c.C8A:p.P3H"	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.685274242	2	0.6170106	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	85783013	12A2p6	cell line	sgMsh2	85783013	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	145	0	0	NA	exonic	Flvcr2	frameshift deletion	Flvcr2:NM_145447:exon2:c.795delC:p.P266Rfs*13	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.826612054	NA	NA	ACC	frameshift	NA	NA	NA	-1
SSC	chr12	85876550	12A2p6	cell line	sgMsh2	85876550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	177	0	0	NA	exonic	Ttll5	nonsynonymous SNV	"Ttll5:NM_001364628:exon9:c.T284C:p.L95P,Ttll5:NM_001081423:exon10:c.T800C:p.L267P,Ttll5:NM_001347395:exon10:c.T800C:p.L267P,Ttll5:NM_001364624:exon10:c.T800C:p.L267P,Ttll5:NM_001364625:exon10:c.T800C:p.L267P,Ttll5:NM_001364626:exon10:c.T800C:p.L267P,Ttll5:NM_001364627:exon10:c.T506C:p.L169P"	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.899422442	1	0.9995703	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	86111625	12A2p6	cell line	sgMsh2	86111625	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	101	0	0	NA	exonic	Ift43	nonsynonymous SNV	"Ift43:NM_001199843:exon3:c.A162C:p.K54N,Ift43:NM_029601:exon3:c.A162C:p.K54N"	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.689557206	2	0.8888633	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	87369043	12A2p6	cell line	sgMsh2	87369043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	231	0	0	NA	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon2:c.T209C:p.V70A	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.740952774	2	0.9330075	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	87443626	12A2p6	cell line	sgMsh2	87443626	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	38	0	0	NA	exonic	Nrp	nonsynonymous SNV	Nrp:NM_001013372:exon1:c.T293G:p.V98G	12qD2	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.505389753	2	0.09645978	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
SSC	chr12	91299010	12A2p6	cell line	sgMsh2	91299010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	311	0	0	NA	exonic	Cep128	nonsynonymous SNV	Cep128:NM_181815:exon11:c.G827A:p.S276N	12qD3	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.621029781	2	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	98669232	12A2p6	cell line	sgMsh2	98669232	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	178	0	0	NA	exonic	Spata7	frameshift deletion	"Spata7:NM_001289573:exon10:c.809delA:p.N271Mfs*3,Spata7:NM_001289572:exon11:c.1214delA:p.N406Mfs*3,Spata7:NM_001289574:exon12:c.992delA:p.N332Mfs*3,Spata7:NM_178914:exon12:c.1310delA:p.N438Mfs*3"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.398315653	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	191	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.406881581	2	0.9915818	ATG	synonymous	NA	NA	NA	NA
SSC	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	205	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.321222301	3	0.9996435	TGA	synonymous	NA	NA	NA	NA
SSC	chr12	98763954	12A2p6	cell line	sgMsh2	98763954	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	101	0	0	NA	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001364403:exon8:c.G790A:p.G264R,Zc3h14:NM_001364404:exon8:c.G790A:p.G264R,Zc3h14:NM_001364405:exon8:c.G790A:p.G264R,Zc3h14:NM_001008506:exon9:c.G1255A:p.G419R,Zc3h14:NM_001160107:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364400:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364401:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364402:exon9:c.G1255A:p.G419R,Zc3h14:NM_029334:exon9:c.G1255A:p.G419R"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.231280057	3	0.9999514	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	99388707	12A2p6	cell line	sgMsh2	99388707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	171	0	0	NA	exonic	Foxn3	nonsynonymous SNV	Foxn3:NM_183186:exon2:c.T197C:p.L66P	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.719537954	2	0.9428657	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	100850195	12A2p6	cell line	sgMsh2	100850195	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	219	0	0	NA	exonic	Dglucy	synonymous SNV	"Dglucy:NM_001361023:exon7:c.C666T:p.L222L,Dglucy:NM_145448:exon8:c.C1005T:p.L335L,Dglucy:NM_001361020:exon9:c.C1005T:p.L335L,Dglucy:NM_001361017:exon10:c.C1095T:p.L365L"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.732386846	2	0.9548793	TCG	synonymous	NA	NA	NA	NA
SSC	chr12	100853268	12A2p6	cell line	sgMsh2	100853268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	278	0	0	NA	exonic	Dglucy	nonsynonymous SNV	"Dglucy:NM_001361023:exon8:c.A899G:p.D300G,Dglucy:NM_145448:exon9:c.A1238G:p.D413G,Dglucy:NM_001361020:exon10:c.A1238G:p.D413G,Dglucy:NM_001361017:exon11:c.A1328G:p.D443G"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.411164545	2	0.9992589	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	110	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.90798837	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
SSC	chr12	101706587	12A2p6	cell line	sgMsh2	101706587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	131	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon3:c.T94C:p.S32P,Tc2n:NM_028924:exon3:c.T94C:p.S32P"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.835177982	1	0.963922	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	161	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.88657355	1	0.9984792	TTC	synonymous	NA	NA	NA	NA
SSC	chr12	102840181	12A2p6	cell line	sgMsh2	102840181	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	91	0	0	NA	exonic	Btbd7	frameshift deletion	"Btbd7:NM_001377026:exon2:c.1delA:p.M1Wfs*15,Btbd7:NM_172806:exon3:c.1delA:p.M1Wfs*15"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.668142386	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr12	103095083	12A2p6	cell line	sgMsh2	103095083	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	159	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon26:c.C3700A:p.P1234T	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.745235738	2	0.7560394	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr12	103241372	12A2p6	cell line	sgMsh2	103241372	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	63	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon2:c.T61C:p.C21R	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.359768977	2	0.5705809	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	103241383	12A2p6	cell line	sgMsh2	103241383	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	63	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon2:c.T50C:p.L17P	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.364051941	2	0.6184908	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	103558371	12A2p6	cell line	sgMsh2	103558371	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	138	0	0	NA	exonic	Ppp4r4	synonymous SNV	Ppp4r4:NM_028980:exon3:c.T201C:p.A67A	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.676708314	2	0.9814628	CTG	synonymous	NA	NA	NA	NA
SSC	chr12	104218354	12A2p6	cell line	sgMsh2	104218354	G	T	SNV	Mutect2;Vardict	2	0.036	379	0	0	NA	exonic	Serpina3f	synonymous SNV	"Serpina3f:NM_001168295:exon3:c.G756T:p.V252V,Serpina3f:NM_001033335:exon4:c.G756T:p.V252V,Serpina3f:NM_001168294:exon4:c.G756T:p.V252V"	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.154186704	3	1	TGG	synonymous	NA	NA	NA	NA
SSC	chr12	104696727	12A2p6	cell line	sgMsh2	104696727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	115	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.T4594C:p.Y1532H	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.449711221	2	0.999119	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.225	116	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.963666902	NA	NA	TGT	frameshift	T	5	TTTTT	1
SSC	chr12	105666683	12A2p6	cell line	sgMsh2	105666683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	130	0	0	NA	exonic	Atg2b	nonsynonymous SNV	Atg2b:NM_029654:exon6:c.T838C:p.S280P	12qE	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.548219393	2	0.9999058	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	125	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.86515873	1	0.9885853	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	108898193	12A2p6	cell line	sgMsh2	108898193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	104	0	0	NA	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.T263C:p.L88P	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.90798837	1	0.9957371	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	110666605	12A2p6	cell line	sgMsh2	110666605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	116	0	0	NA	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon77:c.A13849G:p.I4617V	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.689557206	2	0.9311026	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	111302031	12A2p6	cell line	sgMsh2	111302031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	114	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon28:c.T3734C:p.L1245P	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.723820918	2	0.7721606	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	111710911	12A2p6	cell line	sgMsh2	111710911	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	217	0	0	NA	exonic	Bag5	synonymous SNV	"Bag5:NM_001324480:exon2:c.A477T:p.V159V,Bag5:NM_001324481:exon2:c.A477T:p.V159V,Bag5:NM_001324482:exon2:c.A477T:p.V159V,Bag5:NM_027404:exon2:c.A477T:p.V159V"	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.582483105	2	0.9999991	GTA	synonymous	NA	NA	NA	NA
SSC	chr12	111772323	12A2p6	cell line	sgMsh2	111772323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	133	0	0	NA	exonic	Klc1	nonsynonymous SNV	"Klc1:NM_001025358:exon2:c.T4C:p.Y2H,Klc1:NM_001025359:exon2:c.T4C:p.Y2H,Klc1:NM_001025360:exon2:c.T4C:p.Y2H,Klc1:NM_001025361:exon2:c.T4C:p.Y2H,Klc1:NM_001025362:exon2:c.T4C:p.Y2H,Klc1:NM_001025363:exon2:c.T4C:p.Y2H,Klc1:NM_001081959:exon2:c.T4C:p.Y2H,Klc1:NM_001361605:exon2:c.T4C:p.Y2H,Klc1:NM_001361609:exon2:c.T4C:p.Y2H,Klc1:NM_001361610:exon2:c.T4C:p.Y2H,Klc1:NM_001361611:exon2:c.T4C:p.Y2H,Klc1:NM_001361612:exon2:c.T4C:p.Y2H,Klc1:NM_001361613:exon2:c.T4C:p.Y2H,Klc1:NM_001361614:exon2:c.T4C:p.Y2H,Klc1:NM_008450:exon2:c.T4C:p.Y2H"	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.749518702	2	0.6264529	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	83	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.77949945	1	0.742724	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	148	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.792348342	1	0.8009047	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	219	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.813763162	1	0.9497644	AGT	synonymous	NA	NA	NA	NA
SSC	chr12	113157677	12A2p6	cell line	sgMsh2	113157677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	106	0	0	NA	exonic	Tedc1	nonsynonymous SNV	Tedc1:NM_134041:exon4:c.T517C:p.W173R	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.75808463	1	0.5469012	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr12	113544680	12A2p6	cell line	sgMsh2	113544680	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.019	486	0	0	NA	exonic	Adam6a	synonymous SNV	Adam6a:NM_174885:exon1:c.C672A:p.T224T	12qF1	chr12-3501831-114435530	5	4	1	0.96	4.11164545	NA	1	0.081376316	3	1	CCC	synonymous	NA	NA	NA	NA
SSC	chr12	116142882	12A2p6	cell line	sgMsh2	116142882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	238	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon11:c.A1097G:p.Q366R	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.475409005	2	2.27E-08	CAG	nonsynonymous	TTCC	8	TTCCTTCC	NA
SSC	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	180	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.685274242	2	0.9939468	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
SSC	chr12	116407279	12A2p6	cell line	sgMsh2	116407279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	281	0	0	NA	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon3:c.T47C:p.V16A	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.453994185	2	0.9999999	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
SSC	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	234	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.73666981	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC	chr12	117870089	12A2p6	cell line	sgMsh2	117870089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	205	0	0	NA	exonic	Cdca7l	synonymous SNV	Cdca7l:NM_146040:exon3:c.T243C:p.D81D	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.556785321	2	0.9999997	ATT	synonymous	NA	NA	NA	NA
SSC	chr12	118023945	12A2p6	cell line	sgMsh2	118023945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	175	0	0	NA	exonic	Dnah11	synonymous SNV	Dnah11:NM_010060:exon45:c.T7221C:p.H2407H	12qF2	chr12-116047424-119465464	5	4	1	0.96	4.11164545	NA	1	0.338354157	3	0.9874775	TAT	synonymous	NA	NA	NA	NA
SSC	chr13	3941251	12A2p6	cell line	sgMsh2	3941251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	103	0	0	NA	exonic	Ucn3	nonsynonymous SNV	Ucn3:NM_031250:exon2:c.A400G:p.M134V	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998162	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	6614712	12A2p6	cell line	sgMsh2	6614712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	109	0	0	NA	exonic	Pfkp	nonsynonymous SNV	"Pfkp:NM_001291071:exon8:c.A859G:p.I287V,Pfkp:NM_019703:exon8:c.A859G:p.I287V"	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998788	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	9662244	12A2p6	cell line	sgMsh2	9662244	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	125	0	0	NA	exonic	Dip2c	frameshift deletion	Dip2c:NM_001081426:exon36:c.4402delA:p.S1469Vfs*13	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr13	11790274	12A2p6	cell line	sgMsh2	11790274	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	119	0	0	NA	exonic	Ryr2	synonymous SNV	Ryr2:NM_023868:exon23:c.C2703A:p.G901G	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999394	AGC	synonymous	GCCA	8	GCCAGCCA	NA
SSC	chr13	11799810	12A2p6	cell line	sgMsh2	11799810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	81	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon20:c.A2075G:p.H692R	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.415447509	2	0.9646265	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	12434499	12A2p6	cell line	sgMsh2	12434499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	121	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon41:c.A5877G:p.K1959K	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999473	AAC	synonymous	NA	NA	NA	NA
SSC	chr13	13708070	12A2p6	cell line	sgMsh2	13708070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	74	0	0	NA	exonic	Lyst	synonymous SNV	Lyst:NM_010748:exon34:c.T8619C:p.A2873A	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.830895018	1	0.9154024	CTG	synonymous	NA	NA	NA	NA
SSC	chr13	13775544	12A2p6	cell line	sgMsh2	13775544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	74	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon51:c.A11071G:p.I3691V	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9986261	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	14248417	12A2p6	cell line	sgMsh2	14248417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	91	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon24:c.G4039T:p.G1347C	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9995774	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	14317081	12A2p6	cell line	sgMsh2	14317081	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	45	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.T1325G:p.L442R	13qA1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.569634213	2	0.8734209	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	17772540	12A2p6	cell line	sgMsh2	17772540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	174	0	0	NA	exonic	Cdk13	synonymous SNV	"Cdk13:NM_001081058:exon2:c.T1632C:p.L544L,Cdk13:NM_027118:exon2:c.T1632C:p.L544L"	13qA2	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.355486013	3	0.8942745	GAA	synonymous	NA	NA	NA	NA
SSC	chr13	21787561	12A2p6	cell line	sgMsh2	21787561	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	149	0	0	NA	exonic	H2bc22	nonsynonymous SNV	"H2bc22:NM_001290466:exon1:c.A47C:p.K16T,H2bc22:NM_178202:exon1:c.A47C:p.K16T"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999925	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	22179382	12A2p6	cell line	sgMsh2	22179382	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.079	584	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A201G:p.A67A	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.338354157	3	2.11E-08	CTG	synonymous	NA	NA	NA	NA
SSC	chr13	22179385	12A2p6	cell line	sgMsh2	22179385	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.079	585	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A198G:p.V66V	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.338354157	3	2.05E-08	CTA	synonymous	NA	NA	NA	NA
SSC	chr13	23482748	12A2p6	cell line	sgMsh2	23482748	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	65	0	0	NA	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon4:c.A686T:p.Q229L,Btn2a2:NM_001289615:exon4:c.A686T:p.Q229L,Btn2a2:NM_175938:exon4:c.A686T:p.Q229L"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9974372	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	23934081	12A2p6	cell line	sgMsh2	23934081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	108	0	0	NA	exonic	H2bc1	nonsynonymous SNV	H2bc1:NM_175663:exon1:c.A76G:p.K26E	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998701	TTT	nonsynonymous	T	5	TTTTT	NA
SSC	chr13	24069691	12A2p6	cell line	sgMsh2	24069691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	113	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon27:c.G2444A:p.R815H,Carmil1:NM_001384122:exon27:c.G2444A:p.R815H,Carmil1:NM_026825:exon28:c.G2456A:p.R819H"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999082	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	24073941	12A2p6	cell line	sgMsh2	24073941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	108	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon26:c.A2327C:p.K776T,Carmil1:NM_001384122:exon26:c.A2327C:p.K776T,Carmil1:NM_026825:exon27:c.A2339C:p.K780T"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998701	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	24137141	12A2p6	cell line	sgMsh2	24137141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	168	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon11:c.T870G:p.D290E,Carmil1:NM_001384122:exon11:c.T870G:p.D290E,Carmil1:NM_026825:exon11:c.T870G:p.D290E"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.745235738	2	0.7819985	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	27202423	12A2p6	cell line	sgMsh2	27202423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	106	0	0	NA	exonic	Prl3c1	synonymous SNV	"Prl3c1:NM_001163218:exon4:c.T330C:p.A110A,Prl3c1:NM_013766:exon4:c.T390C:p.A130A"	13qA3.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.479691969	2	0.9998099	CTG	synonymous	NA	NA	NA	NA
SSC	chr13	32806806	12A2p6	cell line	sgMsh2	32806806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	29	0	0	NA	exonic	Wrnip1	synonymous SNV	Wrnip1:NM_030215:exon3:c.T1047C:p.G349G	13qA3.2	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9696926	GTG	synonymous	NA	NA	NA	NA
SSC	chr13	33332229	12A2p6	cell line	sgMsh2	33332229	T	-	Deletion	Strelka2;Vardict	2	0.1822	214	0	0	NA	exonic	Serpinb9f	frameshift deletion	Serpinb9f:NM_183197:exon6:c.678delT:p.L227fs*0	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.780356043	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	15	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.923697	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	38023126	12A2p6	cell line	sgMsh2	38023126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	141	0	0	NA	exonic	Cage1	nonsynonymous SNV	Cage1:NM_027724:exon5:c.A1060G:p.T354A	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.449711221	2	0.9997584	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	76	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	41135198	12A2p6	cell line	sgMsh2	41135198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	0	0	NA	exonic	Sycp2l	nonsynonymous SNV	Sycp2l:NM_001324525:exon8:c.A725G:p.N242S	13qA3.3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	43554991	12A2p6	cell line	sgMsh2	43554991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	55	0	0	NA	exonic	Mcur1	nonsynonymous SNV	Mcur1:NM_001081059:exon2:c.A383G:p.H128R	13qA4	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	44902585	12A2p6	cell line	sgMsh2	44902585	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.409	40	0	0	NA	exonic	Jarid2	frameshift deletion	"Jarid2:NM_001360281:exon6:c.750delG:p.R253Gfs*1,Jarid2:NM_001205043:exon7:c.1266delG:p.R425Gfs*1,Jarid2:NM_001205044:exon8:c.1266delG:p.R425Gfs*1,Jarid2:NM_021878:exon8:c.1266delG:p.R425Gfs*1"	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr13	44923269	12A2p6	cell line	sgMsh2	44923269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	64	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon9:c.A691G:p.M231V	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.475409005	2	0.9922642	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	45520960	12A2p6	cell line	sgMsh2	45520960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	54	0	0	NA	exonic	Gmpr	nonsynonymous SNV	Gmpr:NM_025508:exon4:c.T400C:p.Y134H	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.809480198	1	0.8509037	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	46778973	12A2p6	cell line	sgMsh2	46778973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	194	0	0	NA	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon26:c.A3243T:p.V1081V	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999997	TTA	synonymous	TC	9	TCTCTCTCT	NA
SSC	chr13	48826109	12A2p6	cell line	sgMsh2	48826109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	83	0	0	NA	exonic	Phf2	nonsynonymous SNV	Phf2:NM_011078:exon5:c.A545G:p.Y182C	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9992638	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	48889928	12A2p6	cell line	sgMsh2	48889928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	37	0	0	NA	exonic	Fam120a	nonsynonymous SNV	Fam120a:NM_001033268:exon14:c.C2489T:p.A830V	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.95081801	1	0.9679846	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	49057244	12A2p6	cell line	sgMsh2	49057244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	59	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon23:c.T5134C:p.Y1712H,Wnk2:NM_001290313:exon23:c.T5134C:p.Y1712H,Wnk2:NM_029361:exon23:c.T5134C:p.Y1712H"	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9961186	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	49446385	12A2p6	cell line	sgMsh2	49446385	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	61	0	0	NA	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon9:c.T866G:p.F289C,Ippk:NM_199056:exon9:c.T719G:p.F240C"	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	TTC	nonsynonymous	CTT	10	CTTCTTCTTC	NA
SSC	chr13	49464769	12A2p6	cell line	sgMsh2	49464769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	80	0	0	NA	exonic	Cenpp	nonsynonymous SNV	Cenpp:NM_025495:exon7:c.T659C:p.V220A	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990936	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	49715706	12A2p6	cell line	sgMsh2	49715706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	121	0	0	NA	exonic	Iars	synonymous SNV	Iars:NM_172015:exon19:c.T1893C:p.P631P	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999473	CTG	synonymous	NA	NA	NA	NA
SSC	chr13	49732431	12A2p6	cell line	sgMsh2	49732431	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	66	0	0	NA	exonic	Iars	synonymous SNV	Iars:NM_172015:exon33:c.C3645A:p.A1215A	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9976086	CCA	synonymous	NA	NA	NA	NA
SSC	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	86	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.75808463	1	0.6051071	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	50703043	12A2p6	cell line	sgMsh2	50703043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	186	0	0	NA	exonic	Gm8765	nonsynonymous SNV	Gm8765:NM_001244649:exon4:c.T2716C:p.Y906H	13qA5	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999994	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	53344835	12A2p6	cell line	sgMsh2	53344835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	27	0	0	NA	exonic	Sptlc1	nonsynonymous SNV	Sptlc1:NM_009269:exon9:c.A854G:p.H285R	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9653363	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.473	53	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC	chr13	55828462	12A2p6	cell line	sgMsh2	55828462	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	26	0	0	NA	exonic	Pitx1	nonsynonymous SNV	Pitx1:NM_011097:exon2:c.A383C:p.N128T	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9629374	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	56104303	12A2p6	cell line	sgMsh2	56104303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	105	0	0	NA	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159514:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159515:exon4:c.A476G:p.K159R,Macroh2a1:NM_012015:exon4:c.A476G:p.K159R"	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.99984	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	56804540	12A2p6	cell line	sgMsh2	56804540	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	66	0	0	NA	exonic	Trpc7	nonsynonymous SNV	"Trpc7:NM_001302372:exon7:c.G1817A:p.G606D,Trpc7:NM_012035:exon7:c.G1817A:p.G606D,Trpc7:NM_001302373:exon8:c.G662A:p.G221D"	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9976086	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	58238650	12A2p6	cell line	sgMsh2	58238650	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	52	0	0	NA	exonic	Gkap1	synonymous SNV	Gkap1:NM_019832:exon9:c.G903A:p.E301E	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.993706	TCT	synonymous	NA	NA	NA	NA
SSC	chr13	58409075	12A2p6	cell line	sgMsh2	58409075	T	C	SNV	Mutect2;MuSe;Vardict	3	0.146	32	0	0	NA	exonic	Rmi1	synonymous SNV	"Rmi1:NM_028904:exon3:c.T1137C:p.S379S,Rmi1:NM_001168248:exon4:c.T1137C:p.S379S"	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.625312745	2	0.5881081	CTG	synonymous	NA	NA	NA	NA
SSC	chr13	58558259	12A2p6	cell line	sgMsh2	58558259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	88	0	0	NA	exonic	Slc28a3	synonymous SNV	Slc28a3:NM_022317:exon17:c.A1935G:p.V645V	13qB1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.531087537	2	0.9981741	GTA	synonymous	NA	NA	NA	NA
SSC	chr13	59782315	12A2p6	cell line	sgMsh2	59782315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	89	0	0	NA	exonic	Tut7	nonsynonymous SNV	"Tut7:NM_001373962:exon26:c.A4111G:p.T1371A,Tut7:NM_001373963:exon26:c.A4111G:p.T1371A,Tut7:NM_001373964:exon26:c.A4111G:p.T1371A,Tut7:NM_153538:exon26:c.A4111G:p.T1371A"	13qB2	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.903705406	1	0.9914085	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	60729528	12A2p6	cell line	sgMsh2	60729528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	79	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon16:c.T1580C:p.V527A,Dapk1:NM_029653:exon16:c.T1580C:p.V527A,Dapk1:NM_134062:exon16:c.T1580C:p.V527A"	13qB2	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	61197629	12A2p6	cell line	sgMsh2	61197629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	105	0	0	NA	exonic	Cts6	nonsynonymous SNV	Cts6:NM_021445:exon6:c.A653C:p.N218T	13qB2	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.99984	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	63033045	12A2p6	cell line	sgMsh2	63033045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	107	0	0	NA	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon3:c.T820C:p.S274P,Aopep:NM_001289926:exon3:c.T820C:p.S274P"	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998607	ATC	nonsynonymous	C	5	CCCCC	NA
SSC	chr13	63543180	12A2p6	cell line	sgMsh2	63543180	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	80	0	0	NA	exonic	Ptch1	nonsynonymous SNV	"Ptch1:NM_001328514:exon7:c.A773G:p.N258S,Ptch1:NM_008957:exon7:c.A929G:p.N310S"	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.329788229	3	0.8546494	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	64794243	12A2p6	cell line	sgMsh2	64794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	137	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon5:c.A672G:p.I224M	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999826	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	144	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TAG	frameshift	NA	NA	NA	-1
SSC	chr13	70592640	12A2p6	cell line	sgMsh2	70592640	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	140	0	0	NA	exonic	Ice1	frameshift deletion	Ice1:NM_144837:exon18:c.6447delG:p.P2151Qfs*3	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
SSC	chr13	73982678	12A2p6	cell line	sgMsh2	73982678	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	104	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.T875C:p.L292P	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.209865236	3	0.9999933	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	73982683	12A2p6	cell line	sgMsh2	73982683	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	106	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.C880A:p.L294I	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.201299308	3	0.9999973	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	77259933	12A2p6	cell line	sgMsh2	77259933	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.301	73	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon7:c.C1320A:p.S440S	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9985275	CCA	synonymous	NA	NA	NA	NA
SSC	chr13	77761927	12A2p6	cell line	sgMsh2	77761927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	67	0	0	NA	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163419:exon3:c.G160A:p.A54T,Fam172a:NM_001163420:exon3:c.G160A:p.A54T,Fam172a:NM_138312:exon4:c.G298A:p.A100T"	13qC1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9977686	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	81479769	12A2p6	cell line	sgMsh2	81479769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	126	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon53:c.C10972T:p.L3658L	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999627	AGT	synonymous	NA	NA	NA	NA
SSC	chr13	81523753	12A2p6	cell line	sgMsh2	81523753	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	78	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon31:c.A6722C:p.E2241A	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9989588	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	110	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.329788229	3	0.9498223	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	81669464	12A2p6	cell line	sgMsh2	81669464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	182	0	0	NA	exonic	Lysmd3	nonsynonymous SNV	Lysmd3:NM_030257:exon3:c.G559A:p.A187T	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.308373409	3	0.9998201	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	84294754	12A2p6	cell line	sgMsh2	84294754	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	91	0	0	NA	exonic	Tmem161b	frameshift deletion	"Tmem161b:NM_001361908:exon11:c.957delA:p.N321Tfs*14,Tmem161b:NM_001361909:exon11:c.792delA:p.N266Tfs*14,Tmem161b:NM_001361911:exon12:c.792delA:p.N266Tfs*14,Tmem161b:NM_175187:exon12:c.1338delA:p.N448Tfs*14"	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr13	86045853	12A2p6	cell line	sgMsh2	86045853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	106	0	0	NA	exonic	Cox7c	nonsynonymous SNV	Cox7c:NM_007749:exon2:c.T92C:p.V31A	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998507	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	92368285	12A2p6	cell line	sgMsh2	92368285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	82	0	0	NA	exonic	Dhfr	nonsynonymous SNV	Dhfr:NM_010049:exon5:c.A470G:p.Y157C	13qC3	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.372617869	2	0.6774651	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	95632131	12A2p6	cell line	sgMsh2	95632131	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	103	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon33:c.A4260G:p.K1420K	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.299807481	3	0.9929435	GTT	synonymous	NA	NA	NA	NA
SSC	chr13	95707884	12A2p6	cell line	sgMsh2	95707884	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.351	158	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1515C:p.K505N	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.999996	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	95707886	12A2p6	cell line	sgMsh2	95707886	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.351	158	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1513C:p.K505Q	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.999996	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	95716096	12A2p6	cell line	sgMsh2	95716096	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	94	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon12:c.A1318T:p.I440F	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.578200141	2	0.9952912	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	95716136	12A2p6	cell line	sgMsh2	95716136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	97	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon12:c.A1278G:p.Q426Q	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.826612054	1	0.9262445	CTT	synonymous	NA	NA	NA	NA
SSC	chr13	96616459	12A2p6	cell line	sgMsh2	96616459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	103	0	0	NA	exonic	Cert1	synonymous SNV	"Cert1:NM_001164222:exon10:c.A1020G:p.S340S,Cert1:NM_023420:exon10:c.A1020G:p.S340S"	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998162	CAC	synonymous	NA	NA	NA	NA
SSC	chr13	96634855	12A2p6	cell line	sgMsh2	96634855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	153	0	0	NA	exonic	Cert1	nonsynonymous SNV	"Cert1:NM_001164222:exon15:c.T1541C:p.L514P,Cert1:NM_023420:exon16:c.T1619C:p.L540P"	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999943	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	97961393	12A2p6	cell line	sgMsh2	97961393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	55	0	0	NA	exonic	Arhgef28	synonymous SNV	Arhgef28:NM_012026:exon22:c.C2712T:p.F904F	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	AGA	synonymous	GAA	10	GAAGAAGAAG	NA
SSC	chr13	98748220	12A2p6	cell line	sgMsh2	98748220	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	66	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon17:c.A1338G:p.S446S	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.355486013	2	0.5063486	ATG	synonymous	GAT	8	GATGATGA	NA
SSC	chr13	99434640	12A2p6	cell line	sgMsh2	99434640	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	130	0	0	NA	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.G1572A:p.Q524Q	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.239845985	3	0.9999957	CCT	synonymous	NA	NA	NA	NA
SSC	chr13	100055207	12A2p6	cell line	sgMsh2	100055207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	113	0	0	NA	exonic	Bdp1	synonymous SNV	Bdp1:NM_001081061:exon21:c.T4263C:p.N1421N	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.432579365	2	0.9959818	CAT	synonymous	NA	NA	NA	NA
SSC	chr13	100061007	12A2p6	cell line	sgMsh2	100061007	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	161	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A2869T:p.I957F	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999967	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	100425786	12A2p6	cell line	sgMsh2	100425786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	223	0	0	NA	exonic	Naip1	nonsynonymous SNV	Naip1:NM_008670:exon11:c.T2870C:p.M957T	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.376900833	2	0.6007472	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	100489157	12A2p6	cell line	sgMsh2	100489157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	148	0	0	NA	exonic	Gtf2h2	synonymous SNV	"Gtf2h2:NM_001360706:exon4:c.T150C:p.H50H,Gtf2h2:NM_022011:exon4:c.T150C:p.H50H"	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.428296401	2	0.9982339	CAT	synonymous	NA	NA	NA	NA
SSC	chr13	100600570	12A2p6	cell line	sgMsh2	100600570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	108	0	0	NA	exonic	Marveld2	nonsynonymous SNV	"Marveld2:NM_178410:exon4:c.A554G:p.Q185R,Marveld2:NM_001038602:exon5:c.A1385G:p.Q462R"	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.419730473	2	0.9866814	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr13	100803340	12A2p6	cell line	sgMsh2	100803340	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	73	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2237C:p.K746T	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9985275	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr13	100803403	12A2p6	cell line	sgMsh2	100803403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	67	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2174C:p.E725A	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9977686	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	100811369	12A2p6	cell line	sgMsh2	100811369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	69	0	0	NA	exonic	Slc30a5	frameshift deletion	Slc30a5:NM_022885:exon12:c.1500delT:p.F500Lfs*9	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.603897925	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr13	103833663	12A2p6	cell line	sgMsh2	103833663	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	129	0	0	NA	exonic	Erbin	synonymous SNV	"Erbin:NM_001005868:exon21:c.T3444C:p.T1148T,Erbin:NM_001289473:exon21:c.T3444C:p.T1148T,Erbin:NM_001289474:exon21:c.T3444C:p.T1148T,Erbin:NM_001289475:exon21:c.T3444C:p.T1148T"	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.492540861	2	0.9999835	TAG	synonymous	NA	NA	NA	NA
SSC	chr13	104205535	12A2p6	cell line	sgMsh2	104205535	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	125	0	0	NA	exonic	Ppwd1	nonsynonymous SNV	Ppwd1:NM_172807:exon11:c.A1910G:p.D637G	13qD1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	0.265543769	3	0.9999214	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr13	110061816	12A2p6	cell line	sgMsh2	110061816	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	22	0	0	NA	exonic	Rab3c	stoploss	"Rab3c:NM_001360099:exon5:c.A677C:p.X226S,Rab3c:NM_023852:exon5:c.A683C:p.X228S"	13qD2.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9516513	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chr13	110399390	12A2p6	cell line	sgMsh2	110399390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	204	0	0	NA	exonic	Plk2	nonsynonymous SNV	Plk2:NM_152804:exon12:c.T1627C:p.Y543H	13qD2.1	chr13-3556297-119495179	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	12211681	12A2p6	cell line	sgMsh2	12211681	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	0	0	NA	exonic	Ptprg	nonsynonymous SNV	"Ptprg:NM_001347593:exon7:c.G637T:p.V213F,Ptprg:NM_008981:exon20:c.G2962T:p.V988F"	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997574	CGT	nonsynonymous	CCGT	9	CCGTCCGTC	NA
SSC	chr14	12489489	12A2p6	cell line	sgMsh2	12489489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	141	0	0	NA	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon15:c.A2439G:p.S813S,Cadps:NM_001359921:exon15:c.A2439G:p.S813S,Cadps:NM_012061:exon15:c.A2439G:p.S813S,Cadps:NM_001042617:exon16:c.A2451G:p.S817S,Cadps:NM_001359919:exon16:c.A2451G:p.S817S"	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	GTG	synonymous	NA	NA	NA	NA
SSC	chr14	13493535	12A2p6	cell line	sgMsh2	13493535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	84	0	0	NA	exonic	Synpr	nonsynonymous SNV	"Synpr:NM_001163032:exon2:c.T52C:p.C18R,Synpr:NM_028052:exon3:c.T112C:p.C38R"	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	14355034	12A2p6	cell line	sgMsh2	14355034	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	23	0	0	NA	exonic	Il3ra	synonymous SNV	Il3ra:NM_008369:exon11:c.A1095C:p.P365P	14qA1	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9445089	CAC	synonymous	CCCA	8	CCCACCCA	NA
SSC	chr14	16418484	12A2p6	cell line	sgMsh2	16418484	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	98	0	0	NA	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon28:c.A3703T:p.T1235S	14qA2	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997399	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	20409302	12A2p6	cell line	sgMsh2	20409302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	185	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon17:c.A1942G:p.S648G,Cfap70:NM_001163639:exon17:c.A1978G:p.S660G,Cfap70:NM_029698:exon18:c.A2110G:p.S704G"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	20586018	12A2p6	cell line	sgMsh2	20586018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	125	0	0	NA	exonic	Usp54	synonymous SNV	Usp54:NM_030180:exon9:c.T957C:p.D319D	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9996224	CAT	synonymous	CAT	8	CATCATCA	NA
SSC	chr14	20729830	12A2p6	cell line	sgMsh2	20729830	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	158	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.G341T:p.S114I	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9999778	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	21664671	12A2p6	cell line	sgMsh2	21664671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	61	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon16:c.A2672G:p.Q891R,Kat6b:NM_017479:exon16:c.A2672G:p.Q891R"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	21668379	12A2p6	cell line	sgMsh2	21668379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	115	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon17:c.A2798G:p.N933S,Kat6b:NM_017479:exon17:c.A2798G:p.N933S"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9618421	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	21837886	12A2p6	cell line	sgMsh2	21837886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	229	0	0	NA	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon5:c.T296C:p.I99T	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999991	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	21847322	12A2p6	cell line	sgMsh2	21847322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	exonic	Comtd1	nonsynonymous SNV	Comtd1:NM_026965:exon7:c.A742G:p.S248G	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	0.9908257	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	90	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.783782414	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	98	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997399	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	25651309	12A2p6	cell line	sgMsh2	25651309	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	32	0	0	NA	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon14:c.C1585T:p.P529S,Zmiz1:NM_183208:exon14:c.C1603T:p.P535S"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	2	1	1	0.9752483	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	26422496	12A2p6	cell line	sgMsh2	26422496	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	166	0	0	NA	exonic	Slmap	nonsynonymous SNV	"Slmap:NM_001347494:exon18:c.A2070C:p.Q690H,Slmap:NM_032008:exon20:c.A2172C:p.Q724H,Slmap:NM_001310445:exon21:c.A2235C:p.Q745H"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999977	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	27472387	12A2p6	cell line	sgMsh2	27472387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	173	0	0	NA	exonic	Tasor	synonymous SNV	"Tasor:NM_001114879:exon18:c.T3543C:p.D1181D,Tasor:NM_028945:exon18:c.T3543C:p.D1181D"	14qA3	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999986	ATA	synonymous	NA	NA	NA	NA
SSC	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	53	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.869441694	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC	chr14	30559770	12A2p6	cell line	sgMsh2	30559770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	49	0	0	NA	exonic	Tkt	synonymous SNV	Tkt:NM_009388:exon3:c.T244C:p.L82L	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9922605	TTT	synonymous	NA	NA	NA	NA
SSC	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	67	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	2	1	1	0.9977686	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	31140432	12A2p6	cell line	sgMsh2	31140432	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	100	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon63:c.G6944A:p.G2315D	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.218431165	3	0.999979	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	106	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.749518702	2	0.5292457	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	31163844	12A2p6	cell line	sgMsh2	31163844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	80	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon2:c.T172C:p.W58R	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990936	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	126	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999627	AGC	synonymous	NA	NA	NA	NA
SSC	chr14	32177268	12A2p6	cell line	sgMsh2	32177268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	186	0	0	NA	exonic	Ncoa4	synonymous SNV	"Ncoa4:NM_001033988:exon9:c.T1767C:p.R589R,Ncoa4:NM_001284319:exon9:c.T1482C:p.R494R,Ncoa4:NM_019744:exon9:c.T1767C:p.R589R"	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	GTA	synonymous	NA	NA	NA	NA
SSC	chr14	32661078	12A2p6	cell line	sgMsh2	32661078	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	77	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.G2929T:p.G977W	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	35323401	12A2p6	cell line	sgMsh2	35323401	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	176	0	0	NA	exonic	Grid1	synonymous SNV	Grid1:NM_008166:exon8:c.C1200A:p.T400T	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999988	CCT	synonymous	NA	NA	NA	NA
SSC	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	86	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	37081391	12A2p6	cell line	sgMsh2	37081391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	62	0	0	NA	exonic	Cdhr1	nonsynonymous SNV	Cdhr1:NM_130878:exon15:c.A1727G:p.Q576R	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8200455	CTG	nonsynonymous	G	5	GGGGG	NA
SSC	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	63	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7548571-41174827	4	2	2	0.96	4.11164545	NA	1	0.882290586	1	0.9655121	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	44989291	12A2p6	cell line	sgMsh2	44989291	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	186	0	0	NA	exonic	Ptger2	synonymous SNV	Ptger2:NM_008964:exon1:c.G327T:p.A109A	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	CGT	synonymous	NA	NA	NA	NA
SSC	chr14	47548957	12A2p6	cell line	sgMsh2	47548957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	96	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon6:c.A839G:p.Y280C	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	104	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Strelka2;Vardict	2	0.2778	54	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
SSC	chr14	50034672	12A2p6	cell line	sgMsh2	50034672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	224	0	0	NA	exonic	Olfr725	nonsynonymous SNV	Olfr725:NM_146317:exon1:c.A730G:p.I244V	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999988	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	50127283	12A2p6	cell line	sgMsh2	50127283	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.228	354	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.G705T:p.K235N	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	1.08E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	50281451	12A2p6	cell line	sgMsh2	50281451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	244	0	0	NA	exonic	Olfr732	synonymous SNV	Olfr732:NM_146665:exon1:c.T801C:p.A267A	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
SSC	chr14	50361509	12A2p6	cell line	sgMsh2	50361509	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	202	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.A951T:p.K317N	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9999991	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	50361523	12A2p6	cell line	sgMsh2	50361523	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	209	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.T965G:p.L322R	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	50843777	12A2p6	cell line	sgMsh2	50843777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	83	0	0	NA	exonic	Tep1	nonsynonymous SNV	Tep1:NM_009351:exon27:c.A4003G:p.R1335G	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9992638	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	95	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	CGT	synonymous	NA	NA	NA	NA
SSC	chr14	51049874	12A2p6	cell line	sgMsh2	51049874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	194	0	0	NA	exonic	Rnase11	synonymous SNV	Rnase11:NM_001011877:exon1:c.A222G:p.L74L	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	ATA	synonymous	NA	NA	NA	NA
SSC	chr14	51130482	12A2p6	cell line	sgMsh2	51130482	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	117	0	0	NA	exonic	Rnase6	synonymous SNV	"Rnase6:NM_030098:exon2:c.T330G:p.T110T,Rnase6:NM_001360117:exon3:c.T330G:p.T110T"	14qC1	chr14-44852972-51204411	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	CTG	synonymous	NA	NA	NA	NA
SSC	chr14	51895031	12A2p6	cell line	sgMsh2	51895031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	82	0	0	NA	exonic	Slc39a2	nonsynonymous SNV	Slc39a2:NM_001039676:exon4:c.A430G:p.T144A	14qC1	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9956525	GAC	nonsynonymous	GGGA	8	GGGAGGGA	NA
SSC	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	85	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9991318	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	145	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	1	1	0.99999	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
SSC	chr14	52206853	12A2p6	cell line	sgMsh2	52206853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	57	0	0	NA	exonic	Chd8	synonymous SNV	Chd8:NM_201637:exon30:c.A5394G:p.Q1798Q	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	1	1	0.9955432	GTT	synonymous	GTT	9	GTTGTTGTT	NA
SSC	chr14	52300184	12A2p6	cell line	sgMsh2	52300184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	125	0	0	NA	exonic	Mettl3	synonymous SNV	Mettl3:NM_019721:exon2:c.G318A:p.T106T	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	CCG	synonymous	NA	NA	NA	NA
SSC	chr14	52463354	12A2p6	cell line	sgMsh2	52463354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	197	0	0	NA	exonic	Olfr1508	synonymous SNV	Olfr1508:NM_020513:exon2:c.A654G:p.V218V	14qC2	chr14-51819994-52811780	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	CTA	synonymous	NA	NA	NA	NA
SSC	chr14	54242847	12A2p6	cell line	sgMsh2	54242847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	83	0	0	NA	exonic	Dad1	nonsynonymous SNV	"Dad1:NM_001113358:exon2:c.A233C:p.N78T,Dad1:NM_010015:exon2:c.A233C:p.N78T"	14qC2	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.573917177	2	0.9907739	GTT	nonsynonymous	G	5	GGGGG	NA
SSC	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	84	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9936128	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	54897220	12A2p6	cell line	sgMsh2	54897220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	250	0	0	NA	exonic	Pabpn1	stopgain	Pabpn1:NM_019402:exon6:c.C817T:p.R273X	14qC2	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	7.82E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	55234740	12A2p6	cell line	sgMsh2	55234740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	142	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.G87A:p.A29A	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999877	CGG	synonymous	NA	NA	NA	NA
SSC	chr14	55565805	12A2p6	cell line	sgMsh2	55565805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	115	0	0	NA	exonic	Dcaf11	nonsynonymous SNV	"Dcaf11:NM_001199009:exon11:c.A1075G:p.T359A,Dcaf11:NM_133734:exon11:c.A1075G:p.T359A"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9961101	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	55651657	12A2p6	cell line	sgMsh2	55651657	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	164	0	0	NA	exonic	Tssk4	synonymous SNV	"Tssk4:NM_001253888:exon3:c.T639C:p.A213A,Tssk4:NM_001253889:exon3:c.T639C:p.A213A,Tssk4:NM_027673:exon3:c.T609C:p.A203A"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.197016344	3	1.68E-09	CTT	synonymous	NA	NA	NA	NA
SSC	chr14	55718447	12A2p6	cell line	sgMsh2	55718447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	128	0	0	NA	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.A1352G:p.K451R,Rabggta:NM_001360387:exon14:c.A1352G:p.K451R,Rabggta:NM_001360388:exon14:c.A1352G:p.K451R"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999676	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	61	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9899489	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	74	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9986261	CTT	synonymous	NA	NA	NA	NA
SSC	chr14	55769194	12A2p6	cell line	sgMsh2	55769194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	77	0	0	NA	exonic	Adcy4	nonsynonymous SNV	"Adcy4:NM_001361604:exon26:c.A3181G:p.T1061A,Adcy4:NM_080435:exon26:c.A3181G:p.T1061A"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	56487023	12A2p6	cell line	sgMsh2	56487023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	223	0	0	NA	exonic	Rnf17	nonsynonymous SNV	Rnf17:NM_001033043:exon25:c.G3323A:p.R1108H	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.338354157	3	0.9973613	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	56503935	12A2p6	cell line	sgMsh2	56503935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	248	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon28:c.T3846C:p.H1282H	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	8.83E-09	ATG	synonymous	NA	NA	NA	NA
SSC	chr14	56620490	12A2p6	cell line	sgMsh2	56620490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	92	0	0	NA	exonic	Parp4	nonsynonymous SNV	Parp4:NM_001145978:exon22:c.G2578A:p.V860I	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9990994	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	56771844	12A2p6	cell line	sgMsh2	56771844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	240	0	0	NA	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon2:c.T532G:p.F178V	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	1.46E-08	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	57597081	12A2p6	cell line	sgMsh2	57597081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	58	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.T2041C:p.Y681H,Xpo4:NM_001368697:exon16:c.T1819C:p.Y607H"	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.975494	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	113	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.84374391	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr14	60221659	12A2p6	cell line	sgMsh2	60221659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Nupl1	synonymous SNV	"Nupl1:NM_001362439:exon14:c.T1518C:p.G506G,Nupl1:NM_001362440:exon14:c.T1518C:p.G506G,Nupl1:NM_170591:exon14:c.T1518C:p.G506G"	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9912244	AAC	synonymous	NA	NA	NA	NA
SSC	chr14	62364044	12A2p6	cell line	sgMsh2	62364044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	226	0	0	NA	exonic	Rnaseh2b	nonsynonymous SNV	Rnaseh2b:NM_026001:exon8:c.T622C:p.Y208H	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9999795	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	63973377	12A2p6	cell line	sgMsh2	63973377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	75	0	0	NA	exonic	4930578I06Rik	nonsynonymous SNV	4930578I06Rik:NM_026359:exon3:c.A401G:p.E134G	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9979213	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	64029195	12A2p6	cell line	sgMsh2	64029195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	102	0	0	NA	exonic	Rp1l1	synonymous SNV	Rp1l1:NM_146246:exon4:c.A2229G:p.E743E	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7251736	AAC	synonymous	NA	NA	NA	NA
SSC	chr14	65551437	12A2p6	cell line	sgMsh2	65551437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	73	0	0	NA	exonic	Elp3	nonsynonymous SNV	"Elp3:NM_001253812:exon11:c.A1196G:p.H399R,Elp3:NM_028811:exon11:c.A1139G:p.H380R"	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9980891	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	65582934	12A2p6	cell line	sgMsh2	65582934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	59	0	0	NA	exonic	Elp3	synonymous SNV	"Elp3:NM_001253812:exon4:c.A342G:p.K114K,Elp3:NM_028811:exon4:c.A285G:p.K95K"	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.702406098	2	0.5879543	GTT	synonymous	NA	NA	NA	NA
SSC	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	154	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.676708314	2	0.009972267	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	68571494	12A2p6	cell line	sgMsh2	68571494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	105	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon9:c.A764G:p.Y255C	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9983398	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	100	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9962702	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	70184940	12A2p6	cell line	sgMsh2	70184940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	64	0	0	NA	exonic	Sorbs3	nonsynonymous SNV	"Sorbs3:NM_001271409:exon7:c.C605T:p.S202F,Sorbs3:NM_001271407:exon18:c.C1661T:p.S554F,Sorbs3:NM_001271408:exon18:c.C1661T:p.S554F,Sorbs3:NM_011366:exon18:c.C1820T:p.S607F"	14qD2	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	2	1	1	0.9972535	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9994501	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	138	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999838	CAG	synonymous	NA	NA	NA	NA
SSC	chr14	75724715	12A2p6	cell line	sgMsh2	75724715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	exonic	Cog3	nonsynonymous SNV	Cog3:NM_177381:exon15:c.T1715C:p.I572T	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	76506610	12A2p6	cell line	sgMsh2	76506610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	28	0	0	NA	exonic	Tsc22d1	nonsynonymous SNV	"Tsc22d1:NM_001177751:exon3:c.A260G:p.Q87R,Tsc22d1:NM_001310647:exon3:c.A197G:p.Q66R,Tsc22d1:NM_009366:exon3:c.A368G:p.Q123R,Tsc22d1:NM_207652:exon3:c.A3170G:p.Q1057R,Tsc22d1:NM_001310646:exon5:c.A2924G:p.Q975R"	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9675851	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	79062635	12A2p6	cell line	sgMsh2	79062635	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	86	0	0	NA	exonic	Vwa8	synonymous SNV	"Vwa8:NM_027906:exon25:c.T2907A:p.I969I,Vwa8:NM_173758:exon25:c.T2907A:p.I969I"	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	TTA	synonymous	NA	NA	NA	NA
SSC	chr14	79610248	12A2p6	cell line	sgMsh2	79610248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	exonic	Sugt1	synonymous SNV	Sugt1:NM_026474:exon10:c.T537C:p.A179A	14qD3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	CTT	synonymous	NA	NA	NA	NA
SSC	chr14	86981639	12A2p6	cell line	sgMsh2	86981639	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	73	0	0	NA	exonic	Diaph3	nonsynonymous SNV	Diaph3:NM_019670:exon13:c.A1349C:p.H450P	14qE1	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	99088770	12A2p6	cell line	sgMsh2	99088770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	58	0	0	NA	exonic	Dis3	nonsynonymous SNV	"Dis3:NM_001360051:exon9:c.A811G:p.T271A,Dis3:NM_028315:exon9:c.A1378G:p.T460A,Dis3:NM_001360050:exon10:c.A1096G:p.T366A"	14qE2.2	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9958408	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr14	103051324	12A2p6	cell line	sgMsh2	103051324	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	50	0	0	NA	exonic	Acod1	nonsynonymous SNV	Acod1:NM_008392:exon4:c.A269T:p.H90L	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9927756	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	103123316	12A2p6	cell line	sgMsh2	103123316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	63	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon80:c.T13529C:p.I4510T	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	103140915	12A2p6	cell line	sgMsh2	103140915	A	T	SNV	Mutect2;Vardict	2	0.033	161	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon68:c.T11653A:p.F3885I	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.141337812	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	103276396	12A2p6	cell line	sgMsh2	103276396	A	G	SNV	Mutect2;Vardict	2	0.039	135	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon16:c.T2504C:p.M835T	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.167035596	3	2.81E-09	CAT	nonsynonymous	TTTC	8	TTTCTTTC	NA
SSC	chr14	103285363	12A2p6	cell line	sgMsh2	103285363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	89	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon14:c.T2063C:p.M688T	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.659576458	2	0.9280177	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	104478934	12A2p6	cell line	sgMsh2	104478934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	143	0	0	NA	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T2002C:p.L668L	14qE2.3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9445607	AAG	synonymous	NA	NA	NA	NA
SSC	chr14	110750452	12A2p6	cell line	sgMsh2	110750452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	179	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.G1822T:p.V608F	14qE3	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999991	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	115370033	12A2p6	cell line	sgMsh2	115370033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	108	0	0	NA	exonic	Gpc5	nonsynonymous SNV	Gpc5:NM_175500:exon3:c.A827G:p.N276S	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998701	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	118043133	12A2p6	cell line	sgMsh2	118043133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	84	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.T470C:p.V157A	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9157519	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	112	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999016	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	66	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	119139009	12A2p6	cell line	sgMsh2	119139009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	52	0	0	NA	exonic	Hs6st3	nonsynonymous SNV	Hs6st3:NM_015820:exon1:c.T595C:p.F199L	14qE4	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.09490522	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	121238753	12A2p6	cell line	sgMsh2	121238753	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	160	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon10:c.G981T:p.K327N	14qE5	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.788065378	1	0.7607181	AGC	nonsynonymous	AAGCCA	17	AAGCCAAAGCCAAAGCC	NA
SSC	chr14	121276256	12A2p6	cell line	sgMsh2	121276256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	42	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon22:c.A2462G:p.E821G	14qE5	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	2	1	1	0.9874799	GAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
SSC	chr14	121276490	12A2p6	cell line	sgMsh2	121276490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	80	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon23:c.A2623G:p.S875G	14qE5	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990936	CAG	nonsynonymous	C	5	CCCCC	NA
SSC	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	172	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	0.878007622	1	0.998231	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr14	122891529	12A2p6	cell line	sgMsh2	122891529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	123	0	0	NA	exonic	Ggact	synonymous SNV	Ggact:NM_145466:exon3:c.A273G:p.T91T	14qE5	chr14-53294676-123299668	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999541	CTG	synonymous	NA	NA	NA	NA
SSC	chr14	123507512	12A2p6	cell line	sgMsh2	123507512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	120	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon10:c.A1103G:p.K368R	14qE5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	110	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	139	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	124	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999572	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
SSC	chr15	3991830	12A2p6	cell line	sgMsh2	3991830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	143	0	0	NA	exonic	AW549877	nonsynonymous SNV	AW549877:NM_145930:exon3:c.A242C:p.K81T	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.90798837	1	0.9990459	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	4759828	12A2p6	cell line	sgMsh2	4759828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	81	0	0	NA	exonic	C6	nonsynonymous SNV	C6:NM_016704:exon7:c.A754G:p.T252A	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9991543	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	116	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999254	ATG	synonymous	A	5	AAAAA	NA
SSC	chr15	4938378	12A2p6	cell line	sgMsh2	4938378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	166	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon29:c.A2898T:p.L966L	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999977	TAC	synonymous	NA	NA	NA	NA
SSC	chr15	5034235	12A2p6	cell line	sgMsh2	5034235	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	170	0	0	NA	exonic	C7	nonsynonymous SNV	C7:NM_001243837:exon7:c.G683A:p.R228Q	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999982	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	6581000	12A2p6	cell line	sgMsh2	6581000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	127	0	0	NA	exonic	Fyb	synonymous SNV	"Fyb:NM_001278269:exon1:c.A1053G:p.P351P,Fyb:NM_011815:exon1:c.A1053G:p.P351P"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.638161637	2	0.9944199	CAC	synonymous	NA	NA	NA	NA
SSC	chr15	6790600	12A2p6	cell line	sgMsh2	6790600	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	216	0	0	NA	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon33:c.A4372C:p.R1458R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.702406098	2	0.994335	AAG	synonymous	NA	NA	NA	NA
SSC	chr15	7247153	12A2p6	cell line	sgMsh2	7247153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	43	0	0	NA	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon12:c.T1531C:p.Y511H,Egflam:NM_001289498:exon12:c.T1081C:p.Y361H,Egflam:NM_178748:exon12:c.T1531C:p.Y511H"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9883096	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	8154993	12A2p6	cell line	sgMsh2	8154993	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	118	0	0	NA	exonic	Nup155	stopgain	Nup155:NM_133227:exon33:c.G3871T:p.E1291X	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.852309838	1	0.9777552	TGA	nonsynonymous	ATGA	9	ATGAATGAA	NA
SSC	chr15	8186626	12A2p6	cell line	sgMsh2	8186626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	227	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon12:c.A1499G:p.K500R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.642444602	2	0.9999581	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	8202292	12A2p6	cell line	sgMsh2	8202292	-	A	Insertion	Strelka2;Vardict	2	0.2	50	0	0	NA	exonic	Cplane1	frameshift insertion	Cplane1:NM_001162906:exon19:c.3222dupA:p.N1077Kfs*1	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.856592802	NA	NA	ACA	frameshift	A	9	AAAAAAAAA	1
SSC	chr15	8293184	12A2p6	cell line	sgMsh2	8293184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	171	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon45:c.A7742G:p.H2581R,Nipbl:NM_201232:exon45:c.A7742G:p.H2581R"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.655293494	2	0.9984944	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	8359104	12A2p6	cell line	sgMsh2	8359104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	289	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon9:c.T1031C:p.M344T,Nipbl:NM_201232:exon9:c.T1031C:p.M344T"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	1.46E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	9335781	12A2p6	cell line	sgMsh2	9335781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	242	0	0	NA	exonic	Ugt3a2	synonymous SNV	Ugt3a2:NM_144845:exon1:c.T87C:p.S29S	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.830895018	1	0.9888985	CTA	synonymous	NA	NA	NA	NA
SSC	chr15	10371626	12A2p6	cell line	sgMsh2	10371626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	57	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon2:c.A113G:p.K38R,Agxt2:NM_001310735:exon2:c.A113G:p.K38R,Agxt2:NM_001310736:exon2:c.A110G:p.K37R"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9955432	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	10377393	12A2p6	cell line	sgMsh2	10377393	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	66	0	0	NA	exonic	Agxt2	frameshift deletion	"Agxt2:NM_001031851:exon4:c.378delA:p.K128Nfs*2,Agxt2:NM_001310735:exon4:c.378delA:p.K128Nfs*2,Agxt2:NM_001310736:exon4:c.375delA:p.K127Nfs*2"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.985081722	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr15	11215691	12A2p6	cell line	sgMsh2	11215691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	138	0	0	NA	exonic	Adamts12	nonsynonymous SNV	Adamts12:NM_175501:exon4:c.A797G:p.H266R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999838	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	12149561	12A2p6	cell line	sgMsh2	12149561	A	-	Deletion	Strelka2;Vardict	2	0.1566	83	0	0	NA	exonic	Zfr	frameshift deletion	Zfr:NM_011767:exon7:c.1066delA:p.K358Rfs*4	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.670712164	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
SSC	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.792348342	1	0.8020188	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	12375226	12A2p6	cell line	sgMsh2	12375226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	80	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A4822G:p.T1608A	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.608180889	2	0.971627	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	12842449	12A2p6	cell line	sgMsh2	12842449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	73	0	0	NA	exonic	Drosha	nonsynonymous SNV	"Drosha:NM_001130149:exon7:c.A1205G:p.E402G,Drosha:NM_026799:exon7:c.A1205G:p.E402G"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9985275	GAG	nonsynonymous	GGA	15	GGAGGAGGAGGAGGA	NA
SSC	chr15	23474231	12A2p6	cell line	sgMsh2	23474231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	105	0	0	NA	exonic	Cdh18	nonsynonymous SNV	Cdh18:NM_001081299:exon12:c.T2186C:p.V729A	15qA2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.99984	GTG	nonsynonymous	C	5	CCCCC	NA
SSC	chr15	25964273	12A2p6	cell line	sgMsh2	25964273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	277	0	0	NA	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T85A:p.C29S,Retreg1:NM_001277316:exon2:c.T109A:p.C37S,Retreg1:NM_001277317:exon2:c.T55A:p.C19S,Retreg1:NM_025459:exon3:c.T85A:p.C29S,Retreg1:NM_001034851:exon4:c.T457A:p.C153S"	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.818046126	1	0.9766166	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	26552887	12A2p6	cell line	sgMsh2	26552887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	67	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.A293G:p.H98R	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.753801666	1	0.6357613	GTG	nonsynonymous	GTGA	16	TGAGTGGGTGAGTGAG	NA
SSC	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	111	0	0	NA	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
SSC	chr15	28346829	12A2p6	cell line	sgMsh2	28346829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	57	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon45:c.T7457C:p.M2486T	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.937969118	1	0.9855158	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	28411584	12A2p6	cell line	sgMsh2	28411584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	105	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.T11098C:p.Y3700H	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.676708314	2	0.9353939	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	264	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.95081801	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
SSC	chr15	34839711	12A2p6	cell line	sgMsh2	34839711	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	0	0	NA	exonic	Kcns2	nonsynonymous SNV	"Kcns2:NM_001271704:exon2:c.A1219G:p.T407A,Kcns2:NM_181317:exon2:c.A1219G:p.T407A"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.792348342	1	0.801036	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	35793877	12A2p6	cell line	sgMsh2	35793877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	108	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon38:c.A6698G:p.H2233R	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.903705406	1	0.9957301	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	36234870	12A2p6	cell line	sgMsh2	36234870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	135	0	0	NA	exonic	Spag1	nonsynonymous SNV	"Spag1:NM_001359980:exon19:c.A2678C:p.Q893P,Spag1:NM_001359984:exon19:c.A2714C:p.Q905P,Spag1:NM_012031:exon19:c.A2678C:p.Q893P,Spag1:NM_001359982:exon20:c.A2714C:p.Q905P,Spag1:NM_001359981:exon21:c.A2714C:p.Q905P,Spag1:NM_001359983:exon21:c.A1979C:p.Q660P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.805197234	1	0.8787347	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	38022377	12A2p6	cell line	sgMsh2	38022377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	219	0	0	NA	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon15:c.T1882C:p.S628P,Ubr5:NM_001112721:exon15:c.T1864C:p.S622P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	38024902	12A2p6	cell line	sgMsh2	38024902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	153	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon14:c.T1629C:p.H543H,Ubr5:NM_001112721:exon14:c.T1611C:p.H537H"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.655293494	2	0.9965303	CAT	synonymous	NA	NA	NA	NA
SSC	chr15	39437851	12A2p6	cell line	sgMsh2	39437851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon4:c.A1553G:p.E518G,Rims2:NM_001256383:exon4:c.A1553G:p.E518G,Rims2:NM_053271:exon6:c.A1673G:p.E558G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.84374391	1	0.9714645	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
SSC	chr15	39511363	12A2p6	cell line	sgMsh2	39511363	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	77	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256382:exon16:c.A3120T:p.S1040S,Rims2:NM_001256383:exon16:c.A3120T:p.S1040S,Rims2:NM_053271:exon18:c.A3240T:p.S1080S"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.82232909	1	0.09998911	CAG	synonymous	NA	NA	NA	NA
SSC	chr15	39679291	12A2p6	cell line	sgMsh2	39679291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	126	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon3:c.A328G:p.S110G,Rims2:NM_001256383:exon23:c.A4123G:p.S1375G,Rims2:NM_001256382:exon24:c.A4189G:p.S1397G,Rims2:NM_053271:exon24:c.A4063G:p.S1355G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.462560113	2	0.999843	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	44380131	12A2p6	cell line	sgMsh2	44380131	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	116	0	0	NA	exonic	Nudcd1	nonsynonymous SNV	"Nudcd1:NM_001113554:exon9:c.C1382T:p.A461V,Nudcd1:NM_026149:exon9:c.C1385T:p.A462V"	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.663859422	2	0.9735572	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	44396537	12A2p6	cell line	sgMsh2	44396537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	181	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon7:c.T1141C:p.L381L,Nudcd1:NM_026149:exon7:c.T1144C:p.L382L"	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
SSC	chr15	44405825	12A2p6	cell line	sgMsh2	44405825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	132	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.T438C:p.S146S,Nudcd1:NM_026149:exon3:c.T438C:p.S146S"	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999754	GAC	synonymous	NA	NA	NA	NA
SSC	chr15	44546608	12A2p6	cell line	sgMsh2	44546608	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	193	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.A7510G:p.I2504V	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.655293494	2	0.9994581	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	45114359	12A2p6	cell line	sgMsh2	45114359	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	68	0	0	NA	exonic	Kcnv1	synonymous SNV	Kcnv1:NM_026200:exon1:c.C282T:p.C94C	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.90798837	1	0.9831879	CGC	synonymous	NA	NA	NA	NA
SSC	chr15	47660150	12A2p6	cell line	sgMsh2	47660150	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	175	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon51:c.C8059T:p.P2687S	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.732386846	2	0.8953973	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	106	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.685274242	2	0.9173349	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47704155	12A2p6	cell line	sgMsh2	47704155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	185	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.A6611T:p.D2204V	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.783782414	1	0.6992922	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47704245	12A2p6	cell line	sgMsh2	47704245	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	181	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.T6521C:p.I2174T	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.19273338	3	1.04E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47881537	12A2p6	cell line	sgMsh2	47881537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	153	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4373C:p.L1458P	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.723820918	2	0.8942736	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47881541	12A2p6	cell line	sgMsh2	47881541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	150	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4369C:p.F1457L	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.73666981	2	0.8048386	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	47950099	12A2p6	cell line	sgMsh2	47950099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	124	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon21:c.C3348T:p.D1116D	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.97223283	1	0.9998638	GGT	synonymous	NA	NA	NA	NA
SSC	chr15	50660843	12A2p6	cell line	sgMsh2	50660843	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	239	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon6:c.T3690A:p.D1230E,Trps1:NM_032000:exon6:c.T3678A:p.D1226E,Trps1:NM_001310485:exon8:c.T3123A:p.D1041E"	15qC	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.890856514	1	0.9999058	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	50846765	12A2p6	cell line	sgMsh2	50846765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	174	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon2:c.A188G:p.E63G,Trps1:NM_001310485:exon2:c.A188G:p.E63G,Trps1:NM_032000:exon2:c.A176G:p.E59G"	15qC	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.942252082	1	0.999961	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	54252369	12A2p6	cell line	sgMsh2	54252369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	109	0	0	NA	exonic	Tnfrsf11b	synonymous SNV	Tnfrsf11b:NM_008764:exon5:c.T831C:p.C277C	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.659576458	2	0.9694585	CAC	synonymous	NA	NA	NA	NA
SSC	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	112	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.770933522	1	0.6457477	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	55418760	12A2p6	cell line	sgMsh2	55418760	G	A	SNV	Mutect2;Vardict	2	0.036	154	0	0	NA	exonic	Col14a1	nonsynonymous SNV	"Col14a1:NM_001368422:exon20:c.G2425A:p.V809I,Col14a1:NM_181277:exon20:c.G2416A:p.V806I"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.154186704	3	1.02E-09	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	57259163	12A2p6	cell line	sgMsh2	57259163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	38	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon3:c.T417C:p.D139D,Slc22a22:NM_172378:exon4:c.T417C:p.D139D"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9835398	AAT	synonymous	NA	NA	NA	NA
SSC	chr15	58926473	12A2p6	cell line	sgMsh2	58926473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	196	0	0	NA	exonic	Tatdn1	nonsynonymous SNV	"Tatdn1:NM_001368428:exon3:c.A101G:p.D34G,Tatdn1:NM_001368634:exon3:c.A101G:p.D34G,Tatdn1:NM_175151:exon3:c.A101G:p.D34G"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	60016402	12A2p6	cell line	sgMsh2	60016402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	120	0	0	NA	exonic	4933412E24Rik	nonsynonymous SNV	4933412E24Rik:NM_027668:exon1:c.T188C:p.V63A	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.835177982	1	0.9581719	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	60917930	12A2p6	cell line	sgMsh2	60917930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	109	0	0	NA	exonic	A1bg	nonsynonymous SNV	A1bg:NM_001081067:exon7:c.T1468C:p.Y490H	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.835177982	1	0.9515515	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	65857540	12A2p6	cell line	sgMsh2	65857540	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	127	0	0	NA	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon18:c.A1900C:p.S634R,Efr3a:NM_133766:exon18:c.A2008C:p.S670R"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.77949945	1	0.7009817	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	65923985	12A2p6	cell line	sgMsh2	65923985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	82	0	0	NA	exonic	Hhla1	synonymous SNV	Hhla1:NM_001145096:exon16:c.C1371A:p.A457A	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.999211	TGG	synonymous	NA	NA	NA	NA
SSC	chr15	66002297	12A2p6	cell line	sgMsh2	66002297	T	-	Deletion	Strelka2;Vardict	2	0.1345	171	0	0	NA	exonic	Kcnq3	frameshift deletion	Kcnq3:NM_152923:exon12:c.1601delA:p.K534Sfs*5	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.576058659	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC	chr15	66469846	12A2p6	cell line	sgMsh2	66469846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	168	0	0	NA	exonic	Lrrc6	nonsynonymous SNV	Lrrc6:NM_019457:exon4:c.T400C:p.F134L	15qD2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	66615299	12A2p6	cell line	sgMsh2	66615299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	122	0	0	NA	exonic	Phf20l1	synonymous SNV	Phf20l1:NM_001081409:exon11:c.A1260G:p.L420L	15qD2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999508	TAC	synonymous	NA	NA	NA	NA
SSC	chr15	73522340	12A2p6	cell line	sgMsh2	73522340	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	33	0	0	NA	exonic	Dennd3	synonymous SNV	Dennd3:NM_001081066:exon2:c.C213T:p.S71S	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.77949945	1	0.785287	GCT	synonymous	NA	NA	NA	NA
SSC	chr15	73542734	12A2p6	cell line	sgMsh2	73542734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	151	0	0	NA	exonic	Dennd3	nonsynonymous SNV	Dennd3:NM_001081066:exon10:c.A1373G:p.H458R	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.655293494	2	0.9961935	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	74838917	12A2p6	cell line	sgMsh2	74838917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	70	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon4:c.A793C:p.I265L	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.946535046	1	0.9936493	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	74853508	12A2p6	cell line	sgMsh2	74853508	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	94	0	0	NA	exonic	Cyp11b2	nonsynonymous SNV	Cyp11b2:NM_009991:exon4:c.T755C:p.V252A	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.376900833	2	0.7213017	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	75618270	12A2p6	cell line	sgMsh2	75618270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	0	0	NA	exonic	Zfp41	nonsynonymous SNV	"Zfp41:NM_001044718:exon2:c.A70G:p.T24A,Zfp41:NM_011759:exon2:c.A70G:p.T24A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.856592802	1	0.9515901	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	75666272	12A2p6	cell line	sgMsh2	75666272	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	234	0	0	NA	exonic	Top1mt	nonsynonymous SNV	"Top1mt:NM_001355589:exon9:c.A1172G:p.D391G,Top1mt:NM_028404:exon9:c.A1175G:p.D392G"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.197016344	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	111	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9998945	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	185	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.90798837	1	0.9998102	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	109	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.753801666	2	0.5011485	GCG	synonymous	NA	NA	NA	NA
SSC	chr15	76177742	12A2p6	cell line	sgMsh2	76177742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8147C:p.Y2716S,Plec:NM_201385:exon32:c.A8033C:p.Y2678S,Plec:NM_201386:exon32:c.A7994C:p.Y2665S,Plec:NM_201387:exon32:c.A7589C:p.Y2530S,Plec:NM_201388:exon32:c.A7589C:p.Y2530S,Plec:NM_201389:exon32:c.A8489C:p.Y2830S,Plec:NM_201390:exon32:c.A7964C:p.Y2655S,Plec:NM_201391:exon32:c.A8060C:p.Y2687S,Plec:NM_201392:exon32:c.A7589C:p.Y2530S,Plec:NM_201393:exon32:c.A8081C:p.Y2694S,Plec:NM_201394:exon32:c.A8060C:p.Y2687S,Plec:NM_001163540:exon33:c.A8504C:p.Y2835S,Plec:NM_001163549:exon33:c.A8075C:p.Y2692S,Plec:NM_001163542:exon34:c.A8198C:p.Y2733S,Plec:NM_001164203:exon34:c.A7589C:p.Y2530S"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.809480198	1	0.9238456	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76178977	12A2p6	cell line	sgMsh2	76178977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	56	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A7045G:p.T2349A,Plec:NM_201385:exon31:c.A6931G:p.T2311A,Plec:NM_201386:exon31:c.A6892G:p.T2298A,Plec:NM_201387:exon31:c.A6487G:p.T2163A,Plec:NM_201388:exon31:c.A6487G:p.T2163A,Plec:NM_201389:exon31:c.A7387G:p.T2463A,Plec:NM_201390:exon31:c.A6862G:p.T2288A,Plec:NM_201391:exon31:c.A6958G:p.T2320A,Plec:NM_201392:exon31:c.A6487G:p.T2163A,Plec:NM_201393:exon31:c.A6979G:p.T2327A,Plec:NM_201394:exon31:c.A6958G:p.T2320A,Plec:NM_001163540:exon32:c.A7402G:p.T2468A,Plec:NM_001163549:exon32:c.A6973G:p.T2325A,Plec:NM_001163542:exon33:c.A7096G:p.T2366A,Plec:NM_001164203:exon33:c.A6487G:p.T2163A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.976515794	1	0.9925887	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76296687	12A2p6	cell line	sgMsh2	76296687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	215	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon27:c.T3815C:p.F1272S	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.890856514	1	0.9997935	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76298186	12A2p6	cell line	sgMsh2	76298186	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	77	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon21:c.A2968T:p.M990L	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.998884	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76327562	12A2p6	cell line	sgMsh2	76327562	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	55	0	0	NA	exonic	Exosc4	stopgain	Exosc4:NM_175399:exon1:c.A70T:p.K24X	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.994883	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76345552	12A2p6	cell line	sgMsh2	76345552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	238	0	0	NA	exonic	Cyc1	nonsynonymous SNV	Cyc1:NM_025567:exon6:c.A848G:p.D283G	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.753801666	2	0.8493526	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76451423	12A2p6	cell line	sgMsh2	76451423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	47	0	0	NA	exonic	Mroh1	nonsynonymous SNV	Mroh1:NM_175457:exon39:c.T4265C:p.V1422A	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9911183	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76506611	12A2p6	cell line	sgMsh2	76506611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	178	0	0	NA	exonic	Dgat1	synonymous SNV	Dgat1:NM_010046:exon2:c.T270C:p.G90G	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.860875766	1	0.9958507	AAC	synonymous	NA	NA	NA	NA
SSC	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	78	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.65101053	2	0.09231374	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	76726668	12A2p6	cell line	sgMsh2	76726668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	59	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon8:c.T2735C:p.V912A,Arhgap39:NM_001168288:exon9:c.T2828C:p.V943A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.740952774	1	0.6008747	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	252	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.749518702	2	0.09282593	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	78340739	12A2p6	cell line	sgMsh2	78340739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	282	0	0	NA	exonic	Csf2rb	synonymous SNV	"Csf2rb:NM_007780:exon6:c.A618G:p.L206L,Csf2rb:NM_001358854:exon7:c.A618G:p.L206L"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.685274242	2	0.9998515	TAC	synonymous	NA	NA	NA	NA
SSC	chr15	78459882	12A2p6	cell line	sgMsh2	78459882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	122	0	0	NA	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon5:c.T443C:p.I148T,Tmprss6:NM_027902:exon5:c.T479C:p.I160T"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999508	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	78561912	12A2p6	cell line	sgMsh2	78561912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	46	0	0	NA	exonic	Rac2	nonsynonymous SNV	Rac2:NM_009008:exon6:c.T575C:p.L192P	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.84374391	1	0.09719103	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	79317772	12A2p6	cell line	sgMsh2	79317772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	66	0	0	NA	exonic	Pla2g6	synonymous SNV	"Pla2g6:NM_001199023:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199024:exon2:c.G198A:p.Q66Q,Pla2g6:NM_016915:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199025:exon3:c.G198A:p.Q66Q"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.933686154	1	0.9896667	TCT	synonymous	NA	NA	NA	NA
SSC	chr15	80080908	12A2p6	cell line	sgMsh2	80080908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	140	0	0	NA	exonic	Rpl3	synonymous SNV	Rpl3:NM_013762:exon4:c.T489C:p.I163I	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999859	CAA	synonymous	NA	NA	NA	NA
SSC	chr15	80355673	12A2p6	cell line	sgMsh2	80355673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	134	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon7:c.C922A:p.L308I	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.723820918	2	0.8441689	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	81626341	12A2p6	cell line	sgMsh2	81626341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	0	0	NA	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon13:c.A2248G:p.M750V	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.856592802	1	0.9833768	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	81640123	12A2p6	cell line	sgMsh2	81640123	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.139	195	0	0	NA	exonic	Ep300	frameshift insertion	Ep300:NM_177821:exon25:c.4152dupC:p.P1387Sfs*12	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.595331997	NA	NA	TGC	frameshift	C	5	CCCCC	1
SSC	chr15	81640487	12A2p6	cell line	sgMsh2	81640487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	213	0	0	NA	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon26:c.A4217C:p.K1406T	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	81910516	12A2p6	cell line	sgMsh2	81910516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	134	0	0	NA	exonic	Aco2	nonsynonymous SNV	Aco2:NM_080633:exon12:c.T1474C:p.S492P	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.848026874	1	0.9802791	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	82617620	12A2p6	cell line	sgMsh2	82617620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	114	0	0	NA	exonic	Cyp2d34	nonsynonymous SNV	Cyp2d34:NM_145474:exon5:c.T688C:p.F230L	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.835177982	1	0.9546758	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	82790534	12A2p6	cell line	sgMsh2	82790534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	363	0	0	NA	exonic	Cyp2d26	nonsynonymous SNV	Cyp2d26:NM_029562:exon8:c.C1246A:p.L416I	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.809480198	1	0.9675245	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	83160416	12A2p6	cell line	sgMsh2	83160416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	94	0	0	NA	exonic	Cyb5r3	nonsynonymous SNV	Cyb5r3:NM_029787:exon6:c.T469C:p.F157L	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9996568	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	83502185	12A2p6	cell line	sgMsh2	83502185	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	124	0	0	NA	exonic	Ttll1	nonsynonymous SNV	"Ttll1:NM_001357953:exon5:c.G218A:p.R73H,Ttll1:NM_178869:exon5:c.G218A:p.R73H"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.458277149	2	0.9997407	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	83614998	12A2p6	cell line	sgMsh2	83614998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	103	0	0	NA	exonic	Scube1	nonsynonymous SNV	"Scube1:NM_001271473:exon14:c.A1682G:p.D561G,Scube1:NM_022723:exon16:c.A1925G:p.D642G,Scube1:NM_001271472:exon17:c.A2015G:p.D672G"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.740952774	2	0.5912938	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	83852059	12A2p6	cell line	sgMsh2	83852059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon5:c.T652C:p.W218R,Mpped1:NM_001359132:exon5:c.T652C:p.W218R,Mpped1:NM_172610:exon5:c.T652C:p.W218R"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.616746817	2	0.9997022	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	83945248	12A2p6	cell line	sgMsh2	83945248	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	105	0	0	NA	exonic	Efcab6	synonymous SNV	Efcab6:NM_029946:exon17:c.C1890T:p.S630S	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.685274242	2	0.9145315	CGG	synonymous	NA	NA	NA	NA
SSC	chr15	84105512	12A2p6	cell line	sgMsh2	84105512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	23	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T88C:p.F30L,Sult4a1:NM_013873:exon1:c.T88C:p.F30L"	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9547465	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	142	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.856592802	1	0.9885876	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	85816920	12A2p6	cell line	sgMsh2	85816920	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	213	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.G4814A:p.R1605H	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.124205956	3	1	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	85926240	12A2p6	cell line	sgMsh2	85926240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon18:c.T6446A:p.L2149Q	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.835177982	1	0.9352245	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	89424843	12A2p6	cell line	sgMsh2	89424843	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	111	0	0	NA	exonic	Cpt1b	nonsynonymous SNV	Cpt1b:NM_009948:exon3:c.G155T:p.R52M	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.920837262	1	0.9979793	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	89503434	12A2p6	cell line	sgMsh2	89503434	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	102	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon5:c.C805T:p.R269W	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.633878673	2	0.9824252	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	89814244	12A2p6	cell line	sgMsh2	89814244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	139	0	0	NA	exonic	Syt10	nonsynonymous SNV	Syt10:NM_018803:exon3:c.T896C:p.L299P	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999849	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	90956316	12A2p6	cell line	sgMsh2	90956316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	80	0	0	NA	exonic	Kif21a	stopgain	"Kif21a:NM_016705:exon25:c.T3596A:p.L1199X,Kif21a:NM_001109041:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109042:exon26:c.T3617A:p.L1206X,Kif21a:NM_001358050:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109040:exon27:c.T3656A:p.L1219X"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9990936	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	91188906	12A2p6	cell line	sgMsh2	91188906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	144	0	0	NA	exonic	Abcd2	nonsynonymous SNV	"Abcd2:NM_001358967:exon2:c.A1049G:p.Y350C,Abcd2:NM_011994:exon2:c.A1049G:p.Y350C"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.67242535	2	0.9880189	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	91272378	12A2p6	cell line	sgMsh2	91272378	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	66	0	0	NA	exonic	Slc2a13	nonsynonymous SNV	Slc2a13:NM_001033633:exon10:c.G1690A:p.A564T	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.766650558	1	0.7017196	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	91731646	12A2p6	cell line	sgMsh2	91731646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	144	0	0	NA	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon20:c.T2682C:p.D894D	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.565351249	2	0.999932	ATA	synonymous	NA	NA	NA	NA
SSC	chr15	91796139	12A2p6	cell line	sgMsh2	91796139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	220	0	0	NA	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon42:c.T6252C:p.D2084D	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
SSC	chr15	92243027	12A2p6	cell line	sgMsh2	92243027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	156	0	0	NA	exonic	Cntn1	synonymous SNV	"Cntn1:NM_001159647:exon7:c.C633T:p.C211C,Cntn1:NM_001159648:exon7:c.C633T:p.C211C,Cntn1:NM_007727:exon7:c.C633T:p.C211C,Cntn1:NM_001358051:exon9:c.C633T:p.C211C"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999954	GCT	synonymous	NA	NA	NA	NA
SSC	chr15	92250886	12A2p6	cell line	sgMsh2	92250886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	133	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon10:c.A1013G:p.N338S,Cntn1:NM_001159648:exon10:c.A1013G:p.N338S,Cntn1:NM_007727:exon10:c.A1013G:p.N338S,Cntn1:NM_001358051:exon12:c.A1013G:p.N338S"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999771	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	93512576	12A2p6	cell line	sgMsh2	93512576	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.183	123	0	0	NA	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon2:c.T6G:p.P2P,Prickle1:NM_001364846:exon2:c.T6G:p.P2P"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.783782414	1	0.7403947	AAG	synonymous	NA	NA	NA	NA
SSC	chr15	94540303	12A2p6	cell line	sgMsh2	94540303	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.216	189	0	0	NA	exonic	Pus7l	frameshift insertion	Pus7l:NM_172437:exon2:c.659dupT:p.K221Qfs*14	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.925120226	NA	NA	TGA	frameshift	A	5	AAAAA	1
SSC	chr15	96414825	12A2p6	cell line	sgMsh2	96414825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	177	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon15:c.A4334G:p.K1445R	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.878007622	1	0.9984647	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	96997032	12A2p6	cell line	sgMsh2	96997032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	114	0	0	NA	exonic	Slc38a4	nonsynonymous SNV	"Slc38a4:NM_001358058:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358059:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358060:exon16:c.A1602G:p.I534M,Slc38a4:NM_027052:exon16:c.A1602G:p.I534M"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.698123134	2	0.09925822	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	97761222	12A2p6	cell line	sgMsh2	97761222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	46	0	0	NA	exonic	Rapgef3	nonsynonymous SNV	"Rapgef3:NM_001177810:exon5:c.T388C:p.C130R,Rapgef3:NM_001177811:exon5:c.T388C:p.C130R,Rapgef3:NM_001357630:exon5:c.T388C:p.C130R,Rapgef3:NM_144850:exon5:c.T388C:p.C130R"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.990486	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98293799	12A2p6	cell line	sgMsh2	98293799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	113	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon2:c.T5C:p.L2P,Zfp641:NM_173769:exon2:c.T5C:p.L2P"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	2	1	1	0.9999082	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98543573	12A2p6	cell line	sgMsh2	98543573	G	-	Deletion	Strelka2;Vardict	2	0.1949	118	0	0	NA	exonic	Ccnt1	frameshift deletion	Ccnt1:NM_009833:exon9:c.1813delC:p.L605Ffs*3	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.834749686	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
SSC	chr15	98565114	12A2p6	cell line	sgMsh2	98565114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	194	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	"Ccnt1:NM_001368702:exon2:c.T176G:p.I59S,Ccnt1:NM_009833:exon2:c.T176G:p.I59S"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.88657355	1	0.9994575	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98740418	12A2p6	cell line	sgMsh2	98740418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	68	0	0	NA	exonic	Arf3	nonsynonymous SNV	"Arf3:NM_001355510:exon5:c.A461G:p.Y154C,Arf3:NM_007478:exon5:c.A461G:p.Y154C"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9979179	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98806080	12A2p6	cell line	sgMsh2	98806080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	101	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.G1330T:p.G444C	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9997888	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98806898	12A2p6	cell line	sgMsh2	98806898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	33	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.T512C:p.V171A	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9768695	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	98849860	12A2p6	cell line	sgMsh2	98849860	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	59	0	0	NA	exonic	Kmt2d	synonymous SNV	Kmt2d:NM_001033276:exon35:c.A9582G:p.S3194S	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.355486013	2	0.5411228	GTG	synonymous	NA	NA	NA	NA
SSC	chr15	98863015	12A2p6	cell line	sgMsh2	98863015	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	69	0	0	NA	exonic	Kmt2d	frameshift deletion	Kmt2d:NM_001033276:exon11:c.2453delC:p.P818Hfs*4	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.942252082	NA	NA	TGG	frameshift	NA	NA	NA	-1
SSC	chr15	98863224	12A2p6	cell line	sgMsh2	98863224	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	83	0	0	NA	exonic	Kmt2d	synonymous SNV	Kmt2d:NM_001033276:exon11:c.T2244A:p.S748S	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.749518702	1	0.5556559	CAG	synonymous	NA	NA	NA	NA
SSC	chr15	99406630	12A2p6	cell line	sgMsh2	99406630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	207	0	0	NA	exonic	Tmbim6	synonymous SNV	"Tmbim6:NM_001171035:exon8:c.T567C:p.T189T,Tmbim6:NM_026669:exon8:c.T567C:p.T189T,Tmbim6:NM_001171034:exon9:c.T567C:p.T189T,Tmbim6:NM_001171036:exon9:c.T567C:p.T189T"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.848026874	1	0.9947415	CTC	synonymous	NA	NA	NA	NA
SSC	chr15	99520343	12A2p6	cell line	sgMsh2	99520343	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon5:c.G360T:p.K120N,Faim2:NM_028224:exon5:c.G396T:p.K132N"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	1	1	0.9998701	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	99579305	12A2p6	cell line	sgMsh2	99579305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	0	0	NA	exonic	Aqp2	synonymous SNV	Aqp2:NM_009699:exon1:c.C153T:p.G51G	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.856592802	1	0.9690685	GCA	synonymous	NA	NA	NA	NA
SSC	chr15	100005290	12A2p6	cell line	sgMsh2	100005290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	175	0	0	NA	exonic	Larp4	nonsynonymous SNV	"Larp4:NM_001024526:exon13:c.A1418G:p.D473G,Larp4:NM_001080948:exon13:c.A1415G:p.D472G,Larp4:NM_001284521:exon13:c.A1241G:p.D414G,Larp4:NM_001284522:exon13:c.A1412G:p.D471G,Larp4:NM_001284523:exon13:c.A1421G:p.D474G"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.728103882	2	0.9167582	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	100209633	12A2p6	cell line	sgMsh2	100209633	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	92	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon31:c.G3523A:p.E1175K,Dip2b:NM_001159361:exon36:c.G4225A:p.E1409K"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.668142386	2	0.9188504	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	100401578	12A2p6	cell line	sgMsh2	100401578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	219	0	0	NA	exonic	Slc11a2	nonsynonymous SNV	"Slc11a2:NM_001146161:exon12:c.A1171G:p.T391A,Slc11a2:NM_001356952:exon12:c.A379G:p.T127A,Slc11a2:NM_008732:exon12:c.A1171G:p.T391A"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.766650558	2	0.6293452	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	100513159	12A2p6	cell line	sgMsh2	100513159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	99	0	0	NA	exonic	Tfcp2	nonsynonymous SNV	"Tfcp2:NM_001289603:exon12:c.T1067C:p.L356P,Tfcp2:NM_001355497:exon12:c.T1073C:p.L358P,Tfcp2:NM_033476:exon12:c.T1073C:p.L358P"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.830895018	1	0.9367402	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	38	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.646727566	2	9.55E-05	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr15	101040059	12A2p6	cell line	sgMsh2	101040059	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	284	0	0	NA	exonic	Scn8a	nonsynonymous SNV	"Scn8a:NM_011323:exon26:c.G5308T:p.A1770S,Scn8a:NM_001077499:exon27:c.G5308T:p.A1770S"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.11164545	NA	1	0.162752632	3	1	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr15	102501533	12A2p6	cell line	sgMsh2	102501533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	49	0	0	NA	exonic	Map3k12	synonymous SNV	"Map3k12:NM_009582:exon11:c.T1806C:p.H602H,Map3k12:NM_001163643:exon13:c.T1806C:p.H602H,Map3k12:NM_001358844:exon13:c.T1806C:p.H602H"	15qF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
SSC	chr15	103308984	12A2p6	cell line	sgMsh2	103308984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	88	0	0	NA	exonic	Gpr84	nonsynonymous SNV	Gpr84:NM_030720:exon2:c.T665C:p.I222T	15qF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr15	103462798	12A2p6	cell line	sgMsh2	103462798	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	124	0	0	NA	exonic	Nckap1l	nonsynonymous SNV	Nckap1l:NM_153505:exon7:c.A716C:p.N239T	15qF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	187	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	220	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	3979904	12A2p6	cell line	sgMsh2	3979904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	0	0	NA	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon15:c.T4615C:p.F1539L	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	4128508	12A2p6	cell line	sgMsh2	4128508	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	175	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon6:c.G1506T:p.Q502H	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	48	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
SSC	chr16	7224486	12A2p6	cell line	sgMsh2	7224486	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	0	0	NA	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.C275T:p.P92L,Rbfox1:NM_001359728:exon2:c.C275T:p.P92L,Rbfox1:NM_001359729:exon2:c.C275T:p.P92L,Rbfox1:NM_183188:exon2:c.C263T:p.P88L,Rbfox1:NM_001359723:exon5:c.C203T:p.P68L,Rbfox1:NM_001359724:exon5:c.C203T:p.P68L,Rbfox1:NM_001359730:exon5:c.C203T:p.P68L,Rbfox1:NM_001359725:exon6:c.C203T:p.P68L,Rbfox1:NM_021477:exon6:c.C203T:p.P68L"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	8696888	12A2p6	cell line	sgMsh2	8696888	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	260	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon19:c.T2082G:p.D694E	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.999995	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	143	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999886	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	109	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	13827447	12A2p6	cell line	sgMsh2	13827447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	169	0	0	NA	exonic	Ntan1	synonymous SNV	"Ntan1:NM_001346109:exon2:c.T220C:p.L74L,Ntan1:NM_001346111:exon2:c.T220C:p.L74L,Ntan1:NM_001346108:exon3:c.T286C:p.L96L,Ntan1:NM_001346110:exon3:c.T286C:p.L96L,Ntan1:NM_001346106:exon4:c.T310C:p.L104L,Ntan1:NM_001346107:exon4:c.T310C:p.L104L,Ntan1:NM_010946:exon4:c.T310C:p.L104L"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999981	CTT	synonymous	NA	NA	NA	NA
SSC	chr16	13835196	12A2p6	cell line	sgMsh2	13835196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	76	0	0	NA	exonic	Ntan1	nonsynonymous SNV	"Ntan1:NM_001346111:exon7:c.T611G:p.L204W,Ntan1:NM_001346109:exon8:c.T725G:p.L242W,Ntan1:NM_001346110:exon8:c.T677G:p.L226W,Ntan1:NM_001346106:exon9:c.T701G:p.L234W,Ntan1:NM_001346108:exon9:c.T791G:p.L264W,Ntan1:NM_010946:exon10:c.T815G:p.L272W"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9972913	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	97	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.878007622	1	0.9853205	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	131	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	14198085	12A2p6	cell line	sgMsh2	14198085	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	123	0	0	NA	exonic	Myh11	synonymous SNV	Myh11:NM_013607:exon41:c.G5790C:p.G1930G	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999541	GCC	synonymous	G	8	GGGGGGGG	NA
SSC	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	127	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	130	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	CTC	synonymous	NA	NA	NA	NA
SSC	chr16	17323058	12A2p6	cell line	sgMsh2	17323058	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	142	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon23:c.T2547C:p.S849S,Pi4ka:NM_001373955:exon23:c.T2730C:p.S910S"	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.256977841	3	0.9999926	TAG	synonymous	NA	NA	NA	NA
SSC	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	35	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	2	1	1	0.9798067	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.134	36	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.573917177	2	0.7685837	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	19566134	12A2p6	cell line	sgMsh2	19566134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	427	0	0	NA	exonic	Olfr169	nonsynonymous SNV	Olfr169:NM_001011855:exon1:c.A748G:p.M250V	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	20602046	12A2p6	cell line	sgMsh2	20602046	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	70	0	0	NA	exonic	Vwa5b2	nonsynonymous SNV	"Vwa5b2:NM_001384104:exon16:c.C2609T:p.P870L,Vwa5b2:NM_001384105:exon16:c.C2606T:p.P869L,Vwa5b2:NM_001144953:exon19:c.C2606T:p.P869L"	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.9114336	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	21762633	12A2p6	cell line	sgMsh2	21762633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	218	0	0	NA	exonic	Ehhadh	synonymous SNV	Ehhadh:NM_023737:exon7:c.A1608G:p.G536G	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9991012	GTC	synonymous	NA	NA	NA	NA
SSC	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	74	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9986261	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	21983967	12A2p6	cell line	sgMsh2	21983967	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.237	110	0	0	NA	exonic	Liph	frameshift insertion	"Liph:NM_001083894:exon2:c.350_351insT:p.H119Pfs*3,Liph:NM_001289582:exon2:c.350_351insT:p.H119Pfs*3,Liph:NM_153404:exon2:c.350_351insT:p.H119Pfs*3"	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GGT	frameshift	G	5	GGGGG	1
SSC	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	117	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	29454864	12A2p6	cell line	sgMsh2	29454864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	29	0	0	NA	exonic	Atp13a4	nonsynonymous SNV	"Atp13a4:NM_001164612:exon12:c.T1292G:p.V431G,Atp13a4:NM_172613:exon12:c.T1235G:p.V412G,Atp13a4:NM_001164613:exon13:c.T1292G:p.V431G"	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	2	1	1	0.9696926	CAC	nonsynonymous	CCT	8	CCTCCTCC	NA
SSC	chr16	31944509	12A2p6	cell line	sgMsh2	31944509	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.289	88	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T384G:p.N128K	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	31944513	12A2p6	cell line	sgMsh2	31944513	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	89	0	0	NA	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.388delT:p.L130Cfs*38	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr16	31989060	12A2p6	cell line	sgMsh2	31989060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	91	0	0	NA	exonic	Senp5	nonsynonymous SNV	"Senp5:NM_001357087:exon2:c.A1375G:p.S459G,Senp5:NM_001357088:exon2:c.A1375G:p.S459G,Senp5:NM_177103:exon2:c.A1375G:p.S459G"	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	151	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999934	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	213	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	34879075	12A2p6	cell line	sgMsh2	34879075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	52	0	0	NA	exonic	Mylk	synonymous SNV	Mylk:NM_139300:exon8:c.A807G:p.K269K	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.993706	AAG	synonymous	C	5	CCCCC	NA
SSC	chr16	35825306	12A2p6	cell line	sgMsh2	35825306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	44	0	0	NA	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon8:c.A1360G:p.T454A	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9890849	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	102	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	37115952	12A2p6	cell line	sgMsh2	37115952	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	29	0	0	NA	exonic	Stxbp5l	nonsynonymous SNV	"Stxbp5l:NM_001114611:exon25:c.G3153T:p.M1051I,Stxbp5l:NM_001114612:exon26:c.G3324T:p.M1108I,Stxbp5l:NM_001114613:exon26:c.G3225T:p.M1075I,Stxbp5l:NM_172440:exon27:c.G3396T:p.M1132I"	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9696926	CCA	nonsynonymous	NA	NA	NA	NA
SSC	chr16	43988139	12A2p6	cell line	sgMsh2	43988139	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	42	0	0	NA	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon9:c.G960T:p.K320N,Gramd1c:NM_153528:exon9:c.G960T:p.K320N,Gramd1c:NM_001359085:exon13:c.G1491T:p.K497N"	16qB4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9874799	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	161	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999967	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	45748812	12A2p6	cell line	sgMsh2	45748812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	80	0	0	NA	exonic	Phldb2	nonsynonymous SNV	"Phldb2:NM_001357078:exon16:c.A3395G:p.D1132G,Phldb2:NM_153412:exon17:c.A3524G:p.D1175G,Phldb2:NM_001252442:exon18:c.A3683G:p.D1228G"	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.996974	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	218	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	49091132	12A2p6	cell line	sgMsh2	49091132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	111	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon10:c.T926C:p.V309A	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9995907	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	49163139	12A2p6	cell line	sgMsh2	49163139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon32:c.A4616G:p.E1539G	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9945173	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	56188338	12A2p6	cell line	sgMsh2	56188338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	106	0	0	NA	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_025483:exon24:c.T3080C:p.L1027P,Senp7:NM_001360073:exon25:c.T2882C:p.L961P"	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	170	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999982	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	85	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9990189	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	57163596	12A2p6	cell line	sgMsh2	57163596	A	G	SNV	Mutect2;Vardict	2	0.031	166	0	0	NA	exonic	Nit2	synonymous SNV	Nit2:NM_023175:exon4:c.T258C:p.P86P	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.132771884	3	1.00E-09	CAG	synonymous	NA	NA	NA	NA
SSC	chr16	57290871	12A2p6	cell line	sgMsh2	57290871	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	83	0	0	NA	exonic	Tmem30c	nonsynonymous SNV	Tmem30c:NM_027651:exon2:c.C37T:p.P13S	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9988842	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	229	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr16	58926556	12A2p6	cell line	sgMsh2	58926556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	169	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A14G:p.N5S	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999981	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	59201814	12A2p6	cell line	sgMsh2	59201814	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	230	0	0	NA	exonic	Olfr198	nonsynonymous SNV	Olfr198:NM_001011808:exon1:c.C611A:p.A204D	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9999759	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	59345618	12A2p6	cell line	sgMsh2	59345618	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	255	0	0	NA	exonic	Olfr206	nonsynonymous SNV	Olfr206:NM_146991:exon1:c.C82A:p.L28M	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	5.82E-09	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
SSC	chr16	64478578	12A2p6	cell line	sgMsh2	64478578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	163	0	0	NA	exonic	Csnka2ip	synonymous SNV	"Csnka2ip:NM_001368721:exon3:c.G1422A:p.Q474Q,Csnka2ip:NM_173861:exon3:c.G1422A:p.Q474Q"	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9994408	ACT	synonymous	NA	NA	NA	NA
SSC	chr16	64855935	12A2p6	cell line	sgMsh2	64855935	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.149	78	0	0	NA	exonic	Cggbp1	synonymous SNV	"Cggbp1:NM_001357416:exon3:c.C363T:p.A121A,Cggbp1:NM_178647:exon3:c.C363T:p.A121A"	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.638161637	2	0.9323057	CCG	synonymous	NA	NA	NA	NA
SSC	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.1864	118	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.798344491	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
SSC	chr16	65523621	12A2p6	cell line	sgMsh2	65523621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	92	0	0	NA	exonic	Pou1f1	synonymous SNV	"Pou1f1:NM_001362468:exon1:c.T171C:p.Y57Y,Pou1f1:NM_008849:exon2:c.T201C:p.Y67Y"	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9633749	ATG	synonymous	NA	NA	NA	NA
SSC	chr16	66731464	12A2p6	cell line	sgMsh2	66731464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	76	0	0	NA	exonic	Cadm2	synonymous SNV	Cadm2:NM_001347247:exon8:c.C984T:p.S328S	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9988039	GGG	synonymous	AGGG	8	AGGGAGGG	NA
SSC	chr16	69858878	12A2p6	cell line	sgMsh2	69858878	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	219	0	0	NA	exonic	Speer2	frameshift deletion	Speer2:NM_173069:exon4:c.326delA:p.N109Ifs*6	16qC2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr16	70495336	12A2p6	cell line	sgMsh2	70495336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	147	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon12:c.C1555T:p.L519F	16qC2	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.304090445	3	0.9992315	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	74352713	12A2p6	cell line	sgMsh2	74352713	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	92	0	0	NA	exonic	Robo2	frameshift deletion	"Robo2:NM_001358491:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358492:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358493:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358494:exon2:c.226delG:p.D76Mfs*44,Robo2:NM_175549:exon2:c.226delG:p.D76Mfs*44"	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC	chr16	77080387	12A2p6	cell line	sgMsh2	77080387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	90	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon15:c.T1760C:p.M587T	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	77081501	12A2p6	cell line	sgMsh2	77081501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	72	0	0	NA	exonic	Usp25	synonymous SNV	Usp25:NM_013918:exon16:c.T1812C:p.A604A	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9212926	CTA	synonymous	NA	NA	NA	NA
SSC	chr16	81437723	12A2p6	cell line	sgMsh2	81437723	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	69	0	0	NA	exonic	Ncam2	synonymous SNV	"Ncam2:NM_001113208:exon4:c.C465A:p.V155V,Ncam2:NM_010954:exon4:c.C465A:p.V155V"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	TCA	synonymous	CAC	8	CACCACCA	NA
SSC	chr16	84734525	12A2p6	cell line	sgMsh2	84734525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	109	0	0	NA	exonic	Mrpl39	synonymous SNV	"Mrpl39:NM_001384093:exon2:c.G153A:p.R51R,Mrpl39:NM_001384095:exon2:c.G153A:p.R51R,Mrpl39:NM_017404:exon2:c.G153A:p.R51R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.509672717	2	0.999861	GCC	synonymous	CTGC	8	CTGCCTGC	NA
SSC	chr16	87382636	12A2p6	cell line	sgMsh2	87382636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	74	0	0	NA	exonic	Ltn1	nonsynonymous SNV	Ltn1:NM_001081068:exon26:c.G4636A:p.E1546K	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.548219393	2	0.9905117	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	87408812	12A2p6	cell line	sgMsh2	87408812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	173	0	0	NA	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon16:c.A2964G:p.Q988Q	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9999133	CTT	synonymous	NA	NA	NA	NA
SSC	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	109	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	89898281	12A2p6	cell line	sgMsh2	89898281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	75	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.T287C:p.M96T,Tiam1:NM_009384:exon4:c.T287C:p.M96T"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9840462	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	135	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999801	CGC	synonymous	NA	NA	NA	NA
SSC	chr16	91226872	12A2p6	cell line	sgMsh2	91226872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	34	0	0	NA	exonic	Olig2	nonsynonymous SNV	Olig2:NM_016967:exon2:c.A473G:p.Y158C	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9783868	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	91658299	12A2p6	cell line	sgMsh2	91658299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	179	0	0	NA	exonic	Son	synonymous SNV	"Son:NM_019973:exon3:c.T3933C:p.H1311H,Son:NM_178880:exon3:c.T3933C:p.H1311H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999991	ATG	synonymous	NA	NA	NA	NA
SSC	chr16	94686583	12A2p6	cell line	sgMsh2	94686583	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	53	0	0	NA	exonic	Dyrk1a	nonsynonymous SNV	"Dyrk1a:NM_001347731:exon10:c.T1624G:p.C542G,Dyrk1a:NM_001113389:exon11:c.T1651G:p.C551G,Dyrk1a:NM_007890:exon11:c.T1651G:p.C551G"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9941256	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	188	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr16	95409768	12A2p6	cell line	sgMsh2	95409768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	107	0	0	NA	exonic	Erg	nonsynonymous SNV	"Erg:NM_001302153:exon2:c.T203C:p.M68T,Erg:NM_001302154:exon2:c.T203C:p.M68T,Erg:NM_001302179:exon3:c.T224C:p.M75T,Erg:NM_001302183:exon3:c.T224C:p.M75T,Erg:NM_133659:exon3:c.T224C:p.M75T,Erg:NM_001302152:exon4:c.T224C:p.M75T"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	96425060	12A2p6	cell line	sgMsh2	96425060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	101	0	0	NA	exonic	Itgb2l	nonsynonymous SNV	Itgb2l:NM_008405:exon14:c.A1830G:p.I610M	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997888	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chr16	96608180	12A2p6	cell line	sgMsh2	96608180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	151	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon32:c.A5542G:p.T1848A	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9999008	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr16	96648186	12A2p6	cell line	sgMsh2	96648186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	145	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon24:c.A4211G:p.N1404S	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.732386846	2	0.8219995	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr16	97876244	12A2p6	cell line	sgMsh2	97876244	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	64	0	0	NA	exonic	C2cd2	nonsynonymous SNV	C2cd2:NM_174847:exon10:c.G1279T:p.G427W	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9896456	CCA	nonsynonymous	NA	NA	NA	NA
SSC	chr16	97950887	12A2p6	cell line	sgMsh2	97950887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	46	0	0	NA	exonic	Zbtb21	nonsynonymous SNV	"Zbtb21:NM_001081684:exon2:c.A2195G:p.K732R,Zbtb21:NM_175428:exon3:c.A2279G:p.K760R"	16qC4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	3187674	12A2p6	cell line	sgMsh2	3187674	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	99	0	0	NA	exonic	Scaf8	frameshift deletion	Scaf8:NM_134123:exon15:c.1721delA:p.V576fs*0	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.942252082	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Strelka2;Vardict	2	0.2727	88	0	0	NA	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
SSC	chr17	6280693	12A2p6	cell line	sgMsh2	6280693	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	194	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon2:c.G104A:p.G35D,Tmem181a:NM_001357884:exon2:c.G227A:p.G76D"	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9999561	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	7236056	12A2p6	cell line	sgMsh2	7236056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	102	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon3:c.T227C:p.V76A	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	7771665	12A2p6	cell line	sgMsh2	7771665	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	78	0	0	NA	exonic	Fndc1	synonymous SNV	Fndc1:NM_001081416:exon9:c.C3345A:p.A1115A	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.9989588	TGG	synonymous	NA	NA	NA	NA
SSC	chr17	7805009	12A2p6	cell line	sgMsh2	7805009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	91	0	0	NA	exonic	Fndc1	nonsynonymous SNV	Fndc1:NM_001081416:exon2:c.T113C:p.L38P	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	CAG	nonsynonymous	GTGG	8	GTGGGTGG	NA
SSC	chr17	9005207	12A2p6	cell line	sgMsh2	9005207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	92	0	0	NA	exonic	1700010I14Rik	synonymous SNV	"1700010I14Rik:NM_001347544:exon8:c.T1291C:p.L431L,1700010I14Rik:NM_025851:exon8:c.T1291C:p.L431L"	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9123255	GTT	synonymous	NA	NA	NA	NA
SSC	chr17	12662768	12A2p6	cell line	sgMsh2	12662768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	97	0	0	NA	exonic	Slc22a1	nonsynonymous SNV	Slc22a1:NM_009202:exon5:c.T953C:p.L318P	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997213	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	998	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.625312745	2	1	CCT	synonymous	NA	NA	NA	NA
SSC	chr17	13236000	12A2p6	cell line	sgMsh2	13236000	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	1147	0	0	NA	exonic	Smok2b	nonsynonymous SNV	Smok2b:NM_001167913:exon2:c.T1046C:p.L349P	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.501106789	2	1	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	13888230	12A2p6	cell line	sgMsh2	13888230	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	120	0	0	NA	exonic	Afdn	synonymous SNV	Afdn:NM_010806:exon29:c.T4059A:p.P1353P	17qA1	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9995892	CTG	synonymous	NA	NA	NA	NA
SSC	chr17	14670751	12A2p6	cell line	sgMsh2	14670751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon19:c.T3116C:p.V1039A	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	14685891	12A2p6	cell line	sgMsh2	14685891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	81	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon5:c.A746G:p.H249R	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	2	1	1	0.9991543	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	15423082	12A2p6	cell line	sgMsh2	15423082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	124	0	0	NA	exonic	Fam120b	nonsynonymous SNV	"Fam120b:NM_001357822:exon7:c.A2122G:p.N708D,Fam120b:NM_024203:exon7:c.A2122G:p.N708D"	17qA2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	17537014	12A2p6	cell line	sgMsh2	17537014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	139	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon15:c.T2623C:p.L875L	17qA3.2	chr17-3079405-18085536	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8314336	AAC	synonymous	NA	NA	NA	NA
SSC	chr17	18304169	12A2p6	cell line	sgMsh2	18304169	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	366	0	0	NA	exonic	Vmn2r93	frameshift deletion	Vmn2r93:NM_001104542:exon2:c.424delA:p.K144Nfs*37	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
SSC	chr17	18305080	12A2p6	cell line	sgMsh2	18305080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	346	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon3:c.T999C:p.F333F	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1.01E-09	TTA	synonymous	NA	NA	NA	NA
SSC	chr17	18325841	12A2p6	cell line	sgMsh2	18325841	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	974	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon6:c.T1974G:p.A658A	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1	CTT	synonymous	NA	NA	NA	NA
SSC	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	212	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.97223283	1	0.9999993	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.253	569	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	19066034	12A2p6	cell line	sgMsh2	19066034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	595	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A793G:p.M265V	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	1	0.890856514	1	1.83E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	19522553	12A2p6	cell line	sgMsh2	19522553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	461	0	0	NA	exonic	Vmn2r100	synonymous SNV	Vmn2r100:NM_001104562:exon3:c.G1188A:p.E396E	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1.00E-09	AGA	synonymous	NA	NA	NA	NA
SSC	chr17	19531210	12A2p6	cell line	sgMsh2	19531210	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.052	508	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon6:c.G1703T:p.S568I	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	1	0.222714129	3	1	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	19577445	12A2p6	cell line	sgMsh2	19577445	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	177	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon1:c.T215A:p.I72K	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.963666902	1	0.9999906	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20030036	12A2p6	cell line	sgMsh2	20030036	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.235	869	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.T1972C:p.F658L	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20030038	12A2p6	cell line	sgMsh2	20030038	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.235	869	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.C1970A:p.T657N	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	1	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20042714	12A2p6	cell line	sgMsh2	20042714	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	434	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon2:c.C484G:p.Q162E	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.955100974	1	1.01E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20228012	12A2p6	cell line	sgMsh2	20228012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	213	0	0	NA	exonic	Vmn2r105	synonymous SNV	Vmn2r105:NM_001369232:exon3:c.T543C:p.I181I	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	1	0.916554298	1	0.999965	AAA	synonymous	NA	NA	NA	NA
SSC	chr17	20278544	12A2p6	cell line	sgMsh2	20278544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	256	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon3:c.T1104C:p.D368D,Vmn2r106:NM_001385160:exon3:c.T1104C:p.D368D"	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	5.50E-09	AAT	synonymous	CAAT	8	CAATCAAT	NA
SSC	chr17	20502847	12A2p6	cell line	sgMsh2	20502847	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.235	218	0	0	NA	exonic	Vmn1r225	frameshift insertion	Vmn1r225:NM_134194:exon1:c.550dupT:p.W185Lfs*4	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC	chr17	20541372	12A2p6	cell line	sgMsh2	20541372	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	173	0	0	NA	exonic	Vmn2r109	synonymous SNV	Vmn2r109:NM_001104571:exon6:c.C1722A:p.A574A	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	0.9999986	AGG	synonymous	NA	NA	NA	NA
SSC	chr17	20541410	12A2p6	cell line	sgMsh2	20541410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	157	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.T1684C:p.Y562H	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	1	1	0.9999957	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20574197	12A2p6	cell line	sgMsh2	20574197	A	-	Deletion	Strelka2;Vardict	2	0.2257	545	0	0	NA	exonic	Vmn2r110	frameshift deletion	Vmn2r110:NM_001104572:exon6:c.2209delT:p.C737Afs*77	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	2	0.966664977	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr17	20574454	12A2p6	cell line	sgMsh2	20574454	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.199	410	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon6:c.T1952G:p.L651R	17qA3.2	chr17-18105061-20584717	6	3	3	0.96	4.11164545	NA	1	0.852309838	1	0.9999288	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	20960476	12A2p6	cell line	sgMsh2	20960476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	149	0	0	NA	exonic	Ppp2r1a	nonsynonymous SNV	Ppp2r1a:NM_016891:exon10:c.T1139C:p.V380A	17qA3.2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999925	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	22146436	12A2p6	cell line	sgMsh2	22146436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	191	0	0	NA	exonic	Zfp947	nonsynonymous SNV	Zfp947:NM_177596:exon5:c.T256C:p.C86R	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	22602492	12A2p6	cell line	sgMsh2	22602492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	288	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.A445G:p.T149A	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9998492	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	23665855	12A2p6	cell line	sgMsh2	23665855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	35	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon4:c.G613A:p.E205K	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9645406	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	24185323	12A2p6	cell line	sgMsh2	24185323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	75	0	0	NA	exonic	Tbc1d24	synonymous SNV	"Tbc1d24:NM_001163847:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163848:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163849:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163850:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163851:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163853:exon3:c.T846C:p.P282P,Tbc1d24:NM_173186:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163852:exon4:c.T846C:p.P282P"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9971282	CAG	synonymous	NA	NA	NA	NA
SSC	chr17	24887906	12A2p6	cell line	sgMsh2	24887906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	90	0	0	NA	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon2:c.T553C:p.S185P,Spsb3:NM_001163751:exon2:c.T208C:p.S70P,Spsb3:NM_001374602:exon2:c.T115C:p.S39P,Spsb3:NM_027141:exon2:c.T220C:p.S74P"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9448735	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	24897219	12A2p6	cell line	sgMsh2	24897219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	183	0	0	NA	exonic	Nme3	nonsynonymous SNV	Nme3:NM_019730:exon5:c.T398C:p.V133A	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.999235	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	25376911	12A2p6	cell line	sgMsh2	25376911	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	37	0	0	NA	exonic	Cacna1h	frameshift deletion	"Cacna1h:NM_001163691:exon34:c.5918delC:p.P1973Lfs*369,Cacna1h:NM_021415:exon34:c.5971delC:p.L1991Ffs*12"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr17	25750133	12A2p6	cell line	sgMsh2	25750133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	77	0	0	NA	exonic	Msln	nonsynonymous SNV	"Msln:NM_018857:exon12:c.A1277C:p.Q426P,Msln:NM_001356286:exon13:c.A1277C:p.Q426P,Msln:NM_001374653:exon13:c.A1289C:p.Q430P"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	25784350	12A2p6	cell line	sgMsh2	25784350	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	0	0	NA	exonic	Haghl	stopgain	"Haghl:NM_001271436:exon4:c.C163T:p.R55X,Haghl:NM_001271437:exon4:c.C163T:p.R55X,Haghl:NM_001378783:exon4:c.C163T:p.R55X,Haghl:NM_001378784:exon4:c.C163T:p.R55X,Haghl:NM_026897:exon4:c.C307T:p.R103X,Haghl:NM_001271433:exon5:c.C307T:p.R103X,Haghl:NM_001271434:exon5:c.C307T:p.R103X,Haghl:NM_001271435:exon5:c.C307T:p.R103X,Haghl:NM_001378780:exon5:c.C307T:p.R103X,Haghl:NM_001378781:exon5:c.C307T:p.R103X,Haghl:NM_001378782:exon5:c.C307T:p.R103X"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	25878357	12A2p6	cell line	sgMsh2	25878357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	22	0	0	NA	exonic	Wfikkn1	nonsynonymous SNV	Wfikkn1:NM_001100454:exon2:c.T992C:p.M331T	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	1	0.9516513	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	49	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9922605	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	28	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9675851	GAG	synonymous	NA	NA	NA	NA
SSC	chr17	28067090	12A2p6	cell line	sgMsh2	28067090	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	86	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon9:c.T1211G:p.L404R,Tcp11:NM_001085555:exon10:c.T1313G:p.L438R,Tcp11:NM_001357681:exon10:c.T1313G:p.L438R,Tcp11:NM_001374621:exon10:c.T1190G:p.L397R,Tcp11:NM_013687:exon10:c.T1550G:p.L517R"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.312656373	3	0.9565884	GAG	nonsynonymous	C	5	CCCCC	NA
SSC	chr17	28200490	12A2p6	cell line	sgMsh2	28200490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	81	0	0	NA	exonic	Zfp523	nonsynonymous SNV	"Zfp523:NM_001357995:exon7:c.A601G:p.S201G,Zfp523:NM_172617:exon8:c.A601G:p.S201G"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9963831	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	28317212	12A2p6	cell line	sgMsh2	28317212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	62	0	0	NA	exonic	Fance	nonsynonymous SNV	"Fance:NM_001163819:exon4:c.A928G:p.S310G,Fance:NM_001163820:exon4:c.A928G:p.S310G"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9968458	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	28576240	12A2p6	cell line	sgMsh2	28576240	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	176	0	0	NA	exonic	Lhfpl5	frameshift deletion	Lhfpl5:NM_026571:exon1:c.240delG:p.G82Afs*59	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.676708314	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr17	28691801	12A2p6	cell line	sgMsh2	28691801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	28	0	0	NA	exonic	Mapk14	nonsynonymous SNV	"Mapk14:NM_001168508:exon1:c.C62A:p.P21H,Mapk14:NM_011951:exon1:c.C62A:p.P21H"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.766650558	1	0.7684129	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	28858946	12A2p6	cell line	sgMsh2	28858946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	107	0	0	NA	exonic	Pnpla1	nonsynonymous SNV	Pnpla1:NM_001034885:exon1:c.A80G:p.Y27C	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	29526332	12A2p6	cell line	sgMsh2	29526332	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.276	90	0	0	NA	exonic	Tmem217	stopgain	"Tmem217:NM_001162902:exon2:c.T423G:p.Y141X,Tmem217:NM_001162901:exon3:c.T423G:p.Y141X"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	29526335	12A2p6	cell line	sgMsh2	29526335	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.276	90	0	0	NA	exonic	Tmem217	synonymous SNV	"Tmem217:NM_001162902:exon2:c.A420C:p.L140L,Tmem217:NM_001162901:exon3:c.A420C:p.L140L"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	ATA	synonymous	NA	NA	NA	NA
SSC	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	139	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9524346	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	30719001	12A2p6	cell line	sgMsh2	30719001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	134	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon35:c.A4851G:p.E1617E	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999786	AAT	synonymous	NA	NA	NA	NA
SSC	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	132	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.69384017	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr17	30875031	12A2p6	cell line	sgMsh2	30875031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	160	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon93:c.A14098C:p.T4700P	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.561068285	2	0.9999842	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	30986137	12A2p6	cell line	sgMsh2	30986137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	110	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon11:c.A1705G:p.T569A	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	31188437	12A2p6	cell line	sgMsh2	31188437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	134	0	0	NA	exonic	Tmprss3	nonsynonymous SNV	"Tmprss3:NM_080727:exon8:c.T815C:p.V272A,Tmprss3:NM_001163776:exon9:c.T881C:p.V294A"	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999786	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	31218058	12A2p6	cell line	sgMsh2	31218058	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	75	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.A648C:p.K216N	17qA3.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9987181	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	32156258	12A2p6	cell line	sgMsh2	32156258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	119	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon7:c.T1189G:p.S397A	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	32184906	12A2p6	cell line	sgMsh2	32184906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	127	0	0	NA	exonic	Ephx3	nonsynonymous SNV	"Ephx3:NM_001033163:exon7:c.T1265C:p.L422P,Ephx3:NM_001347341:exon7:c.T1244C:p.L415P"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9909185	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	32305325	12A2p6	cell line	sgMsh2	32305325	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	170	0	0	NA	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon12:c.A1654C:p.I552L,Akap8:NM_019774:exon14:c.A1996C:p.I666L"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.9313028	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	32377792	12A2p6	cell line	sgMsh2	32377792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	0	0	NA	exonic	Wiz	nonsynonymous SNV	Wiz:NM_001372227:exon3:c.C967A:p.L323I	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9671054	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	32634724	12A2p6	cell line	sgMsh2	32634724	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	341	0	0	NA	exonic	Cyp4f37	frameshift deletion	Cyp4f37:NM_001100187:exon12:c.1381delT:p.S462Lfs*7	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.912271334	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr17	33433082	12A2p6	cell line	sgMsh2	33433082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	48	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A115G:p.M39V	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9917088	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	33433109	12A2p6	cell line	sgMsh2	33433109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	68	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A142G:p.T48A	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	AAC	nonsynonymous	A	5	AAAAA	NA
SSC	chr17	33538279	12A2p6	cell line	sgMsh2	33538279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	174	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon8:c.C9T:p.H3H,Adamts10:NM_001329143:exon9:c.C9T:p.H3H,Adamts10:NM_001329203:exon10:c.C102T:p.H34H,Adamts10:NM_172619:exon10:c.C1206T:p.H402H"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.65101053	2	0.9989802	ACG	synonymous	NA	NA	NA	NA
SSC	chr17	33819931	12A2p6	cell line	sgMsh2	33819931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	104	0	0	NA	exonic	Kank3	nonsynonymous SNV	Kank3:NM_030697:exon7:c.A1823G:p.N608S	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	50	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9927756	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	34042235	12A2p6	cell line	sgMsh2	34042235	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	59	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_001317722:exon2:c.T158G:p.V53G,Col11a2:NM_009926:exon2:c.T158G:p.V53G"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9204235	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	34063180	12A2p6	cell line	sgMsh2	34063180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	72	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_009926:exon57:c.C4043A:p.P1348H,Col11a2:NM_001317722:exon58:c.C4238A:p.P1413H"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	1	0.9984218	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	34188199	12A2p6	cell line	sgMsh2	34188199	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	61	0	0	NA	exonic	Tap1	nonsynonymous SNV	"Tap1:NM_001161730:exon1:c.T320G:p.L107R,Tap1:NM_013683:exon1:c.T320G:p.L107R"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	CTG	nonsynonymous	TACTG	10	TACTGTACTG	NA
SSC	chr17	34625876	12A2p6	cell line	sgMsh2	34625876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	125	0	0	NA	exonic	Ppt2	synonymous SNV	"Ppt2:NM_019441:exon3:c.T393G:p.S131S,Ppt2:NM_001302393:exon4:c.T393G:p.S131S,Ppt2:NM_001302394:exon4:c.T393G:p.S131S,Ppt2:NM_001302395:exon4:c.T393G:p.S131S,Ppt2:NM_001302396:exon4:c.T393G:p.S131S"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	AAG	synonymous	NA	NA	NA	NA
SSC	chr17	34673291	12A2p6	cell line	sgMsh2	34673291	G	A	SNV	Mutect2;Vardict	2	0.028	193	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon3:c.G2258A:p.R753Q	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.119922992	3	1	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	42	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.578200141	2	0.8299636	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	34839827	12A2p6	cell line	sgMsh2	34839827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	87	0	0	NA	exonic	Skiv2l	nonsynonymous SNV	Skiv2l:NM_021337:exon27:c.T3398C:p.V1133A	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	1	0.9994422	TAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr17	34857117	12A2p6	cell line	sgMsh2	34857118	TC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	192	0	0	NA	exonic	Cfb	frameshift deletion	"Cfb:NM_001142706:exon16:c.1968_1969del:p.E656Dfs*106,Cfb:NM_008198:exon16:c.1972_1973del:p.D658Cfs*6"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ATC	frameshift	TC	8	TCTCTCTC	-2
SSC	chr17	34978004	12A2p6	cell line	sgMsh2	34978004	G	-	Deletion	Mutect2;Vardict	2	0.062	97	0	0	NA	exonic	Hspa1l	frameshift deletion	Hspa1l:NM_013558:exon2:c.1018delG:p.G341Afs*41	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.265543769	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr17	35012598	12A2p6	cell line	sgMsh2	35012598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	93	0	0	NA	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon17:c.A2097G:p.I699M	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	35019786	12A2p6	cell line	sgMsh2	35019786	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	51	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon6:c.A849T:p.E283D,Vwa7:NM_138582:exon6:c.A849T:p.E283D"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.8828207	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	35140842	12A2p6	cell line	sgMsh2	35140842	A	G	SNV	Mutect2;Vardict	2	0.174	23	0	0	NA	exonic	Bag6	nonsynonymous SNV	"Bag6:NM_001252468:exon7:c.A776G:p.H259R,Bag6:NM_001252469:exon7:c.A776G:p.H259R,Bag6:NM_001372262:exon7:c.A776G:p.H259R,Bag6:NM_001372279:exon7:c.A776G:p.H259R,Bag6:NM_001372280:exon7:c.A776G:p.H259R,Bag6:NM_001372281:exon7:c.A776G:p.H259R,Bag6:NM_001372282:exon7:c.A776G:p.H259R,Bag6:NM_001372283:exon7:c.A776G:p.H259R,Bag6:NM_001372289:exon7:c.A776G:p.H259R,Bag6:NM_001372290:exon7:c.A776G:p.H259R,Bag6:NM_001372260:exon8:c.A830G:p.H277R,Bag6:NM_001372261:exon8:c.A830G:p.H277R,Bag6:NM_001372265:exon8:c.A830G:p.H277R,Bag6:NM_001372266:exon8:c.A830G:p.H277R,Bag6:NM_001372267:exon8:c.A830G:p.H277R,Bag6:NM_001372268:exon8:c.A830G:p.H277R,Bag6:NM_001372269:exon8:c.A830G:p.H277R,Bag6:NM_001372270:exon8:c.A830G:p.H277R,Bag6:NM_001372271:exon8:c.A830G:p.H277R,Bag6:NM_001372272:exon8:c.A830G:p.H277R,Bag6:NM_001372273:exon8:c.A830G:p.H277R,Bag6:NM_001372274:exon8:c.A830G:p.H277R,Bag6:NM_001372275:exon8:c.A830G:p.H277R,Bag6:NM_001372276:exon8:c.A830G:p.H277R,Bag6:NM_001372277:exon8:c.A830G:p.H277R,Bag6:NM_001372278:exon8:c.A830G:p.H277R,Bag6:NM_001372284:exon8:c.A830G:p.H277R,Bag6:NM_001372285:exon8:c.A830G:p.H277R,Bag6:NM_001372286:exon8:c.A830G:p.H277R,Bag6:NM_001372287:exon8:c.A830G:p.H277R,Bag6:NM_001372288:exon8:c.A830G:p.H277R,Bag6:NM_001372291:exon8:c.A830G:p.H277R,Bag6:NM_057171:exon8:c.A830G:p.H277R"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.745235738	1	0.7462239	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	35637549	12A2p6	cell line	sgMsh2	35637549	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	140	0	0	NA	exonic	Mucl3	stopgain	Mucl3:NM_001033366:exon2:c.T1157A:p.L386X	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999859	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	35978435	12A2p6	cell line	sgMsh2	35978435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	128	0	0	NA	exonic	Prr3	nonsynonymous SNV	"Prr3:NM_145487:exon2:c.A121G:p.S41G,Prr3:NM_001384114:exon3:c.A121G:p.S41G,Prr3:NM_001384116:exon3:c.A121G:p.S41G"	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999676	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	36670141	12A2p6	cell line	sgMsh2	36670141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	145	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon5:c.A902G:p.E301G	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.99999	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	36988997	12A2p6	cell line	sgMsh2	36988997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	134	0	0	NA	exonic	H2-M5	nonsynonymous SNV	H2-M5:NM_001115075:exon2:c.T284C:p.I95T	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999786	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	37197051	12A2p6	cell line	sgMsh2	37197051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	51	0	0	NA	exonic	Olfr94	nonsynonymous SNV	Olfr94:NM_001011518:exon1:c.A916G:p.S306G	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	1	0.9932568	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	37270790	12A2p6	cell line	sgMsh2	37270790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	70	0	0	NA	exonic	H2-M3	synonymous SNV	H2-M3:NM_013819:exon2:c.C342A:p.G114G	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.753801666	1	0.6264223	GCG	synonymous	NA	NA	NA	NA
SSC	chr17	37336968	12A2p6	cell line	sgMsh2	37336968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	411	0	0	NA	exonic	Olfr103	nonsynonymous SNV	Olfr103:NM_146833:exon1:c.A263G:p.K88R	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.882290586	1	0.9999989	TTT	nonsynonymous	TTTG	9	TTTGTTTGT	NA
SSC	chr17	37590059	12A2p6	cell line	sgMsh2	37590059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	570	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.T293C:p.M98T	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	37590324	12A2p6	cell line	sgMsh2	37590324	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.232	390	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A28T:p.S10C	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	37672835	12A2p6	cell line	sgMsh2	37672835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	413	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.A811G:p.S271G	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	485	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
SSC	chr17	37850831	12A2p6	cell line	sgMsh2	37850831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	562	0	0	NA	exonic	Olfr126	stopgain	Olfr126:NM_146890:exon1:c.C238T:p.Q80X	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.818046126	1	0.9977103	TCA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Strelka2;Vardict	2	0.1974	233	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.845457096	NA	NA	AGA	frameshift	A	5	AAAAA	1
SSC	chr17	38130501	12A2p6	cell line	sgMsh2	38130501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	159	0	0	NA	exonic	Olfr132	synonymous SNV	Olfr132:NM_001005481:exon1:c.A690G:p.S230S	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999962	GTG	synonymous	NA	NA	NA	NA
SSC	chr17	38148878	12A2p6	cell line	sgMsh2	38148878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	341	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.T289C:p.C97R	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	38274953	12A2p6	cell line	sgMsh2	38274953	T	-	Deletion	Mutect2;Vardict	2	0.04	270	0	0	NA	exonic	Olfr138	frameshift deletion	Olfr138:NM_130868:exon1:c.181delT:p.F62Sfs*44	17qB1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.17131856	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr17	40222479	12A2p6	cell line	sgMsh2	40222479	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	117	0	0	NA	exonic	Crisp3	frameshift deletion	Crisp3:NM_009639:exon8:c.660delA:p.K220Nfs*16	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	267	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	6.44E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	40783774	12A2p6	cell line	sgMsh2	40783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	157	0	0	NA	exonic	Crisp2	nonsynonymous SNV	"Crisp2:NM_001204071:exon7:c.T409C:p.Y137H,Crisp2:NM_009420:exon7:c.T409C:p.Y137H"	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.999985	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	40880525	12A2p6	cell line	sgMsh2	40880525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	36	0	0	NA	exonic	9130008F23Rik	synonymous SNV	9130008F23Rik:NM_027834:exon1:c.A12G:p.L4L	17qB2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9811351	GTA	synonymous	NA	NA	NA	NA
SSC	chr17	43487197	12A2p6	cell line	sgMsh2	43487197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	178	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon8:c.A706G:p.S236G	17qB3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	46241457	12A2p6	cell line	sgMsh2	46241457	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	27	0	0	NA	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon30:c.3215delT:p.F1073Sfs*4	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.73666981	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.753801666	1	9.29E-08	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	46310518	12A2p6	cell line	sgMsh2	46310518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	69	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon11:c.G2585T:p.G862V,Abcc10:NM_001347396:exon12:c.G2708T:p.G903V,Abcc10:NM_170680:exon12:c.G2708T:p.G903V"	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.009912888	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	46579147	12A2p6	cell line	sgMsh2	46579147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	108	0	0	NA	exonic	Ptk7	synonymous SNV	Ptk7:NM_175168:exon10:c.A1497G:p.P499P	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9995141	GTG	synonymous	GGT	8	GGTGGTGG	NA
SSC	chr17	46684696	12A2p6	cell line	sgMsh2	46684696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	94	0	0	NA	exonic	Ppp2r5d	nonsynonymous SNV	"Ppp2r5d:NM_001357684:exon12:c.T1429C:p.C477R,Ppp2r5d:NM_009358:exon12:c.T1426C:p.C476R"	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.612463853	2	0.9862221	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	49070103	12A2p6	cell line	sgMsh2	49070103	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon2:c.G211T:p.D71Y	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	49459065	12A2p6	cell line	sgMsh2	49459065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	27	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001379372:exon24:c.T2970C:p.R990R,Daam2:NM_001008231:exon25:c.T3114C:p.R1038R,Daam2:NM_001379371:exon25:c.T3054C:p.R1018R"	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9653363	TAC	synonymous	NA	NA	NA	NA
SSC	chr17	50289226	12A2p6	cell line	sgMsh2	50289226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	93	0	0	NA	exonic	Dazl	nonsynonymous SNV	"Dazl:NM_001277863:exon2:c.T16C:p.S6P,Dazl:NM_010021:exon2:c.T16C:p.S6P"	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	52893952	12A2p6	cell line	sgMsh2	52893952	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.242	110	0	0	NA	exonic	Kcnh8	frameshift insertion	Kcnh8:NM_001031811:exon9:c.1414dupA:p.I472Nfs*7	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
SSC	chr17	53401448	12A2p6	cell line	sgMsh2	53401448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	59	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon11:c.T2193C:p.A731A	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9961186	CAG	synonymous	NA	NA	NA	NA
SSC	chr17	53679523	12A2p6	cell line	sgMsh2	53679523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	156	0	0	NA	exonic	Sgo1	synonymous SNV	Sgo1:NM_028232:exon7:c.A639G:p.A213A	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	GTG	synonymous	NA	NA	NA	NA
SSC	chr17	54281812	12A2p6	cell line	sgMsh2	54281812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	62	0	0	NA	exonic	Slc5a7	nonsynonymous SNV	Slc5a7:NM_022025:exon7:c.A806G:p.Y269C	17qC	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9240519	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	56096972	12A2p6	cell line	sgMsh2	56096972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	89	0	0	NA	exonic	Hdgfl2	nonsynonymous SNV	"Hdgfl2:NM_001304784:exon7:c.A827G:p.D276G,Hdgfl2:NM_001304785:exon7:c.A797G:p.D266G,Hdgfl2:NM_001331053:exon7:c.A827G:p.D276G,Hdgfl2:NM_008233:exon7:c.A800G:p.D267G"	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	GAC	nonsynonymous	CTCAGA	12	CTCAGACTCAGA	NA
SSC	chr17	56270628	12A2p6	cell line	sgMsh2	56270628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	118	0	0	NA	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.T1466C:p.I489T	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999351	GAT	nonsynonymous	G	5	GGGGG	NA
SSC	chr17	56271980	12A2p6	cell line	sgMsh2	56271980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	43	0	0	NA	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.G114T:p.Q38H	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9883096	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	136	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	0.9998808	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	57033758	12A2p6	cell line	sgMsh2	57033758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	128	0	0	NA	exonic	Slc25a41	nonsynonymous SNV	"Slc25a41:NM_175333:exon6:c.A713G:p.Y238C,Slc25a41:NM_001346527:exon7:c.A671G:p.Y224C"	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.783782414	1	0.7372186	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	57522504	12A2p6	cell line	sgMsh2	57522504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	167	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon4:c.A1374T:p.K458N,Vmn2r120:NM_001104591:exon5:c.A1392T:p.K464N"	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999978	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	58294347	12A2p6	cell line	sgMsh2	58294347	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	228	0	0	NA	exonic	Cntnap5c	frameshift deletion	Cntnap5c:NM_001081653:exon16:c.2489delA:p.I831Sfs*11	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr17	58313752	12A2p6	cell line	sgMsh2	58313752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	197	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.T2825C:p.L942P	17qD	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	66685624	12A2p6	cell line	sgMsh2	66685624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	93	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon28:c.A3995G:p.N1332S,Ptprm:NM_001357625:exon30:c.A4097G:p.N1366S"	17qE1.1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9989985	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	67756754	12A2p6	cell line	sgMsh2	67756754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	85	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon16:c.T2272C:p.C758R	17qE1.1	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.848026874	1	0.9529825	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	69262266	12A2p6	cell line	sgMsh2	69262266	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	107	0	0	NA	exonic	Epb41l3	nonsynonymous SNV	"Epb41l3:NM_001355732:exon12:c.G1099A:p.E367K,Epb41l3:NM_001355733:exon12:c.G1450A:p.E484K,Epb41l3:NM_001355734:exon12:c.G1504A:p.E502K,Epb41l3:NM_001355735:exon12:c.G1450A:p.E484K,Epb41l3:NM_001355736:exon12:c.G1504A:p.E502K,Epb41l3:NM_013813:exon12:c.G1504A:p.E502K"	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	69388393	12A2p6	cell line	sgMsh2	69388393	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	195	0	0	NA	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.C1085T:p.A362V,Zbtb14:NM_001356283:exon3:c.C1085T:p.A362V,Zbtb14:NM_009547:exon3:c.C1085T:p.A362V"	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	71578139	12A2p6	cell line	sgMsh2	71578139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	82	0	0	NA	exonic	Spdya	nonsynonymous SNV	"Spdya:NM_001142631:exon6:c.G587A:p.R196Q,Spdya:NM_029254:exon6:c.G587A:p.R196Q"	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9685215	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	71828569	12A2p6	cell line	sgMsh2	71828569	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	87	0	0	NA	exonic	Clip4	frameshift deletion	"Clip4:NM_175378:exon10:c.1174delT:p.Y392Tfs*4,Clip4:NM_001271483:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_001271484:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_030179:exon11:c.1315delT:p.Y439Tfs*4"	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTA	frameshift	NA	NA	NA	-1
SSC	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	26	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.719537954	1	0.6911135	CTG	synonymous	NA	NA	NA	NA
SSC	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	27	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr17	73943875	12A2p6	cell line	sgMsh2	73943875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	126	0	0	NA	exonic	Xdh	synonymous SNV	Xdh:NM_011723:exon2:c.A81T:p.T27T	17qE2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999627	TTG	synonymous	NA	NA	NA	NA
SSC	chr17	74634868	12A2p6	cell line	sgMsh2	74634868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon42:c.T8210C:p.L2737P	17qE2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9553482	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr17	74840305	12A2p6	cell line	sgMsh2	74840305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	122	0	0	NA	exonic	Ttc27	synonymous SNV	Ttc27:NM_152817:exon16:c.A1851G:p.K617K	17qE2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.9913416	AAG	synonymous	NA	NA	NA	NA
SSC	chr17	75282990	12A2p6	cell line	sgMsh2	75282990	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	149	0	0	NA	exonic	Ltbp1	nonsynonymous SNV	"Ltbp1:NM_001331233:exon11:c.C1608A:p.S536R,Ltbp1:NM_001331234:exon11:c.C1611A:p.S537R,Ltbp1:NM_001331235:exon11:c.C1449A:p.S483R,Ltbp1:NM_001331236:exon11:c.C1452A:p.S484R,Ltbp1:NM_001331237:exon11:c.C1452A:p.S484R,Ltbp1:NM_206958:exon11:c.C1611A:p.S537R,Ltbp1:NM_019919:exon15:c.C2565A:p.S855R"	17qE2	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999925	GCC	nonsynonymous	GCCA	8	GCCAGCCA	NA
SSC	chr17	78943279	12A2p6	cell line	sgMsh2	78943279	T	-	Deletion	Mutect2;Vardict	2	0.029	309	0	0	NA	exonic	Ndufaf7	frameshift deletion	Ndufaf7:NM_028611:exon6:c.634delT:p.F213Lfs*30	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.124205956	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr17	78951959	12A2p6	cell line	sgMsh2	78951959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	125	0	0	NA	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon18:c.T2286C:p.S762S,Prkd3:NM_001171004:exon19:c.T2571C:p.S857S,Prkd3:NM_029239:exon19:c.T2568C:p.S856S"	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9998464	CAC	synonymous	CAT	8	CATCATCA	NA
SSC	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	129	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999697	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	79865139	12A2p6	cell line	sgMsh2	79865139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	167	0	0	NA	exonic	Atl2	nonsynonymous SNV	"Atl2:NM_001357752:exon3:c.T401C:p.L134S,Atl2:NM_001357753:exon3:c.T401C:p.L134S,Atl2:NM_019717:exon3:c.T401C:p.L134S"	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999978	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	80216772	12A2p6	cell line	sgMsh2	80216772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	214	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.T859C:p.Y287H	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr17	80433721	12A2p6	cell line	sgMsh2	80433721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	exonic	Sos1	nonsynonymous SNV	Sos1:NM_009231:exon10:c.A1634T:p.Q545L	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	81648517	12A2p6	cell line	sgMsh2	81648517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	156	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon2:c.A1091G:p.Q364R,Slc8a1:NM_001286684:exon2:c.A1091G:p.Q364R,Slc8a1:NM_011406:exon2:c.A1091G:p.Q364R"	17qE3	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	84692924	12A2p6	cell line	sgMsh2	84692924	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	102	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon5:c.A530T:p.Y177F,Abcg8:NM_001347418:exon6:c.A908T:p.Y303F,Abcg8:NM_026180:exon6:c.A911T:p.Y304F"	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.458	47	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
SSC	chr17	87720926	12A2p6	cell line	sgMsh2	87720926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	100	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon15:c.T2502C:p.A834A	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	CTA	synonymous	NA	NA	NA	NA
SSC	chr17	88636058	12A2p6	cell line	sgMsh2	88636058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	103	0	0	NA	exonic	Ston1	synonymous SNV	Ston1:NM_029858:exon2:c.T891C:p.P297P	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8811914	CTG	synonymous	NA	NA	NA	NA
SSC	chr17	88636398	12A2p6	cell line	sgMsh2	88636398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	116	0	0	NA	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon2:c.T1231A:p.C411S	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr17	88742385	12A2p6	cell line	sgMsh2	88742385	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.21	129	0	0	NA	exonic	Lhcgr	frameshift insertion	Lhcgr:NM_013582:exon11:c.1711dupA:p.I571Nfs*2	17qE4	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.899422442	NA	NA	AAT	frameshift	T	5	TTTTT	1
SSC	chr17	90037207	12A2p6	cell line	sgMsh2	90037207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	101	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T290C:p.V97A,Nrxn1:NM_001347419:exon3:c.T299C:p.V100A,Nrxn1:NM_001346960:exon6:c.T1187C:p.V396A,Nrxn1:NM_001346961:exon6:c.T1178C:p.V393A,Nrxn1:NM_001346958:exon7:c.T1268C:p.V423A,Nrxn1:NM_001346959:exon7:c.T1277C:p.V426A,Nrxn1:NM_001346957:exon19:c.T4253C:p.V1418A,Nrxn1:NM_177284:exon21:c.T4358C:p.V1453A,Nrxn1:NM_020252:exon23:c.T4394C:p.V1465A"	17qE5	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997888	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr17	90630126	12A2p6	cell line	sgMsh2	90630126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon8:c.T1878C:p.A626A,Nrxn1:NM_177284:exon8:c.T1866C:p.A622A,Nrxn1:NM_020252:exon10:c.T1902C:p.A634A"	17qE5	chr17-20595780-94740433	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.9918323	GAG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
SSC	chr18	5103600	12A2p6	cell line	sgMsh2	5103600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	81	0	0	NA	exonic	Svil	synonymous SNV	"Svil:NM_001347449:exon23:c.C4059T:p.H1353H,Svil:NM_153153:exon27:c.C5271T:p.H1757H"	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9991543	ACC	synonymous	NA	NA	NA	NA
SSC	chr18	5766932	12A2p6	cell line	sgMsh2	5766932	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	82	0	0	NA	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.A1274C:p.N425T,Zeb1:NM_011546:exon6:c.A1442C:p.N481T,Zeb1:NM_001360981:exon7:c.A1391C:p.N464T"	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.999211	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	6936937	12A2p6	cell line	sgMsh2	6936937	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	96	0	0	NA	exonic	Mkx	synonymous SNV	Mkx:NM_177595:exon7:c.T993C:p.S331S	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.316939337	3	0.9646125	AAC	synonymous	NA	NA	NA	NA
SSC	chr18	9213102	12A2p6	cell line	sgMsh2	9213102	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	0	0	NA	exonic	Fzd8	synonymous SNV	Fzd8:NM_008058:exon1:c.G183T:p.T61T	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9737118	CGC	synonymous	NA	NA	NA	NA
SSC	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	105	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.99984	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	13015915	12A2p6	cell line	sgMsh2	13015915	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	265	0	0	NA	exonic	Hrh4	nonsynonymous SNV	Hrh4:NM_153087:exon2:c.T333G:p.D111E	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	3.41E-09	ATC	nonsynonymous	CGAT	8	CGATCGAT	NA
SSC	chr18	15452991	12A2p6	cell line	sgMsh2	15452991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	274	0	0	NA	exonic	Chst9	nonsynonymous SNV	"Chst9:NM_199055:exon5:c.A514G:p.I172V,Chst9:NM_001364992:exon6:c.A376G:p.I126V"	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	2.29E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr18	16629588	12A2p6	cell line	sgMsh2	16629588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	176	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon10:c.A1469G:p.D490G	18qA1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999988	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	98	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	1	0.9997399	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	21148087	12A2p6	cell line	sgMsh2	21148087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	210	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1211G:p.H404R	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.522521609	2	2.19E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	22109705	12A2p6	cell line	sgMsh2	22109705	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon10:c.A852C:p.K284N	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	22524051	12A2p6	cell line	sgMsh2	22524051	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	46	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.A5117T:p.N1706I	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8272761	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	22920873	12A2p6	cell line	sgMsh2	22920873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	85	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon4:c.T362C:p.I121T,Nol4:NM_001347509:exon4:c.T581C:p.I194T,Nol4:NM_001347510:exon4:c.T581C:p.I194T,Nol4:NM_199024:exon4:c.T581C:p.I194T,Nol4:NM_001361223:exon5:c.T116C:p.I39T,Nol4:NM_001361224:exon5:c.T116C:p.I39T,Nol4:NM_001361225:exon5:c.T116C:p.I39T"	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993592	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	106	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	24121713	12A2p6	cell line	sgMsh2	24121713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	31	0	0	NA	exonic	Ino80c	nonsynonymous SNV	Ino80c:NM_172625:exon1:c.A89G:p.N30S	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9735165	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	25112562	12A2p6	cell line	sgMsh2	25112562	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	94	0	0	NA	exonic	Fhod3	nonsynonymous SNV	"Fhod3:NM_001289654:exon19:c.T3215G:p.L1072R,Fhod3:NM_001289655:exon20:c.T3572G:p.L1191R,Fhod3:NM_175276:exon21:c.T3668G:p.L1223R"	18qA2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9972158	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	31774321	12A2p6	cell line	sgMsh2	31774321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	93	0	0	NA	exonic	Ammecr1l	stopgain	"Ammecr1l:NM_001242430:exon4:c.G715T:p.G239X,Ammecr1l:NM_153515:exon4:c.G493T:p.G165X"	18qB1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9950244	AGG	nonsynonymous	TTCA	8	TTCATTCA	NA
SSC	chr18	33876985	12A2p6	cell line	sgMsh2	33876985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	90	0	0	NA	exonic	Epb41l4a	nonsynonymous SNV	Epb41l4a:NM_013512:exon8:c.C566A:p.P189H	18qB1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	91	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	34448073	12A2p6	cell line	sgMsh2	34448073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	77	0	0	NA	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon17:c.A2035G:p.R679G	18qB1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	118	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9994589	TAC	synonymous	T	5	TTTTT	NA
SSC	chr18	36529735	12A2p6	cell line	sgMsh2	36529735	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	108	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_001271544:exon4:c.A542T:p.K181M,Slc4a9:NM_001271545:exon4:c.A542T:p.K181M,Slc4a9:NM_001271546:exon4:c.A542T:p.K181M,Slc4a9:NM_001271547:exon4:c.A542T:p.K181M,Slc4a9:NM_172830:exon4:c.A542T:p.K181M"	18qB2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998701	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	36998818	12A2p6	cell line	sgMsh2	36998818	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	180	0	0	NA	exonic	Pcdha9	synonymous SNV	Pcdha9:NM_138661:exon1:c.T939G:p.S313S	18qB2	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.145620776	3	1.00E-09	CTT	synonymous	NA	NA	NA	NA
SSC	chr18	37344002	12A2p6	cell line	sgMsh2	37344002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	243	0	0	NA	exonic	Pcdhb7	synonymous SNV	Pcdhb7:NM_053132:exon1:c.A2190G:p.V730V	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	1.21E-08	TAT	synonymous	NA	NA	NA	NA
SSC	chr18	37355814	12A2p6	cell line	sgMsh2	37355814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	207	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.A544G:p.T182A	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37357271	12A2p6	cell line	sgMsh2	37357271	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	380	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.G2001T:p.Q667H	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	1.76E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37421758	12A2p6	cell line	sgMsh2	37421758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	371	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.A140G:p.N47S	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37485357	12A2p6	cell line	sgMsh2	37485357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	119	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.A199G:p.I67V	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.9959961	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37515443	12A2p6	cell line	sgMsh2	37515443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	329	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1624G:p.S542G	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	1.03E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37676455	12A2p6	cell line	sgMsh2	37676455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	119	0	0	NA	exonic	Pcdhga3	nonsynonymous SNV	Pcdhga3:NM_033586:exon1:c.A1960G:p.T654A	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9985642	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	180	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999991	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37744153	12A2p6	cell line	sgMsh2	37744153	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	133	0	0	NA	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.C1913T:p.A638V	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999771	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	37756153	12A2p6	cell line	sgMsh2	37756153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	220	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A213G:p.Q71Q	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
SSC	chr18	37816197	12A2p6	cell line	sgMsh2	37816197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	81	0	0	NA	exonic	Pcdhgc4	nonsynonymous SNV	Pcdhgc4:NM_033582:exon1:c.A665G:p.N222S	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.9219609	AAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr18	37820769	12A2p6	cell line	sgMsh2	37820769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1095G:p.V365V	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9787782	TAG	synonymous	NA	NA	NA	NA
SSC	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	184	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9999861	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	106	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	GTT	nonsynonymous	T	5	TTTTT	NA
SSC	chr18	41986686	12A2p6	cell line	sgMsh2	41986686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	59	0	0	NA	exonic	Grxcr2	synonymous SNV	Grxcr2:NM_001033426:exon3:c.T588C:p.D196D	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9961186	CAT	synonymous	NA	NA	NA	NA
SSC	chr18	42202698	12A2p6	cell line	sgMsh2	42202698	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	61	0	0	NA	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon32:c.A3352G:p.M1118V	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9966199	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	42519380	12A2p6	cell line	sgMsh2	42519380	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	51	0	0	NA	exonic	Tcerg1	synonymous SNV	"Tcerg1:NM_001039474:exon2:c.G72A:p.Q24Q,Tcerg1:NM_001289526:exon2:c.G72A:p.Q24Q,Tcerg1:NM_001360881:exon2:c.G72A:p.Q24Q"	18qB3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9932568	AGC	synonymous	NA	NA	NA	NA
SSC	chr18	46905292	12A2p6	cell line	sgMsh2	46905292	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	160	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon20:c.C2912T:p.T971M	18qC	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.9268307	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	47248675	12A2p6	cell line	sgMsh2	47248675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	126	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.T2639C:p.L880P,Sema6a:NM_018744:exon19:c.T2804C:p.L935P"	18qC	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999627	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	52520854	12A2p6	cell line	sgMsh2	52520854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	124	0	0	NA	exonic	Lox	nonsynonymous SNV	"Lox:NM_010728:exon6:c.T1169C:p.V390A,Lox:NM_001286181:exon7:c.T1169C:p.V390A,Lox:NM_001286182:exon7:c.T1169C:p.V390A"	18qD1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	56749782	12A2p6	cell line	sgMsh2	56749782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	55	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon10:c.T1698C:p.A566A	18qD3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7672173	CTG	synonymous	NA	NA	NA	NA
SSC	chr18	58058398	12A2p6	cell line	sgMsh2	58058398	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	112	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon36:c.G4652T:p.C1551F	18qD3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9985969	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr18	59011095	12A2p6	cell line	sgMsh2	59011095	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	85	0	0	NA	exonic	Adamts19	frameshift deletion	Adamts19:NM_175506:exon18:c.2748delG:p.L919Sfs*27	18qD3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
SSC	chr18	60391010	12A2p6	cell line	sgMsh2	60391010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	139	0	0	NA	exonic	Iigp1	nonsynonymous SNV	"Iigp1:NM_001146275:exon3:c.A1199G:p.E400G,Iigp1:NM_021792:exon3:c.A1199G:p.E400G"	18qD3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9995001	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	61081937	12A2p6	cell line	sgMsh2	61081937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	0	0	NA	exonic	Pdgfrb	nonsynonymous SNV	"Pdgfrb:NM_001146268:exon22:c.T3025C:p.Y1009H,Pdgfrb:NM_008809:exon22:c.T3022C:p.Y1008H"	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr18	61140942	12A2p6	cell line	sgMsh2	61140942	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.154	67	0	0	NA	exonic	Hmgxb3	nonsynonymous SNV	"Hmgxb3:NM_178277:exon15:c.T2573A:p.L858Q,Hmgxb3:NM_134134:exon16:c.T2477A:p.L826Q"	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.659576458	2	0.8271421	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	61299670	12A2p6	cell line	sgMsh2	61299670	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	75	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon11:c.A2860G:p.T954A,Ppargc1b:NM_001364996:exon12:c.A2908G:p.T970A"	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9987181	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	63926639	12A2p6	cell line	sgMsh2	63926639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	65	0	0	NA	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon23:c.A3793G:p.T1265A,Wdr7:NM_001014981:exon24:c.A3889G:p.T1297A"	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	2	1	1	0.9974372	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
SSC	chr18	64386492	12A2p6	cell line	sgMsh2	64386492	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	exonic	Onecut2	nonsynonymous SNV	Onecut2:NM_194268:exon2:c.T1379G:p.I460S	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	65349901	12A2p6	cell line	sgMsh2	65349901	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	181	0	0	NA	exonic	Alpk2	synonymous SNV	Alpk2:NM_001037294:exon4:c.C1035T:p.S345S	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9998294	CGC	synonymous	NA	NA	NA	NA
SSC	chr18	65451559	12A2p6	cell line	sgMsh2	65451559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	58	0	0	NA	exonic	Malt1	nonsynonymous SNV	"Malt1:NM_172833:exon7:c.A965G:p.N322S,Malt1:NM_001365019:exon8:c.A998G:p.N333S"	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9958408	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr18	66859714	12A2p6	cell line	sgMsh2	66859714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	96	0	0	NA	exonic	Mc4r	synonymous SNV	Mc4r:NM_016977:exon1:c.T327C:p.S109S	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	TAC	synonymous	ATCCGT	13	ATCCGTATCCGTA	NA
SSC	chr18	67310692	12A2p6	cell line	sgMsh2	67310692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	46	0	0	NA	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon5:c.A433T:p.T145S	18qE1	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.990486	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr18	79086842	12A2p6	cell line	sgMsh2	79086842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	85	0	0	NA	exonic	Setbp1	synonymous SNV	Setbp1:NM_053099:exon2:c.A174G:p.S58S	18qE3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.792348342	1	0.8050097	CTG	synonymous	NA	NA	NA	NA
SSC	chr18	80449667	12A2p6	cell line	sgMsh2	80449667	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	64	0	0	NA	exonic	Ctdp1	nonsynonymous SNV	Ctdp1:NM_026295:exon8:c.A1612G:p.S538G	18qE3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr18	80971684	12A2p6	cell line	sgMsh2	80971684	T	-	Deletion	Strelka2;Vardict	2	0.1724	29	0	0	NA	exonic	Sall3	frameshift deletion	Sall3:NM_001369133:exon2:c.3028delA:p.S1010Vfs*30	18qE3	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.738382995	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	114	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9965778	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	3362184	12A2p6	cell line	sgMsh2	3362184	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	148	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon6:c.T655A:p.W219R	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	132	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	151	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	3659246	12A2p6	cell line	sgMsh2	3659246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	79	0	0	NA	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon2:c.T483C:p.H161H	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
SSC	chr19	4267802	12A2p6	cell line	sgMsh2	4267802	T	-	Deletion	Mutect2;Vardict	2	0.061	83	0	0	NA	exonic	Ssh3	frameshift deletion	"Ssh3:NM_001356620:exon3:c.281delA:p.K94Sfs*10,Ssh3:NM_001374687:exon3:c.284delA:p.K95Sfs*10,Ssh3:NM_198113:exon3:c.284delA:p.K95Sfs*10"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr19	4290661	12A2p6	cell line	sgMsh2	4290661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	225	0	0	NA	exonic	Grk2	nonsynonymous SNV	"Grk2:NM_001290818:exon10:c.A769G:p.M257V,Grk2:NM_130863:exon11:c.A643G:p.M215V"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	4450969	12A2p6	cell line	sgMsh2	4450969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	120	0	0	NA	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1052G:p.N351S	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	4613371	12A2p6	cell line	sgMsh2	4613371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	40	0	0	NA	exonic	Lrfn4	synonymous SNV	Lrfn4:NM_153388:exon2:c.T1134C:p.S378S	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
SSC	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.624	65	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	102	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	4918080	12A2p6	cell line	sgMsh2	4918080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	170	0	0	NA	exonic	Dpp3	nonsynonymous SNV	"Dpp3:NM_001360711:exon8:c.T869C:p.I290T,Dpp3:NM_133803:exon8:c.T869C:p.I290T"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5026399	12A2p6	cell line	sgMsh2	5026399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	134	0	0	NA	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon4:c.T314C:p.I105T	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5480730	12A2p6	cell line	sgMsh2	5480730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	106	0	0	NA	exonic	Efemp2	nonsynonymous SNV	"Efemp2:NM_001164352:exon9:c.T1216G:p.F406V,Efemp2:NM_001374680:exon10:c.T1195G:p.F399V,Efemp2:NM_021474:exon10:c.T1159G:p.F387V"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	114	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5672533	12A2p6	cell line	sgMsh2	5672533	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	54	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon26:c.C4130T:p.A1377V	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	110	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	5884465	12A2p6	cell line	sgMsh2	5884465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	0	0	NA	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_001361974:exon5:c.A286G:p.I96V,Slc25a45:NM_134154:exon5:c.A460G:p.I154V,Slc25a45:NM_001361973:exon6:c.A460G:p.I154V"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	6011343	12A2p6	cell line	sgMsh2	6011343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	58	0	0	NA	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon5:c.C544A:p.Q182K,Capn1:NM_007600:exon5:c.C544A:p.Q182K"	19qA	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	54	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.475409005	2	0.9806829	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	7014850	12A2p6	cell line	sgMsh2	7014850	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	44	0	0	NA	exonic	Fermt3	nonsynonymous SNV	"Fermt3:NM_001362399:exon3:c.A161G:p.N54S,Fermt3:NM_153795:exon3:c.A161G:p.N54S"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	2	1	1	0.9890849	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	7271479	12A2p6	cell line	sgMsh2	7271479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	0	0	NA	exonic	Rcor2	synonymous SNV	"Rcor2:NM_001320554:exon8:c.A816G:p.A272A,Rcor2:NM_054048:exon9:c.A816G:p.A272A"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	2	1	1	0.9983086	CAG	synonymous	NA	NA	NA	NA
SSC	chr19	8945845	12A2p6	cell line	sgMsh2	8945845	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	201	0	0	NA	exonic	Mta2	frameshift deletion	Mta2:NM_011842:exon4:c.280delT:p.F94Lfs*8	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.706689062	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr19	9016193	12A2p6	cell line	sgMsh2	9016193	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	255	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14840T:p.N4947I	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.633878673	2	0.9999952	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	49	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.531087537	2	0.9453276	GTC	synonymous	NA	NA	NA	NA
SSC	chr19	10200637	12A2p6	cell line	sgMsh2	10200637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	104	0	0	NA	exonic	Fen1	nonsynonymous SNV	"Fen1:NM_001271614:exon2:c.A442G:p.M148V,Fen1:NM_001271615:exon2:c.A442G:p.M148V,Fen1:NM_007999:exon3:c.A442G:p.M148V"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9912505	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	10218466	12A2p6	cell line	sgMsh2	10218466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	81	0	0	NA	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon12:c.G1789A:p.E597K	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	2	1	1	0.9991543	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	10444168	12A2p6	cell line	sgMsh2	10444168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	177	0	0	NA	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon8:c.A1091G:p.N364S,Syt7:NM_173067:exon9:c.A1223G:p.N408S,Syt7:NM_173068:exon10:c.A1583G:p.N528S,Syt7:NM_001373944:exon11:c.A1715G:p.N572S"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9998849	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	128	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.882290586	1	0.994887	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	110	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.770933522	1	0.6492224	GTA	synonymous	NA	NA	NA	NA
SSC	chr19	11251812	12A2p6	cell line	sgMsh2	11251812	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	249	0	0	NA	exonic	Ms4a1	synonymous SNV	Ms4a1:NM_007641:exon7:c.A729C:p.L243L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.561068285	2	1.61E-08	TTA	synonymous	NA	NA	NA	NA
SSC	chr19	11283759	12A2p6	cell line	sgMsh2	11283759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	272	0	0	NA	exonic	Ms4a5	nonsynonymous SNV	Ms4a5:NM_183190:exon1:c.T35C:p.L12P	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.9770419	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	12088088	12A2p6	cell line	sgMsh2	12088088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	439	0	0	NA	exonic	Olfr1426	nonsynonymous SNV	Olfr1426:NM_146809:exon3:c.A703G:p.I235V	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.766650558	2	0.9255858	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	12209969	12A2p6	cell line	sgMsh2	12209969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	740	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.A402G:p.S134S	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.69384017	2	1.07E-09	CAT	synonymous	NA	NA	NA	NA
SSC	chr19	12588068	12A2p6	cell line	sgMsh2	12588068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	294	0	0	NA	exonic	Fam111a	nonsynonymous SNV	"Fam111a:NM_001346545:exon3:c.T1180C:p.Y394H,Fam111a:NM_026640:exon4:c.T1312C:p.Y438H"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.788065378	1	0.7126883	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	12764157	12A2p6	cell line	sgMsh2	12764157	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	167	0	0	NA	exonic	Cntf	nonsynonymous SNV	Cntf:NM_170786:exon2:c.C338T:p.T113M	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	0.9995711	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	12999847	12A2p6	cell line	sgMsh2	12999847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	246	0	0	NA	exonic	Olfr1451	nonsynonymous SNV	Olfr1451:NM_146705:exon1:c.T860G:p.V287G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.561068285	2	2.00E-08	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	13364669	12A2p6	cell line	sgMsh2	13364669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	241	0	0	NA	exonic	Olfr1467	synonymous SNV	Olfr1467:NM_146691:exon1:c.C40T:p.L14L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.9998352	GCT	synonymous	NA	NA	NA	NA
SSC	chr19	13364760	12A2p6	cell line	sgMsh2	13364760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	317	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T131C:p.M44T	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.612463853	2	1.87E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	13454083	12A2p6	cell line	sgMsh2	13454083	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	561	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T433C:p.C145R	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.805197234	1	0.974552	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
SSC	chr19	13502626	12A2p6	cell line	sgMsh2	13502626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	913	0	0	NA	exonic	Olfr1477	synonymous SNV	Olfr1477:NM_146696:exon2:c.T282C:p.N94N	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.638161637	2	1	ATG	synonymous	NA	NA	NA	NA
SSC	chr19	13586101	12A2p6	cell line	sgMsh2	13586101	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	748	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.T796A:p.S266T	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.770933522	2	0.9858062	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	13654758	12A2p6	cell line	sgMsh2	13654758	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.164	278	0	0	NA	exonic	Olfr1490	frameshift insertion	Olfr1490:NM_001011832:exon1:c.314dupT:p.G106Wfs*3	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.702406098	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC	chr19	13705156	12A2p6	cell line	sgMsh2	13705156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	315	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A328G:p.T110A	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.723820918	2	0.9973599	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	13861984	12A2p6	cell line	sgMsh2	13861984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	416	0	0	NA	exonic	Olfr1502	nonsynonymous SNV	Olfr1502:NM_146797:exon1:c.A190G:p.S64G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.899422442	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	13919023	12A2p6	cell line	sgMsh2	13919023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	304	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.T2G:p.M1R	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.852309838	1	0.9994225	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	205	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	0.9999707	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	316	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	3.07E-08	TAC	synonymous	NA	NA	NA	NA
SSC	chr19	17330062	12A2p6	cell line	sgMsh2	17330062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	214	0	0	NA	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.T298C:p.C100R,Gcnt1:NM_010265:exon3:c.T298C:p.C100R,Gcnt1:NM_173442:exon3:c.T298C:p.C100R"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.689557206	2	0.9976025	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	21276480	12A2p6	cell line	sgMsh2	21276480	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.216	113	0	0	NA	exonic	Zfand5	nonsynonymous SNV	Zfand5:NM_009551:exon2:c.A46G:p.T16A	19qB	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.925120226	1	0.9984229	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	21428623	12A2p6	cell line	sgMsh2	21428623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	120	0	0	NA	exonic	Gda	synonymous SNV	Gda:NM_010266:exon3:c.T240C:p.D80D	19qB	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.766650558	1	0.5906635	TAT	synonymous	NA	NA	NA	NA
SSC	chr19	21815516	12A2p6	cell line	sgMsh2	21815516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	148	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon11:c.C2135T:p.P712L,Cemip2:NM_031997:exon12:c.C2135T:p.P712L"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.492540861	2	0.9999971	CCG	nonsynonymous	ACTC	8	ACTCACTC	NA
SSC	chr19	21847964	12A2p6	cell line	sgMsh2	21847964	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	180	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon21:c.A3625C:p.S1209R,Cemip2:NM_031997:exon22:c.A3625C:p.S1209R"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.826612054	1	0.9693009	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	25673850	12A2p6	cell line	sgMsh2	25673850	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	20	0	0	NA	exonic	Dmrt2	synonymous SNV	Dmrt2:NM_145831:exon2:c.C399A:p.S133S	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.813763162	1	0.8303661	CCT	synonymous	NA	NA	NA	NA
SSC	chr19	26649132	12A2p6	cell line	sgMsh2	26649132	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.146	124	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1355G:p.E452G	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.625312745	2	0.9961731	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	26649134	12A2p6	cell line	sgMsh2	26649134	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.148	124	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1357G:p.R453G	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.633878673	2	0.9945396	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	172	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.740952774	2	0.8306207	CTC	synonymous	NA	NA	NA	NA
SSC	chr19	28905451	12A2p6	cell line	sgMsh2	28905451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	159	0	0	NA	exonic	Slc1a1	nonsynonymous SNV	Slc1a1:NM_009199:exon10:c.T1114A:p.Y372N	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	0.9995783	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	29602644	12A2p6	cell line	sgMsh2	29602644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	188	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon25:c.A3844G:p.I1282V	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.90798837	1	0.9998309	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	30116427	12A2p6	cell line	sgMsh2	30116427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	147	0	0	NA	exonic	Gldc	nonsynonymous SNV	Gldc:NM_138595:exon18:c.A2189G:p.Y730C	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.655293494	2	0.9954191	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	31083935	12A2p6	cell line	sgMsh2	31083935	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	116	0	0	NA	exonic	Cstf2t	synonymous SNV	Cstf2t:NM_031249:exon1:c.C870A:p.S290S	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.582483105	2	0.9988646	CCT	synonymous	NA	NA	NA	NA
SSC	chr19	31917996	12A2p6	cell line	sgMsh2	31917996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	224	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.A478C:p.T160P,A1cf:NM_001365078:exon5:c.A478C:p.T160P"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.9996624	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	31920923	12A2p6	cell line	sgMsh2	31920923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	278	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon6:c.A706G:p.R236G,A1cf:NM_001365078:exon6:c.A706G:p.R236G"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.689557206	2	0.9997437	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	33776763	12A2p6	cell line	sgMsh2	33776763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	190	0	0	NA	exonic	Lipo1	nonsynonymous SNV	Lipo1:NM_001323065:exon9:c.A971G:p.N324S	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.642444602	2	0.9997257	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	33964871	12A2p6	cell line	sgMsh2	33964871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	exonic	Lipf	nonsynonymous SNV	Lipf:NM_026334:exon3:c.A200G:p.K67R	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.848026874	1	0.983524	AAG	nonsynonymous	A	5	AAAAA	NA
SSC	chr19	34495079	12A2p6	cell line	sgMsh2	34495079	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	107	0	0	NA	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon9:c.A941T:p.N314I,Lipa:NM_021460:exon9:c.A941T:p.N314I"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.466843077	2	0.9996305	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	34573176	12A2p6	cell line	sgMsh2	34573176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	245	0	0	NA	exonic	Ifit2	nonsynonymous SNV	"Ifit2:NM_001355262:exon3:c.T115C:p.F39L,Ifit2:NM_008332:exon3:c.T115C:p.F39L"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.775216486	2	0.514787	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	265	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.848026874	NA	NA	CAA	frameshift	C	5	CCCCC	-1
SSC	chr19	34588266	12A2p6	cell line	sgMsh2	34588266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	319	0	0	NA	exonic	Ifit3	stoploss	Ifit3:NM_010501:exon2:c.A1211G:p.X404W	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.265543769	3	1.00E-09	TAG	nonsynonymous	AGCA	8	AGCAAGCA	NA
SSC	chr19	34593964	12A2p6	cell line	sgMsh2	34593964	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.019	906	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G1092T:p.L364F,Ifit1bl1:NM_001110517:exon2:c.G1092T:p.L364F"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.081376316	3	1	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	34594484	12A2p6	cell line	sgMsh2	34594484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	895	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.A572G:p.Y191C,Ifit1bl1:NM_001110517:exon2:c.A572G:p.Y191C"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.274109697	3	1	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	34594605	12A2p6	cell line	sgMsh2	34594605	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	874	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G451T:p.G151C,Ifit1bl1:NM_001110517:exon2:c.G451T:p.G151C"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.278392661	3	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	34620037	12A2p6	cell line	sgMsh2	34620037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	271	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.A178G:p.I60V,Ifit1bl2:NM_053217:exon3:c.A178G:p.I60V"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.753801666	2	0.8975961	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	37982988	12A2p6	cell line	sgMsh2	37982988	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	250	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon9:c.G815T:p.R272M,Myof:NM_001302140:exon9:c.G815T:p.R272M"	19qC2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.453994185	2	0.9999995	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38057860	12A2p6	cell line	sgMsh2	38057860	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	202	0	0	NA	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon2:c.C60A:p.S20R,Cep55:NM_001164362:exon3:c.C60A:p.S20R,Cep55:NM_001360663:exon3:c.C60A:p.S20R,Cep55:NM_028760:exon3:c.C60A:p.S20R"	19qC2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.638161637	2	0.9998885	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38158478	12A2p6	cell line	sgMsh2	38158478	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	178	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon10:c.C1333A:p.L445M,Pde6c:NM_033614:exon10:c.C1333A:p.L445M"	19qC2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.548219393	2	0.9999982	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38400469	12A2p6	cell line	sgMsh2	38400469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	148	0	0	NA	exonic	Slc35g1	nonsynonymous SNV	Slc35g1:NM_175507:exon2:c.T223A:p.L75M	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8327264	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38701977	12A2p6	cell line	sgMsh2	38701977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	110	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon5:c.T2104C:p.F702L	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	2	0.946535046	1	0.9991837	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	161	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.419730473	2	0.9968522	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38719591	12A2p6	cell line	sgMsh2	38719591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	169	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3123A:p.H1041Q	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.698123134	2	0.9814855	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	38945419	12A2p6	cell line	sgMsh2	38945419	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	318	0	0	NA	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon9:c.T683G:p.I228S	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	4.26E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	39093485	12A2p6	cell line	sgMsh2	39093485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	439	0	0	NA	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon9:c.T1454C:p.I485T	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	39638624	12A2p6	cell line	sgMsh2	39638624	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	393	0	0	NA	exonic	Cyp2c67	stopgain	Cyp2c67:NM_001024719:exon5:c.C761A:p.S254X	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.702406098	2	0.9999749	TGA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	40585490	12A2p6	cell line	sgMsh2	40585490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	258	0	0	NA	exonic	Aldh18a1	nonsynonymous SNV	"Aldh18a1:NM_019698:exon3:c.A88C:p.N30H,Aldh18a1:NM_153554:exon3:c.A88C:p.N30H"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.642444602	2	0.9999913	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	40962445	12A2p6	cell line	sgMsh2	40962445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	79	0	0	NA	exonic	Blnk	synonymous SNV	"Blnk:NM_001365054:exon5:c.T261C:p.P87P,Blnk:NM_008528:exon5:c.T261C:p.P87P"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.556785321	2	0.9921163	CAG	synonymous	GGCA	8	GGCAGGCA	NA
SSC	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	216	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.762367594	2	0.6928097	GAC	synonymous	NA	NA	NA	NA
SSC	chr19	41925226	12A2p6	cell line	sgMsh2	41925226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	90	0	0	NA	exonic	Exosc1	nonsynonymous SNV	"Exosc1:NM_001164561:exon4:c.A236G:p.K79R,Exosc1:NM_001320233:exon5:c.A74G:p.K25R,Exosc1:NM_025644:exon6:c.A359G:p.K120R"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.903705406	1	0.9917183	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	41928081	12A2p6	cell line	sgMsh2	41928081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	236	0	0	NA	exonic	Exosc1	synonymous SNV	"Exosc1:NM_001320231:exon4:c.A255G:p.V85V,Exosc1:NM_001320232:exon4:c.A255G:p.V85V,Exosc1:NM_025644:exon4:c.A255G:p.V85V"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.9553031	GTA	synonymous	NA	NA	NA	NA
SSC	chr19	43759909	12A2p6	cell line	sgMsh2	43759909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	145	0	0	NA	exonic	Cutc	nonsynonymous SNV	"Cutc:NM_001113562:exon4:c.C250T:p.R84C,Cutc:NM_025530:exon4:c.C250T:p.R84C"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.82232909	1	0.9455646	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	45006330	12A2p6	cell line	sgMsh2	45006330	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	36	0	0	NA	exonic	Mrpl43	nonsynonymous SNV	Mrpl43:NM_053164:exon1:c.A65G:p.Y22C	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.578200141	2	0.759385	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	114	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.441145293	2	0.9981085	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	72	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.483974933	2	0.9964434	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	46005998	12A2p6	cell line	sgMsh2	46005998	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	198	0	0	NA	exonic	Hps6	synonymous SNV	Hps6:NM_176785:exon1:c.A2373G:p.P791P	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.591049033	2	0.999994	CAC	synonymous	NA	NA	NA	NA
SSC	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	59	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.723820918	1	0.5173124	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	46330185	12A2p6	cell line	sgMsh2	46330185	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	73	0	0	NA	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T905G:p.L302W,Fbxl15:NM_133694:exon4:c.T797G:p.L266W"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.69384017	2	0.7300487	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	230	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.659576458	2	0.9998648	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47075043	12A2p6	cell line	sgMsh2	47075043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	247	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon3:c.A1031G:p.D344G	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9999492	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47103823	12A2p6	cell line	sgMsh2	47103823	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.198	176	0	0	NA	exonic	Pdcd11	synonymous SNV	Pdcd11:NM_011053:exon10:c.T1257C:p.C419C	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.848026874	1	0.9907614	GTA	synonymous	NA	NA	NA	NA
SSC	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	128	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	2	0.955100974	1	0.9997761	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	153	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.513955681	2	0.9999975	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47620870	12A2p6	cell line	sgMsh2	47620870	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	182	0	0	NA	exonic	Slk	nonsynonymous SNV	"Slk:NM_001164639:exon9:c.T2261C:p.V754A,Slk:NM_009289:exon9:c.T2261C:p.V754A"	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.145620776	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	47983668	12A2p6	cell line	sgMsh2	47983668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	86	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon13:c.T2036C:p.L679P	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.65101053	2	0.9351817	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr19	48487395	12A2p6	cell line	sgMsh2	48487395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	229	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon3:c.T692C:p.V231A	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.509672717	2	2.37E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	50225226	12A2p6	cell line	sgMsh2	50225226	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	98	0	0	NA	exonic	Sorcs1	frameshift deletion	"Sorcs1:NM_001252501:exon16:c.2062delG:p.E688Kfs*93,Sorcs1:NM_001290356:exon16:c.2062delG:p.E688Kfs*93,Sorcs1:NM_001360457:exon16:c.2062delG:p.E688Kfs*92,Sorcs1:NM_021377:exon16:c.2062delG:p.E688Kfs*93"	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.813763162	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr19	53625096	12A2p6	cell line	sgMsh2	53625096	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	111	0	0	NA	exonic	Smc3	nonsynonymous SNV	Smc3:NM_007790:exon13:c.T1239G:p.I413M	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.197016344	3	0.999999	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	55241223	12A2p6	cell line	sgMsh2	55241223	G	A	SNV	Mutect2;Vardict	2	0.045	138	0	0	NA	exonic	Gucy2g	nonsynonymous SNV	Gucy2g:NM_001081076:exon1:c.C14T:p.T5I	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.19273338	3	1.64E-08	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	129	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.543936429	2	0.9999151	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	55623900	12A2p6	cell line	sgMsh2	55623900	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	354	0	0	NA	exonic	Vti1a	nonsynonymous SNV	"Vti1a:NM_016862:exon8:c.A644C:p.K215T,Vti1a:NM_001293685:exon9:c.A665C:p.K222T"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.80091427	1	0.9110578	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr19	56327234	12A2p6	cell line	sgMsh2	56327234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	283	0	0	NA	exonic	Nrap	synonymous SNV	"Nrap:NM_001286552:exon36:c.T4140C:p.D1380D,Nrap:NM_198059:exon37:c.T4383C:p.D1461D,Nrap:NM_008733:exon38:c.T4488C:p.D1496D"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.9813174	AAT	synonymous	NA	NA	NA	NA
SSC	chr19	56848901	12A2p6	cell line	sgMsh2	56848901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	145	0	0	NA	exonic	Tdrd1	nonsynonymous SNV	"Tdrd1:NM_001002241:exon12:c.A1556G:p.Q519R,Tdrd1:NM_001002238:exon13:c.A1556G:p.Q519R,Tdrd1:NM_001002240:exon13:c.A1556G:p.Q519R,Tdrd1:NM_031387:exon13:c.A1556G:p.Q519R"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.556785321	2	0.9999585	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	138	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.856592802	1	0.9875907	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	58805445	12A2p6	cell line	sgMsh2	58805445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	135	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon9:c.T983C:p.I328T,Hspa12a:NM_001327998:exon10:c.T1037C:p.I346T"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.706689062	2	0.9234815	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr19	60543015	12A2p6	cell line	sgMsh2	60543015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	205	0	0	NA	exonic	Cacul1	nonsynonymous SNV	"Cacul1:NM_001172096:exon5:c.T815C:p.L272P,Cacul1:NM_001172097:exon5:c.T815C:p.L272P,Cacul1:NM_030197:exon5:c.T815C:p.L272P"	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	0.9986439	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr19	60771096	12A2p6	cell line	sgMsh2	60771096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	216	0	0	NA	exonic	Eif3a	synonymous SNV	Eif3a:NM_010123:exon15:c.T2238C:p.H746H	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.999527	TAT	synonymous	NA	NA	NA	NA
SSC	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	119	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	3502535	12A2p6	cell line	sgMsh2	3502535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	131	0	0	NA	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon4:c.A194T:p.N65I,Hspa14:NM_015765:exon5:c.A335T:p.N112I"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	4994656	12A2p6	cell line	sgMsh2	4994656	T	-	Deletion	Mutect2;Vardict	2	0.058	165	0	0	NA	exonic	Mcm10	frameshift deletion	"Mcm10:NM_001305259:exon16:c.2185delA:p.R729Gfs*7,Mcm10:NM_027290:exon16:c.2185delA:p.R729Gfs*7"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.248411913	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr2	5362084	12A2p6	cell line	sgMsh2	5362084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon3:c.T268G:p.F90V,Camk1d:NM_001290375:exon4:c.T343G:p.F115V,Camk1d:NM_001290376:exon4:c.T319G:p.F107V,Camk1d:NM_177343:exon4:c.T343G:p.F115V"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9986186	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	5961497	12A2p6	cell line	sgMsh2	5961497	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	237	0	0	NA	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon3:c.T927G:p.S309R	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.14990374	3	1	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	6408951	12A2p6	cell line	sgMsh2	6408951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	173	0	0	NA	exonic	Usp6nl	nonsynonymous SNV	"Usp6nl:NM_181399:exon5:c.G287T:p.R96M,Usp6nl:NM_001080548:exon6:c.G218T:p.R73M"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8675989	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	12978397	12A2p6	cell line	sgMsh2	12978397	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	151	0	0	NA	exonic	Pter	frameshift deletion	"Pter:NM_001305436:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_008961:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_001305437:exon3:c.248delT:p.Q84Sfs*1"	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr2	13282909	12A2p6	cell line	sgMsh2	13282909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	205	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon64:c.T10358C:p.L3453S	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	13476167	12A2p6	cell line	sgMsh2	13476167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	77	0	0	NA	exonic	Cubn	synonymous SNV	Cubn:NM_001081084:exon9:c.T876C:p.G292G	2qA1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	AAC	synonymous	NA	NA	NA	NA
SSC	chr2	20850321	12A2p6	cell line	sgMsh2	20850321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	141	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon24:c.C4229A:p.A1410D,Arhgap21:NM_001128084:exon25:c.C4259A:p.A1420D"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9435394	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	135	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999801	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	24758304	12A2p6	cell line	sgMsh2	24758304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	83	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon3:c.G508A:p.D170N,Cacna1b:NM_007579:exon3:c.G508A:p.D170N"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9992638	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9778492	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25201148	12A2p6	cell line	sgMsh2	25201148	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	0	0	NA	exonic	Nelfb	nonsynonymous SNV	"Nelfb:NM_001310157:exon10:c.C1069A:p.L357I,Nelfb:NM_021393:exon11:c.C1528A:p.L510I"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25222364	12A2p6	cell line	sgMsh2	25222364	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	162	0	0	NA	exonic	Tubb4b	nonsynonymous SNV	Tubb4b:NM_146116:exon4:c.G1282A:p.A428T	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9999778	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25231426	12A2p6	cell line	sgMsh2	25231426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	exonic	Slc34a3	frameshift deletion	"Slc34a3:NM_080854:exon8:c.838delG:p.E280Rfs*72,Slc34a3:NM_001362748:exon9:c.658delG:p.E220Rfs*72"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.509672717	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr2	25313489	12A2p6	cell line	sgMsh2	25313489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	32	0	0	NA	exonic	Grin1	nonsynonymous SNV	"Grin1:NM_001177656:exon3:c.A509G:p.D170G,Grin1:NM_001177657:exon3:c.A509G:p.D170G,Grin1:NM_001372558:exon3:c.A509G:p.D170G,Grin1:NM_001372559:exon3:c.A509G:p.D170G,Grin1:NM_001372560:exon3:c.A509G:p.D170G,Grin1:NM_001372561:exon3:c.A509G:p.D170G,Grin1:NM_001372562:exon3:c.A509G:p.D170G,Grin1:NM_008169:exon3:c.A509G:p.D170G"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9752483	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	43	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9883096	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25435255	12A2p6	cell line	sgMsh2	25435255	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	68	0	0	NA	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon8:c.C1263T:p.N421N,Abca2:NM_007379:exon8:c.C1260T:p.N420N"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.646727566	2	0.8703787	ACC	synonymous	NA	NA	NA	NA
SSC	chr2	25438838	12A2p6	cell line	sgMsh2	25438838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	43	0	0	NA	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon19:c.A2793G:p.L931L,Abca2:NM_007379:exon19:c.A2790G:p.L930L"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9883096	TAC	synonymous	NA	NA	NA	NA
SSC	chr2	25493787	12A2p6	cell line	sgMsh2	25493787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	86	0	0	NA	exonic	Lcn12	nonsynonymous SNV	Lcn12:NM_029958:exon1:c.A70G:p.M24V	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.71525499	2	0.6924476	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25706992	12A2p6	cell line	sgMsh2	25706992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	40	0	0	NA	exonic	Bmyc	nonsynonymous SNV	Bmyc:NM_023326:exon1:c.T67C:p.F23L	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9856425	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	25939739	12A2p6	cell line	sgMsh2	25939739	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	108	0	0	NA	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T1972G:p.F658V,Camsap1:NM_001276360:exon12:c.T2005G:p.F669V,Camsap1:NM_001276361:exon12:c.T2032G:p.F678V,Camsap1:NM_001372499:exon12:c.T2005G:p.F669V"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9987657	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	26385535	12A2p6	cell line	sgMsh2	26385535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	140	0	0	NA	exonic	Entr1	nonsynonymous SNV	"Entr1:NM_001085408:exon5:c.T743C:p.V248A,Entr1:NM_001085407:exon6:c.T812C:p.V271A,Entr1:NM_026563:exon7:c.T962C:p.V321A"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.659576458	2	0.992265	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	26435966	12A2p6	cell line	sgMsh2	26435966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	94	0	0	NA	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.A3698C:p.E1233A	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	CTC	nonsynonymous	GCTCAG	12	GCTCAGGCTCAG	NA
SSC	chr2	26467942	12A2p6	cell line	sgMsh2	26467942	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	47	0	0	NA	exonic	Notch1	nonsynonymous SNV	Notch1:NM_008714:exon26:c.C4675A:p.L1559I	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9911183	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	26935351	12A2p6	cell line	sgMsh2	26935351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	71	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon2:c.A53G:p.N18S,Stkld1:NM_001379464:exon2:c.A53G:p.N18S,Stkld1:NM_198628:exon2:c.A29G:p.N10S"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9983086	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	26950091	12A2p6	cell line	sgMsh2	26950091	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	62	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon13:c.C1196T:p.T399I,Stkld1:NM_001379464:exon13:c.C1196T:p.T399I,Stkld1:NM_198628:exon13:c.C1172T:p.T391I"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8562505	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	26973545	12A2p6	cell line	sgMsh2	26973545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	52	0	0	NA	exonic	Adamts13	synonymous SNV	"Adamts13:NM_001001322:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290463:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290464:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290465:exon1:c.G9A:p.Q3Q"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.993706	AGC	synonymous	NA	NA	NA	NA
SSC	chr2	26983866	12A2p6	cell line	sgMsh2	26983866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	79	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon10:c.T1126A:p.C376S,Adamts13:NM_001290463:exon10:c.T1126A:p.C376S,Adamts13:NM_001290464:exon10:c.T1126A:p.C376S,Adamts13:NM_001290465:exon10:c.T1126A:p.C376S"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.8796548	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	27268177	12A2p6	cell line	sgMsh2	27268177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	47	0	0	NA	exonic	Vav2	nonsynonymous SNV	Vav2:NM_009500:exon26:c.A2378G:p.Q793R	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9911183	CTG	nonsynonymous	G	5	GGGGG	NA
SSC	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	79	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9623304	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	29146137	12A2p6	cell line	sgMsh2	29146137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	181	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon10:c.T2633C:p.L878P	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999992	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	29179716	12A2p6	cell line	sgMsh2	29179716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	187	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon26:c.T7532C:p.L2511P	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	29689110	12A2p6	cell line	sgMsh2	29689110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	90	0	0	NA	exonic	Rapgef1	synonymous SNV	"Rapgef1:NM_001039086:exon4:c.A381G:p.S127S,Rapgef1:NM_001362702:exon4:c.A381G:p.S127S,Rapgef1:NM_001039087:exon5:c.A495G:p.S165S,Rapgef1:NM_054050:exon5:c.A495G:p.S165S"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	CAG	synonymous	NA	NA	NA	NA
SSC	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	58	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9632591	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	91	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9995774	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	30350680	12A2p6	cell line	sgMsh2	30350680	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	71	0	0	NA	exonic	Sh3glb2	synonymous SNV	"Sh3glb2:NM_001289709:exon4:c.C372G:p.R124R,Sh3glb2:NM_001289710:exon4:c.C372G:p.R124R,Sh3glb2:NM_001346806:exon4:c.C372G:p.R124R,Sh3glb2:NM_001362888:exon4:c.C372G:p.R124R,Sh3glb2:NM_139302:exon4:c.C372G:p.R124R"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9983086	GGC	synonymous	NA	NA	NA	NA
SSC	chr2	30376735	12A2p6	cell line	sgMsh2	30376735	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	104	0	0	NA	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon8:c.T883G:p.S295A,Miga2:NM_001378906:exon8:c.T883G:p.S295A,Miga2:NM_001378907:exon8:c.T883G:p.S295A,Miga2:NM_001378909:exon8:c.T310G:p.S104A,Miga2:NM_001378911:exon8:c.T310G:p.S104A,Miga2:NM_175392:exon8:c.T883G:p.S295A"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	31912023	12A2p6	cell line	sgMsh2	31912023	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	106	0	0	NA	exonic	Lamc3	nonsynonymous SNV	Lamc3:NM_011836:exon8:c.A1442T:p.H481L	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9989974	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	32096059	12A2p6	cell line	sgMsh2	32096059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	39	0	0	NA	exonic	Plpp7	nonsynonymous SNV	"Plpp7:NM_001355238:exon1:c.A248G:p.N83S,Plpp7:NM_145521:exon1:c.A248G:p.N83S"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9846265	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	162	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999969	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	32578965	12A2p6	cell line	sgMsh2	32578965	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	221	0	0	NA	exonic	Pip5kl1	frameshift deletion	"Pip5kl1:NM_001379020:exon6:c.721delA:p.K242Rfs*27,Pip5kl1:NM_001379021:exon6:c.430delA:p.K145Rfs*27,Pip5kl1:NM_198191:exon6:c.595delA:p.K200Rfs*27"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr2	32708204	12A2p6	cell line	sgMsh2	32708204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	147	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon7:c.A839T:p.K280M	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.9631909	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	63	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	32761588	12A2p6	cell line	sgMsh2	32761588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	47	0	0	NA	exonic	Tor2a	nonsynonymous SNV	"Tor2a:NM_001369225:exon4:c.G686A:p.R229H,Tor2a:NM_001369222:exon5:c.G817A:p.V273I,Tor2a:NM_001369223:exon5:c.G811A:p.V271I,Tor2a:NM_001369224:exon5:c.G818A:p.R273H,Tor2a:NM_152800:exon5:c.G814A:p.V272I"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.890856514	1	0.9521279	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	34812818	12A2p6	cell line	sgMsh2	34812818	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	70	0	0	NA	exonic	Fbxw2	frameshift deletion	"Fbxw2:NM_001164768:exon2:c.682delG:p.A228Rfs*14,Fbxw2:NM_001164769:exon4:c.682delG:p.A228Rfs*14,Fbxw2:NM_001164770:exon4:c.295delG:p.A99Rfs*14,Fbxw2:NM_001164772:exon4:c.682delG:p.A228Rfs*45,Fbxw2:NM_001379115:exon4:c.295delG:p.A99Rfs*14,Fbxw2:NM_001379116:exon4:c.295delG:p.A99Rfs*34,Fbxw2:NM_001379117:exon4:c.682delG:p.A228Rfs*34,Fbxw2:NM_001379118:exon4:c.682delG:p.A228Rfs*14,Fbxw2:NM_013890:exon4:c.682delG:p.A228Rfs*14"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.732386846	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	56	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9952245	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	36859777	12A2p6	cell line	sgMsh2	36859777	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	254	0	0	NA	exonic	Olfr351	synonymous SNV	Olfr351:NM_146942:exon1:c.T570A:p.T190T	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999998	GAG	synonymous	NA	NA	NA	NA
SSC	chr2	37085433	12A2p6	cell line	sgMsh2	37085433	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	272	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T314G:p.M105R	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	2.48E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	37202003	12A2p6	cell line	sgMsh2	37202003	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.241	274	0	0	NA	exonic	Olfr365	frameshift insertion	Olfr365:NM_146662:exon1:c.762dupT:p.G255Wfs*7	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	1
SSC	chr2	37414545	12A2p6	cell line	sgMsh2	37414545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	43	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon3:c.T202C:p.F68L,Rc3h2:NM_001290642:exon3:c.T202C:p.F68L"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.986393	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	37540510	12A2p6	cell line	sgMsh2	37540510	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	75	0	0	NA	exonic	Rabgap1	nonsynonymous SNV	"Rabgap1:NM_001033960:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362956:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362957:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362958:exon16:c.T1858C:p.C620R,Rabgap1:NM_146121:exon16:c.T2062C:p.C688R"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.346920085	3	0.6521384	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	38947312	12A2p6	cell line	sgMsh2	38947312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	84	0	0	NA	exonic	Olfml2a	nonsynonymous SNV	Olfml2a:NM_172854:exon3:c.A466G:p.T156A	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9993132	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	40801423	12A2p6	cell line	sgMsh2	40801423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon66:c.C10383T:p.D3461D	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9259484	AGT	synonymous	NA	NA	NA	NA
SSC	chr2	40875037	12A2p6	cell line	sgMsh2	40875037	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	105	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon55:c.C8776A:p.H2926N	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9992198	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	103	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.710972026	2	0.8033773	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
SSC	chr2	41471003	12A2p6	cell line	sgMsh2	41471003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	70	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon13:c.A2129G:p.Y710C	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9872228	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	41502112	12A2p6	cell line	sgMsh2	41502112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	70	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon10:c.A1439G:p.Y480C	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	84	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	GAT	synonymous	NA	NA	NA	NA
SSC	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	64	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr2	43589396	12A2p6	cell line	sgMsh2	43589396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	62	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon4:c.T301C:p.Y101H,Kynu:NM_001289594:exon4:c.T301C:p.Y101H,Kynu:NM_027552:exon4:c.T301C:p.Y101H"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9968458	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	43679978	12A2p6	cell line	sgMsh2	43679978	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	80	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon13:c.T1271G:p.V424G,Kynu:NM_027552:exon13:c.T1271G:p.V424G"	2qB	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9932477	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	52111938	12A2p6	cell line	sgMsh2	52111938	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	137	0	0	NA	exonic	Rif1	synonymous SNV	"Rif1:NM_001355414:exon30:c.T5403C:p.A1801A,Rif1:NM_001355415:exon30:c.T5382C:p.A1794A,Rif1:NM_175238:exon30:c.T5403C:p.A1801A"	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9873284	CTT	synonymous	CTTCC	10	CTTCCCTTCC	NA
SSC	chr2	52299574	12A2p6	cell line	sgMsh2	52299574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	50	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon25:c.A2303G:p.Y768C	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9927756	GTA	nonsynonymous	TGCTT	12	TGCTTTGCTTTG	NA
SSC	chr2	57305814	12A2p6	cell line	sgMsh2	57305814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	exonic	Gpd2	nonsynonymous SNV	"Gpd2:NM_001145820:exon5:c.A406G:p.M136V,Gpd2:NM_010274:exon5:c.A406G:p.M136V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.792348342	1	0.7999837	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	58147878	12A2p6	cell line	sgMsh2	58147878	A	G	SNV	Mutect2;Vardict	2	0.024	209	0	0	NA	exonic	Cytip	nonsynonymous SNV	Cytip:NM_139200:exon5:c.T473C:p.L158P	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.102791136	3	1	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	59354429	12A2p6	cell line	sgMsh2	59354429	C	-	Deletion	Mutect2;Vardict	2	0.033	191	0	0	NA	exonic	Pkp4	frameshift deletion	"Pkp4:NM_001362991:exon21:c.3416delC:p.P1140Rfs*12,Pkp4:NM_001362992:exon21:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362999:exon21:c.2531delC:p.P845Rfs*12,Pkp4:NM_175464:exon21:c.3425delC:p.P1143Rfs*12,Pkp4:NM_001362990:exon22:c.3548delC:p.P1184Rfs*12,Pkp4:NM_001362997:exon22:c.2531delC:p.P845Rfs*12,Pkp4:NM_026361:exon22:c.3554delC:p.P1186Rfs*12,Pkp4:NM_001362993:exon23:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362994:exon23:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362995:exon23:c.3107delC:p.P1037Rfs*12,Pkp4:NM_001362996:exon23:c.3107delC:p.P1037Rfs*12,Pkp4:NM_001362998:exon23:c.2531delC:p.P845Rfs*12"	2qC1.1	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.141337812	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC	chr2	62705952	12A2p6	cell line	sgMsh2	62705952	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	87	0	0	NA	exonic	Kcnh7	synonymous SNV	Kcnh7:NM_133207:exon15:c.C3285A:p.S1095S	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.890856514	1	0.9865929	TGG	synonymous	NA	NA	NA	NA
SSC	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	113	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.809480198	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
SSC	chr2	63980530	12A2p6	cell line	sgMsh2	63980530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	88	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A395T:p.K132I,Fign:NM_001267846:exon4:c.A362T:p.K121I,Fign:NM_001267847:exon4:c.A362T:p.K121I"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.943244	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	65460685	12A2p6	cell line	sgMsh2	65460685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	145	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon27:c.A5863G:p.T1955A,Scn3a:NM_001355167:exon27:c.A5812G:p.T1938A,Scn3a:NM_001355168:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355169:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355170:exon27:c.A5716G:p.T1906A,Scn3a:NM_001355171:exon27:c.A3958G:p.T1320A,Scn3a:NM_018732:exon27:c.A5716G:p.T1906A"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999794	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	134	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999786	GTT	synonymous	NA	NA	NA	NA
SSC	chr2	66093613	12A2p6	cell line	sgMsh2	66093613	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	144	0	0	NA	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon7:c.T1310G:p.V437G	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999893	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	106	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr2	66757300	12A2p6	cell line	sgMsh2	66757300	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	162	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon2:c.C58T:p.L20F	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9763152	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	67184585	12A2p6	cell line	sgMsh2	67184585	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	85	0	0	NA	exonic	Gm1322	nonsynonymous SNV	Gm1322:NM_001033477:exon2:c.A149T:p.N50I	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993592	AAC	nonsynonymous	CTTG	8	CTTGCTTG	NA
SSC	chr2	67512510	12A2p6	cell line	sgMsh2	67512510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	197	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.A5094G:p.L1698L,Xirp2:NM_001083919:exon7:c.A5094G:p.L1698L"	2qC1.3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9999907	TAA	synonymous	NA	NA	NA	NA
SSC	chr2	69284628	12A2p6	cell line	sgMsh2	69284628	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	117	0	0	NA	exonic	Abcb11	nonsynonymous SNV	"Abcb11:NM_021022:exon16:c.G1973A:p.S658N,Abcb11:NM_001363492:exon17:c.G1973A:p.S658N"	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9963764	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	160	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999965	TAT	synonymous	NA	NA	NA	NA
SSC	chr2	69483430	12A2p6	cell line	sgMsh2	69483430	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	161	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon39:c.A6956C:p.D2319A	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.646727566	2	0.9984925	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	69796061	12A2p6	cell line	sgMsh2	69796061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	203	0	0	NA	exonic	Phospho2	nonsynonymous SNV	Phospho2:NM_028521:exon4:c.T560C:p.V187A	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	70000509	12A2p6	cell line	sgMsh2	70000509	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	110	0	0	NA	exonic	Ubr3	synonymous SNV	"Ubr3:NM_001303033:exon30:c.T4431C:p.G1477G,Ubr3:NM_177783:exon30:c.T4419C:p.G1473G"	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	GTG	synonymous	NA	NA	NA	NA
SSC	chr2	71343994	12A2p6	cell line	sgMsh2	71343994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	90	0	0	NA	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon3:c.T105C:p.T35T	2qC2	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	GAG	synonymous	NA	NA	NA	NA
SSC	chr2	73580275	12A2p6	cell line	sgMsh2	73580275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	84	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon1:c.A13C:p.T5P	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.805197234	1	0.8558438	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	23	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	2	1	1	0.9547465	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76356153	12A2p6	cell line	sgMsh2	76356153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	80	0	0	NA	exonic	Cyct	synonymous SNV	Cyct:NM_009989:exon3:c.T96C:p.N32N	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9880513	GAT	synonymous	NA	NA	NA	NA
SSC	chr2	76555915	12A2p6	cell line	sgMsh2	76555915	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	165	0	0	NA	exonic	Osbpl6	nonsynonymous SNV	"Osbpl6:NM_145525:exon11:c.A920C:p.K307T,Osbpl6:NM_001290733:exon12:c.A920C:p.K307T"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.753801666	2	0.6799201	AAA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
SSC	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997574	AGC	synonymous	NA	NA	NA	NA
SSC	chr2	76630499	12A2p6	cell line	sgMsh2	76630499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	110	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon8:c.A854G:p.H285R	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9997305	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76791109	12A2p6	cell line	sgMsh2	76791109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	175	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon90:c.A22005G:p.P7335P,Ttn:NM_011652:exon211:c.A41748G:p.P13916P,Ttn:NM_001385708:exon248:c.A47580G:p.P15860P"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999988	TTG	synonymous	NA	NA	NA	NA
SSC	chr2	76849122	12A2p6	cell line	sgMsh2	76849122	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	117	0	0	NA	exonic	Ttn	nonsynonymous SNV	Ttn:NM_011652:exon137:c.A29681G:p.N9894S	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76878718	12A2p6	cell line	sgMsh2	76878718	T	C	SNV	Mutect2;Vardict	2	0.039	136	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon91:c.A23534G:p.N7845S,Ttn:NM_001385708:exon93:c.A26591G:p.N8864S"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.167035596	3	2.55E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76880202	12A2p6	cell line	sgMsh2	76880202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	170	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon89:c.A22792G:p.T7598A,Ttn:NM_001385708:exon91:c.A25849G:p.T8617A"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999982	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76894853	12A2p6	cell line	sgMsh2	76894853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	145	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon65:c.T16050C:p.D5350D,Ttn:NM_001385708:exon67:c.T19071C:p.D6357D"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.99999	AAT	synonymous	NA	NA	NA	NA
SSC	chr2	76896383	12A2p6	cell line	sgMsh2	76896383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	149	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon61:c.T15091C:p.Y5031H,Ttn:NM_001385708:exon63:c.T18112C:p.Y6038H"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999871	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	96	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.996661	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	78301701	12A2p6	cell line	sgMsh2	78301701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	144	0	0	NA	exonic	Gm14461	nonsynonymous SNV	Gm14461:NM_177843:exon6:c.T10C:p.W4R	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9752658	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	158	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.999996	TAT	synonymous	NA	NA	NA	NA
SSC	chr2	79644718	12A2p6	cell line	sgMsh2	79644718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	68	0	0	NA	exonic	Itprid2	synonymous SNV	Itprid2:NM_080558:exon8:c.T1020C:p.P340P	2qC3	chr2-3197272-82054155	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	CTA	synonymous	NA	NA	NA	NA
SSC	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	132	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.586766069	2	0.9995586	CTA	synonymous	NA	NA	NA	NA
SSC	chr2	82256428	12A2p6	cell line	sgMsh2	82256428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	219	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon4:c.C600T:p.S200S	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.818046126	1	0.9628468	GCC	synonymous	NA	NA	NA	NA
SSC	chr2	83007483	12A2p6	cell line	sgMsh2	83007483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	187	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon22:c.A20785G:p.I6929V	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.406881581	2	0.9909619	TAT	nonsynonymous	CTAT	8	CTATCTAT	NA
SSC	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	248	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.86515873	1	0.9994022	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	83915312	12A2p6	cell line	sgMsh2	83915312	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	400	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1781T:p.N594I	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.848026874	1	0.9998456	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	83915943	12A2p6	cell line	sgMsh2	83915943	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	242	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1150G:p.I384V	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.680991278	2	0.9995506	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	84691950	12A2p6	cell line	sgMsh2	84691950	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	78	0	0	NA	exonic	Zdhhc5	synonymous SNV	Zdhhc5:NM_144887:exon9:c.T945C:p.P315P	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.222714129	3	0.9996131	GAG	synonymous	AGG	15	AGGAGGAGGTGGAGG	NA
SSC	chr2	84982608	12A2p6	cell line	sgMsh2	84982608	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	62	0	0	NA	exonic	Prg2	nonsynonymous SNV	Prg2:NM_008920:exon4:c.A389G:p.Y130C	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.286958589	3	0.9538919	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	85035189	12A2p6	cell line	sgMsh2	85035189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	120	0	0	NA	exonic	P2rx3	synonymous SNV	P2rx3:NM_145526:exon1:c.C111T:p.Y37Y	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.638161637	2	0.9919755	AGT	synonymous	NA	NA	NA	NA
SSC	chr2	85579489	12A2p6	cell line	sgMsh2	85579489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	486	0	0	NA	exonic	Olfr996	synonymous SNV	Olfr996:NM_146437:exon1:c.T249C:p.C83C	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.745235738	2	0.9984146	GTG	synonymous	NA	NA	NA	NA
SSC	chr2	85608517	12A2p6	cell line	sgMsh2	85608517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	466	0	0	NA	exonic	Olfr1000	nonsynonymous SNV	Olfr1000:NM_001011695:exon1:c.T392C:p.L131P	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8734728	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	85840993	12A2p6	cell line	sgMsh2	85840993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	199	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A797G:p.Y266C	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.680991278	2	0.9977158	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	85951228	12A2p6	cell line	sgMsh2	85951228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	324	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T164C:p.L55P	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8564393	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86160070	12A2p6	cell line	sgMsh2	86160070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	292	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A299G:p.Q100R	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86162944	12A2p6	cell line	sgMsh2	86162944	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	136	0	0	NA	exonic	Olfr1043	nonsynonymous SNV	Olfr1043:NM_146577:exon1:c.G4A:p.A2T	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	0.9976357	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86198521	12A2p6	cell line	sgMsh2	86198521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	477	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.T230C:p.I77T	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.852309838	1	0.999981	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86347406	12A2p6	cell line	sgMsh2	86347406	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	307	0	0	NA	exonic	Olfr1055	nonsynonymous SNV	"Olfr1055:NM_001310551:exon1:c.A359G:p.Y120C,Olfr1055:NM_147021:exon1:c.A359G:p.Y120C"	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.608180889	2	2.19E-08	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	418	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.856592802	1	0.9999667	AAA	synonymous	NA	NA	NA	NA
SSC	chr2	86445613	12A2p6	cell line	sgMsh2	86445613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	392	0	0	NA	exonic	Olfr1065	nonsynonymous SNV	Olfr1065:NM_146408:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	2	1.06E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86538215	12A2p6	cell line	sgMsh2	86538215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	298	0	0	NA	exonic	Olfr1079	synonymous SNV	Olfr1079:NM_146407:exon1:c.T699C:p.A233A	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.595331997	2	1.11E-08	CAG	synonymous	NA	NA	NA	NA
SSC	chr2	86554009	12A2p6	cell line	sgMsh2	86554009	T	G	SNV	Mutect2;MuSe;Vardict	3	0.083	279	0	0	NA	exonic	Olfr1080	synonymous SNV	Olfr1080:NM_146409:exon2:c.A114C:p.S38S	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.355486013	3	0.9857405	CTG	synonymous	NA	NA	NA	NA
SSC	chr2	86594176	12A2p6	cell line	sgMsh2	86594176	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	491	0	0	NA	exonic	Olfr1082	synonymous SNV	Olfr1082:NM_207674:exon2:c.C651A:p.S217S	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	1.89E-08	AGG	synonymous	NA	NA	NA	NA
SSC	chr2	86785904	12A2p6	cell line	sgMsh2	86785904	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	351	0	0	NA	exonic	Olfr1093	nonsynonymous SNV	"Olfr1093:NM_001368206:exon2:c.T173G:p.V58G,Olfr1093:NM_146366:exon3:c.T173G:p.V58G"	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	2	1.81E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	86978375	12A2p6	cell line	sgMsh2	86978375	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	295	0	0	NA	exonic	Olfr1100	nonsynonymous SNV	Olfr1100:NM_146594:exon1:c.C420A:p.F140L	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.852309838	1	0.9993103	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87002441	12A2p6	cell line	sgMsh2	87002441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	439	0	0	NA	exonic	Olfr1102	synonymous SNV	Olfr1102:NM_207154:exon1:c.T471C:p.I157I	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.723820918	2	0.9998555	TTA	synonymous	NA	NA	NA	NA
SSC	chr2	87071227	12A2p6	cell line	sgMsh2	87071227	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	220	0	0	NA	exonic	Olfr1107	nonsynonymous SNV	Olfr1107:NM_146844:exon1:c.G906T:p.K302N	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.372617869	3	0.5681113	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	218	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.496823825	2	3.72E-09	TAG	synonymous	NA	NA	NA	NA
SSC	chr2	87213354	12A2p6	cell line	sgMsh2	87213354	A	G	SNV	Mutect2;Vardict	2	0.035	527	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.A461G:p.K154R	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.14990374	3	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87371819	12A2p6	cell line	sgMsh2	87371819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	309	0	0	NA	exonic	Olfr1121	nonsynonymous SNV	Olfr1121:NM_146348:exon1:c.A286G:p.R96G	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.9885554	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87435310	12A2p6	cell line	sgMsh2	87435310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	252	0	0	NA	exonic	Olfr1124	synonymous SNV	Olfr1124:NM_147028:exon1:c.T822C:p.G274G	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.655293494	2	0.9999651	GTG	synonymous	NA	NA	NA	NA
SSC	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	353	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.496823825	2	1.00E-09	AGG	synonymous	NA	NA	NA	NA
SSC	chr2	87645748	12A2p6	cell line	sgMsh2	87645748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	434	0	0	NA	exonic	Olfr1133	nonsynonymous SNV	Olfr1133:NM_146351:exon1:c.T374C:p.V125A	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.603897925	2	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.186	474	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.796631306	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC	chr2	87783116	12A2p6	cell line	sgMsh2	87783116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	344	0	0	NA	exonic	Olfr152	nonsynonymous SNV	Olfr152:NM_146646:exon1:c.C581T:p.T194M	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	2.58E-08	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	432	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.642444602	2	2.25E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	364	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.766650558	2	0.8631737	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88149893	12A2p6	cell line	sgMsh2	88149893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	450	0	0	NA	exonic	Olfr1167	nonsynonymous SNV	Olfr1167:NM_146294:exon1:c.T125C:p.M42T	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.830895018	1	0.9991751	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	564	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.753801666	2	0.9977367	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	434	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.805197234	1	0.95887	CTG	synonymous	NA	NA	NA	NA
SSC	chr2	88391284	12A2p6	cell line	sgMsh2	88391284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	254	0	0	NA	exonic	Olfr1178	synonymous SNV	Olfr1178:NM_001011868:exon1:c.C36T:p.L12L	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.543936429	2	3.36E-09	TCC	synonymous	NA	NA	NA	NA
SSC	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	226	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.543936429	2	2.57E-08	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
SSC	chr2	88423997	12A2p6	cell line	sgMsh2	88423997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	346	0	0	NA	exonic	Olfr1181	synonymous SNV	Olfr1181:NM_001011816:exon1:c.A27G:p.E9E	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.999998	ATT	synonymous	NA	NA	NA	NA
SSC	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	248	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	0.9999976	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88591937	12A2p6	cell line	sgMsh2	88591937	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	308	0	0	NA	exonic	Olfr1189	synonymous SNV	Olfr1189:NM_146772:exon1:c.G132T:p.V44V	2qD	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.411164545	2	0.9996061	TGG	synonymous	NA	NA	NA	NA
SSC	chr2	88767458	12A2p6	cell line	sgMsh2	88767458	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	388	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.A856T:p.T286S	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	2	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88794555	12A2p6	cell line	sgMsh2	88794555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	379	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.T172C:p.Y58H	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	2	0.9982453	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88852682	12A2p6	cell line	sgMsh2	88852682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	518	0	0	NA	exonic	Olfr1204	nonsynonymous SNV	Olfr1204:NM_146463:exon1:c.T731C:p.V244A	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.659576458	2	1.31E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88865422	12A2p6	cell line	sgMsh2	88865422	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.147	412	0	0	NA	exonic	Olfr1206	nonsynonymous SNV	Olfr1206:NM_001001810:exon1:c.T816G:p.F272L	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	1.58E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	88865425	12A2p6	cell line	sgMsh2	88865425	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.146	417	0	0	NA	exonic	Olfr1206	synonymous SNV	Olfr1206:NM_001001810:exon1:c.T819C:p.Y273Y	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.625312745	2	1.24E-09	ATA	synonymous	NA	NA	NA	NA
SSC	chr2	88896946	12A2p6	cell line	sgMsh2	88896946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	328	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.T650C:p.I217T	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.775216486	2	0.6390907	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
SSC	chr2	88909930	12A2p6	cell line	sgMsh2	88909930	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	449	0	0	NA	exonic	Olfr1209	synonymous SNV	Olfr1209:NM_146461:exon1:c.T462G:p.S154S	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.749518702	2	0.9945	AAG	synonymous	NA	NA	NA	NA
SSC	chr2	89013584	12A2p6	cell line	sgMsh2	89013584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	588	0	0	NA	exonic	Olfr1216	nonsynonymous SNV	Olfr1216:NM_146893:exon1:c.T479C:p.I160T	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.702406098	2	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	89296493	12A2p6	cell line	sgMsh2	89296493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	234	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.C776A:p.P259H	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.556785321	2	3.57E-08	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	89296783	12A2p6	cell line	sgMsh2	89296783	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	241	0	0	NA	exonic	Olfr1230	stopgain	Olfr1230:NM_146789:exon1:c.T486A:p.Y162X	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.826612054	1	0.9841705	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	261	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9996811	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	89325960	12A2p6	cell line	sgMsh2	89325960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	203	0	0	NA	exonic	Olfr1232	synonymous SNV	Olfr1232:NM_146323:exon1:c.C219A:p.S73S	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.689557206	2	0.9964817	AGG	synonymous	NA	NA	NA	NA
SSC	chr2	89340100	12A2p6	cell line	sgMsh2	89340100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	321	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.T201C:p.Y67Y	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.608180889	2	9.74E-09	AAT	synonymous	NA	NA	NA	NA
SSC	chr2	89362725	12A2p6	cell line	sgMsh2	89362725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	230	0	0	NA	exonic	Olfr1234	synonymous SNV	Olfr1234:NM_146973:exon1:c.T703C:p.L235L	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.69384017	2	0.998091	AAA	synonymous	NA	NA	NA	NA
SSC	chr2	89363319	12A2p6	cell line	sgMsh2	89363319	C	T	SNV	Mutect2;Vardict	2	0.033	156	0	0	NA	exonic	Olfr1234	nonsynonymous SNV	Olfr1234:NM_146973:exon1:c.G109A:p.V37I	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.141337812	3	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	89977882	12A2p6	cell line	sgMsh2	89977882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	286	0	0	NA	exonic	Olfr1260	nonsynonymous SNV	Olfr1260:NM_146981:exon1:c.C103T:p.L35F	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.582483105	2	7.54E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	90037444	12A2p6	cell line	sgMsh2	90037444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	597	0	0	NA	exonic	Olfr1265	nonsynonymous SNV	Olfr1265:NM_146343:exon1:c.A524G:p.Y175C	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	90052240	12A2p6	cell line	sgMsh2	90052240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	0	0	NA	exonic	Olfr140	nonsynonymous SNV	Olfr140:NM_020515:exon1:c.T83C:p.L28P	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9986539	AAG	nonsynonymous	A	5	AAAAA	NA
SSC	chr2	90149288	12A2p6	cell line	sgMsh2	90149288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	478	0	0	NA	exonic	Olfr1270	synonymous SNV	Olfr1270:NM_146985:exon1:c.C717A:p.A239A	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.663859422	2	4.78E-09	AGG	synonymous	NA	NA	NA	NA
SSC	chr2	90448145	12A2p6	cell line	sgMsh2	90448145	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.155	40	0	0	NA	exonic	Ptprj	nonsynonymous SNV	"Ptprj:NM_001135657:exon18:c.T2903C:p.L968P,Ptprj:NM_008982:exon18:c.T2846C:p.L949P"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.663859422	2	0.5723498	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	90721339	12A2p6	cell line	sgMsh2	90721339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	128	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon29:c.T3337C:p.S1113P	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.501106789	2	0.9999818	CTC	nonsynonymous	CAGC	9	CAGCCAGCC	NA
SSC	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	260	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	2	1	1	4.41E-09	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	91190884	12A2p6	cell line	sgMsh2	91190884	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	108	0	0	NA	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon5:c.A557C:p.Q186P,Nr1h3:NM_001355279:exon5:c.A557C:p.Q186P,Nr1h3:NM_013839:exon5:c.A557C:p.Q186P"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.518238645	2	0.9998002	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	91212313	12A2p6	cell line	sgMsh2	91212313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	271	0	0	NA	exonic	Ddb2	nonsynonymous SNV	"Ddb2:NM_001362705:exon5:c.A634G:p.N212D,Ddb2:NM_028119:exon9:c.A1201G:p.N401D"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.9999535	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.595331997	2	0.9999926	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	91480474	12A2p6	cell line	sgMsh2	91480474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	89	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon14:c.A1859G:p.H620R	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.852309838	1	0.9612262	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	91498361	12A2p6	cell line	sgMsh2	91498361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	196	0	0	NA	exonic	Lrp4	synonymous SNV	Lrp4:NM_172668:exon31:c.T4605C:p.H1535H	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.860875766	1	0.997235	ATC	synonymous	NA	NA	NA	NA
SSC	chr2	91568226	12A2p6	cell line	sgMsh2	91568226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	158	0	0	NA	exonic	Ckap5	synonymous SNV	"Ckap5:NM_029437:exon13:c.A1740G:p.K580K,Ckap5:NM_001165989:exon14:c.A1740G:p.K580K"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8341537	AAG	synonymous	NA	NA	NA	NA
SSC	chr2	91572397	12A2p6	cell line	sgMsh2	91572397	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	164	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon16:c.A2018C:p.N673T,Ckap5:NM_001165989:exon17:c.A2018C:p.N673T"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.732386846	2	0.8722289	AAT	nonsynonymous	T	5	TTTTT	NA
SSC	chr2	93813690	12A2p6	cell line	sgMsh2	93813690	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.155	211	0	0	NA	exonic	Ext2	frameshift insertion	"Ext2:NM_001355076:exon2:c.244dupG:p.D82Gfs*4,Ext2:NM_010163:exon2:c.244dupG:p.D82Gfs*3,Ext2:NM_001355075:exon3:c.289dupG:p.D97Gfs*3"	2qE1	chr2-82235500-94430128	6	4	2	0.96	4.11164545	NA	1	0.663859422	NA	NA	ATC	frameshift	C	5	CCCCC	1
SSC	chr2	97630410	12A2p6	cell line	sgMsh2	97630410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	116	0	0	NA	exonic	Lrrc4c	synonymous SNV	"Lrrc4c:NM_001289744:exon2:c.G1380A:p.E460E,Lrrc4c:NM_178725:exon3:c.G1380A:p.E460E,Lrrc4c:NM_001363049:exon4:c.G1380A:p.E460E,Lrrc4c:NM_001289743:exon7:c.G1380A:p.E460E,Lrrc4c:NM_001289742:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363048:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363047:exon9:c.G1380A:p.E460E"	2qE1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9680026	AGA	synonymous	NA	NA	NA	NA
SSC	chr2	101696760	12A2p6	cell line	sgMsh2	101696760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	149	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.G854A:p.R285H,Traf6:NM_009424:exon8:c.G854A:p.R285H"	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999925	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	293	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	104430235	12A2p6	cell line	sgMsh2	104430235	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	124	0	0	NA	exonic	Hipk3	nonsynonymous SNV	"Hipk3:NM_001145824:exon16:c.T3196C:p.F1066L,Hipk3:NM_010434:exon16:c.T3199C:p.F1067L"	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.214148201	3	0.9999992	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	104685452	12A2p6	cell line	sgMsh2	104685452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	156	0	0	NA	exonic	Tcp11l1	synonymous SNV	Tcp11l1:NM_177190:exon8:c.T1065C:p.S355S	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	TAC	synonymous	NA	NA	NA	NA
SSC	chr2	104786979	12A2p6	cell line	sgMsh2	104786979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	180	0	0	NA	exonic	Qser1	nonsynonymous SNV	Qser1:NM_001123327:exon3:c.T3217C:p.Y1073H	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.706689062	2	0.9782282	TAC	nonsynonymous	TACA	8	TACATACA	NA
SSC	chr2	105387932	12A2p6	cell line	sgMsh2	105387932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	156	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon6:c.A965G:p.H322R	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	ATG	nonsynonymous	T	5	TTTTT	NA
SSC	chr2	106372356	12A2p6	cell line	sgMsh2	106372356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	82	0	0	NA	exonic	Dcdc5	nonsynonymous SNV	Dcdc5:NM_177844:exon18:c.A1666G:p.R556G	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.7646911	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	110362795	12A2p6	cell line	sgMsh2	110362795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	71	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A1G:p.M1V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9983086	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	111091876	12A2p6	cell line	sgMsh2	111091876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	119	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon58:c.T4194C:p.D1398D	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	CAT	synonymous	NA	NA	NA	NA
SSC	chr2	111139008	12A2p6	cell line	sgMsh2	111139008	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	140	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon35:c.T2632A:p.L878I	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999859	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	111270074	12A2p6	cell line	sgMsh2	111270074	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	172	0	0	NA	exonic	Olfr1277	nonsynonymous SNV	Olfr1277:NM_146396:exon1:c.A292C:p.M98L	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999985	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	111292879	12A2p6	cell line	sgMsh2	111292879	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	329	0	0	NA	exonic	Olfr1278	nonsynonymous SNV	Olfr1278:NM_146394:exon1:c.G610T:p.G204W	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.235563021	3	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	179	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	0.9999989	AAT	synonymous	NA	NA	NA	NA
SSC	chr2	111780515	12A2p6	cell line	sgMsh2	111780515	A	G	SNV	Mutect2;Vardict	2	0.02	462	0	0	NA	exonic	Olfr1302	nonsynonymous SNV	Olfr1302:NM_146889:exon1:c.A203G:p.N68S	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.08565928	3	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	347	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	1.13E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	112042552	12A2p6	cell line	sgMsh2	112042552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	471	0	0	NA	exonic	Olfr1312	nonsynonymous SNV	Olfr1312:NM_146362:exon1:c.T479C:p.V160A	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	112142466	12A2p6	cell line	sgMsh2	112142466	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	350	0	0	NA	exonic	Olfr1317	nonsynonymous SNV	Olfr1317:NM_146448:exon1:c.A520C:p.M174L	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.67242535	2	0.9999972	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	112156184	12A2p6	cell line	sgMsh2	112156184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	291	0	0	NA	exonic	Olfr1318	nonsynonymous SNV	Olfr1318:NM_001011802:exon1:c.A232G:p.T78A	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	1.40E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	112825831	12A2p6	cell line	sgMsh2	112825831	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	123	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon38:c.A5819T:p.E1940V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.770933522	1	0.6263689	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	88	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9994796	AAC	nonsynonymous	A	5	AAAAA	NA
SSC	chr2	113289743	12A2p6	cell line	sgMsh2	113289743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	exonic	Tmco5b	synonymous SNV	Tmco5b:NM_029232:exon6:c.A363G:p.K121K	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9677794	AAG	synonymous	NA	NA	NA	NA
SSC	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	124	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999572	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	115581958	12A2p6	cell line	sgMsh2	115581958	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	73	0	0	NA	exonic	BC052040	nonsynonymous SNV	"BC052040:NM_001145898:exon1:c.T74G:p.L25R,BC052040:NM_207264:exon1:c.T74G:p.L25R"	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	159	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999962	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	118205158	12A2p6	cell line	sgMsh2	118205158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	281	0	0	NA	exonic	Fsip1	nonsynonymous SNV	Fsip1:NM_027759:exon11:c.T1235C:p.M412T	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	1.79E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	118791987	12A2p6	cell line	sgMsh2	118791987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	97	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3199C:p.C1067R	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997213	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	118	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
SSC	chr2	119330981	12A2p6	cell line	sgMsh2	119330981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	86	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon8:c.A1043G:p.H348R	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	26	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9629374	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
SSC	chr2	119921746	12A2p6	cell line	sgMsh2	119921746	T	-	Deletion	Mutect2;Strelka2	2	0.19	146	0	0	NA	exonic	Mga	frameshift deletion	"Mga:NM_001164274:exon7:c.2320delT:p.P775Lfs*38,Mga:NM_013720:exon7:c.2320delT:p.P775Lfs*38"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.813763162	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr2	119921751	12A2p6	cell line	sgMsh2	119921751	T	C	SNV	Mutect2;Strelka2	2	0.192	150	0	0	NA	exonic	Mga	synonymous SNV	"Mga:NM_001164274:exon7:c.T2325C:p.P775P,Mga:NM_013720:exon7:c.T2325C:p.P775P"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9479998	CTT	synonymous	NA	NA	NA	NA
SSC	chr2	120021181	12A2p6	cell line	sgMsh2	120021181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	52	0	0	NA	exonic	Mapkbp1	nonsynonymous SNV	"Mapkbp1:NM_011941:exon22:c.T2585C:p.V862A,Mapkbp1:NM_001355293:exon23:c.T2603C:p.V868A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7697428	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120030127	12A2p6	cell line	sgMsh2	120030127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	210	0	0	NA	exonic	Jmjd7	stopgain	Jmjd7:NM_001114637:exon2:c.G134A:p.W45X	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120191292	12A2p6	cell line	sgMsh2	120191292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	67	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.A334G:p.T112A,Pla2g4e:NM_001363090:exon4:c.A67G:p.T23A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120320682	12A2p6	cell line	sgMsh2	120320682	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	58	0	0	NA	exonic	Vps39	frameshift deletion	"Vps39:NM_001363053:exon22:c.2361delT:p.K788Rfs*20,Vps39:NM_001363054:exon22:c.2058delT:p.K687Rfs*20,Vps39:NM_178851:exon23:c.2430delT:p.K811Rfs*20,Vps39:NM_147153:exon24:c.2463delT:p.K822Rfs*20"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC	chr2	120406277	12A2p6	cell line	sgMsh2	120406277	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	100	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon2:c.A41T:p.E14V	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.719537954	2	0.7381217	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120430999	12A2p6	cell line	sgMsh2	120430999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	96	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon10:c.A959C:p.D320A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120524035	12A2p6	cell line	sgMsh2	120524035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	140	0	0	NA	exonic	Zfp106	synonymous SNV	Zfp106:NM_011743:exon11:c.A4323G:p.V1441V	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999859	CTA	synonymous	NA	NA	NA	NA
SSC	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120748632	12A2p6	cell line	sgMsh2	120748632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	139	0	0	NA	exonic	Ttbk2	nonsynonymous SNV	"Ttbk2:NM_001024857:exon13:c.G1801T:p.G601C,Ttbk2:NM_001024856:exon14:c.G1801T:p.G601C,Ttbk2:NM_080788:exon14:c.G2008T:p.G670C"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999849	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120977781	12A2p6	cell line	sgMsh2	120977781	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	82	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon2:c.T263G:p.I88S	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.999211	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	120986661	12A2p6	cell line	sgMsh2	120986661	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	141	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon6:c.A697G:p.T233A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.9175884	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	74	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9851229	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	121307586	12A2p6	cell line	sgMsh2	121307586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	116	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon5:c.A8026G:p.S2676G,Map1a:NM_032393:exon6:c.A8740G:p.S2914G"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	121432334	12A2p6	cell line	sgMsh2	121432334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	147	0	0	NA	exonic	Pdia3	synonymous SNV	Pdia3:NM_007952:exon7:c.A780G:p.L260L	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999913	TAC	synonymous	NA	NA	NA	NA
SSC	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	126594161	12A2p6	cell line	sgMsh2	126594161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	113	0	0	NA	exonic	Hdc	nonsynonymous SNV	Hdc:NM_008230:exon12:c.T1789C:p.S597P	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	126748220	12A2p6	cell line	sgMsh2	126748220	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	195	0	0	NA	exonic	Usp8	nonsynonymous SNV	"Usp8:NM_001252580:exon13:c.A1925G:p.Y642C,Usp8:NM_019729:exon13:c.A1892G:p.Y631C"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.188450416	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	119	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	127245750	12A2p6	cell line	sgMsh2	127245750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	132	0	0	NA	exonic	Ciao1	nonsynonymous SNV	Ciao1:NM_025296:exon5:c.C664T:p.R222C	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999524	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	82	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9969453	TTA	synonymous	NA	NA	NA	NA
SSC	chr2	127656060	12A2p6	cell line	sgMsh2	127656060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	44	0	0	NA	exonic	Mal	nonsynonymous SNV	"Mal:NM_001171187:exon1:c.T74C:p.L25S,Mal:NM_010762:exon1:c.T74C:p.L25S"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9634626	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	128685915	12A2p6	cell line	sgMsh2	128685915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	167	0	0	NA	exonic	Anapc1	nonsynonymous SNV	Anapc1:NM_008569:exon2:c.A122G:p.Q41R	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999978	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	129199995	12A2p6	cell line	sgMsh2	129199995	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	116	0	0	NA	exonic	Slc20a1	nonsynonymous SNV	"Slc20a1:NM_001159593:exon2:c.T277A:p.L93M,Slc20a1:NM_015747:exon2:c.T277A:p.L93M"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	102	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	GTA	synonymous	NA	NA	NA	NA
SSC	chr2	129285010	12A2p6	cell line	sgMsh2	129285010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	178	0	0	NA	exonic	Ckap2l	nonsynonymous SNV	Ckap2l:NM_181589:exon4:c.A1247C:p.D416A	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9967858	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	129460444	12A2p6	cell line	sgMsh2	129460444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	179	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon5:c.A1227G:p.V409V,F830045P16Rik:NM_177653:exon5:c.A1227G:p.V409V"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999991	TTA	synonymous	NA	NA	NA	NA
SSC	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.321	127	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	130047744	12A2p6	cell line	sgMsh2	130047744	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	40	0	0	NA	exonic	Tgm3	frameshift deletion	Tgm3:NM_009374:exon12:c.1857delC:p.L621Wfs*4	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.852309838	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr2	130101276	12A2p6	cell line	sgMsh2	130101276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	211	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.T753C:p.T251T	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	CTC	synonymous	NA	NA	NA	NA
SSC	chr2	130405550	12A2p6	cell line	sgMsh2	130405550	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.287	32	0	0	NA	exonic	1700020A23Rik	frameshift insertion	"1700020A23Rik:NM_001163483:exon1:c.6dupC:p.W5Lfs*44,1700020A23Rik:NM_029375:exon2:c.6dupC:p.W5Lfs*44"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
SSC	chr2	130616347	12A2p6	cell line	sgMsh2	130616347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	119	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.A187G:p.T63A,Fastkd5:NM_001377125:exon2:c.A187G:p.T63A,Fastkd5:NM_001146084:exon3:c.A187G:p.T63A,Fastkd5:NM_198176:exon3:c.A187G:p.T63A"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9987901	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	130970141	12A2p6	cell line	sgMsh2	130970141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	66	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon12:c.A2005T:p.T669S	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9935499	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	89	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	115	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.99999	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	134988178	12A2p6	cell line	sgMsh2	134988178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	77	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon3:c.G232A:p.A78T,Plcb1:NM_019677:exon3:c.G232A:p.A78T"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	135362393	12A2p6	cell line	sgMsh2	135362393	A	G	SNV	Mutect2;Vardict	2	0.025	255	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon25:c.A2666G:p.K889R,Plcb1:NM_019677:exon25:c.A2666G:p.K889R"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.1070741	3	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	136756134	12A2p6	cell line	sgMsh2	136756134	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	46	0	0	NA	exonic	Snap25	nonsynonymous SNV	"Snap25:NM_001291056:exon2:c.C5A:p.A2D,Snap25:NM_001355254:exon2:c.C5A:p.A2D,Snap25:NM_001355255:exon2:c.C5A:p.A2D,Snap25:NM_011428:exon2:c.C5A:p.A2D"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.990486	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	137089324	12A2p6	cell line	sgMsh2	137089324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	78	0	0	NA	exonic	Jag1	synonymous SNV	Jag1:NM_013822:exon15:c.T1887C:p.N629N	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.69384017	2	0.7617914	TAT	synonymous	NA	NA	NA	NA
SSC	chr2	144502992	12A2p6	cell line	sgMsh2	144502992	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	85	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon9:c.A844C:p.N282H,Dzank1:NM_001360362:exon9:c.A844C:p.N282H,Dzank1:NM_001360363:exon9:c.A844C:p.N282H,Dzank1:NM_172859:exon9:c.A844C:p.N282H"	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.680991278	2	0.8537646	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	150625090	12A2p6	cell line	sgMsh2	150625090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	82	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.A1586G:p.H529R	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9961348	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	151706653	12A2p6	cell line	sgMsh2	151706653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	63	0	0	NA	exonic	Tmem74b	nonsynonymous SNV	Tmem74b:NM_001160363:exon2:c.T299C:p.V100A	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9970567	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	40	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.878007622	1	0.9301124	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	152441250	12A2p6	cell line	sgMsh2	152441250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	158	0	0	NA	exonic	6820408C15Rik	nonsynonymous SNV	"6820408C15Rik:NM_001379452:exon6:c.T626C:p.L209P,6820408C15Rik:NM_001289738:exon10:c.T836C:p.L279P,6820408C15Rik:NM_177656:exon10:c.T833C:p.L278P"	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.719537954	2	0.9227228	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
SSC	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	107	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9976031	CTG	synonymous	NA	NA	NA	NA
SSC	chr2	153392875	12A2p6	cell line	sgMsh2	153392875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	exonic	Asxl1	nonsynonymous SNV	Asxl1:NM_001039939:exon6:c.T506A:p.L169Q	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	153401476	12A2p6	cell line	sgMsh2	153401476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	100	0	0	NA	exonic	Asxl1	synonymous SNV	Asxl1:NM_001039939:exon12:c.T3948C:p.S1316S	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9978998	CTG	synonymous	NA	NA	NA	NA
SSC	chr2	154504560	12A2p6	cell line	sgMsh2	154504560	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	57	0	0	NA	exonic	Cbfa2t2	nonsynonymous SNV	"Cbfa2t2:NM_009823:exon3:c.T186A:p.N62K,Cbfa2t2:NM_172860:exon3:c.T186A:p.N62K"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9855158	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	155385359	12A2p6	cell line	sgMsh2	155385359	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	166	0	0	NA	exonic	Trp53inp2	nonsynonymous SNV	Trp53inp2:NM_178111:exon2:c.A19C:p.S7R	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.595331997	2	0.999933	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	155437993	12A2p6	cell line	sgMsh2	155437993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	91	0	0	NA	exonic	Ncoa6	synonymous SNV	"Ncoa6:NM_001242558:exon2:c.T102C:p.D34D,Ncoa6:NM_019825:exon2:c.T102C:p.D34D"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9995774	CAT	synonymous	TCA	8	TCATCATC	NA
SSC	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.187	101	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8458206	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	156264345	12A2p6	cell line	sgMsh2	156264345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	133	0	0	NA	exonic	Phf20	synonymous SNV	Phf20:NM_172674:exon5:c.T405G:p.A135A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999771	CTT	synonymous	T	5	TTTTT	NA
SSC	chr2	156312789	12A2p6	cell line	sgMsh2	156312789	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.204	52	0	0	NA	exonic	Cnbd2	nonsynonymous SNV	"Cnbd2:NM_001316755:exon1:c.C257T:p.P86L,Cnbd2:NM_027585:exon1:c.C257T:p.P86L"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.9455349	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	156525099	12A2p6	cell line	sgMsh2	156525099	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.245	58	0	0	NA	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291121:exon15:c.T1851C:p.H617H,Epb41l1:NM_001368802:exon15:c.T1884C:p.H628H,Epb41l1:NM_001368804:exon15:c.T1887C:p.H629H,Epb41l1:NM_013510:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291120:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368801:exon16:c.T1863C:p.H621H,Epb41l1:NM_001368803:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368800:exon18:c.T3918C:p.H1306H"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9958408	ATG	synonymous	NA	NA	NA	NA
SSC	chr2	157027427	12A2p6	cell line	sgMsh2	157027427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	17	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.T3287C:p.V1096A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9329332	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	303	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	1.17E-09	TAT	synonymous	NA	NA	NA	NA
SSC	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	91	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	GCG	synonymous	NA	NA	NA	NA
SSC	chr2	158547781	12A2p6	cell line	sgMsh2	158547781	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	69	0	0	NA	exonic	Arhgap40	nonsynonymous SNV	Arhgap40:NM_001145015:exon13:c.A1864C:p.S622R	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	160908277	12A2p6	cell line	sgMsh2	160908277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	63	0	0	NA	exonic	Emilin3	synonymous SNV	"Emilin3:NM_001291145:exon4:c.T1410C:p.S470S,Emilin3:NM_182840:exon4:c.T1551C:p.S517S"	2qH2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	1	0.9970567	TAC	synonymous	GTG	8	GTGGTGGT	NA
SSC	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	155	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.999995	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
SSC	chr2	163568959	12A2p6	cell line	sgMsh2	163568959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	120	0	0	NA	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon9:c.A1202G:p.N401S,Hnf4a:NM_001312906:exon10:c.A1127G:p.N376S,Hnf4a:NM_001312907:exon10:c.A1127G:p.N376S"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999435	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	164037125	12A2p6	cell line	sgMsh2	164037125	T	-	Deletion	Strelka2;Vardict	2	0.0431	116	0	0	NA	exonic	Pabpc1l	stopgain	Pabpc1l:NM_001114079:exon7:c.891delT:p.Y297fs*0	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.184595749	NA	NA	ATG	nonsynonymous	NA	NA	NA	-1
SSC	chr2	164777838	12A2p6	cell line	sgMsh2	164777838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	0	0	NA	exonic	Tnnc2	synonymous SNV	Tnnc2:NM_009394:exon4:c.T207C:p.G69G	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999459	TAC	synonymous	NA	NA	NA	NA
SSC	chr2	166951271	12A2p6	cell line	sgMsh2	166951271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	213	0	0	NA	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon8:c.A925G:p.S309G,Stau1:NM_001109906:exon8:c.A943G:p.S315G,Stau1:NM_001291160:exon8:c.A925G:p.S309G,Stau1:NM_011490:exon8:c.A919G:p.S307G"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	184	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999993	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	21	0	0	NA	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9412974	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	168634907	12A2p6	cell line	sgMsh2	168634907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	49	0	0	NA	exonic	Atp9a	synonymous SNV	"Atp9a:NM_001289445:exon28:c.T2961C:p.D987D,Atp9a:NM_001289446:exon28:c.T2955C:p.D985D,Atp9a:NM_001354977:exon28:c.T2943C:p.D981D,Atp9a:NM_001354978:exon28:c.T2721C:p.D907D,Atp9a:NM_015731:exon28:c.T3009C:p.D1003D"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.599614961	2	8.65E-05	CAT	synonymous	NA	NA	NA	NA
SSC	chr2	168648698	12A2p6	cell line	sgMsh2	168648698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	70	0	0	NA	exonic	Atp9a	nonsynonymous SNV	"Atp9a:NM_001289445:exon21:c.T2159A:p.V720D,Atp9a:NM_001289446:exon21:c.T2153A:p.V718D,Atp9a:NM_001354977:exon21:c.T2141A:p.V714D,Atp9a:NM_001354978:exon21:c.T1919A:p.V640D,Atp9a:NM_015731:exon21:c.T2207A:p.V736D"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	168926540	12A2p6	cell line	sgMsh2	168926540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	148	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.T1151C:p.L384P	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999919	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	170119275	12A2p6	cell line	sgMsh2	170119275	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	208	0	0	NA	exonic	Zfp217	synonymous SNV	"Zfp217:NM_001033299:exon2:c.T1131C:p.S377S,Zfp217:NM_001159683:exon3:c.T1131C:p.S377S"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
SSC	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	113	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	66	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.792348342	1	0.8062351	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	174285433	12A2p6	cell line	sgMsh2	174285433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	27	0	0	NA	exonic	Gnas	stoploss	"Gnas:NM_019690:exon2:c.T760C:p.X254Q,Gnas:NM_022000:exon2:c.T760C:p.X254Q"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9653363	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	51	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9932568	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	238	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	1.67E-08	CTA	synonymous	NA	NA	NA	NA
SSC	chr2	178354939	12A2p6	cell line	sgMsh2	178354939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	121	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon34:c.C3470T:p.P1157L	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8521485	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	178360306	12A2p6	cell line	sgMsh2	178360306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	42	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon30:c.A2872G:p.R958G	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9874799	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	178481665	12A2p6	cell line	sgMsh2	178481665	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	104	0	0	NA	exonic	Cdh26	nonsynonymous SNV	"Cdh26:NM_001291189:exon13:c.C1999A:p.L667M,Cdh26:NM_198656:exon14:c.C2056A:p.L686M"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	179797475	12A2p6	cell line	sgMsh2	179797475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	84	0	0	NA	exonic	Cdh4	synonymous SNV	"Cdh4:NM_001316723:exon4:c.C414T:p.A138A,Cdh4:NM_009867:exon4:c.C414T:p.A138A"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	CCC	synonymous	NA	NA	NA	NA
SSC	chr2	180193764	12A2p6	cell line	sgMsh2	180193764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.367	51	0	0	NA	exonic	Lama5	frameshift deletion	Lama5:NM_001081171:exon30:c.3795delC:p.E1266Rfs*100	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC	chr2	180257790	12A2p6	cell line	sgMsh2	180257790	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	260	0	0	NA	exonic	Rps21	nonsynonymous SNV	"Rps21:NM_001355516:exon2:c.C53T:p.S18F,Rps21:NM_001355517:exon3:c.C53T:p.S18F,Rps21:NM_001355518:exon3:c.C53T:p.S18F,Rps21:NM_001355520:exon3:c.C53T:p.S18F,Rps21:NM_001355521:exon3:c.C53T:p.S18F,Rps21:NM_025587:exon3:c.C53T:p.S18F"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	4.41E-09	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr2	180472194	12A2p6	cell line	sgMsh2	180472194	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	148	0	0	NA	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon7:c.C1423A:p.L475I,Slco4a1:NM_148933:exon7:c.C1423A:p.L475I"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999919	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9958576	ATC	nonsynonymous	A	5	AAAAA	NA
SSC	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	142	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.11164545	NA	1	0.723820918	2	0.8672882	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr2	181864501	12A2p6	cell line	sgMsh2	181864501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	76	0	0	NA	exonic	Polr3k	nonsynonymous SNV	Polr3k:NM_025901:exon1:c.G43A:p.E15K	2qH4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GGA	nonsynonymous	GGA	8	GGAGGAGG	NA
SSC	chr3	5243737	12A2p6	cell line	sgMsh2	5243737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	150	0	0	NA	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon2:c.T2022C:p.Y674Y,Zfhx4:NM_030708:exon2:c.T2022C:p.Y674Y"	3qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
SSC	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	150	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	7528672	12A2p6	cell line	sgMsh2	7528672	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	130	0	0	NA	exonic	Zc2hc1a	frameshift deletion	Zc2hc1a:NM_173181:exon7:c.689delC:p.Q232Rfs*30	3qA1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC	chr3	14481277	12A2p6	cell line	sgMsh2	14481277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	171	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.A481G:p.K161E	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999984	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	14537323	12A2p6	cell line	sgMsh2	14537323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	0	0	NA	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon4:c.A475G:p.T159A,Lrrcc1:NM_001163580:exon4:c.A475G:p.T159A,Lrrcc1:NM_028915:exon4:c.A475G:p.T159A"	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.9992638	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	15548787	12A2p6	cell line	sgMsh2	15548787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	456	0	0	NA	exonic	Sirpb1b	synonymous SNV	Sirpb1b:NM_001173460:exon2:c.G234T:p.S78S	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.75808463	2	0.9817991	ACG	synonymous	NA	NA	NA	NA
SSC	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	97	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997213	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	19144391	12A2p6	cell line	sgMsh2	19144391	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	136	0	0	NA	exonic	Armc1	frameshift deletion	"Armc1:NM_001357689:exon4:c.404delT:p.L135Wfs*10,Armc1:NM_028840:exon4:c.404delT:p.L135Wfs*10"	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	95	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9247124	ACA	synonymous	NA	NA	NA	NA
SSC	chr3	20028996	12A2p6	cell line	sgMsh2	20028996	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	172	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon4:c.T535C:p.L179L,Hps3:NM_001146324:exon4:c.T931C:p.L311L,Hps3:NM_080634:exon4:c.T931C:p.L311L"	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.209865236	3	2.16E-09	AAC	synonymous	NA	NA	NA	NA
SSC	chr3	20315918	12A2p6	cell line	sgMsh2	20315918	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	175	0	0	NA	exonic	Agtr1b	nonsynonymous SNV	Agtr1b:NM_175086:exon2:c.A523C:p.T175P	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	24171705	12A2p6	cell line	sgMsh2	24171705	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	76	0	0	NA	exonic	Naaladl2	frameshift deletion	Naaladl2:NM_001326288:exon9:c.1559delA:p.N520Mfs*20	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.338354157	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr3	27126892	12A2p6	cell line	sgMsh2	27126892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	88	0	0	NA	exonic	Ect2	synonymous SNV	"Ect2:NM_001177625:exon16:c.T1719C:p.A573A,Ect2:NM_001177626:exon16:c.T1719C:p.A573A,Ect2:NM_007900:exon17:c.T1812C:p.A604A"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	AAG	synonymous	NA	NA	NA	NA
SSC	chr3	28646635	12A2p6	cell line	sgMsh2	28646635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	89	0	0	NA	exonic	Tnik	synonymous SNV	"Tnik:NM_001163008:exon22:c.T2649C:p.S883S,Tnik:NM_001163007:exon23:c.T2736C:p.S912S,Tnik:NM_001163009:exon23:c.T2736C:p.S912S,Tnik:NM_026910:exon24:c.T2760C:p.S920S"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	GTA	synonymous	NA	NA	NA	NA
SSC	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	190	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	31038519	12A2p6	cell line	sgMsh2	31038519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	157	0	0	NA	exonic	Prkci	synonymous SNV	Prkci:NM_008857:exon10:c.C949T:p.L317L	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999957	GCT	synonymous	NA	NA	NA	NA
SSC	chr3	34049256	12A2p6	cell line	sgMsh2	34049256	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	156	0	0	NA	exonic	Fxr1	nonsynonymous SNV	"Fxr1:NM_001113188:exon8:c.G734T:p.R245M,Fxr1:NM_001113189:exon8:c.G734T:p.R245M,Fxr1:NM_008053:exon8:c.G734T:p.R245M"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9990931	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	36035424	12A2p6	cell line	sgMsh2	36035424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	163	0	0	NA	exonic	Ccdc144b	frameshift deletion	Ccdc144b:NM_178418:exon4:c.350delA:p.N117Mfs*8	3qB	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.955100974	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	212	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	40964054	12A2p6	cell line	sgMsh2	40964054	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	100	0	0	NA	exonic	Larp1b	nonsynonymous SNV	"Larp1b:NM_001368221:exon3:c.G129T:p.E43D,Larp1b:NM_001040399:exon4:c.G129T:p.E43D,Larp1b:NM_001368222:exon4:c.G129T:p.E43D"	3qB	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9994245	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	41727115	12A2p6	cell line	sgMsh2	41727115	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	265	0	0	NA	exonic	Sclt1	nonsynonymous SNV	Sclt1:NM_001081411:exon5:c.A268C:p.T90P	3qB	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	3.41E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	49745181	12A2p6	cell line	sgMsh2	49745181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	95	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.G2831A:p.S944N	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.9996078	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	51266830	12A2p6	cell line	sgMsh2	51266830	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.057	90	0	0	NA	exonic	Elf2	frameshift deletion	"Elf2:NM_001291062:exon2:c.95delC:p.T32Rfs*19,Elf2:NM_001291063:exon2:c.95delC:p.T32Rfs*19,Elf2:NM_001291059:exon5:c.275delC:p.T92Rfs*19,Elf2:NM_023502:exon5:c.275delC:p.T92Rfs*19,Elf2:NM_001356358:exon6:c.38delC:p.T13Rfs*19"	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.244128949	NA	NA	CGT	frameshift	NA	NA	NA	-1
SSC	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	144	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9993933	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	55783196	12A2p6	cell line	sgMsh2	55783196	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	131	0	0	NA	exonic	Mab21l1	nonsynonymous SNV	Mab21l1:NM_010750:exon1:c.T203A:p.V68D	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999737	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	148	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999919	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	155	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.999995	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	66	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr3	59329502	12A2p6	cell line	sgMsh2	59329502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	164	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.C3257A:p.A1086D	3qD	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999973	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	62477287	12A2p6	cell line	sgMsh2	62477287	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	196	0	0	NA	exonic	Dhx36	nonsynonymous SNV	Dhx36:NM_028136:exon19:c.T2267G:p.F756C	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9741705	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	62602681	12A2p6	cell line	sgMsh2	62602681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	79	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon2:c.G1012A:p.G338R,Gpr149:NM_177346:exon2:c.G1012A:p.G338R"	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.719537954	2	0.6256288	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	67433363	12A2p6	cell line	sgMsh2	67433363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	146	0	0	NA	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon3:c.T246C:p.G82G	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999907	GTA	synonymous	NA	NA	NA	NA
SSC	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	168	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.999998	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	146	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999907	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	82108956	12A2p6	cell line	sgMsh2	82108956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	66	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon5:c.A724G:p.S242G,Gucy1a1:NM_001356988:exon5:c.A724G:p.S242G,Gucy1a1:NM_021896:exon5:c.A724G:p.S242G"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.766650558	1	0.7017196	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	82865447	12A2p6	cell line	sgMsh2	82865447	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	239	0	0	NA	exonic	Rbm46	nonsynonymous SNV	"Rbm46:NM_001146328:exon3:c.T377C:p.I126T,Rbm46:NM_001277170:exon3:c.T377C:p.I126T"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	82903682	12A2p6	cell line	sgMsh2	82903682	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	86	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.C31A:p.L11I	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
SSC	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	170	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999982	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	84594306	12A2p6	cell line	sgMsh2	84594306	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	220	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.529delA:p.N178Mfs*4	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr3	86787246	12A2p6	cell line	sgMsh2	86787246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	39	0	0	NA	exonic	Dclk2	nonsynonymous SNV	"Dclk2:NM_001195497:exon16:c.A2234G:p.D745G,Dclk2:NM_027539:exon16:c.A2237G:p.D746G,Dclk2:NM_001195496:exon17:c.A2282G:p.D761G,Dclk2:NM_001357460:exon17:c.A2285G:p.D762G"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.9846265	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	86998695	12A2p6	cell line	sgMsh2	86998695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	166	0	0	NA	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379503:exon1:c.A176T:p.Y59F,Cd1d1:NM_007639:exon2:c.A272T:p.Y91F"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.9999967	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	87448357	12A2p6	cell line	sgMsh2	87448357	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	73	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon6:c.A1112C:p.E371A,Fcrl5:NM_183222:exon7:c.A1376C:p.E459A"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	87913145	12A2p6	cell line	sgMsh2	87913145	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	135	0	0	NA	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
SSC	chr3	88449705	12A2p6	cell line	sgMsh2	88449705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	70	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.A958G:p.I320V,Sema4a:NM_001163490:exon9:c.A958G:p.I320V,Sema4a:NM_001163491:exon9:c.A958G:p.I320V,Sema4a:NM_013658:exon9:c.A958G:p.I320V"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	88484999	12A2p6	cell line	sgMsh2	88484999	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.124	49	0	0	NA	exonic	Lmna	nonsynonymous SNV	"Lmna:NM_001002011:exon6:c.T1085G:p.L362R,Lmna:NM_001111102:exon6:c.T1085G:p.L362R,Lmna:NM_019390:exon6:c.T749G:p.L250R"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.531087537	2	0.9453276	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	88651966	12A2p6	cell line	sgMsh2	88651966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	110	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A1177C:p.S393R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.732386846	2	0.6920992	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	88652659	12A2p6	cell line	sgMsh2	88652659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	100	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A484G:p.T162A	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	88911810	12A2p6	cell line	sgMsh2	88911810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	124	0	0	NA	exonic	Msto1	nonsynonymous SNV	Msto1:NM_144898:exon7:c.T590C:p.L197P	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9991884	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	88982717	12A2p6	cell line	sgMsh2	88982717	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	118	0	0	NA	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon2:c.A1902T:p.E634D	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9570362	AAT	nonsynonymous	A	5	AAAAA	NA
SSC	chr3	89188430	12A2p6	cell line	sgMsh2	89188430	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	45	0	0	NA	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon10:c.G818T:p.R273M,Fam189b:NM_001014995:exon11:c.G1790T:p.R597M,Fam189b:NM_001355760:exon11:c.G1472T:p.R491M"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9122612	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	89208378	12A2p6	cell line	sgMsh2	89208378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	126	0	0	NA	exonic	Gba	synonymous SNV	"Gba:NM_001077411:exon10:c.A1392G:p.T464T,Gba:NM_008094:exon11:c.A1392G:p.T464T"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999627	CAG	synonymous	NA	NA	NA	NA
SSC	chr3	89736059	12A2p6	cell line	sgMsh2	89736059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	95	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon2:c.T502G:p.L168V,Adar:NM_001146296:exon2:c.T1246G:p.L416V,Adar:NM_001357958:exon2:c.T1363G:p.L455V,Adar:NM_019655:exon2:c.T1246G:p.L416V"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	89781829	12A2p6	cell line	sgMsh2	89781829	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	74	0	0	NA	exonic	Ube2q1	frameshift deletion	Ube2q1:NM_027315:exon12:c.1229delA:p.N412Tfs*29	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr3	90079835	12A2p6	cell line	sgMsh2	90079835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	50	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.T104C:p.V35A,Tpm3:NM_001253740:exon1:c.T104C:p.V35A,Tpm3:NM_001271764:exon1:c.T104C:p.V35A,Tpm3:NM_001293749:exon1:c.T104C:p.V35A,Tpm3:NM_001357581:exon1:c.T104C:p.V35A"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.9927756	GTG	nonsynonymous	GGAG	8	GGAGGGAG	NA
SSC	chr3	90185515	12A2p6	cell line	sgMsh2	90185515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	89	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon28:c.A3775C:p.S1259R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	90254536	12A2p6	cell line	sgMsh2	90254536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	49	0	0	NA	exonic	Crtc2	nonsynonymous SNV	Crtc2:NM_028881:exon1:c.T131C:p.M44T	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.663859422	2	0.6646333	ATG	nonsynonymous	TGA	8	TGATGATG	NA
SSC	chr3	90464836	12A2p6	cell line	sgMsh2	90464836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	26	0	0	NA	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon1:c.A668G:p.H223R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9629374	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	94779986	12A2p6	cell line	sgMsh2	94779986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	46	0	0	NA	exonic	Cgn	nonsynonymous SNV	"Cgn:NM_001037711:exon2:c.T2C:p.M1T,Cgn:NM_001293727:exon2:c.T2C:p.M1T"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.990486	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	95008613	12A2p6	cell line	sgMsh2	95008613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	82	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon6:c.T2939C:p.V980A,Zfp687:NM_030074:exon6:c.T2939C:p.V980A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.999211	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	85	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.71525499	2	0.6868117	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	95763832	12A2p6	cell line	sgMsh2	95763832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	28	0	0	NA	exonic	Rprd2	nonsynonymous SNV	"Rprd2:NM_001368179:exon10:c.A4126G:p.M1376V,Rprd2:NM_001081293:exon11:c.A4258G:p.M1420V,Rprd2:NM_001368178:exon11:c.A4204G:p.M1402V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.9675851	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	95853516	12A2p6	cell line	sgMsh2	95853516	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	91	0	0	NA	exonic	Prpf3	nonsynonymous SNV	"Prpf3:NM_001316751:exon2:c.T73C:p.F25L,Prpf3:NM_027541:exon2:c.T73C:p.F25L"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	120	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9871444	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	96699427	12A2p6	cell line	sgMsh2	96699427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	31	0	0	NA	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.T32C:p.V11A,Pias3:NM_018812:exon2:c.T32C:p.V11A,Pias3:NM_146135:exon2:c.T5C:p.V2A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9617905	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	96699439	12A2p6	cell line	sgMsh2	96699439	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	36	0	0	NA	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.G44C:p.R15P,Pias3:NM_018812:exon2:c.G44C:p.R15P,Pias3:NM_146135:exon2:c.G17C:p.R6P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.966305	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	96706991	12A2p6	cell line	sgMsh2	96706991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	60	0	0	NA	exonic	Nudt17	nonsynonymous SNV	"Nudt17:NM_001162925:exon6:c.A701G:p.D234G,Nudt17:NM_030094:exon6:c.A650G:p.D217G"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.621029781	2	0.8836734	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	97562644	12A2p6	cell line	sgMsh2	97562644	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	285	0	0	NA	exonic	Chd1l	frameshift deletion	Chd1l:NM_026539:exon22:c.2565delT:p.F855Lfs*66	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC	chr3	98104463	12A2p6	cell line	sgMsh2	98104463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	88	0	0	NA	exonic	Notch2	nonsynonymous SNV	Notch2:NM_010928:exon11:c.A1796G:p.Y599C	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	98126210	12A2p6	cell line	sgMsh2	98126210	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	187	0	0	NA	exonic	Notch2	synonymous SNV	Notch2:NM_010928:exon22:c.C3621T:p.N1207N	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999995	ACC	synonymous	NA	NA	NA	NA
SSC	chr3	98302625	12A2p6	cell line	sgMsh2	98302625	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.08	75	0	0	NA	exonic	Hmgcs2	frameshift deletion	Hmgcs2:NM_008256:exon8:c.1298delC:p.L435Wfs*13	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.342637121	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr3	100075744	12A2p6	cell line	sgMsh2	100075744	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon30:c.A4359C:p.E1453D	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.9986539	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	100892563	12A2p6	cell line	sgMsh2	100892563	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	69	0	0	NA	exonic	Vtcn1	synonymous SNV	Vtcn1:NM_178594:exon5:c.A739C:p.R247R	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	AAG	synonymous	NA	NA	NA	NA
SSC	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	103737934	12A2p6	cell line	sgMsh2	103737934	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	26	0	0	NA	exonic	Olfml3	nonsynonymous SNV	Olfml3:NM_133859:exon1:c.T2G:p.M1R	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.9629374	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	103928888	12A2p6	cell line	sgMsh2	103928888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	165	0	0	NA	exonic	Rsbn1	nonsynonymous SNV	"Rsbn1:NM_001356556:exon2:c.T1241C:p.I414T,Rsbn1:NM_001356557:exon2:c.T1235C:p.I412T,Rsbn1:NM_001356558:exon2:c.T1241C:p.I414T,Rsbn1:NM_172684:exon2:c.T1241C:p.I414T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9999224	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	104051031	12A2p6	cell line	sgMsh2	104051031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	175	0	0	NA	exonic	Magi3	synonymous SNV	"Magi3:NM_001159354:exon10:c.A1737G:p.L579L,Magi3:NM_133853:exon10:c.A1737G:p.L579L"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9999629	CTA	synonymous	NA	NA	NA	NA
SSC	chr3	104085353	12A2p6	cell line	sgMsh2	104085353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	148	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon5:c.T802G:p.C268G,Magi3:NM_133853:exon5:c.T802G:p.C268G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9995844	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	99	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997574	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	116	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	107194415	12A2p6	cell line	sgMsh2	107194415	T	-	Deletion	Mutect2;Vardict	2	0.058	138	0	0	NA	exonic	Kcna10	frameshift deletion	Kcna10:NM_001081140:exon2:c.361delT:p.F122Lfs*3	3qF2.3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.248411913	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC	chr3	108351702	12A2p6	cell line	sgMsh2	108351702	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	104	0	0	NA	exonic	Sort1	synonymous SNV	"Sort1:NM_001271599:exon16:c.C2049A:p.A683A,Sort1:NM_019972:exon16:c.C2049A:p.A683A"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.214148201	3	0.9999907	CCT	synonymous	NA	NA	NA	NA
SSC	chr3	108377411	12A2p6	cell line	sgMsh2	108377411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	156	0	0	NA	exonic	Mybphl	nonsynonymous SNV	Mybphl:NM_026831:exon7:c.A973G:p.S325G	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999954	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	68	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	109163532	12A2p6	cell line	sgMsh2	109163532	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.154	59	0	0	NA	exonic	Slc25a24	frameshift deletion	Slc25a24:NM_172685:exon9:c.1206delC:p.L404Wfs*3	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.659576458	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr3	114094529	12A2p6	cell line	sgMsh2	114094529	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	194	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon6:c.G787A:p.D263N	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999988	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	115122270	12A2p6	cell line	sgMsh2	115122270	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	88	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.T751A:p.Y251N,Olfm3:NM_153157:exon6:c.T850A:p.Y284N,Olfm3:NM_153458:exon6:c.T790A:p.Y264N"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	116891951	12A2p6	cell line	sgMsh2	116891951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	136	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon9:c.T970C:p.Y324H,Frrs1:NM_009146:exon9:c.T970C:p.Y324H"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999814	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	121992888	12A2p6	cell line	sgMsh2	121992888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	173	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.A1101G:p.Q367Q,Arhgap29:NM_172525:exon11:c.A1101G:p.Q367Q"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9999751	AAC	synonymous	AACA	9	AACAAACAA	NA
SSC	chr3	121992907	12A2p6	cell line	sgMsh2	121992907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	162	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.T1120C:p.L374L,Arhgap29:NM_172525:exon11:c.T1120C:p.L374L"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.999075	GTT	synonymous	NA	NA	NA	NA
SSC	chr3	122141699	12A2p6	cell line	sgMsh2	122141699	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	154	0	0	NA	exonic	Abca4	synonymous SNV	Abca4:NM_007378:exon31:c.G4545A:p.Q1515Q	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9942873	AGC	synonymous	NA	NA	NA	NA
SSC	chr3	122275474	12A2p6	cell line	sgMsh2	122275474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	184	0	0	NA	exonic	Dnttip2	nonsynonymous SNV	Dnttip2:NM_153806:exon2:c.A337G:p.T113A	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999993	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	165	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.740952774	2	0.8124779	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	124413820	12A2p6	cell line	sgMsh2	124413820	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	125	0	0	NA	exonic	1700006A11Rik	frameshift deletion	"1700006A11Rik:NM_001357195:exon6:c.505delT:p.S169Pfs*2,1700006A11Rik:NM_027939:exon7:c.721delT:p.S241Pfs*2"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr3	125438267	12A2p6	cell line	sgMsh2	125438267	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	154	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A484C:p.I162L	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999947	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	126834575	12A2p6	cell line	sgMsh2	126834575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	195	0	0	NA	exonic	Camk2d	synonymous SNV	"Camk2d:NM_001025438:exon15:c.A1035G:p.A345A,Camk2d:NM_023813:exon15:c.A1035G:p.A345A,Camk2d:NM_001293664:exon16:c.A1077G:p.A359A,Camk2d:NM_001293665:exon16:c.A639G:p.A213A,Camk2d:NM_001025439:exon17:c.A1137G:p.A379A,Camk2d:NM_001293663:exon17:c.A1137G:p.A379A,Camk2d:NM_001346635:exon17:c.A1137G:p.A379A,Camk2d:NM_001346636:exon17:c.A1137G:p.A379A"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	CAC	synonymous	NA	NA	NA	NA
SSC	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	123	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9985556	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	132178080	12A2p6	cell line	sgMsh2	132178080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	133	0	0	NA	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon4:c.A740G:p.Y247C	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999771	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	132715641	12A2p6	cell line	sgMsh2	132715641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	95	0	0	NA	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon6:c.A508G:p.T170A	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9973436	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	132885813	12A2p6	cell line	sgMsh2	132885813	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	94	0	0	NA	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1545A:p.N515K,Npnt:NM_001287103:exon11:c.T1233A:p.N411K,Npnt:NM_001287102:exon12:c.T1638A:p.N546K,Npnt:NM_033525:exon12:c.T1596A:p.N532K,Npnt:NM_001287101:exon13:c.T1689A:p.N563K"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	112	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999016	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	137865619	12A2p6	cell line	sgMsh2	137865619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	96	0	0	NA	exonic	H2az1	nonsynonymous SNV	"H2az1:NM_001316995:exon3:c.T181C:p.Y61H,H2az1:NM_016750:exon3:c.T181C:p.Y61H"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr3	138148506	12A2p6	cell line	sgMsh2	138148506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	82	0	0	NA	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon3:c.T344C:p.V115A,Trmt10a:NM_175389:exon3:c.T344C:p.V115A,Trmt10a:NM_001348197:exon4:c.T344C:p.V115A"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.9990601	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	139015582	12A2p6	cell line	sgMsh2	139015582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	148	0	0	NA	exonic	Rap1gds1	nonsynonymous SNV	"Rap1gds1:NM_001040690:exon4:c.A325G:p.T109A,Rap1gds1:NM_001286759:exon4:c.A325G:p.T109A,Rap1gds1:NM_001356388:exon4:c.A325G:p.T109A,Rap1gds1:NM_145544:exon4:c.A325G:p.T109A"	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999919	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	139298464	12A2p6	cell line	sgMsh2	139298464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	163	0	0	NA	exonic	Stpg2	nonsynonymous SNV	Stpg2:NM_198659:exon7:c.G801A:p.M267I	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.999996	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	142312189	12A2p6	cell line	sgMsh2	142312189	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	0	0	NA	exonic	Pdlim5	nonsynonymous SNV	"Pdlim5:NM_001190857:exon4:c.A317C:p.E106A,Pdlim5:NM_022554:exon4:c.A317C:p.E106A,Pdlim5:NM_001190852:exon5:c.A317C:p.E106A,Pdlim5:NM_001190854:exon5:c.A317C:p.E106A,Pdlim5:NM_001190855:exon5:c.A317C:p.E106A,Pdlim5:NM_001190856:exon5:c.A317C:p.E106A,Pdlim5:NM_019808:exon5:c.A644C:p.E215A,Pdlim5:NM_019809:exon5:c.A644C:p.E215A"	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9998327	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	142618173	12A2p6	cell line	sgMsh2	142618173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	124	0	0	NA	exonic	Gbp2b	nonsynonymous SNV	Gbp2b:NM_010259:exon11:c.A1738G:p.M580V	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.642444602	2	0.9922143	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr3	145988293	12A2p6	cell line	sgMsh2	145988293	T	C	SNV	Mutect2;MuSe;Vardict	3	0.333	10	0	0	NA	exonic	Syde2	nonsynonymous SNV	Syde2:NM_001166064:exon1:c.T295C:p.Y99H	3qH2	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	2	1	1	0.8951264	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
SSC	chr3	153509458	12A2p6	cell line	sgMsh2	153509458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	65	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon2:c.A58G:p.I20V	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9857141	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr3	154265529	12A2p6	cell line	sgMsh2	154265529	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	180	0	0	NA	exonic	Slc44a5	frameshift deletion	Slc44a5:NM_001081263:exon21:c.2015delT:p.F673Sfs*7	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.989364686	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr3	154720125	12A2p6	cell line	sgMsh2	154720125	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon3:c.G258A:p.A86A	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	CGC	synonymous	NA	NA	NA	NA
SSC	chr3	154727461	12A2p6	cell line	sgMsh2	154727461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	141	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon4:c.G480A:p.G160G	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	GGA	synonymous	NA	NA	NA	NA
SSC	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	62	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	1	1	0.9968458	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr3	155055306	12A2p6	cell line	sgMsh2	155055306	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	94	0	0	NA	exonic	Tnni3k	frameshift deletion	Tnni3k:NM_177066:exon1:c.1delA:p.M1Wfs*26	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.766650558	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr3	158318471	12A2p6	cell line	sgMsh2	158318471	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	141	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon4:c.C385A:p.L129I,Lrrc7:NM_001370782:exon4:c.C385A:p.L129I,Lrrc7:NM_001081358:exon5:c.C286A:p.L96I,Lrrc7:NM_001291452:exon5:c.C286A:p.L96I,Lrrc7:NM_001291453:exon5:c.C286A:p.L96I"	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.11164545	NA	1	0.73666981	2	0.7763691	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	8752517	12A2p6	cell line	sgMsh2	8752517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	107	0	0	NA	exonic	Chd7	nonsynonymous SNV	Chd7:NM_001277149:exon2:c.T1013C:p.V338A	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998607	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	11705939	12A2p6	cell line	sgMsh2	11705939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	48	0	0	NA	exonic	Gem	nonsynonymous SNV	Gem:NM_010276:exon2:c.G26A:p.R9H	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9917088	CGC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	12053539	12A2p6	cell line	sgMsh2	12053539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	160	0	0	NA	exonic	Tmem67	nonsynonymous SNV	Tmem67:NM_177861:exon20:c.A1999G:p.T667A	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999965	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	14548485	12A2p6	cell line	sgMsh2	14548485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	152	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon7:c.C803T:p.A268V	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999939	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	14913763	12A2p6	cell line	sgMsh2	14913763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	220	0	0	NA	exonic	Pip4p2	nonsynonymous SNV	Pip4p2:NM_028264:exon7:c.T670A:p.Y224N	4qA2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	98	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997399	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	19525129	12A2p6	cell line	sgMsh2	19525129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	40	0	0	NA	exonic	Cpne3	synonymous SNV	"Cpne3:NM_027769:exon15:c.A1365G:p.G455G,Cpne3:NM_001356481:exon16:c.A669G:p.G223G"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9856425	CTC	synonymous	NA	NA	NA	NA
SSC	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	94	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9996568	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	92	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9996057	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	21782984	12A2p6	cell line	sgMsh2	21782984	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.101	49	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon4:c.A375G:p.I125M,Usp45:NM_152825:exon4:c.A375G:p.I125M"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.432579365	2	0.9488774	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	79	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	ATG	synonymous	NA	NA	NA	NA
SSC	chr4	32725960	12A2p6	cell line	sgMsh2	32725960	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	102	0	0	NA	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon51:c.7878delA:p.N2627Tfs*25	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	99	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997574	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	33246353	12A2p6	cell line	sgMsh2	33246353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	72	0	0	NA	exonic	Pnrc1	nonsynonymous SNV	Pnrc1:NM_001033225:exon2:c.A605C:p.E202A	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9984218	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	34565153	12A2p6	cell line	sgMsh2	34565153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	137	0	0	NA	exonic	Akirin2	synonymous SNV	Akirin2:NM_001007589:exon3:c.A399G:p.P133P	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999826	CAT	synonymous	A	5	AAAAA	NA
SSC	chr4	34572529	12A2p6	cell line	sgMsh2	34572529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	71	0	0	NA	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon18:c.T1895C:p.I632T,Orc3:NM_015824:exon18:c.T1898C:p.I633T"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.436862329	2	0.984239	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	34808204	12A2p6	cell line	sgMsh2	34808204	T	-	Deletion	Mutect2;Vardict	2	0.058	192	0	0	NA	exonic	Zfp292	frameshift deletion	Zfp292:NM_013889:exon8:c.4854delA:p.V1619Lfs*4	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.248411913	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	103	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998162	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	34816365	12A2p6	cell line	sgMsh2	34816365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	86	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon7:c.T923C:p.V308A	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9994021	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	39451103	12A2p6	cell line	sgMsh2	39451103	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	72	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A308C:p.N103T	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9984218	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	42983564	12A2p6	cell line	sgMsh2	42983564	G	A	SNV	Mutect2;Vardict	2	0.051	77	0	0	NA	exonic	Vcp	nonsynonymous SNV	Vcp:NM_009503:exon13:c.C1495T:p.H499Y	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.218431165	3	0.9996586	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	43449514	12A2p6	cell line	sgMsh2	43449514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	98	0	0	NA	exonic	Cd72	synonymous SNV	"Cd72:NM_001110322:exon5:c.C690T:p.S230S,Cd72:NM_001110321:exon6:c.C801T:p.S267S,Cd72:NM_001110320:exon7:c.C873T:p.S291S,Cd72:NM_007654:exon7:c.C852T:p.S284S"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997399	CGC	synonymous	NA	NA	NA	NA
SSC	chr4	45279392	12A2p6	cell line	sgMsh2	45279392	T	C	SNV	Mutect2;Strelka2	2	0.432	36	0	0	NA	exonic	Frmpd1	nonsynonymous SNV	Frmpd1:NM_001081172:exon15:c.T2116C:p.Y706H	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9811351	CTA	nonsynonymous	GACT	8	GACTGACT	NA
SSC	chr4	45399900	12A2p6	cell line	sgMsh2	45399900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.242	130	0	0	NA	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.T238C:p.L80L	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999718	AAG	synonymous	NA	NA	NA	NA
SSC	chr4	46007511	12A2p6	cell line	sgMsh2	46007511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	63	0	0	NA	exonic	Tdrd7	nonsynonymous SNV	"Tdrd7:NM_001290475:exon8:c.A1562C:p.E521A,Tdrd7:NM_001355189:exon8:c.A1463C:p.E488A,Tdrd7:NM_146142:exon8:c.A1463C:p.E488A"	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9970567	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	46166741	12A2p6	cell line	sgMsh2	46166741	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.098	62	0	0	NA	exonic	Ncbp1	nonsynonymous SNV	Ncbp1:NM_001033201:exon17:c.A1604G:p.E535G	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.419730473	2	0.9529649	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	53040735	12A2p6	cell line	sgMsh2	53040735	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon44:c.T5911G:p.F1971V	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9977686	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	53543568	12A2p6	cell line	sgMsh2	53543568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	56	0	0	NA	exonic	Slc44a1	nonsynonymous SNV	"Slc44a1:NM_001159633:exon10:c.T1111G:p.F371V,Slc44a1:NM_001374697:exon10:c.T1111G:p.F371V,Slc44a1:NM_133891:exon10:c.T1111G:p.F371V"	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9952245	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	99	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997574	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	58084157	12A2p6	cell line	sgMsh2	58084157	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	64	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon35:c.T5614C:p.C1872R	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.402598617	2	0.09181118	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	58486775	12A2p6	cell line	sgMsh2	58486775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	39	0	0	NA	exonic	Lpar1	synonymous SNV	"Lpar1:NM_001290486:exon2:c.G441T:p.V147V,Lpar1:NM_010336:exon3:c.G495T:p.V165V,Lpar1:NM_172989:exon3:c.G495T:p.V165V"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9846265	CCA	synonymous	CAC	12	CACCACCACCAC	NA
SSC	chr4	58824277	12A2p6	cell line	sgMsh2	58824277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	63	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon30:c.T3357C:p.P1119P,Ecpas:NM_172381:exon30:c.T3339C:p.P1113P,Ecpas:NM_001355697:exon31:c.T3339C:p.P1113P"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9970567	AAG	synonymous	NA	NA	NA	NA
SSC	chr4	58872682	12A2p6	cell line	sgMsh2	58872682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	61	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon6:c.T636C:p.G212G,Ecpas:NM_172381:exon6:c.T618C:p.G206G,Ecpas:NM_001355697:exon7:c.T618C:p.G206G"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	AAC	synonymous	NA	NA	NA	NA
SSC	chr4	59022628	12A2p6	cell line	sgMsh2	59022628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	55	0	0	NA	exonic	Dnajc25	nonsynonymous SNV	Dnajc25:NM_001033165:exon4:c.A1019G:p.Y340C	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	59524445	12A2p6	cell line	sgMsh2	59524445	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	62	0	0	NA	exonic	Ptbp3	nonsynonymous SNV	Ptbp3:NM_144904:exon3:c.T74A:p.V25D	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.882290586	1	0.964505	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	114	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999143	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	64007763	12A2p6	cell line	sgMsh2	64007763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	54	0	0	NA	exonic	Tnc	nonsynonymous SNV	"Tnc:NM_001369213:exon7:c.T1996C:p.Y666H,Tnc:NM_001369211:exon8:c.T2779C:p.Y927H,Tnc:NM_001369212:exon8:c.T2779C:p.Y927H,Tnc:NM_001369214:exon8:c.T2779C:p.Y927H,Tnc:NM_011607:exon8:c.T2779C:p.Y927H"	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9945173	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	65204930	12A2p6	cell line	sgMsh2	65204930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	118	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon7:c.T2501C:p.I834T	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999351	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	65613639	12A2p6	cell line	sgMsh2	65613639	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	47	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.G432T:p.E144D,Trim32:NM_053084:exon2:c.G432T:p.E144D"	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9911183	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	72	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9984218	CTA	synonymous	NA	NA	NA	NA
SSC	chr4	70317460	12A2p6	cell line	sgMsh2	70317460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	49	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon10:c.A624G:p.T208T,Cdk5rap2:NM_145990:exon13:c.A1443G:p.T481T"	4qC2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.556785321	2	0.9200098	CTG	synonymous	ACTGCC	12	ACTGCCACTGCC	NA
SSC	chr4	72852198	12A2p6	cell line	sgMsh2	72852198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	177	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.T372A:p.R124R	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999989	CAC	synonymous	NA	NA	NA	NA
SSC	chr4	74170660	12A2p6	cell line	sgMsh2	74170660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	45	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon13:c.A1093G:p.S365G,Frmd3:NM_172869:exon13:c.A1093G:p.S365G"	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9898092	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	75956378	12A2p6	cell line	sgMsh2	75956378	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	90	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon24:c.G3815T:p.R1272M,Ptprd:NM_001352629:exon25:c.G3827T:p.R1276M,Ptprd:NM_001352630:exon25:c.G3824T:p.R1275M,Ptprd:NM_001368993:exon25:c.G3854T:p.R1285M,Ptprd:NM_001352628:exon26:c.G3866T:p.R1289M,Ptprd:NM_001368991:exon35:c.G3839T:p.R1280M,Ptprd:NM_011211:exon35:c.G3842T:p.R1281M"	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.999547	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	83263748	12A2p6	cell line	sgMsh2	83263748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	109	0	0	NA	exonic	Ttc39b	nonsynonymous SNV	Ttc39b:NM_027238:exon4:c.T233C:p.L78P	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998788	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	86087731	12A2p6	cell line	sgMsh2	86087731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	88	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon2:c.A86G:p.E29G,Adamtsl1:NM_029967:exon2:c.A86G:p.E29G"	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9994796	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	86585367	12A2p6	cell line	sgMsh2	86585367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	44	0	0	NA	exonic	Haus6	nonsynonymous SNV	Haus6:NM_173400:exon15:c.T1720A:p.L574I	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9890849	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	87840915	12A2p6	cell line	sgMsh2	87840915	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	93	0	0	NA	exonic	Mllt3	frameshift deletion	Mllt3:NM_027326:exon5:c.895delA:p.R299Gfs*18	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.453994185	NA	NA	CTT	frameshift	T	6	TTTTTT	-1
SSC	chr4	88408934	12A2p6	cell line	sgMsh2	88408934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	173	0	0	NA	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon43:c.T5261C:p.L1754P	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999986	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	88820339	12A2p6	cell line	sgMsh2	88820339	G	-	Deletion	Strelka2;Vardict	2	0.4595	309	0	0	NA	exonic	Ifna11	frameshift deletion	Ifna11:NM_008333:exon1:c.381delG:p.V129Cfs*5	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr4	95812157	12A2p6	cell line	sgMsh2	95812157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	76	0	0	NA	exonic	Fggy	nonsynonymous SNV	"Fggy:NM_001113412:exon10:c.A1064G:p.K355R,Fggy:NM_029347:exon10:c.A1064G:p.K355R"	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	96307294	12A2p6	cell line	sgMsh2	96307294	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	125	0	0	NA	exonic	Cyp2j11	synonymous SNV	Cyp2j11:NM_001004141:exon7:c.T1164C:p.A388A	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.179884488	3	3.01E-08	CAG	synonymous	NA	NA	NA	NA
SSC	chr4	96503958	12A2p6	cell line	sgMsh2	96503958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	141	0	0	NA	exonic	Cyp2j8	synonymous SNV	Cyp2j8:NM_001104927:exon2:c.T258C:p.G86G	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999868	TAC	synonymous	NA	NA	NA	NA
SSC	chr4	96545806	12A2p6	cell line	sgMsh2	96545806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	110	0	0	NA	exonic	Cyp2j6	nonsynonymous SNV	Cyp2j6:NM_010008:exon2:c.T266C:p.V89A	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998869	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	98020925	12A2p6	cell line	sgMsh2	98020925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	79	0	0	NA	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon6:c.A986G:p.Q329R,Nfia:NM_001122953:exon6:c.A917G:p.Q306R,Nfia:NM_010905:exon6:c.A917G:p.Q306R"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	CAG	nonsynonymous	CCAGT	10	CCAGTCCAGT	NA
SSC	chr4	98944672	12A2p6	cell line	sgMsh2	98944672	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	136	0	0	NA	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_026082:exon45:c.C5947T:p.L1983F,Dock7:NM_001290636:exon46:c.C6037T:p.L2013F,Dock7:NM_001369285:exon46:c.C5953T:p.L1985F,Dock7:NM_001369286:exon47:c.C6043T:p.L2015F"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999814	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	144	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999893	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
SSC	chr4	101940625	12A2p6	cell line	sgMsh2	101940625	T	G	SNV	Mutect2;Vardict	2	0.038	275	0	0	NA	exonic	Pramel19	synonymous SNV	Pramel19:NM_001085516:exon1:c.T219G:p.A73A	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.162752632	3	1	CTG	synonymous	NA	NA	NA	NA
SSC	chr4	102595966	12A2p6	cell line	sgMsh2	102595966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	55	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon3:c.A358G:p.T120A,Pde4b:NM_001177981:exon3:c.A175G:p.T59A,Pde4b:NM_001177982:exon3:c.A118G:p.T40A,Pde4b:NM_001374780:exon8:c.A643G:p.T215A,Pde4b:NM_019840:exon8:c.A829G:p.T277A"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	103072833	12A2p6	cell line	sgMsh2	103072833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon8:c.T960C:p.S320S	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	TAC	synonymous	NA	NA	NA	NA
SSC	chr4	103143160	12A2p6	cell line	sgMsh2	103143160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	77	0	0	NA	exonic	Mier1	nonsynonymous SNV	"Mier1:NM_001039081:exon7:c.A564C:p.Q188H,Mier1:NM_001286223:exon7:c.A561C:p.Q187H,Mier1:NM_001286221:exon9:c.A699C:p.Q233H,Mier1:NM_001286222:exon9:c.A615C:p.Q205H,Mier1:NM_027696:exon9:c.A615C:p.Q205H"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.998884	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	108008226	12A2p6	cell line	sgMsh2	108008226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	113	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon7:c.T880C:p.F294L	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999082	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	108021456	12A2p6	cell line	sgMsh2	108021456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	80	0	0	NA	exonic	Podn	nonsynonymous SNV	"Podn:NM_001285956:exon10:c.T1213C:p.Y405H,Podn:NM_001285958:exon10:c.T1213C:p.Y405H,Podn:NM_172874:exon10:c.T1213C:p.Y405H"	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990936	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	108826109	12A2p6	cell line	sgMsh2	108826109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	164	0	0	NA	exonic	Btf3l4	synonymous SNV	"Btf3l4:NM_001356361:exon3:c.T159C:p.G53G,Btf3l4:NM_027453:exon3:c.T159C:p.G53G"	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999973	TAC	synonymous	NA	NA	NA	NA
SSC	chr4	108890386	12A2p6	cell line	sgMsh2	108890386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	64	0	0	NA	exonic	Rab3b	nonsynonymous SNV	Rab3b:NM_023537:exon2:c.A79G:p.I27V	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9972535	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	109514830	12A2p6	cell line	sgMsh2	109514830	T	-	Deletion	Strelka2;Vardict	2	0.2923	65	0	0	NA	exonic	4930522H14Rik	frameshift deletion	"4930522H14Rik:NM_001199090:exon4:c.282delA:p.A95Lfs*22,4930522H14Rik:NM_026291:exon4:c.294delA:p.A99Lfs*22"	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC	chr4	111656401	12A2p6	cell line	sgMsh2	111656401	C	T	SNV	Mutect2;Vardict	2	0.038	136	0	0	NA	exonic	Agbl4	nonsynonymous SNV	"Agbl4:NM_001048189:exon12:c.C1343T:p.A448V,Agbl4:NM_001284190:exon12:c.C1343T:p.A448V,Agbl4:NM_030231:exon12:c.C1343T:p.A448V"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.162752632	3	2.01E-09	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	112298156	12A2p6	cell line	sgMsh2	112298156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	104	0	0	NA	exonic	Skint3	nonsynonymous SNV	"Skint3:NM_177578:exon8:c.A1110G:p.I370M,Skint3:NM_001348354:exon9:c.A978G:p.I326M,Skint3:NM_001102474:exon10:c.A1326G:p.I442M"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9998285	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	110	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998869	GCT	synonymous	NA	NA	NA	NA
SSC	chr4	112728889	12A2p6	cell line	sgMsh2	112728889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	72	0	0	NA	exonic	Skint10	stopgain	Skint10:NM_177668:exon4:c.G529T:p.G177X	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9984218	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	113004506	12A2p6	cell line	sgMsh2	113004506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	192	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon23:c.T1853C:p.M618T	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	113483888	12A2p6	cell line	sgMsh2	113483888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	117	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon56:c.T4150C:p.Y1384H,Skint5:NM_001167876:exon57:c.T4213C:p.Y1405H"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9999304	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	113571596	12A2p6	cell line	sgMsh2	113571596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	156	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon43:c.T3180C:p.S1060S,Skint5:NM_001167878:exon43:c.T3180C:p.S1060S"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999954	CAC	synonymous	NA	NA	NA	NA
SSC	chr4	115014223	12A2p6	cell line	sgMsh2	115014223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	103	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon8:c.A311G:p.N104S,Stil:NM_001304555:exon9:c.A989G:p.N330S,Stil:NM_001304559:exon9:c.A989G:p.N330S,Stil:NM_009185:exon9:c.A989G:p.N330S"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.916554298	1	0.9967038	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2267	75	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.970947941	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
SSC	chr4	115496100	12A2p6	cell line	sgMsh2	115496100	A	-	Deletion	Strelka2;Vardict	2	0.3019	53	0	0	NA	exonic	Cyp4a14	frameshift deletion	Cyp4a14:NM_007822:exon1:c.14delT:p.L5Yfs*59	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	TAAA	8	TAAATAAA	-1
SSC	chr4	115866539	12A2p6	cell line	sgMsh2	115866539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	86	0	0	NA	exonic	Mknk1	nonsynonymous SNV	"Mknk1:NM_001355174:exon7:c.A430G:p.T144A,Mknk1:NM_001369238:exon7:c.A430G:p.T144A,Mknk1:NM_021461:exon7:c.A430G:p.T144A,Mknk1:NM_001285488:exon8:c.A430G:p.T144A,Mknk1:NM_001285487:exon9:c.A448G:p.T150A"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9994021	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	116327723	12A2p6	cell line	sgMsh2	116327723	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	94	0	0	NA	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon8:c.T791G:p.F264C,Mast2:NM_008641:exon8:c.T791G:p.F264C,Mast2:NM_001042743:exon9:c.T812G:p.F271C,Mast2:NM_001369061:exon9:c.T812G:p.F271C"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9996568	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	118211472	12A2p6	cell line	sgMsh2	118211472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	36	0	0	NA	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon29:c.T5098C:p.Y1700H	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9811351	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	118385860	12A2p6	cell line	sgMsh2	118385860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	54	0	0	NA	exonic	Szt2	nonsynonymous SNV	Szt2:NM_198170:exon29:c.A4300G:p.I1434V	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9945173	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	118625631	12A2p6	cell line	sgMsh2	118625631	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	60	0	0	NA	exonic	Ebna1bp2	synonymous SNV	Ebna1bp2:NM_026932:exon8:c.A816G:p.R272R	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.385466761	2	0.000923873	GAG	synonymous	NA	NA	NA	NA
SSC	chr4	118734571	12A2p6	cell line	sgMsh2	118734571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	101	0	0	NA	exonic	Olfr1339	nonsynonymous SNV	Olfr1339:NM_146852:exon1:c.A41G:p.E14G	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997888	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	73	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9985275	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	119478012	12A2p6	cell line	sgMsh2	119478012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	37	0	0	NA	exonic	Rimkla	nonsynonymous SNV	Rimkla:NM_177572:exon2:c.T173C:p.L58P	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9823777	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	120096995	12A2p6	cell line	sgMsh2	120096995	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.186	24	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A2507G:p.Q836R	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.796631306	1	0.8141821	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	120098500	12A2p6	cell line	sgMsh2	120098500	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	89	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A4012C:p.T1338P	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9995145	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	120535763	12A2p6	cell line	sgMsh2	120535763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	31	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon4:c.C1051T:p.R351C	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.73666981	1	0.7026097	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	101	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997888	CAG	synonymous	GT	8	GTGTGTGT	NA
SSC	chr4	123471072	12A2p6	cell line	sgMsh2	123471072	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	59	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.T9895C:p.F3299L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9961186	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	123475869	12A2p6	cell line	sgMsh2	123475870	AT	TC	DBS	Mutect2;Vardict	2	0.343	140	0	0	NA	exonic	Macf1	nonframeshift substitution	Macf1:NM_001199136:exon36:c.5097_5098GA:p.S1700T	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	90	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.999547	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	124913150	12A2p6	cell line	sgMsh2	124913150	T	C	SNV	Mutect2;Vardict	2	0.095	42	0	0	NA	exonic	Epha10	nonsynonymous SNV	Epha10:NM_001256432:exon11:c.T1988C:p.L663P	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.406881581	2	0.8765921	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
SSC	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	56	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9952245	TAG	synonymous	NA	NA	NA	NA
SSC	chr4	126575864	12A2p6	cell line	sgMsh2	126575864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	31	0	0	NA	exonic	Clspn	nonsynonymous SNV	Clspn:NM_175554:exon13:c.C2225T:p.S742L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9735165	TCA	nonsynonymous	NA	NA	NA	NA
SSC	chr4	126832123	12A2p6	cell line	sgMsh2	126832123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon9:c.A1325G:p.H442R,AU040320:NM_001035526:exon9:c.A1325G:p.H442R,AU040320:NM_133886:exon9:c.A1325G:p.H442R,AU040320:NM_001355196:exon11:c.A1262G:p.H421R"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9961186	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	127048748	12A2p6	cell line	sgMsh2	127048748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	90	0	0	NA	exonic	Zmym1	nonsynonymous SNV	"Zmym1:NM_026670:exon8:c.T1846C:p.F616L,Zmym1:NM_001356311:exon9:c.T1630C:p.F544L"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.999547	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	127988083	12A2p6	cell line	sgMsh2	127988083	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	18	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon1:c.G14T:p.R5L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9371498	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998869	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	128475742	12A2p6	cell line	sgMsh2	128475742	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon36:c.A5666C:p.E1889A	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9976086	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	128534263	12A2p6	cell line	sgMsh2	128534263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	50	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon56:c.C8806T:p.R2936C	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9927756	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	53	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9941256	CAT	synonymous	NA	NA	NA	NA
SSC	chr4	129076254	12A2p6	cell line	sgMsh2	129076254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	61	0	0	NA	exonic	Rnf19b	synonymous SNV	"Rnf19b:NM_001368763:exon5:c.A1233G:p.P411P,Rnf19b:NM_029219:exon5:c.A1230G:p.P410P"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	CAG	synonymous	NA	NA	NA	NA
SSC	chr4	129555543	12A2p6	cell line	sgMsh2	129555543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	26	0	0	NA	exonic	Lck	synonymous SNV	"Lck:NM_010693:exon8:c.G960A:p.E320E,Lck:NM_001162432:exon9:c.G993A:p.E331E,Lck:NM_001162433:exon9:c.G960A:p.E320E"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9629374	TCT	synonymous	NA	NA	NA	NA
SSC	chr4	130166970	12A2p6	cell line	sgMsh2	130166970	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	75	0	0	NA	exonic	Tinagl1	synonymous SNV	"Tinagl1:NM_001168333:exon10:c.C1146T:p.H382H,Tinagl1:NM_023476:exon10:c.C1146T:p.H382H"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.483974933	2	0.9973153	TGT	synonymous	NA	NA	NA	NA
SSC	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	22	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.9516513	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	133528731	12A2p6	cell line	sgMsh2	133528731	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	89	0	0	NA	exonic	Kdf1	nonsynonymous SNV	"Kdf1:NM_001083916:exon2:c.T758C:p.V253A,Kdf1:NM_133707:exon2:c.T758C:p.V253A"	4qD2.3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.299807481	3	0.9835587	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	133693973	12A2p6	cell line	sgMsh2	133693973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	74	0	0	NA	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon8:c.T2520G:p.G840G,Arid1a:NM_001363070:exon8:c.T1365G:p.G455G"	4qD2.3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9986261	GAC	synonymous	NA	NA	NA	NA
SSC	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	124	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999572	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	134362714	12A2p6	cell line	sgMsh2	134362714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	65	0	0	NA	exonic	Extl1	nonsynonymous SNV	"Extl1:NM_001355493:exon5:c.T275C:p.I92T,Extl1:NM_019578:exon5:c.T1082C:p.I361T"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9974372	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	136332452	12A2p6	cell line	sgMsh2	136332452	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	46	0	0	NA	exonic	Hnrnpr	frameshift deletion	"Hnrnpr:NM_001277122:exon7:c.563delG:p.F190Sfs*18,Hnrnpr:NM_001277123:exon7:c.563delG:p.F190Sfs*18,Hnrnpr:NM_001277121:exon8:c.866delG:p.F291Sfs*18,Hnrnpr:NM_001355182:exon8:c.866delG:p.F291Sfs*18,Hnrnpr:NM_028871:exon8:c.866delG:p.F291Sfs*18"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.492540861	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC	chr4	137543941	12A2p6	cell line	sgMsh2	137543941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	53	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon57:c.A7388G:p.H2463R	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9941256	CAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr4	137548079	12A2p6	cell line	sgMsh2	137548079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	76	0	0	NA	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon63:c.A8217G:p.G2739G	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	GAC	synonymous	NA	NA	NA	NA
SSC	chr4	138289303	12A2p6	cell line	sgMsh2	138289303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	60	0	0	NA	exonic	Kif17	synonymous SNV	"Kif17:NM_001190978:exon7:c.T1296C:p.A432A,Kif17:NM_010623:exon9:c.T2007C:p.A669A"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9963779	CTG	synonymous	TGTGGC	14	TGTGGCTGTGGCTG	NA
SSC	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	56	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr4	140748198	12A2p6	cell line	sgMsh2	140748198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	55	0	0	NA	exonic	Padi4	nonsynonymous SNV	Padi4:NM_011061:exon15:c.T1655C:p.L552P	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	141046782	12A2p6	cell line	sgMsh2	141046782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	33	0	0	NA	exonic	Crocc	nonsynonymous SNV	Crocc:NM_172122:exon5:c.A617G:p.Q206R	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9768695	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
SSC	chr4	141395708	12A2p6	cell line	sgMsh2	141395708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	36	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon4:c.T386C:p.M129T,Clcnka:NM_024412:exon5:c.T386C:p.M129T"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9811351	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	141478931	12A2p6	cell line	sgMsh2	141478931	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	59	0	0	NA	exonic	Spen	frameshift deletion	"Spen:NM_001347235:exon11:c.2315delC:p.P772Hfs*36,Spen:NM_019763:exon12:c.2384delC:p.P795Hfs*36"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr4	141642733	12A2p6	cell line	sgMsh2	141642733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	47	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon2:c.T84C:p.C28C,Plekhm2:NM_001347237:exon2:c.T84C:p.C28C"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9911183	CAC	synonymous	NA	NA	NA	NA
SSC	chr4	143132648	12A2p6	cell line	sgMsh2	143132648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	89	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.T4071C:p.P1357P,Prdm2:NM_001256380:exon8:c.T4071C:p.P1357P"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9995145	TAG	synonymous	NA	NA	NA	NA
SSC	chr4	143895523	12A2p6	cell line	sgMsh2	143895523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	281	0	0	NA	exonic	Pramel11	nonsynonymous SNV	Pramel11:NM_001085414:exon4:c.T1261C:p.Y421H	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.235563021	3	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	144373277	12A2p6	cell line	sgMsh2	144373277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	75	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T917C:p.V306A	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9987181	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	144555004	12A2p6	cell line	sgMsh2	144555004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	109	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.T1217C:p.I406T	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998788	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	144564983	12A2p6	cell line	sgMsh2	144564983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	127	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T152C:p.L51P	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999652	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	144565004	12A2p6	cell line	sgMsh2	144565004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T131C:p.M44T	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999572	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	145062653	12A2p6	cell line	sgMsh2	145062653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	91	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon59:c.T11492C:p.V3831A,Vps13d:NM_001276465:exon60:c.T11489C:p.V3830A"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9995774	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	145154816	12A2p6	cell line	sgMsh2	145154816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	94	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.C4206A:p.H1402Q,Vps13d:NM_001276465:exon19:c.C4206A:p.H1402Q"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9996568	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	145156045	12A2p6	cell line	sgMsh2	145156045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	105	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.T2977C:p.Y993H,Vps13d:NM_001276465:exon19:c.T2977C:p.Y993H"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.99984	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	145170242	12A2p6	cell line	sgMsh2	145170242	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	79	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon9:c.T1107G:p.D369E,Vps13d:NM_001276465:exon10:c.T1107G:p.D369E"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9990285	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr4	148087939	12A2p6	cell line	sgMsh2	148087939	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	15	0	0	NA	exonic	Agtrap	nonsynonymous SNV	Agtrap:NM_009642:exon1:c.A5T:p.E2V	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	1	0.923697	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	148549862	12A2p6	cell line	sgMsh2	148549862	G	A	SNV	Mutect2;Vardict	2	0.046	88	0	0	NA	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon52:c.G7161A:p.M2387I	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.197016344	3	0.9999776	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	148562393	12A2p6	cell line	sgMsh2	148562393	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.365	74	0	0	NA	exonic	Exosc10	synonymous SNV	"Exosc10:NM_001355489:exon4:c.A210G:p.V70V,Exosc10:NM_001355490:exon4:c.A459G:p.V153V,Exosc10:NM_016699:exon4:c.A459G:p.V153V"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9986261	TAT	synonymous	NA	NA	NA	NA
SSC	chr4	148671399	12A2p6	cell line	sgMsh2	148671406	GGGGGGGT	-	Deletion	Mutect2;Vardict	2	0.462	28	0	0	NA	exonic	Gm572	frameshift deletion	Gm572:NM_001085505:exon11:c.1171_1178del:p.G392Sfs*40	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	2	1	NA	NA	GGG	frameshift	G	12	GGGGGGGGGGGG	-8
SSC	chr4	149469049	12A2p6	cell line	sgMsh2	149469049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	73	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A605G:p.D202G,Nmnat1:NM_133435:exon5:c.A605G:p.D202G"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9985275	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	149469055	12A2p6	cell line	sgMsh2	149469055	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	76	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A599T:p.E200V,Nmnat1:NM_133435:exon5:c.A599T:p.E200V"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	153386480	12A2p6	cell line	sgMsh2	153386480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	91	0	0	NA	exonic	Ajap1	nonsynonymous SNV	Ajap1:NM_001099299:exon3:c.T869C:p.V290A	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9995774	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	45	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	1	1	0.9898092	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr4	155996386	12A2p6	cell line	sgMsh2	155996386	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	77	0	0	NA	exonic	Sdf4	nonsynonymous SNV	"Sdf4:NM_001302468:exon2:c.T191C:p.V64A,Sdf4:NM_001302469:exon2:c.T191C:p.V64A,Sdf4:NM_011341:exon2:c.T191C:p.V64A,Sdf4:NM_001302467:exon3:c.T191C:p.V64A"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.11164545	NA	1	0.286958589	3	0.9835094	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	3571771	12A2p6	cell line	sgMsh2	3571771	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	87	0	0	NA	exonic	1700109H08Rik	frameshift deletion	1700109H08Rik:NM_029843:exon1:c.19delA:p.M9Wfs*54	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.959383938	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr5	4060413	12A2p6	cell line	sgMsh2	4060413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	63	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon37:c.A9115G:p.S3039G	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	AAG	nonsynonymous	A	5	AAAAA	NA
SSC	chr5	7305026	12A2p6	cell line	sgMsh2	7305026	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	213	0	0	NA	exonic	Tex47	frameshift deletion	Tex47:NM_027603:exon2:c.206delA:p.Y69Lfs*7	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	-1
SSC	chr5	8698534	12A2p6	cell line	sgMsh2	8698534	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	96	0	0	NA	exonic	Abcb1a	synonymous SNV	Abcb1a:NM_011076:exon11:c.T864C:p.A288A	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.231280057	3	0.9999151	CTA	synonymous	NA	NA	NA	NA
SSC	chr5	9445497	12A2p6	cell line	sgMsh2	9445497	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.196	158	0	0	NA	exonic	Elapor2	nonsynonymous SNV	"Elapor2:NM_001359885:exon15:c.A1961G:p.K654R,Elapor2:NM_001359886:exon15:c.A1961G:p.K654R,Elapor2:NM_001359884:exon16:c.A2300G:p.K767R,Elapor2:NM_172706:exon16:c.A2300G:p.K767R"	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.839460946	1	0.9799744	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	13565787	12A2p6	cell line	sgMsh2	13565787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	123	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon11:c.A1177G:p.K393E,Sema3a:NM_001243072:exon12:c.A1177G:p.K393E,Sema3a:NM_001243073:exon12:c.A1177G:p.K393E"	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999541	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	14681131	12A2p6	cell line	sgMsh2	14681131	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	108	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.G9646T:p.A3216S,Pclo:NM_011995:exon6:c.G9646T:p.A3216S"	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998701	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	14712864	12A2p6	cell line	sgMsh2	14712864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	130	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.C11350T:p.P3784S,Pclo:NM_011995:exon7:c.C11350T:p.P3784S"	5qA1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	20611186	12A2p6	cell line	sgMsh2	20611186	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	81	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon18:c.A3010C:p.R1004R,Magi2:NM_015823:exon19:c.A3052C:p.R1018R,Magi2:NM_001170746:exon20:c.A3541C:p.R1181R"	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9991543	GAG	synonymous	NA	NA	NA	NA
SSC	chr5	20896303	12A2p6	cell line	sgMsh2	20896303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	168	0	0	NA	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2238C:p.P746P	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.999994	CAG	synonymous	NA	NA	NA	NA
SSC	chr5	20998619	12A2p6	cell line	sgMsh2	20998619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	174	0	0	NA	exonic	Ptpn12	nonsynonymous SNV	"Ptpn12:NM_001356591:exon12:c.A803G:p.H268R,Ptpn12:NM_001356592:exon13:c.A803G:p.H268R,Ptpn12:NM_011203:exon13:c.A1160G:p.H387R,Ptpn12:NM_001356590:exon14:c.A1202G:p.H401R"	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.895139478	1	0.9993858	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	21288609	12A2p6	cell line	sgMsh2	21288609	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	84	0	0	NA	exonic	Gsap	nonsynonymous SNV	"Gsap:NM_001359876:exon27:c.A2150C:p.N717T,Gsap:NM_175437:exon28:c.A2243C:p.N748T"	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	AAT	nonsynonymous	A	5	AAAAA	NA
SSC	chr5	21316965	12A2p6	cell line	sgMsh2	21316965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	67	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon9:c.T1060C:p.L354L	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9464697	AAG	synonymous	NA	NA	NA	NA
SSC	chr5	22034612	12A2p6	cell line	sgMsh2	22034612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	103	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon20:c.T2656C:p.F886L	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9993534	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	22526395	12A2p6	cell line	sgMsh2	22526395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	141	0	0	NA	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon8:c.A792T:p.A264A	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	TTG	synonymous	NA	NA	NA	NA
SSC	chr5	23492276	12A2p6	cell line	sgMsh2	23492276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	123	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon15:c.A1731C:p.E577D	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999541	AAG	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
SSC	chr5	23805374	12A2p6	cell line	sgMsh2	23805374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	88	0	0	NA	exonic	Rint1	nonsynonymous SNV	Rint1:NM_177323:exon5:c.A580G:p.M194V	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	23844024	12A2p6	cell line	sgMsh2	23844024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	172	0	0	NA	exonic	Tomm7	nonsynonymous SNV	Tomm7:NM_025394:exon1:c.A50C:p.K17T	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.75808463	2	0.6455031	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	24377696	12A2p6	cell line	sgMsh2	24377696	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	95	0	0	NA	exonic	Nos3	nonsynonymous SNV	Nos3:NM_008713:exon15:c.C1921A:p.L641M	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	73	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.8752762	CAC	synonymous	NA	NA	NA	NA
SSC	chr5	24416225	12A2p6	cell line	sgMsh2	24416225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	155	0	0	NA	exonic	Asic3	nonsynonymous SNV	"Asic3:NM_001310474:exon4:c.T942G:p.C314W,Asic3:NM_183000:exon4:c.T942G:p.C314W"	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.999995	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	24477100	12A2p6	cell line	sgMsh2	24477100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	151	0	0	NA	exonic	Agap3	nonsynonymous SNV	"Agap3:NM_001256431:exon5:c.T593C:p.V198A,Agap3:NM_001359881:exon5:c.T593C:p.V198A,Agap3:NM_139153:exon5:c.T593C:p.V198A"	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999934	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	24593719	12A2p6	cell line	sgMsh2	24593719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	95	0	0	NA	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon10:c.T1091C:p.V364A	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9982362	CAC	nonsynonymous	CCTCCA	13	CCTCCACCTCCAC	NA
SSC	chr5	25275725	12A2p6	cell line	sgMsh2	25275725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	141	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon58:c.A14525G:p.H4842R	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9991588	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	25298887	12A2p6	cell line	sgMsh2	25298887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	159	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon43:c.A11422G:p.S3808G	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9615458	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	25366098	12A2p6	cell line	sgMsh2	25366098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	51	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon15:c.T2613C:p.S871S	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9099621	CAC	synonymous	NA	NA	NA	NA
SSC	chr5	25372985	12A2p6	cell line	sgMsh2	25372985	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	100	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon14:c.T2295A:p.S765S	5qA3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	AAG	synonymous	NA	NA	NA	NA
SSC	chr5	26036027	12A2p6	cell line	sgMsh2	26036027	G	A	SNV	Mutect2;MuSe;Vardict	3	0.08	547	0	0	NA	exonic	Speer4a	synonymous SNV	Speer4a:NM_029376:exon4:c.C466T:p.L156L	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.342637121	3	0.9999996	AGC	synonymous	NA	NA	NA	NA
SSC	chr5	26257866	12A2p6	cell line	sgMsh2	26257866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.229	571	0	0	NA	exonic	Gm7361	synonymous SNV	Gm7361:NM_001281527:exon1:c.T105C:p.N35N	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	1	ATG	synonymous	NA	NA	NA	NA
SSC	chr5	29765555	12A2p6	cell line	sgMsh2	29765555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	162	0	0	NA	exonic	Dnajb6	synonymous SNV	"Dnajb6:NM_001037940:exon7:c.T531C:p.S177S,Dnajb6:NM_001127367:exon7:c.T528C:p.S176S,Dnajb6:NM_001359198:exon7:c.T531C:p.S177S,Dnajb6:NM_001378835:exon7:c.T531C:p.S177S,Dnajb6:NM_011847:exon7:c.T531C:p.S177S"	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999969	CTT	synonymous	NA	NA	NA	NA
SSC	chr5	30380883	12A2p6	cell line	sgMsh2	30380883	C	-	Deletion	Mutect2;Vardict	2	0.074	78	0	0	NA	exonic	Otof	frameshift deletion	"Otof:NM_001286421:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_001313767:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_031875:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_001100395:exon29:c.3541delG:p.V1181Yfs*4"	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.316939337	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr5	30488537	12A2p6	cell line	sgMsh2	30488537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	141	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon5:c.T386C:p.L129P	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9989696	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	30920618	12A2p6	cell line	sgMsh2	30920618	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	110	0	0	NA	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon8:c.T2720C:p.V907A	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	30926792	12A2p6	cell line	sgMsh2	30926792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	113	0	0	NA	exonic	Khk	nonsynonymous SNV	"Khk:NM_001310524:exon3:c.G314T:p.S105I,Khk:NM_001349066:exon3:c.G314T:p.S105I"	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9932144	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.508	88	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
SSC	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	106	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	32331276	12A2p6	cell line	sgMsh2	32331276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	195	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon42:c.A2903G:p.Y968C	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.73666981	2	0.09298399	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	121	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9996726	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	32829527	12A2p6	cell line	sgMsh2	32829527	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	182	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.A2623G:p.K875E	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.167035596	3	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	32887005	12A2p6	cell line	sgMsh2	32887005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	170	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001170567:exon8:c.A440G:p.K147R,Depdc5:NM_177786:exon8:c.A440G:p.K147R,Depdc5:NM_001025426:exon9:c.A440G:p.K147R"	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999982	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	33026582	12A2p6	cell line	sgMsh2	33026582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	150	0	0	NA	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.A128C:p.N43T	5qB1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.999993	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	34794116	12A2p6	cell line	sgMsh2	34794116	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	142	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon4:c.T420A:p.D140E	5qB2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9998424	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	34966123	12A2p6	cell line	sgMsh2	34966123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	163	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1249G:p.T417A	5qB2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999971	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	34966139	12A2p6	cell line	sgMsh2	34966139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	158	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1265G:p.D422G	5qB2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9999449	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	35280496	12A2p6	cell line	sgMsh2	35280496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	43	0	0	NA	exonic	Adra2c	nonsynonymous SNV	Adra2c:NM_007418:exon1:c.T611C:p.L204P	5qB2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9883096	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	36809005	12A2p6	cell line	sgMsh2	36809005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	51	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon17:c.A2843G:p.K948R	5qB3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9932568	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	51472896	12A2p6	cell line	sgMsh2	51472896	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	222	0	0	NA	exonic	Ppargc1a	synonymous SNV	Ppargc1a:NM_008904:exon9:c.C1878A:p.P626P	5qC1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	4.86E-08	AGG	synonymous	NA	NA	NA	NA
SSC	chr5	57720612	12A2p6	cell line	sgMsh2	57720612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	94	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310606:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310608:exon1:c.T1508C:p.V503A,Pcdh7:NM_018764:exon1:c.T1508C:p.V503A"	5qC1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9995197	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	62636013	12A2p6	cell line	sgMsh2	62636013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	70	0	0	NA	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon26:c.T4089C:p.N1363N	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9957476	TAT	synonymous	T	5	TTTTT	NA
SSC	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	143	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999886	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	64103865	12A2p6	cell line	sgMsh2	64103865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	120	0	0	NA	exonic	Pgm2	nonsynonymous SNV	"Pgm2:NM_025700:exon6:c.G701T:p.G234V,Pgm2:NM_001356964:exon7:c.G515T:p.G172V"	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999435	GGT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	65141360	12A2p6	cell line	sgMsh2	65141360	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	107	0	0	NA	exonic	Klhl5	frameshift deletion	"Klhl5:NM_001347355:exon2:c.61delA:p.M23Wfs*4,Klhl5:NM_001359401:exon2:c.481delA:p.M163Wfs*4,Klhl5:NM_175174:exon2:c.481delA:p.M163Wfs*4"	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.839460946	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr5	65416892	12A2p6	cell line	sgMsh2	65416892	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	112	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon11:c.C1307T:p.A436V	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9996135	GGC	nonsynonymous	GGCT	8	GGCTGGCT	NA
SSC	chr5	65427529	12A2p6	cell line	sgMsh2	65427529	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	153	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon2:c.G49A:p.G17R	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.184167452	3	1.72E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	66684780	12A2p6	cell line	sgMsh2	66684780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	92	0	0	NA	exonic	Uchl1	synonymous SNV	Uchl1:NM_011670:exon8:c.A534T:p.R178R	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.9995201	GAA	synonymous	NA	NA	NA	NA
SSC	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	125	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	69559600	12A2p6	cell line	sgMsh2	69559600	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	205	0	0	NA	exonic	Guf1	nonsynonymous SNV	"Guf1:NM_001310631:exon5:c.G504T:p.Q168H,Guf1:NM_172711:exon5:c.G504T:p.Q168H"	5qC3.1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	72108379	12A2p6	cell line	sgMsh2	72108379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	135	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon6:c.A616G:p.I206V,Gabrb1:NM_001370968:exon7:c.A517G:p.I173V"	5qC3.2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.740952774	2	0.7181788	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	72763770	12A2p6	cell line	sgMsh2	72763770	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	50	0	0	NA	exonic	Tec	nonsynonymous SNV	"Tec:NM_001113461:exon14:c.C1195T:p.H399Y,Tec:NM_001113464:exon14:c.C1261T:p.H421Y,Tec:NM_013689:exon14:c.C952T:p.H318Y,Tec:NM_001113460:exon15:c.C1261T:p.H421Y"	5qC3.2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9811511	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	73520210	12A2p6	cell line	sgMsh2	73520210	A	-	Deletion	Strelka2;Vardict	2	0.2192	73	0	0	NA	exonic	Dcun1d4	frameshift deletion	"Dcun1d4:NM_001190733:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_178896:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_001190734:exon5:c.273delA:p.S94Afs*14"	5qC3.3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.938825711	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC	chr5	73534610	12A2p6	cell line	sgMsh2	73534610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	157	0	0	NA	exonic	Dcun1d4	nonsynonymous SNV	"Dcun1d4:NM_001190733:exon7:c.T419C:p.V140A,Dcun1d4:NM_178896:exon7:c.T419C:p.V140A,Dcun1d4:NM_001190734:exon8:c.T461C:p.V154A"	5qC3.3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999957	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	91	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	75964693	12A2p6	cell line	sgMsh2	75964693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	112	0	0	NA	exonic	Kdr	synonymous SNV	"Kdr:NM_001363216:exon9:c.T1143C:p.V381V,Kdr:NM_010612:exon9:c.T1143C:p.V381V"	5qC3.3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7156436	CAA	synonymous	NA	NA	NA	NA
SSC	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	89	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
SSC	chr5	81329783	12A2p6	cell line	sgMsh2	81329783	G	A	SNV	Mutect2;Vardict	2	0.333	7	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001347368:exon4:c.G82A:p.A28T,Adgrl3:NM_001359830:exon4:c.G82A:p.A28T,Adgrl3:NM_001359831:exon4:c.G82A:p.A28T,Adgrl3:NM_001347367:exon5:c.G82A:p.A28T,Adgrl3:NM_001347369:exon5:c.G82A:p.A28T,Adgrl3:NM_001359828:exon5:c.G82A:p.A28T,Adgrl3:NM_001359832:exon5:c.G82A:p.A28T,Adgrl3:NM_001359834:exon5:c.G82A:p.A28T,Adgrl3:NM_198702:exon5:c.G82A:p.A28T"	5qD	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	0.8730352	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	81766205	12A2p6	cell line	sgMsh2	81766205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	132	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon21:c.T3413C:p.I1138T,Adgrl3:NM_001347371:exon22:c.T3428C:p.I1143T,Adgrl3:NM_001347368:exon23:c.T3632C:p.I1211T,Adgrl3:NM_001359826:exon23:c.T2942C:p.I981T,Adgrl3:NM_001359832:exon23:c.T3617C:p.I1206T,Adgrl3:NM_001359833:exon23:c.T3452C:p.I1151T,Adgrl3:NM_001347369:exon24:c.T3632C:p.I1211T,Adgrl3:NM_001359830:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359831:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359834:exon24:c.T3644C:p.I1215T,Adgrl3:NM_001347367:exon25:c.T3659C:p.I1220T,Adgrl3:NM_001359828:exon25:c.T3659C:p.I1220T,Adgrl3:NM_198702:exon25:c.T3659C:p.I1220T"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.9999674	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	83294647	12A2p6	cell line	sgMsh2	83294647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon6:c.T578C:p.I193T	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9989588	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	84331605	12A2p6	cell line	sgMsh2	84331605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	142	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon3:c.C539A:p.A180D	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999877	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	86118082	12A2p6	cell line	sgMsh2	86118082	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	0	0	NA	exonic	Uba6	stopgain	Uba6:NM_172712:exon32:c.G2965T:p.G989X	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	107	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	86926248	12A2p6	cell line	sgMsh2	86926248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	157	0	0	NA	exonic	Ugt2b1	nonsynonymous SNV	Ugt2b1:NM_152811:exon1:c.A251C:p.D84A	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9895775	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	87254427	12A2p6	cell line	sgMsh2	87254427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	245	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A344C:p.N115T	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	1.06E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	141	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	87843547	12A2p6	cell line	sgMsh2	87843547	T	-	Deletion	Strelka2;Vardict	2	0.2188	128	0	0	NA	exonic	Prr27	frameshift deletion	"Prr27:NM_028648:exon4:c.993delT:p.Y334Tfs*4,Prr27:NM_001163551:exon5:c.1017delT:p.Y342Tfs*4"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.937112525	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC	chr5	87979950	12A2p6	cell line	sgMsh2	87979950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	222	0	0	NA	exonic	Cabs1	synonymous SNV	Cabs1:NM_027631:exon1:c.A459G:p.E153E	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	4.86E-08	AAG	synonymous	NA	NA	NA	NA
SSC	chr5	88328658	12A2p6	cell line	sgMsh2	88328658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	193	0	0	NA	exonic	Prol1	synonymous SNV	Prol1:NM_008644:exon3:c.G906A:p.K302K	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9733186	AGT	synonymous	NA	NA	NA	NA
SSC	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	80	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	0.9990936	AAG	synonymous	NA	NA	NA	NA
SSC	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	89	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	0.9995145	AAC	synonymous	A	5	AAAAA	NA
SSC	chr5	90365969	12A2p6	cell line	sgMsh2	90365969	-	G	Insertion	Strelka2;Vardict	2	0.3077	13	0	0	NA	exonic	Ankrd17	frameshift insertion	"Ankrd17:NM_030886:exon1:c.78dupC:p.A27Rfs*100,Ankrd17:NM_198010:exon1:c.78dupC:p.A27Rfs*100"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GCG	frameshift	"CCG, G"	"29, 8"	"CCGCCGCCGACCTCCGCCGCCGCCGCCGC, GGGGGGGG"	1
SSC	chr5	90606874	12A2p6	cell line	sgMsh2	90606874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	119	0	0	NA	exonic	Rassf6	nonsynonymous SNV	"Rassf6:NM_001310656:exon7:c.T544C:p.S182P,Rassf6:NM_028478:exon7:c.T583C:p.S195P"	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9985642	GAT	nonsynonymous	GATG	8	GATGGATG	NA
SSC	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	109	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	0.9998788	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	91594162	12A2p6	cell line	sgMsh2	91594162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	128	0	0	NA	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.C388T:p.P130S	5qE2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.9364585	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	277	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	2.05E-09	CTG	synonymous	NA	NA	NA	NA
SSC	chr5	92627441	12A2p6	cell line	sgMsh2	92627441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	79	0	0	NA	exonic	Ccdc158	synonymous SNV	"Ccdc158:NM_001360018:exon21:c.T2916C:p.S972S,Ccdc158:NM_177230:exon21:c.T2904C:p.S968S"	5qE2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990285	CAC	synonymous	NA	NA	NA	NA
SSC	chr5	92941473	12A2p6	cell line	sgMsh2	92941473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	93	0	0	NA	exonic	Shroom3	nonsynonymous SNV	"Shroom3:NM_001077595:exon4:c.A1556G:p.E519G,Shroom3:NM_001077596:exon4:c.A1556G:p.E519G,Shroom3:NM_015756:exon5:c.A2081G:p.E694G"	5qE2	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	96534932	12A2p6	cell line	sgMsh2	96534932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	94	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon4:c.A287G:p.H96R	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996568	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	96555302	12A2p6	cell line	sgMsh2	96555302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	77	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon9:c.A923G:p.D308G	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.71525499	2	0.639825	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	96642604	12A2p6	cell line	sgMsh2	96642604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	119	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon23:c.T2836C:p.Y946H	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	96700257	12A2p6	cell line	sgMsh2	96700257	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	81	0	0	NA	exonic	Fras1	frameshift deletion	Fras1:NM_175473:exon39:c.5325delG:p.D1777Ifs*99	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC	chr5	96758230	12A2p6	cell line	sgMsh2	96758230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	85	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon62:c.A9492G:p.P3164P	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8707376	CAC	synonymous	NA	NA	NA	NA
SSC	chr5	96776630	12A2p6	cell line	sgMsh2	96776630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	106	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon71:c.A10929C:p.I3643I	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9988323	TAC	synonymous	NA	NA	NA	NA
SSC	chr5	97455677	12A2p6	cell line	sgMsh2	97455677	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	196	0	0	NA	exonic	Gk2	nonsynonymous SNV	Gk2:NM_010294:exon1:c.T1301G:p.L434R	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.86515873	1	0.9979135	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	98275270	12A2p6	cell line	sgMsh2	98275270	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	65	0	0	NA	exonic	Fgf5	synonymous SNV	Fgf5:NM_010203:exon3:c.C513A:p.T171T	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	CCT	synonymous	NA	NA	NA	NA
SSC	chr5	98872157	12A2p6	cell line	sgMsh2	98872157	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	exonic	Bmp3	nonsynonymous SNV	"Bmp3:NM_001310677:exon2:c.A438C:p.E146D,Bmp3:NM_173404:exon2:c.A438C:p.E146D"	5qE3	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.256977841	3	0.9999893	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	90	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	100806870	12A2p6	cell line	sgMsh2	100806870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	47	0	0	NA	exonic	Abraxas1	synonymous SNV	Abraxas1:NM_172405:exon8:c.A702G:p.E234E	5qE4	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9911183	GTT	synonymous	NA	NA	NA	NA
SSC	chr5	101917543	12A2p6	cell line	sgMsh2	101917543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	53	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon23:c.C3758T:p.P1253L	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9941256	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	104968246	12A2p6	cell line	sgMsh2	104968246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	129	0	0	NA	exonic	Abcg3	nonsynonymous SNV	Abcg3:NM_030239:exon7:c.T721C:p.S241P	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9850228	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	105016630	12A2p6	cell line	sgMsh2	105016630	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	332	0	0	NA	exonic	Gbp8	nonsynonymous SNV	Gbp8:NM_029509:exon8:c.A1126G:p.S376G	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.205582272	3	1	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	105236087	12A2p6	cell line	sgMsh2	105236087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	276	0	0	NA	exonic	Gbp10	synonymous SNV	Gbp10:NM_001039646:exon2:c.T48C:p.N16N	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	2.12E-09	CAT	synonymous	NA	NA	NA	NA
SSC	chr5	105606595	12A2p6	cell line	sgMsh2	105606595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	144	0	0	NA	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A235G:p.T79A	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999893	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	106636730	12A2p6	cell line	sgMsh2	106636730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	241	0	0	NA	exonic	Zfp644	synonymous SNV	"Zfp644:NM_001363323:exon2:c.T1875C:p.S625S,Zfp644:NM_001363320:exon3:c.T1950C:p.S650S,Zfp644:NM_001363321:exon3:c.T1950C:p.S650S,Zfp644:NM_001363322:exon3:c.T1917C:p.S639S,Zfp644:NM_026856:exon3:c.T1950C:p.S650S,Zfp644:NM_001363319:exon4:c.T1950C:p.S650S,Zfp644:NM_001363318:exon6:c.T1950C:p.S650S"	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9999981	TAC	synonymous	NA	NA	NA	NA
SSC	chr5	107485797	12A2p6	cell line	sgMsh2	107485797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	178	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon7:c.T871A:p.L291M	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.753801666	2	0.7165141	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	107497764	12A2p6	cell line	sgMsh2	107497764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	143	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon12:c.C1484T:p.A495V	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	0.818046126	1	0.9327372	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	107507151	12A2p6	cell line	sgMsh2	107507151	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	0	0	NA	exonic	Btbd8	stopgain	"Btbd8:NM_001384112:exon6:c.C1279T:p.R427X,Btbd8:NM_001378266:exon17:c.C2815T:p.R939X"	5qE5	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	107901925	12A2p6	cell line	sgMsh2	107901925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	177	0	0	NA	exonic	Rpl5	nonsynonymous SNV	Rpl5:NM_016980:exon2:c.T59C:p.F20S	5qF	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999989	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	63	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	108745687	12A2p6	cell line	sgMsh2	108745687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	114	0	0	NA	exonic	Rnf212	nonsynonymous SNV	Rnf212:NM_001362887:exon9:c.T548C:p.I183T	5qF	chr5-3344388-108786463	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999143	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	109452967	12A2p6	cell line	sgMsh2	109452967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	673	0	0	NA	exonic	Vmn2r17	synonymous SNV	"Vmn2r17:NM_001104628:exon6:c.T2130C:p.C710C,Vmn2r17:NM_001385190:exon6:c.T2127C:p.C709C"	5qF	chr5-108794879-110007284	6	3	3	0.96	4.11164545	NA	2	1	1	1	GTG	synonymous	NA	NA	NA	NA
SSC	chr5	110788235	12A2p6	cell line	sgMsh2	110788235	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.192	26	0	0	NA	exonic	Ulk1	nonsynonymous SNV	"Ulk1:NM_001347394:exon23:c.T2407A:p.C803S,Ulk1:NM_009469:exon23:c.T2389A:p.C797S"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	8.68E-06	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	110866346	12A2p6	cell line	sgMsh2	110866346	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	99	0	0	NA	exonic	Chek2	synonymous SNV	"Chek2:NM_001363308:exon10:c.T474G:p.P158P,Chek2:NM_016681:exon11:c.T1191G:p.P397P"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.8486594	CTG	synonymous	NA	NA	NA	NA
SSC	chr5	113577320	12A2p6	cell line	sgMsh2	113577320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	56	0	0	NA	exonic	Wscd2	nonsynonymous SNV	Wscd2:NM_177292:exon7:c.A1220G:p.H407R	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.633878673	2	0.8254533	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	114248224	12A2p6	cell line	sgMsh2	114248224	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	29	0	0	NA	exonic	Acacb	nonsynonymous SNV	Acacb:NM_133904:exon49:c.A6818G:p.E2273G	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	2	1	1	0.9696926	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	114950753	12A2p6	cell line	sgMsh2	114950753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	67	0	0	NA	exonic	Hnf1a	nonsynonymous SNV	Hnf1a:NM_009327:exon9:c.A1703T:p.Q568L	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
SSC	chr5	115571482	12A2p6	cell line	sgMsh2	115571482	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	129	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon2:c.G92T:p.S31I	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	0.9999669	AGT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	77	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	2	1	1	0.998884	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	116014936	12A2p6	cell line	sgMsh2	116014936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	283	0	0	NA	exonic	Prkab1	nonsynonymous SNV	Prkab1:NM_031869:exon6:c.A713G:p.H238R	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9955548	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	78	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9989588	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	117371125	12A2p6	cell line	sgMsh2	117371125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	96	0	0	NA	exonic	Wsb2	nonsynonymous SNV	Wsb2:NM_021539:exon4:c.T464C:p.V155A	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	118201149	12A2p6	cell line	sgMsh2	118201149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	83	0	0	NA	exonic	Rnft2	nonsynonymous SNV	"Rnft2:NM_001109902:exon10:c.A1202G:p.Q401R,Rnft2:NM_172998:exon11:c.A1205G:p.Q402R"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9992638	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	121534348	12A2p6	cell line	sgMsh2	121534348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	115	0	0	NA	exonic	Mapkapk5	nonsynonymous SNV	Mapkapk5:NM_010765:exon7:c.A566G:p.Y189C	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	122461781	12A2p6	cell line	sgMsh2	122461781	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	158	0	0	NA	exonic	Atp2a2	frameshift deletion	"Atp2a2:NM_001110140:exon13:c.1546delG:p.A516Lfs*20,Atp2a2:NM_009722:exon13:c.1546delG:p.A516Lfs*20"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.963666902	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC	chr5	122987680	12A2p6	cell line	sgMsh2	122987680	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	33	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001003953:exon2:c.C160A:p.H54N,Kdm2b:NM_001378863:exon2:c.C142A:p.H48N"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.385466761	2	0.7758749	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	123143390	12A2p6	cell line	sgMsh2	123143390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	56	0	0	NA	exonic	Setd1b	nonsynonymous SNV	Setd1b:NM_001040398:exon3:c.A206G:p.D69G	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	2	1	1	0.9952245	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	123583549	12A2p6	cell line	sgMsh2	123583549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	72	0	0	NA	exonic	Clip1	nonsynonymous SNV	"Clip1:NM_001359222:exon19:c.A3251G:p.D1084G,Clip1:NM_001291229:exon20:c.A3368G:p.D1123G,Clip1:NM_001359220:exon20:c.A3584G:p.D1195G,Clip1:NM_001359221:exon20:c.A3356G:p.D1119G,Clip1:NM_019765:exon20:c.A3596G:p.D1199G,Clip1:NM_001347468:exon21:c.A3377G:p.D1126G"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9969139	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	113	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	60	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9963779	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	124292354	12A2p6	cell line	sgMsh2	124292354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	119	0	0	NA	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon10:c.T1778G:p.L593R,Mphosph9:NM_001277867:exon11:c.T1868G:p.L623R"	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9576077	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	124803824	12A2p6	cell line	sgMsh2	124803824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	121	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon50:c.A8483G:p.H2828R	5qF	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	125415139	12A2p6	cell line	sgMsh2	125415139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	96	0	0	NA	exonic	Dhx37	nonsynonymous SNV	Dhx37:NM_203319:exon27:c.T3395C:p.L1132P	5qG1.1	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997012	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	125778827	12A2p6	cell line	sgMsh2	125778827	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.351	37	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon6:c.T1622C:p.V541A	5qG1.1	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	2	1	1	0.9823777	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	127604164	12A2p6	cell line	sgMsh2	127604164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	90	0	0	NA	exonic	Slc15a4	nonsynonymous SNV	Slc15a4:NM_133895:exon4:c.A1039C:p.S347R	5qG1.2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	127784717	12A2p6	cell line	sgMsh2	127784717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	138	0	0	NA	exonic	Tmem132d	nonsynonymous SNV	Tmem132d:NM_172885:exon9:c.A2339G:p.K780R	5qG1.2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999605	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	129595427	12A2p6	cell line	sgMsh2	129595427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	93	0	0	NA	exonic	Mmp17	nonsynonymous SNV	Mmp17:NM_011846:exon4:c.T442G:p.S148A	5qG1.3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9993296	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	129908713	12A2p6	cell line	sgMsh2	129908713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	24	0	0	NA	exonic	Nupr1l	nonsynonymous SNV	"Nupr1l:NM_001359308:exon1:c.A122G:p.Y41C,Nupr1l:NM_026916:exon1:c.A122G:p.Y41C"	5qG1.3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9275003	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
SSC	chr5	130877774	12A2p6	cell line	sgMsh2	130877774	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	67	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1555G:p.T519A	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9464697	GTG	nonsynonymous	GTG	8	GTGGTGGT	NA
SSC	chr5	131306577	12A2p6	cell line	sgMsh2	131306577	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	95	0	0	NA	exonic	Galnt17	synonymous SNV	Galnt17:NM_145218:exon1:c.A24G:p.K8K	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.231280057	3	0.9999051	CTT	synonymous	NA	NA	NA	NA
SSC	chr5	134196572	12A2p6	cell line	sgMsh2	134196572	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	111	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon5:c.A500T:p.E167V,Gtf2ird2:NM_053266:exon5:c.A500T:p.E167V"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998945	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	81	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9991543	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	151	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9923828	TAC	synonymous	NA	NA	NA	NA
SSC	chr5	134688355	12A2p6	cell line	sgMsh2	134688355	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	40	0	0	NA	exonic	Limk1	frameshift deletion	Limk1:NM_010717:exon1:c.41delG:p.R14Lfs*27	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.728103882	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC	chr5	134915130	12A2p6	cell line	sgMsh2	134915130	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	143	0	0	NA	exonic	Cldn13	nonsynonymous SNV	Cldn13:NM_020504:exon1:c.A200G:p.D67G	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999886	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	135217642	12A2p6	cell line	sgMsh2	135217642	T	-	Deletion	Strelka2;Vardict	2	0.2176	170	0	0	NA	exonic	Baz1b	frameshift deletion	Baz1b:NM_011714:exon7:c.1944delT:p.L650Cfs*2	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.931972969	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr5	135412712	12A2p6	cell line	sgMsh2	135412712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	93	0	0	NA	exonic	Hip1	nonsynonymous SNV	"Hip1:NM_001382848:exon30:c.T2834C:p.V945A,Hip1:NM_146001:exon30:c.T2936C:p.V979A"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.591049033	2	0.9924565	CAC	nonsynonymous	TCCAGC	12	TCCAGCTCCAGC	NA
SSC	chr5	135854387	12A2p6	cell line	sgMsh2	135854387	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	74	0	0	NA	exonic	Srrm3	synonymous SNV	Srrm3:NM_021403:exon7:c.C595T:p.L199L	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9986261	CCT	synonymous	C	5	CCCCC	NA
SSC	chr5	135911218	12A2p6	cell line	sgMsh2	135911218	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	100	0	0	NA	exonic	Ywhag	frameshift deletion	Ywhag:NM_018871:exon2:c.521delG:p.G174Afs*37	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	163	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9907313	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	136064128	12A2p6	cell line	sgMsh2	136064128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	101	0	0	NA	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A707G:p.H236R,Upk3bl:NM_027158:exon6:c.A710G:p.H237R"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9995313	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr5	137328533	12A2p6	cell line	sgMsh2	137328533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	51	0	0	NA	exonic	Slc12a9	synonymous SNV	"Slc12a9:NM_031406:exon5:c.T661C:p.L221L,Slc12a9:NM_001359611:exon6:c.T661C:p.L221L"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.9441303	AAC	synonymous	NA	NA	NA	NA
SSC	chr5	137400012	12A2p6	cell line	sgMsh2	137400012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	251	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon66:c.T12757C:p.C4253R	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.9986442	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	137484567	12A2p6	cell line	sgMsh2	137484567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	exonic	Epo	synonymous SNV	"Epo:NM_001312875:exon3:c.T162C:p.G54G,Epo:NM_007942:exon3:c.T162C:p.G54G"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9890559	AAC	synonymous	NA	NA	NA	NA
SSC	chr5	137607443	12A2p6	cell line	sgMsh2	137607443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon5:c.G687A:p.K229K	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9988061	TCT	synonymous	NA	NA	NA	NA
SSC	chr5	138562544	12A2p6	cell line	sgMsh2	138562544	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	187	0	0	NA	exonic	1700123K08Rik	synonymous SNV	1700123K08Rik:NM_029693:exon5:c.A588G:p.L196L	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.141337812	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
SSC	chr5	139223600	12A2p6	cell line	sgMsh2	139223600	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.136	111	0	0	NA	exonic	Sun1	synonymous SNV	"Sun1:NM_001256118:exon2:c.T84C:p.S28S,Sun1:NM_001256115:exon3:c.T84C:p.S28S,Sun1:NM_001256116:exon3:c.T84C:p.S28S,Sun1:NM_001256117:exon3:c.T84C:p.S28S,Sun1:NM_001359494:exon3:c.T84C:p.S28S,Sun1:NM_001359496:exon3:c.T84C:p.S28S,Sun1:NM_024451:exon3:c.T84C:p.S28S"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.582483105	2	0.9983818	GTT	synonymous	NA	NA	NA	NA
SSC	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	139706886	12A2p6	cell line	sgMsh2	139706886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	74	0	0	NA	exonic	Micall2	nonsynonymous SNV	Micall2:NM_174850:exon17:c.T2980G:p.S994A	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.740952774	1	0.5358728	GAC	nonsynonymous	GGACTT	12	GGACTTGGACTT	NA
SSC	chr5	139765044	12A2p6	cell line	sgMsh2	139765044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	26	0	0	NA	exonic	Ints1	nonsynonymous SNV	Ints1:NM_026748:exon18:c.A2603G:p.Q868R	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9234728	CTG	nonsynonymous	G	5	GGGGG	NA
SSC	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	135	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999801	CTT	synonymous	NA	NA	NA	NA
SSC	chr5	139972625	12A2p6	cell line	sgMsh2	139972625	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.29	116	0	0	NA	exonic	Elfn1	frameshift insertion	"Elfn1:NM_001384186:exon2:c.1384dupA:p.T464Nfs*5,Elfn1:NM_175522:exon2:c.1384dupA:p.T464Nfs*5"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
SSC	chr5	140193962	12A2p6	cell line	sgMsh2	140193962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	105	0	0	NA	exonic	Mad1l1	synonymous SNV	"Mad1l1:NM_001359025:exon11:c.T1170C:p.H390H,Mad1l1:NM_010752:exon11:c.T1170C:p.H390H"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.99984	CAT	synonymous	NA	NA	NA	NA
SSC	chr5	140427451	12A2p6	cell line	sgMsh2	140427451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	86	0	0	NA	exonic	Eif3b	synonymous SNV	Eif3b:NM_133916:exon6:c.C1008A:p.T336T	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	2	1	1	0.9994021	CCT	synonymous	TACC	9	TACCTACCT	NA
SSC	chr5	140712706	12A2p6	cell line	sgMsh2	140712706	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	75	0	0	NA	exonic	Brat1	frameshift deletion	"Brat1:NM_001276287:exon5:c.767delC:p.Q258Rfs*5,Brat1:NM_181066:exon5:c.632delC:p.Q213Rfs*5"	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.997930614	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr5	145345370	12A2p6	cell line	sgMsh2	145345370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	337	0	0	NA	exonic	Cyp3a57	synonymous SNV	Cyp3a57:NM_001100180:exon1:c.T24C:p.S8S	5qG2	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	1.02E-09	CTA	synonymous	NA	NA	NA	NA
SSC	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	209	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr5	146583706	12A2p6	cell line	sgMsh2	146583706	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	111	0	0	NA	exonic	Gpr12	synonymous SNV	"Gpr12:NM_008151:exon1:c.T405G:p.T135T,Gpr12:NM_001010941:exon2:c.T405G:p.T135T,Gpr12:NM_001359055:exon2:c.T405G:p.T135T,Gpr12:NM_001359056:exon2:c.T405G:p.T135T,Gpr12:NM_001359057:exon2:c.T405G:p.T135T"	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998945	CAG	synonymous	NA	NA	NA	NA
SSC	chr5	149593124	12A2p6	cell line	sgMsh2	149593124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	92	0	0	NA	exonic	Wdr95	nonsynonymous SNV	Wdr95:NM_029440:exon16:c.T1003C:p.F335L	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr5	150070360	12A2p6	cell line	sgMsh2	150070360	T	-	Deletion	Mutect2;Vardict	2	0.072	56	0	0	NA	exonic	Rxfp2	frameshift deletion	"Rxfp2:NM_001289564:exon16:c.1844delT:p.V615Afs*26,Rxfp2:NM_001289566:exon16:c.1886delT:p.V629Afs*26,Rxfp2:NM_080468:exon17:c.1916delT:p.V639Afs*26"	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.308373409	NA	NA	GTC	frameshift	NA	NA	NA	-1
SSC	chr5	151561858	12A2p6	cell line	sgMsh2	151561858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	326	0	0	NA	exonic	Vmn2r18	nonsynonymous SNV	"Vmn2r18:NM_001102582:exon5:c.A2170G:p.S724G,Vmn2r18:NM_001385214:exon6:c.A2395G:p.S799G"	5qG3	chr5-110099887-151647482	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9999979	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	112	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
SSC	chr6	4537429	12A2p6	cell line	sgMsh2	4537429	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	183	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon48:c.G3257A:p.R1086H	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	0.9967871	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	210	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.522521609	2	2.19E-08	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	7685200	12A2p6	cell line	sgMsh2	7685200	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	127	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T456A:p.D152E	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.916554298	1	0.9987755	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	8013007	12A2p6	cell line	sgMsh2	8013007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	141	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon33:c.C3044A:p.P1015H	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9754232	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	8176324	12A2p6	cell line	sgMsh2	8176324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	174	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon2:c.T32C:p.L11P	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.629595709	2	0.9997084	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1803	183	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.772218411	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
SSC	chr6	14755004	12A2p6	cell line	sgMsh2	14755004	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	261	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon1:c.A243C:p.E81D	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.878007622	1	0.9998584	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	15379796	12A2p6	cell line	sgMsh2	15379796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	71	0	0	NA	exonic	Foxp2	synonymous SNV	"Foxp2:NM_001286607:exon6:c.A678G:p.Q226Q,Foxp2:NM_212435:exon6:c.A741G:p.Q247Q,Foxp2:NM_053242:exon8:c.A741G:p.Q247Q"	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9983086	AAG	synonymous	NA	NA	NA	NA
SSC	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	227	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.638161637	2	0.9999698	GTT	synonymous	NA	NA	NA	NA
SSC	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	220	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.646727566	2	0.999918	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	236	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.586766069	2	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	169	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.702406098	2	0.9765042	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.666	184	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	4	1	1	0.9999993	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
SSC	chr6	21969962	12A2p6	cell line	sgMsh2	21969962	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	235	0	0	NA	exonic	Ing3	frameshift deletion	"Ing3:NM_001311061:exon9:c.730delT:p.F244Lfs*27,Ing3:NM_023626:exon9:c.763delT:p.F255Lfs*27"	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.668142386	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC	chr6	24570648	12A2p6	cell line	sgMsh2	24570648	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	179	0	0	NA	exonic	Asb15	stopgain	Asb15:NM_080847:exon10:c.C1624T:p.R542X	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.882290586	1	0.9988786	CCG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	24955468	12A2p6	cell line	sgMsh2	24955468	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	21	0	0	NA	exonic	Tmem229a	synonymous SNV	Tmem229a:NM_177013:exon1:c.C286T:p.L96L	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9483557	AGG	synonymous	NA	NA	NA	NA
SSC	chr6	25669857	12A2p6	cell line	sgMsh2	25669857	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	178	0	0	NA	exonic	Gpr37	synonymous SNV	Gpr37:NM_010338:exon2:c.G987T:p.V329V	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	2	0.9999998	CCA	synonymous	NA	NA	NA	NA
SSC	chr6	27363364	12A2p6	cell line	sgMsh2	27363364	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	214	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2151C:p.D717D,Grm8:NM_001361125:exon9:c.T2151C:p.D717D,Grm8:NM_008174:exon9:c.T2151C:p.D717D"	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.561068285	2	0.9999998	GAT	synonymous	G	7	GGGGGGG	NA
SSC	chr6	28668629	12A2p6	cell line	sgMsh2	28668629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	164	0	0	NA	exonic	Snd1	synonymous SNV	Snd1:NM_019776:exon12:c.T1314C:p.R438R	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.65101053	2	0.998354	GTA	synonymous	NA	NA	NA	NA
SSC	chr6	29433497	12A2p6	cell line	sgMsh2	29433497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon1:c.C39T:p.L13L,Flnc:NM_001311074:exon1:c.C39T:p.L13L"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.882290586	1	0.9872096	TCG	synonymous	CGGCCT	12	CGGCCTCGGCCT	NA
SSC	chr6	29443464	12A2p6	cell line	sgMsh2	29443464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	115	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001081185:exon10:c.T1643C:p.V548A,Flnc:NM_001311074:exon10:c.T1643C:p.V548A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.706689062	2	0.8706132	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	33	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.753801666	1	8.23E-06	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	30119035	12A2p6	cell line	sgMsh2	30119035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	84	0	0	NA	exonic	Nrf1	synonymous SNV	"Nrf1:NM_001164226:exon10:c.A1152G:p.S384S,Nrf1:NM_001164227:exon10:c.A1152G:p.S384S,Nrf1:NM_001164228:exon10:c.A1152G:p.S384S,Nrf1:NM_001164230:exon10:c.A1152G:p.S384S,Nrf1:NM_001361692:exon10:c.A1152G:p.S384S,Nrf1:NM_001361694:exon10:c.A1152G:p.S384S,Nrf1:NM_001361695:exon10:c.A1152G:p.S384S,Nrf1:NM_010938:exon10:c.A1152G:p.S384S,Nrf1:NM_001164229:exon11:c.A1188G:p.S396S,Nrf1:NM_001361693:exon11:c.A1188G:p.S396S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.462560113	2	0.9978014	CAC	synonymous	NA	NA	NA	NA
SSC	chr6	30129339	12A2p6	cell line	sgMsh2	30129339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	128	0	0	NA	exonic	Nrf1	nonsynonymous SNV	"Nrf1:NM_001164230:exon12:c.T1507C:p.C503R,Nrf1:NM_001164229:exon13:c.T1543C:p.C515R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.458277149	2	0.9997932	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	30370390	12A2p6	cell line	sgMsh2	30370390	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	140	0	0	NA	exonic	Zc3hc1	stopgain	"Zc3hc1:NM_001311086:exon9:c.G1312T:p.E438X,Zc3hc1:NM_172735:exon9:c.G1312T:p.E438X"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.80091427	1	0.8579597	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	30370456	12A2p6	cell line	sgMsh2	30370456	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	103	0	0	NA	exonic	Zc3hc1	nonsynonymous SNV	"Zc3hc1:NM_001311086:exon9:c.A1246C:p.S416R,Zc3hc1:NM_172735:exon9:c.A1246C:p.S416R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.586766069	2	0.9966941	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	30519689	12A2p6	cell line	sgMsh2	30519689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	149	0	0	NA	exonic	Ssmem1	synonymous SNV	"Ssmem1:NM_027073:exon3:c.A372G:p.S124S,Ssmem1:NM_029373:exon3:c.A516G:p.S172S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.625312745	2	0.999067	CAC	synonymous	NA	NA	NA	NA
SSC	chr6	30581677	12A2p6	cell line	sgMsh2	30581677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	186	0	0	NA	exonic	Cpa4	nonsynonymous SNV	Cpa4:NM_027926:exon7:c.A622G:p.T208A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.509672717	2	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	154	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	2	0.9999386	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	32223949	12A2p6	cell line	sgMsh2	32223949	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	103	0	0	NA	exonic	Plxna4	synonymous SNV	Plxna4:NM_175750:exon10:c.C2289T:p.N763N	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.638161637	2	0.9807146	TGT	synonymous	NA	NA	NA	NA
SSC	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	137	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.608180889	2	0.9991643	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	37927588	12A2p6	cell line	sgMsh2	37927588	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	152	0	0	NA	exonic	Trim24	nonsynonymous SNV	"Trim24:NM_001272064:exon6:c.C944T:p.T315I,Trim24:NM_001272076:exon6:c.C734T:p.T245I,Trim24:NM_145076:exon6:c.C944T:p.T315I"	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.830895018	1	0.9664371	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	441	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.522521609	2	1	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	42	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.69384017	1	8.22E-06	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	40465892	12A2p6	cell line	sgMsh2	40465892	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	253	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon12:c.T1597G:p.S533A	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9995734	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	40895680	12A2p6	cell line	sgMsh2	40895680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	175	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon5:c.A491G:p.E164G	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8365575	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	199	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9969602	ACG	synonymous	NA	NA	NA	NA
SSC	chr6	42406480	12A2p6	cell line	sgMsh2	42406480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	exonic	Tas2r135	nonsynonymous SNV	Tas2r135:NM_199159:exon1:c.A952G:p.R318G	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.719537954	2	0.7703819	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	42593742	12A2p6	cell line	sgMsh2	42593742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	267	0	0	NA	exonic	Tcaf3	nonsynonymous SNV	Tcaf3:NM_203396:exon2:c.A1075C:p.I359L	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.659576458	2	0.9999745	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	42744168	12A2p6	cell line	sgMsh2	42744168	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	383	0	0	NA	exonic	Olfr453	nonsynonymous SNV	Olfr453:NM_001011799:exon1:c.C130A:p.L44I	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.749518702	2	0.9855132	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	42912284	12A2p6	cell line	sgMsh2	42912284	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	206	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.G760T:p.A254S	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.67242535	2	0.9990304	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	275	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.513955681	2	1.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	43523898	12A2p6	cell line	sgMsh2	43523898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	134	0	0	NA	exonic	Tpk1	nonsynonymous SNV	"Tpk1:NM_001311111:exon5:c.T244C:p.Y82H,Tpk1:NM_013861:exon5:c.T244C:p.Y82H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.7522616	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	48450153	12A2p6	cell line	sgMsh2	48450153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	135	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon6:c.A824G:p.E275G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9976776	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	138	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.539653465	2	0.9999673	GTC	synonymous	NA	NA	NA	NA
SSC	chr6	48465764	12A2p6	cell line	sgMsh2	48465764	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	238	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon38:c.A6069G:p.S2023S	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.235563021	3	1.02E-09	CAT	synonymous	NA	NA	NA	NA
SSC	chr6	48472446	12A2p6	cell line	sgMsh2	48472446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	205	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon48:c.C7320T:p.A2440A	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.788065378	1	0.7452218	CCT	synonymous	NA	NA	NA	NA
SSC	chr6	48498688	12A2p6	cell line	sgMsh2	48498688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	142	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon101:c.C15175T:p.L5059F	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.852309838	1	0.9860345	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	187	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9953023	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	48619665	12A2p6	cell line	sgMsh2	48619665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	72	0	0	NA	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A472G:p.R158G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.783782414	1	0.7713417	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	48723979	12A2p6	cell line	sgMsh2	48723979	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	193	0	0	NA	exonic	Gimap7	synonymous SNV	Gimap7:NM_146167:exon2:c.C498A:p.A166A	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.766650558	2	0.5729909	CCA	synonymous	NA	NA	NA	NA
SSC	chr6	48988514	12A2p6	cell line	sgMsh2	48988514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	240	0	0	NA	exonic	Svs1	synonymous SNV	Svs1:NM_172888:exon1:c.C1455T:p.G485G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9999973	GCC	synonymous	NA	NA	NA	NA
SSC	chr6	49417382	12A2p6	cell line	sgMsh2	49417382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	246	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon7:c.C608T:p.P203L,Stk31:NM_029916:exon7:c.C677T:p.P226L"	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.642444602	2	0.9999841	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	54218559	12A2p6	cell line	sgMsh2	54218559	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	87	0	0	NA	exonic	Chn2	nonsynonymous SNV	Chn2:NM_001163640:exon5:c.A212C:p.E71A	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.522521609	2	0.998429	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	54622225	12A2p6	cell line	sgMsh2	54622225	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	202	0	0	NA	exonic	Plekha8	nonsynonymous SNV	"Plekha8:NM_001001335:exon7:c.C608T:p.T203I,Plekha8:NM_001164361:exon7:c.C743T:p.T248I"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.612463853	2	0.9999805	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	55260598	12A2p6	cell line	sgMsh2	55260598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	160	0	0	NA	exonic	Mindy4	nonsynonymous SNV	"Mindy4:NM_001142781:exon7:c.A1157C:p.K386T,Mindy4:NM_177883:exon7:c.A1157C:p.K386T"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9990097	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	55479287	12A2p6	cell line	sgMsh2	55479287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	98	0	0	NA	exonic	Adcyap1r1	nonsynonymous SNV	"Adcyap1r1:NM_001025372:exon9:c.T659C:p.F220S,Adcyap1r1:NM_007407:exon9:c.T659C:p.F220S"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	0.955100974	1	0.9988593	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	56137366	12A2p6	cell line	sgMsh2	56137366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	163	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon13:c.T1534C:p.W512R,Pde1c:NM_001159956:exon13:c.T1450C:p.W484R,Pde1c:NM_001025568:exon14:c.T1561C:p.W521R,Pde1c:NM_001159953:exon14:c.T1561C:p.W521R,Pde1c:NM_001159957:exon14:c.T1477C:p.W493R,Pde1c:NM_001355475:exon14:c.T1561C:p.W521R,Pde1c:NM_001159955:exon15:c.T1561C:p.W521R,Pde1c:NM_001159960:exon15:c.T1561C:p.W521R,Pde1c:NM_011054:exon15:c.T1561C:p.W521R"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.792348342	1	0.7999178	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	56730679	12A2p6	cell line	sgMsh2	56730679	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	132	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon8:c.A608C:p.K203T	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.710972026	2	0.0985974	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	56878066	12A2p6	cell line	sgMsh2	56878066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	178	0	0	NA	exonic	Fkbp9	synonymous SNV	Fkbp9:NM_012056:exon10:c.A1569G:p.T523T	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.591049033	2	0.9999767	CAG	synonymous	NA	NA	NA	NA
SSC	chr6	56956940	12A2p6	cell line	sgMsh2	56956940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	564	0	0	NA	exonic	Vmn1r4	nonsynonymous SNV	Vmn1r4:NM_134176:exon1:c.T428G:p.F143C	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.728103882	2	0.9999826	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	57036601	12A2p6	cell line	sgMsh2	57036601	T	C	SNV	Mutect2;Vardict	2	0.025	1034	0	0	NA	exonic	Vmn1r8	synonymous SNV	Vmn1r8:NM_134187:exon1:c.T636C:p.L212L	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.1070741	3	1	TTC	synonymous	NA	NA	NA	NA
SSC	chr6	57210453	12A2p6	cell line	sgMsh2	57210453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	909	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.T596C:p.M199T	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.646727566	2	1	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	57432499	12A2p6	cell line	sgMsh2	57432499	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	504	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.A809T:p.Y270F	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.67242535	2	6.19E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	207	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.77949945	1	0.6161966	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	57604075	12A2p6	cell line	sgMsh2	57604075	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	93	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon6:c.G759T:p.E253D	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.569634213	2	0.9961235	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	240	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.805197234	1	0.9161269	CCT	synonymous	NA	NA	NA	NA
SSC	chr6	65120012	12A2p6	cell line	sgMsh2	65120012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	150	0	0	NA	exonic	Hpgds	nonsynonymous SNV	Hpgds:NM_019455:exon6:c.A512G:p.Y171C	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	0.9883503	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.084	418	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.359768977	3	0.9966515	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	67535275	12A2p6	cell line	sgMsh2	67535275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	108	0	0	NA	exonic	Tacstd2	synonymous SNV	Tacstd2:NM_020047:exon1:c.A432C:p.R144R	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.582483105	2	0.9979986	TTC	synonymous	NA	NA	NA	NA
SSC	chr6	71134110	12A2p6	cell line	sgMsh2	71134110	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	87	0	0	NA	exonic	Thnsl2	nonsynonymous SNV	"Thnsl2:NM_001033929:exon5:c.T773G:p.V258G,Thnsl2:NM_178413:exon6:c.T773G:p.V258G"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.548219393	2	0.996737	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	238	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	0.946535046	1	0.9999989	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	221	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9999916	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	77	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.71525499	2	0.639825	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	72555640	12A2p6	cell line	sgMsh2	72555640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	162	0	0	NA	exonic	Capg	nonsynonymous SNV	"Capg:NM_001042534:exon3:c.C187A:p.L63M,Capg:NM_001271395:exon3:c.C187A:p.L63M,Capg:NM_007599:exon3:c.C187A:p.L63M,Capg:NM_001271415:exon4:c.C187A:p.L63M"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.710972026	2	0.9546116	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	72788310	12A2p6	cell line	sgMsh2	72788310	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	87	0	0	NA	exonic	Tcf7l1	frameshift deletion	"Tcf7l1:NM_001079822:exon3:c.336delT:p.F112Lfs*11,Tcf7l1:NM_009332:exon3:c.336delT:p.F112Lfs*11"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	0.989364686	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	199	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	73044721	12A2p6	cell line	sgMsh2	73044721	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	115	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon64:c.G10617T:p.M3539I	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.75808463	1	0.5201823	CCA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	73083103	12A2p6	cell line	sgMsh2	73083103	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	177	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon52:c.C8497A:p.L2833I	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.599614961	2	0.9999585	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	73138717	12A2p6	cell line	sgMsh2	73138717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	141	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon31:c.T4697C:p.F1566S	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.998107	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	73469521	12A2p6	cell line	sgMsh2	73469521	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	272	0	0	NA	exonic	4931417E11Rik	nonsynonymous SNV	4931417E11Rik:NM_025737:exon1:c.A44T:p.K15I	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.680991278	2	0.9998556	TTT	nonsynonymous	T	5	TTTTT	NA
SSC	chr6	76882721	12A2p6	cell line	sgMsh2	76882721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	228	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon18:c.A2547G:p.A849A,Ctnna2:NM_009819:exon19:c.A2691G:p.A897A,Ctnna2:NM_145732:exon19:c.A2547G:p.A849A,Ctnna2:NM_001109764:exon20:c.A2691G:p.A897A"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9999945	CTG	synonymous	NA	NA	NA	NA
SSC	chr6	77244446	12A2p6	cell line	sgMsh2	77244446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	142	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.T885C:p.I295I,Lrrtm1:NM_028880:exon2:c.T885C:p.I295I"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.436862329	2	0.9991179	TTG	synonymous	NA	NA	NA	NA
SSC	chr6	77244454	12A2p6	cell line	sgMsh2	77244454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	136	0	0	NA	exonic	Lrrtm1	nonsynonymous SNV	"Lrrtm1:NM_001362109:exon2:c.G893A:p.R298H,Lrrtm1:NM_028880:exon2:c.G893A:p.R298H"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.475409005	2	0.9999745	CGT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	78382333	12A2p6	cell line	sgMsh2	78382333	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	149	0	0	NA	exonic	Reg3a	synonymous SNV	Reg3a:NM_011259:exon4:c.G315A:p.G105G	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.92940319	1	0.9997407	GGC	synonymous	NA	NA	NA	NA
SSC	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	278	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.710972026	2	0.9981067	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	83079167	12A2p6	cell line	sgMsh2	83079167	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	182	0	0	NA	exonic	Pcgf1	nonsynonymous SNV	Pcgf1:NM_197992:exon3:c.T215C:p.M72T	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.509672717	2	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	83675691	12A2p6	cell line	sgMsh2	83675691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	146	0	0	NA	exonic	Cd207	synonymous SNV	Cd207:NM_144943:exon3:c.T456C:p.S152S	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.535370501	2	0.9999866	GAC	synonymous	NA	NA	NA	NA
SSC	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	90	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.839460946	1	0.9448735	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	84101948	12A2p6	cell line	sgMsh2	84101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	139	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon21:c.A2108G:p.D703G,Dysf:NM_001077694:exon22:c.A2198G:p.D733G,Dysf:NM_021469:exon22:c.A2201G:p.D734G"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.77949945	1	0.6889459	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	85830850	12A2p6	cell line	sgMsh2	85830850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	275	0	0	NA	exonic	Nat8	synonymous SNV	"Nat8:NM_001362060:exon2:c.C300A:p.S100S,Nat8:NM_023455:exon3:c.C300A:p.S100S"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.518238645	2	1.04E-09	AGG	synonymous	NA	NA	NA	NA
SSC	chr6	86449857	12A2p6	cell line	sgMsh2	86449857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	150	0	0	NA	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon5:c.A1001G:p.K334R,C87436:NM_001243742:exon5:c.A1031G:p.K344R,C87436:NM_001364555:exon5:c.A1031G:p.K344R,C87436:NM_001364556:exon5:c.A1031G:p.K344R,C87436:NM_001364557:exon5:c.A1031G:p.K344R,C87436:NM_001364558:exon5:c.A1001G:p.K334R,C87436:NM_146170:exon5:c.A1031G:p.K344R"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.84374391	1	0.9817126	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	87465634	12A2p6	cell line	sgMsh2	87465634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	80	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon8:c.A800C:p.K267T,Arhgap25:NM_001037727:exon9:c.A1067C:p.K356T,Arhgap25:NM_175476:exon9:c.A989C:p.K330T"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.595331997	2	0.9797491	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	87845519	12A2p6	cell line	sgMsh2	87845519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	300	0	0	NA	exonic	Cnbp	nonsynonymous SNV	"Cnbp:NM_001109745:exon3:c.T142C:p.Y48H,Cnbp:NM_001109746:exon3:c.T142C:p.Y48H,Cnbp:NM_001347325:exon3:c.T163C:p.Y55H,Cnbp:NM_001355195:exon3:c.T145C:p.Y49H,Cnbp:NM_013493:exon3:c.T163C:p.Y55H"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.526804573	2	1.01E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	151	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.766650558	1	0.5215133	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	40	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9856425	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	57	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.586766069	2	0.9248215	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	89332172	12A2p6	cell line	sgMsh2	89332172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	126	0	0	NA	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon18:c.T3424C:p.F1142L	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9999627	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
SSC	chr6	89845352	12A2p6	cell line	sgMsh2	89845352	C	A	SNV	Mutect2;Vardict	2	0.031	938	0	0	NA	exonic	Vmn1r42	nonsynonymous SNV	Vmn1r42:NM_053221:exon1:c.G234T:p.M78I	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.132771884	3	1	GCA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	89977074	12A2p6	cell line	sgMsh2	89977074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	475	0	0	NA	exonic	Vmn1r46	synonymous SNV	Vmn1r46:NM_053229:exon1:c.T904C:p.L302L	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.732386846	2	0.9997561	ATT	synonymous	NA	NA	NA	NA
SSC	chr6	90370356	12A2p6	cell line	sgMsh2	90370356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	133	0	0	NA	exonic	Zxdc	nonsynonymous SNV	"Zxdc:NM_030260:exon1:c.A698G:p.H233R,Zxdc:NM_173002:exon1:c.A698G:p.H233R"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.835177982	1	0.9648823	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	249	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.788065378	1	0.729445	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	92796047	12A2p6	cell line	sgMsh2	92796047	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	198	0	0	NA	exonic	Adamts9	nonsynonymous SNV	Adamts9:NM_175314:exon36:c.C5386A:p.P1796T	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	2	0.9992405	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	93678890	12A2p6	cell line	sgMsh2	93678890	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	140	0	0	NA	exonic	Magi1	synonymous SNV	"Magi1:NM_001083320:exon23:c.C3126T:p.P1042P,Magi1:NM_001286784:exon23:c.C3771T:p.P1257P,Magi1:NM_001029850:exon24:c.C3774T:p.P1258P"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.256977841	3	0.9999911	CGG	synonymous	GGGT	8	GGGTGGGT	NA
SSC	chr6	97288395	12A2p6	cell line	sgMsh2	97288395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	67	0	0	NA	exonic	Frmd4b	frameshift deletion	"Frmd4b:NM_001346637:exon23:c.3073delT:p.W1025Gfs*9,Frmd4b:NM_001346639:exon23:c.2935delT:p.W979Gfs*9,Frmd4b:NM_145148:exon24:c.2911delT:p.W971Gfs*9"	6qD3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.522521609	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr6	97300286	12A2p6	cell line	sgMsh2	97300286	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	238	0	0	NA	exonic	Frmd4b	frameshift deletion	"Frmd4b:NM_001346637:exon19:c.1845delC:p.K616Sfs*54,Frmd4b:NM_001346639:exon19:c.1707delC:p.K570Sfs*54,Frmd4b:NM_145148:exon20:c.1683delC:p.K562Sfs*54"	6qD3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.346920085	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	336	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.706689062	2	0.9997665	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	104774501	12A2p6	cell line	sgMsh2	104774501	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	324	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon10:c.A1117T:p.I373F	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.719537954	2	0.9986575	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	106716710	12A2p6	cell line	sgMsh2	106716710	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	146	0	0	NA	exonic	Il5ra	nonsynonymous SNV	Il5ra:NM_008370:exon11:c.C1066T:p.L356F	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.304090445	3	0.9991857	AGT	nonsynonymous	TGAG	8	TGAGTGAG	NA
SSC	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	199	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.71525499	2	0.9778395	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
SSC	chr6	108417962	12A2p6	cell line	sgMsh2	108417962	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	252	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon39:c.A5035G:p.R1679G	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.205582272	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	108485320	12A2p6	cell line	sgMsh2	108485320	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	223	0	0	NA	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon49:c.C6342T:p.N2114N	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.728103882	2	0.969399	ACA	synonymous	NA	NA	NA	NA
SSC	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	110	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9945633	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	111066834	12A2p6	cell line	sgMsh2	111066834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon3:c.T809C:p.I270T,Grm7:NM_177328:exon3:c.T809C:p.I270T"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8430576	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	112665281	12A2p6	cell line	sgMsh2	112665281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	252	0	0	NA	exonic	Rad18	nonsynonymous SNV	"Rad18:NM_001167730:exon9:c.T1024C:p.Y342H,Rad18:NM_001381931:exon9:c.T1024C:p.Y342H,Rad18:NM_001381932:exon9:c.T1024C:p.Y342H,Rad18:NM_021385:exon9:c.T1024C:p.Y342H,Rad18:NM_001381933:exon10:c.T628C:p.Y210H"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.573917177	2	3.64E-08	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	113137980	12A2p6	cell line	sgMsh2	113137980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	147	0	0	NA	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.A2561C:p.K854T,Setd5:NM_028385:exon17:c.A2504C:p.K835T"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.599614961	2	0.9997064	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	113315417	12A2p6	cell line	sgMsh2	113315417	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	139	0	0	NA	exonic	Brpf1	frameshift deletion	"Brpf1:NM_001282126:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282127:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282128:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_030178:exon3:c.1423delA:p.S476Afs*17"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.608180889	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC	chr6	113372597	12A2p6	cell line	sgMsh2	113372597	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	43	0	0	NA	exonic	Tada3	stopgain	"Tada3:NM_133932:exon5:c.574delC:p.L192fs*0,Tada3:NM_001372392:exon6:c.598delC:p.L200fs*0,Tada3:NM_001372393:exon6:c.598delC:p.L200fs*0"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	NA	NA	AGG	nonsynonymous	G	5	GGGGG	-1
SSC	chr6	113465768	12A2p6	cell line	sgMsh2	113465768	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	211	0	0	NA	exonic	Il17re	stopgain	"Il17re:NM_001034029:exon7:c.C133T:p.Q45X,Il17re:NM_001362204:exon8:c.C736T:p.Q246X,Il17re:NM_001362205:exon8:c.C736T:p.Q246X,Il17re:NM_145826:exon8:c.C736T:p.Q246X,Il17re:NM_001034031:exon9:c.C133T:p.Q45X"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.14990374	3	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	114304017	12A2p6	cell line	sgMsh2	114304017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	130	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon6:c.C531T:p.Y177Y	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.73666981	2	0.7377264	ACA	synonymous	NA	NA	NA	NA
SSC	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	150	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.676708314	2	0.9883503	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	115949743	12A2p6	cell line	sgMsh2	115949743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	240	0	0	NA	exonic;splicing	H1f8;H1f8	nonsynonymous SNV	H1f8:NM_001346702:exon4:c.T728C:p.V243A	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.552502357	2	1.62E-08	GTA	nonsynonymous	AGGT	12	AGGTAGGTAGGT	NA
SSC	chr6	116314375	12A2p6	cell line	sgMsh2	116314375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	232	0	0	NA	exonic	Zfand4	synonymous SNV	"Zfand4:NM_001290339:exon4:c.T588C:p.S196S,Zfand4:NM_001290338:exon6:c.T894C:p.S298S,Zfand4:NM_001309446:exon7:c.T1269C:p.S423S"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.775216486	1	0.5052667	GTG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
SSC	chr6	116454310	12A2p6	cell line	sgMsh2	116454310	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	107	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon2:c.C156T:p.D52D	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.848026874	1	0.9680728	AGT	synonymous	NA	NA	NA	NA
SSC	chr6	116540700	12A2p6	cell line	sgMsh2	116540700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	459	0	0	NA	exonic	Olfr213	synonymous SNV	Olfr213:NM_001011801:exon1:c.A246G:p.T82T	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.689557206	2	0.9999995	CAG	synonymous	NA	NA	NA	NA
SSC	chr6	118088258	12A2p6	cell line	sgMsh2	118088258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	179	0	0	NA	exonic	Rasgef1a	nonsynonymous SNV	"Rasgef1a:NM_001316749:exon10:c.A1182C:p.K394N,Rasgef1a:NM_001362103:exon10:c.A1233C:p.K411N,Rasgef1a:NM_001362104:exon10:c.A1182C:p.K394N,Rasgef1a:NM_027526:exon10:c.A1206C:p.K402N,Rasgef1a:NM_001362105:exon11:c.A1215C:p.K405N"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.740952774	2	0.847338	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	118178506	12A2p6	cell line	sgMsh2	118178506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	89	0	0	NA	exonic	Ret	nonsynonymous SNV	"Ret:NM_001080780:exon6:c.T1228C:p.Y410H,Ret:NM_009050:exon6:c.T1228C:p.Y410H"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.728103882	2	0.6238937	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	118180219	12A2p6	cell line	sgMsh2	118180219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	294	0	0	NA	exonic	Ret	nonsynonymous SNV	"Ret:NM_001080780:exon4:c.A869G:p.E290G,Ret:NM_009050:exon4:c.A869G:p.E290G"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.9999041	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	70	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
SSC	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	180	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.483974933	2	0.9999996	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
SSC	chr6	119196172	12A2p6	cell line	sgMsh2	119196172	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	125	0	0	NA	exonic	Cacna1c	synonymous SNV	"Cacna1c:NM_001255997:exon1:c.G60A:p.S20S,Cacna1c:NM_001255998:exon1:c.G60A:p.S20S,Cacna1c:NM_001255999:exon1:c.G60A:p.S20S,Cacna1c:NM_009781:exon1:c.G60A:p.S20S"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.895139478	1	0.9967354	ACG	synonymous	NA	NA	NA	NA
SSC	chr6	119749857	12A2p6	cell line	sgMsh2	119749857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	262	0	0	NA	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon12:c.T2138C:p.M713T	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	2	0.9999534	CAT	nonsynonymous	T	5	TTTTT	NA
SSC	chr6	121387793	12A2p6	cell line	sgMsh2	121387793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	128	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon7:c.A1636G:p.N546D,Iqsec3:NM_001033354:exon8:c.A2536G:p.N846D"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.698123134	2	0.9343045	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	121644968	12A2p6	cell line	sgMsh2	121644968	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	226	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon9:c.G972A:p.M324I	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.659576458	2	0.9998381	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	121870583	12A2p6	cell line	sgMsh2	121870583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	283	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon16:c.G1919T:p.W640L	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.826612054	1	0.009986735	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	122063608	12A2p6	cell line	sgMsh2	122063608	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.159	318	0	0	NA	exonic	Mug2	frameshift insertion	Mug2:NM_008646:exon18:c.2117dupA:p.S709Ifs*2	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.680991278	NA	NA	GCA	frameshift	NA	NA	NA	1
SSC	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	179	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.753801666	2	0.7192223	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	123393926	12A2p6	cell line	sgMsh2	123393926	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	350	0	0	NA	exonic	Vmn2r20	frameshift deletion	Vmn2r20:NM_001104634:exon5:c.1594delA:p.T532Hfs*76	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.578200141	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chr6	123704621	12A2p6	cell line	sgMsh2	123704621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	518	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon2:c.A487T:p.I163F	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.642444602	2	1.02E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	123741853	12A2p6	cell line	sgMsh2	123741853	C	-	Deletion	Mutect2;Vardict	2	0.032	862	0	0	NA	exonic	Vmn2r23	frameshift deletion	Vmn2r23:NM_001104638:exon6:c.2164delC:p.P723Lfs*46	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.137054848	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr6	123741860	12A2p6	cell line	sgMsh2	123741860	T	A	SNV	Mutect2;Vardict	2	0.009132	897	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon6:c.T2171A:p.F724Y	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.039112027	3	1	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	123825293	12A2p6	cell line	sgMsh2	123825293	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	343	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon5:c.A1650C:p.P550P	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.710972026	2	0.9996881	CTG	synonymous	NA	NA	NA	NA
SSC	chr6	124061284	12A2p6	cell line	sgMsh2	124061284	C	T	SNV	Mutect2;MuSe;Vardict	3	0.128	526	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon6:c.C1817T:p.A606V	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.548219393	2	1	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.183	81	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.783782414	1	0.7660744	GAT	synonymous	NA	NA	NA	NA
SSC	chr6	124456924	12A2p6	cell line	sgMsh2	124456924	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	103	0	0	NA	exonic	Clstn3	synonymous SNV	"Clstn3:NM_001346656:exon8:c.T1165C:p.L389L,Clstn3:NM_153508:exon8:c.T1276C:p.L426L"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.359768977	3	0.5960603	AAC	synonymous	NA	NA	NA	NA
SSC	chr6	124934306	12A2p6	cell line	sgMsh2	124934306	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	108	0	0	NA	exonic	Mlf2	frameshift deletion	"Mlf2:NM_001170341:exon6:c.283delG:p.G96Afs*51,Mlf2:NM_145385:exon6:c.283delG:p.G96Afs*51"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr6	125101957	12A2p6	cell line	sgMsh2	125101957	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	119	0	0	NA	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon7:c.C854A:p.A285D,Chd4:NM_145979:exon7:c.C854A:p.A285D"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.732386846	2	0.7300931	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	125604260	12A2p6	cell line	sgMsh2	125604260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon15:c.T1860C:p.D620D	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.856592802	1	0.9544356	ATT	synonymous	NA	NA	NA	NA
SSC	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	273	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.655293494	2	0.9999869	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	181	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.783782414	1	0.7020538	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	118	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.406881581	2	0.9695489	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	127768716	12A2p6	cell line	sgMsh2	127768716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	87	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon1:c.T32C:p.L11P	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.668142386	2	0.09832519	GAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
SSC	chr6	128489128	12A2p6	cell line	sgMsh2	128489128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	129	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon29:c.A3588G:p.Q1196Q	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.839460946	1	0.9690249	GTT	synonymous	NA	NA	NA	NA
SSC	chr6	131678742	12A2p6	cell line	sgMsh2	131678742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	247	0	0	NA	exonic	Tas2r106	nonsynonymous SNV	Tas2r106:NM_207016:exon1:c.G145A:p.G49S	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.616746817	2	0.9999982	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	132737578	12A2p6	cell line	sgMsh2	132737578	T	C	SNV	Mutect2;Vardict	2	0.036	195	0	0	NA	exonic	Tas2r115	nonsynonymous SNV	Tas2r115:NM_207020:exon1:c.A409G:p.M137V	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.154186704	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	132763029	12A2p6	cell line	sgMsh2	132763029	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	362	0	0	NA	exonic	Tas2r102	nonsynonymous SNV	Tas2r102:NM_199153:exon1:c.T899C:p.L300P	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.796631306	1	0.8611763	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	132803881	12A2p6	cell line	sgMsh2	132803881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	0	0	NA	exonic	Tas2r117	synonymous SNV	Tas2r117:NM_207021:exon1:c.T981C:p.C327C	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	0.9716671	GTT	synonymous	NA	NA	NA	NA
SSC	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	242	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	1	1	1.29E-08	GTG	synonymous	NA	NA	NA	NA
SSC	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	116	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.80091427	1	0.8505869	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	197	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.608180889	2	0.9999801	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	135241314	12A2p6	cell line	sgMsh2	135241314	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	105	0	0	NA	exonic	Gsg1	synonymous SNV	"Gsg1:NM_001080552:exon4:c.T583C:p.L195L,Gsg1:NM_001080553:exon4:c.T574C:p.L192L,Gsg1:NM_010352:exon5:c.T574C:p.L192L"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.518238645	2	0.9997361	AAC	synonymous	NA	NA	NA	NA
SSC	chr6	135733866	12A2p6	cell line	sgMsh2	135733866	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	176	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon15:c.C2681T:p.T894I,Grin2b:NM_008171:exon15:c.C2681T:p.T894I"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.728103882	2	0.9184226	TGT	nonsynonymous	GT	8	GTGTGTGT	NA
SSC	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	167	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.766650558	2	0.514676	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	136587336	12A2p6	cell line	sgMsh2	136587336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	189	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon9:c.T2552C:p.I851T	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.561068285	2	0.9999984	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	129	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	0.99364765	1	0.9999602	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	136765722	12A2p6	cell line	sgMsh2	136765722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	132	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon5:c.T617C:p.L206P,Gucy2c:NM_145067:exon5:c.T617C:p.L206P"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.595331997	2	0.9993546	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.128	183	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.548219393	2	0.9999988	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
SSC	chr6	139843996	12A2p6	cell line	sgMsh2	139843996	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.145	127	0	0	NA	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon2:c.G114T:p.K38N	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.621029781	2	0.9973072	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	140003978	12A2p6	cell line	sgMsh2	140003978	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	143	0	0	NA	exonic	Plcz1	synonymous SNV	Plcz1:NM_054066:exon10:c.T1290C:p.H430H	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.179884488	3	2.97E-09	CAT	synonymous	NA	NA	NA	NA
SSC	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	149	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.685274242	2	0.981519	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	141812722	12A2p6	cell line	sgMsh2	141812722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	268	0	0	NA	exonic	Slco1a4	nonsynonymous SNV	"Slco1a4:NM_001355577:exon13:c.G1562A:p.C521Y,Slco1a4:NM_030687:exon14:c.G1562A:p.C521Y"	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.663859422	2	0.9999641	ACA	nonsynonymous	NA	NA	NA	NA
SSC	chr6	142003391	12A2p6	cell line	sgMsh2	142003391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	286	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon2:c.T258C:p.P86P	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.479691969	2	1.33E-09	GAG	synonymous	NA	NA	NA	NA
SSC	chr6	142364616	12A2p6	cell line	sgMsh2	142364616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	81	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon13:c.T1487C:p.L496P,Recql:NM_001204907:exon13:c.T1487C:p.L496P,Recql:NM_001355511:exon13:c.T1487C:p.L496P,Recql:NM_023042:exon13:c.T1487C:p.L496P"	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.659576458	2	0.8999098	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.415	223	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	3	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
SSC	chr6	145160935	12A2p6	cell line	sgMsh2	145160935	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	111	0	0	NA	exonic	Lrmp	nonsynonymous SNV	"Lrmp:NM_001361633:exon9:c.G356T:p.R119M,Lrmp:NM_001281980:exon11:c.G644T:p.R215M,Lrmp:NM_001368864:exon11:c.G515T:p.R172M,Lrmp:NM_008511:exon11:c.G644T:p.R215M,Lrmp:NM_001281981:exon12:c.G515T:p.R172M"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.856592802	1	0.9782202	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	145816591	12A2p6	cell line	sgMsh2	145816591	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	141	0	0	NA	exonic	Rassf8	nonsynonymous SNV	Rassf8:NM_027760:exon4:c.C1087A:p.L363M	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	1	0.766650558	1	0.5440414	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	147027492	12A2p6	cell line	sgMsh2	147027492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	188	0	0	NA	exonic	Ppfibp1	nonsynonymous SNV	"Ppfibp1:NM_026221:exon24:c.T2576C:p.V859A,Ppfibp1:NM_001170433:exon25:c.T2609C:p.V870A,Ppfibp1:NM_001355729:exon25:c.T2576C:p.V859A,Ppfibp1:NM_001355728:exon28:c.T2765C:p.V922A"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.11164545	NA	2	0.959383938	1	0.9999934	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr6	148846225	12A2p6	cell line	sgMsh2	148846225	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	153	0	0	NA	exonic	Caprin2	synonymous SNV	"Caprin2:NM_001301351:exon16:c.A1734G:p.S578S,Caprin2:NM_181541:exon17:c.A2391G:p.S797S"	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTG	synonymous	GAAG	8	GAAGGAAG	NA
SSC	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1213	305	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
SSC	chr6	149166910	12A2p6	cell line	sgMsh2	149166910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	134	0	0	NA	exonic	Amn1	nonsynonymous SNV	"Amn1:NM_001113424:exon6:c.A599G:p.N200S,Amn1:NM_001356344:exon6:c.A470G:p.N157S,Amn1:NM_001381983:exon6:c.A575G:p.N192S"	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	292	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr6	149328706	12A2p6	cell line	sgMsh2	149328706	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	336	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A3249G:p.I1083M,Resf1:NM_026054:exon3:c.A3249G:p.I1083M,Resf1:NM_001289661:exon4:c.A3249G:p.I1083M"	6qG3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	4028768	12A2p6	cell line	sgMsh2	4028768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	99	0	0	NA	exonic	Lair1	synonymous SNV	"Lair1:NM_001113474:exon3:c.G339A:p.T113T,Lair1:NM_001302675:exon3:c.G339A:p.T113T,Lair1:NM_001302681:exon3:c.G324A:p.T108T,Lair1:NM_001302682:exon3:c.G324A:p.T108T"	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997574	GCG	synonymous	NA	NA	NA	NA
SSC	chr7	4486401	12A2p6	cell line	sgMsh2	4486401	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	121	0	0	NA	exonic	Ppp1r12c	nonsynonymous SNV	Ppp1r12c:NM_029834:exon6:c.A920G:p.D307G	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	4628730	12A2p6	cell line	sgMsh2	4628730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	48	0	0	NA	exonic	Tmem86b	nonsynonymous SNV	Tmem86b:NM_023440:exon3:c.C322T:p.H108Y	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	2	1	1	0.9917088	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	5029759	12A2p6	cell line	sgMsh2	5029759	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	167	0	0	NA	exonic	Zfp865	nonsynonymous SNV	"Zfp865:NM_001033383:exon2:c.T742C:p.Y248H,Zfp865:NM_001290426:exon2:c.T742C:p.Y248H"	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999978	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	5410859	12A2p6	cell line	sgMsh2	5410859	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	661	0	0	NA	exonic	Vmn1r58	frameshift deletion	Vmn1r58:NM_030739:exon2:c.371delA:p.K124Rfs*2	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	G	5	GGGGG	-1
SSC	chr7	6060633	12A2p6	cell line	sgMsh2	6060633	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.265	244	0	0	NA	exonic	Nlrp4c	synonymous SNV	Nlrp4c:NM_031389:exon2:c.C39T:p.Y13Y	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	1	1	1.13E-08	ACT	synonymous	NA	NA	NA	NA
SSC	chr7	6460719	12A2p6	cell line	sgMsh2	6460719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	279	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T209G:p.L70R	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.999962	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	196	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9999902	CCC	synonymous	NA	NA	NA	NA
SSC	chr7	6962695	12A2p6	cell line	sgMsh2	6962695	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	182	0	0	NA	exonic	Usp29	synonymous SNV	"Usp29:NM_001360501:exon8:c.T1536C:p.V512V,Usp29:NM_001360502:exon8:c.T1536C:p.V512V,Usp29:NM_021323:exon8:c.T1536C:p.V512V,Usp29:NM_001290994:exon9:c.T1536C:p.V512V"	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	0.261260805	3	0.9999997	TTA	synonymous	NA	NA	NA	NA
SSC	chr7	7289108	12A2p6	cell line	sgMsh2	7289108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	106	0	0	NA	exonic	Clcn4	nonsynonymous SNV	"Clcn4:NM_001357104:exon8:c.A1460G:p.Y487C,Clcn4:NM_001302386:exon9:c.A1523G:p.Y508C,Clcn4:NM_001357102:exon10:c.A1703G:p.Y568C,Clcn4:NM_001357103:exon11:c.A1703G:p.Y568C,Clcn4:NM_011334:exon11:c.A1703G:p.Y568C,Clcn4:NM_001302387:exon12:c.A1610G:p.Y537C"	7qA1	chr7-3489139-7297085	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9996554	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	10580275	12A2p6	cell line	sgMsh2	10580275	A	G	SNV	Mutect2;Vardict	2	0.039	143	0	0	NA	exonic	Vmn1r69	synonymous SNV	Vmn1r69:NM_145842:exon1:c.T528C:p.R176R	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.167035596	3	1.51E-09	CAC	synonymous	NA	NA	NA	NA
SSC	chr7	10714428	12A2p6	cell line	sgMsh2	10714428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	242	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A557T:p.D186V,Nlrp4b:NM_172481:exon4:c.A557T:p.D186V"	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.766650558	2	0.6764703	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	11847249	12A2p6	cell line	sgMsh2	11847249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	284	0	0	NA	exonic	Vmn1r74	nonsynonymous SNV	Vmn1r74:NM_134206:exon1:c.A475G:p.T159A	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8960283	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	12991168	12A2p6	cell line	sgMsh2	12991168	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	52	0	0	NA	exonic	Slc27a5	nonsynonymous SNV	Slc27a5:NM_009512:exon5:c.G1351A:p.G451R	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.993706	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	13306267	12A2p6	cell line	sgMsh2	13306267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	95	0	0	NA	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon24:c.T2198C:p.I733T,Lig1:NM_001199310:exon24:c.T2198C:p.I733T,Lig1:NM_010715:exon24:c.T2198C:p.I733T"	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.848026874	1	0.960538	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	13804087	12A2p6	cell line	sgMsh2	13804087	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	479	0	0	NA	exonic	Sult2a1	stopgain	Sult2a1:NM_001111296:exon4:c.G510A:p.W170X	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.73666981	2	0.9995524	GCC	nonsynonymous	CAGC	10	CAGCCAGCCA	NA
SSC	chr7	14425549	12A2p6	cell line	sgMsh2	14425549	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	110	0	0	NA	exonic	Sult2a8	synonymous SNV	"Sult2a8:NM_001199306:exon3:c.C144T:p.H48H,Sult2a8:NM_175250:exon3:c.C144T:p.H48H"	7qA1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.75808463	1	0.5350503	AGT	synonymous	NA	NA	NA	NA
SSC	chr7	15397023	12A2p6	cell line	sgMsh2	15397023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	551	0	0	NA	exonic	Obox2	nonsynonymous SNV	Obox2:NM_145708:exon2:c.T179G:p.L60R	7qA2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	15945980	12A2p6	cell line	sgMsh2	15945980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	26	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T74C:p.L25P	7qA2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.762367594	1	0.7649389	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	16079319	12A2p6	cell line	sgMsh2	16079319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	50	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001099277:exon3:c.T1896C:p.T632T,Zfp541:NM_001347559:exon3:c.T1896C:p.T632T"	7qA2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9669551	CTA	synonymous	NA	NA	NA	NA
SSC	chr7	16083478	12A2p6	cell line	sgMsh2	16083478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001347559:exon6:c.T2847C:p.P949P,Zfp541:NM_001099277:exon8:c.T3030C:p.P1010P"	7qA2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9917088	CTA	synonymous	NA	NA	NA	NA
SSC	chr7	18524738	12A2p6	cell line	sgMsh2	18524738	T	G	SNV	Mutect2;Vardict	2	0.017	550	0	0	NA	exonic	Psg25	synonymous SNV	Psg25:NM_054060:exon4:c.A1012C:p.R338R	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.072810388	3	1	CTT	synonymous	NA	NA	NA	NA
SSC	chr7	18682651	12A2p6	cell line	sgMsh2	18682651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	408	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon3:c.A539G:p.E180G	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	18794266	12A2p6	cell line	sgMsh2	18794266	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	591	0	0	NA	exonic	Psg19	frameshift deletion	Psg19:NM_011964:exon3:c.551delC:p.S184Cfs*7	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CGA	frameshift	NA	NA	NA	-1
SSC	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	85	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.959383938	1	0.9979573	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	19287331	12A2p6	cell line	sgMsh2	19287331	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	109	0	0	NA	exonic	Rtn2	frameshift deletion	Rtn2:NM_013648:exon4:c.635delC:p.Q214Rfs*22	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.903705406	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr7	19414281	12A2p6	cell line	sgMsh2	19414281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	110	0	0	NA	exonic	Ckm	synonymous SNV	Ckm:NM_007710:exon2:c.A144G:p.P48P	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.689557206	2	0.9163627	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9987097	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	19918786	12A2p6	cell line	sgMsh2	19918786	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	84	0	0	NA	exonic	Pvr	nonsynonymous SNV	Pvr:NM_027514:exon2:c.A203C:p.K68T	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9988193	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.169	144	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.723820918	2	0.8725943	CAG	synonymous	NA	NA	NA	NA
SSC	chr7	24566482	12A2p6	cell line	sgMsh2	24566482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	118	0	0	NA	exonic	Xrcc1	nonsynonymous SNV	"Xrcc1:NM_001360169:exon5:c.A304G:p.I102V,Xrcc1:NM_001360168:exon7:c.A586G:p.I196V,Xrcc1:NM_009532:exon7:c.A589G:p.I197V"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999351	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	24758344	12A2p6	cell line	sgMsh2	24758344	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	38	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon4:c.T488G:p.L163R	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.441145293	2	0.9109433	GAG	nonsynonymous	CCTGAG	12	CCTGAGCCTGAG	NA
SSC	chr7	24989803	12A2p6	cell line	sgMsh2	24989803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.A1792C:p.S598R,Atp1a3:NM_001374627:exon13:c.A1831C:p.S611R"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	24989809	12A2p6	cell line	sgMsh2	24989809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.T1786C:p.C596R,Atp1a3:NM_001374627:exon13:c.T1825C:p.C609R"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9977686	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	90	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.7104262	CGC	synonymous	C	5	CCCCC	NA
SSC	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	45	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	1	0.9898092	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	29	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9696926	AGG	synonymous	NA	NA	NA	NA
SSC	chr7	25669416	12A2p6	cell line	sgMsh2	25669416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	107	0	0	NA	exonic	Tmem91	nonsynonymous SNV	Tmem91:NM_177102:exon4:c.T443C:p.V148A	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9976031	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	26199170	12A2p6	cell line	sgMsh2	26199170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	343	0	0	NA	exonic	Cyp2b9	nonsynonymous SNV	Cyp2b9:NM_010000:exon6:c.T949C:p.Y317H	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9999988	GTA	nonsynonymous	C	5	CCCCC	NA
SSC	chr7	26814787	12A2p6	cell line	sgMsh2	26814787	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon5:c.A817C:p.I273L	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	27032542	12A2p6	cell line	sgMsh2	27032542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	191	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.T707C:p.I236T	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	27542090	12A2p6	cell line	sgMsh2	27542090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.18	116	0	0	NA	exonic	Pld3	nonsynonymous SNV	"Pld3:NM_001317355:exon4:c.A26G:p.E9G,Pld3:NM_011116:exon4:c.A26G:p.E9G"	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.770933522	1	0.6387522	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	28049181	12A2p6	cell line	sgMsh2	28049181	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.137	56	0	0	NA	exonic	Psmc4	frameshift deletion	Psmc4:NM_011874:exon2:c.58delG:p.V20Cfs*48	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.586766069	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC	chr7	28178283	12A2p6	cell line	sgMsh2	28178283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	exonic	Fbl	nonsynonymous SNV	Fbl:NM_007991:exon7:c.T779C:p.L260P	7qA3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	29009563	12A2p6	cell line	sgMsh2	29009563	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	164	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon99:c.A14299G:p.M4767V	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.132771884	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	29377591	12A2p6	cell line	sgMsh2	29377591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	107	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon10:c.A2755G:p.T919A	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	29386096	12A2p6	cell line	sgMsh2	29386096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	167	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon8:c.T2075C:p.V692A	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999978	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	29704833	12A2p6	cell line	sgMsh2	29704833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	263	0	0	NA	exonic	Catsperg2	nonsynonymous SNV	Catsperg2:NM_029714:exon21:c.A2516G:p.N839S	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9999979	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	29845231	12A2p6	cell line	sgMsh2	29845231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	249	0	0	NA	exonic	Zfp940	nonsynonymous SNV	Zfp940:NM_173738:exon5:c.T1250C:p.V417A	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.999165	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	30245292	12A2p6	cell line	sgMsh2	30245292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	28	0	0	NA	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon22:c.A2734G:p.S912G	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9675851	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	30922543	12A2p6	cell line	sgMsh2	30922543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	234	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.A217G:p.N73D	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	2.17E-08	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	30958277	12A2p6	cell line	sgMsh2	30958277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	162	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon7:c.A1257G:p.P419P,Lsr:NM_001164184:exon8:c.A1404G:p.P468P,Lsr:NM_017405:exon9:c.A1461G:p.P487P"	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8347218	GTG	synonymous	NA	NA	NA	NA
SSC	chr7	30958754	12A2p6	cell line	sgMsh2	30958754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	139	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon6:c.A909G:p.E303E,Lsr:NM_001164184:exon7:c.A1056G:p.E352E,Lsr:NM_017405:exon8:c.A1113G:p.E371E"	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999849	GTT	synonymous	NA	NA	NA	NA
SSC	chr7	31099035	12A2p6	cell line	sgMsh2	31099035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	75	0	0	NA	exonic	Hpn	stoploss	"Hpn:NM_001276269:exon13:c.A1338C:p.X446C,Hpn:NM_008281:exon13:c.A1251C:p.X417C,Hpn:NM_001110252:exon14:c.A1311C:p.X437C"	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.591049033	2	0.9747606	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	184	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999993	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	185	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.959383938	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC	chr7	35203672	12A2p6	cell line	sgMsh2	35203672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	65	0	0	NA	exonic	Lrp3	synonymous SNV	Lrp3:NM_001024707:exon6:c.A1248G:p.Q416Q	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	GTT	synonymous	NA	NA	NA	NA
SSC	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	38	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.8732197	ATA	synonymous	NA	NA	NA	NA
SSC	chr7	35631282	12A2p6	cell line	sgMsh2	35631282	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	76	0	0	NA	exonic	Ankrd27	frameshift deletion	"Ankrd27:NM_001358876:exon24:c.2585delC:p.T862Rfs*11,Ankrd27:NM_145633:exon25:c.2630delC:p.T877Rfs*11"	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.402598617	NA	NA	ACG	frameshift	CGG	9	CGGCGGCGG	-1
SSC	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	126	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.990686	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	36768908	12A2p6	cell line	sgMsh2	36768908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.G321A:p.E107E	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.920469	AGG	synonymous	NA	NA	NA	NA
SSC	chr7	36769746	12A2p6	cell line	sgMsh2	36769746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	84	0	0	NA	exonic	Tshz3	frameshift deletion	Tshz3:NM_172298:exon2:c.1159delA:p.K387Nfs*18	7qB2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr7	38267472	12A2p6	cell line	sgMsh2	38267472	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	51	0	0	NA	exonic	Pop4	nonsynonymous SNV	Pop4:NM_025390:exon3:c.A184T:p.T62S	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9723914	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	41872661	12A2p6	cell line	sgMsh2	41872661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	212	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon1:c.A10G:p.I4V	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999998	ATC	nonsynonymous	A	5	AAAAA	NA
SSC	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	551	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
SSC	chr7	42789024	12A2p6	cell line	sgMsh2	42789024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	346	0	0	NA	exonic	Vmn2r62	nonsynonymous SNV	Vmn2r62:NM_001105059:exon2:c.A387C:p.Q129H	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	42904017	12A2p6	cell line	sgMsh2	42904017	A	T	SNV	Mutect2;MuSe;Vardict	3	0.074	534	0	0	NA	exonic	Vmn2r63	nonsynonymous SNV	Vmn2r63:NM_001105060:exon6:c.T1814A:p.V605E	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.316939337	3	1.02E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	43586411	12A2p6	cell line	sgMsh2	43586411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	199	0	0	NA	exonic	Zfp719	nonsynonymous SNV	"Zfp719:NM_001357769:exon3:c.C196A:p.L66M,Zfp719:NM_172482:exon3:c.C196A:p.L66M"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.719537954	2	0.9707014	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	44141550	12A2p6	cell line	sgMsh2	44141550	A	-	Deletion	Mutect2;Vardict	2	0.044	279	0	0	NA	exonic	Klk1b16	frameshift deletion	Klk1b16:NM_008454:exon5:c.775delA:p.N260Mfs*11	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.188450416	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	64	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	44582513	12A2p6	cell line	sgMsh2	44582513	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	60	0	0	NA	exonic	Napsa	frameshift deletion	Napsa:NM_008437:exon5:c.625delA:p.K209Nfs*21	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr7	44885820	12A2p6	cell line	sgMsh2	44885820	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	45	0	0	NA	exonic	Med25	synonymous SNV	"Med25:NM_001331208:exon4:c.C180A:p.G60G,Med25:NM_001331206:exon5:c.C489A:p.G163G,Med25:NM_001331207:exon5:c.C489A:p.G163G,Med25:NM_029365:exon5:c.C489A:p.G163G"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.873724658	1	0.9349634	AGC	synonymous	NA	NA	NA	NA
SSC	chr7	44973860	12A2p6	cell line	sgMsh2	44973860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	80	0	0	NA	exonic	Cpt1c	nonsynonymous SNV	"Cpt1c:NM_001252470:exon2:c.A8G:p.E3G,Cpt1c:NM_001357670:exon2:c.A8G:p.E3G,Cpt1c:NM_153679:exon2:c.A8G:p.E3G"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	1	0.9990936	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	45091511	12A2p6	cell line	sgMsh2	45091511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	73	0	0	NA	exonic	Rcn3	nonsynonymous SNV	"Rcn3:NM_001355045:exon2:c.G172T:p.A58S,Rcn3:NM_026555:exon2:c.G172T:p.A58S"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	45147281	12A2p6	cell line	sgMsh2	45147281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	51	0	0	NA	exonic	Aldh16a1	nonsynonymous SNV	Aldh16a1:NM_145954:exon7:c.A793G:p.R265G	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9932568	CTG	nonsynonymous	CCTG	9	CCTGCCTGC	NA
SSC	chr7	45327334	12A2p6	cell line	sgMsh2	45327334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	42	0	0	NA	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon4:c.T389C:p.V130A	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	1	0.9874799	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	45494665	12A2p6	cell line	sgMsh2	45494665	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.128	39	0	0	NA	exonic	Nucb1	nonsynonymous SNV	"Nucb1:NM_001163662:exon11:c.G1123A:p.G375R,Nucb1:NM_008749:exon11:c.G1123A:p.G375R"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.548219393	2	0.8521256	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	61	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.9940418	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	46195657	12A2p6	cell line	sgMsh2	46195657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	98	0	0	NA	exonic	Ush1c	stoploss	Ush1c:NM_153677:exon27:c.A2733C:p.X911C	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997399	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	46310014	12A2p6	cell line	sgMsh2	46310014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	106	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon56:c.T8581C:p.Y2861H	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	46378336	12A2p6	cell line	sgMsh2	46378336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	35	0	0	NA	exonic	Myod1	nonsynonymous SNV	Myod1:NM_010866:exon3:c.A899G:p.D300G	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9526134	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	46662078	12A2p6	cell line	sgMsh2	46662078	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.268	46	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T239C:p.F80S,Tph1:NM_001276372:exon3:c.T239C:p.F80S,Tph1:NM_009414:exon3:c.T239C:p.F80S"	7qB3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.990486	GAA	nonsynonymous	G	5	GGGGG	NA
SSC	chr7	48198866	12A2p6	cell line	sgMsh2	48198866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	exonic	Mrgprb4	nonsynonymous SNV	Mrgprb4:NM_205795:exon1:c.A313G:p.M105V	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.137054848	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	48552267	12A2p6	cell line	sgMsh2	48552267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	165	0	0	NA	exonic	Mrgprb2	synonymous SNV	Mrgprb2:NM_175531:exon2:c.T709C:p.L237L	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.890856514	1	0.9989413	AAG	synonymous	NA	NA	NA	NA
SSC	chr7	48867125	12A2p6	cell line	sgMsh2	48867125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	139	0	0	NA	exonic	E2f8	synonymous SNV	"E2f8:NM_001013368:exon13:c.T2505C:p.D835D,E2f8:NM_001360812:exon13:c.T2505C:p.D835D"	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9998162	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	49556971	12A2p6	cell line	sgMsh2	49556971	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	49	0	0	NA	exonic	Nav2	nonsynonymous SNV	"Nav2:NM_175272:exon18:c.T4543G:p.S1515A,Nav2:NM_001111016:exon19:c.T4360G:p.S1454A"	7qB4	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9922605	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	56135305	12A2p6	cell line	sgMsh2	56135305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	255	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon29:c.C4390T:p.L1464F,Herc2:NM_010418:exon29:c.C4390T:p.L1464F"	7qB5	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	5.82E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	56724665	12A2p6	cell line	sgMsh2	56724665	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	95	0	0	NA	exonic	Gabrg3	synonymous SNV	Gabrg3:NM_008074:exon10:c.A1152T:p.P384P	7qB5	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	GTG	synonymous	GGT	8	GGTGGTGG	NA
SSC	chr7	56734976	12A2p6	cell line	sgMsh2	56734976	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	125	0	0	NA	exonic	Gabrg3	frameshift deletion	Gabrg3:NM_008074:exon7:c.836delA:p.K279Rfs*9	7qB5	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.903705406	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr7	59275864	12A2p6	cell line	sgMsh2	59275864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	110	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.T389C:p.I130T,Ube3a:NM_011668:exon6:c.T452C:p.I151T"	7qB5	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998869	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	62379763	12A2p6	cell line	sgMsh2	62379763	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	172	0	0	NA	exonic	Magel2	frameshift deletion	Magel2:NM_013779:exon1:c.2414delG:p.A807Hfs*66	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.839460946	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr7	63099351	12A2p6	cell line	sgMsh2	63099351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	90	0	0	NA	exonic	Chrna7	nonsynonymous SNV	Chrna7:NM_007390:exon10:c.A1382G:p.K461R	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	64318302	12A2p6	cell line	sgMsh2	64318302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	151	0	0	NA	exonic	Mtmr10	nonsynonymous SNV	Mtmr10:NM_172742:exon9:c.T878C:p.M293T	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9989167	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	65329716	12A2p6	cell line	sgMsh2	65329716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	66	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon9:c.A1060G:p.T354A,Tjp1:NM_009386:exon9:c.A1060G:p.T354A"	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	66125637	12A2p6	cell line	sgMsh2	66125637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	111	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon2:c.T713C:p.I238T	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.792348342	1	0.8033234	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	67733299	12A2p6	cell line	sgMsh2	67733299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	79	0	0	NA	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.T4614C:p.D1538D,Synm:NM_207663:exon5:c.T3708C:p.D1236D"	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9981888	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	68304559	12A2p6	cell line	sgMsh2	68304559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	28	0	0	NA	exonic	Fam169b	nonsynonymous SNV	"Fam169b:NM_001013811:exon3:c.T155C:p.L52P,Fam169b:NM_001374636:exon3:c.T170C:p.L57P"	7qC	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	2	1	1	0.9675851	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	75570003	12A2p6	cell line	sgMsh2	75570003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	201	0	0	NA	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon3:c.T153C:p.S51S	7qD1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	GTT	synonymous	NA	NA	NA	NA
SSC	chr7	76425893	12A2p6	cell line	sgMsh2	76425893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	84	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon15:c.T2038C:p.W680R	7qD1	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9833637	CTG	nonsynonymous	CCTG	8	CCTGCCTG	NA
SSC	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	107	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	CAG	synonymous	AGA	8	AGAAGAAG	NA
SSC	chr7	79098860	12A2p6	cell line	sgMsh2	79098860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	88	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon12:c.T3378C:p.D1126D,Acan:NM_007424:exon12:c.T3378C:p.D1126D"	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.73666981	2	0.557411	ATG	synonymous	NA	NA	NA	NA
SSC	chr7	79381782	12A2p6	cell line	sgMsh2	79381782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	58	0	0	NA	exonic	Rlbp1	nonsynonymous SNV	"Rlbp1:NM_001173483:exon5:c.T197A:p.L66Q,Rlbp1:NM_001357450:exon5:c.T197A:p.L66Q,Rlbp1:NM_020599:exon5:c.T197A:p.L66Q"	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.80091427	1	0.8314672	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	79455529	12A2p6	cell line	sgMsh2	79455529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	45	0	0	NA	exonic	Polg	nonsynonymous SNV	"Polg:NM_001360096:exon13:c.A1453G:p.T485A,Polg:NM_001360095:exon14:c.A538G:p.T180A,Polg:NM_017462:exon14:c.A2266G:p.T756A"	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.676708314	2	8.63E-06	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	79693990	12A2p6	cell line	sgMsh2	79693990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	178	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A3602G:p.D1201G	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.999999	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	79811118	12A2p6	cell line	sgMsh2	79811118	A	G	SNV	Mutect2;MuSe;Vardict	3	0.25	15	0	0	NA	exonic	Mesp2	nonsynonymous SNV	Mesp2:NM_008589:exon1:c.A190G:p.T64A	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.923697	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	79920545	12A2p6	cell line	sgMsh2	79920545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	33	0	0	NA	exonic	Ap3s2	synonymous SNV	Ap3s2:NM_009682:exon1:c.T33C:p.H11H	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9529097	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.148	27	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.633878673	1	0.000868679	GCC	synonymous	NA	NA	NA	NA
SSC	chr7	80325665	12A2p6	cell line	sgMsh2	80325665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	63	0	0	NA	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon20:c.A2790G:p.K930K	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	CTT	synonymous	NA	NA	NA	NA
SSC	chr7	80383918	12A2p6	cell line	sgMsh2	80383918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	72	0	0	NA	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon5:c.T584C:p.L195P	7qD2	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9984218	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	80620550	12A2p6	cell line	sgMsh2	80620550	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	117	0	0	NA	exonic	Crtc3	nonsynonymous SNV	Crtc3:NM_173863:exon4:c.T385G:p.S129A	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	80717097	12A2p6	cell line	sgMsh2	80717097	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	125	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon37:c.A4774T:p.I1592F	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7029616	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.129	32	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	0.552502357	2	0.755114	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.29	70	0	0	NA	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	GCA	synonymous	NA	NA	NA	NA
SSC	chr7	83982317	12A2p6	cell line	sgMsh2	83982317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	64	0	0	NA	exonic	Cemip	nonsynonymous SNV	Cemip:NM_030728:exon11:c.A1286G:p.N429S	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	84856814	12A2p6	cell line	sgMsh2	84856814	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	384	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T450G:p.T150T	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
SSC	chr7	84916353	12A2p6	cell line	sgMsh2	84916353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	309	0	0	NA	exonic	Olfr290	synonymous SNV	Olfr290:NM_146416:exon1:c.T573C:p.S191S	7qD3	chr7-10358623-84964281	4	2	2	0.96	4.11164545	NA	1	1	1	1.11E-09	CTA	synonymous	NA	NA	NA	NA
SSC	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	260	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-84994375-86226388	6	3	3	0.96	4.11164545	NA	1	0.90798837	1	0.9999894	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	85750671	12A2p6	cell line	sgMsh2	85750671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	632	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.T1154C:p.M385T	7qD3	chr7-84994375-86226388	6	3	3	0.96	4.11164545	NA	2	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	85958038	12A2p6	cell line	sgMsh2	85958038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	226	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A476G:p.E159G	7qD3	chr7-84994375-86226388	6	3	3	0.96	4.11164545	NA	1	0.920837262	1	0.9999852	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	85958137	12A2p6	cell line	sgMsh2	85958137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	223	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A377G:p.Y126C	7qD3	chr7-84994375-86226388	6	3	3	0.96	4.11164545	NA	2	1	1	4.54E-08	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	196	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86268842	12A2p6	cell line	sgMsh2	86268842	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	125	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.A946T:p.N316Y	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86269396	12A2p6	cell line	sgMsh2	86269396	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.02	407	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.C392T:p.P131L	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.08565928	3	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86321611	12A2p6	cell line	sgMsh2	86321611	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	165	0	0	NA	exonic	Olfr308	nonsynonymous SNV	Olfr308:NM_146621:exon1:c.C340A:p.L114I	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9999517	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	341	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	1.02E-09	CTG	synonymous	NA	NA	NA	NA
SSC	chr7	86585643	12A2p6	cell line	sgMsh2	86585643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	431	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.G367A:p.A123T	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9999999	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.341	230	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
SSC	chr7	86761817	12A2p6	cell line	sgMsh2	86761817	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	71	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon6:c.C716A:p.P239H,Folh1:NM_016770:exon6:c.C716A:p.P239H"	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	1	0.9983086	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	370	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	4.70E-09	TGT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86915528	12A2p6	cell line	sgMsh2	86915528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	178	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon1:c.T180C:p.S60S	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999968	GTG	synonymous	NA	NA	NA	NA
SSC	chr7	86920324	12A2p6	cell line	sgMsh2	86920324	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	207	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon2:c.T424A:p.W142R	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	86954408	12A2p6	cell line	sgMsh2	86954408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	298	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon6:c.T1793C:p.I598T	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.24E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	87323934	12A2p6	cell line	sgMsh2	87323934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	117	0	0	NA	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285833:exon11:c.A791G:p.Y264C,Nox4:NM_001285835:exon11:c.A791G:p.Y264C,Nox4:NM_015760:exon11:c.A1013G:p.Y338C"	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	88116222	12A2p6	cell line	sgMsh2	88116222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	67	0	0	NA	exonic	Grm5	nonsynonymous SNV	Grm5:NM_001143834:exon10:c.A2657G:p.K886R	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.8999928	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	90160587	12A2p6	cell line	sgMsh2	90160587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	119	0	0	NA	exonic	Picalm	synonymous SNV	"Picalm:NM_001252520:exon2:c.T270C:p.N90N,Picalm:NM_001252521:exon2:c.T270C:p.N90N,Picalm:NM_001252522:exon2:c.T270C:p.N90N,Picalm:NM_001252523:exon2:c.T270C:p.N90N,Picalm:NM_001252524:exon2:c.T270C:p.N90N,Picalm:NM_001360867:exon2:c.T270C:p.N90N,Picalm:NM_146194:exon2:c.T270C:p.N90N"	7qD3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.595331997	2	0.9984663	ATG	synonymous	NA	NA	NA	NA
SSC	chr7	92590164	12A2p6	cell line	sgMsh2	92590164	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	83	0	0	NA	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon11:c.A1415T:p.Q472L	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.214148201	3	0.999873	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	97223703	12A2p6	cell line	sgMsh2	97223703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	93	0	0	NA	exonic	Gab2	nonsynonymous SNV	"Gab2:NM_001162477:exon2:c.G312T:p.E104D,Gab2:NM_010248:exon2:c.G312T:p.E104D"	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996321	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	97662217	12A2p6	cell line	sgMsh2	97662217	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	111	0	0	NA	exonic	Rsf1	nonsynonymous SNV	Rsf1:NM_001081267:exon6:c.A2153T:p.N718I	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998945	AAC	nonsynonymous	GAAA	8	GAAAGAAA	NA
SSC	chr7	98352506	12A2p6	cell line	sgMsh2	98352506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	59	0	0	NA	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.T617C:p.L206P,Tsku:NM_001168539:exon2:c.T617C:p.L206P,Tsku:NM_001168540:exon3:c.T617C:p.L206P,Tsku:NM_001168541:exon4:c.T617C:p.L206P"	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9961186	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	98645172	12A2p6	cell line	sgMsh2	98645172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	0	0	NA	exonic	Emsy	synonymous SNV	"Emsy:NM_001381869:exon5:c.T282C:p.S94S,Emsy:NM_172280:exon5:c.T282C:p.S94S"	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	AAC	synonymous	NA	NA	NA	NA
SSC	chr7	98888183	12A2p6	cell line	sgMsh2	98888183	T	C	SNV	Mutect2;Vardict	2	0.174	21	0	0	NA	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon15:c.A1804G:p.S602G	7qE1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.745235738	1	0.752257	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	100649991	12A2p6	cell line	sgMsh2	100649991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	62	0	0	NA	exonic	Plekhb1	synonymous SNV	"Plekhb1:NM_001163186:exon5:c.T375C:p.V125V,Plekhb1:NM_001163183:exon6:c.T375C:p.V125V,Plekhb1:NM_013746:exon7:c.T432C:p.V144V"	7qE2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9968458	AAA	synonymous	NA	NA	NA	NA
SSC	chr7	101502032	12A2p6	cell line	sgMsh2	101502032	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	46	0	0	NA	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon10:c.C811A:p.L271M,Pde2a:NM_001008548:exon11:c.C832A:p.L278M,Pde2a:NM_001143848:exon11:c.C832A:p.L278M,Pde2a:NM_001243757:exon11:c.C775A:p.L259M,Pde2a:NM_001243758:exon11:c.C862A:p.L288M"	7qE2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.913829	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	101580262	12A2p6	cell line	sgMsh2	101580262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	exonic	Art2b	synonymous SNV	Art2b:NM_019915:exon2:c.A429G:p.L143L	7qE2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9999834	CTA	synonymous	TAAAC	12	TAAACTAAACTA	NA
SSC	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	90	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9861701	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	113	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.818046126	1	0.9154967	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	133	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999771	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	102877647	12A2p6	cell line	sgMsh2	102877647	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.237	202	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T526G:p.S176A	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	102877650	12A2p6	cell line	sgMsh2	102877650	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.235	204	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T529C:p.Y177H	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103155345	12A2p6	cell line	sgMsh2	103155345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	135	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A401G:p.Y134C	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999801	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103220304	12A2p6	cell line	sgMsh2	103220304	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	220	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G585T:p.K195N	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103250168	12A2p6	cell line	sgMsh2	103250168	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	307	0	0	NA	exonic	Usp17ld	nonsynonymous SNV	Usp17ld:NM_001001559:exon2:c.T1556G:p.L519R	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.13E-09	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103320697	12A2p6	cell line	sgMsh2	103320697	C	A	SNV	Mutect2;Vardict	2	0.019	276	0	0	NA	exonic	Olfr597	synonymous SNV	Olfr597:NM_001011845:exon1:c.C285A:p.A95A	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.081376316	3	1	CCT	synonymous	NA	NA	NA	NA
SSC	chr7	103470347	12A2p6	cell line	sgMsh2	103470347	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	253	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T307A:p.Y103N	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	6.54E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103470351	12A2p6	cell line	sgMsh2	103470351	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	252	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T311G:p.F104C	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	6.94E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	103506420	12A2p6	cell line	sgMsh2	103506420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.231	136	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T525C:p.A175A	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9999697	GAG	synonymous	NA	NA	NA	NA
SSC	chr7	103561109	12A2p6	cell line	sgMsh2	103561109	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	255	0	0	NA	exonic	Olfr615	nonsynonymous SNV	Olfr615:NM_147080:exon1:c.G631A:p.D211N	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.848026874	1	0.9978094	GGA	nonsynonymous	T	5	TTTTT	NA
SSC	chr7	103740314	12A2p6	cell line	sgMsh2	103740314	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	66	0	0	NA	exonic	Olfr629	frameshift deletion	Olfr629:NM_146821:exon1:c.925delT:p.S309Lfs*8	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.946535046	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr7	104049838	12A2p6	cell line	sgMsh2	104049838	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	132	0	0	NA	exonic	Olfr642	nonsynonymous SNV	Olfr642:NM_146329:exon1:c.A515T:p.K172M	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.19273338	3	3.67E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104084873	12A2p6	cell line	sgMsh2	104084873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	161	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.C206T:p.S69F	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.6128389	AGA	nonsynonymous	ACAG	8	ACAGACAG	NA
SSC	chr7	104274785	12A2p6	cell line	sgMsh2	104274785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	90	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon5:c.A758G:p.N253S	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104329644	12A2p6	cell line	sgMsh2	104329644	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	83	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon1:c.C97A:p.L33I	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	1	0.9992638	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104472252	12A2p6	cell line	sgMsh2	104472252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	259	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon7:c.A835G:p.S279G,Trim30d:NM_199146:exon8:c.A1285G:p.S429G"	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	4.65E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	124	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999572	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104579774	12A2p6	cell line	sgMsh2	104579774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	158	0	0	NA	exonic	Olfr653	nonsynonymous SNV	Olfr653:NM_147074:exon1:c.C127A:p.L43I	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9998631	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	201	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999994	TCC	synonymous	NA	NA	NA	NA
SSC	chr7	104859419	12A2p6	cell line	sgMsh2	104859419	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	346	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon2:c.A27C:p.E9D	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	105368670	12A2p6	cell line	sgMsh2	105368670	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	153	0	0	NA	exonic	Olfr692	nonsynonymous SNV	Olfr692:NM_146355:exon1:c.A343C:p.M115L	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999943	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	142	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr7	105619140	12A2p6	cell line	sgMsh2	105619140	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	23	0	0	NA	exonic	Trim3	nonsynonymous SNV	"Trim3:NM_001285870:exon4:c.A434C:p.E145A,Trim3:NM_001285871:exon4:c.A434C:p.E145A,Trim3:NM_001285873:exon4:c.A434C:p.E145A,Trim3:NM_001360425:exon4:c.A452C:p.E151A,Trim3:NM_018880:exon4:c.A434C:p.E145A"	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9547465	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	106805883	12A2p6	cell line	sgMsh2	106805883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	283	0	0	NA	exonic	Olfr700	nonsynonymous SNV	Olfr700:NM_146600:exon1:c.C578T:p.S193F	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.69E-09	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	106886521	12A2p6	cell line	sgMsh2	106886521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	256	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.C295A:p.L99I	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	106944593	12A2p6	cell line	sgMsh2	106944593	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	228	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T407A:p.M136K	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9999637	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	198	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9998849	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	107744242	12A2p6	cell line	sgMsh2	107744242	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	59	0	0	NA	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon21:c.T2037G:p.D679E,Ppfibp2:NM_001357437:exon22:c.T2256G:p.D752E,Ppfibp2:NM_001357436:exon23:c.T2289G:p.D763E,Ppfibp2:NM_001163557:exon24:c.T2487G:p.D829E,Ppfibp2:NM_008905:exon25:c.T2520G:p.D840E"	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9961186	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	107845192	12A2p6	cell line	sgMsh2	107845192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	437	0	0	NA	exonic	Olfr470	stopgain	Olfr470:NM_146425:exon1:c.T540A:p.Y180X	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	107933840	12A2p6	cell line	sgMsh2	107933840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	402	0	0	NA	exonic	Olfr473	nonsynonymous SNV	Olfr473:NM_146775:exon1:c.T319G:p.F107V	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	107990375	12A2p6	cell line	sgMsh2	107990375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	151	0	0	NA	exonic	Olfr477	synonymous SNV	Olfr477:NM_146926:exon1:c.T9C:p.A3A	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9997059	CTC	synonymous	NA	NA	NA	NA
SSC	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	264	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	3.58E-09	ATG	nonsynonymous	G	5	GGGGG	NA
SSC	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	365	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	1.04E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	108159767	12A2p6	cell line	sgMsh2	108159767	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	526	0	0	NA	exonic	Olfr485	synonymous SNV	Olfr485:NM_001011810:exon1:c.C105T:p.S35S	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1	TGC	synonymous	NA	NA	NA	NA
SSC	chr7	108323210	12A2p6	cell line	sgMsh2	108323210	C	-	Deletion	Strelka2;Vardict	2	0.203	527	0	0	NA	exonic	Olfr492	frameshift deletion	Olfr492:NM_146497:exon1:c.465delG:p.I156Ffs*7	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.869441694	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC	chr7	108466106	12A2p6	cell line	sgMsh2	108466106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	576	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A781G:p.I261V	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.229	352	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	1.06E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	108845505	12A2p6	cell line	sgMsh2	108845505	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	381	0	0	NA	exonic	Olfr516	synonymous SNV	Olfr516:NM_146725:exon1:c.C504T:p.Y168Y	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	AGT	synonymous	NA	NA	NA	NA
SSC	chr7	109477730	12A2p6	cell line	sgMsh2	109477730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	52	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon8:c.T1001C:p.L334P,Trim66:NM_001170913:exon8:c.T695C:p.L232P,Trim66:NM_181853:exon8:c.T695C:p.L232P"	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.723820918	1	0.5580956	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	109483656	12A2p6	cell line	sgMsh2	109483656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	54	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon4:c.T578C:p.V193A,Trim66:NM_001170913:exon4:c.T272C:p.V91A,Trim66:NM_181853:exon4:c.T272C:p.V91A"	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.7539215	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	110130973	12A2p6	cell line	sgMsh2	110130973	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	153	0	0	NA	exonic	Wee1	nonsynonymous SNV	Wee1:NM_009516:exon6:c.C1283A:p.P428H	7qE3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999943	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	112894458	12A2p6	cell line	sgMsh2	112894458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.A1161G:p.I387M,Tead1:NM_009346:exon12:c.A1173G:p.I391M,Tead1:NM_001166584:exon13:c.A1236G:p.I412M"	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8772158	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	265	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9999972	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	114232282	12A2p6	cell line	sgMsh2	114232282	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	135	0	0	NA	exonic	Copb1	nonsynonymous SNV	Copb1:NM_033370:exon14:c.G1630T:p.G544W	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.749518702	2	0.6333586	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	116158057	12A2p6	cell line	sgMsh2	116158057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	34	0	0	NA	exonic	Plekha7	nonsynonymous SNV	"Plekha7:NM_001305186:exon9:c.A1519G:p.S507G,Plekha7:NM_001305189:exon9:c.A1342G:p.S448G,Plekha7:NM_001305190:exon9:c.A1471G:p.S491G,Plekha7:NM_172743:exon9:c.A949G:p.S317G,Plekha7:NM_001305185:exon11:c.A1657G:p.S553G"	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	1	0.9783868	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	117549082	12A2p6	cell line	sgMsh2	117549082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	104	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon3:c.T880C:p.F294L	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	118490892	12A2p6	cell line	sgMsh2	118490892	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.211	53	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.T443A:p.L148Q	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.903705406	1	0.9681814	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	118543426	12A2p6	cell line	sgMsh2	118543426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	77	0	0	NA	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon13:c.A1738G:p.S580G	7qF1	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.998884	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	119449012	12A2p6	cell line	sgMsh2	119449012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	128	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon8:c.A1373G:p.Y458C	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999676	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	119489529	12A2p6	cell line	sgMsh2	119489529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	85	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.A1248G:p.K416K	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993592	ATT	synonymous	NA	NA	NA	NA
SSC	chr7	119578155	12A2p6	cell line	sgMsh2	119578155	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	171	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon6:c.G892T:p.A298S,Acsm2:NM_001177978:exon6:c.G817T:p.A273S,Acsm2:NM_146197:exon6:c.G817T:p.A273S"	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9999723	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	125	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9984083	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	121500719	12A2p6	cell line	sgMsh2	121500719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	exonic	Hs3st2	nonsynonymous SNV	Hs3st2:NM_001081327:exon2:c.T787C:p.Y263H	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	121935740	12A2p6	cell line	sgMsh2	121935740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	74	0	0	NA	exonic	Cog7	nonsynonymous SNV	Cog7:NM_001033318:exon13:c.T1721C:p.L574P	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.937969118	1	0.9936024	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	121971366	12A2p6	cell line	sgMsh2	121971366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	148	0	0	NA	exonic	Cog7	frameshift deletion	Cog7:NM_001033318:exon4:c.518delA:p.K173Sfs*7	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.976515794	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr7	122071974	12A2p6	cell line	sgMsh2	122071974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	90	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon5:c.C872T:p.T291I	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9966404	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	122076189	12A2p6	cell line	sgMsh2	122076189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	87	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon6:c.T995C:p.M332T	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.818046126	1	0.8974077	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	122181574	12A2p6	cell line	sgMsh2	122181574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	119	0	0	NA	exonic	Ern2	nonsynonymous SNV	"Ern2:NM_001316689:exon5:c.G353T:p.S118I,Ern2:NM_012016:exon5:c.G353T:p.S118I"	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	122671909	12A2p6	cell line	sgMsh2	122671909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	128	0	0	NA	exonic	Cacng3	nonsynonymous SNV	Cacng3:NM_019430:exon1:c.A136G:p.S46G	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9988251	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	122999884	12A2p6	cell line	sgMsh2	122999884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	87	0	0	NA	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon17:c.A3417G:p.L1139L	7qF2	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7390907	TAC	synonymous	NA	NA	NA	NA
SSC	chr7	126468816	12A2p6	cell line	sgMsh2	126468816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	112	0	0	NA	exonic	Sh2b1	synonymous SNV	"Sh2b1:NM_001081459:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289538:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289539:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289541:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289542:exon7:c.C1665A:p.R555R,Sh2b1:NM_011363:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289540:exon8:c.C1665A:p.R555R"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999016	GGC	synonymous	NA	NA	NA	NA
SSC	chr7	126547831	12A2p6	cell line	sgMsh2	126547831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	88	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon17:c.T2268G:p.N756K	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	126552054	12A2p6	cell line	sgMsh2	126552054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	85	0	0	NA	exonic	Eif3c	synonymous SNV	Eif3c:NM_146200:exon16:c.T2097C:p.H699H	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9669546	CAT	synonymous	NA	NA	NA	NA
SSC	chr7	126586228	12A2p6	cell line	sgMsh2	126586228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	119	0	0	NA	exonic	Apobr	nonsynonymous SNV	Apobr:NM_138310:exon2:c.A910G:p.T304A	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	126587412	12A2p6	cell line	sgMsh2	126587412	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	75	0	0	NA	exonic	Apobr	synonymous SNV	Apobr:NM_138310:exon2:c.C2094T:p.G698G	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.9968017	GCT	synonymous	NA	NA	NA	NA
SSC	chr7	126998574	12A2p6	cell line	sgMsh2	126998574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	139	0	0	NA	exonic	Mvp	nonsynonymous SNV	Mvp:NM_080638:exon4:c.T371C:p.V124A	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999849	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127051630	12A2p6	cell line	sgMsh2	127051630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	138	0	0	NA	exonic	Zg16	nonsynonymous SNV	Zg16:NM_026918:exon3:c.T185C:p.V62A	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9996488	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127560756	12A2p6	cell line	sgMsh2	127560756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	82	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.A9803G:p.K3268R	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.999211	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127583520	12A2p6	cell line	sgMsh2	127583520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	64	0	0	NA	exonic	Ccdc189	nonsynonymous SNV	"Ccdc189:NM_001382406:exon8:c.T776C:p.L259P,Ccdc189:NM_001033040:exon9:c.T893C:p.L298P"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9972535	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	125	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9996846	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127783648	12A2p6	cell line	sgMsh2	127783648	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	140	0	0	NA	exonic	Setd1a	stopgain	Setd1a:NM_178029:exon5:c.C537A:p.Y179X	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.19273338	3	1.26E-08	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	127867162	12A2p6	cell line	sgMsh2	127867162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	76	0	0	NA	exonic	Zfp668	synonymous SNV	"Zfp668:NM_001362190:exon3:c.A849G:p.P283P,Zfp668:NM_001362191:exon3:c.A849G:p.P283P,Zfp668:NM_146259:exon3:c.A849G:p.P283P,Zfp668:NM_001362189:exon4:c.A849G:p.P283P,Zfp668:NM_001362192:exon5:c.A849G:p.P283P"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.67242535	2	0.8378957	GTG	synonymous	NA	NA	NA	NA
SSC	chr7	127878688	12A2p6	cell line	sgMsh2	127878688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	201	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.C36T:p.D12D	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.95081801	1	0.9999943	ACT	synonymous	NA	NA	NA	NA
SSC	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	224	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	128086037	12A2p6	cell line	sgMsh2	128086037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	152	0	0	NA	exonic	Itgam	nonsynonymous SNV	"Itgam:NM_001082960:exon12:c.A1321G:p.T441A,Itgam:NM_008401:exon12:c.A1321G:p.T441A"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999939	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	128185792	12A2p6	cell line	sgMsh2	128185792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	65	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon9:c.T976C:p.Y326H	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	1	0.9974372	CTA	nonsynonymous	GCTAT	10	GCTATGCTAT	NA
SSC	chr7	128237187	12A2p6	cell line	sgMsh2	128237187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	156	0	0	NA	exonic	9130023H24Rik	nonsynonymous SNV	9130023H24Rik:NM_177001:exon1:c.A233G:p.K78R	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.999904	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	128682320	12A2p6	cell line	sgMsh2	128682320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	193	0	0	NA	exonic	Inpp5f	nonsynonymous SNV	Inpp5f:NM_178641:exon14:c.T1642C:p.Y548H	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	131335518	12A2p6	cell line	sgMsh2	131335518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	110	0	0	NA	exonic	Fam24a	synonymous SNV	Fam24a:NM_183272:exon2:c.T10C:p.L4L	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9981996	CTT	synonymous	NA	NA	NA	NA
SSC	chr7	133723166	12A2p6	cell line	sgMsh2	133723166	A	C	SNV	Mutect2;Vardict	2	0.051	78	0	0	NA	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon9:c.T1361G:p.V454G,Dhx32:NM_001286030:exon10:c.T1781G:p.V594G,Dhx32:NM_001286031:exon10:c.T1781G:p.V594G,Dhx32:NM_001357685:exon10:c.T1736G:p.V579G,Dhx32:NM_133941:exon10:c.T1781G:p.V594G"	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.218431165	3	0.9996976	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	135152261	12A2p6	cell line	sgMsh2	135152261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	92	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon47:c.C4766T:p.A1589V	7qF3	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr7	139661032	12A2p6	cell line	sgMsh2	139661032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	56	0	0	NA	exonic	Cfap46	synonymous SNV	Cfap46:NM_001302546:exon12:c.T1420C:p.L474L	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.99364765	1	0.994621	AAC	synonymous	NA	NA	NA	NA
SSC	chr7	139986776	12A2p6	cell line	sgMsh2	139986776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	157	0	0	NA	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon15:c.T1579A:p.F527I,Adam8:NM_007403:exon15:c.T1582A:p.F528I"	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999957	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	140336044	12A2p6	cell line	sgMsh2	140336044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	286	0	0	NA	exonic	Olfr527	nonsynonymous SNV	Olfr527:NM_001011776:exon1:c.C181A:p.L61M	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	1.56E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	84	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
SSC	chr7	141162882	12A2p6	cell line	sgMsh2	141162882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	78	0	0	NA	exonic	Rnh1	nonsynonymous SNV	"Rnh1:NM_001172100:exon7:c.T911C:p.L304S,Rnh1:NM_001172101:exon7:c.T1019C:p.L340S,Rnh1:NM_145135:exon7:c.T911C:p.L304S"	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9989588	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr7	141271804	12A2p6	cell line	sgMsh2	141271804	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	103	0	0	NA	exonic	Cdhr5	nonsynonymous SNV	Cdhr5:NM_001114322:exon13:c.T1586C:p.L529P	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998162	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	141278716	12A2p6	cell line	sgMsh2	141278716	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	104	0	0	NA	exonic;splicing	Sct;Sct	nonsynonymous SNV	"Sct:NM_001287171:exon3:c.G192T:p.Q64H,Sct:NM_011328:exon3:c.G192T:p.Q64H"	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr7	141870907	12A2p6	cell line	sgMsh2	141870907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	129	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon46:c.T13972G:p.C4658G	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9875301	CTG	nonsynonymous	ACTGC	11	ACTGCACTGCA	NA
SSC	chr7	142377375	12A2p6	cell line	sgMsh2	142377375	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	114	0	0	NA	exonic	Ctsd	nonsynonymous SNV	Ctsd:NM_009983:exon6:c.T779C:p.L260P	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.231280057	3	0.9999886	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr7	144410734	12A2p6	cell line	sgMsh2	144410734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	102	0	0	NA	exonic	Shank2	nonsynonymous SNV	"Shank2:NM_001081370:exon10:c.A2078G:p.Y693C,Shank2:NM_001113373:exon15:c.A2708G:p.Y903C"	7qF5	chr7-86227872-145323643	4	2	2	0.96	4.11164545	NA	1	0.573917177	2	0.9977165	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	3851259	12A2p6	cell line	sgMsh2	3851259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	185	0	0	NA	exonic	Cd209e	nonsynonymous SNV	Cd209e:NM_130905:exon5:c.A394G:p.S132G	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	CTA	nonsynonymous	T	5	TTTTT	NA
SSC	chr8	4250582	12A2p6	cell line	sgMsh2	4250582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	39	0	0	NA	exonic	Tgfbr3l	synonymous SNV	Tgfbr3l:NM_001195258:exon5:c.T759C:p.G253G	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.642444602	2	9.25E-05	GTG	synonymous	NA	NA	NA	NA
SSC	chr8	4516958	12A2p6	cell line	sgMsh2	4516958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	79	0	0	NA	exonic	Cers4	nonsynonymous SNV	Cers4:NM_026058:exon3:c.T259C:p.Y87H	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.488257897	2	0.9981679	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	5105121	12A2p6	cell line	sgMsh2	5105121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	130	0	0	NA	exonic	Slc10a2	synonymous SNV	Slc10a2:NM_011388:exon1:c.A63G:p.V21V	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	GTA	synonymous	NA	NA	NA	NA
SSC	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	266	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	3.25E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
SSC	chr8	9972537	12A2p6	cell line	sgMsh2	9972537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	186	0	0	NA	exonic	Lig4	synonymous SNV	"Lig4:NM_001377042:exon2:c.A1242G:p.V414V,Lig4:NM_176953:exon2:c.A1242G:p.V414V"	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999994	CTA	synonymous	NA	NA	NA	NA
SSC	chr8	10554634	12A2p6	cell line	sgMsh2	10554634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	59	0	0	NA	exonic	Myo16	nonsynonymous SNV	Myo16:NM_001319151:exon29:c.T3413G:p.L1138R	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.7481517	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	11633005	12A2p6	cell line	sgMsh2	11633005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	69	0	0	NA	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon2:c.T221C:p.M74T,Ankrd10:NM_133971:exon2:c.T221C:p.M74T"	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.621029781	2	0.9275612	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	12812332	12A2p6	cell line	sgMsh2	12812332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	190	0	0	NA	exonic	Atp11a	nonsynonymous SNV	"Atp11a:NM_001293667:exon3:c.A183G:p.I61M,Atp11a:NM_001293668:exon3:c.A183G:p.I61M,Atp11a:NM_015804:exon3:c.A183G:p.I61M"	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	85	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9993592	TCG	synonymous	NA	NA	NA	NA
SSC	chr8	13454216	12A2p6	cell line	sgMsh2	13454216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	106	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon4:c.A344G:p.Y115C,Tmem255b:NM_001143671:exon5:c.A407G:p.Y136C"	8qA1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	15945033	12A2p6	cell line	sgMsh2	15945033	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	136	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon52:c.C8001A:p.L2667L	8qA1.2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999814	AGA	synonymous	NA	NA	NA	NA
SSC	chr8	18632154	12A2p6	cell line	sgMsh2	18632154	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	97	0	0	NA	exonic	Mcph1	nonsynonymous SNV	Mcph1:NM_173189:exon8:c.G1306T:p.G436C	8qA1.3	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9997213	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	19195133	12A2p6	cell line	sgMsh2	19195133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	80	0	0	NA	exonic	Defb14	nonsynonymous SNV	Defb14:NM_183026:exon2:c.T125C:p.V42A	8qA1.3	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990936	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Vardict	2	0.069	72	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.295524517	3	0.9637466	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	22775632	12A2p6	cell line	sgMsh2	22775632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	79	0	0	NA	exonic	Plat	synonymous SNV	Plat:NM_008872:exon8:c.C690A:p.S230S	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.561068285	2	0.9911782	CCC	synonymous	NA	NA	NA	NA
SSC	chr8	22782006	12A2p6	cell line	sgMsh2	22782006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	84	0	0	NA	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon14:c.T1580C:p.I527T	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9993132	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	23119085	12A2p6	cell line	sgMsh2	23119085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	110	0	0	NA	exonic	Ank1	synonymous SNV	"Ank1:NM_001277280:exon32:c.T3981C:p.F1327F,Ank1:NM_001277281:exon32:c.T3870C:p.F1290F,Ank1:NM_001277284:exon32:c.T3870C:p.F1290F,Ank1:NM_001110783:exon33:c.T4005C:p.F1335F,Ank1:NM_001277286:exon33:c.T3918C:p.F1306F,Ank1:NM_001277289:exon33:c.T3918C:p.F1306F,Ank1:NM_031158:exon33:c.T3918C:p.F1306F"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9998869	TTG	synonymous	NA	NA	NA	NA
SSC	chr8	23182849	12A2p6	cell line	sgMsh2	23182849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	56	0	0	NA	exonic	Gpat4	nonsynonymous SNV	Gpat4:NM_018743:exon4:c.A350G:p.Y117C	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.890856514	1	0.9638944	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	24646316	12A2p6	cell line	sgMsh2	24646316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	132	0	0	NA	exonic	Adam18	synonymous SNV	Adam18:NM_010084:exon12:c.A1188G:p.E396E	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999754	CTT	synonymous	NA	NA	NA	NA
SSC	chr8	24921299	12A2p6	cell line	sgMsh2	24921299	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	133	0	0	NA	exonic	Adam32	stopgain	"Adam32:NM_001293693:exon5:c.C345A:p.C115X,Adam32:NM_153397:exon5:c.C345A:p.C115X"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.389749725	2	0.8857529	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	24996778	12A2p6	cell line	sgMsh2	24996778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	109	0	0	NA	exonic	Adam9	nonsynonymous SNV	"Adam9:NM_001270996:exon6:c.A483G:p.I161M,Adam9:NM_007404:exon6:c.A483G:p.I161M"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	25593815	12A2p6	cell line	sgMsh2	25593815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	111	0	0	NA	exonic	Letm2	synonymous SNV	"Letm2:NM_001364069:exon3:c.A399G:p.K133K,Letm2:NM_173012:exon3:c.A399G:p.K133K"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9992246	CTT	synonymous	NA	NA	NA	NA
SSC	chr8	25954655	12A2p6	cell line	sgMsh2	25954655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon12:c.A1264C:p.S422R	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9811351	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	27115250	12A2p6	cell line	sgMsh2	27115250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	54	0	0	NA	exonic	Adgra2	nonsynonymous SNV	Adgra2:NM_054044:exon12:c.T1622C:p.V541A	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.989364686	1	0.9933573	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	125	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999601	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	27156404	12A2p6	cell line	sgMsh2	27156404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	96	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	"Rab11fip1:NM_001080813:exon2:c.A643G:p.K215E,Rab11fip1:NM_029423:exon2:c.A643G:p.K215E"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.278392661	3	0.997615	TTT	nonsynonymous	T	5	TTTTT	NA
SSC	chr8	27394299	12A2p6	cell line	sgMsh2	27394299	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	116	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon4:c.A1018G:p.M340V,Chrnb3:NM_173212:exon5:c.A1063G:p.M355V"	8qA2	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.475409005	2	0.9998903	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	33292568	12A2p6	cell line	sgMsh2	33292568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	159	0	0	NA	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon19:c.A2333G:p.D778G,Wrn:NM_011721:exon19:c.A2333G:p.D778G"	8qA3	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999962	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	33582162	12A2p6	cell line	sgMsh2	33582162	-	A	Insertion	Strelka2;Vardict	2	0.125	128	0	0	NA	exonic	Tex15	frameshift insertion	Tex15:NM_031374:exon3:c.7737dupA:p.S2582Kfs*3	8qA3	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.535370501	NA	NA	CCA	frameshift	A	8	AAAAAAAA	1
SSC	chr8	33776515	12A2p6	cell line	sgMsh2	33776515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	0	0	NA	exonic	Gtf2e2	nonsynonymous SNV	"Gtf2e2:NM_001167921:exon8:c.T825G:p.N275K,Gtf2e2:NM_001167922:exon8:c.T825G:p.N275K,Gtf2e2:NM_026584:exon8:c.T825G:p.N275K"	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	34873091	12A2p6	cell line	sgMsh2	34873091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	121	0	0	NA	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon8:c.A1372G:p.N458D	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	36994085	12A2p6	cell line	sgMsh2	36994085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	115	0	0	NA	exonic	AI429214	nonsynonymous SNV	AI429214:NM_001039220:exon1:c.A386G:p.D129G	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999201	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	41083655	12A2p6	cell line	sgMsh2	41083655	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	134	0	0	NA	exonic	Mtus1	synonymous SNV	"Mtus1:NM_001005863:exon2:c.T1023C:p.D341D,Mtus1:NM_001286413:exon2:c.T1023C:p.D341D"	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.462560113	2	0.9999028	CAT	synonymous	NA	NA	NA	NA
SSC	chr8	43520956	12A2p6	cell line	sgMsh2	43520956	A	G	SNV	Mutect2;MuSe;Vardict	3	0.05	386	0	0	NA	exonic	Adam26b	synonymous SNV	Adam26b:NM_001009547:exon2:c.T1008C:p.G336G	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	0.214148201	3	1	TAC	synonymous	NA	NA	NA	NA
SSC	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	466	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	46556178	12A2p6	cell line	sgMsh2	46556178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	104	0	0	NA	exonic	Cenpu	nonsynonymous SNV	"Cenpu:NM_001368403:exon3:c.A187G:p.T63A,Cenpu:NM_027973:exon3:c.A187G:p.T63A"	8qB1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	79	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
SSC	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	119	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999394	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	100	0	0	NA	exonic;splicing	Aga;Aga	nonsynonymous SNV	Aga:NM_001005847:exon7:c.G706T:p.G236W	8qB1.3	chr8-3154030-57551501	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997736	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	68	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9979179	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	65014576	12A2p6	cell line	sgMsh2	65014576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	109	0	0	NA	exonic	Trim61	nonsynonymous SNV	"Trim61:NM_001177551:exon2:c.A32G:p.Q11R,Trim61:NM_153110:exon3:c.A32G:p.Q11R"	8qB3.1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998788	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	66418914	12A2p6	cell line	sgMsh2	66418914	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	85	0	0	NA	exonic	Marchf1	nonsynonymous SNV	"Marchf1:NM_001166375:exon2:c.G311T:p.W104L,Marchf1:NM_001166372:exon6:c.G341T:p.W114L,Marchf1:NM_001363123:exon6:c.G329T:p.W110L,Marchf1:NM_001363125:exon6:c.G329T:p.W110L,Marchf1:NM_175188:exon6:c.G329T:p.W110L,Marchf1:NM_001293784:exon7:c.G341T:p.W114L,Marchf1:NM_001363124:exon7:c.G341T:p.W114L"	8qB3.1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9993592	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	66511988	12A2p6	cell line	sgMsh2	66511988	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	107	0	0	NA	exonic	Tktl2	nonsynonymous SNV	"Tktl2:NM_001271574:exon1:c.A197C:p.E66A,Tktl2:NM_028927:exon1:c.A197C:p.E66A"	8qB3.1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998607	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	68346072	12A2p6	cell line	sgMsh2	68346072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	45	0	0	NA	exonic	Sh2d4a	nonsynonymous SNV	Sh2d4a:NM_028182:exon8:c.T1072C:p.C358R	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9898092	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	69815491	12A2p6	cell line	sgMsh2	69815491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	87	0	0	NA	exonic	Gmip	nonsynonymous SNV	Gmip:NM_198101:exon12:c.G1194T:p.E398D	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9994422	AGG	nonsynonymous	GGA	11	GGAGGAGGAGG	NA
SSC	chr8	70112056	12A2p6	cell line	sgMsh2	70112056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	0	0	NA	exonic	Ncan	nonsynonymous SNV	Ncan:NM_007789:exon6:c.T907C:p.C303R	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9448483	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	70135080	12A2p6	cell line	sgMsh2	70135080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	76	0	0	NA	exonic	Rfxank	synonymous SNV	"Rfxank:NM_001025589:exon6:c.T520C:p.L174L,Rfxank:NM_011266:exon6:c.T550C:p.L184L"	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9988039	AAC	synonymous	NA	NA	NA	NA
SSC	chr8	70174385	12A2p6	cell line	sgMsh2	70174385	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	57	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	Tmem161a:NM_145597:exon2:c.G86A:p.R29H	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9955432	CGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
SSC	chr8	70251633	12A2p6	cell line	sgMsh2	70251633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	39	0	0	NA	exonic	Sugp2	nonsynonymous SNV	"Sugp2:NM_001168290:exon5:c.A1819G:p.S607G,Sugp2:NM_172755:exon5:c.A1819G:p.S607G"	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9846265	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	70386210	12A2p6	cell line	sgMsh2	70386210	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	61	0	0	NA	exonic	Crtc1	synonymous SNV	Crtc1:NM_001004062:exon14:c.C1807T:p.L603L	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9966199	AGG	synonymous	NA	NA	NA	NA
SSC	chr8	71537373	12A2p6	cell line	sgMsh2	71537373	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.353	49	0	0	NA	exonic	Bst2	frameshift insertion	Bst2:NM_198095:exon1:c.54dupG:p.K19Efs*40	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	TTC	frameshift	C	5	CCCCC	1
SSC	chr8	71684012	12A2p6	cell line	sgMsh2	71684012	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.384	87	0	0	NA	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC	chr8	71684069	12A2p6	cell line	sgMsh2	71684069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	123	0	0	NA	exonic	Jak3	synonymous SNV	"Jak3:NM_001190830:exon15:c.T2019C:p.T673T,Jak3:NM_010589:exon15:c.T2019C:p.T673T"	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999541	CTG	synonymous	NA	NA	NA	NA
SSC	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	42	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9874799	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
SSC	chr8	75050209	12A2p6	cell line	sgMsh2	75050209	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	136	0	0	NA	exonic	Tom1	nonsynonymous SNV	"Tom1:NM_001136259:exon3:c.G157A:p.A53T,Tom1:NM_011622:exon3:c.G157A:p.A53T"	8qC1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999814	AGC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	78436366	12A2p6	cell line	sgMsh2	78436366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	57	0	0	NA	exonic	Pou4f2	nonsynonymous SNV	Pou4f2:NM_138944:exon1:c.C39A:p.S13R	8qC1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9955432	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	83929624	12A2p6	cell line	sgMsh2	83929624	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	134	0	0	NA	exonic	Adgrl1	stopgain	Adgrl1:NM_181039:exon5:c.T555A:p.Y185X	8qC2	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999786	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	84234985	12A2p6	cell line	sgMsh2	84234985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	49	0	0	NA	exonic	Zswim4	synonymous SNV	Zswim4:NM_172503:exon2:c.A258G:p.E86E	8qC2	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9922605	CTT	synonymous	NA	NA	NA	NA
SSC	chr8	84915523	12A2p6	cell line	sgMsh2	84915523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	100	0	0	NA	exonic	Mast1	synonymous SNV	Mast1:NM_019945:exon24:c.G3201A:p.R1067R	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.937969118	1	0.998181	GCC	synonymous	NA	NA	NA	NA
SSC	chr8	85001225	12A2p6	cell line	sgMsh2	85001225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	54	0	0	NA	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001372361:exon16:c.A1498G:p.T500A,Hook2:NM_001372357:exon17:c.A1903G:p.T635A,Hook2:NM_001372360:exon17:c.A1666G:p.T556A,Hook2:NM_001167991:exon18:c.A1705G:p.T569A,Hook2:NM_001372358:exon18:c.A1705G:p.T569A,Hook2:NM_001372359:exon18:c.A1705G:p.T569A,Hook2:NM_001372362:exon18:c.A1300G:p.T434A,Hook2:NM_133255:exon18:c.A1705G:p.T569A,Hook2:NM_001363497:exon19:c.A1714G:p.T572A,Hook2:NM_001363498:exon19:c.A1633G:p.T545A"	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.916554298	1	0.9755333	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	87471767	12A2p6	cell line	sgMsh2	87471767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	64	0	0	NA	exonic	Cbln1	synonymous SNV	Cbln1:NM_019626:exon2:c.T309C:p.T103T	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9972535	AAG	synonymous	NA	NA	NA	NA
SSC	chr8	87568546	12A2p6	cell line	sgMsh2	87568546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	84	0	0	NA	exonic	4933402J07Rik	nonsynonymous SNV	4933402J07Rik:NM_177901:exon3:c.T311C:p.I104T	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9993132	ATA	nonsynonymous	GAAAT	10	GAAATGAAAT	NA
SSC	chr8	87782994	12A2p6	cell line	sgMsh2	87782994	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	59	0	0	NA	exonic	Zfp423	nonsynonymous SNV	"Zfp423:NM_001310520:exon2:c.T346A:p.S116T,Zfp423:NM_033327:exon4:c.T721A:p.S241T"	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9961186	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	88156793	12A2p6	cell line	sgMsh2	88156793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	141	0	0	NA	exonic	Heatr3	nonsynonymous SNV	Heatr3:NM_172757:exon9:c.A1253G:p.H418R	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999868	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	88591669	12A2p6	cell line	sgMsh2	88591669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	46	0	0	NA	exonic	Nkd1	synonymous SNV	"Nkd1:NM_001163660:exon8:c.A621G:p.Q207Q,Nkd1:NM_027280:exon10:c.A933G:p.Q311Q"	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.990486	AAG	synonymous	NA	NA	NA	NA
SSC	chr8	88684467	12A2p6	cell line	sgMsh2	88684467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	68	0	0	NA	exonic	Nod2	synonymous SNV	Nod2:NM_145857:exon11:c.C2907A:p.T969T	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9979179	CCT	synonymous	NA	NA	NA	NA
SSC	chr8	88705480	12A2p6	cell line	sgMsh2	88705480	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	101	0	0	NA	exonic	Cyld	synonymous SNV	"Cyld:NM_001128170:exon2:c.T105G:p.T35T,Cyld:NM_173369:exon2:c.T105G:p.T35T,Cyld:NM_001128171:exon3:c.T105G:p.T35T,Cyld:NM_001276279:exon3:c.T105G:p.T35T"	8qC3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997888	CTC	synonymous	ACAA	10	ACAAACAAAC	NA
SSC	chr8	92678500	12A2p6	cell line	sgMsh2	92678500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	57	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.C995T:p.T332M,Irx6:NM_022428:exon5:c.C995T:p.T332M"	8qC5	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9955432	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	95011799	12A2p6	cell line	sgMsh2	95011799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	88	0	0	NA	exonic	Adgrg1	nonsynonymous SNV	"Adgrg1:NM_001198894:exon13:c.T1919C:p.I640T,Adgrg1:NM_018882:exon13:c.T1919C:p.I640T"	8qC5	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.402598617	2	0.9336667	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr8	105049902	12A2p6	cell line	sgMsh2	105049902	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	151	0	0	NA	exonic	Ces3a	nonsynonymous SNV	"Ces3a:NM_001164681:exon2:c.A121T:p.T41S,Ces3a:NM_198672:exon2:c.A121T:p.T41S"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999934	TAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr8	105308779	12A2p6	cell line	sgMsh2	105308779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	65	0	0	NA	exonic	Elmo3	synonymous SNV	Elmo3:NM_172760:exon15:c.G1506A:p.L502L	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9974372	TGA	synonymous	NA	NA	NA	NA
SSC	chr8	105329467	12A2p6	cell line	sgMsh2	105329467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	95	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon22:c.T3524C:p.L1175P	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9996798	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	105697256	12A2p6	cell line	sgMsh2	105697256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	71	0	0	NA	exonic	Carmil2	nonsynonymous SNV	Carmil2:NM_001357333:exon36:c.A3740G:p.E1247G	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9983086	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	105709426	12A2p6	cell line	sgMsh2	105709426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	26	0	0	NA	exonic	4933405L10Rik	nonsynonymous SNV	"4933405L10Rik:NM_001357256:exon3:c.T329C:p.V110A,4933405L10Rik:NM_027655:exon3:c.T329C:p.V110A"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9629374	GTG	nonsynonymous	G	5	GGGGG	NA
SSC	chr8	105886228	12A2p6	cell line	sgMsh2	105886228	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	120	0	0	NA	exonic	Edc4	nonsynonymous SNV	"Edc4:NM_001301100:exon6:c.A782G:p.E261G,Edc4:NM_181594:exon6:c.A782G:p.E261G"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.214148201	3	0.9999987	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	55	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.994883	GGC	synonymous	NA	NA	NA	NA
SSC	chr8	106555377	12A2p6	cell line	sgMsh2	106555377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	75	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon16:c.A2396G:p.Y799C,Cdh3:NM_007665:exon16:c.A2393G:p.Y798C"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9987181	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	378	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
SSC	chr8	109935591	12A2p6	cell line	sgMsh2	109935591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	109	0	0	NA	exonic	Phlpp2	nonsynonymous SNV	Phlpp2:NM_001122594:exon17:c.T2609C:p.V870A	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9998788	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	110143090	12A2p6	cell line	sgMsh2	110143090	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.455	32	0	0	NA	exonic	Calb2	frameshift deletion	"Calb2:NM_001368294:exon10:c.720delC:p.V241delinsCKGVKGQGLLLRLP,Calb2:NM_001368293:exon11:c.807delC:p.V270delinsCKGVKGQGLLLRLP,Calb2:NM_007586:exon11:c.810delC:p.V271delinsCKGVKGQGLLLRLP"	8qD3	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC	chr8	110738693	12A2p6	cell line	sgMsh2	110738693	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.416	10	0	0	NA	exonic	Mtss2	frameshift deletion	"Mtss2:NM_001310591:exon14:c.1578delT:p.L527Wfs*26,Mtss2:NM_198625:exon14:c.1764delT:p.L589Wfs*26"	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	42	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9874799	TAC	synonymous	NA	NA	NA	NA
SSC	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	77	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	0.942252082	1	0.9950427	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	113777746	12A2p6	cell line	sgMsh2	113777746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	130	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon4:c.A712C:p.S238R	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999718	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	119773276	12A2p6	cell line	sgMsh2	119773276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	99	0	0	NA	exonic	Meak7	nonsynonymous SNV	Meak7:NM_028883:exon2:c.T143G:p.M48R	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9997574	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	120083356	12A2p6	cell line	sgMsh2	120083356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	66	0	0	NA	exonic	Zdhhc7	synonymous SNV	Zdhhc7:NM_133967:exon7:c.C624T:p.C208C	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9976086	TGC	synonymous	NA	NA	NA	NA
SSC	chr8	121782243	12A2p6	cell line	sgMsh2	121782243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	31	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon3:c.A1243G:p.T415A	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9735165	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	121888323	12A2p6	cell line	sgMsh2	121888323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	137	0	0	NA	exonic	Slc7a5	nonsynonymous SNV	Slc7a5:NM_011404:exon3:c.T784C:p.W262R	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999826	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	122269834	12A2p6	cell line	sgMsh2	122269834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	60	0	0	NA	exonic	Zfp469	nonsynonymous SNV	Zfp469:NM_001362883:exon3:c.C9768A:p.N3256K	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9963779	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	122305400	12A2p6	cell line	sgMsh2	122305400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	26	0	0	NA	exonic	Zfpm1	nonsynonymous SNV	Zfpm1:NM_009569:exon2:c.T83C:p.M28T	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9629374	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr8	122439459	12A2p6	cell line	sgMsh2	122439459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	42	0	0	NA	exonic	Mvd	synonymous SNV	Mvd:NM_138656:exon4:c.C324T:p.S108S	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9874799	AGC	synonymous	GCTGAG	13	GCTGAGGCTGAGG	NA
SSC	chr8	123066560	12A2p6	cell line	sgMsh2	123066560	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	215	0	0	NA	exonic	Spg7	nonsynonymous SNV	"Spg7:NM_001364435:exon2:c.C271A:p.L91M,Spg7:NM_153176:exon2:c.C271A:p.L91M"	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr8	123199101	12A2p6	cell line	sgMsh2	123199101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	82	0	0	NA	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon4:c.A294G:p.I98M	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.999211	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr8	123200246	12A2p6	cell line	sgMsh2	123200246	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	91	0	0	NA	exonic	Dpep1	frameshift deletion	Dpep1:NM_007876:exon8:c.808delA:p.N270Tfs*54	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr8	123373942	12A2p6	cell line	sgMsh2	123373942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	36	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001037877:exon1:c.T70C:p.L24L,Tcf25:NM_001037878:exon1:c.T70C:p.L24L,Tcf25:NM_001286362:exon1:c.T70C:p.L24L,Tcf25:NM_001286363:exon1:c.T70C:p.L24L,Tcf25:NM_001359075:exon1:c.T70C:p.L24L,Tcf25:NM_001359076:exon1:c.T70C:p.L24L,Tcf25:NM_025804:exon1:c.T70C:p.L24L"	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9811351	CTT	synonymous	NA	NA	NA	NA
SSC	chr8	123384396	12A2p6	cell line	sgMsh2	123384396	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	163	0	0	NA	exonic	Tcf25	nonsynonymous SNV	"Tcf25:NM_001286362:exon4:c.C521T:p.A174V,Tcf25:NM_001286363:exon4:c.C521T:p.A174V,Tcf25:NM_001359076:exon4:c.C521T:p.A174V,Tcf25:NM_001037877:exon5:c.C596T:p.A199V,Tcf25:NM_001037878:exon5:c.C596T:p.A199V,Tcf25:NM_001359075:exon5:c.C596T:p.A199V,Tcf25:NM_025804:exon5:c.C596T:p.A199V"	8qE1	chr8-57552158-129138455	3	2	1	0.96	4.11164545	NA	1	1	1	0.9999971	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	5322821	12A2p6	cell line	sgMsh2	5322821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	191	0	0	NA	exonic	Casp4	synonymous SNV	"Casp4:NM_001379318:exon3:c.T96A:p.A32A,Casp4:NM_001379320:exon3:c.T264A:p.A88A,Casp4:NM_001379323:exon3:c.T24A:p.S8S,Casp4:NM_007609:exon3:c.T264A:p.A88A"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	CTA	synonymous	NA	NA	NA	NA
SSC	chr9	5352758	12A2p6	cell line	sgMsh2	5352758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon6:c.T579G:p.D193E	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994796	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	7171000	12A2p6	cell line	sgMsh2	7171000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	73	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon5:c.T628C:p.Y210H,Dync2h1:NM_029851:exon5:c.T628C:p.Y210H"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9985275	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	7272810	12A2p6	cell line	sgMsh2	7272810	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	196	0	0	NA	exonic	Mmp13	nonsynonymous SNV	Mmp13:NM_008607:exon2:c.C169A:p.L57M	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.381183797	2	0.7579706	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	7791057	12A2p6	cell line	sgMsh2	7791057	T	C	SNV	Mutect2;Vardict	2	0.025	209	0	0	NA	exonic	Tmem123	nonsynonymous SNV	Tmem123:NM_133739:exon3:c.T358C:p.S120P	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.1070741	3	1	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	9046607	12A2p6	cell line	sgMsh2	9046607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	58	0	0	NA	exonic	Arhgap42	stopgain	"Arhgap42:NM_001372566:exon7:c.C628T:p.Q210X,Arhgap42:NM_027823:exon7:c.C628T:p.Q210X,Arhgap42:NM_001372563:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372564:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372565:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372567:exon8:c.C730T:p.Q244X"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9958408	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	9115750	12A2p6	cell line	sgMsh2	9115750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	0	0	NA	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372570:exon3:c.T228C:p.A76A,Arhgap42:NM_001372563:exon4:c.T324C:p.A108A,Arhgap42:NM_001372564:exon4:c.T324C:p.A108A,Arhgap42:NM_001372565:exon4:c.T324C:p.A108A,Arhgap42:NM_001372566:exon4:c.T324C:p.A108A,Arhgap42:NM_001372567:exon4:c.T324C:p.A108A,Arhgap42:NM_001372568:exon4:c.T324C:p.A108A,Arhgap42:NM_027823:exon4:c.T324C:p.A108A"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	TAG	synonymous	NA	NA	NA	NA
SSC	chr9	9180096	12A2p6	cell line	sgMsh2	9180096	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	103	0	0	NA	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372564:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372565:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372566:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372567:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372568:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372569:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_027823:exon2:c.181delT:p.S61Pfs*26"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chr9	9706075	12A2p6	cell line	sgMsh2	9706075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	172	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1732G:p.S578G,Cntn5:NM_001170787:exon19:c.A2347G:p.S783G"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9952502	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	9706084	12A2p6	cell line	sgMsh2	9706084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	164	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1723C:p.S575R,Cntn5:NM_001170787:exon19:c.A2338C:p.S780R"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9996639	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	14464244	12A2p6	cell line	sgMsh2	14464244	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	126	0	0	NA	exonic	Kdm4d	frameshift deletion	Kdm4d:NM_173433:exon2:c.317delA:p.K106Sfs*61	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chr9	15307798	12A2p6	cell line	sgMsh2	15307798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	170	0	0	NA	exonic	Taf1d	synonymous SNV	"Taf1d:NM_027261:exon2:c.A45G:p.R15R,Taf1d:NM_029248:exon2:c.A45G:p.R15R"	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.9313028	GAG	synonymous	NA	NA	NA	NA
SSC	chr9	15962782	12A2p6	cell line	sgMsh2	15962782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	65	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon18:c.T10550A:p.L3517Q	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	84	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.9949784	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	15996745	12A2p6	cell line	sgMsh2	15996745	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	177	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T7972G:p.W2658G	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.916554298	1	0.9998449	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	16030011	12A2p6	cell line	sgMsh2	16030011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.A3995G:p.D1332G	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9775577	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	16031155	12A2p6	cell line	sgMsh2	16031155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	114	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon5:c.T3932C:p.M1311T	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.8278005	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	16376776	12A2p6	cell line	sgMsh2	16376776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	250	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon2:c.A1462G:p.T488A	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	18410065	12A2p6	cell line	sgMsh2	18410065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	115	0	0	NA	exonic	Ubtfl1	synonymous SNV	"Ubtfl1:NM_001360216:exon2:c.T888C:p.P296P,Ubtfl1:NM_001033793:exon3:c.T888C:p.P296P"	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999201	CTG	synonymous	NA	NA	NA	NA
SSC	chr9	19249191	12A2p6	cell line	sgMsh2	19249191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	195	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T207C:p.T69T	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
SSC	chr9	19249203	12A2p6	cell line	sgMsh2	19249203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	196	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T195C:p.N65N	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999997	GAT	synonymous	NA	NA	NA	NA
SSC	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	151	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999934	TAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	19808619	12A2p6	cell line	sgMsh2	19808619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	464	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G300T:p.Q100H	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	1.01E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	19808925	12A2p6	cell line	sgMsh2	19808925	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	295	0	0	NA	exonic	Olfr859	synonymous SNV	Olfr859:NM_146526:exon1:c.A606G:p.L202L	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.175601524	3	1	TAA	synonymous	NA	NA	NA	NA
SSC	chr9	20260333	12A2p6	cell line	sgMsh2	20260333	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	270	0	0	NA	exonic	Olfr872	nonsynonymous SNV	Olfr872:NM_146560:exon2:c.G492T:p.L164F	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.997930614	1	3.05E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	20891529	12A2p6	cell line	sgMsh2	20891529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	61	0	0	NA	exonic	Ppan	nonsynonymous SNV	Ppan:NM_145610:exon10:c.A980G:p.N327S	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9966199	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	20927139	12A2p6	cell line	sgMsh2	20927139	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	133	0	0	NA	exonic	Dnmt1	frameshift deletion	"Dnmt1:NM_001199431:exon13:c.984delA:p.K328Nfs*22,Dnmt1:NM_001199432:exon13:c.627delA:p.K209Nfs*22,Dnmt1:NM_001199433:exon13:c.630delA:p.K210Nfs*22,Dnmt1:NM_001314011:exon13:c.1005delA:p.K335Nfs*22,Dnmt1:NM_010066:exon13:c.981delA:p.K327Nfs*22"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.740952774	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC	chr9	21025563	12A2p6	cell line	sgMsh2	21025563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	18	0	0	NA	exonic	Icam1	synonymous SNV	Icam1:NM_010493:exon3:c.G348A:p.E116E	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9151697	AGC	synonymous	NA	NA	NA	NA
SSC	chr9	21266748	12A2p6	cell line	sgMsh2	21266748	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	148	0	0	NA	exonic	Atg4d	nonsynonymous SNV	Atg4d:NM_153583:exon2:c.T245G:p.V82G	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999919	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21345940	12A2p6	cell line	sgMsh2	21345940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	129	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon14:c.A1174G:p.K392E,Slc44a2:NM_001359227:exon14:c.A1174G:p.K392E,Slc44a2:NM_152808:exon14:c.A1180G:p.K394E"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.676708314	2	0.9738051	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21397582	12A2p6	cell line	sgMsh2	21397582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	60	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon12:c.T1294C:p.F432L,Ilf3:NM_001042709:exon12:c.T1294C:p.F432L,Ilf3:NM_001042708:exon13:c.T1333C:p.F445L,Ilf3:NM_001277321:exon13:c.T1333C:p.F445L,Ilf3:NM_010561:exon13:c.T1333C:p.F445L,Ilf3:NM_001277322:exon14:c.T1333C:p.F445L"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9963779	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21589965	12A2p6	cell line	sgMsh2	21589965	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	67	0	0	NA	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon7:c.T706A:p.S236T,Yipf2:NM_138303:exon7:c.T706A:p.S236T,Yipf2:NM_001205157:exon8:c.T706A:p.S236T,Yipf2:NM_001205158:exon8:c.T706A:p.S236T,Yipf2:NM_001359299:exon8:c.T706A:p.S236T"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9968801	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21635537	12A2p6	cell line	sgMsh2	21635537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	0	0	NA	exonic	Smarca4	synonymous SNV	"Smarca4:NM_001174078:exon4:c.T357C:p.G119G,Smarca4:NM_001174079:exon4:c.T357C:p.G119G,Smarca4:NM_001357764:exon4:c.T357C:p.G119G,Smarca4:NM_011417:exon4:c.T357C:p.G119G"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.92940319	1	0.992445	GTT	synonymous	NA	NA	NA	NA
SSC	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	37	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.8987652	GCT	synonymous	NA	NA	NA	NA
SSC	chr9	21775738	12A2p6	cell line	sgMsh2	21775738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	31	0	0	NA	exonic	Kank2	nonsynonymous SNV	Kank2:NM_145611:exon7:c.A1787G:p.Y596C	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9735165	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21935589	12A2p6	cell line	sgMsh2	21935589	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	87	0	0	NA	exonic	Ccdc159	nonsynonymous SNV	"Ccdc159:NM_001164614:exon12:c.T1192A:p.W398R,Ccdc159:NM_025977:exon12:c.T1168A:p.W390R"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21959360	12A2p6	cell line	sgMsh2	21959360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon8:c.A1223C:p.D408A	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998607	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	21962265	12A2p6	cell line	sgMsh2	21962265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	24	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon2:c.T187C:p.F63L	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9576523	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	22108218	12A2p6	cell line	sgMsh2	22108218	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	57	0	0	NA	exonic	Cnn1	nonsynonymous SNV	Cnn1:NM_009922:exon7:c.A881G:p.Y294C	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.676708314	2	7.59E-07	TAC	nonsynonymous	ACT	8	ACTACTAC	NA
SSC	chr9	22127235	12A2p6	cell line	sgMsh2	22127235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	117	0	0	NA	exonic	Acp5	nonsynonymous SNV	"Acp5:NM_001102404:exon5:c.T769C:p.Y257H,Acp5:NM_001102405:exon5:c.T769C:p.Y257H,Acp5:NM_007388:exon5:c.T769C:p.Y257H"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999304	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	22236288	12A2p6	cell line	sgMsh2	22236288	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	95	0	0	NA	exonic	Zfp809	nonsynonymous SNV	"Zfp809:NM_001164624:exon3:c.C217A:p.L73I,Zfp809:NM_172763:exon3:c.C217A:p.L73I"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.783782414	1	0.7577148	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	22364010	12A2p6	cell line	sgMsh2	22364010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	181	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon9:c.T1598G:p.L533R	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.775216486	1	0.5831763	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	24625670	12A2p6	cell line	sgMsh2	24625670	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.186	100	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.A455G:p.N152S	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.796631306	1	0.825739	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	26780766	12A2p6	cell line	sgMsh2	26780766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	106	0	0	NA	exonic	Glb1l2	nonsynonymous SNV	"Glb1l2:NM_001310768:exon6:c.T559C:p.Y187H,Glb1l2:NM_153803:exon7:c.T607C:p.Y203H"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	194	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.97223283	1	0.999998	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
SSC	chr9	27322853	12A2p6	cell line	sgMsh2	27322853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	85	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384263:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384264:exon10:c.T1261C:p.Y421H"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.946535046	1	0.9970536	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	35	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9798067	TCC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	30902118	12A2p6	cell line	sgMsh2	30902118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	87	0	0	NA	exonic	Adamts15	nonsynonymous SNV	"Adamts15:NM_001024139:exon8:c.C2750T:p.P917L,Adamts15:NM_001329420:exon8:c.C1757T:p.P586L"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.539653465	2	0.9974524	CGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	31325659	12A2p6	cell line	sgMsh2	31325659	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	124	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368845:exon4:c.C327T:p.S109S,Prdm10:NM_001368846:exon4:c.C327T:p.S109S,Prdm10:NM_199315:exon5:c.C327T:p.S109S"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.69384017	2	0.9373189	CCG	synonymous	NA	NA	NA	NA
SSC	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	118	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999351	CGC	synonymous	NA	NA	NA	NA
SSC	chr9	32317590	12A2p6	cell line	sgMsh2	32317590	C	-	Deletion	Strelka2;Vardict	2	0.1034	58	0	0	NA	exonic	Kcnj5	frameshift deletion	Kcnj5:NM_010605:exon4:c.1250delG:p.G417Afs*63	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.442858479	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC	chr9	35270018	12A2p6	cell line	sgMsh2	35270018	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	86	0	0	NA	exonic	Rpusd4	nonsynonymous SNV	Rpusd4:NM_028040:exon3:c.A409C:p.M137L	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994021	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	35562004	12A2p6	cell line	sgMsh2	35562004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	183	0	0	NA	exonic	Hyls1	nonsynonymous SNV	Hyls1:NM_029762:exon4:c.A115G:p.T39A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.860875766	1	0.9962929	GTA	nonsynonymous	AGC	9	AGCAGCAGC	NA
SSC	chr9	36743507	12A2p6	cell line	sgMsh2	36743507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	70	0	0	NA	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon13:c.T1463A:p.I488N	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9981873	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	37423188	12A2p6	cell line	sgMsh2	37423188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon12:c.A1945G:p.T649A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7763834	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	121	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	TAT	synonymous	NA	NA	NA	NA
SSC	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	278	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.98E-09	GTA	synonymous	NA	NA	NA	NA
SSC	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	227	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.97223283	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr9	38026663	12A2p6	cell line	sgMsh2	38026663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	290	0	0	NA	exonic	Olfr883	nonsynonymous SNV	Olfr883:NM_146419:exon1:c.T856C:p.F286L	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.856592802	1	0.9994985	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38047923	12A2p6	cell line	sgMsh2	38047923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	412	0	0	NA	exonic	Olfr884	nonsynonymous SNV	Olfr884:NM_001011798:exon1:c.T700G:p.S234A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	297	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.26E-09	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38349215	12A2p6	cell line	sgMsh2	38349215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	356	0	0	NA	exonic	Olfr898	nonsynonymous SNV	Olfr898:NM_146871:exon1:c.C131A:p.T44N	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	1.04E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38368241	12A2p6	cell line	sgMsh2	38368241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.C694T:p.L232F,Olfr250:NM_207552:exon1:c.C694T:p.L232F"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9999954	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38378257	12A2p6	cell line	sgMsh2	38378257	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.266	235	0	0	NA	exonic	Olfr251;Olfr900	synonymous SNV	"Olfr900:NM_146874:exon1:c.C375A:p.A125A,Olfr251:NM_207553:exon1:c.C375A:p.A125A"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	2.03E-08	CCT	synonymous	NA	NA	NA	NA
SSC	chr9	38430355	12A2p6	cell line	sgMsh2	38430355	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	339	0	0	NA	exonic	Olfr901	synonymous SNV	Olfr901:NM_001011806:exon1:c.C72A:p.L24L	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	TCC	synonymous	NA	NA	NA	NA
SSC	chr9	38473324	12A2p6	cell line	sgMsh2	38473324	C	A	SNV	Mutect2;Vardict	2	0.037	333	0	0	NA	exonic	Olfr905	synonymous SNV	Olfr905:NM_146804:exon1:c.C576A:p.T192T	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.158469668	3	1	CCT	synonymous	NA	NA	NA	NA
SSC	chr9	38488319	12A2p6	cell line	sgMsh2	38488319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	178	0	0	NA	exonic	Olfr906	nonsynonymous SNV	Olfr906:NM_146803:exon1:c.T289C:p.C97R	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9998848	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38498985	12A2p6	cell line	sgMsh2	38498985	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.274	264	0	0	NA	exonic	Olfr907	frameshift insertion	Olfr907:NM_146805:exon1:c.316dupT:p.A108Cfs*2	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CCT	frameshift	T	5	TTTTT	1
SSC	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	259	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9999999	TTT	synonymous	NA	NA	NA	NA
SSC	chr9	38539328	12A2p6	cell line	sgMsh2	38539328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	316	0	0	NA	exonic	Olfr910	synonymous SNV	Olfr910:NM_146811:exon2:c.T432C:p.L144L	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.07E-09	TTA	synonymous	NA	NA	NA	NA
SSC	chr9	38657580	12A2p6	cell line	sgMsh2	38657580	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	132	0	0	NA	exonic	Olfr916	stopgain	Olfr916:NM_146784:exon1:c.G811T:p.G271X	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999754	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38657680	12A2p6	cell line	sgMsh2	38657680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	183	0	0	NA	exonic	Olfr916	synonymous SNV	Olfr916:NM_146784:exon1:c.T711G:p.A237A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999993	AAG	synonymous	NA	NA	NA	NA
SSC	chr9	38657693	12A2p6	cell line	sgMsh2	38657693	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	191	0	0	NA	exonic	Olfr916	nonsynonymous SNV	Olfr916:NM_146784:exon1:c.G698A:p.G233D	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999996	GCC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38775472	12A2p6	cell line	sgMsh2	38775472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	130	0	0	NA	exonic	Olfr921	synonymous SNV	Olfr921:NM_146782:exon3:c.T216C:p.C72C	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.719537954	2	0.8560634	GTT	synonymous	NA	NA	NA	NA
SSC	chr9	38848258	12A2p6	cell line	sgMsh2	38848258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	241	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.T143C:p.I48T	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.37E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	266	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.878007622	1	0.9998771	CCT	synonymous	NA	NA	NA	NA
SSC	chr9	39184623	12A2p6	cell line	sgMsh2	39184623	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	353	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.T444G:p.I148M	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	333	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	1.02E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	39484525	12A2p6	cell line	sgMsh2	39484525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	299	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A727G:p.T243A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.23E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	39623642	12A2p6	cell line	sgMsh2	39623642	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	237	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.A518C:p.E173A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	0.9999999	GAG	nonsynonymous	GTGAG	10	GTGAGGTGAG	NA
SSC	chr9	39719449	12A2p6	cell line	sgMsh2	39719449	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	459	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.C221A:p.S74Y	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	39819815	12A2p6	cell line	sgMsh2	39819815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	336	0	0	NA	exonic	Olfr970	nonsynonymous SNV	Olfr970:NM_146611:exon1:c.A175G:p.M59V	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.976515794	1	1.25E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	39910269	12A2p6	cell line	sgMsh2	39910269	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	282	0	0	NA	exonic	Olfr229	synonymous SNV	Olfr229:NM_146613:exon1:c.A465C:p.G155G	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	1.74E-09	GAT	synonymous	NA	NA	NA	NA
SSC	chr9	42377887	12A2p6	cell line	sgMsh2	42377887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	66	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon8:c.T1381C:p.C461R,Tecta:NM_009347:exon8:c.T1381C:p.C461R,Tecta:NM_001378602:exon9:c.T1381C:p.C461R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9976086	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	42415852	12A2p6	cell line	sgMsh2	42415852	A	-	Deletion	Mutect2;Strelka2	2	0.209	87	0	0	NA	exonic	Tbcel	frameshift deletion	"Tbcel:NM_001378604:exon7:c.879delT:p.F293Lfs*31,Tbcel:NM_001357656:exon8:c.1254delT:p.F418Lfs*31,Tbcel:NM_001357657:exon8:c.1254delT:p.F418Lfs*31,Tbcel:NM_173038:exon8:c.1254delT:p.F418Lfs*31"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.895139478	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	155	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999995	CAG	synonymous	NA	NA	NA	NA
SSC	chr9	44333095	12A2p6	cell line	sgMsh2	44333095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	exonic	Dpagt1	nonsynonymous SNV	"Dpagt1:NM_001364464:exon8:c.A879C:p.Q293H,Dpagt1:NM_007875:exon9:c.A1206C:p.Q402H"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999868	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	214	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
SSC	chr9	44506456	12A2p6	cell line	sgMsh2	44506456	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	54	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.T1590A:p.D530E,Bcl9l:NM_030256:exon7:c.T1701A:p.D567E"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.933686154	1	0.9819555	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	27	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9653363	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	44823374	12A2p6	cell line	sgMsh2	44823374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	119	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6170G:p.Y2057C	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999394	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	44848628	12A2p6	cell line	sgMsh2	44848628	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	91	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.T1923G:p.I641M	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	GAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	45002239	12A2p6	cell line	sgMsh2	45002239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon5:c.A197T:p.H66L	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9849651	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998788	TGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	45672814	12A2p6	cell line	sgMsh2	45672814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	56	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon7:c.A1402G:p.S468G	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9952245	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	46196067	12A2p6	cell line	sgMsh2	46196067	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	56	0	0	NA	exonic	Sik3	nonsynonymous SNV	Sik3:NM_027498:exon11:c.G1401T:p.R467S	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9952245	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	40	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.963666902	1	0.976806	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	46291342	12A2p6	cell line	sgMsh2	46291342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	166	0	0	NA	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon6:c.T1346C:p.L449S	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9999418	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	48394182	12A2p6	cell line	sgMsh2	48394182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	152	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A871G:p.S291G	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.9664371	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	48394198	12A2p6	cell line	sgMsh2	48394198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	137	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A887T:p.N296I	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.809480198	1	0.8989484	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	50541135	12A2p6	cell line	sgMsh2	50541135	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.146	62	0	0	NA	exonic	Bco2	frameshift deletion	"Bco2:NM_001359610:exon6:c.632delA:p.K211Rfs*22,Bco2:NM_133217:exon6:c.632delA:p.K211Rfs*22"	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.625312745	NA	NA	CTT	frameshift	TCTT	9	TCTTTCTTT	-1
SSC	chr9	50638059	12A2p6	cell line	sgMsh2	50638059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	102	0	0	NA	exonic	Dlat	synonymous SNV	Dlat:NM_145614:exon12:c.T1524C:p.V508V	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	CAA	synonymous	NA	NA	NA	NA
SSC	chr9	50695511	12A2p6	cell line	sgMsh2	50695511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	130	0	0	NA	exonic	Dixdc1	nonsynonymous SNV	"Dixdc1:NM_001311069:exon6:c.T804G:p.D268E,Dixdc1:NM_001374656:exon6:c.T729G:p.D243E,Dixdc1:NM_178118:exon6:c.T807G:p.D269E"	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999718	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	50895761	12A2p6	cell line	sgMsh2	50895761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	43	0	0	NA	exonic	Sik2	nonsynonymous SNV	Sik2:NM_178710:exon15:c.A2348G:p.E783G	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9815465	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	51101073	12A2p6	cell line	sgMsh2	51101073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	79	0	0	NA	exonic	Hoatz	synonymous SNV	Hoatz:NM_177702:exon2:c.C246A:p.P82P	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.766650558	1	0.6765207	AGG	synonymous	AAAGGG	12	AAAGGGAAAGGG	NA
SSC	chr9	54451628	12A2p6	cell line	sgMsh2	54451629	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	91	0	0	NA	exonic	Dmxl2	frameshift deletion	Dmxl2:NM_172771:exon10:c.1318_1319del:p.R440Gfs*8	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	CCT	frameshift	CT	11	CTCTCTCTCTC	-2
SSC	chr9	54628565	12A2p6	cell line	sgMsh2	54628565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	120	0	0	NA	exonic	Acsbg1	synonymous SNV	Acsbg1:NM_053178:exon3:c.T285C:p.C95C	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999435	TAC	synonymous	NA	NA	NA	NA
SSC	chr9	54865393	12A2p6	cell line	sgMsh2	54865393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	201	0	0	NA	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon2:c.T106C:p.Y36H	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	55035286	12A2p6	cell line	sgMsh2	55035286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	127	0	0	NA	exonic	Chrnb4	nonsynonymous SNV	Chrnb4:NM_148944:exon5:c.A703G:p.T235A	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999652	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	55859035	12A2p6	cell line	sgMsh2	55859035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	134	0	0	NA	exonic	Scaper	nonsynonymous SNV	"Scaper:NM_001081341:exon13:c.T1456C:p.S486P,Scaper:NM_001357652:exon13:c.T1438C:p.S480P"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.826612054	1	0.9498543	GAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	56042647	12A2p6	cell line	sgMsh2	56042647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	136	0	0	NA	exonic	Rcn2	nonsynonymous SNV	"Rcn2:NM_001278274:exon2:c.A226G:p.I76V,Rcn2:NM_011992:exon2:c.A226G:p.I76V"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999814	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.018	1044	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.077093352	3	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	121	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999473	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
SSC	chr9	56926737	12A2p6	cell line	sgMsh2	56926737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	48	0	0	NA	exonic	Snx33	nonsynonymous SNV	Snx33:NM_175483:exon1:c.A47G:p.K16R	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.710972026	1	0.5299353	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	58086545	12A2p6	cell line	sgMsh2	58086545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	75	0	0	NA	exonic	Ccdc33	nonsynonymous SNV	"Ccdc33:NM_001311085:exon3:c.A317G:p.E106G,Ccdc33:NM_029212:exon3:c.A317G:p.E106G,Ccdc33:NM_001166282:exon5:c.A1052G:p.E351G"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.985081722	1	0.9981337	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	58362912	12A2p6	cell line	sgMsh2	58362912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	93	0	0	NA	exonic	Tbc1d21	nonsynonymous SNV	"Tbc1d21:NM_001357455:exon6:c.A482G:p.Y161C,Tbc1d21:NM_028854:exon6:c.A482G:p.Y161C"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9956453	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	75	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.963666902	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	105	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.99984	GGA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	60056985	12A2p6	cell line	sgMsh2	60056985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	90	0	0	NA	exonic	Thsd4	nonsynonymous SNV	"Thsd4:NM_172444:exon2:c.A143G:p.N48S,Thsd4:NM_001040426:exon8:c.A1223G:p.N408S"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	64924524	12A2p6	cell line	sgMsh2	64924524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	122	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon10:c.T3290C:p.M1097T	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.980798758	1	0.9998919	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	65215569	12A2p6	cell line	sgMsh2	65215569	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	0	0	NA	exonic	Parp16	nonsynonymous SNV	Parp16:NM_177460:exon2:c.C111G:p.D37E	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9735165	ACT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	65398606	12A2p6	cell line	sgMsh2	65398606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	56	0	0	NA	exonic	Rasl12	synonymous SNV	"Rasl12:NM_001033158:exon1:c.G42A:p.P14P,Rasl12:NM_001162923:exon1:c.G42A:p.P14P"	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9952245	CGC	synonymous	NA	NA	NA	NA
SSC	chr9	65502263	12A2p6	cell line	sgMsh2	65502263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon14:c.G1390A:p.G464S	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.73666981	1	0.5379193	CCA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	65509652	12A2p6	cell line	sgMsh2	65509652	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	81	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon6:c.G534T:p.K178N	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.835177982	1	0.9299506	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	67919278	12A2p6	cell line	sgMsh2	67919278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	172	0	0	NA	exonic	Vps13c	synonymous SNV	Vps13c:NM_177184:exon38:c.T4200C:p.D1400D	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999985	ATG	synonymous	NA	NA	NA	NA
SSC	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	66	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	67964084	12A2p6	cell line	sgMsh2	67964084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	224	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon70:c.T9635C:p.M3212T	9qC	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	4.24E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	87	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9994422	GCT	synonymous	NA	NA	NA	NA
SSC	chr9	70341998	12A2p6	cell line	sgMsh2	70341998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	54	0	0	NA	exonic	Myo1e	nonsynonymous SNV	Myo1e:NM_181072:exon14:c.T1379C:p.M460T	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9945173	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	70581343	12A2p6	cell line	sgMsh2	70581343	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	113	0	0	NA	exonic	Sltm	frameshift deletion	"Sltm:NM_001357911:exon14:c.1546delA:p.R518Efs*15,Sltm:NM_025690:exon14:c.1774delA:p.R594Efs*15,Sltm:NM_026337:exon14:c.1720delA:p.R576Efs*15"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC	chr9	70607522	12A2p6	cell line	sgMsh2	70607522	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	63	0	0	NA	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon8:c.A1613G:p.Y538C,Mindy2:NM_172772:exon8:c.A1613G:p.Y538C"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	72331408	12A2p6	cell line	sgMsh2	72331408	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	174	0	0	NA	exonic	Zfp280d	frameshift deletion	"Zfp280d:NM_001311105:exon16:c.2005delA:p.A670Pfs*1,Zfp280d:NM_146224:exon16:c.2005delA:p.A670Pfs*2"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC	chr9	72593356	12A2p6	cell line	sgMsh2	72593356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	108	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon4:c.T397C:p.Y133H	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998701	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	72617068	12A2p6	cell line	sgMsh2	72617068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	136	0	0	NA	exonic	Rfx7	synonymous SNV	Rfx7:NM_001033536:exon9:c.T1539C:p.N513N	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.852309838	1	0.9843053	ATG	synonymous	NA	NA	NA	NA
SSC	chr9	73931935	12A2p6	cell line	sgMsh2	73931935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	154	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.T1633C:p.F545L	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999947	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	74218759	12A2p6	cell line	sgMsh2	74218759	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	91	0	0	NA	exonic	Wdr72	synonymous SNV	Wdr72:NM_001033500:exon18:c.T3171G:p.S1057S	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995774	CTT	synonymous	NA	NA	NA	NA
SSC	chr9	75008893	12A2p6	cell line	sgMsh2	75008893	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	139	0	0	NA	exonic	Fam214a	nonsynonymous SNV	"Fam214a:NM_153584:exon5:c.A794G:p.Y265C,Fam214a:NM_001113283:exon6:c.A773G:p.Y258C,Fam214a:NM_001359816:exon6:c.A773G:p.Y258C"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.261260805	3	0.9999849	TAC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	75337355	12A2p6	cell line	sgMsh2	75337355	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	116	0	0	NA	exonic	Gnb5	nonsynonymous SNV	"Gnb5:NM_138719:exon7:c.A730G:p.S244G,Gnb5:NM_010313:exon9:c.A856G:p.S286G"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999254	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	78064712	12A2p6	cell line	sgMsh2	78064712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	163	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon6:c.T934G:p.Y312D	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999971	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	154	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.890856514	1	0.9984836	TTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	78688762	12A2p6	cell line	sgMsh2	78688762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	104	0	0	NA	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.T2376G:p.F792L	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998285	TTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	79697478	12A2p6	cell line	sgMsh2	79697478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	55	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon11:c.T2087C:p.L696P	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.994883	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	79776225	12A2p6	cell line	sgMsh2	79776225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	83	0	0	NA	exonic	Tmem30a	nonsynonymous SNV	Tmem30a:NM_133718:exon4:c.T469C:p.C157R	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.82232909	1	0.09488869	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	80140847	12A2p6	cell line	sgMsh2	80140847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	161	0	0	NA	exonic	Senp6	synonymous SNV	"Senp6:NM_146003:exon20:c.T2907C:p.A969A,Senp6:NM_001311110:exon21:c.T2928C:p.A976A"	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.955100974	1	0.9999627	CTG	synonymous	NA	NA	NA	NA
SSC	chr9	82876810	12A2p6	cell line	sgMsh2	82876810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	58	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon37:c.T4286C:p.L1429P	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9958408	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	142	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999877	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	85697205	12A2p6	cell line	sgMsh2	85697206	TT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	54	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1955_1956del:p.K652Tfs*16,Ibtk:NM_001081282:exon26:c.3635_3636del:p.K1212Tfs*16"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-2
SSC	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	87	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9994422	TAG	synonymous	NA	NA	NA	NA
SSC	chr9	86570353	12A2p6	cell line	sgMsh2	86570353	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	71	0	0	NA	exonic	Pgm3	nonsynonymous SNV	"Pgm3:NM_001163746:exon2:c.G53T:p.G18V,Pgm3:NM_028352:exon2:c.G53T:p.G18V"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.869441694	1	0.9631714	CCC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	88367345	12A2p6	cell line	sgMsh2	88367345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	0	0	NA	exonic	Nt5e	nonsynonymous SNV	Nt5e:NM_011851:exon7:c.A1331G:p.Y444C	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.912271334	1	0.9955205	TAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	88401974	12A2p6	cell line	sgMsh2	88401974	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	128	0	0	NA	exonic	Snx14	nonsynonymous SNV	"Snx14:NM_001359958:exon15:c.T1394G:p.F465C,Snx14:NM_172926:exon15:c.T1394G:p.F465C"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999676	AAA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	89994768	12A2p6	cell line	sgMsh2	89994768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	63	0	0	NA	exonic	Rasgrf1	nonsynonymous SNV	"Rasgrf1:NM_001357743:exon15:c.C2179T:p.P727S,Rasgrf1:NM_011245:exon15:c.C2185T:p.P729S"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.899422442	1	0.9757532	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	90228938	12A2p6	cell line	sgMsh2	90228938	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	59	0	0	NA	exonic	Tbc1d2b	stopgain	Tbc1d2b:NM_194334:exon4:c.G847T:p.G283X	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.698123134	2	0.6083718	CCT	nonsynonymous	AC	10	ACACACACAC	NA
SSC	chr9	90270491	12A2p6	cell line	sgMsh2	90270491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	27	0	0	NA	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon1:c.A221G:p.Q74R	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9653363	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	95511823	12A2p6	cell line	sgMsh2	95511823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	219	0	0	NA	exonic	U2surp	synonymous SNV	"U2surp:NM_001114977:exon1:c.T39C:p.S13S,U2surp:NM_001357974:exon1:c.T39C:p.S13S,U2surp:NM_001357975:exon1:c.T39C:p.S13S,U2surp:NM_026476:exon1:c.T39C:p.S13S"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
SSC	chr9	95765786	12A2p6	cell line	sgMsh2	95765786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	exonic	Pls1	nonsynonymous SNV	Pls1:NM_001033210:exon12:c.G1279A:p.V427M	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996057	ACC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	95970797	12A2p6	cell line	sgMsh2	95970797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.226	159	0	0	NA	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon6:c.A696G:p.G232G,Xrn1:NM_011916:exon6:c.A696G:p.G232G"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9999791	GAA	synonymous	A	8	AAAAAAAA	NA
SSC	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	113	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999082	GAA	nonsynonymous	T	5	TTTTT	NA
SSC	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.1778	135	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.761511001	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
SSC	chr9	96340286	12A2p6	cell line	sgMsh2	96340286	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	83	0	0	NA	exonic	Atp1b3	synonymous SNV	"Atp1b3:NM_001357212:exon3:c.C339A:p.S113S,Atp1b3:NM_007502:exon4:c.C447A:p.S149S,Atp1b3:NM_001357213:exon5:c.C276A:p.S92S"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9992638	AGG	synonymous	CAAG	8	CAAGCAAG	NA
SSC	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	69	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr9	101211534	12A2p6	cell line	sgMsh2	101211534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	152	0	0	NA	exonic	Ppp2r3a	nonsynonymous SNV	Ppp2r3a:NM_001161362:exon2:c.T1589C:p.L530P	9qE4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9999939	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	101984182	12A2p6	cell line	sgMsh2	101984182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	95	0	0	NA	exonic	Ephb1	synonymous SNV	Ephb1:NM_173447:exon10:c.C1782T:p.Y594Y	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.925120226	1	0.9965105	TGT	synonymous	NA	NA	NA	NA
SSC	chr9	103277478	12A2p6	cell line	sgMsh2	103277478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	62	0	0	NA	exonic	1300017J02Rik	nonsynonymous SNV	1300017J02Rik:NM_027918:exon5:c.T613G:p.F205V	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9968458	AAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	103318038	12A2p6	cell line	sgMsh2	103318038	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	101	0	0	NA	exonic	Topbp1	nonsynonymous SNV	Topbp1:NM_176979:exon8:c.T971C:p.V324A	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.256977841	3	0.9996702	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	103489246	12A2p6	cell line	sgMsh2	103489246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	101	0	0	NA	exonic	Tmem108	synonymous SNV	"Tmem108:NM_001359465:exon4:c.C1545T:p.Y515Y,Tmem108:NM_178638:exon5:c.C1545T:p.Y515Y"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9997888	AGT	synonymous	NA	NA	NA	NA
SSC	chr9	104011626	12A2p6	cell line	sgMsh2	104011626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	106	0	0	NA	exonic	Nphp3	nonsynonymous SNV	"Nphp3:NM_028721:exon6:c.T971C:p.M324T,Nphp3:NM_172460:exon6:c.T971C:p.M324T"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998507	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	104031988	12A2p6	cell line	sgMsh2	104031988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	56	0	0	NA	exonic	Nphp3	nonsynonymous SNV	Nphp3:NM_028721:exon17:c.T2396G:p.V799G	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.77949945	1	0.7663711	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	104060299	12A2p6	cell line	sgMsh2	104060299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	308	0	0	NA	exonic	Uba5	synonymous SNV	Uba5:NM_025692:exon3:c.T210C:p.R70R	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.920837262	1	0.9999996	TAC	synonymous	NA	NA	NA	NA
SSC	chr9	104076339	12A2p6	cell line	sgMsh2	104076339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	111	0	0	NA	exonic	Acad11	nonsynonymous SNV	Acad11:NM_175324:exon4:c.T379C:p.F127L	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998945	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	104176762	12A2p6	cell line	sgMsh2	104176762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	134	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon42:c.A4894G:p.M1632V,Dnajc13:NM_001359740:exon43:c.A4909G:p.M1637V"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.830895018	1	0.9582869	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	105026705	12A2p6	cell line	sgMsh2	105026705	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	85	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon15:c.A1359T:p.Q453H,Cpne4:NM_001378996:exon15:c.A1329T:p.Q443H,Cpne4:NM_028719:exon15:c.A1305T:p.Q435H"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.942252082	1	0.9966713	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	105130464	12A2p6	cell line	sgMsh2	105130464	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	54	0	0	NA	exonic	Nudt16	frameshift deletion	Nudt16:NM_029385:exon3:c.455delA:p.E152Gfs*20	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CTC	frameshift	NA	NA	NA	-1
SSC	chr9	105774746	12A2p6	cell line	sgMsh2	105774746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	150	0	0	NA	exonic	Col6a6	frameshift deletion	"Col6a6:NM_001102607:exon8:c.3065delT:p.L1022Wfs*14,Col6a6:NM_172927:exon8:c.3065delT:p.L1022Wfs*16"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC	chr9	105782429	12A2p6	cell line	sgMsh2	105782429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	69	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon5:c.T1316C:p.L439P,Col6a6:NM_172927:exon5:c.T1316C:p.L439P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	105783774	12A2p6	cell line	sgMsh2	105783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	90	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon4:c.T1135C:p.S379P,Col6a6:NM_172927:exon4:c.T1135C:p.S379P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999547	GAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	154	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999947	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	106019449	12A2p6	cell line	sgMsh2	106019449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	85	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon29:c.T5166C:p.P1722P	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9993592	CAG	synonymous	NA	NA	NA	NA
SSC	chr9	106062941	12A2p6	cell line	sgMsh2	106062941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	66	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon9:c.T3789C:p.V1263V	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GAA	synonymous	NA	NA	NA	NA
SSC	chr9	106198718	12A2p6	cell line	sgMsh2	106198718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	69	0	0	NA	exonic	Ppm1m	nonsynonymous SNV	Ppm1m:NM_198931:exon1:c.C10A:p.P4T	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9980572	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	106226140	12A2p6	cell line	sgMsh2	106226140	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	89	0	0	NA	exonic	Tlr9	nonsynonymous SNV	Tlr9:NM_031178:exon2:c.G2629A:p.D877N	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9995145	CGA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	51	0	0	NA	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9932568	TAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	106473724	12A2p6	cell line	sgMsh2	106473724	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	0	0	NA	exonic	Parp3	nonsynonymous SNV	"Parp3:NM_001311150:exon7:c.G968T:p.R323M,Parp3:NM_145619:exon7:c.G953T:p.R318M"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9970567	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	107258437	12A2p6	cell line	sgMsh2	107258437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	76	0	0	NA	exonic	Mapkapk3	nonsynonymous SNV	Mapkapk3:NM_178907:exon8:c.C728A:p.P243H	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9988039	GGG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	107331516	12A2p6	cell line	sgMsh2	107331516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	80	0	0	NA	exonic	Hemk1	nonsynonymous SNV	Hemk1:NM_133984:exon5:c.G481A:p.G161S	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9990936	CCA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	107572247	12A2p6	cell line	sgMsh2	107572247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	48	0	0	NA	exonic	Hyal2	nonsynonymous SNV	Hyal2:NM_010489:exon4:c.A1201G:p.T401A	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	2	1	1	0.9917088	TAC	nonsynonymous	C	5	CCCCC	NA
SSC	chr9	107602013	12A2p6	cell line	sgMsh2	107602013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	95	0	0	NA	exonic	Sema3b	nonsynonymous SNV	"Sema3b:NM_009153:exon8:c.G757A:p.A253T,Sema3b:NM_001291539:exon9:c.G757A:p.A253T,Sema3b:NM_001042779:exon10:c.G757A:p.A253T,Sema3b:NM_001291537:exon10:c.G757A:p.A253T,Sema3b:NM_001291538:exon10:c.G757A:p.A253T"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9996798	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	107705485	12A2p6	cell line	sgMsh2	107705485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	66	0	0	NA	exonic	Sema3f	nonsynonymous SNV	"Sema3f:NM_001311151:exon1:c.A58C:p.T20P,Sema3f:NM_001379496:exon2:c.A58C:p.T20P,Sema3f:NM_011349:exon2:c.A58C:p.T20P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9976086	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	118	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.88657355	1	0.9941908	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	108139239	12A2p6	cell line	sgMsh2	108139239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	134	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon2:c.A572G:p.H191R	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999786	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	108463937	12A2p6	cell line	sgMsh2	108463937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	72	0	0	NA	exonic	Ccdc71	synonymous SNV	"Ccdc71:NM_001378930:exon2:c.A948G:p.K316K,Ccdc71:NM_001378931:exon2:c.A948G:p.K316K,Ccdc71:NM_133744:exon2:c.A948G:p.K316K"	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9984218	AAG	synonymous	NA	NA	NA	NA
SSC	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	85	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.84374391	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC	chr9	108961780	12A2p6	cell line	sgMsh2	108961780	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	132	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon25:c.C3143T:p.A1048V	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.483974933	2	0.999982	GCG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	89	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9995145	GTG	synonymous	NA	NA	NA	NA
SSC	chr9	109623537	12A2p6	cell line	sgMsh2	109623537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	287	0	0	NA	exonic	Fbxw24	nonsynonymous SNV	Fbxw24:NM_001013776:exon4:c.T389C:p.I130T	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.813763162	1	0.9677381	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	144	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999893	GCT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	110547379	12A2p6	cell line	sgMsh2	110547379	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	111	0	0	NA	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T261A:p.N87K	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9998945	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chr9	110551221	12A2p6	cell line	sgMsh2	110551221	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	149	0	0	NA	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon3:c.4103delA:p.N1370Mfs*2	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.67242535	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC	chr9	110622110	12A2p6	cell line	sgMsh2	110622110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	160	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A189G:p.T63T	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.967949866	1	0.9999803	CTG	synonymous	NA	NA	NA	NA
SSC	chr9	112182812	12A2p6	cell line	sgMsh2	112182812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	82	0	0	NA	exonic	Arpp21	stoploss	"Arpp21:NM_001177615:exon5:c.A267G:p.X89W,Arpp21:NM_001362008:exon5:c.A267G:p.X89W,Arpp21:NM_001362009:exon5:c.A267G:p.X89W,Arpp21:NM_001362000:exon6:c.A267G:p.X89W,Arpp21:NM_001362001:exon6:c.A267G:p.X89W,Arpp21:NM_001362002:exon6:c.A267G:p.X89W,Arpp21:NM_001362005:exon6:c.A267G:p.X89W,Arpp21:NM_001362006:exon6:c.A267G:p.X89W,Arpp21:NM_001362007:exon6:c.A267G:p.X89W,Arpp21:NM_028755:exon6:c.A267G:p.X89W,Arpp21:NM_001177620:exon7:c.A267G:p.X89W,Arpp21:NM_001362003:exon7:c.A267G:p.X89W,Arpp21:NM_001362004:exon7:c.A267G:p.X89W"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999211	CTC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	118530314	12A2p6	cell line	sgMsh2	118530314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	168	0	0	NA	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon5:c.A581G:p.K194R	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.84374391	1	0.9864364	AAG	nonsynonymous	A	5	AAAAA	NA
SSC	chr9	118557612	12A2p6	cell line	sgMsh2	118557612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	140	0	0	NA	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon15:c.A3801G:p.Q1267Q	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9999859	AAT	synonymous	NA	NA	NA	NA
SSC	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9984218	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	119664827	12A2p6	cell line	sgMsh2	119664827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	83	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1412G:p.D471G,Scn10a:NM_009134:exon11:c.A1412G:p.D471G"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9992638	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chr9	119664849	12A2p6	cell line	sgMsh2	119664849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	102	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1390G:p.R464G,Scn10a:NM_009134:exon11:c.A1390G:p.R464G"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.999803	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	68	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9979179	CCC	synonymous	NA	NA	NA	NA
SSC	chr9	119958066	12A2p6	cell line	sgMsh2	119958066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	160	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon16:c.A2138G:p.E713G	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.882290586	1	0.9980252	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chr9	119972717	12A2p6	cell line	sgMsh2	119972717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	65	0	0	NA	exonic	Csrnp1	synonymous SNV	"Csrnp1:NM_001357560:exon5:c.T1275C:p.G425G,Csrnp1:NM_001357561:exon5:c.T1275C:p.G425G,Csrnp1:NM_001357562:exon5:c.T1275C:p.G425G,Csrnp1:NM_153287:exon5:c.T1275C:p.G425G"	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9974372	TAC	synonymous	NA	NA	NA	NA
SSC	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	109	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	0.90798837	1	0.9964803	GAT	synonymous	NA	NA	NA	NA
SSC	chr9	123640590	12A2p6	cell line	sgMsh2	123640590	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	0	0	NA	exonic	Slc6a20a	nonsynonymous SNV	Slc6a20a:NM_139142:exon9:c.T1441A:p.C481S	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.11164545	NA	1	1	1	0.9983086	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	6083272	12A2p6	cell line	sgMsh2	6083272	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	21	0	0	NA	exonic	Ezhip	synonymous SNV	"Ezhip:NM_001033211:exon1:c.T51G:p.T17T,Ezhip:NM_001166433:exon1:c.T51G:p.T17T"	XqA1.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
SSC	chrX	7183889	12A2p6	cell line	sgMsh2	7183889	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	93	0	0	NA	exonic	Clcn5	nonsynonymous SNV	"Clcn5:NM_016691:exon3:c.T107C:p.I36T,Clcn5:NM_001243762:exon5:c.T317C:p.I106T"	XqA1.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	9063657	12A2p6	cell line	sgMsh2	9063657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	143	0	0	NA	exonic	Fthl17f	nonsynonymous SNV	Fthl17f:NM_001038697:exon1:c.A491G:p.N164S	XqA1.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	16724679	12A2p6	cell line	sgMsh2	16724679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	74	0	0	NA	exonic	Maob	nonsynonymous SNV	Maob:NM_172778:exon9:c.A1006G:p.T336A	XqA1.2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	21486522	12A2p6	cell line	sgMsh2	21486522	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.481	171	0	0	NA	exonic	Agtr2	frameshift insertion	Agtr2:NM_007429:exon3:c.395dupT:p.I135Yfs*7	XqA2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAT	frameshift	T	8	TTTTTTTT	1
SSC	chrX	37643145	12A2p6	cell line	sgMsh2	37643145	C	A	SNV	Mutect2;Vardict	2	0.033	354	0	0	NA	exonic	Rhox2g	nonsynonymous SNV	Rhox2g:NM_001114153:exon2:c.G120T:p.E40D	XqA3.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	38631186	12A2p6	cell line	sgMsh2	38631186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	94	0	0	NA	exonic	C1galt1c1	nonsynonymous SNV	C1galt1c1:NM_021550:exon2:c.A932C:p.N311T	XqA3.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	41826130	12A2p6	cell line	sgMsh2	41826130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	48	0	0	NA	exonic	Thoc2	nonsynonymous SNV	Thoc2:NM_001033422:exon24:c.G2789A:p.R930H	XqA4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	42578249	12A2p6	cell line	sgMsh2	42578249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	36	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon25:c.A4451G:p.N1484S	XqA4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	43591923	12A2p6	cell line	sgMsh2	43591923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	102	0	0	NA	exonic	Tex13c1	nonsynonymous SNV	Tex13c1:NM_001195271:exon1:c.T764C:p.M255T	XqA4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	44367716	12A2p6	cell line	sgMsh2	44367716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.599	37	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.A295G:p.T99A	XqA4	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	47884197	12A2p6	cell line	sgMsh2	47884197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	79	0	0	NA	exonic	Smarca1	nonsynonymous SNV	"Smarca1:NM_001290708:exon3:c.G280A:p.D94N,Smarca1:NM_001358618:exon3:c.G265A:p.D89N,Smarca1:NM_001358619:exon3:c.G280A:p.D94N,Smarca1:NM_053123:exon3:c.G280A:p.D94N"	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	48876311	12A2p6	cell line	sgMsh2	48876311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	67	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon3:c.A295G:p.S99G	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	49683769	12A2p6	cell line	sgMsh2	49683769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.548	98	0	0	NA	exonic	Olfr1320	nonsynonymous SNV	Olfr1320:NM_207240:exon1:c.T266C:p.L89S	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	53737717	12A2p6	cell line	sgMsh2	53737717	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.516	70	0	0	NA	exonic	Ct55	frameshift deletion	Ct55:NM_029142:exon5:c.571delT:p.F192Sfs*38	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC	chrX	53751521	12A2p6	cell line	sgMsh2	53751521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	44	0	0	NA	exonic	1700013H16Rik	nonsynonymous SNV	1700013H16Rik:NM_001200013:exon2:c.A323C:p.Q108P	XqA5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	56362784	12A2p6	cell line	sgMsh2	56362784	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.55	50	0	0	NA	exonic	Zfp449	frameshift deletion	"Zfp449:NM_001359276:exon4:c.356delA:p.K121Nfs*7,Zfp449:NM_030139:exon5:c.716delA:p.K241Nfs*7"	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
SSC	chrX	58031593	12A2p6	cell line	sgMsh2	58031593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	8	0	0	NA	exonic	Zic3	nonsynonymous SNV	Zic3:NM_009575:exon1:c.T413C:p.L138P	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	59250947	12A2p6	cell line	sgMsh2	59250947	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.427	27	0	0	NA	exonic	Fgf13	frameshift insertion	Fgf13:NM_001290414:exon3:c.68dupC:p.G24Wfs*27	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
SSC	chrX	59999509	12A2p6	cell line	sgMsh2	59999509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	88	0	0	NA	exonic	F9	nonsynonymous SNV	"F9:NM_001305797:exon1:c.A46G:p.T16A,F9:NM_007979:exon1:c.A46G:p.T16A"	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	60127042	12A2p6	cell line	sgMsh2	60127042	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.575	39	0	0	NA	exonic	Mcf2	frameshift insertion	"Mcf2:NM_001358998:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001358999:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001289730:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_133197:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_001289731:exon10:c.1329dupA:p.L444Tfs*5"	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGT	frameshift	T	5	TTTTT	1
SSC	chrX	60261752	12A2p6	cell line	sgMsh2	60261752	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	45	0	0	NA	exonic	Atp11c	nonsynonymous SNV	"Atp11c:NM_001001798:exon21:c.T2394G:p.I798M,Atp11c:NM_001037863:exon21:c.T2394G:p.I798M,Atp11c:NM_001359002:exon21:c.T2394G:p.I798M"	XqA6	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	64271265	12A2p6	cell line	sgMsh2	64271265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	86	0	0	NA	exonic	Slitrk4	nonsynonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1795G:p.T599A,Slitrk4:NM_178740:exon3:c.A1795G:p.T599A,Slitrk4:NM_001365111:exon4:c.A1795G:p.T599A"	XqA7.1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	69844125	12A2p6	cell line	sgMsh2	69844125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	39	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon12:c.G2769T:p.K923N	XqA7.2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	72257609	12A2p6	cell line	sgMsh2	72257609	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	44	0	0	NA	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon9:c.A2594C:p.K865T	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	73769419	12A2p6	cell line	sgMsh2	73769419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	38	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon26:c.A4657G:p.T1553A	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAC	nonsynonymous	C	5	CCCCC	NA
SSC	chrX	74313222	12A2p6	cell line	sgMsh2	74313222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	20	0	0	NA	exonic	Fam50a	nonsynonymous SNV	Fam50a:NM_138607:exon1:c.A8G:p.Q3R	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	74331088	12A2p6	cell line	sgMsh2	74331088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	48	0	0	NA	exonic	Plxna3	synonymous SNV	"Plxna3:NM_001358129:exon2:c.T93C:p.D31D,Plxna3:NM_008883:exon2:c.T93C:p.D31D"	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
SSC	chrX	75331457	12A2p6	cell line	sgMsh2	75331457	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	104	0	0	NA	exonic	F8	synonymous SNV	"F8:NM_001161373:exon9:c.T1374C:p.R458R,F8:NM_001161374:exon9:c.T1374C:p.R458R,F8:NM_007977:exon9:c.T1374C:p.R458R"	XqA7.3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
SSC	chrX	79302800	12A2p6	cell line	sgMsh2	79302800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	54	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon60:c.A8636G:p.Y2879C	XqB	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	79493800	12A2p6	cell line	sgMsh2	79493800	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	36	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon11:c.T1794C:p.D598D	XqB	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
SSC	chrX	81420164	12A2p6	cell line	sgMsh2	81420164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	77	0	0	NA	exonic	4930595M18Rik	nonsynonymous SNV	4930595M18Rik:NM_173435:exon4:c.A1936G:p.R646G	XqB	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	86251227	12A2p6	cell line	sgMsh2	86251227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	155	0	0	NA	exonic	Mageb4	synonymous SNV	Mageb4:NM_001033492:exon3:c.C1195T:p.L399L	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGT	synonymous	NA	NA	NA	NA
SSC	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	75	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	90892634	12A2p6	cell line	sgMsh2	90892634	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.569	45	0	0	NA	exonic	Gm44	frameshift deletion	Gm44:NM_001101450:exon1:c.493delA:p.K165Nfs*19	XqC1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chrX	92120423	12A2p6	cell line	sgMsh2	92120423	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.49	95	0	0	NA	exonic	Mageb18	frameshift deletion	Mageb18:NM_173783:exon5:c.212delA:p.N71Tfs*1	XqC2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	85	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	96470828	12A2p6	cell line	sgMsh2	96470828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	39	0	0	NA	exonic	Heph	nonsynonymous SNV	"Heph:NM_001159627:exon6:c.C721A:p.L241I,Heph:NM_001159628:exon6:c.C721A:p.L241I,Heph:NM_010417:exon6:c.C721A:p.L241I,Heph:NM_181273:exon6:c.C721A:p.L241I"	XqC3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	18	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.556	71	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.484	88	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chrX	103708008	12A2p6	cell line	sgMsh2	103708008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	67	0	0	NA	exonic	Slc16a2	nonsynonymous SNV	Slc16a2:NM_009197:exon3:c.A791G:p.K264R	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	100	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
SSC	chrX	106156739	12A2p6	cell line	sgMsh2	106156739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.604	94	0	0	NA	exonic	Tlr13	frameshift deletion	Tlr13:NM_205820:exon3:c.81delT:p.F30Sfs*3	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
SSC	chrX	107947055	12A2p6	cell line	sgMsh2	107947055	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	104	0	0	NA	exonic	Gm732	nonsynonymous SNV	Gm732:NM_001033252:exon2:c.C251A:p.P84H	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	108778381	12A2p6	cell line	sgMsh2	108778381	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	79	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon18:c.A1910T:p.Q637L	XqD	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	112515199	12A2p6	cell line	sgMsh2	112515199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	98	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon4:c.A382G:p.S128G,2010106E10Rik:NM_026333:exon4:c.A382G:p.S128G"	XqE1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	120401646	12A2p6	cell line	sgMsh2	120401646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	62	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.T2785C:p.F929L,Pcdh11x:NM_001271810:exon3:c.T2785C:p.F929L"	XqE2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TTT	nonsynonymous	CTA	8	CTACTACT	NA
SSC	chrX	122395485	12A2p6	cell line	sgMsh2	122395485	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	64	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1535T:p.D512V	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	126814960	12A2p6	cell line	sgMsh2	126814960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	146	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.G521A:p.R174K	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	127063090	12A2p6	cell line	sgMsh2	127063090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	56	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.T2897C:p.L966P	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	133865377	12A2p6	cell line	sgMsh2	133865377	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	70	0	0	NA	exonic	Tnmd	stopgain	Tnmd:NM_022322:exon7:c.G926A:p.W309X	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	TGG	nonsynonymous	GGTG	9	GGTGGGTGG	NA
SSC	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	41	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	134721417	12A2p6	cell line	sgMsh2	134721417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	96	0	0	NA	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.T1267C:p.L423L,Armcx1:NM_001166379:exon4:c.T1267C:p.L423L,Armcx1:NM_001166380:exon5:c.T1267C:p.L423L,Armcx1:NM_001166377:exon6:c.T1267C:p.L423L,Armcx1:NM_030066:exon6:c.T1267C:p.L423L"	XqE3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
SSC	chrX	138988778	12A2p6	cell line	sgMsh2	138988778	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	47	0	0	NA	exonic	Nrk	synonymous SNV	Nrk:NM_013724:exon20:c.A3297C:p.P1099P	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
SSC	chrX	139080483	12A2p6	cell line	sgMsh2	139080483	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.601	23	0	0	NA	exonic	Serpina7	frameshift deletion	"Serpina7:NM_177920:exon5:c.1083delT:p.H362Tfs*42,Serpina7:NM_001382371:exon6:c.1059delT:p.H354Tfs*42,Serpina7:NM_001382372:exon6:c.1059delT:p.H354Tfs*42"	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC	chrX	139236386	12A2p6	cell line	sgMsh2	139236386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	67	0	0	NA	exonic	Pwwp3b	nonsynonymous SNV	"Pwwp3b:NM_001164631:exon4:c.A1672G:p.I558V,Pwwp3b:NM_001164632:exon5:c.A1672G:p.I558V,Pwwp3b:NM_001164633:exon5:c.A1672G:p.I558V,Pwwp3b:NM_175541:exon6:c.A1672G:p.I558V,Pwwp3b:NM_001164630:exon7:c.A1672G:p.I558V"	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
SSC	chrX	140028155	12A2p6	cell line	sgMsh2	140028155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	88	0	0	NA	exonic	Nup62cl	nonsynonymous SNV	Nup62cl:NM_001081668:exon4:c.A346T:p.I116F	XqF1	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	143735268	12A2p6	cell line	sgMsh2	143735268	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	39	0	0	NA	exonic	Pak3	synonymous SNV	"Pak3:NM_001195047:exon7:c.C675G:p.R225R,Pak3:NM_008778:exon7:c.C612G:p.R204R,Pak3:NM_001195046:exon8:c.C720G:p.R240R,Pak3:NM_001195048:exon8:c.C657G:p.R219R,Pak3:NM_001195049:exon10:c.C612G:p.R204R"	XqF2	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
SSC	chrX	151233083	12A2p6	cell line	sgMsh2	151233083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	23	0	0	NA	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon7:c.T1534C:p.Y512H,Wnk3:NM_001271679:exon7:c.T1534C:p.Y512H"	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	59	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC	chrX	152061792	12A2p6	cell line	sgMsh2	152061792	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	85	0	0	NA	exonic	Smc1a	frameshift deletion	Smc1a:NM_019710:exon25:c.3685delA:p.N1229Tfs*46	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CAA	frameshift	CCAACC	16	CCAACCCCAACCCCAA	-1
SSC	chrX	152339886	12A2p6	cell line	sgMsh2	152339886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	81	0	0	NA	exonic	Tspyl2	synonymous SNV	"Tspyl2:NM_001358369:exon4:c.C1098A:p.L366L,Tspyl2:NM_029836:exon4:c.C1098A:p.L366L"	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GGA	synonymous	NA	NA	NA	NA
SSC	chrX	155623097	12A2p6	cell line	sgMsh2	155623097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.561	45	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon1:c.A214G:p.S72G	XqF3	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	164422992	12A2p6	cell line	sgMsh2	164422992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	31	0	0	NA	exonic	Piga	nonsynonymous SNV	Piga:NM_011081:exon2:c.T347C:p.I116T	XqF5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
SSC	chrX	166400997	12A2p6	cell line	sgMsh2	166400997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	49	0	0	NA	exonic	Ofd1	nonsynonymous SNV	Ofd1:NM_177429:exon19:c.A2564G:p.H855R	XqF5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC	chrX	167479139	12A2p6	cell line	sgMsh2	167479139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.608	49	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001290428:exon15:c.A1873G:p.S625G,Frmpd4:NM_001359072:exon15:c.A1984G:p.S662G,Frmpd4:NM_001368936:exon15:c.A1993G:p.S665G,Frmpd4:NM_001290427:exon16:c.A1969G:p.S657G,Frmpd4:NM_001369234:exon17:c.A2047G:p.S683G,Frmpd4:NM_001033330:exon18:c.A1969G:p.S657G"	XqF5	NA	NA	NA	NA	0.96	4.11164545	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	3216056	12A2p6	cell line	sgMsh2	3216056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	113	0	0	NA	exonic	Xkr4	nonsynonymous SNV	Xkr4:NM_001011874:exon3:c.T1910G:p.I637S	1qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	4346756	12A2p6	cell line	sgMsh2	4346756	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	189	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C4132A:p.L1378I	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.48E-09	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	4346883	12A2p6	cell line	sgMsh2	4346883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	228	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.T4005C:p.T1335T	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	5598941	12A2p6	cell line	sgMsh2	5598941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	136	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon3:c.A609G:p.E203E,Oprk1:NM_011011:exon3:c.A609G:p.E203E"	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	74	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	6263166	12A2p6	cell line	sgMsh2	6263166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	107	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.T4227C:p.C1409C	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	6820123	12A2p6	cell line	sgMsh2	6820123	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	50	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon11:c.A1778C:p.K593T,St18:NM_001244693:exon12:c.A1778C:p.K593T,St18:NM_001244692:exon13:c.A1778C:p.K593T"	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996548	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	7169594	12A2p6	cell line	sgMsh2	7169594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	25	0	0	NA	exonic	Pcmtd1	nonsynonymous SNV	Pcmtd1:NM_183028:exon6:c.G786T:p.E262D	1qA1	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9961145	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	148	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.67E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	9690155	12A2p6	cell line	sgMsh2	9690155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	54	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon4:c.T217C:p.C73R,Mybl1:NM_008651:exon4:c.T217C:p.C73R"	1qA2	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	10037740	12A2p6	cell line	sgMsh2	10037740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	80	0	0	NA	exonic	Cops5	nonsynonymous SNV	Cops5:NM_013715:exon1:c.A73G:p.I25V	1qA2	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	11185964	12A2p6	cell line	sgMsh2	11185964	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	58	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon29:c.T3558G:p.G1186G	1qA2	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	13125490	12A2p6	cell line	sgMsh2	13125490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	144	0	0	NA	exonic	Prdm14	nonsynonymous SNV	Prdm14:NM_001081209:exon2:c.A346G:p.T116A	1qA3	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	18130241	12A2p6	cell line	sgMsh2	18130241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	109	0	0	NA	exonic	Crisp4	synonymous SNV	"Crisp4:NM_001347048:exon4:c.T219C:p.S73S,Crisp4:NM_001347047:exon5:c.T336C:p.S112S"	1qA3	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	20523881	12A2p6	cell line	sgMsh2	20523881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	188	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon32:c.T4007C:p.V1336A	1qA4	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.53E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	20935005	12A2p6	cell line	sgMsh2	20935005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	111	0	0	NA	exonic	Paqr8	nonsynonymous SNV	"Paqr8:NM_001355122:exon3:c.T382G:p.L128V,Paqr8:NM_028829:exon3:c.T382G:p.L128V"	1qA4	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	23370041	12A2p6	cell line	sgMsh2	23370041	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	138	0	0	NA	exonic	Ogfrl1	frameshift deletion	"Ogfrl1:NM_001379083:exon5:c.890delA:p.K297Rfs*82,Ogfrl1:NM_001081079:exon7:c.1103delA:p.K368Rfs*82,Ogfrl1:NM_001379082:exon7:c.1106delA:p.K369Rfs*82"	1qA5	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	C	5	CCCCC	-1
SSC_p20	chr1	26684572	12A2p6	cell line	sgMsh2	26684572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	168	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C1526T:p.T509I	1qA5	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	28777461	12A2p6	cell line	sgMsh2	28777461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	132	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A1489G:p.T497A	1qA5	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	27	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	33783881	12A2p6	cell line	sgMsh2	33783881	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	200	0	0	NA	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001359274:exon5:c.G396T:p.Q132H,Zfp451:NM_001359275:exon5:c.G396T:p.Q132H,Zfp451:NM_133817:exon5:c.G396T:p.Q132H"	1qB	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.17E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	34182130	12A2p6	cell line	sgMsh2	34182130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	150	0	0	NA	exonic	Dst	synonymous SNV	Dst:NM_010081:exon24:c.A7014G:p.E2338E	1qB	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	34229207	12A2p6	cell line	sgMsh2	34229207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	55	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_133833:exon52:c.A9687G:p.T3229T,Dst:NM_134448:exon57:c.A15729G:p.T5243T,Dst:NM_001276764:exon60:c.A16263G:p.T5421T"	1qB	chr1-3216742-34288324	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	1	0.9935005	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	34499296	12A2p6	cell line	sgMsh2	34499296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	140	0	0	NA	exonic	Prss39	nonsynonymous SNV	Prss39:NM_009355:exon2:c.T241C:p.W81R	1qB	chr1-34289226-36799178	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	34537173	12A2p6	cell line	sgMsh2	34537173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	53	0	0	NA	exonic	Cfc1	nonsynonymous SNV	Cfc1:NM_007685:exon4:c.T313C:p.C105R	1qB	chr1-34289226-36799178	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999742	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	36104040	12A2p6	cell line	sgMsh2	36104040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	131	0	0	NA	exonic	Hs6st1	nonsynonymous SNV	Hs6st1:NM_015818:exon2:c.A1055G:p.K352R	1qB	chr1-34289226-36799178	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	36316314	12A2p6	cell line	sgMsh2	36316314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	64	0	0	NA	exonic	Arid5a	nonsynonymous SNV	"Arid5a:NM_001172205:exon2:c.C110A:p.P37H,Arid5a:NM_001172206:exon2:c.C107A:p.P36H,Arid5a:NM_145996:exon2:c.C110A:p.P37H,Arid5a:NM_001290726:exon3:c.C197A:p.P66H"	1qB	chr1-34289226-36799178	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	CCC	nonsynonymous	CCCA	8	CCCACCCA	NA
SSC_p20	chr1	36808131	12A2p6	cell line	sgMsh2	36808131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	79	0	0	NA	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon31:c.A3885G:p.P1295P	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	36811512	12A2p6	cell line	sgMsh2	36811512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	149	0	0	NA	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon28:c.A3090G:p.E1030E	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.44E-08	TTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	37261918	12A2p6	cell line	sgMsh2	37261918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	90	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon6:c.A1718G:p.Y573C,Cnga3:NM_001282010:exon8:c.A1832G:p.Y611C"	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	37807068	12A2p6	cell line	sgMsh2	37807068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	79	0	0	NA	exonic	Tsga10	nonsynonymous SNV	"Tsga10:NM_001290721:exon12:c.A976G:p.I326V,Tsga10:NM_001290720:exon13:c.A976G:p.I326V,Tsga10:NM_207228:exon13:c.A976G:p.I326V"	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	37879272	12A2p6	cell line	sgMsh2	37879272	A	-	Deletion	Mutect2;Vardict	2	0.04	130	0	0	NA	exonic	Mitd1	frameshift deletion	"Mitd1:NM_001356262:exon7:c.746delT:p.I249delinsNDVWRLHSCHGF,Mitd1:NM_026913:exon7:c.746delT:p.I249delinsNDV"	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.235871398	NA	NA	TAT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	38210386	12A2p6	cell line	sgMsh2	38210386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	86	0	0	NA	exonic	Aff3	nonsynonymous SNV	Aff3:NM_001290814:exon12:c.A1639G:p.S547G	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.684027055	2	0.5537192	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	39539904	12A2p6	cell line	sgMsh2	39539904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	160	0	0	NA	exonic	Cnot11	synonymous SNV	Cnot11:NM_028043:exon4:c.A849G:p.P283P	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	CAC	synonymous	CCA	8	CCACCACC	NA
SSC_p20	chr1	39672272	12A2p6	cell line	sgMsh2	39672272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	86	0	0	NA	exonic	Rfx8	nonsynonymous SNV	Rfx8:NM_001145660:exon13:c.A1196G:p.K399R	1qB	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	43554262	12A2p6	cell line	sgMsh2	43554262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	100	0	0	NA	exonic	Nck2	nonsynonymous SNV	Nck2:NM_010879:exon4:c.A628G:p.T210A	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	44206380	12A2p6	cell line	sgMsh2	44206380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	135	0	0	NA	exonic	Mettl21e	synonymous SNV	Mettl21e:NM_207281:exon5:c.A705G:p.K235K	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	44708633	12A2p6	cell line	sgMsh2	44708633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	140	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon3:c.T45C:p.H15H	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	44780994	12A2p6	cell line	sgMsh2	44780994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	111	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon9:c.T636G:p.P212P	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	45329099	12A2p6	cell line	sgMsh2	45329099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	85	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon13:c.G941A:p.G314E	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	45402107	12A2p6	cell line	sgMsh2	45402107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	71	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon30:c.A1997G:p.Q666R	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	46299840	12A2p6	cell line	sgMsh2	46299840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	71	0	0	NA	exonic	Dnah7b	synonymous SNV	Dnah7b:NM_001368717:exon53:c.A9915G:p.L3305L	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	46455844	12A2p6	cell line	sgMsh2	46455844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	47	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon4:c.T231C:p.V77V	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	TTA	synonymous	A	5	AAAAA	NA
SSC_p20	chr1	46775247	12A2p6	cell line	sgMsh2	46775247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	316	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon58:c.A10858G:p.M3620V	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	51769071	12A2p6	cell line	sgMsh2	51769071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	51	0	0	NA	exonic	Myo1b	nonsynonymous SNV	"Myo1b:NM_001161817:exon22:c.A2315G:p.E772G,Myo1b:NM_001290982:exon22:c.A2315G:p.E772G,Myo1b:NM_010863:exon22:c.A2315G:p.E772G"	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996867	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	52212343	12A2p6	cell line	sgMsh2	52212343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	0	0	NA	exonic	Gls	nonsynonymous SNV	"Gls:NM_001081081:exon6:c.T854C:p.V285A,Gls:NM_001113383:exon6:c.T854C:p.V285A"	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999194	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	53433018	12A2p6	cell line	sgMsh2	53433018	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	320	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon58:c.T10589G:p.V3530G	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.171006764	3	1	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	53567158	12A2p6	cell line	sgMsh2	53567158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	108	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3702C:p.V1234V	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999988	TAA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	53567203	12A2p6	cell line	sgMsh2	53567203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3657C:p.D1219D	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	53761057	12A2p6	cell line	sgMsh2	53761057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	71	0	0	NA	exonic	Stk17b	nonsynonymous SNV	Stk17b:NM_133810:exon7:c.A761G:p.Y254C	1qC1.1	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999955	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	55355724	12A2p6	cell line	sgMsh2	55355724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	102	0	0	NA	exonic	Boll	synonymous SNV	"Boll:NM_001367887:exon3:c.T181C:p.L61L,Boll:NM_001368767:exon3:c.T181C:p.L61L,Boll:NM_029267:exon3:c.T181C:p.L61L"	1qC1.2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	56891225	12A2p6	cell line	sgMsh2	56891225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	193	0	0	NA	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.A638C:p.N213T,Satb2:NM_001358580:exon7:c.A638C:p.N213T,Satb2:NM_001358581:exon7:c.A638C:p.N213T"	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.33E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	57406795	12A2p6	cell line	sgMsh2	57406795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	46	0	0	NA	exonic	Maip1	nonsynonymous SNV	Maip1:NM_001081181:exon1:c.T23C:p.L8P	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994913	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	58016226	12A2p6	cell line	sgMsh2	58016226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	119	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.T1268C:p.V423A,Sgo2a:NM_199007:exon7:c.T1568C:p.V523A"	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	31	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9978249	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
SSC_p20	chr1	58476438	12A2p6	cell line	sgMsh2	58476438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	243	0	0	NA	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon8:c.T766C:p.L256L,Orc2:NM_001271526:exon11:c.T910C:p.L304L,Orc2:NM_008765:exon11:c.T910C:p.L304L"	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	59051047	12A2p6	cell line	sgMsh2	59051047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	216	0	0	NA	exonic	C2cd6	nonsynonymous SNV	"C2cd6:NM_026600:exon13:c.T1550C:p.L517P,C2cd6:NM_175200:exon13:c.T1550C:p.L517P"	1qC1.3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	59764693	12A2p6	cell line	sgMsh2	59764693	T	C	SNV	Mutect2;Vardict	2	0.058	93	0	0	NA	exonic	Bmpr2	nonsynonymous SNV	Bmpr2:NM_007561:exon1:c.T41C:p.L14P	1qC2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.342013528	3	0.5582642	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	60087148	12A2p6	cell line	sgMsh2	60087148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	102	0	0	NA	exonic	Wdr12	synonymous SNV	"Wdr12:NM_021312:exon6:c.A507G:p.L169L,Wdr12:NM_001199060:exon7:c.A507G:p.L169L,Wdr12:NM_001199061:exon7:c.A507G:p.L169L"	1qC2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9939916	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	92	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	60978008	12A2p6	cell line	sgMsh2	60978008	T	-	Deletion	Strelka2;Vardict	2	0.35	60	0	0	NA	exonic	Icos	frameshift deletion	Icos:NM_017480:exon1:c.50delT:p.L18fs*0	1qC2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr1	63585429	12A2p6	cell line	sgMsh2	63585429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	115	0	0	NA	exonic	Adam23	synonymous SNV	Adam23:NM_011780:exon25:c.C2415T:p.V805V	1qC2	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	65388737	12A2p6	cell line	sgMsh2	65388737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	115	0	0	NA	exonic	Pth2r	nonsynonymous SNV	Pth2r:NM_139270:exon13:c.T1568C:p.V523A	1qC3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	66672782	12A2p6	cell line	sgMsh2	66672782	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	107	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368825:exon53:c.G8067T:p.Q2689H,Unc80:NM_001368824:exon54:c.G8307T:p.Q2769H,Unc80:NM_175510:exon54:c.G8262T:p.Q2754H"	1qC3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	70461128	12A2p6	cell line	sgMsh2	70461128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	121	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon6:c.T627C:p.P209P,Spag16:NM_029160:exon15:c.T1614C:p.P538P"	1qC3	chr1-36799179-72592159	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	74191855	12A2p6	cell line	sgMsh2	74191855	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	94	0	0	NA	exonic	Cxcr1	stopgain	Cxcr1:NM_178241:exon2:c.1007delT:p.L336fs*0	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
SSC_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	111	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	74594618	12A2p6	cell line	sgMsh2	74594618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	60	0	0	NA	exonic	Rnf25	frameshift deletion	"Rnf25:NM_001305230:exon9:c.731delA:p.K244Rfs*30,Rnf25:NM_021313:exon9:c.734delA:p.K245Rfs*30"	1qC3	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr1	74735437	12A2p6	cell line	sgMsh2	74735437	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	164	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon3:c.C613T:p.P205S	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	184	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	75274470	12A2p6	cell line	sgMsh2	75274470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	135	0	0	NA	exonic	Resp18	nonsynonymous SNV	Resp18:NM_009049:exon3:c.A271G:p.S91G	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	75402461	12A2p6	cell line	sgMsh2	75402461	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	57	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001173477:exon4:c.C322A:p.L108M,Speg:NM_001085370:exon7:c.C679A:p.L227M,Speg:NM_007463:exon9:c.C2884A:p.L962M,Speg:NM_001085371:exon10:c.C2566A:p.L856M"	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	75411103	12A2p6	cell line	sgMsh2	75411103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	80	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon15:c.C1982A:p.A661D,Speg:NM_007463:exon17:c.C4187A:p.A1396D"	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	GCT	nonsynonymous	TGCTG	10	TGCTGTGCTG	NA
SSC_p20	chr1	78443700	12A2p6	cell line	sgMsh2	78443700	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	151	0	0	NA	exonic	Farsb	nonsynonymous SNV	"Farsb:NM_001278075:exon16:c.T1553G:p.I518S,Farsb:NM_011811:exon16:c.T1553G:p.I518S"	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	79435569	12A2p6	cell line	sgMsh2	79435569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	145	0	0	NA	exonic	Scg2	nonsynonymous SNV	"Scg2:NM_009129:exon2:c.A1436C:p.Q479P,Scg2:NM_001310680:exon3:c.A1316C:p.Q439P"	1qC4	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.54E-08	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	83116876	12A2p6	cell line	sgMsh2	83116876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	67	0	0	NA	exonic	Ccl20	nonsynonymous SNV	"Ccl20:NM_001159738:exon1:c.T53C:p.L18P,Ccl20:NM_016960:exon1:c.T53C:p.L18P"	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	84159243	12A2p6	cell line	sgMsh2	84159243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	75	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon2:c.A166G:p.S56G	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	84494822	12A2p6	cell line	sgMsh2	84494822	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	85	0	0	NA	exonic	Dner	synonymous SNV	Dner:NM_152915:exon6:c.C1056A:p.A352A	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.6647946	AGG	synonymous	GGCA	8	GGCAGGCA	NA
SSC_p20	chr1	85248322	12A2p6	cell line	sgMsh2	85248322	T	-	Deletion	Strelka2;Vardict	2	0.1132	468	0	0	NA	exonic	C130026I21Rik	frameshift deletion	"C130026I21Rik:NM_001037909:exon6:c.569delA:p.K190Sfs*6,C130026I21Rik:NM_175219:exon7:c.653delA:p.K218Sfs*6"	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.667516058	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr1	85550229	12A2p6	cell line	sgMsh2	85550229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	359	0	0	NA	exonic	Gm7592	synonymous SNV	Gm7592:NM_001378663:exon2:c.A543G:p.R181R	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Strelka2;Vardict	2	0.1255	239	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.740046513	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	85586282	12A2p6	cell line	sgMsh2	85586282	T	-	Deletion	Strelka2;Vardict	2	0.1767	266	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon7:c.753delA:p.K251Nfs*21,Sp110:NM_175397:exon8:c.753delA:p.K251Nfs*21"	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	86110599	12A2p6	cell line	sgMsh2	86110599	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	160	0	0	NA	exonic	Htr2b	stopgain	Htr2b:NM_008311:exon2:c.T284A:p.L95X	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	9.04E-09	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	86132750	12A2p6	cell line	sgMsh2	86132750	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	66	0	0	NA	exonic	Psmd1	frameshift deletion	Psmd1:NM_027357:exon22:c.2518delA:p.E843Kfs*46	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	29	AAAAAAAAAGAAAAAGAAAAAGAAAAAAA	-1
SSC_p20	chr1	86357432	12A2p6	cell line	sgMsh2	86357432	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	69	0	0	NA	exonic	Ncl	frameshift deletion	Ncl:NM_010880:exon3:c.156delA:p.G53Afs*30	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	87407650	12A2p6	cell line	sgMsh2	87407650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	145	0	0	NA	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon12:c.A1194G:p.E398E,Gigyf2:NM_146112:exon12:c.A1212G:p.E404E"	1qC5	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.54E-08	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	87683860	12A2p6	cell line	sgMsh2	87683860	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	166	0	0	NA	exonic	Inpp5d	frameshift deletion	"Inpp5d:NM_001110192:exon9:c.1030delA:p.I346Sfs*10,Inpp5d:NM_001110193:exon9:c.1033delA:p.I347Sfs*10,Inpp5d:NM_010566:exon9:c.1033delA:p.I347Sfs*10"	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr1	87982016	12A2p6	cell line	sgMsh2	87982016	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	148	0	0	NA	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon13:c.T1715A:p.I572K,Usp40:NM_001198573:exon13:c.T1715A:p.I572K"	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	88228246	12A2p6	cell line	sgMsh2	88228246	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.052	829	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C99A:p.T33T	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.306632818	3	1.01E-09	CCA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	374	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.259458538	3	1.05E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	91319076	12A2p6	cell line	sgMsh2	91319076	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	113	0	0	NA	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon11:c.A1108T:p.S370C	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	91370451	12A2p6	cell line	sgMsh2	91370451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	123	0	0	NA	exonic	Erfe	synonymous SNV	Erfe:NM_173395:exon5:c.T682C:p.L228L	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	92573497	12A2p6	cell line	sgMsh2	92573497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	282	0	0	NA	exonic	Olfr1413	nonsynonymous SNV	Olfr1413:NM_147037:exon1:c.T325C:p.F109L	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTT	nonsynonymous	TTC	8	TTCTTCTT	NA
SSC_p20	chr1	92588592	12A2p6	cell line	sgMsh2	92588592	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	318	0	0	NA	exonic	Olfr1412	nonsynonymous SNV	Olfr1412:NM_146277:exon1:c.A261C:p.K87N	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	92596593	12A2p6	cell line	sgMsh2	92596593	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	265	0	0	NA	exonic	Olfr1411	frameshift deletion	Olfr1411:NM_146490:exon1:c.73delG:p.G27Vfs*25	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	8	GGGGGGGG	-1
SSC_p20	chr1	92982967	12A2p6	cell line	sgMsh2	92982968	GT	-	Deletion	Strelka2;Vardict	2	0.0581	86	0	0	NA	exonic	Gpr35	frameshift deletion	"Gpr35:NM_001104529:exon2:c.400_401del:p.V136Gfs*67,Gpr35:NM_001271766:exon2:c.400_401del:p.V136Gfs*67,Gpr35:NM_022320:exon2:c.400_401del:p.V136Gfs*67"	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.342603206	NA	NA	AGT	frameshift	GT	9	GTGTGTGTG	-2
SSC_p20	chr1	93159815	12A2p6	cell line	sgMsh2	93159815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	74	0	0	NA	exonic	Mab21l4	synonymous SNV	"Mab21l4:NM_001159940:exon2:c.T315C:p.T105T,Mab21l4:NM_172411:exon2:c.T315C:p.T105T"	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	93282827	12A2p6	cell line	sgMsh2	93282827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	66	0	0	NA	exonic	Sned1	nonsynonymous SNV	Sned1:NM_172463:exon21:c.G2849A:p.G950E	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999268	GGA	nonsynonymous	GGAT	8	GGATGGAT	NA
SSC_p20	chr1	93335703	12A2p6	cell line	sgMsh2	93335703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	117	0	0	NA	exonic	Pask	synonymous SNV	Pask:NM_080850:exon3:c.T330C:p.R110R	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	155	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-72595512-93413733	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	93792853	12A2p6	cell line	sgMsh2	93792853	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	107	0	0	NA	exonic	Dtymk	nonsynonymous SNV	Dtymk:NM_001105667:exon5:c.C619A:p.L207M	1qD	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	95667162	12A2p6	cell line	sgMsh2	95667162	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	148	0	0	NA	exonic	St8sia4	nonsynonymous SNV	"St8sia4:NM_001159745:exon1:c.A100T:p.T34S,St8sia4:NM_009183:exon1:c.A100T:p.T34S"	1qD	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.67E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	58	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr1	106004165	12A2p6	cell line	sgMsh2	106004165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	125	0	0	NA	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon3:c.T1096C:p.Y366H,Zcchc2:NM_001122676:exon3:c.T1096C:p.Y366H"	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	107000780	12A2p6	cell line	sgMsh2	107000780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	133	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon8:c.T1129C:p.S377P	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	107159045	12A2p6	cell line	sgMsh2	107159045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	138	0	0	NA	exonic	Serpinb3b	synonymous SNV	Serpinb3b:NM_198680:exon3:c.A195G:p.T65T	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	110052960	12A2p6	cell line	sgMsh2	110052960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	153	0	0	NA	exonic	Cdh7	nonsynonymous SNV	"Cdh7:NM_001316743:exon4:c.C617T:p.P206L,Cdh7:NM_172853:exon4:c.C617T:p.P206L,Cdh7:NM_001316744:exon5:c.C443T:p.P148L"	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	110919620	12A2p6	cell line	sgMsh2	110919620	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	124	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon8:c.A1258C:p.I420L,Cdh19:NM_001356415:exon9:c.A1258C:p.I420L"	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	110925064	12A2p6	cell line	sgMsh2	110925064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	142	0	0	NA	exonic	Cdh19	synonymous SNV	"Cdh19:NM_001081386:exon7:c.A1140G:p.G380G,Cdh19:NM_001356415:exon8:c.A1140G:p.G380G"	1qE2.1	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.71E-08	TTC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	115685184	12A2p6	cell line	sgMsh2	115685184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	456	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon1:c.A48G:p.S16S,Cntnap5a:NM_001371013:exon1:c.A48G:p.S16S"	1qE2.3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	119691821	12A2p6	cell line	sgMsh2	119691821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	141	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon17:c.T1524C:p.G508G	1qE2.3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	112	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	121557479	12A2p6	cell line	sgMsh2	121557479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	202	0	0	NA	exonic	Ddx18	nonsynonymous SNV	Ddx18:NM_025860:exon10:c.A1531G:p.N511D	1qE2.3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.14E-09	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.177	147	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.94E-08	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128193486	12A2p6	cell line	sgMsh2	128193486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	54	0	0	NA	exonic	R3hdm1	synonymous SNV	"R3hdm1:NM_001357482:exon18:c.T1755C:p.H585H,R3hdm1:NM_181750:exon18:c.T1755C:p.H585H"	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	128236639	12A2p6	cell line	sgMsh2	128236639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	195	0	0	NA	exonic	R3hdm1	nonsynonymous SNV	"R3hdm1:NM_001357482:exon27:c.T3289C:p.S1097P,R3hdm1:NM_181750:exon27:c.T3289C:p.S1097P"	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.27E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128291951	12A2p6	cell line	sgMsh2	128291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	110	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon13:c.A4960G:p.S1654G	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128300744	12A2p6	cell line	sgMsh2	128300744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	138	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A3011G:p.N1004S	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128304111	12A2p6	cell line	sgMsh2	128304111	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	72	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon7:c.A2000T:p.E667V	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128307923	12A2p6	cell line	sgMsh2	128307923	C	A	SNV	Mutect2;Vardict	2	0.048	87	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon6:c.G1346T:p.R449M	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.283045678	3	0.9781556	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	128348373	12A2p6	cell line	sgMsh2	128348373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	76	0	0	NA	exonic	Mcm6	nonsynonymous SNV	"Mcm6:NM_001313695:exon7:c.A1074G:p.I358M,Mcm6:NM_008567:exon7:c.A1074G:p.I358M"	1qE3	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	130655982	12A2p6	cell line	sgMsh2	130655982	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	62	0	0	NA	exonic	C4bp	nonsynonymous SNV	C4bp:NM_007576:exon3:c.C248T:p.T83I	1qE4	chr1-93413734-130737944	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	130813146	12A2p6	cell line	sgMsh2	130813146	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.256	123	0	0	NA	exonic	Fcamr	nonsynonymous SNV	"Fcamr:NM_001170632:exon5:c.T1301G:p.M434R,Fcamr:NM_144960:exon5:c.T1133G:p.M378R"	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	74	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	26	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9964723	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	134746867	12A2p6	cell line	sgMsh2	134746867	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	109	0	0	NA	exonic	Syt2	nonsynonymous SNV	"Syt2:NM_001355726:exon8:c.A1042C:p.I348L,Syt2:NM_009307:exon9:c.A1042C:p.I348L"	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	134879721	12A2p6	cell line	sgMsh2	134879721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	89	0	0	NA	exonic	Ppp1r12b	nonsynonymous SNV	"Ppp1r12b:NM_001368829:exon8:c.A662G:p.N221S,Ppp1r12b:NM_001081307:exon9:c.A1166G:p.N389S,Ppp1r12b:NM_001368827:exon9:c.A1166G:p.N389S"	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	134999360	12A2p6	cell line	sgMsh2	134999360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	139	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon12:c.A1090G:p.I364V	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	135301934	12A2p6	cell line	sgMsh2	135301934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	176	0	0	NA	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon6:c.A434G:p.Y145C,Timm17a:NM_001360858:exon6:c.A263G:p.Y88C,Timm17a:NM_011590:exon6:c.A500G:p.Y167C"	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.70E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	136070638	12A2p6	cell line	sgMsh2	136070639	TT	AA	DBS	Mutect2;Vardict	2	0.279	63	0	0	NA	exonic	Cacna1s	nonframeshift substitution	"Cacna1s:NM_001081023:exon4:c.403_404AA:p.F135N,Cacna1s:NM_014193:exon4:c.403_404AA:p.F135N"	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	136417208	12A2p6	cell line	sgMsh2	136417208	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	144	0	0	NA	exonic	Ddx59	nonsynonymous SNV	Ddx59:NM_026500:exon2:c.G616A:p.E206K	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	2	0.9992492	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	138498589	12A2p6	cell line	sgMsh2	138498589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	146	0	0	NA	exonic	Nek7	nonsynonymous SNV	Nek7:NM_021605:exon9:c.A785C:p.H262P	1qE4	chr1-130740724-138842236	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	139432013	12A2p6	cell line	sgMsh2	139432013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	100	0	0	NA	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon5:c.T1480C:p.Y494H	1qE4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	139456816	12A2p6	cell line	sgMsh2	139456816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	96	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon2:c.T350C:p.L117P	1qE4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	139479633	12A2p6	cell line	sgMsh2	139479633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	101	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T6257C:p.M2086T	1qE4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	ATG	nonsynonymous	CACATG	12	CACATGCACATG	NA
SSC_p20	chr1	139507581	12A2p6	cell line	sgMsh2	139507581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	181	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon4:c.T463C:p.L155L	1qF	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.05E-09	TTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	139810826	12A2p6	cell line	sgMsh2	139810826	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	152	0	0	NA	exonic	Cfhr2	synonymous SNV	Cfhr2:NM_001025575:exon6:c.A996G:p.V332V	1qF	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.85E-08	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	140596025	12A2p6	cell line	sgMsh2	140596025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	200	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon27:c.T3262C:p.S1088P	1qF	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.17E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	144139554	12A2p6	cell line	sgMsh2	144139554	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	224	0	0	NA	exonic	Rgs13	nonsynonymous SNV	Rgs13:NM_153171:exon6:c.A424C:p.K142Q	1qF	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.02E-09	TTT	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr1	150743784	12A2p6	cell line	sgMsh2	150743784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	116	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon24:c.A3578C:p.N1193T	1qG1	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.72530455	1	0.6632328	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	151811612	12A2p6	cell line	sgMsh2	151811612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	45	0	0	NA	exonic	Edem3	nonsynonymous SNV	"Edem3:NM_001039644:exon19:c.T2300C:p.F767S,Edem3:NM_001311165:exon19:c.T2243C:p.F748S,Edem3:NM_001311166:exon19:c.T2246C:p.F749S"	1qG2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994396	TTC	nonsynonymous	CTGTTC	12	CTGTTCCTGTTC	NA
SSC_p20	chr1	152844296	12A2p6	cell line	sgMsh2	152844296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	142	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon17:c.A2473G:p.I825V,Smg7:NM_001160256:exon17:c.A2335G:p.I779V,Smg7:NM_001160257:exon18:c.A2359G:p.I787V,Smg7:NM_001359257:exon18:c.A1330G:p.I444V"	1qG3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.71E-08	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	153760822	12A2p6	cell line	sgMsh2	153760822	A	-	Deletion	Strelka2;Vardict	2	0.2273	66	0	0	NA	exonic	Rnasel	frameshift deletion	Rnasel:NM_011882:exon8:c.1947delA:p.N652Tfs*6	1qG3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
SSC_p20	chr1	153850771	12A2p6	cell line	sgMsh2	153850771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	171	0	0	NA	exonic	Teddm2	nonsynonymous SNV	Teddm2:NM_178243:exon1:c.A356G:p.N119S	1qG3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.77E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	153892064	12A2p6	cell line	sgMsh2	153892064	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	191	0	0	NA	exonic	Teddm1a	nonsynonymous SNV	Teddm1a:NM_178244:exon1:c.T273A:p.F91L	1qG3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.40E-09	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	156635122	12A2p6	cell line	sgMsh2	156635122	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	183	0	0	NA	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.T1466A:p.I489N,Abl2:NM_009595:exon9:c.T1466A:p.I489N"	1qG3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.86E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	161833455	12A2p6	cell line	sgMsh2	161833455	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	232	0	0	NA	exonic	Suco	nonsynonymous SNV	"Suco:NM_001357401:exon19:c.A2874G:p.I958M,Suco:NM_001357402:exon19:c.A2862G:p.I954M,Suco:NM_172645:exon19:c.A2874G:p.I958M"	1qH2.1	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.165109979	3	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	162677426	12A2p6	cell line	sgMsh2	162677426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	85	0	0	NA	exonic	Prrc2c	synonymous SNV	Prrc2c:NM_001081290:exon32:c.T7851C:p.S2617S	1qH2.1	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	162954403	12A2p6	cell line	sgMsh2	162954403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	0	0	NA	exonic	Fmo3	synonymous SNV	Fmo3:NM_008030:exon9:c.A1380G:p.E460E	1qH2.1	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	163703049	12A2p6	cell line	sgMsh2	163703049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	125	0	0	NA	exonic	Mettl11b	nonsynonymous SNV	Mettl11b:NM_001143956:exon4:c.A820G:p.M274V	1qH2.1	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	164161866	12A2p6	cell line	sgMsh2	164161866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	231	0	0	NA	exonic	F5	synonymous SNV	F5:NM_007976:exon3:c.T336C:p.H112H	1qH2.2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	ATC	synonymous	CATC	9	CATCCATCC	NA
SSC_p20	chr1	164194057	12A2p6	cell line	sgMsh2	164194057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	186	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon13:c.A4100G:p.Q1367R	1qH2.2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.65E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	164257135	12A2p6	cell line	sgMsh2	164257135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	294	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	"Slc19a2:NM_001276455:exon2:c.T593C:p.V198A,Slc19a2:NM_054087:exon2:c.T593C:p.V198A"	1qH2.2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	164257255	12A2p6	cell line	sgMsh2	164257255	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	179	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	Slc19a2:NM_054087:exon2:c.T713G:p.V238G	1qH2.2	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.27E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	127	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	166238632	12A2p6	cell line	sgMsh2	166238632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	51	0	0	NA	exonic	Mael	nonsynonymous SNV	Mael:NM_175296:exon1:c.A35G:p.Y12C	1qH2.3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996867	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	169655604	12A2p6	cell line	sgMsh2	169655604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	54	0	0	NA	exonic	Rgs5	synonymous SNV	"Rgs5:NM_001313705:exon1:c.G27A:p.P9P,Rgs5:NM_009063:exon1:c.G27A:p.P9P"	1qH2.3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	169744490	12A2p6	cell line	sgMsh2	169744490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	116	0	0	NA	exonic	Rgs4	nonsynonymous SNV	Rgs4:NM_009062:exon4:c.T239C:p.L80P	1qH2.3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	170208719	12A2p6	cell line	sgMsh2	170208720	AT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.129	106	0	0	NA	exonic	Uhmk1	frameshift deletion	"Uhmk1:NM_001360809:exon4:c.516_517del:p.F173Cfs*2,Uhmk1:NM_010633:exon4:c.783_784del:p.F262Cfs*2"	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	NA	NA	AAT	frameshift	NA	NA	NA	-2
SSC_p20	chr1	170855122	12A2p6	cell line	sgMsh2	170855122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	166	0	0	NA	exonic	Atf6	synonymous SNV	Atf6:NM_001081304:exon2:c.T120C:p.H40H	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.49E-09	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	156	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.28E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	171286521	12A2p6	cell line	sgMsh2	171286521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	68	0	0	NA	exonic	Usp21	synonymous SNV	Usp21:NM_013919:exon2:c.A429G:p.A143A	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	1	0.9998423	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	171384812	12A2p6	cell line	sgMsh2	171384812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	47	0	0	NA	exonic	Nectin4	nonsynonymous SNV	"Nectin4:NM_001122680:exon5:c.A977G:p.Q326R,Nectin4:NM_027893:exon5:c.A977G:p.Q326R"	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	171460557	12A2p6	cell line	sgMsh2	171460557	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	198	0	0	NA	exonic	F11r	synonymous SNV	F11r:NM_172647:exon3:c.C150A:p.T50T	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.20E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	172246733	12A2p6	cell line	sgMsh2	172246733	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	126	0	0	NA	exonic	Atp1a4	frameshift deletion	Atp1a4:NM_013734:exon8:c.952delT:p.W318Gfs*36	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr1	172319308	12A2p6	cell line	sgMsh2	172319308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	143	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon6:c.T1736C:p.F579S	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	172560324	12A2p6	cell line	sgMsh2	172560324	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	104	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon3:c.T316C:p.Y106H	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.365600668	2	0.805127	GTA	nonsynonymous	CCAG	8	CCAGCCAG	NA
SSC_p20	chr1	173203796	12A2p6	cell line	sgMsh2	173203796	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.299	217	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.T439C:p.S147P	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	173203798	12A2p6	cell line	sgMsh2	173203798	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.299	217	0	0	NA	exonic	Olfr218	synonymous SNV	Olfr218:NM_001001809:exon1:c.T441C:p.S147S	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	242	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	173642702	12A2p6	cell line	sgMsh2	173642702	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	283	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon5:c.C855T:p.V285V	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	173937892	12A2p6	cell line	sgMsh2	173937892	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	138	0	0	NA	exonic	Ifi203	frameshift deletion	"Ifi203:NM_001302649:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302650:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302651:exon3:c.115delA:p.M39Cfs*23"	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr1	174041991	12A2p6	cell line	sgMsh2	174041991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	157	0	0	NA	exonic	Olfr433	nonsynonymous SNV	Olfr433:NM_146717:exon1:c.C40T:p.L14F	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	174137279	12A2p6	cell line	sgMsh2	174137279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	221	0	0	NA	exonic	Olfr424	synonymous SNV	Olfr424:NM_146721:exon1:c.C534T:p.F178F	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.02E-09	TCT	synonymous	NA	NA	NA	NA
SSC_p20	chr1	174158781	12A2p6	cell line	sgMsh2	174158781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	155	0	0	NA	exonic	Olfr420	nonsynonymous SNV	Olfr420:NM_146305:exon1:c.T7C:p.F3L	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	174212681	12A2p6	cell line	sgMsh2	174212681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	87	0	0	NA	exonic	Spta1	nonsynonymous SNV	Spta1:NM_011465:exon26:c.A3707G:p.K1236R	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9992844	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	174250193	12A2p6	cell line	sgMsh2	174250193	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	106	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.C733T:p.L245F	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.972969519	1	0.9999948	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	174448814	12A2p6	cell line	sgMsh2	174448814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	exonic	Olfr220	nonsynonymous SNV	Olfr220:NM_207694:exon1:c.A190G:p.M64V	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	174699594	12A2p6	cell line	sgMsh2	174699594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	122	0	0	NA	exonic	Fmn2	synonymous SNV	Fmn2:NM_019445:exon13:c.A4251G:p.E1417E	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	175153188	12A2p6	cell line	sgMsh2	175153188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	134	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon5:c.A269G:p.Y90C,Rgs7:NM_001347195:exon5:c.A269G:p.Y90C,Rgs7:NM_011880:exon5:c.A269G:p.Y90C"	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	175270894	12A2p6	cell line	sgMsh2	175270894	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	96	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon3:c.G98A:p.R33H,Rgs7:NM_001347195:exon3:c.G98A:p.R33H,Rgs7:NM_001357129:exon3:c.G98A:p.R33H,Rgs7:NM_011880:exon3:c.G98A:p.R33H"	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	175688141	12A2p6	cell line	sgMsh2	175688141	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	147	0	0	NA	exonic	Chml	synonymous SNV	Chml:NM_021350:exon1:c.C213T:p.G71G	1qH3	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	54	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	177050128	12A2p6	cell line	sgMsh2	177050128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	117	0	0	NA	exonic	Akt3	nonsynonymous SNV	Akt3:NM_011785:exon10:c.T1073C:p.I358T	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	177772194	12A2p6	cell line	sgMsh2	177772194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	84	0	0	NA	exonic	Adss	nonsynonymous SNV	Adss:NM_007422:exon9:c.A823G:p.T275A	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	GTA	nonsynonymous	ACAGT	10	ACAGTACAGT	NA
SSC_p20	chr1	178915747	12A2p6	cell line	sgMsh2	178915747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	202	0	0	NA	exonic	Kif26b	frameshift deletion	Kif26b:NM_001161665:exon12:c.3407delT:p.L1137fs*0	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	132	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.2527	91	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC_p20	chr1	181101591	12A2p6	cell line	sgMsh2	181101591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	71	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon19:c.A2224C:p.T742P	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	181135037	12A2p6	cell line	sgMsh2	181135037	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	120	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon6:c.C367T:p.L123F	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999961	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	181181474	12A2p6	cell line	sgMsh2	181181474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	63	0	0	NA	exonic	Wdr26	nonsynonymous SNV	Wdr26:NM_145514:exon13:c.T1730C:p.I577T	1qH4	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999021	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	185258555	12A2p6	cell line	sgMsh2	185258555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	116	0	0	NA	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon19:c.T1925C:p.L642P	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999991	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
SSC_p20	chr1	185323752	12A2p6	cell line	sgMsh2	185323752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	91	0	0	NA	exonic	Iars2	nonsynonymous SNV	Iars2:NM_198653:exon4:c.T614C:p.M205T	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999935	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	185356503	12A2p6	cell line	sgMsh2	185356503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	180	0	0	NA	exonic	Bpnt1	nonsynonymous SNV	"Bpnt1:NM_001347212:exon8:c.T639A:p.N213K,Bpnt1:NM_011794:exon9:c.T804A:p.N268K,Bpnt1:NM_001347210:exon10:c.T849A:p.N283K"	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.754788475	1	0.833402	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	185407592	12A2p6	cell line	sgMsh2	185407592	A	G	SNV	Mutect2;Vardict	2	0.045	116	0	0	NA	exonic	Eprs	synonymous SNV	"Eprs:NM_029735:exon20:c.A2877G:p.E959E,Eprs:NM_001357474:exon21:c.A2898G:p.E966E"	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.265355323	3	0.9986896	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr1	185428030	12A2p6	cell line	sgMsh2	185428030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	138	0	0	NA	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon32:c.G4422A:p.M1474I,Eprs:NM_001357474:exon33:c.G4443A:p.M1481I"	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TGG	nonsynonymous	TCCA	9	TCCATCCAT	NA
SSC_p20	chr1	185464395	12A2p6	cell line	sgMsh2	185464395	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	110	0	0	NA	exonic	Slc30a10	nonsynonymous SNV	Slc30a10:NM_001033286:exon4:c.A1253C:p.N418T	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	187192998	12A2p6	cell line	sgMsh2	187192998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	176	0	0	NA	exonic	Spata17	nonsynonymous SNV	"Spata17:NM_028848:exon3:c.A229G:p.I77V,Spata17:NM_029067:exon3:c.A229G:p.I77V"	1qH5	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.70E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	188443396	12A2p6	cell line	sgMsh2	188443396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	114	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon16:c.T3690C:p.P1230P	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr1	188537827	12A2p6	cell line	sgMsh2	188537827	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	218	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon25:c.C5270T:p.A1757V	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	188784788	12A2p6	cell line	sgMsh2	188784788	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	113	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon48:c.T9694A:p.Y3232N	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	189339813	12A2p6	cell line	sgMsh2	189339813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	100	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon2:c.A329G:p.N110S,Kcnk2:NM_001281847:exon2:c.A293G:p.N98S,Kcnk2:NM_010607:exon2:c.A284G:p.N95S"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	189850865	12A2p6	cell line	sgMsh2	189850865	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	43	0	0	NA	exonic	Ptpn14	synonymous SNV	Ptpn14:NM_008976:exon13:c.C1908T:p.G636G	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	1	0.7551392	GCG	synonymous	GGC	11	GGCGGCGGCGG	NA
SSC_p20	chr1	190123278	12A2p6	cell line	sgMsh2	190123278	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	101	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon5:c.G2156T:p.S719I,Prox1:NM_008937:exon5:c.G2156T:p.S719I"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	190161612	12A2p6	cell line	sgMsh2	190161612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	146	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon2:c.A635G:p.K212R,Prox1:NM_008937:exon2:c.A635G:p.K212R"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2759	116	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
SSC_p20	chr1	192128022	12A2p6	cell line	sgMsh2	192128022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	124	0	0	NA	exonic	Rcor3	nonsynonymous SNV	"Rcor3:NM_001290278:exon4:c.A302G:p.E101G,Rcor3:NM_001290279:exon4:c.A302G:p.E101G,Rcor3:NM_001290280:exon4:c.A302G:p.E101G,Rcor3:NM_001346740:exon4:c.A302G:p.E101G,Rcor3:NM_144814:exon4:c.A302G:p.E101G"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	97	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	192847134	12A2p6	cell line	sgMsh2	192847134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	124	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.T373C:p.Y125H,Sertad4:NM_198247:exon4:c.T373C:p.Y125H"	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr1	194644882	12A2p6	cell line	sgMsh2	194644882	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.234	66	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon2:c.T1123C:p.Y375H	1qH6	chr1-138846850-195166209	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999268	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	3540451	12A2p6	cell line	sgMsh2	3540451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	53	0	0	NA	exonic	Iyd	synonymous SNV	Iyd:NM_027391:exon1:c.A156G:p.Q52Q	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999742	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	5228100	12A2p6	cell line	sgMsh2	5228100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	73	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.A14394C:p.K4798N,Syne1:NM_001347732:exon77:c.A14373C:p.K4791N"	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	5259244	12A2p6	cell line	sgMsh2	5259244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	76	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon63:c.G10279A:p.A3427T,Syne1:NM_001347732:exon63:c.G10258A:p.A3420T"	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	5805268	12A2p6	cell line	sgMsh2	5805268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	25	0	0	NA	exonic	Fbxo5	nonsynonymous SNV	Fbxo5:NM_025995:exon1:c.A70G:p.T24A	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9961145	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	6956090	12A2p6	cell line	sgMsh2	6956090	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	89	0	0	NA	exonic	Ipcef1	nonsynonymous SNV	"Ipcef1:NM_001033391:exon3:c.G61A:p.V21M,Ipcef1:NM_001170800:exon3:c.G202A:p.V68M,Ipcef1:NM_001170801:exon3:c.G202A:p.V68M,Ipcef1:NM_001170802:exon3:c.G202A:p.V68M,Ipcef1:NM_001347225:exon3:c.G202A:p.V68M"	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	11290372	12A2p6	cell line	sgMsh2	11290372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	162	0	0	NA	exonic	Fbxo30	synonymous SNV	"Fbxo30:NM_001168297:exon2:c.T837C:p.S279S,Fbxo30:NM_027968:exon2:c.T837C:p.S279S"	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	11290755	12A2p6	cell line	sgMsh2	11290755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	162	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.T1220C:p.V407A,Fbxo30:NM_027968:exon2:c.T1220C:p.V407A"	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	7.62E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	12413993	12A2p6	cell line	sgMsh2	12413993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	49	0	0	NA	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon68:c.A9602G:p.Q3201R	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	12686428	12A2p6	cell line	sgMsh2	12686428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	28	0	0	NA	exonic	Utrn	synonymous SNV	Utrn:NM_011682:exon28:c.A3876G:p.E1292E	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9970925	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	12745284	12A2p6	cell line	sgMsh2	12745284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	143	0	0	NA	exonic	Utrn	synonymous SNV	Utrn:NM_011682:exon7:c.T642C:p.A214A	10qA1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.28E-08	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	17915302	12A2p6	cell line	sgMsh2	17915302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	154	0	0	NA	exonic	Heca	synonymous SNV	Heca:NM_001033432:exon2:c.A1005G:p.A335A	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.54E-08	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	18523873	12A2p6	cell line	sgMsh2	18523873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	120	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.T756C:p.D252D,Nhsl1:NM_001163592:exon6:c.T744C:p.D248D"	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	19849139	12A2p6	cell line	sgMsh2	19849139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	94	0	0	NA	exonic	Slc35d3	stopgain	Slc35d3:NM_029529:exon2:c.C970T:p.Q324X	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	19849510	12A2p6	cell line	sgMsh2	19849510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	52	0	0	NA	exonic	Slc35d3	nonsynonymous SNV	Slc35d3:NM_029529:exon2:c.T599C:p.L200P	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	75	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	21139393	12A2p6	cell line	sgMsh2	21139393	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	48	0	0	NA	exonic	Myb	nonsynonymous SNV	"Myb:NM_010848:exon14:c.T1694G:p.L565R,Myb:NM_001198914:exon15:c.T2051G:p.L684R"	10qA3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	27	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9967974	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	24660255	12A2p6	cell line	sgMsh2	24660255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	132	0	0	NA	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon13:c.T1246C:p.Y416H,Enpp1:NM_001308329:exon13:c.T190C:p.Y64H,Enpp1:NM_008813:exon13:c.T1246C:p.Y416H"	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	73	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	26336234	12A2p6	cell line	sgMsh2	26336234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	75	0	0	NA	exonic	L3mbtl3	nonsynonymous SNV	"L3mbtl3:NM_001347467:exon8:c.A788T:p.E263V,L3mbtl3:NM_001359254:exon9:c.A863T:p.E288V,L3mbtl3:NM_001359255:exon9:c.A635T:p.E212V,L3mbtl3:NM_172787:exon9:c.A863T:p.E288V"	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	28782135	12A2p6	cell line	sgMsh2	28782135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	107	0	0	NA	exonic	Themis	nonsynonymous SNV	"Themis:NM_001374699:exon4:c.T1157C:p.V386A,Themis:NM_178666:exon4:c.T1157C:p.V386A,Themis:NM_001305663:exon5:c.T890C:p.V297A"	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	28782219	12A2p6	cell line	sgMsh2	28782219	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	94	0	0	NA	exonic	Themis	frameshift deletion	"Themis:NM_001374699:exon4:c.1241delA:p.V416Sfs*19,Themis:NM_178666:exon4:c.1241delA:p.V416Sfs*18,Themis:NM_001305663:exon5:c.974delA:p.V327Sfs*19"	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr10	29150332	12A2p6	cell line	sgMsh2	29150332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	91	0	0	NA	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon4:c.T1409C:p.L470P	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	31320314	12A2p6	cell line	sgMsh2	31320314	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	126	0	0	NA	exonic	Hddc2	nonsynonymous SNV	Hddc2:NM_027168:exon4:c.A341C:p.K114T	10qA4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
SSC_p20	chr10	34044091	12A2p6	cell line	sgMsh2	34044091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	exonic	Calhm4	nonsynonymous SNV	Calhm4:NM_001081165:exon1:c.C179T:p.A60V	10qB1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	34313632	12A2p6	cell line	sgMsh2	34313632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	70	0	0	NA	exonic	Nt5dc1	nonsynonymous SNV	"Nt5dc1:NM_001347463:exon9:c.A386G:p.K129R,Nt5dc1:NM_176968:exon10:c.A1061G:p.K354R"	10qB1	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999504	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	38	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9988956	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	42197496	12A2p6	cell line	sgMsh2	42197496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	28	0	0	NA	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon3:c.C1024T:p.L342L,Foxo3:NM_019740:exon3:c.C1024T:p.L342L"	10qB2	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9970925	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	45125980	12A2p6	cell line	sgMsh2	45125980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	145	0	0	NA	exonic	Prep	synonymous SNV	Prep:NM_011156:exon10:c.C1230T:p.C410C	10qB2	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	45153135	12A2p6	cell line	sgMsh2	45153135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	59	0	0	NA	exonic	Prep	nonsynonymous SNV	Prep:NM_011156:exon13:c.T1630C:p.S544P	10qB2	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	133	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	52027972	12A2p6	cell line	sgMsh2	52027972	C	T	SNV	Mutect2;Vardict	2	0.4	8	0	0	NA	exonic	Vgll2	synonymous SNV	"Vgll2:NM_001300957:exon3:c.C927T:p.L309L,Vgll2:NM_153786:exon3:c.C930T:p.L310L"	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9797701	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr10	52155111	12A2p6	cell line	sgMsh2	52155111	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	48	0	0	NA	exonic	Ros1	nonsynonymous SNV	Ros1:NM_011282:exon13:c.T1460C:p.F487S	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999581	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	53343900	12A2p6	cell line	sgMsh2	53343900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	85	0	0	NA	exonic	Pln	nonsynonymous SNV	"Pln:NM_023129:exon2:c.A37G:p.R13G,Pln:NM_001141927:exon3:c.A37G:p.R13G"	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	53349103	12A2p6	cell line	sgMsh2	53349103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	84	0	0	NA	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon3:c.T389C:p.M130T	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	56049781	12A2p6	cell line	sgMsh2	56049781	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	168	0	0	NA	exonic	Tbc1d32	frameshift deletion	Tbc1d32:NM_001033385:exon29:c.3267delA:p.P1090Rfs*24	10qB3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
SSC_p20	chr10	58457650	12A2p6	cell line	sgMsh2	58457650	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	104	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon7:c.G841T:p.A281S	10qB4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	59448817	12A2p6	cell line	sgMsh2	59448817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	103	0	0	NA	exonic	Mcu	synonymous SNV	Mcu:NM_001033259:exon8:c.A1017G:p.V339V	10qB4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	62966742	12A2p6	cell line	sgMsh2	62966742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	0	0	NA	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon17:c.A2638G:p.S880G	10qB4	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	68097065	12A2p6	cell line	sgMsh2	68097065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.C3006A:p.S1002R	10qB5.2	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999975	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	70283983	12A2p6	cell line	sgMsh2	70283983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	111	0	0	NA	exonic	Slc16a9	synonymous SNV	Slc16a9:NM_025807:exon6:c.T1455C:p.D485D	10qB5.3	chr10-3120209-74642645	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999991	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	75125037	12A2p6	cell line	sgMsh2	75125037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	130	0	0	NA	exonic	Bcr	synonymous SNV	Bcr:NM_001081412:exon2:c.A1299T:p.G433G	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GAA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	75642257	12A2p6	cell line	sgMsh2	75642257	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.393	81	0	0	NA	exonic	Susd2	frameshift deletion	Susd2:NM_027890:exon3:c.298delA:p.T100Pfs*42	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr10	75784155	12A2p6	cell line	sgMsh2	75784155	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	0	0	NA	exonic	Gstt1	nonsynonymous SNV	"Gstt1:NM_001358778:exon5:c.G457A:p.G153R,Gstt1:NM_008185:exon5:c.G607A:p.G203R"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	76182818	12A2p6	cell line	sgMsh2	76182818	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.078	78	0	0	NA	exonic	Slc5a4a	frameshift deletion	Slc5a4a:NM_133184:exon13:c.1598delT:p.F535Sfs*12	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.459949227	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr10	76605074	12A2p6	cell line	sgMsh2	76605074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	59	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon22:c.A1765G:p.I589V,Col6a2:NM_146007:exon22:c.A1765G:p.I589V"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	76613271	12A2p6	cell line	sgMsh2	76613271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	149	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon5:c.G830A:p.G277D,Col6a2:NM_146007:exon5:c.G830A:p.G277D"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.44E-08	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	76721494	12A2p6	cell line	sgMsh2	76721494	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	200	0	0	NA	exonic	Col6a1	nonsynonymous SNV	Col6a1:NM_009933:exon5:c.A623G:p.Y208C	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.318426388	3	0.9859317	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	69	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	78202959	12A2p6	cell line	sgMsh2	78202959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	51	0	0	NA	exonic	Trappc10	synonymous SNV	Trappc10:NM_001081055:exon15:c.T2298C:p.F766F	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996867	CAA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	120	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	79739630	12A2p6	cell line	sgMsh2	79739630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	52	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon10:c.T2066C:p.L689P	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	79743534	12A2p6	cell line	sgMsh2	79743534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	119	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon3:c.A382G:p.T128A	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	80011990	12A2p6	cell line	sgMsh2	80011990	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.365	65	0	0	NA	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon39:c.5421delG:p.A1809Lfs*6,Abca7:NM_013850:exon39:c.5397delG:p.A1801Lfs*6"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr10	80020721	12A2p6	cell line	sgMsh2	80020721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	74	0	0	NA	exonic	Arhgap45	synonymous SNV	"Arhgap45:NM_027521:exon2:c.T102C:p.H34H,Arhgap45:NM_001142701:exon3:c.T450C:p.H150H,Arhgap45:NM_001347074:exon3:c.T483C:p.H161H"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	80274827	12A2p6	cell line	sgMsh2	80274827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	39	0	0	NA	exonic	Dazap1	synonymous SNV	"Dazap1:NM_001122604:exon4:c.T261G:p.P87P,Dazap1:NM_001122605:exon4:c.T261G:p.P87P,Dazap1:NM_001378995:exon4:c.T261G:p.P87P,Dazap1:NM_133188:exon4:c.T261G:p.P87P"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9989976	CTC	synonymous	G	5	GGGGG	NA
SSC_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	56	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	CGC	synonymous	GCTG	8	GCTGGCTG	NA
SSC_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	47	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	23	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9952866	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	80326183	12A2p6	cell line	sgMsh2	80326183	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	83	0	0	NA	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon3:c.T355A:p.W119R	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	12	0	0	NA	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9863861	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	146	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	80905207	12A2p6	cell line	sgMsh2	80905207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	34	0	0	NA	exonic	Lmnb2	nonsynonymous SNV	"Lmnb2:NM_001347140:exon2:c.G297T:p.E99D,Lmnb2:NM_010722:exon5:c.G720T:p.E240D"	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9983731	CCT	nonsynonymous	TCCACC	12	TCCACCTCCACC	NA
SSC_p20	chr10	81212521	12A2p6	cell line	sgMsh2	81212521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	122	0	0	NA	exonic	Atcay	nonsynonymous SNV	Atcay:NM_178662:exon7:c.A730G:p.M244V	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	ATC	nonsynonymous	TCC	9	TCCTCCTCC	NA
SSC_p20	chr10	81245446	12A2p6	cell line	sgMsh2	81245446	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	34	0	0	NA	exonic	Zfr2	nonsynonymous SNV	Zfr2:NM_001034895:exon9:c.C1329A:p.S443R	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.518917077	2	0.008051126	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	81271396	12A2p6	cell line	sgMsh2	81271396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	70	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon6:c.T872C:p.I291T	10qC1	chr10-74643062-81649427	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	83506667	12A2p6	cell line	sgMsh2	83506667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	78	0	0	NA	exonic	Aldh1l2	synonymous SNV	Aldh1l2:NM_153543:exon13:c.T1617C:p.A539A	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999772	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	83591052	12A2p6	cell line	sgMsh2	83591052	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	90	0	0	NA	exonic	Washc4	nonsynonymous SNV	Washc4:NM_001033375:exon31:c.T3223A:p.S1075T	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	84528116	12A2p6	cell line	sgMsh2	84528116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	63	0	0	NA	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A1082G:p.K361R	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999021	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	84656068	12A2p6	cell line	sgMsh2	84656068	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	153	0	0	NA	exonic	Polr3b	nonsynonymous SNV	Polr3b:NM_027423:exon12:c.T1090A:p.L364M	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.68E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	86701955	12A2p6	cell line	sgMsh2	86701955	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	94	0	0	NA	exonic	Hsp90b1	frameshift deletion	Hsp90b1:NM_011631:exon5:c.485delA:p.N162Ifs*4	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr10	86719641	12A2p6	cell line	sgMsh2	86719641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	126	0	0	NA	exonic	Ttc41	synonymous SNV	"Ttc41:NM_153595:exon2:c.T960C:p.G320G,Ttc41:NM_001003910:exon3:c.T960C:p.G320G,Ttc41:NM_001003939:exon4:c.T960C:p.G320G"	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	86850611	12A2p6	cell line	sgMsh2	86850611	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	121	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon63:c.T6954A:p.N2318K	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	87225881	12A2p6	cell line	sgMsh2	87225881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	113	0	0	NA	exonic	1700113H08Rik	synonymous SNV	1700113H08Rik:NM_029685:exon5:c.T192C:p.S64S	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr10	87913683	12A2p6	cell line	sgMsh2	87913683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	140	0	0	NA	exonic	Igf1	synonymous SNV	"Igf1:NM_001111274:exon3:c.T237C:p.C79C,Igf1:NM_001111275:exon3:c.T285C:p.C95C,Igf1:NM_001111276:exon3:c.T237C:p.C79C,Igf1:NM_010512:exon3:c.T285C:p.C95C,Igf1:NM_001314010:exon4:c.T285C:p.C95C"	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	88160925	12A2p6	cell line	sgMsh2	88160925	A	C	SNV	Mutect2;Vardict	2	0.245	135	0	0	NA	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon5:c.A404C:p.K135T,Nup37:NM_028334:exon5:c.A404C:p.K135T"	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	88536393	12A2p6	cell line	sgMsh2	88536393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	51	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon20:c.C2332T:p.R778C,Mybpc1:NM_175418:exon21:c.C2374T:p.R792C"	10qC1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996867	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	97517618	12A2p6	cell line	sgMsh2	97517618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	133	0	0	NA	exonic	Dcn	nonsynonymous SNV	"Dcn:NM_001190451:exon8:c.A1028T:p.Y343F,Dcn:NM_007833:exon8:c.A1028T:p.Y343F"	10qC3	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	102482413	12A2p6	cell line	sgMsh2	102482413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	0	0	NA	exonic	Nts	nonsynonymous SNV	Nts:NM_024435:exon4:c.T428C:p.I143T	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GAT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr10	105823174	12A2p6	cell line	sgMsh2	105823174	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.35	79	0	0	NA	exonic	Mettl25	frameshift deletion	"Mettl25:NM_207522:exon5:c.1247delA:p.N416Tfs*19,Mettl25:NM_001359640:exon6:c.812delA:p.N271Tfs*19,Mettl25:NM_001359642:exon6:c.812delA:p.N271Tfs*19"	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr10	106893471	12A2p6	cell line	sgMsh2	106893471	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.407	67	0	0	NA	exonic	Ppfia2	frameshift deletion	"Ppfia2:NM_001359679:exon20:c.2472delT:p.F825Lfs*30,Ppfia2:NM_001359683:exon20:c.2460delT:p.F821Lfs*30,Ppfia2:NM_001359684:exon20:c.2457delT:p.F820Lfs*30,Ppfia2:NM_001359685:exon20:c.2472delT:p.F825Lfs*30,Ppfia2:NM_001359690:exon20:c.2457delT:p.F820Lfs*30,Ppfia2:NM_001359691:exon20:c.2460delT:p.F821Lfs*30,Ppfia2:NM_001359692:exon20:c.2472delT:p.F825Lfs*29,Ppfia2:NM_001359694:exon20:c.2460delT:p.F821Lfs*29,Ppfia2:NM_001359695:exon20:c.2457delT:p.F820Lfs*29,Ppfia2:NM_001359697:exon20:c.2460delT:p.F821Lfs*29,Ppfia2:NM_001359698:exon20:c.2457delT:p.F820Lfs*29,Ppfia2:NM_001359677:exon21:c.2481delT:p.F828Lfs*30,Ppfia2:NM_001359678:exon21:c.2478delT:p.F827Lfs*30,Ppfia2:NM_001359680:exon21:c.2469delT:p.F824Lfs*30,Ppfia2:NM_001359681:exon21:c.2466delT:p.F823Lfs*30,Ppfia2:NM_001359682:exon21:c.2481delT:p.F828Lfs*30,Ppfia2:NM_001359686:exon21:c.2469delT:p.F824Lfs*30,Ppfia2:NM_001359687:exon21:c.2481delT:p.F828Lfs*29,Ppfia2:NM_001359688:exon21:c.2466delT:p.F823Lfs*30,Ppfia2:NM_001359689:exon21:c.2469delT:p.F824Lfs*29,Ppfia2:NM_001359693:exon21:c.2466delT:p.F823Lfs*29,Ppfia2:NM_001359696:exon21:c.2466delT:p.F823Lfs*29,Ppfia2:NM_001205341:exon22:c.2682delT:p.F895Lfs*30,Ppfia2:NM_001359672:exon22:c.2691delT:p.F898Lfs*30,Ppfia2:NM_001359673:exon22:c.2682delT:p.F895Lfs*30,Ppfia2:NM_001359674:exon22:c.2679delT:p.F894Lfs*29,Ppfia2:NM_001359675:exon22:c.2682delT:p.F895Lfs*29,Ppfia2:NM_001359676:exon22:c.2679delT:p.F894Lfs*29,Ppfia2:NM_177373:exon22:c.2679delT:p.F894Lfs*30"	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr10	108690913	12A2p6	cell line	sgMsh2	108690913	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	71	0	0	NA	exonic	Syt1	nonsynonymous SNV	"Syt1:NM_001252342:exon4:c.A134T:p.K45M,Syt1:NM_001358501:exon4:c.A134T:p.K45M,Syt1:NM_001358503:exon4:c.A134T:p.K45M,Syt1:NM_009306:exon4:c.A134T:p.K45M,Syt1:NM_001252341:exon5:c.A134T:p.K45M,Syt1:NM_001358504:exon5:c.A134T:p.K45M,Syt1:NM_001358506:exon5:c.A134T:p.K45M,Syt1:NM_001358502:exon6:c.A134T:p.K45M"	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	109707907	12A2p6	cell line	sgMsh2	109707907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	80	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001368815:exon29:c.A5665G:p.S1889G,Nav3:NM_001081035:exon30:c.A5686G:p.S1896G"	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	109764975	12A2p6	cell line	sgMsh2	109764975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	35	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon16:c.G3790A:p.A1264T,Nav3:NM_001368815:exon16:c.G3790A:p.A1264T"	10qD1	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9985232	GCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	110	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999999	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	117671739	12A2p6	cell line	sgMsh2	117671739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	99	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon6:c.A760G:p.N254D	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	117690486	12A2p6	cell line	sgMsh2	117690486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	177	0	0	NA	exonic	Mdm2	synonymous SNV	"Mdm2:NM_001288586:exon11:c.T1047G:p.T349T,Mdm2:NM_010786:exon12:c.T1194G:p.T398T"	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.55E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	55	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997874	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
SSC_p20	chr10	121596189	12A2p6	cell line	sgMsh2	121596189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	67	0	0	NA	exonic	Xpot	nonsynonymous SNV	"Xpot:NM_001081056:exon23:c.A2800G:p.I934V,Xpot:NM_001359618:exon23:c.A2800G:p.I934V"	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	122081458	12A2p6	cell line	sgMsh2	122081458	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.351	37	0	0	NA	exonic	Rxylt1	frameshift deletion	"Rxylt1:NM_153059:exon6:c.1149delC:p.F384Sfs*13,Rxylt1:NM_001364706:exon7:c.585delC:p.F196Sfs*13"	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	GATGAA	13	GATGAAGATGAAG	-1
SSC_p20	chr10	122096942	12A2p6	cell line	sgMsh2	122096942	T	C	SNV	Mutect2;Vardict	2	0.625	7	0	0	NA	exonic	Rxylt1	nonsynonymous SNV	Rxylt1:NM_153059:exon1:c.A130G:p.R44G	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9775345	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	123127812	12A2p6	cell line	sgMsh2	123127812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	86	0	0	NA	exonic	Usp15	synonymous SNV	"Usp15:NM_001301628:exon13:c.C1623T:p.C541C,Usp15:NM_027604:exon14:c.C1710T:p.C570C"	10qD2	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr10	125996729	12A2p6	cell line	sgMsh2	125996729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	80	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon6:c.T774C:p.A258A	10qD3	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	CTT	synonymous	T	5	TTTTT	NA
SSC_p20	chr10	126008573	12A2p6	cell line	sgMsh2	126008573	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon14:c.C1905A:p.A635A	10qD3	chr10-81811943-126868997	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	45	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9994396	CCG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	127236107	12A2p6	cell line	sgMsh2	127236107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	62	0	0	NA	exonic	Kif5a	synonymous SNV	"Kif5a:NM_001039000:exon20:c.T2247C:p.Y749Y,Kif5a:NM_008447:exon20:c.T2247C:p.Y749Y"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	127283710	12A2p6	cell line	sgMsh2	127283710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	54	0	0	NA	exonic	Mbd6	nonsynonymous SNV	"Mbd6:NM_001347171:exon10:c.A2636G:p.K879R,Mbd6:NM_001379570:exon10:c.A2639G:p.K880R,Mbd6:NM_001379571:exon10:c.A2639G:p.K880R,Mbd6:NM_033072:exon10:c.A2642G:p.K881R"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	127462204	12A2p6	cell line	sgMsh2	127462204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	76	0	0	NA	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001359243:exon10:c.A827G:p.Q276R,R3hdm2:NM_001359246:exon10:c.A827G:p.Q276R,R3hdm2:NM_001168292:exon11:c.A827G:p.Q276R"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	127471882	12A2p6	cell line	sgMsh2	127471882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	41	0	0	NA	exonic	R3hdm2	synonymous SNV	"R3hdm2:NM_001168293:exon12:c.C1011T:p.V337V,R3hdm2:NM_001359245:exon12:c.C1011T:p.V337V,R3hdm2:NM_001359246:exon12:c.C1053T:p.V351V,R3hdm2:NM_027900:exon12:c.C1011T:p.V337V,R3hdm2:NM_001359243:exon13:c.C1107T:p.V369V,R3hdm2:NM_001168292:exon14:c.C1107T:p.V369V,R3hdm2:NM_001359244:exon14:c.C1011T:p.V337V"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9991742	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr10	127498509	12A2p6	cell line	sgMsh2	127498509	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	48	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359245:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359246:exon24:c.2881delG:p.D963Tfs*19,R3hdm2:NM_027900:exon24:c.2800delG:p.D936Tfs*19,R3hdm2:NM_001359243:exon25:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001168292:exon26:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001359244:exon26:c.2839delG:p.D949Tfs*19"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr10	127692992	12A2p6	cell line	sgMsh2	127692992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	150	0	0	NA	exonic	Nemp1	synonymous SNV	"Nemp1:NM_001113211:exon5:c.T564C:p.T188T,Nemp1:NM_173732:exon5:c.T564C:p.T188T"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	128291234	12A2p6	cell line	sgMsh2	128291234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	135	0	0	NA	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon24:c.G2630T:p.S877I	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	128634570	12A2p6	cell line	sgMsh2	128634570	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	54	0	0	NA	exonic	Ikzf4	synonymous SNV	"Ikzf4:NM_001358537:exon8:c.A1074C:p.R358R,Ikzf4:NM_011772:exon8:c.A1239C:p.R413R,Ikzf4:NM_001358536:exon9:c.A1074C:p.R358R"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr10	128699547	12A2p6	cell line	sgMsh2	128699547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	114	0	0	NA	exonic	Cdk2	synonymous SNV	"Cdk2:NM_016756:exon6:c.T717C:p.S239S,Cdk2:NM_183417:exon7:c.T861C:p.S287S"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr10	128816794	12A2p6	cell line	sgMsh2	128816794	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	90	0	0	NA	exonic	Dnajc14	nonsynonymous SNV	"Dnajc14:NM_001359824:exon5:c.T1720C:p.F574L,Dnajc14:NM_001359825:exon5:c.T1720C:p.F574L,Dnajc14:NM_028873:exon5:c.T1720C:p.F574L"	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.412774947	2	0.9860952	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	129238632	12A2p6	cell line	sgMsh2	129238632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	309	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T482G:p.F161C	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	129437268	12A2p6	cell line	sgMsh2	129437268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	210	0	0	NA	exonic	Olfr786	nonsynonymous SNV	Olfr786:NM_146549:exon1:c.T455C:p.L152P	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.06E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	129501642	12A2p6	cell line	sgMsh2	129501642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	107	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.G757A:p.V253I	10qD3	chr10-126887223-129526639	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	129607790	12A2p6	cell line	sgMsh2	129607790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	126	0	0	NA	exonic	Olfr796	synonymous SNV	Olfr796:NM_146931:exon1:c.T690G:p.A230A	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	129625486	12A2p6	cell line	sgMsh2	129625486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	236	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T574G:p.F192V	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr10	129670245	12A2p6	cell line	sgMsh2	129670245	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	267	0	0	NA	exonic	Olfr801	synonymous SNV	Olfr801:NM_146285:exon1:c.C273A:p.S91S	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	141	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.A763T:p.M255L	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr10	129754909	12A2p6	cell line	sgMsh2	129754909	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	151	0	0	NA	exonic	Olfr807	frameshift deletion	Olfr807:NM_146929:exon1:c.540delC:p.I181Sfs*1	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr10	130112476	12A2p6	cell line	sgMsh2	130112476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	177	0	0	NA	exonic	Olfr823	nonsynonymous SNV	Olfr823:NM_146673:exon1:c.T313C:p.F105L	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	AAAGAA	12	AAAGAAAAAGAA	NA
SSC_p20	chr10	130270579	12A2p6	cell line	sgMsh2	130270579	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	91	0	0	NA	exonic	Neurod4	synonymous SNV	"Neurod4:NM_001329489:exon2:c.C825A:p.S275S,Neurod4:NM_001329490:exon2:c.C825A:p.S275S,Neurod4:NM_007501:exon2:c.C825A:p.S275S"	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGG	synonymous	T	5	TTTTT	NA
SSC_p20	chr10	130446820	12A2p6	cell line	sgMsh2	130446820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	576	0	0	NA	exonic	Vmn2r86	synonymous SNV	Vmn2r86:NM_001103365:exon6:c.T1926C:p.H642H	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	556	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr11	3262663	12A2p6	cell line	sgMsh2	3262663	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	83	0	0	NA	exonic	Drg1	synonymous SNV	Drg1:NM_007879:exon3:c.T168G:p.G56G	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	3291041	12A2p6	cell line	sgMsh2	3291041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	174	0	0	NA	exonic	Patz1	nonsynonymous SNV	"Patz1:NM_001253690:exon1:c.T428A:p.L143Q,Patz1:NM_001253691:exon1:c.T428A:p.L143Q,Patz1:NM_019574:exon1:c.T428A:p.L143Q"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	3291698	12A2p6	cell line	sgMsh2	3291698	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	133	0	0	NA	exonic	Patz1	nonsynonymous SNV	"Patz1:NM_001253690:exon1:c.A1085C:p.K362T,Patz1:NM_001253691:exon1:c.A1085C:p.K362T,Patz1:NM_019574:exon1:c.A1085C:p.K362T"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9999189	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	3494816	12A2p6	cell line	sgMsh2	3494816	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	34	0	0	NA	exonic	Inpp5j	synonymous SNV	Inpp5j:NM_172439:exon13:c.T2856C:p.P952P	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9983731	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	81	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	3976369	12A2p6	cell line	sgMsh2	3976369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	135	0	0	NA	exonic	Pes1	nonsynonymous SNV	Pes1:NM_022889:exon10:c.T991C:p.F331L	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	4146243	12A2p6	cell line	sgMsh2	4146243	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.4	19	0	0	NA	exonic	Ccdc157	frameshift deletion	"Ccdc157:NM_001164620:exon9:c.1672delC:p.Q558Rfs*36,Ccdc157:NM_177616:exon10:c.1366delC:p.Q456Rfs*36"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
SSC_p20	chr11	4213593	12A2p6	cell line	sgMsh2	4213593	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	107	0	0	NA	exonic	Tbc1d10a	synonymous SNV	Tbc1d10a:NM_134023:exon7:c.C742T:p.L248L	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.513471	ACT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	4215006	12A2p6	cell line	sgMsh2	4215006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	65	0	0	NA	exonic	Tbc1d10a	synonymous SNV	Tbc1d10a:NM_134023:exon9:c.A1356G:p.T452T	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	4816104	12A2p6	cell line	sgMsh2	4816104	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	177	0	0	NA	exonic	Nf2	nonsynonymous SNV	"Nf2:NM_001361675:exon3:c.C302T:p.A101V,Nf2:NM_001361676:exon3:c.C302T:p.A101V,Nf2:NM_001252250:exon4:c.C425T:p.A142V,Nf2:NM_001252251:exon4:c.C425T:p.A142V,Nf2:NM_001252252:exon4:c.C425T:p.A142V,Nf2:NM_001252253:exon4:c.C311T:p.A104V,Nf2:NM_001361677:exon4:c.C425T:p.A142V,Nf2:NM_010898:exon4:c.C425T:p.A142V"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.55E-09	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	5282073	12A2p6	cell line	sgMsh2	5282073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	95	0	0	NA	exonic	Znrf3	nonsynonymous SNV	"Znrf3:NM_001080924:exon8:c.A1439G:p.E480G,Znrf3:NM_001290501:exon9:c.A1151G:p.E384G"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.566091356	2	0.995413	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	6402416	12A2p6	cell line	sgMsh2	6402416	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	127	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.C1774A:p.L592M,Zmiz2:NM_028601:exon14:c.C1870A:p.L624M"	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	6598026	12A2p6	cell line	sgMsh2	6598026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	138	0	0	NA	exonic	Nacad	synonymous SNV	Nacad:NM_001081652:exon7:c.T4479C:p.S1493S	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	7139118	12A2p6	cell line	sgMsh2	7139118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	90	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon8:c.A1531G:p.M511V	11qA1	chr11-3133045-9061525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	9273928	12A2p6	cell line	sgMsh2	9273928	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	182	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon11:c.T1306A:p.S436T	11qA1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.95E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	9567801	12A2p6	cell line	sgMsh2	9567801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	107	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon50:c.C13402A:p.L4468I	11qA1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	9622002	12A2p6	cell line	sgMsh2	9622002	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	49	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon57:c.A14562T:p.L4854F	11qA1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996197	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	14599478	12A2p6	cell line	sgMsh2	14599478	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	112	0	0	NA	exonic	Pom121l12	synonymous SNV	Pom121l12:NM_001164166:exon1:c.C183A:p.T61T	11qA2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CCC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	115	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	22137982	12A2p6	cell line	sgMsh2	22137982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	0	0	NA	exonic	Ehbp1	synonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1176G:p.E392E,Ehbp1:NM_153078:exon11:c.A1101G:p.E367E"	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	22138040	12A2p6	cell line	sgMsh2	22138040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	96	0	0	NA	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1118G:p.E373G,Ehbp1:NM_153078:exon11:c.A1043G:p.E348G"	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	23333806	12A2p6	cell line	sgMsh2	23333806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	91	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon3:c.A499G:p.I167V	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9995297	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	24085488	12A2p6	cell line	sgMsh2	24085488	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	107	0	0	NA	exonic	Bcl11a	nonsynonymous SNV	"Bcl11a:NM_001159289:exon2:c.C223A:p.L75I,Bcl11a:NM_001159290:exon2:c.C67A:p.L23I,Bcl11a:NM_001242934:exon2:c.C223A:p.L75I,Bcl11a:NM_016707:exon2:c.C223A:p.L75I"	11qA3.2	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	26483301	12A2p6	cell line	sgMsh2	26483301	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	0	0	NA	exonic	Vrk2	nonsynonymous SNV	"Vrk2:NM_001252447:exon11:c.T880A:p.Y294N,Vrk2:NM_027260:exon11:c.T880A:p.Y294N"	11qA3.3	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	TAC	nonsynonymous	ACAT	8	ACATACAT	NA
SSC_p20	chr11	28910630	12A2p6	cell line	sgMsh2	28910630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	94	0	0	NA	exonic	Efemp1	nonsynonymous SNV	Efemp1:NM_146015:exon5:c.G538T:p.G180W	11qA3.3	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	29463489	12A2p6	cell line	sgMsh2	29463489	A	-	Deletion	Mutect2;Vardict	2	0.101	88	0	0	NA	exonic	Ccdc88a	frameshift deletion	"Ccdc88a:NM_001363368:exon15:c.2026delA:p.T678Lfs*11,Ccdc88a:NM_001363369:exon15:c.2026delA:p.T678Lfs*11,Ccdc88a:NM_176841:exon15:c.2026delA:p.T678Lfs*10"	11qA3.3	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.595575281	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr11	29736364	12A2p6	cell line	sgMsh2	29736364	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	160	0	0	NA	exonic	Rtn4	nonsynonymous SNV	"Rtn4:NM_024226:exon3:c.T247G:p.Y83D,Rtn4:NM_194052:exon3:c.T718G:p.Y240D,Rtn4:NM_194053:exon4:c.T775G:p.Y259D,Rtn4:NM_194051:exon5:c.T2788G:p.Y930D,Rtn4:NM_194054:exon5:c.T3136G:p.Y1046D"	11qA3.3	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	9.04E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	30454689	12A2p6	cell line	sgMsh2	30454689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	128	0	0	NA	exonic	4930505A04Rik	synonymous SNV	4930505A04Rik:NM_001100394:exon2:c.T213C:p.N71N	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	30845277	12A2p6	cell line	sgMsh2	30845277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	exonic	Psme4	synonymous SNV	Psme4:NM_134013:exon33:c.A3786G:p.E1262E	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.71E-08	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	30845305	12A2p6	cell line	sgMsh2	30845305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	146	0	0	NA	exonic	Psme4	nonsynonymous SNV	Psme4:NM_134013:exon33:c.A3814C:p.T1272P	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	AAC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr11	30891948	12A2p6	cell line	sgMsh2	30891948	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	243	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.A852C:p.Q284H	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	224	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.02E-09	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	92	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	34809820	12A2p6	cell line	sgMsh2	34809820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	54	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon12:c.C1702T:p.P568S	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997658	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	34825436	12A2p6	cell line	sgMsh2	34825436	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	111	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon3:c.A260T:p.K87M	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	35632828	12A2p6	cell line	sgMsh2	35632828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	114	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon19:c.A2090G:p.K697R	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	35841755	12A2p6	cell line	sgMsh2	35841755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	56	0	0	NA	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon21:c.A3125G:p.K1042R	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9873156	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
SSC_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	93	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	184	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.78E-09	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	36068389	12A2p6	cell line	sgMsh2	36068389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	133	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon16:c.T3236C:p.L1079P,Tenm2:NM_011856:exon17:c.T3329C:p.L1110P"	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	36221410	12A2p6	cell line	sgMsh2	36221411	TT	AA	DBS	Mutect2;Vardict	2	0.25	101	0	0	NA	exonic	Tenm2	nonframeshift substitution	Tenm2:NM_011856:exon6:c.1306_1307TT:p.K436L	11qA4	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	36944085	12A2p6	cell line	sgMsh2	36944085	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	57	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon1:c.G82T:p.D28Y,Tenm2:NM_011856:exon1:c.G82T:p.D28Y"	11qA5	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	40710181	12A2p6	cell line	sgMsh2	40710181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	221	0	0	NA	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1361G:p.D454G	11qA5	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.02E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	43776045	12A2p6	cell line	sgMsh2	43776045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	23	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon2:c.A1364G:p.E455G,Adra1b:NM_001284380:exon4:c.A1364G:p.E455G,Adra1b:NM_001284381:exon5:c.A1364G:p.E455G"	11qB1.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9952866	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	43835686	12A2p6	cell line	sgMsh2	43835686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	113	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon1:c.A403G:p.S135G,Adra1b:NM_001284380:exon3:c.A403G:p.S135G,Adra1b:NM_001284381:exon4:c.A403G:p.S135G"	11qB1.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	46150613	12A2p6	cell line	sgMsh2	46150613	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	118	0	0	NA	exonic	Nipal4	synonymous SNV	Nipal4:NM_172524:exon6:c.A754C:p.R252R	11qB1.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	97	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-9068020-49173772	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	49328236	12A2p6	cell line	sgMsh2	49328236	T	-	Deletion	Mutect2;Vardict	2	0.095	316	0	0	NA	exonic	Olfr1391	frameshift deletion	Olfr1391:NM_146468:exon1:c.824delT:p.Y277Ifs*2	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.560194571	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr11	49341357	12A2p6	cell line	sgMsh2	49341357	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	383	0	0	NA	exonic	Olfr1390	frameshift deletion	Olfr1390:NM_147065:exon1:c.824delT:p.Y277Ifs*10	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	395	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	49430856	12A2p6	cell line	sgMsh2	49430856	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	344	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T379A:p.C127S	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	49564852	12A2p6	cell line	sgMsh2	49564852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	387	0	0	NA	exonic	Olfr1380	synonymous SNV	Olfr1380:NM_207573:exon1:c.A930G:p.S310S	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	49681178	12A2p6	cell line	sgMsh2	49681178	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Cnot6	synonymous SNV	"Cnot6:NM_001290741:exon9:c.A990T:p.V330V,Cnot6:NM_001363356:exon9:c.A990T:p.V330V,Cnot6:NM_001363357:exon9:c.A690T:p.V230V,Cnot6:NM_212484:exon9:c.A975T:p.V325V"	11qB1.2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	50234500	12A2p6	cell line	sgMsh2	50234500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	247	0	0	NA	exonic	Mgat4b	nonsynonymous SNV	Mgat4b:NM_145926:exon14:c.C1601T:p.P534L	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	51627692	12A2p6	cell line	sgMsh2	51627692	A	G	SNV	Mutect2;Vardict	2	0.043	126	0	0	NA	exonic	Rmnd5b	nonsynonymous SNV	Rmnd5b:NM_025346:exon4:c.T356C:p.I119T	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.253561753	3	0.9997478	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	51825013	12A2p6	cell line	sgMsh2	51825013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	58	0	0	NA	exonic	Jade2	nonsynonymous SNV	"Jade2:NM_199299:exon9:c.C1364T:p.A455V,Jade2:NM_001357588:exon10:c.C1580T:p.A527V"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	52037476	12A2p6	cell line	sgMsh2	52037476	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	271	0	0	NA	exonic	Cdkl3	frameshift deletion	Cdkl3:NM_153785:exon13:c.1771delT:p.S594Pfs*8	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
SSC_p20	chr11	53537784	12A2p6	cell line	sgMsh2	53537784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	92	0	0	NA	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon9:c.G1155A:p.E385E,Septin8:NM_001252333:exon9:c.G1149A:p.E383E,Septin8:NM_001347496:exon9:c.G1155A:p.E385E,Septin8:NM_001361968:exon9:c.G1149A:p.E383E,Septin8:NM_001361969:exon9:c.G969A:p.E323E,Septin8:NM_033144:exon9:c.G1155A:p.E385E"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	38	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9988956	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	189	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.48E-09	AAC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr11	58220139	12A2p6	cell line	sgMsh2	58220139	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	235	0	0	NA	exonic	Irgm2	nonsynonymous SNV	Irgm2:NM_019440:exon2:c.G655T:p.V219L	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	58597595	12A2p6	cell line	sgMsh2	58597595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	159	0	0	NA	exonic	Olfr324	synonymous SNV	Olfr324:NM_001011743:exon1:c.T204C:p.A68A	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.86E-09	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	58918897	12A2p6	cell line	sgMsh2	58918897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	163	0	0	NA	exonic	Btnl10	nonsynonymous SNV	"Btnl10:NM_001363414:exon2:c.A28G:p.T10A,Btnl10:NM_138678:exon2:c.A28G:p.T10A"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	58994422	12A2p6	cell line	sgMsh2	58994422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	45	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon104:c.C24009T:p.F8003F	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994396	GGA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	59042160	12A2p6	cell line	sgMsh2	59042160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	132	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon54:c.T14389C:p.L4797L,Obscn:NM_199152:exon61:c.T16348C:p.L5450L"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9999688	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	59061024	12A2p6	cell line	sgMsh2	59061024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	352	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon44:c.A11902G:p.K3968E,Obscn:NM_199152:exon47:c.A12793G:p.K4265E"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	59063667	12A2p6	cell line	sgMsh2	59063667	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	100	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon41:c.11088delT:p.F3696Lfs*1,Obscn:NM_199152:exon43:c.11715delT:p.F3905Lfs*1"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr11	59082657	12A2p6	cell line	sgMsh2	59082657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	58	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon19:c.T5847C:p.R1949R,Obscn:NM_199152:exon21:c.T6474C:p.R2158R"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	59184498	12A2p6	cell line	sgMsh2	59184498	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	218	0	0	NA	exonic	Guk1	nonsynonymous SNV	"Guk1:NM_001159410:exon7:c.C526A:p.L176M,Guk1:NM_008193:exon7:c.C562A:p.L188M"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	59503502	12A2p6	cell line	sgMsh2	59503502	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	65	0	0	NA	exonic	Zkscan17	nonsynonymous SNV	"Zkscan17:NM_001130529:exon4:c.T212C:p.L71S,Zkscan17:NM_172941:exon4:c.T272C:p.L91S"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	0.9995394	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	59769987	12A2p6	cell line	sgMsh2	59769987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	116	0	0	NA	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_012027:exon21:c.A2897G:p.K966R,Mprip:NM_201245:exon21:c.A2897G:p.K966R,Mprip:NM_001368931:exon22:c.A7055G:p.K2352R"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	59976887	12A2p6	cell line	sgMsh2	59976887	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	98	0	0	NA	exonic	Pemt	nonsynonymous SNV	"Pemt:NM_001290011:exon4:c.T418G:p.F140V,Pemt:NM_001290012:exon4:c.T307G:p.F103V,Pemt:NM_001290013:exon4:c.T307G:p.F103V,Pemt:NM_008819:exon4:c.T307G:p.F103V"	11qB1.3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999967	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	60476821	12A2p6	cell line	sgMsh2	60476821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	117	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_001103171:exon2:c.A406G:p.K136E,Myo15:NM_010862:exon2:c.A406G:p.K136E"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	60499519	12A2p6	cell line	sgMsh2	60499519	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.172	56	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_182698:exon27:c.T2805A:p.S935R,Myo15:NM_001103171:exon28:c.T6366A:p.S2122R,Myo15:NM_010862:exon29:c.T6420A:p.S2140R"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	61449691	12A2p6	cell line	sgMsh2	61449691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	48	0	0	NA	exonic	Rnf112	nonsynonymous SNV	"Rnf112:NM_001291024:exon14:c.T1612C:p.S538P,Rnf112:NM_001359130:exon14:c.T1756C:p.S586P,Rnf112:NM_009548:exon15:c.T1681C:p.S561P"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	61492914	12A2p6	cell line	sgMsh2	61492914	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	0	0	NA	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon2:c.T388A:p.F130I,Mapk7:NM_001291037:exon2:c.T178A:p.F60I,Mapk7:NM_001291033:exon3:c.T181A:p.F61I,Mapk7:NM_011841:exon3:c.T388A:p.F130I"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999872	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	84	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	61779733	12A2p6	cell line	sgMsh2	61779733	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	64	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon26:c.T2996A:p.L999H	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999112	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	61834867	12A2p6	cell line	sgMsh2	61834867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	138	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon6:c.A382G:p.I128V	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	62118270	12A2p6	cell line	sgMsh2	62118270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	182	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.T611C:p.F204S,Specc1:NM_001281818:exon4:c.T851C:p.F284S,Specc1:NM_001310526:exon4:c.T851C:p.F284S"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.95E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	62249372	12A2p6	cell line	sgMsh2	62249372	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	53	0	0	NA	exonic	Adora2b	nonsynonymous SNV	Adora2b:NM_007413:exon1:c.A271C:p.S91R	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999742	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	62334572	12A2p6	cell line	sgMsh2	62334572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	108	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon35:c.A5362G:p.R1788G,Ncor1:NM_011308:exon35:c.A5161G:p.R1721G"	11qB2	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	63070310	12A2p6	cell line	sgMsh2	63070310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	224	0	0	NA	exonic	Tekt3	nonsynonymous SNV	Tekt3:NM_027660:exon2:c.T304C:p.S102P	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	63094781	12A2p6	cell line	sgMsh2	63094781	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	79	0	0	NA	exonic	Tekt3	frameshift deletion	Tekt3:NM_027660:exon8:c.1412delA:p.K472Nfs*2	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr11	66037637	12A2p6	cell line	sgMsh2	66037637	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	190	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon31:c.A6205G:p.M2069V	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.271252108	3	0.999967	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	66145267	12A2p6	cell line	sgMsh2	66145267	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.261	91	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.G1316A:p.G439D	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	66145269	12A2p6	cell line	sgMsh2	66145269	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.261	91	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.T1314A:p.D438E	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	66155422	12A2p6	cell line	sgMsh2	66155422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	91	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon4:c.A893T:p.E298V	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	67025212	12A2p6	cell line	sgMsh2	67025212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	44	0	0	NA	exonic	Tmem220	synonymous SNV	"Tmem220:NM_001291042:exon1:c.T34C:p.L12L,Tmem220:NM_001291043:exon1:c.T34C:p.L12L,Tmem220:NM_177392:exon1:c.T34C:p.L12L"	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9993825	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	67100859	12A2p6	cell line	sgMsh2	67100859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	186	0	0	NA	exonic	Myh3	nonsynonymous SNV	Myh3:NM_001099635:exon37:c.T5348C:p.M1783T	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.65E-09	ATG	nonsynonymous	GAA	9	GAAGAAGAA	NA
SSC_p20	chr11	67185256	12A2p6	cell line	sgMsh2	67185256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	212	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon20:c.T2268A:p.I756I	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.05E-09	TTG	synonymous	CATTGA	13	CATTGACATTGAC	NA
SSC_p20	chr11	67197288	12A2p6	cell line	sgMsh2	67197288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	162	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon40:c.T5729C:p.L1910P	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	241	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	67243457	12A2p6	cell line	sgMsh2	67243457	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	295	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon11:c.T937G:p.F313V	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	67289796	12A2p6	cell line	sgMsh2	67289796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	193	0	0	NA	exonic	Myh8	synonymous SNV	Myh8:NM_177369:exon16:c.T1857C:p.T619T	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.33E-09	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	67881220	12A2p6	cell line	sgMsh2	67881220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	75	0	0	NA	exonic	Usp43	nonsynonymous SNV	"Usp43:NM_001291049:exon10:c.C1521A:p.S507R,Usp43:NM_173754:exon10:c.C1521A:p.S507R"	11qB3	chr11-49174503-68204048	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	68590905	12A2p6	cell line	sgMsh2	68590905	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	85	0	0	NA	exonic	Ccdc42	frameshift deletion	Ccdc42:NM_177779:exon4:c.324delA:p.A111Pfs*6	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr11	68771959	12A2p6	cell line	sgMsh2	68771959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Myh10	nonsynonymous SNV	Myh10:NM_175260:exon15:c.A1837G:p.R613G	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	68784960	12A2p6	cell line	sgMsh2	68784960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	220	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon18:c.A2214G:p.K738K	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	73	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	68814480	12A2p6	cell line	sgMsh2	68814480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	102	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon40:c.A5712G:p.Q1904Q	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	69106725	12A2p6	cell line	sgMsh2	69106725	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	38	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon19:c.T2725G:p.F909V,Per1:NM_011065:exon19:c.T2725G:p.F909V"	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9988956	CTT	nonsynonymous	CCTTC	10	CCTTCCCTTC	NA
SSC_p20	chr11	69314742	12A2p6	cell line	sgMsh2	69314743	TC	-	Deletion	Strelka2;Vardict	2	0.1739	69	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon9:c.1264_1265del:p.D422Cfs*13	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATC	frameshift	TC	12	TCTCTCTCTCTC	-2
SSC_p20	chr11	69355376	12A2p6	cell line	sgMsh2	69355376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	74	0	0	NA	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon20:c.T3371C:p.L1124P	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	69478799	12A2p6	cell line	sgMsh2	69478799	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	81	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon30:c.A4850C:p.E1617A	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	69736805	12A2p6	cell line	sgMsh2	69736805	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	73	0	0	NA	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon25:c.A4275G:p.G1425G	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999629	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	109	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999989	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	69795867	12A2p6	cell line	sgMsh2	69795867	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	89	0	0	NA	exonic	Chrnb1	frameshift deletion	Chrnb1:NM_009601:exon1:c.13delG:p.A5Rfs*5	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC_p20	chr11	69909053	12A2p6	cell line	sgMsh2	69909053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	139	0	0	NA	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon18:c.T3090C:p.D1030D,Neurl4:NM_001013414:exon19:c.T3162C:p.D1054D,Neurl4:NM_001291118:exon19:c.T3156C:p.D1052D"	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	70030599	12A2p6	cell line	sgMsh2	70030599	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	174	0	0	NA	exonic	Dlg4	stopgain	Dlg4:NM_007864:exon4:c.T155A:p.L52X	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	70514560	12A2p6	cell line	sgMsh2	70514560	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	124	0	0	NA	exonic	Vmo1	stopgain	Vmo1:NM_001013607:exon1:c.43delG:p.V15fs*0	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	NA	NA	ACC	nonsynonymous	C	5	CCCCC	-1
SSC_p20	chr11	70607790	12A2p6	cell line	sgMsh2	70607790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_001045959:exon16:c.T1780C:p.Y594H,Mink1:NM_001045964:exon16:c.T1780C:p.Y594H,Mink1:NM_016713:exon16:c.T1780C:p.Y594H,Mink1:NM_176893:exon16:c.T1780C:p.Y594H"	11qB3	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	112	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	72454163	12A2p6	cell line	sgMsh2	72454163	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	62	0	0	NA	exonic	Spns2	nonsynonymous SNV	"Spns2:NM_001276383:exon11:c.A1045C:p.S349R,Spns2:NM_153060:exon11:c.A1498C:p.S500R"	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	72550138	12A2p6	cell line	sgMsh2	72550138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	78	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon1:c.A71G:p.Y24C	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	72922416	12A2p6	cell line	sgMsh2	72922416	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	147	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon53:c.C8456T:p.P2819L	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	0.288942463	3	0.997698	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	72961422	12A2p6	cell line	sgMsh2	72961422	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	16	0	0	NA	exonic	Atp2a3	synonymous SNV	"Atp2a3:NM_001163336:exon1:c.C69A:p.G23G,Atp2a3:NM_001163337:exon1:c.C69A:p.G23G,Atp2a3:NM_016745:exon1:c.C69A:p.G23G"	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9907451	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	73048053	12A2p6	cell line	sgMsh2	73048053	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	29	0	0	NA	exonic	Ncbp3	nonsynonymous SNV	Ncbp3:NM_025818:exon1:c.G154A:p.V52M	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9973605	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	73160718	12A2p6	cell line	sgMsh2	73160718	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	65	0	0	NA	exonic	P2rx5	nonsynonymous SNV	"P2rx5:NM_001376982:exon1:c.T122C:p.L41P,P2rx5:NM_001376983:exon1:c.T122C:p.L41P,P2rx5:NM_033321:exon1:c.T122C:p.L41P"	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	0.554297786	2	0.9536145	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	73375046	12A2p6	cell line	sgMsh2	73375046	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	606	0	0	NA	exonic	Olfr376	nonsynonymous SNV	"Olfr376:NM_146922:exon2:c.G296A:p.G99D,Olfr376:NM_001172686:exon3:c.G305A:p.G102D"	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	0.153316409	3	1	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	73711263	12A2p6	cell line	sgMsh2	73711263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	225	0	0	NA	exonic	Zfp735	synonymous SNV	Zfp735:NM_001126489:exon4:c.T1032C:p.H344H	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	73787214	12A2p6	cell line	sgMsh2	73787214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	618	0	0	NA	exonic	Olfr390	nonsynonymous SNV	Olfr390:NM_146347:exon1:c.T275C:p.I92T	11qB4	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	ATC	nonsynonymous	CATC	9	CATCCATCC	NA
SSC_p20	chr11	74365244	12A2p6	cell line	sgMsh2	74365244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	199	0	0	NA	exonic	Olfr412	nonsynonymous SNV	Olfr412:NM_001011851:exon1:c.A574G:p.T192A	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.18E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	74909742	12A2p6	cell line	sgMsh2	74909742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	100	0	0	NA	exonic	Srr	synonymous SNV	"Srr:NM_001362744:exon3:c.A120G:p.V40V,Srr:NM_001163311:exon6:c.A546G:p.V182V,Srr:NM_001362743:exon7:c.A546G:p.V182V,Srr:NM_013761:exon7:c.A546G:p.V182V"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	75166452	12A2p6	cell line	sgMsh2	75166452	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	32	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.C1130T:p.P377L,Hic1:NM_010430:exon2:c.C1610T:p.P537L"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9980255	CGG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr11	75167229	12A2p6	cell line	sgMsh2	75167229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	22	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T353C:p.V118A,Hic1:NM_010430:exon2:c.T833C:p.V278A"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.994809	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	75404918	12A2p6	cell line	sgMsh2	75404918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	53	0	0	NA	exonic	Smyd4	stoploss	Smyd4:NM_001102611:exon11:c.A2399G:p.X800W	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999742	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	197	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.22E-09	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	75671245	12A2p6	cell line	sgMsh2	75671245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	199	0	0	NA	exonic	Myo1c	nonsynonymous SNV	"Myo1c:NM_001080774:exon26:c.A2558G:p.Y853C,Myo1c:NM_001080775:exon26:c.A2606G:p.Y869C,Myo1c:NM_001370611:exon26:c.A2663G:p.Y888C,Myo1c:NM_008659:exon26:c.A2558G:p.Y853C"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-09	TAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr11	76797605	12A2p6	cell line	sgMsh2	76797605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	131	0	0	NA	exonic	Cpd	nonsynonymous SNV	Cpd:NM_007754:exon12:c.A2840G:p.Y947C	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	76949975	12A2p6	cell line	sgMsh2	76949975	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	144	0	0	NA	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon3:c.T227G:p.F76C	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	77078398	12A2p6	cell line	sgMsh2	77078398	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	101	0	0	NA	exonic	Nsrp1	nonsynonymous SNV	Nsrp1:NM_001012309:exon1:c.A1C:p.M1L	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	77824228	12A2p6	cell line	sgMsh2	77824228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	37	0	0	NA	exonic	Myo18a	synonymous SNV	"Myo18a:NM_001291214:exon12:c.G1443A:p.R481R,Myo18a:NM_011586:exon13:c.G2448A:p.R816R,Myo18a:NM_001291212:exon14:c.G2484A:p.R828R,Myo18a:NM_001291213:exon14:c.G2592A:p.R864R,Myo18a:NM_001291215:exon15:c.G1509A:p.R503R"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9987833	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	77846442	12A2p6	cell line	sgMsh2	77846442	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	104	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon29:c.A3764C:p.D1255A,Myo18a:NM_011586:exon30:c.A4769C:p.D1590A,Myo18a:NM_001291212:exon31:c.A4805C:p.D1602A,Myo18a:NM_001291213:exon31:c.A4913C:p.D1638A,Myo18a:NM_001291215:exon32:c.A3830C:p.D1277A"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	77962904	12A2p6	cell line	sgMsh2	77962904	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.293	35	0	0	NA	exonic	Sez6	frameshift insertion	"Sez6:NM_001291225:exon4:c.900dupG:p.D304Rfs*6,Sez6:NM_021286:exon4:c.900dupG:p.D304Rfs*6"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTG	frameshift	G	5	GGGGG	1
SSC_p20	chr11	78219960	12A2p6	cell line	sgMsh2	78219960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	101	0	0	NA	exonic	Supt6	nonsynonymous SNV	Supt6:NM_009297:exon25:c.C3265A:p.L1089I	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999975	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	63	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	75	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	80170715	12A2p6	cell line	sgMsh2	80170715	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	162	0	0	NA	exonic	Adap2	nonsynonymous SNV	Adap2:NM_172133:exon7:c.G695A:p.R232H	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	7.62E-09	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	80242112	12A2p6	cell line	sgMsh2	80242112	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	186	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon8:c.T251G:p.F84C,Rhot1:NM_001163354:exon9:c.T671G:p.F224C,Rhot1:NM_001163355:exon9:c.T671G:p.F224C,Rhot1:NM_001362868:exon9:c.T671G:p.F224C,Rhot1:NM_021536:exon9:c.T671G:p.F224C,Rhot1:NM_001362869:exon10:c.T410G:p.F137C"	11qB5	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.65E-09	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	82722463	12A2p6	cell line	sgMsh2	82722463	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	218	0	0	NA	exonic	Cct6b	synonymous SNV	"Cct6b:NM_001291242:exon12:c.T1251G:p.G417G,Cct6b:NM_009839:exon12:c.T1368G:p.G456G"	11qC	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	82789697	12A2p6	cell line	sgMsh2	82789697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	112	0	0	NA	exonic	Lig3	stopgain	"Lig3:NM_001291245:exon6:c.C1198T:p.Q400X,Lig3:NM_001291246:exon6:c.C1195T:p.Q399X,Lig3:NM_001291247:exon6:c.C1195T:p.Q399X,Lig3:NM_010716:exon6:c.C1198T:p.Q400X"	11qC	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	GCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	82898806	12A2p6	cell line	sgMsh2	82898806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	64	0	0	NA	exonic	Fndc8	synonymous SNV	Fndc8:NM_030224:exon3:c.A789T:p.V263V	11qC	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999112	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	82913307	12A2p6	cell line	sgMsh2	82913307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	0	0	NA	exonic	Unc45b	synonymous SNV	Unc45b:NM_178680:exon4:c.T309C:p.C103C	11qC	chr11-68212741-82929860	5.76746429	5.76746429	0	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	83753866	12A2p6	cell line	sgMsh2	83753866	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	27	0	0	NA	exonic	Heatr6	synonymous SNV	Heatr6:NM_145432:exon1:c.C144T:p.S48S	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CCC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	83955095	12A2p6	cell line	sgMsh2	83955095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	184	0	0	NA	exonic	Ddx52	synonymous SNV	Ddx52:NM_030096:exon10:c.T1245C:p.P415P	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.78E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	84522199	12A2p6	cell line	sgMsh2	84522199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	98	0	0	NA	exonic	Lhx1	nonsynonymous SNV	Lhx1:NM_008498:exon2:c.A260G:p.N87S	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	84878147	12A2p6	cell line	sgMsh2	84878147	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	162	0	0	NA	exonic	Pigw	frameshift deletion	"Pigw:NM_001077636:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_001363112:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_027388:exon2:c.355delA:p.I119Sfs*2"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	173	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.28E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	85457925	12A2p6	cell line	sgMsh2	85457925	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	148	0	0	NA	exonic	Bcas3	frameshift deletion	"Bcas3:NM_001166643:exon9:c.642delA:p.K216Nfs*14,Bcas3:NM_001166642:exon10:c.642delA:p.K216Nfs*14,Bcas3:NM_138681:exon10:c.642delA:p.K216Nfs*14"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr11	86504273	12A2p6	cell line	sgMsh2	86504273	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	134	0	0	NA	exonic	Rps6kb1	nonsynonymous SNV	"Rps6kb1:NM_001114334:exon14:c.C1333T:p.P445S,Rps6kb1:NM_001363162:exon15:c.C1174T:p.P392S"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	132	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	87402658	12A2p6	cell line	sgMsh2	87402658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	114	0	0	NA	exonic	Rad51c	nonsynonymous SNV	"Rad51c:NM_001291440:exon2:c.T371C:p.I124T,Rad51c:NM_053269:exon2:c.T317C:p.I106T"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	87542566	12A2p6	cell line	sgMsh2	87542566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	148	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon26:c.G4002A:p.K1334K,Tex14:NM_031386:exon26:c.G3966A:p.K1322K"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	87567526	12A2p6	cell line	sgMsh2	87567526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	183	0	0	NA	exonic	Septin4	nonsynonymous SNV	Septin4:NM_001368775:exon1:c.T725G:p.I242S	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.86E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	87730197	12A2p6	cell line	sgMsh2	87730197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	160	0	0	NA	exonic	Rnf43	synonymous SNV	"Rnf43:NM_001363437:exon7:c.G534A:p.Q178Q,Rnf43:NM_172448:exon8:c.G915A:p.Q305Q"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	9.04E-09	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	48	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	88952463	12A2p6	cell line	sgMsh2	88952463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	132	0	0	NA	exonic	Scpep1	synonymous SNV	Scpep1:NM_029023:exon2:c.T168C:p.Y56Y	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	88964817	12A2p6	cell line	sgMsh2	88964817	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	231	0	0	NA	exonic	Elobl	frameshift deletion	Elobl:NM_001360780:exon3:c.419delC:p.P140Lfs*28	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	144	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	89440739	12A2p6	cell line	sgMsh2	89440739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	111	0	0	NA	exonic	Ankfn1	synonymous SNV	Ankfn1:NM_001327810:exon13:c.A1566G:p.T522T	11qC	chr11-83350706-94334231	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999991	CTG	synonymous	AGCTG	10	AGCTGAGCTG	NA
SSC_p20	chr11	94334532	12A2p6	cell line	sgMsh2	94334532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	181	0	0	NA	exonic	Ankrd40	nonsynonymous SNV	"Ankrd40:NM_027799:exon3:c.A388G:p.T130A,Ankrd40:NM_146024:exon3:c.A388G:p.T130A"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.05E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	94465827	12A2p6	cell line	sgMsh2	94465827	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	96	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon3:c.T482A:p.I161N,Cacna1g:NM_001177888:exon3:c.T482A:p.I161N,Cacna1g:NM_001177890:exon3:c.T482A:p.I161N,Cacna1g:NM_009783:exon3:c.T482A:p.I161N"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	94491389	12A2p6	cell line	sgMsh2	94491389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	21	0	0	NA	exonic	Epn3	nonsynonymous SNV	"Epn3:NM_001361558:exon9:c.T1592C:p.L531P,Epn3:NM_027984:exon10:c.T1673C:p.L558P"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9942833	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	8.29E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	161	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	8.29E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	96961477	12A2p6	cell line	sgMsh2	96961477	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	94	0	0	NA	exonic	Sp2	frameshift deletion	"Sp2:NM_001080964:exon3:c.617delG:p.G206Vfs*3,Sp2:NM_001363226:exon3:c.602delG:p.G201Vfs*3,Sp2:NM_030220:exon3:c.620delG:p.G207Vfs*3,Sp2:NM_001363225:exon4:c.602delG:p.G201Vfs*3"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr11	97022316	12A2p6	cell line	sgMsh2	97022316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	72	0	0	NA	exonic	Sp6	nonsynonymous SNV	"Sp6:NM_001363230:exon2:c.T854C:p.V285A,Sp6:NM_031183:exon2:c.T854C:p.V285A"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	97181660	12A2p6	cell line	sgMsh2	97181660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	302	0	0	NA	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon4:c.A448G:p.T150A	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	97674504	12A2p6	cell line	sgMsh2	97674504	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.088	102	0	0	NA	exonic	Mllt6	frameshift deletion	Mllt6:NM_139311:exon11:c.1679delC:p.P561Hfs*77	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.518917077	NA	NA	ACC	frameshift	NA	NA	NA	-1
SSC_p20	chr11	98152821	12A2p6	cell line	sgMsh2	98152821	C	-	Deletion	Mutect2;Vardict	2	0.3	41	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
SSC_p20	chr11	98210931	12A2p6	cell line	sgMsh2	98210931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	160	0	0	NA	exonic	Cdk12	synonymous SNV	"Cdk12:NM_001109626:exon2:c.T1614C:p.T538T,Cdk12:NM_001109628:exon2:c.T1614C:p.T538T,Cdk12:NM_026952:exon2:c.T1614C:p.T538T"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	98250334	12A2p6	cell line	sgMsh2	98250334	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	69	0	0	NA	exonic	Cdk12	frameshift deletion	"Cdk12:NM_001109626:exon14:c.4400delG:p.A1469Lfs*34,Cdk12:NM_001109628:exon14:c.4373delG:p.A1460Lfs*34"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr11	98488928	12A2p6	cell line	sgMsh2	98488928	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	89	0	0	NA	exonic	Ikzf3	frameshift deletion	Ikzf3:NM_011771:exon5:c.513delA:p.K171Nfs*87	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	132	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	98831395	12A2p6	cell line	sgMsh2	98831395	-	C	Insertion	Strelka2;Vardict	2	0.1889	90	0	0	NA	exonic	Casc3	frameshift insertion	Casc3:NM_138660:exon12:c.2059dupC:p.P690Tfs*1	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGC	frameshift	C	8	CCCCCCCC	1
SSC_p20	chr11	99780487	12A2p6	cell line	sgMsh2	99780487	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.212	501	0	0	NA	exonic	Krtap4-8	nonsynonymous SNV	Krtap4-8:NM_001085547:exon1:c.G157A:p.V53M	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	99864620	12A2p6	cell line	sgMsh2	99864620	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	144	0	0	NA	exonic	Gm11559	nonsynonymous SNV	Gm11559:NM_001177484:exon1:c.A94C:p.S32R	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	99873936	12A2p6	cell line	sgMsh2	99873936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	123	0	0	NA	exonic	Krtap9-1	nonsynonymous SNV	Krtap9-1:NM_015741:exon1:c.T497C:p.V166A	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	100132047	12A2p6	cell line	sgMsh2	100132047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	90	0	0	NA	exonic	Krt15	nonsynonymous SNV	Krt15:NM_008469:exon8:c.A1341T:p.K447N	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999898	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	100413732	12A2p6	cell line	sgMsh2	100413732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	74	0	0	NA	exonic	P3h4	nonsynonymous SNV	"P3h4:NM_001378981:exon3:c.A682G:p.S228G,P3h4:NM_176830:exon3:c.A682G:p.S228G"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	CTG	nonsynonymous	TGC	9	TGCTGCTGC	NA
SSC_p20	chr11	100498252	12A2p6	cell line	sgMsh2	100498252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	122	0	0	NA	exonic	Acly	nonsynonymous SNV	"Acly:NM_134037:exon15:c.T1673C:p.V558A,Acly:NM_001199296:exon16:c.T1703C:p.V568A"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	100741796	12A2p6	cell line	sgMsh2	100741796	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	98	0	0	NA	exonic	Kcnh4	nonsynonymous SNV	Kcnh4:NM_001081194:exon16:c.C2864A:p.A955D	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	100875561	12A2p6	cell line	sgMsh2	100875561	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.082	168	0	0	NA	exonic	Stat5a	frameshift deletion	"Stat5a:NM_001164062:exon9:c.1068delG:p.G358Efs*2,Stat5a:NM_001362680:exon10:c.1068delG:p.G358Efs*1,Stat5a:NM_011488:exon10:c.1068delG:p.G358Efs*1"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.483536367	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr11	101165151	12A2p6	cell line	sgMsh2	101165151	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	90	0	0	NA	exonic	Plekhh3	synonymous SNV	"Plekhh3:NM_001346769:exon9:c.C1321A:p.R441R,Plekhh3:NM_146030:exon9:c.C1321A:p.R441R"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	CGG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	122	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	102268883	12A2p6	cell line	sgMsh2	102268883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	31	0	0	NA	exonic	Asb16	stopgain	Asb16:NM_148953:exon1:c.G61T:p.E21X	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9978249	AGA	nonsynonymous	AG	8	AGAGAGAG	NA
SSC_p20	chr11	102435775	12A2p6	cell line	sgMsh2	102435775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	61	0	0	NA	exonic	Grn	nonsynonymous SNV	Grn:NM_008175:exon11:c.T1240C:p.C414R	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	102466479	12A2p6	cell line	sgMsh2	102466479	A	-	Deletion	Strelka2;Vardict	2	0.2564	78	0	0	NA	exonic	Itga2b	stopgain	Itga2b:NM_010575:exon6:c.665delT:p.L222fs*0	11qD	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
SSC_p20	chr11	102886351	12A2p6	cell line	sgMsh2	102886351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	139	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.A980G:p.H327R	11qE1	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	103186660	12A2p6	cell line	sgMsh2	103186660	G	-	Deletion	Strelka2;Vardict	2	0.0526	95	0	0	NA	exonic	Fmnl1	frameshift deletion	"Fmnl1:NM_001077698:exon9:c.845delG:p.G283Efs*25,Fmnl1:NM_019679:exon9:c.845delG:p.G283Efs*25"	11qE1	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.310170889	NA	NA	CGG	frameshift	NA	NA	NA	-1
SSC_p20	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	72	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-94334232-103387642	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	104517477	12A2p6	cell line	sgMsh2	104517477	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	104	0	0	NA	exonic	Cdc27	stopgain	"Cdc27:NM_001285990:exon12:c.G1219T:p.G407X,Cdc27:NM_001285988:exon13:c.G1621T:p.G541X,Cdc27:NM_001285989:exon13:c.G1603T:p.G535X,Cdc27:NM_145436:exon13:c.G1606T:p.G536X"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	105128850	12A2p6	cell line	sgMsh2	105128850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	117	0	0	NA	exonic	Mettl2	synonymous SNV	Mettl2:NM_172567:exon3:c.A312G:p.A104A	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.684027055	2	0.8051596	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	105281103	12A2p6	cell line	sgMsh2	105281103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	88	0	0	NA	exonic	Tlk2	nonsynonymous SNV	"Tlk2:NM_001294329:exon20:c.C1786A:p.L596M,Tlk2:NM_001361996:exon20:c.C1906A:p.L636M,Tlk2:NM_001112705:exon22:c.C2098A:p.L700M,Tlk2:NM_001294331:exon22:c.C2002A:p.L668M"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999913	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	106149600	12A2p6	cell line	sgMsh2	106149600	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	188	0	0	NA	exonic	Map3k3	frameshift deletion	Map3k3:NM_011947:exon11:c.990delC:p.R332Vfs*74	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr11	106245359	12A2p6	cell line	sgMsh2	106245359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	156	0	0	NA	exonic	Ddx42	synonymous SNV	"Ddx42:NM_001361642:exon9:c.A1149G:p.G383G,Ddx42:NM_001361640:exon11:c.A1446G:p.G482G,Ddx42:NM_001361644:exon11:c.A1143G:p.G381G,Ddx42:NM_001361643:exon15:c.A1143G:p.G381G,Ddx42:NM_028074:exon16:c.A1935G:p.G645G"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	106320885	12A2p6	cell line	sgMsh2	106320885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	99	0	0	NA	exonic	Scn4a	synonymous SNV	Scn4a:NM_133199:exon24:c.T4305C:p.F1435F	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	CAA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	106324595	12A2p6	cell line	sgMsh2	106324595	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	234	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon19:c.A3554C:p.N1185T	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	106817940	12A2p6	cell line	sgMsh2	106817940	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	146	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon17:c.A2051G:p.Q684R,Cep95:NM_177088:exon18:c.A2180G:p.Q727R"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.253561753	3	0.9999362	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	107073916	12A2p6	cell line	sgMsh2	107073916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	241	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon11:c.A4106G:p.N1369S,Bptf:NM_176850:exon11:c.A4106G:p.N1369S"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	107076633	12A2p6	cell line	sgMsh2	107076633	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	118	0	0	NA	exonic	Bptf	stopgain	"Bptf:NM_001359590:exon10:c.2920delA:p.M974fs*0,Bptf:NM_176850:exon10:c.2920delA:p.M974fs*0"	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	nonsynonymous	T	8	TTTTTTTT	-1
SSC_p20	chr11	110086558	12A2p6	cell line	sgMsh2	110086558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	46	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon4:c.T374C:p.V125A	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994913	CAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr11	110285766	12A2p6	cell line	sgMsh2	110285766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	117	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon28:c.T3659C:p.L1220P	11qE1	chr11-103394392-112692004	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	115250473	12A2p6	cell line	sgMsh2	115250473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	21	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon15:c.T2818C:p.C940R	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9942833	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	115609286	12A2p6	cell line	sgMsh2	115609286	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	87	0	0	NA	exonic	Mif4gd	synonymous SNV	"Mif4gd:NM_001243586:exon3:c.C342T:p.Y114Y,Mif4gd:NM_027162:exon3:c.C342T:p.Y114Y,Mif4gd:NM_001243584:exon4:c.C342T:p.Y114Y,Mif4gd:NM_001243587:exon4:c.C342T:p.Y114Y"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999905	GGT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	115822071	12A2p6	cell line	sgMsh2	115822071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	117	0	0	NA	exonic	Tsen54	frameshift deletion	Tsen54:NM_029557:exon10:c.1383delA:p.N463Tfs*27	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	72	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	116023510	12A2p6	cell line	sgMsh2	116023510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	143	0	0	NA	exonic	H3f3b	nonsynonymous SNV	H3f3b:NM_008211:exon4:c.G308T:p.G103V	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	116221959	12A2p6	cell line	sgMsh2	116221959	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	61	0	0	NA	exonic	Evpl	nonsynonymous SNV	Evpl:NM_025276:exon22:c.G4904A:p.R1635Q	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	116607343	12A2p6	cell line	sgMsh2	116607343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	47	0	0	NA	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon3:c.A29G:p.N10S,Rhbdf2:NM_172572:exon3:c.A29G:p.N10S"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	42	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr11	117756090	12A2p6	cell line	sgMsh2	117756090	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	107	0	0	NA	exonic	Tnrc6c	synonymous SNV	Tnrc6c:NM_198022:exon18:c.C4920T:p.Y1640Y	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.471742797	2	0.9998995	ACC	synonymous	NA	NA	NA	NA
SSC_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	100	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	117773074	12A2p6	cell line	sgMsh2	117773074	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	83	0	0	NA	exonic	Tmc6	frameshift deletion	Tmc6:NM_145439:exon12:c.1405delG:p.V469Wfs*23	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr11	118066351	12A2p6	cell line	sgMsh2	118066351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	64	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon54:c.A8399G:p.Y2800C	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999112	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	119350123	12A2p6	cell line	sgMsh2	119350123	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	79	0	0	NA	exonic	Sgsh	synonymous SNV	Sgsh:NM_018822:exon5:c.C517T:p.L173L	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9997892	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	119351006	12A2p6	cell line	sgMsh2	119351006	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	100	0	0	NA	exonic	Sgsh	synonymous SNV	Sgsh:NM_018822:exon3:c.G273A:p.L91L	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	GCA	synonymous	NA	NA	NA	NA
SSC_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	96	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	119440808	12A2p6	cell line	sgMsh2	119440808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	216	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon29:c.A6845G:p.H2282R	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	33	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9982077	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	120011210	12A2p6	cell line	sgMsh2	120011210	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	77	0	0	NA	exonic	Aatk	nonsynonymous SNV	"Aatk:NM_001377503:exon8:c.G1828T:p.G610C,Aatk:NM_001198785:exon11:c.G2359T:p.G787C,Aatk:NM_001198787:exon11:c.G2188T:p.G730C,Aatk:NM_007377:exon11:c.G2188T:p.G730C"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	CCC	nonsynonymous	CCCA	9	CCCACCCAC	NA
SSC_p20	chr11	120105448	12A2p6	cell line	sgMsh2	120105448	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	198	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001164799:exon16:c.A2798T:p.E933V,Slc38a10:NM_001164800:exon16:c.A2795T:p.E932V,Slc38a10:NM_001361697:exon16:c.A2573T:p.E858V,Slc38a10:NM_001361698:exon16:c.A2558T:p.E853V,Slc38a10:NM_001164798:exon17:c.A2819T:p.E940V,Slc38a10:NM_001361696:exon17:c.A2816T:p.E939V,Slc38a10:NM_001361699:exon17:c.A2147T:p.E716V,Slc38a10:NM_024249:exon17:c.A2822T:p.E941V"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.20E-09	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	120271924	12A2p6	cell line	sgMsh2	120271924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	27	0	0	NA	exonic	Bahcc1	synonymous SNV	Bahcc1:NM_001347621:exon5:c.A1047G:p.T349T	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	120284409	12A2p6	cell line	sgMsh2	120284409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	52	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon18:c.C5308T:p.R1770C	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	TAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	116	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr11	120377089	12A2p6	cell line	sgMsh2	120377089	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	37	0	0	NA	exonic	Faap100	stopgain	Faap100:NM_027980:exon3:c.857delT:p.L286fs*0	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
SSC_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	64	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	120595036	12A2p6	cell line	sgMsh2	120595036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.217	252	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon5:c.A697G:p.K233E	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTT	nonsynonymous	GCT	9	GCTGCTGCT	NA
SSC_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	82	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999845	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr11	121448988	12A2p6	cell line	sgMsh2	121448988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	94	0	0	NA	exonic	Fn3k	nonsynonymous SNV	Fn3k:NM_022014:exon5:c.T575C:p.L192P	11qE2	chr11-112710790-121956668	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	3501299	12A2p6	cell line	sgMsh2	3501299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3040G:p.R1014G,Asxl2:NM_001270988:exon12:c.A3184G:p.R1062G"	12qA1.1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	4973973	12A2p6	cell line	sgMsh2	4973973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	99	0	0	NA	exonic	Atad2b	nonsynonymous SNV	Atad2b:NM_001362349:exon16:c.T1822G:p.C608G	12qA1.1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	5091439	12A2p6	cell line	sgMsh2	5091439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	143	0	0	NA	exonic	Klhl29	nonsynonymous SNV	Klhl29:NM_001164493:exon9:c.A1544G:p.Y515C	12qA1.1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.28E-08	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	7994945	12A2p6	cell line	sgMsh2	7994945	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	90	0	0	NA	exonic	Apob	frameshift deletion	Apob:NM_009693:exon17:c.2564delC:p.I858Sfs*4	12qA1.1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr12	13390999	12A2p6	cell line	sgMsh2	13390999	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	108	0	0	NA	exonic	Nbas	frameshift deletion	Nbas:NM_027706:exon29:c.3329delC:p.T1110Sfs*30	12qA1.1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC_p20	chr12	21290291	12A2p6	cell line	sgMsh2	21290291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	215	0	0	NA	exonic	Cpsf3	nonsynonymous SNV	"Cpsf3:NM_001364373:exon2:c.T94C:p.F32L,Cpsf3:NM_018813:exon2:c.T94C:p.F32L"	12qA1.3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	24096961	12A2p6	cell line	sgMsh2	24096961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	131	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	"9030624G23Rik:NM_001256489:exon1:c.A8G:p.D3G,9030624G23Rik:NM_001382819:exon1:c.A8G:p.D3G"	12qA1.3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	28559969	12A2p6	cell line	sgMsh2	28559969	A	C	SNV	Mutect2;Vardict	2	0.034	155	0	0	NA	exonic	Allc	nonsynonymous SNV	"Allc:NM_001364359:exon8:c.T628G:p.L210V,Allc:NM_053156:exon8:c.T628G:p.L210V"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.200490689	3	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	28737836	12A2p6	cell line	sgMsh2	28737836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	76	0	0	NA	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon3:c.A1247G:p.K416R,Trappc12:NM_001161411:exon3:c.A1247G:p.K416R,Trappc12:NM_001377005:exon3:c.A1247G:p.K416R,Trappc12:NM_001377006:exon3:c.A1247G:p.K416R,Trappc12:NM_001377007:exon3:c.A1247G:p.K416R,Trappc12:NM_178811:exon3:c.A1247G:p.K416R"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	28863069	12A2p6	cell line	sgMsh2	28863069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	159	0	0	NA	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.G468T:p.W156C,Eipr1:NM_201357:exon7:c.G768T:p.W256C,Eipr1:NM_001379229:exon8:c.G468T:p.W156C"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999998	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	29827788	12A2p6	cell line	sgMsh2	29827788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	104	0	0	NA	exonic	Myt1l	nonsynonymous SNV	"Myt1l:NM_001361658:exon9:c.A1374C:p.R458S,Myt1l:NM_001361660:exon9:c.A1374C:p.R458S,Myt1l:NM_001093775:exon10:c.A1437C:p.R479S,Myt1l:NM_001093776:exon10:c.A1437C:p.R479S,Myt1l:NM_001093778:exon10:c.A1434C:p.R478S,Myt1l:NM_001361655:exon10:c.A1437C:p.R479S,Myt1l:NM_001361656:exon10:c.A1437C:p.R479S,Myt1l:NM_001361657:exon10:c.A1437C:p.R479S,Myt1l:NM_001361659:exon10:c.A1437C:p.R479S,Myt1l:NM_008666:exon10:c.A1437C:p.R479S"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999972	GAA	nonsynonymous	AAATCC	13	AAATCCAAATCCA	NA
SSC_p20	chr12	30226882	12A2p6	cell line	sgMsh2	30226882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	90	0	0	NA	exonic	Sntg2	synonymous SNV	"Sntg2:NM_001324521:exon13:c.C471T:p.S157S,Sntg2:NM_001324519:exon14:c.C993T:p.S331S,Sntg2:NM_001324520:exon14:c.C975T:p.S325S,Sntg2:NM_172951:exon14:c.C1170T:p.S390S"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	202	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr12	31630817	12A2p6	cell line	sgMsh2	31630817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	157	0	0	NA	exonic	Bcap29	nonsynonymous SNV	"Bcap29:NM_007530:exon2:c.A169G:p.I57V,Bcap29:NM_001164090:exon3:c.A169G:p.I57V"	12qA2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	32850497	12A2p6	cell line	sgMsh2	32850497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	230	0	0	NA	exonic	Nampt	synonymous SNV	Nampt:NM_021524:exon11:c.A1440G:p.A480A	12qA3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	1	0.9983993	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	137	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	38438687	12A2p6	cell line	sgMsh2	38438687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	80	0	0	NA	exonic	Dgkb	nonsynonymous SNV	"Dgkb:NM_001361688:exon22:c.A2051G:p.K684R,Dgkb:NM_178681:exon22:c.A2051G:p.K684R,Dgkb:NM_001361686:exon23:c.A2072G:p.K691R"	12qA3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9994573	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	127	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9985875	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	44571709	12A2p6	cell line	sgMsh2	44571709	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	112	0	0	NA	exonic	Nrcam	synonymous SNV	"Nrcam:NM_001146031:exon21:c.A2451C:p.P817P,Nrcam:NM_176930:exon22:c.A2481C:p.P827P"	12qB2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	51371627	12A2p6	cell line	sgMsh2	51371627	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	196	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001167964:exon13:c.A1453C:p.K485Q,G2e3:NM_001015099:exon14:c.A1735C:p.K579Q,G2e3:NM_001167963:exon15:c.A1804C:p.K602Q"	12qB3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.24E-09	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	51774736	12A2p6	cell line	sgMsh2	51774736	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	171	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon21:c.T3169G:p.L1057V	12qB3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.77E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	176	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.70E-09	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
SSC_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.196	110	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	53142056	12A2p6	cell line	sgMsh2	53142056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	207	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T6252C:p.I2084I	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.448	154	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
SSC_p20	chr12	54927647	12A2p6	cell line	sgMsh2	54927647	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.169	152	0	0	NA	exonic	Baz1a	frameshift deletion	Baz1a:NM_013815:exon12:c.1427delT:p.F476Sfs*2	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.996556658	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr12	55281769	12A2p6	cell line	sgMsh2	55281769	A	G	SNV	Mutect2;Vardict	2	0.131	36	0	0	NA	exonic	Ppp2r3c	synonymous SNV	Ppp2r3c:NM_021529:exon14:c.T1210C:p.L404L	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	1	0.9566162	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr12	56718313	12A2p6	cell line	sgMsh2	56718313	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	84	0	0	NA	exonic	Slc25a21	synonymous SNV	"Slc25a21:NM_172577:exon8:c.C609A:p.T203T,Slc25a21:NM_001167976:exon9:c.C630A:p.T210T"	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999872	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	59016937	12A2p6	cell line	sgMsh2	59016937	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	155	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon3:c.294delT:p.S100Qfs*72	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr12	61843818	12A2p6	cell line	sgMsh2	61843818	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	67	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.C1892T:p.P631L,Lrfn5:NM_178714:exon4:c.C1892T:p.P631L"	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	64957602	12A2p6	cell line	sgMsh2	64957602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	174	0	0	NA	exonic	Klhl28	nonsynonymous SNV	Klhl28:NM_025707:exon2:c.A136G:p.I46V	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	120	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr12	65161578	12A2p6	cell line	sgMsh2	65161578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	184	0	0	NA	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon2:c.A360C:p.K120N	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.78E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	65226601	12A2p6	cell line	sgMsh2	65226601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	334	0	0	NA	exonic	Wdr20rt	synonymous SNV	Wdr20rt:NM_027614:exon1:c.A837G:p.G279G	12qC1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	141	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	123	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	69185215	12A2p6	cell line	sgMsh2	69185215	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	132	0	0	NA	exonic	Mgat2	nonsynonymous SNV	Mgat2:NM_146035:exon1:c.C562T:p.P188S	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.271252108	3	0.9991383	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	69607304	12A2p6	cell line	sgMsh2	69607304	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.154	132	0	0	NA	exonic	Sos2	frameshift deletion	Sos2:NM_001135559:exon14:c.2270delC:p.P757Hfs*18	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr12	69607335	12A2p6	cell line	sgMsh2	69607335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	129	0	0	NA	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon14:c.A2239G:p.S747G	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9999963	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	69740987	12A2p6	cell line	sgMsh2	69740987	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	90	0	0	NA	exonic	Dmac2l	nonsynonymous SNV	"Dmac2l:NM_001361691:exon3:c.G196T:p.G66C,Dmac2l:NM_026536:exon3:c.G196T:p.G66C,Dmac2l:NM_001361690:exon4:c.G196T:p.G66C"	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	69818044	12A2p6	cell line	sgMsh2	69818044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	268	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1863C:p.K621N	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	70897432	12A2p6	cell line	sgMsh2	70897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	153	0	0	NA	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon13:c.A1583G:p.Q528R	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	71086518	12A2p6	cell line	sgMsh2	71086518	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.203	136	0	0	NA	exonic	Arid4a	nonsynonymous SNV	Arid4a:NM_001081195:exon22:c.A3392G:p.K1131R	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	71121913	12A2p6	cell line	sgMsh2	71121913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	182	0	0	NA	exonic	Tomm20l	synonymous SNV	Tomm20l:NM_029227:exon4:c.T312C:p.C104C	12qC2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.95E-09	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	72304133	12A2p6	cell line	sgMsh2	72304133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	47	0	0	NA	exonic	Rtn1	nonsynonymous SNV	Rtn1:NM_153457:exon3:c.T1301A:p.F434Y	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	72477207	12A2p6	cell line	sgMsh2	72477207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	174	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon18:c.A2186G:p.N729S,Lrrc9:NM_030070:exon18:c.A2189G:p.N730S"	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	1	0.9999321	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	76025625	12A2p6	cell line	sgMsh2	76025625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	172	0	0	NA	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon71:c.A13452G:p.E4484E	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.51E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr12	76329094	12A2p6	cell line	sgMsh2	76329094	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.147	632	0	0	NA	exonic	Akap5	synonymous SNV	Akap5:NM_001101471:exon2:c.T1278C:p.A426A	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr12	76329312	12A2p6	cell line	sgMsh2	76329312	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	505	0	0	NA	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.C1496T:p.A499V	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	76404802	12A2p6	cell line	sgMsh2	76404802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	115	0	0	NA	exonic	Hspa2	nonsynonymous SNV	"Hspa2:NM_008301:exon1:c.A269G:p.H90R,Hspa2:NM_001002012:exon2:c.A269G:p.H90R"	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	76564382	12A2p6	cell line	sgMsh2	76564382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	140	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon6:c.T692C:p.V231A	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	78845245	12A2p6	cell line	sgMsh2	78845245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	156	0	0	NA	exonic	Atp6v1d	nonsynonymous SNV	Atp6v1d:NM_023721:exon8:c.G583A:p.E195K	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.719407765	2	0.6365625	TCT	nonsynonymous	CT	9	CTCTCTCTC	NA
SSC_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	139	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9998244	TCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	159	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.86E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	81734093	12A2p6	cell line	sgMsh2	81734093	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	150	0	0	NA	exonic	Map3k9	nonsynonymous SNV	"Map3k9:NM_001174107:exon5:c.G1292T:p.R431M,Map3k9:NM_177395:exon5:c.G1292T:p.R431M"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.22E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	83555047	12A2p6	cell line	sgMsh2	83555047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	230	0	0	NA	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon5:c.T286C:p.C96R,Zfyve1:NM_001359166:exon8:c.T1531C:p.C511R,Zfyve1:NM_183154:exon8:c.T1531C:p.C511R,Zfyve1:NM_001359167:exon9:c.T1531C:p.C511R"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	84126991	12A2p6	cell line	sgMsh2	84126991	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	80	0	0	NA	exonic	Dnal1	frameshift deletion	"Dnal1:NM_001346528:exon4:c.65delA:p.I24Lfs*3,Dnal1:NM_028821:exon4:c.182delA:p.I63Lfs*3"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr12	84332944	12A2p6	cell line	sgMsh2	84332944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	76	0	0	NA	exonic	Zfp410	nonsynonymous SNV	"Zfp410:NM_001252582:exon8:c.C923A:p.P308H,Zfp410:NM_001252583:exon8:c.C923A:p.P308H,Zfp410:NM_144833:exon8:c.C923A:p.P308H"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	84356325	12A2p6	cell line	sgMsh2	84356325	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	52	0	0	NA	exonic	Fam161b	nonsynonymous SNV	"Fam161b:NM_001358283:exon3:c.G530A:p.R177H,Fam161b:NM_172581:exon3:c.G530A:p.R177H"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.577884926	2	0.78032	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	84592218	12A2p6	cell line	sgMsh2	84592218	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	68	0	0	NA	exonic	Vsx2	stopgain	"Vsx2:NM_001301427:exon4:c.C627A:p.C209X,Vsx2:NM_007701:exon4:c.C627A:p.C209X"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.636852776	2	0.7100685	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	84920789	12A2p6	cell line	sgMsh2	84920789	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	101	0	0	NA	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon18:c.T2260C:p.F754L,Arel1:NM_001364189:exon19:c.T2260C:p.F754L,Arel1:NM_178065:exon19:c.T2260C:p.F754L"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	85235703	12A2p6	cell line	sgMsh2	85235703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	133	0	0	NA	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon12:c.C4155A:p.R1385R,Mlh3:NM_175337:exon12:c.C4155A:p.R1385R"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TGC	synonymous	NA	NA	NA	NA
SSC_p20	chr12	85237598	12A2p6	cell line	sgMsh2	85237598	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	119	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon11:c.T4045A:p.S1349T,Mlh3:NM_175337:exon11:c.T4045A:p.S1349T"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.371497453	2	0.8872303	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	85268127	12A2p6	cell line	sgMsh2	85268127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	217	0	0	NA	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon2:c.T1284A:p.P428P,Mlh3:NM_175337:exon2:c.T1284A:p.P428P"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	85269125	12A2p6	cell line	sgMsh2	85269125	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	234	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.G286T:p.A96S,Mlh3:NM_175337:exon2:c.G286T:p.A96S"	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	85290268	12A2p6	cell line	sgMsh2	85290268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon2:c.A698G:p.K233R	12qD1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	85783013	12A2p6	cell line	sgMsh2	85783013	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	112	0	0	NA	exonic	Flvcr2	frameshift deletion	Flvcr2:NM_145447:exon2:c.795delC:p.P266Rfs*13	12qD2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
SSC_p20	chr12	85876550	12A2p6	cell line	sgMsh2	85876550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	168	0	0	NA	exonic	Ttll5	nonsynonymous SNV	"Ttll5:NM_001364628:exon9:c.T284C:p.L95P,Ttll5:NM_001081423:exon10:c.T800C:p.L267P,Ttll5:NM_001347395:exon10:c.T800C:p.L267P,Ttll5:NM_001364624:exon10:c.T800C:p.L267P,Ttll5:NM_001364625:exon10:c.T800C:p.L267P,Ttll5:NM_001364626:exon10:c.T800C:p.L267P,Ttll5:NM_001364627:exon10:c.T506C:p.L169P"	12qD2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	86111625	12A2p6	cell line	sgMsh2	86111625	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	80	0	0	NA	exonic	Ift43	nonsynonymous SNV	"Ift43:NM_001199843:exon3:c.A162C:p.K54N,Ift43:NM_029601:exon3:c.A162C:p.K54N"	12qD2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	87369043	12A2p6	cell line	sgMsh2	87369043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	174	0	0	NA	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon2:c.T209C:p.V70A	12qD2	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.9999819	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	91299010	12A2p6	cell line	sgMsh2	91299010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	255	0	0	NA	exonic	Cep128	nonsynonymous SNV	Cep128:NM_181815:exon11:c.G827A:p.S276N	12qD3	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	98763954	12A2p6	cell line	sgMsh2	98763954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	71	0	0	NA	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001364403:exon8:c.G790A:p.G264R,Zc3h14:NM_001364404:exon8:c.G790A:p.G264R,Zc3h14:NM_001364405:exon8:c.G790A:p.G264R,Zc3h14:NM_001008506:exon9:c.G1255A:p.G419R,Zc3h14:NM_001160107:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364400:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364401:exon9:c.G1255A:p.G419R,Zc3h14:NM_001364402:exon9:c.G1255A:p.G419R,Zc3h14:NM_029334:exon9:c.G1255A:p.G419R"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.672233486	1	0.5016503	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	98873139	12A2p6	cell line	sgMsh2	98873139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	exonic	Eml5	nonsynonymous SNV	Eml5:NM_001081191:exon7:c.T914C:p.I305T	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	AAT	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr12	99388707	12A2p6	cell line	sgMsh2	99388707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	exonic	Foxn3	nonsynonymous SNV	Foxn3:NM_183186:exon2:c.T197C:p.L66P	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	100850195	12A2p6	cell line	sgMsh2	100850195	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	200	0	0	NA	exonic	Dglucy	synonymous SNV	"Dglucy:NM_001361023:exon7:c.C666T:p.L222L,Dglucy:NM_145448:exon8:c.C1005T:p.L335L,Dglucy:NM_001361020:exon9:c.C1005T:p.L335L,Dglucy:NM_001361017:exon10:c.C1095T:p.L365L"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9999996	TCG	synonymous	NA	NA	NA	NA
SSC_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	62	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
SSC_p20	chr12	101706587	12A2p6	cell line	sgMsh2	101706587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	91	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon3:c.T94C:p.S32P,Tc2n:NM_028924:exon3:c.T94C:p.S32P"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	101934360	12A2p6	cell line	sgMsh2	101934360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	115	0	0	NA	exonic	Atxn3	nonsynonymous SNV	"Atxn3:NM_001167914:exon8:c.A663G:p.I221M,Atxn3:NM_029705:exon8:c.A663G:p.I221M"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	140	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.742994905	1	0.7749335	TTC	synonymous	NA	NA	NA	NA
SSC_p20	chr12	102489507	12A2p6	cell line	sgMsh2	102489507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	98	0	0	NA	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon9:c.T1703C:p.L568P,Golga5:NM_013747:exon9:c.T1703C:p.L568P"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999967	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	102840181	12A2p6	cell line	sgMsh2	102840181	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	75	0	0	NA	exonic	Btbd7	frameshift deletion	"Btbd7:NM_001377026:exon2:c.1delA:p.M1Wfs*15,Btbd7:NM_172806:exon3:c.1delA:p.M1Wfs*15"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr12	103095083	12A2p6	cell line	sgMsh2	103095083	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	147	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon26:c.C3700A:p.P1234T	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	103338143	12A2p6	cell line	sgMsh2	103338143	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	124	0	0	NA	exonic	Asb2	nonsynonymous SNV	"Asb2:NM_001374764:exon1:c.C101A:p.P34H,Asb2:NM_023049:exon3:c.C245A:p.P82H"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	103419367	12A2p6	cell line	sgMsh2	103419367	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	175	0	0	NA	exonic	Ddx24	nonsynonymous SNV	"Ddx24:NM_001159502:exon3:c.T976G:p.F326V,Ddx24:NM_001364162:exon3:c.T838G:p.F280V,Ddx24:NM_001364163:exon3:c.T838G:p.F280V,Ddx24:NM_020494:exon3:c.T838G:p.F280V"	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.524813862	2	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.187	84	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
SSC_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	108898193	12A2p6	cell line	sgMsh2	108898193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	71	0	0	NA	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.T263C:p.L88P	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9997474	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	110666605	12A2p6	cell line	sgMsh2	110666605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	122	0	0	NA	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon77:c.A13849G:p.I4617V	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	111302031	12A2p6	cell line	sgMsh2	111302031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon28:c.T3734C:p.L1245P	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	111710911	12A2p6	cell line	sgMsh2	111710911	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	204	0	0	NA	exonic	Bag5	synonymous SNV	"Bag5:NM_001324480:exon2:c.A477T:p.V159V,Bag5:NM_001324481:exon2:c.A477T:p.V159V,Bag5:NM_001324482:exon2:c.A477T:p.V159V,Bag5:NM_027404:exon2:c.A477T:p.V159V"	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.11E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr12	111772323	12A2p6	cell line	sgMsh2	111772323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	117	0	0	NA	exonic	Klc1	nonsynonymous SNV	"Klc1:NM_001025358:exon2:c.T4C:p.Y2H,Klc1:NM_001025359:exon2:c.T4C:p.Y2H,Klc1:NM_001025360:exon2:c.T4C:p.Y2H,Klc1:NM_001025361:exon2:c.T4C:p.Y2H,Klc1:NM_001025362:exon2:c.T4C:p.Y2H,Klc1:NM_001025363:exon2:c.T4C:p.Y2H,Klc1:NM_001081959:exon2:c.T4C:p.Y2H,Klc1:NM_001361605:exon2:c.T4C:p.Y2H,Klc1:NM_001361609:exon2:c.T4C:p.Y2H,Klc1:NM_001361610:exon2:c.T4C:p.Y2H,Klc1:NM_001361611:exon2:c.T4C:p.Y2H,Klc1:NM_001361612:exon2:c.T4C:p.Y2H,Klc1:NM_001361613:exon2:c.T4C:p.Y2H,Klc1:NM_001361614:exon2:c.T4C:p.Y2H,Klc1:NM_008450:exon2:c.T4C:p.Y2H"	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	74	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	151	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	112620213	12A2p6	cell line	sgMsh2	112620213	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.2	15	0	0	NA	exonic	Adssl1	nonsynonymous SNV	Adssl1:NM_007421:exon1:c.G95T:p.R32L	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9898095	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	232	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr12	113157677	12A2p6	cell line	sgMsh2	113157677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	104	0	0	NA	exonic	Tedc1	nonsynonymous SNV	Tedc1:NM_134041:exon4:c.T517C:p.W173R	12qF1	chr12-3501831-114367242	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-116094430-119465464	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
SSC_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	213	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-116094430-119465464	6	5	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr13	3941251	12A2p6	cell line	sgMsh2	3941251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	113	0	0	NA	exonic	Ucn3	nonsynonymous SNV	Ucn3:NM_031250:exon2:c.A400G:p.M134V	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	6581585	12A2p6	cell line	sgMsh2	6581585	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	67	0	0	NA	exonic	Pfkp	nonsynonymous SNV	"Pfkp:NM_001291071:exon22:c.A2230G:p.I744V,Pfkp:NM_019703:exon22:c.A2230G:p.I744V"	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	6614712	12A2p6	cell line	sgMsh2	6614712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	150	0	0	NA	exonic	Pfkp	nonsynonymous SNV	"Pfkp:NM_001291071:exon8:c.A859G:p.I287V,Pfkp:NM_019703:exon8:c.A859G:p.I287V"	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	9662244	12A2p6	cell line	sgMsh2	9662244	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	118	0	0	NA	exonic	Dip2c	frameshift deletion	Dip2c:NM_001081426:exon36:c.4402delA:p.S1469Vfs*13	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr13	11790274	12A2p6	cell line	sgMsh2	11790274	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	105	0	0	NA	exonic	Ryr2	synonymous SNV	Ryr2:NM_023868:exon23:c.C2703A:p.G901G	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999983	AGC	synonymous	GCCA	8	GCCAGCCA	NA
SSC_p20	chr13	12434499	12A2p6	cell line	sgMsh2	12434499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	114	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon41:c.A5877G:p.K1959K	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr13	13002264	12A2p6	cell line	sgMsh2	13002264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	137	0	0	NA	exonic	Prl2c2	nonsynonymous SNV	Prl2c2:NM_031191:exon2:c.A77C:p.N26T	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	13775544	12A2p6	cell line	sgMsh2	13775544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	56	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon51:c.A11071G:p.I3691V	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	14248417	12A2p6	cell line	sgMsh2	14248417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	64	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon24:c.G4039T:p.G1347C	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999112	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	14637527	12A2p6	cell line	sgMsh2	14637527	-	GA	Insertion	Strelka2;Vardict	2	0.25	96	0	0	NA	exonic	AW209491	frameshift insertion	"AW209491:NM_001104646:exon2:c.964_965insGA:p.A327Gfs*4,AW209491:NM_134067:exon2:c.964_965insGA:p.A327Gfs*4"	13qA1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GGG	frameshift	GA	13	GAGAGAGAGAGAG	2
SSC_p20	chr13	17695488	12A2p6	cell line	sgMsh2	17695488	C	T	SNV	Mutect2;MuSe	2	0.3	8	0	0	NA	exonic	Mplkip	nonsynonymous SNV	Mplkip:NM_025479:exon1:c.C4T:p.H2Y	13qA2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9797701	GCA	nonsynonymous	ACCG	9	ACCGACCGA	NA
SSC_p20	chr13	21787561	12A2p6	cell line	sgMsh2	21787561	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	177	0	0	NA	exonic	H2bc22	nonsynonymous SNV	"H2bc22:NM_001290466:exon1:c.A47C:p.K16T,H2bc22:NM_178202:exon1:c.A47C:p.K16T"	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.55E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	23011710	12A2p6	cell line	sgMsh2	23011710	T	-	Deletion	Mutect2;Vardict	2	0.034	376	0	0	NA	exonic	Vmn1r213	frameshift deletion	Vmn1r213:NM_134215:exon1:c.462delT:p.F155Lfs*2	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.200490689	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr13	23482748	12A2p6	cell line	sgMsh2	23482748	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	71	0	0	NA	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon4:c.A686T:p.Q229L,Btn2a2:NM_001289615:exon4:c.A686T:p.Q229L,Btn2a2:NM_175938:exon4:c.A686T:p.Q229L"	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	23934081	12A2p6	cell line	sgMsh2	23934081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	106	0	0	NA	exonic	H2bc1	nonsynonymous SNV	H2bc1:NM_175663:exon1:c.A76G:p.K26E	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999985	TTT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr13	24069691	12A2p6	cell line	sgMsh2	24069691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon27:c.G2444A:p.R815H,Carmil1:NM_001384122:exon27:c.G2444A:p.R815H,Carmil1:NM_026825:exon28:c.G2456A:p.R819H"	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	24073941	12A2p6	cell line	sgMsh2	24073941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	79	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon26:c.A2327C:p.K776T,Carmil1:NM_001384122:exon26:c.A2327C:p.K776T,Carmil1:NM_026825:exon27:c.A2339C:p.K780T"	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	24137141	12A2p6	cell line	sgMsh2	24137141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	161	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon11:c.T870G:p.D290E,Carmil1:NM_001384122:exon11:c.T870G:p.D290E,Carmil1:NM_026825:exon11:c.T870G:p.D290E"	13qA3.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	8.29E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	32806806	12A2p6	cell line	sgMsh2	32806806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	33	0	0	NA	exonic	Wrnip1	synonymous SNV	Wrnip1:NM_030215:exon3:c.T1047C:p.G349G	13qA3.2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9982077	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr13	33332229	12A2p6	cell line	sgMsh2	33332229	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	26	0	0	NA	exonic	Serpinb9f	frameshift deletion	Serpinb9f:NM_183197:exon6:c.678delT:p.L227fs*0	13qA3.3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	12	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9863861	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	61	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	41135198	12A2p6	cell line	sgMsh2	41135198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	57	0	0	NA	exonic	Sycp2l	nonsynonymous SNV	Sycp2l:NM_001324525:exon8:c.A725G:p.N242S	13qA3.3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998249	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	43554991	12A2p6	cell line	sgMsh2	43554991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	56	0	0	NA	exonic	Mcur1	nonsynonymous SNV	Mcur1:NM_001081059:exon2:c.A383G:p.H128R	13qA4	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	44902585	12A2p6	cell line	sgMsh2	44902585	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.526	38	0	0	NA	exonic	Jarid2	frameshift deletion	"Jarid2:NM_001360281:exon6:c.750delG:p.R253Gfs*1,Jarid2:NM_001205043:exon7:c.1266delG:p.R425Gfs*1,Jarid2:NM_001205044:exon8:c.1266delG:p.R425Gfs*1,Jarid2:NM_021878:exon8:c.1266delG:p.R425Gfs*1"	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr13	45520960	12A2p6	cell line	sgMsh2	45520960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	74	0	0	NA	exonic	Gmpr	nonsynonymous SNV	Gmpr:NM_025508:exon4:c.T400C:p.Y134H	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	46778973	12A2p6	cell line	sgMsh2	46778973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	145	0	0	NA	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon26:c.A3243T:p.V1081V	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	TTA	synonymous	TC	9	TCTCTCTCT	NA
SSC_p20	chr13	48826109	12A2p6	cell line	sgMsh2	48826109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	73	0	0	NA	exonic	Phf2	nonsynonymous SNV	Phf2:NM_011078:exon5:c.A545G:p.Y182C	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	48889928	12A2p6	cell line	sgMsh2	48889928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	20	0	0	NA	exonic	Fam120a	nonsynonymous SNV	Fam120a:NM_001033268:exon14:c.C2489T:p.A830V	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9937046	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	49057244	12A2p6	cell line	sgMsh2	49057244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	63	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon23:c.T5134C:p.Y1712H,Wnk2:NM_001290313:exon23:c.T5134C:p.Y1712H,Wnk2:NM_029361:exon23:c.T5134C:p.Y1712H"	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	49446385	12A2p6	cell line	sgMsh2	49446385	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	83	0	0	NA	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon9:c.T866G:p.F289C,Ippk:NM_199056:exon9:c.T719G:p.F240C"	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	TTC	nonsynonymous	CTT	10	CTTCTTCTTC	NA
SSC_p20	chr13	49464769	12A2p6	cell line	sgMsh2	49464769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	90	0	0	NA	exonic	Cenpp	nonsynonymous SNV	Cenpp:NM_025495:exon7:c.T659C:p.V220A	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	49715706	12A2p6	cell line	sgMsh2	49715706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	133	0	0	NA	exonic	Iars	synonymous SNV	Iars:NM_172015:exon19:c.T1893C:p.P631P	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr13	49732431	12A2p6	cell line	sgMsh2	49732431	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	74	0	0	NA	exonic	Iars	synonymous SNV	Iars:NM_172015:exon33:c.C3645A:p.A1215A	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	CCA	synonymous	NA	NA	NA	NA
SSC_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	72	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.4	40	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC_p20	chr13	55828462	12A2p6	cell line	sgMsh2	55828462	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	29	0	0	NA	exonic	Pitx1	nonsynonymous SNV	Pitx1:NM_011097:exon2:c.A383C:p.N128T	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9973605	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	56083249	12A2p6	cell line	sgMsh2	56083249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	75	0	0	NA	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon8:c.A821G:p.H274R,Macroh2a1:NM_001159514:exon8:c.A815G:p.H272R,Macroh2a1:NM_001159515:exon8:c.A812G:p.H271R,Macroh2a1:NM_012015:exon8:c.A824G:p.H275R"	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	56104303	12A2p6	cell line	sgMsh2	56104303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	119	0	0	NA	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159514:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159515:exon4:c.A476G:p.K159R,Macroh2a1:NM_012015:exon4:c.A476G:p.K159R"	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	56804540	12A2p6	cell line	sgMsh2	56804540	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	89	0	0	NA	exonic	Trpc7	nonsynonymous SNV	"Trpc7:NM_001302372:exon7:c.G1817A:p.G606D,Trpc7:NM_012035:exon7:c.G1817A:p.G606D,Trpc7:NM_001302373:exon8:c.G662A:p.G221D"	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	58238650	12A2p6	cell line	sgMsh2	58238650	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	63	0	0	NA	exonic	Gkap1	synonymous SNV	Gkap1:NM_019832:exon9:c.G903A:p.E301E	13qB1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	TCT	synonymous	NA	NA	NA	NA
SSC_p20	chr13	59782315	12A2p6	cell line	sgMsh2	59782315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	90	0	0	NA	exonic	Tut7	nonsynonymous SNV	"Tut7:NM_001373962:exon26:c.A4111G:p.T1371A,Tut7:NM_001373963:exon26:c.A4111G:p.T1371A,Tut7:NM_001373964:exon26:c.A4111G:p.T1371A,Tut7:NM_153538:exon26:c.A4111G:p.T1371A"	13qB2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	59816801	12A2p6	cell line	sgMsh2	59816801	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	81	0	0	NA	exonic	Tut7	nonsynonymous SNV	"Tut7:NM_001373962:exon3:c.A559T:p.R187W,Tut7:NM_001373963:exon3:c.A559T:p.R187W,Tut7:NM_001373964:exon3:c.A559T:p.R187W,Tut7:NM_153538:exon3:c.A559T:p.R187W"	13qB2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.300736033	3	0.924587	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	60729528	12A2p6	cell line	sgMsh2	60729528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	76	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon16:c.T1580C:p.V527A,Dapk1:NM_029653:exon16:c.T1580C:p.V527A,Dapk1:NM_134062:exon16:c.T1580C:p.V527A"	13qB2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	61197629	12A2p6	cell line	sgMsh2	61197629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	94	0	0	NA	exonic	Cts6	nonsynonymous SNV	Cts6:NM_021445:exon6:c.A653C:p.N218T	13qB2	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999952	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	63033045	12A2p6	cell line	sgMsh2	63033045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	91	0	0	NA	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon3:c.T820C:p.S274P,Aopep:NM_001289926:exon3:c.T820C:p.S274P"	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	ATC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr13	64794243	12A2p6	cell line	sgMsh2	64794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	88	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon5:c.A672G:p.I224M	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999913	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	129	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAG	frameshift	NA	NA	NA	-1
SSC_p20	chr13	70592640	12A2p6	cell line	sgMsh2	70592640	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.364	118	0	0	NA	exonic	Ice1	frameshift deletion	Ice1:NM_144837:exon18:c.6447delG:p.P2151Qfs*3	13qC1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
SSC_p20	chr13	70614966	12A2p6	cell line	sgMsh2	70614966	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.064	110	0	0	NA	exonic	Ice1	frameshift deletion	Ice1:NM_144837:exon10:c.568delA:p.I190Sfs*8	13qC1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.377394238	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr13	77259933	12A2p6	cell line	sgMsh2	77259933	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.238	65	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon7:c.C1320A:p.S440S	13qC1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999194	CCA	synonymous	NA	NA	NA	NA
SSC_p20	chr13	77761927	12A2p6	cell line	sgMsh2	77761927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.624	39	0	0	NA	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163419:exon3:c.G160A:p.A54T,Fam172a:NM_001163420:exon3:c.G160A:p.A54T,Fam172a:NM_138312:exon4:c.G298A:p.A100T"	13qC1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9989976	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	81479769	12A2p6	cell line	sgMsh2	81479769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	94	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon53:c.C10972T:p.L3658L	13qC3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr13	81523753	12A2p6	cell line	sgMsh2	81523753	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	100	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon31:c.A6722C:p.E2241A	13qC3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	84294754	12A2p6	cell line	sgMsh2	84294754	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	91	0	0	NA	exonic	Tmem161b	frameshift deletion	"Tmem161b:NM_001361908:exon11:c.957delA:p.N321Tfs*14,Tmem161b:NM_001361909:exon11:c.792delA:p.N266Tfs*14,Tmem161b:NM_001361911:exon12:c.792delA:p.N266Tfs*14,Tmem161b:NM_175187:exon12:c.1338delA:p.N448Tfs*14"	13qC3	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr13	95707884	12A2p6	cell line	sgMsh2	95707884	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.322	156	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1515C:p.K505N	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	95707886	12A2p6	cell line	sgMsh2	95707886	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.322	156	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1513C:p.K505Q	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	95716096	12A2p6	cell line	sgMsh2	95716096	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	77	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon12:c.A1318T:p.I440F	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999748	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	95716136	12A2p6	cell line	sgMsh2	95716136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	79	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon12:c.A1278G:p.Q426Q	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr13	96616459	12A2p6	cell line	sgMsh2	96616459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	107	0	0	NA	exonic	Cert1	synonymous SNV	"Cert1:NM_001164222:exon10:c.A1020G:p.S340S,Cert1:NM_023420:exon10:c.A1020G:p.S340S"	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr13	96634855	12A2p6	cell line	sgMsh2	96634855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	132	0	0	NA	exonic	Cert1	nonsynonymous SNV	"Cert1:NM_001164222:exon15:c.T1541C:p.L514P,Cert1:NM_023420:exon16:c.T1619C:p.L540P"	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	97961393	12A2p6	cell line	sgMsh2	97961393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	81	0	0	NA	exonic	Arhgef28	synonymous SNV	Arhgef28:NM_012026:exon22:c.C2712T:p.F904F	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	AGA	synonymous	GAA	10	GAAGAAGAAG	NA
SSC_p20	chr13	98748220	12A2p6	cell line	sgMsh2	98748220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	68	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon17:c.A1338G:p.S446S	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999397	ATG	synonymous	GAT	8	GATGATGA	NA
SSC_p20	chr13	100061007	12A2p6	cell line	sgMsh2	100061007	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	143	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A2869T:p.I957F	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	100803340	12A2p6	cell line	sgMsh2	100803340	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	67	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2237C:p.K746T	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	100803403	12A2p6	cell line	sgMsh2	100803403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	72	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2174C:p.E725A	13qD1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999591	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	110061816	12A2p6	cell line	sgMsh2	110061816	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	22	0	0	NA	exonic	Rab3c	stoploss	"Rab3c:NM_001360099:exon5:c.A677C:p.X226S,Rab3c:NM_023852:exon5:c.A683C:p.X228S"	13qD2.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.994809	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr13	110399390	12A2p6	cell line	sgMsh2	110399390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	182	0	0	NA	exonic	Plk2	nonsynonymous SNV	Plk2:NM_152804:exon12:c.T1627C:p.Y543H	13qD2.1	chr13-3556297-119495179	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.95E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	12211681	12A2p6	cell line	sgMsh2	12211681	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	82	0	0	NA	exonic	Ptprg	nonsynonymous SNV	"Ptprg:NM_001347593:exon7:c.G637T:p.V213F,Ptprg:NM_008981:exon20:c.G2962T:p.V988F"	14qA1	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	CGT	nonsynonymous	CCGT	9	CCGTCCGTC	NA
SSC_p20	chr14	12489489	12A2p6	cell line	sgMsh2	12489489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	99	0	0	NA	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon15:c.A2439G:p.S813S,Cadps:NM_001359921:exon15:c.A2439G:p.S813S,Cadps:NM_012061:exon15:c.A2439G:p.S813S,Cadps:NM_001042617:exon16:c.A2451G:p.S817S,Cadps:NM_001359919:exon16:c.A2451G:p.S817S"	14qA1	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	13493535	12A2p6	cell line	sgMsh2	13493535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	103	0	0	NA	exonic	Synpr	nonsynonymous SNV	"Synpr:NM_001163032:exon2:c.T52C:p.C18R,Synpr:NM_028052:exon3:c.T112C:p.C38R"	14qA1	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	16418484	12A2p6	cell line	sgMsh2	16418484	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	72	0	0	NA	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon28:c.A3703T:p.T1235S	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	16423715	12A2p6	cell line	sgMsh2	16423715	A	-	Deletion	Strelka2;Vardict	2	0.1538	52	0	0	NA	exonic	Top2b	frameshift deletion	Top2b:NM_009409:exon32:c.4276delA:p.S1428Vfs*40	14qA2	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.906925527	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr14	19789713	12A2p6	cell line	sgMsh2	19789713	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	92	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon9:c.G2369T:p.S790I	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.359703883	2	0.7143553	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	20409302	12A2p6	cell line	sgMsh2	20409302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	222	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon17:c.A1942G:p.S648G,Cfap70:NM_001163639:exon17:c.A1978G:p.S660G,Cfap70:NM_029698:exon18:c.A2110G:p.S704G"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	20586018	12A2p6	cell line	sgMsh2	20586018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	115	0	0	NA	exonic	Usp54	synonymous SNV	Usp54:NM_030180:exon9:c.T957C:p.D319D	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	CAT	synonymous	CAT	8	CATCATCA	NA
SSC_p20	chr14	20721236	12A2p6	cell line	sgMsh2	20721236	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	59	0	0	NA	exonic	Zswim8	synonymous SNV	"Zswim8:NM_001252081:exon21:c.C4215T:p.Y1405Y,Zswim8:NM_027996:exon21:c.C4236T:p.Y1412Y,Zswim8:NM_001252082:exon22:c.C4134T:p.Y1378Y"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	ACC	synonymous	NA	NA	NA	NA
SSC_p20	chr14	20729830	12A2p6	cell line	sgMsh2	20729830	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	177	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.G341T:p.S114I	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.55E-09	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	21664671	12A2p6	cell line	sgMsh2	21664671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	67	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon16:c.A2672G:p.Q891R,Kat6b:NM_017479:exon16:c.A2672G:p.Q891R"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	21668379	12A2p6	cell line	sgMsh2	21668379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	139	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon17:c.A2798G:p.N933S,Kat6b:NM_017479:exon17:c.A2798G:p.N933S"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	21837886	12A2p6	cell line	sgMsh2	21837886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	269	0	0	NA	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon5:c.T296C:p.I99T	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	21847322	12A2p6	cell line	sgMsh2	21847322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	73	0	0	NA	exonic	Comtd1	nonsynonymous SNV	Comtd1:NM_026965:exon7:c.A742G:p.S248G	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Strelka2;Vardict	2	0.16	125	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	111	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	25651309	12A2p6	cell line	sgMsh2	25651309	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	61	0	0	NA	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon14:c.C1585T:p.P529S,Zmiz1:NM_183208:exon14:c.C1603T:p.P535S"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	26422496	12A2p6	cell line	sgMsh2	26422496	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	202	0	0	NA	exonic	Slmap	nonsynonymous SNV	"Slmap:NM_001347494:exon18:c.A2070C:p.Q690H,Slmap:NM_032008:exon20:c.A2172C:p.Q724H,Slmap:NM_001310445:exon21:c.A2235C:p.Q745H"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.14E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	27472387	12A2p6	cell line	sgMsh2	27472387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	142	0	0	NA	exonic	Tasor	synonymous SNV	"Tasor:NM_001114879:exon18:c.T3543C:p.D1181D,Tasor:NM_028945:exon18:c.T3543C:p.D1181D"	14qA3	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	69	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC_p20	chr14	30559770	12A2p6	cell line	sgMsh2	30559770	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	45	0	0	NA	exonic	Tkt	synonymous SNV	Tkt:NM_009388:exon3:c.T244C:p.L82L	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.70171741	1	0.8478275	TTT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	86	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	138	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	31163844	12A2p6	cell line	sgMsh2	31163844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	86	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon2:c.T172C:p.W58R	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999895	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	166	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr14	32177268	12A2p6	cell line	sgMsh2	32177268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	202	0	0	NA	exonic	Ncoa4	synonymous SNV	"Ncoa4:NM_001033988:exon9:c.T1767C:p.R589R,Ncoa4:NM_001284319:exon9:c.T1482C:p.R494R,Ncoa4:NM_019744:exon9:c.T1767C:p.R589R"	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.14E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	56	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	32661078	12A2p6	cell line	sgMsh2	32661078	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	128	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.G2929T:p.G977W	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	35323401	12A2p6	cell line	sgMsh2	35323401	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	139	0	0	NA	exonic	Grid1	synonymous SNV	Grid1:NM_008166:exon8:c.C1200A:p.T400T	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	95	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	37081391	12A2p6	cell line	sgMsh2	37081391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Cdhr1	nonsynonymous SNV	Cdhr1:NM_130878:exon15:c.A1727G:p.Q576R	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	CTG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	60	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7548571-41174827	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998691	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	43962658	12A2p6	cell line	sgMsh2	43962658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	217	0	0	NA	exonic	Ang3;Ang5	nonsynonymous SNV	"Ang5:NM_007448:exon2:c.A178G:p.T60A,Ang3:NM_001123394:exon3:c.A178G:p.T60A"	14qC1	chr14-41175317-44725265	8	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	1.03E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	44989291	12A2p6	cell line	sgMsh2	44989291	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	232	0	0	NA	exonic	Ptger2	synonymous SNV	Ptger2:NM_008964:exon1:c.G327T:p.A109A	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	CGT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	47395849	12A2p6	cell line	sgMsh2	47395849	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	121	0	0	NA	exonic	Dlgap5	synonymous SNV	Dlgap5:NM_144553:exon14:c.C1719T:p.A573A	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.625059206	2	0.9904395	GGG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	47548957	12A2p6	cell line	sgMsh2	47548957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	82	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon6:c.A839G:p.Y280C	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999845	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	139	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.501	51	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
SSC_p20	chr14	50034672	12A2p6	cell line	sgMsh2	50034672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	205	0	0	NA	exonic	Olfr725	nonsynonymous SNV	Olfr725:NM_146317:exon1:c.A730G:p.I244V	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.10E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50127283	12A2p6	cell line	sgMsh2	50127283	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.219	342	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.G705T:p.K235N	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50281451	12A2p6	cell line	sgMsh2	50281451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	187	0	0	NA	exonic	Olfr732	synonymous SNV	Olfr732:NM_146665:exon1:c.T801C:p.A267A	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.59E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	50361509	12A2p6	cell line	sgMsh2	50361509	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	197	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.A951T:p.K317N	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.22E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50361523	12A2p6	cell line	sgMsh2	50361523	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	208	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.T965G:p.L322R	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50413620	12A2p6	cell line	sgMsh2	50413620	G	T	SNV	Mutect2;Vardict	2	0.023	316	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.G75T:p.K25N	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.135626054	3	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	99	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50843777	12A2p6	cell line	sgMsh2	50843777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	95	0	0	NA	exonic	Tep1	nonsynonymous SNV	Tep1:NM_009351:exon27:c.A4003G:p.R1335G	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999956	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	CGT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	51049874	12A2p6	cell line	sgMsh2	51049874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	178	0	0	NA	exonic	Rnase11	synonymous SNV	Rnase11:NM_001011877:exon1:c.A222G:p.L74L	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.40E-09	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr14	51130482	12A2p6	cell line	sgMsh2	51130482	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	158	0	0	NA	exonic	Rnase6	synonymous SNV	"Rnase6:NM_030098:exon2:c.T330G:p.T110T,Rnase6:NM_001360117:exon3:c.T330G:p.T110T"	14qC1	chr14-44852972-51146171	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-08	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	51895031	12A2p6	cell line	sgMsh2	51895031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	115	0	0	NA	exonic	Slc39a2	nonsynonymous SNV	Slc39a2:NM_001039676:exon4:c.A430G:p.T144A	14qC1	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	GAC	nonsynonymous	GGGA	8	GGGAGGGA	NA
SSC_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999591	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	169	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.36E-09	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
SSC_p20	chr14	52206853	12A2p6	cell line	sgMsh2	52206853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	65	0	0	NA	exonic	Chd8	synonymous SNV	Chd8:NM_201637:exon30:c.A5394G:p.Q1798Q	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999194	GTT	synonymous	GTT	9	GTTGTTGTT	NA
SSC_p20	chr14	52300184	12A2p6	cell line	sgMsh2	52300184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	167	0	0	NA	exonic	Mettl3	synonymous SNV	Mettl3:NM_019721:exon2:c.G318A:p.T106T	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.08E-09	CCG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	52463354	12A2p6	cell line	sgMsh2	52463354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	249	0	0	NA	exonic	Olfr1508	synonymous SNV	Olfr1508:NM_020513:exon2:c.A654G:p.V218V	14qC2	chr14-51886599-53079320	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr14	54242847	12A2p6	cell line	sgMsh2	54242847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	0	0	NA	exonic	Dad1	nonsynonymous SNV	"Dad1:NM_001113358:exon2:c.A233C:p.N78T,Dad1:NM_010015:exon2:c.A233C:p.N78T"	14qC2	chr14-53336808-54463438	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	GTT	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	89	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	54897220	12A2p6	cell line	sgMsh2	54897220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	262	0	0	NA	exonic	Pabpn1	stopgain	Pabpn1:NM_019402:exon6:c.C817T:p.R273X	14qC2	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55074365	12A2p6	cell line	sgMsh2	55074365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	82	0	0	NA	exonic;splicing	Zfhx2;Zfhx2os	nonsynonymous SNV	Zfhx2:NM_001039198:exon2:c.A871G:p.T291A	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55234740	12A2p6	cell line	sgMsh2	55234740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	138	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.G87A:p.A29A	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CGG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	55565805	12A2p6	cell line	sgMsh2	55565805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	120	0	0	NA	exonic	Dcaf11	nonsynonymous SNV	"Dcaf11:NM_001199009:exon11:c.A1075G:p.T359A,Dcaf11:NM_133734:exon11:c.A1075G:p.T359A"	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55651657	12A2p6	cell line	sgMsh2	55651657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	188	0	0	NA	exonic	Tssk4	synonymous SNV	"Tssk4:NM_001253888:exon3:c.T639C:p.A213A,Tssk4:NM_001253889:exon3:c.T639C:p.A213A,Tssk4:NM_027673:exon3:c.T609C:p.A203A"	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.53E-09	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	55718447	12A2p6	cell line	sgMsh2	55718447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	142	0	0	NA	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.A1352G:p.K451R,Rabggta:NM_001360387:exon14:c.A1352G:p.K451R,Rabggta:NM_001360388:exon14:c.A1352G:p.K451R"	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.71E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	73	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	65	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	55769194	12A2p6	cell line	sgMsh2	55769194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	93	0	0	NA	exonic	Adcy4	nonsynonymous SNV	"Adcy4:NM_001361604:exon26:c.A3181G:p.T1061A,Adcy4:NM_080435:exon26:c.A3181G:p.T1061A"	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	55898376	12A2p6	cell line	sgMsh2	55898376	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	101	0	0	NA	exonic	Sdr39u1	nonsynonymous SNV	"Sdr39u1:NM_001374224:exon4:c.G18C:p.Q6H,Sdr39u1:NM_001082975:exon5:c.G339C:p.Q113H"	14qC3	chr14-54464254-56382941	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	2	0.9942695	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	56487023	12A2p6	cell line	sgMsh2	56487023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	195	0	0	NA	exonic	Rnf17	nonsynonymous SNV	Rnf17:NM_001033043:exon25:c.G3323A:p.R1108H	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.27E-09	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	56503935	12A2p6	cell line	sgMsh2	56503935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	219	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon28:c.T3846C:p.H1282H	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	56620490	12A2p6	cell line	sgMsh2	56620490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	96	0	0	NA	exonic	Parp4	nonsynonymous SNV	Parp4:NM_001145978:exon22:c.G2578A:p.V860I	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	132	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	1	0.9991167	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	56771844	12A2p6	cell line	sgMsh2	56771844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	236	0	0	NA	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon2:c.T532G:p.F178V	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	57597081	12A2p6	cell line	sgMsh2	57597081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	61	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.T2041C:p.Y681H,Xpo4:NM_001368697:exon16:c.T1819C:p.Y607H"	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	116	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr14	60221659	12A2p6	cell line	sgMsh2	60221659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	74	0	0	NA	exonic	Nupl1	synonymous SNV	"Nupl1:NM_001362439:exon14:c.T1518C:p.G506G,Nupl1:NM_001362440:exon14:c.T1518C:p.G506G,Nupl1:NM_170591:exon14:c.T1518C:p.G506G"	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9896796	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr14	60223409	12A2p6	cell line	sgMsh2	60223409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	59	0	0	NA	exonic	Nupl1	nonsynonymous SNV	"Nupl1:NM_001362439:exon13:c.A1406G:p.Q469R,Nupl1:NM_001362440:exon13:c.A1406G:p.Q469R,Nupl1:NM_170591:exon13:c.A1406G:p.Q469R"	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998558	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	62364044	12A2p6	cell line	sgMsh2	62364044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	172	0	0	NA	exonic	Rnaseh2b	nonsynonymous SNV	Rnaseh2b:NM_026001:exon8:c.T622C:p.Y208H	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.51E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	63973377	12A2p6	cell line	sgMsh2	63973377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	97	0	0	NA	exonic	4930578I06Rik	nonsynonymous SNV	4930578I06Rik:NM_026359:exon3:c.A401G:p.E134G	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	64029195	12A2p6	cell line	sgMsh2	64029195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	149	0	0	NA	exonic	Rp1l1	synonymous SNV	Rp1l1:NM_146246:exon4:c.A2229G:p.E743E	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr14	65551437	12A2p6	cell line	sgMsh2	65551437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	87	0	0	NA	exonic	Elp3	nonsynonymous SNV	"Elp3:NM_001253812:exon11:c.A1196G:p.H399R,Elp3:NM_028811:exon11:c.A1139G:p.H380R"	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999905	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	65582934	12A2p6	cell line	sgMsh2	65582934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	63	0	0	NA	exonic	Elp3	synonymous SNV	"Elp3:NM_001253812:exon4:c.A342G:p.K114K,Elp3:NM_028811:exon4:c.A285G:p.K95K"	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	202	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.14E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	66084756	12A2p6	cell line	sgMsh2	66084756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	102	0	0	NA	exonic	Ephx2	nonsynonymous SNV	"Ephx2:NM_001271403:exon18:c.A1537G:p.T513A,Ephx2:NM_001271421:exon18:c.A1393G:p.T465A,Ephx2:NM_001271402:exon19:c.A1432G:p.T478A,Ephx2:NM_007940:exon19:c.A1591G:p.T531A"	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	2	0.6406532	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	68571494	12A2p6	cell line	sgMsh2	68571494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	95	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon9:c.A764G:p.Y255C	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	0.9999438	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.168	106	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-56383782-69029817	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999977	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	69718587	12A2p6	cell line	sgMsh2	69718587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	174	0	0	NA	exonic	Chmp7	nonsynonymous SNV	Chmp7:NM_134078:exon9:c.A1231G:p.S411G	14qD2	chr14-69031205-70667454	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.636852776	2	0.9992226	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	70079272	12A2p6	cell line	sgMsh2	70079272	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	78	0	0	NA	exonic	Egr3	synonymous SNV	"Egr3:NM_001289927:exon2:c.A369G:p.Q123Q,Egr3:NM_018781:exon2:c.A531G:p.Q177Q,Egr3:NM_001289925:exon3:c.A417G:p.Q139Q"	14qD2	chr14-69031205-70667454	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	70184940	12A2p6	cell line	sgMsh2	70184940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	71	0	0	NA	exonic	Sorbs3	nonsynonymous SNV	"Sorbs3:NM_001271409:exon7:c.C605T:p.S202F,Sorbs3:NM_001271407:exon18:c.C1661T:p.S554F,Sorbs3:NM_001271408:exon18:c.C1661T:p.S554F,Sorbs3:NM_011366:exon18:c.C1820T:p.S607F"	14qD2	chr14-69031205-70667454	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999955	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	135	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	75292184	12A2p6	cell line	sgMsh2	75292184	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	104	0	0	NA	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon3:c.T124G:p.C42G,Zc3h13:NM_026083:exon3:c.T124G:p.C42G"	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.294839248	3	0.9771398	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	75724715	12A2p6	cell line	sgMsh2	75724715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	92	0	0	NA	exonic	Cog3	nonsynonymous SNV	Cog3:NM_177381:exon15:c.T1715C:p.I572T	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	76506610	12A2p6	cell line	sgMsh2	76506610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	36	0	0	NA	exonic	Tsc22d1	nonsynonymous SNV	"Tsc22d1:NM_001177751:exon3:c.A260G:p.Q87R,Tsc22d1:NM_001310647:exon3:c.A197G:p.Q66R,Tsc22d1:NM_009366:exon3:c.A368G:p.Q123R,Tsc22d1:NM_207652:exon3:c.A3170G:p.Q1057R,Tsc22d1:NM_001310646:exon5:c.A2924G:p.Q975R"	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9986596	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	79062635	12A2p6	cell line	sgMsh2	79062635	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	101	0	0	NA	exonic	Vwa8	synonymous SNV	"Vwa8:NM_027906:exon25:c.T2907A:p.I969I,Vwa8:NM_173758:exon25:c.T2907A:p.I969I"	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999975	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr14	79609025	12A2p6	cell line	sgMsh2	79609025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	113	0	0	NA	exonic	Sugt1	synonymous SNV	Sugt1:NM_026474:exon9:c.T501C:p.D167D	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9988359	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	79610248	12A2p6	cell line	sgMsh2	79610248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	92	0	0	NA	exonic	Sugt1	synonymous SNV	Sugt1:NM_026474:exon10:c.T537C:p.A179A	14qD3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999941	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr14	86981639	12A2p6	cell line	sgMsh2	86981639	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	65	0	0	NA	exonic	Diaph3	nonsynonymous SNV	Diaph3:NM_019670:exon13:c.A1349C:p.H450P	14qE1	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	99088770	12A2p6	cell line	sgMsh2	99088770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	79	0	0	NA	exonic	Dis3	nonsynonymous SNV	"Dis3:NM_001360051:exon9:c.A811G:p.T271A,Dis3:NM_028315:exon9:c.A1378G:p.T460A,Dis3:NM_001360050:exon10:c.A1096G:p.T366A"	14qE2.2	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	103051324	12A2p6	cell line	sgMsh2	103051324	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	93	0	0	NA	exonic	Acod1	nonsynonymous SNV	Acod1:NM_008392:exon4:c.A269T:p.H90L	14qE2.3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	103123316	12A2p6	cell line	sgMsh2	103123316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	61	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon80:c.T13529C:p.I4510T	14qE2.3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	103140915	12A2p6	cell line	sgMsh2	103140915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	152	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon68:c.T11653A:p.F3885I	14qE2.3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	103285363	12A2p6	cell line	sgMsh2	103285363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	113	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon14:c.T2063C:p.M688T	14qE2.3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	104478934	12A2p6	cell line	sgMsh2	104478934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	130	0	0	NA	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T2002C:p.L668L	14qE2.3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	110750452	12A2p6	cell line	sgMsh2	110750452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.G1822T:p.V608F	14qE3	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.28E-08	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	115370033	12A2p6	cell line	sgMsh2	115370033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	126	0	0	NA	exonic	Gpc5	nonsynonymous SNV	Gpc5:NM_175500:exon3:c.A827G:p.N276S	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	118043133	12A2p6	cell line	sgMsh2	118043133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	75	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.T470C:p.V157A	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	116	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	74	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	119139009	12A2p6	cell line	sgMsh2	119139009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	59	0	0	NA	exonic	Hs6st3	nonsynonymous SNV	Hs6st3:NM_015820:exon1:c.T595C:p.F199L	14qE4	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998558	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	121238753	12A2p6	cell line	sgMsh2	121238753	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	164	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon10:c.G981T:p.K327N	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	AGC	nonsynonymous	AAGCCA	17	AAGCCAAAGCCAAAGCC	NA
SSC_p20	chr14	121276256	12A2p6	cell line	sgMsh2	121276256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	47	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon22:c.A2462G:p.E821G	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	GAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
SSC_p20	chr14	121276490	12A2p6	cell line	sgMsh2	121276490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	85	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon23:c.A2623G:p.S875G	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999884	CAG	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr14	121994452	12A2p6	cell line	sgMsh2	121994452	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	65	0	0	NA	exonic	Ubac2	nonsynonymous SNV	Ubac2:NM_026861:exon7:c.G789C:p.R263S	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	180	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	122891529	12A2p6	cell line	sgMsh2	122891529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	121	0	0	NA	exonic	Ggact	synonymous SNV	Ggact:NM_145466:exon3:c.A273G:p.T91T	14qE5	chr14-70668370-123291781	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr14	123507512	12A2p6	cell line	sgMsh2	123507512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	98	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon10:c.A1103G:p.K368R	14qE5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	96	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	152	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	129	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
SSC_p20	chr15	3991830	12A2p6	cell line	sgMsh2	3991830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	141	0	0	NA	exonic	AW549877	nonsynonymous SNV	AW549877:NM_145930:exon3:c.A242C:p.K81T	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	4759828	12A2p6	cell line	sgMsh2	4759828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	93	0	0	NA	exonic	C6	nonsynonymous SNV	C6:NM_016704:exon7:c.A754G:p.T252A	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999947	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	100	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999973	ATG	synonymous	A	5	AAAAA	NA
SSC_p20	chr15	4938378	12A2p6	cell line	sgMsh2	4938378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	172	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon29:c.A2898T:p.L966L	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.51E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	5034235	12A2p6	cell line	sgMsh2	5034235	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	180	0	0	NA	exonic	C7	nonsynonymous SNV	C7:NM_001243837:exon7:c.G683A:p.R228Q	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.16E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	6581000	12A2p6	cell line	sgMsh2	6581000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	121	0	0	NA	exonic	Fyb	synonymous SNV	"Fyb:NM_001278269:exon1:c.A1053G:p.P351P,Fyb:NM_011815:exon1:c.A1053G:p.P351P"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	6790600	12A2p6	cell line	sgMsh2	6790600	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	161	0	0	NA	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon33:c.A4372C:p.R1458R	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	1	0.9998344	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	7247153	12A2p6	cell line	sgMsh2	7247153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	46	0	0	NA	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon12:c.T1531C:p.Y511H,Egflam:NM_001289498:exon12:c.T1081C:p.Y361H,Egflam:NM_178748:exon12:c.T1531C:p.Y511H"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9994913	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	8154993	12A2p6	cell line	sgMsh2	8154993	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	161	0	0	NA	exonic	Nup155	stopgain	Nup155:NM_133227:exon33:c.G3871T:p.E1291X	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	8.29E-09	TGA	nonsynonymous	ATGA	9	ATGAATGAA	NA
SSC_p20	chr15	8186626	12A2p6	cell line	sgMsh2	8186626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	161	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon12:c.A1499G:p.K500R	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	8202292	12A2p6	cell line	sgMsh2	8202292	-	A	Insertion	Strelka2;Vardict	2	0.1277	47	0	0	NA	exonic	Cplane1	frameshift insertion	Cplane1:NM_001162906:exon19:c.3222dupA:p.N1077Kfs*1	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.75301944	NA	NA	ACA	frameshift	A	9	AAAAAAAAA	1
SSC_p20	chr15	8293184	12A2p6	cell line	sgMsh2	8293184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	203	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon45:c.A7742G:p.H2581R,Nipbl:NM_201232:exon45:c.A7742G:p.H2581R"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.12E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	8359104	12A2p6	cell line	sgMsh2	8359104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	281	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon9:c.T1031C:p.M344T,Nipbl:NM_201232:exon9:c.T1031C:p.M344T"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	9335781	12A2p6	cell line	sgMsh2	9335781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	246	0	0	NA	exonic	Ugt3a2	synonymous SNV	Ugt3a2:NM_144845:exon1:c.T87C:p.S29S	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	10371626	12A2p6	cell line	sgMsh2	10371626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	52	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon2:c.A113G:p.K38R,Agxt2:NM_001310735:exon2:c.A113G:p.K38R,Agxt2:NM_001310736:exon2:c.A110G:p.K37R"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	10377393	12A2p6	cell line	sgMsh2	10377393	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	99	0	0	NA	exonic	Agxt2	frameshift deletion	"Agxt2:NM_001031851:exon4:c.378delA:p.K128Nfs*2,Agxt2:NM_001310735:exon4:c.378delA:p.K128Nfs*2,Agxt2:NM_001310736:exon4:c.375delA:p.K127Nfs*2"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr15	11215691	12A2p6	cell line	sgMsh2	11215691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	143	0	0	NA	exonic	Adamts12	nonsynonymous SNV	Adamts12:NM_175501:exon4:c.A797G:p.H266R	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	12149561	12A2p6	cell line	sgMsh2	12149561	A	-	Deletion	Strelka2;Vardict	2	0.2152	79	0	0	NA	exonic	Zfr	frameshift deletion	Zfr:NM_011767:exon7:c.1066delA:p.K358Rfs*4	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
SSC_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	151	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.999891	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	12375226	12A2p6	cell line	sgMsh2	12375226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	70	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A4822G:p.T1608A	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999504	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	12842449	12A2p6	cell line	sgMsh2	12842449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	91	0	0	NA	exonic	Drosha	nonsynonymous SNV	"Drosha:NM_001130149:exon7:c.A1205G:p.E402G,Drosha:NM_026799:exon7:c.A1205G:p.E402G"	15qA1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999935	GAG	nonsynonymous	GGA	15	GGAGGAGGAGGAGGA	NA
SSC_p20	chr15	23474231	12A2p6	cell line	sgMsh2	23474231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	115	0	0	NA	exonic	Cdh18	nonsynonymous SNV	Cdh18:NM_001081299:exon12:c.T2186C:p.V729A	15qA2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9999407	GTG	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr15	25964273	12A2p6	cell line	sgMsh2	25964273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	261	0	0	NA	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T85A:p.C29S,Retreg1:NM_001277316:exon2:c.T109A:p.C37S,Retreg1:NM_001277317:exon2:c.T55A:p.C19S,Retreg1:NM_025459:exon3:c.T85A:p.C29S,Retreg1:NM_001034851:exon4:c.T457A:p.C153S"	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	26552887	12A2p6	cell line	sgMsh2	26552887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	76	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.A293G:p.H98R	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	GTG	nonsynonymous	GTGA	16	TGAGTGGGTGAGTGAG	NA
SSC_p20	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Strelka2;Vardict	2	0.2	115	0	0	NA	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
SSC_p20	chr15	28346829	12A2p6	cell line	sgMsh2	28346829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	56	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon45:c.T7457C:p.M2486T	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	28411584	12A2p6	cell line	sgMsh2	28411584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	125	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.T11098C:p.Y3700H	15qB1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	31486149	12A2p6	cell line	sgMsh2	31486149	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	177	0	0	NA	exonic	Marchf6	nonsynonymous SNV	Marchf6:NM_172606:exon13:c.C1055T:p.A352V	15qB2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	3.06E-08	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	284	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
SSC_p20	chr15	34839711	12A2p6	cell line	sgMsh2	34839711	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	166	0	0	NA	exonic	Kcns2	nonsynonymous SNV	"Kcns2:NM_001271704:exon2:c.A1219G:p.T407A,Kcns2:NM_181317:exon2:c.A1219G:p.T407A"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	35793877	12A2p6	cell line	sgMsh2	35793877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	78	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon38:c.A6698G:p.H2233R	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999772	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	36162732	12A2p6	cell line	sgMsh2	36162732	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	263	0	0	NA	exonic	Fbxo43	frameshift deletion	"Fbxo43:NM_001081253:exon2:c.328delG:p.D110Ifs*12,Fbxo43:NM_001368658:exon2:c.469delG:p.D157Ifs*12"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.83144668	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr15	36234870	12A2p6	cell line	sgMsh2	36234870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	163	0	0	NA	exonic	Spag1	nonsynonymous SNV	"Spag1:NM_001359980:exon19:c.A2678C:p.Q893P,Spag1:NM_001359984:exon19:c.A2714C:p.Q905P,Spag1:NM_012031:exon19:c.A2678C:p.Q893P,Spag1:NM_001359982:exon20:c.A2714C:p.Q905P,Spag1:NM_001359981:exon21:c.A2714C:p.Q905P,Spag1:NM_001359983:exon21:c.A1979C:p.Q660P"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	1.85E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	38022377	12A2p6	cell line	sgMsh2	38022377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	184	0	0	NA	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon15:c.T1882C:p.S628P,Ubr5:NM_001112721:exon15:c.T1864C:p.S622P"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	1	0.9999532	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	38024902	12A2p6	cell line	sgMsh2	38024902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	133	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon14:c.T1629C:p.H543H,Ubr5:NM_001112721:exon14:c.T1611C:p.H537H"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	39437851	12A2p6	cell line	sgMsh2	39437851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	123	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon4:c.A1553G:p.E518G,Rims2:NM_001256383:exon4:c.A1553G:p.E518G,Rims2:NM_053271:exon6:c.A1673G:p.E558G"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9999626	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
SSC_p20	chr15	39511363	12A2p6	cell line	sgMsh2	39511363	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	72	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256382:exon16:c.A3120T:p.S1040S,Rims2:NM_001256383:exon16:c.A3120T:p.S1040S,Rims2:NM_053271:exon18:c.A3240T:p.S1080S"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999591	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	39679291	12A2p6	cell line	sgMsh2	39679291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	89	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon3:c.A328G:p.S110G,Rims2:NM_001256383:exon23:c.A4123G:p.S1375G,Rims2:NM_001256382:exon24:c.A4189G:p.S1397G,Rims2:NM_053271:exon24:c.A4063G:p.S1355G"	15qB3.1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	44380131	12A2p6	cell line	sgMsh2	44380131	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	96	0	0	NA	exonic	Nudcd1	nonsynonymous SNV	"Nudcd1:NM_001113554:exon9:c.C1382T:p.A461V,Nudcd1:NM_026149:exon9:c.C1385T:p.A462V"	15qB3.2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	44396537	12A2p6	cell line	sgMsh2	44396537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	160	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon7:c.T1141C:p.L381L,Nudcd1:NM_026149:exon7:c.T1144C:p.L382L"	15qB3.2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	44405825	12A2p6	cell line	sgMsh2	44405825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	120	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.T438C:p.S146S,Nudcd1:NM_026149:exon3:c.T438C:p.S146S"	15qB3.2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	GAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	44546608	12A2p6	cell line	sgMsh2	44546608	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	181	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.A7510G:p.I2504V	15qB3.2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.05E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	45114359	12A2p6	cell line	sgMsh2	45114359	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	95	0	0	NA	exonic	Kcnv1	synonymous SNV	Kcnv1:NM_026200:exon1:c.C282T:p.C94C	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999956	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	47660150	12A2p6	cell line	sgMsh2	47660150	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	133	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon51:c.C8059T:p.P2687S	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.153	86	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9996097	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47704155	12A2p6	cell line	sgMsh2	47704155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	209	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.A6611T:p.D2204V	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.07E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47704245	12A2p6	cell line	sgMsh2	47704245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.T6521C:p.I2174T	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.40E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47881537	12A2p6	cell line	sgMsh2	47881537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	93	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4373C:p.L1458P	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47881541	12A2p6	cell line	sgMsh2	47881541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	94	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4369C:p.F1457L	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999952	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	47950099	12A2p6	cell line	sgMsh2	47950099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	106	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon21:c.C3348T:p.D1116D	15qB3.3	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	GGT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	50660843	12A2p6	cell line	sgMsh2	50660843	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	217	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon6:c.T3690A:p.D1230E,Trps1:NM_032000:exon6:c.T3678A:p.D1226E,Trps1:NM_001310485:exon8:c.T3123A:p.D1041E"	15qC	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	50846765	12A2p6	cell line	sgMsh2	50846765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	140	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon2:c.A188G:p.E63G,Trps1:NM_001310485:exon2:c.A188G:p.E63G,Trps1:NM_032000:exon2:c.A176G:p.E59G"	15qC	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	54252369	12A2p6	cell line	sgMsh2	54252369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	95	0	0	NA	exonic	Tnfrsf11b	synonymous SNV	Tnfrsf11b:NM_008764:exon5:c.T831C:p.C277C	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	1	0.9285578	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	66	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.577884926	2	0.9205552	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	55588761	12A2p6	cell line	sgMsh2	55588761	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	111	0	0	NA	exonic	Mtbp	nonsynonymous SNV	"Mtbp:NM_001168250:exon13:c.T1427C:p.L476P,Mtbp:NM_134092:exon13:c.T1427C:p.L476P"	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.324323173	3	0.8496978	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	57259163	12A2p6	cell line	sgMsh2	57259163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	28	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon3:c.T417C:p.D139D,Slc22a22:NM_172378:exon4:c.T417C:p.D139D"	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9970925	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	58926473	12A2p6	cell line	sgMsh2	58926473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	154	0	0	NA	exonic	Tatdn1	nonsynonymous SNV	"Tatdn1:NM_001368428:exon3:c.A101G:p.D34G,Tatdn1:NM_001368634:exon3:c.A101G:p.D34G,Tatdn1:NM_175151:exon3:c.A101G:p.D34G"	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	60016402	12A2p6	cell line	sgMsh2	60016402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	155	0	0	NA	exonic	4933412E24Rik	nonsynonymous SNV	4933412E24Rik:NM_027668:exon1:c.T188C:p.V63A	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9999988	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	60917930	12A2p6	cell line	sgMsh2	60917930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	85	0	0	NA	exonic	A1bg	nonsynonymous SNV	A1bg:NM_001081067:exon7:c.T1468C:p.Y490H	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	0.9997839	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	65857540	12A2p6	cell line	sgMsh2	65857540	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	127	0	0	NA	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon18:c.A1900C:p.S634R,Efr3a:NM_133766:exon18:c.A2008C:p.S670R"	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	65923985	12A2p6	cell line	sgMsh2	65923985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	78	0	0	NA	exonic	Hhla1	synonymous SNV	Hhla1:NM_001145096:exon16:c.C1371A:p.A457A	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	TGG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	66002297	12A2p6	cell line	sgMsh2	66002297	T	-	Deletion	Strelka2;Vardict	2	0.1818	187	0	0	NA	exonic	Kcnq3	frameshift deletion	Kcnq3:NM_152923:exon12:c.1601delA:p.K534Sfs*5	15qD1	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr15	66469846	12A2p6	cell line	sgMsh2	66469846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	182	0	0	NA	exonic	Lrrc6	nonsynonymous SNV	Lrrc6:NM_019457:exon4:c.T400C:p.F134L	15qD2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.95E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	66615299	12A2p6	cell line	sgMsh2	66615299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	140	0	0	NA	exonic	Phf20l1	synonymous SNV	Phf20l1:NM_001081409:exon11:c.A1260G:p.L420L	15qD2	chr15-3279130-72007454	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	73522340	12A2p6	cell line	sgMsh2	73522340	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	36	0	0	NA	exonic	Dennd3	synonymous SNV	Dennd3:NM_001081066:exon2:c.C213T:p.S71S	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9986596	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	73542734	12A2p6	cell line	sgMsh2	73542734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	160	0	0	NA	exonic	Dennd3	nonsynonymous SNV	Dennd3:NM_001081066:exon10:c.A1373G:p.H458R	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	2.39E-08	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	74838917	12A2p6	cell line	sgMsh2	74838917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	77	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon4:c.A793C:p.I265L	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.766582045	1	0.9461131	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	74853508	12A2p6	cell line	sgMsh2	74853508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	84	0	0	NA	exonic	Cyp11b2	nonsynonymous SNV	Cyp11b2:NM_009991:exon4:c.T755C:p.V252A	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	75618270	12A2p6	cell line	sgMsh2	75618270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	59	0	0	NA	exonic	Zfp41	nonsynonymous SNV	"Zfp41:NM_001044718:exon2:c.A70G:p.T24A,Zfp41:NM_011759:exon2:c.A70G:p.T24A"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9987249	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	149	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9999942	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	205	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.10E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	147	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	76177742	12A2p6	cell line	sgMsh2	76177742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	267	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8147C:p.Y2716S,Plec:NM_201385:exon32:c.A8033C:p.Y2678S,Plec:NM_201386:exon32:c.A7994C:p.Y2665S,Plec:NM_201387:exon32:c.A7589C:p.Y2530S,Plec:NM_201388:exon32:c.A7589C:p.Y2530S,Plec:NM_201389:exon32:c.A8489C:p.Y2830S,Plec:NM_201390:exon32:c.A7964C:p.Y2655S,Plec:NM_201391:exon32:c.A8060C:p.Y2687S,Plec:NM_201392:exon32:c.A7589C:p.Y2530S,Plec:NM_201393:exon32:c.A8081C:p.Y2694S,Plec:NM_201394:exon32:c.A8060C:p.Y2687S,Plec:NM_001163540:exon33:c.A8504C:p.Y2835S,Plec:NM_001163549:exon33:c.A8075C:p.Y2692S,Plec:NM_001163542:exon34:c.A8198C:p.Y2733S,Plec:NM_001164203:exon34:c.A7589C:p.Y2530S"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76178977	12A2p6	cell line	sgMsh2	76178977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	69	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A7045G:p.T2349A,Plec:NM_201385:exon31:c.A6931G:p.T2311A,Plec:NM_201386:exon31:c.A6892G:p.T2298A,Plec:NM_201387:exon31:c.A6487G:p.T2163A,Plec:NM_201388:exon31:c.A6487G:p.T2163A,Plec:NM_201389:exon31:c.A7387G:p.T2463A,Plec:NM_201390:exon31:c.A6862G:p.T2288A,Plec:NM_201391:exon31:c.A6958G:p.T2320A,Plec:NM_201392:exon31:c.A6487G:p.T2163A,Plec:NM_201393:exon31:c.A6979G:p.T2327A,Plec:NM_201394:exon31:c.A6958G:p.T2320A,Plec:NM_001163540:exon32:c.A7402G:p.T2468A,Plec:NM_001163549:exon32:c.A6973G:p.T2325A,Plec:NM_001163542:exon33:c.A7096G:p.T2366A,Plec:NM_001164203:exon33:c.A6487G:p.T2163A"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.25	54	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.245	55	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997874	AGA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	76292196	12A2p6	cell line	sgMsh2	76292196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	exonic	Spatc1	synonymous SNV	Spatc1:NM_028852:exon5:c.T1146C:p.D382D	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998558	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	76296687	12A2p6	cell line	sgMsh2	76296687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	286	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon27:c.T3815C:p.F1272S	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76298186	12A2p6	cell line	sgMsh2	76298186	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	121	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon21:c.A2968T:p.M990L	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76345552	12A2p6	cell line	sgMsh2	76345552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	271	0	0	NA	exonic	Cyc1	nonsynonymous SNV	Cyc1:NM_025567:exon6:c.A848G:p.D283G	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76451423	12A2p6	cell line	sgMsh2	76451423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	89	0	0	NA	exonic	Mroh1	nonsynonymous SNV	Mroh1:NM_175457:exon39:c.T4265C:p.V1422A	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999921	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76506611	12A2p6	cell line	sgMsh2	76506611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	168	0	0	NA	exonic	Dgat1	synonymous SNV	Dgat1:NM_010046:exon2:c.T270C:p.G90G	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9999934	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	76662824	12A2p6	cell line	sgMsh2	76662824	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	57	0	0	NA	exonic	Kifc2	nonsynonymous SNV	"Kifc2:NM_010630:exon9:c.C931A:p.L311I,Kifc2:NM_001358909:exon10:c.C676A:p.L226I,Kifc2:NM_001358910:exon10:c.C676A:p.L226I"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.507123507	2	0.9671848	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	111	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	76726668	12A2p6	cell line	sgMsh2	76726668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	64	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon8:c.T2735C:p.V912A,Arhgap39:NM_001168288:exon9:c.T2828C:p.V943A"	15qD3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	1	0.9853176	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	352	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	78340739	12A2p6	cell line	sgMsh2	78340739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	372	0	0	NA	exonic	Csf2rb	synonymous SNV	"Csf2rb:NM_007780:exon6:c.A618G:p.L206L,Csf2rb:NM_001358854:exon7:c.A618G:p.L206L"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	78459882	12A2p6	cell line	sgMsh2	78459882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	104	0	0	NA	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon5:c.T443C:p.I148T,Tmprss6:NM_027902:exon5:c.T479C:p.I160T"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	4	1	1	0.9999982	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	78561912	12A2p6	cell line	sgMsh2	78561912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	62	0	0	NA	exonic	Rac2	nonsynonymous SNV	Rac2:NM_009008:exon6:c.T575C:p.L192P	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	79317772	12A2p6	cell line	sgMsh2	79317772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	86	0	0	NA	exonic	Pla2g6	synonymous SNV	"Pla2g6:NM_001199023:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199024:exon2:c.G198A:p.Q66Q,Pla2g6:NM_016915:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199025:exon3:c.G198A:p.Q66Q"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	TCT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	80080908	12A2p6	cell line	sgMsh2	80080908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	151	0	0	NA	exonic	Rpl3	synonymous SNV	Rpl3:NM_013762:exon4:c.T489C:p.I163I	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	2.02E-08	CAA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	80155810	12A2p6	cell line	sgMsh2	80155810	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	101	0	0	NA	exonic	Tab1	nonsynonymous SNV	Tab1:NM_025609:exon8:c.C830A:p.P277H	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.495329937	2	0.9998503	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	80355673	12A2p6	cell line	sgMsh2	80355673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	140	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon7:c.C922A:p.L308I	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	81626341	12A2p6	cell line	sgMsh2	81626341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	125	0	0	NA	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon13:c.A2248G:p.M750V	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	81640123	12A2p6	cell line	sgMsh2	81640123	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.184	208	0	0	NA	exonic	Ep300	frameshift insertion	Ep300:NM_177821:exon25:c.4152dupC:p.P1387Sfs*12	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
SSC_p20	chr15	81640487	12A2p6	cell line	sgMsh2	81640487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	192	0	0	NA	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon26:c.A4217C:p.K1406T	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.36E-09	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	81910516	12A2p6	cell line	sgMsh2	81910516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	134	0	0	NA	exonic	Aco2	nonsynonymous SNV	Aco2:NM_080633:exon12:c.T1474C:p.S492P	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	81949166	12A2p6	cell line	sgMsh2	81949166	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.152	73	0	0	NA	exonic	Csdc2	frameshift deletion	Csdc2:NM_145473:exon4:c.363delC:p.K124Rfs*71	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr15	82066412	12A2p6	cell line	sgMsh2	82066412	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	138	0	0	NA	exonic	4930407I10Rik	frameshift deletion	4930407I10Rik:NM_001166475:exon2:c.4509delT:p.L1505Sfs*15	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr15	82617620	12A2p6	cell line	sgMsh2	82617620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	121	0	0	NA	exonic	Cyp2d34	nonsynonymous SNV	Cyp2d34:NM_145474:exon5:c.T688C:p.F230L	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	82790534	12A2p6	cell line	sgMsh2	82790534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	440	0	0	NA	exonic	Cyp2d26	nonsynonymous SNV	Cyp2d26:NM_029562:exon8:c.C1246A:p.L416I	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	83160416	12A2p6	cell line	sgMsh2	83160416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	135	0	0	NA	exonic	Cyb5r3	nonsynonymous SNV	Cyb5r3:NM_029787:exon6:c.T469C:p.F157L	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	83502185	12A2p6	cell line	sgMsh2	83502185	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	137	0	0	NA	exonic	Ttll1	nonsynonymous SNV	"Ttll1:NM_001357953:exon5:c.G218A:p.R73H,Ttll1:NM_178869:exon5:c.G218A:p.R73H"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	83614998	12A2p6	cell line	sgMsh2	83614998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	151	0	0	NA	exonic	Scube1	nonsynonymous SNV	"Scube1:NM_001271473:exon14:c.A1682G:p.D561G,Scube1:NM_022723:exon16:c.A1925G:p.D642G,Scube1:NM_001271472:exon17:c.A2015G:p.D672G"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	83852059	12A2p6	cell line	sgMsh2	83852059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	197	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon5:c.T652C:p.W218R,Mpped1:NM_001359132:exon5:c.T652C:p.W218R,Mpped1:NM_172610:exon5:c.T652C:p.W218R"	15qE1	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.22E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	83945248	12A2p6	cell line	sgMsh2	83945248	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	103	0	0	NA	exonic	Efcab6	synonymous SNV	Efcab6:NM_029946:exon17:c.C1890T:p.S630S	15qE2	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999998	CGG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	84105512	12A2p6	cell line	sgMsh2	84105512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	37	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T88C:p.F30L,Sult4a1:NM_013873:exon1:c.T88C:p.F30L"	15qE2	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9987833	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	153	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.68E-08	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	84699603	12A2p6	cell line	sgMsh2	84699603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	44	0	0	NA	exonic	Prr5	nonsynonymous SNV	"Prr5:NM_146061:exon6:c.T430C:p.S144P,Prr5:NM_001346662:exon7:c.T403C:p.S135P"	15qE2	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9993825	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	85926240	12A2p6	cell line	sgMsh2	85926240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	86	0	0	NA	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon18:c.T6446A:p.L2149Q	15qE2	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	89102267	12A2p6	cell line	sgMsh2	89102267	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	155	0	0	NA	exonic	Tubgcp6	synonymous SNV	Tubgcp6:NM_001163319:exon18:c.C4152T:p.S1384S	15qE3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	89424843	12A2p6	cell line	sgMsh2	89424843	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	105	0	0	NA	exonic	Cpt1b	nonsynonymous SNV	Cpt1b:NM_009948:exon3:c.G155T:p.R52M	15qE3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	89503434	12A2p6	cell line	sgMsh2	89503434	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	118	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon5:c.C805T:p.R269W	15qE3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	89814244	12A2p6	cell line	sgMsh2	89814244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	121	0	0	NA	exonic	Syt10	nonsynonymous SNV	Syt10:NM_018803:exon3:c.T896C:p.L299P	15qE3	chr15-72009072-90409701	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	90935712	12A2p6	cell line	sgMsh2	90935712	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.101	83	0	0	NA	exonic	Kif21a	synonymous SNV	"Kif21a:NM_001109042:exon32:c.C4533A:p.P1511P,Kif21a:NM_016705:exon32:c.C4551A:p.P1517P,Kif21a:NM_001358050:exon33:c.C4641A:p.P1547P,Kif21a:NM_001109041:exon35:c.C4716A:p.P1572P,Kif21a:NM_001109040:exon36:c.C4848A:p.P1616P"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.595575281	2	0.9628295	CGG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	90956316	12A2p6	cell line	sgMsh2	90956316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	63	0	0	NA	exonic	Kif21a	stopgain	"Kif21a:NM_016705:exon25:c.T3596A:p.L1199X,Kif21a:NM_001109041:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109042:exon26:c.T3617A:p.L1206X,Kif21a:NM_001358050:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109040:exon27:c.T3656A:p.L1219X"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999021	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	90968113	12A2p6	cell line	sgMsh2	90968113	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	83	0	0	NA	exonic	Kif21a	nonsynonymous SNV	"Kif21a:NM_001109041:exon19:c.T2771C:p.M924T,Kif21a:NM_001109042:exon19:c.T2771C:p.M924T,Kif21a:NM_001358050:exon19:c.T2771C:p.M924T,Kif21a:NM_016705:exon19:c.T2771C:p.M924T,Kif21a:NM_001109040:exon20:c.T2810C:p.M937T"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.6774513	CAT	nonsynonymous	ATG	9	ATGATGATG	NA
SSC_p20	chr15	91188906	12A2p6	cell line	sgMsh2	91188906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	123	0	0	NA	exonic	Abcd2	nonsynonymous SNV	"Abcd2:NM_001358967:exon2:c.A1049G:p.Y350C,Abcd2:NM_011994:exon2:c.A1049G:p.Y350C"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	91272378	12A2p6	cell line	sgMsh2	91272378	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	0	0	NA	exonic	Slc2a13	nonsynonymous SNV	Slc2a13:NM_001033633:exon10:c.G1690A:p.A564T	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	91731646	12A2p6	cell line	sgMsh2	91731646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	125	0	0	NA	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon20:c.T2682C:p.D894D	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	91796139	12A2p6	cell line	sgMsh2	91796139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	202	0	0	NA	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon42:c.T6252C:p.D2084D	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	92243027	12A2p6	cell line	sgMsh2	92243027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	181	0	0	NA	exonic	Cntn1	synonymous SNV	"Cntn1:NM_001159647:exon7:c.C633T:p.C211C,Cntn1:NM_001159648:exon7:c.C633T:p.C211C,Cntn1:NM_007727:exon7:c.C633T:p.C211C,Cntn1:NM_001358051:exon9:c.C633T:p.C211C"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.05E-09	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	92250886	12A2p6	cell line	sgMsh2	92250886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	111	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon10:c.A1013G:p.N338S,Cntn1:NM_001159648:exon10:c.A1013G:p.N338S,Cntn1:NM_007727:exon10:c.A1013G:p.N338S,Cntn1:NM_001358051:exon12:c.A1013G:p.N338S"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	93512576	12A2p6	cell line	sgMsh2	93512576	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.166	118	0	0	NA	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon2:c.T6G:p.P2P,Prickle1:NM_001364846:exon2:c.T6G:p.P2P"	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	1	0.9999986	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	94540303	12A2p6	cell line	sgMsh2	94540303	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.184	202	0	0	NA	exonic	Pus7l	frameshift insertion	Pus7l:NM_172437:exon2:c.659dupT:p.K221Qfs*14	15qE3	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
SSC_p20	chr15	96414825	12A2p6	cell line	sgMsh2	96414825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	185	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon15:c.A4334G:p.K1445R	15qF1	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.71E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	96997032	12A2p6	cell line	sgMsh2	96997032	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	119	0	0	NA	exonic	Slc38a4	nonsynonymous SNV	"Slc38a4:NM_001358058:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358059:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358060:exon16:c.A1602G:p.I534M,Slc38a4:NM_027052:exon16:c.A1602G:p.I534M"	15qF1	chr15-90488712-97679427	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.371497453	2	0.8872303	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	97761222	12A2p6	cell line	sgMsh2	97761222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	70	0	0	NA	exonic	Rapgef3	nonsynonymous SNV	"Rapgef3:NM_001177810:exon5:c.T388C:p.C130R,Rapgef3:NM_001177811:exon5:c.T388C:p.C130R,Rapgef3:NM_001357630:exon5:c.T388C:p.C130R,Rapgef3:NM_144850:exon5:c.T388C:p.C130R"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	97994053	12A2p6	cell line	sgMsh2	97994053	A	G	SNV	Mutect2;Strelka2	2	0.103	95	0	0	NA	exonic	Col2a1	synonymous SNV	"Col2a1:NM_001113515:exon15:c.T783C:p.P261P,Col2a1:NM_031163:exon16:c.T987C:p.P329P"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.607368851	2	0.9757494	CAG	synonymous	CAGG	9	CAGGCAGGC	NA
SSC_p20	chr15	98293799	12A2p6	cell line	sgMsh2	98293799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	106	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon2:c.T5C:p.L2P,Zfp641:NM_173769:exon2:c.T5C:p.L2P"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	98543573	12A2p6	cell line	sgMsh2	98543573	G	-	Deletion	Strelka2;Vardict	2	0.2134	164	0	0	NA	exonic	Ccnt1	frameshift deletion	Ccnt1:NM_009833:exon9:c.1813delC:p.L605Ffs*3	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
SSC_p20	chr15	98565114	12A2p6	cell line	sgMsh2	98565114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	173	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	"Ccnt1:NM_001368702:exon2:c.T176G:p.I59S,Ccnt1:NM_009833:exon2:c.T176G:p.I59S"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.28E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	98740418	12A2p6	cell line	sgMsh2	98740418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	76	0	0	NA	exonic	Arf3	nonsynonymous SNV	"Arf3:NM_001355510:exon5:c.A461G:p.Y154C,Arf3:NM_007478:exon5:c.A461G:p.Y154C"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	98806080	12A2p6	cell line	sgMsh2	98806080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	121	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.G1330T:p.G444C	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.630955991	2	0.9870531	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	98806898	12A2p6	cell line	sgMsh2	98806898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	42	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.T512C:p.V171A	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	98863015	12A2p6	cell line	sgMsh2	98863015	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	72	0	0	NA	exonic	Kmt2d	frameshift deletion	Kmt2d:NM_001033276:exon11:c.2453delC:p.P818Hfs*4	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
SSC_p20	chr15	98863224	12A2p6	cell line	sgMsh2	98863224	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	95	0	0	NA	exonic	Kmt2d	synonymous SNV	Kmt2d:NM_001033276:exon11:c.T2244A:p.S748S	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	99406630	12A2p6	cell line	sgMsh2	99406630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	239	0	0	NA	exonic	Tmbim6	synonymous SNV	"Tmbim6:NM_001171035:exon8:c.T567C:p.T189T,Tmbim6:NM_026669:exon8:c.T567C:p.T189T,Tmbim6:NM_001171034:exon9:c.T567C:p.T189T,Tmbim6:NM_001171036:exon9:c.T567C:p.T189T"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr15	99520343	12A2p6	cell line	sgMsh2	99520343	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon5:c.G360T:p.K120N,Faim2:NM_028224:exon5:c.G396T:p.K132N"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	99579305	12A2p6	cell line	sgMsh2	99579305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	79	0	0	NA	exonic	Aqp2	synonymous SNV	Aqp2:NM_009699:exon1:c.C153T:p.G51G	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	GCA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	99692793	12A2p6	cell line	sgMsh2	99692793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	120	0	0	NA	exonic	Asic1	synonymous SNV	Asic1:NM_001289791:exon1:c.T423C:p.N141N	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr15	100005290	12A2p6	cell line	sgMsh2	100005290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	182	0	0	NA	exonic	Larp4	nonsynonymous SNV	"Larp4:NM_001024526:exon13:c.A1418G:p.D473G,Larp4:NM_001080948:exon13:c.A1415G:p.D472G,Larp4:NM_001284521:exon13:c.A1241G:p.D414G,Larp4:NM_001284522:exon13:c.A1412G:p.D471G,Larp4:NM_001284523:exon13:c.A1421G:p.D474G"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.95E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100010442	12A2p6	cell line	sgMsh2	100010442	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	73	0	0	NA	exonic	Larp4	synonymous SNV	"Larp4:NM_001024526:exon15:c.G1803T:p.P601P,Larp4:NM_001080948:exon15:c.G1800T:p.P600P,Larp4:NM_001284521:exon15:c.G1626T:p.P542P,Larp4:NM_001284522:exon15:c.G1797T:p.P599P,Larp4:NM_001284523:exon15:c.G1806T:p.P602P"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.571988141	2	0.9617977	CGA	synonymous	NA	NA	NA	NA
SSC_p20	chr15	100209633	12A2p6	cell line	sgMsh2	100209633	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	93	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon31:c.G3523A:p.E1175K,Dip2b:NM_001159361:exon36:c.G4225A:p.E1409K"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100401578	12A2p6	cell line	sgMsh2	100401578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	231	0	0	NA	exonic	Slc11a2	nonsynonymous SNV	"Slc11a2:NM_001146161:exon12:c.A1171G:p.T391A,Slc11a2:NM_001356952:exon12:c.A379G:p.T127A,Slc11a2:NM_008732:exon12:c.A1171G:p.T391A"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100408102	12A2p6	cell line	sgMsh2	100408102	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	122	0	0	NA	exonic	Slc11a2	nonsynonymous SNV	"Slc11a2:NM_001146161:exon5:c.A428G:p.K143R,Slc11a2:NM_008732:exon5:c.A428G:p.K143R"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.513020292	2	0.9999739	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100513159	12A2p6	cell line	sgMsh2	100513159	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.157	111	0	0	NA	exonic	Tfcp2	nonsynonymous SNV	"Tfcp2:NM_001289603:exon12:c.T1067C:p.L356P,Tfcp2:NM_001355497:exon12:c.T1073C:p.L358P,Tfcp2:NM_033476:exon12:c.T1073C:p.L358P"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	0.9999679	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	56	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	100972946	12A2p6	cell line	sgMsh2	100972946	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	89	0	0	NA	exonic	Scn8a	stopgain	"Scn8a:NM_011323:exon9:c.C1327T:p.Q443X,Scn8a:NM_001077499:exon10:c.C1327T:p.Q443X"	15qF1	chr15-97680059-102454328	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	GCA	nonsynonymous	AGC	8	AGCAGCAG	NA
SSC_p20	chr15	102501533	12A2p6	cell line	sgMsh2	102501533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	69	0	0	NA	exonic	Map3k12	synonymous SNV	"Map3k12:NM_009582:exon11:c.T1806C:p.H602H,Map3k12:NM_001163643:exon13:c.T1806C:p.H602H,Map3k12:NM_001358844:exon13:c.T1806C:p.H602H"	15qF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr15	103308984	12A2p6	cell line	sgMsh2	103308984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	100	0	0	NA	exonic	Gpr84	nonsynonymous SNV	Gpr84:NM_030720:exon2:c.T665C:p.I222T	15qF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr15	103462798	12A2p6	cell line	sgMsh2	103462798	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	133	0	0	NA	exonic	Nckap1l	nonsynonymous SNV	Nckap1l:NM_153505:exon7:c.A716C:p.N239T	15qF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	203	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	238	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	3928493	12A2p6	cell line	sgMsh2	3928493	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	78	0	0	NA	exonic	Cluap1	synonymous SNV	Cluap1:NM_029738:exon8:c.G717A:p.P239P	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CGG	synonymous	GGCC	8	GGCCGGCC	NA
SSC_p20	chr16	3979904	12A2p6	cell line	sgMsh2	3979904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	76	0	0	NA	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon15:c.T4615C:p.F1539L	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	4128508	12A2p6	cell line	sgMsh2	4128508	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	161	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon6:c.G1506T:p.Q502H	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	54	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
SSC_p20	chr16	7224486	12A2p6	cell line	sgMsh2	7224486	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	64	0	0	NA	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.C275T:p.P92L,Rbfox1:NM_001359728:exon2:c.C275T:p.P92L,Rbfox1:NM_001359729:exon2:c.C275T:p.P92L,Rbfox1:NM_183188:exon2:c.C263T:p.P88L,Rbfox1:NM_001359723:exon5:c.C203T:p.P68L,Rbfox1:NM_001359724:exon5:c.C203T:p.P68L,Rbfox1:NM_001359730:exon5:c.C203T:p.P68L,Rbfox1:NM_001359725:exon6:c.C203T:p.P68L,Rbfox1:NM_021477:exon6:c.C203T:p.P68L"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	8696720	12A2p6	cell line	sgMsh2	8696720	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	164	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon20:c.A2168T:p.D723V	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.595575281	2	0.9999234	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	8696888	12A2p6	cell line	sgMsh2	8696888	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	227	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon19:c.T2082G:p.D694E	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	149	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	122	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	10209153	12A2p6	cell line	sgMsh2	10209153	A	G	SNV	Mutect2;Vardict	2	0.111	44	0	0	NA	exonic	Atf7ip2	nonsynonymous SNV	"Atf7ip2:NM_029253:exon4:c.A284G:p.Q95R,Atf7ip2:NM_153123:exon4:c.A284G:p.Q95R"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.654543131	1	0.7019874	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	13827447	12A2p6	cell line	sgMsh2	13827447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	151	0	0	NA	exonic	Ntan1	synonymous SNV	"Ntan1:NM_001346109:exon2:c.T220C:p.L74L,Ntan1:NM_001346111:exon2:c.T220C:p.L74L,Ntan1:NM_001346108:exon3:c.T286C:p.L96L,Ntan1:NM_001346110:exon3:c.T286C:p.L96L,Ntan1:NM_001346106:exon4:c.T310C:p.L104L,Ntan1:NM_001346107:exon4:c.T310C:p.L104L,Ntan1:NM_010946:exon4:c.T310C:p.L104L"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.02E-08	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr16	13835196	12A2p6	cell line	sgMsh2	13835196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	70	0	0	NA	exonic	Ntan1	nonsynonymous SNV	"Ntan1:NM_001346111:exon7:c.T611G:p.L204W,Ntan1:NM_001346109:exon8:c.T725G:p.L242W,Ntan1:NM_001346110:exon8:c.T677G:p.L226W,Ntan1:NM_001346106:exon9:c.T701G:p.L234W,Ntan1:NM_001346108:exon9:c.T791G:p.L264W,Ntan1:NM_010946:exon10:c.T815G:p.L272W"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999772	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	126	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	14198085	12A2p6	cell line	sgMsh2	14198085	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.206	129	0	0	NA	exonic	Myh11	synonymous SNV	Myh11:NM_013607:exon41:c.G5790C:p.G1930G	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	GCC	synonymous	G	8	GGGGGGGG	NA
SSC_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	131	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	146	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.22E-08	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	68	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999397	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	52	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	19566134	12A2p6	cell line	sgMsh2	19566134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	375	0	0	NA	exonic	Olfr169	nonsynonymous SNV	Olfr169:NM_001011855:exon1:c.A748G:p.M250V	16qA3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	20602046	12A2p6	cell line	sgMsh2	20602046	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	71	0	0	NA	exonic	Vwa5b2	nonsynonymous SNV	"Vwa5b2:NM_001384104:exon16:c.C2609T:p.P870L,Vwa5b2:NM_001384105:exon16:c.C2606T:p.P869L,Vwa5b2:NM_001144953:exon19:c.C2606T:p.P869L"	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	20686878	12A2p6	cell line	sgMsh2	20686878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	71	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.T3857C:p.L1286P,Eif4g1:NM_145941:exon26:c.T3899C:p.L1300P"	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	21762633	12A2p6	cell line	sgMsh2	21762633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	244	0	0	NA	exonic	Ehhadh	synonymous SNV	Ehhadh:NM_023737:exon7:c.A1608G:p.G536G	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	93	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	21983967	12A2p6	cell line	sgMsh2	21983967	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.294	135	0	0	NA	exonic	Liph	frameshift insertion	"Liph:NM_001083894:exon2:c.350_351insT:p.H119Pfs*3,Liph:NM_001289582:exon2:c.350_351insT:p.H119Pfs*3,Liph:NM_153404:exon2:c.350_351insT:p.H119Pfs*3"	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GGT	frameshift	G	5	GGGGG	1
SSC_p20	chr16	22865542	12A2p6	cell line	sgMsh2	22865542	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	149	0	0	NA	exonic	Dnajb11	frameshift deletion	"Dnajb11:NM_001190804:exon3:c.314delT:p.S107Hfs*29,Dnajb11:NM_001190805:exon3:c.314delT:p.S107Hfs*29,Dnajb11:NM_026400:exon3:c.314delT:p.S107Hfs*29"	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	144	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	29454864	12A2p6	cell line	sgMsh2	29454864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	44	0	0	NA	exonic	Atp13a4	nonsynonymous SNV	"Atp13a4:NM_001164612:exon12:c.T1292G:p.V431G,Atp13a4:NM_172613:exon12:c.T1235G:p.V412G,Atp13a4:NM_001164613:exon13:c.T1292G:p.V431G"	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9993825	CAC	nonsynonymous	CCT	8	CCTCCTCC	NA
SSC_p20	chr16	31944509	12A2p6	cell line	sgMsh2	31944509	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.33	91	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T384G:p.N128K	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	31944513	12A2p6	cell line	sgMsh2	31944513	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.338	92	0	0	NA	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.388delT:p.L130Cfs*38	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr16	31944810	12A2p6	cell line	sgMsh2	31944810	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	154	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.G685A:p.E229K	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.554297786	2	0.9999893	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	31989060	12A2p6	cell line	sgMsh2	31989060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	107	0	0	NA	exonic	Senp5	nonsynonymous SNV	"Senp5:NM_001357087:exon2:c.A1375G:p.S459G,Senp5:NM_001357088:exon2:c.A1375G:p.S459G,Senp5:NM_177103:exon2:c.A1375G:p.S459G"	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	31990289	12A2p6	cell line	sgMsh2	31990289	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	203	0	0	NA	exonic	Senp5	nonsynonymous SNV	"Senp5:NM_001357087:exon2:c.C146T:p.A49V,Senp5:NM_001357088:exon2:c.C146T:p.A49V,Senp5:NM_177103:exon2:c.C146T:p.A49V"	16qB2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.188697119	3	1.12E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	147	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	215	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	34879075	12A2p6	cell line	sgMsh2	34879075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Mylk	synonymous SNV	Mylk:NM_139300:exon8:c.A807G:p.K269K	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	AAG	synonymous	C	5	CCCCC	NA
SSC_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	96	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	36495463	12A2p6	cell line	sgMsh2	36495463	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	55	0	0	NA	exonic	Casr	frameshift deletion	Casr:NM_013803:exon7:c.2244delC:p.S749Pfs*27	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr16	37115952	12A2p6	cell line	sgMsh2	37115952	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	29	0	0	NA	exonic	Stxbp5l	nonsynonymous SNV	"Stxbp5l:NM_001114611:exon25:c.G3153T:p.M1051I,Stxbp5l:NM_001114612:exon26:c.G3324T:p.M1108I,Stxbp5l:NM_001114613:exon26:c.G3225T:p.M1075I,Stxbp5l:NM_172440:exon27:c.G3396T:p.M1132I"	16qB3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9973605	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	38606763	12A2p6	cell line	sgMsh2	38606763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	40	0	0	NA	exonic	Arhgap31	nonsynonymous SNV	Arhgap31:NM_020260:exon11:c.A1726G:p.T576A	16qB4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9990902	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	43988139	12A2p6	cell line	sgMsh2	43988139	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	58	0	0	NA	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon9:c.G960T:p.K320N,Gramd1c:NM_153528:exon9:c.G960T:p.K320N,Gramd1c:NM_001359085:exon13:c.G1491T:p.K497N"	16qB4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998411	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	174	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	44421131	12A2p6	cell line	sgMsh2	44421131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	168	0	0	NA	exonic	Cfap44	nonsynonymous SNV	Cfap44:NM_001033247:exon16:c.A1864G:p.T622A	16qB4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	AAC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr16	45723009	12A2p6	cell line	sgMsh2	45723009	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	90	0	0	NA	exonic	Tagln3	nonsynonymous SNV	Tagln3:NM_019754:exon2:c.T269G:p.M90R	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	45748812	12A2p6	cell line	sgMsh2	45748812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	100	0	0	NA	exonic	Phldb2	nonsynonymous SNV	"Phldb2:NM_001357078:exon16:c.A3395G:p.D1132G,Phldb2:NM_153412:exon17:c.A3524G:p.D1175G,Phldb2:NM_001252442:exon18:c.A3683G:p.D1228G"	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	209	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.07E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	49091132	12A2p6	cell line	sgMsh2	49091132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	121	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon10:c.T926C:p.V309A	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	49163139	12A2p6	cell line	sgMsh2	49163139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	56	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon32:c.A4616G:p.E1539G	16qB5	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	56188338	12A2p6	cell line	sgMsh2	56188338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	89	0	0	NA	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_025483:exon24:c.T3080C:p.L1027P,Senp7:NM_001360073:exon25:c.T2882C:p.L961P"	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.02E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	106	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9998699	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	57163596	12A2p6	cell line	sgMsh2	57163596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	168	0	0	NA	exonic	Nit2	synonymous SNV	Nit2:NM_023175:exon4:c.T258C:p.P86P	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr16	57290871	12A2p6	cell line	sgMsh2	57290871	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	87	0	0	NA	exonic	Tmem30c	nonsynonymous SNV	Tmem30c:NM_027651:exon2:c.C37T:p.P13S	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	57571922	12A2p6	cell line	sgMsh2	57571922	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	200	0	0	NA	exonic	Filip1l	frameshift deletion	"Filip1l:NM_001177871:exon2:c.2158delA:p.S721Afs*6,Filip1l:NM_001040397:exon5:c.2872delA:p.S959Afs*6"	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	181	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr16	58926556	12A2p6	cell line	sgMsh2	58926556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	197	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A14G:p.N5S	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.22E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	59201814	12A2p6	cell line	sgMsh2	59201814	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	222	0	0	NA	exonic	Olfr198	nonsynonymous SNV	Olfr198:NM_001011808:exon1:c.C611A:p.A204D	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	59345618	12A2p6	cell line	sgMsh2	59345618	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	253	0	0	NA	exonic	Olfr206	nonsynonymous SNV	Olfr206:NM_146991:exon1:c.C82A:p.L28M	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
SSC_p20	chr16	63552532	12A2p6	cell line	sgMsh2	63552532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	99	0	0	NA	exonic	Epha3	nonsynonymous SNV	"Epha3:NM_001362452:exon16:c.T2804C:p.V935A,Epha3:NM_010140:exon16:c.T2807C:p.V936A"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	64478578	12A2p6	cell line	sgMsh2	64478578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	166	0	0	NA	exonic	Csnka2ip	synonymous SNV	"Csnka2ip:NM_001368721:exon3:c.G1422A:p.Q474Q,Csnka2ip:NM_173861:exon3:c.G1422A:p.Q474Q"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	ACT	synonymous	NA	NA	NA	NA
SSC_p20	chr16	64855935	12A2p6	cell line	sgMsh2	64855935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	81	0	0	NA	exonic	Cggbp1	synonymous SNV	"Cggbp1:NM_001357416:exon3:c.C363T:p.A121A,Cggbp1:NM_178647:exon3:c.C363T:p.A121A"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999829	CCG	synonymous	NA	NA	NA	NA
SSC_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.369	81	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr16	65523621	12A2p6	cell line	sgMsh2	65523621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	92	0	0	NA	exonic	Pou1f1	synonymous SNV	"Pou1f1:NM_001362468:exon1:c.T171C:p.Y57Y,Pou1f1:NM_008849:exon2:c.T201C:p.Y67Y"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999941	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr16	66731464	12A2p6	cell line	sgMsh2	66731464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	77	0	0	NA	exonic	Cadm2	synonymous SNV	Cadm2:NM_001347247:exon8:c.C984T:p.S328S	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999748	GGG	synonymous	AGGG	8	AGGGAGGG	NA
SSC_p20	chr16	69858878	12A2p6	cell line	sgMsh2	69858878	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	214	0	0	NA	exonic	Speer2	frameshift deletion	Speer2:NM_173069:exon4:c.326delA:p.N109Ifs*6	16qC2	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr16	74352713	12A2p6	cell line	sgMsh2	74352713	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	112	0	0	NA	exonic	Robo2	frameshift deletion	"Robo2:NM_001358491:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358492:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358493:exon2:c.295delG:p.D99Mfs*44,Robo2:NM_001358494:exon2:c.226delG:p.D76Mfs*44,Robo2:NM_175549:exon2:c.226delG:p.D76Mfs*44"	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC_p20	chr16	77080387	12A2p6	cell line	sgMsh2	77080387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	112	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon15:c.T1760C:p.M587T	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	77081501	12A2p6	cell line	sgMsh2	77081501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	65	0	0	NA	exonic	Usp25	synonymous SNV	Usp25:NM_013918:exon16:c.T1812C:p.A604A	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr16	81437723	12A2p6	cell line	sgMsh2	81437723	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	exonic	Ncam2	synonymous SNV	"Ncam2:NM_001113208:exon4:c.C465A:p.V155V,Ncam2:NM_010954:exon4:c.C465A:p.V155V"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	TCA	synonymous	CAC	8	CACCACCA	NA
SSC_p20	chr16	84734525	12A2p6	cell line	sgMsh2	84734525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	109	0	0	NA	exonic	Mrpl39	synonymous SNV	"Mrpl39:NM_001384093:exon2:c.G153A:p.R51R,Mrpl39:NM_001384095:exon2:c.G153A:p.R51R,Mrpl39:NM_017404:exon2:c.G153A:p.R51R"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999989	GCC	synonymous	CTGC	8	CTGCCTGC	NA
SSC_p20	chr16	87382636	12A2p6	cell line	sgMsh2	87382636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	105	0	0	NA	exonic	Ltn1	nonsynonymous SNV	Ltn1:NM_001081068:exon26:c.G4636A:p.E1546K	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999983	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	87408812	12A2p6	cell line	sgMsh2	87408812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	158	0	0	NA	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon16:c.A2964G:p.Q988Q	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-08	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	102	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999978	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	89898281	12A2p6	cell line	sgMsh2	89898281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	100	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.T287C:p.M96T,Tiam1:NM_009384:exon4:c.T287C:p.M96T"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	90927124	12A2p6	cell line	sgMsh2	90927124	T	G	SNV	Mutect2;Vardict	2	0.077	56	0	0	NA	exonic	Cfap298	nonsynonymous SNV	Cfap298:NM_026502:exon5:c.A640C:p.T214P	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.454052442	2	0.009970796	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	163	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.01E-09	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr16	91226872	12A2p6	cell line	sgMsh2	91226872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	32	0	0	NA	exonic	Olig2	nonsynonymous SNV	Olig2:NM_016967:exon2:c.A473G:p.Y158C	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9980255	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	91658299	12A2p6	cell line	sgMsh2	91658299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	214	0	0	NA	exonic	Son	synonymous SNV	"Son:NM_019973:exon3:c.T3933C:p.H1311H,Son:NM_178880:exon3:c.T3933C:p.H1311H"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr16	92077677	12A2p6	cell line	sgMsh2	92077677	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	269	0	0	NA	exonic	Slc5a3	synonymous SNV	Slc5a3:NM_017391:exon2:c.T621C:p.I207I	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.182800334	3	1.00E-09	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr16	94686583	12A2p6	cell line	sgMsh2	94686583	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	52	0	0	NA	exonic	Dyrk1a	nonsynonymous SNV	"Dyrk1a:NM_001347731:exon10:c.T1624G:p.C542G,Dyrk1a:NM_001113389:exon11:c.T1651G:p.C551G,Dyrk1a:NM_007890:exon11:c.T1651G:p.C551G"	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	162	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	7.62E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	95409768	12A2p6	cell line	sgMsh2	95409768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	116	0	0	NA	exonic	Erg	nonsynonymous SNV	"Erg:NM_001302153:exon2:c.T203C:p.M68T,Erg:NM_001302154:exon2:c.T203C:p.M68T,Erg:NM_001302179:exon3:c.T224C:p.M75T,Erg:NM_001302183:exon3:c.T224C:p.M75T,Erg:NM_133659:exon3:c.T224C:p.M75T,Erg:NM_001302152:exon4:c.T224C:p.M75T"	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	96425060	12A2p6	cell line	sgMsh2	96425060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	94	0	0	NA	exonic	Itgb2l	nonsynonymous SNV	Itgb2l:NM_008405:exon14:c.A1830G:p.I610M	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	96608180	12A2p6	cell line	sgMsh2	96608180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	158	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon32:c.A5542G:p.T1848A	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	96648186	12A2p6	cell line	sgMsh2	96648186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	137	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon24:c.A4211G:p.N1404S	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	97876244	12A2p6	cell line	sgMsh2	97876244	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	59	0	0	NA	exonic	C2cd2	nonsynonymous SNV	C2cd2:NM_174847:exon10:c.G1279T:p.G427W	16qC4	chr16-4630421-97886207	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998558	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr16	97950887	12A2p6	cell line	sgMsh2	97950887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	42	0	0	NA	exonic	Zbtb21	nonsynonymous SNV	"Zbtb21:NM_001081684:exon2:c.A2195G:p.K732R,Zbtb21:NM_175428:exon3:c.A2279G:p.K760R"	16qC4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	3187674	12A2p6	cell line	sgMsh2	3187674	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	69	0	0	NA	exonic	Scaf8	frameshift deletion	Scaf8:NM_134123:exon15:c.1721delA:p.V576fs*0	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Strelka2;Vardict	2	0.2157	102	0	0	NA	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
SSC_p20	chr17	6280693	12A2p6	cell line	sgMsh2	6280693	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	205	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon2:c.G104A:p.G35D,Tmem181a:NM_001357884:exon2:c.G227A:p.G76D"	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.10E-09	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	7236056	12A2p6	cell line	sgMsh2	7236056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	115	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon3:c.T227C:p.V76A	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	7771665	12A2p6	cell line	sgMsh2	7771665	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	68	0	0	NA	exonic	Fndc1	synonymous SNV	Fndc1:NM_001081416:exon9:c.C3345A:p.A1115A	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	TGG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	7805009	12A2p6	cell line	sgMsh2	7805009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	121	0	0	NA	exonic	Fndc1	nonsynonymous SNV	Fndc1:NM_001081416:exon2:c.T113C:p.L38P	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CAG	nonsynonymous	GTGG	8	GTGGGTGG	NA
SSC_p20	chr17	9005207	12A2p6	cell line	sgMsh2	9005207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	93	0	0	NA	exonic	1700010I14Rik	synonymous SNV	"1700010I14Rik:NM_001347544:exon8:c.T1291C:p.L431L,1700010I14Rik:NM_025851:exon8:c.T1291C:p.L431L"	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	12662768	12A2p6	cell line	sgMsh2	12662768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	0	0	NA	exonic	Slc22a1	nonsynonymous SNV	Slc22a1:NM_009202:exon5:c.T953C:p.L318P	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;MuSe;Vardict	3	0.118	990	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.695820625	2	1.00E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	13236000	12A2p6	cell line	sgMsh2	13236000	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	1194	0	0	NA	exonic	Smok2b	nonsynonymous SNV	Smok2b:NM_001167913:exon2:c.T1046C:p.L349P	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.7842724	1	0.9997311	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	13888230	12A2p6	cell line	sgMsh2	13888230	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	162	0	0	NA	exonic	Afdn	synonymous SNV	Afdn:NM_010806:exon29:c.T4059A:p.P1353P	17qA1	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	14670751	12A2p6	cell line	sgMsh2	14670751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon19:c.T3116C:p.V1039A	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	14685891	12A2p6	cell line	sgMsh2	14685891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	111	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon5:c.A746G:p.H249R	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	15423082	12A2p6	cell line	sgMsh2	15423082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	133	0	0	NA	exonic	Fam120b	nonsynonymous SNV	"Fam120b:NM_001357822:exon7:c.A2122G:p.N708D,Fam120b:NM_024203:exon7:c.A2122G:p.N708D"	17qA2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	17537014	12A2p6	cell line	sgMsh2	17537014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	160	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon15:c.T2623C:p.L875L	17qA3.2	chr17-3079405-17704414	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr17	18105985	12A2p6	cell line	sgMsh2	18105985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	384	0	0	NA	exonic	Vmn2r91	synonymous SNV	"Vmn2r91:NM_001104540:exon3:c.T531C:p.P177P,Vmn2r91:NM_001385124:exon3:c.T531C:p.P177P"	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	18256994	12A2p6	cell line	sgMsh2	18256994	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	356	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon3:c.A1154G:p.N385S	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.188697119	3	1	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	18304169	12A2p6	cell line	sgMsh2	18304169	A	-	Deletion	Strelka2;Vardict	2	0.2704	392	0	0	NA	exonic	Vmn2r93	frameshift deletion	Vmn2r93:NM_001104542:exon2:c.424delA:p.K144Nfs*37	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
SSC_p20	chr17	18305080	12A2p6	cell line	sgMsh2	18305080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	305	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon3:c.T999C:p.F333F	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	18325841	12A2p6	cell line	sgMsh2	18325841	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	995	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon6:c.T1974G:p.A658A	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	165	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.95E-09	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.231	477	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	19066034	12A2p6	cell line	sgMsh2	19066034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	501	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A793G:p.M265V	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	19393762	12A2p6	cell line	sgMsh2	19393762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	610	0	0	NA	exonic	Vmn2r99	synonymous SNV	Vmn2r99:NM_001104551:exon6:c.C1743A:p.P581P	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.577884926	2	1	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	19522553	12A2p6	cell line	sgMsh2	19522553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	423	0	0	NA	exonic	Vmn2r100	synonymous SNV	Vmn2r100:NM_001104562:exon3:c.G1188A:p.E396E	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AGA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	19577445	12A2p6	cell line	sgMsh2	19577445	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	165	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon1:c.T215A:p.I72K	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20030036	12A2p6	cell line	sgMsh2	20030036	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.234	932	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.T1972C:p.F658L	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20030038	12A2p6	cell line	sgMsh2	20030038	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.234	933	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.C1970A:p.T657N	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20042714	12A2p6	cell line	sgMsh2	20042714	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	389	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon2:c.C484G:p.Q162E	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20047997	12A2p6	cell line	sgMsh2	20047997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	111	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon1:c.A209G:p.Y70C	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20228012	12A2p6	cell line	sgMsh2	20228012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	187	0	0	NA	exonic	Vmn2r105	synonymous SNV	Vmn2r105:NM_001369232:exon3:c.T543C:p.I181I	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.59E-09	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	20278544	12A2p6	cell line	sgMsh2	20278544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	250	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon3:c.T1104C:p.D368D,Vmn2r106:NM_001385160:exon3:c.T1104C:p.D368D"	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AAT	synonymous	CAAT	8	CAATCAAT	NA
SSC_p20	chr17	20502847	12A2p6	cell line	sgMsh2	20502847	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.273	196	0	0	NA	exonic	Vmn1r225	frameshift insertion	Vmn1r225:NM_134194:exon1:c.550dupT:p.W185Lfs*4	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC_p20	chr17	20541372	12A2p6	cell line	sgMsh2	20541372	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	191	0	0	NA	exonic	Vmn2r109	synonymous SNV	Vmn2r109:NM_001104571:exon6:c.C1722A:p.A574A	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.40E-09	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	20541410	12A2p6	cell line	sgMsh2	20541410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	154	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.T1684C:p.Y562H	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9999987	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20574197	12A2p6	cell line	sgMsh2	20574197	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	358	0	0	NA	exonic	Vmn2r110	frameshift deletion	Vmn2r110:NM_001104572:exon6:c.2209delT:p.C737Afs*77	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr17	20574454	12A2p6	cell line	sgMsh2	20574454	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.253	390	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon6:c.T1952G:p.L651R	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	20960476	12A2p6	cell line	sgMsh2	20960476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	154	0	0	NA	exonic	Ppp2r1a	nonsynonymous SNV	Ppp2r1a:NM_016891:exon10:c.T1139C:p.V380A	17qA3.2	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.54E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	22146436	12A2p6	cell line	sgMsh2	22146436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	185	0	0	NA	exonic	Zfp947	nonsynonymous SNV	Zfp947:NM_177596:exon5:c.T256C:p.C86R	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.71E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	22602492	12A2p6	cell line	sgMsh2	22602492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.A445G:p.T149A	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	23478497	12A2p6	cell line	sgMsh2	23478497	A	G	SNV	Mutect2;Vardict	2	0.017	319	0	0	NA	exonic	Vmn2r117	nonsynonymous SNV	Vmn2r117:NM_001104581:exon2:c.T220C:p.Y74H	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.100245344	3	1	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	23665855	12A2p6	cell line	sgMsh2	23665855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	30	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon4:c.G613A:p.E205K	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9976039	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	23734188	12A2p6	cell line	sgMsh2	23734188	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	89	0	0	NA	exonic	Pkmyt1	nonsynonymous SNV	Pkmyt1:NM_023058:exon3:c.G717T:p.K239N	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	24185323	12A2p6	cell line	sgMsh2	24185323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	107	0	0	NA	exonic	Tbc1d24	synonymous SNV	"Tbc1d24:NM_001163847:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163848:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163849:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163850:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163851:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163853:exon3:c.T846C:p.P282P,Tbc1d24:NM_173186:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163852:exon4:c.T846C:p.P282P"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	24705697	12A2p6	cell line	sgMsh2	24705697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	157	0	0	NA	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon5:c.A247C:p.T83P	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.18E-08	GTT	nonsynonymous	GGCT	9	GGCTGGCTG	NA
SSC_p20	chr17	24887906	12A2p6	cell line	sgMsh2	24887906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	109	0	0	NA	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon2:c.T553C:p.S185P,Spsb3:NM_001163751:exon2:c.T208C:p.S70P,Spsb3:NM_001374602:exon2:c.T115C:p.S39P,Spsb3:NM_027141:exon2:c.T220C:p.S74P"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	24897219	12A2p6	cell line	sgMsh2	24897219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	207	0	0	NA	exonic	Nme3	nonsynonymous SNV	Nme3:NM_019730:exon5:c.T398C:p.V133A	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	25376911	12A2p6	cell line	sgMsh2	25376911	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	27	0	0	NA	exonic	Cacna1h	frameshift deletion	"Cacna1h:NM_001163691:exon34:c.5918delC:p.P1973Lfs*369,Cacna1h:NM_021415:exon34:c.5971delC:p.L1991Ffs*12"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr17	25750133	12A2p6	cell line	sgMsh2	25750133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	104	0	0	NA	exonic	Msln	nonsynonymous SNV	"Msln:NM_018857:exon12:c.A1277C:p.Q426P,Msln:NM_001356286:exon13:c.A1277C:p.Q426P,Msln:NM_001374653:exon13:c.A1289C:p.Q430P"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	25784350	12A2p6	cell line	sgMsh2	25784350	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	114	0	0	NA	exonic	Haghl	stopgain	"Haghl:NM_001271436:exon4:c.C163T:p.R55X,Haghl:NM_001271437:exon4:c.C163T:p.R55X,Haghl:NM_001378783:exon4:c.C163T:p.R55X,Haghl:NM_001378784:exon4:c.C163T:p.R55X,Haghl:NM_026897:exon4:c.C307T:p.R103X,Haghl:NM_001271433:exon5:c.C307T:p.R103X,Haghl:NM_001271434:exon5:c.C307T:p.R103X,Haghl:NM_001271435:exon5:c.C307T:p.R103X,Haghl:NM_001378780:exon5:c.C307T:p.R103X,Haghl:NM_001378781:exon5:c.C307T:p.R103X,Haghl:NM_001378782:exon5:c.C307T:p.R103X"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	25842013	12A2p6	cell line	sgMsh2	25842013	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.107	103	0	0	NA	exonic	Rhot2	frameshift deletion	"Rhot2:NM_001364950:exon8:c.511delC:p.L171Ffs*31,Rhot2:NM_145999:exon8:c.517delC:p.L173Ffs*31"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.630955991	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr17	25878357	12A2p6	cell line	sgMsh2	25878357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	27	0	0	NA	exonic	Wfikkn1	nonsynonymous SNV	Wfikkn1:NM_001100454:exon2:c.T992C:p.M331T	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9967974	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	62	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	26207563	12A2p6	cell line	sgMsh2	26207563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	93	0	0	NA	exonic	Rgs11	nonsynonymous SNV	Rgs11:NM_001081069:exon12:c.G767A:p.S256N	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
SSC_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	42	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	28067090	12A2p6	cell line	sgMsh2	28067090	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	102	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon9:c.T1211G:p.L404R,Tcp11:NM_001085555:exon10:c.T1313G:p.L438R,Tcp11:NM_001357681:exon10:c.T1313G:p.L438R,Tcp11:NM_001374621:exon10:c.T1190G:p.L397R,Tcp11:NM_013687:exon10:c.T1550G:p.L517R"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	GAG	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr17	28200490	12A2p6	cell line	sgMsh2	28200490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	exonic	Zfp523	nonsynonymous SNV	"Zfp523:NM_001357995:exon7:c.A601G:p.S201G,Zfp523:NM_172617:exon8:c.A601G:p.S201G"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	66	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999268	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	28317212	12A2p6	cell line	sgMsh2	28317212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	77	0	0	NA	exonic	Fance	nonsynonymous SNV	"Fance:NM_001163819:exon4:c.A928G:p.S310G,Fance:NM_001163820:exon4:c.A928G:p.S310G"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	28576240	12A2p6	cell line	sgMsh2	28576240	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	192	0	0	NA	exonic	Lhfpl5	frameshift deletion	Lhfpl5:NM_026571:exon1:c.240delG:p.G82Afs*59	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr17	28691801	12A2p6	cell line	sgMsh2	28691801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	27	0	0	NA	exonic	Mapk14	nonsynonymous SNV	"Mapk14:NM_001168508:exon1:c.C62A:p.P21H,Mapk14:NM_011951:exon1:c.C62A:p.P21H"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	28858946	12A2p6	cell line	sgMsh2	28858946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	112	0	0	NA	exonic	Pnpla1	nonsynonymous SNV	Pnpla1:NM_001034885:exon1:c.A80G:p.Y27C	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	29526332	12A2p6	cell line	sgMsh2	29526332	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.266	129	0	0	NA	exonic	Tmem217	stopgain	"Tmem217:NM_001162902:exon2:c.T423G:p.Y141X,Tmem217:NM_001162901:exon3:c.T423G:p.Y141X"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	29526335	12A2p6	cell line	sgMsh2	29526335	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.264	126	0	0	NA	exonic	Tmem217	synonymous SNV	"Tmem217:NM_001162902:exon2:c.A420C:p.L140L,Tmem217:NM_001162901:exon3:c.A420C:p.L140L"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	29685984	12A2p6	cell line	sgMsh2	29685984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	61	0	0	NA	exonic	Cmtr1	nonsynonymous SNV	Cmtr1:NM_028791:exon9:c.G908A:p.G303D	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	30719001	12A2p6	cell line	sgMsh2	30719001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	133	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon35:c.A4851G:p.E1617E	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9999705	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	131	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr17	30875031	12A2p6	cell line	sgMsh2	30875031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	169	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon93:c.A14098C:p.T4700P	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.36E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	30986137	12A2p6	cell line	sgMsh2	30986137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	125	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon11:c.A1705G:p.T569A	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	31188437	12A2p6	cell line	sgMsh2	31188437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	183	0	0	NA	exonic	Tmprss3	nonsynonymous SNV	"Tmprss3:NM_080727:exon8:c.T815C:p.V272A,Tmprss3:NM_001163776:exon9:c.T881C:p.V294A"	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.86E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	31218058	12A2p6	cell line	sgMsh2	31218058	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	74	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.A648C:p.K216N	17qA3.3	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	31620961	12A2p6	cell line	sgMsh2	31620961	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	211	0	0	NA	exonic	Cbs	nonsynonymous SNV	"Cbs:NM_001271353:exon10:c.G998A:p.R333H,Cbs:NM_144855:exon10:c.G998A:p.R333H,Cbs:NM_178224:exon10:c.G998A:p.R333H"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	2	0.9999988	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	32141504	12A2p6	cell line	sgMsh2	32141504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	28	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.T4452C:p.R1484R	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9970925	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr17	32156258	12A2p6	cell line	sgMsh2	32156258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon7:c.T1189G:p.S397A	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-08	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	32184906	12A2p6	cell line	sgMsh2	32184906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	137	0	0	NA	exonic	Ephx3	nonsynonymous SNV	"Ephx3:NM_001033163:exon7:c.T1265C:p.L422P,Ephx3:NM_001347341:exon7:c.T1244C:p.L415P"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	32305325	12A2p6	cell line	sgMsh2	32305325	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	195	0	0	NA	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon12:c.A1654C:p.I552L,Akap8:NM_019774:exon14:c.A1996C:p.I666L"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.27E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	32377792	12A2p6	cell line	sgMsh2	32377792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	122	0	0	NA	exonic	Wiz	nonsynonymous SNV	Wiz:NM_001372227:exon3:c.C967A:p.L323I	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	32634724	12A2p6	cell line	sgMsh2	32634724	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	350	0	0	NA	exonic	Cyp4f37	frameshift deletion	Cyp4f37:NM_001100187:exon12:c.1381delT:p.S462Lfs*7	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr17	33433082	12A2p6	cell line	sgMsh2	33433082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	76	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A115G:p.M39V	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	33433109	12A2p6	cell line	sgMsh2	33433109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A142G:p.T48A	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	AAC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr17	33538279	12A2p6	cell line	sgMsh2	33538279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	209	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon8:c.C9T:p.H3H,Adamts10:NM_001329143:exon9:c.C9T:p.H3H,Adamts10:NM_001329203:exon10:c.C102T:p.H34H,Adamts10:NM_172619:exon10:c.C1206T:p.H402H"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.07E-09	ACG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	33819931	12A2p6	cell line	sgMsh2	33819931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	119	0	0	NA	exonic	Kank3	nonsynonymous SNV	Kank3:NM_030697:exon7:c.A1823G:p.N608S	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	47	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9995383	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	34042235	12A2p6	cell line	sgMsh2	34042235	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	95	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_001317722:exon2:c.T158G:p.V53G,Col11a2:NM_009926:exon2:c.T158G:p.V53G"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	34063180	12A2p6	cell line	sgMsh2	34063180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	69	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_009926:exon57:c.C4043A:p.P1348H,Col11a2:NM_001317722:exon58:c.C4238A:p.P1413H"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	34188199	12A2p6	cell line	sgMsh2	34188199	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	72	0	0	NA	exonic	Tap1	nonsynonymous SNV	"Tap1:NM_001161730:exon1:c.T320G:p.L107R,Tap1:NM_013683:exon1:c.T320G:p.L107R"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	CTG	nonsynonymous	TACTG	10	TACTGTACTG	NA
SSC_p20	chr17	34625876	12A2p6	cell line	sgMsh2	34625876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	147	0	0	NA	exonic	Ppt2	synonymous SNV	"Ppt2:NM_019441:exon3:c.T393G:p.S131S,Ppt2:NM_001302393:exon4:c.T393G:p.S131S,Ppt2:NM_001302394:exon4:c.T393G:p.S131S,Ppt2:NM_001302395:exon4:c.T393G:p.S131S,Ppt2:NM_001302396:exon4:c.T393G:p.S131S"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	59	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	34731092	12A2p6	cell line	sgMsh2	34731092	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	167	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon32:c.C4203T:p.G1401G	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.08E-09	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr17	34839827	12A2p6	cell line	sgMsh2	34839827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	117	0	0	NA	exonic	Skiv2l	nonsynonymous SNV	Skiv2l:NM_021337:exon27:c.T3398C:p.V1133A	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	TAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr17	34857117	12A2p6	cell line	sgMsh2	34857118	TC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	236	0	0	NA	exonic	Cfb	frameshift deletion	"Cfb:NM_001142706:exon16:c.1968_1969del:p.E656Dfs*106,Cfb:NM_008198:exon16:c.1972_1973del:p.D658Cfs*6"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATC	frameshift	TC	8	TCTCTCTC	-2
SSC_p20	chr17	35012598	12A2p6	cell line	sgMsh2	35012598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	104	0	0	NA	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon17:c.A2097G:p.I699M	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35013887	12A2p6	cell line	sgMsh2	35013887	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	243	0	0	NA	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon23:c.A2706C:p.K902N	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.206387474	3	1.03E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35019786	12A2p6	cell line	sgMsh2	35019786	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	55	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon6:c.A849T:p.E283D,Vwa7:NM_138582:exon6:c.A849T:p.E283D"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997874	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35140842	12A2p6	cell line	sgMsh2	35140842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	23	0	0	NA	exonic	Bag6	nonsynonymous SNV	"Bag6:NM_001252468:exon7:c.A776G:p.H259R,Bag6:NM_001252469:exon7:c.A776G:p.H259R,Bag6:NM_001372262:exon7:c.A776G:p.H259R,Bag6:NM_001372279:exon7:c.A776G:p.H259R,Bag6:NM_001372280:exon7:c.A776G:p.H259R,Bag6:NM_001372281:exon7:c.A776G:p.H259R,Bag6:NM_001372282:exon7:c.A776G:p.H259R,Bag6:NM_001372283:exon7:c.A776G:p.H259R,Bag6:NM_001372289:exon7:c.A776G:p.H259R,Bag6:NM_001372290:exon7:c.A776G:p.H259R,Bag6:NM_001372260:exon8:c.A830G:p.H277R,Bag6:NM_001372261:exon8:c.A830G:p.H277R,Bag6:NM_001372265:exon8:c.A830G:p.H277R,Bag6:NM_001372266:exon8:c.A830G:p.H277R,Bag6:NM_001372267:exon8:c.A830G:p.H277R,Bag6:NM_001372268:exon8:c.A830G:p.H277R,Bag6:NM_001372269:exon8:c.A830G:p.H277R,Bag6:NM_001372270:exon8:c.A830G:p.H277R,Bag6:NM_001372271:exon8:c.A830G:p.H277R,Bag6:NM_001372272:exon8:c.A830G:p.H277R,Bag6:NM_001372273:exon8:c.A830G:p.H277R,Bag6:NM_001372274:exon8:c.A830G:p.H277R,Bag6:NM_001372275:exon8:c.A830G:p.H277R,Bag6:NM_001372276:exon8:c.A830G:p.H277R,Bag6:NM_001372277:exon8:c.A830G:p.H277R,Bag6:NM_001372278:exon8:c.A830G:p.H277R,Bag6:NM_001372284:exon8:c.A830G:p.H277R,Bag6:NM_001372285:exon8:c.A830G:p.H277R,Bag6:NM_001372286:exon8:c.A830G:p.H277R,Bag6:NM_001372287:exon8:c.A830G:p.H277R,Bag6:NM_001372288:exon8:c.A830G:p.H277R,Bag6:NM_001372291:exon8:c.A830G:p.H277R,Bag6:NM_057171:exon8:c.A830G:p.H277R"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9952866	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35637549	12A2p6	cell line	sgMsh2	35637549	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	159	0	0	NA	exonic	Mucl3	stopgain	Mucl3:NM_001033366:exon2:c.T1157A:p.L386X	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	9.86E-09	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35650179	12A2p6	cell line	sgMsh2	35650179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	267	0	0	NA	exonic	Sfta2	synonymous SNV	Sfta2:NM_001163194:exon2:c.T96C:p.T32T	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9999918	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	35846367	12A2p6	cell line	sgMsh2	35846367	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	178	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon4:c.G583T:p.V195F	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.672233486	2	0.9908837	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	35978435	12A2p6	cell line	sgMsh2	35978435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	154	0	0	NA	exonic	Prr3	nonsynonymous SNV	"Prr3:NM_145487:exon2:c.A121G:p.S41G,Prr3:NM_001384114:exon3:c.A121G:p.S41G,Prr3:NM_001384116:exon3:c.A121G:p.S41G"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.54E-08	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	36268827	12A2p6	cell line	sgMsh2	36268827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	166	0	0	NA	exonic	Trim39	nonsynonymous SNV	"Trim39:NM_001357889:exon2:c.C235T:p.R79W,Trim39:NM_001374606:exon2:c.C235T:p.R79W,Trim39:NM_024468:exon2:c.C235T:p.R79W,Trim39:NM_178281:exon2:c.C235T:p.R79W"	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	36367968	12A2p6	cell line	sgMsh2	36367968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	292	0	0	NA	exonic	H2-M10.3	synonymous SNV	H2-M10.3:NM_201608:exon2:c.A207G:p.K69K	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.648646346	2	0.9999968	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr17	36670141	12A2p6	cell line	sgMsh2	36670141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	150	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon5:c.A902G:p.E301G	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	36988997	12A2p6	cell line	sgMsh2	36988997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	181	0	0	NA	exonic	H2-M5	nonsynonymous SNV	H2-M5:NM_001115075:exon2:c.T284C:p.I95T	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.05E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	37197051	12A2p6	cell line	sgMsh2	37197051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	44	0	0	NA	exonic	Olfr94	nonsynonymous SNV	Olfr94:NM_001011518:exon1:c.A916G:p.S306G	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9993825	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	37270790	12A2p6	cell line	sgMsh2	37270790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	75	0	0	NA	exonic	H2-M3	synonymous SNV	H2-M3:NM_013819:exon2:c.C342A:p.G114G	17qB1	chr17-17711758-37272598	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	37336968	12A2p6	cell line	sgMsh2	37336968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	459	0	0	NA	exonic	Olfr103	nonsynonymous SNV	Olfr103:NM_146833:exon1:c.A263G:p.K88R	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TTT	nonsynonymous	TTTG	9	TTTGTTTGT	NA
SSC_p20	chr17	37590324	12A2p6	cell line	sgMsh2	37590324	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.256	349	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A28T:p.S10C	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	37672835	12A2p6	cell line	sgMsh2	37672835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	445	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.A811G:p.S271G	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	495	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
SSC_p20	chr17	37850831	12A2p6	cell line	sgMsh2	37850831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	545	0	0	NA	exonic	Olfr126	stopgain	Olfr126:NM_146890:exon1:c.C238T:p.Q80X	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Strelka2;Vardict	2	0.2312	186	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
SSC_p20	chr17	38130501	12A2p6	cell line	sgMsh2	38130501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	168	0	0	NA	exonic	Olfr132	synonymous SNV	Olfr132:NM_001005481:exon1:c.A690G:p.S230S	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	38130571	12A2p6	cell line	sgMsh2	38130571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	169	0	0	NA	exonic	Olfr132	nonsynonymous SNV	Olfr132:NM_001005481:exon1:c.T620C:p.L207P	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.36E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	38148700	12A2p6	cell line	sgMsh2	38148700	A	C	SNV	Mutect2;Vardict	2	0.022	378	0	0	NA	exonic	Olfr133	synonymous SNV	Olfr133:NM_146831:exon1:c.A111C:p.T37T	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.129729269	3	1	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	38148878	12A2p6	cell line	sgMsh2	38148878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	425	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.T289C:p.C97R	17qB1	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	40222479	12A2p6	cell line	sgMsh2	40222479	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	102	0	0	NA	exonic	Crisp3	frameshift deletion	Crisp3:NM_009639:exon8:c.660delA:p.K220Nfs*16	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	289	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	40783774	12A2p6	cell line	sgMsh2	40783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	162	0	0	NA	exonic	Crisp2	nonsynonymous SNV	"Crisp2:NM_001204071:exon7:c.T409C:p.Y137H,Crisp2:NM_009420:exon7:c.T409C:p.Y137H"	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	40880525	12A2p6	cell line	sgMsh2	40880525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	66	0	0	NA	exonic	9130008F23Rik	synonymous SNV	9130008F23Rik:NM_027834:exon1:c.A12G:p.L4L	17qB2	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999268	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	42710391	12A2p6	cell line	sgMsh2	42710391	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	125	0	0	NA	exonic	Adgrf2	nonsynonymous SNV	Adgrf2:NM_001033493:exon6:c.T1541G:p.L514R	17qB3	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	42805235	12A2p6	cell line	sgMsh2	42805235	C	-	Deletion	Mutect2;Vardict	2	0.082	89	0	0	NA	exonic	Cd2ap	frameshift deletion	Cd2ap:NM_009847:exon16:c.1733delG:p.R578Kfs*17	17qB3	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.483536367	NA	NA	TCT	frameshift	NA	NA	NA	-1
SSC_p20	chr17	43487197	12A2p6	cell line	sgMsh2	43487197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	205	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon8:c.A706G:p.S236G	17qB3	chr17-37272599-44814927	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.10E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	46241457	12A2p6	cell line	sgMsh2	46241457	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	44	0	0	NA	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon30:c.3215delT:p.F1073Sfs*4	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	62	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	46310518	12A2p6	cell line	sgMsh2	46310518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	75	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon11:c.G2585T:p.G862V,Abcc10:NM_001347396:exon12:c.G2708T:p.G903V,Abcc10:NM_170680:exon12:c.G2708T:p.G903V"	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	46437191	12A2p6	cell line	sgMsh2	46437191	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.177	125	0	0	NA	exonic	Slc22a7	synonymous SNV	Slc22a7:NM_144856:exon3:c.C540T:p.T180T	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	GGG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	46530010	12A2p6	cell line	sgMsh2	46530010	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	70	0	0	NA	exonic	Cul9	nonsynonymous SNV	Cul9:NM_001081335:exon9:c.C2333A:p.A778D	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	1	0.994486	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	46579147	12A2p6	cell line	sgMsh2	46579147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	118	0	0	NA	exonic	Ptk7	synonymous SNV	Ptk7:NM_175168:exon10:c.A1497G:p.P499P	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	GTG	synonymous	GGT	8	GGTGGTGG	NA
SSC_p20	chr17	46684696	12A2p6	cell line	sgMsh2	46684696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	87	0	0	NA	exonic	Ppp2r5d	nonsynonymous SNV	"Ppp2r5d:NM_001357684:exon12:c.T1429C:p.C477R,Ppp2r5d:NM_009358:exon12:c.T1426C:p.C476R"	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	49070103	12A2p6	cell line	sgMsh2	49070103	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	70	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon2:c.G211T:p.D71Y	17qC	chr17-44879477-49458887	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999504	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	49459065	12A2p6	cell line	sgMsh2	49459065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	32	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001379372:exon24:c.T2970C:p.R990R,Daam2:NM_001008231:exon25:c.T3114C:p.R1038R,Daam2:NM_001379371:exon25:c.T3054C:p.R1018R"	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9980255	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr17	50289226	12A2p6	cell line	sgMsh2	50289226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	97	0	0	NA	exonic	Dazl	nonsynonymous SNV	"Dazl:NM_001277863:exon2:c.T16C:p.S6P,Dazl:NM_010021:exon2:c.T16C:p.S6P"	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	52893952	12A2p6	cell line	sgMsh2	52893952	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.237	108	0	0	NA	exonic	Kcnh8	frameshift insertion	Kcnh8:NM_001031811:exon9:c.1414dupA:p.I472Nfs*7	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
SSC_p20	chr17	53401448	12A2p6	cell line	sgMsh2	53401448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	67	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon11:c.T2193C:p.A731A	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	53679523	12A2p6	cell line	sgMsh2	53679523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	194	0	0	NA	exonic	Sgo1	synonymous SNV	Sgo1:NM_028232:exon7:c.A639G:p.A213A	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.30E-09	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	54281812	12A2p6	cell line	sgMsh2	54281812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	exonic	Slc5a7	nonsynonymous SNV	Slc5a7:NM_022025:exon7:c.A806G:p.Y269C	17qC	chr17-49458888-55866822	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999905	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	56096972	12A2p6	cell line	sgMsh2	56096972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	116	0	0	NA	exonic	Hdgfl2	nonsynonymous SNV	"Hdgfl2:NM_001304784:exon7:c.A827G:p.D276G,Hdgfl2:NM_001304785:exon7:c.A797G:p.D266G,Hdgfl2:NM_001331053:exon7:c.A827G:p.D276G,Hdgfl2:NM_008233:exon7:c.A800G:p.D267G"	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	GAC	nonsynonymous	CTCAGA	12	CTCAGACTCAGA	NA
SSC_p20	chr17	56131744	12A2p6	cell line	sgMsh2	56131744	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	218	0	0	NA	exonic	Sema6b	nonsynonymous SNV	"Sema6b:NM_001130456:exon4:c.G308A:p.R103K,Sema6b:NM_013662:exon4:c.G308A:p.R103K"	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	56270628	12A2p6	cell line	sgMsh2	56270628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	158	0	0	NA	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.T1466C:p.I489T	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-08	GAT	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr17	56271980	12A2p6	cell line	sgMsh2	56271980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	45	0	0	NA	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.G114T:p.Q38H	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994396	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	56413962	12A2p6	cell line	sgMsh2	56413962	T	C	SNV	Mutect2;Vardict	2	0.067	75	0	0	NA	exonic	Ptprs	synonymous SNV	"Ptprs:NM_001252455:exon26:c.A4278G:p.S1426S,Ptprs:NM_001252453:exon27:c.A4290G:p.S1430S,Ptprs:NM_001252456:exon27:c.A4290G:p.S1430S,Ptprs:NM_011218:exon31:c.A5508G:p.S1836S"	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.395084592	2	0.9358486	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	170	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	57033758	12A2p6	cell line	sgMsh2	57033758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	155	0	0	NA	exonic	Slc25a41	nonsynonymous SNV	"Slc25a41:NM_175333:exon6:c.A713G:p.Y238C,Slc25a41:NM_001346527:exon7:c.A671G:p.Y224C"	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	57038678	12A2p6	cell line	sgMsh2	57038678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	28	0	0	NA	exonic	Slc25a41	nonsynonymous SNV	"Slc25a41:NM_175333:exon3:c.A179G:p.Y60C,Slc25a41:NM_001346527:exon4:c.A137G:p.Y46C"	17qD	chr17-55868030-57306544	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9970925	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	57522504	12A2p6	cell line	sgMsh2	57522504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	140	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon4:c.A1374T:p.K458N,Vmn2r120:NM_001104591:exon5:c.A1392T:p.K464N"	17qD	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	58294347	12A2p6	cell line	sgMsh2	58294347	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	214	0	0	NA	exonic	Cntnap5c	frameshift deletion	Cntnap5c:NM_001081653:exon16:c.2489delA:p.I831Sfs*11	17qD	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr17	58313752	12A2p6	cell line	sgMsh2	58313752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	200	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.T2825C:p.L942P	17qD	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.17E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	66343917	12A2p6	cell line	sgMsh2	66343917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	71	0	0	NA	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon13:c.A4552G:p.R1518G,Mtcl1:NM_172963:exon13:c.A4552G:p.R1518G"	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	66685624	12A2p6	cell line	sgMsh2	66685624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	113	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon28:c.A3995G:p.N1332S,Ptprm:NM_001357625:exon30:c.A4097G:p.N1366S"	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	67756754	12A2p6	cell line	sgMsh2	67756754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	82	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon16:c.T2272C:p.C758R	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	67769502	12A2p6	cell line	sgMsh2	67769502	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.138	70	0	0	NA	exonic	Lama1	frameshift deletion	Lama1:NM_008480:exon23:c.3270delT:p.P1092Lfs*9	17qE1.1	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr17	69262266	12A2p6	cell line	sgMsh2	69262266	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	85	0	0	NA	exonic	Epb41l3	nonsynonymous SNV	"Epb41l3:NM_001355732:exon12:c.G1099A:p.E367K,Epb41l3:NM_001355733:exon12:c.G1450A:p.E484K,Epb41l3:NM_001355734:exon12:c.G1504A:p.E502K,Epb41l3:NM_001355735:exon12:c.G1450A:p.E484K,Epb41l3:NM_001355736:exon12:c.G1504A:p.E502K,Epb41l3:NM_013813:exon12:c.G1504A:p.E502K"	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	69388393	12A2p6	cell line	sgMsh2	69388393	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	233	0	0	NA	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.C1085T:p.A362V,Zbtb14:NM_001356283:exon3:c.C1085T:p.A362V,Zbtb14:NM_009547:exon3:c.C1085T:p.A362V"	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	71578139	12A2p6	cell line	sgMsh2	71578139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	83	0	0	NA	exonic	Spdya	nonsynonymous SNV	"Spdya:NM_001142631:exon6:c.G587A:p.R196Q,Spdya:NM_029254:exon6:c.G587A:p.R196Q"	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999859	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	71638379	12A2p6	cell line	sgMsh2	71638379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	98	0	0	NA	exonic	Wdr43	nonsynonymous SNV	Wdr43:NM_175639:exon8:c.A982G:p.T328A	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.607368851	2	0.9803539	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	71801873	12A2p6	cell line	sgMsh2	71801873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	92	0	0	NA	exonic	Clip4	nonsynonymous SNV	"Clip4:NM_001271483:exon5:c.T466C:p.Y156H,Clip4:NM_001271484:exon5:c.T466C:p.Y156H,Clip4:NM_030179:exon5:c.T466C:p.Y156H,Clip4:NM_175378:exon5:c.T466C:p.Y156H"	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	0.9998895	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	71828569	12A2p6	cell line	sgMsh2	71828569	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	105	0	0	NA	exonic	Clip4	frameshift deletion	"Clip4:NM_175378:exon10:c.1174delT:p.Y392Tfs*4,Clip4:NM_001271483:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_001271484:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_030179:exon11:c.1315delT:p.Y439Tfs*4"	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTA	frameshift	NA	NA	NA	-1
SSC_p20	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	24	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9957204	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.362	21	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr17	73943875	12A2p6	cell line	sgMsh2	73943875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	122	0	0	NA	exonic	Xdh	synonymous SNV	Xdh:NM_011723:exon2:c.A81T:p.T27T	17qE2	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	74634868	12A2p6	cell line	sgMsh2	74634868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	52	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon42:c.T8210C:p.L2737P	17qE2	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	74840305	12A2p6	cell line	sgMsh2	74840305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	114	0	0	NA	exonic	Ttc27	synonymous SNV	Ttc27:NM_152817:exon16:c.A1851G:p.K617K	17qE2	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	75282990	12A2p6	cell line	sgMsh2	75282990	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	153	0	0	NA	exonic	Ltbp1	nonsynonymous SNV	"Ltbp1:NM_001331233:exon11:c.C1608A:p.S536R,Ltbp1:NM_001331234:exon11:c.C1611A:p.S537R,Ltbp1:NM_001331235:exon11:c.C1449A:p.S483R,Ltbp1:NM_001331236:exon11:c.C1452A:p.S484R,Ltbp1:NM_001331237:exon11:c.C1452A:p.S484R,Ltbp1:NM_206958:exon11:c.C1611A:p.S537R,Ltbp1:NM_019919:exon15:c.C2565A:p.S855R"	17qE2	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	GCC	nonsynonymous	GCCA	8	GCCAGCCA	NA
SSC_p20	chr17	78824672	12A2p6	cell line	sgMsh2	78824672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	150	0	0	NA	exonic	Heatr5b	nonsynonymous SNV	Heatr5b:NM_001081179:exon8:c.T1001C:p.V334A	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	1	0.9526802	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	78943279	12A2p6	cell line	sgMsh2	78943279	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	291	0	0	NA	exonic	Ndufaf7	frameshift deletion	Ndufaf7:NM_028611:exon6:c.634delT:p.F213Lfs*30	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr17	78951959	12A2p6	cell line	sgMsh2	78951959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	124	0	0	NA	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon18:c.T2286C:p.S762S,Prkd3:NM_001171004:exon19:c.T2571C:p.S857S,Prkd3:NM_029239:exon19:c.T2568C:p.S856S"	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CAC	synonymous	CAT	8	CATCATCA	NA
SSC_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	149	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.44E-08	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	79070838	12A2p6	cell line	sgMsh2	79070838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	160	0	0	NA	exonic	Qpct	nonsynonymous SNV	"Qpct:NM_001316729:exon2:c.T289C:p.Y97H,Qpct:NM_027455:exon3:c.T436C:p.Y146H"	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	79865139	12A2p6	cell line	sgMsh2	79865139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	174	0	0	NA	exonic	Atl2	nonsynonymous SNV	"Atl2:NM_001357752:exon3:c.T401C:p.L134S,Atl2:NM_001357753:exon3:c.T401C:p.L134S,Atl2:NM_019717:exon3:c.T401C:p.L134S"	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	80216772	12A2p6	cell line	sgMsh2	80216772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	243	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.T859C:p.Y287H	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	80433721	12A2p6	cell line	sgMsh2	80433721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	97	0	0	NA	exonic	Sos1	nonsynonymous SNV	Sos1:NM_009231:exon10:c.A1634T:p.Q545L	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	81648517	12A2p6	cell line	sgMsh2	81648517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	145	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon2:c.A1091G:p.Q364R,Slc8a1:NM_001286684:exon2:c.A1091G:p.Q364R,Slc8a1:NM_011406:exon2:c.A1091G:p.Q364R"	17qE3	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.54E-08	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	84692924	12A2p6	cell line	sgMsh2	84692924	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	126	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon5:c.A530T:p.Y177F,Abcg8:NM_001347418:exon6:c.A908T:p.Y303F,Abcg8:NM_026180:exon6:c.A911T:p.Y304F"	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.425	37	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
SSC_p20	chr17	87720926	12A2p6	cell line	sgMsh2	87720926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	131	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon15:c.T2502C:p.A834A	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr17	87975339	12A2p6	cell line	sgMsh2	87975339	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	28	0	0	NA	exonic	Msh6	nonsynonymous SNV	Msh6:NM_010830:exon1:c.C191A:p.P64Q	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.872724174	1	0.9866918	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	88636058	12A2p6	cell line	sgMsh2	88636058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	123	0	0	NA	exonic	Ston1	synonymous SNV	Ston1:NM_029858:exon2:c.T891C:p.P297P	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr17	88636398	12A2p6	cell line	sgMsh2	88636398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	127	0	0	NA	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon2:c.T1231A:p.C411S	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	88742385	12A2p6	cell line	sgMsh2	88742385	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.284	174	0	0	NA	exonic	Lhcgr	frameshift insertion	Lhcgr:NM_013582:exon11:c.1711dupA:p.I571Nfs*2	17qE4	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
SSC_p20	chr17	90037207	12A2p6	cell line	sgMsh2	90037207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	132	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T290C:p.V97A,Nrxn1:NM_001347419:exon3:c.T299C:p.V100A,Nrxn1:NM_001346960:exon6:c.T1187C:p.V396A,Nrxn1:NM_001346961:exon6:c.T1178C:p.V393A,Nrxn1:NM_001346958:exon7:c.T1268C:p.V423A,Nrxn1:NM_001346959:exon7:c.T1277C:p.V426A,Nrxn1:NM_001346957:exon19:c.T4253C:p.V1418A,Nrxn1:NM_177284:exon21:c.T4358C:p.V1453A,Nrxn1:NM_020252:exon23:c.T4394C:p.V1465A"	17qE5	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr17	90630126	12A2p6	cell line	sgMsh2	90630126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	112	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon8:c.T1878C:p.A626A,Nrxn1:NM_177284:exon8:c.T1866C:p.A622A,Nrxn1:NM_020252:exon10:c.T1902C:p.A634A"	17qE5	chr17-57306727-94740433	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	GAG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
SSC_p20	chr18	5103600	12A2p6	cell line	sgMsh2	5103600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	83	0	0	NA	exonic	Svil	synonymous SNV	"Svil:NM_001347449:exon23:c.C4059T:p.H1353H,Svil:NM_153153:exon27:c.C5271T:p.H1757H"	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999859	ACC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	5766932	12A2p6	cell line	sgMsh2	5766932	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	88	0	0	NA	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.A1274C:p.N425T,Zeb1:NM_011546:exon6:c.A1442C:p.N481T,Zeb1:NM_001360981:exon7:c.A1391C:p.N464T"	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999913	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	6936937	12A2p6	cell line	sgMsh2	6936937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	112	0	0	NA	exonic	Mkx	synonymous SNV	Mkx:NM_177595:exon7:c.T993C:p.S331S	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	9213102	12A2p6	cell line	sgMsh2	9213102	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	136	0	0	NA	exonic	Fzd8	synonymous SNV	Fzd8:NM_008058:exon1:c.G183T:p.T61T	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999989	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	112	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	13015915	12A2p6	cell line	sgMsh2	13015915	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	247	0	0	NA	exonic	Hrh4	nonsynonymous SNV	Hrh4:NM_153087:exon2:c.T333G:p.D111E	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	1	0.9987466	ATC	nonsynonymous	CGAT	8	CGATCGAT	NA
SSC_p20	chr18	13844794	12A2p6	cell line	sgMsh2	13844794	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	48	0	0	NA	exonic	Zfp521	nonsynonymous SNV	"Zfp521:NM_001360804:exon4:c.A2561C:p.E854A,Zfp521:NM_145492:exon4:c.A2561C:p.E854A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999581	CTC	nonsynonymous	CCT	9	CCTCCTCCT	NA
SSC_p20	chr18	16629588	12A2p6	cell line	sgMsh2	16629588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	150	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon10:c.A1469G:p.D490G	18qA1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.594	98	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999967	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	21148087	12A2p6	cell line	sgMsh2	21148087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	210	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1211G:p.H404R	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.554297786	2	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	22109705	12A2p6	cell line	sgMsh2	22109705	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	103	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon10:c.A852C:p.K284N	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	22524051	12A2p6	cell line	sgMsh2	22524051	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.A5117T:p.N1706I	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999629	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	22920873	12A2p6	cell line	sgMsh2	22920873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	82	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon4:c.T362C:p.I121T,Nol4:NM_001347509:exon4:c.T581C:p.I194T,Nol4:NM_001347510:exon4:c.T581C:p.I194T,Nol4:NM_199024:exon4:c.T581C:p.I194T,Nol4:NM_001361223:exon5:c.T116C:p.I39T,Nol4:NM_001361224:exon5:c.T116C:p.I39T,Nol4:NM_001361225:exon5:c.T116C:p.I39T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	95	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.72530455	1	0.7540335	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	24121713	12A2p6	cell line	sgMsh2	24121713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	34	0	0	NA	exonic	Ino80c	nonsynonymous SNV	Ino80c:NM_172625:exon1:c.A89G:p.N30S	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9983731	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	24679558	12A2p6	cell line	sgMsh2	24679558	T	C	SNV	Mutect2;Vardict	2	0.036	143	0	0	NA	exonic	Mocos	nonsynonymous SNV	Mocos:NM_026779:exon8:c.T1508C:p.I503T	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.212284259	3	0.9999988	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	25112562	12A2p6	cell line	sgMsh2	25112562	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	94	0	0	NA	exonic	Fhod3	nonsynonymous SNV	"Fhod3:NM_001289654:exon19:c.T3215G:p.L1072R,Fhod3:NM_001289655:exon20:c.T3572G:p.L1191R,Fhod3:NM_175276:exon21:c.T3668G:p.L1223R"	18qA2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9997485	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	31774321	12A2p6	cell line	sgMsh2	31774321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	99	0	0	NA	exonic	Ammecr1l	stopgain	"Ammecr1l:NM_001242430:exon4:c.G715T:p.G239X,Ammecr1l:NM_153515:exon4:c.G493T:p.G165X"	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	AGG	nonsynonymous	TTCA	8	TTCATTCA	NA
SSC_p20	chr18	32861535	12A2p6	cell line	sgMsh2	32861535	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	87	0	0	NA	exonic	Wdr36	nonsynonymous SNV	"Wdr36:NM_001110015:exon19:c.G2048T:p.S683I,Wdr36:NM_001110016:exon19:c.G2048T:p.S683I"	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.347910313	2	0.5413426	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	33876985	12A2p6	cell line	sgMsh2	33876985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	77	0	0	NA	exonic	Epb41l4a	nonsynonymous SNV	Epb41l4a:NM_013512:exon8:c.C566A:p.P189H	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9826436	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	34272445	12A2p6	cell line	sgMsh2	34272445	A	G	SNV	Mutect2;Vardict	2	0.038	142	0	0	NA	exonic	Apc	synonymous SNV	"Apc:NM_001360979:exon5:c.A246G:p.L82L,Apc:NM_001360980:exon5:c.A423G:p.L141L,Apc:NM_007462:exon5:c.A423G:p.L141L"	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.224077829	3	0.9999956	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	102	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999978	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	34448073	12A2p6	cell line	sgMsh2	34448073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	83	0	0	NA	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon17:c.A2035G:p.R679G	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999859	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	122	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TAC	synonymous	T	5	TTTTT	NA
SSC_p20	chr18	36529735	12A2p6	cell line	sgMsh2	36529735	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	104	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_001271544:exon4:c.A542T:p.K181M,Slc4a9:NM_001271545:exon4:c.A542T:p.K181M,Slc4a9:NM_001271546:exon4:c.A542T:p.K181M,Slc4a9:NM_001271547:exon4:c.A542T:p.K181M,Slc4a9:NM_172830:exon4:c.A542T:p.K181M"	18qB2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37344002	12A2p6	cell line	sgMsh2	37344002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	277	0	0	NA	exonic	Pcdhb7	synonymous SNV	Pcdhb7:NM_053132:exon1:c.A2190G:p.V730V	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr18	37355814	12A2p6	cell line	sgMsh2	37355814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	231	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.A544G:p.T182A	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37357271	12A2p6	cell line	sgMsh2	37357271	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	350	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.G2001T:p.Q667H	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37421758	12A2p6	cell line	sgMsh2	37421758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	379	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.A140G:p.N47S	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37485357	12A2p6	cell line	sgMsh2	37485357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	95	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.A199G:p.I67V	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37515443	12A2p6	cell line	sgMsh2	37515443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	308	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1624G:p.S542G	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37676455	12A2p6	cell line	sgMsh2	37676455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	154	0	0	NA	exonic	Pcdhga3	nonsynonymous SNV	Pcdhga3:NM_033586:exon1:c.A1960G:p.T654A	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	181	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.05E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37744153	12A2p6	cell line	sgMsh2	37744153	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	147	0	0	NA	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.C1913T:p.A638V	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	37756153	12A2p6	cell line	sgMsh2	37756153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	225	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A213G:p.Q71Q	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr18	37816197	12A2p6	cell line	sgMsh2	37816197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	101	0	0	NA	exonic	Pcdhgc4	nonsynonymous SNV	Pcdhgc4:NM_033582:exon1:c.A665G:p.N222S	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999975	AAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr18	37820769	12A2p6	cell line	sgMsh2	37820769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	146	0	0	NA	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1095G:p.V365V	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	178	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.40E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	116	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	GTT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr18	41986686	12A2p6	cell line	sgMsh2	41986686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	85	0	0	NA	exonic	Grxcr2	synonymous SNV	Grxcr2:NM_001033426:exon3:c.T588C:p.D196D	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr18	42202698	12A2p6	cell line	sgMsh2	42202698	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	79	0	0	NA	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon32:c.A3352G:p.M1118V	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	42519380	12A2p6	cell line	sgMsh2	42519380	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	36	0	0	NA	exonic	Tcerg1	synonymous SNV	"Tcerg1:NM_001039474:exon2:c.G72A:p.Q24Q,Tcerg1:NM_001289526:exon2:c.G72A:p.Q24Q,Tcerg1:NM_001360881:exon2:c.G72A:p.Q24Q"	18qB3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9986596	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	46905292	12A2p6	cell line	sgMsh2	46905292	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	114	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon20:c.C2912T:p.T971M	18qC	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	47248675	12A2p6	cell line	sgMsh2	47248675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	92	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.T2639C:p.L880P,Sema6a:NM_018744:exon19:c.T2804C:p.L935P"	18qC	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999941	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	52520854	12A2p6	cell line	sgMsh2	52520854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	96	0	0	NA	exonic	Lox	nonsynonymous SNV	"Lox:NM_010728:exon6:c.T1169C:p.V390A,Lox:NM_001286181:exon7:c.T1169C:p.V390A,Lox:NM_001286182:exon7:c.T1169C:p.V390A"	18qD1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	56749782	12A2p6	cell line	sgMsh2	56749782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	42	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon10:c.T1698C:p.A566A	18qD3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9992505	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr18	58058398	12A2p6	cell line	sgMsh2	58058398	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	118	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon36:c.G4652T:p.C1551F	18qD3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	GCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	58190283	12A2p6	cell line	sgMsh2	58190283	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	59	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon5:c.T586A:p.C196S	18qD3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	59011095	12A2p6	cell line	sgMsh2	59011095	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	75	0	0	NA	exonic	Adamts19	frameshift deletion	Adamts19:NM_175506:exon18:c.2748delG:p.L919Sfs*27	18qD3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
SSC_p20	chr18	60391010	12A2p6	cell line	sgMsh2	60391010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	134	0	0	NA	exonic	Iigp1	nonsynonymous SNV	"Iigp1:NM_001146275:exon3:c.A1199G:p.E400G,Iigp1:NM_021792:exon3:c.A1199G:p.E400G"	18qD3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	61081937	12A2p6	cell line	sgMsh2	61081937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	116	0	0	NA	exonic	Pdgfrb	nonsynonymous SNV	"Pdgfrb:NM_001146268:exon22:c.T3025C:p.Y1009H,Pdgfrb:NM_008809:exon22:c.T3022C:p.Y1008H"	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	61140942	12A2p6	cell line	sgMsh2	61140942	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	81	0	0	NA	exonic	Hmgxb3	nonsynonymous SNV	"Hmgxb3:NM_178277:exon15:c.T2573A:p.L858Q,Hmgxb3:NM_134134:exon16:c.T2477A:p.L826Q"	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999829	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	61299670	12A2p6	cell line	sgMsh2	61299670	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	88	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon11:c.A2860G:p.T954A,Ppargc1b:NM_001364996:exon12:c.A2908G:p.T970A"	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	63926639	12A2p6	cell line	sgMsh2	63926639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	59	0	0	NA	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon23:c.A3793G:p.T1265A,Wdr7:NM_001014981:exon24:c.A3889G:p.T1297A"	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
SSC_p20	chr18	64386492	12A2p6	cell line	sgMsh2	64386492	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	exonic	Onecut2	nonsynonymous SNV	Onecut2:NM_194268:exon2:c.T1379G:p.I460S	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	65349901	12A2p6	cell line	sgMsh2	65349901	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	134	0	0	NA	exonic	Alpk2	synonymous SNV	Alpk2:NM_001037294:exon4:c.C1035T:p.S345S	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr18	65451559	12A2p6	cell line	sgMsh2	65451559	A	G	SNV	Mutect2;Vardict	2	0.087	49	0	0	NA	exonic	Malt1	nonsynonymous SNV	"Malt1:NM_172833:exon7:c.A965G:p.N322S,Malt1:NM_001365019:exon8:c.A998G:p.N333S"	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.513020292	2	0.9131619	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	65957083	12A2p6	cell line	sgMsh2	65957083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	60	0	0	NA	exonic	Cplx4	nonsynonymous SNV	Cplx4:NM_145493:exon3:c.G264A:p.M88I	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9974349	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	66859714	12A2p6	cell line	sgMsh2	66859714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	105	0	0	NA	exonic	Mc4r	synonymous SNV	Mc4r:NM_016977:exon1:c.T327C:p.S109S	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	TAC	synonymous	ATCCGT	13	ATCCGTATCCGTA	NA
SSC_p20	chr18	67310692	12A2p6	cell line	sgMsh2	67310692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	35	0	0	NA	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon5:c.A433T:p.T145S	18qE1	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9985232	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	73970397	12A2p6	cell line	sgMsh2	73970397	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	77	0	0	NA	exonic	Mapk4	nonsynonymous SNV	Mapk4:NM_172632:exon2:c.T40A:p.Y14N	18qE2	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999748	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	76858635	12A2p6	cell line	sgMsh2	76858635	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	46	0	0	NA	exonic	Skor2	synonymous SNV	Skor2:NM_001109743:exon2:c.A51G:p.P17P	18qE3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.648646346	1	0.6541323	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr18	79086842	12A2p6	cell line	sgMsh2	79086842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	82	0	0	NA	exonic	Setbp1	synonymous SNV	Setbp1:NM_053099:exon2:c.A174G:p.S58S	18qE3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr18	80449667	12A2p6	cell line	sgMsh2	80449667	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	85	0	0	NA	exonic	Ctdp1	nonsynonymous SNV	Ctdp1:NM_026295:exon8:c.A1612G:p.S538G	18qE3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999884	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr18	80971684	12A2p6	cell line	sgMsh2	80971684	T	-	Deletion	Strelka2;Vardict	2	0.2903	31	0	0	NA	exonic	Sall3	frameshift deletion	Sall3:NM_001369133:exon2:c.3028delA:p.S1010Vfs*30	18qE3	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	89	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	3362184	12A2p6	cell line	sgMsh2	3362184	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	173	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon6:c.T655A:p.W219R	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	137	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	171	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	3659246	12A2p6	cell line	sgMsh2	3659246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon2:c.T483C:p.H161H	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	4290661	12A2p6	cell line	sgMsh2	4290661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	231	0	0	NA	exonic	Grk2	nonsynonymous SNV	"Grk2:NM_001290818:exon10:c.A769G:p.M257V,Grk2:NM_130863:exon11:c.A643G:p.M215V"	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	4450969	12A2p6	cell line	sgMsh2	4450969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	138	0	0	NA	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1052G:p.N351S	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	4460795	12A2p6	cell line	sgMsh2	4460795	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	67	0	0	NA	exonic	Syt12	frameshift deletion	Syt12:NM_134164:exon3:c.50delC:p.P17Qfs*20	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr19	4613371	12A2p6	cell line	sgMsh2	4613371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	44	0	0	NA	exonic	Lrfn4	synonymous SNV	Lrfn4:NM_153388:exon2:c.T1134C:p.S378S	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.671	84	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	4867582	12A2p6	cell line	sgMsh2	4867582	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	341	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon11:c.A1232C:p.K411T	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	129	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	4918080	12A2p6	cell line	sgMsh2	4918080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	163	0	0	NA	exonic	Dpp3	nonsynonymous SNV	"Dpp3:NM_001360711:exon8:c.T869C:p.I290T,Dpp3:NM_133803:exon8:c.T869C:p.I290T"	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5026399	12A2p6	cell line	sgMsh2	5026399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	136	0	0	NA	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon4:c.T314C:p.I105T	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5480730	12A2p6	cell line	sgMsh2	5480730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	131	0	0	NA	exonic	Efemp2	nonsynonymous SNV	"Efemp2:NM_001164352:exon9:c.T1216G:p.F406V,Efemp2:NM_001374680:exon10:c.T1195G:p.F399V,Efemp2:NM_021474:exon10:c.T1159G:p.F387V"	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	159	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5672533	12A2p6	cell line	sgMsh2	5672533	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon26:c.C4130T:p.A1377V	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	151	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	5884465	12A2p6	cell line	sgMsh2	5884465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	91	0	0	NA	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_001361974:exon5:c.A286G:p.I96V,Slc25a45:NM_134154:exon5:c.A460G:p.I154V,Slc25a45:NM_001361973:exon6:c.A460G:p.I154V"	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	6011343	12A2p6	cell line	sgMsh2	6011343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	80	0	0	NA	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon5:c.C544A:p.Q182K,Capn1:NM_007600:exon5:c.C544A:p.Q182K"	19qA	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	6076952	12A2p6	cell line	sgMsh2	6076952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	47	0	0	NA	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon1:c.A227G:p.K76R	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	55	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.571988141	2	0.8402515	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994913	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	6960166	12A2p6	cell line	sgMsh2	6960166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	322	0	0	NA	exonic	Plcb3	nonsynonymous SNV	"Plcb3:NM_001290349:exon16:c.A1883G:p.E628G,Plcb3:NM_008874:exon16:c.A1883G:p.E628G"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	0.978866304	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	7014850	12A2p6	cell line	sgMsh2	7014850	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	61	0	0	NA	exonic	Fermt3	nonsynonymous SNV	"Fermt3:NM_001362399:exon3:c.A161G:p.N54S,Fermt3:NM_153795:exon3:c.A161G:p.N54S"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	7271479	12A2p6	cell line	sgMsh2	7271479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	69	0	0	NA	exonic	Rcor2	synonymous SNV	"Rcor2:NM_001320554:exon8:c.A816G:p.A272A,Rcor2:NM_054048:exon9:c.A816G:p.A272A"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr19	8071028	12A2p6	cell line	sgMsh2	8071028	A	T	SNV	Mutect2;Vardict	2	0.033	215	0	0	NA	exonic	Slc22a28	nonsynonymous SNV	Slc22a28:NM_001013820:exon7:c.T1253A:p.I418N	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.194593904	3	1.07E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	8945845	12A2p6	cell line	sgMsh2	8945845	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	223	0	0	NA	exonic	Mta2	frameshift deletion	Mta2:NM_011842:exon4:c.280delT:p.F94Lfs*8	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr19	9016193	12A2p6	cell line	sgMsh2	9016193	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	234	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14840T:p.N4947I	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.122	50	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.719407765	1	0.8745454	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	10200637	12A2p6	cell line	sgMsh2	10200637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	87	0	0	NA	exonic	Fen1	nonsynonymous SNV	"Fen1:NM_001271614:exon2:c.A442G:p.M148V,Fen1:NM_001271615:exon2:c.A442G:p.M148V,Fen1:NM_007999:exon3:c.A442G:p.M148V"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	10218466	12A2p6	cell line	sgMsh2	10218466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	89	0	0	NA	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon12:c.G1789A:p.E597K	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.83144668	1	0.9950651	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	10219798	12A2p6	cell line	sgMsh2	10219798	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	308	0	0	NA	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon9:c.T1385C:p.V462A	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.188697119	3	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	10444168	12A2p6	cell line	sgMsh2	10444168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	220	0	0	NA	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon8:c.A1091G:p.N364S,Syt7:NM_173067:exon9:c.A1223G:p.N408S,Syt7:NM_173068:exon10:c.A1583G:p.N528S,Syt7:NM_001373944:exon11:c.A1715G:p.N572S"	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9999626	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	123	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.73709812	1	0.7601766	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	109	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6055094-11102233	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.999984	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr19	11251812	12A2p6	cell line	sgMsh2	11251812	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	219	0	0	NA	exonic	Ms4a1	synonymous SNV	Ms4a1:NM_007641:exon7:c.A729C:p.L243L	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	1.11E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr19	11283759	12A2p6	cell line	sgMsh2	11283759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	257	0	0	NA	exonic	Ms4a5	nonsynonymous SNV	Ms4a5:NM_183190:exon1:c.T35C:p.L12P	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	12088088	12A2p6	cell line	sgMsh2	12088088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	428	0	0	NA	exonic	Olfr1426	nonsynonymous SNV	Olfr1426:NM_146809:exon3:c.A703G:p.I235V	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	1	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	12209969	12A2p6	cell line	sgMsh2	12209969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	703	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.A402G:p.S134S	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	1	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	12462428	12A2p6	cell line	sgMsh2	12462428	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.071	270	0	0	NA	exonic	Mpeg1	frameshift deletion	"Mpeg1:NM_001374668:exon2:c.1228delC:p.P411Lfs*77,Mpeg1:NM_010821:exon2:c.1228delC:p.P411Lfs*77"	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.418671732	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr19	12588068	12A2p6	cell line	sgMsh2	12588068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	242	0	0	NA	exonic	Fam111a	nonsynonymous SNV	"Fam111a:NM_001346545:exon3:c.T1180C:p.Y394H,Fam111a:NM_026640:exon4:c.T1312C:p.Y438H"	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	12764157	12A2p6	cell line	sgMsh2	12764157	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	167	0	0	NA	exonic	Cntf	nonsynonymous SNV	Cntf:NM_170786:exon2:c.C338T:p.T113M	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.08E-09	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	12999847	12A2p6	cell line	sgMsh2	12999847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	198	0	0	NA	exonic	Olfr1451	nonsynonymous SNV	Olfr1451:NM_146705:exon1:c.T860G:p.V287G	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.20E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	13364669	12A2p6	cell line	sgMsh2	13364669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	220	0	0	NA	exonic	Olfr1467	synonymous SNV	Olfr1467:NM_146691:exon1:c.C40T:p.L14L	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	1.94E-09	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	13364760	12A2p6	cell line	sgMsh2	13364760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	274	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T131C:p.M44T	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	13454083	12A2p6	cell line	sgMsh2	13454083	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	504	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T433C:p.C145R	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	1.00E-09	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
SSC_p20	chr19	13502626	12A2p6	cell line	sgMsh2	13502626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	882	0	0	NA	exonic	Olfr1477	synonymous SNV	Olfr1477:NM_146696:exon2:c.T282C:p.N94N	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	1	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr19	13585935	12A2p6	cell line	sgMsh2	13585935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	679	0	0	NA	exonic	Olfr1484	synonymous SNV	Olfr1484:NM_146291:exon1:c.A630G:p.L210L	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	1	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	13586101	12A2p6	cell line	sgMsh2	13586101	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	702	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.T796A:p.S266T	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	13654758	12A2p6	cell line	sgMsh2	13654758	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.164	268	0	0	NA	exonic	Olfr1490	frameshift insertion	Olfr1490:NM_001011832:exon1:c.314dupT:p.G106Wfs*3	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC_p20	chr19	13705156	12A2p6	cell line	sgMsh2	13705156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	339	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A328G:p.T110A	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	13861984	12A2p6	cell line	sgMsh2	13861984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	376	0	0	NA	exonic	Olfr1502	nonsynonymous SNV	Olfr1502:NM_146797:exon1:c.A190G:p.S64G	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	13919023	12A2p6	cell line	sgMsh2	13919023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	281	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.T2G:p.M1R	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	226	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	1	0.9498696	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	316	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	1	0.9997915	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	17330062	12A2p6	cell line	sgMsh2	17330062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	171	0	0	NA	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.T298C:p.C100R,Gcnt1:NM_010265:exon3:c.T298C:p.C100R,Gcnt1:NM_173442:exon3:c.T298C:p.C100R"	19qB	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	9.47E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	21276480	12A2p6	cell line	sgMsh2	21276480	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.227	93	0	0	NA	exonic	Zfand5	nonsynonymous SNV	Zfand5:NM_009551:exon2:c.A46G:p.T16A	19qB	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	21428623	12A2p6	cell line	sgMsh2	21428623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	119	0	0	NA	exonic	Gda	synonymous SNV	Gda:NM_010266:exon3:c.T240C:p.D80D	19qB	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	21815516	12A2p6	cell line	sgMsh2	21815516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	130	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon11:c.C2135T:p.P712L,Cemip2:NM_031997:exon12:c.C2135T:p.P712L"	19qB	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.672233486	2	0.9297139	CCG	nonsynonymous	ACTC	8	ACTCACTC	NA
SSC_p20	chr19	21847964	12A2p6	cell line	sgMsh2	21847964	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	198	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon21:c.A3625C:p.S1209R,Cemip2:NM_031997:exon22:c.A3625C:p.S1209R"	19qB	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.20E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	25673850	12A2p6	cell line	sgMsh2	25673850	C	A	SNV	Mutect2;MuSe;Vardict	3	0.294	17	0	0	NA	exonic	Dmrt2	synonymous SNV	Dmrt2:NM_145831:exon2:c.C399A:p.S133S	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9915948	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	26649132	12A2p6	cell line	sgMsh2	26649132	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.18	132	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1355G:p.E452G	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	26649134	12A2p6	cell line	sgMsh2	26649134	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.18	132	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1357G:p.R453G	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	228	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.7842724	1	0.9836284	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	28905451	12A2p6	cell line	sgMsh2	28905451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	205	0	0	NA	exonic	Slc1a1	nonsynonymous SNV	Slc1a1:NM_009199:exon10:c.T1114A:p.Y372N	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	1	0.9986348	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	29437473	12A2p6	cell line	sgMsh2	29437473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	96	0	0	NA	exonic	Pdcd1lg2	nonsynonymous SNV	Pdcd1lg2:NM_021396:exon3:c.A299G:p.Y100C	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.560194571	2	0.9967069	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	29602644	12A2p6	cell line	sgMsh2	29602644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon25:c.A3844G:p.I1282V	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	30116427	12A2p6	cell line	sgMsh2	30116427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	150	0	0	NA	exonic	Gldc	nonsynonymous SNV	Gldc:NM_138595:exon18:c.A2189G:p.Y730C	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9996454	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	31083935	12A2p6	cell line	sgMsh2	31083935	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	122	0	0	NA	exonic	Cstf2t	synonymous SNV	Cstf2t:NM_031249:exon1:c.C870A:p.S290S	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	31917996	12A2p6	cell line	sgMsh2	31917996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	208	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.A478C:p.T160P,A1cf:NM_001365078:exon5:c.A478C:p.T160P"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	3.46E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	31920923	12A2p6	cell line	sgMsh2	31920923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon6:c.A706G:p.R236G,A1cf:NM_001365078:exon6:c.A706G:p.R236G"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9999072	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	33776763	12A2p6	cell line	sgMsh2	33776763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	153	0	0	NA	exonic	Lipo1	nonsynonymous SNV	Lipo1:NM_001323065:exon9:c.A971G:p.N324S	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.68E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	33964871	12A2p6	cell line	sgMsh2	33964871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	140	0	0	NA	exonic	Lipf	nonsynonymous SNV	Lipf:NM_026334:exon3:c.A200G:p.K67R	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAG	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr19	34112952	12A2p6	cell line	sgMsh2	34112952	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	262	0	0	NA	exonic	Lipm	frameshift deletion	Lipm:NM_023903:exon5:c.532delA:p.K179Rfs*23	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.79606597	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr19	34495079	12A2p6	cell line	sgMsh2	34495079	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	83	0	0	NA	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon9:c.A941T:p.N314I,Lipa:NM_021460:exon9:c.A941T:p.N314I"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9996978	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	34573176	12A2p6	cell line	sgMsh2	34573176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	221	0	0	NA	exonic	Ifit2	nonsynonymous SNV	"Ifit2:NM_001355262:exon3:c.T115C:p.F39L,Ifit2:NM_008332:exon3:c.T115C:p.F39L"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	230	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	NA	NA	CAA	frameshift	C	5	CCCCC	-1
SSC_p20	chr19	34588266	12A2p6	cell line	sgMsh2	34588266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	333	0	0	NA	exonic	Ifit3	stoploss	Ifit3:NM_010501:exon2:c.A1211G:p.X404W	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.406878162	2	0.9999985	TAG	nonsynonymous	AGCA	8	AGCAAGCA	NA
SSC_p20	chr19	34593964	12A2p6	cell line	sgMsh2	34593964	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	847	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G1092T:p.L364F,Ifit1bl1:NM_001110517:exon2:c.G1092T:p.L364F"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.471742797	2	1	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	34594484	12A2p6	cell line	sgMsh2	34594484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	986	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.A572G:p.Y191C,Ifit1bl1:NM_001110517:exon2:c.A572G:p.Y191C"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.436362087	2	1	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	34594605	12A2p6	cell line	sgMsh2	34594605	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	904	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G451T:p.G151C,Ifit1bl1:NM_001110517:exon2:c.G451T:p.G151C"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.495329937	2	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	34620037	12A2p6	cell line	sgMsh2	34620037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.A178G:p.I60V,Ifit1bl2:NM_053217:exon3:c.A178G:p.I60V"	19qC1	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	37982988	12A2p6	cell line	sgMsh2	37982988	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	229	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon9:c.G815T:p.R272M,Myof:NM_001302140:exon9:c.G815T:p.R272M"	19qC2	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.742994905	1	0.5094056	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38057860	12A2p6	cell line	sgMsh2	38057860	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	182	0	0	NA	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon2:c.C60A:p.S20R,Cep55:NM_001164362:exon3:c.C60A:p.S20R,Cep55:NM_001360663:exon3:c.C60A:p.S20R,Cep55:NM_028760:exon3:c.C60A:p.S20R"	19qC2	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.83144668	1	0.9994943	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38158478	12A2p6	cell line	sgMsh2	38158478	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	167	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon10:c.C1333A:p.L445M,Pde6c:NM_033614:exon10:c.C1333A:p.L445M"	19qC2	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9982984	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38400469	12A2p6	cell line	sgMsh2	38400469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	148	0	0	NA	exonic	Slc35g1	nonsynonymous SNV	Slc35g1:NM_175507:exon2:c.T223A:p.L75M	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38701977	12A2p6	cell line	sgMsh2	38701977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	123	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon5:c.T2104C:p.F702L	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	142	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.790169185	1	0.983509	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38719591	12A2p6	cell line	sgMsh2	38719591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	147	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3123A:p.H1041Q	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.996556658	1	3.62E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	38945419	12A2p6	cell line	sgMsh2	38945419	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	242	0	0	NA	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon9:c.T683G:p.I228S	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	2.86E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	39093485	12A2p6	cell line	sgMsh2	39093485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	439	0	0	NA	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon9:c.T1454C:p.I485T	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	1	1	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	39638624	12A2p6	cell line	sgMsh2	39638624	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	294	0	0	NA	exonic	Cyp2c67	stopgain	Cyp2c67:NM_001024719:exon5:c.C761A:p.S254X	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	1.10E-09	TGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	40327547	12A2p6	cell line	sgMsh2	40327547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	91	0	0	NA	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon13:c.T1149C:p.N383N,Sorbs1:NM_001034962:exon15:c.T1239C:p.N413N,Sorbs1:NM_001034963:exon15:c.T1269C:p.N423N,Sorbs1:NM_009166:exon16:c.T1149C:p.N383N,Sorbs1:NM_178362:exon21:c.T1911C:p.N637N"	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.636852776	2	0.09494703	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	40585490	12A2p6	cell line	sgMsh2	40585490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	247	0	0	NA	exonic	Aldh18a1	nonsynonymous SNV	"Aldh18a1:NM_019698:exon3:c.A88C:p.N30H,Aldh18a1:NM_153554:exon3:c.A88C:p.N30H"	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	40962445	12A2p6	cell line	sgMsh2	40962445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	71	0	0	NA	exonic	Blnk	synonymous SNV	"Blnk:NM_001365054:exon5:c.T261C:p.P87P,Blnk:NM_008528:exon5:c.T261C:p.P87P"	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CAG	synonymous	GGCA	8	GGCAGGCA	NA
SSC_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	210	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-11105367-41721414	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	1.86E-08	GAC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	41925226	12A2p6	cell line	sgMsh2	41925226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	90	0	0	NA	exonic	Exosc1	nonsynonymous SNV	"Exosc1:NM_001164561:exon4:c.A236G:p.K79R,Exosc1:NM_001320233:exon5:c.A74G:p.K25R,Exosc1:NM_025644:exon6:c.A359G:p.K120R"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	41928081	12A2p6	cell line	sgMsh2	41928081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	259	0	0	NA	exonic	Exosc1	synonymous SNV	"Exosc1:NM_001320231:exon4:c.A255G:p.V85V,Exosc1:NM_001320232:exon4:c.A255G:p.V85V,Exosc1:NM_025644:exon4:c.A255G:p.V85V"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr19	43759909	12A2p6	cell line	sgMsh2	43759909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	151	0	0	NA	exonic	Cutc	nonsynonymous SNV	"Cutc:NM_001113562:exon4:c.C250T:p.R84C,Cutc:NM_025530:exon4:c.C250T:p.R84C"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	43821736	12A2p6	cell line	sgMsh2	43821736	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	262	0	0	NA	exonic	Abcc2	nonsynonymous SNV	Abcc2:NM_013806:exon20:c.T2732A:p.L911Q	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.188697119	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	44948025	12A2p6	cell line	sgMsh2	44948025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	262	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon7:c.A2108G:p.D703G,Slf2:NM_172638:exon7:c.A173G:p.D58G"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GAT	nonsynonymous	TGATGG	12	TGATGGTGATGG	NA
SSC_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	117	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	100	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	46005998	12A2p6	cell line	sgMsh2	46005998	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	207	0	0	NA	exonic	Hps6	synonymous SNV	Hps6:NM_176785:exon1:c.A2373G:p.P791P	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	3.77E-08	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr19	46310251	12A2p6	cell line	sgMsh2	46310251	G	T	SNV	Mutect2;Vardict	2	0.023	227	0	0	NA	exonic	Nfkb2	nonsynonymous SNV	"Nfkb2:NM_001177370:exon16:c.G1842T:p.E614D,Nfkb2:NM_019408:exon16:c.G1842T:p.E614D,Nfkb2:NM_001177369:exon17:c.G1842T:p.E614D"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.135626054	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	73	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.996556658	1	0.9999587	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	46330185	12A2p6	cell line	sgMsh2	46330185	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	93	0	0	NA	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T905G:p.L302W,Fbxl15:NM_133694:exon4:c.T797G:p.L266W"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	46542408	12A2p6	cell line	sgMsh2	46542408	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	126	0	0	NA	exonic	Arl3	nonsynonymous SNV	"Arl3:NM_001355233:exon5:c.C445T:p.R149W,Arl3:NM_019718:exon5:c.C445T:p.R149W"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.359703883	2	0.7535072	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	222	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9999935	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	47075043	12A2p6	cell line	sgMsh2	47075043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	216	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon3:c.A1031G:p.D344G	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	47103823	12A2p6	cell line	sgMsh2	47103823	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.179	202	0	0	NA	exonic	Pdcd11	synonymous SNV	Pdcd11:NM_011053:exon10:c.T1257C:p.C419C	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.14E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	143	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.999983	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	188	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9999963	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	47653380	12A2p6	cell line	sgMsh2	47653380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	133	0	0	NA	exonic	Col17a1	synonymous SNV	"Col17a1:NM_001290825:exon41:c.A2829G:p.P943P,Col17a1:NM_007732:exon41:c.A2829G:p.P943P"	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.695820625	2	0.7966909	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr19	47983668	12A2p6	cell line	sgMsh2	47983668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	116	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon13:c.T2036C:p.L679P	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	1	0.9999988	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	48487395	12A2p6	cell line	sgMsh2	48487395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	183	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon3:c.T692C:p.V231A	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9950075	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	50225226	12A2p6	cell line	sgMsh2	50225226	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	87	0	0	NA	exonic	Sorcs1	frameshift deletion	"Sorcs1:NM_001252501:exon16:c.2062delG:p.E688Kfs*93,Sorcs1:NM_001290356:exon16:c.2062delG:p.E688Kfs*93,Sorcs1:NM_001360457:exon16:c.2062delG:p.E688Kfs*92,Sorcs1:NM_021377:exon16:c.2062delG:p.E688Kfs*93"	19qD1	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr19	53623568	12A2p6	cell line	sgMsh2	53623568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	123	0	0	NA	exonic	Smc3	synonymous SNV	Smc3:NM_007790:exon12:c.A1071G:p.K357K	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.719407765	1	0.5544144	AAG	synonymous	AAAAGA	13	AAAAGAAAAAGAA	NA
SSC_p20	chr19	53625096	12A2p6	cell line	sgMsh2	53625096	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	95	0	0	NA	exonic	Smc3	nonsynonymous SNV	Smc3:NM_007790:exon13:c.T1239G:p.I413M	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.625059206	2	0.9513169	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	109	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.7997286	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	55623900	12A2p6	cell line	sgMsh2	55623900	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	335	0	0	NA	exonic	Vti1a	nonsynonymous SNV	"Vti1a:NM_016862:exon8:c.A644C:p.K215T,Vti1a:NM_001293685:exon9:c.A665C:p.K222T"	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9999723	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	56327234	12A2p6	cell line	sgMsh2	56327234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	227	0	0	NA	exonic	Nrap	synonymous SNV	"Nrap:NM_001286552:exon36:c.T4140C:p.D1380D,Nrap:NM_198059:exon37:c.T4383C:p.D1461D,Nrap:NM_008733:exon38:c.T4488C:p.D1496D"	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9999947	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr19	56848901	12A2p6	cell line	sgMsh2	56848901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	151	0	0	NA	exonic	Tdrd1	nonsynonymous SNV	"Tdrd1:NM_001002241:exon12:c.A1556G:p.Q519R,Tdrd1:NM_001002238:exon13:c.A1556G:p.Q519R,Tdrd1:NM_001002240:exon13:c.A1556G:p.Q519R,Tdrd1:NM_031387:exon13:c.A1556G:p.Q519R"	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	150	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	58805445	12A2p6	cell line	sgMsh2	58805445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	111	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon9:c.T983C:p.I328T,Hspa12a:NM_001327998:exon10:c.T1037C:p.I346T"	19qD2	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.73709812	1	0.7934239	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	60543015	12A2p6	cell line	sgMsh2	60543015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	177	0	0	NA	exonic	Cacul1	nonsynonymous SNV	"Cacul1:NM_001172096:exon5:c.T815C:p.L272P,Cacul1:NM_001172097:exon5:c.T815C:p.L272P,Cacul1:NM_030197:exon5:c.T815C:p.L272P"	19qD3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	0.9999996	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr19	60771096	12A2p6	cell line	sgMsh2	60771096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	198	0	0	NA	exonic	Eif3a	synonymous SNV	Eif3a:NM_010123:exon15:c.T2238C:p.H746H	19qD3	chr19-41726766-61227351	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.20E-09	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	123	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	3502535	12A2p6	cell line	sgMsh2	3502535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	61	0	0	NA	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon4:c.A194T:p.N65I,Hspa14:NM_015765:exon5:c.A335T:p.N112I"	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	5362084	12A2p6	cell line	sgMsh2	5362084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	93	0	0	NA	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon3:c.T268G:p.F90V,Camk1d:NM_001290375:exon4:c.T343G:p.F115V,Camk1d:NM_001290376:exon4:c.T319G:p.F107V,Camk1d:NM_177343:exon4:c.T343G:p.F115V"	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	6408951	12A2p6	cell line	sgMsh2	6408951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	exonic	Usp6nl	nonsynonymous SNV	"Usp6nl:NM_181399:exon5:c.G287T:p.R96M,Usp6nl:NM_001080548:exon6:c.G218T:p.R73M"	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.04E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	12978397	12A2p6	cell line	sgMsh2	12978397	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	153	0	0	NA	exonic	Pter	frameshift deletion	"Pter:NM_001305436:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_008961:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_001305437:exon3:c.248delT:p.Q84Sfs*1"	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr2	13282909	12A2p6	cell line	sgMsh2	13282909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	184	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon64:c.T10358C:p.L3453S	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.78E-09	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	13476167	12A2p6	cell line	sgMsh2	13476167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	81	0	0	NA	exonic	Cubn	synonymous SNV	Cubn:NM_001081084:exon9:c.T876C:p.G292G	2qA1	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999829	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	19201796	12A2p6	cell line	sgMsh2	19201796	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	194	0	0	NA	exonic	Armc3	frameshift deletion	"Armc3:NM_001081083:exon2:c.29delA:p.E10Dfs*22,Armc3:NM_001271563:exon2:c.29delA:p.E10Dfs*22,Armc3:NM_001271564:exon2:c.29delA:p.E10Dfs*22,Armc3:NM_001271565:exon2:c.29delA:p.E10Dfs*22"	2qA3	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr2	20850321	12A2p6	cell line	sgMsh2	20850321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	130	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon24:c.C4229A:p.A1410D,Arhgap21:NM_001128084:exon25:c.C4259A:p.A1420D"	2qA3	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	117	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-24280013	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	24758304	12A2p6	cell line	sgMsh2	24758304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	80	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon3:c.G508A:p.D170N,Cacna1b:NM_007579:exon3:c.G508A:p.D170N"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25059023	12A2p6	cell line	sgMsh2	25059023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	68	0	0	NA	exonic	Nsmf	nonsynonymous SNV	"Nsmf:NM_020276:exon5:c.A719G:p.N240S,Nsmf:NM_001039387:exon6:c.A782G:p.N261S,Nsmf:NM_001177654:exon6:c.A782G:p.N261S,Nsmf:NM_001177655:exon6:c.A782G:p.N261S,Nsmf:NM_001039386:exon7:c.A788G:p.N263S"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	99	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25201148	12A2p6	cell line	sgMsh2	25201148	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	91	0	0	NA	exonic	Nelfb	nonsynonymous SNV	"Nelfb:NM_001310157:exon10:c.C1069A:p.L357I,Nelfb:NM_021393:exon11:c.C1528A:p.L510I"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25222364	12A2p6	cell line	sgMsh2	25222364	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	164	0	0	NA	exonic	Tubb4b	nonsynonymous SNV	Tubb4b:NM_146116:exon4:c.G1282A:p.A428T	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	6.45E-09	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25231426	12A2p6	cell line	sgMsh2	25231426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	135	0	0	NA	exonic	Slc34a3	frameshift deletion	"Slc34a3:NM_080854:exon8:c.838delG:p.E280Rfs*72,Slc34a3:NM_001362748:exon9:c.658delG:p.E220Rfs*72"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr2	25313489	12A2p6	cell line	sgMsh2	25313489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	61	0	0	NA	exonic	Grin1	nonsynonymous SNV	"Grin1:NM_001177656:exon3:c.A509G:p.D170G,Grin1:NM_001177657:exon3:c.A509G:p.D170G,Grin1:NM_001372558:exon3:c.A509G:p.D170G,Grin1:NM_001372559:exon3:c.A509G:p.D170G,Grin1:NM_001372560:exon3:c.A509G:p.D170G,Grin1:NM_001372561:exon3:c.A509G:p.D170G,Grin1:NM_001372562:exon3:c.A509G:p.D170G,Grin1:NM_008169:exon3:c.A509G:p.D170G"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25425536	12A2p6	cell line	sgMsh2	25425536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	63	0	0	NA	exonic	Fut7	nonsynonymous SNV	"Fut7:NM_001177366:exon2:c.T805C:p.Y269H,Fut7:NM_001177367:exon3:c.T664C:p.Y222H,Fut7:NM_001289455:exon3:c.T664C:p.Y222H,Fut7:NM_013524:exon3:c.T664C:p.Y222H,Fut7:NM_001289453:exon4:c.T664C:p.Y222H,Fut7:NM_001289454:exon4:c.T664C:p.Y222H,Fut7:NM_001289456:exon4:c.T664C:p.Y222H"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999021	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	41	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9991742	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25435255	12A2p6	cell line	sgMsh2	25435255	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	79	0	0	NA	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon8:c.C1263T:p.N421N,Abca2:NM_007379:exon8:c.C1260T:p.N420N"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	ACC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	25438838	12A2p6	cell line	sgMsh2	25438838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	47	0	0	NA	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon19:c.A2793G:p.L931L,Abca2:NM_007379:exon19:c.A2790G:p.L930L"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	25493787	12A2p6	cell line	sgMsh2	25493787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	107	0	0	NA	exonic	Lcn12	nonsynonymous SNV	Lcn12:NM_029958:exon1:c.A70G:p.M24V	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25706992	12A2p6	cell line	sgMsh2	25706992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	42	0	0	NA	exonic	Bmyc	nonsynonymous SNV	Bmyc:NM_023326:exon1:c.T67C:p.F23L	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	25939739	12A2p6	cell line	sgMsh2	25939739	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	0	0	NA	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T1972G:p.F658V,Camsap1:NM_001276360:exon12:c.T2005G:p.F669V,Camsap1:NM_001276361:exon12:c.T2032G:p.F678V,Camsap1:NM_001372499:exon12:c.T2005G:p.F669V"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	26385535	12A2p6	cell line	sgMsh2	26385535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	212	0	0	NA	exonic	Entr1	nonsynonymous SNV	"Entr1:NM_001085408:exon5:c.T743C:p.V248A,Entr1:NM_001085407:exon6:c.T812C:p.V271A,Entr1:NM_026563:exon7:c.T962C:p.V321A"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.05E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	26435966	12A2p6	cell line	sgMsh2	26435966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	124	0	0	NA	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.A3698C:p.E1233A	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9999899	CTC	nonsynonymous	GCTCAG	12	GCTCAGGCTCAG	NA
SSC_p20	chr2	26467942	12A2p6	cell line	sgMsh2	26467942	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	46	0	0	NA	exonic	Notch1	nonsynonymous SNV	Notch1:NM_008714:exon26:c.C4675A:p.L1559I	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994913	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	26935351	12A2p6	cell line	sgMsh2	26935351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	91	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon2:c.A53G:p.N18S,Stkld1:NM_001379464:exon2:c.A53G:p.N18S,Stkld1:NM_198628:exon2:c.A29G:p.N10S"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999935	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	26950091	12A2p6	cell line	sgMsh2	26950091	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	87	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon13:c.C1196T:p.T399I,Stkld1:NM_001379464:exon13:c.C1196T:p.T399I,Stkld1:NM_198628:exon13:c.C1172T:p.T391I"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	26973545	12A2p6	cell line	sgMsh2	26973545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	57	0	0	NA	exonic	Adamts13	synonymous SNV	"Adamts13:NM_001001322:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290463:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290464:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290465:exon1:c.G9A:p.Q3Q"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	26983866	12A2p6	cell line	sgMsh2	26983866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	113	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon10:c.T1126A:p.C376S,Adamts13:NM_001290463:exon10:c.T1126A:p.C376S,Adamts13:NM_001290464:exon10:c.T1126A:p.C376S,Adamts13:NM_001290465:exon10:c.T1126A:p.C376S"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	27268177	12A2p6	cell line	sgMsh2	27268177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	0	0	NA	exonic	Vav2	nonsynonymous SNV	Vav2:NM_009500:exon26:c.A2378G:p.Q793R	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	CTG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	96	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	29146137	12A2p6	cell line	sgMsh2	29146137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	189	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon10:c.T2633C:p.L878P	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.48E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	29179716	12A2p6	cell line	sgMsh2	29179716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	210	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon26:c.T7532C:p.L2511P	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.06E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	29689110	12A2p6	cell line	sgMsh2	29689110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	107	0	0	NA	exonic	Rapgef1	synonymous SNV	"Rapgef1:NM_001039086:exon4:c.A381G:p.S127S,Rapgef1:NM_001362702:exon4:c.A381G:p.S127S,Rapgef1:NM_001039087:exon5:c.A495G:p.S165S,Rapgef1:NM_054050:exon5:c.A495G:p.S165S"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	29809908	12A2p6	cell line	sgMsh2	29809908	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	322	0	0	NA	exonic	Slc27a4	frameshift deletion	Slc27a4:NM_011989:exon6:c.858delC:p.L288Sfs*18	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	80	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	112	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999992	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	30350680	12A2p6	cell line	sgMsh2	30350680	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	105	0	0	NA	exonic	Sh3glb2	synonymous SNV	"Sh3glb2:NM_001289709:exon4:c.C372G:p.R124R,Sh3glb2:NM_001289710:exon4:c.C372G:p.R124R,Sh3glb2:NM_001346806:exon4:c.C372G:p.R124R,Sh3glb2:NM_001362888:exon4:c.C372G:p.R124R,Sh3glb2:NM_139302:exon4:c.C372G:p.R124R"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	30376735	12A2p6	cell line	sgMsh2	30376735	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	141	0	0	NA	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon8:c.T883G:p.S295A,Miga2:NM_001378906:exon8:c.T883G:p.S295A,Miga2:NM_001378907:exon8:c.T883G:p.S295A,Miga2:NM_001378909:exon8:c.T310G:p.S104A,Miga2:NM_001378911:exon8:c.T310G:p.S104A,Miga2:NM_175392:exon8:c.T883G:p.S295A"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	31912023	12A2p6	cell line	sgMsh2	31912023	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	107	0	0	NA	exonic	Lamc3	nonsynonymous SNV	Lamc3:NM_011836:exon8:c.A1442T:p.H481L	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32096059	12A2p6	cell line	sgMsh2	32096059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	0	0	NA	exonic	Plpp7	nonsynonymous SNV	"Plpp7:NM_001355238:exon1:c.A248G:p.N83S,Plpp7:NM_145521:exon1:c.A248G:p.N83S"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	249	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	10	0	0	NA	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9834505	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32578166	12A2p6	cell line	sgMsh2	32578166	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	118	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.G469T:p.G157C,Pip5kl1:NM_001379021:exon4:c.G178T:p.G60C,Pip5kl1:NM_198191:exon4:c.G343T:p.G115C"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32578965	12A2p6	cell line	sgMsh2	32578965	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	281	0	0	NA	exonic	Pip5kl1	frameshift deletion	"Pip5kl1:NM_001379020:exon6:c.721delA:p.K242Rfs*27,Pip5kl1:NM_001379021:exon6:c.430delA:p.K145Rfs*27,Pip5kl1:NM_198191:exon6:c.595delA:p.K200Rfs*27"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr2	32708204	12A2p6	cell line	sgMsh2	32708204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	158	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon7:c.A839T:p.K280M	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	75	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	32761588	12A2p6	cell line	sgMsh2	32761588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	exonic	Tor2a	nonsynonymous SNV	"Tor2a:NM_001369225:exon4:c.G686A:p.R229H,Tor2a:NM_001369222:exon5:c.G817A:p.V273I,Tor2a:NM_001369223:exon5:c.G811A:p.V271I,Tor2a:NM_001369224:exon5:c.G818A:p.R273H,Tor2a:NM_152800:exon5:c.G814A:p.V272I"	2qB	chr2-24280505-33011764	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	34812818	12A2p6	cell line	sgMsh2	34812818	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	56	0	0	NA	exonic	Fbxw2	frameshift deletion	"Fbxw2:NM_001164768:exon2:c.682delG:p.A228Rfs*14,Fbxw2:NM_001164769:exon4:c.682delG:p.A228Rfs*14,Fbxw2:NM_001164770:exon4:c.295delG:p.A99Rfs*14,Fbxw2:NM_001164772:exon4:c.682delG:p.A228Rfs*45,Fbxw2:NM_001379115:exon4:c.295delG:p.A99Rfs*14,Fbxw2:NM_001379116:exon4:c.295delG:p.A99Rfs*34,Fbxw2:NM_001379117:exon4:c.682delG:p.A228Rfs*34,Fbxw2:NM_001379118:exon4:c.682delG:p.A228Rfs*14,Fbxw2:NM_013890:exon4:c.682delG:p.A228Rfs*14"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr2	35160372	12A2p6	cell line	sgMsh2	35160372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	98	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon17:c.A2840G:p.Q947R,Cntrl:NM_001379274:exon27:c.A4499G:p.Q1500R,Cntrl:NM_012018:exon27:c.A4496G:p.Q1499R"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.719407765	1	0.6918267	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	66	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999268	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	36859777	12A2p6	cell line	sgMsh2	36859777	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	211	0	0	NA	exonic	Olfr351	synonymous SNV	Olfr351:NM_146942:exon1:c.T570A:p.T190T	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.06E-09	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	36869860	12A2p6	cell line	sgMsh2	36869860	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.021	433	0	0	NA	exonic	Olfr352	nonsynonymous SNV	Olfr352:NM_146940:exon1:c.C293T:p.T98M	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.123832484	3	1	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	37085433	12A2p6	cell line	sgMsh2	37085433	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	290	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T314G:p.M105R	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	37202003	12A2p6	cell line	sgMsh2	37202003	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.263	275	0	0	NA	exonic	Olfr365	frameshift insertion	Olfr365:NM_146662:exon1:c.762dupT:p.G255Wfs*7	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAT	frameshift	NA	NA	NA	1
SSC_p20	chr2	37389708	12A2p6	cell line	sgMsh2	37389708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	162	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon11:c.T1508C:p.V503A,Rc3h2:NM_001290642:exon11:c.T1508C:p.V503A"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.442258872	2	0.9999782	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	37414545	12A2p6	cell line	sgMsh2	37414545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon3:c.T202C:p.F68L,Rc3h2:NM_001290642:exon3:c.T202C:p.F68L"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	37540510	12A2p6	cell line	sgMsh2	37540510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	74	0	0	NA	exonic	Rabgap1	nonsynonymous SNV	"Rabgap1:NM_001033960:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362956:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362957:exon16:c.T2062C:p.C688R,Rabgap1:NM_001362958:exon16:c.T1858C:p.C620R,Rabgap1:NM_146121:exon16:c.T2062C:p.C688R"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	38947312	12A2p6	cell line	sgMsh2	38947312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	116	0	0	NA	exonic	Olfml2a	nonsynonymous SNV	Olfml2a:NM_172854:exon3:c.A466G:p.T156A	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	40801423	12A2p6	cell line	sgMsh2	40801423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	110	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon66:c.C10383T:p.D3461D	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999999	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	40875037	12A2p6	cell line	sgMsh2	40875037	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	123	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon55:c.C8776A:p.H2926N	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	86	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999895	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
SSC_p20	chr2	41296069	12A2p6	cell line	sgMsh2	41296069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	93	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon26:c.A4261G:p.M1421V	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	41471003	12A2p6	cell line	sgMsh2	41471003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	61	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon13:c.A2129G:p.Y710C	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	41502112	12A2p6	cell line	sgMsh2	41502112	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.197	69	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon10:c.A1439G:p.Y480C	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999453	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	75	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Strelka2;Vardict	2	0.2069	58	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr2	43589396	12A2p6	cell line	sgMsh2	43589396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	48	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon4:c.T301C:p.Y101H,Kynu:NM_001289594:exon4:c.T301C:p.Y101H,Kynu:NM_027552:exon4:c.T301C:p.Y101H"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	43679978	12A2p6	cell line	sgMsh2	43679978	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	72	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon13:c.T1271G:p.V424G,Kynu:NM_027552:exon13:c.T1271G:p.V424G"	2qB	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	52111938	12A2p6	cell line	sgMsh2	52111938	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.297	123	0	0	NA	exonic	Rif1	synonymous SNV	"Rif1:NM_001355414:exon30:c.T5403C:p.A1801A,Rif1:NM_001355415:exon30:c.T5382C:p.A1794A,Rif1:NM_175238:exon30:c.T5403C:p.A1801A"	2qC1.1	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CTT	synonymous	CTTCC	10	CTTCCCTTCC	NA
SSC_p20	chr2	57305814	12A2p6	cell line	sgMsh2	57305814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	173	0	0	NA	exonic	Gpd2	nonsynonymous SNV	"Gpd2:NM_001145820:exon5:c.A406G:p.M136V,Gpd2:NM_010274:exon5:c.A406G:p.M136V"	2qC1.1	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.28E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	59354429	12A2p6	cell line	sgMsh2	59354429	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	198	0	0	NA	exonic	Pkp4	frameshift deletion	"Pkp4:NM_001362991:exon21:c.3416delC:p.P1140Rfs*12,Pkp4:NM_001362992:exon21:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362999:exon21:c.2531delC:p.P845Rfs*12,Pkp4:NM_175464:exon21:c.3425delC:p.P1143Rfs*12,Pkp4:NM_001362990:exon22:c.3548delC:p.P1184Rfs*12,Pkp4:NM_001362997:exon22:c.2531delC:p.P845Rfs*12,Pkp4:NM_026361:exon22:c.3554delC:p.P1186Rfs*12,Pkp4:NM_001362993:exon23:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362994:exon23:c.3110delC:p.P1038Rfs*12,Pkp4:NM_001362995:exon23:c.3107delC:p.P1037Rfs*12,Pkp4:NM_001362996:exon23:c.3107delC:p.P1037Rfs*12,Pkp4:NM_001362998:exon23:c.2531delC:p.P845Rfs*12"	2qC1.1	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC_p20	chr2	62705952	12A2p6	cell line	sgMsh2	62705952	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	80	0	0	NA	exonic	Kcnh7	synonymous SNV	Kcnh7:NM_133207:exon15:c.C3285A:p.S1095S	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	TGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	108	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
SSC_p20	chr2	63980530	12A2p6	cell line	sgMsh2	63980530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	99	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A395T:p.K132I,Fign:NM_001267846:exon4:c.A362T:p.K121I,Fign:NM_001267847:exon4:c.A362T:p.K121I"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	65460685	12A2p6	cell line	sgMsh2	65460685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	132	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon27:c.A5863G:p.T1955A,Scn3a:NM_001355167:exon27:c.A5812G:p.T1938A,Scn3a:NM_001355168:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355169:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355170:exon27:c.A5716G:p.T1906A,Scn3a:NM_001355171:exon27:c.A3958G:p.T1320A,Scn3a:NM_018732:exon27:c.A5716G:p.T1906A"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	149	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	66093613	12A2p6	cell line	sgMsh2	66093613	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	204	0	0	NA	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon7:c.T1310G:p.V437G	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.11E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	106	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr2	66757300	12A2p6	cell line	sgMsh2	66757300	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	140	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon2:c.C58T:p.L20F	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	67184585	12A2p6	cell line	sgMsh2	67184585	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	83	0	0	NA	exonic	Gm1322	nonsynonymous SNV	Gm1322:NM_001033477:exon2:c.A149T:p.N50I	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	AAC	nonsynonymous	CTTG	8	CTTGCTTG	NA
SSC_p20	chr2	67512510	12A2p6	cell line	sgMsh2	67512510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	131	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.A5094G:p.L1698L,Xirp2:NM_001083919:exon7:c.A5094G:p.L1698L"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	67516198	12A2p6	cell line	sgMsh2	67516198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	105	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A8782G:p.T2928A,Xirp2:NM_001083919:exon7:c.A8782G:p.T2928A"	2qC1.3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.524813862	2	0.9997059	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	69284628	12A2p6	cell line	sgMsh2	69284628	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	90	0	0	NA	exonic	Abcb11	nonsynonymous SNV	"Abcb11:NM_021022:exon16:c.G1973A:p.S658N,Abcb11:NM_001363492:exon17:c.G1973A:p.S658N"	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	207	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	69483430	12A2p6	cell line	sgMsh2	69483430	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	207	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon39:c.A6956C:p.D2319A	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	70000509	12A2p6	cell line	sgMsh2	70000509	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	120	0	0	NA	exonic	Ubr3	synonymous SNV	"Ubr3:NM_001303033:exon30:c.T4431C:p.G1477G,Ubr3:NM_177783:exon30:c.T4419C:p.G1473G"	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	71343994	12A2p6	cell line	sgMsh2	71343994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	100	0	0	NA	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon3:c.T105C:p.T35T	2qC2	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	73435092	12A2p6	cell line	sgMsh2	73435092	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	71	0	0	NA	exonic	Wipf1	frameshift deletion	"Wipf1:NM_001289722:exon6:c.1166delC:p.P389Lfs*164,Wipf1:NM_001289723:exon6:c.1166delC:p.P389Lfs*164,Wipf1:NM_153138:exon6:c.1166delC:p.P389Lfs*164"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
SSC_p20	chr2	73580275	12A2p6	cell line	sgMsh2	73580275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	99	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon1:c.A13C:p.T5P	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	40	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9990902	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	76356153	12A2p6	cell line	sgMsh2	76356153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	95	0	0	NA	exonic	Cyct	synonymous SNV	Cyct:NM_009989:exon3:c.T96C:p.N32N	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	76552147	12A2p6	cell line	sgMsh2	76552147	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.107	59	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon9:c.G687A:p.S229S,Osbpl6:NM_145525:exon9:c.G687A:p.S229S,Osbpl6:NM_001290733:exon10:c.G687A:p.S229S"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.630955991	2	0.6256177	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	76555915	12A2p6	cell line	sgMsh2	76555915	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	153	0	0	NA	exonic	Osbpl6	nonsynonymous SNV	"Osbpl6:NM_145525:exon11:c.A920C:p.K307T,Osbpl6:NM_001290733:exon12:c.A920C:p.K307T"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	AAA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
SSC_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	111	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	76630499	12A2p6	cell line	sgMsh2	76630499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	126	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon8:c.A854G:p.H285R	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	76736844	12A2p6	cell line	sgMsh2	76736844	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	119	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon154:c.58723delG:p.A19575Lfs*2,Ttn:NM_011652:exon275:c.78466delG:p.A26156Lfs*2,Ttn:NM_001385708:exon312:c.84298delG:p.A28100Lfs*2"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC_p20	chr2	76791109	12A2p6	cell line	sgMsh2	76791109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	216	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon90:c.A22005G:p.P7335P,Ttn:NM_011652:exon211:c.A41748G:p.P13916P,Ttn:NM_001385708:exon248:c.A47580G:p.P15860P"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	76849122	12A2p6	cell line	sgMsh2	76849122	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	93	0	0	NA	exonic	Ttn	nonsynonymous SNV	Ttn:NM_011652:exon137:c.A29681G:p.N9894S	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	76880202	12A2p6	cell line	sgMsh2	76880202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	207	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon89:c.A22792G:p.T7598A,Ttn:NM_001385708:exon91:c.A25849G:p.T8617A"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	76894853	12A2p6	cell line	sgMsh2	76894853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	144	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon65:c.T16050C:p.D5350D,Ttn:NM_001385708:exon67:c.T19071C:p.D6357D"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	76896383	12A2p6	cell line	sgMsh2	76896383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	167	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon61:c.T15091C:p.Y5031H,Ttn:NM_001385708:exon63:c.T18112C:p.Y6038H"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.08E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	107	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	78301701	12A2p6	cell line	sgMsh2	78301701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	123	0	0	NA	exonic	Gm14461	nonsynonymous SNV	Gm14461:NM_177843:exon6:c.T10C:p.W4R	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	206	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.09E-09	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	79644718	12A2p6	cell line	sgMsh2	79644718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	85	0	0	NA	exonic	Itprid2	synonymous SNV	Itprid2:NM_080558:exon8:c.T1020C:p.P340P	2qC3	chr2-33014884-80658668	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	114	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	82256428	12A2p6	cell line	sgMsh2	82256428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	235	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon4:c.C600T:p.S200S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.83144668	1	0.9998622	GCC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	83007483	12A2p6	cell line	sgMsh2	83007483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	190	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon22:c.A20785G:p.I6929V	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.44E-09	TAT	nonsynonymous	CTAT	8	CTATCTAT	NA
SSC_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	268	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	83915312	12A2p6	cell line	sgMsh2	83915312	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	383	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1781T:p.N594I	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	83915943	12A2p6	cell line	sgMsh2	83915943	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	206	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1150G:p.I384V	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	5.87E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	84769834	12A2p6	cell line	sgMsh2	84769834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	281	0	0	NA	exonic	Serping1	synonymous SNV	Serping1:NM_009776:exon6:c.C981T:p.P327P	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.642749561	2	0.9999972	TGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	84982608	12A2p6	cell line	sgMsh2	84982608	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	75	0	0	NA	exonic	Prg2	nonsynonymous SNV	Prg2:NM_008920:exon4:c.A389G:p.Y130C	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	85035189	12A2p6	cell line	sgMsh2	85035189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	163	0	0	NA	exonic	P2rx3	synonymous SNV	P2rx3:NM_145526:exon1:c.C111T:p.Y37Y	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.01E-09	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	85438304	12A2p6	cell line	sgMsh2	85438304	G	A	SNV	Mutect2;Vardict	2	0.017	416	0	0	NA	exonic	Olfr995	synonymous SNV	Olfr995:NM_146434:exon1:c.C853T:p.L285L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.100245344	3	1	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	85579489	12A2p6	cell line	sgMsh2	85579489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	518	0	0	NA	exonic	Olfr996	synonymous SNV	Olfr996:NM_146437:exon1:c.T249C:p.C83C	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	85608517	12A2p6	cell line	sgMsh2	85608517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	506	0	0	NA	exonic	Olfr1000	nonsynonymous SNV	Olfr1000:NM_001011695:exon1:c.T392C:p.L131P	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	85840993	12A2p6	cell line	sgMsh2	85840993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	203	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A797G:p.Y266C	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.12E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	85951228	12A2p6	cell line	sgMsh2	85951228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	310	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T164C:p.L55P	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86160070	12A2p6	cell line	sgMsh2	86160070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	313	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A299G:p.Q100R	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86198521	12A2p6	cell line	sgMsh2	86198521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	450	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.T230C:p.I77T	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86347216	12A2p6	cell line	sgMsh2	86347216	C	T	SNV	Mutect2;Vardict	2	0.023	309	0	0	NA	exonic	Olfr1055	synonymous SNV	"Olfr1055:NM_001310551:exon1:c.G549A:p.P183P,Olfr1055:NM_147021:exon1:c.G549A:p.P183P"	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.135626054	3	1	ACG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	86347406	12A2p6	cell line	sgMsh2	86347406	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	273	0	0	NA	exonic	Olfr1055	nonsynonymous SNV	"Olfr1055:NM_001310551:exon1:c.A359G:p.Y120C,Olfr1055:NM_147021:exon1:c.A359G:p.Y120C"	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9982795	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	416	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.996556658	1	1	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	86445613	12A2p6	cell line	sgMsh2	86445613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	367	0	0	NA	exonic	Olfr1065	nonsynonymous SNV	Olfr1065:NM_146408:exon1:c.A368G:p.Y123C	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	1	0.724931	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86538215	12A2p6	cell line	sgMsh2	86538215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	251	0	0	NA	exonic	Olfr1079	synonymous SNV	Olfr1079:NM_146407:exon1:c.T699C:p.A233A	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	1	1.01E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	86554009	12A2p6	cell line	sgMsh2	86554009	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	282	0	0	NA	exonic	Olfr1080	synonymous SNV	Olfr1080:NM_146409:exon2:c.A114C:p.S38S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	1.06E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	86594176	12A2p6	cell line	sgMsh2	86594176	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	462	0	0	NA	exonic	Olfr1082	synonymous SNV	Olfr1082:NM_207674:exon2:c.C651A:p.S217S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	1	2.50E-09	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	86785904	12A2p6	cell line	sgMsh2	86785904	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	350	0	0	NA	exonic	Olfr1093	nonsynonymous SNV	"Olfr1093:NM_001368206:exon2:c.T173G:p.V58G,Olfr1093:NM_146366:exon3:c.T173G:p.V58G"	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9993096	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86891111	12A2p6	cell line	sgMsh2	86891111	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	243	0	0	NA	exonic	Olfr1097	nonsynonymous SNV	Olfr1097:NM_146843:exon2:c.G63T:p.K21N	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.648646346	2	0.9999548	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	86978375	12A2p6	cell line	sgMsh2	86978375	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	279	0	0	NA	exonic	Olfr1100	nonsynonymous SNV	Olfr1100:NM_146594:exon1:c.C420A:p.F140L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87002441	12A2p6	cell line	sgMsh2	87002441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	360	0	0	NA	exonic	Olfr1102	synonymous SNV	Olfr1102:NM_207154:exon1:c.T471C:p.I157I	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	87071227	12A2p6	cell line	sgMsh2	87071227	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	181	0	0	NA	exonic	Olfr1107	nonsynonymous SNV	Olfr1107:NM_146844:exon1:c.G906T:p.K302N	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	1	0.9967627	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87093226	12A2p6	cell line	sgMsh2	87093226	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	309	0	0	NA	exonic	Olfr1109	nonsynonymous SNV	Olfr1109:NM_146766:exon1:c.C170T:p.T57I	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.159213194	3	1	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	206	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9999998	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	87371819	12A2p6	cell line	sgMsh2	87371819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	304	0	0	NA	exonic	Olfr1121	nonsynonymous SNV	Olfr1121:NM_146348:exon1:c.A286G:p.R96G	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.754788475	1	0.6383577	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87435310	12A2p6	cell line	sgMsh2	87435310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	202	0	0	NA	exonic	Olfr1124	synonymous SNV	Olfr1124:NM_147028:exon1:c.T822C:p.G274G	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	1	0.99996	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	87457486	12A2p6	cell line	sgMsh2	87457486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	474	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.T320C:p.M107T	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	2	7.33E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87629226	12A2p6	cell line	sgMsh2	87629226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	371	0	0	NA	exonic	Olfr1131	synonymous SNV	Olfr1131:NM_146658:exon1:c.A762G:p.L254L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	1.40E-09	TAC	synonymous	ACTCT	10	ACTCTACTCT	NA
SSC_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	342	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.996556658	1	1	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	87635713	12A2p6	cell line	sgMsh2	87635713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	182	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.A33G:p.E11E	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.625059206	2	0.9998072	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	87645748	12A2p6	cell line	sgMsh2	87645748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	435	0	0	NA	exonic	Olfr1133	nonsynonymous SNV	Olfr1133:NM_146351:exon1:c.T374C:p.V125A	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.163	487	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	NA	NA	CAT	frameshift	NA	NA	NA	1
SSC_p20	chr2	87783116	12A2p6	cell line	sgMsh2	87783116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	318	0	0	NA	exonic	Olfr152	nonsynonymous SNV	Olfr152:NM_146646:exon1:c.C581T:p.T194M	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	1.51E-09	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	440	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	288	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88034611	12A2p6	cell line	sgMsh2	88034611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	193	0	0	NA	exonic	Olfr73	nonsynonymous SNV	Olfr73:NM_054090:exon1:c.A527G:p.N176S	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9999982	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88149893	12A2p6	cell line	sgMsh2	88149893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	451	0	0	NA	exonic	Olfr1167	nonsynonymous SNV	Olfr1167:NM_146294:exon1:c.T125C:p.M42T	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88185500	12A2p6	cell line	sgMsh2	88185500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	500	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.A622G:p.S208G	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.442258872	2	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	549	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	1.00E-09	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88224417	12A2p6	cell line	sgMsh2	88224417	-	A	Insertion	Mutect2;Vardict	2	0.044	481	0	0	NA	exonic	Olfr1170	frameshift insertion	Olfr1170:NM_146532:exon1:c.613dupT:p.S205Ffs*3	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.259458538	NA	NA	AGA	frameshift	NA	NA	NA	1
SSC_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	387	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	88391284	12A2p6	cell line	sgMsh2	88391284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	228	0	0	NA	exonic	Olfr1178	synonymous SNV	Olfr1178:NM_001011868:exon1:c.C36T:p.L12L	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9997085	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	228	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.7842724	1	0.9836284	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
SSC_p20	chr2	88423997	12A2p6	cell line	sgMsh2	88423997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	298	0	0	NA	exonic	Olfr1181	synonymous SNV	Olfr1181:NM_001011816:exon1:c.A27G:p.E9E	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.766582045	1	0.8936938	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.12	184	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	2	0.8960452	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88591937	12A2p6	cell line	sgMsh2	88591937	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	280	0	0	NA	exonic	Olfr1189	synonymous SNV	Olfr1189:NM_146772:exon1:c.G132T:p.V44V	2qD	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	88767458	12A2p6	cell line	sgMsh2	88767458	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	405	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.A856T:p.T286S	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	1.21E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88794555	12A2p6	cell line	sgMsh2	88794555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	388	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.T172C:p.Y58H	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	2.24E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88852682	12A2p6	cell line	sgMsh2	88852682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	475	0	0	NA	exonic	Olfr1204	nonsynonymous SNV	Olfr1204:NM_146463:exon1:c.T731C:p.V244A	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	1	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88852771	12A2p6	cell line	sgMsh2	88852771	A	G	SNV	Mutect2;Vardict	2	0.015	420	0	0	NA	exonic	Olfr1204	nonsynonymous SNV	Olfr1204:NM_146463:exon1:c.A820G:p.T274A	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.088451774	3	1	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	88896946	12A2p6	cell line	sgMsh2	88896946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	298	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.T650C:p.I217T	2qE1	chr2-80837583-88897861	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	1	1.01E-09	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
SSC_p20	chr2	88909930	12A2p6	cell line	sgMsh2	88909930	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	466	0	0	NA	exonic	Olfr1209	synonymous SNV	Olfr1209:NM_146461:exon1:c.T462G:p.S154S	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.972969519	1	1	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	89013584	12A2p6	cell line	sgMsh2	89013584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	630	0	0	NA	exonic	Olfr1216	nonsynonymous SNV	Olfr1216:NM_146893:exon1:c.T479C:p.I160T	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	89023344	12A2p6	cell line	sgMsh2	89023344	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	614	0	0	NA	exonic	Olfr1217	nonsynonymous SNV	Olfr1217:NM_146901:exon1:c.A658G:p.I220V	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	1	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	89125280	12A2p6	cell line	sgMsh2	89125280	T	A	SNV	Mutect2;Vardict	2	0.014	595	0	0	NA	exonic	Olfr1222	synonymous SNV	Olfr1222:NM_001011860:exon1:c.A450T:p.G150G	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.082554989	3	1	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	89296493	12A2p6	cell line	sgMsh2	89296493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.C776A:p.P259H	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.22E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	89296783	12A2p6	cell line	sgMsh2	89296783	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	230	0	0	NA	exonic	Olfr1230	stopgain	Olfr1230:NM_146789:exon1:c.T486A:p.Y162X	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	231	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9999955	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	89325960	12A2p6	cell line	sgMsh2	89325960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	152	0	0	NA	exonic	Olfr1232	synonymous SNV	Olfr1232:NM_146323:exon1:c.C219A:p.S73S	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.766582045	1	0.9318559	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	89340100	12A2p6	cell line	sgMsh2	89340100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	279	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.T201C:p.Y67Y	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	1	1.00E-09	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	89362725	12A2p6	cell line	sgMsh2	89362725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	210	0	0	NA	exonic	Olfr1234	synonymous SNV	Olfr1234:NM_146973:exon1:c.T703C:p.L235L	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.996556658	1	1.09E-09	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	89977882	12A2p6	cell line	sgMsh2	89977882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	exonic	Olfr1260	nonsynonymous SNV	Olfr1260:NM_146981:exon1:c.C103T:p.L35F	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	90037444	12A2p6	cell line	sgMsh2	90037444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	633	0	0	NA	exonic	Olfr1265	nonsynonymous SNV	Olfr1265:NM_146343:exon1:c.A524G:p.Y175C	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	1	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	90052240	12A2p6	cell line	sgMsh2	90052240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	162	0	0	NA	exonic	Olfr140	nonsynonymous SNV	Olfr140:NM_020515:exon1:c.T83C:p.L28P	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	0.9999988	AAG	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr2	90149288	12A2p6	cell line	sgMsh2	90149288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	515	0	0	NA	exonic	Olfr1270	synonymous SNV	Olfr1270:NM_146985:exon1:c.C717A:p.A239A	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	90448145	12A2p6	cell line	sgMsh2	90448145	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.151	44	0	0	NA	exonic	Ptprj	nonsynonymous SNV	"Ptprj:NM_001135657:exon18:c.T2903C:p.L968P,Ptprj:NM_008982:exon18:c.T2846C:p.L949P"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9951168	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	90459713	12A2p6	cell line	sgMsh2	90459713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	79	0	0	NA	exonic	Ptprj	synonymous SNV	"Ptprj:NM_001135657:exon9:c.G1641A:p.R547R,Ptprj:NM_008982:exon9:c.G1584A:p.R528R"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.672233486	2	8.31E-09	GCC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	90721339	12A2p6	cell line	sgMsh2	90721339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	130	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon29:c.T3337C:p.S1113P	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.9998701	CTC	nonsynonymous	CAGC	9	CAGCCAGCC	NA
SSC_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	259	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91190884	12A2p6	cell line	sgMsh2	91190884	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	150	0	0	NA	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon5:c.A557C:p.Q186P,Nr1h3:NM_001355279:exon5:c.A557C:p.Q186P,Nr1h3:NM_013839:exon5:c.A557C:p.Q186P"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.972969519	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91212313	12A2p6	cell line	sgMsh2	91212313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	284	0	0	NA	exonic	Ddb2	nonsynonymous SNV	"Ddb2:NM_001362705:exon5:c.A634G:p.N212D,Ddb2:NM_028119:exon9:c.A1201G:p.N401D"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	2.74E-09	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91274813	12A2p6	cell line	sgMsh2	91274813	A	G	SNV	Mutect2;Vardict	2	0.025	216	0	0	NA	exonic	Arfgap2	synonymous SNV	"Arfgap2:NM_023854:exon13:c.A1221G:p.E407E,Arfgap2:NM_001166024:exon14:c.A1263G:p.E421E"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.147419624	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	192	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.855033819	1	0.9999435	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91480474	12A2p6	cell line	sgMsh2	91480474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	90	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon14:c.A1859G:p.H620R	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.99877	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91498361	12A2p6	cell line	sgMsh2	91498361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	259	0	0	NA	exonic	Lrp4	synonymous SNV	Lrp4:NM_172668:exon31:c.T4605C:p.H1535H	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ATC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	91562974	12A2p6	cell line	sgMsh2	91562974	A	G	SNV	Mutect2;Vardict	2	0.021	257	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon10:c.A1199G:p.D400G,Ckap5:NM_001165989:exon11:c.A1199G:p.D400G"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.123832484	3	1	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	91568226	12A2p6	cell line	sgMsh2	91568226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	117	0	0	NA	exonic	Ckap5	synonymous SNV	"Ckap5:NM_029437:exon13:c.A1740G:p.K580K,Ckap5:NM_001165989:exon14:c.A1740G:p.K580K"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	91572397	12A2p6	cell line	sgMsh2	91572397	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	161	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon16:c.A2018C:p.N673T,Ckap5:NM_001165989:exon17:c.A2018C:p.N673T"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	8.29E-09	AAT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr2	93813690	12A2p6	cell line	sgMsh2	93813690	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.171	279	0	0	NA	exonic	Ext2	frameshift insertion	"Ext2:NM_001355076:exon2:c.244dupG:p.D82Gfs*4,Ext2:NM_010163:exon2:c.244dupG:p.D82Gfs*3,Ext2:NM_001355075:exon3:c.289dupG:p.D97Gfs*3"	2qE1	chr2-88909196-94430128	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATC	frameshift	C	5	CCCCC	1
SSC_p20	chr2	97630410	12A2p6	cell line	sgMsh2	97630410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	121	0	0	NA	exonic	Lrrc4c	synonymous SNV	"Lrrc4c:NM_001289744:exon2:c.G1380A:p.E460E,Lrrc4c:NM_178725:exon3:c.G1380A:p.E460E,Lrrc4c:NM_001363049:exon4:c.G1380A:p.E460E,Lrrc4c:NM_001289743:exon7:c.G1380A:p.E460E,Lrrc4c:NM_001289742:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363048:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363047:exon9:c.G1380A:p.E460E"	2qE1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	AGA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	101696760	12A2p6	cell line	sgMsh2	101696760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.G854A:p.R285H,Traf6:NM_009424:exon8:c.G854A:p.R285H"	2qE2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.22E-08	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	323	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	104685452	12A2p6	cell line	sgMsh2	104685452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	170	0	0	NA	exonic	Tcp11l1	synonymous SNV	Tcp11l1:NM_177190:exon8:c.T1065C:p.S355S	2qE2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	104786979	12A2p6	cell line	sgMsh2	104786979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	207	0	0	NA	exonic	Qser1	nonsynonymous SNV	Qser1:NM_001123327:exon3:c.T3217C:p.Y1073H	2qE2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	TAC	nonsynonymous	TACA	8	TACATACA	NA
SSC_p20	chr2	105387932	12A2p6	cell line	sgMsh2	105387932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	137	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon6:c.A965G:p.H322R	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATG	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr2	106372356	12A2p6	cell line	sgMsh2	106372356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	77	0	0	NA	exonic	Dcdc5	nonsynonymous SNV	Dcdc5:NM_177844:exon18:c.A1666G:p.R556G	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	109723936	12A2p6	cell line	sgMsh2	109723936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	115	0	0	NA	exonic	Bdnf	synonymous SNV	"Bdnf:NM_001285422:exon1:c.A534G:p.Q178Q,Bdnf:NM_001048139:exon2:c.A534G:p.Q178Q,Bdnf:NM_001048141:exon2:c.A534G:p.Q178Q,Bdnf:NM_001048142:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285416:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285417:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285418:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285419:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285420:exon2:c.A534G:p.Q178Q,Bdnf:NM_001285421:exon2:c.A534G:p.Q178Q,Bdnf:NM_007540:exon2:c.A558G:p.Q186Q,Bdnf:NM_001316310:exon3:c.A534G:p.Q178Q"	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9998099	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	110362795	12A2p6	cell line	sgMsh2	110362795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	83	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A1G:p.M1V	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111091876	12A2p6	cell line	sgMsh2	111091876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	117	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon58:c.T4194C:p.D1398D	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	111139008	12A2p6	cell line	sgMsh2	111139008	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	131	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon35:c.T2632A:p.L878I	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111270074	12A2p6	cell line	sgMsh2	111270074	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	158	0	0	NA	exonic	Olfr1277	nonsynonymous SNV	Olfr1277:NM_146396:exon1:c.A292C:p.M98L	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.223	617	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	157	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.18E-08	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	111621333	12A2p6	cell line	sgMsh2	111621333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	250	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T740C:p.V247A	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	8.11E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111780515	12A2p6	cell line	sgMsh2	111780515	A	G	SNV	Mutect2;Vardict	2	0.014	458	0	0	NA	exonic	Olfr1302	nonsynonymous SNV	Olfr1302:NM_146889:exon1:c.A203G:p.N68S	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.082554989	3	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	332	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	112042552	12A2p6	cell line	sgMsh2	112042552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	418	0	0	NA	exonic	Olfr1312	nonsynonymous SNV	Olfr1312:NM_146362:exon1:c.T479C:p.V160A	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	112142466	12A2p6	cell line	sgMsh2	112142466	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	394	0	0	NA	exonic	Olfr1317	nonsynonymous SNV	Olfr1317:NM_146448:exon1:c.A520C:p.M174L	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	112156184	12A2p6	cell line	sgMsh2	112156184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	307	0	0	NA	exonic	Olfr1318	nonsynonymous SNV	Olfr1318:NM_001011802:exon1:c.A232G:p.T78A	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	112825831	12A2p6	cell line	sgMsh2	112825831	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	135	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon38:c.A5819T:p.E1940V	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	96	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.999996	AAC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr2	113289743	12A2p6	cell line	sgMsh2	113289743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	98	0	0	NA	exonic	Tmco5b	synonymous SNV	Tmco5b:NM_029232:exon6:c.A363G:p.K121K	2qE4	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999967	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	113596373	12A2p6	cell line	sgMsh2	113596373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	221	0	0	NA	exonic	Fmn1	nonsynonymous SNV	"Fmn1:NM_001285458:exon11:c.A3434G:p.Y1145C,Fmn1:NM_001285459:exon11:c.A3050G:p.Y1017C,Fmn1:NM_010230:exon13:c.A3728G:p.Y1243C"	2qE4	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.176903549	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	112	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	144	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	118205158	12A2p6	cell line	sgMsh2	118205158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	268	0	0	NA	exonic	Fsip1	nonsynonymous SNV	Fsip1:NM_027759:exon11:c.T1235C:p.M412T	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	118791987	12A2p6	cell line	sgMsh2	118791987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	113	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3199C:p.C1067R	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.2047	127	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr2	119246364	12A2p6	cell line	sgMsh2	119246364	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	67	0	0	NA	exonic	Spint1	nonsynonymous SNV	Spint1:NM_016907:exon7:c.T928G:p.S310A	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	119330981	12A2p6	cell line	sgMsh2	119330981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon8:c.A1043G:p.H348R	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	32	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9980255	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	119778184	12A2p6	cell line	sgMsh2	119778184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	50	0	0	NA	exonic	Rpap1	synonymous SNV	"Rpap1:NM_001163701:exon6:c.A696G:p.V232V,Rpap1:NM_177294:exon7:c.A696G:p.V232V"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	113	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
SSC_p20	chr2	119921746	12A2p6	cell line	sgMsh2	119921746	T	-	Deletion	Mutect2;Strelka2	2	0.288	153	0	0	NA	exonic	Mga	frameshift deletion	"Mga:NM_001164274:exon7:c.2320delT:p.P775Lfs*38,Mga:NM_013720:exon7:c.2320delT:p.P775Lfs*38"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr2	119921751	12A2p6	cell line	sgMsh2	119921751	T	C	SNV	Mutect2;Strelka2	2	0.293	157	0	0	NA	exonic	Mga	synonymous SNV	"Mga:NM_001164274:exon7:c.T2325C:p.P775P,Mga:NM_013720:exon7:c.T2325C:p.P775P"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-08	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	120021181	12A2p6	cell line	sgMsh2	120021181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	80	0	0	NA	exonic	Mapkbp1	nonsynonymous SNV	"Mapkbp1:NM_011941:exon22:c.T2585C:p.V862A,Mapkbp1:NM_001355293:exon23:c.T2603C:p.V868A"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120030127	12A2p6	cell line	sgMsh2	120030127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	244	0	0	NA	exonic	Jmjd7	stopgain	Jmjd7:NM_001114637:exon2:c.G134A:p.W45X	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120191292	12A2p6	cell line	sgMsh2	120191292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	75	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.A334G:p.T112A,Pla2g4e:NM_001363090:exon4:c.A67G:p.T23A"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120320682	12A2p6	cell line	sgMsh2	120320682	A	-	Deletion	Strelka2;Vardict	2	0.1739	46	0	0	NA	exonic	Vps39	frameshift deletion	"Vps39:NM_001363053:exon22:c.2361delT:p.K788Rfs*20,Vps39:NM_001363054:exon22:c.2058delT:p.K687Rfs*20,Vps39:NM_178851:exon23:c.2430delT:p.K811Rfs*20,Vps39:NM_147153:exon24:c.2463delT:p.K822Rfs*20"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr2	120406277	12A2p6	cell line	sgMsh2	120406277	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	66	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon2:c.A41T:p.E14V	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999268	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120430999	12A2p6	cell line	sgMsh2	120430999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	145	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon10:c.A959C:p.D320A	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.54E-08	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120524035	12A2p6	cell line	sgMsh2	120524035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	173	0	0	NA	exonic	Zfp106	synonymous SNV	Zfp106:NM_011743:exon11:c.A4323G:p.V1441V	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.28E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	120594947	12A2p6	cell line	sgMsh2	120594947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	154	0	0	NA	exonic	Snap23	nonsynonymous SNV	"Snap23:NM_001177793:exon6:c.A413G:p.Y138C,Snap23:NM_009222:exon6:c.A413G:p.Y138C,Snap23:NM_001177792:exon7:c.A446G:p.Y149C"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.459949227	2	0.9999946	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999913	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120748632	12A2p6	cell line	sgMsh2	120748632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	173	0	0	NA	exonic	Ttbk2	nonsynonymous SNV	"Ttbk2:NM_001024857:exon13:c.G1801T:p.G601C,Ttbk2:NM_001024856:exon14:c.G1801T:p.G601C,Ttbk2:NM_080788:exon14:c.G2008T:p.G670C"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.28E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120748973	12A2p6	cell line	sgMsh2	120748973	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	90	0	0	NA	exonic	Ttbk2	frameshift deletion	"Ttbk2:NM_001024857:exon13:c.1460delC:p.P487Lfs*11,Ttbk2:NM_001024856:exon14:c.1460delC:p.P487Lfs*11,Ttbk2:NM_080788:exon14:c.1667delC:p.P556Lfs*11"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr2	120977781	12A2p6	cell line	sgMsh2	120977781	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	104	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon2:c.T263G:p.I88S	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	120986661	12A2p6	cell line	sgMsh2	120986661	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	154	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon6:c.A697G:p.T233A	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	80	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	121305990	12A2p6	cell line	sgMsh2	121305990	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.257	75	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon4:c.A6572G:p.Y2191C,Map1a:NM_032393:exon5:c.A7286G:p.Y2429C"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	121307586	12A2p6	cell line	sgMsh2	121307586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	114	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon5:c.A8026G:p.S2676G,Map1a:NM_032393:exon6:c.A8740G:p.S2914G"	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	121432334	12A2p6	cell line	sgMsh2	121432334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	149	0	0	NA	exonic	Pdia3	synonymous SNV	Pdia3:NM_007952:exon7:c.A780G:p.L260L	2qE5	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	125200598	12A2p6	cell line	sgMsh2	125200598	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	55	0	0	NA	exonic	Slc12a1	frameshift deletion	"Slc12a1:NM_001079690:exon18:c.2173delA:p.K726Nfs*5,Slc12a1:NM_183354:exon18:c.2173delA:p.K726Nfs*5"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	104	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	126594161	12A2p6	cell line	sgMsh2	126594161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	137	0	0	NA	exonic	Hdc	nonsynonymous SNV	Hdc:NM_008230:exon12:c.T1789C:p.S597P	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	126748220	12A2p6	cell line	sgMsh2	126748220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	203	0	0	NA	exonic	Usp8	nonsynonymous SNV	"Usp8:NM_001252580:exon13:c.A1925G:p.Y642C,Usp8:NM_019729:exon13:c.A1892G:p.Y631C"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.12E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	129	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	127245750	12A2p6	cell line	sgMsh2	127245750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	151	0	0	NA	exonic	Ciao1	nonsynonymous SNV	Ciao1:NM_025296:exon5:c.C664T:p.R222C	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.02E-08	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	114	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	127435035	12A2p6	cell line	sgMsh2	127435035	T	C	SNV	Mutect2;Vardict	2	0.042	98	0	0	NA	exonic	Gpat2	nonsynonymous SNV	Gpat2:NM_001081089:exon19:c.T2075C:p.F692S	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.247664968	3	0.9988505	TTC	nonsynonymous	TCTTCC	15	TCTTCCTCTTCCTCT	NA
SSC_p20	chr2	127656060	12A2p6	cell line	sgMsh2	127656060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	62	0	0	NA	exonic	Mal	nonsynonymous SNV	"Mal:NM_001171187:exon1:c.T74C:p.L25S,Mal:NM_010762:exon1:c.T74C:p.L25S"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	128685915	12A2p6	cell line	sgMsh2	128685915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	164	0	0	NA	exonic	Anapc1	nonsynonymous SNV	Anapc1:NM_008569:exon2:c.A122G:p.Q41R	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	6.45E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	129199995	12A2p6	cell line	sgMsh2	129199995	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	123	0	0	NA	exonic	Slc20a1	nonsynonymous SNV	"Slc20a1:NM_001159593:exon2:c.T277A:p.L93M,Slc20a1:NM_015747:exon2:c.T277A:p.L93M"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	127	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	129285010	12A2p6	cell line	sgMsh2	129285010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	181	0	0	NA	exonic	Ckap2l	nonsynonymous SNV	Ckap2l:NM_181589:exon4:c.A1247C:p.D416A	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.05E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	129460444	12A2p6	cell line	sgMsh2	129460444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	202	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon5:c.A1227G:p.V409V,F830045P16Rik:NM_177653:exon5:c.A1227G:p.V409V"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.14E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.291	120	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	130047744	12A2p6	cell line	sgMsh2	130047744	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	32	0	0	NA	exonic	Tgm3	frameshift deletion	Tgm3:NM_009374:exon12:c.1857delC:p.L621Wfs*4	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr2	130101276	12A2p6	cell line	sgMsh2	130101276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	215	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.T753C:p.T251T	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	130405550	12A2p6	cell line	sgMsh2	130405550	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.247	44	0	0	NA	exonic	1700020A23Rik	frameshift insertion	"1700020A23Rik:NM_001163483:exon1:c.6dupC:p.W5Lfs*44,1700020A23Rik:NM_029375:exon2:c.6dupC:p.W5Lfs*44"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
SSC_p20	chr2	130539649	12A2p6	cell line	sgMsh2	130539649	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	71	0	0	NA	exonic	Ptpra	nonsynonymous SNV	"Ptpra:NM_001163688:exon11:c.A1029C:p.Q343H,Ptpra:NM_001355161:exon12:c.A1056C:p.Q352H,Ptpra:NM_008980:exon12:c.A1137C:p.Q379H"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	130616347	12A2p6	cell line	sgMsh2	130616347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	150	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.A187G:p.T63A,Fastkd5:NM_001377125:exon2:c.A187G:p.T63A,Fastkd5:NM_001146084:exon3:c.A187G:p.T63A,Fastkd5:NM_198176:exon3:c.A187G:p.T63A"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	130970141	12A2p6	cell line	sgMsh2	130970141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	69	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon12:c.A2005T:p.T669S	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999453	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	77	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999748	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	94	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999952	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	146	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	134988178	12A2p6	cell line	sgMsh2	134988178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	82	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon3:c.G232A:p.A78T,Plcb1:NM_019677:exon3:c.G232A:p.A78T"	2qF3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	136756134	12A2p6	cell line	sgMsh2	136756134	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	61	0	0	NA	exonic	Snap25	nonsynonymous SNV	"Snap25:NM_001291056:exon2:c.C5A:p.A2D,Snap25:NM_001355254:exon2:c.C5A:p.A2D,Snap25:NM_001355255:exon2:c.C5A:p.A2D,Snap25:NM_011428:exon2:c.C5A:p.A2D"	2qF3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.654543131	2	7.82E-07	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	137089324	12A2p6	cell line	sgMsh2	137089324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	74	0	0	NA	exonic	Jag1	synonymous SNV	Jag1:NM_013822:exon15:c.T1887C:p.N629N	2qF3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	144502992	12A2p6	cell line	sgMsh2	144502992	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	99	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon9:c.A844C:p.N282H,Dzank1:NM_001360362:exon9:c.A844C:p.N282H,Dzank1:NM_001360363:exon9:c.A844C:p.N282H,Dzank1:NM_172859:exon9:c.A844C:p.N282H"	2qG1	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	150625090	12A2p6	cell line	sgMsh2	150625090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	108	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.A1586G:p.H529R	2qG3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	151706653	12A2p6	cell line	sgMsh2	151706653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	69	0	0	NA	exonic	Tmem74b	nonsynonymous SNV	Tmem74b:NM_001160363:exon2:c.T299C:p.V100A	2qG3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	151706788	12A2p6	cell line	sgMsh2	151706788	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	78	0	0	NA	exonic	Tmem74b	nonsynonymous SNV	Tmem74b:NM_001160363:exon2:c.T434C:p.L145S	2qG3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.383291022	2	0.8935047	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	41	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-152274452	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9991742	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	152308332	12A2p6	cell line	sgMsh2	152308332	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	191	0	0	NA	exonic	Tbc1d20	nonsynonymous SNV	Tbc1d20:NM_024196:exon5:c.A524C:p.D175A	2qG3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	1.06E-08	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	152441250	12A2p6	cell line	sgMsh2	152441250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	214	0	0	NA	exonic	6820408C15Rik	nonsynonymous SNV	"6820408C15Rik:NM_001379452:exon6:c.T626C:p.L209P,6820408C15Rik:NM_001289738:exon10:c.T836C:p.L279P,6820408C15Rik:NM_177656:exon10:c.T833C:p.L278P"	2qG3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
SSC_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	132	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	153392875	12A2p6	cell line	sgMsh2	153392875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	144	0	0	NA	exonic	Asxl1	nonsynonymous SNV	Asxl1:NM_001039939:exon6:c.T506A:p.L169Q	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	153401476	12A2p6	cell line	sgMsh2	153401476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	0	0	NA	exonic	Asxl1	synonymous SNV	Asxl1:NM_001039939:exon12:c.T3948C:p.S1316S	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	154504560	12A2p6	cell line	sgMsh2	154504560	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	72	0	0	NA	exonic	Cbfa2t2	nonsynonymous SNV	"Cbfa2t2:NM_009823:exon3:c.T186A:p.N62K,Cbfa2t2:NM_172860:exon3:c.T186A:p.N62K"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	154625009	12A2p6	cell line	sgMsh2	154625009	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	42	0	0	NA	exonic	Zfp341	synonymous SNV	Zfp341:NM_199304:exon3:c.A297T:p.A99A	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9992505	CAC	synonymous	CAG	8	CAGCAGCA	NA
SSC_p20	chr2	155385359	12A2p6	cell line	sgMsh2	155385359	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	168	0	0	NA	exonic	Trp53inp2	nonsynonymous SNV	Trp53inp2:NM_178111:exon2:c.A19C:p.S7R	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	155437993	12A2p6	cell line	sgMsh2	155437993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	116	0	0	NA	exonic	Ncoa6	synonymous SNV	"Ncoa6:NM_001242558:exon2:c.T102C:p.D34D,Ncoa6:NM_019825:exon2:c.T102C:p.D34D"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CAT	synonymous	TCA	8	TCATCATC	NA
SSC_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.177	118	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	156264345	12A2p6	cell line	sgMsh2	156264345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	111	0	0	NA	exonic	Phf20	synonymous SNV	Phf20:NM_172674:exon5:c.T405G:p.A135A	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	CTT	synonymous	T	5	TTTTT	NA
SSC_p20	chr2	156312789	12A2p6	cell line	sgMsh2	156312789	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.261	67	0	0	NA	exonic	Cnbd2	nonsynonymous SNV	"Cnbd2:NM_001316755:exon1:c.C257T:p.P86L,Cnbd2:NM_027585:exon1:c.C257T:p.P86L"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	156525099	12A2p6	cell line	sgMsh2	156525099	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.221	89	0	0	NA	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291121:exon15:c.T1851C:p.H617H,Epb41l1:NM_001368802:exon15:c.T1884C:p.H628H,Epb41l1:NM_001368804:exon15:c.T1887C:p.H629H,Epb41l1:NM_013510:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291120:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368801:exon16:c.T1863C:p.H621H,Epb41l1:NM_001368803:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368800:exon18:c.T3918C:p.H1306H"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	157027427	12A2p6	cell line	sgMsh2	157027427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	23	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.T3287C:p.V1096A	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9952866	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	282	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	157177276	12A2p6	cell line	sgMsh2	157177276	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	287	0	0	NA	exonic	Rbl1	synonymous SNV	"Rbl1:NM_001139516:exon12:c.C1548T:p.P516P,Rbl1:NM_011249:exon12:c.C1548T:p.P516P"	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.454052442	2	1.68E-09	GGG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	103	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999998	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr2	158547781	12A2p6	cell line	sgMsh2	158547781	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	0	0	NA	exonic	Arhgap40	nonsynonymous SNV	Arhgap40:NM_001145015:exon13:c.A1864C:p.S622R	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	34	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9983731	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	160908277	12A2p6	cell line	sgMsh2	160908277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	81	0	0	NA	exonic	Emilin3	synonymous SNV	"Emilin3:NM_001291145:exon4:c.T1410C:p.S470S,Emilin3:NM_182840:exon4:c.T1551C:p.S517S"	2qH2	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	TAC	synonymous	GTG	8	GTGGTGGT	NA
SSC_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	171	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.77E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
SSC_p20	chr2	163568959	12A2p6	cell line	sgMsh2	163568959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	108	0	0	NA	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon9:c.A1202G:p.N401S,Hnf4a:NM_001312906:exon10:c.A1127G:p.N376S,Hnf4a:NM_001312907:exon10:c.A1127G:p.N376S"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	164759267	12A2p6	cell line	sgMsh2	164759267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	187	0	0	NA	exonic	Dnttip1	synonymous SNV	Dnttip1:NM_133763:exon8:c.C570A:p.S190S	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.59E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr2	164777838	12A2p6	cell line	sgMsh2	164777838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	188	0	0	NA	exonic	Tnnc2	synonymous SNV	Tnnc2:NM_009394:exon4:c.T207C:p.G69G	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.53E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	164795107	12A2p6	cell line	sgMsh2	164795107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	56	0	0	NA	exonic	Acot8	nonsynonymous SNV	"Acot8:NM_001362757:exon4:c.T476C:p.L159P,Acot8:NM_001362756:exon5:c.T722C:p.L241P,Acot8:NM_133240:exon5:c.T722C:p.L241P"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	166951271	12A2p6	cell line	sgMsh2	166951271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	221	0	0	NA	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon8:c.A925G:p.S309G,Stau1:NM_001109906:exon8:c.A943G:p.S315G,Stau1:NM_001291160:exon8:c.A925G:p.S309G,Stau1:NM_011490:exon8:c.A919G:p.S307G"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	213	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.05E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	17	0	0	NA	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9915948	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	168648698	12A2p6	cell line	sgMsh2	168648698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	79	0	0	NA	exonic	Atp9a	nonsynonymous SNV	"Atp9a:NM_001289445:exon21:c.T2159A:p.V720D,Atp9a:NM_001289446:exon21:c.T2153A:p.V718D,Atp9a:NM_001354977:exon21:c.T2141A:p.V714D,Atp9a:NM_001354978:exon21:c.T1919A:p.V640D,Atp9a:NM_015731:exon21:c.T2207A:p.V736D"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	168926540	12A2p6	cell line	sgMsh2	168926540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	173	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.T1151C:p.L384P	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.28E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	170119275	12A2p6	cell line	sgMsh2	170119275	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	213	0	0	NA	exonic	Zfp217	synonymous SNV	"Zfp217:NM_001033299:exon2:c.T1131C:p.S377S,Zfp217:NM_001159683:exon3:c.T1131C:p.S377S"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.05E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	114	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	172427692	12A2p6	cell line	sgMsh2	172427692	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	154	0	0	NA	exonic	Cass4	frameshift deletion	"Cass4:NM_001080820:exon5:c.1693delC:p.R565fs*0,Cass4:NM_001276422:exon5:c.1699delC:p.R567fs*0,Cass4:NM_001276423:exon5:c.1693delC:p.R565fs*0,Cass4:NM_001379465:exon5:c.1699delC:p.R567fs*0,Cass4:NM_001379466:exon5:c.1699delC:p.R567fs*0,Cass4:NM_001379467:exon5:c.1693delC:p.R565fs*0"	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	174093935	12A2p6	cell line	sgMsh2	174093935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	127	0	0	NA	exonic	Stx16	nonsynonymous SNV	"Stx16:NM_001102423:exon6:c.A646G:p.T216A,Stx16:NM_001102425:exon6:c.A595G:p.T199A,Stx16:NM_001102424:exon7:c.A607G:p.T203A,Stx16:NM_001363031:exon7:c.A310G:p.T104A,Stx16:NM_172675:exon7:c.A658G:p.T220A,Stx16:NM_001363030:exon8:c.A499G:p.T167A"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9985875	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	174285433	12A2p6	cell line	sgMsh2	174285433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	40	0	0	NA	exonic	Gnas	stoploss	"Gnas:NM_019690:exon2:c.T760C:p.X254Q,Gnas:NM_022000:exon2:c.T760C:p.X254Q"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9990902	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	56	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	205	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.10E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr2	178354939	12A2p6	cell line	sgMsh2	178354939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	133	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon34:c.C3470T:p.P1157L	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	178360306	12A2p6	cell line	sgMsh2	178360306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	22	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon30:c.A2872G:p.R958G	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.994809	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	178481665	12A2p6	cell line	sgMsh2	178481665	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	89	0	0	NA	exonic	Cdh26	nonsynonymous SNV	"Cdh26:NM_001291189:exon13:c.C1999A:p.L667M,Cdh26:NM_198656:exon14:c.C2056A:p.L686M"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999921	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	179797475	12A2p6	cell line	sgMsh2	179797475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	127	0	0	NA	exonic	Cdh4	synonymous SNV	"Cdh4:NM_001316723:exon4:c.C414T:p.A138A,Cdh4:NM_009867:exon4:c.C414T:p.A138A"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	CCC	synonymous	NA	NA	NA	NA
SSC_p20	chr2	179926228	12A2p6	cell line	sgMsh2	179926228	C	-	Deletion	Mutect2;Vardict	2	0.041	178	0	0	NA	exonic	Taf4	frameshift deletion	Taf4:NM_001081092:exon9:c.2345delG:p.G782Efs*18	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.241768183	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr2	180193764	12A2p6	cell line	sgMsh2	180193764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	43	0	0	NA	exonic	Lama5	frameshift deletion	Lama5:NM_001081171:exon30:c.3795delC:p.E1266Rfs*100	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr2	180257790	12A2p6	cell line	sgMsh2	180257790	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	258	0	0	NA	exonic	Rps21	nonsynonymous SNV	"Rps21:NM_001355516:exon2:c.C53T:p.S18F,Rps21:NM_001355517:exon3:c.C53T:p.S18F,Rps21:NM_001355518:exon3:c.C53T:p.S18F,Rps21:NM_001355520:exon3:c.C53T:p.S18F,Rps21:NM_001355521:exon3:c.C53T:p.S18F,Rps21:NM_025587:exon3:c.C53T:p.S18F"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	180472194	12A2p6	cell line	sgMsh2	180472194	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	199	0	0	NA	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon7:c.C1423A:p.L475I,Slco4a1:NM_148933:exon7:c.C1423A:p.L475I"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	95	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	ATC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	168	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-152275073-181807525	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.70E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr2	181864501	12A2p6	cell line	sgMsh2	181864501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	71	0	0	NA	exonic	Polr3k	nonsynonymous SNV	Polr3k:NM_025901:exon1:c.G43A:p.E15K	2qH4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GGA	nonsynonymous	GGA	8	GGAGGAGG	NA
SSC_p20	chr3	5243737	12A2p6	cell line	sgMsh2	5243737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	145	0	0	NA	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon2:c.T2022C:p.Y674Y,Zfhx4:NM_030708:exon2:c.T2022C:p.Y674Y"	3qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	156	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	7528672	12A2p6	cell line	sgMsh2	7528672	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	145	0	0	NA	exonic	Zc2hc1a	frameshift deletion	Zc2hc1a:NM_173181:exon7:c.689delC:p.Q232Rfs*30	3qA1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr3	14481277	12A2p6	cell line	sgMsh2	14481277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	200	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.A481G:p.K161E	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.17E-09	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	14537323	12A2p6	cell line	sgMsh2	14537323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	0	0	NA	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon4:c.A475G:p.T159A,Lrrcc1:NM_001163580:exon4:c.A475G:p.T159A,Lrrcc1:NM_028915:exon4:c.A475G:p.T159A"	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998249	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	15548787	12A2p6	cell line	sgMsh2	15548787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	433	0	0	NA	exonic	Sirpb1b	synonymous SNV	Sirpb1b:NM_001173460:exon2:c.G234T:p.S78S	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	ACG	synonymous	NA	NA	NA	NA
SSC_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	97	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	19144391	12A2p6	cell line	sgMsh2	19144391	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.292	112	0	0	NA	exonic	Armc1	frameshift deletion	"Armc1:NM_001357689:exon4:c.404delT:p.L135Wfs*10,Armc1:NM_028840:exon4:c.404delT:p.L135Wfs*10"	3qA2	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	99	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	ACA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	20028996	12A2p6	cell line	sgMsh2	20028996	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	177	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon4:c.T535C:p.L179L,Hps3:NM_001146324:exon4:c.T931C:p.L311L,Hps3:NM_080634:exon4:c.T931C:p.L311L"	3qA2	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.55E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr3	20315918	12A2p6	cell line	sgMsh2	20315918	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	192	0	0	NA	exonic	Agtr1b	nonsynonymous SNV	Agtr1b:NM_175086:exon2:c.A523C:p.T175P	3qA2	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.36E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	24171705	12A2p6	cell line	sgMsh2	24171705	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.455	57	0	0	NA	exonic	Naaladl2	frameshift deletion	Naaladl2:NM_001326288:exon9:c.1559delA:p.N520Mfs*20	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr3	27126892	12A2p6	cell line	sgMsh2	27126892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	0	0	NA	exonic	Ect2	synonymous SNV	"Ect2:NM_001177625:exon16:c.T1719C:p.A573A,Ect2:NM_001177626:exon16:c.T1719C:p.A573A,Ect2:NM_007900:exon17:c.T1812C:p.A604A"	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr3	28646635	12A2p6	cell line	sgMsh2	28646635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	108	0	0	NA	exonic	Tnik	synonymous SNV	"Tnik:NM_001163008:exon22:c.T2649C:p.S883S,Tnik:NM_001163007:exon23:c.T2736C:p.S912S,Tnik:NM_001163009:exon23:c.T2736C:p.S912S,Tnik:NM_026910:exon24:c.T2760C:p.S920S"	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	201	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.15E-09	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	31038519	12A2p6	cell line	sgMsh2	31038519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	165	0	0	NA	exonic	Prkci	synonymous SNV	Prkci:NM_008857:exon10:c.C949T:p.L317L	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr3	34049256	12A2p6	cell line	sgMsh2	34049256	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	153	0	0	NA	exonic	Fxr1	nonsynonymous SNV	"Fxr1:NM_001113188:exon8:c.G734T:p.R245M,Fxr1:NM_001113189:exon8:c.G734T:p.R245M,Fxr1:NM_008053:exon8:c.G734T:p.R245M"	3qA3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.68E-08	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	36035424	12A2p6	cell line	sgMsh2	36035424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	173	0	0	NA	exonic	Ccdc144b	frameshift deletion	Ccdc144b:NM_178418:exon4:c.350delA:p.N117Mfs*8	3qB	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	178	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.40E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	40964054	12A2p6	cell line	sgMsh2	40964054	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	115	0	0	NA	exonic	Larp1b	nonsynonymous SNV	"Larp1b:NM_001368221:exon3:c.G129T:p.E43D,Larp1b:NM_001040399:exon4:c.G129T:p.E43D,Larp1b:NM_001368222:exon4:c.G129T:p.E43D"	3qB	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	41727115	12A2p6	cell line	sgMsh2	41727115	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	219	0	0	NA	exonic	Sclt1	nonsynonymous SNV	Sclt1:NM_001081411:exon5:c.A268C:p.T90P	3qB	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	49745181	12A2p6	cell line	sgMsh2	49745181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.G2831A:p.S944N	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	49753375	12A2p6	cell line	sgMsh2	49753375	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	109	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon3:c.C2646A:p.S882R	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9997474	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	51266830	12A2p6	cell line	sgMsh2	51266830	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	92	0	0	NA	exonic	Elf2	frameshift deletion	"Elf2:NM_001291062:exon2:c.95delC:p.T32Rfs*19,Elf2:NM_001291063:exon2:c.95delC:p.T32Rfs*19,Elf2:NM_001291059:exon5:c.275delC:p.T92Rfs*19,Elf2:NM_023502:exon5:c.275delC:p.T92Rfs*19,Elf2:NM_001356358:exon6:c.38delC:p.T13Rfs*19"	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
SSC_p20	chr3	54696979	12A2p6	cell line	sgMsh2	54696979	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	102	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.C68A:p.P23H,Supt20:NM_001358017:exon3:c.C68A:p.P23H,Supt20:NM_019995:exon4:c.C68A:p.P23H"	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.595575281	2	0.9911112	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	136	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	55783196	12A2p6	cell line	sgMsh2	55783196	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	137	0	0	NA	exonic	Mab21l1	nonsynonymous SNV	Mab21l1:NM_010750:exon1:c.T203A:p.V68D	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	196	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.24E-09	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	127	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	84	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr3	59329502	12A2p6	cell line	sgMsh2	59329502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	126	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.C3257A:p.A1086D	3qD	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	62477287	12A2p6	cell line	sgMsh2	62477287	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	188	0	0	NA	exonic	Dhx36	nonsynonymous SNV	Dhx36:NM_028136:exon19:c.T2267G:p.F756C	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.53E-09	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	62602681	12A2p6	cell line	sgMsh2	62602681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	85	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon2:c.G1012A:p.G338R,Gpr149:NM_177346:exon2:c.G1012A:p.G338R"	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999406	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	64559783	12A2p6	cell line	sgMsh2	64559783	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	428	0	0	NA	exonic	Vmn2r6	nonsynonymous SNV	"Vmn2r6:NM_001104619:exon1:c.G27T:p.K9N,Vmn2r6:NM_001385213:exon2:c.G300T:p.K100N"	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	67433363	12A2p6	cell line	sgMsh2	67433363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	131	0	0	NA	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon3:c.T246C:p.G82G	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	131	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	154	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	82108956	12A2p6	cell line	sgMsh2	82108956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	133	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon5:c.A724G:p.S242G,Gucy1a1:NM_001356988:exon5:c.A724G:p.S242G,Gucy1a1:NM_021896:exon5:c.A724G:p.S242G"	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	82865447	12A2p6	cell line	sgMsh2	82865447	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	224	0	0	NA	exonic	Rbm46	nonsynonymous SNV	"Rbm46:NM_001146328:exon3:c.T377C:p.I126T,Rbm46:NM_001277170:exon3:c.T377C:p.I126T"	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	82903682	12A2p6	cell line	sgMsh2	82903682	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	102	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.C31A:p.L11I	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
SSC_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	216	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	84594306	12A2p6	cell line	sgMsh2	84594306	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	177	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.529delA:p.N178Mfs*4	3qF1	chr3-10012637-86781925	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr3	86787246	12A2p6	cell line	sgMsh2	86787246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	0	0	NA	exonic	Dclk2	nonsynonymous SNV	"Dclk2:NM_001195497:exon16:c.A2234G:p.D745G,Dclk2:NM_027539:exon16:c.A2237G:p.D746G,Dclk2:NM_001195496:exon17:c.A2282G:p.D761G,Dclk2:NM_001357460:exon17:c.A2285G:p.D762G"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9992505	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	86998695	12A2p6	cell line	sgMsh2	86998695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	178	0	0	NA	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379503:exon1:c.A176T:p.Y59F,Cd1d1:NM_007639:exon2:c.A272T:p.Y91F"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.40E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	87448357	12A2p6	cell line	sgMsh2	87448357	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	59	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon6:c.A1112C:p.E371A,Fcrl5:NM_183222:exon7:c.A1376C:p.E459A"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998558	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	87913145	12A2p6	cell line	sgMsh2	87913145	T	-	Deletion	Strelka2;Vardict	2	0.1987	156	0	0	NA	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr3	88449705	12A2p6	cell line	sgMsh2	88449705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	64	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.A958G:p.I320V,Sema4a:NM_001163490:exon9:c.A958G:p.I320V,Sema4a:NM_001163491:exon9:c.A958G:p.I320V,Sema4a:NM_013658:exon9:c.A958G:p.I320V"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	88484999	12A2p6	cell line	sgMsh2	88484999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	47	0	0	NA	exonic	Lmna	nonsynonymous SNV	"Lmna:NM_001002011:exon6:c.T1085G:p.L362R,Lmna:NM_001111102:exon6:c.T1085G:p.L362R,Lmna:NM_019390:exon6:c.T749G:p.L250R"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9995383	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	88651966	12A2p6	cell line	sgMsh2	88651966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	148	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A1177C:p.S393R	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	88652659	12A2p6	cell line	sgMsh2	88652659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	109	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A484G:p.T162A	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	88911810	12A2p6	cell line	sgMsh2	88911810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	0	0	NA	exonic	Msto1	nonsynonymous SNV	Msto1:NM_144898:exon7:c.T590C:p.L197P	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	88982717	12A2p6	cell line	sgMsh2	88982717	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	133	0	0	NA	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon2:c.A1902T:p.E634D	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAT	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr3	89188430	12A2p6	cell line	sgMsh2	89188430	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	53	0	0	NA	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon10:c.G818T:p.R273M,Fam189b:NM_001014995:exon11:c.G1790T:p.R597M,Fam189b:NM_001355760:exon11:c.G1472T:p.R491M"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999742	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	89208378	12A2p6	cell line	sgMsh2	89208378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	137	0	0	NA	exonic	Gba	synonymous SNV	"Gba:NM_001077411:exon10:c.A1392G:p.T464T,Gba:NM_008094:exon11:c.A1392G:p.T464T"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr3	89736059	12A2p6	cell line	sgMsh2	89736059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	140	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon2:c.T502G:p.L168V,Adar:NM_001146296:exon2:c.T1246G:p.L416V,Adar:NM_001357958:exon2:c.T1363G:p.L455V,Adar:NM_019655:exon2:c.T1246G:p.L416V"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	89761063	12A2p6	cell line	sgMsh2	89761063	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	97	0	0	NA	exonic	Chrnb2	nonsynonymous SNV	Chrnb2:NM_009602:exon5:c.G944T:p.S315I	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9980545	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	89781829	12A2p6	cell line	sgMsh2	89781829	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	69	0	0	NA	exonic	Ube2q1	frameshift deletion	Ube2q1:NM_027315:exon12:c.1229delA:p.N412Tfs*29	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr3	90079835	12A2p6	cell line	sgMsh2	90079835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	81	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.T104C:p.V35A,Tpm3:NM_001253740:exon1:c.T104C:p.V35A,Tpm3:NM_001271764:exon1:c.T104C:p.V35A,Tpm3:NM_001293749:exon1:c.T104C:p.V35A,Tpm3:NM_001357581:exon1:c.T104C:p.V35A"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	GTG	nonsynonymous	GGAG	8	GGAGGGAG	NA
SSC_p20	chr3	90185515	12A2p6	cell line	sgMsh2	90185515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon28:c.A3775C:p.S1259R	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	90254536	12A2p6	cell line	sgMsh2	90254536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	69	0	0	NA	exonic	Crtc2	nonsynonymous SNV	Crtc2:NM_028881:exon1:c.T131C:p.M44T	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	ATG	nonsynonymous	TGA	8	TGATGATG	NA
SSC_p20	chr3	90260345	12A2p6	cell line	sgMsh2	90260345	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Crtc2	synonymous SNV	"Crtc2:NM_001357152:exon6:c.C438A:p.G146G,Crtc2:NM_028881:exon10:c.C975A:p.G325G"	3qF1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr3	94403454	12A2p6	cell line	sgMsh2	94403454	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.059	162	0	0	NA	exonic	Lingo4	frameshift deletion	"Lingo4:NM_001368653:exon2:c.1623delC:p.F543Sfs*4,Lingo4:NM_177250:exon2:c.1698delC:p.F568Sfs*4"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.347910313	NA	NA	TCC	frameshift	NA	NA	NA	-1
SSC_p20	chr3	94779986	12A2p6	cell line	sgMsh2	94779986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	0	0	NA	exonic	Cgn	nonsynonymous SNV	"Cgn:NM_001037711:exon2:c.T2C:p.M1T,Cgn:NM_001293727:exon2:c.T2C:p.M1T"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	95008613	12A2p6	cell line	sgMsh2	95008613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	131	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon6:c.T2939C:p.V980A,Zfp687:NM_030074:exon6:c.T2939C:p.V980A"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	112	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	95248792	12A2p6	cell line	sgMsh2	95248792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	55	0	0	NA	exonic	Bnipl	nonsynonymous SNV	"Bnipl:NM_001168356:exon3:c.A118G:p.S40G,Bnipl:NM_134253:exon4:c.A214G:p.S72G"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997874	CTG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr3	95763832	12A2p6	cell line	sgMsh2	95763832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	40	0	0	NA	exonic	Rprd2	nonsynonymous SNV	"Rprd2:NM_001368179:exon10:c.A4126G:p.M1376V,Rprd2:NM_001081293:exon11:c.A4258G:p.M1420V,Rprd2:NM_001368178:exon11:c.A4204G:p.M1402V"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9990902	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	95853516	12A2p6	cell line	sgMsh2	95853516	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	84	0	0	NA	exonic	Prpf3	nonsynonymous SNV	"Prpf3:NM_001316751:exon2:c.T73C:p.F25L,Prpf3:NM_027541:exon2:c.T73C:p.F25L"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	127	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	96706991	12A2p6	cell line	sgMsh2	96706991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	66	0	0	NA	exonic	Nudt17	nonsynonymous SNV	"Nudt17:NM_001162925:exon6:c.A701G:p.D234G,Nudt17:NM_030094:exon6:c.A650G:p.D217G"	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999268	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	97562644	12A2p6	cell line	sgMsh2	97562644	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	283	0	0	NA	exonic	Chd1l	frameshift deletion	Chd1l:NM_026539:exon22:c.2565delT:p.F855Lfs*66	3qF2.1	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr3	98104463	12A2p6	cell line	sgMsh2	98104463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	132	0	0	NA	exonic	Notch2	nonsynonymous SNV	Notch2:NM_010928:exon11:c.A1796G:p.Y599C	3qF2.2	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	98126210	12A2p6	cell line	sgMsh2	98126210	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	199	0	0	NA	exonic	Notch2	synonymous SNV	Notch2:NM_010928:exon22:c.C3621T:p.N1207N	3qF2.2	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-09	ACC	synonymous	NA	NA	NA	NA
SSC_p20	chr3	98302625	12A2p6	cell line	sgMsh2	98302625	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	113	0	0	NA	exonic	Hmgcs2	frameshift deletion	Hmgcs2:NM_008256:exon8:c.1298delC:p.L435Wfs*13	3qF2.2	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr3	100075744	12A2p6	cell line	sgMsh2	100075744	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	125	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon30:c.A4359C:p.E1453D	3qF2.2	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	100892563	12A2p6	cell line	sgMsh2	100892563	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	85	0	0	NA	exonic	Vtcn1	synonymous SNV	Vtcn1:NM_178594:exon5:c.A739C:p.R247R	3qF2.2	chr3-86786943-102854538	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	106	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	103337507	12A2p6	cell line	sgMsh2	103337507	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	83	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon12:c.T2209G:p.S737A,Trim33:NM_053170:exon12:c.T2209G:p.S737A"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999859	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	103737934	12A2p6	cell line	sgMsh2	103737934	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	37	0	0	NA	exonic	Olfml3	nonsynonymous SNV	Olfml3:NM_133859:exon1:c.T2G:p.M1R	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9987833	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	103928888	12A2p6	cell line	sgMsh2	103928888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	exonic	Rsbn1	nonsynonymous SNV	"Rsbn1:NM_001356556:exon2:c.T1241C:p.I414T,Rsbn1:NM_001356557:exon2:c.T1235C:p.I412T,Rsbn1:NM_001356558:exon2:c.T1241C:p.I414T,Rsbn1:NM_172684:exon2:c.T1241C:p.I414T"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	104051031	12A2p6	cell line	sgMsh2	104051031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	186	0	0	NA	exonic	Magi3	synonymous SNV	"Magi3:NM_001159354:exon10:c.A1737G:p.L579L,Magi3:NM_133853:exon10:c.A1737G:p.L579L"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.65E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	104085353	12A2p6	cell line	sgMsh2	104085353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	136	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon5:c.T802G:p.C268G,Magi3:NM_133853:exon5:c.T802G:p.C268G"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	104785847	12A2p6	cell line	sgMsh2	104785847	T	A	SNV	Mutect2;Vardict	2	0.18	22	0	0	NA	exonic	Ppm1j	nonsynonymous SNV	Ppm1j:NM_027982:exon10:c.T1519A:p.S507T	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.994809	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	106128209	12A2p6	cell line	sgMsh2	106128209	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	255	0	0	NA	exonic	Chia1	synonymous SNV	Chia1:NM_023186:exon6:c.T540C:p.V180V	3qF2.2	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.577884926	2	1.11E-08	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	73	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-102864579-107472486	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	108351702	12A2p6	cell line	sgMsh2	108351702	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	102	0	0	NA	exonic	Sort1	synonymous SNV	"Sort1:NM_001271599:exon16:c.C2049A:p.A683A,Sort1:NM_019972:exon16:c.C2049A:p.A683A"	3qF3	chr3-107473246-108562175	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.990659873	1	0.9999966	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr3	108377411	12A2p6	cell line	sgMsh2	108377411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	142	0	0	NA	exonic	Mybphl	nonsynonymous SNV	Mybphl:NM_026831:exon7:c.A973G:p.S325G	3qF3	chr3-107473246-108562175	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	71	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	109163532	12A2p6	cell line	sgMsh2	109163532	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.356	95	0	0	NA	exonic	Slc25a24	frameshift deletion	Slc25a24:NM_172685:exon9:c.1206delC:p.L404Wfs*3	3qF3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr3	114094529	12A2p6	cell line	sgMsh2	114094529	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	151	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon6:c.G787A:p.D263N	3qF3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.02E-08	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	115122270	12A2p6	cell line	sgMsh2	115122270	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.T751A:p.Y251N,Olfm3:NM_153157:exon6:c.T850A:p.Y284N,Olfm3:NM_153458:exon6:c.T790A:p.Y264N"	3qF3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999895	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	116891951	12A2p6	cell line	sgMsh2	116891951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	149	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon9:c.T970C:p.Y324H,Frrs1:NM_009146:exon9:c.T970C:p.Y324H"	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.44E-08	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	121992888	12A2p6	cell line	sgMsh2	121992888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	164	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.A1101G:p.Q367Q,Arhgap29:NM_172525:exon11:c.A1101G:p.Q367Q"	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	AAC	synonymous	AACA	9	AACAAACAA	NA
SSC_p20	chr3	121992907	12A2p6	cell line	sgMsh2	121992907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	149	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.T1120C:p.L374L,Arhgap29:NM_172525:exon11:c.T1120C:p.L374L"	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr3	122141699	12A2p6	cell line	sgMsh2	122141699	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	180	0	0	NA	exonic	Abca4	synonymous SNV	Abca4:NM_007378:exon31:c.G4545A:p.Q1515Q	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr3	122275474	12A2p6	cell line	sgMsh2	122275474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	171	0	0	NA	exonic	Dnttip2	nonsynonymous SNV	Dnttip2:NM_153806:exon2:c.A337G:p.T113A	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.77E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	175	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.88E-09	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	124413820	12A2p6	cell line	sgMsh2	124413820	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	exonic	1700006A11Rik	frameshift deletion	"1700006A11Rik:NM_001357195:exon6:c.505delT:p.S169Pfs*2,1700006A11Rik:NM_027939:exon7:c.721delT:p.S241Pfs*2"	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr3	125438267	12A2p6	cell line	sgMsh2	125438267	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	149	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A484C:p.I162L	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	126834575	12A2p6	cell line	sgMsh2	126834575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	214	0	0	NA	exonic	Camk2d	synonymous SNV	"Camk2d:NM_001025438:exon15:c.A1035G:p.A345A,Camk2d:NM_023813:exon15:c.A1035G:p.A345A,Camk2d:NM_001293664:exon16:c.A1077G:p.A359A,Camk2d:NM_001293665:exon16:c.A639G:p.A213A,Camk2d:NM_001025439:exon17:c.A1137G:p.A379A,Camk2d:NM_001293663:exon17:c.A1137G:p.A379A,Camk2d:NM_001346635:exon17:c.A1137G:p.A379A,Camk2d:NM_001346636:exon17:c.A1137G:p.A379A"	3qG1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	98	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	132178080	12A2p6	cell line	sgMsh2	132178080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	157	0	0	NA	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon4:c.A740G:p.Y247C	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.18E-08	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	132715641	12A2p6	cell line	sgMsh2	132715641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	55	0	0	NA	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon6:c.A508G:p.T170A	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997874	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	132885813	12A2p6	cell line	sgMsh2	132885813	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	104	0	0	NA	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1545A:p.N515K,Npnt:NM_001287103:exon11:c.T1233A:p.N411K,Npnt:NM_001287102:exon12:c.T1638A:p.N546K,Npnt:NM_033525:exon12:c.T1596A:p.N532K,Npnt:NM_001287101:exon13:c.T1689A:p.N563K"	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	132	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	137865619	12A2p6	cell line	sgMsh2	137865619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	111	0	0	NA	exonic	H2az1	nonsynonymous SNV	"H2az1:NM_001316995:exon3:c.T181C:p.Y61H,H2az1:NM_016750:exon3:c.T181C:p.Y61H"	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	138148506	12A2p6	cell line	sgMsh2	138148506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	105	0	0	NA	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon3:c.T344C:p.V115A,Trmt10a:NM_175389:exon3:c.T344C:p.V115A,Trmt10a:NM_001348197:exon4:c.T344C:p.V115A"	3qG3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9999193	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	139015582	12A2p6	cell line	sgMsh2	139015582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	127	0	0	NA	exonic	Rap1gds1	nonsynonymous SNV	"Rap1gds1:NM_001040690:exon4:c.A325G:p.T109A,Rap1gds1:NM_001286759:exon4:c.A325G:p.T109A,Rap1gds1:NM_001356388:exon4:c.A325G:p.T109A,Rap1gds1:NM_145544:exon4:c.A325G:p.T109A"	3qH1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	139298464	12A2p6	cell line	sgMsh2	139298464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	128	0	0	NA	exonic	Stpg2	nonsynonymous SNV	Stpg2:NM_198659:exon7:c.G801A:p.M267I	3qH1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	142312189	12A2p6	cell line	sgMsh2	142312189	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	125	0	0	NA	exonic	Pdlim5	nonsynonymous SNV	"Pdlim5:NM_001190857:exon4:c.A317C:p.E106A,Pdlim5:NM_022554:exon4:c.A317C:p.E106A,Pdlim5:NM_001190852:exon5:c.A317C:p.E106A,Pdlim5:NM_001190854:exon5:c.A317C:p.E106A,Pdlim5:NM_001190855:exon5:c.A317C:p.E106A,Pdlim5:NM_001190856:exon5:c.A317C:p.E106A,Pdlim5:NM_019808:exon5:c.A644C:p.E215A,Pdlim5:NM_019809:exon5:c.A644C:p.E215A"	3qH1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	142618173	12A2p6	cell line	sgMsh2	142618173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	125	0	0	NA	exonic	Gbp2b	nonsynonymous SNV	Gbp2b:NM_010259:exon11:c.A1738G:p.M580V	3qH1	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.7842724	1	0.9748115	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	144925331	12A2p6	cell line	sgMsh2	144925331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	85	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon6:c.A767G:p.N256S	3qH2	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	145441622	12A2p6	cell line	sgMsh2	145441622	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	174	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon30:c.A354G:p.K118K,Col24a1:NM_027770:exon30:c.A2898G:p.K966K"	3qH2	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.247664968	3	0.9999955	AAG	synonymous	A	5	AAAAA	NA
SSC_p20	chr3	146241120	12A2p6	cell line	sgMsh2	146241120	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	103	0	0	NA	exonic	Lpar3	synonymous SNV	Lpar3:NM_022983:exon2:c.T552C:p.S184S	3qH2	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.288942463	3	0.9843659	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	148821406	12A2p6	cell line	sgMsh2	148821406	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	105	0	0	NA	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon23:c.A3583G:p.M1195V	3qH3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999983	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	153509458	12A2p6	cell line	sgMsh2	153509458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	52	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon2:c.A58G:p.I20V	3qH3	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	154265529	12A2p6	cell line	sgMsh2	154265529	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	160	0	0	NA	exonic	Slc44a5	frameshift deletion	Slc44a5:NM_001081263:exon21:c.2015delT:p.F673Sfs*7	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr3	154621691	12A2p6	cell line	sgMsh2	154621691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	210	0	0	NA	exonic	Cryz	stopgain	"Cryz:NM_001357672:exon8:c.C751T:p.R251X,Cryz:NM_001357673:exon8:c.C751T:p.R251X,Cryz:NM_001357674:exon8:c.C751T:p.R251X,Cryz:NM_001357675:exon8:c.C751T:p.R251X,Cryz:NM_001357676:exon8:c.C751T:p.R251X,Cryz:NM_009968:exon8:c.C751T:p.R251X"	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	4.56E-09	TCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	154720125	12A2p6	cell line	sgMsh2	154720125	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	83	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon3:c.G258A:p.A86A	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr3	154727461	12A2p6	cell line	sgMsh2	154727461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	169	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon4:c.G480A:p.G160G	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.36E-09	GGA	synonymous	NA	NA	NA	NA
SSC_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	69	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999453	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	155055306	12A2p6	cell line	sgMsh2	155055306	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	122	0	0	NA	exonic	Tnni3k	frameshift deletion	Tnni3k:NM_177066:exon1:c.1delA:p.M1Wfs*26	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr3	157016244	12A2p6	cell line	sgMsh2	157016244	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	229	0	0	NA	exonic	Negr1	nonsynonymous SNV	"Negr1:NM_001039094:exon3:c.C454T:p.L152F,Negr1:NM_177274:exon3:c.C454T:p.L152F"	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.271252108	3	0.9999963	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr3	158318471	12A2p6	cell line	sgMsh2	158318471	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	129	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon4:c.C385A:p.L129I,Lrrc7:NM_001370782:exon4:c.C385A:p.L129I,Lrrc7:NM_001081358:exon5:c.C286A:p.L96I,Lrrc7:NM_001291452:exon5:c.C286A:p.L96I,Lrrc7:NM_001291453:exon5:c.C286A:p.L96I"	3qH4	chr3-108571396-159913826	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	8752517	12A2p6	cell line	sgMsh2	8752517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	110	0	0	NA	exonic	Chd7	nonsynonymous SNV	Chd7:NM_001277149:exon2:c.T1013C:p.V338A	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999999	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	11705939	12A2p6	cell line	sgMsh2	11705939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	63	0	0	NA	exonic	Gem	nonsynonymous SNV	Gem:NM_010276:exon2:c.G26A:p.R9H	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	12053539	12A2p6	cell line	sgMsh2	12053539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	185	0	0	NA	exonic	Tmem67	nonsynonymous SNV	Tmem67:NM_177861:exon20:c.A1999G:p.T667A	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.71E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	14548485	12A2p6	cell line	sgMsh2	14548485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	133	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon7:c.C803T:p.A268V	4qA1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	14913763	12A2p6	cell line	sgMsh2	14913763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	228	0	0	NA	exonic	Pip4p2	nonsynonymous SNV	Pip4p2:NM_028264:exon7:c.T670A:p.Y224N	4qA2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	97	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	19525129	12A2p6	cell line	sgMsh2	19525129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	61	0	0	NA	exonic	Cpne3	synonymous SNV	"Cpne3:NM_027769:exon15:c.A1365G:p.G455G,Cpne3:NM_001356481:exon16:c.A669G:p.G223G"	4qA3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	86	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	77	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	32725960	12A2p6	cell line	sgMsh2	32725960	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.355	80	0	0	NA	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon51:c.7878delA:p.N2627Tfs*25	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	117	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	33246353	12A2p6	cell line	sgMsh2	33246353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	70	0	0	NA	exonic	Pnrc1	nonsynonymous SNV	Pnrc1:NM_001033225:exon2:c.A605C:p.E202A	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	34565153	12A2p6	cell line	sgMsh2	34565153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	156	0	0	NA	exonic	Akirin2	synonymous SNV	Akirin2:NM_001007589:exon3:c.A399G:p.P133P	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	CAT	synonymous	A	5	AAAAA	NA
SSC_p20	chr4	34572529	12A2p6	cell line	sgMsh2	34572529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	73	0	0	NA	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon18:c.T1895C:p.I632T,Orc3:NM_015824:exon18:c.T1898C:p.I633T"	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	34808204	12A2p6	cell line	sgMsh2	34808204	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	165	0	0	NA	exonic	Zfp292	frameshift deletion	Zfp292:NM_013889:exon8:c.4854delA:p.V1619Lfs*4	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	104	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	34816365	12A2p6	cell line	sgMsh2	34816365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	94	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon7:c.T923C:p.V308A	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	39451103	12A2p6	cell line	sgMsh2	39451103	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	80	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A308C:p.N103T	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	41498291	12A2p6	cell line	sgMsh2	41498291	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	56	0	0	NA	exonic	Myorg	synonymous SNV	Myorg:NM_001085515:exon2:c.C1338T:p.H446H	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	GGT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	43449514	12A2p6	cell line	sgMsh2	43449514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	95	0	0	NA	exonic	Cd72	synonymous SNV	"Cd72:NM_001110322:exon5:c.C690T:p.S230S,Cd72:NM_001110321:exon6:c.C801T:p.S267S,Cd72:NM_001110320:exon7:c.C873T:p.S291S,Cd72:NM_007654:exon7:c.C852T:p.S284S"	4qA5	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999956	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	44037209	12A2p6	cell line	sgMsh2	44037209	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	exonic	Gne	nonsynonymous SNV	"Gne:NM_001357539:exon11:c.A1466G:p.D489G,Gne:NM_001190414:exon12:c.A2078G:p.D693G,Gne:NM_015828:exon12:c.A2171G:p.D724G"	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996548	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	45279392	12A2p6	cell line	sgMsh2	45279392	T	C	SNV	Mutect2;Strelka2	2	0.273	59	0	0	NA	exonic	Frmpd1	nonsynonymous SNV	Frmpd1:NM_001081172:exon15:c.T2116C:p.Y706H	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998558	CTA	nonsynonymous	GACT	8	GACTGACT	NA
SSC_p20	chr4	45399900	12A2p6	cell line	sgMsh2	45399900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.174	179	0	0	NA	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.T238C:p.L80L	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.27E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	46007511	12A2p6	cell line	sgMsh2	46007511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	79	0	0	NA	exonic	Tdrd7	nonsynonymous SNV	"Tdrd7:NM_001290475:exon8:c.A1562C:p.E521A,Tdrd7:NM_001355189:exon8:c.A1463C:p.E488A,Tdrd7:NM_146142:exon8:c.A1463C:p.E488A"	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	46166741	12A2p6	cell line	sgMsh2	46166741	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	52	0	0	NA	exonic	Ncbp1	nonsynonymous SNV	Ncbp1:NM_001033201:exon17:c.A1604G:p.E535G	4qB1	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	53040735	12A2p6	cell line	sgMsh2	53040735	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	74	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon44:c.T5911G:p.F1971V	4qB2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	53543568	12A2p6	cell line	sgMsh2	53543568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	50	0	0	NA	exonic	Slc44a1	nonsynonymous SNV	"Slc44a1:NM_001159633:exon10:c.T1111G:p.F371V,Slc44a1:NM_001374697:exon10:c.T1111G:p.F371V,Slc44a1:NM_133891:exon10:c.T1111G:p.F371V"	4qB2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996548	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	80	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	58084157	12A2p6	cell line	sgMsh2	58084157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	65	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon35:c.T5614C:p.C1872R	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999194	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	58486775	12A2p6	cell line	sgMsh2	58486775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	61	0	0	NA	exonic	Lpar1	synonymous SNV	"Lpar1:NM_001290486:exon2:c.G441T:p.V147V,Lpar1:NM_010336:exon3:c.G495T:p.V165V,Lpar1:NM_172989:exon3:c.G495T:p.V165V"	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CCA	synonymous	CAC	12	CACCACCACCAC	NA
SSC_p20	chr4	58824277	12A2p6	cell line	sgMsh2	58824277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	83	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon30:c.T3357C:p.P1119P,Ecpas:NM_172381:exon30:c.T3339C:p.P1113P,Ecpas:NM_001355697:exon31:c.T3339C:p.P1113P"	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	58872682	12A2p6	cell line	sgMsh2	58872682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	65	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon6:c.T636C:p.G212G,Ecpas:NM_172381:exon6:c.T618C:p.G206G,Ecpas:NM_001355697:exon7:c.T618C:p.G206G"	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999194	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	59022628	12A2p6	cell line	sgMsh2	59022628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	57	0	0	NA	exonic	Dnajc25	nonsynonymous SNV	Dnajc25:NM_001033165:exon4:c.A1019G:p.Y340C	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	59524445	12A2p6	cell line	sgMsh2	59524445	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	60	0	0	NA	exonic	Ptbp3	nonsynonymous SNV	Ptbp3:NM_144904:exon3:c.T74A:p.V25D	4qB3	chr4-3172993-59912905	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998691	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	140	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	64007763	12A2p6	cell line	sgMsh2	64007763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	0	0	NA	exonic	Tnc	nonsynonymous SNV	"Tnc:NM_001369213:exon7:c.T1996C:p.Y666H,Tnc:NM_001369211:exon8:c.T2779C:p.Y927H,Tnc:NM_001369212:exon8:c.T2779C:p.Y927H,Tnc:NM_001369214:exon8:c.T2779C:p.Y927H,Tnc:NM_011607:exon8:c.T2779C:p.Y927H"	4qC1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998249	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	65204930	12A2p6	cell line	sgMsh2	65204930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	96	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon7:c.T2501C:p.I834T	4qC1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	65613639	12A2p6	cell line	sgMsh2	65613639	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	58	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.G432T:p.E144D,Trim32:NM_053084:exon2:c.G432T:p.E144D"	4qC1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998411	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	80	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr4	70317460	12A2p6	cell line	sgMsh2	70317460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	56	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon10:c.A624G:p.T208T,Cdk5rap2:NM_145990:exon13:c.A1443G:p.T481T"	4qC2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	CTG	synonymous	ACTGCC	12	ACTGCCACTGCC	NA
SSC_p20	chr4	72852198	12A2p6	cell line	sgMsh2	72852198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	187	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.T372A:p.R124R	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.59E-09	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	74170660	12A2p6	cell line	sgMsh2	74170660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	56	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon13:c.A1093G:p.S365G,Frmd3:NM_172869:exon13:c.A1093G:p.S365G"	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998071	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	75956378	12A2p6	cell line	sgMsh2	75956378	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon24:c.G3815T:p.R1272M,Ptprd:NM_001352629:exon25:c.G3827T:p.R1276M,Ptprd:NM_001352630:exon25:c.G3824T:p.R1275M,Ptprd:NM_001368993:exon25:c.G3854T:p.R1285M,Ptprd:NM_001352628:exon26:c.G3866T:p.R1289M,Ptprd:NM_001368991:exon35:c.G3839T:p.R1280M,Ptprd:NM_011211:exon35:c.G3842T:p.R1281M"	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	83263748	12A2p6	cell line	sgMsh2	83263748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	114	0	0	NA	exonic	Ttc39b	nonsynonymous SNV	Ttc39b:NM_027238:exon4:c.T233C:p.L78P	4qC3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	86087731	12A2p6	cell line	sgMsh2	86087731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	70	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon2:c.A86G:p.E29G,Adamtsl1:NM_029967:exon2:c.A86G:p.E29G"	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999504	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	86585367	12A2p6	cell line	sgMsh2	86585367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	67	0	0	NA	exonic	Haus6	nonsynonymous SNV	Haus6:NM_173400:exon15:c.T1720A:p.L574I	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	87840915	12A2p6	cell line	sgMsh2	87840915	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	73	0	0	NA	exonic	Mllt3	frameshift deletion	Mllt3:NM_027326:exon5:c.895delA:p.R299Gfs*18	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	6	TTTTTT	-1
SSC_p20	chr4	88408934	12A2p6	cell line	sgMsh2	88408934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	166	0	0	NA	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon43:c.T5261C:p.L1754P	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	88820339	12A2p6	cell line	sgMsh2	88820339	G	-	Deletion	Strelka2;Vardict	2	0.4335	376	0	0	NA	exonic	Ifna11	frameshift deletion	Ifna11:NM_008333:exon1:c.381delG:p.V129Cfs*5	4qC4	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr4	95812157	12A2p6	cell line	sgMsh2	95812157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	93	0	0	NA	exonic	Fggy	nonsynonymous SNV	"Fggy:NM_001113412:exon10:c.A1064G:p.K355R,Fggy:NM_029347:exon10:c.A1064G:p.K355R"	4qC5	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	96307294	12A2p6	cell line	sgMsh2	96307294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	121	0	0	NA	exonic	Cyp2j11	synonymous SNV	Cyp2j11:NM_001004141:exon7:c.T1164C:p.A388A	4qC5	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	96503958	12A2p6	cell line	sgMsh2	96503958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	150	0	0	NA	exonic	Cyp2j8	synonymous SNV	Cyp2j8:NM_001104927:exon2:c.T258C:p.G86G	4qC5	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.22E-08	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	96545806	12A2p6	cell line	sgMsh2	96545806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	106	0	0	NA	exonic	Cyp2j6	nonsynonymous SNV	Cyp2j6:NM_010008:exon2:c.T266C:p.V89A	4qC5	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	98020925	12A2p6	cell line	sgMsh2	98020925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	89	0	0	NA	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon6:c.A986G:p.Q329R,Nfia:NM_001122953:exon6:c.A917G:p.Q306R,Nfia:NM_010905:exon6:c.A917G:p.Q306R"	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	CAG	nonsynonymous	CCAGT	10	CCAGTCCAGT	NA
SSC_p20	chr4	98944672	12A2p6	cell line	sgMsh2	98944672	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	126	0	0	NA	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_026082:exon45:c.C5947T:p.L1983F,Dock7:NM_001290636:exon46:c.C6037T:p.L2013F,Dock7:NM_001369285:exon46:c.C5953T:p.L1985F,Dock7:NM_001369286:exon47:c.C6043T:p.L2015F"	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	162	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	7.62E-09	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
SSC_p20	chr4	102595966	12A2p6	cell line	sgMsh2	102595966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon3:c.A358G:p.T120A,Pde4b:NM_001177981:exon3:c.A175G:p.T59A,Pde4b:NM_001177982:exon3:c.A118G:p.T40A,Pde4b:NM_001374780:exon8:c.A643G:p.T215A,Pde4b:NM_019840:exon8:c.A829G:p.T277A"	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	103143160	12A2p6	cell line	sgMsh2	103143160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	74	0	0	NA	exonic	Mier1	nonsynonymous SNV	"Mier1:NM_001039081:exon7:c.A564C:p.Q188H,Mier1:NM_001286223:exon7:c.A561C:p.Q187H,Mier1:NM_001286221:exon9:c.A699C:p.Q233H,Mier1:NM_001286222:exon9:c.A615C:p.Q205H,Mier1:NM_027696:exon9:c.A615C:p.Q205H"	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	104862676	12A2p6	cell line	sgMsh2	104862676	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	94	0	0	NA	exonic	C8a	nonsynonymous SNV	"C8a:NM_001290645:exon2:c.G104T:p.W35L,C8a:NM_001316667:exon3:c.G236T:p.W79L,C8a:NM_146148:exon3:c.G236T:p.W79L"	4qC6	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	1	0.9999817	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	108008226	12A2p6	cell line	sgMsh2	108008226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	141	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon7:c.T880C:p.F294L	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	108021456	12A2p6	cell line	sgMsh2	108021456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	76	0	0	NA	exonic	Podn	nonsynonymous SNV	"Podn:NM_001285956:exon10:c.T1213C:p.Y405H,Podn:NM_001285958:exon10:c.T1213C:p.Y405H,Podn:NM_172874:exon10:c.T1213C:p.Y405H"	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	108513542	12A2p6	cell line	sgMsh2	108513542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	48	0	0	NA	exonic	Tut4	synonymous SNV	"Tut4:NM_001379663:exon13:c.T2754C:p.D918D,Tut4:NM_001379664:exon13:c.T2754C:p.D918D,Tut4:NM_001379665:exon13:c.T2754C:p.D918D,Tut4:NM_175472:exon14:c.T2754C:p.D918D"	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.8514077	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr4	108826109	12A2p6	cell line	sgMsh2	108826109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	169	0	0	NA	exonic	Btf3l4	synonymous SNV	"Btf3l4:NM_001356361:exon3:c.T159C:p.G53G,Btf3l4:NM_027453:exon3:c.T159C:p.G53G"	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.36E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	108890386	12A2p6	cell line	sgMsh2	108890386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	68	0	0	NA	exonic	Rab3b	nonsynonymous SNV	Rab3b:NM_023537:exon2:c.A79G:p.I27V	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	109430866	12A2p6	cell line	sgMsh2	109430866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	41	0	0	NA	exonic	Ttc39a	nonsynonymous SNV	"Ttc39a:NM_001145948:exon9:c.T668C:p.L223P,Ttc39a:NM_153392:exon9:c.T662C:p.L221P"	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9991742	CTG	nonsynonymous	GCT	8	GCTGCTGC	NA
SSC_p20	chr4	109514830	12A2p6	cell line	sgMsh2	109514830	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.446	45	0	0	NA	exonic	4930522H14Rik	frameshift deletion	"4930522H14Rik:NM_001199090:exon4:c.282delA:p.A95Lfs*22,4930522H14Rik:NM_026291:exon4:c.294delA:p.A99Lfs*22"	4qC7	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr4	112298156	12A2p6	cell line	sgMsh2	112298156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	96	0	0	NA	exonic	Skint3	nonsynonymous SNV	"Skint3:NM_177578:exon8:c.A1110G:p.I370M,Skint3:NM_001348354:exon9:c.A978G:p.I326M,Skint3:NM_001102474:exon10:c.A1326G:p.I442M"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999996	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	112728889	12A2p6	cell line	sgMsh2	112728889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	45	0	0	NA	exonic	Skint10	stopgain	Skint10:NM_177668:exon4:c.G529T:p.G177X	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994396	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	113004506	12A2p6	cell line	sgMsh2	113004506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	173	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon23:c.T1853C:p.M618T	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.28E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	113483888	12A2p6	cell line	sgMsh2	113483888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon56:c.T4150C:p.Y1384H,Skint5:NM_001167876:exon57:c.T4213C:p.Y1405H"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	113571596	12A2p6	cell line	sgMsh2	113571596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	150	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon43:c.T3180C:p.S1060S,Skint5:NM_001167878:exon43:c.T3180C:p.S1060S"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.22E-08	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	115014223	12A2p6	cell line	sgMsh2	115014223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	116	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon8:c.A311G:p.N104S,Stil:NM_001304555:exon9:c.A989G:p.N330S,Stil:NM_001304559:exon9:c.A989G:p.N330S,Stil:NM_009185:exon9:c.A989G:p.N330S"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2632	57	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
SSC_p20	chr4	115496100	12A2p6	cell line	sgMsh2	115496100	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.445	45	0	0	NA	exonic	Cyp4a14	frameshift deletion	Cyp4a14:NM_007822:exon1:c.14delT:p.L5Yfs*59	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	TAAA	8	TAAATAAA	-1
SSC_p20	chr4	115866539	12A2p6	cell line	sgMsh2	115866539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	87	0	0	NA	exonic	Mknk1	nonsynonymous SNV	"Mknk1:NM_001355174:exon7:c.A430G:p.T144A,Mknk1:NM_001369238:exon7:c.A430G:p.T144A,Mknk1:NM_021461:exon7:c.A430G:p.T144A,Mknk1:NM_001285488:exon8:c.A430G:p.T144A,Mknk1:NM_001285487:exon9:c.A448G:p.T150A"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	116327723	12A2p6	cell line	sgMsh2	116327723	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	78	0	0	NA	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon8:c.T791G:p.F264C,Mast2:NM_008641:exon8:c.T791G:p.F264C,Mast2:NM_001042743:exon9:c.T812G:p.F271C,Mast2:NM_001369061:exon9:c.T812G:p.F271C"	4qD1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999772	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	118211472	12A2p6	cell line	sgMsh2	118211472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	60	0	0	NA	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon29:c.T5098C:p.Y1700H	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998691	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	118385860	12A2p6	cell line	sgMsh2	118385860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	70	0	0	NA	exonic	Szt2	nonsynonymous SNV	Szt2:NM_198170:exon29:c.A4300G:p.I1434V	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999504	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	118734571	12A2p6	cell line	sgMsh2	118734571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	93	0	0	NA	exonic	Olfr1339	nonsynonymous SNV	Olfr1339:NM_146852:exon1:c.A41G:p.E14G	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	101	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999975	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	119478012	12A2p6	cell line	sgMsh2	119478012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	39	0	0	NA	exonic	Rimkla	nonsynonymous SNV	Rimkla:NM_177572:exon2:c.T173C:p.L58P	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9989976	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	120096995	12A2p6	cell line	sgMsh2	120096995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	33	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A2507G:p.Q836R	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9982077	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	120098500	12A2p6	cell line	sgMsh2	120098500	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	87	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A4012C:p.T1338P	4qD2.1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	120535763	12A2p6	cell line	sgMsh2	120535763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	37	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon4:c.C1051T:p.R351C	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9987833	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	123350913	12A2p6	cell line	sgMsh2	123350913	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	102	0	0	NA	exonic	Macf1	frameshift deletion	"Macf1:NM_001199137:exon93:c.15963delC:p.R5322Gfs*38,Macf1:NM_001199136:exon98:c.22044delC:p.R7349Gfs*38"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	127	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	CAG	synonymous	GT	8	GTGTGTGT	NA
SSC_p20	chr4	123471072	12A2p6	cell line	sgMsh2	123471072	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	55	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.T9895C:p.F3299L	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997874	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	123475869	12A2p6	cell line	sgMsh2	123475870	AT	TC	DBS	Mutect2;Vardict	2	0.333	129	0	0	NA	exonic	Macf1	nonframeshift substitution	Macf1:NM_001199136:exon36:c.5097_5098GA:p.S1700T	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	108	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	68	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	126575864	12A2p6	cell line	sgMsh2	126575864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	51	0	0	NA	exonic	Clspn	nonsynonymous SNV	Clspn:NM_175554:exon13:c.C2225T:p.S742L	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996867	TCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	126832123	12A2p6	cell line	sgMsh2	126832123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	85	0	0	NA	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon9:c.A1325G:p.H442R,AU040320:NM_001035526:exon9:c.A1325G:p.H442R,AU040320:NM_133886:exon9:c.A1325G:p.H442R,AU040320:NM_001355196:exon11:c.A1262G:p.H421R"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999884	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	127048748	12A2p6	cell line	sgMsh2	127048748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	116	0	0	NA	exonic	Zmym1	nonsynonymous SNV	"Zmym1:NM_026670:exon8:c.T1846C:p.F616L,Zmym1:NM_001356311:exon9:c.T1630C:p.F544L"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	127988083	12A2p6	cell line	sgMsh2	127988083	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	9	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon1:c.G14T:p.R5L	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9817219	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	138	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	128475742	12A2p6	cell line	sgMsh2	128475742	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	75	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon36:c.A5666C:p.E1889A	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999694	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	128534263	12A2p6	cell line	sgMsh2	128534263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	79	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon56:c.C8806T:p.R2936C	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	27	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	68	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	129076254	12A2p6	cell line	sgMsh2	129076254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	72	0	0	NA	exonic	Rnf19b	synonymous SNV	"Rnf19b:NM_001368763:exon5:c.A1233G:p.P411P,Rnf19b:NM_029219:exon5:c.A1230G:p.P410P"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	129555543	12A2p6	cell line	sgMsh2	129555543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	42	0	0	NA	exonic	Lck	synonymous SNV	"Lck:NM_010693:exon8:c.G960A:p.E320E,Lck:NM_001162432:exon9:c.G993A:p.E331E,Lck:NM_001162433:exon9:c.G960A:p.E320E"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	TCT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	130166970	12A2p6	cell line	sgMsh2	130166970	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	88	0	0	NA	exonic	Tinagl1	synonymous SNV	"Tinagl1:NM_001168333:exon10:c.C1146T:p.H382H,Tinagl1:NM_023476:exon10:c.C1146T:p.H382H"	4qD2.2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	TGT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	132386922	12A2p6	cell line	sgMsh2	132386922	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.484	93	0	0	NA	exonic	Phactr4	frameshift deletion	"Phactr4:NM_001161797:exon3:c.160delA:p.S54Afs*17,Phactr4:NM_175306:exon3:c.160delA:p.S54Afs*11"	4qD2.3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
SSC_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	34	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9983731	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	133693973	12A2p6	cell line	sgMsh2	133693973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	110	0	0	NA	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon8:c.T2520G:p.G840G,Arid1a:NM_001363070:exon8:c.T1365G:p.G455G"	4qD2.3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999999	GAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	128	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	134362714	12A2p6	cell line	sgMsh2	134362714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	0	0	NA	exonic	Extl1	nonsynonymous SNV	"Extl1:NM_001355493:exon5:c.T275C:p.I92T,Extl1:NM_019578:exon5:c.T1082C:p.I361T"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999845	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	135557456	12A2p6	cell line	sgMsh2	135557457	GT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	103	0	0	NA	exonic	Grhl3	frameshift deletion	Grhl3:NM_001013756:exon4:c.323_324del:p.H108Pfs*45	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.778375615	NA	NA	GGT	frameshift	NA	NA	NA	-2
SSC_p20	chr4	137543941	12A2p6	cell line	sgMsh2	137543941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	63	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon57:c.A7388G:p.H2463R	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr4	137548079	12A2p6	cell line	sgMsh2	137548079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	117	0	0	NA	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon63:c.A8217G:p.G2739G	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	GAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	138286439	12A2p6	cell line	sgMsh2	138286439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	53	0	0	NA	exonic	Kif17	nonsynonymous SNV	Kif17:NM_010623:exon7:c.A1241G:p.E414G	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	0.9993754	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	138289303	12A2p6	cell line	sgMsh2	138289303	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.186	62	0	0	NA	exonic	Kif17	synonymous SNV	"Kif17:NM_001190978:exon7:c.T1296C:p.A432A,Kif17:NM_010623:exon9:c.T2007C:p.A669A"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998922	CTG	synonymous	TGTGGC	14	TGTGGCTGTGGCTG	NA
SSC_p20	chr4	138895880	12A2p6	cell line	sgMsh2	138895880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	57	0	0	NA	exonic	Otud3	nonsynonymous SNV	"Otud3:NM_001377091:exon6:c.T470C:p.L157P,Otud3:NM_001377089:exon8:c.T1190C:p.L397P,Otud3:NM_001377090:exon8:c.T746C:p.L249P,Otud3:NM_028453:exon8:c.T1049C:p.L350P"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998249	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	55	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr4	140748198	12A2p6	cell line	sgMsh2	140748198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	68	0	0	NA	exonic	Padi4	nonsynonymous SNV	Padi4:NM_011061:exon15:c.T1655C:p.L552P	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999397	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	141046782	12A2p6	cell line	sgMsh2	141046782	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.177	47	0	0	NA	exonic	Crocc	nonsynonymous SNV	Crocc:NM_172122:exon5:c.A617G:p.Q206R	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9995383	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
SSC_p20	chr4	141395708	12A2p6	cell line	sgMsh2	141395708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	32	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon4:c.T386C:p.M129T,Clcnka:NM_024412:exon5:c.T386C:p.M129T"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9980255	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	141473875	12A2p6	cell line	sgMsh2	141473875	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	170	0	0	NA	exonic	Spen	synonymous SNV	"Spen:NM_001347235:exon11:c.A7371G:p.P2457P,Spen:NM_019763:exon12:c.A7440G:p.P2480P"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	141478931	12A2p6	cell line	sgMsh2	141478931	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.386	73	0	0	NA	exonic	Spen	frameshift deletion	"Spen:NM_001347235:exon11:c.2315delC:p.P772Hfs*36,Spen:NM_019763:exon12:c.2384delC:p.P795Hfs*36"	4qD3	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr4	141642733	12A2p6	cell line	sgMsh2	141642733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	49	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon2:c.T84C:p.C28C,Plekhm2:NM_001347237:exon2:c.T84C:p.C28C"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr4	143132648	12A2p6	cell line	sgMsh2	143132648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	108	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.T4071C:p.P1357P,Prdm2:NM_001256380:exon8:c.T4071C:p.P1357P"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999988	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr4	143895523	12A2p6	cell line	sgMsh2	143895523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	329	0	0	NA	exonic	Pramel11	nonsynonymous SNV	Pramel11:NM_001085414:exon4:c.T1261C:p.Y421H	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	144362624	12A2p6	cell line	sgMsh2	144362624	C	A	SNV	Mutect2;Vardict	2	0.038	234	0	0	NA	exonic	Pramel31	nonsynonymous SNV	Pramel31:NM_001034101:exon3:c.C511A:p.Q171K	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.224077829	3	2.18E-09	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	144373277	12A2p6	cell line	sgMsh2	144373277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	89	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T917C:p.V306A	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	144555004	12A2p6	cell line	sgMsh2	144555004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	114	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.T1217C:p.I406T	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	144564983	12A2p6	cell line	sgMsh2	144564983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T152C:p.L51P	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	144565004	12A2p6	cell line	sgMsh2	144565004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	114	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T131C:p.M44T	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	145062653	12A2p6	cell line	sgMsh2	145062653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	99	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon59:c.T11492C:p.V3831A,Vps13d:NM_001276465:exon60:c.T11489C:p.V3830A"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	145154816	12A2p6	cell line	sgMsh2	145154816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	88	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.C4206A:p.H1402Q,Vps13d:NM_001276465:exon19:c.C4206A:p.H1402Q"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	145156045	12A2p6	cell line	sgMsh2	145156045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	141	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.T2977C:p.Y993H,Vps13d:NM_001276465:exon19:c.T2977C:p.Y993H"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	145170242	12A2p6	cell line	sgMsh2	145170242	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	114	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon9:c.T1107G:p.D369E,Vps13d:NM_001276465:exon10:c.T1107G:p.D369E"	4qE1	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	148087939	12A2p6	cell line	sgMsh2	148087939	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	exonic	Agtrap	nonsynonymous SNV	Agtrap:NM_009642:exon1:c.A5T:p.E2V	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9957204	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	148562393	12A2p6	cell line	sgMsh2	148562393	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.322	78	0	0	NA	exonic	Exosc10	synonymous SNV	"Exosc10:NM_001355489:exon4:c.A210G:p.V70V,Exosc10:NM_001355490:exon4:c.A459G:p.V153V,Exosc10:NM_016699:exon4:c.A459G:p.V153V"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr4	148671399	12A2p6	cell line	sgMsh2	148671406	GGGGGGGT	-	Deletion	Mutect2;Vardict	2	0.4	65	0	0	NA	exonic	Gm572	frameshift deletion	Gm572:NM_001085505:exon11:c.1171_1178del:p.G392Sfs*40	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GGG	frameshift	G	12	GGGGGGGGGGGG	-8
SSC_p20	chr4	149469049	12A2p6	cell line	sgMsh2	149469049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	103	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A605G:p.D202G,Nmnat1:NM_133435:exon5:c.A605G:p.D202G"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999998	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	149469055	12A2p6	cell line	sgMsh2	149469055	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	105	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A599T:p.E200V,Nmnat1:NM_133435:exon5:c.A599T:p.E200V"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	150617145	12A2p6	cell line	sgMsh2	150617145	C	-	Deletion	Mutect2;Vardict	2	0.079	62	0	0	NA	exonic	Rere	frameshift deletion	Rere:NM_001085492:exon20:c.3981delC:p.L1329Cfs*44	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.465846012	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr4	151983212	12A2p6	cell line	sgMsh2	151983212	T	-	Deletion	Strelka2;Vardict	2	0.0845	71	0	0	NA	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	0.498278329	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr4	152435809	12A2p6	cell line	sgMsh2	152435809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	36	0	0	NA	exonic	Kcnab2	nonsynonymous SNV	"Kcnab2:NM_001252654:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252655:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252656:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355172:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355173:exon2:c.T73C:p.Y25H,Kcnab2:NM_010598:exon2:c.T73C:p.Y25H"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9986596	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	153386480	12A2p6	cell line	sgMsh2	153386480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	90	0	0	NA	exonic	Ajap1	nonsynonymous SNV	Ajap1:NM_001099299:exon3:c.T869C:p.V290A	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	73	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999629	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr4	155847900	12A2p6	cell line	sgMsh2	155847900	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	10	0	0	NA	exonic	Dvl1	nonsynonymous SNV	"Dvl1:NM_001356381:exon1:c.T166G:p.F56V,Dvl1:NM_010091:exon1:c.T166G:p.F56V"	4qE2	chr4-60219345-156223608	4	3	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9834505	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	3571771	12A2p6	cell line	sgMsh2	3571771	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	73	0	0	NA	exonic	1700109H08Rik	frameshift deletion	1700109H08Rik:NM_029843:exon1:c.19delA:p.M9Wfs*54	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr5	3811343	12A2p6	cell line	sgMsh2	3811343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	49	0	0	NA	exonic	Krit1	nonsynonymous SNV	"Krit1:NM_001170552:exon5:c.A443G:p.H148R,Krit1:NM_030675:exon5:c.A443G:p.H148R"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	3890863	12A2p6	cell line	sgMsh2	3890863	T	C	SNV	Mutect2;Vardict	2	0.043	142	0	0	NA	exonic	Mterf1a	nonsynonymous SNV	"Mterf1a:NM_001013023:exon2:c.A1004G:p.D335G,Mterf1a:NM_172135:exon2:c.A1004G:p.D335G"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.253561753	3	0.999916	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	4060413	12A2p6	cell line	sgMsh2	4060413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	76	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon37:c.A9115G:p.S3039G	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	AAG	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr5	7305026	12A2p6	cell line	sgMsh2	7305026	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	183	0	0	NA	exonic	Tex47	frameshift deletion	Tex47:NM_027603:exon2:c.206delA:p.Y69Lfs*7	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAT	frameshift	NA	NA	NA	-1
SSC_p20	chr5	8825617	12A2p6	cell line	sgMsh2	8825617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	270	0	0	NA	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon15:c.A1789G:p.I597V	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	9445497	12A2p6	cell line	sgMsh2	9445497	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.232	148	0	0	NA	exonic	Elapor2	nonsynonymous SNV	"Elapor2:NM_001359885:exon15:c.A1961G:p.K654R,Elapor2:NM_001359886:exon15:c.A1961G:p.K654R,Elapor2:NM_001359884:exon16:c.A2300G:p.K767R,Elapor2:NM_172706:exon16:c.A2300G:p.K767R"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.67E-08	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	9570282	12A2p6	cell line	sgMsh2	9570282	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	145	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon3:c.A961T:p.I321F	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	13565787	12A2p6	cell line	sgMsh2	13565787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	100	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon11:c.A1177G:p.K393E,Sema3a:NM_001243072:exon12:c.A1177G:p.K393E,Sema3a:NM_001243073:exon12:c.A1177G:p.K393E"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	14681131	12A2p6	cell line	sgMsh2	14681131	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	109	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.G9646T:p.A3216S,Pclo:NM_011995:exon6:c.G9646T:p.A3216S"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999989	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	14712864	12A2p6	cell line	sgMsh2	14712864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	170	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.C11350T:p.P3784S,Pclo:NM_011995:exon7:c.C11350T:p.P3784S"	5qA1	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	20611186	12A2p6	cell line	sgMsh2	20611186	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	93	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon18:c.A3010C:p.R1004R,Magi2:NM_015823:exon19:c.A3052C:p.R1018R,Magi2:NM_001170746:exon20:c.A3541C:p.R1181R"	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9998341	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	20896303	12A2p6	cell line	sgMsh2	20896303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	146	0	0	NA	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2238C:p.P746P	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	20998619	12A2p6	cell line	sgMsh2	20998619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	192	0	0	NA	exonic	Ptpn12	nonsynonymous SNV	"Ptpn12:NM_001356591:exon12:c.A803G:p.H268R,Ptpn12:NM_001356592:exon13:c.A803G:p.H268R,Ptpn12:NM_011203:exon13:c.A1160G:p.H387R,Ptpn12:NM_001356590:exon14:c.A1202G:p.H401R"	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.36E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	21316965	12A2p6	cell line	sgMsh2	21316965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	62	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon9:c.T1060C:p.L354L	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	22034612	12A2p6	cell line	sgMsh2	22034612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	100	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon20:c.T2656C:p.F886L	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	22526395	12A2p6	cell line	sgMsh2	22526395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	129	0	0	NA	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon8:c.A792T:p.A264A	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	23492276	12A2p6	cell line	sgMsh2	23492276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	126	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon15:c.A1731C:p.E577D	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAG	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
SSC_p20	chr5	23746525	12A2p6	cell line	sgMsh2	23746525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	74	0	0	NA	exonic	Pus7	nonsynonymous SNV	"Pus7:NM_001289781:exon13:c.A1525G:p.T509A,Pus7:NM_178403:exon13:c.A1525G:p.T509A,Pus7:NM_001289780:exon14:c.A1543G:p.T515A"	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.7310888	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	23805374	12A2p6	cell line	sgMsh2	23805374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	108	0	0	NA	exonic	Rint1	nonsynonymous SNV	Rint1:NM_177323:exon5:c.A580G:p.M194V	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999988	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	23844024	12A2p6	cell line	sgMsh2	23844024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	185	0	0	NA	exonic	Tomm7	nonsynonymous SNV	Tomm7:NM_025394:exon1:c.A50C:p.K17T	5qA3	chr5-3344463-24257921	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9999957	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	24377696	12A2p6	cell line	sgMsh2	24377696	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	107	0	0	NA	exonic	Nos3	nonsynonymous SNV	Nos3:NM_008713:exon15:c.C1921A:p.L641M	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	86	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	24416225	12A2p6	cell line	sgMsh2	24416225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	215	0	0	NA	exonic	Asic3	nonsynonymous SNV	"Asic3:NM_001310474:exon4:c.T942G:p.C314W,Asic3:NM_183000:exon4:c.T942G:p.C314W"	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.04E-09	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	24477100	12A2p6	cell line	sgMsh2	24477100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	168	0	0	NA	exonic	Agap3	nonsynonymous SNV	"Agap3:NM_001256431:exon5:c.T593C:p.V198A,Agap3:NM_001359881:exon5:c.T593C:p.V198A,Agap3:NM_139153:exon5:c.T593C:p.V198A"	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	24593719	12A2p6	cell line	sgMsh2	24593719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	129	0	0	NA	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon10:c.T1091C:p.V364A	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	1	0.9990347	CAC	nonsynonymous	CCTCCA	13	CCTCCACCTCCAC	NA
SSC_p20	chr5	24701418	12A2p6	cell line	sgMsh2	24701418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	115	0	0	NA	exonic	Nub1	nonsynonymous SNV	"Nub1:NM_001305264:exon9:c.A941G:p.Y314C,Nub1:NM_016736:exon9:c.A869G:p.Y290C"	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	2	0.740737	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	25250157	12A2p6	cell line	sgMsh2	25250157	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	exonic	Galnt11	frameshift deletion	"Galnt11:NM_001359890:exon4:c.490delT:p.S165Lfs*33,Galnt11:NM_144908:exon4:c.490delT:p.S165Lfs*33"	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr5	25275725	12A2p6	cell line	sgMsh2	25275725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	148	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon58:c.A14525G:p.H4842R	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	25298887	12A2p6	cell line	sgMsh2	25298887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	142	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon43:c.A11422G:p.S3808G	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	25366098	12A2p6	cell line	sgMsh2	25366098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	42	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon15:c.T2613C:p.S871S	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	25372985	12A2p6	cell line	sgMsh2	25372985	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon14:c.T2295A:p.S765S	5qA3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999935	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	26036027	12A2p6	cell line	sgMsh2	26036027	G	A	SNV	Mutect2;MuSe;Vardict	3	0.097	557	0	0	NA	exonic	Speer4a	synonymous SNV	Speer4a:NM_029376:exon4:c.C466T:p.L156L	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.571988141	2	1	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	26257866	12A2p6	cell line	sgMsh2	26257866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.228	579	0	0	NA	exonic	Gm7361	synonymous SNV	Gm7361:NM_001281527:exon1:c.T105C:p.N35N	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	29765555	12A2p6	cell line	sgMsh2	29765555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	0	0	NA	exonic	Dnajb6	synonymous SNV	"Dnajb6:NM_001037940:exon7:c.T531C:p.S177S,Dnajb6:NM_001127367:exon7:c.T528C:p.S176S,Dnajb6:NM_001359198:exon7:c.T531C:p.S177S,Dnajb6:NM_001378835:exon7:c.T531C:p.S177S,Dnajb6:NM_011847:exon7:c.T531C:p.S177S"	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	30380883	12A2p6	cell line	sgMsh2	30380883	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	63	0	0	NA	exonic	Otof	frameshift deletion	"Otof:NM_001286421:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_001313767:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_031875:exon28:c.3496delG:p.V1166Yfs*4,Otof:NM_001100395:exon29:c.3541delG:p.V1181Yfs*4"	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr5	30488537	12A2p6	cell line	sgMsh2	30488537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	149	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon5:c.T386C:p.L129P	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	30926792	12A2p6	cell line	sgMsh2	30926792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	138	0	0	NA	exonic	Khk	nonsynonymous SNV	"Khk:NM_001310524:exon3:c.G314T:p.S105I,Khk:NM_001349066:exon3:c.G314T:p.S105I"	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.495	81	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
SSC_p20	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	119	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	32331276	12A2p6	cell line	sgMsh2	32331276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	208	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon42:c.A2903G:p.Y968C	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	133	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	32887005	12A2p6	cell line	sgMsh2	32887005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	179	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001170567:exon8:c.A440G:p.K147R,Depdc5:NM_177786:exon8:c.A440G:p.K147R,Depdc5:NM_001025426:exon9:c.A440G:p.K147R"	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	1	7.47E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	33026582	12A2p6	cell line	sgMsh2	33026582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	141	0	0	NA	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.A128C:p.N43T	5qB1	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	34794116	12A2p6	cell line	sgMsh2	34794116	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	108	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon4:c.T420A:p.D140E	5qB2	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999988	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	34966123	12A2p6	cell line	sgMsh2	34966123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	159	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1249G:p.T417A	5qB2	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	9.86E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	34966139	12A2p6	cell line	sgMsh2	34966139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	164	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1265G:p.D422G	5qB2	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	35280496	12A2p6	cell line	sgMsh2	35280496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	0	0	NA	exonic	Adra2c	nonsynonymous SNV	Adra2c:NM_007418:exon1:c.T611C:p.L204P	5qB2	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	36809005	12A2p6	cell line	sgMsh2	36809005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon17:c.A2843G:p.K948R	5qB3	chr5-24319705-37739562	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	41832359	12A2p6	cell line	sgMsh2	41832359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon4:c.T1020C:p.T340T,Bod1l:NM_001310601:exon4:c.T1020C:p.T340T"	5qB3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	51472896	12A2p6	cell line	sgMsh2	51472896	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	225	0	0	NA	exonic	Ppargc1a	synonymous SNV	Ppargc1a:NM_008904:exon9:c.C1878A:p.P626P	5qC1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	57720612	12A2p6	cell line	sgMsh2	57720612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	105	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310606:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310608:exon1:c.T1508C:p.V503A,Pcdh7:NM_018764:exon1:c.T1508C:p.V503A"	5qC1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999983	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	62636013	12A2p6	cell line	sgMsh2	62636013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	72	0	0	NA	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon26:c.T4089C:p.N1363N	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999591	TAT	synonymous	T	5	TTTTT	NA
SSC_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	186	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.65E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	64103865	12A2p6	cell line	sgMsh2	64103865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	128	0	0	NA	exonic	Pgm2	nonsynonymous SNV	"Pgm2:NM_025700:exon6:c.G701T:p.G234V,Pgm2:NM_001356964:exon7:c.G515T:p.G172V"	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	GGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	65141360	12A2p6	cell line	sgMsh2	65141360	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	104	0	0	NA	exonic	Klhl5	frameshift deletion	"Klhl5:NM_001347355:exon2:c.61delA:p.M23Wfs*4,Klhl5:NM_001359401:exon2:c.481delA:p.M163Wfs*4,Klhl5:NM_175174:exon2:c.481delA:p.M163Wfs*4"	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr5	65416892	12A2p6	cell line	sgMsh2	65416892	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	151	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon11:c.C1307T:p.A436V	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.02E-08	GGC	nonsynonymous	GGCT	8	GGCTGGCT	NA
SSC_p20	chr5	65427529	12A2p6	cell line	sgMsh2	65427529	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	163	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon2:c.G49A:p.G17R	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	7.01E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	65628113	12A2p6	cell line	sgMsh2	65628113	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	94	0	0	NA	exonic	Pds5a	synonymous SNV	Pds5a:NM_001081321:exon24:c.T2649C:p.D883D	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.371497453	2	0.8465552	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	66024963	12A2p6	cell line	sgMsh2	66024963	T	-	Deletion	Mutect2;Vardict	2	0.047	109	0	0	NA	exonic	Rbm47	frameshift deletion	"Rbm47:NM_139065:exon5:c.1326delA:p.K442Nfs*24,Rbm47:NM_178446:exon5:c.1326delA:p.K442Nfs*24,Rbm47:NM_001127382:exon6:c.1326delA:p.K442Nfs*24"	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.277148893	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr5	66684780	12A2p6	cell line	sgMsh2	66684780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	101	0	0	NA	exonic	Uchl1	synonymous SNV	Uchl1:NM_011670:exon8:c.A534T:p.R178R	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999975	GAA	synonymous	NA	NA	NA	NA
SSC_p20	chr5	67342145	12A2p6	cell line	sgMsh2	67342145	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	151	0	0	NA	exonic	Slc30a9	synonymous SNV	"Slc30a9:NM_001310629:exon10:c.T885C:p.G295G,Slc30a9:NM_178651:exon11:c.T945C:p.G315G"	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.342013528	3	0.6486227	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	149	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	69559600	12A2p6	cell line	sgMsh2	69559600	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	183	0	0	NA	exonic	Guf1	nonsynonymous SNV	"Guf1:NM_001310631:exon5:c.G504T:p.Q168H,Guf1:NM_172711:exon5:c.G504T:p.Q168H"	5qC3.1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.86E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	72108379	12A2p6	cell line	sgMsh2	72108379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	137	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon6:c.A616G:p.I206V,Gabrb1:NM_001370968:exon7:c.A517G:p.I173V"	5qC3.2	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	72763770	12A2p6	cell line	sgMsh2	72763770	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	51	0	0	NA	exonic	Tec	nonsynonymous SNV	"Tec:NM_001113461:exon14:c.C1195T:p.H399Y,Tec:NM_001113464:exon14:c.C1261T:p.H421Y,Tec:NM_013689:exon14:c.C952T:p.H318Y,Tec:NM_001113460:exon15:c.C1261T:p.H421Y"	5qC3.2	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996867	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	73520210	12A2p6	cell line	sgMsh2	73520210	A	-	Deletion	Strelka2;Vardict	2	0.2535	71	0	0	NA	exonic	Dcun1d4	frameshift deletion	"Dcun1d4:NM_001190733:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_178896:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_001190734:exon5:c.273delA:p.S94Afs*14"	5qC3.3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
SSC_p20	chr5	73534610	12A2p6	cell line	sgMsh2	73534610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	170	0	0	NA	exonic	Dcun1d4	nonsynonymous SNV	"Dcun1d4:NM_001190733:exon7:c.T419C:p.V140A,Dcun1d4:NM_178896:exon7:c.T419C:p.V140A,Dcun1d4:NM_001190734:exon8:c.T461C:p.V154A"	5qC3.3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999956	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	75964693	12A2p6	cell line	sgMsh2	75964693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	151	0	0	NA	exonic	Kdr	synonymous SNV	"Kdr:NM_001363216:exon9:c.T1143C:p.V381V,Kdr:NM_010612:exon9:c.T1143C:p.V381V"	5qC3.3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	CAA	synonymous	NA	NA	NA	NA
SSC_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.4	60	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
SSC_p20	chr5	81329783	12A2p6	cell line	sgMsh2	81329783	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	13	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001347368:exon4:c.G82A:p.A28T,Adgrl3:NM_001359830:exon4:c.G82A:p.A28T,Adgrl3:NM_001359831:exon4:c.G82A:p.A28T,Adgrl3:NM_001347367:exon5:c.G82A:p.A28T,Adgrl3:NM_001347369:exon5:c.G82A:p.A28T,Adgrl3:NM_001359828:exon5:c.G82A:p.A28T,Adgrl3:NM_001359832:exon5:c.G82A:p.A28T,Adgrl3:NM_001359834:exon5:c.G82A:p.A28T,Adgrl3:NM_198702:exon5:c.G82A:p.A28T"	5qD	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9876418	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	81766205	12A2p6	cell line	sgMsh2	81766205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	116	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon21:c.T3413C:p.I1138T,Adgrl3:NM_001347371:exon22:c.T3428C:p.I1143T,Adgrl3:NM_001347368:exon23:c.T3632C:p.I1211T,Adgrl3:NM_001359826:exon23:c.T2942C:p.I981T,Adgrl3:NM_001359832:exon23:c.T3617C:p.I1206T,Adgrl3:NM_001359833:exon23:c.T3452C:p.I1151T,Adgrl3:NM_001347369:exon24:c.T3632C:p.I1211T,Adgrl3:NM_001359830:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359831:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359834:exon24:c.T3644C:p.I1215T,Adgrl3:NM_001347367:exon25:c.T3659C:p.I1220T,Adgrl3:NM_001359828:exon25:c.T3659C:p.I1220T,Adgrl3:NM_198702:exon25:c.T3659C:p.I1220T"	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	83294647	12A2p6	cell line	sgMsh2	83294647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon6:c.T578C:p.I193T	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998691	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	84331605	12A2p6	cell line	sgMsh2	84331605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	135	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon3:c.C539A:p.A180D	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	86118082	12A2p6	cell line	sgMsh2	86118082	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	125	0	0	NA	exonic	Uba6	stopgain	Uba6:NM_172712:exon32:c.G2965T:p.G989X	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	104	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	86926248	12A2p6	cell line	sgMsh2	86926248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	130	0	0	NA	exonic	Ugt2b1	nonsynonymous SNV	Ugt2b1:NM_152811:exon1:c.A251C:p.D84A	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	87254427	12A2p6	cell line	sgMsh2	87254427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	239	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A344C:p.N115T	5qE1	chr5-37820990-87674558	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	132	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	87822308	12A2p6	cell line	sgMsh2	87822308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	136	0	0	NA	exonic	Csn1s2b	nonsynonymous SNV	"Csn1s2b:NM_001301335:exon10:c.T379C:p.S127P,Csn1s2b:NM_001301334:exon11:c.T397C:p.S133P,Csn1s2b:NM_009973:exon11:c.T412C:p.S138P"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	87843547	12A2p6	cell line	sgMsh2	87843547	T	-	Deletion	Strelka2;Vardict	2	0.2167	120	0	0	NA	exonic	Prr27	frameshift deletion	"Prr27:NM_028648:exon4:c.993delT:p.Y334Tfs*4,Prr27:NM_001163551:exon5:c.1017delT:p.Y342Tfs*4"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr5	87979950	12A2p6	cell line	sgMsh2	87979950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	209	0	0	NA	exonic	Cabs1	synonymous SNV	Cabs1:NM_027631:exon1:c.A459G:p.E153E	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	1.99E-08	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	88328658	12A2p6	cell line	sgMsh2	88328658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	141	0	0	NA	exonic	Prol1	synonymous SNV	Prol1:NM_008644:exon3:c.G906A:p.K302K	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9999867	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	75	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999694	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.549	79	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999793	AAC	synonymous	A	5	AAAAA	NA
SSC_p20	chr5	90606874	12A2p6	cell line	sgMsh2	90606874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	112	0	0	NA	exonic	Rassf6	nonsynonymous SNV	"Rassf6:NM_001310656:exon7:c.T544C:p.S182P,Rassf6:NM_028478:exon7:c.T583C:p.S195P"	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	GAT	nonsynonymous	GATG	8	GATGGATG	NA
SSC_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	146	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	91594162	12A2p6	cell line	sgMsh2	91594162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	138	0	0	NA	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.C388T:p.P130S	5qE2	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	318	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	92627441	12A2p6	cell line	sgMsh2	92627441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	85	0	0	NA	exonic	Ccdc158	synonymous SNV	"Ccdc158:NM_001360018:exon21:c.T2916C:p.S972S,Ccdc158:NM_177230:exon21:c.T2904C:p.S968S"	5qE2	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	92941473	12A2p6	cell line	sgMsh2	92941473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	94	0	0	NA	exonic	Shroom3	nonsynonymous SNV	"Shroom3:NM_001077595:exon4:c.A1556G:p.E519G,Shroom3:NM_001077596:exon4:c.A1556G:p.E519G,Shroom3:NM_015756:exon5:c.A2081G:p.E694G"	5qE2	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999952	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	96534932	12A2p6	cell line	sgMsh2	96534932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	70	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon4:c.A287G:p.H96R	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	96555302	12A2p6	cell line	sgMsh2	96555302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	67	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon9:c.A923G:p.D308G	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	96642604	12A2p6	cell line	sgMsh2	96642604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	113	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon23:c.T2836C:p.Y946H	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	96700257	12A2p6	cell line	sgMsh2	96700257	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	100	0	0	NA	exonic	Fras1	frameshift deletion	Fras1:NM_175473:exon39:c.5325delG:p.D1777Ifs*99	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr5	96758230	12A2p6	cell line	sgMsh2	96758230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	52	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon62:c.A9492G:p.P3164P	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997157	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	96776630	12A2p6	cell line	sgMsh2	96776630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	122	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon71:c.A10929C:p.I3643I	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9983831	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	97455677	12A2p6	cell line	sgMsh2	97455677	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	231	0	0	NA	exonic	Gk2	nonsynonymous SNV	Gk2:NM_010294:exon1:c.T1301G:p.L434R	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	98275270	12A2p6	cell line	sgMsh2	98275270	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	58	0	0	NA	exonic	Fgf5	synonymous SNV	Fgf5:NM_010203:exon3:c.C513A:p.T171T	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998411	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	98872157	12A2p6	cell line	sgMsh2	98872157	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	123	0	0	NA	exonic	Bmp3	nonsynonymous SNV	"Bmp3:NM_001310677:exon2:c.A438C:p.E146D,Bmp3:NM_173404:exon2:c.A438C:p.E146D"	5qE3	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	113	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	100806870	12A2p6	cell line	sgMsh2	100806870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	51	0	0	NA	exonic	Abraxas1	synonymous SNV	Abraxas1:NM_172405:exon8:c.A702G:p.E234E	5qE4	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996867	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	101917543	12A2p6	cell line	sgMsh2	101917543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	63	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon23:c.C3758T:p.P1253L	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	104480272	12A2p6	cell line	sgMsh2	104480272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	113	0	0	NA	exonic	Pkd2	nonsynonymous SNV	Pkd2:NM_008861:exon5:c.T1211C:p.L404P	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	104483070	12A2p6	cell line	sgMsh2	104483070	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	143	0	0	NA	exonic	Pkd2	stopgain	Pkd2:NM_008861:exon6:c.G1359A:p.W453X	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.218181044	3	0.9999978	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	104968246	12A2p6	cell line	sgMsh2	104968246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	97	0	0	NA	exonic	Abcg3	nonsynonymous SNV	Abcg3:NM_030239:exon7:c.T721C:p.S241P	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	105236087	12A2p6	cell line	sgMsh2	105236087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	314	0	0	NA	exonic	Gbp10	synonymous SNV	Gbp10:NM_001039646:exon2:c.T48C:p.N16N	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	105606595	12A2p6	cell line	sgMsh2	105606595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	168	0	0	NA	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A235G:p.T79A	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	4.70E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	106636730	12A2p6	cell line	sgMsh2	106636730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	209	0	0	NA	exonic	Zfp644	synonymous SNV	"Zfp644:NM_001363323:exon2:c.T1875C:p.S625S,Zfp644:NM_001363320:exon3:c.T1950C:p.S650S,Zfp644:NM_001363321:exon3:c.T1950C:p.S650S,Zfp644:NM_001363322:exon3:c.T1917C:p.S639S,Zfp644:NM_026856:exon3:c.T1950C:p.S650S,Zfp644:NM_001363319:exon4:c.T1950C:p.S650S,Zfp644:NM_001363318:exon6:c.T1950C:p.S650S"	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.07E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	107485797	12A2p6	cell line	sgMsh2	107485797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon7:c.T871A:p.L291M	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.22E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	107497764	12A2p6	cell line	sgMsh2	107497764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	132	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon12:c.C1484T:p.A495V	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	107507151	12A2p6	cell line	sgMsh2	107507151	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	0	0	NA	exonic	Btbd8	stopgain	"Btbd8:NM_001384112:exon6:c.C1279T:p.R427X,Btbd8:NM_001378266:exon17:c.C2815T:p.R939X"	5qE5	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999952	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	107901925	12A2p6	cell line	sgMsh2	107901925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	148	0	0	NA	exonic	Rpl5	nonsynonymous SNV	Rpl5:NM_016980:exon2:c.T59C:p.F20S	5qF	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	67	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9986871	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	108745687	12A2p6	cell line	sgMsh2	108745687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	130	0	0	NA	exonic	Rnf212	nonsynonymous SNV	Rnf212:NM_001362887:exon9:c.T548C:p.I183T	5qF	chr5-87678697-108786463	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	109363764	12A2p6	cell line	sgMsh2	109363764	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.019	528	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon6:c.T1836C:p.T612T,Vmn2r16:NM_001385189:exon6:c.T1833C:p.T611T"	5qF	chr5-108794879-110007284	7	4	3	0.9	5.307106465	RARE KARYOTYPE	1	0.112038914	3	1	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	109452967	12A2p6	cell line	sgMsh2	109452967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	680	0	0	NA	exonic	Vmn2r17	synonymous SNV	"Vmn2r17:NM_001104628:exon6:c.T2130C:p.C710C,Vmn2r17:NM_001385190:exon6:c.T2127C:p.C709C"	5qF	chr5-108794879-110007284	7	4	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	110788235	12A2p6	cell line	sgMsh2	110788235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	39	0	0	NA	exonic	Ulk1	nonsynonymous SNV	"Ulk1:NM_001347394:exon23:c.T2407A:p.C803S,Ulk1:NM_009469:exon23:c.T2389A:p.C797S"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9989976	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	110866346	12A2p6	cell line	sgMsh2	110866346	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	71	0	0	NA	exonic	Chek2	synonymous SNV	"Chek2:NM_001363308:exon10:c.T474G:p.P158P,Chek2:NM_016681:exon11:c.T1191G:p.P397P"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999955	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	113577320	12A2p6	cell line	sgMsh2	113577320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	61	0	0	NA	exonic	Wscd2	nonsynonymous SNV	Wscd2:NM_177292:exon7:c.A1220G:p.H407R	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	114248224	12A2p6	cell line	sgMsh2	114248224	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	29	0	0	NA	exonic	Acacb	nonsynonymous SNV	Acacb:NM_133904:exon49:c.A6818G:p.E2273G	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9973605	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	114450746	12A2p6	cell line	sgMsh2	114450746	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	27	0	0	NA	exonic	Mvk	frameshift deletion	"Mvk:NM_001306205:exon5:c.448delC:p.A153Qfs*17,Mvk:NM_023556:exon5:c.412delC:p.A141Qfs*17"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr5	114804258	12A2p6	cell line	sgMsh2	114804258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	56	0	0	NA	exonic	Ankrd13a	nonsynonymous SNV	"Ankrd13a:NM_001378897:exon15:c.T1604C:p.M535T,Ankrd13a:NM_026718:exon15:c.T1601C:p.M534T"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	114950753	12A2p6	cell line	sgMsh2	114950753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	60	0	0	NA	exonic	Hnf1a	nonsynonymous SNV	Hnf1a:NM_009327:exon9:c.A1703T:p.Q568L	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998691	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
SSC_p20	chr5	115571482	12A2p6	cell line	sgMsh2	115571482	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	140	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon2:c.G92T:p.S31I	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	94	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	116014936	12A2p6	cell line	sgMsh2	116014936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	exonic	Prkab1	nonsynonymous SNV	Prkab1:NM_031869:exon6:c.A713G:p.H238R	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9999072	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	81	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	0.999934	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	117252547	12A2p6	cell line	sgMsh2	117252547	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	29	0	0	NA	exonic	Taok3	nonsynonymous SNV	"Taok3:NM_001081308:exon15:c.G1572T:p.K524N,Taok3:NM_001199685:exon16:c.G1572T:p.K524N,Taok3:NM_183306:exon16:c.G1572T:p.K524N"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9973605	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	117371125	12A2p6	cell line	sgMsh2	117371125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	113	0	0	NA	exonic	Wsb2	nonsynonymous SNV	Wsb2:NM_021539:exon4:c.T464C:p.V155A	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	118201149	12A2p6	cell line	sgMsh2	118201149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	96	0	0	NA	exonic	Rnft2	nonsynonymous SNV	"Rnft2:NM_001109902:exon10:c.A1202G:p.Q401R,Rnft2:NM_172998:exon11:c.A1205G:p.Q402R"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	120537866	12A2p6	cell line	sgMsh2	120537866	G	T	SNV	Mutect2;Vardict	2	0.047	86	0	0	NA	exonic	Tpcn1	synonymous SNV	Tpcn1:NM_145853:exon26:c.C2202A:p.T734T	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.277148893	3	0.9838613	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	121534348	12A2p6	cell line	sgMsh2	121534348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	exonic	Mapkapk5	nonsynonymous SNV	Mapkapk5:NM_010765:exon7:c.A566G:p.Y189C	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	121873710	12A2p6	cell line	sgMsh2	121873710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	56	0	0	NA	exonic	Cux2	nonsynonymous SNV	"Cux2:NM_001312908:exon16:c.T1661C:p.L554P,Cux2:NM_007804:exon16:c.T1661C:p.L554P"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	0.9997216	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	122461781	12A2p6	cell line	sgMsh2	122461781	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	166	0	0	NA	exonic	Atp2a2	frameshift deletion	"Atp2a2:NM_001110140:exon13:c.1546delG:p.A516Lfs*20,Atp2a2:NM_009722:exon13:c.1546delG:p.A516Lfs*20"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr5	123143390	12A2p6	cell line	sgMsh2	123143390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	80	0	0	NA	exonic	Setd1b	nonsynonymous SNV	Setd1b:NM_001040398:exon3:c.A206G:p.D69G	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999812	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	123583549	12A2p6	cell line	sgMsh2	123583549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	exonic	Clip1	nonsynonymous SNV	"Clip1:NM_001359222:exon19:c.A3251G:p.D1084G,Clip1:NM_001291229:exon20:c.A3368G:p.D1123G,Clip1:NM_001359220:exon20:c.A3584G:p.D1195G,Clip1:NM_001359221:exon20:c.A3356G:p.D1119G,Clip1:NM_019765:exon20:c.A3596G:p.D1199G,Clip1:NM_001347468:exon21:c.A3377G:p.D1126G"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999591	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	153	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	70	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	123803679	12A2p6	cell line	sgMsh2	123803679	A	-	Deletion	Mutect2;Vardict	2	0.041	206	0	0	NA	exonic	Kntc1	frameshift deletion	Kntc1:NM_001042421:exon51:c.5435delA:p.I1814Sfs*65	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.241768183	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr5	123998901	12A2p6	cell line	sgMsh2	123998901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	39	0	0	NA	exonic	Hip1r	nonsynonymous SNV	Hip1r:NM_145070:exon19:c.A1931C:p.D644A	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9989976	GAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr5	124292354	12A2p6	cell line	sgMsh2	124292354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	143	0	0	NA	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon10:c.T1778G:p.L593R,Mphosph9:NM_001277867:exon11:c.T1868G:p.L623R"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	124387551	12A2p6	cell line	sgMsh2	124387551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	214	0	0	NA	exonic	Sbno1	nonsynonymous SNV	"Sbno1:NM_001081203:exon22:c.T2968C:p.Y990H,Sbno1:NM_001359978:exon22:c.T2968C:p.Y990H,Sbno1:NM_001359979:exon22:c.T2965C:p.Y989H"	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	124803824	12A2p6	cell line	sgMsh2	124803824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	132	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon50:c.A8483G:p.H2828R	5qF	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	0.9999886	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	125415139	12A2p6	cell line	sgMsh2	125415139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	118	0	0	NA	exonic	Dhx37	nonsynonymous SNV	Dhx37:NM_203319:exon27:c.T3395C:p.L1132P	5qG1.1	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	125416355	12A2p6	cell line	sgMsh2	125416355	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	66	0	0	NA	exonic	Dhx37	synonymous SNV	Dhx37:NM_203319:exon23:c.G3045A:p.A1015A	5qG1.1	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9802698	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	125778827	12A2p6	cell line	sgMsh2	125778827	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.217	50	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon6:c.T1622C:p.V541A	5qG1.1	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	127604164	12A2p6	cell line	sgMsh2	127604164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	0	0	NA	exonic	Slc15a4	nonsynonymous SNV	Slc15a4:NM_133895:exon4:c.A1039C:p.S347R	5qG1.2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	127784717	12A2p6	cell line	sgMsh2	127784717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	132	0	0	NA	exonic	Tmem132d	nonsynonymous SNV	Tmem132d:NM_172885:exon9:c.A2339G:p.K780R	5qG1.2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	129507144	12A2p6	cell line	sgMsh2	129507144	A	-	Deletion	Strelka2;Vardict	2	0.25	52	0	0	NA	exonic	Sfswap	frameshift deletion	"Sfswap:NM_001359952:exon4:c.143delA:p.N50Mfs*16,Sfswap:NM_001378915:exon4:c.521delA:p.N176Mfs*16,Sfswap:NM_001378916:exon4:c.521delA:p.N176Mfs*16,Sfswap:NM_001378917:exon4:c.521delA:p.N176Mfs*16,Sfswap:NM_172276:exon4:c.521delA:p.N176Mfs*16"	5qG1.3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr5	129595427	12A2p6	cell line	sgMsh2	129595427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	114	0	0	NA	exonic	Mmp17	nonsynonymous SNV	Mmp17:NM_011846:exon4:c.T442G:p.S148A	5qG1.3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999993	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	129908713	12A2p6	cell line	sgMsh2	129908713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	20	0	0	NA	exonic	Nupr1l	nonsynonymous SNV	"Nupr1l:NM_001359308:exon1:c.A122G:p.Y41C,Nupr1l:NM_026916:exon1:c.A122G:p.Y41C"	5qG1.3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9937046	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
SSC_p20	chr5	130822927	12A2p6	cell line	sgMsh2	130822927	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	69	0	0	NA	exonic	Caln1	nonsynonymous SNV	"Caln1:NM_021371:exon5:c.T430G:p.F144V,Caln1:NM_181045:exon6:c.T556G:p.F186V"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9997941	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	130877774	12A2p6	cell line	sgMsh2	130877774	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	67	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1555G:p.T519A	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	GTG	nonsynonymous	GTG	8	GTGGTGGT	NA
SSC_p20	chr5	134196572	12A2p6	cell line	sgMsh2	134196572	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	128	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon5:c.A500T:p.E167V,Gtf2ird2:NM_053266:exon5:c.A500T:p.E167V"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	78	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	148	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	134688355	12A2p6	cell line	sgMsh2	134688355	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	42	0	0	NA	exonic	Limk1	frameshift deletion	Limk1:NM_010717:exon1:c.41delG:p.R14Lfs*27	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.71351098	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC_p20	chr5	134915130	12A2p6	cell line	sgMsh2	134915130	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	176	0	0	NA	exonic	Cldn13	nonsynonymous SNV	Cldn13:NM_020504:exon1:c.A200G:p.D67G	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9999894	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	135217642	12A2p6	cell line	sgMsh2	135217642	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	160	0	0	NA	exonic	Baz1b	frameshift deletion	Baz1b:NM_011714:exon7:c.1944delT:p.L650Cfs*2	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr5	135854387	12A2p6	cell line	sgMsh2	135854387	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	87	0	0	NA	exonic	Srrm3	synonymous SNV	Srrm3:NM_021403:exon7:c.C595T:p.L199L	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.978866304	1	0.999979	CCT	synonymous	C	5	CCCCC	NA
SSC_p20	chr5	135911218	12A2p6	cell line	sgMsh2	135911218	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.341	90	0	0	NA	exonic	Ywhag	frameshift deletion	Ywhag:NM_018871:exon2:c.521delG:p.G174Afs*37	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	192	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.36E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	136064128	12A2p6	cell line	sgMsh2	136064128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	118	0	0	NA	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A707G:p.H236R,Upk3bl:NM_027158:exon6:c.A710G:p.H237R"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	137328533	12A2p6	cell line	sgMsh2	137328533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	71	0	0	NA	exonic	Slc12a9	synonymous SNV	"Slc12a9:NM_031406:exon5:c.T661C:p.L221L,Slc12a9:NM_001359611:exon6:c.T661C:p.L221L"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	137400012	12A2p6	cell line	sgMsh2	137400012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	284	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon66:c.T12757C:p.C4253R	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	137484567	12A2p6	cell line	sgMsh2	137484567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	140	0	0	NA	exonic	Epo	synonymous SNV	"Epo:NM_001312875:exon3:c.T162C:p.G54G,Epo:NM_007942:exon3:c.T162C:p.G54G"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	137522427	12A2p6	cell line	sgMsh2	137522427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	23	0	0	NA	exonic	Gigyf1	nonsynonymous SNV	Gigyf1:NM_031408:exon12:c.A1346C:p.E449A	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9952866	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
SSC_p20	chr5	137607443	12A2p6	cell line	sgMsh2	137607443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	104	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon5:c.G687A:p.K229K	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999982	TCT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	137618832	12A2p6	cell line	sgMsh2	137618832	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	36	0	0	NA	exonic	Fbxo24	frameshift deletion	Fbxo24:NM_027708:exon7:c.992delG:p.G331Efs*51	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr5	138166740	12A2p6	cell line	sgMsh2	138166740	T	C	SNV	Mutect2;Vardict	2	0.037	142	0	0	NA	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon12:c.A1301G:p.H434R,Mcm7:NM_001356577:exon12:c.A1301G:p.H434R,Mcm7:NM_008568:exon12:c.A1622G:p.H541R"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.218181044	3	0.9999975	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	138275565	12A2p6	cell line	sgMsh2	138275565	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	109	0	0	NA	exonic	Gpc2	nonsynonymous SNV	Gpc2:NM_172412:exon9:c.A1370G:p.D457G	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.383291022	2	0.9439887	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	138606340	12A2p6	cell line	sgMsh2	138606340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	82	0	0	NA	exonic	Zfp68	nonsynonymous SNV	"Zfp68:NM_001044747:exon5:c.T1606C:p.S536P,Zfp68:NM_001163797:exon6:c.T1720C:p.S574P,Zfp68:NM_013844:exon6:c.T1720C:p.S574P"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999845	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	139170174	12A2p6	cell line	sgMsh2	139170174	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	101	0	0	NA	exonic	Dnaaf5	nonsynonymous SNV	"Dnaaf5:NM_001081265:exon8:c.G1609A:p.A537T,Dnaaf5:NM_001363485:exon8:c.G724A:p.A242T"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.318426388	3	0.8766691	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	139223600	12A2p6	cell line	sgMsh2	139223600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	129	0	0	NA	exonic	Sun1	synonymous SNV	"Sun1:NM_001256118:exon2:c.T84C:p.S28S,Sun1:NM_001256115:exon3:c.T84C:p.S28S,Sun1:NM_001256116:exon3:c.T84C:p.S28S,Sun1:NM_001256117:exon3:c.T84C:p.S28S,Sun1:NM_001359494:exon3:c.T84C:p.S28S,Sun1:NM_001359496:exon3:c.T84C:p.S28S,Sun1:NM_024451:exon3:c.T84C:p.S28S"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	112	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	139706886	12A2p6	cell line	sgMsh2	139706886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	73	0	0	NA	exonic	Micall2	nonsynonymous SNV	Micall2:NM_174850:exon17:c.T2980G:p.S994A	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.967072734	1	0.9998958	GAC	nonsynonymous	GGACTT	12	GGACTTGGACTT	NA
SSC_p20	chr5	139765044	12A2p6	cell line	sgMsh2	139765044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	27	0	0	NA	exonic	Ints1	nonsynonymous SNV	Ints1:NM_026748:exon18:c.A2603G:p.Q868R	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9967974	CTG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr5	139774522	12A2p6	cell line	sgMsh2	139774522	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	94	0	0	NA	exonic	Ints1	nonsynonymous SNV	Ints1:NM_026748:exon2:c.T196G:p.S66A	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.6823117	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	138	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	139972625	12A2p6	cell line	sgMsh2	139972625	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.181	105	0	0	NA	exonic	Elfn1	frameshift insertion	"Elfn1:NM_001384186:exon2:c.1384dupA:p.T464Nfs*5,Elfn1:NM_175522:exon2:c.1384dupA:p.T464Nfs*5"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
SSC_p20	chr5	140193962	12A2p6	cell line	sgMsh2	140193962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	124	0	0	NA	exonic	Mad1l1	synonymous SNV	"Mad1l1:NM_001359025:exon11:c.T1170C:p.H390H,Mad1l1:NM_010752:exon11:c.T1170C:p.H390H"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr5	140427451	12A2p6	cell line	sgMsh2	140427451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	88	0	0	NA	exonic	Eif3b	synonymous SNV	Eif3b:NM_133916:exon6:c.C1008A:p.T336T	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	CCT	synonymous	TACC	9	TACCTACCT	NA
SSC_p20	chr5	140712706	12A2p6	cell line	sgMsh2	140712706	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	104	0	0	NA	exonic	Brat1	frameshift deletion	"Brat1:NM_001276287:exon5:c.767delC:p.Q258Rfs*5,Brat1:NM_181066:exon5:c.632delC:p.Q213Rfs*5"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr5	145345370	12A2p6	cell line	sgMsh2	145345370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	333	0	0	NA	exonic	Cyp3a57	synonymous SNV	Cyp3a57:NM_001100180:exon1:c.T24C:p.S8S	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr5	145570402	12A2p6	cell line	sgMsh2	145570402	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	81	0	0	NA	exonic	Cyp3a41a;Cyp3a41b	nonsynonymous SNV	"Cyp3a41b:NM_001105159:exon8:c.A727G:p.K243E,Cyp3a41a:NM_017396:exon8:c.A727G:p.K243E"	5qG2	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999829	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	205	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.10E-09	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	146583706	12A2p6	cell line	sgMsh2	146583706	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	112	0	0	NA	exonic	Gpr12	synonymous SNV	"Gpr12:NM_008151:exon1:c.T405G:p.T135T,Gpr12:NM_001010941:exon2:c.T405G:p.T135T,Gpr12:NM_001359055:exon2:c.T405G:p.T135T,Gpr12:NM_001359056:exon2:c.T405G:p.T135T,Gpr12:NM_001359057:exon2:c.T405G:p.T135T"	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr5	149194232	12A2p6	cell line	sgMsh2	149194232	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	122	0	0	NA	exonic	Uspl1	synonymous SNV	"Uspl1:NM_001115150:exon3:c.A27G:p.P9P,Uspl1:NM_001115151:exon3:c.A27G:p.P9P,Uspl1:NM_001013378:exon4:c.A624G:p.P208P,Uspl1:NM_001115149:exon4:c.A624G:p.P208P,Uspl1:NM_001286824:exon4:c.A582G:p.P194P,Uspl1:NM_001286825:exon4:c.A27G:p.P9P,Uspl1:NM_001359956:exon4:c.A27G:p.P9P,Uspl1:NM_001115153:exon5:c.A624G:p.P208P,Uspl1:NM_001359957:exon5:c.A624G:p.P208P"	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.937588809	1	0.9999916	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr5	149593124	12A2p6	cell line	sgMsh2	149593124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	120	0	0	NA	exonic	Wdr95	nonsynonymous SNV	Wdr95:NM_029440:exon16:c.T1003C:p.F335L	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	151561858	12A2p6	cell line	sgMsh2	151561858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	403	0	0	NA	exonic	Vmn2r18	nonsynonymous SNV	"Vmn2r18:NM_001102582:exon5:c.A2170G:p.S724G,Vmn2r18:NM_001385214:exon6:c.A2395G:p.S799G"	5qG3	chr5-110099887-151647482	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.34	90	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
SSC_p20	chr6	3375329	12A2p6	cell line	sgMsh2	3375329	A	G	SNV	Mutect2;Vardict	2	0.029	239	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.T1931C:p.M644T	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.171006764	3	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	4537429	12A2p6	cell line	sgMsh2	4537429	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	169	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon48:c.G3257A:p.R1086H	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.742994905	1	0.6996803	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	5966767	12A2p6	cell line	sgMsh2	5966767	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	272	0	0	NA	exonic	Dync1i1	nonsynonymous SNV	"Dync1i1:NM_001191023:exon11:c.C1172T:p.T391I,Dync1i1:NM_001191025:exon11:c.C1121T:p.T374I,Dync1i1:NM_001191027:exon11:c.C1088T:p.T363I,Dync1i1:NM_001191026:exon12:c.C1148T:p.T383I,Dync1i1:NM_010063:exon12:c.C1181T:p.T394I"	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.436362087	2	0.9999999	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	198	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.20E-09	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	7685200	12A2p6	cell line	sgMsh2	7685200	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	117	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T456A:p.D152E	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9955069	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	8013007	12A2p6	cell line	sgMsh2	8013007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	158	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon33:c.C3044A:p.P1015H	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	8176324	12A2p6	cell line	sgMsh2	8176324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	131	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon2:c.T32C:p.L11P	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	128	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr6	14755004	12A2p6	cell line	sgMsh2	14755004	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	190	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon1:c.A243C:p.E81D	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.999902	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	15379796	12A2p6	cell line	sgMsh2	15379796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	71	0	0	NA	exonic	Foxp2	synonymous SNV	"Foxp2:NM_001286607:exon6:c.A678G:p.Q226Q,Foxp2:NM_212435:exon6:c.A741G:p.Q247Q,Foxp2:NM_053242:exon8:c.A741G:p.Q247Q"	6qA1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999955	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	153	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.68E-08	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	156	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	245	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	1.23E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	184	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.78E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.798	175	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	5	1	1	2.88E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
SSC_p20	chr6	21969962	12A2p6	cell line	sgMsh2	21969962	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.138	199	0	0	NA	exonic	Ing3	frameshift deletion	"Ing3:NM_001311061:exon9:c.730delT:p.F244Lfs*27,Ing3:NM_023626:exon9:c.763delT:p.F255Lfs*27"	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr6	22291064	12A2p6	cell line	sgMsh2	22291064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	136	0	0	NA	exonic	Wnt16	nonsynonymous SNV	Wnt16:NM_053116:exon3:c.T490C:p.W164R	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.872724174	1	0.9998598	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	24570648	12A2p6	cell line	sgMsh2	24570648	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	191	0	0	NA	exonic	Asb15	stopgain	Asb15:NM_080847:exon10:c.C1624T:p.R542X	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.9999916	CCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	25669857	12A2p6	cell line	sgMsh2	25669857	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	155	0	0	NA	exonic	Gpr37	synonymous SNV	Gpr37:NM_010338:exon2:c.G987T:p.V329V	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9978514	CCA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	27363364	12A2p6	cell line	sgMsh2	27363364	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	199	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2151C:p.D717D,Grm8:NM_001361125:exon9:c.T2151C:p.D717D,Grm8:NM_008174:exon9:c.T2151C:p.D717D"	6qA3.1	chr6-3373003-28261057	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-09	GAT	synonymous	G	7	GGGGGGG	NA
SSC_p20	chr6	28668629	12A2p6	cell line	sgMsh2	28668629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	199	0	0	NA	exonic	Snd1	synonymous SNV	Snd1:NM_019776:exon12:c.T1314C:p.R438R	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	29433497	12A2p6	cell line	sgMsh2	29433497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	97	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon1:c.C39T:p.L13L,Flnc:NM_001311074:exon1:c.C39T:p.L13L"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	TCG	synonymous	CGGCCT	12	CGGCCTCGGCCT	NA
SSC_p20	chr6	29443464	12A2p6	cell line	sgMsh2	29443464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	111	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001081185:exon10:c.T1643C:p.V548A,Flnc:NM_001311074:exon10:c.T1643C:p.V548A"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	30119035	12A2p6	cell line	sgMsh2	30119035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	89	0	0	NA	exonic	Nrf1	synonymous SNV	"Nrf1:NM_001164226:exon10:c.A1152G:p.S384S,Nrf1:NM_001164227:exon10:c.A1152G:p.S384S,Nrf1:NM_001164228:exon10:c.A1152G:p.S384S,Nrf1:NM_001164230:exon10:c.A1152G:p.S384S,Nrf1:NM_001361692:exon10:c.A1152G:p.S384S,Nrf1:NM_001361694:exon10:c.A1152G:p.S384S,Nrf1:NM_001361695:exon10:c.A1152G:p.S384S,Nrf1:NM_010938:exon10:c.A1152G:p.S384S,Nrf1:NM_001164229:exon11:c.A1188G:p.S396S,Nrf1:NM_001361693:exon11:c.A1188G:p.S396S"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	30129339	12A2p6	cell line	sgMsh2	30129339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	exonic	Nrf1	nonsynonymous SNV	"Nrf1:NM_001164230:exon12:c.T1507C:p.C503R,Nrf1:NM_001164229:exon13:c.T1543C:p.C515R"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	30370390	12A2p6	cell line	sgMsh2	30370390	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	145	0	0	NA	exonic	Zc3hc1	stopgain	"Zc3hc1:NM_001311086:exon9:c.G1312T:p.E438X,Zc3hc1:NM_172735:exon9:c.G1312T:p.E438X"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.54E-08	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	30370456	12A2p6	cell line	sgMsh2	30370456	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	112	0	0	NA	exonic	Zc3hc1	nonsynonymous SNV	"Zc3hc1:NM_001311086:exon9:c.A1246C:p.S416R,Zc3hc1:NM_172735:exon9:c.A1246C:p.S416R"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	30519689	12A2p6	cell line	sgMsh2	30519689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	152	0	0	NA	exonic	Ssmem1	synonymous SNV	"Ssmem1:NM_027073:exon3:c.A372G:p.S124S,Ssmem1:NM_029373:exon3:c.A516G:p.S172S"	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9984494	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	30581677	12A2p6	cell line	sgMsh2	30581677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	198	0	0	NA	exonic	Cpa4	nonsynonymous SNV	Cpa4:NM_027926:exon7:c.A622G:p.T208A	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.684027055	2	0.9896726	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	140	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	32223949	12A2p6	cell line	sgMsh2	32223949	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	109	0	0	NA	exonic	Plxna4	synonymous SNV	Plxna4:NM_175750:exon10:c.C2289T:p.N763N	6qA3.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	1	0.9999635	TGT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	37927588	12A2p6	cell line	sgMsh2	37927588	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	156	0	0	NA	exonic	Trim24	nonsynonymous SNV	"Trim24:NM_001272064:exon6:c.C944T:p.T315I,Trim24:NM_001272076:exon6:c.C734T:p.T245I,Trim24:NM_145076:exon6:c.C944T:p.T315I"	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.28E-08	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	457	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	47	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.994667	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	39496984	12A2p6	cell line	sgMsh2	39496984	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	111	0	0	NA	exonic	Dennd2a	frameshift deletion	Dennd2a:NM_172477:exon5:c.1415delA:p.K472Rfs*6	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr6	40465892	12A2p6	cell line	sgMsh2	40465892	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	206	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon12:c.T1597G:p.S533A	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.09E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	40886048	12A2p6	cell line	sgMsh2	40886048	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	63	0	0	NA	exonic	Moxd2	nonsynonymous SNV	Moxd2:NM_139296:exon2:c.A323C:p.Q108P	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	40895680	12A2p6	cell line	sgMsh2	40895680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	135	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon5:c.A491G:p.E164G	6qB1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	231	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.01E-09	ACG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	42406480	12A2p6	cell line	sgMsh2	42406480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	exonic	Tas2r135	nonsynonymous SNV	Tas2r135:NM_199159:exon1:c.A952G:p.R318G	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	1	0.9999979	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42593742	12A2p6	cell line	sgMsh2	42593742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	253	0	0	NA	exonic	Tcaf3	nonsynonymous SNV	Tcaf3:NM_203396:exon2:c.A1075C:p.I359L	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.972969519	1	1.02E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42744168	12A2p6	cell line	sgMsh2	42744168	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	380	0	0	NA	exonic	Olfr453	nonsynonymous SNV	Olfr453:NM_001011799:exon1:c.C130A:p.L44I	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42912284	12A2p6	cell line	sgMsh2	42912284	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	206	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.G760T:p.A254S	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	1	1.21E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42927555	12A2p6	cell line	sgMsh2	42927555	A	G	SNV	Mutect2;MuSe;Vardict	3	0.091	233	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A323G:p.E108G	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.536607431	2	2.04E-09	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	247	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	43523898	12A2p6	cell line	sgMsh2	43523898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	113	0	0	NA	exonic	Tpk1	nonsynonymous SNV	"Tpk1:NM_001311111:exon5:c.T244C:p.Y82H,Tpk1:NM_013861:exon5:c.T244C:p.Y82H"	6qB2.1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.731201335	1	0.7363951	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48450153	12A2p6	cell line	sgMsh2	48450153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	134	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon6:c.A824G:p.E275G	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	116	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	GTC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	48472446	12A2p6	cell line	sgMsh2	48472446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	205	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon48:c.C7320T:p.A2440A	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	1	9.84E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	60	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9974349	AGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48498688	12A2p6	cell line	sgMsh2	48498688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	134	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon101:c.C15175T:p.L5059F	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	184	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.78E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48619665	12A2p6	cell line	sgMsh2	48619665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	87	0	0	NA	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A472G:p.R158G	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48620668	12A2p6	cell line	sgMsh2	48620668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	110	0	0	NA	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A1475G:p.H492R	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.860930604	1	0.9992656	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	48723979	12A2p6	cell line	sgMsh2	48723979	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	164	0	0	NA	exonic	Gimap7	synonymous SNV	Gimap7:NM_146167:exon2:c.C498A:p.A166A	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	6.45E-09	CCA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	48988514	12A2p6	cell line	sgMsh2	48988514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	256	0	0	NA	exonic	Svs1	synonymous SNV	Svs1:NM_172888:exon1:c.C1455T:p.G485G	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GCC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	49417382	12A2p6	cell line	sgMsh2	49417382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	248	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon7:c.C608T:p.P203L,Stk31:NM_029916:exon7:c.C677T:p.P226L"	6qB2.3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.731201335	2	0.8138552	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Strelka2;Vardict	2	0.0889	45	0	0	NA	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.524224183	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr6	54218559	12A2p6	cell line	sgMsh2	54218559	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	106	0	0	NA	exonic	Chn2	nonsynonymous SNV	Chn2:NM_001163640:exon5:c.A212C:p.E71A	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999884	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	54622225	12A2p6	cell line	sgMsh2	54622225	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	168	0	0	NA	exonic	Plekha8	nonsynonymous SNV	"Plekha8:NM_001001335:exon7:c.C608T:p.T203I,Plekha8:NM_001164361:exon7:c.C743T:p.T248I"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	55260598	12A2p6	cell line	sgMsh2	55260598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	186	0	0	NA	exonic	Mindy4	nonsynonymous SNV	"Mindy4:NM_001142781:exon7:c.A1157C:p.K386T,Mindy4:NM_177883:exon7:c.A1157C:p.K386T"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.625059206	2	0.9998509	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	55479287	12A2p6	cell line	sgMsh2	55479287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	92	0	0	NA	exonic	Adcyap1r1	nonsynonymous SNV	"Adcyap1r1:NM_001025372:exon9:c.T659C:p.F220S,Adcyap1r1:NM_007407:exon9:c.T659C:p.F220S"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.6641236	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	55978174	12A2p6	cell line	sgMsh2	55978174	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	86	0	0	NA	exonic	Itprid1	synonymous SNV	Itprid1:NM_001081665:exon14:c.T2766C:p.L922L	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.283045678	3	0.9771063	TTC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	56137366	12A2p6	cell line	sgMsh2	56137366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	141	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon13:c.T1534C:p.W512R,Pde1c:NM_001159956:exon13:c.T1450C:p.W484R,Pde1c:NM_001025568:exon14:c.T1561C:p.W521R,Pde1c:NM_001159953:exon14:c.T1561C:p.W521R,Pde1c:NM_001159957:exon14:c.T1477C:p.W493R,Pde1c:NM_001355475:exon14:c.T1561C:p.W521R,Pde1c:NM_001159955:exon15:c.T1561C:p.W521R,Pde1c:NM_001159960:exon15:c.T1561C:p.W521R,Pde1c:NM_011054:exon15:c.T1561C:p.W521R"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	56730679	12A2p6	cell line	sgMsh2	56730679	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	75	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon8:c.A608C:p.K203T	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	56779214	12A2p6	cell line	sgMsh2	56779214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	317	0	0	NA	exonic	Kbtbd2	synonymous SNV	"Kbtbd2:NM_001362213:exon3:c.T1362C:p.A454A,Kbtbd2:NM_001362209:exon4:c.T1536C:p.A512A,Kbtbd2:NM_001362210:exon4:c.T1536C:p.A512A,Kbtbd2:NM_001362211:exon4:c.T1536C:p.A512A,Kbtbd2:NM_001362212:exon4:c.T1536C:p.A512A,Kbtbd2:NM_145958:exon4:c.T1536C:p.A512A"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.554297786	2	1.00E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	56878066	12A2p6	cell line	sgMsh2	56878066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	162	0	0	NA	exonic	Fkbp9	synonymous SNV	Fkbp9:NM_012056:exon10:c.A1569G:p.T523T	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	56956940	12A2p6	cell line	sgMsh2	56956940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	509	0	0	NA	exonic	Vmn1r4	nonsynonymous SNV	Vmn1r4:NM_134176:exon1:c.T428G:p.F143C	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	57036601	12A2p6	cell line	sgMsh2	57036601	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	918	0	0	NA	exonic	Vmn1r8	synonymous SNV	Vmn1r8:NM_134187:exon1:c.T636C:p.L212L	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.642749561	2	1	TTC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	57071614	12A2p6	cell line	sgMsh2	57071614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	625	0	0	NA	exonic	Vmn1r9	nonsynonymous SNV	Vmn1r9:NM_134185:exon1:c.A673G:p.R225G	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.654543131	2	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	57210453	12A2p6	cell line	sgMsh2	57210453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	870	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.T596C:p.M199T	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	2	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	57432499	12A2p6	cell line	sgMsh2	57432499	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	422	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.A809T:p.Y270F	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	1	1	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	166	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9995083	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	57604075	12A2p6	cell line	sgMsh2	57604075	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	97	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon6:c.G759T:p.E253D	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9990685	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	58215263	12A2p6	cell line	sgMsh2	58215263	A	G	SNV	Mutect2;Vardict	2	0.013	571	0	0	NA	exonic	Vmn1r27	nonsynonymous SNV	Vmn1r27:NM_134436:exon1:c.T755C:p.V252A	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.076658204	3	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	202	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.79606597	1	0.9933634	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	65120012	12A2p6	cell line	sgMsh2	65120012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	146	0	0	NA	exonic	Hpgds	nonsynonymous SNV	Hpgds:NM_019455:exon6:c.A512G:p.Y171C	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9991551	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.09	364	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.530710647	2	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	67534925	12A2p6	cell line	sgMsh2	67534925	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.138	135	0	0	NA	exonic	Tacstd2	frameshift insertion	Tacstd2:NM_020047:exon1:c.781dupC:p.Q261Pfs*45	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	NA	NA	CTG	frameshift	G	5	GGGGG	1
SSC_p20	chr6	67535275	12A2p6	cell line	sgMsh2	67535275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	117	0	0	NA	exonic	Tacstd2	synonymous SNV	Tacstd2:NM_020047:exon1:c.A432C:p.R144R	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	2	0.7544256	TTC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	71134110	12A2p6	cell line	sgMsh2	71134110	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	118	0	0	NA	exonic	Thnsl2	nonsynonymous SNV	"Thnsl2:NM_001033929:exon5:c.T773G:p.V258G,Thnsl2:NM_178413:exon6:c.T773G:p.V258G"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	226	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	1	1.06E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	210	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.536607431	2	1.19E-08	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	100	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	1	0.999996	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	72555640	12A2p6	cell line	sgMsh2	72555640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	209	0	0	NA	exonic	Capg	nonsynonymous SNV	"Capg:NM_001042534:exon3:c.C187A:p.L63M,Capg:NM_001271395:exon3:c.C187A:p.L63M,Capg:NM_007599:exon3:c.C187A:p.L63M,Capg:NM_001271415:exon4:c.C187A:p.L63M"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	1	0.9505117	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	72788310	12A2p6	cell line	sgMsh2	72788310	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	98	0	0	NA	exonic	Tcf7l1	frameshift deletion	"Tcf7l1:NM_001079822:exon3:c.336delT:p.F112Lfs*11,Tcf7l1:NM_009332:exon3:c.336delT:p.F112Lfs*11"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.70171741	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	162	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9987554	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	73044721	12A2p6	cell line	sgMsh2	73044721	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	119	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon64:c.G10617T:p.M3539I	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.813756325	1	0.9941654	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	73083103	12A2p6	cell line	sgMsh2	73083103	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	152	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon52:c.C8497A:p.L2833I	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9998953	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	73138717	12A2p6	cell line	sgMsh2	73138717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	169	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon31:c.T4697C:p.F1566S	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.36E-09	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	73469521	12A2p6	cell line	sgMsh2	73469521	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	256	0	0	NA	exonic	4931417E11Rik	nonsynonymous SNV	4931417E11Rik:NM_025737:exon1:c.A44T:p.K15I	6qC1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr6	76882721	12A2p6	cell line	sgMsh2	76882721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	183	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon18:c.A2547G:p.A849A,Ctnna2:NM_009819:exon19:c.A2691G:p.A897A,Ctnna2:NM_145732:exon19:c.A2547G:p.A849A,Ctnna2:NM_001109764:exon20:c.A2691G:p.A897A"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.984763089	1	3.86E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	77244446	12A2p6	cell line	sgMsh2	77244446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	152	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.T885C:p.I295I,Lrrtm1:NM_028880:exon2:c.T885C:p.I295I"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	1	0.9995112	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	77244454	12A2p6	cell line	sgMsh2	77244454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	152	0	0	NA	exonic	Lrrtm1	nonsynonymous SNV	"Lrrtm1:NM_001362109:exon2:c.G893A:p.R298H,Lrrtm1:NM_028880:exon2:c.G893A:p.R298H"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9996674	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	78382333	12A2p6	cell line	sgMsh2	78382333	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	155	0	0	NA	exonic	Reg3a	synonymous SNV	Reg3a:NM_011259:exon4:c.G315A:p.G105G	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.972969519	1	0.9999999	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	268	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	83079167	12A2p6	cell line	sgMsh2	83079167	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	218	0	0	NA	exonic	Pcgf1	nonsynonymous SNV	Pcgf1:NM_197992:exon3:c.T215C:p.M72T	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.961175949	1	2.10E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	83675691	12A2p6	cell line	sgMsh2	83675691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	142	0	0	NA	exonic	Cd207	synonymous SNV	Cd207:NM_144943:exon3:c.T456C:p.S152S	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	GAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	111	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	84101948	12A2p6	cell line	sgMsh2	84101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	142	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon21:c.A2108G:p.D703G,Dysf:NM_001077694:exon22:c.A2198G:p.D733G,Dysf:NM_021469:exon22:c.A2201G:p.D734G"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	85256347	12A2p6	cell line	sgMsh2	85256347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	125	0	0	NA	exonic	Sfxn5	synonymous SNV	Sfxn5:NM_178639:exon10:c.A627G:p.A209A	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9999371	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	85830850	12A2p6	cell line	sgMsh2	85830850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	254	0	0	NA	exonic	Nat8	synonymous SNV	"Nat8:NM_001362060:exon2:c.C300A:p.S100S,Nat8:NM_023455:exon3:c.C300A:p.S100S"	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	2	0.9998279	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	85953435	12A2p6	cell line	sgMsh2	85953435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	134	0	0	NA	exonic	Dusp11	synonymous SNV	Dusp11:NM_028099:exon4:c.T366C:p.D122D	6qC3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.501226722	2	0.9999961	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	86449857	12A2p6	cell line	sgMsh2	86449857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	149	0	0	NA	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon5:c.A1001G:p.K334R,C87436:NM_001243742:exon5:c.A1031G:p.K344R,C87436:NM_001364555:exon5:c.A1031G:p.K344R,C87436:NM_001364556:exon5:c.A1031G:p.K344R,C87436:NM_001364557:exon5:c.A1031G:p.K344R,C87436:NM_001364558:exon5:c.A1001G:p.K334R,C87436:NM_146170:exon5:c.A1031G:p.K344R"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.44E-08	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	87465634	12A2p6	cell line	sgMsh2	87465634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	92	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon8:c.A800C:p.K267T,Arhgap25:NM_001037727:exon9:c.A1067C:p.K356T,Arhgap25:NM_175476:exon9:c.A989C:p.K330T"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.754788475	1	0.9128703	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	87845519	12A2p6	cell line	sgMsh2	87845519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	290	0	0	NA	exonic	Cnbp	nonsynonymous SNV	"Cnbp:NM_001109745:exon3:c.T142C:p.Y48H,Cnbp:NM_001109746:exon3:c.T142C:p.Y48H,Cnbp:NM_001347325:exon3:c.T163C:p.Y55H,Cnbp:NM_001355195:exon3:c.T145C:p.Y49H,Cnbp:NM_013493:exon3:c.T163C:p.Y55H"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9999996	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	144	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	0.9999518	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	55	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.8241857	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	52	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997157	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	89332172	12A2p6	cell line	sgMsh2	89332172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	150	0	0	NA	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon18:c.T3424C:p.F1142L	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.22E-08	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
SSC_p20	chr6	89977074	12A2p6	cell line	sgMsh2	89977074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	396	0	0	NA	exonic	Vmn1r46	synonymous SNV	Vmn1r46:NM_053229:exon1:c.T904C:p.L302L	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	90370356	12A2p6	cell line	sgMsh2	90370356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	97	0	0	NA	exonic	Zxdc	nonsynonymous SNV	"Zxdc:NM_030260:exon1:c.A698G:p.H233R,Zxdc:NM_173002:exon1:c.A698G:p.H233R"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	91741197	12A2p6	cell line	sgMsh2	91741197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	236	0	0	NA	exonic	Slc6a6	nonsynonymous SNV	Slc6a6:NM_009320:exon9:c.T991C:p.C331R	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.424568517	2	0.9999964	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	209	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.972969519	1	1.79E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	92167524	12A2p6	cell line	sgMsh2	92167524	T	-	Deletion	Strelka2;Vardict	2	0.1138	167	0	0	NA	exonic	Nr2c2	frameshift deletion	"Nr2c2:NM_001347342:exon15:c.1781delT:p.F596Lfs*9,Nr2c2:NM_011630:exon15:c.1682delT:p.F563Lfs*9"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.671054129	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr6	92796047	12A2p6	cell line	sgMsh2	92796047	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	174	0	0	NA	exonic	Adamts9	nonsynonymous SNV	Adamts9:NM_175314:exon36:c.C5386A:p.P1796T	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9999969	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	93708033	12A2p6	cell line	sgMsh2	93708033	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	166	0	0	NA	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon13:c.C1679T:p.A560V,Magi1:NM_001083321:exon13:c.C1682T:p.A561V,Magi1:NM_001286784:exon13:c.C2327T:p.A776V,Magi1:NM_001286786:exon13:c.C2327T:p.A776V,Magi1:NM_001286788:exon13:c.C1682T:p.A561V,Magi1:NM_010367:exon13:c.C2324T:p.A775V,Magi1:NM_001029850:exon14:c.C2363T:p.A788V,Magi1:NM_001286785:exon14:c.C2363T:p.A788V"	6qD1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.7842724	1	0.9787712	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	97288395	12A2p6	cell line	sgMsh2	97288395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	88	0	0	NA	exonic	Frmd4b	frameshift deletion	"Frmd4b:NM_001346637:exon23:c.3073delT:p.W1025Gfs*9,Frmd4b:NM_001346639:exon23:c.2935delT:p.W979Gfs*9,Frmd4b:NM_145148:exon24:c.2911delT:p.W971Gfs*9"	6qD3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr6	97300286	12A2p6	cell line	sgMsh2	97300286	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	217	0	0	NA	exonic	Frmd4b	frameshift deletion	"Frmd4b:NM_001346637:exon19:c.1845delC:p.K616Sfs*54,Frmd4b:NM_001346639:exon19:c.1707delC:p.K570Sfs*54,Frmd4b:NM_145148:exon20:c.1683delC:p.K562Sfs*54"	6qD3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.79606597	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	282	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	104774501	12A2p6	cell line	sgMsh2	104774501	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	210	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon10:c.A1117T:p.I373F	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.06E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	106716710	12A2p6	cell line	sgMsh2	106716710	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	151	0	0	NA	exonic	Il5ra	nonsynonymous SNV	Il5ra:NM_008370:exon11:c.C1066T:p.L356F	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	AGT	nonsynonymous	TGAG	8	TGAGTGAG	NA
SSC_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	200	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.9999944	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
SSC_p20	chr6	108485320	12A2p6	cell line	sgMsh2	108485320	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	235	0	0	NA	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon49:c.C6342T:p.N2114N	6qE1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9999241	ACA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	107	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.843240249	1	0.9981498	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	111066834	12A2p6	cell line	sgMsh2	111066834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	200	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon3:c.T809C:p.I270T,Grm7:NM_177328:exon3:c.T809C:p.I270T"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	112665281	12A2p6	cell line	sgMsh2	112665281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	235	0	0	NA	exonic	Rad18	nonsynonymous SNV	"Rad18:NM_001167730:exon9:c.T1024C:p.Y342H,Rad18:NM_001381931:exon9:c.T1024C:p.Y342H,Rad18:NM_001381932:exon9:c.T1024C:p.Y342H,Rad18:NM_021385:exon9:c.T1024C:p.Y342H,Rad18:NM_001381933:exon10:c.T628C:p.Y210H"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	113137980	12A2p6	cell line	sgMsh2	113137980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	130	0	0	NA	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.A2561C:p.K854T,Setd5:NM_028385:exon17:c.A2504C:p.K835T"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	1	0.9932738	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	113315417	12A2p6	cell line	sgMsh2	113315417	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	136	0	0	NA	exonic	Brpf1	frameshift deletion	"Brpf1:NM_001282126:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282127:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282128:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_030178:exon3:c.1423delA:p.S476Afs*17"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr6	113372597	12A2p6	cell line	sgMsh2	113372597	G	-	Deletion	Strelka2;Vardict	2	0.1475	61	0	0	NA	exonic	Tada3	stopgain	"Tada3:NM_133932:exon5:c.574delC:p.L192fs*0,Tada3:NM_001372392:exon6:c.598delC:p.L200fs*0,Tada3:NM_001372393:exon6:c.598delC:p.L200fs*0"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.869775782	NA	NA	AGG	nonsynonymous	G	5	GGGGG	-1
SSC_p20	chr6	113465768	12A2p6	cell line	sgMsh2	113465768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	199	0	0	NA	exonic	Il17re	stopgain	"Il17re:NM_001034029:exon7:c.C133T:p.Q45X,Il17re:NM_001362204:exon8:c.C736T:p.Q246X,Il17re:NM_001362205:exon8:c.C736T:p.Q246X,Il17re:NM_145826:exon8:c.C736T:p.Q246X,Il17re:NM_001034031:exon9:c.C133T:p.Q45X"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9999978	TCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	114304017	12A2p6	cell line	sgMsh2	114304017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	171	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon6:c.C531T:p.Y177Y	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.77E-09	ACA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	138	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.79606597	1	0.9880005	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	115949743	12A2p6	cell line	sgMsh2	115949743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	274	0	0	NA	exonic;splicing	H1f8;H1f8	nonsynonymous SNV	H1f8:NM_001346702:exon4:c.T728C:p.V243A	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.81965311	1	0.9997879	GTA	nonsynonymous	AGGT	12	AGGTAGGTAGGT	NA
SSC_p20	chr6	116314375	12A2p6	cell line	sgMsh2	116314375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	209	0	0	NA	exonic	Zfand4	synonymous SNV	"Zfand4:NM_001290339:exon4:c.T588C:p.S196S,Zfand4:NM_001290338:exon6:c.T894C:p.S298S,Zfand4:NM_001309446:exon7:c.T1269C:p.S423S"	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	1	1.16E-09	GTG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
SSC_p20	chr6	116454310	12A2p6	cell line	sgMsh2	116454310	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	124	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon2:c.C156T:p.D52D	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.68992384	2	0.7983955	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	116540700	12A2p6	cell line	sgMsh2	116540700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	472	0	0	NA	exonic	Olfr213	synonymous SNV	Olfr213:NM_001011801:exon1:c.A246G:p.T82T	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.990659873	1	1	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	116695469	12A2p6	cell line	sgMsh2	116695469	T	-	Deletion	Strelka2;Vardict	2	0.1591	132	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon5:c.410delA:p.K137Rfs*20	6qE3	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.938178487	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr6	118088258	12A2p6	cell line	sgMsh2	118088258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	179	0	0	NA	exonic	Rasgef1a	nonsynonymous SNV	"Rasgef1a:NM_001316749:exon10:c.A1182C:p.K394N,Rasgef1a:NM_001362103:exon10:c.A1233C:p.K411N,Rasgef1a:NM_001362104:exon10:c.A1182C:p.K394N,Rasgef1a:NM_027526:exon10:c.A1206C:p.K402N,Rasgef1a:NM_001362105:exon11:c.A1215C:p.K405N"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.978866304	1	7.47E-09	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	118178506	12A2p6	cell line	sgMsh2	118178506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	109	0	0	NA	exonic	Ret	nonsynonymous SNV	"Ret:NM_001080780:exon6:c.T1228C:p.Y410H,Ret:NM_009050:exon6:c.T1228C:p.Y410H"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.7997286	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	118180219	12A2p6	cell line	sgMsh2	118180219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	320	0	0	NA	exonic	Ret	nonsynonymous SNV	"Ret:NM_001080780:exon4:c.A869G:p.E290G,Ret:NM_009050:exon4:c.A869G:p.E290G"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	95	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
SSC_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	175	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.88E-09	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
SSC_p20	chr6	119196172	12A2p6	cell line	sgMsh2	119196172	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.151	122	0	0	NA	exonic	Cacna1c	synonymous SNV	"Cacna1c:NM_001255997:exon1:c.G60A:p.S20S,Cacna1c:NM_001255998:exon1:c.G60A:p.S20S,Cacna1c:NM_001255999:exon1:c.G60A:p.S20S,Cacna1c:NM_009781:exon1:c.G60A:p.S20S"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9998998	ACG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	119749857	12A2p6	cell line	sgMsh2	119749857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	201	0	0	NA	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon12:c.T2138C:p.M713T	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.15E-09	CAT	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr6	120210348	12A2p6	cell line	sgMsh2	120210348	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	116	0	0	NA	exonic	B4galnt3	frameshift deletion	B4galnt3:NM_198884:exon15:c.2088delG:p.R697Afs*56	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.465846012	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr6	120492082	12A2p6	cell line	sgMsh2	120492082	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	95	0	0	NA	exonic	Tmem121b	frameshift deletion	Tmem121b:NM_033567:exon1:c.1673delG:p.G558Afs*8	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.489433152	NA	NA	GCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr6	121387793	12A2p6	cell line	sgMsh2	121387793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	135	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon7:c.A1636G:p.N546D,Iqsec3:NM_001033354:exon8:c.A2536G:p.N846D"	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.902208099	1	0.9999736	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	121644968	12A2p6	cell line	sgMsh2	121644968	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	222	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon9:c.G972A:p.M324I	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9999999	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	121870583	12A2p6	cell line	sgMsh2	121870583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	283	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon16:c.G1919T:p.W640L	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	1.90E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	122063608	12A2p6	cell line	sgMsh2	122063608	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.18	276	0	0	NA	exonic	Mug2	frameshift insertion	Mug2:NM_008646:exon18:c.2117dupA:p.S709Ifs*2	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GCA	frameshift	NA	NA	NA	1
SSC_p20	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	195	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.27E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	123316251	12A2p6	cell line	sgMsh2	123316251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	481	0	0	NA	exonic	Vmn2r19	synonymous SNV	Vmn2r19:NM_001104632:exon3:c.T1251C:p.H417H	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.642749561	2	1.03E-09	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	123393926	12A2p6	cell line	sgMsh2	123393926	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.137	315	0	0	NA	exonic	Vmn2r20	frameshift deletion	Vmn2r20:NM_001104634:exon5:c.1594delA:p.T532Hfs*76	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr6	123704621	12A2p6	cell line	sgMsh2	123704621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	349	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon2:c.A487T:p.I163F	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.72530455	2	0.9856845	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	123823070	12A2p6	cell line	sgMsh2	123823070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	629	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon6:c.T2312A:p.I771N	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	2	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	123825293	12A2p6	cell line	sgMsh2	123825293	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	290	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon5:c.A1650C:p.P550P	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	1	4.89E-08	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	124061284	12A2p6	cell line	sgMsh2	124061284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	470	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon6:c.C1817T:p.A606V	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.961175949	1	1	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	87	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-28417739-124329902	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	124456924	12A2p6	cell line	sgMsh2	124456924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	95	0	0	NA	exonic	Clstn3	synonymous SNV	"Clstn3:NM_001346656:exon8:c.T1165C:p.L389L,Clstn3:NM_153508:exon8:c.T1276C:p.L426L"	6qF2	chr6-124347394-125165591	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.719407765	1	0.7067168	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	124934306	12A2p6	cell line	sgMsh2	124934306	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	135	0	0	NA	exonic	Mlf2	frameshift deletion	"Mlf2:NM_001170341:exon6:c.283delG:p.G96Afs*51,Mlf2:NM_145385:exon6:c.283delG:p.G96Afs*51"	6qF2	chr6-124347394-125165591	8	6	2	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr6	125101957	12A2p6	cell line	sgMsh2	125101957	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	141	0	0	NA	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon7:c.C854A:p.A285D,Chd4:NM_145979:exon7:c.C854A:p.A285D"	6qF2	chr6-124347394-125165591	8	6	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	125604260	12A2p6	cell line	sgMsh2	125604260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon15:c.T1860C:p.D620D	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	274	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	186	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.872724174	1	0.9999831	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	121	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.400981377	2	0.009958468	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	127768716	12A2p6	cell line	sgMsh2	127768716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	90	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon1:c.T32C:p.L11P	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	0.978866304	1	0.9999838	GAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
SSC_p20	chr6	128489128	12A2p6	cell line	sgMsh2	128489128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	122	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon29:c.A3588G:p.Q1196Q	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9999604	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	131311147	12A2p6	cell line	sgMsh2	131311147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	86	0	0	NA	exonic	Styk1	synonymous SNV	Styk1:NM_172891:exon3:c.T252C:p.H84H	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.70171741	1	0.6078105	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr6	131678742	12A2p6	cell line	sgMsh2	131678742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	217	0	0	NA	exonic	Tas2r106	nonsynonymous SNV	Tas2r106:NM_207016:exon1:c.G145A:p.G49S	6qF3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	132763029	12A2p6	cell line	sgMsh2	132763029	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	326	0	0	NA	exonic	Tas2r102	nonsynonymous SNV	Tas2r102:NM_199153:exon1:c.T899C:p.L300P	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	186	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	3	1	1	1.65E-09	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	111	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.896311314	1	0.9998691	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	178	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.949382379	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	135241314	12A2p6	cell line	sgMsh2	135241314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	109	0	0	NA	exonic	Gsg1	synonymous SNV	"Gsg1:NM_001080552:exon4:c.T583C:p.L195L,Gsg1:NM_001080553:exon4:c.T574C:p.L192L,Gsg1:NM_010352:exon5:c.T574C:p.L192L"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	135733866	12A2p6	cell line	sgMsh2	135733866	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	189	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon15:c.C2681T:p.T894I,Grin2b:NM_008171:exon15:c.C2681T:p.T894I"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.48E-09	TGT	nonsynonymous	GT	8	GTGTGTGT	NA
SSC_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	150	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	1	0.09603428	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	136044107	12A2p6	cell line	sgMsh2	136044107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	211	0	0	NA	exonic	Grin2b	synonymous SNV	"Grin2b:NM_001363750:exon4:c.T195C:p.V65V,Grin2b:NM_008171:exon4:c.T195C:p.V65V"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9964145	GAA	synonymous	NA	NA	NA	NA
SSC_p20	chr6	136587336	12A2p6	cell line	sgMsh2	136587336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	211	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon9:c.T2552C:p.I851T	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.06E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	136750978	12A2p6	cell line	sgMsh2	136750978	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	150	0	0	NA	exonic	Gucy2c	frameshift deletion	"Gucy2c:NM_001127318:exon8:c.1025delA:p.N342Mfs*25,Gucy2c:NM_145067:exon8:c.1025delA:p.N342Mfs*25"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.548401001	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	113	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	136765722	12A2p6	cell line	sgMsh2	136765722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	152	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon5:c.T617C:p.L206P,Gucy2c:NM_145067:exon5:c.T617C:p.L206P"	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999997	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.115	201	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.99445	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
SSC_p20	chr6	139843996	12A2p6	cell line	sgMsh2	139843996	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.13	122	0	0	NA	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon2:c.G114T:p.K38N	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.766582045	1	0.9379364	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	131	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	141812722	12A2p6	cell line	sgMsh2	141812722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	256	0	0	NA	exonic	Slco1a4	nonsynonymous SNV	"Slco1a4:NM_001355577:exon13:c.G1562A:p.C521Y,Slco1a4:NM_030687:exon14:c.G1562A:p.C521Y"	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.801962755	1	0.9978955	ACA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	142003391	12A2p6	cell line	sgMsh2	142003391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	236	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon2:c.T258C:p.P86P	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.778375615	1	0.9715789	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr6	142364616	12A2p6	cell line	sgMsh2	142364616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	74	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon13:c.T1487C:p.L496P,Recql:NM_001204907:exon13:c.T1487C:p.L496P,Recql:NM_001355511:exon13:c.T1487C:p.L496P,Recql:NM_023042:exon13:c.T1487C:p.L496P"	6qG2	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	226	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
SSC_p20	chr6	145047295	12A2p6	cell line	sgMsh2	145047295	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	200	0	0	NA	exonic	Bcat1	frameshift deletion	"Bcat1:NM_001024468:exon2:c.276delT:p.F92Lfs*13,Bcat1:NM_007532:exon2:c.75delT:p.F25Lfs*13"	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.925795239	NA	NA	TAA	frameshift	NA	NA	NA	-1
SSC_p20	chr6	145160935	12A2p6	cell line	sgMsh2	145160935	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	116	0	0	NA	exonic	Lrmp	nonsynonymous SNV	"Lrmp:NM_001361633:exon9:c.G356T:p.R119M,Lrmp:NM_001281980:exon11:c.G644T:p.R215M,Lrmp:NM_001368864:exon11:c.G515T:p.R172M,Lrmp:NM_008511:exon11:c.G644T:p.R215M,Lrmp:NM_001281981:exon12:c.G515T:p.R172M"	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999947	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	145816591	12A2p6	cell line	sgMsh2	145816591	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	143	0	0	NA	exonic	Rassf8	nonsynonymous SNV	Rassf8:NM_027760:exon4:c.C1087A:p.L363M	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.28E-08	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	145864671	12A2p6	cell line	sgMsh2	145864671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	298	0	0	NA	exonic	Bhlhe41	synonymous SNV	"Bhlhe41:NM_001271768:exon3:c.T139C:p.L47L,Bhlhe41:NM_024469:exon3:c.T139C:p.L47L"	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.377394238	2	0.9970977	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr6	147027492	12A2p6	cell line	sgMsh2	147027492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	174	0	0	NA	exonic	Ppfibp1	nonsynonymous SNV	"Ppfibp1:NM_026221:exon24:c.T2576C:p.V859A,Ppfibp1:NM_001170433:exon25:c.T2609C:p.V870A,Ppfibp1:NM_001355729:exon25:c.T2576C:p.V859A,Ppfibp1:NM_001355728:exon28:c.T2765C:p.V922A"	6qG3	chr6-125167784-148425959	8	5	3	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	1	0.9518092	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	148846225	12A2p6	cell line	sgMsh2	148846225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	115	0	0	NA	exonic	Caprin2	synonymous SNV	"Caprin2:NM_001301351:exon16:c.A1734G:p.S578S,Caprin2:NM_181541:exon17:c.A2391G:p.S797S"	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTG	synonymous	GAAG	8	GAAGGAAG	NA
SSC_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1661	277	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr6	149166910	12A2p6	cell line	sgMsh2	149166910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	exonic	Amn1	nonsynonymous SNV	"Amn1:NM_001113424:exon6:c.A599G:p.N200S,Amn1:NM_001356344:exon6:c.A470G:p.N157S,Amn1:NM_001381983:exon6:c.A575G:p.N192S"	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	263	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr6	149328706	12A2p6	cell line	sgMsh2	149328706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	307	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A3249G:p.I1083M,Resf1:NM_026054:exon3:c.A3249G:p.I1083M,Resf1:NM_001289661:exon4:c.A3249G:p.I1083M"	6qG3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	4028768	12A2p6	cell line	sgMsh2	4028768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	105	0	0	NA	exonic	Lair1	synonymous SNV	"Lair1:NM_001113474:exon3:c.G339A:p.T113T,Lair1:NM_001302675:exon3:c.G339A:p.T113T,Lair1:NM_001302681:exon3:c.G324A:p.T108T,Lair1:NM_001302682:exon3:c.G324A:p.T108T"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	4486401	12A2p6	cell line	sgMsh2	4486401	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	155	0	0	NA	exonic	Ppp1r12c	nonsynonymous SNV	Ppp1r12c:NM_029834:exon6:c.A920G:p.D307G	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	4628730	12A2p6	cell line	sgMsh2	4628730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	50	0	0	NA	exonic	Tmem86b	nonsynonymous SNV	Tmem86b:NM_023440:exon3:c.C322T:p.H108Y	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9996548	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	5029759	12A2p6	cell line	sgMsh2	5029759	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	203	0	0	NA	exonic	Zfp865	nonsynonymous SNV	"Zfp865:NM_001033383:exon2:c.T742C:p.Y248H,Zfp865:NM_001290426:exon2:c.T742C:p.Y248H"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.12E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	5410859	12A2p6	cell line	sgMsh2	5410859	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	678	0	0	NA	exonic	Vmn1r58	frameshift deletion	Vmn1r58:NM_030739:exon2:c.371delA:p.K124Rfs*2	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	G	5	GGGGG	-1
SSC_p20	chr7	5488738	12A2p6	cell line	sgMsh2	5488738	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	438	0	0	NA	exonic	Vmn2r28	nonsynonymous SNV	Vmn2r28:NM_001081405:exon3:c.G509T:p.G170V	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.666336701	2	3.47E-08	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	6066313	12A2p6	cell line	sgMsh2	6066313	G	T	SNV	Mutect2;Vardict	2	0.019	553	0	0	NA	exonic	Nlrp4c	nonsynonymous SNV	Nlrp4c:NM_031389:exon3:c.G1212T:p.E404D	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.112038914	3	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	6460719	12A2p6	cell line	sgMsh2	6460719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	309	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T209G:p.L70R	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	174	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	CCC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	7289108	12A2p6	cell line	sgMsh2	7289108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	90	0	0	NA	exonic	Clcn4	nonsynonymous SNV	"Clcn4:NM_001357104:exon8:c.A1460G:p.Y487C,Clcn4:NM_001302386:exon9:c.A1523G:p.Y508C,Clcn4:NM_001357102:exon10:c.A1703G:p.Y568C,Clcn4:NM_001357103:exon11:c.A1703G:p.Y568C,Clcn4:NM_011334:exon11:c.A1703G:p.Y568C,Clcn4:NM_001302387:exon12:c.A1610G:p.Y537C"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	10714428	12A2p6	cell line	sgMsh2	10714428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	204	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A557T:p.D186V,Nlrp4b:NM_172481:exon4:c.A557T:p.D186V"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.11E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	10714495	12A2p6	cell line	sgMsh2	10714495	T	C	SNV	Mutect2;Vardict	2	0.025	257	0	0	NA	exonic	Nlrp4b	synonymous SNV	"Nlrp4b:NM_001355151:exon4:c.T624C:p.A208A,Nlrp4b:NM_172481:exon4:c.T624C:p.A208A"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.147419624	3	1	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	12991168	12A2p6	cell line	sgMsh2	12991168	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	93	0	0	NA	exonic	Slc27a5	nonsynonymous SNV	Slc27a5:NM_009512:exon5:c.G1351A:p.G451R	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	13306267	12A2p6	cell line	sgMsh2	13306267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	110	0	0	NA	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon24:c.T2198C:p.I733T,Lig1:NM_001199310:exon24:c.T2198C:p.I733T,Lig1:NM_010715:exon24:c.T2198C:p.I733T"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	13804087	12A2p6	cell line	sgMsh2	13804087	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	490	0	0	NA	exonic	Sult2a1	stopgain	Sult2a1:NM_001111296:exon4:c.G510A:p.W170X	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9999991	GCC	nonsynonymous	CAGC	10	CAGCCAGCCA	NA
SSC_p20	chr7	14425549	12A2p6	cell line	sgMsh2	14425549	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	105	0	0	NA	exonic	Sult2a8	synonymous SNV	"Sult2a8:NM_001199306:exon3:c.C144T:p.H48H,Sult2a8:NM_175250:exon3:c.C144T:p.H48H"	7qA1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999983	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	15397023	12A2p6	cell line	sgMsh2	15397023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	477	0	0	NA	exonic	Obox2	nonsynonymous SNV	Obox2:NM_145708:exon2:c.T179G:p.L60R	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	1.26E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	15945980	12A2p6	cell line	sgMsh2	15945980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	29	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T74C:p.L25P	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9973605	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	16078385	12A2p6	cell line	sgMsh2	16078385	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	0	0	NA	exonic	Zfp541	nonsynonymous SNV	"Zfp541:NM_001099277:exon3:c.G962A:p.S321N,Zfp541:NM_001347559:exon3:c.G962A:p.S321N"	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999112	AGC	nonsynonymous	CCAG	9	CCAGCCAGC	NA
SSC_p20	chr7	16079319	12A2p6	cell line	sgMsh2	16079319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	56	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001099277:exon3:c.T1896C:p.T632T,Zfp541:NM_001347559:exon3:c.T1896C:p.T632T"	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	16083478	12A2p6	cell line	sgMsh2	16083478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	74	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001347559:exon6:c.T2847C:p.P949P,Zfp541:NM_001099277:exon8:c.T3030C:p.P1010P"	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	16723636	12A2p6	cell line	sgMsh2	16723636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	99	0	0	NA	exonic	Ceacam9	nonsynonymous SNV	Ceacam9:NM_011927:exon2:c.A73G:p.T25A	7qA2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.678130271	2	0.7253474	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	18682651	12A2p6	cell line	sgMsh2	18682651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	470	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon3:c.A539G:p.E180G	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	18794266	12A2p6	cell line	sgMsh2	18794266	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	548	0	0	NA	exonic	Psg19	frameshift deletion	Psg19:NM_011964:exon3:c.551delC:p.S184Cfs*7	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CGA	frameshift	NA	NA	NA	-1
SSC_p20	chr7	19148445	12A2p6	cell line	sgMsh2	19148445	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	54	0	0	NA	exonic	Qpctl	stopgain	Qpctl:NM_026111:exon2:c.G285A:p.W95X	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997658	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	106	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999985	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	19287331	12A2p6	cell line	sgMsh2	19287331	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	140	0	0	NA	exonic	Rtn2	frameshift deletion	Rtn2:NM_013648:exon4:c.635delC:p.Q214Rfs*22	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr7	19414281	12A2p6	cell line	sgMsh2	19414281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	133	0	0	NA	exonic	Ckm	synonymous SNV	Ckm:NM_007710:exon2:c.A144G:p.P48P	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	112	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	19918786	12A2p6	cell line	sgMsh2	19918786	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	99	0	0	NA	exonic	Pvr	nonsynonymous SNV	Pvr:NM_027514:exon2:c.A203C:p.K68T	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.21	120	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	24472594	12A2p6	cell line	sgMsh2	24472594	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.129	42	0	0	NA	exonic	Plaur	nonsynonymous SNV	Plaur:NM_011113:exon5:c.A491G:p.Y164C	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.76068526	1	0.9466303	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	24566482	12A2p6	cell line	sgMsh2	24566482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	130	0	0	NA	exonic	Xrcc1	nonsynonymous SNV	"Xrcc1:NM_001360169:exon5:c.A304G:p.I102V,Xrcc1:NM_001360168:exon7:c.A586G:p.I196V,Xrcc1:NM_009532:exon7:c.A589G:p.I197V"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	24758344	12A2p6	cell line	sgMsh2	24758344	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	42	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon4:c.T488G:p.L163R	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9992505	GAG	nonsynonymous	CCTGAG	12	CCTGAGCCTGAG	NA
SSC_p20	chr7	24989803	12A2p6	cell line	sgMsh2	24989803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	64	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.A1792C:p.S598R,Atp1a3:NM_001374627:exon13:c.A1831C:p.S611R"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999112	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	24989809	12A2p6	cell line	sgMsh2	24989809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	66	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.T1786C:p.C596R,Atp1a3:NM_001374627:exon13:c.T1825C:p.C609R"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999268	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	84	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	CGC	synonymous	C	5	CCCCC	NA
SSC_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	78	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999772	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	18	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9923665	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	25669416	12A2p6	cell line	sgMsh2	25669416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	123	0	0	NA	exonic	Tmem91	nonsynonymous SNV	Tmem91:NM_177102:exon4:c.T443C:p.V148A	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	26199170	12A2p6	cell line	sgMsh2	26199170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	370	0	0	NA	exonic	Cyp2b9	nonsynonymous SNV	Cyp2b9:NM_010000:exon6:c.T949C:p.Y317H	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GTA	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr7	26814787	12A2p6	cell line	sgMsh2	26814787	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	93	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon5:c.A817C:p.I273L	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	27032542	12A2p6	cell line	sgMsh2	27032542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	168	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.T707C:p.I236T	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	27180971	12A2p6	cell line	sgMsh2	27180971	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	235	0	0	NA	exonic	Mia	synonymous SNV	Mia:NM_019394:exon1:c.T75C:p.A25A	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.182800334	3	1.00E-09	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	27542090	12A2p6	cell line	sgMsh2	27542090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.193	134	0	0	NA	exonic	Pld3	nonsynonymous SNV	"Pld3:NM_001317355:exon4:c.A26G:p.E9G,Pld3:NM_011116:exon4:c.A26G:p.E9G"	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	28049181	12A2p6	cell line	sgMsh2	28049181	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	69	0	0	NA	exonic	Psmc4	frameshift deletion	Psmc4:NM_011874:exon2:c.58delG:p.V20Cfs*48	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.742994905	NA	NA	ACG	frameshift	NA	NA	NA	-1
SSC_p20	chr7	28178283	12A2p6	cell line	sgMsh2	28178283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	111	0	0	NA	exonic	Fbl	nonsynonymous SNV	Fbl:NM_007991:exon7:c.T779C:p.L260P	7qA3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29009563	12A2p6	cell line	sgMsh2	29009563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	163	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon99:c.A14299G:p.M4767V	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	7.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	26	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9964723	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29377591	12A2p6	cell line	sgMsh2	29377591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	133	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon10:c.A2755G:p.T919A	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29386096	12A2p6	cell line	sgMsh2	29386096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	184	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon8:c.T2075C:p.V692A	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.78E-09	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29704833	12A2p6	cell line	sgMsh2	29704833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	283	0	0	NA	exonic	Catsperg2	nonsynonymous SNV	Catsperg2:NM_029714:exon21:c.A2516G:p.N839S	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29705112	12A2p6	cell line	sgMsh2	29705112	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	133	0	0	NA	exonic	Catsperg2	nonsynonymous SNV	Catsperg2:NM_029714:exon20:c.A2422G:p.T808A	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.265355323	3	0.9995305	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	29845231	12A2p6	cell line	sgMsh2	29845231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	242	0	0	NA	exonic	Zfp940	nonsynonymous SNV	Zfp940:NM_173738:exon5:c.T1250C:p.V417A	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	30192884	12A2p6	cell line	sgMsh2	30192884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	75	0	0	NA	exonic	Capns1	nonsynonymous SNV	Capns1:NM_009795:exon3:c.T226C:p.Y76H	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.7254142	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	30245292	12A2p6	cell line	sgMsh2	30245292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	29	0	0	NA	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon22:c.A2734G:p.S912G	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9973605	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	30922543	12A2p6	cell line	sgMsh2	30922543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	292	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.A217G:p.N73D	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	30958277	12A2p6	cell line	sgMsh2	30958277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	155	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon7:c.A1257G:p.P419P,Lsr:NM_001164184:exon8:c.A1404G:p.P468P,Lsr:NM_017405:exon9:c.A1461G:p.P487P"	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.41E-08	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	30958754	12A2p6	cell line	sgMsh2	30958754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	158	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon6:c.A909G:p.E303E,Lsr:NM_001164184:exon7:c.A1056G:p.E352E,Lsr:NM_017405:exon8:c.A1113G:p.E371E"	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.08E-08	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	31099035	12A2p6	cell line	sgMsh2	31099035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	exonic	Hpn	stoploss	"Hpn:NM_001276269:exon13:c.A1338C:p.X446C,Hpn:NM_008281:exon13:c.A1251C:p.X417C,Hpn:NM_001110252:exon14:c.A1311C:p.X437C"	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	248	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	220	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC_p20	chr7	35203672	12A2p6	cell line	sgMsh2	35203672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	47	0	0	NA	exonic	Lrp3	synonymous SNV	Lrp3:NM_001024707:exon6:c.A1248G:p.Q416Q	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9995383	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	41	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9991742	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	35631282	12A2p6	cell line	sgMsh2	35631282	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	78	0	0	NA	exonic	Ankrd27	frameshift deletion	"Ankrd27:NM_001358876:exon24:c.2585delC:p.T862Rfs*11,Ankrd27:NM_145633:exon25:c.2630delC:p.T877Rfs*11"	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.77247883	NA	NA	ACG	frameshift	CGG	9	CGGCGGCGG	-1
SSC_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	140	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	36768908	12A2p6	cell line	sgMsh2	36768908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	54	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.G321A:p.E107E	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997658	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	36769746	12A2p6	cell line	sgMsh2	36769746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	107	0	0	NA	exonic	Tshz3	frameshift deletion	Tshz3:NM_172298:exon2:c.1159delA:p.K387Nfs*18	7qB2	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr7	38267472	12A2p6	cell line	sgMsh2	38267472	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	0	0	NA	exonic	Pop4	nonsynonymous SNV	Pop4:NM_025390:exon3:c.A184T:p.T62S	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9991742	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	41288341	12A2p6	cell line	sgMsh2	41288341	A	G	SNV	Mutect2;MuSe;Vardict	3	0.081	400	0	0	NA	exonic	Gm5592	nonsynonymous SNV	Gm5592:NM_001033782:exon3:c.A1046G:p.H349R	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.477639582	2	1	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	41872661	12A2p6	cell line	sgMsh2	41872661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	158	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon1:c.A10G:p.I4V	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	ATC	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	496	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	42789024	12A2p6	cell line	sgMsh2	42789024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	327	0	0	NA	exonic	Vmn2r62	nonsynonymous SNV	Vmn2r62:NM_001105059:exon2:c.A387C:p.Q129H	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	43586411	12A2p6	cell line	sgMsh2	43586411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	151	0	0	NA	exonic	Zfp719	nonsynonymous SNV	"Zfp719:NM_001357769:exon3:c.C196A:p.L66M,Zfp719:NM_172482:exon3:c.C196A:p.L66M"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	43769786	12A2p6	cell line	sgMsh2	43769786	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	76	0	0	NA	exonic	Klk12	synonymous SNV	Klk12:NM_027097:exon2:c.T174A:p.L58L	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	50	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	44582513	12A2p6	cell line	sgMsh2	44582513	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	64	0	0	NA	exonic	Napsa	frameshift deletion	Napsa:NM_008437:exon5:c.625delA:p.K209Nfs*21	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr7	44815003	12A2p6	cell line	sgMsh2	44815003	C	-	Deletion	Strelka2;Vardict	2	0.1667	30	0	0	NA	exonic	Atf5	frameshift deletion	Atf5:NM_030693:exon2:c.164delG:p.G55Efs*12	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.982994053	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
SSC_p20	chr7	44885820	12A2p6	cell line	sgMsh2	44885820	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	53	0	0	NA	exonic	Med25	synonymous SNV	"Med25:NM_001331208:exon4:c.C180A:p.G60G,Med25:NM_001331206:exon5:c.C489A:p.G163G,Med25:NM_001331207:exon5:c.C489A:p.G163G,Med25:NM_029365:exon5:c.C489A:p.G163G"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999742	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	44973860	12A2p6	cell line	sgMsh2	44973860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	96	0	0	NA	exonic	Cpt1c	nonsynonymous SNV	"Cpt1c:NM_001252470:exon2:c.A8G:p.E3G,Cpt1c:NM_001357670:exon2:c.A8G:p.E3G,Cpt1c:NM_153679:exon2:c.A8G:p.E3G"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	45091511	12A2p6	cell line	sgMsh2	45091511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	88	0	0	NA	exonic	Rcn3	nonsynonymous SNV	"Rcn3:NM_001355045:exon2:c.G172T:p.A58S,Rcn3:NM_026555:exon2:c.G172T:p.A58S"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	45147281	12A2p6	cell line	sgMsh2	45147281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	55	0	0	NA	exonic	Aldh16a1	nonsynonymous SNV	Aldh16a1:NM_145954:exon7:c.A793G:p.R265G	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9997874	CTG	nonsynonymous	CCTG	9	CCTGCCTGC	NA
SSC_p20	chr7	45327334	12A2p6	cell line	sgMsh2	45327334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	48	0	0	NA	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon4:c.T389C:p.V130A	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	45494665	12A2p6	cell line	sgMsh2	45494665	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	45	0	0	NA	exonic	Nucb1	nonsynonymous SNV	"Nucb1:NM_001163662:exon11:c.G1123A:p.G375R,Nucb1:NM_008749:exon11:c.G1123A:p.G375R"	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994396	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	56	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	46195657	12A2p6	cell line	sgMsh2	46195657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	124	0	0	NA	exonic	Ush1c	stoploss	Ush1c:NM_153677:exon27:c.A2733C:p.X911C	7qB3	chr7-3489139-46263115	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	46310014	12A2p6	cell line	sgMsh2	46310014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon56:c.T8581C:p.Y2861H	7qB3	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	46378336	12A2p6	cell line	sgMsh2	46378336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	46	0	0	NA	exonic	Myod1	nonsynonymous SNV	Myod1:NM_010866:exon3:c.A899G:p.D300G	7qB3	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994913	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	46662078	12A2p6	cell line	sgMsh2	46662078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	62	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T239C:p.F80S,Tph1:NM_001276372:exon3:c.T239C:p.F80S,Tph1:NM_009414:exon3:c.T239C:p.F80S"	7qB3	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	GAA	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr7	48552267	12A2p6	cell line	sgMsh2	48552267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	exonic	Mrgprb2	synonymous SNV	Mrgprb2:NM_175531:exon2:c.T709C:p.L237L	7qB4	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	8.29E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	48867125	12A2p6	cell line	sgMsh2	48867125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	exonic	E2f8	synonymous SNV	"E2f8:NM_001013368:exon13:c.T2505C:p.D835D,E2f8:NM_001360812:exon13:c.T2505C:p.D835D"	7qB4	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	49556971	12A2p6	cell line	sgMsh2	49556971	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	62	0	0	NA	exonic	Nav2	nonsynonymous SNV	"Nav2:NM_175272:exon18:c.T4543G:p.S1515A,Nav2:NM_001111016:exon19:c.T4360G:p.S1454A"	7qB4	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	56135305	12A2p6	cell line	sgMsh2	56135305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	249	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon29:c.C4390T:p.L1464F,Herc2:NM_010418:exon29:c.C4390T:p.L1464F"	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	56297231	12A2p6	cell line	sgMsh2	56297231	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	102	0	0	NA	exonic	Oca2	frameshift deletion	Oca2:NM_021879:exon9:c.1007delT:p.Y337Ifs*2	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.489433152	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr7	56724665	12A2p6	cell line	sgMsh2	56724665	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	112	0	0	NA	exonic	Gabrg3	synonymous SNV	Gabrg3:NM_008074:exon10:c.A1152T:p.P384P	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	GTG	synonymous	GGT	8	GGTGGTGG	NA
SSC_p20	chr7	56734976	12A2p6	cell line	sgMsh2	56734976	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	110	0	0	NA	exonic	Gabrg3	frameshift deletion	Gabrg3:NM_008074:exon7:c.836delA:p.K279Rfs*9	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr7	59275864	12A2p6	cell line	sgMsh2	59275864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	81	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.T389C:p.I130T,Ube3a:NM_011668:exon6:c.T452C:p.I151T"	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	59286057	12A2p6	cell line	sgMsh2	59286057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	53	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon6:c.T1688G:p.M563R,Ube3a:NM_011668:exon8:c.T1751G:p.M584R"	7qB5	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999742	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	62379763	12A2p6	cell line	sgMsh2	62379763	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	131	0	0	NA	exonic	Magel2	frameshift deletion	Magel2:NM_013779:exon1:c.2414delG:p.A807Hfs*66	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.372	28	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr7	63099351	12A2p6	cell line	sgMsh2	63099351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	106	0	0	NA	exonic	Chrna7	nonsynonymous SNV	Chrna7:NM_007390:exon10:c.A1382G:p.K461R	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	64318302	12A2p6	cell line	sgMsh2	64318302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	166	0	0	NA	exonic	Mtmr10	nonsynonymous SNV	Mtmr10:NM_172742:exon9:c.T878C:p.M293T	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.49E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	65329716	12A2p6	cell line	sgMsh2	65329716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	83	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon9:c.A1060G:p.T354A,Tjp1:NM_009386:exon9:c.A1060G:p.T354A"	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	66125637	12A2p6	cell line	sgMsh2	66125637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	125	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon2:c.T713C:p.I238T	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	67733299	12A2p6	cell line	sgMsh2	67733299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.T4614C:p.D1538D,Synm:NM_207663:exon5:c.T3708C:p.D1236D"	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999978	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	68304559	12A2p6	cell line	sgMsh2	68304559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	35	0	0	NA	exonic	Fam169b	nonsynonymous SNV	"Fam169b:NM_001013811:exon3:c.T155C:p.L52P,Fam169b:NM_001374636:exon3:c.T170C:p.L57P"	7qC	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9985232	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	75570003	12A2p6	cell line	sgMsh2	75570003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	179	0	0	NA	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon3:c.T153C:p.S51S	7qD1	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.27E-09	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	75866053	12A2p6	cell line	sgMsh2	75866053	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	89	0	0	NA	exonic	Klhl25	nonsynonymous SNV	"Klhl25:NM_001122780:exon2:c.G706A:p.V236M,Klhl25:NM_029652:exon2:c.G706A:p.V236M,Klhl25:NM_182782:exon2:c.G706A:p.V236M"	7qD1	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9999317	CGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	76425893	12A2p6	cell line	sgMsh2	76425893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	97	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon15:c.T2038C:p.W680R	7qD1	chr7-46263762-78463232	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	CTG	nonsynonymous	CCTG	8	CCTGCCTG	NA
SSC_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	113	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	CAG	synonymous	AGA	8	AGAAGAAG	NA
SSC_p20	chr7	79098860	12A2p6	cell line	sgMsh2	79098860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	100	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon12:c.T3378C:p.D1126D,Acan:NM_007424:exon12:c.T3378C:p.D1126D"	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	79381782	12A2p6	cell line	sgMsh2	79381782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	58	0	0	NA	exonic	Rlbp1	nonsynonymous SNV	"Rlbp1:NM_001173483:exon5:c.T197A:p.L66Q,Rlbp1:NM_001357450:exon5:c.T197A:p.L66Q,Rlbp1:NM_020599:exon5:c.T197A:p.L66Q"	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	79455529	12A2p6	cell line	sgMsh2	79455529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	70	0	0	NA	exonic	Polg	nonsynonymous SNV	"Polg:NM_001360096:exon13:c.A1453G:p.T485A,Polg:NM_001360095:exon14:c.A538G:p.T180A,Polg:NM_017462:exon14:c.A2266G:p.T756A"	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	79693990	12A2p6	cell line	sgMsh2	79693990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	213	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A3602G:p.D1201G	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.05E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	79811118	12A2p6	cell line	sgMsh2	79811118	A	G	SNV	Mutect2;MuSe;Vardict	3	0.276	19	0	0	NA	exonic	Mesp2	nonsynonymous SNV	Mesp2:NM_008589:exon1:c.A190G:p.T64A	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9930676	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	79920545	12A2p6	cell line	sgMsh2	79920545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	39	0	0	NA	exonic	Ap3s2	synonymous SNV	Ap3s2:NM_009682:exon1:c.T33C:p.H11H	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9989976	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	30	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9976039	GCC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	80325665	12A2p6	cell line	sgMsh2	80325665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	62	0	0	NA	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon20:c.A2790G:p.K930K	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	80383918	12A2p6	cell line	sgMsh2	80383918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	81	0	0	NA	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon5:c.T584C:p.L195P	7qD2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	80620550	12A2p6	cell line	sgMsh2	80620550	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	99	0	0	NA	exonic	Crtc3	nonsynonymous SNV	Crtc3:NM_173863:exon4:c.T385G:p.S129A	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999997	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	80717097	12A2p6	cell line	sgMsh2	80717097	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	141	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon37:c.A4774T:p.I1592F	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	51	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996867	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	83982317	12A2p6	cell line	sgMsh2	83982317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	78	0	0	NA	exonic	Cemip	nonsynonymous SNV	Cemip:NM_030728:exon11:c.A1286G:p.N429S	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999772	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	84856814	12A2p6	cell line	sgMsh2	84856814	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	378	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T450G:p.T150T	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	84916353	12A2p6	cell line	sgMsh2	84916353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	319	0	0	NA	exonic	Olfr290	synonymous SNV	Olfr290:NM_146416:exon1:c.T573C:p.S191S	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	188	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.53E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	85415628	12A2p6	cell line	sgMsh2	85415628	A	G	SNV	Mutect2;Vardict	2	0.023	268	0	0	NA	exonic	Vmn2r69	nonsynonymous SNV	Vmn2r69:NM_001105182:exon1:c.T49C:p.F17L	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.135626054	3	1	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	85750671	12A2p6	cell line	sgMsh2	85750671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	491	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.T1154C:p.M385T	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	85958038	12A2p6	cell line	sgMsh2	85958038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	181	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A476G:p.E159G	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.05E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	85958137	12A2p6	cell line	sgMsh2	85958137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	161	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A377G:p.Y126C	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	8.29E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	148	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86268842	12A2p6	cell line	sgMsh2	86268842	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	95	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.A946T:p.N316Y	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999956	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86321611	12A2p6	cell line	sgMsh2	86321611	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	162	0	0	NA	exonic	Olfr308	nonsynonymous SNV	Olfr308:NM_146621:exon1:c.C340A:p.L114I	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.62E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	293	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	86585643	12A2p6	cell line	sgMsh2	86585643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	391	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.G367A:p.A123T	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.274	210	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
SSC_p20	chr7	86761817	12A2p6	cell line	sgMsh2	86761817	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon6:c.C716A:p.P239H,Folh1:NM_016770:exon6:c.C716A:p.P239H"	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999397	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	394	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TGT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86915528	12A2p6	cell line	sgMsh2	86915528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	190	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon1:c.T180C:p.S60S	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.44E-09	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	86920324	12A2p6	cell line	sgMsh2	86920324	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	147	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon2:c.T424A:p.W142R	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	86954408	12A2p6	cell line	sgMsh2	86954408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	263	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon6:c.T1793C:p.I598T	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	87321722	12A2p6	cell line	sgMsh2	87321722	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	117	0	0	NA	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285833:exon9:c.T584G:p.I195S,Nox4:NM_001285835:exon9:c.T584G:p.I195S,Nox4:NM_015760:exon9:c.T806G:p.I269S"	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	87323934	12A2p6	cell line	sgMsh2	87323934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	100	0	0	NA	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285833:exon11:c.A791G:p.Y264C,Nox4:NM_001285835:exon11:c.A791G:p.Y264C,Nox4:NM_015760:exon11:c.A1013G:p.Y338C"	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	88116222	12A2p6	cell line	sgMsh2	88116222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	70	0	0	NA	exonic	Grm5	nonsynonymous SNV	Grm5:NM_001143834:exon10:c.A2657G:p.K886R	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	90160587	12A2p6	cell line	sgMsh2	90160587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	102	0	0	NA	exonic	Picalm	synonymous SNV	"Picalm:NM_001252520:exon2:c.T270C:p.N90N,Picalm:NM_001252521:exon2:c.T270C:p.N90N,Picalm:NM_001252522:exon2:c.T270C:p.N90N,Picalm:NM_001252523:exon2:c.T270C:p.N90N,Picalm:NM_001252524:exon2:c.T270C:p.N90N,Picalm:NM_001360867:exon2:c.T270C:p.N90N,Picalm:NM_146194:exon2:c.T270C:p.N90N"	7qD3	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999978	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	92590164	12A2p6	cell line	sgMsh2	92590164	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	94	0	0	NA	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon11:c.A1415T:p.Q472L	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	97223703	12A2p6	cell line	sgMsh2	97223703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	100	0	0	NA	exonic	Gab2	nonsynonymous SNV	"Gab2:NM_001162477:exon2:c.G312T:p.E104D,Gab2:NM_010248:exon2:c.G312T:p.E104D"	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999973	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	97662217	12A2p6	cell line	sgMsh2	97662217	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	90	0	0	NA	exonic	Rsf1	nonsynonymous SNV	Rsf1:NM_001081267:exon6:c.A2153T:p.N718I	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	AAC	nonsynonymous	GAAA	8	GAAAGAAA	NA
SSC_p20	chr7	98352506	12A2p6	cell line	sgMsh2	98352506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	63	0	0	NA	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.T617C:p.L206P,Tsku:NM_001168539:exon2:c.T617C:p.L206P,Tsku:NM_001168540:exon3:c.T617C:p.L206P,Tsku:NM_001168541:exon4:c.T617C:p.L206P"	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	98645172	12A2p6	cell line	sgMsh2	98645172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	97	0	0	NA	exonic	Emsy	synonymous SNV	"Emsy:NM_001381869:exon5:c.T282C:p.S94S,Emsy:NM_172280:exon5:c.T282C:p.S94S"	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999964	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	98850364	12A2p6	cell line	sgMsh2	98850364	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	75	0	0	NA	exonic	Wnt11	synonymous SNV	"Wnt11:NM_001285795:exon4:c.G228A:p.T76T,Wnt11:NM_009519:exon4:c.G735A:p.T245T,Wnt11:NM_001285794:exon5:c.G540A:p.T180T,Wnt11:NM_001285792:exon6:c.G735A:p.T245T"	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.707614195	1	0.7254142	CGA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	98888183	12A2p6	cell line	sgMsh2	98888183	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	17	0	0	NA	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon15:c.A1804G:p.S602G	7qE1	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9915948	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	100649991	12A2p6	cell line	sgMsh2	100649991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	79	0	0	NA	exonic	Plekhb1	synonymous SNV	"Plekhb1:NM_001163186:exon5:c.T375C:p.V125V,Plekhb1:NM_001163183:exon6:c.T375C:p.V125V,Plekhb1:NM_013746:exon7:c.T432C:p.V144V"	7qE2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	AAA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	101502032	12A2p6	cell line	sgMsh2	101502032	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	60	0	0	NA	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon10:c.C811A:p.L271M,Pde2a:NM_001008548:exon11:c.C832A:p.L278M,Pde2a:NM_001143848:exon11:c.C832A:p.L278M,Pde2a:NM_001243757:exon11:c.C775A:p.L259M,Pde2a:NM_001243758:exon11:c.C862A:p.L288M"	7qE2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998691	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	101580262	12A2p6	cell line	sgMsh2	101580262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	229	0	0	NA	exonic	Art2b	synonymous SNV	Art2b:NM_019915:exon2:c.A429G:p.L143L	7qE2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	CTA	synonymous	TAAAC	12	TAAACTAAACTA	NA
SSC_p20	chr7	102129027	12A2p6	cell line	sgMsh2	102129027	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	94	0	0	NA	exonic	Nup98	synonymous SNV	Nup98:NM_001287164:exon26:c.T4132C:p.L1378L	7qE2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.353807098	2	0.6315203	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	116	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-78477559-102443340	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	107	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999986	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	132	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	102877647	12A2p6	cell line	sgMsh2	102877647	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.262	214	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T526G:p.S176A	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	102877650	12A2p6	cell line	sgMsh2	102877650	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.261	215	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T529C:p.Y177H	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103155345	12A2p6	cell line	sgMsh2	103155345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	138	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A401G:p.Y134C	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103220304	12A2p6	cell line	sgMsh2	103220304	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	196	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G585T:p.K195N	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.24E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103250168	12A2p6	cell line	sgMsh2	103250168	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	310	0	0	NA	exonic	Usp17ld	nonsynonymous SNV	Usp17ld:NM_001001559:exon2:c.T1556G:p.L519R	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103418304	12A2p6	cell line	sgMsh2	103418304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	482	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.A805G:p.S269G	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103470347	12A2p6	cell line	sgMsh2	103470347	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	261	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T307A:p.Y103N	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103470351	12A2p6	cell line	sgMsh2	103470351	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	267	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T311G:p.F104C	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103506420	12A2p6	cell line	sgMsh2	103506420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.271	147	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T525C:p.A175A	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.94E-08	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	103561109	12A2p6	cell line	sgMsh2	103561109	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	201	0	0	NA	exonic	Olfr615	nonsynonymous SNV	Olfr615:NM_147080:exon1:c.G631A:p.D211N	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.15E-09	GGA	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr7	103740314	12A2p6	cell line	sgMsh2	103740314	A	-	Deletion	Mutect2;Strelka2	2	0.183	77	0	0	NA	exonic	Olfr629	frameshift deletion	Olfr629:NM_146821:exon1:c.925delT:p.S309Lfs*8	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr7	103740384	12A2p6	cell line	sgMsh2	103740384	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	97	0	0	NA	exonic	Olfr629	frameshift deletion	Olfr629:NM_146821:exon1:c.855delC:p.T286Lfs*18	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.884517744	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr7	103937925	12A2p6	cell line	sgMsh2	103937925	T	C	SNV	Mutect2;Vardict	2	0.031	162	0	0	NA	exonic	Olfr632	nonsynonymous SNV	Olfr632:NM_147119:exon1:c.T544C:p.Y182H	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	0.182800334	3	7.72E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	103979678	12A2p6	cell line	sgMsh2	103979678	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	220	0	0	NA	exonic	Olfr635	frameshift deletion	Olfr635:NM_147118:exon1:c.503delT:p.F169Sfs*23	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	TCCC	9	TCCCTCCCT	-1
SSC_p20	chr7	104084873	12A2p6	cell line	sgMsh2	104084873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	137	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.C206T:p.S69F	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AGA	nonsynonymous	ACAG	8	ACAGACAG	NA
SSC_p20	chr7	104274785	12A2p6	cell line	sgMsh2	104274785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	74	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon5:c.A758G:p.N253S	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	104329644	12A2p6	cell line	sgMsh2	104329644	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	90	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon1:c.C97A:p.L33I	7qE3	chr7-102446269-104329817	4	2	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	104411408	12A2p6	cell line	sgMsh2	104411408	T	-	Deletion	Strelka2;Vardict	2	0.1	280	0	0	NA	exonic	Trim30a	frameshift deletion	"Trim30a:NM_001357467:exon8:c.1160delA:p.N387Tfs*20,Trim30a:NM_009099:exon8:c.1160delA:p.N387Tfs*20"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.589678496	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
SSC_p20	chr7	104472252	12A2p6	cell line	sgMsh2	104472252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	234	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon7:c.A835G:p.S279G,Trim30d:NM_199146:exon8:c.A1285G:p.S429G"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	121	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	104579774	12A2p6	cell line	sgMsh2	104579774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	173	0	0	NA	exonic	Olfr653	nonsynonymous SNV	Olfr653:NM_147074:exon1:c.C127A:p.L43I	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.28E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	240	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	104859419	12A2p6	cell line	sgMsh2	104859419	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	384	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon2:c.A27C:p.E9D	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	105086590	12A2p6	cell line	sgMsh2	105086590	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	200	0	0	NA	exonic	Olfr679	synonymous SNV	Olfr679:NM_147044:exon1:c.T873C:p.L291L	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.212284259	3	5.71E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr7	105203460	12A2p6	cell line	sgMsh2	105203460	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	101	0	0	NA	exonic	Olfr686	synonymous SNV	Olfr686:NM_147069:exon1:c.T882C:p.Y294Y	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.507123507	2	0.999781	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	105368670	12A2p6	cell line	sgMsh2	105368670	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	174	0	0	NA	exonic	Olfr692	nonsynonymous SNV	Olfr692:NM_146355:exon1:c.A343C:p.M115L	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.07E-09	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	127	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr7	105619140	12A2p6	cell line	sgMsh2	105619140	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	39	0	0	NA	exonic	Trim3	nonsynonymous SNV	"Trim3:NM_001285870:exon4:c.A434C:p.E145A,Trim3:NM_001285871:exon4:c.A434C:p.E145A,Trim3:NM_001285873:exon4:c.A434C:p.E145A,Trim3:NM_001360425:exon4:c.A452C:p.E151A,Trim3:NM_018880:exon4:c.A434C:p.E145A"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9989976	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	106805883	12A2p6	cell line	sgMsh2	106805883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	325	0	0	NA	exonic	Olfr700	nonsynonymous SNV	Olfr700:NM_146600:exon1:c.C578T:p.S193F	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	106873621	12A2p6	cell line	sgMsh2	106873621	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	260	0	0	NA	exonic	Olfr705	nonsynonymous SNV	Olfr705:NM_147032:exon1:c.T623C:p.I208T	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.235871398	3	2.00E-09	AAT	nonsynonymous	GAG	8	GAGGAGGA	NA
SSC_p20	chr7	106886521	12A2p6	cell line	sgMsh2	106886521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	210	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.C295A:p.L99I	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.06E-09	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	106944593	12A2p6	cell line	sgMsh2	106944593	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	224	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T407A:p.M136K	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	217	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107744242	12A2p6	cell line	sgMsh2	107744242	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	67	0	0	NA	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon21:c.T2037G:p.D679E,Ppfibp2:NM_001357437:exon22:c.T2256G:p.D752E,Ppfibp2:NM_001357436:exon23:c.T2289G:p.D763E,Ppfibp2:NM_001163557:exon24:c.T2487G:p.D829E,Ppfibp2:NM_008905:exon25:c.T2520G:p.D840E"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107845085	12A2p6	cell line	sgMsh2	107845085	A	G	SNV	Mutect2;Vardict	2	0.017	634	0	0	NA	exonic	Olfr470	nonsynonymous SNV	Olfr470:NM_146425:exon1:c.T647C:p.V216A	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.100245344	3	1	GAC	nonsynonymous	GACA	8	GACAGACA	NA
SSC_p20	chr7	107845192	12A2p6	cell line	sgMsh2	107845192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	413	0	0	NA	exonic	Olfr470	stopgain	Olfr470:NM_146425:exon1:c.T540A:p.Y180X	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107903492	12A2p6	cell line	sgMsh2	107903492	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.018	514	0	0	NA	exonic	Olfr472	nonsynonymous SNV	Olfr472:NM_146774:exon1:c.T774G:p.I258M	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.106142129	3	1	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107933840	12A2p6	cell line	sgMsh2	107933840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	399	0	0	NA	exonic	Olfr473	nonsynonymous SNV	Olfr473:NM_146775:exon1:c.T319G:p.F107V	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	107990375	12A2p6	cell line	sgMsh2	107990375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	123	0	0	NA	exonic	Olfr477	synonymous SNV	Olfr477:NM_146926:exon1:c.T9C:p.A3A	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	CTC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	276	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ATG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	273	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	108159767	12A2p6	cell line	sgMsh2	108159767	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	462	0	0	NA	exonic	Olfr485	synonymous SNV	Olfr485:NM_001011810:exon1:c.C105T:p.S35S	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TGC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	108323210	12A2p6	cell line	sgMsh2	108323210	C	-	Deletion	Strelka2;Vardict	2	0.1978	465	0	0	NA	exonic	Olfr492	frameshift deletion	Olfr492:NM_146497:exon1:c.465delG:p.I156Ffs*7	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
SSC_p20	chr7	108466106	12A2p6	cell line	sgMsh2	108466106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	483	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A781G:p.I261V	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.252	340	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	108845505	12A2p6	cell line	sgMsh2	108845505	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	398	0	0	NA	exonic	Olfr516	synonymous SNV	Olfr516:NM_146725:exon1:c.C504T:p.Y168Y	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	109477730	12A2p6	cell line	sgMsh2	109477730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	45	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon8:c.T1001C:p.L334P,Trim66:NM_001170913:exon8:c.T695C:p.L232P,Trim66:NM_181853:exon8:c.T695C:p.L232P"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994396	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	109483656	12A2p6	cell line	sgMsh2	109483656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	61	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon4:c.T578C:p.V193A,Trim66:NM_001170913:exon4:c.T272C:p.V91A,Trim66:NM_181853:exon4:c.T272C:p.V91A"	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	110130973	12A2p6	cell line	sgMsh2	110130973	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	128	0	0	NA	exonic	Wee1	nonsynonymous SNV	Wee1:NM_009516:exon6:c.C1283A:p.P428H	7qE3	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	112894458	12A2p6	cell line	sgMsh2	112894458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	85	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.A1161G:p.I387M,Tead1:NM_009346:exon12:c.A1173G:p.I391M,Tead1:NM_001166584:exon13:c.A1236G:p.I412M"	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	178	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.40E-09	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	114232282	12A2p6	cell line	sgMsh2	114232282	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	145	0	0	NA	exonic	Copb1	nonsynonymous SNV	Copb1:NM_033370:exon14:c.G1630T:p.G544W	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	116158057	12A2p6	cell line	sgMsh2	116158057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	48	0	0	NA	exonic	Plekha7	nonsynonymous SNV	"Plekha7:NM_001305186:exon9:c.A1519G:p.S507G,Plekha7:NM_001305189:exon9:c.A1342G:p.S448G,Plekha7:NM_001305190:exon9:c.A1471G:p.S491G,Plekha7:NM_172743:exon9:c.A949G:p.S317G,Plekha7:NM_001305185:exon11:c.A1657G:p.S553G"	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999581	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	117549082	12A2p6	cell line	sgMsh2	117549082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	134	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon3:c.T880C:p.F294L	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	118490892	12A2p6	cell line	sgMsh2	118490892	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.226	63	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.T443A:p.L148Q	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999021	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	118543426	12A2p6	cell line	sgMsh2	118543426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon13:c.A1738G:p.S580G	7qF1	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	119449012	12A2p6	cell line	sgMsh2	119449012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	109	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon8:c.A1373G:p.Y458C	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	119489529	12A2p6	cell line	sgMsh2	119489529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	109	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.A1248G:p.K416K	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999989	ATT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	119578155	12A2p6	cell line	sgMsh2	119578155	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	158	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon6:c.G892T:p.A298S,Acsm2:NM_001177978:exon6:c.G817T:p.A273S,Acsm2:NM_146197:exon6:c.G817T:p.A273S"	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	143	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.28E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	120382411	12A2p6	cell line	sgMsh2	120382411	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	310	0	0	NA	exonic	Abca15	synonymous SNV	Abca15:NM_177213:exon20:c.A3087G:p.L1029L	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.206387474	3	1.00E-09	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	121500719	12A2p6	cell line	sgMsh2	121500719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	exonic	Hs3st2	nonsynonymous SNV	Hs3st2:NM_001081327:exon2:c.T787C:p.Y263H	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999845	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	121935740	12A2p6	cell line	sgMsh2	121935740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	85	0	0	NA	exonic	Cog7	nonsynonymous SNV	Cog7:NM_001033318:exon13:c.T1721C:p.L574P	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	121971366	12A2p6	cell line	sgMsh2	121971366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	163	0	0	NA	exonic	Cog7	frameshift deletion	Cog7:NM_001033318:exon4:c.518delA:p.K173Sfs*7	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr7	122067757	12A2p6	cell line	sgMsh2	122067757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	19	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon2:c.T296C:p.V99A	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9930676	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	122071974	12A2p6	cell line	sgMsh2	122071974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	93	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon5:c.C872T:p.T291I	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999947	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	122076189	12A2p6	cell line	sgMsh2	122076189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	116	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon6:c.T995C:p.M332T	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	122181574	12A2p6	cell line	sgMsh2	122181574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	120	0	0	NA	exonic	Ern2	nonsynonymous SNV	"Ern2:NM_001316689:exon5:c.G353T:p.S118I,Ern2:NM_012016:exon5:c.G353T:p.S118I"	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	122671909	12A2p6	cell line	sgMsh2	122671909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	145	0	0	NA	exonic	Cacng3	nonsynonymous SNV	Cacng3:NM_019430:exon1:c.A136G:p.S46G	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	122999884	12A2p6	cell line	sgMsh2	122999884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	109	0	0	NA	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon17:c.A3417G:p.L1139L	7qF2	chr7-104329818-126292906	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999989	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	126468816	12A2p6	cell line	sgMsh2	126468816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	144	0	0	NA	exonic	Sh2b1	synonymous SNV	"Sh2b1:NM_001081459:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289538:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289539:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289541:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289542:exon7:c.C1665A:p.R555R,Sh2b1:NM_011363:exon7:c.C1665A:p.R555R,Sh2b1:NM_001289540:exon8:c.C1665A:p.R555R"	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.89E-08	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	126547831	12A2p6	cell line	sgMsh2	126547831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	96	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon17:c.T2268G:p.N756K	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	126552054	12A2p6	cell line	sgMsh2	126552054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	85	0	0	NA	exonic	Eif3c	synonymous SNV	Eif3c:NM_146200:exon16:c.T2097C:p.H699H	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999884	CAT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	126586228	12A2p6	cell line	sgMsh2	126586228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	133	0	0	NA	exonic	Apobr	nonsynonymous SNV	Apobr:NM_138310:exon2:c.A910G:p.T304A	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	126587412	12A2p6	cell line	sgMsh2	126587412	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	77	0	0	NA	exonic	Apobr	synonymous SNV	Apobr:NM_138310:exon2:c.C2094T:p.G698G	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	126998574	12A2p6	cell line	sgMsh2	126998574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	128	0	0	NA	exonic	Mvp	nonsynonymous SNV	Mvp:NM_080638:exon4:c.T371C:p.V124A	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127051630	12A2p6	cell line	sgMsh2	127051630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	179	0	0	NA	exonic	Zg16	nonsynonymous SNV	Zg16:NM_026918:exon3:c.T185C:p.V62A	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.27E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127560756	12A2p6	cell line	sgMsh2	127560756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.A9803G:p.K3268R	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999941	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127583520	12A2p6	cell line	sgMsh2	127583520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	70	0	0	NA	exonic	Ccdc189	nonsynonymous SNV	"Ccdc189:NM_001382406:exon8:c.T776C:p.L259P,Ccdc189:NM_001033040:exon9:c.T893C:p.L298P"	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	133	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127783648	12A2p6	cell line	sgMsh2	127783648	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	141	0	0	NA	exonic	Setd1a	stopgain	Setd1a:NM_178029:exon5:c.C537A:p.Y179X	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.17E-08	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	127867162	12A2p6	cell line	sgMsh2	127867162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	86	0	0	NA	exonic	Zfp668	synonymous SNV	"Zfp668:NM_001362190:exon3:c.A849G:p.P283P,Zfp668:NM_001362191:exon3:c.A849G:p.P283P,Zfp668:NM_146259:exon3:c.A849G:p.P283P,Zfp668:NM_001362189:exon4:c.A849G:p.P283P,Zfp668:NM_001362192:exon5:c.A849G:p.P283P"	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999895	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr7	127878688	12A2p6	cell line	sgMsh2	127878688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	185	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.C36T:p.D12D	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.71E-09	ACT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	246	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-126299126-127946235	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	128086037	12A2p6	cell line	sgMsh2	128086037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	165	0	0	NA	exonic	Itgam	nonsynonymous SNV	"Itgam:NM_001082960:exon12:c.A1321G:p.T441A,Itgam:NM_008401:exon12:c.A1321G:p.T441A"	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	128185792	12A2p6	cell line	sgMsh2	128185792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	59	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon9:c.T976C:p.Y326H	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.996556658	1	0.9998426	CTA	nonsynonymous	GCTAT	10	GCTATGCTAT	NA
SSC_p20	chr7	128237187	12A2p6	cell line	sgMsh2	128237187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	207	0	0	NA	exonic	9130023H24Rik	nonsynonymous SNV	9130023H24Rik:NM_177001:exon1:c.A233G:p.K78R	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-09	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	128682320	12A2p6	cell line	sgMsh2	128682320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	0	0	NA	exonic	Inpp5f	nonsynonymous SNV	Inpp5f:NM_178641:exon14:c.T1642C:p.Y548H	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.95E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	131116641	12A2p6	cell line	sgMsh2	131116641	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	144	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5057A:p.V1686D,Dmbt1:NM_001347632:exon46:c.T5090A:p.V1697D"	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	131335518	12A2p6	cell line	sgMsh2	131335518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	100	0	0	NA	exonic	Fam24a	synonymous SNV	Fam24a:NM_183272:exon2:c.T10C:p.L4L	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr7	133647391	12A2p6	cell line	sgMsh2	133647391	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	154	0	0	NA	exonic	Edrf1	nonsynonymous SNV	Edrf1:NM_178115:exon8:c.A944C:p.D315A	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.54E-08	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	135152261	12A2p6	cell line	sgMsh2	135152261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	99	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon47:c.C4766T:p.A1589V	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	135172486	12A2p6	cell line	sgMsh2	135172486	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	214	0	0	NA	exonic	Dock1	frameshift deletion	Dock1:NM_001033420:exon52:c.5542delC:p.P1849Lfs*37	7qF3	chr7-127946236-139614764	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.542504216	NA	NA	TCC	frameshift	CCT	14	CCTCCTCCCCCTCC	-1
SSC_p20	chr7	139661032	12A2p6	cell line	sgMsh2	139661032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	60	0	0	NA	exonic	Cfap46	synonymous SNV	Cfap46:NM_001302546:exon12:c.T1420C:p.L474L	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998691	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	139986776	12A2p6	cell line	sgMsh2	139986776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	174	0	0	NA	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon15:c.T1579A:p.F527I,Adam8:NM_007403:exon15:c.T1582A:p.F528I"	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.07E-09	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	140336044	12A2p6	cell line	sgMsh2	140336044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	370	0	0	NA	exonic	Olfr527	nonsynonymous SNV	Olfr527:NM_001011776:exon1:c.C181A:p.L61M	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	77	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chr7	141084243	12A2p6	cell line	sgMsh2	141084243	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	108	0	0	NA	exonic	Pkp3	synonymous SNV	"Pkp3:NM_019762:exon5:c.A1257G:p.L419L,Pkp3:NM_001162924:exon6:c.A1332G:p.L444L"	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.288942463	3	0.9874048	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr7	141162882	12A2p6	cell line	sgMsh2	141162882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	89	0	0	NA	exonic	Rnh1	nonsynonymous SNV	"Rnh1:NM_001172100:exon7:c.T911C:p.L304S,Rnh1:NM_001172101:exon7:c.T1019C:p.L340S,Rnh1:NM_145135:exon7:c.T911C:p.L304S"	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	141212587	12A2p6	cell line	sgMsh2	141212587	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	113	0	0	NA	exonic	Lmntd2	nonsynonymous SNV	"Lmntd2:NM_001347565:exon5:c.A683G:p.E228G,Lmntd2:NM_028050:exon5:c.A653G:p.E218G,Lmntd2:NM_001382822:exon6:c.A653G:p.E218G"	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.342013528	3	8.09E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	141271804	12A2p6	cell line	sgMsh2	141271804	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	129	0	0	NA	exonic	Cdhr5	nonsynonymous SNV	Cdhr5:NM_001114322:exon13:c.T1586C:p.L529P	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	141278716	12A2p6	cell line	sgMsh2	141278716	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	156	0	0	NA	exonic;splicing	Sct;Sct	nonsynonymous SNV	"Sct:NM_001287171:exon3:c.G192T:p.Q64H,Sct:NM_011328:exon3:c.G192T:p.Q64H"	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.28E-08	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	141870907	12A2p6	cell line	sgMsh2	141870907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	164	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon46:c.T13972G:p.C4658G	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	6.45E-09	CTG	nonsynonymous	ACTGC	11	ACTGCACTGCA	NA
SSC_p20	chr7	142377375	12A2p6	cell line	sgMsh2	142377375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	107	0	0	NA	exonic	Ctsd	nonsynonymous SNV	Ctsd:NM_009983:exon6:c.T779C:p.L260P	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr7	144410734	12A2p6	cell line	sgMsh2	144410734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	92	0	0	NA	exonic	Shank2	nonsynonymous SNV	"Shank2:NM_001081370:exon10:c.A2078G:p.Y693C,Shank2:NM_001113373:exon15:c.A2708G:p.Y903C"	7qF5	chr7-139614769-145323643	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	3851259	12A2p6	cell line	sgMsh2	3851259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	222	0	0	NA	exonic	Cd209e	nonsynonymous SNV	Cd209e:NM_130905:exon5:c.A394G:p.S132G	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	CTA	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr8	5105121	12A2p6	cell line	sgMsh2	5105121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	139	0	0	NA	exonic	Slc10a2	synonymous SNV	Slc10a2:NM_011388:exon1:c.A63G:p.V21V	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	334	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
SSC_p20	chr8	9207773	12A2p6	cell line	sgMsh2	9207773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	57	0	0	NA	exonic	Fam155a	synonymous SNV	Fam155a:NM_173446:exon3:c.G1374A:p.T458T	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998249	GCG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	9972537	12A2p6	cell line	sgMsh2	9972537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	183	0	0	NA	exonic	Lig4	synonymous SNV	"Lig4:NM_001377042:exon2:c.A1242G:p.V414V,Lig4:NM_176953:exon2:c.A1242G:p.V414V"	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.86E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr8	12812332	12A2p6	cell line	sgMsh2	12812332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	246	0	0	NA	exonic	Atp11a	nonsynonymous SNV	"Atp11a:NM_001293667:exon3:c.A183G:p.I61M,Atp11a:NM_001293668:exon3:c.A183G:p.I61M,Atp11a:NM_015804:exon3:c.A183G:p.I61M"	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	106	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999985	TCG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	13454216	12A2p6	cell line	sgMsh2	13454216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	117	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon4:c.A344G:p.Y115C,Tmem255b:NM_001143671:exon5:c.A407G:p.Y136C"	8qA1.1	chr8-3154030-15113963	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	15945033	12A2p6	cell line	sgMsh2	15945033	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	173	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon52:c.C8001A:p.L2667L	8qA1.2	chr8-15113964-21327258	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	3.28E-09	AGA	synonymous	NA	NA	NA	NA
SSC_p20	chr8	18632154	12A2p6	cell line	sgMsh2	18632154	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	118	0	0	NA	exonic	Mcph1	nonsynonymous SNV	Mcph1:NM_173189:exon8:c.G1306T:p.G436C	8qA1.3	chr8-15113964-21327258	5	3	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	19195133	12A2p6	cell line	sgMsh2	19195133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	81	0	0	NA	exonic	Defb14	nonsynonymous SNV	Defb14:NM_183026:exon2:c.T125C:p.V42A	8qA1.3	chr8-15113964-21327258	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.972969519	1	0.9999562	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	22027980	12A2p6	cell line	sgMsh2	22027980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	99	0	0	NA	exonic	Atp7b	nonsynonymous SNV	Atp7b:NM_007511:exon2:c.T841C:p.C281R	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.80785954	1	0.9895265	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	22782006	12A2p6	cell line	sgMsh2	22782006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	118	0	0	NA	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon14:c.T1580C:p.I527T	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	23119085	12A2p6	cell line	sgMsh2	23119085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	147	0	0	NA	exonic	Ank1	synonymous SNV	"Ank1:NM_001277280:exon32:c.T3981C:p.F1327F,Ank1:NM_001277281:exon32:c.T3870C:p.F1290F,Ank1:NM_001277284:exon32:c.T3870C:p.F1290F,Ank1:NM_001110783:exon33:c.T4005C:p.F1335F,Ank1:NM_001277286:exon33:c.T3918C:p.F1306F,Ank1:NM_001277289:exon33:c.T3918C:p.F1306F,Ank1:NM_031158:exon33:c.T3918C:p.F1306F"	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.94E-08	TTG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	23182849	12A2p6	cell line	sgMsh2	23182849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	66	0	0	NA	exonic	Gpat4	nonsynonymous SNV	Gpat4:NM_018743:exon4:c.A350G:p.Y117C	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999268	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	24646316	12A2p6	cell line	sgMsh2	24646316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	163	0	0	NA	exonic	Adam18	synonymous SNV	Adam18:NM_010084:exon12:c.A1188G:p.E396E	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	3	1	1	7.01E-09	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr8	24921299	12A2p6	cell line	sgMsh2	24921299	G	T	SNV	Mutect2;Vardict	2	0.031	180	0	0	NA	exonic	Adam32	stopgain	"Adam32:NM_001293693:exon5:c.C345A:p.C115X,Adam32:NM_153397:exon5:c.C345A:p.C115X"	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.182800334	3	1.80E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	24996778	12A2p6	cell line	sgMsh2	24996778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	145	0	0	NA	exonic	Adam9	nonsynonymous SNV	"Adam9:NM_001270996:exon6:c.A483G:p.I161M,Adam9:NM_007404:exon6:c.A483G:p.I161M"	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.54E-08	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	25169289	12A2p6	cell line	sgMsh2	25169289	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.359	54	0	0	NA	exonic	Tacc1	frameshift insertion	"Tacc1:NM_199323:exon5:c.435dupC:p.V146Rfs*7,Tacc1:NM_177089:exon7:c.1659dupC:p.V554Rfs*7"	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	ACG	frameshift	G	5	GGGGG	1
SSC_p20	chr8	25593815	12A2p6	cell line	sgMsh2	25593815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	168	0	0	NA	exonic	Letm2	synonymous SNV	"Letm2:NM_001364069:exon3:c.A399G:p.K133K,Letm2:NM_173012:exon3:c.A399G:p.K133K"	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr8	25947945	12A2p6	cell line	sgMsh2	25947945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	46	0	0	NA	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon15:c.T1594C:p.C532R	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994913	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	25954655	12A2p6	cell line	sgMsh2	25954655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	50	0	0	NA	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon12:c.A1264C:p.S422R	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	27115250	12A2p6	cell line	sgMsh2	27115250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	74	0	0	NA	exonic	Adgra2	nonsynonymous SNV	Adgra2:NM_054044:exon12:c.T1622C:p.V541A	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999663	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	155	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.41E-08	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	33292568	12A2p6	cell line	sgMsh2	33292568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	171	0	0	NA	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon19:c.A2333G:p.D778G,Wrn:NM_011721:exon19:c.A2333G:p.D778G"	8qA3	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.77E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	33776515	12A2p6	cell line	sgMsh2	33776515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	119	0	0	NA	exonic	Gtf2e2	nonsynonymous SNV	"Gtf2e2:NM_001167921:exon8:c.T825G:p.N275K,Gtf2e2:NM_001167922:exon8:c.T825G:p.N275K,Gtf2e2:NM_026584:exon8:c.T825G:p.N275K"	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	34873091	12A2p6	cell line	sgMsh2	34873091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	125	0	0	NA	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon8:c.A1372G:p.N458D	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	36584904	12A2p6	cell line	sgMsh2	36584904	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	99	0	0	NA	exonic	Dlc1	nonsynonymous SNV	"Dlc1:NM_001194941:exon5:c.A421C:p.S141R,Dlc1:NM_015802:exon5:c.A319C:p.S107R,Dlc1:NM_001194940:exon9:c.A1672C:p.S558R"	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.365600668	2	0.797121	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	36994085	12A2p6	cell line	sgMsh2	36994085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	134	0	0	NA	exonic	AI429214	nonsynonymous SNV	AI429214:NM_001039220:exon1:c.A386G:p.D129G	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	40754601	12A2p6	cell line	sgMsh2	40754601	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	177	0	0	NA	exonic	Adam25	nonsynonymous SNV	Adam25:NM_011781:exon2:c.T903G:p.N301K	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.200490689	3	1.13E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	43652388	12A2p6	cell line	sgMsh2	43652388	T	C	SNV	Mutect2;Vardict	2	0.018	442	0	0	NA	exonic	Adam34	nonsynonymous SNV	Adam34:NM_145745:exon2:c.A219G:p.I73M	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.106142129	3	1	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	572	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	46556178	12A2p6	cell line	sgMsh2	46556178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	103	0	0	NA	exonic	Cenpu	nonsynonymous SNV	"Cenpu:NM_001368403:exon3:c.A187G:p.T63A,Cenpu:NM_027973:exon3:c.A187G:p.T63A"	8qB1.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999998	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.441	88	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
SSC_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	117	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	103	0	0	NA	exonic;splicing	Aga;Aga	nonsynonymous SNV	Aga:NM_001005847:exon7:c.G706T:p.G236W	8qB1.3	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	58911410	12A2p6	cell line	sgMsh2	58911410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	123	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon1:c.T65C:p.L22P	8qB2	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.660439916	2	0.9477753	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	62076263	12A2p6	cell line	sgMsh2	62076263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	256	0	0	NA	exonic	Anxa10	nonsynonymous SNV	Anxa10:NM_011922:exon5:c.A419G:p.Y140C	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.931692024	1	2.34E-09	ATA	nonsynonymous	CATA	8	CATACATA	NA
SSC_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	87	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999905	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	65014576	12A2p6	cell line	sgMsh2	65014576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	142	0	0	NA	exonic	Trim61	nonsynonymous SNV	"Trim61:NM_001177551:exon2:c.A32G:p.Q11R,Trim61:NM_153110:exon3:c.A32G:p.Q11R"	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	3	1	1	4.71E-08	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	66418914	12A2p6	cell line	sgMsh2	66418914	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	93	0	0	NA	exonic	Marchf1	nonsynonymous SNV	"Marchf1:NM_001166375:exon2:c.G311T:p.W104L,Marchf1:NM_001166372:exon6:c.G341T:p.W114L,Marchf1:NM_001363123:exon6:c.G329T:p.W110L,Marchf1:NM_001363125:exon6:c.G329T:p.W110L,Marchf1:NM_175188:exon6:c.G329T:p.W110L,Marchf1:NM_001293784:exon7:c.G341T:p.W114L,Marchf1:NM_001363124:exon7:c.G341T:p.W114L"	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999947	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	66456121	12A2p6	cell line	sgMsh2	66456121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	106	0	0	NA	exonic	Marchf1	synonymous SNV	"Marchf1:NM_001166375:exon3:c.C462T:p.I154I,Marchf1:NM_001166372:exon7:c.C492T:p.I164I,Marchf1:NM_001363123:exon7:c.C480T:p.I160I,Marchf1:NM_001363125:exon7:c.C480T:p.I160I,Marchf1:NM_175188:exon7:c.C480T:p.I160I,Marchf1:NM_001293784:exon8:c.C492T:p.I164I,Marchf1:NM_001363124:exon8:c.C492T:p.I164I"	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	TCG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	66511988	12A2p6	cell line	sgMsh2	66511988	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	152	0	0	NA	exonic	Tktl2	nonsynonymous SNV	"Tktl2:NM_001271574:exon1:c.A197C:p.E66A,Tktl2:NM_028927:exon1:c.A197C:p.E66A"	8qB3.1	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.85E-08	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	68346072	12A2p6	cell line	sgMsh2	68346072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	50	0	0	NA	exonic	Sh2d4a	nonsynonymous SNV	Sh2d4a:NM_028182:exon8:c.T1072C:p.C358R	8qB3.3	chr8-21702348-69796731	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	69815491	12A2p6	cell line	sgMsh2	69815491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	118	0	0	NA	exonic	Gmip	nonsynonymous SNV	Gmip:NM_198101:exon12:c.G1194T:p.E398D	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999995	AGG	nonsynonymous	GGA	11	GGAGGAGGAGG	NA
SSC_p20	chr8	70112056	12A2p6	cell line	sgMsh2	70112056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	19	0	0	NA	exonic	Ncan	nonsynonymous SNV	Ncan:NM_007789:exon6:c.T907C:p.C303R	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9930676	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	70135080	12A2p6	cell line	sgMsh2	70135080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	105	0	0	NA	exonic	Rfxank	synonymous SNV	"Rfxank:NM_001025589:exon6:c.T520C:p.L174L,Rfxank:NM_011266:exon6:c.T550C:p.L184L"	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999983	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr8	70166623	12A2p6	cell line	sgMsh2	70166623	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.149	73	0	0	NA	exonic	Gm45929;Mef2b	nonsynonymous SNV	"Mef2b:NM_001045484:exon7:c.T637C:p.Y213H,Gm45929:NM_001310055:exon7:c.T667C:p.Y223H"	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.878620959	1	0.9983308	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	70174385	12A2p6	cell line	sgMsh2	70174385	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	84	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	Tmem161a:NM_145597:exon2:c.G86A:p.R29H	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999872	CGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
SSC_p20	chr8	70251633	12A2p6	cell line	sgMsh2	70251633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	58	0	0	NA	exonic	Sugp2	nonsynonymous SNV	"Sugp2:NM_001168290:exon5:c.A1819G:p.S607G,Sugp2:NM_172755:exon5:c.A1819G:p.S607G"	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	70386210	12A2p6	cell line	sgMsh2	70386210	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	113	0	0	NA	exonic	Crtc1	synonymous SNV	Crtc1:NM_001004062:exon14:c.C1807T:p.L603L	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	AGG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	71537373	12A2p6	cell line	sgMsh2	71537373	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.309	67	0	0	NA	exonic	Bst2	frameshift insertion	Bst2:NM_198095:exon1:c.54dupG:p.K19Efs*40	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TTC	frameshift	C	5	CCCCC	1
SSC_p20	chr8	71684012	12A2p6	cell line	sgMsh2	71684012	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	141	0	0	NA	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr8	71684069	12A2p6	cell line	sgMsh2	71684069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	163	0	0	NA	exonic	Jak3	synonymous SNV	"Jak3:NM_001190830:exon15:c.T2019C:p.T673T,Jak3:NM_010589:exon15:c.T2019C:p.T673T"	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	7.01E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	56	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-69796732-72753900	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9998071	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
SSC_p20	chr8	75050209	12A2p6	cell line	sgMsh2	75050209	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	180	0	0	NA	exonic	Tom1	nonsynonymous SNV	"Tom1:NM_001136259:exon3:c.G157A:p.A53T,Tom1:NM_011622:exon3:c.G157A:p.A53T"	8qC1	chr8-72756181-83669829	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	78436366	12A2p6	cell line	sgMsh2	78436366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	82	0	0	NA	exonic	Pou4f2	nonsynonymous SNV	Pou4f2:NM_138944:exon1:c.C39A:p.S13R	8qC1	chr8-72756181-83669829	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999845	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	83929624	12A2p6	cell line	sgMsh2	83929624	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	203	0	0	NA	exonic	Adgrl1	stopgain	Adgrl1:NM_181039:exon5:c.T555A:p.Y185X	8qC2	chr8-83669897-85097201	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.12E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	84234985	12A2p6	cell line	sgMsh2	84234985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	62	0	0	NA	exonic	Zswim4	synonymous SNV	Zswim4:NM_172503:exon2:c.A258G:p.E86E	8qC2	chr8-83669897-85097201	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998922	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	50	0	0	NA	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-83669897-85097201	7	5	2	0.9	5.307106465	RARE KARYOTYPE	1	0.908104884	1	0.9975187	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	84915523	12A2p6	cell line	sgMsh2	84915523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	137	0	0	NA	exonic	Mast1	synonymous SNV	Mast1:NM_019945:exon24:c.G3201A:p.R1067R	8qC3	chr8-83669897-85097201	7	5	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999999	GCC	synonymous	NA	NA	NA	NA
SSC_p20	chr8	85001225	12A2p6	cell line	sgMsh2	85001225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	90	0	0	NA	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001372361:exon16:c.A1498G:p.T500A,Hook2:NM_001372357:exon17:c.A1903G:p.T635A,Hook2:NM_001372360:exon17:c.A1666G:p.T556A,Hook2:NM_001167991:exon18:c.A1705G:p.T569A,Hook2:NM_001372358:exon18:c.A1705G:p.T569A,Hook2:NM_001372359:exon18:c.A1705G:p.T569A,Hook2:NM_001372362:exon18:c.A1300G:p.T434A,Hook2:NM_133255:exon18:c.A1705G:p.T569A,Hook2:NM_001363497:exon19:c.A1714G:p.T572A,Hook2:NM_001363498:exon19:c.A1633G:p.T545A"	8qC3	chr8-83669897-85097201	7	5	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999929	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	87471767	12A2p6	cell line	sgMsh2	87471767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	85	0	0	NA	exonic	Cbln1	synonymous SNV	Cbln1:NM_019626:exon2:c.T309C:p.T103T	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	87568546	12A2p6	cell line	sgMsh2	87568546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	126	0	0	NA	exonic	4933402J07Rik	nonsynonymous SNV	4933402J07Rik:NM_177901:exon3:c.T311C:p.I104T	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999998	ATA	nonsynonymous	GAAAT	10	GAAATGAAAT	NA
SSC_p20	chr8	87782994	12A2p6	cell line	sgMsh2	87782994	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	75	0	0	NA	exonic	Zfp423	nonsynonymous SNV	"Zfp423:NM_001310520:exon2:c.T346A:p.S116T,Zfp423:NM_033327:exon4:c.T721A:p.S241T"	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999694	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	88156793	12A2p6	cell line	sgMsh2	88156793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	178	0	0	NA	exonic	Heatr3	nonsynonymous SNV	Heatr3:NM_172757:exon9:c.A1253G:p.H418R	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.40E-09	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	88591669	12A2p6	cell line	sgMsh2	88591669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	77	0	0	NA	exonic	Nkd1	synonymous SNV	"Nkd1:NM_001163660:exon8:c.A621G:p.Q207Q,Nkd1:NM_027280:exon10:c.A933G:p.Q311Q"	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999748	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr8	88684467	12A2p6	cell line	sgMsh2	88684467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	89	0	0	NA	exonic	Nod2	synonymous SNV	Nod2:NM_145857:exon11:c.C2907A:p.T969T	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr8	88705480	12A2p6	cell line	sgMsh2	88705480	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	104	0	0	NA	exonic	Cyld	synonymous SNV	"Cyld:NM_001128170:exon2:c.T105G:p.T35T,Cyld:NM_173369:exon2:c.T105G:p.T35T,Cyld:NM_001128171:exon3:c.T105G:p.T35T,Cyld:NM_001276279:exon3:c.T105G:p.T35T"	8qC3	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999982	CTC	synonymous	ACAA	10	ACAAACAAAC	NA
SSC_p20	chr8	92678500	12A2p6	cell line	sgMsh2	92678500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	56	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.C995T:p.T332M,Irx6:NM_022428:exon5:c.C995T:p.T332M"	8qC5	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998071	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	93106563	12A2p6	cell line	sgMsh2	93106563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	104	0	0	NA	exonic	Ces1c	nonsynonymous SNV	Ces1c:NM_007954:exon10:c.A1273G:p.R425G	8qC5	chr8-85097202-94345152	5	4	1	0.9	5.307106465	RARE KARYOTYPE	1	0.754788475	1	0.09548868	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	95011799	12A2p6	cell line	sgMsh2	95011799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	119	0	0	NA	exonic	Adgrg1	nonsynonymous SNV	"Adgrg1:NM_001198894:exon13:c.T1919C:p.I640T,Adgrg1:NM_018882:exon13:c.T1919C:p.I640T"	8qC5	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	105049902	12A2p6	cell line	sgMsh2	105049902	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.206	218	0	0	NA	exonic	Ces3a	nonsynonymous SNV	"Ces3a:NM_001164681:exon2:c.A121T:p.T41S,Ces3a:NM_198672:exon2:c.A121T:p.T41S"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	TAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr8	105308779	12A2p6	cell line	sgMsh2	105308779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	116	0	0	NA	exonic	Elmo3	synonymous SNV	Elmo3:NM_172760:exon15:c.G1506A:p.L502L	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	TGA	synonymous	NA	NA	NA	NA
SSC_p20	chr8	105329467	12A2p6	cell line	sgMsh2	105329467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	114	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon22:c.T3524C:p.L1175P	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	105697256	12A2p6	cell line	sgMsh2	105697256	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.198	85	0	0	NA	exonic	Carmil2	nonsynonymous SNV	Carmil2:NM_001357333:exon36:c.A3740G:p.E1247G	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999884	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	105709426	12A2p6	cell line	sgMsh2	105709426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	38	0	0	NA	exonic	4933405L10Rik	nonsynonymous SNV	"4933405L10Rik:NM_001357256:exon3:c.T329C:p.V110A,4933405L10Rik:NM_027655:exon3:c.T329C:p.V110A"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9988956	GTG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	70	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999504	GGC	synonymous	NA	NA	NA	NA
SSC_p20	chr8	106555377	12A2p6	cell line	sgMsh2	106555377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	122	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon16:c.A2396G:p.Y799C,Cdh3:NM_007665:exon16:c.A2393G:p.Y798C"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	106935824	12A2p6	cell line	sgMsh2	106935824	C	A	SNV	Mutect2;Vardict	2	0.5	7	0	0	NA	exonic	Sntb2	nonsynonymous SNV	"Sntb2:NM_001368316:exon1:c.C23A:p.T8N,Sntb2:NM_009229:exon1:c.C23A:p.T8N"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9775345	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	107453007	12A2p6	cell line	sgMsh2	107453007	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	131	0	0	NA	exonic	Wwp2	nonsynonymous SNV	Wwp2:NM_025830:exon2:c.G14A:p.S5N	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.754788475	1	0.883043	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	563	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	1	ACA	synonymous	NA	NA	NA	NA
SSC_p20	chr8	109935591	12A2p6	cell line	sgMsh2	109935591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	131	0	0	NA	exonic	Phlpp2	nonsynonymous SNV	Phlpp2:NM_001122594:exon17:c.T2609C:p.V870A	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	110143090	12A2p6	cell line	sgMsh2	110143090	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	57	0	0	NA	exonic	Calb2	frameshift deletion	"Calb2:NM_001368294:exon10:c.720delC:p.V241delinsCKGVKGQGLLLRLP,Calb2:NM_001368293:exon11:c.807delC:p.V270delinsCKGVKGQGLLLRLP,Calb2:NM_007586:exon11:c.810delC:p.V271delinsCKGVKGQGLLLRLP"	8qD3	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr8	110738693	12A2p6	cell line	sgMsh2	110738693	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	19	0	0	NA	exonic	Mtss2	frameshift deletion	"Mtss2:NM_001310591:exon14:c.1578delT:p.L527Wfs*26,Mtss2:NM_198625:exon14:c.1764delT:p.L589Wfs*26"	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
SSC_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	77	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	0.9999748	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	119	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999996	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	113777746	12A2p6	cell line	sgMsh2	113777746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	180	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon4:c.A712C:p.S238R	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.16E-09	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	119633328	12A2p6	cell line	sgMsh2	119633328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	0	0	NA	exonic	Kcng4	nonsynonymous SNV	"Kcng4:NM_001357210:exon2:c.A308G:p.Y103C,Kcng4:NM_025734:exon2:c.A308G:p.Y103C"	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9993197	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	119773276	12A2p6	cell line	sgMsh2	119773276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	153	0	0	NA	exonic	Meak7	nonsynonymous SNV	Meak7:NM_028883:exon2:c.T143G:p.M48R	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	1	1.68E-08	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	120083356	12A2p6	cell line	sgMsh2	120083356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	132	0	0	NA	exonic	Zdhhc7	synonymous SNV	Zdhhc7:NM_133967:exon7:c.C624T:p.C208C	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TGC	synonymous	NA	NA	NA	NA
SSC_p20	chr8	121782243	12A2p6	cell line	sgMsh2	121782243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	63	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon3:c.A1243G:p.T415A	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	121888323	12A2p6	cell line	sgMsh2	121888323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	218	0	0	NA	exonic	Slc7a5	nonsynonymous SNV	Slc7a5:NM_011404:exon3:c.T784C:p.W262R	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.03E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	122269834	12A2p6	cell line	sgMsh2	122269834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	81	0	0	NA	exonic	Zfp469	nonsynonymous SNV	Zfp469:NM_001362883:exon3:c.C9768A:p.N3256K	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	122305400	12A2p6	cell line	sgMsh2	122305400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	32	0	0	NA	exonic	Zfpm1	nonsynonymous SNV	Zfpm1:NM_009569:exon2:c.T83C:p.M28T	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9980255	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	122439459	12A2p6	cell line	sgMsh2	122439459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	54	0	0	NA	exonic	Mvd	synonymous SNV	Mvd:NM_138656:exon4:c.C324T:p.S108S	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	1	0.943485594	1	0.9991312	AGC	synonymous	GCTGAG	13	GCTGAGGCTGAGG	NA
SSC_p20	chr8	123066560	12A2p6	cell line	sgMsh2	123066560	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	294	0	0	NA	exonic	Spg7	nonsynonymous SNV	"Spg7:NM_001364435:exon2:c.C271A:p.L91M,Spg7:NM_153176:exon2:c.C271A:p.L91M"	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	123199101	12A2p6	cell line	sgMsh2	123199101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	133	0	0	NA	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon4:c.A294G:p.I98M	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr8	123200246	12A2p6	cell line	sgMsh2	123200246	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.486	137	0	0	NA	exonic	Dpep1	frameshift deletion	Dpep1:NM_007876:exon8:c.808delA:p.N270Tfs*54	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	3	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr8	123373942	12A2p6	cell line	sgMsh2	123373942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	45	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001037877:exon1:c.T70C:p.L24L,Tcf25:NM_001037878:exon1:c.T70C:p.L24L,Tcf25:NM_001286362:exon1:c.T70C:p.L24L,Tcf25:NM_001286363:exon1:c.T70C:p.L24L,Tcf25:NM_001359075:exon1:c.T70C:p.L24L,Tcf25:NM_001359076:exon1:c.T70C:p.L24L,Tcf25:NM_025804:exon1:c.T70C:p.L24L"	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9994396	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr8	123384396	12A2p6	cell line	sgMsh2	123384396	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	222	0	0	NA	exonic	Tcf25	nonsynonymous SNV	"Tcf25:NM_001286362:exon4:c.C521T:p.A174V,Tcf25:NM_001286363:exon4:c.C521T:p.A174V,Tcf25:NM_001359076:exon4:c.C521T:p.A174V,Tcf25:NM_001037877:exon5:c.C596T:p.A199V,Tcf25:NM_001037878:exon5:c.C596T:p.A199V,Tcf25:NM_001359075:exon5:c.C596T:p.A199V,Tcf25:NM_025804:exon5:c.C596T:p.A199V"	8qE1	chr8-94346062-127324475	6	4	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.02E-09	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	5322821	12A2p6	cell line	sgMsh2	5322821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	165	0	0	NA	exonic	Casp4	synonymous SNV	"Casp4:NM_001379318:exon3:c.T96A:p.A32A,Casp4:NM_001379320:exon3:c.T264A:p.A88A,Casp4:NM_001379323:exon3:c.T24A:p.S8S,Casp4:NM_007609:exon3:c.T264A:p.A88A"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.95E-09	CTA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	5352758	12A2p6	cell line	sgMsh2	5352758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	101	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon6:c.T579G:p.D193E	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.984763089	1	0.9999952	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	7035657	12A2p6	cell line	sgMsh2	7035657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	94	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon67:c.A10266G:p.L3422L	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999952	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	7171000	12A2p6	cell line	sgMsh2	7171000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon5:c.T628C:p.Y210H,Dync2h1:NM_029851:exon5:c.T628C:p.Y210H"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	7272810	12A2p6	cell line	sgMsh2	7272810	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	191	0	0	NA	exonic	Mmp13	nonsynonymous SNV	Mmp13:NM_008607:exon2:c.C169A:p.L57M	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.40E-09	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	9046607	12A2p6	cell line	sgMsh2	9046607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	67	0	0	NA	exonic	Arhgap42	stopgain	"Arhgap42:NM_001372566:exon7:c.C628T:p.Q210X,Arhgap42:NM_027823:exon7:c.C628T:p.Q210X,Arhgap42:NM_001372563:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372564:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372565:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372567:exon8:c.C730T:p.Q244X"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	9115750	12A2p6	cell line	sgMsh2	9115750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	88	0	0	NA	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372570:exon3:c.T228C:p.A76A,Arhgap42:NM_001372563:exon4:c.T324C:p.A108A,Arhgap42:NM_001372564:exon4:c.T324C:p.A108A,Arhgap42:NM_001372565:exon4:c.T324C:p.A108A,Arhgap42:NM_001372566:exon4:c.T324C:p.A108A,Arhgap42:NM_001372567:exon4:c.T324C:p.A108A,Arhgap42:NM_001372568:exon4:c.T324C:p.A108A,Arhgap42:NM_027823:exon4:c.T324C:p.A108A"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999913	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	9180096	12A2p6	cell line	sgMsh2	9180096	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	84	0	0	NA	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372564:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372565:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372566:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372567:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372568:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372569:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_027823:exon2:c.181delT:p.S61Pfs*26"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chr9	9706075	12A2p6	cell line	sgMsh2	9706075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	141	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1732G:p.S578G,Cntn5:NM_001170787:exon19:c.A2347G:p.S783G"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	9706084	12A2p6	cell line	sgMsh2	9706084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	129	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1723C:p.S575R,Cntn5:NM_001170787:exon19:c.A2338C:p.S780R"	9qA1	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	14464244	12A2p6	cell line	sgMsh2	14464244	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.273	139	0	0	NA	exonic	Kdm4d	frameshift deletion	Kdm4d:NM_173433:exon2:c.317delA:p.K106Sfs*61	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr9	14703632	12A2p6	cell line	sgMsh2	14703632	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	42	0	0	NA	exonic	Piwil4	frameshift deletion	"Piwil4:NM_001368836:exon9:c.1070delC:p.P357Hfs*19,Piwil4:NM_001368831:exon18:c.2240delC:p.P747Hfs*19,Piwil4:NM_001368832:exon18:c.2240delC:p.P747Hfs*18"	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr9	15307798	12A2p6	cell line	sgMsh2	15307798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	149	0	0	NA	exonic	Taf1d	synonymous SNV	"Taf1d:NM_027261:exon2:c.A45G:p.R15R,Taf1d:NM_029248:exon2:c.A45G:p.R15R"	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.44E-08	GAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	15962782	12A2p6	cell line	sgMsh2	15962782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	58	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon18:c.T10550A:p.L3517Q	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998411	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	85	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999884	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	15996745	12A2p6	cell line	sgMsh2	15996745	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	189	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T7972G:p.W2658G	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.48E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	16030011	12A2p6	cell line	sgMsh2	16030011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	69	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.A3995G:p.D1332G	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999453	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	16031155	12A2p6	cell line	sgMsh2	16031155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	106	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon5:c.T3932C:p.M1311T	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999985	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	16376776	12A2p6	cell line	sgMsh2	16376776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	202	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon2:c.A1462G:p.T488A	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.14E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	18410065	12A2p6	cell line	sgMsh2	18410065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	105	0	0	NA	exonic	Ubtfl1	synonymous SNV	"Ubtfl1:NM_001360216:exon2:c.T888C:p.P296P,Ubtfl1:NM_001033793:exon3:c.T888C:p.P296P"	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	0.9999381	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	19249191	12A2p6	cell line	sgMsh2	19249191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	164	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T207C:p.T69T	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	19249203	12A2p6	cell line	sgMsh2	19249203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	164	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T195C:p.N65N	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	6.45E-09	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	19441517	12A2p6	cell line	sgMsh2	19441517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	157	0	0	NA	exonic	Olfr849	synonymous SNV	Olfr849:NM_146527:exon1:c.A603G:p.T201T	9qA2	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.18E-08	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	159	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	9.86E-09	TAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	19808619	12A2p6	cell line	sgMsh2	19808619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	445	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G300T:p.Q100H	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	19808925	12A2p6	cell line	sgMsh2	19808925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	260	0	0	NA	exonic	Olfr859	synonymous SNV	Olfr859:NM_146526:exon1:c.A606G:p.L202L	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TAA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	20260333	12A2p6	cell line	sgMsh2	20260333	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	215	0	0	NA	exonic	Olfr872	nonsynonymous SNV	Olfr872:NM_146560:exon2:c.G492T:p.L164F	9qA3	chr9-4330518-20646946	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.04E-09	TGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	20891529	12A2p6	cell line	sgMsh2	20891529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	0	0	NA	exonic	Ppan	nonsynonymous SNV	Ppan:NM_145610:exon10:c.A980G:p.N327S	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999955	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	20927139	12A2p6	cell line	sgMsh2	20927139	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	181	0	0	NA	exonic	Dnmt1	frameshift deletion	"Dnmt1:NM_001199431:exon13:c.984delA:p.K328Nfs*22,Dnmt1:NM_001199432:exon13:c.627delA:p.K209Nfs*22,Dnmt1:NM_001199433:exon13:c.630delA:p.K210Nfs*22,Dnmt1:NM_001314011:exon13:c.1005delA:p.K335Nfs*22,Dnmt1:NM_010066:exon13:c.981delA:p.K327Nfs*22"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
SSC_p20	chr9	21025563	12A2p6	cell line	sgMsh2	21025563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	21	0	0	NA	exonic	Icam1	synonymous SNV	Icam1:NM_010493:exon3:c.G348A:p.E116E	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9942833	AGC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	21266748	12A2p6	cell line	sgMsh2	21266748	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	133	0	0	NA	exonic	Atg4d	nonsynonymous SNV	Atg4d:NM_153583:exon2:c.T245G:p.V82G	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21345940	12A2p6	cell line	sgMsh2	21345940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	175	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon14:c.A1174G:p.K392E,Slc44a2:NM_001359227:exon14:c.A1174G:p.K392E,Slc44a2:NM_152808:exon14:c.A1180G:p.K394E"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.837343464	1	0.9996146	CAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21397582	12A2p6	cell line	sgMsh2	21397582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	63	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon12:c.T1294C:p.F432L,Ilf3:NM_001042709:exon12:c.T1294C:p.F432L,Ilf3:NM_001042708:exon13:c.T1333C:p.F445L,Ilf3:NM_001277321:exon13:c.T1333C:p.F445L,Ilf3:NM_010561:exon13:c.T1333C:p.F445L,Ilf3:NM_001277322:exon14:c.T1333C:p.F445L"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999021	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21589965	12A2p6	cell line	sgMsh2	21589965	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	80	0	0	NA	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon7:c.T706A:p.S236T,Yipf2:NM_138303:exon7:c.T706A:p.S236T,Yipf2:NM_001205157:exon8:c.T706A:p.S236T,Yipf2:NM_001205158:exon8:c.T706A:p.S236T,Yipf2:NM_001359299:exon8:c.T706A:p.S236T"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.914001669	1	0.9996381	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21635537	12A2p6	cell line	sgMsh2	21635537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	83	0	0	NA	exonic	Smarca4	synonymous SNV	"Smarca4:NM_001174078:exon4:c.T357C:p.G119G,Smarca4:NM_001174079:exon4:c.T357C:p.G119G,Smarca4:NM_001357764:exon4:c.T357C:p.G119G,Smarca4:NM_011417:exon4:c.T357C:p.G119G"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999859	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	21675158	12A2p6	cell line	sgMsh2	21675158	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.309	64	0	0	NA	exonic	Smarca4	frameshift insertion	"Smarca4:NM_001174078:exon25:c.3475dupG:p.L1161Afs*8,Smarca4:NM_001174079:exon25:c.3475dupG:p.L1161Afs*8,Smarca4:NM_001357764:exon25:c.3475dupG:p.L1161Afs*8,Smarca4:NM_011417:exon25:c.3475dupG:p.L1161Afs*8"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTG	frameshift	G	5	GGGGG	1
SSC_p20	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	54	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997658	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	21775738	12A2p6	cell line	sgMsh2	21775738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	49	0	0	NA	exonic	Kank2	nonsynonymous SNV	Kank2:NM_145611:exon7:c.A1787G:p.Y596C	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21935589	12A2p6	cell line	sgMsh2	21935589	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	106	0	0	NA	exonic	Ccdc159	nonsynonymous SNV	"Ccdc159:NM_001164614:exon12:c.T1192A:p.W398R,Ccdc159:NM_025977:exon12:c.T1168A:p.W390R"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21959360	12A2p6	cell line	sgMsh2	21959360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	117	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon8:c.A1223C:p.D408A	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	21962265	12A2p6	cell line	sgMsh2	21962265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	38	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon2:c.T187C:p.F63L	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9988956	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	22073544	12A2p6	cell line	sgMsh2	22073544	A	C	SNV	Mutect2;Vardict	2	0.035	154	0	0	NA	exonic	Ecsit	nonsynonymous SNV	"Ecsit:NM_001253898:exon6:c.T827G:p.L276R,Ecsit:NM_001253897:exon7:c.T827G:p.L276R,Ecsit:NM_012029:exon7:c.T827G:p.L276R"	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	1	0.206387474	3	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	22108218	12A2p6	cell line	sgMsh2	22108218	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	65	0	0	NA	exonic	Cnn1	nonsynonymous SNV	Cnn1:NM_009922:exon7:c.A881G:p.Y294C	9qA3	chr9-20655102-22114234	6	3	3	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999194	TAC	nonsynonymous	ACT	8	ACTACTAC	NA
SSC_p20	chr9	22127235	12A2p6	cell line	sgMsh2	22127235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	122	0	0	NA	exonic	Acp5	nonsynonymous SNV	"Acp5:NM_001102404:exon5:c.T769C:p.Y257H,Acp5:NM_001102405:exon5:c.T769C:p.Y257H,Acp5:NM_007388:exon5:c.T769C:p.Y257H"	9qA3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999997	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	22236288	12A2p6	cell line	sgMsh2	22236288	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	109	0	0	NA	exonic	Zfp809	nonsynonymous SNV	"Zfp809:NM_001164624:exon3:c.C217A:p.L73I,Zfp809:NM_172763:exon3:c.C217A:p.L73I"	9qA3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.825549895	1	0.9960146	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	22364010	12A2p6	cell line	sgMsh2	22364010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	144	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon9:c.T1598G:p.L533R	9qA3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	24625670	12A2p6	cell line	sgMsh2	24625670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	140	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.A455G:p.N152S	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	26780766	12A2p6	cell line	sgMsh2	26780766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	118	0	0	NA	exonic	Glb1l2	nonsynonymous SNV	"Glb1l2:NM_001310768:exon6:c.T559C:p.Y187H,Glb1l2:NM_153803:exon7:c.T607C:p.Y203H"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	178	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.866827389	1	0.9999627	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
SSC_p20	chr9	27322853	12A2p6	cell line	sgMsh2	27322853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	88	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384263:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384264:exon10:c.T1261C:p.Y421H"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999913	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	44	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9993825	TCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	30902118	12A2p6	cell line	sgMsh2	30902118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	109	0	0	NA	exonic	Adamts15	nonsynonymous SNV	"Adamts15:NM_001024139:exon8:c.C2750T:p.P917L,Adamts15:NM_001329420:exon8:c.C1757T:p.P586L"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999989	CGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	31325659	12A2p6	cell line	sgMsh2	31325659	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	125	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368845:exon4:c.C327T:p.S109S,Prdm10:NM_001368846:exon4:c.C327T:p.S109S,Prdm10:NM_199315:exon5:c.C327T:p.S109S"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	CCG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	115	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999994	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	32317590	12A2p6	cell line	sgMsh2	32317590	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	44	0	0	NA	exonic	Kcnj5	frameshift deletion	Kcnj5:NM_010605:exon4:c.1250delG:p.G417Afs*63	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
SSC_p20	chr9	35270018	12A2p6	cell line	sgMsh2	35270018	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	111	0	0	NA	exonic	Rpusd4	nonsynonymous SNV	Rpusd4:NM_028040:exon3:c.A409C:p.M137L	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.872724174	1	0.9995967	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	35562004	12A2p6	cell line	sgMsh2	35562004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	173	0	0	NA	exonic	Hyls1	nonsynonymous SNV	Hyls1:NM_029762:exon4:c.A115G:p.T39A	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.28E-09	GTA	nonsynonymous	AGC	9	AGCAGCAGC	NA
SSC_p20	chr9	36743507	12A2p6	cell line	sgMsh2	36743507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	102	0	0	NA	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon13:c.T1463A:p.I488N	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	37423188	12A2p6	cell line	sgMsh2	37423188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	45	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon12:c.A1945G:p.T649A	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994396	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	108	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999988	TAT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	253	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	179	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	38026663	12A2p6	cell line	sgMsh2	38026663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	236	0	0	NA	exonic	Olfr883	nonsynonymous SNV	Olfr883:NM_146419:exon1:c.T856C:p.F286L	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38047923	12A2p6	cell line	sgMsh2	38047923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	403	0	0	NA	exonic	Olfr884	nonsynonymous SNV	Olfr884:NM_001011798:exon1:c.T700G:p.S234A	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	239	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38349215	12A2p6	cell line	sgMsh2	38349215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	321	0	0	NA	exonic	Olfr898	nonsynonymous SNV	Olfr898:NM_146871:exon1:c.C131A:p.T44N	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	338	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38368241	12A2p6	cell line	sgMsh2	38368241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.C694T:p.L232F,Olfr250:NM_207552:exon1:c.C694T:p.L232F"	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.07E-09	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38378257	12A2p6	cell line	sgMsh2	38378257	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.193	225	0	0	NA	exonic	Olfr251;Olfr900	synonymous SNV	"Olfr900:NM_146874:exon1:c.C375A:p.A125A,Olfr251:NM_207553:exon1:c.C375A:p.A125A"	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.01E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38430355	12A2p6	cell line	sgMsh2	38430355	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	360	0	0	NA	exonic	Olfr901	synonymous SNV	Olfr901:NM_001011806:exon1:c.C72A:p.L24L	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TCC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38488319	12A2p6	cell line	sgMsh2	38488319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	151	0	0	NA	exonic	Olfr906	nonsynonymous SNV	Olfr906:NM_146803:exon1:c.T289C:p.C97R	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.02E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38498985	12A2p6	cell line	sgMsh2	38498985	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.24	249	0	0	NA	exonic	Olfr907	frameshift insertion	Olfr907:NM_146805:exon1:c.316dupT:p.A108Cfs*2	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CCT	frameshift	T	5	TTTTT	1
SSC_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	249	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38539328	12A2p6	cell line	sgMsh2	38539328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	292	0	0	NA	exonic	Olfr910	synonymous SNV	Olfr910:NM_146811:exon2:c.T432C:p.L144L	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38657580	12A2p6	cell line	sgMsh2	38657580	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	100	0	0	NA	exonic	Olfr916	stopgain	Olfr916:NM_146784:exon1:c.G811T:p.G271X	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999973	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38657680	12A2p6	cell line	sgMsh2	38657680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	165	0	0	NA	exonic	Olfr916	synonymous SNV	Olfr916:NM_146784:exon1:c.T711G:p.A237A	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	5.95E-09	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38657693	12A2p6	cell line	sgMsh2	38657693	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	167	0	0	NA	exonic	Olfr916	nonsynonymous SNV	Olfr916:NM_146784:exon1:c.G698A:p.G233D	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.08E-09	GCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38775472	12A2p6	cell line	sgMsh2	38775472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	122	0	0	NA	exonic	Olfr921	synonymous SNV	Olfr921:NM_146782:exon3:c.T216C:p.C72C	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	38848258	12A2p6	cell line	sgMsh2	38848258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	172	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.T143C:p.I48T	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.51E-09	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38855422	12A2p6	cell line	sgMsh2	38855422	A	G	SNV	Mutect2;Vardict	2	0.019	331	0	0	NA	exonic	Olfr26	nonsynonymous SNV	Olfr26:NM_146783:exon1:c.A359G:p.Y120C	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.112038914	3	1	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	248	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	39184623	12A2p6	cell line	sgMsh2	39184623	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	351	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.T444G:p.I148M	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	264	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39484525	12A2p6	cell line	sgMsh2	39484525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	309	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A727G:p.T243A	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39623642	12A2p6	cell line	sgMsh2	39623642	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	275	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.A518C:p.E173A	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GAG	nonsynonymous	GTGAG	10	GTGAGGTGAG	NA
SSC_p20	chr9	39719449	12A2p6	cell line	sgMsh2	39719449	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	456	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.C221A:p.S74Y	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39737754	12A2p6	cell line	sgMsh2	39737754	A	-	Deletion	Strelka2;Vardict	2	0.3019	106	0	0	NA	exonic	Olfr150	stoploss	Olfr150:NM_146609:exon1:c.938delA:p.*313del	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	A	10	AAAAAAAAAA	-1
SSC_p20	chr9	39819815	12A2p6	cell line	sgMsh2	39819815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	319	0	0	NA	exonic	Olfr970	nonsynonymous SNV	Olfr970:NM_146611:exon1:c.A175G:p.M59V	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39839779	12A2p6	cell line	sgMsh2	39839779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	362	0	0	NA	exonic	Olfr971	nonsynonymous SNV	Olfr971:NM_146614:exon1:c.T344C:p.L115S	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	39910269	12A2p6	cell line	sgMsh2	39910269	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	275	0	0	NA	exonic	Olfr229	synonymous SNV	Olfr229:NM_146613:exon1:c.A465C:p.G155G	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	42377887	12A2p6	cell line	sgMsh2	42377887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	74	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon8:c.T1381C:p.C461R,Tecta:NM_009347:exon8:c.T1381C:p.C461R,Tecta:NM_001378602:exon9:c.T1381C:p.C461R"	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999663	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	42415852	12A2p6	cell line	sgMsh2	42415852	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	69	0	0	NA	exonic	Tbcel	frameshift deletion	"Tbcel:NM_001378604:exon7:c.879delT:p.F293Lfs*31,Tbcel:NM_001357656:exon8:c.1254delT:p.F418Lfs*31,Tbcel:NM_001357657:exon8:c.1254delT:p.F418Lfs*31,Tbcel:NM_173038:exon8:c.1254delT:p.F418Lfs*31"	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	148	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	2.67E-08	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	44333095	12A2p6	cell line	sgMsh2	44333095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	144	0	0	NA	exonic	Dpagt1	nonsynonymous SNV	"Dpagt1:NM_001364464:exon8:c.A879C:p.Q293H,Dpagt1:NM_007875:exon9:c.A1206C:p.Q402H"	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	232	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
SSC_p20	chr9	44506456	12A2p6	cell line	sgMsh2	44506456	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	66	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.T1590A:p.D530E,Bcl9l:NM_030256:exon7:c.T1701A:p.D567E"	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999268	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	57	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998249	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	44823374	12A2p6	cell line	sgMsh2	44823374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	164	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6170G:p.Y2057C	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	6.45E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	44848628	12A2p6	cell line	sgMsh2	44848628	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	134	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.T1923G:p.I641M	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	45002239	12A2p6	cell line	sgMsh2	45002239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	112	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon5:c.A197T:p.H66L	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999992	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	139	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	45672814	12A2p6	cell line	sgMsh2	45672814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	67	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon7:c.A1402G:p.S468G	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999336	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	46196067	12A2p6	cell line	sgMsh2	46196067	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	73	0	0	NA	exonic	Sik3	nonsynonymous SNV	Sik3:NM_027498:exon11:c.G1401T:p.R467S	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999629	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998691	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	46291342	12A2p6	cell line	sgMsh2	46291342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	185	0	0	NA	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon6:c.T1346C:p.L449S	9qA5.2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.71E-09	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	49507013	12A2p6	cell line	sgMsh2	49507013	T	-	Deletion	Mutect2;Vardict	2	0.073	68	0	0	NA	exonic	Ncam1	frameshift deletion	Ncam1:NM_001113204:exon18:c.3067delA:p.M1023Wfs*57	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.430465302	NA	NA	ATT	frameshift	T	5	TTTTT	-1
SSC_p20	chr9	50541135	12A2p6	cell line	sgMsh2	50541135	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	64	0	0	NA	exonic	Bco2	frameshift deletion	"Bco2:NM_001359610:exon6:c.632delA:p.K211Rfs*22,Bco2:NM_133217:exon6:c.632delA:p.K211Rfs*22"	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	TCTT	9	TCTTTCTTT	-1
SSC_p20	chr9	50638059	12A2p6	cell line	sgMsh2	50638059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	92	0	0	NA	exonic	Dlat	synonymous SNV	Dlat:NM_145614:exon12:c.T1524C:p.V508V	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999941	CAA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	50695511	12A2p6	cell line	sgMsh2	50695511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	126	0	0	NA	exonic	Dixdc1	nonsynonymous SNV	"Dixdc1:NM_001311069:exon6:c.T804G:p.D268E,Dixdc1:NM_001374656:exon6:c.T729G:p.D243E,Dixdc1:NM_178118:exon6:c.T807G:p.D269E"	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	50895761	12A2p6	cell line	sgMsh2	50895761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	46	0	0	NA	exonic	Sik2	nonsynonymous SNV	Sik2:NM_178710:exon15:c.A2348G:p.E783G	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994913	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	51101073	12A2p6	cell line	sgMsh2	51101073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	90	0	0	NA	exonic	Hoatz	synonymous SNV	Hoatz:NM_177702:exon2:c.C246A:p.P82P	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	AGG	synonymous	AAAGGG	12	AAAGGGAAAGGG	NA
SSC_p20	chr9	54451628	12A2p6	cell line	sgMsh2	54451629	CT	-	Deletion	Strelka2;Vardict	2	0.25	108	0	0	NA	exonic	Dmxl2	frameshift deletion	Dmxl2:NM_172771:exon10:c.1318_1319del:p.R440Gfs*8	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CCT	frameshift	CT	11	CTCTCTCTCTC	-2
SSC_p20	chr9	54628565	12A2p6	cell line	sgMsh2	54628565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	141	0	0	NA	exonic	Acsbg1	synonymous SNV	Acsbg1:NM_053178:exon3:c.T285C:p.C95C	9qA5.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.17E-08	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	54865393	12A2p6	cell line	sgMsh2	54865393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	170	0	0	NA	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon2:c.T106C:p.Y36H	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.05E-09	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	55035286	12A2p6	cell line	sgMsh2	55035286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	152	0	0	NA	exonic	Chrnb4	nonsynonymous SNV	Chrnb4:NM_148944:exon5:c.A703G:p.T235A	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	1.85E-08	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	55859035	12A2p6	cell line	sgMsh2	55859035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	115	0	0	NA	exonic	Scaper	nonsynonymous SNV	"Scaper:NM_001081341:exon13:c.T1456C:p.S486P,Scaper:NM_001357652:exon13:c.T1438C:p.S480P"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.849137034	1	0.9989083	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	56042647	12A2p6	cell line	sgMsh2	56042647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	0	0	NA	exonic	Rcn2	nonsynonymous SNV	"Rcn2:NM_001278274:exon2:c.A226G:p.I76V,Rcn2:NM_011992:exon2:c.A226G:p.I76V"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	146	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.22E-08	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
SSC_p20	chr9	56926737	12A2p6	cell line	sgMsh2	56926737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	61	0	0	NA	exonic	Snx33	nonsynonymous SNV	Snx33:NM_175483:exon1:c.A47G:p.K16R	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9998812	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	58086545	12A2p6	cell line	sgMsh2	58086545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	96	0	0	NA	exonic	Ccdc33	nonsynonymous SNV	"Ccdc33:NM_001311085:exon3:c.A317G:p.E106G,Ccdc33:NM_029212:exon3:c.A317G:p.E106G,Ccdc33:NM_001166282:exon5:c.A1052G:p.E351G"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.999996	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	58362912	12A2p6	cell line	sgMsh2	58362912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	103	0	0	NA	exonic	Tbc1d21	nonsynonymous SNV	"Tbc1d21:NM_001357455:exon6:c.A482G:p.Y161C,Tbc1d21:NM_028854:exon6:c.A482G:p.Y161C"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	104	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	135	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999999	GGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	60056985	12A2p6	cell line	sgMsh2	60056985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	106	0	0	NA	exonic	Thsd4	nonsynonymous SNV	"Thsd4:NM_172444:exon2:c.A143G:p.N48S,Thsd4:NM_001040426:exon8:c.A1223G:p.N408S"	9qB	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999985	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	64924524	12A2p6	cell line	sgMsh2	64924524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	142	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon10:c.T3290C:p.M1097T	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.71E-08	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	65215569	12A2p6	cell line	sgMsh2	65215569	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	30	0	0	NA	exonic	Parp16	nonsynonymous SNV	Parp16:NM_177460:exon2:c.C111G:p.D37E	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9976039	ACT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	65398606	12A2p6	cell line	sgMsh2	65398606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	55	0	0	NA	exonic	Rasl12	synonymous SNV	"Rasl12:NM_001033158:exon1:c.G42A:p.P14P,Rasl12:NM_001162923:exon1:c.G42A:p.P14P"	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9997874	CGC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	65408335	12A2p6	cell line	sgMsh2	65408335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	109	0	0	NA	exonic	Rasl12	nonsynonymous SNV	"Rasl12:NM_001033158:exon4:c.A260G:p.Y87C,Rasl12:NM_001162923:exon4:c.A260G:p.Y87C"	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.955279164	1	0.9999908	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	65502263	12A2p6	cell line	sgMsh2	65502263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon14:c.G1390A:p.G464S	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9994396	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	65509652	12A2p6	cell line	sgMsh2	65509652	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	75	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon6:c.G534T:p.K178N	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.672233486	2	0.5421292	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	67898684	12A2p6	cell line	sgMsh2	67898685	TG	CA	DBS	Mutect2;Vardict	2	0.181	61	0	0	NA	exonic	Vps13c	nonframeshift substitution	Vps13c:NM_177184:exon24:c.2339_2340CA:p.L780P	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	67919278	12A2p6	cell line	sgMsh2	67919278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	138	0	0	NA	exonic	Vps13c	synonymous SNV	Vps13c:NM_177184:exon38:c.T4200C:p.D1400D	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	60	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998691	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	67964084	12A2p6	cell line	sgMsh2	67964084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	209	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon70:c.T9635C:p.M3212T	9qC	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.07E-09	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	70341998	12A2p6	cell line	sgMsh2	70341998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	76	0	0	NA	exonic	Myo1e	nonsynonymous SNV	Myo1e:NM_181072:exon14:c.T1379C:p.M460T	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999723	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	70581343	12A2p6	cell line	sgMsh2	70581343	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	117	0	0	NA	exonic	Sltm	frameshift deletion	"Sltm:NM_001357911:exon14:c.1546delA:p.R518Efs*15,Sltm:NM_025690:exon14:c.1774delA:p.R594Efs*15,Sltm:NM_026337:exon14:c.1720delA:p.R576Efs*15"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	70607522	12A2p6	cell line	sgMsh2	70607522	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.19	80	0	0	NA	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon8:c.A1613G:p.Y538C,Mindy2:NM_172772:exon8:c.A1613G:p.Y538C"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	72331408	12A2p6	cell line	sgMsh2	72331408	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	168	0	0	NA	exonic	Zfp280d	frameshift deletion	"Zfp280d:NM_001311105:exon16:c.2005delA:p.A670Pfs*1,Zfp280d:NM_146224:exon16:c.2005delA:p.A670Pfs*2"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
SSC_p20	chr9	72593356	12A2p6	cell line	sgMsh2	72593356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	112	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon4:c.T397C:p.Y133H	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	72617068	12A2p6	cell line	sgMsh2	72617068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	144	0	0	NA	exonic	Rfx7	synonymous SNV	Rfx7:NM_001033536:exon9:c.T1539C:p.N513N	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.89E-08	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	72747140	12A2p6	cell line	sgMsh2	72747140	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	176	0	0	NA	exonic	Nedd4	nonsynonymous SNV	"Nedd4:NM_001357998:exon24:c.A3536T:p.D1179V,Nedd4:NM_010890:exon29:c.A2576T:p.D859V"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.919898454	1	0.9999993	GAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	73931935	12A2p6	cell line	sgMsh2	73931935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	152	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.T1633C:p.F545L	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.85E-08	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	74218759	12A2p6	cell line	sgMsh2	74218759	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	79	0	0	NA	exonic	Wdr72	synonymous SNV	Wdr72:NM_001033500:exon18:c.T3171G:p.S1057S	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999793	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	75008893	12A2p6	cell line	sgMsh2	75008893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	140	0	0	NA	exonic	Fam214a	nonsynonymous SNV	"Fam214a:NM_153584:exon5:c.A794G:p.Y265C,Fam214a:NM_001113283:exon6:c.A773G:p.Y258C,Fam214a:NM_001359816:exon6:c.A773G:p.Y258C"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	75337355	12A2p6	cell line	sgMsh2	75337355	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	115	0	0	NA	exonic	Gnb5	nonsynonymous SNV	"Gnb5:NM_138719:exon7:c.A730G:p.S244G,Gnb5:NM_010313:exon9:c.A856G:p.S286G"	9qD	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	78064712	12A2p6	cell line	sgMsh2	78064712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	183	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon6:c.T934G:p.Y312D	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.86E-09	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	180	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	TTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	78688762	12A2p6	cell line	sgMsh2	78688762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	102	0	0	NA	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.T2376G:p.F792L	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999978	TTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	79620062	12A2p6	cell line	sgMsh2	79620062	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	23	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon52:c.T7985A:p.V2662D	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9952866	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	79697478	12A2p6	cell line	sgMsh2	79697478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	49	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon11:c.T2087C:p.L696P	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996197	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	79776225	12A2p6	cell line	sgMsh2	79776225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	79	0	0	NA	exonic	Tmem30a	nonsynonymous SNV	Tmem30a:NM_133718:exon4:c.T469C:p.C157R	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999793	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	80140847	12A2p6	cell line	sgMsh2	80140847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	146	0	0	NA	exonic	Senp6	synonymous SNV	"Senp6:NM_146003:exon20:c.T2907C:p.A969A,Senp6:NM_001311110:exon21:c.T2928C:p.A976A"	9qE1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	3.22E-08	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	82876810	12A2p6	cell line	sgMsh2	82876810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	44	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon37:c.T4286C:p.L1429P	9qE2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9993825	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	130	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	84010263	12A2p6	cell line	sgMsh2	84010263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	114	0	0	NA	exonic	Bckdhb	nonsynonymous SNV	"Bckdhb:NM_001305935:exon7:c.T746C:p.V249A,Bckdhb:NM_199195:exon7:c.T542C:p.V181A"	9qE2	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999993	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697206	TT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	36	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1955_1956del:p.K652Tfs*16,Ibtk:NM_001081282:exon26:c.3635_3636del:p.K1212Tfs*16"	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-2
SSC_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	80	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	TAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	86570353	12A2p6	cell line	sgMsh2	86570353	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	80	0	0	NA	exonic	Pgm3	nonsynonymous SNV	"Pgm3:NM_001163746:exon2:c.G53T:p.G18V,Pgm3:NM_028352:exon2:c.G53T:p.G18V"	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999812	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	88367345	12A2p6	cell line	sgMsh2	88367345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	125	0	0	NA	exonic	Nt5e	nonsynonymous SNV	Nt5e:NM_011851:exon7:c.A1331G:p.Y444C	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	88401974	12A2p6	cell line	sgMsh2	88401974	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	158	0	0	NA	exonic	Snx14	nonsynonymous SNV	"Snx14:NM_001359958:exon15:c.T1394G:p.F465C,Snx14:NM_172926:exon15:c.T1394G:p.F465C"	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.08E-08	AAA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	89994768	12A2p6	cell line	sgMsh2	89994768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	81	0	0	NA	exonic	Rasgrf1	nonsynonymous SNV	"Rasgrf1:NM_001357743:exon15:c.C2179T:p.P727S,Rasgrf1:NM_011245:exon15:c.C2185T:p.P729S"	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999829	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	90218980	12A2p6	cell line	sgMsh2	90218980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	113	0	0	NA	exonic	Tbc1d2b	synonymous SNV	Tbc1d2b:NM_194334:exon9:c.A1956G:p.A652A	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	90228938	12A2p6	cell line	sgMsh2	90228938	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	50	0	0	NA	exonic	Tbc1d2b	stopgain	Tbc1d2b:NM_194334:exon4:c.G847T:p.G283X	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9996548	CCT	nonsynonymous	AC	10	ACACACACAC	NA
SSC_p20	chr9	90249800	12A2p6	cell line	sgMsh2	90249800	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	44	0	0	NA	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon2:c.G505T:p.D169Y	9qE3.1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.961175949	1	0.9987142	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	95511823	12A2p6	cell line	sgMsh2	95511823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	253	0	0	NA	exonic	U2surp	synonymous SNV	"U2surp:NM_001114977:exon1:c.T39C:p.S13S,U2surp:NM_001357974:exon1:c.T39C:p.S13S,U2surp:NM_001357975:exon1:c.T39C:p.S13S,U2surp:NM_026476:exon1:c.T39C:p.S13S"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	95716147	12A2p6	cell line	sgMsh2	95716147	T	-	Deletion	Mutect2;Vardict	2	0.061	87	0	0	NA	exonic	Trpc1	frameshift deletion	"Trpc1:NM_001311123:exon8:c.1415delA:p.N472Tfs*2,Trpc1:NM_011643:exon9:c.1517delA:p.N506Tfs*2"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.359703883	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chr9	95765786	12A2p6	cell line	sgMsh2	95765786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	128	0	0	NA	exonic	Pls1	nonsynonymous SNV	Pls1:NM_001033210:exon12:c.G1279A:p.V427M	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	ACC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	95970797	12A2p6	cell line	sgMsh2	95970797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.178	180	0	0	NA	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon6:c.A696G:p.G232G,Xrn1:NM_011916:exon6:c.A696G:p.G232G"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.16E-09	GAA	synonymous	A	8	AAAAAAAA	NA
SSC_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999998	GAA	nonsynonymous	T	5	TTTTT	NA
SSC_p20	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.1929	140	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
SSC_p20	chr9	96340286	12A2p6	cell line	sgMsh2	96340286	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	0	0	NA	exonic	Atp1b3	synonymous SNV	"Atp1b3:NM_001357212:exon3:c.C339A:p.S113S,Atp1b3:NM_007502:exon4:c.C447A:p.S149S,Atp1b3:NM_001357213:exon5:c.C276A:p.S92S"	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999453	AGG	synonymous	CAAG	8	CAAGCAAG	NA
SSC_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	56	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	101211534	12A2p6	cell line	sgMsh2	101211534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	146	0	0	NA	exonic	Ppp2r3a	nonsynonymous SNV	Ppp2r3a:NM_001161362:exon2:c.T1589C:p.L530P	9qE4	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.22E-08	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	101984182	12A2p6	cell line	sgMsh2	101984182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	92	0	0	NA	exonic	Ephb1	synonymous SNV	Ephb1:NM_173447:exon10:c.C1782T:p.Y594Y	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999941	TGT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	103277478	12A2p6	cell line	sgMsh2	103277478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	61	0	0	NA	exonic	1300017J02Rik	nonsynonymous SNV	1300017J02Rik:NM_027918:exon5:c.T613G:p.F205V	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9998812	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	103489246	12A2p6	cell line	sgMsh2	103489246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	99	0	0	NA	exonic	Tmem108	synonymous SNV	"Tmem108:NM_001359465:exon4:c.C1545T:p.Y515Y,Tmem108:NM_178638:exon5:c.C1545T:p.Y515Y"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999997	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	104011626	12A2p6	cell line	sgMsh2	104011626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	81	0	0	NA	exonic	Nphp3	nonsynonymous SNV	"Nphp3:NM_028721:exon6:c.T971C:p.M324T,Nphp3:NM_172460:exon6:c.T971C:p.M324T"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999829	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	104031988	12A2p6	cell line	sgMsh2	104031988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	0	0	NA	exonic	Nphp3	nonsynonymous SNV	Nphp3:NM_028721:exon17:c.T2396G:p.V799G	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.999742	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	104060299	12A2p6	cell line	sgMsh2	104060299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	289	0	0	NA	exonic	Uba5	synonymous SNV	Uba5:NM_025692:exon3:c.T210C:p.R70R	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	104076339	12A2p6	cell line	sgMsh2	104076339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	98	0	0	NA	exonic	Acad11	nonsynonymous SNV	Acad11:NM_175324:exon4:c.T379C:p.F127L	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999967	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	104176762	12A2p6	cell line	sgMsh2	104176762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon42:c.A4894G:p.M1632V,Dnajc13:NM_001359740:exon43:c.A4909G:p.M1637V"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	1.28E-08	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	105026705	12A2p6	cell line	sgMsh2	105026705	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon15:c.A1359T:p.Q453H,Cpne4:NM_001378996:exon15:c.A1329T:p.Q443H,Cpne4:NM_028719:exon15:c.A1305T:p.Q435H"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999929	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	105130464	12A2p6	cell line	sgMsh2	105130464	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	65	0	0	NA	exonic	Nudt16	frameshift deletion	Nudt16:NM_029385:exon3:c.455delA:p.E152Gfs*20	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	NA	NA	CTC	frameshift	NA	NA	NA	-1
SSC_p20	chr9	105774746	12A2p6	cell line	sgMsh2	105774746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	155	0	0	NA	exonic	Col6a6	frameshift deletion	"Col6a6:NM_001102607:exon8:c.3065delT:p.L1022Wfs*14,Col6a6:NM_172927:exon8:c.3065delT:p.L1022Wfs*16"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	105782429	12A2p6	cell line	sgMsh2	105782429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	67	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon5:c.T1316C:p.L439P,Col6a6:NM_172927:exon5:c.T1316C:p.L439P"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999336	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	105783774	12A2p6	cell line	sgMsh2	105783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	84	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon4:c.T1135C:p.S379P,Col6a6:NM_172927:exon4:c.T1135C:p.S379P"	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999872	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	167	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	5.08E-09	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106019449	12A2p6	cell line	sgMsh2	106019449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	89	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon29:c.T5166C:p.P1722P	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999921	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	106062941	12A2p6	cell line	sgMsh2	106062941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	76	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon9:c.T3789C:p.V1263V	9qF1	chr9-22126712-106188919	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	GAA	synonymous	NA	NA	NA	NA
SSC_p20	chr9	106198718	12A2p6	cell line	sgMsh2	106198718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	89	0	0	NA	exonic	Ppm1m	nonsynonymous SNV	Ppm1m:NM_198931:exon1:c.C10A:p.P4T	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999921	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106226140	12A2p6	cell line	sgMsh2	106226140	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	79	0	0	NA	exonic	Tlr9	nonsynonymous SNV	Tlr9:NM_031178:exon2:c.G2629A:p.D877N	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999793	CGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	50	0	0	NA	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9996548	TAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106349769	12A2p6	cell line	sgMsh2	106349769	A	G	SNV	Mutect2;Vardict	2	0.043	100	0	0	NA	exonic	Poc1a	nonsynonymous SNV	Poc1a:NM_027354:exon11:c.A1207G:p.T403A	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	0.253561753	3	0.9984965	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106473724	12A2p6	cell line	sgMsh2	106473724	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	50	0	0	NA	exonic	Parp3	nonsynonymous SNV	"Parp3:NM_001311150:exon7:c.G968T:p.R323M,Parp3:NM_145619:exon7:c.G953T:p.R318M"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9996548	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	106659064	12A2p6	cell line	sgMsh2	106659064	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	42	0	0	NA	exonic	Tex264	frameshift deletion	"Tex264:NM_001081654:exon6:c.893delC:p.P298Lfs*24,Tex264:NM_001286498:exon6:c.893delC:p.P298Lfs*24,Tex264:NM_011573:exon6:c.893delC:p.P298Lfs*24"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
SSC_p20	chr9	107258437	12A2p6	cell line	sgMsh2	107258437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	0	0	NA	exonic	Mapkapk3	nonsynonymous SNV	Mapkapk3:NM_178907:exon8:c.C728A:p.P243H	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999268	GGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	107331516	12A2p6	cell line	sgMsh2	107331516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	106	0	0	NA	exonic	Hemk1	nonsynonymous SNV	Hemk1:NM_133984:exon5:c.G481A:p.G161S	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999985	CCA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	107572247	12A2p6	cell line	sgMsh2	107572247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	54	0	0	NA	exonic	Hyal2	nonsynonymous SNV	Hyal2:NM_010489:exon4:c.A1201G:p.T401A	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9997658	TAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chr9	107602013	12A2p6	cell line	sgMsh2	107602013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	97	0	0	NA	exonic	Sema3b	nonsynonymous SNV	"Sema3b:NM_009153:exon8:c.G757A:p.A253T,Sema3b:NM_001291539:exon9:c.G757A:p.A253T,Sema3b:NM_001042779:exon10:c.G757A:p.A253T,Sema3b:NM_001291537:exon10:c.G757A:p.A253T,Sema3b:NM_001291538:exon10:c.G757A:p.A253T"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999964	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	107705485	12A2p6	cell line	sgMsh2	107705485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	64	0	0	NA	exonic	Sema3f	nonsynonymous SNV	"Sema3f:NM_001311151:exon1:c.A58C:p.T20P,Sema3f:NM_001379496:exon2:c.A58C:p.T20P,Sema3f:NM_011349:exon2:c.A58C:p.T20P"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	0.984763089	1	0.999865	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	107996250	12A2p6	cell line	sgMsh2	107996250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	210	0	0	NA	exonic	Cdhr4	synonymous SNV	Cdhr4:NM_001378391:exon10:c.T1180C:p.L394L	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	0.83144668	1	0.9997456	GTT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	108068579	12A2p6	cell line	sgMsh2	108068579	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	61	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon13:c.C1007A:p.A336D,Rnf123:NM_032543:exon13:c.C1007A:p.A336D"	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9998812	AGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	122	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999997	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	108139239	12A2p6	cell line	sgMsh2	108139239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	138	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon2:c.A572G:p.H191R	9qF1	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	108463937	12A2p6	cell line	sgMsh2	108463937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	113	0	0	NA	exonic	Ccdc71	synonymous SNV	"Ccdc71:NM_001378930:exon2:c.A948G:p.K316K,Ccdc71:NM_001378931:exon2:c.A948G:p.K316K,Ccdc71:NM_133744:exon2:c.A948G:p.K316K"	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	100	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
SSC_p20	chr9	108566071	12A2p6	cell line	sgMsh2	108566071	T	C	SNV	Mutect2;Vardict	2	0.032	154	0	0	NA	exonic	Ndufaf3	nonsynonymous SNV	Ndufaf3:NM_023247:exon5:c.A446G:p.N149S	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	0.188697119	3	3.38E-08	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	108961780	12A2p6	cell line	sgMsh2	108961780	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon25:c.C3143T:p.A1048V	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	108	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999988	GTG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	109623537	12A2p6	cell line	sgMsh2	109623537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	217	0	0	NA	exonic	Fbxw24	nonsynonymous SNV	Fbxw24:NM_001013776:exon4:c.T389C:p.I130T	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	1.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	110087566	12A2p6	cell line	sgMsh2	110087566	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	86	0	0	NA	exonic	Dhx30	nonsynonymous SNV	"Dhx30:NM_001252683:exon8:c.G1880A:p.R627H,Dhx30:NM_133347:exon11:c.G1862A:p.R621H,Dhx30:NM_001252682:exon12:c.G1793A:p.R598H"	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	0.342013528	3	0.5469594	GCG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	115	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999994	GCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	110547379	12A2p6	cell line	sgMsh2	110547379	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T261A:p.N87K	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	0.9999905	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	110551221	12A2p6	cell line	sgMsh2	110551221	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	114	0	0	NA	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon3:c.4103delA:p.N1370Mfs*2	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chr9	110622110	12A2p6	cell line	sgMsh2	110622110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	201	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A189G:p.T63T	9qF2	chr9-106195029-110944556	6	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	1	1	1.15E-09	CTG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	112182812	12A2p6	cell line	sgMsh2	112182812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	47	0	0	NA	exonic	Arpp21	stoploss	"Arpp21:NM_001177615:exon5:c.A267G:p.X89W,Arpp21:NM_001362008:exon5:c.A267G:p.X89W,Arpp21:NM_001362009:exon5:c.A267G:p.X89W,Arpp21:NM_001362000:exon6:c.A267G:p.X89W,Arpp21:NM_001362001:exon6:c.A267G:p.X89W,Arpp21:NM_001362002:exon6:c.A267G:p.X89W,Arpp21:NM_001362005:exon6:c.A267G:p.X89W,Arpp21:NM_001362006:exon6:c.A267G:p.X89W,Arpp21:NM_001362007:exon6:c.A267G:p.X89W,Arpp21:NM_028755:exon6:c.A267G:p.X89W,Arpp21:NM_001177620:exon7:c.A267G:p.X89W,Arpp21:NM_001362003:exon7:c.A267G:p.X89W,Arpp21:NM_001362004:exon7:c.A267G:p.X89W"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9995383	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	114492687	12A2p6	cell line	sgMsh2	114492687	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	144	0	0	NA	exonic	Ccr4	stopgain	Ccr4:NM_009916:exon2:c.G309A:p.W103X	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.212284259	3	0.9999989	CCC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	115216857	12A2p6	cell line	sgMsh2	115216857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	124	0	0	NA	exonic	Osbpl10	synonymous SNV	Osbpl10:NM_148958:exon8:c.T1560C:p.D520D	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999997	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chr9	118484791	12A2p6	cell line	sgMsh2	118484791	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	95	0	0	NA	exonic	Eomes	nonsynonymous SNV	"Eomes:NM_001164789:exon6:c.A1846T:p.I616F,Eomes:NM_010136:exon6:c.A1903T:p.I635F"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999956	GAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	118530314	12A2p6	cell line	sgMsh2	118530314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	178	0	0	NA	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon5:c.A581G:p.K194R	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	2.40E-09	AAG	nonsynonymous	A	5	AAAAA	NA
SSC_p20	chr9	118557612	12A2p6	cell line	sgMsh2	118557612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	125	0	0	NA	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon15:c.A3801G:p.Q1267Q	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999998	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	84	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999872	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	119609773	12A2p6	cell line	sgMsh2	119609773	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	172	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon28:c.C5029A:p.P1677T,Scn10a:NM_009134:exon28:c.C5026A:p.P1676T"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	3.51E-09	GGG	nonsynonymous	G	5	GGGGG	NA
SSC_p20	chr9	119664827	12A2p6	cell line	sgMsh2	119664827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1412G:p.D471G,Scn10a:NM_009134:exon11:c.A1412G:p.D471G"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999992	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	119664849	12A2p6	cell line	sgMsh2	119664849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1390G:p.R464G,Scn10a:NM_009134:exon11:c.A1390G:p.R464G"	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	70	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	0.9999504	CCC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	119958066	12A2p6	cell line	sgMsh2	119958066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	170	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon16:c.A2138G:p.E713G	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	4.05E-09	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	119972717	12A2p6	cell line	sgMsh2	119972717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	76	0	0	NA	exonic	Csrnp1	synonymous SNV	"Csrnp1:NM_001357560:exon5:c.T1275C:p.G425G,Csrnp1:NM_001357561:exon5:c.T1275C:p.G425G,Csrnp1:NM_001357562:exon5:c.T1275C:p.G425G,Csrnp1:NM_153287:exon5:c.T1275C:p.G425G"	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999723	TAC	synonymous	NA	NA	NA	NA
SSC_p20	chr9	120117494	12A2p6	cell line	sgMsh2	120117494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	118	0	0	NA	exonic	Slc25a38	nonsynonymous SNV	Slc25a38:NM_144793:exon3:c.T293C:p.V98A	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	0.890414529	1	0.9998777	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	168	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	2	1	1	4.70E-09	GAT	synonymous	NA	NA	NA	NA
SSC_p20	chr9	123640590	12A2p6	cell line	sgMsh2	123640590	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	97	0	0	NA	exonic	Slc6a20a	nonsynonymous SNV	Slc6a20a:NM_139142:exon9:c.T1441A:p.C481S	9qF4	chr9-110945494-124127055	5	3	2	0.9	5.307106465	RARE KARYOTYPE	1	1	1	0.9999964	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	6083272	12A2p6	cell line	sgMsh2	6083272	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	15	0	0	NA	exonic	Ezhip	synonymous SNV	"Ezhip:NM_001033211:exon1:c.T51G:p.T17T,Ezhip:NM_001166433:exon1:c.T51G:p.T17T"	XqA1.1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chrX	9063657	12A2p6	cell line	sgMsh2	9063657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	174	0	0	NA	exonic	Fthl17f	nonsynonymous SNV	Fthl17f:NM_001038697:exon1:c.A491G:p.N164S	XqA1.1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	16724679	12A2p6	cell line	sgMsh2	16724679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	72	0	0	NA	exonic	Maob	nonsynonymous SNV	Maob:NM_172778:exon9:c.A1006G:p.T336A	XqA1.2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	21486522	12A2p6	cell line	sgMsh2	21486522	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.401	148	0	0	NA	exonic	Agtr2	frameshift insertion	Agtr2:NM_007429:exon3:c.395dupT:p.I135Yfs*7	XqA2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAT	frameshift	T	8	TTTTTTTT	1
SSC_p20	chrX	36930258	12A2p6	cell line	sgMsh2	36930258	T	G	SNV	Mutect2;Vardict	2	0.059	68	0	0	NA	exonic	Septin6	nonsynonymous SNV	"Septin6:NM_001177323:exon7:c.A794C:p.E265A,Septin6:NM_001177324:exon7:c.A797C:p.E266A,Septin6:NM_001253706:exon7:c.A797C:p.E266A,Septin6:NM_001359140:exon7:c.A797C:p.E266A,Septin6:NM_001359141:exon7:c.A770C:p.E257A,Septin6:NM_001359142:exon7:c.A770C:p.E257A,Septin6:NM_019942:exon7:c.A797C:p.E266A"	XqA3.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	37163774	12A2p6	cell line	sgMsh2	37163774	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	127	0	0	NA	exonic	Akap14	nonsynonymous SNV	Akap14:NM_001033785:exon2:c.A307G:p.T103A	XqA3.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	38631186	12A2p6	cell line	sgMsh2	38631186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.659	95	0	0	NA	exonic	C1galt1c1	nonsynonymous SNV	C1galt1c1:NM_021550:exon2:c.A932C:p.N311T	XqA3.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	41826130	12A2p6	cell line	sgMsh2	41826130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	62	0	0	NA	exonic	Thoc2	nonsynonymous SNV	Thoc2:NM_001033422:exon24:c.G2789A:p.R930H	XqA4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	42578249	12A2p6	cell line	sgMsh2	42578249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	52	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon25:c.A4451G:p.N1484S	XqA4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	43591923	12A2p6	cell line	sgMsh2	43591923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	91	0	0	NA	exonic	Tex13c1	nonsynonymous SNV	Tex13c1:NM_001195271:exon1:c.T764C:p.M255T	XqA4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	44367716	12A2p6	cell line	sgMsh2	44367716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	40	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.A295G:p.T99A	XqA4	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	47884197	12A2p6	cell line	sgMsh2	47884197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	65	0	0	NA	exonic	Smarca1	nonsynonymous SNV	"Smarca1:NM_001290708:exon3:c.G280A:p.D94N,Smarca1:NM_001358618:exon3:c.G265A:p.D89N,Smarca1:NM_001358619:exon3:c.G280A:p.D94N,Smarca1:NM_053123:exon3:c.G280A:p.D94N"	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	48876311	12A2p6	cell line	sgMsh2	48876311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	66	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon3:c.A295G:p.S99G	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	49683769	12A2p6	cell line	sgMsh2	49683769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	65	0	0	NA	exonic	Olfr1320	nonsynonymous SNV	Olfr1320:NM_207240:exon1:c.T266C:p.L89S	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	53737717	12A2p6	cell line	sgMsh2	53737717	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.433	61	0	0	NA	exonic	Ct55	frameshift deletion	Ct55:NM_029142:exon5:c.571delT:p.F192Sfs*38	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
SSC_p20	chrX	53751521	12A2p6	cell line	sgMsh2	53751521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	28	0	0	NA	exonic	1700013H16Rik	nonsynonymous SNV	1700013H16Rik:NM_001200013:exon2:c.A323C:p.Q108P	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	53776226	12A2p6	cell line	sgMsh2	53776226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	77	0	0	NA	exonic	Zfp36l3	nonsynonymous SNV	Zfp36l3:NM_001009549:exon1:c.A20G:p.N7S	XqA5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	GCGG	8	GCGGGCGG	NA
SSC_p20	chrX	56362784	12A2p6	cell line	sgMsh2	56362784	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.472	54	0	0	NA	exonic	Zfp449	frameshift deletion	"Zfp449:NM_001359276:exon4:c.356delA:p.K121Nfs*7,Zfp449:NM_030139:exon5:c.716delA:p.K241Nfs*7"	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
SSC_p20	chrX	58031593	12A2p6	cell line	sgMsh2	58031593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.812	14	0	0	NA	exonic	Zic3	nonsynonymous SNV	Zic3:NM_009575:exon1:c.T413C:p.L138P	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	59250947	12A2p6	cell line	sgMsh2	59250947	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.461	38	0	0	NA	exonic	Fgf13	frameshift insertion	Fgf13:NM_001290414:exon3:c.68dupC:p.G24Wfs*27	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
SSC_p20	chrX	59999509	12A2p6	cell line	sgMsh2	59999509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	exonic	F9	nonsynonymous SNV	"F9:NM_001305797:exon1:c.A46G:p.T16A,F9:NM_007979:exon1:c.A46G:p.T16A"	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	60127042	12A2p6	cell line	sgMsh2	60127042	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.471	34	0	0	NA	exonic	Mcf2	frameshift insertion	"Mcf2:NM_001358998:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001358999:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001289730:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_133197:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_001289731:exon10:c.1329dupA:p.L444Tfs*5"	XqA6	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGT	frameshift	T	5	TTTTT	1
SSC_p20	chrX	64271265	12A2p6	cell line	sgMsh2	64271265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	90	0	0	NA	exonic	Slitrk4	nonsynonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1795G:p.T599A,Slitrk4:NM_178740:exon3:c.A1795G:p.T599A,Slitrk4:NM_001365111:exon4:c.A1795G:p.T599A"	XqA7.1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	69844125	12A2p6	cell line	sgMsh2	69844125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.636	32	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon12:c.G2769T:p.K923N	XqA7.2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	72257609	12A2p6	cell line	sgMsh2	72257609	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.562	47	0	0	NA	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon9:c.A2594C:p.K865T	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	73689618	12A2p6	cell line	sgMsh2	73689618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	42	0	0	NA	exonic	Bcap31	nonsynonymous SNV	"Bcap31:NM_001313698:exon5:c.T406A:p.F136I,Bcap31:NM_012060:exon5:c.T406A:p.F136I"	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	73769419	12A2p6	cell line	sgMsh2	73769419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	38	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon26:c.A4657G:p.T1553A	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	C	5	CCCCC	NA
SSC_p20	chrX	74313222	12A2p6	cell line	sgMsh2	74313222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.691	28	0	0	NA	exonic	Fam50a	nonsynonymous SNV	Fam50a:NM_138607:exon1:c.A8G:p.Q3R	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	74331088	12A2p6	cell line	sgMsh2	74331088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	68	0	0	NA	exonic	Plxna3	synonymous SNV	"Plxna3:NM_001358129:exon2:c.T93C:p.D31D,Plxna3:NM_008883:exon2:c.T93C:p.D31D"	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
SSC_p20	chrX	74353470	12A2p6	cell line	sgMsh2	74353470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	87	0	0	NA	exonic	Lage3	nonsynonymous SNV	Lage3:NM_025410:exon1:c.A58G:p.S20G	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	75331457	12A2p6	cell line	sgMsh2	75331457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	91	0	0	NA	exonic	F8	synonymous SNV	"F8:NM_001161373:exon9:c.T1374C:p.R458R,F8:NM_001161374:exon9:c.T1374C:p.R458R,F8:NM_007977:exon9:c.T1374C:p.R458R"	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
SSC_p20	chrX	76266837	12A2p6	cell line	sgMsh2	76266837	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	122	0	0	NA	exonic	Cldn34b3	frameshift deletion	Cldn34b3:NM_001013760:exon2:c.10delA:p.K5Sfs*10	XqA7.3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	A	5	AAAAA	-1
SSC_p20	chrX	79302800	12A2p6	cell line	sgMsh2	79302800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	71	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon60:c.A8636G:p.Y2879C	XqB	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	79493800	12A2p6	cell line	sgMsh2	79493800	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.644	30	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon11:c.T1794C:p.D598D	XqB	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
SSC_p20	chrX	81420164	12A2p6	cell line	sgMsh2	81420164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	77	0	0	NA	exonic	4930595M18Rik	nonsynonymous SNV	4930595M18Rik:NM_173435:exon4:c.A1936G:p.R646G	XqB	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	86251227	12A2p6	cell line	sgMsh2	86251227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	172	0	0	NA	exonic	Mageb4	synonymous SNV	Mageb4:NM_001033492:exon3:c.C1195T:p.L399L	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGT	synonymous	NA	NA	NA	NA
SSC_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	76	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	90892634	12A2p6	cell line	sgMsh2	90892634	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.675	42	0	0	NA	exonic	Gm44	frameshift deletion	Gm44:NM_001101450:exon1:c.493delA:p.K165Nfs*19	XqC1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chrX	92120423	12A2p6	cell line	sgMsh2	92120423	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.495	85	0	0	NA	exonic	Mageb18	frameshift deletion	Mageb18:NM_173783:exon5:c.212delA:p.N71Tfs*1	XqC2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	NA	NA	NA	-1
SSC_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	60	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	96470828	12A2p6	cell line	sgMsh2	96470828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	30	0	0	NA	exonic	Heph	nonsynonymous SNV	"Heph:NM_001159627:exon6:c.C721A:p.L241I,Heph:NM_001159628:exon6:c.C721A:p.L241I,Heph:NM_010417:exon6:c.C721A:p.L241I,Heph:NM_181273:exon6:c.C721A:p.L241I"	XqC3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.609	21	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	68	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.536	84	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chrX	103708008	12A2p6	cell line	sgMsh2	103708008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	79	0	0	NA	exonic	Slc16a2	nonsynonymous SNV	Slc16a2:NM_009197:exon3:c.A791G:p.K264R	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	103	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
SSC_p20	chrX	106156739	12A2p6	cell line	sgMsh2	106156739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.502	107	0	0	NA	exonic	Tlr13	frameshift deletion	Tlr13:NM_205820:exon3:c.81delT:p.F30Sfs*3	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
SSC_p20	chrX	106578134	12A2p6	cell line	sgMsh2	106578134	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	88	0	0	NA	exonic	Cysltr1	nonsynonymous SNV	"Cysltr1:NM_001281862:exon2:c.A706G:p.M236V,Cysltr1:NM_001281859:exon4:c.A745G:p.M249V,Cysltr1:NM_021476:exon4:c.A745G:p.M249V"	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	107947055	12A2p6	cell line	sgMsh2	107947055	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	111	0	0	NA	exonic	Gm732	nonsynonymous SNV	Gm732:NM_001033252:exon2:c.C251A:p.P84H	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	108778381	12A2p6	cell line	sgMsh2	108778381	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	52	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon18:c.A1910T:p.Q637L	XqD	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	112515199	12A2p6	cell line	sgMsh2	112515199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	85	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon4:c.A382G:p.S128G,2010106E10Rik:NM_026333:exon4:c.A382G:p.S128G"	XqE1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	120401646	12A2p6	cell line	sgMsh2	120401646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	56	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.T2785C:p.F929L,Pcdh11x:NM_001271810:exon3:c.T2785C:p.F929L"	XqE2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TTT	nonsynonymous	CTA	8	CTACTACT	NA
SSC_p20	chrX	122395485	12A2p6	cell line	sgMsh2	122395485	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	65	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1535T:p.D512V	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	126814960	12A2p6	cell line	sgMsh2	126814960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	103	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.G521A:p.R174K	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	127063090	12A2p6	cell line	sgMsh2	127063090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	61	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.T2897C:p.L966P	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	133865377	12A2p6	cell line	sgMsh2	133865377	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.391	71	0	0	NA	exonic	Tnmd	stopgain	Tnmd:NM_022322:exon7:c.G926A:p.W309X	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	TGG	nonsynonymous	GGTG	9	GGTGGGTGG	NA
SSC_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	52	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	134721417	12A2p6	cell line	sgMsh2	134721417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	73	0	0	NA	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.T1267C:p.L423L,Armcx1:NM_001166379:exon4:c.T1267C:p.L423L,Armcx1:NM_001166380:exon5:c.T1267C:p.L423L,Armcx1:NM_001166377:exon6:c.T1267C:p.L423L,Armcx1:NM_030066:exon6:c.T1267C:p.L423L"	XqE3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
SSC_p20	chrX	138988778	12A2p6	cell line	sgMsh2	138988778	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	49	0	0	NA	exonic	Nrk	synonymous SNV	Nrk:NM_013724:exon20:c.A3297C:p.P1099P	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
SSC_p20	chrX	139080483	12A2p6	cell line	sgMsh2	139080483	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.573	34	0	0	NA	exonic	Serpina7	frameshift deletion	"Serpina7:NM_177920:exon5:c.1083delT:p.H362Tfs*42,Serpina7:NM_001382371:exon6:c.1059delT:p.H354Tfs*42,Serpina7:NM_001382372:exon6:c.1059delT:p.H354Tfs*42"	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
SSC_p20	chrX	139236386	12A2p6	cell line	sgMsh2	139236386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.54	49	0	0	NA	exonic	Pwwp3b	nonsynonymous SNV	"Pwwp3b:NM_001164631:exon4:c.A1672G:p.I558V,Pwwp3b:NM_001164632:exon5:c.A1672G:p.I558V,Pwwp3b:NM_001164633:exon5:c.A1672G:p.I558V,Pwwp3b:NM_175541:exon6:c.A1672G:p.I558V,Pwwp3b:NM_001164630:exon7:c.A1672G:p.I558V"	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	140028155	12A2p6	cell line	sgMsh2	140028155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	64	0	0	NA	exonic	Nup62cl	nonsynonymous SNV	Nup62cl:NM_001081668:exon4:c.A346T:p.I116F	XqF1	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	143735268	12A2p6	cell line	sgMsh2	143735268	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	47	0	0	NA	exonic	Pak3	synonymous SNV	"Pak3:NM_001195047:exon7:c.C675G:p.R225R,Pak3:NM_008778:exon7:c.C612G:p.R204R,Pak3:NM_001195046:exon8:c.C720G:p.R240R,Pak3:NM_001195048:exon8:c.C657G:p.R219R,Pak3:NM_001195049:exon10:c.C612G:p.R204R"	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
SSC_p20	chrX	143804468	12A2p6	cell line	sgMsh2	143804468	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	exonic	Capn6	frameshift deletion	Capn6:NM_007603:exon12:c.1632delA:p.K544Nfs*64	XqF2	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATT	frameshift	NA	NA	NA	-1
SSC_p20	chrX	151233083	12A2p6	cell line	sgMsh2	151233083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.625	24	0	0	NA	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon7:c.T1534C:p.Y512H,Wnk3:NM_001271679:exon7:c.T1534C:p.Y512H"	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.584	77	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	152061792	12A2p6	cell line	sgMsh2	152061792	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	113	0	0	NA	exonic	Smc1a	frameshift deletion	Smc1a:NM_019710:exon25:c.3685delA:p.N1229Tfs*46	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	CCAACC	16	CCAACCCCAACCCCAA	-1
SSC_p20	chrX	152339886	12A2p6	cell line	sgMsh2	152339886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	87	0	0	NA	exonic	Tspyl2	synonymous SNV	"Tspyl2:NM_001358369:exon4:c.C1098A:p.L366L,Tspyl2:NM_029836:exon4:c.C1098A:p.L366L"	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GGA	synonymous	NA	NA	NA	NA
SSC_p20	chrX	155623097	12A2p6	cell line	sgMsh2	155623097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	52	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon1:c.A214G:p.S72G	XqF3	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	164422992	12A2p6	cell line	sgMsh2	164422992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	32	0	0	NA	exonic	Piga	nonsynonymous SNV	Piga:NM_011081:exon2:c.T347C:p.I116T	XqF5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	164535505	12A2p6	cell line	sgMsh2	164535505	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.241	54	0	0	NA	exonic	Asb9	nonsynonymous SNV	Asb9:NM_027027:exon7:c.C692A:p.P231H	XqF5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	166400997	12A2p6	cell line	sgMsh2	166400997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	46	0	0	NA	exonic	Ofd1	nonsynonymous SNV	Ofd1:NM_177429:exon19:c.A2564G:p.H855R	XqF5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
SSC_p20	chrX	167479139	12A2p6	cell line	sgMsh2	167479139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.646	46	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001290428:exon15:c.A1873G:p.S625G,Frmpd4:NM_001359072:exon15:c.A1984G:p.S662G,Frmpd4:NM_001368936:exon15:c.A1993G:p.S665G,Frmpd4:NM_001290427:exon16:c.A1969G:p.S657G,Frmpd4:NM_001369234:exon17:c.A2047G:p.S683G,Frmpd4:NM_001033330:exon18:c.A1969G:p.S657G"	XqF5	NA	NA	NA	NA	0.9	5.307106465	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	6248375	12A2p6	cell line	sgMsh2	6248375	C	T	SNV	Mutect2;Vardict	2	0.032	156	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon15:c.C2017T:p.L673L	1qA1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.14479545	3	0.9996029	ACT	synonymous	NA	NA	NA	NA
09-2_par	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	77	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.986419003	1	1.92E-08	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	118	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.914021278	1	1.18E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	173	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9982508	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
09-2_par	chr1	18130241	12A2p6	cell line	sgMsh2	18130241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	88	0	0	NA	exonic	Crisp4	synonymous SNV	"Crisp4:NM_001347048:exon4:c.T219C:p.S73S,Crisp4:NM_001347047:exon5:c.T336C:p.S112S"	1qA3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.9471781	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	61	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.624430378	1	0.8135429	TGC	synonymous	NA	NA	NA	NA
09-2_par	chr1	26682136	12A2p6	cell line	sgMsh2	26682136	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	138	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.T3962C:p.I1321T	1qA5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.8292008	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	24	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	1	1	0.9967803	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	34181935	12A2p6	cell line	sgMsh2	34181935	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	119	0	0	NA	exonic	Dst	synonymous SNV	Dst:NM_010081:exon24:c.A6819G:p.E2273E	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9701437	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr1	34213058	12A2p6	cell line	sgMsh2	34213058	A	G	SNV	Mutect2;Vardict	2	0.045	90	0	0	NA	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon44:c.A6829G:p.I2277V,Dst:NM_134448:exon49:c.A12871G:p.I4291V,Dst:NM_001276764:exon52:c.A13405G:p.I4469V"	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.8528356	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	82	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.751126397	1	0.9996409	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	47	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.488684644	2	0.9232479	GGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	38804324	12A2p6	cell line	sgMsh2	38804324	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	56	0	0	NA	exonic	Lonrf2	nonsynonymous SNV	Lonrf2:NM_001029878:exon10:c.T1835A:p.I612N	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9884103	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	40743926	12A2p6	cell line	sgMsh2	40743926	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	131	0	0	NA	exonic	Slc9a2	nonsynonymous SNV	Slc9a2:NM_001033289:exon5:c.T1349C:p.L450P	1qB	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9845344	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	45322501	12A2p6	cell line	sgMsh2	45322501	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.132	38	0	0	NA	exonic	Col3a1	synonymous SNV	Col3a1:NM_009930:exon4:c.A432G:p.S144S	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.597281231	1	0.5800294	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	105	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.692303245	1	0.9986714	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	46515309	12A2p6	cell line	sgMsh2	46515309	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	134	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon12:c.T1203C:p.G401G	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.8636413	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.143	21	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.647054667	1	0.6818079	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	131	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9884758	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	53181857	12A2p6	cell line	sgMsh2	53181857	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	149	0	0	NA	exonic	1700019A02Rik	synonymous SNV	"1700019A02Rik:NM_027070:exon4:c.A213G:p.K71K,1700019A02Rik:NM_001368200:exon5:c.A213G:p.K71K"	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9880723	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.086	132	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.389137772	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr1	55000690	12A2p6	cell line	sgMsh2	55000690	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	104	0	0	NA	exonic	Sf3b1	synonymous SNV	Sf3b1:NM_031179:exon14:c.T2031C:p.C677C	1qC1.2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.9791933	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr1	55214191	12A2p6	cell line	sgMsh2	55214191	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	69	0	0	NA	exonic	Rftn2	synonymous SNV	Rftn2:NM_028713:exon2:c.A252G:p.Q84Q	1qC1.2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.8812992	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr1	58476438	12A2p6	cell line	sgMsh2	58476438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	171	0	0	NA	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon8:c.T766C:p.L256L,Orc2:NM_001271526:exon11:c.T910C:p.L304L,Orc2:NM_008765:exon11:c.T910C:p.L304L"	1qC1.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9999807	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	69	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.696828103	1	0.9893096	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	62164145	12A2p6	cell line	sgMsh2	62164145	T	C	SNV	Mutect2;Vardict	2	0.089	48	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon9:c.T1231C:p.F411L	1qC2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.402712345	2	0.9747441	TTT	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr1	72534805	12A2p6	cell line	sgMsh2	72534805	A	G	SNV	Mutect2;Vardict	2	0.069	59	0	0	NA	exonic	Marchf4	synonymous SNV	Marchf4:NM_001045533:exon1:c.T333C:p.P111P	1qC3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	9.78E-05	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	74517087	12A2p6	cell line	sgMsh2	74517087	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.095	86	0	0	NA	exonic	Cnot9	frameshift deletion	Cnot9:NM_021383:exon2:c.42delA:p.A15Pfs*27	1qC3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.429861492	NA	NA	TAG	frameshift	NA	NA	NA	-1
09-2_par	chr1	74517092	12A2p6	cell line	sgMsh2	74517092	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	88	0	0	NA	exonic	Cnot9	nonsynonymous SNV	Cnot9:NM_021383:exon2:c.A47C:p.Q16P	1qC3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.425336634	2	0.9993275	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	102	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.841623553	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	127	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9999911	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	71	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.325789762	2	0.9537038	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	78443700	12A2p6	cell line	sgMsh2	78443700	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	115	0	0	NA	exonic	Farsb	nonsynonymous SNV	"Farsb:NM_001278075:exon16:c.T1553G:p.I518S,Farsb:NM_011811:exon16:c.T1553G:p.I518S"	1qC4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.542982937	2	0.9294317	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	82286841	12A2p6	cell line	sgMsh2	82286841	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	92	0	0	NA	exonic	Irs1	nonsynonymous SNV	Irs1:NM_010570:exon1:c.A3653G:p.Y1218C	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	8.28E-08	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	119	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.547507795	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr1	86085228	12A2p6	cell line	sgMsh2	86085228	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	166	0	0	NA	exonic	Psmd1	nonsynonymous SNV	Psmd1:NM_027357:exon10:c.A1118G:p.N373S	1qC5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.8645551	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	87881933	12A2p6	cell line	sgMsh2	87881933	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	83	0	0	NA	exonic	Dgkd	synonymous SNV	Dgkd:NM_177646:exon3:c.T342C:p.S114S	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.325789762	2	0.9706334	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	270	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.194568886	3	0.9990541	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	91319076	12A2p6	cell line	sgMsh2	91319076	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	83	0	0	NA	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon11:c.A1108T:p.S370C	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.33031462	2	0.9755631	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	92588592	12A2p6	cell line	sgMsh2	92588592	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	219	0	0	NA	exonic	Olfr1412	nonsynonymous SNV	Olfr1412:NM_146277:exon1:c.A261C:p.K87N	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.389137772	2	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	93056263	12A2p6	cell line	sgMsh2	93056263	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	155	0	0	NA	exonic	Kif1a	nonsynonymous SNV	"Kif1a:NM_001110315:exon20:c.G1759A:p.G587R,Kif1a:NM_001294149:exon20:c.G1759A:p.G587R,Kif1a:NM_001294150:exon20:c.G1786A:p.G596R,Kif1a:NM_008440:exon20:c.G1759A:p.G587R,Kif1a:NM_001368847:exon21:c.G1786A:p.G596R"	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.8067399	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	93159815	12A2p6	cell line	sgMsh2	93159815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	60	0	0	NA	exonic	Mab21l4	synonymous SNV	"Mab21l4:NM_001159940:exon2:c.T315C:p.T105T,Mab21l4:NM_172411:exon2:c.T315C:p.T105T"	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.542982937	2	8.45E-05	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.837098695	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	115	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.9348626	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	60	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.886872131	NA	NA	GTT	frameshift	NA	NA	NA	-1
09-2_par	chr1	104941122	12A2p6	cell line	sgMsh2	104941122	A	G	SNV	Mutect2;Vardict	2	0.05	79	0	0	NA	exonic	Cdh20	nonsynonymous SNV	Cdh20:NM_011800:exon3:c.A337G:p.T113A	1qE2.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.6490753	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	115685184	12A2p6	cell line	sgMsh2	115685184	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	335	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon1:c.A48G:p.S16S,Cntnap5a:NM_001371013:exon1:c.A48G:p.S16S"	1qE2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.117646303	3	1.39E-09	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.081	211	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.366513483	NA	NA	CAT	frameshift	T	5	TTTTT	1
09-2_par	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	70	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.904971562	1	0.9999976	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	121557468	12A2p6	cell line	sgMsh2	121557468	C	T	SNV	Mutect2;Vardict	2	0.058	168	0	0	NA	exonic	Ddx18	synonymous SNV	Ddx18:NM_025860:exon10:c.G1542A:p.G514G	1qE2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.8162015	GCC	synonymous	NA	NA	NA	NA
09-2_par	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.176	117	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.796374975	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	72	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.719452392	1	0.9965211	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999975	GGC	synonymous	NA	NA	NA	NA
09-2_par	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	103	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.9729386	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr1	135301934	12A2p6	cell line	sgMsh2	135301934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	140	0	0	NA	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon6:c.A434G:p.Y145C,Timm17a:NM_001360858:exon6:c.A263G:p.Y88C,Timm17a:NM_011590:exon6:c.A500G:p.Y167C"	1qE4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9916195	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2	2	0.052	102	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.5979667	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2	2	0.052	102	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.5979667	TTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	156	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.520358648	NA	NA	CTT	frameshift	NA	NA	NA	-1
09-2_par	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	43	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.8032501	AAG	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr1	156635122	12A2p6	cell line	sgMsh2	156635122	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	124	0	0	NA	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.T1466A:p.I489N,Abl2:NM_009595:exon9:c.T1466A:p.I489N"	1qG3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.6931127	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	105	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9772744	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	164257255	12A2p6	cell line	sgMsh2	164257255	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	126	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	Slc19a2:NM_054087:exon2:c.T713G:p.V238G	1qH2.2	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8845509	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	111	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	3.01E-08	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Vardict	2	0.07	63	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.9185971	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	133	0	0	NA	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.438911208	2	0.9999795	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	120	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.674203814	1	0.998214	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	195	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.796374975	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr1	174184685	12A2p6	cell line	sgMsh2	174184685	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	91	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon8:c.C1056T:p.R352R	1qH3	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.307690331	2	0.9518766	GCA	synonymous	NA	NA	NA	NA
09-2_par	chr1	176756424	12A2p6	cell line	sgMsh2	176756424	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	174	0	0	NA	exonic	Cep170	nonsynonymous SNV	"Cep170:NM_001368872:exon11:c.A1944C:p.Q648H,Cep170:NM_001368873:exon12:c.A2094C:p.Q698H,Cep170:NM_001099637:exon13:c.A2388C:p.Q796H"	1qH4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9994861	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	49	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.927595852	1	0.9999379	ATA	synonymous	NA	NA	NA	NA
09-2_par	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	77	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.610855805	1	0.7796051	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.1954	87	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.884157217	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
09-2_par	chr1	184919705	12A2p6	cell line	sgMsh2	184919705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	113	0	0	NA	exonic	Mark1	nonsynonymous SNV	"Mark1:NM_001378876:exon8:c.T602C:p.F201S,Mark1:NM_145515:exon8:c.T602C:p.F201S"	1qH5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9881317	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	187192998	12A2p6	cell line	sgMsh2	187192998	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	144	0	0	NA	exonic	Spata17	nonsynonymous SNV	"Spata17:NM_028848:exon3:c.A229G:p.I77V,Spata17:NM_029067:exon3:c.A229G:p.I77V"	1qH5	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.6582817	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	78	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.94	4.253366344	NA	1	0.628955236	1	0.8897496	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	76	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.9372423	ACT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	45	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.8136183	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	4030735	12A2p6	cell line	sgMsh2	4030735	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	165	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon13:c.A1436G:p.E479G,Mthfd1l:NM_001170786:exon13:c.A1436G:p.E479G,Mthfd1l:NM_172308:exon13:c.A1436G:p.E479G"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.9836521	GAG	nonsynonymous	GGA	8	GGAGGAGG	NA
09-2_par	chr10	5228100	12A2p6	cell line	sgMsh2	5228100	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	71	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.A14394C:p.K4798N,Syne1:NM_001347732:exon77:c.A14373C:p.K4791N"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.438911208	2	0.9962093	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	5259244	12A2p6	cell line	sgMsh2	5259244	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	63	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon63:c.G10279A:p.A3427T,Syne1:NM_001347732:exon63:c.G10258A:p.A3420T"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9683632	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	116	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.809949548	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	104	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.9984276	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	10719305	12A2p6	cell line	sgMsh2	10719305	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	132	0	0	NA	exonic	Grm1	nonsynonymous SNV	"Grm1:NM_001114333:exon8:c.G2578A:p.V860I,Grm1:NM_016976:exon8:c.G2578A:p.V860I"	10qA1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.244342322	2	0.5047828	ACG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	73	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	2	1	1	2.71E-08	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	20278172	12A2p6	cell line	sgMsh2	20278172	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	113	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon17:c.A2033T:p.Q678L,Map7:NM_001358787:exon17:c.A2075T:p.Q692L,Map7:NM_008635:exon17:c.A2009T:p.Q670L"	10qA3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.9990825	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	22180803	12A2p6	cell line	sgMsh2	22180803	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	74	0	0	NA	exonic	Raet1c;Raet1e	nonsynonymous SNV	"Raet1c:NM_009018:exon4:c.C274G:p.L92V,Raet1e:NM_198193:exon4:c.C277G:p.L93V,Raet1e:NM_001359809:exon5:c.C277G:p.L93V,Raet1e:NM_001359808:exon6:c.C277G:p.L93V"	10qA3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.425336634	2	0.9976468	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	22694079	12A2p6	cell line	sgMsh2	22694079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	133	0	0	NA	exonic	Slc2a12	synonymous SNV	Slc2a12:NM_178934:exon4:c.G1668A:p.E556E	10qA3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.515833791	2	0.9936161	AGA	synonymous	NA	NA	NA	NA
09-2_par	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	34	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	2	1	1	0.9997051	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.286	93	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	1	1	1.22E-09	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	65	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	26327738	12A2p6	cell line	sgMsh2	26327738	T	C	SNV	Mutect2;Vardict	2	0.038	136	0	0	NA	exonic	L3mbtl3	nonsynonymous SNV	"L3mbtl3:NM_001347467:exon11:c.A1118G:p.D373G,L3mbtl3:NM_001359254:exon12:c.A1193G:p.D398G,L3mbtl3:NM_001359255:exon12:c.A965G:p.D322G,L3mbtl3:NM_172787:exon12:c.A1193G:p.D398G"	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9928962	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Strelka2;Vardict	2	0.05	120	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.226242891	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	95	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	1	1	1.13E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	46	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.787325259	1	0.9954997	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	45125980	12A2p6	cell line	sgMsh2	45125980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	168	0	0	NA	exonic	Prep	synonymous SNV	Prep:NM_011156:exon10:c.C1230T:p.C410C	10qB2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9999767	GCG	synonymous	NA	NA	NA	NA
09-2_par	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	121	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.782800402	1	0.9999991	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	50842202	12A2p6	cell line	sgMsh2	50842202	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	95	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon39:c.T5990C:p.L1997P	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.09614495	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	50842211	12A2p6	cell line	sgMsh2	50842211	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	92	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon39:c.T5999C:p.L2000P	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.7559058	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	50845693	12A2p6	cell line	sgMsh2	50845693	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	82	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon40:c.T6241A:p.Y2081N	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.8555934	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	51491491	12A2p6	cell line	sgMsh2	51491491	C	T	SNV	Mutect2;Vardict	2	0.057	143	0	0	NA	exonic	Lilrb4a	nonsynonymous SNV	Lilrb4a:NM_013532:exon3:c.C128T:p.T43I	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.257916895	2	0.7266898	ACA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	52284199	12A2p6	cell line	sgMsh2	52284199	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	91	0	0	NA	exonic	Dcbld1	nonsynonymous SNV	"Dcbld1:NM_001347444:exon2:c.G182A:p.R61Q,Dcbld1:NM_025705:exon3:c.G395A:p.R132Q"	10qB3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6222772	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	58457650	12A2p6	cell line	sgMsh2	58457650	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	90	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon7:c.G841T:p.A281S	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.425336634	2	0.9994377	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	58478749	12A2p6	cell line	sgMsh2	58478749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	110	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.A5290G:p.T1764A	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.447960923	2	0.9997742	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	59192281	12A2p6	cell line	sgMsh2	59192281	A	-	Deletion	Strelka2;Vardict	2	0.0714	98	0	0	NA	exonic	Septin10	frameshift deletion	"Septin10:NM_001024910:exon3:c.217delT:p.C73Vfs*19,Septin10:NM_001024911:exon3:c.217delT:p.C73Vfs*19,Septin10:NM_001379063:exon3:c.229delT:p.C77Vfs*19,Septin10:NM_001379064:exon3:c.229delT:p.C77Vfs*19,Septin10:NM_001379065:exon3:c.229delT:p.C77Vfs*19,Septin10:NM_001379066:exon3:c.217delT:p.C73Vfs*19"	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.323074848	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Vardict	2	0.055	74	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5697213	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr10	62879676	12A2p6	cell line	sgMsh2	62879676	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	135	0	0	NA	exonic	Tet1	synonymous SNV	Tet1:NM_001253857:exon2:c.A339G:p.R113R	10qB4	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	0.5727192	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	90	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.402712345	2	0.9991985	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	51	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.959269856	1	0.9999834	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	101	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	1	1	1.03E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	79293627	12A2p6	cell line	sgMsh2	79293627	A	C	SNV	Mutect2;MuSe;Vardict	3	0.054	428	0	0	NA	exonic	Vmn2r81	nonsynonymous SNV	Vmn2r81:NM_175936:exon6:c.A2351C:p.K784T	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.244342322	3	0.6121318	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	79623918	12A2p6	cell line	sgMsh2	79623918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	36	0	0	NA	exonic	Shc2	synonymous SNV	Shc2:NM_001024539:exon10:c.T1191C:p.N397N	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.705877819	1	0.9272084	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr10	80068771	12A2p6	cell line	sgMsh2	80068771	T	C	SNV	Mutect2;Vardict	2	0.045	91	0	0	NA	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359636:exon7:c.A682G:p.S228G,Sbno2:NM_001359635:exon10:c.A904G:p.S302G,Sbno2:NM_183426:exon10:c.A904G:p.S302G"	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.8555866	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	35	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.796374975	1	0.9864443	CGC	synonymous	GCTG	8	GCTGGCTG	NA
09-2_par	chr10	80536760	12A2p6	cell line	sgMsh2	80536760	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	129	0	0	NA	exonic	Atp8b3	synonymous SNV	Atp8b3:NM_026094:exon2:c.A45G:p.T15T	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5787298	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	97	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.805424691	1	0.9999959	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	80703896	12A2p6	cell line	sgMsh2	80703896	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	143	0	0	NA	exonic	Izumo4	nonsynonymous SNV	Izumo4:NM_027829:exon5:c.C468G:p.D156E	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9627914	ACT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	154	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.479634928	2	0.9998808	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	84725752	12A2p6	cell line	sgMsh2	84725752	G	T	SNV	Mutect2;Vardict	2	0.085	45	0	0	NA	exonic	Polr3b	nonsynonymous SNV	Polr3b:NM_027423:exon28:c.G3374T:p.R1125M	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9598925	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	86064868	12A2p6	cell line	sgMsh2	86064868	A	G	SNV	Mutect2;Vardict	2	0.114	41	0	0	NA	exonic	Syn3	synonymous SNV	Syn3:NM_013722:exon11:c.T1155C:p.A385A	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.515833791	2	0.8244776	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr10	88160925	12A2p6	cell line	sgMsh2	88160925	A	C	SNV	Mutect2;Vardict	2	0.059	88	0	0	NA	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon5:c.A404C:p.K135T,Nup37:NM_028334:exon5:c.A404C:p.K135T"	10qC1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	9.58E-08	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	64	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9849055	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	107572986	12A2p6	cell line	sgMsh2	107572986	A	G	SNV	Mutect2;Vardict	2	0.046	92	0	0	NA	exonic	Ptprq	nonsynonymous SNV	"Ptprq:NM_001081432:exon33:c.T5665C:p.Y1889H,Ptprq:NM_001370987:exon33:c.T5668C:p.Y1890H"	10qD1	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.8308693	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	111980040	12A2p6	cell line	sgMsh2	111980040	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	114	0	0	NA	exonic	Krr1	nonsynonymous SNV	Krr1:NM_178610:exon7:c.C811A:p.P271T	10qD2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9994846	CCC	nonsynonymous	C	5	CCCCC	NA
09-2_par	chr10	115414285	12A2p6	cell line	sgMsh2	115414285	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	106	0	0	NA	exonic	Zfc3h1	nonsynonymous SNV	Zfc3h1:NM_001033261:exon18:c.T3701C:p.M1234T	10qD2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.352938909	2	0.9971308	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	124	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.859722984	1	3.76E-09	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	125231093	12A2p6	cell line	sgMsh2	125231093	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	140	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon5:c.G676A:p.V226I,Slc16a7:NM_001358915:exon5:c.G676A:p.V226I,Slc16a7:NM_011391:exon6:c.G676A:p.V226I"	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9600822	ACC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	42	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999565	CCG	synonymous	NA	NA	NA	NA
09-2_par	chr10	127498509	12A2p6	cell line	sgMsh2	127498509	G	-	Deletion	Strelka2;Vardict	2	0.087	46	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359245:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359246:exon24:c.2881delG:p.D963Tfs*19,R3hdm2:NM_027900:exon24:c.2800delG:p.D936Tfs*19,R3hdm2:NM_001359243:exon25:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001168292:exon26:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001359244:exon26:c.2839delG:p.D949Tfs*19"	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.39366263	NA	NA	CGG	frameshift	G	5	GGGGG	-1
09-2_par	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	88	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	7.25E-08	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Vardict	2	0.08	52	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.9604496	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr10	128015983	12A2p6	cell line	sgMsh2	128015983	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	120	0	0	NA	exonic	Prim1	synonymous SNV	Prim1:NM_008921:exon2:c.A123G:p.Q41Q	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.9842541	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr10	128209424	12A2p6	cell line	sgMsh2	128209424	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	75	0	0	NA	exonic	Gls2	nonsynonymous SNV	"Gls2:NM_001285777:exon17:c.A1222G:p.N408D,Gls2:NM_001033264:exon18:c.A1789G:p.N597D,Gls2:NM_001285779:exon18:c.A994G:p.N332D"	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.944891	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	129238632	12A2p6	cell line	sgMsh2	129238632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	271	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T482G:p.F161C	10qD3	chr10-3120209-129526639	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9999998	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	129670245	12A2p6	cell line	sgMsh2	129670245	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	234	0	0	NA	exonic	Olfr801	synonymous SNV	Olfr801:NM_146285:exon1:c.C273A:p.S91S	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr10	129738207	12A2p6	cell line	sgMsh2	129738207	A	-	Deletion	Mutect2;Vardict	2	0.021	332	0	0	NA	exonic	Olfr806	frameshift deletion	Olfr806:NM_146553:exon1:c.709delT:p.S237Pfs*29	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
09-2_par	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	154	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.A763T:p.M255L	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATA	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr10	129776068	12A2p6	cell line	sgMsh2	129776068	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	210	0	0	NA	exonic	Olfr809	synonymous SNV	Olfr809:NM_146324:exon1:c.C198T:p.S66S	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
09-2_par	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	163	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	130446269	12A2p6	cell line	sgMsh2	130446269	T	C	SNV	Mutect2;Vardict	2	0.027	384	0	0	NA	exonic	Vmn2r86	nonsynonymous SNV	Vmn2r86:NM_001103365:exon6:c.A2477G:p.K826R	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	544	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
09-2_par	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	43	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999658	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	77	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.429861492	2	0.9981119	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	74	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9514437	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	94	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.936645567	1	6.18E-09	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	23494986	12A2p6	cell line	sgMsh2	23494986	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	129	0	0	NA	exonic	Ahsa2	nonsynonymous SNV	"Ahsa2:NM_001290654:exon3:c.A206G:p.D69G,Ahsa2:NM_001290655:exon3:c.A350G:p.D117G,Ahsa2:NM_172391:exon3:c.A350G:p.D117G"	11qA3.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.257916895	2	0.7119316	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	139	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.945695283	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	1	1	1.72E-08	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.72397725	1	0.9998966	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	69	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.97284443	1	0.9999998	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	115	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.39366263	2	0.9998267	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
09-2_par	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	133	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr11	40736514	12A2p6	cell line	sgMsh2	40736514	T	C	SNV	Mutect2;Vardict	2	0.038	108	0	0	NA	exonic	Nudcd2	nonsynonymous SNV	Nudcd2:NM_026023:exon3:c.T260C:p.I87T	11qA5	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9796746	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	118	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.520358648	2	0.9848359	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr11	43445438	12A2p6	cell line	sgMsh2	43445438	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	123	0	0	NA	exonic	Slu7	nonsynonymous SNV	"Slu7:NM_198936:exon15:c.A1544C:p.D515A,Slu7:NM_148673:exon16:c.A1544C:p.D515A"	11qB1.1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.6286251	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	43835686	12A2p6	cell line	sgMsh2	43835686	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	62	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon1:c.A403G:p.S135G,Adra1b:NM_001284380:exon3:c.A403G:p.S135G,Adra1b:NM_001284381:exon4:c.A403G:p.S135G"	11qB1.1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.9777462	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	69	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.950220141	1	0.9999995	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr11	49280252	12A2p6	cell line	sgMsh2	49280252	T	C	SNV	Mutect2;Vardict	2	0.022	372	0	0	NA	exonic	Olfr1393	nonsynonymous SNV	Olfr1393:NM_146471:exon1:c.T103C:p.Y35H	11qB1.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.099546872	3	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Vardict	2	0.028	330	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.126696019	3	3.45E-09	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	304	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.719452392	1	1.04E-09	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	50146190	12A2p6	cell line	sgMsh2	50146190	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	83	0	0	NA	exonic	Tbc1d9b	nonsynonymous SNV	"Tbc1d9b:NM_001290759:exon5:c.G665A:p.R222Q,Tbc1d9b:NM_001290760:exon5:c.G665A:p.R222Q,Tbc1d9b:NM_029745:exon5:c.G665A:p.R222Q"	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9973284	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	112	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.8795412	GCC	synonymous	NA	NA	NA	NA
09-2_par	chr11	51571205	12A2p6	cell line	sgMsh2	51571205	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	39	0	0	NA	exonic	Col23a1	nonsynonymous SNV	Col23a1:NM_153393:exon19:c.A1067G:p.E356G	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.921343	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	51825013	12A2p6	cell line	sgMsh2	51825013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	44	0	0	NA	exonic	Jade2	nonsynonymous SNV	"Jade2:NM_199299:exon9:c.C1364T:p.A455V,Jade2:NM_001357588:exon10:c.C1580T:p.A527V"	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.633480094	1	0.7838301	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	110	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	AAC	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	88	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5720192	GAT	nonsynonymous	TGA	8	TGATGATG	NA
09-2_par	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Vardict	2	0.031	338	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	1.61E-08	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	61	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.981894145	1	0.9999991	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Vardict	2	0.06	273	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.9712752	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	76	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9135492	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	210	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.47511007	2	0.9999974	CCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	67344985	12A2p6	cell line	sgMsh2	67344985	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	117	0	0	NA	exonic	Myh13	nonsynonymous SNV	Myh13:NM_001081250:exon16:c.A1973G:p.N658S	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9321227	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	61	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999995	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Vardict	2	0.029	221	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3132249-69579350	4	2	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999969	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	68	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.728502108	1	0.9966489	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	69850370	12A2p6	cell line	sgMsh2	69850370	A	C	SNV	Mutect2;Vardict	2	0.055	72	0	0	NA	exonic	Plscr3	synonymous SNV	"Plscr3:NM_001168497:exon8:c.A861C:p.G287G,Plscr3:NM_023564:exon8:c.A861C:p.G287G"	11qB3	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.24886718	2	6.14E-07	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr11	70030599	12A2p6	cell line	sgMsh2	70030599	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	143	0	0	NA	exonic	Dlg4	stopgain	Dlg4:NM_007864:exon4:c.T155A:p.L52X	11qB3	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.375563198	2	0.9999205	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	61	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	1	1	0.9999995	CGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	73940563	12A2p6	cell line	sgMsh2	73940563	T	-	Deletion	Mutect2;Vardict	2	0.041	292	0	0	NA	exonic	Olfr23	frameshift deletion	Olfr23:NM_010970:exon1:c.316delT:p.F107Lfs*29	11qB4	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.18551917	NA	NA	GTT	frameshift	T	6	TTTTTT	-1
09-2_par	chr11	74206569	12A2p6	cell line	sgMsh2	74206569	A	G	SNV	Mutect2;Vardict	2	0.049	221	0	0	NA	exonic	Olfr43	nonsynonymous SNV	Olfr43:NM_146711:exon1:c.T646C:p.S216P	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.221718033	3	0.9333208	GAG	nonsynonymous	GAT	10	GATGATGATG	NA
09-2_par	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	125	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	1	1	1.00E-09	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Vardict	2	0.076	69	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.343889194	2	0.9726808	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	76949975	12A2p6	cell line	sgMsh2	76949975	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	108	0	0	NA	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon3:c.T227G:p.F76C	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.321264905	2	0.9857481	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	77846442	12A2p6	cell line	sgMsh2	77846442	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	93	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon29:c.A3764C:p.D1255A,Myo18a:NM_011586:exon30:c.A4769C:p.D1590A,Myo18a:NM_001291212:exon31:c.A4805C:p.D1602A,Myo18a:NM_001291213:exon31:c.A4913C:p.D1638A,Myo18a:NM_001291215:exon32:c.A3830C:p.D1277A"	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.303165473	2	0.9444604	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	78255078	12A2p6	cell line	sgMsh2	78255078	A	G	SNV	Mutect2;Vardict	2	0.046	86	0	0	NA	exonic	Sdf2	synonymous SNV	Sdf2:NM_009143:exon3:c.A600G:p.E200E	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.208143459	3	0.8134998	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr11	78271976	12A2p6	cell line	sgMsh2	78271976	T	C	SNV	Mutect2;Vardict	2	0.065	77	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon16:c.T2663C:p.V888A	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.294115758	2	0.8844503	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	44	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.904971562	1	0.9997049	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr11	78519180	12A2p6	cell line	sgMsh2	78519180	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	108	0	0	NA	exonic	Poldip2	nonsynonymous SNV	Poldip2:NM_026389:exon9:c.T787C:p.W263R	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.262441753	2	0.7390304	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	78959674	12A2p6	cell line	sgMsh2	78959674	A	C	SNV	Mutect2;Vardict	2	0.046	71	0	0	NA	exonic	Nos2	nonsynonymous SNV	"Nos2:NM_001313921:exon26:c.A3018C:p.E1006D,Nos2:NM_001313922:exon26:c.A3018C:p.E1006D,Nos2:NM_010927:exon27:c.A3357C:p.E1119D"	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.208143459	3	0.7641727	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	42	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.990943861	1	0.9999459	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr11	82722463	12A2p6	cell line	sgMsh2	82722463	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	142	0	0	NA	exonic	Cct6b	synonymous SNV	"Cct6b:NM_001291242:exon12:c.T1251G:p.G417G,Cct6b:NM_009839:exon12:c.T1368G:p.G456G"	11qC	chr11-69590981-82929860	4	4	0	0.94	4.253366344	NA	1	0.380088056	2	0.9999386	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr11	84878147	12A2p6	cell line	sgMsh2	84878147	T	-	Deletion	Mutect2;Vardict	2	0.061	110	0	0	NA	exonic	Pigw	frameshift deletion	"Pigw:NM_001077636:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_001363112:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_027388:exon2:c.355delA:p.I119Sfs*2"	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.276016327	NA	NA	ATT	frameshift	NA	NA	NA	-1
09-2_par	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	117	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.932120709	1	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Vardict	2	0.111	35	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.502259217	2	0.8267621	GGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	94	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.995468719	1	1.22E-09	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	90276863	12A2p6	cell line	sgMsh2	90276863	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	36	0	0	NA	exonic	Mmd	stoploss	Mmd:NM_026178:exon7:c.A717C:p.X239C	11qC	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.488684644	2	0.008721048	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	94512334	12A2p6	cell line	sgMsh2	94512334	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	93	0	0	NA	exonic	Mycbpap	nonsynonymous SNV	Mycbpap:NM_170671:exon6:c.A635G:p.K212R	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.572839	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	106	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	1	1	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	94695668	12A2p6	cell line	sgMsh2	94695668	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	116	0	0	NA	exonic	Gm11541	synonymous SNV	Gm11541:NM_001007584:exon2:c.T252C:p.D84D	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.8360278	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	114	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.72397725	1	0.9999047	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	95065939	12A2p6	cell line	sgMsh2	95065939	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	98	0	0	NA	exonic	Itga3	nonsynonymous SNV	"Itga3:NM_001306071:exon3:c.A395G:p.Y132C,Itga3:NM_013565:exon4:c.A488G:p.Y163C,Itga3:NM_001306162:exon5:c.A488G:p.Y163C"	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9794801	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	80	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.425336634	2	0.9986239	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.1569	51	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.709950191	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
09-2_par	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	92	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.665154098	1	0.9875224	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr11	99780487	12A2p6	cell line	sgMsh2	99780487	C	T	SNV	Mutect2;Vardict	2	0.063	353	0	0	NA	exonic	Krtap4-8	nonsynonymous SNV	Krtap4-8:NM_001085547:exon1:c.G157A:p.V53M	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.9989884	ACA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	95	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	1	1	1.13E-09	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	102205371	12A2p6	cell line	sgMsh2	102205371	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.093	66	0	0	NA	exonic	Hdac5	synonymous SNV	"Hdac5:NM_001077696:exon9:c.C921T:p.P307P,Hdac5:NM_001284250:exon9:c.C918T:p.P306P,Hdac5:NM_010412:exon9:c.C918T:p.P306P,Hdac5:NM_001284249:exon10:c.C795T:p.P265P,Hdac5:NM_001361596:exon10:c.C795T:p.P265P,Hdac5:NM_001284248:exon11:c.C975T:p.P325P"	11qD	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.420811777	2	0.9952597	CGG	synonymous	NA	NA	NA	NA
09-2_par	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	43	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.823524122	1	0.9973687	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr11	106261910	12A2p6	cell line	sgMsh2	106261910	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	192	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon6:c.T557C:p.V186A	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9991499	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	107073916	12A2p6	cell line	sgMsh2	107073916	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	167	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon11:c.A4106G:p.N1369S,Bptf:NM_176850:exon11:c.A4106G:p.N1369S"	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5849236	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	139	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.9447712	ATA	synonymous	ATAA	8	ATAAATAA	NA
09-2_par	chr11	109677242	12A2p6	cell line	sgMsh2	109677242	A	T	SNV	Mutect2;Vardict	2	0.083	51	0	0	NA	exonic	Fam20a	nonsynonymous SNV	Fam20a:NM_153782:exon7:c.T1021A:p.S341T	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9688777	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	135	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9991602	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	88	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.9959016	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	51	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.692303245	1	0.9612911	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	70	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.8665985	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	116607343	12A2p6	cell line	sgMsh2	116607343	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	43	0	0	NA	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon3:c.A29G:p.N10S,Rhbdf2:NM_172572:exon3:c.A29G:p.N10S"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.8032501	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	64	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.624430378	1	0.8243449	GTG	synonymous	NA	NA	NA	NA
09-2_par	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.17	34	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.769225828	1	0.9743195	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr11	117760838	12A2p6	cell line	sgMsh2	117760838	G	A	SNV	Mutect2;Vardict	2	0.167	17	0	0	NA	exonic	Tnrc6c	nonsynonymous SNV	Tnrc6c:NM_198022:exon22:c.G5690A:p.G1897D	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.755651255	1	0.8417742	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	83	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.954744998	1	2.15E-08	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.12	81	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.542982937	2	0.8603569	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	119466411	12A2p6	cell line	sgMsh2	119466411	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	80	0	0	NA	exonic	Rnf213	synonymous SNV	Rnf213:NM_001040005:exon49:c.G12786A:p.Q4262Q	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.8725266	AGC	synonymous	NA	NA	NA	NA
09-2_par	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Vardict	2	0.173	23	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.782800402	1	0.933027	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Vardict	2	0.041	132	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9798971	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	69	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.61990552	1	0.8158909	TAC	nonsynonymous	C	5	CCCCC	NA
09-2_par	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	83	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.959269856	1	1.75E-08	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	89	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	0.334839478	2	0.9843169	GTG	synonymous	NA	NA	NA	NA
09-2_par	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	56	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999985	ACA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999919	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	13390999	12A2p6	cell line	sgMsh2	13390999	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.082	115	0	0	NA	exonic	Nbas	frameshift deletion	Nbas:NM_027706:exon29:c.3329delC:p.T1110Sfs*30	12qA1.1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.371038341	NA	NA	ACG	frameshift	NA	NA	NA	-1
09-2_par	chr12	17373600	12A2p6	cell line	sgMsh2	17373600	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	208	0	0	NA	exonic	Nol10	synonymous SNV	Nol10:NM_001008421:exon12:c.T945C:p.L315L	12qA1.1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.153845166	3	0.9999303	TTA	synonymous	NA	NA	NA	NA
09-2_par	chr12	24096961	12A2p6	cell line	sgMsh2	24096961	T	C	SNV	Mutect2;Vardict	2	0.048	111	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	"9030624G23Rik:NM_001256489:exon1:c.A8G:p.D3G,9030624G23Rik:NM_001382819:exon1:c.A8G:p.D3G"	12qA1.3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.217193175	3	0.81199	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	203	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.610855805	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	114	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.529408364	2	0.9689818	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	162	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.701352961	1	0.9999843	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	44571709	12A2p6	cell line	sgMsh2	44571709	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	111	0	0	NA	exonic	Nrcam	synonymous SNV	"Nrcam:NM_001146031:exon21:c.A2451C:p.P817P,Nrcam:NM_176930:exon22:c.A2481C:p.P827P"	12qB2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.221718033	3	0.770361	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	206	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.158370023	3	0.9998776	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	51371627	12A2p6	cell line	sgMsh2	51371627	A	C	SNV	Mutect2;Vardict	2	0.024	176	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001167964:exon13:c.A1453C:p.K485Q,G2e3:NM_001015099:exon14:c.A1735C:p.K579Q,G2e3:NM_001167963:exon15:c.A1804C:p.K602Q"	12qB3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.108596587	3	0.9999943	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	141	0	0	NA	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.316740047	2	0.9941733	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	51750327	12A2p6	cell line	sgMsh2	51750327	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	157	0	0	NA	exonic	Hectd1	synonymous SNV	Hectd1:NM_144788:exon37:c.T6612C:p.S2204S	12qB3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.153845166	3	0.9992296	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	163	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.9832556	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
09-2_par	chr12	52516677	12A2p6	cell line	sgMsh2	52516677	T	G	SNV	Mutect2;Vardict	2	0.02	311	0	0	NA	exonic	Arhgap5	nonsynonymous SNV	Arhgap5:NM_009706:exon1:c.T430G:p.F144V	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.090497156	3	1.03E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.344	170	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
09-2_par	chr12	59061204	12A2p6	cell line	sgMsh2	59061204	A	G	SNV	Mutect2;Vardict	2	0.057	73	0	0	NA	exonic	Trappc6b	synonymous SNV	"Trappc6b:NM_001306217:exon1:c.T33C:p.H11H,Trappc6b:NM_030057:exon1:c.T33C:p.H11H"	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.257916895	2	8.43E-07	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr12	59189790	12A2p6	cell line	sgMsh2	59189790	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	56	0	0	NA	exonic	Mia2	synonymous SNV	"Mia2:NM_001165253:exon23:c.G2310A:p.Q770Q,Mia2:NM_001165254:exon23:c.G2277A:p.Q759Q,Mia2:NM_001374760:exon25:c.G2409A:p.Q803Q,Mia2:NM_146034:exon25:c.G2376A:p.Q792Q,Mia2:NM_001329047:exon30:c.G4185A:p.Q1395Q,Mia2:NM_001368839:exon30:c.G4182A:p.Q1394Q"	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.334839478	2	0.9361423	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr12	64473084	12A2p6	cell line	sgMsh2	64473084	G	A	SNV	Mutect2;Vardict	2	0.031	242	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.C1607T:p.A536V	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999973	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	64967667	12A2p6	cell line	sgMsh2	64967667	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	169	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.T1691C:p.V564A,Togaram1:NM_177805:exon1:c.T1691C:p.V564A"	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.194568886	3	0.9862312	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	175	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.416286919	2	0.9999997	CAA	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	115	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.832573837	NA	NA	ATT	frameshift	NA	NA	NA	-1
09-2_par	chr12	65226339	12A2p6	cell line	sgMsh2	65226339	T	C	SNV	Mutect2;Vardict	2	0.022	281	0	0	NA	exonic	Wdr20rt	nonsynonymous SNV	Wdr20rt:NM_027614:exon1:c.T575C:p.L192P	12qC1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.099546872	3	2.04E-09	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	143	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.556557511	2	0.8901444	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	130	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	2	1	1	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	169	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.131220877	3	0.999936	GGC	synonymous	NA	NA	NA	NA
09-2_par	chr12	69818044	12A2p6	cell line	sgMsh2	69818044	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	254	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1863C:p.K621N	12qC2	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	164	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.203618602	3	0.9674449	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	183	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.180994312	3	0.9972517	CTC	nonsynonymous	C	5	CCCCC	NA
09-2_par	chr12	78494002	12A2p6	cell line	sgMsh2	78494002	C	T	SNV	Mutect2;Vardict	2	0.029	189	0	0	NA	exonic	Gphn	nonsynonymous SNV	Gphn:NM_145965:exon8:c.C782T:p.P261L	12qC3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999801	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	128	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.5791818	2	0.5536864	TCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	143	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.773750686	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	83226323	12A2p6	cell line	sgMsh2	83226323	T	G	SNV	Mutect2;Vardict	2	0.024	220	0	0	NA	exonic	Dpf3	nonsynonymous SNV	Dpf3:NM_001267625:exon9:c.A929C:p.K310T	12qD1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.108596587	3	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	83988044	12A2p6	cell line	sgMsh2	83988044	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	53	0	0	NA	exonic	Acot2	nonsynonymous SNV	Acot2:NM_134188:exon1:c.T143A:p.V48E	12qD1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.334839478	2	0.9276795	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	85296435	12A2p6	cell line	sgMsh2	85296435	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	179	0	0	NA	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon3:c.T1345C:p.W449R	12qD1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.18551917	3	0.9952872	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	98275498	12A2p6	cell line	sgMsh2	98275498	A	C	SNV	Mutect2;Vardict	2	0.025	204	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.A409C:p.S137R	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.113121445	3	0.9999987	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	159	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.9815318	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	166	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.755651255	1	0.9999999	TGA	synonymous	NA	NA	NA	NA
09-2_par	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.099	94	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.447960923	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
09-2_par	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	130	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.742076681	1	0.9999932	TTC	synonymous	NA	NA	NA	NA
09-2_par	chr12	104943411	12A2p6	cell line	sgMsh2	104943411	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	101	0	0	NA	exonic	Syne3	nonsynonymous SNV	"Syne3:NM_172500:exon14:c.G2165T:p.R722M,Syne3:NM_001042699:exon16:c.G2426T:p.R809M"	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.226242891	3	0.7006941	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	105191204	12A2p6	cell line	sgMsh2	105191204	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	303	0	0	NA	exonic	Tcl1b3	nonsynonymous SNV	Tcl1b3:NM_013772:exon1:c.T104C:p.V35A	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.113	70	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.511308933	NA	NA	TGT	frameshift	T	5	TTTTT	1
09-2_par	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	106	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.633480094	1	0.9575244	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	64	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.547507795	2	0.7811612	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	126	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.615380662	1	0.9167588	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	190	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.638004952	1	0.9977242	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr12	113490367	12A2p6	cell line	sgMsh2	113490367	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	334	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T803C:p.V268A	12qF1	chr12-3501831-114367242	6	4	2	0.94	4.253366344	NA	1	0.122171161	3	1.90E-09	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.097	188	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-116047424-119465464	6	4	2	0.94	4.253366344	NA	1	0.438911208	NA	NA	TAA	frameshift	NA	NA	NA	-1
09-2_par	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Vardict	2	0.031	130	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-116047424-119465464	6	4	2	0.94	4.253366344	NA	1	0.140270592	3	0.9988685	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	3577004	12A2p6	cell line	sgMsh2	3577004	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	148	0	0	NA	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon14:c.G2615A:p.S872N,Tasor2:NM_134063:exon14:c.G2945A:p.S982N"	13qA1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6608639	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	4593636	12A2p6	cell line	sgMsh2	4593636	A	G	SNV	Mutect2;Vardict	2	0.052	79	0	0	NA	exonic	Akr1e1	synonymous SNV	Akr1e1:NM_018859:exon9:c.T789C:p.D263D	13qA1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	6.79E-08	AAT	synonymous	NA	NA	NA	NA
09-2_par	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	184	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.429861492	2	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	22293996	12A2p6	cell line	sgMsh2	22293996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	311	0	0	NA	exonic	Vmn1r196	synonymous SNV	Vmn1r196:NM_001167541:exon1:c.T804C:p.T268T	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9999995	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr13	22442145	12A2p6	cell line	sgMsh2	22442145	G	A	SNV	Mutect2;Vardict	2	0.025	494	0	0	NA	exonic	Vmn1r-ps103	nonsynonymous SNV	Vmn1r-ps103:NM_134211:exon1:c.G874A:p.D292N	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.113121445	3	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	23815081	12A2p6	cell line	sgMsh2	23815081	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	156	0	0	NA	exonic	Slc17a2	synonymous SNV	"Slc17a2:NM_001377113:exon4:c.A456T:p.T152T,Slc17a2:NM_144836:exon4:c.A456T:p.T152T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.149320308	3	0.9994337	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr13	24069691	12A2p6	cell line	sgMsh2	24069691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	118	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon27:c.G2444A:p.R815H,Carmil1:NM_001384122:exon27:c.G2444A:p.R815H,Carmil1:NM_026825:exon28:c.G2456A:p.R819H"	13qA3.1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9994796	ACG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	30381285	12A2p6	cell line	sgMsh2	30381285	A	C	SNV	Mutect2;Vardict	2	0.03	176	0	0	NA	exonic	Agtr1a	nonsynonymous SNV	Agtr1a:NM_177322:exon3:c.A332C:p.N111T	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999366	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	32721974	12A2p6	cell line	sgMsh2	32721974	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	87	0	0	NA	exonic	Mylk4	nonsynonymous SNV	Mylk4:NM_001368880:exon8:c.A1243G:p.I415V	13qA3.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9694577	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	11	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	2	1	1	0.9316218	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	68	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.5791818	2	0.5295781	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	46778973	12A2p6	cell line	sgMsh2	46778973	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.087	164	0	0	NA	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon26:c.A3243T:p.V1081V	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.39366263	2	0.9999954	TTA	synonymous	TC	9	TCTCTCTCT	NA
09-2_par	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	77	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.570214	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	49446385	12A2p6	cell line	sgMsh2	49446385	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	70	0	0	NA	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon9:c.T866G:p.F289C,Ippk:NM_199056:exon9:c.T719G:p.F240C"	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.39366263	2	0.9948795	TTC	nonsynonymous	CTT	10	CTTCTTCTTC	NA
09-2_par	chr13	49622886	12A2p6	cell line	sgMsh2	49622886	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	98	0	0	NA	exonic	Ogn	nonsynonymous SNV	Ogn:NM_008760:exon7:c.T800C:p.I267T	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9310481	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	82	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.805424691	1	0.9999719	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	50701766	12A2p6	cell line	sgMsh2	50701766	A	G	SNV	Mutect2;Vardict	2	0.042	171	0	0	NA	exonic	Gm8765	nonsynonymous SNV	Gm8765:NM_001244649:exon4:c.A1439G:p.K480R	13qA5	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9911107	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	43	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
09-2_par	chr13	54738506	12A2p6	cell line	sgMsh2	54738506	T	C	SNV	Mutect2;Vardict	2	0.052	101	0	0	NA	exonic	Gprin1	nonsynonymous SNV	"Gprin1:NM_001316710:exon2:c.A1954G:p.T652A,Gprin1:NM_012014:exon3:c.A1954G:p.T652A"	13qB1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.5964853	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	149	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9999967	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Vardict	2	0.068	60	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.307690331	2	0.8855469	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr13	64920572	12A2p6	cell line	sgMsh2	64920572	A	C	SNV	Mutect2;Vardict	2	0.042	122	0	0	NA	exonic	Spata31	nonsynonymous SNV	Spata31:NM_030047:exon3:c.A533C:p.E178A	13qB3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9643242	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	131	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.742076681	NA	NA	TAG	frameshift	NA	NA	NA	-1
09-2_par	chr13	70602885	12A2p6	cell line	sgMsh2	70602885	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	93	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5081A:p.G1694D	13qC1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.194568886	3	0.09564012	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	121	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	81397397	12A2p6	cell line	sgMsh2	81397397	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	100	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon78:c.A16768C:p.I5590L	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.8078595	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	81479769	12A2p6	cell line	sgMsh2	81479769	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	119	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon53:c.C10972T:p.L3658L	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	0.5574549	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	87	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.542982937	2	0.8757014	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	91772770	12A2p6	cell line	sgMsh2	91772770	A	C	SNV	Mutect2;Vardict	2	0.087	45	0	0	NA	exonic	Acot12	nonsynonymous SNV	Acot12:NM_028790:exon10:c.A994C:p.I332L	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.39366263	2	0.9645156	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	92342317	12A2p6	cell line	sgMsh2	92342317	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	117	0	0	NA	exonic	Msh3	synonymous SNV	"Msh3:NM_001311120:exon8:c.T1143G:p.P381P,Msh3:NM_010829:exon8:c.T1143G:p.P381P"	13qC3	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.8606701	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr13	100300288	12A2p6	cell line	sgMsh2	100300288	A	G	SNV	Mutect2;Vardict	2	0.017	622	0	0	NA	exonic	Naip6;Naip7	nonsynonymous SNV	"Naip6:NM_010871:exon9:c.T1726C:p.C576R,Naip7:NM_021545:exon10:c.T1726C:p.C576R"	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.076922583	3	1	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	100316293	12A2p6	cell line	sgMsh2	100316293	A	G	SNV	Mutect2;Vardict	2	0.00953	951	0	0	NA	exonic	Naip6;Naip7	nonsynonymous SNV	"Naip6:NM_010871:exon1:c.T259C:p.Y87H,Naip7:NM_021545:exon2:c.T259C:p.Y87H"	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.043121895	3	1	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	105445360	12A2p6	cell line	sgMsh2	105445360	T	C	SNV	Mutect2;Vardict	2	0.081	47	0	0	NA	exonic	Htr1a	synonymous SNV	Htr1a:NM_008308:exon1:c.T1107C:p.P369P	13qD1	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.951791	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr13	112962851	12A2p6	cell line	sgMsh2	112962851	A	G	SNV	Mutect2;Vardict	2	0.066	61	0	0	NA	exonic	Dhx29	nonsynonymous SNV	Dhx29:NM_172594:exon22:c.A3409G:p.I1137V	13qD2.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.8580196	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr13	113209982	12A2p6	cell line	sgMsh2	113209982	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	65	0	0	NA	exonic	Esm1	nonsynonymous SNV	Esm1:NM_023612:exon1:c.T140C:p.V47A	13qD2.2	chr13-3556297-119495179	4	2	2	0.94	4.253366344	NA	1	0.280541184	2	0.7875537	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	103	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.389137772	2	0.999472	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr14	12297605	12A2p6	cell line	sgMsh2	12297605	T	-	Deletion	Strelka2;Vardict	2	0.0521	96	0	0	NA	exonic	3830406C13Rik	frameshift deletion	"3830406C13Rik:NM_001284386:exon3:c.132delT:p.Q46Rfs*22,3830406C13Rik:NM_001284387:exon3:c.132delT:p.Q46Rfs*22,3830406C13Rik:NM_001284383:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_001284384:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_001284385:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_001379567:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_001379568:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_001379569:exon4:c.201delT:p.Q69Rfs*22,3830406C13Rik:NM_146051:exon4:c.201delT:p.Q69Rfs*79,3830406C13Rik:NM_178141:exon4:c.201delT:p.Q69Rfs*22"	14qA1	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.235745092	NA	NA	CTT	frameshift	NA	NA	NA	-1
09-2_par	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	101	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.493209502	2	0.9941934	GCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	130	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.8858331	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	20723139	12A2p6	cell line	sgMsh2	20723139	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	146	0	0	NA	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon26:c.T5275C:p.Y1759H,Zswim8:NM_027996:exon26:c.T5296C:p.Y1766H,Zswim8:NM_001252082:exon27:c.T5194C:p.Y1732H"	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.731111	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	20729276	12A2p6	cell line	sgMsh2	20729276	A	G	SNV	Mutect2;Vardict	2	0.099	42	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.T895C:p.Y299H	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.447960923	2	0.9514898	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	20729830	12A2p6	cell line	sgMsh2	20729830	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	123	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.G341T:p.S114I	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	0.9997817	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	21837886	12A2p6	cell line	sgMsh2	21837886	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	194	0	0	NA	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon5:c.T296C:p.I99T	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.117646303	3	0.9999961	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.3	81	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
09-2_par	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	68	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	93	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.572839	GAA	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	41	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.859722984	NA	NA	TCC	frameshift	NA	NA	NA	-1
09-2_par	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	60	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999994	TCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	109	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.488684644	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	93	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	1	1	1.22E-09	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	114	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.877822416	1	5.15E-09	AGC	synonymous	NA	NA	NA	NA
09-2_par	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	49	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.904971562	1	0.9998829	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	1	1	8.88E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	37082803	12A2p6	cell line	sgMsh2	37082803	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	129	0	0	NA	exonic	Cdhr1	synonymous SNV	Cdhr1:NM_130878:exon13:c.A1449G:p.P483P	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.7596013	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	40	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7548571-41174827	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999298	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	79	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	1	1	7.20E-09	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.482	53	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
09-2_par	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	225	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9998114	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	49682393	12A2p6	cell line	sgMsh2	49682393	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	176	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon8:c.A2280C:p.Q760H,Armh4:NM_026142:exon8:c.A2283C:p.Q761H"	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5863867	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	50127283	12A2p6	cell line	sgMsh2	50127283	G	T	SNV	Mutect2;Vardict	2	0.027	274	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.G705T:p.K235N	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	4.05E-08	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	116	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9931157	TAA	synonymous	NA	NA	NA	NA
09-2_par	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Vardict	2	0.023	268	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.10407173	3	6.03E-09	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Vardict	2	0.027	230	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	0.9999994	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	77	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.638004952	1	0.9213098	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	66	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.751126397	1	0.9983116	CGT	synonymous	NA	NA	NA	NA
09-2_par	chr14	51195767	12A2p6	cell line	sgMsh2	51195767	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	214	0	0	NA	exonic	Ang2	nonsynonymous SNV	Ang2:NM_007449:exon1:c.A157G:p.M53V	14qC1	chr14-44852972-51204411	4	2	2	0.94	4.253366344	NA	1	0.221718033	3	0.9274357	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	55	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-51825616-52811780	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999981	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	112	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-51825616-52811780	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
09-2_par	chr14	52463354	12A2p6	cell line	sgMsh2	52463354	T	C	SNV	Mutect2;Vardict	2	0.059	161	0	0	NA	exonic	Olfr1508	synonymous SNV	Olfr1508:NM_020513:exon2:c.A654G:p.V218V	14qC2	chr14-51825616-52811780	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.8587297	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	65	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.823524122	1	0.9998741	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	54953351	12A2p6	cell line	sgMsh2	54953351	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	102	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon22:c.A2866G:p.I956V,Myh6:NM_010856:exon22:c.A2866G:p.I956V"	14qC2	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8445421	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	61	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.82804898	1	0.9998131	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	71	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.814474406	1	0.9999207	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Vardict	2	0.035	270	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9999931	TTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	101	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	1	1	1.03E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	69	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
09-2_par	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	147	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.895921847	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	66057603	12A2p6	cell line	sgMsh2	66057603	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	134	0	0	NA	exonic	Adam2	synonymous SNV	Adam2:NM_009618:exon9:c.T792C:p.L264L	14qD1	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.244342322	2	0.5039798	CAA	synonymous	NA	NA	NA	NA
09-2_par	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	81	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.895921847	1	0.9999995	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	89	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	1	1	1.57E-09	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr14	84533362	12A2p6	cell line	sgMsh2	84533362	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	100	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon4:c.G3279A:p.Q1093Q	14qD3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9984061	AGA	synonymous	NA	NA	NA	NA
09-2_par	chr14	86984883	12A2p6	cell line	sgMsh2	86984883	A	C	SNV	Mutect2;Vardict	2	0.041	100	0	0	NA	exonic	Diaph3	synonymous SNV	Diaph3:NM_019670:exon12:c.T1197G:p.V399V	14qE1	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9472673	AAA	synonymous	NA	NA	NA	NA
09-2_par	chr14	103123316	12A2p6	cell line	sgMsh2	103123316	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	41	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon80:c.T13529C:p.I4510T	14qE2.3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.452485781	2	0.9442894	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Vardict	2	0.034	154	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	0.9991127	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	126	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.257916895	2	0.7087081	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	113	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	64	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.443436066	2	0.9924283	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	127	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	4	2	2	0.94	4.253366344	NA	1	0.8687727	1	1.89E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	55	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	132	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	77	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	1	1	1.10E-08	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
09-2_par	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	72	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.932120709	1	0.9999995	ATG	synonymous	A	5	AAAAA	NA
09-2_par	chr15	4938378	12A2p6	cell line	sgMsh2	4938378	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	124	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon29:c.A2898T:p.L966L	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.8089398	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr15	8359104	12A2p6	cell line	sgMsh2	8359104	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	200	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon9:c.T1031C:p.M344T,Nipbl:NM_201232:exon9:c.T1031C:p.M344T"	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9961377	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	92	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.886872131	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	25986906	12A2p6	cell line	sgMsh2	25986906	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	136	0	0	NA	exonic	Zfp622	nonsynonymous SNV	Zfp622:NM_144523:exon2:c.T743C:p.I248T	15qB1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8983946	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	28333059	12A2p6	cell line	sgMsh2	28333059	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	195	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon40:c.T6605G:p.I2202S	15qB1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.8649911	ATT	nonsynonymous	TTGA	8	TTGATTGA	NA
09-2_par	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	29	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.601806089	1	0.5783019	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	31617121	12A2p6	cell line	sgMsh2	31617121	T	G	SNV	Mutect2;Vardict	2	0.158	27	0	0	NA	exonic	Atpsckmt	nonsynonymous SNV	"Atpsckmt:NM_026546:exon5:c.T731G:p.L244R,Atpsckmt:NM_001356313:exon6:c.T497G:p.L166R"	15qB2	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.714927534	1	0.8854406	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	185	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.945695283	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
09-2_par	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	51	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	1	1	0.999995	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	54252349	12A2p6	cell line	sgMsh2	54252349	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	58	0	0	NA	exonic	Tnfrsf11b	nonsynonymous SNV	Tnfrsf11b:NM_008764:exon5:c.A851G:p.H284R	15qD1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.389137772	2	0.985816	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	54255987	12A2p6	cell line	sgMsh2	54255987	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	81	0	0	NA	exonic	Tnfrsf11b	nonsynonymous SNV	Tnfrsf11b:NM_008764:exon3:c.T590C:p.I197T	15qD1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9815113	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	60	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.656104383	1	0.9266962	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	116	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9931157	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	68101472	12A2p6	cell line	sgMsh2	68101472	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	95	0	0	NA	exonic	Zfat	nonsynonymous SNV	"Zfat:NM_001145888:exon15:c.A3473G:p.Q1158R,Zfat:NM_198644:exon15:c.A3419G:p.Q1140R"	15qD2	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.9210744	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	71525786	12A2p6	cell line	sgMsh2	71525786	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	107	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon6:c.T424C:p.F142L	15qD3	chr15-3279130-72007454	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.7819344	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	81	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	1	1	4.84E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	150	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	2	1	1	1	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	79	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.832573837	1	0.9999879	GCG	synonymous	NA	NA	NA	NA
09-2_par	chr15	76178977	12A2p6	cell line	sgMsh2	76178977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	57	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A7045G:p.T2349A,Plec:NM_201385:exon31:c.A6931G:p.T2311A,Plec:NM_201386:exon31:c.A6892G:p.T2298A,Plec:NM_201387:exon31:c.A6487G:p.T2163A,Plec:NM_201388:exon31:c.A6487G:p.T2163A,Plec:NM_201389:exon31:c.A7387G:p.T2463A,Plec:NM_201390:exon31:c.A6862G:p.T2288A,Plec:NM_201391:exon31:c.A6958G:p.T2320A,Plec:NM_201392:exon31:c.A6487G:p.T2163A,Plec:NM_201393:exon31:c.A6979G:p.T2327A,Plec:NM_201394:exon31:c.A6958G:p.T2320A,Plec:NM_001163540:exon32:c.A7402G:p.T2468A,Plec:NM_001163549:exon32:c.A6973G:p.T2325A,Plec:NM_001163542:exon33:c.A7096G:p.T2366A,Plec:NM_001164203:exon33:c.A6487G:p.T2163A"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.638004952	1	0.8604524	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.259	25	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	1	1	0.9974639	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.259	25	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	1	1	0.9974639	AGA	synonymous	NA	NA	NA	NA
09-2_par	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Vardict	2	0.048	111	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.217193175	NA	NA	GTT	frameshift	NA	NA	NA	-1
09-2_par	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	56	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.954744998	1	0.9999935	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	77635321	12A2p6	cell line	sgMsh2	77635321	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	126	0	0	NA	exonic	Apol11b	synonymous SNV	Apol11b:NM_001143686:exon4:c.T558C:p.S186S	15qE1	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.253392037	2	0.6461903	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	204	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.665154098	1	0.9999389	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	72	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.82804898	1	0.9999603	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	79317772	12A2p6	cell line	sgMsh2	79317772	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	46	0	0	NA	exonic	Pla2g6	synonymous SNV	"Pla2g6:NM_001199023:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199024:exon2:c.G198A:p.Q66Q,Pla2g6:NM_016915:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199025:exon3:c.G198A:p.Q66Q"	15qE1	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.511308933	2	0.8651799	TCT	synonymous	NA	NA	NA	NA
09-2_par	chr15	80348426	12A2p6	cell line	sgMsh2	80348426	T	C	SNV	Mutect2;Vardict	2	0.065	62	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon6:c.T629C:p.V210A	15qE1	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.294115758	2	0.8433855	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	192	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.276016327	2	0.9517444	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	97	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.968319572	1	1.49E-09	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	85097991	12A2p6	cell line	sgMsh2	85097991	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	99	0	0	NA	exonic	Smc1b	nonsynonymous SNV	Smc1b:NM_080470:exon13:c.A2101G:p.I701V	15qE2	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.230767748	3	0.6465377	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	85251509	12A2p6	cell line	sgMsh2	85251509	T	C	SNV	Mutect2;Vardict	2	0.071	57	0	0	NA	exonic	Fbln1	nonsynonymous SNV	Fbln1:NM_001347088:exon15:c.T1768C:p.Y590H	15qE2	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.321264905	2	0.9123768	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Vardict	2	0.034	152	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-72009072-89532764	5	3	2	0.94	4.253366344	NA	1	0.153845166	3	0.9990251	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	100000965	12A2p6	cell line	sgMsh2	100000965	A	G	SNV	Mutect2;Vardict	2	0.053	115	0	0	NA	exonic	Larp4	synonymous SNV	"Larp4:NM_001024526:exon11:c.A1236G:p.V412V,Larp4:NM_001080948:exon11:c.A1233G:p.V411V,Larp4:NM_001284521:exon11:c.A1059G:p.V353V,Larp4:NM_001284522:exon11:c.A1230G:p.V410V,Larp4:NM_001284523:exon11:c.A1239G:p.V413V"	15qF1	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.239817464	3	0.5536207	TAA	synonymous	NA	NA	NA	NA
09-2_par	chr15	100005290	12A2p6	cell line	sgMsh2	100005290	A	G	SNV	Mutect2;MuSe;Vardict	3	0.087	123	0	0	NA	exonic	Larp4	nonsynonymous SNV	"Larp4:NM_001024526:exon13:c.A1418G:p.D473G,Larp4:NM_001080948:exon13:c.A1415G:p.D472G,Larp4:NM_001284521:exon13:c.A1241G:p.D414G,Larp4:NM_001284522:exon13:c.A1412G:p.D471G,Larp4:NM_001284523:exon13:c.A1421G:p.D474G"	15qF1	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.39366263	2	0.9999043	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	40	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.787325259	1	0.9909308	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	101463426	12A2p6	cell line	sgMsh2	101463426	A	G	SNV	Mutect2;Vardict	2	0.03	210	0	0	NA	exonic	Krt81	nonsynonymous SNV	Krt81:NM_001166157:exon1:c.T272C:p.L91P	15qF2	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999906	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	101624082	12A2p6	cell line	sgMsh2	101624082	A	G	SNV	Mutect2;Vardict	2	0.056	94	0	0	NA	exonic	Gm5414	synonymous SNV	Gm5414:NM_001003670:exon9:c.T1605C:p.S535S	15qF2	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.253392037	2	0.6243523	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr15	101624117	12A2p6	cell line	sgMsh2	101624117	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	116	0	0	NA	exonic	Gm5414	nonsynonymous SNV	Gm5414:NM_001003670:exon9:c.A1570G:p.I524V	15qF2	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.244342322	2	0.5112056	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	102319787	12A2p6	cell line	sgMsh2	102319787	A	G	SNV	Mutect2;Vardict	2	0.07	71	0	0	NA	exonic	Espl1	synonymous SNV	"Espl1:NM_001014976:exon22:c.A4995G:p.P1665P,Espl1:NM_001356312:exon22:c.A4995G:p.P1665P"	15qF3	chr15-97698608-102454328	5	3	2	0.94	4.253366344	NA	1	0.316740047	2	0.937168	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr15	103199732	12A2p6	cell line	sgMsh2	103199732	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	104	0	0	NA	exonic	Cbx5	nonsynonymous SNV	"Cbx5:NM_001076789:exon5:c.A485C:p.Q162P,Cbx5:NM_001358950:exon5:c.A485C:p.Q162P,Cbx5:NM_007626:exon5:c.A485C:p.Q162P,Cbx5:NM_001110216:exon6:c.A485C:p.Q162P"	15qF3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	173	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
09-2_par	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	148	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
09-2_par	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	4084988	12A2p6	cell line	sgMsh2	4084988	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	123	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon31:c.A6386G:p.Q2129R	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	4085005	12A2p6	cell line	sgMsh2	4085005	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	133	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon31:c.A6369C:p.Q2123H	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	36	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
09-2_par	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	52	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.9604496	CAA	synonymous	NA	NA	NA	NA
09-2_par	chr16	9669768	12A2p6	cell line	sgMsh2	9669768	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	98	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon6:c.T1265C:p.I422T	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.9260355	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	111	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.701352961	1	0.9994878	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	115	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.841623553	1	3.90E-08	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	13127664	12A2p6	cell line	sgMsh2	13127664	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	75	0	0	NA	exonic	Ercc4	synonymous SNV	Ercc4:NM_015769:exon7:c.A1212T:p.P404P	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9531301	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	121	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.402712345	2	0.9999332	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	87	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.91E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	98	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.936645567	1	3.30E-09	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	77	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.10E-08	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	117	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.9788582	CTC	synonymous	NA	NA	NA	NA
09-2_par	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	30	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	2	1	1	0.9992322	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	45	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.981894145	1	0.9999662	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	19948167	12A2p6	cell line	sgMsh2	19948167	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	109	0	0	NA	exonic	Klhl6	synonymous SNV	Klhl6:NM_183390:exon6:c.T1476C:p.N492N	16qA3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8572584	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr16	20687417	12A2p6	cell line	sgMsh2	20687417	T	-	Deletion	Mutect2;Vardict	2	0.047	106	0	0	NA	exonic	Eif4g1	frameshift deletion	"Eif4g1:NM_001304432:exon27:c.4074delT:p.T1359Lfs*28,Eif4g1:NM_145941:exon28:c.4116delT:p.T1373Lfs*28"	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.212668317	NA	NA	CTA	frameshift	NA	NA	NA	-1
09-2_par	chr16	21220778	12A2p6	cell line	sgMsh2	21220778	A	G	SNV	Mutect2;Vardict	2	0.061	64	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2041G:p.M681V	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.7591417	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	21762633	12A2p6	cell line	sgMsh2	21762633	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	exonic	Ehhadh	synonymous SNV	Ehhadh:NM_023737:exon7:c.A1608G:p.G536G	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.997062	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	66	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.97284443	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	106	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.751126397	1	0.9999648	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	31791766	12A2p6	cell line	sgMsh2	31791766	C	A	SNV	Mutect2;Vardict	2	0.054	77	0	0	NA	exonic	Dlg1	synonymous SNV	"Dlg1:NM_001252436:exon6:c.C615A:p.T205T,Dlg1:NM_001357281:exon6:c.C477A:p.T159T,Dlg1:NM_001252433:exon9:c.C765A:p.T255T,Dlg1:NM_001252434:exon9:c.C765A:p.T255T,Dlg1:NM_001357282:exon9:c.C765A:p.T255T,Dlg1:NM_001252435:exon10:c.C864A:p.T288T,Dlg1:NM_007862:exon10:c.C864A:p.T288T"	16qB2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.244342322	2	0.5268413	CCC	synonymous	NA	NA	NA	NA
09-2_par	chr16	32107140	12A2p6	cell line	sgMsh2	32107140	A	C	SNV	Mutect2;Vardict	2	0.044	118	0	0	NA	exonic	Cep19	nonsynonymous SNV	Cep19:NM_025892:exon4:c.A365C:p.E122A	16qB2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9336482	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	102	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.03E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	192	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.873297558	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	33495785	12A2p6	cell line	sgMsh2	33495785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	134	0	0	NA	exonic	Zfp148	nonsynonymous SNV	"Zfp148:NM_001358569:exon9:c.A826G:p.M276V,Zfp148:NM_001358570:exon9:c.A826G:p.M276V,Zfp148:NM_011749:exon9:c.A826G:p.M276V"	16qB3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.9186402	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	71	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9916447	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	141	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	45244194	12A2p6	cell line	sgMsh2	45244194	T	A	SNV	Mutect2;Vardict	2	0.066	61	0	0	NA	exonic	Btla	nonsynonymous SNV	"Btla:NM_001037719:exon4:c.T508A:p.S170T,Btla:NM_177584:exon4:c.T505A:p.S169T"	16qB5	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.8580196	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	146	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	60	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.547507795	2	0.7673319	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	50202435	12A2p6	cell line	sgMsh2	50202435	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	125	0	0	NA	exonic	Bbx	nonsynonymous SNV	"Bbx:NM_001347240:exon15:c.A2335T:p.I779F,Bbx:NM_027444:exon15:c.A2395T:p.I799F"	16qB5	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9671915	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	56261561	12A2p6	cell line	sgMsh2	56261561	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	90	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.T2855A:p.L952Q	16qC1.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6215845	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	116	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.945695283	1	1.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	56595308	12A2p6	cell line	sgMsh2	56595308	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	136	0	0	NA	exonic	Abi3bp	nonsynonymous SNV	"Abi3bp:NM_001014422:exon12:c.A1129G:p.T377A,Abi3bp:NM_001014423:exon12:c.A1129G:p.T377A,Abi3bp:NM_001014424:exon12:c.A1129G:p.T377A,Abi3bp:NM_178790:exon12:c.A1129G:p.T377A"	16qC1.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.9215534	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	1	1.02E-09	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	163	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
09-2_par	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	254	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9999195	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	59027069	12A2p6	cell line	sgMsh2	59027069	C	T	SNV	Mutect2;Vardict	2	0.025	204	0	0	NA	exonic	Olfr186	synonymous SNV	Olfr186:NM_146321:exon1:c.G837A:p.T279T	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.113121445	3	0.9999987	CCG	synonymous	NA	NA	NA	NA
09-2_par	chr16	59362061	12A2p6	cell line	sgMsh2	59362061	A	G	SNV	Mutect2;Vardict	2	0.021	670	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.T156C:p.P52P,Olfr209:NM_207551:exon1:c.T156C:p.P52P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.095022014	3	1	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.1571	70	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.710855162	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
09-2_par	chr16	65540209	12A2p6	cell line	sgMsh2	65540209	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	198	0	0	NA	exonic	Chmp2b	synonymous SNV	Chmp2b:NM_026879:exon6:c.C573T:p.A191A	16qC1.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	0.9998884	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.151	32	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.68325353	1	9.73E-05	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr16	85795596	12A2p6	cell line	sgMsh2	85795596	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	118	0	0	NA	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.T2712C:p.P904P	16qC3.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9336482	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	85	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.542982937	2	0.8707545	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	119	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.859722984	1	7.11E-09	CGC	synonymous	NA	NA	NA	NA
09-2_par	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	135	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr16	97596804	12A2p6	cell line	sgMsh2	97596804	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	63	0	0	NA	exonic	Tmprss2	synonymous SNV	Tmprss2:NM_015775:exon3:c.A171G:p.T57T	16qC4	chr16-4630421-97886207	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	0.9875809	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;MuSe;Vardict	3	0.075	220	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9999694	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	12232987	12A2p6	cell line	sgMsh2	12232987	A	-	Deletion	Mutect2;Vardict	2	0.048	108	0	0	NA	exonic	Map3k4	frameshift deletion	"Map3k4:NM_001357722:exon23:c.4257delT:p.F1419Lfs*4,Map3k4:NM_011948:exon24:c.4413delT:p.F1471Lfs*4"	17qA1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.217193175	NA	NA	CAA	frameshift	NA	NA	NA	-1
09-2_par	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;MuSe;Vardict	3	0.084	782	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	1	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Vardict	2	0.036	312	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.162894881	NA	NA	CTT	frameshift	NA	NA	NA	-1
09-2_par	chr17	18244283	12A2p6	cell line	sgMsh2	18244283	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	605	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A1744T:p.S582C	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	18305080	12A2p6	cell line	sgMsh2	18305080	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	210	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon3:c.T999C:p.F333F	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	0.9999366	TTA	synonymous	NA	NA	NA	NA
09-2_par	chr17	18325880	12A2p6	cell line	sgMsh2	18325880	T	C	SNV	Mutect2;Vardict	2	0.023	718	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon6:c.T2013C:p.I671I	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.10407173	3	1	TTA	synonymous	NA	NA	NA	NA
09-2_par	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.850673269	1	1.15E-09	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.169	415	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.76470097	1	1	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19066186	12A2p6	cell line	sgMsh2	19066186	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.02	403	0	0	NA	exonic	Vmn2r98	synonymous SNV	Vmn2r98:NM_001104550:exon3:c.C945T:p.D315D	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.090497156	3	1.00E-09	ACT	synonymous	NA	NA	NA	NA
09-2_par	chr17	19080915	12A2p6	cell line	sgMsh2	19080915	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	682	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon6:c.T2178G:p.H726Q	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.221718033	3	0.9998206	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19380034	12A2p6	cell line	sgMsh2	19380034	A	G	SNV	Mutect2;Vardict	2	0.046	241	0	0	NA	exonic	Vmn2r99	nonsynonymous SNV	Vmn2r99:NM_001104551:exon4:c.A1319G:p.K440R	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.9894828	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Vardict	2	0.023	312	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.10407173	3	1.21E-09	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19677505	12A2p6	cell line	sgMsh2	19677505	T	-	Deletion	Mutect2;Vardict	2	0.041	429	0	0	NA	exonic	Vmn2r102	frameshift deletion	Vmn2r102:NM_001104564:exon3:c.781delT:p.F261Sfs*9	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.18551917	NA	NA	ATT	frameshift	NA	NA	NA	-1
09-2_par	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	669	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.547507795	2	0.9999982	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Vardict	2	0.024	418	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.108596587	3	1.00E-09	GTA	synonymous	NA	NA	NA	NA
09-2_par	chr17	20208582	12A2p6	cell line	sgMsh2	20208582	G	T	SNV	Mutect2;Vardict	2	0.024	382	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon6:c.C2225A:p.S742Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.108596587	3	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	20471345	12A2p6	cell line	sgMsh2	20471345	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	229	0	0	NA	exonic	Vmn2r108	synonymous SNV	Vmn2r108:NM_001104570:exon3:c.T915C:p.H305H	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.162894881	3	0.9999265	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr17	20687852	12A2p6	cell line	sgMsh2	20687852	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	257	0	0	NA	exonic	Vmn1r226	synonymous SNV	Vmn1r226:NM_134191:exon1:c.C345T:p.S115S	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.9756676	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr17	20688266	12A2p6	cell line	sgMsh2	20688266	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	143	0	0	NA	exonic	Vmn1r226	synonymous SNV	Vmn1r226:NM_134191:exon1:c.A759G:p.L253L	17qA3.2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.9493457	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Vardict	2	0.041	305	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.999907	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	22602492	12A2p6	cell line	sgMsh2	22602492	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	217	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.A445G:p.T149A	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.149320308	3	0.9999722	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	92	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.9977654	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	24442441	12A2p6	cell line	sgMsh2	24442441	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	184	0	0	NA	exonic	Dnase1l2	nonsynonymous SNV	Dnase1l2:NM_025718:exon3:c.T197A:p.L66Q	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9982499	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	24451531	12A2p6	cell line	sgMsh2	24451531	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	74	0	0	NA	exonic	E4f1	nonsynonymous SNV	"E4f1:NM_001301784:exon2:c.C181A:p.R61S,E4f1:NM_007893:exon2:c.C181A:p.R61S"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9746172	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	25857241	12A2p6	cell line	sgMsh2	25857241	A	C	SNV	Mutect2;Vardict	2	0.055	91	0	0	NA	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon11:c.T1477G:p.S493A	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5725112	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	25861040	12A2p6	cell line	sgMsh2	25861040	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	85	0	0	NA	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon2:c.T320C:p.V107A	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.8624512	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	25861061	12A2p6	cell line	sgMsh2	25861061	A	G	SNV	Mutect2;Vardict	2	0.06	82	0	0	NA	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon2:c.T299C:p.V100A	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.7719326	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	60	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.832573837	1	0.9998158	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	33	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.705877819	1	0.9114619	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr17	27434667	12A2p6	cell line	sgMsh2	27434667	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	70	0	0	NA	exonic	Grm4	nonsynonymous SNV	"Grm4:NM_001013385:exon8:c.T2308C:p.Y770H,Grm4:NM_001360192:exon8:c.T1684C:p.Y562H,Grm4:NM_001379317:exon8:c.T1684C:p.Y562H,Grm4:NM_001291045:exon9:c.T2308C:p.Y770H"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.407237203	2	0.9962467	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	110	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9970197	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	62	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9965767	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	28330960	12A2p6	cell line	sgMsh2	28330960	A	G	SNV	Mutect2;Vardict	2	0.041	126	0	0	NA	exonic	Rpl10a	nonsynonymous SNV	"Rpl10a:NM_001357628:exon6:c.A362G:p.Y121C,Rpl10a:NM_011287:exon6:c.A614G:p.Y205C"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9758591	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	29332745	12A2p6	cell line	sgMsh2	29332745	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.096	33	0	0	NA	exonic	Mtch1	nonsynonymous SNV	"Mtch1:NM_001347335:exon12:c.C1081T:p.R361C,Mtch1:NM_001357762:exon12:c.C796T:p.R266C,Mtch1:NM_001357763:exon12:c.C745T:p.R249C,Mtch1:NM_019880:exon12:c.C1132T:p.R378C"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.43438635	2	0.9118675	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	47	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.402712345	2	0.9725666	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
09-2_par	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	127	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.520358648	2	0.9889173	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.099	102	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.447960923	NA	NA	GTT	frameshift	T	5	TTTTT	-1
09-2_par	chr17	32305325	12A2p6	cell line	sgMsh2	32305325	T	G	SNV	Mutect2;Vardict	2	0.033	164	0	0	NA	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon12:c.A1654C:p.I552L,Akap8:NM_019774:exon14:c.A1996C:p.I666L"	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.149320308	3	0.9996185	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	33538279	12A2p6	cell line	sgMsh2	33538279	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	161	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon8:c.C9T:p.H3H,Adamts10:NM_001329143:exon9:c.C9T:p.H3H,Adamts10:NM_001329203:exon10:c.C102T:p.H34H,Adamts10:NM_172619:exon10:c.C1206T:p.H402H"	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.9652917	ACG	synonymous	NA	NA	NA	NA
09-2_par	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.142	39	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.642529809	1	0.792928	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	30	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	2	1	1	0.9992322	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	35127558	12A2p6	cell line	sgMsh2	35127558	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	69	0	0	NA	exonic	D17H6S53E	synonymous SNV	D17H6S53E:NM_033477:exon3:c.T444G:p.G148G	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.992831	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Vardict	2	0.078	50	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.352938909	2	0.9456943	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr17	37270790	12A2p6	cell line	sgMsh2	37270790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	64	0	0	NA	exonic	H2-M3	synonymous SNV	H2-M3:NM_013819:exon2:c.C342A:p.G114G	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.791850117	1	0.9995386	GCG	synonymous	NA	NA	NA	NA
09-2_par	chr17	37672494	12A2p6	cell line	sgMsh2	37672494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	477	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.T470C:p.M157T	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.6342972	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	37726645	12A2p6	cell line	sgMsh2	37726645	T	C	SNV	Mutect2;Vardict	2	0.013	529	0	0	NA	exonic	Olfr120	nonsynonymous SNV	Olfr120:NM_146631:exon1:c.T647C:p.V216A	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.058823152	3	1	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	370	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.660629241	1	0.9999999	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
09-2_par	chr17	37924208	12A2p6	cell line	sgMsh2	37924208	T	G	SNV	Mutect2;Vardict	2	0.013	719	0	0	NA	exonic	Olfr128	nonsynonymous SNV	Olfr128:NM_206816:exon1:c.T641G:p.I214S	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.058823152	3	1	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.109	162	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.493209502	NA	NA	AGA	frameshift	A	5	AAAAA	1
09-2_par	chr17	38335309	12A2p6	cell line	sgMsh2	38335309	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	213	0	0	NA	exonic	Olfr136	synonymous SNV	Olfr136:NM_146807:exon1:c.T151C:p.L51L	17qB1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9996173	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	211	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.986419003	1	1	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Vardict	2	0.031	131	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9989279	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	39	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.923070994	1	0.9995035	TGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	46687564	12A2p6	cell line	sgMsh2	46687564	G	-	Deletion	Mutect2;Vardict	2	0.048	126	0	0	NA	exonic	Ppp2r5d	frameshift deletion	"Ppp2r5d:NM_001357684:exon4:c.383delC:p.P128Hfs*9,Ppp2r5d:NM_009358:exon4:c.380delC:p.P127Hfs*9"	17qC	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.217193175	NA	NA	TGG	frameshift	NA	NA	NA	-1
09-2_par	chr17	52803482	12A2p6	cell line	sgMsh2	52803482	T	C	SNV	Mutect2;Vardict	2	0.062	66	0	0	NA	exonic	Kcnh8	synonymous SNV	Kcnh8:NM_001031811:exon5:c.T720C:p.P240P	17qC	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.280541184	2	8.85E-06	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	1	1	1.17E-09	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	151	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.43438635	2	0.9999966	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	64	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.9801624	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	66	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.601806089	1	0.6769315	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
09-2_par	chr17	66956935	12A2p6	cell line	sgMsh2	66956935	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	81	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_001357625:exon8:c.A1316C:p.N439T,Ptprm:NM_008984:exon8:c.A1316C:p.N439T"	17qE1.1	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.8936898	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	69238403	12A2p6	cell line	sgMsh2	69238403	A	-	Deletion	Mutect2;Vardict	2	0.06	117	0	0	NA	exonic	Epb41l3	frameshift deletion	"Epb41l3:NM_001355732:exon4:c.113delA:p.D40Tfs*37,Epb41l3:NM_001355733:exon4:c.464delA:p.D157Tfs*37,Epb41l3:NM_001355734:exon4:c.464delA:p.D157Tfs*37,Epb41l3:NM_001355735:exon4:c.464delA:p.D157Tfs*37,Epb41l3:NM_001355736:exon4:c.464delA:p.D157Tfs*37,Epb41l3:NM_013813:exon4:c.464delA:p.D157Tfs*37"	17qE1.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.271491469	NA	NA	GAA	frameshift	A	5	AAAAA	-1
09-2_par	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.298	8	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	1	1	0.8662815	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	70	0	0	NA	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9910809	GTG	synonymous	NA	NA	NA	NA
09-2_par	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	107	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.936645567	1	1.37E-09	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Vardict	2	0.04	106	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9649999	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	112	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.849818	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
09-2_par	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.518	30	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
09-2_par	chr17	88742385	12A2p6	cell line	sgMsh2	88742385	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.103	116	0	0	NA	exonic	Lhcgr	frameshift insertion	Lhcgr:NM_013582:exon11:c.1711dupA:p.I571Nfs*2	17qE4	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.466060355	NA	NA	AAT	frameshift	T	5	TTTTT	1
09-2_par	chr17	90630126	12A2p6	cell line	sgMsh2	90630126	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	80	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon8:c.T1878C:p.A626A,Nrxn1:NM_177284:exon8:c.T1866C:p.A622A,Nrxn1:NM_020252:exon10:c.T1902C:p.A634A"	17qE5	chr17-3079405-94740433	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.8508653	GAG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
09-2_par	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	145	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9997385	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
09-2_par	chr18	7268485	12A2p6	cell line	sgMsh2	7268485	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	118	0	0	NA	exonic	Armc4	nonsynonymous SNV	Armc4:NM_001357492:exon9:c.A1033C:p.I345L	18qA1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.194568886	3	0.9484709	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	73	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	1	1	2.71E-08	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	20283682	12A2p6	cell line	sgMsh2	20283682	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.021	394	0	0	NA	exonic	Dsg1c	nonsynonymous SNV	Dsg1c:NM_181680:exon15:c.C2639T:p.T880I	18qA2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.095022014	3	1.00E-09	ACC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	92	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	2	1	1	1.28E-09	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	22522505	12A2p6	cell line	sgMsh2	22522505	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	186	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.T3571C:p.S1191P	18qA2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	0.9998035	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	87	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	1	1	1.91E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	31720698	12A2p6	cell line	sgMsh2	31720698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	127	0	0	NA	exonic	Sap130	synonymous SNV	"Sap130:NM_001357554:exon20:c.A2943G:p.L981L,Sap130:NM_001357555:exon20:c.A3000G:p.L1000L,Sap130:NM_172965:exon20:c.A2940G:p.L980L"	18qB1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.18551917	3	0.9765832	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	53	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.411762061	2	0.9846233	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	80	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.72397725	1	0.9984903	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	106	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.760176112	1	0.9999797	TAC	synonymous	T	5	TTTTT	NA
09-2_par	chr18	36531700	12A2p6	cell line	sgMsh2	36531700	G	A	SNV	Mutect2;Vardict	2	0.042	96	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_001271544:exon10:c.G1259A:p.G420D,Slc4a9:NM_001271545:exon10:c.G1259A:p.G420D,Slc4a9:NM_001271546:exon10:c.G1259A:p.G420D,Slc4a9:NM_001271547:exon10:c.G1259A:p.G420D"	18qB2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9272413	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	36946559	12A2p6	cell line	sgMsh2	36946559	T	C	SNV	Mutect2;Vardict	2	0.023	365	0	0	NA	exonic	Pcdha3	nonsynonymous SNV	Pcdha3:NM_138662:exon1:c.T353C:p.V118A	18qB2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.10407173	3	1.00E-09	GTG	nonsynonymous	GTGGAG	15	GTGGAGGTGGAGGTG	NA
09-2_par	chr18	36993230	12A2p6	cell line	sgMsh2	36993230	T	C	SNV	Mutect2;MuSe;Vardict	3	0.058	249	0	0	NA	exonic	Pcdha8	nonsynonymous SNV	Pcdha8:NM_201243:exon1:c.T764C:p.V255A	18qB2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.8907249	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	231	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9998069	ATT	synonymous	ATT	9	ATTATTATT	NA
09-2_par	chr18	37308969	12A2p6	cell line	sgMsh2	37308969	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.017	377	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.A1331G:p.N444S	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.076922583	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37342583	12A2p6	cell line	sgMsh2	37342583	T	C	SNV	Mutect2;Vardict	2	0.028	182	0	0	NA	exonic	Pcdhb7	synonymous SNV	Pcdhb7:NM_053132:exon1:c.T771C:p.A257A	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.126696019	3	0.9999802	CTC	synonymous	NA	NA	NA	NA
09-2_par	chr18	37402610	12A2p6	cell line	sgMsh2	37402610	G	T	SNV	Mutect2;MuSe;Vardict	3	0.058	240	0	0	NA	exonic	Pcdhb9	nonsynonymous SNV	Pcdhb9:NM_053134:exon1:c.G1656T:p.R552S	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.8839813	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37421758	12A2p6	cell line	sgMsh2	37421758	A	G	SNV	Mutect2;Vardict	2	0.028	333	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.A140G:p.N47S	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.126696019	3	3.04E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37498459	12A2p6	cell line	sgMsh2	37498459	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	349	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.A1306T:p.T436S	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.167419739	3	0.999999	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	154	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	2	1	1	1	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37696800	12A2p6	cell line	sgMsh2	37696800	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	96	0	0	NA	exonic	Pcdhga5	nonsynonymous SNV	Pcdhga5:NM_033588:exon1:c.A2300G:p.H767R	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.334839478	2	0.9884205	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37716611	12A2p6	cell line	sgMsh2	37716611	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	191	0	0	NA	exonic	Pcdhga7	nonsynonymous SNV	Pcdhga7:NM_033590:exon1:c.A1670T:p.K557M	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.9949953	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37721926	12A2p6	cell line	sgMsh2	37721926	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	214	0	0	NA	exonic	Pcdhgb4	nonsynonymous SNV	Pcdhgb4:NM_033576:exon1:c.A1373G:p.H458R	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999954	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	170	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.737551823	1	0.9999997	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	88	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.936645567	1	1.85E-08	GTT	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	421	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.438911208	2	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Vardict	2	0.124	32	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.561082369	2	0.5949056	CGA	synonymous	NA	NA	NA	NA
09-2_par	chr18	53718464	12A2p6	cell line	sgMsh2	53718464	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	92	0	0	NA	exonic	Cep120	synonymous SNV	Cep120:NM_178686:exon12:c.T1755C:p.P585P	18qD1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.33031462	2	0.9830738	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	61	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	0.9857566	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	99	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5738223	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	76298470	12A2p6	cell line	sgMsh2	76298470	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	164	0	0	NA	exonic	Smad2	synonymous SNV	"Smad2:NM_001311070:exon5:c.T663C:p.P221P,Smad2:NM_001252481:exon7:c.T753C:p.P251P,Smad2:NM_010754:exon7:c.T753C:p.P251P"	18qE3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.162894881	3	0.9988319	CTA	synonymous	CTA	8	CTACTACT	NA
09-2_par	chr18	80128696	12A2p6	cell line	sgMsh2	80128696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	97	0	0	NA	exonic	Adnp2	nonsynonymous SNV	Adnp2:NM_175028:exon4:c.T2497C:p.Y833H	18qE3	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.9984001	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	100	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.457010639	2	0.9992065	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	101	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.633480094	1	0.9511107	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr18	86498950	12A2p6	cell line	sgMsh2	86498950	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	87	0	0	NA	exonic	Neto1	nonsynonymous SNV	"Neto1:NM_001360910:exon7:c.A803G:p.K268R,Neto1:NM_144946:exon9:c.A1391G:p.K464R"	18qE4	chr18-5046666-88869177	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.7467761	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	112	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	116	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	3659246	12A2p6	cell line	sgMsh2	3659246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	58	0	0	NA	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon2:c.T483C:p.H161H	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr19	4290661	12A2p6	cell line	sgMsh2	4290661	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	181	0	0	NA	exonic	Grk2	nonsynonymous SNV	"Grk2:NM_001290818:exon10:c.A769G:p.M257V,Grk2:NM_130863:exon11:c.A643G:p.M215V"	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.661	63	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	99	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	88	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	5368515	12A2p6	cell line	sgMsh2	5368515	A	G	SNV	Mutect2;Vardict	2	0.021	244	0	0	NA	exonic	Eif1ad	nonsynonymous SNV	Eif1ad:NM_027236:exon3:c.A181G:p.I61V	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	5569855	12A2p6	cell line	sgMsh2	5569855	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.046	128	0	0	NA	exonic	Ap5b1	frameshift deletion	"Ap5b1:NM_001033448:exon2:c.1302delC:p.P435Hfs*39,Ap5b1:NM_001362046:exon3:c.1302delC:p.P435Hfs*39"	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GCC	frameshift	NA	NA	NA	-1
09-2_par	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	111	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	107	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Vardict	2	0.137	32	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-7285297	7	5	2	0.94	4.253366344	NA	1	0.61990552	1	0.6646212	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	100	0	0	NA	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-7285297	7	5	2	0.94	4.253366344	NA	1	0.380088056	2	0.9989825	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	55	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-7285297	7	5	2	0.94	4.253366344	NA	2	0.855198127	1	0.9998149	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	8344569	12A2p6	cell line	sgMsh2	8344569	A	G	SNV	Mutect2;Vardict	2	0.038	163	0	0	NA	exonic	Slc22a30	synonymous SNV	Slc22a30:NM_177002:exon7:c.T1224C:p.T408T	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.171944597	3	0.9974436	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr19	9003288	12A2p6	cell line	sgMsh2	9003288	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	238	0	0	NA	exonic	Ahnak	synonymous SNV	Ahnak:NM_009643:exon5:c.A1935G:p.E645E	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.153845166	3	0.999983	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr19	9016193	12A2p6	cell line	sgMsh2	9016193	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	175	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14840T:p.N4947I	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.208143459	3	0.9621817	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	91	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.628955236	1	0.9196512	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Vardict	2	0.021	296	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.095022014	3	1.17E-09	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Vardict	2	0.064	296	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.2895909	NA	NA	CTA	frameshift	NA	NA	NA	-1
09-2_par	chr19	13235088	12A2p6	cell line	sgMsh2	13235088	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	207	0	0	NA	exonic	Olfr1463	synonymous SNV	Olfr1463:NM_001011840:exon1:c.T837C:p.Y279Y	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.190044028	3	0.9968433	ATA	synonymous	NA	NA	NA	NA
09-2_par	chr19	13454083	12A2p6	cell line	sgMsh2	13454083	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	367	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T433C:p.C145R	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.113121445	3	1.02E-09	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
09-2_par	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;MuSe;Vardict	3	0.061	518	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	2	0.9995252	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
09-2_par	chr19	13502626	12A2p6	cell line	sgMsh2	13502626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	646	0	0	NA	exonic	Olfr1477	synonymous SNV	Olfr1477:NM_146696:exon2:c.T282C:p.N94N	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.438911208	2	1	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Vardict	2	0.061	314	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.276016327	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr19	13705156	12A2p6	cell line	sgMsh2	13705156	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	281	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A328G:p.T110A	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.212668317	3	0.9909615	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	176	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.809949548	1	1.11E-09	CGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	214	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.515833791	2	0.9997015	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr19	16666383	12A2p6	cell line	sgMsh2	16666383	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	143	0	0	NA	exonic	Vps13a	nonsynonymous SNV	Vps13a:NM_173028:exon47:c.T6128C:p.I2043T	19qA	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.194568886	3	0.9728479	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	17330062	12A2p6	cell line	sgMsh2	17330062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	168	0	0	NA	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.T298C:p.C100R,Gcnt1:NM_010265:exon3:c.T298C:p.C100R,Gcnt1:NM_173442:exon3:c.T298C:p.C100R"	19qB	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.660629241	1	0.9994763	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	21428623	12A2p6	cell line	sgMsh2	21428623	A	G	SNV	Mutect2;Vardict	2	0.046	109	0	0	NA	exonic	Gda	synonymous SNV	Gda:NM_010266:exon3:c.T240C:p.D80D	19qB	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.208143459	3	0.8730998	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr19	23213856	12A2p6	cell line	sgMsh2	23213856	C	A	SNV	Mutect2;Vardict	2	0.024	262	0	0	NA	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252685:exon21:c.G2514T:p.W838C,Smc5:NM_153808:exon21:c.G2742T:p.W914C,Smc5:NM_001252684:exon22:c.G2784T:p.W928C"	19qB	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.108596587	3	1.51E-08	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	162	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.701352961	1	0.9999843	CTC	synonymous	NA	NA	NA	NA
09-2_par	chr19	29602644	12A2p6	cell line	sgMsh2	29602644	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	166	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon25:c.A3844G:p.I1282V	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.230767748	3	0.7629557	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	42	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.520358648	2	0.8145582	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr19	33556346	12A2p6	cell line	sgMsh2	33556346	T	G	SNV	Mutect2;Vardict	2	0.043	172	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon11:c.A1085C:p.K362T	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.194568886	3	0.9872754	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	278	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.158370023	3	0.9999952	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	178	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.882347273	NA	NA	CAA	frameshift	C	5	CCCCC	-1
09-2_par	chr19	34950295	12A2p6	cell line	sgMsh2	34950295	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	158	0	0	NA	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon19:c.T2836C:p.F946L,Kif20b:NM_183046:exon19:c.T2956C:p.F986L"	19qC1	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.212668317	3	0.9268952	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	36119774	12A2p6	cell line	sgMsh2	36119774	A	G	SNV	Mutect2;Vardict	2	0.035	177	0	0	NA	exonic	Ankrd1	nonsynonymous SNV	Ankrd1:NM_013468:exon1:c.T8C:p.V3A	19qC2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.158370023	3	0.9995508	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	38057860	12A2p6	cell line	sgMsh2	38057860	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	147	0	0	NA	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon2:c.C60A:p.S20R,Cep55:NM_001164362:exon3:c.C60A:p.S20R,Cep55:NM_001360663:exon3:c.C60A:p.S20R,Cep55:NM_028760:exon3:c.C60A:p.S20R"	19qC2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.9752495	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	228	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.208143459	3	0.9864347	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	105	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.230767748	3	0.6580149	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	152	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.638004952	1	0.9923459	GAC	synonymous	NA	NA	NA	NA
09-2_par	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	85	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.533933222	2	0.9127787	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.61990552	1	0.865019	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	57	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.669678956	1	0.9454609	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	166	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.968319572	1	1	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	114	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.633480094	1	0.9661435	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	137	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.479634928	2	0.9996772	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	53919646	12A2p6	cell line	sgMsh2	53919646	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	141	0	0	NA	exonic	Pdcd4	nonsynonymous SNV	"Pdcd4:NM_001168491:exon6:c.T587C:p.M196T,Pdcd4:NM_001168492:exon6:c.T587C:p.M196T,Pdcd4:NM_011050:exon6:c.T587C:p.M196T"	19qD2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.203618602	3	0.9470317	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	55183768	12A2p6	cell line	sgMsh2	55183768	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	162	0	0	NA	exonic	Tectb	nonsynonymous SNV	Tectb:NM_009348:exon3:c.A319G:p.T107A	19qD2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.176469455	3	0.9961655	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	111	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.484159786	2	0.9980271	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	56843232	12A2p6	cell line	sgMsh2	56843232	A	G	SNV	Mutect2;Vardict	2	0.037	138	0	0	NA	exonic	Tdrd1	nonsynonymous SNV	"Tdrd1:NM_001002241:exon8:c.A1054G:p.I352V,Tdrd1:NM_001002238:exon9:c.A1054G:p.I352V,Tdrd1:NM_001002240:exon9:c.A1054G:p.I352V,Tdrd1:NM_031387:exon9:c.A1054G:p.I352V"	19qD2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.167419739	3	0.9951799	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	115	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-7285421-61227351	6	4	2	0.94	4.253366344	NA	1	0.493209502	2	0.9971428	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.945695283	1	3.59E-09	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.850673269	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	74	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	1	1	2.15E-08	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	31	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	1	1	0.9993955	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	25446325	12A2p6	cell line	sgMsh2	25446325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	87	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon42:c.T6610C:p.Y2204H,Abca2:NM_007379:exon42:c.T6607C:p.Y2203H"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.411762061	2	0.9991945	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	25504534	12A2p6	cell line	sgMsh2	25504534	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	153	0	0	NA	exonic	Fbxw5	synonymous SNV	"Fbxw5:NM_001356407:exon7:c.A1140C:p.R380R,Fbxw5:NM_001356408:exon8:c.A975C:p.R325R,Fbxw5:NM_013908:exon8:c.A1371C:p.R457R"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9925341	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr2	25939739	12A2p6	cell line	sgMsh2	25939739	A	C	SNV	Mutect2;Vardict	2	0.062	117	0	0	NA	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T1972G:p.F658V,Camsap1:NM_001276360:exon12:c.T2005G:p.F669V,Camsap1:NM_001276361:exon12:c.T2032G:p.F678V,Camsap1:NM_001372499:exon12:c.T2005G:p.F669V"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.280541184	2	0.8978547	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	26203125	12A2p6	cell line	sgMsh2	26203125	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	37	0	0	NA	exonic	Lhx3	synonymous SNV	"Lhx3:NM_001039653:exon3:c.G318A:p.Q106Q,Lhx3:NM_010711:exon3:c.G312A:p.Q104Q"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9284728	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	78	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.733026966	1	0.9988139	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	29065784	12A2p6	cell line	sgMsh2	29065784	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	81	0	0	NA	exonic	Ttf1	stopgain	Ttf1:NM_009442:exon2:c.A1159T:p.K387X	2qA3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9969258	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	29179716	12A2p6	cell line	sgMsh2	29179716	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	168	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon26:c.T7532C:p.L2511P	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6739414	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	59	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.873297558	1	0.9999463	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	68	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999999	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	31912023	12A2p6	cell line	sgMsh2	31912023	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	88	0	0	NA	exonic	Lamc3	nonsynonymous SNV	Lamc3:NM_011836:exon8:c.A1442T:p.H481L	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.8194377	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32096059	12A2p6	cell line	sgMsh2	32096059	A	G	SNV	Mutect2;Vardict	2	0.097	46	0	0	NA	exonic	Plpp7	nonsynonymous SNV	"Plpp7:NM_001355238:exon1:c.A248G:p.N83S,Plpp7:NM_145521:exon1:c.A248G:p.N83S"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.438911208	2	0.9686548	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	159	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.624430378	1	0.9792346	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32672230	12A2p6	cell line	sgMsh2	32672230	C	A	SNV	Mutect2;Vardict	2	0.055	56	0	0	NA	exonic	Eng	nonsynonymous SNV	"Eng:NM_001146348:exon5:c.C539A:p.P180Q,Eng:NM_001146350:exon5:c.C542A:p.P181Q,Eng:NM_007932:exon5:c.C542A:p.P181Q"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5667557	CCA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32708204	12A2p6	cell line	sgMsh2	32708204	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	101	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon7:c.A839T:p.K280M	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.997635	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32709892	12A2p6	cell line	sgMsh2	32709892	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	65	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.T485A:p.V162D	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.574656942	2	0.5700311	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.218	64	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.986419003	1	0.9999996	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	35191553	12A2p6	cell line	sgMsh2	35191553	A	G	SNV	Mutect2;Vardict	2	0.039	116	0	0	NA	exonic	Rab14	nonsynonymous SNV	Rab14:NM_026697:exon3:c.T65C:p.V22A	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.980459	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	54	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999975	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	37201769	12A2p6	cell line	sgMsh2	37201769	T	C	SNV	Mutect2;Vardict	2	0.04	199	0	0	NA	exonic	Olfr365	nonsynonymous SNV	Olfr365:NM_146662:exon1:c.T527C:p.I176T	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9983895	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	37202003	12A2p6	cell line	sgMsh2	37202003	-	T	Insertion	Mutect2;Vardict	2	0.059	194	0	0	NA	exonic	Olfr365	frameshift insertion	Olfr365:NM_146662:exon1:c.762dupT:p.G255Wfs*7	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.266966611	NA	NA	TAT	frameshift	NA	NA	NA	1
09-2_par	chr2	37411240	12A2p6	cell line	sgMsh2	37411240	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	127	0	0	NA	exonic	Rc3h2	synonymous SNV	"Rc3h2:NM_001100591:exon4:c.A249G:p.S83S,Rc3h2:NM_001290642:exon4:c.A249G:p.S83S"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.9705701	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.096	83	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.43438635	NA	NA	AAT	frameshift	T	5	TTTTT	1
09-2_par	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	78	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.72397725	1	0.9982243	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
09-2_par	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.215	68	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.97284443	1	0.9999998	GAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Strelka2;Vardict	2	0.1719	64	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.777823058	NA	NA	GTT	frameshift	T	5	TTTTT	-1
09-2_par	chr2	43589396	12A2p6	cell line	sgMsh2	43589396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	40	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon4:c.T301C:p.Y101H,Kynu:NM_001289594:exon4:c.T301C:p.Y101H,Kynu:NM_027552:exon4:c.T301C:p.Y101H"	2qB	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.68325353	1	0.9097178	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	52216897	12A2p6	cell line	sgMsh2	52216897	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	78	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon86:c.T13233C:p.A4411A	2qC1.1	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.99834	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	192	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.9943295	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	93	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.520358648	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
09-2_par	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	141	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9999975	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Vardict	2	0.043	142	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.194568886	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
09-2_par	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Strelka2;Vardict	2	0.069	87	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.312215189	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr2	67525860	12A2p6	cell line	sgMsh2	67525860	A	-	Deletion	Strelka2;Vardict	2	0.0366	82	0	0	NA	exonic	Xirp2	frameshift deletion	Xirp2:NM_001024618:exon9:c.10964delA:p.N3656Tfs*7	2qC1.3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.165609796	NA	NA	GAA	frameshift	NA	NA	NA	-1
09-2_par	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	164	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.633480094	1	0.9920348	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	69951508	12A2p6	cell line	sgMsh2	69951508	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	202	0	0	NA	exonic	Ubr3	nonsynonymous SNV	"Ubr3:NM_001303033:exon13:c.A1941T:p.K647N,Ubr3:NM_177783:exon13:c.A1941T:p.K647N"	2qC2	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999767	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	92	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.8687727	1	0.9999997	AGC	synonymous	NA	NA	NA	NA
09-2_par	chr2	76732118	12A2p6	cell line	sgMsh2	76732118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	159	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon160:c.61401delA:p.K20467Nfs*38,Ttn:NM_011652:exon281:c.81144delA:p.K27048Nfs*38,Ttn:NM_001385708:exon318:c.86976delA:p.K28992Nfs*38"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.298640616	NA	NA	GTT	frameshift	T	5	TTTTT	-1
09-2_par	chr2	76830446	12A2p6	cell line	sgMsh2	76830446	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.021	503	0	0	NA	exonic	Ttn	synonymous SNV	Ttn:NM_001385708:exon180:c.A36705T:p.T12235T	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.095022014	3	1	TTG	synonymous	GTCTT	10	GTCTTGTCTT	NA
09-2_par	chr2	76888910	12A2p6	cell line	sgMsh2	76888910	A	G	SNV	Mutect2;Vardict	2	0.047	85	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon75:c.T19042C:p.C6348R,Ttn:NM_001385708:exon77:c.T22099C:p.C7367R"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7789631	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	76908977	12A2p6	cell line	sgMsh2	76908977	A	G	SNV	Mutect2;Vardict	2	0.047	85	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon45:c.T11217C:p.V3739V,Ttn:NM_001385708:exon47:c.T11730C:p.V3910V"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7789631	CAA	synonymous	NA	NA	NA	NA
09-2_par	chr2	76943106	12A2p6	cell line	sgMsh2	76943106	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	158	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon30:c.T6951C:p.A2317A,Ttn:NM_001385708:exon31:c.T7089C:p.A2363A,Ttn:NM_011652:exon31:c.T7089C:p.A2363A"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.6774028	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	1	1	3.38E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	115	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.94	4.253366344	NA	1	0.923070994	1	1.18E-09	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	92	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.610855805	1	0.8192261	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	197	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.493209502	2	0.9999557	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	83915312	12A2p6	cell line	sgMsh2	83915312	T	A	SNV	Mutect2;Vardict	2	0.018	325	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1781T:p.N594I	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.081447441	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85414181	12A2p6	cell line	sgMsh2	85414181	C	T	SNV	Mutect2;Vardict	2	0.031	343	0	0	NA	exonic	Olfr993	nonsynonymous SNV	Olfr993:NM_146435:exon1:c.G697A:p.G233R	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.140270592	3	1.26E-08	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85608517	12A2p6	cell line	sgMsh2	85608517	A	G	SNV	Mutect2;Vardict	2	0.015	394	0	0	NA	exonic	Olfr1000	nonsynonymous SNV	Olfr1000:NM_001011695:exon1:c.T392C:p.L131P	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.067872867	3	1	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85776665	12A2p6	cell line	sgMsh2	85776665	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	210	0	0	NA	exonic	Olfr1014	nonsynonymous SNV	Olfr1014:NM_146569:exon1:c.T80C:p.L27P	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999942	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85786414	12A2p6	cell line	sgMsh2	85786414	T	C	SNV	Mutect2;Vardict	2	0.023	261	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T902C:p.F301S	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.10407173	3	9.33E-09	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85840993	12A2p6	cell line	sgMsh2	85840993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	174	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A797G:p.Y266C	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.321264905	2	0.9987511	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	85923779	12A2p6	cell line	sgMsh2	85923779	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.025	327	0	0	NA	exonic	Olfr1026	synonymous SNV	Olfr1026:NM_146584:exon1:c.A510T:p.G170G	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.113121445	3	1.32E-09	GAC	synonymous	NA	NA	NA	NA
09-2_par	chr2	86159683	12A2p6	cell line	sgMsh2	86159683	T	A	SNV	Mutect2;Vardict	2	0.023	370	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A686T:p.H229L	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.10407173	3	1.00E-09	ATG	nonsynonymous	GAAT	8	GAATGAAT	NA
09-2_par	chr2	86159690	12A2p6	cell line	sgMsh2	86159690	T	C	SNV	Mutect2;Vardict	2	0.023	367	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A679G:p.R227G	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.10407173	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	86159924	12A2p6	cell line	sgMsh2	86159924	A	G	SNV	Mutect2;Vardict	2	0.018	350	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.T445C:p.Y149H	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.081447441	3	1.00E-09	TAT	nonsynonymous	ATGT	8	ATGTATGT	NA
09-2_par	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.052	344	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.235292606	3	0.8684467	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	86171674	12A2p6	cell line	sgMsh2	86171674	C	A	SNV	Mutect2;Vardict	2	0.024	216	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G142T:p.V48F	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.108596587	3	0.9999997	ACT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	321	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.515833791	2	0.9999948	AAA	synonymous	NA	NA	NA	NA
09-2_par	chr2	86923315	12A2p6	cell line	sgMsh2	86923315	A	C	SNV	Mutect2;Vardict	2	0.027	309	0	0	NA	exonic	Olfr1098	nonsynonymous SNV	Olfr1098:NM_146845:exon1:c.T216G:p.S72R	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.122171161	3	5.34E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87092462	12A2p6	cell line	sgMsh2	87092462	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	186	0	0	NA	exonic	Olfr1109	nonsynonymous SNV	Olfr1109:NM_146766:exon1:c.T934G:p.S312A	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.176469455	3	0.9983704	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87107793	12A2p6	cell line	sgMsh2	87107793	A	G	SNV	Mutect2;Vardict	2	0.021	346	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T593C:p.L198P	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.095022014	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Vardict	2	0.024	213	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.108596587	3	0.9999996	AAA	nonsynonymous	A	6	AAAAAA	NA
09-2_par	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	164	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.484159786	2	0.9998986	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr2	87191984	12A2p6	cell line	sgMsh2	87191984	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	244	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T296C:p.I99T	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.113121445	3	0.9999999	ATT	nonsynonymous	TTTC	8	TTTCTTTC	NA
09-2_par	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	261	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.9985233	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.115	349	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.520358648	NA	NA	CAT	frameshift	NA	NA	NA	1
09-2_par	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	286	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.316740047	2	0.9999623	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	293	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.212668317	3	0.9926643	TAC	synonymous	TACT	8	TACTTACT	NA
09-2_par	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	359	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.285066042	2	0.9990966	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	332	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.687778387	1	2.87E-09	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87833305	12A2p6	cell line	sgMsh2	87833305	T	C	SNV	Mutect2;Vardict	2	0.026	273	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T265C:p.F89L	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.117646303	3	2.36E-08	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	274	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.592756373	1	0.8425968	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88025316	12A2p6	cell line	sgMsh2	88025316	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	208	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T593C:p.I198T	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.158370023	3	0.9998881	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	385	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.669678956	1	5.08E-09	ACA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88224332	12A2p6	cell line	sgMsh2	88224332	T	G	SNV	Mutect2;Vardict	2	0.016	368	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.A699C:p.K233N	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.072397725	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	334	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.606330947	1	0.9904611	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	182	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.479634928	2	0.9999769	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
09-2_par	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.147	186	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.665154098	1	0.9998561	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88592520	12A2p6	cell line	sgMsh2	88592520	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	207	0	0	NA	exonic	Olfr1189	nonsynonymous SNV	Olfr1189:NM_146772:exon1:c.A715G:p.S239G	2qD	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.217193175	3	0.9492225	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;MuSe;Vardict	3	0.076	306	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.343889194	2	0.9999997	CTA	synonymous	ACT	8	ACTACTAC	NA
09-2_par	chr2	88959110	12A2p6	cell line	sgMsh2	88959110	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.021	443	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.A643G:p.I215V	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.095022014	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.022	371	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.099546872	3	1.00E-09	TAA	synonymous	NA	NA	NA	NA
09-2_par	chr2	88987545	12A2p6	cell line	sgMsh2	88987545	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.022	334	0	0	NA	exonic	Olfr1214	nonsynonymous SNV	Olfr1214:NM_146897:exon1:c.T656C:p.V219A	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.099546872	3	1.02E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	89125321	12A2p6	cell line	sgMsh2	89125321	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.016	499	0	0	NA	exonic	Olfr1222	nonsynonymous SNV	Olfr1222:NM_001011860:exon1:c.A409T:p.R137W	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.072397725	3	1	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	164	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	2	1	1	1	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.841623553	1	1.07E-09	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	91720422	12A2p6	cell line	sgMsh2	91720422	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	255	0	0	NA	exonic	Harbi1	nonsynonymous SNV	"Harbi1:NM_001356518:exon3:c.T739C:p.Y247H,Harbi1:NM_178724:exon3:c.T739C:p.Y247H"	2qE1	chr2-82235500-94430128	6	4	2	0.94	4.253366344	NA	1	0.131220877	3	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	262	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.891396989	1	1	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	110362443	12A2p6	cell line	sgMsh2	110362443	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	109	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A353G:p.Y118C	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.09204778	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	111227956	12A2p6	cell line	sgMsh2	111227956	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	171	0	0	NA	exonic	A26c3	nonsynonymous SNV	"A26c3:NM_001378593:exon3:c.T491C:p.L164S,A26c3:NM_026248:exon3:c.T491C:p.L164S"	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9981128	CAA	nonsynonymous	AAGC	9	AAGCAAGCA	NA
09-2_par	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.144	485	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.651579525	1	5.11E-09	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	455	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.9998524	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Vardict	2	0.03	276	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999998	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
09-2_par	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	113	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.904971562	1	1.85E-09	AAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	111665115	12A2p6	cell line	sgMsh2	111665115	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	172	0	0	NA	exonic	Olfr1299	synonymous SNV	Olfr1299:NM_146884:exon2:c.T888C:p.N296N	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.8206582	ATG	synonymous	A	6	AAAAAA	NA
09-2_par	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	245	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	75	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	2	1	1	1.72E-08	AAC	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	89	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.461535497	2	0.9978109	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.2017	119	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.912663821	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
09-2_par	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	46	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.701352961	1	0.9583054	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	39	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.796374975	1	0.9916597	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.846148411	1	0.9999998	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
09-2_par	chr2	119921746	12A2p6	cell line	sgMsh2	119921746	T	-	Deletion	Mutect2;Vardict	2	0.032	129	0	0	NA	exonic	Mga	frameshift deletion	"Mga:NM_001164274:exon7:c.2320delT:p.P775Lfs*38,Mga:NM_013720:exon7:c.2320delT:p.P775Lfs*38"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.14479545	NA	NA	GTT	frameshift	NA	NA	NA	-1
09-2_par	chr2	119921751	12A2p6	cell line	sgMsh2	119921751	T	C	SNV	Mutect2;Strelka2	2	0.031	134	0	0	NA	exonic	Mga	synonymous SNV	"Mga:NM_001164274:exon7:c.T2325C:p.P775P,Mga:NM_013720:exon7:c.T2325C:p.P775P"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9990879	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr2	120030127	12A2p6	cell line	sgMsh2	120030127	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	186	0	0	NA	exonic	Jmjd7	stopgain	Jmjd7:NM_001114637:exon2:c.G134A:p.W45X	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	0.9999899	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	74	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.493209502	NA	NA	TAA	frameshift	A	5	AAAAA	-1
09-2_par	chr2	120430999	12A2p6	cell line	sgMsh2	120430999	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	81	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon10:c.A959C:p.D320A	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9871291	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	68	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.891396989	1	0.9999941	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	120986661	12A2p6	cell line	sgMsh2	120986661	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	111	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon6:c.A697G:p.T233A	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.411762061	2	0.9998975	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	59	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.701352961	1	0.9824175	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	121301526	12A2p6	cell line	sgMsh2	121301526	T	A	SNV	Mutect2;Vardict	2	0.07	55	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon4:c.T2108A:p.L703Q,Map1a:NM_032393:exon5:c.T2822A:p.L941Q"	2qE5	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.8950822	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	82	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.610855805	1	0.7934665	TCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	125757452	12A2p6	cell line	sgMsh2	125757452	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	155	0	0	NA	exonic	Secisbp2l	nonsynonymous SNV	"Secisbp2l:NM_001369056:exon5:c.A427G:p.M143V,Secisbp2l:NM_177608:exon10:c.A1396G:p.M466V"	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.9448057	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	121	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	TTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	62	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.986419003	1	0.9999994	TTA	synonymous	NA	NA	NA	NA
09-2_par	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	102	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.53845808	2	0.9276921	GTA	synonymous	NA	NA	NA	NA
09-2_par	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.179	99	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.809949548	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	130565017	12A2p6	cell line	sgMsh2	130565017	A	G	SNV	Mutect2;Vardict	2	0.068	58	0	0	NA	exonic	Mrps26	nonsynonymous SNV	Mrps26:NM_207207:exon4:c.A563G:p.N188S	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.307690331	2	9.64E-05	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	130614335	12A2p6	cell line	sgMsh2	130614335	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	117	0	0	NA	exonic	Fastkd5	synonymous SNV	"Fastkd5:NM_001377124:exon2:c.A2199G:p.L733L,Fastkd5:NM_001377125:exon2:c.A2199G:p.L733L,Fastkd5:NM_001146084:exon3:c.A2199G:p.L733L,Fastkd5:NM_198176:exon3:c.A2199G:p.L733L"	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9897512	GTA	synonymous	NA	NA	NA	NA
09-2_par	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	111	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.457010639	2	0.9996417	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	131076152	12A2p6	cell line	sgMsh2	131076152	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	94	0	0	NA	exonic	Siglec1	nonsynonymous SNV	Siglec1:NM_011426:exon11:c.A2911G:p.I971V	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9459101	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	50	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999936	ACA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	67	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.895921847	1	0.9999941	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Vardict	2	0.051	98	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.6446079	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	134988178	12A2p6	cell line	sgMsh2	134988178	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	75	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon3:c.G232A:p.A78T,Plcb1:NM_019677:exon3:c.G232A:p.A78T"	2qF3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.33031462	2	0.9662188	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	136756134	12A2p6	cell line	sgMsh2	136756134	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.113	45	0	0	NA	exonic	Snap25	nonsynonymous SNV	"Snap25:NM_001291056:exon2:c.C5A:p.A2D,Snap25:NM_001355254:exon2:c.C5A:p.A2D,Snap25:NM_001355255:exon2:c.C5A:p.A2D,Snap25:NM_011428:exon2:c.C5A:p.A2D"	2qF3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.511308933	2	0.860256	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	147029768	12A2p6	cell line	sgMsh2	147029768	T	C	SNV	Mutect2;Vardict	2	0.036	168	0	0	NA	exonic	Xrn2	nonsynonymous SNV	"Xrn2:NM_001356402:exon11:c.T611C:p.V204A,Xrn2:NM_001356403:exon12:c.T416C:p.V139A,Xrn2:NM_011917:exon12:c.T1109C:p.V370A"	2qG2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.162894881	3	0.9990146	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	23	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	0.9959131	CGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	152441250	12A2p6	cell line	sgMsh2	152441250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	144	0	0	NA	exonic	6820408C15Rik	nonsynonymous SNV	"6820408C15Rik:NM_001379452:exon6:c.T626C:p.L209P,6820408C15Rik:NM_001289738:exon10:c.T836C:p.L279P,6820408C15Rik:NM_177656:exon10:c.T833C:p.L278P"	2qG3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	0.9999463	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
09-2_par	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	121	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	7.08E-09	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr2	153401260	12A2p6	cell line	sgMsh2	153401260	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	85	0	0	NA	exonic	Asxl1	synonymous SNV	Asxl1:NM_001039939:exon12:c.T3732C:p.C1244C	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.280541184	2	0.8378525	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	88	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.524883506	2	0.9471781	GCT	synonymous	NA	NA	NA	NA
09-2_par	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	62	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9828833	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
09-2_par	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	103	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.53845808	2	0.929347	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	156264345	12A2p6	cell line	sgMsh2	156264345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	101	0	0	NA	exonic	Phf20	synonymous SNV	Phf20:NM_172674:exon5:c.T405G:p.A135A	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.515833791	2	0.9788575	CTT	synonymous	T	5	TTTTT	NA
09-2_par	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	217	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.696828103	1	0.9999994	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	74	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.701352961	1	0.9936193	GCG	synonymous	NA	NA	NA	NA
09-2_par	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	37	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.832573837	1	0.9950315	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	140	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.864247842	1	1.15E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
09-2_par	chr2	164889390	12A2p6	cell line	sgMsh2	164889390	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	310	0	0	NA	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon12:c.T1394C:p.L465P,Pcif1:NM_001374127:exon13:c.T1343C:p.L448P,Pcif1:NM_001374128:exon13:c.T1343C:p.L448P,Pcif1:NM_146129:exon13:c.T1343C:p.L448P"	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.108596587	3	1.49E-09	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	145	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.823524122	1	2.98E-09	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	12	0	0	NA	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	0.9455788	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.164	77	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.999132	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	68	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	33	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.68325353	1	0.8703401	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	173	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.895921847	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr2	180195915	12A2p6	cell line	sgMsh2	180195915	A	G	SNV	Mutect2;Vardict	2	0.045	92	0	0	NA	exonic	Lama5	synonymous SNV	Lama5:NM_001081171:exon23:c.T2859C:p.V953V	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.8582947	GAA	synonymous	NA	NA	NA	NA
09-2_par	chr2	181238140	12A2p6	cell line	sgMsh2	181238140	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	113	0	0	NA	exonic	Helz2	synonymous SNV	Helz2:NM_183162:exon5:c.A1782G:p.K594K	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5761144	ATT	synonymous	NA	NA	NA	NA
09-2_par	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	67	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.778275544	1	0.9994585	ATC	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.94	4.253366344	NA	1	0.837098695	1	5.95E-09	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	5243737	12A2p6	cell line	sgMsh2	5243737	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	124	0	0	NA	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon2:c.T2022C:p.Y674Y,Zfhx4:NM_030708:exon2:c.T2022C:p.Y674Y"	3qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
09-2_par	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	119	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	14537323	12A2p6	cell line	sgMsh2	14537323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	79	0	0	NA	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon4:c.A475G:p.T159A,Lrrcc1:NM_001163580:exon4:c.A475G:p.T159A,Lrrcc1:NM_028915:exon4:c.A475G:p.T159A"	3qA1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.592756373	1	0.6172124	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	72	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	3.41E-08	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.093	83	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.420811777	2	0.9989613	ACA	synonymous	NA	NA	NA	NA
09-2_par	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	151	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	1	TGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	31111705	12A2p6	cell line	sgMsh2	31111705	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	108	0	0	NA	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon3:c.T1170A:p.H390Q,Skil:NM_011386:exon3:c.T1170A:p.H390Q,Skil:NM_001271772:exon5:c.T930A:p.H310Q"	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.190044028	3	0.947454	ATT	nonsynonymous	CATT	8	CATTCATT	NA
09-2_par	chr3	31111712	12A2p6	cell line	sgMsh2	31111712	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	101	0	0	NA	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon3:c.T1177G:p.L393V,Skil:NM_011386:exon3:c.T1177G:p.L393V,Skil:NM_001271772:exon5:c.T937G:p.L313V"	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.09709782	TTT	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	56	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.402712345	2	0.009898514	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	147	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	1.10E-09	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	65	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.334839478	2	9.59E-05	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	54317552	12A2p6	cell line	sgMsh2	54317552	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	86	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon11:c.A2321G:p.D774G,Trpc4:NM_016984:exon11:c.A2321G:p.D774G"	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.7449234	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	97	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.778275544	1	0.9999814	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	122	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.9996976	CCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	37	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.954744998	1	0.9996248	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
09-2_par	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	118	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.669678956	1	0.9973078	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	116	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	2	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	48	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	57	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999988	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Strelka2;Vardict	2	0.0909	88	0	0	NA	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.411309575	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
09-2_par	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	125	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	72909040	12A2p6	cell line	sgMsh2	72909040	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	55	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon40:c.A4592G:p.H1531R	3qE3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9873444	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	109	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.846148411	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	82903682	12A2p6	cell line	sgMsh2	82903682	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	84	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.C31A:p.L11I	3qE3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.380088056	2	0.9970163	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
09-2_par	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	148	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.665154098	1	0.9991221	ACT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	84594306	12A2p6	cell line	sgMsh2	84594306	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.051	155	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.529delA:p.N178Mfs*4	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.230767748	NA	NA	TAA	frameshift	A	5	AAAAA	-1
09-2_par	chr3	86998849	12A2p6	cell line	sgMsh2	86998849	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	175	0	0	NA	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379503:exon1:c.A22G:p.S8G,Cd1d1:NM_001379501:exon2:c.A118G:p.S40G,Cd1d1:NM_001379502:exon2:c.A118G:p.S40G,Cd1d1:NM_007639:exon2:c.A118G:p.S40G"	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.9447003	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	89188430	12A2p6	cell line	sgMsh2	89188430	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	47	0	0	NA	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon10:c.G818T:p.R273M,Fam189b:NM_001014995:exon11:c.G1790T:p.R597M,Fam189b:NM_001355760:exon11:c.G1472T:p.R491M"	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.479634928	2	0.9377606	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	89645464	12A2p6	cell line	sgMsh2	89645464	A	G	SNV	Mutect2;Vardict	2	0.051	104	0	0	NA	exonic	Kcnn3	nonsynonymous SNV	Kcnn3:NM_080466:exon4:c.A1474G:p.T492A	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.6561144	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.787325259	1	0.9959968	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	93396984	12A2p6	cell line	sgMsh2	93396984	A	G	SNV	Mutect2;Vardict	2	0.026	453	0	0	NA	exonic	Rptn	synonymous SNV	Rptn:NM_009100:exon3:c.A1623G:p.Q541Q	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.117646303	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr3	93447760	12A2p6	cell line	sgMsh2	93447760	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	89	0	0	NA	exonic	Tchh	synonymous SNV	Tchh:NM_001163098:exon2:c.A4506G:p.E1502E	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6208913	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.941170425	1	4.89E-08	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	133	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.9923165	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	130	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6488797	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	95763832	12A2p6	cell line	sgMsh2	95763832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	38	0	0	NA	exonic	Rprd2	nonsynonymous SNV	"Rprd2:NM_001368179:exon10:c.A4126G:p.M1376V,Rprd2:NM_001081293:exon11:c.A4258G:p.M1420V,Rprd2:NM_001368178:exon11:c.A4204G:p.M1402V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.864247842	1	0.997833	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	83	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	3.38E-09	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	101017101	12A2p6	cell line	sgMsh2	101017101	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	147	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon4:c.T1021C:p.Y341H	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.194568886	3	0.9755255	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	2.71E-08	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	193	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.14479545	3	0.9999413	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	103928888	12A2p6	cell line	sgMsh2	103928888	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	106	0	0	NA	exonic	Rsbn1	nonsynonymous SNV	"Rsbn1:NM_001356556:exon2:c.T1241C:p.I414T,Rsbn1:NM_001356557:exon2:c.T1235C:p.I412T,Rsbn1:NM_001356558:exon2:c.T1241C:p.I414T,Rsbn1:NM_172684:exon2:c.T1241C:p.I414T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.9505479	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	115	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	163	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.167419739	3	0.9982346	CTG	nonsynonymous	C	5	CCCCC	NA
09-2_par	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	96	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.900446705	1	2.62E-08	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Vardict	2	0.05	79	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.6490753	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	68	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	108883420	12A2p6	cell line	sgMsh2	108883420	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	152	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon3:c.A289G:p.S97G,Fndc7:NM_177091:exon3:c.A289G:p.S97G"	3qF3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	0.9990251	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	44	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.429861492	2	0.9657207	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	121461331	12A2p6	cell line	sgMsh2	121461331	A	G	SNV	Mutect2;Vardict	2	0.069	74	0	0	NA	exonic	Slc44a3	nonsynonymous SNV	Slc44a3:NM_145394:exon14:c.T1637C:p.V546A	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.9333023	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	93	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.420811777	2	0.9995751	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	125	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.737551823	1	0.9999852	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	124413820	12A2p6	cell line	sgMsh2	124413820	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	96	0	0	NA	exonic	1700006A11Rik	frameshift deletion	"1700006A11Rik:NM_001357195:exon6:c.505delT:p.S169Pfs*2,1700006A11Rik:NM_027939:exon7:c.721delT:p.S241Pfs*2"	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.33031462	NA	NA	GAA	frameshift	NA	NA	NA	-1
09-2_par	chr3	125438267	12A2p6	cell line	sgMsh2	125438267	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	125	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A484C:p.I162L	3qG1	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.8424628	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	97	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.398187487	2	0.9994541	CGA	synonymous	NA	NA	NA	NA
09-2_par	chr3	127540572	12A2p6	cell line	sgMsh2	127540572	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	190	0	0	NA	exonic	Larp7	synonymous SNV	Larp7:NM_138593:exon12:c.T1605C:p.P535P	3qG2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9978245	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	103	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.502259217	2	0.991087	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	82	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9994509	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	132885813	12A2p6	cell line	sgMsh2	132885813	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	88	0	0	NA	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1545A:p.N515K,Npnt:NM_001287103:exon11:c.T1233A:p.N411K,Npnt:NM_001287102:exon12:c.T1638A:p.N546K,Npnt:NM_033525:exon12:c.T1596A:p.N532K,Npnt:NM_001287101:exon13:c.T1689A:p.N563K"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7878893	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	133330489	12A2p6	cell line	sgMsh2	133330489	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	79	0	0	NA	exonic	Ppa2	nonsynonymous SNV	"Ppa2:NM_001293641:exon5:c.T403C:p.W135R,Ppa2:NM_146141:exon5:c.T403C:p.W135R"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.8701549	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	122	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.76470097	1	0.9999971	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	202	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999767	AAA	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr3	138478888	12A2p6	cell line	sgMsh2	138478888	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	121	0	0	NA	exonic	Metap1	nonsynonymous SNV	Metap1:NM_175224:exon4:c.T322C:p.Y108H	3qG3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.334839478	2	0.9961077	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	144754801	12A2p6	cell line	sgMsh2	144754801	A	T	SNV	Mutect2;MuSe;Vardict	3	0.061	231	0	0	NA	exonic	Clca3a1	synonymous SNV	Clca3a1:NM_009899:exon6:c.T891A:p.P297P	3qH2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.9718186	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Vardict	2	0.03	203	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999861	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	108	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.638004952	1	0.9693549	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr3	145988293	12A2p6	cell line	sgMsh2	145988293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	11	0	0	NA	exonic	Syde2	nonsynonymous SNV	Syde2:NM_001166064:exon1:c.T295C:p.Y99H	3qH2	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	2	1	1	0.9316218	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
09-2_par	chr3	153509458	12A2p6	cell line	sgMsh2	153509458	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	48	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon2:c.A58G:p.I20V	3qH3	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.565607227	2	0.6126754	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	64	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr3	157146312	12A2p6	cell line	sgMsh2	157146312	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	87	0	0	NA	exonic	Negr1	synonymous SNV	"Negr1:NM_001039094:exon5:c.G750A:p.E250E,Negr1:NM_177274:exon5:c.G750A:p.E250E"	3qH4	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8141984	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr3	158156875	12A2p6	cell line	sgMsh2	158156875	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	89	0	0	NA	exonic	Lrrc7	synonymous SNV	"Lrrc7:NM_001370781:exon22:c.T4023C:p.G1341G,Lrrc7:NM_001081358:exon23:c.T3924C:p.G1308G"	3qH4	chr3-10012637-159913826	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.8500414	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr4	3834571	12A2p6	cell line	sgMsh2	3834571	A	G	SNV	Mutect2;Vardict	2	0.056	170	0	0	NA	exonic	Rps20	nonsynonymous SNV	Rps20:NM_026147:exon4:c.T290C:p.I97T	4qA1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.253392037	2	0.6752348	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	11606099	12A2p6	cell line	sgMsh2	11606099	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	81	0	0	NA	exonic	Rad54b	synonymous SNV	Rad54b:NM_001039556:exon10:c.A1506G:p.G502G	4qA1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.280541184	2	0.8286266	GAC	synonymous	NA	NA	NA	NA
09-2_par	chr4	14548485	12A2p6	cell line	sgMsh2	14548485	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	103	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon7:c.C803T:p.A268V	4qA1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.357463767	2	0.9973377	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	100	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	2	1	1	1.04E-09	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	102	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	1	1	1.03E-09	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	70	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	76	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	1	1	1.37E-08	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr4	32725960	12A2p6	cell line	sgMsh2	32725960	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	78	0	0	NA	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon51:c.7878delA:p.N2627Tfs*25	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.479634928	NA	NA	CAA	frameshift	NA	NA	NA	-1
09-2_par	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	98	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.832573837	1	0.9999992	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	98	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.800899833	1	0.9999953	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	41045345	12A2p6	cell line	sgMsh2	41045345	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	125	0	0	NA	exonic	Aqp7	nonsynonymous SNV	"Aqp7:NM_001378639:exon2:c.T34C:p.S12P,Aqp7:NM_001378638:exon3:c.T34C:p.S12P,Aqp7:NM_007473:exon3:c.T34C:p.S12P"	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.221718033	3	0.800937	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	41625350	12A2p6	cell line	sgMsh2	41625350	A	G	SNV	Mutect2;Vardict	2	0.112	48	0	0	NA	exonic	Dnaic1	nonsynonymous SNV	Dnaic1:NM_175138:exon13:c.A1313G:p.Q438R	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.506784075	2	0.8873281	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	43650711	12A2p6	cell line	sgMsh2	43650711	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	145	0	0	NA	exonic	Npr2	nonsynonymous SNV	"Npr2:NM_001355466:exon20:c.T2915C:p.L972P,Npr2:NM_173788:exon21:c.T2990C:p.L997P"	4qA5	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.167419739	3	0.9963604	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Vardict	2	0.053	140	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.239817464	NA	NA	CTT	frameshift	T	5	TTTTT	-1
09-2_par	chr4	46875779	12A2p6	cell line	sgMsh2	46875779	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	68	0	0	NA	exonic	Gabbr2	frameshift deletion	Gabbr2:NM_001081141:exon2:c.342delA:p.A115Pfs*5	4qB1	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.416286919	NA	NA	CTT	frameshift	NA	NA	NA	-1
09-2_par	chr4	52971346	12A2p6	cell line	sgMsh2	52971346	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	142	0	0	NA	exonic	Olfr270	nonsynonymous SNV	Olfr270:NM_146607:exon1:c.T718A:p.S240T	4qB2	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.162894881	3	0.997025	TTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	80	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	1	1	5.88E-09	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	59213925	12A2p6	cell line	sgMsh2	59213925	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	64	0	0	NA	exonic	Ugcg	nonsynonymous SNV	Ugcg:NM_011673:exon5:c.A506G:p.H169R	4qB3	chr4-3172993-59912905	3	2	1	0.94	4.253366344	NA	1	0.466060355	2	0.9853559	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	61832604	12A2p6	cell line	sgMsh2	61832604	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.017	915	0	0	NA	exonic	Mup5	synonymous SNV	Mup5:NM_008649:exon5:c.A465T:p.L155L	4qB3	chr4-59913506-62151012	5	3	2	0.94	4.253366344	NA	1	0.076922583	3	1	ATA	synonymous	NA	NA	NA	NA
09-2_par	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	40	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.995468719	1	0.9999222	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	116	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.855198127	1	1.43E-08	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	61	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.665154098	1	0.9476238	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr4	86585367	12A2p6	cell line	sgMsh2	86585367	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	45	0	0	NA	exonic	Haus6	nonsynonymous SNV	Haus6:NM_173400:exon15:c.T1720A:p.L574I	4qC4	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.411762061	2	0.9693442	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	88836087	12A2p6	cell line	sgMsh2	88836087	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	387	0	0	NA	exonic	Ifna5	nonsynonymous SNV	Ifna5:NM_010505:exon1:c.A563G:p.E188G	4qC4	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.10407173	3	1.00E-09	GAG	nonsynonymous	AGG	8	AGGAGGAG	NA
09-2_par	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Vardict	2	0.126	30	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.570132084	2	0.5510418	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	64	0	0	NA	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.352938909	2	0.9738139	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Vardict	2	0.048	129	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.217193175	3	0.8503969	CGA	synonymous	NA	NA	NA	NA
09-2_par	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	129	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.710402677	1	0.9999232	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
09-2_par	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	58	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.39366263	2	0.9870914	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr4	108245023	12A2p6	cell line	sgMsh2	108245023	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	97	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon9:c.A1500C:p.I500I	4qC7	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.33031462	2	0.9862118	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	76	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.47511007	2	0.9904924	TAG	synonymous	GTA	8	GTAGTAGT	NA
09-2_par	chr4	109056318	12A2p6	cell line	sgMsh2	109056318	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	163	0	0	NA	exonic	Nrd1	nonsynonymous SNV	"Nrd1:NM_001346554:exon21:c.T2534C:p.V845A,Nrd1:NM_146150:exon23:c.T2666C:p.V889A,Nrd1:NM_001347169:exon25:c.T2870C:p.V957A"	4qC7	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.176469455	3	0.9962996	GTT	nonsynonymous	TGT	8	TGTTGTTG	NA
09-2_par	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	85	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.791850117	1	0.999963	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	104	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.941170425	1	1.52E-09	GCT	synonymous	NA	NA	NA	NA
09-2_par	chr4	113238336	12A2p6	cell line	sgMsh2	113238336	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	162	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon3:c.G125A:p.G42D	4qD1	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.235292606	3	0.6827621	ACC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	115014223	12A2p6	cell line	sgMsh2	115014223	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	93	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon8:c.A311G:p.N104S,Stil:NM_001304555:exon9:c.A989G:p.N330S,Stil:NM_001304559:exon9:c.A989G:p.N330S,Stil:NM_009185:exon9:c.A989G:p.N330S"	4qD1	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.352938909	2	0.9942971	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.1944	72	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-62192015-115924094	3	2	1	0.94	4.253366344	NA	1	0.879632359	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
09-2_par	chr4	116602755	12A2p6	cell line	sgMsh2	116602755	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	89	0	0	NA	exonic	Nasp	nonsynonymous SNV	"Nasp:NM_001284229:exon11:c.A1030G:p.T344A,Nasp:NM_001081475:exon12:c.A1111G:p.T371A,Nasp:NM_016777:exon14:c.A2086G:p.T696A"	4qD1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.957981	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	116639015	12A2p6	cell line	sgMsh2	116639015	A	G	SNV	Mutect2;Vardict	2	0.053	80	0	0	NA	exonic	Akr1a1	nonsynonymous SNV	Akr1a1:NM_021473:exon6:c.T698C:p.V233A	4qD1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	7.52E-08	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	117110613	12A2p6	cell line	sgMsh2	117110613	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	47	0	0	NA	exonic	Ptch2	nonsynonymous SNV	"Ptch2:NM_001312903:exon16:c.T1420G:p.F474V,Ptch2:NM_008958:exon16:c.T2386G:p.F796V"	4qD1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.461535497	2	0.9580369	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	84	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.927595852	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	99	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.968319572	1	1.31E-09	CAG	synonymous	GT	8	GTGTGTGT	NA
09-2_par	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	70	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	85	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	1	1	2.48E-09	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999997	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr4	126077393	12A2p6	cell line	sgMsh2	126077393	T	C	SNV	Mutect2;Vardict	2	0.085	48	0	0	NA	exonic	Oscp1	nonsynonymous SNV	"Oscp1:NM_172701:exon4:c.T493C:p.F165L,Oscp1:NM_001356446:exon5:c.T523C:p.F175L"	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9677187	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	119	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.990943861	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	70	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.918546136	1	0.9999986	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr4	129518061	12A2p6	cell line	sgMsh2	129518061	G	A	SNV	Mutect2;Vardict	2	0.027	235	0	0	NA	exonic	Hdac1	nonsynonymous SNV	Hdac1:NM_008228:exon10:c.C1040T:p.P347L	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.113	91	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.511308933	NA	NA	GTT	frameshift	T	5	TTTTT	-1
09-2_par	chr4	132311973	12A2p6	cell line	sgMsh2	132311973	T	C	SNV	Mutect2;Vardict	2	0.081	50	0	0	NA	exonic	Trnau1ap	nonsynonymous SNV	Trnau1ap:NM_027925:exon9:c.A761G:p.N254S	4qD2.3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.9597936	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	111	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.461535497	2	0.9995261	TTC	synonymous	NA	NA	NA	NA
09-2_par	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	21	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	2	1	1	0.9934197	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	87	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.818999264	1	0.9999925	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Vardict	2	0.088	44	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.398187487	2	0.9634385	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr4	135917339	12A2p6	cell line	sgMsh2	135917339	T	G	SNV	Mutect2;Vardict	2	0.069	57	0	0	NA	exonic	Cnr2	nonsynonymous SNV	"Cnr2:NM_001305278:exon2:c.T727G:p.L243V,Cnr2:NM_009924:exon2:c.T727G:p.L243V"	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.8893799	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	138289303	12A2p6	cell line	sgMsh2	138289303	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	85	0	0	NA	exonic	Kif17	synonymous SNV	"Kif17:NM_001190978:exon7:c.T1296C:p.A432A,Kif17:NM_010623:exon9:c.T2007C:p.A669A"	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.343889194	2	0.9872593	CTG	synonymous	TGTGGC	14	TGTGGCTGTGGCTG	NA
09-2_par	chr4	138320887	12A2p6	cell line	sgMsh2	138320887	T	C	SNV	Mutect2;Vardict	2	0.068	60	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.A523G:p.M175V	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.307690331	2	0.8855469	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	72	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.705877819	NA	NA	TCC	frameshift	C	5	CCCCC	-1
09-2_par	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	49	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.9597188	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	140034462	12A2p6	cell line	sgMsh2	140034462	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	50	0	0	NA	exonic	Igsf21	nonsynonymous SNV	Igsf21:NM_198610:exon6:c.C904T:p.R302W	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.366513483	2	0.9597936	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	140748198	12A2p6	cell line	sgMsh2	140748198	A	G	SNV	Mutect2;Vardict	2	0.071	58	0	0	NA	exonic	Padi4	nonsynonymous SNV	Padi4:NM_011061:exon15:c.T1655C:p.L552P	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9153138	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	140818319	12A2p6	cell line	sgMsh2	140818319	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	146	0	0	NA	exonic	Padi1	nonsynonymous SNV	Padi1:NM_011059:exon14:c.T1604A:p.L535H	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.9523065	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	140827931	12A2p6	cell line	sgMsh2	140827931	A	C	SNV	Mutect2;Vardict	2	0.067	77	0	0	NA	exonic	Padi1	synonymous SNV	Padi1:NM_011059:exon8:c.T897G:p.T299T	4qD3	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9157343	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	229	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.981894145	1	1	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr4	143795101	12A2p6	cell line	sgMsh2	143795101	A	G	SNV	Mutect2;Vardict	2	0.019	380	0	0	NA	exonic	Pramel25	nonsynonymous SNV	Pramel25:NM_001007077:exon4:c.A1286G:p.Y429C	4qE1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.085972298	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	145170242	12A2p6	cell line	sgMsh2	145170242	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	90	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon9:c.T1107G:p.D369E,Vps13d:NM_001276465:exon10:c.T1107G:p.D369E"	4qE1	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.420811777	2	0.9994444	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	148562393	12A2p6	cell line	sgMsh2	148562393	A	G	SNV	Mutect2;Vardict	2	0.059	74	0	0	NA	exonic	Exosc10	synonymous SNV	"Exosc10:NM_001355489:exon4:c.A210G:p.V70V,Exosc10:NM_001355490:exon4:c.A459G:p.V153V,Exosc10:NM_016699:exon4:c.A459G:p.V153V"	4qE2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.722004	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Vardict	2	0.052	79	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	6.79E-08	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	44	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999731	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	79	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-115967338-156223608	4	2	2	0.94	4.253366344	NA	1	0.963794714	1	3.29E-08	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	118	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.194568886	3	0.9484709	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Vardict	2	0.078	50	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.352938909	2	0.9456943	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	65	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.547507795	2	0.784523	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr5	6771154	12A2p6	cell line	sgMsh2	6771154	A	T	SNV	Mutect2;Vardict	2	0.04	154	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.T1908A:p.N636K	5qA1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.992778	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	14712567	12A2p6	cell line	sgMsh2	14712567	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	93	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.A11053G:p.M3685V,Pclo:NM_011995:exon7:c.A11053G:p.M3685V"	5qA1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9444604	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	157	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9997361	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	20998619	12A2p6	cell line	sgMsh2	20998619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	140	0	0	NA	exonic	Ptpn12	nonsynonymous SNV	"Ptpn12:NM_001356591:exon12:c.A803G:p.H268R,Ptpn12:NM_001356592:exon13:c.A803G:p.H268R,Ptpn12:NM_011203:exon13:c.A1160G:p.H387R,Ptpn12:NM_001356590:exon14:c.A1202G:p.H401R"	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.429861492	2	0.9999929	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	23844024	12A2p6	cell line	sgMsh2	23844024	T	G	SNV	Mutect2;Vardict	2	0.055	157	0	0	NA	exonic	Tomm7	nonsynonymous SNV	Tomm7:NM_025394:exon1:c.A50C:p.K17T	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	0.5832962	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	49	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999919	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Vardict	2	0.079	51	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9535518	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr5	24477100	12A2p6	cell line	sgMsh2	24477100	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	116	0	0	NA	exonic	Agap3	nonsynonymous SNV	"Agap3:NM_001256431:exon5:c.T593C:p.V198A,Agap3:NM_001359881:exon5:c.T593C:p.V198A,Agap3:NM_139153:exon5:c.T593C:p.V198A"	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.361988625	2	0.9990022	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	24718072	12A2p6	cell line	sgMsh2	24718072	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.098	55	0	0	NA	exonic	Wdr86	synonymous SNV	Wdr86:NM_001081441:exon3:c.A621C:p.T207T	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.443436066	2	0.9841171	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	32	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.565607227	2	0.575044	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Vardict	2	0.033	120	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.149320308	3	0.9966561	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Vardict	2	0.1	58	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.452485781	2	0.9847878	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.427	46	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
09-2_par	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	90	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.624430378	1	0.8982174	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	145	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.9643785	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	141	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.488684644	2	0.9994701	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
09-2_par	chr5	34794116	12A2p6	cell line	sgMsh2	34794116	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	91	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon4:c.T420A:p.D140E	5qB2	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.997722	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	119	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.882347273	1	2.31E-09	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	113	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.968319572	1	1.01E-09	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	155	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.33031462	2	0.9987523	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	76	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	1	1	1.37E-08	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	94	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9956257	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Strelka2;Vardict	2	0.3273	55	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
09-2_par	chr5	84331605	12A2p6	cell line	sgMsh2	84331605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	84	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon3:c.C539A:p.A180D	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.479634928	2	0.9927965	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	70	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.995468719	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	87092234	12A2p6	cell line	sgMsh2	87092234	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	149	0	0	NA	exonic	Ugt2b36	stopgain	Ugt2b36:NM_001029867:exon1:c.G291A:p.W97X	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.425336634	2	0.9999972	TCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	87410384	12A2p6	cell line	sgMsh2	87410384	T	-	Deletion	Mutect2;Vardict	2	0.047	154	0	0	NA	exonic	Ugt2b38	frameshift deletion	Ugt2b38:NM_133894:exon6:c.1417delA:p.R473Gfs*4	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.212668317	NA	NA	CTT	frameshift	NA	NA	NA	-1
09-2_par	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	145	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.9949268	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	1	1	1.02E-09	GCA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	87887345	12A2p6	cell line	sgMsh2	87887345	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	69	0	0	NA	exonic	Odam	nonsynonymous SNV	Odam:NM_027128:exon5:c.C167T:p.P56L	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9889704	CCC	nonsynonymous	TCCCT	10	TCCCTTCCCT	NA
09-2_par	chr5	88328658	12A2p6	cell line	sgMsh2	88328658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	126	0	0	NA	exonic	Prol1	synonymous SNV	Prol1:NM_008644:exon3:c.G906A:p.K302K	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.53845808	2	0.958917	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.841623553	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	57	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999988	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	57	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999988	AAC	synonymous	A	5	AAAAA	NA
09-2_par	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	105	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9999333	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	207	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.719452392	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr5	92604963	12A2p6	cell line	sgMsh2	92604963	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	108	0	0	NA	exonic	Stbd1	nonsynonymous SNV	Stbd1:NM_175096:exon2:c.A311C:p.N104T	5qE2	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9671918	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	97391869	12A2p6	cell line	sgMsh2	97391869	A	G	SNV	Mutect2;Vardict	2	0.025	126	0	0	NA	exonic	Naa11	synonymous SNV	Naa11:NM_001033191:exon1:c.T429C:p.D143D	5qE3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.113121445	3	0.9997485	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr5	98981109	12A2p6	cell line	sgMsh2	98981109	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	69	0	0	NA	exonic	Prkg2	nonsynonymous SNV	Prkg2:NM_008926:exon7:c.T967C:p.F323L	5qE3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9826827	AAG	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr5	99234597	12A2p6	cell line	sgMsh2	99234597	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	130	0	0	NA	exonic	Rasgef1b	nonsynonymous SNV	"Rasgef1b:NM_145839:exon5:c.G533T:p.S178I,Rasgef1b:NM_181318:exon5:c.G530T:p.S177I"	5qE3	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9998163	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	1	1	1.28E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Vardict	2	0.03	179	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999464	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	131	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9845344	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr5	105606595	12A2p6	cell line	sgMsh2	105606595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	114	0	0	NA	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A235G:p.T79A	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.914021278	1	1.39E-09	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	109	0	0	NA	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9995637	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	107497764	12A2p6	cell line	sgMsh2	107497764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	86	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon12:c.C1484T:p.A495V	5qE5	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.601806089	1	0.7244037	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	110	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.9281177	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	51	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-3344382-108786463	4	2	2	0.94	4.253366344	NA	1	0.950220141	1	0.9999784	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	109156669	12A2p6	cell line	sgMsh2	109156669	A	C	SNV	Mutect2;Vardict	2	0.019	640	0	0	NA	exonic	Vmn2r13	nonsynonymous SNV	"Vmn2r13:NM_001104624:exon6:c.T1895G:p.L632R,Vmn2r13:NM_001384974:exon6:c.T1892G:p.L631R"	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.085972298	3	1	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	109428355	12A2p6	cell line	sgMsh2	109428355	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.021	445	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon3:c.A1091G:p.N364S,Vmn2r17:NM_001385190:exon3:c.A1091G:p.N364S"	5qF	chr5-108794879-110007284	6	3	3	0.94	4.253366344	NA	1	0.095022014	3	1.00E-09	AAC	nonsynonymous	AACAGC	14	AACAGCAACAGCAA	NA
09-2_par	chr5	110653304	12A2p6	cell line	sgMsh2	110653304	T	C	SNV	Mutect2;Vardict	2	0.138	29	0	0	NA	exonic	Noc4l	synonymous SNV	Noc4l:NM_153570:exon1:c.A36G:p.Q12Q	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.624430378	1	0.6665731	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr5	110685109	12A2p6	cell line	sgMsh2	110685109	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	144	0	0	NA	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon32:c.A6055G:p.T2019A,Ep400:NM_029337:exon33:c.A6163G:p.T2055A"	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.203618602	3	0.9502593	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	112875104	12A2p6	cell line	sgMsh2	112875104	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	70	0	0	NA	exonic	Myo18b	synonymous SNV	Myo18b:NM_028901:exon4:c.C421T:p.L141L	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.325789762	2	0.9519313	AGT	synonymous	NA	NA	NA	NA
09-2_par	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.904971562	1	0.9999983	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	76	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.882347273	1	0.9999979	TTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	118261142	12A2p6	cell line	sgMsh2	118261142	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	142	0	0	NA	exonic	Spring1	nonsynonymous SNV	Spring1:NM_001081236:exon5:c.T577C:p.Y193H	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.09402334	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	122559719	12A2p6	cell line	sgMsh2	122559719	T	C	SNV	Mutect2;Vardict	2	0.032	167	0	0	NA	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon15:c.A1475G:p.H492R,Ift81:NM_001358917:exon16:c.A1694G:p.H565R,Ift81:NM_001358918:exon16:c.A1526G:p.H509R,Ift81:NM_009879:exon16:c.A1694G:p.H565R"	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.14479545	3	0.999775	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.101	68	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.457010639	2	0.9918189	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	123703030	12A2p6	cell line	sgMsh2	123703030	T	C	SNV	Mutect2;Vardict	2	0.031	173	0	0	NA	exonic	Zcchc8	nonsynonymous SNV	Zcchc8:NM_027494:exon12:c.A1196G:p.D399G	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9998887	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	89	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.615380662	1	9.70E-09	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	114	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.656104383	1	0.9920602	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.968319572	1	0.999952	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	128136933	12A2p6	cell line	sgMsh2	128136933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	78	0	0	NA	exonic	Tmem132d	synonymous SNV	Tmem132d:NM_172885:exon3:c.T1062C:p.Y354Y	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	0.5179097	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr5	128602175	12A2p6	cell line	sgMsh2	128602175	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	120	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.T958G:p.F320V	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.6858902	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	129852897	12A2p6	cell line	sgMsh2	129852897	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	78	0	0	NA	exonic	Sumf2	nonsynonymous SNV	Sumf2:NM_026445:exon3:c.A272G:p.Y91C	5qG1.3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9178691	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	63	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.945695283	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	116	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.986419003	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr5	135217642	12A2p6	cell line	sgMsh2	135217642	T	-	Deletion	Mutect2;Vardict	2	0.072	141	0	0	NA	exonic	Baz1b	frameshift deletion	Baz1b:NM_011714:exon7:c.1944delT:p.L650Cfs*2	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.325789762	NA	NA	GTT	frameshift	T	5	TTTTT	-1
09-2_par	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	151	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.832573837	1	1.39E-09	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	137407761	12A2p6	cell line	sgMsh2	137407761	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	127	0	0	NA	exonic	Zan	synonymous SNV	Zan:NM_011741:exon58:c.T11205G:p.T3735T	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.7655584	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	88	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	2	1	1	1.72E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	104	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.719452392	1	0.9997187	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr5	140680848	12A2p6	cell line	sgMsh2	140680848	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	153	0	0	NA	exonic	Iqce	nonsynonymous SNV	"Iqce:NM_001347517:exon13:c.A1007T:p.Q336L,Iqce:NM_028833:exon14:c.A1142T:p.Q381L"	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.998683	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	116	0	0	NA	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.8360278	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
09-2_par	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	114	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.85424	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	112	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.814309	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	145167379	12A2p6	cell line	sgMsh2	145167379	T	C	SNV	Mutect2;Vardict	2	0.083	49	0	0	NA	exonic	Cpsf4	nonsynonymous SNV	"Cpsf4:NM_001291248:exon1:c.T23C:p.V8A,Cpsf4:NM_001291249:exon1:c.T23C:p.V8A,Cpsf4:NM_001374716:exon1:c.T23C:p.V8A,Cpsf4:NM_178576:exon1:c.T23C:p.V8A"	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.964463	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	145777992	12A2p6	cell line	sgMsh2	145777992	G	A	SNV	Mutect2;MuSe;Vardict	3	0.086	131	0	0	NA	exonic	Cyp3a44	nonsynonymous SNV	Cyp3a44:NM_177380:exon12:c.C1348T:p.L450F	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.389137772	2	0.9999291	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	145778001	12A2p6	cell line	sgMsh2	145778001	T	G	SNV	Mutect2;MuSe;Vardict	3	0.076	136	0	0	NA	exonic	Cyp3a44	synonymous SNV	Cyp3a44:NM_177380:exon12:c.A1339C:p.R447R	5qG2	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.343889194	2	0.9989124	CTC	synonymous	NA	NA	NA	NA
09-2_par	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	175	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.76470097	1	1.23E-08	CGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	149593124	12A2p6	cell line	sgMsh2	149593124	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	76	0	0	NA	exonic	Wdr95	nonsynonymous SNV	Wdr95:NM_029440:exon16:c.T1003C:p.F335L	5qG3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.307690331	2	0.9262674	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	85	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-110099887-151647482	4	2	2	0.94	4.253366344	NA	1	0.515833791	2	0.9619009	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Strelka2;Vardict	2	0.2	100	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
09-2_par	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	244	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.244342322	3	0.5401023	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	153	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.2895909	2	0.9697567	TGC	synonymous	NA	NA	NA	NA
09-2_par	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	147	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.484159786	2	0.9997372	CCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	142	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.669678956	1	0.9991914	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	147	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.678728672	1	0.9997061	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	218	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.656104383	1	0.9999029	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	129	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.552032653	2	0.09775615	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.72	119	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	4	1	1	1.00E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
09-2_par	chr6	24104030	12A2p6	cell line	sgMsh2	24104030	T	G	SNV	Mutect2;Vardict	2	0.02	259	0	0	NA	exonic	Slc13a1	nonsynonymous SNV	Slc13a1:NM_019481:exon9:c.A1012C:p.K338Q	6qA3.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.090497156	3	2.64E-09	TTT	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr6	24891511	12A2p6	cell line	sgMsh2	24891511	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	243	0	0	NA	exonic	Hyal5	synonymous SNV	Hyal5:NM_028957:exon4:c.G1323T:p.L441L	6qA3.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.194568886	3	0.9980598	TGA	synonymous	NA	NA	NA	NA
09-2_par	chr6	27363732	12A2p6	cell line	sgMsh2	27363732	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	186	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.A1783T:p.I595F,Grm8:NM_001361125:exon9:c.A1783T:p.I595F,Grm8:NM_008174:exon9:c.A1783T:p.I595F"	6qA3.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.253392037	2	0.6854848	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Vardict	2	0.093	31	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.420811777	2	0.9009342	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	120	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.628955236	1	0.9614733	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	121	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.493209502	2	0.9978926	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	325	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.552032653	2	0.9962653	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	21	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	2	1	1	0.9934197	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	103	0	0	NA	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.312215189	2	0.9729386	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	176	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.633480094	1	0.9943941	ACG	synonymous	NA	NA	NA	NA
09-2_par	chr6	42406138	12A2p6	cell line	sgMsh2	42406138	T	A	SNV	Mutect2;Vardict	2	0.036	135	0	0	NA	exonic	Tas2r135	nonsynonymous SNV	Tas2r135:NM_199159:exon1:c.T610A:p.F204I	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.162894881	3	0.9959962	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	42818052	12A2p6	cell line	sgMsh2	42818052	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	179	0	0	NA	exonic	Olfr450	nonsynonymous SNV	Olfr450:NM_146445:exon1:c.T580G:p.S194A	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	3	0.9968593	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	42927588	12A2p6	cell line	sgMsh2	42927588	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	181	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.G356A:p.R119H	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.180994312	3	0.997062	CGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	219	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	1	0.9994898	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	42956411	12A2p6	cell line	sgMsh2	42956411	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.02	306	0	0	NA	exonic	Olfr444	synonymous SNV	Olfr444:NM_146656:exon1:c.G912A:p.L304L	6qB2.1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.090497156	3	1.04E-09	TGT	synonymous	NA	NA	NA	NA
09-2_par	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Vardict	2	0.048	87	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.217193175	3	0.7496401	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	96	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.61990552	1	0.8884094	GTC	synonymous	NA	NA	NA	NA
09-2_par	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	50	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.574656942	2	0.554433	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	144	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.665154098	1	0.9989382	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	49168507	12A2p6	cell line	sgMsh2	49168507	A	C	SNV	Mutect2;Vardict	2	0.045	96	0	0	NA	exonic	Igf2bp3	nonsynonymous SNV	Igf2bp3:NM_023670:exon3:c.T248G:p.L83R	6qB2.3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.203618602	3	0.8687054	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	57210453	12A2p6	cell line	sgMsh2	57210453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.041	646	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.T596C:p.M199T	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.18551917	3	3.23E-09	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	57432234	12A2p6	cell line	sgMsh2	57432234	T	C	SNV	Mutect2;Vardict	2	0.017	542	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.T544C:p.S182P	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.076922583	3	1	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	163	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.39366263	2	0.999995	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Vardict	2	0.026	213	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.117646303	3	0.9999989	GAC	synonymous	NA	NA	NA	NA
09-2_par	chr6	58308065	12A2p6	cell line	sgMsh2	58308065	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.018	528	0	0	NA	exonic	Vmn1r29	nonsynonymous SNV	Vmn1r29:NM_053232:exon1:c.T769C:p.Y257H	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.081447441	3	1	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	58887413	12A2p6	cell line	sgMsh2	58887413	A	G	SNV	Mutect2;Vardict	2	0.065	62	0	0	NA	exonic	Herc3	synonymous SNV	"Herc3:NM_001361967:exon18:c.A2031G:p.A677A,Herc3:NM_028705:exon18:c.A2031G:p.A677A,Herc3:NM_001361966:exon19:c.A2031G:p.A677A"	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.294115758	2	0.8433855	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	184	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.407237203	2	0.9999997	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.082	289	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.371038341	2	1.37E-08	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	262	0	0	NA	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.276016327	2	0.9817402	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr6	66553615	12A2p6	cell line	sgMsh2	66553615	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.022	802	0	0	NA	exonic	Vmn1r32	nonsynonymous SNV	Vmn1r32:NM_134170:exon3:c.T176C:p.I59T	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.099546872	3	1	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	165	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.615380662	1	0.9586827	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	71509142	12A2p6	cell line	sgMsh2	71509142	A	G	SNV	Mutect2;Vardict	2	0.022	322	0	0	NA	exonic	Rnf103	synonymous SNV	"Rnf103:NM_001308303:exon4:c.A234G:p.A78A,Rnf103:NM_009543:exon4:c.A756G:p.A252A"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.099546872	3	1.05E-09	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	173	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.615380662	1	0.9643305	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	71907676	12A2p6	cell line	sgMsh2	71907676	T	C	SNV	Mutect2;Vardict	2	0.059	67	0	0	NA	exonic	Ptcd3	nonsynonymous SNV	"Ptcd3:NM_001362068:exon3:c.A174G:p.I58M,Ptcd3:NM_001362069:exon3:c.A174G:p.I58M,Ptcd3:NM_027275:exon3:c.A174G:p.I58M"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.266966611	2	0.7080631	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.592756373	1	0.5787542	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	121	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.841623553	1	1.66E-08	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	230	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.497734359	2	0.999985	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	85	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.2895909	2	0.8838354	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	67	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.8427468	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	127	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.837098695	1	9.87E-09	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	33	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.769225828	1	0.9714957	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	47	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.660629241	1	0.8916038	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	89714446	12A2p6	cell line	sgMsh2	89714446	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	562	0	0	NA	exonic	Vmn1r40	nonsynonymous SNV	Vmn1r40:NM_053228:exon1:c.T244G:p.S82A	6qD1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.14479545	3	1.00E-09	TTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	160	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.561082369	2	0.8727426	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Vardict	2	0.048	89	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.217193175	3	0.7553253	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	214	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.755651255	1	1.58E-09	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	121	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.515833791	2	0.9899781	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	147	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.787325259	1	3.25E-08	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
09-2_par	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	83	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.950220141	1	2.64E-08	CGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	122	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.647054667	1	0.9893884	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	65	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
09-2_par	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	158	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.873297558	1	1.00E-09	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
09-2_par	chr6	122079585	12A2p6	cell line	sgMsh2	122079585	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	224	0	0	NA	exonic	Mug2	nonsynonymous SNV	Mug2:NM_008646:exon28:c.C3488A:p.P1163H	6qF1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.230767748	3	0.8399884	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	147	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.497734359	2	0.9991767	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.02	516	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.090497156	3	1	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr6	123786752	12A2p6	cell line	sgMsh2	123786752	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	506	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon3:c.T587C:p.V196A	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.10407173	3	1	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	124026107	12A2p6	cell line	sgMsh2	124026107	A	G	SNV	Mutect2;Vardict	2	0.044	437	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon2:c.A475G:p.I159V	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.199093744	3	0.9999701	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	124061822	12A2p6	cell line	sgMsh2	124061822	A	-	Deletion	Mutect2;Vardict	2	0.031	489	0	0	NA	exonic	Vmn2r26	frameshift deletion	Vmn2r26:NM_019917:exon6:c.2355delA:p.T787Qfs*20	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.140270592	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	78	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.606330947	1	0.7460788	GAT	synonymous	NA	NA	NA	NA
09-2_par	chr6	124580402	12A2p6	cell line	sgMsh2	124580402	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	169	0	0	NA	exonic	C1rb	synonymous SNV	C1rb:NM_001113356:exon11:c.A1497G:p.A499A	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.244342322	3	0.5100724	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Vardict	2	0.07	83	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.316740047	NA	NA	CGG	frameshift	NA	NA	NA	-1
09-2_par	chr6	125101957	12A2p6	cell line	sgMsh2	125101957	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	105	0	0	NA	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon7:c.C854A:p.A285D,Chd4:NM_145979:exon7:c.C854A:p.A285D"	6qF2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.303165473	2	0.959663	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	84	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.375563198	2	0.9964142	CTG	synonymous	CTGG	8	CTGGCTGG	NA
09-2_par	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	201	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.53845808	2	0.993441	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	158	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.457010639	2	0.9999878	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	98	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.954744998	1	1.83E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	132856177	12A2p6	cell line	sgMsh2	132856177	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	167	0	0	NA	exonic	Tas2r116	nonsynonymous SNV	Tas2r116:NM_053212:exon1:c.A740G:p.H247R	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.135745734	3	0.9998948	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	152	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	2	1	1	1	GTG	synonymous	NA	NA	NA	NA
09-2_par	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	88	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.82804898	1	0.9999958	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	156	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.606330947	1	0.8969709	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	181	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.375563198	2	0.9999931	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	134725913	12A2p6	cell line	sgMsh2	134725913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	127	0	0	NA	exonic	Dusp16	nonsynonymous SNV	"Dusp16:NM_001048054:exon5:c.A614G:p.H205R,Dusp16:NM_130447:exon5:c.A614G:p.H205R"	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.389137772	2	0.9999057	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	126	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.425336634	2	0.9999776	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	78	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.235292606	3	8.29E-08	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	135	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.343889194	2	0.9988584	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
09-2_par	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	93	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.642529809	1	0.9613646	ATT	synonymous	NA	NA	NA	NA
09-2_par	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.624430378	1	0.8737674	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	141834637	12A2p6	cell line	sgMsh2	141834637	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	315	0	0	NA	exonic	Slco1a4	synonymous SNV	"Slco1a4:NM_001355577:exon6:c.A426G:p.P142P,Slco1a4:NM_030687:exon7:c.A426G:p.P142P"	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.122171161	3	3.98E-09	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr6	141911879	12A2p6	cell line	sgMsh2	141911879	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	199	0	0	NA	exonic	Slco1a1	stopgain	Slco1a1:NM_013797:exon13:c.T1725A:p.C575X	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.14479545	3	0.9999569	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	142764387	12A2p6	cell line	sgMsh2	142764387	A	G	SNV	Mutect2;Vardict	2	0.032	169	0	0	NA	exonic	Cmas	nonsynonymous SNV	Cmas:NM_009908:exon2:c.A355G:p.T119A	6qG2	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	1	0.14479545	3	0.9997971	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	164	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.94	4.253366344	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
09-2_par	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1694	183	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
09-2_par	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	80	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-3716454	4	2	2	0.94	4.253366344	NA	1	0.461535497	2	0.9958929	CGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;MuSe;Vardict	3	0.058	305	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.9253983	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Vardict	2	0.031	198	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999711	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	5195757	12A2p6	cell line	sgMsh2	5195757	C	-	Deletion	Mutect2;Vardict	2	0.033	226	0	0	NA	exonic	Vmn1r56	frameshift deletion	Vmn1r56:NM_030740:exon1:c.860delG:p.G287Vfs*14	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.149320308	NA	NA	ACC	frameshift	NA	NA	NA	-1
09-2_par	chr7	6060633	12A2p6	cell line	sgMsh2	6060633	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	184	0	0	NA	exonic	Nlrp4c	synonymous SNV	Nlrp4c:NM_031389:exon2:c.C39T:p.Y13Y	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.407237203	2	0.9999997	ACT	synonymous	NA	NA	NA	NA
09-2_par	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	18	0	0	NA	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.904971562	1	0.9650403	AGG	synonymous	NA	NA	NA	NA
09-2_par	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	153	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.809949548	1	3.15E-09	CCC	synonymous	NA	NA	NA	NA
09-2_par	chr7	7132888	12A2p6	cell line	sgMsh2	7132888	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	125	0	0	NA	exonic	Zfp773	synonymous SNV	Zfp773:NM_029584:exon4:c.T708C:p.S236S	7qA1	chr7-3896664-7297085	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.8424628	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr7	8244804	12A2p6	cell line	sgMsh2	8244804	T	G	SNV	Mutect2;Vardict	2	0.014	990	0	0	NA	exonic	Vmn2r43	nonsynonymous SNV	Vmn2r43:NM_198961:exon6:c.A2359C:p.K787Q	7qA1	chr7-7312117-10173883	6	3	3	0.94	4.253366344	NA	1	0.063348009	3	1	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	12259785	12A2p6	cell line	sgMsh2	12259785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	149	0	0	NA	exonic	Vmn1r81	nonsynonymous SNV	Vmn1r81:NM_134210:exon1:c.T895C:p.F299L	7qA1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9984246	AAT	nonsynonymous	A	5	AAAAA	NA
09-2_par	chr7	13036251	12A2p6	cell line	sgMsh2	13036251	T	G	SNV	Mutect2;Vardict	2	0.03	139	0	0	NA	exonic	Ube2m	nonsynonymous SNV	"Ube2m:NM_001243968:exon4:c.A218C:p.N73T,Ube2m:NM_145578:exon4:c.A308C:p.N103T,Ube2m:NM_001168469:exon5:c.A17C:p.N6T"	7qA1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9994923	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	15397023	12A2p6	cell line	sgMsh2	15397023	T	G	SNV	Mutect2;Vardict	2	0.039	384	0	0	NA	exonic	Obox2	nonsynonymous SNV	Obox2:NM_145708:exon2:c.T179G:p.L60R	7qA2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9999986	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	16218656	12A2p6	cell line	sgMsh2	16218656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	44	0	0	NA	exonic	Dhx34	stopgain	"Dhx34:NM_001285931:exon2:c.C43T:p.R15X,Dhx34:NM_001285932:exon2:c.C43T:p.R15X,Dhx34:NM_027883:exon2:c.C43T:p.R15X"	7qA2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.701352961	1	0.9524891	CGG	nonsynonymous	GGTCTC	15	GGTCTCGGTCTCGGT	NA
09-2_par	chr7	16248403	12A2p6	cell line	sgMsh2	16248403	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	48	0	0	NA	exonic	C5ar1	nonsynonymous SNV	"C5ar1:NM_001173550:exon2:c.T691G:p.W231G,C5ar1:NM_007577:exon3:c.T691G:p.W231G"	7qA2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.389137772	2	0.969992	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	194	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.244342322	3	0.5201012	ACA	synonymous	NA	NA	NA	NA
09-2_par	chr7	18680865	12A2p6	cell line	sgMsh2	18680865	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	234	0	0	NA	exonic	Psg20	synonymous SNV	Psg20:NM_054058:exon5:c.T1104C:p.H368H	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999976	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	71	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.846148411	1	0.9999781	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	71	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.674203814	1	0.9767843	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	21272384	12A2p6	cell line	sgMsh2	21272384	C	T	SNV	Mutect2;MuSe;Vardict	3	0.076	335	0	0	NA	exonic	Vmn1r125	nonsynonymous SNV	Vmn1r125:NM_001166740:exon1:c.C206T:p.T69I	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.343889194	2	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	23301402	12A2p6	cell line	sgMsh2	23301402	A	T	SNV	Mutect2;Vardict	2	0.06	146	0	0	NA	exonic	Nlrp4e	nonsynonymous SNV	Nlrp4e:NM_001004194:exon1:c.A121T:p.I41F	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.879793	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	64	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.999993577	1	0.9999998	CGC	synonymous	C	5	CCCCC	NA
09-2_par	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	47	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999869	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	79	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.552032653	2	0.7964492	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	27158172	12A2p6	cell line	sgMsh2	27158172	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	162	0	0	NA	exonic	Cyp2t4	synonymous SNV	Cyp2t4:NM_001100184:exon9:c.A1209G:p.L403L	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.974868	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr7	27817904	12A2p6	cell line	sgMsh2	27817904	T	C	SNV	Mutect2;Vardict	2	0.048	87	0	0	NA	exonic	Zfp626	synonymous SNV	Zfp626:NM_027703:exon4:c.T309C:p.S103S	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.7496401	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr7	27817910	12A2p6	cell line	sgMsh2	27817910	T	C	SNV	Mutect2;Vardict	2	0.047	88	0	0	NA	exonic	Zfp626	synonymous SNV	Zfp626:NM_027703:exon4:c.T315C:p.N105N	7qA3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7878893	ATA	synonymous	NA	NA	NA	NA
09-2_par	chr7	30751959	12A2p6	cell line	sgMsh2	30751959	-	G	Insertion	Mutect2;Vardict	2	0.031	391	0	0	NA	exonic	Sbsn	frameshift insertion	Sbsn:NM_172205:exon1:c.399dupG:p.S136Qfs*1	7qB1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.140270592	NA	NA	CAG	frameshift	G	5	GGGGG	1
09-2_par	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	166	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.864247842	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	159	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.882347273	NA	NA	GCC	frameshift	NA	NA	NA	-1
09-2_par	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	98	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.886872131	1	3.86E-08	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	41837218	12A2p6	cell line	sgMsh2	41837218	G	A	SNV	Mutect2;Vardict	2	0.029	435	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon6:c.C2252T:p.T751I	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.131220877	3	1.01E-09	AGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	42043804	12A2p6	cell line	sgMsh2	42043804	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	256	0	0	NA	exonic	Vmn2r59	nonsynonymous SNV	Vmn2r59:NM_001105056:exon4:c.T1371G:p.H457Q	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.135745734	3	0.9999993	CAT	nonsynonymous	C	5	CCCCC	NA
09-2_par	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	380	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.850673269	1	1	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr7	43721035	12A2p6	cell line	sgMsh2	43721035	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	78	0	0	NA	exonic	Klk13	nonsynonymous SNV	Klk13:NM_001039042:exon3:c.T121C:p.Y41H	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.244342322	2	0.5264409	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	50	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999936	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	44896915	12A2p6	cell line	sgMsh2	44896915	T	C	SNV	Mutect2;Vardict	2	0.038	107	0	0	NA	exonic	Fuz	synonymous SNV	Fuz:NM_027376:exon3:c.T234C:p.S78S	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.171944597	3	0.9789035	GTA	synonymous	NA	NA	NA	NA
09-2_par	chr7	44973860	12A2p6	cell line	sgMsh2	44973860	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	90	0	0	NA	exonic	Cpt1c	nonsynonymous SNV	"Cpt1c:NM_001252470:exon2:c.A8G:p.E3G,Cpt1c:NM_001357670:exon2:c.A8G:p.E3G,Cpt1c:NM_153679:exon2:c.A8G:p.E3G"	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.371038341	2	0.9970291	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	84	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.384612914	2	0.9975093	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr7	45521948	12A2p6	cell line	sgMsh2	45521948	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	exonic	Tulp2	synonymous SNV	"Tulp2:NM_001290996:exon9:c.A1173G:p.V391V,Tulp2:NM_001290998:exon9:c.A1116G:p.V372V,Tulp2:NM_001290999:exon9:c.A1152G:p.V384V,Tulp2:NM_001045555:exon12:c.A1488G:p.V496V,Tulp2:NM_008807:exon12:c.A1488G:p.V496V"	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.8692188	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr7	45626098	12A2p6	cell line	sgMsh2	45626098	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	68	0	0	NA	exonic	Izumo1	nonsynonymous SNV	Izumo1:NM_001018013:exon9:c.A830T:p.H277L	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.966749	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	50	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.61990552	1	0.7458173	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	68	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.420811777	2	0.9960341	GTG	synonymous	GT	8	GTGTGTGT	NA
09-2_par	chr7	55933072	12A2p6	cell line	sgMsh2	55933072	A	C	SNV	Mutect2;Vardict	2	0.047	106	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.T729G:p.S243R,Nipa2:NM_001256131:exon6:c.T924G:p.S308R,Nipa2:NM_001256130:exon7:c.T924G:p.S308R,Nipa2:NM_001256132:exon7:c.T924G:p.S308R,Nipa2:NM_023647:exon7:c.T924G:p.S308R"	7qB5	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.8358876	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	56113411	12A2p6	cell line	sgMsh2	56113411	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	224	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon19:c.A2763G:p.E921E,Herc2:NM_010418:exon19:c.A2763G:p.E921E"	7qB5	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.7592012	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	18	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.950220141	NA	NA	TCC	frameshift	C	5	CCCCC	-1
09-2_par	chr7	64234974	12A2p6	cell line	sgMsh2	64234974	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	114	0	0	NA	exonic	Trpm1	nonsynonymous SNV	Trpm1:NM_001039104:exon18:c.T2402C:p.L801P	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.167419739	3	0.9874196	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	64353613	12A2p6	cell line	sgMsh2	64353613	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	95	0	0	NA	exonic	Fan1	synonymous SNV	Fan1:NM_177893:exon10:c.G2460T:p.L820L	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9936395	CCA	synonymous	NA	NA	NA	NA
09-2_par	chr7	65929121	12A2p6	cell line	sgMsh2	65929121	C	T	SNV	Mutect2;Vardict	2	0.025	260	0	0	NA	exonic	Pcsk6	synonymous SNV	"Pcsk6:NM_001291184:exon5:c.C642T:p.S214S,Pcsk6:NM_011048:exon5:c.C642T:p.S214S"	7qC	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.113121445	3	3.02E-08	GCT	synonymous	NA	NA	NA	NA
09-2_par	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	82	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.914021278	1	0.9999998	CAG	synonymous	AGA	8	AGAAGAAG	NA
09-2_par	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	102	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.325789762	2	0.9858827	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	80717097	12A2p6	cell line	sgMsh2	80717097	T	A	SNV	Mutect2;Vardict	2	0.036	92	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon37:c.A4774T:p.I1592F	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.162894881	3	0.9755357	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	37	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	1	1	0.9998561	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	110	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.570132084	2	0.6805715	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	179	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.746601539	1	4.86E-08	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	85871517	12A2p6	cell line	sgMsh2	85871517	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	335	0	0	NA	exonic	Vmn2r73	synonymous SNV	Vmn2r73:NM_001105186:exon3:c.A1242G:p.T414T	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	1.88E-08	ATG	synonymous	NA	NA	NA	NA
09-2_par	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	122	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.601806089	1	0.7981016	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	250	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.791850117	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr7	86585643	12A2p6	cell line	sgMsh2	86585643	G	A	SNV	Mutect2;MuSe;Vardict	3	0.075	309	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.G367A:p.A123T	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9999995	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.191	135	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.864247842	NA	NA	GGT	frameshift	T	5	TTTTT	1
09-2_par	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	308	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.687778387	1	9.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	101502559	12A2p6	cell line	sgMsh2	101502559	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	141	0	0	NA	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon11:c.T860C:p.V287A,Pde2a:NM_001008548:exon12:c.T881C:p.V294A,Pde2a:NM_001143848:exon12:c.T881C:p.V294A,Pde2a:NM_001243757:exon12:c.T824C:p.V275A,Pde2a:NM_001243758:exon12:c.T911C:p.V304A"	7qE2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9919114	GTG	nonsynonymous	GGT	8	GGTGGTGG	NA
09-2_par	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	78	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-10175819-102421810	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	0.9999949	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	101	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.561082369	2	0.7718036	CTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	103172937	12A2p6	cell line	sgMsh2	103172937	C	A	SNV	Mutect2;Vardict	2	0.037	199	0	0	NA	exonic	Olfr591	nonsynonymous SNV	Olfr591:NM_001011847:exon1:c.G699T:p.K233N	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.167419739	3	0.9995856	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	103212293	12A2p6	cell line	sgMsh2	103212293	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	160	0	0	NA	exonic	Olfr593	nonsynonymous SNV	Olfr593:NM_146380:exon1:c.A432C:p.R144S	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.171944597	3	0.9971356	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	103470081	12A2p6	cell line	sgMsh2	103470081	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	193	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.A41G:p.Y14C	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.221718033	3	0.09319474	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	104274785	12A2p6	cell line	sgMsh2	104274785	T	C	SNV	Mutect2;Vardict	2	0.08	51	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon5:c.A758G:p.N253S	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.361988625	2	0.9581062	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	104329644	12A2p6	cell line	sgMsh2	104329644	C	A	SNV	Mutect2;Vardict	2	0.057	70	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon1:c.C97A:p.L33I	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.257916895	2	0.6448962	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	84	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.782800402	1	0.9999355	AGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	173	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.705877819	1	0.9999953	TCC	synonymous	NA	NA	NA	NA
09-2_par	chr7	104636427	12A2p6	cell line	sgMsh2	104636427	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	236	0	0	NA	exonic	Olfr657	nonsynonymous SNV	Olfr657:NM_146312:exon1:c.T752G:p.L251R	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.176469455	3	0.9997268	CTC	nonsynonymous	CCTCAT	16	CCTCATCCTCATCCTC	NA
09-2_par	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	378	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-102425657-105369630	3	2	1	0.94	4.253366344	NA	1	0.135745734	3	1.74E-09	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Strelka2;Vardict	2	0.1826	115	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.826239037	NA	NA	ACC	frameshift	C	5	CCCCC	-1
09-2_par	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	218	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.343889194	2	0.9999795	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr7	106886521	12A2p6	cell line	sgMsh2	106886521	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	167	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.C295A:p.L99I	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.271491469	2	0.09590939	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	178	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.696828103	1	0.9999917	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	199	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.837098695	1	1.00E-09	ATG	nonsynonymous	G	5	GGGGG	NA
09-2_par	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	305	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.809949548	1	1	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.02	405	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.090497156	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	108422636	12A2p6	cell line	sgMsh2	108422636	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	362	0	0	NA	exonic	Olfr497	nonsynonymous SNV	Olfr497:NM_146738:exon1:c.G64A:p.D22N	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.113121445	3	1.03E-09	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	108523091	12A2p6	cell line	sgMsh2	108523091	G	-	Deletion	Mutect2;Vardict	2	0.019	384	0	0	NA	exonic	Olfr502	frameshift deletion	Olfr502:NM_146739:exon1:c.858delC:p.M287Cfs*1	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.085972298	NA	NA	TGG	frameshift	NA	NA	NA	-1
09-2_par	chr7	108544783	12A2p6	cell line	sgMsh2	108544783	T	C	SNV	Mutect2;Vardict	2	0.027	266	0	0	NA	exonic	Olfr503	nonsynonymous SNV	Olfr503:NM_001011527:exon1:c.T257C:p.L86P	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.168	300	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.760176112	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	110130973	12A2p6	cell line	sgMsh2	110130973	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	130	0	0	NA	exonic	Wee1	nonsynonymous SNV	Wee1:NM_009516:exon6:c.C1283A:p.P428H	7qE3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.352938909	2	0.9991948	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	97	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.647054667	1	0.9735087	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	185	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.850673269	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	135	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.497734359	2	0.9985319	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	119477169	12A2p6	cell line	sgMsh2	119477169	A	G	SNV	Mutect2;Vardict	2	0.064	63	0	0	NA	exonic	Umod	nonsynonymous SNV	"Umod:NM_001278605:exon3:c.T373C:p.C125R,Umod:NM_009470:exon3:c.T373C:p.C125R"	7qF2	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.2895909	2	0.8268902	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	83	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	1	1	3.38E-09	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	122071974	12A2p6	cell line	sgMsh2	122071974	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	71	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon5:c.C872T:p.T291I	7qF2	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.321264905	2	0.9460313	ACC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	122671909	12A2p6	cell line	sgMsh2	122671909	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	102	0	0	NA	exonic	Cacng3	nonsynonymous SNV	Cacng3:NM_019430:exon1:c.A136G:p.S46G	7qF2	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.230767748	3	0.6522985	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	126552124	12A2p6	cell line	sgMsh2	126552124	T	C	SNV	Mutect2;Vardict	2	0.047	83	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon16:c.A2027G:p.N676S	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7728645	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	80	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9806529	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	127235617	12A2p6	cell line	sgMsh2	127235617	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	80	0	0	NA	exonic	Zfp553	nonsynonymous SNV	"Zfp553:NM_001360912:exon2:c.G343A:p.V115I,Zfp553:NM_146201:exon2:c.G343A:p.V115I"	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.294115758	2	0.8914429	CGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	127559880	12A2p6	cell line	sgMsh2	127559880	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	127	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.T8927C:p.I2976T	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.199093744	3	0.9460087	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	82	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	1	1	4.03E-09	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	53	0	0	NA	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.511308933	2	0.8954611	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	178	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.710402677	1	0.9999979	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	128682320	12A2p6	cell line	sgMsh2	128682320	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	139	0	0	NA	exonic	Inpp5f	nonsynonymous SNV	Inpp5f:NM_178641:exon14:c.T1642C:p.Y548H	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	0.9914519	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	135152261	12A2p6	cell line	sgMsh2	135152261	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	88	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon47:c.C4766T:p.A1589V	7qF3	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.316740047	2	0.9642378	GCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2676	71	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
09-2_par	chr7	141637514	12A2p6	cell line	sgMsh2	141637514	T	C	SNV	Mutect2;Vardict	2	0.032	186	0	0	NA	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.A6930G:p.P2310P	7qF5	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.14479545	3	0.9999157	GTG	synonymous	TG	8	TGTGTGTG	NA
09-2_par	chr7	141805480	12A2p6	cell line	sgMsh2	141805480	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	134	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon29:c.C3786A:p.R1262R	7qF5	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9896355	GCT	synonymous	NA	NA	NA	NA
09-2_par	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	61	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.669678956	1	0.9549351	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	61	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-105374794-145323643	4	2	2	0.94	4.253366344	NA	1	0.561082369	2	0.6768111	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	222	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.818999264	1	1.00E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
09-2_par	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	157	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.85392	AAG	synonymous	NA	NA	NA	NA
09-2_par	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	72	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.710402677	1	0.9949559	TCG	synonymous	NA	NA	NA	NA
09-2_par	chr8	15029111	12A2p6	cell line	sgMsh2	15029111	T	G	SNV	Mutect2;Vardict	2	0.069	59	0	0	NA	exonic	Kbtbd11	nonsynonymous SNV	Kbtbd11:NM_029116:exon2:c.T1709G:p.I570S	8qA1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.312215189	2	9.78E-05	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	22176905	12A2p6	cell line	sgMsh2	22176905	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	123	0	0	NA	exonic	Ckap2	synonymous SNV	Ckap2:NM_001004140:exon4:c.T939C:p.D313D	8qA2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.7601326	CAT	synonymous	NA	NA	NA	NA
09-2_par	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	62	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.859722984	1	0.9999473	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	24646316	12A2p6	cell line	sgMsh2	24646316	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	127	0	0	NA	exonic	Adam18	synonymous SNV	Adam18:NM_010084:exon12:c.A1188G:p.E396E	8qA2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.7655584	CTT	synonymous	NA	NA	NA	NA
09-2_par	chr8	24674051	12A2p6	cell line	sgMsh2	24674051	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	140	0	0	NA	exonic	Adam18	nonsynonymous SNV	Adam18:NM_010084:exon2:c.G115A:p.D39N	8qA2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9916195	TCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	106	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Vardict	2	0.063	66	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.285066042	2	0.8141274	GGG	synonymous	NA	NA	NA	NA
09-2_par	chr8	40499372	12A2p6	cell line	sgMsh2	40499372	A	G	SNV	Mutect2;Vardict	2	0.075	54	0	0	NA	exonic	Cnot7	nonsynonymous SNV	"Cnot7:NM_001361938:exon4:c.T541C:p.F181L,Cnot7:NM_001271542:exon5:c.T541C:p.F181L,Cnot7:NM_001271543:exon5:c.T541C:p.F181L,Cnot7:NM_011135:exon5:c.T541C:p.F181L,Cnot7:NM_001361939:exon6:c.T580C:p.F194L"	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.339364336	2	0.9380304	AAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	255	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.162894881	3	0.9999757	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	43521301	12A2p6	cell line	sgMsh2	43521301	A	G	SNV	Mutect2;Vardict	2	0.026	201	0	0	NA	exonic	Adam26b	synonymous SNV	Adam26b:NM_001009547:exon2:c.T663C:p.D221D	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.117646303	3	0.9999975	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr8	43625865	12A2p6	cell line	sgMsh2	43625865	G	T	SNV	Mutect2;Vardict	2	0.017	419	0	0	NA	exonic	Adam34l	nonsynonymous SNV	Adam34l:NM_001025240:exon2:c.C1321A:p.L441I	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.076922583	3	1	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	433	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.782800402	1	1	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	45277024	12A2p6	cell line	sgMsh2	45277024	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	92	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon8:c.A819C:p.E273D	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.7993767	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	45943184	12A2p6	cell line	sgMsh2	45943184	A	C	SNV	Mutect2;Vardict	2	0.037	137	0	0	NA	exonic	Ccdc110	nonsynonymous SNV	Ccdc110:NM_001033246:exon6:c.A2111C:p.N704T	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.167419739	3	0.9949827	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	147	0	0	NA	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.561082369	2	0.8544167	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	91	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.515833791	2	0.9694138	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	74	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
09-2_par	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	101	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.968319572	1	1.20E-09	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	115	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.8856984	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	105	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.742076681	1	0.9999333	ACG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	62064438	12A2p6	cell line	sgMsh2	62064438	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	80	0	0	NA	exonic	Anxa10	nonsynonymous SNV	"Anxa10:NM_011922:exon6:c.A440C:p.Y147S,Anxa10:NM_001136089:exon7:c.A500C:p.Y167S"	8qB3.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.09214956	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	56	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.61990552	1	0.7697075	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	69815491	12A2p6	cell line	sgMsh2	69815491	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	84	0	0	NA	exonic	Gmip	nonsynonymous SNV	Gmip:NM_198101:exon12:c.G1194T:p.E398D	8qB3.3	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.407237203	2	0.9988484	AGG	nonsynonymous	GGA	11	GGAGGAGGAGG	NA
09-2_par	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	34	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	1	1	0.9997051	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
09-2_par	chr8	72253567	12A2p6	cell line	sgMsh2	72253567	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	133	0	0	NA	exonic	Ap1m1	synonymous SNV	Ap1m1:NM_007456:exon9:c.T981C:p.T327T	8qB3.3	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9855213	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr8	84135083	12A2p6	cell line	sgMsh2	84135083	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	231	0	0	NA	exonic	Cc2d1a	nonsynonymous SNV	"Cc2d1a:NM_001381872:exon20:c.A1976G:p.K659R,Cc2d1a:NM_001381871:exon21:c.A2180G:p.K727R,Cc2d1a:NM_001381873:exon21:c.A2087G:p.K696R,Cc2d1a:NM_145970:exon21:c.A2183G:p.K728R"	8qC2	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.14479545	3	0.9999918	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	88729553	12A2p6	cell line	sgMsh2	88729553	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	86	0	0	NA	exonic	Cyld	synonymous SNV	"Cyld:NM_173369:exon7:c.T1221C:p.S407S,Cyld:NM_001128170:exon8:c.T1230C:p.S410S,Cyld:NM_001128171:exon8:c.T1221C:p.S407S"	8qC3	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.276016327	2	0.8120214	CTA	synonymous	NA	NA	NA	NA
09-2_par	chr8	92678500	12A2p6	cell line	sgMsh2	92678500	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	67	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.C995T:p.T332M,Irx6:NM_022428:exon5:c.C995T:p.T332M"	8qC5	chr8-3154030-92679958	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9956101	ACG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	136	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9868864	CAA	synonymous	NA	NA	NA	NA
09-2_par	chr8	94346393	12A2p6	cell line	sgMsh2	94346393	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	110	0	0	NA	exonic	Slc12a3	nonsynonymous SNV	"Slc12a3:NM_001205311:exon17:c.T2143A:p.L715M,Slc12a3:NM_019415:exon17:c.T2140A:p.L714M"	8qC5	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.298640616	2	0.9551635	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.101	59	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.457010639	2	0.9841327	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	229	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.398187487	2	2.41E-08	GAC	synonymous	NA	NA	NA	NA
09-2_par	chr8	105308779	12A2p6	cell line	sgMsh2	105308779	G	A	SNV	Mutect2;Vardict	2	0.059	84	0	0	NA	exonic	Elmo3	synonymous SNV	Elmo3:NM_172760:exon15:c.G1506A:p.L502L	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.7411911	TGA	synonymous	NA	NA	NA	NA
09-2_par	chr8	105842526	12A2p6	cell line	sgMsh2	105842526	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	113	0	0	NA	exonic	Tsnaxip1	nonsynonymous SNV	Tsnaxip1:NM_024445:exon12:c.T1507C:p.F503L	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.334839478	2	0.9944782	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;MuSe;Vardict	3	0.129	69	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.583706658	1	0.514664	TTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	113	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	0.5517011	GCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	56	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.714927534	1	0.9859829	GGC	synonymous	NA	NA	NA	NA
09-2_par	chr8	105985186	12A2p6	cell line	sgMsh2	105985186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	123	0	0	NA	exonic	Dpep2	nonsynonymous SNV	"Dpep2:NM_001301205:exon10:c.A1029C:p.K343N,Dpep2:NM_001301204:exon11:c.A1308C:p.K436N,Dpep2:NM_176913:exon12:c.A1608C:p.K536N"	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.407237203	2	0.9999549	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	106935824	12A2p6	cell line	sgMsh2	106935824	C	A	SNV	Mutect2;Vardict	2	0.5	6	0	0	NA	exonic	Sntb2	nonsynonymous SNV	"Sntb2:NM_001368316:exon1:c.C23A:p.T8N,Sntb2:NM_009229:exon1:c.C23A:p.T8N"	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	2	1	1	0.7939341	ACC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	127	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.995468719	1	1.00E-09	GAG	synonymous	NA	NA	NA	NA
09-2_par	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	390	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.932120709	1	1	ACA	synonymous	NA	NA	NA	NA
09-2_par	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	83	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.76470097	1	0.999829	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	132	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.208143459	3	0.9156287	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	96	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.68325353	1	0.9961527	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	114151812	12A2p6	cell line	sgMsh2	114151812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	174	0	0	NA	exonic	Nudt7	synonymous SNV	"Nudt7:NM_001290181:exon4:c.T579C:p.D193D,Nudt7:NM_024437:exon4:c.T507C:p.D169D,Nudt7:NM_024446:exon4:c.T447C:p.D149D"	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.375563198	2	0.9999892	ATT	synonymous	NA	NA	NA	NA
09-2_par	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	12	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	1	1	0.9455788	TTG	synonymous	NA	NA	NA	NA
09-2_par	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	107	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.959269856	1	1.09E-09	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
09-2_par	chr8	123911799	12A2p6	cell line	sgMsh2	123911799	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	123	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon20:c.C2791T:p.H931Y	8qE2	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.266966611	2	0.8074245	TGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	123911803	12A2p6	cell line	sgMsh2	123911803	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	126	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon20:c.A2787C:p.Q929H	8qE2	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	0.262441753	2	0.76421	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	87	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-92830365-129138455	4	2	2	0.94	4.253366344	NA	1	1	1	1.91E-09	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	124	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9985333	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	69	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.642529809	1	0.915487	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	18363158	12A2p6	cell line	sgMsh2	18363158	C	A	SNV	Mutect2;Vardict	2	0.054	76	0	0	NA	exonic	Naalad2	stopgain	"Naalad2:NM_028279:exon8:c.G973T:p.G325X,Naalad2:NM_001357400:exon10:c.G1087T:p.G363X,Naalad2:NM_001357399:exon11:c.G1087T:p.G363X"	9qA2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.244342322	2	0.5272416	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	19137404	12A2p6	cell line	sgMsh2	19137404	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	264	0	0	NA	exonic	Olfr837	nonsynonymous SNV	Olfr837:NM_146565:exon1:c.A410G:p.N137S	9qA2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.140270592	3	0.9999992	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	137	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.696828103	1	0.9998764	TAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	20260002	12A2p6	cell line	sgMsh2	20260002	T	C	SNV	Mutect2;Vardict	2	0.022	286	0	0	NA	exonic	Olfr872	nonsynonymous SNV	Olfr872:NM_146560:exon2:c.T161C:p.L54P	9qA3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.099546872	3	1.72E-09	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	81	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.348414052	2	0.9871291	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	24485074	12A2p6	cell line	sgMsh2	24485074	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	105	0	0	NA	exonic	Dpy19l1	synonymous SNV	"Dpy19l1:NM_001359948:exon3:c.C345T:p.N115N,Dpy19l1:NM_172920:exon3:c.C345T:p.N115N"	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9998464	CGT	synonymous	NA	NA	NA	NA
09-2_par	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	154	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.850673269	1	1.05E-09	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
09-2_par	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	33	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.68325353	1	0.8703401	TCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	32260264	12A2p6	cell line	sgMsh2	32260264	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	120	0	0	NA	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon13:c.C4339T:p.R1447C,Arhgap32:NM_001195632:exon22:c.C5386T:p.R1796C,Arhgap32:NM_001370957:exon22:c.C5266T:p.R1756C,Arhgap32:NM_001370958:exon23:c.C5308T:p.R1770C"	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.226242891	3	0.7415618	GCG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	37406037	12A2p6	cell line	sgMsh2	37406037	T	C	SNV	Mutect2;Vardict	2	0.062	65	0	0	NA	exonic	Robo4	synonymous SNV	"Robo4:NM_001309390:exon9:c.T1461C:p.T487T,Robo4:NM_028783:exon9:c.T1461C:p.T487T"	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.280541184	2	0.7875537	CTG	synonymous	NA	NA	NA	NA
09-2_par	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	64	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.357463767	2	0.9772153	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	97	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.751126397	1	0.9999159	TAT	synonymous	NA	NA	NA	NA
09-2_par	chr9	37746554	12A2p6	cell line	sgMsh2	37746554	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	289	0	0	NA	exonic	Olfr874	nonsynonymous SNV	Olfr874:NM_146882:exon1:c.A419G:p.Y140C	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.126696019	3	3.06E-08	TAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	200	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.968319572	1	1	GTA	synonymous	NA	NA	NA	NA
09-2_par	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	135	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.841623553	NA	NA	TAA	frameshift	A	5	AAAAA	-1
09-2_par	chr9	38047923	12A2p6	cell line	sgMsh2	38047923	T	G	SNV	Mutect2;Vardict	2	0.019	324	0	0	NA	exonic	Olfr884	nonsynonymous SNV	Olfr884:NM_001011798:exon1:c.T700G:p.S234A	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.085972298	3	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	172	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.651579525	1	0.9989341	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	287	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.696828103	1	7.45E-09	GTT	synonymous	NA	NA	NA	NA
09-2_par	chr9	38367998	12A2p6	cell line	sgMsh2	38367998	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	145	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.T451G:p.C151G,Olfr250:NM_207552:exon1:c.T451G:p.C151G"	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.253392037	2	0.6588803	TTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	168	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.855198127	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
09-2_par	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	217	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.149320308	3	0.9999722	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	38848498	12A2p6	cell line	sgMsh2	38848498	T	G	SNV	Mutect2;Vardict	2	0.027	262	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.T383G:p.L128R	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.122171161	3	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	38877330	12A2p6	cell line	sgMsh2	38877330	A	G	SNV	Mutect2;MuSe;Vardict	3	0.067	186	0	0	NA	exonic	Olfr926	synonymous SNV	Olfr926:NM_146815:exon1:c.A153G:p.Q51Q	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.303165473	2	0.9956616	AAC	synonymous	NA	NA	NA	NA
09-2_par	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	158	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.660629241	1	0.9991787	CCT	synonymous	NA	NA	NA	NA
09-2_par	chr9	39019292	12A2p6	cell line	sgMsh2	39019292	A	T	SNV	Mutect2;Vardict	2	0.018	290	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.T248A:p.V83E	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.081447441	3	1.04E-09	CAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	39144272	12A2p6	cell line	sgMsh2	39144272	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	333	0	0	NA	exonic	Olfr242;Olfr27	synonymous SNV	"Olfr242:NM_010974:exon1:c.A171T:p.T57T,Olfr27:NM_146829:exon2:c.A171T:p.T57T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.217193175	3	0.9922421	CAC	synonymous	NA	NA	NA	NA
09-2_par	chr9	39218042	12A2p6	cell line	sgMsh2	39218042	T	C	SNV	Mutect2;Vardict	2	0.023	270	0	0	NA	exonic	Olfr944	synonymous SNV	Olfr944:NM_146507:exon1:c.T684C:p.I228I	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.10407173	3	5.35E-09	TTC	synonymous	NA	NA	NA	NA
09-2_par	chr9	39237809	12A2p6	cell line	sgMsh2	39237809	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	298	0	0	NA	exonic	Olfr1537	nonsynonymous SNV	Olfr1537:NM_207665:exon1:c.T623C:p.L208P	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.239817464	3	0.7162123	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	231	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	2	1	1	1	CAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	39737496	12A2p6	cell line	sgMsh2	39737496	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	218	0	0	NA	exonic	Olfr150	nonsynonymous SNV	Olfr150:NM_146609:exon1:c.G680A:p.R227H	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.167419739	3	0.9998073	CGT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	39956432	12A2p6	cell line	sgMsh2	39956432	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	110	0	0	NA	exonic	Olfr976	nonsynonymous SNV	"Olfr976:NM_146367:exon1:c.T538C:p.Y180H,Olfr976:NM_001360353:exon2:c.T502C:p.Y168H"	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.212668317	3	0.845286	TAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	108	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.950220141	1	1.13E-09	CAG	synonymous	NA	NA	NA	NA
09-2_par	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Strelka2;Vardict	2	0.1889	180	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.854745641	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
09-2_par	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	49	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.941170425	1	0.9999576	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	44848628	12A2p6	cell line	sgMsh2	44848628	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	80	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.T1923G:p.I641M	9qA5.2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.416286919	2	0.9986089	GAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	92	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	1.28E-09	TGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	0.999996	GAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	131	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.180994312	3	0.9845344	GTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	54628565	12A2p6	cell line	sgMsh2	54628565	A	G	SNV	Mutect2;Vardict	2	0.057	94	0	0	NA	exonic	Acsbg1	synonymous SNV	Acsbg1:NM_053178:exon3:c.T285C:p.C95C	9qA5.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.257916895	2	0.67305	TAC	synonymous	NA	NA	NA	NA
09-2_par	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	883	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.153845166	3	1	AGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
09-2_par	chr9	57254252	12A2p6	cell line	sgMsh2	57254252	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	62	0	0	NA	exonic	1700017B05Rik	nonsynonymous SNV	1700017B05Rik:NM_028820:exon3:c.T2782G:p.L928V	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.457010639	2	0.9872793	AAG	nonsynonymous	GGCTT	10	GGCTTGGCTT	NA
09-2_par	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	68	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.737551823	NA	NA	TGG	frameshift	G	5	GGGGG	-1
09-2_par	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	99	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.466060355	2	0.9986001	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	97	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.733026966	1	0.9997704	GGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	126	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.352938909	2	0.9990047	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	64122175	12A2p6	cell line	sgMsh2	64122175	C	A	SNV	Mutect2;Vardict	2	0.055	71	0	0	NA	exonic	Lctl	nonsynonymous SNV	Lctl:NM_145835:exon6:c.C547A:p.L183I	9qC	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.24886718	2	7.43E-07	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	64911707	12A2p6	cell line	sgMsh2	64911707	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	108	0	0	NA	exonic	Dennd4a	nonsynonymous SNV	Dennd4a:NM_001162917:exon31:c.A5143C:p.I1715L	9qC	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.257916895	2	0.6889299	AAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999998	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	61	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	2	1	1	0.9999995	GCT	synonymous	NA	NA	NA	NA
09-2_par	chr9	75146922	12A2p6	cell line	sgMsh2	75146922	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	107	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon10:c.A1111G:p.M371V	9qD	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9732416	GAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	75532550	12A2p6	cell line	sgMsh2	75532550	A	G	SNV	Mutect2;Vardict	2	0.052	96	0	0	NA	exonic	Tmod3	nonsynonymous SNV	Tmod3:NM_016963:exon2:c.T2C:p.M1T	9qD	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.235292606	3	0.5890527	CAT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	134	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	1.00E-09	TTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	121	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.628955236	1	0.9624568	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2045	44	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.925333423	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
09-2_par	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	65	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	1	0.9999998	TAG	synonymous	NA	NA	NA	NA
09-2_par	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	70	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.954744998	1	0.9999997	GAA	nonsynonymous	T	5	TTTTT	NA
09-2_par	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.1228	114	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.555652539	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
09-2_par	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	50	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.714927534	NA	NA	CAA	frameshift	A	5	AAAAA	-1
09-2_par	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	130	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.954744998	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	107525389	12A2p6	cell line	sgMsh2	107525389	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	139	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174048:exon29:c.A2555G:p.K852R,Cacna2d2:NM_001174049:exon29:c.A2555G:p.K852R,Cacna2d2:NM_001174050:exon29:c.A2555G:p.K852R,Cacna2d2:NM_001174047:exon30:c.A2576G:p.K859R,Cacna2d2:NM_020263:exon30:c.A2576G:p.K859R"	9qF1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.176469455	3	0.9913172	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	107978901	12A2p6	cell line	sgMsh2	107978901	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	175	0	0	NA	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon13:c.C1474A:p.P492T	9qF1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.158370023	3	0.9995086	CCC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	88	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.660629241	1	0.981162	CTC	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	63	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
09-2_par	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	82	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.97284443	1	1.18E-08	GTG	synonymous	NA	NA	NA	NA
09-2_par	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	88	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.90949642	1	0.9999999	GCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	119694115	12A2p6	cell line	sgMsh2	119694115	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.096	53	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon2:c.C211T:p.P71S,Scn10a:NM_009134:exon2:c.C211T:p.P71S"	9qF3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.43438635	2	0.9835834	GGG	nonsynonymous	NA	NA	NA	NA
09-2_par	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	50	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.981894145	1	0.9999892	CCC	synonymous	NA	NA	NA	NA
09-2_par	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	99	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.94	4.253366344	NA	1	0.488684644	2	0.9950198	GAT	synonymous	NA	NA	NA	NA
09-2_par	chrX	8685377	12A2p6	cell line	sgMsh2	8685377	T	C	SNV	Mutect2;MuSe;Vardict	3	0.07	251	0	0	NA	exonic	Ssxb8	nonsynonymous SNV	Ssxb8:NM_001081565:exon6:c.A467G:p.Y156C	XqA1.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	9063657	12A2p6	cell line	sgMsh2	9063657	A	G	SNV	Mutect2;Vardict	2	0.058	148	0	0	NA	exonic	Fthl17f	nonsynonymous SNV	Fthl17f:NM_001038697:exon1:c.A491G:p.N164S	XqA1.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	97	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	12608928	12A2p6	cell line	sgMsh2	12608928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	52	0	0	NA	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon8:c.A835G:p.R279G	XqA1.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	25549055	12A2p6	cell line	sgMsh2	25549055	T	C	SNV	Mutect2;Vardict	2	0.037	205	0	0	NA	exonic	Gm1993	synonymous SNV	Gm1993:NM_001102677:exon8:c.A525G:p.R175R	XqA2	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTC	synonymous	GTCT	8	GTCTGTCT	NA
09-2_par	chrX	42520656	12A2p6	cell line	sgMsh2	42520656	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	47	0	0	NA	exonic	Sh2d1a	nonsynonymous SNV	"Sh2d1a:NM_001313689:exon3:c.T206C:p.V69A,Sh2d1a:NM_001313691:exon3:c.T80C:p.V27A,Sh2d1a:NM_011364:exon3:c.T215C:p.V72A,Sh2d1a:NM_001313688:exon4:c.T269C:p.V90A"	XqA4	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	48135754	12A2p6	cell line	sgMsh2	48135754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	70	0	0	NA	exonic	Xpnpep2	nonsynonymous SNV	"Xpnpep2:NM_001289729:exon21:c.A2051G:p.Y684C,Xpnpep2:NM_133213:exon21:c.A1850G:p.Y617C"	XqA5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	53751521	12A2p6	cell line	sgMsh2	53751521	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	53	0	0	NA	exonic	1700013H16Rik	nonsynonymous SNV	1700013H16Rik:NM_001200013:exon2:c.A323C:p.Q108P	XqA5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	53774236	12A2p6	cell line	sgMsh2	53774236	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	48	0	0	NA	exonic	Zfp36l3	synonymous SNV	Zfp36l3:NM_001009549:exon1:c.C2010T:p.D670D	XqA5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CGT	synonymous	NA	NA	NA	NA
09-2_par	chrX	59250947	12A2p6	cell line	sgMsh2	59250947	-	G	Insertion	Strelka2;Vardict	2	0.1714	35	0	0	NA	exonic	Fgf13	frameshift insertion	Fgf13:NM_001290414:exon3:c.68dupC:p.G24Wfs*27	XqA6	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
09-2_par	chrX	60261735	12A2p6	cell line	sgMsh2	60261735	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	36	0	0	NA	exonic	Atp11c	nonsynonymous SNV	"Atp11c:NM_001001798:exon21:c.A2411G:p.N804S,Atp11c:NM_001037863:exon21:c.A2411G:p.N804S,Atp11c:NM_001359002:exon21:c.A2411G:p.N804S"	XqA6	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	66655430	12A2p6	cell line	sgMsh2	66655430	A	G	SNV	Mutect2;Vardict	2	0.077	53	0	0	NA	exonic	Slitrk2	nonsynonymous SNV	"Slitrk2:NM_198863:exon2:c.A1526G:p.H509R,Slitrk2:NM_001161431:exon3:c.A1526G:p.H509R"	XqA7.1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAC	nonsynonymous	CCTG	8	CCTGCCTG	NA
09-2_par	chrX	72262501	12A2p6	cell line	sgMsh2	72262501	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	46	0	0	NA	exonic	Gabre	stopgain	Gabre:NM_017369:exon6:c.T1961A:p.L654X	XqA7.3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CAA	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	41	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	73779619	12A2p6	cell line	sgMsh2	73779619	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	92	0	0	NA	exonic	Idh3g	synonymous SNV	"Idh3g:NM_001356356:exon10:c.C1002T:p.H334H,Idh3g:NM_008323:exon11:c.C1014T:p.H338H"	XqA7.3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GGT	synonymous	NA	NA	NA	NA
09-2_par	chrX	73794680	12A2p6	cell line	sgMsh2	73794680	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	74	0	0	NA	exonic	Pdzd4	nonsynonymous SNV	"Pdzd4:NM_001290540:exon6:c.A1676G:p.K559R,Pdzd4:NM_001029868:exon8:c.A2021G:p.K674R"	XqA7.3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	75	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
09-2_par	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	42	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.122	40	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
09-2_par	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	70	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	94202894	12A2p6	cell line	sgMsh2	94202894	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.153	26	0	0	NA	exonic	Eif2s3x	nonsynonymous SNV	Eif2s3x:NM_012010:exon7:c.A692G:p.N231S	XqC3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	21	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	54	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	101288428	12A2p6	cell line	sgMsh2	101288428	A	-	Deletion	Strelka2;Vardict	2	0.0784	51	0	0	NA	exonic	Med12	frameshift deletion	Med12:NM_021521:exon31:c.4335delA:p.A1447Lfs*30	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAA	frameshift	NA	NA	NA	-1
09-2_par	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	84	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
09-2_par	chrX	103185204	12A2p6	cell line	sgMsh2	103185204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	87	0	0	NA	exonic	Nap1l2	synonymous SNV	Nap1l2:NM_008671:exon1:c.T1107C:p.S369S	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAG	synonymous	AAGA	8	AAGAAAGA	NA
09-2_par	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	65	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
09-2_par	chrX	120400798	12A2p6	cell line	sgMsh2	120400798	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	81	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.A1937C:p.E646A,Pcdh11x:NM_001271810:exon3:c.A1937C:p.E646A"	XqE2	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	126814960	12A2p6	cell line	sgMsh2	126814960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	76	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.G521A:p.R174K	XqE3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	127063401	12A2p6	cell line	sgMsh2	127063401	A	G	SNV	Mutect2;Vardict	2	0.063	64	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.A3208G:p.T1070A	XqE3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	50	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
09-2_par	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	34	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	134721417	12A2p6	cell line	sgMsh2	134721417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	48	0	0	NA	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.T1267C:p.L423L,Armcx1:NM_001166379:exon4:c.T1267C:p.L423L,Armcx1:NM_001166380:exon5:c.T1267C:p.L423L,Armcx1:NM_001166377:exon6:c.T1267C:p.L423L,Armcx1:NM_030066:exon6:c.T1267C:p.L423L"	XqE3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
09-2_par	chrX	150987854	12A2p6	cell line	sgMsh2	150987854	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.113	44	0	0	NA	exonic	Gnl3l	synonymous SNV	"Gnl3l:NM_001168600:exon15:c.T1636C:p.L546L,Gnl3l:NM_198110:exon15:c.T1636C:p.L546L"	XqF3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAT	synonymous	T	5	TTTTT	NA
09-2_par	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	53	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	155054380	12A2p6	cell line	sgMsh2	155054380	A	G	SNV	Mutect2;Vardict	2	0.026	200	0	0	NA	exonic	Magea5	synonymous SNV	Magea5:NM_020018:exon3:c.T15C:p.H5H	XqF3	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
09-2_par	chrX	164090311	12A2p6	cell line	sgMsh2	164090311	C	T	SNV	Mutect2;Vardict	2	0.062	66	0	0	NA	exonic	Cltrn	synonymous SNV	Cltrn:NM_020626:exon1:c.C39T:p.H13H	XqF5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	ACG	synonymous	NA	NA	NA	NA
09-2_par	chrX	166400997	12A2p6	cell line	sgMsh2	166400997	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	44	0	0	NA	exonic	Ofd1	nonsynonymous SNV	Ofd1:NM_177429:exon19:c.A2564G:p.H855R	XqF5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
09-2_par	chrX	167497819	12A2p6	cell line	sgMsh2	167497819	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	74	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001290428:exon10:c.A944G:p.Y315C,Frmpd4:NM_001359072:exon10:c.A1055G:p.Y352C,Frmpd4:NM_001368936:exon10:c.A1064G:p.Y355C,Frmpd4:NM_001290427:exon11:c.A1040G:p.Y347C,Frmpd4:NM_001369234:exon12:c.A1118G:p.Y373C,Frmpd4:NM_001033330:exon13:c.A1040G:p.Y347C"	XqF5	NA	NA	NA	NA	0.94	4.253366344	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
13-1_par	chr10	79950897	12A2p6	cell line	sgTom	79950897	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	49	0	0	NA	exonic	Arid3a	nonsynonymous SNV	"Arid3a:NM_001288625:exon7:c.C1483G:p.P495A,Arid3a:NM_001288626:exon7:c.C1477G:p.P493A,Arid3a:NM_007880:exon7:c.C1483G:p.P495A"	10qC1	chr10-3120209-129526639	2	1	1	0.9	2.501351863	NA	1	0.302941503	2	0.8788105	GCC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr10	127515430	12A2p6	cell line	sgTom	127515430	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	122	0	0	NA	exonic	Ndufa4l2	nonsynonymous SNV	Ndufa4l2:NM_001098789:exon2:c.G89C:p.G30A	10qD3	chr10-3120209-129526639	2	1	1	0.9	2.501351863	NA	1	0.244576627	2	0.8035605	GGC	nonsynonymous	TGGGCA	12	TGGGCATGGGCA	NA
13-1_par	chr11	69967052	12A2p6	cell line	sgTom	69967052	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	55	0	0	NA	exonic	Cldn7	nonsynonymous SNV	"Cldn7:NM_016887:exon2:c.C333G:p.D111E,Cldn7:NM_001193619:exon3:c.C333G:p.D111E"	11qB3	chr11-69590981-82929860	2	2	0	0.9	2.501351863	NA	1	0.54473885	2	0.9876015	ACA	nonsynonymous	NA	NA	NA	NA
13-1_par	chr11	78751006	12A2p6	cell line	sgTom	78751011	CCAAGG	-	Deletion	Strelka2;Vardict	2	0.1964	56	0	0	NA	exonic	Ccnq	nonframeshift deletion	Ccnq:NM_197989:exon1:c.652_657del:p.P218_W219del	11qB5	chr11-69590981-82929860	2	2	0	0.9	2.501351863	NA	1	0.545850562	NA	NA	ACC	inframe	NA	NA	NA	-6
13-1_par	chr16	31989805	12A2p6	cell line	sgTom	31989809	AATCA	-	Deletion	Mutect2;Vardict	2	0.034	155	0	0	NA	exonic	Senp5	frameshift deletion	"Senp5:NM_001357087:exon2:c.626_630del:p.L209Pfs*6,Senp5:NM_001357088:exon2:c.626_630del:p.L209Pfs*6,Senp5:NM_177103:exon2:c.626_630del:p.L209Pfs*6"	16qB2	chr16-4630421-36218094	3	2	1	0.9	2.501351863	NA	1	0.094495515	NA	NA	GAA	frameshift	NA	NA	NA	-5
13-1_par	chr2	52256734	12A2p6	cell line	sgTom	52256734	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.58	348	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon61:c.C8517A:p.S2839R	2qC1.1	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	2	1	1	1	TGC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr2	71826570	12A2p6	cell line	sgTom	71826570	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	125	0	0	NA	exonic	Itga6	synonymous SNV	"Itga6:NM_001277970:exon7:c.A1167G:p.Q389Q,Itga6:NM_008397:exon7:c.A1167G:p.Q389Q"	2qC3	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.208445989	3	0.5509913	AAG	synonymous	NA	NA	NA	NA
13-1_par	chr2	87071275	12A2p6	cell line	sgTom	87071275	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	172	0	0	NA	exonic	Olfr1107	nonsynonymous SNV	Olfr1107:NM_146844:exon1:c.T858A:p.N286K	2qD	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.319617183	2	0.9983237	GAT	nonsynonymous	NA	NA	NA	NA
13-1_par	chr2	88006762	12A2p6	cell line	sgTom	88006762	T	G	SNV	Mutect2;MuSe;Vardict	3	0.064	171	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A15C:p.K5N	2qD	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.17787391	3	0.9171534	ATT	nonsynonymous	NA	NA	NA	NA
13-1_par	chr2	89282773	12A2p6	cell line	sgTom	89282773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	279	0	0	NA	exonic	Olfr1229	nonsynonymous SNV	Olfr1229:NM_001011761:exon1:c.A359G:p.D120G	2qE1	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.255693746	2	0.9712918	GTC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr2	111564614	12A2p6	cell line	sgTom	111564614	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	186	0	0	NA	exonic	Olfr1295	nonsynonymous SNV	Olfr1295:NM_146403:exon1:c.G829A:p.V277I	2qE3	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.316837903	2	0.9987342	ACA	nonsynonymous	NA	NA	NA	NA
13-1_par	chr2	143968511	12A2p6	cell line	sgTom	143968519	ACTTACTTG	-	Deletion	Mutect2;Vardict	2	0.051	83	0	0	NA	exonic	Rrbp1	nonframeshift deletion	Rrbp1:NM_024281:exon6:c.2640_2642del:p.S880_K881delinsR	2qG1	chr2-18997554-181807525	3	2	1	0.9	2.501351863	NA	1	0.141743272	NA	NA	TAC	inframe	CTTA	11	CTTACTTACTT	-9
13-1_par	chr3	59329710	12A2p6	cell line	sgTom	59329710	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	145	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.A3049C:p.I1017L	3qD	chr3-10012637-159913826	3	2	1	0.9	2.501351863	NA	1	0.277927985	2	0.9644913	ATA	nonsynonymous	NA	NA	NA	NA
13-1_par	chr3	87974802	12A2p6	cell line	sgTom	87974802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	34	0	0	NA	exonic	Nes	synonymous SNV	Nes:NM_016701:exon3:c.G912A:p.R304R	3qF1	chr3-10012637-159913826	3	2	1	0.9	2.501351863	NA	1	1	1	0.9999096	GGA	synonymous	NA	NA	NA	NA
13-1_par	chr3	129218553	12A2p6	cell line	sgTom	129218553	C	A	SNV	Mutect2;Strelka2	2	0.049	172	0	0	NA	exonic	Pitx2	nonsynonymous SNV	"Pitx2:NM_001042502:exon3:c.C631A:p.P211T,Pitx2:NM_001287048:exon3:c.C529A:p.P177T,Pitx2:NM_001042504:exon4:c.C472A:p.P158T,Pitx2:NM_001286942:exon5:c.C571A:p.P191T,Pitx2:NM_011098:exon5:c.C610A:p.P204T"	3qG3	chr3-10012637-159913826	3	2	1	0.9	2.501351863	NA	1	0.136184713	3	0.9933976	TCC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr5	112355037	12A2p6	cell line	sgTom	112355037	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	93	0	0	NA	exonic	Gm6583	nonsynonymous SNV	Gm6583:NM_001039228:exon1:c.A800G:p.K267R	5qF	chr5-110099887-151647482	2	1	1	0.9	2.501351863	NA	1	0.150081112	3	0.875527	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
13-1_par	chr6	72601549	12A2p6	cell line	sgTom	72601549	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	209	0	0	NA	exonic	Retsat	nonsynonymous SNV	Retsat:NM_026159:exon3:c.A426C:p.Q142H	6qC1	chr6-3373003-148425959	3	2	1	0.9	2.501351863	NA	1	0.083378395	3	0.9999635	AAC	nonsynonymous	ACTGG	10	ACTGGACTGG	NA
13-1_par	chr6	134423778	12A2p6	cell line	sgTom	134423778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	77	0	0	NA	exonic	Bcl2l14	nonsynonymous SNV	"Bcl2l14:NM_001355686:exon2:c.C161T:p.S54F,Bcl2l14:NM_025778:exon3:c.C161T:p.S54F"	6qG1	chr6-3373003-148425959	3	2	1	0.9	2.501351863	NA	1	0.36964422	2	0.009902009	TCC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr6	134423831	12A2p6	cell line	sgTom	134423831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	83	0	0	NA	exonic	Bcl2l14	nonsynonymous SNV	"Bcl2l14:NM_001355686:exon2:c.C214T:p.P72S,Bcl2l14:NM_025778:exon3:c.C214T:p.P72S"	6qG1	chr6-3373003-148425959	3	2	1	0.9	2.501351863	NA	1	0.566973089	2	0.9866085	GCC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr6	145427339	12A2p6	cell line	sgTom	145427339	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	116	0	0	NA	exonic	Lmntd1	nonsynonymous SNV	Lmntd1:NM_028742:exon5:c.C467G:p.A156G	6qG3	chr6-3373003-148425959	3	2	1	0.9	2.501351863	NA	1	0.322396462	2	0.9903723	GGC	nonsynonymous	NA	NA	NA	NA
13-1_par	chr7	47083149	12A2p6	cell line	sgTom	47083149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	78	0	0	NA	exonic	Ptpn5	synonymous SNV	"Ptpn5:NM_001163565:exon9:c.A945G:p.V315V,Ptpn5:NM_013643:exon9:c.A945G:p.V315V"	7qB3	chr7-10175819-145323643	2	1	1	0.9	2.501351863	NA	1	0.319617183	2	0.9625384	GTA	synonymous	NA	NA	NA	NA
13-1_par	chr9	38219191	12A2p6	cell line	sgTom	38219191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	185	0	0	NA	exonic	Olfr894	nonsynonymous SNV	Olfr894:NM_146868:exon1:c.T367C:p.Y123H	9qA5.1	chr9-3190647-124127055	2	1	1	0.9	2.501351863	NA	1	0.202887429	3	0.727279	CTA	nonsynonymous	NA	NA	NA	NA
13-1_par	chrX	21734088	12A2p6	cell line	sgTom	21734088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	51	0	0	NA	exonic	Slc6a14	synonymous SNV	Slc6a14:NM_020049:exon9:c.T1243C:p.L415L	XqA2	NA	NA	NA	NA	0.9	2.501351863	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
19-1_par	chr1	80515600	12A2p6	cell line	sgTom	80515600	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	67	0	0	NA	exonic	Dock10	synonymous SNV	"Dock10:NM_001285927:exon51:c.C5655A:p.I1885I,Dock10:NM_175291:exon51:c.C5691A:p.I1897I"	1qC5	chr1-3216742-195166209	5	3	2	0.9	5.402097117	RARE KARYOTYPE	2	1	1	0.9991991	AGA	synonymous	NA	NA	NA	NA
19-1_par	chr10	23971139	12A2p6	cell line	sgTom	23971139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	145	0	0	NA	exonic	Taar5	nonsynonymous SNV	Taar5:NM_001009574:exon1:c.A434G:p.K145R	10qA4	chr10-3120209-129526639	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr10	111490036	12A2p6	cell line	sgTom	111490036	A	C	SNV	Mutect2;MuSe;Vardict	3	0.081	279	0	0	NA	exonic	Nap1l1	nonsynonymous SNV	"Nap1l1:NM_001358932:exon3:c.A26C:p.K9T,Nap1l1:NM_015781:exon5:c.A215C:p.K72T"	10qD1	chr10-3120209-129526639	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.486188741	2	0.9650126	AAG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr10	111492949	12A2p6	cell line	sgTom	111492949	T	C	SNV	Mutect2;Vardict	2	0.056	176	0	0	NA	exonic	Nap1l1	synonymous SNV	"Nap1l1:NM_001358932:exon7:c.T549C:p.S183S,Nap1l1:NM_015781:exon9:c.T738C:p.S246S"	10qD1	chr10-3120209-129526639	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.336130487	3	0.9997269	CTT	synonymous	CTTTT	10	CTTTTCTTTT	NA
19-1_par	chr10	111492956	12A2p6	cell line	sgTom	111492956	G	A	SNV	Mutect2;Vardict	2	0.052	171	0	0	NA	exonic	Nap1l1	nonsynonymous SNV	"Nap1l1:NM_001358932:exon7:c.G556A:p.G186R,Nap1l1:NM_015781:exon9:c.G745A:p.G249R"	10qD1	chr10-3120209-129526639	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.312121167	3	0.9999296	CGG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr11	9290998	12A2p6	cell line	sgTom	9290998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.57	228	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon17:c.A2860C:p.N954H	11qA1	chr11-3133133-69579350	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	1	1.36E-09	AAA	nonsynonymous	NA	NA	NA	NA
19-1_par	chr11	33161186	12A2p6	cell line	sgTom	33161186	C	T	SNV	Mutect2;Vardict	2	0.054	171	0	0	NA	exonic	Npm1	nonsynonymous SNV	"Npm1:NM_001252260:exon3:c.G139A:p.V47I,Npm1:NM_001252261:exon3:c.G178A:p.V60I,Npm1:NM_008722:exon3:c.G178A:p.V60I"	11qA4	chr11-3133133-69579350	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.324125827	3	0.9998451	ACG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr12	53142632	12A2p6	cell line	sgTom	53142632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	93	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.A6828G:p.K2276K	12qC1	chr12-3501831-119465464	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	1	1	0.9999244	AAG	synonymous	AAGGC	10	AAGGCAAGGC	NA
19-1_par	chr12	104151904	12A2p6	cell line	sgTom	104151904	G	C	SNV	Mutect2;Vardict	2	0.034	496	0	0	NA	exonic	Serpina3c	synonymous SNV	Serpina3c:NM_008458:exon2:c.C174G:p.L58L	12qE	chr12-3501831-119465464	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.204079224	3	1	AGA	synonymous	NA	NA	NA	NA
19-1_par	chr13	17452495	12A2p6	cell line	sgTom	17452495	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	145	0	0	NA	exonic	Sugct	nonsynonymous SNV	Sugct:NM_138654:exon9:c.C772T:p.R258C	13qA2	chr13-3556297-119495179	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	1	0.9999993	CGT	nonsynonymous	NA	NA	NA	NA
19-1_par	chr13	55381076	12A2p6	cell line	sgTom	55381076	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	36	0	0	NA	exonic	Rgs14	synonymous SNV	"Rgs14:NM_001360714:exon9:c.T1029C:p.I343I,Rgs14:NM_016758:exon9:c.T1029C:p.I343I"	13qB1	chr13-3556297-119495179	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.618240003	2	0.7304021	TTA	synonymous	NA	NA	NA	NA
19-1_par	chr13	63540765	12A2p6	cell line	sgTom	63540765	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	52	0	0	NA	exonic	Ptch1	nonsynonymous SNV	"Ptch1:NM_001328514:exon10:c.G1222A:p.V408I,Ptch1:NM_008957:exon10:c.G1378A:p.V460I"	13qB3	chr13-3556297-119495179	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	1	1	0.9968802	ACG	nonsynonymous	GCCA	11	GCCAGCCAGCC	NA
19-1_par	chr14	21840457	12A2p6	cell line	sgTom	21840457	A	T	SNV	Mutect2;Vardict	2	0.054	139	0	0	NA	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon8:c.A626T:p.K209I	14qA3	chr14-7006943-53105629	5.39194993	5.39194993	0	0.9	5.402097117	RARE KARYOTYPE	1	0.324125827	3	0.9992624	AAA	nonsynonymous	NA	NA	NA	NA
19-1_par	chr14	21840543	12A2p6	cell line	sgTom	21840544	CA	TG	DBS	Mutect2;Vardict	2	0.04	238	0	0	NA	exonic	Vdac2	nonframeshift substitution	Vdac2:NM_011695:exon8:c.712_713TG:p.Q238W	14qA3	chr14-7006943-53105629	5.39194993	5.39194993	0	0.9	5.402097117	RARE KARYOTYPE	1	0.240093205	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
19-1_par	chr15	74839278	12A2p6	cell line	sgTom	74839278	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	152	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon3:c.G550A:p.G184S	15qD3	chr15-3279130-102454328	7	4	3	0.9	5.402097117	RARE KARYOTYPE	1	0.330128157	3	0.9994447	CCA	nonsynonymous	NA	NA	NA	NA
19-1_par	chr15	76537953	12A2p6	cell line	sgTom	76537953	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	127	0	0	NA	exonic	Fbxl6	nonsynonymous SNV	Fbxl6:NM_013909:exon2:c.A515C:p.K172T	15qD3	chr15-3279130-102454328	7	4	3	0.9	5.402097117	RARE KARYOTYPE	1	0.546212042	2	0.9852477	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
19-1_par	chr15	82062319	12A2p6	cell line	sgTom	82062319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	139	0	0	NA	exonic	4930407I10Rik	nonsynonymous SNV	4930407I10Rik:NM_001166475:exon2:c.A416G:p.D139G	15qE1	chr15-3279130-102454328	7	4	3	0.9	5.402097117	RARE KARYOTYPE	4	1	1	0.9999988	GAC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr16	12267574	12A2p6	cell line	sgTom	12267574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	66	0	0	NA	exonic	Shisa9	nonsynonymous SNV	"Shisa9:NM_001174086:exon4:c.A998G:p.K333R,Shisa9:NM_028277:exon5:c.A1046G:p.K349R"	16qA1	chr16-4630421-97886207	5	3	2	0.9	5.402097117	RARE KARYOTYPE	2	1	1	0.9991231	AAG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr17	37231898	12A2p6	cell line	sgTom	37231898	A	G	SNV	Mutect2;MuSe;Vardict	3	0.062	214	0	0	NA	exonic	Olfr97	synonymous SNV	Olfr97:NM_146512:exon1:c.T471C:p.H157H	17qB1	chr17-8169318-94740433	6	4	2	0.9	5.402097117	RARE KARYOTYPE	1	0.372144468	3	0.9990183	TAT	synonymous	NA	NA	NA	NA
19-1_par	chr17	90565377	12A2p6	cell line	sgTom	90565377	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	127	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon13:c.T3121C:p.L1041L,Nrxn1:NM_177284:exon14:c.T3136C:p.L1046L,Nrxn1:NM_020252:exon16:c.T3172C:p.L1058L"	17qE5	chr17-8169318-94740433	6	4	2	0.9	5.402097117	RARE KARYOTYPE	1	0.414160779	3	0.09653664	AAG	synonymous	NA	NA	NA	NA
19-1_par	chr19	5380294	12A2p6	cell line	sgTom	5380294	T	G	SNV	Mutect2;Strelka2	2	0.059	59	0	0	NA	exonic	Sart1	synonymous SNV	Sart1:NM_016882:exon19:c.A2328C:p.A776A	19qA	NA	NA	NA	NA	0.9	5.402097117	RARE KARYOTYPE	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
19-1_par	chr19	46859027	12A2p6	cell line	sgTom	46859027	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	132	0	0	NA	exonic	Cnnm2	nonsynonymous SNV	"Cnnm2:NM_001102471:exon4:c.A1988C:p.K663T,Cnnm2:NM_033569:exon4:c.A1988C:p.K663T"	19qC3	chr19-6054831-61227351	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	1	1	0.9999978	AAG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr2	32926827	12A2p6	cell line	sgTom	32926827	T	C	SNV	Mutect2;Strelka2	2	0.142	36	0	0	NA	exonic	Lrsam1	synonymous SNV	"Lrsam1:NM_001379443:exon24:c.A1995G:p.P665P,Lrsam1:NM_001379440:exon25:c.A2133G:p.P711P,Lrsam1:NM_001379441:exon25:c.A2076G:p.P692P,Lrsam1:NM_001379442:exon25:c.A2052G:p.P684P,Lrsam1:NM_001379439:exon26:c.A2133G:p.P711P,Lrsam1:NM_199302:exon26:c.A2133G:p.P711P"	2qB	chr2-3197272-76814467	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.852330878	1	0.8856331	GTG	synonymous	NA	NA	NA	NA
19-1_par	chr2	86754001	12A2p6	cell line	sgTom	86754001	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.599	111	0	0	NA	exonic	Olfr1090	nonsynonymous SNV	Olfr1090:NM_146847:exon1:c.A736C:p.T246P	2qD	chr2-76867311-181807525	6	3	3	0.9	5.402097117	RARE KARYOTYPE	3	1	1	0.9999853	GTC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr2	118119181	12A2p6	cell line	sgTom	118119181	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	180	0	0	NA	exonic	Thbs1	nonsynonymous SNV	"Thbs1:NM_001313914:exon11:c.G1748T:p.G583V,Thbs1:NM_011580:exon11:c.G1751T:p.G584V"	2qE5	chr2-76867311-181807525	6	3	3	0.9	5.402097117	RARE KARYOTYPE	3	1	1	2.90E-08	GGC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr2	181206950	12A2p6	cell line	sgTom	181206950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	34	0	0	NA	exonic	Srms	synonymous SNV	Srms:NM_011481:exon6:c.T1096C:p.L366L	2qH4	chr2-76867311-181807525	6	3	3	0.9	5.402097117	RARE KARYOTYPE	3	1	1	0.984189	AAG	synonymous	NA	NA	NA	NA
19-1_par	chr3	73049824	12A2p6	cell line	sgTom	73049824	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	78	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.C1614G:p.N538K,Slitrk3:NM_198864:exon2:c.C1614G:p.N538K"	3qE3	chr3-10012637-159913826	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.666258644	2	0.947764	AGT	nonsynonymous	NA	NA	NA	NA
19-1_par	chr3	95502608	12A2p6	cell line	sgTom	95502608	C	T	SNV	Mutect2;Vardict	2	0.073	58	0	0	NA	exonic	Ctsk	synonymous SNV	Ctsk:NM_007802:exon5:c.C426T:p.F142F	3qF2.1	chr3-10012637-159913826	6	3	3	0.9	5.402097117	RARE KARYOTYPE	1	0.438170099	3	0.672616	TCA	synonymous	NA	NA	NA	NA
19-1_par	chr3	136213999	12A2p6	cell line	sgTom	136213999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	55	0	0	NA	exonic	Bank1	nonsynonymous SNV	"Bank1:NM_001310749:exon6:c.T635G:p.L212R,Bank1:NM_001033350:exon7:c.T1034G:p.L345R"	3qG3	chr3-10012637-159913826	6	3	3	0.9	5.402097117	RARE KARYOTYPE	2	1	1	0.9976224	AAG	nonsynonymous	NA	NA	NA	NA
19-1_par	chr4	46500121	12A2p6	cell line	sgTom	46500121	C	T	SNV	Mutect2;Vardict	2	0.051	72	0	0	NA	exonic	Nans	synonymous SNV	Nans:NM_053179:exon4:c.C504T:p.V168V	4qB1	chr4-3554421-60070040	4	2	2	0.9	5.402097117	RARE KARYOTYPE	1	0.306118837	3	0.9883488	TCT	synonymous	NA	NA	NA	NA
19-1_par	chr4	74280924	12A2p6	cell line	sgTom	74280924	T	C	SNV	Mutect2;Vardict	2	0.041	95	0	0	NA	exonic	Kdm4c	synonymous SNV	"Kdm4c:NM_001356561:exon3:c.T123C:p.Y41Y,Kdm4c:NM_001172095:exon4:c.T399C:p.Y133Y,Kdm4c:NM_144787:exon4:c.T348C:p.Y116Y"	4qC3	chr4-62051730-112851039	4	2	2	0.9	5.402097117	RARE KARYOTYPE	1	0.246095535	3	0.9996334	ATG	synonymous	NA	NA	NA	NA
19-1_par	chr4	149132288	12A2p6	cell line	sgTom	149132288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	78	0	0	NA	exonic	Cenps	nonsynonymous SNV	Cenps:NM_027263:exon2:c.C143A:p.A48E	4qE2	chr4-114231334-156223608	4	2	2	0.9	5.402097117	RARE KARYOTYPE	2	1	1	0.9997049	CGC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr5	109224526	12A2p6	cell line	sgTom	109224526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	269	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon1:c.A97C:p.K33Q,Vmn2r14:NM_001384975:exon1:c.A97C:p.K33Q"	5qF	chr5-87677374-145469914	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
19-1_par	chr6	43116465	12A2p6	cell line	sgTom	43116465	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	317	0	0	NA	exonic	Olfr441	nonsynonymous SNV	Olfr441:NM_146655:exon1:c.C722T:p.S241F	6qB2.1	chr6-3373003-148425959	6	6	0	0.9	5.402097117	RARE KARYOTYPE	1	1	1	1.00E-09	TCC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr7	3656889	12A2p6	cell line	sgTom	3656889	-	C	Insertion	Strelka2;Vardict	2	0.1455	55	0	0	NA	exonic	Cnot3	frameshift insertion	Cnot3:NM_146176:exon13:c.1504dupC:p.S504Qfs*6	7qA1	chr7-3489139-3716106	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.873339034	NA	NA	ATC	frameshift	C	5	CCCCC	1
19-1_par	chr7	12848568	12A2p6	cell line	sgTom	12848568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	109	0	0	NA	exonic	Zfp110	nonsynonymous SNV	"Zfp110:NM_001360576:exon8:c.A1142G:p.N381S,Zfp110:NM_022981:exon8:c.A1142G:p.N381S"	7qA1	chr7-8367627-104249043	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	1	0.9999823	AAT	nonsynonymous	AATCA	11	AATCAAATCAA	NA
19-1_par	chr7	42266471	12A2p6	cell line	sgTom	42266471	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	167	0	0	NA	exonic	Vmn2r61	synonymous SNV	Vmn2r61:NM_001105058:exon3:c.T507A:p.T169T	7qB3	chr7-8367627-104249043	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
19-1_par	chr7	104022127	12A2p6	cell line	sgTom	104022127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	268	0	0	NA	exonic	Olfr640	nonsynonymous SNV	Olfr640:NM_146822:exon1:c.T190A:p.F64I	7qE3	chr7-8367627-104249043	5	3	2	0.9	5.402097117	RARE KARYOTYPE	3	1	1	1.01E-09	AAA	nonsynonymous	NA	NA	NA	NA
19-1_par	chr7	110049625	12A2p6	cell line	sgTom	110049625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	307	0	0	NA	exonic	Ipo7	nonsynonymous SNV	"Ipo7:NM_001362172:exon19:c.A2104G:p.T702A,Ipo7:NM_181517:exon19:c.A2104G:p.T702A"	7qE3	chr7-104359414-145323643	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.366142138	3	0.9999712	AAC	nonsynonymous	NA	NA	NA	NA
19-1_par	chr9	55180527	12A2p6	cell line	sgTom	55180527	A	-	Deletion	Strelka2;Vardict	2	0.0326	184	0	0	NA	exonic	Ube2q2	frameshift deletion	"Ube2q2:NM_001346657:exon4:c.406delA:p.K137Sfs*14,Ube2q2:NM_001346658:exon5:c.142delA:p.K49Sfs*14,Ube2q2:NM_180600:exon5:c.511delA:p.K172Sfs*14"	9qB	chr9-4330518-124127055	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.195675962	NA	NA	GAA	frameshift	A	5	AAAAA	-1
19-1_par	chr9	100495521	12A2p6	cell line	sgTom	100495521	T	-	Deletion	Strelka2;Vardict	2	0.1467	225	0	0	NA	exonic	Nck1	frameshift deletion	"Nck1:NM_001324530:exon3:c.898delA:p.S300Vfs*20,Nck1:NM_010878:exon4:c.1090delA:p.S364Vfs*20"	9qE3.3	chr9-4330518-124127055	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.88054183	NA	NA	CTT	frameshift	NA	NA	NA	-1
19-1_par	chr9	100495538	12A2p6	cell line	sgTom	100495538	T	-	Deletion	Strelka2;Vardict	2	0.0891	202	0	0	NA	exonic	Nck1	frameshift deletion	"Nck1:NM_001324530:exon3:c.881delA:p.K294Rfs*26,Nck1:NM_010878:exon4:c.1073delA:p.K358Rfs*26"	9qE3.3	chr9-4330518-124127055	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.534807615	NA	NA	CTT	frameshift	T	5	TTTTT	-1
19-1_par	chr9	111392381	12A2p6	cell line	sgTom	111392381	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	97	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon20:c.T8185G:p.L2729V	9qF3	chr9-4330518-124127055	5	3	2	0.9	5.402097117	RARE KARYOTYPE	1	0.624242333	2	0.9940684	GTT	nonsynonymous	NA	NA	NA	NA
20-1_par	chr10	79035045	12A2p6	cell line	sgTom	79035045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	282	0	0	NA	exonic	Olfr57	nonsynonymous SNV	Olfr57:NM_147041:exon1:c.T248C:p.L83P	10qC1	chr10-3120209-129526639	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
20-1_par	chr10	86731107	12A2p6	cell line	sgTom	86731107	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	114	0	0	NA	exonic	Ttc41	nonsynonymous SNV	"Ttc41:NM_153595:exon5:c.C1636G:p.Q546E,Ttc41:NM_001003910:exon6:c.C1636G:p.Q546E"	10qC1	chr10-3120209-129526639	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	3	1	1	1.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr10	120075364	12A2p6	cell line	sgTom	120075364	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	132	0	0	NA	exonic	Grip1	synonymous SNV	"Grip1:NM_001277295:exon13:c.G1746C:p.L582L,Grip1:NM_130891:exon22:c.G2949C:p.L983L,Grip1:NM_133442:exon22:c.G2952C:p.L984L,Grip1:NM_001277292:exon23:c.G3033C:p.L1011L,Grip1:NM_001277294:exon23:c.G3030C:p.L1010L,Grip1:NM_001277293:exon24:c.G3189C:p.L1063L,Grip1:NM_001358809:exon24:c.G3078C:p.L1026L,Grip1:NM_001358811:exon24:c.G3321C:p.L1107L,Grip1:NM_001358810:exon25:c.G3402C:p.L1134L,Grip1:NM_028736:exon25:c.G3231C:p.L1077L"	10qD2	chr10-3120209-129526639	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.313920892	2	0.9432708	TGG	synonymous	NA	NA	NA	NA
20-1_par	chr10	128022955	12A2p6	cell line	sgTom	128022955	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	166	0	0	NA	exonic	Prim1	stopgain	Prim1:NM_008921:exon7:c.T731G:p.L244X	10qD3	chr10-3120209-129526639	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.323020048	2	0.9850078	TTA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr11	69106653	12A2p6	cell line	sgTom	69106653	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.555	8	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon19:c.C2653G:p.L885V,Per1:NM_011065:exon19:c.C2653G:p.L885V"	11qB3	chr11-3355458-69579350	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	0.9214997	ACT	nonsynonymous	NA	NA	NA	NA
20-1_par	chr11	97711127	12A2p6	cell line	sgTom	97711127	-	TCACTGCT	Insertion	Mutect2;Vardict	2	0.058	230	0	0	NA	exonic	Psmb3	frameshift insertion	Psmb3:NM_011971:exon4:c.322_323insTCACTGCT:p.I109Tfs*26	11qD	chr11-83346348-121956668	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.263875532	NA	NA	TGT	frameshift	NA	NA	NA	8
20-1_par	chr12	49385613	12A2p6	cell line	sgTom	49385613	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	32	0	0	NA	exonic	Foxg1	synonymous SNV	"Foxg1:NM_001160112:exon1:c.C1128A:p.L376L,Foxg1:NM_008241:exon2:c.C1128A:p.L376L"	12qB3	chr12-3501831-119465464	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.505003173	2	0.9311597	TCG	synonymous	NA	NA	NA	NA
20-1_par	chr13	34128897	12A2p6	cell line	sgTom	34128897	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	205	0	0	NA	exonic	Tubb2b	nonsynonymous SNV	Tubb2b:NM_023716:exon3:c.C252G:p.I84M	13qA3.3	chr13-3556297-119495179	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.227478907	3	0.9745575	AGA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr15	71837328	12A2p6	cell line	sgTom	71837328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	157	0	0	NA	exonic	Col22a1	synonymous SNV	Col22a1:NM_027174:exon50:c.A3678G:p.P1226P	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	3	1	1	1	CTG	synonymous	TACT	8	TACTTACT	NA
20-1_par	chr15	103473811	12A2p6	cell line	sgTom	103473811	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	153	0	0	NA	exonic	Nckap1l	stopgain	Nckap1l:NM_153505:exon15:c.G1432T:p.E478X	15qF3	NA	NA	NA	NA	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr16	31857939	12A2p6	cell line	sgTom	31857939	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	395	0	0	NA	exonic	Dlg1	nonsynonymous SNV	"Dlg1:NM_001252436:exon20:c.C2071T:p.H691Y,Dlg1:NM_001357281:exon20:c.C1918T:p.H640Y,Dlg1:NM_001252433:exon22:c.C2248T:p.H750Y,Dlg1:NM_001252434:exon22:c.C2185T:p.H729Y,Dlg1:NM_001252435:exon23:c.C2284T:p.H762Y,Dlg1:NM_001357282:exon23:c.C2206T:p.H736Y,Dlg1:NM_007862:exon23:c.C2350T:p.H784Y"	16qB2	chr16-4630421-97886207	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.209280594	3	0.999968	TCA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr17	37590267	12A2p6	cell line	sgTom	37590267	C	A	SNV	Mutect2;Vardict	2	0.047	567	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.G85T:p.V29L	17qB1	chr17-8169318-94740433	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.213830172	3	0.9999989	ACA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr17	37590345	12A2p6	cell line	sgTom	37590345	T	C	SNV	Mutect2;Vardict	2	0.061	224	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A7G:p.M3V	17qB1	chr17-8169318-94740433	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.277524266	2	0.7382284	ATT	nonsynonymous	NA	NA	NA	NA
20-1_par	chr18	7286767	12A2p6	cell line	sgTom	7286767	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	35	0	0	NA	exonic	Armc4	nonsynonymous SNV	Armc4:NM_001357492:exon5:c.G463A:p.D155N	18qA1	chr18-5046666-88869177	3	2	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	0.999878	TCG	nonsynonymous	NA	NA	NA	NA
20-1_par	chr19	24476964	12A2p6	cell line	sgTom	24476964	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	144	0	0	NA	exonic	Fam122a	synonymous SNV	Fam122a:NM_026520:exon1:c.G393C:p.P131P	19qB	chr19-6054831-61227351	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.168334391	3	0.9982569	TCG	synonymous	NA	NA	NA	NA
20-1_par	chr19	39812656	12A2p6	cell line	sgTom	39812656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	486	0	0	NA	exonic	Cyp2c40	nonsynonymous SNV	Cyp2c40:NM_010004:exon1:c.A67G:p.R23G	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	3	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
20-1_par	chr2	36869643	12A2p6	cell line	sgTom	36869643	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	190	0	0	NA	exonic	Olfr352	synonymous SNV	Olfr352:NM_146940:exon1:c.C76T:p.L26L	2qB	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.1455865	3	0.9999681	ACT	synonymous	NA	NA	NA	NA
20-1_par	chr2	36907280	12A2p6	cell line	sgTom	36907280	C	T	SNV	Mutect2;Vardict	2	0.034	182	0	0	NA	exonic	Olfr354	synonymous SNV	Olfr354:NM_146939:exon1:c.C333T:p.G111G	2qB	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.154685657	3	0.9998958	GCG	synonymous	NA	NA	NA	NA
20-1_par	chr2	83653366	12A2p6	cell line	sgTom	83653366	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	119	0	0	NA	exonic	Zc3h15	synonymous SNV	Zc3h15:NM_026934:exon2:c.T84G:p.T28T	2qD	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	3	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
20-1_par	chr2	180157909	12A2p6	cell line	sgTom	180157909	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	85	0	0	NA	exonic	Osbpl2	synonymous SNV	Osbpl2:NM_144500:exon12:c.C1218T:p.C406C	2qH4	chr2-3197272-181807525	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.263875532	3	0.5150538	GCC	synonymous	NA	NA	NA	NA
20-1_par	chr3	98428178	12A2p6	cell line	sgTom	98428178	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.333	10	0	0	NA	exonic	Zfp697	synonymous SNV	Zfp697:NM_172863:exon3:c.C1258T:p.L420L	3qF2.2	chr3-95830523-159913826	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	0.9513454	CCT	synonymous	NA	NA	NA	NA
20-1_par	chr4	76066262	12A2p6	cell line	sgTom	76066262	T	G	SNV	Mutect2;MuSe;Vardict	3	0.092	176	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon15:c.A2381C:p.D794A,Ptprd:NM_001368993:exon15:c.A2378C:p.D793A,Ptprd:NM_001352628:exon16:c.A2390C:p.D797A,Ptprd:NM_001352629:exon16:c.A2393C:p.D798A,Ptprd:NM_001352630:exon16:c.A2390C:p.D797A,Ptprd:NM_001368991:exon26:c.A2405C:p.D802A,Ptprd:NM_011211:exon26:c.A2408C:p.D803A"	4qC3	chr4-60155018-112716199	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.418561189	2	0.9999937	ATC	nonsynonymous	C	5	CCCCC	NA
20-1_par	chr4	101837303	12A2p6	cell line	sgTom	101837303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	68	0	0	NA	exonic	Pramel17	nonsynonymous SNV	Pramel17:NM_001033790:exon3:c.A382G:p.K128E	4qC6	chr4-60155018-112716199	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	4.50E-08	TTC	nonsynonymous	NA	NA	NA	NA
20-1_par	chr5	90526384	12A2p6	cell line	sgTom	90526384	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	166	0	0	NA	exonic	Afm	nonsynonymous SNV	Afm:NM_145146:exon7:c.T754A:p.F252I	5qE1	chr5-87677374-145469914	5	3	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
20-1_par	chr6	8175451	12A2p6	cell line	sgTom	8175451	A	G	SNV	Mutect2;Strelka2	2	0.037	132	0	0	NA	exonic	Col28a1	synonymous SNV	Col28a1:NM_001037865:exon3:c.T396C:p.F132F	6qA1	chr6-3373003-148425959	5	4	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	0.168334391	3	0.997018	AAA	synonymous	NA	NA	NA	NA
20-1_par	chr7	4122649	12A2p6	cell line	sgTom	4122650	TG	CC	DBS	Mutect2;Vardict	2	0.222	8	0	0	NA	exonic	Ttyh1	nonframeshift substitution	"Ttyh1:NM_001001454:exon2:c.299_300CC:p.V100A,Ttyh1:NM_001109765:exon2:c.299_300CC:p.V100A,Ttyh1:NM_021324:exon2:c.299_300CC:p.V100A"	7qA1	chr7-3896664-7552161	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	1	1	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
20-1_par	chr7	44542154	12A2p6	cell line	sgTom	44542154	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.779	21	0	0	NA	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon4:c.G407C:p.C136S	7qB3	chr7-26198811-104249043	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	3	1	1	0.996487	GCA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr7	141797892	12A2p6	cell line	sgTom	141797892	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	132	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon16:c.C1921A:p.Q641K	7qF5	chr7-104329818-145323643	4	3	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	1	1.00E-09	CCA	nonsynonymous	NA	NA	NA	NA
20-1_par	chr8	54585021	12A2p6	cell line	sgTom	54585021	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.693	271	0	0	NA	exonic	Asb5	nonsynonymous SNV	"Asb5:NM_001374794:exon5:c.A506C:p.D169A,Asb5:NM_001374795:exon5:c.A443C:p.D148A,Asb5:NM_029569:exon5:c.A578C:p.D193A"	8qB1.3	chr8-3154030-129027034	5	4	1	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	4	1	1	1	GAT	nonsynonymous	NA	NA	NA	NA
20-1_par	chr9	65346846	12A2p6	cell line	sgTom	65346847	AC	GA	DBS	Mutect2;Vardict	2	0.5	3	0	0	NA	exonic	Pdcd7	nonframeshift substitution	Pdcd7:NM_016688:exon1:c.705_706GA:p.A234A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	2	1	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
20-1_par	chrX	73729083	12A2p6	cell line	sgTom	73729083	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	76	0	0	NA	exonic	Abcd1	nonsynonymous SNV	Abcd1:NM_007435:exon3:c.C1181A:p.A394D	XqA7.3	NA	NA	NA	NA	0.99	4.504082356	RARE KARYOTYPE;POOR GOF (79.2%)	NA	NA	NA	NA	GCT	nonsynonymous	GCT	8	GCTGCTGC	NA
22-1_par	chr1	3216273	12A2p6	cell line	sgMsh2	3216273	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	203	0	0	NA	exonic	Xkr4	stopgain	Xkr4:NM_001011874:exon3:c.G1693T:p.G565X	1qA1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CCA	nonsynonymous	CATC	9	CATCCATCC	NA
22-1_par	chr1	5095650	12A2p6	cell line	sgMsh2	5095650	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	392	0	0	NA	exonic	Atp6v1h	stopgain	"Atp6v1h:NM_001310442:exon5:c.T342A:p.Y114X,Atp6v1h:NM_133826:exon5:c.T342A:p.Y114X"	1qA1	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	9745551	12A2p6	cell line	sgMsh2	9745551	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	368	0	0	NA	exonic	Vcpip1	nonsynonymous SNV	Vcpip1:NM_173443:exon1:c.A2606C:p.K869T	1qA2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.05E-09	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	9745557	12A2p6	cell line	sgMsh2	9745557	G	T	SNV	Mutect2;Vardict	2	0.022	354	0	0	NA	exonic	Vcpip1	nonsynonymous SNV	Vcpip1:NM_173443:exon1:c.C2600A:p.T867N	1qA2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.0959474	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	14183402	12A2p6	cell line	sgMsh2	14183402	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	48	0	0	NA	exonic	Eya1	nonsynonymous SNV	"Eya1:NM_001252192:exon14:c.C1352T:p.A451V,Eya1:NM_001310459:exon15:c.C1451T:p.A484V,Eya1:NM_010164:exon15:c.C1439T:p.A480V"	1qA3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.706521766	1	0.6750518	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	20239379	12A2p6	cell line	sgMsh2	20239379	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	203	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon53:c.A8344T:p.T2782S	1qA4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9922835	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	23844923	12A2p6	cell line	sgMsh2	23844923	A	-	Deletion	Mutect2;Vardict	2	0.048	208	0	0	NA	exonic	B3gat2	frameshift deletion	B3gat2:NM_172124:exon3:c.790delA:p.K264Sfs*14	1qA5	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	NA	NA	TAA	frameshift	NA	NA	NA	-1
22-1_par	chr1	26682263	12A2p6	cell line	sgMsh2	26682263	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	172	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.G3835T:p.G1279C	1qA5	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.999838	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	28776541	12A2p6	cell line	sgMsh2	28776541	C	T	SNV	Mutect2;Vardict	2	0.047	134	0	0	NA	exonic	Gm597	synonymous SNV	Gm597:NM_001013750:exon2:c.G2409A:p.Q803Q	1qA5	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.9934812	TCT	synonymous	NA	NA	NA	NA
22-1_par	chr1	34156854	12A2p6	cell line	sgMsh2	34156854	A	T	SNV	Mutect2;Vardict	2	0.026	237	0	0	NA	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon11:c.A1091T:p.K364I,Dst:NM_134448:exon11:c.A1091T:p.K364I,Dst:NM_001276764:exon14:c.A1625T:p.K542I"	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.33E-08	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	37261746	12A2p6	cell line	sgMsh2	37261746	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	152	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon6:c.G1546T:p.D516Y,Cnga3:NM_001282010:exon8:c.G1660T:p.D554Y"	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9993975	AGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	37947204	12A2p6	cell line	sgMsh2	37947204	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	140	0	0	NA	exonic	Lyg1	nonsynonymous SNV	Lyg1:NM_027111:exon5:c.A448G:p.T150A	1qB	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.6464195	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	44174314	12A2p6	cell line	sgMsh2	44174314	T	-	Deletion	Strelka2;Vardict	2	0.1746	63	0	0	NA	exonic	Ercc5	frameshift deletion	Ercc5:NM_011729:exon11:c.2469delT:p.F825Lfs*6	1qC1.1	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.761473458	NA	NA	ATT	frameshift	T	5	TTTTT	-1
22-1_par	chr1	46109271	12A2p6	cell line	sgMsh2	46109271	T	G	SNV	Mutect2;Vardict	2	0.046	131	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon8:c.T674G:p.F225C	1qC1.1	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9943975	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	55089191	12A2p6	cell line	sgMsh2	55089191	T	C	SNV	Mutect2;Vardict	2	0.057	209	0	0	NA	exonic	Hspe1	synonymous SNV	Hspe1:NM_008303:exon2:c.T144C:p.A48A	1qC1.2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9712675	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr1	55152729	12A2p6	cell line	sgMsh2	55152729	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	190	0	0	NA	exonic	Mob4	nonsynonymous SNV	"Mob4:NM_001310585:exon7:c.A538C:p.M180L,Mob4:NM_025283:exon8:c.A601C:p.M201L"	1qC1.2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9993289	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	58289985	12A2p6	cell line	sgMsh2	58289985	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	283	0	0	NA	exonic	Aox2	synonymous SNV	Aox2:NM_001008419:exon7:c.A588G:p.K196K	1qC1.3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8646109	AAA	synonymous	NA	NA	NA	NA
22-1_par	chr1	58497460	12A2p6	cell line	sgMsh2	58497460	A	G	SNV	Mutect2;Strelka2	2	0.078	75	0	0	NA	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon2:c.T100C:p.L34L,Orc2:NM_001271526:exon5:c.T244C:p.L82L,Orc2:NM_008765:exon5:c.T244C:p.L82L"	1qC1.3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.8185608	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr1	58497463	12A2p6	cell line	sgMsh2	58497463	A	G	SNV	Mutect2;Strelka2	2	0.085	68	0	0	NA	exonic	Orc2	nonsynonymous SNV	"Orc2:NM_001025378:exon2:c.T97C:p.S33P,Orc2:NM_001271526:exon5:c.T241C:p.S81P,Orc2:NM_008765:exon5:c.T241C:p.S81P"	1qC1.3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.09543519	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	62745506	12A2p6	cell line	sgMsh2	62745506	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	131	0	0	NA	exonic	Nrp2	synonymous SNV	"Nrp2:NM_001077403:exon5:c.A813T:p.P271P,Nrp2:NM_001077404:exon5:c.A813T:p.P271P,Nrp2:NM_001077405:exon5:c.A813T:p.P271P,Nrp2:NM_001077406:exon5:c.A813T:p.P271P,Nrp2:NM_001077407:exon5:c.A813T:p.P271P,Nrp2:NM_010939:exon5:c.A813T:p.P271P"	1qC2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9150531	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr1	64735810	12A2p6	cell line	sgMsh2	64735810	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	172	0	0	NA	exonic	Fzd5	nonsynonymous SNV	"Fzd5:NM_001042659:exon2:c.T791A:p.F264Y,Fzd5:NM_022721:exon2:c.T791A:p.F264Y"	1qC2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9336179	GAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	65080386	12A2p6	cell line	sgMsh2	65080386	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	55	0	0	NA	exonic	Crygb	nonsynonymous SNV	Crygb:NM_144761:exon3:c.A434G:p.Y145C	1qC2	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	9.45E-05	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	68075527	12A2p6	cell line	sgMsh2	68075527	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	158	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon23:c.G2757T:p.K919N	1qC3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.540794438	2	0.9998412	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	71030647	12A2p6	cell line	sgMsh2	71030647	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	200	0	0	NA	exonic	Bard1	nonsynonymous SNV	Bard1:NM_007525:exon11:c.A2171G:p.Y724C	1qC3	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.9993096	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	75197775	12A2p6	cell line	sgMsh2	75197775	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	51	0	0	NA	exonic	Ankzf1	nonsynonymous SNV	Ankzf1:NM_026187:exon9:c.A1408C:p.S470R	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.9999147	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	75451373	12A2p6	cell line	sgMsh2	75451373	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	123	0	0	NA	exonic	Asic4	nonsynonymous SNV	Asic4:NM_183022:exon1:c.A542C:p.N181T	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.5917483	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	75482735	12A2p6	cell line	sgMsh2	75482735	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.114	44	0	0	NA	exonic	Tmem198	nonsynonymous SNV	Tmem198:NM_177056:exon3:c.G333A:p.M111I	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	2	0.9688833	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	78697007	12A2p6	cell line	sgMsh2	78697007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	276	0	0	NA	exonic	Acsl3	nonsynonymous SNV	"Acsl3:NM_001136222:exon8:c.T814C:p.C272R,Acsl3:NM_001033606:exon9:c.T1270C:p.C424R,Acsl3:NM_028817:exon10:c.T1270C:p.C424R"	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7829394	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	78817772	12A2p6	cell line	sgMsh2	78817772	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	102	0	0	NA	exonic	Kcne4	nonsynonymous SNV	Kcne4:NM_021342:exon2:c.T136C:p.Y46H	1qC4	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.9932395	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	80560971	12A2p6	cell line	sgMsh2	80560971	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	297	0	0	NA	exonic	Dock10	nonsynonymous SNV	"Dock10:NM_001285927:exon26:c.A2858C:p.E953A,Dock10:NM_175291:exon26:c.A2894C:p.E965A"	1qC5	chr1-3216742-85113944	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	86599081	12A2p6	cell line	sgMsh2	86599081	G	A	SNV	Mutect2;Vardict	2	0.028	264	0	0	NA	exonic	Cops7b	nonsynonymous SNV	"Cops7b:NM_001360887:exon5:c.G406A:p.V136I,Cops7b:NM_001360888:exon5:c.G43A:p.V15I,Cops7b:NM_172974:exon6:c.G406A:p.V136I"	1qC5	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	5.52E-09	TGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	90214536	12A2p6	cell line	sgMsh2	90214536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.683	94	0	0	NA	exonic	Ackr3	nonsynonymous SNV	"Ackr3:NM_007722:exon2:c.T716C:p.M239T,Ackr3:NM_001271607:exon3:c.T716C:p.M239T"	1qD	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	9.10E-09	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	90779317	12A2p6	cell line	sgMsh2	90779317	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	128	0	0	NA	exonic	Col6a3	nonsynonymous SNV	"Col6a3:NM_001243009:exon35:c.T6073C:p.F2025L,Col6a3:NM_001243008:exon38:c.T7894C:p.F2632L"	1qD	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.9920127	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	91166897	12A2p6	cell line	sgMsh2	91166897	T	A	SNV	Mutect2;Vardict	2	0.039	162	0	0	NA	exonic	Rbm44	nonsynonymous SNV	Rbm44:NM_001033408:exon13:c.T2585A:p.L862H	1qD	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9997969	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	93725255	12A2p6	cell line	sgMsh2	93725255	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	93	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon2:c.A66C:p.S22S,Thap4:NM_025920:exon3:c.A1278C:p.S426S"	1qD	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	2	0.7094507	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr1	100164096	12A2p6	cell line	sgMsh2	100164096	A	T	SNV	Mutect2;Vardict	2	0.051	204	0	0	NA	exonic	Cntnap5b	nonsynonymous SNV	Cntnap5b:NM_172851:exon10:c.A1503T:p.Q501H	1qE1.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9970626	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	104954073	12A2p6	cell line	sgMsh2	104954073	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	185	0	0	NA	exonic	Cdh20	nonsynonymous SNV	Cdh20:NM_011800:exon7:c.A1262G:p.N421S	1qE2.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.7591488	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	105591712	12A2p6	cell line	sgMsh2	105591712	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	208	0	0	NA	exonic	Pign	nonsynonymous SNV	Pign:NM_013784:exon17:c.T1484C:p.V495A	1qE2.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999862	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	119483555	12A2p6	cell line	sgMsh2	119483555	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	207	0	0	NA	exonic	Ralb	nonsynonymous SNV	Ralb:NM_022327:exon2:c.T53C:p.I18T	1qE2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999855	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	120488567	12A2p6	cell line	sgMsh2	120488567	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	170	0	0	NA	exonic	Marco	nonsynonymous SNV	Marco:NM_010766:exon7:c.G620A:p.G207E	1qE2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.9932043	TCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	123445240	12A2p6	cell line	sgMsh2	123445240	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.091	160	0	0	NA	exonic	Dpp10	frameshift insertion	Dpp10:NM_199021:exon8:c.669dupA:p.G224Rfs*4	1qE2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
22-1_par	chr1	123650299	12A2p6	cell line	sgMsh2	123650299	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.139	122	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon5:c.G442A:p.D148N	1qE2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.60621312	2	0.9305031	TCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	127738593	12A2p6	cell line	sgMsh2	127738593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	282	0	0	NA	exonic	Acmsd	nonsynonymous SNV	Acmsd:NM_001033041:exon2:c.A100C:p.K34Q	1qE3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9999999	CAA	nonsynonymous	GCAAG	11	GCAAGGCAAGG	NA
22-1_par	chr1	127749062	12A2p6	cell line	sgMsh2	127749062	C	T	SNV	Mutect2;Vardict	2	0.047	106	0	0	NA	exonic	Acmsd	nonsynonymous SNV	Acmsd:NM_001033041:exon5:c.C323T:p.P108L	1qE3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.9832348	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	131271830	12A2p6	cell line	sgMsh2	131271830	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	205	0	0	NA	exonic	Ikbke	nonsynonymous SNV	Ikbke:NM_019777:exon9:c.A925G:p.T309A	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.999976	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	131761778	12A2p6	cell line	sgMsh2	131761778	T	G	SNV	Mutect2;Vardict	2	0.046	142	0	0	NA	exonic	Slc26a9	nonsynonymous SNV	Slc26a9:NM_177243:exon13:c.T1462G:p.F488V	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9962247	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	61	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.8776389	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr1	132360611	12A2p6	cell line	sgMsh2	132360611	A	T	SNV	Mutect2;Vardict	2	0.065	74	0	0	NA	exonic	Tmcc2	nonsynonymous SNV	"Tmcc2:NM_001311108:exon2:c.T632A:p.M211K,Tmcc2:NM_001311107:exon3:c.T1103A:p.M368K,Tmcc2:NM_178874:exon3:c.T1337A:p.M446K"	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5963099	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	132584418	12A2p6	cell line	sgMsh2	132584418	T	G	SNV	Mutect2;Vardict	2	0.026	293	0	0	NA	exonic	Nfasc	nonsynonymous SNV	Nfasc:NM_182716:exon26:c.A3082C:p.T1028P	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.18E-09	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	135532380	12A2p6	cell line	sgMsh2	135532380	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	112	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon3:c.A1204C:p.T402P	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9979278	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	136324853	12A2p6	cell line	sgMsh2	136324853	T	G	SNV	Mutect2;Vardict	2	0.037	136	0	0	NA	exonic	Camsap2	nonsynonymous SNV	"Camsap2:NM_001347109:exon2:c.A283C:p.K95Q,Camsap2:NM_001347110:exon2:c.A283C:p.K95Q"	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9995648	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	139469415	12A2p6	cell line	sgMsh2	139469415	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	191	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon10:c.T2744C:p.L915S	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9875172	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	139480166	12A2p6	cell line	sgMsh2	139480166	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	260	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T6790C:p.Y2264H	1qE4	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	140426949	12A2p6	cell line	sgMsh2	140426949	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	308	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon10:c.T941G:p.L314R	1qF	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	2	1.09E-09	CTT	nonsynonymous	ACTT	9	ACTTACTTA	NA
22-1_par	chr1	140512940	12A2p6	cell line	sgMsh2	140512940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	103	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon17:c.G1903A:p.V635M	1qF	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.47101451	2	0.999706	GGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	149851408	12A2p6	cell line	sgMsh2	149851408	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	485	0	0	NA	exonic	Pla2g4a	nonsynonymous SNV	"Pla2g4a:NM_001305632:exon14:c.A1596T:p.K532N,Pla2g4a:NM_008869:exon15:c.A1620T:p.K540N"	1qG1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.100308646	3	1	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	150742270	12A2p6	cell line	sgMsh2	150742270	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	303	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon25:c.G3865A:p.A1289T	1qG1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9925995	GCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	151353934	12A2p6	cell line	sgMsh2	151353934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	149	0	0	NA	exonic	Ivns1abp	synonymous SNV	"Ivns1abp:NM_001359262:exon5:c.T246C:p.Y82Y,Ivns1abp:NM_001039511:exon6:c.T372C:p.Y124Y,Ivns1abp:NM_001039512:exon6:c.T372C:p.Y124Y,Ivns1abp:NM_054102:exon6:c.T372C:p.Y124Y"	1qG1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.563747	ATT	synonymous	NA	NA	NA	NA
22-1_par	chr1	151457684	12A2p6	cell line	sgMsh2	151457684	-	A	Insertion	Strelka2;Vardict	2	0.1379	58	0	0	NA	exonic	Trmt1l	frameshift insertion	"Trmt1l:NM_001357569:exon14:c.1875dupA:p.F628Ifs*17,Trmt1l:NM_001357570:exon15:c.1134dupA:p.F381Ifs*17,Trmt1l:NM_026876:exon15:c.1938dupA:p.F649Ifs*17"	1qG1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.60141575	NA	NA	TTA	frameshift	A	5	AAAAA	1
22-1_par	chr1	153458373	12A2p6	cell line	sgMsh2	153458373	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	337	0	0	NA	exonic	Dhx9	nonsynonymous SNV	Dhx9:NM_007842:exon25:c.A3037G:p.K1013E	1qG3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999999	TTT	nonsynonymous	TTCTC	10	TTCTCTTCTC	NA
22-1_par	chr1	154443946	12A2p6	cell line	sgMsh2	154443946	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	123	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon30:c.A4193C:p.N1398T	1qG3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.501543229	2	0.9999411	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	154465792	12A2p6	cell line	sgMsh2	154465792	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	359	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon25:c.T3655C:p.S1219P	1qG3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.505904474	2	1.01E-09	GAT	nonsynonymous	ATCC	8	ATCCATCC	NA
22-1_par	chr1	161046866	12A2p6	cell line	sgMsh2	161046866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	128	0	0	NA	exonic	Dars2	nonsynonymous SNV	Dars2:NM_172644:exon13:c.A1252G:p.M418V	1qH2.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9985919	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	161159035	12A2p6	cell line	sgMsh2	161159035	G	-	Deletion	Mutect2;Vardict	2	0.082	122	0	0	NA	exonic	Tex50	frameshift deletion	Tex50:NM_001195189:exon1:c.152delC:p.P51Hfs*31	1qH2.1	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	NA	NA	TGG	frameshift	G	5	GGGGG	-1
22-1_par	chr1	165543172	12A2p6	cell line	sgMsh2	165543172	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	271	0	0	NA	exonic	Adcy10	synonymous SNV	"Adcy10:NM_001357427:exon17:c.G531A:p.L177L,Adcy10:NM_173029:exon17:c.G2019A:p.L673L"	1qH2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9999874	TGG	synonymous	NA	NA	NA	NA
22-1_par	chr1	169690436	12A2p6	cell line	sgMsh2	169690436	A	G	SNV	Mutect2;Vardict	2	0.05	85	0	0	NA	exonic	Rgs5	nonsynonymous SNV	Rgs5:NM_009063:exon4:c.A238G:p.S80G	1qH2.3	chr1-85662188-171504463	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9458062	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	172491884	12A2p6	cell line	sgMsh2	172491884	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	218	0	0	NA	exonic	Igsf9	nonsynonymous SNV	"Igsf9:NM_001145800:exon8:c.C835T:p.R279C,Igsf9:NM_033608:exon8:c.C835T:p.R279C"	1qH3	chr1-171582505-173756307	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	2	0.9999988	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	172493513	12A2p6	cell line	sgMsh2	172493513	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.15	120	0	0	NA	exonic	Igsf9	nonsynonymous SNV	"Igsf9:NM_001145800:exon10:c.A1131C:p.E377D,Igsf9:NM_033608:exon10:c.A1131C:p.E377D"	1qH3	chr1-171582505-173756307	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.65418682	1	0.6654614	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	174391660	12A2p6	cell line	sgMsh2	174391660	T	C	SNV	Mutect2;Vardict	2	0.03	393	0	0	NA	exonic	Olfr248	nonsynonymous SNV	Olfr248:NM_146714:exon1:c.T590C:p.V197A	1qH3	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	178914917	12A2p6	cell line	sgMsh2	178914917	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	95	0	0	NA	exonic	Kif26b	nonsynonymous SNV	Kif26b:NM_001161665:exon12:c.G2577T:p.E859D	1qH4	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.7514671	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	179423375	12A2p6	cell line	sgMsh2	179423375	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	613	0	0	NA	exonic	Smyd3	nonsynonymous SNV	Smyd3:NM_027188:exon2:c.T208C:p.Y70H	1qH4	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	179795751	12A2p6	cell line	sgMsh2	179795751	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	96	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon3:c.G301C:p.A101P	1qH4	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.9521013	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr1	182442839	12A2p6	cell line	sgMsh2	182442839	T	C	SNV	Mutect2;Vardict	2	0.157	24	0	0	NA	exonic	Trp53bp2	synonymous SNV	Trp53bp2:NM_173378:exon9:c.T1203C:p.S401S	1qH5	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.684715538	2	0.6672014	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr1	188964841	12A2p6	cell line	sgMsh2	188964841	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	431	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon71:c.T15495C:p.Y5165Y	1qH6	chr1-173922231-195166209	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	5.00E-08	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr10	5041570	12A2p6	cell line	sgMsh2	5041570	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	197	0	0	NA	exonic	Syne1	synonymous SNV	"Syne1:NM_022027:exon10:c.C1593T:p.G531G,Syne1:NM_001079686:exon48:c.C7776T:p.G2592G,Syne1:NM_001347711:exon139:c.C25179T:p.G8393G,Syne1:NM_001347732:exon139:c.C25143T:p.G8381G"	10qA1	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.9999574	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr10	10719538	12A2p6	cell line	sgMsh2	10719538	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	247	0	0	NA	exonic	Grm1	nonsynonymous SNV	"Grm1:NM_001114333:exon8:c.A2345C:p.N782T,Grm1:NM_016976:exon8:c.A2345C:p.N782T"	10qA1	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999993	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	13234204	12A2p6	cell line	sgMsh2	13234204	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	127	0	0	NA	exonic	Phactr2	synonymous SNV	"Phactr2:NM_001033257:exon9:c.C1407T:p.N469N,Phactr2:NM_001359294:exon9:c.C1260T:p.N420N,Phactr2:NM_001195065:exon10:c.C1596T:p.N532N,Phactr2:NM_001195066:exon10:c.C1386T:p.N462N,Phactr2:NM_001195096:exon10:c.C1419T:p.N473N"	10qA2	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.462292019	2	0.9999413	CGT	synonymous	TCT	14	TCTTCTTCGTTCTT	NA
22-1_par	chr10	20136974	12A2p6	cell line	sgMsh2	20136974	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	94	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon27:c.T3863A:p.I1288N	10qA3	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.7834918	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	23109984	12A2p6	cell line	sgMsh2	23109984	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	373	0	0	NA	exonic	Eya4	nonsynonymous SNV	Eya4:NM_001347372:exon18:c.A1757G:p.H586R	10qA3	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	1.07E-09	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	24654929	12A2p6	cell line	sgMsh2	24654929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	229	0	0	NA	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon17:c.T1628C:p.V543A,Enpp1:NM_001308329:exon17:c.T572C:p.V191A,Enpp1:NM_008813:exon17:c.T1628C:p.V543A"	10qA4	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.9183504	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	27104246	12A2p6	cell line	sgMsh2	27104246	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	125	0	0	NA	exonic	Lama2	nonsynonymous SNV	Lama2:NM_008481:exon39:c.A5572G:p.K1858E	10qA4	chr10-3120209-33157462	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.5949946	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	39060178	12A2p6	cell line	sgMsh2	39060178	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	308	0	0	NA	exonic	Lama4	synonymous SNV	Lama4:NM_010681:exon14:c.A1848G:p.A616A	10qB1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9993691	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr10	39864748	12A2p6	cell line	sgMsh2	39864748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	90	0	0	NA	exonic	Rev3l	nonsynonymous SNV	Rev3l:NM_011264:exon30:c.T8926C:p.Y2976H	10qB1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.9848441	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	57486596	12A2p6	cell line	sgMsh2	57486596	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.149	33	0	0	NA	exonic	Hsf2	nonsynonymous SNV	Hsf2:NM_008297:exon1:c.A88C:p.S30R	10qB4	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.649825574	2	0.739499	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	60292512	12A2p6	cell line	sgMsh2	60292512	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	255	0	0	NA	exonic	Psap	nonsynonymous SNV	"Psap:NM_001146120:exon3:c.T182C:p.L61P,Psap:NM_001146121:exon3:c.T182C:p.L61P,Psap:NM_001146122:exon3:c.T182C:p.L61P,Psap:NM_001146123:exon3:c.T182C:p.L61P,Psap:NM_001146124:exon3:c.T173C:p.L58P,Psap:NM_011179:exon3:c.T182C:p.L61P"	10qB4	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999988	CTT	nonsynonymous	CCTT	8	CCTTCCTT	NA
22-1_par	chr10	61751717	12A2p6	cell line	sgMsh2	61751717	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	64	0	0	NA	exonic	Macroh2a2	frameshift deletion	Macroh2a2:NM_207000:exon4:c.437delG:p.G146Vfs*53	10qB4	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.51026572	NA	NA	ACC	frameshift	C	5	CCCCC	-1
22-1_par	chr10	69892368	12A2p6	cell line	sgMsh2	69892368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	295	0	0	NA	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon17:c.A1883G:p.D628G,Ank3:NM_170688:exon17:c.A1883G:p.D628G,Ank3:NM_170689:exon17:c.A1883G:p.D628G,Ank3:NM_170690:exon17:c.A1883G:p.D628G,Ank3:NM_170728:exon17:c.A1883G:p.D628G,Ank3:NM_170729:exon17:c.A1883G:p.D628G"	10qB5.3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	2	0.9999993	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	75154934	12A2p6	cell line	sgMsh2	75154934	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	212	0	0	NA	exonic	Bcr	synonymous SNV	Bcr:NM_001081412:exon10:c.G2271A:p.P757P	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999888	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr10	76492938	12A2p6	cell line	sgMsh2	76492938	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	149	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon15:c.T3389G:p.V1130G	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.997801	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	78984249	12A2p6	cell line	sgMsh2	78984249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	275	0	0	NA	exonic	Olfr1352	nonsynonymous SNV	Olfr1352:NM_147071:exon2:c.T458C:p.V153A	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999978	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	81587618	12A2p6	cell line	sgMsh2	81587618	C	T	SNV	Mutect2;Vardict	2	0.08	56	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon16:c.C1533T:p.G511G,Tle2:NM_019725:exon16:c.C1638T:p.G546G"	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	0.7732971	GCG	synonymous	NA	NA	NA	NA
22-1_par	chr10	84375096	12A2p6	cell line	sgMsh2	84375096	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	43	0	0	NA	exonic	Nuak1	nonsynonymous SNV	Nuak1:NM_001004363:exon7:c.A1127G:p.N376S	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.9619077	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	86804930	12A2p6	cell line	sgMsh2	86804930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	219	0	0	NA	exonic	Nt5dc3	nonsynonymous SNV	Nt5dc3:NM_175331:exon2:c.A352G:p.N118D	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.9985761	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	88526383	12A2p6	cell line	sgMsh2	88526383	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	242	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon24:c.T2894G:p.V965G,Mybpc1:NM_175418:exon25:c.T2936G:p.V979G"	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9995775	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	88526395	12A2p6	cell line	sgMsh2	88526395	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	243	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon24:c.T2882G:p.I961S,Mybpc1:NM_175418:exon25:c.T2924G:p.I975S"	10qC1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	93478477	12A2p6	cell line	sgMsh2	93478477	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	609	0	0	NA	exonic	Lta4h	synonymous SNV	"Lta4h:NM_001313897:exon15:c.T1410C:p.I470I,Lta4h:NM_008517:exon15:c.T1410C:p.I470I"	10qC2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	1.00E-09	TTG	synonymous	NA	NA	NA	NA
22-1_par	chr10	93847095	12A2p6	cell line	sgMsh2	93847095	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	401	0	0	NA	exonic	Usp44	nonsynonymous SNV	"Usp44:NM_001206851:exon3:c.A1406G:p.H469R,Usp44:NM_001376981:exon5:c.A1406G:p.H469R"	10qC2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9999984	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	102545403	12A2p6	cell line	sgMsh2	102545403	A	G	SNV	Mutect2;Vardict	2	0.028	265	0	0	NA	exonic	Rassf9	synonymous SNV	Rassf9:NM_146240:exon2:c.A645G:p.E215E	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	5.21E-09	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr10	103144489	12A2p6	cell line	sgMsh2	103144489	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	82	0	0	NA	exonic	Lrriq1	synonymous SNV	Lrriq1:NM_001163559:exon22:c.G4548A:p.K1516K	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.571323156	2	0.9800532	TCT	synonymous	NA	NA	NA	NA
22-1_par	chr10	107572988	12A2p6	cell line	sgMsh2	107572988	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	107	0	0	NA	exonic	Ptprq	nonsynonymous SNV	"Ptprq:NM_001081432:exon33:c.A5663C:p.E1888A,Ptprq:NM_001370987:exon33:c.A5666C:p.E1889A"	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.8481241	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	107573003	12A2p6	cell line	sgMsh2	107573003	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	94	0	0	NA	exonic	Ptprq	nonsynonymous SNV	"Ptprq:NM_001081432:exon33:c.A5648T:p.Q1883L,Ptprq:NM_001370987:exon33:c.A5651T:p.Q1884L"	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	2	0.9390615	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	111299715	12A2p6	cell line	sgMsh2	111299715	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	182	0	0	NA	exonic	Bbs10	nonsynonymous SNV	Bbs10:NM_027914:exon2:c.T688G:p.S230A	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9996902	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	111492956	12A2p6	cell line	sgMsh2	111492956	G	A	SNV	Mutect2;Vardict	2	0.032	170	0	0	NA	exonic	Nap1l1	nonsynonymous SNV	"Nap1l1:NM_001358932:exon7:c.G556A:p.G186R,Nap1l1:NM_015781:exon9:c.G745A:p.G249R"	10qD1	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.9999865	CGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	116229545	12A2p6	cell line	sgMsh2	116229545	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	306	0	0	NA	exonic	Ptprr	nonsynonymous SNV	"Ptprr:NM_001161838:exon4:c.T522G:p.N174K,Ptprr:NM_001161839:exon5:c.T522G:p.N174K,Ptprr:NM_001161840:exon5:c.T522G:p.N174K,Ptprr:NM_001161837:exon7:c.T933G:p.N311K,Ptprr:NM_001358484:exon7:c.T891G:p.N297K,Ptprr:NM_011217:exon8:c.T1254G:p.N418K"	10qD2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.9898223	ATC	nonsynonymous	A	5	AAAAA	NA
22-1_par	chr10	120784104	12A2p6	cell line	sgMsh2	120784104	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	111	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.C525T:p.S175S	10qD2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7186906	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr10	120933457	12A2p6	cell line	sgMsh2	120933457	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	70	0	0	NA	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon6:c.T1880C:p.F627S	10qD2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.9112067	GAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	122096971	12A2p6	cell line	sgMsh2	122096971	C	T	SNV	Mutect2;Strelka2	2	0.273	11	0	0	NA	exonic	Rxylt1	nonsynonymous SNV	Rxylt1:NM_153059:exon1:c.G101A:p.R34Q	10qD2	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.6701235	CCG	nonsynonymous	CGGC	8	CGGCCGGC	NA
22-1_par	chr10	127296379	12A2p6	cell line	sgMsh2	127296379	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	94	0	0	NA	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon21:c.T2624C:p.V875A,Mars1:NM_001171582:exon22:c.T2648C:p.V883A"	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.418679565	2	0.9949989	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	128482174	12A2p6	cell line	sgMsh2	128482174	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	251	0	0	NA	exonic	Smarcc2	nonsynonymous SNV	"Smarcc2:NM_001114097:exon18:c.T1742G:p.M581R,Smarcc2:NM_198160:exon18:c.T1742G:p.M581R,Smarcc2:NM_001114096:exon19:c.T1835G:p.M612R,Smarcc2:NM_001372395:exon19:c.T1835G:p.M612R"	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	2	0.9602483	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	128820012	12A2p6	cell line	sgMsh2	128820012	C	T	SNV	Mutect2;Vardict	2	0.055	95	0	0	NA	exonic	Ormdl2	nonsynonymous SNV	"Ormdl2:NM_001359169:exon3:c.G268A:p.D90N,Ormdl2:NM_001359170:exon3:c.G268A:p.D90N,Ormdl2:NM_001359171:exon3:c.G268A:p.D90N,Ormdl2:NM_024180:exon3:c.G268A:p.D90N"	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.0980943	TCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	129261130	12A2p6	cell line	sgMsh2	129261130	T	C	SNV	Mutect2;Vardict	2	0.042	269	0	0	NA	exonic	Olfr776	synonymous SNV	Olfr776:NM_207559:exon1:c.T168C:p.P56P	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999952	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr10	129269164	12A2p6	cell line	sgMsh2	129269164	T	G	SNV	Mutect2;Vardict	2	0.033	327	0	0	NA	exonic	Olfr777	nonsynonymous SNV	Olfr777:NM_146544:exon1:c.A158C:p.K53T	10qD3	chr10-33471244-129526639	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	2.24E-09	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr10	129682582	12A2p6	cell line	sgMsh2	129682582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	224	0	0	NA	exonic	Olfr802	synonymous SNV	Olfr802:NM_146932:exon1:c.C156T:p.H52H	10qD3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GGT	synonymous	NA	NA	NA	NA
22-1_par	chr10	129705674	12A2p6	cell line	sgMsh2	129705674	A	T	SNV	Mutect2;Vardict	2	0.036	401	0	0	NA	exonic	Olfr804	nonsynonymous SNV	Olfr804:NM_001011821:exon1:c.A795T:p.R265S	10qD3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GAG	nonsynonymous	GTGTCT	12	GTGTCTGTGTCT	NA
22-1_par	chr10	129754667	12A2p6	cell line	sgMsh2	129754667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	227	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.C782A:p.A261D	10qD3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	3203678	12A2p6	cell line	sgMsh2	3203678	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	134	0	0	NA	exonic	Eif4enif1	nonsynonymous SNV	"Eif4enif1:NM_001166547:exon2:c.A21C:p.E7D,Eif4enif1:NM_001166548:exon2:c.A21C:p.E7D,Eif4enif1:NM_001166549:exon2:c.A21C:p.E7D,Eif4enif1:NM_023743:exon2:c.A21C:p.E7D"	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	1	0.9994936	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	3978024	12A2p6	cell line	sgMsh2	3978024	A	C	SNV	Mutect2;Vardict	2	0.044	94	0	0	NA	exonic	Pes1	nonsynonymous SNV	Pes1:NM_022889:exon14:c.A1663C:p.I555L	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9853795	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	4918179	12A2p6	cell line	sgMsh2	4918179	A	-	Deletion	Strelka2;Vardict	2	0.047	149	0	0	NA	exonic	Thoc5	frameshift deletion	Thoc5:NM_172438:exon13:c.1231delA:p.T413Lfs*15	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	NA	NA	GAA	frameshift	A	5	AAAAA	-1
22-1_par	chr11	5717256	12A2p6	cell line	sgMsh2	5717256	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	182	0	0	NA	exonic	Urgcp	synonymous SNV	"Urgcp:NM_001361591:exon4:c.C1081T:p.L361L,Urgcp:NM_001361592:exon4:c.C985T:p.L329L,Urgcp:NM_001361589:exon5:c.C1081T:p.L361L,Urgcp:NM_001077661:exon6:c.C1081T:p.L361L,Urgcp:NM_001361590:exon6:c.C1081T:p.L361L,Urgcp:NM_178623:exon6:c.C1210T:p.L404L,Urgcp:NM_001361588:exon7:c.C1081T:p.L361L"	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.418679565	2	0.9999769	AGC	synonymous	NA	NA	NA	NA
22-1_par	chr11	6602295	12A2p6	cell line	sgMsh2	6602295	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.199	18	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.C895A:p.P299T	11qA1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.867887848	1	0.710661	GGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	20021272	12A2p6	cell line	sgMsh2	20021272	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	338	0	0	NA	exonic	Spred2	nonsynonymous SNV	Spred2:NM_033523:exon6:c.A1058G:p.Y353C	11qA3.1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9998331	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	22095705	12A2p6	cell line	sgMsh2	22095705	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	51	0	0	NA	exonic	Ehbp1	synonymous SNV	"Ehbp1:NM_001252515:exon14:c.A2043G:p.L681L,Ehbp1:NM_153078:exon14:c.A1968G:p.L656L"	11qA3.2	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9138667	TTA	synonymous	NA	NA	NA	NA
22-1_par	chr11	22836531	12A2p6	cell line	sgMsh2	22836531	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	145	0	0	NA	exonic	B3gnt2	nonsynonymous SNV	"B3gnt2:NM_001169114:exon2:c.A656C:p.N219T,B3gnt2:NM_016888:exon2:c.A656C:p.N219T"	11qA3.2	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.344538392	2	0.9739316	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	29211721	12A2p6	cell line	sgMsh2	29211721	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	144	0	0	NA	exonic	Ppp4r3b	synonymous SNV	"Ppp4r3b:NM_001363359:exon13:c.A2052G:p.T684T,Ppp4r3b:NM_001363360:exon13:c.A2016G:p.T672T,Ppp4r3b:NM_001363358:exon14:c.A2073G:p.T691T,Ppp4r3b:NM_001363361:exon14:c.A1806G:p.T602T,Ppp4r3b:NM_134034:exon14:c.A2094G:p.T698T"	11qA3.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9679402	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr11	29707705	12A2p6	cell line	sgMsh2	29707705	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.102	76	0	0	NA	exonic	Rtn4	nonsynonymous SNV	"Rtn4:NM_194051:exon3:c.C1510T:p.P504S,Rtn4:NM_194054:exon3:c.C1858T:p.P620S"	11qA3.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.444847038	2	0.993714	ACC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	30891946	12A2p6	cell line	sgMsh2	30891946	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.047	201	0	0	NA	exonic	Gpr75	frameshift insertion	Gpr75:NM_175490:exon2:c.851dupA:p.T285Nfs*5	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	NA	NA	TCA	frameshift	NA	NA	NA	1
22-1_par	chr11	33491328	12A2p6	cell line	sgMsh2	33491328	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	239	0	0	NA	exonic	Ranbp17	nonsynonymous SNV	"Ranbp17:NM_001362875:exon5:c.T488C:p.L163S,Ranbp17:NM_023146:exon5:c.T488C:p.L163S"	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.9539539	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	34687593	12A2p6	cell line	sgMsh2	34687593	C	-	Deletion	Mutect2;Vardict	2	0.083	158	0	0	NA	exonic	Dock2	frameshift deletion	Dock2:NM_033374:exon22:c.2182delG:p.E728Sfs*12	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	NA	NA	TCC	frameshift	C	5	CCCCC	-1
22-1_par	chr11	34695434	12A2p6	cell line	sgMsh2	34695434	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	192	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon16:c.T1550C:p.L517P	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.997226	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	35867334	12A2p6	cell line	sgMsh2	35867334	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	104	0	0	NA	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon15:c.T2184G:p.N728K	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9733741	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	36273323	12A2p6	cell line	sgMsh2	36273323	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	68	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon5:c.A1094C:p.K365T,Tenm2:NM_011856:exon5:c.A1094C:p.K365T"	11qA4	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	1	0.9549963	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	40753994	12A2p6	cell line	sgMsh2	40753994	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	79	0	0	NA	exonic	Ccng1	nonsynonymous SNV	Ccng1:NM_009831:exon2:c.A75C:p.R25S	11qA5	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.6998285	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	46584385	12A2p6	cell line	sgMsh2	46584385	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	162	0	0	NA	exonic	BC053393	nonsynonymous SNV	BC053393:NM_001025435:exon4:c.A406C:p.T136P	11qB1.1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	0.9999693	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	46584388	12A2p6	cell line	sgMsh2	46584388	A	-	Deletion	Mutect2;Vardict	2	0.033	164	0	0	NA	exonic	BC053393	frameshift deletion	BC053393:NM_001025435:exon4:c.409delA:p.G138Afs*18	11qB1.1	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	NA	NA	TAA	frameshift	NA	NA	NA	-1
22-1_par	chr11	49535569	12A2p6	cell line	sgMsh2	49535569	G	A	SNV	Mutect2;Vardict	2	0.024	520	0	0	NA	exonic	Olfr1382	nonsynonymous SNV	Olfr1382:NM_001011790:exon1:c.G383A:p.R128H	11qB1.2	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	3	1	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	53536695	12A2p6	cell line	sgMsh2	53536695	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	289	0	0	NA	exonic	Septin8	nonsynonymous SNV	"Septin8:NM_001252332:exon6:c.A740G:p.K247R,Septin8:NM_001252333:exon6:c.A734G:p.K245R,Septin8:NM_001347496:exon6:c.A740G:p.K247R,Septin8:NM_001361968:exon6:c.A734G:p.K245R,Septin8:NM_001361969:exon6:c.A554G:p.K185R,Septin8:NM_033144:exon6:c.A740G:p.K247R"	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	1.77E-09	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	53997524	12A2p6	cell line	sgMsh2	53997524	A	G	SNV	Mutect2;Vardict	2	0.08	110	0	0	NA	exonic	Slc22a4	nonsynonymous SNV	"Slc22a4:NM_001330304:exon3:c.T149C:p.V50A,Slc22a4:NM_019687:exon4:c.T677C:p.V226A"	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	0.9453411	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	58701969	12A2p6	cell line	sgMsh2	58701969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	252	0	0	NA	exonic	Olfr319	synonymous SNV	Olfr319:NM_146500:exon1:c.C267T:p.T89T	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1	CCA	synonymous	NA	NA	NA	NA
22-1_par	chr11	58701999	12A2p6	cell line	sgMsh2	58701999	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	225	0	0	NA	exonic	Olfr319	synonymous SNV	Olfr319:NM_146500:exon1:c.C297T:p.I99I	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9983081	TCC	synonymous	NA	NA	NA	NA
22-1_par	chr11	59331297	12A2p6	cell line	sgMsh2	59331297	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.186	18	0	0	NA	exonic	Wnt9a	nonsynonymous SNV	Wnt9a:NM_139298:exon4:c.A1020T:p.Q340H	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.811191657	1	0.009296665	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	59804531	12A2p6	cell line	sgMsh2	59804531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	31	0	0	NA	exonic	Flcn	nonsynonymous SNV	"Flcn:NM_001271356:exon3:c.A239G:p.D80G,Flcn:NM_001271357:exon3:c.A239G:p.D80G,Flcn:NM_146018:exon3:c.A239G:p.D80G"	11qB1.3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	2	0.9138817	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	67348802	12A2p6	cell line	sgMsh2	67348802	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	55	0	0	NA	exonic	Myh13	nonsynonymous SNV	Myh13:NM_001081250:exon18:c.A2177G:p.Y726C	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	2	0.8964479	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	69035794	12A2p6	cell line	sgMsh2	69035794	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.114	54	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon22:c.A3400T:p.T1134S,Ctc1:NM_001143790:exon22:c.A3397T:p.T1133S,Ctc1:NM_001281464:exon22:c.A2659T:p.T887S,Ctc1:NM_001281465:exon22:c.A2662T:p.T888S"	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	2	0.9868439	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	69101862	12A2p6	cell line	sgMsh2	69101862	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	57	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon6:c.C839A:p.T280N,Per1:NM_011065:exon6:c.C839A:p.T280N"	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.797041	ACT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	69423196	12A2p6	cell line	sgMsh2	69423196	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.214	19	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon80:c.G12349A:p.D4117N	11qB3	chr11-3133205-69578588	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	1	0.000926786	TCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	69684261	12A2p6	cell line	sgMsh2	69684261	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	86	0	0	NA	exonic	Tnfsf13;Tnfsfm13	nonsynonymous SNV	"Tnfsf13:NM_001159505:exon4:c.T431A:p.I144N,Tnfsf13:NM_023517:exon4:c.T434A:p.I145N,Tnfsfm13:NM_001034097:exon11:c.T941A:p.I314N,Tnfsfm13:NM_001159503:exon11:c.T935A:p.I312N"	11qB3	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.9842552	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	69984502	12A2p6	cell line	sgMsh2	69984502	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	104	0	0	NA	exonic	Ctdnep1	synonymous SNV	Ctdnep1:NM_026017:exon3:c.A256C:p.R86R	11qB3	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.588768138	2	9.94E-07	GAG	synonymous	NA	NA	NA	NA
22-1_par	chr11	73305502	12A2p6	cell line	sgMsh2	73305502	T	-	Deletion	Strelka2;Vardict	2	0.0833	60	0	0	NA	exonic	Aspa	frameshift deletion	Aspa:NM_023113:exon6:c.873delA:p.E292Kfs*8	11qB4	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.363291747	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
22-1_par	chr11	75438041	12A2p6	cell line	sgMsh2	75438041	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	50	0	0	NA	exonic	Serpinf2	synonymous SNV	Serpinf2:NM_008878:exon4:c.C162T:p.N54N	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.9790442	GGT	synonymous	NA	NA	NA	NA
22-1_par	chr11	78212904	12A2p6	cell line	sgMsh2	78212904	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	230	0	0	NA	exonic	Supt6	nonsynonymous SNV	Supt6:NM_009297:exon30:c.A3974G:p.Y1325C	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9998985	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	78288060	12A2p6	cell line	sgMsh2	78288060	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	372	0	0	NA	exonic	2610507B11Rik	synonymous SNV	2610507B11Rik:NM_001002004:exon35:c.G6150A:p.V2050V	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.999998	TGA	synonymous	NA	NA	NA	NA
22-1_par	chr11	78403154	12A2p6	cell line	sgMsh2	78403154	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	245	0	0	NA	exonic	Slc13a2	nonsynonymous SNV	Slc13a2:NM_022411:exon6:c.T781G:p.W261G	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	0.9999995	CAT	nonsynonymous	AAACC	11	AAACCAAACCA	NA
22-1_par	chr11	79553978	12A2p6	cell line	sgMsh2	79553978	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	155	0	0	NA	exonic	Nf1	synonymous SNV	Nf1:NM_010897:exon48:c.A7176G:p.L2392L	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9654978	TAG	synonymous	NA	NA	NA	NA
22-1_par	chr11	80094816	12A2p6	cell line	sgMsh2	80094816	A	G	SNV	Mutect2;Vardict	2	0.036	173	0	0	NA	exonic	Atad5	nonsynonymous SNV	Atad5:NM_001029856:exon2:c.A728G:p.N243S	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999571	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	80456260	12A2p6	cell line	sgMsh2	80456260	T	C	SNV	Mutect2;Vardict	2	0.066	109	0	0	NA	exonic	Psmd11	synonymous SNV	Psmd11:NM_178616:exon6:c.T469C:p.L157L	11qB5	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5366537	GTT	synonymous	A	5	AAAAA	NA
22-1_par	chr11	82765348	12A2p6	cell line	sgMsh2	82765348	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	74	0	0	NA	exonic	Zfp830	frameshift deletion	Zfp830:NM_025884:exon1:c.977delT:p.L327fs*0	11qC	chr11-69590981-82929860	3	3	0	0.9	3.925120919	POOR GOF (79.6%)	1	0.649825574	NA	NA	GTT	frameshift	NA	NA	NA	-1
22-1_par	chr11	86135358	12A2p6	cell line	sgMsh2	86135358	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	154	0	0	NA	exonic	Brip1	synonymous SNV	Brip1:NM_178309:exon14:c.T2007C:p.H669H	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9853912	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr11	86712684	12A2p6	cell line	sgMsh2	86712684	A	G	SNV	Mutect2;Vardict	2	0.108	47	0	0	NA	exonic	Cltc	nonsynonymous SNV	"Cltc:NM_001003908:exon15:c.T2315C:p.L772S,Cltc:NM_001356393:exon15:c.T2315C:p.L772S"	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.47101451	2	0.9676421	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	87045197	12A2p6	cell line	sgMsh2	87045197	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	361	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon6:c.A506G:p.Q169R	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9999993	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	89505218	12A2p6	cell line	sgMsh2	89505218	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.229	68	0	0	NA	exonic	Ankfn1	nonsynonymous SNV	Ankfn1:NM_001327810:exon6:c.G773C:p.R258T	11qC	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.998725212	1	0.9999977	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	91575821	12A2p6	cell line	sgMsh2	91575821	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	207	0	0	NA	exonic	Kif2b	synonymous SNV	Kif2b:NM_028547:exon1:c.A1635G:p.L545L	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8143806	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr11	96058337	12A2p6	cell line	sgMsh2	96058337	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	213	0	0	NA	exonic	Ube2z	nonsynonymous SNV	Ube2z:NM_172300:exon4:c.C675A:p.H225Q	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9964951	TGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	96827419	12A2p6	cell line	sgMsh2	96827419	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.158	22	0	0	NA	exonic	Nfe2l1	nonsynonymous SNV	"Nfe2l1:NM_001130450:exon2:c.A289G:p.T97A,Nfe2l1:NM_008686:exon2:c.A289G:p.T97A"	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.689076784	2	0.6676166	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	97711127	12A2p6	cell line	sgMsh2	97711127	-	TCACTGCT	Insertion	Mutect2;Vardict	2	0.033	252	0	0	NA	exonic	Psmb3	frameshift insertion	Psmb3:NM_011971:exon4:c.322_323insTCACTGCT:p.I109Tfs*26	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	NA	NA	TGT	frameshift	NA	NA	NA	8
22-1_par	chr11	97872930	12A2p6	cell line	sgMsh2	97872930	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	185	0	0	NA	exonic	Fbxo47	synonymous SNV	Fbxo47:NM_001081435:exon4:c.A357G:p.L119L	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9951651	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr11	98052893	12A2p6	cell line	sgMsh2	98052893	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	50	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon1:c.G90T:p.K30N	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.894055321	1	0.9978687	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	98432976	12A2p6	cell line	sgMsh2	98432976	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	151	0	0	NA	exonic	Erbb2	nonsynonymous SNV	Erbb2:NM_001003817:exon17:c.T2015G:p.I672S	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.479737001	2	0.9999963	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	99016494	12A2p6	cell line	sgMsh2	99016494	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	153	0	0	NA	exonic	Top2a	nonsynonymous SNV	Top2a:NM_011623:exon6:c.A509G:p.N170S	11qD	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7139195	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	103195327	12A2p6	cell line	sgMsh2	103195327	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	76	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	"Fmnl1:NM_001077698:exon18:c.A2267C:p.E756A,Fmnl1:NM_019679:exon18:c.A2267C:p.E756A"	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9530439	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	103198224	12A2p6	cell line	sgMsh2	103198224	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.158	24	0	0	NA	exonic	Fmnl1	stoploss	Fmnl1:NM_019679:exon26:c.T3271G:p.X1091E	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.689076784	2	0.6548519	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	103614521	12A2p6	cell line	sgMsh2	103614521	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	115	0	0	NA	exonic	Gm884	frameshift deletion	Gm884:NM_001033434:exon1:c.92delA:p.N31Tfs*18	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	NA	NA	GTT	frameshift	NA	NA	NA	-1
22-1_par	chr11	104633449	12A2p6	cell line	sgMsh2	104633449	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	141	0	0	NA	exonic	Itgb3	nonsynonymous SNV	Itgb3:NM_016780:exon4:c.T410C:p.V137A	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.5543149	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	105240392	12A2p6	cell line	sgMsh2	105240392	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	252	0	0	NA	exonic	Tlk2	nonsynonymous SNV	"Tlk2:NM_001294329:exon6:c.C251T:p.S84F,Tlk2:NM_001112705:exon8:c.C563T:p.S188F,Tlk2:NM_001294331:exon8:c.C467T:p.S156F,Tlk2:NM_001294334:exon8:c.C563T:p.S188F"	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.999973	TCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	106234914	12A2p6	cell line	sgMsh2	106234914	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	100	0	0	NA	exonic	Ddx42	synonymous SNV	"Ddx42:NM_001361640:exon3:c.A300G:p.Q100Q,Ddx42:NM_028074:exon8:c.A789G:p.Q263Q"	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	2	8.38E-09	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr11	106781920	12A2p6	cell line	sgMsh2	106781920	T	C	SNV	Mutect2;Vardict	2	0.04	227	0	0	NA	exonic	Ddx5	nonsynonymous SNV	"Ddx5:NM_007840:exon13:c.A1778G:p.Y593C,Ddx5:NM_001355676:exon14:c.A1778G:p.Y593C,Ddx5:NM_001355677:exon14:c.A1778G:p.Y593C"	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999875	ATA	nonsynonymous	ATATGC	12	ATATGCATATGC	NA
22-1_par	chr11	109573927	12A2p6	cell line	sgMsh2	109573927	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	164	0	0	NA	exonic	Wipi1	nonsynonymous SNV	Wipi1:NM_145940:exon13:c.A1334T:p.Q445L	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.7832662	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	110071492	12A2p6	cell line	sgMsh2	110071492	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	246	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon12:c.A1531C:p.I511L	11qE1	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9984294	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	115284286	12A2p6	cell line	sgMsh2	115284286	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	103	0	0	NA	exonic	Fads6	synonymous SNV	Fads6:NM_178035:exon5:c.T793C:p.L265L	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9596162	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr11	115361712	12A2p6	cell line	sgMsh2	115361712	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	85	0	0	NA	exonic	Hid1	nonsynonymous SNV	"Hid1:NM_001346774:exon2:c.C143T:p.A48V,Hid1:NM_175454:exon2:c.C143T:p.A48V"	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.946390266	1	0.9999993	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	115895014	12A2p6	cell line	sgMsh2	115895014	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	71	0	0	NA	exonic	Recql5	synonymous SNV	Recql5:NM_130454:exon14:c.A1932G:p.P644P	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	2	0.9736433	TTG	synonymous	NA	NA	NA	NA
22-1_par	chr11	116050757	12A2p6	cell line	sgMsh2	116050757	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	64	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon6:c.G829A:p.A277T,Unk:NM_172569:exon6:c.G829A:p.A277T"	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.710883011	1	0.8418094	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	116068437	12A2p6	cell line	sgMsh2	116068437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	14	0	0	NA	exonic	Unc13d	nonsynonymous SNV	Unc13d:NM_001009573:exon23:c.T2021C:p.I674T	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.7994304	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	116338829	12A2p6	cell line	sgMsh2	116338829	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	89	0	0	NA	exonic	Rnf157	synonymous SNV	Rnf157:NM_027258:exon19:c.T1923C:p.G641G	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.6596286	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr11	120715210	12A2p6	cell line	sgMsh2	120715210	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	91	0	0	NA	exonic	Lrrc45	nonsynonymous SNV	Lrrc45:NM_153545:exon4:c.T343A:p.S115T	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	2	0.9658068	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	120786682	12A2p6	cell line	sgMsh2	120786682	A	G	SNV	Mutect2;Vardict	2	0.061	177	0	0	NA	exonic	Gps1	nonsynonymous SNV	"Gps1:NM_001177874:exon5:c.A604G:p.I202V,Gps1:NM_001346709:exon5:c.A604G:p.I202V,Gps1:NM_001363440:exon5:c.A604G:p.I202V,Gps1:NM_145370:exon5:c.A721G:p.I241V"	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.8422036	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr11	120813942	12A2p6	cell line	sgMsh2	120813942	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.146	50	0	0	NA	exonic	Fasn	synonymous SNV	Fasn:NM_007988:exon23:c.C3816T:p.P1272P	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.636741838	2	0.7592532	GGG	synonymous	G	5	GGGGG	NA
22-1_par	chr11	121842313	12A2p6	cell line	sgMsh2	121842313	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	91	0	0	NA	exonic	Ptchd3	synonymous SNV	Ptchd3:NM_029049:exon4:c.T2028C:p.N676N	11qE2	chr11-83185009-121956668	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9240205	ATA	synonymous	NA	NA	NA	NA
22-1_par	chr12	4991052	12A2p6	cell line	sgMsh2	4991052	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	270	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon18:c.T2445C:p.C815C	12qA1.1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9998187	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr12	16928969	12A2p6	cell line	sgMsh2	16928969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	132	0	0	NA	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon3:c.A259T:p.M87L	12qA1.1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9993653	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	16948545	12A2p6	cell line	sgMsh2	16948545	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	410	0	0	NA	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon6:c.T811C:p.Y271H	12qA1.1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	5.00E-08	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	17274424	12A2p6	cell line	sgMsh2	17274424	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	144	0	0	NA	exonic	Pdia6	nonsynonymous SNV	Pdia6:NM_027959:exon4:c.A260G:p.Q87R	12qA1.1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5811599	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	21168226	12A2p6	cell line	sgMsh2	21168226	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	401	0	0	NA	exonic	Asap2	nonsynonymous SNV	"Asap2:NM_001004364:exon2:c.T149C:p.V50A,Asap2:NM_001098168:exon2:c.T149C:p.V50A,Asap2:NM_001135192:exon2:c.T149C:p.V50A"	12qA1.3	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	31282609	12A2p6	cell line	sgMsh2	31282609	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.104	159	0	0	NA	exonic	Lamb1	frameshift deletion	Lamb1:NM_008482:exon7:c.729delG:p.D245Ifs*62	12qA2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	NA	NA	TGG	frameshift	G	5	GGGGG	-1
22-1_par	chr12	31461720	12A2p6	cell line	sgMsh2	31461720	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	135	0	0	NA	exonic	Slc26a3	nonsynonymous SNV	Slc26a3:NM_021353:exon12:c.G1303A:p.A435T	12qA2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7027834	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	31539283	12A2p6	cell line	sgMsh2	31539283	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	80	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon10:c.T1163C:p.F388S	12qA2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.7025994	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	31708995	12A2p6	cell line	sgMsh2	31708995	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	285	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.G1016T:p.G339V	12qA3	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.466653265	2	1.10E-09	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	32194752	12A2p6	cell line	sgMsh2	32194752	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.083	196	0	0	NA	exonic	Pik3cg	frameshift insertion	"Pik3cg:NM_001146200:exon8:c.2701dupG:p.A901Gfs*4,Pik3cg:NM_001146201:exon8:c.2701dupG:p.A901Gfs*4,Pik3cg:NM_020272:exon8:c.2701dupG:p.A901Gfs*4"	12qA3	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	NA	NA	TGC	frameshift	C	5	CCCCC	1
22-1_par	chr12	36134906	12A2p6	cell line	sgMsh2	36134906	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	162	0	0	NA	exonic	Bzw2	nonsynonymous SNV	Bzw2:NM_025840:exon2:c.A43G:p.K15E	12qA3	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	2	0.8691628	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	40631601	12A2p6	cell line	sgMsh2	40631601	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	242	0	0	NA	exonic	Dock4	nonsynonymous SNV	Dock4:NM_172803:exon5:c.T298C:p.W100R	12qB1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9999985	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	51367890	12A2p6	cell line	sgMsh2	51367890	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	111	0	0	NA	exonic	G2e3	synonymous SNV	"G2e3:NM_001167964:exon11:c.A1146G:p.G382G,G2e3:NM_001015099:exon12:c.A1428G:p.G476G,G2e3:NM_001167963:exon13:c.A1497G:p.G499G"	12qB3	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.572111	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr12	52518559	12A2p6	cell line	sgMsh2	52518559	A	C	SNV	Mutect2;Vardict	2	0.027	299	0	0	NA	exonic	Arhgap5	nonsynonymous SNV	Arhgap5:NM_009706:exon1:c.A2312C:p.K771T	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	1.21E-09	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	53140991	12A2p6	cell line	sgMsh2	53140991	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	207	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T5187C:p.N1729N	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999855	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr12	54898616	12A2p6	cell line	sgMsh2	54898616	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	104	0	0	NA	exonic	Baz1a	nonsynonymous SNV	Baz1a:NM_013815:exon24:c.C3953T:p.A1318V	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	2	0.8654335	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	54930311	12A2p6	cell line	sgMsh2	54930311	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	382	0	0	NA	exonic	Baz1a	nonsynonymous SNV	Baz1a:NM_013815:exon10:c.A1165G:p.M389V	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	54930317	12A2p6	cell line	sgMsh2	54930317	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.021	340	0	0	NA	exonic	Baz1a	nonsynonymous SNV	Baz1a:NM_013815:exon10:c.A1159C:p.K387Q	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.091586155	3	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	61839665	12A2p6	cell line	sgMsh2	61839665	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	178	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon3:c.C238A:p.L80M,Lrfn5:NM_178714:exon3:c.C238A:p.L80M"	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9979361	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	65106395	12A2p6	cell line	sgMsh2	65106395	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	169	0	0	NA	exonic	Fancm	nonsynonymous SNV	"Fancm:NM_001364447:exon14:c.T1401G:p.D467E,Fancm:NM_178912:exon14:c.T3624G:p.D1208E"	12qC1	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9998007	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	69959408	12A2p6	cell line	sgMsh2	69959408	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	182	0	0	NA	exonic	Atl1	nonsynonymous SNV	Atl1:NM_178628:exon13:c.A1487G:p.Y496C	12qC2	chr12-3501831-72893260	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9981848	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	75114285	12A2p6	cell line	sgMsh2	75114285	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	128	0	0	NA	exonic	Kcnh5	nonsynonymous SNV	Kcnh5:NM_172805:exon6:c.T848G:p.L283R	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.8893461	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	75734953	12A2p6	cell line	sgMsh2	75734953	A	G	SNV	Mutect2;Vardict	2	0.051	139	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon1:c.T611C:p.I204T	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.983951	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	75969481	12A2p6	cell line	sgMsh2	75969481	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	141	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon49:c.A9836G:p.N3279S	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.6466595	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	76245063	12A2p6	cell line	sgMsh2	76245063	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	91	0	0	NA	exonic	Tex21	nonsynonymous SNV	"Tex21:NM_001159532:exon2:c.A83G:p.K28R,Tex21:NM_019784:exon2:c.A83G:p.K28R"	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9454304	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	76837520	12A2p6	cell line	sgMsh2	76837520	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	147	0	0	NA	exonic	Fntb	nonsynonymous SNV	Fntb:NM_145927:exon1:c.A13G:p.S5G	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9968454	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	79064220	12A2p6	cell line	sgMsh2	79064220	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	46	0	0	NA	exonic	Plekhh1	synonymous SNV	Plekhh1:NM_181073:exon10:c.T1533A:p.S511S	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.47101451	2	0.9648881	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr12	79803221	12A2p6	cell line	sgMsh2	79803221	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	173	0	0	NA	exonic	Rad51b	nonsynonymous SNV	Rad51b:NM_009014:exon10:c.T989G:p.F330C	12qC3	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9987621	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	85111516	12A2p6	cell line	sgMsh2	85111516	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	215	0	0	NA	exonic	Dlst	synonymous SNV	Dlst:NM_030225:exon2:c.A82C:p.R28R	12qD1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9977996	GAG	synonymous	NA	NA	NA	NA
22-1_par	chr12	85128320	12A2p6	cell line	sgMsh2	85128320	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	160	0	0	NA	exonic	Dlst	nonsynonymous SNV	Dlst:NM_030225:exon11:c.A783T:p.Q261H	12qD1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9873544	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	85917748	12A2p6	cell line	sgMsh2	85917748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	113	0	0	NA	exonic	Ttll5	nonsynonymous SNV	"Ttll5:NM_001364628:exon19:c.T1147C:p.Y383H,Ttll5:NM_001081423:exon20:c.T1663C:p.Y555H,Ttll5:NM_001347395:exon20:c.T1663C:p.Y555H,Ttll5:NM_001364624:exon20:c.T1663C:p.Y555H,Ttll5:NM_001364625:exon20:c.T1663C:p.Y555H,Ttll5:NM_001364626:exon20:c.T1663C:p.Y555H,Ttll5:NM_001364627:exon20:c.T1369C:p.Y457H"	12qD2	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9277408	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	87081875	12A2p6	cell line	sgMsh2	87081875	A	G	SNV	Mutect2;Vardict	2	0.032	159	0	0	NA	exonic	Tmem63c	nonsynonymous SNV	"Tmem63c:NM_001361704:exon19:c.A1673G:p.E558G,Tmem63c:NM_001361705:exon19:c.A1673G:p.E558G,Tmem63c:NM_172583:exon20:c.A1673G:p.E558G"	12qD2	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.9999729	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	100944923	12A2p6	cell line	sgMsh2	100944923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	35	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon15:c.A2651G:p.K884R	12qE	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.898416566	1	0.98028	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	102584389	12A2p6	cell line	sgMsh2	102584389	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	123	0	0	NA	exonic	Itpk1	nonsynonymous SNV	Itpk1:NM_172584:exon7:c.T568A:p.F190I	12qE	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9240598	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	102766312	12A2p6	cell line	sgMsh2	102766312	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	274	0	0	NA	exonic	Ubr7	nonsynonymous SNV	Ubr7:NM_025666:exon6:c.C562T:p.R188C	12qE	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	2	1.78E-08	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	103088630	12A2p6	cell line	sgMsh2	103088630	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	94	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon22:c.C2891T:p.A964V	12qE	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9787863	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	111627484	12A2p6	cell line	sgMsh2	111627485	GA	-	Deletion	Strelka2;Vardict	2	0.1471	34	0	0	NA	exonic	Mark3	frameshift deletion	"Mark3:NM_001370745:exon7:c.336_337del:p.R115Sfs*29,Mark3:NM_001370744:exon9:c.783_784del:p.R264Sfs*29,Mark3:NM_021516:exon9:c.783_784del:p.R264Sfs*29,Mark3:NM_022801:exon9:c.783_784del:p.R264Sfs*29"	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.641539208	NA	NA	TGA	frameshift	GA	11	GAGAGAGAGAG	-2
22-1_par	chr12	111872320	12A2p6	cell line	sgMsh2	111872320	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	203	0	0	NA	exonic	Ppp1r13b	synonymous SNV	Ppp1r13b:NM_011625:exon2:c.C123T:p.G41G	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.392512092	2	0.9999318	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr12	112178159	12A2p6	cell line	sgMsh2	112178159	C	T	SNV	Mutect2;Vardict	2	0.093	52	0	0	NA	exonic	Kif26a	nonsynonymous SNV	Kif26a:NM_001097621:exon12:c.C4846T:p.R1616C	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9181445	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	113188759	12A2p6	cell line	sgMsh2	113188759	T	G	SNV	Mutect2;Vardict	2	0.075	66	0	0	NA	exonic	Tmem121	nonsynonymous SNV	Tmem121:NM_153776:exon2:c.T596G:p.L199R	12qF1	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.7080791	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr12	116440081	12A2p6	cell line	sgMsh2	116440081	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	153	0	0	NA	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon22:c.T2612C:p.V871A	12qF2	chr12-72912890-119465464	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.8870075	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	21444940	12A2p6	cell line	sgMsh2	21444940	T	C	SNV	Mutect2;Vardict	2	0.036	272	0	0	NA	exonic	Zscan26	synonymous SNV	"Zscan26:NM_001013786:exon4:c.A1014G:p.K338K,Zscan26:NM_001347491:exon6:c.A1392G:p.K464K"	13qA3.1	chr13-3556297-23486731	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999998	GTT	synonymous	NA	NA	NA	NA
22-1_par	chr13	22441548	12A2p6	cell line	sgMsh2	22441548	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	380	0	0	NA	exonic	Vmn1r-ps103	synonymous SNV	Vmn1r-ps103:NM_134211:exon1:c.T277C:p.L93L	13qA3.1	chr13-3556297-23486731	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	1.44E-09	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr13	23357556	12A2p6	cell line	sgMsh2	23357556	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	111	0	0	NA	exonic	Zfp322a	synonymous SNV	"Zfp322a:NM_001286156:exon4:c.A15G:p.L5L,Zfp322a:NM_172586:exon4:c.A15G:p.L5L,Zfp322a:NM_001111107:exon5:c.A15G:p.L5L,Zfp322a:NM_001286155:exon5:c.A15G:p.L5L"	13qA3.1	chr13-3556297-23486731	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.9877674	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr13	32848672	12A2p6	cell line	sgMsh2	32848672	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	616	0	0	NA	exonic	Serpinb1a	nonsynonymous SNV	Serpinb1a:NM_025429:exon3:c.A253G:p.T85A	13qA3.2	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	1	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	34166086	12A2p6	cell line	sgMsh2	34166086	T	-	Deletion	Mutect2;Vardict	2	0.04	265	0	0	NA	exonic	Psmg4	frameshift deletion	Psmg4:NM_001101430:exon2:c.200delT:p.F68Lfs*15	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	NA	NA	CTT	frameshift	T	5	TTTTT	-1
22-1_par	chr13	38192840	12A2p6	cell line	sgMsh2	38192840	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	127	0	0	NA	exonic	Dsp	nonsynonymous SNV	Dsp:NM_023842:exon23:c.A4600G:p.T1534A	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9781185	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	42158570	12A2p6	cell line	sgMsh2	42158571	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.074	97	0	0	NA	exonic	Hivep1	frameshift deletion	Hivep1:NM_007772:exon4:c.4285_4286del:p.P1431Wfs*12	13qA4	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	NA	NA	CCT	frameshift	NA	NA	NA	-2
22-1_par	chr13	42160163	12A2p6	cell line	sgMsh2	42160163	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	190	0	0	NA	exonic	Hivep1	nonsynonymous SNV	Hivep1:NM_007772:exon4:c.A5878T:p.N1960Y	13qA4	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9998941	TAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	50703131	12A2p6	cell line	sgMsh2	50703131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	227	0	0	NA	exonic	Gm8765	nonsynonymous SNV	Gm8765:NM_001244649:exon4:c.A2804T:p.K935I	13qA5	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	2	4.40E-08	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	54995827	12A2p6	cell line	sgMsh2	54995827	T	C	SNV	Mutect2;Vardict	2	0.042	132	0	0	NA	exonic	Unc5a	nonsynonymous SNV	"Unc5a:NM_001311128:exon3:c.T323C:p.V108A,Unc5a:NM_153131:exon3:c.T323C:p.V108A"	13qB1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9980572	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	58610716	12A2p6	cell line	sgMsh2	58610716	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.178	60	0	0	NA	exonic	Slc28a3	nonsynonymous SNV	Slc28a3:NM_022317:exon1:c.G92A:p.R31H	13qB1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.776301693	1	0.9757131	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	59727948	12A2p6	cell line	sgMsh2	59727948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.548	84	0	0	NA	exonic	Spata31d1d	nonsynonymous SNV	Spata31d1d:NM_177711:exon4:c.A1772G:p.Q591R	13qB2	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	61250985	12A2p6	cell line	sgMsh2	61250985	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	265	0	0	NA	exonic	Cts8	nonsynonymous SNV	Cts8:NM_019541:exon6:c.A706T:p.M236L	13qB2	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.997437	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	65066660	12A2p6	cell line	sgMsh2	65066660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	148	0	0	NA	exonic	Mfsd14b	nonsynonymous SNV	"Mfsd14b:NM_133680:exon12:c.T1477C:p.W493R,Mfsd14b:NM_001083901:exon13:c.T1477C:p.W493R"	13qB3	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	2	0.9999221	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	66900803	12A2p6	cell line	sgMsh2	66900803	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	188	0	0	NA	exonic	Uqcrb	stopgain	Uqcrb:NM_026219:exon4:c.T282G:p.Y94X	13qB3	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9999522	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	74207060	12A2p6	cell line	sgMsh2	74207060	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	191	0	0	NA	exonic	Exoc3	synonymous SNV	Exoc3:NM_177333:exon2:c.C21T:p.C7C	13qC1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.9251089	AGC	synonymous	GCAG	8	GCAGGCAG	NA
22-1_par	chr13	92522565	12A2p6	cell line	sgMsh2	92522565	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	180	0	0	NA	exonic	Zfyve16	synonymous SNV	Zfyve16:NM_173392:exon3:c.T837G:p.A279A	13qC3	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9567019	CAG	synonymous	NA	NA	NA	NA
22-1_par	chr13	97175000	12A2p6	cell line	sgMsh2	97175000	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	265	0	0	NA	exonic	Gfm2	nonsynonymous SNV	"Gfm2:NM_001271464:exon19:c.G2077A:p.D693N,Gfm2:NM_001146043:exon20:c.G2158A:p.D720N,Gfm2:NM_001271463:exon20:c.G2158A:p.D720N,Gfm2:NM_001271465:exon20:c.G2152A:p.D718N,Gfm2:NM_177266:exon20:c.G2158A:p.D720N"	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999966	AGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	98984145	12A2p6	cell line	sgMsh2	98984145	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	257	0	0	NA	exonic	H2bl1	stoploss	H2bl1:NM_027064:exon1:c.A372C:p.X124Y	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.6841553	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	100806626	12A2p6	cell line	sgMsh2	100806626	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	314	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon14:c.A1894T:p.S632C	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.999952	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr13	104217193	12A2p6	cell line	sgMsh2	104217193	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	340	0	0	NA	exonic	Ppwd1	synonymous SNV	Ppwd1:NM_172807:exon6:c.A1056G:p.K352K	13qD1	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.100308646	3	1.00E-09	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr13	115007000	12A2p6	cell line	sgMsh2	115007000	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	285	0	0	NA	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon9:c.A994G:p.S332G	13qD2.2	chr13-23782291-119495179	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9997994	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	3072172	12A2p6	cell line	sgMsh2	3072172	T	A	SNV	Mutect2;Vardict	2	0.052	370	0	0	NA	exonic	Gm2897	synonymous SNV	Gm2897:NM_001177715:exon6:c.T417A:p.S139S	14qA1	chr14-3072172-6411883	2.42508405	1.42508405	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9999235	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr14	8039749	12A2p6	cell line	sgMsh2	8039749	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	257	0	0	NA	exonic	Abhd6	nonsynonymous SNV	"Abhd6:NM_001331064:exon3:c.T121C:p.Y41H,Abhd6:NM_025341:exon3:c.T121C:p.Y41H"	14qA1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.99994	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	19812224	12A2p6	cell line	sgMsh2	19812224	A	G	SNV	Mutect2;Vardict	2	0.069	126	0	0	NA	exonic	Rtraf	synonymous SNV	Rtraf:NM_026528:exon8:c.T594C:p.N198N	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.6539351	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr14	20144688	12A2p6	cell line	sgMsh2	20144688	A	T	SNV	Mutect2;Vardict	2	0.037	145	0	0	NA	exonic	Kcnk5	nonsynonymous SNV	Kcnk5:NM_021542:exon4:c.T581A:p.L194H	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9997312	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	20682689	12A2p6	cell line	sgMsh2	20682689	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	96	0	0	NA	exonic	Sec24c	nonsynonymous SNV	"Sec24c:NM_001168273:exon4:c.T319G:p.S107A,Sec24c:NM_172596:exon4:c.T319G:p.S107A"	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.8664092	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	20722549	12A2p6	cell line	sgMsh2	20722549	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	70	0	0	NA	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon24:c.A5065G:p.K1689E,Zswim8:NM_027996:exon24:c.A5086G:p.K1696E,Zswim8:NM_001252082:exon25:c.A4984G:p.K1662E"	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.575684402	2	0.9672197	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	20724306	12A2p6	cell line	sgMsh2	20724306	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	80	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon15:c.C2581A:p.L861M	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.501543229	2	0.9984822	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	21031636	12A2p6	cell line	sgMsh2	21031636	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	64	0	0	NA	exonic	Vcl	nonsynonymous SNV	Vcl:NM_009502:exon21:c.A3104C:p.K1035T	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.492820738	2	0.9943007	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	24136586	12A2p6	cell line	sgMsh2	24136586	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	314	0	0	NA	exonic	Dlg5	nonsynonymous SNV	"Dlg5:NM_027726:exon30:c.A5576G:p.Y1859C,Dlg5:NM_001163513:exon31:c.A5645G:p.Y1882C"	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.999952	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	26612015	12A2p6	cell line	sgMsh2	26612015	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.019	394	0	0	NA	exonic	Dennd6a	synonymous SNV	"Dennd6a:NM_001285466:exon10:c.A405G:p.L135L,Dennd6a:NM_001134465:exon12:c.A1077G:p.L359L,Dennd6a:NM_001285467:exon12:c.A405G:p.L135L,Dennd6a:NM_145969:exon12:c.A1077G:p.L359L"	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.082863664	3	1	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr14	27500372	12A2p6	cell line	sgMsh2	27500372	T	-	Deletion	Strelka2;Vardict	2	0.1346	52	0	0	NA	exonic	Ccdc66	frameshift deletion	Ccdc66:NM_177111:exon4:c.413delA:p.N138Tfs*6	14qA3	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.58702364	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
22-1_par	chr14	31015311	12A2p6	cell line	sgMsh2	31015311	T	-	Deletion	Mutect2;Vardict	2	0.05	282	0	0	NA	exonic	Gnl3	frameshift deletion	Gnl3:NM_153547:exon7:c.609delA:p.A204Pfs*4	14qB	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-1_par	chr14	45469261	12A2p6	cell line	sgMsh2	45469261	G	A	SNV	Mutect2;Vardict	2	0.033	165	0	0	NA	exonic	Fermt2	synonymous SNV	"Fermt2:NM_001360526:exon8:c.C1077T:p.G359G,Fermt2:NM_146054:exon8:c.C1077T:p.G359G,Fermt2:NM_001360525:exon9:c.C1110T:p.G370G"	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	0.9999745	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr14	49245194	12A2p6	cell line	sgMsh2	49245194	C	A	SNV	Mutect2;Strelka2	2	0.1	59	0	0	NA	exonic	ccdc198	stopgain	ccdc198:NM_025956:exon2:c.G64T:p.E22X	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.436124547	2	0.9733113	TCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	50486117	12A2p6	cell line	sgMsh2	50486117	G	T	SNV	Mutect2;Vardict	2	0.037	269	0	0	NA	exonic	Olfr741	stopgain	Olfr741:NM_207133:exon3:c.G658T:p.G220X	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9999996	GGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	50515857	12A2p6	cell line	sgMsh2	50515857	A	G	SNV	Mutect2;MuSe;Vardict	3	0.068	292	0	0	NA	exonic	Olfr742	nonsynonymous SNV	Olfr742:NM_146430:exon1:c.A652G:p.I218V	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.8187822	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	50777380	12A2p6	cell line	sgMsh2	50777380	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	387	0	0	NA	exonic	Ttc5	nonsynonymous SNV	Ttc5:NM_001360545:exon4:c.C77A:p.P26Q	14qC1	chr14-6587069-53079320	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	2	0.9999969	TGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	54367031	12A2p6	cell line	sgMsh2	54367031	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	237	0	0	NA	exonic	Oxa1l	nonsynonymous SNV	Oxa1l:NM_026936:exon5:c.A575G:p.K192R	14qC2	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9999981	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	54958710	12A2p6	cell line	sgMsh2	54958710	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	157	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon15:c.C1631T:p.A544V,Myh6:NM_010856:exon15:c.C1631T:p.A544V"	14qC3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	2	0.9544434	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	56902788	12A2p6	cell line	sgMsh2	56902788	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	213	0	0	NA	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon3:c.T83G:p.L28R,Zmym2:NM_029498:exon3:c.T83G:p.L28R,Zmym2:NM_177627:exon3:c.T83G:p.L28R"	14qC3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.999872	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	61211277	12A2p6	cell line	sgMsh2	61211277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	158	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A10771G:p.I3591V	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	0.9865251	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	61214123	12A2p6	cell line	sgMsh2	61214123	A	-	Deletion	Mutect2;Vardict	2	0.025	299	0	0	NA	exonic	Sacs	frameshift deletion	Sacs:NM_015788:exon10:c.13617delA:p.R4540Gfs*21	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.109031137	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-1_par	chr14	62708958	12A2p6	cell line	sgMsh2	62708958	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	423	0	0	NA	exonic	Ints6	synonymous SNV	Ints6:NM_008715:exon9:c.T1113C:p.S371S	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	3.02E-08	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr14	66638002	12A2p6	cell line	sgMsh2	66638002	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	30	0	0	NA	exonic	Adra1a	frameshift deletion	"Adra1a:NM_001271759:exon2:c.425delG:p.G143Afs*54,Adra1a:NM_001271760:exon2:c.425delG:p.G143Afs*54,Adra1a:NM_001271761:exon2:c.425delG:p.G143Afs*54,Adra1a:NM_013461:exon2:c.425delG:p.G143Afs*54"	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.802469166	NA	NA	AGG	frameshift	NA	NA	NA	-1
22-1_par	chr14	67734207	12A2p6	cell line	sgMsh2	67734207	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	136	0	0	NA	exonic	Kctd9	nonsynonymous SNV	"Kctd9:NM_001111028:exon9:c.A730G:p.N244D,Kctd9:NM_001285933:exon9:c.A388G:p.N130D"	14qD1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8398246	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	69718585	12A2p6	cell line	sgMsh2	69718585	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	263	0	0	NA	exonic	Chmp7	synonymous SNV	Chmp7:NM_134078:exon9:c.T1233C:p.S411S	14qD2	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	0.9999998	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr14	70521425	12A2p6	cell line	sgMsh2	70521425	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	204	0	0	NA	exonic	Sftpc	synonymous SNV	Sftpc:NM_011359:exon5:c.T483C:p.H161H	14qD2	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9858055	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr14	72563513	12A2p6	cell line	sgMsh2	72563513	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	357	0	0	NA	exonic	Fndc3a	nonsynonymous SNV	Fndc3a:NM_207636:exon16:c.A1796G:p.Y599C	14qD2	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	2.58E-09	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	75270794	12A2p6	cell line	sgMsh2	75270794	A	-	Deletion	Mutect2;Vardict	2	0.051	240	0	0	NA	exonic	Cpb2	frameshift deletion	Cpb2:NM_019775:exon7:c.694delA:p.K233Rfs*20	14qD3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	NA	NA	GAA	frameshift	A	5	AAAAA	-1
22-1_par	chr14	75339345	12A2p6	cell line	sgMsh2	75339345	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	192	0	0	NA	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon18:c.T4895G:p.L1632R,Zc3h13:NM_026083:exon18:c.T4892G:p.L1631R"	14qD3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9998597	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	75707958	12A2p6	cell line	sgMsh2	75707958	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	164	0	0	NA	exonic	Cog3	nonsynonymous SNV	Cog3:NM_177381:exon21:c.T2322A:p.N774K	14qD3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9967661	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	79768176	12A2p6	cell line	sgMsh2	79768176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	171	0	0	NA	exonic	Pcdh8	nonsynonymous SNV	"Pcdh8:NM_001042726:exon2:c.A2480G:p.N827S,Pcdh8:NM_021543:exon2:c.A2771G:p.N924S"	14qD3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.532071947	2	0.9999621	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr14	88468441	12A2p6	cell line	sgMsh2	88468441	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	114	0	0	NA	exonic	Pcdh20	synonymous SNV	Pcdh20:NM_178685:exon3:c.G1422A:p.G474G	14qE1	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9289746	GCC	synonymous	NA	NA	NA	NA
22-1_par	chr14	100022714	12A2p6	cell line	sgMsh2	100022714	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	276	0	0	NA	exonic	Klf12	nonsynonymous SNV	Klf12:NM_010636:exon3:c.T578C:p.V193A	14qE2.3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999979	CAC	nonsynonymous	ACTG	8	ACTGACTG	NA
22-1_par	chr14	101444630	12A2p6	cell line	sgMsh2	101444630	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	156	0	0	NA	exonic	Tbc1d4	synonymous SNV	Tbc1d4:NM_001081278:exon19:c.C3640T:p.L1214L	14qE2.3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9198391	AGC	synonymous	NA	NA	NA	NA
22-1_par	chr14	103295228	12A2p6	cell line	sgMsh2	103295228	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	174	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon8:c.A1289G:p.N430S	14qE2.3	chr14-53294676-123291781	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9991483	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	4909046	12A2p6	cell line	sgMsh2	4909046	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	163	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon8:c.C816T:p.V272V	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.505904474	2	0.9999948	TCC	synonymous	NA	NA	NA	NA
22-1_par	chr15	4951138	12A2p6	cell line	sgMsh2	4951138	A	T	SNV	Mutect2;Vardict	2	0.037	156	0	0	NA	exonic	Mroh2b	nonsynonymous SNV	Mroh2b:NM_001166066:exon38:c.A4188T:p.Q1396H	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9998508	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	8212426	12A2p6	cell line	sgMsh2	8212426	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	343	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon23:c.C3842T:p.S1281L	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999999	TCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	9687915	12A2p6	cell line	sgMsh2	9687915	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	112	0	0	NA	exonic	Spef2	synonymous SNV	"Spef2:NM_177123:exon10:c.C1419T:p.S473S,Spef2:NM_001305042:exon11:c.C1590T:p.S530S"	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.9580465	TGC	synonymous	NA	NA	NA	NA
22-1_par	chr15	10328373	12A2p6	cell line	sgMsh2	10328373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	193	0	0	NA	exonic	Prlr	synonymous SNV	Prlr:NM_011169:exon10:c.A933G:p.E311E	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9960798	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr15	10574437	12A2p6	cell line	sgMsh2	10574437	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	199	0	0	NA	exonic	Rai14	nonsynonymous SNV	"Rai14:NM_001356534:exon14:c.T2434G:p.L812V,Rai14:NM_001166408:exon15:c.T2521G:p.L841V,Rai14:NM_030690:exon15:c.T2521G:p.L841V"	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9893848	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	12373682	12A2p6	cell line	sgMsh2	12373682	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	76	0	0	NA	exonic	Pdzd2	frameshift deletion	Pdzd2:NM_001081064:exon21:c.6366delC:p.S2123Pfs*32	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.680354293	NA	NA	AGG	frameshift	GGA	17	GGAGGGGGAGGAGGAGG	-1
22-1_par	chr15	12924088	12A2p6	cell line	sgMsh2	12924088	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	265	0	0	NA	exonic	Drosha	synonymous SNV	"Drosha:NM_001130149:exon30:c.G3555A:p.T1185T,Drosha:NM_026799:exon30:c.G3555A:p.T1185T"	15qA1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.51026572	2	1.39E-08	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr15	18985250	12A2p6	cell line	sgMsh2	18985250	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	305	0	0	NA	exonic	Cdh10	nonsynonymous SNV	"Cdh10:NM_001316758:exon6:c.A999C:p.K333N,Cdh10:NM_009865:exon6:c.A999C:p.K333N"	15qA2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9999998	AAA	nonsynonymous	A	5	AAAAA	NA
22-1_par	chr15	27735539	12A2p6	cell line	sgMsh2	27735539	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	201	0	0	NA	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon55:c.A8464G:p.T2822A	15qB1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9968219	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	27871292	12A2p6	cell line	sgMsh2	27871292	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	66	0	0	NA	exonic	Trio	frameshift deletion	Trio:NM_001081302:exon11:c.1915delG:p.E639Nfs*41	15qB1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	NA	NA	TCC	frameshift	C	5	CCCCC	-1
22-1_par	chr15	28233190	12A2p6	cell line	sgMsh2	28233190	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	85	0	0	NA	exonic	Dnah5	stopgain	Dnah5:NM_133365:exon6:c.A694T:p.K232X	15qB1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.344538392	2	0.8736506	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	30683274	12A2p6	cell line	sgMsh2	30683274	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.147	42	0	0	NA	exonic	Ctnnd2	nonsynonymous SNV	"Ctnnd2:NM_001355502:exon9:c.C1420A:p.P474T,Ctnnd2:NM_008729:exon9:c.C1420A:p.P474T"	15qB2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.641103084	2	0.7530739	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	36221488	12A2p6	cell line	sgMsh2	36221488	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	175	0	0	NA	exonic	Spag1	nonsynonymous SNV	"Spag1:NM_001359980:exon14:c.C1726G:p.P576A,Spag1:NM_001359984:exon14:c.C1762G:p.P588A,Spag1:NM_012031:exon14:c.C1726G:p.P576A,Spag1:NM_001359982:exon15:c.C1762G:p.P588A,Spag1:NM_001359981:exon16:c.C1762G:p.P588A,Spag1:NM_001359983:exon16:c.C1027G:p.P343A"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9535614	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	44584923	12A2p6	cell line	sgMsh2	44584923	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	311	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon71:c.G11497A:p.G3833R	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999986	CGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	53089983	12A2p6	cell line	sgMsh2	53089983	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	113	0	0	NA	exonic	Ext1	nonsynonymous SNV	Ext1:NM_010162:exon6:c.A1484T:p.Q495L	15qC	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9277408	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
22-1_par	chr15	55086833	12A2p6	cell line	sgMsh2	55086833	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	338	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon4:c.A515C:p.E172A,Dscc1:NM_183089:exon4:c.A515C:p.E172A"	15qD1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	57949018	12A2p6	cell line	sgMsh2	57949018	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	229	0	0	NA	exonic	Tbc1d31	nonsynonymous SNV	"Tbc1d31:NM_001356310:exon10:c.T1251G:p.F417L,Tbc1d31:NM_001081396:exon11:c.T1506G:p.F502L,Tbc1d31:NM_001167679:exon11:c.T1506G:p.F502L"	15qD1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	5.07E-09	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	66597751	12A2p6	cell line	sgMsh2	66597751	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	106	0	0	NA	exonic	Phf20l1	synonymous SNV	Phf20l1:NM_001081409:exon6:c.T504C:p.S168S	15qD2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8009229	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr15	68178918	12A2p6	cell line	sgMsh2	68178918	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	61	0	0	NA	exonic	Zfat	nonsynonymous SNV	"Zfat:NM_001145888:exon7:c.T2253G:p.H751Q,Zfat:NM_198644:exon7:c.T2232G:p.H744Q"	15qD2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	2	0.9791564	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	74571462	12A2p6	cell line	sgMsh2	74571462	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	341	0	0	NA	exonic	Adgrb1	nonsynonymous SNV	"Adgrb1:NM_001359759:exon20:c.A1042G:p.I348V,Adgrb1:NM_174991:exon20:c.A2971G:p.I991V"	15qD3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.999699	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	76249244	12A2p6	cell line	sgMsh2	76249244	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	238	0	0	NA	exonic	Grina	nonsynonymous SNV	Grina:NM_023168:exon7:c.C916A:p.L306M	15qD3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9969722	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	76614621	12A2p6	cell line	sgMsh2	76614621	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	141	0	0	NA	exonic	Slc39a4	nonsynonymous SNV	Slc39a4:NM_028064:exon5:c.G872T:p.G291V	15qD3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9739223	CCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	79289668	12A2p6	cell line	sgMsh2	79289668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	80	0	0	NA	exonic	Pla2g6	nonsynonymous SNV	"Pla2g6:NM_001199024:exon12:c.A1628G:p.H543R,Pla2g6:NM_016915:exon12:c.A1628G:p.H543R,Pla2g6:NM_001199023:exon13:c.A1793G:p.H598R,Pla2g6:NM_001199025:exon13:c.A1628G:p.H543R"	15qE1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.466653265	2	0.9976833	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	79429785	12A2p6	cell line	sgMsh2	79429785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	74	0	0	NA	exonic	Csnk1e	nonsynonymous SNV	"Csnk1e:NM_001289898:exon4:c.G263A:p.S88N,Csnk1e:NM_001289899:exon4:c.G263A:p.S88N,Csnk1e:NM_001359862:exon4:c.G263A:p.S88N,Csnk1e:NM_001359863:exon4:c.G263A:p.S88N,Csnk1e:NM_013767:exon4:c.G263A:p.S88N"	15qE1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.501543229	2	0.9975416	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	80883083	12A2p6	cell line	sgMsh2	80883083	T	C	SNV	Mutect2;Vardict	2	0.039	154	0	0	NA	exonic	Tnrc6b	synonymous SNV	"Tnrc6b:NM_177124:exon6:c.T2940C:p.A980A,Tnrc6b:NM_144812:exon9:c.T3048C:p.A1016A"	15qE1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9996978	CTC	synonymous	NA	NA	NA	NA
22-1_par	chr15	82037508	12A2p6	cell line	sgMsh2	82037508	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	144	0	0	NA	exonic	Xrcc6	nonsynonymous SNV	Xrcc6:NM_010247:exon12:c.T1568G:p.F523C	15qE1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.762701	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	84018698	12A2p6	cell line	sgMsh2	84018698	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	473	0	0	NA	exonic	Efcab6	synonymous SNV	Efcab6:NM_029946:exon5:c.T450C:p.G150G	15qE2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.418679565	2	1.00E-09	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr15	85114786	12A2p6	cell line	sgMsh2	85114786	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	168	0	0	NA	exonic	Smc1b	nonsynonymous SNV	Smc1b:NM_080470:exon9:c.A1438C:p.I480L	15qE2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.475375756	2	0.999999	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	88601011	12A2p6	cell line	sgMsh2	88601011	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	334	0	0	NA	exonic	Zdhhc25	nonsynonymous SNV	Zdhhc25:NM_027306:exon1:c.G548T:p.G183V	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	1.58E-08	GGC	nonsynonymous	GCGAG	10	GCGAGGCGAG	NA
22-1_par	chr15	88811431	12A2p6	cell line	sgMsh2	88811431	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	92	0	0	NA	exonic	Alg12	synonymous SNV	Alg12:NM_001142357:exon7:c.G861A:p.R287R	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.8095927	TCC	synonymous	NA	NA	NA	NA
22-1_par	chr15	89305173	12A2p6	cell line	sgMsh2	89305173	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	190	0	0	NA	exonic	Sbf1	nonsynonymous SNV	"Sbf1:NM_001081030:exon13:c.T1421C:p.L474P,Sbf1:NM_001170561:exon13:c.T1421C:p.L474P"	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9816732	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	89336814	12A2p6	cell line	sgMsh2	89336814	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	147	0	0	NA	exonic	Miox	nonsynonymous SNV	Miox:NM_019977:exon10:c.T824G:p.I275S	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7102353	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	91149194	12A2p6	cell line	sgMsh2	91149194	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	121	0	0	NA	exonic	Abcd2	nonsynonymous SNV	"Abcd2:NM_001358967:exon10:c.C2015G:p.T672S,Abcd2:NM_011994:exon10:c.C2018G:p.T673S"	15qE3	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7433747	AGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	96370033	12A2p6	cell line	sgMsh2	96370033	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	242	0	0	NA	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon15:c.A2026G:p.T676A	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999843	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	96415901	12A2p6	cell line	sgMsh2	96415901	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	114	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon13:c.T3998C:p.V1333A	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9532196	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	97758849	12A2p6	cell line	sgMsh2	97758849	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	170	0	0	NA	exonic	Rapgef3	nonsynonymous SNV	"Rapgef3:NM_001177810:exon10:c.T1034C:p.I345T,Rapgef3:NM_001177811:exon10:c.T1034C:p.I345T,Rapgef3:NM_001357630:exon10:c.T1034C:p.I345T,Rapgef3:NM_144850:exon10:c.T1034C:p.I345T"	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.009936459	GAT	nonsynonymous	TGA	8	TGATGATG	NA
22-1_par	chr15	97994908	12A2p6	cell line	sgMsh2	97994908	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	182	0	0	NA	exonic	Col2a1	nonsynonymous SNV	"Col2a1:NM_001113515:exon13:c.T680C:p.L227P,Col2a1:NM_031163:exon14:c.T884C:p.L295P"	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9995587	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	98724510	12A2p6	cell line	sgMsh2	98724510	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	83	0	0	NA	exonic	Fkbp11	nonsynonymous SNV	"Fkbp11:NM_001357893:exon5:c.G295A:p.G99S,Fkbp11:NM_024169:exon6:c.G481A:p.G161S"	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9885539	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	99056902	12A2p6	cell line	sgMsh2	99056902	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	241	0	0	NA	exonic	Prph	nonsynonymous SNV	"Prph:NM_001163588:exon4:c.A848T:p.N283I,Prph:NM_001163589:exon4:c.A848T:p.N283I,Prph:NM_013639:exon4:c.A848T:p.N283I"	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9999582	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	100335284	12A2p6	cell line	sgMsh2	100335284	T	C	SNV	Mutect2;Vardict	2	0.062	149	0	0	NA	exonic	Mettl7a3	nonsynonymous SNV	Mettl7a3:NM_001081471:exon1:c.T355C:p.F119L	15qF1	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7671418	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	101462596	12A2p6	cell line	sgMsh2	101462596	T	G	SNV	Mutect2;MuSe;Vardict	3	0.083	159	0	0	NA	exonic	Krt81	nonsynonymous SNV	Krt81:NM_001166157:exon2:c.A509C:p.E170A	15qF2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.9947847	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr15	101849047	12A2p6	cell line	sgMsh2	101849047	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	212	0	0	NA	exonic	Krt1	nonsynonymous SNV	Krt1:NM_008473:exon2:c.A727G:p.I243V	15qF2	chr15-3279130-102454328	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	0.9999997	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	3712996	12A2p6	cell line	sgMsh2	3712996	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	88	0	0	NA	exonic	Mefv	synonymous SNV	"Mefv:NM_001161790:exon4:c.C1621T:p.L541L,Mefv:NM_001161791:exon4:c.C1531T:p.L511L,Mefv:NM_019453:exon4:c.C1531T:p.L511L"	16qA1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AGC	synonymous	NA	NA	NA	NA
22-1_par	chr16	5216072	12A2p6	cell line	sgMsh2	5216072	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	272	0	0	NA	exonic	AU021092	nonsynonymous SNV	AU021092:NM_001033220:exon5:c.A656G:p.Y219C	16qA1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9999794	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	13125348	12A2p6	cell line	sgMsh2	13125348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	161	0	0	NA	exonic	Ercc4	nonsynonymous SNV	Ercc4:NM_015769:exon5:c.A890G:p.Y297C	16qA1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9690195	TAT	nonsynonymous	TC	8	TCTCTCTC	NA
22-1_par	chr16	16829088	12A2p6	cell line	sgMsh2	16829088	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	178	0	0	NA	exonic	Spag6l	nonsynonymous SNV	Spag6l:NM_015773:exon2:c.C53T:p.T18M	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.776301693	1	0.9999993	CGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	17211046	12A2p6	cell line	sgMsh2	17211046	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	116	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.T2333C:p.V778A	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.6907617	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	17317328	12A2p6	cell line	sgMsh2	17317328	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	351	0	0	NA	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon26:c.A2861C:p.D954A,Pi4ka:NM_001373955:exon26:c.A3044C:p.D1015A"	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	17525311	12A2p6	cell line	sgMsh2	17525311	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	270	0	0	NA	exonic	Lztr1	synonymous SNV	"Lztr1:NM_001331226:exon19:c.A2022C:p.L674L,Lztr1:NM_001331227:exon19:c.A1575C:p.L525L,Lztr1:NM_025808:exon19:c.A2283C:p.L761L"	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9998927	TAG	synonymous	NA	NA	NA	NA
22-1_par	chr16	17895029	12A2p6	cell line	sgMsh2	17895029	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	118	0	0	NA	exonic	Tssk1	nonsynonymous SNV	Tssk1:NM_009435:exon1:c.G677A:p.R226H	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.70216052	1	0.9793875	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	18949190	12A2p6	cell line	sgMsh2	18949190	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	172	0	0	NA	exonic	Hira	frameshift deletion	Hira:NM_010435:exon18:c.2134delG:p.I714fs*0	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.540794438	NA	NA	TGG	frameshift	G	5	GGGGG	-1
22-1_par	chr16	19566340	12A2p6	cell line	sgMsh2	19566340	A	G	SNV	Mutect2;Vardict	2	0.042	336	0	0	NA	exonic	Olfr169	nonsynonymous SNV	Olfr169:NM_001011855:exon1:c.T542C:p.V181A	16qA3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	22951181	12A2p6	cell line	sgMsh2	22951181	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	155	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon1:c.T59G:p.L20R	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	1	0.9998802	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	23612925	12A2p6	cell line	sgMsh2	23612925	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	241	0	0	NA	exonic	Rtp4	nonsynonymous SNV	Rtp4:NM_023386:exon2:c.T206C:p.V69A	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9997274	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	24608205	12A2p6	cell line	sgMsh2	24608205	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	114	0	0	NA	exonic	Lpp	synonymous SNV	"Lpp:NM_001145952:exon4:c.T81C:p.H27H,Lpp:NM_178665:exon5:c.T81C:p.H27H"	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.893567	ATT	synonymous	NA	NA	NA	NA
22-1_par	chr16	25968735	12A2p6	cell line	sgMsh2	25968735	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	421	0	0	NA	exonic	P3h2	synonymous SNV	P3h2:NM_173379:exon13:c.C1872T:p.T624T	16qB1	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.47101451	2	1.00E-09	CGG	synonymous	NA	NA	NA	NA
22-1_par	chr16	29618128	12A2p6	cell line	sgMsh2	29618128	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	227	0	0	NA	exonic	Opa1	synonymous SNV	"Opa1:NM_133752:exon20:c.A1854G:p.E618E,Opa1:NM_001199177:exon21:c.A1908G:p.E636E"	16qB2	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999529	AAA	synonymous	NA	NA	NA	NA
22-1_par	chr16	30567777	12A2p6	cell line	sgMsh2	30567777	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	162	0	0	NA	exonic	Lsg1	nonsynonymous SNV	Lsg1:NM_178069:exon11:c.A1435C:p.K479Q	16qB2	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.9974991	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	32843488	12A2p6	cell line	sgMsh2	32843488	T	G	SNV	Mutect2;Vardict	2	0.089	60	0	0	NA	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon7:c.A777C:p.Q259H,Rubcn:NM_001374776:exon7:c.A594C:p.Q198H,Rubcn:NM_172615:exon7:c.A777C:p.Q259H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	2	0.9165671	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	36915081	12A2p6	cell line	sgMsh2	36915081	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	95	0	0	NA	exonic	Golgb1	synonymous SNV	Golgb1:NM_030035:exon13:c.C4812T:p.Y1604Y	16qB3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.745772975	1	0.9942012	ACG	synonymous	NA	NA	NA	NA
22-1_par	chr16	36925778	12A2p6	cell line	sgMsh2	36925778	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	84	0	0	NA	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon16:c.G8841T:p.K2947N	16qB3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.684715538	1	8.37E-08	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	37822659	12A2p6	cell line	sgMsh2	37822659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	134	0	0	NA	exonic	Fstl1	synonymous SNV	Fstl1:NM_008047:exon6:c.A384G:p.E128E	16qB3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	2	0.9261953	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr16	42134417	12A2p6	cell line	sgMsh2	42134417	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	180	0	0	NA	exonic	Lsamp	nonsynonymous SNV	"Lsamp:NM_001347236:exon4:c.A626G:p.K209R,Lsamp:NM_001361281:exon6:c.A677G:p.K226R,Lsamp:NM_001361282:exon6:c.A677G:p.K226R"	16qB4	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9889629	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	44111583	12A2p6	cell line	sgMsh2	44111583	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	74	0	0	NA	exonic	Atp6v1a	nonsynonymous SNV	"Atp6v1a:NM_001358203:exon4:c.A341T:p.Q114L,Atp6v1a:NM_001358204:exon4:c.A341T:p.Q114L,Atp6v1a:NM_007508:exon4:c.A341T:p.Q114L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.9661231	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	44740076	12A2p6	cell line	sgMsh2	44740076	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	133	0	0	NA	exonic	Gtpbp8	nonsynonymous SNV	"Gtpbp8:NM_001356392:exon4:c.T642G:p.F214L,Gtpbp8:NM_001159329:exon5:c.T540G:p.F180L,Gtpbp8:NM_025332:exon5:c.T741G:p.F247L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	2	0.8797593	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	58999745	12A2p6	cell line	sgMsh2	58999745	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	308	0	0	NA	exonic	Olfr183	nonsynonymous SNV	Olfr183:NM_146485:exon2:c.T59C:p.L20P	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	4.97E-09	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	62811917	12A2p6	cell line	sgMsh2	62811917	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	250	0	0	NA	exonic	Arl13b	nonsynonymous SNV	Arl13b:NM_026577:exon5:c.A621C:p.E207D	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9840419	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	62903584	12A2p6	cell line	sgMsh2	62903584	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	156	0	0	NA	exonic	Pros1	nonsynonymous SNV	Pros1:NM_011173:exon7:c.T694A:p.Y232N	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9993205	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	63598300	12A2p6	cell line	sgMsh2	63598300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	184	0	0	NA	exonic	Epha3	nonsynonymous SNV	"Epha3:NM_001362452:exon10:c.T1778C:p.L593P,Epha3:NM_010140:exon10:c.T1781C:p.L594P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9795596	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	85082847	12A2p6	cell line	sgMsh2	85082847	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	209	0	0	NA	exonic	App	nonsynonymous SNV	"App:NM_001198823:exon4:c.T397G:p.C133G,App:NM_001198824:exon4:c.T397G:p.C133G,App:NM_001198825:exon4:c.T397G:p.C133G,App:NM_001198826:exon4:c.T397G:p.C133G,App:NM_007471:exon4:c.T397G:p.C133G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9998498	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	87715535	12A2p6	cell line	sgMsh2	87715535	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	137	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon2:c.C145T:p.R49C	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.60621312	2	0.9378982	CCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	89898266	12A2p6	cell line	sgMsh2	89898266	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	86	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.T302C:p.V101A,Tiam1:NM_009384:exon4:c.T302C:p.V101A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.8477648	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	91654880	12A2p6	cell line	sgMsh2	91654880	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	133	0	0	NA	exonic	Son	nonsynonymous SNV	"Son:NM_019973:exon3:c.T514G:p.F172V,Son:NM_178880:exon3:c.T514G:p.F172V"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9758576	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	95409891	12A2p6	cell line	sgMsh2	95409891	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	111	0	0	NA	exonic	Erg	nonsynonymous SNV	"Erg:NM_001302153:exon2:c.A80T:p.H27L,Erg:NM_001302154:exon2:c.A80T:p.H27L,Erg:NM_001302179:exon3:c.A101T:p.H34L,Erg:NM_001302183:exon3:c.A101T:p.H34L,Erg:NM_133659:exon3:c.A101T:p.H34L,Erg:NM_001302152:exon4:c.A101T:p.H34L"	16qC4	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.6394257	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr16	96825557	12A2p6	cell line	sgMsh2	96825557	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	238	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon6:c.A1151T:p.Q384L	16qC4	chr16-4630421-97886207	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9996998	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	7281836	12A2p6	cell line	sgMsh2	7281836	C	A	SNV	Mutect2;Vardict	2	0.056	69	0	0	NA	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon13:c.C1143A:p.S381S	17qA1	chr17-6996132-8130601	4	3	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.832311	CCA	synonymous	NA	NA	NA	NA
22-1_par	chr17	7281843	12A2p6	cell line	sgMsh2	7281843	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	64	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon13:c.G1150A:p.V384I	17qA1	chr17-6996132-8130601	4	3	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	9.14E-08	GGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	8256410	12A2p6	cell line	sgMsh2	8256410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	308	0	0	NA	exonic	Ccr6	nonsynonymous SNV	"Ccr6:NM_001190337:exon2:c.G446A:p.R149H,Ccr6:NM_001190338:exon2:c.G569A:p.R190H,Ccr6:NM_001190333:exon3:c.G446A:p.R149H,Ccr6:NM_001190335:exon3:c.G446A:p.R149H,Ccr6:NM_001190336:exon3:c.G446A:p.R149H,Ccr6:NM_001190334:exon4:c.G446A:p.R149H,Ccr6:NM_009835:exon6:c.G446A:p.R149H"	17qA1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.42304081	2	6.69E-09	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	8992512	12A2p6	cell line	sgMsh2	8992512	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	79	0	0	NA	exonic	1700010I14Rik	nonsynonymous SNV	"1700010I14Rik:NM_001347544:exon2:c.G492C:p.R164S,1700010I14Rik:NM_025851:exon2:c.G492C:p.R164S"	17qA1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	2	0.9930682	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	12418731	12A2p6	cell line	sgMsh2	12418731	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	exonic	Plg	nonsynonymous SNV	Plg:NM_008877:exon18:c.A2226C:p.K742N	17qA1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.8705733	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	13822370	12A2p6	cell line	sgMsh2	13822370	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	212	0	0	NA	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon7:c.T1002G:p.S334R	17qA1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999416	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	18304916	12A2p6	cell line	sgMsh2	18304916	T	G	SNV	Mutect2;Vardict	2	0.036	372	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon3:c.T835G:p.S279A	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	1.69E-09	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	18441437	12A2p6	cell line	sgMsh2	18441437	T	A	SNV	Mutect2;Vardict	2	0.033	298	0	0	NA	exonic	Vmn2r95	nonsynonymous SNV	Vmn2r95:NM_001102581:exon4:c.T1444A:p.F482I	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	8.32E-09	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	19811831	12A2p6	cell line	sgMsh2	19811831	T	A	SNV	Mutect2;Vardict	2	0.034	454	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.T1866A:p.S622R	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	20375377	12A2p6	cell line	sgMsh2	20375377	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	864	0	0	NA	exonic	Vmn2r107	nonsynonymous SNV	Vmn2r107:NM_001104569:exon6:c.C2191T:p.H731Y	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	20580562	12A2p6	cell line	sgMsh2	20580562	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	533	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon5:c.A1607T:p.N536I	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	20583212	12A2p6	cell line	sgMsh2	20583212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.044	652	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon3:c.T1100C:p.I367T	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	1.00E-09	AAT	nonsynonymous	CAAT	8	CAATCAAT	NA
22-1_par	chr17	20624665	12A2p6	cell line	sgMsh2	20624665	G	A	SNV	Mutect2;Vardict	2	0.015	473	0	0	NA	exonic	Fpr-rs3	synonymous SNV	Fpr-rs3:NM_008040:exon1:c.C213T:p.D71D	17qA3.2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.065418682	3	1	AGT	synonymous	NA	NA	NA	NA
22-1_par	chr17	23742217	12A2p6	cell line	sgMsh2	23742217	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	72	0	0	NA	exonic	Kremen2	synonymous SNV	Kremen2:NM_028416:exon9:c.A1155T:p.L385L	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.9673076	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr17	24505388	12A2p6	cell line	sgMsh2	24505388	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	30	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.A2936C:p.K979T,Caskin1:NM_027937:exon18:c.A3149C:p.K1050T"	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.990002721	1	0.9907721	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	24586549	12A2p6	cell line	sgMsh2	24586549	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	209	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon30:c.T9987C:p.Y3329Y	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9998498	ATT	synonymous	NA	NA	NA	NA
22-1_par	chr17	25376136	12A2p6	cell line	sgMsh2	25376136	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	35	0	0	NA	exonic	Cacna1h	nonsynonymous SNV	Cacna1h:NM_021415:exon35:c.A6047T:p.H2016L	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.9258245	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	25825746	12A2p6	cell line	sgMsh2	25825746	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	129	0	0	NA	exonic	Wdr24	nonsynonymous SNV	Wdr24:NM_173741:exon2:c.G574A:p.D192N	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	2	0.9998345	GGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	25834931	12A2p6	cell line	sgMsh2	25834931	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	65	0	0	NA	exonic	Rhbdl1	nonsynonymous SNV	Rhbdl1:NM_144816:exon8:c.A976G:p.I326V	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9941701	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	25859135	12A2p6	cell line	sgMsh2	25859135	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	122	0	0	NA	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon8:c.G1258A:p.V420M	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9381646	ACG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	27435227	12A2p6	cell line	sgMsh2	27435227	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	104	0	0	NA	exonic	Grm4	stopgain	"Grm4:NM_001013385:exon8:c.G1748A:p.W583X,Grm4:NM_001360192:exon8:c.G1124A:p.W375X,Grm4:NM_001379317:exon8:c.G1124A:p.W375X,Grm4:NM_001291045:exon9:c.G1748A:p.W583X"	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.7980927	CCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	30747255	12A2p6	cell line	sgMsh2	30747255	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	243	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon51:c.G7418A:p.R2473H	17qA3.3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.8936952	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	33433776	12A2p6	cell line	sgMsh2	33433776	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	121	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.G809A:p.R270H	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	2	0.9899768	CGC	nonsynonymous	GCCC	8	GCCCGCCC	NA
22-1_par	chr17	33912218	12A2p6	cell line	sgMsh2	33912218	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	74	0	0	NA	exonic	Daxx	stopgain	"Daxx:NM_001199733:exon4:c.T1118A:p.L373X,Daxx:NM_001355704:exon4:c.T1118A:p.L373X,Daxx:NM_007829:exon4:c.T1118A:p.L373X"	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.763217957	1	0.9876604	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	34568224	12A2p6	cell line	sgMsh2	34568224	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	152	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon5:c.A851G:p.N284S	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8579269	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	35850311	12A2p6	cell line	sgMsh2	35850311	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	87	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon8:c.T2115G:p.D705E	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.7728253	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	37672275	12A2p6	cell line	sgMsh2	37672275	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	516	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.T251A:p.I84K	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	37672293	12A2p6	cell line	sgMsh2	37672293	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	446	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.A269G:p.N90S	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	1.36E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	37752440	12A2p6	cell line	sgMsh2	37752440	T	C	SNV	Mutect2;MuSe;Vardict	3	0.074	755	0	0	NA	exonic	Olfr121	synonymous SNV	Olfr121:NM_146629:exon2:c.T585C:p.C195C	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	2	0.9999985	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr17	37752750	12A2p6	cell line	sgMsh2	37752750	A	T	SNV	Mutect2;Vardict	2	0.047	523	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A895T:p.R299W	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	1.24E-08	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	37903652	12A2p6	cell line	sgMsh2	37903652	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	495	0	0	NA	exonic	Olfr127	synonymous SNV	Olfr127:NM_146377:exon1:c.C105T:p.Y35Y	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	3	1	ACC	synonymous	NA	NA	NA	NA
22-1_par	chr17	37924170	12A2p6	cell line	sgMsh2	37924170	T	G	SNV	Mutect2;Vardict	2	0.023	656	0	0	NA	exonic	Olfr128	synonymous SNV	Olfr128:NM_206816:exon1:c.T603G:p.T201T	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.100308646	3	1	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr17	38131107	12A2p6	cell line	sgMsh2	38131107	A	-	Deletion	Mutect2;Vardict	2	0.063	122	0	0	NA	exonic	Olfr132	frameshift deletion	Olfr132:NM_001005481:exon1:c.84delT:p.F28Lfs*2	17qB1	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	NA	NA	CAA	frameshift	A	5	AAAAA	-1
22-1_par	chr17	42502677	12A2p6	cell line	sgMsh2	42502677	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	426	0	0	NA	exonic	Ptchd4	nonsynonymous SNV	"Ptchd4:NM_001355270:exon3:c.C1477T:p.H493Y,Ptchd4:NM_028474:exon4:c.C1468T:p.H490Y"	17qB3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9999963	GCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	45666116	12A2p6	cell line	sgMsh2	45666116	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	169	0	0	NA	exonic	Tmem63b	nonsynonymous SNV	Tmem63b:NM_198167:exon15:c.T1324C:p.F442L	17qB3	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9898208	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	73941104	12A2p6	cell line	sgMsh2	73941104	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	227	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon3:c.A144T:p.E48D	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999979	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	74557992	12A2p6	cell line	sgMsh2	74557992	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	283	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon4:c.T746A:p.V249D	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	74579853	12A2p6	cell line	sgMsh2	74579853	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	83	0	0	NA	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon9:c.A2175G:p.L725L	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.366344619	2	0.9360958	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr17	74652684	12A2p6	cell line	sgMsh2	74652684	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	267	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon56:c.A11603C:p.K3868T	17qE2	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr17	88636386	12A2p6	cell line	sgMsh2	88636386	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	29	0	0	NA	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon2:c.G1219A:p.E407K	17qE4	chr17-8169809-94740433	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.8802465	GGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	3405689	12A2p6	cell line	sgMsh2	3405689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	258	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon3:c.A124G:p.I42V,Cul2:NM_029402:exon3:c.A124G:p.I42V"	18qA1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	9213061	12A2p6	cell line	sgMsh2	9213061	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	186	0	0	NA	exonic	Fzd8	nonsynonymous SNV	Fzd8:NM_008058:exon1:c.T142A:p.Y48N	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.960203	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	10100973	12A2p6	cell line	sgMsh2	10100973	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	474	0	0	NA	exonic	Rock1	synonymous SNV	Rock1:NM_009071:exon17:c.A1941G:p.R647R	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
22-1_par	chr18	12469853	12A2p6	cell line	sgMsh2	12469853	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	116	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon26:c.T3094C:p.Y1032H	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9444701	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	12909881	12A2p6	cell line	sgMsh2	12909881	T	C	SNV	Mutect2;Vardict	2	0.04	139	0	0	NA	exonic	Osbpl1a	nonsynonymous SNV	Osbpl1a:NM_207530:exon7:c.A602G:p.D201G	18qA1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9991665	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	20101936	12A2p6	cell line	sgMsh2	20101936	A	G	SNV	Mutect2;Strelka2	2	0.049	224	0	0	NA	exonic	Dsc1	synonymous SNV	"Dsc1:NM_001291804:exon6:c.T660C:p.Y220Y,Dsc1:NM_013504:exon6:c.T660C:p.Y220Y"	18qA2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9992724	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr18	20101938	12A2p6	cell line	sgMsh2	20101938	A	T	SNV	Mutect2;Strelka2	2	0.049	224	0	0	NA	exonic	Dsc1	nonsynonymous SNV	"Dsc1:NM_001291804:exon6:c.T658A:p.Y220N,Dsc1:NM_013504:exon6:c.T658A:p.Y220N"	18qA2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9992724	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	22524117	12A2p6	cell line	sgMsh2	22524117	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	62	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.C5183A:p.P1728H	18qA2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	2	0.9915471	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	25141543	12A2p6	cell line	sgMsh2	25141543	G	T	SNV	Mutect2;Vardict	2	0.027	209	0	0	NA	exonic	Tpgs2	synonymous SNV	"Tpgs2:NM_001004361:exon5:c.C474A:p.L158L,Tpgs2:NM_001142697:exon5:c.C333A:p.L111L,Tpgs2:NM_001142698:exon5:c.C474A:p.L158L"	18qA2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	0.9999999	CGA	synonymous	NA	NA	NA	NA
22-1_par	chr18	34312384	12A2p6	cell line	sgMsh2	34312384	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	272	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2155G:p.S719G,Apc:NM_007462:exon16:c.A2332G:p.S778G,Apc:NM_001360980:exon17:c.A2386G:p.S796G"	18qB1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	34317075	12A2p6	cell line	sgMsh2	34317075	A	G	SNV	Mutect2;Vardict	2	0.045	125	0	0	NA	exonic	Apc	synonymous SNV	"Apc:NM_001360979:exon16:c.A6846G:p.K2282K,Apc:NM_007462:exon16:c.A7023G:p.K2341K,Apc:NM_001360980:exon17:c.A7077G:p.K2359K"	18qB1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9945446	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr18	37090374	12A2p6	cell line	sgMsh2	37090374	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	83	0	0	NA	exonic	Pcdhac1	nonsynonymous SNV	Pcdhac1:NM_001003671:exon1:c.T239G:p.L80R	18qB2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9654382	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37091919	12A2p6	cell line	sgMsh2	37091919	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	69	0	0	NA	exonic	Pcdhac1	nonsynonymous SNV	Pcdhac1:NM_001003671:exon1:c.C1784A:p.A595D	18qB2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.8522139	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37514566	12A2p6	cell line	sgMsh2	37514566	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	199	0	0	NA	exonic	Pcdhb21	synonymous SNV	Pcdhb21:NM_053146:exon1:c.A747G:p.V249V	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8083329	TAC	synonymous	NA	NA	NA	NA
22-1_par	chr18	37643319	12A2p6	cell line	sgMsh2	37643319	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	229	0	0	NA	exonic	Taf7	nonsynonymous SNV	Taf7:NM_175770:exon2:c.C194A:p.A65E	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999567	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37681430	12A2p6	cell line	sgMsh2	37681430	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	333	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.A973G:p.I325V	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9999484	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37682216	12A2p6	cell line	sgMsh2	37682216	G	A	SNV	Mutect2;Vardict	2	0.072	204	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G1759A:p.G587R	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	2	0.9243375	CGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37962587	12A2p6	cell line	sgMsh2	37962587	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.213	17	0	0	NA	exonic	Fchsd1	nonsynonymous SNV	Fchsd1:NM_175684:exon17:c.T1843A:p.S615T	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.928945284	1	0.7940681	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	37974437	12A2p6	cell line	sgMsh2	37974437	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.052	153	0	0	NA	exonic	Arap3	frameshift deletion	"Arap3:NM_001205336:exon31:c.3792delT:p.F1264Lfs*39,Arap3:NM_139206:exon31:c.4026delT:p.F1342Lfs*39"	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-1_par	chr18	44850355	12A2p6	cell line	sgMsh2	44850355	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	228	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon11:c.G1588T:p.A530S	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9941133	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	44850419	12A2p6	cell line	sgMsh2	44850419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	235	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon11:c.A1652G:p.K551R	18qB3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.8294322	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	50160222	12A2p6	cell line	sgMsh2	50160222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	148	0	0	NA	exonic	Hsd17b4	nonsynonymous SNV	Hsd17b4:NM_008292:exon11:c.T827A:p.I276N	18qD1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9995625	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	50195866	12A2p6	cell line	sgMsh2	50195866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	185	0	0	NA	exonic	Hsd17b4	synonymous SNV	Hsd17b4:NM_008292:exon24:c.T2130C:p.S710S	18qD1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.588768138	2	0.992834	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr18	56740849	12A2p6	cell line	sgMsh2	56740849	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	109	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon7:c.C1326A:p.N442K	18qD3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.7696988	ACG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	58012293	12A2p6	cell line	sgMsh2	58012293	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	119	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon64:c.A8270G:p.Y2757C	18qD3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.5281943	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	61117682	12A2p6	cell line	sgMsh2	61117682	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	240	0	0	NA	exonic	Csf1r	nonsynonymous SNV	Csf1r:NM_001037859:exon10:c.T1464A:p.S488R	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9999958	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	61307872	12A2p6	cell line	sgMsh2	61307872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	39	0	0	NA	exonic	Ppargc1b	synonymous SNV	"Ppargc1b:NM_133249:exon8:c.T1926C:p.A642A,Ppargc1b:NM_001364996:exon9:c.T1974C:p.A658A"	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.924584039	1	0.9940375	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr18	62950109	12A2p6	cell line	sgMsh2	62950109	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	171	0	0	NA	exonic	Apcdd1	nonsynonymous SNV	Apcdd1:NM_133237:exon4:c.C1009T:p.P337S	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8771718	CCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	63082917	12A2p6	cell line	sgMsh2	63082917	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	215	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon25:c.T3674C:p.I1225T	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.9132805	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	63674070	12A2p6	cell line	sgMsh2	63674070	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	155	0	0	NA	exonic	Txnl1	nonsynonymous SNV	Txnl1:NM_016792:exon6:c.T714G:p.F238L	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9742445	GAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	65996705	12A2p6	cell line	sgMsh2	65996705	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	221	0	0	NA	exonic	Lman1	nonsynonymous SNV	"Lman1:NM_001172062:exon5:c.A640T:p.T214S,Lman1:NM_027400:exon5:c.A640T:p.T214S"	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9981205	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	67807345	12A2p6	cell line	sgMsh2	67807345	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	81	0	0	NA	exonic	Cep192	nonsynonymous SNV	Cep192:NM_027556:exon5:c.G382A:p.A128T	18qE1	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	2	0.9936501	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	74220034	12A2p6	cell line	sgMsh2	74220034	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	91	0	0	NA	exonic	Cxxc1	nonsynonymous SNV	"Cxxc1:NM_001378844:exon10:c.G1426C:p.E476Q,Cxxc1:NM_028868:exon10:c.G1414C:p.E472Q"	18qE2	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9355483	AGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	75624285	12A2p6	cell line	sgMsh2	75624285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	85	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon3:c.A196G:p.R66G	18qE3	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.715244256	1	0.9507597	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	84094867	12A2p6	cell line	sgMsh2	84094867	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	141	0	0	NA	exonic	Zadh2	nonsynonymous SNV	Zadh2:NM_146090:exon2:c.A667T:p.N223Y	18qE4	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.09540088	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr18	84558525	12A2p6	cell line	sgMsh2	84558525	A	-	Deletion	Mutect2;Vardict	2	0.08	136	0	0	NA	exonic	Zfp407	frameshift deletion	Zfp407:NM_001033341:exon2:c.4462delT:p.S1488Rfs*19	18qE4	chr18-5046666-88869177	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	NA	NA	GAA	frameshift	NA	NA	NA	-1
22-1_par	chr19	4342910	12A2p6	cell line	sgMsh2	4342910	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	398	0	0	NA	exonic	Kdm2a	synonymous SNV	Kdm2a:NM_001001984:exon12:c.A1416G:p.P472P	19qA	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GTG	synonymous	GCAGTG	12	GCAGTGGCAGTG	NA
22-1_par	chr19	5110437	12A2p6	cell line	sgMsh2	5110437	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	88	0	0	NA	exonic	Klc2	nonsynonymous SNV	"Klc2:NM_001369361:exon10:c.G1247T:p.G416V,Klc2:NM_001369362:exon10:c.G1247T:p.G416V"	19qA	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	ACC	nonsynonymous	CCTG	10	CCTGCCTGCC	NA
22-1_par	chr19	6070602	12A2p6	cell line	sgMsh2	6070602	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.13	24	0	0	NA	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon5:c.A1280C:p.Q427P	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.566961911	2	0.8543336	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	6071444	12A2p6	cell line	sgMsh2	6071444	G	T	SNV	Mutect2;Vardict	2	0.05	97	0	0	NA	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon4:c.C547A:p.L183M	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9607871	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	6082467	12A2p6	cell line	sgMsh2	6082467	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	108	0	0	NA	exonic	Zfpl1	nonsynonymous SNV	"Zfpl1:NM_001356994:exon5:c.A413C:p.D138A,Zfpl1:NM_024231:exon5:c.A413C:p.D138A"	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.7684763	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	7284514	12A2p6	cell line	sgMsh2	7284514	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	195	0	0	NA	exonic	Mark2	nonsynonymous SNV	"Mark2:NM_001080388:exon11:c.A1052T:p.Y351F,Mark2:NM_001080389:exon11:c.A1052T:p.Y351F,Mark2:NM_001080390:exon11:c.A953T:p.Y318F,Mark2:NM_007928:exon11:c.A1052T:p.Y351F"	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8052532	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	8619417	12A2p6	cell line	sgMsh2	8619417	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	152	0	0	NA	exonic	Slc22a6	synonymous SNV	Slc22a6:NM_008766:exon3:c.G558T:p.R186R	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7133074	GGC	synonymous	NA	NA	NA	NA
22-1_par	chr19	10916837	12A2p6	cell line	sgMsh2	10916837	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	72	0	0	NA	exonic	Zp1	nonsynonymous SNV	Zp1:NM_009580:exon7:c.T1097C:p.V366A	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.314009674	2	0.6429307	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	11301696	12A2p6	cell line	sgMsh2	11301696	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	271	0	0	NA	exonic	Ms4a14	nonsynonymous SNV	Ms4a14:NM_001377045:exon6:c.A3497C:p.Q1166P	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.51026572	2	9.85E-09	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	12210040	12A2p6	cell line	sgMsh2	12210040	T	C	SNV	Mutect2;Vardict	2	0.013	651	0	0	NA	exonic	Olfr1431	nonsynonymous SNV	Olfr1431:NM_146414:exon1:c.T473C:p.V158A	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.056696191	3	1	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	13780723	12A2p6	cell line	sgMsh2	13780723	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	304	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.A110G:p.Y37C	19qA	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	18691443	12A2p6	cell line	sgMsh2	18691443	T	A	SNV	Mutect2;MuSe;Vardict	3	0.118	99	0	0	NA	exonic	Carnmt1	nonsynonymous SNV	"Carnmt1:NM_001377051:exon5:c.T596A:p.L199H,Carnmt1:NM_001377052:exon5:c.T575A:p.L192H,Carnmt1:NM_001377053:exon5:c.T731A:p.L244H,Carnmt1:NM_001377054:exon5:c.T596A:p.L199H,Carnmt1:NM_001377055:exon5:c.T575A:p.L192H,Carnmt1:NM_026120:exon5:c.T731A:p.L244H"	19qB	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9994227	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	29296608	12A2p6	cell line	sgMsh2	29296608	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	156	0	0	NA	exonic	Jak2	synonymous SNV	"Jak2:NM_001048177:exon15:c.T2091C:p.L697L,Jak2:NM_008413:exon16:c.T2091C:p.L697L"	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9987544	TTA	synonymous	NA	NA	NA	NA
22-1_par	chr19	29626954	12A2p6	cell line	sgMsh2	29626954	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	293	0	0	NA	exonic	Ermp1	nonsynonymous SNV	"Ermp1:NM_001081213:exon8:c.T1423C:p.S475P,Ermp1:NM_001362131:exon8:c.T1423C:p.S475P"	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.999997	GAC	nonsynonymous	GA	8	GAGAGAGA	NA
22-1_par	chr19	29717156	12A2p6	cell line	sgMsh2	29717156	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.022	353	0	0	NA	exonic	9930021J03Rik	nonsynonymous SNV	9930021J03Rik:NM_172836:exon8:c.A5137T:p.I1713F	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.0959474	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	34594086	12A2p6	cell line	sgMsh2	34594086	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	454	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.A970G:p.I324V,Ifit1bl1:NM_001110517:exon2:c.A970G:p.I324V"	19qC1	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	3	1	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	36112810	12A2p6	cell line	sgMsh2	36112810	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	171	0	0	NA	exonic	Ankrd1	nonsynonymous SNV	Ankrd1:NM_013468:exon9:c.A857C:p.K286T	19qC2	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.553878174	2	0.9996858	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	37936172	12A2p6	cell line	sgMsh2	37936172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	125	0	0	NA	exonic	Myof	synonymous SNV	"Myof:NM_001099634:exon33:c.A3672G:p.K1224K,Myof:NM_001302140:exon34:c.A3711G:p.K1237K"	19qC2	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9984393	GTT	synonymous	NA	NA	NA	NA
22-1_par	chr19	44532674	12A2p6	cell line	sgMsh2	44532674	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	68	0	0	NA	exonic	Sec31b	nonsynonymous SNV	Sec31b:NM_001033343:exon8:c.T802A:p.W268R	19qC3	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.5333046	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	45636287	12A2p6	cell line	sgMsh2	45636287	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	119	0	0	NA	exonic	Fbxw4	nonsynonymous SNV	Fbxw4:NM_013907:exon3:c.A512G:p.N171S	19qC3	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.9784408	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	47082607	12A2p6	cell line	sgMsh2	47082607	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	154	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon11:c.A2369G:p.N790S	19qC3	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9919205	AAC	nonsynonymous	AAG	8	AAGAAGAA	NA
22-1_par	chr19	57382334	12A2p6	cell line	sgMsh2	57382334	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	329	0	0	NA	exonic	Fam160b1	nonsynonymous SNV	Fam160b1:NM_145505:exon12:c.A1684G:p.T562A	19qD2	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	1.51E-08	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr19	59301480	12A2p6	cell line	sgMsh2	59301480	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	228	0	0	NA	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.C1487T:p.A496V	19qD3	chr19-6054831-61227351	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.457930774	2	2.66E-08	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	3329416	12A2p6	cell line	sgMsh2	3329416	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	303	0	0	NA	exonic	Rpp38	nonsynonymous SNV	Rpp38:NM_001013376:exon2:c.A448T:p.T150S	2qA1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.9270402	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	3452996	12A2p6	cell line	sgMsh2	3452996	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	109	0	0	NA	exonic	Dclre1c	synonymous SNV	"Dclre1c:NM_001302674:exon12:c.A915G:p.K305K,Dclre1c:NM_001362903:exon13:c.A960G:p.K320K,Dclre1c:NM_001302684:exon14:c.A1305G:p.K435K,Dclre1c:NM_146114:exon14:c.A1305G:p.K435K,Dclre1c:NM_175683:exon14:c.A1305G:p.K435K"	2qA1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9934495	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr2	12160331	12A2p6	cell line	sgMsh2	12160331	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	149	0	0	NA	exonic	Itga8	synonymous SNV	Itga8:NM_001001309:exon24:c.T2466C:p.H822H	2qA1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5800715	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr2	14270172	12A2p6	cell line	sgMsh2	14270172	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	221	0	0	NA	exonic	Mrc1	nonsynonymous SNV	Mrc1:NM_008625:exon8:c.A1283C:p.D428A	2qA2	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.944646	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	19494156	12A2p6	cell line	sgMsh2	19494156	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	116	0	0	NA	exonic	4921504E06Rik	nonsynonymous SNV	4921504E06Rik:NM_027600:exon10:c.G1025A:p.R342Q	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7367687	CCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	20880941	12A2p6	cell line	sgMsh2	20880941	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	166	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon7:c.C1424T:p.A475V,Arhgap21:NM_001128084:exon8:c.C1454T:p.A485V"	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.9488234	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	24971546	12A2p6	cell line	sgMsh2	24971546	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	164	0	0	NA	exonic	Dph7	nonsynonymous SNV	"Dph7:NM_001355560:exon6:c.T385G:p.L129V,Dph7:NM_001355554:exon8:c.T604G:p.L202V,Dph7:NM_001355557:exon8:c.T535G:p.L179V,Dph7:NM_001355558:exon8:c.T535G:p.L179V,Dph7:NM_001355561:exon8:c.T355G:p.L119V,Dph7:NM_001355556:exon9:c.T535G:p.L179V,Dph7:NM_001355559:exon9:c.T535G:p.L179V,Dph7:NM_026044:exon9:c.T970G:p.L324V"	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	2	0.5023086	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	25350481	12A2p6	cell line	sgMsh2	25350481	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	101	0	0	NA	exonic	Man1b1	nonsynonymous SNV	Man1b1:NM_001029983:exon13:c.T1893G:p.F631L	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.645464329	2	6.64E-08	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	25503133	12A2p6	cell line	sgMsh2	25503133	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	245	0	0	NA	exonic	Fbxw5	nonsynonymous SNV	"Fbxw5:NM_001356407:exon4:c.G304A:p.A102T,Fbxw5:NM_001356408:exon5:c.G139A:p.A47T,Fbxw5:NM_013908:exon5:c.G535A:p.A179T"	2qA3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	2	0.9999863	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	29154018	12A2p6	cell line	sgMsh2	29154018	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	432	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon12:c.T5398C:p.Y1800H	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9988765	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	30824688	12A2p6	cell line	sgMsh2	30824688	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	112	0	0	NA	exonic	Asb6	nonsynonymous SNV	Asb6:NM_133346:exon5:c.G545A:p.G182D	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.09472884	ACC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	32385423	12A2p6	cell line	sgMsh2	32385423	G	-	Deletion	Mutect2;Vardict	2	0.041	204	0	0	NA	exonic	Lcn2	frameshift deletion	Lcn2:NM_008491:exon5:c.579delC:p.T194Pfs*83	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	NA	NA	TGG	frameshift	NA	NA	NA	-1
22-1_par	chr2	32452738	12A2p6	cell line	sgMsh2	32452738	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	137	0	0	NA	exonic	Naif1	synonymous SNV	Naif1:NM_194335:exon1:c.A300G:p.E100E	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5168443	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr2	32685854	12A2p6	cell line	sgMsh2	32685854	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	60	0	0	NA	exonic	Fpgs	nonsynonymous SNV	Fpgs:NM_010236:exon12:c.T1076C:p.V359A	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.8969318	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	34725426	12A2p6	cell line	sgMsh2	34725426	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	276	0	0	NA	exonic	Gapvd1	nonsynonymous SNV	"Gapvd1:NM_001356441:exon6:c.T1204A:p.L402M,Gapvd1:NM_025709:exon6:c.T1204A:p.L402M"	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9995576	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	35085337	12A2p6	cell line	sgMsh2	35085337	T	-	Deletion	Mutect2;Vardict	2	0.033	249	0	0	NA	exonic	AI182371	frameshift deletion	"AI182371:NM_001243102:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_001243103:exon9:c.849delA:p.K283Nfs*21,AI182371:NM_001379434:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_178885:exon9:c.849delA:p.K283Nfs*21"	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	NA	NA	ATT	frameshift	T	5	TTTTT	-1
22-1_par	chr2	36568909	12A2p6	cell line	sgMsh2	36568909	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	202	0	0	NA	exonic	Olfr344	nonsynonymous SNV	Olfr344:NM_146628:exon1:c.T310A:p.F104I	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9998014	TTT	nonsynonymous	T	5	TTTTT	NA
22-1_par	chr2	36568917	12A2p6	cell line	sgMsh2	36568917	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	190	0	0	NA	exonic	Olfr344	synonymous SNV	Olfr344:NM_146628:exon1:c.T318G:p.V106V	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9911618	TTT	synonymous	T	5	TTTTT	NA
22-1_par	chr2	36787312	12A2p6	cell line	sgMsh2	36787312	C	-	Deletion	Mutect2;Vardict	2	0.048	383	0	0	NA	exonic	Olfr348	frameshift deletion	Olfr348:NM_146944:exon1:c.786delC:p.S264Hfs*11	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	NA	NA	TCC	frameshift	NA	NA	NA	-1
22-1_par	chr2	36890583	12A2p6	cell line	sgMsh2	36890583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	663	0	0	NA	exonic	Olfr353	synonymous SNV	Olfr353:NM_146941:exon1:c.T264C:p.H88H	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	2.26E-09	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr2	37068550	12A2p6	cell line	sgMsh2	37068550	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	325	0	0	NA	exonic	Olfr360	nonsynonymous SNV	Olfr360:NM_146622:exon1:c.C244A:p.L82I	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9999817	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	37068836	12A2p6	cell line	sgMsh2	37068836	T	A	SNV	Mutect2;Vardict	2	0.032	562	0	0	NA	exonic	Olfr360	nonsynonymous SNV	Olfr360:NM_146622:exon1:c.T530A:p.F177Y	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	44988620	12A2p6	cell line	sgMsh2	44988620	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	469	0	0	NA	exonic	Zeb2	nonsynonymous SNV	"Zeb2:NM_001289521:exon9:c.A3601G:p.T1201A,Zeb2:NM_001355291:exon10:c.A3601G:p.T1201A,Zeb2:NM_015753:exon10:c.A3601G:p.T1201A,Zeb2:NM_001355288:exon11:c.A3601G:p.T1201A,Zeb2:NM_001355289:exon11:c.A3601G:p.T1201A,Zeb2:NM_001355290:exon12:c.A3601G:p.T1201A"	2qB	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	52179486	12A2p6	cell line	sgMsh2	52179486	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	404	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon126:c.A18051T:p.K6017N	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9999848	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	59791836	12A2p6	cell line	sgMsh2	59791836	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	261	0	0	NA	exonic	Tanc1	nonsynonymous SNV	"Tanc1:NM_001290659:exon9:c.G1277A:p.R426H,Tanc1:NM_198294:exon10:c.G1298A:p.R433H"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	2	0.9999995	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	59843524	12A2p6	cell line	sgMsh2	59843524	T	C	SNV	Mutect2;Vardict	2	0.052	92	0	0	NA	exonic	Tanc1	nonsynonymous SNV	"Tanc1:NM_001290659:exon26:c.T4951C:p.S1651P,Tanc1:NM_198294:exon27:c.T4972C:p.S1658P"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9370031	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	60628068	12A2p6	cell line	sgMsh2	60628068	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	110	0	0	NA	exonic	Itgb6	nonsynonymous SNV	"Itgb6:NM_021359:exon10:c.T1340G:p.L447R,Itgb6:NM_001159564:exon13:c.T1340G:p.L447R"	2qC1.2	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.366344619	2	0.9760138	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	65097708	12A2p6	cell line	sgMsh2	65097708	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	113	0	0	NA	exonic	Cobll1	synonymous SNV	"Cobll1:NM_027225:exon11:c.A3273G:p.P1091P,Cobll1:NM_177025:exon12:c.A3384G:p.P1128P,Cobll1:NM_001363076:exon13:c.A3483G:p.P1161P,Cobll1:NM_001363077:exon13:c.A3387G:p.P1129P"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9411559	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr2	66323335	12A2p6	cell line	sgMsh2	66323335	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	257	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2153T:p.S718I,Scn1a:NM_018733:exon13:c.G2120T:p.S707I"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7731132	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	69469520	12A2p6	cell line	sgMsh2	69469520	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	263	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon49:c.T9187G:p.S3063A	2qC2	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999978	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	72435236	12A2p6	cell line	sgMsh2	72435236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.05	457	0	0	NA	exonic	Map3k20	synonymous SNV	Map3k20:NM_023057:exon18:c.A1482G:p.P494P	2qC3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9999985	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr2	76737724	12A2p6	cell line	sgMsh2	76737724	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	245	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon154:c.G57843A:p.P19281P,Ttn:NM_011652:exon275:c.G77586A:p.P25862P,Ttn:NM_001385708:exon312:c.G83418A:p.P27806P"	2qC3	chr2-3197272-76814467	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.427402056	2	0.9999998	CCG	synonymous	NA	NA	NA	NA
22-1_par	chr2	79279113	12A2p6	cell line	sgMsh2	79279113	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	130	0	0	NA	exonic	Itga4	nonsynonymous SNV	Itga4:NM_010576:exon6:c.T655G:p.S219A	2qC3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	2	0.9990803	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	82256709	12A2p6	cell line	sgMsh2	82256709	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	333	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.T881G:p.I294S	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	1.86E-09	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	82978991	12A2p6	cell line	sgMsh2	82978991	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.043	762	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C5647A:p.P1883T	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	82993928	12A2p6	cell line	sgMsh2	82993928	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	213	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A19998G:p.I6666M	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9879618	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	82999810	12A2p6	cell line	sgMsh2	82999810	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	201	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon19:c.A20641T:p.I6881F	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.9322391	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	83915223	12A2p6	cell line	sgMsh2	83915223	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	223	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.T1870G:p.L624V	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9997957	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	86075298	12A2p6	cell line	sgMsh2	86075298	C	T	SNV	Mutect2;Vardict	2	0.043	556	0	0	NA	exonic	Olfr1036	nonsynonymous SNV	Olfr1036:NM_207142:exon1:c.C557T:p.A186V	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	1.05E-09	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	86413769	12A2p6	cell line	sgMsh2	86413769	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	176	0	0	NA	exonic	Olfr1061	nonsynonymous SNV	Olfr1061:NM_207134:exon1:c.T282G:p.F94L	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9763668	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	86754670	12A2p6	cell line	sgMsh2	86754670	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	181	0	0	NA	exonic	Olfr1090	nonsynonymous SNV	Olfr1090:NM_146847:exon1:c.T67A:p.L23M	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.681654	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	86829093	12A2p6	cell line	sgMsh2	86829093	T	-	Deletion	Mutect2;Vardict	2	0.026	291	0	0	NA	exonic	Olfr1094	frameshift deletion	Olfr1094:NM_146365:exon1:c.340delT:p.L115Sfs*20	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	NA	NA	GTT	frameshift	NA	NA	NA	-1
22-1_par	chr2	87071800	12A2p6	cell line	sgMsh2	87071800	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	201	0	0	NA	exonic	Olfr1107	synonymous SNV	Olfr1107:NM_146844:exon1:c.A333G:p.E111E	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	0.9999939	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr2	87418796	12A2p6	cell line	sgMsh2	87418796	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	260	0	0	NA	exonic	Olfr1123	nonsynonymous SNV	Olfr1123:NM_146350:exon1:c.A747C:p.K249N	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9999675	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	88093682	12A2p6	cell line	sgMsh2	88093682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	220	0	0	NA	exonic	Olfr1164	nonsynonymous SNV	Olfr1164:NM_146641:exon1:c.T253C:p.Y85H	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.6447332	TAG	nonsynonymous	A	5	AAAAA	NA
22-1_par	chr2	88525954	12A2p6	cell line	sgMsh2	88525954	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	369	0	0	NA	exonic	Olfr1186	nonsynonymous SNV	Olfr1186:NM_146530:exon1:c.T370C:p.C124R	2qD	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	88852313	12A2p6	cell line	sgMsh2	88852313	A	G	SNV	Mutect2;Vardict	2	0.039	433	0	0	NA	exonic	Olfr1204	nonsynonymous SNV	Olfr1204:NM_146463:exon1:c.A362G:p.Y121C	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	1.29E-09	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	88958582	12A2p6	cell line	sgMsh2	88958582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	354	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.G115T:p.G39C	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9964827	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	89013281	12A2p6	cell line	sgMsh2	89013281	G	A	SNV	Mutect2;MuSe;Vardict	3	0.074	276	0	0	NA	exonic	Olfr1216	nonsynonymous SNV	Olfr1216:NM_146893:exon1:c.C782T:p.T261I	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	2	0.9902483	TGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	89249221	12A2p6	cell line	sgMsh2	89249221	C	T	SNV	Mutect2;Vardict	2	0.016	502	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.G472A:p.V158I	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.069779927	3	1	ACC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	89325547	12A2p6	cell line	sgMsh2	89325547	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	185	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.T632A:p.V211D	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9951651	AAC	nonsynonymous	AACAA	11	AACAAAACAAA	NA
22-1_par	chr2	89575563	12A2p6	cell line	sgMsh2	89575563	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	419	0	0	NA	exonic	Olfr1245	synonymous SNV	Olfr1245:NM_146788:exon1:c.T162C:p.G54G	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	2.31E-09	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr2	90684017	12A2p6	cell line	sgMsh2	90684017	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	255	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon4:c.T308C:p.I103T	2qE1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	9.58E-09	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	101697386	12A2p6	cell line	sgMsh2	101697386	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	343	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.A1480C:p.T494P,Traf6:NM_009424:exon8:c.A1480C:p.T494P"	2qE2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.24E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	102642385	12A2p6	cell line	sgMsh2	102642385	A	C	SNV	Mutect2;Vardict	2	0.04	167	0	0	NA	exonic	Pamr1	synonymous SNV	Pamr1:NM_173749:exon11:c.A2028C:p.R676R	2qE2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9997808	GAG	synonymous	NA	NA	NA	NA
22-1_par	chr2	103276830	12A2p6	cell line	sgMsh2	103276830	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	166	0	0	NA	exonic	Ehf	synonymous SNV	Ehf:NM_007914:exon4:c.A348G:p.Q116Q	2qE2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9942317	ATT	synonymous	NA	NA	NA	NA
22-1_par	chr2	104255140	12A2p6	cell line	sgMsh2	104255140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	300	0	0	NA	exonic	D430041D05Rik	synonymous SNV	"D430041D05Rik:NM_001033347:exon3:c.T1011C:p.R337R,D430041D05Rik:NM_001368844:exon3:c.T1011C:p.R337R"	2qE2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.9755916	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr2	110268259	12A2p6	cell line	sgMsh2	110268259	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	218	0	0	NA	exonic	Bbox1	synonymous SNV	Bbox1:NM_130452:exon6:c.A972G:p.K324K	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999808	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr2	111214632	12A2p6	cell line	sgMsh2	111214632	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	505	0	0	NA	exonic	A26c3	synonymous SNV	"A26c3:NM_001378593:exon8:c.A897G:p.G299G,A26c3:NM_026248:exon8:c.A897G:p.G299G"	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	1.41E-09	ATC	synonymous	NA	NA	NA	NA
22-1_par	chr2	111335676	12A2p6	cell line	sgMsh2	111335676	C	T	SNV	Mutect2;MuSe;Vardict	3	0.042	1154	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G401A:p.S134N	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	1	GCT	nonsynonymous	TGC	8	TGCTGCTG	NA
22-1_par	chr2	111369453	12A2p6	cell line	sgMsh2	111369453	T	G	SNV	Mutect2;Vardict	2	0.013	665	0	0	NA	exonic	Olfr1283	nonsynonymous SNV	Olfr1283:NM_207236:exon1:c.T820G:p.F274V	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.056696191	3	1	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	111645643	12A2p6	cell line	sgMsh2	111645643	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	795	0	0	NA	exonic	Olfr1298	nonsynonymous SNV	Olfr1298:NM_146886:exon1:c.T353A:p.M118K	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	3	1	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	111944657	12A2p6	cell line	sgMsh2	111944657	G	T	SNV	Mutect2;Vardict	2	0.052	274	0	0	NA	exonic	Olfr1307	nonsynonymous SNV	Olfr1307:NM_001011787:exon1:c.C798A:p.H266Q	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9992059	GGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	112072109	12A2p6	cell line	sgMsh2	112072109	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	245	0	0	NA	exonic	Olfr1313	nonsynonymous SNV	Olfr1313:NM_207150:exon1:c.T473C:p.I158T	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	7.73E-09	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	112072130	12A2p6	cell line	sgMsh2	112072130	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	290	0	0	NA	exonic	Olfr1313	nonsynonymous SNV	Olfr1313:NM_207150:exon1:c.T452G:p.V151G	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	2.25E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	112091952	12A2p6	cell line	sgMsh2	112091952	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	591	0	0	NA	exonic	Olfr1314	nonsynonymous SNV	Olfr1314:NM_146450:exon1:c.T748G:p.F250V	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	1	1	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	112479563	12A2p6	cell line	sgMsh2	112479563	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	239	0	0	NA	exonic	Chrm5	nonsynonymous SNV	Chrm5:NM_205783:exon1:c.A1207T:p.M403L	2qE3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999715	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	120023648	12A2p6	cell line	sgMsh2	120023648	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	168	0	0	NA	exonic	Mapkbp1	nonsynonymous SNV	"Mapkbp1:NM_011941:exon28:c.A3707G:p.Y1236C,Mapkbp1:NM_001355293:exon29:c.A3725G:p.Y1242C"	2qE5	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9625331	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	126822494	12A2p6	cell line	sgMsh2	126822494	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	144	0	0	NA	exonic	Trpm7	synonymous SNV	"Trpm7:NM_001164325:exon21:c.T2964C:p.P988P,Trpm7:NM_021450:exon21:c.T2964C:p.P988P"	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9679402	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr2	127061988	12A2p6	cell line	sgMsh2	127061988	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	132	0	0	NA	exonic	Ap4e1	nonsynonymous SNV	Ap4e1:NM_175550:exon18:c.T2809G:p.S937A	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9910013	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	127214848	12A2p6	cell line	sgMsh2	127214848	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	627	0	0	NA	exonic	Snrnp200	synonymous SNV	Snrnp200:NM_177214:exon6:c.T672C:p.A224A	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr2	130037556	12A2p6	cell line	sgMsh2	130037556	C	-	Deletion	Mutect2;Vardict	2	0.056	206	0	0	NA	exonic	Tgm3	frameshift deletion	Tgm3:NM_009374:exon8:c.1067delC:p.Q358Rfs*28	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	NA	NA	ACC	frameshift	C	5	CCCCC	-1
22-1_par	chr2	130240151	12A2p6	cell line	sgMsh2	130240151	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	229	0	0	NA	exonic	Tmc2	nonsynonymous SNV	Tmc2:NM_138655:exon11:c.T1253G:p.L418R	2qF1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	135952017	12A2p6	cell line	sgMsh2	135952017	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	487	0	0	NA	exonic	Plcb4	synonymous SNV	"Plcb4:NM_001355154:exon14:c.T1089C:p.D363D,Plcb4:NM_001355156:exon14:c.T285C:p.D95D,Plcb4:NM_001355153:exon15:c.T1089C:p.D363D,Plcb4:NM_001355155:exon15:c.T1089C:p.D363D,Plcb4:NM_013829:exon15:c.T1089C:p.D363D"	2qF3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.00E-09	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr2	136880442	12A2p6	cell line	sgMsh2	136880442	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	220	0	0	NA	exonic	Mkks	nonsynonymous SNV	"Mkks:NM_001141946:exon3:c.A794G:p.Q265R,Mkks:NM_021527:exon3:c.A794G:p.Q265R"	2qF3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9954722	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	155299048	12A2p6	cell line	sgMsh2	155299048	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.09	79	0	0	NA	exonic	Pigu	nonsynonymous SNV	Pigu:NM_001004721:exon9:c.A924T:p.L308F	2qH1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.392512092	2	0.9693633	TTA	nonsynonymous	ACTT	8	ACTTACTT	NA
22-1_par	chr2	157021193	12A2p6	cell line	sgMsh2	157021193	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.188	22	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon14:c.T3815C:p.I1272T	2qH1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.819914148	1	0.7042683	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	157321829	12A2p6	cell line	sgMsh2	157321829	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	179	0	0	NA	exonic	Rpn2	nonsynonymous SNV	"Rpn2:NM_001355163:exon16:c.T1840C:p.F614L,Rpn2:NM_001355164:exon16:c.T1831C:p.F611L,Rpn2:NM_001355165:exon16:c.T1186C:p.F396L,Rpn2:NM_019642:exon16:c.T1840C:p.F614L"	2qH1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9998763	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	158131481	12A2p6	cell line	sgMsh2	158131481	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	117	0	0	NA	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon6:c.C709T:p.L237F	2qH1	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.8128056	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	160712667	12A2p6	cell line	sgMsh2	160712667	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	171	0	0	NA	exonic	Top1	nonsynonymous SNV	Top1:NM_009408:exon14:c.A1337G:p.Y446C	2qH2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9999332	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	160961928	12A2p6	cell line	sgMsh2	160961928	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	150	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon32:c.C6211T:p.R2071W	2qH2	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9991164	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	166955048	12A2p6	cell line	sgMsh2	166955048	A	C	SNV	Mutect2;Vardict	2	0.071	74	0	0	NA	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon5:c.T410G:p.F137C,Stau1:NM_001109906:exon5:c.T428G:p.F143C,Stau1:NM_001291160:exon5:c.T410G:p.F137C,Stau1:NM_011490:exon5:c.T410G:p.F137C"	2qH3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.6161475	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	167050421	12A2p6	cell line	sgMsh2	167050421	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	367	0	0	NA	exonic	Znfx1	nonsynonymous SNV	Znfx1:NM_001033196:exon4:c.T1874G:p.I625S	2qH3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	1.67E-08	AAT	nonsynonymous	T	5	TTTTT	NA
22-1_par	chr2	172373031	12A2p6	cell line	sgMsh2	172373031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	177	0	0	NA	exonic	Cstf1	nonsynonymous SNV	Cstf1:NM_024199:exon2:c.A71C:p.Y24S	2qH3	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9999558	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	174425196	12A2p6	cell line	sgMsh2	174425196	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	200	0	0	NA	exonic	Nelfcd	nonsynonymous SNV	Nelfcd:NM_020580:exon10:c.A1202G:p.E401G	2qH4	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.999998	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	178350884	12A2p6	cell line	sgMsh2	178350884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	375	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon37:c.T3872C:p.L1291S	2qH4	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.9713862	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	179924067	12A2p6	cell line	sgMsh2	179924067	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	97	0	0	NA	exonic	Taf4	nonsynonymous SNV	Taf4:NM_001081092:exon11:c.G2570A:p.S857N	2qH4	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.09486046	ACT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr2	180473532	12A2p6	cell line	sgMsh2	180473532	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	164	0	0	NA	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon11:c.T1901A:p.I634N,Slco4a1:NM_148933:exon11:c.T1901A:p.I634N"	2qH4	chr2-76867311-181807525	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.6521605	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	10016110	12A2p6	cell line	sgMsh2	10016110	A	G	SNV	Mutect2;Vardict	2	0.028	283	0	0	NA	exonic	Fabp5	nonsynonymous SNV	"Fabp5:NM_001272097:exon4:c.A395G:p.K132R,Fabp5:NM_010634:exon4:c.A398G:p.K133R"	3qA1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	2.17E-09	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	17948607	12A2p6	cell line	sgMsh2	17948607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	197	0	0	NA	exonic	Cypt12	nonsynonymous SNV	Cypt12:NM_029289:exon1:c.G143A:p.S48N	3qA1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	2	0.9999802	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	19974960	12A2p6	cell line	sgMsh2	19974960	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	118	0	0	NA	exonic	Cp	nonsynonymous SNV	"Cp:NM_001276248:exon9:c.T1597C:p.Y533H,Cp:NM_001276250:exon9:c.T1597C:p.Y533H,Cp:NM_001374677:exon9:c.T1597C:p.Y533H,Cp:NM_007752:exon9:c.T1600C:p.Y534H"	3qA2	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.6920398	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	31224032	12A2p6	cell line	sgMsh2	31224032	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	129	0	0	NA	exonic	Slc7a14	nonsynonymous SNV	Slc7a14:NM_172861:exon7:c.A1423G:p.S475G	3qA3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9939812	CTG	nonsynonymous	GGCTG	11	GGCTGGGCTGG	NA
22-1_par	chr3	32437254	12A2p6	cell line	sgMsh2	32437254	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	185	0	0	NA	exonic	Pik3ca	synonymous SNV	Pik3ca:NM_008839:exon3:c.A489T:p.A163A	3qA3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.9995112	CAA	synonymous	ATGT	8	ATGTATGT	NA
22-1_par	chr3	36671461	12A2p6	cell line	sgMsh2	36671461	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	153	0	0	NA	exonic	Trpc3	nonsynonymous SNV	Trpc3:NM_019510:exon2:c.A365C:p.E122A	3qB	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.936998	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	37121113	12A2p6	cell line	sgMsh2	37121113	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	184	0	0	NA	exonic	Il2	nonsynonymous SNV	Il2:NM_008366:exon4:c.C501A:p.S167R	3qB	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	1	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	46446244	12A2p6	cell line	sgMsh2	46446244	C	A	SNV	Mutect2;Vardict	2	0.046	147	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.G964T:p.V322F	3qB	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9968454	ACC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	53473537	12A2p6	cell line	sgMsh2	53473537	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	233	0	0	NA	exonic	Proser1	nonsynonymous SNV	Proser1:NM_173382:exon7:c.A534G:p.I178M	3qC	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9946836	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	53656520	12A2p6	cell line	sgMsh2	53656520	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	160	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.A565T:p.T189S	3qC	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.7173234	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	56058663	12A2p6	cell line	sgMsh2	56058663	A	-	Deletion	Mutect2;Vardict	2	0.058	137	0	0	NA	exonic	Nbea	frameshift deletion	Nbea:NM_030595:exon9:c.1377delT:p.F459Lfs*7	3qC	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-1_par	chr3	62594965	12A2p6	cell line	sgMsh2	62594965	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.068	224	0	0	NA	exonic	Gpr149	frameshift deletion	"Gpr149:NM_001356525:exon3:c.1469delA:p.K490Rfs*57,Gpr149:NM_177346:exon3:c.1469delA:p.K490Rfs*93"	3qE1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-1_par	chr3	63976290	12A2p6	cell line	sgMsh2	63976290	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	120	0	0	NA	exonic	Gmps	nonsynonymous SNV	Gmps:NM_001033300:exon1:c.C7A:p.L3M	3qE1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7409712	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	66125952	12A2p6	cell line	sgMsh2	66125952	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	394	0	0	NA	exonic	Veph1	synonymous SNV	Veph1:NM_145820:exon10:c.C1752T:p.C584C	3qE1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.999576	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr3	69222667	12A2p6	cell line	sgMsh2	69222667	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	exonic	Arl14	nonsynonymous SNV	Arl14:NM_027843:exon1:c.T146C:p.V49A	3qE1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999944	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	72941055	12A2p6	cell line	sgMsh2	72941055	C	G	SNV	Mutect2;Vardict	2	0.048	161	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon17:c.G1885C:p.A629P	3qE3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9964397	GCC	nonsynonymous	A	5	AAAAA	NA
22-1_par	chr3	76707545	12A2p6	cell line	sgMsh2	76707545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.089	265	0	0	NA	exonic	Fstl5	frameshift deletion	"Fstl5:NM_001253719:exon16:c.1912delA:p.T639Qfs*3,Fstl5:NM_178673:exon16:c.1912delA:p.T639Qfs*3"	3qE3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-1_par	chr3	76707945	12A2p6	cell line	sgMsh2	76707945	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	78	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon16:c.T2312G:p.L771R,Fstl5:NM_178673:exon16:c.T2312G:p.L771R"	3qE3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.894055321	1	0.9999724	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	82006578	12A2p6	cell line	sgMsh2	82006578	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	195	0	0	NA	exonic	Asic5	synonymous SNV	Asic5:NM_021370:exon4:c.C684A:p.G228G	3qE3	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.819914148	1	2.30E-09	GCT	synonymous	NA	NA	NA	NA
22-1_par	chr3	85871929	12A2p6	cell line	sgMsh2	85871929	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	397	0	0	NA	exonic	Glt28d2	nonsynonymous SNV	Glt28d2:NM_177130:exon2:c.G236A:p.S79N	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9999961	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	86792002	12A2p6	cell line	sgMsh2	86792002	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	75	0	0	NA	exonic	Dclk2	nonsynonymous SNV	"Dclk2:NM_001195497:exon15:c.T2060G:p.V687G,Dclk2:NM_027539:exon15:c.T2063G:p.V688G,Dclk2:NM_001195496:exon16:c.T2108G:p.V703G,Dclk2:NM_001195498:exon16:c.T2111G:p.V704G,Dclk2:NM_001195499:exon16:c.T2108G:p.V703G,Dclk2:NM_001357460:exon16:c.T2111G:p.V704G"	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.344538392	2	0.8392231	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	87788410	12A2p6	cell line	sgMsh2	87788410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	106	0	0	NA	exonic	Ntrk1	synonymous SNV	Ntrk1:NM_001033124:exon6:c.C630T:p.G210G	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	9.71E-09	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr3	87804023	12A2p6	cell line	sgMsh2	87804023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	71	0	0	NA	exonic	Insrr	nonsynonymous SNV	Insrr:NM_011832:exon6:c.T1249G:p.L417V	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.597490629	2	0.9265907	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	87971396	12A2p6	cell line	sgMsh2	87971396	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.12	31	0	0	NA	exonic	Nes	nonsynonymous SNV	Nes:NM_016701:exon1:c.T194A:p.V65D	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	2	0.915865	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	88057835	12A2p6	cell line	sgMsh2	88057835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	137	0	0	NA	exonic	Naxe	synonymous SNV	Naxe:NM_144897:exon4:c.T387C:p.G129G	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.9960371	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr3	88353045	12A2p6	cell line	sgMsh2	88353045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	135	0	0	NA	exonic	Smg5	synonymous SNV	Smg5:NM_178246:exon13:c.G1941A:p.L647L	3qF1	chr3-10012637-88863885	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.344538392	2	0.9657578	TGC	synonymous	NA	NA	NA	NA
22-1_par	chr3	89443208	12A2p6	cell line	sgMsh2	89443208	G	T	SNV	Mutect2;Vardict	2	0.091	52	0	0	NA	exonic	Pbxip1	nonsynonymous SNV	Pbxip1:NM_146131:exon3:c.G138T:p.K46N	3qF1	chr3-88890516-93206200	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.09802123	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	92869025	12A2p6	cell line	sgMsh2	92869025	G	-	Deletion	Mutect2;Vardict	2	0.026	381	0	0	NA	exonic	2310050C09Rik	frameshift deletion	2310050C09Rik:NM_025621:exon2:c.350delC:p.P117Hfs*6	3qF1	chr3-88890516-93206200	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	NA	NA	TGG	frameshift	NA	NA	NA	-1
22-1_par	chr3	93215705	12A2p6	cell line	sgMsh2	93215705	T	C	SNV	Mutect2;MuSe;Vardict	3	0.07	343	0	0	NA	exonic	Flg2	synonymous SNV	Flg2:NM_001013804:exon6:c.T5181C:p.G1727G	3qF2.1	chr3-93212823-102854538	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.9602703	GTG	synonymous	GTGAGG	12	GTGAGGGTGAGG	NA
22-1_par	chr3	93396217	12A2p6	cell line	sgMsh2	93396217	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	234	0	0	NA	exonic	Rptn	nonsynonymous SNV	Rptn:NM_009100:exon3:c.A856G:p.T286A	3qF2.1	chr3-93212823-102854538	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	0.9999994	GAC	nonsynonymous	CAGA	14	CAGACAGAGAGACA	NA
22-1_par	chr3	95609765	12A2p6	cell line	sgMsh2	95609765	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	224	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon3:c.A394C:p.T132P,Golph3l:NM_001177670:exon4:c.A583C:p.T195P,Golph3l:NM_146133:exon4:c.A583C:p.T195P"	3qF2.1	chr3-93212823-102854538	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	96657729	12A2p6	cell line	sgMsh2	96657729	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	281	0	0	NA	exonic	Itga10	nonsynonymous SNV	Itga10:NM_001302471:exon25:c.A2992G:p.N998D	3qF2.1	chr3-93212823-102854538	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9998699	TAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	96722611	12A2p6	cell line	sgMsh2	96722611	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	226	0	0	NA	exonic	Polr3c	nonsynonymous SNV	Polr3c:NM_028925:exon5:c.A604T:p.R202W	3qF2.1	chr3-93212823-102854538	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8281509	CTC	nonsynonymous	CTC	9	CTCCTCCTC	NA
22-1_par	chr3	104038646	12A2p6	cell line	sgMsh2	104038646	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	213	0	0	NA	exonic	Magi3	synonymous SNV	"Magi3:NM_001159354:exon14:c.T2340C:p.D780D,Magi3:NM_133853:exon14:c.T2340C:p.D780D"	3qF2.2	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9947062	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr3	104038660	12A2p6	cell line	sgMsh2	104038660	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	196	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon14:c.T2326G:p.L776V,Magi3:NM_133853:exon14:c.T2326G:p.L776V"	3qF2.2	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9963764	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	105078367	12A2p6	cell line	sgMsh2	105078367	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	178	0	0	NA	exonic	4930564D02Rik	synonymous SNV	4930564D02Rik:NM_029228:exon5:c.T96A:p.A32A	3qF2.2	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9994823	CTC	synonymous	NA	NA	NA	NA
22-1_par	chr3	106734490	12A2p6	cell line	sgMsh2	106734490	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	74	0	0	NA	exonic	Lrif1	nonsynonymous SNV	"Lrif1:NM_001039478:exon2:c.T181G:p.F61V,Lrif1:NM_028081:exon2:c.T121G:p.F41V,Lrif1:NM_001039488:exon3:c.T1675G:p.F559V,Lrif1:NM_001286685:exon4:c.T121G:p.F41V"	3qF2.3	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.479737001	2	0.9971884	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	108076692	12A2p6	cell line	sgMsh2	108076692	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	64	0	0	NA	exonic	Ampd2	nonsynonymous SNV	"Ampd2:NM_001289720:exon13:c.T1619A:p.L540Q,Ampd2:NM_001346665:exon13:c.T1619A:p.L540Q,Ampd2:NM_028779:exon13:c.T1541A:p.L514Q,Ampd2:NM_001289719:exon14:c.T1541A:p.L514Q"	3qF2.3	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	8.47E-06	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	109651804	12A2p6	cell line	sgMsh2	109651804	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.019	540	0	0	NA	exonic	Vav3	nonsynonymous SNV	"Vav3:NM_146139:exon5:c.T319C:p.Y107H,Vav3:NM_001378987:exon22:c.T1999C:p.Y667H,Vav3:NM_020505:exon22:c.T1999C:p.Y667H"	3qF3	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.082863664	3	1	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	113563649	12A2p6	cell line	sgMsh2	113563649	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	276	0	0	NA	exonic	Amy1	synonymous SNV	"Amy1:NM_001110505:exon5:c.T540C:p.L180L,Amy1:NM_007446:exon5:c.T540C:p.L180L"	3qF3	chr3-102944964-114113643	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999999	GAA	synonymous	NA	NA	NA	NA
22-1_par	chr3	116687104	12A2p6	cell line	sgMsh2	116687104	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	194	0	0	NA	exonic	Slc35a3	nonsynonymous SNV	"Slc35a3:NM_144902:exon4:c.G423T:p.W141C,Slc35a3:NM_001362374:exon5:c.G423T:p.W141C"	3qG1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9961812	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	119747620	12A2p6	cell line	sgMsh2	119747620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	312	0	0	NA	exonic	Ptbp2	nonsynonymous SNV	"Ptbp2:NM_001310711:exon7:c.A680T:p.D227V,Ptbp2:NM_019550:exon7:c.A680T:p.D227V"	3qG1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.686547	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	122933820	12A2p6	cell line	sgMsh2	122933820	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	382	0	0	NA	exonic	Usp53	nonsynonymous SNV	Usp53:NM_133857:exon16:c.T3112C:p.Y1038H	3qG1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	1.39E-09	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	123485560	12A2p6	cell line	sgMsh2	123485560	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	230	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon6:c.T1285C:p.Y429H	3qG1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.9999997	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	127815684	12A2p6	cell line	sgMsh2	127815684	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	84	0	0	NA	exonic	Ap1ar	nonsynonymous SNV	Ap1ar:NM_145964:exon6:c.A287T:p.Q96L	3qG2	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.5676246	TTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	129628321	12A2p6	cell line	sgMsh2	129628321	A	G	SNV	Mutect2;MuSe;Vardict	3	0.063	305	0	0	NA	exonic	Elovl6	nonsynonymous SNV	Elovl6:NM_130450:exon4:c.A260G:p.Y87C	3qG3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.797337	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	130728785	12A2p6	cell line	sgMsh2	130728785	A	T	SNV	Mutect2;Vardict	2	0.05	191	0	0	NA	exonic	Rpl34;Rpl34-ps1	nonsynonymous SNV	"Rpl34:NM_001005859:exon4:c.T232A:p.Y78N,Rpl34-ps1:NM_001199350:exon4:c.T232A:p.Y78N,Rpl34:NM_001287581:exon4:c.T232A:p.Y78N,Rpl34:NM_026724:exon4:c.T232A:p.Y78N"	3qG3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9971467	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	135856028	12A2p6	cell line	sgMsh2	135856028	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	153	0	0	NA	exonic	Slc39a8	synonymous SNV	"Slc39a8:NM_001135149:exon4:c.T507C:p.A169A,Slc39a8:NM_001135150:exon4:c.T507C:p.A169A,Slc39a8:NM_026228:exon4:c.T507C:p.A169A"	3qG3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.292203446	2	0.5684463	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr3	141211167	12A2p6	cell line	sgMsh2	141211167	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	177	0	0	NA	exonic	Pdha2	synonymous SNV	Pdha2:NM_008811:exon1:c.T579G:p.A193A	3qH1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.963835248	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr3	141789048	12A2p6	cell line	sgMsh2	141789048	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	205	0	0	NA	exonic	Unc5c	nonsynonymous SNV	"Unc5c:NM_009472:exon8:c.A1286G:p.K429R,Unc5c:NM_001293561:exon9:c.A1343G:p.K448R"	3qH1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9996091	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	142303957	12A2p6	cell line	sgMsh2	142303957	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	171	0	0	NA	exonic	Pdlim5	synonymous SNV	"Pdlim5:NM_001190852:exon7:c.T579C:p.N193N,Pdlim5:NM_001190854:exon7:c.T579C:p.N193N,Pdlim5:NM_001190855:exon7:c.T579C:p.N193N,Pdlim5:NM_001190856:exon7:c.T579C:p.N193N,Pdlim5:NM_001190857:exon7:c.T597C:p.N199N,Pdlim5:NM_019808:exon7:c.T906C:p.N302N,Pdlim5:NM_019809:exon7:c.T906C:p.N302N,Pdlim5:NM_022554:exon8:c.T612C:p.N204N,Pdlim5:NM_001190853:exon9:c.T537C:p.N179N"	3qH1	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9903006	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr3	144797814	12A2p6	cell line	sgMsh2	144797814	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	76	0	0	NA	exonic	Clca3a2	nonsynonymous SNV	Clca3a2:NM_030601:exon14:c.T2374C:p.Y792H	3qH2	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.6886697	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	152374779	12A2p6	cell line	sgMsh2	152374779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	153	0	0	NA	exonic	Usp33	nonsynonymous SNV	"Usp33:NM_001076676:exon13:c.T1546C:p.Y516H,Usp33:NM_001252486:exon13:c.T1546C:p.Y516H,Usp33:NM_001355666:exon13:c.T1546C:p.Y516H,Usp33:NM_133247:exon13:c.T1546C:p.Y516H"	3qH3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.9980257	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	152427354	12A2p6	cell line	sgMsh2	152427354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	229	0	0	NA	exonic	Zzz3	synonymous SNV	"Zzz3:NM_001355673:exon3:c.T48C:p.V16V,Zzz3:NM_001080755:exon4:c.T48C:p.V16V,Zzz3:NM_001287139:exon4:c.T48C:p.V16V"	3qH3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.999998	TTA	synonymous	NA	NA	NA	NA
22-1_par	chr3	152660569	12A2p6	cell line	sgMsh2	152660569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	209	0	0	NA	exonic	Ak5	nonsynonymous SNV	"Ak5:NM_001081277:exon2:c.A194G:p.K65R,Ak5:NM_001355635:exon2:c.A194G:p.K65R"	3qH3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9999934	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	153888748	12A2p6	cell line	sgMsh2	153888748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	114	0	0	NA	exonic	Msh4	nonsynonymous SNV	"Msh4:NM_031870:exon6:c.A997G:p.M333V,Msh4:NM_001282054:exon7:c.A415G:p.M139V"	3qH3	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9289746	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	154265477	12A2p6	cell line	sgMsh2	154265477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	448	0	0	NA	exonic	Slc44a5	nonsynonymous SNV	Slc44a5:NM_001081263:exon21:c.T1963C:p.Y655H	3qH4	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.492820738	2	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr3	158012103	12A2p6	cell line	sgMsh2	158012103	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	133	0	0	NA	exonic	Srsf11	nonsynonymous SNV	"Srsf11:NM_001093753:exon12:c.A1337T:p.K446M,Srsf11:NM_001379533:exon12:c.A1358T:p.K453M,Srsf11:NM_001093752:exon13:c.A1442T:p.K481M,Srsf11:NM_001379531:exon13:c.A1463T:p.K488M,Srsf11:NM_001379532:exon13:c.A1439T:p.K480M"	3qH4	chr3-114205493-159913826	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9959688	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	11365421	12A2p6	cell line	sgMsh2	11365421	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	275	0	0	NA	exonic	Esrp1	synonymous SNV	"Esrp1:NM_001290383:exon7:c.T705C:p.S235S,Esrp1:NM_001347052:exon7:c.T708C:p.S236S,Esrp1:NM_194055:exon7:c.T708C:p.S236S"	4qA1	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9997339	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr4	14506455	12A2p6	cell line	sgMsh2	14506455	A	-	Deletion	Strelka2;Vardict	2	0.0578	225	0	0	NA	exonic	Slc26a7	frameshift deletion	Slc26a7:NM_145947:exon18:c.1893delT:p.F631Lfs*7	4qA1	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252079988	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
22-1_par	chr4	15970876	12A2p6	cell line	sgMsh2	15970876	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.064	198	0	0	NA	exonic	Nbn	frameshift insertion	Nbn:NM_013752:exon7:c.859dupA:p.W289Mfs*18	4qA2	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	NA	NA	AGA	frameshift	A	5	AAAAA	1
22-1_par	chr4	19662148	12A2p6	cell line	sgMsh2	19662148	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	34	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001355222:exon6:c.T242C:p.V81A,Wwp1:NM_177327:exon6:c.T446C:p.V149A"	4qA3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.697799275	2	0.5294815	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	21780438	12A2p6	cell line	sgMsh2	21780438	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	249	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon2:c.G88A:p.D30N,Usp45:NM_152825:exon2:c.G88A:p.D30N"	4qA3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.457930774	2	5.90E-09	CGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	21931767	12A2p6	cell line	sgMsh2	21931767	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.25	17	0	0	NA	exonic	Faxc	synonymous SNV	Faxc:NM_175234:exon1:c.T204C:p.Y68Y	4qA3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.8849077	ATT	synonymous	NA	NA	NA	NA
22-1_par	chr4	22376725	12A2p6	cell line	sgMsh2	22376725	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	172	0	0	NA	exonic	Fbxl4	nonsynonymous SNV	Fbxl4:NM_172988:exon3:c.T160C:p.Y54H	4qA3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.9096355	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	24529085	12A2p6	cell line	sgMsh2	24529085	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	119	0	0	NA	exonic	Mms22l	synonymous SNV	Mms22l:NM_199467:exon11:c.T1221C:p.C407C	4qA3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.0996594	GTT	synonymous	TTG	8	TTGTTGTT	NA
22-1_par	chr4	32723100	12A2p6	cell line	sgMsh2	32723100	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	82	0	0	NA	exonic	Mdn1	synonymous SNV	Mdn1:NM_001081392:exon48:c.A7414C:p.R2472R	4qA5	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.7351178	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr4	34809488	12A2p6	cell line	sgMsh2	34809488	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	229	0	0	NA	exonic	Zfp292	synonymous SNV	Zfp292:NM_013889:exon8:c.A3570T:p.P1190P	4qA5	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.204978537	3	0.9997431	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr4	43537900	12A2p6	cell line	sgMsh2	43537900	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	198	0	0	NA	exonic	Tln1	nonsynonymous SNV	Tln1:NM_011602:exon43:c.A5621T:p.K1874M	4qA5	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8075665	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	49449265	12A2p6	cell line	sgMsh2	49449265	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	55	0	0	NA	exonic	Acnat1	nonsynonymous SNV	Acnat1:NM_001164565:exon2:c.T500A:p.F167Y	4qB1	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.780662938	1	0.9672946	AAA	nonsynonymous	CAAA	8	CAAACAAA	NA
22-1_par	chr4	52484050	12A2p6	cell line	sgMsh2	52484050	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	193	0	0	NA	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon24:c.G3280A:p.A1094T,Smc2:NM_008017:exon24:c.G3280A:p.A1094T"	4qB2	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.7377479	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	53035374	12A2p6	cell line	sgMsh2	53035374	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	121	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon49:c.T6608A:p.I2203K	4qB2	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9370796	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	53045802	12A2p6	cell line	sgMsh2	53045802	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	166	0	0	NA	exonic	Abca1	synonymous SNV	Abca1:NM_013454:exon39:c.T5355G:p.T1785T	4qB2	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr4	56741104	12A2p6	cell line	sgMsh2	56741104	T	C	SNV	Mutect2;Vardict	2	0.059	108	0	0	NA	exonic	Actl7b	nonsynonymous SNV	Actl7b:NM_025271:exon1:c.A253G:p.S85G	4qB3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.8347581	CTG	nonsynonymous	GCGCT	10	GCGCTGCGCT	NA
22-1_par	chr4	58072946	12A2p6	cell line	sgMsh2	58072946	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	68	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon37:c.C6362T:p.A2121V	4qB3	chr4-3554421-60070040	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.09543519	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	62085965	12A2p6	cell line	sgMsh2	62085965	T	A	SNV	Mutect2;Vardict	2	0.081	57	0	0	NA	exonic	Mup3	nonsynonymous SNV	Mup3:NM_001039544:exon3:c.A310T:p.M104L	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.353260883	2	0.797041	ATA	nonsynonymous	ATATA	10	ATATAATATA	NA
22-1_par	chr4	62338526	12A2p6	cell line	sgMsh2	62338526	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	64	0	0	NA	exonic	Fkbp15	nonsynonymous SNV	"Fkbp15:NM_001045528:exon7:c.C605G:p.A202G,Fkbp15:NM_001355385:exon7:c.C605G:p.A202G"	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.492820738	2	0.9943007	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	63133165	12A2p6	cell line	sgMsh2	63133165	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	68	0	0	NA	exonic	Zfp618	nonsynonymous SNV	"Zfp618:NM_001369113:exon14:c.A2083G:p.K695E,Zfp618:NM_001369114:exon14:c.A2086G:p.K696E,Zfp618:NM_001369119:exon14:c.A1918G:p.K640E,Zfp618:NM_001369115:exon15:c.A2014G:p.K672E,Zfp618:NM_001369117:exon15:c.A1915G:p.K639E,Zfp618:NM_001369118:exon15:c.A1918G:p.K640E,Zfp618:NM_028326:exon15:c.A1903G:p.K635E,Zfp618:NM_028327:exon15:c.A2182G:p.K728E,Zfp618:NM_001369116:exon16:c.A2011G:p.K671E"	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.501543229	2	0.995987	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	63144264	12A2p6	cell line	sgMsh2	63144264	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	70	0	0	NA	exonic	Ambp	nonsynonymous SNV	Ambp:NM_007443:exon8:c.A737G:p.Y246C	4qB3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.7983094	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	70281105	12A2p6	cell line	sgMsh2	70281105	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.132	38	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon18:c.C1962A:p.P654P,Cdk5rap2:NM_145990:exon21:c.C2781A:p.P927P"	4qC2	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.575684402	2	0.009937304	TGG	synonymous	NA	NA	NA	NA
22-1_par	chr4	70281192	12A2p6	cell line	sgMsh2	70281192	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	80	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon18:c.A1875G:p.K625K,Cdk5rap2:NM_145990:exon21:c.A2694G:p.K898K"	4qC2	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9605684	GTT	synonymous	NA	NA	NA	NA
22-1_par	chr4	74271208	12A2p6	cell line	sgMsh2	74271208	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	107	0	0	NA	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001172095:exon3:c.G210T:p.K70N,Kdm4c:NM_144787:exon3:c.G159T:p.K53N"	4qC3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	2	0.9821649	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	83004323	12A2p6	cell line	sgMsh2	83004323	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	125	0	0	NA	exonic	Frem1	nonsynonymous SNV	"Frem1:NM_177863:exon6:c.A1240G:p.T414A,Frem1:NM_001198811:exon7:c.A1240G:p.T414A"	4qC3	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9957167	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	86576793	12A2p6	cell line	sgMsh2	86576793	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	230	0	0	NA	exonic	Rraga	nonsynonymous SNV	Rraga:NM_178376:exon1:c.A875C:p.N292T	4qC4	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5623382	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	88408956	12A2p6	cell line	sgMsh2	88408956	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	387	0	0	NA	exonic	Focad	synonymous SNV	Focad:NM_001081184:exon43:c.T5283G:p.P1761P	4qC4	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr4	88850625	12A2p6	cell line	sgMsh2	88850625	A	G	SNV	Mutect2;Vardict	2	0.133	28	0	0	NA	exonic	Ifna1	nonsynonymous SNV	Ifna1:NM_010502:exon1:c.A539G:p.N180S	4qC4	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.580045647	2	0.09172532	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	96518052	12A2p6	cell line	sgMsh2	96518052	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.099	107	0	0	NA	exonic	Cyp2j6	nonsynonymous SNV	Cyp2j6:NM_010008:exon9:c.G1481A:p.R494H	4qC5	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	2	0.9987848	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	100953117	12A2p6	cell line	sgMsh2	100953117	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	67	0	0	NA	exonic	Cachd1	synonymous SNV	Cachd1:NM_198037:exon7:c.T915C:p.S305S	4qC6	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	0.8260351	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr4	101837911	12A2p6	cell line	sgMsh2	101837911	C	A	SNV	Mutect2;Vardict	2	0.031	346	0	0	NA	exonic	Pramel17	nonsynonymous SNV	Pramel17:NM_001033790:exon2:c.G202T:p.A68S	4qC6	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.10E-09	GCC	nonsynonymous	C	5	CCCCC	NA
22-1_par	chr4	102927480	12A2p6	cell line	sgMsh2	102927480	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	32	0	0	NA	exonic	Sgip1	synonymous SNV	"Sgip1:NM_001285862:exon12:c.A738G:p.R246R,Sgip1:NM_001285859:exon15:c.A831G:p.R277R,Sgip1:NM_001285860:exon15:c.A831G:p.R277R,Sgip1:NM_144906:exon16:c.A1332G:p.R444R,Sgip1:NM_001285852:exon17:c.A1416G:p.R472R"	4qC6	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.540794438	2	0.9208658	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr4	103231075	12A2p6	cell line	sgMsh2	103231075	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	125	0	0	NA	exonic	4921539E11Rik	synonymous SNV	"4921539E11Rik:NM_001163494:exon8:c.T933C:p.T311T,4921539E11Rik:NM_027612:exon9:c.T1236C:p.T412T"	4qC6	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9263579	TAG	synonymous	AGGTA	10	AGGTAAGGTA	NA
22-1_par	chr4	105010529	12A2p6	cell line	sgMsh2	105010529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	80	0	0	NA	exonic	Fyb2	synonymous SNV	"Fyb2:NM_001162980:exon16:c.A1884T:p.G628G,Fyb2:NM_001285953:exon16:c.A1803T:p.G601G,Fyb2:NM_001285952:exon17:c.A1962T:p.G654G"	4qC6	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.51898821	2	0.9976782	GAT	synonymous	NA	NA	NA	NA
22-1_par	chr4	106742241	12A2p6	cell line	sgMsh2	106742241	A	G	SNV	Mutect2;Vardict	2	0.051	105	0	0	NA	exonic	Fam151a	nonsynonymous SNV	Fam151a:NM_146149:exon3:c.A371G:p.Y124C	4qC7	chr4-60155018-112862394	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9616082	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	113942582	12A2p6	cell line	sgMsh2	113942582	A	C	SNV	Mutect2;MuSe;Vardict	3	0.069	246	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167876:exon3:c.T347G:p.V116G,Skint5:NM_001167878:exon3:c.T347G:p.V116G"	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	2	0.8425067	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	115456631	12A2p6	cell line	sgMsh2	115456631	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	107	0	0	NA	exonic	Cyp4a30b	synonymous SNV	Cyp4a30b:NM_001100185:exon4:c.A408G:p.K136K	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5891888	AAT	synonymous	NA	NA	NA	NA
22-1_par	chr4	115565059	12A2p6	cell line	sgMsh2	115565059	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	437	0	0	NA	exonic	Cyp4a31	nonsynonymous SNV	"Cyp4a31:NM_001252539:exon2:c.A239G:p.N80S,Cyp4a31:NM_201640:exon2:c.A239G:p.N80S"	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	1.56E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	116693829	12A2p6	cell line	sgMsh2	116693829	A	T	SNV	Mutect2;Vardict	2	0.055	131	0	0	NA	exonic	Prdx1	nonsynonymous SNV	Prdx1:NM_011034:exon5:c.A496T:p.T166S	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9471703	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	116979435	12A2p6	cell line	sgMsh2	116979435	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	176	0	0	NA	exonic	Zswim5	nonsynonymous SNV	Zswim5:NM_001029912:exon9:c.A1915G:p.S639G	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.6743106	AAG	nonsynonymous	ATGA	9	ATGAATGAA	NA
22-1_par	chr4	117111632	12A2p6	cell line	sgMsh2	117111632	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	98	0	0	NA	exonic	Ptch2	nonsynonymous SNV	"Ptch2:NM_001312903:exon19:c.T2128A:p.F710I,Ptch2:NM_008958:exon19:c.T3094A:p.F1032I"	4qD1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5444079	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	117675251	12A2p6	cell line	sgMsh2	117675251	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	58	0	0	NA	exonic	Dmap1	synonymous SNV	Dmap1:NM_023178:exon10:c.T1117C:p.L373L	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.8885631	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr4	118226333	12A2p6	cell line	sgMsh2	118226333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	56	0	0	NA	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon15:c.A2476G:p.T826A	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	0.999971	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	118829877	12A2p6	cell line	sgMsh2	118829877	A	G	SNV	Mutect2;MuSe;Vardict	3	0.055	501	0	0	NA	exonic	Olfr1333	synonymous SNV	Olfr1333:NM_207157:exon1:c.T562C:p.L188L	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9999417	AAG	synonymous	CAAGC	10	CAAGCCAAGC	NA
22-1_par	chr4	119209327	12A2p6	cell line	sgMsh2	119209327	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	227	0	0	NA	exonic	Tmem269	nonsynonymous SNV	Tmem269:NM_029198:exon6:c.T533C:p.I178T	4qD2.1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.152643591	3	0.9999986	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
22-1_par	chr4	121324780	12A2p6	cell line	sgMsh2	121324780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	331	0	0	NA	exonic	Gm12888	synonymous SNV	Gm12888:NM_001033791:exon1:c.A114G:p.P38P	4qD2.2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	2	0.999997	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr4	123472912	12A2p6	cell line	sgMsh2	123472912	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	251	0	0	NA	exonic	Macf1	synonymous SNV	Macf1:NM_001199136:exon36:c.C8055T:p.D2685D	4qD2.2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999894	TGT	synonymous	NA	NA	NA	NA
22-1_par	chr4	125071549	12A2p6	cell line	sgMsh2	125071549	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	56	0	0	NA	exonic	Snip1	nonsynonymous SNV	"Snip1:NM_001356560:exon3:c.A461G:p.Y154C,Snip1:NM_175246:exon3:c.A746G:p.Y249C"	4qD2.2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.79810792	1	0.9825731	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	127123883	12A2p6	cell line	sgMsh2	127123883	T	C	SNV	Mutect2;Vardict	2	0.033	196	0	0	NA	exonic	Zmym6	synonymous SNV	"Zmym6:NM_001285885:exon14:c.T3456C:p.T1152T,Zmym6:NM_001285887:exon14:c.T3180C:p.T1060T,Zmym6:NM_001285888:exon15:c.T3150C:p.T1050T,Zmym6:NM_177462:exon15:c.T3456C:p.T1152T"	4qD2.2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	0.9999962	CTG	synonymous	NA	NA	NA	NA
22-1_par	chr4	134155994	12A2p6	cell line	sgMsh2	134155994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	208	0	0	NA	exonic	Cep85	nonsynonymous SNV	Cep85:NM_144527:exon4:c.A583C:p.T195P	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.427402056	2	0.9999979	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	135814323	12A2p6	cell line	sgMsh2	135814323	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	106	0	0	NA	exonic	Myom3	synonymous SNV	Myom3:NM_001085509:exon37:c.A4224T:p.G1408G	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.5638575	GAA	synonymous	NA	NA	NA	NA
22-1_par	chr4	136693839	12A2p6	cell line	sgMsh2	136693839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	127	0	0	NA	exonic	Ephb2	nonsynonymous SNV	"Ephb2:NM_001290753:exon5:c.C1199T:p.A400V,Ephb2:NM_010142:exon5:c.C1199T:p.A400V"	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.523349456	2	0.9998151	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	137515381	12A2p6	cell line	sgMsh2	137515381	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	38	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon15:c.A1906G:p.I636V	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.009927463	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	139399606	12A2p6	cell line	sgMsh2	139399606	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	149	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon12:c.C1439T:p.A480V	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.913025	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	139784645	12A2p6	cell line	sgMsh2	139784645	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.102	65	0	0	NA	exonic	Pax7	frameshift deletion	Pax7:NM_011039:exon5:c.618delA:p.E206Dfs*5	4qD3	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.444847038	NA	NA	GTT	frameshift	NA	NA	NA	-1
22-1_par	chr4	143697289	12A2p6	cell line	sgMsh2	143697289	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	330	0	0	NA	exonic	Pramel23	nonsynonymous SNV	Pramel23:NM_001356572:exon4:c.T929A:p.L310Q	4qE1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.9546573	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	143699162	12A2p6	cell line	sgMsh2	143699162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	143	0	0	NA	exonic	Pramel23	nonsynonymous SNV	Pramel23:NM_001356572:exon2:c.A210G:p.I70M	4qE1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.9207187	TTA	nonsynonymous	ATC	8	ATCATCAT	NA
22-1_par	chr4	144157980	12A2p6	cell line	sgMsh2	144157980	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	266	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon4:c.G1385A:p.R462K	4qE1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999981	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	144159188	12A2p6	cell line	sgMsh2	144159188	A	G	SNV	Mutect2;Vardict	2	0.032	282	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.T839C:p.V280A	4qE1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.23E-08	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	147613802	12A2p6	cell line	sgMsh2	147613802	C	A	SNV	Mutect2;MuSe;Vardict	3	0.092	122	0	0	NA	exonic	Zfp979	nonsynonymous SNV	Zfp979:NM_145078:exon5:c.G449T:p.C150F	4qE1	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.997666	ACA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	148614258	12A2p6	cell line	sgMsh2	148614258	A	G	SNV	Mutect2;Strelka2	2	0.06	196	0	0	NA	exonic	Masp2	nonsynonymous SNV	Masp2:NM_001003893:exon11:c.A1795G:p.T599A	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.899042	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	148614360	12A2p6	cell line	sgMsh2	148614360	G	-	Deletion	Mutect2;Vardict	2	0.062	124	0	0	NA	exonic	Masp2	frameshift deletion	Masp2:NM_001003893:exon11:c.1897delG:p.A635Hfs*1	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	NA	NA	TGG	frameshift	G	5	GGGGG	-1
22-1_par	chr4	150614785	12A2p6	cell line	sgMsh2	150614785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.214	17	0	0	NA	exonic	Rere	synonymous SNV	Rere:NM_001085492:exon18:c.A2325G:p.P775P	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.93330653	1	0.8009212	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr4	150865426	12A2p6	cell line	sgMsh2	150865426	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	187	0	0	NA	exonic	Errfi1	nonsynonymous SNV	"Errfi1:NM_001356323:exon3:c.A185G:p.H62R,Errfi1:NM_133753:exon3:c.A185G:p.H62R"	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9864651	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	151979501	12A2p6	cell line	sgMsh2	151979501	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	105	0	0	NA	exonic	Dnajc11	nonsynonymous SNV	Dnajc11:NM_172704:exon14:c.A1439C:p.N480T	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.84281	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr4	152372135	12A2p6	cell line	sgMsh2	152372135	G	-	Deletion	Mutect2;Vardict	2	0.07	122	0	0	NA	exonic	Chd5	frameshift deletion	"Chd5:NM_001081376:exon19:c.2928delG:p.G978Vfs*10,Chd5:NM_001369243:exon19:c.2928delG:p.G978Vfs*10,Chd5:NM_029216:exon19:c.2928delG:p.G978Vfs*10"	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	NA	NA	AGG	frameshift	G	5	GGGGG	-1
22-1_par	chr4	152506462	12A2p6	cell line	sgMsh2	152506462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	51	0	0	NA	exonic	Nphp4	synonymous SNV	"Nphp4:NM_001355738:exon8:c.T915C:p.V305V,Nphp4:NM_001355739:exon8:c.T915C:p.V305V,Nphp4:NM_153424:exon8:c.T915C:p.V305V"	4qE2	chr4-113931465-156223608	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.65418682	2	0.653786	TTG	synonymous	TTGTGC	12	TTGTGCTTGTGC	NA
22-1_par	chr5	3840915	12A2p6	cell line	sgMsh2	3840915	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	203	0	0	NA	exonic	Krit1	synonymous SNV	"Krit1:NM_001170552:exon16:c.A2067G:p.Q689Q,Krit1:NM_030675:exon17:c.A2184G:p.Q728Q"	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9998092	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr5	4196561	12A2p6	cell line	sgMsh2	4196561	C	T	SNV	Mutect2;Vardict	2	0.029	376	0	0	NA	exonic	Mterf1b	synonymous SNV	Mterf1b:NM_001042670:exon2:c.C201T:p.G67G	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	1.00E-09	GCG	synonymous	NA	NA	NA	NA
22-1_par	chr5	8930769	12A2p6	cell line	sgMsh2	8930769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.048	470	0	0	NA	exonic	Abcb4	nonsynonymous SNV	Abcb4:NM_008830:exon15:c.A1750G:p.I584V	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	8993519	12A2p6	cell line	sgMsh2	8993519	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.085	417	0	0	NA	exonic	Crot	frameshift deletion	Crot:NM_023733:exon3:c.102delA:p.K34Nfs*5	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.370705865	NA	NA	ATT	frameshift	T	5	TTTTT	-1
22-1_par	chr5	14858801	12A2p6	cell line	sgMsh2	14858801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	227	0	0	NA	exonic	Pclo	nonsynonymous SNV	Pclo:NM_011995:exon25:c.C15122A:p.A5041D	5qA1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.401234583	2	0.9999914	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	21281511	12A2p6	cell line	sgMsh2	21281511	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	505	0	0	NA	exonic	Gsap	synonymous SNV	"Gsap:NM_001359876:exon25:c.T1917C:p.N639N,Gsap:NM_175437:exon26:c.T2010C:p.N670N"	5qA3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1	ATA	synonymous	NA	NA	NA	NA
22-1_par	chr5	22103375	12A2p6	cell line	sgMsh2	22103375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	148	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon10:c.A995G:p.D332G	5qA3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.453569528	2	0.9999814	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	23986138	12A2p6	cell line	sgMsh2	23986138	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	351	0	0	NA	exonic	Fam126a	nonsynonymous SNV	"Fam126a:NM_001310471:exon6:c.G530T:p.R177M,Fam126a:NM_053090:exon6:c.G530T:p.R177M"	5qA3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.07E-09	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	25265322	12A2p6	cell line	sgMsh2	25265322	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.028	339	0	0	NA	exonic	Galnt11	nonsynonymous SNV	"Galnt11:NM_001359890:exon12:c.T1768A:p.Y590N,Galnt11:NM_144908:exon12:c.T1768A:p.Y590N"	5qA3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	1.02E-09	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	30180338	12A2p6	cell line	sgMsh2	30180338	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	291	0	0	NA	exonic	Hadhb	nonsynonymous SNV	"Hadhb:NM_001289798:exon14:c.A1176C:p.K392N,Hadhb:NM_001289799:exon14:c.A1176C:p.K392N,Hadhb:NM_145558:exon14:c.A1176C:p.K392N"	5qB1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9845868	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	30864881	12A2p6	cell line	sgMsh2	30864881	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	180	0	0	NA	exonic	Mapre3	stopgain	"Mapre3:NM_001310516:exon5:c.C646T:p.R216X,Mapre3:NM_133350:exon6:c.C691T:p.R231X"	5qB1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.997539	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	33216750	12A2p6	cell line	sgMsh2	33216750	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.074	185	0	0	NA	exonic	Spon2	frameshift deletion	Spon2:NM_133903:exon3:c.288delT:p.F96Lfs*9	5qB1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.322732164	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-1_par	chr5	33879098	12A2p6	cell line	sgMsh2	33879098	A	T	SNV	Mutect2;Vardict	2	0.036	165	0	0	NA	exonic	Nsd2	nonsynonymous SNV	"Nsd2:NM_001081102:exon9:c.A1925T:p.Y642F,Nsd2:NM_175231:exon9:c.A1922T:p.Y641F"	5qB2	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999332	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	34122696	12A2p6	cell line	sgMsh2	34122696	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	233	0	0	NA	exonic	Poln	nonsynonymous SNV	"Poln:NM_001289803:exon5:c.A821T:p.D274V,Poln:NM_181857:exon5:c.A821T:p.D274V,Poln:NM_001289804:exon6:c.A821T:p.D274V"	5qB2	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9966139	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	48304123	12A2p6	cell line	sgMsh2	48304123	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.093	101	0	0	NA	exonic	Slit2	nonsynonymous SNV	"Slit2:NM_178804:exon36:c.G4448A:p.C1483Y,Slit2:NM_001291228:exon37:c.G4460A:p.C1487Y,Slit2:NM_001291227:exon39:c.G4511A:p.C1504Y"	5qB3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9941347	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	52368352	12A2p6	cell line	sgMsh2	52368352	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	29	0	0	NA	exonic	Sod3	nonsynonymous SNV	Sod3:NM_011435:exon2:c.A392T:p.E131V	5qC1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.872249093	1	0.9261162	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	72700720	12A2p6	cell line	sgMsh2	72700720	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	193	0	0	NA	exonic	Txk	nonsynonymous SNV	"Txk:NM_001289494:exon12:c.T1180A:p.L394M,Txk:NM_013698:exon12:c.T1246A:p.L416M,Txk:NM_001122754:exon13:c.T1246A:p.L416M,Txk:NM_001289495:exon13:c.T1084A:p.L362M"	5qC3.2	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.974944	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	73064565	12A2p6	cell line	sgMsh2	73064565	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	128	0	0	NA	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon47:c.A6337C:p.I2113L	5qC3.2	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7481018	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Strelka2;Vardict	2	0.069	116	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.300925937	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
22-1_par	chr5	87486108	12A2p6	cell line	sgMsh2	87486108	G	C	SNV	Mutect2;Vardict	2	0.031	208	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.C639G:p.N213K	5qE1	chr5-3344388-87674558	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	0.9999992	AGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	89710685	12A2p6	cell line	sgMsh2	89710685	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	399	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon6:c.T917C:p.V306A,Adamts3:NM_177872:exon6:c.T917C:p.V306A"	5qE1	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	90278265	12A2p6	cell line	sgMsh2	90278265	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	321	0	0	NA	exonic	Ankrd17	nonsynonymous SNV	"Ankrd17:NM_198010:exon15:c.C2447A:p.P816H,Ankrd17:NM_030886:exon16:c.C3200A:p.P1067H"	5qE1	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	1.08E-09	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	93154898	12A2p6	cell line	sgMsh2	93154898	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	314	0	0	NA	exonic	Septin11	nonsynonymous SNV	"Septin11:NM_001009818:exon4:c.G367A:p.A123T,Septin11:NM_001310669:exon4:c.G367A:p.A123T,Septin11:NM_001310671:exon4:c.G367A:p.A123T,Septin11:NM_001347377:exon4:c.G367A:p.A123T"	5qE2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.505904474	2	1.28E-09	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	97099581	12A2p6	cell line	sgMsh2	97099581	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	189	0	0	NA	exonic	Paqr3	nonsynonymous SNV	"Paqr3:NM_001359910:exon4:c.T667G:p.W223G,Paqr3:NM_198422:exon4:c.T667G:p.W223G"	5qE3	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8932929	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	102664088	12A2p6	cell line	sgMsh2	102664088	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	155	0	0	NA	exonic	Arhgap24	synonymous SNV	Arhgap24:NM_029270:exon3:c.T180G:p.T60T	5qE5	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9539213	CTA	synonymous	T	5	TTTTT	NA
22-1_par	chr5	104059772	12A2p6	cell line	sgMsh2	104059772	A	C	SNV	Mutect2;Vardict	2	0.026	96	0	0	NA	exonic	Nudt9	nonsynonymous SNV	Nudt9:NM_028794:exon6:c.A779C:p.E260A	5qE5	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	0.9995244	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	105607136	12A2p6	cell line	sgMsh2	105607136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	423	0	0	NA	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A776G:p.Y259C	5qE5	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.488459492	2	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	107507408	12A2p6	cell line	sgMsh2	107507408	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	242	0	0	NA	exonic	Btbd8	nonsynonymous SNV	"Btbd8:NM_001384112:exon6:c.A1536T:p.E512D,Btbd8:NM_001378266:exon17:c.A3072T:p.E1024D"	5qE5	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999976	AAC	nonsynonymous	CTGG	9	CTGGCTGGC	NA
22-1_par	chr5	107830927	12A2p6	cell line	sgMsh2	107830927	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	249	0	0	NA	exonic	Ube2d2b	stoploss	Ube2d2b:NM_001276397:exon1:c.G443T:p.X148L	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.9353152	TGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	107909885	12A2p6	cell line	sgMsh2	107909885	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	108	0	0	NA	exonic	Dipk1a	nonsynonymous SNV	Dipk1a:NM_026062:exon5:c.C806A:p.A269E	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.6660318	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	108846289	12A2p6	cell line	sgMsh2	108846289	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	231	0	0	NA	exonic	Vmn2r9	nonsynonymous SNV	"Vmn2r9:NM_001104621:exon4:c.A1493C:p.D498A,Vmn2r9:NM_001385191:exon4:c.A1493C:p.D498A"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.9941781	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	109091584	12A2p6	cell line	sgMsh2	109091584	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	742	0	0	NA	exonic	Vmn2r12	nonsynonymous SNV	"Vmn2r12:NM_001104623:exon3:c.A1112G:p.N371S,Vmn2r12:NM_001385229:exon3:c.A1112G:p.N371S"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1	GTT	nonsynonymous	TGT	8	TGTTGTTG	NA
22-1_par	chr5	110653259	12A2p6	cell line	sgMsh2	110653259	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.194	30	0	0	NA	exonic	Noc4l	nonsynonymous SNV	Noc4l:NM_153570:exon1:c.A81C:p.Q27H	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.84608162	1	0.0973624	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	114060111	12A2p6	cell line	sgMsh2	114060111	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	184	0	0	NA	exonic	Svop	nonsynonymous SNV	"Svop:NM_026805:exon5:c.A400C:p.M134L,Svop:NM_001359214:exon6:c.A397C:p.M133L"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9965244	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	115150904	12A2p6	cell line	sgMsh2	115150904	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	126	0	0	NA	exonic	Mlec	nonsynonymous SNV	Mlec:NM_175403:exon2:c.T323G:p.F108C	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5246364	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	115257134	12A2p6	cell line	sgMsh2	115257134	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	99	0	0	NA	exonic	Rnf10	nonsynonymous SNV	"Rnf10:NM_001302448:exon3:c.T394A:p.F132I,Rnf10:NM_001302449:exon3:c.T394A:p.F132I,Rnf10:NM_016698:exon3:c.T394A:p.F132I"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9830395	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	115479683	12A2p6	cell line	sgMsh2	115479683	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	97	0	0	NA	exonic	Sirt4	nonsynonymous SNV	"Sirt4:NM_001167691:exon4:c.C913A:p.L305M,Sirt4:NM_133760:exon4:c.C913A:p.L305M"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.388150846	2	0.9845887	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	115479788	12A2p6	cell line	sgMsh2	115479788	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.114	46	0	0	NA	exonic	Sirt4	nonsynonymous SNV	"Sirt4:NM_001167691:exon4:c.C808A:p.L270I,Sirt4:NM_133760:exon4:c.C808A:p.L270I"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.497181983	2	0.9737994	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	115619771	12A2p6	cell line	sgMsh2	115619771	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	196	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon55:c.A7534C:p.M2512L	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9907464	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	118000384	12A2p6	cell line	sgMsh2	118000384	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	92	0	0	NA	exonic	Fbxo21	nonsynonymous SNV	"Fbxo21:NM_001346588:exon10:c.A1373G:p.H458R,Fbxo21:NM_145564:exon10:c.A1394G:p.H465R"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9768067	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	120532967	12A2p6	cell line	sgMsh2	120532967	T	-	Deletion	Mutect2;Vardict	2	0.066	91	0	0	NA	exonic	Slc8b1	frameshift deletion	"Slc8b1:NM_001177595:exon14:c.1519delT:p.L507Yfs*29,Slc8b1:NM_001177594:exon15:c.1617delT:p.Y540Tfs*22,Slc8b1:NM_133221:exon16:c.1668delT:p.Y557Tfs*22"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-1_par	chr5	121493674	12A2p6	cell line	sgMsh2	121493674	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	133	0	0	NA	exonic	Tmem116	nonsynonymous SNV	"Tmem116:NM_001161626:exon8:c.A608G:p.K203R,Tmem116:NM_029912:exon8:c.A248G:p.K83R,Tmem116:NM_001161627:exon9:c.A713G:p.K238R"	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.9868445	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	121627357	12A2p6	cell line	sgMsh2	121627357	T	A	SNV	Mutect2;Vardict	2	0.058	115	0	0	NA	exonic	Acad10	nonsynonymous SNV	Acad10:NM_028037:exon17:c.A2552T:p.H851L	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.8719995	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	123480612	12A2p6	cell line	sgMsh2	123480612	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	374	0	0	NA	exonic	Il31	nonsynonymous SNV	Il31:NM_029594:exon4:c.A299G:p.E100G	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.02E-09	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	123790936	12A2p6	cell line	sgMsh2	123790936	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	72	0	0	NA	exonic	Kntc1	synonymous SNV	Kntc1:NM_001042421:exon39:c.G3774C:p.L1258L	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.962586	TGC	synonymous	CTCTG	13	CTCTGCTCTGCTC	NA
22-1_par	chr5	123954143	12A2p6	cell line	sgMsh2	123954143	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	253	0	0	NA	exonic	Ccdc62	nonsynonymous SNV	Ccdc62:NM_001134767:exon9:c.A1190C:p.D397A	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	124714225	12A2p6	cell line	sgMsh2	124714225	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	218	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon14:c.A1717G:p.N573D	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.9999994	TAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	124765615	12A2p6	cell line	sgMsh2	124765615	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	104	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon25:c.C4297T:p.R1433C	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9995801	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	124775464	12A2p6	cell line	sgMsh2	124775464	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	159	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon32:c.T5756A:p.M1919K	5qF	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9984951	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	127650749	12A2p6	cell line	sgMsh2	127650749	A	-	Deletion	Strelka2;Vardict	2	0.1068	103	0	0	NA	exonic	Glt1d1	frameshift deletion	Glt1d1:NM_177005:exon3:c.284delA:p.K97Rfs*20	5qG1.2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.465781016	NA	NA	GAA	frameshift	A	5	AAAAA	-1
22-1_par	chr5	128788295	12A2p6	cell line	sgMsh2	128788295	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	57	0	0	NA	exonic	Rimbp2	nonsynonymous SNV	"Rimbp2:NM_001310733:exon12:c.T1967C:p.M656T,Rimbp2:NM_001378900:exon12:c.T1967C:p.M656T,Rimbp2:NM_001081388:exon13:c.T1988C:p.M663T"	5qG1.3	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9485842	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	130213036	12A2p6	cell line	sgMsh2	130213036	T	G	SNV	Mutect2;Vardict	2	0.036	148	0	0	NA	exonic	Rabgef1	nonsynonymous SNV	"Rabgef1:NM_001359233:exon8:c.T704G:p.I235S,Rabgef1:NM_019983:exon8:c.T1280G:p.I427S,Rabgef1:NM_001199059:exon9:c.T1280G:p.I427S,Rabgef1:NM_001378873:exon9:c.T1283G:p.I428S"	5qG1.3	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9998283	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	134657935	12A2p6	cell line	sgMsh2	134657935	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	229	0	0	NA	exonic	Limk1	nonsynonymous SNV	"Limk1:NM_001305875:exon13:c.T1573C:p.F525L,Limk1:NM_010717:exon14:c.T1597C:p.F533L"	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	135734865	12A2p6	cell line	sgMsh2	135734865	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	156	0	0	NA	exonic	Por	nonsynonymous SNV	Por:NM_008898:exon16:c.G1945T:p.A649S	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9996295	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	137426299	12A2p6	cell line	sgMsh2	137426299	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	69	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon39:c.A7726C:p.K2576Q	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	2	0.8683249	TTG	nonsynonymous	TGCC	10	TGCCTGCCTG	NA
22-1_par	chr5	137831244	12A2p6	cell line	sgMsh2	137831244	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.028	272	0	0	NA	exonic	Pilra	nonsynonymous SNV	Pilra:NM_153510:exon3:c.C557T:p.A186V	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	3.56E-09	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	138174975	12A2p6	cell line	sgMsh2	138174975	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.125	90	0	0	NA	exonic	Ap4m1	frameshift deletion	Ap4m1:NM_021392:exon6:c.494delC:p.P166Qfs*32	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.545155683	NA	NA	GCC	frameshift	NA	NA	NA	-1
22-1_par	chr5	138647828	12A2p6	cell line	sgMsh2	138647828	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	273	0	0	NA	exonic	A430033K04Rik	synonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1974G:p.K658K	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	2.40E-09	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr5	140346338	12A2p6	cell line	sgMsh2	140346338	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	344	0	0	NA	exonic	Snx8	nonsynonymous SNV	Snx8:NM_172277:exon8:c.A908G:p.K303R	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9999993	CTT	nonsynonymous	CTC	8	CTCCTCCT	NA
22-1_par	chr5	142497850	12A2p6	cell line	sgMsh2	142497850	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	34	0	0	NA	exonic	Radil	synonymous SNV	"Radil:NM_001289588:exon6:c.C1600T:p.L534L,Radil:NM_001310752:exon6:c.C1687T:p.L563L,Radil:NM_178702:exon6:c.C1600T:p.L534L"	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.75013422	1	0.7082577	AGC	synonymous	CTC	10	CTCCTCCTCC	NA
22-1_par	chr5	142992797	12A2p6	cell line	sgMsh2	142992797	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	100	0	0	NA	exonic	Rnf216	nonsynonymous SNV	"Rnf216:NM_001359851:exon16:c.A1841C:p.N614T,Rnf216:NM_080561:exon17:c.A2414C:p.N805T,Rnf216:NM_207110:exon17:c.A2585C:p.N862T"	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5907026	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	143068320	12A2p6	cell line	sgMsh2	143068320	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	223	0	0	NA	exonic	Rnf216	synonymous SNV	"Rnf216:NM_001359851:exon12:c.A1278G:p.R426R,Rnf216:NM_080561:exon13:c.A1851G:p.R617R,Rnf216:NM_207110:exon13:c.A2022G:p.R674R"	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9988434	TTC	synonymous	NA	NA	NA	NA
22-1_par	chr5	144011480	12A2p6	cell line	sgMsh2	144011480	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	466	0	0	NA	exonic	Ccz1	nonsynonymous SNV	Ccz1:NM_177682:exon4:c.T356C:p.V119A	5qG2	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	1.85E-09	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	146835620	12A2p6	cell line	sgMsh2	146835620	A	G	SNV	Mutect2;Vardict	2	0.031	546	0	0	NA	exonic	Rpl21	nonsynonymous SNV	Rpl21:NM_019647:exon5:c.A299G:p.K100R	5qG3	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr5	150542594	12A2p6	cell line	sgMsh2	150542594	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	503	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon11:c.T5822C:p.V1941A,Brca2:NM_009765:exon11:c.T5822C:p.V1941A"	5qG3	chr5-87677374-151647482	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	1	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	5915835	12A2p6	cell line	sgMsh2	5915835	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	391	0	0	NA	exonic	Dync1i1	nonsynonymous SNV	"Dync1i1:NM_001191023:exon8:c.T740C:p.V247A,Dync1i1:NM_001191025:exon8:c.T689C:p.V230A,Dync1i1:NM_001191027:exon8:c.T656C:p.V219A,Dync1i1:NM_001191026:exon9:c.T716C:p.V239A,Dync1i1:NM_010063:exon9:c.T749C:p.V250A"	6qA1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	15437921	12A2p6	cell line	sgMsh2	15437921	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	413	0	0	NA	exonic	Foxp2	nonsynonymous SNV	"Foxp2:NM_001286607:exon17:c.A1982G:p.E661G,Foxp2:NM_212435:exon17:c.A2045G:p.E682G,Foxp2:NM_053242:exon19:c.A2045G:p.E682G"	6qA1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	17492418	12A2p6	cell line	sgMsh2	17492418	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	265	0	0	NA	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon3:c.A1178G:p.H393R	6qA2	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9999731	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	29361428	12A2p6	cell line	sgMsh2	29361428	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	211	0	0	NA	exonic	Calu	nonsynonymous SNV	Calu:NM_007594:exon3:c.A356C:p.N119T	6qA3.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	29490447	12A2p6	cell line	sgMsh2	29490447	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	51	0	0	NA	exonic	Kcp	synonymous SNV	Kcp:NM_001029985:exon27:c.C2997T:p.S999S	6qA3.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.427402056	2	0.9452597	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr6	34799756	12A2p6	cell line	sgMsh2	34799756	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	233	0	0	NA	exonic	Agbl3	nonsynonymous SNV	"Agbl3:NM_001289657:exon7:c.T467G:p.F156C,Agbl3:NM_178630:exon7:c.T1181G:p.F394C,Agbl3:NM_001289656:exon8:c.T1196G:p.F399C"	6qB1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9978449	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	35052937	12A2p6	cell line	sgMsh2	35052937	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	159	0	0	NA	exonic	Cnot4	nonsynonymous SNV	"Cnot4:NM_001164411:exon9:c.A1025G:p.N342S,Cnot4:NM_001164412:exon9:c.A1025G:p.N342S,Cnot4:NM_001164413:exon9:c.A1025G:p.N342S,Cnot4:NM_001164414:exon9:c.A1034G:p.N345S,Cnot4:NM_016877:exon9:c.A1034G:p.N345S"	6qB1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9996789	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	38382152	12A2p6	cell line	sgMsh2	38382152	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	146	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon2:c.T80G:p.I27S	6qB1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.580045647	2	0.9929987	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	41625211	12A2p6	cell line	sgMsh2	41625211	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	268	0	0	NA	exonic	Trpv6	nonsynonymous SNV	Trpv6:NM_022413:exon8:c.A1163G:p.Y388C	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.73E-08	GTA	nonsynonymous	GCGG	8	GCGGGCGG	NA
22-1_par	chr6	41674944	12A2p6	cell line	sgMsh2	41674944	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	419	0	0	NA	exonic	Trpv5	nonsynonymous SNV	Trpv5:NM_001007572:exon5:c.A536G:p.H179R	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	42247530	12A2p6	cell line	sgMsh2	42247530	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	432	0	0	NA	exonic	Gstk1	nonsynonymous SNV	Gstk1:NM_029555:exon4:c.A330C:p.Q110H	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	4.79E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	42624552	12A2p6	cell line	sgMsh2	42624552	A	-	Deletion	Mutect2;Vardict	2	0.055	165	0	0	NA	exonic	Tcaf2	frameshift deletion	Tcaf2:NM_146174:exon8:c.2572delT:p.Y858Tfs*9	6qB2.1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	NA	NA	TAA	frameshift	A	5	AAAAA	-1
22-1_par	chr6	47576624	12A2p6	cell line	sgMsh2	47576624	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	148	0	0	NA	exonic	Ezh2	nonsynonymous SNV	"Ezh2:NM_001146689:exon3:c.C158A:p.T53N,Ezh2:NM_007971:exon3:c.C158A:p.T53N"	6qB2.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9120098	AGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	48702529	12A2p6	cell line	sgMsh2	48702529	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	61	0	0	NA	exonic	Gimap6	nonsynonymous SNV	Gimap6:NM_153175:exon3:c.T572G:p.V191G	6qB2.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.580045647	2	0.9526124	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	48976518	12A2p6	cell line	sgMsh2	48976518	T	C	SNV	Mutect2;Vardict	2	0.029	265	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.T1376C:p.F459S	6qB2.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.126476119	3	8.05E-09	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	50574244	12A2p6	cell line	sgMsh2	50574244	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	406	0	0	NA	exonic	4921507P07Rik	synonymous SNV	4921507P07Rik:NM_027564:exon10:c.T1224C:p.C408C	6qB2.3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.00E-09	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr6	55053200	12A2p6	cell line	sgMsh2	55053200	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	197	0	0	NA	exonic	Gars	nonsynonymous SNV	Gars:NM_180678:exon6:c.G700A:p.A234T	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9999834	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	55173449	12A2p6	cell line	sgMsh2	55173449	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	104	0	0	NA	exonic	Inmt	nonsynonymous SNV	Inmt:NM_009349:exon2:c.A202G:p.T68A	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9864517	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	57137589	12A2p6	cell line	sgMsh2	57137589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	386	0	0	NA	exonic	Vmn1r11	synonymous SNV	Vmn1r11:NM_053233:exon1:c.T237G:p.T79T	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.47101451	2	1.00E-09	CTT	synonymous	T	5	TTTTT	NA
22-1_par	chr6	57258903	12A2p6	cell line	sgMsh2	57258903	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	389	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T755C:p.L252P	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	57432412	12A2p6	cell line	sgMsh2	57432412	A	G	SNV	Mutect2;MuSe;Vardict	3	0.043	606	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.A722G:p.Y241C	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	61311852	12A2p6	cell line	sgMsh2	61311852	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	136	0	0	NA	exonic	Ccser1	nonsynonymous SNV	"Ccser1:NM_001164316:exon2:c.T998A:p.L333Q,Ccser1:NM_183310:exon2:c.T998A:p.L333Q"	6qB3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	2	0.9291845	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	64345643	12A2p6	cell line	sgMsh2	64345643	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	127	0	0	NA	exonic	Grid2	nonsynonymous SNV	"Grid2:NM_001370966:exon11:c.C1626A:p.D542E,Grid2:NM_008167:exon11:c.C1626A:p.D542E"	6qC1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7471698	ACT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	77244504	12A2p6	cell line	sgMsh2	77244504	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	76	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.C943T:p.L315L,Lrrtm1:NM_028880:exon2:c.C943T:p.L315L"	6qC3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	2	0.8932047	CCT	synonymous	NA	NA	NA	NA
22-1_par	chr6	81935915	12A2p6	cell line	sgMsh2	81935915	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.158	25	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon5:c.A694G:p.T232A	6qC3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.689076784	2	0.6477234	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	85467081	12A2p6	cell line	sgMsh2	85467081	T	C	SNV	Mutect2;Vardict	2	0.026	238	0	0	NA	exonic	Cct7	synonymous SNV	Cct7:NM_007638:exon10:c.T1125C:p.R375R	6qC3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.24E-08	GTG	synonymous	NA	NA	NA	NA
22-1_par	chr6	85620132	12A2p6	cell line	sgMsh2	85620132	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	85	0	0	NA	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon8:c.T1939G:p.S647A	6qC3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7060171	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	89894098	12A2p6	cell line	sgMsh2	89894098	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.021	605	0	0	NA	exonic	Vmn1r44	synonymous SNV	Vmn1r44:NM_053227:exon1:c.T825C:p.I275I	6qD1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.091586155	3	1	TTA	synonymous	NA	NA	NA	NA
22-1_par	chr6	90036384	12A2p6	cell line	sgMsh2	90036384	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	731	0	0	NA	exonic	Vmn1r48	nonsynonymous SNV	Vmn1r48:NM_053218:exon1:c.C458T:p.S153F	6qD1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	4.86E-08	GGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	92175106	12A2p6	cell line	sgMsh2	92175106	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	88	0	0	NA	exonic	Mrps25	synonymous SNV	Mrps25:NM_025578:exon4:c.A432G:p.E144E	6qD1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.6172675	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr6	94535758	12A2p6	cell line	sgMsh2	94535758	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.062	221	0	0	NA	exonic	Slc25a26	frameshift deletion	Slc25a26:NM_026255:exon5:c.443delT:p.L149fs*0	6qD2	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	NA	NA	GTT	frameshift	NA	NA	NA	-1
22-1_par	chr6	113716234	12A2p6	cell line	sgMsh2	113716234	T	-	Deletion	Mutect2;Vardict	2	0.048	179	0	0	NA	exonic	Ghrl	stoploss	Ghrl:NM_001286405:exon3:c.261delA:p.*87delinsCPRAFLLLSKNSHPPQPPRQLPALSYHFKNKCSPVCQMF	6qE3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	NA	NA	GTC	nonsynonymous	G	5	GGGGG	-1
22-1_par	chr6	115472943	12A2p6	cell line	sgMsh2	115472943	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	263	0	0	NA	exonic	Pparg	nonsynonymous SNV	"Pparg:NM_011146:exon6:c.A902T:p.Q301L,Pparg:NM_001127330:exon7:c.A812T:p.Q271L,Pparg:NM_001308352:exon7:c.A812T:p.Q271L,Pparg:NM_001308354:exon7:c.A812T:p.Q271L"	6qE3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9999517	CAG	nonsynonymous	GAGCA	10	GAGCAGAGCA	NA
22-1_par	chr6	115849214	12A2p6	cell line	sgMsh2	115849214	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	107	0	0	NA	exonic	Mbd4	nonsynonymous SNV	Mbd4:NM_010774:exon3:c.A815C:p.N272T	6qE3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.6636662	GTT	nonsynonymous	GTTGA	10	GTTGAGTTGA	NA
22-1_par	chr6	116285890	12A2p6	cell line	sgMsh2	116285890	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	798	0	0	NA	exonic	Zfand4	synonymous SNV	Zfand4:NM_001309446:exon4:c.T375C:p.A125A	6qE3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.100308646	3	1	CTA	synonymous	NA	NA	NA	NA
22-1_par	chr6	118610509	12A2p6	cell line	sgMsh2	118610509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	355	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon33:c.G3895A:p.A1299T,Cacna1c:NM_001159533:exon38:c.G4705A:p.A1569T,Cacna1c:NM_001159534:exon38:c.G4705A:p.A1569T,Cacna1c:NM_001159535:exon38:c.G4699A:p.A1567T,Cacna1c:NM_001255997:exon38:c.G4795A:p.A1599T,Cacna1c:NM_001255999:exon38:c.G4795A:p.A1599T,Cacna1c:NM_001256000:exon38:c.G4747A:p.A1583T,Cacna1c:NM_001256001:exon38:c.G4756A:p.A1586T,Cacna1c:NM_009781:exon38:c.G4795A:p.A1599T,Cacna1c:NM_001255998:exon39:c.G4870A:p.A1624T,Cacna1c:NM_001256002:exon39:c.G4954A:p.A1652T"	6qF1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.361983374	2	0.9999954	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	119594877	12A2p6	cell line	sgMsh2	119594877	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	118	0	0	NA	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon20:c.A3133C:p.I1045L	6qF1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9570632	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	120492075	12A2p6	cell line	sgMsh2	120492075	A	T	SNV	Mutect2;Vardict	2	0.103	33	0	0	NA	exonic	Tmem121b	nonsynonymous SNV	Tmem121b:NM_033567:exon1:c.T1680A:p.H560Q	6qF1	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.449208283	2	0.8757742	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	123713006	12A2p6	cell line	sgMsh2	123713006	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	647	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.A840T:p.T280T	6qF2	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	1	CAT	synonymous	NA	NA	NA	NA
22-1_par	chr6	123816016	12A2p6	cell line	sgMsh2	123816016	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	303	0	0	NA	exonic	Vmn2r24	synonymous SNV	Vmn2r24:NM_001104639:exon6:c.C2301T:p.S767S	6qF2	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.200617291	3	0.9999886	GCT	synonymous	GCTT	8	GCTTGCTT	NA
22-1_par	chr6	128575608	12A2p6	cell line	sgMsh2	128575608	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.019	274	0	0	NA	exonic	A2ml1	synonymous SNV	A2ml1:NM_001001179:exon7:c.A666G:p.E222E	6qF3	chr6-3373003-129638907	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.082863664	3	1.02E-09	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr6	130016688	12A2p6	cell line	sgMsh2	130016688	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	524	0	0	NA	exonic	Klra19;Klra6	stopgain	"Klra6:NM_008464:exon6:c.A619T:p.K207X,Klra19:NM_053154:exon6:c.A619T:p.K207X"	6qF3	chr6-129638908-131690327	4	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	0.157004837	3	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	130065199	12A2p6	cell line	sgMsh2	130065199	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	156	0	0	NA	exonic	Klra18;Klra4	nonsynonymous SNV	"Klra4:NM_001252577:exon2:c.G104A:p.R35H,Klra4:NM_010649:exon2:c.G104A:p.R35H,Klra18:NM_053153:exon2:c.G104A:p.R35H"	6qF3	chr6-129638908-131690327	4	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	0.296564692	2	0.644099	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	130185588	12A2p6	cell line	sgMsh2	130185588	T	C	SNV	Mutect2;Vardict	2	0.036	934	0	0	NA	exonic	Klra9	nonsynonymous SNV	Klra9:NM_010651:exon5:c.A484G:p.T162A	6qF3	chr6-129638908-131690327	4	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	0.157004837	3	1	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	134467586	12A2p6	cell line	sgMsh2	134467586	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	137	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon15:c.T3320G:p.L1107W	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.009990712	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	134507433	12A2p6	cell line	sgMsh2	134507433	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	227	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon6:c.C1226A:p.A409D	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.9906896	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	134513257	12A2p6	cell line	sgMsh2	134513257	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	349	0	0	NA	exonic	Lrp6	synonymous SNV	Lrp6:NM_008514:exon4:c.T810C:p.D270D	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	1.32E-09	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr6	135015837	12A2p6	cell line	sgMsh2	135015837	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	260	0	0	NA	exonic	Ddx47	nonsynonymous SNV	Ddx47:NM_026360:exon5:c.T458C:p.L153P	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	135079098	12A2p6	cell line	sgMsh2	135079098	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	224	0	0	NA	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon2:c.T542C:p.M181T	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9998725	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	136926723	12A2p6	cell line	sgMsh2	136926723	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	241	0	0	NA	exonic	Arhgdib	nonsynonymous SNV	"Arhgdib:NM_001301308:exon4:c.A103G:p.I35V,Arhgdib:NM_001301309:exon4:c.A103G:p.I35V,Arhgdib:NM_001301301:exon5:c.A352G:p.I118V,Arhgdib:NM_001301303:exon5:c.A352G:p.I118V,Arhgdib:NM_001301305:exon5:c.A352G:p.I118V,Arhgdib:NM_007486:exon5:c.A352G:p.I118V"	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9995645	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	138657589	12A2p6	cell line	sgMsh2	138657589	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	113	0	0	NA	exonic	Igbp1b	stopgain	Igbp1b:NM_015777:exon1:c.C856T:p.Q286X	6qG1	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5878899	TGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	142656647	12A2p6	cell line	sgMsh2	142656647	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.02	867	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_021042:exon16:c.G1934A:p.S645N,Abcc9:NM_001044720:exon17:c.G2039A:p.S680N,Abcc9:NM_001310143:exon17:c.G2039A:p.S680N,Abcc9:NM_011511:exon17:c.G2039A:p.S680N,Abcc9:NM_021041:exon17:c.G2039A:p.S680N"	6qG2	chr6-132626356-148425959	5	3	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.087224909	3	1	ACT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr6	149326406	12A2p6	cell line	sgMsh2	149326406	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	113	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.T949C:p.F317L,Resf1:NM_026054:exon3:c.T949C:p.F317L,Resf1:NM_001289661:exon4:c.T949C:p.F317L"	6qG3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	4009747	12A2p6	cell line	sgMsh2	4009747	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	106	0	0	NA	exonic	Lair1	nonsynonymous SNV	"Lair1:NM_001302676:exon6:c.T370C:p.S124P,Lair1:NM_001302677:exon6:c.T289C:p.S97P,Lair1:NM_001302675:exon7:c.T619C:p.S207P,Lair1:NM_001302682:exon7:c.T671C:p.L224P,Lair1:NM_001302683:exon7:c.T391C:p.S131P,Lair1:NM_178611:exon7:c.T406C:p.S136P,Lair1:NM_001113474:exon8:c.T736C:p.S246P,Lair1:NM_001302681:exon8:c.T721C:p.S241P"	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9693265	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	4276626	12A2p6	cell line	sgMsh2	4276626	T	A	SNV	Mutect2;Vardict	2	0.024	338	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon5:c.T849A:p.P283P	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.104669891	3	1.00E-09	CTT	synonymous	NA	NA	NA	NA
22-1_par	chr7	6440140	12A2p6	cell line	sgMsh2	6440140	T	C	SNV	Mutect2;Vardict	2	0.095	48	0	0	NA	exonic	Olfr1344	nonsynonymous SNV	Olfr1344:NM_177061:exon1:c.T239C:p.L80P	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9151957	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	6678211	12A2p6	cell line	sgMsh2	6678211	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	28	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon8:c.A452G:p.N151S	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.8706186	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	6711869	12A2p6	cell line	sgMsh2	6711869	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	216	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon8:c.T472C:p.Y158H	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.8625756	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	6716130	12A2p6	cell line	sgMsh2	6716130	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	114	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon6:c.C218A:p.P73H	7qA1	chr7-3489139-8258069	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8119452	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	9094725	12A2p6	cell line	sgMsh2	9094725	T	G	SNV	Mutect2;Vardict	2	0.077	64	0	0	NA	exonic	Vmn2r38	nonsynonymous SNV	Vmn2r38:NM_001105070:exon2:c.A368C:p.Q123P	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.749186	TTG	nonsynonymous	T	5	TTTTT	NA
22-1_par	chr7	10098221	12A2p6	cell line	sgMsh2	10098221	C	T	SNV	Mutect2;Vardict	2	0.021	802	0	0	NA	exonic	Vmn2r51	synonymous SNV	Vmn2r51:NM_001105179:exon4:c.G1437A:p.K479K	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.091586155	3	1	TCT	synonymous	NA	NA	NA	NA
22-1_par	chr7	10715510	12A2p6	cell line	sgMsh2	10715510	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.T1639A:p.F547I,Nlrp4b:NM_172481:exon4:c.T1639A:p.F547I"	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.6447369	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	12416361	12A2p6	cell line	sgMsh2	12416361	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	152	0	0	NA	exonic	Zfp551	nonsynonymous SNV	Zfp551:NM_001033820:exon4:c.T1120C:p.F374L	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7697784	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	12416513	12A2p6	cell line	sgMsh2	12416513	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	146	0	0	NA	exonic	Zfp551	nonsynonymous SNV	Zfp551:NM_001033820:exon4:c.G968A:p.R323H	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9986021	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	12715669	12A2p6	cell line	sgMsh2	12715669	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	292	0	0	NA	exonic	Vmn2r56	nonsynonymous SNV	Vmn2r56:NM_001104648:exon2:c.T641C:p.L214S	7qA1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	1.20E-09	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	15978766	12A2p6	cell line	sgMsh2	15978766	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	54	0	0	NA	exonic	Bicra	nonsynonymous SNV	Bicra:NM_001081418:exon9:c.G3139A:p.A1047T	7qA2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.42304081	2	0.9499345	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	15988149	12A2p6	cell line	sgMsh2	15988149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	102	0	0	NA	exonic	Bicra	nonsynonymous SNV	Bicra:NM_001081418:exon5:c.T1442C:p.V481A	7qA2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.42304081	2	0.9974795	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	17973646	12A2p6	cell line	sgMsh2	17973646	T	C	SNV	Mutect2;Strelka2	2	0.028	226	0	0	NA	exonic	Ceacam11	synonymous SNV	Ceacam11:NM_023289:exon2:c.T354C:p.G118G	7qA2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	0.9999999	GTT	synonymous	NA	NA	NA	NA
22-1_par	chr7	18346111	12A2p6	cell line	sgMsh2	18346111	A	G	SNV	Mutect2;Vardict	2	0.041	520	0	0	NA	exonic	Psg18	synonymous SNV	Psg18:NM_011963:exon5:c.T1164C:p.P388P	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	1.03E-09	CAG	synonymous	NA	NA	NA	NA
22-1_par	chr7	19023391	12A2p6	cell line	sgMsh2	19023391	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	19	0	0	NA	exonic	Foxa3	synonymous SNV	Foxa3:NM_008260:exon1:c.T27C:p.A9A	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.872249093	1	0.7483206	GAG	synonymous	NA	NA	NA	NA
22-1_par	chr7	19856116	12A2p6	cell line	sgMsh2	19856116	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	68	0	0	NA	exonic	Ceacam16	nonsynonymous SNV	Ceacam16:NM_001033419:exon4:c.A901C:p.T301P	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.9955928	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	23355185	12A2p6	cell line	sgMsh2	23355185	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	308	0	0	NA	exonic	Nlrp4e	synonymous SNV	Nlrp4e:NM_001004194:exon8:c.A2763T:p.G921G	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.305287183	2	0.9434034	GAA	synonymous	NA	NA	NA	NA
22-1_par	chr7	25060627	12A2p6	cell line	sgMsh2	25060627	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	199	0	0	NA	exonic	Grik5	nonsynonymous SNV	"Grik5:NM_001360067:exon8:c.T173C:p.F58S,Grik5:NM_008168:exon8:c.T746C:p.F249S"	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9999677	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	27032585	12A2p6	cell line	sgMsh2	27032585	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	170	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.A750C:p.K250N	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	27160397	12A2p6	cell line	sgMsh2	27160397	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	126	0	0	NA	exonic	Egln2	nonsynonymous SNV	"Egln2:NM_001357767:exon2:c.C527T:p.A176V,Egln2:NM_053208:exon3:c.C890T:p.A297V"	7qA3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.532071947	2	0.9996379	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	28794892	12A2p6	cell line	sgMsh2	28794892	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	98	0	0	NA	exonic	Rinl	synonymous SNV	"Rinl:NM_001358916:exon5:c.C387T:p.S129S,Rinl:NM_177158:exon5:c.C387T:p.S129S"	7qB1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.366344619	2	0.9627424	GCA	synonymous	CAGC	8	CAGCCAGC	NA
22-1_par	chr7	41837168	12A2p6	cell line	sgMsh2	41837168	A	G	SNV	Mutect2;MuSe;Vardict	3	0.052	583	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon6:c.T2302C:p.F768L	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9999996	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	42136409	12A2p6	cell line	sgMsh2	42136409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	183	0	0	NA	exonic	Vmn2r60	nonsynonymous SNV	Vmn2r60:NM_001105057:exon3:c.T635C:p.V212A	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.431763301	2	0.9999925	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	42447656	12A2p6	cell line	sgMsh2	42447656	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	233	0	0	NA	exonic	4933421I07Rik	nonsynonymous SNV	"4933421I07Rik:NM_001370772:exon2:c.T230C:p.I77T,4933421I07Rik:NM_027702:exon2:c.T230C:p.I77T"	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9966139	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	43408934	12A2p6	cell line	sgMsh2	43408934	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.13	23	0	0	NA	exonic	Siglecg	nonsynonymous SNV	"Siglecg:NM_001382486:exon3:c.G244T:p.V82L,Siglecg:NM_172900:exon3:c.G244T:p.V82L"	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.566961911	2	0.8449113	AGT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	44116814	12A2p6	cell line	sgMsh2	44116814	A	T	SNV	Mutect2;Vardict	2	0.036	409	0	0	NA	exonic	Klk1b22	nonsynonymous SNV	Klk1b22:NM_010114:exon5:c.A718T:p.I240F	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.157004837	3	1.09E-09	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	44255245	12A2p6	cell line	sgMsh2	44255245	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.182	26	0	0	NA	exonic	Acp4	nonsynonymous SNV	Acp4:NM_001195034:exon5:c.T472C:p.C158R	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.793746675	1	0.7187781	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	45007430	12A2p6	cell line	sgMsh2	45007430	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	114	0	0	NA	exonic	Scaf1	nonsynonymous SNV	Scaf1:NM_001008422:exon7:c.C2024A:p.P675H	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.27911971	3	0.640152	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	45207793	12A2p6	cell line	sgMsh2	45207793	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.186	20	0	0	NA	exonic	Dkkl1	nonsynonymous SNV	Dkkl1:NM_015789:exon5:c.A490G:p.R164G	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.811191657	1	0.6309689	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	45369314	12A2p6	cell line	sgMsh2	45369314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	131	0	0	NA	exonic	Lin7b	nonsynonymous SNV	Lin7b:NM_011698:exon4:c.G265A:p.A89T	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.741411729	1	0.9993778	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	46014215	12A2p6	cell line	sgMsh2	46014215	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	43	0	0	NA	exonic	Abcc6	nonsynonymous SNV	Abcc6:NM_018795:exon9:c.T1024G:p.S342A	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9679176	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	46427591	12A2p6	cell line	sgMsh2	46427591	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	118	0	0	NA	exonic	Kcnc1	nonsynonymous SNV	"Kcnc1:NM_001112739:exon2:c.A816T:p.E272D,Kcnc1:NM_008421:exon2:c.A816T:p.E272D"	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.357622128	2	0.9720724	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	46427981	12A2p6	cell line	sgMsh2	46427981	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	196	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1206A:p.G402G,Kcnc1:NM_008421:exon2:c.C1206A:p.G402G"	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.628019347	2	0.682153	GCT	synonymous	NA	NA	NA	NA
22-1_par	chr7	46788256	12A2p6	cell line	sgMsh2	46788256	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	120	0	0	NA	exonic	Hps5	nonsynonymous SNV	"Hps5:NM_001005247:exon5:c.G394A:p.D132N,Hps5:NM_001005248:exon5:c.G394A:p.D132N,Hps5:NM_001167864:exon5:c.G394A:p.D132N"	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7405825	TCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	47189271	12A2p6	cell line	sgMsh2	47189271	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.028	306	0	0	NA	exonic	Mrgpra6	nonsynonymous SNV	Mrgpra6:NM_001308537:exon1:c.A85T:p.I29F	7qB3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	1.23E-09	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	50599681	12A2p6	cell line	sgMsh2	50599681	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	282	0	0	NA	exonic	4933405O20Rik	synonymous SNV	4933405O20Rik:NM_172901:exon1:c.A462T:p.R154R	7qB4	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9941719	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr7	56324769	12A2p6	cell line	sgMsh2	56324769	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	153	0	0	NA	exonic	Oca2	nonsynonymous SNV	Oca2:NM_021879:exon14:c.T1465A:p.S489T	7qB5	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9169806	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	63107708	12A2p6	cell line	sgMsh2	63107708	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	107	0	0	NA	exonic	Chrna7	nonsynonymous SNV	Chrna7:NM_007390:exon6:c.A442C:p.S148R	7qC	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.5655112	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	67047505	12A2p6	cell line	sgMsh2	67047505	C	T	SNV	Mutect2;Vardict	2	0.052	98	0	0	NA	exonic	Adamts17	synonymous SNV	Adamts17:NM_001033877:exon14:c.C1926T:p.S642S	7qC	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9451066	CCC	synonymous	NA	NA	NA	NA
22-1_par	chr7	73455774	12A2p6	cell line	sgMsh2	73455774	T	-	Deletion	Strelka2;Vardict	2	0.1497	147	0	0	NA	exonic	Chd2	frameshift deletion	Chd2:NM_001081345:exon29:c.3734delA:p.K1245Sfs*3	7qD1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.652878446	NA	NA	CTT	frameshift	"CACT, T"	"8, 9"	"CACTCACT, TTTTTTTTT"	-1
22-1_par	chr7	79915214	12A2p6	cell line	sgMsh2	79915214	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	121	0	0	NA	exonic	Ap3s2	nonsynonymous SNV	Ap3s2:NM_009682:exon3:c.C206A:p.A69D	7qD2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9998546	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	80382328	12A2p6	cell line	sgMsh2	80382328	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	77	0	0	NA	exonic	Fes	synonymous SNV	Fes:NM_010194:exon10:c.C1305T:p.F435F	7qD2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.7520926	GGA	synonymous	NA	NA	NA	NA
22-1_par	chr7	81476987	12A2p6	cell line	sgMsh2	81476987	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.231	13	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon8:c.C1014T:p.G338G	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.7614729	CGC	synonymous	NA	NA	NA	NA
22-1_par	chr7	84947393	12A2p6	cell line	sgMsh2	84947393	T	C	SNV	Mutect2;Vardict	2	0.026	252	0	0	NA	exonic	Vmn2r65	synonymous SNV	Vmn2r65:NM_001105180:exon2:c.A453G:p.L151L	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.113392382	3	4.98E-09	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr7	85558936	12A2p6	cell line	sgMsh2	85558936	A	G	SNV	Mutect2;MuSe;Vardict	3	0.063	475	0	0	NA	exonic	Vmn2r70	synonymous SNV	Vmn2r70:NM_001384914:exon6:c.T2323C:p.L775L	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.8674823	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr7	86166207	12A2p6	cell line	sgMsh2	86166207	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	158	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon2:c.A448T:p.S150C	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.6471773	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	86231137	12A2p6	cell line	sgMsh2	86231137	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	100	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon2:c.A340G:p.K114E	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.8966859	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	86412510	12A2p6	cell line	sgMsh2	86412510	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	714	0	0	NA	exonic	Olfr301	synonymous SNV	Olfr301:NM_212436:exon3:c.T147C:p.V49V	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	1	TTG	synonymous	NA	NA	NA	NA
22-1_par	chr7	86615821	12A2p6	cell line	sgMsh2	86615821	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	332	0	0	NA	exonic	Olfr294	synonymous SNV	Olfr294:NM_001011750:exon1:c.C823T:p.L275L	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.9394441	AGC	synonymous	NA	NA	NA	NA
22-1_par	chr7	87004063	12A2p6	cell line	sgMsh2	87004063	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	173	0	0	NA	exonic	Vmn2r79	nonsynonymous SNV	Vmn2r79:NM_001105190:exon5:c.T1535C:p.V512A	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.239868501	3	0.975048	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	88130831	12A2p6	cell line	sgMsh2	88130831	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	73	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon10:c.A3478C:p.I1160L,Grm5:NM_001143834:exon11:c.A3574C:p.I1192L"	7qD3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.331454655	2	9.66E-07	CAT	nonsynonymous	TCA	9	TCATCATCA	NA
22-1_par	chr7	92442639	12A2p6	cell line	sgMsh2	92442639	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	61	0	0	NA	exonic	Dlg2	nonsynonymous SNV	"Dlg2:NM_001243047:exon10:c.A842T:p.K281M,Dlg2:NM_001243046:exon14:c.A1283T:p.K428M,Dlg2:NM_011807:exon22:c.A2396T:p.K799M"	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	7.73E-06	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	92653224	12A2p6	cell line	sgMsh2	92653224	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	79	0	0	NA	exonic	Pcf11	nonsynonymous SNV	Pcf11:NM_029078:exon9:c.T3677C:p.V1226A	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.392512092	2	0.9693633	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	97535260	12A2p6	cell line	sgMsh2	97535260	C	-	Deletion	Mutect2;Vardict	2	0.043	223	0	0	NA	exonic	Ints4	frameshift deletion	"Ints4:NM_001358012:exon21:c.2544delC:p.Q850Rfs*15,Ints4:NM_027256:exon21:c.2571delC:p.Q859Rfs*15"	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	NA	NA	ACC	frameshift	C	5	CCCCC	-1
22-1_par	chr7	98097162	12A2p6	cell line	sgMsh2	98097162	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	208	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon7:c.G762T:p.E254D,Myo7a:NM_001256081:exon8:c.G795T:p.E265D,Myo7a:NM_001256082:exon8:c.G780T:p.E260D,Myo7a:NM_008663:exon8:c.G795T:p.E265D"	7qE1	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.418679565	2	0.9999953	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	101291557	12A2p6	cell line	sgMsh2	101291557	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	133	0	0	NA	exonic	Atg16l2	nonsynonymous SNV	Atg16l2:NM_001111111:exon14:c.G1414A:p.D472N	7qE2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9854653	TCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	102098503	12A2p6	cell line	sgMsh2	102098503	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	111	0	0	NA	exonic	Art5	nonsynonymous SNV	"Art5:NM_001291354:exon3:c.C68T:p.A23V,Art5:NM_007491:exon3:c.C68T:p.A23V"	7qE2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	2	0.9993946	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	102169423	12A2p6	cell line	sgMsh2	102169423	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	17	0	0	NA	exonic	Nup98	frameshift deletion	"Nup98:NM_001287164:exon12:c.1399delG:p.A467Pfs*18,Nup98:NM_001287165:exon12:c.1348delG:p.A450Pfs*19,Nup98:NM_001287166:exon12:c.1348delG:p.A450Pfs*19,Nup98:NM_001287167:exon12:c.1399delG:p.A467Pfs*19,Nup98:NM_022979:exon12:c.1399delG:p.A467Pfs*19"	7qE2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
22-1_par	chr7	102354529	12A2p6	cell line	sgMsh2	102354529	C	T	SNV	Mutect2;Vardict	2	0.027	139	0	0	NA	exonic	Stim1	synonymous SNV	"Stim1:NM_001374058:exon2:c.C168T:p.C56C,Stim1:NM_001374060:exon2:c.C168T:p.C56C,Stim1:NM_009287:exon2:c.C168T:p.C56C"	7qE2	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.117753628	3	0.9999752	GCC	synonymous	NA	NA	NA	NA
22-1_par	chr7	102426027	12A2p6	cell line	sgMsh2	102426027	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	141	0	0	NA	exonic	Stim1	nonsynonymous SNV	"Stim1:NM_001374058:exon8:c.T1024C:p.Y342H,Stim1:NM_001374060:exon8:c.T1024C:p.Y342H,Stim1:NM_009287:exon8:c.T1024C:p.Y342H"	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7883149	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	102954991	12A2p6	cell line	sgMsh2	102954991	A	-	Deletion	Mutect2;Vardict	2	0.1	128	0	0	NA	exonic	Olfr575	frameshift deletion	Olfr575:NM_147114:exon1:c.630delT:p.F210Lfs*5	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.436124547	NA	NA	CAA	frameshift	A	5	AAAAA	-1
22-1_par	chr7	103639491	12A2p6	cell line	sgMsh2	103639491	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	183	0	0	NA	exonic	Olfr622	synonymous SNV	Olfr622:NM_147083:exon1:c.A648G:p.A216A	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9998978	TTG	synonymous	NA	NA	NA	NA
22-1_par	chr7	103907259	12A2p6	cell line	sgMsh2	103907259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	518	0	0	NA	exonic	Olfr65	synonymous SNV	Olfr65:NM_013616:exon1:c.C819T:p.V273V	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.457930774	2	1	TCC	synonymous	NA	NA	NA	NA
22-1_par	chr7	104107025	12A2p6	cell line	sgMsh2	104107025	T	C	SNV	Mutect2;Strelka2	2	0.052	123	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.T745C:p.Y249H	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9693949	CTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	104107027	12A2p6	cell line	sgMsh2	104107027	T	A	SNV	Mutect2;Strelka2	2	0.052	123	0	0	NA	exonic	Olfr646	stopgain	Olfr646:NM_147056:exon1:c.T747A:p.Y249X	7qE3	chr7-8318141-104226241	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9693949	ATA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	104304245	12A2p6	cell line	sgMsh2	104304245	T	C	SNV	Mutect2;Vardict	2	0.038	198	0	0	NA	exonic	Trim12a	nonsynonymous SNV	"Trim12a:NM_001368753:exon3:c.A562G:p.S188G,Trim12a:NM_001368754:exon4:c.A658G:p.S220G,Trim12a:NM_023835:exon4:c.A658G:p.S220G"	7qE3	chr7-104226517-104336337	2	1	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.165727328	3	0.9999769	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	104336103	12A2p6	cell line	sgMsh2	104336103	T	G	SNV	Mutect2;Vardict	2	0.068	152	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon7:c.T944G:p.L315R	7qE3	chr7-104226517-104336337	2	1	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.6379068	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	104348212	12A2p6	cell line	sgMsh2	104348212	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	438	0	0	NA	exonic	Trim12c	nonsynonymous SNV	"Trim12c:NM_001146007:exon2:c.A136G:p.T46A,Trim12c:NM_175677:exon2:c.A136G:p.T46A"	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	2.24E-09	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	104859406	12A2p6	cell line	sgMsh2	104859406	T	C	SNV	Mutect2;MuSe;Vardict	3	0.086	395	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon2:c.T14C:p.L5P	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	2	0.9999999	CTT	nonsynonymous	TTCC	8	TTCCTTCC	NA
22-1_par	chr7	104881034	12A2p6	cell line	sgMsh2	104881034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	422	0	0	NA	exonic	Olfr665	nonsynonymous SNV	Olfr665:NM_146814:exon1:c.T326C:p.L109S	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.466653265	2	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	105682887	12A2p6	cell line	sgMsh2	105682887	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	179	0	0	NA	exonic	Dnhd1	nonsynonymous SNV	Dnhd1:NM_001370803:exon13:c.T2564G:p.F855C	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.248590992	3	0.9560904	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	108613210	12A2p6	cell line	sgMsh2	108613210	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	272	0	0	NA	exonic	Olfr506	nonsynonymous SNV	Olfr506:NM_001011871:exon1:c.A902G:p.K301R	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	3.71E-08	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	108825280	12A2p6	cell line	sgMsh2	108825280	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	387	0	0	NA	exonic	Olfr514	nonsynonymous SNV	Olfr514:NM_146726:exon1:c.T718C:p.C240R	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1.01E-09	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	108845098	12A2p6	cell line	sgMsh2	108845098	A	G	SNV	Mutect2;Vardict	2	0.06	136	0	0	NA	exonic	Olfr516	nonsynonymous SNV	Olfr516:NM_146725:exon1:c.T911C:p.L304S	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8398246	TAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	109526257	12A2p6	cell line	sgMsh2	109526257	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	148	0	0	NA	exonic	Denn2b	synonymous SNV	"Denn2b:NM_029811:exon16:c.C1761A:p.I587I,Denn2b:NM_001001326:exon17:c.C3012A:p.I1004I"	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	1.00E-09	AGA	synonymous	NA	NA	NA	NA
22-1_par	chr7	110081863	12A2p6	cell line	sgMsh2	110081863	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	144	0	0	NA	exonic	Zfp143	nonsynonymous SNV	"Zfp143:NM_001374618:exon10:c.A913C:p.T305P,Zfp143:NM_009281:exon10:c.A910C:p.T304P"	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.457930774	2	0.9999807	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	110852855	12A2p6	cell line	sgMsh2	110852855	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	126	0	0	NA	exonic	Lyve1	synonymous SNV	Lyve1:NM_053247:exon5:c.T744A:p.A248A	7qE3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7551715	CAG	synonymous	NA	NA	NA	NA
22-1_par	chr7	111599057	12A2p6	cell line	sgMsh2	111599057	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	125	0	0	NA	exonic	Galnt18	nonsynonymous SNV	"Galnt18:NM_001360903:exon3:c.G495T:p.E165D,Galnt18:NM_173739:exon3:c.G495T:p.E165D"	7qF1	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7452991	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	116342208	12A2p6	cell line	sgMsh2	116342208	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	129	0	0	NA	exonic	Pik3c2a	nonsynonymous SNV	Pik3c2a:NM_011083:exon32:c.T4822G:p.S1608A	7qF1	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7490315	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	118145781	12A2p6	cell line	sgMsh2	118145781	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	82	0	0	NA	exonic	Smg1	nonsynonymous SNV	Smg1:NM_001031814:exon54:c.T9147G:p.D3049E	7qF1	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.7094277	GAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	119528595	12A2p6	cell line	sgMsh2	119528595	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	82	0	0	NA	exonic	Acsm5	nonsynonymous SNV	Acsm5:NM_178758:exon2:c.A158C:p.N53T	7qF2	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.449208283	2	0.9965156	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	125872837	12A2p6	cell line	sgMsh2	125872837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	177	0	0	NA	exonic	D430042O09Rik	nonsynonymous SNV	"D430042O09Rik:NM_001358287:exon25:c.G4597A:p.A1533T,D430042O09Rik:NM_001081022:exon26:c.G4675A:p.A1559T"	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.484098247	2	0.9999996	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	126870332	12A2p6	cell line	sgMsh2	126870332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	37	0	0	NA	exonic	Taok2	nonsynonymous SNV	Taok2:NM_001163775:exon16:c.A3323G:p.Q1108R	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	0.9982636	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	126996304	12A2p6	cell line	sgMsh2	126996304	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	154	0	0	NA	exonic	Mvp	synonymous SNV	Mvp:NM_080638:exon6:c.T633C:p.G211G	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.235507255	3	0.9737252	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr7	126996331	12A2p6	cell line	sgMsh2	126996331	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	100	0	0	NA	exonic	Mvp	synonymous SNV	Mvp:NM_080638:exon6:c.T606C:p.G202G	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5429996	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr7	127235565	12A2p6	cell line	sgMsh2	127235565	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	62	0	0	NA	exonic	Zfp553	nonsynonymous SNV	"Zfp553:NM_001360912:exon2:c.T291G:p.D97E,Zfp553:NM_146201:exon2:c.T291G:p.D97E"	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.9389148	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	127328693	12A2p6	cell line	sgMsh2	127328693	T	C	SNV	Mutect2;Strelka2	2	0.059	118	0	0	NA	exonic	Itgal	nonsynonymous SNV	"Itgal:NM_001253872:exon28:c.T3062C:p.V1021A,Itgal:NM_001253873:exon28:c.T3059C:p.V1020A,Itgal:NM_001253874:exon28:c.T3059C:p.V1020A,Itgal:NM_008400:exon28:c.T3056C:p.V1019A"	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.8490872	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	127328695	12A2p6	cell line	sgMsh2	127328695	T	C	SNV	Mutect2;Strelka2	2	0.059	118	0	0	NA	exonic	Itgal	nonsynonymous SNV	"Itgal:NM_001253872:exon28:c.T3064C:p.F1022L,Itgal:NM_001253873:exon28:c.T3061C:p.F1021L,Itgal:NM_001253874:exon28:c.T3061C:p.F1021L,Itgal:NM_008400:exon28:c.T3058C:p.F1020L"	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.8490872	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	127386541	12A2p6	cell line	sgMsh2	127386541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	318	0	0	NA	exonic	9130019O22Rik	nonsynonymous SNV	9130019O22Rik:NM_030226:exon2:c.T277C:p.C93R	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.266035973	3	0.9337236	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	133656556	12A2p6	cell line	sgMsh2	133656556	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	157	0	0	NA	exonic	Edrf1	nonsynonymous SNV	Edrf1:NM_178115:exon16:c.A2046C:p.Q682H	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.42304081	2	0.9999216	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	133716924	12A2p6	cell line	sgMsh2	133716924	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	216	0	0	NA	exonic	Bccip	nonsynonymous SNV	Bccip:NM_025392:exon4:c.A391C:p.S131R	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9999254	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	135113863	12A2p6	cell line	sgMsh2	135113863	A	G	SNV	Mutect2;Vardict	2	0.028	174	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon36:c.A3628G:p.I1210V	7qF3	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.122114873	3	0.9999973	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	140007474	12A2p6	cell line	sgMsh2	140007474	A	C	SNV	Mutect2;Vardict	2	0.063	79	0	0	NA	exonic	Tubgcp2	nonsynonymous SNV	"Tubgcp2:NM_001286011:exon6:c.T92G:p.F31C,Tubgcp2:NM_001286007:exon7:c.T977G:p.F326C,Tubgcp2:NM_001286009:exon7:c.T977G:p.F326C,Tubgcp2:NM_133755:exon7:c.T977G:p.F326C"	7qF4	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.274758464	3	0.6666048	GAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	140466564	12A2p6	cell line	sgMsh2	140466564	G	A	SNV	Mutect2;MuSe;Vardict	3	0.144	155	0	0	NA	exonic	Olfr533	nonsynonymous SNV	Olfr533:NM_001011815:exon1:c.G362A:p.R121H	7qF4	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.628019347	2	0.7194564	CGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr7	140889405	12A2p6	cell line	sgMsh2	140889405	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	108	0	0	NA	exonic	Psmd13	nonsynonymous SNV	Psmd13:NM_011875:exon7:c.T497G:p.I166S	7qF5	chr7-104336338-145323643	3	2	1	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.86173	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	13295029	12A2p6	cell line	sgMsh2	13295029	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	224	0	0	NA	exonic	Tmco3	nonsynonymous SNV	"Tmco3:NM_001364217:exon4:c.T808G:p.F270V,Tmco3:NM_172282:exon4:c.T808G:p.F270V"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.549516929	2	0.9999755	CTT	nonsynonymous	ACC	8	ACCACCAC	NA
22-1_par	chr8	13416028	12A2p6	cell line	sgMsh2	13416028	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	136	0	0	NA	exonic	Grk1	nonsynonymous SNV	Grk1:NM_011881:exon7:c.T1471G:p.S491A	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.7776449	TTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	13838081	12A2p6	cell line	sgMsh2	13838081	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	157	0	0	NA	exonic	AF366264	nonsynonymous SNV	AF366264:NM_153093:exon1:c.A9C:p.Q3H	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.667270556	1	0.9284519	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	22027587	12A2p6	cell line	sgMsh2	22027587	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	320	0	0	NA	exonic	Atp7b	synonymous SNV	Atp7b:NM_007511:exon2:c.T1234C:p.L412L	8qA2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.170088573	3	0.9999999	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr8	22243388	12A2p6	cell line	sgMsh2	22243388	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	80	0	0	NA	exonic	Thsd1	synonymous SNV	"Thsd1:NM_001205253:exon2:c.T267C:p.F89F,Thsd1:NM_001293688:exon3:c.T450C:p.F150F,Thsd1:NM_019576:exon3:c.T450C:p.F150F"	8qA2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.9605684	TTA	synonymous	T	5	TTTTT	NA
22-1_par	chr8	23234837	12A2p6	cell line	sgMsh2	23234837	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	240	0	0	NA	exonic	Gins4	nonsynonymous SNV	Gins4:NM_024240:exon3:c.T100C:p.W34R	8qA2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.18317231	3	0.9999829	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	24593118	12A2p6	cell line	sgMsh2	24593118	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	429	0	0	NA	exonic	Ido1	nonsynonymous SNV	"Ido1:NM_001293690:exon3:c.A17G:p.N6S,Ido1:NM_008324:exon3:c.A290G:p.N97S"	8qA2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.213701028	3	0.9999985	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	26044258	12A2p6	cell line	sgMsh2	26044258	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	68	0	0	NA	exonic	Hook3	nonsynonymous SNV	Hook3:NM_207659:exon17:c.A1637C:p.K546T	8qA2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.344538392	2	0.8108637	CTT	nonsynonymous	T	5	TTTTT	NA
22-1_par	chr8	31236033	12A2p6	cell line	sgMsh2	31236033	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	173	0	0	NA	exonic	Fut10	nonsynonymous SNV	"Fut10:NM_001012517:exon4:c.C815T:p.A272V,Fut10:NM_001286424:exon4:c.C815T:p.A272V,Fut10:NM_134161:exon4:c.C815T:p.A272V,Fut10:NM_001286422:exon5:c.C815T:p.A272V"	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.196256046	3	0.9991154	GCC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	31236064	12A2p6	cell line	sgMsh2	31236064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	177	0	0	NA	exonic	Fut10	synonymous SNV	"Fut10:NM_001012517:exon4:c.T846C:p.N282N,Fut10:NM_001286424:exon4:c.T846C:p.N282N,Fut10:NM_134161:exon4:c.T846C:p.N282N,Fut10:NM_001286422:exon5:c.T846C:p.N282N"	8qA3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.479737001	2	0.9999996	ATG	synonymous	NA	NA	NA	NA
22-1_par	chr8	43521225	12A2p6	cell line	sgMsh2	43521225	T	A	SNV	Mutect2;Vardict	2	0.04	194	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A739T:p.I247L	8qA4	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9999395	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	43651023	12A2p6	cell line	sgMsh2	43651023	T	C	SNV	Mutect2;Vardict	2	0.031	659	0	0	NA	exonic	Adam34	synonymous SNV	Adam34:NM_145745:exon2:c.A1584G:p.E528E	8qA4	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	1	TTT	synonymous	NA	NA	NA	NA
22-1_par	chr8	44951107	12A2p6	cell line	sgMsh2	44951107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	120	0	0	NA	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon1:c.C894T:p.G298G	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.636741838	2	6.46E-09	GCG	synonymous	TGGC	8	TGGCTGGC	NA
22-1_par	chr8	45348574	12A2p6	cell line	sgMsh2	45348574	T	-	Deletion	Strelka2;Vardict	2	0.0432	139	0	0	NA	exonic	Fam149a	frameshift deletion	Fam149a:NM_153535:exon8:c.1509delA:p.K503Nfs*1	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.188405804	NA	NA	GTT	frameshift	T	5	TTTTT	-1
22-1_par	chr8	45795780	12A2p6	cell line	sgMsh2	45795780	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	75	0	0	NA	exonic	Sorbs2	synonymous SNV	"Sorbs2:NM_172752:exon15:c.C2010T:p.T670T,Sorbs2:NM_001205219:exon16:c.C2067T:p.T689T"	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.409957074	2	0.9789338	CCC	synonymous	NA	NA	NA	NA
22-1_par	chr8	45970464	12A2p6	cell line	sgMsh2	45970464	A	-	Deletion	Strelka2;Vardict	2	0.0811	111	0	0	NA	exonic	1700029J07Rik	frameshift deletion	"1700029J07Rik:NM_001033148:exon2:c.210delT:p.F70Lfs*6,1700029J07Rik:NM_001359113:exon3:c.210delT:p.F70Lfs*6"	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.353697007	NA	NA	CAA	frameshift	A	5	AAAAA	-1
22-1_par	chr8	48138825	12A2p6	cell line	sgMsh2	48138825	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	192	0	0	NA	exonic	Dctd	synonymous SNV	"Dctd:NM_001161515:exon5:c.C423T:p.S141S,Dctd:NM_001161516:exon5:c.C423T:p.S141S,Dctd:NM_178788:exon5:c.C423T:p.S141S"	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9897356	GCG	synonymous	NA	NA	NA	NA
22-1_par	chr8	48228665	12A2p6	cell line	sgMsh2	48228665	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	18	0	0	NA	exonic	Tenm3	synonymous SNV	"Tenm3:NM_001145937:exon27:c.C7881T:p.R2627R,Tenm3:NM_011857:exon29:c.C7929T:p.R2643R"	8qB1.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	1	0.09428243	CGC	synonymous	GC	8	GCGCGCGC	NA
22-1_par	chr8	48342616	12A2p6	cell line	sgMsh2	48342616	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	190	0	0	NA	exonic	Tenm3	synonymous SNV	"Tenm3:NM_001145937:exon8:c.A1638G:p.R546R,Tenm3:NM_011857:exon8:c.A1638G:p.R546R"	8qB1.2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.6946457	CTC	synonymous	NA	NA	NA	NA
22-1_par	chr8	54639495	12A2p6	cell line	sgMsh2	54639495	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	234	0	0	NA	exonic	Wdr17	nonsynonymous SNV	"Wdr17:NM_001372376:exon21:c.A2191G:p.S731G,Wdr17:NM_001372374:exon22:c.A2740G:p.S914G,Wdr17:NM_001372375:exon23:c.A2479G:p.S827G,Wdr17:NM_001364215:exon24:c.A3031G:p.S1011G,Wdr17:NM_001372373:exon25:c.A3253G:p.S1085G,Wdr17:NM_001172152:exon26:c.A3274G:p.S1092G,Wdr17:NM_001372370:exon26:c.A3325G:p.S1109G,Wdr17:NM_001372371:exon26:c.A3325G:p.S1109G,Wdr17:NM_001372372:exon26:c.A3325G:p.S1109G,Wdr17:NM_028220:exon27:c.A3295G:p.S1099G"	8qB1.3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9986645	CTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	57485063	12A2p6	cell line	sgMsh2	57485063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	167	0	0	NA	exonic	Sap30	synonymous SNV	Sap30:NM_021788:exon3:c.A519G:p.L173L	8qB2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.9998471	TTA	synonymous	TTTA	8	TTTATTTA	NA
22-1_par	chr8	61940705	12A2p6	cell line	sgMsh2	61940705	A	G	SNV	Mutect2;Vardict	2	0.033	202	0	0	NA	exonic	Ddx60	synonymous SNV	Ddx60:NM_001293783:exon4:c.A174G:p.G58G	8qB3.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.1439211	3	0.9999974	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr8	61969606	12A2p6	cell line	sgMsh2	61969606	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	102	0	0	NA	exonic	Ddx60	nonsynonymous SNV	Ddx60:NM_001293783:exon14:c.T1873C:p.F625L	8qB3.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.287842201	3	0.5415905	GTT	nonsynonymous	T	5	TTTTT	NA
22-1_par	chr8	63143929	12A2p6	cell line	sgMsh2	63143929	A	G	SNV	Mutect2;Strelka2	2	0.05	117	0	0	NA	exonic	Spock3	nonsynonymous SNV	"Spock3:NM_001252621:exon4:c.A266G:p.K89R,Spock3:NM_001361918:exon4:c.A266G:p.K89R,Spock3:NM_001252620:exon5:c.A275G:p.K92R,Spock3:NM_023689:exon5:c.A275G:p.K92R"	8qB3.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9773394	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	64205281	12A2p6	cell line	sgMsh2	64205281	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	83	0	0	NA	exonic	Tll1	nonsynonymous SNV	Tll1:NM_009390:exon1:c.T103A:p.Y35N	8qB3.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7039625	TAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	66680751	12A2p6	cell line	sgMsh2	66680751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	137	0	0	NA	exonic	Npy5r	synonymous SNV	"Npy5r:NM_001358957:exon2:c.A1389G:p.L463L,Npy5r:NM_001358958:exon2:c.A1389G:p.L463L,Npy5r:NM_016708:exon2:c.A1389G:p.L463L"	8qB3.1	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.540794438	2	0.9995901	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr8	69744534	12A2p6	cell line	sgMsh2	69744534	A	C	SNV	Mutect2;Vardict	2	0.058	134	0	0	NA	exonic	Zfp963	synonymous SNV	Zfp963:NM_001200023:exon2:c.T57G:p.A19A	8qB3.3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.8966351	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr8	70112833	12A2p6	cell line	sgMsh2	70112833	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	73	0	0	NA	exonic	Ncan	synonymous SNV	Ncan:NM_007789:exon4:c.T540A:p.A180A	8qB3.3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.414318319	2	0.9794775	AAG	synonymous	NA	NA	NA	NA
22-1_par	chr8	71651163	12A2p6	cell line	sgMsh2	71651163	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	129	0	0	NA	exonic	Unc13a	nonsynonymous SNV	Unc13a:NM_001029873:exon20:c.C2624A:p.A875D	8qB3.3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.7490315	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	72200710	12A2p6	cell line	sgMsh2	72200710	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.25	18	0	0	NA	exonic	Hsh2d	nonsynonymous SNV	Hsh2d:NM_197944:exon6:c.A935C:p.D312A	8qB3.3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	1	1	0.09428243	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	80613487	12A2p6	cell line	sgMsh2	80613487	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	182	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.G2408A:p.G803D	8qC2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	2	0.9999961	GGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	80613515	12A2p6	cell line	sgMsh2	80613515	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	194	0	0	NA	exonic	Frem3	synonymous SNV	Frem3:NM_001167898:exon1:c.A2436G:p.V812V	8qC2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9998126	TAT	synonymous	NA	NA	NA	NA
22-1_par	chr8	80726331	12A2p6	cell line	sgMsh2	80726331	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.093	56	0	0	NA	exonic	Smarca5	synonymous SNV	Smarca5:NM_053124:exon7:c.G834A:p.E278E	8qC2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.405595828	2	0.933372	ACT	synonymous	NA	NA	NA	NA
22-1_par	chr8	84212067	12A2p6	cell line	sgMsh2	84212067	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	116	0	0	NA	exonic	Zswim4	nonsynonymous SNV	Zswim4:NM_172503:exon14:c.G3185A:p.R1062Q	8qC2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.348899637	2	0.9539463	TCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	84515025	12A2p6	cell line	sgMsh2	84515025	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	208	0	0	NA	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon3:c.G467A:p.R156Q,Cacna1a:NM_001252060:exon4:c.G608A:p.R203Q,Cacna1a:NM_001252061:exon4:c.G608A:p.R203Q,Cacna1a:NM_007578:exon4:c.G608A:p.R203Q"	8qC2	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.396873337	2	0.9999645	CGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	85642434	12A2p6	cell line	sgMsh2	85642434	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	556	0	0	NA	exonic	Neto2	nonsynonymous SNV	"Neto2:NM_001081324:exon8:c.T1060G:p.W354G,Neto2:NM_001357287:exon8:c.T955G:p.W319G,Neto2:NM_001357288:exon8:c.T976G:p.W326G"	8qC3	chr8-21555893-88741726	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.130837364	3	1	CAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	93331260	12A2p6	cell line	sgMsh2	93331260	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	268	0	0	NA	exonic	Ces1g	nonsynonymous SNV	Ces1g:NM_021456:exon4:c.T412C:p.W138R	8qC5	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.218062273	3	0.9996757	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	94851926	12A2p6	cell line	sgMsh2	94851926	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	139	0	0	NA	exonic	Coq9	nonsynonymous SNV	Coq9:NM_026452:exon6:c.T667C:p.W223R	8qC5	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.983951	GTG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	104527109	12A2p6	cell line	sgMsh2	104527109	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	208	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon6:c.T375C:p.I125I	8qD3	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.8151261	CAA	synonymous	NA	NA	NA	NA
22-1_par	chr8	105827794	12A2p6	cell line	sgMsh2	105827794	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	110	0	0	NA	exonic	Tsnaxip1	nonsynonymous SNV	Tsnaxip1:NM_024445:exon1:c.A8T:p.N3I	8qD3	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.283480955	3	0.5885395	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	109996106	12A2p6	cell line	sgMsh2	109996106	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	145	0	0	NA	exonic	Tat	nonsynonymous SNV	Tat:NM_146214:exon8:c.A799G:p.S267G	8qD3	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8502265	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	111720954	12A2p6	cell line	sgMsh2	111720954	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	71	0	0	NA	exonic	Bcar1	synonymous SNV	"Bcar1:NM_001198839:exon2:c.T390C:p.G130G,Bcar1:NM_009954:exon2:c.T390C:p.G130G"	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.335815901	2	0.7796934	GAC	synonymous	NA	NA	NA	NA
22-1_par	chr8	113642034	12A2p6	cell line	sgMsh2	113642034	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	96	0	0	NA	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon5:c.G1566T:p.E522D,Mon1b:NM_001048143:exon6:c.G1566T:p.E522D"	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.444847038	2	0.9985383	AGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	113743067	12A2p6	cell line	sgMsh2	113743067	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	270	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon13:c.T2002C:p.Y668H	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.427402056	2	3.81E-08	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	117054944	12A2p6	cell line	sgMsh2	117054944	A	G	SNV	Mutect2;Vardict	2	0.034	141	0	0	NA	exonic	Pkd1l2	synonymous SNV	Pkd1l2:NM_029686:exon14:c.T2361C:p.G787G	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.148282346	3	0.9998537	AAC	synonymous	NA	NA	NA	NA
22-1_par	chr8	117068214	12A2p6	cell line	sgMsh2	117068214	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	97	0	0	NA	exonic	Pkd1l2	nonsynonymous SNV	Pkd1l2:NM_029686:exon6:c.A1005C:p.Q335H	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.8200339	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	117097591	12A2p6	cell line	sgMsh2	117097591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	100	0	0	NA	exonic	Bco1	synonymous SNV	"Bco1:NM_001163028:exon2:c.G96A:p.L32L,Bco1:NM_021486:exon2:c.G96A:p.L32L"	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.5539068	TGC	synonymous	NA	NA	NA	NA
22-1_par	chr8	119772470	12A2p6	cell line	sgMsh2	119772470	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	196	0	0	NA	exonic	Meak7	synonymous SNV	Meak7:NM_028883:exon3:c.C282T:p.S94S	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.379428356	2	0.9996976	GGG	synonymous	NA	NA	NA	NA
22-1_par	chr8	122427674	12A2p6	cell line	sgMsh2	122427674	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	265	0	0	NA	exonic	Cyba	nonsynonymous SNV	"Cyba:NM_001301284:exon2:c.T109C:p.Y37H,Cyba:NM_007806:exon2:c.T109C:p.Y37H"	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9922855	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	123157567	12A2p6	cell line	sgMsh2	123157567	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	222	0	0	NA	exonic	Sult5a1	nonsynonymous SNV	Sult5a1:NM_020564:exon2:c.T14G:p.M5R	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.178811064	3	0.9999755	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr8	123270276	12A2p6	cell line	sgMsh2	123270276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	102	0	0	NA	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon38:c.T3760C:p.F1254L	8qE1	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.209339782	3	0.976724	AAG	nonsynonymous	AAG	10	AAGAAGAAGA	NA
22-1_par	chr8	124029172	12A2p6	cell line	sgMsh2	124029172	A	T	SNV	Mutect2;Vardict	2	0.032	199	0	0	NA	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon4:c.A1617T:p.A539A,Urb2:NM_001368414:exon4:c.A1617T:p.A539A"	8qE2	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.139559855	3	0.9999978	CAA	synonymous	NA	NA	NA	NA
22-1_par	chr8	125891828	12A2p6	cell line	sgMsh2	125891828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	42	0	0	NA	exonic	Pcnx2	nonsynonymous SNV	Pcnx2:NM_175561:exon2:c.A358G:p.S120G	8qE2	chr8-92827332-128726472	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.990002721	1	0.9992487	CTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	8643623	12A2p6	cell line	sgMsh2	8643623	C	T	SNV	Mutect2;Vardict	2	0.044	106	0	0	NA	exonic	Trpc6	nonsynonymous SNV	"Trpc6:NM_001282086:exon5:c.C1408T:p.L470F,Trpc6:NM_013838:exon5:c.C1408T:p.L470F"	9qA1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9908959	CCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	15353002	12A2p6	cell line	sgMsh2	15353002	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	80	0	0	NA	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon3:c.C347A:p.A116E	9qA2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.601851874	2	0.9209268	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	19566844	12A2p6	cell line	sgMsh2	19566844	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	288	0	0	NA	exonic	Olfr854	nonsynonymous SNV	Olfr854:NM_146522:exon1:c.T539A:p.F180Y	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.318370919	2	0.986363	GAA	nonsynonymous	AGA	8	AGAAGAAG	NA
22-1_par	chr9	20914012	12A2p6	cell line	sgMsh2	20914012	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	129	0	0	NA	exonic	Dnmt1	nonsynonymous SNV	"Dnmt1:NM_001199431:exon29:c.C3155T:p.A1052V,Dnmt1:NM_001199432:exon29:c.C2798T:p.A933V,Dnmt1:NM_001199433:exon29:c.C2801T:p.A934V,Dnmt1:NM_001314011:exon29:c.C3176T:p.A1059V,Dnmt1:NM_010066:exon29:c.C3152T:p.A1051V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.8313359	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	21399994	12A2p6	cell line	sgMsh2	21399994	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	293	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon17:c.T2043A:p.N681K,Ilf3:NM_001042709:exon17:c.T2043A:p.N681K,Ilf3:NM_001042708:exon18:c.T2082A:p.N694K,Ilf3:NM_001277321:exon18:c.T2082A:p.N694K,Ilf3:NM_010561:exon18:c.T2082A:p.N694K,Ilf3:NM_001277322:exon19:c.T2082A:p.N694K"	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	3	0.9991168	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	21404069	12A2p6	cell line	sgMsh2	21404069	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	213	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon19:c.G2438T:p.G813V,Ilf3:NM_001277321:exon20:c.G2477T:p.G826V,Ilf3:NM_010561:exon20:c.G2477T:p.G826V,Ilf3:NM_001277322:exon21:c.G2477T:p.G826V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.135198609	3	0.9999994	GGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	21404093	12A2p6	cell line	sgMsh2	21404093	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	207	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon19:c.A2462G:p.N821S,Ilf3:NM_001277321:exon20:c.A2501G:p.N834S,Ilf3:NM_010561:exon20:c.A2501G:p.N834S,Ilf3:NM_001277322:exon21:c.A2501G:p.N834S"	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	0.9998912	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	21780689	12A2p6	cell line	sgMsh2	21780689	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.13	42	0	0	NA	exonic	Kank2	nonsynonymous SNV	Kank2:NM_145611:exon4:c.A1279T:p.N427Y	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.566961911	2	0.9405215	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	22358730	12A2p6	cell line	sgMsh2	22358730	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	173	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon13:c.A2167C:p.N723H	9qA3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.174449819	3	0.9998353	TTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	26882406	12A2p6	cell line	sgMsh2	26882406	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	96	0	0	NA	exonic	Gm1110	nonsynonymous SNV	Gm1110:NM_001281475:exon17:c.A1525G:p.T509A	9qA4	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.270397219	3	0.717167	GTT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	35566717	12A2p6	cell line	sgMsh2	35566717	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	152	0	0	NA	exonic	Pus3	nonsynonymous SNV	Pus3:NM_023292:exon5:c.T1244G:p.L415R	9qA4	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	2	0.999967	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	37992939	12A2p6	cell line	sgMsh2	37992939	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	593	0	0	NA	exonic	Olfr881	nonsynonymous SNV	Olfr881:NM_146418:exon1:c.C446T:p.T149I	9qA4	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9999997	ACA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	38368377	12A2p6	cell line	sgMsh2	38368377	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	115	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.C830T:p.S277F,Olfr250:NM_207552:exon1:c.C830T:p.S277F"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.501543229	2	0.9998947	TCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	38449298	12A2p6	cell line	sgMsh2	38449298	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	402	0	0	NA	exonic	Olfr902	nonsynonymous SNV	Olfr902:NM_146802:exon1:c.T425C:p.L142S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.109031137	3	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	39019334	12A2p6	cell line	sgMsh2	39019334	A	G	SNV	Mutect2;Vardict	2	0.02	498	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.T206C:p.I69T	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.087224909	3	1	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	39484869	12A2p6	cell line	sgMsh2	39484869	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	491	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.C383A:p.A128D	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.296564692	2	0.9451561	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	39596660	12A2p6	cell line	sgMsh2	39596660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	116	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon11:c.T1179C:p.T393T,AW551984:NM_001359951:exon11:c.T1179C:p.T393T,AW551984:NM_178737:exon11:c.T1179C:p.T393T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.440485792	2	0.9995755	CAG	synonymous	NA	NA	NA	NA
22-1_par	chr9	39614089	12A2p6	cell line	sgMsh2	39614089	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	253	0	0	NA	exonic	Olfr148	nonsynonymous SNV	Olfr148:NM_146505:exon1:c.A521G:p.Y174C	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9986756	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	39795757	12A2p6	cell line	sgMsh2	39795757	T	C	SNV	Mutect2;Vardict	2	0.012	743	0	0	NA	exonic	Olfr969	synonymous SNV	Olfr969:NM_146826:exon1:c.T381C:p.G127G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.052334946	3	1	GTA	synonymous	NA	NA	NA	NA
22-1_par	chr9	39950294	12A2p6	cell line	sgMsh2	39950294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	160	0	0	NA	exonic	Olfr975	nonsynonymous SNV	Olfr975:NM_146828:exon1:c.T476C:p.F159S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9765979	AAA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	40074483	12A2p6	cell line	sgMsh2	40074483	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	202	0	0	NA	exonic	Olfr982	nonsynonymous SNV	Olfr982:NM_146854:exon1:c.A187G:p.M63V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.226784764	3	0.9954217	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	42330278	12A2p6	cell line	sgMsh2	42330278	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	228	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon24:c.A6400T:p.M2134L,Tecta:NM_009347:exon24:c.A6415T:p.M2139L,Tecta:NM_001378602:exon25:c.A6415T:p.M2139L"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9662945	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	43222692	12A2p6	cell line	sgMsh2	43222692	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	100	0	0	NA	exonic	Oaf	nonsynonymous SNV	Oaf:NM_178644:exon4:c.G731A:p.C244Y	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.418679565	2	0.9965308	GCA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	44514177	12A2p6	cell line	sgMsh2	44514177	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	173	0	0	NA	exonic	Cxcr5	nonsynonymous SNV	Cxcr5:NM_007551:exon2:c.G182A:p.S61N	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.597490629	2	0.9793667	GCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	45043767	12A2p6	cell line	sgMsh2	45043767	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	123	0	0	NA	exonic	Mpzl2	nonsynonymous SNV	"Mpzl2:NM_001357727:exon2:c.T126G:p.D42E,Mpzl2:NM_007962:exon2:c.T126G:p.D42E"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9757473	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	45043774	12A2p6	cell line	sgMsh2	45043774	T	-	Deletion	Mutect2;Vardict	2	0.06	129	0	0	NA	exonic	Mpzl2	stopgain	"Mpzl2:NM_001357727:exon2:c.133delT:p.L45fs*0,Mpzl2:NM_007962:exon2:c.133delT:p.L45fs*0"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	NA	NA	GTT	nonsynonymous	NA	NA	NA	-1
22-1_par	chr9	46291757	12A2p6	cell line	sgMsh2	46291757	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	107	0	0	NA	exonic	Bud13	synonymous SNV	Bud13:NM_146000:exon7:c.C1477T:p.L493L	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.449208283	2	0.9994657	GCT	synonymous	NA	NA	NA	NA
22-1_par	chr9	50770220	12A2p6	cell line	sgMsh2	50770220	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	128	0	0	NA	exonic	Fdxacb1	nonsynonymous SNV	Fdxacb1:NM_198675:exon3:c.T440C:p.V147A	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.244229746	3	0.9296851	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	50771892	12A2p6	cell line	sgMsh2	50771892	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	193	0	0	NA	exonic	Fdxacb1	nonsynonymous SNV	Fdxacb1:NM_198675:exon5:c.T1154C:p.M385T	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.191894801	3	0.9997155	ATG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	54891129	12A2p6	cell line	sgMsh2	54891129	T	-	Deletion	Mutect2;Vardict	2	0.053	291	0	0	NA	exonic	Ireb2	frameshift deletion	Ireb2:NM_022655:exon9:c.1153delT:p.F386Sfs*5	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.23114601	NA	NA	CTT	frameshift	T	5	TTTTT	-1
22-1_par	chr9	55035314	12A2p6	cell line	sgMsh2	55035314	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	291	0	0	NA	exonic	Chrnb4	synonymous SNV	Chrnb4:NM_148944:exon5:c.C675T:p.F225F	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9845868	TGA	synonymous	TGA	9	TGATGATGA	NA
22-1_par	chr9	55859841	12A2p6	cell line	sgMsh2	55859841	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	91	0	0	NA	exonic	Scaper	synonymous SNV	"Scaper:NM_001081341:exon12:c.T1323C:p.S441S,Scaper:NM_001357652:exon12:c.T1305C:p.S435S"	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.309648428	2	0.665246	CAC	synonymous	NA	NA	NA	NA
22-1_par	chr9	61924802	12A2p6	cell line	sgMsh2	61924802	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	86	0	0	NA	exonic	Kif23	nonsynonymous SNV	Kif23:NM_024245:exon17:c.G1900T:p.V634L	9qB	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.514626965	2	0.9986519	ACC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	70476067	12A2p6	cell line	sgMsh2	70476067	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	142	0	0	NA	exonic	Rnf111	nonsynonymous SNV	"Rnf111:NM_001374753:exon2:c.T583G:p.L195V,Rnf111:NM_001357494:exon3:c.T583G:p.L195V,Rnf111:NM_033604:exon3:c.T583G:p.L195V"	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.9192213	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	70718761	12A2p6	cell line	sgMsh2	70718761	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	105	0	0	NA	exonic	Adam10	nonsynonymous SNV	Adam10:NM_007399:exon3:c.A310G:p.T104A	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.37506711	2	0.9806427	CAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	74276022	12A2p6	cell line	sgMsh2	74276022	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	147	0	0	NA	exonic	Wdr72	nonsynonymous SNV	Wdr72:NM_001033500:exon19:c.G3271A:p.E1091K	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.340177146	2	0.9674226	GGA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	75161477	12A2p6	cell line	sgMsh2	75161477	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.022	480	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon16:c.A1960G:p.T654A	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.0959474	3	1	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	75211127	12A2p6	cell line	sgMsh2	75211127	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	395	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon37:c.A4829G:p.Q1610R	9qD	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.187533555	3	4.24E-08	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	92606786	12A2p6	cell line	sgMsh2	92606786	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	154	0	0	NA	exonic	Plod2	nonsynonymous SNV	"Plod2:NM_011961:exon18:c.T1955C:p.V652A,Plod2:NM_001142916:exon19:c.T2018C:p.V673A"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.252952237	3	0.9179436	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	99875639	12A2p6	cell line	sgMsh2	99875639	T	C	SNV	Mutect2;Vardict	2	0.136	26	0	0	NA	exonic	Sox14	nonsynonymous SNV	Sox14:NM_011440:exon1:c.A46G:p.M16V	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.593129383	2	0.8505823	ATG	nonsynonymous	ACCAT	10	ACCATACCAT	NA
22-1_par	chr9	103484752	12A2p6	cell line	sgMsh2	103484752	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	90	0	0	NA	exonic	Tmem108	nonsynonymous SNV	"Tmem108:NM_001359465:exon5:c.A1634T:p.N545I,Tmem108:NM_178638:exon6:c.A1634T:p.N545I"	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.261674728	3	0.7774415	ATT	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	104018216	12A2p6	cell line	sgMsh2	104018216	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	88	0	0	NA	exonic	Nphp3	nonsynonymous SNV	Nphp3:NM_028721:exon9:c.A1452T:p.Q484H	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.257313482	3	0.8028614	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	106835549	12A2p6	cell line	sgMsh2	106835549	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	114	0	0	NA	exonic	Dcaf1	frameshift deletion	"Dcaf1:NM_001015507:exon5:c.295delC:p.P100fs*0,Dcaf1:NM_001373930:exon5:c.295delC:p.P100Lfs*1,Dcaf1:NM_001373931:exon5:c.295delC:p.P100Lfs*1"	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.619296856	NA	NA	GCC	frameshift	C	5	CCCCC	-1
22-1_par	chr9	107534908	12A2p6	cell line	sgMsh2	107534908	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	90	0	0	NA	exonic	Tmem115	nonsynonymous SNV	Tmem115:NM_019704:exon1:c.G430T:p.G144C	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.32709341	2	0.798059	TGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	107684724	12A2p6	cell line	sgMsh2	107684724	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	156	0	0	NA	exonic	Sema3f	synonymous SNV	"Sema3f:NM_001311151:exon13:c.G1509T:p.V503V,Sema3f:NM_001379496:exon13:c.G1416T:p.V472V,Sema3f:NM_011349:exon13:c.G1416T:p.V472V"	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.536433192	2	0.9998818	CCA	synonymous	NA	NA	NA	NA
22-1_par	chr9	107995915	12A2p6	cell line	sgMsh2	107995915	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	138	0	0	NA	exonic	Cdhr4	nonsynonymous SNV	Cdhr4:NM_001378391:exon9:c.T1061C:p.L354P	9qF1	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.222423519	3	0.9835299	CTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	108498215	12A2p6	cell line	sgMsh2	108498215	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	60	0	0	NA	exonic	Usp19	synonymous SNV	"Usp19:NM_145407:exon18:c.T2484C:p.R828R,Usp19:NM_001168371:exon19:c.T2559C:p.R853R,Usp19:NM_001168372:exon19:c.T2556C:p.R852R,Usp19:NM_001168373:exon19:c.T2553C:p.R851R,Usp19:NM_027804:exon19:c.T2556C:p.R852R"	9qF2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.383789601	2	0.0927261	GTT	synonymous	NA	NA	NA	NA
22-1_par	chr9	109109694	12A2p6	cell line	sgMsh2	109109699	CCGTTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.422	86	0	0	NA	exonic	Plxnb1	nonframeshift deletion	Plxnb1:NM_172775:exon21:c.4123_4128del:p.P1375_F1376del	9qF2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	2	1	NA	NA	GCC	inframe	NA	NA	NA	-6
22-1_par	chr9	109403397	12A2p6	cell line	sgMsh2	109403397	A	G	SNV	Mutect2;Vardict	2	0.019	509	0	0	NA	exonic	Fbxw22	nonsynonymous SNV	Fbxw22:NM_001014395:exon2:c.T119C:p.V40A	9qF2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.082863664	3	1	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chr9	110092407	12A2p6	cell line	sgMsh2	110092407	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	51	0	0	NA	exonic	Dhx30	nonsynonymous SNV	"Dhx30:NM_001252683:exon5:c.A785C:p.D262A,Dhx30:NM_133347:exon8:c.A767C:p.D256A,Dhx30:NM_001252682:exon9:c.A698C:p.D233A"	9qF2	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.444847038	2	0.9618308	GTC	nonsynonymous	TCA	8	TCATCATC	NA
22-1_par	chr9	123656240	12A2p6	cell line	sgMsh2	123656240	A	T	SNV	Mutect2;Vardict	2	0.037	153	0	0	NA	exonic	Slc6a20a	nonsynonymous SNV	Slc6a20a:NM_139142:exon6:c.T916A:p.Y306N	9qF4	chr9-3190600-124127055	4	2	2	0.9	3.925120919	POOR GOF (79.6%)	1	0.161366082	3	0.9998248	TAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	6316474	12A2p6	cell line	sgMsh2	6316474	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	132	0	0	NA	exonic	Bmp15	nonsynonymous SNV	Bmp15:NM_009757:exon2:c.T335G:p.V112G	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	7076237	12A2p6	cell line	sgMsh2	7076237	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	69	0	0	NA	exonic	Akap4	nonsynonymous SNV	"Akap4:NM_001042542:exon5:c.A778T:p.I260F,Akap4:NM_009651:exon5:c.A805T:p.I269F"	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	7675854	12A2p6	cell line	sgMsh2	7675854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	49	0	0	NA	exonic	Magix	synonymous SNV	Magix:NM_018832:exon5:c.A672G:p.G224G	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GTC	synonymous	NA	NA	NA	NA
22-1_par	chrX	8844966	12A2p6	cell line	sgMsh2	8844966	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	799	0	0	NA	exonic	Gm6592	nonsynonymous SNV	Gm6592:NM_001081564:exon3:c.A215C:p.K72T	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	8849536	12A2p6	cell line	sgMsh2	8849536	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	518	0	0	NA	exonic	Gm6592	stopgain	Gm6592:NM_001081564:exon6:c.C436T:p.R146X	XqA1.1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	35960722	12A2p6	cell line	sgMsh2	35960722	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	117	0	0	NA	exonic	Dock11	nonsynonymous SNV	Dock11:NM_001009947:exon7:c.A679T:p.I227F	XqA3.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	43592949	12A2p6	cell line	sgMsh2	43592949	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	151	0	0	NA	exonic	Tex13c1	nonsynonymous SNV	Tex13c1:NM_001195271:exon1:c.A1790C:p.Y597S	XqA4	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	49790624	12A2p6	cell line	sgMsh2	49790624	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	103	0	0	NA	exonic	Igsf1	synonymous SNV	"Igsf1:NM_183335:exon7:c.T1359C:p.T453T,Igsf1:NM_177591:exon8:c.T1359C:p.T453T"	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
22-1_par	chrX	50425923	12A2p6	cell line	sgMsh2	50425923	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	211	0	0	NA	exonic	Olfr1324	nonsynonymous SNV	Olfr1324:NM_146292:exon1:c.T572C:p.V191A	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	50900386	12A2p6	cell line	sgMsh2	50900386	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	125	0	0	NA	exonic	Frmd7	nonsynonymous SNV	Frmd7:NM_001190332:exon8:c.G681T:p.K227N	XqA5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	56654976	12A2p6	cell line	sgMsh2	56654976	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	103	0	0	NA	exonic	Slc9a6	synonymous SNV	"Slc9a6:NM_172780:exon14:c.T1653G:p.G551G,Slc9a6:NM_001358861:exon15:c.T1494G:p.G498G"	XqA6	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
22-1_par	chrX	56958793	12A2p6	cell line	sgMsh2	56958793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	210	0	0	NA	exonic	Adgrg4	synonymous SNV	Adgrg4:NM_001362885:exon16:c.A7926G:p.E2642E	XqA6	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
22-1_par	chrX	69767207	12A2p6	cell line	sgMsh2	69767207	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	340	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon7:c.A1183C:p.S395R	XqA7.2	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	71966605	12A2p6	cell line	sgMsh2	71966605	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	98	0	0	NA	exonic	Prrg3	nonsynonymous SNV	"Prrg3:NM_001081135:exon3:c.G111T:p.M37I,Prrg3:NM_001303028:exon3:c.G111T:p.M37I"	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	74319209	12A2p6	cell line	sgMsh2	74319209	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	255	0	0	NA	exonic	Fam50a	nonsynonymous SNV	Fam50a:NM_138607:exon11:c.A848C:p.D283A	XqA7.3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	79491169	12A2p6	cell line	sgMsh2	79491169	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	94	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon12:c.T2059G:p.L687V	XqB	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	93582120	12A2p6	cell line	sgMsh2	93582120	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	81	0	0	NA	exonic	Pola1	synonymous SNV	Pola1:NM_008892:exon19:c.T1932C:p.C644C	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
22-1_par	chrX	96715190	12A2p6	cell line	sgMsh2	96715190	T	A	SNV	Mutect2;Vardict	2	0.054	102	0	0	NA	exonic	Gpr165	nonsynonymous SNV	Gpr165:NM_029536:exon2:c.T576A:p.D192E	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	98780991	12A2p6	cell line	sgMsh2	98780991	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	204	0	0	NA	exonic	Ophn1	nonsynonymous SNV	"Ophn1:NM_001313755:exon4:c.T277G:p.L93V,Ophn1:NM_052976:exon4:c.T277G:p.L93V,Ophn1:NM_001313754:exon5:c.T277G:p.L93V"	XqC3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	112120267	12A2p6	cell line	sgMsh2	112120267	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	45	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A2429C:p.K810T	XqE1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AAA	nonsynonymous	A	5	AAAAA	NA
22-1_par	chrX	134312074	12A2p6	cell line	sgMsh2	134312074	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	162	0	0	NA	exonic	Cenpi	synonymous SNV	"Cenpi:NM_001305631:exon4:c.T301C:p.L101L,Cenpi:NM_145924:exon5:c.T301C:p.L101L"	XqE3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
22-1_par	chrX	134720835	12A2p6	cell line	sgMsh2	134720835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	92	0	0	NA	exonic	Armcx1	nonsynonymous SNV	"Armcx1:NM_001166378:exon4:c.G685A:p.A229T,Armcx1:NM_001166379:exon4:c.G685A:p.A229T,Armcx1:NM_001166380:exon5:c.G685A:p.A229T,Armcx1:NM_001166377:exon6:c.G685A:p.A229T,Armcx1:NM_030066:exon6:c.G685A:p.A229T"	XqE3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	134952039	12A2p6	cell line	sgMsh2	134952039	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	329	0	0	NA	exonic	Nxf2	nonsynonymous SNV	"Nxf2:NM_001289735:exon13:c.A1174G:p.T392A,Nxf2:NM_001289736:exon13:c.A1132G:p.T378A,Nxf2:NM_031259:exon13:c.A1174G:p.T392A"	XqE3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	135588234	12A2p6	cell line	sgMsh2	135588234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	108	0	0	NA	exonic	Nxf7	nonsynonymous SNV	"Nxf7:NM_001379677:exon7:c.C566A:p.A189E,Nxf7:NM_130888:exon8:c.C596A:p.A199E"	XqF1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	139514388	12A2p6	cell line	sgMsh2	139514388	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.105	52	0	0	NA	exonic	Radx	synonymous SNV	"Radx:NM_001358686:exon8:c.A426C:p.A142A,Radx:NM_001346522:exon9:c.A1725C:p.A575A,Radx:NM_175326:exon9:c.A1728C:p.A576A"	XqF1	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
22-1_par	chrX	142305771	12A2p6	cell line	sgMsh2	142305771	G	A	SNV	Mutect2;Vardict	2	0.096	35	0	0	NA	exonic	Kcne1l	synonymous SNV	Kcne1l:NM_021487:exon1:c.C255T:p.R85R	XqF2	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
22-1_par	chrX	151597357	12A2p6	cell line	sgMsh2	151597357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	163	0	0	NA	exonic	Phf8	nonsynonymous SNV	"Phf8:NM_177201:exon14:c.T1484C:p.V495A,Phf8:NM_001113354:exon15:c.T1787C:p.V596A"	XqF3	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	160903343	12A2p6	cell line	sgMsh2	160903343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	94	0	0	NA	exonic	Gja6	nonsynonymous SNV	Gja6:NM_001001496:exon2:c.T592C:p.C198R	XqF4	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
22-1_par	chrX	167474622	12A2p6	cell line	sgMsh2	167474622	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	50	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001368936:exon17:c.C4634G:p.S1545C,Frmpd4:NM_001369234:exon19:c.C4688G:p.S1563C"	XqF5	NA	NA	NA	NA	0.9	3.925120919	POOR GOF (79.6%)	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	13650798	12A2p6	cell line	sgMsh2	13650798	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	152	0	0	NA	exonic	Lactb2	nonsynonymous SNV	Lactb2:NM_145381:exon2:c.T209G:p.I70S	1qA3	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	0.9987281	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	14896557	12A2p6	cell line	sgMsh2	14896557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	exonic	Trpa1	nonsynonymous SNV	"Trpa1:NM_001348288:exon13:c.A1582G:p.T528A,Trpa1:NM_177781:exon13:c.A1582G:p.T528A"	1qA3	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624848752	2	0.7668868	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	20806826	12A2p6	cell line	sgMsh2	20806826	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	142	0	0	NA	exonic	Mcm3	nonsynonymous SNV	Mcm3:NM_008563:exon13:c.T1884A:p.H628Q	1qA4	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.9607876	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	21461593	12A2p6	cell line	sgMsh2	21461593	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	86	0	0	NA	exonic	Kcnq5	nonsynonymous SNV	Kcnq5:NM_001160139:exon10:c.A1265G:p.N422S	1qA4	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.8792293	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	25457004	12A2p6	cell line	sgMsh2	25457004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	210	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon12:c.A2095G:p.T699A	1qA5	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.9100796	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	26682904	12A2p6	cell line	sgMsh2	26682904	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	103	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.T3194C:p.V1065A	1qA5	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9735876	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	28778005	12A2p6	cell line	sgMsh2	28778005	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	144	0	0	NA	exonic	Gm597	synonymous SNV	Gm597:NM_001013750:exon2:c.A945G:p.V315V	1qA5	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9995643	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr1	30804677	12A2p6	cell line	sgMsh2	30804677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	101	0	0	NA	exonic	Phf3	nonsynonymous SNV	Phf3:NM_001081080:exon15:c.A5200G:p.T1734A	1qA5	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.9522949	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	34443695	12A2p6	cell line	sgMsh2	34443695	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	93	0	0	NA	exonic	Imp4	nonsynonymous SNV	Imp4:NM_178601:exon5:c.G439A:p.V147M	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5391709	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	34499348	12A2p6	cell line	sgMsh2	34499348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	99	0	0	NA	exonic	Prss39	nonsynonymous SNV	Prss39:NM_009355:exon2:c.T293C:p.I98T	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9685412	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	36174896	12A2p6	cell line	sgMsh2	36174896	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.112	41	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon23:c.G2562A:p.G854G	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.8789104	CCC	synonymous	NA	NA	NA	NA
22-2_par	chr1	36701836	12A2p6	cell line	sgMsh2	36701836	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.093	54	0	0	NA	exonic	Actr1b	nonsynonymous SNV	Actr1b:NM_146107:exon6:c.C506T:p.P169L	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.8282284	GGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	38207995	12A2p6	cell line	sgMsh2	38207995	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	164	0	0	NA	exonic	Aff3	nonsynonymous SNV	Aff3:NM_001290814:exon13:c.G2508T:p.K836N	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9962229	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	39650882	12A2p6	cell line	sgMsh2	39650882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	23	0	0	NA	exonic	Creg2	nonsynonymous SNV	Creg2:NM_170597:exon1:c.T59C:p.L20P	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.939520786	1	0.9169906	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	40011689	12A2p6	cell line	sgMsh2	40011689	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	179	0	0	NA	exonic	Map4k4	nonsynonymous SNV	Map4k4:NM_001252201:exon22:c.A2311G:p.N771D	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999855	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	40600898	12A2p6	cell line	sgMsh2	40600898	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	218	0	0	NA	exonic	Slc9a4	nonsynonymous SNV	Slc9a4:NM_177084:exon3:c.A849G:p.I283M	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9994294	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	40761931	12A2p6	cell line	sgMsh2	40761931	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	67	0	0	NA	exonic	Slc9a2	synonymous SNV	Slc9a2:NM_001033289:exon8:c.G1620T:p.R540R	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	8.83E-05	GGA	synonymous	NA	NA	NA	NA
22-2_par	chr1	40767957	12A2p6	cell line	sgMsh2	40767957	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	54	0	0	NA	exonic	Slc9a2	synonymous SNV	Slc9a2:NM_001033289:exon12:c.A2403G:p.E801E	1qB	chr1-3216742-43772110	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.463017421	2	0.9135905	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr1	43956624	12A2p6	cell line	sgMsh2	43956624	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	91	0	0	NA	exonic	Tpp2	nonsynonymous SNV	"Tpp2:NM_001310540:exon7:c.C938T:p.A313V,Tpp2:NM_009418:exon7:c.C938T:p.A313V"	1qC1.1	chr1-43774507-53702358	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.8919408	GCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	45909551	12A2p6	cell line	sgMsh2	45909551	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	94	0	0	NA	exonic	Slc40a1	nonsynonymous SNV	Slc40a1:NM_016917:exon8:c.T1568C:p.V523A	1qC1.1	chr1-43774507-53702358	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7475944	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	46807204	12A2p6	cell line	sgMsh2	46807204	A	G	SNV	Mutect2;MuSe;Vardict	3	0.068	233	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon65:c.A11914G:p.S3972G	1qC1.1	chr1-43774507-53702358	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.9664191	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	51768651	12A2p6	cell line	sgMsh2	51768651	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	248	0	0	NA	exonic	Myo1b	nonsynonymous SNV	Myo1b:NM_001161817:exon23:c.A2468G:p.K823R	1qC1.1	chr1-43774507-53702358	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999986	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	53933226	12A2p6	cell line	sgMsh2	53933226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	91	0	0	NA	exonic	Hecw2	nonsynonymous SNV	"Hecw2:NM_001001883:exon6:c.T634C:p.S212P,Hecw2:NM_172655:exon6:c.T634C:p.S212P"	1qC1.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7420635	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	54497554	12A2p6	cell line	sgMsh2	54497554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	165	0	0	NA	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon20:c.T1841C:p.L614S	1qC1.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.985735	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	55206355	12A2p6	cell line	sgMsh2	55206355	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	139	0	0	NA	exonic	Rftn2	synonymous SNV	"Rftn2:NM_001356287:exon2:c.T294G:p.A98A,Rftn2:NM_001356288:exon3:c.T327G:p.A109A,Rftn2:NM_028713:exon4:c.T696G:p.A232A"	1qC1.2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.647325326	1	7.35E-08	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr1	58530200	12A2p6	cell line	sgMsh2	58530200	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	98	0	0	NA	exonic	Fam126b	nonsynonymous SNV	"Fam126b:NM_001310599:exon12:c.T1051A:p.F351I,Fam126b:NM_172513:exon12:c.T1051A:p.F351I,Fam126b:NM_001310598:exon13:c.T1219A:p.F407I"	1qC1.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.9871984	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	60476909	12A2p6	cell line	sgMsh2	60476909	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	29	0	0	NA	exonic	Abi2	synonymous SNV	"Abi2:NM_198127:exon9:c.G1335A:p.S445S,Abi2:NM_001198571:exon11:c.G1437A:p.S479S"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9808089	CGG	synonymous	NA	NA	NA	NA
22-2_par	chr1	63065746	12A2p6	cell line	sgMsh2	63065746	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	90	0	0	NA	exonic	Ino80d	synonymous SNV	"Ino80d:NM_001081436:exon9:c.T1170C:p.I390I,Ino80d:NM_001114609:exon9:c.T1485C:p.I495I"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.6442453	TAA	synonymous	NA	NA	NA	NA
22-2_par	chr1	64736395	12A2p6	cell line	sgMsh2	64736395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	83	0	0	NA	exonic	Fzd5	nonsynonymous SNV	"Fzd5:NM_001042659:exon2:c.A206G:p.Q69R,Fzd5:NM_022721:exon2:c.A206G:p.Q69R"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9870749	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	65234315	12A2p6	cell line	sgMsh2	65234315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	128	0	0	NA	exonic	Pikfyve	nonsynonymous SNV	"Pikfyve:NM_001310624:exon15:c.T1888C:p.S630P,Pikfyve:NM_011086:exon15:c.T1753C:p.S585P"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	4.78E-09	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	65247017	12A2p6	cell line	sgMsh2	65247017	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	133	0	0	NA	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon20:c.T3414C:p.A1138A,Pikfyve:NM_011086:exon20:c.T3279C:p.A1093A"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9384623	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr1	65255128	12A2p6	cell line	sgMsh2	65255128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	115	0	0	NA	exonic	Pikfyve	nonsynonymous SNV	"Pikfyve:NM_001310624:exon25:c.T4226C:p.L1409P,Pikfyve:NM_011086:exon25:c.T4091C:p.L1364P"	1qC2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.975072	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
22-2_par	chr1	68250676	12A2p6	cell line	sgMsh2	68250676	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	45	0	0	NA	exonic	Erbb4	synonymous SNV	Erbb4:NM_010154:exon19:c.T2205C:p.G735G	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9983953	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr1	72652440	12A2p6	cell line	sgMsh2	72652440	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	116	0	0	NA	exonic	Ankar	nonsynonymous SNV	"Ankar:NM_001347063:exon18:c.G3358T:p.A1120S,Ankar:NM_176980:exon18:c.G3361T:p.A1121S"	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	2	0.9886874	GCC	nonsynonymous	ATGC	8	ATGCATGC	NA
22-2_par	chr1	72688623	12A2p6	cell line	sgMsh2	72688623	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.09	82	0	0	NA	exonic	Ankar	nonsynonymous SNV	"Ankar:NM_001347063:exon4:c.A1130G:p.Y377C,Ankar:NM_176980:exon4:c.A1130G:p.Y377C"	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.8720911	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	74576032	12A2p6	cell line	sgMsh2	74576032	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	98	0	0	NA	exonic	Zfp142	nonsynonymous SNV	"Zfp142:NM_001310668:exon5:c.T1621C:p.Y541H,Zfp142:NM_029888:exon5:c.T1312C:p.Y438H"	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	8.85E-06	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	74595293	12A2p6	cell line	sgMsh2	74595293	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	98	0	0	NA	exonic	Rnf25	synonymous SNV	"Rnf25:NM_001305230:exon8:c.C570T:p.V190V,Rnf25:NM_021313:exon8:c.C573T:p.V191V"	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	2	0.979261	CGA	synonymous	NA	NA	NA	NA
22-2_par	chr1	74605447	12A2p6	cell line	sgMsh2	74605447	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	119	0	0	NA	exonic	Stk36	nonsynonymous SNV	Stk36:NM_175031:exon5:c.T362C:p.I121T	1qC3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9899403	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	80586363	12A2p6	cell line	sgMsh2	80586363	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.103	48	0	0	NA	exonic	Dock10	nonsynonymous SNV	"Dock10:NM_001285927:exon13:c.C1532T:p.A511V,Dock10:NM_175291:exon13:c.C1568T:p.A523V"	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.463017421	2	0.09546021	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	83276482	12A2p6	cell line	sgMsh2	83276482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	224	0	0	NA	exonic	Sphkap	nonsynonymous SNV	"Sphkap:NM_172430:exon7:c.A3545G:p.Y1182C,Sphkap:NM_001356547:exon8:c.A3620G:p.Y1207C"	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9999173	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	84743136	12A2p6	cell line	sgMsh2	84743136	T	G	SNV	Mutect2;Vardict	2	0.037	145	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon29:c.A4375C:p.T1459P	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.9999233	GTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr1	86110689	12A2p6	cell line	sgMsh2	86110689	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	136	0	0	NA	exonic	Htr2b	nonsynonymous SNV	Htr2b:NM_008311:exon2:c.T194C:p.I65T	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.80806	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	86306110	12A2p6	cell line	sgMsh2	86306110	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	88	0	0	NA	exonic	B3gnt7	synonymous SNV	B3gnt7:NM_145222:exon2:c.A1077G:p.E359E	1qC5	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5347369	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr1	88201232	12A2p6	cell line	sgMsh2	88201232	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	229	0	0	NA	exonic	Ugt1a2	nonsynonymous SNV	Ugt1a2:NM_013701:exon1:c.G596T:p.R199M	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9883148	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	91344396	12A2p6	cell line	sgMsh2	91344396	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	45	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.C1477A:p.L493M	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	1	0.9202686	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	91417914	12A2p6	cell line	sgMsh2	91417914	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	34	0	0	NA	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon23:c.A3731T:p.E1244V	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.723745677	1	0.6733307	TTC	nonsynonymous	TCC	8	TCCTCCTC	NA
22-2_par	chr1	93325517	12A2p6	cell line	sgMsh2	93325517	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	105	0	0	NA	exonic	Pask	nonsynonymous SNV	Pask:NM_080850:exon8:c.A1147C:p.I383L	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.8050365	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	93725229	12A2p6	cell line	sgMsh2	93725229	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	71	0	0	NA	exonic	Thap4	nonsynonymous SNV	"Thap4:NM_001310761:exon2:c.C92T:p.P31L,Thap4:NM_025920:exon3:c.C1304T:p.P435L"	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	1	0.9831723	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	97885742	12A2p6	cell line	sgMsh2	97885742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	177	0	0	NA	exonic	Pam	nonsynonymous SNV	"Pam:NM_001357127:exon13:c.A962G:p.Y321C,Pam:NM_013626:exon13:c.A962G:p.Y321C"	1qD	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9997591	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	106318958	12A2p6	cell line	sgMsh2	106318958	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	65	0	0	NA	exonic	Phlpp1	nonsynonymous SNV	Phlpp1:NM_133821:exon4:c.A1877C:p.N626T	1qE2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.009866629	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	106727693	12A2p6	cell line	sgMsh2	106727693	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	105	0	0	NA	exonic	Kdsr	nonsynonymous SNV	Kdsr:NM_027534:exon9:c.A815G:p.Y272C	1qE2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9912057	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	107159748	12A2p6	cell line	sgMsh2	107159748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	232	0	0	NA	exonic	Serpinb3b	synonymous SNV	Serpinb3b:NM_198680:exon2:c.A30G:p.K10K	1qE2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	0.9999993	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr1	110949281	12A2p6	cell line	sgMsh2	110949281	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.136	109	0	0	NA	exonic	Cdh19	synonymous SNV	"Cdh19:NM_001081386:exon3:c.C327T:p.S109S,Cdh19:NM_001356415:exon4:c.C327T:p.S109S"	1qE2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.8240954	GGG	synonymous	T	5	TTTTT	NA
22-2_par	chr1	120488211	12A2p6	cell line	sgMsh2	120488211	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	120	0	0	NA	exonic	Marco	nonsynonymous SNV	Marco:NM_010766:exon8:c.A699G:p.I233M	1qE2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5360662	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	123334281	12A2p6	cell line	sgMsh2	123334281	C	A	SNV	Mutect2;Vardict	2	0.061	100	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon26:c.G2371T:p.V791L	1qE2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9243166	ACA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	126033804	12A2p6	cell line	sgMsh2	126033804	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.19	25	0	0	NA	exonic	Nckap5	nonsynonymous SNV	"Nckap5:NM_172484:exon9:c.C767T:p.T256M,Nckap5:NM_001081756:exon11:c.C971T:p.T324M"	1qE3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.854109805	1	0.8525779	CGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	128186834	12A2p6	cell line	sgMsh2	128186834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	0	0	NA	exonic	R3hdm1	synonymous SNV	"R3hdm1:NM_001357482:exon16:c.A1551G:p.Q517Q,R3hdm1:NM_181750:exon16:c.A1551G:p.Q517Q"	1qE3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.999995	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr1	128197091	12A2p6	cell line	sgMsh2	128197091	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	130	0	0	NA	exonic	R3hdm1	nonsynonymous SNV	"R3hdm1:NM_001357482:exon19:c.C2143T:p.H715Y,R3hdm1:NM_181750:exon19:c.C2143T:p.H715Y"	1qE3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.8294607	GCA	nonsynonymous	GCACA	10	GCACAGCACA	NA
22-2_par	chr1	130811376	12A2p6	cell line	sgMsh2	130811376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	13	0	0	NA	exonic	Fcamr	nonsynonymous SNV	"Fcamr:NM_001170632:exon4:c.A412G:p.N138D,Fcamr:NM_144960:exon4:c.A244G:p.N82D"	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.8022143	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	130880640	12A2p6	cell line	sgMsh2	130880640	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	175	0	0	NA	exonic	Fcmr	nonsynonymous SNV	Fcmr:NM_026976:exon8:c.T1258A:p.S420T	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9998939	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	131265734	12A2p6	cell line	sgMsh2	131265734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	40	0	0	NA	exonic	Ikbke	synonymous SNV	Ikbke:NM_019777:exon15:c.A1530G:p.K510K	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	1	0.8840292	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr1	132302999	12A2p6	cell line	sgMsh2	132302999	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	70	0	0	NA	exonic	Klhdc8a	nonsynonymous SNV	Klhdc8a:NM_144810:exon3:c.T601C:p.S201P	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9522	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	132610463	12A2p6	cell line	sgMsh2	132610463	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	150	0	0	NA	exonic	Nfasc	nonsynonymous SNV	"Nfasc:NM_001160316:exon12:c.A1439C:p.Q480P,Nfasc:NM_001160318:exon13:c.A1388C:p.Q463P,Nfasc:NM_001160317:exon14:c.A1439C:p.Q480P,Nfasc:NM_182716:exon14:c.A1406C:p.Q469P"	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.211279794	3	0.9993395	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	133266597	12A2p6	cell line	sgMsh2	133266597	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	67	0	0	NA	exonic	Plekha6	frameshift deletion	"Plekha6:NM_001160268:exon6:c.312delC:p.L106Cfs*1,Plekha6:NM_182930:exon6:c.312delC:p.L106Cfs*1"	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	NA	NA	TCC	frameshift	C	5	CCCCC	-1
22-2_par	chr1	138113623	12A2p6	cell line	sgMsh2	138113623	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	209	0	0	NA	exonic	Ptprc	nonsynonymous SNV	"Ptprc:NM_001268286:exon5:c.T278C:p.I93T,Ptprc:NM_011210:exon6:c.T350C:p.I117T,Ptprc:NM_001111316:exon8:c.T767C:p.I256T"	1qE4	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9984373	GAT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr1	139491676	12A2p6	cell line	sgMsh2	139491676	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	101	0	0	NA	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon26:c.G9078A:p.K3026K	1qF	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9843561	AGA	synonymous	NA	NA	NA	NA
22-2_par	chr1	140108904	12A2p6	cell line	sgMsh2	140108904	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	93	0	0	NA	exonic	Cfh	nonsynonymous SNV	Cfh:NM_009888:exon13:c.T1961G:p.L654R	1qF	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9670691	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	150460727	12A2p6	cell line	sgMsh2	150460727	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	76	0	0	NA	exonic	Prg4	nonsynonymous SNV	"Prg4:NM_001110146:exon4:c.A244T:p.R82W,Prg4:NM_021400:exon4:c.A244T:p.R82W"	1qG1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.8850747	CTC	nonsynonymous	CTCC	11	CTCCCTCCCTC	NA
22-2_par	chr1	150772498	12A2p6	cell line	sgMsh2	150772498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	139	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon13:c.A2036G:p.Y679C	1qG1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.9864354	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	151360740	12A2p6	cell line	sgMsh2	151360740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	148	0	0	NA	exonic	Ivns1abp	synonymous SNV	"Ivns1abp:NM_001039512:exon10:c.T1017C:p.C339C,Ivns1abp:NM_001359262:exon10:c.T1017C:p.C339C,Ivns1abp:NM_001359263:exon10:c.T300C:p.C100C,Ivns1abp:NM_054102:exon11:c.T1143C:p.C381C"	1qG1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.732736307	1	0.9967835	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr1	151403020	12A2p6	cell line	sgMsh2	151403020	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	72	0	0	NA	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon10:c.A1385G:p.N462S	1qG1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.948511415	1	0.9998857	GTT	nonsynonymous	TGT	8	TGTTGTTG	NA
22-2_par	chr1	151980512	12A2p6	cell line	sgMsh2	151980512	T	C	SNV	Mutect2;Vardict	2	0.064	82	0	0	NA	exonic	1700025G04Rik	nonsynonymous SNV	1700025G04Rik:NM_197990:exon3:c.A103G:p.R35G	1qG2	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8338085	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	152830357	12A2p6	cell line	sgMsh2	152830357	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	144	0	0	NA	exonic	Ncf2	nonsynonymous SNV	Ncf2:NM_010877:exon9:c.T719A:p.L240Q	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.678792529	1	0.09366569	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	153143863	12A2p6	cell line	sgMsh2	153143863	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	82	0	0	NA	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon11:c.A1331G:p.D444G	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.538428	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	153255345	12A2p6	cell line	sgMsh2	153255345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	58	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon4:c.A859C:p.N287H	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.970987989	1	0.9995692	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	153425293	12A2p6	cell line	sgMsh2	153425293	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.214	18	0	0	NA	exonic	Shcbp1l	nonsynonymous SNV	Shcbp1l:NM_001033162:exon1:c.A70C:p.T24P	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.96199736	1	0.8713258	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	155863551	12A2p6	cell line	sgMsh2	155863551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	83	0	0	NA	exonic	Cep350	nonsynonymous SNV	Cep350:NM_001039184:exon34:c.A6545G:p.K2182R	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.985959	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	156681531	12A2p6	cell line	sgMsh2	156681531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	54	0	0	NA	exonic	Fam20b	synonymous SNV	Fam20b:NM_145413:exon8:c.A1110G:p.P370P	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9373324	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr1	157140728	12A2p6	cell line	sgMsh2	157140728	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	78	0	0	NA	exonic	Rasal2	nonsynonymous SNV	Rasal2:NM_177644:exon18:c.A3844G:p.K1282E	1qG3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.8095519	TTG	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr1	158814484	12A2p6	cell line	sgMsh2	158814484	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	160	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon14:c.T4001C:p.V1334A	1qH1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9904268	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	161090442	12A2p6	cell line	sgMsh2	161090442	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.104	117	0	0	NA	exonic	Klhl20	frameshift deletion	Klhl20:NM_001039482:exon12:c.1800delA:p.E600Dfs*33	1qH2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	NA	NA	ATT	frameshift	NA	NA	NA	-1
22-2_par	chr1	163933619	12A2p6	cell line	sgMsh2	163933619	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	131	0	0	NA	exonic	Scyl3	synonymous SNV	"Scyl3:NM_001286002:exon2:c.T91C:p.L31L,Scyl3:NM_028776:exon2:c.T91C:p.L31L"	1qH2.1	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9888327	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr1	165897683	12A2p6	cell line	sgMsh2	165897683	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	92	0	0	NA	exonic	Pou2f1	synonymous SNV	"Pou2f1:NM_001368808:exon10:c.C1005T:p.L335L,Pou2f1:NM_011137:exon10:c.C1074T:p.L358L,Pou2f1:NM_198932:exon10:c.C1074T:p.L358L,Pou2f1:NM_198933:exon10:c.C1041T:p.L347L,Pou2f1:NM_198934:exon10:c.C1041T:p.L347L"	1qH2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9906617	TGA	synonymous	NA	NA	NA	NA
22-2_par	chr1	167445908	12A2p6	cell line	sgMsh2	167445908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	91	0	0	NA	exonic	Lrrc52	nonsynonymous SNV	Lrrc52:NM_001013382:exon2:c.T838C:p.S280P	1qH2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.826404	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	167844682	12A2p6	cell line	sgMsh2	167844682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	53	0	0	NA	exonic	Lmx1a	nonsynonymous SNV	Lmx1a:NM_033652:exon7:c.T868C:p.Y290H	1qH2.3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9995394	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	170794025	12A2p6	cell line	sgMsh2	170794025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	128	0	0	NA	exonic	Atf6	nonsynonymous SNV	Atf6:NM_001081304:exon12:c.A1426G:p.R476G	1qH3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.09413734	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	172376769	12A2p6	cell line	sgMsh2	172376769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	20	0	0	NA	exonic	Pigm	nonsynonymous SNV	Pigm:NM_026234:exon1:c.T71C:p.V24A	1qH3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9257064	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	172505253	12A2p6	cell line	sgMsh2	172505253	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	37	0	0	NA	exonic	Tagln2	nonsynonymous SNV	Tagln2:NM_178598:exon2:c.A106G:p.T36A	1qH3	chr1-53706346-173469050	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9944248	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr1	174117784	12A2p6	cell line	sgMsh2	174117784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	143	0	0	NA	exonic	Olfr231	synonymous SNV	Olfr231:NM_001005520:exon1:c.C231T:p.S77S	1qH3	chr1-173922231-195166209	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.908053582	1	0.9999999	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr1	174158921	12A2p6	cell line	sgMsh2	174158921	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	135	0	0	NA	exonic	Olfr420	synonymous SNV	Olfr420:NM_146305:exon1:c.C147T:p.V49V	1qH3	chr1-173922231-195166209	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9105736	TCC	synonymous	NA	NA	NA	NA
22-2_par	chr1	175892918	12A2p6	cell line	sgMsh2	175892918	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	117	0	0	NA	exonic	Exo1	synonymous SNV	Exo1:NM_012012:exon8:c.G801A:p.V267V	1qH4	chr1-173922231-195166209	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9717881	TGC	synonymous	NA	NA	NA	NA
22-2_par	chr1	181130822	12A2p6	cell line	sgMsh2	181130822	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.099	70	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon7:c.A661G:p.R221G	1qH4	chr1-173922231-195166209	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.9357092	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	4353405	12A2p6	cell line	sgMsh2	4353405	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.A529G:p.T177A	10qA1	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.795487	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	11189703	12A2p6	cell line	sgMsh2	11189703	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	149	0	0	NA	exonic	Shprh	stopgain	"Shprh:NM_001077707:exon22:c.C4054T:p.R1352X,Shprh:NM_001284354:exon22:c.C4054T:p.R1352X,Shprh:NM_172937:exon22:c.C4054T:p.R1352X"	10qA1	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9997979	GCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	14438490	12A2p6	cell line	sgMsh2	14438490	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	132	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon13:c.T1967C:p.L656P	10qA2	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9728265	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	18129024	12A2p6	cell line	sgMsh2	18129024	A	G	SNV	Mutect2;Vardict	2	0.083	67	0	0	NA	exonic	Ect2l	stoploss	"Ect2l:NM_001195036:exon21:c.T2734C:p.X912Q,Ect2l:NM_001370991:exon22:c.T2860C:p.X954Q"	10qA3	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.6949422	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	24037946	12A2p6	cell line	sgMsh2	24037946	C	T	SNV	Mutect2;MuSe;Vardict	3	0.057	313	0	0	NA	exonic	Taar7e	synonymous SNV	Taar7e:NM_001010835:exon1:c.C333T:p.G111G	10qA4	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9999657	GCT	synonymous	NA	NA	NA	NA
22-2_par	chr10	24282746	12A2p6	cell line	sgMsh2	24282746	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	91	0	0	NA	exonic	Moxd1	nonsynonymous SNV	Moxd1:NM_021509:exon8:c.A1297C:p.I433L	10qA4	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.9891815	AAT	nonsynonymous	AACA	9	AACAAACAA	NA
22-2_par	chr10	24655852	12A2p6	cell line	sgMsh2	24655852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	154	0	0	NA	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon16:c.A1532G:p.Y511C,Enpp1:NM_001308329:exon16:c.A476G:p.Y159C,Enpp1:NM_008813:exon16:c.A1532G:p.Y511C"	10qA4	chr10-3120209-31951367	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.656315956	1	0.731069	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	39147769	12A2p6	cell line	sgMsh2	39147769	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	34	0	0	NA	exonic	Tube1	synonymous SNV	Tube1:NM_028006:exon11:c.A1101G:p.K367K	10qB1	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.719250362	1	0.6588151	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr10	40934641	12A2p6	cell line	sgMsh2	40934641	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	40	0	0	NA	exonic	Wasf1	nonsynonymous SNV	"Wasf1:NM_001379453:exon7:c.C878T:p.T293I,Wasf1:NM_001379454:exon7:c.C875T:p.T292I,Wasf1:NM_031877:exon7:c.C878T:p.T293I"	10qB1	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.997959878	1	0.9963803	ACA	nonsynonymous	CACC	8	CACCCACC	NA
22-2_par	chr10	41927069	12A2p6	cell line	sgMsh2	41927069	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.182	33	0	0	NA	exonic	Armc2	nonsynonymous SNV	Armc2:NM_001034858:exon13:c.G1607A:p.G536D	10qB2	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	0.8819129	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	43021931	12A2p6	cell line	sgMsh2	43021931	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.367	23	0	0	NA	exonic	Sobp	frameshift insertion	Sobp:NM_175407:exon6:c.1656dupC:p.N553Qfs*246	10qB2	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	TTG	frameshift	G	5	GGGGG	1
22-2_par	chr10	50649840	12A2p6	cell line	sgMsh2	50649840	T	-	Deletion	Mutect2;Vardict	2	0.064	101	0	0	NA	exonic	Ascc3	frameshift deletion	Ascc3:NM_198007:exon10:c.1647delT:p.Y550Tfs*4	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	NA	NA	ATT	frameshift	NA	NA	NA	-1
22-2_par	chr10	50707713	12A2p6	cell line	sgMsh2	50707713	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	122	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon17:c.T2757G:p.S919R	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9960024	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	51626505	12A2p6	cell line	sgMsh2	51626505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	99	0	0	NA	exonic	Gprc6a	nonsynonymous SNV	Gprc6a:NM_153071:exon3:c.G1261A:p.A421T	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	2	0.994099	GCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	53647646	12A2p6	cell line	sgMsh2	53647646	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	170	0	0	NA	exonic	Fam184a	synonymous SNV	Fam184a:NM_001081428:exon13:c.T2703C:p.N901N	10qB3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.9999855	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr10	57811301	12A2p6	cell line	sgMsh2	57811301	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	192	0	0	NA	exonic	Smpdl3a	nonsynonymous SNV	Smpdl3a:NM_020561:exon8:c.A1124G:p.Y375C	10qB4	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.211279794	3	0.999919	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	62640800	12A2p6	cell line	sgMsh2	62640800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	91	0	0	NA	exonic	Ddx50	nonsynonymous SNV	"Ddx50:NM_053183:exon5:c.A693G:p.I231M,Ddx50:NM_001358819:exon6:c.A498G:p.I166M,Ddx50:NM_001358820:exon6:c.A498G:p.I166M"	10qB4	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.602372178	2	0.8498789	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	62764382	12A2p6	cell line	sgMsh2	62764382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	98	0	0	NA	exonic	Ccar1	nonsynonymous SNV	Ccar1:NM_026201:exon14:c.A1769G:p.Y590C	10qB4	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9704786	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	62966468	12A2p6	cell line	sgMsh2	62966468	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	119	0	0	NA	exonic	Dna2	synonymous SNV	Dna2:NM_177372:exon16:c.C2457T:p.S819S	10qB4	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	1.64E-08	GCG	synonymous	NA	NA	NA	NA
22-2_par	chr10	69927727	12A2p6	cell line	sgMsh2	69927727	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	96	0	0	NA	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_009670:exon2:c.T49C:p.Y17H,Ank3:NM_170687:exon2:c.T49C:p.Y17H,Ank3:NM_170728:exon23:c.T2533C:p.Y845H,Ank3:NM_170729:exon23:c.T2533C:p.Y845H,Ank3:NM_170689:exon24:c.T2596C:p.Y866H,Ank3:NM_170690:exon24:c.T2587C:p.Y863H,Ank3:NM_146005:exon25:c.T2650C:p.Y884H,Ank3:NM_170688:exon25:c.T2650C:p.Y884H"	10qB5.3	chr10-33467866-74324794	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5767996	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	75181573	12A2p6	cell line	sgMsh2	75181573	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	109	0	0	NA	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon22:c.G3565T:p.A1189S	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	0.5083476	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	75715689	12A2p6	cell line	sgMsh2	75715689	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.124	43	0	0	NA	exonic	Cabin1	nonsynonymous SNV	Cabin1:NM_172549:exon25:c.G3848A:p.G1283D	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.8534976	ACC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	75818528	12A2p6	cell line	sgMsh2	75818528	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	103	0	0	NA	exonic	Gstt4	nonsynonymous SNV	Gstt4:NM_029472:exon3:c.T323C:p.V108A	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.5898613	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	76276432	12A2p6	cell line	sgMsh2	76276432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	45	0	0	NA	exonic	Dip2a	synonymous SNV	Dip2a:NM_001081419:exon28:c.A3258G:p.K1086K	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.970987989	1	0.9972111	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr10	77864859	12A2p6	cell line	sgMsh2	77864859	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	60	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon3:c.G522A:p.T174T	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.6801916	CGG	synonymous	NA	NA	NA	NA
22-2_par	chr10	77941179	12A2p6	cell line	sgMsh2	77941179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	148	0	0	NA	exonic	Trpm2	nonsynonymous SNV	Trpm2:NM_138301:exon11:c.T1283C:p.V428A	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.476503365	2	0.9992596	CAC	nonsynonymous	CCACAT	14	CCACATCCACATCC	NA
22-2_par	chr10	78204293	12A2p6	cell line	sgMsh2	78204293	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	188	0	0	NA	exonic	Trappc10	nonsynonymous SNV	Trappc10:NM_001081055:exon14:c.A1823T:p.E608V	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.9624422	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	78577345	12A2p6	cell line	sgMsh2	78577345	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	131	0	0	NA	exonic	Ilvbl	nonsynonymous SNV	"Ilvbl:NM_001359302:exon5:c.C608A:p.P203Q,Ilvbl:NM_001359303:exon5:c.C608A:p.P203Q,Ilvbl:NM_001359301:exon6:c.C638A:p.P213Q,Ilvbl:NM_173751:exon6:c.C608A:p.P203Q"	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.9601355	CCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	78583698	12A2p6	cell line	sgMsh2	78583698	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	34	0	0	NA	exonic	Ilvbl	synonymous SNV	"Ilvbl:NM_001359302:exon13:c.T1611C:p.H537H,Ilvbl:NM_001359301:exon14:c.T1641C:p.H547H,Ilvbl:NM_173751:exon14:c.T1611C:p.H537H"	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9629849	ATA	synonymous	NA	NA	NA	NA
22-2_par	chr10	78612583	12A2p6	cell line	sgMsh2	78612583	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	101	0	0	NA	exonic	Olfr1357	nonsynonymous SNV	Olfr1357:NM_001011737:exon2:c.G57T:p.E19D	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9817935	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	78801907	12A2p6	cell line	sgMsh2	78801907	T	C	SNV	Mutect2;Vardict	2	0.054	92	0	0	NA	exonic	Slc1a6	synonymous SNV	Slc1a6:NM_009200:exon8:c.T1266C:p.D422D	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9662932	ATG	synonymous	ATGG	8	ATGGATGG	NA
22-2_par	chr10	79396536	12A2p6	cell line	sgMsh2	79396536	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	278	0	0	NA	exonic	Vmn2r82	nonsynonymous SNV	Vmn2r82:NM_001101572:exon6:c.A2368G:p.M790V	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.9977513	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	79737479	12A2p6	cell line	sgMsh2	79737479	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	60	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon16:c.A3211G:p.T1071A	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.6973739	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	80179826	12A2p6	cell line	sgMsh2	80179826	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	22	0	0	NA	exonic	Efna2	nonsynonymous SNV	Efna2:NM_007909:exon1:c.A64G:p.N22D	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.8687621	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	80417558	12A2p6	cell line	sgMsh2	80417558	G	A	SNV	Mutect2;Vardict	2	0.129	36	0	0	NA	exonic	Tcf3	nonsynonymous SNV	"Tcf3:NM_001164147:exon9:c.C638T:p.P213L,Tcf3:NM_001164148:exon9:c.C638T:p.P213L,Tcf3:NM_001164149:exon9:c.C635T:p.P212L,Tcf3:NM_001164150:exon9:c.C638T:p.P213L,Tcf3:NM_001164151:exon9:c.C635T:p.P212L,Tcf3:NM_001164152:exon9:c.C638T:p.P213L,Tcf3:NM_001164153:exon9:c.C635T:p.P212L,Tcf3:NM_001378903:exon9:c.C635T:p.P212L,Tcf3:NM_001378904:exon9:c.C638T:p.P213L,Tcf3:NM_001378905:exon9:c.C635T:p.P212L,Tcf3:NM_001378908:exon9:c.C638T:p.P213L,Tcf3:NM_001378910:exon9:c.C635T:p.P212L,Tcf3:NM_001378912:exon9:c.C638T:p.P213L,Tcf3:NM_001378913:exon9:c.C635T:p.P212L,Tcf3:NM_001378914:exon9:c.C635T:p.P212L,Tcf3:NM_011548:exon9:c.C635T:p.P212L"	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.7766713	GGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	80786089	12A2p6	cell line	sgMsh2	80786089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	49	0	0	NA	exonic	Dot1l	nonsynonymous SNV	Dot1l:NM_199322:exon20:c.A2225G:p.D742G	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.7805657	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	80890461	12A2p6	cell line	sgMsh2	80890461	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	22	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon10:c.T1544A:p.V515E	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.894567638	1	0.8638628	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	80897362	12A2p6	cell line	sgMsh2	80897362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	36	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon15:c.T2731C:p.F911L	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.926034841	1	0.9801161	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	81499560	12A2p6	cell line	sgMsh2	81499560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	22	0	0	NA	exonic	S1pr4	nonsynonymous SNV	S1pr4:NM_010102:exon1:c.A79G:p.I27V	10qC1	chr10-74325760-82492848	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9446651	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	85893144	12A2p6	cell line	sgMsh2	85893144	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	73	0	0	NA	exonic	Prdm4	nonsynonymous SNV	"Prdm4:NM_181650:exon11:c.T2398G:p.S800A,Prdm4:NM_001302886:exon12:c.T2377G:p.S793A,Prdm4:NM_001302887:exon12:c.T1831G:p.S611A"	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.8772574	GAG	nonsynonymous	GA	8	GAGAGAGA	NA
22-2_par	chr10	87930724	12A2p6	cell line	sgMsh2	87930724	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	100	0	0	NA	exonic	Igf1	nonsynonymous SNV	"Igf1:NM_001111275:exon4:c.A452G:p.Y151C,Igf1:NM_001111276:exon4:c.A404G:p.Y135C,Igf1:NM_001314010:exon5:c.A452G:p.Y151C"	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	0.5040541	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	88503631	12A2p6	cell line	sgMsh2	88503631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	108	0	0	NA	exonic	Chpt1	nonsynonymous SNV	"Chpt1:NM_001146690:exon1:c.T227C:p.V76A,Chpt1:NM_144807:exon1:c.T227C:p.V76A"	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9959862	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	88791747	12A2p6	cell line	sgMsh2	88791747	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	286	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon24:c.C2855T:p.A952V	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9999155	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	88798483	12A2p6	cell line	sgMsh2	88798483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	124	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon21:c.A2350G:p.T784A	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9772816	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	88809729	12A2p6	cell line	sgMsh2	88809729	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	161	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon14:c.G1661T:p.G554V	10qC1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.998113	CCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	93464483	12A2p6	cell line	sgMsh2	93464483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	190	0	0	NA	exonic	Lta4h	synonymous SNV	"Lta4h:NM_001313897:exon4:c.T450C:p.T150T,Lta4h:NM_008517:exon4:c.T450C:p.T150T"	10qC2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.211279794	3	0.9999105	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr10	94750563	12A2p6	cell line	sgMsh2	94750563	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	79	0	0	NA	exonic	Cep83	nonsynonymous SNV	Cep83:NM_029852:exon10:c.A1220G:p.D407G	10qC2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9584297	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	95549416	12A2p6	cell line	sgMsh2	95549416	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	99	0	0	NA	exonic	Nudt4	nonsynonymous SNV	"Nudt4:NM_001358996:exon5:c.T415C:p.Y139H,Nudt4:NM_027722:exon5:c.T412C:p.Y138H"	10qC2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.8119103	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	103009332	12A2p6	cell line	sgMsh2	103009332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	54	0	0	NA	exonic	Alx1	synonymous SNV	Alx1:NM_172553:exon4:c.T837C:p.N279N	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.570904975	2	0.8724734	AAT	synonymous	A	5	AAAAA	NA
22-2_par	chr10	103215605	12A2p6	cell line	sgMsh2	103215605	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	253	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	"Lrriq1:NM_001163559:exon8:c.A1285G:p.T429A,Lrriq1:NM_001361058:exon8:c.A1285G:p.T429A,Lrriq1:NM_029134:exon8:c.A1285G:p.T429A"	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.157336017	3	2.61E-08	GTA	nonsynonymous	TACCCT	13	TACCCTTACCCTT	NA
22-2_par	chr10	107004793	12A2p6	cell line	sgMsh2	107004793	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	75	0	0	NA	exonic	Acss3	nonsynonymous SNV	"Acss3:NM_001142804:exon8:c.A1106C:p.D369A,Acss3:NM_198636:exon8:c.A1106C:p.D369A"	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.9603083	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	107652598	12A2p6	cell line	sgMsh2	107652598	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	86	0	0	NA	exonic	Ptprq	nonsynonymous SNV	"Ptprq:NM_001081432:exon19:c.T2977C:p.F993L,Ptprq:NM_001370987:exon19:c.T2980C:p.F994L"	10qD1	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9523587	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	112195925	12A2p6	cell line	sgMsh2	112195925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	249	0	0	NA	exonic	Caps2	nonsynonymous SNV	"Caps2:NM_178278:exon11:c.T965A:p.I322N,Caps2:NM_001310675:exon12:c.T839A:p.I280N"	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.8535911	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	116498143	12A2p6	cell line	sgMsh2	116498143	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	208	0	0	NA	exonic	Cnot2	nonsynonymous SNV	"Cnot2:NM_001359253:exon7:c.T551C:p.V184A,Cnot2:NM_001359563:exon9:c.T866C:p.V289A,Cnot2:NM_028082:exon10:c.T998C:p.V333A,Cnot2:NM_001037846:exon11:c.T1121C:p.V374A,Cnot2:NM_001037847:exon11:c.T1151C:p.V384A,Cnot2:NM_001359247:exon12:c.T1094C:p.V365A,Cnot2:NM_001359248:exon12:c.T1094C:p.V365A,Cnot2:NM_001359249:exon12:c.T1094C:p.V365A,Cnot2:NM_001359250:exon12:c.T1094C:p.V365A,Cnot2:NM_001359251:exon12:c.T1094C:p.V365A,Cnot2:NM_001359252:exon12:c.T1094C:p.V365A"	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.148345387	3	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	116861491	12A2p6	cell line	sgMsh2	116861491	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	144	0	0	NA	exonic	Myrfl	nonsynonymous SNV	Myrfl:NM_001033333:exon2:c.T127G:p.L43V	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	2	0.9955768	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	119216690	12A2p6	cell line	sgMsh2	119216690	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	85	0	0	NA	exonic	Cand1	nonsynonymous SNV	Cand1:NM_027994:exon5:c.T509C:p.V170A	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.566936	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	120102849	12A2p6	cell line	sgMsh2	120102849	A	G	SNV	Mutect2;Vardict	2	0.065	92	0	0	NA	exonic	Helb	synonymous SNV	Helb:NM_080446:exon5:c.T1719C:p.S573S	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.8426872	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr10	123146921	12A2p6	cell line	sgMsh2	123146921	T	C	SNV	Mutect2;Vardict	2	0.059	90	0	0	NA	exonic	Usp15	nonsynonymous SNV	"Usp15:NM_001301628:exon7:c.A701G:p.Y234C,Usp15:NM_027604:exon8:c.A788G:p.Y263C"	10qD2	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9264325	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	127066930	12A2p6	cell line	sgMsh2	127066930	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	136	0	0	NA	exonic	Cdk4	nonsynonymous SNV	"Cdk4:NM_001355005:exon7:c.A599T:p.E200V,Cdk4:NM_009870:exon8:c.A821T:p.E274V"	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.8747778	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	127300556	12A2p6	cell line	sgMsh2	127300556	A	G	SNV	Mutect2;Vardict	2	0.091	68	0	0	NA	exonic	Mars1	synonymous SNV	"Mars1:NM_001003913:exon12:c.T1399C:p.L467L,Mars1:NM_001171582:exon12:c.T1399C:p.L467L"	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.8494727	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr10	128308072	12A2p6	cell line	sgMsh2	128308072	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.108	49	0	0	NA	exonic	Pan2	nonsynonymous SNV	"Pan2:NM_001252326:exon3:c.C290T:p.A97V,Pan2:NM_133992:exon3:c.C290T:p.A97V"	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9133511	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	128326226	12A2p6	cell line	sgMsh2	128326226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	175	0	0	NA	exonic	Cnpy2	nonsynonymous SNV	Cnpy2:NM_019953:exon4:c.A367G:p.I123V	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9980747	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	128545358	12A2p6	cell line	sgMsh2	128545358	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	131	0	0	NA	exonic	Zc3h10	nonsynonymous SNV	Zc3h10:NM_134003:exon3:c.A129T:p.R43S	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9880862	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	128581804	12A2p6	cell line	sgMsh2	128581804	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.075	193	0	0	NA	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon9:c.A1069G:p.I357V	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6256488	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	128581806	12A2p6	cell line	sgMsh2	128581806	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.075	193	0	0	NA	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon9:c.A1067T:p.K356M	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6256488	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	129238478	12A2p6	cell line	sgMsh2	129238478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	205	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T328C:p.F110L	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.76420351	1	0.9999817	GTT	nonsynonymous	TTCT	9	TTCTTTCTT	NA
22-2_par	chr10	129501807	12A2p6	cell line	sgMsh2	129501807	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	36	0	0	NA	exonic	Olfr790	frameshift deletion	Olfr790:NM_146933:exon1:c.922delA:p.N309Tfs*1	10qD3	chr10-82619830-129526639	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
22-2_par	chr10	129912173	12A2p6	cell line	sgMsh2	129912173	A	T	SNV	Mutect2;Vardict	2	0.03	270	0	0	NA	exonic	Olfr816	nonsynonymous SNV	Olfr816:NM_146672:exon1:c.T104A:p.L35H	10qD3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr10	129912187	12A2p6	cell line	sgMsh2	129912187	A	C	SNV	Mutect2;Vardict	2	0.025	265	0	0	NA	exonic	Olfr816	synonymous SNV	Olfr816:NM_146672:exon1:c.T90G:p.L30L	10qD3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr10	130271086	12A2p6	cell line	sgMsh2	130271086	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	49	0	0	NA	exonic	Neurod4	synonymous SNV	"Neurod4:NM_001329489:exon2:c.C318A:p.A106A,Neurod4:NM_001329490:exon2:c.C318A:p.A106A,Neurod4:NM_007501:exon2:c.C318A:p.A106A"	10qD3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
22-2_par	chr11	3419961	12A2p6	cell line	sgMsh2	3419961	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	60	0	0	NA	exonic	Rnf185	nonsynonymous SNV	"Rnf185:NM_001290473:exon5:c.T241C:p.F81L,Rnf185:NM_001290472:exon6:c.T382C:p.F128L,Rnf185:NM_145355:exon7:c.T490C:p.F164L"	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5642577	AAT	nonsynonymous	TCCAAA	15	TCCAAATCCAAATCC	NA
22-2_par	chr11	4220202	12A2p6	cell line	sgMsh2	4220202	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	92	0	0	NA	exonic	Castor1	synonymous SNV	Castor1:NM_028022:exon3:c.A279G:p.V93V	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.97446	TAA	synonymous	NA	NA	NA	NA
22-2_par	chr11	4408697	12A2p6	cell line	sgMsh2	4408697	T	C	SNV	Mutect2;Vardict	2	0.059	87	0	0	NA	exonic	Hormad2	nonsynonymous SNV	Hormad2:NM_029458:exon10:c.A709G:p.T237A	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9200391	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	4520886	12A2p6	cell line	sgMsh2	4520886	T	G	SNV	Mutect2;Vardict	2	0.043	130	0	0	NA	exonic	Mtmr3	nonsynonymous SNV	"Mtmr3:NM_001373897:exon5:c.A239C:p.E80A,Mtmr3:NM_028860:exon5:c.A239C:p.E80A"	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9992421	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	5902302	12A2p6	cell line	sgMsh2	5902302	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	20	0	0	NA	exonic	Gck	frameshift deletion	"Gck:NM_001287386:exon9:c.1036delA:p.R346Gfs*6,Gck:NM_010292:exon9:c.1036delA:p.R346Gfs*6"	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.944016101	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-2_par	chr11	9290840	12A2p6	cell line	sgMsh2	9290840	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	151	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon17:c.T2702C:p.I901T	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.7965662	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	11761299	12A2p6	cell line	sgMsh2	11761299	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	136	0	0	NA	exonic	Ikzf1	synonymous SNV	"Ikzf1:NM_001301866:exon5:c.A409C:p.R137R,Ikzf1:NM_001301865:exon6:c.A532C:p.R178R,Ikzf1:NM_009578:exon6:c.A532C:p.R178R,Ikzf1:NM_001025597:exon7:c.A793C:p.R265R,Ikzf1:NM_001301863:exon7:c.A793C:p.R265R,Ikzf1:NM_001301868:exon7:c.A793C:p.R265R"	11qA1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9421324	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr11	17204529	12A2p6	cell line	sgMsh2	17204529	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	142	0	0	NA	exonic	Pno1	synonymous SNV	Pno1:NM_025443:exon6:c.A651G:p.A217A	11qA2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.09844027	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr11	17209099	12A2p6	cell line	sgMsh2	17209099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	213	0	0	NA	exonic	Pno1	synonymous SNV	Pno1:NM_025443:exon4:c.A468G:p.L156L	11qA2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.8380874	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr11	20094335	12A2p6	cell line	sgMsh2	20094335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	103	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon3:c.C270T:p.D90D,Actr2:NM_001362899:exon4:c.C285T:p.D95D"	11qA3.1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624848752	2	0.7115163	AGT	synonymous	NA	NA	NA	NA
22-2_par	chr11	21559864	12A2p6	cell line	sgMsh2	21559864	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	267	0	0	NA	exonic	Mdh1	synonymous SNV	Mdh1:NM_008618:exon6:c.A510G:p.K170K	11qA3.1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	1.57E-08	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr11	23001391	12A2p6	cell line	sgMsh2	23001391	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	158	0	0	NA	exonic	Cct4	synonymous SNV	Cct4:NM_009837:exon10:c.T1044A:p.I348I	11qA3.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9995214	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr11	23672698	12A2p6	cell line	sgMsh2	23672698	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	129	0	0	NA	exonic	Pus10	nonsynonymous SNV	"Pus10:NM_001033654:exon3:c.T317G:p.V106G,Pus10:NM_028304:exon3:c.T317G:p.V106G,Pus10:NM_028956:exon3:c.T317G:p.V106G"	11qA3.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.7578007	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	30138922	12A2p6	cell line	sgMsh2	30138922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	165	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon13:c.A2300G:p.Q767R,Sptbn1:NM_175836:exon13:c.A2339G:p.Q780R"	11qA3.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.9936694	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	32213099	12A2p6	cell line	sgMsh2	32213099	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	81	0	0	NA	exonic	Rhbdf1	nonsynonymous SNV	"Rhbdf1:NM_001291818:exon9:c.T637C:p.Y213H,Rhbdf1:NM_010117:exon9:c.T1276C:p.Y426H"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.737231621	1	0.9536945	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	32250236	12A2p6	cell line	sgMsh2	32250236	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	119	0	0	NA	exonic	Nprl3	nonsynonymous SNV	"Nprl3:NM_001284360:exon4:c.T76C:p.S26P,Nprl3:NM_181569:exon5:c.T436C:p.S146P,Nprl3:NM_001284359:exon6:c.T475C:p.S159P"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.9434224	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	33266161	12A2p6	cell line	sgMsh2	33266161	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	88	0	0	NA	exonic	Ranbp17	synonymous SNV	"Ranbp17:NM_023146:exon23:c.A2586G:p.V862V,Ranbp17:NM_001362875:exon24:c.A2646G:p.V882V"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.8527767	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr11	34205711	12A2p6	cell line	sgMsh2	34205711	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	101	0	0	NA	exonic	Foxi1	nonsynonymous SNV	Foxi1:NM_023907:exon2:c.G918T:p.M306I	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9906678	CCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	35785409	12A2p6	cell line	sgMsh2	35785409	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	147	0	0	NA	exonic	Pank3	nonsynonymous SNV	Pank3:NM_145962:exon7:c.G1064A:p.G355E	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9931662	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	35797879	12A2p6	cell line	sgMsh2	35797879	A	G	SNV	Mutect2;Vardict	2	0.077	65	0	0	NA	exonic	Fbll1	nonsynonymous SNV	Fbll1:NM_001004147:exon1:c.T556C:p.F186L	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5394345	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	36008195	12A2p6	cell line	sgMsh2	36008195	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.109	75	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.G8042T:p.S2681I,Tenm2:NM_011856:exon29:c.G8135T:p.S2712I"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	2	0.9784177	GCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	36024758	12A2p6	cell line	sgMsh2	36024758	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	221	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon26:c.A5855T:p.N1952I,Tenm2:NM_011856:exon27:c.A5948T:p.N1983I"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624848752	2	0.7784774	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	36049236	12A2p6	cell line	sgMsh2	36049236	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	98	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon21:c.A3966G:p.V1322V,Tenm2:NM_011856:exon22:c.A4059G:p.V1353V"	11qA4	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.7878302	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr11	45933834	12A2p6	cell line	sgMsh2	45933834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	32	0	0	NA	exonic	Lsm11	nonsynonymous SNV	Lsm11:NM_028185:exon4:c.T865C:p.S289P	11qB1.1	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.7333787	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	49134558	12A2p6	cell line	sgMsh2	49134558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	104	0	0	NA	exonic	Olfr56	nonsynonymous SNV	Olfr56:NM_010999:exon1:c.A365G:p.D122G	11qB1.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.836128546	1	0.9997788	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	49645899	12A2p6	cell line	sgMsh2	49645899	A	G	SNV	Mutect2;Vardict	2	0.125	41	0	0	NA	exonic	Flt4	nonsynonymous SNV	Flt4:NM_008029:exon28:c.A3695G:p.N1232S	11qB1.2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.8361792	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	50207165	12A2p6	cell line	sgMsh2	50207165	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	71	0	0	NA	exonic	Sqstm1	nonsynonymous SNV	"Sqstm1:NM_001290769:exon4:c.A668T:p.E223V,Sqstm1:NM_011018:exon4:c.A668T:p.E223V"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9311481	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	52213660	12A2p6	cell line	sgMsh2	52213660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	451	0	0	NA	exonic	Olfr1371	nonsynonymous SNV	Olfr1371:NM_207253:exon1:c.A328G:p.T110A	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.943049	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	53186693	12A2p6	cell line	sgMsh2	53186693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	92	0	0	NA	exonic	Fstl4	nonsynonymous SNV	Fstl4:NM_177059:exon16:c.A2276G:p.D759G	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.507970568	2	0.9921379	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	53578932	12A2p6	cell line	sgMsh2	53578932	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.101	128	0	0	NA	exonic	Kif3a	synonymous SNV	"Kif3a:NM_001290805:exon3:c.C369A:p.I123I,Kif3a:NM_001290806:exon3:c.C369A:p.I123I,Kif3a:NM_008443:exon3:c.C369A:p.I123I"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9946634	TCC	synonymous	NA	NA	NA	NA
22-2_par	chr11	53597978	12A2p6	cell line	sgMsh2	53597978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	309	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon14:c.T1820C:p.V607A,Kif3a:NM_001290806:exon15:c.T1808C:p.V603A,Kif3a:NM_008443:exon15:c.T1829C:p.V610A"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	1.05E-09	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	53997431	12A2p6	cell line	sgMsh2	53997431	C	A	SNV	Mutect2;Vardict	2	0.091	73	0	0	NA	exonic	Slc22a4	nonsynonymous SNV	"Slc22a4:NM_001330304:exon3:c.G242T:p.R81M,Slc22a4:NM_019687:exon4:c.G770T:p.R257M"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.863746	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	58220483	12A2p6	cell line	sgMsh2	58220483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	68	0	0	NA	exonic	Irgm2	synonymous SNV	Irgm2:NM_019440:exon2:c.T999C:p.D333D	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9704672	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr11	58436703	12A2p6	cell line	sgMsh2	58436703	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	exonic	Gm12253	nonsynonymous SNV	Gm12253:NM_001045542:exon5:c.T378G:p.C126W	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	0.9999996	GTC	nonsynonymous	CCTG	9	CCTGCCTGC	NA
22-2_par	chr11	58597504	12A2p6	cell line	sgMsh2	58597504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	44	0	0	NA	exonic	Olfr324	nonsynonymous SNV	Olfr324:NM_001011743:exon1:c.A113C:p.Q38P	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9981245	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	58643064	12A2p6	cell line	sgMsh2	58643064	T	C	SNV	Mutect2;Vardict	2	0.061	109	0	0	NA	exonic	Trim58	nonsynonymous SNV	Trim58:NM_001039047:exon2:c.T443C:p.L148P	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9395415	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	58859567	12A2p6	cell line	sgMsh2	58859567	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	42	0	0	NA	exonic	Gm12258	nonsynonymous SNV	"Gm12258:NM_001372581:exon5:c.T1567C:p.F523L,Gm12258:NM_001372582:exon6:c.T1459C:p.F487L"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.813651972	1	0.9336232	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	59067124	12A2p6	cell line	sgMsh2	59067124	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	129	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon39:c.T10749A:p.A3583A,Obscn:NM_199152:exon41:c.T11376A:p.A3792A"	11qB1.3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9186077	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr11	60409606	12A2p6	cell line	sgMsh2	60409606	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	230	0	0	NA	exonic	Atpaf2	nonsynonymous SNV	Atpaf2:NM_145427:exon2:c.T185G:p.V62G	11qB2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	2	0.9999945	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	60801506	12A2p6	cell line	sgMsh2	60801506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	71	0	0	NA	exonic	Shmt1	synonymous SNV	Shmt1:NM_009171:exon5:c.C423T:p.G141G	11qB2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.570904975	2	0.9172049	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr11	61745006	12A2p6	cell line	sgMsh2	61745006	A	C	SNV	Mutect2;Vardict	2	0.077	66	0	0	NA	exonic	Prpsap2	nonsynonymous SNV	"Prpsap2:NM_001164244:exon5:c.T209G:p.F70C,Prpsap2:NM_001164242:exon6:c.T467G:p.F156C,Prpsap2:NM_001164243:exon6:c.T209G:p.F70C,Prpsap2:NM_001364088:exon6:c.T230G:p.F77C,Prpsap2:NM_001364087:exon7:c.T467G:p.F156C,Prpsap2:NM_001364090:exon7:c.T209G:p.F70C,Prpsap2:NM_144806:exon7:c.T467G:p.F156C,Prpsap2:NM_001364086:exon8:c.T467G:p.F156C"	11qB2	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	9.97E-05	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	67207583	12A2p6	cell line	sgMsh2	67207583	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	264	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon15:c.T1580G:p.I527S	11qB3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.999997	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	67250341	12A2p6	cell line	sgMsh2	67250341	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.212	147	0	0	NA	exonic	Myh4	frameshift insertion	Myh4:NM_010855:exon20:c.2229dupG:p.K744Efs*3	11qB3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.95300673	NA	NA	AAG	frameshift	NA	NA	NA	1
22-2_par	chr11	67250359	12A2p6	cell line	sgMsh2	67250359	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	168	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon20:c.T2246G:p.L749R	11qB3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.804661343	1	0.9999919	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	67254828	12A2p6	cell line	sgMsh2	67254828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	135	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon30:c.A4136G:p.Y1379C	11qB3	chr11-3355458-69578588	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.896101	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	70226527	12A2p6	cell line	sgMsh2	70226527	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	134	0	0	NA	exonic	Bcl6b	nonsynonymous SNV	Bcl6b:NM_007528:exon8:c.A1268G:p.K423R	11qB3	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9982116	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	71771895	12A2p6	cell line	sgMsh2	71771895	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	197	0	0	NA	exonic	Wscd1	nonsynonymous SNV	"Wscd1:NM_001357960:exon5:c.A761C:p.N254T,Wscd1:NM_001357965:exon5:c.A761C:p.N254T,Wscd1:NM_177618:exon5:c.A761C:p.N254T"	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.170821961	3	0.9999967	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	72888293	12A2p6	cell line	sgMsh2	72888293	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	88	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon35:c.A5579G:p.K1860R	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.85860512	1	0.9996178	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	73222848	12A2p6	cell line	sgMsh2	73222848	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	69	0	0	NA	exonic	Shpk	synonymous SNV	Shpk:NM_029031:exon7:c.C1086T:p.T362T	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.5744649	CCC	synonymous	NA	NA	NA	NA
22-2_par	chr11	73453972	12A2p6	cell line	sgMsh2	73453972	T	C	SNV	Mutect2;MuSe;Vardict	3	0.083	563	0	0	NA	exonic	Olfr380	nonsynonymous SNV	Olfr380:NM_147025:exon1:c.A239G:p.K80R	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.9964332	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	73798830	12A2p6	cell line	sgMsh2	73798830	T	G	SNV	Mutect2;Strelka2	2	0.075	135	0	0	NA	exonic	Olfr391	nonsynonymous SNV	Olfr391:NM_001159775:exon2:c.A926C:p.K309T	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5760981	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	73798833	12A2p6	cell line	sgMsh2	73798833	T	A	SNV	Mutect2;Strelka2	2	0.073	137	0	0	NA	exonic	Olfr391	nonsynonymous SNV	Olfr391:NM_001159775:exon2:c.A923T:p.K308M	11qB4	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6831026	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	74206672	12A2p6	cell line	sgMsh2	74206672	A	G	SNV	Mutect2;Vardict	2	0.039	253	0	0	NA	exonic	Olfr43	synonymous SNV	Olfr43:NM_146711:exon1:c.T543C:p.I181I	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999999	TAA	synonymous	NA	NA	NA	NA
22-2_par	chr11	74663381	12A2p6	cell line	sgMsh2	74663381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	31	0	0	NA	exonic	Cluh	nonsynonymous SNV	"Cluh:NM_001081158:exon11:c.T1963C:p.Y655H,Cluh:NM_001368711:exon12:c.T1849C:p.Y617H"	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9858883	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	74946108	12A2p6	cell line	sgMsh2	74946108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	88	0	0	NA	exonic	Smg6	synonymous SNV	Smg6:NM_001002764:exon8:c.T2547C:p.T849T	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	8.64E-05	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr11	76672655	12A2p6	cell line	sgMsh2	76672655	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	19	0	0	NA	exonic	Bhlha9	nonsynonymous SNV	Bhlha9:NM_177182:exon1:c.T107A:p.V36E	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.914083	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	77102806	12A2p6	cell line	sgMsh2	77102806	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	153	0	0	NA	exonic	Efcab5	nonsynonymous SNV	Efcab5:NM_176965:exon17:c.A4015G:p.S1339G	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.990826	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	77473077	12A2p6	cell line	sgMsh2	77473077	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	32	0	0	NA	exonic	Ankrd13b	nonsynonymous SNV	"Ankrd13b:NM_001373882:exon11:c.G1192A:p.A398T,Ankrd13b:NM_001373883:exon11:c.G1192A:p.A398T,Ankrd13b:NM_172945:exon11:c.G1192A:p.A398T"	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.987905	GCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	77969016	12A2p6	cell line	sgMsh2	77969016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	46	0	0	NA	exonic	Sez6	nonsynonymous SNV	"Sez6:NM_001291225:exon5:c.A1160G:p.K387R,Sez6:NM_021286:exon5:c.A1160G:p.K387R"	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.728240992	1	0.7832337	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	80015197	12A2p6	cell line	sgMsh2	80015197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	0	0	NA	exonic	Suz12	nonsynonymous SNV	"Suz12:NM_001163018:exon7:c.A815G:p.K272R,Suz12:NM_199196:exon8:c.A884G:p.K295R"	11qB5	chr11-69590981-82929860	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9999696	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	84167329	12A2p6	cell line	sgMsh2	84167329	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	358	0	0	NA	exonic	Gm11437	nonsynonymous SNV	Gm11437:NM_001037932:exon1:c.A56G:p.N19S	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	1.18E-09	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	84519887	12A2p6	cell line	sgMsh2	84519887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	58	0	0	NA	exonic	Lhx1	nonsynonymous SNV	Lhx1:NM_008498:exon5:c.T883C:p.F295L	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.96199736	1	0.9994625	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	85326934	12A2p6	cell line	sgMsh2	85326934	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	198	0	0	NA	exonic	Ppm1d	synonymous SNV	Ppm1d:NM_016910:exon2:c.G522A:p.R174R	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.9999916	GGG	synonymous	NA	NA	NA	NA
22-2_par	chr11	86329308	12A2p6	cell line	sgMsh2	86329308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	59	0	0	NA	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon6:c.T869C:p.I290T	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.809156658	1	0.9790092	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	87129739	12A2p6	cell line	sgMsh2	87129739	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	143	0	0	NA	exonic	Trim37	nonsynonymous SNV	Trim37:NM_001363026:exon2:c.T41C:p.V14A	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	9.54E-08	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	87737628	12A2p6	cell line	sgMsh2	87737628	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	128	0	0	NA	exonic	Supt4a	nonsynonymous SNV	Supt4a:NM_009296:exon1:c.T29C:p.L10P	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.9543455	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	89392338	12A2p6	cell line	sgMsh2	89392338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	47	0	0	NA	exonic	Ankfn1	nonsynonymous SNV	"Ankfn1:NM_172534:exon4:c.A482G:p.D161G,Ankfn1:NM_001327810:exon20:c.A2729G:p.D910G"	11qC	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.656315956	2	0.5257279	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	91577343	12A2p6	cell line	sgMsh2	91577343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	99	0	0	NA	exonic	Kif2b	nonsynonymous SNV	Kif2b:NM_028547:exon1:c.A113G:p.D38G	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.9880473	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	97337588	12A2p6	cell line	sgMsh2	97337588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	85	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon12:c.A3740G:p.E1247G	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.633839382	2	6.54E-05	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	97491196	12A2p6	cell line	sgMsh2	97491196	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	0	0	NA	exonic	Arhgap23	synonymous SNV	Arhgap23:NM_021493:exon17:c.T2751A:p.I917I	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9847235	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr11	99145285	12A2p6	cell line	sgMsh2	99145285	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	132	0	0	NA	exonic	Ccr7	synonymous SNV	"Ccr7:NM_001301713:exon2:c.A621G:p.V207V,Ccr7:NM_007719:exon3:c.A810G:p.V270V"	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9728265	CTA	synonymous	ACC	8	ACCACCAC	NA
22-2_par	chr11	101044538	12A2p6	cell line	sgMsh2	101044538	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	244	0	0	NA	exonic	Atp6v0a1	nonsynonymous SNV	"Atp6v0a1:NM_001243049:exon16:c.T1745G:p.I582S,Atp6v0a1:NM_001362639:exon16:c.T1742G:p.I581S,Atp6v0a1:NM_001243050:exon17:c.T1922G:p.I641S,Atp6v0a1:NM_001243051:exon17:c.T1943G:p.I648S,Atp6v0a1:NM_001362636:exon17:c.T1922G:p.I641S,Atp6v0a1:NM_001362637:exon17:c.T1943G:p.I648S,Atp6v0a1:NM_001362638:exon17:c.T1922G:p.I641S,Atp6v0a1:NM_001362640:exon17:c.T1922G:p.I641S,Atp6v0a1:NM_016920:exon17:c.T1922G:p.I641S"	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.6266448	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	101055108	12A2p6	cell line	sgMsh2	101055108	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	118	0	0	NA	exonic	Atp6v0a1	nonsynonymous SNV	"Atp6v0a1:NM_001243049:exon19:c.A2039G:p.Y680C,Atp6v0a1:NM_001243050:exon19:c.A2198G:p.Y733C,Atp6v0a1:NM_001243051:exon19:c.A2219G:p.Y740C,Atp6v0a1:NM_001362639:exon19:c.A2036G:p.Y679C,Atp6v0a1:NM_001362637:exon20:c.A2237G:p.Y746C,Atp6v0a1:NM_001362638:exon20:c.A2216G:p.Y739C,Atp6v0a1:NM_016920:exon20:c.A2216G:p.Y739C,Atp6v0a1:NM_001362636:exon21:c.A2291G:p.Y764C"	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.805288	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	101319982	12A2p6	cell line	sgMsh2	101319982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	152	0	0	NA	exonic	Psme3	synonymous SNV	Psme3:NM_011192:exon6:c.A363G:p.K121K	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.696773789	1	0.973098	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr11	101443630	12A2p6	cell line	sgMsh2	101443630	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	82	0	0	NA	exonic	Rpl27	nonsynonymous SNV	Rpl27:NM_011289:exon3:c.T211G:p.F71V	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.9948271	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	102199451	12A2p6	cell line	sgMsh2	102199451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	57	0	0	NA	exonic	Hdac5	nonsynonymous SNV	"Hdac5:NM_001077696:exon18:c.A2357G:p.N786S,Hdac5:NM_001284250:exon18:c.A2354G:p.N785S,Hdac5:NM_010412:exon18:c.A2354G:p.N785S,Hdac5:NM_001284249:exon19:c.A2231G:p.N744S,Hdac5:NM_001361596:exon19:c.A2231G:p.N744S,Hdac5:NM_001284248:exon20:c.A2411G:p.N804S"	11qD	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	1	0.9884907	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	103542926	12A2p6	cell line	sgMsh2	103542926	A	G	SNV	Mutect2;Vardict	2	0.079	120	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.T2888C:p.M963T	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6323518	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	103542951	12A2p6	cell line	sgMsh2	103542951	T	G	SNV	Mutect2;MuSe;Vardict	3	0.096	106	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.A2863C:p.K955Q	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.970231	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	104623468	12A2p6	cell line	sgMsh2	104623468	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	80	0	0	NA	exonic	Itgb3	nonsynonymous SNV	Itgb3:NM_016780:exon2:c.G134T:p.S45I	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.8512647	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	106322789	12A2p6	cell line	sgMsh2	106322789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	59	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon22:c.A3998G:p.Q1333R	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.813651972	1	0.9812011	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	106380874	12A2p6	cell line	sgMsh2	106380874	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	102	0	0	NA	exonic	Icam2	nonsynonymous SNV	Icam2:NM_010494:exon2:c.T121G:p.S41A	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7619513	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	107168322	12A2p6	cell line	sgMsh2	107168322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	91	0	0	NA	exonic	Nol11	nonsynonymous SNV	"Nol11:NM_001363078:exon15:c.A1808G:p.K603R,Nol11:NM_001161329:exon17:c.A1955G:p.K652R,Nol11:NM_133702:exon17:c.A2015G:p.K672R"	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9856206	TTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr11	107735117	12A2p6	cell line	sgMsh2	107735117	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.247	14	0	0	NA	exonic	Cacng4	nonsynonymous SNV	Cacng4:NM_019431:exon4:c.A647T:p.K216M	11qE1	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.8269193	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	115791846	12A2p6	cell line	sgMsh2	115791846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	68	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1708C:p.S570P	11qE2	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.705764418	1	0.8229392	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	116545433	12A2p6	cell line	sgMsh2	116545433	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	111	0	0	NA	exonic	Ube2o	nonsynonymous SNV	Ube2o:NM_173755:exon7:c.T881C:p.V294A	11qE2	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9716099	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	116599021	12A2p6	cell line	sgMsh2	116599021	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	63	0	0	NA	exonic	Rhbdf2	stoploss	"Rhbdf2:NM_001167680:exon19:c.T2482A:p.X828K,Rhbdf2:NM_172572:exon19:c.T2482A:p.X828K"	11qE2	chr11-83185009-116740143	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5653357	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	117832567	12A2p6	cell line	sgMsh2	117832567	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	124	0	0	NA	exonic	Afmid	nonsynonymous SNV	"Afmid:NM_001363158:exon2:c.A311T:p.Q104L,Afmid:NM_001363159:exon4:c.A293T:p.Q98L,Afmid:NM_001363160:exon4:c.A293T:p.Q98L,Afmid:NM_027827:exon4:c.A293T:p.Q98L"	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8712222	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	118096432	12A2p6	cell line	sgMsh2	118096432	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	61	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon26:c.A4051G:p.I1351V	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9322675	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	118114203	12A2p6	cell line	sgMsh2	118114203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	125	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon15:c.A2354G:p.N785S	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.476503365	2	0.99773	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	118272239	12A2p6	cell line	sgMsh2	118272239	G	T	SNV	Mutect2;Vardict	2	0.173	29	0	0	NA	exonic	Usp36	nonsynonymous SNV	Usp36:NM_001033528:exon13:c.C1297A:p.P433T	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.7669655	GGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	120137905	12A2p6	cell line	sgMsh2	120137905	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	95	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon5:c.G332C:p.G111A,Slc38a10:NM_001361698:exon5:c.G314C:p.G105A,Slc38a10:NM_001164798:exon6:c.G578C:p.G193A,Slc38a10:NM_001164799:exon6:c.G578C:p.G193A,Slc38a10:NM_001164800:exon6:c.G578C:p.G193A,Slc38a10:NM_001164801:exon6:c.G578C:p.G193A,Slc38a10:NM_001164802:exon6:c.G578C:p.G193A,Slc38a10:NM_001361696:exon6:c.G578C:p.G193A,Slc38a10:NM_024249:exon6:c.G578C:p.G193A"	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.8849317	ACC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	120271752	12A2p6	cell line	sgMsh2	120271752	T	C	SNV	Mutect2;Vardict	2	0.136	30	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.T875C:p.M292T	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.680226	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	120729813	12A2p6	cell line	sgMsh2	120729813	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	87	0	0	NA	exonic	Cbr2	nonsynonymous SNV	Cbr2:NM_007621:exon8:c.T644A:p.V215D	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.822642602	1	0.998415	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	120783945	12A2p6	cell line	sgMsh2	120783945	C	A	SNV	Mutect2;Vardict	2	0.158	27	0	0	NA	exonic	Rfng	nonsynonymous SNV	Rfng:NM_009053:exon1:c.G218T:p.G73V	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.710259733	1	0.009478363	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr11	121459474	12A2p6	cell line	sgMsh2	121459474	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	100	0	0	NA	exonic	Tbcd	synonymous SNV	Tbcd:NM_029878:exon3:c.T309C:p.F103F	11qE2	chr11-116740144-121956668	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5781733	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr12	4274785	12A2p6	cell line	sgMsh2	4274785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	50	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon16:c.G3128A:p.G1043D	12qA1.1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9992643	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	8985687	12A2p6	cell line	sgMsh2	8985687	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	132	0	0	NA	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon7:c.T629A:p.I210N,Wdr35:NM_172470:exon7:c.T629A:p.I210N"	12qA1.1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9974893	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	10375540	12A2p6	cell line	sgMsh2	10375540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	117	0	0	NA	exonic	Nt5c1b	nonsynonymous SNV	"Nt5c1b:NM_001310582:exon5:c.A854G:p.N285S,Nt5c1b:NM_001373974:exon5:c.A902G:p.N301S,Nt5c1b:NM_001373975:exon5:c.A860G:p.N287S,Nt5c1b:NM_027588:exon5:c.A908G:p.N303S,Nt5c1b:NM_001373971:exon6:c.A1082G:p.N361S,Nt5c1b:NM_001373972:exon6:c.A1076G:p.N359S,Nt5c1b:NM_001373973:exon6:c.A1034G:p.N345S"	12qA1.1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9917546	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	33433555	12A2p6	cell line	sgMsh2	33433555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	177	0	0	NA	exonic	Twistnb	nonsynonymous SNV	Twistnb:NM_172253:exon2:c.T305C:p.L102P	12qA3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.687783159	1	0.9734291	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	40725790	12A2p6	cell line	sgMsh2	40725790	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	110	0	0	NA	exonic	Dock4	nonsynonymous SNV	Dock4:NM_172803:exon17:c.A1731C:p.K577N	12qB1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	8.49E-07	AAC	nonsynonymous	ACTC	9	ACTCACTCA	NA
22-2_par	chr12	41452534	12A2p6	cell line	sgMsh2	41452534	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	171	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1783G:p.I595V,Lrrn3:NM_010733:exon2:c.A1783G:p.I595V,Lrrn3:NM_001271708:exon3:c.A1783G:p.I595V"	12qB1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9908669	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	44568642	12A2p6	cell line	sgMsh2	44568642	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	150	0	0	NA	exonic	Nrcam	nonsynonymous SNV	"Nrcam:NM_001146031:exon18:c.A1984G:p.T662A,Nrcam:NM_176930:exon19:c.A2014G:p.T672A"	12qB2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9871097	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	51400069	12A2p6	cell line	sgMsh2	51400069	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	190	0	0	NA	exonic	Scfd1	nonsynonymous SNV	"Scfd1:NM_001306178:exon10:c.A817C:p.T273P,Scfd1:NM_029825:exon10:c.A817C:p.T273P"	12qB3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	3	0.9999985	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	51652698	12A2p6	cell line	sgMsh2	51652698	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	284	0	0	NA	exonic	Strn3	synonymous SNV	"Strn3:NM_001172098:exon5:c.T690C:p.P230P,Strn3:NM_001364437:exon5:c.T690C:p.P230P,Strn3:NM_052973:exon5:c.T690C:p.P230P"	12qB3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9999888	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr12	57729477	12A2p6	cell line	sgMsh2	57729477	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	199	0	0	NA	exonic	Ttc6	nonsynonymous SNV	Ttc6:NM_001312644:exon30:c.T5206G:p.S1736A	12qC1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9999847	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	58212868	12A2p6	cell line	sgMsh2	58212868	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	140	0	0	NA	exonic	Sstr1	synonymous SNV	Sstr1:NM_009216:exon2:c.T276C:p.A92A	12qC1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9994572	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr12	59014035	12A2p6	cell line	sgMsh2	59014035	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	189	0	0	NA	exonic	Gemin2	nonsynonymous SNV	Gemin2:NM_025656:exon2:c.A203G:p.K68R	12qC1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9999497	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	66550575	12A2p6	cell line	sgMsh2	66550575	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	121	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon10:c.A1937G:p.N646S,Mdga2:NM_207010:exon10:c.A1937G:p.N646S"	12qC2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9886666	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	69598891	12A2p6	cell line	sgMsh2	69598891	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	124	0	0	NA	exonic	Sos2	synonymous SNV	Sos2:NM_001135559:exon17:c.A2670G:p.A890A	12qC2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.7242497	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr12	72223436	12A2p6	cell line	sgMsh2	72223436	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	62	0	0	NA	exonic	Rtn1	synonymous SNV	"Rtn1:NM_001007596:exon2:c.C165T:p.V55V,Rtn1:NM_001286448:exon2:c.C345T:p.V115V,Rtn1:NM_153457:exon4:c.C1881T:p.V627V"	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.9515669	CGA	synonymous	NA	NA	NA	NA
22-2_par	chr12	72892881	12A2p6	cell line	sgMsh2	72892881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	36	0	0	NA	exonic	4930447C04Rik	frameshift deletion	4930447C04Rik:NM_029444:exon15:c.1254delT:p.L419fs*0	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	NA	NA	GAA	frameshift	NA	NA	NA	-1
22-2_par	chr12	72910014	12A2p6	cell line	sgMsh2	72910014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	11	0	0	NA	exonic	4930447C04Rik	nonsynonymous SNV	4930447C04Rik:NM_029444:exon6:c.T401C:p.F134S	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.7438779	AAA	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr12	73545723	12A2p6	cell line	sgMsh2	73545723	A	T	SNV	Mutect2;Vardict	2	0.175	22	0	0	NA	exonic	Tmem30b	nonsynonymous SNV	Tmem30b:NM_178715:exon1:c.T617A:p.F206Y	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	1	0.007040554	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	73967953	12A2p6	cell line	sgMsh2	73967953	T	C	SNV	Mutect2;Vardict	2	0.055	100	0	0	NA	exonic	Snapc1	synonymous SNV	Snapc1:NM_178392:exon2:c.T231C:p.A77A	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9706025	CTT	synonymous	AGCTTT	12	AGCTTTAGCTTT	NA
22-2_par	chr12	75945171	12A2p6	cell line	sgMsh2	75945171	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	135	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon40:c.T5906C:p.F1969S	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	0.5207408	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	76167453	12A2p6	cell line	sgMsh2	76167453	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	145	0	0	NA	exonic	Esr2	nonsynonymous SNV	"Esr2:NM_010157:exon2:c.T223C:p.Y75H,Esr2:NM_207707:exon2:c.T223C:p.Y75H"	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9850484	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	79165064	12A2p6	cell line	sgMsh2	79165064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	146	0	0	NA	exonic	Vti1b	nonsynonymous SNV	"Vti1b:NM_001364374:exon2:c.T67C:p.Y23H,Vti1b:NM_016800:exon3:c.T250C:p.Y84H"	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.928107	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	80491134	12A2p6	cell line	sgMsh2	80491134	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	61	0	0	NA	exonic	Exd2	nonsynonymous SNV	Exd2:NM_133798:exon7:c.T1283G:p.F428C	12qC3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9188944	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	83533988	12A2p6	cell line	sgMsh2	83533988	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	68	0	0	NA	exonic	Dcaf4	nonsynonymous SNV	"Dcaf4:NM_001165256:exon6:c.A695G:p.N232S,Dcaf4:NM_030246:exon7:c.A656G:p.N219S"	12qD1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.6778873	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	83951357	12A2p6	cell line	sgMsh2	83951357	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	31	0	0	NA	exonic	Riox1	nonsynonymous SNV	Riox1:NM_023633:exon1:c.G666T:p.Q222H	12qD1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.7231807	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	84017290	12A2p6	cell line	sgMsh2	84017290	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	0	0	NA	exonic	Acot1	nonsynonymous SNV	Acot1:NM_012006:exon3:c.A1171T:p.M391L	12qD1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	84773885	12A2p6	cell line	sgMsh2	84773885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	55	0	0	NA	exonic	Isca2	synonymous SNV	Isca2:NM_028863:exon3:c.T267C:p.D89D	12qD1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	1	0.000691213	ATA	synonymous	NA	NA	NA	NA
22-2_par	chr12	84920578	12A2p6	cell line	sgMsh2	84920578	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.099	43	0	0	NA	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon19:c.T2372G:p.F791C,Arel1:NM_001364189:exon20:c.T2372G:p.F791C,Arel1:NM_178065:exon20:c.T2372G:p.F791C"	12qD1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.8366671	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	85819566	12A2p6	cell line	sgMsh2	85819566	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	87	0	0	NA	exonic	Erg28	nonsynonymous SNV	"Erg28:NM_001360451:exon3:c.A137T:p.N46I,Erg28:NM_001360813:exon3:c.A137T:p.N46I,Erg28:NM_021446:exon3:c.A137T:p.N46I"	12qD2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.734565	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	87118005	12A2p6	cell line	sgMsh2	87118005	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	83	0	0	NA	exonic	Pomt2	nonsynonymous SNV	Pomt2:NM_153415:exon13:c.G1628A:p.R543Q	12qD2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.985959	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	90332327	12A2p6	cell line	sgMsh2	90332327	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	36	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_001252074:exon7:c.G1621T:p.G541C,Nrxn3:NM_001198587:exon20:c.G4633T:p.G1545C,Nrxn3:NM_172544:exon20:c.G3220T:p.G1074C"	12qD3	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.7519652	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	98490019	12A2p6	cell line	sgMsh2	98490019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	43	0	0	NA	exonic	Kcnk10	synonymous SNV	"Kcnk10:NM_001316664:exon4:c.T501C:p.C167C,Kcnk10:NM_001316665:exon4:c.T552C:p.C184C,Kcnk10:NM_001316666:exon4:c.T552C:p.C184C,Kcnk10:NM_029911:exon4:c.T543C:p.C181C"	12qE	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	1	0.909757	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr12	98964560	12A2p6	cell line	sgMsh2	98964560	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	210	0	0	NA	exonic	Ttc8	nonsynonymous SNV	"Ttc8:NM_001364378:exon9:c.T460G:p.F154V,Ttc8:NM_029553:exon9:c.T832G:p.F278V,Ttc8:NM_198311:exon10:c.T862G:p.F288V"	12qE	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.9905004	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	100112374	12A2p6	cell line	sgMsh2	100112374	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	179	0	0	NA	exonic	Psmc1	nonsynonymous SNV	Psmc1:NM_008947:exon1:c.A44T:p.K15M	12qE	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.999992	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	102497450	12A2p6	cell line	sgMsh2	102497450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	156	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon13:c.T2113C:p.L705L,Golga5:NM_013747:exon13:c.T2113C:p.L705L"	12qE	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.9516525	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr12	103579025	12A2p6	cell line	sgMsh2	103579025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	135	0	0	NA	exonic	Ppp4r4	nonsynonymous SNV	Ppp4r4:NM_028980:exon6:c.T556C:p.S186P	12qE	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.7267252	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	108866101	12A2p6	cell line	sgMsh2	108866101	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	77	0	0	NA	exonic	Wars	nonsynonymous SNV	"Wars:NM_001164314:exon8:c.C1037T:p.A346V,Wars:NM_001164488:exon8:c.C1037T:p.A346V,Wars:NM_011710:exon8:c.C1037T:p.A346V"	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.955206	GGC	nonsynonymous	GCAGG	11	GCAGGGCAGGG	NA
22-2_par	chr12	111540187	12A2p6	cell line	sgMsh2	111540187	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	261	0	0	NA	exonic	Eif5	nonsynonymous SNV	"Eif5:NM_173363:exon5:c.A212T:p.N71I,Eif5:NM_178041:exon5:c.A212T:p.N71I"	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.9999927	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	111833268	12A2p6	cell line	sgMsh2	111833268	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	117	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon12:c.A2443G:p.T815A	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9891109	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	112063565	12A2p6	cell line	sgMsh2	112063565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	173	0	0	NA	exonic	Tdrd9	nonsynonymous SNV	Tdrd9:NM_029056:exon34:c.T3923C:p.L1308P	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.9999591	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	112911811	12A2p6	cell line	sgMsh2	112911811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	18	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon22:c.A2601G:p.I867M	12qF1	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.997959878	1	0.09951304	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	116426604	12A2p6	cell line	sgMsh2	116426604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	81	0	0	NA	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon13:c.T1172C:p.V391A	12qF2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999942	GTT	nonsynonymous	GTTC	8	GTTCGTTC	NA
22-2_par	chr12	117581729	12A2p6	cell line	sgMsh2	117581729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	90	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon4:c.T410C:p.L137P,Rapgef5:NM_175930:exon6:c.T215C:p.L72P"	12qF2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.9517177	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	117922074	12A2p6	cell line	sgMsh2	117922074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	162	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon69:c.A11228G:p.Y3743C	12qF2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.9437024	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr12	118849626	12A2p6	cell line	sgMsh2	118849626	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	31	0	0	NA	exonic	Sp8	synonymous SNV	"Sp8:NM_001379379:exon2:c.G1269A:p.R423R,Sp8:NM_001379380:exon2:c.G1215A:p.R405R,Sp8:NM_177082:exon3:c.G1215A:p.R405R"	12qF2	chr12-3501831-119465464	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.665306585	2	0.5322872	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr12	120011284	12A2p6	cell line	sgMsh2	120011284	A	-	Deletion	Strelka2;Vardict	2	0.0969	258	0	0	NA	exonic	Tmem196	frameshift deletion	"Tmem196:NM_001160385:exon2:c.184delA:p.K64Sfs*5,Tmem196:NM_001294146:exon2:c.202delA:p.K70Sfs*5,Tmem196:NM_001294154:exon2:c.184delA:p.K64Sfs*5,Tmem196:NM_001379146:exon2:c.202delA:p.K70Sfs*5"	12qF2	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
22-2_par	chr13	4142201	12A2p6	cell line	sgMsh2	4142201	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	195	0	0	NA	exonic	Akr1c18	nonsynonymous SNV	"Akr1c18:NM_001346535:exon4:c.T418C:p.S140P,Akr1c18:NM_134066:exon5:c.T496C:p.S166P"	13qA1	chr13-3556297-12579526	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999947	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	6605073	12A2p6	cell line	sgMsh2	6605073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	58	0	0	NA	exonic	Pfkp	synonymous SNV	"Pfkp:NM_001291071:exon10:c.T969C:p.R323R,Pfkp:NM_019703:exon10:c.T969C:p.R323R"	13qA1	chr13-3556297-12579526	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.997959878	1	0.9997781	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr13	8697782	12A2p6	cell line	sgMsh2	8697782	A	G	SNV	Mutect2;Vardict	2	0.067	71	0	0	NA	exonic	Adarb2	nonsynonymous SNV	"Adarb2:NM_001289530:exon5:c.A1373G:p.H458R,Adarb2:NM_052977:exon5:c.A1373G:p.H458R"	13qA1	chr13-3556297-12579526	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.7349737	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	12438599	12A2p6	cell line	sgMsh2	12438599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	56	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon45:c.A6354G:p.E2118E	13qA1	chr13-3556297-12579526	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.939520786	1	0.9987878	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr13	15726089	12A2p6	cell line	sgMsh2	15726089	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	83	0	0	NA	exonic	Gli3	nonsynonymous SNV	Gli3:NM_008130:exon15:c.A4060G:p.T1354A	13qA1	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.8988907	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	21133145	12A2p6	cell line	sgMsh2	21133145	C	T	SNV	Mutect2;Vardict	2	0.031	280	0	0	NA	exonic	Olfr263	synonymous SNV	Olfr263:NM_010984:exon1:c.C369T:p.F123F	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.139354758	3	1.59E-09	TCA	synonymous	NA	NA	NA	NA
22-2_par	chr13	21133629	12A2p6	cell line	sgMsh2	21133629	C	T	SNV	Mutect2;Vardict	2	0.041	163	0	0	NA	exonic	Olfr263	nonsynonymous SNV	Olfr263:NM_010984:exon1:c.C853T:p.L285F	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.9999318	TCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	21142853	12A2p6	cell line	sgMsh2	21142853	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	124	0	0	NA	exonic	Olfr1368	nonsynonymous SNV	Olfr1368:NM_146534:exon1:c.T203A:p.F68Y	13qA2	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9261093	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	21525300	12A2p6	cell line	sgMsh2	21525300	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	90	0	0	NA	exonic	Zkscan8	nonsynonymous SNV	"Zkscan8:NM_001251833:exon3:c.A427T:p.T143S,Zkscan8:NM_139141:exon3:c.A427T:p.T143S"	13qA3.1	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.8572436	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	22042624	12A2p6	cell line	sgMsh2	22042624	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	106	0	0	NA	exonic	H2ac11	nonsynonymous SNV	H2ac11:NM_178186:exon1:c.A304C:p.T102P	13qA3.1	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	1	0.999848	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	22043395	12A2p6	cell line	sgMsh2	22043395	T	C	SNV	Mutect2;Vardict	2	0.067	144	0	0	NA	exonic	H2bc11	nonsynonymous SNV	H2bc11:NM_178198:exon1:c.T166C:p.S56P	13qA3.1	chr13-12791714-23488184	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.09549376	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	24862706	12A2p6	cell line	sgMsh2	24862706	A	-	Deletion	Strelka2;Vardict	2	0.0667	75	0	0	NA	exonic	D130043K22Rik	frameshift deletion	D130043K22Rik:NM_001081051:exon5:c.1090delA:p.K364Rfs*19	13qA3.1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.299837495	NA	NA	GAA	frameshift	NA	NA	NA	-1
22-2_par	chr13	25102535	12A2p6	cell line	sgMsh2	25102535	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	110	0	0	NA	exonic	Dcdc2a	nonsynonymous SNV	"Dcdc2a:NM_001195617:exon4:c.G440A:p.G147E,Dcdc2a:NM_177577:exon4:c.G440A:p.G147E"	13qA3.1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5541935	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	27098617	12A2p6	cell line	sgMsh2	27098617	T	C	SNV	Mutect2;MuSe;Vardict	3	0.077	186	0	0	NA	exonic	Prl3d1	nonsynonymous SNV	"Prl3d1:NM_001205322:exon4:c.T340C:p.W114R,Prl3d1:NM_008864:exon4:c.T337C:p.W113R"	13qA3.1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5319471	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	30757665	12A2p6	cell line	sgMsh2	30757665	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	94	0	0	NA	exonic	Irf4	nonsynonymous SNV	"Irf4:NM_001347508:exon7:c.T1000C:p.Y334H,Irf4:NM_013674:exon7:c.T1003C:p.Y335H"	13qA3.2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8032968	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	33327326	12A2p6	cell line	sgMsh2	33327326	A	C	SNV	Mutect2;Vardict	2	0.029	222	0	0	NA	exonic	Serpinb9f	nonsynonymous SNV	Serpinb9f:NM_183197:exon3:c.A249C:p.Q83H	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.130364128	3	2.50E-08	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	37930954	12A2p6	cell line	sgMsh2	37930954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	50	0	0	NA	exonic	Rreb1	nonsynonymous SNV	"Rreb1:NM_001177869:exon9:c.A2288G:p.Y763C,Rreb1:NM_001039188:exon10:c.A2288G:p.Y763C,Rreb1:NM_001177868:exon10:c.A2288G:p.Y763C,Rreb1:NM_026830:exon10:c.A2288G:p.Y763C"	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.9240001	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	41051442	12A2p6	cell line	sgMsh2	41051442	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	126	0	0	NA	exonic	Mak	nonsynonymous SNV	"Mak:NM_001145802:exon5:c.A326G:p.K109R,Mak:NM_008547:exon5:c.A419G:p.K140R,Mak:NM_001145803:exon6:c.A419G:p.K140R"	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.8502564	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	41316408	12A2p6	cell line	sgMsh2	41316408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	133	0	0	NA	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.T1268C:p.V423A,Nedd9:NM_001111324:exon6:c.T1268C:p.V423A"	13qA3.3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9989238	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	42157288	12A2p6	cell line	sgMsh2	42157288	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	31	0	0	NA	exonic	Hivep1	synonymous SNV	Hivep1:NM_007772:exon4:c.A3003G:p.Q1001Q	13qA4	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9858883	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr13	42158303	12A2p6	cell line	sgMsh2	42158303	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	96	0	0	NA	exonic	Hivep1	nonsynonymous SNV	Hivep1:NM_007772:exon4:c.A4018T:p.S1340C	13qA4	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9817761	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	43544548	12A2p6	cell line	sgMsh2	43544548	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	121	0	0	NA	exonic	Mcur1	nonsynonymous SNV	Mcur1:NM_001081059:exon8:c.T875C:p.L292P	13qA4	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.585362	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	49618223	12A2p6	cell line	sgMsh2	49618223	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	77	0	0	NA	exonic	Ogn	synonymous SNV	Ogn:NM_008760:exon5:c.T558C:p.P186P	13qA5	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	7.11E-06	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr13	53351688	12A2p6	cell line	sgMsh2	53351689	AT	CC	DBS	Mutect2;Vardict	2	0.068	93	0	0	NA	exonic	Sptlc1	nonframeshift substitution	Sptlc1:NM_009269:exon8:c.692_693GG:p.N231R	13qB1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	56074231	12A2p6	cell line	sgMsh2	56074231	T	G	SNV	Mutect2;Vardict	2	0.081	44	0	0	NA	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon9:c.A1112C:p.N371T,Macroh2a1:NM_001159514:exon9:c.A1106C:p.N369T,Macroh2a1:NM_001159515:exon9:c.A1103C:p.N368T,Macroh2a1:NM_012015:exon9:c.A1115C:p.N372T"	13qB1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.6105074	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	58243864	12A2p6	cell line	sgMsh2	58243864	T	C	SNV	Mutect2;MuSe;Vardict	3	0.097	99	0	0	NA	exonic	Gkap1	nonsynonymous SNV	Gkap1:NM_019832:exon7:c.A676G:p.R226G	13qB1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9685412	CTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr13	59517688	12A2p6	cell line	sgMsh2	59517688	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	88	0	0	NA	exonic	Agtpbp1	nonsynonymous SNV	"Agtpbp1:NM_001048008:exon9:c.T665C:p.V222A,Agtpbp1:NM_001284218:exon9:c.T665C:p.V222A,Agtpbp1:NM_001284221:exon9:c.T665C:p.V222A,Agtpbp1:NM_001377097:exon9:c.T665C:p.V222A,Agtpbp1:NM_023328:exon9:c.T665C:p.V222A"	13qB2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.8123029	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	63894710	12A2p6	cell line	sgMsh2	63894710	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	120	0	0	NA	exonic	Ercc6l2	nonsynonymous SNV	Ercc6l2:NM_001013608:exon18:c.A3535T:p.I1179F	13qB3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.933399	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	65187488	12A2p6	cell line	sgMsh2	65187488	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	95	0	0	NA	exonic	Nlrp4f	synonymous SNV	Nlrp4f:NM_175290:exon6:c.A2286G:p.S762S	13qB3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7494202	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr13	70592608	12A2p6	cell line	sgMsh2	70592608	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	251	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon18:c.T6479G:p.V2160G	13qC1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9999995	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	73677854	12A2p6	cell line	sgMsh2	73677854	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	81	0	0	NA	exonic	Slc6a18	nonsynonymous SNV	"Slc6a18:NM_001040692:exon1:c.T76C:p.Y26H,Slc6a18:NM_001136087:exon1:c.T76C:p.Y26H,Slc6a18:NM_001168643:exon1:c.T76C:p.Y26H,Slc6a18:NM_001168644:exon1:c.T76C:p.Y26H,Slc6a18:NM_001168645:exon1:c.T76C:p.Y26H,Slc6a18:NM_001168646:exon1:c.T76C:p.Y26H"	13qC1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.8537457	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	74173406	12A2p6	cell line	sgMsh2	74173406	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	219	0	0	NA	exonic	Exoc3	synonymous SNV	Exoc3:NM_177333:exon12:c.A1986G:p.A662A	13qC1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9999898	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr13	75098020	12A2p6	cell line	sgMsh2	75098020	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	201	0	0	NA	exonic	Pcsk1	stopgain	Pcsk1:NM_013628:exon4:c.G516A:p.W172X	13qC1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.9969451	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	77999645	12A2p6	cell line	sgMsh2	77999645	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	152	0	0	NA	exonic	Fam172a	synonymous SNV	"Fam172a:NM_001163420:exon7:c.T639C:p.S213S,Fam172a:NM_001163419:exon8:c.T831C:p.S277S,Fam172a:NM_138312:exon9:c.T969C:p.S323S"	13qC1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.7982135	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr13	85224293	12A2p6	cell line	sgMsh2	85224293	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.076	100	0	0	NA	exonic	Rasa1	frameshift deletion	Rasa1:NM_145452:exon19:c.2486delA:p.N829Mfs*3	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	NA	NA	ATT	frameshift	T	5	TTTTT	-1
22-2_par	chr13	89601478	12A2p6	cell line	sgMsh2	89601478	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.096	82	0	0	NA	exonic	Hapln1	nonsynonymous SNV	Hapln1:NM_013500:exon3:c.A141T:p.E47D	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.9386868	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	91774844	12A2p6	cell line	sgMsh2	91774844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	127	0	0	NA	exonic	Acot12	synonymous SNV	Acot12:NM_028790:exon11:c.T1059C:p.S353S	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.615858123	2	0.8114116	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr13	92521146	12A2p6	cell line	sgMsh2	92521146	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	145	0	0	NA	exonic	Zfyve16	synonymous SNV	Zfyve16:NM_173392:exon3:c.A2256G:p.K752K	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9245261	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr13	92522184	12A2p6	cell line	sgMsh2	92522184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	183	0	0	NA	exonic	Zfyve16	nonsynonymous SNV	Zfyve16:NM_173392:exon3:c.A1218G:p.I406M	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9984965	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	93096020	12A2p6	cell line	sgMsh2	93096020	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	95	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.T2559C:p.V853V	13qC3	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.576456	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr13	95731457	12A2p6	cell line	sgMsh2	95731457	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	102	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon8:c.A642G:p.L214L	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8237025	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr13	97114215	12A2p6	cell line	sgMsh2	97114215	A	G	SNV	Mutect2;Vardict	2	0.062	80	0	0	NA	exonic	Fam169a	synonymous SNV	"Fam169a:NM_001100458:exon10:c.A1053G:p.E351E,Fam169a:NM_001146045:exon10:c.A1053G:p.E351E"	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.8622932	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr13	98267388	12A2p6	cell line	sgMsh2	98267388	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	207	0	0	NA	exonic	Ankra2	nonsynonymous SNV	"Ankra2:NM_001271388:exon3:c.A359G:p.K120R,Ankra2:NM_001271389:exon3:c.A359G:p.K120R,Ankra2:NM_023472:exon3:c.A359G:p.K120R"	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	0.9999461	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	98272257	12A2p6	cell line	sgMsh2	98272257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	348	0	0	NA	exonic	Ankra2	nonsynonymous SNV	"Ankra2:NM_001271390:exon6:c.A287G:p.H96R,Ankra2:NM_001271391:exon6:c.A287G:p.H96R,Ankra2:NM_001271392:exon6:c.A287G:p.H96R,Ankra2:NM_001271388:exon7:c.A767G:p.H256R,Ankra2:NM_001271389:exon7:c.A767G:p.H256R,Ankra2:NM_023472:exon7:c.A767G:p.H256R"	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9999662	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	100179444	12A2p6	cell line	sgMsh2	100179444	G	T	SNV	Mutect2;MuSe;Vardict	3	0.082	349	0	0	NA	exonic	Naip2	nonsynonymous SNV	"Naip2:NM_001126182:exon7:c.C827A:p.A276D,Naip2:NM_010872:exon7:c.C827A:p.A276D"	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.951637	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	100222524	12A2p6	cell line	sgMsh2	100222524	G	A	SNV	Mutect2;Vardict	2	0.076	117	0	0	NA	exonic	Naip5	stopgain	Naip5:NM_010870:exon10:c.C2203T:p.Q735X	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	0.5121628	TGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	100425553	12A2p6	cell line	sgMsh2	100425553	A	T	SNV	Mutect2;MuSe;Vardict	3	0.123	146	0	0	NA	exonic	Naip1	nonsynonymous SNV	Naip1:NM_008670:exon11:c.T3103A:p.S1035T	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	2	0.9958635	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	104036898	12A2p6	cell line	sgMsh2	104036898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	104	0	0	NA	exonic	Nln	nonsynonymous SNV	Nln:NM_029447:exon11:c.A1799G:p.Y600C	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9940159	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	104168528	12A2p6	cell line	sgMsh2	104168528	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	195	0	0	NA	exonic	Trappc13	synonymous SNV	"Trappc13:NM_001093759:exon3:c.T150A:p.P50P,Trappc13:NM_001093760:exon3:c.T150A:p.P50P,Trappc13:NM_001360778:exon3:c.T150A:p.P50P,Trappc13:NM_025879:exon3:c.T150A:p.P50P"	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9878634	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr13	104312888	12A2p6	cell line	sgMsh2	104312888	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	154	0	0	NA	exonic	Adamts6	nonsynonymous SNV	Adamts6:NM_001081020:exon5:c.A805C:p.K269Q	13qD1	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.9499706	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr13	111438070	12A2p6	cell line	sgMsh2	111438070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	193	0	0	NA	exonic	Gpbp1	synonymous SNV	"Gpbp1:NM_001361924:exon8:c.T484C:p.L162L,Gpbp1:NM_001361926:exon8:c.T346C:p.L116L,Gpbp1:NM_001122963:exon9:c.T859C:p.L287L,Gpbp1:NM_001361923:exon9:c.T544C:p.L182L,Gpbp1:NM_001361925:exon9:c.T346C:p.L116L,Gpbp1:NM_028487:exon10:c.T919C:p.L307L"	13qD2.2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.768698825	1	0.9999752	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr13	113045454	12A2p6	cell line	sgMsh2	113045454	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	113	0	0	NA	exonic	Gpx8	synonymous SNV	Gpx8:NM_027127:exon2:c.A444G:p.E148E	13qD2.2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9617687	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr13	113045529	12A2p6	cell line	sgMsh2	113045529	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	174	0	0	NA	exonic	Gpx8	nonsynonymous SNV	Gpx8:NM_027127:exon2:c.A369T:p.E123D	13qD2.2	chr13-23782291-119495179	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.9999927	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	3072172	12A2p6	cell line	sgMsh2	3072172	T	A	SNV	Mutect2;Vardict	2	0.066	205	0	0	NA	exonic	Gm2897	synonymous SNV	Gm2897:NM_001177715:exon6:c.T417A:p.S139S	14qA1	chr14-3072172-4037583	2.02258217	1.02258217	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.973776	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr14	7933875	12A2p6	cell line	sgMsh2	7933875	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	49	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon39:c.A6529G:p.T2177A,Flnb:NM_134080:exon39:c.A6496G:p.T2166A"	14qA1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.8496706	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	8045600	12A2p6	cell line	sgMsh2	8045600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	60	0	0	NA	exonic	Abhd6	nonsynonymous SNV	"Abhd6:NM_001331065:exon5:c.A515G:p.Y172C,Abhd6:NM_001331064:exon6:c.A656G:p.Y219C,Abhd6:NM_025341:exon6:c.A656G:p.Y219C"	14qA1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.827137917	1	0.9875729	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	16422682	12A2p6	cell line	sgMsh2	16422682	C	A	SNV	Mutect2;Vardict	2	0.05	105	0	0	NA	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon31:c.C4118A:p.A1373D	14qA2	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	0.9895514	GCT	nonsynonymous	CTG	12	CTGCTGCTGCTG	NA
22-2_par	chr14	20650532	12A2p6	cell line	sgMsh2	20650532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	61	0	0	NA	exonic	Myoz1	nonsynonymous SNV	Myoz1:NM_021508:exon5:c.T616C:p.Y206H	14qA3	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.629344067	2	0.000961912	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	20713957	12A2p6	cell line	sgMsh2	20713957	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.174	27	0	0	NA	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon10:c.A1394G:p.K465R,Zswim8:NM_001252082:exon10:c.A1394G:p.K465R,Zswim8:NM_027996:exon10:c.A1394G:p.K465R"	14qA3	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.782184769	1	0.7533312	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	20837872	12A2p6	cell line	sgMsh2	20837872	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	108	0	0	NA	exonic	Plau	nonsynonymous SNV	Plau:NM_008873:exon4:c.G183T:p.E61D	14qA3	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.791175399	1	0.9987743	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	20995042	12A2p6	cell line	sgMsh2	20995042	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	68	0	0	NA	exonic	Vcl	nonsynonymous SNV	Vcl:NM_009502:exon7:c.T814A:p.S272T	14qA3	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9480987	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	24454650	12A2p6	cell line	sgMsh2	24454650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	84	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon26:c.A3349G:p.I1117V	14qA3	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.8153904	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	31344566	12A2p6	cell line	sgMsh2	31344566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	156	0	0	NA	exonic	Capn7	synonymous SNV	"Capn7:NM_001360187:exon3:c.A204G:p.L68L,Capn7:NM_009796:exon3:c.A336G:p.L112L"	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.674297215	1	0.09878565	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr14	31615370	12A2p6	cell line	sgMsh2	31615370	T	C	SNV	Mutect2;Vardict	2	0.063	115	0	0	NA	exonic	Hacl1	nonsynonymous SNV	Hacl1:NM_019975:exon14:c.A1411G:p.I471V	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9257271	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	34398172	12A2p6	cell line	sgMsh2	34398172	T	A	SNV	Mutect2;Vardict	2	0.097	51	0	0	NA	exonic	Mmrn2	nonsynonymous SNV	Mmrn2:NM_153127:exon6:c.T998A:p.V333E	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.8585033	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	34729313	12A2p6	cell line	sgMsh2	34729313	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	60	0	0	NA	exonic	Wapl	nonsynonymous SNV	"Wapl:NM_001004436:exon9:c.T2303A:p.L768Q,Wapl:NM_001301330:exon9:c.T2285A:p.L762Q"	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9532241	CTA	nonsynonymous	AGCTA	10	AGCTAAGCTA	NA
22-2_par	chr14	37072312	12A2p6	cell line	sgMsh2	37072313	GT	-	Deletion	Mutect2;Vardict	2	0.046	116	0	0	NA	exonic	Lrit2	frameshift deletion	"Lrit2:NM_001360134:exon3:c.1209_1210del:p.V405Gfs*13,Lrit2:NM_173418:exon3:c.1332_1333del:p.V446Gfs*13"	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	NA	NA	AGT	frameshift	NA	NA	NA	-2
22-2_par	chr14	37133261	12A2p6	cell line	sgMsh2	37133261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	155	0	0	NA	exonic	Ghitm	nonsynonymous SNV	"Ghitm:NM_001199122:exon3:c.A142G:p.T48A,Ghitm:NM_001359902:exon3:c.A142G:p.T48A,Ghitm:NM_078478:exon3:c.A142G:p.T48A"	14qB	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9994504	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	45145039	12A2p6	cell line	sgMsh2	45145039	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	52	0	0	NA	exonic	Txndc16	nonsynonymous SNV	"Txndc16:NM_001310534:exon18:c.C1748A:p.A583D,Txndc16:NM_172597:exon18:c.C1748A:p.A583D"	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.985351	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	45595495	12A2p6	cell line	sgMsh2	45595495	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	72	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon12:c.A2559G:p.L853L,Ddhd1:NM_176845:exon13:c.A2643G:p.L881L,Ddhd1:NM_001042719:exon14:c.A2745G:p.L915L,Ddhd1:NM_001284399:exon15:c.A1632G:p.L544L"	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.000960915	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr14	47676796	12A2p6	cell line	sgMsh2	47676796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	300	0	0	NA	exonic	Ktn1	nonsynonymous SNV	"Ktn1:NM_001347522:exon6:c.T1201C:p.Y401H,Ktn1:NM_008477:exon6:c.T1201C:p.Y401H,Ktn1:NM_001293635:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347519:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347520:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347521:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347523:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347524:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347525:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347526:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347527:exon7:c.T1201C:p.Y401H,Ktn1:NM_001347528:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379486:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379487:exon7:c.T1198C:p.Y400H,Ktn1:NM_001379488:exon7:c.T1198C:p.Y400H,Ktn1:NM_001379489:exon7:c.T1198C:p.Y400H,Ktn1:NM_001379490:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379491:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379492:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379493:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379494:exon7:c.T1201C:p.Y401H,Ktn1:NM_001379495:exon7:c.T1201C:p.Y401H,Ktn1:NM_001293636:exon8:c.T676C:p.Y226H"	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.9833313	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	48474036	12A2p6	cell line	sgMsh2	48474036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.138	40	0	0	NA	exonic	Tmem260	nonsynonymous SNV	"Tmem260:NM_172600:exon5:c.T581C:p.L194S,Tmem260:NM_001310584:exon6:c.T125C:p.L42S"	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.6808913	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	49180739	12A2p6	cell line	sgMsh2	49180739	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	72	0	0	NA	exonic	Naa30	nonsynonymous SNV	Naa30:NM_027492:exon4:c.T935C:p.M312T	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5390331	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	50140113	12A2p6	cell line	sgMsh2	50140113	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	175	0	0	NA	exonic	Olfr728	synonymous SNV	Olfr728:NM_001011809:exon1:c.T525C:p.D175D	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6705895	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr14	51145555	12A2p6	cell line	sgMsh2	51145555	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	138	0	0	NA	exonic	Rnase1	nonsynonymous SNV	Rnase1:NM_011271:exon2:c.A341G:p.N114S	14qC1	chr14-6587069-53079320	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9925512	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	54367390	12A2p6	cell line	sgMsh2	54367390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	112	0	0	NA	exonic	Oxa1l	nonsynonymous SNV	Oxa1l:NM_026936:exon6:c.T779C:p.L260S	14qC2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9974419	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	54632500	12A2p6	cell line	sgMsh2	54632500	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	52	0	0	NA	exonic	Cdh24	synonymous SNV	Cdh24:NM_199470:exon12:c.A1959G:p.G653G	14qC2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.930530156	1	0.9975119	CTC	synonymous	TCC	8	TCCTCCTC	NA
22-2_par	chr14	55073588	12A2p6	cell line	sgMsh2	55073588	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	50	0	0	NA	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon2:c.A1648C:p.T550P	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.917044212	1	0.9957403	GTG	nonsynonymous	GGTG	10	GGTGGGTGGG	NA
22-2_par	chr14	55236074	12A2p6	cell line	sgMsh2	55236074	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	41	0	0	NA	exonic	Dhrs2	nonsynonymous SNV	Dhrs2:NM_027790:exon5:c.T189G:p.H63Q	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	2	0.5208194	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	56043903	12A2p6	cell line	sgMsh2	56043903	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.056	161	0	0	NA	exonic	Mcpt2	frameshift deletion	Mcpt2:NM_008571:exon4:c.563delC:p.A188Efs*9	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	NA	NA	GCA	frameshift	GCAG	8	GCAGGCAG	-1
22-2_par	chr14	56117736	12A2p6	cell line	sgMsh2	56117736	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	247	0	0	NA	exonic	Gzme	nonsynonymous SNV	Gzme:NM_010373:exon5:c.A737C:p.K246T	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9999517	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	56672532	12A2p6	cell line	sgMsh2	56672532	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	73	0	0	NA	exonic	Mphosph8	nonsynonymous SNV	"Mphosph8:NM_001360072:exon2:c.A341G:p.K114R,Mphosph8:NM_023773:exon2:c.A341G:p.K114R"	14qC3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5213953	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	61189622	12A2p6	cell line	sgMsh2	61189622	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	107	0	0	NA	exonic	Sacs	nonsynonymous SNV	"Sacs:NM_015788:exon7:c.A478T:p.N160Y,Sacs:NM_172809:exon7:c.A478T:p.N160Y"	14qD1	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8963982	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	61225272	12A2p6	cell line	sgMsh2	61225272	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	35	0	0	NA	exonic	Sgcg	frameshift deletion	Sgcg:NM_011892:exon7:c.625delG:p.V209Ffs*35	14qD1	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.921539527	NA	NA	ACC	frameshift	C	5	CCCCC	-1
22-2_par	chr14	69796369	12A2p6	cell line	sgMsh2	69796369	T	G	SNV	Mutect2;Vardict	2	0.049	130	0	0	NA	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon5:c.A1406C:p.N469T	14qD2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9972444	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	73164706	12A2p6	cell line	sgMsh2	73164706	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	127	0	0	NA	exonic	Rcbtb2	synonymous SNV	"Rcbtb2:NM_001170694:exon7:c.T372C:p.G124G,Rcbtb2:NM_134083:exon7:c.T372C:p.G124G"	14qD3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.7129517	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr14	75125176	12A2p6	cell line	sgMsh2	75125176	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	52	0	0	NA	exonic	Lrrc63	nonsynonymous SNV	Lrrc63:NM_027581:exon4:c.A913G:p.T305A	14qD3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.008972181	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
22-2_par	chr14	75270765	12A2p6	cell line	sgMsh2	75270765	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	161	0	0	NA	exonic	Cpb2	nonsynonymous SNV	Cpb2:NM_019775:exon7:c.T665A:p.M222K	14qD3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.8128345	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	75775062	12A2p6	cell line	sgMsh2	75775062	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	110	0	0	NA	exonic	Slc25a30	nonsynonymous SNV	Slc25a30:NM_026232:exon3:c.T145C:p.Y49H	14qD3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8424066	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	86986054	12A2p6	cell line	sgMsh2	86986054	T	C	SNV	Mutect2;Vardict	2	0.051	147	0	0	NA	exonic	Diaph3	synonymous SNV	Diaph3:NM_019670:exon10:c.A1023G:p.R341R	14qE1	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9979692	TTC	synonymous	NA	NA	NA	NA
22-2_par	chr14	99072635	12A2p6	cell line	sgMsh2	99072635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	217	0	0	NA	exonic	Bora	nonsynonymous SNV	Bora:NM_175265:exon11:c.A1399G:p.S467G	14qE2.2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6454676	AAG	nonsynonymous	GTAA	8	GTAAGTAA	NA
22-2_par	chr14	99137122	12A2p6	cell line	sgMsh2	99137122	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	121	0	0	NA	exonic	Pibf1	synonymous SNV	Pibf1:NM_029320:exon8:c.A996T:p.V332V	14qE2.2	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.8871436	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr14	101887599	12A2p6	cell line	sgMsh2	101887599	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	66	0	0	NA	exonic	Lmo7	frameshift deletion	"Lmo7:NM_001347628:exon7:c.1160delG:p.E388Rfs*14,Lmo7:NM_201529:exon10:c.1859delG:p.E621Rfs*14"	14qE2.3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	NA	NA	TGG	frameshift	NA	NA	NA	-1
22-2_par	chr14	103817130	12A2p6	cell line	sgMsh2	103817130	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	152	0	0	NA	exonic	Ednrb	nonsynonymous SNV	"Ednrb:NM_001276296:exon7:c.A1265G:p.K422R,Ednrb:NM_007904:exon7:c.A1265G:p.K422R,Ednrb:NM_001136061:exon8:c.A1265G:p.K422R"	14qE2.3	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9943757	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	118599355	12A2p6	cell line	sgMsh2	118599355	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	28	0	0	NA	exonic	Abcc4	nonsynonymous SNV	"Abcc4:NM_001163676:exon14:c.T1768C:p.S590P,Abcc4:NM_001033336:exon15:c.T1993C:p.S665P,Abcc4:NM_001163675:exon15:c.T1864C:p.S622P"	14qE4	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.854109805	1	0.8850444	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	120923547	12A2p6	cell line	sgMsh2	120923547	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	144	0	0	NA	exonic	Ipo5	nonsynonymous SNV	"Ipo5:NM_001360602:exon6:c.T451C:p.F151L,Ipo5:NM_023579:exon6:c.T631C:p.F211L"	14qE5	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.6405037	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr14	122459585	12A2p6	cell line	sgMsh2	122459585	T	C	SNV	Mutect2;MuSe;Vardict	3	0.137	60	0	0	NA	exonic	Zic5	synonymous SNV	Zic5:NM_022987:exon2:c.A1617G:p.P539P	14qE5	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.615858123	2	0.7304155	GTG	synonymous	G	5	GGGGG	NA
22-2_par	chr14	122562984	12A2p6	cell line	sgMsh2	122562984	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	125	0	0	NA	exonic	Pcca	synonymous SNV	Pcca:NM_144844:exon4:c.T285C:p.S95S	14qE5	chr14-53336808-123291781	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	7.85E-08	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr15	8365895	12A2p6	cell line	sgMsh2	8365895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	60	0	0	NA	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon6:c.A507G:p.Q169Q,Nipbl:NM_201232:exon6:c.A507G:p.Q169Q"	15qA1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.732736307	1	0.8778542	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr15	10381416	12A2p6	cell line	sgMsh2	10381416	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	114	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon7:c.G755T:p.S252I,Agxt2:NM_001310735:exon7:c.G755T:p.S252I,Agxt2:NM_001310736:exon7:c.G752T:p.S251I"	15qA1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9628597	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	10633231	12A2p6	cell line	sgMsh2	10633231	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.105	71	0	0	NA	exonic	Rai14	synonymous SNV	"Rai14:NM_001166408:exon3:c.G72A:p.L24L,Rai14:NM_001356534:exon3:c.G72A:p.L24L,Rai14:NM_030690:exon3:c.G72A:p.L24L"	15qA1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9651086	GCA	synonymous	NA	NA	NA	NA
22-2_par	chr15	12269875	12A2p6	cell line	sgMsh2	12269875	A	G	SNV	Mutect2;Vardict	2	0.093	53	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon16:c.A1439G:p.H480R,Mtmr12:NM_172958:exon16:c.A2048G:p.H683R"	15qA1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.8242677	CAC	nonsynonymous	CAGG	8	CAGGCAGG	NA
22-2_par	chr15	13034642	12A2p6	cell line	sgMsh2	13034642	G	A	SNV	Mutect2;Vardict	2	0.074	62	0	0	NA	exonic	Cdh6	nonsynonymous SNV	Cdh6:NM_007666:exon12:c.C1931T:p.P644L	15qA1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	9.75E-05	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	19011012	12A2p6	cell line	sgMsh2	19011012	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	69	0	0	NA	exonic	Cdh10	nonsynonymous SNV	"Cdh10:NM_001316758:exon11:c.A1780T:p.N594Y,Cdh10:NM_009865:exon11:c.A1780T:p.N594Y"	15qA2	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9720366	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	28409966	12A2p6	cell line	sgMsh2	28409966	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.16	67	0	0	NA	exonic	Dnah5	frameshift insertion	Dnah5:NM_133365:exon64:c.10985dupA:p.N3664Kfs*3	15qB1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.719250362	NA	NA	GGA	frameshift	A	5	AAAAA	1
22-2_par	chr15	31482903	12A2p6	cell line	sgMsh2	31482903	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	155	0	0	NA	exonic	Marchf6	synonymous SNV	Marchf6:NM_172606:exon16:c.A1353G:p.L451L	15qB2	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.615858123	2	0.8388935	ATA	synonymous	NA	NA	NA	NA
22-2_par	chr15	33213111	12A2p6	cell line	sgMsh2	33213111	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	75	0	0	NA	exonic	Cpq	nonsynonymous SNV	"Cpq:NM_176073:exon2:c.A275G:p.N92S,Cpq:NM_018755:exon3:c.A275G:p.N92S"	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8115735	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	36546793	12A2p6	cell line	sgMsh2	36546793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	257	0	0	NA	exonic	Snx31	nonsynonymous SNV	"Snx31:NM_001347022:exon3:c.T244C:p.Y82H,Snx31:NM_025712:exon3:c.T244C:p.Y82H"	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.9999998	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	37439591	12A2p6	cell line	sgMsh2	37439591	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	190	0	0	NA	exonic	4930447A16Rik	nonsynonymous SNV	4930447A16Rik:NM_029113:exon3:c.T332G:p.L111R	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9979165	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	39872780	12A2p6	cell line	sgMsh2	39872780	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	52	0	0	NA	exonic	Lrp12	synonymous SNV	"Lrp12:NM_001347036:exon6:c.T1755C:p.N585N,Lrp12:NM_172814:exon7:c.T1812C:p.N604N"	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9192894	GAT	synonymous	NA	NA	NA	NA
22-2_par	chr15	41102196	12A2p6	cell line	sgMsh2	41102196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	80	0	0	NA	exonic	Zfpm2	synonymous SNV	"Zfpm2:NM_001356998:exon7:c.T1917C:p.C639C,Zfpm2:NM_011766:exon8:c.T2076C:p.C692C"	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999932	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr15	42459680	12A2p6	cell line	sgMsh2	42459680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	43	0	0	NA	exonic	Angpt1	nonsynonymous SNV	"Angpt1:NM_001286062:exon7:c.A1189G:p.K397E,Angpt1:NM_009640:exon7:c.A1192G:p.K398E"	15qB3.1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.997959878	1	0.9977253	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	44672682	12A2p6	cell line	sgMsh2	44672682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	79	0	0	NA	exonic	Sybu	synonymous SNV	"Sybu:NM_001285841:exon4:c.A1233G:p.V411V,Sybu:NM_001285842:exon5:c.A1233G:p.V411V,Sybu:NM_001285844:exon5:c.A1452G:p.V484V,Sybu:NM_001032727:exon6:c.A1647G:p.V549V,Sybu:NM_001285843:exon6:c.A1560G:p.V520V,Sybu:NM_001285840:exon7:c.A1863G:p.V621V,Sybu:NM_001358583:exon7:c.A1494G:p.V498V,Sybu:NM_001358584:exon7:c.A1494G:p.V498V,Sybu:NM_001358582:exon8:c.A1860G:p.V620V,Sybu:NM_176998:exon8:c.A2247G:p.V749V,Sybu:NM_178765:exon8:c.A1863G:p.V621V"	15qB3.2	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.759708195	1	0.9756135	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr15	55609518	12A2p6	cell line	sgMsh2	55609518	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	390	0	0	NA	exonic	Mtbp	nonsynonymous SNV	Mtbp:NM_001168250:exon17:c.T1877G:p.L626W	15qD1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	2	2.54E-08	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	56682097	12A2p6	cell line	sgMsh2	56682097	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	103	0	0	NA	exonic	Has2	synonymous SNV	Has2:NM_008216:exon2:c.T108C:p.F36F	15qD1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9947743	TAA	synonymous	NA	NA	NA	NA
22-2_par	chr15	57263514	12A2p6	cell line	sgMsh2	57263514	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	180	0	0	NA	exonic	Slc22a22	nonsynonymous SNV	"Slc22a22:NM_001357930:exon2:c.T158C:p.L53P,Slc22a22:NM_172378:exon3:c.T158C:p.L53P"	15qD1	chr15-3279130-63831123	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999397	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	63943299	12A2p6	cell line	sgMsh2	63943299	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	53	0	0	NA	exonic	Cyrib	nonsynonymous SNV	"Cyrib:NM_001360035:exon6:c.T323A:p.L108Q,Cyrib:NM_001360037:exon6:c.T323A:p.L108Q,Cyrib:NM_001360038:exon6:c.T323A:p.L108Q,Cyrib:NM_144846:exon6:c.T323A:p.L108Q,Cyrib:NM_001360036:exon7:c.T323A:p.L108Q"	15qD1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8470402	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	64725507	12A2p6	cell line	sgMsh2	64725507	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	216	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon12:c.A2604T:p.A868A,Adcy8:NM_001331075:exon12:c.A2496T:p.A832A,Adcy8:NM_009623:exon13:c.A2694T:p.A898A"	15qD1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	3	0.9999829	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr15	72007127	12A2p6	cell line	sgMsh2	72007127	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	112	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.G180T:p.K60N	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	9.72E-09	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	75893409	12A2p6	cell line	sgMsh2	75893409	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.166	48	0	0	NA	exonic	Naprt	synonymous SNV	Naprt:NM_172607:exon4:c.A465T:p.L155L	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.746222251	1	0.8498073	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr15	76106588	12A2p6	cell line	sgMsh2	76106588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	72	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A6092G:p.H2031R	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.7950738	ATG	nonsynonymous	TGG	8	TGGTGGTG	NA
22-2_par	chr15	76175079	12A2p6	cell line	sgMsh2	76175079	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	34	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A10810T:p.S3604C,Plec:NM_201385:exon32:c.A10696T:p.S3566C,Plec:NM_201386:exon32:c.A10657T:p.S3553C,Plec:NM_201387:exon32:c.A10252T:p.S3418C,Plec:NM_201388:exon32:c.A10252T:p.S3418C,Plec:NM_201389:exon32:c.A11152T:p.S3718C,Plec:NM_201390:exon32:c.A10627T:p.S3543C,Plec:NM_201391:exon32:c.A10723T:p.S3575C,Plec:NM_201392:exon32:c.A10252T:p.S3418C,Plec:NM_201393:exon32:c.A10744T:p.S3582C,Plec:NM_201394:exon32:c.A10723T:p.S3575C,Plec:NM_001163540:exon33:c.A11167T:p.S3723C,Plec:NM_001163549:exon33:c.A10738T:p.S3580C,Plec:NM_001163542:exon34:c.A10861T:p.S3621C,Plec:NM_001164203:exon34:c.A10252T:p.S3418C"	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.773194139	1	0.8084499	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	76297950	12A2p6	cell line	sgMsh2	76297950	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	98	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon22:c.T3109A:p.Y1037N	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.737231621	1	0.9777869	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	76334796	12A2p6	cell line	sgMsh2	76334796	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	38	0	0	NA	exonic	Gpaa1	nonsynonymous SNV	Gpaa1:NM_010331:exon12:c.C1837T:p.L613F	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.926034841	1	0.9844412	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
22-2_par	chr15	76593269	12A2p6	cell line	sgMsh2	76593269	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	162	0	0	NA	exonic	Adck5	nonsynonymous SNV	Adck5:NM_172960:exon4:c.A302T:p.Y101F	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	1	0.9999989	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	76709122	12A2p6	cell line	sgMsh2	76709122	T	C	SNV	Mutect2;Vardict	2	0.051	95	0	0	NA	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon5:c.A787G:p.K263E	15qD3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9809841	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	78167954	12A2p6	cell line	sgMsh2	78167954	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	74	0	0	NA	exonic	Ift27	nonsynonymous SNV	Ift27:NM_025931:exon2:c.T73A:p.F25I	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.09604333	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	78348252	12A2p6	cell line	sgMsh2	78348252	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	114	0	0	NA	exonic	Csf2rb	synonymous SNV	"Csf2rb:NM_007780:exon14:c.A1758G:p.L586L,Csf2rb:NM_001358854:exon15:c.A1758G:p.L586L"	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	7.08E-07	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr15	80966174	12A2p6	cell line	sgMsh2	80966174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	143	0	0	NA	exonic	Adsl	nonsynonymous SNV	Adsl:NM_009634:exon10:c.T1093C:p.Y365H	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.996506	GTA	nonsynonymous	TGG	8	TGGTGGTG	NA
22-2_par	chr15	81237620	12A2p6	cell line	sgMsh2	81237620	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	125	0	0	NA	exonic	Mchr1	synonymous SNV	Mchr1:NM_145132:exon2:c.T570C:p.G190G	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8730982	GTG	synonymous	G	5	GGGGG	NA
22-2_par	chr15	81407634	12A2p6	cell line	sgMsh2	81407634	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	64	0	0	NA	exonic	Dnajb7	nonsynonymous SNV	Dnajb7:NM_021317:exon1:c.G501T:p.E167D	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.7589304	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	81851059	12A2p6	cell line	sgMsh2	81851059	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.194	58	0	0	NA	exonic	Tob2	synonymous SNV	Tob2:NM_020507:exon2:c.A708C:p.L236L	15qE1	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.872091064	1	0.995111	ATA	synonymous	ATAG	9	ATAGATAGA	NA
22-2_par	chr15	83983508	12A2p6	cell line	sgMsh2	83983508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	235	0	0	NA	exonic	Efcab6	synonymous SNV	Efcab6:NM_029946:exon8:c.T768C:p.N256N	15qE2	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.991755	CAT	synonymous	NA	NA	NA	NA
22-2_par	chr15	86032167	12A2p6	cell line	sgMsh2	86032167	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	70	0	0	NA	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon1:c.A1604G:p.N535S	15qE2	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9999676	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	88729349	12A2p6	cell line	sgMsh2	88729349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	107	0	0	NA	exonic	Brd1	nonsynonymous SNV	Brd1:NM_001033274:exon2:c.T1342C:p.C448R	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9873889	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	88974542	12A2p6	cell line	sgMsh2	88974542	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	164	0	0	NA	exonic	Mlc1	synonymous SNV	"Mlc1:NM_001364855:exon5:c.T474C:p.T158T,Mlc1:NM_133241:exon5:c.T384C:p.T128T"	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.9991071	TAG	synonymous	GTA	8	GTAGTAGT	NA
22-2_par	chr15	89085396	12A2p6	cell line	sgMsh2	89085396	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	89	0	0	NA	exonic	Trabd	nonsynonymous SNV	"Trabd:NM_001355617:exon8:c.A650G:p.Y217C,Trabd:NM_001378756:exon8:c.A791G:p.Y264C,Trabd:NM_001378758:exon8:c.A986G:p.Y329C,Trabd:NM_026485:exon8:c.A791G:p.Y264C,Trabd:NM_001378757:exon9:c.A986G:p.Y329C"	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9243554	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	89187380	12A2p6	cell line	sgMsh2	89187380	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	52	0	0	NA	exonic	Dennd6b	nonsynonymous SNV	Dennd6b:NM_027081:exon10:c.T833A:p.L278Q	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.768698825	1	0.9185917	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	89336036	12A2p6	cell line	sgMsh2	89336036	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	120	0	0	NA	exonic	Miox	nonsynonymous SNV	Miox:NM_019977:exon6:c.T430C:p.F144L	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.9580274	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	89376624	12A2p6	cell line	sgMsh2	89376624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	124	0	0	NA	exonic	Tymp	nonsynonymous SNV	Tymp:NM_138302:exon2:c.A125G:p.N42S	15qE3	chr15-63833026-90569821	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	2	9.95E-06	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	95296195	12A2p6	cell line	sgMsh2	95296195	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	139	0	0	NA	exonic	Nell2	nonsynonymous SNV	"Nell2:NM_001356951:exon15:c.T1636C:p.C546R,Nell2:NM_001289653:exon16:c.T1636C:p.C546R,Nell2:NM_001356950:exon16:c.T1636C:p.C546R"	15qE3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8969881	CAG	nonsynonymous	GGCA	8	GGCAGGCA	NA
22-2_par	chr15	95435157	12A2p6	cell line	sgMsh2	95435157	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	171	0	0	NA	exonic	Nell2	nonsynonymous SNV	"Nell2:NM_001356951:exon5:c.A520T:p.I174F,Nell2:NM_001289653:exon6:c.A520T:p.I174F,Nell2:NM_001356950:exon6:c.A520T:p.I174F"	15qE3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9999255	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	96419902	12A2p6	cell line	sgMsh2	96419902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	171	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon11:c.A1780G:p.T594A	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.9836946	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	96420581	12A2p6	cell line	sgMsh2	96420581	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	49	0	0	NA	exonic	Scaf11	synonymous SNV	Scaf11:NM_028148:exon11:c.A1101G:p.R367R	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8299671	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr15	97761112	12A2p6	cell line	sgMsh2	97761112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	31	0	0	NA	exonic	Rapgef3	synonymous SNV	"Rapgef3:NM_001177810:exon5:c.T498C:p.C166C,Rapgef3:NM_001177811:exon5:c.T498C:p.C166C,Rapgef3:NM_001357630:exon5:c.T498C:p.C166C,Rapgef3:NM_144850:exon5:c.T498C:p.C166C"	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9858883	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr15	98641629	12A2p6	cell line	sgMsh2	98641629	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	83	0	0	NA	exonic	Cacnb3	nonsynonymous SNV	"Cacnb3:NM_001286226:exon8:c.C565G:p.R189G,Cacnb3:NM_001044741:exon9:c.C643G:p.R215G,Cacnb3:NM_001356543:exon9:c.C640G:p.R214G,Cacnb3:NM_007581:exon9:c.C646G:p.R216G"	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	2	0.9859681	ACG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	98839400	12A2p6	cell line	sgMsh2	98839400	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	165	0	0	NA	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon49:c.A15814G:p.T5272A	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	3	0.9997625	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	98853204	12A2p6	cell line	sgMsh2	98853204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	34	0	0	NA	exonic	Kmt2d	stopgain	Kmt2d:NM_001033276:exon32:c.A6607T:p.K2203X	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.8617815	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	99081211	12A2p6	cell line	sgMsh2	99081211	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	66	0	0	NA	exonic	Troap	synonymous SNV	"Troap:NM_001162506:exon10:c.C1011G:p.L337L,Troap:NM_030159:exon10:c.C1011G:p.L337L"	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9558558	TCT	synonymous	NA	NA	NA	NA
22-2_par	chr15	99087375	12A2p6	cell line	sgMsh2	99087375	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	56	0	0	NA	exonic	C1ql4	synonymous SNV	C1ql4:NM_001024702:exon1:c.G354A:p.R118R	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.7953548	GCC	synonymous	NA	NA	NA	NA
22-2_par	chr15	99101605	12A2p6	cell line	sgMsh2	99101605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	56	0	0	NA	exonic	Dnajc22	nonsynonymous SNV	Dnajc22:NM_176835:exon2:c.T670C:p.F224L	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	1	0.5756899	CTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr15	100618029	12A2p6	cell line	sgMsh2	100618029	T	C	SNV	Mutect2;Vardict	2	0.041	118	0	0	NA	exonic	Dazap2	synonymous SNV	Dazap2:NM_011873:exon3:c.T237C:p.A79A	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.9989893	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr15	101228837	12A2p6	cell line	sgMsh2	101228837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	97	0	0	NA	exonic	Grasp	nonsynonymous SNV	Grasp:NM_019518:exon3:c.T299G:p.V100G	15qF1	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.827137917	1	0.9994129	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	101436694	12A2p6	cell line	sgMsh2	101436694	T	C	SNV	Mutect2;Vardict	2	0.087	111	0	0	NA	exonic	Krt87	nonsynonymous SNV	Krt87:NM_001003668:exon2:c.A431G:p.Q144R	15qF2	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.8793798	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	102281113	12A2p6	cell line	sgMsh2	102281113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	52	0	0	NA	exonic	Mfsd5	nonsynonymous SNV	Mfsd5:NM_134100:exon2:c.T919C:p.Y307H	15qF3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.7373869	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	102322934	12A2p6	cell line	sgMsh2	102322934	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	46	0	0	NA	exonic	Espl1	nonsynonymous SNV	"Espl1:NM_001014976:exon27:c.T5746G:p.S1916A,Espl1:NM_001356312:exon27:c.T5746G:p.S1916A"	15qF3	chr15-94279701-102454328	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9008513	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr15	103526655	12A2p6	cell line	sgMsh2	103526655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	68	0	0	NA	exonic	Pde1b	nonsynonymous SNV	"Pde1b:NM_001285890:exon11:c.C1174A:p.R392S,Pde1b:NM_001357980:exon11:c.C1174A:p.R392S,Pde1b:NM_008800:exon12:c.C1231A:p.R411S"	15qF3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	4676950	12A2p6	cell line	sgMsh2	4676950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	88	0	0	NA	exonic	Coro7	nonsynonymous SNV	Coro7:NM_030205:exon2:c.A143G:p.N48S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.85860512	1	0.9996178	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	9992474	12A2p6	cell line	sgMsh2	9992474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	44	0	0	NA	exonic	Grin2a	synonymous SNV	Grin2a:NM_008170:exon3:c.T60C:p.G20G	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.95300673	1	0.9955028	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr16	13677112	12A2p6	cell line	sgMsh2	13677112	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	204	0	0	NA	exonic	Bfar	nonsynonymous SNV	Bfar:NM_025653:exon2:c.G74C:p.R25T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.930530156	1	1.01E-09	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	17522180	12A2p6	cell line	sgMsh2	17522180	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	245	0	0	NA	exonic	Lztr1	synonymous SNV	"Lztr1:NM_001331226:exon12:c.A1014T:p.T338T,Lztr1:NM_001331227:exon12:c.A567T:p.T189T,Lztr1:NM_025808:exon12:c.A1275T:p.T425T"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999998	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr16	17771730	12A2p6	cell line	sgMsh2	17771730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	179	0	0	NA	exonic	Klhl22	nonsynonymous SNV	"Klhl22:NM_001379023:exon2:c.A254G:p.E85G,Klhl22:NM_001379026:exon2:c.A254G:p.E85G,Klhl22:NM_001359068:exon3:c.A254G:p.E85G,Klhl22:NM_001379022:exon3:c.A254G:p.E85G,Klhl22:NM_001379024:exon3:c.A311G:p.E104G,Klhl22:NM_001379025:exon3:c.A254G:p.E85G,Klhl22:NM_145479:exon3:c.A254G:p.E85G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6732914	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	17844124	12A2p6	cell line	sgMsh2	17844124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	137	0	0	NA	exonic	Dgcr2	nonsynonymous SNV	"Dgcr2:NM_001109750:exon9:c.T1232C:p.L411P,Dgcr2:NM_010048:exon9:c.T1241C:p.L414P"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.9460989	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	19530606	12A2p6	cell line	sgMsh2	19530606	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	120	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.A313G:p.T105A	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	1.42E-08	GTC	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr16	19769487	12A2p6	cell line	sgMsh2	19769487	A	G	SNV	Mutect2;Vardict	2	0.034	183	0	0	NA	exonic	B3gnt5	nonsynonymous SNV	"B3gnt5:NM_054052:exon4:c.A455G:p.K152R,B3gnt5:NM_001159408:exon5:c.A455G:p.K152R,B3gnt5:NM_001159407:exon6:c.A455G:p.K152R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	3	0.9999975	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	19982894	12A2p6	cell line	sgMsh2	19982894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	59	0	0	NA	exonic	Klhl6	nonsynonymous SNV	Klhl6:NM_183390:exon1:c.T110C:p.V37A	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.795670713	1	0.9708265	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	23109123	12A2p6	cell line	sgMsh2	23109123	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	200	0	0	NA	exonic	Eif4a2	nonsynonymous SNV	"Eif4a2:NM_001123038:exon4:c.A212G:p.Y71C,Eif4a2:NM_001347179:exon4:c.A215G:p.Y72C,Eif4a2:NM_013506:exon4:c.A212G:p.Y71C"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9998946	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	23114062	12A2p6	cell line	sgMsh2	23114062	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	72	0	0	NA	exonic	Rfc4	nonsynonymous SNV	Rfc4:NM_145480:exon11:c.T1045G:p.L349V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9749841	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	31265305	12A2p6	cell line	sgMsh2	31265305	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	308	0	0	NA	exonic	Ppp1r2	nonsynonymous SNV	Ppp1r2:NM_025800:exon2:c.A233G:p.N78S	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9999854	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	32836525	12A2p6	cell line	sgMsh2	32836525	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	112	0	0	NA	exonic	Rubcn	synonymous SNV	"Rubcn:NM_001374776:exon9:c.A1296T:p.V432V,Rubcn:NM_172615:exon9:c.A1479T:p.V493V,Rubcn:NM_001200038:exon10:c.A1524T:p.V508V"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9808778	CTA	synonymous	TCC	8	TCCTCCTC	NA
22-2_par	chr16	33089371	12A2p6	cell line	sgMsh2	33089371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	101	0	0	NA	exonic	Lmln	nonsynonymous SNV	Lmln:NM_172823:exon10:c.A1121G:p.E374G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.984473933	1	0.9999995	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	34227138	12A2p6	cell line	sgMsh2	34227138	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	69	0	0	NA	exonic	Kalrn	synonymous SNV	"Kalrn:NM_001164268:exon16:c.A2712G:p.G904G,Kalrn:NM_177357:exon16:c.A2712G:p.G904G"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5178252	ATC	synonymous	ATCC	8	ATCCATCC	NA
22-2_par	chr16	35730313	12A2p6	cell line	sgMsh2	35730313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	99	0	0	NA	exonic	Slc49a4	nonsynonymous SNV	Slc49a4:NM_153550:exon5:c.A915T:p.L305F	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9923992	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	35840736	12A2p6	cell line	sgMsh2	35840736	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	127	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon14:c.T4841C:p.L1614P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8767802	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	36450663	12A2p6	cell line	sgMsh2	36450663	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	159	0	0	NA	exonic	Stfa3	synonymous SNV	Stfa3:NM_025288:exon3:c.A258G:p.K86K	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9901373	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr16	36722333	12A2p6	cell line	sgMsh2	36722333	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	18	0	0	NA	exonic	Ildr1	nonsynonymous SNV	"Ildr1:NM_001285791:exon6:c.A1094T:p.E365V,Ildr1:NM_001285788:exon7:c.A1226T:p.E409V,Ildr1:NM_134109:exon7:c.A1226T:p.E409V"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.0981288	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	36918198	12A2p6	cell line	sgMsh2	36918198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	54	0	0	NA	exonic	Golgb1	stopgain	Golgb1:NM_030035:exon14:c.A7021T:p.K2341X	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.674297215	1	0.5928539	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	37815729	12A2p6	cell line	sgMsh2	37815729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	193	0	0	NA	exonic	Fstl1	synonymous SNV	Fstl1:NM_008047:exon3:c.G81A:p.K27K	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.9652838	AGA	synonymous	NA	NA	NA	NA
22-2_par	chr16	38602460	12A2p6	cell line	sgMsh2	38602460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	150	0	0	NA	exonic	Arhgap31	synonymous SNV	Arhgap31:NM_020260:exon12:c.G3243A:p.E1081E	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.890072323	1	0.9999999	ACT	synonymous	NA	NA	NA	NA
22-2_par	chr16	43610824	12A2p6	cell line	sgMsh2	43610824	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.1	46	0	0	NA	exonic	Zbtb20	nonsynonymous SNV	"Zbtb20:NM_181058:exon6:c.A1478T:p.H493L,Zbtb20:NM_019778:exon8:c.A1697T:p.H566L,Zbtb20:NM_001285805:exon10:c.A1697T:p.H566L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.8599919	CAC	nonsynonymous	CACAG	11	CACAGCACAGC	NA
22-2_par	chr16	43659460	12A2p6	cell line	sgMsh2	43659460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	145	0	0	NA	exonic	Tigit	synonymous SNV	Tigit:NM_001146325:exon3:c.A471G:p.G157G	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9967456	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr16	44111516	12A2p6	cell line	sgMsh2	44111516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	68	0	0	NA	exonic	Atp6v1a	nonsynonymous SNV	"Atp6v1a:NM_001358203:exon4:c.A408G:p.I136M,Atp6v1a:NM_001358204:exon4:c.A408G:p.I136M,Atp6v1a:NM_007508:exon4:c.A408G:p.I136M"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.845119176	1	0.9961533	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	45186233	12A2p6	cell line	sgMsh2	45186233	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	138	0	0	NA	exonic	Atg3	nonsynonymous SNV	"Atg3:NM_001356366:exon10:c.A601G:p.M201V,Atg3:NM_026402:exon11:c.A862G:p.M288V"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.9641208	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	48980946	12A2p6	cell line	sgMsh2	48980946	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	203	0	0	NA	exonic	Dzip3	nonsynonymous SNV	"Dzip3:NM_001110017:exon4:c.A214G:p.N72D,Dzip3:NM_001356425:exon4:c.A214G:p.N72D,Dzip3:NM_027341:exon4:c.A214G:p.N72D"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9993104	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	55248373	12A2p6	cell line	sgMsh2	55248373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	129	0	0	NA	exonic	Zpld1	nonsynonymous SNV	Zpld1:NM_178720:exon5:c.T374C:p.V125A	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9948704	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	57312713	12A2p6	cell line	sgMsh2	57312713	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	175	0	0	NA	exonic	Cmss1	synonymous SNV	Cmss1:NM_025599:exon5:c.C351T:p.S117S	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.7368268	AGG	synonymous	NA	NA	NA	NA
22-2_par	chr16	62846713	12A2p6	cell line	sgMsh2	62846713	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	69	0	0	NA	exonic	Arl13b	synonymous SNV	Arl13b:NM_026577:exon1:c.T31C:p.L11L	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9501909	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr16	77076461	12A2p6	cell line	sgMsh2	77076461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	129	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon13:c.T1406C:p.V469A	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.9237384	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	77114911	12A2p6	cell line	sgMsh2	77114911	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	103	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2827C:p.F943L	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.8493084	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	77114996	12A2p6	cell line	sgMsh2	77114996	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	110	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2912A:p.V971E	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.958308	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	81527041	12A2p6	cell line	sgMsh2	81527041	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	62	0	0	NA	exonic	Ncam2	synonymous SNV	"Ncam2:NM_001113208:exon12:c.T1572C:p.G524G,Ncam2:NM_010954:exon12:c.T1572C:p.G524G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.714755048	1	0.8298861	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr16	84816299	12A2p6	cell line	sgMsh2	84816299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	382	0	0	NA	exonic	Jam2	nonsynonymous SNV	Jam2:NM_023844:exon7:c.T731C:p.V244A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9999936	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	85899342	12A2p6	cell line	sgMsh2	85899342	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	66	0	0	NA	exonic	Adamts5	nonsynonymous SNV	Adamts5:NM_011782:exon1:c.A926G:p.N309S	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	6.97E-05	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	87397861	12A2p6	cell line	sgMsh2	87397861	C	T	SNV	Mutect2;Vardict	2	0.033	183	0	0	NA	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon23:c.G4149A:p.L1383L	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.148345387	3	0.9999982	GCA	synonymous	NA	NA	NA	NA
22-2_par	chr16	88611619	12A2p6	cell line	sgMsh2	88611619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	169	0	0	NA	exonic	Krtap24-1	nonsynonymous SNV	Krtap24-1:NM_001163141:exon1:c.T618G:p.N206K	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	1	0.6969884	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	90229418	12A2p6	cell line	sgMsh2	90229418	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	77	0	0	NA	exonic	Scaf4	synonymous SNV	"Scaf4:NM_001346799:exon20:c.A3432G:p.S1144S,Scaf4:NM_001358402:exon20:c.A3435G:p.S1145S,Scaf4:NM_178923:exon20:c.A3510G:p.S1170S"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.6605275	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr16	90248596	12A2p6	cell line	sgMsh2	90248596	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	46	0	0	NA	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon12:c.G1613A:p.R538Q,Scaf4:NM_001358402:exon12:c.G1616A:p.R539Q,Scaf4:NM_178923:exon12:c.G1625A:p.R542Q"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9986269	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr16	91495255	12A2p6	cell line	sgMsh2	91495255	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	112	0	0	NA	exonic	Ifnar1	synonymous SNV	Ifnar1:NM_010508:exon4:c.T483C:p.P161P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9606469	CTT	synonymous	CCTT	9	CCTTCCTTC	NA
22-2_par	chr17	3521753	12A2p6	cell line	sgMsh2	3521753	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	107	0	0	NA	exonic	Tfb1m	nonsynonymous SNV	Tfb1m:NM_146074:exon6:c.A686G:p.H229R	17qA1	chr17-3079405-6442865	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.822642602	1	0.9996854	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	12418696	12A2p6	cell line	sgMsh2	12418696	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	86	0	0	NA	exonic	Plg	nonsynonymous SNV	Plg:NM_008877:exon18:c.T2191C:p.C731R	17qA1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.6686818	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	13226226	12A2p6	cell line	sgMsh2	13226226	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	443	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T689C:p.L230P	17qA1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	13226957	12A2p6	cell line	sgMsh2	13226957	A	G	SNV	Mutect2;Vardict	2	0.036	354	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A1420G:p.S474G	17qA1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	1.04E-09	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	14679724	12A2p6	cell line	sgMsh2	14679724	T	C	SNV	Mutect2;Vardict	2	0.054	99	0	0	NA	exonic	Thbs2	synonymous SNV	Thbs2:NM_011581:exon12:c.A1890G:p.Q630Q	17qA2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9740271	GTT	synonymous	GGTT	8	GGTTGGTT	NA
22-2_par	chr17	18929602	12A2p6	cell line	sgMsh2	18929602	A	G	SNV	Mutect2;Vardict	2	0.03	362	0	0	NA	exonic	Vmn2r97	synonymous SNV	"Vmn2r97:NM_001104549:exon3:c.A1251G:p.Q417Q,Vmn2r97:NM_001385078:exon3:c.A1251G:p.Q417Q"	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.134859443	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr17	18947680	12A2p6	cell line	sgMsh2	18947680	A	G	SNV	Mutect2;MuSe;Vardict	3	0.051	656	0	0	NA	exonic	Vmn2r97	nonsynonymous SNV	"Vmn2r97:NM_001104549:exon6:c.A2195G:p.E732G,Vmn2r97:NM_001385078:exon6:c.A2183G:p.E728G"	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	19522425	12A2p6	cell line	sgMsh2	19522425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	235	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon3:c.A1060G:p.K354E	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.7831677	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	19523431	12A2p6	cell line	sgMsh2	19523431	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	55	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon4:c.T1355G:p.I452S	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.7766333	ATT	nonsynonymous	ATTG	8	ATTGATTG	NA
22-2_par	chr17	20624539	12A2p6	cell line	sgMsh2	20624539	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	325	0	0	NA	exonic	Fpr-rs3	synonymous SNV	Fpr-rs3:NM_008040:exon1:c.T339C:p.V113V	17qA3.2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	8.11E-09	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr17	23360046	12A2p6	cell line	sgMsh2	23360046	G	A	SNV	Mutect2;Vardict	2	0.048	508	0	0	NA	exonic	Vmn2r115	nonsynonymous SNV	Vmn2r115:NM_001104579:exon6:c.G2492A:p.C831Y	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	1.03E-09	TGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	23401142	12A2p6	cell line	sgMsh2	23401142	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	288	0	0	NA	exonic	Vmn2r116	nonsynonymous SNV	Vmn2r116:NM_001104580:exon6:c.A1849G:p.K617E	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9999999	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	23668155	12A2p6	cell line	sgMsh2	23668155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	28	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon10:c.A1415C:p.E472A	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.8955083	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	23872821	12A2p6	cell line	sgMsh2	23872821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	107	0	0	NA	exonic	Prss21	synonymous SNV	Prss21:NM_020487:exon6:c.C762T:p.C254C	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999999	GCG	synonymous	NA	NA	NA	NA
22-2_par	chr17	24445127	12A2p6	cell line	sgMsh2	24445127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	52	0	0	NA	exonic	E4f1	nonsynonymous SNV	"E4f1:NM_001301784:exon10:c.A1585G:p.T529A,E4f1:NM_001355708:exon10:c.A1105G:p.T369A,E4f1:NM_007893:exon10:c.A1582G:p.T528A"	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.804661343	1	0.9614635	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	24505198	12A2p6	cell line	sgMsh2	24505198	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.102	45	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.C2746T:p.R916W,Caskin1:NM_027937:exon18:c.C2959T:p.R987W"	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.8682425	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	24568729	12A2p6	cell line	sgMsh2	24568729	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	83	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon10:c.T1950C:p.P650P	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.9233221	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	25309693	12A2p6	cell line	sgMsh2	25309693	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	113	0	0	NA	exonic	Prss28	synonymous SNV	Prss28:NM_053259:exon3:c.T108C:p.C36C	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.687783159	1	0.8893617	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr17	25742673	12A2p6	cell line	sgMsh2	25742673	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	111	0	0	NA	exonic	Mslnl	nonsynonymous SNV	Mslnl:NM_177822:exon5:c.A302G:p.N101S	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7774158	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	25786623	12A2p6	cell line	sgMsh2	25786623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	140	0	0	NA	exonic	Ccdc78	nonsynonymous SNV	Ccdc78:NM_001165929:exon1:c.A8G:p.Q3R	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	27025456	12A2p6	cell line	sgMsh2	27025456	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	112	0	0	NA	exonic	Ggnbp1	frameshift deletion	Ggnbp1:NM_001251881:exon2:c.161delA:p.R55Gfs*150	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	GAA	frameshift	AGAGA	11	AGAGAAGAGAA	-1
22-2_par	chr17	27886966	12A2p6	cell line	sgMsh2	27886966	T	G	SNV	Mutect2;Vardict	2	0.084	51	0	0	NA	exonic	Uhrf1bp1	nonsynonymous SNV	Uhrf1bp1:NM_001080769:exon14:c.T2465G:p.L822R	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.6789137	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	28058777	12A2p6	cell line	sgMsh2	28058777	T	C	SNV	Mutect2;Vardict	2	0.06	89	0	0	NA	exonic	Anks1	synonymous SNV	"Anks1:NM_001286041:exon23:c.T3318C:p.C1106C,Anks1:NM_001286040:exon24:c.T3381C:p.C1127C"	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9133729	GTC	synonymous	TGTCAC	12	TGTCACTGTCAC	NA
22-2_par	chr17	30959281	12A2p6	cell line	sgMsh2	30959281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	82	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon2:c.G230T:p.R77L	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.999995	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	31002869	12A2p6	cell line	sgMsh2	31002869	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	58	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon20:c.G3844T:p.G1282W	17qA3.3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8661266	GGG	nonsynonymous	G	5	GGGGG	NA
22-2_par	chr17	31527927	12A2p6	cell line	sgMsh2	31527927	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.135	47	0	0	NA	exonic	Ndufv3	nonsynonymous SNV	Ndufv3:NM_030087:exon3:c.G790A:p.E264K	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.7438485	AGA	nonsynonymous	GAAG	8	GAAGGAAG	NA
22-2_par	chr17	31652525	12A2p6	cell line	sgMsh2	31652525	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	144	0	0	NA	exonic	U2af1	nonsynonymous SNV	U2af1:NM_001163769:exon3:c.C176T:p.A59V	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.8857409	TGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	32144597	12A2p6	cell line	sgMsh2	32144597	T	C	SNV	Mutect2;Vardict	2	0.07	80	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon22:c.A3491G:p.D1164G	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.6843098	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	32377221	12A2p6	cell line	sgMsh2	32377221	A	G	SNV	Mutect2;Vardict	2	0.154	30	0	0	NA	exonic	Wiz	nonsynonymous SNV	Wiz:NM_001372227:exon3:c.T1538C:p.V513A	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.692278474	1	0.008325334	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	33104837	12A2p6	cell line	sgMsh2	33104837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	133	0	0	NA	exonic	Zfp563	synonymous SNV	Zfp563:NM_001024950:exon4:c.A405G:p.V135V	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.9995151	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr17	33242024	12A2p6	cell line	sgMsh2	33242024	T	C	SNV	Mutect2;Vardict	2	0.065	152	0	0	NA	exonic	Zfp955a	nonsynonymous SNV	Zfp955a:NM_029952:exon4:c.A1133G:p.H378R	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9471911	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	33433204	12A2p6	cell line	sgMsh2	33433204	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.105	48	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.T237C:p.G79G	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.8985701	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	33545399	12A2p6	cell line	sgMsh2	33545399	C	T	SNV	Mutect2;Vardict	2	0.097	46	0	0	NA	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon14:c.C799T:p.P267S,Adamts10:NM_001329143:exon15:c.C799T:p.P267S,Adamts10:NM_001329151:exon15:c.C568T:p.P190S,Adamts10:NM_001329152:exon15:c.C568T:p.P190S,Adamts10:NM_001329153:exon15:c.C562T:p.P188S,Adamts10:NM_001329154:exon15:c.C562T:p.P188S,Adamts10:NM_001329202:exon16:c.C562T:p.P188S,Adamts10:NM_001329203:exon16:c.C892T:p.P298S,Adamts10:NM_172619:exon16:c.C1996T:p.P666S"	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.8354438	CCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	33645148	12A2p6	cell line	sgMsh2	33645148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	107	0	0	NA	exonic	Pram1	nonsynonymous SNV	Pram1:NM_001002842:exon7:c.A1841G:p.H614R	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.917044212	1	0.9999957	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	34568200	12A2p6	cell line	sgMsh2	34568200	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	139	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon5:c.A827C:p.D276A	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6457799	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	34611691	12A2p6	cell line	sgMsh2	34611691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	94	0	0	NA	exonic	Agpat1	synonymous SNV	"Agpat1:NM_001163379:exon5:c.A588G:p.V196V,Agpat1:NM_018862:exon5:c.A588G:p.V196V"	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.741726936	1	0.977799	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr17	35149522	12A2p6	cell line	sgMsh2	35149522	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	118	0	0	NA	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon30:c.C6321T:p.D2107D,Prrc2a:NM_020027:exon30:c.C6324T:p.D2108D"	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.8351932	GGT	synonymous	NA	NA	NA	NA
22-2_par	chr17	35881636	12A2p6	cell line	sgMsh2	35881636	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	43	0	0	NA	exonic	Dhx16	nonsynonymous SNV	Dhx16:NM_026987:exon3:c.T459A:p.S153R	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.8838841	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	36547575	12A2p6	cell line	sgMsh2	36547575	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	150	0	0	NA	exonic	H2-M11	nonsynonymous SNV	H2-M11:NM_177635:exon2:c.A260G:p.N87S	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.8643652	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	37590157	12A2p6	cell line	sgMsh2	37590157	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	482	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A195T:p.Q65H	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.741726936	1	1.32E-09	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	37659548	12A2p6	cell line	sgMsh2	37659548	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	128	0	0	NA	exonic	Olfr117	nonsynonymous SNV	Olfr117:NM_207155:exon1:c.A784G:p.N262D	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6854636	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	38082429	12A2p6	cell line	sgMsh2	38082429	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	120	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T548C:p.V183A	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.933399	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	38149077	12A2p6	cell line	sgMsh2	38149077	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	176	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.C488A:p.T163K	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.8977556	ACA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	38208708	12A2p6	cell line	sgMsh2	38208708	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	187	0	0	NA	exonic	Olfr135	synonymous SNV	Olfr135:NM_146332:exon1:c.C462A:p.S154S	17qB1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.9999838	CCT	synonymous	NA	NA	NA	NA
22-2_par	chr17	40938529	12A2p6	cell line	sgMsh2	40938529	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	54	0	0	NA	exonic	Mmut	synonymous SNV	Mmut:NM_008650:exon3:c.T394C:p.L132L	17qB2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.9296205	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	43440030	12A2p6	cell line	sgMsh2	43440030	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	105	0	0	NA	exonic	Adgrf5	synonymous SNV	"Adgrf5:NM_001081178:exon12:c.T1485C:p.S495S,Adgrf5:NM_001357332:exon12:c.T1539C:p.S513S"	17qB3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.8467849	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr17	46301716	12A2p6	cell line	sgMsh2	46301716	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	86	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon5:c.A344G:p.Y115C,Dlk2:NM_001286028:exon5:c.A344G:p.Y115C"	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	5.51E-06	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	46446704	12A2p6	cell line	sgMsh2	46446704	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	90	0	0	NA	exonic	Ttbk1	synonymous SNV	Ttbk1:NM_001162864:exon14:c.A3003G:p.E1001E	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.8380128	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	46685543	12A2p6	cell line	sgMsh2	46685543	T	A	SNV	Mutect2;Strelka2	2	0.083	118	0	0	NA	exonic	Ppp2r5d	nonsynonymous SNV	"Ppp2r5d:NM_001357684:exon10:c.A1206T:p.K402N,Ppp2r5d:NM_009358:exon10:c.A1203T:p.K401N"	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7889379	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	46685545	12A2p6	cell line	sgMsh2	46685545	T	C	SNV	Mutect2;Strelka2	2	0.084	118	0	0	NA	exonic	Ppp2r5d	nonsynonymous SNV	"Ppp2r5d:NM_001357684:exon10:c.A1204G:p.K402E,Ppp2r5d:NM_009358:exon10:c.A1201G:p.K401E"	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.8196709	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	49435230	12A2p6	cell line	sgMsh2	49435230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	116	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon3:c.C386T:p.P129L,Mocs1:NM_028464:exon3:c.C386T:p.P129L"	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.997956	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	53401448	12A2p6	cell line	sgMsh2	53401448	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	55	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon11:c.T2193C:p.A731A	17qC	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.8747197	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr17	56112375	12A2p6	cell line	sgMsh2	56112375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.214	15	0	0	NA	exonic	Plin5	nonsynonymous SNV	"Plin5:NM_001077348:exon8:c.A1046G:p.H349R,Plin5:NM_025874:exon9:c.A1046G:p.H349R"	17qD	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.96199736	1	0.8144389	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	56696782	12A2p6	cell line	sgMsh2	56696782	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	134	0	0	NA	exonic	Ranbp3	synonymous SNV	"Ranbp3:NM_001252467:exon4:c.T180C:p.T60T,Ranbp3:NM_027933:exon4:c.T180C:p.T60T,Ranbp3:NM_001252466:exon5:c.T381C:p.T127T"	17qD	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.8650591	CTC	synonymous	ACTC	9	ACTCACTCA	NA
22-2_par	chr17	56767798	12A2p6	cell line	sgMsh2	56767798	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	97	0	0	NA	exonic	Dus3l	frameshift deletion	"Dus3l:NM_001360405:exon5:c.919delT:p.R308Afs*10,Dus3l:NM_144858:exon5:c.919delT:p.R308Afs*10"	17qD	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-2_par	chr17	56850146	12A2p6	cell line	sgMsh2	56850146	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	53	0	0	NA	exonic	Acsbg2	frameshift deletion	Acsbg2:NM_001039114:exon9:c.977delA:p.K326Rfs*15	17qD	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-2_par	chr17	66920182	12A2p6	cell line	sgMsh2	66920182	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	159	0	0	NA	exonic	Ptprm	synonymous SNV	"Ptprm:NM_001357625:exon12:c.A1971C:p.S657S,Ptprm:NM_008984:exon12:c.A1971C:p.S657S"	17qE1.1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9901373	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr17	67632072	12A2p6	cell line	sgMsh2	67632072	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	92	0	0	NA	exonic	Lrrc30	nonsynonymous SNV	Lrrc30:NM_001033340:exon1:c.A512G:p.N171S	17qE1.1	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.7718679	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	74017771	12A2p6	cell line	sgMsh2	74017771	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	130	0	0	NA	exonic	Srd5a2	nonsynonymous SNV	Srd5a2:NM_053188:exon5:c.T700C:p.F234L	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8821308	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	74410415	12A2p6	cell line	sgMsh2	74410415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	176	0	0	NA	exonic	Slc30a6	synonymous SNV	"Slc30a6:NM_001252478:exon8:c.T498C:p.A166A,Slc30a6:NM_144798:exon8:c.T483C:p.A161A"	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.9999998	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	74622970	12A2p6	cell line	sgMsh2	74622970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	67	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon35:c.A7172G:p.E2391G	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9660549	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	74642318	12A2p6	cell line	sgMsh2	74642318	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	230	0	0	NA	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon47:c.T9307C:p.L3103L	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.9418889	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr17	74647796	12A2p6	cell line	sgMsh2	74647796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	97	0	0	NA	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon52:c.T10359C:p.G3453G	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9928274	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr17	74743009	12A2p6	cell line	sgMsh2	74743009	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	107	0	0	NA	exonic	Ttc27	stopgain	Ttc27:NM_152817:exon7:c.T909A:p.C303X	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9966145	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	78313212	12A2p6	cell line	sgMsh2	78313212	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.08	120	0	0	NA	exonic	Crim1	frameshift deletion	Crim1:NM_015800:exon6:c.1080delG:p.G362Vfs*12	17qE2	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	NA	NA	AGG	frameshift	G	5	GGGGG	-1
22-2_par	chr17	78975415	12A2p6	cell line	sgMsh2	78975415	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	112	0	0	NA	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon5:c.C585G:p.R195R,Prkd3:NM_001171004:exon6:c.C870G:p.R290R,Prkd3:NM_029239:exon6:c.C870G:p.R290R"	17qE3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8468229	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr17	81026621	12A2p6	cell line	sgMsh2	81026621	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.178	69	0	0	NA	exonic	Thumpd2	nonsynonymous SNV	Thumpd2:NM_028138:exon10:c.A1537G:p.T513A	17qE3	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.9870192	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	83454455	12A2p6	cell line	sgMsh2	83454455	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	169	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon12:c.T1241A:p.L414H,Eml4:NM_001114362:exon13:c.T1370A:p.L457H,Eml4:NM_001357886:exon13:c.T1274A:p.L425H,Eml4:NM_001379373:exon14:c.T1544A:p.L515H,Eml4:NM_001379374:exon14:c.T1403A:p.L468H,Eml4:NM_001114361:exon15:c.T1577A:p.L526H,Eml4:NM_001286567:exon15:c.T1436A:p.L479H"	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9968283	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	83781923	12A2p6	cell line	sgMsh2	83781923	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	314	0	0	NA	exonic	Mta3	nonsynonymous SNV	"Mta3:NM_001171052:exon10:c.A913T:p.S305C,Mta3:NM_001171053:exon10:c.A913T:p.S305C,Mta3:NM_001171054:exon10:c.A913T:p.S305C,Mta3:NM_001379388:exon10:c.A913T:p.S305C,Mta3:NM_001379389:exon10:c.A913T:p.S305C,Mta3:NM_001379390:exon10:c.A913T:p.S305C,Mta3:NM_001379391:exon10:c.A913T:p.S305C,Mta3:NM_001379392:exon10:c.A913T:p.S305C,Mta3:NM_054082:exon10:c.A910T:p.S304C"	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	2.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	84643015	12A2p6	cell line	sgMsh2	84643015	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	129	0	0	NA	exonic	Dync2li1	nonsynonymous SNV	Dync2li1:NM_172256:exon6:c.A464C:p.E155A	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.7705389	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	85023079	12A2p6	cell line	sgMsh2	85023079	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	204	0	0	NA	exonic	Ppm1b	stoploss	Ppm1b:NM_001159498:exon7:c.A1182G:p.X394W	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9996619	GAG	nonsynonymous	AGTA	8	AGTAAGTA	NA
22-2_par	chr17	85621980	12A2p6	cell line	sgMsh2	85621980	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.214	17	0	0	NA	exonic	Six3	synonymous SNV	Six3:NM_011381:exon1:c.C741T:p.T247T	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.96199736	1	0.854352	CCC	synonymous	C	5	CCCCC	NA
22-2_par	chr17	85622016	12A2p6	cell line	sgMsh2	85622016	A	G	SNV	Mutect2;Vardict	2	0.2	17	0	0	NA	exonic	Six3	synonymous SNV	Six3:NM_011381:exon1:c.A777G:p.R259R	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.7869861	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr17	86918306	12A2p6	cell line	sgMsh2	86918306	A	C	SNV	Mutect2;Vardict	2	0.108	47	0	0	NA	exonic	Tmem247	nonsynonymous SNV	"Tmem247:NM_001277980:exon2:c.A173C:p.E58A,Tmem247:NM_030104:exon2:c.A173C:p.E58A"	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9043783	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr17	87718633	12A2p6	cell line	sgMsh2	87718640	CGTCAGAC	-	Deletion	Mutect2;Vardict	2	0.333	17	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2038_2045del:p.Q681Gfs*14	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	TCG	frameshift	NA	NA	NA	-8
22-2_par	chr17	87718638	12A2p6	cell line	sgMsh2	87718638	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.826	12	0	0	NA	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
22-2_par	chr17	91088023	12A2p6	cell line	sgMsh2	91088023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	28	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon1:c.C704T:p.S235F,Nrxn1:NM_020252:exon2:c.C704T:p.S235F,Nrxn1:NM_177284:exon2:c.C704T:p.S235F"	17qE5	chr17-8169318-94740433	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9776333	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	5059330	12A2p6	cell line	sgMsh2	5059330	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	146	0	0	NA	exonic	Svil	nonsynonymous SNV	"Svil:NM_001347449:exon6:c.C968G:p.T323R,Svil:NM_153153:exon9:c.C2084G:p.T695R"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9854851	ACA	nonsynonymous	CA	10	CACACACACA	NA
22-2_par	chr18	7000599	12A2p6	cell line	sgMsh2	7000599	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	146	0	0	NA	exonic	Mkx	frameshift deletion	Mkx:NM_177595:exon3:c.342delA:p.V115Cfs*13	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	NA	NA	CTA	frameshift	NA	NA	NA	-1
22-2_par	chr18	12189255	12A2p6	cell line	sgMsh2	12189255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	110	0	0	NA	exonic	Rmc1	synonymous SNV	Rmc1:NM_029623:exon19:c.T1764C:p.H588H	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9944775	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr18	20088394	12A2p6	cell line	sgMsh2	20088394	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	183	0	0	NA	exonic	Dsc1	nonsynonymous SNV	"Dsc1:NM_001291804:exon13:c.A2023G:p.M675V,Dsc1:NM_013504:exon13:c.A2023G:p.M675V"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9995728	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	24506947	12A2p6	cell line	sgMsh2	24506947	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	144	0	0	NA	exonic	Rprd1a	nonsynonymous SNV	"Rprd1a:NM_001360807:exon6:c.T676C:p.Y226H,Rprd1a:NM_144861:exon6:c.T676C:p.Y226H"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9940151	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	31444203	12A2p6	cell line	sgMsh2	31444204	AG	-	Deletion	Strelka2;Vardict	2	0.2245	49	0	0	NA	exonic	Syt4	frameshift deletion	Syt4:NM_009308:exon2:c.96_97del:p.F33Cfs*24	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	AAG	frameshift	AG	9	AGAGAGAGA	-2
22-2_par	chr18	34312273	12A2p6	cell line	sgMsh2	34312273	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	78	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2044G:p.M682V,Apc:NM_007462:exon16:c.A2221G:p.M741V,Apc:NM_001360980:exon17:c.A2275G:p.M759V"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	9.08E-05	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	34314401	12A2p6	cell line	sgMsh2	34314401	A	G	SNV	Mutect2;Vardict	2	0.083	56	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4172G:p.E1391G,Apc:NM_007462:exon16:c.A4349G:p.E1450G,Apc:NM_001360980:exon17:c.A4403G:p.E1468G"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.000792178	GAG	nonsynonymous	AG	8	AGAGAGAG	NA
22-2_par	chr18	34604877	12A2p6	cell line	sgMsh2	34604877	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	177	0	0	NA	exonic	Brd8	nonsynonymous SNV	"Brd8:NM_001289606:exon16:c.T2134G:p.W712G,Brd8:NM_001289607:exon16:c.T2143G:p.W715G,Brd8:NM_001361136:exon17:c.T2353G:p.W785G,Brd8:NM_030147:exon17:c.T2353G:p.W785G"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	0.9997701	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	34909207	12A2p6	cell line	sgMsh2	34909207	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	67	0	0	NA	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon7:c.A798T:p.Q266H	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999482	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	34938608	12A2p6	cell line	sgMsh2	34938608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	90	0	0	NA	exonic	Hspa9	synonymous SNV	Hspa9:NM_010481:exon16:c.A1938G:p.K646K	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999986	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr18	35213116	12A2p6	cell line	sgMsh2	35213116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	94	0	0	NA	exonic	Lrrtm2	nonsynonymous SNV	Lrrtm2:NM_178005:exon2:c.A1132G:p.T378A	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.975483304	1	0.999998	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	36006639	12A2p6	cell line	sgMsh2	36006639	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.157	43	0	0	NA	exonic	Psd2	frameshift insertion	"Psd2:NM_001289602:exon12:c.1727dupG:p.A577Gfs*2,Psd2:NM_028707:exon12:c.1736dupG:p.A580Gfs*2"	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.705764418	NA	NA	CAG	frameshift	NA	NA	NA	1
22-2_par	chr18	36954577	12A2p6	cell line	sgMsh2	36954577	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	83	0	0	NA	exonic	Gm37013;Pcdha4	nonsynonymous SNV	"Gm37013:NM_001174154:exon1:c.T1812A:p.N604K,Pcdha4:NM_007766:exon1:c.T1812A:p.N604K"	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.95300673	1	0.9999777	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37021175	12A2p6	cell line	sgMsh2	37021175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	51	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T946C:p.Y316H	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.917044212	1	0.9962238	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37146108	12A2p6	cell line	sgMsh2	37146108	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	120	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.G2140A:p.V714M	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9920613	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37302618	12A2p6	cell line	sgMsh2	37302618	C	A	SNV	Mutect2;Vardict	2	0.028	176	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.C1636A:p.L546M	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.125868813	3	0.9999993	TCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37402817	12A2p6	cell line	sgMsh2	37402817	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	155	0	0	NA	exonic	Pcdhb9	synonymous SNV	Pcdhb9:NM_053134:exon1:c.C1863T:p.V621V	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9695597	TCA	synonymous	NA	NA	NA	NA
22-2_par	chr18	37413731	12A2p6	cell line	sgMsh2	37413731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	245	0	0	NA	exonic	Pcdhb10	nonsynonymous SNV	Pcdhb10:NM_053135:exon1:c.A1859G:p.N620S	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.9999953	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37485770	12A2p6	cell line	sgMsh2	37485770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	71	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.G612T:p.E204D	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9722888	AGG	nonsynonymous	GAG	8	GAGGAGGA	NA
22-2_par	chr18	37519846	12A2p6	cell line	sgMsh2	37519846	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	200	0	0	NA	exonic	Pcdhb22	nonsynonymous SNV	Pcdhb22:NM_053147:exon1:c.A1366T:p.M456L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9999817	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37733130	12A2p6	cell line	sgMsh2	37733130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	70	0	0	NA	exonic	Pcdhgb5	synonymous SNV	Pcdhgb5:NM_033577:exon1:c.A1977G:p.V659V	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.827137917	1	0.9945332	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr18	37974113	12A2p6	cell line	sgMsh2	37974113	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	84	0	0	NA	exonic	Arap3	nonsynonymous SNV	"Arap3:NM_001205336:exon32:c.T3892A:p.S1298T,Arap3:NM_139206:exon32:c.T4126A:p.S1376T"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.9252931	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	37980316	12A2p6	cell line	sgMsh2	37980316	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.114	47	0	0	NA	exonic	Arap3	nonsynonymous SNV	"Arap3:NM_001205336:exon22:c.G2887A:p.A963T,Arap3:NM_139206:exon22:c.G3121A:p.A1041T"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	2	0.9102513	GCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	42235504	12A2p6	cell line	sgMsh2	42235504	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	239	0	0	NA	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon13:c.T1271C:p.M424T	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9995938	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	42241950	12A2p6	cell line	sgMsh2	42241950	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	117	0	0	NA	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon10:c.A1024G:p.T342A	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9868112	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	49698401	12A2p6	cell line	sgMsh2	49698401	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	214	0	0	NA	exonic	Dtwd2	nonsynonymous SNV	"Dtwd2:NM_001170960:exon4:c.C538A:p.P180T,Dtwd2:NM_026854:exon6:c.C826A:p.P276T"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.7854805	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	54898553	12A2p6	cell line	sgMsh2	54898553	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	51	0	0	NA	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon4:c.A1036G:p.T346A,Zfp608:NM_175751:exon5:c.A2314G:p.T772A"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9241543	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	56531752	12A2p6	cell line	sgMsh2	56531752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	174	0	0	NA	exonic	Aldh7a1	synonymous SNV	"Aldh7a1:NM_138600:exon15:c.T1374C:p.S458S,Aldh7a1:NM_001127338:exon17:c.T1290C:p.S430S"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.570904975	2	0.9939269	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr18	58076003	12A2p6	cell line	sgMsh2	58076003	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	79	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon25:c.A3299C:p.D1100A	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9405478	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	58671274	12A2p6	cell line	sgMsh2	58671274	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	119	0	0	NA	exonic	Isoc1	nonsynonymous SNV	Isoc1:NM_025478:exon2:c.T373C:p.F125L	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9899403	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	60707816	12A2p6	cell line	sgMsh2	60707816	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	78	0	0	NA	exonic	Ndst1	nonsynonymous SNV	"Ndst1:NM_001348100:exon3:c.A793G:p.T265A,Ndst1:NM_001348101:exon3:c.A793G:p.T265A,Ndst1:NM_001348102:exon3:c.A793G:p.T265A,Ndst1:NM_001348103:exon3:c.A793G:p.T265A,Ndst1:NM_001348146:exon3:c.A793G:p.T265A,Ndst1:NM_008306:exon3:c.A793G:p.T265A"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5705928	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	60916922	12A2p6	cell line	sgMsh2	60916922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	81	0	0	NA	exonic	Arsi	synonymous SNV	Arsi:NM_001038499:exon2:c.T876C:p.I292I	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.804661343	1	0.9952376	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr18	61157469	12A2p6	cell line	sgMsh2	61157469	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	98	0	0	NA	exonic	Hmgxb3	nonsynonymous SNV	"Hmgxb3:NM_178277:exon7:c.A1331G:p.K444R,Hmgxb3:NM_134134:exon8:c.A1235G:p.K412R"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5774867	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	61991204	12A2p6	cell line	sgMsh2	61991204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	140	0	0	NA	exonic	Sh3tc2	nonsynonymous SNV	Sh3tc2:NM_172628:exon12:c.G2942A:p.C981Y	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9986494	TGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	62991833	12A2p6	cell line	sgMsh2	62991833	A	-	Deletion	Strelka2;Vardict	2	0.1569	51	0	0	NA	exonic	Napg	frameshift deletion	Napg:NM_028017:exon9:c.539delA:p.N182Ifs*20	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.705314887	NA	NA	GAA	frameshift	AGAA	9	AGAAAGAAA	-1
22-2_par	chr18	64531509	12A2p6	cell line	sgMsh2	64531509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	44	0	0	NA	exonic	Atp8b1	nonsynonymous SNV	Atp8b1:NM_001001488:exon28:c.G3587A:p.S1196N	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9981245	GCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	65195972	12A2p6	cell line	sgMsh2	65195972	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	187	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon22:c.A1883C:p.D628A,Nedd4l:NM_001114386:exon23:c.A2246C:p.D749A"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	0.9999966	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	66859059	12A2p6	cell line	sgMsh2	66859059	A	G	SNV	Mutect2;Vardict	2	0.083	57	0	0	NA	exonic	Mc4r	synonymous SNV	Mc4r:NM_016977:exon1:c.T982C:p.L328L	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.000712113	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr18	67819036	12A2p6	cell line	sgMsh2	67819036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	224	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon11:c.T1281C:p.G427G	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9910602	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr18	70468271	12A2p6	cell line	sgMsh2	70468271	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	63	0	0	NA	exonic	4930503L19Rik	nonsynonymous SNV	"4930503L19Rik:NM_001379430:exon4:c.A485G:p.N162S,4930503L19Rik:NM_001379431:exon4:c.A539G:p.N180S,4930503L19Rik:NM_001379432:exon4:c.A539G:p.N180S,4930503L19Rik:NM_001379433:exon4:c.A539G:p.N180S,4930503L19Rik:NM_172967:exon4:c.A539G:p.N180S"	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9612527	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	75002815	12A2p6	cell line	sgMsh2	75002815	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	100	0	0	NA	exonic	Rpl17	nonsynonymous SNV	Rpl17:NM_001002239:exon6:c.T470A:p.V157D	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	1	0.9962802	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr18	77097485	12A2p6	cell line	sgMsh2	77097485	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	175	0	0	NA	exonic	Pias2	synonymous SNV	"Pias2:NM_001164167:exon2:c.T261G:p.G87G,Pias2:NM_001164168:exon2:c.T240G:p.G80G,Pias2:NM_001164169:exon2:c.T261G:p.G87G,Pias2:NM_001164170:exon2:c.T240G:p.G80G,Pias2:NM_008602:exon2:c.T261G:p.G87G"	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9989212	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr18	89207067	12A2p6	cell line	sgMsh2	89207067	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	229	0	0	NA	exonic	Cd226	synonymous SNV	Cd226:NM_178687:exon3:c.T87C:p.L29L	18qE4	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr19	3947100	12A2p6	cell line	sgMsh2	3947100	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	91	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	"Unc93b1:NM_001161428:exon9:c.A1246G:p.T416A,Unc93b1:NM_019449:exon10:c.A1520G:p.Y507C"	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	4833504	12A2p6	cell line	sgMsh2	4833504	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	65	0	0	NA	exonic	Ccs	nonsynonymous SNV	Ccs:NM_016892:exon4:c.G265T:p.A89S	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GCT	nonsynonymous	CTG	8	CTGCTGCT	NA
22-2_par	chr19	4867622	12A2p6	cell line	sgMsh2	4867622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	89	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon11:c.G1192A:p.E398K	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	5339469	12A2p6	cell line	sgMsh2	5339469	A	G	SNV	Mutect2;Vardict	2	0.075	75	0	0	NA	exonic	Catsper1	nonsynonymous SNV	Catsper1:NM_139301:exon5:c.A1411G:p.I471V	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	5485497	12A2p6	cell line	sgMsh2	5485497	A	-	Deletion	Mutect2;Vardict	2	0.046	91	0	0	NA	exonic	Mus81	frameshift deletion	Mus81:NM_027877:exon7:c.734delT:p.L245Cfs*16	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
22-2_par	chr19	5485502	12A2p6	cell line	sgMsh2	5485502	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	93	0	0	NA	exonic	Mus81	synonymous SNV	Mus81:NM_027877:exon7:c.A729G:p.E243E	19qA	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr19	6985432	12A2p6	cell line	sgMsh2	6985432	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	15	0	0	NA	exonic	Vegfb	nonsynonymous SNV	Vegfb:NM_011697:exon6:c.C575T:p.A192V	19qA	chr19-6054831-7802737	5	4	1	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.8489155	AGC	nonsynonymous	GCAGCG	16	GCAGCGGCAGCGGCAG	NA
22-2_par	chr19	7457786	12A2p6	cell line	sgMsh2	7457786	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	101	0	0	NA	exonic	Rtn3	synonymous SNV	"Rtn3:NM_001003933:exon2:c.A783G:p.K261K,Rtn3:NM_001003934:exon3:c.A840G:p.K280K"	19qA	chr19-6054831-7802737	5	4	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	9.99E-09	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr19	8386496	12A2p6	cell line	sgMsh2	8386496	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	207	0	0	NA	exonic	Slc22a30	synonymous SNV	Slc22a30:NM_177002:exon4:c.T726C:p.S242S	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9994046	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr19	8838616	12A2p6	cell line	sgMsh2	8838616	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	149	0	0	NA	exonic	Gng3	nonsynonymous SNV	Gng3:NM_010316:exon2:c.A37G:p.I13V	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9976743	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	9883824	12A2p6	cell line	sgMsh2	9883824	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	84	0	0	NA	exonic	Incenp	nonsynonymous SNV	"Incenp:NM_001369356:exon10:c.C1393A:p.P465T,Incenp:NM_016692:exon10:c.C1393A:p.P465T"	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.7501726	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	10614937	12A2p6	cell line	sgMsh2	10614937	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	165	0	0	NA	exonic	Ddb1	nonsynonymous SNV	Ddb1:NM_015735:exon9:c.T1091C:p.V364A	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.97577	GTG	nonsynonymous	TG	8	TGTGTGTG	NA
22-2_par	chr19	10676707	12A2p6	cell line	sgMsh2	10676707	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	93	0	0	NA	exonic	Pga5	nonsynonymous SNV	Pga5:NM_021453:exon2:c.A131G:p.Y44C	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.773194139	1	0.9931736	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	13445152	12A2p6	cell line	sgMsh2	13445152	A	C	SNV	Mutect2;MuSe;Vardict	3	0.061	324	0	0	NA	exonic	Olfr1471	nonsynonymous SNV	Olfr1471:NM_207132:exon1:c.A139C:p.I47L	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9997964	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	13655071	12A2p6	cell line	sgMsh2	13655071	T	C	SNV	Mutect2;Vardict	2	0.075	78	0	0	NA	exonic	Olfr1490	nonsynonymous SNV	Olfr1490:NM_001011832:exon1:c.T626C:p.V209A	19qA	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5258496	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	17201694	12A2p6	cell line	sgMsh2	17201694	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	244	0	0	NA	exonic	Prune2	nonsynonymous SNV	Prune2:NM_181348:exon15:c.A8968G:p.R2990G	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.999485	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	17454713	12A2p6	cell line	sgMsh2	17454713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	45	0	0	NA	exonic	Pcsk5	nonsynonymous SNV	Pcsk5:NM_001190483:exon33:c.T4537C:p.Y1513H	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.827137917	1	0.9582256	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	20900811	12A2p6	cell line	sgMsh2	20900811	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	116	0	0	NA	exonic	Tmc1	nonsynonymous SNV	Tmc1:NM_028953:exon5:c.A319G:p.M107V	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5836537	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	21798055	12A2p6	cell line	sgMsh2	21798055	T	C	SNV	Mutect2;Vardict	2	0.045	124	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon4:c.T661C:p.F221L,Cemip2:NM_031997:exon5:c.T661C:p.F221L"	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9983958	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	21835601	12A2p6	cell line	sgMsh2	21835601	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	91	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon18:c.T3169C:p.F1057L,Cemip2:NM_031997:exon19:c.T3169C:p.F1057L"	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	7.64E-07	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	23215194	12A2p6	cell line	sgMsh2	23215194	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	266	0	0	NA	exonic	Smc5	synonymous SNV	Smc5:NM_001252684:exon19:c.A2529G:p.V843V	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9997438	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr19	23616593	12A2p6	cell line	sgMsh2	23616593	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	195	0	0	NA	exonic	1700028P14Rik	nonsynonymous SNV	1700028P14Rik:NM_026188:exon2:c.T184C:p.Y62H	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9975651	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	23705787	12A2p6	cell line	sgMsh2	23705787	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	188	0	0	NA	exonic	Ptar1	nonsynonymous SNV	Ptar1:NM_028208:exon4:c.A404G:p.K135R	19qB	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.9356593	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	26720937	12A2p6	cell line	sgMsh2	26720937	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.153	29	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon27:c.A4004G:p.Q1335R	19qC1	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.687783159	1	0.5179411	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	27322854	12A2p6	cell line	sgMsh2	27322854	G	T	SNV	Mutect2;Vardict	2	0.089	50	0	0	NA	exonic	Kcnv2	nonsynonymous SNV	Kcnv2:NM_183179:exon1:c.G104T:p.R35M	19qC1	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.7583808	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	31932518	12A2p6	cell line	sgMsh2	31932518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	192	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon8:c.A961G:p.T321A,A1cf:NM_001365078:exon8:c.A961G:p.T321A"	19qC1	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.903558268	1	1.45E-09	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	34594078	12A2p6	cell line	sgMsh2	34594078	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	398	0	0	NA	exonic	Ifit1bl1	synonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.T978C:p.H326H,Ifit1bl1:NM_001110517:exon2:c.T978C:p.H326H"	19qC1	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	1.38E-09	AAT	synonymous	NA	NA	NA	NA
22-2_par	chr19	34936971	12A2p6	cell line	sgMsh2	34936971	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	100	0	0	NA	exonic	Kif20b	synonymous SNV	"Kif20b:NM_001362434:exon11:c.A1155C:p.R385R,Kif20b:NM_183046:exon11:c.A1155C:p.R385R"	19qC1	chr19-7864498-38789990	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9911466	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr19	40073702	12A2p6	cell line	sgMsh2	40073702	G	A	SNV	Mutect2;Vardict	2	0.065	159	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon1:c.C110T:p.P37L	19qC3	chr19-38790021-40092661	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9538147	TGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	40183997	12A2p6	cell line	sgMsh2	40183997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	237	0	0	NA	exonic	Cyp2c70	nonsynonymous SNV	Cyp2c70:NM_145499:exon2:c.T200C:p.V67A	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.9946323	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	41887132	12A2p6	cell line	sgMsh2	41887132	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.097	118	0	0	NA	exonic	Rrp12	nonsynonymous SNV	Rrp12:NM_199447:exon7:c.G771T:p.Q257H	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9829599	GCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	46283051	12A2p6	cell line	sgMsh2	46283051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	124	0	0	NA	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon34:c.A4514G:p.H1505R	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9862562	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	46308254	12A2p6	cell line	sgMsh2	46308254	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	225	0	0	NA	exonic	Nfkb2	nonsynonymous SNV	"Nfkb2:NM_001177370:exon9:c.A848C:p.K283T,Nfkb2:NM_019408:exon9:c.A848C:p.K283T,Nfkb2:NM_001177369:exon10:c.A848C:p.K283T"	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.833404	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	46324689	12A2p6	cell line	sgMsh2	46324689	A	T	SNV	Mutect2;Vardict	2	0.159	30	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon3:c.T241A:p.S81T,Psd:NM_028627:exon3:c.T241A:p.S81T"	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.714755048	1	0.609739	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	46558291	12A2p6	cell line	sgMsh2	46558291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	144	0	0	NA	exonic	Arl3	nonsynonymous SNV	"Arl3:NM_001355233:exon2:c.A94G:p.T32A,Arl3:NM_019718:exon2:c.A94G:p.T32A"	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9971658	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	46708980	12A2p6	cell line	sgMsh2	46708980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	115	0	0	NA	exonic	As3mt	synonymous SNV	As3mt:NM_020577:exon4:c.T186C:p.C62C	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.647325326	1	0.5393618	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr19	46856930	12A2p6	cell line	sgMsh2	46856930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	0	0	NA	exonic	Cnnm2	nonsynonymous SNV	"Cnnm2:NM_001102471:exon3:c.A1860G:p.I620M,Cnnm2:NM_033569:exon3:c.A1860G:p.I620M"	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9999986	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr19	47510416	12A2p6	cell line	sgMsh2	47510416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	61	0	0	NA	exonic	Stn1	synonymous SNV	Stn1:NM_175360:exon8:c.A825G:p.R275R	19qC3	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.602372178	2	0.7938215	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr19	57657236	12A2p6	cell line	sgMsh2	57657236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	78	0	0	NA	exonic	Atrnl1	synonymous SNV	Atrnl1:NM_181415:exon9:c.T1527A:p.T509T	19qD2	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.746222251	1	0.9604014	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr19	58970668	12A2p6	cell line	sgMsh2	58970668	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	28	0	0	NA	exonic	Eno4	synonymous SNV	Eno4:NM_178689:exon14:c.A1782T:p.T594T	19qD2	chr19-40096508-61227351	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9776333	CAA	synonymous	NA	NA	NA	NA
22-2_par	chr2	5917836	12A2p6	cell line	sgMsh2	5917836	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	19	0	0	NA	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon8:c.C1511A:p.T504N	2qA1	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.914083	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	5930983	12A2p6	cell line	sgMsh2	5930983	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.118	45	0	0	NA	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon3:c.T317C:p.L106P	2qA1	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.8932767	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	11482530	12A2p6	cell line	sgMsh2	11482530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	143	0	0	NA	exonic	Pfkfb3	nonsynonymous SNV	"Pfkfb3:NM_001177752:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177753:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177754:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177755:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177756:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177757:exon11:c.A1128T:p.E376D,Pfkfb3:NM_001177758:exon11:c.A1068T:p.E356D,Pfkfb3:NM_133232:exon11:c.A1128T:p.E376D"	2qA1	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.9979512	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	14219371	12A2p6	cell line	sgMsh2	14219371	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	151	0	0	NA	exonic	Tmem236	nonsynonymous SNV	Tmem236:NM_001081310:exon4:c.T970C:p.Y324H	2qA2	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.994055	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	20881470	12A2p6	cell line	sgMsh2	20881470	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	154	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon7:c.T895C:p.Y299H,Arhgap21:NM_001128084:exon8:c.T925C:p.Y309H"	2qA3	chr2-3197272-23100032	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.9855154	TAC	nonsynonymous	TACCT	10	TACCTTACCT	NA
22-2_par	chr2	23194518	12A2p6	cell line	sgMsh2	23194518	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	153	0	0	NA	exonic	Yme1l1	nonsynonymous SNV	Yme1l1:NM_013771:exon16:c.T1718C:p.V573A	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9342179	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	24996184	12A2p6	cell line	sgMsh2	24996184	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	140	0	0	NA	exonic	Pnpla7	nonsynonymous SNV	Pnpla7:NM_146251:exon10:c.A904G:p.T302A	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6875542	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	25091773	12A2p6	cell line	sgMsh2	25091773	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	177	0	0	NA	exonic	Noxa1	nonsynonymous SNV	"Noxa1:NM_001163626:exon3:c.C317T:p.A106V,Noxa1:NM_172204:exon3:c.C317T:p.A106V"	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9982107	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	25433389	12A2p6	cell line	sgMsh2	25433389	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	44	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon4:c.T371G:p.L124R,Abca2:NM_007379:exon4:c.T368G:p.L123R"	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.8950117	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	25437258	12A2p6	cell line	sgMsh2	25437258	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.115	69	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon13:c.G1830T:p.Q610H,Abca2:NM_007379:exon13:c.G1827T:p.Q609H"	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9707281	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	26211012	12A2p6	cell line	sgMsh2	26211012	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	76	0	0	NA	exonic	Qsox2	nonsynonymous SNV	Qsox2:NM_001302956:exon12:c.T1979G:p.V660G	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9583907	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	26351383	12A2p6	cell line	sgMsh2	26351383	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	118	0	0	NA	exonic	Dnlz	nonsynonymous SNV	Dnlz:NM_026828:exon2:c.A332G:p.H111R	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9166452	GTG	nonsynonymous	GTG	8	GTGGTGGT	NA
22-2_par	chr2	26370794	12A2p6	cell line	sgMsh2	26370794	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	307	0	0	NA	exonic	Snapc4	nonsynonymous SNV	"Snapc4:NM_172339:exon14:c.A1412G:p.Y471C,Snapc4:NM_001290419:exon15:c.A1142G:p.Y381C"	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.98476	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	26390069	12A2p6	cell line	sgMsh2	26390069	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	208	0	0	NA	exonic	Pmpca	nonsynonymous SNV	Pmpca:NM_173180:exon2:c.G202A:p.V68I	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.9733484	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	26594799	12A2p6	cell line	sgMsh2	26594799	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	194	0	0	NA	exonic	Agpat2	synonymous SNV	Agpat2:NM_026212:exon5:c.G642A:p.K214K	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6264836	TCT	synonymous	NA	NA	NA	NA
22-2_par	chr2	26912429	12A2p6	cell line	sgMsh2	26912429	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	221	0	0	NA	exonic	Rpl7a	nonsynonymous SNV	Rpl7a:NM_013721:exon5:c.A479C:p.D160A	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9803579	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	28984461	12A2p6	cell line	sgMsh2	28984461	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	55	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon3:c.A356G:p.N119S	2qA3	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	2	0.9395028	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	30030805	12A2p6	cell line	sgMsh2	30030805	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	87	0	0	NA	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177668:exon55:c.A7231G:p.K2411E,Sptan1:NM_001369325:exon55:c.A7276G:p.K2426E,Sptan1:NM_001177667:exon56:c.A7291G:p.K2431E,Sptan1:NM_001309460:exon57:c.A7354G:p.K2452E"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6085377	CAA	nonsynonymous	AGG	8	AGGAGGAG	NA
22-2_par	chr2	30079994	12A2p6	cell line	sgMsh2	30079994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	14	0	0	NA	exonic	Pkn3	nonsynonymous SNV	Pkn3:NM_153805:exon3:c.A313G:p.R105G	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.8269193	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	30108277	12A2p6	cell line	sgMsh2	30108277	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	68	0	0	NA	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon6:c.T982C:p.F328L,Zer1:NM_178694:exon6:c.T1021C:p.F341L"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9480987	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	30111318	12A2p6	cell line	sgMsh2	30111318	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.167	27	0	0	NA	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon3:c.T173G:p.V58G,Zer1:NM_178694:exon3:c.T173G:p.V58G"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.6796177	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	31423923	12A2p6	cell line	sgMsh2	31423923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	71	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon69:c.T10518G:p.T3506T	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.7192101	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	31672537	12A2p6	cell line	sgMsh2	31672537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	302	0	0	NA	exonic	Exosc2	nonsynonymous SNV	Exosc2:NM_144886:exon2:c.T188C:p.V63A	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	1	0.8760854	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	32214373	12A2p6	cell line	sgMsh2	32214373	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	97	0	0	NA	exonic	Prrc2b	nonsynonymous SNV	Prrc2b:NM_001159634:exon16:c.G3862A:p.D1288N	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.7852836	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	32303858	12A2p6	cell line	sgMsh2	32303858	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	31	0	0	NA	exonic	Golga2	synonymous SNV	"Golga2:NM_001362698:exon15:c.A1401G:p.A467A,Golga2:NM_001362696:exon16:c.A1497G:p.A499A,Golga2:NM_001362697:exon16:c.A1482G:p.A494A,Golga2:NM_001080968:exon17:c.A1578G:p.A526A,Golga2:NM_001362695:exon17:c.A1578G:p.A526A,Golga2:NM_133852:exon18:c.A1659G:p.A553A"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.7231807	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	32305983	12A2p6	cell line	sgMsh2	32305983	A	G	SNV	Mutect2;Vardict	2	0.064	81	0	0	NA	exonic	Golga2	nonsynonymous SNV	"Golga2:NM_001362698:exon22:c.A2315G:p.Y772C,Golga2:NM_001362696:exon23:c.A2411G:p.Y804C,Golga2:NM_001362697:exon23:c.A2396G:p.Y799C,Golga2:NM_001080968:exon24:c.A2492G:p.Y831C,Golga2:NM_001362695:exon24:c.A2492G:p.Y831C,Golga2:NM_133852:exon25:c.A2573G:p.Y858C"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8307657	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	32402234	12A2p6	cell line	sgMsh2	32402234	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	67	0	0	NA	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon7:c.G1061A:p.R354Q	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	2	0.5069227	CGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	32455025	12A2p6	cell line	sgMsh2	32455025	T	C	SNV	Mutect2;Vardict	2	0.121	40	0	0	NA	exonic	Naif1	nonsynonymous SNV	Naif1:NM_194335:exon2:c.T740C:p.L247P	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.543933087	2	0.8547424	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	33243864	12A2p6	cell line	sgMsh2	33243864	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	114	0	0	NA	exonic	Angptl2	synonymous SNV	Angptl2:NM_011923:exon4:c.T1197C:p.R399R	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7824082	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	34852633	12A2p6	cell line	sgMsh2	34852633	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	191	0	0	NA	exonic	Psmd5	nonsynonymous SNV	"Psmd5:NM_001355544:exon9:c.T936G:p.S312R,Psmd5:NM_080554:exon10:c.T1458G:p.S486R"	2qB	chr2-23118144-36377967	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.9996917	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	36812206	12A2p6	cell line	sgMsh2	36812206	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	47	0	0	NA	exonic	Olfr3	synonymous SNV	Olfr3:NM_206903:exon1:c.A885G:p.K295K	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.8643527	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	36812282	12A2p6	cell line	sgMsh2	36812282	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	136	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.A809G:p.N270S	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.8406237	GTT	nonsynonymous	TGT	11	TGTTGTTGTTG	NA
22-2_par	chr2	36850470	12A2p6	cell line	sgMsh2	36850470	T	C	SNV	Mutect2;Vardict	2	0.044	149	0	0	NA	exonic	Olfr350	synonymous SNV	Olfr350:NM_146627:exon1:c.T423C:p.C141C	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9996689	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	36870437	12A2p6	cell line	sgMsh2	36870437	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	246	0	0	NA	exonic	Olfr352	synonymous SNV	Olfr352:NM_146940:exon1:c.C870A:p.P290P	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	0.9999997	CCT	synonymous	NA	NA	NA	NA
22-2_par	chr2	36907692	12A2p6	cell line	sgMsh2	36907692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	81	0	0	NA	exonic	Olfr354	nonsynonymous SNV	Olfr354:NM_146939:exon1:c.A745G:p.T249A	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.678792529	1	0.7343603	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	37382949	12A2p6	cell line	sgMsh2	37382949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	162	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon13:c.A2114G:p.Y705C,Rc3h2:NM_001290642:exon13:c.A2114G:p.Y705C"	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.9663071	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	37508970	12A2p6	cell line	sgMsh2	37508970	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	109	0	0	NA	exonic	Rabgap1	synonymous SNV	"Rabgap1:NM_001033960:exon13:c.A1671G:p.L557L,Rabgap1:NM_001362956:exon13:c.A1671G:p.L557L,Rabgap1:NM_001362957:exon13:c.A1671G:p.L557L,Rabgap1:NM_001362958:exon13:c.A1467G:p.L489L,Rabgap1:NM_146121:exon13:c.A1671G:p.L557L"	2qB	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6400087	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	49274581	12A2p6	cell line	sgMsh2	49274581	A	G	SNV	Mutect2;Vardict	2	0.12	33	0	0	NA	exonic	Mbd5	nonsynonymous SNV	"Mbd5:NM_001290656:exon6:c.A2879G:p.N960S,Mbd5:NM_029924:exon13:c.A3569G:p.N1190S"	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.8117675	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	52175624	12A2p6	cell line	sgMsh2	52175624	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	198	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon131:c.G18595A:p.A6199T	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9991716	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	52232924	12A2p6	cell line	sgMsh2	52232924	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	156	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon76:c.T11271C:p.S3757S	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9935421	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	52296357	12A2p6	cell line	sgMsh2	52296357	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	141	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon28:c.A2702G:p.K901R	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9734059	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	52296362	12A2p6	cell line	sgMsh2	52296362	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	146	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon28:c.A2697C:p.Q899H	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9766599	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	60241000	12A2p6	cell line	sgMsh2	60241000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	173	0	0	NA	exonic	Marchf7	nonsynonymous SNV	Marchf7:NM_020575:exon7:c.A1847G:p.N616S	2qC1.1	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5327588	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	60627863	12A2p6	cell line	sgMsh2	60627863	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	59	0	0	NA	exonic	Itgb6	synonymous SNV	"Itgb6:NM_021359:exon10:c.T1545C:p.G515G,Itgb6:NM_001159564:exon13:c.T1545C:p.G515G"	2qC1.2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9249615	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	62268813	12A2p6	cell line	sgMsh2	62268813	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	87	0	0	NA	exonic	Slc4a10	frameshift deletion	"Slc4a10:NM_001242379:exon14:c.1814delT:p.F606Lfs*26,Slc4a10:NM_001242381:exon14:c.1811delT:p.F605Lfs*26,Slc4a10:NM_001242383:exon14:c.1811delT:p.F605Lfs*26,Slc4a10:NM_001362673:exon14:c.1811delT:p.F605Lfs*26,Slc4a10:NM_001362674:exon14:c.1811delT:p.F605Lfs*26,Slc4a10:NM_001362676:exon14:c.1811delT:p.F605Lfs*26,Slc4a10:NM_033552:exon14:c.1814delT:p.F606Lfs*26,Slc4a10:NM_001242378:exon15:c.1904delT:p.F636Lfs*26,Slc4a10:NM_001242380:exon15:c.1904delT:p.F636Lfs*26,Slc4a10:NM_001242382:exon15:c.1901delT:p.F635Lfs*26,Slc4a10:NM_001362671:exon15:c.1901delT:p.F635Lfs*26,Slc4a10:NM_001362672:exon15:c.1898delT:p.F634Lfs*26,Slc4a10:NM_001362675:exon15:c.1901delT:p.F635Lfs*26"	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.701269103	NA	NA	ATT	frameshift	T	5	TTTTT	-1
22-2_par	chr2	62478596	12A2p6	cell line	sgMsh2	62478596	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	94	0	0	NA	exonic	Gcg	synonymous SNV	Gcg:NM_008100:exon3:c.C213T:p.A71A	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	2	0.8937204	GGG	synonymous	NA	NA	NA	NA
22-2_par	chr2	62605519	12A2p6	cell line	sgMsh2	62605519	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	89	0	0	NA	exonic	Ifih1	synonymous SNV	"Ifih1:NM_001164477:exon10:c.A2079G:p.A693A,Ifih1:NM_027835:exon11:c.A2226G:p.A742A"	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.6422858	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr2	62837109	12A2p6	cell line	sgMsh2	62837109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	88	0	0	NA	exonic	Kcnh7	nonsynonymous SNV	Kcnh7:NM_133207:exon6:c.A1085G:p.K362R	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.629344067	2	0.6659252	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	65506161	12A2p6	cell line	sgMsh2	65506161	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	122	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon14:c.A2247G:p.V749V,Scn3a:NM_001355167:exon14:c.A2196G:p.V732V,Scn3a:NM_001355168:exon14:c.A2109G:p.V703V,Scn3a:NM_001355169:exon14:c.A2109G:p.V703V,Scn3a:NM_001355170:exon14:c.A2100G:p.V700V,Scn3a:NM_001355171:exon14:c.A342G:p.V114V,Scn3a:NM_018732:exon14:c.A2100G:p.V700V"	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.7216943	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	65670722	12A2p6	cell line	sgMsh2	65670722	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	76	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.A227G:p.E76G,Scn2a:NM_001346679:exon2:c.A227G:p.E76G,Scn2a:NM_001346680:exon2:c.A227G:p.E76G"	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.463017421	2	0.9664234	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	66317844	12A2p6	cell line	sgMsh2	66317844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	118	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon17:c.A3389G:p.E1130G,Scn1a:NM_018733:exon17:c.A3356G:p.E1119G"	2qC1.3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	0.9998382	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	69867286	12A2p6	cell line	sgMsh2	69867286	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	152	0	0	NA	exonic	Ssb	synonymous SNV	"Ssb:NM_001110145:exon5:c.T360C:p.T120T,Ssb:NM_001355265:exon5:c.T360C:p.T120T,Ssb:NM_009278:exon5:c.T360C:p.T120T"	2qC2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.980461	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr2	71082047	12A2p6	cell line	sgMsh2	71082047	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	41	0	0	NA	exonic	Dcaf17	nonsynonymous SNV	"Dcaf17:NM_001165980:exon9:c.T975A:p.N325K,Dcaf17:NM_001165981:exon9:c.T975A:p.N325K,Dcaf17:NM_198005:exon9:c.T975A:p.N325K"	2qC2	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.8361792	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	73287649	12A2p6	cell line	sgMsh2	73287649	T	C	SNV	Mutect2;MuSe;Vardict	3	0.075	360	0	0	NA	exonic	Cir1	nonsynonymous SNV	Cir1:NM_025854:exon8:c.A551G:p.N184S	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.7519596	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	75900231	12A2p6	cell line	sgMsh2	75900231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	339	0	0	NA	exonic	Agps	nonsynonymous SNV	Agps:NM_172666:exon15:c.T1564C:p.Y522H	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9999766	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76731031	12A2p6	cell line	sgMsh2	76731031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	101	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon162:c.A62149G:p.T20717A,Ttn:NM_011652:exon283:c.A81892G:p.T27298A,Ttn:NM_001385708:exon320:c.A87724G:p.T29242A"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.8411768	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76745987	12A2p6	cell line	sgMsh2	76745987	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	72	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.T49580A:p.I16527N,Ttn:NM_011652:exon275:c.T69323A:p.I23108N,Ttn:NM_001385708:exon312:c.T75155A:p.I25052N"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.636326	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76770373	12A2p6	cell line	sgMsh2	76770373	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	187	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon127:c.A31683G:p.P10561P,Ttn:NM_011652:exon248:c.A51426G:p.P17142P,Ttn:NM_001385708:exon285:c.A57258G:p.P19086P"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9941853	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr2	76778565	12A2p6	cell line	sgMsh2	76778565	G	A	SNV	Mutect2;Vardict	2	0.04	150	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon115:c.C28125T:p.G9375G,Ttn:NM_011652:exon236:c.C47868T:p.G15956G,Ttn:NM_001385708:exon273:c.C53700T:p.G17900G"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	0.9998841	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr2	76785154	12A2p6	cell line	sgMsh2	76785154	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	106	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon103:c.A25335G:p.G8445G,Ttn:NM_011652:exon224:c.A45078G:p.G15026G,Ttn:NM_001385708:exon261:c.A50910G:p.G16970G"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.7986506	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr2	76790008	12A2p6	cell line	sgMsh2	76790008	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	108	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon93:c.A22501G:p.T7501A,Ttn:NM_011652:exon214:c.A42244G:p.T14082A,Ttn:NM_001385708:exon251:c.A48076G:p.T16026A"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	9.46E-08	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76796314	12A2p6	cell line	sgMsh2	76796314	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	150	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon79:c.A19604G:p.N6535S,Ttn:NM_011652:exon200:c.A39347G:p.N13116S,Ttn:NM_001385708:exon237:c.A45179G:p.N15060S"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	0.9991532	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76798768	12A2p6	cell line	sgMsh2	76798768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	176	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon74:c.A18244G:p.T6082A,Ttn:NM_011652:exon195:c.A37987G:p.T12663A,Ttn:NM_001385708:exon232:c.A43819G:p.T14607A"	2qC3	chr2-36389686-76824575	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9997476	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76880163	12A2p6	cell line	sgMsh2	76880163	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	156	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon89:c.A22831G:p.T7611A,Ttn:NM_001385708:exon91:c.A25888G:p.T8630A"	2qC3	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9950061	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	76897706	12A2p6	cell line	sgMsh2	76897706	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	108	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon58:c.A14123G:p.H4708R,Ttn:NM_001385708:exon60:c.A17144G:p.H5715R"	2qC3	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9687114	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	77027767	12A2p6	cell line	sgMsh2	77027767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	110	0	0	NA	exonic	Ccdc141	synonymous SNV	Ccdc141:NM_001025576:exon20:c.T3069C:p.F1023F	2qC3	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.984518	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr2	82978139	12A2p6	cell line	sgMsh2	82978139	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	118	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.A4795G:p.N1599D	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	0.9941522	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	83789048	12A2p6	cell line	sgMsh2	83789048	T	A	SNV	Mutect2;Vardict	2	0.06	108	0	0	NA	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon18:c.T1851A:p.S617R	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9476323	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	84859791	12A2p6	cell line	sgMsh2	84859791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	102	0	0	NA	exonic	Slc43a1	synonymous SNV	"Slc43a1:NM_001083809:exon11:c.T1389C:p.G463G,Slc43a1:NM_001081349:exon12:c.T1440C:p.G480G,Slc43a1:NM_024497:exon12:c.T1311C:p.G437G"	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.827137917	1	0.9996119	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	85399959	12A2p6	cell line	sgMsh2	85399959	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	263	0	0	NA	exonic	Olfr992	synonymous SNV	Olfr992:NM_146865:exon1:c.T573C:p.S191S	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9999944	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	85438711	12A2p6	cell line	sgMsh2	85438711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	140	0	0	NA	exonic	Olfr995	nonsynonymous SNV	Olfr995:NM_146434:exon1:c.A446G:p.Y149C	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9992736	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	85868971	12A2p6	cell line	sgMsh2	85868971	T	C	SNV	Mutect2;MuSe;Vardict	3	0.091	314	0	0	NA	exonic	Olfr1022	synonymous SNV	Olfr1022:NM_146589:exon1:c.T378C:p.I126I	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.9993782	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	86385588	12A2p6	cell line	sgMsh2	86385588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	147	0	0	NA	exonic	Olfr1058	nonsynonymous SNV	Olfr1058:NM_146391:exon1:c.T829C:p.F277L	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9996444	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	86639522	12A2p6	cell line	sgMsh2	86639522	A	G	SNV	Mutect2;Vardict	2	0.058	216	0	0	NA	exonic	Olfr1084	nonsynonymous SNV	Olfr1084:NM_207135:exon1:c.T185C:p.F62S	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9987483	AAA	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
22-2_par	chr2	86639532	12A2p6	cell line	sgMsh2	86639532	T	A	SNV	Mutect2;Vardict	2	0.054	204	0	0	NA	exonic	Olfr1084	nonsynonymous SNV	Olfr1084:NM_207135:exon1:c.A175T:p.M59L	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9995259	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	86786671	12A2p6	cell line	sgMsh2	86786671	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	59	0	0	NA	exonic	Olfr1093	nonsynonymous SNV	"Olfr1093:NM_001368206:exon2:c.A940C:p.N314H,Olfr1093:NM_146366:exon3:c.A940C:p.N314H"	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.912548897	1	0.9983909	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	87108062	12A2p6	cell line	sgMsh2	87108062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	143	0	0	NA	exonic	Olfr259	synonymous SNV	Olfr259:NM_146770:exon1:c.A324G:p.V108V	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.9615822	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	87269703	12A2p6	cell line	sgMsh2	87269703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	125	0	0	NA	exonic	Olfr1116	nonsynonymous SNV	Olfr1116:NM_001011734:exon1:c.A858C:p.K286N	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.8723985	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	87388404	12A2p6	cell line	sgMsh2	87388404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	168	0	0	NA	exonic	Olfr1122	nonsynonymous SNV	Olfr1122:NM_147031:exon1:c.T698C:p.I233T	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.530447142	2	0.9995914	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	87711356	12A2p6	cell line	sgMsh2	87711356	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	174	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.A549G:p.P183P	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9991583	GTG	synonymous	GTG	8	GTGGTGGT	NA
22-2_par	chr2	87782919	12A2p6	cell line	sgMsh2	87782919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	136	0	0	NA	exonic	Olfr152	synonymous SNV	Olfr152:NM_146646:exon1:c.T384C:p.V128V	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.8974586	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr2	87833450	12A2p6	cell line	sgMsh2	87833450	A	G	SNV	Mutect2;Vardict	2	0.049	228	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.A410G:p.H137R	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9999715	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	88274798	12A2p6	cell line	sgMsh2	88274798	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	141	0	0	NA	exonic	Olfr1173	nonsynonymous SNV	Olfr1173:NM_207566:exon1:c.A250C:p.I84L	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.9745399	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	88423733	12A2p6	cell line	sgMsh2	88423733	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	233	0	0	NA	exonic	Olfr1181	synonymous SNV	Olfr1181:NM_001011816:exon1:c.A291G:p.L97L	2qD	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.9999998	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	88897299	12A2p6	cell line	sgMsh2	88897299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	178	0	0	NA	exonic	Olfr1208	synonymous SNV	Olfr1208:NM_146778:exon1:c.T297C:p.F99F	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.8738346	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr2	89340011	12A2p6	cell line	sgMsh2	89340011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	116	0	0	NA	exonic	Olfr1233	nonsynonymous SNV	Olfr1233:NM_146972:exon2:c.T290C:p.V97A	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.656315956	1	0.6472014	AAC	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr2	89493642	12A2p6	cell line	sgMsh2	89493642	A	G	SNV	Mutect2;Vardict	2	0.044	172	0	0	NA	exonic	Olfr1242	synonymous SNV	Olfr1242:NM_146968:exon1:c.T669C:p.L223L	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999064	TAA	synonymous	NA	NA	NA	NA
22-2_par	chr2	90002687	12A2p6	cell line	sgMsh2	90002687	A	C	SNV	Mutect2;MuSe;Vardict	3	0.062	337	0	0	NA	exonic	Olfr1262	nonsynonymous SNV	Olfr1262:NM_146974:exon1:c.A280C:p.T94P	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.9997487	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	90252160	12A2p6	cell line	sgMsh2	90252160	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	182	0	0	NA	exonic	Olfr142	nonsynonymous SNV	Olfr142:NM_146984:exon1:c.T827C:p.I276T	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9991846	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	91635179	12A2p6	cell line	sgMsh2	91635179	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	66	0	0	NA	exonic	F2	nonsynonymous SNV	F2:NM_010168:exon3:c.A260G:p.K87R	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.566401	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	92915301	12A2p6	cell line	sgMsh2	92915301	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.266	18	0	0	NA	exonic	Syt13	synonymous SNV	Syt13:NM_030725:exon1:c.T115C:p.L39L	2qE1	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.0981288	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	101696822	12A2p6	cell line	sgMsh2	101696822	A	G	SNV	Mutect2;Vardict	2	0.037	136	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.A916G:p.T306A,Traf6:NM_009424:exon8:c.A916G:p.T306A"	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.9998604	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	101954883	12A2p6	cell line	sgMsh2	101954883	T	C	SNV	Mutect2;Vardict	2	0.093	54	0	0	NA	exonic	Ldlrad3	nonsynonymous SNV	"Ldlrad3:NM_001290784:exon5:c.A743G:p.N248S,Ldlrad3:NM_178886:exon5:c.A746G:p.N249S"	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.8282284	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	101954946	12A2p6	cell line	sgMsh2	101954946	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	69	0	0	NA	exonic	Ldlrad3	nonsynonymous SNV	"Ldlrad3:NM_001290784:exon5:c.A680T:p.H227L,Ldlrad3:NM_178886:exon5:c.A683T:p.H228L"	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.8660918	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	102814294	12A2p6	cell line	sgMsh2	102814294	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	75	0	0	NA	exonic	Cd44	nonsynonymous SNV	"Cd44:NM_001039151:exon9:c.A937G:p.T313A,Cd44:NM_001177787:exon11:c.A1234G:p.T412A,Cd44:NM_001177786:exon12:c.A1336G:p.T446A,Cd44:NM_001039150:exon14:c.A1582G:p.T528A,Cd44:NM_001177785:exon16:c.A1813G:p.T605A,Cd44:NM_009851:exon19:c.A2182G:p.T728A"	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.8208154	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	104233420	12A2p6	cell line	sgMsh2	104233420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	118	0	0	NA	exonic	D430041D05Rik	synonymous SNV	"D430041D05Rik:NM_001033347:exon9:c.T2034C:p.T678T,D430041D05Rik:NM_001368844:exon9:c.T2034C:p.T678T"	2qE2	chr2-76868189-104915002	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9846004	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	109338599	12A2p6	cell line	sgMsh2	109338599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	299	0	0	NA	exonic	Kif18a	nonsynonymous SNV	Kif18a:NM_139303:exon16:c.A2501G:p.E834G	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9982443	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	109894488	12A2p6	cell line	sgMsh2	109894488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	75	0	0	NA	exonic	Lin7c	synonymous SNV	Lin7c:NM_011699:exon2:c.T61C:p.L21L	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.746222251	1	0.9544827	GTT	synonymous	AATTG	10	AATTGAATTG	NA
22-2_par	chr2	110268247	12A2p6	cell line	sgMsh2	110268247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	114	0	0	NA	exonic	Bbox1	synonymous SNV	Bbox1:NM_130452:exon6:c.T984C:p.Y328Y	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.732736307	1	0.9863739	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr2	110632753	12A2p6	cell line	sgMsh2	110632753	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	203	0	0	NA	exonic	Slc5a12	nonsynonymous SNV	"Slc5a12:NM_001003915:exon10:c.T1193C:p.V398A,Slc5a12:NM_001177624:exon10:c.T1193C:p.V398A"	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9804304	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	110644458	12A2p6	cell line	sgMsh2	110644458	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	96	0	0	NA	exonic	Slc5a12	nonsynonymous SNV	"Slc5a12:NM_001003915:exon14:c.G1706A:p.R569Q,Slc5a12:NM_001177624:exon14:c.G1694A:p.R565Q"	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9686917	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	110862915	12A2p6	cell line	sgMsh2	110862915	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	196	0	0	NA	exonic	Ano3	synonymous SNV	"Ano3:NM_001128103:exon4:c.C337T:p.L113L,Ano3:NM_001355245:exon4:c.C337T:p.L113L,Ano3:NM_001355246:exon4:c.C337T:p.L113L"	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9967384	AGG	synonymous	NA	NA	NA	NA
22-2_par	chr2	111379641	12A2p6	cell line	sgMsh2	111379641	C	T	SNV	Mutect2;MuSe;Vardict	3	0.066	289	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.C640T:p.L214F	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9943313	GCT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
22-2_par	chr2	111538234	12A2p6	cell line	sgMsh2	111538234	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	233	0	0	NA	exonic	Olfr1294	synonymous SNV	Olfr1294:NM_146885:exon1:c.C54T:p.A18A	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9998442	GGG	synonymous	NA	NA	NA	NA
22-2_par	chr2	111538253	12A2p6	cell line	sgMsh2	111538253	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	193	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.T35A:p.F12Y	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.999723	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	112129977	12A2p6	cell line	sgMsh2	112129977	A	G	SNV	Mutect2;MuSe;Vardict	3	0.086	159	0	0	NA	exonic	Olfr1316	nonsynonymous SNV	Olfr1316:NM_146742:exon1:c.T839C:p.I280T	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.9246061	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	112652653	12A2p6	cell line	sgMsh2	112652653	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	136	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon89:c.A12778T:p.T4260S	2qE3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.999153	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	114134770	12A2p6	cell line	sgMsh2	114134770	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	65	0	0	NA	exonic	Aqr	synonymous SNV	"Aqr:NM_001290788:exon18:c.A1713G:p.K571K,Aqr:NM_009702:exon18:c.A1713G:p.K571K"	2qE4	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5660471	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	118422188	12A2p6	cell line	sgMsh2	118422188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	77	0	0	NA	exonic	Eif2ak4	nonsynonymous SNV	"Eif2ak4:NM_001355383:exon6:c.T670C:p.Y224H,Eif2ak4:NM_001177806:exon8:c.T904C:p.Y302H,Eif2ak4:NM_013719:exon9:c.T1240C:p.Y414H"	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.570246	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	118430848	12A2p6	cell line	sgMsh2	118430848	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.098	81	0	0	NA	exonic	Eif2ak4	nonsynonymous SNV	"Eif2ak4:NM_001355383:exon9:c.A1298G:p.N433S,Eif2ak4:NM_001177806:exon11:c.A1532G:p.N511S,Eif2ak4:NM_013719:exon12:c.A1868G:p.N623S"	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9506778	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	118823753	12A2p6	cell line	sgMsh2	118823753	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	127	0	0	NA	exonic	Knstrn	synonymous SNV	Knstrn:NM_026412:exon6:c.T643C:p.L215L	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.9709894	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr2	120059119	12A2p6	cell line	sgMsh2	120059119	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	118	0	0	NA	exonic	Sptbn5	nonsynonymous SNV	Sptbn5:NM_001370938:exon41:c.T6935A:p.I2312N	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.7727828	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	120185281	12A2p6	cell line	sgMsh2	120185281	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.115	72	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon8:c.C781A:p.P261T,Pla2g4e:NM_001363090:exon9:c.C514A:p.P172T"	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9749841	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	120323078	12A2p6	cell line	sgMsh2	120323078	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	60	0	0	NA	exonic	Vps39	nonsynonymous SNV	"Vps39:NM_001363053:exon18:c.A1912G:p.S638G,Vps39:NM_001363054:exon18:c.A1609G:p.S537G,Vps39:NM_178851:exon19:c.A1981G:p.S661G,Vps39:NM_147153:exon20:c.A2014G:p.S672G"	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.8682607	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	120535230	12A2p6	cell line	sgMsh2	120535230	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	129	0	0	NA	exonic	Zfp106	nonsynonymous SNV	Zfp106:NM_011743:exon5:c.A764G:p.N255S	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9958385	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	120701138	12A2p6	cell line	sgMsh2	120701138	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	99	0	0	NA	exonic	Stard9	synonymous SNV	Stard9:NM_001370940:exon23:c.A7947G:p.Q2649Q	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	9.51E-08	AAT	synonymous	NA	NA	NA	NA
22-2_par	chr2	120702963	12A2p6	cell line	sgMsh2	120702963	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	66	0	0	NA	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon23:c.C9772A:p.Q3258K	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.6474015	ACA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	120875470	12A2p6	cell line	sgMsh2	120875470	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	67	0	0	NA	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon41:c.A4511G:p.Y1504C	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.921394	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	121195436	12A2p6	cell line	sgMsh2	121195436	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	100	0	0	NA	exonic	Tubgcp4	synonymous SNV	"Tubgcp4:NM_001290824:exon16:c.A1758G:p.L586L,Tubgcp4:NM_153387:exon16:c.A1761G:p.L587L"	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.8945706	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	122085018	12A2p6	cell line	sgMsh2	122085018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	130	0	0	NA	exonic	Spg11	synonymous SNV	Spg11:NM_145531:exon18:c.T3144C:p.A1048A	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9985595	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	122297724	12A2p6	cell line	sgMsh2	122297724	A	G	SNV	Mutect2;Vardict	2	0.111	34	0	0	NA	exonic	Duox2	synonymous SNV	Duox2:NM_001362755:exon2:c.T159C:p.A53A	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.8293149	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	122318526	12A2p6	cell line	sgMsh2	122318526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	166	0	0	NA	exonic	Duox1	nonsynonymous SNV	Duox1:NM_001099297:exon3:c.A281G:p.N94S	2qE5	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.6006386	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	125767467	12A2p6	cell line	sgMsh2	125767467	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	72	0	0	NA	exonic	Secisbp2l	nonsynonymous SNV	Secisbp2l:NM_177608:exon7:c.A940G:p.T314A	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9762737	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	126920402	12A2p6	cell line	sgMsh2	126920402	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	208	0	0	NA	exonic	Sppl2a	nonsynonymous SNV	Sppl2a:NM_023220:exon7:c.T758C:p.I253T	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9997119	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	127350178	12A2p6	cell line	sgMsh2	127350178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	458	0	0	NA	exonic	Astl	nonsynonymous SNV	"Astl:NM_001291003:exon7:c.T652C:p.F218L,Astl:NM_172539:exon7:c.T589C:p.F197L"	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	1.40E-08	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	129459322	12A2p6	cell line	sgMsh2	129459322	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	223	0	0	NA	exonic	F830045P16Rik	nonsynonymous SNV	F830045P16Rik:NM_177653:exon6:c.A1435G:p.I479V	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9936699	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	130284026	12A2p6	cell line	sgMsh2	130284026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	74	0	0	NA	exonic	Idh3b	nonsynonymous SNV	"Idh3b:NM_001362752:exon3:c.T125C:p.V42A,Idh3b:NM_130884:exon3:c.T125C:p.V42A"	2qF1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.917044212	1	0.9997654	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	132793477	12A2p6	cell line	sgMsh2	132793477	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	50	0	0	NA	exonic	Chgb	synonymous SNV	Chgb:NM_007694:exon4:c.T1338C:p.V446V	2qF2	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.8787792	TTC	synonymous	NA	NA	NA	NA
22-2_par	chr2	137090940	12A2p6	cell line	sgMsh2	137090940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	59	0	0	NA	exonic	Jag1	synonymous SNV	Jag1:NM_013822:exon13:c.T1635C:p.S545S	2qF3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.795670713	1	0.9708265	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	143831882	12A2p6	cell line	sgMsh2	143831882	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	99	0	0	NA	exonic	Bfsp1	nonsynonymous SNV	"Bfsp1:NM_001291061:exon6:c.A905G:p.N302S,Bfsp1:NM_009751:exon6:c.A887G:p.N296S"	2qG1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.57783	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	149409995	12A2p6	cell line	sgMsh2	149409995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	176	0	0	NA	exonic	Cst10	nonsynonymous SNV	Cst10:NM_021405:exon3:c.A389G:p.N130S	2qG3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.9741976	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	154345920	12A2p6	cell line	sgMsh2	154345920	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	116	0	0	NA	exonic	Cdk5rap1	synonymous SNV	Cdk5rap1:NM_025876:exon12:c.T1485C:p.A495A	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9928755	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr2	154548948	12A2p6	cell line	sgMsh2	154548948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	55	0	0	NA	exonic	1700003F12Rik	nonsynonymous SNV	1700003F12Rik:NM_029305:exon1:c.A7G:p.N3D	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.881081694	1	0.9946216	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	155986097	12A2p6	cell line	sgMsh2	155986097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	48	0	0	NA	exonic	Cep250	synonymous SNV	"Cep250:NM_001129999:exon24:c.T3627C:p.C1209C,Cep250:NM_001130000:exon24:c.T3630C:p.C1210C,Cep250:NM_008383:exon25:c.T3567C:p.C1189C,Cep250:NM_177217:exon25:c.T3567C:p.C1189C"	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9989949	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr2	156019943	12A2p6	cell line	sgMsh2	156019943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	33	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.G5453A:p.R1818Q	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9896364	CCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	156052589	12A2p6	cell line	sgMsh2	156052589	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	122	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon2:c.A107G:p.H36R	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.9777589	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	156272613	12A2p6	cell line	sgMsh2	156272613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	exonic	Phf20	nonsynonymous SNV	Phf20:NM_172674:exon7:c.A880G:p.S294G	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9999521	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	156525002	12A2p6	cell line	sgMsh2	156525002	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	75	0	0	NA	exonic	Epb41l1	nonsynonymous SNV	"Epb41l1:NM_001006664:exon15:c.A1790G:p.N597S,Epb41l1:NM_001291121:exon15:c.A1754G:p.N585S,Epb41l1:NM_001368802:exon15:c.A1787G:p.N596S,Epb41l1:NM_001368804:exon15:c.A1790G:p.N597S,Epb41l1:NM_013510:exon15:c.A1790G:p.N597S,Epb41l1:NM_001291120:exon16:c.A1790G:p.N597S,Epb41l1:NM_001368801:exon16:c.A1766G:p.N589S,Epb41l1:NM_001368803:exon16:c.A1790G:p.N597S,Epb41l1:NM_001368800:exon18:c.A3821G:p.N1274S"	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.961107	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	156931448	12A2p6	cell line	sgMsh2	156931448	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	150	0	0	NA	exonic	Ndrg3	synonymous SNV	"Ndrg3:NM_001355393:exon13:c.A840G:p.G280G,Ndrg3:NM_001355394:exon13:c.A756G:p.G252G,Ndrg3:NM_001355392:exon14:c.A876G:p.G292G,Ndrg3:NM_013865:exon14:c.A876G:p.G292G,Ndrg3:NM_180956:exon14:c.A876G:p.G292G,Ndrg3:NM_001355391:exon16:c.A876G:p.G292G"	2qH1	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	9.08E-09	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr2	164650539	12A2p6	cell line	sgMsh2	164650539	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	169	0	0	NA	exonic	Wfdc9	nonsynonymous SNV	Wfdc9:NM_001160414:exon3:c.G167T:p.S56I	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.7777683	ACT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	164771872	12A2p6	cell line	sgMsh2	164771872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	53	0	0	NA	exonic	Ube2c	nonsynonymous SNV	Ube2c:NM_026785:exon4:c.T235C:p.Y79H	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9995394	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	165280839	12A2p6	cell line	sgMsh2	165280839	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	83	0	0	NA	exonic	Slc35c2	nonsynonymous SNV	"Slc35c2:NM_001252573:exon6:c.T524G:p.I175S,Slc35c2:NM_001252574:exon6:c.T524G:p.I175S,Slc35c2:NM_001252575:exon6:c.T182G:p.I61S,Slc35c2:NM_001363016:exon6:c.T524G:p.I175S,Slc35c2:NM_144893:exon6:c.T524G:p.I175S,Slc35c2:NM_001363015:exon7:c.T524G:p.I175S"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8368073	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	166059775	12A2p6	cell line	sgMsh2	166059775	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	183	0	0	NA	exonic	Ncoa3	nonsynonymous SNV	"Ncoa3:NM_001374779:exon16:c.G3067A:p.E1023K,Ncoa3:NM_008679:exon16:c.G3067A:p.E1023K"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9999308	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	166585229	12A2p6	cell line	sgMsh2	166585229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	34	0	0	NA	exonic	Prex1	synonymous SNV	Prex1:NM_177782:exon25:c.A3075G:p.V1025V	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.804661343	1	0.8693432	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	166927600	12A2p6	cell line	sgMsh2	166927600	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	93	0	0	NA	exonic	Cse1l	nonsynonymous SNV	Cse1l:NM_023565:exon9:c.A926G:p.K309R	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.7154476	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	166940009	12A2p6	cell line	sgMsh2	166940009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	108	0	0	NA	exonic	Cse1l	nonsynonymous SNV	Cse1l:NM_023565:exon19:c.A2072G:p.Q691R	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9962075	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	167484498	12A2p6	cell line	sgMsh2	167484498	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	63	0	0	NA	exonic	Spata2	nonsynonymous SNV	"Spata2:NM_001356523:exon3:c.T400C:p.Y134H,Spata2:NM_170756:exon3:c.T400C:p.Y134H"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.8476327	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	167689081	12A2p6	cell line	sgMsh2	167689081	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.333	12	0	0	NA	exonic	Cebpb	nonsynonymous SNV	Cebpb:NM_009883:exon1:c.A60C:p.R20S	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.774596	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	168184234	12A2p6	cell line	sgMsh2	168184234	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	98	0	0	NA	exonic	Adnp	synonymous SNV	"Adnp:NM_001310088:exon3:c.A456G:p.L152L,Adnp:NM_009628:exon4:c.A1140G:p.L380L,Adnp:NM_001310086:exon5:c.A1140G:p.L380L"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.09224583	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	168506885	12A2p6	cell line	sgMsh2	168506885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	140	0	0	NA	exonic	Nfatc2	nonsynonymous SNV	"Nfatc2:NM_001291171:exon7:c.A671G:p.H224R,Nfatc2:NM_001291173:exon7:c.A671G:p.H224R,Nfatc2:NM_001291176:exon7:c.A671G:p.H224R,Nfatc2:NM_001291178:exon7:c.A671G:p.H224R,Nfatc2:NM_001136073:exon8:c.A2021G:p.H674R,Nfatc2:NM_001291168:exon8:c.A1961G:p.H654R,Nfatc2:NM_001291169:exon8:c.A1961G:p.H654R,Nfatc2:NM_001291170:exon8:c.A1358G:p.H453R,Nfatc2:NM_001291174:exon8:c.A1358G:p.H453R,Nfatc2:NM_001291175:exon8:c.A1358G:p.H453R,Nfatc2:NM_001291177:exon8:c.A1358G:p.H453R,Nfatc2:NM_010899:exon8:c.A2021G:p.H674R"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.912548897	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	172556194	12A2p6	cell line	sgMsh2	172556194	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	86	0	0	NA	exonic	Tfap2c	nonsynonymous SNV	"Tfap2c:NM_001159696:exon6:c.T1166C:p.M389T,Tfap2c:NM_009335:exon6:c.T1049C:p.M350T"	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.091835	ATG	nonsynonymous	TGT	8	TGTTGTTG	NA
22-2_par	chr2	173157320	12A2p6	cell line	sgMsh2	173157320	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.142	42	0	0	NA	exonic	Pck1	synonymous SNV	Pck1:NM_011044:exon8:c.A1278T:p.V426V	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.638334697	2	0.6141459	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr2	173571114	12A2p6	cell line	sgMsh2	173571114	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	103	0	0	NA	exonic	Ankrd60	nonsynonymous SNV	Ankrd60:NM_027303:exon3:c.G313A:p.A105T	2qH3	chr2-104975268-178394556	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6304427	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	179885933	12A2p6	cell line	sgMsh2	179885933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	74	0	0	NA	exonic	Cdh4	nonsynonymous SNV	Cdh4:NM_009867:exon10:c.A1445G:p.Q482R	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.7222572	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	180278258	12A2p6	cell line	sgMsh2	180278258	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	155	0	0	NA	exonic	Rbbp8nl	nonsynonymous SNV	Rbbp8nl:NM_173031:exon12:c.A1622T:p.K541M	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.552923716	2	0.9969402	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	180661112	12A2p6	cell line	sgMsh2	180661112	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	104	0	0	NA	exonic	Dido1	synonymous SNV	Dido1:NM_175551:exon16:c.A4998G:p.L1666L	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.8721443	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr2	180662176	12A2p6	cell line	sgMsh2	180662176	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	96	0	0	NA	exonic	Dido1	nonsynonymous SNV	Dido1:NM_175551:exon16:c.A3934G:p.I1312V	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6520097	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	181029526	12A2p6	cell line	sgMsh2	181029526	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	90	0	0	NA	exonic	Chrna4	nonsynonymous SNV	Chrna4:NM_015730:exon5:c.T436C:p.F146L	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7402021	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr2	181589166	12A2p6	cell line	sgMsh2	181589166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	56	0	0	NA	exonic	Zfp512b	nonsynonymous SNV	Zfp512b:NM_001164597:exon6:c.G1105A:p.G369S	2qH4	chr2-178401783-181807525	5	3	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9997116	CCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	15417077	12A2p6	cell line	sgMsh2	15417077	T	A	SNV	Mutect2;MuSe;Vardict	3	0.081	249	0	0	NA	exonic	Sirpb1a	nonsynonymous SNV	Sirpb1a:NM_001002898:exon2:c.A190T:p.R64W	3qA1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.8535911	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	30616676	12A2p6	cell line	sgMsh2	30616676	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	exonic	Mynn	nonsynonymous SNV	"Mynn:NM_001289621:exon7:c.C1612T:p.L538F,Mynn:NM_001289623:exon7:c.C1270T:p.L424F,Mynn:NM_001289622:exon8:c.C1354T:p.L452F,Mynn:NM_030557:exon8:c.C1696T:p.L566F"	3qA3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.965956	GCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	30936367	12A2p6	cell line	sgMsh2	30936367	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	74	0	0	NA	exonic	Phc3	nonsynonymous SNV	"Phc3:NM_001165955:exon7:c.T1565C:p.L522S,Phc3:NM_001165954:exon8:c.T1700C:p.L567S,Phc3:NM_153421:exon8:c.T1664C:p.L555S,Phc3:NM_001165956:exon9:c.T1574C:p.L525S"	3qA3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.9470276	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	33808886	12A2p6	cell line	sgMsh2	33808886	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	65	0	0	NA	exonic	Ttc14	nonsynonymous SNV	"Ttc14:NM_001290500:exon11:c.A1442G:p.D481G,Ttc14:NM_027619:exon12:c.A1598G:p.D533G"	3qA3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6179926	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	35963619	12A2p6	cell line	sgMsh2	35963619	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	133	0	0	NA	exonic	Mccc1	frameshift deletion	Mccc1:NM_023644:exon17:c.1931delG:p.G644Afs*5	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	NA	NA	GCC	frameshift	C	5	CCCCC	-1
22-2_par	chr3	36553833	12A2p6	cell line	sgMsh2	36553833	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	33	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon3:c.T189C:p.L63L	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.714755048	1	0.6356147	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr3	36895382	12A2p6	cell line	sgMsh2	36895382	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	54	0	0	NA	exonic	4932438A13Rik	synonymous SNV	4932438A13Rik:NM_172679:exon12:c.T1176C:p.D392D	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.911815	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr3	36943228	12A2p6	cell line	sgMsh2	36943228	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	83	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon27:c.T3433G:p.F1145V	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	1	0.5266883	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	36957122	12A2p6	cell line	sgMsh2	36957122	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	124	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon35:c.T5465C:p.L1822S	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9814239	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	37041768	12A2p6	cell line	sgMsh2	37041768	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	74	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon80:c.A13696G:p.T4566A	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.851708	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	38455031	12A2p6	cell line	sgMsh2	38455031	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	94	0	0	NA	exonic	Ankrd50	nonsynonymous SNV	Ankrd50:NM_001373894:exon4:c.A3297T:p.K1099N	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.7758438	ATT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr3	38891446	12A2p6	cell line	sgMsh2	38891446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	92	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon1:c.T4487C:p.V1496A	3qB	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.714755048	1	0.9333466	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	53525905	12A2p6	cell line	sgMsh2	53525905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	97	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon17:c.A7997G:p.Y2666C	3qC	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.885577009	1	0.999947	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	55247347	12A2p6	cell line	sgMsh2	55247347	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	101	0	0	NA	exonic	Dclk1	nonsynonymous SNV	"Dclk1:NM_001111053:exon2:c.A197G:p.D66G,Dclk1:NM_001195538:exon2:c.A197G:p.D66G,Dclk1:NM_001357466:exon2:c.A197G:p.D66G,Dclk1:NM_001357469:exon2:c.A197G:p.D66G,Dclk1:NM_001357475:exon2:c.A197G:p.D66G,Dclk1:NM_019978:exon2:c.A197G:p.D66G"	3qC	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.7354753	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	58541123	12A2p6	cell line	sgMsh2	58541123	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	71	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon5:c.376delA:p.M128Cfs*109	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	NA	NA	GAA	frameshift	A	5	AAAAA	-1
22-2_par	chr3	59248724	12A2p6	cell line	sgMsh2	59248724	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	116	0	0	NA	exonic	Med12l	nonsynonymous SNV	Med12l:NM_177855:exon25:c.T3662G:p.L1221R	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9818188	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	59329604	12A2p6	cell line	sgMsh2	59329604	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	68	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.A3155C:p.E1052A	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.6970097	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	60024954	12A2p6	cell line	sgMsh2	60024954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	149	0	0	NA	exonic	Aadacl2	nonsynonymous SNV	Aadacl2:NM_001128091:exon5:c.T889C:p.Y297H	3qD	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.7549377	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	64261408	12A2p6	cell line	sgMsh2	64261408	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	174	0	0	NA	exonic	Vmn2r3	synonymous SNV	Vmn2r3:NM_001384949:exon6:c.A1689G:p.Q563Q	3qE1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9991583	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr3	64491124	12A2p6	cell line	sgMsh2	64491124	T	C	SNV	Mutect2;MuSe;Vardict	3	0.086	175	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon5:c.A2172G:p.K724K,Vmn2r5:NM_001385126:exon6:c.A2433G:p.K811K"	3qE1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.9394208	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr3	65946801	12A2p6	cell line	sgMsh2	65946801	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	173	0	0	NA	exonic	Ccnl1	synonymous SNV	"Ccnl1:NM_019937:exon11:c.A1398G:p.S466S,Ccnl1:NM_001355432:exon12:c.A975G:p.S325S,Ccnl1:NM_001355433:exon12:c.A915G:p.S305S"	3qE1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9988314	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr3	65950509	12A2p6	cell line	sgMsh2	65950509	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	202	0	0	NA	exonic	Ccnl1	synonymous SNV	"Ccnl1:NM_019937:exon5:c.A663G:p.E221E,Ccnl1:NM_001355432:exon6:c.A240G:p.E80E,Ccnl1:NM_001355433:exon6:c.A180G:p.E60E"	3qE1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	2	0.9999775	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr3	82034826	12A2p6	cell line	sgMsh2	82034826	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	90	0	0	NA	exonic	Gucy1b1	nonsynonymous SNV	"Gucy1b1:NM_001161796:exon12:c.T1625G:p.L542R,Gucy1b1:NM_017469:exon12:c.T1625G:p.L542R"	3qE3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	2	0.887299	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	82108887	12A2p6	cell line	sgMsh2	82108887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	61	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon5:c.T793C:p.S265P,Gucy1a1:NM_001356988:exon5:c.T793C:p.S265P,Gucy1a1:NM_021896:exon5:c.T793C:p.S265P"	3qE3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.919392	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	82541039	12A2p6	cell line	sgMsh2	82541039	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	49	0	0	NA	exonic	Npy2r	nonsynonymous SNV	"Npy2r:NM_008731:exon2:c.T428G:p.V143G,Npy2r:NM_001205099:exon3:c.T89G:p.V30G"	3qE3	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.8743175	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	84193312	12A2p6	cell line	sgMsh2	84193312	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	44	0	0	NA	exonic	Trim2	frameshift deletion	"Trim2:NM_001271725:exon4:c.511delG:p.E171Sfs*9,Trim2:NM_001271726:exon4:c.433delG:p.E145Sfs*9,Trim2:NM_001271727:exon4:c.433delG:p.E145Sfs*9,Trim2:NM_001271728:exon4:c.433delG:p.E145Sfs*9,Trim2:NM_030706:exon4:c.484delG:p.E162Sfs*9"	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
22-2_par	chr3	84594363	12A2p6	cell line	sgMsh2	84594363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	119	0	0	NA	exonic	Tigd4	nonsynonymous SNV	Tigd4:NM_207278:exon1:c.A586G:p.T196A	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.76420351	1	0.9977273	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	86107267	12A2p6	cell line	sgMsh2	86107267	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	92	0	0	NA	exonic	Sh3d19	nonsynonymous SNV	"Sh3d19:NM_001082414:exon14:c.A2015T:p.Q672L,Sh3d19:NM_001374679:exon15:c.A2015T:p.Q672L"	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5382846	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	87952556	12A2p6	cell line	sgMsh2	87952556	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.095	57	0	0	NA	exonic	Crabp2	nonsynonymous SNV	Crabp2:NM_007759:exon3:c.T328A:p.W110R	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8624974	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	88350756	12A2p6	cell line	sgMsh2	88350756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	70	0	0	NA	exonic	Smg5	nonsynonymous SNV	Smg5:NM_178246:exon11:c.A1177G:p.N393D	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.917044212	1	0.9996195	CAA	nonsynonymous	ATCA	8	ATCAATCA	NA
22-2_par	chr3	88933632	12A2p6	cell line	sgMsh2	88933632	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	97	0	0	NA	exonic	Dap3	nonsynonymous SNV	"Dap3:NM_001164533:exon4:c.A197G:p.Y66C,Dap3:NM_001368419:exon4:c.A182G:p.Y61C,Dap3:NM_022994:exon4:c.A197G:p.Y66C"	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	9.85E-06	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	89137322	12A2p6	cell line	sgMsh2	89137322	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	56	0	0	NA	exonic	Pklr	nonsynonymous SNV	"Pklr:NM_001099779:exon2:c.G106A:p.D36N,Pklr:NM_013631:exon2:c.G199A:p.D67N"	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9997116	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	89357569	12A2p6	cell line	sgMsh2	89357569	T	C	SNV	Mutect2;Vardict	2	0.043	144	0	0	NA	exonic	Dcst1	nonsynonymous SNV	Dcst1:NM_029974:exon7:c.A871G:p.K291E	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9996568	TTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr3	90132415	12A2p6	cell line	sgMsh2	90132415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	157	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon9:c.T1162C:p.Y388H	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.9873614	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	90167843	12A2p6	cell line	sgMsh2	90167843	A	G	SNV	Mutect2;Vardict	2	0.058	85	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon17:c.A2459G:p.N820S	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9257795	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	92869172	12A2p6	cell line	sgMsh2	92869172	A	G	SNV	Mutect2;Vardict	2	0.027	233	0	0	NA	exonic	2310050C09Rik	nonsynonymous SNV	2310050C09Rik:NM_025621:exon2:c.T203C:p.V68A	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.121373499	3	5.62E-09	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	93074412	12A2p6	cell line	sgMsh2	93074412	C	G	SNV	Mutect2;Vardict	2	0.038	163	0	0	NA	exonic	Tdpoz8	nonsynonymous SNV	"Tdpoz8:NM_001177694:exon1:c.C892G:p.L298V,Tdpoz8:NM_001034860:exon3:c.C514G:p.L172V"	3qF1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.170821961	3	0.9999697	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	93201231	12A2p6	cell line	sgMsh2	93201231	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	77	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon3:c.A565T:p.N189Y	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6313605	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	94310217	12A2p6	cell line	sgMsh2	94310217	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	55	0	0	NA	exonic	Them4	nonsynonymous SNV	Them4:NM_029431:exon1:c.A1T:p.M1L	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	1	0.000691213	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	94486847	12A2p6	cell line	sgMsh2	94486847	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.188	23	0	0	NA	exonic	Celf3	synonymous SNV	"Celf3:NM_001379256:exon6:c.T456C:p.P152P,Celf3:NM_001289613:exon7:c.T684C:p.P228P,Celf3:NM_001357784:exon7:c.T684C:p.P228P,Celf3:NM_172434:exon7:c.T681C:p.P227P,Celf3:NM_001289616:exon8:c.T453C:p.P151P,Celf3:NM_001289620:exon8:c.T453C:p.P151P,Celf3:NM_001357785:exon8:c.T456C:p.P152P,Celf3:NM_001357786:exon8:c.T456C:p.P152P,Celf3:NM_001379249:exon8:c.T684C:p.P228P,Celf3:NM_001379250:exon8:c.T681C:p.P227P,Celf3:NM_001379251:exon8:c.T453C:p.P151P,Celf3:NM_001379252:exon8:c.T456C:p.P152P,Celf3:NM_001379253:exon8:c.T456C:p.P152P,Celf3:NM_001379254:exon8:c.T453C:p.P151P,Celf3:NM_001379255:exon8:c.T456C:p.P152P"	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.845119176	1	0.8137111	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr3	94864204	12A2p6	cell line	sgMsh2	94864204	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.122	49	0	0	NA	exonic	Pogz	nonsynonymous SNV	"Pogz:NM_001165948:exon6:c.A685G:p.T229A,Pogz:NM_172683:exon6:c.A685G:p.T229A"	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.8933829	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	95068169	12A2p6	cell line	sgMsh2	95068169	T	C	SNV	Mutect2;Vardict	2	0.054	94	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon8:c.A995G:p.Y332C,Pip5k1a:NM_008847:exon8:c.A992G:p.Y331C"	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9687054	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	95118236	12A2p6	cell line	sgMsh2	95118236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	91	0	0	NA	exonic	Vps72	synonymous SNV	Vps72:NM_009336:exon2:c.T129C:p.D43D	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.47200805	2	0.9864492	ATG	synonymous	GAT	8	GATGATGA	NA
22-2_par	chr3	96171171	12A2p6	cell line	sgMsh2	96171171	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	82	0	0	NA	exonic	Mtmr11	nonsynonymous SNV	Mtmr11:NM_181409:exon17:c.T2042C:p.I681T	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	1	0.601373	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	96188126	12A2p6	cell line	sgMsh2	96188126	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	94	0	0	NA	exonic	Sv2a	synonymous SNV	Sv2a:NM_022030:exon4:c.C834A:p.S278S	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999992	CCT	synonymous	T	5	TTTTT	NA
22-2_par	chr3	96220112	12A2p6	cell line	sgMsh2	96220112	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	99	0	0	NA	exonic	H2ac21	nonsynonymous SNV	H2ac21:NM_178213:exon1:c.T197A:p.L66Q	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	2	0.9893103	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	96220196	12A2p6	cell line	sgMsh2	96220196	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	93	0	0	NA	exonic	H2ac21	nonsynonymous SNV	H2ac21:NM_178213:exon1:c.T281A:p.L94H	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9670691	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	96263039	12A2p6	cell line	sgMsh2	96263039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	65	0	0	NA	exonic	H4c14	nonsynonymous SNV	H4c14:NM_033596:exon1:c.A266G:p.Y89C	3qF2.1	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.9969244	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	98622094	12A2p6	cell line	sgMsh2	98622094	G	A	SNV	Mutect2;Vardict	2	0.034	181	0	0	NA	exonic	Hsd3b5	synonymous SNV	Hsd3b5:NM_008295:exon3:c.C219T:p.C73C	3qF2.2	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	3	0.9999972	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr3	98743831	12A2p6	cell line	sgMsh2	98743831	T	A	SNV	Mutect2;Vardict	2	0.06	223	0	0	NA	exonic	Hsd3b3	nonsynonymous SNV	"Hsd3b3:NM_001161744:exon3:c.A302T:p.N101I,Hsd3b3:NM_001161745:exon3:c.A302T:p.N101I,Hsd3b3:NM_001161742:exon4:c.A302T:p.N101I,Hsd3b3:NM_001161743:exon4:c.A302T:p.N101I"	3qF2.2	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9979026	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	98806313	12A2p6	cell line	sgMsh2	98806313	T	C	SNV	Mutect2;Vardict	2	0.07	158	0	0	NA	exonic	Hsd3b6	synonymous SNV	Hsd3b6:NM_013821:exon4:c.A669G:p.P223P	3qF2.2	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.8453033	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr3	101819515	12A2p6	cell line	sgMsh2	101819515	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	65	0	0	NA	exonic	Mab21l3	nonsynonymous SNV	Mab21l3:NM_172295:exon5:c.A712G:p.T238A	3qF2.2	chr3-10012637-102854538	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.7347115	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	103062498	12A2p6	cell line	sgMsh2	103062498	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	263	0	0	NA	exonic	Nras	nonsynonymous SNV	"Nras:NM_001368638:exon4:c.A415T:p.I139F,Nras:NM_010937:exon4:c.A415T:p.I139F"	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.75521288	1	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	103750351	12A2p6	cell line	sgMsh2	103750351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	70	0	0	NA	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301306:exon11:c.A2281G:p.I761V,Hipk1:NM_001301304:exon12:c.A2416G:p.I806V,Hipk1:NM_010432:exon12:c.A2416G:p.I806V"	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9722208	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	104027882	12A2p6	cell line	sgMsh2	104027882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	116	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon16:c.A2734G:p.I912V,Magi3:NM_133853:exon16:c.A2734G:p.I912V"	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9849364	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	104465667	12A2p6	cell line	sgMsh2	104465667	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	121	0	0	NA	exonic	Lrig2	nonsynonymous SNV	"Lrig2:NM_001025067:exon14:c.T1897C:p.S633P,Lrig2:NM_001310698:exon14:c.T1897C:p.S633P"	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9831678	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	104954818	12A2p6	cell line	sgMsh2	104954818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	48	0	0	NA	exonic	Wnt2b	nonsynonymous SNV	Wnt2b:NM_009520:exon2:c.T203C:p.V68A	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9989949	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	105004784	12A2p6	cell line	sgMsh2	105004784	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	60	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.A1783T:p.T595S,Cttnbp2nl:NM_001163333:exon6:c.A1783T:p.T595S,Cttnbp2nl:NM_030249:exon6:c.A1783T:p.T595S"	3qF2.2	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.7520822	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	107194271	12A2p6	cell line	sgMsh2	107194271	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	100	0	0	NA	exonic	Kcna10	frameshift deletion	Kcna10:NM_001081140:exon2:c.217delC:p.P74Rfs*7	3qF2.3	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.588886234	NA	NA	TCC	frameshift	C	5	CCCCC	-1
22-2_par	chr3	108414543	12A2p6	cell line	sgMsh2	108414543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	40	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon1:c.G952A:p.A318T,Celsr2:NM_017392:exon1:c.G952A:p.A318T"	3qF3	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.894567638	1	0.9794272	GCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	110135418	12A2p6	cell line	sgMsh2	110135418	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	157	0	0	NA	exonic	Ntng1	nonsynonymous SNV	"Ntng1:NM_001163348:exon2:c.G91A:p.D31N,Ntng1:NM_001163349:exon2:c.G91A:p.D31N,Ntng1:NM_001163350:exon2:c.G91A:p.D31N,Ntng1:NM_030699:exon2:c.G91A:p.D31N,Ntng1:NM_133488:exon2:c.G91A:p.D31N"	3qF3	chr3-102934722-110144277	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9971285	TCA	nonsynonymous	TACA	9	TACATACAT	NA
22-2_par	chr3	114185550	12A2p6	cell line	sgMsh2	114185550	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.2	19	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon51:c.G3865T:p.G1289C	3qF3	chr3-110249567-114213591	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.8237766	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	121731621	12A2p6	cell line	sgMsh2	121731621	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	161	0	0	NA	exonic	F3	synonymous SNV	F3:NM_010171:exon4:c.T510C:p.G170G	3qG1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9998996	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr3	121991029	12A2p6	cell line	sgMsh2	121991029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	79	0	0	NA	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon7:c.A604G:p.T202A,Arhgap29:NM_172525:exon7:c.A604G:p.T202A"	3qG1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.9111445	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	122004342	12A2p6	cell line	sgMsh2	122004342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	81	0	0	NA	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon15:c.A1680G:p.I560M,Arhgap29:NM_172525:exon15:c.A1680G:p.I560M"	3qG1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.9147448	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	123671580	12A2p6	cell line	sgMsh2	123671580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	128	0	0	NA	exonic	Ndst3	nonsynonymous SNV	Ndst3:NM_031186:exon1:c.A742G:p.I248V	3qG1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.9224619	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	126965041	12A2p6	cell line	sgMsh2	126965041	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	52	0	0	NA	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_178655:exon7:c.C508T:p.L170F,Ank2:NM_001327939:exon27:c.C2860T:p.L954F,Ank2:NM_001327938:exon28:c.C3007T:p.L1003F"	3qG2	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624848752	2	0.6772683	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	127562892	12A2p6	cell line	sgMsh2	127562892	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	86	0	0	NA	exonic	Zgrf1	nonsynonymous SNV	Zgrf1:NM_197997:exon6:c.A1766T:p.D589V	3qG2	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9579334	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	129829360	12A2p6	cell line	sgMsh2	129829360	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	242	0	0	NA	exonic	Gar1	nonsynonymous SNV	Gar1:NM_026578:exon3:c.A379G:p.I127V	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.999998	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	132734814	12A2p6	cell line	sgMsh2	132734814	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	114	0	0	NA	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon17:c.G1609T:p.V537F	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9815535	GGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	133467873	12A2p6	cell line	sgMsh2	133467873	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	99	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon11:c.T4603C:p.Y1535H,Tet2:NM_001346736:exon12:c.T4627C:p.Y1543H"	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9224224	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	133488064	12A2p6	cell line	sgMsh2	133488064	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	166	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.T608C:p.V203A,Tet2:NM_001346736:exon3:c.T608C:p.V203A"	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9988255	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	138152306	12A2p6	cell line	sgMsh2	138152306	G	A	SNV	Mutect2;Vardict	2	0.041	119	0	0	NA	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon6:c.G613A:p.V205M,Trmt10a:NM_175389:exon6:c.G613A:p.V205M,Trmt10a:NM_001348197:exon7:c.G613A:p.V205M"	3qG3	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.999048	CGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	142245009	12A2p6	cell line	sgMsh2	142245009	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	135	0	0	NA	exonic	Pdlim5	nonsynonymous SNV	"Pdlim5:NM_001190854:exon12:c.T1246C:p.Y416H,Pdlim5:NM_019808:exon12:c.T1573C:p.Y525H,Pdlim5:NM_001190855:exon13:c.T1378C:p.Y460H,Pdlim5:NM_001190856:exon14:c.T1522C:p.Y508H,Pdlim5:NM_001190852:exon15:c.T1642C:p.Y548H"	3qH1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9870617	TAG	nonsynonymous	GTA	8	GTAGTAGT	NA
22-2_par	chr3	142821655	12A2p6	cell line	sgMsh2	142821655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	83	0	0	NA	exonic	Pkn2	synonymous SNV	Pkn2:NM_178654:exon7:c.A1032G:p.V344V	3qH1	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.588886234	2	0.8913833	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr3	144754782	12A2p6	cell line	sgMsh2	144754782	A	G	SNV	Mutect2;Vardict	2	0.056	229	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon6:c.T910C:p.S304P	3qH2	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9996119	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	145032605	12A2p6	cell line	sgMsh2	145032605	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	75	0	0	NA	exonic	Clca1	synonymous SNV	Clca1:NM_017474:exon1:c.A141G:p.E47E	3qH2	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.7237229	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr3	154611510	12A2p6	cell line	sgMsh2	154611510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	27	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon4:c.A365G:p.N122S,Cryz:NM_001357673:exon4:c.A365G:p.N122S,Cryz:NM_001357674:exon4:c.A365G:p.N122S,Cryz:NM_001357675:exon4:c.A365G:p.N122S,Cryz:NM_001357676:exon4:c.A365G:p.N122S,Cryz:NM_009968:exon4:c.A365G:p.N122S"	3qH4	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.831633231	1	0.8438442	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	157988715	12A2p6	cell line	sgMsh2	157988715	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	156	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon6:c.T45G:p.D15E,Ankrd13c:NM_001013806:exon7:c.T852G:p.D284E"	3qH4	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.9862466	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr3	158161687	12A2p6	cell line	sgMsh2	158161687	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.099	60	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon21:c.A2515T:p.S839C,Lrrc7:NM_001370782:exon21:c.A2515T:p.S839C,Lrrc7:NM_001081358:exon22:c.A2416T:p.S806C,Lrrc7:NM_001291452:exon22:c.A2416T:p.S806C,Lrrc7:NM_001291453:exon22:c.A2416T:p.S806C"	3qH4	chr3-114216718-159913826	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.9087992	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	8801390	12A2p6	cell line	sgMsh2	8801390	T	C	SNV	Mutect2;Vardict	2	0.111	30	0	0	NA	exonic	Chd7	synonymous SNV	Chd7:NM_001277149:exon4:c.T2133C:p.G711G	4qA1	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.08085608	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr4	8866372	12A2p6	cell line	sgMsh2	8866372	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.182	25	0	0	NA	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon37:c.A4973G:p.Y1658C,Chd7:NM_001277149:exon38:c.A8678G:p.Y2893C"	4qA1	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	0.7974603	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	15986646	12A2p6	cell line	sgMsh2	15986646	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	121	0	0	NA	exonic	Nbn	nonsynonymous SNV	Nbn:NM_013752:exon13:c.T2046A:p.N682K	4qA2	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.997657	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	19631061	12A2p6	cell line	sgMsh2	19631061	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	120	0	0	NA	exonic	Wwp1	synonymous SNV	"Wwp1:NM_001276292:exon17:c.T1578G:p.G526G,Wwp1:NM_001355222:exon18:c.T1767G:p.G589G,Wwp1:NM_177327:exon18:c.T1971G:p.G657G"	4qA3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.804661343	1	0.9997255	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr4	20054149	12A2p6	cell line	sgMsh2	20054149	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	208	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon5:c.T443C:p.L148S	4qA3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9999274	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	22487127	12A2p6	cell line	sgMsh2	22487127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	75	0	0	NA	exonic	Pou3f2	synonymous SNV	Pou3f2:NM_008899:exon1:c.A1005G:p.E335E	4qA3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.629344067	2	0.6626469	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr4	40226716	12A2p6	cell line	sgMsh2	40226716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	42	0	0	NA	exonic	Ddx58	nonsynonymous SNV	Ddx58:NM_172689:exon5:c.T575C:p.F192S	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9974388	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	42851446	12A2p6	cell line	sgMsh2	42851446	A	G	SNV	Mutect2;MuSe;Vardict	3	0.081	194	0	0	NA	exonic	Fam205a1	nonsynonymous SNV	Fam205a1:NM_001277167:exon4:c.T709C:p.Y237H	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.8041111	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	43007317	12A2p6	cell line	sgMsh2	43007317	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	79	0	0	NA	exonic	Fancg	nonsynonymous SNV	"Fancg:NM_001163233:exon5:c.T612A:p.D204E,Fancg:NM_053081:exon5:c.T612A:p.D204E"	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9756967	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	43235263	12A2p6	cell line	sgMsh2	43235263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	154	0	0	NA	exonic	Unc13b	nonsynonymous SNV	"Unc13b:NM_001310758:exon14:c.T1450C:p.S484P,Unc13b:NM_001081413:exon15:c.T1486C:p.S496P,Unc13b:NM_001384106:exon15:c.T9535C:p.S3179P,Unc13b:NM_021468:exon15:c.T1486C:p.S496P"	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	8.38E-09	GTC	nonsynonymous	GGTCT	11	GGTCTGGTCTG	NA
22-2_par	chr4	43569513	12A2p6	cell line	sgMsh2	43569513	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	81	0	0	NA	exonic	Gba2	nonsynonymous SNV	Gba2:NM_172692:exon9:c.T1531C:p.Y511H	4qA5	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.6572907	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	45399562	12A2p6	cell line	sgMsh2	45399562	A	-	Deletion	Strelka2;Vardict	2	0.1429	56	0	0	NA	exonic	Slc25a51	frameshift deletion	Slc25a51:NM_001009949:exon3:c.576delT:p.F192Lfs*37	4qB1	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.64238048	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
22-2_par	chr4	55013434	12A2p6	cell line	sgMsh2	55013434	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	65	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon3:c.A5399G:p.Y1800C	4qB2	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.09907522	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	57249987	12A2p6	cell line	sgMsh2	57249987	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	55	0	0	NA	exonic	Ptpn3	nonsynonymous SNV	"Ptpn3:NM_001384115:exon8:c.T508C:p.Y170H,Ptpn3:NM_011207:exon8:c.T508C:p.Y170H"	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.09639469	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	57856849	12A2p6	cell line	sgMsh2	57856849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	98	0	0	NA	exonic	Pakap	nonsynonymous SNV	"Pakap:NM_001035533:exon1:c.T2177C:p.V726A,Pakap:NM_001035532:exon2:c.T2177C:p.V726A,Pakap:NM_009649:exon2:c.T2177C:p.V726A,Pakap:NM_001304544:exon7:c.T2765C:p.V922A,Pakap:NM_001384150:exon8:c.T2765C:p.V922A,Pakap:NM_001384157:exon8:c.T2771C:p.V924A"	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.9924338	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	59072319	12A2p6	cell line	sgMsh2	59072319	T	C	SNV	Mutect2;Vardict	2	0.058	95	0	0	NA	exonic	Shoc1	synonymous SNV	Shoc1:NM_001370843:exon14:c.A1896G:p.E632E	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9448533	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr4	59349863	12A2p6	cell line	sgMsh2	59349863	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	78	0	0	NA	exonic	Susd1	synonymous SNV	Susd1:NM_001163288:exon12:c.A1731T:p.A577A	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.7262569	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr4	59857527	12A2p6	cell line	sgMsh2	59857527	T	C	SNV	Mutect2;Vardict	2	0.054	116	0	0	NA	exonic	Snx30	nonsynonymous SNV	Snx30:NM_172468:exon2:c.T239C:p.L80P	4qB3	chr4-3554421-60070040	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9863023	CTT	nonsynonymous	TGA	9	TGATGATGA	NA
22-2_par	chr4	73740339	12A2p6	cell line	sgMsh2	73740339	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	88	0	0	NA	exonic	Rasef	nonsynonymous SNV	Rasef:NM_001017427:exon13:c.T1293G:p.I431M	4qC3	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.7613707	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	81335854	12A2p6	cell line	sgMsh2	81335854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	67	0	0	NA	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305284:exon22:c.A3040G:p.K1014E,Mpdz:NM_001305286:exon22:c.A3040G:p.K1014E,Mpdz:NM_010820:exon22:c.A3040G:p.K1014E"	4qC3	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.809156658	1	0.9883878	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	84292468	12A2p6	cell line	sgMsh2	84292468	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	67	0	0	NA	exonic	Bnc2	stopgain	"Bnc2:NM_001369082:exon5:c.G1684T:p.E562X,Bnc2:NM_172870:exon5:c.G1663T:p.E555X,Bnc2:NM_001369081:exon6:c.G1885T:p.E629X,Bnc2:NM_001369083:exon6:c.G1864T:p.E622X,Bnc2:NM_001369084:exon6:c.G1630T:p.E544X"	4qC4	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.8464654	TCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	84957155	12A2p6	cell line	sgMsh2	84957155	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	48	0	0	NA	exonic	Cntln	synonymous SNV	"Cntln:NM_175275:exon5:c.A825G:p.K275K,Cntln:NM_177385:exon5:c.A825G:p.K275K"	4qC4	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.777633	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr4	86821466	12A2p6	cell line	sgMsh2	86821466	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	81	0	0	NA	exonic	Dennd4c	synonymous SNV	Dennd4c:NM_184088:exon21:c.T2991C:p.S997S	4qC4	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	9.59E-05	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr4	96319312	12A2p6	cell line	sgMsh2	96319312	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	140	0	0	NA	exonic	Cyp2j11	frameshift deletion	Cyp2j11:NM_001004141:exon5:c.765delA:p.K255Nfs*1	4qC5	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	NA	NA	GTT	frameshift	T	5	TTTTT	-1
22-2_par	chr4	102909780	12A2p6	cell line	sgMsh2	102909780	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	116	0	0	NA	exonic	Sgip1	nonsynonymous SNV	"Sgip1:NM_001285862:exon8:c.A455C:p.E152A,Sgip1:NM_001285859:exon11:c.A548C:p.E183A,Sgip1:NM_001285860:exon11:c.A548C:p.E183A,Sgip1:NM_144906:exon11:c.A551C:p.E184A,Sgip1:NM_001285852:exon12:c.A635C:p.E212A"	4qC6	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9908619	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	106430558	12A2p6	cell line	sgMsh2	106430558	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	180	0	0	NA	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon63:c.A7405G:p.K2469E	4qC7	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999397	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	108338459	12A2p6	cell line	sgMsh2	108338459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	37	0	0	NA	exonic	Coa7	nonsynonymous SNV	Coa7:NM_027250:exon3:c.A584G:p.K195R	4qC7	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.9541	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	108718100	12A2p6	cell line	sgMsh2	108718100	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	155	0	0	NA	exonic	Zfyve9	synonymous SNV	"Zfyve9:NM_001347163:exon4:c.C1783T:p.L595L,Zfyve9:NM_001384118:exon4:c.C1783T:p.L595L"	4qC7	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.9995807	AGC	synonymous	GCTTT	10	GCTTTGCTTT	NA
22-2_par	chr4	109883709	12A2p6	cell line	sgMsh2	109883709	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	70	0	0	NA	exonic	Faf1	nonsynonymous SNV	Faf1:NM_007983:exon14:c.T1339C:p.F447L	4qC7	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.489989309	2	0.9717997	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	110955634	12A2p6	cell line	sgMsh2	110955634	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	138	0	0	NA	exonic	Agbl4	nonsynonymous SNV	"Agbl4:NM_001048189:exon4:c.T350C:p.M117T,Agbl4:NM_001284190:exon4:c.T350C:p.M117T,Agbl4:NM_030231:exon4:c.T350C:p.M117T"	4qD1	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9853132	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	111657306	12A2p6	cell line	sgMsh2	111657306	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	103	0	0	NA	exonic	Agbl4	nonsynonymous SNV	Agbl4:NM_030231:exon13:c.A1513G:p.S505G	4qD1	chr4-60155018-112811814	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.7931172	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	116313721	12A2p6	cell line	sgMsh2	116313721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	47	0	0	NA	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon17:c.A2027T:p.K676M,Mast2:NM_008641:exon17:c.A2027T:p.K676M,Mast2:NM_001042743:exon18:c.A2048T:p.K683M,Mast2:NM_001369061:exon18:c.A2048T:p.K683M"	4qD1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.997959878	1	0.9987765	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	119530947	12A2p6	cell line	sgMsh2	119530947	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	87	0	0	NA	exonic	Frg2f1	synonymous SNV	Frg2f1:NM_001004178:exon4:c.A354T:p.P118P	4qD2.1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.8100529	GTG	synonymous	GGT	8	GGTGGTGG	NA
22-2_par	chr4	121147276	12A2p6	cell line	sgMsh2	121147276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	103	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A4836G:p.E1612E	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.656315956	1	0.6159062	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr4	124799769	12A2p6	cell line	sgMsh2	124799769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	102	0	0	NA	exonic	Inpp5b	nonsynonymous SNV	Inpp5b:NM_008385:exon23:c.T2756C:p.I919T	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.009987362	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	124825172	12A2p6	cell line	sgMsh2	124825172	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	103	0	0	NA	exonic	Mtf1	nonsynonymous SNV	Mtf1:NM_008636:exon6:c.A977G:p.N326S	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5792026	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	129472454	12A2p6	cell line	sgMsh2	129472454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	127	0	0	NA	exonic	Bsdc1	nonsynonymous SNV	Bsdc1:NM_133889:exon7:c.T559C:p.W187R	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.8747468	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	129472464	12A2p6	cell line	sgMsh2	129472464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	115	0	0	NA	exonic	Bsdc1	nonsynonymous SNV	Bsdc1:NM_133889:exon7:c.A569G:p.Y190C	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9844128	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	130210462	12A2p6	cell line	sgMsh2	130210462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	57	0	0	NA	exonic	Ldc1	nonsynonymous SNV	Ldc1:NM_001034872:exon9:c.A1156G:p.I386V	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.8021042	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	130210470	12A2p6	cell line	sgMsh2	130210470	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	58	0	0	NA	exonic	Ldc1	nonsynonymous SNV	Ldc1:NM_001034872:exon9:c.A1148G:p.D383G	4qD2.2	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9465216	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	132832938	12A2p6	cell line	sgMsh2	132832938	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	115	0	0	NA	exonic	Ppp1r8	nonsynonymous SNV	"Ppp1r8:NM_001290725:exon4:c.A451C:p.K151Q,Ppp1r8:NM_001355198:exon4:c.A529C:p.K177Q,Ppp1r8:NM_001355199:exon4:c.A529C:p.K177Q,Ppp1r8:NM_146154:exon4:c.A451C:p.K151Q"	4qD2.3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	0.5112091	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	133063514	12A2p6	cell line	sgMsh2	133063514	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	83	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2065G:p.S689G	4qD2.3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.7780079	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	133681073	12A2p6	cell line	sgMsh2	133681073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	171	0	0	NA	exonic	Arid1a	nonsynonymous SNV	"Arid1a:NM_001080819:exon20:c.A6110G:p.Q2037R,Arid1a:NM_001363070:exon20:c.A4967G:p.Q1656R"	4qD2.3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6678763	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	136006195	12A2p6	cell line	sgMsh2	136006195	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	20	0	0	NA	exonic	Eloa	nonsynonymous SNV	Eloa:NM_013736:exon10:c.G2236T:p.D746Y	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9257064	TCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	137615739	12A2p6	cell line	sgMsh2	137615739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	69	0	0	NA	exonic	Usp48	stopgain	"Usp48:NM_001347227:exon10:c.A1198T:p.K400X,Usp48:NM_001355588:exon10:c.A1195T:p.K399X,Usp48:NM_130879:exon10:c.A1195T:p.K399X"	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	2	0.8472408	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	141475975	12A2p6	cell line	sgMsh2	141475975	T	C	SNV	Mutect2;Vardict	2	0.085	57	0	0	NA	exonic	Spen	synonymous SNV	"Spen:NM_001347235:exon11:c.A5271G:p.K1757K,Spen:NM_019763:exon12:c.A5340G:p.K1780K"	4qD3	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.000937442	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr4	144207607	12A2p6	cell line	sgMsh2	144207607	T	C	SNV	Mutect2;Vardict	2	0.061	105	0	0	NA	exonic	Pramel29	nonsynonymous SNV	Pramel29:NM_001177542:exon4:c.A929G:p.K310R	4qE1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9331647	CTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr4	144674698	12A2p6	cell line	sgMsh2	144674698	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	61	0	0	NA	exonic	Aadacl4fm4	nonsynonymous SNV	Aadacl4fm4:NM_001085504:exon2:c.T215G:p.I72S	4qE1	chr4-114231334-147618793	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.7243057	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	148472088	12A2p6	cell line	sgMsh2	148472088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	48	0	0	NA	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon19:c.A2954G:p.K985R	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.674297215	1	0.5662563	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	149372837	12A2p6	cell line	sgMsh2	149372837	T	-	Deletion	Strelka2;Vardict	2	0.1194	67	0	0	NA	exonic	Ube4b	frameshift deletion	Ube4b:NM_022022:exon7:c.942delA:p.A315Hfs*13	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.536740583	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
22-2_par	chr4	149727419	12A2p6	cell line	sgMsh2	149727419	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	28	0	0	NA	exonic	Tmem201	nonsynonymous SNV	"Tmem201:NM_001284270:exon6:c.T968G:p.I323S,Tmem201:NM_001284273:exon6:c.T836G:p.I279S,Tmem201:NM_177672:exon6:c.T968G:p.I323S"	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9776333	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	150192509	12A2p6	cell line	sgMsh2	150192509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	146	0	0	NA	exonic	Car6	nonsynonymous SNV	Car6:NM_009802:exon6:c.T692C:p.V231A	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.9999975	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	150406580	12A2p6	cell line	sgMsh2	150406580	A	-	Deletion	Strelka2;Vardict	2	0.1389	36	0	0	NA	exonic	Rere	frameshift deletion	Rere:NM_001085492:exon2:c.241delA:p.K83Sfs*11	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624399221	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
22-2_par	chr4	152034636	12A2p6	cell line	sgMsh2	152034636	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	49	0	0	NA	exonic	Tas1r1	nonsynonymous SNV	Tas1r1:NM_031867:exon2:c.C475A:p.L159M	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8299671	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	152375097	12A2p6	cell line	sgMsh2	152375097	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	67	0	0	NA	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_001081376:exon22:c.T3289C:p.C1097R,Chd5:NM_001369243:exon22:c.T3289C:p.C1097R,Chd5:NM_029216:exon22:c.T3289C:p.C1097R"	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9350202	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	154267516	12A2p6	cell line	sgMsh2	154267516	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	34	0	0	NA	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon28:c.G3571A:p.E1191K	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9911219	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	155638537	12A2p6	cell line	sgMsh2	155638537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	109	0	0	NA	exonic	Cdk11b	nonsynonymous SNV	"Cdk11b:NM_001355567:exon7:c.A649G:p.T217A,Cdk11b:NM_001355568:exon7:c.A547G:p.T183A,Cdk11b:NM_007661:exon7:c.A649G:p.T217A,Cdk11b:NM_001347308:exon8:c.A547G:p.T183A"	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.8973168	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	155753972	12A2p6	cell line	sgMsh2	155753972	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	129	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C587T:p.A196V	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.9583404	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	155753982	12A2p6	cell line	sgMsh2	155753982	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	127	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C577G:p.R193G	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.9644362	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr4	156219805	12A2p6	cell line	sgMsh2	156219805	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	92	0	0	NA	exonic	Perm1	synonymous SNV	Perm1:NM_172417:exon3:c.T2250C:p.V750V	4qE2	chr4-147755683-156223608	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5378101	TTG	synonymous	TGTT	8	TGTTTGTT	NA
22-2_par	chr5	5626155	12A2p6	cell line	sgMsh2	5626155	T	C	SNV	Mutect2;Vardict	2	0.036	143	0	0	NA	exonic	Cfap69	nonsynonymous SNV	Cfap69:NM_172447:exon7:c.A539G:p.Y180C	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	0.9999309	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	8067549	12A2p6	cell line	sgMsh2	8067549	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	278	0	0	NA	exonic	Sri	nonsynonymous SNV	"Sri:NM_001080974:exon8:c.T587C:p.M196T,Sri:NM_025618:exon8:c.T542C:p.M181T"	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	12571096	12A2p6	cell line	sgMsh2	12571096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	207	0	0	NA	exonic	Sema3d	synonymous SNV	Sema3d:NM_028882:exon15:c.A1668G:p.G556G	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.8168455	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr5	14675901	12A2p6	cell line	sgMsh2	14675901	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	84	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T4772C:p.L1591P,Pclo:NM_011995:exon5:c.T4772C:p.L1591P"	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.8031767	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	14676719	12A2p6	cell line	sgMsh2	14676719	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	172	0	0	NA	exonic	Pclo	stopgain	"Pclo:NM_001110796:exon5:c.A5590T:p.K1864X,Pclo:NM_011995:exon5:c.A5590T:p.K1864X"	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9993119	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	14855644	12A2p6	cell line	sgMsh2	14855644	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.104	74	0	0	NA	exonic	Pclo	nonsynonymous SNV	Pclo:NM_011995:exon23:c.A14887G:p.T4963A	5qA1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	2	0.9667883	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	16322549	12A2p6	cell line	sgMsh2	16322549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	301	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	Cacna2d1:NM_001110843:exon19:c.T1601C:p.V534A	5qA2	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.463017421	2	0.9999979	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	20886415	12A2p6	cell line	sgMsh2	20886415	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	136	0	0	NA	exonic	Tmem60	synonymous SNV	Tmem60:NM_177601:exon2:c.A177C:p.G59G	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9697122	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr5	21301363	12A2p6	cell line	sgMsh2	21301363	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	132	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon15:c.A2079G:p.E693E	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9780492	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr5	21620743	12A2p6	cell line	sgMsh2	21620743	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	212	0	0	NA	exonic	Fbxl13	nonsynonymous SNV	"Fbxl13:NM_001199632:exon5:c.A360G:p.I120M,Fbxl13:NM_177076:exon5:c.A360G:p.I120M"	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.976885	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	21831513	12A2p6	cell line	sgMsh2	21831513	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	207	0	0	NA	exonic	Slc26a5	nonsynonymous SNV	"Slc26a5:NM_001289787:exon7:c.G794A:p.G265D,Slc26a5:NM_001289788:exon7:c.G107A:p.G36D,Slc26a5:NM_030727:exon9:c.G905A:p.G302D"	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.107887554	3	1.53E-08	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	21902923	12A2p6	cell line	sgMsh2	21902923	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	123	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon59:c.C9463T:p.L3155F	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.7229738	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	23486332	12A2p6	cell line	sgMsh2	23486332	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	235	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon14:c.A1654C:p.K552Q	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.9999998	AAA	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr5	23794393	12A2p6	cell line	sgMsh2	23794393	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	121	0	0	NA	exonic	Rint1	nonsynonymous SNV	"Rint1:NM_001310467:exon3:c.T179C:p.I60T,Rint1:NM_177323:exon3:c.T179C:p.I60T"	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9348424	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	25299920	12A2p6	cell line	sgMsh2	25299920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	199	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon43:c.A10389G:p.R3463R	5qA3	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.543933087	2	0.9996715	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr5	25516703	12A2p6	cell line	sgMsh2	25516703	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	55	0	0	NA	exonic	Cct8l1	nonsynonymous SNV	Cct8l1:NM_198621:exon1:c.A415G:p.T139A	5qB1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9378444	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	25831692	12A2p6	cell line	sgMsh2	25831692	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	278	0	0	NA	exonic	Actr3b	nonsynonymous SNV	"Actr3b:NM_001310504:exon7:c.T502C:p.Y168H,Actr3b:NM_001004365:exon8:c.T766C:p.Y256H"	5qB1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	7.93E-09	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	27634522	12A2p6	cell line	sgMsh2	27634522	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	94	0	0	NA	exonic	Dpp6	nonsynonymous SNV	"Dpp6:NM_001136060:exon10:c.A866G:p.N289S,Dpp6:NM_001198886:exon10:c.A860G:p.N287S,Dpp6:NM_010075:exon10:c.A869G:p.N290S,Dpp6:NM_207282:exon10:c.A1034G:p.N345S"	5qB1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	8.82E-07	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	28207340	12A2p6	cell line	sgMsh2	28207340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	173	0	0	NA	exonic	Cnpy1	nonsynonymous SNV	"Cnpy1:NM_001310511:exon2:c.T194C:p.L65P,Cnpy1:NM_001310512:exon3:c.T194C:p.L65P"	5qB1	chr5-3344479-30195284	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.994997	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	30920696	12A2p6	cell line	sgMsh2	30920696	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	148	0	0	NA	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon8:c.T2798C:p.V933A	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6992559	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	30930551	12A2p6	cell line	sgMsh2	30930551	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	122	0	0	NA	exonic	Khk	nonsynonymous SNV	"Khk:NM_001310525:exon5:c.T433C:p.F145L,Khk:NM_001349066:exon6:c.T568C:p.F190L,Khk:NM_008439:exon6:c.T568C:p.F190L,Khk:NM_001310524:exon7:c.T703C:p.F235L"	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6337755	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	31088403	12A2p6	cell line	sgMsh2	31088403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	139	0	0	NA	exonic	Slc30a3	nonsynonymous SNV	"Slc30a3:NM_011773:exon6:c.A785G:p.Y262C,Slc30a3:NM_001347323:exon7:c.A638G:p.Y213C"	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.633839382	2	0.6178981	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	31173975	12A2p6	cell line	sgMsh2	31173975	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	148	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon3:c.C356T:p.S119F	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9980552	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	31263855	12A2p6	cell line	sgMsh2	31263855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	137	0	0	NA	exonic	Ift172	synonymous SNV	Ift172:NM_026298:exon27:c.A2898G:p.R966R	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.9941428	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr5	31622398	12A2p6	cell line	sgMsh2	31622398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	129	0	0	NA	exonic	Mrpl33	nonsynonymous SNV	Mrpl33:NM_025796:exon4:c.T170C:p.V57A	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.454026791	2	0.9948704	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	31673444	12A2p6	cell line	sgMsh2	31673444	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	109	0	0	NA	exonic	Rbks	nonsynonymous SNV	Rbks:NM_153196:exon2:c.C94T:p.L32F	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.9839522	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	32264940	12A2p6	cell line	sgMsh2	32264940	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	296	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon5:c.C236A:p.A79D	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9999773	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	32487696	12A2p6	cell line	sgMsh2	32487696	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	175	0	0	NA	exonic	Ppp1cb	stopgain	Ppp1cb:NM_172707:exon7:c.T870A:p.C290X	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999206	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	33414869	12A2p6	cell line	sgMsh2	33414869	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	229	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon14:c.A2132T:p.Q711L,Uvssa:NM_027674:exon14:c.A2132T:p.Q711L"	5qB1	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9999149	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	34122710	12A2p6	cell line	sgMsh2	34122710	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	163	0	0	NA	exonic	Poln	synonymous SNV	"Poln:NM_001289803:exon5:c.T807C:p.G269G,Poln:NM_181857:exon5:c.T807C:p.G269G,Poln:NM_001289804:exon6:c.T807C:p.G269G"	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9977177	CAC	synonymous	CAC	8	CACCACCA	NA
22-2_par	chr5	34410807	12A2p6	cell line	sgMsh2	34410807	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	34	0	0	NA	exonic	Fam193a	nonsynonymous SNV	Fam193a:NM_001243123:exon2:c.G449T:p.S150I	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.719250362	1	0.6588151	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	34636042	12A2p6	cell line	sgMsh2	34636042	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	87	0	0	NA	exonic	Mfsd10	synonymous SNV	"Mfsd10:NM_001356978:exon4:c.C354G:p.R118R,Mfsd10:NM_001356979:exon4:c.C354G:p.R118R,Mfsd10:NM_026660:exon4:c.C354G:p.R118R"	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8483679	GGC	synonymous	NA	NA	NA	NA
22-2_par	chr5	34659894	12A2p6	cell line	sgMsh2	34659894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	103	0	0	NA	exonic	Nop14	nonsynonymous SNV	Nop14:NM_029278:exon1:c.A152G:p.D51G	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9957643	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	34845998	12A2p6	cell line	sgMsh2	34845998	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	426	0	0	NA	exonic	Htt	synonymous SNV	Htt:NM_010414:exon30:c.A3816G:p.E1272E	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9999968	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr5	34848743	12A2p6	cell line	sgMsh2	34848743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	218	0	0	NA	exonic	Htt	synonymous SNV	Htt:NM_010414:exon32:c.A4122G:p.V1374V	5qB2	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.9237953	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr5	35974479	12A2p6	cell line	sgMsh2	35974479	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	79	0	0	NA	exonic	Afap1	nonsynonymous SNV	Afap1:NM_027373:exon10:c.C1149A:p.D383E	5qB3	chr5-30195285-37739562	7	5	2	0.9	4.045783288	POOR GOF (76.7%)	2	0.854109805	1	0.9989448	ACC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	38224694	12A2p6	cell line	sgMsh2	38224694	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	68	0	0	NA	exonic	Lyar	nonsynonymous SNV	Lyar:NM_025281:exon2:c.A19G:p.N7D	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9691565	CAA	nonsynonymous	ATGCA	10	ATGCAATGCA	NA
22-2_par	chr5	38561151	12A2p6	cell line	sgMsh2	38561151	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	79	0	0	NA	exonic	Wdr1	nonsynonymous SNV	Wdr1:NM_011715:exon2:c.C67A:p.L23I	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.507970568	2	0.9839115	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	38674054	12A2p6	cell line	sgMsh2	38674054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	127	0	0	NA	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.A607G:p.I203V,Zfp518b:NM_001081144:exon4:c.A607G:p.I203V"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	2	0.9969819	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	41820674	12A2p6	cell line	sgMsh2	41820674	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	219	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.A3296G:p.K1099R,Bod1l:NM_001310601:exon10:c.A3296G:p.K1099R"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9999898	TTT	nonsynonymous	T	8	TTTTTTTT	NA
22-2_par	chr5	43284060	12A2p6	cell line	sgMsh2	43284060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	180	0	0	NA	exonic	Cpeb2	nonsynonymous SNV	"Cpeb2:NM_001177379:exon10:c.A2693G:p.Y898C,Cpeb2:NM_001368807:exon10:c.A2702G:p.Y901C,Cpeb2:NM_175937:exon10:c.A2759G:p.Y920C,Cpeb2:NM_001368805:exon11:c.A2792G:p.Y931C,Cpeb2:NM_001368806:exon11:c.A2783G:p.Y928C"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.687783159	1	0.9752075	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	43712391	12A2p6	cell line	sgMsh2	43712391	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	105	0	0	NA	exonic	Cc2d2a	nonsynonymous SNV	"Cc2d2a:NM_001359903:exon22:c.A2780G:p.N927S,Cc2d2a:NM_001359904:exon22:c.A2780G:p.N927S,Cc2d2a:NM_001359905:exon22:c.A2780G:p.N927S,Cc2d2a:NM_001359906:exon22:c.A2780G:p.N927S,Cc2d2a:NM_172274:exon22:c.A2780G:p.N927S"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.341643922	3	6.61E-07	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	43773515	12A2p6	cell line	sgMsh2	43773515	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	333	0	0	NA	exonic	Fbxl5	nonsynonymous SNV	"Fbxl5:NM_001159963:exon2:c.T229C:p.Y77H,Fbxl5:NM_178729:exon2:c.T229C:p.Y77H"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	1.45E-08	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	45507181	12A2p6	cell line	sgMsh2	45507181	G	T	SNV	Mutect2;Vardict	2	0.022	322	0	0	NA	exonic	Lap3	nonsynonymous SNV	Lap3:NM_024434:exon10:c.G1152T:p.K384N	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.098896925	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	48244637	12A2p6	cell line	sgMsh2	48244637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	259	0	0	NA	exonic	Slit2	synonymous SNV	"Slit2:NM_178804:exon22:c.T2331C:p.S777S,Slit2:NM_001291228:exon23:c.T2343C:p.S781S,Slit2:NM_001291227:exon24:c.T2367C:p.S789S"	5qB3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.9849812	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr5	52184719	12A2p6	cell line	sgMsh2	52184719	T	C	SNV	Mutect2;Vardict	2	0.036	207	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon2:c.A256G:p.T86A,Dhx15:NM_007839:exon2:c.A256G:p.T86A"	5qC1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	0.9999991	GTT	nonsynonymous	TGAG	8	TGAGTGAG	NA
22-2_par	chr5	53635970	12A2p6	cell line	sgMsh2	53635970	T	C	SNV	Mutect2;Vardict	2	0.061	150	0	0	NA	exonic	Rbpj	nonsynonymous SNV	"Rbpj:NM_001080927:exon3:c.T68C:p.M23T,Rbpj:NM_001080928:exon3:c.T62C:p.M21T,Rbpj:NM_001359152:exon3:c.T68C:p.M23T,Rbpj:NM_009035:exon3:c.T185C:p.M62T,Rbpj:NM_001277116:exon5:c.T128C:p.M43T"	5qC1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9789803	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	61809301	12A2p6	cell line	sgMsh2	61809301	C	A	SNV	Mutect2;Vardict	2	0.058	222	0	0	NA	exonic	G6pd2	nonsynonymous SNV	G6pd2:NM_019468:exon1:c.C418A:p.L140M	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9989652	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	62669921	12A2p6	cell line	sgMsh2	62669921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	166	0	0	NA	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon17:c.A2953G:p.T985A	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.96905	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	65268949	12A2p6	cell line	sgMsh2	65268949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	139	0	0	NA	exonic	Rfc1	nonsynonymous SNV	"Rfc1:NM_001347357:exon22:c.A2908G:p.R970G,Rfc1:NM_001347358:exon22:c.A2905G:p.R969G,Rfc1:NM_011258:exon22:c.A2908G:p.R970G"	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.9999952	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	65803513	12A2p6	cell line	sgMsh2	65803513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	87	0	0	NA	exonic	N4bp2	nonsynonymous SNV	N4bp2:NM_001024917:exon10:c.C1526A:p.S509Y	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.467512736	2	0.9815801	TCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	67417765	12A2p6	cell line	sgMsh2	67417765	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	71	0	0	NA	exonic	Bend4	nonsynonymous SNV	Bend4:NM_001164806:exon2:c.T772C:p.F258L	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7031555	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	69340363	12A2p6	cell line	sgMsh2	69340363	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	217	0	0	NA	exonic	Kctd8	synonymous SNV	Kctd8:NM_175519:exon1:c.C939A:p.I313I	5qC3.1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9995352	AGA	synonymous	NA	NA	NA	NA
22-2_par	chr5	72523612	12A2p6	cell line	sgMsh2	72523612	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	242	0	0	NA	exonic	Nfxl1	nonsynonymous SNV	Nfxl1:NM_133921:exon18:c.C2164T:p.H722Y	5qC3.2	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	3	0.9999955	TGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	73413080	12A2p6	cell line	sgMsh2	73413080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	203	0	0	NA	exonic	Cwh43	synonymous SNV	Cwh43:NM_181323:exon4:c.T427C:p.L143L	5qC3.2	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	0.9999998	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr5	75176748	12A2p6	cell line	sgMsh2	75176748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	162	0	0	NA	exonic	Pdgfra	synonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1446C:p.S482S,Pdgfra:NM_001347718:exon10:c.T1446C:p.S482S,Pdgfra:NM_001347719:exon10:c.T1446C:p.S482S,Pdgfra:NM_011058:exon10:c.T1446C:p.S482S"	5qC3.3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9986126	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr5	76638108	12A2p6	cell line	sgMsh2	76638108	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.111	101	0	0	NA	exonic	Cep135	frameshift deletion	Cep135:NM_199032:exon23:c.3057delA:p.K1021Nfs*2	5qC3.3	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	NA	NA	TAA	frameshift	A	5	AAAAA	-1
22-2_par	chr5	86414568	12A2p6	cell line	sgMsh2	86414568	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	194	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon8:c.A917C:p.D306A	5qE1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.143850072	3	0.9999994	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	86414587	12A2p6	cell line	sgMsh2	86414587	C	G	SNV	Mutect2;Vardict	2	0.039	162	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon8:c.G898C:p.V300L	5qE1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999577	ACT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	87254458	12A2p6	cell line	sgMsh2	87254458	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	150	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A313G:p.T105A	5qE1	chr5-37820990-87674558	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9899186	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	89861360	12A2p6	cell line	sgMsh2	89861360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	84	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon3:c.A443G:p.Y148C,Adamts3:NM_177872:exon3:c.A443G:p.Y148C"	5qE1	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	1	0.6072378	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	90904432	12A2p6	cell line	sgMsh2	90904432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	149	0	0	NA	exonic	Cxcl2	nonsynonymous SNV	Cxcl2:NM_009140:exon3:c.A279G:p.I93M	5qE1	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.9835156	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	92605167	12A2p6	cell line	sgMsh2	92605167	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	77	0	0	NA	exonic	Stbd1	nonsynonymous SNV	Stbd1:NM_175096:exon2:c.T515A:p.V172E	5qE2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.09158683	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	100801991	12A2p6	cell line	sgMsh2	100801991	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	190	0	0	NA	exonic	Mrps18c	synonymous SNV	Mrps18c:NM_026826:exon3:c.G237A:p.Q79Q	5qE4	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.9337879	AGG	synonymous	NA	NA	NA	NA
22-2_par	chr5	102892790	12A2p6	cell line	sgMsh2	102892790	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	104	0	0	NA	exonic	Arhgap24	nonsynonymous SNV	"Arhgap24:NM_001346585:exon6:c.G1601A:p.S534N,Arhgap24:NM_001286468:exon7:c.G1592A:p.S531N,Arhgap24:NM_146161:exon8:c.G1592A:p.S531N,Arhgap24:NM_029270:exon9:c.G1871A:p.S624N"	5qE5	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9745155	AGC	nonsynonymous	AGC	9	AGCAGCAGC	NA
22-2_par	chr5	104338048	12A2p6	cell line	sgMsh2	104338048	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	92	0	0	NA	exonic	Mepe	nonsynonymous SNV	Mepe:NM_053172:exon3:c.A1053T:p.Q351H	5qE5	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.8210955	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	104478977	12A2p6	cell line	sgMsh2	104478977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	232	0	0	NA	exonic	Pkd2	nonsynonymous SNV	Pkd2:NM_008861:exon4:c.T1024C:p.C342R	5qE5	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.6226871	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	107177820	12A2p6	cell line	sgMsh2	107177820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	109	0	0	NA	exonic	Tgfbr3	synonymous SNV	Tgfbr3:NM_011578:exon4:c.C375T:p.V125V	5qE5	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9952839	GGA	synonymous	NA	NA	NA	NA
22-2_par	chr5	107723264	12A2p6	cell line	sgMsh2	107723264	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	18	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon2:c.T260G:p.F87C,Gfi1:NM_001267621:exon3:c.T458G:p.F153C"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.0981288	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	108135535	12A2p6	cell line	sgMsh2	108135535	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	131	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon2:c.T111G:p.S37R	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9949666	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	108672535	12A2p6	cell line	sgMsh2	108672535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	145	0	0	NA	exonic	Slc26a1	nonsynonymous SNV	"Slc26a1:NM_001310691:exon3:c.T845C:p.I282T,Slc26a1:NM_001310692:exon3:c.T797C:p.I266T,Slc26a1:NM_174870:exon3:c.T797C:p.I266T"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.633839382	2	0.6167441	TAT	nonsynonymous	CACAT	10	CACATCACAT	NA
22-2_par	chr5	109053423	12A2p6	cell line	sgMsh2	109053423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.039	994	0	0	NA	exonic	Vmn2r11	nonsynonymous SNV	"Vmn2r11:NM_001104622:exon3:c.A1214G:p.Y405C,Vmn2r11:NM_001385168:exon3:c.A1175G:p.Y392C"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	1	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	110378158	12A2p6	cell line	sgMsh2	110378158	G	C	SNV	Mutect2;Vardict	2	0.13	30	0	0	NA	exonic	Fbrsl1	synonymous SNV	"Fbrsl1:NM_028596:exon4:c.C177G:p.A59A,Fbrsl1:NM_001142642:exon10:c.C1419G:p.A473A"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.584390919	2	0.7340894	CGG	synonymous	NA	NA	NA	NA
22-2_par	chr5	111277341	12A2p6	cell line	sgMsh2	111277341	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.15	20	0	0	NA	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon16:c.T4938G:p.C1646W	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.674297215	2	0.535843	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	111338384	12A2p6	cell line	sgMsh2	111338384	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	153	0	0	NA	exonic	Pitpnb	synonymous SNV	"Pitpnb:NM_001301643:exon3:c.T153C:p.D51D,Pitpnb:NM_001301666:exon3:c.T153C:p.D51D,Pitpnb:NM_001359215:exon3:c.T153C:p.D51D,Pitpnb:NM_019640:exon3:c.T153C:p.D51D"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.8953096	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr5	114411030	12A2p6	cell line	sgMsh2	114411030	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	116	0	0	NA	exonic	Ube3b	synonymous SNV	"Ube3b:NM_001331219:exon19:c.A1413G:p.E471E,Ube3b:NM_054093:exon20:c.A2094G:p.E698E"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9758711	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr5	115117725	12A2p6	cell line	sgMsh2	115117725	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	211	0	0	NA	exonic	Acads	nonsynonymous SNV	Acads:NM_007383:exon2:c.T50C:p.L17P	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9985333	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	115598721	12A2p6	cell line	sgMsh2	115598721	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	133	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon32:c.T3722G:p.L1241R	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9861803	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	117241156	12A2p6	cell line	sgMsh2	117241156	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	63	0	0	NA	exonic	Taok3	nonsynonymous SNV	"Taok3:NM_001081308:exon13:c.A1255G:p.T419A,Taok3:NM_001199685:exon14:c.A1255G:p.T419A,Taok3:NM_183306:exon14:c.A1255G:p.T419A"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	7.17E-05	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	120555205	12A2p6	cell line	sgMsh2	120555205	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	132	0	0	NA	exonic	Tpcn1	nonsynonymous SNV	Tpcn1:NM_145853:exon7:c.T679C:p.F227L	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9780492	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	120769211	12A2p6	cell line	sgMsh2	120769211	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	193	0	0	NA	exonic	Oas3	nonsynonymous SNV	Oas3:NM_145226:exon6:c.T1360C:p.S454P	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9996186	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	120851583	12A2p6	cell line	sgMsh2	120851583	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	250	0	0	NA	exonic	Oas1f	nonsynonymous SNV	Oas1f:NM_145153:exon3:c.T584A:p.F195Y	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9999464	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	121336615	12A2p6	cell line	sgMsh2	121336615	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	161	0	0	NA	exonic	Hectd4	synonymous SNV	Hectd4:NM_181421:exon54:c.A8298G:p.P2766P	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.768537	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr5	121366580	12A2p6	cell line	sgMsh2	121366580	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	90	0	0	NA	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon76:c.A13232G:p.Y4411C	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5365113	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	121413046	12A2p6	cell line	sgMsh2	121413046	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	383	0	0	NA	exonic	Naa25	nonsynonymous SNV	Naa25:NM_172722:exon5:c.T442C:p.Y148H	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.211279794	3	6.79E-09	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	121495049	12A2p6	cell line	sgMsh2	121495049	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	65	0	0	NA	exonic	Tmem116	nonsynonymous SNV	"Tmem116:NM_001161626:exon10:c.A845G:p.K282R,Tmem116:NM_029912:exon10:c.A485G:p.K162R,Tmem116:NM_001161627:exon11:c.A950G:p.K317R"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5394345	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	122172831	12A2p6	cell line	sgMsh2	122172831	A	G	SNV	Mutect2;Vardict	2	0.063	61	0	0	NA	exonic	Ppp1cc;Ppp1ccb	nonsynonymous SNV	"Ppp1ccb:NM_001370947:exon5:c.A623G:p.D208G,Ppp1cc:NM_013636:exon5:c.A623G:p.D208G"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.7783608	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	122433524	12A2p6	cell line	sgMsh2	122433524	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	218	0	0	NA	exonic	Anapc7	nonsynonymous SNV	Anapc7:NM_019805:exon5:c.A661G:p.I221V	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9999964	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	122461704	12A2p6	cell line	sgMsh2	122461704	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	173	0	0	NA	exonic	Atp2a2	synonymous SNV	"Atp2a2:NM_001110140:exon13:c.A1623G:p.K541K,Atp2a2:NM_009722:exon13:c.A1623G:p.K541K"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9999501	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr5	123796621	12A2p6	cell line	sgMsh2	123796621	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	287	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon43:c.A4354T:p.S1452C	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9999982	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	124263032	12A2p6	cell line	sgMsh2	124263032	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	109	0	0	NA	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon17:c.T2561C:p.L854S,Mphosph9:NM_001277867:exon18:c.T2651C:p.L884S"	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6400087	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	124641472	12A2p6	cell line	sgMsh2	124641472	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	106	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon6:c.T524C:p.F175S	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	0.9929467	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	124641484	12A2p6	cell line	sgMsh2	124641484	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	116	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon6:c.T536C:p.L179P	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6294976	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	124646745	12A2p6	cell line	sgMsh2	124646745	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	64	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon9:c.T967A:p.C323S	5qF	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9388333	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	130213129	12A2p6	cell line	sgMsh2	130213129	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	213	0	0	NA	exonic	Rabgef1	nonsynonymous SNV	"Rabgef1:NM_001359233:exon8:c.T797G:p.L266R,Rabgef1:NM_019983:exon8:c.T1373G:p.L458R,Rabgef1:NM_001199059:exon9:c.T1373G:p.L458R,Rabgef1:NM_001378873:exon9:c.T1376G:p.L459R"	5qG1.3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9997641	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	135734861	12A2p6	cell line	sgMsh2	135734861	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	150	0	0	NA	exonic	Por	synonymous SNV	Por:NM_008898:exon16:c.C1941T:p.I647I	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.8643652	TCG	synonymous	NA	NA	NA	NA
22-2_par	chr5	136012098	12A2p6	cell line	sgMsh2	136012098	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	111	0	0	NA	exonic	Dtx2	nonsynonymous SNV	"Dtx2:NM_001256096:exon4:c.G356A:p.G119E,Dtx2:NM_001256098:exon4:c.G356A:p.G119E,Dtx2:NM_023742:exon4:c.G356A:p.G119E,Dtx2:NM_001256097:exon5:c.G356A:p.G119E"	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9594936	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	136198873	12A2p6	cell line	sgMsh2	136198873	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.375	8	0	0	NA	exonic	Prkrip1	synonymous SNV	Prkrip1:NM_025774:exon1:c.A28C:p.R10R	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.6318268	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr5	137416255	12A2p6	cell line	sgMsh2	137416255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	218	0	0	NA	exonic	Zan	synonymous SNV	Zan:NM_011741:exon48:c.T9468C:p.C3156C	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6462832	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr5	137667728	12A2p6	cell line	sgMsh2	137667728	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	306	0	0	NA	exonic	Agfg2	nonsynonymous SNV	"Agfg2:NM_001303266:exon2:c.A268G:p.T90A,Agfg2:NM_001303271:exon2:c.A268G:p.T90A,Agfg2:NM_178162:exon2:c.A268G:p.T90A"	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.9585553	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	137785617	12A2p6	cell line	sgMsh2	137785617	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	27	0	0	NA	exonic	Mepce	nonsynonymous SNV	Mepce:NM_144913:exon1:c.A446T:p.N149I	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9739448	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	138806273	12A2p6	cell line	sgMsh2	138806273	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	106	0	0	NA	exonic	Fam20c	nonsynonymous SNV	"Fam20c:NM_030565:exon6:c.G1124T:p.R375M,Fam20c:NM_001359593:exon7:c.G353T:p.R118M"	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9718487	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	139716605	12A2p6	cell line	sgMsh2	139716605	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	186	0	0	NA	exonic	Micall2	nonsynonymous SNV	Micall2:NM_174850:exon6:c.A882T:p.E294D	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9994894	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	140612800	12A2p6	cell line	sgMsh2	140612800	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	184	0	0	NA	exonic	Lfng	nonsynonymous SNV	Lfng:NM_008494:exon5:c.T773G:p.F258C	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9994451	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	140631570	12A2p6	cell line	sgMsh2	140631570	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	76	0	0	NA	exonic	Ttyh3	nonsynonymous SNV	"Ttyh3:NM_001308040:exon9:c.C943T:p.H315Y,Ttyh3:NM_175274:exon9:c.C943T:p.H315Y"	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	7.80E-05	TGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	142476922	12A2p6	cell line	sgMsh2	142476922	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	80	0	0	NA	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon16:c.C1964T:p.S655L	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	1	0.520363	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	142567913	12A2p6	cell line	sgMsh2	142567913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	213	0	0	NA	exonic	Mmd2	synonymous SNV	Mmd2:NM_175217:exon6:c.T492G:p.L164L	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.9372163	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr5	142904085	12A2p6	cell line	sgMsh2	142904085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	128	0	0	NA	exonic	Actb	synonymous SNV	Actb:NM_007393:exon5:c.T966C:p.P322P	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.56640966	2	0.9844736	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr5	143928265	12A2p6	cell line	sgMsh2	143928265	A	G	SNV	Mutect2;Vardict	2	0.061	81	0	0	NA	exonic	Pms2	nonsynonymous SNV	Pms2:NM_008886:exon12:c.A2164G:p.T722A	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.880149	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	145029781	12A2p6	cell line	sgMsh2	145029781	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	196	0	0	NA	exonic	Gm4871	synonymous SNV	Gm4871:NM_001101463:exon5:c.T891C:p.T297T	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	3	0.9999521	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr5	145986842	12A2p6	cell line	sgMsh2	145986842	T	-	Deletion	Strelka2;Vardict	2	0.1162	241	0	0	NA	exonic	Cyp3a25	frameshift deletion	Cyp3a25:NM_019792:exon10:c.990delA:p.K330Nfs*20	5qG2	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.522355576	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
22-2_par	chr5	146292757	12A2p6	cell line	sgMsh2	146292757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	407	0	0	NA	exonic	Cdk8	synonymous SNV	"Cdk8:NM_001359990:exon7:c.A780G:p.G260G,Cdk8:NM_001359991:exon7:c.A585G:p.G195G,Cdk8:NM_153599:exon7:c.A780G:p.G260G"	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.9987377	GAT	synonymous	NA	NA	NA	NA
22-2_par	chr5	147344517	12A2p6	cell line	sgMsh2	147344517	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	132	0	0	NA	exonic	Flt3	nonsynonymous SNV	Flt3:NM_010229:exon19:c.A2404G:p.M802V	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9664038	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	147350649	12A2p6	cell line	sgMsh2	147350649	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	311	0	0	NA	exonic	Flt3	synonymous SNV	Flt3:NM_010229:exon16:c.A2043G:p.A681A	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9998972	ATG	synonymous	C	5	CCCCC	NA
22-2_par	chr5	147536440	12A2p6	cell line	sgMsh2	147536440	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	213	0	0	NA	exonic	Pan3	synonymous SNV	"Pan3:NM_028291:exon14:c.T1927C:p.L643L,Pan3:NM_001359433:exon15:c.T1153C:p.L385L"	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9998836	TTT	synonymous	TTGGCT	13	TTGGCTTTGGCTT	NA
22-2_par	chr5	148337110	12A2p6	cell line	sgMsh2	148337110	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	148	0	0	NA	exonic	Slc7a1	nonsynonymous SNV	"Slc7a1:NM_001301424:exon9:c.T1268C:p.L423S,Slc7a1:NM_007513:exon9:c.T1268C:p.L423S"	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.9101635	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr5	151063142	12A2p6	cell line	sgMsh2	151063142	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	113	0	0	NA	exonic	Stard13	nonsynonymous SNV	"Stard13:NM_001359985:exon4:c.T374A:p.M125K,Stard13:NM_001163493:exon5:c.T902A:p.M301K,Stard13:NM_146258:exon5:c.T902A:p.M301K"	5qG3	chr5-88384592-151647482	6	4	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8489927	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	5134145	12A2p6	cell line	sgMsh2	5134145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	39	0	0	NA	exonic	Ppp1r9a	nonsynonymous SNV	"Ppp1r9a:NM_001363809:exon12:c.A2731G:p.T911A,Ppp1r9a:NM_181595:exon12:c.A2731G:p.T911A"	6qA1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9786664	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	17571467	12A2p6	cell line	sgMsh2	17571467	A	T	SNV	Mutect2;Vardict	2	0.064	81	0	0	NA	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon21:c.A3888T:p.Q1296H	6qA2	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8307657	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	29206361	12A2p6	cell line	sgMsh2	29206361	G	T	SNV	Mutect2;Vardict	2	0.077	67	0	0	NA	exonic	Impdh1	nonsynonymous SNV	"Impdh1:NM_011829:exon5:c.C476A:p.T159N,Impdh1:NM_001302933:exon6:c.C650A:p.T217N,Impdh1:NM_001302934:exon6:c.C647A:p.T216N"	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	8.83E-05	GGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	29560166	12A2p6	cell line	sgMsh2	29560166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	128	0	0	NA	exonic	Tnpo3	synonymous SNV	"Tnpo3:NM_001347079:exon16:c.A1977G:p.V659V,Tnpo3:NM_177296:exon16:c.A1977G:p.V659V,Tnpo3:NM_001361290:exon17:c.A1779G:p.V593V"	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.56640966	2	0.9844736	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr6	30102252	12A2p6	cell line	sgMsh2	30102252	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	57	0	0	NA	exonic	Nrf1	synonymous SNV	"Nrf1:NM_001164226:exon6:c.A549G:p.S183S,Nrf1:NM_001164227:exon6:c.A549G:p.S183S,Nrf1:NM_001164228:exon6:c.A549G:p.S183S,Nrf1:NM_001164230:exon6:c.A549G:p.S183S,Nrf1:NM_001361692:exon6:c.A549G:p.S183S,Nrf1:NM_001361694:exon6:c.A549G:p.S183S,Nrf1:NM_001361695:exon6:c.A549G:p.S183S,Nrf1:NM_010938:exon6:c.A549G:p.S183S,Nrf1:NM_001164229:exon7:c.A585G:p.S195S,Nrf1:NM_001361693:exon7:c.A585G:p.S195S"	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.8396231	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr6	30812791	12A2p6	cell line	sgMsh2	30812791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	221	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon16:c.T1601C:p.V534A	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.845119176	1	4.77E-09	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	30894876	12A2p6	cell line	sgMsh2	30894876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	279	0	0	NA	exonic	Copg2	synonymous SNV	Copg2:NM_017478:exon3:c.T142C:p.L48L	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.606867493	2	0.9723248	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr6	34167638	12A2p6	cell line	sgMsh2	34167638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	244	0	0	NA	exonic	Slc35b4	nonsynonymous SNV	Slc35b4:NM_021435:exon3:c.T281C:p.M94T	6qA3.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.750239	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	35051476	12A2p6	cell line	sgMsh2	35051476	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	104	0	0	NA	exonic	Cnot4	nonsynonymous SNV	"Cnot4:NM_001164411:exon10:c.T1204G:p.F402V,Cnot4:NM_001164412:exon10:c.T1204G:p.F402V,Cnot4:NM_001164413:exon10:c.T1204G:p.F402V,Cnot4:NM_001164414:exon10:c.T1213G:p.F405V,Cnot4:NM_016877:exon10:c.T1213G:p.F405V"	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9837386	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	35243837	12A2p6	cell line	sgMsh2	35243837	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	146	0	0	NA	exonic	Nup205	nonsynonymous SNV	Nup205:NM_027513:exon39:c.T5414G:p.V1805G	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.211279794	3	0.9991934	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	38148437	12A2p6	cell line	sgMsh2	38148437	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	62	0	0	NA	exonic	D630045J12Rik	synonymous SNV	D630045J12Rik:NM_194061:exon14:c.C4641T:p.T1547T	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.914304	TGG	synonymous	NA	NA	NA	NA
22-2_par	chr6	38195648	12A2p6	cell line	sgMsh2	38195648	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	178	0	0	NA	exonic	D630045J12Rik	synonymous SNV	D630045J12Rik:NM_194061:exon2:c.T1584C:p.S528S	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9992875	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr6	38482526	12A2p6	cell line	sgMsh2	38482526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	162	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon10:c.A1697G:p.E566G	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5992881	GAA	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr6	38982126	12A2p6	cell line	sgMsh2	38982126	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	340	0	0	NA	exonic	Tbxas1	nonsynonymous SNV	Tbxas1:NM_011539:exon4:c.A242G:p.Y81C	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	39355107	12A2p6	cell line	sgMsh2	39355107	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	87	0	0	NA	exonic	Slc37a3	nonsynonymous SNV	"Slc37a3:NM_001361619:exon5:c.A307G:p.T103A,Slc37a3:NM_028123:exon6:c.A391G:p.T131A,Slc37a3:NM_001361618:exon7:c.A391G:p.T131A,Slc37a3:NM_001361617:exon8:c.A391G:p.T131A"	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.8818707	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	40517755	12A2p6	cell line	sgMsh2	40517755	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	116	0	0	NA	exonic	Prss37	nonsynonymous SNV	Prss37:NM_026317:exon3:c.A95G:p.Y32C	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	8.84E-08	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	40579445	12A2p6	cell line	sgMsh2	40579445	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	121	0	0	NA	exonic	Clec5a	nonsynonymous SNV	"Clec5a:NM_021364:exon5:c.A311T:p.Y104F,Clec5a:NM_001038604:exon6:c.A386T:p.Y129F"	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.742517	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	41313371	12A2p6	cell line	sgMsh2	41313371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	356	0	0	NA	exonic	Try5	nonsynonymous SNV	Try5:NM_001003405:exon2:c.T178C:p.S60P	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9990849	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	41355494	12A2p6	cell line	sgMsh2	41355494	A	G	SNV	Mutect2;Vardict	2	0.055	241	0	0	NA	exonic	Try10	nonsynonymous SNV	Try10:NM_001038996:exon2:c.A83G:p.Y28C	6qB1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9998291	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	42364997	12A2p6	cell line	sgMsh2	42364997	T	C	SNV	Mutect2;Vardict	2	0.174	28	0	0	NA	exonic	Epha1	nonsynonymous SNV	Epha1:NM_023580:exon6:c.A1118G:p.Q373R	6qB2.1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.782184769	1	0.7652756	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	43283927	12A2p6	cell line	sgMsh2	43283927	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	53	0	0	NA	exonic	Arhgef5	nonsynonymous SNV	Arhgef5:NM_133674:exon12:c.T4285C:p.F1429L	6qB2.1	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9228077	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	47107893	12A2p6	cell line	sgMsh2	47107893	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	48	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon20:c.G3287T:p.R1096I	6qB2.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.687783159	1	0.000738065	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	48501078	12A2p6	cell line	sgMsh2	48501078	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	85	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon103:c.T15414C:p.G5138G	6qB2.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.7331143	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr6	48835535	12A2p6	cell line	sgMsh2	48835535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	144	0	0	NA	exonic	Tmem176b	synonymous SNV	"Tmem176b:NM_001164207:exon5:c.A495G:p.S165S,Tmem176b:NM_001164208:exon5:c.A495G:p.S165S,Tmem176b:NM_001286652:exon5:c.A495G:p.S165S,Tmem176b:NM_023056:exon5:c.A495G:p.S165S,Tmem176b:NM_001164209:exon6:c.A495G:p.S165S,Tmem176b:NM_001286651:exon6:c.A495G:p.S165S"	6qB2.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.579895605	2	0.9775092	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr6	48976359	12A2p6	cell line	sgMsh2	48976359	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	96	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.G1217A:p.G406E	6qB2.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.8869193	GGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	48987996	12A2p6	cell line	sgMsh2	48987996	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	116	0	0	NA	exonic	Svs1	nonsynonymous SNV	Svs1:NM_172888:exon1:c.A937G:p.I313V	6qB2.3	chr6-3373003-51458746	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9999965	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	52765930	12A2p6	cell line	sgMsh2	52765930	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	119	0	0	NA	exonic	Tax1bp1	synonymous SNV	"Tax1bp1:NM_001355595:exon17:c.T2115C:p.D705D,Tax1bp1:NM_001355596:exon18:c.T2301C:p.D767D,Tax1bp1:NM_025816:exon18:c.T2301C:p.D767D"	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.7385992	ATC	synonymous	NA	NA	NA	NA
22-2_par	chr6	53388808	12A2p6	cell line	sgMsh2	53388808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	91	0	0	NA	exonic	Creb5	nonsynonymous SNV	Creb5:NM_001327821:exon4:c.T172C:p.F58L	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.759708195	1	0.9871262	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	55100726	12A2p6	cell line	sgMsh2	55100726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	83	0	0	NA	exonic	Crhr2	nonsynonymous SNV	"Crhr2:NM_001288620:exon5:c.A278G:p.N93S,Crhr2:NM_001288619:exon6:c.A593G:p.N198S,Crhr2:NM_001288618:exon7:c.A653G:p.N218S,Crhr2:NM_009953:exon7:c.A650G:p.N217S"	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.6690745	GTT	nonsynonymous	AGA	8	AGAAGAAG	NA
22-2_par	chr6	55117472	12A2p6	cell line	sgMsh2	55117472	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	50	0	0	NA	exonic	Crhr2	synonymous SNV	"Crhr2:NM_001288619:exon2:c.A171G:p.G57G,Crhr2:NM_001288618:exon3:c.A231G:p.G77G,Crhr2:NM_009953:exon3:c.A231G:p.G77G"	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9175431	CTC	synonymous	NA	NA	NA	NA
22-2_par	chr6	57234158	12A2p6	cell line	sgMsh2	57234158	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	316	0	0	NA	exonic	Vmn1r14	synonymous SNV	Vmn1r14:NM_053237:exon1:c.G720T:p.L240L	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.170821961	3	2.48E-09	TGG	synonymous	NA	NA	NA	NA
22-2_par	chr6	57900796	12A2p6	cell line	sgMsh2	57900796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	277	0	0	NA	exonic	Vmn1r22	synonymous SNV	Vmn1r22:NM_134178:exon1:c.T195C:p.F65F	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.9999129	CAA	synonymous	NA	NA	NA	NA
22-2_par	chr6	58435233	12A2p6	cell line	sgMsh2	58435233	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	324	0	0	NA	exonic	Vmn1r30	nonsynonymous SNV	Vmn1r30:NM_134177:exon1:c.C613A:p.H205N	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.9999013	TGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	58956709	12A2p6	cell line	sgMsh2	58956709	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	69	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon9:c.T895C:p.Y299H	6qB3	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.602372178	2	0.8105151	TAC	nonsynonymous	CTGC	14	CTGCCTGCTCTGCC	NA
22-2_par	chr6	66612370	12A2p6	cell line	sgMsh2	66612370	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	426	0	0	NA	exonic	Vmn1r33	synonymous SNV	Vmn1r33:NM_134169:exon1:c.T199C:p.L67L	6qC1	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.143850072	3	1.00E-09	AAA	synonymous	NA	NA	NA	NA
22-2_par	chr6	67036787	12A2p6	cell line	sgMsh2	67036787	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.13	28	0	0	NA	exonic	Gadd45a	nonsynonymous SNV	Gadd45a:NM_007836:exon3:c.T275C:p.V92A	6qC1	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.584390919	2	0.7213671	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	67360537	12A2p6	cell line	sgMsh2	67360537	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	119	0	0	NA	exonic	Il12rb2	nonsynonymous SNV	Il12rb2:NM_008354:exon3:c.A359G:p.K120R	6qC1	chr6-51482144-70356033	4	3	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.260728256	3	0.9734775	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	72631068	12A2p6	cell line	sgMsh2	72631068	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	132	0	0	NA	exonic	Tcf7l1	nonsynonymous SNV	"Tcf7l1:NM_009332:exon10:c.A1192C:p.K398Q,Tcf7l1:NM_001079822:exon11:c.A1234C:p.K412Q"	6qC1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9857176	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	72843033	12A2p6	cell line	sgMsh2	72843033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	43	0	0	NA	exonic	Kcmf1	synonymous SNV	"Kcmf1:NM_001347231:exon7:c.T829C:p.L277L,Kcmf1:NM_019715:exon7:c.T982C:p.L328L"	6qC1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.746222251	1	0.8160563	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr6	73087599	12A2p6	cell line	sgMsh2	73087599	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	265	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon49:c.A7999G:p.N2667D	6qC1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	83038487	12A2p6	cell line	sgMsh2	83038487	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	72	0	0	NA	exonic	Loxl3	synonymous SNV	Loxl3:NM_013586:exon4:c.A573G:p.E191E	6qC3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.507970568	2	0.9763988	AAG	synonymous	NA	NA	NA	NA
22-2_par	chr6	83051525	12A2p6	cell line	sgMsh2	83051525	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	89	0	0	NA	exonic	Htra2	nonsynonymous SNV	Htra2:NM_019752:exon8:c.A1321T:p.I441F	6qC3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	7.72E-07	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	83267421	12A2p6	cell line	sgMsh2	83267421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	99	0	0	NA	exonic	Slc4a5	nonsynonymous SNV	Slc4a5:NM_001166067:exon9:c.G781A:p.A261T	6qC3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9947019	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	85466020	12A2p6	cell line	sgMsh2	85466020	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	129	0	0	NA	exonic	Cct7	nonsynonymous SNV	Cct7:NM_007638:exon8:c.T904C:p.Y302H	6qC3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	2	0.9989543	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	86425480	12A2p6	cell line	sgMsh2	86425480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	339	0	0	NA	exonic	Tia1	nonsynonymous SNV	"Tia1:NM_001164078:exon8:c.T587C:p.V196A,Tia1:NM_001164079:exon8:c.T581C:p.V194A,Tia1:NM_011585:exon9:c.T614C:p.V205A"	6qD1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	6.24E-09	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	86850212	12A2p6	cell line	sgMsh2	86850212	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	61	0	0	NA	exonic	Aak1	nonsynonymous SNV	"Aak1:NM_001040106:exon1:c.G160A:p.E54K,Aak1:NM_001378654:exon1:c.G160A:p.E54K,Aak1:NM_001378655:exon1:c.G160A:p.E54K,Aak1:NM_177762:exon1:c.G160A:p.E54K,Aak1:NM_001378652:exon2:c.G160A:p.E54K"	6qD1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.611362808	2	0.7538202	GGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	92051133	12A2p6	cell line	sgMsh2	92051133	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	88	0	0	NA	exonic	Fgd5	synonymous SNV	Fgd5:NM_172731:exon8:c.C3273T:p.V1091V	6qD1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.436045532	2	0.9552923	TCC	synonymous	NA	NA	NA	NA
22-2_par	chr6	98945566	12A2p6	cell line	sgMsh2	98945566	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	84	0	0	NA	exonic	Foxp1	nonsynonymous SNV	"Foxp1:NM_001197322:exon9:c.A1013G:p.Y338C,Foxp1:NM_001197321:exon12:c.A1304G:p.Y435C,Foxp1:NM_053202:exon13:c.A1400G:p.Y467C,Foxp1:NM_001347345:exon14:c.A1403G:p.Y468C"	6qD3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7288484	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	104776356	12A2p6	cell line	sgMsh2	104776356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	90	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon11:c.T1268C:p.V423A	6qE1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9626526	GTT	nonsynonymous	TGG	8	TGGTGGTG	NA
22-2_par	chr6	108842969	12A2p6	cell line	sgMsh2	108842969	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	177	0	0	NA	exonic	Edem1	synonymous SNV	Edem1:NM_138677:exon4:c.T714C:p.D238D	6qE2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9896858	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr6	112472304	12A2p6	cell line	sgMsh2	112472304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	107	0	0	NA	exonic	Cav3	synonymous SNV	Cav3:NM_007617:exon2:c.T282C:p.C94C	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.840623861	1	0.9998609	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr6	113495618	12A2p6	cell line	sgMsh2	113495618	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	77	0	0	NA	exonic	Prrt3	nonsynonymous SNV	"Prrt3:NM_001289699:exon4:c.T1592C:p.L531P,Prrt3:NM_001289700:exon4:c.T1592C:p.L531P,Prrt3:NM_172487:exon4:c.T1589C:p.L530P"	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.8822992	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	113520490	12A2p6	cell line	sgMsh2	113520490	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	379	0	0	NA	exonic	Emc3	synonymous SNV	Emc3:NM_175101:exon4:c.A399G:p.S133S	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	1.01E-09	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr6	113560173	12A2p6	cell line	sgMsh2	113560173	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	147	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon19:c.G1738A:p.A580T,Fancd2:NM_001347350:exon19:c.G1738A:p.A580T"	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9996444	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	113570930	12A2p6	cell line	sgMsh2	113570930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	92	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon29:c.T2767C:p.F923L,Fancd2:NM_001347350:exon29:c.T2767C:p.F923L"	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.696773789	1	0.8740718	TTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr6	114480678	12A2p6	cell line	sgMsh2	114480678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	74	0	0	NA	exonic	Hrh1	nonsynonymous SNV	"Hrh1:NM_001252642:exon2:c.A919G:p.M307V,Hrh1:NM_001317124:exon2:c.A919G:p.M307V,Hrh1:NM_001317125:exon2:c.A919G:p.M307V,Hrh1:NM_001317126:exon2:c.A919G:p.M307V,Hrh1:NM_001252643:exon3:c.A919G:p.M307V,Hrh1:NM_008285:exon3:c.A919G:p.M307V"	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.651820641	1	0.5076846	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	115774630	12A2p6	cell line	sgMsh2	115774630	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	53	0	0	NA	exonic	Cand2	nonsynonymous SNV	Cand2:NM_025958:exon1:c.A20G:p.Y7C	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9339476	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	116626910	12A2p6	cell line	sgMsh2	116626910	A	T	SNV	Mutect2;Vardict	2	0.083	84	0	0	NA	exonic	Zfp422	nonsynonymous SNV	"Zfp422:NM_001302439:exon2:c.T127A:p.L43M,Zfp422:NM_001302440:exon2:c.T127A:p.L43M,Zfp422:NM_026057:exon2:c.T127A:p.L43M"	6qE3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7288484	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	118429661	12A2p6	cell line	sgMsh2	118429661	T	A	SNV	Mutect2;Vardict	2	0.053	102	0	0	NA	exonic	Zfp248	nonsynonymous SNV	"Zfp248:NM_001361900:exon5:c.A663T:p.Q221H,Zfp248:NM_001361899:exon6:c.A663T:p.Q221H,Zfp248:NM_001361901:exon6:c.A663T:p.Q221H,Zfp248:NM_028335:exon6:c.A966T:p.Q322H"	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9803257	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	118429824	12A2p6	cell line	sgMsh2	118429824	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	215	0	0	NA	exonic	Zfp248	nonsynonymous SNV	"Zfp248:NM_001361900:exon5:c.A500C:p.E167A,Zfp248:NM_001361899:exon6:c.A500C:p.E167A,Zfp248:NM_001361901:exon6:c.A500C:p.E167A,Zfp248:NM_028335:exon6:c.A803C:p.E268A"	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9999957	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	120332004	12A2p6	cell line	sgMsh2	120332004	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	59	0	0	NA	exonic	Ccdc77	synonymous SNV	"Ccdc77:NM_001381937:exon7:c.C693T:p.Y231Y,Ccdc77:NM_001381934:exon9:c.C849T:p.Y283Y,Ccdc77:NM_001381935:exon9:c.C795T:p.Y265Y,Ccdc77:NM_001381936:exon9:c.C795T:p.Y265Y,Ccdc77:NM_001381938:exon9:c.C192T:p.Y64Y,Ccdc77:NM_026028:exon9:c.C849T:p.Y283Y"	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9476417	CGT	synonymous	NA	NA	NA	NA
22-2_par	chr6	120900365	12A2p6	cell line	sgMsh2	120900365	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	22	0	0	NA	exonic	Bid	nonsynonymous SNV	Bid:NM_007544:exon3:c.T14C:p.V5A	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.8687621	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	121221416	12A2p6	cell line	sgMsh2	121221416	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	158	0	0	NA	exonic	Tuba8	synonymous SNV	Tuba8:NM_017379:exon3:c.T342C:p.S114S	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9998804	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr6	121880566	12A2p6	cell line	sgMsh2	121880566	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	128	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon26:c.G3248A:p.R1083Q	6qF1	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.6210429	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	123704409	12A2p6	cell line	sgMsh2	123704409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	143	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon2:c.A275G:p.N92S	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.993464563	1	1.54E-09	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	123823330	12A2p6	cell line	sgMsh2	123823330	A	G	SNV	Mutect2;Vardict	2	0.044	281	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon6:c.T2052C:p.V684V	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999998	CAA	synonymous	CCACAA	12	CCACAACCACAA	NA
22-2_par	chr6	123839752	12A2p6	cell line	sgMsh2	123839752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon3:c.T869C:p.F290S	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9996711	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	125024104	12A2p6	cell line	sgMsh2	125024104	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	72	0	0	NA	exonic	Zfp384	synonymous SNV	"Zfp384:NM_001347452:exon3:c.A138G:p.P46P,Zfp384:NM_001252083:exon4:c.A138G:p.P46P,Zfp384:NM_001372420:exon4:c.A138G:p.P46P,Zfp384:NM_001372422:exon4:c.A138G:p.P46P,Zfp384:NM_001372424:exon4:c.A138G:p.P46P,Zfp384:NM_175557:exon4:c.A138G:p.P46P"	6qF2	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.9435198	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr6	125321994	12A2p6	cell line	sgMsh2	125321994	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	58	0	0	NA	exonic	Scnn1a	synonymous SNV	Scnn1a:NM_011324:exon1:c.T114C:p.C38C	6qF3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.944899	GTC	synonymous	TCC	8	TCCTCCTC	NA
22-2_par	chr6	126102333	12A2p6	cell line	sgMsh2	126102333	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	118	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A209G:p.E70G,Ntf3:NM_008742:exon2:c.A170G:p.E57G,Ntf3:NM_001164034:exon3:c.A209G:p.E70G"	6qF3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.6969714	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	126892097	12A2p6	cell line	sgMsh2	126892097	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	69	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A751G:p.R251G	6qF3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.48099868	2	0.9668348	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	127939169	12A2p6	cell line	sgMsh2	127939169	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	102	0	0	NA	exonic	Tspan11	nonsynonymous SNV	Tspan11:NM_026743:exon5:c.A427T:p.T143S	6qF3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	8.36E-08	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	128495909	12A2p6	cell line	sgMsh2	128495909	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	54	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon19:c.C2496T:p.H832H	6qF3	chr6-70356034-129638907	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	1	0.9503335	AGT	synonymous	NA	NA	NA	NA
22-2_par	chr6	132361834	12A2p6	cell line	sgMsh2	132361834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	178	0	0	NA	exonic	Gm8882	nonsynonymous SNV	Gm8882:NM_001177588:exon3:c.G420T:p.Q140H	6qG1	chr6-129638908-132600902	3	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	0.611362808	2	0.8953143	CCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	132754798	12A2p6	cell line	sgMsh2	132754798	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	125	0	0	NA	exonic	Tas2r124	synonymous SNV	Tas2r124:NM_207026:exon1:c.C69T:p.S23S	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.09839733	GCA	synonymous	NA	NA	NA	NA
22-2_par	chr6	132847999	12A2p6	cell line	sgMsh2	132847999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	220	0	0	NA	exonic	Tas2r123	nonsynonymous SNV	Tas2r123:NM_207025:exon1:c.A858G:p.I286M	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.9593965	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	132868272	12A2p6	cell line	sgMsh2	132868272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	204	0	0	NA	exonic	Tas2r110	nonsynonymous SNV	Tas2r110:NM_199155:exon1:c.T265C:p.S89P	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.8273869	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	135019014	12A2p6	cell line	sgMsh2	135019014	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.218	40	0	0	NA	exonic	Ddx47	nonsynonymous SNV	Ddx47:NM_026360:exon9:c.C938T:p.A313V	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.979978619	1	0.995095	GCG	nonsynonymous	TAAGGC	12	TAAGGCTAAGGC	NA
22-2_par	chr6	135732554	12A2p6	cell line	sgMsh2	135732554	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	74	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon15:c.G3993T:p.M1331I,Grin2b:NM_008171:exon15:c.G3993T:p.M1331I"	6qG1	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.7884836	CCA	nonsynonymous	CCAT	8	CCATCCAT	NA
22-2_par	chr6	140536652	12A2p6	cell line	sgMsh2	140536652	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	108	0	0	NA	exonic	Plekha5	frameshift deletion	Plekha5:NM_144920:exon9:c.719delC:p.H241Tfs*20	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	NA	NA	GCC	frameshift	CCCA	8	CCCACCCA	-1
22-2_par	chr6	140644043	12A2p6	cell line	sgMsh2	140644043	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	218	0	0	NA	exonic	Aebp2	nonsynonymous SNV	"Aebp2:NM_001005605:exon5:c.A1249G:p.K417E,Aebp2:NM_001309436:exon5:c.A583G:p.K195E,Aebp2:NM_001309437:exon5:c.A583G:p.K195E,Aebp2:NM_009637:exon5:c.A1249G:p.K417E,Aebp2:NM_178803:exon5:c.A583G:p.K195E"	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9996023	GAA	nonsynonymous	AGGGA	10	AGGGAAGGGA	NA
22-2_par	chr6	141569527	12A2p6	cell line	sgMsh2	141569527	A	-	Deletion	Strelka2;Vardict	2	0.2143	14	0	0	NA	exonic	Slco1c1	nonframeshift deletion	"Slco1c1:NM_001177772:exon15:c.2144delA:p.X715X,Slco1c1:NM_021471:exon15:c.2147delA:p.X716X"	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.963345954	NA	NA	TAA	inframe	A	9	AAAAAAAAA	-1
22-2_par	chr6	142242071	12A2p6	cell line	sgMsh2	142242071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	182	0	0	NA	exonic	Slco1a5	stopgain	"Slco1a5:NM_001267707:exon12:c.1541delT:p.L514fs*0,Slco1a5:NM_130861:exon12:c.1541delT:p.L514fs*0"	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
22-2_par	chr6	142656643	12A2p6	cell line	sgMsh2	142656643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	432	0	0	NA	exonic	Abcc9	synonymous SNV	"Abcc9:NM_021042:exon16:c.T1938C:p.G646G,Abcc9:NM_001044720:exon17:c.T2043C:p.G681G,Abcc9:NM_001310143:exon17:c.T2043C:p.G681G,Abcc9:NM_011511:exon17:c.T2043C:p.G681G,Abcc9:NM_021041:exon17:c.T2043C:p.G681G"	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr6	142772117	12A2p6	cell line	sgMsh2	142772118	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	83	0	0	NA	exonic	Cmas	frameshift deletion	Cmas:NM_009908:exon7:c.957_958del:p.R320Afs*19	6qG2	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	TGA	frameshift	NA	NA	NA	-2
22-2_par	chr6	143030844	12A2p6	cell line	sgMsh2	143030844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	129	0	0	NA	exonic	C2cd5	synonymous SNV	"C2cd5:NM_001286578:exon18:c.T1608C:p.S536S,C2cd5:NM_001109688:exon19:c.T2175C:p.S725S,C2cd5:NM_001362115:exon19:c.T2202C:p.S734S,C2cd5:NM_029081:exon19:c.T2202C:p.S734S,C2cd5:NM_029897:exon19:c.T2202C:p.S734S,C2cd5:NM_001362114:exon20:c.T2241C:p.S747S,C2cd5:NM_001362117:exon20:c.T2208C:p.S736S,C2cd5:NM_001362118:exon20:c.T1347C:p.S449S,C2cd5:NM_001362113:exon21:c.T2274C:p.S758S,C2cd5:NM_001362116:exon21:c.T2274C:p.S758S"	6qG3	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.97555	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr6	145165245	12A2p6	cell line	sgMsh2	145165245	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	64	0	0	NA	exonic	Lrmp	stopgain	"Lrmp:NM_001361633:exon10:c.A487T:p.K163X,Lrmp:NM_001281980:exon12:c.A775T:p.K259X,Lrmp:NM_001368864:exon12:c.A646T:p.K216X,Lrmp:NM_008511:exon12:c.A775T:p.K259X,Lrmp:NM_001281981:exon13:c.A646T:p.K216X"	6qG3	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6168638	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	146618585	12A2p6	cell line	sgMsh2	146618585	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	126	0	0	NA	exonic	Tm7sf3	nonsynonymous SNV	Tm7sf3:NM_026281:exon6:c.C802A:p.H268N	6qG3	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9988457	TGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	146871179	12A2p6	cell line	sgMsh2	146871179	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	147	0	0	NA	exonic	Smco2	nonsynonymous SNV	Smco2:NM_027059:exon10:c.A878G:p.Y293C	6qG3	chr6-132626356-148425959	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.278709515	3	0.9711699	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr6	148817979	12A2p6	cell line	sgMsh2	148817979	A	G	SNV	Mutect2;Vardict	2	0.048	108	0	0	NA	exonic	Ipo8	nonsynonymous SNV	Ipo8:NM_001081113:exon4:c.T467C:p.L156P	6qG3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	3666943	12A2p6	cell line	sgMsh2	3666943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	30	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon13:c.C1813T:p.R605C	7qA1	chr7-3489139-3717007	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9835404	CGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	3671994	12A2p6	cell line	sgMsh2	3671994	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	36	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon6:c.T878A:p.L293Q	7qA1	chr7-3489139-3717007	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	2	0.009892484	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	3704703	12A2p6	cell line	sgMsh2	3704703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	41	0	0	NA	exonic	Rps9	nonsynonymous SNV	Rps9:NM_029767:exon3:c.A155G:p.K52R	7qA1	chr7-3489139-3717007	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.944016101	1	0.9921135	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	4145479	12A2p6	cell line	sgMsh2	4145479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	44	0	0	NA	exonic	Leng8	nonsynonymous SNV	Leng8:NM_172736:exon15:c.T2249C:p.V750A	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9981245	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	4477645	12A2p6	cell line	sgMsh2	4477645	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	59	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon16:c.C1597T:p.P533S,Eps8l1:NM_001374622:exon16:c.C1780T:p.P594S,Eps8l1:NM_026146:exon16:c.C1597T:p.P533S"	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.9519511	ACC	nonsynonymous	CACCC	10	CACCCCACCC	NA
22-2_par	chr7	4489848	12A2p6	cell line	sgMsh2	4489848	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Ppp1r12c	nonsynonymous SNV	Ppp1r12c:NM_029834:exon4:c.C628T:p.L210F	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9808089	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	6678169	12A2p6	cell line	sgMsh2	6678169	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.124	41	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon8:c.A494G:p.Q165R	7qA1	chr7-3896664-7552161	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.557419031	2	0.8432335	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	10580087	12A2p6	cell line	sgMsh2	10580087	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	51	0	0	NA	exonic	Vmn1r69	nonsynonymous SNV	Vmn1r69:NM_145842:exon1:c.A716C:p.N239T	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9993706	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	11669891	12A2p6	cell line	sgMsh2	11669891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	110	0	0	NA	exonic	Vmn1r72	nonsynonymous SNV	Vmn1r72:NM_145843:exon1:c.A629G:p.Y210C	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.629344067	2	0.6712873	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	11881114	12A2p6	cell line	sgMsh2	11881114	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	219	0	0	NA	exonic	Vmn1r75	nonsynonymous SNV	Vmn1r75:NM_134207:exon1:c.A772G:p.T258A	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9998145	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	13988346	12A2p6	cell line	sgMsh2	13988346	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	202	0	0	NA	exonic	Sult2a4	nonsynonymous SNV	Sult2a4:NM_001101534:exon2:c.A193G:p.I65V	7qA1	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.6331345	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	15757629	12A2p6	cell line	sgMsh2	15757629	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	143	0	0	NA	exonic	Obox5	synonymous SNV	Obox5:NM_145709:exon2:c.G93A:p.R31R	7qA2	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.9600594	GGA	synonymous	NA	NA	NA	NA
22-2_par	chr7	15833554	12A2p6	cell line	sgMsh2	15833554	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	97	0	0	NA	exonic	Obox6	nonsynonymous SNV	Obox6:NM_145710:exon3:c.T967C:p.Y323H	7qA2	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.8555814	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	16248135	12A2p6	cell line	sgMsh2	16248135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	64	0	0	NA	exonic	C5ar1	nonsynonymous SNV	"C5ar1:NM_001173550:exon2:c.T959C:p.I320T,C5ar1:NM_007577:exon3:c.T959C:p.I320T"	7qA2	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.85860512	1	0.99617	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	16336758	12A2p6	cell line	sgMsh2	16336758	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	90	0	0	NA	exonic	Sae1	nonsynonymous SNV	"Sae1:NM_001285891:exon7:c.A826T:p.I276L,Sae1:NM_001285892:exon7:c.A826T:p.I276L,Sae1:NM_019748:exon7:c.A826T:p.I276L"	7qA2	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.997071	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	18475056	12A2p6	cell line	sgMsh2	18475056	A	T	SNV	Mutect2;MuSe;Vardict	3	0.1	206	0	0	NA	exonic	Psg26	stoploss	Psg26:NM_001029893:exon5:c.T1426A:p.X476R	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9996565	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	19141205	12A2p6	cell line	sgMsh2	19141205	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	97	0	0	NA	exonic	Qpctl	synonymous SNV	Qpctl:NM_026111:exon7:c.T1101C:p.H367H	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.9485991	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr7	19164066	12A2p6	cell line	sgMsh2	19164066	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	48	0	0	NA	exonic	Gipr	nonsynonymous SNV	Gipr:NM_001080815:exon4:c.C240G:p.C80W	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	2	0.5903002	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	19223036	12A2p6	cell line	sgMsh2	19223036	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	27	0	0	NA	exonic	Gpr4	synonymous SNV	Gpr4:NM_175668:exon2:c.T882C:p.G294G	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9739448	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr7	23929013	12A2p6	cell line	sgMsh2	23929013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	317	0	0	NA	exonic	Vmn1r179	nonsynonymous SNV	Vmn1r179:NM_207545:exon1:c.A628G:p.T210A	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9999982	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	25773456	12A2p6	cell line	sgMsh2	25773456	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	16	0	0	NA	exonic	Axl	stopgain	"Axl:NM_001190974:exon9:c.T1154A:p.L385X,Axl:NM_009465:exon9:c.T1154A:p.L385X"	7qA3	chr7-8367627-25950707	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.7663362	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	26457190	12A2p6	cell line	sgMsh2	26457190	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	124	0	0	NA	exonic	Nlrp4a	stopgain	"Nlrp4a:NM_001362156:exon7:c.T2339A:p.L780X,Nlrp4a:NM_172896:exon7:c.T2339A:p.L780X"	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.8925772	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	28041811	12A2p6	cell line	sgMsh2	28041811	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	113	0	0	NA	exonic	Psmc4	nonsynonymous SNV	Psmc4:NM_011874:exon11:c.A1253C:p.K418T	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9919336	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	28114030	12A2p6	cell line	sgMsh2	28114030	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	63	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon17:c.T6989C:p.F2330S	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	0.5653357	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	28316125	12A2p6	cell line	sgMsh2	28316125	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.09	69	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon27:c.T2686A:p.Y896N	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.404578329	2	0.837593	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	28317038	12A2p6	cell line	sgMsh2	28317038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	100	0	0	NA	exonic	Supt5	synonymous SNV	Supt5:NM_013676:exon24:c.T2316C:p.Y772Y	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.588886234	2	0.9182084	CAT	synonymous	GAGCCA	12	GAGCCAGAGCCA	NA
22-2_par	chr7	28364613	12A2p6	cell line	sgMsh2	28364613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	46	0	0	NA	exonic	Plekhg2	synonymous SNV	"Plekhg2:NM_001083912:exon14:c.T1407C:p.S469S,Plekhg2:NM_001290542:exon14:c.T1407C:p.S469S,Plekhg2:NM_138752:exon14:c.T1410C:p.S470S"	7qA3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9986269	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr7	28607948	12A2p6	cell line	sgMsh2	28607948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	91	0	0	NA	exonic	Acp7	nonsynonymous SNV	Acp7:NM_175319:exon13:c.T1309C:p.Y437H	7qB1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.6698019	1	0.7044632	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	28988820	12A2p6	cell line	sgMsh2	28988820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	55	0	0	NA	exonic	Map4k1	nonsynonymous SNV	"Map4k1:NM_008279:exon11:c.C794T:p.A265V,Map4k1:NM_001355054:exon12:c.C656T:p.A219V"	7qB1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.732736307	1	0.8529892	GCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	30133520	12A2p6	cell line	sgMsh2	30133520	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	47	0	0	NA	exonic	Zfp382	nonsynonymous SNV	"Zfp382:NM_001081007:exon5:c.T595G:p.S199A,Zfp382:NM_001362158:exon5:c.T592G:p.S198A,Zfp382:NM_001362159:exon5:c.T505G:p.S169A"	7qB1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.678792529	1	0.5837381	ATC	nonsynonymous	GGGA	8	GGGAGGGA	NA
22-2_par	chr7	30512897	12A2p6	cell line	sgMsh2	30512897	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	37	0	0	NA	exonic	Prodh2	nonsynonymous SNV	Prodh2:NM_019546:exon10:c.A1286C:p.N429T	7qB1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9944248	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	34155968	12A2p6	cell line	sgMsh2	34155968	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	49	0	0	NA	exonic	Uba2	nonsynonymous SNV	Uba2:NM_016682:exon9:c.T788C:p.I263T	7qB1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.638334697	2	0.6115005	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	35776479	12A2p6	cell line	sgMsh2	35776479	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	130	0	0	NA	exonic	Zfp507	synonymous SNV	Zfp507:NM_177739:exon6:c.A2418G:p.Q806Q	7qB2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9847459	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr7	43693966	12A2p6	cell line	sgMsh2	43693966	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	75	0	0	NA	exonic	Klk14	nonsynonymous SNV	Klk14:NM_174866:exon3:c.T221C:p.V74A	7qB3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.7112216	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	44533731	12A2p6	cell line	sgMsh2	44533731	T	A	SNV	Mutect2;Vardict	2	0.093	51	0	0	NA	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon24:c.A3014T:p.K1005M	7qB3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.418064273	2	0.8160919	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	45196100	12A2p6	cell line	sgMsh2	45196100	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	19	0	0	NA	exonic	Kash5	nonsynonymous SNV	Kash5:NM_201374:exon4:c.G413A:p.G138E	7qB3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.5781987	TCC	nonsynonymous	CCTGT	11	CCTGTCCTGTC	NA
22-2_par	chr7	45317010	12A2p6	cell line	sgMsh2	45317010	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	38	0	0	NA	exonic	Trpm4	synonymous SNV	Trpm4:NM_175130:exon13:c.C1869T:p.S623S	7qB3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9952271	CGC	synonymous	NA	NA	NA	NA
22-2_par	chr7	45425205	12A2p6	cell line	sgMsh2	45425205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	74	0	0	NA	exonic	Ruvbl2	nonsynonymous SNV	Ruvbl2:NM_011304:exon7:c.A508G:p.T170A	7qB3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.759708195	1	0.9682613	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	51537773	12A2p6	cell line	sgMsh2	51537773	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	135	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon4:c.C166T:p.R56W,Ano5:NM_177694:exon5:c.C208T:p.R70W"	7qB4	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.968916	CCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	51556243	12A2p6	cell line	sgMsh2	51556243	A	G	SNV	Mutect2;Vardict	2	0.1	50	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon8:c.A782G:p.Y261C,Ano5:NM_177694:exon9:c.A824G:p.Y275C"	7qB4	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.8787792	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	56184407	12A2p6	cell line	sgMsh2	56184407	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	80	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon61:c.A9359G:p.E3120G,Herc2:NM_010418:exon61:c.A9359G:p.E3120G"	7qB5	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.7937118	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	56982696	12A2p6	cell line	sgMsh2	56982696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	72	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon5:c.A503G:p.N168S	7qB5	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999763	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	59276558	12A2p6	cell line	sgMsh2	59276558	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	148	0	0	NA	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon4:c.T1083C:p.D361D,Ube3a:NM_011668:exon6:c.T1146C:p.D382D"	7qB5	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	8.02E-09	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr7	65336582	12A2p6	cell line	sgMsh2	65336582	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	74	0	0	NA	exonic	Tjp1	synonymous SNV	"Tjp1:NM_001163574:exon7:c.A777T:p.V259V,Tjp1:NM_009386:exon7:c.A777T:p.V259V"	7qC	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	9.70E-05	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr7	67662478	12A2p6	cell line	sgMsh2	67662478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	26	0	0	NA	exonic	Ttc23	synonymous SNV	"Ttc23:NM_001168475:exon2:c.A132G:p.K44K,Ttc23:NM_001168477:exon2:c.A132G:p.K44K,Ttc23:NM_025905:exon2:c.A132G:p.K44K,Ttc23:NM_001360653:exon3:c.A132G:p.K44K"	7qC	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9696647	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr7	73490646	12A2p6	cell line	sgMsh2	73490646	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	45	0	0	NA	exonic	Chd2	stopgain	Chd2:NM_001081345:exon16:c.G1833A:p.W611X	7qD1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.678792529	1	0.5738631	CCC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	73490665	12A2p6	cell line	sgMsh2	73490665	A	G	SNV	Mutect2;Vardict	2	0.128	36	0	0	NA	exonic	Chd2	nonsynonymous SNV	Chd2:NM_001081345:exon16:c.T1814C:p.V605A	7qD1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.7853406	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	79375579	12A2p6	cell line	sgMsh2	79375579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	38	0	0	NA	exonic	Rlbp1	nonsynonymous SNV	"Rlbp1:NM_001173483:exon9:c.T935C:p.V312A,Rlbp1:NM_001357450:exon9:c.T935C:p.V312A,Rlbp1:NM_020599:exon9:c.T935C:p.V312A"	7qD2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.86759575	1	0.9610225	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	80743127	12A2p6	cell line	sgMsh2	80743127	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	53	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon18:c.A2087G:p.Y696C	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8470402	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	83892366	12A2p6	cell line	sgMsh2	83892366	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	62	0	0	NA	exonic	Mesd	nonsynonymous SNV	Mesd:NM_023403:exon1:c.A77G:p.N26S	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.8897737	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	84275444	12A2p6	cell line	sgMsh2	84275444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	104	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon12:c.T1207C:p.F403L	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.9917962	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	85151698	12A2p6	cell line	sgMsh2	85151698	G	-	Deletion	Strelka2;Vardict	2	0.1026	341	0	0	NA	exonic	Vmn2r67	frameshift deletion	Vmn2r67:NM_001102579:exon3:c.1029delC:p.F344Lfs*19	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.461219295	NA	NA	AGG	frameshift	NA	NA	NA	-1
22-2_par	chr7	85233831	12A2p6	cell line	sgMsh2	85233831	T	A	SNV	Mutect2;Vardict	2	0.031	191	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon3:c.A712T:p.I238F	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.139354758	3	0.9999995	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	85751225	12A2p6	cell line	sgMsh2	85751225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	328	0	0	NA	exonic	Vmn2r72	synonymous SNV	Vmn2r72:NM_001384915:exon3:c.A600G:p.K200K	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9999998	ATT	synonymous	NA	NA	NA	NA
22-2_par	chr7	86386413	12A2p6	cell line	sgMsh2	86386413	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	178	0	0	NA	exonic	Olfr304	synonymous SNV	Olfr304:NM_001011828:exon1:c.T246C:p.N82N	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	0.9999327	TAT	synonymous	NA	NA	NA	NA
22-2_par	chr7	86585315	12A2p6	cell line	sgMsh2	86585315	A	G	SNV	Mutect2;Strelka2	2	0.231	118	0	0	NA	exonic	Olfr295	synonymous SNV	Olfr295:NM_146851:exon1:c.A39G:p.E13E	7qD3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	1.90E-08	AAG	synonymous	T	5	TTTTT	NA
22-2_par	chr7	90401438	12A2p6	cell line	sgMsh2	90401438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	91	0	0	NA	exonic	Sytl2	nonsynonymous SNV	"Sytl2:NM_001040087:exon6:c.A470G:p.N157S,Sytl2:NM_001040088:exon6:c.A350G:p.N117S,Sytl2:NM_001289585:exon7:c.A332G:p.N111S,Sytl2:NM_001289586:exon7:c.A470G:p.N157S,Sytl2:NM_001040085:exon15:c.A2144G:p.N715S,Sytl2:NM_031394:exon15:c.A2072G:p.N691S,Sytl2:NM_001289583:exon16:c.A2192G:p.N731S,Sytl2:NM_001289584:exon16:c.A2111G:p.N704S,Sytl2:NM_001368878:exon16:c.A5801G:p.N1934S"	7qE1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.507970568	2	0.9916916	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	98093523	12A2p6	cell line	sgMsh2	98093523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	21	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon11:c.T1265C:p.I422T,Myo7a:NM_001256081:exon12:c.T1298C:p.I433T,Myo7a:NM_001256082:exon12:c.T1283C:p.I428T,Myo7a:NM_008663:exon12:c.T1298C:p.I433T"	7qE1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9358441	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	98637464	12A2p6	cell line	sgMsh2	98637464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	75	0	0	NA	exonic	Emsy	nonsynonymous SNV	"Emsy:NM_001381868:exon5:c.T403C:p.S135P,Emsy:NM_001381867:exon6:c.T478C:p.S160P,Emsy:NM_001381870:exon6:c.T478C:p.S160P,Emsy:NM_001381869:exon7:c.T520C:p.S174P,Emsy:NM_172280:exon7:c.T520C:p.S174P"	7qE1	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9800979	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	99914335	12A2p6	cell line	sgMsh2	99914335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	57	0	0	NA	exonic	Xrra1	nonsynonymous SNV	Xrra1:NM_001164258:exon15:c.A1528C:p.T510P	7qE2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.570904975	2	0.8819573	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	100480152	12A2p6	cell line	sgMsh2	100480152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	44	0	0	NA	exonic	Ucp3	nonsynonymous SNV	Ucp3:NM_009464:exon3:c.A193G:p.M65V	7qE2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.9698101	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	100880068	12A2p6	cell line	sgMsh2	100880068	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	31	0	0	NA	exonic	Arhgef17	nonsynonymous SNV	Arhgef17:NM_001081116:exon13:c.A4538T:p.N1513I	7qE2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9858883	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	101233971	12A2p6	cell line	sgMsh2	101233971	T	-	Deletion	Strelka2;Vardict	2	0.0565	124	0	0	NA	exonic	Fchsd2	frameshift deletion	"Fchsd2:NM_001146010:exon9:c.805delT:p.L270Yfs*1,Fchsd2:NM_199012:exon9:c.805delT:p.L270Yfs*1"	7qE2	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.253985284	NA	NA	GTT	frameshift	T	5	TTTTT	-1
22-2_par	chr7	102965410	12A2p6	cell line	sgMsh2	102965410	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	146	0	0	NA	exonic	Olfr576	synonymous SNV	Olfr576:NM_001001805:exon1:c.T309C:p.F103F	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.242746997	3	0.9956271	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr7	103098412	12A2p6	cell line	sgMsh2	103098412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	249	0	0	NA	exonic	Olfr585	synonymous SNV	Olfr585:NM_147087:exon1:c.T670C:p.L224L	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	1	CTT	synonymous	TCTTA	11	TCTTATCTTAT	NA
22-2_par	chr7	103346545	12A2p6	cell line	sgMsh2	103346545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	52	0	0	NA	exonic	Olfr600	nonsynonymous SNV	Olfr600:NM_147046:exon1:c.A382G:p.I128V	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.728240992	1	9.96E-05	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	103358821	12A2p6	cell line	sgMsh2	103358821	G	T	SNV	Mutect2;Vardict	2	0.042	146	0	0	NA	exonic	Olfr601	synonymous SNV	Olfr601:NM_146314:exon1:c.C372A:p.R124R	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9997593	AGC	synonymous	NA	NA	NA	NA
22-2_par	chr7	103419136	12A2p6	cell line	sgMsh2	103419136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	72	0	0	NA	exonic	Usp17lc	stoploss	Usp17lc:NM_010089:exon2:c.A1637C:p.X546S	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9999763	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	103938209	12A2p6	cell line	sgMsh2	103938209	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	66	0	0	NA	exonic	Olfr632	synonymous SNV	Olfr632:NM_147119:exon1:c.G828A:p.V276V	7qE3	chr7-26198811-104249043	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.96576	TGC	synonymous	NA	NA	NA	NA
22-2_par	chr7	104671490	12A2p6	cell line	sgMsh2	104671490	T	-	Deletion	Mutect2;Vardict	2	0.06	104	0	0	NA	exonic	Olfr659	frameshift deletion	Olfr659:NM_147050:exon1:c.787delT:p.S264Pfs*27	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	NA	NA	CTT	frameshift	NA	NA	NA	-1
22-2_par	chr7	104893443	12A2p6	cell line	sgMsh2	104893443	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	131	0	0	NA	exonic	Olfr666	nonsynonymous SNV	Olfr666:NM_147096:exon1:c.T184C:p.Y62H	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.202289164	3	0.9988947	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	105625487	12A2p6	cell line	sgMsh2	105625487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	55	0	0	NA	exonic	Trim3	nonsynonymous SNV	"Trim3:NM_001285870:exon2:c.A50G:p.K17R,Trim3:NM_001285871:exon2:c.A50G:p.K17R,Trim3:NM_001285873:exon2:c.A50G:p.K17R,Trim3:NM_001360425:exon2:c.A50G:p.K17R,Trim3:NM_018880:exon2:c.A50G:p.K17R"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.7970043	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	105761947	12A2p6	cell line	sgMsh2	105761947	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	145	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon11:c.T4870C:p.S1624P	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9996756	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	107147891	12A2p6	cell line	sgMsh2	107147891	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	186	0	0	NA	exonic	Olfr716	nonsynonymous SNV	Olfr716:NM_146604:exon1:c.A574G:p.T192A	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.215775109	3	0.9998512	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	107436682	12A2p6	cell line	sgMsh2	107436682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	77	0	0	NA	exonic	Syt9	nonsynonymous SNV	Syt9:NM_021889:exon3:c.A905G:p.K302R	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999891	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	107933835	12A2p6	cell line	sgMsh2	107933835	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	208	0	0	NA	exonic	Olfr473	nonsynonymous SNV	Olfr473:NM_146775:exon1:c.T314A:p.V105E	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9997959	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	108346894	12A2p6	cell line	sgMsh2	108346894	A	G	SNV	Mutect2;MuSe;Vardict	3	0.059	364	0	0	NA	exonic	Olfr493	nonsynonymous SNV	Olfr493:NM_146310:exon1:c.T86C:p.I29T	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9999791	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	108622672	12A2p6	cell line	sgMsh2	108622672	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	165	0	0	NA	exonic	Olfr507	nonsynonymous SNV	Olfr507:NM_146743:exon1:c.A859T:p.I287F	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9983994	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	109170000	12A2p6	cell line	sgMsh2	109170000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	13	0	0	NA	exonic	Lmo1	nonsynonymous SNV	"Lmo1:NM_057173:exon1:c.T8C:p.V3A,Lmo1:NM_001382564:exon2:c.T8C:p.V3A"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.8022143	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	109320824	12A2p6	cell line	sgMsh2	109320824	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	216	0	0	NA	exonic	Stk33	synonymous SNV	"Stk33:NM_001355145:exon9:c.G738A:p.K246K,Stk33:NM_054103:exon12:c.G1107A:p.K369K"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	2	0.9999887	CCT	synonymous	NA	NA	NA	NA
22-2_par	chr7	109933768	12A2p6	cell line	sgMsh2	109933768	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	43	0	0	NA	exonic	Dennd5a	nonsynonymous SNV	"Dennd5a:NM_001311139:exon3:c.T722G:p.V241G,Dennd5a:NM_021494:exon4:c.T794G:p.V265G"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9863384	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	110047134	12A2p6	cell line	sgMsh2	110047134	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	191	0	0	NA	exonic	Ipo7	nonsynonymous SNV	"Ipo7:NM_001362172:exon15:c.T1739C:p.M580T,Ipo7:NM_181517:exon15:c.T1739C:p.M580T"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.9543118	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	110049683	12A2p6	cell line	sgMsh2	110049683	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	99	0	0	NA	exonic	Ipo7	nonsynonymous SNV	"Ipo7:NM_001362172:exon19:c.T2162A:p.M721K,Ipo7:NM_181517:exon19:c.T2162A:p.M721K"	7qE3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	2	0.9943872	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	112053404	12A2p6	cell line	sgMsh2	112053404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	89	0	0	NA	exonic	Usp47	nonsynonymous SNV	"Usp47:NM_001357952:exon2:c.T227C:p.V76A,Usp47:NM_133758:exon2:c.T227C:p.V76A,Usp47:NM_177249:exon3:c.T287C:p.V96A"	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999983	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	113927833	12A2p6	cell line	sgMsh2	113927833	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	99	0	0	NA	exonic	Spon1	frameshift deletion	Spon1:NM_145584:exon6:c.798delA:p.M268Wfs*29	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.777689454	NA	NA	TAA	frameshift	A	5	AAAAA	-1
22-2_par	chr7	114034194	12A2p6	cell line	sgMsh2	114034194	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	99	0	0	NA	exonic	Spon1	nonsynonymous SNV	Spon1:NM_145584:exon14:c.G1871T:p.S624I	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.7618719	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	114521728	12A2p6	cell line	sgMsh2	114521728	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	73	0	0	NA	exonic	Pde3b	nonsynonymous SNV	Pde3b:NM_011055:exon10:c.T2087C:p.F696S	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999797	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	114842171	12A2p6	cell line	sgMsh2	114842171	G	C	SNV	Mutect2;Vardict	2	0.05	141	0	0	NA	exonic	Insc	nonsynonymous SNV	Insc:NM_173767:exon10:c.G1219C:p.D407H	7qF1	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	0.997915	TGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	118760187	12A2p6	cell line	sgMsh2	118760187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	217	0	0	NA	exonic	Vps35l	synonymous SNV	Vps35l:NM_027815:exon8:c.T750C:p.S250S	7qF2	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.615858123	2	0.8882017	GTG	synonymous	NA	NA	NA	NA
22-2_par	chr7	122093640	12A2p6	cell line	sgMsh2	122093640	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	75	0	0	NA	exonic	Ndufab1	nonsynonymous SNV	"Ndufab1:NM_001360743:exon3:c.T356A:p.I119N,Ndufab1:NM_001360744:exon3:c.T356A:p.I119N,Ndufab1:NM_028177:exon3:c.T356A:p.I119N"	7qF2	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.09365151	AAT	nonsynonymous	ATA	8	ATAATAAT	NA
22-2_par	chr7	122170359	12A2p6	cell line	sgMsh2	122170359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	65	0	0	NA	exonic	Ern2	nonsynonymous SNV	"Ern2:NM_001316689:exon21:c.A2521G:p.N841D,Ern2:NM_012016:exon21:c.A2524G:p.N842D"	7qF2	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.9359609	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	122999578	12A2p6	cell line	sgMsh2	122999578	A	C	SNV	Mutect2;Vardict	2	0.089	54	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon17:c.A3111C:p.K1037N	7qF2	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.400083014	2	0.7730846	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	123184237	12A2p6	cell line	sgMsh2	123184237	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	110	0	0	NA	exonic	Tnrc6a	nonsynonymous SNV	Tnrc6a:NM_144925:exon17:c.T4427C:p.V1476A	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	6.41E-07	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	125455192	12A2p6	cell line	sgMsh2	125455192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	60	0	0	NA	exonic	Kdm8	synonymous SNV	Kdm8:NM_029842:exon3:c.A594T:p.L198L	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.818147287	1	0.9844269	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr7	127136672	12A2p6	cell line	sgMsh2	127136672	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	100	0	0	NA	exonic	Spn	nonsynonymous SNV	"Spn:NM_001037810:exon2:c.C662A:p.T221N,Spn:NM_009259:exon2:c.C662A:p.T221N"	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.795670713	1	0.9982619	GGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	127559536	12A2p6	cell line	sgMsh2	127559536	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	42	0	0	NA	exonic	Srcap	synonymous SNV	Srcap:NM_001304266:exon34:c.A8583G:p.S2861S	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.66081127	2	0.5179976	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr7	127723137	12A2p6	cell line	sgMsh2	127723137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	118	0	0	NA	exonic	Ctf2	nonsynonymous SNV	Ctf2:NM_198858:exon2:c.A155G:p.Y52C	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.516961198	2	0.9977443	ATA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	129607078	12A2p6	cell line	sgMsh2	129607078	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	71	0	0	NA	exonic	Wdr11	synonymous SNV	Wdr11:NM_172255:exon9:c.T1272C:p.L424L	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.7711488	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr7	131309710	12A2p6	cell line	sgMsh2	131309710	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	111	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon8:c.T1539G:p.N513K	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.665306585	1	0.7267886	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	131316078	12A2p6	cell line	sgMsh2	131316078	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	106	0	0	NA	exonic	Cuzd1	synonymous SNV	Cuzd1:NM_008411:exon5:c.A792G:p.S264S	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
22-2_par	chr7	135411691	12A2p6	cell line	sgMsh2	135411691	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.143	35	0	0	NA	exonic	Foxi2	nonsynonymous SNV	Foxi2:NM_183193:exon2:c.A595G:p.S199G	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.642830011	2	0.5996134	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	135704610	12A2p6	cell line	sgMsh2	135704610	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	74	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon8:c.T1722A:p.S574R	7qF3	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.525951827	2	0.9745066	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	140652712	12A2p6	cell line	sgMsh2	140652712	A	T	SNV	Mutect2;MuSe;Vardict	3	0.05	569	0	0	NA	exonic	Olfr53	synonymous SNV	Olfr53:NM_146960:exon2:c.A732T:p.S244S	7qF4	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	1.01E-09	CAT	synonymous	NA	NA	NA	NA
22-2_par	chr7	141067611	12A2p6	cell line	sgMsh2	141067611	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	98	0	0	NA	exonic	B4galnt4	nonsynonymous SNV	B4galnt4:NM_177897:exon12:c.A1190G:p.Y397C	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	9.09E-07	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	141362174	12A2p6	cell line	sgMsh2	141362174	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	64	0	0	NA	exonic	Eps8l2	nonsynonymous SNV	Eps8l2:NM_133191:exon21:c.G2128T:p.A710S	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.786680084	1	0.9736132	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	141641528	12A2p6	cell line	sgMsh2	141641528	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	122	0	0	NA	exonic	Muc6	nonsynonymous SNV	"Muc6:NM_001330001:exon30:c.T3869C:p.I1290T,Muc6:NM_001368953:exon30:c.T3869C:p.I1290T"	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.8673993	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	141645461	12A2p6	cell line	sgMsh2	141645461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	46	0	0	NA	exonic	Muc6	synonymous SNV	"Muc6:NM_001330001:exon24:c.C3165A:p.R1055R,Muc6:NM_001368953:exon24:c.C3165A:p.R1055R"	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9986269	AGC	synonymous	NA	NA	NA	NA
22-2_par	chr7	141846063	12A2p6	cell line	sgMsh2	141846063	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	86	0	0	NA	exonic	Muc5b	synonymous SNV	Muc5b:NM_028801:exon11:c.A1272G:p.P424P	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9891816	CAT	synonymous	NA	NA	NA	NA
22-2_par	chr7	142385479	12A2p6	cell line	sgMsh2	142385479	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	102	0	0	NA	exonic	Ctsd	synonymous SNV	Ctsd:NM_009983:exon2:c.T208C:p.L70L	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8858301	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr7	143195323	12A2p6	cell line	sgMsh2	143195323	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	119	0	0	NA	exonic	Kcnq1	nonsynonymous SNV	Kcnq1:NM_008434:exon10:c.T1309C:p.F437L	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.756021	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr7	143524699	12A2p6	cell line	sgMsh2	143524699	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	155	0	0	NA	exonic	Nap1l4	nonsynonymous SNV	"Nap1l4:NM_001285489:exon11:c.T910C:p.S304P,Nap1l4:NM_001285490:exon11:c.T910C:p.S304P,Nap1l4:NM_008672:exon11:c.T910C:p.S304P"	7qF5	chr7-104330969-145323643	3	2	1	0.9	4.045783288	POOR GOF (76.7%)	1	0.29219546	3	0.9501331	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	9972132	12A2p6	cell line	sgMsh2	9972132	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	119	0	0	NA	exonic	Lig4	nonsynonymous SNV	"Lig4:NM_001377042:exon2:c.A1647G:p.I549M,Lig4:NM_176953:exon2:c.A1647G:p.I549M"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.305681404	3	0.8362291	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	12585727	12A2p6	cell line	sgMsh2	12585727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	127	0	0	NA	exonic	Spaca7	nonsynonymous SNV	"Spaca7:NM_001357297:exon3:c.T242C:p.V81A,Spaca7:NM_024279:exon3:c.T242C:p.V81A"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.926034841	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	12812354	12A2p6	cell line	sgMsh2	12812354	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	201	0	0	NA	exonic	Atp11a	nonsynonymous SNV	"Atp11a:NM_001293667:exon3:c.T205C:p.F69L,Atp11a:NM_001293668:exon3:c.T205C:p.F69L,Atp11a:NM_015804:exon3:c.T205C:p.F69L"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9996187	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	14839759	12A2p6	cell line	sgMsh2	14839759	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	143	0	0	NA	exonic	Dlgap2	nonsynonymous SNV	"Dlgap2:NM_001145965:exon13:c.A2780T:p.Q927L,Dlgap2:NM_172910:exon14:c.A2777T:p.Q926L"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.9499115	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	14954487	12A2p6	cell line	sgMsh2	14954487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	148	0	0	NA	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon11:c.T1121C:p.V374A,Arhgef10:NM_172751:exon12:c.T1238C:p.V413A"	8qA1.1	chr8-3154030-19497986	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9932294	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	21250373	12A2p6	cell line	sgMsh2	21250373	A	G	SNV	Mutect2;Vardict	2	0.044	632	0	0	NA	exonic	Defa40	nonsynonymous SNV	Defa40:NM_001177487:exon2:c.A194G:p.Y65C	8qA2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.19779385	3	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	21940759	12A2p6	cell line	sgMsh2	21940759	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	exonic	Defb35	nonsynonymous SNV	Defb35:NM_139224:exon2:c.G148T:p.G50C	8qA2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	1.01E-09	GGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	22020823	12A2p6	cell line	sgMsh2	22020823	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	107	0	0	NA	exonic	Atp7b	synonymous SNV	Atp7b:NM_007511:exon4:c.C1651T:p.L551L	8qA2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.413568958	2	0.9430872	AGG	synonymous	NA	NA	NA	NA
22-2_par	chr8	24872603	12A2p6	cell line	sgMsh2	24872603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	152	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon16:c.T1805C:p.V602A,Adam32:NM_153397:exon16:c.T1805C:p.V602A"	8qA2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9974616	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	31128646	12A2p6	cell line	sgMsh2	31128646	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	93	0	0	NA	exonic	Rnf122	nonsynonymous SNV	"Rnf122:NM_001368373:exon6:c.A451G:p.T151A,Rnf122:NM_001368374:exon6:c.A448G:p.T150A,Rnf122:NM_001368375:exon6:c.A421G:p.T141A,Rnf122:NM_175136:exon6:c.A418G:p.T140A"	8qA3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999991	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	31166411	12A2p6	cell line	sgMsh2	31166411	A	G	SNV	Mutect2;Strelka2	2	0.06	112	0	0	NA	exonic	Mak16	nonsynonymous SNV	Mak16:NM_026453:exon4:c.T203C:p.I68T	8qA3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9529966	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	31166414	12A2p6	cell line	sgMsh2	31166414	A	G	SNV	Mutect2;Strelka2	2	0.06	112	0	0	NA	exonic	Mak16	nonsynonymous SNV	Mak16:NM_026453:exon4:c.T200C:p.V67A	8qA3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	3	0.9529966	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	31917918	12A2p6	cell line	sgMsh2	31917918	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	110	0	0	NA	exonic	Nrg1	nonsynonymous SNV	"Nrg1:NM_001364422:exon1:c.A286G:p.K96E,Nrg1:NM_001364423:exon1:c.A286G:p.K96E,Nrg1:NM_001364424:exon1:c.A286G:p.K96E,Nrg1:NM_001364426:exon1:c.A286G:p.K96E,Nrg1:NM_001364427:exon1:c.A286G:p.K96E,Nrg1:NM_001364428:exon1:c.A286G:p.K96E,Nrg1:NM_001364431:exon1:c.A286G:p.K96E,Nrg1:NM_178591:exon1:c.A286G:p.K96E"	8qA3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.5986771	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	43130576	12A2p6	cell line	sgMsh2	43130576	T	C	SNV	Mutect2;Vardict	2	0.098	49	0	0	NA	exonic	Triml1	synonymous SNV	Triml1:NM_177742:exon6:c.A987G:p.R329R	8qA4	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.008873063	ATC	synonymous	NA	NA	NA	NA
22-2_par	chr8	43141020	12A2p6	cell line	sgMsh2	43141020	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	102	0	0	NA	exonic	Triml1	nonsynonymous SNV	Triml1:NM_177742:exon1:c.A373G:p.S125G	8qA4	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6194368	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	44952187	12A2p6	cell line	sgMsh2	44952187	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	84	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon1:c.A1974T:p.L658F	8qB1.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999964	TAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	46020681	12A2p6	cell line	sgMsh2	46020681	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	169	0	0	NA	exonic	Lrp2bp	synonymous SNV	Lrp2bp:NM_026278:exon6:c.T510A:p.A170A	8qB1.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.206784479	3	0.9998068	CTA	synonymous	NA	NA	NA	NA
22-2_par	chr8	48228880	12A2p6	cell line	sgMsh2	48228880	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	72	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon27:c.G7666A:p.E2556K,Tenm3:NM_011857:exon29:c.G7714A:p.E2572K"	8qB1.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	0.7293474	TCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	54672562	12A2p6	cell line	sgMsh2	54672562	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	137	0	0	NA	exonic	Wdr17	nonsynonymous SNV	"Wdr17:NM_001372376:exon5:c.A220G:p.I74V,Wdr17:NM_001372374:exon6:c.A745G:p.I249V,Wdr17:NM_001372375:exon7:c.A508G:p.I170V,Wdr17:NM_001364215:exon8:c.A1060G:p.I354V,Wdr17:NM_001172152:exon9:c.A1282G:p.I428V,Wdr17:NM_001372373:exon9:c.A1282G:p.I428V,Wdr17:NM_001372370:exon10:c.A1354G:p.I452V,Wdr17:NM_001372371:exon10:c.A1354G:p.I452V,Wdr17:NM_001372372:exon10:c.A1354G:p.I452V,Wdr17:NM_028220:exon10:c.A1303G:p.I435V"	8qB1.3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9135385	ATG	nonsynonymous	GCAAT	10	GCAATGCAAT	NA
22-2_par	chr8	57513365	12A2p6	cell line	sgMsh2	57513365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	18	0	0	NA	exonic	Hmgb2	synonymous SNV	"Hmgb2:NM_001363443:exon4:c.T372C:p.D124D,Hmgb2:NM_001363444:exon4:c.T372C:p.D124D,Hmgb2:NM_001363445:exon4:c.T372C:p.D124D,Hmgb2:NM_008252:exon4:c.T372C:p.D124D"	8qB2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.0981288	ATA	synonymous	NA	NA	NA	NA
22-2_par	chr8	58427862	12A2p6	cell line	sgMsh2	58427862	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	121	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon4:c.A391C:p.K131Q	8qB2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.8871436	TTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	66680852	12A2p6	cell line	sgMsh2	66680852	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	176	0	0	NA	exonic	Npy5r	nonsynonymous SNV	"Npy5r:NM_001358957:exon2:c.T1288C:p.C430R,Npy5r:NM_001358958:exon2:c.T1288C:p.C430R,Npy5r:NM_016708:exon2:c.T1288C:p.C430R"	8qB3.1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.6780224	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	67817968	12A2p6	cell line	sgMsh2	67817968	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.132	51	0	0	NA	exonic	Psd3	nonsynonymous SNV	Psd3:NM_027626:exon1:c.T139C:p.F47L	8qB3.2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.593381549	2	0.8012757	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	69040265	12A2p6	cell line	sgMsh2	69040265	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	69	0	0	NA	exonic	Slc18a1	nonsynonymous SNV	Slc18a1:NM_153054:exon16:c.C1431A:p.N477K	8qB3.3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.8901015	GGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	69303062	12A2p6	cell line	sgMsh2	69303062	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	91	0	0	NA	exonic	D130040H23Rik	nonsynonymous SNV	D130040H23Rik:NM_172491:exon6:c.A1118T:p.Y373F	8qB3.3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.350634552	2	6.11E-06	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	77562465	12A2p6	cell line	sgMsh2	77562465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	257	0	0	NA	exonic	Prmt9	synonymous SNV	Prmt9:NM_001081240:exon5:c.A795G:p.G265G	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.9202491	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr8	78505786	12A2p6	cell line	sgMsh2	78505786	A	G	SNV	Mutect2;MuSe;Vardict	3	0.071	277	0	0	NA	exonic	Rbmxl1	synonymous SNV	"Rbmxl1:NM_001252089:exon2:c.T927C:p.D309D,Rbmxl1:NM_001358974:exon2:c.T927C:p.D309D,Rbmxl1:NM_001358975:exon2:c.T927C:p.D309D,Rbmxl1:NM_009033:exon2:c.T927C:p.D309D"	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.319167348	3	0.9339897	AAT	synonymous	ATC	8	ATCATCAT	NA
22-2_par	chr8	79178979	12A2p6	cell line	sgMsh2	79178979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	143	0	0	NA	exonic	Zfp827	nonsynonymous SNV	"Zfp827:NM_001294279:exon10:c.A2584G:p.T862A,Zfp827:NM_178267:exon10:c.A2584G:p.T862A"	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.37760644	2	9.54E-08	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	79669369	12A2p6	cell line	sgMsh2	79669369	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	55	0	0	NA	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon18:c.T1767C:p.T589T,Otud4:NM_001256033:exon18:c.T1770C:p.T590T"	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.373111125	2	0.000881219	CTG	synonymous	NA	NA	NA	NA
22-2_par	chr8	79701199	12A2p6	cell line	sgMsh2	79701199	T	C	SNV	Mutect2;Vardict	2	0.051	97	0	0	NA	exonic	Abce1	synonymous SNV	Abce1:NM_015751:exon6:c.A459G:p.Q153Q	8qC1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9825356	TTT	synonymous	NA	NA	NA	NA
22-2_par	chr8	80613857	12A2p6	cell line	sgMsh2	80613857	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	125	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.G2778T:p.Q926H	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9880489	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	81768145	12A2p6	cell line	sgMsh2	81768145	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	111	0	0	NA	exonic	Inpp4b	nonsynonymous SNV	"Inpp4b:NM_001297591:exon5:c.T188A:p.V63D,Inpp4b:NM_001297596:exon5:c.T188A:p.V63D,Inpp4b:NM_001024617:exon6:c.T188A:p.V63D"	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.409073644	2	0.9383311	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	82990512	12A2p6	cell line	sgMsh2	82990512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	69	0	0	NA	exonic	Rnf150	nonsynonymous SNV	Rnf150:NM_177378:exon2:c.T647C:p.I216T	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.9470347	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	83221480	12A2p6	cell line	sgMsh2	83221480	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	175	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_001111304:exon3:c.A284C:p.E95A,Tbc1d9:NM_027758:exon3:c.A284C:p.E95A"	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.251737627	3	0.9974284	GAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	84098870	12A2p6	cell line	sgMsh2	84098870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	44	0	0	NA	exonic	Dcaf15	synonymous SNV	"Dcaf15:NM_001357322:exon7:c.A1107G:p.V369V,Dcaf15:NM_172502:exon7:c.A1107G:p.V369V"	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	1	0.9981245	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr8	84135096	12A2p6	cell line	sgMsh2	84135096	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	125	0	0	NA	exonic	Cc2d1a	nonsynonymous SNV	"Cc2d1a:NM_001381872:exon20:c.A1963G:p.T655A,Cc2d1a:NM_001381871:exon21:c.A2167G:p.T723A,Cc2d1a:NM_001381873:exon21:c.A2074G:p.T692A,Cc2d1a:NM_145970:exon21:c.A2170G:p.T724A"	8qC2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9880489	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	85050405	12A2p6	cell line	sgMsh2	85050405	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	151	0	0	NA	exonic	Tnpo2	nonsynonymous SNV	"Tnpo2:NM_001122843:exon14:c.T1543A:p.Y515N,Tnpo2:NM_001364031:exon14:c.T1543A:p.Y515N,Tnpo2:NM_001364032:exon14:c.T1543A:p.Y515N,Tnpo2:NM_001364033:exon14:c.T1543A:p.Y515N,Tnpo2:NM_001364034:exon14:c.T1543A:p.Y515N,Tnpo2:NM_001379096:exon14:c.T1543A:p.Y515N,Tnpo2:NM_145390:exon14:c.T1543A:p.Y515N"	8qC3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.18880322	3	0.9998202	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	86725792	12A2p6	cell line	sgMsh2	86725792	C	T	SNV	Mutect2;Vardict	2	0.032	209	0	0	NA	exonic	Siah1a	synonymous SNV	Siah1a:NM_009172:exon2:c.G63A:p.R21R	8qC3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.143850072	3	0.9999998	CCC	synonymous	NA	NA	NA	NA
22-2_par	chr8	87586126	12A2p6	cell line	sgMsh2	87586126	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	46	0	0	NA	exonic	4933402J07Rik	synonymous SNV	4933402J07Rik:NM_177901:exon5:c.A538C:p.R180R	8qC3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.8485996	GAG	synonymous	NA	NA	NA	NA
22-2_par	chr8	88164910	12A2p6	cell line	sgMsh2	88164910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	128	0	0	NA	exonic	Heatr3	nonsynonymous SNV	Heatr3:NM_172757:exon13:c.T1619C:p.M540T	8qC3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.458522106	2	0.9956629	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	88252565	12A2p6	cell line	sgMsh2	88252565	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	63	0	0	NA	exonic	Tent4b	nonsynonymous SNV	"Tent4b:NM_001164499:exon10:c.A1564T:p.S522C,Tent4b:NM_001372333:exon10:c.A1753T:p.S585C,Tent4b:NM_001164497:exon11:c.A1693T:p.S565C,Tent4b:NM_001164498:exon11:c.A1693T:p.S565C"	8qC3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.9296459	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	90254290	12A2p6	cell line	sgMsh2	90254290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	56	0	0	NA	exonic	Tox3	synonymous SNV	Tox3:NM_172913:exon5:c.G888A:p.G296G	8qC4	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.427054903	2	0.8587764	CCC	synonymous	NA	NA	NA	NA
22-2_par	chr8	92840521	12A2p6	cell line	sgMsh2	92840521	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	104	0	0	NA	exonic	Mmp2	nonsynonymous SNV	Mmp2:NM_008610:exon9:c.T1468C:p.F490L	8qC5	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6208807	CTT	nonsynonymous	TCT	11	TCTTCTTCTTC	NA
22-2_par	chr8	93069346	12A2p6	cell line	sgMsh2	93069346	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	96	0	0	NA	exonic	Ces1b	nonsynonymous SNV	"Ces1b:NM_001081372:exon6:c.G725A:p.R242K,Ces1b:NM_001381922:exon6:c.G725A:p.R242K"	8qC5	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.8699628	TCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	94575712	12A2p6	cell line	sgMsh2	94575712	A	G	SNV	Mutect2;Vardict	2	0.069	90	0	0	NA	exonic	Psme3ip1	synonymous SNV	"Psme3ip1:NM_001363456:exon8:c.T690C:p.S230S,Psme3ip1:NM_028221:exon8:c.T690C:p.S230S"	8qC5	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.7391142	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr8	95313148	12A2p6	cell line	sgMsh2	95313148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	73	0	0	NA	exonic	Tepp	synonymous SNV	Tepp:NM_199455:exon2:c.A192G:p.E64E	8qC5	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9999797	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr8	95368089	12A2p6	cell line	sgMsh2	95368089	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	119	0	0	NA	exonic	Mmp15	nonsynonymous SNV	Mmp15:NM_008609:exon4:c.T590C:p.F197S	8qC5	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	8.43E-08	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	102650681	12A2p6	cell line	sgMsh2	102650681	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	81	0	0	NA	exonic	Cdh11	synonymous SNV	Cdh11:NM_009866:exon9:c.A1332G:p.K444K	8qD1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.521456513	2	0.9833191	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr8	104138242	12A2p6	cell line	sgMsh2	104138242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	104	0	0	NA	exonic	Cdh5	synonymous SNV	Cdh5:NM_009868:exon10:c.A1491G:p.V497V	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.9999327	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr8	104628503	12A2p6	cell line	sgMsh2	104628503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	50	0	0	NA	exonic	Rrad	nonsynonymous SNV	Rrad:NM_019662:exon5:c.A872G:p.K291R	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.692278474	1	0.6648723	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	104741267	12A2p6	cell line	sgMsh2	104741267	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	164	0	0	NA	exonic	Ces2a	synonymous SNV	"Ces2a:NM_001190330:exon11:c.T1429C:p.L477L,Ces2a:NM_133960:exon12:c.T1528C:p.L510L"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.193298535	3	0.9998893	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr8	104837352	12A2p6	cell line	sgMsh2	104837352	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	152	0	0	NA	exonic	Ces2b	nonsynonymous SNV	Ces2b:NM_198171:exon10:c.G1357A:p.D453N	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.296690774	3	0.9330729	TGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	105056408	12A2p6	cell line	sgMsh2	105056408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	205	0	0	NA	exonic	Ces3a	nonsynonymous SNV	"Ces3a:NM_001164681:exon9:c.A1027G:p.T343A,Ces3a:NM_198672:exon10:c.A1168G:p.T390A"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.323662663	3	0.8286029	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	105337757	12A2p6	cell line	sgMsh2	105337757	A	G	SNV	Mutect2;Vardict	2	0.053	107	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon6:c.T560C:p.L187P	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.238251683	3	0.9838369	CAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	105379095	12A2p6	cell line	sgMsh2	105379095	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	31	0	0	NA	exonic	Plekhg4	nonsynonymous SNV	"Plekhg4:NM_001081333:exon12:c.T2083G:p.C695G,Plekhg4:NM_001364406:exon14:c.T2191G:p.C731G"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	0.9858883	CTG	nonsynonymous	ACTG	8	ACTGACTG	NA
22-2_par	chr8	105383021	12A2p6	cell line	sgMsh2	105383021	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.096	102	0	0	NA	exonic	Kctd19	nonsynonymous SNV	"Kctd19:NM_001301173:exon16:c.A2719G:p.I907V,Kctd19:NM_177791:exon17:c.A2788G:p.I930V"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.9663844	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	106656897	12A2p6	cell line	sgMsh2	106656897	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.186	70	0	0	NA	exonic	Cdh1	nonsynonymous SNV	Cdh1:NM_009864:exon6:c.A767C:p.D256A	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.836128546	1	0.9958089	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	106874370	12A2p6	cell line	sgMsh2	106874370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	121	0	0	NA	exonic	Has3	nonsynonymous SNV	"Has3:NM_001331048:exon2:c.A463G:p.N155D,Has3:NM_008217:exon2:c.A463G:p.N155D"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.534942457	2	0.996023	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	107358751	12A2p6	cell line	sgMsh2	107358751	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	150	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon9:c.T1621C:p.Y541H,Nfat5:NM_018823:exon10:c.T1675C:p.Y559H,Nfat5:NM_133957:exon11:c.T1393C:p.Y465H"	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	3	0.9999739	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	108793026	12A2p6	cell line	sgMsh2	108793026	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	131	0	0	NA	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon2:c.T779C:p.V260A	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9973697	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	108948148	12A2p6	cell line	sgMsh2	108948148	T	G	SNV	Mutect2;Vardict	2	0.13	24	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.T5829G:p.A1943A	8qD3	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.584390919	2	0.07110124	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr8	111187821	12A2p6	cell line	sgMsh2	111187821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	91	0	0	NA	exonic	Glg1	nonsynonymous SNV	"Glg1:NM_001368315:exon8:c.A1330G:p.I444V,Glg1:NM_009149:exon8:c.A1330G:p.I444V"	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.921539527	1	0.9999748	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	121886367	12A2p6	cell line	sgMsh2	121886367	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	83	0	0	NA	exonic	Slc7a5	nonsynonymous SNV	Slc7a5:NM_011404:exon6:c.A971T:p.H324L	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.7780079	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	122898658	12A2p6	cell line	sgMsh2	122898658	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	84	0	0	NA	exonic	Ankrd11	synonymous SNV	Ankrd11:NM_001081379:exon7:c.G660A:p.L220L	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.355129866	2	0.6063425	ACA	synonymous	NA	NA	NA	NA
22-2_par	chr8	123269053	12A2p6	cell line	sgMsh2	123269053	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	70	0	0	NA	exonic	Fanca	frameshift deletion	Fanca:NM_016925:exon41:c.4009delG:p.A1337Pfs*42	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	NA	NA	GCC	frameshift	NA	NA	NA	-1
22-2_par	chr8	123456451	12A2p6	cell line	sgMsh2	123456451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	130	0	0	NA	exonic	Def8	nonsynonymous SNV	"Def8:NM_001281803:exon7:c.A716G:p.Y239C,Def8:NM_054046:exon7:c.A716G:p.Y239C,Def8:NM_001253784:exon8:c.A752G:p.Y251C,Def8:NM_001253783:exon9:c.A788G:p.Y263C"	8qE1	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.714755048	1	0.981561	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	123930972	12A2p6	cell line	sgMsh2	123930972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	223	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon10:c.T1223C:p.V408A	8qE2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.8772685	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	124730951	12A2p6	cell line	sgMsh2	124730951	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	63	0	0	NA	exonic	Arv1	nonsynonymous SNV	"Arv1:NM_001368372:exon4:c.A593G:p.Y198C,Arv1:NM_026855:exon4:c.A593G:p.Y198C"	8qE2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.9573629	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	128425765	12A2p6	cell line	sgMsh2	128425765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	48	0	0	NA	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon4:c.A454G:p.T152A,Nrp1:NM_001358960:exon4:c.A454G:p.T152A,Nrp1:NM_008737:exon4:c.A454G:p.T152A"	8qE2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.970987989	1	0.9981868	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr8	128476196	12A2p6	cell line	sgMsh2	128476196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	47	0	0	NA	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon10:c.T1661G:p.F554C,Nrp1:NM_001358960:exon10:c.T1661G:p.F554C,Nrp1:NM_008737:exon10:c.T1661G:p.F554C"	8qE2	chr8-19751908-129027034	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.746222251	1	0.8434975	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	7052630	12A2p6	cell line	sgMsh2	7052630	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	93	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon60:c.A9368C:p.E3123A	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.8445599	TTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	7561618	12A2p6	cell line	sgMsh2	7561618	C	T	SNV	Mutect2;Vardict	2	0.039	125	0	0	NA	exonic	Mmp8	synonymous SNV	Mmp8:NM_008611:exon4:c.C543T:p.A181A	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.175317276	3	0.9995607	CCC	synonymous	NA	NA	NA	NA
22-2_par	chr9	7561630	12A2p6	cell line	sgMsh2	7561630	A	G	SNV	Mutect2;Vardict	2	0.041	119	0	0	NA	exonic	Mmp8	synonymous SNV	Mmp8:NM_008611:exon4:c.A555G:p.Q185Q	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.999048	AAC	synonymous	NA	NA	NA	NA
22-2_par	chr9	14357015	12A2p6	cell line	sgMsh2	14357015	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	59	0	0	NA	exonic	Endod1	synonymous SNV	Endod1:NM_028013:exon2:c.T1173C:p.I391I	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.391092385	2	0.756504	CAA	synonymous	NA	NA	NA	NA
22-2_par	chr9	14761631	12A2p6	cell line	sgMsh2	14761631	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	62	0	0	NA	exonic	1700012B09Rik	nonsynonymous SNV	1700012B09Rik:NM_029306:exon3:c.A335G:p.Y112C	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5395947	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	18312905	12A2p6	cell line	sgMsh2	18312905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	97	0	0	NA	exonic	Chordc1	nonsynonymous SNV	Chordc1:NM_025844:exon11:c.A980G:p.K327R	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.512465883	2	0.9937466	AAA	nonsynonymous	A	5	AAAAA	NA
22-2_par	chr9	19712866	12A2p6	cell line	sgMsh2	19712866	T	C	SNV	Mutect2;Vardict	2	0.061	151	0	0	NA	exonic	Olfr857	nonsynonymous SNV	Olfr857:NM_001012265:exon1:c.T38C:p.I13T	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.9795242	ATT	nonsynonymous	ATTC	8	ATTCATTC	NA
22-2_par	chr9	19920913	12A2p6	cell line	sgMsh2	19920913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	116	0	0	NA	exonic	Olfr77	nonsynonymous SNV	Olfr77:NM_146339:exon3:c.T703C:p.Y235H	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.683287844	1	0.8737038	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	21990935	12A2p6	cell line	sgMsh2	21990935	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	244	0	0	NA	exonic	Ccdc151	nonsynonymous SNV	"Ccdc151:NM_001163787:exon11:c.A1448T:p.K483M,Ccdc151:NM_029939:exon11:c.A1445T:p.K482M"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.9998171	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	22334009	12A2p6	cell line	sgMsh2	22334009	C	T	SNV	Mutect2;Vardict	2	0.033	199	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon23:c.G3235A:p.V1079I	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.148345387	3	0.9999994	ACA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	26990172	12A2p6	cell line	sgMsh2	26990172	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	241	0	0	NA	exonic	Acad8	nonsynonymous SNV	Acad8:NM_025862:exon5:c.T509C:p.L170P	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.265223571	3	0.9991557	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	27063823	12A2p6	cell line	sgMsh2	27063823	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	159	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	Ncapd3:NM_178113:exon19:c.A2276G:p.H759R	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9965408	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	30440212	12A2p6	cell line	sgMsh2	30440212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	181	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon8:c.A2575G:p.T859A	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5322593	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	30440214	12A2p6	cell line	sgMsh2	30440214	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	179	0	0	NA	exonic	Snx19	synonymous SNV	Snx19:NM_028874:exon8:c.A2577G:p.T859T	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.247242312	3	0.9983372	CAC	synonymous	NA	NA	NA	NA
22-2_par	chr9	30921518	12A2p6	cell line	sgMsh2	30921518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	0	0	NA	exonic	Adamts15	synonymous SNV	Adamts15:NM_001024139:exon1:c.T720C:p.H240H	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.899062953	1	0.9847235	AAT	synonymous	NA	NA	NA	NA
22-2_par	chr9	31405629	12A2p6	cell line	sgMsh2	31405629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	100	0	0	NA	exonic	Nfrkb	nonsynonymous SNV	"Nfrkb:NM_001359654:exon17:c.T1094C:p.F365S,Nfrkb:NM_172766:exon17:c.T1823C:p.F608S"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.570904975	2	0.9599649	TTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	35189172	12A2p6	cell line	sgMsh2	35189172	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	109	0	0	NA	exonic	Tirap	nonsynonymous SNV	"Tirap:NM_001177845:exon6:c.C215A:p.P72H,Tirap:NM_001177846:exon6:c.C215A:p.P72H,Tirap:NM_001177847:exon6:c.C215A:p.P72H,Tirap:NM_054096:exon6:c.C215A:p.P72H"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.431550217	2	0.9728307	GGG	nonsynonymous	G	5	GGGGG	NA
22-2_par	chr9	35452863	12A2p6	cell line	sgMsh2	35452863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	101	0	0	NA	exonic	Cdon	synonymous SNV	Cdon:NM_021339:exon2:c.T276C:p.G92G	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.886145	GTT	synonymous	NA	NA	NA	NA
22-2_par	chr9	35452922	12A2p6	cell line	sgMsh2	35452922	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	57	0	0	NA	exonic	Cdon	nonsynonymous SNV	Cdon:NM_021339:exon2:c.T335A:p.V112E	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.57540029	2	0.8713377	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	35503309	12A2p6	cell line	sgMsh2	35503309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	100	0	0	NA	exonic	Cdon	nonsynonymous SNV	Cdon:NM_021339:exon18:c.A3479C:p.D1160A	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.56640966	2	0.9666129	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	36698553	12A2p6	cell line	sgMsh2	36698553	T	C	SNV	Mutect2;Strelka2	2	0.041	114	0	0	NA	exonic	Acrv1	nonsynonymous SNV	Acrv1:NM_007391:exon4:c.T719C:p.L240P	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.184307905	3	0.9987159	CTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	37772926	12A2p6	cell line	sgMsh2	37772926	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	217	0	0	NA	exonic	Olfr875	nonsynonymous SNV	Olfr875:NM_146749:exon1:c.A266G:p.N89S	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.161831332	3	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	38431000	12A2p6	cell line	sgMsh2	38431000	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	80	0	0	NA	exonic	Olfr901	synonymous SNV	Olfr901:NM_001011806:exon1:c.T717C:p.S239S	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.692278474	1	0.8107192	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr9	38594849	12A2p6	cell line	sgMsh2	38594849	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	127	0	0	NA	exonic	Olfr913	synonymous SNV	Olfr913:NM_001011523:exon2:c.A627G:p.V209V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.337148607	3	0.5691169	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr9	39461814	12A2p6	cell line	sgMsh2	39461814	G	T	SNV	Mutect2;Vardict	2	0.034	310	0	0	NA	exonic	Olfr954	nonsynonymous SNV	Olfr954:NM_146331:exon1:c.G382T:p.A128S	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.152840702	3	1.28E-09	TGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	40022813	12A2p6	cell line	sgMsh2	40022813	T	C	SNV	Mutect2;Vardict	2	0.04	162	0	0	NA	exonic	Olfr981	nonsynonymous SNV	Olfr981:NM_146286:exon1:c.T419C:p.V140A	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.179812591	3	0.9999446	GTC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	40101128	12A2p6	cell line	sgMsh2	40101128	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	54	0	0	NA	exonic	Olfr984	nonsynonymous SNV	Olfr984:NM_146608:exon1:c.G361A:p.D121N	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.000857738	TCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	40803007	12A2p6	cell line	sgMsh2	40803007	T	C	SNV	Mutect2;Vardict	2	0.057	88	0	0	NA	exonic	Hspa8	synonymous SNV	"Hspa8:NM_001364480:exon5:c.T541C:p.L181L,Hspa8:NM_031165:exon5:c.T598C:p.L200L"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.256232942	3	0.9407375	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr9	42366732	12A2p6	cell line	sgMsh2	42366732	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	176	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon11:c.A3479G:p.Q1160R,Tecta:NM_009347:exon11:c.A3479G:p.Q1160R,Tecta:NM_001378602:exon12:c.A3479G:p.Q1160R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.233756368	3	0.9992256	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	44296569	12A2p6	cell line	sgMsh2	44296569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	75	0	0	NA	exonic	Hinfp	nonsynonymous SNV	Hinfp:NM_172162:exon10:c.A1139G:p.H380R	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.719250362	1	0.8988818	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	44335048	12A2p6	cell line	sgMsh2	44335048	A	C	SNV	Mutect2;MuSe;Vardict	3	0.11	159	0	0	NA	exonic	H2ax	nonsynonymous SNV	H2ax:NM_010436:exon1:c.A287C:p.K96T	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.494484624	2	0.999802	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	44849286	12A2p6	cell line	sgMsh2	44849286	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	157	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.C1265T:p.T422I	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.710259733	1	0.9902829	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	45852929	12A2p6	cell line	sgMsh2	45852929	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	140	0	0	NA	exonic	Bace1	frameshift deletion	"Bace1:NM_001145947:exon2:c.303delG:p.A103Lfs*43,Bace1:NM_011792:exon2:c.303delG:p.A103Lfs*43"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.269718886	NA	NA	TGG	frameshift	G	5	GGGGG	-1
22-2_par	chr9	51850157	12A2p6	cell line	sgMsh2	51850157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	64	0	0	NA	exonic	Arhgap20	nonsynonymous SNV	Arhgap20:NM_175535:exon15:c.A3307G:p.T1103A	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9193071	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	53238121	12A2p6	cell line	sgMsh2	53238121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	106	0	0	NA	exonic	Ddx10	nonsynonymous SNV	Ddx10:NM_029936:exon3:c.T305C:p.L102S	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.539437772	2	0.9910022	CAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	53479717	12A2p6	cell line	sgMsh2	53479717	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	244	0	0	NA	exonic	Atm	synonymous SNV	Atm:NM_007499:exon37:c.C5556T:p.I1852I	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.157336017	3	4.80E-08	GGA	synonymous	NA	NA	NA	NA
22-2_par	chr9	54598417	12A2p6	cell line	sgMsh2	54598417	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	149	0	0	NA	exonic	Idh3a	synonymous SNV	Idh3a:NM_029573:exon7:c.G636A:p.L212L	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.368615811	2	0.7977181	TGC	synonymous	A	5	AAAAA	NA
22-2_par	chr9	54956868	12A2p6	cell line	sgMsh2	54956868	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	120	0	0	NA	exonic	Psma4	nonsynonymous SNV	Psma4:NM_011966:exon8:c.G565T:p.A189S	9qB	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.440540847	2	0.986862	AGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	57135484	12A2p6	cell line	sgMsh2	57135484	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	63	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon6:c.C637T:p.H213Y	9qB	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.548428401	2	0.9371579	GCA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	60680689	12A2p6	cell line	sgMsh2	60680689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	38	0	0	NA	exonic	Lrrc49	synonymous SNV	"Lrrc49:NM_001146047:exon4:c.A189G:p.V63V,Lrrc49:NM_145616:exon4:c.A207G:p.V69V"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.678792529	1	0.5383854	TTA	synonymous	NA	NA	NA	NA
22-2_par	chr9	64897247	12A2p6	cell line	sgMsh2	64897247	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	175	0	0	NA	exonic	Dennd4a	synonymous SNV	Dennd4a:NM_001162917:exon24:c.G3867T:p.T1289T	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.6768811	CGT	synonymous	NA	NA	NA	NA
22-2_par	chr9	65045696	12A2p6	cell line	sgMsh2	65045696	A	G	SNV	Mutect2;Vardict	2	0.049	103	0	0	NA	exonic	Dpp8	nonsynonymous SNV	Dpp8:NM_028906:exon6:c.A653G:p.D218G	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9903538	GAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	65592174	12A2p6	cell line	sgMsh2	65592174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	105	0	0	NA	exonic	Pif1	nonsynonymous SNV	"Pif1:NM_172453:exon8:c.A1372G:p.T458A,Pif1:NM_001357526:exon9:c.A1372G:p.T458A,Pif1:NM_001357527:exon9:c.A1372G:p.T458A"	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.445036162	2	0.9814766	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	66386700	12A2p6	cell line	sgMsh2	66386700	T	C	SNV	Mutect2;Vardict	2	0.07	70	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon5:c.T1323C:p.N441N	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.314672034	3	0.6581548	ATA	synonymous	NA	NA	NA	NA
22-2_par	chr9	66400082	12A2p6	cell line	sgMsh2	66400082	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	150	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon16:c.T3057G:p.L1019L	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.503475254	2	0.9996994	TTC	synonymous	NA	NA	NA	NA
22-2_par	chr9	66544023	12A2p6	cell line	sgMsh2	66544023	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	127	0	0	NA	exonic	Usp3	synonymous SNV	"Usp3:NM_001302116:exon6:c.T456C:p.S152S,Usp3:NM_144937:exon6:c.T456C:p.S152S"	9qC	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.310176719	3	0.8236503	TAC	synonymous	NA	NA	NA	NA
22-2_par	chr9	70443648	12A2p6	cell line	sgMsh2	70443648	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	84	0	0	NA	exonic	Rnf111	nonsynonymous SNV	"Rnf111:NM_001374753:exon8:c.T2033C:p.V678A,Rnf111:NM_001357494:exon9:c.T2036C:p.V679A,Rnf111:NM_033604:exon9:c.T2036C:p.V679A"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.395587699	2	0.8434911	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	71483247	12A2p6	cell line	sgMsh2	71483247	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	98	0	0	NA	exonic	Polr2m	synonymous SNV	"Polr2m:NM_001164793:exon2:c.T360G:p.P120P,Polr2m:NM_178602:exon2:c.T672G:p.P224P"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.624848752	2	0.7084205	TAG	synonymous	NA	NA	NA	NA
22-2_par	chr9	71856375	12A2p6	cell line	sgMsh2	71856375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	96	0	0	NA	exonic	Tcf12	synonymous SNV	"Tcf12:NM_001253864:exon11:c.A1326G:p.K442K,Tcf12:NM_001253863:exon12:c.A1398G:p.K466K,Tcf12:NM_001253865:exon13:c.A1179G:p.K393K,Tcf12:NM_001253862:exon18:c.A1836G:p.K612K,Tcf12:NM_011544:exon19:c.A1908G:p.K636K"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.80856	GTT	synonymous	T	5	TTTTT	NA
22-2_par	chr9	75251507	12A2p6	cell line	sgMsh2	75251507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	57	0	0	NA	exonic	Myo5c	nonsynonymous SNV	Myo5c:NM_001081322:exon7:c.A817G:p.K273E	9qD	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.84961449	1	0.9907188	TAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	76167083	12A2p6	cell line	sgMsh2	76167083	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	182	0	0	NA	exonic	Gfral	nonsynonymous SNV	Gfral:NM_205844:exon8:c.T1079C:p.V360A	9qD	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.38659707	2	0.9450066	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	78337605	12A2p6	cell line	sgMsh2	78337605	C	T	SNV	Mutect2;Vardict	2	0.049	165	0	0	NA	exonic	Gsta2	nonsynonymous SNV	Gsta2:NM_008182:exon4:c.G226A:p.A76T	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.220270423	3	0.9994606	GCG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	79818198	12A2p6	cell line	sgMsh2	79818198	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	195	0	0	NA	exonic	Filip1	synonymous SNV	"Filip1:NM_001357354:exon2:c.T2394G:p.V798V,Filip1:NM_001081243:exon5:c.T3138G:p.V1046V,Filip1:NM_001357352:exon5:c.T3183G:p.V1061V,Filip1:NM_001357353:exon5:c.T3138G:p.V1046V"	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.9376979	GAA	synonymous	NA	NA	NA	NA
22-2_par	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Strelka2;Vardict	2	0.3519	54	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
22-2_par	chr9	85719913	12A2p6	cell line	sgMsh2	85719913	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	80	0	0	NA	exonic	Ibtk	synonymous SNV	"Ibtk:NM_175371:exon12:c.T564C:p.N188N,Ibtk:NM_001081282:exon13:c.T2244C:p.N748N"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.449531476	2	0.9599547	CAT	synonymous	NA	NA	NA	NA
22-2_par	chr9	85728746	12A2p6	cell line	sgMsh2	85728746	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	116	0	0	NA	exonic	Ibtk	synonymous SNV	Ibtk:NM_001081282:exon7:c.G873A:p.A291A	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	1	2.56E-08	CCG	synonymous	NA	NA	NA	NA
22-2_par	chr9	86679867	12A2p6	cell line	sgMsh2	86679867	A	G	SNV	Mutect2;Vardict	2	0.111	42	0	0	NA	exonic	Me1	nonsynonymous SNV	"Me1:NM_001198933:exon2:c.T104C:p.V35A,Me1:NM_008615:exon2:c.T164C:p.V55A"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.498979939	2	0.8839671	GAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	88370247	12A2p6	cell line	sgMsh2	88370247	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	132	0	0	NA	exonic	Nt5e	nonsynonymous SNV	Nt5e:NM_011851:exon9:c.G1661T:p.S554I	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	0.5353177	AGT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	88568718	12A2p6	cell line	sgMsh2	88568718	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	57	0	0	NA	exonic	Zfp949	frameshift deletion	"Zfp949:NM_001163061:exon5:c.340delC:p.R114Vfs*11,Zfp949:NM_001142943:exon6:c.340delC:p.R114Vfs*11"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	1	NA	NA	ACG	frameshift	AGCA	8	AGCAAGCA	-1
22-2_par	chr9	90171586	12A2p6	cell line	sgMsh2	90171586	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	53	0	0	NA	exonic	Adamts7	synonymous SNV	"Adamts7:NM_001003911:exon2:c.T183C:p.D61D,Adamts7:NM_001311115:exon2:c.T183C:p.D61D,Adamts7:NM_001326351:exon2:c.T183C:p.D61D"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.476503365	2	0.9230412	ATG	synonymous	NA	NA	NA	NA
22-2_par	chr9	95988930	12A2p6	cell line	sgMsh2	95988930	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	86	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon16:c.T1807C:p.Y603H,Xrn1:NM_011916:exon16:c.T1807C:p.Y603H"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.5682184	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	96553141	12A2p6	cell line	sgMsh2	96553141	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	185	0	0	NA	exonic	Rasa2	nonsynonymous SNV	Rasa2:NM_053268:exon18:c.A1795G:p.T599A	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.224765738	3	0.9997117	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	98903814	12A2p6	cell line	sgMsh2	98903814	A	G	SNV	Mutect2;Vardict	2	0.085	54	0	0	NA	exonic	7420426K07Rik	synonymous SNV	7420426K07Rik:NM_001033983:exon1:c.A531G:p.P177P	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.7053251	CAT	synonymous	NA	NA	NA	NA
22-2_par	chr9	104082802	12A2p6	cell line	sgMsh2	104082802	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	99	0	0	NA	exonic	Acad11	synonymous SNV	Acad11:NM_175324:exon8:c.T972C:p.R324R	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.364120496	2	0.6912872	GTA	synonymous	NA	NA	NA	NA
22-2_par	chr9	105073846	12A2p6	cell line	sgMsh2	105073846	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	120	0	0	NA	exonic	Mrpl3	synonymous SNV	"Mrpl3:NM_001364512:exon8:c.A495C:p.G165G,Mrpl3:NM_001364513:exon8:c.A810C:p.G270G,Mrpl3:NM_053159:exon8:c.A810C:p.G270G"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.359625181	2	0.6772628	GAC	synonymous	NA	NA	NA	NA
22-2_par	chr9	105144865	12A2p6	cell line	sgMsh2	105144865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	36	0	0	NA	exonic	Nudt16l2	nonsynonymous SNV	Nudt16l2:NM_028562:exon1:c.C64A:p.L22I	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.750717566	1	0.000897448	AGA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	106013777	12A2p6	cell line	sgMsh2	106013777	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	245	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon33:c.T5317A:p.F1773I	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.332653293	3	0.7512165	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	106225985	12A2p6	cell line	sgMsh2	106225985	T	A	SNV	Mutect2;Vardict	2	0.061	79	0	0	NA	exonic	Tlr9	stopgain	Tlr9:NM_031178:exon2:c.T2474A:p.L825X	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.274214201	3	0.874385	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	107426076	12A2p6	cell line	sgMsh2	107426076	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	92	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174047:exon2:c.T239A:p.L80Q,Cacna2d2:NM_001174048:exon2:c.T239A:p.L80Q,Cacna2d2:NM_001174049:exon2:c.T239A:p.L80Q,Cacna2d2:NM_001174050:exon2:c.T239A:p.L80Q,Cacna2d2:NM_020263:exon2:c.T239A:p.L80Q"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.9647857	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	107908366	12A2p6	cell line	sgMsh2	107908366	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	68	0	0	NA	exonic	Mst1r	nonsynonymous SNV	Mst1r:NM_009074:exon1:c.T1222C:p.F408L	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.346139237	2	7.82E-05	TTT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr9	107979807	12A2p6	cell line	sgMsh2	107979807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	201	0	0	NA	exonic	Uba7	synonymous SNV	Uba7:NM_023738:exon17:c.T2058C:p.C686C	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.948511415	1	1.00E-09	GTC	synonymous	NA	NA	NA	NA
22-2_par	chr9	108339837	12A2p6	cell line	sgMsh2	108339837	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	83	0	0	NA	exonic	Gpx1	nonsynonymous SNV	Gpx1:NM_001329528:exon3:c.T139C:p.F47L	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.935025471	1	0.9999581	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	108499914	12A2p6	cell line	sgMsh2	108499914	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	78	0	0	NA	exonic	Usp19	nonsynonymous SNV	"Usp19:NM_145407:exon24:c.T3508C:p.Y1170H,Usp19:NM_001168371:exon25:c.T3583C:p.Y1195H,Usp19:NM_001168372:exon25:c.T3580C:p.Y1194H,Usp19:NM_001168373:exon25:c.T3577C:p.Y1193H,Usp19:NM_027804:exon25:c.T3580C:p.Y1194H"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.287700145	3	0.8213713	GTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	109221794	12A2p6	cell line	sgMsh2	109221794	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	0	0	NA	exonic	Fbxw20	nonsynonymous SNV	Fbxw20:NM_001008428:exon8:c.A1045G:p.M349V	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.863100435	1	0.9999976	ATC	nonsynonymous	CCAT	8	CCATCCAT	NA
22-2_par	chr9	109688745	12A2p6	cell line	sgMsh2	109688745	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	129	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon8:c.T1172C:p.L391P	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.328157978	3	0.6710682	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	110446858	12A2p6	cell line	sgMsh2	110446858	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	43	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon4:c.A416C:p.N139T,Klhl18:NM_177771:exon4:c.A416C:p.N139T"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.422559588	2	0.009580561	ATT	nonsynonymous	T	5	TTTTT	NA
22-2_par	chr9	110573794	12A2p6	cell line	sgMsh2	110573794	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	83	0	0	NA	exonic	Setd2	synonymous SNV	Setd2:NM_001081340:exon12:c.T5502C:p.P1834P	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.561914346	2	0.954105	CTT	synonymous	NA	NA	NA	NA
22-2_par	chr9	110799334	12A2p6	cell line	sgMsh2	110799334	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	166	0	0	NA	exonic	Prss42	nonsynonymous SNV	Prss42:NM_153099:exon3:c.A545G:p.Y182C	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.166326646	3	0.999981	TAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	116678647	12A2p6	cell line	sgMsh2	116678647	T	C	SNV	Mutect2;Vardict	2	0.051	93	0	0	NA	exonic	Rbms3	synonymous SNV	"Rbms3:NM_001172122:exon10:c.A924G:p.T308T,Rbms3:NM_001172123:exon10:c.A924G:p.T308T,Rbms3:NM_001172124:exon10:c.A924G:p.T308T,Rbms3:NM_001172126:exon10:c.A924G:p.T308T"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.229261053	3	0.9792977	CTG	synonymous	GTTG	8	GTTGGTTG	NA
22-2_par	chr9	118115345	12A2p6	cell line	sgMsh2	118115345	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	314	0	0	NA	exonic	Cmc1	nonsynonymous SNV	Cmc1:NM_026442:exon2:c.T104G:p.V35G	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.382101755	2	0.9860681	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	118769111	12A2p6	cell line	sgMsh2	118769111	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	204	0	0	NA	exonic	Itga9	nonsynonymous SNV	Itga9:NM_133721:exon16:c.T1712A:p.I571N	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.507970568	2	0.9999833	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	119552016	12A2p6	cell line	sgMsh2	119552016	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	202	0	0	NA	exonic	Scn5a	nonsynonymous SNV	"Scn5a:NM_001253860:exon3:c.A452G:p.H151R,Scn5a:NM_021544:exon4:c.A452G:p.H151R"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.301186089	3	0.9617362	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	119623030	12A2p6	cell line	sgMsh2	119623030	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	111	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon23:c.G3826C:p.V1276L,Scn10a:NM_009134:exon23:c.G3823C:p.V1275L"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.597876864	2	0.8999519	ACC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	119819790	12A2p6	cell line	sgMsh2	119819790	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	98	0	0	NA	exonic	Scn11a	nonsynonymous SNV	Scn11a:NM_011887:exon2:c.T206C:p.V69A	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.28320483	3	0.8932217	AAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	120094267	12A2p6	cell line	sgMsh2	120094267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	71	0	0	NA	exonic	Ccr8	synonymous SNV	Ccr8:NM_007720:exon2:c.A447G:p.T149T	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.620353438	2	0.7192101	CAG	synonymous	NA	NA	NA	NA
22-2_par	chr9	121074009	12A2p6	cell line	sgMsh2	121074009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	62	0	0	NA	exonic	Ulk4	nonsynonymous SNV	Ulk4:NM_177589:exon34:c.A3401G:p.K1134R	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.800166028	1	0.9787841	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chr9	121748185	12A2p6	cell line	sgMsh2	121748185	A	-	Deletion	Strelka2;Vardict	2	0.3684	19	0	0	NA	exonic	Nktr	frameshift deletion	Nktr:NM_010918:exon13:c.1318delA:p.A443Lfs*17	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	2	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
22-2_par	chr9	121909499	12A2p6	cell line	sgMsh2	121909499	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	36	0	0	NA	exonic	Ackr2	nonsynonymous SNV	"Ackr2:NM_021609:exon3:c.C939A:p.F313L,Ackr2:NM_001276719:exon4:c.C939A:p.F313L"	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.045783288	POOR GOF (76.7%)	1	0.485493995	2	0.838733	TCT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	7373583	12A2p6	cell line	sgMsh2	7373583	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	73	0	0	NA	exonic	Usp27x	nonsynonymous SNV	Usp27x:NM_019461:exon1:c.C1279T:p.P427S	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	8155747	12A2p6	cell line	sgMsh2	8155747	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	51	0	0	NA	exonic	Tbc1d25	nonsynonymous SNV	"Tbc1d25:NM_172478:exon6:c.T1025G:p.L342R,Tbc1d25:NM_001166437:exon7:c.T1130G:p.L377R"	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	8524317	12A2p6	cell line	sgMsh2	8524317	T	C	SNV	Mutect2;Vardict	2	0.038	383	0	0	NA	exonic	Gm14459	nonsynonymous SNV	Gm14459:NM_001126491:exon2:c.A184G:p.R62G	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	9960059	12A2p6	cell line	sgMsh2	9960059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	54	0	0	NA	exonic	Sytl5	nonsynonymous SNV	"Sytl5:NM_001290728:exon10:c.T1204C:p.Y402H,Sytl5:NM_177704:exon11:c.T1270C:p.Y424H"	XqA1.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	17226566	12A2p6	cell line	sgMsh2	17226566	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.098	71	0	0	NA	exonic	Efhc2	synonymous SNV	Efhc2:NM_028916:exon6:c.T630C:p.F210F	XqA1.2	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
22-2_par	chrX	20927583	12A2p6	cell line	sgMsh2	20927583	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.5	15	0	0	NA	exonic	Cfp	frameshift insertion	Cfp:NM_008823:exon7:c.1068dupT:p.G357Wfs*10	XqA1.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CCA	frameshift	NA	NA	NA	1
22-2_par	chrX	42536383	12A2p6	cell line	sgMsh2	42536383	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	81	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon31:c.A6559T:p.N2187Y	XqA4	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	44367021	12A2p6	cell line	sgMsh2	44367021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	35	0	0	NA	exonic	Dcaf12l2	synonymous SNV	Dcaf12l2:NM_175539:exon1:c.T990C:p.G330G	XqA4	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
22-2_par	chrX	46330060	12A2p6	cell line	sgMsh2	46330060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	75	0	0	NA	exonic	Actrt1	synonymous SNV	Actrt1:NM_028514:exon1:c.A951G:p.E317E	XqA4	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
22-2_par	chrX	52940298	12A2p6	cell line	sgMsh2	52940298	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.18	25	0	0	NA	exonic	Phf6	nonsynonymous SNV	"Phf6:NM_001290546:exon4:c.A252T:p.K84N,Phf6:NM_027642:exon6:c.A492T:p.K164N"	XqA5	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	56501763	12A2p6	cell line	sgMsh2	56501763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	94	0	0	NA	exonic	Ints6l	nonsynonymous SNV	Ints6l:NM_172779:exon14:c.A1876G:p.S626G	XqA6	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	56916370	12A2p6	cell line	sgMsh2	56916370	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.147	30	0	0	NA	exonic	Adgrg4	synonymous SNV	Adgrg4:NM_001362885:exon2:c.T3769C:p.L1257L	XqA6	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TTT	synonymous	NA	NA	NA	NA
22-2_par	chrX	56918257	12A2p6	cell line	sgMsh2	56918257	T	C	SNV	Mutect2;Vardict	2	0.104	59	0	0	NA	exonic	Adgrg4	nonsynonymous SNV	Adgrg4:NM_001362885:exon2:c.T5656C:p.F1886L	XqA6	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	67921344	12A2p6	cell line	sgMsh2	67921344	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.099	47	0	0	NA	exonic	4933436I01Rik	synonymous SNV	4933436I01Rik:NM_025763:exon1:c.C69T:p.N23N	XqA7.1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TGT	synonymous	NA	NA	NA	NA
22-2_par	chrX	73221927	12A2p6	cell line	sgMsh2	73221927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	36	0	0	NA	exonic	Xlr4b	nonsynonymous SNV	"Xlr4b:NM_001293676:exon8:c.A544G:p.M182V,Xlr4b:NM_001293677:exon8:c.A544G:p.M182V,Xlr4b:NM_001293678:exon8:c.A544G:p.M182V,Xlr4b:NM_001293679:exon8:c.A544G:p.M182V,Xlr4b:NM_001293680:exon8:c.A544G:p.M182V,Xlr4b:NM_021365:exon8:c.A544G:p.M182V"	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	73930049	12A2p6	cell line	sgMsh2	73930049	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	58	0	0	NA	exonic	Renbp	nonsynonymous SNV	"Renbp:NM_001164704:exon4:c.T206G:p.F69C,Renbp:NM_023132:exon4:c.T248G:p.F83C"	XqA7.3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	81426054	12A2p6	cell line	sgMsh2	81426054	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	87	0	0	NA	exonic	4930595M18Rik	nonsynonymous SNV	4930595M18Rik:NM_173435:exon2:c.A656G:p.N219S	XqB	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	83487587	12A2p6	cell line	sgMsh2	83487587	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	69	0	0	NA	exonic	Tsga8	nonsynonymous SNV	Tsga8:NM_021898:exon1:c.A92G:p.H31R	XqC1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GTG	nonsynonymous	GAG	8	GAGGAGGA	NA
22-2_par	chrX	91932125	12A2p6	cell line	sgMsh2	91932125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	48	0	0	NA	exonic	Gm5071	nonsynonymous SNV	Gm5071:NM_001256004:exon1:c.A856G:p.R286G	XqC2	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	95940858	12A2p6	cell line	sgMsh2	95940858	A	C	SNV	Mutect2;Vardict	2	0.073	50	0	0	NA	exonic	Las1l	nonsynonymous SNV	"Las1l:NM_152822:exon11:c.T1440G:p.N480K,Las1l:NM_001374717:exon12:c.T1491G:p.N497K"	XqC3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	100815264	12A2p6	cell line	sgMsh2	100815264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	121	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177780:exon11:c.T959C:p.M320T,Dlg3:NM_001177779:exon13:c.T1397C:p.M466T,Dlg3:NM_001290402:exon18:c.T2312C:p.M771T,Dlg3:NM_001177778:exon19:c.T2366C:p.M789T,Dlg3:NM_016747:exon20:c.T2408C:p.M803T"	XqC3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	101318025	12A2p6	cell line	sgMsh2	101318025	A	T	SNV	Mutect2;Vardict	2	0.141	24	0	0	NA	exonic	Nlgn3	nonsynonymous SNV	Nlgn3:NM_172932:exon6:c.A941T:p.K314I	XqD	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	102636586	12A2p6	cell line	sgMsh2	102636586	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	80	0	0	NA	exonic	Phka1	frameshift deletion	"Phka1:NM_008832:exon4:c.411delT:p.T138Lfs*7,Phka1:NM_173021:exon4:c.411delT:p.T138Lfs*7"	XqD	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TAG	frameshift	NA	NA	NA	-1
22-2_par	chrX	103962609	12A2p6	cell line	sgMsh2	103962609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	169	0	0	NA	exonic	Rlim	nonsynonymous SNV	"Rlim:NM_001358205:exon5:c.T1685C:p.L562P,Rlim:NM_011276:exon5:c.T1685C:p.L562P"	XqD	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	127063134	12A2p6	cell line	sgMsh2	127063134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	29	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.C2941T:p.R981C	XqE3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	133686521	12A2p6	cell line	sgMsh2	133686521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	130	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105245:exon1:c.T744C:p.P248P,Pcdh19:NM_001105246:exon1:c.T744C:p.P248P"	XqE3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
22-2_par	chrX	133897297	12A2p6	cell line	sgMsh2	133897297	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	33	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.C103A:p.L35I	XqE3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	134693549	12A2p6	cell line	sgMsh2	134693549	T	C	SNV	Mutect2;Vardict	2	0.13	25	0	0	NA	exonic	Armcx4	nonsynonymous SNV	Armcx4:NM_001202500:exon6:c.T4205C:p.M1402T	XqE3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	134806733	12A2p6	cell line	sgMsh2	134806733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	10	0	0	NA	exonic	Armcx2	synonymous SNV	"Armcx2:NM_026139:exon5:c.A150G:p.G50G,Armcx2:NM_001166397:exon6:c.A150G:p.G50G,Armcx2:NM_001166398:exon6:c.A150G:p.G50G"	XqE3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	TTC	synonymous	NA	NA	NA	NA
22-2_par	chrX	138967743	12A2p6	cell line	sgMsh2	138967743	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	99	0	0	NA	exonic	Nrk	nonsynonymous SNV	Nrk:NM_013724:exon8:c.T656A:p.M219K	XqF1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	140761284	12A2p6	cell line	sgMsh2	140761284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	84	0	0	NA	exonic	Mid2	nonsynonymous SNV	"Mid2:NM_001358366:exon8:c.T1445C:p.I482T,Mid2:NM_001358367:exon8:c.T1535C:p.I512T,Mid2:NM_011845:exon8:c.T1385C:p.I462T"	XqF1	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	142338979	12A2p6	cell line	sgMsh2	142338979	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	77	0	0	NA	exonic	Acsl4	nonsynonymous SNV	"Acsl4:NM_001033600:exon11:c.C1220A:p.P407H,Acsl4:NM_019477:exon11:c.C1220A:p.P407H,Acsl4:NM_207625:exon11:c.C1343A:p.P448H"	XqF2	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	147075828	12A2p6	cell line	sgMsh2	147075828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	81	0	0	NA	exonic	Htr2c	nonsynonymous SNV	Htr2c:NM_008312:exon4:c.C133T:p.R45C	XqF2	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	151904398	12A2p6	cell line	sgMsh2	151904398	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	56	0	0	NA	exonic	Huwe1	nonsynonymous SNV	Huwe1:NM_021523:exon50:c.A6928G:p.T2310A	XqF3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	153384636	12A2p6	cell line	sgMsh2	153384636	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	93	0	0	NA	exonic	Klf8	nonsynonymous SNV	"Klf8:NM_173780:exon5:c.A676C:p.S226R,Klf8:NM_001357183:exon6:c.A676C:p.S226R"	XqF3	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	AAG	nonsynonymous	AGTGAT	12	AGTGATAGTGAT	NA
22-2_par	chrX	164271667	12A2p6	cell line	sgMsh2	164271667	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	44	0	0	NA	exonic	Pir	nonsynonymous SNV	Pir:NM_027153:exon2:c.T32C:p.V11A	XqF5	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
22-2_par	chrX	164438197	12A2p6	cell line	sgMsh2	164438197	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	87	0	0	NA	exonic	Asb11	synonymous SNV	Asb11:NM_026853:exon2:c.T72C:p.Y24Y	XqF5	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
22-2_par	chrX	167243898	12A2p6	cell line	sgMsh2	167243898	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	156	0	0	NA	exonic	Tlr8	nonsynonymous SNV	"Tlr8:NM_001313760:exon2:c.A1946T:p.N649I,Tlr8:NM_001313761:exon3:c.A398T:p.N133I,Tlr8:NM_133212:exon3:c.A1955T:p.N652I"	XqF5	NA	NA	NA	NA	0.9	4.045783288	POOR GOF (76.7%)	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr1	111860341	DC1246tail	autochthonous	sgTom	111860341	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	243	0	0	NA	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.C2463A:p.P821P	1qE2.1	chr1-3216742-193325342	4	3	1	0.749	3.775323389	POOR GOF (77%)	1	0.267145714	3	0.9999999	TGG	synonymous	NA	NA	NA	NA
DC1246T1	chr1	132621089	DC1246tail	autochthonous	sgTom	132621089	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	185	0	0	NA	exonic	Nfasc	stopgain	"Nfasc:NM_001160316:exon8:c.G872A:p.W291X,Nfasc:NM_001160318:exon9:c.G821A:p.W274X,Nfasc:NM_001160317:exon10:c.G872A:p.W291X,Nfasc:NM_182716:exon10:c.G839A:p.W280X"	1qE4	chr1-3216742-193325342	4	3	1	0.749	3.775323389	POOR GOF (77%)	1	0.982894607	1	0.9999987	CCA	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr1	172369340	DC1246tail	autochthonous	sgTom	172369340	C	T	SNV	Mutect2;Vardict	2	0.053	76	0	0	NA	exonic	Kcnj10	synonymous SNV	Kcnj10:NM_001039484:exon2:c.C420T:p.C140C	1qH3	chr1-3216742-193325342	4	3	1	0.749	3.775323389	POOR GOF (77%)	1	0.267145714	3	0.9971434	GCC	synonymous	NA	NA	NA	NA
DC1246T1	chr10	127719328	DC1246tail	autochthonous	sgTom	127719328	T	C	SNV	Mutect2;Vardict	2	0.042	103	0	0	NA	exonic	Myo1a	synonymous SNV	Myo1a:NM_001081219:exon23:c.T2562C:p.F854F	10qD3	chr10-5218416-130389076	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.211700377	3	0.9999955	TTA	synonymous	NA	NA	NA	NA
DC1246T1	chr11	97267611	DC1246tail	autochthonous	sgTom	97267611	G	T	SNV	Mutect2;Vardict	2	0.033	170	0	0	NA	exonic	Npepps	synonymous SNV	Npepps:NM_008942:exon2:c.C327A:p.A109A	11qD	chr11-69590981-121580267	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.16633601	3	1.00E-09	GGG	synonymous	NA	NA	NA	NA
DC1246T1	chr11	120382526	DC1246tail	autochthonous	sgTom	120382526	G	C	SNV	Mutect2;Vardict	2	0.124	23	0	0	NA	exonic	Nploc4	synonymous SNV	"Nploc4:NM_199469:exon16:c.C1674G:p.T558T,Nploc4:NM_001195023:exon17:c.C1770G:p.T590T"	11qE2	chr11-69590981-121580267	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.625020161	2	0.864612	AGG	synonymous	NA	NA	NA	NA
DC1246T1	chr12	69373267	DC1246tail	autochthonous	sgTom	69373267	C	A	SNV	Mutect2;Vardict	2	0.043	94	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.C474A:p.S158S	12qC2	chr12-4134424-118301289	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.216740862	3	0.999982	CCG	synonymous	NA	NA	NA	NA
DC1246T1	chr13	54740011	DC1246tail	autochthonous	sgTom	54740011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	112	0	0	NA	exonic	Gprin1	nonsynonymous SNV	"Gprin1:NM_001316710:exon2:c.C449T:p.T150M,Gprin1:NM_012014:exon3:c.C449T:p.T150M"	13qB1	chr13-3554284-119495179	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	1	1	0.9998541	CGT	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr13	69738765	DC1246tail	autochthonous	sgTom	69738765	T	G	SNV	Mutect2;Vardict	2	0.044	123	0	0	NA	exonic	Ube2ql1	synonymous SNV	Ube2ql1:NM_001145162:exon1:c.A576C:p.T192T	13qC1	chr13-3554284-119495179	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.221781347	3	0.9999986	CTG	synonymous	NA	NA	NA	NA
DC1246T1	chr14	61191455	DC1246tail	autochthonous	sgTom	61191455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	122	0	0	NA	exonic	Sacs	nonsynonymous SNV	"Sacs:NM_015788:exon8:c.G962A:p.R321Q,Sacs:NM_172809:exon8:c.G962A:p.R321Q"	14qD1	chr14-7006943-123348696	4	2	2	0.749	3.775323389	POOR GOF (77%)	1	0.675425012	2	0.9981096	CGA	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr17	13236241	DC1246tail	autochthonous	sgTom	13236241	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.018	997	0	0	NA	exonic	Smok2b	synonymous SNV	Smok2b:NM_001167913:exon2:c.C1287A:p.G429G	17qA1	chr17-3077483-90208269	5	3	2	0.749	3.775323389	POOR GOF (77%)	1	0.090728733	3	1	GCC	synonymous	NA	NA	NA	NA
DC1246T1	chr18	37423815	DC1246tail	autochthonous	sgTom	37423815	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	265	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.T2197C:p.F733L	18qB3	chr18-10104325-89073490	5	3	2	0.749	3.775323389	POOR GOF (77%)	1	0.126012129	3	1	CTT	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr18	56748019	DC1246tail	autochthonous	sgTom	56748019	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	193	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon9:c.G1537T:p.D513Y	18qD3	chr18-10104325-89073490	5	3	2	0.749	3.775323389	POOR GOF (77%)	1	0.61493919	2	0.9999994	TGA	nonsynonymous	NA	NA	NA	NA
DC1246T1	chr4	40263010	DC1246tail	autochthonous	sgTom	40263010	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.026	170	0	0	NA	exonic	Topors	synonymous SNV	Topors:NM_134097:exon3:c.G273A:p.Q91Q	4qA5	chr4-6393150-154889696	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.131052614	3	1.00E-09	GCT	synonymous	NA	NA	NA	NA
DC1246T1	chr5	4757044	DC1246tail	autochthonous	sgTom	4757044	T	C	SNV	Mutect2;Vardict	2	0.04	100	0	0	NA	exonic	Fzd1	synonymous SNV	Fzd1:NM_021457:exon1:c.A537G:p.L179L	5qA1	chr5-3582301-150478141	4	2	2	0.749	3.775323389	POOR GOF (77%)	1	0.201619407	3	0.9999973	GTA	synonymous	NA	NA	NA	NA
DC1246T1	chr7	78304388	DC1246tail	autochthonous	sgTom	78304388	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	158	0	0	NA	exonic	Ntrk3	synonymous SNV	Ntrk3:NM_182809:exon13:c.T1624C:p.L542L	7qD2	chr7-4554068-145323643	4	2	2	0.749	3.775323389	POOR GOF (77%)	1	0.216740862	3	2.17E-08	AAG	synonymous	NA	NA	NA	NA
DC1246T1	chr9	40455422	DC1246tail	autochthonous	sgTom	40455422	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	82	0	0	NA	exonic	Gramd1b	synonymous SNV	Gramd1b:NM_172768:exon1:c.T249C:p.I83I	9qA5.1	chr9-7282188-123664738	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.262105229	3	0.9986162	TAA	synonymous	NA	NA	NA	NA
DC1246T1	chr9	53247944	DC1246tail	autochthonous	sgTom	53247944	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	52	0	0	NA	exonic	Ddx10	synonymous SNV	Ddx10:NM_029936:exon1:c.T60C:p.F20F	9qA5.3	chr9-7282188-123664738	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.529250942	2	0.9964006	TAA	synonymous	NA	NA	NA	NA
DC1246T1	chr9	106884505	DC1246tail	autochthonous	sgTom	106884505	T	C	SNV	Mutect2;Vardict	2	0.095	43	0	0	NA	exonic	Rbm15b	synonymous SNV	Rbm15b:NM_175402:exon1:c.A2463G:p.L821L	9qF1	chr9-7282188-123664738	3	2	1	0.749	3.775323389	POOR GOF (77%)	1	0.478846091	2	0.9749024	CTA	synonymous	NA	NA	NA	NA
DC1246T1	chrX	20851942	DC1246tail	autochthonous	sgTom	20851943	CA	TG	DBS	Mutect2;Vardict	2	0.039	85	0	0	NA	exonic	Araf	nonframeshift substitution	"Araf:NM_001159645:exon6:c.471_472TG:p.I158V,Araf:NM_009703:exon6:c.471_472TG:p.I158V"	XqA1.3	NA	NA	NA	NA	0.749	3.775323389	POOR GOF (77%)	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
DC1246T1	chrX	67920684	DC1246tail	autochthonous	sgTom	67920684	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	276	0	0	NA	exonic	4933436I01Rik	nonsynonymous SNV	4933436I01Rik:NM_025763:exon2:c.C568A:p.Q190K	XqA7.1	NA	NA	NA	NA	0.749	3.775323389	POOR GOF (77%)	NA	NA	NA	NA	TGA	nonsynonymous	NA	NA	NA	NA
DC1246T1	chrX	73676875	DC1246tail	autochthonous	sgTom	73676875	G	A	SNV	Mutect2;Vardict	2	0.062	64	0	0	NA	exonic	Slc6a8	nonsynonymous SNV	"Slc6a8:NM_001142809:exon3:c.G620A:p.R207Q,Slc6a8:NM_001142810:exon3:c.G620A:p.R207Q,Slc6a8:NM_133987:exon3:c.G620A:p.R207Q"	XqA7.3	NA	NA	NA	NA	0.749	3.775323389	POOR GOF (77%)	NA	NA	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr1	174837099	DC1246tail	autochthonous	sgTom	174837099	T	C	SNV	Mutect2;Vardict	2	0.089	46	0	0	NA	exonic	Grem2	synonymous SNV	Grem2:NM_011825:exon2:c.A183G:p.V61V	1qH3	chr1-3216742-192130246	4	2	2	0.814	5.055147632	RARE KARYOTYPE	1	0.552712702	2	0.9902728	CTA	synonymous	NA	NA	NA	NA
DC1246T2	chr10	58454596	DC1246tail	autochthonous	sgTom	58454596	G	A	SNV	Mutect2;Vardict	2	0.061	76	0	0	NA	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon4:c.G276A:p.T92T	10qB4	chr10-14523042-130453386	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.37882556	2	0.9710936	CGC	synonymous	A	5	AAAAA	NA
DC1246T2	chr11	73787275	DC1246tail	autochthonous	sgTom	73787275	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	317	0	0	NA	exonic	Olfr390	synonymous SNV	Olfr390:NM_146347:exon1:c.C336T:p.N112N	11qB4	chr11-69600961-120783193	4	2	2	0.814	5.055147632	RARE KARYOTYPE	2	1	1	1	ACT	synonymous	NA	NA	NA	NA
DC1246T2	chr13	31559507	DC1246tail	autochthonous	sgTom	31559507	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	46	0	0	NA	exonic	Foxq1	synonymous SNV	Foxq1:NM_008239:exon1:c.A591G:p.E197E	13qA3.2	chr13-3554284-119495179	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.577553722	2	0.9839804	AAT	synonymous	NA	NA	NA	NA
DC1246T2	chr14	31225963	DC1246tail	autochthonous	sgTom	31225963	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	41	0	0	NA	exonic	Sema3g	nonsynonymous SNV	Sema3g:NM_001025379:exon14:c.G1554T:p.Q518H	14qB	chr14-7422346-121555257	4	2	2	0.814	5.055147632	RARE KARYOTYPE	2	1	1	0.999543	AGC	nonsynonymous	GCTGCA	12	GCTGCAGCTGCA	NA
DC1246T2	chr14	105893568	DC1246tail	autochthonous	sgTom	105893568	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	55	0	0	NA	exonic	Spry2	synonymous SNV	Spry2:NM_011897:exon2:c.G183C:p.V61V	14qE2.3	chr14-7422346-121555257	4	2	2	0.814	5.055147632	RARE KARYOTYPE	1	0.465769131	2	0.9914253	CCA	synonymous	NA	NA	NA	NA
DC1246T2	chr14	105893577	DC1246tail	autochthonous	sgTom	105893577	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	56	0	0	NA	exonic	Spry2	synonymous SNV	Spry2:NM_011897:exon2:c.C174G:p.G58G	14qE2.3	chr14-7422346-121555257	4	2	2	0.814	5.055147632	RARE KARYOTYPE	1	0.471979386	2	0.9928731	GGC	synonymous	NA	NA	NA	NA
DC1246T2	chr17	23360046	DC1246tail	autochthonous	sgTom	23360046	G	A	SNV	Mutect2;Vardict	2	0.038	573	0	0	NA	exonic	Vmn2r115	nonsynonymous SNV	Vmn2r115:NM_001104579:exon6:c.G2492A:p.C831Y	17qA3.3	chr17-3078964-90208269	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.235989693	3	0.9999993	TGT	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr17	46825344	DC1246tail	autochthonous	sgTom	46825344	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	217	0	0	NA	exonic	Bicral	synonymous SNV	Bicral:NM_001100452:exon4:c.C939T:p.I313I	17qC	chr17-3078964-90208269	6	4	2	0.814	5.055147632	RARE KARYOTYPE	2	1	1	1	GGA	synonymous	NA	NA	NA	NA
DC1246T2	chr18	37092449	DC1246tail	autochthonous	sgTom	37092449	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	202	0	0	NA	exonic	Pcdhac1	nonsynonymous SNV	Pcdhac1:NM_001003671:exon1:c.T2314G:p.L772V	18qB2	chr18-6208079-86499224	6	4	2	0.814	5.055147632	RARE KARYOTYPE	2	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr19	5672613	DC1246tail	autochthonous	sgTom	5672613	G	A	SNV	Mutect2;Vardict	2	0.058	74	0	0	NA	exonic	Pcnx3	synonymous SNV	Pcnx3:NM_144868:exon26:c.C4050T:p.R1350R	19qA	chr19-5141130-60850867	4	2	2	0.814	5.055147632	RARE KARYOTYPE	1	0.360194794	2	0.9498007	AGC	synonymous	AGCG	8	AGCGAGCG	NA
DC1246T2	chr2	25221325	DC1246tail	autochthonous	sgTom	25221325	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	185	0	0	NA	exonic	Fam166a	nonsynonymous SNV	Fam166a:NM_026624:exon5:c.C665T:p.A222V	2qA3	chr2-4925576-181511691	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.186307652	3	0.9991366	GCC	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr2	36091116	DC1246tail	autochthonous	sgTom	36091116	T	C	SNV	Mutect2;Vardict	2	0.054	82	0	0	NA	exonic	Lhx6	synonymous SNV	"Lhx6:NM_001083126:exon7:c.A813G:p.R271R,Lhx6:NM_001083127:exon7:c.A813G:p.R271R,Lhx6:NM_001083125:exon8:c.A900G:p.R300R,Lhx6:NM_001355125:exon8:c.A813G:p.R271R,Lhx6:NM_008500:exon8:c.A900G:p.R300R"	2qB	chr2-4925576-181511691	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.335353774	2	0.9110366	CTC	synonymous	NA	NA	NA	NA
DC1246T2	chr3	68870310	DC1246tail	autochthonous	sgTom	68870310	C	T	SNV	Mutect2;Vardict	2	0.083	51	0	0	NA	exonic	1110032F04Rik	synonymous SNV	1110032F04Rik:NM_001167996:exon1:c.C603T:p.Y201Y	3qE1	chr3-8936373-159911278	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.515451171	2	0.9946911	ACC	synonymous	NA	NA	NA	NA
DC1246T2	chr4	155803713	DC1246tail	autochthonous	sgTom	155803713	C	T	SNV	Mutect2;Vardict	2	0.105	38	0	0	NA	exonic	Mrpl20	nonsynonymous SNV	Mrpl20:NM_025570:exon2:c.C58T:p.R20W	4qE2	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr6	22999274	DC1246tail	autochthonous	sgTom	22999274	A	C	SNV	Mutect2;Vardict	2	0.066	63	0	0	NA	exonic	Ptprz1	synonymous SNV	"Ptprz1:NM_001081306:exon12:c.A1362C:p.I454I,Ptprz1:NM_001311064:exon12:c.A1362C:p.I454I,Ptprz1:NM_001361349:exon12:c.A1362C:p.I454I,Ptprz1:NM_011219:exon12:c.A1362C:p.I454I"	6qA3.1	chr6-4754265-121889230	6	4	2	0.814	5.055147632	RARE KARYOTYPE	1	0.409876835	2	0.9803257	TAA	synonymous	NA	NA	NA	NA
DC1246T2	chr7	56155055	DC1246tail	autochthonous	sgTom	56155055	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	139	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon43:c.C6830T:p.T2277M,Herc2:NM_010418:exon43:c.C6830T:p.T2277M"	7qB5	chr7-4743149-145322663	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.329143519	2	0.929304	ACG	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr7	100882269	DC1246tail	autochthonous	sgTom	100882269	T	C	SNV	Mutect2;Strelka2	2	0.09	36	0	0	NA	exonic	Arhgef17	synonymous SNV	Arhgef17:NM_001081116:exon9:c.A4017G:p.K1339K	7qE2	chr7-4743149-145322663	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.558922957	2	0.9744556	ATT	synonymous	NA	NA	NA	NA
DC1246T2	chr7	141988308	DC1246tail	autochthonous	sgTom	141988308	T	C	SNV	Mutect2;Strelka2	2	0.054	60	0	0	NA	exonic	Brsk2	synonymous SNV	"Brsk2:NM_001009929:exon12:c.T1101C:p.D367D,Brsk2:NM_001009930:exon12:c.T1101C:p.D367D,Brsk2:NM_001276763:exon12:c.T1101C:p.D367D,Brsk2:NM_029426:exon12:c.T1101C:p.D367D"	7qF5	chr7-4743149-145322663	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.335353774	2	0.8912979	ATT	synonymous	NA	NA	NA	NA
DC1246T2	chr9	88456287	DC1246tail	autochthonous	sgTom	88456287	T	A	SNV	Mutect2;Vardict	2	0.052	97	0	0	NA	exonic	Syncrip	nonsynonymous SNV	Syncrip:NM_019666:exon11:c.A1723T:p.T575S	9qE3.1	chr9-3342997-123664738	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.322933264	2	0.8831487	GTA	nonsynonymous	NA	NA	NA	NA
DC1246T2	chr9	88588319	DC1246tail	autochthonous	sgTom	88588319	C	A	SNV	Mutect2;Vardict	2	0.028	201	0	0	NA	exonic	Trim43a	nonsynonymous SNV	"Trim43a:NM_001034906:exon7:c.C1177A:p.H393N,Trim43a:NM_001357687:exon7:c.C1180A:p.H394N"	9qE3.1	chr9-3342997-123664738	4	3	1	0.814	5.055147632	RARE KARYOTYPE	1	0.173887142	3	0.9998395	ACA	nonsynonymous	NA	NA	NA	NA
DC1246T2	chrX	85616534	DC1246tail	autochthonous	sgTom	85616534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	120	0	0	NA	exonic	Tab3	synonymous SNV	"Tab3:NM_025729:exon5:c.G1722A:p.T574T,Tab3:NM_001358447:exon6:c.G1722A:p.T574T"	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	NA	NA	CGG	synonymous	NA	NA	NA	NA
DC1246T2	chrX	89930694	DC1246tail	autochthonous	sgTom	89930694	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	77	0	0	NA	exonic	4930415L06Rik	frameshift deletion	4930415L06Rik:NM_001033880:exon2:c.1896delT:p.F632Lfs*15	XqC1	NA	NA	NA	NA	0.814	5.055147632	RARE KARYOTYPE	NA	NA	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1246T3	chr1	9546593	DC1246tail	autochthonous	sgTom	9546593	C	T	SNV	Mutect2;Vardict	2	0.077	68	0	0	NA	exonic	Rrs1	nonsynonymous SNV	Rrs1:NM_021511:exon1:c.C1070T:p.P357L	1qA2	chr1-3216742-195062457	3	2	1	0.755	2.869499055	NA	1	0.292650897	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr11	60436352	DC1246tail	autochthonous	sgTom	60436352	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	209	0	0	NA	exonic	Gid4	nonsynonymous SNV	Gid4:NM_025757:exon4:c.A362C:p.K121T	11qB2	chr11-3132249-69579350	2	1	1	0.755	2.869499055	NA	1	1	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr11	82434694	DC1246tail	autochthonous	sgTom	82434694	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	25	0	0	NA	exonic	Tmem132e	synonymous SNV	Tmem132e:NM_001304439:exon2:c.A519T:p.A173A	11qC	chr11-69590981-116672809	2	1	1	0.755	2.869499055	NA	1	0.87415203	NA	NA	CAC	synonymous	NA	NA	NA	NA
DC1246T3	chr13	23571658	DC1246tail	autochthonous	sgTom	23571658	G	A	SNV	Mutect2;Vardict	2	0.034	144	0	0	NA	exonic	H2bc8	nonsynonymous SNV	H2bc8:NM_178196:exon1:c.G226A:p.G76S	13qA3.1	chr13-3554284-119495179	3	2	1	0.755	2.869499055	NA	1	0.129222474	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr2	31284203	DC1246tail	autochthonous	sgTom	31284203	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	220	0	0	NA	exonic	Ncs1	nonsynonymous SNV	Ncs1:NM_019681:exon5:c.C364A:p.L122I	2qB	chr2-4925576-181511691	4	2	2	0.755	2.869499055	NA	2	1	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr2	76901666	DC1246tail	autochthonous	sgTom	76901666	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	175	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon49:c.C11580T:p.I3860I,Ttn:NM_001385708:exon51:c.C14601T:p.I4867I"	2qC3	chr2-4925576-181511691	4	2	2	0.755	2.869499055	NA	1	0.182431728	NA	NA	CGA	synonymous	NA	NA	NA	NA
DC1246T3	chr2	112008702	DC1246tail	autochthonous	sgTom	112008702	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	174	0	0	NA	exonic	Olfr1310	nonsynonymous SNV	Olfr1310:NM_146449:exon1:c.T483G:p.S161R	2qE3	chr2-4925576-181511691	4	2	2	0.755	2.869499055	NA	1	0.136823796	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr2	130636341	DC1246tail	autochthonous	sgTom	130636341	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	61	0	0	NA	exonic	Lzts3	nonsynonymous SNV	"Lzts3:NM_001291027:exon4:c.A836G:p.N279S,Lzts3:NM_001291028:exon4:c.A494G:p.N165S,Lzts3:NM_197945:exon4:c.A836G:p.N279S"	2qF1	chr2-4925576-181511691	4	2	2	0.755	2.869499055	NA	2	1	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr2	172992127	DC1246tail	autochthonous	sgTom	172992127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	256	0	0	NA	exonic	Spo11	synonymous SNV	"Spo11:NM_001083959:exon11:c.C966T:p.Y322Y,Spo11:NM_001083960:exon11:c.C927T:p.Y309Y,Spo11:NM_001305434:exon11:c.C915T:p.Y305Y,Spo11:NM_012046:exon12:c.C1041T:p.Y347Y"	2qH3	chr2-4925576-181511691	4	2	2	0.755	2.869499055	NA	1	0.353461473	NA	NA	ACA	synonymous	NA	NA	NA	NA
DC1246T3	chr5	90903987	DC1246tail	autochthonous	sgTom	90903989	CTG	-	Deletion	Strelka2;Vardict	2	0.1064	47	0	0	NA	exonic	Cxcl2	nonframeshift deletion	Cxcl2:NM_009140:exon1:c.43_45del:p.L19del	5qE1	chr5-3582301-149696570	3	2	1	0.755	2.869499055	NA	1	0.40439033	NA	NA	CCT	inframe	CTG	15	CTGCTGCTGCTGCTG	-3
DC1246T3	chr5	137310077	DC1246tail	autochthonous	sgTom	137310077	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	89	0	0	NA	exonic	Trip6	nonsynonymous SNV	Trip6:NM_011639:exon9:c.A1409C:p.Q470P	5qG2	chr5-3582301-149696570	3	2	1	0.755	2.869499055	NA	1	0.220438338	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
DC1246T3	chr6	87731217	DC1246tail	autochthonous	sgTom	87731217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	46	0	0	NA	exonic	Efcc1	nonsynonymous SNV	Efcc1:NM_001159697:exon1:c.G325A:p.D109N	6qD1	chr6-3494310-121889230	3	2	1	0.755	2.869499055	NA	1	0.706922946	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr1	52189466	DC1320tail	autochthonous	sgMsh2	52189466	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	144	188	20	0.106382979	exonic	Gls	nonsynonymous SNV	"Gls:NM_001081081:exon13:c.T1529C:p.L510P,Gls:NM_001113383:exon13:c.T1529C:p.L510P"	1qC1.1	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.255878322	3	0.7316636	AAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
DC1320T1	chr1	110137896	DC1320tail	autochthonous	sgMsh2	110137896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	66	0	0	NA	exonic	Cdh7	frameshift deletion	"Cdh7:NM_001316743:exon12:c.1899delA:p.E636Sfs*14,Cdh7:NM_172853:exon12:c.1899delA:p.E636Sfs*14,Cdh7:NM_001316744:exon13:c.1725delA:p.E578Sfs*14"	1qE2.1	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.493147312	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr1	131349496	DC1320tail	autochthonous	sgMsh2	131349496	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	220	11	0	0	exonic	Srgap2	frameshift deletion	Srgap2:NM_001081011:exon8:c.1012delT:p.C338Afs*3	1qE4	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.697849969	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr1	135470562	DC1320tail	autochthonous	sgMsh2	135470562	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	101	9	0	0	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon6:c.G2281T:p.G761C	1qE4	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.29774932	2	0.7936829	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr1	143699256	DC1320tail	autochthonous	sgMsh2	143699256	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	188	73	1	0.01369863	exonic	Cdc73	synonymous SNV	Cdc73:NM_145991:exon2:c.T198C:p.N66N	1qF	chr1-4839315-194950953	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.255878322	3	0.7806773	CAT	synonymous	NA	NA	NA	NA
DC1320T1	chr10	23993342	DC1320tail	autochthonous	sgMsh2	23993342	C	T	SNV	Mutect2;Vardict	2	0.026	498	0	0	NA	exonic	Taar7a	nonsynonymous SNV	Taar7a:NM_001010829:exon1:c.G140A:p.R47H	10qA4	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.120960661	3	1	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr10	59350574	DC1320tail	autochthonous	sgMsh2	59350574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	185	160	7	0.04375	exonic	P4ha1	nonsynonymous SNV	"P4ha1:NM_001316370:exon6:c.C634A:p.L212M,P4ha1:NM_001316371:exon7:c.C874A:p.L292M,P4ha1:NM_011030:exon7:c.C874A:p.L292M"	10qB4	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.530365977	2	0.9921147	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr10	106830642	DC1320tail	autochthonous	sgMsh2	106830642	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	147	0	0	NA	exonic	Ppfia2	nonsynonymous SNV	"Ppfia2:NM_001359677:exon8:c.C998A:p.A333D,Ppfia2:NM_001359678:exon8:c.C998A:p.A333D,Ppfia2:NM_001359679:exon8:c.C998A:p.A333D,Ppfia2:NM_001359680:exon8:c.C986A:p.A329D,Ppfia2:NM_001359681:exon8:c.C986A:p.A329D,Ppfia2:NM_001359682:exon8:c.C998A:p.A333D,Ppfia2:NM_001359683:exon8:c.C986A:p.A329D,Ppfia2:NM_001359684:exon8:c.C986A:p.A329D,Ppfia2:NM_001359685:exon8:c.C998A:p.A333D,Ppfia2:NM_001359686:exon8:c.C986A:p.A329D,Ppfia2:NM_001359687:exon8:c.C998A:p.A333D,Ppfia2:NM_001359688:exon8:c.C986A:p.A329D,Ppfia2:NM_001359689:exon8:c.C986A:p.A329D,Ppfia2:NM_001359690:exon8:c.C986A:p.A329D,Ppfia2:NM_001359691:exon8:c.C986A:p.A329D,Ppfia2:NM_001359692:exon8:c.C998A:p.A333D,Ppfia2:NM_001359693:exon8:c.C986A:p.A329D,Ppfia2:NM_001359694:exon8:c.C986A:p.A329D,Ppfia2:NM_001359695:exon8:c.C986A:p.A329D,Ppfia2:NM_001359696:exon8:c.C986A:p.A329D,Ppfia2:NM_001359697:exon8:c.C986A:p.A329D,Ppfia2:NM_001359698:exon8:c.C986A:p.A329D,Ppfia2:NM_001205341:exon10:c.C1208A:p.A403D,Ppfia2:NM_001359672:exon10:c.C1220A:p.A407D,Ppfia2:NM_001359673:exon10:c.C1208A:p.A403D,Ppfia2:NM_001359674:exon10:c.C1208A:p.A403D,Ppfia2:NM_001359675:exon10:c.C1208A:p.A403D,Ppfia2:NM_001359676:exon10:c.C1208A:p.A403D,Ppfia2:NM_177373:exon10:c.C1208A:p.A403D"	10qD1	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.274487655	2	0.5819082	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr10	126008664	DC1320tail	autochthonous	sgMsh2	126008664	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.076	189	0	0	NA	exonic	Lrig3	stopgain	Lrig3:NM_177152:exon14:c.1996delG:p.V666fs*0	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.353577318	NA	NA	CGT	nonsynonymous	NA	NA	NA	-1
DC1320T1	chr10	129046874	DC1320tail	autochthonous	sgMsh2	129046874	T	G	SNV	Mutect2;Vardict	2	0.019	344	0	0	NA	exonic	Olfr765	nonsynonymous SNV	Olfr765:NM_001085477:exon1:c.A188C:p.N63T	10qD3	chr10-4453448-130453386	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr11	69431114	DC1320tail	autochthonous	sgMsh2	69431114	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	62	4	0	0	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon74:c.T11379G:p.P3793P	11qB3	chr11-3133133-69579350	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.29774932	2	0.6848991	GAG	synonymous	NA	NA	NA	NA
DC1320T1	chr11	74054269	DC1320tail	autochthonous	sgMsh2	74054269	A	G	SNV	Mutect2;Vardict	2	0.04	163	0	0	NA	exonic	Olfr399	synonymous SNV	Olfr399:NM_147004:exon1:c.T489C:p.T163T	11qB4	chr11-69590981-121290722	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.186093325	3	0.9988181	CAG	synonymous	NA	NA	NA	NA
DC1320T1	chr11	108013011	DC1320tail	autochthonous	sgMsh2	108013011	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	90	16	1	0.0625	exonic	Prkca	nonsynonymous SNV	Prkca:NM_011101:exon7:c.G755T:p.R252L	11qE1	chr11-69590981-121290722	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.232616656	3	0.8469082	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr13	6597962	DC1320tail	autochthonous	sgMsh2	6597962	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	114	62	0	0	exonic	Pfkp	nonsynonymous SNV	Pfkp:NM_019703:exon16:c.C1577T:p.A526V	13qA1	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.269835321	3	0.5087642	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr13	21142826	DC1320tail	autochthonous	sgMsh2	21142826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	171	0	0	NA	exonic	Olfr1368	nonsynonymous SNV	Olfr1368:NM_146534:exon1:c.T230C:p.I77T	13qA2	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.432666981	2	0.9999935	AAT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr13	24098982	DC1320tail	autochthonous	sgMsh2	24098982	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	226	35	0	0	exonic	Carmil1	frameshift deletion	"Carmil1:NM_001311122:exon19:c.1556delA:p.N519Ifs*4,Carmil1:NM_001384122:exon19:c.1556delA:p.N519Ifs*4,Carmil1:NM_026825:exon20:c.1568delA:p.N523Ifs*4"	13qA3.1	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.432666981	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1320T1	chr13	73634242	DC1320tail	autochthonous	sgMsh2	73634242	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	171	4	0	0	exonic	Tert	nonsynonymous SNV	"Tert:NM_009354:exon3:c.A1634G:p.Q545R,Tert:NM_001362387:exon4:c.A455G:p.Q152R,Tert:NM_001362388:exon4:c.A20G:p.Q7R"	13qC1	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.232616656	3	0.9582079	CAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr13	74157627	DC1320tail	autochthonous	sgMsh2	74157627	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.089	126	0	0	NA	exonic	Slc9a3	frameshift deletion	Slc9a3:NM_001081060:exon5:c.762delG:p.G256Afs*14	13qC1	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.414057648	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1320T1	chr13	81419877	DC1320tail	autochthonous	sgMsh2	81419877	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	256	0	0	NA	exonic	Adgrv1	frameshift deletion	Adgrv1:NM_054053:exon74:c.15176delT:p.F5059Sfs*11	13qC3	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.469885646	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr13	99339961	DC1320tail	autochthonous	sgMsh2	99339961	G	A	SNV	Mutect2;Vardict	2	0.053	89	76	9	0.118421053	exonic	Ptcd2	nonsynonymous SNV	Ptcd2:NM_026873:exon3:c.C269T:p.T90M	13qD1	chr13-5861853-119495179	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.246573656	3	0.746332	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr14	16398657	DC1320tail	autochthonous	sgMsh2	16398657	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	114	64	0	0	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon12:c.G1420A:p.A474T	14qA2	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.22331199	3	0.9343812	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr14	31008658	DC1320tail	autochthonous	sgMsh2	31008658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	151	50	7	0.14	exonic	Glt8d1	synonymous SNV	"Glt8d1:NM_001165930:exon4:c.G120A:p.S40S,Glt8d1:NM_029626:exon4:c.G120A:p.S40S"	14qB	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.455928647	2	0.9999141	CGG	synonymous	NA	NA	NA	NA
DC1320T1	chr14	59596918	DC1320tail	autochthonous	sgMsh2	59596918	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	164	64	9	0.140625	exonic	Cdadc1	nonsynonymous SNV	"Cdadc1:NM_001168535:exon2:c.C124A:p.L42I,Cdadc1:NM_001168536:exon2:c.C124A:p.L42I,Cdadc1:NM_001168537:exon2:c.C124A:p.L42I,Cdadc1:NM_001168538:exon2:c.C124A:p.L42I,Cdadc1:NM_027986:exon2:c.C124A:p.L42I"	14qC3	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.432666981	2	0.9999899	AGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr14	64029934	DC1320tail	autochthonous	sgMsh2	64029934	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	86	0	0	NA	exonic	Rp1l1	nonsynonymous SNV	Rp1l1:NM_146246:exon4:c.C2968A:p.P990T	14qD1	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.414057648	2	0.9973144	CCC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr14	66149098	DC1320tail	autochthonous	sgMsh2	66149098	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	179	0	0	NA	exonic	Chrna2	nonsynonymous SNV	Chrna2:NM_144803:exon6:c.A692G:p.D231G	14qD1	chr14-3072210-123592557	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.134917661	3	0.9999933	GAC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr15	7305117	DC1320tail	autochthonous	sgMsh2	7305117	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	174	3	0	0	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon4:c.A394G:p.T132A,Egflam:NM_178748:exon4:c.A394G:p.T132A"	15qA1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.23726899	3	0.9418585	GTC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr15	9687855	DC1320tail	autochthonous	sgMsh2	9687855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	202	0	0	NA	exonic	Spef2	synonymous SNV	"Spef2:NM_177123:exon10:c.T1479C:p.A493A,Spef2:NM_001305042:exon11:c.T1650C:p.A550A"	15qA1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.53501831	2	0.9906486	CAG	synonymous	NA	NA	NA	NA
DC1320T1	chr15	26409319	DC1320tail	autochthonous	sgMsh2	26409319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	225	0	0	NA	exonic	Marchf11	nonsynonymous SNV	Marchf11:NM_177597:exon4:c.G1103T:p.G368V	15qB1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	2	0.9999996	GGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr15	71448695	DC1320tail	autochthonous	sgMsh2	71448695	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	321	0	0	NA	exonic	Fam135b	frameshift deletion	Fam135b:NM_177819:exon19:c.3982delA:p.T1328Pfs*13	15qD3	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.38614365	NA	NA	GTT	frameshift	NA	NA	NA	-1
DC1320T1	chr15	98543573	DC1320tail	autochthonous	sgMsh2	98543573	G	-	Deletion	Strelka2;Vardict	2	0.1081	185	35	5	0.142857143	exonic	Ccnt1	frameshift deletion	Ccnt1:NM_009833:exon9:c.1813delC:p.L605Ffs*3	15qF1	chr15-3341105-103103068	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.502917211	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
DC1320T1	chr16	4614072	DC1320tail	autochthonous	sgMsh2	4614072	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	64	23	1	0.043478261	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon7:c.C1462A:p.L488M	16qA1	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.474537979	2	0.9890162	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	32039864	DC1320tail	autochthonous	sgMsh2	32039864	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	160	183	4	0.021857923	exonic	Pak2	nonsynonymous SNV	Pak2:NM_177326:exon7:c.C644T:p.A215V	16qB2	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.167483993	3	0.9996933	GGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	32668378	DC1320tail	autochthonous	sgMsh2	32668378	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.105	50	62	0	0	exonic	Tnk2	nonsynonymous SNV	"Tnk2:NM_001110147:exon4:c.A392C:p.K131T,Tnk2:NM_016788:exon4:c.A392C:p.K131T"	16qB3	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.488494979	2	0.9733222	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	34205308	DC1320tail	autochthonous	sgMsh2	34205308	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	121	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon22:c.T3542G:p.L1181R,Kalrn:NM_177357:exon22:c.T3542G:p.L1181R"	16qB3	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.260530655	3	0.6423465	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	38499005	DC1320tail	autochthonous	sgMsh2	38499005	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	77	74	9	0.121621622	exonic	Timmdc1	synonymous SNV	Timmdc1:NM_024273:exon7:c.C786T:p.D262D	16qB4	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.321010986	2	0.867728	CGT	synonymous	NA	NA	NA	NA
DC1320T1	chr16	44220076	DC1320tail	autochthonous	sgMsh2	44220076	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	113	15	4	0.266666667	exonic	Usf3	stopgain	Usf3:NM_001029889:exon8:c.C4918T:p.R1640X	16qB4	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.167483993	3	0.9968319	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	44370934	DC1320tail	autochthonous	sgMsh2	44370934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	111	16	2	0.125	exonic	Spice1	nonsynonymous SNV	Spice1:NM_144550:exon10:c.T1150C:p.Y384H	16qB4	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.232616656	3	0.8888621	GTA	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr16	45143932	DC1320tail	autochthonous	sgMsh2	45143932	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	133	57	2	0.035087719	exonic	Slc35a5	frameshift deletion	"Slc35a5:NM_001356453:exon6:c.934delT:p.Y312Mfs*7,Slc35a5:NM_028756:exon6:c.937delT:p.Y313Mfs*7"	16qB5	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.539670643	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr16	57171694	DC1320tail	autochthonous	sgMsh2	57171694	T	-	Deletion	Strelka2;Vardict	2	0.073	137	58	2	0.034482759	exonic	Tbc1d23	frameshift deletion	"Tbc1d23:NM_001358434:exon14:c.1248delA:p.K416Nfs*3,Tbc1d23:NM_026254:exon17:c.1902delA:p.K634Nfs*3,Tbc1d23:NM_001358433:exon18:c.1947delA:p.K649Nfs*3"	16qC1.1	chr16-3948854-96819699	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.339620318	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
DC1320T1	chr17	13825961	DC1320tail	autochthonous	sgMsh2	13825961	C	T	SNV	Mutect2;Vardict	2	0.022	260	1	0	0	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon9:c.C1196T:p.A399V	17qA1	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.102351329	3	1.49E-09	GCC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr17	19394030	DC1320tail	autochthonous	sgMsh2	19394030	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.019	812	0	0	NA	exonic	Vmn2r99	nonsynonymous SNV	Vmn2r99:NM_001104551:exon6:c.A2011T:p.T671S	17qA3.2	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.088394329	3	1	CAC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr17	24569608	DC1320tail	autochthonous	sgMsh2	24569608	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	90	3	0	0	exonic	Pkd1	nonsynonymous SNV	Pkd1:NM_013630:exon11:c.C2339A:p.P780H	17qA3.3	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.31170632	2	0.8590017	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr17	25937143	DC1320tail	autochthonous	sgMsh2	25937143	G	T	SNV	Mutect2;Vardict	2	0.054	78	77	4	0.051948052	exonic	Pigq	nonsynonymous SNV	"Pigq:NM_001291025:exon2:c.C310A:p.L104I,Pigq:NM_001357592:exon2:c.C310A:p.L104I,Pigq:NM_011822:exon2:c.C310A:p.L104I"	17qA3.3	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.251225989	3	6.94E-07	AGT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr17	35668489	DC1320tail	autochthonous	sgMsh2	35668489	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	163	45	0	0	exonic	Gtf2h4	frameshift deletion	Gtf2h4:NM_010364:exon13:c.1158delC:p.T387Pfs*1	17qB1	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.38614365	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1320T1	chr17	35897865	DC1320tail	autochthonous	sgMsh2	35897865	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	98	21	0	0	exonic	Atat1	nonsynonymous SNV	"Atat1:NM_001347378:exon12:c.C1073A:p.P358H,Atat1:NM_001142744:exon13:c.C1142A:p.P381H"	17qB1	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.428014648	2	0.9991885	AGG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr17	46310125	DC1320tail	autochthonous	sgMsh2	46310125	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	75	6	0	0	exonic	Abcc10	synonymous SNV	"Abcc10:NM_145140:exon12:c.C2835T:p.C945C,Abcc10:NM_001347396:exon13:c.C2958T:p.C986C,Abcc10:NM_170680:exon13:c.C2958T:p.C986C"	17qC	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.395448316	2	0.9895088	TGC	synonymous	NA	NA	NA	NA
DC1320T1	chr17	87718638	DC1320tail	autochthonous	sgMsh2	87718638	-	A	Insertion	Strelka2;Vardict	2	0.6727	110	9	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3170973-94834206	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
DC1320T1	chr18	31896710	DC1320tail	autochthonous	sgMsh2	31896710	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	85	30	0	0	exonic	Wdr33	synonymous SNV	Wdr33:NM_028866:exon18:c.C2961T:p.G987G	18qB1	chr18-3325290-88974479	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.23726899	3	9.55E-08	GCC	synonymous	NA	NA	NA	NA
DC1320T1	chr18	37727626	DC1320tail	autochthonous	sgMsh2	37727626	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	182	0	0	NA	exonic	Pcdhga8	synonymous SNV	Pcdhga8:NM_033591:exon1:c.G1734A:p.A578A	18qB3	chr18-3325290-88974479	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.669935971	1	0.9986293	CGC	synonymous	NA	NA	NA	NA
DC1320T1	chr18	65305859	DC1320tail	autochthonous	sgMsh2	65305859	C	T	SNV	Mutect2;Vardict	2	0.059	69	5	0	0	exonic	Alpk2	nonsynonymous SNV	Alpk2:NM_001037294:exon5:c.G3863A:p.G1288D	18qE1	chr18-3325290-88974479	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.274487655	2	8.32E-06	ACC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr18	67491310	DC1320tail	autochthonous	sgMsh2	67491310	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	80	11	0	0	exonic	Spire1	nonsynonymous SNV	"Spire1:NM_176832:exon14:c.G1529A:p.R510Q,Spire1:NM_194355:exon17:c.G2348A:p.R783Q"	18qE1	chr18-3325290-88974479	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.483842645	2	0.9928411	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr19	3265575	DC1320tail	autochthonous	sgMsh2	3265575	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	174	6	1	0.166666667	exonic	Ighmbp2	nonsynonymous SNV	Ighmbp2:NM_009212:exon13:c.C1844A:p.T615N	19qA	NA	NA	NA	NA	0.807	3.754432835	POOR GOF (78.9%)	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr19	20727473	DC1320tail	autochthonous	sgMsh2	20727473	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	278	126	13	0.103174603	exonic	Aldh1a7	nonsynonymous SNV	Aldh1a7:NM_011921:exon1:c.G40A:p.A14T	19qB	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.325663319	2	0.999579	GCC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr19	30547353	DC1320tail	autochthonous	sgMsh2	30547353	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.062	100	0	0	NA	exonic	Dkk1	frameshift deletion	Dkk1:NM_010051:exon4:c.651delA:p.K217Nfs*60	19qC1	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.288444654	NA	NA	GTT	frameshift	NA	NA	NA	-1
DC1320T1	chr19	47733839	DC1320tail	autochthonous	sgMsh2	47733839	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	126	333	39	0.117117117	exonic	Sfr1	synonymous SNV	Sfr1:NM_026377:exon3:c.A693G:p.R231R	19qD1	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.479190312	2	0.9989495	GAT	synonymous	GATT	8	GATTGATT	NA
DC1320T1	chr19	57654819	DC1320tail	autochthonous	sgMsh2	57654819	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.024	271	36	1	0.027777778	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon8:c.G1138A:p.V380I	19qD2	chr19-3491023-60580294	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.111655995	3	1.70E-09	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr2	32305832	DC1320tail	autochthonous	sgMsh2	32305832	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	118	111	5	0.045045045	exonic	Golga2	synonymous SNV	"Golga2:NM_001362698:exon21:c.T2265C:p.L755L,Golga2:NM_001362696:exon22:c.T2361C:p.L787L,Golga2:NM_001362697:exon22:c.T2346C:p.L782L,Golga2:NM_001080968:exon23:c.T2442C:p.L814L,Golga2:NM_001362695:exon23:c.T2442C:p.L814L,Golga2:NM_133852:exon24:c.T2523C:p.L841L"	2qB	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.37218665	2	0.9973614	TTG	synonymous	NA	NA	NA	NA
DC1320T1	chr2	52074312	DC1320tail	autochthonous	sgMsh2	52074312	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	159	11	1	0.090909091	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon3:c.A170G:p.Y57C,Rif1:NM_001355415:exon3:c.A170G:p.Y57C,Rif1:NM_175238:exon3:c.A170G:p.Y57C"	2qC1.1	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.195397991	3	0.9971174	TAC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr2	62850619	DC1320tail	autochthonous	sgMsh2	62850619	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	155	2	2	1	exonic	Kcnh7	nonsynonymous SNV	Kcnh7:NM_133207:exon4:c.G623A:p.C208Y	2qC1.3	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.274487655	2	0.5880042	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr2	67512619	DC1320tail	autochthonous	sgMsh2	67512619	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	147	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A5203C:p.I1735L,Xirp2:NM_001083919:exon7:c.A5203C:p.I1735L"	2qC1.3	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.269835321	3	0.5018386	GAT	nonsynonymous	ATCC	9	ATCCATCCA	NA
DC1320T1	chr2	76729380	DC1320tail	autochthonous	sgMsh2	76729380	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	203	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon163:c.C63695T:p.S21232L,Ttn:NM_011652:exon284:c.C83438T:p.S27813L,Ttn:NM_001385708:exon321:c.C89270T:p.S29757L"	2qC3	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.214007324	3	0.9961695	CGA	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr2	76768213	DC1320tail	autochthonous	sgMsh2	76768213	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	260	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon132:c.T33374C:p.L11125P,Ttn:NM_011652:exon253:c.T53117C:p.L17706P,Ttn:NM_001385708:exon290:c.T58949C:p.L19650P"	2qC3	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.209354991	3	0.9995398	CAG	nonsynonymous	CTTCAG	15	CTTCAGCTTCAGCTT	NA
DC1320T1	chr2	82990806	DC1320tail	autochthonous	sgMsh2	82990806	C	-	Deletion	Mutect2;Vardict	2	0.06	242	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon17:c.16876delC:p.S5628Afs*1	2qD	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.279139988	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1320T1	chr2	85800071	DC1320tail	autochthonous	sgMsh2	85800071	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	295	0	0	NA	exonic	Olfr1016	synonymous SNV	Olfr1016:NM_001011758:exon1:c.T198A:p.S66S	2qD	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.195397991	3	0.9999782	AAG	synonymous	NA	NA	NA	NA
DC1320T1	chr2	88339599	DC1320tail	autochthonous	sgMsh2	88339599	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	181	0	0	NA	exonic	Olfr1176	synonymous SNV	Olfr1176:NM_146771:exon1:c.C33T:p.V11V	2qD	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.395448316	2	0.9999869	TCG	synonymous	NA	NA	NA	NA
DC1320T1	chr2	90464603	DC1320tail	autochthonous	sgMsh2	90464603	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	75	14	0	0	exonic	Ptprj	frameshift deletion	"Ptprj:NM_001135657:exon6:c.981delG:p.T328Pfs*55,Ptprj:NM_008982:exon6:c.924delG:p.T309Pfs*55"	2qE1	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.804853631	NA	NA	TCC	frameshift	C	5	CCCCC	-1
DC1320T1	chr2	137087122	DC1320tail	autochthonous	sgMsh2	137087122	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	103	37	3	0.081081081	exonic	Jag1	nonsynonymous SNV	Jag1:NM_013822:exon20:c.C2413T:p.R805W	2qF3	chr2-4513773-181511691	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.567584642	2	0.8716481	CGA	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr3	49745073	DC1320tail	autochthonous	sgMsh2	49745073	T	-	Deletion	Strelka2;Vardict	2	0.1014	148	2	0	0	exonic	Pcdh18	frameshift deletion	Pcdh18:NM_130448:exon4:c.2939delA:p.K980Rfs*27	3qC	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.471746579	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
DC1320T1	chr3	87976184	DC1320tail	autochthonous	sgMsh2	87976184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	125	17	0	0	exonic	Nes	synonymous SNV	Nes:NM_016701:exon4:c.A1749G:p.P583P	3qF1	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.502451978	2	0.9960061	CAC	synonymous	NA	NA	NA	NA
DC1320T1	chr3	90273972	DC1320tail	autochthonous	sgMsh2	90273972	C	T	SNV	Mutect2;Vardict	2	0.047	92	3	0	0	exonic	Dennd4b	nonsynonymous SNV	"Dennd4b:NM_001356483:exon16:c.C2401T:p.R801W,Dennd4b:NM_201407:exon16:c.C2434T:p.R812W"	3qF1	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.218659657	3	0.9153057	ACG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr3	90392824	DC1320tail	autochthonous	sgMsh2	90392824	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	214	120	7	0.058333333	exonic	Ints3	nonsynonymous SNV	"Ints3:NM_145540:exon27:c.C2785A:p.L929I,Ints3:NM_178876:exon27:c.C2785A:p.L929I"	3qF1	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.269835321	2	0.512222	AGG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr3	145930477	DC1320tail	autochthonous	sgMsh2	145930477	A	-	Deletion	Strelka2;Vardict	2	0.0826	121	186	20	0.107526882	exonic	Bcl10	frameshift deletion	Bcl10:NM_009740:exon2:c.129delA:p.I46Yfs*1	3qH2	chr3-11824041-159911278	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.384282716	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
DC1320T1	chr4	55011582	DC1320tail	autochthonous	sgMsh2	55011582	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.096	102	3	0	0	exonic	Zfp462	frameshift deletion	Zfp462:NM_172867:exon3:c.3547delT:p.C1185Afs*30	4qB2	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.44662398	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1320T1	chr4	57709730	DC1320tail	autochthonous	sgMsh2	57709730	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	160	0	0	NA	exonic	Pakap	nonsynonymous SNV	"Pakap:NM_172868:exon6:c.G674A:p.S225N,Pakap:NM_001384149:exon7:c.G680A:p.S227N"	4qB3	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.195397991	3	0.9972189	AGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr4	102964627	DC1320tail	autochthonous	sgMsh2	102964627	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.069	270	0	0	NA	exonic	Sgip1	frameshift deletion	"Sgip1:NM_001285862:exon16:c.1325delA:p.K443Nfs*25,Sgip1:NM_001285860:exon19:c.1418delA:p.K474Nfs*25,Sgip1:NM_001285859:exon20:c.1478delA:p.K494Nfs*25,Sgip1:NM_144906:exon20:c.1919delA:p.K641Nfs*25,Sgip1:NM_001285852:exon22:c.2063delA:p.K689Nfs*25"	4qC6	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.321010986	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr4	112711649	DC1320tail	autochthonous	sgMsh2	112711649	A	G	SNV	Mutect2;Vardict	2	0.02	382	0	0	NA	exonic	Skint10	synonymous SNV	Skint10:NM_177668:exon7:c.T870C:p.D290D	4qD1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.093046663	3	1.00E-09	GAT	synonymous	NA	NA	NA	NA
DC1320T1	chr4	112894846	DC1320tail	autochthonous	sgMsh2	112894846	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.023	244	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon30:c.G2341A:p.E781K	4qD1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.107003662	3	4.20E-09	CCT	nonsynonymous	T	5	TTTTT	NA
DC1320T1	chr4	117044583	DC1320tail	autochthonous	sgMsh2	117044583	A	-	Deletion	Strelka2;Vardict	2	0.1085	212	36	0	0	exonic	Eif2b3	frameshift deletion	"Eif2b3:NM_001111277:exon4:c.442delA:p.K150Nfs*57,Eif2b3:NM_175135:exon4:c.442delA:p.K150Nfs*57"	4qD1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.504778144	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
DC1320T1	chr4	133588586	DC1320tail	autochthonous	sgMsh2	133588586	C	T	SNV	Mutect2;Vardict	2	0.043	96	35	0	0	exonic	Gpn2	stopgain	"Gpn2:NM_001290742:exon3:c.C586T:p.R196X,Gpn2:NM_133884:exon3:c.C655T:p.R219X"	4qD2.3	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.200050325	3	0.9664587	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr4	141306527	DC1320tail	autochthonous	sgMsh2	141306527	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	169	137	9	0.065693431	exonic	Epha2	synonymous SNV	Epha2:NM_010139:exon2:c.C96T:p.D32D	4qD3	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.251225989	3	0.8239102	ACT	synonymous	NA	NA	NA	NA
DC1320T1	chr4	141474364	DC1320tail	autochthonous	sgMsh2	141474364	C	A	SNV	Mutect2;Vardict	2	0.03	179	21	2	0.095238095	exonic	Spen	nonsynonymous SNV	"Spen:NM_001347235:exon11:c.G6882T:p.K2294N,Spen:NM_019763:exon12:c.G6951T:p.K2317N"	4qD3	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.139569994	3	0.9999899	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr4	144622751	DC1320tail	autochthonous	sgMsh2	144622751	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	161	0	0	NA	exonic	Aadacl4	nonsynonymous SNV	Aadacl4:NM_001081248:exon4:c.A577C:p.S193R	4qE1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.181440992	3	0.9991145	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr4	147613958	DC1320tail	autochthonous	sgMsh2	147613958	T	A	SNV	Mutect2;MuSe;Vardict	3	0.045	613	4	0	0	exonic	Zfp979	nonsynonymous SNV	Zfp979:NM_145078:exon5:c.A293T:p.E98V	4qE1	chr4-5799947-156200568	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.209354991	3	1.72E-08	CTC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	38769847	DC1320tail	autochthonous	sgMsh2	38769847	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	122	0	0	NA	exonic	Clnk	synonymous SNV	Clnk:NM_013748:exon6:c.C288T:p.Y96Y	5qB3	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.246573656	3	0.8070241	CGT	synonymous	NA	NA	NA	NA
DC1320T1	chr5	44541836	DC1320tail	autochthonous	sgMsh2	44541836	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	201	11	0	0	exonic	Ldb2	frameshift deletion	"Ldb2:NM_001077398:exon3:c.259delC:p.R87Vfs*10,Ldb2:NM_001286348:exon3:c.259delC:p.R87Vfs*10,Ldb2:NM_001347349:exon3:c.259delC:p.R87Vfs*10,Ldb2:NM_001359070:exon3:c.259delC:p.R87Vfs*10,Ldb2:NM_001359071:exon3:c.259delC:p.R87Vfs*10,Ldb2:NM_010698:exon3:c.259delC:p.R87Vfs*10"	5qB3	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.539670643	NA	NA	CGG	frameshift	NA	NA	NA	-1
DC1320T1	chr5	86892944	DC1320tail	autochthonous	sgMsh2	86892944	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	185	8	0	0	exonic	Ugt2b34	nonsynonymous SNV	Ugt2b34:NM_153598:exon5:c.C1118T:p.A373V	5qE1	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.325663319	2	0.9941096	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	87254428	DC1320tail	autochthonous	sgMsh2	87254428	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	313	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A343C:p.N115H	5qE1	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.130265328	3	1.48E-09	TTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	100038770	DC1320tail	autochthonous	sgMsh2	100038770	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	178	142	15	0.105633803	exonic	Hnrnpdl	nonsynonymous SNV	Hnrnpdl:NM_016690:exon1:c.G393T:p.E131D	5qE4	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.493147312	2	0.9995477	ACT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	107142528	DC1320tail	autochthonous	sgMsh2	107142528	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	187	17	1	0.058823529	exonic	Tgfbr3	nonsynonymous SNV	Tgfbr3:NM_011578:exon8:c.T910G:p.F304V	5qE5	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.404752982	2	0.999996	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	110295302	DC1320tail	autochthonous	sgMsh2	110295302	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	298	6	0	0	exonic	Pole	frameshift deletion	Pole:NM_011132:exon11:c.1095delT:p.F367Lfs*20	5qF	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.586193974	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1320T1	chr5	121375828	DC1320tail	autochthonous	sgMsh2	121375828	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	190	104	9	0.086538462	exonic	Trafd1	synonymous SNV	"Trafd1:NM_001163470:exon7:c.C895T:p.L299L,Trafd1:NM_001359947:exon7:c.C895T:p.L299L,Trafd1:NM_172275:exon7:c.C895T:p.L299L"	5qF	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.567584642	2	0.8506235	AGC	synonymous	NA	NA	NA	NA
DC1320T1	chr5	124400841	DC1320tail	autochthonous	sgMsh2	124400841	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	204	85	0	0	exonic	Sbno1	nonsynonymous SNV	"Sbno1:NM_001081203:exon13:c.T1556G:p.I519S,Sbno1:NM_001359978:exon13:c.T1556G:p.I519S,Sbno1:NM_001359979:exon13:c.T1553G:p.I518S"	5qF	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.209354991	3	0.9976633	GAT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	139235559	DC1320tail	autochthonous	sgMsh2	139235559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	88	68	8	0.117647059	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon9:c.C1028T:p.A343V,Sun1:NM_001256117:exon11:c.C1127T:p.A376V,Sun1:NM_001359496:exon12:c.C1193T:p.A398V,Sun1:NM_001256115:exon13:c.C1385T:p.A462V,Sun1:NM_001256116:exon13:c.C1304T:p.A435V,Sun1:NM_001359494:exon13:c.C1304T:p.A435V,Sun1:NM_024451:exon14:c.C1496T:p.A499V"	5qG2	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.44662398	2	0.9983059	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr5	150569076	DC1320tail	autochthonous	sgMsh2	150569076	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.07	215	8	0	0	exonic	Brca2	frameshift deletion	"Brca2:NM_001081001:exon27:c.9555delA:p.T3187Pfs*9,Brca2:NM_009765:exon27:c.9555delA:p.T3187Pfs*9"	5qG3	chr5-3673201-150769641	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.325663319	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1320T1	chr6	13083411	DC1320tail	autochthonous	sgMsh2	13083411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	258	174	12	0.068965517	exonic	Tmem106b	synonymous SNV	Tmem106b:NM_027992:exon8:c.A678G:p.V226V	6qA1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.339620318	2	0.9998745	TAC	synonymous	NA	NA	NA	NA
DC1320T1	chr6	38391446	DC1320tail	autochthonous	sgMsh2	38391446	T	G	SNV	Mutect2;Vardict	2	0.027	200	9	0	0	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon6:c.T427G:p.F143V	6qB1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.125612994	3	0.9999993	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	40493955	DC1320tail	autochthonous	sgMsh2	40493955	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	382	0	0	NA	exonic	Tas2r108	nonsynonymous SNV	Tas2r108:NM_020502:exon1:c.C364T:p.R122W	6qB1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.130265328	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	48650267	DC1320tail	autochthonous	sgMsh2	48650267	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	246	7	0	0	exonic	Gimap8	synonymous SNV	"Gimap8:NM_001286629:exon2:c.C174T:p.G58G,Gimap8:NM_212486:exon2:c.C174T:p.G58G,Gimap8:NM_001077410:exon3:c.C174T:p.G58G"	6qB2.3	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.200050325	3	0.9997769	GCG	synonymous	NA	NA	NA	NA
DC1320T1	chr6	83264411	DC1320tail	autochthonous	sgMsh2	83264411	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	100	5	0	0	exonic	Slc4a5	nonsynonymous SNV	Slc4a5:NM_001166067:exon7:c.T668C:p.V223A	6qC3	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.38614365	2	0.9966254	GTC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	121648099	DC1320tail	autochthonous	sgMsh2	121648099	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	176	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon12:c.A1435C:p.T479P	6qF1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.23726899	3	0.9435068	AAC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	121657960	DC1320tail	autochthonous	sgMsh2	121657960	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	370	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon17:c.T2065G:p.L689V	6qF1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.38614365	2	1.49E-09	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	122851209	DC1320tail	autochthonous	sgMsh2	122851209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	165	6	0	0	exonic	C3ar1	synonymous SNV	C3ar1:NM_009779:exon2:c.G48A:p.R16R	6qF2	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.404752982	2	0.9999825	GCC	synonymous	NA	NA	NA	NA
DC1320T1	chr6	129330949	DC1320tail	autochthonous	sgMsh2	129330949	T	-	Deletion	Mutect2;Vardict	2	0.068	250	0	0	NA	exonic	Clec2m	frameshift deletion	Clec2m:NM_199034:exon2:c.156delA:p.K52Nfs*16	6qF3	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.316358653	NA	NA	ATT	frameshift	NA	NA	NA	-1
DC1320T1	chr6	132893134	DC1320tail	autochthonous	sgMsh2	132893134	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	293	0	0	NA	exonic	Tas2r113	nonsynonymous SNV	Tas2r113:NM_207018:exon1:c.T124A:p.S42T	6qG1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.469885646	2	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr6	136044013	DC1320tail	autochthonous	sgMsh2	136044013	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.095	199	0	0	NA	exonic	Grin2b	frameshift deletion	"Grin2b:NM_001363750:exon4:c.289delG:p.V97Wfs*35,Grin2b:NM_008171:exon4:c.289delG:p.V97Wfs*35"	6qG1	chr6-3483595-149055161	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.441971647	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1320T1	chr7	14253476	DC1320tail	autochthonous	sgMsh2	14253476	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.024	324	0	0	NA	exonic	Sult2a6	nonsynonymous SNV	Sult2a6:NM_001081325:exon2:c.A273C:p.E91D	7qA1	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.111655995	3	1.01E-09	CTT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
DC1320T1	chr7	28614861	DC1320tail	autochthonous	sgMsh2	28614861	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	124	0	0	NA	exonic	Acp7	nonsynonymous SNV	Acp7:NM_175319:exon7:c.G807T:p.Q269H	7qB1	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.293096987	2	0.8019887	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	45050270	DC1320tail	autochthonous	sgMsh2	45050270	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	53	28	3	0.107142857	exonic	Prr12	frameshift deletion	Prr12:NM_175022:exon3:c.296delG:p.G99Afs*92	7qB3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.576889308	NA	NA	GCC	frameshift	G	5	GGGGG	-1
DC1320T1	chr7	67268111	DC1320tail	autochthonous	sgMsh2	67268111	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	116	28	0	0	exonic	Mef2a	frameshift deletion	"Mef2a:NM_001291191:exon5:c.352delA:p.I118Lfs*7,Mef2a:NM_001291192:exon5:c.352delA:p.I118Lfs*7,Mef2a:NM_001357324:exon5:c.352delA:p.I118Lfs*7"	7qC	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.544322976	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1320T1	chr7	75866306	DC1320tail	autochthonous	sgMsh2	75866306	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	130	22	1	0.045454545	exonic	Klhl25	nonsynonymous SNV	"Klhl25:NM_001122780:exon2:c.T959A:p.I320N,Klhl25:NM_029652:exon2:c.T959A:p.I320N,Klhl25:NM_182782:exon2:c.T959A:p.I320N"	7qD1	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.428014648	2	0.9999147	ATT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	86585627	DC1320tail	autochthonous	sgMsh2	86585627	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	482	0	0	NA	exonic	Olfr295	synonymous SNV	Olfr295:NM_146851:exon1:c.C351A:p.A117A	7qD3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.604803307	1	0.9989829	CCC	synonymous	NA	NA	NA	NA
DC1320T1	chr7	98065663	DC1320tail	autochthonous	sgMsh2	98065663	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	80	10	0	0	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon34:c.C4654A:p.L1552I,Myo7a:NM_001256081:exon35:c.C4801A:p.L1601I,Myo7a:NM_001256082:exon35:c.C4672A:p.L1558I,Myo7a:NM_008663:exon35:c.C4687A:p.L1563I"	7qE1	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.381491317	2	0.9870921	AGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	102236149	DC1320tail	autochthonous	sgMsh2	102236149	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	160	162	3	0.018518519	exonic	Pgap2	nonsynonymous SNV	"Pgap2:NM_001382593:exon3:c.G221A:p.R74H,Pgap2:NM_001382594:exon3:c.G221A:p.R74H,Pgap2:NM_001382597:exon3:c.G239A:p.R80H,Pgap2:NM_001382598:exon3:c.G239A:p.R80H,Pgap2:NM_001382603:exon3:c.G239A:p.R80H,Pgap2:NM_001291358:exon4:c.G221A:p.R74H,Pgap2:NM_001382592:exon4:c.G221A:p.R74H,Pgap2:NM_001382595:exon4:c.G221A:p.R74H,Pgap2:NM_001382596:exon4:c.G221A:p.R74H,Pgap2:NM_001382599:exon4:c.G221A:p.R74H,Pgap2:NM_001382601:exon4:c.G221A:p.R74H,Pgap2:NM_001382604:exon4:c.G221A:p.R74H,Pgap2:NM_001382605:exon4:c.G221A:p.R74H,Pgap2:NM_001382607:exon4:c.G221A:p.R74H,Pgap2:NM_001382608:exon4:c.G221A:p.R74H,Pgap2:NM_145583:exon4:c.G221A:p.R74H,Pgap2:NM_001374617:exon5:c.G221A:p.R74H"	7qE2	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.23726899	3	0.9289994	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	102928348	DC1320tail	autochthonous	sgMsh2	102928348	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	186	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T719C:p.L240P	7qE3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.158179326	3	0.9999642	CTC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	103639987	DC1320tail	autochthonous	sgMsh2	103639987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	251	0	0	NA	exonic	Olfr622	nonsynonymous SNV	Olfr622:NM_147083:exon1:c.A152G:p.K51R	7qE3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	2	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr7	104357411	DC1320tail	autochthonous	sgMsh2	104357411	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	207	0	0	NA	exonic	Trim30b	synonymous SNV	Trim30b:NM_175648:exon2:c.T237A:p.T79T	7qE3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.167483993	3	0.9999704	AAG	synonymous	NA	NA	NA	NA
DC1320T1	chr7	106885871	DC1320tail	autochthonous	sgMsh2	106885871	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	89	0	0	NA	exonic	Olfr706	synonymous SNV	Olfr706:NM_146353:exon1:c.T945C:p.T315T	7qE3	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.260530655	3	0.6142677	GAG	synonymous	NA	NA	NA	NA
DC1320T1	chr7	119775133	DC1320tail	autochthonous	sgMsh2	119775133	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	188	0	0	NA	exonic	Acsm3	synonymous SNV	"Acsm3:NM_212441:exon7:c.T807A:p.T269T,Acsm3:NM_212442:exon7:c.T807A:p.T269T,Acsm3:NM_016870:exon8:c.T807A:p.T269T"	7qF2	chr7-4526592-143062472	4	2	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.548975309	2	0.96481	CTT	synonymous	NA	NA	NA	NA
DC1320T1	chr8	24948754	DC1320tail	autochthonous	sgMsh2	24948756	CAG	-	Deletion	Strelka2;Vardict	2	0.1	50	0	0	NA	exonic	Adam32	nonframeshift deletion	"Adam32:NM_001293693:exon1:c.40_42del:p.L14del,Adam32:NM_153397:exon1:c.40_42del:p.L14del"	8qA2	chr8-3192924-127409529	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.465233313	NA	NA	CCA	inframe	CAG	18	CAGCAGCAGCAGCAGCAG	-3
DC1320T1	chr8	114418174	DC1320tail	autochthonous	sgMsh2	114418174	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	110	0	0	NA	exonic	Clec3a	nonsynonymous SNV	Clec3a:NM_001007223:exon1:c.G89T:p.R30M	8qE1	chr8-3192924-127409529	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.251225989	3	7.55E-09	AGG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr8	121753036	DC1320tail	autochthonous	sgMsh2	121753036	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	67	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon2:c.G452A:p.G151D	8qE1	chr8-3192924-127409529	5	3	2	0.807	3.754432835	POOR GOF (78.9%)	1	0.618760306	2	6.33E-06	GGC	nonsynonymous	ATGGC	10	ATGGCATGGC	NA
DC1320T1	chr9	38085432	DC1320tail	autochthonous	sgMsh2	38085432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	396	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.T595C:p.F199L	9qA4	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	1	1	1	TTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr9	38499573	DC1320tail	autochthonous	sgMsh2	38499573	A	-	Deletion	Strelka2;Vardict	2	0.1373	102	0	0	NA	exonic	Olfr907	frameshift deletion	Olfr907:NM_146805:exon1:c.903delA:p.T304Lfs*1	9qA5.1	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.638765339	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
DC1320T1	chr9	44046903	DC1320tail	autochthonous	sgMsh2	44046903	C	G	SNV	Mutect2;Strelka2	2	0.094	55	21	0	0	exonic	Thy1	synonymous SNV	Thy1:NM_009382:exon3:c.C327G:p.V109V	9qA5.1	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.437319314	2	0.9834141	TCT	synonymous	NA	NA	NA	NA
DC1320T1	chr9	66751986	DC1320tail	autochthonous	sgMsh2	66751986	T	G	SNV	Mutect2;Vardict	2	0.035	159	0	0	NA	exonic	Car12	nonsynonymous SNV	"Car12:NM_001306148:exon6:c.T572G:p.L191R,Car12:NM_178396:exon6:c.T572G:p.L191R"	9qC	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.16283166	3	0.9997763	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr9	73017510	DC1320tail	autochthonous	sgMsh2	73017510	T	-	Deletion	Strelka2;Vardict	2	0.0496	121	30	1	0.033333333	exonic	Pigb	frameshift deletion	Pigb:NM_018889:exon11:c.1366delA:p.T456Lfs*11	9qD	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.230755723	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1320T1	chr9	74157344	DC1320tail	autochthonous	sgMsh2	74157344	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	155	0	0	NA	exonic	Wdr72	nonsynonymous SNV	Wdr72:NM_001033500:exon13:c.C1693G:p.R565G	9qD	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.288444654	2	0.8060894	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr9	82915377	DC1320tail	autochthonous	sgMsh2	82915377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	123	22	1	0.045454545	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon16:c.T1572C:p.P524P	9qE2	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.395448316	2	0.9994921	CAG	synonymous	NA	NA	NA	NA
DC1320T1	chr9	92266849	DC1320tail	autochthonous	sgMsh2	92266849	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	286	91	0	0	exonic	Plscr1	nonsynonymous SNV	Plscr1:NM_011636:exon7:c.C741A:p.S247R	9qE3.3	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.125612994	3	2.57E-09	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr9	108733195	DC1320tail	autochthonous	sgMsh2	108733195	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	144	82	7	0.085365854	exonic	Prkar2a	nonsynonymous SNV	Prkar2a:NM_008924:exon6:c.G622T:p.A208S	9qF2	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.725763968	1	0.9997692	AGC	nonsynonymous	NA	NA	NA	NA
DC1320T1	chr9	109338511	DC1320tail	autochthonous	sgMsh2	109338511	C	T	SNV	Mutect2;Vardict	2	0.037	422	2	0	0	exonic	Fbxw28	synonymous SNV	"Fbxw28:NM_001177419:exon3:c.G177A:p.P59P,Fbxw28:NM_001177420:exon3:c.G177A:p.P59P"	9qF2	chr9-7130668-123811654	3	2	1	0.807	3.754432835	POOR GOF (78.9%)	1	0.172136326	3	2.77E-09	GCG	synonymous	NA	NA	NA	NA
DC1320T1	chrX	133851444	DC1320tail	autochthonous	sgMsh2	133851444	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	96	0	0	NA	exonic	Tnmd	nonsynonymous SNV	Tnmd:NM_022322:exon2:c.A71C:p.K24T	XqE3	NA	NA	NA	NA	0.807	3.754432835	POOR GOF (78.9%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T1	chrX	145452519	DC1320tail	autochthonous	sgMsh2	145452519	C	T	SNV	Mutect2;Vardict	2	0.075	53	0	0	NA	exonic	Amot	synonymous SNV	"Amot:NM_001290274:exon9:c.G2286A:p.R762R,Amot:NM_153319:exon9:c.G2286A:p.R762R"	XqF2	NA	NA	NA	NA	0.807	3.754432835	POOR GOF (78.9%)	NA	NA	NA	NA	GCC	synonymous	NA	NA	NA	NA
DC1320T2	chr1	14231500	DC1320tail	autochthonous	sgMsh2	14231500	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	130	0	0	NA	exonic	Eya1	nonsynonymous SNV	"Eya1:NM_001252192:exon9:c.G777T:p.E259D,Eya1:NM_001310459:exon10:c.G876T:p.E292D,Eya1:NM_010164:exon10:c.G864T:p.E288D"	1qA3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.978404215	1	0.9999512	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr1	36553812	DC1320tail	autochthonous	sgMsh2	36553812	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	151	14	0	0	exonic	Sema4c	synonymous SNV	"Sema4c:NM_001126047:exon5:c.C324A:p.T108T,Sema4c:NM_001304329:exon5:c.C324A:p.T108T,Sema4c:NM_001304330:exon6:c.C324A:p.T108T"	1qB	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.218773613	3	0.9999999	CGG	synonymous	NA	NA	NA	NA
DC1320T2	chr1	66473410	DC1320tail	autochthonous	sgMsh2	66473410	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	108	0	0	NA	exonic	Unc80	stopgain	"Unc80:NM_001368824:exon4:c.C478T:p.Q160X,Unc80:NM_001368825:exon4:c.C478T:p.Q160X,Unc80:NM_175510:exon4:c.C478T:p.Q160X"	1qC3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9998968	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr1	66934518	DC1320tail	autochthonous	sgMsh2	66934518	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	181	0	0	NA	exonic	Myl1	nonsynonymous SNV	Myl1:NM_001113387:exon2:c.G28A:p.D10N	1qC3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.188388389	3	1.10E-09	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr1	88071471	DC1320tail	autochthonous	sgMsh2	88071471	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	539	0	0	NA	exonic	Ugt1a9	synonymous SNV	Ugt1a9:NM_201644:exon1:c.A642G:p.E214E	1qD	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.206619524	3	1	AAC	synonymous	NA	NA	NA	NA
DC1320T2	chr1	132523036	DC1320tail	autochthonous	sgMsh2	132523036	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	98	0	0	NA	exonic	Cntn2	nonsynonymous SNV	Cntn2:NM_177129:exon13:c.G1600T:p.A534S	1qE4	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.838632184	1	0.0945887	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr1	136943420	DC1320tail	autochthonous	sgMsh2	136943420	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	185	0	0	NA	exonic	Nr5a2	frameshift deletion	"Nr5a2:NM_001159769:exon5:c.210delT:p.F70Lfs*11,Nr5a2:NM_030676:exon5:c.393delT:p.F131Lfs*11"	1qE4	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr1	139463208	DC1320tail	autochthonous	sgMsh2	139463208	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	77	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon6:c.G2230A:p.E744K	1qE4	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9986432	TGA	nonsynonymous	A	5	AAAAA	NA
DC1320T2	chr1	150419909	DC1320tail	autochthonous	sgMsh2	150419909	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	90	48	0	0	exonic	Tpr	frameshift deletion	Tpr:NM_133780:exon22:c.2904delA:p.N970Mfs*8	1qG1	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.680629019	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr1	160224316	DC1320tail	autochthonous	sgMsh2	160224316	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.077	92	98	3	0.030612245	exonic	Rabgap1l	frameshift deletion	Rabgap1l:NM_001038621:exon9:c.1013delA:p.N338Tfs*7	1qH2.1	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.467932451	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1320T2	chr1	171338508	DC1320tail	autochthonous	sgMsh2	171338508	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	196	77	6	0.077922078	exonic	Dedd	nonsynonymous SNV	"Dedd:NM_001357550:exon2:c.C193T:p.R65C,Dedd:NM_001357551:exon2:c.C193T:p.R65C,Dedd:NM_001357553:exon2:c.C193T:p.R65C,Dedd:NM_011615:exon2:c.C193T:p.R65C,Dedd:NM_001128609:exon3:c.C193T:p.R65C,Dedd:NM_001357552:exon3:c.C193T:p.R65C"	1qH3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.632012661	2	0.9999873	ACG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr1	174369184	DC1320tail	autochthonous	sgMsh2	174369184	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	362	0	0	NA	exonic	Olfr417	nonsynonymous SNV	Olfr417:NM_207137:exon1:c.G266A:p.R89H	1qH3	chr1-4867294-195062457	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.692783109	2	0.9999963	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr10	29196794	DC1320tail	autochthonous	sgMsh2	29196794	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	80	0	0	NA	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon6:c.C2081T:p.A694V	10qA4	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.571242213	2	0.9975314	GCC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr10	62587499	DC1320tail	autochthonous	sgMsh2	62587499	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	199	72	3	0.041666667	exonic	Ddx21	synonymous SNV	Ddx21:NM_019553:exon11:c.G1923A:p.T641T	10qB4	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.230927703	3	2.38E-09	CCG	synonymous	NA	NA	NA	NA
DC1320T2	chr10	69269984	DC1320tail	autochthonous	sgMsh2	69269984	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	141	9	0	0	exonic	Rhobtb1	synonymous SNV	"Rhobtb1:NM_001081347:exon6:c.C564T:p.T188T,Rhobtb1:NM_001252636:exon6:c.C564T:p.T188T,Rhobtb1:NM_001252637:exon6:c.C564T:p.T188T,Rhobtb1:NM_001252638:exon7:c.C204T:p.T68T"	10qB5.3	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.31600633	3	0.9995367	CCA	synonymous	NA	NA	NA	NA
DC1320T2	chr10	80038539	DC1320tail	autochthonous	sgMsh2	80038539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	79	288	2	0.006944444	exonic	Polr2e	frameshift deletion	Polr2e:NM_025554:exon2:c.132delT:p.F44Lfs*59	10qC1	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.571242213	NA	NA	CAA	frameshift	NA	NA	NA	-1
DC1320T2	chr10	82867172	DC1320tail	autochthonous	sgMsh2	82867172	T	-	Deletion	Mutect2;Vardict	2	0.052	156	1	0	0	exonic	Eid3	frameshift deletion	Eid3:NM_025499:exon1:c.466delT:p.F157Lfs*18	10qC1	chr10-4453448-130389076	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.31600633	NA	NA	CTT	frameshift	T	5	TTTTT	-1
DC1320T2	chr11	23444153	DC1320tail	autochthonous	sgMsh2	23444153	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	129	38	7	0.184210526	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon52:c.A6745C:p.T2249P	11qA3.2	chr11-3132249-69579350	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.905479677	1	0.9980359	AAC	nonsynonymous	A	5	AAAAA	NA
DC1320T2	chr11	46528635	DC1320tail	autochthonous	sgMsh2	46528635	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	224	0	0	NA	exonic	Gm12169	nonsynonymous SNV	Gm12169:NM_001163357:exon3:c.T277G:p.L93V	11qB1.1	chr11-3132249-69579350	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.249158837	3	2.20E-09	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr11	47195062	DC1320tail	autochthonous	sgMsh2	47195062	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	258	0	0	NA	exonic	Sgcd	nonsynonymous SNV	Sgcd:NM_011891:exon3:c.C260A:p.P87H	11qB1.1	chr11-3132249-69579350	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.297775196	3	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr11	59549263	DC1320tail	autochthonous	sgMsh2	59549263	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.105	105	3	0	0	exonic	Nlrp3	synonymous SNV	"Nlrp3:NM_145827:exon4:c.C1665T:p.D555D,Nlrp3:NM_001359638:exon5:c.C1665T:p.D555D"	11qB1.3	chr11-3132249-69579350	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.638089706	2	0.9966682	ACG	synonymous	NA	NA	NA	NA
DC1320T2	chr11	96099977	DC1320tail	autochthonous	sgMsh2	96099977	C	T	SNV	Mutect2;Vardict	2	0.047	117	0	0	NA	exonic	Calcoco2	stopgain	Calcoco2:NM_001271018:exon6:c.G933A:p.W311X	11qD	chr11-69590981-121290722	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.285621106	3	0.9997976	CCC	nonsynonymous	G	5	GGGGG	NA
DC1320T2	chr11	115800973	DC1320tail	autochthonous	sgMsh2	115800974	CT	-	Deletion	Strelka2;Vardict	2	0.1406	64	21	5	0.238095238	exonic	Caskin2	frameshift deletion	Caskin2:NM_080643:exon18:c.2984_2985del:p.E995Afs*14	11qE2	chr11-69590981-121290722	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.854432501	NA	NA	GCT	frameshift	CT	9	CTCTCTCTC	-2
DC1320T2	chr12	4865243	DC1320tail	autochthonous	sgMsh2	4865243	C	T	SNV	Mutect2;Vardict	2	0.048	88	1	0	0	exonic	Mfsd2b	nonsynonymous SNV	Mfsd2b:NM_001033488:exon13:c.G1354A:p.G452S	12qA1.1	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.291698151	3	0.9979965	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr12	18514795	DC1320tail	autochthonous	sgMsh2	18514795	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	146	0	0	NA	exonic	5730507C01Rik	nonsynonymous SNV	"5730507C01Rik:NM_001033157:exon1:c.G58A:p.A20T,5730507C01Rik:NM_001201330:exon1:c.G58A:p.A20T"	12qA1.2	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.771784692	2	0.6200154	GGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr12	76438474	DC1320tail	autochthonous	sgMsh2	76438474	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	117	28	0	0	exonic	Ppp1r36	frameshift deletion	Ppp1r36:NM_001163103:exon10:c.970delA:p.K325Sfs*14	12qC3	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr12	88456827	DC1320tail	autochthonous	sgMsh2	88456827	C	T	SNV	Mutect2;Vardict	2	0.085	49	14	0	0	exonic	Adck1	nonsynonymous SNV	"Adck1:NM_001361599:exon7:c.C736T:p.R246C,Adck1:NM_001361601:exon7:c.C562T:p.R188C,Adck1:NM_001361598:exon8:c.C925T:p.R309C,Adck1:NM_001277296:exon9:c.C1099T:p.R367C,Adck1:NM_001277297:exon9:c.C1099T:p.R367C,Adck1:NM_001361600:exon9:c.C721T:p.R241C,Adck1:NM_028105:exon9:c.C1099T:p.R367C"	12qD3	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.516548809	2	0.9290087	GCG	nonsynonymous	CAGC	8	CAGCCAGC	NA
DC1320T2	chr12	103063271	DC1320tail	autochthonous	sgMsh2	103063271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	125	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon14:c.T1691C:p.V564A	12qE	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9999749	GTA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr12	103732433	DC1320tail	autochthonous	sgMsh2	103732433	G	T	SNV	Mutect2;Vardict	2	0.022	377	0	0	NA	exonic	Serpina1b	synonymous SNV	Serpina1b:NM_009244:exon2:c.C156A:p.A52A	12qE	chr12-4774331-118301289	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.133694986	3	1	TGG	synonymous	NA	NA	NA	NA
DC1320T2	chr13	23076328	DC1320tail	autochthonous	sgMsh2	23076328	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	434	0	0	NA	exonic	Vmn1r215	stopgain	Vmn1r215:NM_134219:exon1:c.G537A:p.W179X	13qA3.1	chr13-3885004-119495179	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.595550392	2	1.00E-09	GGA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr13	92777103	DC1320tail	autochthonous	sgMsh2	92777103	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	114	0	0	NA	exonic	Thbs4	nonsynonymous SNV	Thbs4:NM_011582:exon3:c.G308A:p.R103H	13qC3	chr13-3885004-119495179	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.303852241	3	0.9991761	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr14	21014972	DC1320tail	autochthonous	sgMsh2	21014972	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	142	44	4	0.090909091	exonic	Vcl	nonsynonymous SNV	Vcl:NM_009502:exon14:c.A1934C:p.E645A	14qA3	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.577319257	2	0.9999838	GAG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr14	29045609	DC1320tail	autochthonous	sgMsh2	29045609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	118	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon26:c.T2308C:p.Y770H	14qA3	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.966250126	1	0.9997919	TAC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr14	47157409	DC1320tail	autochthonous	sgMsh2	47157409	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	118	57	2	0.035087719	exonic	Gch1	nonsynonymous SNV	Gch1:NM_008102:exon5:c.C599T:p.T200I	14qC1	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.352468599	3	0.982408	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr14	50281941	DC1320tail	autochthonous	sgMsh2	50281941	A	-	Deletion	Strelka2;Vardict	2	0.0896	212	0	0	NA	exonic	Olfr732	frameshift deletion	Olfr732:NM_146665:exon1:c.311delT:p.L104Cfs*13	14qC1	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.544503215	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
DC1320T2	chr14	50486172	DC1320tail	autochthonous	sgMsh2	50486172	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	411	0	0	NA	exonic	Olfr741	frameshift deletion	Olfr741:NM_207133:exon3:c.713delA:p.K240Rfs*11	14qC1	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.875094453	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr14	63138075	DC1320tail	autochthonous	sgMsh2	63138075	A	-	Deletion	Mutect2;Vardict	2	0.043	206	822	2	0.00243309	exonic	Ctsb	frameshift deletion	Ctsb:NM_007798:exon6:c.489delA:p.G166Afs*11	14qD1	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.261312927	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr14	78518874	DC1320tail	autochthonous	sgMsh2	78518874	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	111	15	0	0	exonic	Akap11	nonsynonymous SNV	"Akap11:NM_001346784:exon2:c.G83A:p.R28Q,Akap11:NM_001164503:exon3:c.G83A:p.R28Q"	14qD3	chr14-3072210-123592557	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.589473347	2	0.9996898	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr15	50831677	DC1320tail	autochthonous	sgMsh2	50831677	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	154	0	0	NA	exonic	Trps1	synonymous SNV	"Trps1:NM_001310481:exon3:c.C1221A:p.V407V,Trps1:NM_001310485:exon3:c.C1221A:p.V407V,Trps1:NM_032000:exon3:c.C1209A:p.V403V"	15qC	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.273467017	3	0.9999945	TGA	synonymous	NA	NA	NA	NA
DC1320T2	chr15	71462582	DC1320tail	autochthonous	sgMsh2	71462582	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	219	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon13:c.G2762A:p.S921N	15qD3	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.243081793	3	1.87E-09	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr15	84292838	DC1320tail	autochthonous	sgMsh2	84292838	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	8	1	0.125	exonic	Parvb	nonsynonymous SNV	Parvb:NM_133167:exon6:c.C577T:p.H193Y	15qE2	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	2	0.6617884	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr15	95229166	DC1320tail	autochthonous	sgMsh2	95229166	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	260	0	0	NA	exonic	Nell2	nonsynonymous SNV	"Nell2:NM_001356951:exon19:c.G2327T:p.C776F,Nell2:NM_001289653:exon20:c.G2327T:p.C776F,Nell2:NM_001356950:exon20:c.G2327T:p.C776F"	15qE3	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.650243795	2	0.9999981	GCA	nonsynonymous	CAGG	8	CAGGCAGG	NA
DC1320T2	chr15	100131951	DC1320tail	autochthonous	sgMsh2	100131951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	137	4	0	0	exonic	Dip2b	synonymous SNV	Dip2b:NM_001159361:exon3:c.G222T:p.T74T	15qF1	chr15-3327923-103525164	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.613781526	2	0.9998464	CGG	synonymous	NA	NA	NA	NA
DC1320T2	chr16	19769115	DC1320tail	autochthonous	sgMsh2	19769115	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	172	7	0	0	exonic	B3gnt5	frameshift deletion	"B3gnt5:NM_054052:exon4:c.83delT:p.W30Gfs*8,B3gnt5:NM_001159408:exon5:c.83delT:p.W30Gfs*8,B3gnt5:NM_001159407:exon6:c.83delT:p.W30Gfs*8"	16qA3	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.802169916	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1320T2	chr16	20728791	DC1320tail	autochthonous	sgMsh2	20728791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	61	12	3	0.25	exonic	Thpo	synonymous SNV	"Thpo:NM_001173505:exon3:c.C69T:p.P23P,Thpo:NM_001289894:exon3:c.C69T:p.P23P,Thpo:NM_001289896:exon3:c.C69T:p.P23P,Thpo:NM_009379:exon3:c.C69T:p.P23P"	16qB1	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.704937199	2	0.8400776	CGG	synonymous	NA	NA	NA	NA
DC1320T2	chr16	39024975	DC1320tail	autochthonous	sgMsh2	39024975	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	164	0	0	NA	exonic	Igsf11	nonsynonymous SNV	Igsf11:NM_170599:exon7:c.C1067T:p.A356V	16qB4	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.346391554	3	0.9974608	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr16	43973914	DC1320tail	autochthonous	sgMsh2	43973914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	78	3	0	0	exonic	Zdhhc23	synonymous SNV	"Zdhhc23:NM_001007460:exon3:c.G396A:p.T132T,Zdhhc23:NM_001368703:exon3:c.G396A:p.T132T"	16qB4	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.856863319	1	0.9157426	GCG	synonymous	NA	NA	NA	NA
DC1320T2	chr16	78946704	DC1320tail	autochthonous	sgMsh2	78946704	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	222	0	0	NA	exonic	Chodl	synonymous SNV	"Chodl:NM_001362555:exon5:c.G663A:p.P221P,Chodl:NM_139134:exon5:c.G678A:p.P226P"	16qC3.1	chr16-3948854-96819699	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	8.88E-09	CGC	synonymous	NA	NA	NA	NA
DC1320T2	chr17	14954832	DC1320tail	autochthonous	sgMsh2	14954832	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	137	96	3	0.03125	exonic	Phf10	nonsynonymous SNV	"Phf10:NM_001360983:exon6:c.G650A:p.R217H,Phf10:NM_024250:exon6:c.G650A:p.R217H"	17qA2	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.249158837	3	0.9999971	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	15821056	DC1320tail	autochthonous	sgMsh2	15821056	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	200	17	0	0	exonic	Rgmb	nonsynonymous SNV	"Rgmb:NM_001372292:exon2:c.G268A:p.A90T,Rgmb:NM_178615:exon2:c.G268A:p.A90T,Rgmb:NM_001372259:exon3:c.G268A:p.A90T,Rgmb:NM_001372257:exon4:c.G391A:p.A131T,Rgmb:NM_001372258:exon4:c.G391A:p.A131T,Rgmb:NM_001372256:exon5:c.G391A:p.A131T"	17qA2	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.194465434	3	1.02E-09	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	25585692	DC1320tail	autochthonous	sgMsh2	25585692	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	213	16	1	0.0625	exonic	Lmf1	nonsynonymous SNV	Lmf1:NM_029624:exon2:c.T343G:p.W115G	17qA3.3	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	1.77E-08	GTG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	30717824	DC1320tail	autochthonous	sgMsh2	30717824	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	189	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon34:c.C4599A:p.I1533I	17qA3.3	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9999999	TCA	synonymous	NA	NA	NA	NA
DC1320T2	chr17	46550988	DC1320tail	autochthonous	sgMsh2	46550988	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	48	21	5	0.238095238	exonic	Srf	nonsynonymous SNV	Srf:NM_020493:exon4:c.G1063A:p.A355T	17qC	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.985077	GCC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	57524482	DC1320tail	autochthonous	sgMsh2	57524482	A	-	Deletion	Mutect2;Strelka2	2	0.123	147	0	0	NA	exonic	Vmn2r120	frameshift deletion	"Vmn2r120:NM_001385181:exon3:c.1288delT:p.S430Pfs*8,Vmn2r120:NM_001104591:exon4:c.1306delT:p.S436Pfs*8"	17qD	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.747476512	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr17	58092342	DC1320tail	autochthonous	sgMsh2	58092342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	340	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon8:c.A1189G:p.T397A	17qD	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.419316092	2	0.9206592	AAC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	87707224	DC1320tail	autochthonous	sgMsh2	87707224	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	96	18	1	0.055555556	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon9:c.A1429T:p.N477Y	17qE4	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9997202	TAA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr17	87718632	DC1320tail	autochthonous	sgMsh2	87718666	TCGTCAGACCGGGGTGATTGTACTCATGGCCCAAA	-	Deletion	Strelka2;Vardict	2	0.5227	44	7	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2037_2071del:p.Q681Vfs*5	17qE4	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	3	1	NA	NA	TTC	frameshift	ACAT	8	ACATACAT	-35
DC1320T2	chr17	90565310	DC1320tail	autochthonous	sgMsh2	90565310	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	63	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon13:c.G3188A:p.C1063Y,Nrxn1:NM_177284:exon14:c.G3203A:p.C1068Y,Nrxn1:NM_020252:exon16:c.G3239A:p.C1080Y"	17qE5	chr17-3170973-94834206	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9956669	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr18	12577757	DC1320tail	autochthonous	sgMsh2	12577757	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	100	8	0	0	exonic	Lama3	frameshift deletion	"Lama3:NM_001347461:exon34:c.4530delC:p.Q1512Sfs*7,Lama3:NM_010680:exon71:c.9348delC:p.Q3118Sfs*7"	18qA1	chr18-3423654-89421118	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.711014243	NA	NA	TCC	frameshift	C	5	CCCCC	-1
DC1320T2	chr18	36961792	DC1320tail	autochthonous	sgMsh2	36961792	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	522	0	0	NA	exonic	Pcdha5	synonymous SNV	Pcdha5:NM_009959:exon1:c.C1353T:p.N451N	18qB2	chr18-3423654-89421118	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.188388389	3	1	ACG	synonymous	NA	NA	NA	NA
DC1320T2	chr18	77097537	DC1320tail	autochthonous	sgMsh2	77097538	CC	TT	DBS	Mutect2;Vardict	2	0.046	211	55	1	0.018181818	exonic	Pias2	nonframeshift substitution	"Pias2:NM_001164167:exon2:c.313_314TT:p.P105F,Pias2:NM_001164168:exon2:c.292_293TT:p.P98F,Pias2:NM_001164169:exon2:c.313_314TT:p.P105F,Pias2:NM_001164170:exon2:c.292_293TT:p.P98F,Pias2:NM_008602:exon2:c.313_314TT:p.P105F"	18qE3	chr18-3423654-89421118	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.279544061	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	23136928	DC1320tail	autochthonous	sgMsh2	23136928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	130	10	1	0.1	exonic	Mastl	synonymous SNV	Mastl:NM_025979:exon7:c.C921T:p.F307F	2qA3	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9999834	CGA	synonymous	NA	NA	NA	NA
DC1320T2	chr2	25230678	DC1320tail	autochthonous	sgMsh2	25230678	C	A	SNV	Mutect2;Vardict	2	0.055	76	0	0	NA	exonic	Slc34a3	synonymous SNV	"Slc34a3:NM_080854:exon12:c.G1236T:p.L412L,Slc34a3:NM_001362748:exon13:c.G1056T:p.L352L"	2qA3	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.334237465	3	0.9725046	CCA	synonymous	NA	NA	NA	NA
DC1320T2	chr2	35354548	DC1320tail	autochthonous	sgMsh2	35354548	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	121	0	0	NA	exonic	4930568D16Rik	nonsynonymous SNV	4930568D16Rik:NM_029463:exon6:c.G791T:p.G264V	2qB	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.376776779	3	0.9179827	TCC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	40637799	DC1320tail	autochthonous	sgMsh2	40637799	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	235	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon85:c.G13049A:p.R4350H	2qB	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.309929286	3	0.9999983	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	69483106	DC1320tail	autochthonous	sgMsh2	69483106	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	215	8	2	0.25	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon39:c.A7280T:p.Y2427F	2qC2	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	1.51E-08	ATA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	85976191	DC1320tail	autochthonous	sgMsh2	85976191	G	A	SNV	Mutect2;Vardict	2	0.026	426	0	0	NA	exonic	Olfr1029	nonsynonymous SNV	Olfr1029:NM_001011852:exon1:c.G947A:p.R316H	2qD	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.158003165	3	1	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	85992031	DC1320tail	autochthonous	sgMsh2	85992031	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	194	0	0	NA	exonic	Olfr1031	stopgain	Olfr1031:NM_001011759:exon1:c.C213A:p.C71X	2qD	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.437547227	2	0.9618555	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	90037471	DC1320tail	autochthonous	sgMsh2	90037471	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.045	459	0	0	NA	exonic	Olfr1265	nonsynonymous SNV	Olfr1265:NM_146343:exon1:c.A551C:p.K184T	2qE1	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.273467017	3	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	122320918	DC1320tail	autochthonous	sgMsh2	122320918	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	187	0	0	NA	exonic	Duox1	nonsynonymous SNV	Duox1:NM_001099297:exon8:c.C982A:p.Q328K	2qE5	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.322083375	3	0.9999143	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr2	168756326	DC1320tail	autochthonous	sgMsh2	168756326	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	103	0	0	NA	exonic	Sall4	nonsynonymous SNV	"Sall4:NM_175303:exon2:c.C593T:p.A198V,Sall4:NM_201395:exon2:c.C593T:p.A198V"	2qH3	chr2-4513773-181684255	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.607704482	2	0.9988714	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr3	56005033	DC1320tail	autochthonous	sgMsh2	56005033	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.387	192	4	0	0	exonic	Nbea	frameshift deletion	Nbea:NM_030595:exon22:c.3332delA:p.N1111Tfs*8	3qC	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
DC1320T2	chr3	69575177	DC1320tail	autochthonous	sgMsh2	69575177	C	T	SNV	Mutect2;Vardict	2	0.035	185	2	0	0	exonic	B3galnt1	synonymous SNV	B3galnt1:NM_020026:exon3:c.G750A:p.V250V	3qE1	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.212696569	3	1.80E-09	GCA	synonymous	NA	NA	NA	NA
DC1320T2	chr3	89043536	DC1320tail	autochthonous	sgMsh2	89043536	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	199	16	0	0	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon11:c.C6564A:p.H2188Q	3qF1	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.16408021	3	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr3	103337421	DC1320tail	autochthonous	sgMsh2	103337421	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	104	21	3	0.142857143	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon12:c.G2123A:p.S708N,Trim33:NM_053170:exon12:c.G2123A:p.S708N"	3qF2.2	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.364622689	3	0.9465737	AGT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr3	122748146	DC1320tail	autochthonous	sgMsh2	122748146	C	-	Deletion	Mutect2;Vardict	2	0.042	274	4	0	0	exonic	Pde5a	frameshift deletion	Pde5a:NM_153422:exon2:c.380delC:p.P129Qfs*16	3qG1	chr3-3792373-159911278	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.255235882	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1320T2	chr4	25254904	DC1320tail	autochthonous	sgMsh2	25254904	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	185	32	2	0.0625	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon14:c.A1551G:p.V517V,Ufl1:NM_026194:exon14:c.A1551G:p.V517V"	4qA3	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.267389972	3	0.9999997	GTA	synonymous	NA	NA	NA	NA
DC1320T2	chr4	34028461	DC1320tail	autochthonous	sgMsh2	34028461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	115	0	0	NA	exonic	Spaca1	synonymous SNV	Spaca1:NM_026293:exon7:c.C855T:p.L285L	4qA5	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9999424	CGA	synonymous	NA	NA	NA	NA
DC1320T2	chr4	43024983	DC1320tail	autochthonous	sgMsh2	43024983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	6	2	0.333333333	exonic	Pigo	nonsynonymous SNV	"Pigo:NM_020035:exon1:c.A115G:p.T39A,Pigo:NM_001305386:exon2:c.A91G:p.T31A,Pigo:NM_001305387:exon2:c.A91G:p.T31A"	4qA5	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9989425	GTG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr4	43770239	DC1320tail	autochthonous	sgMsh2	43770239	C	G	SNV	Mutect2;Vardict	2	0.038	279	0	0	NA	exonic	Olfr159	synonymous SNV	Olfr159:NM_019476:exon1:c.G771C:p.L257L	4qB1	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.230927703	3	1.00E-09	ACA	synonymous	NA	NA	NA	NA
DC1320T2	chr4	53062405	DC1320tail	autochthonous	sgMsh2	53062405	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	26	2	0	0	exonic	Abca1	frameshift deletion	Abca1:NM_013454:exon31:c.4449delG:p.L1484Cfs*16	4qB2	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1320T2	chr4	76133315	DC1320tail	autochthonous	sgMsh2	76133315	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	338	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon8:c.A700T:p.R234X,Ptprd:NM_001368993:exon8:c.A700T:p.R234X,Ptprd:NM_001352628:exon9:c.A712T:p.R238X,Ptprd:NM_001352629:exon9:c.A712T:p.R238X,Ptprd:NM_001352630:exon9:c.A712T:p.R238X,Ptprd:NM_001368991:exon19:c.A730T:p.R244X,Ptprd:NM_011211:exon19:c.A730T:p.R244X"	4qC3	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.255235882	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr4	84957050	DC1320tail	autochthonous	sgMsh2	84957050	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.098	106	6	0	0	exonic	Cntln	frameshift deletion	"Cntln:NM_175275:exon5:c.720delA:p.N242Tfs*16,Cntln:NM_177385:exon5:c.720delA:p.N242Tfs*16"	4qC4	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.595550392	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr4	87227046	DC1320tail	autochthonous	sgMsh2	87227046	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	186	0	0	NA	exonic	Slc24a2	frameshift deletion	"Slc24a2:NM_001110240:exon1:c.770delT:p.F257Sfs*14,Slc24a2:NM_172426:exon2:c.770delT:p.F257Sfs*14"	4qC4	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr4	88827925	DC1320tail	autochthonous	sgMsh2	88827925	A	C	SNV	Mutect2;Vardict	2	0.04	589	0	0	NA	exonic	Ifna6	nonsynonymous SNV	Ifna6:NM_206871:exon1:c.A510C:p.E170D	4qC4	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.243081793	3	1	AAG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr4	118829530	DC1320tail	autochthonous	sgMsh2	118829530	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.078	445	0	0	NA	exonic	Olfr1333	frameshift deletion	Olfr1333:NM_207157:exon1:c.909delT:p.F303Lfs*2	4qD2.1	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.474009496	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr4	123246367	DC1320tail	autochthonous	sgMsh2	123246367	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	53	3	0	0	exonic	Heyl	stopgain	Heyl:NM_013905:exon5:c.C718T:p.R240X	4qD2.2	chr4-3552014-156233518	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.917633767	1	0.9490603	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	25284473	DC1320tail	autochthonous	sgMsh2	25284473	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.3	232	13	2	0.153846154	exonic	Kmt2c	frameshift deletion	Kmt2c:NM_001081383:exon52:c.13467delT:p.F4489Lfs*20	5qA3	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1320T2	chr5	31243834	DC1320tail	autochthonous	sgMsh2	31243834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	131	37	7	0.189189189	exonic	Nrbp1	nonsynonymous SNV	"Nrbp1:NM_001347326:exon2:c.T53C:p.V18A,Nrbp1:NM_147201:exon2:c.T53C:p.V18A"	5qB1	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9999848	GTA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	44541771	DC1320tail	autochthonous	sgMsh2	44541771	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	182	8	0	0	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon3:c.G324T:p.K108N,Ldb2:NM_001286348:exon3:c.G324T:p.K108N,Ldb2:NM_001347349:exon3:c.G324T:p.K108N,Ldb2:NM_001359070:exon3:c.G324T:p.K108N,Ldb2:NM_001359071:exon3:c.G324T:p.K108N,Ldb2:NM_010698:exon3:c.G324T:p.K108N"	5qB3	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	123499514	DC1320tail	autochthonous	sgMsh2	123499514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	104	0	0	NA	exonic	Lrrc43	nonsynonymous SNV	"Lrrc43:NM_001033461:exon5:c.T743C:p.L248P,Lrrc43:NM_001289821:exon5:c.T743C:p.L248P,Lrrc43:NM_001289822:exon5:c.T743C:p.L248P"	5qF	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.83255514	1	0.8948873	CTG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	127360158	DC1320tail	autochthonous	sgMsh2	127360158	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	90	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon2:c.C710A:p.A237D	5qG1.2	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.358545644	3	0.9463216	GCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	142034364	DC1320tail	autochthonous	sgMsh2	142034364	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	145	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon19:c.G2676T:p.W892C	5qG2	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.291698151	3	0.9999505	GGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr5	143517192	DC1320tail	autochthonous	sgMsh2	143517192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	199	275	49	0.178181818	exonic	Rac1	nonsynonymous SNV	"Rac1:NM_001347530:exon2:c.A73G:p.T25A,Rac1:NM_009007:exon2:c.A73G:p.T25A"	5qG2	chr5-3673201-150478141	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.741399467	2	0.9555296	GTC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	25688426	DC1320tail	autochthonous	sgMsh2	25688426	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	171	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon1:c.G671A:p.R224H	6qA3.1	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.869017409	1	0.9969639	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	41446058	DC1320tail	autochthonous	sgMsh2	41446058	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	276	0	0	NA	exonic	Gm10334	nonsynonymous SNV	Gm10334:NM_001103153:exon1:c.C8T:p.A3V	6qB1	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.200542479	3	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	48024718	DC1320tail	autochthonous	sgMsh2	48024718	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	59	19	1	0.052631579	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.G2569A:p.E857K,Zfp777:NM_001347139:exon6:c.G2437A:p.E813K"	6qB2.3	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.437547227	2	0.6541469	TCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	57210105	DC1320tail	autochthonous	sgMsh2	57210105	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	452	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.A248C:p.N83T	6qB3	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.16408021	3	1	AAC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	57404917	DC1320tail	autochthonous	sgMsh2	57404917	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.047	440	0	0	NA	exonic	Vmn1r19	nonsynonymous SNV	Vmn1r19:NM_134182:exon1:c.A454T:p.S152C	6qB3	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.285621106	3	1.00E-09	GAG	nonsynonymous	GTGA	8	GTGAGTGA	NA
DC1320T2	chr6	66552884	DC1320tail	autochthonous	sgMsh2	66552884	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	162	0	0	NA	exonic	Vmn1r32	stoploss	Vmn1r32:NM_134170:exon3:c.907delT:p.*303delinsKKGNFLLLKNIYFILMY*	6qC1	chr6-3494310-113068119	6	3	3	0.835	5.074332421	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	T	5	TTTTT	-1
DC1320T2	chr6	113194043	DC1320tail	autochthonous	sgMsh2	113194043	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	50	0	0	NA	exonic	Lhfpl4	nonsynonymous SNV	Lhfpl4:NM_177763:exon2:c.C181A:p.L61I	6qE3	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	1	1	0.9873344	AGG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	124197259	DC1320tail	autochthonous	sgMsh2	124197259	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	368	0	0	NA	exonic	Vmn2r27	nonsynonymous SNV	Vmn2r27:NM_001104642:exon5:c.G1631T:p.C544F	6qF2	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.182311344	3	1	ACA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	124508609	DC1320tail	autochthonous	sgMsh2	124508609	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	270	32	0	0	exonic	C1rl	nonsynonymous SNV	C1rl:NM_181344:exon6:c.C938A:p.P313H	6qF2	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.15192612	3	1	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	126874013	DC1320tail	autochthonous	sgMsh2	126874013	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	50	0	0	NA	exonic	Akap3	synonymous SNV	Akap3:NM_009650:exon6:c.T2493A:p.V831V	6qF3	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9873344	TTC	synonymous	NA	NA	NA	NA
DC1320T2	chr6	137539393	DC1320tail	autochthonous	sgMsh2	137539393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	163	12	0	0	exonic	Eps8	synonymous SNV	Eps8:NM_001271587:exon2:c.C66T:p.G22G	6qG1	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9999989	CGC	synonymous	NA	NA	NA	NA
DC1320T2	chr6	137739798	DC1320tail	autochthonous	sgMsh2	137739798	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	270	254	8	0.031496063	exonic	Strap	nonsynonymous SNV	Strap:NM_011499:exon4:c.G374A:p.R125H	6qG1	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.158003165	3	1	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	143012091	DC1320tail	autochthonous	sgMsh2	143012091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	208	39	4	0.102564103	exonic	C2cd5	nonsynonymous SNV	"C2cd5:NM_001109688:exon25:c.C2890T:p.R964C,C2cd5:NM_001286578:exon25:c.C2374T:p.R792C,C2cd5:NM_029897:exon25:c.C2917T:p.R973C,C2cd5:NM_001362118:exon26:c.C2062T:p.R688C,C2cd5:NM_029081:exon26:c.C2968T:p.R990C,C2cd5:NM_001362114:exon27:c.C3007T:p.R1003C,C2cd5:NM_001362115:exon27:c.C3070T:p.R1024C,C2cd5:NM_001362117:exon27:c.C2974T:p.R992C,C2cd5:NM_001362116:exon28:c.C3040T:p.R1014C,C2cd5:NM_001362113:exon29:c.C3142T:p.R1048C"	6qG3	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.577319257	2	0.9999999	CGA	nonsynonymous	AACA	8	AACAAACA	NA
DC1320T2	chr6	143184685	DC1320tail	autochthonous	sgMsh2	143184685	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	204	26	1	0.038461538	exonic	Etnk1	nonsynonymous SNV	Etnk1:NM_029250:exon3:c.G529A:p.G177R	6qG3	chr6-113104747-145247059	7	4	3	0.835	5.074332421	RARE KARYOTYPE	1	0.322083375	3	0.9999617	CGG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr6	148806507	DC1320tail	autochthonous	sgMsh2	148806507	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	98	30	1	0.033333333	exonic	Ipo8	frameshift deletion	Ipo8:NM_001081113:exon9:c.922delA:p.I308Ffs*1	6qG3	chr6-145397053-149055161	6	3	3	0.835	5.074332421	RARE KARYOTYPE	1	0.875094453	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1320T2	chr6	148928514	DC1320tail	autochthonous	sgMsh2	148928514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	177	3	1	0.333333333	exonic	Sinhcaf	nonsynonymous SNV	"Sinhcaf:NM_001361398:exon3:c.G44A:p.R15H,Sinhcaf:NM_001355645:exon4:c.G350A:p.R117H,Sinhcaf:NM_019643:exon4:c.G350A:p.R117H"	6qG3	chr6-145397053-149055161	6	3	3	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9999997	GCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	6963610	DC1320tail	autochthonous	sgMsh2	6963610	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	222	0	0	NA	exonic	Usp29	synonymous SNV	"Usp29:NM_001360501:exon8:c.C2451T:p.S817S,Usp29:NM_001360502:exon8:c.C2451T:p.S817S,Usp29:NM_021323:exon8:c.C2451T:p.S817S,Usp29:NM_001290994:exon9:c.C2451T:p.S817S"	7qA1	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.370699734	3	0.9918197	GCG	synonymous	NA	NA	NA	NA
DC1320T2	chr7	7384369	DC1320tail	autochthonous	sgMsh2	7384369	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.26	542	0	0	NA	exonic	Vmn2r31	synonymous SNV	"Vmn2r31:NM_001105062:exon6:c.C2202T:p.H734H,Vmn2r31:NM_001385037:exon6:c.C2052T:p.H684H"	7qA1	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	1	TGT	synonymous	ATG	9	ATGATGATG	NA
DC1320T2	chr7	10163011	DC1320tail	autochthonous	sgMsh2	10163011	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	327	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon5:c.G1533A:p.M511I	7qA1	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.237004748	3	1.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	23340512	DC1320tail	autochthonous	sgMsh2	23340512	T	G	SNV	Mutect2;Vardict	2	0.045	195	0	0	NA	exonic	Nlrp4e	nonsynonymous SNV	Nlrp4e:NM_001004194:exon5:c.T2259G:p.N753K	7qA3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.273467017	3	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	26679545	DC1320tail	autochthonous	sgMsh2	26679545	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.12	143	0	0	NA	exonic	Cyp2b23	frameshift deletion	Cyp2b23:NM_001081148:exon4:c.493delC:p.L165Wfs*59	7qA3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.729245378	NA	NA	AGG	frameshift	G	5	GGGGG	-1
DC1320T2	chr7	28182738	DC1320tail	autochthonous	sgMsh2	28182738	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.09	88	27	1	0.037037037	exonic	Dyrk1b	nonsynonymous SNV	"Dyrk1b:NM_001037957:exon4:c.T343A:p.S115T,Dyrk1b:NM_001271370:exon4:c.T523A:p.S175T,Dyrk1b:NM_010092:exon4:c.T343A:p.S115T"	7qA3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.546934033	2	0.9984338	CTC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	28362001	DC1320tail	autochthonous	sgMsh2	28362001	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	69	14	1	0.071428571	exonic	Plekhg2	nonsynonymous SNV	"Plekhg2:NM_001083912:exon18:c.C2373A:p.S791R,Plekhg2:NM_001290542:exon18:c.C2373A:p.S791R,Plekhg2:NM_138752:exon18:c.C2376A:p.S792R"	7qA3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.83255514	1	0.8157311	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	45007437	DC1320tail	autochthonous	sgMsh2	45007437	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	166	51	3	0.058823529	exonic	Scaf1	nonsynonymous SNV	Scaf1:NM_001008422:exon7:c.C2017T:p.R673C	7qB3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.230927703	3	3.85E-08	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	46166011	DC1320tail	autochthonous	sgMsh2	46166011	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	41	0	0	NA	exonic	Abcc8	nonsynonymous SNV	"Abcc8:NM_001357538:exon6:c.A919G:p.I307V,Abcc8:NM_011510:exon6:c.A919G:p.I307V"	7qB3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.771784692	1	0.5012329	ATA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	86335691	DC1320tail	autochthonous	sgMsh2	86335691	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	403	0	0	NA	exonic	Olfr307	nonsynonymous SNV	Olfr307:NM_146617:exon1:c.C704T:p.A235V	7qD3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr7	106753161	DC1320tail	autochthonous	sgMsh2	106753161	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	267	0	0	NA	exonic	Olfr698	nonsynonymous SNV	Olfr698:NM_146602:exon1:c.G226T:p.V76F	7qE3	chr7-4055649-144915099	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	1	1.19E-09	ACT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr8	19749431	DC1320tail	autochthonous	sgMsh2	19749432	CG	AA	DBS	Mutect2;Vardict	2	0.055	135	0	0	NA	exonic	4930467E23Rik	nonframeshift substitution	4930467E23Rik:NM_001039553:exon8:c.894_895AA:p.G299R	8qA1.3	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.334237465	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr8	21839973	DC1320tail	autochthonous	sgMsh2	21839973	C	T	SNV	Mutect2;Vardict	2	0.048	320	0	0	NA	exonic	Defb2	synonymous SNV	Defb2:NM_010030:exon1:c.C15T:p.C5C	8qA2	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.291698151	3	1.57E-09	GCT	synonymous	NA	NA	NA	NA
DC1320T2	chr8	24625828	DC1320tail	autochthonous	sgMsh2	24625828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	185	0	0	NA	exonic	Adam18	stopgain	Adam18:NM_010084:exon17:c.G1849T:p.G617X	8qA2	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	2	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr8	70906054	DC1320tail	autochthonous	sgMsh2	70906054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	12	5	3	0.6	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon1:c.A51G:p.L17L	8qB3.3	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	3	1	1	0.7631675	TAC	synonymous	NA	NA	NA	NA
DC1320T2	chr8	79659410	DC1320tail	autochthonous	sgMsh2	79659410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	239	21	0	0	exonic	Otud4	nonsynonymous SNV	"Otud4:NM_001081164:exon10:c.G815A:p.R272H,Otud4:NM_001256033:exon10:c.G815A:p.R272H"	8qC1	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.182311344	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chr8	80611985	DC1320tail	autochthonous	sgMsh2	80611985	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	104	0	0	NA	exonic	Frem3	synonymous SNV	Frem3:NM_001167898:exon1:c.G906A:p.A302A	8qC2	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	0.31600633	3	0.9969567	CGG	synonymous	NA	NA	NA	NA
DC1320T2	chr8	84258526	DC1320tail	autochthonous	sgMsh2	84258526	G	-	Deletion	Mutect2;Strelka2	2	0.178	80	3	0	0	exonic	Ccdc130	frameshift deletion	Ccdc130:NM_026350:exon10:c.1113delC:p.N372Mfs*62	8qC2	chr8-3194938-127409529	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1320T2	chr9	38524047	DC1320tail	autochthonous	sgMsh2	38524047	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.227	400	0	0	NA	exonic	Olfr911-ps1	frameshift insertion	Olfr911-ps1:NM_146873:exon1:c.315dupT:p.A108Cfs*3	9qA5.1	chr9-3342997-124127224	5	3	2	0.835	5.074332421	RARE KARYOTYPE	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
DC1320T2	chrX	12055112	DC1320tail	autochthonous	sgMsh2	12055113	TC	-	Deletion	Strelka2;Vardict	2	0.1489	47	14	3	0.214285714	exonic	Bcor	frameshift deletion	"Bcor:NM_001168321:exon5:c.3055_3056del:p.E1019Rfs*1,Bcor:NM_175044:exon5:c.3055_3056del:p.E1019Rfs*1,Bcor:NM_175046:exon5:c.3055_3056del:p.E1019Rfs*1,Bcor:NM_029510:exon6:c.3109_3110del:p.E1037Rfs*1,Bcor:NM_175045:exon6:c.3109_3110del:p.E1037Rfs*1"	XqA1.1	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	NA	NA	TTC	frameshift	TC	9	TCTCTCTCT	-2
DC1320T2	chrX	110814569	DC1320tail	autochthonous	sgMsh2	110814569	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	63	0	0	NA	exonic	Pou3f4	nonsynonymous SNV	Pou3f4:NM_008901:exon1:c.G105T:p.Q35H	XqE1	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
DC1320T2	chrX	136457628	DC1320tail	autochthonous	sgMsh2	136457628	C	A	SNV	Mutect2;MuSe;Vardict	3	0.072	176	0	0	NA	exonic	Kir3dl2	nonsynonymous SNV	Kir3dl2:NM_177748:exon3:c.G240T:p.Q80H	XqF1	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
DC1320T2	chrX	153833414	DC1320tail	autochthonous	sgMsh2	153833414	G	C	SNV	Mutect2;Strelka2	2	0.074	129	13	2	0.153846154	exonic	Spin2c	synonymous SNV	Spin2c:NM_001005370:exon2:c.G222C:p.V74V	XqF3	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
DC1320T2	chrX	153833416	DC1320tail	autochthonous	sgMsh2	153833416	C	A	SNV	Mutect2;Strelka2;MuSe	3	0.074	129	10	2	0.2	exonic	Spin2c	nonsynonymous SNV	Spin2c:NM_001005370:exon2:c.C224A:p.P75H	XqF3	NA	NA	NA	NA	0.835	5.074332421	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr1	46233884	DC1638tail	autochthonous	sgMsh2	46233884	A	G	SNV	Mutect2;Vardict	2	0.027	323	2	0	0	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.A7039G:p.R2347G	1qC1.1	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.129076195	3	2.39E-08	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr1	55012237	DC1638tail	autochthonous	sgMsh2	55012237	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	83	281	10	0.035587189	exonic	Sf3b1	synonymous SNV	Sf3b1:NM_031179:exon6:c.A531G:p.K177K	1qC1.2	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.310738988	2	0.6014598	CTT	synonymous	AGCTTT	12	AGCTTTAGCTTT	NA
DC1638T10	chr1	60131855	DC1638tail	autochthonous	sgMsh2	60131855	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	138	4	1	0.25	exonic	Carf	synonymous SNV	"Carf:NM_001285473:exon6:c.T471C:p.D157D,Carf:NM_139150:exon8:c.T576C:p.D192D,Carf:NM_001285463:exon10:c.T219C:p.D73D"	1qC2	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.186443393	3	0.9944121	ATT	synonymous	NA	NA	NA	NA
DC1638T10	chr1	91152394	DC1638tail	autochthonous	sgMsh2	91152394	T	C	SNV	Mutect2;Vardict	2	0.022	247	0	0	NA	exonic	Rbm44	synonymous SNV	Rbm44:NM_001033408:exon3:c.T303C:p.S101S	1qD	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.105173196	3	0.9999999	GTA	synonymous	NA	NA	NA	NA
DC1638T10	chr1	98466674	DC1638tail	autochthonous	sgMsh2	98466674	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	166	0	0	NA	exonic	Slco6d1	nonsynonymous SNV	"Slco6d1:NM_001164233:exon7:c.C1082A:p.P361Q,Slco6d1:NM_027584:exon7:c.C1082A:p.P361Q"	1qD	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.181662793	3	0.9980986	CCA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr1	160247466	DC1638tail	autochthonous	sgMsh2	160247466	A	T	SNV	Mutect2;Vardict	2	0.025	293	41	1	0.024390244	exonic	Rabgap1l	stopgain	Rabgap1l:NM_001038621:exon4:c.T494A:p.L165X	1qH2.1	chr1-6770919-195062457	4	2	2	0.835	3.991800846	NA	1	0.119514995	3	3.50E-08	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr10	5110971	DC1638tail	autochthonous	sgMsh2	5110971	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	88	3	0	0	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001079686:exon28:c.T4369A:p.W1457R,Syne1:NM_001347711:exon118:c.T21703A:p.W7235R,Syne1:NM_001347732:exon118:c.T21667A:p.W7223R"	10qA1	chr10-3120209-130453386	3	2	1	0.835	3.991800846	NA	1	0.406350984	2	0.9792205	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr10	83600937	DC1638tail	autochthonous	sgMsh2	83600937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	125	154	6	0.038961039	exonic	Appl2	synonymous SNV	Appl2:NM_145220:exon21:c.T1959C:p.S653S	10qC1	chr10-3120209-130453386	3	2	1	0.835	3.991800846	NA	1	0.487621181	2	0.9999581	CAC	synonymous	NA	NA	NA	NA
DC1638T10	chr10	117781379	DC1638tail	autochthonous	sgMsh2	117781379	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	105	20	0	0	exonic	Nup107	nonsynonymous SNV	Nup107:NM_134010:exon7:c.A625G:p.M209V	10qD2	chr10-3120209-130453386	3	2	1	0.835	3.991800846	NA	1	0.305958388	2	0.6665759	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr10	129874309	DC1638tail	autochthonous	sgMsh2	129874309	A	G	SNV	Mutect2;Vardict	2	0.038	160	0	0	NA	exonic	Olfr814	synonymous SNV	Olfr814:NM_207159:exon1:c.T447C:p.T149T	10qD3	chr10-3120209-130453386	3	2	1	0.835	3.991800846	NA	1	0.181662793	3	0.9977339	CAG	synonymous	NA	NA	NA	NA
DC1638T10	chr11	3495370	DC1638tail	autochthonous	sgMsh2	3495370	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	191	7	0	0	exonic	Inpp5j	nonsynonymous SNV	Inpp5j:NM_172439:exon12:c.A2482G:p.I828V	11qA1	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.200785192	3	0.9961249	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	3863264	DC1638tail	autochthonous	sgMsh2	3863264	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	100	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon1:c.G604A:p.V202M,Osbp2:NM_152818:exon1:c.G604A:p.V202M"	11qA1	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	1	1	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	6624121	DC1638tail	autochthonous	sgMsh2	6624121	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	64	50	12	0.24	exonic	Tbrg4	nonsynonymous SNV	"Tbrg4:NM_001130457:exon3:c.G100T:p.V34L,Tbrg4:NM_001362713:exon3:c.G100T:p.V34L,Tbrg4:NM_001362714:exon3:c.G100T:p.V34L,Tbrg4:NM_134011:exon3:c.G100T:p.V34L"	11qA1	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	1	1	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	26468679	DC1638tail	autochthonous	sgMsh2	26468679	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	262	25	0	0	exonic	Fancl	synonymous SNV	"Fancl:NM_001277273:exon10:c.A783G:p.K261K,Fancl:NM_025923:exon10:c.A783G:p.K261K"	11qA3.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.172101593	3	0.9999576	AAC	synonymous	NA	NA	NA	NA
DC1638T10	chr11	50929467	DC1638tail	autochthonous	sgMsh2	50929467	T	C	SNV	Mutect2;Vardict	2	0.057	173	0	0	NA	exonic	Zfp354b	nonsynonymous SNV	Zfp354b:NM_013744:exon3:c.A70G:p.T24A	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.272494189	3	0.5609888	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	59020542	DC1638tail	autochthonous	sgMsh2	59020542	A	T	SNV	Mutect2;Vardict	2	0.054	74	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon81:c.T19263A:p.R6421R,Obscn:NM_199152:exon88:c.T21222A:p.R7074R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.25815239	3	0.7901658	CAC	synonymous	CCA	10	CCACCACCAC	NA
DC1638T10	chr11	59589898	DC1638tail	autochthonous	sgMsh2	59589898	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	126	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.T190C:p.Y64H	11qB1.3	chr11-3133205-69579350	4	2	2	0.835	3.991800846	NA	1	0.286835989	2	0.5391536	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	73940994	DC1638tail	autochthonous	sgMsh2	73940994	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	305	0	0	NA	exonic	Olfr23	synonymous SNV	Olfr23:NM_010970:exon1:c.A747G:p.S249S	11qB4	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.157759794	3	0.9999982	CAC	synonymous	NA	NA	NA	NA
DC1638T10	chr11	73965486	DC1638tail	autochthonous	sgMsh2	73965486	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	121	0	0	NA	exonic	Olfr397	nonsynonymous SNV	Olfr397:NM_146346:exon1:c.A877G:p.R293G	11qB4	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.325080787	2	0.8730129	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	77829764	DC1638tail	autochthonous	sgMsh2	77829764	G	A	SNV	Mutect2;Vardict	2	0.06	69	47	4	0.085106383	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon17:c.G2215A:p.D739N,Myo18a:NM_011586:exon18:c.G3220A:p.D1074N,Myo18a:NM_001291212:exon19:c.G3256A:p.D1086N,Myo18a:NM_001291213:exon19:c.G3364A:p.D1122N,Myo18a:NM_001291215:exon20:c.G2281A:p.D761N"	11qB5	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.286835989	3	0.6334551	AGA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	99012043	DC1638tail	autochthonous	sgMsh2	99012043	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	280	46	2	0.043478261	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon11:c.A1317G:p.K439K	11qD	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.148198594	3	0.9999984	GTT	synonymous	NA	NA	NA	NA
DC1638T10	chr11	101283779	DC1638tail	autochthonous	sgMsh2	101283779	A	C	SNV	Mutect2;Vardict	2	0.054	77	1	0	0	exonic	Cntd1	nonsynonymous SNV	Cntd1:NM_026562:exon3:c.A310C:p.K104Q	11qD	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.25815239	3	0.7896722	TAA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	105139663	DC1638tail	autochthonous	sgMsh2	105139663	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	114	62	0	0	exonic	Mettl2	nonsynonymous SNV	Mettl2:NM_172567:exon9:c.G1064A:p.R355H	11qE1	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.191223993	3	0.9867174	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	107492045	DC1638tail	autochthonous	sgMsh2	107492045	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	124	576	44	0.076388889	exonic	Psmd12	nonsynonymous SNV	Psmd12:NM_025894:exon7:c.T689C:p.M230T	11qE1	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.320300188	2	0.8551516	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	109976543	DC1638tail	autochthonous	sgMsh2	109976543	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	183	1	0	0	exonic	Abca8b	nonsynonymous SNV	"Abca8b:NM_001362749:exon6:c.A688G:p.I230V,Abca8b:NM_013851:exon6:c.A688G:p.I230V"	11qE1	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.25337179	3	0.8269749	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr11	115879751	DC1638tail	autochthonous	sgMsh2	115879751	A	C	SNV	Mutect2;Vardict	2	0.05	80	6	2	0.333333333	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon27:c.A4663C:p.M1555L	11qE2	chr11-69600961-121956809	4	2	2	0.835	3.991800846	NA	1	0.239029991	3	0.8727863	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr12	73043768	DC1638tail	autochthonous	sgMsh2	73043768	C	T	SNV	Mutect2;Vardict	2	0.034	129	0	0	NA	exonic	Six1	nonsynonymous SNV	Six1:NM_009189:exon2:c.G622A:p.G208R	12qC3	chr12-3235624-119465464	4	2	2	0.835	3.991800846	NA	1	0.162540394	3	0.9978838	CCT	nonsynonymous	C	5	CCCCC	NA
DC1638T10	chr12	76427898	DC1638tail	autochthonous	sgMsh2	76427898	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	228	11	0	0	exonic	Ppp1r36	nonsynonymous SNV	Ppp1r36:NM_001163103:exon4:c.A253G:p.R85G	12qC3	chr12-3235624-119465464	4	2	2	0.835	3.991800846	NA	1	0.167320994	3	0.9999152	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr12	104265616	DC1638tail	autochthonous	sgMsh2	104265616	T	C	SNV	Mutect2;Vardict	2	0.019	399	0	0	NA	exonic	Serpina3i	nonsynonymous SNV	Serpina3i:NM_001199940:exon3:c.T511C:p.Y171H	12qE	chr12-3235624-119465464	4	2	2	0.835	3.991800846	NA	1	0.090831396	3	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr12	104722244	DC1638tail	autochthonous	sgMsh2	104722244	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	289	48	1	0.020833333	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon8:c.T1073C:p.L358P	12qE	chr12-3235624-119465464	4	2	2	0.835	3.991800846	NA	1	0.124295595	3	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr12	113144266	DC1638tail	autochthonous	sgMsh2	113144266	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	228	626	173	0.276357827	exonic	Crip2	nonsynonymous SNV	"Crip2:NM_001347443:exon4:c.G3A:p.M1I,Crip2:NM_024223:exon4:c.G375A:p.M125I"	12qF1	chr12-3235624-119465464	4	2	2	0.835	3.991800846	NA	1	1	1	1	TGT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	14306025	DC1638tail	autochthonous	sgMsh2	14306025	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	140	0	0	NA	exonic	Hecw1	synonymous SNV	Hecw1:NM_001081348:exon13:c.A2736T:p.G912G	13qA1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.353764386	2	0.982718	CTC	synonymous	"CCA, TCC"	"11, 12"	"CCACCACCACC, TCCTCCTCCTCC"	NA
DC1638T10	chr13	27851681	DC1638tail	autochthonous	sgMsh2	27851681	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	388	0	0	NA	exonic	Prl2c1	nonsynonymous SNV	"Prl2c1:NM_001045532:exon2:c.T35C:p.I12T,Prl2c1:NM_001361045:exon2:c.T35C:p.I12T"	13qA3.1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.176882193	3	0.9999986	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	33327925	DC1638tail	autochthonous	sgMsh2	33327925	T	C	SNV	Mutect2;Vardict	2	0.021	326	0	0	NA	exonic	Serpinb9f	nonsynonymous SNV	Serpinb9f:NM_183197:exon4:c.T410C:p.V137A	13qA3.3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.100392596	3	1.49E-09	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	59727601	DC1638tail	autochthonous	sgMsh2	59727601	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	209	0	0	NA	exonic	Spata31d1d	nonsynonymous SNV	Spata31d1d:NM_177711:exon4:c.A2119G:p.T707A	13qB2	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.172101593	3	0.9997551	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	60729419	DC1638tail	autochthonous	sgMsh2	60729419	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	156	32	0	0	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon16:c.T1471C:p.Y491H,Dapk1:NM_029653:exon16:c.T1471C:p.Y491H,Dapk1:NM_134062:exon16:c.T1471C:p.Y491H"	13qB2	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.210346392	3	0.9851988	TTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	65199182	DC1638tail	autochthonous	sgMsh2	65199182	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	318	0	0	NA	exonic	Nlrp4f	synonymous SNV	Nlrp4f:NM_175290:exon2:c.A261G:p.T87T	13qB3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.181662793	3	0.9999778	CTG	synonymous	NA	NA	NA	NA
DC1638T10	chr13	81523776	DC1638tail	autochthonous	sgMsh2	81523776	A	-	Deletion	Mutect2;Vardict	2	0.062	102	0	0	NA	exonic	Adgrv1	frameshift deletion	Adgrv1:NM_054053:exon31:c.6699delT:p.Q2234Rfs*5	13qC3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.296397189	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T10	chr13	89705306	DC1638tail	autochthonous	sgMsh2	89705306	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.022	365	1	0	0	exonic	Vcan	nonsynonymous SNV	"Vcan:NM_001081249:exon7:c.A1534G:p.I512V,Vcan:NM_001134474:exon7:c.A1534G:p.I512V"	13qC3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.105173196	3	1.09E-09	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	93096284	DC1638tail	autochthonous	sgMsh2	93096284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	203	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.G2295A:p.K765K	13qC3	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.903533365	1	1	GCT	synonymous	NA	NA	NA	NA
DC1638T10	chr13	95049965	DC1638tail	autochthonous	sgMsh2	95049965	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	190	21	0	0	exonic	Pde8b	nonsynonymous SNV	"Pde8b:NM_001170669:exon9:c.T958C:p.S320P,Pde8b:NM_001374005:exon9:c.T646C:p.S216P,Pde8b:NM_001374006:exon9:c.T643C:p.S215P,Pde8b:NM_172263:exon10:c.T784C:p.S262P,Pde8b:NM_001346782:exon12:c.T934C:p.S312P,Pde8b:NM_001374003:exon12:c.T1249C:p.S417P,Pde8b:NM_001374004:exon12:c.T1246C:p.S416P,Pde8b:NM_001374007:exon12:c.T937C:p.S313P"	13qD1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.196004592	3	0.9972332	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr13	101757461	DC1638tail	autochthonous	sgMsh2	101757461	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	134	51	2	0.039215686	exonic	Pik3r1	nonsynonymous SNV	Pik3r1:NM_001077495:exon2:c.G199A:p.G67R	13qD1	chr13-3554284-119495179	4	2	2	0.835	3.991800846	NA	1	0.191223993	3	0.9919836	CCC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	18284411	DC1638tail	autochthonous	sgMsh2	18284411	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	199	426	13	0.030516432	exonic	Ube2e1	nonsynonymous SNV	Ube2e1:NM_009455:exon5:c.G347A:p.R116H	14qA2	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.162540394	3	0.9998395	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	50186734	DC1638tail	autochthonous	sgMsh2	50186734	A	G	SNV	Mutect2;Vardict	2	0.02	325	0	0	NA	exonic	Olfr730	nonsynonymous SNV	Olfr730:NM_146493:exon1:c.T485C:p.I162T	14qC1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.095611996	3	1.28E-09	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	52490757	DC1638tail	autochthonous	sgMsh2	52490757	A	T	SNV	Mutect2;Vardict	2	0.037	360	0	0	NA	exonic	Olfr1507	nonsynonymous SNV	"Olfr1507:NM_020512:exon1:c.T206A:p.L69Q,Olfr1507:NM_001170918:exon2:c.T206A:p.L69Q"	14qC2	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.176882193	3	0.9999967	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	60035263	DC1638tail	autochthonous	sgMsh2	60035263	A	G	SNV	Mutect2;Vardict	2	0.062	84	0	0	NA	exonic	Atp8a2	nonsynonymous SNV	Atp8a2:NM_015803:exon8:c.T581C:p.L194P	14qD1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.296397189	3	0.510932	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	61607689	DC1638tail	autochthonous	sgMsh2	61607689	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	272	2	0	0	exonic	Kcnrg	synonymous SNV	"Kcnrg:NM_001039105:exon1:c.T177C:p.S59S,Kcnrg:NM_206974:exon1:c.T177C:p.S59S"	14qD1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.234249391	3	0.9759784	GTT	synonymous	NA	NA	NA	NA
DC1638T10	chr14	76111931	DC1638tail	autochthonous	sgMsh2	76111931	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	142	91	5	0.054945055	exonic	Nufip1	nonsynonymous SNV	Nufip1:NM_013745:exon2:c.T402A:p.H134Q	14qD3	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.411131584	2	0.9993543	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr14	88468645	DC1638tail	autochthonous	sgMsh2	88468645	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	256	0	0	NA	exonic	Pcdh20	synonymous SNV	Pcdh20:NM_178685:exon3:c.T1218C:p.C406C	14qE1	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.143417994	3	0.9999972	TAC	synonymous	NA	NA	NA	NA
DC1638T10	chr14	122123721	DC1638tail	autochthonous	sgMsh2	122123721	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	272	299	8	0.026755853	exonic	Tm9sf2	synonymous SNV	Tm9sf2:NM_080556:exon2:c.T174C:p.D58D	14qE5	chr14-3072210-123348696	4	2	2	0.835	3.991800846	NA	1	0.167320994	3	0.9999818	ATA	synonymous	NA	NA	NA	NA
DC1638T10	chr15	5176920	DC1638tail	autochthonous	sgMsh2	5176920	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	247	147	4	0.027210884	exonic	Prkaa1	nonsynonymous SNV	"Prkaa1:NM_001355640:exon6:c.A824T:p.D275V,Prkaa1:NM_001013367:exon7:c.A1256T:p.D419V"	15qA1	chr15-3341105-103439122	4	2	2	0.835	3.991800846	NA	1	0.272494189	2	0.5618044	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr15	25964321	DC1638tail	autochthonous	sgMsh2	25964321	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	242	84	1	0.011904762	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T133A:p.S45T,Retreg1:NM_001277316:exon2:c.T157A:p.S53T,Retreg1:NM_001277317:exon2:c.T103A:p.S35T,Retreg1:NM_001277318:exon2:c.T31A:p.S11T,Retreg1:NM_025459:exon3:c.T133A:p.S45T,Retreg1:NM_001034851:exon4:c.T505A:p.S169T"	15qB1	chr15-3341105-103439122	4	2	2	0.835	3.991800846	NA	1	0.191223993	3	0.9994865	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr15	75669402	DC1638tail	autochthonous	sgMsh2	75669402	T	-	Deletion	Mutect2;Vardict	2	0.05	128	32	0	0	exonic	Top1mt	stopgain	"Top1mt:NM_001355589:exon5:c.532delA:p.I178fs*0,Top1mt:NM_028404:exon5:c.535delA:p.I179fs*0"	15qD3	chr15-3341105-103439122	4	2	2	0.835	3.991800846	NA	1	0.239029991	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
DC1638T10	chr16	58889297	DC1638tail	autochthonous	sgMsh2	58889297	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	121	0	0	NA	exonic	Olfr178	nonsynonymous SNV	Olfr178:NM_146997:exon1:c.A922G:p.T308A	16qC1.2	chr16-4689845-96161947	4	2	2	0.835	3.991800846	NA	1	0.339422587	2	0.9318285	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr16	88759428	DC1638tail	autochthonous	sgMsh2	88759428	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	289	0	0	NA	exonic	2310034C09Rik	nonsynonymous SNV	2310034C09Rik:NM_054100:exon1:c.T529C:p.F177L	16qC3.3	chr16-4689845-96161947	4	2	2	0.835	3.991800846	NA	1	0.124295595	3	0.9999999	CTT	nonsynonymous	CTTCC	10	CTTCCCTTCC	NA
DC1638T10	chr17	3450241	DC1638tail	autochthonous	sgMsh2	3450241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	255	55	7	0.127272727	exonic	Tiam2	synonymous SNV	"Tiam2:NM_001122998:exon11:c.T2596C:p.L866L,Tiam2:NM_011878:exon11:c.T2596C:p.L866L"	17qA1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.191223993	3	0.9996314	GTT	synonymous	NA	NA	NA	NA
DC1638T10	chr17	5243065	DC1638tail	autochthonous	sgMsh2	5243065	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	46	25	2	0.08	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon5:c.A2101G:p.I701V	17qA1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.568891378	2	0.955194	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	20472151	DC1638tail	autochthonous	sgMsh2	20472151	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	223	0	0	NA	exonic	Vmn2r108	nonsynonymous SNV	Vmn2r108:NM_001104570:exon2:c.A442G:p.T148A	17qA3.2	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.114734396	3	0.999999	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	36165868	DC1638tail	autochthonous	sgMsh2	36165868	G	-	Deletion	Mutect2;Vardict	2	0.052	244	0	0	NA	exonic	Gm8909	frameshift deletion	Gm8909:NM_001081032:exon4:c.629delC:p.P210Qfs*4	17qB1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.24859119	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1638T10	chr17	37151930	DC1638tail	autochthonous	sgMsh2	37151930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	260	0	0	NA	exonic	Olfr93	nonsynonymous SNV	Olfr93:NM_001011813:exon1:c.G41A:p.G14D	17qB1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	1	1	1	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	37659803	DC1638tail	autochthonous	sgMsh2	37659803	T	G	SNV	Mutect2;MuSe;Vardict	3	0.066	303	0	0	NA	exonic	Olfr117	nonsynonymous SNV	Olfr117:NM_207155:exon1:c.A529C:p.I177L	17qB1	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.315519588	2	0.9969362	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	44879954	DC1638tail	autochthonous	sgMsh2	44879954	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	224	0	0	NA	exonic	4930564C03Rik	nonsynonymous SNV	4930564C03Rik:NM_029257:exon1:c.A335G:p.K112R	17qB3	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.239029991	3	0.9465255	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	57509009	DC1638tail	autochthonous	sgMsh2	57509009	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	292	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon6:c.A2327G:p.K776R,Vmn2r120:NM_001104591:exon7:c.A2345G:p.K782R"	17qD	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.210346392	3	0.9986923	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	81408203	DC1638tail	autochthonous	sgMsh2	81408203	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	132	10	0	0	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon8:c.C2364G:p.C788W,Slc8a1:NM_001286684:exon10:c.C2400G:p.C800W,Slc8a1:NM_011406:exon10:c.C2400G:p.C800W"	17qE3	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	1	0.219907592	3	0.9633046	AGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr17	87718638	DC1638tail	autochthonous	sgMsh2	87718638	-	A	Insertion	Strelka2;Vardict	2	0.3929	84	15	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077483-90208269	4	2	2	0.835	3.991800846	NA	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
DC1638T10	chr18	36691463	DC1638tail	autochthonous	sgMsh2	36691463	T	A	SNV	Mutect2;Vardict	2	0.103	41	1	0	0	exonic	E230025N22Rik	synonymous SNV	E230025N22Rik:NM_172831:exon6:c.A444T:p.V148V	18qB2	chr18-6333071-88974479	4	3	1	0.835	3.991800846	NA	1	0.492401781	2	0.9167651	GTA	synonymous	NA	NA	NA	NA
DC1638T10	chr19	10659624	DC1638tail	autochthonous	sgMsh2	10659624	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	288	1	1	1	exonic	Vwce	nonsynonymous SNV	Vwce:NM_027913:exon18:c.A2069T:p.Q690L	19qA	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.239029991	3	0.9642508	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr19	13453704	DC1638tail	autochthonous	sgMsh2	13453704	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	312	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T812G:p.I271S	19qA	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.167320994	3	0.9999955	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr19	27800176	DC1638tail	autochthonous	sgMsh2	27800176	T	A	SNV	Mutect2;Vardict	2	0.032	172	4	0	0	exonic	Rfx3	nonsynonymous SNV	"Rfx3:NM_001360357:exon13:c.A1576T:p.T526S,Rfx3:NM_011265:exon13:c.A1546T:p.T516S,Rfx3:NM_001360358:exon14:c.A1669T:p.T557S,Rfx3:NM_001166414:exon15:c.A1546T:p.T516S"	19qC1	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.152979194	3	0.9997736	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr19	57385327	DC1638tail	autochthonous	sgMsh2	57385327	A	T	SNV	Mutect2;Vardict	2	0.052	83	69	3	0.043478261	exonic	Fam160b1	nonsynonymous SNV	Fam160b1:NM_145505:exon15:c.A2018T:p.E673V	19qD2	chr19-3804329-61225035	4	2	2	0.835	3.991800846	NA	1	0.24859119	3	0.8363456	GAG	nonsynonymous	CACG	8	CACGCACG	NA
DC1638T10	chr2	29949195	DC1638tail	autochthonous	sgMsh2	29949195	G	A	SNV	Mutect2;Vardict	2	0.036	112	89	0	0	exonic	Gle1	nonsynonymous SNV	Gle1:NM_028923:exon11:c.G1498A:p.A500T	2qB	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.172101593	3	0.9939707	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	34779489	DC1638tail	autochthonous	sgMsh2	34779489	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	182	78	3	0.038461538	exonic	Rabepk	synonymous SNV	"Rabepk:NM_001374669:exon8:c.A867G:p.L289L,Rabepk:NM_145522:exon8:c.A891G:p.L297L"	2qB	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.205565792	3	0.9933679	GTA	synonymous	NA	NA	NA	NA
DC1638T10	chr2	40903085	DC1638tail	autochthonous	sgMsh2	40903085	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	216	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon49:c.T7918C:p.S2640P	2qB	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.26771359	3	0.5907975	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	75661978	DC1638tail	autochthonous	sgMsh2	75661978	T	C	SNV	Mutect2;Vardict	2	0.045	138	12	0	0	exonic	Hnrnpa3	nonsynonymous SNV	"Hnrnpa3:NM_001359971:exon4:c.T359C:p.L120P,Hnrnpa3:NM_053263:exon4:c.T359C:p.L120P,Hnrnpa3:NM_146130:exon4:c.T425C:p.L142P,Hnrnpa3:NM_198090:exon4:c.T425C:p.L142P"	2qC3	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.215126992	3	0.973761	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	85196323	DC1638tail	autochthonous	sgMsh2	85196323	G	-	Deletion	Mutect2;Vardict	2	0.049	147	0	0	NA	exonic	Lrrc55	frameshift deletion	Lrrc55:NM_001033346:exon2:c.317delC:p.P106Lfs*9	2qD	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.234249391	NA	NA	AGG	frameshift	G	5	GGGGG	-1
DC1638T10	chr2	85904211	DC1638tail	autochthonous	sgMsh2	85904211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	163	0	0	NA	exonic	Olfr1024	nonsynonymous SNV	Olfr1024:NM_001005230:exon1:c.T842C:p.V281A	2qD	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	87490943	DC1638tail	autochthonous	sgMsh2	87490943	A	G	SNV	Mutect2;Vardict	2	0.024	275	0	0	NA	exonic	Pramel7	synonymous SNV	Pramel7:NM_178250:exon2:c.T747C:p.T249T	2qD	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.114734396	3	0.9999999	GAG	synonymous	NA	NA	NA	NA
DC1638T10	chr2	111664354	DC1638tail	autochthonous	sgMsh2	111664354	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	338	0	0	NA	exonic	Olfr1299	nonsynonymous SNV	Olfr1299:NM_146884:exon2:c.A127C:p.I43L	2qE3	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.148198594	3	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	119139420	DC1638tail	autochthonous	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.1989	181	38	0	0	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-4925576-137100395	4	2	2	0.835	3.991800846	NA	1	0.950861303	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
DC1638T10	chr2	155572934	DC1638tail	autochthonous	sgMsh2	155572934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	243	232	7	0.030172414	exonic	Gss	nonsynonymous SNV	"Gss:NM_001291111:exon7:c.A550G:p.R184G,Gss:NM_008180:exon8:c.A757G:p.R253G"	2qH1	chr2-137101279-181511691	4	3	1	0.835	3.991800846	NA	1	0.129076195	3	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	156874919	DC1638tail	autochthonous	sgMsh2	156874919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	180	1	0	0	exonic	Sla2	nonsynonymous SNV	"Sla2:NM_001356495:exon7:c.T620C:p.V207A,Sla2:NM_029983:exon7:c.T620C:p.V207A"	2qH1	chr2-137101279-181511691	4	3	1	0.835	3.991800846	NA	1	0.602355577	2	0.9980896	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr2	181236454	DC1638tail	autochthonous	sgMsh2	181236454	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	163	5	0	0	exonic	Helz2	nonsynonymous SNV	Helz2:NM_183162:exon7:c.G2550C:p.M850I	2qH4	chr2-137101279-181511691	4	3	1	0.835	3.991800846	NA	1	0.196004592	3	0.9947774	ACA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr3	30936990	DC1638tail	autochthonous	sgMsh2	30936990	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	203	2	1	0.5	exonic	Phc3	synonymous SNV	"Phc3:NM_001165955:exon7:c.G942A:p.Q314Q,Phc3:NM_001165954:exon8:c.G1077A:p.Q359Q,Phc3:NM_001165956:exon8:c.G1077A:p.Q359Q,Phc3:NM_153421:exon8:c.G1041A:p.Q347Q"	3qA3	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	1	1	1	GCT	synonymous	NA	NA	NA	NA
DC1638T10	chr3	36967115	DC1638tail	autochthonous	sgMsh2	36967115	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	299	3	0	0	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon41:c.T6384A:p.D2128E	3qB	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	0.162540394	3	0.999996	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr3	53017090	DC1638tail	autochthonous	sgMsh2	53017090	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	79	36	0	0	exonic	Cog6	nonsynonymous SNV	Cog6:NM_026225:exon1:c.C109T:p.R37C	3qC	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	0.26771359	3	0.7353292	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr3	59838400	DC1638tail	autochthonous	sgMsh2	59838400	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	181	0	0	NA	exonic	Gm16527	nonsynonymous SNV	Gm16527:NM_001370866:exon2:c.T265C:p.Y89H	3qD	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	0.25815239	3	0.7720375	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr3	108654344	DC1638tail	autochthonous	sgMsh2	108654344	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	115	2	0	0	exonic	Clcc1	nonsynonymous SNV	Clcc1:NM_001177770:exon1:c.T2C:p.M1T	3qF3	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	0.282055389	3	0.5490048	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr3	142781528	DC1638tail	autochthonous	sgMsh2	142781528	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	109	174	46	0.264367816	exonic	Gtf2b	synonymous SNV	Gtf2b:NM_145546:exon6:c.C724T:p.L242L	3qH1	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	1	1	1.00E-09	GCT	synonymous	NA	NA	NA	NA
DC1638T10	chr3	152714136	DC1638tail	autochthonous	sgMsh2	152714136	T	C	SNV	Mutect2;Vardict	2	0.114	35	39	0	0	exonic	Pigk	nonsynonymous SNV	"Pigk:NM_025662:exon1:c.T2C:p.M1T,Pigk:NM_178016:exon1:c.T2C:p.M1T"	3qH3	chr3-3642831-159911278	4	2	2	0.835	3.991800846	NA	1	0.544988379	2	0.9041304	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr4	84292760	DC1638tail	autochthonous	sgMsh2	84292760	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	172	0	0	NA	exonic	Bnc2	synonymous SNV	"Bnc2:NM_001369082:exon5:c.T1392C:p.S464S,Bnc2:NM_172870:exon5:c.T1371C:p.S457S,Bnc2:NM_001369081:exon6:c.T1593C:p.S531S,Bnc2:NM_001369083:exon6:c.T1572C:p.S524S,Bnc2:NM_001369084:exon6:c.T1338C:p.S446S"	4qC4	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.219907592	3	0.9788329	TAC	synonymous	NA	NA	NA	NA
DC1638T10	chr4	88435049	DC1638tail	autochthonous	sgMsh2	88435049	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	351	12	0	0	exonic	Hacd4	nonsynonymous SNV	"Hacd4:NM_001377100:exon2:c.T13C:p.F5L,Hacd4:NM_001377098:exon3:c.T160C:p.F54L,Hacd4:NM_001377099:exon3:c.T160C:p.F54L,Hacd4:NM_025760:exon3:c.T160C:p.F54L"	4qC4	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.167320994	3	0.9999989	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr4	115331951	DC1638tail	autochthonous	sgMsh2	115331951	T	G	SNV	Mutect2;Vardict	2	0.04	341	0	0	NA	exonic	Cyp4a12a	nonsynonymous SNV	Cyp4a12a:NM_177406:exon12:c.T1476G:p.I492M	4qD1	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.191223993	3	0.9999589	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr4	116592943	DC1638tail	autochthonous	sgMsh2	116592943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	100	228	72	0.315789474	exonic	Gpbp1l1	synonymous SNV	"Gpbp1l1:NM_001368177:exon12:c.C1407T:p.D469D,Gpbp1l1:NM_029868:exon12:c.C1407T:p.D469D"	4qD1	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	2	1	1	1.00E-09	ACG	synonymous	GAC	8	GACGACGA	NA
DC1638T10	chr4	134195552	DC1638tail	autochthonous	sgMsh2	134195552	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	87	0	0	NA	exonic	Zpld2	nonsynonymous SNV	Zpld2:NM_001080712:exon4:c.C1469T:p.T490M	4qD3	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.377667385	2	0.9429358	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr4	139390893	DC1638tail	autochthonous	sgMsh2	139390893	T	G	SNV	Mutect2;Vardict	2	0.042	137	16	4	0.25	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon3:c.T328G:p.F110V	4qD3	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.200785192	3	0.9875807	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr4	151983212	DC1638tail	autochthonous	sgMsh2	151983212	T	-	Deletion	Strelka2;Vardict	2	0.1023	88	55	0	0	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-5799947-156200568	4	2	2	0.835	3.991800846	NA	1	0.489055361	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
DC1638T10	chr5	24446263	DC1638tail	autochthonous	sgMsh2	24446263	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	80	51	2	0.039215686	exonic	Tmub1	nonsynonymous SNV	Tmub1:NM_022418:exon3:c.C397A:p.P133T	5qA3	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.320300188	2	0.6567902	GGA	nonsynonymous	CCTGG	10	CCTGGCCTGG	NA
DC1638T10	chr5	31306573	DC1638tail	autochthonous	sgMsh2	31306573	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.175	22	0	0	NA	exonic	Gckr	nonsynonymous SNV	"Gckr:NM_001374741:exon10:c.A836T:p.K279M,Gckr:NM_144909:exon10:c.A836T:p.K279M"	5qB1	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.836604968	1	0.9161312	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr5	96082885	DC1638tail	autochthonous	sgMsh2	96082885	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	215	87	4	0.045977011	exonic	Cnot6l	nonsynonymous SNV	"Cnot6l:NM_001285511:exon10:c.T1222A:p.S408T,Cnot6l:NM_001285514:exon10:c.T937A:p.S313T,Cnot6l:NM_144910:exon10:c.T1222A:p.S408T,Cnot6l:NM_178854:exon10:c.T1237A:p.S413T"	5qE3	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.157759794	3	0.9999408	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr5	104961229	DC1638tail	autochthonous	sgMsh2	104961229	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	234	1	0	0	exonic	Abcg3	nonsynonymous SNV	Abcg3:NM_030239:exon10:c.G1201A:p.V401I	5qE5	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.215126992	3	0.99426	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr5	123990983	DC1638tail	autochthonous	sgMsh2	123990983	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	174	71	2	0.028169014	exonic	Hip1r	synonymous SNV	Hip1r:NM_145070:exon5:c.T399C:p.Y133Y	5qF	chr5-3344487-150478141	4	3	1	0.835	3.991800846	NA	1	0.219907592	3	0.9794115	ATA	synonymous	NA	NA	NA	NA
DC1638T10	chr6	50591805	DC1638tail	autochthonous	sgMsh2	50591805	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	169	10	1	0.1	exonic	4921507P07Rik	nonsynonymous SNV	4921507P07Rik:NM_027564:exon3:c.A143G:p.E48G	6qB2.3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.229468791	3	0.9589687	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	60977157	DC1638tail	autochthonous	sgMsh2	60977157	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	198	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.A2421C:p.Q807H,Mmrn1:NM_027613:exon6:c.A2421C:p.Q807H"	6qB3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.162540394	3	0.9998335	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	85901076	DC1638tail	autochthonous	sgMsh2	85901076	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	312	10	0	0	exonic	Nat8f4	nonsynonymous SNV	Nat8f4:NM_029331:exon4:c.C464T:p.A155V	6qC3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.162540394	3	0.9999975	TGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	88281687	DC1638tail	autochthonous	sgMsh2	88281687	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	154	39	12	0.307692308	exonic	Eefsec	nonsynonymous SNV	Eefsec:NM_023060:exon6:c.G1423A:p.V475M	6qD1	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	1	1	1	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	89893516	DC1638tail	autochthonous	sgMsh2	89893516	T	C	SNV	Mutect2;Vardict	2	0.031	641	1	0	0	exonic	Vmn1r44	synonymous SNV	Vmn1r44:NM_053227:exon1:c.T243C:p.D81D	6qD1	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.148198594	3	1.00E-09	ATT	synonymous	NA	NA	NA	NA
DC1638T10	chr6	98945651	DC1638tail	autochthonous	sgMsh2	98945651	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	126	73	4	0.054794521	exonic	Foxp1	nonsynonymous SNV	"Foxp1:NM_001197322:exon9:c.A928T:p.T310S,Foxp1:NM_001197321:exon12:c.A1219T:p.T407S,Foxp1:NM_053202:exon13:c.A1315T:p.T439S,Foxp1:NM_001347345:exon14:c.A1318T:p.T440S"	6qD3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.210346392	3	0.9749104	GTG	nonsynonymous	G	5	GGGGG	NA
DC1638T10	chr6	120399013	DC1638tail	autochthonous	sgMsh2	120399013	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	371	80	1	0.0125	exonic	Kdm5a	nonsynonymous SNV	Kdm5a:NM_145997:exon13:c.G1729A:p.G577R	6qF1	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.109953796	3	1.12E-09	GGG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	124770618	DC1638tail	autochthonous	sgMsh2	124770618	T	C	SNV	Mutect2;Vardict	2	0.039	117	0	0	NA	exonic	Lrrc23	nonsynonymous SNV	Lrrc23:NM_001302555:exon7:c.A1007G:p.Y336C	6qF2	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.186443393	3	0.990107	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	126934715	DC1638tail	autochthonous	sgMsh2	126934715	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	238	11	0	0	exonic	Rad51ap1	frameshift deletion	"Rad51ap1:NM_001347455:exon3:c.208delA:p.R70Gfs*3,Rad51ap1:NM_009013:exon3:c.208delA:p.R70Gfs*3"	6qF3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.377667385	NA	NA	CTT	frameshift	T	5	TTTTT	-1
DC1638T10	chr6	135079193	DC1638tail	autochthonous	sgMsh2	135079193	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	194	1638	28	0.017094017	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon2:c.T637C:p.F213L	6qG1	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.219907592	3	0.9844085	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	136822810	DC1638tail	autochthonous	sgMsh2	136822810	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	57	126	3	0.023809524	exonic	Wbp11	nonsynonymous SNV	Wbp11:NM_021714:exon5:c.A371G:p.Y124C	6qG1	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.468498782	2	0.9676587	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr6	148777335	DC1638tail	autochthonous	sgMsh2	148777335	T	A	SNV	Mutect2;Vardict	2	0.027	208	82	0	0	exonic	Ipo8	stopgain	Ipo8:NM_001081113:exon23:c.A2764T:p.R922X	6qG3	chr6-3494310-149550203	5	3	2	0.835	3.991800846	NA	1	0.129076195	3	0.9999927	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	4573528	DC1638tail	autochthonous	sgMsh2	4573528	G	A	SNV	Mutect2;Vardict	2	0.025	222	0	0	NA	exonic	Ptprh	synonymous SNV	Ptprh:NM_207270:exon7:c.C732T:p.A244A	7qA1	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.119514995	3	0.9999984	GGG	synonymous	NA	NA	NA	NA
DC1638T10	chr7	28103700	DC1638tail	autochthonous	sgMsh2	28103700	T	C	SNV	Mutect2;Vardict	2	0.026	249	0	0	NA	exonic	Fcgbp	synonymous SNV	Fcgbp:NM_001122603:exon13:c.T4728C:p.S1576S	7qA3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.124295595	3	0.9999994	GTG	synonymous	NA	NA	NA	NA
DC1638T10	chr7	68193469	DC1638tail	autochthonous	sgMsh2	68193469	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	114	81	6	0.074074074	exonic	Igf1r	nonsynonymous SNV	Igf1r:NM_010513:exon11:c.A2327G:p.Y776C	7qC	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.320300188	2	0.8204726	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	79600591	DC1638tail	autochthonous	sgMsh2	79600591	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	75	2	0	0	exonic	Rhcg	nonsynonymous SNV	Rhcg:NM_019799:exon5:c.A743G:p.H248R	7qD2	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.478059982	2	0.9945139	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	80392910	DC1638tail	autochthonous	sgMsh2	80392910	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	85	363	14	0.038567493	exonic	Furin	synonymous SNV	"Furin:NM_001081454:exon10:c.T1128C:p.G376G,Furin:NM_011046:exon10:c.T1128C:p.G376G"	7qD2	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.243810591	3	0.8578814	TAC	synonymous	NA	NA	NA	NA
DC1638T10	chr7	96874373	DC1638tail	autochthonous	sgMsh2	96874373	A	G	SNV	Mutect2;Vardict	2	0.026	239	23	0	0	exonic	Tenm4	synonymous SNV	"Tenm4:NM_001310760:exon27:c.A5121G:p.V1707V,Tenm4:NM_001310762:exon27:c.A5097G:p.V1699V,Tenm4:NM_011858:exon27:c.A5010G:p.V1670V"	7qE1	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.124295595	3	0.999999	TAG	synonymous	NA	NA	NA	NA
DC1638T10	chr7	104021892	DC1638tail	autochthonous	sgMsh2	104021892	C	T	SNV	Mutect2;Vardict	2	0.031	180	0	0	NA	exonic	Olfr640	nonsynonymous SNV	Olfr640:NM_146822:exon1:c.G425A:p.R142H	7qE3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.148198594	3	0.9998837	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	104304262	DC1638tail	autochthonous	sgMsh2	104304262	T	C	SNV	Mutect2;Vardict	2	0.03	412	16	0	0	exonic	Trim12a	nonsynonymous SNV	"Trim12a:NM_001368753:exon3:c.A545G:p.N182S,Trim12a:NM_001368754:exon4:c.A641G:p.N214S,Trim12a:NM_023835:exon4:c.A641G:p.N214S"	7qE3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.143417994	3	3.75E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	105368933	DC1638tail	autochthonous	sgMsh2	105368933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	371	0	0	NA	exonic	Olfr692	synonymous SNV	Olfr692:NM_146355:exon1:c.A606G:p.V202V	7qE3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.196004592	3	0.9999614	TAG	synonymous	NA	NA	NA	NA
DC1638T10	chr7	107794913	DC1638tail	autochthonous	sgMsh2	107794913	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	239	0	0	NA	exonic	Ovch2	nonsynonymous SNV	Ovch2:NM_172908:exon4:c.A332G:p.D111G	7qE3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.239029991	3	0.9513078	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	114237364	DC1638tail	autochthonous	sgMsh2	114237364	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	221	280	18	0.064285714	exonic	Copb1	nonsynonymous SNV	Copb1:NM_033370:exon10:c.A1142T:p.Q381L	7qF1	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.210346392	3	0.9953412	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	127236252	DC1638tail	autochthonous	sgMsh2	127236252	C	A	SNV	Mutect2;Vardict	2	0.042	98	35	3	0.085714286	exonic	Zfp553	synonymous SNV	"Zfp553:NM_001360912:exon2:c.C978A:p.G326G,Zfp553:NM_146201:exon2:c.C978A:p.G326G"	7qF3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.200785192	3	0.9714911	GCC	synonymous	NA	NA	NA	NA
DC1638T10	chr7	129608847	DC1638tail	autochthonous	sgMsh2	129608847	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	247	25	0	0	exonic	Wdr11	nonsynonymous SNV	Wdr11:NM_172255:exon11:c.A1474G:p.S492G	7qF3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.291616589	2	0.8927398	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr7	133909952	DC1638tail	autochthonous	sgMsh2	133909952	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	213	13	0	0	exonic	Adam12	synonymous SNV	Adam12:NM_007400:exon19:c.C2118T:p.G706G	7qF3	chr7-4477867-143880977	4	2	2	0.835	3.991800846	NA	1	0.25815239	3	0.7664063	AGC	synonymous	NA	NA	NA	NA
DC1638T10	chr8	11791492	DC1638tail	autochthonous	sgMsh2	11791492	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	122	91	2	0.021978022	exonic	Arhgef7	nonsynonymous SNV	"Arhgef7:NM_001113518:exon5:c.G236A:p.S79N,Arhgef7:NM_001372323:exon5:c.G461A:p.S154N,Arhgef7:NM_001372325:exon5:c.G236A:p.S79N,Arhgef7:NM_001372326:exon5:c.G236A:p.S79N,Arhgef7:NM_017402:exon5:c.G236A:p.S79N,Arhgef7:NM_001113517:exon6:c.G707A:p.S236N,Arhgef7:NM_001372321:exon6:c.G707A:p.S236N,Arhgef7:NM_001372322:exon6:c.G707A:p.S236N,Arhgef7:NM_001372324:exon6:c.G236A:p.S79N"	8qA1.1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.215126992	3	0.9663382	AGC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	13413118	DC1638tail	autochthonous	sgMsh2	13413118	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	77	0	0	NA	exonic	Grk1	nonsynonymous SNV	Grk1:NM_011881:exon5:c.T1139G:p.V380G	8qA1.1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.320300188	2	0.6392732	GTC	nonsynonymous	G	5	GGGGG	NA
DC1638T10	chr8	13762937	DC1638tail	autochthonous	sgMsh2	13762937	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	282	132	3	0.022727273	exonic	Cdc16	synonymous SNV	"Cdc16:NM_001357247:exon5:c.T186C:p.A62A,Cdc16:NM_027276:exon6:c.T468C:p.A156A"	8qA1.1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.109953796	3	2.22E-08	CTC	synonymous	NA	NA	NA	NA
DC1638T10	chr8	33610735	DC1638tail	autochthonous	sgMsh2	33610735	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	278	718	32	0.044568245	exonic	Ppp2cb	nonsynonymous SNV	Ppp2cb:NM_017374:exon2:c.A183C:p.Q61H	8qA3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.196004592	3	0.999653	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	33610743	DC1638tail	autochthonous	sgMsh2	33610743	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	286	623	29	0.046548957	exonic	Ppp2cb	nonsynonymous SNV	Ppp2cb:NM_017374:exon2:c.A191G:p.D64G	8qA3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.186443393	3	0.9999027	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	40558189	DC1638tail	autochthonous	sgMsh2	40558189	A	G	SNV	Mutect2;Vardict	2	0.054	100	71	3	0.042253521	exonic	Mtmr7	nonsynonymous SNV	Mtmr7:NM_001040699:exon11:c.T1319C:p.L440P	8qA4	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.25815239	3	0.7858602	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	71717260	DC1638tail	autochthonous	sgMsh2	71717260	A	C	SNV	Mutect2;Vardict	2	0.089	46	7	0	0	exonic	Fcho1	nonsynonymous SNV	Fcho1:NM_028715:exon6:c.T218G:p.V73G	8qB3.3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.425473384	2	0.8446548	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	77599666	DC1638tail	autochthonous	sgMsh2	77599666	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	230	76	4	0.052631579	exonic	Tmem184c	nonsynonymous SNV	"Tmem184c:NM_145599:exon7:c.T770C:p.V257A,Tmem184c:NM_001364445:exon8:c.T890C:p.V297A"	8qC1	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.172101593	3	0.9998778	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr8	95299518	DC1638tail	autochthonous	sgMsh2	95299518	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	165	0	0	NA	exonic	Cngb1	synonymous SNV	"Cngb1:NM_001195413:exon6:c.A510G:p.A170A,Cngb1:NM_145601:exon6:c.A510G:p.A170A"	8qC5	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.219907592	3	0.9766795	GTG	synonymous	NA	NA	NA	NA
DC1638T10	chr8	105677221	DC1638tail	autochthonous	sgMsh2	105677221	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	187	77	1	0.012987013	exonic	Ctcf	nonsynonymous SNV	"Ctcf:NM_001358924:exon10:c.A1708G:p.M570V,Ctcf:NM_181322:exon10:c.A1708G:p.M570V"	8qD3	chr8-3192924-126969919	4	2	2	0.835	3.991800846	NA	1	0.143417994	3	0.9999394	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr9	32397055	DC1638tail	autochthonous	sgMsh2	32397055	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	348	0	0	NA	exonic	Kcnj1	synonymous SNV	"Kcnj1:NM_001168354:exon2:c.T774C:p.N258N,Kcnj1:NM_019659:exon2:c.T714C:p.N238N"	9qA4	chr9-7282188-85688817	4	2	2	0.835	3.991800846	NA	1	0.200785192	3	0.9998716	ATG	synonymous	NA	NA	NA	NA
DC1638T10	chr9	59803955	DC1638tail	autochthonous	sgMsh2	59803955	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	139	9	1	0.111111111	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon8:c.G1324A:p.D442N	9qB	chr9-7282188-85688817	4	2	2	0.835	3.991800846	NA	1	0.377667385	2	0.9951195	TGA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr9	65322664	DC1638tail	autochthonous	sgMsh2	65322664	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	342	94	6	0.063829787	exonic	Clpx	nonsynonymous SNV	"Clpx:NM_001044389:exon10:c.T1393A:p.L465I,Clpx:NM_011802:exon11:c.T1435A:p.L479I"	9qC	chr9-7282188-85688817	4	2	2	0.835	3.991800846	NA	1	0.172101593	3	0.999997	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T10	chr9	113656064	DC1638tail	autochthonous	sgMsh2	113656064	C	T	SNV	Mutect2;Vardict	2	0.047	90	190	0	0	exonic	Pdcd6ip	synonymous SNV	"Pdcd6ip:NM_001164677:exon17:c.G2403A:p.P801P,Pdcd6ip:NM_001164678:exon17:c.G2397A:p.P799P,Pdcd6ip:NM_011052:exon17:c.G2388A:p.P796P"	9qF3	chr9-85689906-123664738	3	2	1	0.835	3.991800846	NA	1	0.224688191	3	0.9243395	GCG	synonymous	G	5	GGGGG	NA
DC1638T10	chr9	120572836	DC1638tail	autochthonous	sgMsh2	120572836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	163	119	17	0.142857143	exonic	Rpl14	synonymous SNV	Rpl14:NM_025974:exon3:c.T174C:p.T58T	9qF4	chr9-85689906-123664738	3	2	1	0.835	3.991800846	NA	1	0.420692784	2	0.9999044	CTG	synonymous	NA	NA	NA	NA
DC1638T10	chrX	7592745	DC1638tail	autochthonous	sgMsh2	7592745	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	111	0	0	NA	exonic	Foxp3	synonymous SNV	"Foxp3:NM_001199348:exon12:c.C1140A:p.T380T,Foxp3:NM_054039:exon12:c.C1140A:p.T380T,Foxp3:NM_001199347:exon13:c.C1140A:p.T380T"	XqA1.1	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
DC1638T10	chrX	60121000	DC1638tail	autochthonous	sgMsh2	60121000	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	188	0	0	NA	exonic	Mcf2	synonymous SNV	"Mcf2:NM_001359001:exon8:c.T1066C:p.L356L,Mcf2:NM_001358998:exon9:c.T1186C:p.L396L,Mcf2:NM_001358999:exon9:c.T1186C:p.L396L,Mcf2:NM_001359000:exon9:c.T1183C:p.L395L,Mcf2:NM_001289730:exon10:c.T1303C:p.L435L,Mcf2:NM_133197:exon10:c.T1303C:p.L435L,Mcf2:NM_001289731:exon13:c.T1852C:p.L618L"	XqA6	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
DC1638T10	chrX	74310651	DC1638tail	autochthonous	sgMsh2	74310651	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	323	225	0	0	exonic	Gdi1	nonsynonymous SNV	Gdi1:NM_010273:exon10:c.A1150G:p.S384G	XqA7.3	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T10	chrX	79266694	DC1638tail	autochthonous	sgMsh2	79266694	T	C	SNV	Mutect2;Vardict	2	0.037	124	7	0	0	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon65:c.A9433G:p.S3145G	XqB	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T10	chrX	145119679	DC1638tail	autochthonous	sgMsh2	145119679	A	C	SNV	Mutect2;Vardict	2	0.024	272	0	0	NA	exonic	Rtl4	synonymous SNV	Rtl4:NM_001033795:exon7:c.A96C:p.P32P	XqF2	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
DC1638T10	chrX	145119684	DC1638tail	autochthonous	sgMsh2	145119684	A	T	SNV	Mutect2;Vardict	2	0.025	265	0	0	NA	exonic	Rtl4	nonsynonymous SNV	Rtl4:NM_001033795:exon7:c.A101T:p.D34V	XqF2	NA	NA	NA	NA	0.835	3.991800846	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T3	chr14	21029792	DC1638tail	autochthonous	sgMsh2	21029792	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	101	18	1	0.055555556	exonic	Vcl	nonsynonymous SNV	Vcl:NM_009502:exon20:c.G2960A:p.R987Q	14qA3	chr14-3072210-123592557	4	2	2	0.834	5.446745474	RARE KARYOTYPE	1	0.842482214	NA	NA	CGA	nonsynonymous	GCGA	8	GCGAGCGA	NA
DC1638T3	chr14	57820465	DC1638tail	autochthonous	sgMsh2	57820465	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	117	1	0	0	exonic	Ska3	synonymous SNV	Ska3:NM_198605:exon4:c.G429A:p.P143P	14qC3	chr14-3072210-123592557	4	2	2	0.834	5.446745474	RARE KARYOTYPE	1	0.313481754	NA	NA	TCG	synonymous	NA	NA	NA	NA
DC1638T3	chr17	87718638	DC1638tail	autochthonous	sgMsh2	87718638	-	A	Insertion	Strelka2;Vardict	2	0.172	93	25	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077700-90208269	6	4	2	0.834	5.446745474	RARE KARYOTYPE	1	1	NA	NA	AGA	frameshift	NA	NA	NA	1
DC1638T3	chr2	86075414	DC1638tail	autochthonous	sgMsh2	86075414	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	551	0	0	NA	exonic	Olfr1036	nonsynonymous SNV	Olfr1036:NM_207142:exon1:c.C673T:p.R225C	2qD	chr2-4925576-181511691	6	4	2	0.834	5.446745474	RARE KARYOTYPE	1	0.744519166	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T3	chr8	82331920	DC1638tail	autochthonous	sgMsh2	82331920	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	312	47	13	0.276595745	exonic	Il15	synonymous SNV	"Il15:NM_001254747:exon8:c.G483A:p.T161T,Il15:NM_008357:exon8:c.G483A:p.T161T"	8qC2	chr8-3194938-125762769	6	3	3	0.834	5.446745474	RARE KARYOTYPE	2	1	NA	NA	ACG	synonymous	NA	NA	NA	NA
DC1638T3	chr9	40006683	DC1638tail	autochthonous	sgMsh2	40006683	C	T	SNV	Mutect2;Vardict	2	0.024	318	0	0	NA	exonic	Olfr980	nonsynonymous SNV	Olfr980:NM_147106:exon1:c.G265A:p.G89R	9qA5.1	chr9-3409793-123664738	4	2	2	0.834	5.446745474	RARE KARYOTYPE	1	0.156740877	NA	NA	CCG	nonsynonymous	GCCCC	10	GCCCCGCCCC	NA
DC1638T4	chr1	20222971	DC1638tail	autochthonous	sgMsh2	20222971	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	176	11	2	0.181818182	exonic	Pkhd1	synonymous SNV	Pkhd1:NM_153179:exon54:c.C8424T:p.G2808G	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.608926867	2	0.9965774	TGC	synonymous	NA	NA	NA	NA
DC1638T4	chr1	21505815	DC1638tail	autochthonous	sgMsh2	21505815	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	143	1	1	1	exonic	Kcnq5	frameshift deletion	"Kcnq5:NM_001160139:exon4:c.664delA:p.T222Lfs*44,Kcnq5:NM_001310477:exon4:c.664delA:p.T222Lfs*44,Kcnq5:NM_023872:exon4:c.664delA:p.T222Lfs*44"	1qA4	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.530476166	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1638T4	chr1	36702126	DC1638tail	autochthonous	sgMsh2	36702126	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	64	244	35	0.143442623	exonic	Actr1b	nonsynonymous SNV	Actr1b:NM_146107:exon5:c.G373A:p.A125T	1qB	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.590248129	2	0.8813122	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr1	37911094	DC1638tail	autochthonous	sgMsh2	37911094	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	47	0	0	NA	exonic	Lyg2	nonsynonymous SNV	Lyg2:NM_001033427:exon3:c.G152T:p.G51V	1qB	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.720999296	1	0.653953	CCC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr1	66416758	DC1638tail	autochthonous	sgMsh2	66416758	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	136	0	0	NA	exonic	Map2	frameshift deletion	Map2:NM_001310634:exon9:c.4429delA:p.K1478Nfs*14	1qC3	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.821864483	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T4	chr1	105692049	DC1638tail	autochthonous	sgMsh2	105692049	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.025	302	77	4	0.051948052	exonic	Relch	nonsynonymous SNV	"Relch:NM_029349:exon5:c.G930T:p.E310D,Relch:NM_173187:exon6:c.G1002T:p.E334D"	1qE2.1	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.093393691	3	1	AGG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr1	107154661	DC1638tail	autochthonous	sgMsh2	107154661	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	279	0	0	NA	exonic	Serpinb3b	nonsynonymous SNV	Serpinb3b:NM_198680:exon8:c.A872G:p.D291G	1qE2.1	chr1-4783928-193352278	4	2	2	0.732	2.734567279	NA	1	0.085922196	3	1	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr10	39120269	DC1638tail	autochthonous	sgMsh2	39120269	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	97	4	0	0	exonic	Fam229b	synonymous SNV	"Fam229b:NM_001359440:exon4:c.G114A:p.T38T,Fam229b:NM_001359441:exon4:c.G114A:p.T38T,Fam229b:NM_001359442:exon4:c.G114A:p.T38T,Fam229b:NM_001359443:exon4:c.G114A:p.T38T,Fam229b:NM_001359444:exon4:c.G114A:p.T38T,Fam229b:NM_183254:exon4:c.G114A:p.T38T"	10qB1	chr10-3120209-130453386	2	1	1	0.732	2.734567279	NA	1	0.911522426	1	0.9983194	ACG	synonymous	NA	NA	NA	NA
DC1638T4	chr10	61117737	DC1638tail	autochthonous	sgMsh2	61117737	T	-	Deletion	Strelka2;Vardict	2	0.1742	132	118	2	0.016949153	exonic	Sgpl1	frameshift deletion	"Sgpl1:NM_001316673:exon4:c.219delA:p.K73Nfs*18,Sgpl1:NM_001316674:exon4:c.219delA:p.K73Nfs*18,Sgpl1:NM_009163:exon4:c.219delA:p.K73Nfs*18"	10qB4	chr10-3120209-130453386	2	1	1	0.732	2.734567279	NA	1	0.650767241	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
DC1638T4	chr10	81587624	DC1638tail	autochthonous	sgMsh2	81587624	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	69	10	2	0.2	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon16:c.C1539T:p.A513A,Tle2:NM_019725:exon16:c.C1644T:p.A548A"	10qC1	chr10-3120209-130453386	2	1	1	0.732	2.734567279	NA	1	0.862957707	1	0.9756029	CCA	synonymous	NA	NA	NA	NA
DC1638T4	chr10	82712094	DC1638tail	autochthonous	sgMsh2	82712094	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.35	115	25	4	0.16	exonic	Hcfc2	frameshift deletion	"Hcfc2:NM_001081218:exon7:c.919delA:p.N309Ifs*31,Hcfc2:NM_001368720:exon7:c.919delA:p.N309Ifs*31"	10qC1	chr10-3120209-130453386	2	1	1	0.732	2.734567279	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
DC1638T4	chr10	100448893	DC1638tail	autochthonous	sgMsh2	100448893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	148	20	2	0.1	exonic	Tmtc3	stopgain	"Tmtc3:NM_001033332:exon13:c.C1879T:p.R627X,Tmtc3:NM_001110013:exon13:c.C1879T:p.R627X"	10qD1	chr10-3120209-130453386	2	1	1	0.732	2.734567279	NA	1	0.941408408	1	0.9999791	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr11	50158426	DC1638tail	autochthonous	sgMsh2	50158426	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	100	79	22	0.278481013	exonic	Tbc1d9b	synonymous SNV	"Tbc1d9b:NM_001290759:exon13:c.C2199T:p.D733D,Tbc1d9b:NM_001290760:exon13:c.C2199T:p.D733D,Tbc1d9b:NM_029745:exon13:c.C2199T:p.D733D"	11qB1.3	chr11-3133205-69579350	2	1	1	0.732	2.734567279	NA	1	0.799449997	1	0.9546715	ACA	synonymous	NA	NA	NA	NA
DC1638T4	chr11	73602740	DC1638tail	autochthonous	sgMsh2	73602740	C	A	SNV	Mutect2;Vardict	2	0.018	443	0	0	NA	exonic	Olfr384	synonymous SNV	Olfr384:NM_207224:exon1:c.C159A:p.S53S	11qB4	chr11-69590981-121956809	2	1	1	0.732	2.734567279	NA	1	0.067243458	3	1	CCC	synonymous	NA	NA	NA	NA
DC1638T4	chr11	77476220	DC1638tail	autochthonous	sgMsh2	77476220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	75	45	16	0.355555556	exonic	Ankrd13b	nonsynonymous SNV	"Ankrd13b:NM_001373882:exon7:c.G785A:p.S262N,Ankrd13b:NM_001373883:exon7:c.G785A:p.S262N,Ankrd13b:NM_172945:exon7:c.G785A:p.S262N"	11qB5	chr11-69590981-121956809	2	1	1	0.732	2.734567279	NA	1	0.881636445	1	0.9877466	ACT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr11	89015543	DC1638tail	autochthonous	sgMsh2	89015543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	137	67	16	0.23880597	exonic	Trim25	synonymous SNV	Trim25:NM_009546:exon7:c.C1191T:p.P397P	11qC	chr11-69590981-121956809	2	1	1	0.732	2.734567279	NA	1	0.433346727	2	0.9999846	CCG	synonymous	NA	NA	NA	NA
DC1638T4	chr12	3596837	DC1638tail	autochthonous	sgMsh2	3596837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	123	95	26	0.273684211	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001162465:exon4:c.A337G:p.N113D,Dtnb:NM_001355528:exon4:c.A337G:p.N113D,Dtnb:NM_001374710:exon4:c.A337G:p.N113D,Dtnb:NM_007886:exon4:c.A337G:p.N113D"	12qA1.1	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.743413782	1	0.8068036	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr12	35086963	DC1638tail	autochthonous	sgMsh2	35086963	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	98	164	8	0.048780488	exonic	Snx13	nonsynonymous SNV	Snx13:NM_001014973:exon5:c.C422T:p.A141V	12qA3	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.250295093	3	0.9983195	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr12	110544079	DC1638tail	autochthonous	sgMsh2	110544079	C	T	SNV	Mutect2;Vardict	2	0.028	238	311	2	0.006430868	exonic	Ppp2r5c	nonsynonymous SNV	"Ppp2r5c:NM_001364212:exon2:c.C59T:p.A20V,Ppp2r5c:NM_001081457:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001081458:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364205:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364206:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364207:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364208:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364209:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364210:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364211:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364214:exon3:c.C299T:p.A100V,Ppp2r5c:NM_012023:exon3:c.C299T:p.A100V,Ppp2r5c:NM_001364213:exon4:c.C74T:p.A25V,Ppp2r5c:NM_001373953:exon4:c.C74T:p.A25V,Ppp2r5c:NM_001135001:exon5:c.C470T:p.A157V,Ppp2r5c:NM_001364204:exon5:c.C470T:p.A157V,Ppp2r5c:NM_001373949:exon5:c.C470T:p.A157V,Ppp2r5c:NM_001373950:exon5:c.C470T:p.A157V,Ppp2r5c:NM_001373951:exon5:c.C470T:p.A157V,Ppp2r5c:NM_001373954:exon5:c.C74T:p.A25V"	12qF1	chr12-3237715-119465464	3	2	1	0.732	2.734567279	NA	1	0.104600934	3	1	GCA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr13	77046586	DC1638tail	autochthonous	sgMsh2	77046586	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	125	17	0	0	exonic	Slf1	synonymous SNV	Slf1:NM_134071:exon20:c.G2619T:p.T873T	13qC1	chr13-3554284-119495179	2	1	1	0.732	2.734567279	NA	1	0.197994625	3	0.9999986	GCG	synonymous	NA	NA	NA	NA
DC1638T4	chr14	7905540	DC1638tail	autochthonous	sgMsh2	7905540	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	138	146	52	0.356164384	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon21:c.G3289A:p.V1097I,Flnb:NM_134080:exon21:c.G3289A:p.V1097I"	14qA1	chr14-3072210-123592557	3	2	1	0.732	2.734567279	NA	1	0.844278969	1	0.9972338	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr14	64285093	DC1638tail	autochthonous	sgMsh2	64285093	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	165	36	0	0	exonic	Msra	nonsynonymous SNV	"Msra:NM_001253714:exon2:c.G227A:p.R76H,Msra:NM_001253712:exon3:c.G296A:p.R99H,Msra:NM_001253716:exon3:c.G170A:p.R57H,Msra:NM_001347639:exon3:c.G104A:p.R35H,Msra:NM_026322:exon8:c.G296A:p.R99H"	14qD1	chr14-3072210-123592557	3	2	1	0.732	2.734567279	NA	1	0.130751168	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr15	84120192	DC1638tail	autochthonous	sgMsh2	84120192	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	68	0	0	NA	exonic	Pnpla5	frameshift deletion	Pnpla5:NM_029427:exon4:c.693delC:p.K232Sfs*4	15qE2	chr15-3280572-103525164	3	2	1	0.732	2.734567279	NA	1	0.795714249	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1638T4	chr15	85537538	DC1638tail	autochthonous	sgMsh2	85537538	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	41	35	8	0.228571429	exonic	Wnt7b	frameshift deletion	"Wnt7b:NM_001163633:exon4:c.700delG:p.A234Pfs*176,Wnt7b:NM_001163634:exon4:c.913delG:p.A305Pfs*176,Wnt7b:NM_009528:exon4:c.901delG:p.A301Pfs*176"	15qE2	chr15-3280572-103525164	3	2	1	0.732	2.734567279	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1638T4	chr17	17831158	DC1638tail	autochthonous	sgMsh2	17831158	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	73	33	6	0.181818182	exonic	Spaca6	nonsynonymous SNV	Spaca6:NM_001162909:exon1:c.G155A:p.R52H	17qA3.2	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.848014716	1	0.9712716	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr17	28333563	DC1638tail	autochthonous	sgMsh2	28333563	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	55	46	1	0.02173913	exonic	Tead3	frameshift deletion	"Tead3:NM_001098226:exon10:c.933delG:p.L312fs*0,Tead3:NM_001204156:exon10:c.855delG:p.L286fs*0,Tead3:NM_011566:exon10:c.855delG:p.L286fs*0"	17qA3.3	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.470704204	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1638T4	chr17	29594741	DC1638tail	autochthonous	sgMsh2	29594741	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	214	53	8	0.150943396	exonic	Tbc1d22b	synonymous SNV	Tbc1d22b:NM_198647:exon9:c.C1047T:p.A349A	17qA3.3	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.926465417	1	0.9999994	CCG	synonymous	NA	NA	NA	NA
DC1638T4	chr17	34632289	DC1638tail	autochthonous	sgMsh2	34632289	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.32	31	17	0	0	exonic	Prrt1	frameshift insertion	"Prrt1:NM_001368730:exon3:c.412dupC:p.N140Qfs*30,Prrt1:NM_001368729:exon4:c.628dupC:p.N212Qfs*30"	17qB1	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
DC1638T4	chr17	66348328	DC1638tail	autochthonous	sgMsh2	66348328	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	73	138	38	0.275362319	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon11:c.C3986T:p.S1329L,Mtcl1:NM_172963:exon11:c.C3986T:p.S1329L"	17qE1.1	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.784507006	1	0.8875814	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr17	87718632	DC1638tail	autochthonous	sgMsh2	87718648	TCGTCAGACCGGGGTGA	-	Deletion	Strelka2;Vardict	2	0.2394	71	8	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2037_2053del:p.R680Cfs*12	17qE4	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.894337987	NA	NA	TTC	frameshift	ACAT	8	ACATACAT	-17
DC1638T4	chr17	87718634	DC1638tail	autochthonous	sgMsh2	87718644	GTCAGACCGGG	-	Deletion	Strelka2;Vardict	2	0.2295	61	8	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2039_2049del:p.Q681Dfs*13	17qE4	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.857354086	NA	NA	CGT	frameshift	NA	NA	NA	-11
DC1638T4	chr17	87719306	DC1638tail	autochthonous	sgMsh2	87719306	-	TTAATAA	Insertion	Mutect2;Vardict	2	0.049	260	15	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon14:c.2229_2230insTTAATAA:p.I747Nfs*3	17qE4	chr17-3077483-94727405	3	2	1	0.732	2.734567279	NA	1	0.183051635	NA	NA	CCT	frameshift	NA	NA	NA	7
DC1638T4	chr18	45592109	DC1638tail	autochthonous	sgMsh2	45592109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	170	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	"Kcnn2:NM_080465:exon3:c.T671C:p.I224T,Kcnn2:NM_001312905:exon6:c.T1496C:p.I499T"	18qC	chr18-3423654-84962790	3	2	1	0.732	2.734567279	NA	1	0.579040886	2	0.9991344	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr19	11983937	DC1638tail	autochthonous	sgMsh2	11983937	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	140	86	3	0.034883721	exonic	Osbp	nonsynonymous SNV	Osbp:NM_001033174:exon8:c.C1339T:p.R447C	19qA	chr19-3600535-61225035	3	2	1	0.732	2.734567279	NA	1	0.194258878	3	0.9999998	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr2	10126260	DC1638tail	autochthonous	sgMsh2	10126260	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	221	218	71	0.325688073	exonic	Itih2	nonsynonymous SNV	Itih2:NM_010582:exon4:c.G265T:p.V89L	2qA1	chr2-4925576-181511691	3	2	1	0.732	2.734567279	NA	1	0.758356773	1	0.9552842	ACC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr2	66273476	DC1638tail	autochthonous	sgMsh2	66273476	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	476	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon27:c.G5439T:p.E1813D,Scn1a:NM_018733:exon27:c.G5406T:p.E1802D"	2qC1.3	chr2-4925576-181511691	3	2	1	0.732	2.734567279	NA	1	0.82560023	1	0.9999999	TCT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr2	167208292	DC1638tail	autochthonous	sgMsh2	167208292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	84	9	0	0	exonic	Ptgis	nonsynonymous SNV	Ptgis:NM_008968:exon7:c.G916T:p.A306S	2qH3	chr2-4925576-181511691	3	2	1	0.732	2.734567279	NA	2	1	1	0.9996488	GCT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr3	55048471	DC1638tail	autochthonous	sgMsh2	55048471	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	148	0	0	NA	exonic	Ccna1	nonsynonymous SNV	"Ccna1:NM_001305221:exon6:c.C903A:p.N301K,Ccna1:NM_007628:exon6:c.C903A:p.N301K"	3qC	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.664963082	2	0.8870633	GGT	nonsynonymous	TTGG	15	TTGGTTGGTGGTTGG	NA
DC1638T4	chr3	66975487	DC1638tail	autochthonous	sgMsh2	66975487	G	A	SNV	Mutect2;Vardict	2	0.079	64	0	0	NA	exonic	Shox2	nonsynonymous SNV	"Shox2:NM_001302357:exon4:c.C659T:p.A220V,Shox2:NM_001302358:exon4:c.C272T:p.A91V,Shox2:NM_001302359:exon4:c.C272T:p.A91V,Shox2:NM_013665:exon4:c.C659T:p.A220V"	3qE1	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.295124064	3	0.8672057	TGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr3	92340397	DC1638tail	autochthonous	sgMsh2	92340397	A	-	Deletion	Mutect2;Vardict	2	0.043	204	0	0	NA	exonic	Sprr2d	frameshift deletion	Sprr2d:NM_011470:exon2:c.144delA:p.K49Nfs*152	3qF1	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.160637149	NA	NA	CAA	frameshift	TCC	9	TCCTCCTCC	-1
DC1638T4	chr3	103874245	DC1638tail	autochthonous	sgMsh2	103874245	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	139	4	0	0	exonic	Ptpn22	nonsynonymous SNV	Ptpn22:NM_008979:exon4:c.C339A:p.F113L	3qF2.2	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.896579436	1	0.999727	TCT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr3	122508334	DC1638tail	autochthonous	sgMsh2	122508334	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	71	58	0	0	exonic	Bcar3	nonsynonymous SNV	"Bcar3:NM_001355264:exon3:c.G422A:p.R141H,Bcar3:NM_013867:exon5:c.G677A:p.R226H"	3qG1	chr3-3792373-159911278	3	2	1	0.732	2.734567279	NA	1	0.272709578	3	0.9667339	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr4	115452766	DC1638tail	autochthonous	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2222	63	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3973093-155091012	2	1	1	0.732	2.734567279	NA	1	0.830083128	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
DC1638T4	chr4	116089034	DC1638tail	autochthonous	sgMsh2	116089034	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	32	73	26	0.356164384	exonic	Lrrc41	nonsynonymous SNV	Lrrc41:NM_153521:exon4:c.G945T:p.R315S	4qD1	chr4-3973093-155091012	2	1	1	0.732	2.734567279	NA	1	0.545419157	2	0.7503077	GGG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr5	8812659	DC1638tail	autochthonous	sgMsh2	8812659	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.167	249	5	1	0.2	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon6:c.G340A:p.A114T	5qA1	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.623869857	2	0.9992098	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr5	72343021	DC1638tail	autochthonous	sgMsh2	72343021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	192	10	0	0	exonic	Corin	nonsynonymous SNV	"Corin:NM_001122756:exon11:c.C1460T:p.A487V,Corin:NM_016869:exon11:c.C1658T:p.A553V"	5qC3.2	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.788242754	1	0.9895378	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr5	104521545	DC1638tail	autochthonous	sgMsh2	104521545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	62	20	8	0.4	exonic	Thoc2l	frameshift deletion	Thoc2l:NM_001166581:exon2:c.3932delA:p.I1313fs*0	5qE5	chr5-3344373-150758621	3	2	1	0.732	2.734567279	NA	1	0.706056306	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T4	chr6	46001313	DC1638tail	autochthonous	sgMsh2	46001313	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	160	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon6:c.A901C:p.T301P	6qB2.3	chr6-3494310-113068119	3	2	1	0.732	2.734567279	NA	1	0.392253503	2	0.9997601	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr6	135923354	DC1638tail	autochthonous	sgMsh2	135923354	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	191	0	0	NA	exonic	Grin2b	synonymous SNV	"Grin2b:NM_001363750:exon5:c.C528T:p.F176F,Grin2b:NM_008171:exon5:c.C528T:p.F176F"	6qG1	chr6-113104747-145232543	4	3	1	0.732	2.734567279	NA	1	0.108336682	3	1.00E-09	GGA	synonymous	NA	NA	NA	NA
DC1638T4	chr7	19096378	DC1638tail	autochthonous	sgMsh2	19096378	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	47	3	1	0.333333333	exonic	Six5	nonsynonymous SNV	Six5:NM_011383:exon2:c.C929T:p.A310V	7qA3	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.720999296	1	0.653953	GCC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
DC1638T4	chr7	23424022	DC1638tail	autochthonous	sgMsh2	23424022	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	204	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001039143:exon9:c.C2259T:p.C753C,Nlrp5:NM_001305857:exon9:c.C2307T:p.C769C,Nlrp5:NM_011860:exon10:c.C2307T:p.C769C"	7qA3	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.76209252	1	0.9576146	GCG	synonymous	NA	NA	NA	NA
DC1638T4	chr7	86466262	DC1638tail	autochthonous	sgMsh2	86466262	T	C	SNV	Mutect2;Vardict	2	0.022	239	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T850C:p.L284L	7qD3	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.082186448	3	1	CTT	synonymous	NA	NA	NA	NA
DC1638T4	chr7	92661421	DC1638tail	autochthonous	sgMsh2	92661421	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	337	56	3	0.053571429	exonic	Pcf11	nonsynonymous SNV	Pcf11:NM_029078:exon5:c.G1358A:p.G453D	7qE1	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.201730373	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr7	102125251	DC1638tail	autochthonous	sgMsh2	102125251	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	81	32	0.395061728	exonic	Nup98	nonsynonymous SNV	Nup98:NM_001287164:exon29:c.C4576T:p.H1526Y	7qE2	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.922729669	1	0.9971433	TGC	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr7	107436792	DC1638tail	autochthonous	sgMsh2	107436792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	144	4	1	0.25	exonic	Syt9	nonsynonymous SNV	Syt9:NM_021889:exon3:c.C1015A:p.L339I	7qE3	chr7-10175819-142989150	3	2	1	0.732	2.734567279	NA	1	0.862957707	1	0.9990496	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr8	84537497	DC1638tail	autochthonous	sgMsh2	84537497	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	52	3	1	0.333333333	exonic	Cacna1a	synonymous SNV	"Cacna1a:NM_001252059:exon9:c.C1182A:p.A394A,Cacna1a:NM_001252060:exon10:c.C1323A:p.A441A,Cacna1a:NM_001252061:exon10:c.C1323A:p.A441A,Cacna1a:NM_007578:exon10:c.C1323A:p.A441A"	8qC2	chr8-3194938-126969919	2	1	1	0.732	2.734567279	NA	1	0.840543221	1	0.9296894	CCG	synonymous	NA	NA	NA	NA
DC1638T4	chr8	120145509	DC1638tail	autochthonous	sgMsh2	120145509	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	63	13	6	0.461538462	exonic	6430548M08Rik	nonsynonymous SNV	"6430548M08Rik:NM_001163760:exon2:c.G175A:p.E59K,6430548M08Rik:NM_001163761:exon2:c.G175A:p.E59K,6430548M08Rik:NM_001163762:exon2:c.G175A:p.E59K,6430548M08Rik:NM_172286:exon2:c.G175A:p.E59K"	8qE1	chr8-3194938-126969919	2	1	1	0.732	2.734567279	NA	1	1	1	0.9978404	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr9	20347326	DC1638tail	autochthonous	sgMsh2	20347326	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	142	3	0	0	exonic	Zfp560	stopgain	Zfp560:NM_001004190:exon7:c.C2239T:p.Q747X	9qA3	chr9-3342997-123664738	2	1	1	0.732	2.734567279	NA	1	1	1	0.9999977	TGT	nonsynonymous	NA	NA	NA	NA
DC1638T4	chr9	70409301	DC1638tail	autochthonous	sgMsh2	70409301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	262	18	10	0.555555556	exonic	Ccnb2	synonymous SNV	Ccnb2:NM_007630:exon8:c.T1065C:p.N355N	9qD	chr9-3342997-123664738	2	1	1	0.732	2.734567279	NA	1	1	1	1.07E-09	CAT	synonymous	NA	NA	NA	NA
DC1638T4	chr9	75682048	DC1638tail	autochthonous	sgMsh2	75682048	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	206	0	0	NA	exonic	Scg3	nonsynonymous SNV	"Scg3:NM_001164790:exon4:c.G322A:p.V108M,Scg3:NM_009130:exon4:c.G322A:p.V108M"	9qD	chr9-3342997-123664738	2	1	1	0.732	2.734567279	NA	1	0.156901401	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chrX	8523420	DC1638tail	autochthonous	sgMsh2	8523420	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	587	0	0	NA	exonic	Gm14459	synonymous SNV	Gm14459:NM_001126491:exon4:c.C309T:p.C103C	XqA1.1	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	NA	NA	AGC	synonymous	NA	NA	NA	NA
DC1638T4	chrX	95899258	DC1638tail	autochthonous	sgMsh2	95899258	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	113	0	0	NA	exonic	Zc3h12b	nonsynonymous SNV	Zc3h12b:NM_001034907:exon5:c.G163T:p.G55C	XqC3	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
DC1638T4	chrX	134238171	DC1638tail	autochthonous	sgMsh2	134238171	G	-	Deletion	Strelka2;Vardict	2	0.0632	95	30	3	0.1	exonic	Trmt2b	frameshift deletion	"Trmt2b:NM_172540:exon12:c.1327delC:p.H443Mfs*21,Trmt2b:NM_001167994:exon13:c.1327delC:p.H443Mfs*21"	XqE3	NA	NA	NA	NA	0.732	2.734567279	NA	NA	NA	NA	NA	TGG	frameshift	NA	NA	NA	-1
DC1638T5	chr1	4345145	DC1638tail	autochthonous	sgMsh2	4345145	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	265	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.T5743C:p.L1915L	1qA1	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
DC1638T5	chr1	5602671	DC1638tail	autochthonous	sgMsh2	5602671	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	172	0	0	NA	exonic	Oprk1	nonsynonymous SNV	"Oprk1:NM_001204371:exon4:c.T1030C:p.F344L,Oprk1:NM_011011:exon4:c.T1030C:p.F344L"	1qA1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999397	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	9746414	DC1638tail	autochthonous	sgMsh2	9746414	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	295	40	0	0	exonic	Vcpip1	synonymous SNV	Vcpip1:NM_173443:exon1:c.T1743G:p.G581G	1qA2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.00E-09	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr1	10141653	DC1638tail	autochthonous	sgMsh2	10141653	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	76	128	4	0.03125	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon36:c.A5164G:p.S1722G	1qA2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9104935	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	16369825	DC1638tail	autochthonous	sgMsh2	16369825	T	-	Deletion	Strelka2;Vardict	2	0.0543	129	40	0	0	exonic	Stau2	frameshift deletion	"Stau2:NM_001111272:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_001347045:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_025303:exon10:c.1091delA:p.N364Mfs*66,Stau2:NM_001347044:exon12:c.1091delA:p.N364Mfs*66"	1qA3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.260980889	NA	NA	ATT	frameshift	"CAG, T"	"8, 8"	"CAGCAGCA, TTTTTTTT"	-1
DC1638T5	chr1	36416894	DC1638tail	autochthonous	sgMsh2	36416894	A	-	Deletion	Mutect2;Vardict	2	0.048	117	0	0	NA	exonic	Fer1l5	frameshift deletion	Fer1l5:NM_001277076:exon42:c.4540delA:p.K1514Nfs*23	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr1	36551800	DC1638tail	autochthonous	sgMsh2	36551800	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	127	51	5	0.098039216	exonic	Sema4c	nonsynonymous SNV	"Sema4c:NM_001126047:exon12:c.T1369A:p.W457R,Sema4c:NM_001304329:exon12:c.T1369A:p.W457R,Sema4c:NM_001304330:exon13:c.T1369A:p.W457R"	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.7314423	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	37897722	DC1638tail	autochthonous	sgMsh2	37897722	A	G	SNV	Mutect2;Vardict	2	0.043	102	392	11	0.028061224	exonic	Mrpl30	nonsynonymous SNV	"Mrpl30:NM_001356482:exon4:c.A167G:p.Y56C,Mrpl30:NM_027098:exon5:c.A167G:p.Y56C"	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9985213	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	38320154	DC1638tail	autochthonous	sgMsh2	38320154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	84	0	0	NA	exonic	Aff3	nonsynonymous SNV	Aff3:NM_001290814:exon8:c.A1049G:p.D350G	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.668072625	2	0.8752332	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	40541969	DC1638tail	autochthonous	sgMsh2	40541969	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	272	123	0	0	exonic	Il18rap	nonsynonymous SNV	Il18rap:NM_010553:exon10:c.T1000G:p.F334V	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.01E-09	GTT	nonsynonymous	GTTT	9	GTTTGTTTG	NA
DC1638T5	chr1	40607773	DC1638tail	autochthonous	sgMsh2	40607773	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	139	9	0	0	exonic	Slc9a4	nonsynonymous SNV	Slc9a4:NM_177084:exon6:c.A1426G:p.R476G	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.562319	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	43032953	DC1638tail	autochthonous	sgMsh2	43032953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	78	0	0	NA	exonic	Gpr45	nonsynonymous SNV	Gpr45:NM_053107:exon2:c.A755G:p.Q252R	1qB	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	0.9999805	CAG	nonsynonymous	GCA	13	GCAGCAGCAGCAG	NA
DC1638T5	chr1	45327627	DC1638tail	autochthonous	sgMsh2	45327627	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	104	72	0	0	exonic	Col3a1	synonymous SNV	Col3a1:NM_009930:exon9:c.A726G:p.G242G	1qC1.1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	2	0.9967972	GAC	synonymous	NA	NA	NA	NA
DC1638T5	chr1	45805434	DC1638tail	autochthonous	sgMsh2	45805434	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	84	64	1	0.015625	exonic	Wdr75	frameshift deletion	Wdr75:NM_028599:exon6:c.553delA:p.T187Hfs*21	1qC1.1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	GAA	frameshift	A	6	AAAAAA	-1
DC1638T5	chr1	46680574	DC1638tail	autochthonous	sgMsh2	46680574	A	C	SNV	Mutect2;Vardict	2	0.023	228	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon44:c.A8184C:p.S2728S	1qC1.1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.110544391	3	1.01E-09	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr1	46807176	DC1638tail	autochthonous	sgMsh2	46807176	-	A	Insertion	Mutect2;Vardict	2	0.032	315	2	0	0	exonic	Dnah7c	frameshift insertion	Dnah7c:NM_001310335:exon65:c.11887dupA:p.S3965Vfs*14	1qC1.1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	NA	NA	GCA	frameshift	A	5	AAAAA	1
DC1638T5	chr1	51301122	DC1638tail	autochthonous	sgMsh2	51301122	G	A	SNV	Mutect2;Vardict	2	0.051	90	158	6	0.037974684	exonic	Cavin2	nonsynonymous SNV	Cavin2:NM_138741:exon2:c.G957A:p.M319I	1qC1.1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9820362	TGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	59867747	DC1638tail	autochthonous	sgMsh2	59867747	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	165	52	0	0	exonic	Bmpr2	synonymous SNV	Bmpr2:NM_007561:exon12:c.T1998C:p.N666N	1qC2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9997991	ATA	synonymous	NA	NA	NA	NA
DC1638T5	chr1	60354548	DC1638tail	autochthonous	sgMsh2	60354548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	274	115	20	0.173913043	exonic	Cyp20a1	synonymous SNV	"Cyp20a1:NM_001313721:exon3:c.A18G:p.L6L,Cyp20a1:NM_030013:exon4:c.A324G:p.L108L"	1qC2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.528690567	2	1.38E-09	TAG	synonymous	NA	NA	NA	NA
DC1638T5	chr1	63725711	DC1638tail	autochthonous	sgMsh2	63725711	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	251	0	0	NA	exonic	Mdh1b	nonsynonymous SNV	Mdh1b:NM_029696:exon2:c.A32G:p.N11S	1qC2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1.13E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	65233830	DC1638tail	autochthonous	sgMsh2	65233830	T	C	SNV	Mutect2;Vardict	2	0.042	130	8	0	0	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon14:c.T1797C:p.N599N,Pikfyve:NM_011086:exon14:c.T1662C:p.N554N"	1qC2	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9997905	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr1	73924957	DC1638tail	autochthonous	sgMsh2	73924957	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	147	107	4	0.037383178	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon24:c.A4475G:p.Y1492C,Tns1:NM_027884:exon26:c.A4538G:p.Y1513C"	1qC3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.7776446	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	75248134	DC1638tail	autochthonous	sgMsh2	75248134	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	140	262	5	0.019083969	exonic	Ptprn	nonsynonymous SNV	"Ptprn:NM_001359281:exon21:c.T2489A:p.L830H,Ptprn:NM_008985:exon21:c.T2768A:p.L923H"	1qC4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999436	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	75262092	DC1638tail	autochthonous	sgMsh2	75262092	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	89	130	0	0	exonic	Ptprn	nonsynonymous SNV	Ptprn:NM_008985:exon3:c.T224G:p.L75R	1qC4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.8166346	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	82717841	DC1638tail	autochthonous	sgMsh2	82717841	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	112	9	0	0	exonic	Col4a3	synonymous SNV	Col4a3:NM_007734:exon51:c.T4761C:p.S1587S	1qC5	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9966107	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr1	86099884	DC1638tail	autochthonous	sgMsh2	86099884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	211	3	0	0	exonic	Htr2b	nonsynonymous SNV	Htr2b:NM_008311:exon4:c.T899G:p.L300R	1qC5	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.379695952	2	0.9981857	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	87125737	DC1638tail	autochthonous	sgMsh2	87125737	C	T	SNV	Mutect2;Vardict	2	0.034	155	0	0	NA	exonic	Akp3	synonymous SNV	Akp3:NM_007432:exon4:c.C411T:p.F137F	1qC5	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	0.999998	TCG	synonymous	NA	NA	NA	NA
DC1638T5	chr1	87781677	DC1638tail	autochthonous	sgMsh2	87781677	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	266	53	0	0	exonic	Atg16l1	nonsynonymous SNV	"Atg16l1:NM_001205392:exon11:c.T1081G:p.Y361D,Atg16l1:NM_029846:exon12:c.T1138G:p.Y380D,Atg16l1:NM_001205391:exon13:c.T1186G:p.Y396D"	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.02E-09	TTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	88107669	DC1638tail	autochthonous	sgMsh2	88107669	T	C	SNV	Mutect2;Vardict	2	0.025	377	2	0	0	exonic	Ugt1a6b	nonsynonymous SNV	Ugt1a6b:NM_201410:exon2:c.T728C:p.L243P	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	88218290	DC1638tail	autochthonous	sgMsh2	88218290	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	734	61	0	0	exonic	Ugt1a1;Ugt1a10;Ugt1a2;Ugt1a5;Ugt1a6a;Ugt1a6b;Ugt1a7c;Ugt1a8;Ugt1a9	nonsynonymous SNV	"Ugt1a8:NM_001378375:exon5:c.G1459C:p.D487H,Ugt1a2:NM_013701:exon5:c.G1468C:p.D490H,Ugt1a10:NM_201641:exon5:c.G1459C:p.D487H,Ugt1a7c:NM_201642:exon5:c.G1462C:p.D488H,Ugt1a5:NM_201643:exon5:c.G1456C:p.D486H,Ugt1a9:NM_201644:exon5:c.G1453C:p.D485H,Ugt1a1:NM_201645:exon5:c.G1474C:p.D492H,Ugt1a6a:NM_145079:exon6:c.G1462C:p.D488H,Ugt1a6b:NM_201410:exon6:c.G1462C:p.D488H"	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	1	GGA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	90961144	DC1638tail	autochthonous	sgMsh2	90961144	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	64	17	3	0.176470588	exonic	Rab17	synonymous SNV	"Rab17:NM_001159725:exon3:c.T276C:p.N92N,Rab17:NM_008998:exon3:c.T276C:p.N92N"	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	2	0.9946621	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr1	93786602	DC1638tail	autochthonous	sgMsh2	93786602	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	121	62	1	0.016129032	exonic	Atg4b	nonsynonymous SNV	"Atg4b:NM_001368266:exon11:c.T1007C:p.L336P,Atg4b:NM_174874:exon12:c.T1106C:p.L369P"	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9191323	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	93829219	DC1638tail	autochthonous	sgMsh2	93829219	T	G	SNV	Mutect2;Vardict	2	0.039	147	5	0	0	exonic	D2hgdh	synonymous SNV	"D2hgdh:NM_001310767:exon3:c.T414G:p.V138V,D2hgdh:NM_178882:exon3:c.T348G:p.V116V"	1qD	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999754	TTT	synonymous	NA	NA	NA	NA
DC1638T5	chr1	126258468	DC1638tail	autochthonous	sgMsh2	126258468	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	220	0	0	NA	exonic	Nckap5	nonsynonymous SNV	"Nckap5:NM_172484:exon4:c.A148G:p.T50A,Nckap5:NM_001081756:exon6:c.A352G:p.T118A,Nckap5:NM_176957:exon6:c.A352G:p.T118A"	1qE3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1.12E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	130737673	DC1638tail	autochthonous	sgMsh2	130737673	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	67	51	0	0	exonic	AA986860	nonsynonymous SNV	AA986860:NM_177604:exon2:c.A91G:p.T31A	1qE4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.389308508	2	0.8745558	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	131129519	DC1638tail	autochthonous	sgMsh2	131129519	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	160	90	5	0.055555556	exonic	Dyrk3	nonsynonymous SNV	Dyrk3:NM_145508:exon3:c.T916A:p.F306I	1qE4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	2	0.9999889	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	131158244	DC1638tail	autochthonous	sgMsh2	131158244	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	145	99	7	0.070707071	exonic	Eif2d	nonsynonymous SNV	"Eif2d:NM_001136070:exon5:c.T475G:p.S159A,Eif2d:NM_010709:exon5:c.T475G:p.S159A"	1qE4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	2	0.8763746	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	131271779	DC1638tail	autochthonous	sgMsh2	131271779	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	117	13	1	0.076923077	exonic	Ikbke	nonsynonymous SNV	Ikbke:NM_019777:exon9:c.A976G:p.I326V	1qE4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	3	0.6453766	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	134390843	DC1638tail	autochthonous	sgMsh2	134390843	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	196	0	0	NA	exonic	Mgat4f	nonsynonymous SNV	Mgat4f:NM_173771:exon4:c.T1352C:p.V451A	1qE4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9999789	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	158664019	DC1638tail	autochthonous	sgMsh2	158664019	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	174	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon18:c.T2989G:p.S997A,Astn1:NM_007495:exon18:c.T2965G:p.S989A"	1qH1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9988306	CTC	nonsynonymous	CT	8	CTCTCTCT	NA
DC1638T5	chr1	158834809	DC1638tail	autochthonous	sgMsh2	158834809	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	115	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon11:c.T3595A:p.Y1199N	1qH1	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.983369	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr1	171417277	DC1638tail	autochthonous	sgMsh2	171417277	T	C	SNV	Mutect2;Vardict	2	0.041	278	75	4	0.053333333	exonic	Usf1	synonymous SNV	"Usf1:NM_001305676:exon7:c.T508C:p.L170L,Usf1:NM_001305677:exon7:c.T508C:p.L170L,Usf1:NM_001305678:exon7:c.T331C:p.L111L,Usf1:NM_009480:exon7:c.T508C:p.L170L"	1qH3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	1.41E-08	ATT	synonymous	NA	NA	NA	NA
DC1638T5	chr1	175706009	DC1638tail	autochthonous	sgMsh2	175706009	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	127	0	0	NA	exonic	Wdr64	nonsynonymous SNV	Wdr64:NM_029453:exon2:c.T210G:p.N70K	1qH3	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9997487	ATC	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr1	177767783	DC1638tail	autochthonous	sgMsh2	177767783	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	119	920	19	0.020652174	exonic	Adss	nonsynonymous SNV	Adss:NM_007422:exon12:c.A1190T:p.K397I	1qH4	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9939511	TTT	nonsynonymous	TTTA	8	TTTATTTA	NA
DC1638T5	chr1	185407591	DC1638tail	autochthonous	sgMsh2	185407591	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	120	206	5	0.024271845	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon20:c.A2876C:p.E959A,Eprs:NM_001357474:exon21:c.A2897C:p.E966A"	1qH5	chr1-4867294-195062457	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.8921275	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	4357266	DC1638tail	autochthonous	sgMsh2	4357266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	179	27	0	0	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.T4390C:p.S1464P	10qA1	chr10-3120209-20100498	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9999434	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	5228985	DC1638tail	autochthonous	sgMsh2	5228985	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	167	4	0	0	exonic	Syne1	synonymous SNV	"Syne1:NM_001347711:exon77:c.T13509C:p.N4503N,Syne1:NM_001347732:exon77:c.T13488C:p.N4496N"	10qA1	chr10-3120209-20100498	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999937	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr10	11290120	DC1638tail	autochthonous	sgMsh2	11290120	T	C	SNV	Mutect2;Vardict	2	0.029	225	63	2	0.031746032	exonic	Fbxo30	synonymous SNV	"Fbxo30:NM_001168297:exon2:c.T585C:p.A195A,Fbxo30:NM_027968:exon2:c.T585C:p.A195A"	10qA1	chr10-3120209-20100498	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.41E-09	CTG	synonymous	GCT	9	GCTGCTGCT	NA
DC1638T5	chr10	19005252	DC1638tail	autochthonous	sgMsh2	19005252	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	175	134	3	0.02238806	exonic	Tnfaip3	nonsynonymous SNV	"Tnfaip3:NM_001166402:exon6:c.T1177C:p.W393R,Tnfaip3:NM_009397:exon7:c.T1066C:p.W356R"	10qA3	chr10-3120209-20100498	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9999669	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	20079336	DC1638tail	autochthonous	sgMsh2	20079336	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	122	4	0	0	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon13:c.A1954T:p.R652W	10qA3	chr10-3120209-20100498	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.79303585	1	0.9954277	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	39832519	DC1638tail	autochthonous	sgMsh2	39832519	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	134	11	0	0	exonic	Rev3l	nonsynonymous SNV	Rev3l:NM_011264:exon16:c.A6731G:p.N2244S	10qB1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9816737	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	40290540	DC1638tail	autochthonous	sgMsh2	40290540	A	G	SNV	Mutect2;Vardict	2	0.037	175	36	1	0.027777778	exonic	Amd1;Amd2	synonymous SNV	"Amd2:NM_007444:exon6:c.T546C:p.S182S,Amd1:NM_009665:exon6:c.T546C:p.S182S"	10qB1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999985	CAC	synonymous	CTCA	8	CTCACTCA	NA
DC1638T5	chr10	52046040	DC1638tail	autochthonous	sgMsh2	52046040	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	146	10	0	0	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon44:c.T6999C:p.S2333S	10qB3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.704994	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr10	58478985	DC1638tail	autochthonous	sgMsh2	58478985	T	C	SNV	Mutect2;Vardict	2	0.038	178	141	1	0.007092199	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.T5526C:p.T1842T	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999981	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	59892992	DC1638tail	autochthonous	sgMsh2	59892992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	121	110	5	0.045454545	exonic	Dnajb12	nonsynonymous SNV	"Dnajb12:NM_001374756:exon5:c.A701G:p.Q234R,Dnajb12:NM_001376970:exon5:c.A701G:p.Q234R,Dnajb12:NM_019965:exon5:c.A701G:p.Q234R"	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.47582151	2	0.9999219	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	60186486	DC1638tail	autochthonous	sgMsh2	60186486	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	126	0	0	NA	exonic	Chst3	synonymous SNV	Chst3:NM_016803:exon4:c.T556C:p.L186L	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9975351	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	60779724	DC1638tail	autochthonous	sgMsh2	60779724	A	G	SNV	Mutect2;Vardict	2	0.102	40	92	0	0	exonic	Unc5b	synonymous SNV	"Unc5b:NM_001359273:exon4:c.T496C:p.L166L,Unc5b:NM_029770:exon4:c.T496C:p.L166L"	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.490240344	2	0.9496518	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	62261632	DC1638tail	autochthonous	sgMsh2	62261632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	142	0	0	NA	exonic	Tacr2	nonsynonymous SNV	Tacr2:NM_009314:exon4:c.T890C:p.M297T	10qB4	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.769004461	1	0.9921261	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	77049714	DC1638tail	autochthonous	sgMsh2	77049714	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	97	32	0	0	exonic	Slc19a1	nonsynonymous SNV	"Slc19a1:NM_001199271:exon6:c.C1447A:p.L483I,Slc19a1:NM_031196:exon6:c.C1447A:p.L483I"	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.9278473	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	78000789	DC1638tail	autochthonous	sgMsh2	78000789	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	108	156	1	0.006410256	exonic	Pfkl	synonymous SNV	Pfkl:NM_008826:exon5:c.T480C:p.G160G	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.09687738	GAC	synonymous	NA	NA	NA	NA
DC1638T5	chr10	78847735	DC1638tail	autochthonous	sgMsh2	78847735	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	139	0	0	NA	exonic	Olfr1356	nonsynonymous SNV	Olfr1356:NM_146308:exon1:c.A179G:p.Y60C	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	2.21E-09	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	78955302	DC1638tail	autochthonous	sgMsh2	78955302	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	308	0	0	NA	exonic	Olfr8	synonymous SNV	Olfr8:NM_207201:exon1:c.C96T:p.F32F	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	1	TCC	synonymous	NA	NA	NA	NA
DC1638T5	chr10	79728986	DC1638tail	autochthonous	sgMsh2	79728986	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.131	39	2	0	0	exonic	Hcn2	nonsynonymous SNV	Hcn2:NM_008226:exon4:c.A1231G:p.M411V	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	2	0.919428	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	79978022	DC1638tail	autochthonous	sgMsh2	79978022	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	79	158	6	0.037974684	exonic	Tmem259	nonsynonymous SNV	"Tmem259:NM_001359632:exon9:c.T1303C:p.Y435H,Tmem259:NM_001003949:exon10:c.T1231C:p.Y411H"	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	8.92E-09	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	80125523	DC1638tail	autochthonous	sgMsh2	80125523	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	180	176	4	0.022727273	exonic	Stk11	nonsynonymous SNV	"Stk11:NM_001301853:exon3:c.T419G:p.L140R,Stk11:NM_001301854:exon3:c.T47G:p.L16R,Stk11:NM_011492:exon3:c.T419G:p.L140R"	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.9877384	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	80128445	DC1638tail	autochthonous	sgMsh2	80128445	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	28	8	0	0	exonic	Stk11	nonsynonymous SNV	Stk11:NM_001301853:exon9:c.T1172A:p.M391K	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	2	0.9135636	ATG	nonsynonymous	CATG	8	CATGCATG	NA
DC1638T5	chr10	81259663	DC1638tail	autochthonous	sgMsh2	81259663	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	102	3	1	0.333333333	exonic	Matk	nonsynonymous SNV	"Matk:NM_001285853:exon5:c.A316G:p.R106G,Matk:NM_001285854:exon5:c.A313G:p.R105G,Matk:NM_001285855:exon5:c.A313G:p.R105G,Matk:NM_010768:exon6:c.A433G:p.R145G"	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9685515	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	83493438	DC1638tail	autochthonous	sgMsh2	83493438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	202	5	0	0	exonic	Aldh1l2	nonsynonymous SNV	Aldh1l2:NM_153543:exon21:c.T2507C:p.F836S	10qC1	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	91102016	DC1638tail	autochthonous	sgMsh2	91102016	A	G	SNV	Mutect2;Vardict	2	0.033	162	64	5	0.078125	exonic	Ikbip	nonsynonymous SNV	Ikbip:NM_027078:exon3:c.A550G:p.T184A	10qC2	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	0.9999992	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	116501265	DC1638tail	autochthonous	sgMsh2	116501265	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.143	113	90	16	0.177777778	exonic	Cnot2	synonymous SNV	"Cnot2:NM_001359253:exon4:c.T132C:p.A44A,Cnot2:NM_001359563:exon6:c.T447C:p.A149A,Cnot2:NM_028082:exon7:c.T579C:p.A193A,Cnot2:NM_001037846:exon8:c.T702C:p.A234A,Cnot2:NM_001037847:exon8:c.T732C:p.A244A,Cnot2:NM_001359247:exon9:c.T675C:p.A225A,Cnot2:NM_001359248:exon9:c.T675C:p.A225A,Cnot2:NM_001359249:exon9:c.T675C:p.A225A,Cnot2:NM_001359250:exon9:c.T675C:p.A225A,Cnot2:NM_001359251:exon9:c.T675C:p.A225A,Cnot2:NM_001359252:exon9:c.T675C:p.A225A"	10qD2	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.687297737	2	0.7344726	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	118152093	DC1638tail	autochthonous	sgMsh2	118152093	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	197	12	1	0.083333333	exonic	Mdm1	nonsynonymous SNV	"Mdm1:NM_001162905:exon5:c.T770C:p.L257P,Mdm1:NM_001162904:exon6:c.T905C:p.L302P,Mdm1:NM_010785:exon6:c.T905C:p.L302P,Mdm1:NM_148922:exon6:c.T905C:p.L302P"	10qD2	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9996848	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	127091196	DC1638tail	autochthonous	sgMsh2	127091196	G	A	SNV	Mutect2;Vardict	2	0.082	50	1	0	0	exonic	Agap2	synonymous SNV	"Agap2:NM_001301014:exon17:c.G3006A:p.E1002E,Agap2:NM_001033263:exon18:c.G3066A:p.E1022E"	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.394114786	2	0.8062621	AGG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	127503578	DC1638tail	autochthonous	sgMsh2	127503578	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	269	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon4:c.G342T:p.K114N,Stac3:NM_177707:exon4:c.G342T:p.K114N"	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9999596	AGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	127715006	DC1638tail	autochthonous	sgMsh2	127715006	A	C	SNV	Mutect2;Vardict	2	0.06	73	0	0	NA	exonic	Myo1a	nonsynonymous SNV	Myo1a:NM_001081219:exon17:c.A1886C:p.Q629P	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.8453763	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	128090048	DC1638tail	autochthonous	sgMsh2	128090048	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	155	1754	55	0.031356899	exonic	Atp5b	nonsynonymous SNV	Atp5b:NM_016774:exon10:c.T1519G:p.F507V	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9997803	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr10	128250023	DC1638tail	autochthonous	sgMsh2	128250023	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	146	38	0	0	exonic	Timeless	synonymous SNV	"Timeless:NM_001136082:exon23:c.A2766T:p.V922V,Timeless:NM_001164080:exon23:c.A2766T:p.V922V,Timeless:NM_001164081:exon23:c.A2766T:p.V922V,Timeless:NM_011589:exon23:c.A2766T:p.V922V"	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999737	TAG	synonymous	NA	NA	NA	NA
DC1638T5	chr10	129626038	DC1638tail	autochthonous	sgMsh2	129626038	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	105	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.A22C:p.S8R	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	2	0.9985763	CTC	nonsynonymous	ACTC	10	ACTCACTCAC	NA
DC1638T5	chr10	130418605	DC1638tail	autochthonous	sgMsh2	130418605	A	-	Deletion	Mutect2;Vardict	2	0.024	347	0	0	NA	exonic	Vmn2r85	frameshift deletion	Vmn2r85:NM_001102602:exon6:c.2209delT:p.C737Afs*42	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr10	130425949	DC1638tail	autochthonous	sgMsh2	130425949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	320	0	0	NA	exonic	Vmn2r85	nonsynonymous SNV	Vmn2r85:NM_001102602:exon3:c.T518C:p.L173P	10qD3	chr10-20103873-130453386	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.624816124	2	0.9999505	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	5064259	DC1638tail	autochthonous	sgMsh2	5064259	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	47	143	2	0.013986014	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A200C:p.N67T,Gas2l1:NM_001190408:exon2:c.A200C:p.N67T,Gas2l1:NM_030228:exon3:c.A200C:p.N67T,Gas2l1:NM_144560:exon3:c.A200C:p.N67T"	11qA1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.432565009	2	0.09490298	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	5962356	DC1638tail	autochthonous	sgMsh2	5962356	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	183	270	4	0.014814815	exonic	Ykt6	nonsynonymous SNV	Ykt6:NM_019661:exon4:c.A308C:p.K103T	11qA1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	6.22E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	11815374	DC1638tail	autochthonous	sgMsh2	11815374	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	139	0	0	NA	exonic	Ddc	frameshift deletion	"Ddc:NM_001190448:exon14:c.1297delA:p.I433Sfs*37,Ddc:NM_016672:exon14:c.1297delA:p.I433Sfs*37"	11qA1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1638T5	chr11	22973758	DC1638tail	autochthonous	sgMsh2	22973758	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	188	28	0	0	exonic	Zrsr1	nonsynonymous SNV	Zrsr1:NM_011663:exon1:c.A531C:p.R177S	11qA3.2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.99999	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	26471574	DC1638tail	autochthonous	sgMsh2	26471574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	169	33	0	0	exonic	Vrk2	synonymous SNV	"Vrk2:NM_001252447:exon12:c.T1236C:p.S412S,Vrk2:NM_027260:exon13:c.T1383C:p.S461S"	11qA3.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.9822782	AAC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	29155776	DC1638tail	autochthonous	sgMsh2	29155776	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.123	113	124	1	0.008064516	exonic	Pnpt1	frameshift deletion	Pnpt1:NM_027869:exon23:c.1884delA:p.K630Nfs*7	11qA3.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.591172179	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr11	29538676	DC1638tail	autochthonous	sgMsh2	29538676	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	156	57	1	0.01754386	exonic	Mtif2	nonsynonymous SNV	"Mtif2:NM_001282118:exon8:c.A989G:p.N330S,Mtif2:NM_001282119:exon8:c.A1046G:p.N349S,Mtif2:NM_001282120:exon8:c.A551G:p.N184S,Mtif2:NM_133767:exon8:c.A989G:p.N330S"	11qA3.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	0.9272422	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	29792261	DC1638tail	autochthonous	sgMsh2	29792261	T	-	Deletion	Mutect2;Vardict	2	0.05	103	0	0	NA	exonic	Eml6	frameshift deletion	Eml6:NM_146016:exon23:c.3276delA:p.D1093Ifs*69	11qA3.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	NA	NA	CTT	frameshift	NA	NA	NA	-1
DC1638T5	chr11	30851233	DC1638tail	autochthonous	sgMsh2	30851233	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	170	132	7	0.053030303	exonic	Psme4	nonsynonymous SNV	Psme4:NM_134013:exon38:c.T4387C:p.C1463R	11qA4	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.999933	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	32300753	DC1638tail	autochthonous	sgMsh2	32300753	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	95	0	0	NA	exonic	Hbq1a	nonsynonymous SNV	Hbq1a:NM_175000:exon3:c.T435A:p.N145K	11qA4	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	6.10E-09	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	42626585	DC1638tail	autochthonous	sgMsh2	42626585	A	-	Deletion	Strelka2;Vardict	2	0.0667	120	0	0	NA	exonic	Gabrb2	frameshift deletion	"Gabrb2:NM_001362647:exon9:c.1119delA:p.N375Tfs*8,Gabrb2:NM_001362649:exon9:c.1023delA:p.N343Tfs*8,Gabrb2:NM_001347314:exon10:c.1233delA:p.N413Tfs*8,Gabrb2:NM_001362646:exon10:c.1119delA:p.N375Tfs*8,Gabrb2:NM_008070:exon10:c.1119delA:p.N375Tfs*8"	11qA5	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.320578735	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr11	43445237	DC1638tail	autochthonous	sgMsh2	43445237	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	141	105	5	0.047619048	exonic	Slu7	synonymous SNV	"Slu7:NM_198936:exon14:c.A1446G:p.K482K,Slu7:NM_148673:exon15:c.A1446G:p.K482K"	11qB1.1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.6945115	AAC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	45984825	DC1638tail	autochthonous	sgMsh2	45984825	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	182	0	0	NA	exonic	Sox30	nonsynonymous SNV	Sox30:NM_173384:exon3:c.T1403G:p.I468S	11qB1.1	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	2	0.9999952	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	49280675	DC1638tail	autochthonous	sgMsh2	49280675	T	A	SNV	Mutect2;Vardict	2	0.016	543	0	0	NA	exonic	Olfr1393	nonsynonymous SNV	Olfr1393:NM_146471:exon1:c.T526A:p.F176I	11qB1.2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.076900446	3	1	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
DC1638T5	chr11	50234481	DC1638tail	autochthonous	sgMsh2	50234481	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	175	284	16	0.056338028	exonic	Mgat4b	nonsynonymous SNV	Mgat4b:NM_145926:exon14:c.T1582C:p.S528P	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9972752	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	50383847	DC1638tail	autochthonous	sgMsh2	50383847	A	C	SNV	Mutect2;Vardict	2	0.022	418	300	6	0.02	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon10:c.A1134C:p.E378D,Hnrnph1:NM_001362529:exon10:c.A1113C:p.E371D,Hnrnph1:NM_001362530:exon10:c.A1134C:p.E378D,Hnrnph1:NM_001362534:exon10:c.A531C:p.E177D,Hnrnph1:NM_001347487:exon11:c.A1134C:p.E378D,Hnrnph1:NM_001362524:exon11:c.A1134C:p.E378D,Hnrnph1:NM_001362525:exon11:c.A1134C:p.E378D,Hnrnph1:NM_001362527:exon11:c.A1113C:p.E371D,Hnrnph1:NM_001362528:exon11:c.A1113C:p.E371D,Hnrnph1:NM_021510:exon11:c.A1134C:p.E378D,Hnrnph1:NM_001362523:exon12:c.A1134C:p.E378D"	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.105738113	3	1	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	51602625	DC1638tail	autochthonous	sgMsh2	51602625	T	A	SNV	Mutect2;Vardict	2	0.036	122	3412	68	0.01992966	exonic	Hnrnpab	nonsynonymous SNV	"Hnrnpab:NM_001048061:exon6:c.A755T:p.N252I,Hnrnpab:NM_010448:exon6:c.A755T:p.N252I"	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999463	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	51686040	DC1638tail	autochthonous	sgMsh2	51686040	A	T	SNV	Mutect2;Vardict	2	0.022	310	85	0	0	exonic	0610009B22Rik	synonymous SNV	0610009B22Rik:NM_025319:exon2:c.T30A:p.V10V	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.105738113	3	1.00E-09	CAA	synonymous	NA	NA	NA	NA
DC1638T5	chr11	51789247	DC1638tail	autochthonous	sgMsh2	51789247	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	225	306	1	0.003267974	exonic	Sar1b	synonymous SNV	Sar1b:NM_025535:exon6:c.A399C:p.G133G	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.41E-09	GAA	synonymous	NA	NA	NA	NA
DC1638T5	chr11	51789251	DC1638tail	autochthonous	sgMsh2	51789251	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	221	308	1	0.003246753	exonic	Sar1b	stopgain	Sar1b:NM_025535:exon6:c.A403T:p.K135X	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	2.04E-09	TAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	53270983	DC1638tail	autochthonous	sgMsh2	53270983	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	105	364	8	0.021978022	exonic	Hspa4	nonsynonymous SNV	Hspa4:NM_008300:exon11:c.T1341G:p.S447R	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9990464	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	53777406	DC1638tail	autochthonous	sgMsh2	53777406	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	178	1	0	0	exonic	Irf1	synonymous SNV	Irf1:NM_001159393:exon10:c.T891C:p.S297S	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	0.999999	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	58954778	DC1638tail	autochthonous	sgMsh2	58954778	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	138	62	0	0	exonic	H2aw	nonsynonymous SNV	H2aw:NM_178218:exon1:c.A41G:p.K14R	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.331633174	2	0.6090313	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	59613817	DC1638tail	autochthonous	sgMsh2	59613817	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	126	0	0	NA	exonic	Olfr225	synonymous SNV	Olfr225:NM_001011740:exon1:c.A852T:p.L284L	11qB1.3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9439957	TAA	synonymous	NA	NA	NA	NA
DC1638T5	chr11	61069596	DC1638tail	autochthonous	sgMsh2	61069596	T	A	SNV	Mutect2;Vardict	2	0.032	167	0	0	NA	exonic	Kcnj12	nonsynonymous SNV	"Kcnj12:NM_001267593:exon2:c.T413A:p.I138N,Kcnj12:NM_010603:exon3:c.T719A:p.I240N"	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	61155292	DC1638tail	autochthonous	sgMsh2	61155292	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	128	289	17	0.058823529	exonic	Usp22	nonsynonymous SNV	Usp22:NM_001004143:exon12:c.T1423A:p.L475M	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.09846035	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	61160667	DC1638tail	autochthonous	sgMsh2	61160667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	206	253	24	0.09486166	exonic	Usp22	synonymous SNV	Usp22:NM_001004143:exon7:c.T849C:p.N283N	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.379695952	2	0.9978643	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr11	62552218	DC1638tail	autochthonous	sgMsh2	62552218	A	G	SNV	Mutect2;MuSe;Vardict	3	0.092	136	248	4	0.016129032	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A73G:p.N25D,Ubb:NM_011664:exon2:c.A73G:p.N25D"	11qB2	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9997562	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	67303826	DC1638tail	autochthonous	sgMsh2	67303826	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	165	0	0	NA	exonic	Myh8	nonsynonymous SNV	Myh8:NM_177369:exon34:c.T4862C:p.M1621T	11qB3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.998939	ATG	nonsynonymous	"AAG, GGAG"	"10, 8"	"AAGAAGAAGA, GGAGGGAG"	NA
DC1638T5	chr11	69048242	DC1638tail	autochthonous	sgMsh2	69048242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	170	98	12	0.12244898	exonic	Aurkb	nonsynonymous SNV	Aurkb:NM_011496:exon4:c.A290G:p.Y97C	11qB3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	0.9999991	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	69353283	DC1638tail	autochthonous	sgMsh2	69353283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	145	71	0	0	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon24:c.A3955G:p.N1319D	11qB3	chr11-3133205-69579350	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9997473	TTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	69735962	DC1638tail	autochthonous	sgMsh2	69735962	A	G	SNV	Mutect2;Vardict	2	0.04	115	109	3	0.027522936	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon27:c.T4545C:p.P1515P	11qB3	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9997088	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	69889656	DC1638tail	autochthonous	sgMsh2	69889656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	246	5	0	0	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon8:c.A631C:p.N211H	11qB3	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.8646191	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	70640094	DC1638tail	autochthonous	sgMsh2	70640094	A	G	SNV	Mutect2;Vardict	2	0.029	227	1	0	0	exonic	Gp1ba	nonsynonymous SNV	Gp1ba:NM_010326:exon2:c.A685G:p.I229V	11qB3	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.34E-09	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	73013896	DC1638tail	autochthonous	sgMsh2	73013896	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	170	0	0	NA	exonic	P2rx1	nonsynonymous SNV	P2rx1:NM_008771:exon11:c.A1109G:p.Y370C	11qB4	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	73129219	DC1638tail	autochthonous	sgMsh2	73129219	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	187	1	0	0	exonic	Itgae	nonsynonymous SNV	"Itgae:NM_001361245:exon21:c.T2543C:p.L848P,Itgae:NM_008399:exon21:c.T2546C:p.L849P"	11qB4	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9999302	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	74288778	DC1638tail	autochthonous	sgMsh2	74288778	T	C	SNV	Mutect2;Vardict	2	0.039	313	0	0	NA	exonic	Olfr59	nonsynonymous SNV	"Olfr59:NM_001362665:exon2:c.T131C:p.L44P,Olfr59:NM_011002:exon2:c.T131C:p.L44P"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	1.30E-09	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	75442062	DC1638tail	autochthonous	sgMsh2	75442062	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	68	27	1	0.037037037	exonic	Wdr81	nonsynonymous SNV	Wdr81:NM_138950:exon10:c.T5512C:p.S1838P	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.8351472	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	75492320	DC1638tail	autochthonous	sgMsh2	75492320	T	C	SNV	Mutect2;Vardict	2	0.036	149	74	2	0.027027027	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon11:c.T1657C:p.L553L	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999931	TTT	synonymous	NA	NA	NA	NA
DC1638T5	chr11	75496504	DC1638tail	autochthonous	sgMsh2	75496504	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	72	117	13	0.111111111	exonic	Prpf8	nonsynonymous SNV	Prpf8:NM_138659:exon22:c.T3610C:p.Y1204H	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.754585627	1	0.7650241	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	75520949	DC1638tail	autochthonous	sgMsh2	75520949	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	88	2	0	0	exonic	Scarf1	nonsynonymous SNV	Scarf1:NM_001004157:exon6:c.T1063G:p.S355A	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.40853362	2	0.9739699	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	75522202	DC1638tail	autochthonous	sgMsh2	75522202	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	79	0	0	NA	exonic	Scarf1	nonsynonymous SNV	Scarf1:NM_001004157:exon8:c.A1273G:p.I425V	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7671726	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	75660202	DC1638tail	autochthonous	sgMsh2	75660202	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	83	248	43	0.173387097	exonic	Myo1c	nonsynonymous SNV	"Myo1c:NM_001080774:exon6:c.A554G:p.Y185C,Myo1c:NM_001080775:exon6:c.A602G:p.Y201C,Myo1c:NM_001370611:exon6:c.A659G:p.Y220C,Myo1c:NM_008659:exon6:c.A554G:p.Y185C"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.562334512	2	0.9980684	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	76966796	DC1638tail	autochthonous	sgMsh2	76966796	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	210	113	4	0.03539823	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon8:c.T866G:p.L289W	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	2	0.9288634	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	77453866	DC1638tail	autochthonous	sgMsh2	77453866	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	129	24	3	0.125	exonic	Ssh2	synonymous SNV	"Ssh2:NM_001291190:exon14:c.A2676C:p.T892T,Ssh2:NM_177710:exon15:c.A2658C:p.T886T"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	0.9999772	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	77477502	DC1638tail	autochthonous	sgMsh2	77477502	T	C	SNV	Mutect2;Vardict	2	0.065	86	19	0	0	exonic	Ankrd13b	nonsynonymous SNV	"Ankrd13b:NM_001373882:exon3:c.A293G:p.Q98R,Ankrd13b:NM_001373883:exon3:c.A293G:p.Q98R,Ankrd13b:NM_172945:exon3:c.A293G:p.Q98R"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.6925953	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	78023587	DC1638tail	autochthonous	sgMsh2	78023587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	76	56	14	0.25	exonic	Phf12	synonymous SNV	Phf12:NM_174852:exon9:c.A1854G:p.V618V	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9999732	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	78268462	DC1638tail	autochthonous	sgMsh2	78268462	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	250	192	2	0.010416667	exonic	2610507B11Rik	synonymous SNV	2610507B11Rik:NM_001002004:exon13:c.A1485T:p.A495A	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.02E-09	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	78271878	DC1638tail	autochthonous	sgMsh2	78271878	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	130	213	2	0.009389671	exonic	2610507B11Rik	synonymous SNV	2610507B11Rik:NM_001002004:exon16:c.T2565G:p.T855T	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	3	0.6457065	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	80330582	DC1638tail	autochthonous	sgMsh2	80330582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	77	0	0	NA	exonic	Rhbdl3	nonsynonymous SNV	Rhbdl3:NM_139228:exon5:c.T545C:p.V182A	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	2	0.9978395	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	80394358	DC1638tail	autochthonous	sgMsh2	80394358	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	186	363	4	0.011019284	exonic	Zfp207	nonsynonymous SNV	"Zfp207:NM_001362721:exon8:c.A853G:p.T285A,Zfp207:NM_001130170:exon9:c.A946G:p.T316A,Zfp207:NM_001130171:exon9:c.A901G:p.T301A,Zfp207:NM_011751:exon9:c.A889G:p.T297A,Zfp207:NM_001130169:exon10:c.A994G:p.T332A"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9998829	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	80394423	DC1638tail	autochthonous	sgMsh2	80394423	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	167	478	13	0.027196653	exonic	Zfp207	synonymous SNV	"Zfp207:NM_001362721:exon8:c.A918T:p.T306T,Zfp207:NM_001130170:exon9:c.A1011T:p.T337T,Zfp207:NM_001130171:exon9:c.A966T:p.T322T,Zfp207:NM_011751:exon9:c.A954T:p.T318T,Zfp207:NM_001130169:exon10:c.A1059T:p.T353T"	11qB5	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999937	CAA	synonymous	AACA	8	AACAAACA	NA
DC1638T5	chr11	83442647	DC1638tail	autochthonous	sgMsh2	83442647	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	69	5	1	0.2	exonic	Mmp28	nonsynonymous SNV	"Mmp28:NM_001320300:exon8:c.T1467G:p.D489E,Mmp28:NM_080453:exon8:c.T1437G:p.D479E,Mmp28:NM_172797:exon8:c.T1395G:p.D465E"	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7531767	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	84215904	DC1638tail	autochthonous	sgMsh2	84215904	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	199	15	0	0	exonic	Acaca	nonsynonymous SNV	Acaca:NM_133360:exon3:c.T428A:p.M143K	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9978277	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	85036536	DC1638tail	autochthonous	sgMsh2	85036536	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	238	56	10	0.178571429	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon16:c.T1853A:p.I618N	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.663266347	2	0.9629126	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	85214299	DC1638tail	autochthonous	sgMsh2	85214299	A	G	SNV	Mutect2;Vardict	2	0.035	150	73	0	0	exonic	Appbp2	nonsynonymous SNV	Appbp2:NM_025825:exon4:c.T440C:p.L147P	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999956	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	86298482	DC1638tail	autochthonous	sgMsh2	86298482	T	C	SNV	Mutect2;Vardict	2	0.031	168	58	0	0	exonic	Med13	synonymous SNV	Med13:NM_001080931:exon16:c.A3600G:p.S1200S	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	0.9999998	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	86722245	DC1638tail	autochthonous	sgMsh2	86722245	A	G	SNV	Mutect2;Vardict	2	0.039	143	331	8	0.024169184	exonic	Cltc	nonsynonymous SNV	"Cltc:NM_001003908:exon9:c.T1451C:p.V484A,Cltc:NM_001356393:exon9:c.T1451C:p.V484A"	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999677	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	86789233	DC1638tail	autochthonous	sgMsh2	86789233	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	144	152	0	0	exonic	Dhx40	nonsynonymous SNV	Dhx40:NM_026191:exon10:c.T1277A:p.I426N	11qC	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999854	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	94013657	DC1638tail	autochthonous	sgMsh2	94013657	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	67	98	2	0.020408163	exonic	Spag9	frameshift deletion	"Spag9:NM_001199203:exon2:c.338delA:p.K115Rfs*9,Spag9:NM_001199204:exon2:c.338delA:p.K115Rfs*9,Spag9:NM_001363157:exon2:c.338delA:p.K115Rfs*9,Spag9:NM_027569:exon2:c.338delA:p.K115Rfs*9"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.63442868	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr11	94647402	DC1638tail	autochthonous	sgMsh2	94647402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	74	11	2	0.181818182	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_177752:exon7:c.T1235C:p.L412P,Eme1:NM_001379688:exon8:c.T1292C:p.L431P"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9999631	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	95031922	DC1638tail	autochthonous	sgMsh2	95031922	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	123	27	0	0	exonic	Pdk2	nonsynonymous SNV	"Pdk2:NM_001361915:exon4:c.A239C:p.D80A,Pdk2:NM_133667:exon4:c.A431C:p.D144A"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.389308508	2	0.9829552	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	97343273	DC1638tail	autochthonous	sgMsh2	97343273	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	79	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon9:c.T1749G:p.N583K	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9419521	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	97732679	DC1638tail	autochthonous	sgMsh2	97732679	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	255	50	12	0.24	exonic	Pip4k2b	nonsynonymous SNV	Pip4k2b:NM_054051:exon2:c.T236G:p.V79G	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	6.14E-09	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	98204337	DC1638tail	autochthonous	sgMsh2	98204337	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	120	36	10	0.277777778	exonic	Cdk12	nonsynonymous SNV	"Cdk12:NM_001109626:exon1:c.A970C:p.S324R,Cdk12:NM_001109628:exon1:c.A970C:p.S324R,Cdk12:NM_026952:exon1:c.A970C:p.S324R"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.672878903	2	0.8626943	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	98685953	DC1638tail	autochthonous	sgMsh2	98685953	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	74	272	6	0.022058824	exonic	Psmd3	nonsynonymous SNV	Psmd3:NM_009439:exon3:c.A419C:p.D140A	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.5380949	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	98756167	DC1638tail	autochthonous	sgMsh2	98756167	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	67	67	1	0.014925373	exonic	Thra	nonsynonymous SNV	"Thra:NM_001313983:exon3:c.G113T:p.S38I,Thra:NM_178060:exon3:c.G113T:p.S38I"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.7806199	AGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	98800280	DC1638tail	autochthonous	sgMsh2	98800280	T	C	SNV	Mutect2;Vardict	2	0.048	88	161	6	0.037267081	exonic	Msl1	nonsynonymous SNV	"Msl1:NM_001361931:exon3:c.T1279C:p.Y427H,Msl1:NM_001361932:exon3:c.T1279C:p.Y427H,Msl1:NM_001361933:exon3:c.T589C:p.Y197H,Msl1:NM_001361934:exon3:c.T589C:p.Y197H,Msl1:NM_028722:exon3:c.T1279C:p.Y427H"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9899624	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	98822466	DC1638tail	autochthonous	sgMsh2	98822466	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	91	74	9	0.121621622	exonic	Casc3	synonymous SNV	Casc3:NM_138660:exon6:c.A705C:p.A235A	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.461402676	2	0.9981371	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	99014544	DC1638tail	autochthonous	sgMsh2	99014544	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	334	97	2	0.020618557	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon10:c.T1071C:p.N357N	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.110544391	3	1	GAT	synonymous	T	5	TTTTT	NA
DC1638T5	chr11	100014208	DC1638tail	autochthonous	sgMsh2	100014208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	89	0	0	NA	exonic	Krt33a	synonymous SNV	Krt33a:NM_027983:exon3:c.T471C:p.A157A	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.519078011	2	0.9996527	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	100420409	DC1638tail	autochthonous	sgMsh2	100420409	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	184	147	4	0.027210884	exonic	Fkbp10	synonymous SNV	"Fkbp10:NM_001163481:exon2:c.T252C:p.R84R,Fkbp10:NM_010221:exon2:c.T252C:p.R84R"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9967046	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr11	100802443	DC1638tail	autochthonous	sgMsh2	100802443	T	C	SNV	Mutect2;Vardict	2	0.026	300	13	2	0.153846154	exonic	Stat5b	nonsynonymous SNV	"Stat5b:NM_001113563:exon4:c.A371G:p.N124S,Stat5b:NM_001362682:exon4:c.A371G:p.N124S,Stat5b:NM_011489:exon4:c.A371G:p.N124S"	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	101317339	DC1638tail	autochthonous	sgMsh2	101317339	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.021	371	286	5	0.017482517	exonic	Psme3	stopgain	Psme3:NM_011192:exon3:c.T86A:p.L29X	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.100931835	3	1	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	101411972	DC1638tail	autochthonous	sgMsh2	101411972	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	192	53	2	0.037735849	exonic	Aarsd1	synonymous SNV	Aarsd1:NM_144829:exon4:c.T357A:p.A119A	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.56E-08	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	101471192	DC1638tail	autochthonous	sgMsh2	101471192	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	79	76	4	0.052631579	exonic	Rnd2	synonymous SNV	Rnd2:NM_009708:exon5:c.T570G:p.R190R	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.5504708	GTC	synonymous	NA	NA	NA	NA
DC1638T5	chr11	102154579	DC1638tail	autochthonous	sgMsh2	102154579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	67	57	3	0.052631579	exonic	Tmem101	nonsynonymous SNV	Tmem101:NM_029649:exon3:c.T443C:p.L148P	11qD	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.908386519	1	0.9976962	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	105256914	DC1638tail	autochthonous	sgMsh2	105256914	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	312	166	7	0.042168675	exonic	Tlk2	nonsynonymous SNV	"Tlk2:NM_001294329:exon13:c.A1019T:p.H340L,Tlk2:NM_001294330:exon13:c.A1139T:p.H380L,Tlk2:NM_001361996:exon13:c.A1139T:p.H380L,Tlk2:NM_001112705:exon15:c.A1331T:p.H444L,Tlk2:NM_001294331:exon15:c.A1235T:p.H412L,Tlk2:NM_001294334:exon15:c.A1331T:p.H444L"	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9999992	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	106235633	DC1638tail	autochthonous	sgMsh2	106235633	A	G	SNV	Mutect2;Vardict	2	0.021	263	94	0	0	exonic	Ddx42	synonymous SNV	"Ddx42:NM_001361640:exon4:c.A384G:p.R128R,Ddx42:NM_001361644:exon4:c.A81G:p.R27R,Ddx42:NM_001361643:exon8:c.A81G:p.R27R,Ddx42:NM_028074:exon9:c.A873G:p.R291R"	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.100931835	3	1.00E-09	GAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	106320147	DC1638tail	autochthonous	sgMsh2	106320147	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	143	0	0	NA	exonic	Scn4a	synonymous SNV	Scn4a:NM_133199:exon24:c.A5043G:p.V1681V	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999843	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr11	106824717	DC1638tail	autochthonous	sgMsh2	106824717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	134	93	21	0.225806452	exonic	Smurf2	nonsynonymous SNV	"Smurf2:NM_025481:exon17:c.T1963C:p.W655R,Smurf2:NM_001362894:exon18:c.T1240C:p.W414R"	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.831486073	1	0.9998167	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	107495709	DC1638tail	autochthonous	sgMsh2	107495709	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	343	592	18	0.030405405	exonic	Psmd12	nonsynonymous SNV	Psmd12:NM_025894:exon10:c.T1105C:p.Y369H	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	3.99E-08	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	108395972	DC1638tail	autochthonous	sgMsh2	108395972	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	148	2	0	0	exonic	Apoh	nonsynonymous SNV	Apoh:NM_013475:exon2:c.T221G:p.I74S	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.437371287	2	0.9998386	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	109936744	DC1638tail	autochthonous	sgMsh2	109936744	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	118	0	0	NA	exonic	Abca8b	synonymous SNV	"Abca8b:NM_001362749:exon34:c.T4251C:p.A1417A,Abca8b:NM_013851:exon35:c.T4437C:p.A1479A"	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	0.8559965	CAG	synonymous	AGCCTC	12	AGCCTCAGCCTC	NA
DC1638T5	chr11	110136171	DC1638tail	autochthonous	sgMsh2	110136171	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	104	1	0	0	exonic	Abca9	nonsynonymous SNV	Abca9:NM_147220:exon20:c.A2631T:p.Q877H	11qE1	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	2	9.69E-09	GTT	nonsynonymous	G	5	GGGGG	NA
DC1638T5	chr11	115472890	DC1638tail	autochthonous	sgMsh2	115472890	A	G	SNV	Mutect2;Vardict	2	0.034	160	0	0	NA	exonic	Slc16a5	nonsynonymous SNV	"Slc16a5:NM_001359608:exon2:c.A419G:p.Y140C,Slc16a5:NM_001359609:exon3:c.A317G:p.Y106C,Slc16a5:NM_001080934:exon4:c.A1376G:p.Y459C,Slc16a5:NM_001359606:exon4:c.A1025G:p.Y342C"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	0.9999987	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	115590460	DC1638tail	autochthonous	sgMsh2	115590460	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	102	21	0	0	exonic	Gga3	nonsynonymous SNV	"Gga3:NM_001252067:exon8:c.T683G:p.L228R,Gga3:NM_173048:exon8:c.T683G:p.L228R"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9166928	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	115888088	DC1638tail	autochthonous	sgMsh2	115888088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	82	3	0	0	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon52:c.T7924C:p.F2642L	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.706522848	2	0.5948862	CTT	nonsynonymous	TGGC	9	TGGCTGGCT	NA
DC1638T5	chr11	116221023	DC1638tail	autochthonous	sgMsh2	116221023	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	65	14	1	0.071428571	exonic	Evpl	nonsynonymous SNV	Evpl:NM_025276:exon22:c.A5840C:p.D1947A	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.456596399	2	0.9844905	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	116347446	DC1638tail	autochthonous	sgMsh2	116347446	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	113	8	0	0	exonic	Rnf157	nonsynonymous SNV	Rnf157:NM_027258:exon15:c.A1591T:p.T531S	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.360470841	2	0.8773027	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	116601697	DC1638tail	autochthonous	sgMsh2	116601697	A	C	SNV	Mutect2;Vardict	2	0.055	98	54	3	0.055555556	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon12:c.T1364G:p.I455S,Rhbdf2:NM_172572:exon12:c.T1364G:p.I455S"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9649741	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	119272939	DC1638tail	autochthonous	sgMsh2	119272939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	142	103	6	0.058252427	exonic	Gaa	nonsynonymous SNV	"Gaa:NM_001159324:exon3:c.T616C:p.S206P,Gaa:NM_008064:exon3:c.T616C:p.S206P"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.605591013	2	0.9986442	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	120271368	DC1638tail	autochthonous	sgMsh2	120271368	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	94	16	0	0	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.A491G:p.Y164C	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9753693	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	120361835	DC1638tail	autochthonous	sgMsh2	120361835	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	68	0	0	NA	exonic	Fscn2	nonsynonymous SNV	Fscn2:NM_172802:exon1:c.A127C:p.K43Q	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.437371287	2	0.9756918	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	120488376	DC1638tail	autochthonous	sgMsh2	120488376	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	111	545	68	0.124770642	exonic	Mrpl12	nonsynonymous SNV	Mrpl12:NM_027204:exon5:c.A548G:p.E183G	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9964535	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr11	120497389	DC1638tail	autochthonous	sgMsh2	120497389	A	C	SNV	Mutect2;Vardict	2	0.05	91	123	0	0	exonic	Slc25a10	synonymous SNV	Slc25a10:NM_013770:exon9:c.A630C:p.G210G	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9861943	GAT	synonymous	NA	NA	NA	NA
DC1638T5	chr11	120654412	DC1638tail	autochthonous	sgMsh2	120654412	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	81	0	0	NA	exonic	Notum	synonymous SNV	"Notum:NM_001382269:exon12:c.T1320A:p.P440P,Notum:NM_175263:exon12:c.T1320A:p.P440P"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.615203569	2	0.982777	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr11	121225869	DC1638tail	autochthonous	sgMsh2	121225869	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	78	70	13	0.185714286	exonic	Cybc1	nonsynonymous SNV	"Cybc1:NM_001252548:exon5:c.T233G:p.V78G,Cybc1:NM_001252549:exon5:c.T233G:p.V78G,Cybc1:NM_001254735:exon5:c.T368G:p.V123G,Cybc1:NM_144832:exon5:c.T233G:p.V78G"	11qE2	chr11-69600961-121956809	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.696910293	2	0.6921648	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	8982794	DC1638tail	autochthonous	sgMsh2	8982794	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	169	18	0	0	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon6:c.T470C:p.I157T,Wdr35:NM_172470:exon6:c.T470C:p.I157T"	12qA1.1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.9834541	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	21300131	DC1638tail	autochthonous	sgMsh2	21300131	A	C	SNV	Mutect2;Vardict	2	0.045	95	66	6	0.090909091	exonic	Cpsf3	nonsynonymous SNV	"Cpsf3:NM_001364372:exon8:c.A490C:p.T164P,Cpsf3:NM_001364373:exon8:c.A850C:p.T284P,Cpsf3:NM_018813:exon8:c.A850C:p.T284P"	12qA1.3	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9964203	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	28658268	DC1638tail	autochthonous	sgMsh2	28658268	G	A	SNV	Mutect2;Vardict	2	0.046	137	32	0	0	exonic	Rnaseh1	synonymous SNV	"Rnaseh1:NM_001286865:exon7:c.G666A:p.E222E,Rnaseh1:NM_011275:exon7:c.G744A:p.E248E"	12qA2	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9994543	AGC	synonymous	CTCA	8	CTCACTCA	NA
DC1638T5	chr12	29999206	DC1638tail	autochthonous	sgMsh2	29999206	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	173	33	5	0.151515152	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon15:c.T1870G:p.S624A	12qA2	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.8142404	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	54067852	DC1638tail	autochthonous	sgMsh2	54067852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	97	0	0	NA	exonic	Npas3	nonsynonymous SNV	"Npas3:NM_001370960:exon11:c.A1550G:p.N517S,Npas3:NM_001370963:exon11:c.A1553G:p.N518S,Npas3:NM_001370961:exon12:c.A1649G:p.N550S,Npas3:NM_001370962:exon12:c.A1634G:p.N545S,Npas3:NM_013780:exon12:c.A1643G:p.N548S,Npas3:NM_001370964:exon13:c.A1688G:p.N563S"	12qC1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	2	0.9998157	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	59007059	DC1638tail	autochthonous	sgMsh2	59007059	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	119	79	1	0.012658228	exonic	Sec23a	nonsynonymous SNV	"Sec23a:NM_001361956:exon2:c.T152C:p.L51P,Sec23a:NM_009147:exon2:c.T152C:p.L51P"	12qC1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9734256	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	64983407	DC1638tail	autochthonous	sgMsh2	64983407	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	72	20	1	0.05	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon6:c.A2984T:p.D995V,Togaram1:NM_177805:exon6:c.A2984T:p.D995V"	12qC1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.456596399	2	0.9906641	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	71075410	DC1638tail	autochthonous	sgMsh2	71075410	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.524	41	15	5	0.333333333	exonic	Arid4a	frameshift deletion	Arid4a:NM_001081195:exon20:c.2564delA:p.K857Sfs*1	12qC2	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	GAA	frameshift	AGAA	9	AGAAAGAAA	-1
DC1638T5	chr12	80173021	DC1638tail	autochthonous	sgMsh2	80173021	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	62	809	48	0.059332509	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon17:c.A2075T:p.H692L,Actn1:NM_001379075:exon17:c.A2075T:p.H692L,Actn1:NM_001379076:exon17:c.A1880T:p.H627L,Actn1:NM_134156:exon17:c.A2075T:p.H692L"	12qC3	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9697811	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	80173046	DC1638tail	autochthonous	sgMsh2	80173046	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	60	924	42	0.045454545	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon17:c.A2050C:p.K684Q,Actn1:NM_001379075:exon17:c.A2050C:p.K684Q,Actn1:NM_001379076:exon17:c.A1855C:p.K619Q,Actn1:NM_134156:exon17:c.A2050C:p.K684Q"	12qC3	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.432565009	2	0.9542139	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	85149737	DC1638tail	autochthonous	sgMsh2	85149737	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	105	2	0	0	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364315:exon2:c.T152C:p.V51A,Rps6kl1:NM_001364316:exon2:c.T152C:p.V51A,Rps6kl1:NM_001364317:exon2:c.T152C:p.V51A,Rps6kl1:NM_146244:exon2:c.T152C:p.V51A"	12qD1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9939417	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	100325706	DC1638tail	autochthonous	sgMsh2	100325706	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	61	19	2	0.105263158	exonic	Ttc7b	synonymous SNV	"Ttc7b:NM_001033213:exon19:c.A2148G:p.T716T,Ttc7b:NM_001374711:exon20:c.A2199G:p.T733T"	12qE	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.418146176	2	0.9332455	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr12	102742408	DC1638tail	autochthonous	sgMsh2	102742408	T	G	SNV	Mutect2;Vardict	2	0.044	118	24	0	0	exonic	Moap1	nonsynonymous SNV	"Moap1:NM_001142937:exon2:c.A881C:p.Q294P,Moap1:NM_022323:exon2:c.A881C:p.Q294P"	12qE	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9992138	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	110692610	DC1638tail	autochthonous	sgMsh2	110692610	A	-	Deletion	Mutect2;Vardict	2	0.036	151	39	0	0	exonic	Hsp90aa1	frameshift deletion	Hsp90aa1:NM_010480:exon9:c.1752delT:p.E585Kfs*9	12qF1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	NA	NA	CAA	frameshift	NA	NA	NA	-1
DC1638T5	chr12	110868610	DC1638tail	autochthonous	sgMsh2	110868610	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	72	10	1	0.1	exonic	Zfp839	synonymous SNV	"Zfp839:NM_001199785:exon7:c.T2070G:p.A690A,Zfp839:NM_028365:exon8:c.T2298G:p.A766A"	12qF1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.913192797	1	0.998898	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr12	111251197	DC1638tail	autochthonous	sgMsh2	111251197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.569	163	16	2	0.125	exonic	Traf3	frameshift deletion	Traf3:NM_011632:exon8:c.716delT:p.Q241Rfs*18	12qF1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr12	111411780	DC1638tail	autochthonous	sgMsh2	111411780	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	35	1	0	0	exonic	Lbhd2	nonsynonymous SNV	"Lbhd2:NM_001101503:exon4:c.A280C:p.S94R,Lbhd2:NM_001358956:exon4:c.A280C:p.S94R"	12qF1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.982286	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr12	112657116	DC1638tail	autochthonous	sgMsh2	112657116	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	54	316	55	0.174050633	exonic	Akt1	synonymous SNV	"Akt1:NM_001165894:exon10:c.T909A:p.G303G,Akt1:NM_001331107:exon10:c.T909A:p.G303G,Akt1:NM_009652:exon10:c.T909A:p.G303G"	12qF1	chr12-3501831-119465464	3	2	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.65846007	2	0.8867471	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr13	3575118	DC1638tail	autochthonous	sgMsh2	3575118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	245	42	6	0.142857143	exonic	Tasor2	frameshift deletion	"Tasor2:NM_001360838:exon14:c.4501delA:p.T1501Lfs*29,Tasor2:NM_134063:exon14:c.4831delA:p.T1611Lfs*29"	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	NA	NA	GTT	frameshift	NA	NA	NA	-1
DC1638T5	chr13	3590040	DC1638tail	autochthonous	sgMsh2	3590040	G	A	SNV	Mutect2;Vardict	2	0.037	116	32	1	0.03125	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon10:c.C1096T:p.R366C,Tasor2:NM_134063:exon10:c.C1096T:p.R366C"	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9998866	CGG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	9143804	DC1638tail	autochthonous	sgMsh2	9143804	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	264	127	22	0.173228346	exonic	Larp4b	frameshift deletion	"Larp4b:NM_001311117:exon6:c.487delA:p.T165Hfs*31,Larp4b:NM_172585:exon6:c.487delA:p.T165Hfs*31"	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr13	11687965	DC1638tail	autochthonous	sgMsh2	11687965	T	-	Deletion	Mutect2;Vardict	2	0.04	188	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon59:c.8636delA:p.K2879Rfs*32	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	NA	NA	CTT	frameshift	NA	NA	NA	-1
DC1638T5	chr13	13365146	DC1638tail	autochthonous	sgMsh2	13365146	A	G	SNV	Mutect2;Vardict	2	0.045	305	285	5	0.01754386	exonic	Gpr137b	nonsynonymous SNV	Gpr137b:NM_031999:exon4:c.T692C:p.L231P	13qA1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	23184339	DC1638tail	autochthonous	sgMsh2	23184339	C	T	SNV	Mutect2;Vardict	2	0.017	448	0	0	NA	exonic	Vmn1r220	synonymous SNV	Vmn1r220:NM_134237:exon1:c.G186A:p.L62L	13qA3.1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.081706724	3	1	GCA	synonymous	NA	NA	NA	NA
DC1638T5	chr13	24998982	DC1638tail	autochthonous	sgMsh2	24998982	G	A	SNV	Mutect2;Vardict	2	0.049	86	35	0	0	exonic	Mrs2	nonsynonymous SNV	Mrs2:NM_001013389:exon6:c.C635T:p.P212L	13qA3.1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9863914	GGG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	27438562	DC1638tail	autochthonous	sgMsh2	27438562	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	245	0	0	NA	exonic	Prl8a6	synonymous SNV	"Prl8a6:NM_001271378:exon1:c.C27T:p.H9H,Prl8a6:NM_001271379:exon1:c.C27T:p.H9H,Prl8a6:NM_011167:exon1:c.C27T:p.H9H"	13qA3.1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9999725	AGT	synonymous	NA	NA	NA	NA
DC1638T5	chr13	35969342	DC1638tail	autochthonous	sgMsh2	35969342	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	80	0	0	NA	exonic	Ppp1r3g	synonymous SNV	Ppp1r3g:NM_029628:exon2:c.T744C:p.R248R	13qA3.3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	0.998016	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr13	38187821	DC1638tail	autochthonous	sgMsh2	38187821	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	229	49	2	0.040816327	exonic	Dsp	nonsynonymous SNV	Dsp:NM_023842:exon19:c.A2747G:p.D916G	13qA3.3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9999907	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	38188474	DC1638tail	autochthonous	sgMsh2	38188474	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	243	55	0	0	exonic	Dsp	stopgain	Dsp:NM_023842:exon20:c.A2854T:p.K952X	13qA3.3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9999913	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	41338726	DC1638tail	autochthonous	sgMsh2	41338726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	159	141	18	0.127659574	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon2:c.A307G:p.T103A,Nedd9:NM_001111324:exon3:c.A307G:p.T103A"	13qA3.3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.653653792	2	0.9689572	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	48579809	DC1638tail	autochthonous	sgMsh2	48579809	T	C	SNV	Mutect2;Vardict	2	0.04	173	27	0	0	exonic	Ptpdc1	nonsynonymous SNV	"Ptpdc1:NM_001374755:exon9:c.A2315G:p.Y772C,Ptpdc1:NM_207232:exon10:c.A2171G:p.Y724C,Ptpdc1:NM_001301781:exon11:c.A2354G:p.Y785C"	13qA5	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999936	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	49051524	DC1638tail	autochthonous	sgMsh2	49051524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon25:c.A5762G:p.H1921R,Wnk2:NM_001290313:exon25:c.A5762G:p.H1921R"	13qA5	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	0.9553316	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	49433863	DC1638tail	autochthonous	sgMsh2	49433863	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	240	56	6	0.107142857	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon4:c.A407C:p.Q136P,Ippk:NM_199056:exon4:c.A260C:p.Q87P"	13qA5	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9999991	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	52633040	DC1638tail	autochthonous	sgMsh2	52633040	A	-	Deletion	Mutect2;Vardict	2	0.055	124	11	0	0	exonic	Syk	frameshift deletion	"Syk:NM_001198977:exon9:c.1138delA:p.K381Rfs*5,Syk:NM_011518:exon9:c.1138delA:p.K381Rfs*5"	13qA5	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr13	55543528	DC1638tail	autochthonous	sgMsh2	55543528	T	C	SNV	Mutect2;Vardict	2	0.063	102	33	0	0	exonic	Fam193b	nonsynonymous SNV	Fam193b:NM_145382:exon8:c.A1420G:p.T474A	13qB1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7972224	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	56635609	DC1638tail	autochthonous	sgMsh2	56635609	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	133	235	1	0.004255319	exonic	Tgfbi	synonymous SNV	Tgfbi:NM_009369:exon13:c.T1722G:p.G574G	13qB1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.973918	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr13	59715560	DC1638tail	autochthonous	sgMsh2	59715560	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	156	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.T521G:p.L174R	13qB2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.672878903	2	0.8728798	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	59717359	DC1638tail	autochthonous	sgMsh2	59717359	A	T	SNV	Mutect2;Vardict	2	0.025	253	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A2320T:p.R774W	13qB2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	59726732	DC1638tail	autochthonous	sgMsh2	59726732	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	204	0	0	NA	exonic	Spata31d1d	synonymous SNV	Spata31d1d:NM_177711:exon4:c.A2988G:p.Q996Q	13qB2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999976	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr13	63512046	DC1638tail	autochthonous	sgMsh2	63512046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	53	35	2	0.057142857	exonic	Ptch1	synonymous SNV	"Ptch1:NM_001328514:exon23:c.T3636C:p.P1212P,Ptch1:NM_008957:exon23:c.T3792C:p.P1264P"	13qB3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.682491459	2	0.8055166	GAG	synonymous	NA	NA	NA	NA
DC1638T5	chr13	68584651	DC1638tail	autochthonous	sgMsh2	68584651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	131	27	3	0.111111111	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.T1090C:p.C364R,Fastkd3:NM_027123:exon2:c.T1090C:p.C364R"	13qB3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.47582151	2	0.9999661	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	70602194	DC1638tail	autochthonous	sgMsh2	70602194	A	G	SNV	Mutect2;Vardict	2	0.03	177	70	5	0.071428571	exonic	Ice1	synonymous SNV	Ice1:NM_144837:exon13:c.T5772C:p.F1924F	13qC1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	0.9999999	TAA	synonymous	NA	NA	NA	NA
DC1638T5	chr13	74164556	DC1638tail	autochthonous	sgMsh2	74164556	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	221	0	0	NA	exonic	Slc9a3	synonymous SNV	Slc9a3:NM_001081060:exon14:c.T2088C:p.P696P	13qC1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	1.07E-08	CTA	synonymous	NA	NA	NA	NA
DC1638T5	chr13	77043778	DC1638tail	autochthonous	sgMsh2	77043778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.098	206	33	3	0.090909091	exonic	Slf1	stopgain	Slf1:NM_134071:exon21:c.2936delT:p.L979fs*0	13qC1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.471015232	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
DC1638T5	chr13	77327969	DC1638tail	autochthonous	sgMsh2	77327969	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	167	11	1	0.090909091	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon17:c.A3396C:p.K1132N	13qC1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	2	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	81520711	DC1638tail	autochthonous	sgMsh2	81520711	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	257	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon33:c.A7725G:p.V2575V	13qC3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9999976	ATA	synonymous	NA	NA	NA	NA
DC1638T5	chr13	92468106	DC1638tail	autochthonous	sgMsh2	92468106	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	104	16	1	0.0625	exonic	Fam151b	nonsynonymous SNV	Fam151b:NM_001163627:exon4:c.A374C:p.Q125P	13qC3	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.6111286	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	95604665	DC1638tail	autochthonous	sgMsh2	95604665	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	134	1155	236	0.204329004	exonic	F2r	nonsynonymous SNV	F2r:NM_010169:exon2:c.A361C:p.S121R	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9999944	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	99971842	DC1638tail	autochthonous	sgMsh2	99971842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	103	23	3	0.130434783	exonic	Mccc2	nonsynonymous SNV	Mccc2:NM_030026:exon8:c.T740C:p.V247A	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.466208954	2	0.9994186	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	100222635	DC1638tail	autochthonous	sgMsh2	100222635	A	C	SNV	Mutect2;Vardict	2	0.027	290	1	0	0	exonic	Naip5	nonsynonymous SNV	Naip5:NM_010870:exon10:c.T2092G:p.L698V	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	100541069	DC1638tail	autochthonous	sgMsh2	100541069	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	201	58	1	0.017241379	exonic	Ocln	nonsynonymous SNV	"Ocln:NM_001360536:exon2:c.T49A:p.F17I,Ocln:NM_001360537:exon2:c.T49A:p.F17I,Ocln:NM_001360538:exon2:c.T49A:p.F17I,Ocln:NM_008756:exon2:c.T49A:p.F17I"	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	4.99E-08	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	100612377	DC1638tail	autochthonous	sgMsh2	100612377	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	129	32	1	0.03125	exonic	Marveld2	nonsynonymous SNV	Marveld2:NM_001038602:exon2:c.A193G:p.S65G	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9978328	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	100785872	DC1638tail	autochthonous	sgMsh2	100785872	T	G	SNV	Mutect2;MuSe;Vardict	3	0.116	244	8	1	0.125	exonic	Ccnb1	nonsynonymous SNV	Ccnb1:NM_172301:exon2:c.A53C:p.K18T	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	2	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	104187616	DC1638tail	autochthonous	sgMsh2	104187616	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	199	42	1	0.023809524	exonic	Trim23	synonymous SNV	"Trim23:NM_001361538:exon4:c.T582C:p.G194G,Trim23:NM_001361539:exon4:c.T582C:p.G194G"	13qD1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	0.9999999	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr13	107726981	DC1638tail	autochthonous	sgMsh2	107726981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	153	23	2	0.086956522	exonic	Zswim6	synonymous SNV	Zswim6:NM_145456:exon18:c.A3075G:p.A1025A	13qD2.1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	2	0.999999	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr13	107743537	DC1638tail	autochthonous	sgMsh2	107743537	T	-	Deletion	Strelka2;Vardict	2	0.1084	203	23	0	0	exonic	Zswim6	frameshift deletion	Zswim6:NM_145456:exon11:c.1809delA:p.E604Sfs*6	13qD2.1	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.521000522	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
DC1638T5	chr13	111756039	DC1638tail	autochthonous	sgMsh2	111756039	A	G	SNV	Mutect2;Vardict	2	0.041	105	24	0	0	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon14:c.T2681C:p.L894P	13qD2.2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9992682	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	112941748	DC1638tail	autochthonous	sgMsh2	112941748	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	64	17	1	0.058823529	exonic	Dhx29	nonsynonymous SNV	Dhx29:NM_172594:exon8:c.A977G:p.K326R	13qD2.2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.331633174	3	0.5271131	AAG	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr13	114877726	DC1638tail	autochthonous	sgMsh2	114877726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	228	346	5	0.014450867	exonic	Itga2	nonsynonymous SNV	Itga2:NM_008396:exon7:c.A665G:p.N222S	13qD2.2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr13	116303061	DC1638tail	autochthonous	sgMsh2	116303061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	158	0	0	NA	exonic	Isl1	synonymous SNV	Isl1:NM_021459:exon4:c.A750G:p.Q250Q	13qD2.2	chr13-3554284-119495179	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9999994	GTT	synonymous	TGC	11	TGCTGCTGCTG	NA
DC1638T5	chr14	16241863	DC1638tail	autochthonous	sgMsh2	16241863	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	155	22	3	0.136363636	exonic	Oxsm	nonsynonymous SNV	"Oxsm:NM_001359883:exon2:c.T905A:p.I302N,Oxsm:NM_027695:exon2:c.T905A:p.I302N,Oxsm:NM_001359882:exon3:c.T905A:p.I302N"	14qA2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.620009846	2	0.997436	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	20840991	DC1638tail	autochthonous	sgMsh2	20840991	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	162	310	11	0.035483871	exonic	Plau	nonsynonymous SNV	Plau:NM_008873:exon10:c.T1022C:p.L341P	14qA3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.8055085	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	21838431	DC1638tail	autochthonous	sgMsh2	21838431	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	213	703	105	0.149359886	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon7:c.T400A:p.C134S	14qA3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.47582151	2	3.77E-08	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	27497405	DC1638tail	autochthonous	sgMsh2	27497405	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.03	256	27	0	0	exonic	Ccdc66	frameshift deletion	Ccdc66:NM_177111:exon7:c.861delA:p.K287Nfs*10	14qA3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1638T5	chr14	30896602	DC1638tail	autochthonous	sgMsh2	30896602	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	95	240	0	0	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.T1969A:p.S657T,Itih4:NM_001289632:exon16:c.T1969A:p.S657T,Itih4:NM_001289633:exon16:c.T1969A:p.S657T,Itih4:NM_018746:exon16:c.T1969A:p.S657T"	14qB	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.749779349	1	0.8611596	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	31141596	DC1638tail	autochthonous	sgMsh2	31141596	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	96	13	0	0	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon58:c.T6208A:p.C2070S	14qB	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9966619	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	32209562	DC1638tail	autochthonous	sgMsh2	32209562	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	214	50	0	0	exonic	Parg	nonsynonymous SNV	"Parg:NM_001359915:exon3:c.T889C:p.S297P,Parg:NM_001374221:exon3:c.T820C:p.S274P,Parg:NM_011960:exon3:c.T1138C:p.S380P"	14qB	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.13E-09	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	47289839	DC1638tail	autochthonous	sgMsh2	47289839	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	185	59	9	0.152542373	exonic	Socs4	nonsynonymous SNV	Socs4:NM_080843:exon2:c.A230G:p.H77R	14qC1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.639234958	2	0.9937337	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	47529577	DC1638tail	autochthonous	sgMsh2	47529577	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	148	63	0	0	exonic	Fbxo34	nonsynonymous SNV	"Fbxo34:NM_030236:exon2:c.A546G:p.I182M,Fbxo34:NM_001146086:exon3:c.A393G:p.I131M,Fbxo34:NM_001146085:exon4:c.A393G:p.I131M"	14qC1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9979794	TAG	nonsynonymous	ATAGG	10	ATAGGATAGG	NA
DC1638T5	chr14	51906562	DC1638tail	autochthonous	sgMsh2	51906562	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	254	80	20	0.25	exonic	Ndrg2	synonymous SNV	"Ndrg2:NM_001145959:exon14:c.C858A:p.P286P,Ndrg2:NM_001360270:exon14:c.C867A:p.P289P,Ndrg2:NM_001360271:exon14:c.C858A:p.P286P,Ndrg2:NM_001360272:exon14:c.C858A:p.P286P,Ndrg2:NM_001360276:exon14:c.C858A:p.P286P,Ndrg2:NM_001360264:exon15:c.C909A:p.P303P,Ndrg2:NM_001360265:exon15:c.C900A:p.P300P,Ndrg2:NM_001360266:exon15:c.C900A:p.P300P,Ndrg2:NM_001360269:exon15:c.C900A:p.P300P,Ndrg2:NM_001360273:exon15:c.C858A:p.P286P,Ndrg2:NM_001360274:exon15:c.C858A:p.P286P,Ndrg2:NM_013864:exon15:c.C900A:p.P300P,Ndrg2:NM_001360267:exon16:c.C900A:p.P300P,Ndrg2:NM_001360268:exon16:c.C900A:p.P300P"	14qC1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	1	CGG	synonymous	NA	NA	NA	NA
DC1638T5	chr14	52140698	DC1638tail	autochthonous	sgMsh2	52140698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	92	0	0	NA	exonic	Rpgrip1	nonsynonymous SNV	"Rpgrip1:NM_001168515:exon13:c.A1502G:p.Q501R,Rpgrip1:NM_023879:exon13:c.A1502G:p.Q501R"	14qC2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.8527572	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	55100696	DC1638tail	autochthonous	sgMsh2	55100696	T	A	SNV	Mutect2;Vardict	2	0.045	95	23	0	0	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon17:c.A1173T:p.E391D,Ap1g2:NM_007455:exon18:c.A1815T:p.E605D"	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9964203	CTT	nonsynonymous	GGGCT	10	GGGCTGGGCT	NA
DC1638T5	chr14	55619196	DC1638tail	autochthonous	sgMsh2	55619196	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	167	10	0	0	exonic	Rec8	nonsynonymous SNV	"Rec8:NM_001360389:exon4:c.T17G:p.L6R,Rec8:NM_020002:exon5:c.T344G:p.L115R"	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999214	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	55630861	DC1638tail	autochthonous	sgMsh2	55630861	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	105	140	6	0.042857143	exonic	Ipo4	nonsynonymous SNV	"Ipo4:NM_001360078:exon15:c.A1478T:p.K493I,Ipo4:NM_024267:exon15:c.A1478T:p.K493I"	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9897534	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	55749345	DC1638tail	autochthonous	sgMsh2	55749345	T	C	SNV	Mutect2;Vardict	2	0.043	138	109	1	0.009174312	exonic	Nop9	synonymous SNV	Nop9:NM_026403:exon3:c.T711C:p.T237T	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9998174	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr14	55767543	DC1638tail	autochthonous	sgMsh2	55767543	T	C	SNV	Mutect2;Vardict	2	0.03	183	6	0	0	exonic	Ltb4r1	nonsynonymous SNV	Ltb4r1:NM_008519:exon2:c.T302C:p.I101T	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	3.41E-08	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	56386203	DC1638tail	autochthonous	sgMsh2	56386203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	147	0	0	NA	exonic	Atp12a	synonymous SNV	Atp12a:NM_138652:exon19:c.A2697G:p.V899V	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.576753346	2	0.9998594	TAT	synonymous	NA	NA	NA	NA
DC1638T5	chr14	56678736	DC1638tail	autochthonous	sgMsh2	56678736	T	G	SNV	Mutect2;Vardict	2	0.031	171	68	0	0	exonic	Mphosph8	nonsynonymous SNV	"Mphosph8:NM_001360072:exon5:c.T1524G:p.D508E,Mphosph8:NM_023773:exon5:c.T1488G:p.D496E"	14qC3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	60220142	DC1638tail	autochthonous	sgMsh2	60220142	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	134	158	13	0.082278481	exonic	Nupl1	synonymous SNV	Nupl1:NM_170591:exon15:c.T1611C:p.S537S	14qD1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.5431094	2	0.9999707	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr14	63492781	DC1638tail	autochthonous	sgMsh2	63492781	A	G	SNV	Mutect2;Vardict	2	0.063	86	0	0	NA	exonic	Tdh	nonsynonymous SNV	Tdh:NM_021480:exon9:c.T1048C:p.F350L	14qD1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7766353	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	68622133	DC1638tail	autochthonous	sgMsh2	68622133	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	351	45	1	0.022222222	exonic	Adam28	nonsynonymous SNV	"Adam28:NM_001048175:exon15:c.T1630C:p.Y544H,Adam28:NM_010082:exon15:c.T1630C:p.Y544H,Adam28:NM_183366:exon15:c.T1630C:p.Y544H"	14qD1	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	69797067	DC1638tail	autochthonous	sgMsh2	69797067	G	-	Deletion	Mutect2;Vardict	2	0.105	51	12	0	0	exonic	Rhobtb2	frameshift deletion	Rhobtb2:NM_153514:exon5:c.708delC:p.K237Sfs*63	14qD2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1638T5	chr14	70308721	DC1638tail	autochthonous	sgMsh2	70308721	T	C	SNV	Mutect2;Vardict	2	0.1	42	55	3	0.054545455	exonic	Slc39a14	nonsynonymous SNV	"Slc39a14:NM_001135151:exon9:c.A1252G:p.S418G,Slc39a14:NM_001135152:exon9:c.A1252G:p.S418G,Slc39a14:NM_144808:exon9:c.A1252G:p.S418G"	14qD2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	0.9498409	CTG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
DC1638T5	chr14	70531163	DC1638tail	autochthonous	sgMsh2	70531163	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	58	21	1	0.047619048	exonic	Lgi3	synonymous SNV	Lgi3:NM_145219:exon1:c.T99C:p.P33P	14qD2	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.466208954	2	0.9805013	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr14	75724728	DC1638tail	autochthonous	sgMsh2	75724728	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	155	61	4	0.06557377	exonic	Cog3	nonsynonymous SNV	Cog3:NM_177381:exon15:c.T1702A:p.L568I	14qD3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.9281087	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	110750603	DC1638tail	autochthonous	sgMsh2	110750603	T	-	Deletion	Mutect2;Vardict	2	0.037	223	0	0	NA	exonic	Slitrk6	frameshift deletion	Slitrk6:NM_175499:exon2:c.1671delA:p.A558Pfs*10	14qE3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	NA	NA	CTT	frameshift	NA	NA	NA	-1
DC1638T5	chr14	110750760	DC1638tail	autochthonous	sgMsh2	110750760	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	268	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.T1514C:p.L505P	14qE3	chr14-3072210-123317701	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	1.06E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr14	123596591	DC1638tail	autochthonous	sgMsh2	123596591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	110	0	0	NA	exonic	Nalcn	synonymous SNV	Nalcn:NM_177393:exon3:c.A171C:p.T57T	14qE5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr15	6764291	DC1638tail	autochthonous	sgMsh2	6764291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	219	40	8	0.2	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon9:c.A765G:p.A255A	15qA1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.8319751	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr15	9462715	DC1638tail	autochthonous	sgMsh2	9462715	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	260	39	5	0.128205128	exonic	Capsl	nonsynonymous SNV	Capsl:NM_029341:exon4:c.A440C:p.K147T	15qA1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	12349403	DC1638tail	autochthonous	sgMsh2	12349403	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	184	635	35	0.05511811	exonic	Golph3	nonsynonymous SNV	Golph3:NM_025673:exon4:c.T508A:p.L170I	15qA1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9998717	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	12349575	DC1638tail	autochthonous	sgMsh2	12349575	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	250	545	9	0.016513761	exonic	Golph3	nonsynonymous SNV	Golph3:NM_025673:exon4:c.A680C:p.N227T	15qA1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.07E-09	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	12402475	DC1638tail	autochthonous	sgMsh2	12402475	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	119	1	0	0	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon13:c.A2029G:p.S677G	15qA1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9955127	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	34433043	DC1638tail	autochthonous	sgMsh2	34433043	A	T	SNV	Mutect2;Vardict	2	0.038	117	12	1	0.083333333	exonic	Matn2	synonymous SNV	Matn2:NM_001358780:exon17:c.A2592T:p.P864P	15qB3.1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9998585	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr15	36254511	DC1638tail	autochthonous	sgMsh2	36254511	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	154	102	1	0.009803922	exonic	Rnf19a	synonymous SNV	"Rnf19a:NM_001357631:exon4:c.A900G:p.P300P,Rnf19a:NM_013923:exon4:c.A900G:p.P300P"	15qB3.1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999279	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr15	37279569	DC1638tail	autochthonous	sgMsh2	37279569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	67	11	0	0	exonic	Grhl2	nonsynonymous SNV	Grhl2:NM_026496:exon4:c.T520C:p.Y174H	15qB3.1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9970898	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	55344934	DC1638tail	autochthonous	sgMsh2	55344934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	259	0	0	NA	exonic	Col14a1	synonymous SNV	"Col14a1:NM_001368422:exon5:c.T414C:p.N138N,Col14a1:NM_181277:exon5:c.T414C:p.N138N"	15qD1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999999	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr15	73146551	DC1638tail	autochthonous	sgMsh2	73146551	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	110	34	2	0.058823529	exonic	Ago2	nonsynonymous SNV	Ago2:NM_153178:exon2:c.G37A:p.A13T	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.8792579	GCA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	74751863	DC1638tail	autochthonous	sgMsh2	74751863	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	91	11	1	0.090909091	exonic	Lynx1	nonsynonymous SNV	Lynx1:NM_011838:exon2:c.T44A:p.L15Q	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9912324	CAG	nonsynonymous	CAGG	9	CAGGCAGGC	NA
DC1638T5	chr15	76455527	DC1638tail	autochthonous	sgMsh2	76455528	CT	AC	DBS	Mutect2;Vardict	2	0.044	179	153	2	0.013071895	exonic	Bop1	nonframeshift substitution	Bop1:NM_013481:exon6:c.691_692GT:p.S231V	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	76647679	DC1638tail	autochthonous	sgMsh2	76647679	T	A	SNV	Mutect2;Vardict	2	0.037	114	138	8	0.057971014	exonic	Cyhr1	nonsynonymous SNV	Cyhr1:NM_001276321:exon4:c.A898T:p.T300S	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9998687	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	76734901	DC1638tail	autochthonous	sgMsh2	76734901	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	92	9	1	0.111111111	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_001168288:exon6:c.A2476G:p.M826V,Arhgap39:NM_198420:exon6:c.A2476G:p.M826V"	15qD3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9833273	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	78455082	DC1638tail	autochthonous	sgMsh2	78455082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	32	5	0	0	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon7:c.T659C:p.V220A,Tmprss6:NM_027902:exon7:c.T695C:p.V232A"	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	2	0.7325565	GAC	nonsynonymous	CCTGG	10	CCTGGCCTGG	NA
DC1638T5	chr15	78540034	DC1638tail	autochthonous	sgMsh2	78540034	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	77	0	0	NA	exonic	Sstr3	nonsynonymous SNV	"Sstr3:NM_001356961:exon2:c.C512T:p.A171V,Sstr3:NM_009218:exon3:c.C512T:p.A171V"	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.648847514	2	0.9336313	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	79252468	DC1638tail	autochthonous	sgMsh2	79252468	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	9	0	0	NA	exonic	Slc16a8	nonsynonymous SNV	Slc16a8:NM_020516:exon5:c.T533A:p.L178Q	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	2	0.5089513	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	81668719	DC1638tail	autochthonous	sgMsh2	81668719	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	48	22	0	0	exonic	L3mbtl2	nonsynonymous SNV	"L3mbtl2:NM_001289711:exon3:c.T352A:p.Y118N,L3mbtl2:NM_001289712:exon3:c.T352A:p.Y118N,L3mbtl2:NM_145993:exon3:c.T352A:p.Y118N"	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9821142	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	82852503	DC1638tail	autochthonous	sgMsh2	82852503	C	T	SNV	Mutect2;Vardict	2	0.029	185	92	1	0.010869565	exonic	Tcf20	synonymous SNV	"Tcf20:NM_001114140:exon2:c.G4746A:p.Q1582Q,Tcf20:NM_013836:exon2:c.G4746A:p.Q1582Q"	15qE1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.83E-08	GCT	synonymous	TGC	11	TGCTGCTGCTG	NA
DC1638T5	chr15	84556885	DC1638tail	autochthonous	sgMsh2	84556885	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	108	0	0	NA	exonic	Rtl6	synonymous SNV	Rtl6:NM_177630:exon1:c.A309G:p.E103E	15qE2	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.8438997	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr15	84771925	DC1638tail	autochthonous	sgMsh2	84771925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	99	19	0	0	exonic	Arhgap8	nonsynonymous SNV	"Arhgap8:NM_001164628:exon12:c.T1126C:p.Y376H,Arhgap8:NM_028455:exon12:c.T1126C:p.Y376H,Arhgap8:NM_001164627:exon13:c.T1126C:p.Y376H,Arhgap8:NM_001205334:exon13:c.T1126C:p.Y376H"	15qE2	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.576753346	2	0.9984614	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	86032179	DC1638tail	autochthonous	sgMsh2	86032179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	112	18	0	0	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon1:c.T1592C:p.L531P	15qE2	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.605591013	2	0.9960612	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	89165299	DC1638tail	autochthonous	sgMsh2	89165299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	72	354	43	0.121468927	exonic	Plxnb2	synonymous SNV	"Plxnb2:NM_001284506:exon8:c.T1716C:p.D572D,Plxnb2:NM_001159521:exon9:c.T1716C:p.D572D,Plxnb2:NM_138749:exon9:c.T1716C:p.D572D"	15qE3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.706522848	2	0.6284031	TAT	synonymous	NA	NA	NA	NA
DC1638T5	chr15	98643558	DC1638tail	autochthonous	sgMsh2	98643558	A	G	SNV	Mutect2;Vardict	2	0.062	67	99	3	0.03030303	exonic	Cacnb3	nonsynonymous SNV	"Cacnb3:NM_001286226:exon12:c.A1361G:p.K454R,Cacnb3:NM_001044741:exon13:c.A1439G:p.K480R,Cacnb3:NM_001356543:exon13:c.A1436G:p.K479R,Cacnb3:NM_007581:exon13:c.A1442G:p.K481R"	15qF1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.7806199	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	101224303	DC1638tail	autochthonous	sgMsh2	101224303	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.222	18	101	9	0.089108911	exonic	Grasp	nonsynonymous SNV	Grasp:NM_019518:exon1:c.T2C:p.M1T	15qF1	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.7880843	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	101473566	DC1638tail	autochthonous	sgMsh2	101473566	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	181	0	0	NA	exonic	Krt86	nonsynonymous SNV	Krt86:NM_010667:exon1:c.T16A:p.Y6N	15qF2	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9997678	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	102298485	DC1638tail	autochthonous	sgMsh2	102298485	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	91	5	0	0	exonic	Espl1	stopgain	"Espl1:NM_001014976:exon3:c.T383A:p.L128X,Espl1:NM_001356312:exon3:c.T383A:p.L128X"	15qF3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9347399	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	102328525	DC1638tail	autochthonous	sgMsh2	102328525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	216	654	73	0.111620795	exonic	Pfdn5	nonsynonymous SNV	Pfdn5:NM_027044:exon4:c.T211C:p.Y71H	15qF3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.624816124	2	0.999248	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr15	103200802	DC1638tail	autochthonous	sgMsh2	103200802	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	264	166	3	0.018072289	exonic	Cbx5	nonsynonymous SNV	"Cbx5:NM_001076789:exon4:c.T424C:p.W142R,Cbx5:NM_001358950:exon4:c.T424C:p.W142R,Cbx5:NM_007626:exon4:c.T424C:p.W142R,Cbx5:NM_001110216:exon5:c.T424C:p.W142R"	15qF3	chr15-3341105-103525164	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	2.14E-09	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	13652652	DC1638tail	autochthonous	sgMsh2	13652652	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	196	95	3	0.031578947	exonic	Parn	nonsynonymous SNV	"Parn:NM_001358452:exon8:c.T592A:p.C198S,Parn:NM_028761:exon8:c.T592A:p.C198S"	16qA1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9999724	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	17018432	DC1638tail	autochthonous	sgMsh2	17018432	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	166	397	15	0.037783375	exonic	Mapk1	nonsynonymous SNV	"Mapk1:NM_001038663:exon3:c.T443C:p.L148P,Mapk1:NM_001357115:exon3:c.T443C:p.L148P,Mapk1:NM_011949:exon3:c.T443C:p.L148P"	16qA3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999764	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	17144028	DC1638tail	autochthonous	sgMsh2	17144028	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	121	2	0	0	exonic	Ccdc116	nonsynonymous SNV	"Ccdc116:NM_001306169:exon2:c.A55C:p.S19R,Ccdc116:NM_001373948:exon2:c.A55C:p.S19R,Ccdc116:NM_029779:exon2:c.A55C:p.S19R"	16qA3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9659839	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	17898843	DC1638tail	autochthonous	sgMsh2	17898843	A	C	SNV	Mutect2;Vardict	2	0.039	136	0	0	NA	exonic	Tssk2	nonsynonymous SNV	Tssk2:NM_009436:exon1:c.A109C:p.N37H	16qA3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.999948	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	20392590	DC1638tail	autochthonous	sgMsh2	20392590	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	98	56	7	0.125	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon11:c.T1622G:p.V541G	16qA3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.70171657	2	0.5964047	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	20688610	DC1638tail	autochthonous	sgMsh2	20688610	A	G	SNV	Mutect2;Vardict	2	0.033	163	942	13	0.013800425	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon28:c.A4191G:p.Q1397Q,Eif4g1:NM_145941:exon29:c.A4233G:p.Q1411Q"	16qB1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	0.9999993	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr16	23114469	DC1638tail	autochthonous	sgMsh2	23114469	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	258	65	4	0.061538462	exonic	Rfc4	synonymous SNV	Rfc4:NM_145480:exon9:c.T858C:p.F286F	16qB1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.04E-09	CAA	synonymous	NA	NA	NA	NA
DC1638T5	chr16	23321341	DC1638tail	autochthonous	sgMsh2	23321341	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	117	94	35	0.372340426	exonic	St6gal1	synonymous SNV	"St6gal1:NM_001252506:exon3:c.G261A:p.Q87Q,St6gal1:NM_001252505:exon4:c.G261A:p.Q87Q,St6gal1:NM_145933:exon4:c.G261A:p.Q87Q"	16qB1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	4.10E-08	AGC	synonymous	NA	NA	NA	NA
DC1638T5	chr16	28828916	DC1638tail	autochthonous	sgMsh2	28828916	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	124	0	0	NA	exonic	Mb21d2	nonsynonymous SNV	Mb21d2:NM_177718:exon2:c.T305C:p.L102P	16qB2	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9931644	TAG	nonsynonymous	AGGTCC	13	AGGTCCAGGTCCA	NA
DC1638T5	chr16	31956994	DC1638tail	autochthonous	sgMsh2	31956994	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	181	197	2	0.010152284	exonic	Ncbp2	nonsynonymous SNV	Ncbp2:NM_026554:exon4:c.T455A:p.L152Q	16qB2	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	32793536	DC1638tail	autochthonous	sgMsh2	32793536	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	252	63	2	0.031746032	exonic	Muc20	synonymous SNV	"Muc20:NM_001145874:exon2:c.T1470C:p.T490T,Muc20:NM_146071:exon2:c.T1470C:p.T490T"	16qB3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1.12E-09	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr16	32793784	DC1638tail	autochthonous	sgMsh2	32793784	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	142	73	14	0.191780822	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T1222A:p.L408I,Muc20:NM_146071:exon2:c.T1222A:p.L408I"	16qB3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9997037	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	36033316	DC1638tail	autochthonous	sgMsh2	36033316	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	248	123	3	0.024390244	exonic	Kpna1	nonsynonymous SNV	Kpna1:NM_008465:exon13:c.A1315C:p.I439L	16qB3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.03E-09	AAT	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr16	44766018	DC1638tail	autochthonous	sgMsh2	44766018	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.067	214	5	0	0	exonic	Cd200r1	nonsynonymous SNV	Cd200r1:NM_021325:exon1:c.T10C:p.F4L	16qB4	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.517419	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	44766020	DC1638tail	autochthonous	sgMsh2	44766020	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.067	214	6	0	0	exonic	Cd200r1	nonsynonymous SNV	Cd200r1:NM_021325:exon1:c.T12G:p.F4L	16qB4	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.517419	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	56260598	DC1638tail	autochthonous	sgMsh2	56260598	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.102	148	2	0	0	exonic	Impg2	frameshift deletion	Impg2:NM_174876:exon14:c.2764delA:p.N923Tfs*12	16qC1.1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.490240344	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr16	57507677	DC1638tail	autochthonous	sgMsh2	57507677	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	154	0	0	NA	exonic	Filip1l	nonsynonymous SNV	Filip1l:NM_001040397:exon3:c.A375C:p.K125N	16qC1.1	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9983902	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	59149380	DC1638tail	autochthonous	sgMsh2	59149380	T	-	Deletion	Mutect2;Vardict	2	0.028	263	0	0	NA	exonic	Olfr195	frameshift deletion	Olfr195:NM_146998:exon1:c.529delT:p.C179Vfs*18	16qC1.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	NA	NA	CTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr16	64766419	DC1638tail	autochthonous	sgMsh2	64766419	A	G	SNV	Mutect2;Vardict	2	0.025	207	233	1	0.004291845	exonic	4930453N24Rik	nonsynonymous SNV	4930453N24Rik:NM_026273:exon3:c.T941C:p.V314A	16qC1.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.27E-09	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	70401796	DC1638tail	autochthonous	sgMsh2	70401796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	253	40	1	0.025	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon3:c.A376G:p.I126V	16qC2	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.9293799	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	84965761	DC1638tail	autochthonous	sgMsh2	84965761	A	C	SNV	Mutect2;Vardict	2	0.038	170	1492	51	0.034182306	exonic	App	nonsynonymous SNV	"App:NM_001198825:exon14:c.T1862G:p.L621R,App:NM_007471:exon14:c.T1748G:p.L583R,App:NM_001198824:exon15:c.T1916G:p.L639R,App:NM_001198826:exon15:c.T1919G:p.L640R,App:NM_001198823:exon16:c.T1973G:p.L658R"	16qC3.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999967	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	87408717	DC1638tail	autochthonous	sgMsh2	87408717	T	C	SNV	Mutect2;Vardict	2	0.027	211	91	2	0.021978022	exonic	Ltn1	nonsynonymous SNV	Ltn1:NM_001081068:exon16:c.A3059G:p.N1020S	16qC3.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	1.53E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	90938256	DC1638tail	autochthonous	sgMsh2	90938256	T	C	SNV	Mutect2;Vardict	2	0.039	127	44	0	0	exonic	Synj1	nonsynonymous SNV	Synj1:NM_001164483:exon32:c.A4808G:p.D1603G	16qC3.3	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999039	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	91896336	DC1638tail	autochthonous	sgMsh2	91896336	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	199	1	0	0	exonic	Itsn1	nonsynonymous SNV	Itsn1:NM_010587:exon32:c.A4063T:p.M1355L	16qC4	chr16-3948854-96421607	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1.38E-08	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr16	97794361	DC1638tail	autochthonous	sgMsh2	97794361	T	G	SNV	Mutect2;Vardict	2	0.029	183	6	0	0	exonic	Prdm15	nonsynonymous SNV	"Prdm15:NM_001359078:exon23:c.A1757C:p.N586T,Prdm15:NM_001359077:exon24:c.A3266C:p.N1089T,Prdm15:NM_144789:exon24:c.A3344C:p.N1115T"	16qC4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	6026319	DC1638tail	autochthonous	sgMsh2	6026319	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	117	54	5	0.092592593	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001290698:exon13:c.C1783A:p.L595M,Synj2:NM_001113351:exon18:c.C2476A:p.L826M,Synj2:NM_001357665:exon18:c.C1606A:p.L536M,Synj2:NM_001357667:exon18:c.C2476A:p.L826M,Synj2:NM_011523:exon18:c.C2476A:p.L826M,Synj2:NM_001113352:exon19:c.C2731A:p.L911M,Synj2:NM_001113353:exon19:c.C2731A:p.L911M"	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.8152067	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	7746618	DC1638tail	autochthonous	sgMsh2	7746618	T	-	Deletion	Mutect2;Vardict	2	0.043	181	7	0	0	exonic	Fndc1	frameshift deletion	Fndc1:NM_001081416:exon17:c.4862delA:p.N1621Tfs*24	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr17	12919448	DC1638tail	autochthonous	sgMsh2	12919448	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	230	1063	17	0.015992474	exonic	Tcp1	nonsynonymous SNV	"Tcp1:NM_001290712:exon3:c.A230T:p.K77M,Tcp1:NM_013686:exon4:c.A377T:p.K126M"	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.14E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	13235556	DC1638tail	autochthonous	sgMsh2	13235556	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	844	0	0	NA	exonic	Smok2b	nonsynonymous SNV	Smok2b:NM_001167913:exon2:c.C602A:p.P201Q	17qA1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	2	2.12E-09	CCG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	13948927	DC1638tail	autochthonous	sgMsh2	13948927	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	299	0	0	NA	exonic	Gm7168	stopgain	Gm7168:NM_001122977:exon1:c.T555G:p.Y185X	17qA2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	13948930	DC1638tail	autochthonous	sgMsh2	13948930	T	-	Deletion	Mutect2;Vardict	2	0.033	301	0	0	NA	exonic	Gm7168	frameshift deletion	Gm7168:NM_001122977:exon1:c.558delT:p.F187Lfs*21	17qA2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	NA	NA	CTT	frameshift	NA	NA	NA	-1
DC1638T5	chr17	14956050	DC1638tail	autochthonous	sgMsh2	14956050	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	85	135	5	0.037037037	exonic	Phf10	nonsynonymous SNV	"Phf10:NM_001360983:exon4:c.T340A:p.L114I,Phf10:NM_024250:exon4:c.T340A:p.L114I"	17qA2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9596223	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	18244076	DC1638tail	autochthonous	sgMsh2	18244076	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	681	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A1951T:p.I651L	17qA3.2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	20048003	DC1638tail	autochthonous	sgMsh2	20048003	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	139	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon1:c.A203G:p.Y68C	17qA3.2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9995067	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	23996766	DC1638tail	autochthonous	sgMsh2	23996766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	75	354	21	0.059322034	exonic	Prss22	nonsynonymous SNV	Prss22:NM_133731:exon3:c.T181C:p.W61R	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.773810739	1	0.8812792	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	24699274	DC1638tail	autochthonous	sgMsh2	24699274	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	104	15	0	0	exonic	Noxo1	nonsynonymous SNV	"Noxo1:NM_001357836:exon6:c.T407C:p.V136A,Noxo1:NM_027988:exon6:c.T407C:p.V136A"	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7543655	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	24706118	DC1638tail	autochthonous	sgMsh2	24706118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	147	72	9	0.125	exonic	Tbl3	synonymous SNV	Tbl3:NM_145396:exon2:c.A90G:p.A30A	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	0.999998	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr17	24753473	DC1638tail	autochthonous	sgMsh2	24753473	T	C	SNV	Mutect2;Vardict	2	0.049	117	0	0	NA	exonic	Hs3st6	nonsynonymous SNV	Hs3st6:NM_001012402:exon1:c.T388C:p.Y130H	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9963747	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	24881012	DC1638tail	autochthonous	sgMsh2	24881012	T	A	SNV	Mutect2;Vardict	2	0.048	90	0	0	NA	exonic	Igfals	nonsynonymous SNV	"Igfals:NM_001364895:exon2:c.T1076A:p.F359Y,Igfals:NM_001364896:exon2:c.T1181A:p.F394Y,Igfals:NM_008340:exon2:c.T1076A:p.F359Y"	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9908278	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	25720665	DC1638tail	autochthonous	sgMsh2	25720665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	122	19	6	0.315789474	exonic	Chtf18	synonymous SNV	Chtf18:NM_145409:exon18:c.T2373C:p.L791L	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.56714079	2	0.9997257	CAA	synonymous	NA	NA	NA	NA
DC1638T5	chr17	25729135	DC1638tail	autochthonous	sgMsh2	25729135	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	83	60	2	0.033333333	exonic	Rpusd1	synonymous SNV	"Rpusd1:NM_001357176:exon4:c.C90T:p.D30D,Rpusd1:NM_028009:exon5:c.C477T:p.D159D"	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	8.33E-09	ACC	synonymous	NA	NA	NA	NA
DC1638T5	chr17	26121541	DC1638tail	autochthonous	sgMsh2	26121541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	131	28	0	0	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon12:c.T1898C:p.V633A	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.5431094	2	0.9999641	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	26220358	DC1638tail	autochthonous	sgMsh2	26220358	A	T	SNV	Mutect2;Vardict	2	0.036	147	133	4	0.030075188	exonic	Fam234a	nonsynonymous SNV	"Fam234a:NM_001374603:exon2:c.T191A:p.F64Y,Fam234a:NM_207217:exon2:c.T191A:p.F64Y,Fam234a:NM_001206335:exon3:c.T191A:p.F64Y,Fam234a:NM_001357894:exon3:c.T191A:p.F64Y"	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999919	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	28363759	DC1638tail	autochthonous	sgMsh2	28363759	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	93	0	0	NA	exonic	Tulp1	nonsynonymous SNV	Tulp1:NM_021478:exon5:c.A414T:p.K138N	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	0.9997611	CTT	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr17	28878498	DC1638tail	autochthonous	sgMsh2	28878498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	134	0	0	NA	exonic	Pnpla1	nonsynonymous SNV	Pnpla1:NM_001034885:exon4:c.A637G:p.M213V	17qA3.3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9997221	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	31414135	DC1638tail	autochthonous	sgMsh2	31414135	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	234	15	2	0.133333333	exonic	Pde9a	nonsynonymous SNV	"Pde9a:NM_001163748:exon2:c.T104G:p.I35S,Pde9a:NM_008804:exon2:c.T104G:p.I35S"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.519078011	2	3.37E-09	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	32359409	DC1638tail	autochthonous	sgMsh2	32359409	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	117	53	9	0.169811321	exonic	Wiz	synonymous SNV	"Wiz:NM_001372226:exon4:c.A1020C:p.A340A,Wiz:NM_001372222:exon5:c.A1410C:p.A470A,Wiz:NM_001372223:exon5:c.A1272C:p.A424A,Wiz:NM_001372224:exon5:c.A1101C:p.A367A,Wiz:NM_001372225:exon5:c.A1053C:p.A351A,Wiz:NM_011717:exon5:c.A1101C:p.A367A,Wiz:NM_212438:exon5:c.A1101C:p.A367A,Wiz:NM_001372220:exon6:c.A1491C:p.A497A,Wiz:NM_001372221:exon6:c.A1491C:p.A497A,Wiz:NM_001372219:exon7:c.A1662C:p.A554A,Wiz:NM_001372227:exon7:c.A3291C:p.A1097A"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.7096984	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr17	32537164	DC1638tail	autochthonous	sgMsh2	32537164	A	-	Deletion	Strelka2;Vardict	2	0.1429	182	55	6	0.109090909	exonic	Cyp4f16	frameshift deletion	"Cyp4f16:NM_001356303:exon2:c.166delA:p.N58Tfs*8,Cyp4f16:NM_024442:exon2:c.166delA:p.N58Tfs*8"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.686817109	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
DC1638T5	chr17	33951000	DC1638tail	autochthonous	sgMsh2	33951000	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	60	8	0	0	exonic	B3galt4	nonsynonymous SNV	B3galt4:NM_019420:exon1:c.A263T:p.N88I	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.331633174	3	0.5345405	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	34854715	DC1638tail	autochthonous	sgMsh2	34854715	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	149	182	21	0.115384615	exonic	Nelfe	nonsynonymous SNV	"Nelfe:NM_001045863:exon10:c.A950C:p.E317A,Nelfe:NM_001045864:exon10:c.A950C:p.E317A,Nelfe:NM_138580:exon10:c.A950C:p.E317A"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	2	0.9999509	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	34860311	DC1638tail	autochthonous	sgMsh2	34860311	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	109	316	4	0.012658228	exonic	Cfb	nonsynonymous SNV	"Cfb:NM_001142706:exon6:c.G869A:p.R290Q,Cfb:NM_008198:exon6:c.G869A:p.R290Q"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9848186	CCG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	35015001	DC1638tail	autochthonous	sgMsh2	35015001	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	82	255	2	0.007843137	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon27:c.T3143G:p.L1048R	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.379695952	2	0.8903349	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	35117772	DC1638tail	autochthonous	sgMsh2	35117772	T	A	SNV	Mutect2;Vardict	2	0.035	120	507	6	0.01183432	exonic	Csnk2b	nonsynonymous SNV	"Csnk2b:NM_001303445:exon6:c.A481T:p.T161S,Csnk2b:NM_001303446:exon6:c.A544T:p.T182S,Csnk2b:NM_001303476:exon6:c.A518T:p.H173L,Csnk2b:NM_009975:exon6:c.A481T:p.T161S"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999538	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	35248976	DC1638tail	autochthonous	sgMsh2	35248976	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	232	412	8	0.019417476	exonic	Ddx39b	synonymous SNV	"Ddx39b:NM_001252457:exon6:c.T642C:p.I214I,Ddx39b:NM_019693:exon6:c.T642C:p.I214I"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	8.17E-09	TTT	synonymous	T	5	TTTTT	NA
DC1638T5	chr17	35637464	DC1638tail	autochthonous	sgMsh2	35637464	A	C	SNV	Mutect2;Vardict	2	0.043	123	3	0	0	exonic	Mucl3	nonsynonymous SNV	Mucl3:NM_001033366:exon2:c.T1242G:p.H414Q	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9995633	CAT	nonsynonymous	CAG	8	CAGCAGCA	NA
DC1638T5	chr17	35650445	DC1638tail	autochthonous	sgMsh2	35650445	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	169	160	0	0	exonic	Sfta2	synonymous SNV	Sfta2:NM_001163194:exon3:c.T222G:p.T74T	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9998917	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr17	36889071	DC1638tail	autochthonous	sgMsh2	36889071	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	87	0	0	NA	exonic	Trim40	synonymous SNV	"Trim40:NM_001033235:exon2:c.G114A:p.Q38Q,Trim40:NM_001172168:exon2:c.G114A:p.Q38Q"	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9894999	GCT	synonymous	NA	NA	NA	NA
DC1638T5	chr17	37151450	DC1638tail	autochthonous	sgMsh2	37151450	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	393	0	0	NA	exonic	Olfr93	nonsynonymous SNV	Olfr93:NM_001011813:exon1:c.A521C:p.D174A	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	37483041	DC1638tail	autochthonous	sgMsh2	37483041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	250	10	0	0	exonic	H2-M2	synonymous SNV	H2-M2:NM_001347387:exon2:c.T291C:p.A97A	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	3	0.9773958	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr17	38055151	DC1638tail	autochthonous	sgMsh2	38055151	A	T	SNV	Mutect2;Strelka2	2	0.026	582	0	0	NA	exonic	Olfr129	stopgain	Olfr129:NM_146327:exon4:c.T414A:p.Y138X	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	38055153	DC1638tail	autochthonous	sgMsh2	38055153	A	G	SNV	Mutect2;Strelka2	2	0.026	582	0	0	NA	exonic	Olfr129	nonsynonymous SNV	Olfr129:NM_146327:exon4:c.T412C:p.Y138H	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1	TAG	nonsynonymous	AGTGG	10	AGTGGAGTGG	NA
DC1638T5	chr17	38274860	DC1638tail	autochthonous	sgMsh2	38274860	A	G	SNV	Mutect2;MuSe;Vardict	3	0.074	241	0	0	NA	exonic	Olfr138	nonsynonymous SNV	Olfr138:NM_130868:exon1:c.A88G:p.T30A	17qB1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	0.9859503	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	45566958	DC1638tail	autochthonous	sgMsh2	45566958	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	140	123	2	0.016260163	exonic	Slc35b2	nonsynonymous SNV	Slc35b2:NM_001357105:exon4:c.T1010G:p.F337C	17qB3	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9997685	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	46657082	DC1638tail	autochthonous	sgMsh2	46657082	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	63	46	2	0.043478261	exonic	Cul7	nonsynonymous SNV	Cul7:NM_025611:exon10:c.A2195G:p.D732G	17qC	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	3	0.5683049	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	49096385	DC1638tail	autochthonous	sgMsh2	49096385	A	G	SNV	Mutect2;Vardict	2	0.072	56	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon3:c.A1535G:p.Q512R	17qC	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	2	0.5635414	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	56107270	DC1638tail	autochthonous	sgMsh2	56107270	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	182	0	0	NA	exonic	Plin4	synonymous SNV	"Plin4:NM_001372234:exon5:c.T354C:p.G118G,Plin4:NM_020568:exon5:c.T354C:p.G118G"	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999911	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr17	56650807	DC1638tail	autochthonous	sgMsh2	56650807	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	88	2	0	0	exonic	Catsperd	nonsynonymous SNV	"Catsperd:NM_001357897:exon8:c.A167C:p.N56T,Catsperd:NM_175350:exon9:c.A713C:p.N238T"	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	0.7650083	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	57223232	DC1638tail	autochthonous	sgMsh2	57223232	T	G	SNV	Mutect2;Vardict	2	0.027	201	118	0	0	exonic	C3	synonymous SNV	C3:NM_009778:exon12:c.A1368C:p.L456L	17qD	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	2.41E-09	GTA	synonymous	GTAG	8	GTAGGTAG	NA
DC1638T5	chr17	65984033	DC1638tail	autochthonous	sgMsh2	65984033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	180	23	3	0.130434783	exonic	Ankrd12	synonymous SNV	Ankrd12:NM_001025572:exon9:c.A4404G:p.S1468S	17qE1.1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	2	0.9999945	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr17	66138226	DC1638tail	autochthonous	sgMsh2	66138226	T	C	SNV	Mutect2;Vardict	2	0.035	166	18	0	0	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon10:c.T1142C:p.V381A,Ddx11:NM_001348292:exon10:c.T1220C:p.V407A"	17qE1.1	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999987	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	74660439	DC1638tail	autochthonous	sgMsh2	74660439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	164	77	13	0.168831169	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon61:c.T12394C:p.F4132L	17qE2	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9998651	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	84569941	DC1638tail	autochthonous	sgMsh2	84569941	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	169	6	0	0	exonic	Plekhh2	nonsynonymous SNV	"Plekhh2:NM_001357986:exon9:c.T1713A:p.H571Q,Plekhh2:NM_177606:exon9:c.T1713A:p.H571Q"	17qE4	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9996111	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	86805319	DC1638tail	autochthonous	sgMsh2	86805319	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	195	102	0	0	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon3:c.T344G:p.I115S	17qE4	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9999975	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	87718638	DC1638tail	autochthonous	sgMsh2	87718638	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.655	67	6	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
DC1638T5	chr17	88645279	DC1638tail	autochthonous	sgMsh2	88645279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	89	71	5	0.070422535	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon4:c.T2183C:p.V728A	17qE4	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	0.9995462	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr17	88988523	DC1638tail	autochthonous	sgMsh2	88988523	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	98	0	0	NA	exonic	Fshr	nonsynonymous SNV	Fshr:NM_013523:exon9:c.T755G:p.L252W	17qE5	chr17-3077700-90208269	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9981349	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	4181124	DC1638tail	autochthonous	sgMsh2	4181124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	284	0	0	NA	exonic	Lyzl1	synonymous SNV	Lyzl1:NM_026092:exon4:c.T309C:p.T103T	18qA1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	2	0.6932856	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr18	12064234	DC1638tail	autochthonous	sgMsh2	12064234	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	146	18	0	0	exonic	Tmem241	nonsynonymous SNV	"Tmem241:NM_001289667:exon8:c.T218A:p.I73N,Tmem241:NM_001289666:exon10:c.T536A:p.I179N,Tmem241:NM_178801:exon10:c.T536A:p.I179N"	18qA1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9994996	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	20041472	DC1638tail	autochthonous	sgMsh2	20041472	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	189	26	0	0	exonic	Dsc2	synonymous SNV	"Dsc2:NM_001317365:exon11:c.T1626C:p.N542N,Dsc2:NM_013505:exon11:c.T1626C:p.N542N,Dsc2:NM_001317363:exon12:c.T1197C:p.N399N"	18qA2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999977	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr18	31833607	DC1638tail	autochthonous	sgMsh2	31833607	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	235	142	3	0.021126761	exonic	Wdr33	nonsynonymous SNV	"Wdr33:NM_001170966:exon6:c.A499G:p.M167V,Wdr33:NM_001170967:exon6:c.A499G:p.M167V,Wdr33:NM_001170970:exon6:c.A499G:p.M167V,Wdr33:NM_028866:exon6:c.A499G:p.M167V"	18qB1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9985575	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	36531803	DC1638tail	autochthonous	sgMsh2	36531803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	133	0	0	NA	exonic	Slc4a9	synonymous SNV	"Slc4a9:NM_001271544:exon10:c.T1362G:p.S454S,Slc4a9:NM_001271545:exon10:c.T1362G:p.S454S,Slc4a9:NM_001271546:exon10:c.T1362G:p.S454S,Slc4a9:NM_001271547:exon10:c.T1362G:p.S454S"	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	2	0.9999848	CTT	synonymous	CTCTT	10	CTCTTCTCTT	NA
DC1638T5	chr18	36533587	DC1638tail	autochthonous	sgMsh2	36533587	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	76	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_172830:exon12:c.T1487G:p.V496G,Slc4a9:NM_001271544:exon13:c.T1703G:p.V568G,Slc4a9:NM_001271545:exon13:c.T1703G:p.V568G,Slc4a9:NM_001271546:exon13:c.T1703G:p.V568G,Slc4a9:NM_001271547:exon13:c.T1703G:p.V568G"	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	2	0.9349208	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	36611826	DC1638tail	autochthonous	sgMsh2	36611826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	194	48	6	0.125	exonic	Ankhd1	synonymous SNV	Ankhd1:NM_175375:exon11:c.A1818G:p.T606T	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	4.55E-09	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr18	36682496	DC1638tail	autochthonous	sgMsh2	36682496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	185	132	19	0.143939394	exonic	Slc35a4	synonymous SNV	"Slc35a4:NM_026404:exon3:c.A378G:p.T126T,Slc35a4:NM_001083317:exon4:c.A378G:p.T126T,Slc35a4:NM_001360989:exon4:c.A378G:p.T126T"	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.615203569	2	0.9992958	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr18	36742114	DC1638tail	autochthonous	sgMsh2	36742114	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	66	16	0	0	exonic	Tmco6	nonsynonymous SNV	Tmco6:NM_028036:exon12:c.T1436C:p.L479P	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	7.93E-07	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	36749266	DC1638tail	autochthonous	sgMsh2	36749266	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	198	327	13	0.039755352	exonic	Ik	nonsynonymous SNV	Ik:NM_011879:exon7:c.A572C:p.K191T	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999988	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	36947705	DC1638tail	autochthonous	sgMsh2	36947705	T	C	SNV	Mutect2;Vardict	2	0.031	545	0	0	NA	exonic	Pcdha3	nonsynonymous SNV	Pcdha3:NM_138662:exon1:c.T1499C:p.L500S	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	37091347	DC1638tail	autochthonous	sgMsh2	37091347	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	198	0	0	NA	exonic	Pcdhac1	nonsynonymous SNV	Pcdhac1:NM_001003671:exon1:c.T1212A:p.D404E	18qB2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999995	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	37486901	DC1638tail	autochthonous	sgMsh2	37486901	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.024	459	0	0	NA	exonic	Pcdhb17	synonymous SNV	Pcdhb17:NM_053142:exon1:c.A1743G:p.E581E	18qB3	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	3	1	AAC	synonymous	NA	NA	NA	NA
DC1638T5	chr18	37982092	DC1638tail	autochthonous	sgMsh2	37982092	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	98	52	0	0	exonic	Arap3	nonsynonymous SNV	"Arap3:NM_001205336:exon20:c.C2636T:p.A879V,Arap3:NM_139206:exon20:c.C2870T:p.A957V"	18qB3	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9866772	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	38251183	DC1638tail	autochthonous	sgMsh2	38251183	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	100	50	1	0.02	exonic	Dele1	synonymous SNV	Dele1:NM_024179:exon2:c.T129C:p.T43T	18qB3	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9462018	CTA	synonymous	NA	NA	NA	NA
DC1638T5	chr18	43571925	DC1638tail	autochthonous	sgMsh2	43571925	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	180	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon6:c.A1010G:p.N337S	18qB3	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9976583	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	47248399	DC1638tail	autochthonous	sgMsh2	47248399	T	C	SNV	Mutect2;Vardict	2	0.028	196	14	0	0	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.A2915G:p.N972S,Sema6a:NM_018744:exon19:c.A3080G:p.N1027S"	18qC	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	4.77E-09	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	53218348	DC1638tail	autochthonous	sgMsh2	53218348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	208	246	27	0.109756098	exonic	Snx2	nonsynonymous SNV	"Snx2:NM_026386:exon14:c.A1497C:p.Q499H,Snx2:NM_001357463:exon15:c.A1509C:p.Q503H"	18qD1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.663266347	2	0.9543716	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	63042463	DC1638tail	autochthonous	sgMsh2	63042463	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	159	27	5	0.185185185	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon39:c.A5846C:p.E1949A	18qE1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	2	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	65155680	DC1638tail	autochthonous	sgMsh2	65155680	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	262	78	0	0	exonic	Nedd4l	frameshift deletion	"Nedd4l:NM_031881:exon7:c.82delA:p.M29Wfs*56,Nedd4l:NM_001114386:exon8:c.445delA:p.M150Wfs*56"	18qE1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr18	67477005	DC1638tail	autochthonous	sgMsh2	67477005	T	G	SNV	Mutect2;Vardict	2	0.044	124	5	0	0	exonic	Prelid3a	nonsynonymous SNV	Prelid3a:NM_144867:exon5:c.T404G:p.I135S	18qE1	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9994367	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	68272635	DC1638tail	autochthonous	sgMsh2	68272635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	275	124	24	0.193548387	exonic	Fam210a	synonymous SNV	Fam210a:NM_153794:exon3:c.A516G:p.L172L	18qE2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.63442868	2	0.9994086	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr18	70483445	DC1638tail	autochthonous	sgMsh2	70483445	A	G	SNV	Mutect2;Vardict	2	0.054	235	2	0	0	exonic	Stard6	synonymous SNV	"Stard6:NM_001289648:exon6:c.A174G:p.A58A,Stard6:NM_001289649:exon6:c.A174G:p.A58A,Stard6:NM_001289650:exon6:c.A174G:p.A58A,Stard6:NM_029019:exon6:c.A174G:p.A58A"	18qE2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9995588	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr18	74221156	DC1638tail	autochthonous	sgMsh2	74221156	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	153	115	4	0.034782609	exonic	Cxxc1	nonsynonymous SNV	"Cxxc1:NM_001378844:exon15:c.T1946C:p.I649T,Cxxc1:NM_028868:exon15:c.T1934C:p.I645T"	18qE2	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9988628	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr18	82674323	DC1638tail	autochthonous	sgMsh2	82674323	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	174	15	0	0	exonic	Zfp236	nonsynonymous SNV	"Zfp236:NM_001374229:exon4:c.A526C:p.T176P,Zfp236:NM_177832:exon4:c.A526C:p.T176P"	18qE3	chr18-3325290-89206553	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.962264	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	3717389	DC1638tail	autochthonous	sgMsh2	3717389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	108	148	27	0.182432432	exonic	1810055G02Rik	synonymous SNV	"1810055G02Rik:NM_001358256:exon4:c.A975G:p.Q325Q,1810055G02Rik:NM_001358257:exon4:c.A975G:p.Q325Q,1810055G02Rik:NM_001358258:exon4:c.A975G:p.Q325Q,1810055G02Rik:NM_028077:exon4:c.A975G:p.Q325Q"	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.523884289	2	0.9999263	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr19	3717570	DC1638tail	autochthonous	sgMsh2	3717570	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	80	172	29	0.168604651	exonic	1810055G02Rik	nonsynonymous SNV	"1810055G02Rik:NM_001358256:exon4:c.A1156T:p.M386L,1810055G02Rik:NM_001358257:exon4:c.A1156T:p.M386L,1810055G02Rik:NM_001358258:exon4:c.A1156T:p.M386L,1810055G02Rik:NM_028077:exon4:c.A1156T:p.M386L"	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	0.9989618	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	4006569	DC1638tail	autochthonous	sgMsh2	4006569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	228	13	3	0.230769231	exonic	Doc2g	synonymous SNV	Doc2g:NM_021791:exon10:c.T954G:p.G318G	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	2	0.6316281	GTC	synonymous	NA	NA	NA	NA
DC1638T5	chr19	4343068	DC1638tail	autochthonous	sgMsh2	4343068	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	162	67	0	0	exonic	Kdm2a	nonsynonymous SNV	Kdm2a:NM_001001984:exon12:c.A1258G:p.T420A	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9973122	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	5039877	DC1638tail	autochthonous	sgMsh2	5039877	T	A	SNV	Mutect2;Vardict	2	0.058	78	42	2	0.047619048	exonic	B4gat1	nonsynonymous SNV	B4gat1:NM_175383:exon1:c.T901A:p.Y301N	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.8973888	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	5492528	DC1638tail	autochthonous	sgMsh2	5492528	T	G	SNV	Mutect2;Vardict	2	0.065	72	1956	40	0.020449898	exonic	Cfl1	nonsynonymous SNV	Cfl1:NM_007687:exon2:c.T35G:p.I12S	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.6846903	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	5766308	DC1638tail	autochthonous	sgMsh2	5766308	C	T	SNV	Mutect2;Vardict	2	0.043	109	128	0	0	exonic	Scyl1	synonymous SNV	"Scyl1:NM_001361921:exon6:c.G858A:p.E286E,Scyl1:NM_001361922:exon6:c.G858A:p.E286E,Scyl1:NM_023912:exon6:c.G858A:p.E286E"	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9990151	GCT	synonymous	NA	NA	NA	NA
DC1638T5	chr19	5902446	DC1638tail	autochthonous	sgMsh2	5902446	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	139	119	17	0.142857143	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_011262:exon8:c.A821C:p.D274A,Dpf2:NM_001291078:exon9:c.A863C:p.D288A"	19qA	chr19-3491023-7197088	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.98855	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	7457476	DC1638tail	autochthonous	sgMsh2	7457476	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	273	4	0	0	exonic	Rtn3	nonsynonymous SNV	"Rtn3:NM_001003933:exon2:c.A1093G:p.I365V,Rtn3:NM_001003934:exon3:c.A1150G:p.I384V"	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9914061	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	7802290	DC1638tail	autochthonous	sgMsh2	7802290	T	C	SNV	Mutect2;Vardict	2	0.039	302	0	0	NA	exonic	Slc22a26	nonsynonymous SNV	Slc22a26:NM_146232:exon1:c.A160G:p.I54V	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	1.63E-09	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	8743104	DC1638tail	autochthonous	sgMsh2	8743104	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	335	154	4	0.025974026	exonic	Stx5a	nonsynonymous SNV	"Stx5a:NM_019829:exon3:c.T321A:p.N107K,Stx5a:NM_001167799:exon4:c.T321A:p.N107K"	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	8743413	DC1638tail	autochthonous	sgMsh2	8743413	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	180	194	3	0.015463918	exonic	Stx5a	nonsynonymous SNV	"Stx5a:NM_019829:exon4:c.T413C:p.I138T,Stx5a:NM_001167799:exon5:c.T413C:p.I138T"	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999841	ATC	nonsynonymous	ACAT	8	ACATACAT	NA
DC1638T5	chr19	8750017	DC1638tail	autochthonous	sgMsh2	8750017	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	155	199	2	0.010050251	exonic	Stx5a	nonsynonymous SNV	"Stx5a:NM_019829:exon9:c.A898G:p.T300A,Stx5a:NM_001167799:exon10:c.A898G:p.T300A"	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9999689	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	8895488	DC1638tail	autochthonous	sgMsh2	8895488	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	122	56	35	0.625	exonic	Ints5	synonymous SNV	Ints5:NM_176843:exon2:c.C810A:p.P270P	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	1.91E-08	CCT	synonymous	C	5	CCCCC	NA
DC1638T5	chr19	8897450	DC1638tail	autochthonous	sgMsh2	8897450	T	C	SNV	Mutect2;Vardict	2	0.035	124	62	2	0.032258065	exonic	Ints5	synonymous SNV	Ints5:NM_176843:exon2:c.T2772C:p.G924G	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999662	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr19	8911045	DC1638tail	autochthonous	sgMsh2	8911045	T	A	SNV	Mutect2;Vardict	2	0.03	213	247	3	0.012145749	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon12:c.T1397A:p.I466N,Ganab:NM_008060:exon13:c.T1463A:p.I488N"	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	3.16E-09	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	9991705	DC1638tail	autochthonous	sgMsh2	9991705	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	203	6	0	0	exonic	Best1	nonsynonymous SNV	Best1:NM_011913:exon6:c.A646G:p.T216A	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	4.26E-08	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	10056079	DC1638tail	autochthonous	sgMsh2	10056079	A	G	SNV	Mutect2;Vardict	2	0.038	178	225	2	0.008888889	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon9:c.A1084G:p.S362G	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999981	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	12429678	DC1638tail	autochthonous	sgMsh2	12429678	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	372	0	0	NA	exonic	Pfpl	nonsynonymous SNV	Pfpl:NM_019540:exon2:c.C1292T:p.T431I	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.9997068	ACT	nonsynonymous	TGGAA	12	TGGAATGGAATG	NA
DC1638T5	chr19	12764059	DC1638tail	autochthonous	sgMsh2	12764059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	120	15	10	0.666666667	exonic	Cntf	nonsynonymous SNV	Cntf:NM_170786:exon2:c.A436G:p.I146V	19qA	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	2.58E-08	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	21428564	DC1638tail	autochthonous	sgMsh2	21428564	A	-	Deletion	Mutect2;Vardict	2	0.04	186	121	0	0	exonic	Gda	frameshift deletion	Gda:NM_010266:exon3:c.299delT:p.L100Wfs*3	19qB	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	NA	NA	CAA	frameshift	NA	NA	NA	-1
DC1638T5	chr19	25087731	DC1638tail	autochthonous	sgMsh2	25087731	A	-	Deletion	Mutect2;Vardict	2	0.045	189	29	0	0	exonic	Dock8	frameshift deletion	Dock8:NM_028785:exon8:c.892delA:p.K299Rfs*9	19qB	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr19	29311004	DC1638tail	autochthonous	sgMsh2	29311004	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	404	273	14	0.051282051	exonic	Jak2	nonsynonymous SNV	"Jak2:NM_001048177:exon23:c.A3254G:p.N1085S,Jak2:NM_008413:exon24:c.A3254G:p.N1085S"	19qC1	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	36083737	DC1638tail	autochthonous	sgMsh2	36083737	A	G	SNV	Mutect2;Vardict	2	0.04	114	70	0	0	exonic	Rpp30	nonsynonymous SNV	Rpp30:NM_019428:exon1:c.A1G:p.M1V	19qC2	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.999689	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	38141455	DC1638tail	autochthonous	sgMsh2	38141455	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	211	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon4:c.A812G:p.Y271C,Pde6c:NM_033614:exon4:c.A812G:p.Y271C"	19qC2	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999974	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	42766725	DC1638tail	autochthonous	sgMsh2	42766725	-	TCC	Insertion	Strelka2;Vardict	2	0.2456	57	41	0	0	exonic	Hps1	nonframeshift insertion	"Hps1:NM_001362410:exon7:c.776_777insGGA:p.E258_D259insE,Hps1:NM_001346703:exon8:c.776_777insGGA:p.E258_D259insE,Hps1:NM_019424:exon8:c.776_777insGGA:p.E258_D259insE"	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	TAT	inframe	TCC	23	TCCTCCTCCTCCTCCTCCTCCTC	3
DC1638T5	chr19	44339075	DC1638tail	autochthonous	sgMsh2	44339075	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	187	0	0	NA	exonic	Scd4	nonsynonymous SNV	Scd4:NM_183216:exon4:c.T589C:p.S197P	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.999983	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	45770057	DC1638tail	autochthonous	sgMsh2	45770057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	112	187	68	0.363636364	exonic	Oga	nonsynonymous SNV	Oga:NM_023799:exon8:c.T1189C:p.Y397H	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.841098629	1	0.9994298	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	46071320	DC1638tail	autochthonous	sgMsh2	46071320	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	52	71	2	0.028169014	exonic	Pprc1	nonsynonymous SNV	"Pprc1:NM_001081214:exon10:c.T4399C:p.S1467P,Pprc1:NM_001346801:exon10:c.T4405C:p.S1469P"	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.418146176	2	0.8966649	CTC	nonsynonymous	TCC	29	TCCTCCTCCTCCTCCTCCTCTTCCTCCTC	NA
DC1638T5	chr19	46307064	DC1638tail	autochthonous	sgMsh2	46307064	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	174	359	96	0.267409471	exonic	Nfkb2	synonymous SNV	"Nfkb2:NM_001177370:exon5:c.G366T:p.V122V,Nfkb2:NM_019408:exon5:c.G366T:p.V122V,Nfkb2:NM_001177369:exon6:c.G366T:p.V122V"	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	1.00E-09	TGT	synonymous	NA	NA	NA	NA
DC1638T5	chr19	46312756	DC1638tail	autochthonous	sgMsh2	46312756	A	C	SNV	Mutect2;Vardict	2	0.164	23	10	1	0.1	exonic	Psd	synonymous SNV	"Psd:NM_001347454:exon18:c.T3021G:p.A1007A,Psd:NM_028627:exon18:c.T3018G:p.A1006A"	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.788229572	2	0.5701901	GAG	synonymous	NA	NA	NA	NA
DC1638T5	chr19	46380286	DC1638tail	autochthonous	sgMsh2	46380286	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	349	371	10	0.026954178	exonic	Actr1a	nonsynonymous SNV	"Actr1a:NM_001365070:exon7:c.A713C:p.K238T,Actr1a:NM_016860:exon7:c.A713C:p.K238T"	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	47077324	DC1638tail	autochthonous	sgMsh2	47077324	T	G	SNV	Mutect2;Vardict	2	0.025	231	15	0	0	exonic	Taf5	synonymous SNV	Taf5:NM_177342:exon6:c.T1467G:p.G489G	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.02E-09	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr19	47132833	DC1638tail	autochthonous	sgMsh2	47132833	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	108	5	0	0	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon3:c.T896A:p.L299Q	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9930138	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	47528652	DC1638tail	autochthonous	sgMsh2	47528652	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	223	54	0	0	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.T235C:p.F79L	19qC3	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	2.64E-08	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr19	53537459	DC1638tail	autochthonous	sgMsh2	53537459	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	81	216	15	0.069444444	exonic	Dusp5	synonymous SNV	Dusp5:NM_001085390:exon3:c.T531C:p.G177G	19qD2	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.6051238	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr19	56470762	DC1638tail	autochthonous	sgMsh2	56470762	T	C	SNV	Mutect2;Vardict	2	0.027	200	16	1	0.0625	exonic	Plekhs1	synonymous SNV	"Plekhs1:NM_001164263:exon3:c.T51C:p.Y17Y,Plekhs1:NM_172641:exon3:c.T51C:p.Y17Y"	19qD2	chr19-7197365-61225035	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	2.55E-09	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	13287103	DC1638tail	autochthonous	sgMsh2	13287103	A	-	Deletion	Mutect2;Vardict	2	0.038	198	7	0	0	exonic	Cubn	frameshift deletion	Cubn:NM_001081084:exon62:c.9910delT:p.S3304Pfs*16	2qA1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr2	24442953	DC1638tail	autochthonous	sgMsh2	24442953	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	70	0	0	NA	exonic	Pax8	nonsynonymous SNV	Pax8:NM_011040:exon4:c.A376G:p.S126G	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.8213288	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	25214574	DC1638tail	autochthonous	sgMsh2	25214574	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	130	0	0	NA	exonic	Stpg3	nonsynonymous SNV	Stpg3:NM_028961:exon1:c.T28A:p.F10I	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9287625	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	25303953	DC1638tail	autochthonous	sgMsh2	25303953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	79	3	0	0	exonic	Grin1	nonsynonymous SNV	"Grin1:NM_001177657:exon7:c.T1067C:p.L356P,Grin1:NM_001372561:exon7:c.T1067C:p.L356P,Grin1:NM_001372562:exon7:c.T1067C:p.L356P,Grin1:NM_008169:exon7:c.T1067C:p.L356P,Grin1:NM_001177656:exon8:c.T1130C:p.L377P,Grin1:NM_001372558:exon8:c.T1130C:p.L377P,Grin1:NM_001372559:exon8:c.T1130C:p.L377P,Grin1:NM_001372560:exon8:c.T1130C:p.L377P"	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	2	0.9683558	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	25425430	DC1638tail	autochthonous	sgMsh2	25425430	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	62	1	0	0	exonic	Fut7	synonymous SNV	"Fut7:NM_001177366:exon2:c.T699C:p.R233R,Fut7:NM_001177367:exon3:c.T558C:p.R186R,Fut7:NM_001289455:exon3:c.T558C:p.R186R,Fut7:NM_013524:exon3:c.T558C:p.R186R,Fut7:NM_001289453:exon4:c.T558C:p.R186R,Fut7:NM_001289454:exon4:c.T558C:p.R186R,Fut7:NM_001289456:exon4:c.T558C:p.R186R"	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	2	0.9918824	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	25441974	DC1638tail	autochthonous	sgMsh2	25441974	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	131	20	1	0.05	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon26:c.A4100G:p.Q1367R,Abca2:NM_007379:exon26:c.A4097G:p.Q1366R"	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9972342	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	26407988	DC1638tail	autochthonous	sgMsh2	26407988	A	C	SNV	Mutect2;Vardict	2	0.064	83	20	0	0	exonic	Inpp5e	synonymous SNV	"Inpp5e:NM_033134:exon1:c.T600G:p.A200A,Inpp5e:NM_001290437:exon2:c.T600G:p.A200A"	2qA3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7337543	TAG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	29145392	DC1638tail	autochthonous	sgMsh2	29145392	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	95	16	4	0.25	exonic	Setx	frameshift deletion	Setx:NM_198033:exon10:c.1888delA:p.N632Tfs*16	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
DC1638T5	chr2	30177470	DC1638tail	autochthonous	sgMsh2	30177470	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	79	70	1	0.014285714	exonic	Spout1	nonsynonymous SNV	Spout1:NM_172660:exon4:c.C224A:p.T75N	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.6886566	AGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	32039414	DC1638tail	autochthonous	sgMsh2	32039414	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	105	71	1	0.014084507	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon31:c.A5672C:p.D1891A	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.8398256	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	32912578	DC1638tail	autochthonous	sgMsh2	32912578	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	84	451	13	0.028824834	exonic	Niban2	nonsynonymous SNV	Niban2:NM_146119:exon5:c.T580A:p.C194S	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9817553	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	32962647	DC1638tail	autochthonous	sgMsh2	32962647	T	C	SNV	Mutect2;Vardict	2	0.052	256	92	1	0.010869565	exonic	Rpl12	nonsynonymous SNV	Rpl12:NM_009076:exon3:c.T185C:p.L62P	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9999359	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	34704189	DC1638tail	autochthonous	sgMsh2	34704189	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	78	33	2	0.060606061	exonic	Gapvd1	nonsynonymous SNV	"Gapvd1:NM_001356441:exon16:c.A2848C:p.S950R,Gapvd1:NM_025709:exon16:c.A2785C:p.S929R"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.40853362	2	0.958666	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	34773867	DC1638tail	autochthonous	sgMsh2	34773867	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	142	1492	44	0.029490617	exonic	Hspa5	nonsynonymous SNV	"Hspa5:NM_022310:exon4:c.A542G:p.Q181R,Hspa5:NM_001163434:exon5:c.A542G:p.Q181R"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9894584	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	34852636	DC1638tail	autochthonous	sgMsh2	34852636	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	288	185	4	0.021621622	exonic	Psmd5	synonymous SNV	"Psmd5:NM_001355544:exon9:c.A933G:p.L311L,Psmd5:NM_080554:exon10:c.A1455G:p.L485L"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	1.54E-08	TTA	synonymous	NA	NA	NA	NA
DC1638T5	chr2	35134066	DC1638tail	autochthonous	sgMsh2	35134066	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	195	30	0	0	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001290635:exon2:c.A103C:p.K35Q,Cntrl:NM_001379275:exon2:c.A103C:p.K35Q,Cntrl:NM_001379274:exon12:c.A1762C:p.K588Q,Cntrl:NM_012018:exon12:c.A1762C:p.K588Q"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999985	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	38354666	DC1638tail	autochthonous	sgMsh2	38354666	T	G	SNV	Mutect2;Vardict	2	0.047	87	0	0	NA	exonic	Lhx2	nonsynonymous SNV	"Lhx2:NM_001290646:exon3:c.T418G:p.F140V,Lhx2:NM_010710:exon3:c.T541G:p.F181V"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9915515	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	41458306	DC1638tail	autochthonous	sgMsh2	41458306	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	166	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon15:c.T2497A:p.C833S	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	2	0.8708257	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	44996664	DC1638tail	autochthonous	sgMsh2	44996664	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	406	47	0	0	exonic	Zeb2	nonsynonymous SNV	"Zeb2:NM_001289521:exon7:c.A2248G:p.S750G,Zeb2:NM_001355291:exon8:c.A2248G:p.S750G,Zeb2:NM_015753:exon8:c.A2248G:p.S750G,Zeb2:NM_001355288:exon9:c.A2248G:p.S750G,Zeb2:NM_001355289:exon9:c.A2248G:p.S750G,Zeb2:NM_001355290:exon10:c.A2248G:p.S750G"	2qB	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	52714887	DC1638tail	autochthonous	sgMsh2	52714887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	138	138	20	0.144927536	exonic	Stam2	nonsynonymous SNV	Stam2:NM_019667:exon7:c.A635G:p.D212G	2qC1.1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.418146176	2	0.998782	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	57108636	DC1638tail	autochthonous	sgMsh2	57108636	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	153	16	2	0.125	exonic	Nr4a2	nonsynonymous SNV	"Nr4a2:NM_001139509:exon7:c.T1465G:p.F489V,Nr4a2:NM_013613:exon7:c.T1465G:p.F489V"	2qC1.1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.38450223	2	0.9918423	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	57267982	DC1638tail	autochthonous	sgMsh2	57267982	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	253	43	1	0.023255814	exonic	Gpd2	nonsynonymous SNV	"Gpd2:NM_001145820:exon2:c.T2C:p.M1T,Gpd2:NM_010274:exon2:c.T2C:p.M1T"	2qC1.1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	2.38E-09	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	65670675	DC1638tail	autochthonous	sgMsh2	65670675	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	172	5	1	0.2	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.A180C:p.K60N,Scn2a:NM_001346679:exon2:c.A180C:p.K60N,Scn2a:NM_001346680:exon2:c.A180C:p.K60N"	2qC1.3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999397	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	65670688	DC1638tail	autochthonous	sgMsh2	65670688	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	173	3	0	0	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.A193T:p.I65F,Scn2a:NM_001346679:exon2:c.A193T:p.I65F,Scn2a:NM_001346680:exon2:c.A193T:p.I65F"	2qC1.3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999958	TAT	nonsynonymous	TTAT	8	TTATTTAT	NA
DC1638T5	chr2	67512727	DC1638tail	autochthonous	sgMsh2	67512727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	137	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A5311G:p.T1771A,Xirp2:NM_001083919:exon7:c.A5311G:p.T1771A"	2qC1.3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.346052007	2	0.8134472	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	68739391	DC1638tail	autochthonous	sgMsh2	68739391	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	162	0	0	NA	exonic	4932414N04Rik	synonymous SNV	4932414N04Rik:NM_183113:exon25:c.A1450C:p.R484R	2qC2	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.615203569	2	0.9985678	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	69707431	DC1638tail	autochthonous	sgMsh2	69707431	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	192	19	1	0.052631579	exonic	Fastkd1	nonsynonymous SNV	Fastkd1:NM_177244:exon4:c.T806G:p.F269C	2qC2	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9989967	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	75981574	DC1638tail	autochthonous	sgMsh2	75981574	T	C	SNV	Mutect2;Vardict	2	0.034	124	1	0	0	exonic	Ttc30a1	nonsynonymous SNV	Ttc30a1:NM_030188:exon1:c.A164G:p.Y55C	2qC3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	0.9999753	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	80617450	DC1638tail	autochthonous	sgMsh2	80617450	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	100	17	5	0.294117647	exonic	Dusp19	nonsynonymous SNV	Dusp19:NM_024438:exon1:c.G67A:p.V23M	2qC3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.889161408	1	0.9998599	GGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	82989919	DC1638tail	autochthonous	sgMsh2	82989919	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	221	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A15989G:p.N5330S	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	2.04E-09	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	84609562	DC1638tail	autochthonous	sgMsh2	84609562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	124	377	48	0.127320955	exonic	Ctnnd1	synonymous SNV	"Ctnnd1:NM_001085449:exon12:c.T2082C:p.G694G,Ctnnd1:NM_001355067:exon12:c.T2082C:p.G694G,Ctnnd1:NM_001085453:exon13:c.T2385C:p.G795G,Ctnnd1:NM_001355066:exon13:c.T2385C:p.G795G,Ctnnd1:NM_001085448:exon14:c.T2403C:p.G801G,Ctnnd1:NM_001085450:exon14:c.T2403C:p.G801G,Ctnnd1:NM_001355064:exon14:c.T2403C:p.G801G,Ctnnd1:NM_001355065:exon15:c.T2403C:p.G801G,Ctnnd1:NM_007615:exon15:c.T2403C:p.G801G"	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.653653792	2	0.9535947	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr2	85331291	DC1638tail	autochthonous	sgMsh2	85331291	A	-	Deletion	Mutect2;Vardict	2	0.043	330	0	0	NA	exonic	Olfr987	frameshift deletion	Olfr987:NM_001011785:exon1:c.606delT:p.F202Lfs*6	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr2	85647756	DC1638tail	autochthonous	sgMsh2	85647756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	474	0	0	NA	exonic	Olfr1002	synonymous SNV	Olfr1002:NM_146573:exon1:c.A564G:p.A188A	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	1	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	86159950	DC1638tail	autochthonous	sgMsh2	86159950	A	C	SNV	Mutect2;MuSe;Vardict	3	0.094	365	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.T419G:p.L140R	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.451790121	2	1.01E-09	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	86538699	DC1638tail	autochthonous	sgMsh2	86538699	T	C	SNV	Mutect2;Strelka2	2	0.02	386	0	0	NA	exonic	Olfr1079	nonsynonymous SNV	Olfr1079:NM_146407:exon1:c.A215G:p.D72G	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	3	1	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	86538701	DC1638tail	autochthonous	sgMsh2	86538701	T	A	SNV	Mutect2;Strelka2	2	0.02	386	0	0	NA	exonic	Olfr1079	synonymous SNV	Olfr1079:NM_146407:exon1:c.A213T:p.T71T	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	3	1	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	87049010	DC1638tail	autochthonous	sgMsh2	87049010	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	236	0	0	NA	exonic	Olfr1106	synonymous SNV	Olfr1106:NM_146752:exon1:c.A225G:p.S75S	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9999934	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	87071489	DC1638tail	autochthonous	sgMsh2	87071489	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	362	0	0	NA	exonic	Olfr1107	nonsynonymous SNV	Olfr1107:NM_146844:exon1:c.T644C:p.M215T	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	87191898	DC1638tail	autochthonous	sgMsh2	87191898	T	A	SNV	Mutect2;Vardict	2	0.029	181	0	0	NA	exonic	Olfr1112	synonymous SNV	Olfr1112:NM_146661:exon1:c.T210A:p.L70L	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	2.61E-08	TTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	87510342	DC1638tail	autochthonous	sgMsh2	87510342	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	128	0	0	NA	exonic	Pramel6	synonymous SNV	"Pramel6:NM_001356546:exon4:c.A1017G:p.V339V,Pramel6:NM_178249:exon4:c.A1017G:p.V339V,Pramel6:NM_001356544:exon5:c.A1017G:p.V339V,Pramel6:NM_001356545:exon5:c.A1017G:p.V339V"	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.7338911	TAG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	87545224	DC1638tail	autochthonous	sgMsh2	87545224	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	337	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.T319G:p.F107V	2qD	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	88865473	DC1638tail	autochthonous	sgMsh2	88865473	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	338	0	0	NA	exonic	Olfr1206	nonsynonymous SNV	Olfr1206:NM_001001810:exon1:c.T867A:p.N289K	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	88909693	DC1638tail	autochthonous	sgMsh2	88909693	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	332	0	0	NA	exonic	Olfr1209	synonymous SNV	Olfr1209:NM_146461:exon1:c.A699G:p.K233K	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	1.04E-09	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr2	89097498	DC1638tail	autochthonous	sgMsh2	89097498	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	205	0	0	NA	exonic	Olfr1220	stopgain	Olfr1220:NM_146900:exon1:c.T428A:p.L143X	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.9963048	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	89844667	DC1638tail	autochthonous	sgMsh2	89844667	A	-	Deletion	Mutect2;Vardict	2	0.039	166	0	0	NA	exonic	Olfr48	frameshift deletion	Olfr48:NM_010990:exon1:c.305delT:p.F102Sfs*10	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr2	90015531	DC1638tail	autochthonous	sgMsh2	90015531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	389	0	0	NA	exonic	Olfr1263	synonymous SNV	Olfr1263:NM_146794:exon1:c.A600G:p.S200S	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	2	1	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr2	91931373	DC1638tail	autochthonous	sgMsh2	91931373	T	-	Deletion	Strelka2;Vardict	2	0.1	90	19	0	0	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
DC1638T5	chr2	102450734	DC1638tail	autochthonous	sgMsh2	102450734	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	99	30	2	0.066666667	exonic	Fjx1	nonsynonymous SNV	Fjx1:NM_010218:exon1:c.C855G:p.D285E	2qE2	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7495572	AGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	104788245	DC1638tail	autochthonous	sgMsh2	104788245	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	238	39	1	0.025641026	exonic	Qser1	nonsynonymous SNV	Qser1:NM_001123327:exon3:c.A1951G:p.M651V	2qE2	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	9.16E-09	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	118710757	DC1638tail	autochthonous	sgMsh2	118710757	T	G	SNV	Mutect2;Vardict	2	0.058	97	2	0	0	exonic	Plcb2	nonsynonymous SNV	"Plcb2:NM_001290790:exon28:c.A3098C:p.K1033T,Plcb2:NM_177568:exon29:c.A3167C:p.K1056T"	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.9278473	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	118919155	DC1638tail	autochthonous	sgMsh2	118919155	A	G	SNV	Mutect2;Vardict	2	0.1	47	44	3	0.068181818	exonic	Bahd1	synonymous SNV	Bahd1:NM_001045523:exon3:c.A1431G:p.Q477Q	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	0.9668572	AAT	synonymous	NA	NA	NA	NA
DC1638T5	chr2	119245562	DC1638tail	autochthonous	sgMsh2	119245562	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	147	263	5	0.019011407	exonic	Spint1	nonsynonymous SNV	Spint1:NM_016907:exon4:c.T638C:p.L213P	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.499852899	2	0.9999981	CTG	nonsynonymous	ACCT	8	ACCTACCT	NA
DC1638T5	chr2	121048912	DC1638tail	autochthonous	sgMsh2	121048912	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	197	2	0	0	exonic	Tgm5	nonsynonymous SNV	"Tgm5:NM_001362724:exon10:c.A940C:p.S314R,Tgm5:NM_028799:exon10:c.A1642C:p.S548R"	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999992	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	121301150	DC1638tail	autochthonous	sgMsh2	121301150	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	82	0	0	NA	exonic	Map1a	frameshift deletion	"Map1a:NM_001173506:exon4:c.1732delC:p.P579Lfs*9,Map1a:NM_032393:exon5:c.2446delC:p.P817Lfs*9"	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1638T5	chr2	122094498	DC1638tail	autochthonous	sgMsh2	122094498	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	120	45	2	0.044444444	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon12:c.T2255C:p.I752T	2qE5	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.9540608	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	126842859	DC1638tail	autochthonous	sgMsh2	126842859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	92	36	2	0.055555556	exonic	Trpm7	nonsynonymous SNV	"Trpm7:NM_001164325:exon9:c.G1128T:p.E376D,Trpm7:NM_021450:exon9:c.G1128T:p.E376D"	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.687297737	2	0.7530384	GCT	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr2	128930839	DC1638tail	autochthonous	sgMsh2	128930839	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	363	26	0	0	exonic	Zc3h8	nonsynonymous SNV	Zc3h8:NM_020594:exon6:c.A728G:p.Y243C	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9978069	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	129082025	DC1638tail	autochthonous	sgMsh2	129082025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	266	39	0	0	exonic	Ttl	synonymous SNV	Ttl:NM_027192:exon5:c.T657C:p.G219G	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.13E-09	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	130396447	DC1638tail	autochthonous	sgMsh2	130396447	T	-	Deletion	Strelka2;Vardict	2	0.1471	102	4	0	0	exonic	Cpxm1	frameshift deletion	Cpxm1:NM_019696:exon2:c.194delA:p.K65Rfs*9	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.707003476	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
DC1638T5	chr2	130591973	DC1638tail	autochthonous	sgMsh2	130591973	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	148	14	0	0	exonic	Ubox5	stopgain	"Ubox5:NM_001255994:exon6:c.A1453T:p.K485X,Ubox5:NM_080562:exon6:c.A1453T:p.K485X,Ubox5:NM_001255993:exon7:c.A1453T:p.K485X"	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9957461	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	130972286	DC1638tail	autochthonous	sgMsh2	130972286	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	222	24	1	0.041666667	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon13:c.T2151A:p.N717K	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	2.85E-08	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	131197337	DC1638tail	autochthonous	sgMsh2	131197337	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	88	74	1	0.013513514	exonic	Cdc25b	nonsynonymous SNV	"Cdc25b:NM_001111075:exon15:c.A1621G:p.R541G,Cdc25b:NM_023117:exon16:c.A1699G:p.R567G"	2qF1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.8151021	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	136549831	DC1638tail	autochthonous	sgMsh2	136549831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	201	3	0	0	exonic	Ankef1	synonymous SNV	Ankef1:NM_175667:exon7:c.C939T:p.L313L	2qF3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9999842	TCG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	145878853	DC1638tail	autochthonous	sgMsh2	145878853	A	G	SNV	Mutect2;Vardict	2	0.031	183	154	1	0.006493506	exonic	Rin2	nonsynonymous SNV	Rin2:NM_028724:exon11:c.A1970G:p.Y657C	2qG1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	155823196	DC1638tail	autochthonous	sgMsh2	155823196	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	70	715	91	0.127272727	exonic	Eif6	nonsynonymous SNV	Eif6:NM_010579:exon4:c.T542A:p.L181H	2qH1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.86032374	1	0.9914507	AAG	nonsynonymous	G	5	GGGGG	NA
DC1638T5	chr2	157254958	DC1638tail	autochthonous	sgMsh2	157254958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	108	0	0	NA	exonic	Mroh8	nonsynonymous SNV	Mroh8:NM_001039557:exon7:c.A968G:p.H323R	2qH1	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	164488644	DC1638tail	autochthonous	sgMsh2	164488644	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	138	135	5	0.037037037	exonic	Dbndd2	nonsynonymous SNV	"Dbndd2:NM_001048229:exon2:c.T216G:p.D72E,Dbndd2:NM_001048227:exon3:c.T216G:p.D72E,Dbndd2:NM_001048228:exon3:c.T216G:p.D72E,Dbndd2:NM_026797:exon3:c.T216G:p.D72E"	2qH3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9834107	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	164488650	DC1638tail	autochthonous	sgMsh2	164488650	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	136	142	5	0.035211268	exonic	Dbndd2	nonsynonymous SNV	"Dbndd2:NM_001048229:exon2:c.T222G:p.D74E,Dbndd2:NM_001048227:exon3:c.T222G:p.D74E,Dbndd2:NM_001048228:exon3:c.T222G:p.D74E,Dbndd2:NM_026797:exon3:c.T222G:p.D74E"	2qH3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9756013	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	166939912	DC1638tail	autochthonous	sgMsh2	166939912	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	204	155	1	0.006451613	exonic	Cse1l	nonsynonymous SNV	Cse1l:NM_023565:exon19:c.T1975C:p.F659L	2qH3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	166960051	DC1638tail	autochthonous	sgMsh2	166960051	A	G	SNV	Mutect2;Vardict	2	0.033	212	153	2	0.013071895	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon4:c.T317C:p.L106P,Stau1:NM_001109906:exon4:c.T317C:p.L106P,Stau1:NM_001291160:exon4:c.T317C:p.L106P,Stau1:NM_011490:exon4:c.T317C:p.L106P"	2qH3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.28E-08	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	168184757	DC1638tail	autochthonous	sgMsh2	168184757	T	G	SNV	Mutect2;Vardict	2	0.019	339	163	0	0	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_009628:exon4:c.A617C:p.N206T,Adnp:NM_001310086:exon5:c.A617C:p.N206T"	2qH3	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.09131928	3	1	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	180208269	DC1638tail	autochthonous	sgMsh2	180208269	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	105	56	3	0.053571429	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon3:c.T568G:p.W190G	2qH4	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.504659177	2	0.9999134	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr2	181212752	DC1638tail	autochthonous	sgMsh2	181212752	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	56	1	0	0	exonic	Srms	synonymous SNV	Srms:NM_011481:exon1:c.A21G:p.P7P	2qH4	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.723479	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr2	181352074	DC1638tail	autochthonous	sgMsh2	181352074	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	140	18	1	0.055555556	exonic	Rtel1	nonsynonymous SNV	"Rtel1:NM_001001882:exon27:c.T2450C:p.L817P,Rtel1:NM_001166665:exon27:c.T2450C:p.L817P,Rtel1:NM_001166666:exon27:c.T2450C:p.L817P,Rtel1:NM_001166667:exon27:c.T2450C:p.L817P,Rtel1:NM_001166668:exon27:c.T2450C:p.L817P,Rtel1:NM_001363071:exon28:c.T1523C:p.L508P"	2qH4	chr2-3441024-181815659	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9990501	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	10437978	DC1638tail	autochthonous	sgMsh2	10437978	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	166	36	1	0.027777778	exonic	Snx16	nonsynonymous SNV	"Snx16:NM_001127191:exon2:c.A208G:p.S70G,Snx16:NM_029068:exon2:c.A208G:p.S70G"	3qA1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9989785	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	14645140	DC1638tail	autochthonous	sgMsh2	14645140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	184	121	20	0.165289256	exonic	Car13	synonymous SNV	Car13:NM_024495:exon2:c.T141C:p.P47P	3qA1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.586365901	2	0.9999469	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr3	15548705	DC1638tail	autochthonous	sgMsh2	15548705	T	C	SNV	Mutect2;Vardict	2	0.036	496	4	0	0	exonic	Sirpb1b	nonsynonymous SNV	Sirpb1b:NM_001173460:exon2:c.A316G:p.S106G	3qA1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	1	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	29657182	DC1638tail	autochthonous	sgMsh2	29657182	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	195	0	0	NA	exonic	Egfem1	synonymous SNV	"Egfem1:NM_001167748:exon7:c.T738A:p.S246S,Egfem1:NM_001357198:exon9:c.T981A:p.S327S,Egfem1:NM_029412:exon9:c.T909A:p.S303S"	3qA3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999822	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr3	30631818	DC1638tail	autochthonous	sgMsh2	30631818	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	205	0	0	NA	exonic	Lrrc34	nonsynonymous SNV	Lrrc34:NM_027941:exon8:c.A736G:p.S246G	3qA3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	1.36E-08	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	38887730	DC1638tail	autochthonous	sgMsh2	38887730	G	-	Deletion	Mutect2;Vardict	2	0.067	96	0	0	NA	exonic	Fat4	frameshift deletion	Fat4:NM_183221:exon1:c.771delG:p.V259Cfs*48	3qB	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	NA	NA	CGG	frameshift	G	5	GGGGG	-1
DC1638T5	chr3	38887885	DC1638tail	autochthonous	sgMsh2	38887885	A	G	SNV	Mutect2;Strelka2	2	0.12	81	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon1:c.A926G:p.E309G	3qB	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.576753346	2	0.9962114	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	63767542	DC1638tail	autochthonous	sgMsh2	63767542	A	G	SNV	Mutect2;Vardict	2	0.037	148	11	0	0	exonic	Plch1	nonsynonymous SNV	"Plch1:NM_001177732:exon5:c.T650C:p.L217P,Plch1:NM_001177733:exon5:c.T650C:p.L217P,Plch1:NM_001370985:exon5:c.T650C:p.L217P,Plch1:NM_183191:exon5:c.T650C:p.L217P,Plch1:NM_001370984:exon7:c.T686C:p.L229P"	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999891	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	64089760	DC1638tail	autochthonous	sgMsh2	64089760	T	G	SNV	Mutect2;Vardict	2	0.014	544	3	0	0	exonic	Vmn2r1	nonsynonymous SNV	"Vmn2r1:NM_019918:exon3:c.T836G:p.I279S,Vmn2r1:NM_001384924:exon4:c.T611G:p.I204S"	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.06728789	3	1	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	69025839	DC1638tail	autochthonous	sgMsh2	69025839	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	195	172	14	0.081395349	exonic	Smc4	nonsynonymous SNV	"Smc4:NM_001356976:exon13:c.A1657G:p.I553V,Smc4:NM_133786:exon13:c.A1867G:p.I623V"	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.422952453	2	0.9999634	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	69034514	DC1638tail	autochthonous	sgMsh2	69034514	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	150	88	7	0.079545455	exonic	Smc4	synonymous SNV	"Smc4:NM_001356976:exon24:c.A3639G:p.K1213K,Smc4:NM_133786:exon24:c.A3849G:p.K1283K"	3qE1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9997171	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr3	75528818	DC1638tail	autochthonous	sgMsh2	75528818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	190	118	2	0.016949153	exonic	Pdcd10	nonsynonymous SNV	Pdcd10:NM_019745:exon4:c.A260C:p.D87A	3qE3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.38450223	2	0.9977693	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	79593619	DC1638tail	autochthonous	sgMsh2	79593619	T	C	SNV	Mutect2;Vardict	2	0.035	129	111	15	0.135135135	exonic	Ppid	nonsynonymous SNV	Ppid:NM_026352:exon2:c.T95C:p.I32T	3qE3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999772	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	83838353	DC1638tail	autochthonous	sgMsh2	83838353	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	106	16	1	0.0625	exonic	Tlr2	nonsynonymous SNV	Tlr2:NM_011905:exon3:c.T422C:p.V141A	3qE3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.528690567	2	0.9998978	TAC	nonsynonymous	C	5	CCCCC	NA
DC1638T5	chr3	84594125	DC1638tail	autochthonous	sgMsh2	84594125	T	-	Deletion	Mutect2;Vardict	2	0.027	269	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.348delT:p.F117Lfs*25	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	NA	NA	ATT	frameshift	NA	NA	NA	-1
DC1638T5	chr3	88581051	DC1638tail	autochthonous	sgMsh2	88581051	T	G	SNV	Mutect2;Vardict	2	0.027	206	657	14	0.02130898	exonic	Ssr2	nonsynonymous SNV	"Ssr2:NM_025448:exon2:c.T233G:p.V78G,Ssr2:NM_001356317:exon3:c.T233G:p.V78G,Ssr2:NM_001356318:exon3:c.T233G:p.V78G"	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	1.86E-09	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	89212839	DC1638tail	autochthonous	sgMsh2	89212839	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	105	13	1	0.076923077	exonic	Mtx1	synonymous SNV	Mtx1:NM_001357367:exon2:c.A189G:p.A63A	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9206743	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr3	89218050	DC1638tail	autochthonous	sgMsh2	89218050	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	167	29	0	0	exonic	Thbs3	nonsynonymous SNV	Thbs3:NM_013691:exon4:c.T566A:p.I189N	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9947188	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	89230787	DC1638tail	autochthonous	sgMsh2	89230787	-	T	Insertion	Strelka2;Vardict	2	0.0421	214	654	0	0	exonic	Muc1	frameshift insertion	Muc1:NM_013605:exon2:c.936dupT:p.P313Sfs*4	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.202344299	NA	NA	ACT	frameshift	NA	NA	NA	1
DC1638T5	chr3	89322736	DC1638tail	autochthonous	sgMsh2	89322736	T	G	SNV	Mutect2;Vardict	2	0.115	29	1	0	0	exonic	Efna3	nonsynonymous SNV	"Efna3:NM_001377116:exon1:c.A98C:p.H33P,Efna3:NM_010108:exon1:c.A98C:p.H33P"	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	2	0.9210091	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	89736068	DC1638tail	autochthonous	sgMsh2	89736068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	137	47	3	0.063829787	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon2:c.A511G:p.I171V,Adar:NM_001146296:exon2:c.A1255G:p.I419V,Adar:NM_001357958:exon2:c.A1372G:p.I458V,Adar:NM_019655:exon2:c.A1255G:p.I419V"	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.432565009	2	0.9995443	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	90098402	DC1638tail	autochthonous	sgMsh2	90098402	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	112	9	1	0.111111111	exonic	Tpm3	nonsynonymous SNV	Tpm3:NM_001293749:exon8:c.A692T:p.N231I	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9966107	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	92317559	DC1638tail	autochthonous	sgMsh2	92317559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	175	0	0	NA	exonic	Sprr2b	synonymous SNV	Sprr2b:NM_011469:exon2:c.T111C:p.P37P	3qF1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.446983843	2	0.9999878	CTC	synonymous	C	5	CCCCC	NA
DC1638T5	chr3	96141564	DC1638tail	autochthonous	sgMsh2	96141564	T	C	SNV	Mutect2;Vardict	2	0.078	55	28	2	0.071428571	exonic	Otud7b	synonymous SNV	"Otud7b:NM_001025614:exon4:c.T351C:p.N117N,Otud7b:NM_001025613:exon5:c.T351C:p.N117N"	3qF2.1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.7451356	ATG	synonymous	GGTGGG	14	GGTGGGGGTGGGGG	NA
DC1638T5	chr3	96185476	DC1638tail	autochthonous	sgMsh2	96185476	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	132	3	0	0	exonic	Sv2a	nonsynonymous SNV	Sv2a:NM_022030:exon2:c.T491A:p.F164Y	3qF2.1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9998144	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	97666585	DC1638tail	autochthonous	sgMsh2	97666585	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	121	11	2	0.181818182	exonic	Prkab2	nonsynonymous SNV	Prkab2:NM_182997:exon6:c.T539C:p.L180P	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.7118639	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	103051084	DC1638tail	autochthonous	sgMsh2	103051084	T	C	SNV	Mutect2;Vardict	2	0.029	282	1019	17	0.016683023	exonic	Csde1	nonsynonymous SNV	"Csde1:NM_001310693:exon13:c.T1295C:p.V432A,Csde1:NM_001161854:exon14:c.T1592C:p.V531A,Csde1:NM_144901:exon15:c.T1685C:p.V562A"	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	103803549	DC1638tail	autochthonous	sgMsh2	103803549	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	141	25	0	0	exonic	Dclre1b	nonsynonymous SNV	"Dclre1b:NM_001025312:exon3:c.A667G:p.R223G,Dclre1b:NM_133865:exon4:c.A1045G:p.R349G"	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9993638	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	103808173	DC1638tail	autochthonous	sgMsh2	103808173	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	144	32	0	0	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon2:c.T254G:p.I85S	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9930414	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	103808225	DC1638tail	autochthonous	sgMsh2	103808225	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	126	21	0	0	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon2:c.T202A:p.W68R	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.331633174	2	0.5875291	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	104825427	DC1638tail	autochthonous	sgMsh2	104825427	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	194	115	2	0.017391304	exonic	Capza1	nonsynonymous SNV	"Capza1:NM_001355044:exon8:c.A493C:p.S165R,Capza1:NM_009797:exon9:c.A700C:p.S234R"	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9999885	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	106202776	DC1638tail	autochthonous	sgMsh2	106202776	A	G	SNV	Mutect2;Vardict	2	0.016	504	32	0	0	exonic	Chil4	nonsynonymous SNV	Chil4:NM_145126:exon9:c.T1001C:p.V334A	3qF2.2	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.076900446	3	1	AAC	nonsynonymous	AACC	8	AACCAACC	NA
DC1638T5	chr3	107943273	DC1638tail	autochthonous	sgMsh2	107943273	A	G	SNV	Mutect2;MuSe;Vardict	3	0.091	151	11	0	0	exonic	Gstm6	synonymous SNV	"Gstm6:NM_001379506:exon2:c.T84C:p.Y28Y,Gstm6:NM_001379509:exon2:c.T84C:p.Y28Y,Gstm6:NM_008184:exon2:c.T84C:p.Y28Y,Gstm6:NM_001379507:exon3:c.T78C:p.Y26Y,Gstm6:NM_001379504:exon4:c.T189C:p.Y63Y"	3qF2.3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.437371287	2	0.9998664	CAT	synonymous	TCTCT	12	TCTCTTCTCTTC	NA
DC1638T5	chr3	108771924	DC1638tail	autochthonous	sgMsh2	108771924	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	64	0	0	NA	exonic	Aknad1	nonsynonymous SNV	Aknad1:NM_177859:exon7:c.A1370G:p.E457G	3qF3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	0.9963722	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	114167028	DC1638tail	autochthonous	sgMsh2	114167028	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	91	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon45:c.G3484A:p.A1162T	3qF3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.81967	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	116923429	DC1638tail	autochthonous	sgMsh2	116923429	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	123	264	4	0.015151515	exonic	Palmd	nonsynonymous SNV	Palmd:NM_023245:exon7:c.A1418G:p.Y473C	3qG1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9411099	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	121674118	DC1638tail	autochthonous	sgMsh2	121674118	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	84	0	0	NA	exonic	4930432M17Rik	synonymous SNV	4930432M17Rik:NM_001033814:exon3:c.T222G:p.T74T	3qG1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.523884289	2	0.9994362	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr3	121992819	DC1638tail	autochthonous	sgMsh2	121992819	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	183	35	0	0	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.G1032A:p.S344S,Arhgap29:NM_172525:exon11:c.G1032A:p.S344S"	3qG1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.403727342	2	0.9995489	CGT	synonymous	NA	NA	NA	NA
DC1638T5	chr3	122014313	DC1638tail	autochthonous	sgMsh2	122014313	A	G	SNV	Mutect2;Vardict	2	0.025	217	47	0	0	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon23:c.A3139G:p.R1047G,Arhgap29:NM_172525:exon23:c.A3139G:p.R1047G"	3qG1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.10E-09	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
DC1638T5	chr3	122014855	DC1638tail	autochthonous	sgMsh2	122014855	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	172	62	0	0	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon23:c.A3681G:p.Q1227Q,Arhgap29:NM_172525:exon23:c.A3681G:p.Q1227Q"	3qG1	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999747	AAC	synonymous	NA	NA	NA	NA
DC1638T5	chr3	129725145	DC1638tail	autochthonous	sgMsh2	129725145	T	G	SNV	Mutect2;Strelka2	2	0.06	154	0	0	NA	exonic	Egf	nonsynonymous SNV	Egf:NM_010113:exon6:c.A1054C:p.T352P	3qG3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9494897	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	129725147	DC1638tail	autochthonous	sgMsh2	129725147	T	A	SNV	Mutect2;Strelka2	2	0.06	154	0	0	NA	exonic	Egf	nonsynonymous SNV	Egf:NM_010113:exon6:c.A1052T:p.Y351F	3qG3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9494897	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	135336484	DC1638tail	autochthonous	sgMsh2	135336484	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	141	2	0	0	exonic	Slc9b2	nonsynonymous SNV	Slc9b2:NM_178877:exon12:c.T1523C:p.L508P	3qG3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9923824	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	138228893	DC1638tail	autochthonous	sgMsh2	138228893	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	173	2	0	0	exonic	Adh7	nonsynonymous SNV	Adh7:NM_009626:exon8:c.T1076C:p.F359S	3qG3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.5420461	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	138286864	DC1638tail	autochthonous	sgMsh2	138286864	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	106	5	0	0	exonic	Adh1	nonsynonymous SNV	Adh1:NM_007409:exon6:c.A740G:p.Y247C	3qG3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	9.60E-09	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr3	152238331	DC1638tail	autochthonous	sgMsh2	152238331	T	C	SNV	Mutect2;Vardict	2	0.022	191	30	0	0	exonic	Nexn	synonymous SNV	"Nexn:NM_199465:exon11:c.A1368G:p.E456E,Nexn:NM_001357206:exon12:c.A1560G:p.E520E"	3qH3	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.105738113	3	1.34E-09	CTT	synonymous	CTCTT	10	CTCTTCTCTT	NA
DC1638T5	chr3	157994641	DC1638tail	autochthonous	sgMsh2	157994641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	207	173	15	0.086705202	exonic	Ankrd13c	synonymous SNV	"Ankrd13c:NM_001359909:exon8:c.A291G:p.G97G,Ankrd13c:NM_001013806:exon9:c.A1098G:p.G366G"	3qH4	chr3-3641167-159911278	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.379695952	2	0.9979328	GAC	synonymous	NA	NA	NA	NA
DC1638T5	chr4	11221120	DC1638tail	autochthonous	sgMsh2	11221120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	259	90	11	0.122222222	exonic	Ints8	nonsynonymous SNV	"Ints8:NM_001159595:exon17:c.A2254G:p.M752V,Ints8:NM_178112:exon17:c.A2254G:p.M752V"	4qA1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.552721956	2	2.56E-08	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	11712111	DC1638tail	autochthonous	sgMsh2	11712111	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	150	118	28	0.237288136	exonic	Gem	nonsynonymous SNV	Gem:NM_010276:exon4:c.A547G:p.I183V	4qA1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.759391905	1	0.9888475	CAT	nonsynonymous	CAGA	13	CAGACAGAAGACA	NA
DC1638T5	chr4	19880014	DC1638tail	autochthonous	sgMsh2	19880014	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	302	95	0	0	exonic	Atp6v0d2	synonymous SNV	Atp6v0d2:NM_175406:exon7:c.T882C:p.Y294Y	4qA3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	1.00E-09	CAT	synonymous	CT	9	CTCTCTCTC	NA
DC1638T5	chr4	26328073	DC1638tail	autochthonous	sgMsh2	26328073	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	201	27	0	0	exonic	Manea	nonsynonymous SNV	Manea:NM_172865:exon5:c.T967C:p.Y323H	4qA3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	3.05E-08	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	32645296	DC1638tail	autochthonous	sgMsh2	32645296	T	-	Deletion	Mutect2;Vardict	2	0.025	256	38	1	0.026315789	exonic	Casp8ap2	frameshift deletion	"Casp8ap2:NM_001122978:exon8:c.4368delT:p.F1457Lfs*18,Casp8ap2:NM_011997:exon8:c.4368delT:p.F1457Lfs*18"	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	NA	NA	ATT	frameshift	NA	NA	NA	-1
DC1638T5	chr4	32759123	DC1638tail	autochthonous	sgMsh2	32759123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	178	32	4	0.125	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon88:c.A14594G:p.D4865G	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	2	0.9991139	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	40984956	DC1638tail	autochthonous	sgMsh2	40984956	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	196	61	1	0.016393443	exonic	Nfx1	nonsynonymous SNV	"Nfx1:NM_001290448:exon3:c.A1079G:p.Q360R,Nfx1:NM_001290449:exon3:c.A1079G:p.Q360R,Nfx1:NM_023739:exon3:c.A1079G:p.Q360R"	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	41630047	DC1638tail	autochthonous	sgMsh2	41630047	T	A	SNV	Mutect2;Vardict	2	0.044	104	0	0	NA	exonic	Dnaic1	synonymous SNV	Dnaic1:NM_175138:exon15:c.T1455A:p.T485T	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9982891	CTA	synonymous	NA	NA	NA	NA
DC1638T5	chr4	43538253	DC1638tail	autochthonous	sgMsh2	43538253	T	C	SNV	Mutect2;Vardict	2	0.041	100	162	5	0.030864198	exonic	Tln1	synonymous SNV	Tln1:NM_011602:exon41:c.A5448G:p.E1816E	4qA5	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9989966	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr4	82835566	DC1638tail	autochthonous	sgMsh2	82835566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	167	24	1	0.041666667	exonic	Zdhhc21	synonymous SNV	Zdhhc21:NM_026647:exon6:c.T384C:p.G128G	4qC3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.999968	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr4	101733371	DC1638tail	autochthonous	sgMsh2	101733371	T	G	SNV	Mutect2;Vardict	2	0.026	269	8	0	0	exonic	Lepr	nonsynonymous SNV	"Lepr:NM_001122899:exon3:c.T145G:p.S49A,Lepr:NM_010704:exon3:c.T145G:p.S49A,Lepr:NM_146146:exon3:c.T145G:p.S49A"	4qC6	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	101780033	DC1638tail	autochthonous	sgMsh2	101780033	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	166	21	0	0	exonic	Lepr	synonymous SNV	"Lepr:NM_001122899:exon14:c.A2118G:p.P706P,Lepr:NM_010704:exon14:c.A2118G:p.P706P,Lepr:NM_146146:exon14:c.A2118G:p.P706P"	4qC6	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9575765	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr4	103048237	DC1638tail	autochthonous	sgMsh2	103048237	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	147	0	0	NA	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon16:c.T2346C:p.N782N	4qC6	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9997728	TAT	synonymous	NA	NA	NA	NA
DC1638T5	chr4	107064404	DC1638tail	autochthonous	sgMsh2	107064404	T	A	SNV	Mutect2;Vardict	2	0.029	189	151	4	0.026490066	exonic	Mrpl37	nonsynonymous SNV	Mrpl37:NM_025500:exon3:c.A627T:p.L209F	4qC7	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.29E-08	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	107192510	DC1638tail	autochthonous	sgMsh2	107192510	A	T	SNV	Mutect2;Vardict	2	0.03	179	1430	97	0.067832168	exonic	Tmem59	nonsynonymous SNV	Tmem59:NM_029565:exon5:c.A592T:p.N198Y	4qC7	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	4.86E-08	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	109370617	DC1638tail	autochthonous	sgMsh2	109370617	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	165	218	10	0.04587156	exonic	Eps15	nonsynonymous SNV	"Eps15:NM_001159964:exon8:c.A1052C:p.D351A,Eps15:NM_007943:exon20:c.A1994C:p.D665A"	4qC7	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.5468313	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	117052761	DC1638tail	autochthonous	sgMsh2	117052761	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.146	127	64	0	0	exonic	Eif2b3	frameshift deletion	"Eif2b3:NM_001111277:exon5:c.492delA:p.R166Gfs*41,Eif2b3:NM_175135:exon5:c.492delA:p.R166Gfs*41"	4qD1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.70171657	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr4	118431682	DC1638tail	autochthonous	sgMsh2	118431682	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	104	608	8	0.013157895	exonic	Elovl1	synonymous SNV	"Elovl1:NM_001039175:exon6:c.T336G:p.P112P,Elovl1:NM_001039176:exon7:c.T567G:p.P189P,Elovl1:NM_019422:exon7:c.T567G:p.P189P"	4qD2.1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.8976541	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr4	118625868	DC1638tail	autochthonous	sgMsh2	118625868	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	215	283	47	0.166077739	exonic	Ebna1bp2	stoploss	Ebna1bp2:NM_026932:exon9:c.T919G:p.X307G	4qD2.1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	4.79E-09	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	120565395	DC1638tail	autochthonous	sgMsh2	120565395	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	201	223	2	0.00896861	exonic	Ctps	synonymous SNV	"Ctps:NM_001355491:exon3:c.T211C:p.L71L,Ctps:NM_016748:exon3:c.T211C:p.L71L"	4qD2.2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	3.33E-09	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr4	121082959	DC1638tail	autochthonous	sgMsh2	121082959	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.075	91	203	0	0	exonic	Zmpste24	frameshift deletion	Zmpste24:NM_172700:exon5:c.489delT:p.F163Lfs*1	4qD2.2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.360470841	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr4	126180763	DC1638tail	autochthonous	sgMsh2	126180763	A	C	SNV	Mutect2;Vardict	2	0.039	206	219	0	0	exonic	Thrap3	nonsynonymous SNV	"Thrap3:NM_146153:exon3:c.T189G:p.N63K,Thrap3:NM_001356455:exon4:c.T189G:p.N63K,Thrap3:NM_001356456:exon4:c.T189G:p.N63K"	4qD2.2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999996	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	126316645	DC1638tail	autochthonous	sgMsh2	126316645	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	70	59	8	0.13559322	exonic	Adprhl2	nonsynonymous SNV	Adprhl2:NM_133883:exon6:c.A1041T:p.Q347H	4qD2.2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.793934	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	130073074	DC1638tail	autochthonous	sgMsh2	130073074	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	127	3	0	0	exonic	Col16a1	synonymous SNV	Col16a1:NM_028266:exon41:c.T2658G:p.A886A	4qD2.2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9993433	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr4	131802538	DC1638tail	autochthonous	sgMsh2	131802538	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	83	2	0	0	exonic	Ptpru	nonsynonymous SNV	"Ptpru:NM_001083119:exon11:c.G1858A:p.A620T,Ptpru:NM_011214:exon11:c.G1858A:p.A620T"	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.519078011	2	0.9994027	GCT	nonsynonymous	G	5	GGGGG	NA
DC1638T5	chr4	132386922	DC1638tail	autochthonous	sgMsh2	132386922	T	-	Deletion	Strelka2;Vardict	2	0.0914	197	61	2	0.032786885	exonic	Phactr4	frameshift deletion	"Phactr4:NM_001161797:exon3:c.160delA:p.S54Afs*17,Phactr4:NM_175306:exon3:c.160delA:p.S54Afs*11"	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.439293798	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
DC1638T5	chr4	132459909	DC1638tail	autochthonous	sgMsh2	132459909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	119	17	6	0.352941176	exonic	Med18	nonsynonymous SNV	Med18:NM_026039:exon3:c.T278C:p.M93T	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	3.01E-08	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	132997989	DC1638tail	autochthonous	sgMsh2	132997989	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	166	18	0	0	exonic	Fgr	nonsynonymous SNV	Fgr:NM_010208:exon10:c.A1004T:p.K335M	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9995576	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	133370712	DC1638tail	autochthonous	sgMsh2	133370712	T	G	SNV	Mutect2;Vardict	2	0.055	117	78	3	0.038461538	exonic	Slc9a1	nonsynonymous SNV	Slc9a1:NM_016981:exon1:c.T169G:p.S57A	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9790684	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	133370795	DC1638tail	autochthonous	sgMsh2	133370795	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	160	90	1	0.011111111	exonic	Slc9a1	nonsynonymous SNV	Slc9a1:NM_016981:exon1:c.T252A:p.H84Q	4qD2.3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9957089	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	136936314	DC1638tail	autochthonous	sgMsh2	136936314	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	48	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon6:c.A1430G:p.Y477C	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9821142	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	137724709	DC1638tail	autochthonous	sgMsh2	137724709	A	-	Deletion	Strelka2;Vardict	2	0.0652	92	303	2	0.00660066	exonic	Rap1gap	frameshift deletion	"Rap1gap:NM_001331215:exon17:c.1539delA:p.S515Afs*101,Rap1gap:NM_001379234:exon18:c.1617delA:p.S541Afs*101,Rap1gap:NM_001379235:exon18:c.1602delA:p.S536Afs*101,Rap1gap:NM_029563:exon18:c.1446delA:p.S484Afs*101,Rap1gap:NM_001081155:exon19:c.1638delA:p.S548Afs*101,Rap1gap:NM_001256218:exon19:c.1638delA:p.S548Afs*101,Rap1gap:NM_001379236:exon19:c.1524delA:p.S510Afs*101,Rap1gap:NM_001379233:exon20:c.1716delA:p.S574Afs*101"	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.313369318	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr4	139360136	DC1638tail	autochthonous	sgMsh2	139360136	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	63	45	0	0	exonic	Emc1	stopgain	"Emc1:NM_001039200:exon7:c.T746A:p.L249X,Emc1:NM_146157:exon7:c.T746A:p.L249X"	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.769004461	1	0.7837945	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	139388399	DC1638tail	autochthonous	sgMsh2	139388399	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	181	23	4	0.173913043	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon2:c.T208C:p.Y70H	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9990872	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	139446871	DC1638tail	autochthonous	sgMsh2	139446871	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	70	59	4	0.06779661	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon64:c.A9232G:p.I3078V	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	0.9979492	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	139455590	DC1638tail	autochthonous	sgMsh2	139455590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	175	73	11	0.150684932	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon73:c.A10763G:p.N3588S	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.999981	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	139479024	DC1638tail	autochthonous	sgMsh2	139479024	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	150	159	8	0.050314465	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon100:c.A14642C:p.N4881T	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.9464834	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	139965456	DC1638tail	autochthonous	sgMsh2	139965456	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	128	9	1	0.111111111	exonic	Klhdc7a	synonymous SNV	Klhdc7a:NM_173427:exon1:c.A2179C:p.R727R	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	7.97E-09	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr4	140992177	DC1638tail	autochthonous	sgMsh2	140992177	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	69	17	2	0.117647059	exonic	Atp13a2	nonsynonymous SNV	"Atp13a2:NM_001164366:exon2:c.T56C:p.L19P,Atp13a2:NM_001379619:exon2:c.T56C:p.L19P,Atp13a2:NM_001379620:exon2:c.T56C:p.L19P,Atp13a2:NM_001379621:exon2:c.T56C:p.L19P,Atp13a2:NM_001379622:exon2:c.T56C:p.L19P,Atp13a2:NM_029097:exon2:c.T56C:p.L19P"	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.38450223	2	0.8633383	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	141308541	DC1638tail	autochthonous	sgMsh2	141308541	A	C	SNV	Mutect2;Vardict	2	0.055	96	385	3	0.007792208	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon3:c.A287C:p.E96A	4qD3	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9630413	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	143132303	DC1638tail	autochthonous	sgMsh2	143132303	T	-	Deletion	Mutect2;Vardict	2	0.061	175	77	3	0.038961039	exonic	Prdm2	frameshift deletion	"Prdm2:NM_001081355:exon8:c.4416delA:p.K1472Nfs*92,Prdm2:NM_001256380:exon8:c.4416delA:p.K1472Nfs*92"	4qE1	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.293182951	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr4	148462926	DC1638tail	autochthonous	sgMsh2	148462926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	205	10	0	0	exonic	Mtor	synonymous SNV	Mtor:NM_020009:exon9:c.A1365G:p.V455V	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	2	0.953085	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr4	148463720	DC1638tail	autochthonous	sgMsh2	148463720	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	102	12	0	0	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon10:c.A1441G:p.T481A	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9809613	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	148486137	DC1638tail	autochthonous	sgMsh2	148486137	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	204	20	3	0.15	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon24:c.T3650G:p.V1217G	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.394114786	2	0.9995123	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	150867380	DC1638tail	autochthonous	sgMsh2	150867380	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	107	389	5	0.01285347	exonic	Errfi1	nonsynonymous SNV	"Errfi1:NM_001356323:exon4:c.A1264T:p.I422F,Errfi1:NM_133753:exon4:c.A1264T:p.I422F"	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.6795954	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	151983212	DC1638tail	autochthonous	sgMsh2	151983212	T	-	Deletion	Strelka2;Vardict	2	0.101	99	33	4	0.121212121	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
DC1638T5	chr4	152025852	DC1638tail	autochthonous	sgMsh2	152025852	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	146	18	0	0	exonic	Zbtb48	synonymous SNV	"Zbtb48:NM_001379628:exon3:c.T837C:p.G279G,Zbtb48:NM_133879:exon3:c.T837C:p.G279G"	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9978204	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr4	155286868	DC1638tail	autochthonous	sgMsh2	155286868	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	234	19	0	0	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon7:c.T337A:p.W113R,Prkcz:NM_001355178:exon7:c.T562A:p.W188R,Prkcz:NM_008860:exon10:c.T886A:p.W296R"	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.10E-09	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr4	155962663	DC1638tail	autochthonous	sgMsh2	155962663	C	A	SNV	Mutect2;Vardict	2	0.039	110	97	0	0	exonic	C1qtnf12	synonymous SNV	C1qtnf12:NM_026125:exon1:c.C85A:p.R29R	4qE2	chr4-3834436-156200568	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9996935	TCG	synonymous	NA	NA	NA	NA
DC1638T5	chr5	19227405	DC1638tail	autochthonous	sgMsh2	19227405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	37	0	0	NA	exonic	Magi2	synonymous SNV	Magi2:NM_001170746:exon1:c.A117G:p.G39G	5qA3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.70171657	2	0.000774517	GAC	synonymous	NA	NA	NA	NA
DC1638T5	chr5	24322706	DC1638tail	autochthonous	sgMsh2	24322706	A	G	SNV	Mutect2;Vardict	2	0.034	128	25	0	0	exonic	Kcnh2	nonsynonymous SNV	"Kcnh2:NM_001294162:exon7:c.T1621C:p.F541L,Kcnh2:NM_013569:exon11:c.T2647C:p.F883L"	5qA3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	0.9999821	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	24385546	DC1638tail	autochthonous	sgMsh2	24385546	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	151	9	1	0.111111111	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon12:c.A2544G:p.E848E	5qA3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	2	0.5397338	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr5	25310554	DC1638tail	autochthonous	sgMsh2	25310554	T	-	Deletion	Mutect2;Vardict	2	0.031	307	15	2	0.133333333	exonic	Kmt2c	frameshift deletion	Kmt2c:NM_001081383:exon38:c.8290delA:p.S2764Afs*5	5qA3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	NA	NA	CTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr5	30895883	DC1638tail	autochthonous	sgMsh2	30895883	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	45	32	1	0.03125	exonic	Agbl5	synonymous SNV	"Agbl5:NM_001294262:exon11:c.T1992G:p.S664S,Agbl5:NM_001374737:exon11:c.T1992G:p.S664S,Agbl5:NM_174849:exon11:c.T1992G:p.S664S,Agbl5:NM_001048192:exon12:c.T2079G:p.S693S"	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.466208954	2	0.9474649	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr5	31073613	DC1638tail	autochthonous	sgMsh2	31073613	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	67	47	8	0.170212766	exonic	Cad	synonymous SNV	"Cad:NM_001289522:exon31:c.T4983C:p.R1661R,Cad:NM_001289523:exon31:c.T4983C:p.R1661R,Cad:NM_023525:exon31:c.T4983C:p.R1661R"	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.523884289	2	0.9974207	GTC	synonymous	GTCC	8	GTCCGTCC	NA
DC1638T5	chr5	32321299	DC1638tail	autochthonous	sgMsh2	32321299	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	285	1	0	0	exonic	Plb1	nonsynonymous SNV	"Plb1:NM_030072:exon33:c.A2006T:p.N669I,Plb1:NM_001081407:exon34:c.A2291T:p.N764I"	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	9.44E-09	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	32830101	DC1638tail	autochthonous	sgMsh2	32830101	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	312	18	0	0	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2049C:p.G683G	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.00E-09	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr5	32877094	DC1638tail	autochthonous	sgMsh2	32877094	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	359	10	0	0	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001170567:exon6:c.T304A:p.L102M,Depdc5:NM_177786:exon6:c.T304A:p.L102M,Depdc5:NM_001025426:exon7:c.T304A:p.L102M"	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	33145327	DC1638tail	autochthonous	sgMsh2	33145327	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	140	4	0	0	exonic	Slc5a1	nonsynonymous SNV	Slc5a1:NM_019810:exon7:c.T661G:p.F221V	5qB1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.461402676	2	0.9999542	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	33667086	DC1638tail	autochthonous	sgMsh2	33667086	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	195	158	7	0.044303797	exonic	Tacc3	nonsynonymous SNV	"Tacc3:NM_001040435:exon7:c.A1034C:p.K345T,Tacc3:NM_001310541:exon7:c.A1055C:p.K352T"	5qB2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999991	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	33667998	DC1638tail	autochthonous	sgMsh2	33667998	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	332	174	14	0.08045977	exonic	Tacc3	nonsynonymous SNV	"Tacc3:NM_001040435:exon8:c.A1151G:p.K384R,Tacc3:NM_001310541:exon8:c.A1172G:p.K391R"	5qB2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	35028546	DC1638tail	autochthonous	sgMsh2	35028546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	69	55	3	0.054545455	exonic	Rgs12	nonsynonymous SNV	"Rgs12:NM_001163512:exon11:c.A1271G:p.K424R,Rgs12:NM_173402:exon14:c.A3245G:p.K1082R"	5qB2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.620009846	2	0.9709478	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	37310224	DC1638tail	autochthonous	sgMsh2	37310224	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.133	31	4	3	0.75	exonic	Evc	synonymous SNV	Evc:NM_021292:exon15:c.G2241A:p.A747A	5qB3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.639234958	2	0.8864356	GCG	synonymous	NA	NA	NA	NA
DC1638T5	chr5	43773454	DC1638tail	autochthonous	sgMsh2	43773454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	393	232	9	0.038793103	exonic	Fbxl5	nonsynonymous SNV	"Fbxl5:NM_001159963:exon2:c.A290G:p.K97R,Fbxl5:NM_178729:exon2:c.A290G:p.K97R"	5qB3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.456596399	2	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	61809173	DC1638tail	autochthonous	sgMsh2	61809173	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	206	0	0	NA	exonic	G6pd2	nonsynonymous SNV	G6pd2:NM_019468:exon1:c.A290C:p.K97T	5qC3.1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9999207	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	64954798	DC1638tail	autochthonous	sgMsh2	64954798	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	183	4	0	0	exonic	Tlr6	nonsynonymous SNV	"Tlr6:NM_001359180:exon2:c.A732C:p.E244D,Tlr6:NM_001384171:exon2:c.A732C:p.E244D,Tlr6:NM_011604:exon2:c.A732C:p.E244D"	5qC3.1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9915138	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	66452088	DC1638tail	autochthonous	sgMsh2	66452088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	156	61	12	0.196721311	exonic	Apbb2	nonsynonymous SNV	"Apbb2:NM_001201413:exon5:c.T215C:p.L72P,Apbb2:NM_001201414:exon5:c.T215C:p.L72P,Apbb2:NM_001201415:exon5:c.T215C:p.L72P,Apbb2:NM_001310626:exon5:c.T215C:p.L72P,Apbb2:NM_009686:exon5:c.T215C:p.L72P"	5qC3.1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.519078011	2	0.9999988	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	67611296	DC1638tail	autochthonous	sgMsh2	67611296	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	79	0	0	NA	exonic	Shisa3	nonsynonymous SNV	Shisa3:NM_001033415:exon2:c.T538A:p.F180I	5qC3.1	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.706522848	2	0.6050503	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	76631000	DC1638tail	autochthonous	sgMsh2	76631000	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	124	20	1	0.05	exonic	Cep135	nonsynonymous SNV	Cep135:NM_199032:exon17:c.T2273G:p.L758R	5qC3.3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.600784735	2	0.9980816	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	92431109	DC1638tail	autochthonous	sgMsh2	92431109	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	287	68	2	0.029411765	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A81G:p.G27G,Nup54:NM_001359995:exon3:c.A243G:p.G81G"	5qE2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	2.75E-09	ATC	synonymous	NA	NA	NA	NA
DC1638T5	chr5	100818578	DC1638tail	autochthonous	sgMsh2	100818578	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	227	13	0	0	exonic	Abraxas1	synonymous SNV	Abraxas1:NM_172405:exon2:c.T117C:p.G39G	5qE4	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	3	0.9994375	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr5	108847685	DC1638tail	autochthonous	sgMsh2	108847685	T	-	Deletion	Mutect2;Vardict	2	0.02	485	0	0	NA	exonic	Vmn2r9	frameshift deletion	"Vmn2r9:NM_001104621:exon3:c.1096delA:p.M366Wfs*19,Vmn2r9:NM_001385191:exon3:c.1096delA:p.M366Wfs*19"	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	NA	NA	ATT	frameshift	NA	NA	NA	-1
DC1638T5	chr5	110291004	DC1638tail	autochthonous	sgMsh2	110291004	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	103	15	4	0.266666667	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon6:c.T469G:p.F157V	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.869936296	1	0.9997279	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	110297024	DC1638tail	autochthonous	sgMsh2	110297024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	135	15	4	0.266666667	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon13:c.T1245G:p.S415R	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.581559623	2	0.9996481	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	112785633	DC1638tail	autochthonous	sgMsh2	112785633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	83	0	0	NA	exonic	Myo18b	nonsynonymous SNV	Myo18b:NM_028901:exon32:c.T5303C:p.M1768T	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	2	0.9711469	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	115560988	DC1638tail	autochthonous	sgMsh2	115560988	T	G	SNV	Mutect2;Vardict	2	0.033	170	5044	73	0.014472641	exonic	Rplp0	nonsynonymous SNV	Rplp0:NM_007475:exon3:c.T302G:p.M101R	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	120600156	DC1638tail	autochthonous	sgMsh2	120600156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	108	0	0	NA	exonic	Iqcd	nonsynonymous SNV	Iqcd:NM_029408:exon2:c.A38G:p.H13R	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	0.9998217	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	121437694	DC1638tail	autochthonous	sgMsh2	121437694	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	172	98	0	0	exonic	Naa25	nonsynonymous SNV	Naa25:NM_172722:exon21:c.T2527A:p.F843I	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9999397	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
DC1638T5	chr5	122261503	DC1638tail	autochthonous	sgMsh2	122261503	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	162	10	0	0	exonic	Tctn1	nonsynonymous SNV	Tctn1:NM_001039153:exon2:c.T257C:p.L86P	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9997679	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	122500789	DC1638tail	autochthonous	sgMsh2	122500789	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	131	484	66	0.136363636	exonic	Atp2a2	nonsynonymous SNV	"Atp2a2:NM_001110140:exon3:c.T161C:p.I54T,Atp2a2:NM_009722:exon3:c.T161C:p.I54T"	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	3	0.6457319	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	123630417	DC1638tail	autochthonous	sgMsh2	123630417	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	200	96	2	0.020833333	exonic	Clip1	synonymous SNV	"Clip1:NM_001359224:exon9:c.T2118C:p.T706T,Clip1:NM_019765:exon9:c.T2118C:p.T706T,Clip1:NM_001359220:exon10:c.T2223C:p.T741T"	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9999918	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr5	123769896	DC1638tail	autochthonous	sgMsh2	123769896	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	298	5	0	0	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon18:c.T1445C:p.V482A	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9999993	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	123908155	DC1638tail	autochthonous	sgMsh2	123908155	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	349	432	19	0.043981481	exonic	Denr	nonsynonymous SNV	Denr:NM_026603:exon2:c.A47G:p.D16G	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	3.08E-09	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	124320850	DC1638tail	autochthonous	sgMsh2	124320850	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	144	5	0	0	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon3:c.T256A:p.C86S,Mphosph9:NM_001277867:exon3:c.T256A:p.C86S"	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9999377	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	124713446	DC1638tail	autochthonous	sgMsh2	124713446	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	160	62	0	0	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon13:c.T1593A:p.F531L	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999955	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	124775027	DC1638tail	autochthonous	sgMsh2	124775027	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	126	0	0	NA	exonic	Dnah10	synonymous SNV	Dnah10:NM_019536:exon31:c.G5418A:p.Q1806Q	5qF	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.514271733	2	0.9999877	AGG	synonymous	GCCA	9	GCCAGCCAG	NA
DC1638T5	chr5	130101918	DC1638tail	autochthonous	sgMsh2	130101918	T	C	SNV	Mutect2;Vardict	2	0.04	137	32	2	0.0625	exonic	Tpst1	synonymous SNV	"Tpst1:NM_001130476:exon2:c.T228C:p.G76G,Tpst1:NM_013837:exon2:c.T228C:p.G76G"	5qG1.3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999314	GTG	synonymous	G	5	GGGGG	NA
DC1638T5	chr5	134934326	DC1638tail	autochthonous	sgMsh2	134934326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	62	9	3	0.333333333	exonic	Mettl27	nonsynonymous SNV	"Mettl27:NM_001347490:exon4:c.A290G:p.D97G,Mettl27:NM_001359535:exon4:c.A290G:p.D97G,Mettl27:NM_001359536:exon4:c.A290G:p.D97G,Mettl27:NM_001359537:exon4:c.A290G:p.D97G,Mettl27:NM_001359538:exon4:c.A290G:p.D97G,Mettl27:NM_024479:exon4:c.A290G:p.D97G"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	0.9997522	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
DC1638T5	chr5	136091762	DC1638tail	autochthonous	sgMsh2	136091762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	141	10	1	0.1	exonic	Rasa4	nonsynonymous SNV	"Rasa4:NM_001039103:exon4:c.T251G:p.I84S,Rasa4:NM_133914:exon4:c.T251G:p.I84S"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.999997	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	136968233	DC1638tail	autochthonous	sgMsh2	136968233	A	T	SNV	Mutect2;Vardict	2	0.024	179	0	0	NA	exonic	Cldn15	nonsynonymous SNV	Cldn15:NM_021719:exon1:c.A127T:p.T43S	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	3	4.17E-09	CAC	nonsynonymous	CAC	14	CACCACCAACACCA	NA
DC1638T5	chr5	137064960	DC1638tail	autochthonous	sgMsh2	137064960	A	G	SNV	Mutect2;Vardict	2	0.033	165	411	3	0.00729927	exonic	Serpine1	nonsynonymous SNV	Serpine1:NM_008871:exon6:c.T901C:p.F301L	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	0.9999994	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	137299819	DC1638tail	autochthonous	sgMsh2	137299819	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	325	177	2	0.011299435	exonic	Srrt	nonsynonymous SNV	"Srrt:NM_001109909:exon8:c.A976G:p.K326E,Srrt:NM_001109910:exon8:c.A976G:p.K326E,Srrt:NM_001359602:exon8:c.A976G:p.K326E,Srrt:NM_031405:exon8:c.A976G:p.K326E"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.00E-09	TTA	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr5	137360519	DC1638tail	autochthonous	sgMsh2	137360519	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	90	43	1	0.023255814	exonic	Ephb4	synonymous SNV	"Ephb4:NM_001159571:exon5:c.T963A:p.T321T,Ephb4:NM_010144:exon5:c.T963A:p.T321T"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.663266347	2	0.8993739	CTA	synonymous	NA	NA	NA	NA
DC1638T5	chr5	137365646	DC1638tail	autochthonous	sgMsh2	137365646	T	G	SNV	Mutect2;Vardict	2	0.03	246	84	0	0	exonic	Ephb4	synonymous SNV	"Ephb4:NM_001159571:exon11:c.T1806G:p.P602P,Ephb4:NM_010144:exon11:c.T1779G:p.P593P"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	1.11E-09	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr5	137446621	DC1638tail	autochthonous	sgMsh2	137446621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	126	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon25:c.T5375C:p.V1792A	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.5431094	2	0.9999499	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	137831164	DC1638tail	autochthonous	sgMsh2	137831164	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	253	151	18	0.119205298	exonic	Pilra	nonsynonymous SNV	Pilra:NM_153510:exon3:c.T637G:p.L213V	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	1.88E-08	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	137831206	DC1638tail	autochthonous	sgMsh2	137831206	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	265	101	16	0.158415842	exonic	Pilra	nonsynonymous SNV	Pilra:NM_153510:exon3:c.T595G:p.L199V	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9999992	AAC	nonsynonymous	CCAAC	10	CCAACCCAAC	NA
DC1638T5	chr5	137857420	DC1638tail	autochthonous	sgMsh2	137857420	T	A	SNV	Mutect2;Vardict	2	0.037	199	50	1	0.02	exonic	Pilrb1	stopgain	Pilrb1:NM_133209:exon2:c.A208T:p.K70X	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999997	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	137921465	DC1638tail	autochthonous	sgMsh2	137921465	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	92	40	1	0.025	exonic	Cyp3a13	synonymous SNV	Cyp3a13:NM_007819:exon1:c.T48C:p.A16A	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9867346	TAG	synonymous	NA	NA	NA	NA
DC1638T5	chr5	138169276	DC1638tail	autochthonous	sgMsh2	138169276	T	G	SNV	Mutect2;Vardict	2	0.042	139	152	1	0.006578947	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon5:c.A83C:p.E28A,Mcm7:NM_001356577:exon5:c.A83C:p.E28A,Mcm7:NM_008568:exon5:c.A404C:p.E135A"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9998786	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	138647013	DC1638tail	autochthonous	sgMsh2	138647013	A	G	SNV	Mutect2;Vardict	2	0.071	60	8	0	0	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1159G:p.T387A	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	5.49E-06	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	139352786	DC1638tail	autochthonous	sgMsh2	139352786	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	exonic	Cyp2w1	nonsynonymous SNV	Cyp2w1:NM_001160265:exon1:c.T140A:p.L47Q	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.961255576	1	0.9934602	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	139807692	DC1638tail	autochthonous	sgMsh2	139807692	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	215	25	0	0	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon5:c.T581A:p.I194N,Tmem184a:NM_001161548:exon6:c.T653A:p.I218N"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	4.77E-08	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	140626480	DC1638tail	autochthonous	sgMsh2	140626480	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.095	108	41	2	0.048780488	exonic	Ttyh3	frameshift deletion	Ttyh3:NM_175274:exon13:c.1471delC:p.L491Sfs*14	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.456596399	NA	NA	AGG	frameshift	G	5	GGGGG	-1
DC1638T5	chr5	140705138	DC1638tail	autochthonous	sgMsh2	140705138	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	91	5	0	0	exonic	Brat1	nonsynonymous SNV	Brat1:NM_001276287:exon1:c.A28C:p.I10L	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	2	0.9646518	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	142905242	DC1638tail	autochthonous	sgMsh2	142905242	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	112	13608	136	0.009994121	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon3:c.A358C:p.T120P	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9955092	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	144282043	DC1638tail	autochthonous	sgMsh2	144282043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	142	208	36	0.173076923	exonic	Baiap2l1	nonsynonymous SNV	Baiap2l1:NM_025833:exon8:c.A754G:p.T252A	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.620009846	2	0.9962891	GTG	nonsynonymous	G	5	GGGGG	NA
DC1638T5	chr5	144994072	DC1638tail	autochthonous	sgMsh2	144994072	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	69	0	0	NA	exonic	Kpna7	nonsynonymous SNV	"Kpna7:NM_001347531:exon8:c.C962T:p.P321L,Kpna7:NM_001013774:exon9:c.C899T:p.P300L"	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.764198183	1	0.801221	AGG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	145030506	DC1638tail	autochthonous	sgMsh2	145030506	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.052	149	0	0	NA	exonic	Gm4871	frameshift deletion	Gm4871:NM_001101463:exon4:c.417delT:p.F139Lfs*8	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr5	145984894	DC1638tail	autochthonous	sgMsh2	145984894	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	254	0	0	NA	exonic	Cyp3a25	nonsynonymous SNV	Cyp3a25:NM_019792:exon11:c.A1229C:p.E410A	5qG2	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.331633174	2	0.7872174	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	146493590	DC1638tail	autochthonous	sgMsh2	146493590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	200	0	0	NA	exonic	Gm6370	nonsynonymous SNV	"Gm6370:NM_001374732:exon4:c.C536T:p.A179V,Gm6370:NM_001374731:exon5:c.C584T:p.A195V"	5qG3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	147678262	DC1638tail	autochthonous	sgMsh2	147678262	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	146	86	0	0	exonic	Flt1	nonsynonymous SNV	"Flt1:NM_001363135:exon7:c.T873A:p.N291K,Flt1:NM_010228:exon7:c.T873A:p.N291K"	5qG3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	2	0.9561011	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	147886663	DC1638tail	autochthonous	sgMsh2	147886663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	172	5	0	0	exonic	Slc46a3	nonsynonymous SNV	"Slc46a3:NM_001357002:exon3:c.A368G:p.Y123C,Slc46a3:NM_027872:exon3:c.A368G:p.Y123C"	5qG3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	149429802	DC1638tail	autochthonous	sgMsh2	149429802	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	192	35	7	0.2	exonic	Medag	nonsynonymous SNV	"Medag:NM_001356995:exon5:c.T461G:p.V154G,Medag:NM_027519:exon5:c.T803G:p.V268G"	5qG3	chr5-3344423-150466497	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	2	0.5894216	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr5	150647021	DC1638tail	autochthonous	sgMsh2	150647021	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	171	87	6	0.068965517	exonic	N4bp2l2	nonsynonymous SNV	"N4bp2l2:NM_001362416:exon5:c.T1506G:p.F502L,N4bp2l2:NM_201369:exon5:c.T1506G:p.F502L"	5qG3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	4624299	DC1638tail	autochthonous	sgMsh2	4624299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	223	24	3	0.125	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T242C:p.L81S,Casd1:NM_001379144:exon6:c.T707C:p.L236S,Casd1:NM_001379143:exon9:c.T1091C:p.L364S,Casd1:NM_145398:exon9:c.T1091C:p.L364S"	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.945868	TTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	5491627	DC1638tail	autochthonous	sgMsh2	5491627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	261	12	1	0.083333333	exonic	Pdk4	nonsynonymous SNV	Pdk4:NM_013743:exon5:c.A580G:p.I194V	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.9986784	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	8013113	DC1638tail	autochthonous	sgMsh2	8013113	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.391	107	0	0	NA	exonic	Col28a1	frameshift deletion	Col28a1:NM_001037865:exon33:c.2938delA:p.I980Ffs*58	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1638T5	chr6	11997110	DC1638tail	autochthonous	sgMsh2	11997110	A	C	SNV	Mutect2;Vardict	2	0.044	103	152	4	0.026315789	exonic	Phf14	synonymous SNV	"Phf14:NM_001362122:exon13:c.A1542C:p.R514R,Phf14:NM_001362123:exon13:c.A1542C:p.R514R,Phf14:NM_001168382:exon14:c.A2376C:p.R792R,Phf14:NM_029404:exon14:c.A2376C:p.R792R"	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.211476227	3	0.9981914	GAT	synonymous	NA	NA	NA	NA
DC1638T5	chr6	14719712	DC1638tail	autochthonous	sgMsh2	14719712	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	216	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.A1202G:p.H401R	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9986461	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	15799761	DC1638tail	autochthonous	sgMsh2	15799761	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	250	116	3	0.025862069	exonic	Mdfic	nonsynonymous SNV	Mdfic:NM_175088:exon5:c.A640G:p.S214G	6qA1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	1.93E-09	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	24796122	DC1638tail	autochthonous	sgMsh2	24796122	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	201	0	0	NA	exonic	Spam1	nonsynonymous SNV	"Spam1:NM_009241:exon2:c.T71C:p.V24A,Spam1:NM_001079875:exon3:c.T71C:p.V24A"	6qA3.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	29489114	DC1638tail	autochthonous	sgMsh2	29489114	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	32	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon29:c.C3172T:p.R1058W	6qA3.3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	0.971782	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	30626348	DC1638tail	autochthonous	sgMsh2	30626348	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	310	0	0	NA	exonic	Cpa5	nonsynonymous SNV	Cpa5:NM_144537:exon8:c.T707C:p.I236T	6qA3.3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	1.80E-09	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	34798277	DC1638tail	autochthonous	sgMsh2	34798277	A	G	SNV	Mutect2;Vardict	2	0.043	152	10	0	0	exonic	Agbl3	nonsynonymous SNV	"Agbl3:NM_178630:exon6:c.A502G:p.T168A,Agbl3:NM_001289656:exon7:c.A517G:p.T173A"	6qB1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999191	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	41523905	DC1638tail	autochthonous	sgMsh2	41523905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	442	11	2	0.181818182	exonic	Prss2	nonsynonymous SNV	Prss2:NM_009430:exon3:c.A251G:p.N84S	6qB1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.9999971	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	42314088	DC1638tail	autochthonous	sgMsh2	42314088	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	69	3	0	0	exonic	Clcn1	synonymous SNV	"Clcn1:NM_013491:exon23:c.C2895T:p.S965S,Clcn1:NM_001363712:exon24:c.C2205T:p.S735S"	6qB2.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	2	0.9868998	GCC	synonymous	NA	NA	NA	NA
DC1638T5	chr6	42363570	DC1638tail	autochthonous	sgMsh2	42363570	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	51	19	3	0.157894737	exonic	Epha1	nonsynonymous SNV	Epha1:NM_023580:exon10:c.T1766G:p.V589G	6qB2.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.917999075	1	0.9889539	GAC	nonsynonymous	TCGA	8	TCGATCGA	NA
DC1638T5	chr6	43273994	DC1638tail	autochthonous	sgMsh2	43273994	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	104	169	0	0	exonic	Arhgef5	nonsynonymous SNV	Arhgef5:NM_133674:exon2:c.G1678A:p.A560T	6qB2.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.312408062	3	0.7025946	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	43280311	DC1638tail	autochthonous	sgMsh2	43280311	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	154	198	9	0.045454545	exonic	Arhgef5	synonymous SNV	Arhgef5:NM_133674:exon7:c.A3795G:p.L1265L	6qB2.1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9998433	TAA	synonymous	NA	NA	NA	NA
DC1638T5	chr6	48724226	DC1638tail	autochthonous	sgMsh2	48724226	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	135	1	0	0	exonic	Gimap7	frameshift deletion	Gimap7:NM_146167:exon2:c.745delA:p.I251Yfs*9	6qB2.3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr6	52733301	DC1638tail	autochthonous	sgMsh2	52733301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	132	406	33	0.081280788	exonic	Tax1bp1	synonymous SNV	"Tax1bp1:NM_001355595:exon5:c.A564G:p.E188E,Tax1bp1:NM_001355596:exon5:c.A564G:p.E188E,Tax1bp1:NM_025816:exon5:c.A564G:p.E188E"	6qB3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9991403	AAC	synonymous	GA	8	GAGAGAGA	NA
DC1638T5	chr6	54616671	DC1638tail	autochthonous	sgMsh2	54616671	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	143	41	4	0.097560976	exonic	Plekha8	nonsynonymous SNV	"Plekha8:NM_001001335:exon4:c.T217C:p.S73P,Plekha8:NM_001164361:exon4:c.T352C:p.S118P"	6qB3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999677	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	58843824	DC1638tail	autochthonous	sgMsh2	58843824	G	A	SNV	Mutect2;Vardict	2	0.05	82	37	0	0	exonic	Herc3	synonymous SNV	"Herc3:NM_001361967:exon2:c.G192A:p.G64G,Herc3:NM_028705:exon2:c.G192A:p.G64G,Herc3:NM_001361966:exon3:c.G192A:p.G64G"	6qB3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9802475	GGC	synonymous	NA	NA	NA	NA
DC1638T5	chr6	72234702	DC1638tail	autochthonous	sgMsh2	72234702	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	77	10	0	0	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon1:c.T463A:p.L155M	6qC1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9123354	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	72558742	DC1638tail	autochthonous	sgMsh2	72558742	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	86	1029	11	0.01068999	exonic	Capg	nonsynonymous SNV	"Capg:NM_001042534:exon8:c.T766G:p.S256A,Capg:NM_001271395:exon8:c.T766G:p.S256A,Capg:NM_007599:exon8:c.T766G:p.S256A,Capg:NM_001271415:exon9:c.T766G:p.S256A"	6qC1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7766353	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	72577632	DC1638tail	autochthonous	sgMsh2	72577632	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	109	20	0	0	exonic	Elmod3	synonymous SNV	"Elmod3:NM_001253692:exon7:c.T417A:p.L139L,Elmod3:NM_001364554:exon7:c.T417A:p.L139L,Elmod3:NM_144917:exon8:c.T417A:p.L139L,Elmod3:NM_001364553:exon9:c.T417A:p.L139L"	6qC1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.942545	AAA	synonymous	NA	NA	NA	NA
DC1638T5	chr6	72631321	DC1638tail	autochthonous	sgMsh2	72631321	T	-	Deletion	Mutect2;Vardict	2	0.054	149	31	0	0	exonic	Tcf7l1	frameshift deletion	"Tcf7l1:NM_009332:exon9:c.1034delA:p.K345Sfs*2,Tcf7l1:NM_001079822:exon10:c.1076delA:p.K359Sfs*2"	6qC1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.259539005	NA	NA	CTT	frameshift	T	5	TTTTT	-1
DC1638T5	chr6	83056414	DC1638tail	autochthonous	sgMsh2	83056414	T	-	Deletion	Mutect2;Vardict	2	0.041	218	411	3	0.00729927	exonic	Aup1	frameshift deletion	"Aup1:NM_001301649:exon6:c.331delT:p.F111Lfs*15,Aup1:NM_007517:exon7:c.805delT:p.F269Lfs*15"	6qC3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	NA	NA	GTT	frameshift	NA	NA	NA	-1
DC1638T5	chr6	84853668	DC1638tail	autochthonous	sgMsh2	84853668	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	147	38	14	0.368421053	exonic	Exoc6b	nonsynonymous SNV	Exoc6b:NM_177077:exon14:c.C1349A:p.S450Y	6qC3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	1.34E-09	AGA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	90108123	DC1638tail	autochthonous	sgMsh2	90108123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	300	0	0	NA	exonic	Vmn1r50	synonymous SNV	Vmn1r50:NM_053225:exon1:c.A849G:p.T283T	6qD1	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.47582151	2	1.03E-09	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr6	94624965	DC1638tail	autochthonous	sgMsh2	94624965	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.123	58	12	1	0.083333333	exonic	Lrig1	synonymous SNV	"Lrig1:NM_001355269:exon7:c.T906C:p.R302R,Lrig1:NM_008377:exon7:c.T906C:p.R302R"	6qD2	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.591172179	2	0.9819625	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr6	94624971	DC1638tail	autochthonous	sgMsh2	94624971	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	57	18	1	0.055555556	exonic	Lrig1	nonsynonymous SNV	"Lrig1:NM_001355269:exon7:c.T900G:p.I300M,Lrig1:NM_008377:exon7:c.T900G:p.I300M"	6qD2	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.610397291	2	0.9686073	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	97131373	DC1638tail	autochthonous	sgMsh2	97131373	A	G	SNV	Mutect2;Vardict	2	0.027	209	31	3	0.096774194	exonic	Eogt	nonsynonymous SNV	Eogt:NM_175313:exon9:c.T706C:p.Y236H	6qD3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	1.64E-09	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	97185667	DC1638tail	autochthonous	sgMsh2	97185667	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	376	516	5	0.009689922	exonic	Uba3	synonymous SNV	"Uba3:NM_001111106:exon14:c.A1125C:p.L375L,Uba3:NM_001301858:exon14:c.A1086C:p.L362L,Uba3:NM_001301857:exon15:c.A1104C:p.L368L,Uba3:NM_001301859:exon15:c.A1167C:p.L389L,Uba3:NM_011666:exon15:c.A1167C:p.L389L"	6qD3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	1.00E-09	TTA	synonymous	NA	NA	NA	NA
DC1638T5	chr6	97229572	DC1638tail	autochthonous	sgMsh2	97229572	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	91	317	3	0.009463722	exonic	Arl6ip5	nonsynonymous SNV	Arl6ip5:NM_022992:exon2:c.T212C:p.V71A	6qD3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.09950128	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	98945374	DC1638tail	autochthonous	sgMsh2	98945374	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	359	145	7	0.048275862	exonic	Foxp1	synonymous SNV	"Foxp1:NM_001197322:exon10:c.A1098G:p.P366P,Foxp1:NM_001197321:exon13:c.A1389G:p.P463P,Foxp1:NM_053202:exon14:c.A1485G:p.P495P,Foxp1:NM_001347345:exon15:c.A1485G:p.P495P"	6qD3	chr6-3494310-113068119	4	3	1	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	8.28E-09	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr6	119317326	DC1638tail	autochthonous	sgMsh2	119317326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	106	0	0	NA	exonic	Lrtm2	synonymous SNV	"Lrtm2:NM_001172207:exon5:c.T843C:p.P281P,Lrtm2:NM_172492:exon5:c.T843C:p.P281P"	6qF1	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.644041236	2	0.9647737	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr6	121381715	DC1638tail	autochthonous	sgMsh2	121381715	T	C	SNV	Mutect2;Vardict	2	0.06	72	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon11:c.A2110G:p.K704E,Iqsec3:NM_001033354:exon12:c.A3010G:p.K1004E"	6qF1	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.8433729	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	125109357	DC1638tail	autochthonous	sgMsh2	125109357	A	T	SNV	Mutect2;Vardict	2	0.045	143	409	9	0.02200489	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon19:c.A2819T:p.H940L,Chd4:NM_145979:exon19:c.A2819T:p.H940L"	6qF2	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.999719	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	125281040	DC1638tail	autochthonous	sgMsh2	125281040	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	292	0	0	NA	exonic	Tuba3a	nonsynonymous SNV	Tuba3a:NM_009446:exon4:c.A986C:p.N329T	6qF3	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.422952453	2	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	129184189	DC1638tail	autochthonous	sgMsh2	129184189	A	G	SNV	Mutect2;Vardict	2	0.021	431	36	0	0	exonic	Clec2d	nonsynonymous SNV	Clec2d:NM_053109:exon3:c.A248G:p.N83S	6qF3	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.100931835	3	1	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	133036836	DC1638tail	autochthonous	sgMsh2	133036836	A	G	SNV	Mutect2;Vardict	2	0.029	179	0	0	NA	exonic	Tas2r103	nonsynonymous SNV	Tas2r103:NM_053211:exon1:c.T266C:p.L89P	6qG1	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	3.13E-08	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	135209114	DC1638tail	autochthonous	sgMsh2	135209114	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	131	3	0	0	exonic	Fam234b	nonsynonymous SNV	"Fam234b:NM_001362110:exon2:c.A119G:p.N40S,Fam234b:NM_028982:exon2:c.A119G:p.N40S"	6qG1	chr6-113104747-145247059	5	3	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.326826896	2	0.5151419	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	145427469	DC1638tail	autochthonous	sgMsh2	145427469	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	92	0	0	NA	exonic	Lmntd1	nonsynonymous SNV	Lmntd1:NM_028742:exon5:c.A337C:p.S113R	6qG3	chr6-145397053-149014300	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.350858285	2	0.7366324	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr6	147026259	DC1638tail	autochthonous	sgMsh2	147026259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	133	350	64	0.182857143	exonic	Ppfibp1	synonymous SNV	"Ppfibp1:NM_026221:exon23:c.T2370C:p.S790S,Ppfibp1:NM_001170433:exon24:c.T2403C:p.S801S,Ppfibp1:NM_001355729:exon24:c.T2370C:p.S790S,Ppfibp1:NM_001355728:exon27:c.T2559C:p.S853S"	6qG3	chr6-145397053-149014300	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.754585627	1	0.9703086	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr6	149511827	DC1638tail	autochthonous	sgMsh2	149511827	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	221	11	0	0	exonic	Bicd1	stopgain	"Bicd1:NM_001112796:exon4:c.A715T:p.K239X,Bicd1:NM_009753:exon4:c.A715T:p.K239X"	6qG3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	7387084	DC1638tail	autochthonous	sgMsh2	7387084	T	-	Deletion	Mutect2;Vardict	2	0.034	257	0	0	NA	exonic	Vmn2r31	frameshift deletion	"Vmn2r31:NM_001105062:exon5:c.1634delA:p.N545Mfs*12,Vmn2r31:NM_001385037:exon5:c.1634delA:p.N545Mfs*14"	7qA1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	NA	NA	ATT	frameshift	NA	NA	NA	-1
DC1638T5	chr7	12891358	DC1638tail	autochthonous	sgMsh2	12891358	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	130	5	0	0	exonic	Zfp128	nonsynonymous SNV	Zfp128:NM_153802:exon4:c.A1652T:p.H551L	7qA1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9994399	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	15952154	DC1638tail	autochthonous	sgMsh2	15952154	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	110	197	37	0.187817259	exonic	Ehd2	nonsynonymous SNV	Ehd2:NM_153068:exon5:c.T992G:p.L331R	7qA2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	0.9969332	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	16563481	DC1638tail	autochthonous	sgMsh2	16563481	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	200	99	0	0	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1658T:p.H553L	7qA2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9997187	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	18794088	DC1638tail	autochthonous	sgMsh2	18794088	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	396	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon3:c.A729T:p.R243R	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	1	TTC	synonymous	NA	NA	NA	NA
DC1638T5	chr7	19279685	DC1638tail	autochthonous	sgMsh2	19279685	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	27	1	0	0	exonic	Ppm1n	nonsynonymous SNV	Ppm1n:NM_177691:exon1:c.T340A:p.Y114N	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.961255576	1	0.09711914	TAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	19358012	DC1638tail	autochthonous	sgMsh2	19358012	T	C	SNV	Mutect2;Vardict	2	0.07	63	42	0	0	exonic	Cd3eap	nonsynonymous SNV	Cd3eap:NM_145822:exon3:c.A169G:p.N57D	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.5107227	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	19375534	DC1638tail	autochthonous	sgMsh2	19375534	A	C	SNV	Mutect2;Vardict	2	0.052	86	71	3	0.042253521	exonic	Ppp1r13l	nonsynonymous SNV	Ppp1r13l:NM_001010836:exon10:c.A1985C:p.N662T	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9742323	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	24275056	DC1638tail	autochthonous	sgMsh2	24275056	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	186	10	0	0	exonic	Zfp93	synonymous SNV	"Zfp93:NM_009567:exon4:c.C465T:p.H155H,Zfp93:NM_001360227:exon5:c.C519T:p.H173H"	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.418146176	2	0.9999036	ACT	synonymous	NA	NA	NA	NA
DC1638T5	chr7	25628455	DC1638tail	autochthonous	sgMsh2	25628455	C	-	Deletion	Mutect2;Vardict	2	0.057	99	4	0	0	exonic	B3gnt8	frameshift deletion	"B3gnt8:NM_146184:exon1:c.309delC:p.Q105Rfs*54,B3gnt8:NM_001036740:exon2:c.309delC:p.Q105Rfs*54"	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1638T5	chr7	25697259	DC1638tail	autochthonous	sgMsh2	25697259	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	85	475	10	0.021052632	exonic	Tgfb1	nonsynonymous SNV	Tgfb1:NM_011577:exon5:c.A847T:p.N283Y	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.288376673	3	0.8678114	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	26200776	DC1638tail	autochthonous	sgMsh2	26200776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	545	0	0	NA	exonic	Cyp2b9	synonymous SNV	Cyp2b9:NM_010000:exon7:c.G1008A:p.R336R	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.427758731	2	1.00E-09	GGC	synonymous	NA	NA	NA	NA
DC1638T5	chr7	26837095	DC1638tail	autochthonous	sgMsh2	26837095	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	322	3	0	0	exonic	Cyp2a5	synonymous SNV	Cyp2a5:NM_007812:exon4:c.T498G:p.A166A	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.571947068	2	1.17E-08	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr7	27032604	DC1638tail	autochthonous	sgMsh2	27032604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	202	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.A769G:p.T257A	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.538303123	2	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	27197026	DC1638tail	autochthonous	sgMsh2	27197026	T	C	SNV	Mutect2;Vardict	2	0.074	59	19	1	0.052631579	exonic	BC024978	nonsynonymous SNV	"BC024978:NM_001243888:exon2:c.T13C:p.C5R,BC024978:NM_001290511:exon2:c.T13C:p.C5R,BC024978:NM_001290513:exon2:c.T13C:p.C5R"	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.355664563	2	0.645263	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	28117547	DC1638tail	autochthonous	sgMsh2	28117547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	124	5	0	0	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon18:c.A7433G:p.D2478G	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	0.9999672	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	28378108	DC1638tail	autochthonous	sgMsh2	28378108	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	150	123	12	0.097560976	exonic	Zfp36	nonsynonymous SNV	Zfp36:NM_011756:exon2:c.A410C:p.E137A	7qA3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	3	0.6462139	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	29190458	DC1638tail	autochthonous	sgMsh2	29190458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	331	0	0	NA	exonic	Catsperg1	nonsynonymous SNV	"Catsperg1:NM_001164658:exon18:c.T2164C:p.F722L,Catsperg1:NM_001368407:exon18:c.T2323C:p.F775L"	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.557528234	2	1.63E-09	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	30311864	DC1638tail	autochthonous	sgMsh2	30311864	T	C	SNV	Mutect2;Vardict	2	0.046	129	77	2	0.025974026	exonic	Alkbh6	nonsynonymous SNV	Alkbh6:NM_198027:exon4:c.T148C:p.W50R	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9991824	GTG	nonsynonymous	CCAAAG	12	CCAAAGCCAAAG	NA
DC1638T5	chr7	30590643	DC1638tail	autochthonous	sgMsh2	30590643	T	A	SNV	Mutect2;Vardict	2	0.064	68	1	0	0	exonic	Zbtb32	nonsynonymous SNV	Zbtb32:NM_021397:exon4:c.A945T:p.Q315H	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7183745	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	30720557	DC1638tail	autochthonous	sgMsh2	30720557	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	176	2	0	0	exonic	Atp4a	nonsynonymous SNV	"Atp4a:NM_001290627:exon15:c.T2245G:p.S749A,Atp4a:NM_018731:exon15:c.T2218G:p.S740A"	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9936002	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	30728059	DC1638tail	autochthonous	sgMsh2	30728059	T	C	SNV	Mutect2;Vardict	2	0.027	199	280	0	0	exonic	Tmem147	nonsynonymous SNV	Tmem147:NM_027215:exon6:c.A479G:p.D160G	7qB1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.129769503	3	2.71E-09	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	35371230	DC1638tail	autochthonous	sgMsh2	35371230	T	A	SNV	Mutect2;Vardict	2	0.063	73	16	0	0	exonic	Rhpn2	nonsynonymous SNV	Rhpn2:NM_027897:exon6:c.T584A:p.L195Q	7qB2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7588422	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	41289455	DC1638tail	autochthonous	sgMsh2	41289455	A	G	SNV	Mutect2;Vardict	2	0.026	249	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon3:c.A2160G:p.P720P	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1.01E-09	CAA	synonymous	NA	NA	NA	NA
DC1638T5	chr7	43411185	DC1638tail	autochthonous	sgMsh2	43411185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	90	2	0	0	exonic	Siglecg	nonsynonymous SNV	"Siglecg:NM_001382486:exon6:c.A988G:p.T330A,Siglecg:NM_172900:exon6:c.A988G:p.T330A"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.485434066	2	0.9993162	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	44503668	DC1638tail	autochthonous	sgMsh2	44503668	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.128	84	2	0	0	exonic	Mybpc2	frameshift deletion	Mybpc2:NM_146189:exon27:c.3369delA:p.A1124Pfs*20	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.615203569	NA	NA	CTT	frameshift	C	5	CCCCC	-1
DC1638T5	chr7	44581317	DC1638tail	autochthonous	sgMsh2	44581317	T	A	SNV	Mutect2;Vardict	2	0.025	211	1096	1	0.000912409	exonic	Napsa	nonsynonymous SNV	Napsa:NM_008437:exon2:c.T188A:p.V63E	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.120156947	3	1.18E-09	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	44734204	DC1638tail	autochthonous	sgMsh2	44734204	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	128	2	2	1	exonic	Zfp473	nonsynonymous SNV	"Zfp473:NM_001289836:exon5:c.A704C:p.E235A,Zfp473:NM_001289837:exon5:c.A704C:p.E235A,Zfp473:NM_001289838:exon5:c.A701C:p.E234A,Zfp473:NM_001289839:exon5:c.A701C:p.E234A,Zfp473:NM_178734:exon5:c.A704C:p.E235A"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.245120172	3	0.9956937	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	44828865	DC1638tail	autochthonous	sgMsh2	44828865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	99	106	50	0.471698113	exonic	Nup62	synonymous SNV	Nup62:NM_053074:exon2:c.T303C:p.S101S	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	0.9999993	GTA	synonymous	NA	NA	NA	NA
DC1638T5	chr7	44899089	DC1638tail	autochthonous	sgMsh2	44899089	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	86	6	0	0	exonic	Fuz	synonymous SNV	Fuz:NM_027376:exon8:c.T891A:p.L297L	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9911394	TTG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	44950836	DC1638tail	autochthonous	sgMsh2	44950836	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	183	0	0	NA	exonic	Tsks	nonsynonymous SNV	"Tsks:NM_001077591:exon3:c.A451G:p.K151E,Tsks:NM_011651:exon3:c.A451G:p.K151E"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9966118	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	45827884	DC1638tail	autochthonous	sgMsh2	45827884	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	51	111	14	0.126126126	exonic	Grwd1	nonsynonymous SNV	Grwd1:NM_153419:exon4:c.T578A:p.L193Q	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.783423294	1	0.7523898	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	46771950	DC1638tail	autochthonous	sgMsh2	46771950	A	G	SNV	Mutect2;Vardict	2	0.041	153	31	0	0	exonic	Hps5	synonymous SNV	"Hps5:NM_001005247:exon16:c.T2088C:p.T696T,Hps5:NM_001005248:exon16:c.T2088C:p.T696T,Hps5:NM_001167864:exon16:c.T1989C:p.T663T"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.197057393	3	0.9999647	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	46850221	DC1638tail	autochthonous	sgMsh2	46850221	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	107	4351	13	0.002987819	exonic	Ldha	frameshift deletion	"Ldha:NM_001136069:exon4:c.375delG:p.A127Pfs*16,Ldha:NM_010699:exon4:c.288delG:p.A98Pfs*16"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	NA	NA	CGG	frameshift	G	5	GGGGG	-1
DC1638T5	chr7	47082784	DC1638tail	autochthonous	sgMsh2	47082784	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	3	1	0.333333333	exonic	Ptpn5	nonsynonymous SNV	"Ptpn5:NM_001163565:exon10:c.A1123G:p.T375A,Ptpn5:NM_013643:exon10:c.A1123G:p.T375A"	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	2	0.9966657	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	47589840	DC1638tail	autochthonous	sgMsh2	47589840	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	290	0	0	NA	exonic	Mrgpra3	nonsynonymous SNV	Mrgpra3:NM_153067:exon2:c.T337A:p.C113S	7qB3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	1.16E-09	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	48643262	DC1638tail	autochthonous	sgMsh2	48643262	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	222	2	0	0	exonic	Mrgprb3	synonymous SNV	Mrgprb3:NM_207537:exon1:c.T540C:p.N180N	7qB4	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999997	TAT	synonymous	NA	NA	NA	NA
DC1638T5	chr7	51566340	DC1638tail	autochthonous	sgMsh2	51566340	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	270	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon10:c.G1022A:p.R341K,Ano5:NM_177694:exon11:c.G1064A:p.R355K"	7qB4	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9996989	AGA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	65313308	DC1638tail	autochthonous	sgMsh2	65313308	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	172	107	7	0.065420561	exonic	Tjp1	synonymous SNV	"Tjp1:NM_001163574:exon20:c.A2880G:p.E960E,Tjp1:NM_009386:exon21:c.A3120G:p.E1040E"	7qC	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	0.9999999	GTT	synonymous	NA	NA	NA	NA
DC1638T5	chr7	65342685	DC1638tail	autochthonous	sgMsh2	65342685	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	279	80	1	0.0125	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon4:c.T244G:p.S82A,Tjp1:NM_009386:exon4:c.T244G:p.S82A"	7qC	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	2.49E-09	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	80100829	DC1638tail	autochthonous	sgMsh2	80100829	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	93	151	6	0.039735099	exonic	Idh2	nonsynonymous SNV	Idh2:NM_173011:exon3:c.T287G:p.V96G	7qD2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9949741	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	80100849	DC1638tail	autochthonous	sgMsh2	80100849	A	G	SNV	Mutect2;Vardict	2	0.046	96	154	3	0.019480519	exonic	Idh2	synonymous SNV	Idh2:NM_173011:exon3:c.T267C:p.R89R	7qD2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9956784	CAC	synonymous	TGGTC	10	TGGTCTGGTC	NA
DC1638T5	chr7	81094998	DC1638tail	autochthonous	sgMsh2	81094998	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	156	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon7:c.T3840A:p.S1280R	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.38450223	2	0.9926539	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	82595368	DC1638tail	autochthonous	sgMsh2	82595368	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	144	5	2	0.4	exonic	Adamtsl3	nonsynonymous SNV	Adamtsl3:NM_001190374:exon24:c.A4031T:p.N1344I	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	2	0.9930876	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	84963891	DC1638tail	autochthonous	sgMsh2	84963891	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	194	0	0	NA	exonic	Vmn2r65	nonsynonymous SNV	Vmn2r65:NM_001105180:exon1:c.A119G:p.D40G	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.182638559	3	0.9999994	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	85619544	DC1638tail	autochthonous	sgMsh2	85619544	T	A	SNV	Mutect2;Vardict	2	0.022	387	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon3:c.T942A:p.F314L	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.105738113	3	1	TTA	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr7	86166292	DC1638tail	autochthonous	sgMsh2	86166292	A	G	SNV	Mutect2;Vardict	2	0.034	204	0	0	NA	exonic	Vmn2r75	synonymous SNV	Vmn2r75:NM_001102578:exon2:c.T363C:p.S121S	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	3.94E-08	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr7	86269080	DC1638tail	autochthonous	sgMsh2	86269080	A	T	SNV	Mutect2;Vardict	2	0.024	270	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.T708A:p.F236L	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	3	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	86412891	DC1638tail	autochthonous	sgMsh2	86412891	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.021	311	0	0	NA	exonic	Olfr301	nonsynonymous SNV	Olfr301:NM_212436:exon3:c.C528G:p.F176L	7qD3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.100931835	3	1	TCT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	97550640	DC1638tail	autochthonous	sgMsh2	97550640	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	110	62	4	0.064516129	exonic	Aamdc	nonsynonymous SNV	"Aamdc:NM_001177947:exon3:c.A234T:p.Q78H,Aamdc:NM_001177946:exon4:c.A318T:p.Q106H,Aamdc:NM_183251:exon4:c.A330T:p.Q110H,Aamdc:NM_001177945:exon5:c.A414T:p.Q138H"	7qE1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9986632	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	97670881	DC1638tail	autochthonous	sgMsh2	97670881	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	188	49	9	0.183673469	exonic	Rsf1	synonymous SNV	Rsf1:NM_001081267:exon9:c.A2908C:p.R970R	7qE1	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	2	0.9842618	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	100285636	DC1638tail	autochthonous	sgMsh2	100285636	T	C	SNV	Mutect2;Vardict	2	0.158	23	11	0	0	exonic	P4ha3	nonsynonymous SNV	P4ha3:NM_177161:exon1:c.T104C:p.V35A	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.759391905	2	0.6460645	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	100507496	DC1638tail	autochthonous	sgMsh2	100507496	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	98	3	0	0	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon4:c.T372A:p.N124K	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.297989229	3	0.8299852	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	101400472	DC1638tail	autochthonous	sgMsh2	101400472	G	A	SNV	Mutect2;Vardict	2	0.045	100	51	0	0	exonic	Arap1	nonsynonymous SNV	"Arap1:NM_198096:exon9:c.G898A:p.A300T,Arap1:NM_027180:exon18:c.G2296A:p.A766T,Arap1:NM_001040112:exon19:c.G2296A:p.A766T,Arap1:NM_001040111:exon22:c.G3040A:p.A1014T"	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9972525	CGC	nonsynonymous	ACGC	8	ACGCACGC	NA
DC1638T5	chr7	102001625	DC1638tail	autochthonous	sgMsh2	102001625	G	T	SNV	Mutect2;Vardict	2	0.036	155	105	3	0.028571429	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon14:c.G4562T:p.R1521M	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999956	AGG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	102139525	DC1638tail	autochthonous	sgMsh2	102139525	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	131	102	19	0.18627451	exonic	Nup98	synonymous SNV	"Nup98:NM_001287164:exon21:c.T2919G:p.P973P,Nup98:NM_001287165:exon21:c.T2868G:p.P956P,Nup98:NM_022979:exon21:c.T2919G:p.P973P"	7qE2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.595978457	2	0.9989211	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	102713629	DC1638tail	autochthonous	sgMsh2	102713629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	488	0	0	NA	exonic	Olfr33	synonymous SNV	Olfr33:NM_147073:exon1:c.A783C:p.P261P	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.624816124	2	0.9999994	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	104688651	DC1638tail	autochthonous	sgMsh2	104688651	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	247	0	0	NA	exonic	Olfr661	nonsynonymous SNV	Olfr661:NM_146748:exon1:c.T635A:p.L212H	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.05E-09	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	104841289	DC1638tail	autochthonous	sgMsh2	104841289	T	C	SNV	Mutect2;Vardict	2	0.019	506	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.A427G:p.T143A,Usp17lb:NM_201409:exon2:c.A430G:p.T144A"	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.09131928	3	1	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	105762037	DC1638tail	autochthonous	sgMsh2	105762037	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	83	0	0	NA	exonic	Dchs1	synonymous SNV	Dchs1:NM_001162943:exon11:c.C4780T:p.L1594L	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7337543	AGC	synonymous	NA	NA	NA	NA
DC1638T5	chr7	106601696	DC1638tail	autochthonous	sgMsh2	106601696	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	251	0	0	NA	exonic	Gm1966	nonsynonymous SNV	"Gm1966:NM_001277179:exon3:c.A2340G:p.I780M,Gm1966:NM_001277180:exon3:c.A2340G:p.I780M,Gm1966:NM_001277181:exon4:c.A2340G:p.I780M,Gm1966:NM_001277182:exon4:c.A2340G:p.I780M,Gm1966:NM_001277183:exon6:c.A2340G:p.I780M"	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	6.74E-09	GTA	nonsynonymous	TGT	9	TGTTGTTGT	NA
DC1638T5	chr7	106603658	DC1638tail	autochthonous	sgMsh2	106603658	T	G	SNV	Mutect2;MuSe;Vardict	3	0.071	262	2	0	0	exonic	Gm1966	synonymous SNV	"Gm1966:NM_001277179:exon3:c.A378C:p.A126A,Gm1966:NM_001277180:exon3:c.A378C:p.A126A,Gm1966:NM_001277181:exon4:c.A378C:p.A126A,Gm1966:NM_001277182:exon4:c.A378C:p.A126A,Gm1966:NM_001277183:exon6:c.A378C:p.A126A"	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.341245729	2	0.9364174	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	108646376	DC1638tail	autochthonous	sgMsh2	108646376	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	238	0	0	NA	exonic	Olfr509	frameshift deletion	Olfr509:NM_146372:exon1:c.199delT:p.S67Qfs*7	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.672878903	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr7	108938100	DC1638tail	autochthonous	sgMsh2	108938100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	150	1154	142	0.12305026	exonic	Eif3f	nonsynonymous SNV	Eif3f:NM_025344:exon3:c.A512G:p.E171G	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.509465455	2	0.9999987	GAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	111078278	DC1638tail	autochthonous	sgMsh2	111078278	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	282	1312	49	0.037347561	exonic	Eif4g2	nonsynonymous SNV	"Eif4g2:NM_001040131:exon7:c.T545G:p.V182G,Eif4g2:NM_013507:exon7:c.T545G:p.V182G"	7qE3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9999985	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	118726607	DC1638tail	autochthonous	sgMsh2	118726607	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	233	22	0	0	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon9:c.A2448G:p.Q816Q,Ccp110:NM_001360794:exon9:c.A2451G:p.Q817Q,Ccp110:NM_182995:exon9:c.A2451G:p.Q817Q"	7qF2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9999957	AAA	synonymous	NA	NA	NA	NA
DC1638T5	chr7	120778466	DC1638tail	autochthonous	sgMsh2	120778466	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	151	1	0	0	exonic	Vwa3a	nonsynonymous SNV	Vwa3a:NM_177697:exon15:c.T1343C:p.L448P	7qF2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.254732728	3	0.9961444	CTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	120958185	DC1638tail	autochthonous	sgMsh2	120958185	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	121	49	1	0.020408163	exonic	Cdr2	synonymous SNV	"Cdr2:NM_001354986:exon5:c.A510G:p.S170S,Cdr2:NM_007672:exon5:c.A1116G:p.S372S"	7qF2	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9391091	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	123464251	DC1638tail	autochthonous	sgMsh2	123464251	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	96	1	0	0	exonic	Aqp8	nonsynonymous SNV	"Aqp8:NM_001109045:exon3:c.T320C:p.M107T,Aqp8:NM_007474:exon3:c.T323C:p.M108T"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.379695952	2	0.9276898	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	125572933	DC1638tail	autochthonous	sgMsh2	125572933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	163	341	24	0.070381232	exonic	Il4ra	synonymous SNV	"Il4ra:NM_001008700:exon8:c.T756C:p.C252C,Il4ra:NM_001363983:exon9:c.T87C:p.C29C"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.336439452	2	0.7390127	GTT	synonymous	CTGTT	10	CTGTTCTGTT	NA
DC1638T5	chr7	126372489	DC1638tail	autochthonous	sgMsh2	126372489	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	28	75	0	0	exonic	Spns1	synonymous SNV	Spns1:NM_023712:exon7:c.G888T:p.A296A	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	0.905614	ACG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	126563717	DC1638tail	autochthonous	sgMsh2	126563717	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	90	542	84	0.15498155	exonic	Eif3c	synonymous SNV	Eif3c:NM_146200:exon5:c.T393C:p.N131N	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7407456	TAT	synonymous	T	5	TTTTT	NA
DC1638T5	chr7	126575210	DC1638tail	autochthonous	sgMsh2	126575210	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	163	67	0	0	exonic	Cln3	nonsynonymous SNV	"Cln3:NM_001329789:exon11:c.T883C:p.Y295H,Cln3:NM_009907:exon12:c.T955C:p.Y319H,Cln3:NM_001146311:exon15:c.T955C:p.Y319H"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.22589506	3	0.9997788	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	126585697	DC1638tail	autochthonous	sgMsh2	126585697	A	T	SNV	Mutect2;Vardict	2	0.078	51	17	0	0	exonic	Apobr	nonsynonymous SNV	Apobr:NM_138310:exon2:c.A379T:p.S127C	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	7.60E-05	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	127384919	DC1638tail	autochthonous	sgMsh2	127384920	TC	AG	DBS	Mutect2;Vardict	2	0.117	494	4	0	0	exonic	9130019O22Rik	nonframeshift substitution	9130019O22Rik:NM_030226:exon3:c.1009_1010CT:p.D337L	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.562334512	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	127531464	DC1638tail	autochthonous	sgMsh2	127531464	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	163	29	2	0.068965517	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon14:c.A2159G:p.K720R	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999918	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	127587921	DC1638tail	autochthonous	sgMsh2	127587921	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.153	29	22	1	0.045454545	exonic	Ccdc189	nonsynonymous SNV	"Ccdc189:NM_001033040:exon1:c.A169T:p.S57C,Ccdc189:NM_001382406:exon1:c.A169T:p.S57C,Ccdc189:NM_001382407:exon1:c.A169T:p.S57C"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.735360516	2	0.6712443	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	127610587	DC1638tail	autochthonous	sgMsh2	127610587	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	133	9	0	0	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C2049A:p.H683Q,Zfp629:NM_177226:exon3:c.C2049A:p.H683Q,Zfp629:NM_001362197:exon4:c.C2049A:p.H683Q"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.437371287	2	0.9995851	CGT	nonsynonymous	GTGA	9	GTGAGTGAG	NA
DC1638T5	chr7	127889628	DC1638tail	autochthonous	sgMsh2	127889628	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	131	0	0	NA	exonic	Prss53	synonymous SNV	Prss53:NM_001081268:exon3:c.T93C:p.R31R	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	2	0.9372771	CAC	synonymous	AGGGCC	13	AGGGCCAGGGCCA	NA
DC1638T5	chr7	128070656	DC1638tail	autochthonous	sgMsh2	128070656	T	A	SNV	Mutect2;Vardict	2	0.034	226	13	0	0	exonic	Itgam	stopgain	"Itgam:NM_001082960:exon4:c.T266A:p.L89X,Itgam:NM_008401:exon4:c.T266A:p.L89X"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.163413448	3	7.48E-09	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	130729125	DC1638tail	autochthonous	sgMsh2	130729125	A	G	SNV	Mutect2;Vardict	2	0.064	69	93	1	0.010752688	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon3:c.A808G:p.T270A,Tacc2:NM_021314:exon3:c.A808G:p.T270A,Tacc2:NM_206856:exon6:c.A1138G:p.T380A,Tacc2:NM_001004468:exon7:c.A6259G:p.T2087A"	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7194164	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	131321986	DC1638tail	autochthonous	sgMsh2	131321986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	114	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon1:c.T62C:p.L21P	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.586365901	2	0.9987513	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	132078854	DC1638tail	autochthonous	sgMsh2	132078854	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	97	0	0	NA	exonic	Cpxm2	nonsynonymous SNV	Cpxm2:NM_018867:exon6:c.T832C:p.Y278H	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7476164	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	133587345	DC1638tail	autochthonous	sgMsh2	133587345	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	184	0	0	NA	exonic	Tex36	frameshift deletion	Tex36:NM_028654:exon4:c.497delT:p.L166Wfs*24	7qF3	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.692104015	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1638T5	chr7	139986975	DC1638tail	autochthonous	sgMsh2	139986975	A	T	SNV	Mutect2;Vardict	2	0.045	91	46	0	0	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon14:c.T1464A:p.N488K,Adam8:NM_007403:exon14:c.T1467A:p.N489K"	7qF4	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.216282505	3	0.9955772	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	141270001	DC1638tail	autochthonous	sgMsh2	141270001	A	G	SNV	Mutect2;Vardict	2	0.037	115	6	0	0	exonic	Cdhr5	synonymous SNV	"Cdhr5:NM_028069:exon13:c.T1404C:p.G468G,Cdhr5:NM_001114322:exon14:c.T1890C:p.G630G"	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.999878	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chr7	141322552	DC1638tail	autochthonous	sgMsh2	141322552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	87	38	10	0.263157895	exonic	Deaf1	nonsynonymous SNV	"Deaf1:NM_016874:exon4:c.T577C:p.Y193H,Deaf1:NM_001282073:exon5:c.T319C:p.Y107H"	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.490240344	2	0.9992601	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	141482534	DC1638tail	autochthonous	sgMsh2	141482534	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	133	134	3	0.02238806	exonic	Tspan4	nonsynonymous SNV	"Tspan4:NM_001252588:exon2:c.T31C:p.Y11H,Tspan4:NM_053082:exon2:c.T31C:p.Y11H"	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.240313894	3	0.9974487	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	141636494	DC1638tail	autochthonous	sgMsh2	141636494	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	267	0	0	NA	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.A7950G:p.S2650S	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999999	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr7	141996923	DC1638tail	autochthonous	sgMsh2	141996923	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	121	0	0	NA	exonic	Brsk2	nonsynonymous SNV	"Brsk2:NM_001009929:exon16:c.A1582G:p.N528D,Brsk2:NM_001009930:exon16:c.A1582G:p.N528D,Brsk2:NM_029426:exon16:c.A1582G:p.N528D,Brsk2:NM_001276763:exon17:c.A1648G:p.N550D"	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9659839	CAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	143592642	DC1638tail	autochthonous	sgMsh2	143592642	A	G	SNV	Mutect2;Vardict	2	0.052	89	22	0	0	exonic	Cars	nonsynonymous SNV	Cars:NM_013742:exon2:c.T44C:p.I15T	7qF5	chr7-4743149-144450956	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.97677	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	144485048	DC1638tail	autochthonous	sgMsh2	144485048	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	115	133	1	0.007518797	exonic	Ppfia1	nonsynonymous SNV	"Ppfia1:NM_001033319:exon25:c.T3143G:p.V1048G,Ppfia1:NM_001195086:exon26:c.T3218G:p.V1073G"	7qF5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr7	145254637	DC1638tail	autochthonous	sgMsh2	145254637	A	G	SNV	Mutect2;Vardict	2	0.048	93	33	2	0.060606061	exonic	Tpcn2	synonymous SNV	Tpcn2:NM_146206:exon25:c.T2179C:p.L727L	7qF5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
DC1638T5	chr8	3687933	DC1638tail	autochthonous	sgMsh2	3687933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	213	9	0	0	exonic	Fcer2a	nonsynonymous SNV	"Fcer2a:NM_001253745:exon7:c.A459G:p.I153M,Fcer2a:NM_001253746:exon7:c.A459G:p.I153M,Fcer2a:NM_001253737:exon8:c.A522G:p.I174M,Fcer2a:NM_001253739:exon8:c.A522G:p.I174M,Fcer2a:NM_001253747:exon8:c.A405G:p.I135M,Fcer2a:NM_001253743:exon9:c.A444G:p.I148M,Fcer2a:NM_013517:exon9:c.A525G:p.I175M"	8qA1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.442177565	2	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	4523507	DC1638tail	autochthonous	sgMsh2	4523507	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.096	117	14	0	0	exonic	Cers4	frameshift deletion	Cers4:NM_026058:exon10:c.1002delT:p.Q335Rfs*1	8qA1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.461402676	NA	NA	GTC	frameshift	NA	NA	NA	-1
DC1638T5	chr8	11437692	DC1638tail	autochthonous	sgMsh2	11437692	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	103	361	14	0.038781163	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon33:c.G2993T:p.G998V	8qA1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.302795506	3	0.7984609	GGG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	14727402	DC1638tail	autochthonous	sgMsh2	14727402	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	111	0	0	NA	exonic	Dlgap2	nonsynonymous SNV	"Dlgap2:NM_001145965:exon5:c.T646C:p.Y216H,Dlgap2:NM_172910:exon6:c.T643C:p.Y215H"	8qA1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.653653792	2	0.9462191	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	27407022	DC1638tail	autochthonous	sgMsh2	27407022	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	212	0	0	NA	exonic	Chrna6	nonsynonymous SNV	Chrna6:NM_021369:exon5:c.A826G:p.I276V	8qA2	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	33572525	DC1638tail	autochthonous	sgMsh2	33572525	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	235	0	0	NA	exonic	Tex15	nonsynonymous SNV	Tex15:NM_031374:exon1:c.A1982T:p.N661I	8qA3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	1.96E-09	AAC	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr8	33582205	DC1638tail	autochthonous	sgMsh2	33582205	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	180	1	0	0	exonic	Tex15	synonymous SNV	Tex15:NM_031374:exon3:c.A7779G:p.P2593P	8qA3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.576753346	2	0.9999729	CAT	synonymous	NA	NA	NA	NA
DC1638T5	chr8	33671573	DC1638tail	autochthonous	sgMsh2	33671573	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	160	651	10	0.015360983	exonic	Gsr	nonsynonymous SNV	Gsr:NM_010344:exon4:c.A407C:p.Y136S	8qA3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.999997	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	43520060	DC1638tail	autochthonous	sgMsh2	43520060	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	527	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A1904G:p.N635S	8qA4	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.110544391	3	1	GTT	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr8	45942140	DC1638tail	autochthonous	sgMsh2	45942140	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	110	0	0	NA	exonic	Ccdc110	nonsynonymous SNV	Ccdc110:NM_001033246:exon6:c.A1067G:p.Y356C	8qB1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.9269252	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	46534466	DC1638tail	autochthonous	sgMsh2	46534466	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	125	47	1	0.021276596	exonic	Acsl1	nonsynonymous SNV	"Acsl1:NM_001302163:exon21:c.A2086G:p.T696A,Acsl1:NM_007981:exon21:c.A2086G:p.T696A"	8qB1.1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.365277119	2	0.9278125	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	69073697	DC1638tail	autochthonous	sgMsh2	69073697	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	120	5	0	0	exonic	Slc18a1	nonsynonymous SNV	Slc18a1:NM_153054:exon4:c.A338T:p.E113V	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.168219726	3	0.9999538	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	70518384	DC1638tail	autochthonous	sgMsh2	70518384	T	C	SNV	Mutect2;Vardict	2	0.148	27	109	34	0.311926606	exonic	Kxd1	nonsynonymous SNV	Kxd1:NM_029366:exon3:c.A235G:p.S79G	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	2	0.7458549	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	70519970	DC1638tail	autochthonous	sgMsh2	70519970	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	122	88	3	0.034090909	exonic	Kxd1	nonsynonymous SNV	Kxd1:NM_029366:exon2:c.A68G:p.D23G	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	0.9566333	ATC	nonsynonymous	CAT	8	CATCATCA	NA
DC1638T5	chr8	71482355	DC1638tail	autochthonous	sgMsh2	71482355	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	112	47	0	0	exonic	Ano8	nonsynonymous SNV	Ano8:NM_001164679:exon10:c.T1202C:p.V401A	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.360470841	2	0.87485	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	71663213	DC1638tail	autochthonous	sgMsh2	71663213	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	30	14	1	0.071428571	exonic	Unc13a	nonsynonymous SNV	Unc13a:NM_001029873:exon5:c.A344C:p.D115A	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	2	0.09751338	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	71678692	DC1638tail	autochthonous	sgMsh2	71678692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	170	25	1	0.04	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon3:c.A200G:p.Y67C,Jak3:NM_010589:exon3:c.A200G:p.Y67C"	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	2	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	72488129	DC1638tail	autochthonous	sgMsh2	72488129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	71	52	8	0.153846154	exonic	Slc35e1	nonsynonymous SNV	Slc35e1:NM_177766:exon4:c.A748G:p.S250G	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.749779349	1	0.7259967	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	72496192	DC1638tail	autochthonous	sgMsh2	72496192	T	A	SNV	Mutect2;Vardict	2	0.049	92	17	0	0	exonic	Med26	synonymous SNV	Med26:NM_027485:exon3:c.A1062T:p.P354P	8qB3.3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9894531	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr8	77413608	DC1638tail	autochthonous	sgMsh2	77413608	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	152	53	8	0.150943396	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon8:c.G722C:p.G241A,Arhgap10:NM_001363418:exon8:c.G722C:p.G241A,Arhgap10:NM_001363419:exon8:c.G413C:p.G138A,Arhgap10:NM_001363420:exon8:c.G413C:p.G138A,Arhgap10:NM_001363421:exon8:c.G413C:p.G138A,Arhgap10:NM_030113:exon8:c.G722C:p.G241A"	8qC1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.629622402	2	0.9942786	TCC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	84923799	DC1638tail	autochthonous	sgMsh2	84923799	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	143	6	0	0	exonic	Mast1	nonsynonymous SNV	Mast1:NM_019945:exon12:c.T1304A:p.F435Y	8qC3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.187444837	3	0.9999677	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	91008792	DC1638tail	autochthonous	sgMsh2	91008792	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	212	10	0	0	exonic	Chd9	stopgain	"Chd9:NM_001310530:exon19:c.A4279T:p.K1427X,Chd9:NM_177224:exon21:c.A4279T:p.K1427X"	8qC4	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.81E-09	TAA	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr8	93108479	DC1638tail	autochthonous	sgMsh2	93108479	T	C	SNV	Mutect2;Vardict	2	0.036	367	0	0	NA	exonic	Ces1c	nonsynonymous SNV	Ces1c:NM_007954:exon8:c.A1001G:p.Y334C	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	94052143	DC1638tail	autochthonous	sgMsh2	94052143	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	279	12	0	0	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon4:c.T416C:p.I139T,Ogfod1:NM_177767:exon4:c.T416C:p.I139T"	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.00E-09	ATT	nonsynonymous	AACC	9	AACCAACCA	NA
DC1638T5	chr8	94358479	DC1638tail	autochthonous	sgMsh2	94358479	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	142	0	0	NA	exonic	Slc12a3	nonsynonymous SNV	"Slc12a3:NM_001205311:exon24:c.T2823A:p.S941R,Slc12a3:NM_019415:exon24:c.T2820A:p.S940R"	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9998988	GTG	nonsynonymous	TGAG	8	TGAGTGAG	NA
DC1638T5	chr8	94810481	DC1638tail	autochthonous	sgMsh2	94810481	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	97	63	0	0	exonic	Ccl17	nonsynonymous SNV	Ccl17:NM_011332:exon1:c.T10G:p.F4V	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.600784735	2	0.9946647	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	94811297	DC1638tail	autochthonous	sgMsh2	94811297	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	82	105	0	0	exonic	Ccl17	nonsynonymous SNV	Ccl17:NM_011332:exon2:c.C212A:p.A71D	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.624816124	2	0.9755576	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	95062220	DC1638tail	autochthonous	sgMsh2	95062220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	75	0	0	NA	exonic	Drc7	nonsynonymous SNV	Drc7:NM_001042715:exon7:c.T905C:p.V302A	8qC5	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.495046622	2	0.9981039	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	105388513	DC1638tail	autochthonous	sgMsh2	105388513	A	T	SNV	Mutect2;Strelka2	2	0.043	201	0	0	NA	exonic	Kctd19	nonsynonymous SNV	"Kctd19:NM_001301173:exon9:c.T1346A:p.I449N,Kctd19:NM_177791:exon10:c.T1415A:p.I472N"	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.9999953	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	105388515	DC1638tail	autochthonous	sgMsh2	105388515	G	T	SNV	Mutect2;Strelka2	2	0.046	197	0	0	NA	exonic	Kctd19	nonsynonymous SNV	"Kctd19:NM_001301173:exon9:c.C1344A:p.H448Q,Kctd19:NM_177791:exon10:c.C1413A:p.H471Q"	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.221088782	3	0.9999737	TGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	105472841	DC1638tail	autochthonous	sgMsh2	105472841	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.139	40	21	2	0.095238095	exonic	Zdhhc1	nonsynonymous SNV	"Zdhhc1:NM_001379011:exon12:c.T1121G:p.I374S,Zdhhc1:NM_001379006:exon13:c.T1215G:p.D405E,Zdhhc1:NM_001379007:exon13:c.T1215G:p.D405E,Zdhhc1:NM_001379008:exon13:c.T1200G:p.D400E,Zdhhc1:NM_001379009:exon13:c.T1121G:p.I374S,Zdhhc1:NM_001379010:exon13:c.T1121G:p.I374S,Zdhhc1:NM_001357252:exon14:c.T1200G:p.D400E,Zdhhc1:NM_175160:exon14:c.T1215G:p.D405E"	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.668072625	2	0.000969149	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	105973625	DC1638tail	autochthonous	sgMsh2	105973625	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	115	0	0	NA	exonic	Dpep3	nonsynonymous SNV	Dpep3:NM_027960:exon10:c.T1448G:p.L483R	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.620009846	2	0.9920176	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	106134896	DC1638tail	autochthonous	sgMsh2	106134896	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	44	26	0	0	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon3:c.G368A:p.G123E	8qD3	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.841098629	1	0.8806025	CCC	nonsynonymous	C	5	CCCCC	NA
DC1638T5	chr8	117032721	DC1638tail	autochthonous	sgMsh2	117032721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	111	1	0	0	exonic	Pkd1l2	nonsynonymous SNV	Pkd1l2:NM_029686:exon27:c.T4516G:p.F1506V	8qE1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.456596399	2	0.9994581	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	123408206	DC1638tail	autochthonous	sgMsh2	123408206	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	110	0	0	NA	exonic	Mc1r	nonsynonymous SNV	Mc1r:NM_008559:exon1:c.T697C:p.F233L	8qE1	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9995956	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr8	124030853	DC1638tail	autochthonous	sgMsh2	124030853	C	T	SNV	Mutect2;Vardict	2	0.033	125	19	0	0	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon4:c.C3298T:p.L1100L,Urb2:NM_001368414:exon4:c.C3298T:p.L1100L"	8qE2	chr8-3436940-126969919	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	0.9999834	CCT	synonymous	NA	NA	NA	NA
DC1638T5	chr9	5336070	DC1638tail	autochthonous	sgMsh2	5336070	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	179	76	1	0.013157895	exonic	Casp4	stopgain	"Casp4:NM_001379321:exon6:c.T573G:p.Y191X,Casp4:NM_001379319:exon7:c.T747G:p.Y249X,Casp4:NM_001379322:exon7:c.T744G:p.Y248X,Casp4:NM_001379318:exon8:c.T930G:p.Y310X,Casp4:NM_001379320:exon8:c.T1095G:p.Y365X,Casp4:NM_001379323:exon8:c.T858G:p.Y286X,Casp4:NM_007609:exon8:c.T1098G:p.Y366X"	9qA1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.31721434	3	0.6469489	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	7834134	DC1638tail	autochthonous	sgMsh2	7834134	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	206	68	12	0.176470588	exonic	Birc2	synonymous SNV	"Birc2:NM_001291503:exon2:c.T345A:p.T115T,Birc2:NM_007465:exon2:c.T345A:p.T115T"	9qA1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.855517463	1	0.9999999	GAG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	14795809	DC1638tail	autochthonous	sgMsh2	14795809	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	284	71	1	0.014084507	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon5:c.T353C:p.I118T,Mre11a:NM_018736:exon5:c.T353C:p.I118T"	9qA2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	5.39E-09	ATT	nonsynonymous	TTCCA	10	TTCCATTCCA	NA
DC1638T5	chr9	21006913	DC1638tail	autochthonous	sgMsh2	21006913	T	C	SNV	Mutect2;Vardict	2	0.058	95	98	13	0.132653061	exonic	Mrpl4	synonymous SNV	Mrpl4:NM_023167:exon5:c.T414C:p.H138H	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.278764117	3	0.9250828	ATG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	21206324	DC1638tail	autochthonous	sgMsh2	21206324	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	87	14	6	0.428571429	exonic	Pde4a	synonymous SNV	"Pde4a:NM_019798:exon9:c.T1179G:p.S393S,Pde4a:NM_001310750:exon14:c.T1710G:p.S570S,Pde4a:NM_183408:exon14:c.T1881G:p.S627S"	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9999953	CTC	synonymous	NA	NA	NA	NA
DC1638T5	chr9	21399964	DC1638tail	autochthonous	sgMsh2	21399964	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	291	90	12	0.133333333	exonic	Ilf3	synonymous SNV	"Ilf3:NM_001042707:exon17:c.T2013A:p.A671A,Ilf3:NM_001042709:exon17:c.T2013A:p.A671A,Ilf3:NM_001042708:exon18:c.T2052A:p.A684A,Ilf3:NM_001277321:exon18:c.T2052A:p.A684A,Ilf3:NM_010561:exon18:c.T2052A:p.A684A,Ilf3:NM_001277322:exon19:c.T2052A:p.A684A"	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.591172179	2	0.9999992	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	21526265	DC1638tail	autochthonous	sgMsh2	21526265	A	G	SNV	Mutect2;Vardict	2	0.064	94	1	0	0	exonic	AB124611	nonsynonymous SNV	"AB124611:NM_001198794:exon1:c.A1G:p.M1V,AB124611:NM_206536:exon1:c.A1G:p.M1V"	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.7446866	CAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	21642748	DC1638tail	autochthonous	sgMsh2	21642748	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	290	139	4	0.028776978	exonic	Smarca4	synonymous SNV	"Smarca4:NM_001174078:exon11:c.T1809A:p.G603G,Smarca4:NM_001174079:exon11:c.T1809A:p.G603G,Smarca4:NM_001357764:exon11:c.T1809A:p.G603G,Smarca4:NM_011417:exon11:c.T1809A:p.G603G"	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	1.02E-09	GTG	synonymous	GGTGA	11	GGTGAGGTGAG	NA
DC1638T5	chr9	22107860	DC1638tail	autochthonous	sgMsh2	22107860	T	G	SNV	Mutect2;Vardict	2	0.055	101	5	0	0	exonic	Cnn1	nonsynonymous SNV	Cnn1:NM_009922:exon6:c.T611G:p.I204S	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9676918	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	22108013	DC1638tail	autochthonous	sgMsh2	22108013	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	110	3	0	0	exonic	Cnn1	nonsynonymous SNV	Cnn1:NM_009922:exon7:c.C676T:p.R226W	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	3	0.5794503	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	22197173	DC1638tail	autochthonous	sgMsh2	22197173	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	216	17	0	0	exonic	Zfp872	nonsynonymous SNV	Zfp872:NM_001033813:exon2:c.T110C:p.V37A	9qA3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	38464856	DC1638tail	autochthonous	sgMsh2	38464856	A	-	Deletion	Mutect2;Vardict	2	0.031	202	0	0	NA	exonic	Olfr904	frameshift deletion	Olfr904:NM_146801:exon1:c.814delA:p.T273Pfs*11	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr9	39184576	DC1638tail	autochthonous	sgMsh2	39184576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	397	0	0	NA	exonic	Olfr943	synonymous SNV	Olfr943:NM_146326:exon3:c.T397C:p.L133L	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.370083397	2	0.9999691	CTT	synonymous	NA	NA	NA	NA
DC1638T5	chr9	39426718	DC1638tail	autochthonous	sgMsh2	39426718	T	A	SNV	Mutect2;Vardict	2	0.026	375	0	0	NA	exonic	Olfr952	nonsynonymous SNV	Olfr952:NM_146503:exon1:c.A352T:p.M118L	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.124963225	3	1	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	39839436	DC1638tail	autochthonous	sgMsh2	39839436	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	160	0	0	NA	exonic	Olfr971	nonsynonymous SNV	Olfr971:NM_146614:exon1:c.A1G:p.M1V	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.192251115	3	0.9999849	AAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	43008022	DC1638tail	autochthonous	sgMsh2	43008022	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	101	49	1	0.020408163	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon13:c.T1086C:p.H362H,Arhgef12:NM_027144:exon13:c.T1089C:p.H363H"	9qA5.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.398921064	2	0.9766667	CAT	synonymous	TGCTCA	12	TGCTCATGCTCA	NA
DC1638T5	chr9	44802819	DC1638tail	autochthonous	sgMsh2	44802819	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	38	1	0.026315789	exonic	Ttc36	nonsynonymous SNV	Ttc36:NM_138951:exon1:c.A1T:p.M1L	9qA5.2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9999953	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	45869461	DC1638tail	autochthonous	sgMsh2	45869461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	407	79	3	0.037974684	exonic	Rnf214	nonsynonymous SNV	"Rnf214:NM_001310839:exon9:c.A764G:p.N255S,Rnf214:NM_001310840:exon9:c.A764G:p.N255S,Rnf214:NM_001361112:exon9:c.A1229G:p.N410S,Rnf214:NM_001361113:exon9:c.A1064G:p.N355S,Rnf214:NM_001361114:exon9:c.A764G:p.N255S,Rnf214:NM_178709:exon9:c.A1229G:p.N410S"	9qA5.2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	2	0.5976652	ATT	nonsynonymous	T	5	TTTTT	NA
DC1638T5	chr9	50621152	DC1638tail	autochthonous	sgMsh2	50621152	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	212	31	9	0.290322581	exonic	Pih1d2	nonsynonymous SNV	Pih1d2:NM_028300:exon4:c.A509C:p.K170T	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.480627788	2	2.43E-08	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	50801960	DC1638tail	autochthonous	sgMsh2	50801960	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	186	1	0	0	exonic	Alg9	stopgain	Alg9:NM_133981:exon10:c.T1041G:p.Y347X	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9920707	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	53372875	DC1638tail	autochthonous	sgMsh2	53372875	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	224	4	1	0.25	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.T1255A:p.Y419N	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.15860717	3	5.33E-09	TTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	53374127	DC1638tail	autochthonous	sgMsh2	53374127	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	199	0	0	NA	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.T2507G:p.I836S	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	3	0.9978277	ATT	nonsynonymous	A	5	AAAAA	NA
DC1638T5	chr9	53484089	DC1638tail	autochthonous	sgMsh2	53484089	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	156	19	0	0	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon34:c.A5179G:p.T1727A	9qA5.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9999567	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	55486780	DC1638tail	autochthonous	sgMsh2	55486780	T	A	SNV	Mutect2;MuSe;Vardict	3	0.064	336	311	23	0.073954984	exonic	Etfa	nonsynonymous SNV	Etfa:NM_145615:exon7:c.A586T:p.I196L	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.307601784	3	0.9103768	ATT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	56259395	DC1638tail	autochthonous	sgMsh2	56259395	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	190	46	2	0.043478261	exonic	Peak1	synonymous SNV	Peak1:NM_172924:exon4:c.T1248A:p.A416A	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.24992645	3	0.9993363	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	56260281	DC1638tail	autochthonous	sgMsh2	56260281	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	229	51	1	0.019607843	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.A362C:p.E121A	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.139382059	3	1.28E-09	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	56885432	DC1638tail	autochthonous	sgMsh2	56885432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	28	0	0	NA	exonic	Cspg4	synonymous SNV	Cspg4:NM_139001:exon3:c.C450T:p.G150G	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	1	1	0.9480432	GCT	synonymous	NA	NA	NA	NA
DC1638T5	chr9	57627490	DC1638tail	autochthonous	sgMsh2	57627490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	69	164	25	0.152439024	exonic	Csk	nonsynonymous SNV	"Csk:NM_007783:exon13:c.T1184C:p.V395A,Csk:NM_001304761:exon15:c.T1184C:p.V395A"	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.696910293	2	0.7098518	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	57700644	DC1638tail	autochthonous	sgMsh2	57700644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	207	0	0	NA	exonic	Cyp1a1	nonsynonymous SNV	"Cyp1a1:NM_001136059:exon2:c.T554C:p.V185A,Cyp1a1:NM_009992:exon2:c.T554C:p.V185A"	9qB	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.562334512	2	0.9999984	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	66834585	DC1638tail	autochthonous	sgMsh2	66834585	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.148	93	8	0	0	exonic	Aph1c	nonsynonymous SNV	Aph1c:NM_026674:exon1:c.T14C:p.V5A	9qC	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	2	5.03E-09	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	66834587	DC1638tail	autochthonous	sgMsh2	66834587	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.148	93	8	0	0	exonic	Aph1c	synonymous SNV	Aph1c:NM_026674:exon1:c.T12C:p.P4P	9qC	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.711329126	2	5.03E-09	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	69415522	DC1638tail	autochthonous	sgMsh2	69415522	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	124	3	0	0	exonic	Ice2	nonsynonymous SNV	Ice2:NM_145618:exon10:c.T1298G:p.I433R	9qC	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.201863671	3	0.9996986	ATA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	70543041	DC1638tail	autochthonous	sgMsh2	70543041	T	G	SNV	Mutect2;Vardict	2	0.056	80	57	1	0.01754386	exonic	Sltm	nonsynonymous SNV	"Sltm:NM_001357911:exon1:c.T122G:p.I41S,Sltm:NM_025690:exon1:c.T122G:p.I41S,Sltm:NM_026337:exon1:c.T122G:p.I41S"	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.269151561	3	0.9316769	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	72617535	DC1638tail	autochthonous	sgMsh2	72617535	A	G	SNV	Mutect2;Vardict	2	0.03	178	38	1	0.026315789	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A2006G:p.Q669R	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.144188336	3	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	72671234	DC1638tail	autochthonous	sgMsh2	72671234	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	333	404	20	0.04950495	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_010890:exon3:c.A227T:p.D76V	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	2	0.5541081	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	72907846	DC1638tail	autochthonous	sgMsh2	72907846	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	182	0	0	NA	exonic	Prtg	nonsynonymous SNV	Prtg:NM_175485:exon18:c.A3055G:p.S1019G	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.235507616	3	0.9997776	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	74863200	DC1638tail	autochthonous	sgMsh2	74863200	A	G	SNV	Mutect2;Vardict	2	0.059	92	2	0	0	exonic	Onecut1	nonsynonymous SNV	Onecut1:NM_008262:exon1:c.A904G:p.T302A	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.09792046	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	75390221	DC1638tail	autochthonous	sgMsh2	75390221	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	185	774	83	0.107235142	exonic	Mapk6	nonsynonymous SNV	"Mapk6:NM_015806:exon5:c.T1013C:p.V338A,Mapk6:NM_027418:exon5:c.T1013C:p.V338A"	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.273957839	3	0.9918892	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	76492932	DC1638tail	autochthonous	sgMsh2	76492932	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	198	7	0	0	exonic	Fam83b	synonymous SNV	Fam83b:NM_001045518:exon5:c.A888G:p.P296P	9qD	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.153800892	3	2.40E-08	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	78155424	DC1638tail	autochthonous	sgMsh2	78155424	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	91	109	7	0.064220183	exonic	Cilk1	nonsynonymous SNV	"Cilk1:NM_001163780:exon8:c.A739C:p.K247Q,Cilk1:NM_019987:exon8:c.A739C:p.K247Q"	9qE1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.09950128	AAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	87227191	DC1638tail	autochthonous	sgMsh2	87227191	T	C	SNV	Mutect2;Vardict	2	0.037	172	17	0	0	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon12:c.A1358G:p.N453S	9qE3.1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.177832282	3	0.9999981	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	95871665	DC1638tail	autochthonous	sgMsh2	95871665	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	235	10	0	0	exonic	Atr	synonymous SNV	Atr:NM_019864:exon10:c.T2319C:p.N773N	9qE3.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.115350669	3	1.01E-09	ATA	synonymous	A	5	AAAAA	NA
DC1638T5	chr9	95937634	DC1638tail	autochthonous	sgMsh2	95937634	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	254	39	0	0	exonic	Atr	synonymous SNV	Atr:NM_019864:exon39:c.T6673C:p.L2225L	9qE3.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	3.43E-09	ATT	synonymous	NA	NA	NA	NA
DC1638T5	chr9	95985233	DC1638tail	autochthonous	sgMsh2	95985233	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	246	19	0	0	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon15:c.A1643G:p.D548G,Xrn1:NM_011916:exon15:c.A1643G:p.D548G"	9qE3.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.134575781	3	1.03E-09	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	96686698	DC1638tail	autochthonous	sgMsh2	96686698	T	C	SNV	Mutect2;Vardict	2	0.02	371	72	3	0.041666667	exonic	Zbtb38	nonsynonymous SNV	"Zbtb38:NM_001359959:exon3:c.A2332G:p.T778A,Zbtb38:NM_001359960:exon3:c.A2332G:p.T778A,Zbtb38:NM_175537:exon3:c.A2332G:p.T778A"	9qE3.3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.096125558	3	1	GTT	nonsynonymous	TTTTCT	12	TTTTCTTTTTCT	NA
DC1638T5	chr9	106033788	DC1638tail	autochthonous	sgMsh2	106033788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	123	9	0	0	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon21:c.T4714G:p.S1572A	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.403727342	2	0.9932104	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	106662384	DC1638tail	autochthonous	sgMsh2	106662384	T	C	SNV	Mutect2;Vardict	2	0.078	66	207	28	0.1352657	exonic	Tex264	nonsynonymous SNV	"Tex264:NM_001081654:exon5:c.A625G:p.T209A,Tex264:NM_001286498:exon5:c.A625G:p.T209A,Tex264:NM_011573:exon5:c.A625G:p.T209A"	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.374889675	2	9.00E-06	GTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	107577926	DC1638tail	autochthonous	sgMsh2	107577926	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	154	6	0	0	exonic	Hyal1	nonsynonymous SNV	"Hyal1:NM_001331161:exon2:c.T395G:p.M132R,Hyal1:NM_008317:exon2:c.T395G:p.M132R"	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.230701338	3	0.9994975	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	107590956	DC1638tail	autochthonous	sgMsh2	107590956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	116	30	6	0.2	exonic	Ifrd2	nonsynonymous SNV	Ifrd2:NM_025903:exon7:c.T622G:p.L208V	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.576753346	2	0.999341	CTT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	107901289	DC1638tail	autochthonous	sgMsh2	107901289	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	56	28	0	0	exonic	Mon1a	synonymous SNV	Mon1a:NM_028369:exon4:c.A711G:p.L237L	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.533496845	2	0.9929385	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chr9	107908074	DC1638tail	autochthonous	sgMsh2	107908074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	74	5	2	0.4	exonic	Mst1r	synonymous SNV	Mst1r:NM_009074:exon1:c.T930A:p.R310R	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.547915678	2	0.9979033	GTG	synonymous	NA	NA	NA	NA
DC1638T5	chr9	107930188	DC1638tail	autochthonous	sgMsh2	107930188	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	182	0	0	NA	exonic	Actl11	nonsynonymous SNV	Actl11:NM_026338:exon1:c.A1709C:p.E570A	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.432565009	2	0.99997	GAA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	107968714	DC1638tail	autochthonous	sgMsh2	107968714	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	96	32	0	0	exonic	Traip	synonymous SNV	Traip:NM_011634:exon11:c.T1005C:p.H335H	9qF1	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.283570395	3	0.0918191	ATT	synonymous	NA	NA	NA	NA
DC1638T5	chr9	108494820	DC1638tail	autochthonous	sgMsh2	108494820	T	A	SNV	Mutect2;Vardict	2	0.036	153	141	2	0.014184397	exonic	Usp19	nonsynonymous SNV	"Usp19:NM_145407:exon9:c.T1109A:p.I370N,Usp19:NM_001168371:exon10:c.T1184A:p.I395N,Usp19:NM_001168372:exon10:c.T1181A:p.I394N,Usp19:NM_001168373:exon10:c.T1184A:p.I395N,Usp19:NM_027804:exon10:c.T1181A:p.I394N"	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.173026004	3	0.9999949	ATT	nonsynonymous	TTGA	8	TTGATTGA	NA
DC1638T5	chr9	108514592	DC1638tail	autochthonous	sgMsh2	108514592	T	C	SNV	Mutect2;Vardict	2	0.031	212	443	6	0.013544018	exonic	Qars	nonsynonymous SNV	Qars:NM_133794:exon20:c.T1913C:p.L638P	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.148994614	3	5.04E-09	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	108733182	DC1638tail	autochthonous	sgMsh2	108733182	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	171	107	0	0	exonic	Prkar2a	frameshift deletion	Prkar2a:NM_008924:exon6:c.609delT:p.F204Lfs*3	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.961255576	NA	NA	GTT	frameshift	NA	NA	NA	-1
DC1638T5	chr9	109103265	DC1638tail	autochthonous	sgMsh2	109103265	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	65	22	3	0.136363636	exonic	Plxnb1	nonsynonymous SNV	Plxnb1:NM_172775:exon7:c.T1571C:p.L524P	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.40853362	2	0.9256631	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	110087561	DC1638tail	autochthonous	sgMsh2	110087561	A	-	Deletion	Mutect2;Vardict	2	0.055	96	68	1	0.014705882	exonic	Dhx30	frameshift deletion	"Dhx30:NM_001252683:exon8:c.1885delT:p.S629Pfs*55,Dhx30:NM_133347:exon11:c.1867delT:p.S623Pfs*55,Dhx30:NM_001252682:exon12:c.1798delT:p.S600Pfs*55"	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.264345283	NA	NA	GAA	frameshift	NA	NA	NA	-1
DC1638T5	chr9	110599209	DC1638tail	autochthonous	sgMsh2	110599209	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	198	80	9	0.1125	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon16:c.G6973A:p.V2325M	9qF2	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.403727342	2	0.9997713	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	113944917	DC1638tail	autochthonous	sgMsh2	113944917	C	-	Deletion	Mutect2;Vardict	2	0.067	143	56	1	0.017857143	exonic	Ubp1	frameshift deletion	"Ubp1:NM_001372510:exon2:c.183delC:p.F64Sfs*3,Ubp1:NM_001372511:exon2:c.183delC:p.F64Sfs*3,Ubp1:NM_001083319:exon3:c.183delC:p.F64Sfs*3,Ubp1:NM_001372507:exon3:c.183delC:p.F64Sfs*3,Ubp1:NM_001372508:exon3:c.183delC:p.F64Sfs*3,Ubp1:NM_001372512:exon3:c.183delC:p.F64Sfs*3,Ubp1:NM_001372514:exon3:c.183delC:p.F64Sfs*3,Ubp1:NM_013699:exon3:c.183delC:p.F64Sfs*3"	9qF3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.322020618	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1638T5	chr9	119609176	DC1638tail	autochthonous	sgMsh2	119609176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	164	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon28:c.A5626G:p.N1876D,Scn10a:NM_009134:exon28:c.A5623G:p.N1875D"	9qF3	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	2	1	1	1.02E-09	TTG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chr9	123977366	DC1638tail	autochthonous	sgMsh2	123977366	A	T	SNV	Mutect2;Vardict	2	0.043	124	0	0	NA	exonic	Ccr1l1	nonsynonymous SNV	Ccr1l1:NM_007718:exon2:c.T1043A:p.V348E	9qF4	chr9-3342997-124108155	4	2	2	0.82	3.941147861	POOR GOF (79.6%)	1	0.206669949	3	0.999588	CAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	13113652	DC1638tail	autochthonous	sgMsh2	13113652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	273	65	4	0.061538462	exonic	Usp9x	synonymous SNV	Usp9x:NM_009481:exon12:c.A1512G:p.A504A	XqA1.1	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
DC1638T5	chrX	17281614	DC1638tail	autochthonous	sgMsh2	17281614	A	C	SNV	Mutect2;Vardict	2	0.035	158	0	0	NA	exonic	Efhc2	nonsynonymous SNV	Efhc2:NM_028916:exon3:c.T95G:p.V32G	XqA1.2	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	36068399	DC1638tail	autochthonous	sgMsh2	36068399	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.084	135	28	0	0	exonic	Dock11	frameshift deletion	Dock11:NM_001009947:exon51:c.5932delA:p.V1980fs*0	XqA3.3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1638T5	chrX	48183071	DC1638tail	autochthonous	sgMsh2	48183072	GA	-	Deletion	Strelka2;Vardict	2	0.0886	79	132	2	0.015151515	exonic	Zdhhc9	frameshift deletion	Zdhhc9:NM_172465:exon5:c.574_575del:p.S192Pfs*9	XqA5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GGA	frameshift	GGAG	8	GGAGGGAG	-2
DC1638T5	chrX	48566786	DC1638tail	autochthonous	sgMsh2	48566786	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	223	17	0	0	exonic	Zfp280c	synonymous SNV	"Zfp280c:NM_001166650:exon8:c.T711C:p.P237P,Zfp280c:NM_153532:exon8:c.T711C:p.P237P,Zfp280c:NM_001166648:exon9:c.T711C:p.P237P,Zfp280c:NM_001166649:exon9:c.T684C:p.P228P,Zfp280c:NM_001358792:exon10:c.T642C:p.P214P"	XqA5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
DC1638T5	chrX	73551662	DC1638tail	autochthonous	sgMsh2	73551662	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	161	0	0	NA	exonic	Atp2b3	nonsynonymous SNV	"Atp2b3:NM_001310537:exon18:c.T3048G:p.I1016M,Atp2b3:NM_177236:exon18:c.T3048G:p.I1016M"	XqA7.3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TTC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	74234245	DC1638tail	autochthonous	sgMsh2	74234245	T	C	SNV	Mutect2;Vardict	2	0.037	144	532	0	0	exonic	Flna	nonsynonymous SNV	"Flna:NM_001290421:exon26:c.A2539G:p.T847A,Flna:NM_010227:exon26:c.A4516G:p.T1506A"	XqA7.3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	81420891	DC1638tail	autochthonous	sgMsh2	81420891	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	203	0	0	NA	exonic	4930595M18Rik	synonymous SNV	4930595M18Rik:NM_173435:exon4:c.A1209G:p.S403S	XqB	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
DC1638T5	chrX	89932188	DC1638tail	autochthonous	sgMsh2	89932188	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	413	0	0	NA	exonic	4930415L06Rik	synonymous SNV	4930415L06Rik:NM_001033880:exon2:c.T402C:p.H134H	XqC1	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
DC1638T5	chrX	94079914	DC1638tail	autochthonous	sgMsh2	94079914	A	G	SNV	Mutect2;Vardict	2	0.03	260	30	0	0	exonic	Zfx	nonsynonymous SNV	"Zfx:NM_001358354:exon8:c.T1132C:p.F378L,Zfx:NM_001358355:exon8:c.T1132C:p.F378L,Zfx:NM_011768:exon8:c.T1282C:p.F428L,Zfx:NM_001044386:exon9:c.T1282C:p.F428L,Zfx:NM_001358356:exon9:c.T1282C:p.F428L"	XqC3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	97076051	DC1638tail	autochthonous	sgMsh2	97076051	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	91	0	0	NA	exonic	Pgr15l	stopgain	Pgr15l:NM_001033361:exon2:c.C38A:p.S13X	XqC3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	101732399	DC1638tail	autochthonous	sgMsh2	101732399	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	111	0	0	NA	exonic	Cxcr3	nonsynonymous SNV	Cxcr3:NM_009910:exon2:c.T656C:p.L219P	XqD	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	112632761	DC1638tail	autochthonous	sgMsh2	112632761	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	203	0	0	NA	exonic	Zfp711	synonymous SNV	"Zfp711:NM_001381900:exon8:c.T1488G:p.A496A,Zfp711:NM_001381899:exon9:c.T1488G:p.A496A,Zfp711:NM_177747:exon9:c.T1623G:p.A541A,Zfp711:NM_001381898:exon10:c.T1623G:p.A541A"	XqE1	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CTG	synonymous	GCTG	8	GCTGGCTG	NA
DC1638T5	chrX	152253427	DC1638tail	autochthonous	sgMsh2	152253427	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	262	97	2	0.020618557	exonic	Kdm5c	nonsynonymous SNV	Kdm5c:NM_013668:exon11:c.T1405C:p.Y469H	XqF3	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	157447421	DC1638tail	autochthonous	sgMsh2	157447421	A	G	SNV	Mutect2;Vardict	2	0.053	143	4	0	0	exonic	Sms	nonsynonymous SNV	"Sms:NM_001359185:exon10:c.T893C:p.L298P,Sms:NM_009214:exon10:c.T995C:p.L332P"	XqF4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T5	chrX	160641941	DC1638tail	autochthonous	sgMsh2	160641941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	193	0	0	NA	exonic	Ppef1	synonymous SNV	Ppef1:NM_011147:exon9:c.T831C:p.G277G	XqF4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
DC1638T5	chrX	161875266	DC1638tail	autochthonous	sgMsh2	161875266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	92	0	0	NA	exonic	Nhs	nonsynonymous SNV	"Nhs:NM_001081052:exon2:c.G683A:p.R228K,Nhs:NM_001290526:exon2:c.G683A:p.R228K"	XqF4	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	TCT	nonsynonymous	TCTG	8	TCTGTCTG	NA
DC1638T5	chrX	164394509	DC1638tail	autochthonous	sgMsh2	164394509	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	195	7	0	0	exonic	Vegfd	nonsynonymous SNV	"Vegfd:NM_001308489:exon4:c.A584G:p.K195R,Vegfd:NM_010216:exon4:c.A584G:p.K195R"	XqF5	NA	NA	NA	NA	0.82	3.941147861	POOR GOF (79.6%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr1	13701084	DC1638tail	autochthonous	sgMsh2	13701084	T	-	Deletion	Mutect2;Vardict	2	0.041	170	6	1	0.166666667	exonic	Xkr9	frameshift deletion	Xkr9:NM_001011873:exon4:c.823delT:p.F276Lfs*17	1qA3	chr1-4867294-195062457	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.261479142	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1638T6	chr1	177447351	DC1638tail	autochthonous	sgMsh2	177447351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	174	94	34	0.361702128	exonic	Zbtb18	synonymous SNV	"Zbtb18:NM_013915:exon1:c.C249T:p.Y83Y,Zbtb18:NM_001012330:exon2:c.C276T:p.Y92Y,Zbtb18:NM_001355099:exon2:c.C249T:p.Y83Y,Zbtb18:NM_001355102:exon2:c.C249T:p.Y83Y,Zbtb18:NM_001355103:exon2:c.C276T:p.Y92Y,Zbtb18:NM_001355100:exon3:c.C249T:p.Y83Y,Zbtb18:NM_001355098:exon4:c.C276T:p.Y92Y,Zbtb18:NM_001355101:exon4:c.C249T:p.Y83Y"	1qH4	chr1-4867294-195062457	5	3	2	0.745	4.751267339	RARE KARYOTYPE	2	1	1	2.70E-09	ACG	synonymous	NA	NA	NA	NA
DC1638T6	chr10	60421082	DC1638tail	autochthonous	sgMsh2	60421082	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	151	0	0	NA	exonic	Cdh23	synonymous SNV	Cdh23:NM_001252635:exon21:c.C2247T:p.G749G	10qB4	chr10-3120209-130453386	3	2	1	0.745	4.751267339	RARE KARYOTYPE	2	1	1	2.45E-08	CGC	synonymous	NA	NA	NA	NA
DC1638T6	chr11	69347161	DC1638tail	autochthonous	sgMsh2	69347161	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	124	74	15	0.202702703	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon36:c.G5458A:p.A1820T	11qB3	chr11-3133205-69579350	3	2	1	0.745	4.751267339	RARE KARYOTYPE	1	1	1	0.9999995	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr11	79502025	DC1638tail	autochthonous	sgMsh2	79502025	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	161	0	0	NA	exonic	Omg	nonsynonymous SNV	Omg:NM_019409:exon2:c.G1006A:p.A336T	11qB5	chr11-69590981-121956668	3	3	0	0.745	4.751267339	RARE KARYOTYPE	1	0.293366842	3	0.9991998	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr11	103545853	DC1638tail	autochthonous	sgMsh2	103545853	C	T	SNV	Mutect2;Vardict	2	0.029	188	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon8:c.G2204A:p.C735Y	11qE1	chr11-69590981-121956668	3	3	0	0.745	4.751267339	RARE KARYOTYPE	1	0.184948662	3	1.11E-08	GCA	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr12	32205528	DC1638tail	autochthonous	sgMsh2	32205528	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	170	0	0	NA	exonic	Pik3cg	synonymous SNV	"Pik3cg:NM_001146200:exon2:c.G459A:p.Q153Q,Pik3cg:NM_001146201:exon2:c.G459A:p.Q153Q,Pik3cg:NM_020272:exon2:c.G459A:p.Q153Q"	12qA3	chr12-3252726-119465464	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.516580744	2	0.9999872	GCT	synonymous	NA	NA	NA	NA
DC1638T6	chr12	75400202	DC1638tail	autochthonous	sgMsh2	75400202	-	A	Insertion	Strelka2;Vardict	2	0.2051	78	11	0	0	exonic	Rhoj	frameshift insertion	Rhoj:NM_023275:exon5:c.595dupA:p.K202Efs*37	12qC3	chr12-3252726-119465464	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	NA	NA	AGA	frameshift	A	8	AAAAAAAA	1
DC1638T6	chr12	103732433	DC1638tail	autochthonous	sgMsh2	103732433	G	T	SNV	Mutect2;Vardict	2	0.031	342	0	0	NA	exonic	Serpina1b	synonymous SNV	Serpina1b:NM_009244:exon2:c.C156A:p.A52A	12qE	chr12-3252726-119465464	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.197703742	3	1.00E-09	TGG	synonymous	NA	NA	NA	NA
DC1638T6	chr13	75878839	DC1638tail	autochthonous	sgMsh2	75878839	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	172	1	0	0	exonic	Rhobtb3	synonymous SNV	Rhobtb3:NM_028493:exon9:c.T1414C:p.L472L	13qC1	chr13-3554284-119495179	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.382652403	3	0.5019102	AAG	synonymous	NA	NA	NA	NA
DC1638T6	chr14	54507899	DC1638tail	autochthonous	sgMsh2	54507899	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.094	69	73	4	0.054794521	exonic	Prmt5	stopgain	"Prmt5:NM_001313907:exon16:c.C1492T:p.R498X,Prmt5:NM_001313906:exon17:c.C1753T:p.R585X,Prmt5:NM_013768:exon17:c.C1810T:p.R604X"	14qC2	chr14-3072210-123348696	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.599488765	2	0.9916222	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr15	32640980	DC1638tail	autochthonous	sgMsh2	32640980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	153	3	1	0.333333333	exonic	Sema5a	nonsynonymous SNV	Sema5a:NM_009154:exon16:c.C1939T:p.H647Y	15qB3.1	chr15-3341105-102317306	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.548468445	2	0.9999961	ACA	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr16	59167883	DC1638tail	autochthonous	sgMsh2	59167883	A	-	Deletion	Mutect2;Vardict	2	0.029	373	0	0	NA	exonic	Olfr196	frameshift deletion	Olfr196:NM_146779:exon1:c.259delT:p.S87Pfs*4	16qC1.3	chr16-3871579-96715596	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.184948662	NA	NA	GAA	frameshift	A	5	AAAAA	-1
DC1638T6	chr16	73043100	DC1638tail	autochthonous	sgMsh2	73043100	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	165	2	0	0	exonic	Robo1	synonymous SNV	Robo1:NM_019413:exon28:c.G4737A:p.E1579E	16qC3.1	chr16-3871579-96715596	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.963008548	1	0.9999999	AGC	synonymous	AGCA	9	AGCAAGCAA	NA
DC1638T6	chr17	87718638	DC1638tail	autochthonous	sgMsh2	87718638	-	A	Insertion	Strelka2;Vardict	2	0.6596	47	2	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077483-90701011	5	3	2	0.745	4.751267339	RARE KARYOTYPE	3	1	NA	NA	AGA	frameshift	NA	NA	NA	1
DC1638T6	chr17	87719297	DC1638tail	autochthonous	sgMsh2	87719297	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.081	178	3	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon14:c.2221dupA:p.D742Rfs*6	17qE4	chr17-3077483-90701011	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.516580744	NA	NA	CCA	frameshift	NA	NA	NA	1
DC1638T6	chr18	37682353	DC1638tail	autochthonous	sgMsh2	37682353	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	138	0	0	NA	exonic	Pcdhgb1	synonymous SNV	Pcdhgb1:NM_033574:exon1:c.C1896T:p.V632V	18qB3	chr18-5062409-83064704	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	1	0.9999999	TCG	synonymous	NA	NA	NA	NA
DC1638T6	chr2	76897515	DC1638tail	autochthonous	sgMsh2	76897515	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	169	0	0	NA	exonic	Ttn	stopgain	"Ttn:NM_011652:exon58:c.G14314T:p.E4772X,Ttn:NM_001385708:exon60:c.G17335T:p.E5779X"	2qC3	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.248724062	3	0.9999866	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr2	88987454	DC1638tail	autochthonous	sgMsh2	88987454	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.106	171	0	0	NA	exonic	Olfr1214	frameshift insertion	Olfr1214:NM_146897:exon1:c.746dupT:p.F250Lfs*17	2qE1	chr2-4925576-181511691	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	0.676019246	NA	NA	AGA	frameshift	A	5	AAAAA	1
DC1638T6	chr3	34064983	DC1638tail	autochthonous	sgMsh2	34064983	A	-	Deletion	Strelka2;Vardict	2	0.0714	70	11	0	0	exonic	Fxr1	frameshift deletion	Fxr1:NM_001113188:exon15:c.1700delA:p.K569Nfs*56	3qA3	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.45535636	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
DC1638T6	chr3	96176803	DC1638tail	autochthonous	sgMsh2	96176803	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	58	69	6	0.086956522	exonic	Sf3b4	nonsynonymous SNV	Sf3b4:NM_153053:exon5:c.C1082A:p.P361H	3qF2.1	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.975763628	1	0.9981378	CCC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr3	107330884	DC1638tail	autochthonous	sgMsh2	107330884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	172	16	2	0.125	exonic	Rbm15	nonsynonymous SNV	Rbm15:NM_001045807:exon1:c.C2197T:p.R733W	3qF2.3	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.969386088	1	2.67E-08	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr3	122512361	DC1638tail	autochthonous	sgMsh2	122512361	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.101	75	67	0	0	exonic	Bcar3	frameshift insertion	"Bcar3:NM_001355264:exon5:c.775dupC:p.Q261Pfs*36,Bcar3:NM_013867:exon7:c.1030dupC:p.Q346Pfs*36"	3qG1	chr3-15331914-159911278	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.644131545	NA	NA	TGC	frameshift	C	5	CCCCC	1
DC1638T6	chr5	8814816	DC1638tail	autochthonous	sgMsh2	8814816	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	171	0	0	NA	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon8:c.G793A:p.A265T	5qA1	chr5-3344388-150404797	5	4	1	0.745	4.751267339	RARE KARYOTYPE	1	0.286989302	3	0.9996993	TGC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr6	34872821	DC1638tail	autochthonous	sgMsh2	34872821	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	83	39	7	0.179487179	exonic	Tmem140	nonsynonymous SNV	"Tmem140:NM_197986:exon2:c.C271A:p.L91M,Tmem140:NM_001368365:exon3:c.C271A:p.L91M"	6qB1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	1	1	0.9999447	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr6	35196734	DC1638tail	autochthonous	sgMsh2	35196734	A	-	Deletion	Strelka2;Vardict	2	0.1333	105	7	0	0	exonic	Nup205	frameshift deletion	Nup205:NM_027513:exon10:c.1351delA:p.N453Ifs*8	6qB1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.850126089	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
DC1638T6	chr6	39170803	DC1638tail	autochthonous	sgMsh2	39170803	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	257	31	10	0.322580645	exonic	Kdm7a	nonsynonymous SNV	Kdm7a:NM_001033430:exon5:c.C667A:p.L223I	6qB1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.669641706	2	0.9999707	AGC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr6	42141182	DC1638tail	autochthonous	sgMsh2	42141182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	342	0	0	NA	exonic	Tas2r139	nonsynonymous SNV	Tas2r139:NM_181275:exon1:c.G247A:p.V83I	6qB2.1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	3	1	1	1	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr6	42955889	DC1638tail	autochthonous	sgMsh2	42955889	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.022	548	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.C390A:p.H130Q	6qB2.1	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.140305881	3	1	ACT	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr6	48405344	DC1638tail	autochthonous	sgMsh2	48405344	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	58	16	0	0	exonic	Krba1	nonsynonymous SNV	"Krba1:NM_001362145:exon4:c.G583A:p.G195S,Krba1:NM_001347152:exon5:c.G520A:p.G174S,Krba1:NM_001347153:exon5:c.G412A:p.G138S,Krba1:NM_001362144:exon5:c.G415A:p.G139S,Krba1:NM_133922:exon5:c.G415A:p.G139S"	6qB2.3	chr6-3494310-149014300	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.478315504	2	0.9367111	CGG	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr7	59271998	DC1638tail	autochthonous	sgMsh2	59271998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	148	54	2	0.037037037	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon3:c.T54C:p.T18T,Ube3a:NM_011668:exon5:c.T117C:p.T39T"	7qB5	chr7-4704058-142893198	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.669641706	2	0.997193	CTG	synonymous	NA	NA	NA	NA
DC1638T6	chr7	102477199	DC1638tail	autochthonous	sgMsh2	102477199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	235	0	0	NA	exonic	Olfr543	nonsynonymous SNV	Olfr543:NM_001011782:exon1:c.A670G:p.T224A	7qE3	chr7-4704058-142893198	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.542090904	2	9.64E-09	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr7	103768052	DC1638tail	autochthonous	sgMsh2	103768052	C	T	SNV	Mutect2;Vardict	2	0.046	400	0	0	NA	exonic	Olfr69	nonsynonymous SNV	Olfr69:NM_013621:exon3:c.G344A:p.G115D	7qE3	chr7-4704058-142893198	6	3	3	0.745	4.751267339	RARE KARYOTYPE	1	0.293366842	3	2.32E-08	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr8	70301045	DC1638tail	autochthonous	sgMsh2	70301045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	113	51	12	0.235294118	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon2:c.T173C:p.L58P	8qB3.3	chr8-3748601-126965210	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	1	0.9999982	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T6	chr8	113637844	DC1638tail	autochthonous	sgMsh2	113637844	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	56	15	1	0.066666667	exonic	Mon1b	frameshift deletion	"Mon1b:NM_173015:exon2:c.252delC:p.G87Efs*34,Mon1b:NM_001048143:exon3:c.252delC:p.G87Efs*34"	8qE1	chr8-3748601-126965210	5	3	2	0.745	4.751267339	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1638T6	chr9	54706231	DC1638tail	autochthonous	sgMsh2	54706232	AG	-	Deletion	Strelka2;Vardict	2	0.2	60	15	0	0	exonic	Dnaja4	frameshift deletion	"Dnaja4:NM_021422:exon2:c.301_302del:p.R103Kfs*17,Dnaja4:NM_001357875:exon3:c.388_389del:p.R132Kfs*17"	9qA5.3	chr9-7014108-123664738	3	2	1	0.745	4.751267339	RARE KARYOTYPE	1	1	NA	NA	TAG	frameshift	AG	9	AGAGAGAGA	-2
DC1638T6	chr9	123660578	DC1638tail	autochthonous	sgMsh2	123660578	T	G	SNV	Mutect2;Vardict	2	0.063	204	5	0	0	exonic	Slc6a20a	synonymous SNV	Slc6a20a:NM_139142:exon4:c.A399C:p.T133T	9qF4	chr9-7014108-123664738	3	2	1	0.745	4.751267339	RARE KARYOTYPE	1	0.401785023	2	0.873834	CTG	synonymous	NA	NA	NA	NA
DC1638T6	chrX	7937965	DC1638tail	autochthonous	sgMsh2	7937965	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	71	24	1	0.041666667	exonic	Hdac6	synonymous SNV	"Hdac6:NM_001130416:exon17:c.G1368A:p.E456E,Hdac6:NM_010413:exon17:c.G1368A:p.E456E"	XqA1.1	NA	NA	NA	NA	0.745	4.751267339	RARE KARYOTYPE	NA	NA	NA	NA	CCT	synonymous	TCC	14	TCCTCCTCCTCCTC	NA
DC1638T6	chrX	120400972	DC1638tail	autochthonous	sgMsh2	120400972	A	C	SNV	Mutect2;Vardict	2	0.021	265	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.A2111C:p.D704A,Pcdh11x:NM_001271810:exon3:c.A2111C:p.D704A"	XqE2	NA	NA	NA	NA	0.745	4.751267339	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr1	13148347	DC1638tail	autochthonous	sgMsh2	13148347	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	189	19	2	0.105263158	exonic	Ncoa2	synonymous SNV	"Ncoa2:NM_001302702:exon20:c.G4050A:p.T1350T,Ncoa2:NM_008678:exon21:c.G4257A:p.T1419T"	1qA3	chr1-6770919-195062457	4	2	2	0.776	3.172152134	NA	1	0.380167717	2	1.89E-08	ACG	synonymous	NA	NA	NA	NA
DC1638T7	chr1	153468940	DC1638tail	autochthonous	sgMsh2	153468940	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	256	106	16	0.150943396	exonic	Dhx9	synonymous SNV	Dhx9:NM_007842:exon14:c.A1497G:p.K499K	1qG3	chr1-6770919-195062457	4	2	2	0.776	3.172152134	NA	1	0.371992067	2	1.11E-09	GTT	synonymous	NA	NA	NA	NA
DC1638T7	chr1	191163954	DC1638tail	autochthonous	sgMsh2	191163954	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	131	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.491delC:p.P164Lfs*14	1qH6	chr1-6770919-195062457	4	2	2	0.776	3.172152134	NA	1	0.376079892	NA	NA	AGG	frameshift	G	5	GGGGG	-1
DC1638T7	chr10	12670203	DC1638tail	autochthonous	sgMsh2	12670203	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	118	19	0	0	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon35:c.A4990T:p.I1664F	10qA1	chr10-3120209-130453386	3	2	1	0.776	3.172152134	NA	1	0.192127771	3	0.9368935	ATG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr10	22067286	DC1638tail	autochthonous	sgMsh2	22067286	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	267	0	0	NA	exonic	4930444G20Rik	nonsynonymous SNV	4930444G20Rik:NM_053264:exon1:c.G794A:p.G265D	10qA3	chr10-3120209-130453386	3	2	1	0.776	3.172152134	NA	1	0.445572916	2	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr10	28568358	DC1638tail	autochthonous	sgMsh2	28568358	A	G	SNV	Mutect2;Vardict	2	0.039	179	70	2	0.028571429	exonic	Ptprk	nonsynonymous SNV	"Ptprk:NM_001359356:exon17:c.A2708G:p.D903G,Ptprk:NM_008983:exon18:c.A2744G:p.D915G,Ptprk:NM_001359355:exon20:c.A2786G:p.D929G"	10qA4	chr10-3120209-130453386	3	2	1	0.776	3.172152134	NA	1	0.159425172	3	0.9997546	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr11	57810042	DC1638tail	autochthonous	sgMsh2	57810042	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	107	81	10	0.12345679	exonic	Sap30l	nonsynonymous SNV	Sap30l:NM_001081168:exon4:c.A521C:p.K174T	11qB1.3	chr11-3133205-69579350	2	1	1	0.776	3.172152134	NA	1	0.764423259	1	0.9998155	AAG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr11	75670165	DC1638tail	autochthonous	sgMsh2	75670165	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	99	94	0	0	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon24:c.C2296A:p.R766R,Myo1c:NM_001080775:exon24:c.C2344A:p.R782R,Myo1c:NM_001370611:exon24:c.C2401A:p.R801R,Myo1c:NM_008659:exon24:c.C2296A:p.R766R"	11qB5	chr11-69590981-121956809	2	1	1	0.776	3.172152134	NA	1	0.175776471	3	0.9597987	CCG	synonymous	NA	NA	NA	NA
DC1638T7	chr11	106017448	DC1638tail	autochthonous	sgMsh2	106017448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	96	0	0	NA	exonic	Kcnh6	nonsynonymous SNV	Kcnh6:NM_001037712:exon5:c.T889C:p.C297R	11qE1	chr11-69590981-121956809	2	1	1	0.776	3.172152134	NA	1	1	1	1.40E-08	CTG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr11	106266939	DC1638tail	autochthonous	sgMsh2	106266939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	119	78	15	0.192307692	exonic	Smarcd2	synonymous SNV	"Smarcd2:NM_031878:exon3:c.C378T:p.I126I,Smarcd2:NM_001130187:exon4:c.C519T:p.I173I"	11qE1	chr11-69590981-121956809	2	1	1	0.776	3.172152134	NA	1	0.711281535	1	0.9988167	CGA	synonymous	GCGA	8	GCGAGCGA	NA
DC1638T7	chr11	110030358	DC1638tail	autochthonous	sgMsh2	110030358	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	105	0	0	NA	exonic	Abca8a	synonymous SNV	Abca8a:NM_153145:exon35:c.C4407G:p.A1469A	11qE1	chr11-69590981-121956809	2	1	1	0.776	3.172152134	NA	1	0.576383313	2	0.6909678	GGG	synonymous	NA	NA	NA	NA
DC1638T7	chr12	3591913	DC1638tail	autochthonous	sgMsh2	3591913	G	T	SNV	Mutect2;Vardict	2	0.024	372	56	0	0	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001162465:exon3:c.G75T:p.Q25H,Dtnb:NM_001355528:exon3:c.G75T:p.Q25H,Dtnb:NM_001374710:exon3:c.G75T:p.Q25H,Dtnb:NM_007886:exon3:c.G75T:p.Q25H"	12qA1.1	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.098107798	3	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr12	57576678	DC1638tail	autochthonous	sgMsh2	57576678	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	200	0	0	NA	exonic	Ttc6	nonsynonymous SNV	Ttc6:NM_001312644:exon2:c.G862A:p.A288T	12qC1	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.310674693	2	0.9999612	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr12	98275909	DC1638tail	autochthonous	sgMsh2	98275909	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	275	7	0	0	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.G820A:p.V274I	12qE	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.269796444	2	0.9983167	AGT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr12	101990052	DC1638tail	autochthonous	sgMsh2	101990052	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	268	157	15	0.095541401	exonic	Cpsf2	nonsynonymous SNV	Cpsf2:NM_016856:exon8:c.T1113A:p.N371K	12qE	chr12-3237715-119465464	4	2	2	0.776	3.172152134	NA	1	0.310674693	2	0.9999984	ATC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr13	13669879	DC1638tail	autochthonous	sgMsh2	13669879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	330	12	1	0.083333333	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon19:c.G5653A:p.V1885I	13qA1	chr13-3554284-26769494	3	2	1	0.776	3.172152134	NA	1	0.437397266	2	1.47E-09	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr13	14164340	DC1638tail	autochthonous	sgMsh2	14164340	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	109	68	8	0.117647059	exonic	Arid4b	synonymous SNV	"Arid4b:NM_194262:exon15:c.G1395A:p.K465K,Arid4b:NM_198122:exon15:c.G1395A:p.K465K"	13qA1	chr13-3554284-26769494	3	2	1	0.776	3.172152134	NA	1	0.282059919	2	0.9802735	AGC	synonymous	NA	NA	NA	NA
DC1638T7	chr13	77327893	DC1638tail	autochthonous	sgMsh2	77327893	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.103	179	2	1	0.5	exonic	2210408I21Rik	stopgain	2210408I21Rik:NM_001145676:exon17:c.3320delC:p.S1107fs*0	13qC1	chr13-26769495-119495179	4	2	2	0.776	3.172152134	NA	1	0.421045966	NA	NA	TCA	nonsynonymous	NA	NA	NA	-1
DC1638T7	chr13	111755214	DC1638tail	autochthonous	sgMsh2	111755214	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	250	31	2	0.064516129	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon14:c.C3506A:p.A1169D	13qD2.2	chr13-26769495-119495179	4	2	2	0.776	3.172152134	NA	1	0.384255542	2	1.13E-09	AGC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
DC1638T7	chr14	73205760	DC1638tail	autochthonous	sgMsh2	73205760	T	-	Deletion	Strelka2;Vardict	2	0.0561	107	16	0	0	exonic	Rb1	stopgain	Rb1:NM_009029:exon23:c.2452delA:p.M818fs*0	14qD3	chr14-3072210-123592557	2	1	1	0.776	3.172152134	NA	1	0.229326978	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
DC1638T7	chr14	78935236	DC1638tail	autochthonous	sgMsh2	78935236	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	88	7	2	0.285714286	exonic	Vwa8	nonsynonymous SNV	"Vwa8:NM_027906:exon8:c.C917T:p.T306M,Vwa8:NM_173758:exon8:c.C917T:p.T306M"	14qD3	chr14-3072210-123592557	2	1	1	0.776	3.172152134	NA	1	0.891145831	1	0.9999943	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr14	118161593	DC1638tail	autochthonous	sgMsh2	118161593	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	137	46	3	0.065217391	exonic	Gpr180	nonsynonymous SNV	Gpr180:NM_021434:exon8:c.G1126A:p.A376T	14qE4	chr14-3072210-123592557	2	1	1	0.776	3.172152134	NA	1	0.662227636	1	0.9917904	CGC	nonsynonymous	GCAT	8	GCATGCAT	NA
DC1638T7	chr15	3971492	DC1638tail	autochthonous	sgMsh2	3971492	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	123	418	12	0.028708134	exonic	Fbxo4	nonsynonymous SNV	Fbxo4:NM_134099:exon5:c.G737A:p.R246K	15qA1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.425133791	2	0.9999197	CCT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr15	8203788	DC1638tail	autochthonous	sgMsh2	8203788	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	185	8	1	0.125	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon21:c.C3596T:p.A1199V	15qA1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.269796444	2	0.9897768	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr15	12924087	DC1638tail	autochthonous	sgMsh2	12924087	C	T	SNV	Mutect2;Vardict	2	0.019	345	69	0	0	exonic	Drosha	nonsynonymous SNV	"Drosha:NM_001130149:exon30:c.C3554T:p.T1185M,Drosha:NM_026799:exon30:c.C3554T:p.T1185M"	15qA1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.077668673	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr15	44376526	DC1638tail	autochthonous	sgMsh2	44376526	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	178	94	5	0.053191489	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon10:c.G1614A:p.G538G,Nudcd1:NM_026149:exon10:c.G1617A:p.G539G"	15qB3.2	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.306586869	2	0.9998271	GCC	synonymous	NA	NA	NA	NA
DC1638T7	chr15	79762373	DC1638tail	autochthonous	sgMsh2	79762373	-	CA	Insertion	Strelka2;Vardict	2	0.0882	34	61	0	0	exonic	Dnal4	frameshift insertion	Dnal4:NM_017470:exon4:c.305_306insTG:p.W102Cfs*47	15qE1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.360546157	NA	NA	TCC	frameshift	CA	11	CACACACACAC	2
DC1638T7	chr15	80534663	DC1638tail	autochthonous	sgMsh2	80534663	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	120	0	0	NA	exonic	Enthd1	nonsynonymous SNV	Enthd1:NM_001163189:exon2:c.C434T:p.T145M	15qE1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.282059919	2	0.9854364	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr15	82790323	DC1638tail	autochthonous	sgMsh2	82790323	G	A	SNV	Mutect2;MuSe;Vardict	3	0.064	285	0	0	NA	exonic	Cyp2d26	nonsynonymous SNV	Cyp2d26:NM_029562:exon9:c.C1357T:p.R453C	15qE1	chr15-3341105-102298133	4	3	1	0.776	3.172152134	NA	1	0.261620795	2	0.9938267	CGG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr16	29321729	DC1638tail	autochthonous	sgMsh2	29321729	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.14	130	0	0	NA	exonic	Atp13a5	synonymous SNV	"Atp13a5:NM_001284375:exon9:c.G873A:p.S291S,Atp13a5:NM_175650:exon10:c.G1008A:p.S336S"	16qB2	chr16-4687471-97453880	3	2	1	0.776	3.172152134	NA	1	0.572295488	2	0.7249507	GCG	synonymous	NA	NA	NA	NA
DC1638T7	chr17	6734518	DC1638tail	autochthonous	sgMsh2	6734518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	60	1	1	1	exonic	Sytl3	nonsynonymous SNV	"Sytl3:NM_183368:exon6:c.G743A:p.R248Q,Sytl3:NM_183370:exon10:c.G773A:p.R258Q,Sytl3:NM_031395:exon13:c.G1358A:p.R453Q"	17qA1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	1	1	0.9999818	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr17	30925645	DC1638tail	autochthonous	sgMsh2	30925645	G	A	SNV	Mutect2;Vardict	2	0.132	32	1	0	0	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon7:c.G791A:p.R264H	17qA3.3	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.539592889	2	0.8312409	CGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr17	33848080	DC1638tail	autochthonous	sgMsh2	33848080	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	173	111	8	0.072072072	exonic	Cd320	nonsynonymous SNV	"Cd320:NM_001305169:exon4:c.C500T:p.T167M,Cd320:NM_019421:exon4:c.C542T:p.T181M"	17qB1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.310674693	2	0.9998637	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr17	38082581	DC1638tail	autochthonous	sgMsh2	38082581	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	167	0	0	NA	exonic	Olfr131	synonymous SNV	Olfr131:NM_146867:exon1:c.G396A:p.L132L	17qB1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.429221616	2	0.9999943	GCA	synonymous	NA	NA	NA	NA
DC1638T7	chr17	63896173	DC1638tail	autochthonous	sgMsh2	63896173	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	205	2	0	0	exonic	Fer	nonsynonymous SNV	"Fer:NM_001037997:exon2:c.G97A:p.A33T,Fer:NM_001286415:exon2:c.G97A:p.A33T"	17qE1.1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.155337347	3	0.9999622	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr17	67817016	DC1638tail	autochthonous	sgMsh2	67817016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	199	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon59:c.A8435G:p.Y2812C	17qE1.1	chr17-3077483-90208269	3	2	1	0.776	3.172152134	NA	1	0.371992067	2	4.46E-09	TAC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr18	36765169	DC1638tail	autochthonous	sgMsh2	36765169	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	70	1	0	0	exonic	Dnd1	synonymous SNV	Dnd1:NM_173383:exon3:c.G531A:p.A177A	18qB2	chr18-3325290-80194980	3	2	1	0.776	3.172152134	NA	1	0.331113818	2	0.9933738	GCG	synonymous	NA	NA	NA	NA
DC1638T7	chr18	61299711	DC1638tail	autochthonous	sgMsh2	61299711	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	96	7	0	0	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon11:c.G2819T:p.R940L,Ppargc1b:NM_001364996:exon12:c.G2867T:p.R956L"	18qE1	chr18-3325290-80194980	3	2	1	0.776	3.172152134	NA	1	0.282059919	2	0.9718331	CCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr18	80698177	DC1638tail	autochthonous	sgMsh2	80698177	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.134	93	6	0	0	exonic	Nfatc1	frameshift deletion	"Nfatc1:NM_001164109:exon2:c.607delC:p.Q203Rfs*30,Nfatc1:NM_001164110:exon2:c.607delC:p.Q203Rfs*30,Nfatc1:NM_001164111:exon2:c.565delC:p.Q189Rfs*30,Nfatc1:NM_001164112:exon2:c.565delC:p.Q189Rfs*30,Nfatc1:NM_016791:exon2:c.565delC:p.Q189Rfs*30,Nfatc1:NM_198429:exon2:c.607delC:p.Q203Rfs*30"	18qE3	NA	NA	NA	NA	0.776	3.172152134	NA	NA	NA	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1638T7	chr19	6939623	DC1638tail	autochthonous	sgMsh2	6939623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	47	15	0	0	exonic	Gpr137	nonsynonymous SNV	"Gpr137:NM_001379534:exon2:c.A620G:p.D207G,Gpr137:NM_001177361:exon3:c.A497G:p.D166G,Gpr137:NM_207220:exon3:c.A539G:p.D180G"	19qA	chr19-4320845-60850867	3	2	1	0.776	3.172152134	NA	1	0.621349387	2	0.5029557	GTC	nonsynonymous	AG	8	AGAGAGAG	NA
DC1638T7	chr19	32052883	DC1638tail	autochthonous	sgMsh2	32052883	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	122	9	1	0.111111111	exonic	Asah2	nonsynonymous SNV	Asah2:NM_018830:exon7:c.G388A:p.A130T	19qC1	chr19-4320845-60850867	3	2	1	0.776	3.172152134	NA	1	0.290235569	2	0.9927184	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr19	43388035	DC1638tail	autochthonous	sgMsh2	43388035	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	132	0	0	NA	exonic	Hpse2	nonsynonymous SNV	Hpse2:NM_001081257:exon1:c.C277T:p.L93F	19qC3	chr19-4320845-60850867	3	2	1	0.776	3.172152134	NA	1	0.449660741	2	0.9998017	AGC	nonsynonymous	AGCC	9	AGCCAGCCA	NA
DC1638T7	chr2	30796432	DC1638tail	autochthonous	sgMsh2	30796432	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.151	31	0	0	NA	exonic	1700001O22Rik	nonsynonymous SNV	1700001O22Rik:NM_198000:exon5:c.G847A:p.A283T	2qB	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.617261562	2	0.6130495	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr2	65763706	DC1638tail	autochthonous	sgMsh2	65763706	G	T	SNV	Mutect2;Vardict	2	0.024	367	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.G4898T:p.R1633M,Scn2a:NM_001346679:exon27:c.G4898T:p.R1633M,Scn2a:NM_001346680:exon27:c.G4898T:p.R1633M"	2qC1.3	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.098107798	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr2	67515025	DC1638tail	autochthonous	sgMsh2	67515025	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	123	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.C7609T:p.L2537F,Xirp2:NM_001083919:exon7:c.C7609T:p.L2537F"	2qC1.3	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.441485091	2	0.999795	GCT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr2	69489176	DC1638tail	autochthonous	sgMsh2	69489176	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	137	9	1	0.111111111	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon36:c.A6002T:p.N2001I	2qC2	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.237093845	2	0.6707428	GTT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr2	70257992	DC1638tail	autochthonous	sgMsh2	70257992	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	159	12	0	0	exonic	Myo3b	synonymous SNV	Myo3b:NM_177376:exon23:c.G2598A:p.E866E	2qC2	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.539592889	2	0.9662861	AGA	synonymous	A	5	AAAAA	NA
DC1638T7	chr2	86228686	DC1638tail	autochthonous	sgMsh2	86228686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	162	0	0	NA	exonic	Olfr1047	nonsynonymous SNV	Olfr1047:NM_147012:exon1:c.A284C:p.K95T	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.425133791	2	0.9999942	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr2	86677262	DC1638tail	autochthonous	sgMsh2	86677262	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	174	0	0	NA	exonic	Olfr1086	nonsynonymous SNV	Olfr1086:NM_146592:exon1:c.C70A:p.L24I	2qD	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.335201643	2	0.9999917	AGG	nonsynonymous	AAGGA	10	AAGGAAAGGA	NA
DC1638T7	chr2	106384124	DC1638tail	autochthonous	sgMsh2	106384124	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	128	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon21:c.G2088A:p.Q696Q	2qE3	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.359728592	2	0.9999797	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
DC1638T7	chr2	122010587	DC1638tail	autochthonous	sgMsh2	122010587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	204	66	12	0.181818182	exonic	Ctdspl2	nonsynonymous SNV	"Ctdspl2:NM_001290991:exon13:c.A1354G:p.R452G,Ctdspl2:NM_001290992:exon13:c.A1015G:p.R339G,Ctdspl2:NM_212450:exon13:c.A1357G:p.R453G"	2qE5	chr2-4925576-181511691	3	2	1	0.776	3.172152134	NA	1	0.371992067	2	3.18E-09	CAG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr3	53652112	DC1638tail	autochthonous	sgMsh2	53652112	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	184	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.C4973T:p.T1658I	3qC	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.163512997	3	0.9996911	GGT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr3	72938683	DC1638tail	autochthonous	sgMsh2	72938683	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	160	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon18:c.G2045A:p.R682H	3qE3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	1	1	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr3	73049777	DC1638tail	autochthonous	sgMsh2	73049777	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	107	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.C1661T:p.A554V,Slitrk3:NM_198864:exon2:c.C1661T:p.A554V"	3qE3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.24935732	2	0.8304763	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr3	94879077	DC1638tail	autochthonous	sgMsh2	94879077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	110	39	1	0.025641026	exonic	Pogz	nonsynonymous SNV	"Pogz:NM_001368812:exon17:c.T2498C:p.F833S,Pogz:NM_001368811:exon18:c.T2657C:p.F886S,Pogz:NM_001165948:exon19:c.T2948C:p.F983S,Pogz:NM_172683:exon19:c.T2975C:p.F992S"	3qF2.1	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.384255542	2	0.9999627	TTT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr3	104089499	DC1638tail	autochthonous	sgMsh2	104089499	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	202	56	3	0.053571429	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon4:c.A729T:p.E243D,Magi3:NM_133853:exon4:c.A729T:p.E243D"	3qF2.2	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.188039946	3	0.9968421	CTT	nonsynonymous	TCT	14	TCTTCTTCTTCTTC	NA
DC1638T7	chr3	114165265	DC1638tail	autochthonous	sgMsh2	114165265	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.019	429	0	0	NA	exonic	Col11a1	synonymous SNV	Col11a1:NM_007729:exon44:c.C3408T:p.G1136G	3qF3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.077668673	3	1	GCA	synonymous	NA	NA	NA	NA
DC1638T7	chr3	129868573	DC1638tail	autochthonous	sgMsh2	129868573	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	195	361	29	0.08033241	exonic	Cfi	synonymous SNV	"Cfi:NM_001329552:exon11:c.G1197A:p.A399A,Cfi:NM_007686:exon11:c.G1200A:p.A400A"	3qG3	chr3-11824041-159911278	3	2	1	0.776	3.172152134	NA	1	0.408782491	2	0.9999999	CGC	synonymous	NA	NA	NA	NA
DC1638T7	chr4	43000166	DC1638tail	autochthonous	sgMsh2	43000166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	18	6	1	0.166666667	exonic	Vcp	nonsynonymous SNV	Vcp:NM_009503:exon1:c.G13A:p.A5T	4qA5	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	1	1	0.9216396	GCT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr4	44037131	DC1638tail	autochthonous	sgMsh2	44037131	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	37	126	24	0.19047619	exonic	Gne	nonsynonymous SNV	"Gne:NM_001357539:exon11:c.G1544A:p.R515H,Gne:NM_001190414:exon12:c.G2156A:p.R719H,Gne:NM_015828:exon12:c.G2249A:p.R750H"	4qB1	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.584558963	2	7.79E-05	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr4	45900454	DC1638tail	autochthonous	sgMsh2	45900454	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	136	0	0	NA	exonic	Ccdc180	nonsynonymous SNV	Ccdc180:NM_198660:exon8:c.G817T:p.D273Y	4qB1	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.592734613	1	0.5835814	CGA	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr4	85100326	DC1638tail	autochthonous	sgMsh2	85100326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	172	18	3	0.166666667	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon22:c.C3570T:p.N1190N	4qC4	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.437397266	2	0.9999921	ACG	synonymous	NA	NA	NA	NA
DC1638T7	chr4	88603291	DC1638tail	autochthonous	sgMsh2	88603291	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	436	0	0	NA	exonic	Ifna12	synonymous SNV	Ifna12:NM_177361:exon1:c.T18A:p.A6A	4qC4	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.441485091	2	1.00E-09	AAG	synonymous	NA	NA	NA	NA
DC1638T7	chr4	123475514	DC1638tail	autochthonous	sgMsh2	123475514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	234	1	0	0	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.T5453C:p.I1818T	4qD2.2	chr4-3973093-156200568	3	2	1	0.776	3.172152134	NA	1	0.633612862	1	0.9972141	GAT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr5	14857037	DC1638tail	autochthonous	sgMsh2	14857037	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	204	0	0	NA	exonic	Pclo	synonymous SNV	Pclo:NM_011995:exon24:c.C15054T:p.G5018G	5qA1	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	0.143073872	3	0.9999921	GCC	synonymous	CACT	8	CACTCACT	NA
DC1638T7	chr5	45497341	DC1638tail	autochthonous	sgMsh2	45497343	GTG	-	Deletion	Strelka2;Vardict	2	0.1124	267	297	29	0.097643098	exonic	Lap3	nonframeshift deletion	Lap3:NM_024434:exon4:c.286_288del:p.V99del	5qB3	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	0.45947152	NA	NA	CGT	inframe	GTG	11	GTGGTGGTGGT	-3
DC1638T7	chr5	121869667	DC1638tail	autochthonous	sgMsh2	121869667	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	55	0	0	NA	exonic	Cux2	nonsynonymous SNV	"Cux2:NM_001312908:exon18:c.G1930A:p.A644T,Cux2:NM_007804:exon18:c.G1930A:p.A644T"	5qF	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	1	1	0.9999502	GCT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr5	130617956	DC1638tail	autochthonous	sgMsh2	130617956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	97	0	0	NA	exonic	Caln1	nonsynonymous SNV	"Caln1:NM_021371:exon3:c.G232A:p.A78T,Caln1:NM_181045:exon4:c.G358A:p.A120T"	5qG1.3	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	0.510978114	2	0.9779892	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr5	147190098	DC1638tail	autochthonous	sgMsh2	147190098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	47	0	0	NA	exonic	Gsx1	nonsynonymous SNV	Gsx1:NM_008178:exon2:c.C730T:p.P244S	5qG3	chr5-3344487-150478141	3	2	1	0.776	3.172152134	NA	1	0.649964161	1	0.6493507	GCC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr6	38570580	DC1638tail	autochthonous	sgMsh2	38570580	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.077	346	236	0	0	exonic	Luc7l2	frameshift deletion	"Luc7l2:NM_001170848:exon2:c.132delC:p.H46Tfs*14,Luc7l2:NM_001170849:exon2:c.132delC:p.H46Tfs*14,Luc7l2:NM_138680:exon2:c.132delC:p.H46Tfs*14,Luc7l2:NM_001331222:exon5:c.129delC:p.H45Tfs*14"	6qB1	chr6-6042258-149014300	4	2	2	0.776	3.172152134	NA	1	0.314762518	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1638T7	chr7	6317345	DC1638tail	autochthonous	sgMsh2	6317345	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	100	0	0	NA	exonic	Zfp583	nonsynonymous SNV	Zfp583:NM_001033249:exon5:c.A667G:p.T223A	7qA1	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.188039946	3	0.9184232	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr7	43352269	DC1638tail	autochthonous	sgMsh2	43352269	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	176	26	0	0	exonic	Siglecf	frameshift deletion	"Siglecf:NM_001271019:exon4:c.502delC:p.I170Sfs*21,Siglecf:NM_145581:exon4:c.502delC:p.I170Sfs*21"	7qB3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.331113818	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1638T7	chr7	102494262	DC1638tail	autochthonous	sgMsh2	102494262	C	T	SNV	Mutect2;Vardict	2	0.03	290	0	0	NA	exonic	Olfr545	nonsynonymous SNV	Olfr545:NM_146840:exon1:c.G512A:p.R171H	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.122634747	3	1.85E-09	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr7	103740610	DC1638tail	autochthonous	sgMsh2	103740610	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	189	0	0	NA	exonic	Olfr629	nonsynonymous SNV	Olfr629:NM_146821:exon1:c.A629T:p.D210V	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.523241589	2	0.9945878	GTC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr7	104003345	DC1638tail	autochthonous	sgMsh2	104003345	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.027	364	0	0	NA	exonic	Olfr638	nonsynonymous SNV	Olfr638:NM_147120:exon1:c.G87T:p.E29D	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.110371273	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr7	104348204	DC1638tail	autochthonous	sgMsh2	104348204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	535	9	0	0	exonic	Trim12c	synonymous SNV	"Trim12c:NM_001146007:exon2:c.C144T:p.C48C,Trim12c:NM_175677:exon2:c.C144T:p.C48C"	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.437397266	2	1.00E-09	CGC	synonymous	NA	NA	NA	NA
DC1638T7	chr7	108255427	DC1638tail	autochthonous	sgMsh2	108255427	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	502	0	0	NA	exonic	Olfr488	nonsynonymous SNV	Olfr488:NM_146732:exon1:c.G710A:p.R237H	7qE3	chr7-3894475-143497059	3	2	1	0.776	3.172152134	NA	1	0.175776471	3	4.28E-09	GCG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr8	45033968	DC1638tail	autochthonous	sgMsh2	45033968	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	69	35	3	0.085714286	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon15:c.C10211T:p.T3404M	8qB1.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.564119838	2	0.7892203	ACG	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr8	48276309	DC1638tail	autochthonous	sgMsh2	48276309	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	172	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon21:c.C4613T:p.T1538M,Tenm3:NM_011857:exon23:c.C4661T:p.T1554M"	8qB1.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.376079892	2	0.9999998	CGT	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr8	66705107	DC1638tail	autochthonous	sgMsh2	66705107	G	A	SNV	Mutect2;Vardict	2	0.029	186	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon3:c.G1068A:p.T356T,Npy1r:NM_001358955:exon4:c.G1068A:p.T356T"	8qB3.1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.118546923	3	0.9999987	CGG	synonymous	NA	NA	NA	NA
DC1638T7	chr8	104213971	DC1638tail	autochthonous	sgMsh2	104213971	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	101	1	0	0	exonic	Bean1	nonsynonymous SNV	"Bean1:NM_001141925:exon3:c.G39T:p.Q13H,Bean1:NM_001141922:exon5:c.G435T:p.Q145H"	8qD3	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.555944188	2	0.8559443	AGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr8	112841772	DC1638tail	autochthonous	sgMsh2	112841772	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	208	0	0	NA	exonic	Cntnap4	synonymous SNV	Cntnap4:NM_130457:exon16:c.C2439T:p.G813G	8qE1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.151249522	3	0.9999814	GCG	synonymous	NA	NA	NA	NA
DC1638T7	chr8	122487178	DC1638tail	autochthonous	sgMsh2	122487178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	51	19	1	0.052631579	exonic	Piezo1	synonymous SNV	"Piezo1:NM_001037298:exon37:c.C5043T:p.C1681C,Piezo1:NM_001357349:exon37:c.C5046T:p.C1682C"	8qE1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.596822437	2	0.6221208	CGC	synonymous	NA	NA	NA	NA
DC1638T7	chr8	122487889	DC1638tail	autochthonous	sgMsh2	122487889	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	49	28	5	0.178571429	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon35:c.C4694T:p.A1565V,Piezo1:NM_001357349:exon35:c.C4697T:p.A1566V"	8qE1	chr8-3511896-126969919	4	2	2	0.776	3.172152134	NA	1	0.453748565	2	0.9776249	GGC	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr9	22435170	DC1638tail	autochthonous	sgMsh2	22435170	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	128	136	13	0.095588235	exonic	9530077C05Rik	nonsynonymous SNV	"9530077C05Rik:NM_001378983:exon5:c.T773C:p.L258P,9530077C05Rik:NM_026739:exon5:c.T1073C:p.L358P,9530077C05Rik:NM_001378982:exon6:c.T773C:p.L258P"	9qA3	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.286147744	2	0.99165	CTA	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr9	38143329	DC1638tail	autochthonous	sgMsh2	38143329	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.021	422	0	0	NA	exonic	Olfr890	nonsynonymous SNV	Olfr890:NM_146481:exon1:c.T193C:p.Y65H	9qA5.1	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.085844323	3	1	GTA	nonsynonymous	NA	NA	NA	NA
DC1638T7	chr9	105937282	DC1638tail	autochthonous	sgMsh2	105937282	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	168	0	0	NA	exonic	Col6a5	synonymous SNV	Col6a5:NM_001167923:exon5:c.A1530G:p.K510K	9qF1	chr9-5306814-124108155	2	1	1	0.776	3.172152134	NA	1	0.838004107	1	3.21E-09	CTT	synonymous	NA	NA	NA	NA
DC1638T7	chrX	100593919	DC1638tail	autochthonous	sgMsh2	100593919	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	1	1	1	exonic	P2ry4	synonymous SNV	P2ry4:NM_020621:exon3:c.C372T:p.C124C	XqC3	NA	NA	NA	NA	0.776	3.172152134	NA	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
DC1638T7	chrX	106238973	DC1638tail	autochthonous	sgMsh2	106238973	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	212	0	0	NA	exonic	Fnd3c2	frameshift deletion	Fnd3c2:NM_001033424:exon16:c.1963delA:p.I655Sfs*1	XqD	NA	NA	NA	NA	0.776	3.172152134	NA	NA	NA	NA	NA	ATT	frameshift	T	5	TTTTT	-1
DC1638T7	chrX	151916043	DC1638tail	autochthonous	sgMsh2	151916043	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.136	115	17	0	0	exonic	Huwe1	frameshift deletion	Huwe1:NM_021523:exon62:c.8756delC:p.P2921Lfs*24	XqF3	NA	NA	NA	NA	0.776	3.172152134	NA	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
DC1640T2	chr1	44091426	DC1640tail	autochthonous	sgMsh2	44091426	A	-	Deletion	Mutect2;Strelka2	2	0.158	100	46	1	0.02173913	exonic	Tex30	frameshift deletion	"Tex30:NM_001356297:exon3:c.181delT:p.C61Afs*1,Tex30:NM_001356296:exon4:c.181delT:p.C61Afs*1,Tex30:NM_029368:exon5:c.181delT:p.C61Afs*1"	1qC1.1	chr1-4783928-193194439	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.965421907	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1640T2	chr1	72300706	DC1640tail	autochthonous	sgMsh2	72300706	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	85	0	0	NA	exonic	Tmem169	nonsynonymous SNV	Tmem169:NM_175564:exon3:c.C294A:p.D98E	1qC3	chr1-4783928-193194439	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.299402996	3	0.9946643	ACA	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr1	87089736	DC1640tail	autochthonous	sgMsh2	87089736	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	56	0	0	NA	exonic	Alppl2	nonsynonymous SNV	Alppl2:NM_007433:exon1:c.G28T:p.G10C	1qC5	chr1-4783928-193194439	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.647688115	2	0.9164434	CCC	nonsynonymous	CAG	11	CAGCAGCAGCA	NA
DC1640T2	chr1	97761471	DC1640tail	autochthonous	sgMsh2	97761471	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	162	4	0	0	exonic	Ppip5k2	nonsynonymous SNV	Ppip5k2:NM_173760:exon2:c.G86A:p.R29H	1qD	chr1-4783928-193194439	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.287182466	3	0.9999875	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr10	75742269	DC1640tail	autochthonous	sgMsh2	75742269	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.15	23	2	0	0	exonic	Cabin1	nonsynonymous SNV	Cabin1:NM_172549:exon12:c.G1593T:p.R531S	10qC1	chr10-5103436-130453386	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.916539785	1	0.8683638	CCC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr10	79576552	DC1640tail	autochthonous	sgMsh2	79576552	G	-	Deletion	Strelka2;Vardict	2	0.0556	126	1	0	0	exonic	Theg	frameshift deletion	"Theg:NM_199226:exon7:c.1032delC:p.K345Nfs*18,Theg:NM_011583:exon8:c.1104delC:p.K369Nfs*18"	10qC1	chr10-5103436-130453386	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.339730747	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1640T2	chr10	81022343	DC1640tail	autochthonous	sgMsh2	81022343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	63	0	0	NA	exonic	Diras1	nonsynonymous SNV	Diras1:NM_145217:exon2:c.C73T:p.L25F	10qC1	chr10-5103436-130453386	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	0.9971854	AGC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr11	9636614	DC1640tail	autochthonous	sgMsh2	9636614	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	129	0	0	NA	exonic	Abca13	frameshift deletion	Abca13:NM_178259:exon59:c.14740delC:p.Q4916Sfs*30	11qA1	chr11-3133205-69579350	4	2	2	0.794	4.851550594	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
DC1640T2	chr11	59132609	DC1640tail	autochthonous	sgMsh2	59132609	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	68	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon5:c.G1941T:p.E647D,Obscn:NM_199152:exon5:c.G1941T:p.E647D"	11qB1.3	chr11-3133205-69579350	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	0.452159627	2	0.830585	CCT	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr11	59589400	DC1640tail	autochthonous	sgMsh2	59589400	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	91	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.C688A:p.L230M	11qB1.3	chr11-3133205-69579350	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	0.9997063	AGC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr11	118023363	DC1640tail	autochthonous	sgMsh2	118023363	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	150	7	1	0.142857143	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon81:c.G13249A:p.V4417I	11qE2	chr11-69590981-121956809	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	0.592695727	2	0.9999823	ACG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr12	70043688	DC1640tail	autochthonous	sgMsh2	70043688	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	85	4	0	0	exonic	Nin	synonymous SNV	"Nin:NM_001081453:exon16:c.C2952T:p.A984A,Nin:NM_001286079:exon17:c.C2952T:p.A984A,Nin:NM_001286080:exon18:c.C2952T:p.A984A,Nin:NM_008697:exon18:c.C2952T:p.A984A"	12qC2	chr12-3236683-116248397	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.928760315	1	0.9949471	CGG	synonymous	NA	NA	NA	NA
DC1640T2	chr13	48490013	DC1640tail	autochthonous	sgMsh2	48490013	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	exonic	Zfp169	nonsynonymous SNV	"Zfp169:NM_001164575:exon5:c.G1637A:p.R546H,Zfp169:NM_026450:exon5:c.G1637A:p.R546H"	13qA5	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr13	75707659	DC1640tail	autochthonous	sgMsh2	75707659	G	-	Deletion	Strelka2;Vardict	2	0.5714	7	9	4	0.444444444	exonic	Ell2	frameshift deletion	Ell2:NM_138953:exon1:c.9delG:p.A6Lfs*26	13qC1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	CGG	frameshift	GGC	8	GGCGGCGG	-1
DC1640T2	chr14	59226489	DC1640tail	autochthonous	sgMsh2	59226489	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	105	36	16	0.444444444	exonic	Rcbtb1	nonsynonymous SNV	"Rcbtb1:NM_027764:exon8:c.C1036A:p.L346M,Rcbtb1:NM_001360610:exon9:c.C1036A:p.L346M"	14qC3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	CTGT	8	CTGTCTGT	NA
DC1640T2	chr15	76519357	DC1640tail	autochthonous	sgMsh2	76519357	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	28	0	0	NA	exonic	Scrt1	synonymous SNV	Scrt1:NM_130893:exon2:c.C432A:p.A144A	15qD3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GGG	synonymous	G	5	GGGGG	NA
DC1640T2	chr17	23854458	DC1640tail	autochthonous	sgMsh2	23854458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	152	1	0	0	exonic	Prss32	synonymous SNV	Prss32:NM_027220:exon2:c.C210T:p.S70S	17qA3.3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GCG	synonymous	NA	NA	NA	NA
DC1640T2	chr17	25745027	DC1640tail	autochthonous	sgMsh2	25745027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	37	0	0	NA	exonic	Mslnl	synonymous SNV	Mslnl:NM_177822:exon12:c.C1329T:p.I443I	17qA3.3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	TCG	synonymous	G	5	GGGGG	NA
DC1640T2	chr17	34803605	DC1640tail	autochthonous	sgMsh2	34803605	C	T	SNV	Mutect2;Vardict	2	0.055	92	78	1	0.012820513	exonic	Cyp21a1	nonsynonymous SNV	Cyp21a1:NM_009995:exon3:c.G379A:p.G127S	17qB1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	CCC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr17	35886225	DC1640tail	autochthonous	sgMsh2	35886225	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	50	23	2	0.086956522	exonic	Dhx16	frameshift deletion	Dhx16:NM_026987:exon12:c.1999delC:p.A670Pfs*80	17qB1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1640T2	chr17	66380067	DC1640tail	autochthonous	sgMsh2	66380067	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	141	58	32	0.551724138	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon5:c.C1843T:p.P615S,Mtcl1:NM_172963:exon5:c.C1843T:p.P615S"	17qE1.1	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr17	87718639	DC1640tail	autochthonous	sgMsh2	87718639	A	-	Deletion	Strelka2;Vardict	2	0.6479	71	13	4	0.307692308	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2044delA:p.T682Pfs*2	17qE4	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GAC	frameshift	NA	NA	NA	-1
DC1640T2	chr19	8959183	DC1640tail	autochthonous	sgMsh2	8959183	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	62	21	0	0	exonic	Tut1	synonymous SNV	Tut1:NM_197993:exon3:c.C370A:p.R124R	19qA	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
DC1640T2	chr19	42333924	DC1640tail	autochthonous	sgMsh2	42333924	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	61	0	0	NA	exonic	Crtac1	frameshift deletion	"Crtac1:NM_001356588:exon3:c.358delG:p.D120Tfs*36,Crtac1:NM_001356589:exon3:c.376delG:p.D126Tfs*36,Crtac1:NM_145123:exon3:c.376delG:p.D126Tfs*36"	19qC3	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	TCC	frameshift	NA	NA	NA	-1
DC1640T2	chr2	69397704	DC1640tail	autochthonous	sgMsh2	69397704	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.434	144	0	0	NA	exonic	Dhrs9	frameshift insertion	Dhrs9:NM_175512:exon4:c.662dupA:p.L224Tfs*20	2qC2	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	2	1	NA	NA	TGA	frameshift	A	8	AAAAAAAA	1
DC1640T2	chr2	85579378	DC1640tail	autochthonous	sgMsh2	85579378	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	364	0	0	NA	exonic	Olfr996	synonymous SNV	Olfr996:NM_146437:exon1:c.C138T:p.I46I	2qD	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.281072201	3	1.00E-09	TCG	synonymous	NA	NA	NA	NA
DC1640T2	chr2	86162189	DC1640tail	autochthonous	sgMsh2	86162189	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	240	0	0	NA	exonic	Olfr1043	synonymous SNV	Olfr1043:NM_146577:exon1:c.G759A:p.G253G	2qD	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	2.73E-09	TCC	synonymous	NA	NA	NA	NA
DC1640T2	chr2	119326468	DC1640tail	autochthonous	sgMsh2	119326468	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	56	4	0	0	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon2:c.C220T:p.P74S	2qE5	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	0.9950551	ACC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr2	119328724	DC1640tail	autochthonous	sgMsh2	119328724	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.453	117	12	0	0	exonic	Dll4	frameshift deletion	Dll4:NM_019454:exon6:c.765delC:p.H257Tfs*108	2qE5	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	3	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
DC1640T2	chr2	168894280	DC1640tail	autochthonous	sgMsh2	168894280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	111	5	2	0.4	exonic	Zfp64	synonymous SNV	"Zfp64:NM_001370946:exon5:c.G825A:p.P275P,Zfp64:NM_001369059:exon9:c.G1476A:p.P492P"	2qH3	chr2-3197272-181511691	5	3	2	0.794	4.851550594	RARE KARYOTYPE	2	1	1	0.9999417	CCG	synonymous	NA	NA	NA	NA
DC1640T2	chr3	59209995	DC1640tail	autochthonous	sgMsh2	59209995	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	243	0	0	NA	exonic	P2ry13	nonsynonymous SNV	P2ry13:NM_028808:exon2:c.G361A:p.A121T	3qD	chr3-15331914-159911278	6	3	3	0.794	4.851550594	RARE KARYOTYPE	1	0.635467584	2	0.9999993	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr3	114194104	DC1640tail	autochthonous	sgMsh2	114194104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	121	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon56:c.A4166G:p.K1389R	3qF3	chr3-15331914-159911278	6	3	3	0.794	4.851550594	RARE KARYOTYPE	1	0.916539785	1	0.9986584	AAA	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr4	125065010	DC1640tail	autochthonous	sgMsh2	125065010	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	96	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon2:c.C112T:p.P38S	4qD2.2	chr4-5799947-156200568	4	3	1	0.794	4.851550594	RARE KARYOTYPE	1	0.568254667	2	0.9992709	GGC	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr4	152555632	DC1640tail	autochthonous	sgMsh2	152555632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	20	0	0	NA	exonic	Nphp4	nonsynonymous SNV	"Nphp4:NM_001355738:exon21:c.T2974G:p.F992V,Nphp4:NM_001355739:exon21:c.T2974G:p.F992V,Nphp4:NM_153424:exon21:c.T2974G:p.F992V"	4qE2	chr4-5799947-156200568	4	3	1	0.794	4.851550594	RARE KARYOTYPE	1	1	1	0.9163718	GTT	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr5	14675519	DC1640tail	autochthonous	sgMsh2	14675519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	112	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.C4390T:p.R1464W,Pclo:NM_011995:exon5:c.C4390T:p.R1464W"	5qA1	chr5-3582301-150478141	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	0.9999462	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr5	115952527	DC1640tail	autochthonous	sgMsh2	115952527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	28	1	0	0	exonic	Cit	nonsynonymous SNV	Cit:NM_007708:exon22:c.C2779T:p.R927C	5qF	chr5-3582301-150478141	5	3	2	0.794	4.851550594	RARE KARYOTYPE	2	1	1	0.9544215	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr5	120808146	DC1640tail	autochthonous	sgMsh2	120808146	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	132	10	5	0.5	exonic	Oas1c	nonsynonymous SNV	Oas1c:NM_033541:exon3:c.C286T:p.R96W	5qF	chr5-3582301-150478141	5	3	2	0.794	4.851550594	RARE KARYOTYPE	3	1	1	0.9999893	CGT	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr6	53818376	DC1640tail	autochthonous	sgMsh2	53818376	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	65	0	0	NA	exonic	Tril	synonymous SNV	Tril:NM_025817:exon1:c.G1860T:p.L620L	6qB3	chr6-3494310-149014300	6	4	2	0.794	4.851550594	RARE KARYOTYPE	1	0.403277505	3	0.5541053	GCA	synonymous	NA	NA	NA	NA
DC1640T2	chr6	57159297	DC1640tail	autochthonous	sgMsh2	57159297	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.549	340	0	0	NA	exonic	Vmn1r12	frameshift deletion	Vmn1r12:NM_001101579:exon1:c.378delA:p.K128Nfs*2	6qB3	chr6-3494310-149014300	6	4	2	0.794	4.851550594	RARE KARYOTYPE	4	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
DC1640T2	chr6	128379807	DC1640tail	autochthonous	sgMsh2	128379807	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	88	0	0	NA	exonic	Tex52	synonymous SNV	Tex52:NM_027697:exon2:c.G462A:p.L154L	6qF3	chr6-3494310-149014300	6	4	2	0.794	4.851550594	RARE KARYOTYPE	1	0.611026523	2	0.9957843	TGT	synonymous	NA	NA	NA	NA
DC1640T2	chr7	45630334	DC1640tail	autochthonous	sgMsh2	45630334	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	58	15	0	0	exonic	Rasip1	nonsynonymous SNV	Rasip1:NM_028544:exon4:c.C1000A:p.Q334K	7qB3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	0.433828831	2	0.6918705	GCA	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr7	108346492	DC1640tail	autochthonous	sgMsh2	108346492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	234	0	0	NA	exonic	Olfr493	nonsynonymous SNV	Olfr493:NM_146310:exon1:c.C488A:p.T163N	7qE3	chr7-4692757-143062472	5	3	2	0.794	4.851550594	RARE KARYOTYPE	1	1	1	3.81E-09	GGT	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr8	77242446	DC1640tail	autochthonous	sgMsh2	77242446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	90	15	8	0.533333333	exonic	Nr3c2	synonymous SNV	Nr3c2:NM_001083906:exon9:c.C2859T:p.P953P	8qC1	chr8-3203083-126969919	4	2	2	0.794	4.851550594	RARE KARYOTYPE	2	1	1	0.9996816	CCG	synonymous	NA	NA	NA	NA
DC1640T2	chr8	105699664	DC1640tail	autochthonous	sgMsh2	105699664	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	54	35	0	0	exonic	Acd	nonsynonymous SNV	Acd:NM_001012638:exon7:c.G554T:p.C185F	8qD3	chr8-3203083-126969919	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	0.488821219	2	0.9144555	ACA	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr8	105976162	DC1640tail	autochthonous	sgMsh2	105976162	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	203	3	0	0	exonic	Dpep3	frameshift deletion	Dpep3:NM_027960:exon7:c.967delG:p.V323Cfs*12	8qD3	chr8-3203083-126969919	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1640T2	chr8	110742385	DC1640tail	autochthonous	sgMsh2	110742385	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	49	157	8	0.050955414	exonic	Il34	nonsynonymous SNV	Il34:NM_001135100:exon7:c.C602A:p.P201Q	8qE1	chr8-3203083-126969919	4	2	2	0.794	4.851550594	RARE KARYOTYPE	1	0.702680502	2	0.7212736	CGG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr9	27010380	DC1640tail	autochthonous	sgMsh2	27010380	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.115	46	22	3	0.136363636	exonic	Vps26b	nonsynonymous SNV	Vps26b:NM_178027:exon5:c.G848A:p.R283H	9qA4	chr9-3342997-123664738	3	2	1	0.794	4.851550594	RARE KARYOTYPE	1	0.702680502	2	0.6993977	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T2	chr9	39461606	DC1640tail	autochthonous	sgMsh2	39461606	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	268	0	0	NA	exonic	Olfr954	synonymous SNV	Olfr954:NM_146331:exon1:c.G174T:p.L58L	9qA5.1	chr9-3342997-123664738	3	2	1	0.794	4.851550594	RARE KARYOTYPE	1	1	1	1.18E-09	TGC	synonymous	NA	NA	NA	NA
DC1640T2	chrX	23907323	DC1640tail	autochthonous	sgMsh2	23907323	C	T	SNV	Mutect2;Strelka2	2	0.039	190	0	0	NA	exonic	Gm4907	synonymous SNV	Gm4907:NM_001034864:exon2:c.C1062T:p.C354C	XqA2	NA	NA	NA	NA	0.794	4.851550594	RARE KARYOTYPE	NA	NA	NA	NA	GCC	synonymous	NA	NA	NA	NA
DC1640T8	chr1	46689003	DC1640tail	autochthonous	sgMsh2	46689003	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	145	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon47:c.C8860T:p.L2954F	1qC1.1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.434176353	2	0.9851837	GCT	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr1	51132146	DC1640tail	autochthonous	sgMsh2	51132146	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	189	6	0	0	exonic	Tmeff2	stopgain	Tmeff2:NM_019790:exon6:c.T540A:p.C180X	1qC1.1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.659304832	2	0.9770439	GTG	nonsynonymous	GT	9	GTGTGTGTG	NA
DC1640T8	chr1	87805333	DC1640tail	autochthonous	sgMsh2	87805333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	152	0	0	NA	exonic	Sag	nonsynonymous SNV	Sag:NM_009118:exon2:c.A22G:p.N8D	1qD	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	1	1	1.07E-09	CAA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr1	89152339	DC1640tail	autochthonous	sgMsh2	89152339	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	176	91	4	0.043956044	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon5:c.A2615G:p.D872G	1qD	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.353773324	3	0.5282754	GAT	nonsynonymous	GATG	8	GATGGATG	NA
DC1640T8	chr1	133272386	DC1640tail	autochthonous	sgMsh2	133272386	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	40	24	0	0	exonic	Plekha6	frameshift deletion	"Plekha6:NM_001160268:exon8:c.762delA:p.A256Pfs*79,Plekha6:NM_182930:exon8:c.702delA:p.A236Pfs*79"	1qE4	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
DC1640T8	chr1	158688730	DC1640tail	autochthonous	sgMsh2	158688730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	123	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon23:c.G3889A:p.G1297R,Astn1:NM_007495:exon23:c.G3865A:p.G1289R"	1qH1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	2	1	1	7.08E-09	CGG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr1	163959302	DC1640tail	autochthonous	sgMsh2	163959303	AT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.08	240	8	0	0	exonic	BC055324	frameshift deletion	"BC055324:NM_001357049:exon20:c.2196_2197del:p.Q734Nfs*37,BC055324:NM_201364:exon20:c.2196_2197del:p.Q734Nfs*37"	1qH2.1	chr1-4867294-195062457	4	2	2	0.769	4.12199525	NA	1	0.428816151	NA	NA	GAT	frameshift	NA	NA	NA	-2
DC1640T8	chr10	11457202	DC1640tail	autochthonous	sgMsh2	11457202	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	55	0	0	NA	exonic	Epm2a	nonsynonymous SNV	Epm2a:NM_010146:exon4:c.A778G:p.T260A	10qA1	chr10-6920214-130423120	4	2	2	0.769	4.12199525	NA	1	0.728987456	1	9.86E-05	CAC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr10	78752849	DC1640tail	autochthonous	sgMsh2	78752849	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	63	0	0	NA	exonic	Ccdc105	synonymous SNV	Ccdc105:NM_027630:exon1:c.G126A:p.E42E	10qC1	chr10-6920214-130423120	4	2	2	0.769	4.12199525	NA	1	0.525299785	2	0.9832898	CCT	synonymous	NA	NA	NA	NA
DC1640T8	chr11	29560765	DC1640tail	autochthonous	sgMsh2	29560765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	269	0	0	NA	exonic	Clhc1	nonsynonymous SNV	"Clhc1:NM_001163521:exon6:c.C733T:p.L245F,Clhc1:NM_028504:exon6:c.C766T:p.L256F"	11qA3.3	chr11-3133205-69579350	4	2	2	0.769	4.12199525	NA	1	0.235848883	3	0.9999932	ACT	nonsynonymous	CA	9	CACACACAC	NA
DC1640T8	chr11	32213453	DC1640tail	autochthonous	sgMsh2	32213453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	59	54	20	0.37037037	exonic	Rhbdf1	nonsynonymous SNV	"Rhbdf1:NM_001291818:exon8:c.C379T:p.R127W,Rhbdf1:NM_010117:exon8:c.C1018T:p.R340W"	11qA4	chr11-3133205-69579350	4	2	2	0.769	4.12199525	NA	1	1	1	0.9998971	CGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr11	55296357	DC1640tail	autochthonous	sgMsh2	55296357	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	111	5	0	0	exonic	Fat2	frameshift deletion	Fat2:NM_001029988:exon4:c.3662delC:p.P1221Hfs*1	11qB1.3	chr11-3133205-69579350	4	2	2	0.769	4.12199525	NA	1	0.423455949	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1640T8	chr11	98152821	DC1640tail	autochthonous	sgMsh2	98152821	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	64	42	5	0.119047619	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-69590981-121956809	4	2	2	0.769	4.12199525	NA	2	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
DC1640T8	chr11	115994368	DC1640tail	autochthonous	sgMsh2	115994368	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	169	77	0	0	exonic	Itgb4	nonsynonymous SNV	"Itgb4:NM_001005608:exon26:c.G3072T:p.Q1024H,Itgb4:NM_133663:exon26:c.G3072T:p.Q1024H"	11qE2	chr11-69590981-121956809	4	2	2	0.769	4.12199525	NA	1	0.251929489	3	0.9978981	AGG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr11	119442828	DC1640tail	autochthonous	sgMsh2	119442828	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	134	16	0	0	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon29:c.G8865T:p.Q2955H	11qE2	chr11-69590981-121956809	4	2	2	0.769	4.12199525	NA	1	0.316251911	3	0.8379177	AGG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr12	73103958	DC1640tail	autochthonous	sgMsh2	73103958	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	137	1	0	0	exonic	Six4	synonymous SNV	Six4:NM_011382:exon3:c.G1812A:p.S604S	12qC3	chr12-3236683-119465464	4	2	2	0.769	4.12199525	NA	1	0.493138574	2	0.9989679	ACG	synonymous	NA	NA	NA	NA
DC1640T8	chr12	104946929	DC1640tail	autochthonous	sgMsh2	104946929	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	157	2	0	0	exonic	Syne3	nonsynonymous SNV	"Syne3:NM_172500:exon11:c.G1772A:p.R591H,Syne3:NM_001042699:exon13:c.G2033A:p.R678H"	12qE	chr12-3236683-119465464	4	2	2	0.769	4.12199525	NA	1	0.905874119	1	0.9999999	ACG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr13	47063034	DC1640tail	autochthonous	sgMsh2	47063034	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.164	75	19	3	0.157894737	exonic	Kdm1b	synonymous SNV	Kdm1b:NM_172262:exon9:c.C879T:p.D293D	13qA5	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	1	0.879073109	1	0.9990967	ACG	synonymous	NA	NA	NA	NA
DC1640T8	chr13	76056756	DC1640tail	autochthonous	sgMsh2	76056756	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	133	0	0	NA	exonic	Gpr150	synonymous SNV	Gpr150:NM_175495:exon1:c.C69T:p.S23S	13qC1	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	1	0.241209085	3	0.9942671	AGC	synonymous	NA	NA	NA	NA
DC1640T8	chr13	91861317	DC1640tail	autochthonous	sgMsh2	91861317	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	79	0	0	NA	exonic	Ckmt2	nonsynonymous SNV	Ckmt2:NM_198415:exon5:c.C490T:p.R164W	13qC3	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	2	1	1	0.9999951	CGA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr13	99431705	DC1640tail	autochthonous	sgMsh2	99431705	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	205	30	0	0	exonic	Map1b	nonsynonymous SNV	Map1b:NM_008634:exon5:c.G4507A:p.V1503I	13qD1	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	1	0.407375343	2	0.9734842	ACG	nonsynonymous	ACTG	10	ACTGACTGAC	NA
DC1640T8	chr13	113210095	DC1640tail	autochthonous	sgMsh2	113210095	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.09	135	28	0	0	exonic	Esm1	frameshift deletion	Esm1:NM_023612:exon1:c.253delT:p.Y86Tfs*39	13qD2.2	chr13-3554284-119495179	4	2	2	0.769	4.12199525	NA	1	0.48241817	NA	NA	CTT	frameshift	NA	NA	NA	-1
DC1640T8	chr14	23425667	DC1640tail	autochthonous	sgMsh2	23425667	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	144	0	0	NA	exonic	Kcnma1	synonymous SNV	"Kcnma1:NM_001253373:exon18:c.G2010A:p.S670S,Kcnma1:NM_001253364:exon19:c.G2166A:p.S722S,Kcnma1:NM_010610:exon19:c.G2166A:p.S722S,Kcnma1:NM_001253362:exon20:c.G2178A:p.S726S,Kcnma1:NM_001253363:exon20:c.G2178A:p.S726S,Kcnma1:NM_001253361:exon21:c.G2187A:p.S729S"	14qA3	chr14-3072210-123592557	4	3	1	0.769	4.12199525	NA	2	1	1	1.25E-09	ACG	synonymous	NA	NA	NA	NA
DC1640T8	chr14	31375773	DC1640tail	autochthonous	sgMsh2	31375773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	125	17	0	0	exonic	Sh3bp5	synonymous SNV	"Sh3bp5:NM_001347585:exon7:c.A984G:p.G328G,Sh3bp5:NM_011894:exon8:c.A990G:p.G330G"	14qB	chr14-3072210-123592557	4	3	1	0.769	4.12199525	NA	1	0.73970786	1	0.9366907	GTC	synonymous	NA	NA	NA	NA
DC1640T8	chr14	69795965	DC1640tail	autochthonous	sgMsh2	69795965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	62	27	7	0.259259259	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon6:c.A1555G:p.I519V	14qD2	chr14-3072210-123592557	4	3	1	0.769	4.12199525	NA	1	0.632503823	2	0.8729998	ATC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr15	12458247	DC1640tail	autochthonous	sgMsh2	12458247	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	169	4	0	0	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon4:c.C529T:p.R177W	15qA1	chr15-3327923-102317306	4	2	2	0.769	4.12199525	NA	1	0.584262006	2	0.999942	CGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr15	41101179	DC1640tail	autochthonous	sgMsh2	41101179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	149	5	0	0	exonic	Zfpm2	synonymous SNV	"Zfpm2:NM_001356998:exon7:c.C900T:p.H300H,Zfpm2:NM_011766:exon8:c.C1059T:p.H353H"	15qB3.1	chr15-3327923-102317306	4	2	2	0.769	4.12199525	NA	1	0.637864024	2	0.9894018	ACC	synonymous	NA	NA	NA	NA
DC1640T8	chr15	94351598	DC1640tail	autochthonous	sgMsh2	94351598	T	-	Deletion	Strelka2;Vardict	2	0.1638	116	0	0	NA	exonic	Adamts20	frameshift deletion	Adamts20:NM_001164786:exon10:c.1537delA:p.T513Lfs*37	15qE3	chr15-3327923-102317306	4	2	2	0.769	4.12199525	NA	1	0.878001069	NA	NA	GTT	frameshift	T	10	TTTTTTTTTT	-1
DC1640T8	chr15	101202988	DC1640tail	autochthonous	sgMsh2	101202988	A	-	Deletion	Strelka2;Vardict	2	0.1412	85	94	7	0.074468085	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon6:c.1030delA:p.N346Mfs*21	15qF1	chr15-3327923-102317306	4	2	2	0.769	4.12199525	NA	1	0.756860506	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
DC1640T8	chr17	12913899	DC1640tail	autochthonous	sgMsh2	12913899	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	102	108	3	0.027777778	exonic	Mrpl18	frameshift deletion	Mrpl18:NM_026310:exon3:c.342delA:p.K114Nfs*23	17qA1	chr17-3077483-94834206	4	2	2	0.769	4.12199525	NA	1	0.943395532	NA	NA	GTT	frameshift	T	5	TTTTT	-1
DC1640T8	chr17	35516046	DC1640tail	autochthonous	sgMsh2	35516046	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	42	12	2	0.166666667	exonic	Tcf19	nonsynonymous SNV	"Tcf19:NM_001163763:exon2:c.C70T:p.P24S,Tcf19:NM_001163764:exon2:c.C70T:p.P24S,Tcf19:NM_025674:exon2:c.C70T:p.P24S"	17qB1	chr17-3077483-94834206	4	2	2	0.769	4.12199525	NA	1	0.686105841	2	0.5244345	GGG	nonsynonymous	G	5	GGGGG	NA
DC1640T8	chr17	87718633	DC1640tail	autochthonous	sgMsh2	87718640	CGTCAGAC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.588	51	10	1	0.1	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2038_2045del:p.Q681Gfs*14	17qE4	chr17-3077483-94834206	4	2	2	0.769	4.12199525	NA	2	1	NA	NA	TCG	frameshift	NA	NA	NA	-8
DC1640T8	chr18	9213005	DC1640tail	autochthonous	sgMsh2	9213005	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	125	17	4	0.235294118	exonic	Fzd8	nonsynonymous SNV	Fzd8:NM_008058:exon1:c.C86T:p.S29L	18qA1	chr18-3423654-89073490	4	3	1	0.769	4.12199525	NA	1	0.846911898	1	0.9999253	TCG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr18	44276059	DC1640tail	autochthonous	sgMsh2	44276060	TC	-	Deletion	Strelka2;Vardict	2	0.1176	289	0	0	NA	exonic	Npy6r	frameshift deletion	Npy6r:NM_010935:exon2:c.546_547del:p.L185Pfs*2	18qB3	chr18-3423654-89073490	4	3	1	0.769	4.12199525	NA	1	0.630359742	NA	NA	ATC	frameshift	TC	10	TCTCTCTCTC	-2
DC1640T8	chr19	5117342	DC1640tail	autochthonous	sgMsh2	5117342	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	43	37	13	0.351351351	exonic	Klc2	nonsynonymous SNV	"Klc2:NM_001369360:exon2:c.G80A:p.G27D,Klc2:NM_001369361:exon2:c.G80A:p.G27D,Klc2:NM_001369362:exon2:c.G80A:p.G27D,Klc2:NM_008451:exon2:c.G80A:p.G27D"	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	2	1	1	0.9988274	ACC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr19	12587196	DC1640tail	autochthonous	sgMsh2	12587196	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	182	42	13	0.30952381	exonic	Fam111a	nonsynonymous SNV	"Fam111a:NM_001346545:exon3:c.G308C:p.G103A,Fam111a:NM_026640:exon4:c.G440C:p.G147A"	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	2	1	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr19	13365247	DC1640tail	autochthonous	sgMsh2	13365247	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.186	191	0	0	NA	exonic	Olfr1467	frameshift insertion	Olfr1467:NM_146691:exon1:c.619dupT:p.A209Cfs*45	19qA	chr19-3600535-60850867	4	2	2	0.769	4.12199525	NA	1	0.996997551	NA	NA	TAT	frameshift	T	5	TTTTT	1
DC1640T8	chr2	11226969	DC1640tail	autochthonous	sgMsh2	11226969	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.112	60	1	0	0	exonic	Prkcq	nonsynonymous SNV	Prkcq:NM_008859:exon2:c.A102C:p.K34N	2qA1	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.600342611	2	0.9425286	AAG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr2	60672695	DC1640tail	autochthonous	sgMsh2	60672695	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	37	33	5	0.151515152	exonic	Itgb6	synonymous SNV	"Itgb6:NM_021359:exon2:c.T78C:p.G26G,Itgb6:NM_001159564:exon5:c.T78C:p.G26G"	2qC1.2	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.589622207	2	0.850974	CAC	synonymous	NA	NA	NA	NA
DC1640T8	chr2	76745798	DC1640tail	autochthonous	sgMsh2	76745798	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	219	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.C49769T:p.A16590V,Ttn:NM_011652:exon275:c.C69512T:p.A23171V,Ttn:NM_001385708:exon312:c.C75344T:p.A25115V"	2qC3	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.391294738	2	0.9268401	TGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr2	76889146	DC1640tail	autochthonous	sgMsh2	76889146	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	188	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon75:c.T18806C:p.I6269T,Ttn:NM_001385708:exon77:c.T21863C:p.I7288T"	2qC3	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.310891709	3	0.954247	GAT	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr2	82257663	DC1640tail	autochthonous	sgMsh2	82257663	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.G1835T:p.G612V	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	1	1	0.9999994	GGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr2	88034599	DC1640tail	autochthonous	sgMsh2	88034599	-	A	Insertion	Mutect2;Vardict	2	0.072	104	0	0	NA	exonic	Olfr73	frameshift insertion	Olfr73:NM_054090:exon1:c.538dupT:p.C180Lfs*1	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.385934536	NA	NA	ACA	frameshift	A	5	AAAAA	1
DC1640T8	chr2	88124041	DC1640tail	autochthonous	sgMsh2	88124041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	402	0	0	NA	exonic	Olfr1166	synonymous SNV	Olfr1166:NM_146650:exon1:c.T943C:p.L315L	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.873712907	1	1	AAG	synonymous	NA	NA	NA	NA
DC1640T8	chr2	88185053	DC1640tail	autochthonous	sgMsh2	88185053	T	C	SNV	Mutect2;MuSe;Vardict	3	0.091	451	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.T175C:p.F59L	2qD	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.487778372	2	3.95E-09	CTT	nonsynonymous	T	5	TTTTT	NA
DC1640T8	chr2	121049174	DC1640tail	autochthonous	sgMsh2	121049175	CT	-	Deletion	Strelka2;Vardict	2	0.0596	151	1	0	0	exonic	Tgm5	frameshift deletion	"Tgm5:NM_001362724:exon10:c.677_678del:p.E226Gfs*38,Tgm5:NM_028799:exon10:c.1379_1380del:p.E460Gfs*38"	2qE5	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.319468032	NA	NA	CCT	frameshift	CT	10	CTCTCTCTCT	-2
DC1640T8	chr2	152093506	DC1640tail	autochthonous	sgMsh2	152093506	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.114	38	0	0	NA	exonic	Scrt2	nonsynonymous SNV	Scrt2:NM_001160410:exon2:c.A578G:p.K193R	2qG3	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.611063015	2	0.810402	AAG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr2	153399446	DC1640tail	autochthonous	sgMsh2	153399446	G	-	Deletion	Strelka2;Vardict	2	0.122	82	53	5	0.094339623	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-3197193-181684255	4	2	2	0.769	4.12199525	NA	1	0.65394463	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
DC1640T8	chr3	89334320	DC1640tail	autochthonous	sgMsh2	89334320	-	AGC	Insertion	Strelka2;Vardict	2	0.1176	68	49	0	0	exonic	Efna4	nonframeshift insertion	Efna4:NM_007910:exon4:c.590_591insGCT:p.L197_P198insL	3qF1	chr3-5397880-159911278	4	2	2	0.769	4.12199525	NA	1	0.630359742	NA	NA	GGA	inframe	AGC	16	AGCAGCAGCAGCAGCA	3
DC1640T8	chr3	100472711	DC1640tail	autochthonous	sgMsh2	100472711	C	-	Deletion	Mutect2;Vardict	2	0.079	81	4	0	0	exonic	Tent5c	frameshift deletion	Tent5c:NM_001142952:exon2:c.728delG:p.G243Vfs*65	3qF2.2	chr3-5397880-159911278	4	2	2	0.769	4.12199525	NA	1	0.423455949	NA	NA	ACC	frameshift	C	5	CCCCC	-1
DC1640T8	chr3	104953122	DC1640tail	autochthonous	sgMsh2	104953122	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	85	0	0	NA	exonic	Wnt2b	synonymous SNV	Wnt2b:NM_009520:exon3:c.C468T:p.C156C	3qF2.2	chr3-5397880-159911278	4	2	2	0.769	4.12199525	NA	2	1	1	0.999998	TGC	synonymous	NA	NA	NA	NA
DC1640T8	chr3	106734629	DC1640tail	autochthonous	sgMsh2	106734629	A	-	Deletion	Strelka2;Vardict	2	0.0769	117	63	0	0	exonic	Lrif1	frameshift deletion	"Lrif1:NM_001039478:exon2:c.320delA:p.K109Nfs*12,Lrif1:NM_028081:exon2:c.260delA:p.K89Nfs*12,Lrif1:NM_001039488:exon3:c.1814delA:p.K607Nfs*12,Lrif1:NM_001286685:exon4:c.260delA:p.K89Nfs*12"	3qF2.3	chr3-5397880-159911278	4	2	2	0.769	4.12199525	NA	1	0.412199525	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
DC1640T8	chr4	89276890	DC1640tail	autochthonous	sgMsh2	89276890	C	-	Deletion	Mutect2;Vardict	2	0.07	58	707	61	0.086280057	exonic	Cdkn2a	frameshift deletion	"Cdkn2a:NM_001040654:exon2:c.222delG:p.H75Tfs*103,Cdkn2a:NM_009877:exon2:c.286delG:p.A96Hfs*94"	4qC4	chr4-3973093-150431620	4	2	2	0.769	4.12199525	NA	1	0.375214132	NA	NA	GCA	frameshift	NA	NA	NA	-1
DC1640T8	chr5	37242236	DC1640tail	autochthonous	sgMsh2	37242236	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	41	0	0	NA	exonic	Crmp1	nonsynonymous SNV	Crmp1:NM_001136058:exon1:c.A92C:p.K31T	5qB3	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	1	0.686105841	2	0.5224994	AAG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr5	121646850	DC1640tail	autochthonous	sgMsh2	121646850	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	34	22	6	0.272727273	exonic	Acad10	synonymous SNV	Acad10:NM_028037:exon6:c.C702T:p.P234P	5qF	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	2	1	1	0.9954042	CGG	synonymous	NA	NA	NA	NA
DC1640T8	chr5	137302614	DC1640tail	autochthonous	sgMsh2	137302614	C	-	Deletion	Strelka2;Vardict	2	0.1549	71	44	1	0.022727273	exonic	Srrt	frameshift deletion	"Srrt:NM_001109909:exon4:c.311delG:p.G104Vfs*44,Srrt:NM_001109910:exon4:c.311delG:p.G104Vfs*44,Srrt:NM_001359602:exon4:c.311delG:p.G104Vfs*44,Srrt:NM_031405:exon4:c.311delG:p.G104Vfs*44"	5qG2	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	1	0.830295272	NA	NA	ACC	frameshift	C	14	CCCCCACCCCCCCC	-1
DC1640T8	chr5	137779711	DC1640tail	autochthonous	sgMsh2	137779714	GAGG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	27	33	5	0.151515152	exonic	Ppp1r35	frameshift deletion	Ppp1r35:NM_027242:exon3:c.558_561del:p.E188Sfs*13	5qG2	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	2	1	NA	NA	TGA	frameshift	NA	NA	NA	-4
DC1640T8	chr5	144556260	DC1640tail	autochthonous	sgMsh2	144556260	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	0	0	NA	exonic	Nptx2	nonsynonymous SNV	Nptx2:NM_016789:exon5:c.A1156T:p.I386F	5qG2	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	1	1	1	0.9999983	GAT	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr5	145151354	DC1640tail	autochthonous	sgMsh2	145151354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	126	40	11	0.275	exonic	Ptcd1	nonsynonymous SNV	Ptcd1:NM_133735:exon8:c.G1846A:p.V616I	5qG2	chr5-3582301-150548378	4	2	2	0.769	4.12199525	NA	1	1	1	4.85E-09	ACG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr6	29501226	DC1640tail	autochthonous	sgMsh2	29501226	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	114	0	0	NA	exonic	Kcp	synonymous SNV	Kcp:NM_001029985:exon8:c.C819T:p.D273D	6qA3.3	chr6-3994124-149036229	6	4	2	0.769	4.12199525	NA	2	1	1	2.49E-08	GGT	synonymous	NA	NA	NA	NA
DC1640T8	chr6	41619761	DC1640tail	autochthonous	sgMsh2	41619761	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	80	4	1	0.25	exonic	Ephb6	nonsynonymous SNV	"Ephb6:NM_001146351:exon16:c.A2741G:p.K914R,Ephb6:NM_007680:exon16:c.A2741G:p.K914R"	6qB2.1	chr6-3994124-149036229	6	4	2	0.769	4.12199525	NA	1	0.434176353	2	0.9389877	AAG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr6	85462162	DC1640tail	autochthonous	sgMsh2	85462162	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	74	663	73	0.110105581	exonic	Cct7	nonsynonymous SNV	Cct7:NM_007638:exon6:c.A583T:p.I195F	6qC3	chr6-3994124-149036229	6	4	2	0.769	4.12199525	NA	1	0.911234321	1	0.9997046	GAT	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr6	113280720	DC1640tail	autochthonous	sgMsh2	113280720	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.1	61	42	3	0.071428571	exonic	Mtmr14	synonymous SNV	"Mtmr14:NM_001362185:exon17:c.C1173T:p.I391I,Mtmr14:NM_001362182:exon18:c.C1725T:p.I575I,Mtmr14:NM_001362183:exon18:c.C1521T:p.I507I,Mtmr14:NM_026849:exon19:c.C1881T:p.I627I"	6qE3	chr6-3994124-149036229	6	4	2	0.769	4.12199525	NA	1	0.536020189	2	0.9817763	TCG	synonymous	G	5	GGGGG	NA
DC1640T8	chr7	45800961	DC1640tail	autochthonous	sgMsh2	45800961	C	-	Deletion	Strelka2;Vardict	2	0.2083	24	1	0	0	exonic	Lmtk3	frameshift deletion	"Lmtk3:NM_001290990:exon14:c.4170delC:p.L1393Cfs*60,Lmtk3:NM_001005511:exon15:c.4170delC:p.L1393Cfs*60"	7qB3	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	1	NA	NA	GCC	frameshift	C	8	CCCCCCCC	-1
DC1640T8	chr7	72127253	DC1640tail	autochthonous	sgMsh2	72127253	A	-	Deletion	Mutect2;Vardict	2	0.078	108	0	0	NA	exonic	Mctp2	frameshift deletion	Mctp2:NM_001024703:exon18:c.2093delT:p.L698Wfs*10	7qD1	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.418095747	NA	NA	CAA	frameshift	A	5	AAAAA	-1
DC1640T8	chr7	103893278	DC1640tail	autochthonous	sgMsh2	103893278	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	309	0	0	NA	exonic	Olfr64	nonsynonymous SNV	Olfr64:NM_013617:exon1:c.G456T:p.L152F	7qE3	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.412735545	2	0.9961031	ACA	nonsynonymous	A	5	AAAAA	NA
DC1640T8	chr7	106752839	DC1640tail	autochthonous	sgMsh2	106752839	G	-	Deletion	Mutect2;Vardict	2	0.03	350	0	0	NA	exonic	Olfr698	frameshift deletion	Olfr698:NM_146602:exon1:c.548delC:p.P183Hfs*2	7qE3	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.160806057	NA	NA	TGG	frameshift	G	5	GGGGG	-1
DC1640T8	chr7	132876717	DC1640tail	autochthonous	sgMsh2	132876717	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	279	58	2	0.034482759	exonic	Abraxas2	nonsynonymous SNV	Abraxas2:NM_198017:exon6:c.G605A:p.G202D	7qF3	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.450256958	2	0.9998494	GGG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr7	140419239	DC1640tail	autochthonous	sgMsh2	140419239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	295	0	0	NA	exonic	Olfr532	nonsynonymous SNV	Olfr532:NM_147026:exon1:c.T533C:p.L178S	7qF4	chr7-4692757-142893198	4	3	1	0.769	4.12199525	NA	1	0.471697766	2	0.9999898	TAA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr8	72885721	DC1640tail	autochthonous	sgMsh2	72885721	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	137	62	2	0.032258065	exonic	Large1	nonsynonymous SNV	"Large1:NM_010687:exon8:c.G975T:p.M325I,Large1:NM_001317391:exon9:c.G975T:p.M325I"	8qB3.3	chr8-3624720-126969919	4	2	2	0.769	4.12199525	NA	1	0.39665494	2	0.09994619	CCA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr8	84970259	DC1640tail	autochthonous	sgMsh2	84970259	G	A	SNV	Mutect2;Vardict	2	0.026	222	789	0	0	exonic	Prdx2	synonymous SNV	"Prdx2:NM_001317385:exon2:c.G18A:p.A6A,Prdx2:NM_011563:exon2:c.G18A:p.A6A"	8qC3	chr8-3624720-126969919	4	2	2	0.769	4.12199525	NA	1	0.139365249	3	3.38E-08	CGC	synonymous	NA	NA	NA	NA
DC1640T8	chr8	108947388	DC1640tail	autochthonous	sgMsh2	108947388	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	39	19	4	0.210526316	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.C5069T:p.A1690V	8qD3	chr8-3624720-126969919	4	2	2	0.769	4.12199525	NA	1	1	1	0.9978472	GCG	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr8	111041482	DC1640tail	autochthonous	sgMsh2	111041482	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	105	165	8	0.048484848	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon5:c.G484A:p.D162N	8qE1	chr8-3624720-126969919	4	2	2	0.769	4.12199525	NA	1	0.289450902	3	0.8890602	GGA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr9	21034611	DC1640tail	autochthonous	sgMsh2	21034611	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	71	1	0	0	exonic	Icam5	synonymous SNV	Icam5:NM_008319:exon4:c.G738A:p.P246P	9qA3	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	0.337692719	2	0.5267685	CGG	synonymous	NA	NA	NA	NA
DC1640T8	chr9	30961748	DC1640tail	autochthonous	sgMsh2	30961748	G	A	SNV	Mutect2;Vardict	2	0.047	114	3	0	0	exonic	Adamts8	nonsynonymous SNV	"Adamts8:NM_001326292:exon8:c.G1093A:p.A365T,Adamts8:NM_013906:exon9:c.G2248A:p.A750T"	9qA4	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	0.251929489	3	0.9792324	GGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chr9	44108657	DC1640tail	autochthonous	sgMsh2	44108657	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	90	41	0	0	exonic	C1qtnf5	frameshift deletion	"C1qtnf5:NM_001040631:exon3:c.577delG:p.G194Vfs*3,C1qtnf5:NM_001040632:exon3:c.577delG:p.G194Vfs*3,C1qtnf5:NM_001190319:exon3:c.577delG:p.G194Vfs*3,C1qtnf5:NM_001190313:exon14:c.577delG:p.G194Vfs*3,C1qtnf5:NM_145613:exon14:c.577delG:p.G194Vfs*3"	9qA5.1	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	0.761148668	NA	NA	AGG	frameshift	G	5	GGGGG	-1
DC1640T8	chr9	59871809	DC1640tail	autochthonous	sgMsh2	59871809	A	-	Deletion	Strelka2;Vardict	2	0.188	133	31	4	0.129032258	exonic	Myo9a	frameshift deletion	Myo9a:NM_173018:exon25:c.4847delA:p.G1619Efs*91	9qB	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
DC1640T8	chr9	80136750	DC1640tail	autochthonous	sgMsh2	80136750	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	125	175	21	0.12	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
DC1640T8	chr9	121742769	DC1640tail	autochthonous	sgMsh2	121742769	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	65	50	1	0.02	exonic	Nktr	nonsynonymous SNV	Nktr:NM_010918:exon9:c.G755A:p.R252H	9qF4	chr9-3347922-124108155	4	2	2	0.769	4.12199525	NA	1	0.477057968	2	0.9664495	CGC	nonsynonymous	NA	NA	NA	NA
DC1640T8	chrX	74337972	DC1640tail	autochthonous	sgMsh2	74337972	G	A	SNV	Mutect2;Vardict	2	0.058	114	6	0	0	exonic	Plxna3	nonsynonymous SNV	"Plxna3:NM_001358129:exon20:c.G3275A:p.G1092E,Plxna3:NM_008883:exon20:c.G3506A:p.G1169E"	XqA7.3	NA	NA	NA	NA	0.769	4.12199525	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
DC1640T8	chrX	107677776	DC1640tail	autochthonous	sgMsh2	107677776	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	76	0	0	NA	exonic	Tbx22	frameshift deletion	"Tbx22:NM_145224:exon3:c.346delA:p.R116Dfs*10,Tbx22:NM_181319:exon3:c.388delA:p.R130Dfs*10"	XqD	NA	NA	NA	NA	0.769	4.12199525	NA	NA	NA	NA	NA	CAG	frameshift	NA	NA	NA	-1
DC1640T8	chrX	112615376	DC1640tail	autochthonous	sgMsh2	112615376	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	261	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_001381900:exon3:c.C563T:p.T188M,Zfp711:NM_177747:exon3:c.C563T:p.T188M,Zfp711:NM_001381898:exon4:c.C563T:p.T188M,Zfp711:NM_001381899:exon4:c.C563T:p.T188M"	XqE1	NA	NA	NA	NA	0.769	4.12199525	NA	NA	NA	NA	NA	ACG	nonsynonymous	A	5	AAAAA	NA
M1	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	33	147	29	0.197278912	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	TGG	synonymous	NA	NA	NA	NA
M1	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	52	97	30	0.309278351	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	42	92	10	0.108695652	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr1	9546354	12A2p6	cell line	sgMsh2	9546354	C	T	SNV	Mutect2;Vardict	2	0.077	142	130	0	0	exonic	Rrs1	synonymous SNV	Rrs1:NM_021511:exon1:c.C831T:p.S277S	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.349749432	3	0.9995907	GCA	synonymous	NA	NA	NA	NA
M1	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	143	8	2	0.25	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9954034	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	214	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999965	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M1	chr1	17004453	12A2p6	cell line	sgMsh2	17004453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	70	15	4	0.266666667	exonic	Jph1	nonsynonymous SNV	Jph1:NM_020604:exon4:c.C1340T:p.P447L	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9751018	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr1	18251232	12A2p6	cell line	sgMsh2	18251232	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	96	0	0	NA	exonic	Defb41	nonsynonymous SNV	Defb41:NM_183124:exon2:c.T157C:p.C53R	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	19231030	12A2p6	cell line	sgMsh2	19231030	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	65	0	0	NA	exonic	Tfap2b	nonsynonymous SNV	"Tfap2b:NM_001025305:exon6:c.G904T:p.A302S,Tfap2b:NM_001286340:exon6:c.G958T:p.A320S,Tfap2b:NM_009334:exon6:c.G958T:p.A320S"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	45	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9779358	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	61	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.8949115	TGC	synonymous	NA	NA	NA	NA
M1	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	123	86	22	0.255813953	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	24296786	12A2p6	cell line	sgMsh2	24296786	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	145	0	0	NA	exonic	Col19a1	stopgain	Col19a1:NM_007733:exon41:c.G2578T:p.G860X	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	135	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9675056	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr1	26687303	12A2p6	cell line	sgMsh2	26687303	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.05	400	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.A124T:p.I42L	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.227110021	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr1	26687421	12A2p6	cell line	sgMsh2	26687421	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	326	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G6T:p.E2D	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.240736622	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	28777857	12A2p6	cell line	sgMsh2	28777857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A1093T:p.N365Y	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	31223388	12A2p6	cell line	sgMsh2	31223388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	320	0	0	NA	exonic	Dnaaf6	synonymous SNV	Dnaaf6:NM_029062:exon1:c.A450G:p.K150K	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.85E-08	AAA	synonymous	NA	NA	NA	NA
M1	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	40	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	205	27	0	0	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	0.854796	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	34194112	12A2p6	cell line	sgMsh2	34194112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	104	27	4	0.148148148	exonic	Dst	synonymous SNV	"Dst:NM_134448:exon38:c.T10194C:p.H3398H,Dst:NM_001276764:exon41:c.T10728C:p.H3576H"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	ATG	synonymous	NA	NA	NA	NA
M1	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	142	113	23	0.203539823	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998707	TAG	synonymous	NA	NA	NA	NA
M1	chr1	36837966	12A2p6	cell line	sgMsh2	36837966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	88	90	20	0.222222222	exonic	Tmem131	nonsynonymous SNV	Tmem131:NM_018872:exon8:c.A791C:p.K264T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.134	37	17	1	0.058823529	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.008220424	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr1	37429918	12A2p6	cell line	sgMsh2	37429918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	44	76	13	0.171052632	exonic	Coa5	nonsynonymous SNV	Coa5:NM_198006:exon1:c.T50C:p.V17A	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	1	0.6725477	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	48	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr1	39990170	12A2p6	cell line	sgMsh2	39990170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	40	179	40	0.223463687	exonic	Map4k4	synonymous SNV	"Map4k4:NM_001252200:exon12:c.G1104A:p.E368E,Map4k4:NM_001252201:exon12:c.G1104A:p.E368E,Map4k4:NM_001252202:exon12:c.G1104A:p.E368E,Map4k4:NM_008696:exon12:c.G1104A:p.E368E"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	AGG	synonymous	NA	NA	NA	NA
M1	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	115	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	165	137	28	0.204379562	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9982699	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	46123770	12A2p6	cell line	sgMsh2	46123770	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	344	3	1	0.333333333	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon11:c.A1143C:p.Q381H	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.26E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	31	59	3	0.050847458	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	174	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999739	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	202	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999936	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	198	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	126	541	132	0.243992606	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	106	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CAG	synonymous	NA	NA	NA	NA
M1	chr1	58247248	12A2p6	cell line	sgMsh2	58247248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	0	0	NA	exonic	Aox4	nonsynonymous SNV	Aox4:NM_023631:exon19:c.A2038G:p.T680A	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	58	13	3	0.230769231	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	ATG	synonymous	NA	NA	NA	NA
M1	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	70	351	71	0.202279202	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.549606251	2	0.9631335	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	59199042	12A2p6	cell line	sgMsh2	59199042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	69	55	12	0.218181818	exonic	Als2	nonsynonymous SNV	"Als2:NM_001159948:exon10:c.A2130G:p.I710M,Als2:NM_028717:exon10:c.A2130G:p.I710M,Als2:NM_146109:exon10:c.A2130G:p.I710M"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	107	98	28	0.285714286	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	106	55	15	0.272727273	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9773062	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	106	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.998387	CTG	nonsynonymous	G	5	GGGGG	NA
M1	chr1	66673989	12A2p6	cell line	sgMsh2	66673989	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	74	0	0	NA	exonic	Unc80	synonymous SNV	"Unc80:NM_001368825:exon54:c.T8070G:p.A2690A,Unc80:NM_001368824:exon55:c.T8310G:p.A2770A,Unc80:NM_175510:exon55:c.T8265G:p.A2755A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CTT	synonymous	NA	NA	NA	NA
M1	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	77	2	0	0	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	84	33	13	0.393939394	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9962727	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr1	74394906	12A2p6	cell line	sgMsh2	74394906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	112	153	0	0	exonic	Ctdsp1	nonsynonymous SNV	Ctdsp1:NM_153088:exon6:c.T541C:p.C181R	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	0.7123276	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	109	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9877989	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	104	63	11	0.174603175	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	149	22	6	0.272727273	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	1	0	0	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	74748821	12A2p6	cell line	sgMsh2	74748821	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.187	15	2	0	0	exonic	Prkag3	synonymous SNV	Prkag3:NM_153744:exon1:c.T30G:p.P10P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.000940347	CAG	synonymous	NA	NA	NA	NA
M1	chr1	74919233	12A2p6	cell line	sgMsh2	74919233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	108	0	0	NA	exonic	Cfap65	nonsynonymous SNV	Cfap65:NM_001039495:exon15:c.T2714C:p.V905A	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	88	198	36	0.181818182	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	TAG	synonymous	NA	NA	NA	NA
M1	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	42	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	81269247	12A2p6	cell line	sgMsh2	81269247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	74	0	0	NA	exonic	Nyap2	nonsynonymous SNV	"Nyap2:NM_001356397:exon5:c.A1813G:p.S605G,Nyap2:NM_001356400:exon5:c.A1813G:p.S605G,Nyap2:NM_001356398:exon6:c.A1909G:p.S637G,Nyap2:NM_001356399:exon6:c.A1813G:p.S605G"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	112	193	4	0.020725389	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9517467	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	84	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.09506293	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	109	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	93	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.990391	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	88212803	12A2p6	cell line	sgMsh2	88212803	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	556	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.A802G:p.R268G	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.231652221	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	274	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.127181612	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	88255241	12A2p6	cell line	sgMsh2	88255241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	187	1	0	0	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3809C:p.L1270P	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.236194422	3	1.59E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	90144865	12A2p6	cell line	sgMsh2	90144865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	103	0	0	NA	exonic	Iqca	nonsynonymous SNV	"Iqca:NM_001368722:exon2:c.T292C:p.F98L,Iqca:NM_029122:exon2:c.T292C:p.F98L"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9320096	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	27	1	0	0	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M1	chr1	91368438	12A2p6	cell line	sgMsh2	91368438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	112	5	1	0.2	exonic	Erfe	nonsynonymous SNV	Erfe:NM_173395:exon2:c.A242G:p.K81R	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9952903	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	92858333	12A2p6	cell line	sgMsh2	92858333	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	9	20	5	0.25	exonic	Gpc1	nonsynonymous SNV	Gpc1:NM_016696:exon9:c.T1443G:p.S481R	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.000981839	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	77	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	166	83	0	0	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999611	AAG	synonymous	NA	NA	NA	NA
M1	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	113	1	0	0	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9981338	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	100	25	11	0.44	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	93689190	12A2p6	cell line	sgMsh2	93689190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	37	39	10	0.256410256	exonic	Bok	nonsynonymous SNV	Bok:NM_016778:exon3:c.A257G:p.Y86C	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.167	84	115	30	0.260869565	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	1	0.5352286	TAG	synonymous	NA	NA	NA	NA
M1	chr1	96832013	12A2p6	cell line	sgMsh2	96832013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	61	0	0	NA	exonic	Slco4c1	synonymous SNV	Slco4c1:NM_172658:exon9:c.A1593G:p.L531L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	TTA	synonymous	NA	NA	NA	NA
M1	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	71	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr1	105808215	12A2p6	cell line	sgMsh2	105808215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	131	3	0	0	exonic	Tnfrsf11a	nonsynonymous SNV	Tnfrsf11a:NM_009399:exon2:c.T151C:p.C51R	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.208	224	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	NA	NA	CAT	frameshift	T	5	TTTTT	1
M1	chr1	116412208	12A2p6	cell line	sgMsh2	116412208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	103	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon14:c.A2196G:p.R732R,Cntnap5a:NM_001371013:exon14:c.A2199G:p.R733R"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9981641	GAC	synonymous	NA	NA	NA	NA
M1	chr1	116442254	12A2p6	cell line	sgMsh2	116442254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	173	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon17:c.A2600G:p.Y867C,Cntnap5a:NM_001371013:exon17:c.A2603G:p.Y868C"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	66	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.918951	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	151	39	15	0.384615385	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	GTT	synonymous	NA	NA	NA	NA
M1	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	93	38	13	0.342105263	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.248	159	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999448	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	70	19	0.271428571	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9935697	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr1	128272844	12A2p6	cell line	sgMsh2	128272844	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	62	128	3	0.0234375	exonic	Ubxn4	frameshift deletion	"Ubxn4:NM_001356529:exon11:c.1074delT:p.S360Hfs*1,Ubxn4:NM_026390:exon11:c.1071delT:p.S359Hfs*1"	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	128	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9785767	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	123	190	37	0.194736842	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	172	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999712	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	196	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999913	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	62	5	1	0.2	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9851978	GTA	synonymous	NA	NA	NA	NA
M1	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	62	66	10	0.151515152	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M1	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	95	44	11	0.25	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	GGC	synonymous	NA	NA	NA	NA
M1	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	151	88	22	0.25	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	CTG	synonymous	NA	NA	NA	NA
M1	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	86	271	62	0.228782288	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	65	21	9	0.428571429	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	30	6	0.2	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr1	133645798	12A2p6	cell line	sgMsh2	133645798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	112	400	81	0.2025	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon4:c.A103G:p.T35A,Zc3h11a:NM_144530:exon4:c.A103G:p.T35A,Zc3h11a:NM_001276767:exon5:c.A103G:p.T35A"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	133688887	12A2p6	cell line	sgMsh2	133688887	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	35	0	0	NA	exonic	Lax1	nonsynonymous SNV	"Lax1:NM_001159649:exon2:c.C20T:p.P7L,Lax1:NM_172842:exon2:c.C20T:p.P7L"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9733549	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.262	143	52	11	0.211538462	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.262	143	52	11	0.211538462	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	175	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	177	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9679073	TAT	synonymous	NA	NA	NA	NA
M1	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	100	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	TTT	synonymous	NA	NA	NA	NA
M1	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	182	44	0.241758242	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr1	150664892	12A2p6	cell line	sgMsh2	150664892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	147	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon56:c.A8665G:p.T2889A	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998993	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	85	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9878174	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	149	250	51	0.204	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.7997956	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr1	152554407	12A2p6	cell line	sgMsh2	152554407	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	71	10	2	0.2	exonic	Rgl1	synonymous SNV	"Rgl1:NM_001346119:exon6:c.C618T:p.N206N,Rgl1:NM_016846:exon6:c.C624T:p.N208N,Rgl1:NM_001346117:exon7:c.C729T:p.N243N,Rgl1:NM_001346118:exon7:c.C729T:p.N243N"	1qG2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	TGT	synonymous	NA	NA	NA	NA
M1	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	173	55	15	0.272727273	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	33	215	55	0.255813953	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9510623	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	190	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999883	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr1	154469095	12A2p6	cell line	sgMsh2	154469095	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	74	0	0	NA	exonic	Cacna1e	synonymous SNV	Cacna1e:NM_009782:exon22:c.G3282T:p.T1094T	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CCG	synonymous	NA	NA	NA	NA
M1	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	AAG	nonsynonymous	A	5	AAAAA	NA
M1	chr1	156017551	12A2p6	cell line	sgMsh2	156017551	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	152	44	7	0.159090909	exonic	Tor1aip1	nonsynonymous SNV	"Tor1aip1:NM_001160018:exon8:c.G849T:p.E283D,Tor1aip1:NM_001160019:exon8:c.G294T:p.E98D"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999216	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr1	156065358	12A2p6	cell line	sgMsh2	156065358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	44	90	20	0.222222222	exonic	Tor1aip2	nonsynonymous SNV	"Tor1aip2:NM_001358626:exon5:c.T1409C:p.M470T,Tor1aip2:NM_001358627:exon6:c.T1409C:p.M470T,Tor1aip2:NM_172843:exon7:c.T1409C:p.M470T"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr1	156622630	12A2p6	cell line	sgMsh2	156622630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	144	43	11	0.255813953	exonic	Abl2	synonymous SNV	"Abl2:NM_001136104:exon3:c.T366C:p.G122G,Abl2:NM_009595:exon3:c.T366C:p.G122G"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.9860618	GTG	synonymous	NA	NA	NA	NA
M1	chr1	158266665	12A2p6	cell line	sgMsh2	158266665	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	36	0	0	NA	exonic	Brinp2	stopgain	Brinp2:NM_207583:exon4:c.G466T:p.E156X	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	181	1	0	0	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9999197	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	161241748	12A2p6	cell line	sgMsh2	161241748	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	179	1112	4	0.003597122	exonic	Prdx6	frameshift deletion	"Prdx6:NM_007453:exon5:c.648delA:p.K216Nfs*45,Prdx6:NM_001303408:exon6:c.576delA:p.K192Nfs*45"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	23	50	11	0.22	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	AAG	synonymous	NA	NA	NA	NA
M1	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	174	42	5	0.119047619	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999739	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	190	31	8	0.258064516	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999883	CCA	synonymous	NA	NA	NA	NA
M1	chr1	164438425	12A2p6	cell line	sgMsh2	164438425	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	76	47	9	0.191489362	exonic	Atp1b1	synonymous SNV	Atp1b1:NM_009721:exon6:c.C766T:p.L256L	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.9093991	AGG	synonymous	NA	NA	NA	NA
M1	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	166099971	12A2p6	cell line	sgMsh2	166099971	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	106	0	0	NA	exonic	Dusp27	frameshift deletion	"Dusp27:NM_001033344:exon6:c.2071delC:p.L691Cfs*47,Dusp27:NM_001160049:exon6:c.2071delC:p.L691Cfs*47"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	21	8	0.380952381	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	87	3	0	0	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	55	197	46	0.233502538	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	CTG	synonymous	NA	NA	NA	NA
M1	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	72	246	64	0.260162602	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.09244225	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	122	164	38	0.231707317	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	ATA	synonymous	NA	NA	NA	NA
M1	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	133	66	14	0.212121212	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	172279394	12A2p6	cell line	sgMsh2	172279394	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	109	0	0	NA	exonic	Atp1a2	frameshift deletion	Atp1a2:NM_178405:exon17:c.2358delC:p.F787Sfs*15	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	63	85	27	0.317647059	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.6065281	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	43	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.6476683	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	172957075	12A2p6	cell line	sgMsh2	172957075	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	202	0	0	NA	exonic	Olfr16	synonymous SNV	Olfr16:NM_008763:exon1:c.C279A:p.S93S	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999936	CCT	synonymous	NA	NA	NA	NA
M1	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	306	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.62E-08	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	247	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr1	173225553	12A2p6	cell line	sgMsh2	173225553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	123	0	0	NA	exonic	Fcer1a	synonymous SNV	Fcer1a:NM_010184:exon3:c.T75C:p.T25T	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.7574862	CAG	synonymous	NA	NA	NA	NA
M1	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	167	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.440593441	3	0.09316066	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr1	173473804	12A2p6	cell line	sgMsh2	173473804	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	0	0	NA	exonic	Ifi206	synonymous SNV	"Ifi206:NM_001372436:exon6:c.T2307C:p.N769N,Ifi206:NM_001372437:exon6:c.T2307C:p.N769N"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	CAT	synonymous	NA	NA	NA	NA
M1	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	234	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999987	ATG	synonymous	NA	NA	NA	NA
M1	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	186	60	0	0	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.590486054	2	0.9999599	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr1	174028243	12A2p6	cell line	sgMsh2	174028243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	132	0	0	NA	exonic	Ifi205	nonsynonymous SNV	Ifi205:NM_172648:exon2:c.A220G:p.T74A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	124	160	33	0.20625	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr1	176742557	12A2p6	cell line	sgMsh2	176742557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	60	123	23	0.18699187	exonic	Cep170	nonsynonymous SNV	"Cep170:NM_001368872:exon13:c.A3529G:p.T1177A,Cep170:NM_001368873:exon14:c.A3679G:p.T1227A,Cep170:NM_001099637:exon15:c.A3973G:p.T1325A"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	66	27	4	0.148148148	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	ATA	synonymous	NA	NA	NA	NA
M1	chr1	179592691	12A2p6	cell line	sgMsh2	179592691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	72	12	4	0.333333333	exonic	Cnst	nonsynonymous SNV	Cnst:NM_146105:exon3:c.C386T:p.A129V	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	91	126	36	0.285714286	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9955855	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	161	33	0.204968944	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.2143	98	79	2	0.025316456	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97339355	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	53	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.8133413	CCT	synonymous	NA	NA	NA	NA
M1	chr1	185278355	12A2p6	cell line	sgMsh2	185278355	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	52	104	25	0.240384615	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon31:c.T3541A:p.F1181I	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr1	185363208	12A2p6	cell line	sgMsh2	185363208	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.157	23	240	68	0.283333333	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_001357474:exon1:c.T11A:p.L4Q,Eprs:NM_029735:exon1:c.T11A:p.L4Q"	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	1	0.7439197	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr1	186968871	12A2p6	cell line	sgMsh2	186968871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	212	0	0	NA	exonic	D1Pas1	synonymous SNV	D1Pas1:NM_033077:exon1:c.A996G:p.R332R	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9465104	GAG	synonymous	NA	NA	NA	NA
M1	chr1	186969469	12A2p6	cell line	sgMsh2	186969469	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	180	0	0	NA	exonic	D1Pas1	nonsynonymous SNV	D1Pas1:NM_033077:exon1:c.G1594T:p.G532C	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999807	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	120	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.997326	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2037	54	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.925246225	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M1	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	114	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	70	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	49	124	31	0.25	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	4354926	12A2p6	cell line	sgMsh2	4354926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	136	3	0	0	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.T2050C:p.S684P	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9945407	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	4407868	12A2p6	cell line	sgMsh2	4407868	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.244	258	11	2	0.181818182	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon11:c.A1140C:p.R380S,Rmnd1:NM_001358796:exon12:c.A1140C:p.R380S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999996	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	120	47	10	0.212765957	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	160	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999475	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	169	45	9	0.2	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999665	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	10719563	12A2p6	cell line	sgMsh2	10719563	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	135	0	0	NA	exonic	Grm1	nonsynonymous SNV	"Grm1:NM_001114333:exon8:c.A2320T:p.T774S,Grm1:NM_016976:exon8:c.A2320T:p.T774S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	136	25	3	0.12	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.5412522	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	155	58	14	0.24137931	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999325	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	98	13	3	0.230769231	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988319	CGC	synonymous	NA	NA	NA	NA
M1	chr10	13125028	12A2p6	cell line	sgMsh2	13125028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	93	12	0	0	exonic	Plagl1	synonymous SNV	"Plagl1:NM_009538:exon5:c.C12T:p.F4F,Plagl1:NM_001364644:exon6:c.C12T:p.F4F,Plagl1:NM_001364643:exon7:c.C12T:p.F4F,Plagl1:NM_001364645:exon7:c.C12T:p.F4F"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	TCC	synonymous	NA	NA	NA	NA
M1	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	82	23	7	0.304347826	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr10	14128134	12A2p6	cell line	sgMsh2	14128134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	106	23	5	0.217391304	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A475G:p.N159D,Hivep2:NM_001358782:exon5:c.A475G:p.N159D,Hivep2:NM_001358783:exon8:c.A475G:p.N159D"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr10	14130518	12A2p6	cell line	sgMsh2	14130518	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	108	32	10	0.3125	exonic	Hivep2	synonymous SNV	"Hivep2:NM_010437:exon4:c.C2859T:p.T953T,Hivep2:NM_001358782:exon5:c.C2859T:p.T953T,Hivep2:NM_001358783:exon8:c.C2859T:p.T953T"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	CCG	synonymous	NA	NA	NA	NA
M1	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	76	26	6	0.230769231	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	17723946	12A2p6	cell line	sgMsh2	17723946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	41	299	69	0.230769231	exonic	Cited2	nonsynonymous SNV	Cited2:NM_010828:exon2:c.A1G:p.M1V	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	17723974	12A2p6	cell line	sgMsh2	17723974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	52	253	47	0.185770751	exonic	Cited2	nonsynonymous SNV	Cited2:NM_010828:exon2:c.A29G:p.H10R	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	17915097	12A2p6	cell line	sgMsh2	17915097	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	115	78	26	0.333333333	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.C1210T:p.R404W	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	78	25	9	0.36	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.549606251	2	0.9756449	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	107	16	5	0.3125	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	CAC	synonymous	NA	NA	NA	NA
M1	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	44	4	2	0.5	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.587	55	3	1	0.333333333	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr10	20959922	12A2p6	cell line	sgMsh2	20959922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	101	9	1	0.111111111	exonic	Ahi1	synonymous SNV	"Ahi1:NM_001358561:exon2:c.A153G:p.E51E,Ahi1:NM_026203:exon2:c.A153G:p.E51E"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.6140461	AAG	synonymous	NA	NA	NA	NA
M1	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	63	710	184	0.25915493	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr10	23993392	12A2p6	cell line	sgMsh2	23993392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	288	0	0	NA	exonic	Taar7a	synonymous SNV	Taar7a:NM_001010829:exon1:c.T90C:p.Y30Y	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
M1	chr10	24244309	12A2p6	cell line	sgMsh2	24244309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	122	4	0	0	exonic	Moxd1	nonsynonymous SNV	Moxd1:NM_021509:exon2:c.A334G:p.M112V	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9995018	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	24820607	12A2p6	cell line	sgMsh2	24820607	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	107	11	0	0	exonic	Enpp3	synonymous SNV	Enpp3:NM_134005:exon5:c.C429A:p.A143A	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	AGG	synonymous	NA	NA	NA	NA
M1	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	79	238	70	0.294117647	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.7047367	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	94	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	103	25	1	0.04	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr10	34297972	12A2p6	cell line	sgMsh2	34297972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	28	1	0	0	exonic	Tspyl4	synonymous SNV	Tspyl4:NM_030203:exon1:c.T459C:p.S153S	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.962591	CTG	synonymous	NA	NA	NA	NA
M1	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	134	45	11	0.244444444	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	CCT	synonymous	NA	NA	NA	NA
M1	chr10	40289423	12A2p6	cell line	sgMsh2	40289423	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	133	6	2	0.333333333	exonic	Amd1;Amd2	nonsynonymous SNV	"Amd2:NM_007444:exon8:c.G911A:p.G304D,Amd1:NM_009665:exon8:c.G911A:p.G304D"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr10	41070568	12A2p6	cell line	sgMsh2	41070568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	66	0	0	NA	exonic	Gpr6	synonymous SNV	Gpr6:NM_199058:exon2:c.T1017C:p.R339R	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CAC	synonymous	NA	NA	NA	NA
M1	chr10	41256492	12A2p6	cell line	sgMsh2	41256492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	141	27	7	0.259259259	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon12:c.C1317A:p.S439R	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	92	46	12	0.260869565	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	46	21	3	0.142857143	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	32	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9691708	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	44441236	12A2p6	cell line	sgMsh2	44441236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	116	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.A1590G:p.K530K	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	CTT	synonymous	NA	NA	NA	NA
M1	chr10	44441640	12A2p6	cell line	sgMsh2	44441640	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	91	0	0	NA	exonic	Prdm1	frameshift deletion	Prdm1:NM_007548:exon5:c.1186delC:p.H396Tfs*28	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1	chr10	50707714	12A2p6	cell line	sgMsh2	50707714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	127	16	0.125984252	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon17:c.T2758C:p.Y920H	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	2	0.9275981	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	50748859	12A2p6	cell line	sgMsh2	50748859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	185	32	0.172972973	exonic	Ascc3	synonymous SNV	Ascc3:NM_198007:exon31:c.T4842G:p.A1614A	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	CTT	synonymous	NA	NA	NA	NA
M1	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	136	94	14	0.14893617	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	39	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	TAC	synonymous	NA	NA	NA	NA
M1	chr10	52319904	12A2p6	cell line	sgMsh2	52319904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	93	31	4	0.129032258	exonic	Dcbld1	nonsynonymous SNV	"Dcbld1:NM_001347444:exon10:c.T1207C:p.S403P,Dcbld1:NM_025705:exon11:c.T1420C:p.S474P"	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	2	0.9763123	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	195	103	27	0.262135922	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999909	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	41	47	7	0.14893617	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.440593441	2	0.7366138	CAC	synonymous	NA	NA	NA	NA
M1	chr10	61424498	12A2p6	cell line	sgMsh2	61424498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	59	0	0	NA	exonic	Nodal	synonymous SNV	Nodal:NM_013611:exon3:c.A927G:p.R309R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9738088	GAT	synonymous	NA	NA	NA	NA
M1	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	114	23	4	0.173913043	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr10	62270049	12A2p6	cell line	sgMsh2	62270049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	42	219	42	0.191780822	exonic	Hk1	nonsynonymous SNV	"Hk1:NM_001146100:exon18:c.A2617G:p.R873G,Hk1:NM_010438:exon22:c.A2698G:p.R900G"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	75	51	20	0.392156863	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	149	23	9	0.391304348	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	99	61	15	0.245901639	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr10	67219693	12A2p6	cell line	sgMsh2	67219693	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	147	63	16	0.253968254	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1209C:p.S403S,Jmjd1c:NM_207221:exon8:c.T1752C:p.S584S"	10qB5.1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998993	GTG	synonymous	NA	NA	NA	NA
M1	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	115	40	10	0.25	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.449677841	3	8.22E-06	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	128	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997395	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	75177937	12A2p6	cell line	sgMsh2	75177937	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	76	82	20	0.243902439	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon19:c.A3233C:p.E1078A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	75640020	12A2p6	cell line	sgMsh2	75640020	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	91	0	0	NA	exonic	Susd2	nonsynonymous SNV	"Susd2:NM_001162913:exon6:c.A784G:p.T262A,Susd2:NM_027890:exon8:c.A1144G:p.T382A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	75640498	12A2p6	cell line	sgMsh2	75640498	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	27	0	0	NA	exonic	Susd2	frameshift deletion	"Susd2:NM_001162913:exon4:c.573delC:p.C192Afs*61,Susd2:NM_027890:exon6:c.933delC:p.C312Afs*61"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	NA	NA	AGG	frameshift	NA	NA	NA	-1
M1	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	69	206	66	0.32038835	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	AAG	synonymous	NA	NA	NA	NA
M1	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;MuSe	2	0.269	10	26	6	0.230769231	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9120196	CTA	synonymous	NA	NA	NA	NA
M1	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	118	61	10	0.163934426	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9994853	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr10	76533574	12A2p6	cell line	sgMsh2	76533574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	69	157	43	0.27388535	exonic	Lss	nonsynonymous SNV	Lss:NM_146006:exon3:c.T245C:p.V82A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	76721818	12A2p6	cell line	sgMsh2	76721818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	56	18	1	0.055555556	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon4:c.C583T:p.L195L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9904109	AGG	synonymous	NA	NA	NA	NA
M1	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	37	10	3	0.3	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8557655	CAC	synonymous	NA	NA	NA	NA
M1	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	49	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9550628	CTG	synonymous	NA	NA	NA	NA
M1	chr10	77589712	12A2p6	cell line	sgMsh2	77589712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	163	155	21	0.135483871	exonic	Pttg1ip	nonsynonymous SNV	Pttg1ip:NM_145925:exon3:c.T238G:p.L80V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.999446	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	159	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999448	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	122	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	AAG	synonymous	NA	NA	NA	NA
M1	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	121	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.690414464	2	0.9531125	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	79825773	12A2p6	cell line	sgMsh2	79825773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	59	6	3	0.5	exonic	Misp	nonsynonymous SNV	Misp:NM_030218:exon2:c.C23T:p.P8L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.8068215	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr10	79865469	12A2p6	cell line	sgMsh2	79865469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	7	1	0.142857143	exonic	Plppr3	nonsynonymous SNV	Plppr3:NM_181681:exon7:c.T1538C:p.V513A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	2	0.5722069	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	34	36	8	0.222222222	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	21	18	7	0.388888889	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9476928	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	99	46	16	0.347826087	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9980858	GAC	synonymous	NA	NA	NA	NA
M1	chr10	80239939	12A2p6	cell line	sgMsh2	80239939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	124	45	4	0.088888889	exonic	Pwwp3a	nonsynonymous SNV	Pwwp3a:NM_023431:exon10:c.T1358C:p.F453S	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	2	0.5445306	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	46	1	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M1	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	49	1	0	0	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Vardict	2	0.124	24	2	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.563232852	2	0.490637	GTA	synonymous	NA	NA	NA	NA
M1	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	30	6	2	0.333333333	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	22	2	0	0	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Vardict	2	0.231	12	36	15	0.416666667	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9199642	TCC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	33	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	81	78	25	0.320512821	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	103	116	15	0.129310345	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9594267	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	110	107	16	0.14953271	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9435335	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	80788516	12A2p6	cell line	sgMsh2	80788516	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	30	6	0	0	exonic	Dot1l	synonymous SNV	Dot1l:NM_199322:exon24:c.T2817G:p.G939G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	GTT	synonymous	NA	NA	NA	NA
M1	chr10	80835604	12A2p6	cell line	sgMsh2	80835604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	26	0	0	NA	exonic	Lingo3	nonsynonymous SNV	"Lingo3:NM_001013758:exon2:c.T491C:p.I164T,Lingo3:NM_001359746:exon2:c.T491C:p.I164T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	59	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9918319	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	81178079	12A2p6	cell line	sgMsh2	81178079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	75	6993	1651	0.236093236	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon3:c.C245A:p.S82Y	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr10	81181120	12A2p6	cell line	sgMsh2	81181120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	77	6046	1598	0.26430698	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon11:c.A2030G:p.D677G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	53	35	11	0.314285714	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9258085	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	1	1	1	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	107	14	1	0.071428571	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	TTG	synonymous	NA	NA	NA	NA
M1	chr10	81643023	12A2p6	cell line	sgMsh2	81643023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	111	8	1	0.125	exonic	Ankrd24	synonymous SNV	"Ankrd24:NM_001374016:exon17:c.T1905C:p.D635D,Ankrd24:NM_027480:exon17:c.T1815C:p.D605D"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9968675	ATA	synonymous	NA	NA	NA	NA
M1	chr10	88472758	12A2p6	cell line	sgMsh2	88472758	A	-	Deletion	Strelka2;Vardict	2	0.2625	80	4	0	0	exonic	Sycp3	frameshift deletion	Sycp3:NM_011517:exon8:c.689delA:p.V233Lfs*1	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	73	51	9	0.176470588	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9959299	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	76	46	5	0.108695652	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	108	43	15	0.348837209	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr10	93497590	12A2p6	cell line	sgMsh2	93497590	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	95	2	0	0	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon11:c.T1019C:p.V340A	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.6977294	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	99	260	58	0.223076923	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr10	103215382	12A2p6	cell line	sgMsh2	103215382	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	149	0	0	NA	exonic	Lrriq1	frameshift deletion	"Lrriq1:NM_001163559:exon8:c.1508delA:p.N503Tfs*16,Lrriq1:NM_001361058:exon8:c.1508delA:p.N503Tfs*16,Lrriq1:NM_029134:exon8:c.1508delA:p.N503Tfs*16"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	71	171	33	0.192982456	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	110949683	12A2p6	cell line	sgMsh2	110949683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	28	7	0.25	exonic	Zdhhc17	nonsynonymous SNV	"Zdhhc17:NM_001359622:exon12:c.A1237G:p.T413A,Zdhhc17:NM_001359624:exon12:c.A451G:p.T151A,Zdhhc17:NM_172554:exon12:c.A1267G:p.T423A"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr10	112272214	12A2p6	cell line	sgMsh2	112272214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	50	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	"Kcnc2:NM_001025581:exon2:c.T509C:p.L170P,Kcnc2:NM_001359752:exon2:c.T509C:p.L170P,Kcnc2:NM_001359753:exon2:c.T509C:p.L170P,Kcnc2:NM_001379643:exon2:c.T509C:p.L170P,Kcnc2:NM_001379644:exon2:c.T509C:p.L170P"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	87	44	12	0.272727273	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	TAC	synonymous	NA	NA	NA	NA
M1	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	100	2	1	0.5	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	118205737	12A2p6	cell line	sgMsh2	118205737	T	C	SNV	Mutect2;Vardict	2	0.084	194	0	0	NA	exonic	Il22	synonymous SNV	Il22:NM_016971:exon3:c.T255C:p.A85A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.381544835	3	0.9998058	CTA	synonymous	NA	NA	NA	NA
M1	chr10	120146474	12A2p6	cell line	sgMsh2	120146474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	120	4	2	0.5	exonic	Irak3	nonsynonymous SNV	"Irak3:NM_001359184:exon9:c.A806G:p.Q269R,Irak3:NM_028679:exon9:c.A1082G:p.Q361R"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.8238368	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	48	8	2	0.25	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M1	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	75	2	0	0	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9429601	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	125	88	24	0.272727273	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	121	2	2	1	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	2	0.9961318	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	56	15	4	0.266666667	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	CCG	synonymous	NA	NA	NA	NA
M1	chr10	127004710	12A2p6	cell line	sgMsh2	127004710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	67	4	1	0.25	exonic	Avil	nonsynonymous SNV	Avil:NM_009635:exon3:c.C80T:p.A27V	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	0.6802108	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	110	57	5	0.087719298	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr10	127507730	12A2p6	cell line	sgMsh2	127507730	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	97	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon9:c.A740T:p.Y247F,Stac3:NM_177707:exon9:c.A740T:p.Y247F"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	101	1	1	1	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr10	127556307	12A2p6	cell line	sgMsh2	127556307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	72	38	5	0.131578947	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon53:c.T8466C:p.R2822R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.7920994	CAC	synonymous	NA	NA	NA	NA
M1	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	102	43	6	0.139534884	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	85	55	20	0.363636364	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	AAC	synonymous	NA	NA	NA	NA
M1	chr10	128125327	12A2p6	cell line	sgMsh2	128125327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	170	54	11	0.203703704	exonic	Baz2a	nonsynonymous SNV	Baz2a:NM_054078:exon26:c.A4909G:p.S1637G	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999682	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	175	154	54	0.350649351	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999752	CAC	synonymous	NA	NA	NA	NA
M1	chr10	128269379	12A2p6	cell line	sgMsh2	128269379	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	104	0	0	NA	exonic	Apof	nonsynonymous SNV	Apof:NM_133997:exon2:c.G368A:p.S123N	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr10	128519189	12A2p6	cell line	sgMsh2	128519189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	165	107	21	0.196261682	exonic	Esyt1	nonsynonymous SNV	Esyt1:NM_011843:exon14:c.A1468G:p.N490D	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708583265	2	0.9802619	TTG	nonsynonymous	GGGTT	10	GGGTTGGGTT	NA
M1	chr10	128521621	12A2p6	cell line	sgMsh2	128521621	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	137	102	0	0	exonic	Esyt1	stopgain	Esyt1:NM_011843:exon7:c.G823T:p.G275X	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999834	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	163	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999548	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9918319	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M1	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	95	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.266	133	0	0	NA	exonic	Olfr807	frameshift insertion	Olfr807:NM_146929:exon1:c.762dupT:p.M255Yfs*7	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATA	frameshift	A	5	AAAAA	1
M1	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	202	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	251	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr10	130425191	12A2p6	cell line	sgMsh2	130425191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	294	0	0	NA	exonic	Vmn2r85	nonsynonymous SNV	Vmn2r85:NM_001102602:exon3:c.T1276C:p.Y426H	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr10	130455795	12A2p6	cell line	sgMsh2	130455795	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	149	0	0	NA	exonic	Vmn2r86	frameshift deletion	Vmn2r86:NM_001103365:exon1:c.100delA:p.S34Vfs*19	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	336	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr11	3144837	12A2p6	cell line	sgMsh2	3144837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	33	9	0	0	exonic	Sfi1	nonsynonymous SNV	"Sfi1:NM_001363224:exon14:c.G350A:p.R117K,Sfi1:NM_001363222:exon15:c.G425A:p.R142K,Sfi1:NM_001363223:exon15:c.G425A:p.R142K,Sfi1:NM_030207:exon17:c.G1688A:p.R563K"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	3333389	12A2p6	cell line	sgMsh2	3333389	A	-	Deletion	Strelka2;Vardict	2	0.2268	97	22	0	0	exonic	Pik3ip1	frameshift deletion	Pik3ip1:NM_178149:exon4:c.488delA:p.D166Tfs*1	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M1	chr11	3488556	12A2p6	cell line	sgMsh2	3488556	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	107	0	0	NA	exonic	Pla2g3	synonymous SNV	Pla2g3:NM_172791:exon1:c.A205C:p.R69R	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	CAG	synonymous	CAGG	8	CAGGCAGG	NA
M1	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	96	44	4	0.090909091	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	CTG	synonymous	NA	NA	NA	NA
M1	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	86	1	0	0	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	4681472	12A2p6	cell line	sgMsh2	4681472	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	91	111	21	0.189189189	exonic	Ascc2	synonymous SNV	"Ascc2:NM_001376980:exon18:c.A1690C:p.R564R,Ascc2:NM_029291:exon19:c.A2032C:p.R678R"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9972685	GAG	synonymous	NA	NA	NA	NA
M1	chr11	5062649	12A2p6	cell line	sgMsh2	5062649	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	83	67	13	0.194029851	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon3:c.A686T:p.K229M,Gas2l1:NM_001190408:exon3:c.A686T:p.K229M,Gas2l1:NM_030228:exon4:c.A686T:p.K229M,Gas2l1:NM_144560:exon4:c.A686T:p.K229M"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9694322	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	42	60	16	0.266666667	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	107	3	0	0	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9992384	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	60	42	13	0.30952381	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	6601350	12A2p6	cell line	sgMsh2	6601350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	47	1	1	1	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1840G:p.S614G	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	1	8.74E-05	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	157	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999939	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	9298190	12A2p6	cell line	sgMsh2	9298190	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	163	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon18:c.T7936G:p.L2646V	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999548	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	86	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	GTG	synonymous	NA	NA	NA	NA
M1	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	43	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	1	0.665586	GTC	synonymous	NA	NA	NA	NA
M1	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	89	2	0	0	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.09299993	TTA	synonymous	NA	NA	NA	NA
M1	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	127	605	158	0.261157025	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	GCA	synonymous	NA	NA	NA	NA
M1	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	130	12	5	0.416666667	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	118	6	0	0	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M1	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	145	103	18	0.174757282	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9994679	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr11	30892283	12A2p6	cell line	sgMsh2	30892283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	139	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.T1187C:p.L396P	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8773803	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	150	51	15	0.294117647	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	127	41	12	0.292682927	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	94	70	17	0.242857143	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9935589	CTT	synonymous	NA	NA	NA	NA
M1	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	134	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.7108383	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	151	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.999373	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	34232862	12A2p6	cell line	sgMsh2	34232862	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	72	0	0	NA	exonic	Dock2	synonymous SNV	Dock2:NM_033374:exon47:c.G4770T:p.V1590V	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9942287	ACA	synonymous	NA	NA	NA	NA
M1	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	80	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	175	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999752	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	75	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	48	196	59	0.301020408	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.8278828	CAC	synonymous	NA	NA	NA	NA
M1	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	141	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.7726248	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M1	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	GTT	synonymous	NA	NA	NA	NA
M1	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	129	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	CTG	synonymous	NA	NA	NA	NA
M1	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	85	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	178	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999787	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	186	57	6	0.105263158	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9966693	AAC	synonymous	AACA	8	AACAAACA	NA
M1	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	50	5	0	0	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	98	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9892915	ATG	synonymous	NA	NA	NA	NA
M1	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	332	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.06E-08	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	271	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	86	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	48	1	0	0	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9212961	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	50781843	12A2p6	cell line	sgMsh2	50781843	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	34	0	0	NA	exonic	Adamts2	synonymous SNV	Adamts2:NM_175643:exon12:c.T1917C:p.D639D	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	ATG	synonymous	NA	NA	NA	NA
M1	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	115	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	80	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	GCC	synonymous	NA	NA	NA	NA
M1	chr11	51048574	12A2p6	cell line	sgMsh2	51048574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	248	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.C466A:p.L156I	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	131	82	20	0.243902439	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	103	10	2	0.2	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	106	289	18	0.062283737	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	62	104	25	0.240384615	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	81	61	15	0.245901639	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GTA	synonymous	NA	NA	NA	NA
M1	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	177	4	0	0	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	AAC	nonsynonymous	A	5	AAAAA	NA
M1	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	44	65	10	0.153846154	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	GTA	synonymous	NA	NA	NA	NA
M1	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	69	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722209866	2	0.570718	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	110	45	18	0.4	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9992414	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M1	chr11	58047989	12A2p6	cell line	sgMsh2	58047989	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	52	236	56	0.237288136	exonic	Larp1	nonsynonymous SNV	Larp1:NM_028451:exon10:c.G1490A:p.G497D	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.978517	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	54	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	CTG	synonymous	NA	NA	NA	NA
M1	chr11	58720856	12A2p6	cell line	sgMsh2	58720856	C	T	SNV	Mutect2;Vardict	2	0.037	315	0	0	NA	exonic	Olfr318	nonsynonymous SNV	Olfr318:NM_146501:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.168061415	3	1	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
M1	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	357	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9997516	AGT	synonymous	NA	NA	NA	NA
M1	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.079	444	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358833833	3	1.00E-09	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M1	chr11	58971082	12A2p6	cell line	sgMsh2	58971082	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	70	0	0	NA	exonic	Trim17	nonsynonymous SNV	Trim17:NM_031172:exon7:c.T939G:p.S313R	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	59208649	12A2p6	cell line	sgMsh2	59208649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	46	31	0	0	exonic	2310033P09Rik	nonsynonymous SNV	2310033P09Rik:NM_024210:exon1:c.A221G:p.E74G	11qB1.3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	27	90	21	0.233333333	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	ACG	synonymous	NA	NA	NA	NA
M1	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	81	94	27	0.287234043	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	62313100	12A2p6	cell line	sgMsh2	62313100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	118	29	6	0.206896552	exonic	Ttc19	nonsynonymous SNV	"Ttc19:NM_029704:exon8:c.T847G:p.S283A,Ttc19:NM_028360:exon9:c.T886G:p.S296A"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9710033	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	60	152	23	0.151315789	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Strelka2;Vardict	2	0.1096	228	180	2	0.011111111	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.497825166	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	160	2	0.0125	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.213	222	1378	410	0.297532656	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9999807	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr11	65003428	12A2p6	cell line	sgMsh2	65003428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	28	11	2	0.181818182	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_001099288:exon20:c.C2310A:p.P770P	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.962591	AGG	synonymous	TGGA	8	TGGATGGA	NA
M1	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	104	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	78	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9751428	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	194	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999904	GTG	synonymous	NA	NA	NA	NA
M1	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	114	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	217	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999958	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	145	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	67259361	12A2p6	cell line	sgMsh2	67259361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	93	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon39:c.C5643A:p.A1881A	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	CCT	synonymous	NA	NA	NA	NA
M1	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	43	1	1	1	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	AAC	synonymous	NA	NA	NA	NA
M1	chr11	68972634	12A2p6	cell line	sgMsh2	68972634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	123	15	1	0.066666667	exonic	Rangrf	nonsynonymous SNV	"Rangrf:NM_001285441:exon5:c.T569C:p.F190S,Rangrf:NM_001285442:exon5:c.T524C:p.F175S,Rangrf:NM_001285443:exon5:c.T536C:p.F179S,Rangrf:NM_021329:exon5:c.T545C:p.F182S"	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	277	65	2	0.030769231	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	44	14	0	0	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1	chr11	69421776	12A2p6	cell line	sgMsh2	69421776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	1	0	0	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon83:c.C12962T:p.T4321I	11qB3	chr11-3133045-69578588	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	30	27	4	0.148148148	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-69578589-69590980	2	2	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	69825656	12A2p6	cell line	sgMsh2	69825656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	49	68	20	0.294117647	exonic	Nlgn2	synonymous SNV	"Nlgn2:NM_198862:exon7:c.C2058T:p.S686S,Nlgn2:NM_001364137:exon8:c.C2058T:p.S686S"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.8758904	GGG	synonymous	GGAG	9	GGAGGGAGG	NA
M1	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	41	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	69966001	12A2p6	cell line	sgMsh2	69966001	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	16	5	0	0	exonic	Cldn7	synonymous SNV	"Cldn7:NM_016887:exon1:c.T75G:p.T25T,Cldn7:NM_001193619:exon2:c.T75G:p.T25T"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9337189	CTG	synonymous	NA	NA	NA	NA
M1	chr11	69992384	12A2p6	cell line	sgMsh2	69992384	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	40	948	202	0.213080169	exonic	Gabarap	nonsynonymous SNV	Gabarap:NM_019749:exon2:c.C110A:p.P37H	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	CCC	nonsynonymous	C	5	CCCCC	NA
M1	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	48	8	1	0.125	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	42	3	0	0	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M1	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	99	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	50	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	72831554	12A2p6	cell line	sgMsh2	72831554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	71	7	0	0	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon8:c.C1406T:p.T469I	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr11	74667181	12A2p6	cell line	sgMsh2	74667181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	188	49	12	0.244897959	exonic	Cluh	synonymous SNV	"Cluh:NM_001081158:exon21:c.C3397T:p.L1133L,Cluh:NM_001368711:exon22:c.C3283T:p.L1095L"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999871	GCT	synonymous	NA	NA	NA	NA
M1	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	77	41	10	0.243902439	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	1	0.5198511	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	75490692	12A2p6	cell line	sgMsh2	75490692	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	212	359	89	0.247910864	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon6:c.G918A:p.Q306Q	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9999906	AGC	synonymous	NA	NA	NA	NA
M1	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	26	0	0	NA	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	CTT	synonymous	NA	NA	NA	NA
M1	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	164	124	19	0.153225806	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	CAC	synonymous	NA	NA	NA	NA
M1	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	50	13	0.26	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	76066853	12A2p6	cell line	sgMsh2	76066853	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	179	72	11	0.152777778	exonic	Vps53	nonsynonymous SNV	Vps53:NM_026664:exon18:c.A1903T:p.S635C	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999797	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	35	10	2	0.2	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9733549	GTA	synonymous	NA	NA	NA	NA
M1	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	124	13	4	0.307692308	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	ATG	synonymous	NA	NA	NA	NA
M1	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	61	7	1	0.142857143	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	78231811	12A2p6	cell line	sgMsh2	78231811	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	149	157	2	0.012738854	exonic	Supt6	frameshift deletion	Supt6:NM_009297:exon6:c.585delA:p.K195Nfs*68	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	193	53	0.274611399	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	64	45	11	0.244444444	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.956401	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	47	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CTG	synonymous	NA	NA	NA	NA
M1	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	89	20	0.224719101	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	CTA	synonymous	NA	NA	NA	NA
M1	chr11	80133035	12A2p6	cell line	sgMsh2	80133035	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	221	14	2	0.142857143	exonic	Atad5	nonsynonymous SNV	Atad5:NM_001029856:exon21:c.G4972A:p.A1658T	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	80248517	12A2p6	cell line	sgMsh2	80248517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	177	129	41	0.317829457	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon13:c.T799C:p.S267P,Rhot1:NM_001163354:exon14:c.T1219C:p.S407P,Rhot1:NM_001163355:exon14:c.T1219C:p.S407P,Rhot1:NM_001362868:exon14:c.T1219C:p.S407P,Rhot1:NM_021536:exon14:c.T1219C:p.S407P,Rhot1:NM_001362869:exon15:c.T958C:p.S320P"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.9919338	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	122	111	27	0.243243243	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	83764970	12A2p6	cell line	sgMsh2	83764970	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	87	18	2	0.111111111	exonic	Heatr6	stopgain	Heatr6:NM_145432:exon7:c.C886T:p.R296X	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9970912	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	165	108	23	0.212962963	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999591	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr11	84819072	12A2p6	cell line	sgMsh2	84819072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	17	4	2	0.5	exonic	Mrm1	nonsynonymous SNV	Mrm1:NM_145433:exon1:c.A301G:p.R101G	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	9.89E-05	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	144	117	31	0.264957265	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999883	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	218	13	2	0.153846154	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999971	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	204	12	1	0.083333333	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999942	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	86226688	12A2p6	cell line	sgMsh2	86226688	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	112	63	14	0.222222222	exonic	Ints2	nonsynonymous SNV	"Ints2:NM_001363130:exon16:c.T2267G:p.M756R,Ints2:NM_001363129:exon17:c.T2207G:p.M736R,Ints2:NM_027421:exon17:c.T2207G:p.M736R"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.936159	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	114	41	6	0.146341463	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9853574	CAA	synonymous	CCT	8	CCTCCTCC	NA
M1	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	71	9	4	0.444444444	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.949887	CCA	synonymous	NA	NA	NA	NA
M1	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	169	25	6	0.24	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999665	CTA	synonymous	NA	NA	NA	NA
M1	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	75	54	13	0.240740741	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9819492	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	31	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	89016436	12A2p6	cell line	sgMsh2	89016436	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	58	120	32	0.266666667	exonic	Trim25	synonymous SNV	Trim25:NM_009546:exon9:c.G1620A:p.R540R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	GGC	synonymous	NA	NA	NA	NA
M1	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	151	11	2	0.181818182	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9919665	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr11	90540235	12A2p6	cell line	sgMsh2	90540235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	218	26	4	0.153846154	exonic	Stxbp4	synonymous SNV	Stxbp4:NM_011505:exon14:c.A1248G:p.Q416Q	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.7074059	ATT	synonymous	NA	NA	NA	NA
M1	chr11	90638273	12A2p6	cell line	sgMsh2	90638273	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	34	16	3	0.1875	exonic	Cox11	synonymous SNV	Cox11:NM_199008:exon1:c.T84G:p.T28T	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	CTG	synonymous	NA	NA	NA	NA
M1	chr11	93597217	12A2p6	cell line	sgMsh2	93597217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	108	0	0	NA	exonic	Car10	nonsynonymous SNV	"Car10:NM_028296:exon7:c.A739G:p.T247A,Car10:NM_001361707:exon8:c.A739G:p.T247A,Car10:NM_001361708:exon8:c.A739G:p.T247A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	88	4	2	0.5	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	48	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	11	4	0.363636364	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.995349	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	95	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	102	48	8	0.166666667	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	97238103	12A2p6	cell line	sgMsh2	97238103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	117	355	66	0.185915493	exonic	Npepps	synonymous SNV	Npepps:NM_008942:exon10:c.T1254C:p.H418H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	GAT	synonymous	NA	NA	NA	NA
M1	chr11	97316924	12A2p6	cell line	sgMsh2	97316924	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	102	77	8	0.103896104	exonic	Mrpl45	nonsynonymous SNV	Mrpl45:NM_025927:exon2:c.G244A:p.A82T	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr11	97328512	12A2p6	cell line	sgMsh2	97328512	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	105	203	36	0.177339901	exonic	Mrpl45	nonsynonymous SNV	Mrpl45:NM_025927:exon8:c.C865A:p.P289T	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9991586	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr11	97334465	12A2p6	cell line	sgMsh2	97334465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	121	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon12:c.A6863G:p.Y2288C	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996303	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	97726852	12A2p6	cell line	sgMsh2	97726852	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	42	85	11	0.129411765	exonic	Pip4k2b	synonymous SNV	Pip4k2b:NM_054051:exon4:c.A360T:p.S120S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CTG	synonymous	NA	NA	NA	NA
M1	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	95	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.7235683	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	72	615	172	0.279674797	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9228035	ATG	synonymous	NA	NA	NA	NA
M1	chr11	97992302	12A2p6	cell line	sgMsh2	97992302	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	93	0	0	NA	exonic	Arl5c	stopgain	Arl5c:NM_207231:exon5:c.C471A:p.C157X	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	98029849	12A2p6	cell line	sgMsh2	98029849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	105	12	5	0.416666667	exonic	Rpl19	nonsynonymous SNV	"Rpl19:NM_001159483:exon5:c.A425G:p.K142R,Rpl19:NM_009078:exon5:c.A431G:p.K144R"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9977776	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	48	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	98111013	12A2p6	cell line	sgMsh2	98111013	T	-	Deletion	Strelka2;Vardict	2	0.2262	168	101	4	0.03960396	exonic	Fbxl20	frameshift deletion	Fbxl20:NM_028149:exon5:c.251delA:p.N84Ifs*12	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.2571	35	57	6	0.105263158	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M1	chr11	98157518	12A2p6	cell line	sgMsh2	98157518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	115	84	24	0.285714286	exonic	Med1	nonsynonymous SNV	"Med1:NM_001080118:exon17:c.G2451T:p.Q817H,Med1:NM_013634:exon17:c.G2406T:p.Q802H"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9957107	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	115	59	21	0.355932203	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	AAG	synonymous	NA	NA	NA	NA
M1	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	106	4	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CAT	synonymous	NA	NA	NA	NA
M1	chr11	99949306	12A2p6	cell line	sgMsh2	99949306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	264	0	0	NA	exonic	Krtap9-5	nonsynonymous SNV	Krtap9-5:NM_001085527:exon1:c.A832G:p.T278A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	100492613	12A2p6	cell line	sgMsh2	100492613	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	30	357	0	0	exonic	Acly	frameshift deletion	"Acly:NM_134037:exon19:c.2127delA:p.I709Mfs*54,Acly:NM_001199296:exon20:c.2157delA:p.I719Mfs*54"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTA	frameshift	C	5	CCCCC	-1
M1	chr11	100592887	12A2p6	cell line	sgMsh2	100592887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	115	253	62	0.245059289	exonic	Dnajc7	synonymous SNV	"Dnajc7:NM_001378962:exon6:c.T519C:p.L173L,Dnajc7:NM_019795:exon6:c.T567C:p.L189L"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CAA	synonymous	NA	NA	NA	NA
M1	chr11	100893082	12A2p6	cell line	sgMsh2	100893082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	78	90	20	0.222222222	exonic	Stat3	nonsynonymous SNV	"Stat3:NM_011486:exon21:c.A2093G:p.D698G,Stat3:NM_213659:exon21:c.A2093G:p.D698G,Stat3:NM_213660:exon21:c.A2093G:p.D698G"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	101076863	12A2p6	cell line	sgMsh2	101076863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	41	15	0.365853659	exonic	Naglu	synonymous SNV	Naglu:NM_013792:exon6:c.A1638G:p.P546P	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9868556	CAA	synonymous	NA	NA	NA	NA
M1	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	103	81	21	0.259259259	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	115	39	7	0.179487179	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	101156833	12A2p6	cell line	sgMsh2	101156833	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	10	2	0.2	exonic	Tubg2	synonymous SNV	Tubg2:NM_134028:exon3:c.C243A:p.S81S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CCT	synonymous	CTC	8	CTCCTCCT	NA
M1	chr11	101248025	12A2p6	cell line	sgMsh2	101248025	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	75	0	0	NA	exonic	Ramp2	nonsynonymous SNV	Ramp2:NM_019444:exon4:c.C529A:p.L177I	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	101	234	66	0.282051282	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	33	16	2	0.125	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	102100618	12A2p6	cell line	sgMsh2	102100618	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	31	0	0	NA	exonic	Ppy	frameshift deletion	Ppy:NM_008918:exon2:c.94delC:p.L32Wfs*28	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr11	102156311	12A2p6	cell line	sgMsh2	102156311	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	72	34	7	0.205882353	exonic	Tmem101	synonymous SNV	Tmem101:NM_029649:exon1:c.C34T:p.L12L	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AGC	synonymous	NA	NA	NA	NA
M1	chr11	102455998	12A2p6	cell line	sgMsh2	102455998	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	49	0	0	NA	exonic	Itga2b	synonymous SNV	Itga2b:NM_010575:exon28:c.G2829A:p.R943R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	GCC	synonymous	NA	NA	NA	NA
M1	chr11	102800811	12A2p6	cell line	sgMsh2	102800811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	94	54	14	0.259259259	exonic	Gjc1	nonsynonymous SNV	"Gjc1:NM_001159382:exon3:c.A365G:p.K122R,Gjc1:NM_001159383:exon3:c.A365G:p.K122R,Gjc1:NM_001359040:exon3:c.A365G:p.K122R,Gjc1:NM_008122:exon3:c.A365G:p.K122R"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	56	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9121391	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	72	16	5	0.3125	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CCC	nonsynonymous	C	5	CCCCC	NA
M1	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	69	24	7	0.291666667	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	GTC	synonymous	NA	NA	NA	NA
M1	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	88	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	TTC	synonymous	NA	NA	NA	NA
M1	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	25	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.68E-06	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr11	105973467	12A2p6	cell line	sgMsh2	105973467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	120	5	2	0.4	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon9:c.A1433G:p.Q478R,Ace:NM_207624:exon9:c.A1433G:p.Q478R"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9994525	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	131	3	1	0.333333333	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	173	262	61	0.232824427	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	32	5	0.15625	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr11	106864712	12A2p6	cell line	sgMsh2	106864712	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	144	96	20	0.208333333	exonic	Smurf2	nonsynonymous SNV	Smurf2:NM_025481:exon5:c.G400T:p.V134L	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999883	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	48	99	16	0.161616162	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M1	chr11	107604288	12A2p6	cell line	sgMsh2	107604288	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.258	127	48	0	0	exonic	Helz	frameshift insertion	"Helz:NM_198298:exon11:c.1088dupA:p.T364Nfs*18,Helz:NM_001368755:exon12:c.1088dupA:p.T364Nfs*18"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M1	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	82	47	14	0.29787234	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9866859	ATA	synonymous	ATAA	8	ATAAATAA	NA
M1	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	127	22	9	0.409090909	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	110158302	12A2p6	cell line	sgMsh2	110158302	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.184	96	0	0	NA	exonic	Abca9	frameshift insertion	Abca9:NM_147220:exon6:c.678dupT:p.I227Yfs*139	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	NA	NA	ATA	frameshift	A	5	AAAAA	1
M1	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.221	191	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999889	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	85	73	22	0.301369863	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	113656221	12A2p6	cell line	sgMsh2	113656221	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.302	115	39	7	0.179487179	exonic	Cog1	nonsynonymous SNV	Cog1:NM_013581:exon7:c.C1640T:p.T547M	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	110	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9979011	CTT	synonymous	NA	NA	NA	NA
M1	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	304	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.7870609	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	87	86	19	0.220930233	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9953976	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	30	20	4	0.2	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	GTT	synonymous	NA	NA	NA	NA
M1	chr11	115881188	12A2p6	cell line	sgMsh2	115881188	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	92	11	2	0.181818182	exonic	Myo15b	synonymous SNV	Myo15b:NM_001384233:exon30:c.G5157T:p.L1719L	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	TGG	synonymous	NA	NA	NA	NA
M1	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	66	13	4	0.307692308	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	114	20	3	0.15	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9526694	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	85	122	35	0.286885246	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9912764	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	119	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995913	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	23	39	12	0.307692308	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	CAC	synonymous	NA	NA	NA	NA
M1	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	80	4	1	0.25	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9872755	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	88	118	20	0.169491525	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	GTG	synonymous	NA	NA	NA	NA
M1	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	23	137	39	0.284671533	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9178509	CTT	synonymous	NA	NA	NA	NA
M1	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	72	19	3	0.157894737	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr11	118268671	12A2p6	cell line	sgMsh2	118268671	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	115	29	5	0.172413793	exonic	Usp36	nonsynonymous SNV	Usp36:NM_001033528:exon14:c.C1946A:p.A649E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr11	119157859	12A2p6	cell line	sgMsh2	119157859	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	30	21	7	0.333333333	exonic	Tbc1d16	nonsynonymous SNV	"Tbc1d16:NM_001347625:exon5:c.G967A:p.V323M,Tbc1d16:NM_172443:exon5:c.G967A:p.V323M"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	ACC	nonsynonymous	CCA	9	CCACCACCA	NA
M1	chr11	119350079	12A2p6	cell line	sgMsh2	119350079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	73	5	0	0	exonic	Sgsh	nonsynonymous SNV	Sgsh:NM_018822:exon5:c.G561T:p.Q187H	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9959299	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	62	20	9	0.45	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9382621	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	23	24	4	0.166666667	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	CAG	synonymous	NA	NA	NA	NA
M1	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	104	47	16	0.340425532	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	44	23	9	0.391304348	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	1	0.6852515	TAC	nonsynonymous	C	5	CCCCC	NA
M1	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	104	1374	356	0.259097525	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CTG	synonymous	NA	NA	NA	NA
M1	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	64	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9916914	GTG	synonymous	NA	NA	NA	NA
M1	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	60	194	57	0.293814433	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	134	37	0.276119403	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr11	120642909	12A2p6	cell line	sgMsh2	120642909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	99	145	34	0.234482759	exonic	Pycr1	nonsynonymous SNV	"Pycr1:NM_001379087:exon2:c.A82G:p.T28A,Pycr1:NM_001379088:exon2:c.A31G:p.T11A,Pycr1:NM_001379089:exon2:c.A31G:p.T11A,Pycr1:NM_001348222:exon3:c.A121G:p.T41A,Pycr1:NM_001379085:exon3:c.A121G:p.T41A,Pycr1:NM_001379086:exon3:c.A211G:p.T71A"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr11	120654486	12A2p6	cell line	sgMsh2	120654486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	55	0	0	NA	exonic	Notum	nonsynonymous SNV	"Notum:NM_001382269:exon12:c.A1246G:p.R416G,Notum:NM_175263:exon12:c.A1246G:p.R416G"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr11	120792493	12A2p6	cell line	sgMsh2	120792493	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	50	48	0	0	exonic	Dus1l	frameshift deletion	Dus1l:NM_026824:exon8:c.704delA:p.N235Tfs*60	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr11	121055920	12A2p6	cell line	sgMsh2	121055920	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	120	0	0	NA	exonic	Sectm1b	frameshift deletion	Sectm1b:NM_026907:exon4:c.148delC:p.R50Afs*2	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	NA	NA	CGG	frameshift	NA	NA	NA	-1
M1	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	8	4	0.5	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	154	31	4	0.129032258	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M1	chr12	4201333	12A2p6	cell line	sgMsh2	4201333	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	33	4	0	0	exonic	Adcy3	nonsynonymous SNV	"Adcy3:NM_138305:exon10:c.A1954T:p.I652F,Adcy3:NM_001159536:exon11:c.A1954T:p.I652F,Adcy3:NM_001159537:exon11:c.A1954T:p.I652F"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	131	23	5	0.217391304	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.9965339	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	147	134	14	0.104477612	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.9994406	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	4866191	12A2p6	cell line	sgMsh2	4866191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	exonic	Mfsd2b	synonymous SNV	Mfsd2b:NM_001033488:exon11:c.C1107T:p.G369G	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.8440252	CGC	synonymous	NA	NA	NA	NA
M1	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	184	39	6	0.153846154	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.9999458	GTT	synonymous	TTA	8	TTATTATT	NA
M1	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	169	7	2	0.285714286	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.09488078	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	124	21	3	0.142857143	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	2	8.83E-09	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M1	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	96	899	123	0.136818687	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8424017	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	104	235	46	0.195744681	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9986642	GAG	synonymous	NA	NA	NA	NA
M1	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	81	1211	72	0.059454996	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1	chr12	8987342	12A2p6	cell line	sgMsh2	8987342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	112	66	8	0.121212121	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon9:c.T947C:p.L316P,Wdr35:NM_172470:exon9:c.T947C:p.L316P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	1	0.5043446	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	212	73	10	0.136986301	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.449677841	3	0.930543	CTA	synonymous	NA	NA	NA	NA
M1	chr12	11317790	12A2p6	cell line	sgMsh2	11317790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	226	182	28	0.153846154	exonic	Smc6	nonsynonymous SNV	"Smc6:NM_001324476:exon26:c.T2606C:p.L869P,Smc6:NM_025695:exon27:c.T3200C:p.L1067P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	2	0.5863545	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	11456271	12A2p6	cell line	sgMsh2	11456271	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	37	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.G193A:p.E65K	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.667703461	1	0.5278189	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	124	35	6	0.171428571	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	2	8.83E-09	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr12	16926990	12A2p6	cell line	sgMsh2	16926990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	27	250	49	0.196	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon2:c.A193G:p.N65D	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	AAA	nonsynonymous	AAAAAT	13	AAAAATAAAAATA	NA
M1	chr12	17175107	12A2p6	cell line	sgMsh2	17175107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	203	5	1	0.2	exonic	Kcnf1	nonsynonymous SNV	Kcnf1:NM_201531:exon1:c.A1112G:p.Q371R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	2	0.999967	CTG	nonsynonymous	G	5	GGGGG	NA
M1	chr12	17278908	12A2p6	cell line	sgMsh2	17278908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	143	1231	177	0.14378554	exonic	Pdia6	synonymous SNV	Pdia6:NM_027959:exon7:c.T657C:p.A219A	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	2	0.9989916	CTG	synonymous	NA	NA	NA	NA
M1	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Vardict	2	0.099	331	71	5	0.070422535	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.449677841	3	0.9953842	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	246	153	32	0.209150327	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	0.9995499	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	28863025	12A2p6	cell line	sgMsh2	28863025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	181	26	5	0.192307692	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.T424C:p.Y142H,Eipr1:NM_201357:exon7:c.T724C:p.Y242H,Eipr1:NM_001379229:exon8:c.T424C:p.Y142H"	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9983066	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr12	29990976	12A2p6	cell line	sgMsh2	29990976	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	175	151	20	0.132450331	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon10:c.G1250A:p.S417N	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	2	0.6856561	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr12	31305879	12A2p6	cell line	sgMsh2	31305879	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.13	145	267	38	0.142322097	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon21:c.C2967A:p.A989A	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.590486054	2	0.9995758	CCT	synonymous	NA	NA	NA	NA
M1	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	240	375	3	0.008	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	182	1	0	0	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604112656	2	0.9999476	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	350	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	2.20E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	279	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.999889	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	32848661	12A2p6	cell line	sgMsh2	32848661	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	131	430	28	0.065116279	exonic	Nampt	frameshift deletion	Nampt:NM_021524:exon10:c.1275delA:p.K427Rfs*40	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	183	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9984535	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	206	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.635908059	2	0.9999384	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr12	44207019	12A2p6	cell line	sgMsh2	44207019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	164	111	19	0.171171171	exonic	Dnajb9	nonsynonymous SNV	Dnajb9:NM_013760:exon3:c.T604C:p.C202R	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.5450579	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	211	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.5878971	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	45019576	12A2p6	cell line	sgMsh2	45019576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	124	41	5	0.12195122	exonic	Stxbp6	synonymous SNV	Stxbp6:NM_144552:exon2:c.T45C:p.L15L	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.572317253	2	0.9982665	CAA	synonymous	NA	NA	NA	NA
M1	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	187	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.999259	CTG	synonymous	ACCT	8	ACCTACCT	NA
M1	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	110	39	8	0.205128205	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.667703461	2	0.9643563	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	186	185	29	0.156756757	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.993055	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	51603525	12A2p6	cell line	sgMsh2	51603525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	178	2	2	1	exonic	Coch	synonymous SNV	"Coch:NM_007728:exon10:c.C1296T:p.V432V,Coch:NM_001198835:exon11:c.C1296T:p.V432V"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.9222911	TCC	synonymous	NA	NA	NA	NA
M1	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	217	292	42	0.143835616	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	2	0.999941	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M1	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	92	107	13	0.121495327	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	53140127	12A2p6	cell line	sgMsh2	53140127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	194	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T4323C:p.S1441S	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	2	0.7436518	GTA	synonymous	NA	NA	NA	NA
M1	chr12	53142284	12A2p6	cell line	sgMsh2	53142284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	219	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T6480C:p.D2160D	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.613197056	2	0.9999925	ATG	synonymous	NA	NA	NA	NA
M1	chr12	54068603	12A2p6	cell line	sgMsh2	54068603	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.144	42	1	0	0	exonic	Npas3	synonymous SNV	"Npas3:NM_001370960:exon11:c.C2301T:p.G767G,Npas3:NM_001370963:exon11:c.C2304T:p.G768G,Npas3:NM_001370961:exon12:c.C2400T:p.G800G,Npas3:NM_001370962:exon12:c.C2385T:p.G795G,Npas3:NM_013780:exon12:c.C2394T:p.G798G,Npas3:NM_001370964:exon13:c.C2439T:p.G813G"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65407686	2	0.5693648	GCC	synonymous	NA	NA	NA	NA
M1	chr12	54673782	12A2p6	cell line	sgMsh2	54673782	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	245	224	50	0.223214286	exonic	Eapp	nonsynonymous SNV	"Eapp:NM_001331162:exon5:c.T533G:p.V178G,Eapp:NM_025456:exon6:c.T647G:p.V216G"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	2	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	155	267	82	0.307116105	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M1	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	206	11	0	0	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M1	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	166	75	8	0.106666667	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.9448877	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	86	138	0	0	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	207	32	8	0.25	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.9480351	AAG	synonymous	NA	NA	NA	NA
M1	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	243	90	11	0.122222222	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	2	0.9999978	CAA	nonsynonymous	T	5	TTTTT	NA
M1	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	128	122	7	0.057377049	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722209866	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1	chr12	65158554	12A2p6	cell line	sgMsh2	65158554	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.132	271	47	0	0	exonic	Mis18bp1	frameshift insertion	Mis18bp1:NM_172578:exon3:c.842dupA:p.N281Kfs*1	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	NA	NA	CAT	frameshift	NA	NA	NA	1
M1	chr12	65158831	12A2p6	cell line	sgMsh2	65158831	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	140	50	6	0.12	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon3:c.566delA:p.N189Mfs*11	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	140	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604112656	2	0.9992475	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	129	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	216	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.9974496	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr12	66722938	12A2p6	cell line	sgMsh2	66722938	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.1	156	0	0	NA	exonic	Mdga2	frameshift insertion	"Mdga2:NM_001193266:exon4:c.579dupT:p.T194Yfs*19,Mdga2:NM_207010:exon4:c.579dupT:p.T194Yfs*19"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.454220042	NA	NA	GTA	frameshift	A	5	AAAAA	1
M1	chr12	67220976	12A2p6	cell line	sgMsh2	67220976	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	243	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon1:c.G67T:p.V23L,Mdga2:NM_207010:exon1:c.G67T:p.V23L"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	2	0.9999853	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	255	88	17	0.193181818	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	119	876	155	0.176940639	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.6301843	GGC	synonymous	NA	NA	NA	NA
M1	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.191	71	136	17	0.125	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9346353	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr12	70161458	12A2p6	cell line	sgMsh2	70161458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	157	0	0	NA	exonic	Abhd12b	synonymous SNV	Abhd12b:NM_001195033:exon3:c.T231C:p.A77A	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.531437449	2	0.9924281	CTC	synonymous	NA	NA	NA	NA
M1	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	228	848	101	0.119103774	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	2	0.9999672	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	211	697	129	0.18507891	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.6817197	GTA	synonymous	NA	NA	NA	NA
M1	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	57	14	0.245614035	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9999644	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M1	chr12	73113094	12A2p6	cell line	sgMsh2	73113094	C	T	SNV	Mutect2;Strelka2	2	0.142	22	2	0	0	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon1:c.G91A:p.A31T,Six4:NM_001362272:exon2:c.G67A:p.A23T"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	1	0.006711798	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr12	73285203	12A2p6	cell line	sgMsh2	73285203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	276	67	11	0.164179104	exonic	Trmt5	nonsynonymous SNV	Trmt5:NM_029580:exon2:c.A78G:p.I26M	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.9981917	ATA	nonsynonymous	AAC	8	AACAACAA	NA
M1	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	184	1	1	1	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	2	0.6618277	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	193	51	8	0.156862745	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9781817	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	239	27	7	0.259259259	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.499642046	2	0.9262712	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.136	195	59	2	0.033898305	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	140	78	15	0.192307692	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.09173099	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	35	4	0.114285714	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	2	0.7092793	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	76328236	12A2p6	cell line	sgMsh2	76328236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	1	0	0	exonic	Akap5	synonymous SNV	Akap5:NM_001101471:exon2:c.A420G:p.E140E	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999834	AAG	synonymous	NA	NA	NA	NA
M1	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	208	126	27	0.214285714	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	2	0.7816222	CTC	nonsynonymous	C	5	CCCCC	NA
M1	chr12	76910260	12A2p6	cell line	sgMsh2	76910260	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	80	27	5	0.185185185	exonic	Fntb	nonsynonymous SNV	Fntb:NM_145927:exon9:c.G872A:p.R291H	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	1	0.5553602	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	150	37	6	0.162162162	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.9995373	TCG	nonsynonymous	NA	NA	NA	NA
M1	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	131	24	3	0.125	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	0.6145033	AGA	synonymous	NA	NA	NA	NA
M1	chr12	80662488	12A2p6	cell line	sgMsh2	80662488	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	168	60	12	0.2	exonic	Slc39a9	nonsynonymous SNV	Slc39a9:NM_026244:exon2:c.A115C:p.T39P	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.999645	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	218	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.9999368	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	233	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	31	7	0.225806452	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708583265	2	0.9934438	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	135	204	25	0.12254902	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.7447971	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr12	83047561	12A2p6	cell line	sgMsh2	83047561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	273	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon4:c.A187G:p.T63A,Rgs6:NM_001310478:exon4:c.A187G:p.T63A,Rgs6:NM_015812:exon4:c.A187G:p.T63A"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9931403	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	306	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999913	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	220	2	0	0	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.9833017	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr12	84649145	12A2p6	cell line	sgMsh2	84649145	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	187	0	0	NA	exonic	Vrtn	nonsynonymous SNV	"Vrtn:NM_001033776:exon2:c.C668T:p.A223V,Vrtn:NM_001168589:exon2:c.C668T:p.A223V,Vrtn:NM_001168588:exon3:c.C668T:p.A223V"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.404255837	3	0.9977749	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	293	121	19	0.157024793	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	2	0.8968815	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	85268015	12A2p6	cell line	sgMsh2	85268015	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	336	110	19	0.172727273	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.A1396C:p.S466R,Mlh3:NM_175337:exon2:c.A1396C:p.S466R"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9999998	CTG	nonsynonymous	TGT	8	TGTTGTTG	NA
M1	chr12	85290538	12A2p6	cell line	sgMsh2	85290538	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	91	9	1	0.111111111	exonic	Zc2hc1c	frameshift deletion	Zc2hc1c:NM_172414:exon2:c.968delG:p.E324Kfs*2	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	NA	NA	AGG	frameshift	NA	NA	NA	-1
M1	chr12	85933391	12A2p6	cell line	sgMsh2	85933391	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	186	33	4	0.121212121	exonic	Ttll5	synonymous SNV	"Ttll5:NM_001364628:exon26:c.G2232A:p.S744S,Ttll5:NM_001081423:exon27:c.G2748A:p.S916S,Ttll5:NM_001347395:exon27:c.G2748A:p.S916S,Ttll5:NM_001364624:exon27:c.G2748A:p.S916S,Ttll5:NM_001364625:exon27:c.G2748A:p.S916S,Ttll5:NM_001364626:exon27:c.G2748A:p.S916S,Ttll5:NM_001364627:exon27:c.G2454A:p.S818S,Ttll5:NM_001364630:exon27:c.G981A:p.S327S"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	2	0.6679257	CGT	synonymous	NA	NA	NA	NA
M1	chr12	86745035	12A2p6	cell line	sgMsh2	86745035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	137	0	0	NA	exonic	Lrrc74a	synonymous SNV	Lrrc74a:NM_001195767:exon6:c.A585G:p.L195L	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.490557645	2	0.8648036	TAT	synonymous	NA	NA	NA	NA
M1	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	66	126	28	0.222222222	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9579906	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	87279780	12A2p6	cell line	sgMsh2	87279780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	114	0	0	NA	exonic	Ism2	nonsynonymous SNV	Ism2:NM_001290302:exon6:c.T1384C:p.Y462H	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9370485	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	86	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9952079	CTT	synonymous	NA	NA	NA	NA
M1	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	86	46	5	0.108695652	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.94553	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	99	60	10	0.166666667	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.9931697	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	289	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.772174071	2	0.9465078	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	193	41	10	0.243902439	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	2	0.5070869	ATG	synonymous	NA	NA	NA	NA
M1	chr12	98680091	12A2p6	cell line	sgMsh2	98680091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	186	138	14	0.101449275	exonic	Ptpn21	nonsynonymous SNV	"Ptpn21:NM_001146199:exon17:c.C3107T:p.T1036M,Ptpn21:NM_011877:exon17:c.C3107T:p.T1036M"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.9242264	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	196	83	20	0.240963855	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.576859453	2	0.9999406	TGA	synonymous	NA	NA	NA	NA
M1	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	109	32	5	0.15625	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9970894	TAG	synonymous	NA	NA	NA	NA
M1	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	71	9	0	0	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9944982	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	126	28	1	0.035714286	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	65	1	0	0	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.8001279	AAC	synonymous	NA	NA	NA	NA
M1	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	99	18	2	0.111111111	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54052185	2	0.9860778	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr12	101058512	12A2p6	cell line	sgMsh2	101058512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	211	259	48	0.185328185	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A727G:p.T243A,Ppp4r3a:NM_211355:exon4:c.A727G:p.T243A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.690414464	2	0.998676	GTT	nonsynonymous	T	5	TTTTT	NA
M1	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.142	252	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	NA	NA	CCA	frameshift	NA	NA	NA	1
M1	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	94	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M1	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	119	133	24	0.180451128	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.921234	TTC	synonymous	NA	NA	NA	NA
M1	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	59	77	14	0.181818182	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.535979649	2	0.9310776	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.198	249	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9990952	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	256	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr12	103113063	12A2p6	cell line	sgMsh2	103113063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	128	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon30:c.A5429C:p.D1810A	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9992611	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	202	172	25	0.145348837	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.9731709	GAG	synonymous	NA	NA	NA	NA
M1	chr12	103576428	12A2p6	cell line	sgMsh2	103576428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	87	2	0	0	exonic	Ppp4r4	nonsynonymous SNV	Ppp4r4:NM_028980:exon4:c.G448T:p.G150C	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	7.71E-08	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr12	103675211	12A2p6	cell line	sgMsh2	103675211	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	205	0	0	NA	exonic	Serpina16	nonsynonymous SNV	Serpina16:NM_001310472:exon3:c.A254G:p.D85G	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.9999502	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr12	105217454	12A2p6	cell line	sgMsh2	105217454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	146	0	0	NA	exonic	Tcl1	nonsynonymous SNV	"Tcl1:NM_001289468:exon3:c.G539T:p.R180M,Tcl1:NM_001309484:exon3:c.G266T:p.R89M"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.535979649	2	0.9934122	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.154	129	97	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	NA	NA	TGT	frameshift	T	5	TTTTT	1
M1	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	149	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9960339	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	98	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9738672	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	98	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9206221	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	109033003	12A2p6	cell line	sgMsh2	109033003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	47	1	0	0	exonic	Begain	nonsynonymous SNV	"Begain:NM_001163175:exon7:c.A1841G:p.Y614C,Begain:NM_001374201:exon7:c.A1835G:p.Y612C,Begain:NM_001374202:exon7:c.A1823G:p.Y608C,Begain:NM_001374203:exon7:c.A1784G:p.Y595C,Begain:NM_001374200:exon8:c.A1931G:p.Y644C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	68	16	5	0.3125	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708583265	2	0.6280315	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr12	110868624	12A2p6	cell line	sgMsh2	110868624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	142	23	3	0.130434783	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon7:c.T2084C:p.L695P,Zfp839:NM_028365:exon8:c.T2312C:p.L771P"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8312654	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr12	111303847	12A2p6	cell line	sgMsh2	111303847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	276	186	23	0.123655914	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon27:c.A3517C:p.I1173L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9999774	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr12	111321076	12A2p6	cell line	sgMsh2	111321076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	68	186	35	0.188172043	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon13:c.A1772G:p.K591R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8600685	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	111429503	12A2p6	cell line	sgMsh2	111429503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	88	70	1	0.014285714	exonic	Exoc3l4	nonsynonymous SNV	"Exoc3l4:NM_001289489:exon12:c.T1949C:p.L650P,Exoc3l4:NM_028807:exon12:c.T1949C:p.L650P,Exoc3l4:NM_001289487:exon13:c.T1949C:p.L650P,Exoc3l4:NM_001289488:exon13:c.T1949C:p.L650P"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.9872471	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	111485500	12A2p6	cell line	sgMsh2	111485500	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	40	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A271C:p.S91R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8615588	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	121	16	2	0.125	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.554148451	2	0.9959997	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	33	7	0.212121212	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9949158	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	87	42	3	0.071428571	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.404255837	3	0.8293658	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	96	155	14	0.090322581	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.6592204	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	108	38	8	0.210526316	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9947901	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	165	48	3	0.0625	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9712265	AGT	synonymous	NA	NA	NA	NA
M1	chr12	113489969	12A2p6	cell line	sgMsh2	113489969	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	455	0	0	NA	exonic	Adam6b	synonymous SNV	Adam6b:NM_001009545:exon1:c.T405G:p.T135T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	2	2.09E-09	CTT	synonymous	NA	NA	NA	NA
M1	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	277	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.7288113	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	173	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	0.8409988	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	181	242	42	0.173553719	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.999488	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	160	213	1	0.004694836	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.9809737	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M1	chr12	117613409	12A2p6	cell line	sgMsh2	117613409	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	53	4	0	0	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon7:c.C761A:p.A254D,Rapgef5:NM_175930:exon9:c.C566A:p.A189D"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.8768441	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	118	4	0	0	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.668234	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr12	117721284	12A2p6	cell line	sgMsh2	117721284	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	214	7	0	0	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon17:c.T1664G:p.V555G,Rapgef5:NM_175930:exon19:c.T1469G:p.V490G"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	0.5127137	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	206	6	0	0	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	116	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.7914524	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	292	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	2	0.7984257	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr12	118008839	12A2p6	cell line	sgMsh2	118008839	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	279	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.A8609G:p.Y2870C	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	2	0.6211728	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr12	118127454	12A2p6	cell line	sgMsh2	118127454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	128	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon15:c.A2942G:p.Y981C	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.590486054	2	0.9987898	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr12	118131009	12A2p6	cell line	sgMsh2	118131009	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	123	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon14:c.G2323A:p.D775N	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.7263469	TCA	nonsynonymous	NA	NA	NA	NA
M1	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	146	9	2	0.222222222	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.78764	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	221	13	1	0.076923077	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999965	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr13	14019791	12A2p6	cell line	sgMsh2	14019791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	98	38	7	0.184210526	exonic	Tbce	synonymous SNV	Tbce:NM_178337:exon4:c.A282G:p.G94G	13qA1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988319	GTC	synonymous	NA	NA	NA	NA
M1	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	116	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr13	19660610	12A2p6	cell line	sgMsh2	19660610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	154	0	0	NA	exonic	Nme8	nonsynonymous SNV	"Nme8:NM_001167909:exon12:c.T1025C:p.I342T,Nme8:NM_181591:exon12:c.T1025C:p.I342T"	13qA2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr13	21133240	12A2p6	cell line	sgMsh2	21133240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	378	0	0	NA	exonic	Olfr263	nonsynonymous SNV	Olfr263:NM_010984:exon1:c.A464G:p.N155S	13qA2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.96E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	272	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GGC	synonymous	NA	NA	NA	NA
M1	chr13	22524076	12A2p6	cell line	sgMsh2	22524076	A	-	Deletion	Strelka2;Vardict	2	0.2732	183	0	0	NA	exonic	Vmn1r203	frameshift deletion	Vmn1r203:NM_134236:exon1:c.26delA:p.M11Wfs*2	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	AGGA	9	AGGAAGGAA	-1
M1	chr13	22524943	12A2p6	cell line	sgMsh2	22524943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	208	0	0	NA	exonic	Vmn1r203	nonsynonymous SNV	Vmn1r203:NM_134236:exon1:c.A893G:p.D298G	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999952	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	180	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999807	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.709	211	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999959	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr13	24710226	12A2p6	cell line	sgMsh2	24710226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	45	12	5	0.416666667	exonic	Ripor2	nonsynonymous SNV	"Ripor2:NM_001286100:exon16:c.A2161G:p.T721A,Ripor2:NM_029679:exon16:c.A2236G:p.T746A"	13qA3.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	33486605	12A2p6	cell line	sgMsh2	33486605	A	-	Deletion	Strelka2;Vardict	2	0.25	276	0	0	NA	exonic	Serpinb9g	frameshift deletion	Serpinb9g:NM_011455:exon2:c.75delA:p.N27Mfs*6	13qA3.3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	48	61	20	0.327868852	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	39	12	0.307692308	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9992637	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	86	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr13	49627300	12A2p6	cell line	sgMsh2	49627300	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	66	16	1	0.0625	exonic	Cenpp	frameshift deletion	Cenpp:NM_025495:exon5:c.516delT:p.F172Lfs*46	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	126	12	1	0.083333333	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	51	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	34	9	0	0	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	AAG	synonymous	NA	NA	NA	NA
M1	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	38	8	7	0.875	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9769844	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M1	chr13	52840883	12A2p6	cell line	sgMsh2	52840883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	26	36	12	0.333333333	exonic	Auh	synonymous SNV	Auh:NM_016709:exon7:c.A762G:p.L254L	13qB1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	GTA	synonymous	NA	NA	NA	NA
M1	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	50	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1	chr13	60725397	12A2p6	cell line	sgMsh2	60725397	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	61	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon12:c.A1112C:p.D371A,Dapk1:NM_029653:exon12:c.A1112C:p.D371A,Dapk1:NM_134062:exon12:c.A1112C:p.D371A"	13qB2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	177	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr13	61251720	12A2p6	cell line	sgMsh2	61251720	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.413	113	0	0	NA	exonic	Cts8	frameshift deletion	Cts8:NM_019541:exon5:c.424delT:p.S142Lfs*5	13qB2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	52	2	1	0.5	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	CTA	synonymous	NA	NA	NA	NA
M1	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	31	2	2	1	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	GAG	synonymous	NA	NA	NA	NA
M1	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	87	107	41	0.38317757	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr13	81270879	12A2p6	cell line	sgMsh2	81270879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	64	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon85:c.C17996T:p.T5999M	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	80	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	44	2	0	0	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr13	85225580	12A2p6	cell line	sgMsh2	85225580	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	130	100	35	0.35	exonic	Rasa1	nonsynonymous SNV	Rasa1:NM_145452:exon18:c.T2362G:p.L788V	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr13	93084553	12A2p6	cell line	sgMsh2	93084553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	94	0	0	NA	exonic	Cmya5	nonsynonymous SNV	Cmya5:NM_023821:exon3:c.A9547G:p.T3183A	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	39	20	3	0.15	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	88	90	34	0.377777778	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	ATT	synonymous	NA	NA	NA	NA
M1	chr13	100655392	12A2p6	cell line	sgMsh2	100655392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	117	143	45	0.314685315	exonic	Taf9	synonymous SNV	"Taf9:NM_001015889:exon3:c.A342G:p.R114R,Taf9:NM_027139:exon3:c.A342G:p.R114R"	13qD1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	GAT	synonymous	NA	NA	NA	NA
M1	chr13	106953470	12A2p6	cell line	sgMsh2	106953470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.421	218	21	0	0	exonic	Dimt1	frameshift deletion	Dimt1:NM_025447:exon9:c.700delA:p.N235Tfs*30	13qD2.1	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	66	68	21	0.308823529	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr13	119404633	12A2p6	cell line	sgMsh2	119404633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	48	59	27	0.457627119	exonic	Nnt	nonsynonymous SNV	Nnt:NM_001308506:exon2:c.A70G:p.K24E	13qD2.3	chr13-3556297-119495179	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	117	707	237	0.335219236	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	CCT	synonymous	NA	NA	NA	NA
M1	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	47	2	0	0	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CAG	synonymous	NA	NA	NA	NA
M1	chr14	14089311	12A2p6	cell line	sgMsh2	14089311	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	80	9	1	0.111111111	exonic	Atxn7	nonsynonymous SNV	Atxn7:NM_139227:exon6:c.C826A:p.L276I	14qA1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	63	39	13	0.333333333	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	TTA	synonymous	NA	NA	NA	NA
M1	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	70	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	90	8	3	0.375	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	24190421	12A2p6	cell line	sgMsh2	24190421	A	G	SNV	Mutect2;Vardict	2	0.267	13	30	11	0.366666667	exonic	Dlg5	nonsynonymous SNV	"Dlg5:NM_027726:exon4:c.T692C:p.L231P,Dlg5:NM_001163513:exon5:c.T761C:p.L254P"	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9236512	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	24457069	12A2p6	cell line	sgMsh2	24457069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	158	44	16	0.363636364	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon23:c.A3019G:p.T1007A	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999419	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	47	22	2	0.090909091	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	127	103	40	0.388349515	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	112	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	GAA	nonsynonymous	A	5	AAAAA	NA
M1	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.429	59	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	60	743	233	0.31359354	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	80	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	CAA	synonymous	NA	NA	NA	NA
M1	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.363	138	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	86	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	31147779	12A2p6	cell line	sgMsh2	31147779	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	110	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon41:c.C4315A:p.P1439T	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	GGG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M1	chr14	31148296	12A2p6	cell line	sgMsh2	31148296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	54	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon38:c.C4074T:p.R1358R	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	AGC	synonymous	NA	NA	NA	NA
M1	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	60	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	AGC	synonymous	NA	NA	NA	NA
M1	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	77	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	CAG	synonymous	NA	NA	NA	NA
M1	chr14	31577180	12A2p6	cell line	sgMsh2	31577180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	155	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon1:c.G69A:p.Q23Q	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999325	GCT	synonymous	NA	NA	NA	NA
M1	chr14	32201704	12A2p6	cell line	sgMsh2	32201704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	49	8	2	0.25	exonic	Timm23	synonymous SNV	Timm23:NM_016897:exon1:c.A45G:p.L15L	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	CTA	synonymous	NA	NA	NA	NA
M1	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	65	45	10	0.222222222	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	41	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.3077	26	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M1	chr14	34434451	12A2p6	cell line	sgMsh2	34434451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	79	93	31	0.333333333	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon7:c.G458T:p.W153L	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	63	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	68	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	37081422	12A2p6	cell line	sgMsh2	37081422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	46	0	0	NA	exonic	Cdhr1	nonsynonymous SNV	Cdhr1:NM_130878:exon15:c.A1696G:p.T566A	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	52	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	124	35	11	0.314285714	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	123	21	12	0.571428571	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GAC	synonymous	NA	NA	NA	NA
M1	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	70	21	7	0.333333333	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.643	27	5	1	0.2	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M1	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	208	34	13	0.382352941	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999952	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr14	50237914	12A2p6	cell line	sgMsh2	50237914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	85	0	0	NA	exonic	Olfr731	nonsynonymous SNV	Olfr731:NM_146363:exon1:c.T970C:p.S324P	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	90	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	TAA	synonymous	NA	NA	NA	NA
M1	chr14	50360968	12A2p6	cell line	sgMsh2	50360968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	200	0	0	NA	exonic	Tlr11	frameshift deletion	Tlr11:NM_205819:exon2:c.410delT:p.F139Lfs*8	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	247	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	162	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	53	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	72	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CGT	synonymous	NA	NA	NA	NA
M1	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	37	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	51826005	12A2p6	cell line	sgMsh2	51826005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.03	145	18	0	0	exonic	AY358078	nonsynonymous SNV	AY358078:NM_194347:exon9:c.A1107G:p.I369M	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.136266013	3	1.11E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	51911110	12A2p6	cell line	sgMsh2	51911110	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	27	26	15	0.576923077	exonic	Ndrg2	synonymous SNV	"Ndrg2:NM_001360264:exon3:c.C102A:p.A34A,Ndrg2:NM_001360265:exon3:c.C93A:p.A31A,Ndrg2:NM_001360266:exon3:c.C93A:p.A31A,Ndrg2:NM_001360269:exon3:c.C93A:p.A31A,Ndrg2:NM_013864:exon3:c.C93A:p.A31A,Ndrg2:NM_001360267:exon4:c.C93A:p.A31A,Ndrg2:NM_001360268:exon4:c.C93A:p.A31A"	14qC1	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	GGG	synonymous	NA	NA	NA	NA
M1	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	66	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	109	253	70	0.276679842	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M1	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.366	61	102	4	0.039215686	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-7422346-52852156	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	64	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	72	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	22	10	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	35	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9733549	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	49	21	2	0.095238095	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	1	0.5181918	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr14	55718523	12A2p6	cell line	sgMsh2	55718523	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	76	58	16	0.275862069	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.C1276T:p.R426C,Rabggta:NM_001360387:exon14:c.C1276T:p.R426C,Rabggta:NM_001360388:exon14:c.C1276T:p.R426C"	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	34	9	5	0.555555556	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	CTT	synonymous	NA	NA	NA	NA
M1	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	127	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr14	56465674	12A2p6	cell line	sgMsh2	56465674	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	111	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon15:c.A1881G:p.V627V	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	TAA	synonymous	NA	NA	NA	NA
M1	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	107	29	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	114	19	11	0.578947368	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr14	57597104	12A2p6	cell line	sgMsh2	57597104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	40	46	17	0.369565217	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.A2018G:p.E673G,Xpo4:NM_001368697:exon16:c.A1796G:p.E599G"	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	143	129	4	0.031007752	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	149	25	12	0.48	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M1	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	91	8003	2965	0.370486068	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	2	0	0	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M1	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	127	31	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	117	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	TAT	synonymous	NA	NA	NA	NA
M1	chr14	70467187	12A2p6	cell line	sgMsh2	70467187	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	58	0	0	NA	exonic	Phyhip	nonsynonymous SNV	Phyhip:NM_145981:exon5:c.T845G:p.L282R	14qD2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr14	73198565	12A2p6	cell line	sgMsh2	73198565	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	90	34	13	0.382352941	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon26:c.G2659A:p.E887K	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	TCC	nonsynonymous	NA	NA	NA	NA
M1	chr14	73216777	12A2p6	cell line	sgMsh2	73216777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	107	19	5	0.263157895	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon18:c.T1680G:p.D560E	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	42	34	11	0.323529412	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	131	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	101	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	CAG	synonymous	NA	NA	NA	NA
M1	chr14	79769726	12A2p6	cell line	sgMsh2	79769726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	35	0	0	NA	exonic	Pcdh8	nonsynonymous SNV	"Pcdh8:NM_001042726:exon1:c.A1396G:p.T466A,Pcdh8:NM_021543:exon1:c.A1396G:p.T466A"	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9733549	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr14	84448102	12A2p6	cell line	sgMsh2	84448102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	67	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.A2008G:p.T670A	14qD3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	87480883	12A2p6	cell line	sgMsh2	87480883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	86	17	5	0.294117647	exonic	Tdrd3	nonsynonymous SNV	"Tdrd3:NM_001253755:exon7:c.G717T:p.E239D,Tdrd3:NM_172605:exon7:c.G717T:p.E239D"	14qE1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr14	97831377	12A2p6	cell line	sgMsh2	97831377	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.293	71	0	0	NA	exonic	Dach1	frameshift insertion	"Dach1:NM_001038610:exon8:c.1765dupA:p.T589Nfs*51,Dach1:NM_007826:exon9:c.1921dupA:p.T641Nfs*51"	14qE2.1	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M1	chr14	99089729	12A2p6	cell line	sgMsh2	99089729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	34	68	21	0.308823529	exonic	Dis3	synonymous SNV	"Dis3:NM_001360051:exon8:c.T561C:p.A187A,Dis3:NM_028315:exon8:c.T1128C:p.A376A,Dis3:NM_001360050:exon9:c.T846C:p.A282A"	14qE2.2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	CAG	synonymous	NA	NA	NA	NA
M1	chr14	99150684	12A2p6	cell line	sgMsh2	99150684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	34	11	0.323529412	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon10:c.A1265G:p.N422S	14qE2.2	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	177	61	25	0.409836066	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr14	103155880	12A2p6	cell line	sgMsh2	103155880	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	109	61	12	0.196721311	exonic	Mycbp2	stopgain	Mycbp2:NM_207215:exon58:c.G9244T:p.G3082X	14qE2.3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	83	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	51	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	107	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	AAG	synonymous	NA	NA	NA	NA
M1	chr14	111679304	12A2p6	cell line	sgMsh2	111679304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	103	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.T434C:p.I145T,Slitrk5:NM_001378769:exon2:c.T359C:p.I120T,Slitrk5:NM_001378770:exon2:c.T359C:p.I120T,Slitrk5:NM_198865:exon2:c.T359C:p.I120T"	14qE4	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	111	4	0	0	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.172	25	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.8177593	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.33	70	5	0	0	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	204	330	76	0.23030303	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999942	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr14	123299159	12A2p6	cell line	sgMsh2	123299159	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	94	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon32:c.C3679A:p.L1227I	14qE5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	90	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	171	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	129	13	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M1	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	83	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	ATG	synonymous	A	5	AAAAA	NA
M1	chr15	6497091	12A2p6	cell line	sgMsh2	6497091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	100	0	0	NA	exonic	C9	nonsynonymous SNV	"C9:NM_013485:exon10:c.A1566G:p.I522M,C9:NM_001368421:exon11:c.A1440G:p.I480M"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	109	10	0	0	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	132	24	10	0.416666667	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	79	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9903754	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	127	35	0.275590551	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	TAT	synonymous	NA	NA	NA	NA
M1	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	105	35	9	0.257142857	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	65	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	CTT	nonsynonymous	G	5	GGGGG	NA
M1	chr15	12458016	12A2p6	cell line	sgMsh2	12458016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	128	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon4:c.A760G:p.T254A	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9997325	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.3	113	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	116	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	TTG	synonymous	NA	NA	NA	NA
M1	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	142	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998707	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	22	561	42	0.07486631	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722209866	1	0.7609954	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	197	69	14	0.202898551	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M1	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	89	30	2	0.066666667	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981685	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	93	4334	968	0.223350254	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M1	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	90	560	130	0.232142857	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.5836992	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr15	39784630	12A2p6	cell line	sgMsh2	39784630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	99	0	0	NA	exonic	Dpys	nonsynonymous SNV	"Dpys:NM_001164466:exon9:c.A1528G:p.T510A,Dpys:NM_022722:exon9:c.A1528G:p.T510A"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9624247	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	197	62	24	0.387096774	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr15	47629296	12A2p6	cell line	sgMsh2	47629296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon59:c.C9448T:p.P3150S	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	103	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	48314092	12A2p6	cell line	sgMsh2	48314092	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.365	94	0	0	NA	exonic	Csmd3	frameshift deletion	Csmd3:NM_001081391:exon7:c.1049delT:p.L350Pfs*7	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M1	chr15	52295937	12A2p6	cell line	sgMsh2	52295937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	154	0	0	NA	exonic	Slc30a8	nonsynonymous SNV	Slc30a8:NM_172816:exon1:c.T52C:p.Y18H	15qC	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9957036	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	119	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9185531	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	92	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.09860019	TAA	synonymous	NA	NA	NA	NA
M1	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	6	0	0	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	124	11	2	0.181818182	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.5373334	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr15	57254212	12A2p6	cell line	sgMsh2	57254212	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	0	0	NA	exonic	Slc22a22	nonsynonymous SNV	"Slc22a22:NM_001357930:exon6:c.C932T:p.A311V,Slc22a22:NM_172378:exon7:c.C932T:p.A311V"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9997302	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	66	459	136	0.296296296	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.97676	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	351	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.71E-09	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	68	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	TGA	synonymous	NA	NA	NA	NA
M1	chr15	66773377	12A2p6	cell line	sgMsh2	66773377	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	76	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon41:c.C7132T:p.R2378C	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9101247	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr15	66912929	12A2p6	cell line	sgMsh2	66912929	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	44	1	0	0	exonic	Ccn4	synonymous SNV	Ccn4:NM_018865:exon3:c.G450T:p.T150T	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CGG	synonymous	NA	NA	NA	NA
M1	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	64	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	93	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	61	44	7	0.159090909	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9878994	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr15	76057563	12A2p6	cell line	sgMsh2	76057563	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	68	52	4	0.076923077	exonic	Scrib	stopgain	"Scrib:NM_001310542:exon24:c.G3385T:p.G1129X,Scrib:NM_001310543:exon24:c.G3385T:p.G1129X,Scrib:NM_134089:exon24:c.G3385T:p.G1129X"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	138	7	2	0.285714286	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998421	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	102	177	43	0.242937853	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	GCG	synonymous	NA	NA	NA	NA
M1	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	48	87	19	0.218390805	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.8186405	GTG	synonymous	NA	NA	NA	NA
M1	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.289	44	85	20	0.235294118	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.27	43	89	23	0.258426966	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	AGA	synonymous	NA	NA	NA	NA
M1	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	80	11	0	0	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	121	83	3	0.036144578	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	67	24	3	0.125	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GGG	synonymous	NA	NA	NA	NA
M1	chr15	76715854	12A2p6	cell line	sgMsh2	76715854	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	94	0	0	NA	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon6:c.G1084T:p.A362S	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	108	14	6	0.428571429	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.7471005	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr15	77771882	12A2p6	cell line	sgMsh2	77771882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	37	679	140	0.206185567	exonic	Myh9	nonsynonymous SNV	Myh9:NM_022410:exon26:c.G3427A:p.A1143T	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	185	302	66	0.218543046	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999985	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	52	5	2	0.4	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	71	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	CAG	synonymous	NA	NA	NA	NA
M1	chr15	78443795	12A2p6	cell line	sgMsh2	78443795	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	26	1	0	0	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon15:c.T1714G:p.S572A,Tmprss6:NM_027902:exon15:c.T1750G:p.S584A"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	50	1766	440	0.249150623	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	66	85	14	0.164705882	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8703553	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr15	80902708	12A2p6	cell line	sgMsh2	80902708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	184	18	4	0.222222222	exonic	Tnrc6b	synonymous SNV	"Tnrc6b:NM_177124:exon14:c.T3939C:p.G1313G,Tnrc6b:NM_144812:exon17:c.T4047C:p.G1349G"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999791	GTT	synonymous	NA	NA	NA	NA
M1	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	90	48	9	0.1875	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	TCG	synonymous	NA	NA	NA	NA
M1	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	135	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	TAT	synonymous	NA	NA	NA	NA
M1	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	99	18	0.181818182	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	ATG	synonymous	NA	NA	NA	NA
M1	chr15	82022506	12A2p6	cell line	sgMsh2	82022506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	105	116	27	0.232758621	exonic	Xrcc6	nonsynonymous SNV	Xrcc6:NM_010247:exon4:c.T251C:p.V84A	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr15	82346154	12A2p6	cell line	sgMsh2	82346154	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	49	65	4	0.061538462	exonic	Smdt1	frameshift deletion	Smdt1:NM_026914:exon1:c.71delG:p.R26Gfs*35	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr15	82852575	12A2p6	cell line	sgMsh2	82852575	-	T	Insertion	Strelka2;Vardict	2	0.2558	129	105	5	0.047619048	exonic	Tcf20	frameshift insertion	"Tcf20:NM_001114140:exon2:c.4673_4674insA:p.K1559fs*0,Tcf20:NM_013836:exon2:c.4673_4674insA:p.K1559fs*0"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAG	frameshift	G	5	GGGGG	1
M1	chr15	83101931	12A2p6	cell line	sgMsh2	83101931	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	114	44	13	0.295454545	exonic	Serhl	nonsynonymous SNV	Serhl:NM_023475:exon3:c.G214T:p.G72C	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr15	83500100	12A2p6	cell line	sgMsh2	83500100	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	51	12	0.235294118	exonic	Ttll1	nonsynonymous SNV	"Ttll1:NM_001357953:exon6:c.T325G:p.F109V,Ttll1:NM_178869:exon6:c.T325G:p.F109V"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	211	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9997868	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	231	58	0.251082251	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	177	2	0	0	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8540582	CTC	synonymous	NA	NA	NA	NA
M1	chr15	85537437	12A2p6	cell line	sgMsh2	85537437	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	22	29	8	0.275862069	exonic	Wnt7b	synonymous SNV	"Wnt7b:NM_001163633:exon4:c.C801T:p.V267V,Wnt7b:NM_001163634:exon4:c.C1014T:p.V338V,Wnt7b:NM_009528:exon4:c.C1002T:p.V334V"	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	TGA	synonymous	NA	NA	NA	NA
M1	chr15	85928485	12A2p6	cell line	sgMsh2	85928485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	36	47	13	0.276595745	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon15:c.A6023G:p.K2008R	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	88864443	12A2p6	cell line	sgMsh2	88864443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	80	117	39	0.333333333	exonic	Pim3	synonymous SNV	Pim3:NM_145478:exon5:c.T744C:p.D248D	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	ATG	synonymous	NA	NA	NA	NA
M1	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	31	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9587219	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	200	22	19	0.863636364	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999929	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr15	89289947	12A2p6	cell line	sgMsh2	89289947	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	84	101	25	0.247524752	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon36:c.C5049G:p.R1683R,Sbf1:NM_001170561:exon37:c.C5127G:p.R1709R"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.8776578	GGC	synonymous	NA	NA	NA	NA
M1	chr15	89300838	12A2p6	cell line	sgMsh2	89300838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	66	114	30	0.263157895	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon24:c.A3081G:p.T1027T,Sbf1:NM_001170561:exon24:c.A3081G:p.T1027T"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GTG	synonymous	NA	NA	NA	NA
M1	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	55	33	9	0.272727273	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	GTA	synonymous	NA	NA	NA	NA
M1	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	113	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9974848	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	119	43	12	0.279069767	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995913	CAC	synonymous	NA	NA	NA	NA
M1	chr15	96414863	12A2p6	cell line	sgMsh2	96414863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	163	255	69	0.270588235	exonic	Scaf11	synonymous SNV	Scaf11:NM_028148:exon15:c.T4296C:p.V1432V	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999548	TAA	synonymous	NA	NA	NA	NA
M1	chr15	96432368	12A2p6	cell line	sgMsh2	96432368	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	241	254	19	0.07480315	exonic	Scaf11	frameshift deletion	Scaf11:NM_028148:exon5:c.354delT:p.F118Lfs*20	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	39	55	8	0.145454545	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	70	100	31	0.31	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GTA	synonymous	NA	NA	NA	NA
M1	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	115	25	0.217391304	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	57	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	157	35	9	0.257142857	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999939	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	98592787	12A2p6	cell line	sgMsh2	98592787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	136	99	16	0.161616162	exonic	Adcy6	nonsynonymous SNV	"Adcy6:NM_001368413:exon20:c.G3261A:p.M1087I,Adcy6:NM_007405:exon21:c.G3267A:p.M1089I"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	80	16	4	0.25	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr15	99037439	12A2p6	cell line	sgMsh2	99037439	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.274	105	131	55	0.419847328	exonic	Tuba1c	synonymous SNV	Tuba1c:NM_009448:exon4:c.A780G:p.V260V	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	TAC	synonymous	TACCC	11	TACCCTACCCT	NA
M1	chr15	99470788	12A2p6	cell line	sgMsh2	99470788	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	66	13	1	0.076923077	exonic	Bcdin3d	frameshift deletion	Bcdin3d:NM_029236:exon2:c.529delG:p.D177Tfs*62	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	123	34	12	0.352941176	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	11	1	0.090909091	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr15	101015952	12A2p6	cell line	sgMsh2	101015952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	139	0	0	NA	exonic	Scn8a	nonsynonymous SNV	"Scn8a:NM_011323:exon16:c.A3224G:p.Y1075C,Scn8a:NM_001077499:exon17:c.A3224G:p.Y1075C"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	101946618	12A2p6	cell line	sgMsh2	101946618	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.229	514	3	1	0.333333333	exonic	Krt78	synonymous SNV	Krt78:NM_212487:exon9:c.C2757T:p.T919T	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CGG	synonymous	NA	NA	NA	NA
M1	chr15	102030976	12A2p6	cell line	sgMsh2	102030976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	66	6596	1423	0.21573681	exonic	Krt18	nonsynonymous SNV	Krt18:NM_010664:exon5:c.A883G:p.T295A	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	2	0.9294881	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr15	102086606	12A2p6	cell line	sgMsh2	102086606	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	2038	386	0.189401374	exonic	Eif4b	nonsynonymous SNV	Eif4b:NM_145625:exon6:c.C634G:p.P212A	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9998894	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr15	102094729	12A2p6	cell line	sgMsh2	102094729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	149	1662	316	0.190132371	exonic	Eif4b	nonsynonymous SNV	Eif4b:NM_145625:exon13:c.G1634A:p.R545H	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9994461	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr15	102106274	12A2p6	cell line	sgMsh2	102106274	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	46	14	0	0	exonic	Tns2	nonsynonymous SNV	"Tns2:NM_001355636:exon4:c.G253T:p.A85S,Tns2:NM_153533:exon4:c.G253T:p.A85S"	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr15	102106818	12A2p6	cell line	sgMsh2	102106818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	170	31	5	0.161290323	exonic	Tns2	synonymous SNV	"Tns2:NM_001355636:exon6:c.G330A:p.K110K,Tns2:NM_153533:exon6:c.G330A:p.K110K"	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9993857	AGC	synonymous	NA	NA	NA	NA
M1	chr15	102107034	12A2p6	cell line	sgMsh2	102107034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	41	12	2	0.166666667	exonic	Tns2	nonsynonymous SNV	"Tns2:NM_001355636:exon7:c.C370A:p.L124I,Tns2:NM_153533:exon7:c.C370A:p.L124I"	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr15	102340397	12A2p6	cell line	sgMsh2	102340397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	72	62	11	0.177419355	exonic	Aaas	synonymous SNV	Aaas:NM_153416:exon8:c.T744C:p.T248T	15qF3	chr15-3279130-102454328	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9506164	TAG	synonymous	NA	NA	NA	NA
M1	chr15	102454336	12A2p6	cell line	sgMsh2	102454336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	49	5	1	0.2	exonic	Amhr2	nonsynonymous SNV	"Amhr2:NM_144547:exon11:c.T1537C:p.F513L,Amhr2:NM_001356575:exon12:c.T1537C:p.F513L"	15qF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	67	6	1	0.166666667	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M1	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	149	39	10	0.256410256	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M1	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	120	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	175	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr16	4092284	12A2p6	cell line	sgMsh2	4092284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	93	61	2	0.032786885	exonic	Crebbp	frameshift deletion	Crebbp:NM_001025432:exon27:c.4469delC:p.P1490Lfs*67	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	43	6	3	0.5	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M1	chr16	4611385	12A2p6	cell line	sgMsh2	4611385	C	-	Deletion	Strelka2;Vardict	2	0.194	67	40	5	0.125	exonic	Glis2	frameshift deletion	Glis2:NM_031184:exon4:c.451delC:p.K154Rfs*96	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCC	frameshift	TCCT	16	CTTCCTCCTTCCTTCC	-1
M1	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	72	35	11	0.314285714	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	145	195	31	0.158974359	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr16	4835784	12A2p6	cell line	sgMsh2	4835784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	147	0	0	NA	exonic	4930562C15Rik	nonsynonymous SNV	4930562C15Rik:NM_030192:exon1:c.G196A:p.D66N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998993	AGA	nonsynonymous	AGGG	10	AGGGAGGGAG	NA
M1	chr16	5011655	12A2p6	cell line	sgMsh2	5011655	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	47	33	5	0.151515152	exonic	Rogdi	nonsynonymous SNV	Rogdi:NM_133185:exon5:c.T293C:p.L98S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	40	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	ATG	synonymous	NA	NA	NA	NA
M1	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	44	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CAA	synonymous	NA	NA	NA	NA
M1	chr16	8478019	12A2p6	cell line	sgMsh2	8478019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	74	21	3	0.142857143	exonic	Mettl22	synonymous SNV	Mettl22:NM_146247:exon3:c.G171A:p.S57S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9885398	CGG	synonymous	G	5	GGGGG	NA
M1	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	39	40	6	0.15	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	155	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999325	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	129	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	155	99	29	0.292929293	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9993351	ATG	synonymous	NA	NA	NA	NA
M1	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	99	342	70	0.204678363	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9846359	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	135	230	44	0.191304348	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	CTA	synonymous	NA	NA	NA	NA
M1	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	78	292	63	0.215753425	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.613197056	2	0.9532214	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	110	197	51	0.258883249	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	96	76	19	0.25	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M1	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	16	4	0.25	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999764	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr16	16436031	12A2p6	cell line	sgMsh2	16436031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	79	18	8	0.444444444	exonic	Fgd4	nonsynonymous SNV	"Fgd4:NM_001301817:exon14:c.A2034G:p.I678M,Fgd4:NM_001301818:exon14:c.A1671G:p.I557M,Fgd4:NM_139232:exon14:c.A1671G:p.I557M"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	102	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9985361	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr16	16903428	12A2p6	cell line	sgMsh2	16903428	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	23	15	3	0.2	exonic	Ppm1f	nonsynonymous SNV	Ppm1f:NM_176833:exon2:c.T40G:p.C14G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	62	9	4	0.444444444	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	48	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	199	62	13	0.209677419	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999925	CTC	synonymous	NA	NA	NA	NA
M1	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	104	7	2	0.285714286	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	104	26	0.25	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	17807146	12A2p6	cell line	sgMsh2	17807146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	11	65	16	0.246153846	exonic	Scarf2	synonymous SNV	Scarf2:NM_153790:exon11:c.A2064G:p.K688K	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.916092	AAC	synonymous	NA	NA	NA	NA
M1	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	64	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	60	116	30	0.25862069	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8697626	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr16	20620213	12A2p6	cell line	sgMsh2	20620213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	51	4	1	0.25	exonic	Camk2n2	nonsynonymous SNV	Camk2n2:NM_028420:exon2:c.T200C:p.V67A	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	424	106	0.25	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9483973	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	176	792	212	0.267676768	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9989847	CTG	synonymous	NA	NA	NA	NA
M1	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	73	14	5	0.357142857	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9769282	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	68	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.88036	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	165	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999591	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	150	250	47	0.188	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9773365	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	30539470	12A2p6	cell line	sgMsh2	30539470	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	103	5	1	0.2	exonic	Tmem44	synonymous SNV	"Tmem44:NM_001357414:exon7:c.C849T:p.A283A,Tmem44:NM_001361297:exon7:c.C549T:p.A183A,Tmem44:NM_001384248:exon7:c.C849T:p.A283A,Tmem44:NM_172614:exon7:c.C849T:p.A283A,Tmem44:NM_001357413:exon8:c.C549T:p.A183A,Tmem44:NM_001357415:exon8:c.C549T:p.A183A,Tmem44:NM_001384249:exon8:c.C549T:p.A183A,Tmem44:NM_001384250:exon8:c.C549T:p.A183A,Tmem44:NM_001384251:exon8:c.C549T:p.A183A,Tmem44:NM_001384252:exon8:c.C549T:p.A183A"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	TGG	synonymous	CT	8	CTCTCTCT	NA
M1	chr16	31945207	12A2p6	cell line	sgMsh2	31945214	CTAGATTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	145	2	0	0	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.1082_1089del:p.R362Dfs*57	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65407686	NA	NA	GCT	frameshift	NA	NA	NA	-8
M1	chr16	32043950	12A2p6	cell line	sgMsh2	32043950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	88	270	53	0.196296296	exonic	Pak2	synonymous SNV	Pak2:NM_177326:exon4:c.A339G:p.K113K	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9968792	GTT	synonymous	NA	NA	NA	NA
M1	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	97	1	0	0	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9981594	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	284	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr16	32884200	12A2p6	cell line	sgMsh2	32884200	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	73	266	78	0.293233083	exonic	Fyttd1	nonsynonymous SNV	"Fyttd1:NM_001159349:exon2:c.T180G:p.S60R,Fyttd1:NM_001356387:exon2:c.T180G:p.S60R,Fyttd1:NM_027226:exon2:c.T180G:p.S60R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9959299	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	202	52	10	0.192307692	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999936	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr16	33985216	12A2p6	cell line	sgMsh2	33985216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	115	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon57:c.A8004C:p.E2668D	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.8908146	TTT	nonsynonymous	TTCC	8	TTCCTTCC	NA
M1	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.194	36	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.916969	CTT	synonymous	NA	NA	NA	NA
M1	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	2	1	0.5	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.981182	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	117	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9993693	GAT	synonymous	NA	NA	NA	NA
M1	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	92	7	2	0.285714286	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9709602	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	58	2	1	0.5	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr16	43609614	12A2p6	cell line	sgMsh2	43609614	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	112	16	4	0.25	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.C268T:p.L90L,Zbtb20:NM_019778:exon8:c.C487T:p.L163L,Zbtb20:NM_001285805:exon10:c.C487T:p.L163L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.998755	GCT	synonymous	NA	NA	NA	NA
M1	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	13	2	0.153846154	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9885284	TCT	synonymous	NA	NA	NA	NA
M1	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	171	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999697	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	46395206	12A2p6	cell line	sgMsh2	46395206	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	177	0	0	NA	exonic	Nectin3	nonsynonymous SNV	Nectin3:NM_021496:exon9:c.C1423T:p.R475C	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	195	67	11	0.164179104	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999909	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	69	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	9.27E-07	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	151	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr16	52047375	12A2p6	cell line	sgMsh2	52047375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	137	54	15	0.277777778	exonic	Cblb	nonsynonymous SNV	Cblb:NM_001033238:exon3:c.G345A:p.M115I	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9813026	TGA	nonsynonymous	NA	NA	NA	NA
M1	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	177	683	141	0.206442167	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	CAC	synonymous	NA	NA	NA	NA
M1	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	157	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999939	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	89	264	62	0.234848485	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981685	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	292	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M1	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	203	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	316	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.24E-08	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr16	59361855	12A2p6	cell line	sgMsh2	59361855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	414	0	0	NA	exonic	Olfr207;Olfr209	nonsynonymous SNV	"Olfr207:NM_001011792:exon1:c.G362A:p.R121H,Olfr209:NM_207551:exon1:c.G362A:p.R121H"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.490557645	2	0.6998411	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	63	4	0	0	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.7746004	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	59	6	0	0	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.1687	83	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.766269211	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M1	chr16	65839725	12A2p6	cell line	sgMsh2	65839725	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	52	0	0	NA	exonic	Vgll3	nonsynonymous SNV	"Vgll3:NM_001368760:exon3:c.T929G:p.F310C,Vgll3:NM_001368761:exon3:c.T761G:p.F254C,Vgll3:NM_028572:exon3:c.T926G:p.F309C"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	264	37	8	0.216216216	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	62	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CTG	synonymous	NA	NA	NA	NA
M1	chr16	76294630	12A2p6	cell line	sgMsh2	76294630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	83	59	25	0.423728814	exonic	Nrip1	nonsynonymous SNV	"Nrip1:NM_001358238:exon4:c.A38G:p.Q13R,Nrip1:NM_173440:exon4:c.A38G:p.Q13R"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	99	495	116	0.234343434	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	92	47	13	0.276595745	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9819543	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr16	89897828	12A2p6	cell line	sgMsh2	89897828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	180	9	1	0.111111111	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.G740A:p.G247E,Tiam1:NM_009384:exon4:c.G740A:p.G247E"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.999948	TCC	nonsynonymous	NA	NA	NA	NA
M1	chr16	89898041	12A2p6	cell line	sgMsh2	89898041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	109	6	1	0.166666667	exonic	Tiam1	stopgain	"Tiam1:NM_001145886:exon4:c.G527A:p.W176X,Tiam1:NM_009384:exon4:c.G527A:p.W176X"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	136	39	9	0.230769231	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	64	10	0	0	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M1	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	139	16	3	0.1875	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	CGC	synonymous	NA	NA	NA	NA
M1	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	108	88	20	0.227272727	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M1	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	30	102	33	0.323529412	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	51	35	3	0.085714286	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.7830428	GTA	synonymous	NA	NA	NA	NA
M1	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	150	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	179	1	1	1	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	76	32	0	0	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
M1	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	221	62	16	0.258064516	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	80	42	8	0.19047619	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	12890782	12A2p6	cell line	sgMsh2	12890782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	127	0	0	NA	exonic	Pnldc1	nonsynonymous SNV	Pnldc1:NM_001034866:exon16:c.T1196C:p.L399P	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.5687206	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	12947418	12A2p6	cell line	sgMsh2	12947418	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	216	99	0	0	exonic	Acat2	synonymous SNV	Acat2:NM_009338:exon6:c.C696T:p.G232G	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	TGC	synonymous	NA	NA	NA	NA
M1	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	804	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626823658	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	865	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	1	CCT	synonymous	NA	NA	NA	NA
M1	chr17	13236400	12A2p6	cell line	sgMsh2	13236400	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.125	489	0	0	NA	exonic	Smok2b	frameshift deletion	Smok2b:NM_001167913:exon2:c.1446delA:p.K484delinsNKTQEGCQENEHPARPRRSPEDAGCYDSTVIVLESTHV	17qA1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	49	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9174373	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	104	26	0.25	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9324827	CAT	synonymous	NA	NA	NA	NA
M1	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	233	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	246	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.291	275	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	230	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999984	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	481	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.237	361	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.25E-09	GTA	synonymous	NA	NA	NA	NA
M1	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	165	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9998431	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	152	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999216	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	148	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	243	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9818044	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr17	20993832	12A2p6	cell line	sgMsh2	20993833	GA	AT	DBS	Mutect2;Vardict	2	0.264	152	0	0	NA	exonic	Vmn1r233	nonframeshift substitution	Vmn1r233:NM_134202:exon1:c.854_855AT:p.F285Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	168	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999648	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	290	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.999432	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	143	79	27	0.341772152	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	103	91	20	0.21978022	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	24445156	12A2p6	cell line	sgMsh2	24445156	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	58	29	6	0.206896552	exonic	E4f1	nonsynonymous SNV	"E4f1:NM_001301784:exon10:c.C1556A:p.P519H,E4f1:NM_001355708:exon10:c.C1076A:p.P359H,E4f1:NM_007893:exon10:c.C1553A:p.P518H"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr17	24500925	12A2p6	cell line	sgMsh2	24500925	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	47	0	0	NA	exonic	Caskin1	synonymous SNV	"Caskin1:NM_001360469:exon12:c.C1185T:p.A395A,Caskin1:NM_027937:exon12:c.C1185T:p.A395A"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CCG	synonymous	G	5	GGGGG	NA
M1	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	24720330	12A2p6	cell line	sgMsh2	24720330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	42	5056	1192	0.235759494	exonic	Rps2	synonymous SNV	Rps2:NM_008503:exon2:c.T55C:p.L19L	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	ATT	synonymous	NA	NA	NA	NA
M1	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	99	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	82	49	8	0.163265306	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	64	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65407686	2	0.8018287	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M1	chr17	25723268	12A2p6	cell line	sgMsh2	25723268	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	27	15	4	0.266666667	exonic	Chtf18	synonymous SNV	Chtf18:NM_145409:exon12:c.C1506A:p.L502L	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	GGA	synonymous	NA	NA	NA	NA
M1	chr17	25937063	12A2p6	cell line	sgMsh2	25937063	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	52	55	12	0.218181818	exonic	Pigq	nonsynonymous SNV	"Pigq:NM_001291025:exon2:c.C390A:p.F130L,Pigq:NM_001357592:exon2:c.C390A:p.F130L,Pigq:NM_011822:exon2:c.C390A:p.F130L"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.635908059	2	0.742422	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	44	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	22	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	GAG	synonymous	NA	NA	NA	NA
M1	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	94	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	66	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	76	25	14	0.56	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	72	66	17	0.257575758	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	93	209	46	0.220095694	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	148	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	28963315	12A2p6	cell line	sgMsh2	28963315	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	157	91	30	0.32967033	exonic	Kctd20	nonsynonymous SNV	"Kctd20:NM_001356298:exon4:c.C575T:p.T192M,Kctd20:NM_001356299:exon4:c.C389T:p.T130M,Kctd20:NM_001356300:exon5:c.C602T:p.T201M,Kctd20:NM_025888:exon5:c.C602T:p.T201M"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999939	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr17	28974308	12A2p6	cell line	sgMsh2	28974308	A	-	Deletion	Strelka2;Vardict	2	0.2051	78	167	23	0.137724551	exonic	Stk38	frameshift deletion	"Stk38:NM_001357173:exon12:c.1146delT:p.F382Lfs*41,Stk38:NM_134115:exon12:c.1146delT:p.F382Lfs*41"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931605306	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	125	74	16	0.216216216	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	114	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.205	94	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9906722	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	74	2	0	0	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.5363052	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	124	45	13	0.288888889	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M1	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	24	2	0.083333333	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.009980149	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M1	chr17	32537164	12A2p6	cell line	sgMsh2	32537164	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	120	37	6	0.162162162	exonic	Cyp4f16	frameshift deletion	"Cyp4f16:NM_001356303:exon2:c.166delA:p.N58Tfs*8,Cyp4f16:NM_024442:exon2:c.166delA:p.N58Tfs*8"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	106	47	11	0.234042553	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	58	17	2	0.117647059	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9873002	AAG	synonymous	NA	NA	NA	NA
M1	chr17	33640763	12A2p6	cell line	sgMsh2	33640763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	44	0	0	NA	exonic	Pram1	synonymous SNV	Pram1:NM_001002842:exon2:c.A303G:p.E101E	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	AAT	synonymous	NA	NA	NA	NA
M1	chr17	33665526	12A2p6	cell line	sgMsh2	33665526	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	172	466	117	0.251072961	exonic	Hnrnpm	synonymous SNV	"Hnrnpm:NM_029804:exon7:c.T747G:p.T249T,Hnrnpm:NM_001109913:exon8:c.T630G:p.T210T"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999712	AAG	synonymous	NA	NA	NA	NA
M1	chr17	33913908	12A2p6	cell line	sgMsh2	33913908	C	-	Deletion	Strelka2;Vardict	2	0.1268	71	26	3	0.115384615	exonic	Daxx	frameshift deletion	"Daxx:NM_001199733:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_001355704:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_007829:exon7:c.2009delC:p.L673Wfs*21"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.575951013	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
M1	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	54	37	8	0.216216216	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	ATT	synonymous	NA	NA	NA	NA
M1	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	41	73	14	0.191780822	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	43	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.8066775	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	68	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	67	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	55	1	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	GAG	nonsynonymous	C	5	CCCCC	NA
M1	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	90	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	GCT	synonymous	G	5	GGGGG	NA
M1	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	34	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.685872263	1	0.606332	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	41	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9788686	TAG	synonymous	NA	NA	NA	NA
M1	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	177	1	0	0	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999776	CAG	synonymous	NA	NA	NA	NA
M1	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	57	113	28	0.247787611	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	35023392	12A2p6	cell line	sgMsh2	35023392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	106	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon11:c.T1471C:p.F491L,Vwa7:NM_138582:exon11:c.T1534C:p.F512L"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9934729	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	35153967	12A2p6	cell line	sgMsh2	35153967	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	76	347	98	0.282420749	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon20:c.C4878A:p.P1626P,Prrc2a:NM_020027:exon20:c.C4878A:p.P1626P"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	AGG	synonymous	TCCA	8	TCCATCCA	NA
M1	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	101	391	100	0.255754476	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.09957099	CGC	synonymous	NA	NA	NA	NA
M1	chr17	35516045	12A2p6	cell line	sgMsh2	35516045	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	31	5	0	0	exonic	Tcf19	frameshift deletion	"Tcf19:NM_001163763:exon2:c.71delC:p.P24Rfs*72,Tcf19:NM_001163764:exon2:c.71delC:p.P24Rfs*72,Tcf19:NM_025674:exon2:c.71delC:p.P24Rfs*72"	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	65	64	12	0.1875	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	ATG	synonymous	NA	NA	NA	NA
M1	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	63	37	5	0.135135135	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	TAC	synonymous	NA	NA	NA	NA
M1	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	131	106	27	0.254716981	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	CAG	synonymous	NA	NA	NA	NA
M1	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	51	66	6	0.090909091	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	88	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.286158626	3	0.9986897	CAG	synonymous	NA	NA	NA	NA
M1	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	104	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9973452	GCA	nonsynonymous	NA	NA	NA	NA
M1	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	134	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9990219	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	37590155	12A2p6	cell line	sgMsh2	37590155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	602	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.T197G:p.L66R	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Strelka2;Vardict	2	0.2278	417	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	415	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.15E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M1	chr17	37851530	12A2p6	cell line	sgMsh2	37851530	A	-	Deletion	Strelka2;Vardict	2	0.2338	231	0	0	NA	exonic	Olfr126	frameshift deletion	Olfr126:NM_146890:exon1:c.937delA:p.K314Nfs*6	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.2	160	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	NA	NA	AGA	frameshift	A	5	AAAAA	1
M1	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	151	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	131	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	384	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.71E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.216	61	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9896849	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	37	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	227	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.9896918	AGG	synonymous	NA	NA	NA	NA
M1	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	78	2	0	0	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9264875	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	135	105	10	0.095238095	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	45589785	12A2p6	cell line	sgMsh2	45589785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	85	157	35	0.222929936	exonic	Slc29a1	nonsynonymous SNV	"Slc29a1:NM_001376997:exon4:c.T254C:p.L85P,Slc29a1:NM_022880:exon4:c.T350C:p.L117P,Slc29a1:NM_001199114:exon5:c.T350C:p.L117P,Slc29a1:NM_001199115:exon5:c.T350C:p.L117P,Slc29a1:NM_001199116:exon5:c.T350C:p.L117P,Slc29a1:NM_001376987:exon5:c.T350C:p.L117P,Slc29a1:NM_001376988:exon5:c.T350C:p.L117P,Slc29a1:NM_001376998:exon5:c.T254C:p.L85P,Slc29a1:NM_001199113:exon6:c.T350C:p.L117P,Slc29a1:NM_001357771:exon6:c.T350C:p.L117P,Slc29a1:NM_001376989:exon6:c.T350C:p.L117P,Slc29a1:NM_001376990:exon6:c.T350C:p.L117P,Slc29a1:NM_001376991:exon6:c.T350C:p.L117P,Slc29a1:NM_001376992:exon6:c.T350C:p.L117P,Slc29a1:NM_001376993:exon6:c.T350C:p.L117P,Slc29a1:NM_001376994:exon6:c.T350C:p.L117P,Slc29a1:NM_001376995:exon6:c.T350C:p.L117P,Slc29a1:NM_001376996:exon6:c.T350C:p.L117P"	17qB3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	74	17	0.22972973	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	12	62	11	0.177419355	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9199642	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	89	37	4	0.108108108	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.9626813	AGG	synonymous	NA	NA	NA	NA
M1	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	92	1	0	0	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	102	112	27	0.241071429	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	44	23	9	0.391304348	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	64	48	0	0	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9873657	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	51	168	40	0.238095238	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	56424157	12A2p6	cell line	sgMsh2	56424157	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	77	147	1	0.006802721	exonic	Ptprs	frameshift deletion	"Ptprs:NM_001252453:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_001252455:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_001252456:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_011218:exon16:c.3248delG:p.G1083Afs*41"	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	84	43	10	0.23255814	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	2	0.7864942	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	134	2	0	0	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9998016	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	8	3	0.375	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	57004791	12A2p6	cell line	sgMsh2	57004791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	58	106	26	0.245283019	exonic	Gtf2f1	nonsynonymous SNV	Gtf2f1:NM_133801:exon7:c.G711T:p.K237N	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CCT	nonsynonymous	T	5	TTTTT	NA
M1	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	98	18	4	0.222222222	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9961794	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	175	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999752	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr17	64750835	12A2p6	cell line	sgMsh2	64750835	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	121	48	6	0.125	exonic	Man2a1	nonsynonymous SNV	Man2a1:NM_008549:exon21:c.T3235G:p.F1079V	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996303	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	114	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	71	993	232	0.233635448	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	TAG	synonymous	NA	NA	NA	NA
M1	chr17	65929790	12A2p6	cell line	sgMsh2	65929790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	61	61	10	0.163934426	exonic	Twsg1	nonsynonymous SNV	Twsg1:NM_023053:exon4:c.A244G:p.S82G	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9789014	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	23	42	17	0.404761905	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M1	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	72	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M1	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	121	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	2	0.9954987	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	70844920	12A2p6	cell line	sgMsh2	70844920	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	125	534	129	0.241573034	exonic	Tgif1	nonsynonymous SNV	"Tgif1:NM_001164077:exon2:c.A536T:p.D179V,Tgif1:NM_001164074:exon3:c.A536T:p.D179V,Tgif1:NM_001164075:exon3:c.A695T:p.D232V,Tgif1:NM_001164076:exon3:c.A536T:p.D179V,Tgif1:NM_009372:exon3:c.A596T:p.D199V"	17qE1.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr17	71109754	12A2p6	cell line	sgMsh2	71109754	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	181	2	0	0	exonic	Myom1	nonsynonymous SNV	"Myom1:NM_001083934:exon29:c.A3817T:p.I1273F,Myom1:NM_010867:exon30:c.A4111T:p.I1371F"	17qE1.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9994549	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	15	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9305185	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	19	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	1	0.8023434	CTG	synonymous	NA	NA	NA	NA
M1	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Strelka2;Vardict	2	0.1333	30	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.605475316	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	80	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr17	74245063	12A2p6	cell line	sgMsh2	74245063	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	96	123	26	0.211382114	exonic	Memo1	synonymous SNV	Memo1:NM_133771:exon4:c.T237C:p.P79P	17qE2	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	AAG	synonymous	NA	NA	NA	NA
M1	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	52	61	23	0.37704918	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	GTG	synonymous	NA	NA	NA	NA
M1	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	96	72	23	0.319444444	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	78935744	12A2p6	cell line	sgMsh2	78935744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	106	39	0.367924528	exonic	Cebpz	synonymous SNV	Cebpz:NM_001024806:exon2:c.A480G:p.K160K	17qE3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.993621	CTT	synonymous	TCTT	9	TCTTTCTTT	NA
M1	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	143	85	22	0.258823529	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	149	97	20	0.206185567	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	153	87	17	0.195402299	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9997882	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M1	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	128	86	24	0.279069767	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.9818545	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	84672164	12A2p6	cell line	sgMsh2	84672164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	122	0	0	NA	exonic	Abcg5	nonsynonymous SNV	Abcg5:NM_031884:exon6:c.A767G:p.E256G	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.7978532	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	34	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	CTC	synonymous	NA	NA	NA	NA
M1	chr17	86136436	12A2p6	cell line	sgMsh2	86136436	-	T	Insertion	Strelka2;Vardict	2	0.1562	64	64	0	0	exonic	Srbd1	frameshift insertion	Srbd1:NM_030133:exon4:c.360dupA:p.P121Tfs*11	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.709491705	NA	NA	GGT	frameshift	T	8	TTTTTTTT	1
M1	chr17	86488208	12A2p6	cell line	sgMsh2	86488208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	124	9	1	0.111111111	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon7:c.A872G:p.N291S	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	60	6	4	0.666666667	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	1	0.5963056	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.26	60	33	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M1	chr17	87696538	12A2p6	cell line	sgMsh2	87696538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	349	71	3	0.042253521	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon8:c.T1320C:p.L440L	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.9997908	TTA	synonymous	NA	NA	NA	NA
M1	chr17	87719442	12A2p6	cell line	sgMsh2	87719442	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	373	130	5	0.038461538	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon14:c.G2365A:p.A789T	17qE4	chr17-3079405-94740433	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.417882438	3	0.9999943	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	173	141	33	0.234042553	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr18	3426897	12A2p6	cell line	sgMsh2	3426897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	149	149	29	0.194630872	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.T1526C:p.I509T,Cul2:NM_029402:exon15:c.T1526C:p.I509T"	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	76	26	7	0.269230769	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	248	131	42	0.320610687	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M1	chr18	7268573	12A2p6	cell line	sgMsh2	7268573	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	56	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon9:c.T945C:p.T315T	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	CAG	synonymous	NA	NA	NA	NA
M1	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	75	147	36	0.244897959	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr18	11084349	12A2p6	cell line	sgMsh2	11084349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	92	146	35	0.239726027	exonic	Gata6	nonsynonymous SNV	Gata6:NM_010258:exon7:c.A1637G:p.N546S	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	104	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9973452	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	148	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9997371	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	13846082	12A2p6	cell line	sgMsh2	13846082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	153	0	0	NA	exonic	Zfp521	synonymous SNV	"Zfp521:NM_001360804:exon4:c.T1273C:p.L425L,Zfp521:NM_145492:exon4:c.T1273C:p.L425L"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999254	AAG	synonymous	NA	NA	NA	NA
M1	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	138	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998421	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr18	20601741	12A2p6	cell line	sgMsh2	20601741	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	114	90	28	0.311111111	exonic	Dsg2	synonymous SNV	Dsg2:NM_007883:exon15:c.A2775G:p.V925V	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9955749	TAC	synonymous	NA	NA	NA	NA
M1	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	121	2	0	0	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9994777	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	79	81	7	0.086419753	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	61	4	1	0.25	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	21	18	3	0.166666667	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9476928	GGG	synonymous	NA	NA	NA	NA
M1	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	67	19	6	0.315789474	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	86	71	14	0.197183099	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	120	86	21	0.244186047	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	117	65	10	0.153846154	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	91	118	25	0.211864407	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9174097	TAC	synonymous	T	5	TTTTT	NA
M1	chr18	35179903	12A2p6	cell line	sgMsh2	35179903	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	71	583	152	0.260720412	exonic	Ctnna1	synonymous SNV	Ctnna1:NM_009818:exon6:c.G807A:p.Q269Q	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	AGC	synonymous	NA	NA	NA	NA
M1	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	134	714	153	0.214285714	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.504184246	2	0.939723	ATT	synonymous	NA	NA	NA	NA
M1	chr18	36691444	12A2p6	cell line	sgMsh2	36691444	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	44	1	0	0	exonic	E230025N22Rik	frameshift deletion	E230025N22Rik:NM_172831:exon6:c.463delC:p.R155Efs*4	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	85	315	54	0.171428571	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	36770182	12A2p6	cell line	sgMsh2	36770182	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	99	80	1	0.0125	exonic	Hars	frameshift deletion	Hars:NM_008214:exon10:c.1094delG:p.G365Afs*28	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1	chr18	36961044	12A2p6	cell line	sgMsh2	36961044	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	187	0	0	NA	exonic	Pcdha5	nonsynonymous SNV	Pcdha5:NM_009959:exon1:c.G605A:p.R202K	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999864	AGA	nonsynonymous	TAGA	8	TAGATAGA	NA
M1	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	306	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.62E-08	ATT	synonymous	ATT	9	ATTATTATT	NA
M1	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9999125	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.262	92	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	234	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.9137645	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	156	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.8992711	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr18	37402840	12A2p6	cell line	sgMsh2	37402840	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	235	0	0	NA	exonic	Pcdhb9	nonsynonymous SNV	Pcdhb9:NM_053134:exon1:c.G1886A:p.R629H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8068511	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	97	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	ATT	nonsynonymous	T	5	TTTTT	NA
M1	chr18	37474704	12A2p6	cell line	sgMsh2	37474704	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	251	0	0	NA	exonic	Pcdhb15	frameshift deletion	Pcdhb15:NM_053140:exon1:c.988delA:p.K330Nfs*5	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	93	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	CAG	synonymous	NA	NA	NA	NA
M1	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	204	4	0	0	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999942	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	255	221	41	0.185520362	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	48	35	8	0.228571429	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	141	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr18	38283868	12A2p6	cell line	sgMsh2	38283868	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	65	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.T203A:p.I68N	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	139	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9985956	GTT	nonsynonymous	T	5	TTTTT	NA
M1	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	58	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9800199	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr18	42731875	12A2p6	cell line	sgMsh2	42731875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	68	52	13	0.25	exonic	Ppp2r2b	nonsynonymous SNV	"Ppp2r2b:NM_027531:exon4:c.T359C:p.V120A,Ppp2r2b:NM_028392:exon4:c.T368C:p.V123A"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	150	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr18	44275599	12A2p6	cell line	sgMsh2	44275599	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	212	0	0	NA	exonic	Npy6r	frameshift deletion	Npy6r:NM_010935:exon2:c.86delA:p.Q29Hfs*4	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	121	22	6	0.272727273	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.8038717	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr18	45559416	12A2p6	cell line	sgMsh2	45559416	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	61	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	Kcnn2:NM_001312905:exon4:c.G88T:p.A30S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	133	3	0	0	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	AAG	synonymous	NA	NA	NA	NA
M1	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.3099	71	8	0	0	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M1	chr18	46505455	12A2p6	cell line	sgMsh2	46505455	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	145	111	21	0.189189189	exonic	Fem1c	nonsynonymous SNV	Fem1c:NM_173423:exon3:c.T1479A:p.N493K	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	309	622	148	0.237942122	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.13E-08	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr18	46720388	12A2p6	cell line	sgMsh2	46720388	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	176	2	1	0.5	exonic	Cdo1	nonsynonymous SNV	Cdo1:NM_033037:exon3:c.A302C:p.N101T	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9996829	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr18	47248622	12A2p6	cell line	sgMsh2	47248622	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	97	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.A2692T:p.S898C,Sema6a:NM_018744:exon19:c.A2857T:p.S953C"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	99	63	18	0.285714286	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	40	61	10	0.163934426	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	CGA	synonymous	NA	NA	NA	NA
M1	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	89	20	3	0.15	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.9533989	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	77	160	36	0.225	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	CTA	synonymous	NA	NA	NA	NA
M1	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	84	132	37	0.28030303	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.8138398	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	109	87	21	0.24137931	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr18	63121323	12A2p6	cell line	sgMsh2	63121323	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	123	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon9:c.A1100C:p.K367T	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CTT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M1	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	106	88	20	0.227272727	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	105	162	55	0.339506173	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9974471	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	62	49	10	0.204081633	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	TTT	synonymous	NA	NA	NA	NA
M1	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	109	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	6.49E-08	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	108	48	12	0.25	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	11	1	0.090909091	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9665472	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	104	33	16	0.484848485	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr18	80408645	12A2p6	cell line	sgMsh2	80408645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	49	27	7	0.259259259	exonic	Ctdp1	nonsynonymous SNV	Ctdp1:NM_026295:exon13:c.A2878G:p.M960V	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	1	0.7008816	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	96	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	122	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	137	111	15	0.135135135	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	3628338	12A2p6	cell line	sgMsh2	3628338	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	136	238	8	0.033613445	exonic	Lrp5	stopgain	Lrp5:NM_008513:exon7:c.G1516T:p.G506X	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	65	32	8	0.25	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.657	83	2	1	0.5	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	82	1	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	96	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	52	1	1	1	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M1	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	188	4	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	242	29	3	0.103448276	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	202	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M1	chr19	4891072	12A2p6	cell line	sgMsh2	4891072	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	2	0	0	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon16:c.C1613T:p.P538L	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	96	3	1	0.333333333	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	5288395	12A2p6	cell line	sgMsh2	5288395	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	63	149	23	0.154362416	exonic	Sf3b2	nonsynonymous SNV	"Sf3b2:NM_001362454:exon6:c.C632A:p.P211H,Sf3b2:NM_030109:exon6:c.C635A:p.P212H"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	5496127	12A2p6	cell line	sgMsh2	5496127	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	74	12	1	0.083333333	exonic	Snx32	nonsynonymous SNV	"Snx32:NM_001024560:exon11:c.C1006T:p.R336W,Snx32:NM_001362042:exon11:c.C1006T:p.R336W"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	125	86	17	0.197674419	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	47	34	9	0.264705882	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	47	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M1	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	50	140	44	0.314285714	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr19	5892407	12A2p6	cell line	sgMsh2	5892407	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	96	0	0	NA	exonic	Tigd3	nonsynonymous SNV	"Tigd3:NM_001362045:exon2:c.C694T:p.P232S,Tigd3:NM_198634:exon2:c.C694T:p.P232S"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	5903752	12A2p6	cell line	sgMsh2	5903752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	159	5	2	0.4	exonic	Dpf2	nonsynonymous SNV	Dpf2:NM_001291078:exon7:c.A658G:p.T220A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	78	228	29	0.127192982	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M1	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	51	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	45	15	4	0.266666667	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	1	0.6535299	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	75	0	0	NA	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	95	83	14	0.168674699	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	83	904	164	0.181415929	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.7388888	TGC	synonymous	NA	NA	NA	NA
M1	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	44	45	6	0.133333333	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9595328	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	8750017	12A2p6	cell line	sgMsh2	8750017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	160	263	19	0.072243346	exonic	Stx5a	nonsynonymous SNV	"Stx5a:NM_019829:exon9:c.A898G:p.T300A,Stx5a:NM_001167799:exon10:c.A898G:p.T300A"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.472388843	2	0.5916351	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	316	86	0.272151899	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	27	3	0	0	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.19	85	463	89	0.192224622	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9375048	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	8895643	12A2p6	cell line	sgMsh2	8895643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	108	102	16	0.156862745	exonic	Ints5	nonsynonymous SNV	Ints5:NM_176843:exon2:c.G965A:p.G322E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.6894072	GGG	nonsynonymous	G	5	GGGGG	NA
M1	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	83	46	2	0.043478261	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.8946024	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.229	37	127	40	0.31496063	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	GTC	synonymous	NA	NA	NA	NA
M1	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	266	298	48	0.161073826	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	2	0.6764444	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	321	54	0.168224299	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9885284	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	10656684	12A2p6	cell line	sgMsh2	10656684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	163	2	0	0	exonic	Vwce	synonymous SNV	Vwce:NM_027913:exon15:c.G1836A:p.Q612Q	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.490557645	2	0.8533464	AGT	synonymous	NA	NA	NA	NA
M1	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9757031	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	125	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9986245	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9990791	GTA	synonymous	NA	NA	NA	NA
M1	chr19	12861870	12A2p6	cell line	sgMsh2	12861870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	exonic	Olfr1444	nonsynonymous SNV	Olfr1444:NM_146702:exon1:c.T94G:p.F32V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9957085	ATT	nonsynonymous	T	5	TTTTT	NA
M1	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	458	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	5.51E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	382	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9999874	TTG	synonymous	NA	NA	NA	NA
M1	chr19	12954304	12A2p6	cell line	sgMsh2	12954304	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	219	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.C714A:p.S238S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.372460434	3	0.9999817	CCT	synonymous	NA	NA	NA	NA
M1	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	249	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	NA	NA	CTA	frameshift	NA	NA	NA	-1
M1	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	474	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.01E-09	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M1	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	614	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	2	1.73E-08	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	13530453	12A2p6	cell line	sgMsh2	13530453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	478	0	0	NA	exonic	Olfr1480	nonsynonymous SNV	Olfr1480:NM_207575:exon1:c.A779G:p.Q260R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	2	1.00E-09	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Strelka2;Vardict	2	0.171	310	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	339	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9967686	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	13795252	12A2p6	cell line	sgMsh2	13795252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	235	0	0	NA	exonic	Olfr1497	nonsynonymous SNV	Olfr1497:NM_146741:exon1:c.T358C:p.Y120H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9996512	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	13828335	12A2p6	cell line	sgMsh2	13828335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	115	0	0	NA	exonic	Olfr1500	synonymous SNV	Olfr1500:NM_001011831:exon1:c.T60C:p.H20H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	9.53E-07	GAT	synonymous	NA	NA	NA	NA
M1	chr19	13919308	12A2p6	cell line	sgMsh2	13919308	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	358	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.G287A:p.R96H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999991	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	171	230	34	0.147826087	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9973349	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	269	84	12	0.142857143	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M1	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	39	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.8126412	AAG	synonymous	NA	NA	NA	NA
M1	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	196	154	11	0.071428571	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.6402091	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	116	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr19	23705761	12A2p6	cell line	sgMsh2	23705761	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	252	39	2	0.051282051	exonic	Ptar1	frameshift deletion	Ptar1:NM_028208:exon4:c.378delA:p.K127Nfs*3	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr19	24096635	12A2p6	cell line	sgMsh2	24096635	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	111	224	45	0.200892857	exonic	Tjp2	nonsynonymous SNV	"Tjp2:NM_001198985:exon22:c.C3356T:p.A1119V,Tjp2:NM_001360391:exon22:c.C3368T:p.A1123V,Tjp2:NM_001360392:exon22:c.C3176T:p.A1059V,Tjp2:NM_011597:exon22:c.C3287T:p.A1096V,Tjp2:NM_001376368:exon23:c.C3287T:p.A1096V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	2	0.5646581	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	24476650	12A2p6	cell line	sgMsh2	24476650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	141	46	10	0.217391304	exonic	Fam122a	nonsynonymous SNV	Fam122a:NM_026520:exon1:c.T707C:p.V236A	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.7726248	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	25155898	12A2p6	cell line	sgMsh2	25155898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	190	6	0	0	exonic	Dock8	synonymous SNV	Dock8:NM_028785:exon28:c.C3408T:p.C1136C	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8189855	GCT	synonymous	NA	NA	NA	NA
M1	chr19	25430990	12A2p6	cell line	sgMsh2	25430990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	85	19	3	0.157894737	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon11:c.G3586A:p.A1196T,Kank1:NM_181404:exon12:c.G3832A:p.A1278T"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.009861515	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	208	386	53	0.137305699	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.9866543	CTC	synonymous	NA	NA	NA	NA
M1	chr19	29331951	12A2p6	cell line	sgMsh2	29331952	TG	AA	DBS	Mutect2;Vardict	2	0.197	219	0	0	NA	exonic	Rln1	nonframeshift substitution	Rln1:NM_011272:exon2:c.426_427TT:p.S143C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	2	0	0	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999955	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	151	97	16	0.164948454	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8785032	TCG	synonymous	NA	NA	NA	NA
M1	chr19	31083835	12A2p6	cell line	sgMsh2	31083835	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	131	53	9	0.169811321	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.C770A:p.P257H	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.7612878	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	89	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.6783825	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	270	57	4	0.070175439	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.572317253	2	0.9999939	GTG	synonymous	NA	NA	NA	NA
M1	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	60	46	5	0.108695652	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9626283	TAG	synonymous	NA	NA	NA	NA
M1	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	322	13	0	0	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.6042233	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	270	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M1	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	290	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9982058	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	246	7	1	0.142857143	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	119	10	3	0.3	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.8197005	GTG	synonymous	NA	NA	NA	NA
M1	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	129	248	65	0.262096774	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	CAG	synonymous	NA	NA	NA	NA
M1	chr19	36852863	12A2p6	cell line	sgMsh2	36852863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	279	702	129	0.183760684	exonic	Tnks2	nonsynonymous SNV	Tnks2:NM_001163635:exon6:c.A695G:p.H232R	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	179	71	19	0.267605634	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999797	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	206	86	19	0.220930233	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.9937061	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr19	38097601	12A2p6	cell line	sgMsh2	38097601	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.134	43	41	5	0.12195122	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.C475A:p.L159M	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.7070264	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr19	38157525	12A2p6	cell line	sgMsh2	38157525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	437	0	0	NA	exonic	Pde6c	synonymous SNV	"Pde6c:NM_001170959:exon9:c.T1260C:p.H420H,Pde6c:NM_033614:exon9:c.T1260C:p.H420H"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	2	0.9999995	ATA	synonymous	NA	NA	NA	NA
M1	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	320	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.85E-08	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	128	66	2	0.03030303	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.6067496	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	39851197	12A2p6	cell line	sgMsh2	39851197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	324	0	0	NA	exonic	Cyp2c69	synonymous SNV	Cyp2c69:NM_001104525:exon7:c.T981C:p.I327I	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.999549	CAA	synonymous	NA	NA	NA	NA
M1	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	95	31	3	0.096774194	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9552531	CTG	synonymous	NA	NA	NA	NA
M1	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	242	41	3	0.073170732	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.6121743	AAG	synonymous	NA	NA	NA	NA
M1	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	181	1042	345	0.33109405	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999816	GAC	synonymous	NA	NA	NA	NA
M1	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	31	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9289571	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	42033786	12A2p6	cell line	sgMsh2	42033786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	56	46	7	0.152173913	exonic	Ubtd1	nonsynonymous SNV	Ubtd1:NM_145500:exon3:c.A496G:p.S166G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9851212	CAG	nonsynonymous	GCCT	9	GCCTGCCTG	NA
M1	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	78	195	30	0.153846154	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	9.54E-05	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	75	61	11	0.180327869	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	38	28	6	0.214285714	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9769844	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	326	89	21	0.235955056	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.9999522	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	105	183	48	0.262295082	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.913334	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	106	197	28	0.14213198	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9658373	AAG	synonymous	NA	NA	NA	NA
M1	chr19	45024867	12A2p6	cell line	sgMsh2	45024867	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.146	35	46	13	0.282608696	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon4:c.A1220G:p.Q407R,Lzts2:NM_001130526:exon4:c.A1220G:p.Q407R,Lzts2:NM_145503:exon4:c.A1220G:p.Q407R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	1	0.5392606	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	76	41	5	0.12195122	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9951915	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr19	46069744	12A2p6	cell line	sgMsh2	46069744	C	-	Deletion	Strelka2;Vardict	2	0.2738	84	51	1	0.019607843	exonic	Pprc1	frameshift deletion	"Pprc1:NM_001081214:exon9:c.4331delC:p.N1447Tfs*72,Pprc1:NM_001346801:exon9:c.4337delC:p.N1449Tfs*72"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
M1	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	62	4	1	0.25	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	77	231	47	0.203463203	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.576859453	2	0.9731082	CTT	synonymous	NA	NA	NA	NA
M1	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	118	189	15	0.079365079	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.449677841	3	0.5987366	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	229	26	2	0.076923077	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.9970798	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	97	89	6	0.06741573	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.5937549	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	47397847	12A2p6	cell line	sgMsh2	47397847	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	60	9	2	0.222222222	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon3:c.T198G:p.D66E,Sh3pxd2a:NM_008018:exon3:c.T198G:p.D66E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.390629236	3	0.000964565	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	203	133	23	0.172932331	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	2	0.9909204	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	118	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr19	48029153	12A2p6	cell line	sgMsh2	48029153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	215	0	0	NA	exonic	Cfap58	synonymous SNV	Cfap58:NM_001163267:exon17:c.T2451C:p.N817N	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9999936	ATG	synonymous	NA	NA	NA	NA
M1	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	130	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.499642046	2	0.9205852	GTG	synonymous	NA	NA	NA	NA
M1	chr19	50175145	12A2p6	cell line	sgMsh2	50175145	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	86	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon23:c.G3070A:p.V1024M,Sorcs1:NM_001290356:exon23:c.G3070A:p.V1024M,Sorcs1:NM_001360457:exon23:c.G3070A:p.V1024M,Sorcs1:NM_021377:exon23:c.G3070A:p.V1024M"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr19	50222155	12A2p6	cell line	sgMsh2	50222155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	155	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon17:c.C2271T:p.C757C,Sorcs1:NM_001290356:exon17:c.C2271T:p.C757C,Sorcs1:NM_001360457:exon17:c.C2271T:p.C757C,Sorcs1:NM_021377:exon17:c.C2271T:p.C757C"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.939127	TGC	synonymous	NA	NA	NA	NA
M1	chr19	53618785	12A2p6	cell line	sgMsh2	53618785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	117	206	40	0.194174757	exonic	Smc3	nonsynonymous SNV	Smc3:NM_007790:exon7:c.T365C:p.M122T	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65407686	2	0.9835243	ATG	nonsynonymous	TGATG	10	TGATGTGATG	NA
M1	chr19	53909279	12A2p6	cell line	sgMsh2	53909279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	109	329	54	0.164133739	exonic	Pdcd4	nonsynonymous SNV	"Pdcd4:NM_001168491:exon3:c.T211C:p.S71P,Pdcd4:NM_001168492:exon3:c.T211C:p.S71P,Pdcd4:NM_011050:exon3:c.T211C:p.S71P"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.889526	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	166	32	5	0.15625	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9998496	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	140	799	210	0.262828536	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626823658	2	0.9982728	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	101	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.6467922	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	85	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.6607344	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M1	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	179	2	0	0	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999797	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr19	59315342	12A2p6	cell line	sgMsh2	59315342	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	189	281	45	0.160142349	exonic	Pdzd8	synonymous SNV	Pdzd8:NM_001033222:exon3:c.C1011A:p.S337S	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8820008	AGG	synonymous	NA	NA	NA	NA
M1	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	236	31	6	0.193548387	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.999818	GAT	synonymous	NA	NA	NA	NA
M1	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Strelka2;Vardict	2	0.119	84	107	3	0.028037383	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54052185	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M1	chr19	60779422	12A2p6	cell line	sgMsh2	60779422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	191	655	106	0.161832061	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon5:c.A677G:p.Q226R	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9999728	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	257	124	16	0.129032258	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708583265	2	0.9991856	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M1	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	124	105	29	0.276190476	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	4905559	12A2p6	cell line	sgMsh2	4905559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	68	74	15	0.202702703	exonic	Sephs1	nonsynonymous SNV	"Sephs1:NM_001362709:exon7:c.A731G:p.K244R,Sephs1:NM_001362710:exon7:c.A629G:p.K210R,Sephs1:NM_001362707:exon8:c.A839G:p.K280R,Sephs1:NM_001362708:exon8:c.A839G:p.K280R,Sephs1:NM_175400:exon8:c.A839G:p.K280R"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.576859453	2	0.9517122	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	91	14	3	0.214285714	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	5979843	12A2p6	cell line	sgMsh2	5979843	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	190	50	10	0.2	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon6:c.T1568C:p.L523S	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999883	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	104	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	182	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999825	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	44	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	AAG	synonymous	NA	NA	NA	NA
M1	chr2	21212697	12A2p6	cell line	sgMsh2	21212697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	187	65	20	0.307692308	exonic	Thnsl1	nonsynonymous SNV	Thnsl1:NM_177588:exon3:c.A1261G:p.I421V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999864	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	58	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	22946731	12A2p6	cell line	sgMsh2	22946731	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	45	217	47	0.216589862	exonic	Abi1	nonsynonymous SNV	"Abi1:NM_001377513:exon6:c.C332A:p.P111H,Abi1:NM_001077193:exon7:c.C836A:p.P279H,Abi1:NM_001377511:exon7:c.C473A:p.P158H,Abi1:NM_001377512:exon7:c.C464A:p.P155H,Abi1:NM_001077192:exon8:c.C1010A:p.P337H,Abi1:NM_001377510:exon8:c.C1013A:p.P338H,Abi1:NM_001331044:exon9:c.C1028A:p.P343H,Abi1:NM_001331045:exon9:c.C1025A:p.P342H,Abi1:NM_007380:exon9:c.C1097A:p.P366H,Abi1:NM_145994:exon9:c.C1100A:p.P367H,Abi1:NM_001077190:exon10:c.C1115A:p.P372H,Abi1:NM_001331043:exon10:c.C1112A:p.P371H"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	AGG	nonsynonymous	G	5	GGGGG	NA
M1	chr2	23155778	12A2p6	cell line	sgMsh2	23155778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	101	15	3	0.2	exonic	Mastl	synonymous SNV	Mastl:NM_025979:exon1:c.A84G:p.P28P	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	GTG	synonymous	NA	NA	NA	NA
M1	chr2	24159749	12A2p6	cell line	sgMsh2	24159749	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	89	0	0	NA	exonic	Il1f8	nonsynonymous SNV	Il1f8:NM_027163:exon5:c.G371T:p.R124I	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981685	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	1	0	0	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	9.11E-06	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	70	48	10	0.208333333	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	70	98	17	0.173469388	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9610051	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	24963493	12A2p6	cell line	sgMsh2	24963493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	105	27	10	0.37037037	exonic	Dph7	nonsynonymous SNV	Dph7:NM_026044:exon3:c.T319G:p.L107V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	55	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9744544	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	25285324	12A2p6	cell line	sgMsh2	25285324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	87	120	33	0.275	exonic	Anapc2	nonsynonymous SNV	Anapc2:NM_175300:exon13:c.T2375C:p.L792P	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9557998	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	25318882	12A2p6	cell line	sgMsh2	25318882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	44	0	0	NA	exonic	Grin1	nonsynonymous SNV	"Grin1:NM_001177656:exon1:c.G5A:p.S2N,Grin1:NM_001177657:exon1:c.G5A:p.S2N,Grin1:NM_001372558:exon1:c.G5A:p.S2N,Grin1:NM_001372559:exon1:c.G5A:p.S2N,Grin1:NM_001372560:exon1:c.G5A:p.S2N,Grin1:NM_001372561:exon1:c.G5A:p.S2N,Grin1:NM_001372562:exon1:c.G5A:p.S2N,Grin1:NM_008169:exon1:c.G5A:p.S2N"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	36	30	5	0.166666667	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	25446007	12A2p6	cell line	sgMsh2	25446007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	38	4	0.105263158	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon41:c.G6391T:p.G2131C,Abca2:NM_007379:exon41:c.G6388T:p.G2130C"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	65	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	25587510	12A2p6	cell line	sgMsh2	25587510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	67	76	16	0.210526316	exonic	Rabl6	synonymous SNV	Rabl6:NM_001024616:exon9:c.A927G:p.T309T	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	CTG	synonymous	NA	NA	NA	NA
M1	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	88	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	25900284	12A2p6	cell line	sgMsh2	25900284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	77	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon13:c.G1300A:p.A434T,Kcnt1:NM_001145403:exon14:c.G1282A:p.A428T,Kcnt1:NM_175462:exon14:c.G1342A:p.A448T"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr2	26460071	12A2p6	cell line	sgMsh2	26460071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	38	3	0	0	exonic	Notch1	synonymous SNV	Notch1:NM_008714:exon34:c.T7056C:p.I2352I	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9769844	TAA	synonymous	NA	NA	NA	NA
M1	chr2	27268189	12A2p6	cell line	sgMsh2	27268189	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	35	0	0	NA	exonic	Vav2	nonsynonymous SNV	Vav2:NM_009500:exon26:c.G2366T:p.S789I	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9615899	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	81	82	23	0.280487805	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	176	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999764	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	23	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	58	43	11	0.255813953	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	8.96E-06	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M1	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	32	8	0.25	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AAC	synonymous	NA	NA	NA	NA
M1	chr2	30107639	12A2p6	cell line	sgMsh2	30107639	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	16	5	0.3125	exonic	Zer1	synonymous SNV	"Zer1:NM_001290503:exon8:c.G1215A:p.K405K,Zer1:NM_178694:exon8:c.G1254A:p.K418K"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	ACT	synonymous	NA	NA	NA	NA
M1	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	58	6	0	0	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9898859	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	70	51	23	0.450980392	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr2	30341822	12A2p6	cell line	sgMsh2	30341822	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	61	51	11	0.215686275	exonic	Nup188	nonsynonymous SNV	Nup188:NM_198304:exon38:c.A4427C:p.D1476A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	105	27	0.257142857	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	41	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9799623	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	31457994	12A2p6	cell line	sgMsh2	31457994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	32	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon95:c.A14576G:p.N4859S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9691708	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	186	613	133	0.216965742	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr2	32304867	12A2p6	cell line	sgMsh2	32304867	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	19	58	16	0.275862069	exonic	Golga2	synonymous SNV	"Golga2:NM_001362698:exon17:c.G1812A:p.L604L,Golga2:NM_001362696:exon18:c.G1908A:p.L636L,Golga2:NM_001362697:exon18:c.G1893A:p.L631L,Golga2:NM_001080968:exon19:c.G1989A:p.L663L,Golga2:NM_001362695:exon19:c.G1989A:p.L663L,Golga2:NM_133852:exon20:c.G2070A:p.L690L"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9424828	TGC	synonymous	NA	NA	NA	NA
M1	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	194	81	10	0.12345679	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999904	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Vardict	2	0.248	13	13	4	0.307692308	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9236512	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	88	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.9651371	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	66	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.8378159	CAC	synonymous	NA	NA	NA	NA
M1	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	62	25	3	0.12	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CAT	synonymous	NA	NA	NA	NA
M1	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.241	58	181	44	0.243093923	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	32710556	12A2p6	cell line	sgMsh2	32710556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	166	160	28	0.175	exonic	Cdk9	synonymous SNV	Cdk9:NM_130860:exon3:c.A186G:p.T62T	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999611	CTG	synonymous	NA	NA	NA	NA
M1	chr2	32747032	12A2p6	cell line	sgMsh2	32747032	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	163	3	0	0	exonic	Sh2d3c	nonsynonymous SNV	"Sh2d3c:NM_001252547:exon5:c.C679T:p.P227S,Sh2d3c:NM_013781:exon6:c.C1135T:p.P379S"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9998294	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	150	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	71	34	7	0.205882353	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	GAG	synonymous	NA	NA	NA	NA
M1	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	45	34	6	0.176470588	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.8303185	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M1	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	73	69	9	0.130434783	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9959299	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	36640083	12A2p6	cell line	sgMsh2	36640083	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	231	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.C43A:p.L15M	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999985	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	36688308	12A2p6	cell line	sgMsh2	36688308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	283	0	0	NA	exonic	Olfr346	nonsynonymous SNV	Olfr346:NM_146938:exon1:c.A305G:p.Y102C	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8480093	TAT	nonsynonymous	T	5	TTTTT	NA
M1	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	110	69	16	0.231884058	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9352578	AAC	nonsynonymous	A	5	AAAAA	NA
M1	chr2	39204849	12A2p6	cell line	sgMsh2	39204849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	135	165	37	0.224242424	exonic	Ppp6c	nonsynonymous SNV	Ppp6c:NM_024209:exon4:c.G363T:p.Q121H	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	132	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.223	125	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M1	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	91	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9955855	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M1	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	56	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.09398404	GTG	synonymous	NA	NA	NA	NA
M1	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	65	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	GAG	synonymous	NA	NA	NA	NA
M1	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	95	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	GAT	synonymous	NA	NA	NA	NA
M1	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	63	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	95	219	51	0.232876712	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	AAA	synonymous	A	5	AAAAA	NA
M1	chr2	52258109	12A2p6	cell line	sgMsh2	52258109	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.249	123	0	0	NA	exonic	Neb	frameshift insertion	Neb:NM_010889:exon58:c.8123dupA:p.N2708Kfs*1	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAT	frameshift	T	5	TTTTT	1
M1	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	238	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	58014983	12A2p6	cell line	sgMsh2	58014983	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	56	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon2:c.G1557T:p.K519N	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9888959	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	62	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	113	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9974848	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	43	113	18	0.159292035	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr2	60534818	12A2p6	cell line	sgMsh2	60534818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	173	3	0	0	exonic	Pla2r1	nonsynonymous SNV	Pla2r1:NM_008867:exon2:c.T407C:p.V136A	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	162	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	ACT	synonymous	NA	NA	NA	NA
M1	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	105	2	0	0	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M1	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	136	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	GTT	synonymous	NA	NA	NA	NA
M1	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.28	135	5	1	0.2	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.258	135	5	1	0.2	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M1	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	122	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	237	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr2	67515274	12A2p6	cell line	sgMsh2	67515274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	123	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7858G:p.T2620A,Xirp2:NM_001083919:exon7:c.A7858G:p.T2620A"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	208	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999952	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	214	2	0	0	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999965	TAT	synonymous	NA	NA	NA	NA
M1	chr2	72946658	12A2p6	cell line	sgMsh2	72946658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	128	232	44	0.189655172	exonic	Sp3	nonsynonymous SNV	"Sp3:NM_001098425:exon3:c.A1525G:p.T509A,Sp3:NM_001018042:exon5:c.A1726G:p.T576A"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997395	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	26	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	87	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	AGC	synonymous	NA	NA	NA	NA
M1	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	123	38	0.308943089	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9990791	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr2	76744385	12A2p6	cell line	sgMsh2	76744385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	224	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A51182G:p.N17061S,Ttn:NM_011652:exon275:c.A70925G:p.N23642S,Ttn:NM_001385708:exon312:c.A76757G:p.N25586S"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999979	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr2	76757205	12A2p6	cell line	sgMsh2	76757205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	159	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon145:c.A39562G:p.T13188A,Ttn:NM_011652:exon266:c.A59305G:p.T19769A,Ttn:NM_001385708:exon303:c.A65137G:p.T21713A"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	2	0.5815989	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	76796437	12A2p6	cell line	sgMsh2	76796437	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	125	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon79:c.A19481C:p.E6494A,Ttn:NM_011652:exon200:c.A39224C:p.E13075A,Ttn:NM_001385708:exon237:c.A45056C:p.E15019A"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9994898	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	76894348	12A2p6	cell line	sgMsh2	76894348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	133	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon66:c.A16319G:p.K5440R,Ttn:NM_001385708:exon68:c.A19376G:p.K6459R"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9997035	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	76908791	12A2p6	cell line	sgMsh2	76908791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	95	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon45:c.G11403T:p.K3801N,Ttn:NM_001385708:exon47:c.G11916T:p.K3972N"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	123	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	152	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999216	TAT	synonymous	NA	NA	NA	NA
M1	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	82	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.9330802	CTA	synonymous	NA	NA	NA	NA
M1	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	180	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.999829	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	706	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	1.33E-09	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M1	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	210	3	1	0.333333333	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9984632	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	104	140	30	0.214285714	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.685872263	2	0.9217925	TTG	synonymous	NA	NA	NA	NA
M1	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	216	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	2	0.999388	GTG	synonymous	NA	NA	NA	NA
M1	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	402	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999999	AGG	synonymous	NA	NA	NA	NA
M1	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	303	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.787358	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	244	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	2	0.5500456	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	346	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	0.9861021	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr2	86171105	12A2p6	cell line	sgMsh2	86171105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	189	0	0	NA	exonic	Olfr1044	synonymous SNV	Olfr1044:NM_147011:exon1:c.T711G:p.A237A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999877	AAG	synonymous	NA	NA	NA	NA
M1	chr2	86198386	12A2p6	cell line	sgMsh2	86198386	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	449	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.G365A:p.R122H	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	1.45E-09	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	321	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.9514973	AAA	synonymous	NA	NA	NA	NA
M1	chr2	86850868	12A2p6	cell line	sgMsh2	86850868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	192	0	0	NA	exonic	Olfr1095	nonsynonymous SNV	Olfr1095:NM_146730:exon1:c.A829G:p.T277A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	2	0.9871093	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	157	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	2	0.9985494	AAA	nonsynonymous	A	6	AAAAAA	NA
M1	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	252	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.531437449	2	0.9983456	TAG	synonymous	NA	NA	NA	NA
M1	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	255	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	2	0.9999701	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr2	87545195	12A2p6	cell line	sgMsh2	87545195	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	360	0	0	NA	exonic	Olfr1128	synonymous SNV	Olfr1128:NM_146349:exon1:c.T348G:p.A116A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	3.14E-09	CAG	synonymous	NA	NA	NA	NA
M1	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	249	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.690414464	2	0.9997118	AGG	synonymous	NA	NA	NA	NA
M1	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.179	408	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	NA	NA	CAT	frameshift	NA	NA	NA	1
M1	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	422	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.572317253	2	2.74E-08	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	223	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9999425	AAT	synonymous	NA	NA	NA	NA
M1	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	368	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.999971	TAC	synonymous	TACT	8	TACTTACT	NA
M1	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	359	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	2	0.9993528	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	217	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717667666	2	0.9941971	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	315	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9999713	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	517	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9872647	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	252	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.9734804	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	398	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	0.9999965	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	250	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.6012102	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr2	88034589	12A2p6	cell line	sgMsh2	88034589	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	118	0	0	NA	exonic	Olfr73	synonymous SNV	Olfr73:NM_054090:exon1:c.C549A:p.S183S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9994853	AGG	synonymous	NA	NA	NA	NA
M1	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	495	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.581401654	2	1.22E-09	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr2	88224667	12A2p6	cell line	sgMsh2	88224667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	543	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.T364C:p.Y122H	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	340	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.995954	CTG	synonymous	NA	NA	NA	NA
M1	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	157	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.9300537	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M1	chr2	88486943	12A2p6	cell line	sgMsh2	88486943	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	362	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.C210A:p.F70L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617739257	2	2.45E-09	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	147	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.549606251	2	0.9974948	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	272	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	0.9752899	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	519	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	2	4.53E-08	CTA	synonymous	ACT	8	ACTACTAC	NA
M1	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	379	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.944712	AGG	synonymous	NA	NA	NA	NA
M1	chr2	88973366	12A2p6	cell line	sgMsh2	88973366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	345	0	0	NA	exonic	Olfr1213	frameshift deletion	Olfr1213:NM_146898:exon3:c.524delA:p.H175Lfs*9	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	NA	NA	ATG	frameshift	A	6	AAAAAA	-1
M1	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	269	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.9814874	TAA	synonymous	NA	NA	NA	NA
M1	chr2	89055081	12A2p6	cell line	sgMsh2	89055081	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	324	0	0	NA	exonic	Olfr1218	nonsynonymous SNV	Olfr1218:NM_146818:exon1:c.C344T:p.A115V	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	2	0.9999666	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	178	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999787	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	312	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999933	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	89528058	12A2p6	cell line	sgMsh2	89528058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	313	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.C351A:p.A117A	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	2	0.8331714	AGG	synonymous	NA	NA	NA	NA
M1	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	241	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9998423	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	220	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.6417173	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M1	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	253	153	20	0.130718954	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	2	0.9504978	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	273	581	90	0.154905336	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	0.9757744	TTG	synonymous	NA	NA	NA	NA
M1	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	299	67	23	0.343283582	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	5.10E-08	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	91169815	12A2p6	cell line	sgMsh2	91169815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	47	3	0.063829787	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon9:c.A1745G:p.Y582C,Madd:NM_001177719:exon10:c.A1745G:p.Y582C,Madd:NM_145527:exon10:c.A1745G:p.Y582C"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9676595	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	284	67	9	0.134328358	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	2	0.7838396	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	195	48	3	0.0625	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9999841	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	97630251	12A2p6	cell line	sgMsh2	97630251	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	130	0	0	NA	exonic	Lrrc4c	synonymous SNV	"Lrrc4c:NM_001289744:exon2:c.C1221T:p.S407S,Lrrc4c:NM_178725:exon3:c.C1221T:p.S407S,Lrrc4c:NM_001363049:exon4:c.C1221T:p.S407S,Lrrc4c:NM_001289743:exon7:c.C1221T:p.S407S,Lrrc4c:NM_001289742:exon8:c.C1221T:p.S407S,Lrrc4c:NM_001363048:exon8:c.C1221T:p.S407S,Lrrc4c:NM_001363047:exon9:c.C1221T:p.S407S"	2qE1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	GCG	synonymous	NA	NA	NA	NA
M1	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	221	107	23	0.214953271	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9876206	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	103279747	12A2p6	cell line	sgMsh2	103279747	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	56	71	6	0.084507042	exonic	Ehf	frameshift deletion	Ehf:NM_007914:exon3:c.114delT:p.F38Lfs*30	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr2	105842294	12A2p6	cell line	sgMsh2	105842294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	143	40	8	0.2	exonic	Elp4	nonsynonymous SNV	Elp4:NM_023876:exon4:c.A445G:p.T149A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	216	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr2	107296108	12A2p6	cell line	sgMsh2	107296108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	141	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A1186G:p.S396G	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	111190395	12A2p6	cell line	sgMsh2	111190395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	107	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon17:c.1483delT:p.S495Lfs*11	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr2	111231096	12A2p6	cell line	sgMsh2	111231096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	192	0	0	NA	exonic	Olfr1275	synonymous SNV	Olfr1275:NM_001011795:exon1:c.T696C:p.S232S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999858	AAC	synonymous	NA	NA	NA	NA
M1	chr2	111335393	12A2p6	cell line	sgMsh2	111335393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	513	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C684A:p.R228R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M1	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.236	577	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	520	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M1	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	342	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.81E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M1	chr2	111379900	12A2p6	cell line	sgMsh2	111379900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	192	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.A899G:p.K300R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999894	AAG	nonsynonymous	A	5	AAAAA	NA
M1	chr2	111479432	12A2p6	cell line	sgMsh2	111479432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	229	0	0	NA	exonic	Olfr1288	nonsynonymous SNV	Olfr1288:NM_146400:exon1:c.C647T:p.T216I	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999983	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	198	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	220	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999974	AAT	synonymous	NA	NA	NA	NA
M1	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	236	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	237	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	112008810	12A2p6	cell line	sgMsh2	112008810	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	183	0	0	NA	exonic	Olfr1310	synonymous SNV	Olfr1310:NM_146449:exon1:c.C375A:p.A125A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999834	TGG	synonymous	NA	NA	NA	NA
M1	chr2	112480011	12A2p6	cell line	sgMsh2	112480011	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	112	0	0	NA	exonic	Chrm5	nonsynonymous SNV	Chrm5:NM_205783:exon1:c.C759A:p.F253L	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	AGA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
M1	chr2	112733018	12A2p6	cell line	sgMsh2	112733018	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	134	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon62:c.A8761G:p.T2921A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	116	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	AAC	nonsynonymous	A	5	AAAAA	NA
M1	chr2	114118768	12A2p6	cell line	sgMsh2	114118768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	53	118	33	0.279661017	exonic	Aqr	nonsynonymous SNV	"Aqr:NM_001290788:exon26:c.A2948G:p.Q983R,Aqr:NM_009702:exon26:c.A2948G:p.Q983R"	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	114195609	12A2p6	cell line	sgMsh2	114195609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	126	57	13	0.228070175	exonic	Zfp770	synonymous SNV	Zfp770:NM_175466:exon2:c.T1978C:p.L660L	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AAA	synonymous	NA	NA	NA	NA
M1	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	123	37	15	0.405405405	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr2	114568021	12A2p6	cell line	sgMsh2	114568021	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	65	64	14	0.21875	exonic	Dph6	nonsynonymous SNV	"Dph6:NM_001356438:exon5:c.T404G:p.L135R,Dph6:NM_001356439:exon5:c.T404G:p.L135R,Dph6:NM_025675:exon5:c.T404G:p.L135R"	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	178	147	26	0.176870748	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999787	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	95	72	22	0.305555556	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CAC	synonymous	NA	NA	NA	NA
M1	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.162	37	3	2	0.666666667	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	1	0.7003826	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.42	101	32	2	0.0625	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M1	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	53	16	0	0	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	TAT	synonymous	NA	NA	NA	NA
M1	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	51	47	6	0.127659574	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	40	15	4	0.266666667	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	119774213	12A2p6	cell line	sgMsh2	119774213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	86	13	0	0	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon10:c.G1213T:p.G405W,Rpap1:NM_177294:exon11:c.G1213T:p.G405W"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	81	43	11	0.255813953	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9713952	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M1	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	96	108	0	0	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	212	112	26	0.232142857	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.9954965	AAC	synonymous	NA	NA	NA	NA
M1	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	61	13	4	0.307692308	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.983364	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	134	18	7	0.388888889	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	75	52	13	0.25	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	30	11	0.366666667	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.251	44	24	8	0.333333333	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	GTT	synonymous	NA	NA	NA	NA
M1	chr2	122798101	12A2p6	cell line	sgMsh2	122798101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	107	134	26	0.194029851	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon5:c.G523A:p.V175M,Sqor:NM_021507:exon5:c.G523A:p.V175M"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9853073	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	79	1	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	TCC	nonsynonymous	NA	NA	NA	NA
M1	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	62	4	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	14	1	0.071428571	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	ATA	synonymous	NA	NA	NA	NA
M1	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	80	3	0.0375	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999419	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	97	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9985756	TTA	synonymous	NA	NA	NA	NA
M1	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	153	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999254	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	142	7	1	0.142857143	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998707	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	117	63	13	0.206349206	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	GTA	synonymous	NA	NA	NA	NA
M1	chr2	129474620	12A2p6	cell line	sgMsh2	129474620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	119	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon2:c.T168C:p.C56C,F830045P16Rik:NM_177653:exon2:c.T168C:p.C56C"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722209866	2	0.8616774	TAC	synonymous	NA	NA	NA	NA
M1	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.219	164	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr2	130422080	12A2p6	cell line	sgMsh2	130422080	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	112	43	12	0.279069767	exonic	Pced1a	synonymous SNV	"Pced1a:NM_178762:exon5:c.C651T:p.S217S,Pced1a:NM_001114541:exon6:c.C651T:p.S217S"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9847471	CGC	synonymous	NA	NA	NA	NA
M1	chr2	130576734	12A2p6	cell line	sgMsh2	130576734	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	40	0	0	NA	exonic	Oxt	synonymous SNV	Oxt:NM_011025:exon2:c.C264T:p.G88G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9444978	GCC	synonymous	NA	NA	NA	NA
M1	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	92	12	1	0.083333333	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	94	15	4	0.266666667	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9927118	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	130635857	12A2p6	cell line	sgMsh2	130635857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	26	8	3	0.375	exonic	Lzts3	synonymous SNV	"Lzts3:NM_001291027:exon4:c.A1320G:p.Q440Q,Lzts3:NM_001291028:exon4:c.A978G:p.Q326Q,Lzts3:NM_197945:exon4:c.A1320G:p.Q440Q"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	GTT	synonymous	NA	NA	NA	NA
M1	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	88	82	15	0.182926829	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	51	85	15	0.176470588	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	ATT	synonymous	NA	NA	NA	NA
M1	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	64	22	0.34375	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9500227	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	81	1	0	0	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	128	33	6	0.181818182	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.8318926	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	58	77	18	0.233766234	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr2	134643895	12A2p6	cell line	sgMsh2	134643895	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	25	8	1	0.125	exonic	Tmx4	synonymous SNV	Tmx4:NM_029148:exon1:c.C111A:p.P37P	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.68E-06	TGG	synonymous	NA	NA	NA	NA
M1	chr2	135294969	12A2p6	cell line	sgMsh2	135294969	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	149	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon10:c.A983C:p.N328T,Plcb1:NM_019677:exon10:c.A983C:p.N328T"	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	140129202	12A2p6	cell line	sgMsh2	140129202	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.314	147	59	0	0	exonic	Esf1	frameshift insertion	Esf1:NM_001081090:exon11:c.2017dupA:p.I673Nfs*21	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAT	frameshift	T	8	TTTTTTTT	1
M1	chr2	142712797	12A2p6	cell line	sgMsh2	142712797	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	68	45	15	0.333333333	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon19:c.A2080C:p.R694R,Kif16b:NM_001355123:exon20:c.A2113C:p.R705R"	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9831377	CTC	synonymous	CTG	8	CTGCTGCT	NA
M1	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	51	1	0	0	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9804653	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	47	2	1	0.5	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	48	184	42	0.22826087	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	1	0.7181535	AAG	synonymous	NA	NA	NA	NA
M1	chr2	152736474	12A2p6	cell line	sgMsh2	152736474	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	39	143	27	0.188811189	exonic	Id1	nonsynonymous SNV	"Id1:NM_001355113:exon1:c.G134T:p.R45L,Id1:NM_001369018:exon1:c.G134T:p.R45L,Id1:NM_010495:exon1:c.G134T:p.R45L"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	105	206	56	0.27184466	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	CTG	synonymous	NA	NA	NA	NA
M1	chr2	153232546	12A2p6	cell line	sgMsh2	153232546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	72	40	9	0.225	exonic	Plagl2	nonsynonymous SNV	Plagl2:NM_018807:exon3:c.A434G:p.H145R	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	106	12	3	0.25	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	GCT	synonymous	NA	NA	NA	NA
M1	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	66	497	131	0.263581489	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M1	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1964	112	240	0	0	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.892088162	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M1	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	137	47	0.343065693	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	ATA	synonymous	NA	NA	NA	NA
M1	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	24	38	8	0.210526316	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9173263	GTT	synonymous	NA	NA	NA	NA
M1	chr2	155799841	12A2p6	cell line	sgMsh2	155799841	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	142	6	1	0.166666667	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon4:c.C588A:p.F196L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998707	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	155831048	12A2p6	cell line	sgMsh2	155831048	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	90	0	0	NA	exonic	Fam83c	nonsynonymous SNV	Fam83c:NM_027788:exon3:c.G650A:p.R217Q	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	58	1	1	1	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.135	108	99	29	0.292929293	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.613197056	2	0.9925186	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	20	5	1	0.2	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.8855839	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	359	131	25	0.190839695	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.48E-09	TAT	synonymous	NA	NA	NA	NA
M1	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	141	36	10	0.277777778	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M1	chr2	158043501	12A2p6	cell line	sgMsh2	158043501	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	108	30	7	0.233333333	exonic	Rprd1b	nonsynonymous SNV	"Rprd1b:NM_001291134:exon3:c.A377G:p.K126R,Rprd1b:NM_001291135:exon3:c.A377G:p.K126R,Rprd1b:NM_027434:exon3:c.A377G:p.K126R"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.6845736	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	84	48	12	0.25	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976489	GCG	synonymous	NA	NA	NA	NA
M1	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	113	84	30	0.357142857	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	9.09E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	5	0	0	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.7904405	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	165	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999591	AGC	synonymous	NA	NA	NA	NA
M1	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	186	61	15	0.245901639	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M1	chr2	164032567	12A2p6	cell line	sgMsh2	164032567	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	57	1	0	0	exonic	Pabpc1l	synonymous SNV	Pabpc1l:NM_001114079:exon5:c.T723C:p.H241H	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.576859453	2	0.009838185	ATG	synonymous	NA	NA	NA	NA
M1	chr2	164488344	12A2p6	cell line	sgMsh2	164488344	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	174	87	18	0.206896552	exonic	Dbndd2	nonsynonymous SNV	"Dbndd2:NM_001048229:exon1:c.A95C:p.E32A,Dbndd2:NM_001048227:exon2:c.A95C:p.E32A,Dbndd2:NM_001048228:exon2:c.A95C:p.E32A,Dbndd2:NM_026797:exon2:c.A95C:p.E32A"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999739	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	198	299	72	0.240802676	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	14	2	2	1	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9271657	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	65	40	8	0.2	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	1	0.5026704	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr2	168935270	12A2p6	cell line	sgMsh2	168935270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	57	29	11	0.379310345	exonic	Zfp64	nonsynonymous SNV	"Zfp64:NM_001369059:exon5:c.T698C:p.I233T,Zfp64:NM_009564:exon5:c.T698C:p.I233T"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	116	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr2	172432369	12A2p6	cell line	sgMsh2	172432369	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	85	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001276422:exon6:c.G2069A:p.G690D,Cass4:NM_001276423:exon6:c.G2063A:p.G688D,Cass4:NM_001080820:exon7:c.G2141A:p.G714D,Cass4:NM_001379465:exon7:c.G2147A:p.G716D,Cass4:NM_001379466:exon7:c.G2144A:p.G715D,Cass4:NM_001379467:exon7:c.G2138A:p.G713D"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	117	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	80	3	3	1	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	68	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	31	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9262004	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	82	19	4	0.210526316	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	CTA	synonymous	NA	NA	NA	NA
M1	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	78	19	0.243589744	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	94	76	16	0.210526316	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	65	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	0.6630779	GCT	synonymous	NA	NA	NA	NA
M1	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	54	22	6	0.272727273	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9358201	ATG	synonymous	NA	NA	NA	NA
M1	chr2	181424252	12A2p6	cell line	sgMsh2	181424252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	77	0	0	NA	exonic	Zbtb46	nonsynonymous SNV	"Zbtb46:NM_027656:exon1:c.T104C:p.V35A,Zbtb46:NM_028125:exon2:c.T104C:p.V35A"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9258849	GAC	nonsynonymous	ACGC	9	ACGCACGCA	NA
M1	chr2	181596834	12A2p6	cell line	sgMsh2	181596834	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	56	16	0	0	exonic	Samd10	frameshift deletion	"Samd10:NM_001370751:exon4:c.532delC:p.Q178Kfs*23,Samd10:NM_172676:exon4:c.499delC:p.Q167Kfs*23"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M1	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	81	81	23	0.283950617	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	ATC	nonsynonymous	A	5	AAAAA	NA
M1	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	174	15	1	0.066666667	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9997297	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	95	16	3	0.1875	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M1	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	126	26	10	0.384615385	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	9699537	12A2p6	cell line	sgMsh2	9699537	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	60	6	4	0.666666667	exonic	Pag1	synonymous SNV	"Pag1:NM_053182:exon6:c.A555C:p.T185T,Pag1:NM_001195031:exon7:c.A555C:p.T185T"	3qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M1	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	120	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	181	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999816	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	96	22	8	0.363636364	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	AAG	synonymous	NA	NA	NA	NA
M1	chr3	15548855	12A2p6	cell line	sgMsh2	15548855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	342	0	0	NA	exonic	Sirpb1b	nonsynonymous SNV	Sirpb1b:NM_001173460:exon2:c.T166C:p.S56P	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	2	0.7355842	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	95	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr3	19144391	12A2p6	cell line	sgMsh2	19144391	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	170	131	9	0.06870229	exonic	Armc1	frameshift deletion	"Armc1:NM_001357689:exon4:c.404delT:p.L135Wfs*10,Armc1:NM_028840:exon4:c.404delT:p.L135Wfs*10"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	116	21	6	0.285714286	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	ACA	synonymous	NA	NA	NA	NA
M1	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	92	92	19	0.206521739	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	AAT	nonsynonymous	A	5	AAAAA	NA
M1	chr3	28099736	12A2p6	cell line	sgMsh2	28099736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	76	31	4	0.129032258	exonic	Pld1	nonsynonymous SNV	"Pld1:NM_008875:exon20:c.T2303C:p.L768P,Pld1:NM_001164056:exon21:c.T2303C:p.L768P,Pld1:NM_001368667:exon21:c.T2417C:p.L806P"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	220	16	8	0.5	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9983509	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr3	30598185	12A2p6	cell line	sgMsh2	30598185	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	103	0	0	NA	exonic	Actrt3	nonsynonymous SNV	Actrt3:NM_029690:exon2:c.G759T:p.E253D	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	144	128	37	0.2890625	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999883	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	57	1	0	0	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8606622	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	36180189	12A2p6	cell line	sgMsh2	36180189	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	139	0	0	NA	exonic	Qrfpr	frameshift deletion	Qrfpr:NM_198192:exon6:c.1002delT:p.F334fs*0	3qB	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	TTCA	9	TTCATTCAT	-1
M1	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	118	102	13	0.12745098	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	TTG	synonymous	NA	NA	NA	NA
M1	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	207	32	11	0.34375	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999995	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr3	37065134	12A2p6	cell line	sgMsh2	37065134	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	123	0	0	NA	exonic	Adad1	frameshift deletion	Adad1:NM_009350:exon3:c.363delA:p.K123Nfs*6	3qB	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	120	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	TGC	synonymous	NA	NA	NA	NA
M1	chr3	49745073	12A2p6	cell line	sgMsh2	49745073	T	-	Deletion	Strelka2;Vardict	2	0.2294	109	0	0	NA	exonic	Pcdh18	frameshift deletion	Pcdh18:NM_130448:exon4:c.2939delA:p.K980Rfs*27	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1	chr3	49755889	12A2p6	cell line	sgMsh2	49755889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	252	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.G976T:p.A326S	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.999992	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	53517015	12A2p6	cell line	sgMsh2	53517015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	145	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon24:c.A9000G:p.I3000M	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	GTA	nonsynonymous	TGTA	8	TGTATGTA	NA
M1	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	116	59	12	0.203389831	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	108	123	28	0.227642276	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	54794243	12A2p6	cell line	sgMsh2	54794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	120	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.T904C:p.Y302H	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	150	112	30	0.267857143	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	82	115	20	0.173913043	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	52	14	7	0.5	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9419423	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M1	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	182	26	1	0.038461538	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9999769	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	167	36	6	0.166666667	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999963	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	75	244	5	0.020491803	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr3	59252205	12A2p6	cell line	sgMsh2	59252205	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	130	0	0	NA	exonic	Med12l	nonsynonymous SNV	Med12l:NM_177855:exon26:c.A3674G:p.K1225R	3qD	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	138	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998421	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	40	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9741261	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr3	64126612	12A2p6	cell line	sgMsh2	64126612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	167	0	0	NA	exonic	Vmn2r2	synonymous SNV	"Vmn2r2:NM_001104592:exon3:c.C1236T:p.I412I,Vmn2r2:NM_001385025:exon4:c.C1488T:p.I496I"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999963	GGA	synonymous	NA	NA	NA	NA
M1	chr3	64407011	12A2p6	cell line	sgMsh2	64407011	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	232	0	0	NA	exonic	Vmn2r4	nonsynonymous SNV	"Vmn2r4:NM_001104615:exon2:c.C281A:p.S94Y,Vmn2r4:NM_001385080:exon3:c.C554A:p.S185Y"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9994875	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr3	67596713	12A2p6	cell line	sgMsh2	67596713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	125	89	14	0.157303371	exonic	Mfsd1	nonsynonymous SNV	Mfsd1:NM_025813:exon11:c.T1037C:p.M346T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	215	36	8	0.222222222	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999967	CTG	synonymous	NA	NA	NA	NA
M1	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	38	6	0.157894737	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	69016773	12A2p6	cell line	sgMsh2	69016773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	203	269	61	0.226765799	exonic	Smc4	nonsynonymous SNV	"Smc4:NM_001356976:exon7:c.A758G:p.Y253C,Smc4:NM_133786:exon7:c.A968G:p.Y323C"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.7716724	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	95	271	0	0	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	188	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999871	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr3	76707951	12A2p6	cell line	sgMsh2	76707951	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	120	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon16:c.C2318T:p.S773F,Fstl5:NM_178673:exon16:c.C2318T:p.S773F"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.7608255	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	79618867	12A2p6	cell line	sgMsh2	79618867	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	113	65	15	0.230769231	exonic	Etfdh	nonsynonymous SNV	Etfdh:NM_025794:exon4:c.A456C:p.K152N	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	74	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	189	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999877	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	86	3	0	0	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	205	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999945	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr3	83065924	12A2p6	cell line	sgMsh2	83065924	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	124	108	1	0.009259259	exonic	Plrg1	frameshift deletion	Plrg1:NM_016784:exon7:c.535delA:p.A181Pfs*46	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr3	83070683	12A2p6	cell line	sgMsh2	83070683	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	91	156	3	0.019230769	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon13:c.A1235C:p.N412T	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9972685	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	83767000	12A2p6	cell line	sgMsh2	83767000	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	36	0	0	NA	exonic	Sfrp2	frameshift deletion	Sfrp2:NM_009144:exon1:c.459delC:p.L155Sfs*41	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1	chr3	83922987	12A2p6	cell line	sgMsh2	83922987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	61	23	2	0.086956522	exonic	Tmem131l	nonsynonymous SNV	Tmem131l:NM_172681:exon24:c.A2747G:p.N916S	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	83938699	12A2p6	cell line	sgMsh2	83938699	T	-	Deletion	Strelka2;Vardict	2	0.1978	91	15	0	0	exonic	Tmem131l	frameshift deletion	Tmem131l:NM_172681:exon12:c.1107delA:p.A370Lfs*28	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.898447243	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M1	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	147	25	6	0.24	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9998139	AAT	synonymous	NA	NA	NA	NA
M1	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	182	34	7	0.205882353	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999825	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M1	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	170	31	11	0.35483871	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999682	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	66	5	0	0	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9909792	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	89142439	12A2p6	cell line	sgMsh2	89142439	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	201	44	14	0.318181818	exonic	Pklr	nonsynonymous SNV	"Pklr:NM_001099779:exon6:c.A835T:p.I279F,Pklr:NM_013631:exon6:c.A928T:p.I310F"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999933	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M1	chr3	89218045	12A2p6	cell line	sgMsh2	89218045	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.264	124	21	0	0	exonic	Thbs3	frameshift insertion	Thbs3:NM_013691:exon4:c.562dupA:p.I189Nfs*14	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGA	frameshift	NA	NA	NA	1
M1	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	50	82	21	0.256097561	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	81	43	8	0.186046512	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9282682	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr3	89954524	12A2p6	cell line	sgMsh2	89954524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	20	6	0.3	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon9:c.T721C:p.F241L,Atp8b2:NM_001081182:exon10:c.T664C:p.F222L"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	90065588	12A2p6	cell line	sgMsh2	90065588	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	92	19	4	0.210526316	exonic	1700094D03Rik	nonsynonymous SNV	1700094D03Rik:NM_028567:exon4:c.G283T:p.A95S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9742033	AGC	nonsynonymous	T	5	TTTTT	NA
M1	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	58	505	145	0.287128713	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	193	51	11	0.215686275	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	AGC	synonymous	NA	NA	NA	NA
M1	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	159	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999448	TCA	nonsynonymous	NA	NA	NA	NA
M1	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	240	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9999668	TAC	synonymous	NA	NA	NA	NA
M1	chr3	93471188	12A2p6	cell line	sgMsh2	93471188	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	89	0	0	NA	exonic	Tchhl1	frameshift deletion	Tchhl1:NM_027762:exon3:c.1198delA:p.K401Rfs*117	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr3	94489580	12A2p6	cell line	sgMsh2	94489580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	50	0	0	NA	exonic	Celf3	synonymous SNV	"Celf3:NM_001357787:exon9:c.T846C:p.D282D,Celf3:NM_001379256:exon11:c.T1239C:p.D413D,Celf3:NM_001289613:exon12:c.T1467C:p.D489D,Celf3:NM_001289620:exon12:c.T1095C:p.D365D,Celf3:NM_001357784:exon12:c.T1383C:p.D461D,Celf3:NM_001379255:exon12:c.T1098C:p.D366D,Celf3:NM_172434:exon12:c.T1380C:p.D460D,Celf3:NM_001289616:exon13:c.T1152C:p.D384D,Celf3:NM_001357785:exon13:c.T1239C:p.D413D,Celf3:NM_001357786:exon13:c.T1155C:p.D385D,Celf3:NM_001379249:exon13:c.T1467C:p.D489D,Celf3:NM_001379250:exon13:c.T1380C:p.D460D,Celf3:NM_001379251:exon13:c.T1236C:p.D412D,Celf3:NM_001379252:exon13:c.T1239C:p.D413D,Celf3:NM_001379253:exon13:c.T1155C:p.D385D,Celf3:NM_001379254:exon13:c.T1152C:p.D384D"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	1	0.6966132	ATG	synonymous	NA	NA	NA	NA
M1	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	232	148	36	0.243243243	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	GTG	synonymous	NA	NA	NA	NA
M1	chr3	94885727	12A2p6	cell line	sgMsh2	94885727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	118	566	110	0.19434629	exonic	Psmb4	nonsynonymous SNV	Psmb4:NM_008945:exon4:c.T509C:p.V170A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	66	47	9	0.191489362	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CTT	nonsynonymous	T	5	TTTTT	NA
M1	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	74	108	12	0.111111111	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.995665	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	90	274	71	0.259124088	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	197	120	25	0.208333333	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.998423	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	201	127	30	0.236220472	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9437479	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	95835683	12A2p6	cell line	sgMsh2	95835683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	173	95	20	0.210526316	exonic	Prpf3	nonsynonymous SNV	"Prpf3:NM_001316751:exon11:c.T1487C:p.V496A,Prpf3:NM_027541:exon11:c.T1487C:p.V496A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	0.7699051	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	103	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	120	53	8	0.150943396	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	10	2	0	0	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	116	1	0	0	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	AAG	synonymous	NA	NA	NA	NA
M1	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	107	6	1	0.166666667	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9927078	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	158	8	5	0.625	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9999089	AGT	synonymous	NA	NA	NA	NA
M1	chr3	97912727	12A2p6	cell line	sgMsh2	97912727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	104	209	33	0.157894737	exonic	Sec22b	nonsynonymous SNV	Sec22b:NM_011342:exon3:c.T334C:p.F112L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	98810942	12A2p6	cell line	sgMsh2	98810942	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	218	0	0	NA	exonic	Hsd3b6	synonymous SNV	Hsd3b6:NM_013821:exon2:c.G105T:p.L35L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.999276	CCA	synonymous	NA	NA	NA	NA
M1	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	82	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	CTT	synonymous	NA	NA	NA	NA
M1	chr3	100027194	12A2p6	cell line	sgMsh2	100027194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	49	0	0	NA	exonic	Spag17	synonymous SNV	Spag17:NM_028892:exon14:c.A1791G:p.R597R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	GAG	synonymous	NA	NA	NA	NA
M1	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	88	1	0	0	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr3	101007941	12A2p6	cell line	sgMsh2	101007941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	158	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon7:c.A2321G:p.Y774C	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999419	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	2	0	0	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	295	191	63	0.329842932	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	36	11	1	0.090909091	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	98	1	1	1	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9106124	GGA	synonymous	NA	NA	NA	NA
M1	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	104	60	15	0.25	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	217	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999997	CTG	nonsynonymous	C	5	CCCCC	NA
M1	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	102	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	106115283	12A2p6	cell line	sgMsh2	106115283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	111	0	0	NA	exonic	Chia1	nonsynonymous SNV	Chia1:NM_023186:exon3:c.T172C:p.F58L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	132	14	6	0.428571429	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	124	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	GCT	synonymous	NA	NA	NA	NA
M1	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.2212	113	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M1	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	43	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	107614596	12A2p6	cell line	sgMsh2	107614596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	87	61	9	0.147540984	exonic	Strip1	synonymous SNV	Strip1:NM_153563:exon20:c.T2265C:p.N755N	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9773491	CAT	synonymous	NA	NA	NA	NA
M1	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	137	23	2	0.086956522	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9992717	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	31	11	3	0.272727273	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	89	7	3	0.428571429	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9846639	CTG	synonymous	NA	NA	NA	NA
M1	chr3	108427335	12A2p6	cell line	sgMsh2	108427335	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	32	975	247	0.253333333	exonic	Sars	nonsynonymous SNV	"Sars:NM_001204979:exon10:c.T1312A:p.C438S,Sars:NM_011319:exon11:c.T1384A:p.C462S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9569947	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	80	22	2	0.090909091	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9967563	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	64	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.973308	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	114061524	12A2p6	cell line	sgMsh2	114061524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	119	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon3:c.A432C:p.K144N	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995913	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	114061537	12A2p6	cell line	sgMsh2	114061537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	121	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon3:c.A445G:p.N149D	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996303	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	115122665	12A2p6	cell line	sgMsh2	115122665	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	171	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.A1146C:p.K382N,Olfm3:NM_153157:exon6:c.A1245C:p.K415N,Olfm3:NM_153458:exon6:c.A1185C:p.K395N"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999697	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	90	173	41	0.23699422	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9761464	CCT	synonymous	NA	NA	NA	NA
M1	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	40	41	8	0.195121951	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	126	1	0	0	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	125	34	7	0.205882353	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	79	28	0.35443038	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	117671976	12A2p6	cell line	sgMsh2	117671976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	142	0	0	NA	exonic	Plppr5	nonsynonymous SNV	"Plppr5:NM_001305451:exon5:c.T875C:p.M292T,Plppr5:NM_029425:exon5:c.T875C:p.M292T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9960929	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr3	119427246	12A2p6	cell line	sgMsh2	119427246	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	245	1	0	0	exonic	Dpyd	nonsynonymous SNV	Dpyd:NM_170778:exon22:c.T2865A:p.N955K	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	138	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.8051949	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	123479673	12A2p6	cell line	sgMsh2	123479673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	154	1	0	0	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon4:c.A917G:p.N306S	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	101	2	2	1	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9310542	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	125609527	12A2p6	cell line	sgMsh2	125609527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	107	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon5:c.C1282T:p.P428S	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992552	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	132	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.9097941	CGA	synonymous	NA	NA	NA	NA
M1	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	127	7	4	0.571428571	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	CAC	synonymous	NA	NA	NA	NA
M1	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	162	32	3	0.09375	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	89	3	0	0	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981685	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	166	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9993001	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	136	118	22	0.186440678	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9984452	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	149	218	55	0.252293578	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	ATG	synonymous	NA	NA	NA	NA
M1	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	123	24	9	0.375	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	TAC	synonymous	NA	NA	NA	NA
M1	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	133	73	0	0	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9970849	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr3	135626634	12A2p6	cell line	sgMsh2	135626634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	104	104	22	0.211538462	exonic	Nfkb1	nonsynonymous SNV	Nfkb1:NM_008689:exon7:c.T359C:p.V120A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	124	118	30	0.254237288	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9632999	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	240	396	90	0.227272727	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.9979789	AAA	nonsynonymous	A	5	AAAAA	NA
M1	chr3	141211441	12A2p6	cell line	sgMsh2	141211441	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	79	0	0	NA	exonic	Pdha2	nonsynonymous SNV	Pdha2:NM_008811:exon1:c.G305A:p.C102Y	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	GCA	nonsynonymous	NA	NA	NA	NA
M1	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	112	2	2	1	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	CTC	synonymous	NA	NA	NA	NA
M1	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	58	12	0.206896552	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999983	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	266	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9993637	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	96	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	GTT	synonymous	NA	NA	NA	NA
M1	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	61	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	152428148	12A2p6	cell line	sgMsh2	152428148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	162	89	23	0.258426966	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001355673:exon3:c.A842G:p.Q281R,Zzz3:NM_001080755:exon4:c.A842G:p.Q281R,Zzz3:NM_001287139:exon4:c.A842G:p.Q281R"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	54	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9652067	CCA	synonymous	C	5	CCCCC	NA
M1	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	381	161	34	0.211180124	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.83E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	143	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	64	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	169	30	4	0.133333333	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999665	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	122	25	5	0.2	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	97	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	172	205	59	0.287804878	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999712	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr3	158170655	12A2p6	cell line	sgMsh2	158170655	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	70	0	0	NA	exonic	Lrrc7	synonymous SNV	"Lrrc7:NM_001370781:exon18:c.G1896C:p.V632V,Lrrc7:NM_001370782:exon18:c.G1896C:p.V632V,Lrrc7:NM_001081358:exon19:c.G1797C:p.V599V,Lrrc7:NM_001291452:exon19:c.G1797C:p.V599V,Lrrc7:NM_001291453:exon19:c.G1797C:p.V599V"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GCA	synonymous	NA	NA	NA	NA
M1	chr4	3172475	12A2p6	cell line	sgMsh2	3172475	T	C	SNV	Mutect2;MuSe;Vardict	3	0.138	249	0	0	NA	exonic	Vmn1r2	synonymous SNV	Vmn1r2:NM_001167534:exon1:c.T393C:p.G131G	4qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	synonymous	NA	NA	NA	NA
M1	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	47	11	0.234042553	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	114	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	AAG	synonymous	NA	NA	NA	NA
M1	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	64	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.973308	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	48	26	8	0.307692308	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	175	28	7	0.25	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999752	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	24521278	12A2p6	cell line	sgMsh2	24521278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	168	20	6	0.3	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon10:c.T1154C:p.L385P	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999648	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	89	13	3	0.230769231	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981685	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	76	81	26	0.320987654	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	ATG	synonymous	NA	NA	NA	NA
M1	chr4	32645212	12A2p6	cell line	sgMsh2	32645212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	100	34	10	0.294117647	exonic	Casp8ap2	synonymous SNV	"Casp8ap2:NM_001122978:exon8:c.A4284G:p.S1428S,Casp8ap2:NM_011997:exon8:c.A4284G:p.S1428S"	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	CAC	synonymous	NA	NA	NA	NA
M1	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	93	16	4	0.25	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr4	33077460	12A2p6	cell line	sgMsh2	33077460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.293	31	0	0	NA	exonic	Gabrr2	nonsynonymous SNV	Gabrr2:NM_008076:exon3:c.G301A:p.A101T	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr4	33246296	12A2p6	cell line	sgMsh2	33246296	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	47	304	65	0.213815789	exonic	Pnrc1	frameshift deletion	Pnrc1:NM_001033225:exon2:c.662delA:p.K221Sfs*13	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	124	65	25	0.384615385	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	87	48	14	0.291666667	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	123	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	TAC	synonymous	NA	NA	NA	NA
M1	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	42	2	1	0.5	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	74	65	11	0.169230769	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	76	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	117	10	2	0.2	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	220	34	3	0.088235294	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	63	2	0	0	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	54	28	3	0.107142857	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	CTC	synonymous	NA	NA	NA	NA
M1	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	49	2	0	0	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	GTG	synonymous	NA	NA	NA	NA
M1	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	123	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	59113907	12A2p6	cell line	sgMsh2	59113907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	74	0	0	NA	exonic	Shoc1	synonymous SNV	Shoc1:NM_001370843:exon2:c.T57C:p.Y19Y	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	AAT	synonymous	NA	NA	NA	NA
M1	chr4	59217182	12A2p6	cell line	sgMsh2	59217182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	102	172	49	0.284883721	exonic	Ugcg	nonsynonymous SNV	Ugcg:NM_011673:exon6:c.A705C:p.E235D	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	59493202	12A2p6	cell line	sgMsh2	59493202	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	111	118	36	0.305084746	exonic	Ptbp3	synonymous SNV	"Ptbp3:NM_178164:exon7:c.T783G:p.P261P,Ptbp3:NM_144904:exon8:c.T867G:p.P289P"	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	TAG	synonymous	NA	NA	NA	NA
M1	chr4	59911934	12A2p6	cell line	sgMsh2	59911934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	85	0	0	NA	exonic	Slc46a2	nonsynonymous SNV	Slc46a2:NM_021053:exon3:c.T1277C:p.I426T	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	26	14	2	0.142857143	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	CCT	synonymous	NA	NA	NA	NA
M1	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	83	1	1	1	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr4	70281170	12A2p6	cell line	sgMsh2	70281170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	91	25	8	0.32	exonic	Cdk5rap2	nonsynonymous SNV	"Cdk5rap2:NM_001313762:exon18:c.A1897G:p.T633A,Cdk5rap2:NM_145990:exon21:c.A2716G:p.T906A"	4qC2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	58	33	11	0.333333333	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CTA	synonymous	NA	NA	NA	NA
M1	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	118	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	83417779	12A2p6	cell line	sgMsh2	83417779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	31	10	3	0.3	exonic	Snapc3	synonymous SNV	"Snapc3:NM_001358795:exon1:c.T27G:p.G9G,Snapc3:NM_029949:exon1:c.T27G:p.G9G"	4qC3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	GTG	synonymous	GGC	8	GGCGGCGG	NA
M1	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	127	4	3	0.75	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr4	88129016	12A2p6	cell line	sgMsh2	88129016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	19	7	0.368421053	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon4:c.T251C:p.V84A	4qC4	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr4	96475526	12A2p6	cell line	sgMsh2	96475526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	108	0	0	NA	exonic	Cyp2j8	nonsynonymous SNV	"Cyp2j8:NM_001370972:exon5:c.A467T:p.E156V,Cyp2j8:NM_001104927:exon6:c.A899T:p.E300V"	4qC5	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	70	59	20	0.338983051	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	34	96	32	0.333333333	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9720255	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.375	59	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr4	107106807	12A2p6	cell line	sgMsh2	107106807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	43	0	0	NA	exonic	Cdcp2	nonsynonymous SNV	Cdcp2:NM_172873:exon4:c.T853C:p.W285R	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr4	107977643	12A2p6	cell line	sgMsh2	107977643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	66	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon2:c.C175T:p.R59W	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	162	28	11	0.392857143	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	122	9	4	0.444444444	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	120	72	21	0.291666667	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	87	99	22	0.222222222	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	143	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	GCT	synonymous	NA	NA	NA	NA
M1	chr4	113597701	12A2p6	cell line	sgMsh2	113597701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	128	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon40:c.T2991C:p.T997T,Skint5:NM_001167878:exon40:c.T2991C:p.T997T"	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997395	CAG	synonymous	NA	NA	NA	NA
M1	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	20	4	0.2	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.459	24	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1	chr4	116089272	12A2p6	cell line	sgMsh2	116089272	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	59	54	2	0.037037037	exonic	Lrrc41	frameshift deletion	Lrrc41:NM_153521:exon4:c.1183delC:p.R396Afs*34	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1	chr4	116089541	12A2p6	cell line	sgMsh2	116089541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	68	71	1	0.014084507	exonic	Lrrc41	synonymous SNV	Lrrc41:NM_153521:exon4:c.A1452G:p.S484S	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	CAC	synonymous	NA	NA	NA	NA
M1	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	204	16	5	0.3125	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999942	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr4	117681851	12A2p6	cell line	sgMsh2	117681851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	78	28	6	0.214285714	exonic	Dmap1	synonymous SNV	Dmap1:NM_023178:exon2:c.T87C:p.D29D	4qD2.1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	TAT	synonymous	NA	NA	NA	NA
M1	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	31	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	52	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	216	66	22	0.333333333	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	ATT	synonymous	NA	NA	NA	NA
M1	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	67	6	0	0	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	84	7	3	0.428571429	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976489	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	55	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	99	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	75	139	45	0.323741007	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	TAG	synonymous	NA	NA	NA	NA
M1	chr4	126180790	12A2p6	cell line	sgMsh2	126180790	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	105	296	100	0.337837838	exonic	Thrap3	synonymous SNV	"Thrap3:NM_146153:exon3:c.T162C:p.Y54Y,Thrap3:NM_001356455:exon4:c.T162C:p.Y54Y,Thrap3:NM_001356456:exon4:c.T162C:p.Y54Y"	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	AAT	synonymous	NA	NA	NA	NA
M1	chr4	126355121	12A2p6	cell line	sgMsh2	126355121	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	68	6	2	0.333333333	exonic	Ago3	stopgain	Ago3:NM_153402:exon13:c.C1636T:p.Q546X	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr4	127312355	12A2p6	cell line	sgMsh2	127312355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	60	0	0	NA	exonic	Gja4	nonsynonymous SNV	Gja4:NM_008120:exon2:c.A614C:p.E205A	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	83	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	128909374	12A2p6	cell line	sgMsh2	128909374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	0	0	NA	exonic	Trim62	nonsynonymous SNV	"Trim62:NM_001370757:exon4:c.A1120G:p.R374G,Trim62:NM_001370756:exon5:c.A1234G:p.R412G,Trim62:NM_178110:exon5:c.A1216G:p.R406G"	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	61	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	CAT	synonymous	NA	NA	NA	NA
M1	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.453	71	22	3	0.136363636	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	118	26	9	0.346153846	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	TTC	synonymous	NA	NA	NA	NA
M1	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	19	19	7	0.368421053	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9424828	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	90	28	6	0.214285714	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	ATT	synonymous	NA	NA	NA	NA
M1	chr4	133681690	12A2p6	cell line	sgMsh2	133681690	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	63	94	35	0.372340426	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon20:c.C5493T:p.R1831R,Arid1a:NM_001363070:exon20:c.C4350T:p.R1450R"	4qD2.3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	CGC	synonymous	NA	NA	NA	NA
M1	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	84	26	8	0.307692308	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976489	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	51	13	3	0.230769231	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	ATG	synonymous	NA	NA	NA	NA
M1	chr4	134853048	12A2p6	cell line	sgMsh2	134853048	T	C	SNV	Mutect2;Vardict	2	0.25	13	53	17	0.320754717	exonic	Maco1	nonsynonymous SNV	Maco1:NM_025382:exon1:c.A70G:p.I24V	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9236512	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	56	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	46	303	89	0.293729373	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	78	197	3	0.015228426	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	92	101	29	0.287128713	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	CTG	synonymous	NA	NA	NA	NA
M1	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	45	33	8	0.242424242	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	15	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9305185	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	139371766	12A2p6	cell line	sgMsh2	139371766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	18	26	7	0.269230769	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon20:c.T2550C:p.A850A,Emc1:NM_146157:exon21:c.T2559C:p.A853A"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9396941	CTA	synonymous	NA	NA	NA	NA
M1	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	39	13	1	0.076923077	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	69	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2	2	0.269	9	2	0	0	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.000981839	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	21	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9476928	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	144	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999883	CCT	synonymous	NA	NA	NA	NA
M1	chr4	143810423	12A2p6	cell line	sgMsh2	143810423	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.346	148	0	0	NA	exonic	Pramel26	frameshift insertion	Pramel26:NM_001005371:exon4:c.1336dupT:p.C446Lfs*2	4qE1	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACA	frameshift	A	5	AAAAA	1
M1	chr4	149106266	12A2p6	cell line	sgMsh2	149106266	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.315	136	11	1	0.090909091	exonic	Dffa	nonsynonymous SNV	"Dffa:NM_001025296:exon2:c.A251G:p.K84R,Dffa:NM_010044:exon2:c.A251G:p.K84R"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	52	10	5	0.5	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr4	154341810	12A2p6	cell line	sgMsh2	154341810	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	24	0	0	NA	exonic	Prdm16	nonsynonymous SNV	"Prdm16:NM_001177995:exon9:c.C1520T:p.P507L,Prdm16:NM_001291026:exon9:c.C1514T:p.P505L,Prdm16:NM_001291029:exon9:c.C1520T:p.P507L,Prdm16:NM_027504:exon9:c.C1517T:p.P506L"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9546678	CGG	nonsynonymous	NA	NA	NA	NA
M1	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	37	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	154990701	12A2p6	cell line	sgMsh2	154990701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	27	0	0	NA	exonic	Plch2	nonsynonymous SNV	"Plch2:NM_001113360:exon16:c.T2455C:p.C819R,Plch2:NM_001356470:exon16:c.T2212C:p.C738R,Plch2:NM_175556:exon16:c.T2455C:p.C819R"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr4	154996271	12A2p6	cell line	sgMsh2	154996271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	68	0	0	NA	exonic	Plch2	nonsynonymous SNV	"Plch2:NM_001113360:exon11:c.G1757A:p.R586H,Plch2:NM_001356470:exon11:c.G1514A:p.R505H,Plch2:NM_175556:exon11:c.G1757A:p.R586H"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	41	2	0	0	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	74	64	21	0.328125	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	79	20	2	0.1	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	CAA	synonymous	NA	NA	NA	NA
M1	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	135	3	1	0.333333333	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	162	8	2	0.25	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.989473	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr5	3679083	12A2p6	cell line	sgMsh2	3679083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	182	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon11:c.T832C:p.Y278H,Tmbim7:NM_029154:exon11:c.T598C:p.Y200H"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999825	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	117	34	6	0.176470588	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	116	46	5	0.108695652	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	60	60	30	0.5	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	34	26	7	0.269230769	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9334532	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	143	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	CTT	synonymous	NA	NA	NA	NA
M1	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	179	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999797	TAG	synonymous	NA	NA	NA	NA
M1	chr5	6771461	12A2p6	cell line	sgMsh2	6771461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	182	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.A1601G:p.K534R	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9997434	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	6778523	12A2p6	cell line	sgMsh2	6778523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	76	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon3:c.A294G:p.V98V	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CTA	synonymous	NA	NA	NA	NA
M1	chr5	7976914	12A2p6	cell line	sgMsh2	7976914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	122	0	0	NA	exonic	Steap4	synonymous SNV	Steap4:NM_054098:exon3:c.A876G:p.Q292Q	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	AAC	synonymous	NA	NA	NA	NA
M1	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	62	161	36	0.223602484	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9223688	CTG	synonymous	NA	NA	NA	NA
M1	chr5	9512505	12A2p6	cell line	sgMsh2	9512505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.A1344C:p.K448N	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	148	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	142	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9984696	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	161	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	73	7	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.8210944	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	20215449	12A2p6	cell line	sgMsh2	20215449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	95	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon4:c.T393C:p.P131P,Magi2:NM_015823:exon4:c.T393C:p.P131P,Magi2:NM_001170746:exon5:c.T882C:p.P294P"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	CTG	synonymous	NA	NA	NA	NA
M1	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	153	116	15	0.129310345	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M1	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	193	114	35	0.307017544	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr5	24320084	12A2p6	cell line	sgMsh2	24320084	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	36	3	2	0.666666667	exonic	Kcnh2	frameshift deletion	"Kcnh2:NM_001294162:exon11:c.2379delC:p.T794Lfs*130,Kcnh2:NM_013569:exon15:c.3405delC:p.T1136Lfs*130"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	NA	NA	TGG	frameshift	NA	NA	NA	-1
M1	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	29	9	6	0.666666667	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9643529	CAT	synonymous	NA	NA	NA	NA
M1	chr5	24380308	12A2p6	cell line	sgMsh2	24380308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	25	0	0	NA	exonic	Nos3	synonymous SNV	Nos3:NM_008713:exon19:c.T2457C:p.P819P	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.68E-06	CTC	synonymous	NA	NA	NA	NA
M1	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	58	7	3	0.428571429	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CAC	synonymous	NA	NA	NA	NA
M1	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	43	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	CCT	synonymous	NA	NA	NA	NA
M1	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	45	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	1	0.6535299	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	25261997	12A2p6	cell line	sgMsh2	25261997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	96	55	15	0.272727273	exonic	Galnt11	synonymous SNV	"Galnt11:NM_001359890:exon9:c.T1296C:p.R432R,Galnt11:NM_144908:exon9:c.T1296C:p.R432R"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.009968419	GTG	synonymous	NA	NA	NA	NA
M1	chr5	25315029	12A2p6	cell line	sgMsh2	25315029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	113	4	1	0.25	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon36:c.T6082C:p.L2028L	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	AAT	synonymous	NA	NA	NA	NA
M1	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	163	14	9	0.642857143	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999548	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	235	9	3	0.333333333	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	GAA	synonymous	NA	NA	NA	NA
M1	chr5	27760034	12A2p6	cell line	sgMsh2	27760034	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	52	42	2	0.047619048	exonic	Paxip1	frameshift deletion	Paxip1:NM_018878:exon10:c.2027delC:p.P676Lfs*24	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	58	1	0	0	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	ATT	nonsynonymous	T	5	TTTTT	NA
M1	chr5	30115901	12A2p6	cell line	sgMsh2	30115901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	70	0	0	NA	exonic	Garem2	synonymous SNV	Garem2:NM_001167879:exon5:c.C1461T:p.C487C	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9573814	GCC	synonymous	NA	NA	NA	NA
M1	chr5	30197383	12A2p6	cell line	sgMsh2	30197383	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	85	0	0	NA	exonic	Adgrf3	nonsynonymous SNV	Adgrf3:NM_001014394:exon10:c.C1646A:p.T549N	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	54	8	5	0.625	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	2	0.8697635	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	103	75	13	0.173333333	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.6997105	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.63	86	143	45	0.314685315	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M1	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	171	92	19	0.206521739	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999697	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M1	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	168	91	18	0.197802198	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999648	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M1	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	65	155	35	0.225806452	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	57	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	31488148	12A2p6	cell line	sgMsh2	31488148	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	88	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A1244T:p.K415M	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	32316596	12A2p6	cell line	sgMsh2	32316596	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	96	0	0	NA	exonic	Plb1	nonsynonymous SNV	"Plb1:NM_030072:exon26:c.T1466G:p.L489R,Plb1:NM_001081407:exon27:c.T1751G:p.L584R"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	276	32	13	0.40625	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CAG	synonymous	NA	NA	NA	NA
M1	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	199	40	10	0.25	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999925	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M1	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	126	35	8	0.228571429	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	123	13	1	0.076923077	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	220	34	7	0.205882353	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999974	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	37	5	0.135135135	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	37107275	12A2p6	cell line	sgMsh2	37107275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	38	0	0	NA	exonic	Jakmip1	nonsynonymous SNV	"Jakmip1:NM_001347348:exon7:c.T1259C:p.L420P,Jakmip1:NM_178394:exon8:c.T1259C:p.L420P"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9769844	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	37286411	12A2p6	cell line	sgMsh2	37286411	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	131	0	0	NA	exonic	Crmp1	frameshift deletion	"Crmp1:NM_001136058:exon12:c.1667delC:p.L558Wfs*102,Crmp1:NM_007765:exon12:c.1325delC:p.L444Wfs*102"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1	chr5	38673915	12A2p6	cell line	sgMsh2	38673915	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	126	17	3	0.176470588	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.C746A:p.P249H,Zfp518b:NM_001081144:exon4:c.C746A:p.P249H"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr5	39614829	12A2p6	cell line	sgMsh2	39614829	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	94	86	20	0.23255814	exonic	Hs3st1	nonsynonymous SNV	Hs3st1:NM_010474:exon2:c.T470G:p.V157G	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9906722	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	41818693	12A2p6	cell line	sgMsh2	41818693	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	196	54	19	0.351851852	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon10:c.A5277G:p.E1759E,Bod1l:NM_001310601:exon10:c.A5277G:p.E1759E"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999913	CTT	synonymous	NA	NA	NA	NA
M1	chr5	44014873	12A2p6	cell line	sgMsh2	44014873	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	113	0	0	NA	exonic	Prom1	nonsynonymous SNV	"Prom1:NM_001163581:exon14:c.A1685C:p.N562T,Prom1:NM_001163582:exon14:c.A1700C:p.N567T,Prom1:NM_001163578:exon15:c.A1775C:p.N592T,Prom1:NM_001163583:exon15:c.A1775C:p.N592T,Prom1:NM_001163584:exon15:c.A1775C:p.N592T,Prom1:NM_001163585:exon16:c.A1802C:p.N601T,Prom1:NM_008935:exon16:c.A1775C:p.N592T,Prom1:NM_001163577:exon17:c.A1802C:p.N601T"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.7403659	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	120	92	15	0.163043478	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	68	432	104	0.240740741	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9202543	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	32	156	42	0.269230769	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9691708	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	143	116	27	0.232758621	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	GTT	nonsynonymous	G	5	GGGGG	NA
M1	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	215	45	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9995585	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	200	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999929	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	64316379	12A2p6	cell line	sgMsh2	64316379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	74	63	16	0.253968254	exonic	Tbc1d1	synonymous SNV	"Tbc1d1:NM_001289514:exon13:c.A1857G:p.K619K,Tbc1d1:NM_019636:exon14:c.A2244G:p.K748K,Tbc1d1:NM_001310611:exon16:c.A2523G:p.K841K"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9638115	AAC	synonymous	NA	NA	NA	NA
M1	chr5	65223032	12A2p6	cell line	sgMsh2	65223032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	196	37	9	0.243243243	exonic	Wdr19	nonsynonymous SNV	"Wdr19:NM_001359879:exon10:c.A894G:p.I298M,Wdr19:NM_001359880:exon10:c.A894G:p.I298M,Wdr19:NM_153391:exon10:c.A894G:p.I298M"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999913	TAA	nonsynonymous	A	5	AAAAA	NA
M1	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	70	1032	223	0.216085271	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	66	89	34	0.382022472	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GTA	synonymous	NA	NA	NA	NA
M1	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	90	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	155	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999325	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9500227	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr5	69563130	12A2p6	cell line	sgMsh2	69563130	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	93	16	4	0.25	exonic	Guf1	nonsynonymous SNV	Guf1:NM_172711:exon9:c.C932A:p.T311N	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr5	72353881	12A2p6	cell line	sgMsh2	72353881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	89	0	0	NA	exonic	Corin	nonsynonymous SNV	"Corin:NM_001122756:exon10:c.T1352C:p.L451P,Corin:NM_016869:exon10:c.T1550C:p.L517P"	5qC3.2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9903703	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	72539709	12A2p6	cell line	sgMsh2	72539709	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	178	45	12	0.266666667	exonic	Nfxl1	synonymous SNV	Nfxl1:NM_133921:exon9:c.G1122A:p.K374K	5qC3.2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999787	TCT	synonymous	NA	NA	NA	NA
M1	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	164	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	TAT	synonymous	NA	NA	NA	NA
M1	chr5	72710300	12A2p6	cell line	sgMsh2	72710300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	110	0	0	NA	exonic	Txk	nonsynonymous SNV	"Txk:NM_001289494:exon9:c.A835T:p.I279F,Txk:NM_013698:exon9:c.A901T:p.I301F,Txk:NM_001122754:exon10:c.A901T:p.I301F,Txk:NM_001289495:exon10:c.A739T:p.I247F"	5qC3.2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	139	24	7	0.291666667	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.8	92	25	17	0.68	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M1	chr5	76631450	12A2p6	cell line	sgMsh2	76631450	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	193	9	2	0.222222222	exonic	Cep135	nonsynonymous SNV	Cep135:NM_199032:exon18:c.T2306G:p.V769G	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9996255	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	113	4	0	0	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	ATG	synonymous	NA	NA	NA	NA
M1	chr5	76966323	12A2p6	cell line	sgMsh2	76966323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	66	625	134	0.2144	exonic	Paics	synonymous SNV	"Paics:NM_001356974:exon8:c.T1026C:p.T342T,Paics:NM_025939:exon8:c.T1029C:p.T343T,Paics:NM_001356971:exon9:c.T1029C:p.T343T,Paics:NM_001356972:exon9:c.T1029C:p.T343T,Paics:NM_001356973:exon9:c.T1029C:p.T343T"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CTG	synonymous	NA	NA	NA	NA
M1	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	102	103	24	0.233009709	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	9.51E-07	CTG	synonymous	NA	NA	NA	NA
M1	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	69	137	34	0.248175182	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	ATT	synonymous	NA	NA	NA	NA
M1	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	92	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	113	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	154	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	87520874	12A2p6	cell line	sgMsh2	87520874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	95	0	0	NA	exonic	Sult1b1	nonsynonymous SNV	"Sult1b1:NM_001382837:exon5:c.T508C:p.Y170H,Sult1b1:NM_001356943:exon6:c.T508C:p.Y170H,Sult1b1:NM_019878:exon6:c.T508C:p.Y170H"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	152	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999216	GCA	nonsynonymous	NA	NA	NA	NA
M1	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	140	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998571	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	134	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9996623	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	88554691	12A2p6	cell line	sgMsh2	88554691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	39	171	34	0.198830409	exonic	Utp3	synonymous SNV	Utp3:NM_023054:exon1:c.C78T:p.D26D	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	ACG	synonymous	NA	NA	NA	NA
M1	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	153	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9998846	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	142	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998707	AAG	synonymous	NA	NA	NA	NA
M1	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	131	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	AAC	synonymous	A	5	AAAAA	NA
M1	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	131	1	0	0	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	CTG	synonymous	NA	NA	NA	NA
M1	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	108	504	240	0.476190476	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992915	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	243	86	22	0.255813953	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9985874	CTG	synonymous	NA	NA	NA	NA
M1	chr5	96086179	12A2p6	cell line	sgMsh2	96086179	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	133	68	16	0.235294118	exonic	Cnot6l	synonymous SNV	"Cnot6l:NM_001285511:exon9:c.T972G:p.A324A,Cnot6l:NM_001285514:exon9:c.T687G:p.A229A,Cnot6l:NM_144910:exon9:c.T972G:p.A324A,Cnot6l:NM_178854:exon9:c.T987G:p.A329A"	5qE3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	CAG	synonymous	NA	NA	NA	NA
M1	chr5	98855164	12A2p6	cell line	sgMsh2	98855164	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.155	25	0	0	NA	exonic	Bmp3	nonsynonymous SNV	"Bmp3:NM_001310677:exon1:c.A52G:p.N18D,Bmp3:NM_173404:exon1:c.A52G:p.N18D"	5qE3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.704041065	1	0.7178878	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	72	231	39	0.168831169	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.899818	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	89	21	1	0.047619048	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.7716208	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	101937566	12A2p6	cell line	sgMsh2	101937566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	110	20	4	0.2	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon14:c.T2061C:p.T687T	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	CAG	synonymous	NA	NA	NA	NA
M1	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	148	40	13	0.325	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	139	30	11	0.366666667	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	236	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	170	75	15	0.2	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999682	AAG	synonymous	NA	NA	NA	NA
M1	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	74	61	16	0.262295082	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.6971633	ATA	synonymous	NA	NA	NA	NA
M1	chr5	106903057	12A2p6	cell line	sgMsh2	106903057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	71	0	0	NA	exonic	Hfm1	synonymous SNV	Hfm1:NM_177873:exon10:c.C1020A:p.A340A	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	GGG	synonymous	NA	NA	NA	NA
M1	chr5	107821791	12A2p6	cell line	sgMsh2	107821791	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	148	180	34	0.188888889	exonic	Evi5	nonsynonymous SNV	"Evi5:NM_001378824:exon3:c.C253A:p.H85N,Evi5:NM_001378825:exon3:c.C253A:p.H85N,Evi5:NM_007964:exon3:c.C385A:p.H129N"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	125	20	11	0.55	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	36	10	2	0.2	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr5	109086534	12A2p6	cell line	sgMsh2	109086534	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	431	0	0	NA	exonic	Vmn2r12	nonsynonymous SNV	"Vmn2r12:NM_001104623:exon6:c.A1811C:p.K604T,Vmn2r12:NM_001385229:exon6:c.A1808C:p.K603T"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.07E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	109219013	12A2p6	cell line	sgMsh2	109219013	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	335	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon4:c.T1340G:p.L447R,Vmn2r14:NM_001384975:exon4:c.T1340G:p.L447R"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	1.48E-08	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	88	5	1	0.2	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	113745185	12A2p6	cell line	sgMsh2	113745185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	70	83	20	0.240963855	exonic	Sart3	synonymous SNV	"Sart3:NM_001356621:exon17:c.T2439C:p.S813S,Sart3:NM_001356623:exon17:c.T1218C:p.S406S,Sart3:NM_016926:exon17:c.T2385C:p.S795S"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9701848	TAC	synonymous	NA	NA	NA	NA
M1	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	72	93	19	0.204301075	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	GTG	synonymous	NA	NA	NA	NA
M1	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	72	1	0	0	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	67	139	63	0.45323741	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	48	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	86	30	7	0.233333333	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CTT	synonymous	NA	NA	NA	NA
M1	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	22	6	0	0	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	38	38	4	0.105263158	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr5	122591144	12A2p6	cell line	sgMsh2	122591144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	117	41	6	0.146341463	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon10:c.A905G:p.E302G,Ift81:NM_001358917:exon11:c.A1124G:p.E375G,Ift81:NM_001358918:exon11:c.A956G:p.E319G,Ift81:NM_009879:exon11:c.A1124G:p.E375G"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	CTC	nonsynonymous	CT	9	CTCTCTCTC	NA
M1	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	69	5	1	0.2	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	122941048	12A2p6	cell line	sgMsh2	122941048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	57	11	3	0.272727273	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001003953:exon9:c.A859G:p.T287A,Kdm2b:NM_001378863:exon9:c.A841G:p.T281A"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	123178171	12A2p6	cell line	sgMsh2	123178171	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	148	0	0	NA	exonic	Hpd	frameshift deletion	Hpd:NM_008277:exon8:c.516delA:p.K172Nfs*13	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	150	38	12	0.315789474	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	161	47	17	0.361702128	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	68	41	9	0.219512195	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9942086	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	123	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GTG	nonsynonymous	G	5	GGGGG	NA
M1	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	1	0	0	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr5	124140539	12A2p6	cell line	sgMsh2	124140539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	23	15	0	0	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon5:c.T628C:p.F210L,Pitpnm2:NM_011256:exon6:c.T628C:p.F210L"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	146	252	47	0.186507937	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998942	AAA	synonymous	NA	NA	NA	NA
M1	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	130	191	44	0.230366492	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	TAC	synonymous	NA	NA	NA	NA
M1	chr5	124490769	12A2p6	cell line	sgMsh2	124490769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	55	32	4	0.125	exonic	Snrnp35	nonsynonymous SNV	Snrnp35:NM_029532:exon2:c.C644T:p.A215V	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr5	124556812	12A2p6	cell line	sgMsh2	124556812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	101	24	10	0.416666667	exonic	Ddx55	nonsynonymous SNV	"Ddx55:NM_001190795:exon4:c.T302C:p.V101A,Ddx55:NM_026409:exon4:c.T302C:p.V101A"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	124755780	12A2p6	cell line	sgMsh2	124755780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon17:c.T2747C:p.F916S	5qF	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	125484592	12A2p6	cell line	sgMsh2	125484592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	61	127	21	0.165354331	exonic	Aacs	nonsynonymous SNV	Aacs:NM_030210:exon3:c.G293A:p.R98H	5qG1.1	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	99	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9980858	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	72	29	4	0.137931034	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	165	1	1	1	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999591	TAC	synonymous	NA	NA	NA	NA
M1	chr5	134670473	12A2p6	cell line	sgMsh2	134670473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	38	10	0.263157895	exonic	Limk1	synonymous SNV	"Limk1:NM_001305875:exon4:c.A429G:p.L143L,Limk1:NM_010717:exon5:c.A453G:p.L151L"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	GTA	synonymous	NA	NA	NA	NA
M1	chr5	135374980	12A2p6	cell line	sgMsh2	135374980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	76	18	8	0.444444444	exonic	Nsun5	nonsynonymous SNV	"Nsun5:NM_001359617:exon7:c.T809C:p.L270S,Nsun5:NM_145414:exon7:c.T809C:p.L270S"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	147	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998993	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr5	137302934	12A2p6	cell line	sgMsh2	137302934	G	-	Deletion	Strelka2;Vardict	2	0.3235	34	78	3	0.038461538	exonic	Srrt	frameshift deletion	"Srrt:NM_001109909:exon3:c.229delC:p.Q77Rfs*71,Srrt:NM_001109910:exon3:c.229delC:p.Q77Rfs*71,Srrt:NM_001359602:exon3:c.229delC:p.Q77Rfs*71,Srrt:NM_031405:exon3:c.229delC:p.Q77Rfs*71"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	G	8	GGGGGGGG	-1
M1	chr5	137387001	12A2p6	cell line	sgMsh2	137387001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	70	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon80:c.A15169G:p.M5057V	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	112	58	25	0.431034483	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	AGG	synonymous	NA	NA	NA	NA
M1	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	81	4	2	0.5	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	137735064	12A2p6	cell line	sgMsh2	137735064	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.268	25	12	0	0	exonic	Nyap1	frameshift insertion	"Nyap1:NM_175521:exon3:c.1705dupG:p.V569Gfs*3,Nyap1:NM_001347505:exon4:c.1705dupG:p.V569Gfs*3"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAC	frameshift	C	5	CCCCC	1
M1	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	139	36	7	0.194444444	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	138165941	12A2p6	cell line	sgMsh2	138165941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	90	134	19	0.141791045	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon13:c.T1496C:p.L499P,Mcm7:NM_001356577:exon13:c.T1496C:p.L499P,Mcm7:NM_008568:exon13:c.T1817C:p.L606P"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	138167205	12A2p6	cell line	sgMsh2	138167205	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	108	189	47	0.248677249	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon11:c.A1115T:p.N372I,Mcm7:NM_001356577:exon11:c.A1115T:p.N372I,Mcm7:NM_008568:exon11:c.A1436T:p.N479I"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8744381	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr5	138194790	12A2p6	cell line	sgMsh2	138194790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	77	4	0	0	exonic	Mblac1	synonymous SNV	Mblac1:NM_177878:exon1:c.C393A:p.P131P	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	CCG	synonymous	NA	NA	NA	NA
M1	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	130	52	25	0.480769231	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	139807660	12A2p6	cell line	sgMsh2	139807660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	207	1	0	0	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon5:c.A613G:p.I205V,Tmem184a:NM_001161548:exon6:c.A685G:p.I229V"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	2	0.6078526	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	77	93	24	0.258064516	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.976977	CTT	synonymous	NA	NA	NA	NA
M1	chr5	141956162	12A2p6	cell line	sgMsh2	141956162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	56	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon11:c.A1564G:p.I522V	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	0.798439	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	60	5623	1183	0.210385915	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9782167	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M1	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	47	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1	chr5	144820348	12A2p6	cell line	sgMsh2	144820348	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	78	82	20	0.243902439	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon43:c.A6362T:p.K2121M	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	99	656	171	0.260670732	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	97	588	162	0.275510204	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	232	59	26	0.440677966	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	67	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr5	147639177	12A2p6	cell line	sgMsh2	147639177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	160	61	9	0.147540984	exonic	Flt1	nonsynonymous SNV	Flt1:NM_001363135:exon13:c.A2020G:p.K674E	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999475	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	133	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	TAC	synonymous	NA	NA	NA	NA
M1	chr5	150495765	12A2p6	cell line	sgMsh2	150495765	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	85	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon60:c.A8673C:p.T2891T	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	CAG	synonymous	NA	NA	NA	NA
M1	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.563	78	57	4	0.070175439	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M1	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	239	27	8	0.296296296	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	2	0.9999959	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9898695	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M1	chr6	3536860	12A2p6	cell line	sgMsh2	3536860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	182	77	12	0.155844156	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon12:c.T830G:p.F277C,Vps50:NM_001167751:exon12:c.T830G:p.F277C,Vps50:NM_024260:exon12:c.T830G:p.F277C"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999825	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	153	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	2	0.9997317	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	187	76	27	0.355263158	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999864	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M1	chr6	4634068	12A2p6	cell line	sgMsh2	4634068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	385	84	14	0.166666667	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon6:c.T931C:p.Y311H,Casd1:NM_001379144:exon11:c.T1396C:p.Y466H,Casd1:NM_145398:exon14:c.T1780C:p.Y594H"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	270	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	2	0.8639279	TGC	synonymous	NA	NA	NA	NA
M1	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	50	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.608654856	2	0.7903452	AAG	synonymous	NA	NA	NA	NA
M1	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	53	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	149	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	205	859	141	0.164144354	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9671369	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.185	143	1325	215	0.162264151	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.9129218	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M1	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	103	728	116	0.159340659	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9228464	CAC	synonymous	NA	NA	NA	NA
M1	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	113	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M1	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	239	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	13836280	12A2p6	cell line	sgMsh2	13836280	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	107	28	4	0.142857143	exonic	Gpr85	frameshift deletion	"Gpr85:NM_001330667:exon3:c.624delT:p.F208Lfs*7,Gpr85:NM_001330666:exon4:c.624delT:p.F208Lfs*7,Gpr85:NM_145066:exon4:c.624delT:p.F208Lfs*7"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	160	112	20	0.178571429	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999475	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	18319747	12A2p6	cell line	sgMsh2	18319747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	148	1	0	0	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon26:c.G4196T:p.R1399M	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54506405	2	0.9966483	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.648	181	194	132	0.680412371	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9999816	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M1	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	212	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999961	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr6	24876200	12A2p6	cell line	sgMsh2	24876200	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	244	0	0	NA	exonic	Hyal5	nonsynonymous SNV	Hyal5:NM_028957:exon2:c.T71G:p.L24R	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	28244195	12A2p6	cell line	sgMsh2	28244195	T	-	Deletion	Strelka2;Vardict	2	0.1676	179	99	15	0.151515152	exonic	Zfp800	frameshift deletion	"Zfp800:NM_001081678:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364595:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364596:exon6:c.770delA:p.K257Rfs*4"	6qA3.2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76127279	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1	chr6	29286044	12A2p6	cell line	sgMsh2	29286044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	87	9	6	0.666666667	exonic	Fam71f2	synonymous SNV	Fam71f2:NM_001101486:exon3:c.T501C:p.G167G	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.997976	GTC	synonymous	NA	NA	NA	NA
M1	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	171	137	48	0.350364964	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999697	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	45	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	145	146	56	0.383561644	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	265	258	30	0.11627907	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.9999471	AAC	nonsynonymous	A	5	AAAAA	NA
M1	chr6	35196540	12A2p6	cell line	sgMsh2	35196540	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	172	93	0	0	exonic	Nup205	stopgain	Nup205:NM_027513:exon9:c.T1325A:p.L442X	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.563232852	2	0.9995603	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	161	1	1	1	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	37986596	12A2p6	cell line	sgMsh2	37986596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	117	0	0	NA	exonic	Svopl	nonsynonymous SNV	Svopl:NM_177200:exon15:c.T1375C:p.S459P	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	174	16	4	0.25	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	0.9926802	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	48	242	66	0.272727273	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M1	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	32	3	1	0.333333333	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9691708	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Vardict	2	0.16	31	2	0	0	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	1	0.000880527	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	39623603	12A2p6	cell line	sgMsh2	39623603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	107	78	10	0.128205128	exonic	Braf	synonymous SNV	Braf:NM_139294:exon19:c.T2079C:p.Y693Y	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.6477112	AAT	synonymous	NA	NA	NA	NA
M1	chr6	40386899	12A2p6	cell line	sgMsh2	40386899	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	185	6	1	0.166666667	exonic	Agk	nonsynonymous SNV	Agk:NM_023538:exon12:c.G812T:p.R271M	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999985	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr6	40462188	12A2p6	cell line	sgMsh2	40462188	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	207	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon9:c.C1126A:p.L376M	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	0.9134042	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	296	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	194	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999904	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	171	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.9402849	CTT	synonymous	NA	NA	NA	NA
M1	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	395	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.644992459	2	5.40E-09	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	71	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1	chr6	42350378	12A2p6	cell line	sgMsh2	42350378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	27	119	21	0.176470588	exonic	Zyx	nonsynonymous SNV	"Zyx:NM_001289617:exon2:c.A110T:p.N37I,Zyx:NM_001289618:exon2:c.A110T:p.N37I,Zyx:NM_001289619:exon2:c.A110T:p.N37I,Zyx:NM_011777:exon2:c.A110T:p.N37I"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	42400772	12A2p6	cell line	sgMsh2	42400772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	219	0	0	NA	exonic	Tas2r143	nonsynonymous SNV	Tas2r143:NM_001001452:exon1:c.T535C:p.Y179H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.572317253	2	0.9999619	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	100	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	2	0.9508373	ATG	nonsynonymous	G	5	GGGGG	NA
M1	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	399	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.34E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	46347092	12A2p6	cell line	sgMsh2	46347092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	173	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon11:c.T1674G:p.C558W	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	2	0.9987737	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	146	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998942	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	47803442	12A2p6	cell line	sgMsh2	47803442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	148	662	89	0.134441088	exonic	Pdia4	nonsynonymous SNV	"Pdia4:NM_009787:exon6:c.A956G:p.Y319C,Pdia4:NM_001368756:exon7:c.A1130G:p.Y377C"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808511674	1	0.7303468	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	141	13	0	0	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76308967	2	0.6962344	TAG	synonymous	NA	NA	NA	NA
M1	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	64	28	5	0.178571429	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	94	6	0	0	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.549606251	2	0.9878695	CCC	synonymous	NA	NA	NA	NA
M1	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	74	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	86	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722209866	2	0.6920976	GTC	synonymous	NA	NA	NA	NA
M1	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	64	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	1	0.5727394	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	113	8	1	0.125	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.495099846	2	9.83E-05	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	48723510	12A2p6	cell line	sgMsh2	48723510	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	80	0	0	NA	exonic	Gimap7	nonsynonymous SNV	Gimap7:NM_146167:exon2:c.G29T:p.R10M	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.735836468	2	0.5761521	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr6	48978445	12A2p6	cell line	sgMsh2	48978445	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	151	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon4:c.C1988T:p.A663V	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr6	49108985	12A2p6	cell line	sgMsh2	49108985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	127	135	47	0.348148148	exonic	Igf2bp3	synonymous SNV	Igf2bp3:NM_023670:exon7:c.C759T:p.T253T	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	AGG	synonymous	NA	NA	NA	NA
M1	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	21	8	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1	chr6	51478513	12A2p6	cell line	sgMsh2	51478513	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	162	12	3	0.25	exonic	Cbx3	nonsynonymous SNV	"Cbx3:NM_001355002:exon4:c.A243C:p.K81N,Cbx3:NM_007624:exon4:c.A243C:p.K81N"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	AAG	nonsynonymous	A	5	AAAAA	NA
M1	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	51	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	137	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9994931	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	55897820	12A2p6	cell line	sgMsh2	55897820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	248	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.A754G:p.K252E	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.9984537	AAA	nonsynonymous	A	5	AAAAA	NA
M1	chr6	56886715	12A2p6	cell line	sgMsh2	56886715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	346	275	40	0.145454545	exonic	Nt5c3	nonsynonymous SNV	"Nt5c3:NM_026004:exon6:c.T479C:p.I160T,Nt5c3:NM_001252374:exon7:c.T377C:p.I126T,Nt5c3:NM_001360963:exon7:c.T377C:p.I126T"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.9191172	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	56986251	12A2p6	cell line	sgMsh2	56986251	A	-	Deletion	Mutect2;Strelka2	2	0.195	85	0	0	NA	exonic	Vmn1r5	frameshift deletion	Vmn1r5:NM_134174:exon2:c.910delA:p.K305Nfs*12	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	385	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.667703461	2	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	268	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	2	0.8124882	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	146	15	7	0.466666667	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998942	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	194	10	0	0	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9999774	GAC	synonymous	NA	NA	NA	NA
M1	chr6	57659700	12A2p6	cell line	sgMsh2	57659700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	137	10	1	0.1	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon19:c.T2400C:p.C800C	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.517810848	2	0.9747807	GTG	synonymous	NA	NA	NA	NA
M1	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.138	238	31	0	0	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626823658	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.14	246	30	0	0	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.635908059	2	0.9999935	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr6	58887504	12A2p6	cell line	sgMsh2	58887504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	105	22	2	0.090909091	exonic	Herc3	synonymous SNV	"Herc3:NM_001361967:exon18:c.A2122C:p.R708R,Herc3:NM_028705:exon18:c.A2122C:p.R708R,Herc3:NM_001361966:exon19:c.A2122C:p.R708R"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.9950368	TAG	synonymous	NA	NA	NA	NA
M1	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	184	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999842	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	149	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.997323	CCT	synonymous	NA	NA	NA	NA
M1	chr6	64533659	12A2p6	cell line	sgMsh2	64533659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	187	0	0	NA	exonic	Grid2	nonsynonymous SNV	"Grid2:NM_001370966:exon14:c.T2272C:p.F758L,Grid2:NM_008167:exon14:c.T2272C:p.F758L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.694956664	2	0.9955686	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr6	65952849	12A2p6	cell line	sgMsh2	65952849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	218	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A67G:p.I23V	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	2	0.9766439	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.091	381	283	1	0.003533569	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.413340238	3	0.9999982	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	421	292	41	0.140410959	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.563232852	2	0.9999998	CTG	synonymous	NA	NA	NA	NA
M1	chr6	66612495	12A2p6	cell line	sgMsh2	66612495	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	248	0	0	NA	exonic	Vmn1r33	frameshift deletion	Vmn1r33:NM_134169:exon1:c.74delT:p.F25Sfs*4	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	225	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	229	153	30	0.196078431	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9974933	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	71795322	12A2p6	cell line	sgMsh2	71795322	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	65	0	0	NA	exonic	Reep1	nonsynonymous SNV	Reep1:NM_178608:exon6:c.C593T:p.S198L	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.676787862	2	0.7350788	TCG	nonsynonymous	NA	NA	NA	NA
M1	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	134	75	28	0.373333333	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	10	2	0.2	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.964569	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	92	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.567775052	2	0.9898946	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	72615545	12A2p6	cell line	sgMsh2	72615545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	128	447	131	0.293064877	exonic	Tgoln1;Tgoln2	synonymous SNV	"Tgoln1:NM_009443:exon2:c.T951C:p.I317I,Tgoln2:NM_009444:exon2:c.T951C:p.I317I"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997395	CAA	synonymous	NA	NA	NA	NA
M1	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	159	333	54	0.162162162	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.8308807	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr6	80021747	12A2p6	cell line	sgMsh2	80021747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	194	0	0	NA	exonic	Lrrtm4	stopgain	"Lrrtm4:NM_001134743:exon2:c.C141A:p.Y47X,Lrrtm4:NM_001282102:exon2:c.C141A:p.Y47X,Lrrtm4:NM_001347261:exon2:c.C138A:p.Y46X,Lrrtm4:NM_178731:exon2:c.C138A:p.Y46X"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.912835	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr6	80022343	12A2p6	cell line	sgMsh2	80022343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	180	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.G737T:p.S246I,Lrrtm4:NM_001282102:exon2:c.G737T:p.S246I,Lrrtm4:NM_001347261:exon2:c.G734T:p.S245I,Lrrtm4:NM_178731:exon2:c.G734T:p.S245I"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9990946	AGT	nonsynonymous	GTCA	8	GTCAGTCA	NA
M1	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.114	72	30	8	0.266666667	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.517810848	2	0.9457873	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr6	82492630	12A2p6	cell line	sgMsh2	82492630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	192	0	0	NA	exonic	Tacr1	nonsynonymous SNV	Tacr1:NM_009313:exon3:c.A494G:p.Q165R	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9919115	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	83035566	12A2p6	cell line	sgMsh2	83035566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	72	9	0	0	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon2:c.T85C:p.S29P	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.8217428	GTC	nonsynonymous	GTCTCC	12	GTCTCCGTCTCC	NA
M1	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	109	6	3	0.5	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	2	0.9955856	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	64	58	5	0.086206897	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	2	0.9298226	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	249	351	47	0.133903134	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.685872263	2	0.9997927	CAA	synonymous	NA	NA	NA	NA
M1	chr6	86394436	12A2p6	cell line	sgMsh2	86394436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	337	180	69	0.383333333	exonic	Pcyox1	nonsynonymous SNV	"Pcyox1:NM_001355687:exon2:c.T260C:p.V87A,Pcyox1:NM_025823:exon3:c.T467C:p.V156A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	8.47E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	186	49	4	0.081632653	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	2	0.9993546	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M1	chr6	87827587	12A2p6	cell line	sgMsh2	87827587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	153	169	62	0.366863905	exonic	Isy1	synonymous SNV	Isy1:NM_133934:exon6:c.T297C:p.Y99Y	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999254	CAT	synonymous	NA	NA	NA	NA
M1	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	58	51	5	0.098039216	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.363376033	3	0.8037123	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	33	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9706318	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	280	29	13	0.448275862	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	138	76	11	0.144736842	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.5801269	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	89	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.526895249	2	0.970715	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	95122375	12A2p6	cell line	sgMsh2	95122375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	222	2	0	0	exonic	Kbtbd8	synonymous SNV	"Kbtbd8:NM_001102670:exon2:c.T633C:p.C211C,Kbtbd8:NM_001008785:exon3:c.T864C:p.C288C"	6qD2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999976	GTT	synonymous	NA	NA	NA	NA
M1	chr6	95655509	12A2p6	cell line	sgMsh2	95655509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	90	28	3	0.107142857	exonic	Suclg2	nonsynonymous SNV	"Suclg2:NM_001326558:exon2:c.T31C:p.F11L,Suclg2:NM_011507:exon2:c.T178C:p.F60L"	6qD2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626823658	2	0.9684394	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	192	563	101	0.179396092	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9993579	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	157	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622281457	2	0.9994788	CTT	synonymous	NA	NA	NA	NA
M1	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	187	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	2	0.8754356	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	186	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	2	0.7201033	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr6	107569194	12A2p6	cell line	sgMsh2	107569194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	291	2	0	0	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A1952G:p.Y651C	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9744452	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	134	12	3	0.25	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9941131	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	108381326	12A2p6	cell line	sgMsh2	108381326	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	91	20	4	0.2	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon18:c.T1852C:p.F618L	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	1	0.7236199	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr6	108815045	12A2p6	cell line	sgMsh2	108815045	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	228	289	44	0.152249135	exonic	Arl8b	nonsynonymous SNV	Arl8b:NM_026011:exon3:c.T266G:p.V89G	6qE2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.681330063	2	0.9996338	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr6	113065655	12A2p6	cell line	sgMsh2	113065655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	292	135	18	0.133333333	exonic	Thumpd3	nonsynonymous SNV	"Thumpd3:NM_001355266:exon7:c.G1126A:p.D376N,Thumpd3:NM_008188:exon7:c.G1126A:p.D376N"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.9999993	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr6	113367045	12A2p6	cell line	sgMsh2	113367045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	70	77	18	0.233766234	exonic	Tada3	synonymous SNV	"Tada3:NM_133932:exon9:c.C1242T:p.D414D,Tada3:NM_001372392:exon10:c.C1266T:p.D422D,Tada3:NM_001372393:exon10:c.C1266T:p.D422D"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.635908059	2	0.8878214	GGT	synonymous	NA	NA	NA	NA
M1	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	225	550	82	0.149090909	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	2	0.9998734	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	326	34	2	0.058823529	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	2	0.9999999	TTA	synonymous	NA	NA	NA	NA
M1	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	142	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.744920869	2	0.8320337	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9952845	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr6	115932093	12A2p6	cell line	sgMsh2	115932093	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	48	0	0	NA	exonic	Rho	nonsynonymous SNV	Rho:NM_145383:exon1:c.A89G:p.Y30C	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	116043711	12A2p6	cell line	sgMsh2	116043711	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	206	27	0	0	exonic	Tmcc1	nonsynonymous SNV	Tmcc1:NM_177412:exon4:c.T659C:p.I220T	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.390629236	3	0.9997561	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	116582023	12A2p6	cell line	sgMsh2	116582023	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.133	113	0	0	NA	exonic	Olfr215	frameshift deletion	Olfr215:NM_146446:exon1:c.922delA:p.I308Yfs*3	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604112656	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr6	118413915	12A2p6	cell line	sgMsh2	118413915	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	136	161	21	0.130434783	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon5:c.T452C:p.L151P	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	2	0.9992205	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	236	75	30	0.4	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	88	38	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	NA	NA	CGT	frameshift	NA	NA	NA	-1
M1	chr6	119217862	12A2p6	cell line	sgMsh2	119217862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	44	14	2	0.142857143	exonic	Dcp1b	nonsynonymous SNV	Dcp1b:NM_001033379:exon8:c.A1542C:p.E514D	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9756372	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	100	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	121187460	12A2p6	cell line	sgMsh2	121187460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	23	22	11	0.5	exonic	Pex26	synonymous SNV	"Pex26:NM_001304773:exon3:c.G561A:p.Q187Q,Pex26:NM_028730:exon3:c.G561A:p.Q187Q"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9524484	AGC	synonymous	NA	NA	NA	NA
M1	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	32	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9569947	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M1	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.0952	126	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.43241748	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M1	chr6	121880840	12A2p6	cell line	sgMsh2	121880840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	168	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon27:c.A3291G:p.V1097V	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.558690651	2	0.9992859	TAG	synonymous	GAT	8	GATGATGA	NA
M1	chr6	122320320	12A2p6	cell line	sgMsh2	122320320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	101	68	8	0.117647059	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon11:c.T2234C:p.L745S,Phc1:NM_001271579:exon12:c.T2390C:p.L797S,Phc1:NM_007905:exon12:c.T2390C:p.L797S,Phc1:NM_001355215:exon13:c.T2438C:p.L813S"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9988265	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	207	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999995	AAT	synonymous	NA	NA	NA	NA
M1	chr6	122464160	12A2p6	cell line	sgMsh2	122464160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	118	0	0	NA	exonic	Rimklb	nonsynonymous SNV	Rimklb:NM_027664:exon3:c.T224C:p.V75A	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.595028255	2	0.9975339	TAC	nonsynonymous	ACC	9	ACCACCACC	NA
M1	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	114	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.785800672	1	0.6076215	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr6	122833293	12A2p6	cell line	sgMsh2	122833293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	31	3	0.096774194	exonic	Foxj2	nonsynonymous SNV	Foxj2:NM_021899:exon5:c.T610C:p.Y204H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9826669	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	468	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.01E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	532	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794885073	2	0.9651568	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	89	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.822138276	1	0.8440429	GAT	synonymous	NA	NA	NA	NA
M1	chr6	124540328	12A2p6	cell line	sgMsh2	124540328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	287	7	1	0.142857143	exonic	C1s1	synonymous SNV	"C1s1:NM_001097617:exon4:c.T402G:p.T134T,C1s1:NM_144938:exon4:c.T402G:p.T134T"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	0.9615949	CAG	synonymous	NA	NA	NA	NA
M1	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	57	33	3	0.090909091	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.585943854	2	0.8913844	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	85	111	15	0.135135135	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.640450259	2	0.9426392	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr6	124860154	12A2p6	cell line	sgMsh2	124860154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	2	1	0.5	exonic	Gpr162	nonsynonymous SNV	"Gpr162:NM_013533:exon3:c.T926C:p.V309A,Gpr162:NM_001355257:exon4:c.T926C:p.V309A"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9258266	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	124914408	12A2p6	cell line	sgMsh2	124914408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	39	1744	11	0.006307339	exonic	Ptms	synonymous SNV	Ptms:NM_026988:exon4:c.G255A:p.E85E	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	CCT	synonymous	NA	NA	NA	NA
M1	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	215	186	34	0.182795699	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	2	0.9996384	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	80	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.8831088	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M1	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	150	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999134	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	148	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9808172	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	127088093	12A2p6	cell line	sgMsh2	127088093	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	100	42	7	0.166666667	exonic	Tigar	nonsynonymous SNV	Tigar:NM_177003:exon6:c.C591A:p.S197R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.699498864	2	0.8703523	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr6	127732773	12A2p6	cell line	sgMsh2	127732773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	82	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon2:c.G123T:p.K41N	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708583265	2	0.733393	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr6	128359260	12A2p6	cell line	sgMsh2	128359260	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	116	125	20	0.16	exonic	Rhno1	nonsynonymous SNV	"Rhno1:NM_001326583:exon2:c.A11T:p.K4I,Rhno1:NM_001326585:exon2:c.A11T:p.K4I,Rhno1:NM_001326586:exon3:c.A11T:p.K4I,Rhno1:NM_001326587:exon3:c.A11T:p.K4I"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.613197056	2	0.995446	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr6	128432629	12A2p6	cell line	sgMsh2	128432629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	47	966	147	0.152173913	exonic	Fkbp4	synonymous SNV	Fkbp4:NM_010219:exon9:c.C1065T:p.G355G	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.690414464	2	0.000620291	GGC	synonymous	NA	NA	NA	NA
M1	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	51	1073	203	0.189189189	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8688674	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	108	1422	229	0.161040788	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.363376033	3	0.9906189	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr6	129271351	12A2p6	cell line	sgMsh2	129271351	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	166	0	0	NA	exonic	Cd69	synonymous SNV	Cd69:NM_001033122:exon2:c.T171G:p.A57A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.726752067	2	0.9552713	GAG	synonymous	NA	NA	NA	NA
M1	chr6	129380018	12A2p6	cell line	sgMsh2	129380018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	301	0	0	NA	exonic	Clec12b	synonymous SNV	"Clec12b:NM_027709:exon4:c.T456C:p.S152S,Clec12b:NM_001204223:exon5:c.T456C:p.S152S"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.658619061	2	0.9999978	AAC	synonymous	NA	NA	NA	NA
M1	chr6	129583140	12A2p6	cell line	sgMsh2	129583140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	141	0	0	NA	exonic	Klre1	nonsynonymous SNV	"Klre1:NM_001381986:exon5:c.A374G:p.Y125C,Klre1:NM_001381987:exon5:c.A374G:p.Y125C,Klre1:NM_001381988:exon5:c.A374G:p.Y125C,Klre1:NM_153590:exon5:c.A374G:p.Y125C"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	129865712	12A2p6	cell line	sgMsh2	129865712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	159	0	0	NA	exonic	Klra17	nonsynonymous SNV	"Klra17:NM_001381962:exon6:c.A625G:p.K209E,Klra17:NM_133203:exon6:c.A622G:p.K208E"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.581401654	2	0.9997712	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	123	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CCC	synonymous	NA	NA	NA	NA
M1	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.578	185	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.999985	GTG	synonymous	NA	NA	NA	NA
M1	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	82	32	3	0.09375	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.495099846	2	0.09639089	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	84	18	0.214285714	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.994741892	1	0.9980007	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	92	82	18	0.219512195	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	134479576	12A2p6	cell line	sgMsh2	134479576	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	73	68	8	0.117647059	exonic	Lrp6	synonymous SNV	Lrp6:NM_008514:exon12:c.C2724T:p.P908P	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9513358	CGG	synonymous	NA	NA	NA	NA
M1	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	187	141	41	0.290780142	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999864	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	189	112	16	0.142857143	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9988466	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	134	22	5	0.227272727	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	151	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9294217	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	141	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998641	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	136804229	12A2p6	cell line	sgMsh2	136804229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	124	1	0	0	exonic	H4f16	nonsynonymous SNV	H4f16:NM_175652:exon1:c.A151G:p.I51V	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.363376033	3	0.9966613	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr6	137539334	12A2p6	cell line	sgMsh2	137539334	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	196	106	27	0.254716981	exonic	Eps8	nonsynonymous SNV	"Eps8:NM_001271587:exon2:c.C125A:p.P42H,Eps8:NM_001271588:exon2:c.C47A:p.P16H,Eps8:NM_001271595:exon2:c.C47A:p.P16H,Eps8:NM_007945:exon3:c.C47A:p.P16H"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999913	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	188	6	0	0	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.09805697	ATT	synonymous	NA	NA	NA	NA
M1	chr6	141249910	12A2p6	cell line	sgMsh2	141249910	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	9	0	0	NA	exonic	Pde3a	synonymous SNV	Pde3a:NM_018779:exon1:c.C321T:p.G107G	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.000981839	GCG	synonymous	G	5	GGGGG	NA
M1	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	144	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9964946	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	387	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.61E-09	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr6	142363551	12A2p6	cell line	sgMsh2	142363551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	270	22	5	0.227272727	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon14:c.T1793C:p.V598A,Recql:NM_001204907:exon14:c.T1793C:p.V598A,Recql:NM_001355511:exon14:c.T1793C:p.V598A,Recql:NM_023042:exon14:c.T1793C:p.V598A"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.486015445	2	0.6856917	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	245	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.511	251	18	1	0.055555556	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M1	chr6	143083255	12A2p6	cell line	sgMsh2	143083255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	259	20	5	0.25	exonic	C2cd5	nonsynonymous SNV	"C2cd5:NM_001109688:exon4:c.T257C:p.I86T,C2cd5:NM_001362113:exon4:c.T257C:p.I86T,C2cd5:NM_001362114:exon4:c.T257C:p.I86T,C2cd5:NM_001362115:exon4:c.T257C:p.I86T,C2cd5:NM_001362116:exon4:c.T257C:p.I86T,C2cd5:NM_001362117:exon4:c.T257C:p.I86T,C2cd5:NM_029081:exon4:c.T257C:p.I86T,C2cd5:NM_029897:exon4:c.T257C:p.I86T"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890271282	1	0.9985411	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr6	144155037	12A2p6	cell line	sgMsh2	144155037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	68	0	0	NA	exonic	Sox5	synonymous SNV	"Sox5:NM_001113559:exon2:c.A225G:p.Q75Q,Sox5:NM_011444:exon2:c.A225G:p.Q75Q"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.731294267	2	0.5184745	CTT	synonymous	NA	NA	NA	NA
M1	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	53	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9890025	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1202	258	8	0	0	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M1	chr6	148933108	12A2p6	cell line	sgMsh2	148933108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	143	27	4	0.148148148	exonic	Sinhcaf	nonsynonymous SNV	"Sinhcaf:NM_001355645:exon2:c.A22G:p.K8E,Sinhcaf:NM_019643:exon2:c.A22G:p.K8E"	6qG3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	204	73	20	0.273972603	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	103	157	23	0.146496815	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CGA	nonsynonymous	NA	NA	NA	NA
M1	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	72	35	7	0.2	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CAG	synonymous	NA	NA	NA	NA
M1	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	66	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	339	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	7.76E-09	CCT	synonymous	NA	NA	NA	NA
M1	chr7	4468876	12A2p6	cell line	sgMsh2	4468876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	123	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon3:c.A40G:p.S14G,Eps8l1:NM_001374622:exon3:c.A223G:p.S75G,Eps8l1:NM_026146:exon3:c.A40G:p.S14G"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	2	7.33E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	162	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	26	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9495786	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M1	chr7	4664738	12A2p6	cell line	sgMsh2	4664738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	54	63	14	0.222222222	exonic	Hspbp1	nonsynonymous SNV	"Hspbp1:NM_001360629:exon5:c.T755C:p.L252P,Hspbp1:NM_024172:exon5:c.T755C:p.L252P"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.957243	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	103	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	60	61	17	0.278688525	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9921305	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	5110630	12A2p6	cell line	sgMsh2	5110630	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	113	0	0	NA	exonic	Rfpl4	frameshift deletion	"Rfpl4:NM_001145013:exon3:c.551delA:p.N184Mfs*7,Rfpl4:NM_138954:exon3:c.551delA:p.N184Mfs*7"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	227	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9999842	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	135	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.962946489	1	0.9992123	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	395	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.41E-09	AGC	synonymous	NA	NA	NA	NA
M1	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	14	15	5	0.333333333	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9271657	AGG	synonymous	NA	NA	NA	NA
M1	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	283	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	127	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997261	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	191	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.999932	CCC	synonymous	NA	NA	NA	NA
M1	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	136	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	7287791	12A2p6	cell line	sgMsh2	7287791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	43	66	16	0.242424242	exonic	Clcn4	synonymous SNV	"Clcn4:NM_001357104:exon9:c.C1765T:p.L589L,Clcn4:NM_001302386:exon10:c.C1828T:p.L610L,Clcn4:NM_001357102:exon11:c.C2008T:p.L670L,Clcn4:NM_001357103:exon12:c.C2008T:p.L670L,Clcn4:NM_011334:exon12:c.C2008T:p.L670L,Clcn4:NM_001302387:exon13:c.C1915T:p.L639L"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	AGC	synonymous	GGCA	9	GGCAGGCAG	NA
M1	chr7	7334278	12A2p6	cell line	sgMsh2	7334278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	340	0	0	NA	exonic	Vmn2r30	nonsynonymous SNV	"Vmn2r30:NM_001384913:exon2:c.A358G:p.K120E,Vmn2r30:NM_009490:exon2:c.A358G:p.K120E"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9921794	TTA	nonsynonymous	T	9	TTTTTTTTT	NA
M1	chr7	7334434	12A2p6	cell line	sgMsh2	7334434	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	91	0	0	NA	exonic	Vmn2r30	frameshift deletion	"Vmn2r30:NM_001384913:exon2:c.202delA:p.T68Qfs*29,Vmn2r30:NM_009490:exon2:c.202delA:p.T68Qfs*29"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr7	10171206	12A2p6	cell line	sgMsh2	10171206	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	154	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon3:c.G705T:p.K235N	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.930369	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	123	8	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9924896	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr7	10714379	12A2p6	cell line	sgMsh2	10714379	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	149	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C508A:p.L170M,Nlrp4b:NM_172481:exon4:c.C508A:p.L170M"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	186	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M1	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	96	533	133	0.249530957	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	66	2	0	0	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	30	366	86	0.234972678	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	16456237	12A2p6	cell line	sgMsh2	16456237	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	30	0	0	NA	exonic	Npas1	nonsynonymous SNV	Npas1:NM_008718:exon12:c.G1383T:p.Q461H	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	151	87	25	0.287356322	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr7	16906835	12A2p6	cell line	sgMsh2	16906835	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	31	0	0	NA	exonic	Ptgir	synonymous SNV	Ptgir:NM_008967:exon1:c.C51T:p.S17S	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	GCC	synonymous	NA	NA	NA	NA
M1	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	43	1	1	1	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.09259313	TGA	synonymous	NA	NA	NA	NA
M1	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	223	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999978	ACA	synonymous	NA	NA	NA	NA
M1	chr7	18719486	12A2p6	cell line	sgMsh2	18719486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	234	0	0	NA	exonic	Psg22	synonymous SNV	Psg22:NM_001004152:exon2:c.A105G:p.G35G	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999987	GAG	synonymous	NA	NA	NA	NA
M1	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	50	13	0.26	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	19260993	12A2p6	cell line	sgMsh2	19260993	G	-	Deletion	Strelka2;Vardict	2	0.4444	9	79	1	0.012658228	exonic	Vasp	frameshift deletion	"Vasp:NM_001282021:exon6:c.539delC:p.P180Hfs*54,Vasp:NM_001282022:exon6:c.509delC:p.P170Hfs*54,Vasp:NM_009499:exon6:c.539delC:p.P180Hfs*54"	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	TGGGGG	12	TGGGGGTGGGGG	-1
M1	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	184	37	0.201086957	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	19701767	12A2p6	cell line	sgMsh2	19701767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	35	159	26	0.163522013	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.A1037G:p.N346S,Tomm40:NM_016871:exon10:c.A1037G:p.N346S"	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9733549	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	19701789	12A2p6	cell line	sgMsh2	19701789	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	26	193	57	0.295336788	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.C1015A:p.L339M,Tomm40:NM_016871:exon10:c.C1015A:p.L339M"	7qA3	chr7-3489139-20073487	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9588122	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.334	118	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	CAG	synonymous	NA	NA	NA	NA
M1	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	66	2	0	0	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CGC	synonymous	C	5	CCCCC	NA
M1	chr7	25203553	12A2p6	cell line	sgMsh2	25203553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	19	9	0	0	exonic	Dedd2	nonsynonymous SNV	Dedd2:NM_207677:exon5:c.C980T:p.T327I	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9424828	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	42	27	6	0.222222222	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	30	48	24	0.5	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9660345	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M1	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	131	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr7	26771408	12A2p6	cell line	sgMsh2	26771408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	104	0	0	NA	exonic	Cyp2b19	synonymous SNV	Cyp2b19:NM_007814:exon9:c.C1473T:p.S491S	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CCC	synonymous	NA	NA	NA	NA
M1	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	54	3	1	0.333333333	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M1	chr7	27581432	12A2p6	cell line	sgMsh2	27581432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	30	11	1	0.090909091	exonic	2310022A10Rik	nonsynonymous SNV	"2310022A10Rik:NM_001122767:exon9:c.C1100T:p.T367I,2310022A10Rik:NM_001374792:exon11:c.C1178T:p.T393I"	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.8755994	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	18	14	6	0.428571429	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9396941	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	91	120	37	0.308333333	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	28362148	12A2p6	cell line	sgMsh2	28362148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	55	22	3	0.136363636	exonic	Plekhg2	synonymous SNV	"Plekhg2:NM_001083912:exon18:c.A2226G:p.Q742Q,Plekhg2:NM_001290542:exon18:c.A2226G:p.Q742Q,Plekhg2:NM_138752:exon18:c.A2229G:p.Q743Q"	7qA3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	CTT	synonymous	NA	NA	NA	NA
M1	chr7	28546889	12A2p6	cell line	sgMsh2	28546889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	39	0	0	NA	exonic	Nccrp1	nonsynonymous SNV	Nccrp1:NM_001081115:exon1:c.G172A:p.V58I	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9555367	ACC	nonsynonymous	NA	NA	NA	NA
M1	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	45	1	1	1	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	28	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.962591	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	28840421	12A2p6	cell line	sgMsh2	28840421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	100	345	137	0.397101449	exonic	Lgals4	nonsynonymous SNV	Lgals4:NM_010706:exon6:c.G521A:p.G174E	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	74	359	128	0.356545961	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	114	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	18	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9396941	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M1	chr7	30122045	12A2p6	cell line	sgMsh2	30122045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	27	11	4	0.363636364	exonic	Zfp382	synonymous SNV	"Zfp382:NM_001081007:exon1:c.G12A:p.P4P,Zfp382:NM_001362158:exon1:c.G12A:p.P4P"	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	CGG	synonymous	NA	NA	NA	NA
M1	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	50	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	CTG	synonymous	NA	NA	NA	NA
M1	chr7	30728021	12A2p6	cell line	sgMsh2	30728021	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	139	169	51	0.301775148	exonic	Tmem147	nonsynonymous SNV	Tmem147:NM_027215:exon6:c.A517T:p.M173L	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	54	460	106	0.230434783	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	214	52	3	0.057692308	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999965	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	195	70	1	0.014285714	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	55	38	16	0.421052632	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.009960385	CAT	synonymous	NA	NA	NA	NA
M1	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	54	26	8	0.307692308	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	GCT	synonymous	NA	NA	NA	NA
M1	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	19	12	5	0.416666667	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9424828	ATA	synonymous	NA	NA	NA	NA
M1	chr7	35438384	12A2p6	cell line	sgMsh2	35438384	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	87	28	8	0.285714286	exonic	Cep89	nonsynonymous SNV	Cep89:NM_028120:exon19:c.G2192T:p.R731M	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997976	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	35487692	12A2p6	cell line	sgMsh2	35487692	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.561	25	0	0	NA	exonic	Tdrd12	frameshift deletion	Tdrd12:NM_001368387:exon16:c.1697delA:p.N566Tfs*14	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M1	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	94	7	0	0	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M1	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	94	44	8	0.181818182	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	72	35	5	0.142857143	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	273	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M1	chr7	43355491	12A2p6	cell line	sgMsh2	43355491	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	42	0	0	NA	exonic	Siglecf	nonsynonymous SNV	"Siglecf:NM_001271019:exon7:c.G1144A:p.A382T,Siglecf:NM_145581:exon7:c.G1144A:p.A382T"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9810812	CGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	37	4	1	0.25	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	71	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955033	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	46	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844603	CAG	synonymous	NA	NA	NA	NA
M1	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	49	39	19	0.487179487	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	123	70	27	0.385714286	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9985163	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	20	17	4	0.235294118	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9451472	AAG	synonymous	NA	NA	NA	NA
M1	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	40	1	1	1	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	CAT	synonymous	NA	NA	NA	NA
M1	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	111	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	45712581	12A2p6	cell line	sgMsh2	45712581	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	32	17	6	0.352941176	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon3:c.G431T:p.R144L,Sphk2:NM_020011:exon3:c.G431T:p.R144L,Sphk2:NM_203280:exon4:c.G431T:p.R144L"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9691708	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977634	CCT	synonymous	CTG	8	CTGCTGCT	NA
M1	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.294	57	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2	2	0.294	57	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	ATA	synonymous	NA	NA	NA	NA
M1	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	31	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9676394	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	113	106	32	0.301886792	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	61	54	8	0.148148148	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AAG	synonymous	NA	NA	NA	NA
M1	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	116	100	32	0.32	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-21035564-62476997	2.95545812	2.95545812	0	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	64268700	12A2p6	cell line	sgMsh2	64268700	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	223	0	0	NA	exonic	Trpm1	nonsynonymous SNV	Trpm1:NM_001039104:exon27:c.G4439C:p.W1480S	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9783728	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	66172255	12A2p6	cell line	sgMsh2	66172255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	77	77	17	0.220779221	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A2237G:p.H746R	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	CAC	nonsynonymous	CCA	8	CCACCACC	NA
M1	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	286	3	0	0	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	75579652	12A2p6	cell line	sgMsh2	75579652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	24	3	0.125	exonic	Akap13	nonsynonymous SNV	Akap13:NM_029332:exon4:c.A332G:p.Q111R	7qD1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9429581	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	137	113	27	0.238938053	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9813026	CAG	synonymous	AGA	8	AGAAGAAG	NA
M1	chr7	79694871	12A2p6	cell line	sgMsh2	79694871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	112	9	4	0.444444444	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A4483G:p.I1495V	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9973913	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	90	3	1	0.333333333	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9974642	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	20	44	13	0.295454545	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9451472	GCC	synonymous	NA	NA	NA	NA
M1	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	45	61	20	0.327868852	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9447272	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	80367336	12A2p6	cell line	sgMsh2	80367336	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	98	71	16	0.225352113	exonic	Man2a2	synonymous SNV	Man2a2:NM_172903:exon8:c.G984T:p.L328L	7qD2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.6823939	CCA	synonymous	NA	NA	NA	NA
M1	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	95	818	225	0.275061125	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	80759891	12A2p6	cell line	sgMsh2	80759891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	50	347	83	0.239193084	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon8:c.T695C:p.V232A	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	44	21	1	0.047619048	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CAT	synonymous	NA	NA	NA	NA
M1	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	78	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	145	2	2	1	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998887	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	52	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	139	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	GAG	synonymous	NA	NA	NA	NA
M1	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	175	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999752	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	85750887	12A2p6	cell line	sgMsh2	85750887	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	186	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.C938A:p.T313K	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	1	0.9994038	TGT	nonsynonymous	AATG	8	AATGAATG	NA
M1	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	143	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	240	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	CTG	synonymous	NA	NA	NA	NA
M1	chr7	86466026	12A2p6	cell line	sgMsh2	86466026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	228	0	0	NA	exonic	Olfr299	nonsynonymous SNV	Olfr299:NM_001011767:exon1:c.G614A:p.G205D	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999983	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.257	160	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M1	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	274	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	86811375	12A2p6	cell line	sgMsh2	86811375	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	312	0	0	NA	exonic	Vmn2r77	synonymous SNV	Vmn2r77:NM_001105188:exon6:c.C1908A:p.S636S	7qD3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.71E-08	CCT	synonymous	NA	NA	NA	NA
M1	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	104	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	TAA	synonymous	A	5	AAAAA	NA
M1	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	ATT	nonsynonymous	A	5	AAAAA	NA
M1	chr7	96823811	12A2p6	cell line	sgMsh2	96823811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	51	15	4	0.266666667	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon18:c.A2813G:p.D938G,Tenm4:NM_011858:exon18:c.A2702G:p.D901G,Tenm4:NM_001310762:exon19:c.A2810G:p.D937G"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9480151	GAC	nonsynonymous	C	5	CCCCC	NA
M1	chr7	96848089	12A2p6	cell line	sgMsh2	96848089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	86	21	6	0.285714286	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon22:c.A3692G:p.K1231R,Tenm4:NM_011858:exon22:c.A3581G:p.K1194R,Tenm4:NM_001310762:exon23:c.A3689G:p.K1230R"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.8955939	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	151	16	2	0.125	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	TCG	nonsynonymous	NA	NA	NA	NA
M1	chr7	97487387	12A2p6	cell line	sgMsh2	97487387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	90	88	21	0.238636364	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon3:c.A285G:p.S95S,Ints4:NM_027256:exon3:c.A285G:p.S95S"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.994832	CAC	synonymous	NA	NA	NA	NA
M1	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	74	37	24	0.648648649	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	82	40	27	0.675	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9795967	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	98467693	12A2p6	cell line	sgMsh2	98467693	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	74	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon14:c.G2712A:p.E904E	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	AGC	synonymous	TGAG	8	TGAGTGAG	NA
M1	chr7	98715516	12A2p6	cell line	sgMsh2	98715516	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	218	160	35	0.21875	exonic	Thap12	nonsynonymous SNV	"Thap12:NM_028410:exon5:c.C890A:p.A297D,Thap12:NM_001355114:exon6:c.C377A:p.A126D"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9999038	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	44	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	39	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	109	56	10	0.178571429	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	CAG	synonymous	CAG	8	CAGCAGCA	NA
M1	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	44	1	0	0	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9828523	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	101504587	12A2p6	cell line	sgMsh2	101504587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	102	10	3	0.3	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon17:c.T1340C:p.I447T,Pde2a:NM_001008548:exon18:c.T1361C:p.I454T,Pde2a:NM_001143848:exon18:c.T1373C:p.I458T,Pde2a:NM_001243757:exon18:c.T1304C:p.I435T,Pde2a:NM_001243758:exon18:c.T1391C:p.I464T"	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990436	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr7	102113484	12A2p6	cell line	sgMsh2	102113484	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	39	0	0	NA	exonic	Chrna10	nonsynonymous SNV	Chrna10:NM_001081424:exon4:c.G498T:p.Q166H	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9780834	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	102154007	12A2p6	cell line	sgMsh2	102154007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	187	205	54	0.263414634	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon16:c.C1985A:p.P662H,Nup98:NM_001287165:exon16:c.C1934A:p.P645H,Nup98:NM_001287166:exon16:c.C1934A:p.P645H,Nup98:NM_001287167:exon16:c.C1985A:p.P662H,Nup98:NM_022979:exon16:c.C1985A:p.P662H"	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999864	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	73	118	38	0.322033898	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.98564	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	101	157	35	0.222929936	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	93	216	54	0.25	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	GTT	synonymous	NA	NA	NA	NA
M1	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	135	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998165	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	154	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.776716272	2	0.6141345	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	102714398	12A2p6	cell line	sgMsh2	102714398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	174	0	0	NA	exonic	Olfr33	nonsynonymous SNV	Olfr33:NM_147073:exon1:c.A14T:p.K5M	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999739	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	181	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999816	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr7	103086140	12A2p6	cell line	sgMsh2	103086140	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	433	0	0	NA	exonic	Olfr584	synonymous SNV	Olfr584:NM_147054:exon1:c.C621T:p.L207L	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.06E-09	TCT	synonymous	NA	NA	NA	NA
M1	chr7	103086318	12A2p6	cell line	sgMsh2	103086318	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	300	0	0	NA	exonic	Olfr584	nonsynonymous SNV	Olfr584:NM_147054:exon1:c.C799A:p.L267I	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.86E-08	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	103155223	12A2p6	cell line	sgMsh2	103155223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	146	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A523G:p.I175V	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8557891	ATG	nonsynonymous	TGATG	10	TGATGTGATG	NA
M1	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	376	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.06E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	124	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9995466	GTA	synonymous	NA	NA	NA	NA
M1	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9985177	ATG	synonymous	NA	NA	NA	NA
M1	chr7	104159943	12A2p6	cell line	sgMsh2	104159943	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	99	0	0	NA	exonic	Olfm5	nonsynonymous SNV	Olfm5:NM_172905:exon5:c.T659G:p.L220R	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.5730702	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	359	10	0	0	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	126	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	231	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9994747	TCC	synonymous	NA	NA	NA	NA
M1	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	387	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.61E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	99	45	9	0.2	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	GAT	synonymous	NA	NA	NA	NA
M1	chr7	105434067	12A2p6	cell line	sgMsh2	105434067	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	41	0	0	NA	exonic	Cckbr	nonsynonymous SNV	Cckbr:NM_007627:exon3:c.C476T:p.P159L	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	79	37	1	0.027027027	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1	chr7	105763942	12A2p6	cell line	sgMsh2	105763942	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	29	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon7:c.A3468C:p.E1156D	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9643529	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	105764926	12A2p6	cell line	sgMsh2	105764926	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	86	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon6:c.C2681A:p.T894N	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	AGT	nonsynonymous	ACAGT	10	ACAGTACAGT	NA
M1	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	213	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999963	CCT	synonymous	NA	NA	NA	NA
M1	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	173	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	221	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	107739253	12A2p6	cell line	sgMsh2	107739253	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	180	62	24	0.387096774	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon18:c.G1600A:p.V534M,Ppfibp2:NM_001357437:exon19:c.G1819A:p.V607M,Ppfibp2:NM_001357436:exon20:c.G1852A:p.V618M,Ppfibp2:NM_001163557:exon21:c.G2050A:p.V684M,Ppfibp2:NM_008905:exon22:c.G2083A:p.V695M"	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999807	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	340	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	7.43E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M1	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	291	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	AAA	synonymous	AATG	8	AATGAATG	NA
M1	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	221	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	ATG	nonsynonymous	G	5	GGGGG	NA
M1	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	164	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	221	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	108317055	12A2p6	cell line	sgMsh2	108317055	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	194	0	0	NA	exonic	Olfr491	stopgain	Olfr491:NM_146736:exon1:c.C160T:p.Q54X	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999904	TCA	nonsynonymous	NA	NA	NA	NA
M1	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	316	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.24E-08	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.252	355	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr7	109979464	12A2p6	cell line	sgMsh2	109979464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	180	21	4	0.19047619	exonic	Tmem41b	synonymous SNV	Tmem41b:NM_153525:exon4:c.C387T:p.I129I	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999807	GGA	synonymous	NA	NA	NA	NA
M1	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	71	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9944982	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	112101759	12A2p6	cell line	sgMsh2	112101759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	132	242	69	0.285123967	exonic	Usp47	nonsynonymous SNV	"Usp47:NM_133758:exon21:c.A3116C:p.K1039T,Usp47:NM_001357952:exon22:c.A3176C:p.K1059T,Usp47:NM_177249:exon22:c.A3176C:p.K1059T"	7qF1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	114	12	2	0.166666667	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	228	504	128	0.253968254	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9999074	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	162	257	66	0.256809339	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	138	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998421	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	162	26	6	0.230769231	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	AAC	synonymous	NA	NA	NA	NA
M1	chr7	122627780	12A2p6	cell line	sgMsh2	122627780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	118	0	0	NA	exonic	Prkcb	nonsynonymous SNV	Prkcb:NM_008855:exon17:c.A1988G:p.N663S	7qF2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	25	114	28	0.245614035	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.68E-06	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	125663440	12A2p6	cell line	sgMsh2	125663440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	117	32	0.273504274	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon20:c.A3246G:p.L1082L	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9801247	CTA	synonymous	NA	NA	NA	NA
M1	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	2	0	0	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9979827	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr7	126429133	12A2p6	cell line	sgMsh2	126429133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	36	43	10	0.23255814	exonic	Rabep2	nonsynonymous SNV	Rabep2:NM_030566:exon1:c.T2C:p.M1T	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr7	126496639	12A2p6	cell line	sgMsh2	126496639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	19	23	2	0.086956522	exonic	Atxn2l	synonymous SNV	"Atxn2l:NM_001347658:exon11:c.T1065C:p.P355P,Atxn2l:NM_183020:exon11:c.T1323C:p.P441P"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9424828	AAG	synonymous	NA	NA	NA	NA
M1	chr7	126691768	12A2p6	cell line	sgMsh2	126691768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	56	22	8	0.363636364	exonic	Slx1b	nonsynonymous SNV	Slx1b:NM_029420:exon5:c.G754A:p.E252K	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	TCT	nonsynonymous	TCC	14	TCCTCTTCCTCCTC	NA
M1	chr7	126699982	12A2p6	cell line	sgMsh2	126699982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	66	0	0	NA	exonic	Coro1a	nonsynonymous SNV	"Coro1a:NM_001301374:exon11:c.A1285G:p.T429A,Coro1a:NM_009898:exon11:c.A1285G:p.T429A"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	81	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	126878763	12A2p6	cell line	sgMsh2	126878763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	179	62	13	0.209677419	exonic	Taok2	synonymous SNV	"Taok2:NM_001163774:exon8:c.A615G:p.K205K,Taok2:NM_001163775:exon8:c.A615G:p.K205K"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999797	CTT	synonymous	NA	NA	NA	NA
M1	chr7	127092271	12A2p6	cell line	sgMsh2	127092271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	36	76	31	0.407894737	exonic	AI467606	nonsynonymous SNV	AI467606:NM_178901:exon2:c.A17G:p.Q6R	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	1	0.9692344	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	127610571	12A2p6	cell line	sgMsh2	127610571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	76	6	0	0	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.T2065A:p.F689I,Zfp629:NM_177226:exon3:c.T2065A:p.F689I,Zfp629:NM_001362197:exon4:c.T2065A:p.F689I"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	89	14	4	0.285714286	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	1	0.9846639	GGG	nonsynonymous	NA	NA	NA	NA
M1	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	37	7	0	0	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.495099846	2	0.07855002	GTT	synonymous	NA	NA	NA	NA
M1	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	211	195	41	0.21025641	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999959	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	51	21	7	0.333333333	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9878588	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	115	117	22	0.188034188	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995008	CAC	synonymous	NA	NA	NA	NA
M1	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	101	119	32	0.268907563	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	173	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr7	131350824	12A2p6	cell line	sgMsh2	131350824	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	142	37	9	0.243243243	exonic	2310057M21Rik	synonymous SNV	2310057M21Rik:NM_026655:exon5:c.C927T:p.N309N	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9981538	CGT	synonymous	T	5	TTTTT	NA
M1	chr7	132262789	12A2p6	cell line	sgMsh2	132262789	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	122	20	2	0.1	exonic	Chst15	nonsynonymous SNV	"Chst15:NM_001360768:exon5:c.T1084C:p.Y362H,Chst15:NM_029935:exon5:c.T1084C:p.Y362H"	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	TAG	nonsynonymous	AGA	8	AGAAGAAG	NA
M1	chr7	133937568	12A2p6	cell line	sgMsh2	133937568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	44	12	1	0.083333333	exonic	Adam12	nonsynonymous SNV	Adam12:NM_007400:exon12:c.A1180G:p.S394G	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9756372	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	96	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M1	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	69	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	0.9886101	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	138876716	12A2p6	cell line	sgMsh2	138876716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	70	102	13	0.12745098	exonic	Ppp2r2d	nonsynonymous SNV	"Ppp2r2d:NM_026391:exon8:c.A1081G:p.S361G,Ppp2r2d:NM_001347618:exon9:c.A586G:p.S196G"	7qF4	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9952044	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	162	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	87	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M1	chr7	141272338	12A2p6	cell line	sgMsh2	141272338	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	126	0	0	NA	exonic	Cdhr5	synonymous SNV	"Cdhr5:NM_001114322:exon11:c.C1227T:p.S409S,Cdhr5:NM_028069:exon11:c.C1227T:p.S409S"	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	AGG	synonymous	NA	NA	NA	NA
M1	chr7	141357072	12A2p6	cell line	sgMsh2	141357072	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	68	84	1	0.011904762	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon11:c.930delC:p.S313Rfs*43	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.917524484	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1	chr7	141431835	12A2p6	cell line	sgMsh2	141431835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	27	23	5	0.217391304	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon7:c.C491T:p.A164V,Slc25a22:NM_001360723:exon7:c.C491T:p.A164V,Slc25a22:NM_001360724:exon7:c.C251T:p.A84V,Slc25a22:NM_026646:exon7:c.C491T:p.A164V"	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9607453	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	105	4	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991768	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	141800273	12A2p6	cell line	sgMsh2	141800273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	133	4	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon21:c.A2605G:p.T869A	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	91	3	1	0.333333333	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	GTT	synonymous	NA	NA	NA	NA
M1	chr7	141810047	12A2p6	cell line	sgMsh2	141810047	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.231	40	2	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon31:c.A7091T:p.N2364I	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	141849548	12A2p6	cell line	sgMsh2	141849548	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	77	2	2	1	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon18:c.C2245A:p.H749N	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	CCA	nonsynonymous	NA	NA	NA	NA
M1	chr7	141865305	12A2p6	cell line	sgMsh2	141865305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	90	19	0	0	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.T11987C:p.F3996S	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9959229	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	60	2	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9922276	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	54	1	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	113	254	68	0.267716535	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	152	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999216	GTA	synonymous	NA	NA	NA	NA
M1	chr7	145268112	12A2p6	cell line	sgMsh2	145268112	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	57	9	1	0.111111111	exonic	Tpcn2	nonsynonymous SNV	Tpcn2:NM_146206:exon10:c.C868A:p.L290M	7qF5	chr7-63098934-145323643	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.8415663	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	214	68	14	0.205882353	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9923507	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	131	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997758	GTA	synonymous	NA	NA	NA	NA
M1	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	335	174	32	0.183908046	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.25E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M1	chr8	8681450	12A2p6	cell line	sgMsh2	8681450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	103	173	51	0.294797688	exonic	Arglu1	nonsynonymous SNV	Arglu1:NM_176849:exon3:c.G585T:p.K195N	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	214	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.835764877	1	0.9102391	AAG	synonymous	NA	NA	NA	NA
M1	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	92	49	10	0.204081633	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	164	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	75	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8712398	TCG	synonymous	NA	NA	NA	NA
M1	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	123	65	16	0.246153846	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	123	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.5407336	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	16002576	12A2p6	cell line	sgMsh2	16002576	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	115	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon43:c.G6547A:p.G2183R	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713125466	2	0.8818556	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	86	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	52	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr8	19023522	12A2p6	cell line	sgMsh2	19023522	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	116	0	0	NA	exonic	Defb38	nonsynonymous SNV	Defb38:NM_183036:exon2:c.A134G:p.Y45C	8qA1.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr8	19228015	12A2p6	cell line	sgMsh2	19228015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	0	0	NA	exonic	Defb6	synonymous SNV	Defb6:NM_054074:exon2:c.T102C:p.Y34Y	8qA1.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	ATG	synonymous	NA	NA	NA	NA
M1	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	90	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr8	22626792	12A2p6	cell line	sgMsh2	22626792	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	95	0	0	NA	exonic	Dkk4	synonymous SNV	Dkk4:NM_145592:exon4:c.G420A:p.Q140Q	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9929442	AGG	synonymous	CAGGA	10	CAGGACAGGA	NA
M1	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	199	3	1	0.333333333	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999925	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	171	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	NA	NA	GAG	frameshift	NA	NA	NA	-1
M1	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	74	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	7.43E-07	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	25	4	0.16	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.9979079	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	100	41	11	0.268292683	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.749463069	2	0.6102481	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	64	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	33573572	12A2p6	cell line	sgMsh2	33573572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	133	2	0	0	exonic	Tex15	nonsynonymous SNV	Tex15:NM_031374:exon1:c.A3029G:p.D1010G	8qA3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997972	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	61	85	22	0.258823529	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GGG	synonymous	NA	NA	NA	NA
M1	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	92	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984234	GTT	synonymous	NA	NA	NA	NA
M1	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	168	100	33	0.33	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9984059	CTA	synonymous	NA	NA	NA	NA
M1	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	438	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.05E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	43520415	12A2p6	cell line	sgMsh2	43520415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	579	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A1549G:p.M517V	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	507	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	122	241	39	0.161825726	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	45026524	12A2p6	cell line	sgMsh2	45026524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	199	261	79	0.302681992	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon9:c.T8537C:p.V2846A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999925	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	45342487	12A2p6	cell line	sgMsh2	45342487	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	97	141	35	0.24822695	exonic	Fam149a	synonymous SNV	Fam149a:NM_153535:exon11:c.C1986T:p.S662S	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998772	GGG	synonymous	NA	NA	NA	NA
M1	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	155	42	11	0.261904762	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9994583	CAC	synonymous	NA	NA	NA	NA
M1	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	156	60	14	0.233333333	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999358	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	78	73	1	0.01369863	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M1	chr8	47542785	12A2p6	cell line	sgMsh2	47542785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	121	151	41	0.271523179	exonic	Rwdd4a	nonsynonymous SNV	Rwdd4a:NM_203507:exon3:c.T199C:p.F67L	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996303	CTT	nonsynonymous	T	5	TTTTT	NA
M1	chr8	48235575	12A2p6	cell line	sgMsh2	48235575	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	146	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon25:c.G6928T:p.G2310W,Tenm3:NM_011857:exon27:c.G6976T:p.G2326W"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.903897883	1	0.9937286	CCG	nonsynonymous	NA	NA	NA	NA
M1	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	82	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	186	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	148	13	0	0	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9959351	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	139	13	7	0.538461538	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998498	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	134	82	24	0.292682927	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998071	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr8	58472973	12A2p6	cell line	sgMsh2	58472973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	78	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon3:c.A257C:p.E86A	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	120	44	14	0.318181818	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	ATA	synonymous	NA	NA	NA	NA
M1	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	57	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9760298	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	130	33	3	0.090909091	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997643	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	132	24	7	0.291666667	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	69870630	12A2p6	cell line	sgMsh2	69870630	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	160	6	2	0.333333333	exonic	Pbx4	synonymous SNV	"Pbx4:NM_001357308:exon6:c.G456A:p.L152L,Pbx4:NM_001024954:exon7:c.G990A:p.L330L"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999475	TGC	synonymous	NA	NA	NA	NA
M1	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	177	599	158	0.263772955	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899355683	1	0.9959891	CGA	synonymous	NA	NA	NA	NA
M1	chr8	69911801	12A2p6	cell line	sgMsh2	69911801	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	52	106	20	0.188679245	exonic	Gatad2a	nonsynonymous SNV	Gatad2a:NM_001286450:exon12:c.A1585G:p.T529A	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884447	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	56	33	7	0.212121212	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9904109	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	70331475	12A2p6	cell line	sgMsh2	70331475	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	78	6	0	0	exonic	Gdf1	stoploss	"Gdf1:NM_008107:exon2:c.T1072G:p.X358G,Gdf1:NM_001163282:exon8:c.T1072G:p.X358G"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	68	41	12	0.292682927	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9947786	CTG	synonymous	NA	NA	NA	NA
M1	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	148	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	69	15	3	0.2	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M1	chr8	72483927	12A2p6	cell line	sgMsh2	72483927	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	66	65	18	0.276923077	exonic	Slc35e1	nonsynonymous SNV	Slc35e1:NM_177766:exon6:c.A1069T:p.S357C	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9942321	CTG	nonsynonymous	CTG	8	CTGCTGCT	NA
M1	chr8	72495678	12A2p6	cell line	sgMsh2	72495678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	83	27	7	0.259259259	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1576G:p.T526A	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975286	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	92	27	7	0.259259259	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9931093	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	40	145	32	0.220689655	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9727578	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	79175953	12A2p6	cell line	sgMsh2	79175953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	117	43	11	0.255813953	exonic	Zfp827	nonsynonymous SNV	"Zfp827:NM_001294279:exon9:c.A2495G:p.H832R,Zfp827:NM_178267:exon9:c.A2495G:p.H832R"	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995483	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	79663746	12A2p6	cell line	sgMsh2	79663746	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	129	209	47	0.224880383	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon12:c.G984A:p.K328K,Otud4:NM_001256033:exon12:c.G987A:p.K329K"	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	AGC	synonymous	NA	NA	NA	NA
M1	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	113	2	0	0	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr8	83269168	12A2p6	cell line	sgMsh2	83269168	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	151	2	0	0	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon17:c.A2300C:p.N767T,Tbc1d9:NM_001111304:exon20:c.A2999C:p.N1000T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	54	167	33	0.19760479	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M1	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	113	84	14	0.166666667	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	55	132	16	0.121212121	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	2	0.000822583	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	156	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.912982284	1	0.9966614	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	78	73	19	0.260273973	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	TTT	nonsynonymous	G	5	GGGGG	NA
M1	chr8	90248274	12A2p6	cell line	sgMsh2	90248274	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	47	0	0	NA	exonic	Tox3	stoploss	Tox3:NM_172913:exon7:c.A1728C:p.X576Y	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	12	1	0.083333333	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999807	ATC	synonymous	NA	NA	NA	NA
M1	chr8	92981967	12A2p6	cell line	sgMsh2	92981967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	0	0	NA	exonic	Slc6a2	nonsynonymous SNV	Slc6a2:NM_009209:exon4:c.T710C:p.L237P	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
M1	chr8	93319882	12A2p6	cell line	sgMsh2	93319882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	233	0	0	NA	exonic	Ces1g	nonsynonymous SNV	Ces1g:NM_021456:exon9:c.G1014T:p.K338N	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	TCT	nonsynonymous	NA	NA	NA	NA
M1	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.993621	CAA	synonymous	NA	NA	NA	NA
M1	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	71	28	6	0.214285714	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.935693286	1	0.983203	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	48	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9859196	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	66	101	13	0.128712871	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.75854747	1	9.00E-06	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	86	252	53	0.21031746	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	211	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9999078	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	161	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	57	126	25	0.198412698	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	TCG	nonsynonymous	NA	NA	NA	NA
M1	chr8	104526304	12A2p6	cell line	sgMsh2	104526304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	106	261	53	0.203065134	exonic	Nae1	nonsynonymous SNV	Nae1:NM_144931:exon7:c.A487G:p.R163G	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	149	15	0.100671141	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.790342873	1	0.7432261	CTT	synonymous	NA	NA	NA	NA
M1	chr8	104618259	12A2p6	cell line	sgMsh2	104618259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	197	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon10:c.C1223T:p.T408I,Cdh16:NM_001252628:exon11:c.C1313T:p.T438I,Cdh16:NM_007663:exon11:c.C1313T:p.T438I"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	TGT	nonsynonymous	NA	NA	NA	NA
M1	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	269	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GAC	synonymous	NA	NA	NA	NA
M1	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	109	216	49	0.226851852	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.9254401	AAT	nonsynonymous	NA	NA	NA	NA
M1	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	96	25	7	0.28	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	92	37	1	0.027027027	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	126	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	126	47	8	0.170212766	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	1	0.8568967	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	113	8	1	0.125	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	70	116	21	0.181034483	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9952736	GGC	synonymous	NA	NA	NA	NA
M1	chr8	106131579	12A2p6	cell line	sgMsh2	106131579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	38	5	0.131578947	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon15:c.C2069T:p.A690V	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999254	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	40	17	3	0.176470588	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	88	18	9	0.5	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980747	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	106555450	12A2p6	cell line	sgMsh2	106555450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	50	9	1	0.111111111	exonic	Cdh3	stoploss	"Cdh3:NM_001037809:exon16:c.G2469T:p.X823Y,Cdh3:NM_007665:exon16:c.G2466T:p.X822Y"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9637265	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr8	107183583	12A2p6	cell line	sgMsh2	107183583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	169	531	141	0.265536723	exonic	Cyb5b	nonsynonymous SNV	Cyb5b:NM_025558:exon5:c.G356T:p.W119L	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999665	TGG	nonsynonymous	NA	NA	NA	NA
M1	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	87	47	9	0.191489362	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.64953466	2	0.9358739	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	104	36	13	0.361111111	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	GAG	synonymous	NA	NA	NA	NA
M1	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	74	76	19	0.25	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.740378668	2	8.58E-06	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M1	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	385	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.68E-09	ACA	synonymous	NA	NA	NA	NA
M1	chr8	109954634	12A2p6	cell line	sgMsh2	109954634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	24	1	0	0	exonic	Marveld3	nonsynonymous SNV	Marveld3:NM_028584:exon3:c.A628G:p.I210V	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9546678	ATC	nonsynonymous	C	5	CCCCC	NA
M1	chr8	110365407	12A2p6	cell line	sgMsh2	110365407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	78	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon10:c.A1211G:p.K404R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9264875	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	136	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813053875	1	0.7764842	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	65	41	12	0.292682927	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939379	TAC	synonymous	NA	NA	NA	NA
M1	chr8	110859934	12A2p6	cell line	sgMsh2	110859934	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	91	155	40	0.258064516	exonic	Cog4	nonsynonymous SNV	"Cog4:NM_001310607:exon8:c.A820T:p.I274F,Cog4:NM_133973:exon8:c.A1039T:p.I347F"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983426	AAT	nonsynonymous	A	5	AAAAA	NA
M1	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	122	623	158	0.253611557	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.997873	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	149	10	2	0.2	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999089	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	73	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.9892142	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	113637832	12A2p6	cell line	sgMsh2	113637832	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	34	9	1	0.111111111	exonic	Mon1b	synonymous SNV	"Mon1b:NM_173015:exon2:c.C240T:p.A80A,Mon1b:NM_001048143:exon3:c.C240T:p.A80A"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799427274	1	0.8264265	CCT	synonymous	GCA	8	GCAGCAGC	NA
M1	chr8	114236685	12A2p6	cell line	sgMsh2	114236685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	80	0	0	NA	exonic	Vat1l	nonsynonymous SNV	Vat1l:NM_173016:exon3:c.T460G:p.S154A	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.599570455	2	0.9684239	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	75	43	10	0.23255814	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	122360632	12A2p6	cell line	sgMsh2	122360632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	81	0	0	NA	exonic	Trhr2	nonsynonymous SNV	Trhr2:NM_133202:exon2:c.T68C:p.V23A	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972691	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	97	165	40	0.242424242	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9903105	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M1	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	53	1	0	0	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	53	91	23	0.252747253	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr8	122585029	12A2p6	cell line	sgMsh2	122585029	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	41	8	0.195121951	exonic	Galns	nonsynonymous SNV	"Galns:NM_001193645:exon10:c.C1001T:p.T334I,Galns:NM_016722:exon12:c.C1241T:p.T414I"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9546678	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	67	3	1	0.333333333	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	GGC	synonymous	NA	NA	NA	NA
M1	chr8	123235758	12A2p6	cell line	sgMsh2	123235758	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	22	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon1:c.C63T:p.G21G,Spata2l:NM_001357301:exon2:c.C63T:p.G21G,Spata2l:NM_030176:exon2:c.C63T:p.G21G"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	GGC	synonymous	GCCGC	10	GCCGCGCCGC	NA
M1	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	116	3	0	0	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.831222677	1	0.8752031	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M1	chr8	123487375	12A2p6	cell line	sgMsh2	123487375	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	273	143	40	0.27972028	exonic	Afg3l1	nonsynonymous SNV	Afg3l1:NM_054070:exon6:c.T554G:p.V185G	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	68	58	10	0.172413793	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.767631871	1	0.6560961	CCC	nonsynonymous	NA	NA	NA	NA
M1	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	69	22	7	0.318181818	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	191	34	7	0.205882353	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999889	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	101	125	41	0.328	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989946	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	43	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9248375	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	89	36	9	0.25	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	244	3	1	0.333333333	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9919682	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	147	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998993	ATG	synonymous	GAT	8	GATGATGA	NA
M1	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	77	13	1	0.076923077	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9954061	TCA	synonymous	NA	NA	NA	NA
M1	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	183	330	91	0.275757576	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999834	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	7348756	12A2p6	cell line	sgMsh2	7348756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	162	0	0	NA	exonic	Mmp12	nonsynonymous SNV	"Mmp12:NM_001320076:exon2:c.T127C:p.C43R,Mmp12:NM_008605:exon2:c.T286C:p.C96R,Mmp12:NM_001320077:exon3:c.T76C:p.C26R"	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999525	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr9	7572030	12A2p6	cell line	sgMsh2	7572030	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	108	0	0	NA	exonic	Mmp27	nonsynonymous SNV	Mmp27:NM_001310717:exon2:c.T230A:p.L77H	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894813482	1	0.9809563	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	8649457	12A2p6	cell line	sgMsh2	8649457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	113	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.T1667C:p.I556T	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.9163524	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr9	14751356	12A2p6	cell line	sgMsh2	14751356	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	17	5	0.294117647	exonic	Fut4	nonsynonymous SNV	Fut4:NM_010242:exon1:c.A641C:p.K214T	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.269	109	68	13	0.191176471	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	100	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998943	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	140	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1	chr9	18857019	12A2p6	cell line	sgMsh2	18857019	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	170	0	0	NA	exonic	Olfr829	synonymous SNV	Olfr829:NM_147067:exon1:c.C393A:p.R131R	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999682	GCT	synonymous	NA	NA	NA	NA
M1	chr9	19036033	12A2p6	cell line	sgMsh2	19036033	A	T	SNV	Mutect2;MuSe;Vardict	3	0.25	74	0	0	NA	exonic	Olfr835	nonsynonymous SNV	Olfr835:NM_001012266:exon1:c.A909T:p.K303N	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	AAT	nonsynonymous	A	5	AAAAA	NA
M1	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	154	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	TAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	96	31	5	0.161290323	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987091	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	76	19	3	0.157894737	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CAA	nonsynonymous	A	5	AAAAA	NA
M1	chr9	21309648	12A2p6	cell line	sgMsh2	21309648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	76	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon2:c.A187C:p.S63R,Ap1m2:NM_009678:exon2:c.A187C:p.S63R"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9964953	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	21341973	12A2p6	cell line	sgMsh2	21341973	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	116	173	34	0.196531792	exonic	Slc44a2	synonymous SNV	"Slc44a2:NM_001199186:exon4:c.C189T:p.Y63Y,Slc44a2:NM_001359227:exon4:c.C189T:p.Y63Y,Slc44a2:NM_152808:exon4:c.C195T:p.Y65Y"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	ACC	synonymous	NA	NA	NA	NA
M1	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	54	191	46	0.240837696	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	21592072	12A2p6	cell line	sgMsh2	21592072	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	107	106	19	0.179245283	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon2:c.G178A:p.D60N,Yipf2:NM_138303:exon2:c.G178A:p.D60N,Yipf2:NM_001205157:exon3:c.G178A:p.D60N,Yipf2:NM_001205158:exon3:c.G178A:p.D60N,Yipf2:NM_001359299:exon3:c.G178A:p.D60N"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9338838	TCA	nonsynonymous	NA	NA	NA	NA
M1	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	54	159	41	0.257861635	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.926608885	1	0.9675285	GCT	synonymous	NA	NA	NA	NA
M1	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	22	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9501249	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M1	chr9	26975734	12A2p6	cell line	sgMsh2	26975734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	86	23	5	0.217391304	exonic	Acad8	nonsynonymous SNV	Acad8:NM_025862:exon11:c.A1216G:p.I406V	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9978724	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	124	29	7	0.24137931	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	TAC	synonymous	NA	NA	NA	NA
M1	chr9	27082497	12A2p6	cell line	sgMsh2	27082497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	104	28	11	0.392857143	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A652G:p.S218G,Ncapd3:NM_178113:exon26:c.A3178G:p.S1060G"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	123	43	14	0.325581395	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M1	chr9	27323243	12A2p6	cell line	sgMsh2	27323243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	82	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon11:c.T1403C:p.L468P,Igsf9b:NM_001384263:exon11:c.T1403C:p.L468P,Igsf9b:NM_001384264:exon11:c.T1403C:p.L468P"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974021	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	29	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9643529	TCC	nonsynonymous	NA	NA	NA	NA
M1	chr9	30429240	12A2p6	cell line	sgMsh2	30429240	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	45	43	12	0.279069767	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon1:c.C1673T:p.T558I	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.663161261	2	0.5778846	ACA	nonsynonymous	NA	NA	NA	NA
M1	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	94	40	6	0.15	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985734	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	49	376	66	0.175531915	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9865977	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	63	11	4	0.363636364	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933039	CGC	synonymous	NA	NA	NA	NA
M1	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	216	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	TAG	synonymous	NA	NA	NA	NA
M1	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	73	222	42	0.189189189	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	1	0.9926459	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	168	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999648	AGG	synonymous	NA	NA	NA	NA
M1	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	61	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	37544088	12A2p6	cell line	sgMsh2	37544088	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.139	45	0	0	NA	exonic	Vsig2	synonymous SNV	Vsig2:NM_020518:exon7:c.T933G:p.S311S	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631365858	2	0.6734147	CTC	synonymous	NA	NA	NA	NA
M1	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	75	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9963161	TAT	synonymous	NA	NA	NA	NA
M1	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	265	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	GTA	synonymous	NA	NA	NA	NA
M1	chr9	37992995	12A2p6	cell line	sgMsh2	37992995	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	301	0	0	NA	exonic	Olfr881	nonsynonymous SNV	Olfr881:NM_146418:exon1:c.G502A:p.V168I	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.63E-08	GGT	nonsynonymous	NA	NA	NA	NA
M1	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	118	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	164	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999957	AGA	nonsynonymous	NA	NA	NA	NA
M1	chr9	38109488	12A2p6	cell line	sgMsh2	38109488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	180	0	0	NA	exonic	Olfr888	synonymous SNV	Olfr888:NM_146424:exon1:c.T801C:p.S267S	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9877004	CTA	synonymous	NA	NA	NA	NA
M1	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	410	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.958404288	1	2.88E-08	GTT	synonymous	NA	NA	NA	NA
M1	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	231	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999985	TTT	synonymous	NA	NA	NA	NA
M1	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	226	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999981	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	38815900	12A2p6	cell line	sgMsh2	38815900	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	219	0	0	NA	exonic	Olfr922	synonymous SNV	Olfr922:NM_146781:exon1:c.C396T:p.Y132Y	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.97657309	1	0.9999878	ACA	synonymous	NA	NA	NA	NA
M1	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	243	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	GCA	nonsynonymous	NA	NA	NA	NA
M1	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	281	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	224	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999979	CCT	synonymous	NA	NA	NA	NA
M1	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	211	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999959	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	168	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999648	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	233	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	230	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.863018079	1	0.9849026	CTG	synonymous	NA	NA	NA	NA
M1	chr9	39737754	12A2p6	cell line	sgMsh2	39737754	A	-	Deletion	Strelka2;Vardict	2	0.2414	58	0	0	NA	exonic	Olfr150	stoploss	Olfr150:NM_146609:exon1:c.938delA:p.*313del	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	nonsynonymous	A	10	AAAAAAAAAA	-1
M1	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	261	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.999999	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	39819724	12A2p6	cell line	sgMsh2	39819724	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	213	0	0	NA	exonic	Olfr970	synonymous SNV	Olfr970:NM_146611:exon1:c.C84T:p.F28F	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999963	TCC	synonymous	TCC	8	TCCTCCTC	NA
M1	chr9	39910334	12A2p6	cell line	sgMsh2	39910334	-	T	Insertion	Strelka2;Vardict	2	0.2444	180	0	0	NA	exonic	Olfr229	frameshift insertion	Olfr229:NM_146613:exon1:c.531dupT:p.C179Lfs*1	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAT	frameshift	T	5	TTTTT	1
M1	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	47	3	0	0	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9852076	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	161	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.685872263	2	0.992086	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M1	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Vardict	2	0.148	28	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.672245662	1	0.637601	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	148	78	21	0.269230769	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	CAG	synonymous	NA	NA	NA	NA
M1	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	72	6	0	0	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9957219	CAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	44075494	12A2p6	cell line	sgMsh2	44075494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	55	0	0	NA	exonic	Usp2	nonsynonymous SNV	"Usp2:NM_016808:exon2:c.T88C:p.Y30H,Usp2:NM_198092:exon2:c.T88C:p.Y30H"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.944777687	1	0.9762051	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr9	44105221	12A2p6	cell line	sgMsh2	44105221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	56	0	0	NA	exonic	Mfrp	synonymous SNV	"Mfrp:NM_001190314:exon10:c.G1212T:p.T404T,Mfrp:NM_147126:exon10:c.G1212T:p.T404T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9905212	CGG	synonymous	NA	NA	NA	NA
M1	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	37	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	ACG	synonymous	NA	NA	NA	NA
M1	chr9	44402367	12A2p6	cell line	sgMsh2	44402367	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	97	21	2	0.095238095	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.T1189G:p.F397V,Slc37a4:NM_001293630:exon9:c.T1189G:p.F397V,Slc37a4:NM_001293631:exon9:c.T1189G:p.F397V,Slc37a4:NM_001378830:exon9:c.T1189G:p.F397V,Slc37a4:NM_001378834:exon9:c.T1102G:p.F368V,Slc37a4:NM_001357729:exon10:c.T1252G:p.F418V,Slc37a4:NM_001357730:exon10:c.T1252G:p.F418V,Slc37a4:NM_001378829:exon10:c.T1252G:p.F418V,Slc37a4:NM_001378831:exon10:c.T1165G:p.F389V,Slc37a4:NM_001378832:exon10:c.T1165G:p.F389V,Slc37a4:NM_001378833:exon10:c.T1165G:p.F389V"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.858475879	1	0.9371096	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	44402403	12A2p6	cell line	sgMsh2	44402403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	95	35	5	0.142857143	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.G1225A:p.V409I,Slc37a4:NM_001293630:exon9:c.G1225A:p.V409I,Slc37a4:NM_001293631:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378830:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378834:exon9:c.G1138A:p.V380I,Slc37a4:NM_001357729:exon10:c.G1288A:p.V430I,Slc37a4:NM_001357730:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378829:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378831:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378832:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378833:exon10:c.G1201A:p.V401I"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9986429	AGT	nonsynonymous	NA	NA	NA	NA
M1	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.491	179	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M1	chr9	44500808	12A2p6	cell line	sgMsh2	44500808	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	63	105	30	0.285714286	exonic	Bcl9l	frameshift deletion	Bcl9l:NM_030256:exon3:c.90delC:p.P32Lfs*12	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98111529	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	37	46	5	0.108695652	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9758317	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	44796345	12A2p6	cell line	sgMsh2	44796345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	43	3	2	0.666666667	exonic	Tmem25	nonsynonymous SNV	"Tmem25:NM_001357385:exon3:c.A652C:p.S218R,Tmem25:NM_001357386:exon3:c.A652C:p.S218R,Tmem25:NM_001357383:exon4:c.A724C:p.S242R,Tmem25:NM_001357384:exon4:c.A652C:p.S218R,Tmem25:NM_027865:exon4:c.A652C:p.S218R"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9819881	CTA	nonsynonymous	NA	NA	NA	NA
M1	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	77	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966658	TGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	45919870	12A2p6	cell line	sgMsh2	45919870	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	123	19	3	0.157894737	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon12:c.C1507T:p.H503Y,Pcsk7:NM_008794:exon12:c.C1507T:p.H503Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	CCA	nonsynonymous	C	5	CCCCC	NA
M1	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	89	31	6	0.193548387	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9863447	CTC	synonymous	NA	NA	NA	NA
M1	chr9	46230167	12A2p6	cell line	sgMsh2	46230167	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	36	9	1	0.111111111	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.C560T:p.A187V	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9746227	GCG	nonsynonymous	NA	NA	NA	NA
M1	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	40	10	1	0.1	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.979131	GAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	199	19	2	0.105263158	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9656782	TTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	52120331	12A2p6	cell line	sgMsh2	52120331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	120	19	4	0.210526316	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon4:c.G1034A:p.R345H,Zc3h12c:NM_001368810:exon4:c.G977A:p.R326H"	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	ACG	nonsynonymous	NA	NA	NA	NA
M1	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	36	0	0	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9999701	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	99	5	1	0.2	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	CAT	synonymous	NA	NA	NA	NA
M1	chr9	55430309	12A2p6	cell line	sgMsh2	55430309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	13	1	0	0	exonic	Tmem266	nonsynonymous SNV	"Tmem266:NM_001357568:exon9:c.A428G:p.Q143R,Tmem266:NM_172923:exon9:c.A803G:p.Q268R"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9236512	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	683	66	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.145350413	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	175	74	20	0.27027027	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.803969474	1	0.6478725	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M1	chr9	56898498	12A2p6	cell line	sgMsh2	56898498	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	74	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon10:c.G6592A:p.V2198I	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.881186881	1	0.9520453	CGT	nonsynonymous	NA	NA	NA	NA
M1	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	45	24	7	0.291666667	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9836758	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	57592356	12A2p6	cell line	sgMsh2	57592356	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	129	29	5	0.172413793	exonic	Ulk3	nonsynonymous SNV	Ulk3:NM_027895:exon6:c.T639G:p.F213L	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87210248	1	0.9705626	TTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	111	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993902	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	109	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972030889	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	161	11	5	0.454545455	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99995	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	132	2654	417	0.157121326	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997868	GGA	nonsynonymous	NA	NA	NA	NA
M1	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	102	86	25	0.290697674	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990199691	1	0.9987207	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr9	61927590	12A2p6	cell line	sgMsh2	61927590	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	124	198	46	0.232323232	exonic	Kif23	nonsynonymous SNV	Kif23:NM_024245:exon11:c.G1116T:p.E372D	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	CCT	nonsynonymous	NA	NA	NA	NA
M1	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	53	16	3	0.1875	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	GAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	62919463	12A2p6	cell line	sgMsh2	62919463	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	72	96	6	0.0625	exonic	Pias1	frameshift deletion	Pias1:NM_019663:exon6:c.716delA:p.N239Tfs*46	9qB	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chr9	64308385	12A2p6	cell line	sgMsh2	64308385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	130	62	12	0.193548387	exonic	Dis3l	nonsynonymous SNV	"Dis3l:NM_001001295:exon15:c.A2576G:p.Q859R,Dis3l:NM_001177784:exon15:c.A2327G:p.Q776R,Dis3l:NM_172519:exon15:c.A2327G:p.Q776R"	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.999284092	1	0.9997578	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	64728343	12A2p6	cell line	sgMsh2	64728343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	101	512	106	0.20703125	exonic	Rab11a	nonsynonymous SNV	Rab11a:NM_017382:exon2:c.A127G:p.T43A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	1	0.9853272	GTA	nonsynonymous	NA	NA	NA	NA
M1	chr9	64912729	12A2p6	cell line	sgMsh2	64912729	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	61	29	6	0.206896552	exonic	Dennd4a	nonsynonymous SNV	Dennd4a:NM_001162917:exon34:c.A5462C:p.N1821T	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	180	58	12	0.206896552	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.953862088	1	0.999783	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	78	20	8	0.4	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968281	GTA	synonymous	NA	NA	NA	NA
M1	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	103	27	7	0.259259259	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M1	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	185	17	6	0.352941176	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922066685	1	0.9989979	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	31	4	0.129032258	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9801295	GGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	106	113	52	0.460176991	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999217	GCT	synonymous	NA	NA	NA	NA
M1	chr9	71215941	12A2p6	cell line	sgMsh2	71215941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	57	0	0	NA	exonic	Aldh1a2	nonsynonymous SNV	Aldh1a2:NM_009022:exon1:c.A95G:p.N32S	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9340475	AAC	nonsynonymous	CGCCCA	12	CGCCCACGCCCA	NA
M1	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	125	99	24	0.242424242	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	GTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	72618070	12A2p6	cell line	sgMsh2	72618070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	148	94	15	0.159574468	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A2541G:p.I847M	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999042	TAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.9992967	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	121	100	27	0.27	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996303	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	110	6	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999359	AAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	73931296	12A2p6	cell line	sgMsh2	73931296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	215	13	1	0.076923077	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.A2272G:p.S758G	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999967	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	73933313	12A2p6	cell line	sgMsh2	73933313	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	163	7	0	0	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.C255T:p.D85D	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.817596075	1	0.7927627	AGT	synonymous	NA	NA	NA	NA
M1	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	160	31	6	0.193548387	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999475	AAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	155	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999325	ATG	nonsynonymous	NA	NA	NA	NA
M1	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	122	25373	5699	0.224608836	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996483	TTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	123	1	0	0	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996655	GTT	synonymous	NA	NA	NA	NA
M1	chr9	79651469	12A2p6	cell line	sgMsh2	79651469	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	109	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon34:c.C5713A:p.L1905M	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993261	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr9	79819645	12A2p6	cell line	sgMsh2	79819645	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	238	0	0	NA	exonic	Filip1	frameshift deletion	"Filip1:NM_001357354:exon2:c.947delA:p.K316Rfs*4,Filip1:NM_001081243:exon5:c.1691delA:p.K564Rfs*4,Filip1:NM_001357352:exon5:c.1736delA:p.K579Rfs*4,Filip1:NM_001357353:exon5:c.1691delA:p.K564Rfs*4"	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1	chr9	81632326	12A2p6	cell line	sgMsh2	81632326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	10	8	0.8	exonic	Htr1b	nonsynonymous SNV	Htr1b:NM_010482:exon2:c.T227C:p.L76P	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.949319887	1	0.9952242	TAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	118	114	29	0.254385965	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	TAC	synonymous	NA	NA	NA	NA
M1	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	143	1	0	0	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2105	38	124	5	0.040322581	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.956133188	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M1	chr9	86550146	12A2p6	cell line	sgMsh2	86550146	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	144	17	1	0.058823529	exonic	Dop1a	frameshift deletion	Dop1a:NM_177208:exon37:c.6932delA:p.N2312Ifs*21	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.826680476	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	112	73	22	0.301369863	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	TAG	synonymous	NA	NA	NA	NA
M1	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	79	24	4	0.166666667	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969825	TTT	nonsynonymous	T	5	TTTTT	NA
M1	chr9	88463127	12A2p6	cell line	sgMsh2	88463127	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	112	304	114	0.375	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.C542A:p.P181H,Syncrip:NM_001284328:exon8:c.C836A:p.P279H,Syncrip:NM_019666:exon8:c.C836A:p.P279H,Syncrip:NM_019796:exon8:c.C836A:p.P279H"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99942	AGG	nonsynonymous	NA	NA	NA	NA
M1	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	61	63	10	0.158730159	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9926042	AAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	95405962	12A2p6	cell line	sgMsh2	95405962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	14	0	0	NA	exonic	Chst2	synonymous SNV	Chst2:NM_018763:exon2:c.T330C:p.P110P	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9271657	CAG	synonymous	NA	NA	NA	NA
M1	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	82	36	15	0.416666667	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.876644681	1	0.9527221	GAA	nonsynonymous	T	5	TTTTT	NA
M1	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.2256	164	81	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M1	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988889	TAC	synonymous	NA	NA	NA	NA
M1	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	93	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985003	TAT	nonsynonymous	NA	NA	NA	NA
M1	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.356	62	15	1	0.066666667	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1	chr9	99642569	12A2p6	cell line	sgMsh2	99642569	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	136	36	1	0.027777778	exonic	Dzip1l	frameshift deletion	"Dzip1l:NM_001311142:exon5:c.742delA:p.K250Sfs*16,Dzip1l:NM_028258:exon5:c.742delA:p.K250Sfs*16"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	222	66	9	0.136363636	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999976	GAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	67	70	10	0.142857143	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9945121	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	64	69	10	0.144927536	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936287	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	101102029	12A2p6	cell line	sgMsh2	101102029	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	120	55	12	0.218181818	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T1601C:p.I534T,Msl2:NM_001379344:exon3:c.T1379C:p.I460T"	9qE4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996113	ATT	nonsynonymous	NA	NA	NA	NA
M1	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	207	146	27	0.184931507	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.853933679	1	0.9676098	AAC	synonymous	NA	NA	NA	NA
M1	chr9	105295473	12A2p6	cell line	sgMsh2	105295473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	62	0	0	NA	exonic	Nek11	nonsynonymous SNV	Nek11:NM_172461:exon10:c.A986G:p.Q329R	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9929627	CTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	105300134	12A2p6	cell line	sgMsh2	105300134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	114	0	0	NA	exonic	Nek11	synonymous SNV	Nek11:NM_172461:exon8:c.G807A:p.L269L	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994752	TCA	synonymous	NA	NA	NA	NA
M1	chr9	105715324	12A2p6	cell line	sgMsh2	105715324	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	152	0	0	NA	exonic	Col6a6	frameshift deletion	Col6a6:NM_001102607:exon30:c.5185delT:p.S1729Pfs*46	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.931151086	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	136	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998254	ATC	nonsynonymous	NA	NA	NA	NA
M1	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	119	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.754005269	2	0.6741217	CAA	nonsynonymous	NA	NA	NA	NA
M1	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	69	2	0	0	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9950322	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	52	74	17	0.22972973	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849391478	1	0.8972594	GCT	synonymous	NA	NA	NA	NA
M1	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	57	69	18	0.260869565	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9909798	ACT	nonsynonymous	NA	NA	NA	NA
M1	chr9	107257132	12A2p6	cell line	sgMsh2	107257132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	143	30	2	0.066666667	exonic	Mapkapk3	nonsynonymous SNV	"Mapkapk3:NM_001316691:exon7:c.T721C:p.W241R,Mapkapk3:NM_178907:exon10:c.T932C:p.V311A"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999877	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	102	2	0	0	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.940235487	1	0.9943771	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	128	140	25	0.178571429	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997395	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	107907764	12A2p6	cell line	sgMsh2	107907764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	93	15	3	0.2	exonic	Mst1r	nonsynonymous SNV	Mst1r:NM_009074:exon1:c.A620G:p.E207G	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.86756028	1	0.9484515	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	108050857	12A2p6	cell line	sgMsh2	108050857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	129	58	11	0.189655172	exonic	Gmppb	nonsynonymous SNV	"Gmppb:NM_177910:exon7:c.A649G:p.M217V,Gmppb:NM_001357682:exon8:c.A649G:p.M217V"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997522	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M1	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	169	29	7	0.24137931	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999665	CAC	nonsynonymous	NA	NA	NA	NA
M1	chr9	108053855	12A2p6	cell line	sgMsh2	108053855	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	2	0	0	exonic	Amigo3	nonsynonymous SNV	Amigo3:NM_177275:exon1:c.T476A:p.L159H	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995704	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	108088344	12A2p6	cell line	sgMsh2	108088344	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.334	33	69	0	0	exonic	Apeh	frameshift insertion	Apeh:NM_146226:exon14:c.1215dupG:p.S406Vfs*10	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAC	frameshift	C	5	CCCCC	1
M1	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	116	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995252	CTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	77	131	24	0.183206107	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.908440084	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1	chr9	108513106	12A2p6	cell line	sgMsh2	108513106	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	215	46	0.213953488	exonic	Qars	nonsynonymous SNV	Qars:NM_133794:exon14:c.T1205G:p.L402R	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999254	CTT	nonsynonymous	NA	NA	NA	NA
M1	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	58	5	3	0.6	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914163	CCT	synonymous	NA	NA	NA	NA
M1	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	80	89	21	0.235955056	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9971293	TAC	synonymous	NA	NA	NA	NA
M1	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	93	13	1	0.076923077	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840307077	1	0.8978756	GTG	synonymous	NA	NA	NA	NA
M1	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	50	9	2	0.222222222	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9872436	GTC	nonsynonymous	NA	NA	NA	NA
M1	chr9	109090926	12A2p6	cell line	sgMsh2	109090926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	51	29	6	0.206896552	exonic	Ccdc51	nonsynonymous SNV	Ccdc51:NM_025689:exon3:c.T389C:p.V130A	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.844849278	1	0.8902671	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	109100567	12A2p6	cell line	sgMsh2	109100567	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	54	2	0	0	exonic	Plxnb1	nonsynonymous SNV	Plxnb1:NM_172775:exon3:c.C490T:p.P164S	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9895338	GCC	nonsynonymous	NA	NA	NA	NA
M1	chr9	110086987	12A2p6	cell line	sgMsh2	110086987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	113	129	32	0.248062016	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon10:c.A2142G:p.Q714Q,Dhx30:NM_133347:exon13:c.A2124G:p.Q708Q,Dhx30:NM_001252682:exon14:c.A2055G:p.Q685Q"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	GTT	synonymous	NA	NA	NA	NA
M1	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	159	307	79	0.25732899	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.967488689	1	0.9997511	GCT	nonsynonymous	NA	NA	NA	NA
M1	chr9	110387491	12A2p6	cell line	sgMsh2	110387491	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	34	31	0	0	exonic	Ptpn23	frameshift deletion	Ptpn23:NM_001081043:exon20:c.3296delC:p.P1099Lfs*103	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1	chr9	110388416	12A2p6	cell line	sgMsh2	110388416	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	60	145	35	0.24137931	exonic	Ptpn23	nonsynonymous SNV	Ptpn23:NM_001081043:exon20:c.T2371G:p.S791A	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.781258472	1	0.7360202	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	126	5	1	0.2	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997121	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M1	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	74	4	2	0.5	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9961278	ATA	synonymous	NA	NA	NA	NA
M1	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	60	32	6	0.1875	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.985657491	1	0.009965208	GGA	nonsynonymous	G	5	GGGGG	NA
M1	chr9	110727971	12A2p6	cell line	sgMsh2	110727971	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	124	0	0	NA	exonic	Pth1r	stopgain	"Pth1r:NM_001083936:exon4:c.C351A:p.C117X,Pth1r:NM_001083935:exon5:c.C351A:p.C117X,Pth1r:NM_011199:exon6:c.C351A:p.C117X"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996818	AGC	nonsynonymous	NA	NA	NA	NA
M1	chr9	113903852	12A2p6	cell line	sgMsh2	113903852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	122	56	7	0.125	exonic	Clasp2	nonsynonymous SNV	"Clasp2:NM_029633:exon27:c.T2755C:p.Y919H,Clasp2:NM_001286600:exon29:c.T2809C:p.Y937H"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885729082	1	0.979974	TTA	nonsynonymous	NA	NA	NA	NA
M1	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	90	119	30	0.25210084	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	ATC	nonsynonymous	A	5	AAAAA	NA
M1	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	140	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998571	GAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	59	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9918319	GTG	nonsynonymous	NA	NA	NA	NA
M1	chr9	119493064	12A2p6	cell line	sgMsh2	119493064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	53	0	0	NA	exonic	Scn5a	synonymous SNV	"Scn5a:NM_001253860:exon23:c.A4305G:p.R1435R,Scn5a:NM_021544:exon24:c.A4305G:p.R1435R"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9890025	CTC	synonymous	NA	NA	NA	NA
M1	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	90	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9982577	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M1	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	125	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996973	GAT	synonymous	NA	NA	NA	NA
M1	chr9	123011604	12A2p6	cell line	sgMsh2	123011604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	104	39	4	0.102564103	exonic	Kif15	nonsynonymous SNV	Kif15:NM_010620:exon30:c.A3662G:p.Q1221R	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991346	CAG	nonsynonymous	NA	NA	NA	NA
M1	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	113	76	19	0.25	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994483	CAC	synonymous	NA	NA	NA	NA
M1	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	87	28	0.32183908	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999176	ATA	nonsynonymous	NA	NA	NA	NA
M1	chr9	124125198	12A2p6	cell line	sgMsh2	124125198	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	234	0	0	NA	exonic	Ccr5	nonsynonymous SNV	Ccr5:NM_009917:exon2:c.G837T:p.Q279H	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999987	AGG	nonsynonymous	NA	NA	NA	NA
M1	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	15	2	1	0.5	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M1	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	26	1	0	0	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	59	19	9	0.473684211	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M1	chrX	7728748	12A2p6	cell line	sgMsh2	7728748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	42	106	48	0.452830189	exonic	Praf2	synonymous SNV	Praf2:NM_138602:exon1:c.T165C:p.S55S	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	synonymous	NA	NA	NA	NA
M1	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.591	42	17	10	0.588235294	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M1	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	126	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M1	chrX	13290320	12A2p6	cell line	sgMsh2	13290320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	82	537	285	0.530726257	exonic	Ddx3x	nonsynonymous SNV	Ddx3x:NM_010028:exon13:c.A1457G:p.Q486R	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M1	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	115	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1	chrX	18264114	12A2p6	cell line	sgMsh2	18264114	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.421	94	29	4	0.137931034	exonic	Kdm6a	frameshift deletion	"Kdm6a:NM_001310444:exon22:c.3238delA:p.T1081Pfs*21,Kdm6a:NM_009483:exon22:c.3238delA:p.T1081Pfs*22"	XqA1.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	147	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M1	chrX	43592724	12A2p6	cell line	sgMsh2	43592724	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.447	37	0	0	NA	exonic	Tex13c1	frameshift insertion	Tex13c1:NM_001195271:exon1:c.1566dupA:p.C524Mfs*1	XqA4	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	frameshift	NA	NA	NA	1
M1	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	43	5	3	0.6	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M1	chrX	57248988	12A2p6	cell line	sgMsh2	57248988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	88	0	0	NA	exonic	Arhgef6	nonsynonymous SNV	"Arhgef6:NM_001358573:exon11:c.T905C:p.V302A,Arhgef6:NM_152801:exon12:c.T1436C:p.V479A"	XqA6	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	51	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1	chrX	64177640	12A2p6	cell line	sgMsh2	64177640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.632	17	0	0	NA	exonic	3830417A13Rik	nonsynonymous SNV	3830417A13Rik:NM_027512:exon4:c.C200T:p.P67L	XqA7.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCC	nonsynonymous	NA	NA	NA	NA
M1	chrX	66654698	12A2p6	cell line	sgMsh2	66654698	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.414	56	0	0	NA	exonic	Slitrk2	frameshift insertion	"Slitrk2:NM_198863:exon2:c.795dupA:p.S267Kfs*4,Slitrk2:NM_001161431:exon3:c.795dupA:p.S267Kfs*4"	XqA7.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	frameshift	A	5	AAAAA	1
M1	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	83	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M1	chrX	71307828	12A2p6	cell line	sgMsh2	71307828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	54	21	9	0.428571429	exonic	Mtm1	synonymous SNV	"Mtm1:NM_001164192:exon13:c.A1503G:p.E501E,Mtm1:NM_001164190:exon14:c.A1596G:p.E532E,Mtm1:NM_001164191:exon14:c.A1596G:p.E532E,Mtm1:NM_019926:exon14:c.A1596G:p.E532E,Mtm1:NM_001358113:exon15:c.A1188G:p.E396E"	XqA7.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M1	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	102	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	60	90	50	0.555555556	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M1	chrX	74369835	12A2p6	cell line	sgMsh2	74369835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	46	22	6	0.272727273	exonic	Slc10a3	synonymous SNV	"Slc10a3:NM_001256104:exon2:c.A1038G:p.L346L,Slc10a3:NM_145406:exon3:c.A1038G:p.L346L"	XqA7.3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M1	chrX	83722027	12A2p6	cell line	sgMsh2	83722027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	42	0	0	NA	exonic	Dmd	nonsynonymous SNV	Dmd:NM_007868:exon16:c.C1978T:p.L660F	XqC1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ACT	nonsynonymous	A	5	AAAAA	NA
M1	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.566	77	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M1	chrX	89932572	12A2p6	cell line	sgMsh2	89932572	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	92	0	0	NA	exonic	4930415L06Rik	nonsynonymous SNV	4930415L06Rik:NM_001033880:exon2:c.G18T:p.E6D	XqC1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M1	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.594	69	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M1	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.549	99	13	7	0.538461538	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M1	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	745	374	0.502013423	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M1	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.529	15	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	46	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M1	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.6	67	94	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	55	30	15	0.5	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M1	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	101	10	2	0.2	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M1	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.534	65	87	40	0.459770115	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M1	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	79	19	12	0.631578947	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M1	chrX	112094194	12A2p6	cell line	sgMsh2	112094194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	59	0	0	NA	exonic	Tex16	synonymous SNV	Tex16:NM_031382:exon1:c.T666C:p.S222S	XqE1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M1	chrX	112495365	12A2p6	cell line	sgMsh2	112495365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	132	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon1:c.A19G:p.M7V,2010106E10Rik:NM_026333:exon1:c.A19G:p.M7V"	XqE1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M1	chrX	117015017	12A2p6	cell line	sgMsh2	117015017	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	23	0	0	NA	exonic	H2ab1	synonymous SNV	H2ab1:NM_001102665:exon1:c.G261T:p.L87L	XqE1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
M1	chrX	120726503	12A2p6	cell line	sgMsh2	120726503	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	35	0	0	NA	exonic	Pcdh11x	synonymous SNV	"Pcdh11x:NM_001271810:exon5:c.C3120T:p.S1040S,Pcdh11x:NM_001271809:exon6:c.C3150T:p.S1050S"	XqE2	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
M1	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	43	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M1	chrX	127060780	12A2p6	cell line	sgMsh2	127060780	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	68	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.C587A:p.T196K	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M1	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.613	32	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M1	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	34	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M1	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	34	13	13	1	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M1	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	38	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M1	chrX	138209037	12A2p6	cell line	sgMsh2	138209037	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.573	59	0	0	NA	exonic	Tex13a	nonsynonymous SNV	Tex13a:NM_026469:exon1:c.A391C:p.M131L	XqF1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M1	chrX	140074858	12A2p6	cell line	sgMsh2	140074858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	33	0	0	NA	exonic	Dnaaf6b	synonymous SNV	Dnaaf6b:NM_177921:exon3:c.T222G:p.P74P	XqF1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M1	chrX	140427939	12A2p6	cell line	sgMsh2	140427939	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	64	0	0	NA	exonic	Frmpd3	synonymous SNV	Frmpd3:NM_001320946:exon14:c.C1788A:p.S596S	XqF1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M1	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.575	42	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M1	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.444	7	16	3	0.1875	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M1	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	57	5	3	0.6	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M1	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	156	118	55	0.466101695	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M1	chrX	160903348	12A2p6	cell line	sgMsh2	160903348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.656	70	0	0	NA	exonic	Gja6	nonsynonymous SNV	Gja6:NM_001001496:exon2:c.T587C:p.V196A	XqF4	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M1	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	45	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1	chrX	169182136	12A2p6	cell line	sgMsh2	169182136	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.461	12	0	0	NA	exonic	Amelx	frameshift deletion	"Amelx:NM_001081978:exon5:c.227delC:p.P76Rfs*25,Amelx:NM_001290371:exon5:c.155delC:p.P52Rfs*25,Amelx:NM_009666:exon5:c.227delC:p.P76Rfs*25"	XqF5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1	chrX	169987651	12A2p6	cell line	sgMsh2	169987651	A	G	SNV	Mutect2;Vardict	2	0.068	115	5	0	0	exonic	Mid1	nonsynonymous SNV	"Mid1:NM_001290504:exon9:c.A1540G:p.K514E,Mid1:NM_001290505:exon9:c.A1540G:p.K514E,Mid1:NM_001290506:exon9:c.A1426G:p.K476E,Mid1:NM_001290512:exon9:c.A922G:p.K308E,Mid1:NM_010797:exon9:c.A1579G:p.K527E"	XqF5	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAA	nonsynonymous	NA	NA	NA	NA
M1	chrY	726493	12A2p6	cell line	sgMsh2	726493	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.483	120	0	0	NA	exonic	Zfy1	frameshift deletion	Zfy1:NM_009570:exon9:c.1271delA:p.N424Tfs*23	YqA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	79	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.087980376	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	40	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9798591	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	43	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9827736	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	214	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.733172113	2	0.9864122	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	294	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	3.13E-08	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M1_p20	chr1	17004453	12A2p6	cell line	sgMsh2	17004453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	24	0	0	NA	exonic	Jph1	nonsynonymous SNV	Jph1:NM_020604:exon4:c.C1340T:p.P447L	1qA3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	2	1	1	0.9541331	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	18251232	12A2p6	cell line	sgMsh2	18251232	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	305	0	0	NA	exonic	Defb41	nonsynonymous SNV	Defb41:NM_183124:exon2:c.T157C:p.C53R	1qA3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	1.69E-08	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	19231030	12A2p6	cell line	sgMsh2	19231030	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	82	0	0	NA	exonic	Tfap2b	nonsynonymous SNV	"Tfap2b:NM_001025305:exon6:c.G904T:p.A302S,Tfap2b:NM_001286340:exon6:c.G958T:p.A320S,Tfap2b:NM_009334:exon6:c.G958T:p.A320S"	1qA3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9977945	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	81	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9976745	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	95	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.761191429	2	0.5278432	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	161	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	24296786	12A2p6	cell line	sgMsh2	24296786	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	270	0	0	NA	exonic	Col19a1	stopgain	Col19a1:NM_007733:exon41:c.G2578T:p.G860X	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	145	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999221	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	26687303	12A2p6	cell line	sgMsh2	26687303	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	597	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.A124T:p.I42L	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.10740738	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	28777857	12A2p6	cell line	sgMsh2	28777857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	170	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A1093T:p.N365Y	1qA5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.9973032	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	31223388	12A2p6	cell line	sgMsh2	31223388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	416	0	0	NA	exonic	Dnaaf6	synonymous SNV	Dnaaf6:NM_029062:exon1:c.A450G:p.K150K	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	1.04E-09	AAA	synonymous	NA	NA	NA	NA
M1_p20	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	58	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9921576	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	55	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	2	1	1	0.990816	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	131	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998361	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	34194112	12A2p6	cell line	sgMsh2	34194112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	119	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_134448:exon38:c.T10194C:p.H3398H,Dst:NM_001276764:exon41:c.T10728C:p.H3576H"	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996901	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	312	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	1.20E-08	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	36837966	12A2p6	cell line	sgMsh2	36837966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	165	0	0	NA	exonic	Tmem131	nonsynonymous SNV	Tmem131:NM_018872:exon8:c.A791C:p.K264T	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999722	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	117	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996554	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	37429918	12A2p6	cell line	sgMsh2	37429918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	90	0	0	NA	exonic	Coa5	nonsynonymous SNV	Coa5:NM_198006:exon1:c.T50C:p.V17A	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9985566	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	27	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	2	1	1	0.960623	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	39990170	12A2p6	cell line	sgMsh2	39990170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	62	0	0	NA	exonic	Map4k4	synonymous SNV	"Map4k4:NM_001252200:exon12:c.G1104A:p.E368E,Map4k4:NM_001252201:exon12:c.G1104A:p.E368E,Map4k4:NM_001252202:exon12:c.G1104A:p.E368E,Map4k4:NM_008696:exon12:c.G1104A:p.E368E"	1qB	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.695813024	2	0.6674575	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	210	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999975	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	317	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	9.43E-09	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	46123770	12A2p6	cell line	sgMsh2	46123770	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	539	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon11:c.A1143C:p.Q381H	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	37	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9764633	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	223	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	374	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	1.93E-08	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	389	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.943316986	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	85	0	0	NA	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9981186	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	194	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999942	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	56	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	2	1	1	0.9912867	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M1_p20	chr1	58247248	12A2p6	cell line	sgMsh2	58247248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	374	0	0	NA	exonic	Aox4	nonsynonymous SNV	Aox4:NM_023631:exon19:c.A2038G:p.T680A	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	1.41E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	133	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998526	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	102	0	0	NA	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.733172113	2	0.7541249	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	59199042	12A2p6	cell line	sgMsh2	59199042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	143	0	0	NA	exonic	Als2	nonsynonymous SNV	"Als2:NM_001159948:exon10:c.A2130G:p.I710M,Als2:NM_028717:exon10:c.A2130G:p.I710M,Als2:NM_146109:exon10:c.A2130G:p.I710M"	1qC1.3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999133	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	117	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996554	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	242	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	138	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.779870973	2	0.5431768	CTG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr1	66673989	12A2p6	cell line	sgMsh2	66673989	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	59	0	0	NA	exonic	Unc80	synonymous SNV	"Unc80:NM_001368825:exon54:c.T8070G:p.A2690A,Unc80:NM_001368824:exon55:c.T8310G:p.A2770A,Unc80:NM_175510:exon55:c.T8265G:p.A2755A"	1qC3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9925601	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	191	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999932	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	128	0	0	NA	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998078	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74394906	12A2p6	cell line	sgMsh2	74394906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	78	0	0	NA	exonic	Ctdsp1	nonsynonymous SNV	Ctdsp1:NM_153088:exon6:c.T541C:p.C181R	1qC3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.996908	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	255	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.999991	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	115	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996168	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	236	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.943316986	1	0.9977494	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	74748821	12A2p6	cell line	sgMsh2	74748821	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	14	0	0	NA	exonic	Prkag3	synonymous SNV	Prkag3:NM_153744:exon1:c.T30G:p.P10P	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9243089	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	74919233	12A2p6	cell line	sgMsh2	74919233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	128	0	0	NA	exonic	Cfap65	nonsynonymous SNV	Cfap65:NM_001039495:exon15:c.T2714C:p.V905A	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998078	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	102	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992362	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	68	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9953733	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	81269247	12A2p6	cell line	sgMsh2	81269247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	107	0	0	NA	exonic	Nyap2	nonsynonymous SNV	"Nyap2:NM_001356397:exon5:c.A1813G:p.S605G,Nyap2:NM_001356400:exon5:c.A1813G:p.S605G,Nyap2:NM_001356398:exon6:c.A1909G:p.S637G,Nyap2:NM_001356399:exon6:c.A1813G:p.S605G"	1qC5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.868598809	1	0.9591297	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	143	0	0	NA	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999133	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	124	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-84929848	4	2	2	0.9	4.202897461	NA	1	0.719162454	2	0.09347977	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Vardict	2	0.127	57	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	1	0.593075531	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	76	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-85027661-85662926	7.48560055	5.48560055	2	0.9	4.202897461	NA	2	1	1	0.9969696	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	222	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.798550518	2	0.5215318	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	88212803	12A2p6	cell line	sgMsh2	88212803	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	574	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.A802G:p.R268G	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.200805101	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	409	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.350241455	3	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	90144865	12A2p6	cell line	sgMsh2	90144865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	221	0	0	NA	exonic	Iqca	nonsynonymous SNV	"Iqca:NM_001368722:exon2:c.T292C:p.F98L,Iqca:NM_029122:exon2:c.T292C:p.F98L"	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999986	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	91368438	12A2p6	cell line	sgMsh2	91368438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	220	0	0	NA	exonic	Erfe	nonsynonymous SNV	Erfe:NM_173395:exon2:c.A242G:p.K81R	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	92858333	12A2p6	cell line	sgMsh2	92858333	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.5	10	0	0	NA	exonic	Gpc1	nonsynonymous SNV	Gpc1:NM_016696:exon9:c.T1443G:p.S481R	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.09175058	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	130	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998272	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	269	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	116	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9836759	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	178	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999865	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	93689190	12A2p6	cell line	sgMsh2	93689190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	118	0	0	NA	exonic	Bok	nonsynonymous SNV	Bok:NM_016778:exon3:c.A257G:p.Y86C	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	128	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.779870973	2	0.5082466	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	59	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr1	105808215	12A2p6	cell line	sgMsh2	105808215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	257	0	0	NA	exonic	Tnfrsf11a	nonsynonymous SNV	Tnfrsf11a:NM_009399:exon2:c.T151C:p.C51R	1qE2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.251	321	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M1_p20	chr1	116412208	12A2p6	cell line	sgMsh2	116412208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	267	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon14:c.A2196G:p.R732R,Cntnap5a:NM_001371013:exon14:c.A2199G:p.R733R"	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9992093	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr1	116442254	12A2p6	cell line	sgMsh2	116442254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	261	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon17:c.A2600G:p.Y867C,Cntnap5a:NM_001371013:exon17:c.A2603G:p.Y868C"	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	79	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9974147	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	251	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999997	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	159	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.222	233	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	146	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999261	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	128272844	12A2p6	cell line	sgMsh2	128272844	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	117	0	0	NA	exonic	Ubxn4	frameshift deletion	"Ubxn4:NM_001356529:exon11:c.1074delT:p.S360Hfs*1,Ubxn4:NM_026390:exon11:c.1071delT:p.S359Hfs*1"	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	111	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995262	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	119	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9330415	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	479	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	286	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	4.47E-08	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	69	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9956115	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	58	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9847584	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M1_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	83	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9979083	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	188	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9999463	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	53	0	0	NA	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9897976	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	92	0	0	NA	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987019	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	133645798	12A2p6	cell line	sgMsh2	133645798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	285	0	0	NA	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon4:c.A103G:p.T35A,Zc3h11a:NM_144530:exon4:c.A103G:p.T35A,Zc3h11a:NM_001276767:exon5:c.A103G:p.T35A"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	4.71E-08	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	133688887	12A2p6	cell line	sgMsh2	133688887	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	39	0	0	NA	exonic	Lax1	nonsynonymous SNV	"Lax1:NM_001159649:exon2:c.C20T:p.P7L,Lax1:NM_172842:exon2:c.C20T:p.P7L"	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9787842	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.286	211	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999977	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.286	211	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999977	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	221	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	489	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	280	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TTT	synonymous	NA	NA	NA	NA
M1_p20	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	68	0	0	NA	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9953733	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	150664892	12A2p6	cell line	sgMsh2	150664892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	391	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon56:c.A8665G:p.T2889A	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.17E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	105	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9946342	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	261	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	152554407	12A2p6	cell line	sgMsh2	152554407	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	89	0	0	NA	exonic	Rgl1	synonymous SNV	"Rgl1:NM_001346119:exon6:c.C618T:p.N206N,Rgl1:NM_016846:exon6:c.C624T:p.N208N,Rgl1:NM_001346117:exon7:c.C729T:p.N243N,Rgl1:NM_001346118:exon7:c.C729T:p.N243N"	1qG2	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9984781	TGT	synonymous	NA	NA	NA	NA
M1_p20	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	252	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	49	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9874139	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	513	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	154469095	12A2p6	cell line	sgMsh2	154469095	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	45	0	0	NA	exonic	Cacna1e	synonymous SNV	Cacna1e:NM_009782:exon22:c.G3282T:p.T1094T	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9844822	CCG	synonymous	NA	NA	NA	NA
M1_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	209	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999974	AAG	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr1	156017551	12A2p6	cell line	sgMsh2	156017551	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	214	0	0	NA	exonic	Tor1aip1	nonsynonymous SNV	"Tor1aip1:NM_001160018:exon8:c.G849T:p.E283D,Tor1aip1:NM_001160019:exon8:c.G294T:p.E98D"	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.9993197	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	156065358	12A2p6	cell line	sgMsh2	156065358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	52	0	0	NA	exonic	Tor1aip2	nonsynonymous SNV	"Tor1aip2:NM_001358626:exon5:c.T1409C:p.M470T,Tor1aip2:NM_001358627:exon6:c.T1409C:p.M470T,Tor1aip2:NM_172843:exon7:c.T1409C:p.M470T"	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9892472	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	156622630	12A2p6	cell line	sgMsh2	156622630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	194	0	0	NA	exonic	Abl2	synonymous SNV	"Abl2:NM_001136104:exon3:c.T366C:p.G122G,Abl2:NM_009595:exon3:c.T366C:p.G122G"	1qG3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999942	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr1	158266665	12A2p6	cell line	sgMsh2	158266665	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.16	40	0	0	NA	exonic	Brinp2	stopgain	Brinp2:NM_207583:exon4:c.G466T:p.E156X	1qH1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.747181771	1	7.71E-05	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	379	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.31E-09	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	161241748	12A2p6	cell line	sgMsh2	161241748	T	-	Deletion	Mutect2;Vardict	2	0.13	117	0	0	NA	exonic	Prdx6	frameshift deletion	"Prdx6:NM_007453:exon5:c.648delA:p.K216Nfs*45,Prdx6:NM_001303408:exon6:c.576delA:p.K192Nfs*45"	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.607085189	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	392	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.16E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	279	0	0	NA	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CCA	synonymous	NA	NA	NA	NA
M1_p20	chr1	164438425	12A2p6	cell line	sgMsh2	164438425	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	115	0	0	NA	exonic	Atp1b1	synonymous SNV	Atp1b1:NM_009721:exon6:c.C766T:p.L256L	1qH2.2	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.980676074	1	0.9992459	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	196	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.9386471	1	0.9997968	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	166099971	12A2p6	cell line	sgMsh2	166099971	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	149	0	0	NA	exonic	Dusp27	frameshift deletion	"Dusp27:NM_001033344:exon6:c.2071delC:p.L691Cfs*47,Dusp27:NM_001160049:exon6:c.2071delC:p.L691Cfs*47"	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	138	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999887	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	91	0	0	NA	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9986312	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	75	0	0	NA	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.9758608	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	125	0	0	NA	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997746	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	215	0	0	NA	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.845249378	1	0.9540398	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	224	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	172279394	12A2p6	cell line	sgMsh2	172279394	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	165	0	0	NA	exonic	Atp1a2	frameshift deletion	Atp1a2:NM_178405:exon17:c.2358delC:p.F787Sfs*15	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.976006188	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	80	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	75	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9968049	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	172957075	12A2p6	cell line	sgMsh2	172957075	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	314	0	0	NA	exonic	Olfr16	synonymous SNV	Olfr16:NM_008763:exon1:c.C279A:p.S93S	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.09E-08	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	520	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	427	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr1	173225553	12A2p6	cell line	sgMsh2	173225553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	123	0	0	NA	exonic	Fcer1a	synonymous SNV	Fcer1a:NM_010184:exon3:c.T75C:p.T25T	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.728502227	2	0.8686558	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2	2	0.08	286	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.373590885	3	0.9999974	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	173473804	12A2p6	cell line	sgMsh2	173473804	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	148	0	0	NA	exonic	Ifi206	synonymous SNV	"Ifi206:NM_001372436:exon6:c.T2307C:p.N769N,Ifi206:NM_001372437:exon6:c.T2307C:p.N769N"	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9998038	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	351	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9999956	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	242	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.9243951	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	174028243	12A2p6	cell line	sgMsh2	174028243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	274	0	0	NA	exonic	Ifi205	nonsynonymous SNV	Ifi205:NM_172648:exon2:c.A220G:p.T74A	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	174231386	12A2p6	cell line	sgMsh2	174231386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	138	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon42:c.A5886G:p.L1962L	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999887	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	220	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999985	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	176742557	12A2p6	cell line	sgMsh2	176742557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	118	0	0	NA	exonic	Cep170	nonsynonymous SNV	"Cep170:NM_001368872:exon13:c.A3529G:p.T1177A,Cep170:NM_001368873:exon14:c.A3679G:p.T1227A,Cep170:NM_001099637:exon15:c.A3973G:p.T1325A"	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr1	179592691	12A2p6	cell line	sgMsh2	179592691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	88	0	0	NA	exonic	Cnst	nonsynonymous SNV	Cnst:NM_146105:exon3:c.C386T:p.A129V	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983952	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	63	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.8853354	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	138	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999887	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	48	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	123	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	56	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9912867	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr1	185278355	12A2p6	cell line	sgMsh2	185278355	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	102	0	0	NA	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon31:c.T3541A:p.F1181I	1qH5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992362	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr1	185363208	12A2p6	cell line	sgMsh2	185363208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	24	0	0	NA	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_001357474:exon1:c.T11A:p.L4Q,Eprs:NM_029735:exon1:c.T11A:p.L4Q"	1qH5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9541331	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	186968871	12A2p6	cell line	sgMsh2	186968871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	386	0	0	NA	exonic	D1Pas1	synonymous SNV	D1Pas1:NM_033077:exon1:c.A996G:p.R332R	1qH5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.22E-09	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr1	186969469	12A2p6	cell line	sgMsh2	186969469	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	535	0	0	NA	exonic	D1Pas1	nonsynonymous SNV	D1Pas1:NM_033077:exon1:c.G1594T:p.G532C	1qH5	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	182	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999891	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	166	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-85663222-195166209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999744	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	102	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992362	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	85	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.882608467	1	0.962017	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	4354926	12A2p6	cell line	sgMsh2	4354926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	151	0	0	NA	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.T2050C:p.S684P	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	4407868	12A2p6	cell line	sgMsh2	4407868	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.198	317	0	0	NA	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon11:c.A1140C:p.R380S,Rmnd1:NM_001358796:exon12:c.A1140C:p.R380S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9999877	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	204	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999966	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	276	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.868598809	1	0.995314	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	312	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	10719563	12A2p6	cell line	sgMsh2	10719563	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	196	0	0	NA	exonic	Grm1	nonsynonymous SNV	"Grm1:NM_001114333:exon8:c.A2320T:p.T774S,Grm1:NM_016976:exon8:c.A2320T:p.T774S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999948	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	293	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	3.11E-08	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	241	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	189	0	0	NA	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999925	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr10	13125028	12A2p6	cell line	sgMsh2	13125028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	151	0	0	NA	exonic	Plagl1	synonymous SNV	"Plagl1:NM_009538:exon5:c.C12T:p.F4F,Plagl1:NM_001364644:exon6:c.C12T:p.F4F,Plagl1:NM_001364643:exon7:c.C12T:p.F4F,Plagl1:NM_001364645:exon7:c.C12T:p.F4F"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	TCC	synonymous	NA	NA	NA	NA
M1_p20	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	189	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9999486	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	14128134	12A2p6	cell line	sgMsh2	14128134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	80	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A475G:p.N159D,Hivep2:NM_001358782:exon5:c.A475G:p.N159D,Hivep2:NM_001358783:exon8:c.A475G:p.N159D"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	14130518	12A2p6	cell line	sgMsh2	14130518	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	77	0	0	NA	exonic	Hivep2	synonymous SNV	"Hivep2:NM_010437:exon4:c.C2859T:p.T953T,Hivep2:NM_001358782:exon5:c.C2859T:p.T953T,Hivep2:NM_001358783:exon8:c.C2859T:p.T953T"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9971258	CCG	synonymous	NA	NA	NA	NA
M1_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	94	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.8858874	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	17723946	12A2p6	cell line	sgMsh2	17723946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	61	0	0	NA	exonic	Cited2	nonsynonymous SNV	Cited2:NM_010828:exon2:c.A1G:p.M1V	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9933046	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	17723974	12A2p6	cell line	sgMsh2	17723974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	64	0	0	NA	exonic	Cited2	nonsynonymous SNV	Cited2:NM_010828:exon2:c.A29G:p.H10R	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9942849	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	17915097	12A2p6	cell line	sgMsh2	17915097	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	114	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.C1210T:p.R404W	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	149	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.999937	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	225	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	57	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9917335	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	103	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9992757	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	20959922	12A2p6	cell line	sgMsh2	20959922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	104	0	0	NA	exonic	Ahi1	synonymous SNV	"Ahi1:NM_001358561:exon2:c.A153G:p.E51E,Ahi1:NM_026203:exon2:c.A153G:p.E51E"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993131	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	93	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987689	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	23993392	12A2p6	cell line	sgMsh2	23993392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	572	0	0	NA	exonic	Taar7a	synonymous SNV	Taar7a:NM_001010829:exon1:c.T90C:p.Y30Y	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr10	24244309	12A2p6	cell line	sgMsh2	24244309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	339	0	0	NA	exonic	Moxd1	nonsynonymous SNV	Moxd1:NM_021509:exon2:c.A334G:p.M112V	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	3.62E-09	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	24820607	12A2p6	cell line	sgMsh2	24820607	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	198	0	0	NA	exonic	Enpp3	synonymous SNV	Enpp3:NM_134005:exon5:c.C429A:p.A143A	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999953	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	142	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999086	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	109	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.845249378	1	0.9172683	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	102	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.859259037	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr10	34297972	12A2p6	cell line	sgMsh2	34297972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	28	0	0	NA	exonic	Tspyl4	synonymous SNV	Tspyl4:NM_030203:exon1:c.T459C:p.S153S	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9625833	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	132	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998446	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr10	40289423	12A2p6	cell line	sgMsh2	40289423	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	221	0	0	NA	exonic	Amd1;Amd2	nonsynonymous SNV	"Amd2:NM_007444:exon8:c.G911A:p.G304D,Amd1:NM_009665:exon8:c.G911A:p.G304D"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999986	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	41070568	12A2p6	cell line	sgMsh2	41070568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	133	0	0	NA	exonic	Gpr6	synonymous SNV	Gpr6:NM_199058:exon2:c.T1017C:p.R339R	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998526	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	41256492	12A2p6	cell line	sgMsh2	41256492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	241	0	0	NA	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon12:c.C1317A:p.S439R	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999995	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	207	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999971	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	49	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9874139	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	63	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9939751	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	120	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.990913	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	44441236	12A2p6	cell line	sgMsh2	44441236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	215	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.A1590G:p.K530K	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999981	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr10	44441640	12A2p6	cell line	sgMsh2	44441640	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	109	0	0	NA	exonic	Prdm1	frameshift deletion	Prdm1:NM_007548:exon5:c.1186delC:p.H396Tfs*28	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1_p20	chr10	50707714	12A2p6	cell line	sgMsh2	50707714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	317	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon17:c.T2758C:p.Y920H	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	9.43E-09	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	50748859	12A2p6	cell line	sgMsh2	50748859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	184	0	0	NA	exonic	Ascc3	synonymous SNV	Ascc3:NM_198007:exon31:c.T4842G:p.A1614A	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999902	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	250	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	131	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9995728	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	52319904	12A2p6	cell line	sgMsh2	52319904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	92	0	0	NA	exonic	Dcbld1	nonsynonymous SNV	"Dcbld1:NM_001347444:exon10:c.T1207C:p.S403P,Dcbld1:NM_025705:exon11:c.T1420C:p.S474P"	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987019	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	298	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	2.41E-08	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	55	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.990816	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	61424498	12A2p6	cell line	sgMsh2	61424498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	89	0	0	NA	exonic	Nodal	synonymous SNV	Nodal:NM_013611:exon3:c.A927G:p.R309R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9984781	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	249	0	0	NA	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	62270049	12A2p6	cell line	sgMsh2	62270049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	43	0	0	NA	exonic	Hk1	nonsynonymous SNV	"Hk1:NM_001146100:exon18:c.A2617G:p.R873G,Hk1:NM_010438:exon22:c.A2698G:p.R900G"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9363569	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	64	0	0	NA	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.943316986	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	416	0	0	NA	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.9386471	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	129	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998178	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	67219693	12A2p6	cell line	sgMsh2	67219693	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	349	0	0	NA	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1209C:p.S403S,Jmjd1c:NM_207221:exon8:c.T1752C:p.S584S"	10qB5.1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	2.54E-09	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	86	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.681803366	2	0.8824101	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	265	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.803220404	2	0.5166643	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	70167105	12A2p6	cell line	sgMsh2	70167105	-	GTGT	Insertion	Mutect2;Vardict	2	0.244	37	0	0	NA	exonic	Ccdc6	frameshift insertion	Ccdc6:NM_001111121:exon4:c.665_666insGTGT:p.I223Cfs*17	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	AGG	frameshift	GT	30	GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	4
M1_p20	chr10	75177937	12A2p6	cell line	sgMsh2	75177937	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	96	0	0	NA	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon19:c.A3233C:p.E1078A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.99895	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	75640020	12A2p6	cell line	sgMsh2	75640020	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	149	0	0	NA	exonic	Susd2	nonsynonymous SNV	"Susd2:NM_001162913:exon6:c.A784G:p.T262A,Susd2:NM_027890:exon8:c.A1144G:p.T382A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.9998774	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	137	0	0	NA	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998808	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	54	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	170	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9998113	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	76533574	12A2p6	cell line	sgMsh2	76533574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	110	0	0	NA	exonic	Lss	nonsynonymous SNV	Lss:NM_146006:exon3:c.T245C:p.V82A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	76721818	12A2p6	cell line	sgMsh2	76721818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	73	0	0	NA	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon4:c.C583T:p.L195L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.877938581	1	0.9488408	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	88	0	0	NA	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.663123822	2	0.9311384	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	62	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.793880632	1	0.7607494	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr10	77589712	12A2p6	cell line	sgMsh2	77589712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	134	0	0	NA	exonic	Pttg1ip	nonsynonymous SNV	Pttg1ip:NM_145925:exon3:c.T238G:p.L80V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998602	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	334	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	4.42E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	204	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999953	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999299	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	79478960	12A2p6	cell line	sgMsh2	79478960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	191	0	0	NA	exonic	Vmn2r83	nonsynonymous SNV	Vmn2r83:NM_001104537:exon3:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999932	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	79825773	12A2p6	cell line	sgMsh2	79825773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	exonic	Misp	nonsynonymous SNV	Misp:NM_030218:exon2:c.C23T:p.P8L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996366	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	79865469	12A2p6	cell line	sgMsh2	79865469	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.104	59	0	0	NA	exonic	Plppr3	nonsynonymous SNV	Plppr3:NM_181681:exon7:c.T1538C:p.V513A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.485668151	2	0.928342	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	49	0	0	NA	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.803220404	1	0.8058035	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	232	0	0	NA	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9984004	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	80239939	12A2p6	cell line	sgMsh2	80239939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	163	0	0	NA	exonic	Pwwp3a	nonsynonymous SNV	Pwwp3a:NM_023431:exon10:c.T1358C:p.F453S	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9949228	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	83	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9979083	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M1_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9945788	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	28	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9625833	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.208	33	0	0	NA	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.9617505	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	23	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.821899948	1	0.8496677	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	22	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9492516	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	206	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999969	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	83	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9979083	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	93	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987689	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80788516	12A2p6	cell line	sgMsh2	80788516	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	exonic	Dot1l	synonymous SNV	Dot1l:NM_199322:exon24:c.T2817G:p.G939G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.969525	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr10	80835604	12A2p6	cell line	sgMsh2	80835604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	24	0	0	NA	exonic	Lingo3	nonsynonymous SNV	"Lingo3:NM_001013758:exon2:c.T491C:p.I164T,Lingo3:NM_001359746:exon2:c.T491C:p.I164T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9541331	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	86	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9982157	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	81178079	12A2p6	cell line	sgMsh2	81178079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	128	0	0	NA	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon3:c.C245A:p.S82Y	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998078	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	81181120	12A2p6	cell line	sgMsh2	81181120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	133	0	0	NA	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon11:c.A2030G:p.D677G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998526	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	63	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.742511885	1	0.5400256	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	268	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	155	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr10	81643023	12A2p6	cell line	sgMsh2	81643023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	246	0	0	NA	exonic	Ankrd24	synonymous SNV	"Ankrd24:NM_001374016:exon17:c.T1905C:p.D635D,Ankrd24:NM_027480:exon17:c.T1815C:p.D605D"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	102	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992362	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	96	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.99895	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	189	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999925	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	93497590	12A2p6	cell line	sgMsh2	93497590	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	175	0	0	NA	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon11:c.T1019C:p.V340A	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.8858318	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	184	0	0	NA	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999902	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	103215382	12A2p6	cell line	sgMsh2	103215382	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	115	0	0	NA	exonic	Lrriq1	frameshift deletion	"Lrriq1:NM_001163559:exon8:c.1508delA:p.N503Tfs*16,Lrriq1:NM_001361058:exon8:c.1508delA:p.N503Tfs*16,Lrriq1:NM_029134:exon8:c.1508delA:p.N503Tfs*16"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr10	112272214	12A2p6	cell line	sgMsh2	112272214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	83	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	"Kcnc2:NM_001025581:exon2:c.T509C:p.L170P,Kcnc2:NM_001359752:exon2:c.T509C:p.L170P,Kcnc2:NM_001359753:exon2:c.T509C:p.L170P,Kcnc2:NM_001379643:exon2:c.T509C:p.L170P,Kcnc2:NM_001379644:exon2:c.T509C:p.L170P"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.616424961	2	0.9716194	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	132	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998446	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	147	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999299	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	118205737	12A2p6	cell line	sgMsh2	118205737	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.196	261	0	0	NA	exonic	Il22	synonymous SNV	Il22:NM_016971:exon3:c.T255C:p.A85A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.915297669	1	0.9998607	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr10	120146474	12A2p6	cell line	sgMsh2	120146474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	229	0	0	NA	exonic	Irak3	nonsynonymous SNV	"Irak3:NM_001359184:exon9:c.A806G:p.Q269R,Irak3:NM_028679:exon9:c.A1082G:p.Q361R"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	88	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9983952	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M1_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	155	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	246	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	196	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999948	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	72	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9962553	CCG	synonymous	NA	NA	NA	NA
M1_p20	chr10	127004710	12A2p6	cell line	sgMsh2	127004710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	113	0	0	NA	exonic	Avil	nonsynonymous SNV	Avil:NM_009635:exon3:c.C80T:p.A27V	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995739	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	251	0	0	NA	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr10	127507730	12A2p6	cell line	sgMsh2	127507730	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	77	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon9:c.A740T:p.Y247F,Stac3:NM_177707:exon9:c.A740T:p.Y247F"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.695813024	2	0.7843827	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	200	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999958	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	127556307	12A2p6	cell line	sgMsh2	127556307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	243	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon53:c.T8466C:p.R2822R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.887278353	1	0.9981891	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	197	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.9981523	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	128	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998078	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	128125327	12A2p6	cell line	sgMsh2	128125327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	384	0	0	NA	exonic	Baz2a	nonsynonymous SNV	Baz2a:NM_054078:exon26:c.A4909G:p.S1637G	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	1.26E-09	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	221	0	0	NA	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9999822	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr10	128269379	12A2p6	cell line	sgMsh2	128269379	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	118	0	0	NA	exonic	Apof	nonsynonymous SNV	Apof:NM_133997:exon2:c.G368A:p.S123N	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	128519189	12A2p6	cell line	sgMsh2	128519189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	324	0	0	NA	exonic	Esyt1	nonsynonymous SNV	Esyt1:NM_011843:exon14:c.A1468G:p.N490D	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	0.737841999	2	0.9990242	TTG	nonsynonymous	GGGTT	10	GGGTTGGGTT	NA
M1_p20	chr10	128521621	12A2p6	cell line	sgMsh2	128521621	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	271	0	0	NA	exonic	Esyt1	stopgain	Esyt1:NM_011843:exon7:c.G823T:p.G275X	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	128795005	12A2p6	cell line	sgMsh2	128795005	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	25	0	0	NA	exonic	Mmp19	nonsynonymous SNV	"Mmp19:NM_001164197:exon4:c.C277A:p.L93M,Mmp19:NM_021412:exon4:c.C493A:p.L165M"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9564025	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	162	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.202897461	NA	2	1	1	0.9958375	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M1_p20	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	77	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.238	187	0	0	NA	exonic	Olfr807	frameshift insertion	Olfr807:NM_146929:exon1:c.762dupT:p.M255Yfs*7	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATA	frameshift	A	5	AAAAA	1
M1_p20	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	313	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	379	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	130425191	12A2p6	cell line	sgMsh2	130425191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	705	0	0	NA	exonic	Vmn2r85	nonsynonymous SNV	Vmn2r85:NM_001102602:exon3:c.T1276C:p.Y426H	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr10	130455795	12A2p6	cell line	sgMsh2	130455795	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	268	0	0	NA	exonic	Vmn2r86	frameshift deletion	Vmn2r86:NM_001103365:exon1:c.100delA:p.S34Vfs*19	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	465	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1_p20	chr11	3144837	12A2p6	cell line	sgMsh2	3144837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	91	0	0	NA	exonic	Sfi1	nonsynonymous SNV	"Sfi1:NM_001363224:exon14:c.G350A:p.R117K,Sfi1:NM_001363222:exon15:c.G425A:p.R142K,Sfi1:NM_001363223:exon15:c.G425A:p.R142K,Sfi1:NM_030207:exon17:c.G1688A:p.R563K"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	1	0.9986312	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	3333389	12A2p6	cell line	sgMsh2	3333389	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.355	66	0	0	NA	exonic	Pik3ip1	frameshift deletion	Pik3ip1:NM_178149:exon4:c.488delA:p.D166Tfs*1	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr11	3488556	12A2p6	cell line	sgMsh2	3488556	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	114	0	0	NA	exonic	Pla2g3	synonymous SNV	Pla2g3:NM_172791:exon1:c.A205C:p.R69R	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	CAG	synonymous	CAGG	8	CAGGCAGG	NA
M1_p20	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	0	0	NA	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	237	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	4681472	12A2p6	cell line	sgMsh2	4681472	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	163	0	0	NA	exonic	Ascc2	synonymous SNV	"Ascc2:NM_001376980:exon18:c.A1690C:p.R564R,Ascc2:NM_029291:exon19:c.A2032C:p.R678R"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.99997	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr11	5062649	12A2p6	cell line	sgMsh2	5062649	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon3:c.A686T:p.K229M,Gas2l1:NM_001190408:exon3:c.A686T:p.K229M,Gas2l1:NM_030228:exon4:c.A686T:p.K229M,Gas2l1:NM_144560:exon4:c.A686T:p.K229M"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988928	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	35	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9738953	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	213	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9997188	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	129	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998178	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	6601350	12A2p6	cell line	sgMsh2	6601350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	35	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1840G:p.S614G	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9738953	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	258	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	9298190	12A2p6	cell line	sgMsh2	9298190	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	205	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon18:c.T7936G:p.L2646V	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999968	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	240	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999995	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	57	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9917335	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	140	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998984	TTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	248	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.999998	GCA	synonymous	NA	NA	NA	NA
M1_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	182	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.99991	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	289	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	3.83E-08	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M1_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	164	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999716	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	30892283	12A2p6	cell line	sgMsh2	30892283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	101	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.T1187C:p.L396P	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9906139	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	341	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	4.74E-08	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	106	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993823	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	178	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.826569834	1	0.8581951	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	33157033	12A2p6	cell line	sgMsh2	33157038	ATCATC	-	Deletion	Mutect2;Vardict	2	0.083	132	0	0	NA	exonic	Npm1	nonframeshift deletion	"Npm1:NM_001252260:exon7:c.493_498del:p.D165_D166del,Npm1:NM_001252261:exon7:c.532_537del:p.D178_D179del,Npm1:NM_008722:exon7:c.532_537del:p.D178_D179del"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.387600544	NA	NA	AAT	inframe	ATC	16	ATCATCATCATCATCA	-6
M1_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	222	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.737841999	2	0.985151	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	279	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	34232862	12A2p6	cell line	sgMsh2	34232862	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	66	0	0	NA	exonic	Dock2	synonymous SNV	Dock2:NM_033374:exon47:c.G4770T:p.V1590V	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.845249378	1	0.8957991	ACA	synonymous	NA	NA	NA	NA
M1_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	124	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9985788	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	471	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	91	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9986312	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	60	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9929421	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.709822682	2	0.9987613	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M1_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	212	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999978	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	197	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999951	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	118	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.817230062	1	0.8101667	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	392	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	1.91E-09	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	278	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AAC	synonymous	AACA	8	AACAAACA	NA
M1_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	78	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	1	0.9972741	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	105	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	387	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1.20E-09	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	291	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	3.45E-08	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	61	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9933046	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	50781843	12A2p6	cell line	sgMsh2	50781843	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	68	0	0	NA	exonic	Adamts2	synonymous SNV	Adamts2:NM_175643:exon12:c.T1917C:p.D639D	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9953733	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	259	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.138	50	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.644444277	2	0.7313848	GCC	synonymous	NA	NA	NA	NA
M1_p20	chr11	51048574	12A2p6	cell line	sgMsh2	51048574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	544	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.C466A:p.L156I	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	197	0	0	NA	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999951	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	96	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	0.9952063	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	221	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	54	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	74	0	0	NA	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.793880632	1	0.7388244	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	257	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	AAC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	64	0	0	NA	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	1	0.9942849	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	110	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9816163	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	157	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999588	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M1_p20	chr11	58047989	12A2p6	cell line	sgMsh2	58047989	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	29	0	0	NA	exonic	Larp1	nonsynonymous SNV	Larp1:NM_028451:exon10:c.G1490A:p.G497D	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9644496	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	71	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9960519	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	883	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1	AGT	synonymous	NA	NA	NA	NA
M1_p20	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.099	817	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.462318721	3	0.779971	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M1_p20	chr11	58971082	12A2p6	cell line	sgMsh2	58971082	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	79	0	0	NA	exonic	Trim17	nonsynonymous SNV	Trim17:NM_031172:exon7:c.T939G:p.S313R	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.779870973	1	0.6578529	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	59055639	12A2p6	cell line	sgMsh2	59055639	G	A	SNV	Mutect2;Vardict	2	0.064	290	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_199152:exon49:c.C13239T:p.A4413A	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.298872708	3	1.02E-09	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.137	173	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.639774391	2	0.9996818	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.181	31	0	0	NA	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.845249378	1	0.8748062	ACG	synonymous	NA	NA	NA	NA
M1_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	148	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999335	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	62313100	12A2p6	cell line	sgMsh2	62313100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	166	0	0	NA	exonic	Ttc19	nonsynonymous SNV	"Ttc19:NM_029704:exon8:c.T847G:p.S283A,Ttc19:NM_028360:exon9:c.T886G:p.S296A"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999744	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9964482	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	112	0	0	NA	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1_p20	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	218	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999984	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.253	433	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1.02E-09	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	65003428	12A2p6	cell line	sgMsh2	65003428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	48	0	0	NA	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_001099288:exon20:c.C2310A:p.P770P	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	1	0.9867368	AGG	synonymous	TGGA	8	TGGATGGA	NA
M1_p20	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	124	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	143	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999133	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	394	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	1.14E-09	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	113	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9484405	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	390	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9967762	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	223	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	67259361	12A2p6	cell line	sgMsh2	67259361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	181	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon39:c.C5643A:p.A1881A	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999885	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	32	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	2	1	1	0.969525	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr11	68972634	12A2p6	cell line	sgMsh2	68972634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	142	0	0	NA	exonic	Rangrf	nonsynonymous SNV	"Rangrf:NM_001285441:exon5:c.T569C:p.F190S,Rangrf:NM_001285442:exon5:c.T524C:p.F175S,Rangrf:NM_001285443:exon5:c.T536C:p.F179S,Rangrf:NM_021329:exon5:c.T545C:p.F182S"	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9920357	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	339	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	3.62E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Strelka2;Vardict	2	0.1667	48	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	0.778470008	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1_p20	chr11	69421776	12A2p6	cell line	sgMsh2	69421776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	36	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon83:c.C12962T:p.T4321I	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9752117	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	49	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.202897461	NA	1	1	1	0.9874139	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	114	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.919967555	1	0.9935174	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	69825656	12A2p6	cell line	sgMsh2	69825656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	45	0	0	NA	exonic	Nlgn2	synonymous SNV	"Nlgn2:NM_198862:exon7:c.C2058T:p.S686S,Nlgn2:NM_001364137:exon8:c.C2058T:p.S686S"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9844822	GGG	synonymous	GGAG	9	GGAGGGAGG	NA
M1_p20	chr11	69966001	12A2p6	cell line	sgMsh2	69966001	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	37	0	0	NA	exonic	Cldn7	synonymous SNV	"Cldn7:NM_016887:exon1:c.T75G:p.T25T,Cldn7:NM_001193619:exon2:c.T75G:p.T25T"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9764633	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	69992384	12A2p6	cell line	sgMsh2	69992384	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	22	0	0	NA	exonic	Gabarap	nonsynonymous SNV	Gabarap:NM_019749:exon2:c.C110A:p.P37H	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9492516	CCC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	61	0	0	NA	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	2	1	1	0.9933046	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	81	0	0	NA	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9976745	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M1_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.826569834	1	0.8575192	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	2	1	1	0.9956115	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	72831554	12A2p6	cell line	sgMsh2	72831554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	74	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon8:c.C1406T:p.T469I	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9966312	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	74667181	12A2p6	cell line	sgMsh2	74667181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	278	0	0	NA	exonic	Cluh	synonymous SNV	"Cluh:NM_001081158:exon21:c.C3397T:p.L1133L,Cluh:NM_001368711:exon22:c.C3283T:p.L1095L"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9999999	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	272	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.803220404	2	0.5287079	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	75490692	12A2p6	cell line	sgMsh2	75490692	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	400	0	0	NA	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon6:c.G918A:p.Q306Q	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	1.10E-09	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	46	0	0	NA	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9852728	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	322	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.9386471	1	0.9999973	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	99	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.891948239	1	0.9771582	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	76066853	12A2p6	cell line	sgMsh2	76066853	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	253	0	0	NA	exonic	Vps53	nonsynonymous SNV	Vps53:NM_026664:exon18:c.A1903T:p.S635C	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9999997	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.969525	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	97	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	2	1	1	0.9990042	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	71	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9960519	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	78231811	12A2p6	cell line	sgMsh2	78231811	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	156	0	0	NA	exonic	Supt6	frameshift deletion	Supt6:NM_009297:exon6:c.585delA:p.K195Nfs*68	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	63	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.859259037	1	0.9170343	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	146	0	0	NA	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.840579492	1	0.918103	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	95	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9988928	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	78751006	12A2p6	cell line	sgMsh2	78751011	CCAAGG	-	Deletion	Strelka2;Vardict	2	0.2319	138	0	0	NA	exonic	Ccnq	nonframeshift deletion	Ccnq:NM_197989:exon1:c.652_657del:p.P218_W219del	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	NA	NA	ACC	inframe	NA	NA	NA	-6
M1_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	147	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	0.905957897	1	0.9952801	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	80133035	12A2p6	cell line	sgMsh2	80133035	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	285	0	0	NA	exonic	Atad5	nonsynonymous SNV	Atad5:NM_001029856:exon21:c.G4972A:p.A1658T	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	4.71E-08	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	80248517	12A2p6	cell line	sgMsh2	80248517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	280	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon13:c.T799C:p.S267P,Rhot1:NM_001163354:exon14:c.T1219C:p.S407P,Rhot1:NM_001163355:exon14:c.T1219C:p.S407P,Rhot1:NM_001362868:exon14:c.T1219C:p.S407P,Rhot1:NM_021536:exon14:c.T1219C:p.S407P,Rhot1:NM_001362869:exon15:c.T958C:p.S320P"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	192	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.202897461	NA	1	1	1	0.9999936	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	83764970	12A2p6	cell line	sgMsh2	83764970	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	194	0	0	NA	exonic	Heatr6	stopgain	Heatr6:NM_145432:exon7:c.C886T:p.R296X	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999942	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	368	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	1.56E-09	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	442	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	297	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.742511885	2	0.9969334	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.999973	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	86226688	12A2p6	cell line	sgMsh2	86226688	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	247	0	0	NA	exonic	Ints2	nonsynonymous SNV	"Ints2:NM_001363130:exon16:c.T2267G:p.M756R,Ints2:NM_001363129:exon17:c.T2207G:p.M736R,Ints2:NM_027421:exon17:c.T2207G:p.M736R"	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.99971	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	298	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.991811	CAA	synonymous	CCT	8	CCTCCTCC	NA
M1_p20	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	102	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.686473252	2	0.9290942	CCA	synonymous	NA	NA	NA	NA
M1_p20	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	236	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.67713348	2	0.9998687	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	77	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9971258	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	108	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994445	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	34	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9725109	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	89016436	12A2p6	cell line	sgMsh2	89016436	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	39	0	0	NA	exonic	Trim25	synonymous SNV	Trim25:NM_009546:exon9:c.G1620A:p.R540R	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9787842	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	207	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.9364876	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	90540235	12A2p6	cell line	sgMsh2	90540235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	264	0	0	NA	exonic	Stxbp4	synonymous SNV	Stxbp4:NM_011505:exon14:c.A1248G:p.Q416Q	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9999937	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr11	90638273	12A2p6	cell line	sgMsh2	90638273	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.625	12	0	0	NA	exonic	Cox11	synonymous SNV	Cox11:NM_199008:exon1:c.T84G:p.T28T	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9164267	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	93597217	12A2p6	cell line	sgMsh2	93597217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	214	0	0	NA	exonic	Car10	nonsynonymous SNV	"Car10:NM_028296:exon7:c.A739G:p.T247A,Car10:NM_001361707:exon8:c.A739G:p.T247A,Car10:NM_001361708:exon8:c.A739G:p.T247A"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.999998	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	141	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999036	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	92	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987019	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	87	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983078	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	113	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9852124	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	176	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.999985	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	97238103	12A2p6	cell line	sgMsh2	97238103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	259	0	0	NA	exonic	Npepps	synonymous SNV	Npepps:NM_008942:exon10:c.T1254C:p.H418H	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr11	97316924	12A2p6	cell line	sgMsh2	97316924	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	107	0	0	NA	exonic	Mrpl45	nonsynonymous SNV	Mrpl45:NM_025927:exon2:c.G244A:p.A82T	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	97328512	12A2p6	cell line	sgMsh2	97328512	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	192	0	0	NA	exonic	Mrpl45	nonsynonymous SNV	Mrpl45:NM_025927:exon8:c.C865A:p.P289T	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	0.9999885	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	97334465	12A2p6	cell line	sgMsh2	97334465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	116	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon12:c.A6863G:p.Y2288C	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.54637667	2	0.9988573	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	97726852	12A2p6	cell line	sgMsh2	97726852	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	68	0	0	NA	exonic	Pip4k2b	synonymous SNV	Pip4k2b:NM_054051:exon4:c.A360T:p.S120S	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.887278353	1	0.9541089	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	203	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999964	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	205	0	0	NA	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999968	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr11	97992302	12A2p6	cell line	sgMsh2	97992302	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	128	0	0	NA	exonic	Arl5c	stopgain	Arl5c:NM_207231:exon5:c.C471A:p.C157X	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998078	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	98029849	12A2p6	cell line	sgMsh2	98029849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	160	0	0	NA	exonic	Rpl19	nonsynonymous SNV	"Rpl19:NM_001159483:exon5:c.A425G:p.K142R,Rpl19:NM_009078:exon5:c.A431G:p.K144R"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	53	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9897976	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	98111013	12A2p6	cell line	sgMsh2	98111013	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	110	0	0	NA	exonic	Fbxl20	frameshift deletion	Fbxl20:NM_028149:exon5:c.251delA:p.N84Ifs*12	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1_p20	chr11	98157518	12A2p6	cell line	sgMsh2	98157518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	127	0	0	NA	exonic	Med1	nonsynonymous SNV	"Med1:NM_001080118:exon17:c.G2451T:p.Q817H,Med1:NM_013634:exon17:c.G2406T:p.Q802H"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9997973	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	158	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999495	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	143	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999133	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr11	99949306	12A2p6	cell line	sgMsh2	99949306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	544	0	0	NA	exonic	Krtap9-5	nonsynonymous SNV	Krtap9-5:NM_001085527:exon1:c.A832G:p.T278A	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	100492613	12A2p6	cell line	sgMsh2	100492613	T	-	Deletion	Mutect2;Vardict	2	0.211	44	0	0	NA	exonic	Acly	frameshift deletion	"Acly:NM_134037:exon19:c.2127delA:p.I709Mfs*54,Acly:NM_001199296:exon20:c.2157delA:p.I719Mfs*54"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.98534596	NA	NA	CTA	frameshift	C	5	CCCCC	-1
M1_p20	chr11	100592887	12A2p6	cell line	sgMsh2	100592887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	215	0	0	NA	exonic	Dnajc7	synonymous SNV	"Dnajc7:NM_001378962:exon6:c.T519C:p.L173L,Dnajc7:NM_019795:exon6:c.T567C:p.L189L"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999981	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr11	100893082	12A2p6	cell line	sgMsh2	100893082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	65	0	0	NA	exonic	Stat3	nonsynonymous SNV	"Stat3:NM_011486:exon21:c.A2093G:p.D698G,Stat3:NM_213659:exon21:c.A2093G:p.D698G,Stat3:NM_213660:exon21:c.A2093G:p.D698G"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.789210745	1	0.7378886	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	101076863	12A2p6	cell line	sgMsh2	101076863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	95	0	0	NA	exonic	Naglu	synonymous SNV	Naglu:NM_013792:exon6:c.A1638G:p.P546P	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9988928	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	100	0	0	NA	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.8727453	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	124	0	0	NA	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	101156833	12A2p6	cell line	sgMsh2	101156833	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	153	0	0	NA	exonic	Tubg2	synonymous SNV	Tubg2:NM_134028:exon3:c.C243A:p.S81S	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.999949	CCT	synonymous	CTC	8	CTCCTCCT	NA
M1_p20	chr11	101248025	12A2p6	cell line	sgMsh2	101248025	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	110	0	0	NA	exonic	Ramp2	nonsynonymous SNV	Ramp2:NM_019444:exon4:c.C529A:p.L177I	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	110	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	25	0	0	NA	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9564025	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	102156311	12A2p6	cell line	sgMsh2	102156311	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	89	0	0	NA	exonic	Tmem101	synonymous SNV	Tmem101:NM_029649:exon1:c.C34T:p.L12L	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9754271	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr11	102455998	12A2p6	cell line	sgMsh2	102455998	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	42	0	0	NA	exonic	Itga2b	synonymous SNV	Itga2b:NM_010575:exon28:c.G2829A:p.R943R	11qD	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9818514	GCC	synonymous	NA	NA	NA	NA
M1_p20	chr11	102800811	12A2p6	cell line	sgMsh2	102800811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	105	0	0	NA	exonic	Gjc1	nonsynonymous SNV	"Gjc1:NM_001159382:exon3:c.A365G:p.K122R,Gjc1:NM_001159383:exon3:c.A365G:p.K122R,Gjc1:NM_001359040:exon3:c.A365G:p.K122R,Gjc1:NM_008122:exon3:c.A365G:p.K122R"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	68	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9953733	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	90	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9985566	CCC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	60	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9929421	TTC	synonymous	NA	NA	NA	NA
M1_p20	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	100	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.929307328	1	0.9927187	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	105973467	12A2p6	cell line	sgMsh2	105973467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	135	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon9:c.A1433G:p.Q478R,Ace:NM_207624:exon9:c.A1433G:p.Q478R"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998675	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	170	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999793	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	390	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	1.17E-09	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	107	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	106864712	12A2p6	cell line	sgMsh2	106864712	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	53	0	0	NA	exonic	Smurf2	nonsynonymous SNV	Smurf2:NM_025481:exon5:c.G400T:p.V134L	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9897976	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	41	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.691143138	1	0.5191221	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M1_p20	chr11	107604288	12A2p6	cell line	sgMsh2	107604288	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.22	255	0	0	NA	exonic	Helz	frameshift insertion	"Helz:NM_198298:exon11:c.1088dupA:p.T364Nfs*18,Helz:NM_001368755:exon12:c.1088dupA:p.T364Nfs*18"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M1_p20	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	121	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997213	ATA	synonymous	ATAA	8	ATAAATAA	NA
M1_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	192	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9964252	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	110158302	12A2p6	cell line	sgMsh2	110158302	-	A	Insertion	Mutect2;Vardict	2	0.227	78	0	0	NA	exonic	Abca9	frameshift insertion	Abca9:NM_147220:exon6:c.678dupT:p.I227Yfs*139	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ATA	frameshift	A	5	AAAAA	1
M1_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.269	285	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	4.71E-08	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	61	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9853138	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	113656221	12A2p6	cell line	sgMsh2	113656221	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.227	237	0	0	NA	exonic	Cog1	nonsynonymous SNV	Cog1:NM_013581:exon7:c.C1640T:p.T547M	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	126	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997863	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	507	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	133	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998526	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.214	22	0	0	NA	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9490429	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	115881188	12A2p6	cell line	sgMsh2	115881188	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	98	0	0	NA	exonic	Myo15b	synonymous SNV	Myo15b:NM_001384233:exon30:c.G5157T:p.L1719L	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990557	TGG	synonymous	NA	NA	NA	NA
M1_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	41	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	0.873268695	1	0.9132274	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	176	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.999985	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	47	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	2	1	1	0.9860236	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	267	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	42	0	0	NA	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83185009-116396617	4	2	2	0.9	4.202897461	NA	1	1	1	0.9818514	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	118	0	0	NA	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	54	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	18	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9379655	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992757	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	118268671	12A2p6	cell line	sgMsh2	118268671	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	143	0	0	NA	exonic	Usp36	nonsynonymous SNV	Usp36:NM_001033528:exon14:c.C1946A:p.A649E	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.9996977	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	16	0	0	NA	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	2	1	1	0.931463	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	119350079	12A2p6	cell line	sgMsh2	119350079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	155	0	0	NA	exonic	Sgsh	nonsynonymous SNV	Sgsh:NM_018822:exon5:c.G561T:p.Q187H	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	62	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9936486	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	20	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9438777	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	290	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	3.63E-08	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	38	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9776532	TAC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	264	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	0.695813024	2	0.9998341	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	162	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	94	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	2	1	1	0.9988325	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	85	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9981186	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	120642909	12A2p6	cell line	sgMsh2	120642909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	146	0	0	NA	exonic	Pycr1	nonsynonymous SNV	"Pycr1:NM_001379087:exon2:c.A82G:p.T28A,Pycr1:NM_001379088:exon2:c.A31G:p.T11A,Pycr1:NM_001379089:exon2:c.A31G:p.T11A,Pycr1:NM_001348222:exon3:c.A121G:p.T41A,Pycr1:NM_001379085:exon3:c.A121G:p.T41A,Pycr1:NM_001379086:exon3:c.A211G:p.T71A"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.918103	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	120654486	12A2p6	cell line	sgMsh2	120654486	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.139	68	0	0	NA	exonic	Notum	nonsynonymous SNV	"Notum:NM_001382269:exon12:c.A1246G:p.R416G,Notum:NM_175263:exon12:c.A1246G:p.R416G"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	0.649114163	2	0.8700976	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr11	120792493	12A2p6	cell line	sgMsh2	120792493	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	70	0	0	NA	exonic	Dus1l	frameshift deletion	Dus1l:NM_026824:exon8:c.704delA:p.N235Tfs*60	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr11	121055920	12A2p6	cell line	sgMsh2	121055920	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	242	0	0	NA	exonic	Sectm1b	frameshift deletion	Sectm1b:NM_026907:exon4:c.148delC:p.R50Afs*2	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M1_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	224	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-116437720-121956668	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	204	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M1_p20	chr12	4201333	12A2p6	cell line	sgMsh2	4201333	A	T	SNV	Mutect2;Vardict	2	0.133	42	0	0	NA	exonic	Adcy3	nonsynonymous SNV	"Adcy3:NM_138305:exon10:c.A1954T:p.I652F,Adcy3:NM_001159536:exon11:c.A1954T:p.I652F,Adcy3:NM_001159537:exon11:c.A1954T:p.I652F"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.621094847	2	0.7011686	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.868598809	1	0.9606353	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	213	0	0	NA	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.635104505	2	0.9999757	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	4866191	12A2p6	cell line	sgMsh2	4866191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	71	0	0	NA	exonic	Mfsd2b	synonymous SNV	Mfsd2b:NM_001033488:exon11:c.C1107T:p.G369G	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	0.9217381	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	211	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999977	GTT	synonymous	TTA	8	TTATTATT	NA
M1_p20	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	242	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.882608467	1	0.997398	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	197	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.751851657	2	0.936003	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M1_p20	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	182	0	0	NA	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.672463594	2	0.9988296	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	190	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.868598809	1	0.9857619	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Vardict	2	0.129	61	0	0	NA	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.602415303	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1_p20	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	333	0	0	NA	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.709822682	2	0.9999554	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr12	11317790	12A2p6	cell line	sgMsh2	11317790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	431	0	0	NA	exonic	Smc6	nonsynonymous SNV	"Smc6:NM_001324476:exon26:c.T2606C:p.L869P,Smc6:NM_025695:exon27:c.T3200C:p.L1067P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.751851657	2	0.9996513	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	11456271	12A2p6	cell line	sgMsh2	11456271	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	20	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.G193A:p.E65K	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	0.9183073	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	193	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.821899948	1	0.8218509	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	17175107	12A2p6	cell line	sgMsh2	17175107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	317	0	0	NA	exonic	Kcnf1	nonsynonymous SNV	Kcnf1:NM_201531:exon1:c.A1112G:p.Q371R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.779870973	2	0.9359444	CTG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr12	17278908	12A2p6	cell line	sgMsh2	17278908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	179	0	0	NA	exonic	Pdia6	synonymous SNV	Pdia6:NM_027959:exon7:c.T657C:p.A219A	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.821899948	1	0.8243013	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	507	0	0	NA	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.770531201	2	0.9988743	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	355	0	0	NA	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.765861315	2	0.9912557	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	28863025	12A2p6	cell line	sgMsh2	28863025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	382	0	0	NA	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.T424C:p.Y142H,Eipr1:NM_201357:exon7:c.T724C:p.Y242H,Eipr1:NM_001379229:exon8:c.T424C:p.Y142H"	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.845249378	1	0.9823802	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	29990976	12A2p6	cell line	sgMsh2	29990976	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	460	0	0	NA	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon10:c.G1250A:p.S417N	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.817230062	1	0.6348616	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	31305879	12A2p6	cell line	sgMsh2	31305879	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	311	0	0	NA	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon21:c.C2967A:p.A989A	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.401610202	3	0.9999181	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	147	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.887278353	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	311	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	5.77E-09	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	561	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.681803366	2	1.12E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	430	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	1.04E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	32848661	12A2p6	cell line	sgMsh2	32848661	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	103	0	0	NA	exonic	Nampt	frameshift deletion	Nampt:NM_021524:exon10:c.1275delA:p.K427Rfs*40	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.835909606	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	270	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.434299404	3	0.9547931	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	332	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	2.52E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	44207019	12A2p6	cell line	sgMsh2	44207019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	394	0	0	NA	exonic	Dnajb9	nonsynonymous SNV	Dnajb9:NM_013760:exon3:c.T604C:p.C202R	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.798550518	2	0.8201354	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	218	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.779870973	2	0.7848792	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	45019576	12A2p6	cell line	sgMsh2	45019576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	149	0	0	NA	exonic	Stxbp6	synonymous SNV	Stxbp6:NM_144552:exon2:c.T45C:p.L15L	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.999937	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	232	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.67713348	2	0.9998427	CTG	synonymous	ACCT	8	ACCTACCT	NA
M1_p20	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	221	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.289532936	3	4.16E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	310	0	0	NA	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.719162454	2	0.9997567	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	51603525	12A2p6	cell line	sgMsh2	51603525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	337	0	0	NA	exonic	Coch	synonymous SNV	"Coch:NM_007728:exon10:c.C1296T:p.V432V,Coch:NM_001198835:exon11:c.C1296T:p.V432V"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.639774391	2	3.00E-08	TCC	synonymous	NA	NA	NA	NA
M1_p20	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	241	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.705152796	2	0.9991808	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M1_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	64	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	0.7041407	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	53140127	12A2p6	cell line	sgMsh2	53140127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T4323C:p.S1441S	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999968	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr12	53142284	12A2p6	cell line	sgMsh2	53142284	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	301	0	0	NA	exonic	Akap6	synonymous SNV	Akap6:NM_198111:exon13:c.T6480C:p.D2160D	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.593075531	2	4.08E-09	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr12	54068603	12A2p6	cell line	sgMsh2	54068603	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	10	0	0	NA	exonic	Npas3	synonymous SNV	"Npas3:NM_001370960:exon11:c.C2301T:p.G767G,Npas3:NM_001370963:exon11:c.C2304T:p.G768G,Npas3:NM_001370961:exon12:c.C2400T:p.G800G,Npas3:NM_001370962:exon12:c.C2385T:p.G795G,Npas3:NM_013780:exon12:c.C2394T:p.G798G,Npas3:NM_001370964:exon13:c.C2439T:p.G813G"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.09175058	GCC	synonymous	NA	NA	NA	NA
M1_p20	chr12	54673782	12A2p6	cell line	sgMsh2	54673782	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	224	0	0	NA	exonic	Eapp	nonsynonymous SNV	"Eapp:NM_001331162:exon5:c.T533G:p.V178G,Eapp:NM_025456:exon6:c.T647G:p.V216G"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.85458915	1	0.9764311	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	144	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M1_p20	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	420	0	0	NA	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.826569834	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M1_p20	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	228	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.579065872	2	0.9999997	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	360	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.686473252	2	0.9999987	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	500	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.821899948	1	0.7613209	CAA	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	196	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1_p20	chr12	65158554	12A2p6	cell line	sgMsh2	65158554	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.144	450	0	0	NA	exonic	Mis18bp1	frameshift insertion	Mis18bp1:NM_172578:exon3:c.842dupA:p.N281Kfs*1	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.672463594	NA	NA	CAT	frameshift	NA	NA	NA	1
M1_p20	chr12	65158831	12A2p6	cell line	sgMsh2	65158831	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	127	0	0	NA	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon3:c.566delA:p.N189Mfs*11	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	282	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.719162454	2	0.9993954	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	263	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999999	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	279	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.681803366	2	0.9999722	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	66722938	12A2p6	cell line	sgMsh2	66722938	-	A	Insertion	Mutect2;Vardict	2	0.138	219	0	0	NA	exonic	Mdga2	frameshift insertion	"Mdga2:NM_001193266:exon4:c.579dupT:p.T194Yfs*19,Mdga2:NM_207010:exon4:c.579dupT:p.T194Yfs*19"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.644444277	NA	NA	GTA	frameshift	A	5	AAAAA	1
M1_p20	chr12	67220976	12A2p6	cell line	sgMsh2	67220976	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	508	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon1:c.G67T:p.V23L,Mdga2:NM_207010:exon1:c.G67T:p.V23L"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.714492568	2	0.9999998	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	520	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.999355619	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	79	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.775201087	1	7.56E-08	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr12	70161458	12A2p6	cell line	sgMsh2	70161458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	350	0	0	NA	exonic	Abhd12b	synonymous SNV	Abhd12b:NM_001195033:exon3:c.T231C:p.A77A	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.616424961	2	2.15E-09	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	310	0	0	NA	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.9996218	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	248	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.709822682	2	0.9990987	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	298	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.891948239	1	0.9995765	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M1_p20	chr12	73285203	12A2p6	cell line	sgMsh2	73285203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	375	0	0	NA	exonic	Trmt5	nonsynonymous SNV	Trmt5:NM_029580:exon2:c.A78G:p.I26M	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.798550518	2	0.7956264	ATA	nonsynonymous	AAC	8	AACAACAA	NA
M1_p20	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	361	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.784540859	2	0.9418335	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	335	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.588405645	2	1.17E-09	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	567	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.901288011	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	157	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.80789029	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	233	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999993	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	87	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.761191429	1	5.18E-08	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	76328236	12A2p6	cell line	sgMsh2	76328236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	117	0	0	NA	exonic	Akap5	synonymous SNV	Akap5:NM_001101471:exon2:c.A420G:p.E140E	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.980676074	1	0.9993138	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	114	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	0.9935007	CTC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr12	76910260	12A2p6	cell line	sgMsh2	76910260	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	136	0	0	NA	exonic	Fntb	nonsynonymous SNV	Fntb:NM_145927:exon9:c.G872A:p.R291H	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.658453936	2	0.9943988	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999992	TCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	136	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9998743	AGA	synonymous	NA	NA	NA	NA
M1_p20	chr12	80662488	12A2p6	cell line	sgMsh2	80662488	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	250	0	0	NA	exonic	Slc39a9	nonsynonymous SNV	Slc39a9:NM_026244:exon2:c.A115C:p.T39P	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.607085189	2	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	472	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.9999975	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	387	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.65378405	2	9.89E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	477	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.709822682	2	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	283	0	0	NA	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.957326644	1	0.999998	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	83047561	12A2p6	cell line	sgMsh2	83047561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	1081	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon4:c.A187G:p.T63A,Rgs6:NM_001310478:exon4:c.A187G:p.T63A,Rgs6:NM_015812:exon4:c.A187G:p.T63A"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.597745417	2	1	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	461	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.625764733	2	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	249	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.742511885	2	0.9896945	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	286	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.471658493	2	0.9223596	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	85268015	12A2p6	cell line	sgMsh2	85268015	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	422	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.A1396C:p.S466R,Mlh3:NM_175337:exon2:c.A1396C:p.S466R"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.887278353	1	0.9999365	CTG	nonsynonymous	TGT	8	TGTTGTTG	NA
M1_p20	chr12	85290538	12A2p6	cell line	sgMsh2	85290538	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	58	0	0	NA	exonic	Zc2hc1c	frameshift deletion	Zc2hc1c:NM_172414:exon2:c.968delG:p.E324Kfs*2	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M1_p20	chr12	85933391	12A2p6	cell line	sgMsh2	85933391	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	259	0	0	NA	exonic	Ttll5	synonymous SNV	"Ttll5:NM_001364628:exon26:c.G2232A:p.S744S,Ttll5:NM_001081423:exon27:c.G2748A:p.S916S,Ttll5:NM_001347395:exon27:c.G2748A:p.S916S,Ttll5:NM_001364624:exon27:c.G2748A:p.S916S,Ttll5:NM_001364625:exon27:c.G2748A:p.S916S,Ttll5:NM_001364626:exon27:c.G2748A:p.S916S,Ttll5:NM_001364627:exon27:c.G2454A:p.S818S,Ttll5:NM_001364630:exon27:c.G981A:p.S327S"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.803220404	2	0.5063252	CGT	synonymous	NA	NA	NA	NA
M1_p20	chr12	86745035	12A2p6	cell line	sgMsh2	86745035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	335	0	0	NA	exonic	Lrrc74a	synonymous SNV	Lrrc74a:NM_001195767:exon6:c.A585G:p.L195L	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.845249378	1	0.9768624	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	79	0	0	NA	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	9.97E-05	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	87279780	12A2p6	cell line	sgMsh2	87279780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	0	0	NA	exonic	Ism2	nonsynonymous SNV	Ism2:NM_001290302:exon6:c.T1384C:p.Y462H	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9693067	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	108	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.789210745	1	0.6352529	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	110	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.471658493	2	0.9114988	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	62	0	0	NA	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.761191429	1	0.6315613	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	379	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9992836	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	178	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.97757	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr12	98680091	12A2p6	cell line	sgMsh2	98680091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	356	0	0	NA	exonic	Ptpn21	nonsynonymous SNV	"Ptpn21:NM_001146199:exon17:c.C3107T:p.T1036M,Ptpn21:NM_011877:exon17:c.C3107T:p.T1036M"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.9999095	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	426	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.616424961	2	1.01E-09	TGA	synonymous	NA	NA	NA	NA
M1_p20	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	192	0	0	NA	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.765861315	2	0.8519491	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	106	0	0	NA	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9993823	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	198	0	0	NA	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.686473252	2	0.9987099	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	94	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.410949974	3	0.6897303	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	152	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999446	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	101058512	12A2p6	cell line	sgMsh2	101058512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	315	0	0	NA	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A727G:p.T243A,Ppp4r3a:NM_211355:exon4:c.A727G:p.T243A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.803220404	2	0.6014503	GTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.184	434	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.859259037	NA	NA	CCA	frameshift	NA	NA	NA	1
M1_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	123	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M1_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	197	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.859259037	1	0.9774192	TTC	synonymous	NA	NA	NA	NA
M1_p20	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.171	437	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.798550518	2	0.8670399	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	318	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.845249378	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr12	103113063	12A2p6	cell line	sgMsh2	103113063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	124	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon30:c.A5429C:p.D1810A	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.789210745	1	0.5929412	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	118	0	0	NA	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.756521543	2	0.6754193	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr12	103576428	12A2p6	cell line	sgMsh2	103576428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	135	0	0	NA	exonic	Ppp4r4	nonsynonymous SNV	Ppp4r4:NM_028980:exon4:c.G448T:p.G150C	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.737841999	2	0.8653948	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	103675211	12A2p6	cell line	sgMsh2	103675211	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	225	0	0	NA	exonic	Serpina16	nonsynonymous SNV	Serpina16:NM_001310472:exon3:c.A254G:p.D85G	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9933998	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	105217454	12A2p6	cell line	sgMsh2	105217454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	284	0	0	NA	exonic	Tcl1	nonsynonymous SNV	"Tcl1:NM_001289468:exon3:c.G539T:p.R180M,Tcl1:NM_001309484:exon3:c.G266T:p.R89M"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.789210745	2	0.8038724	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.148	158	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.691143138	NA	NA	TGT	frameshift	T	5	TTTTT	1
M1_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	154	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.882608467	1	0.9881789	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	109033003	12A2p6	cell line	sgMsh2	109033003	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	67	0	0	NA	exonic	Begain	nonsynonymous SNV	"Begain:NM_001163175:exon7:c.A1841G:p.Y614C,Begain:NM_001374201:exon7:c.A1835G:p.Y612C,Begain:NM_001374202:exon7:c.A1823G:p.Y608C,Begain:NM_001374203:exon7:c.A1784G:p.Y595C,Begain:NM_001374200:exon8:c.A1931G:p.Y644C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	0.967234	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	76	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9969696	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	110868624	12A2p6	cell line	sgMsh2	110868624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	141	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon7:c.T2084C:p.L695P,Zfp839:NM_028365:exon8:c.T2312C:p.L771P"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.882608467	1	0.9852406	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111303847	12A2p6	cell line	sgMsh2	111303847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	421	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon27:c.A3517C:p.I1173L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.663123822	2	5.95E-09	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111321076	12A2p6	cell line	sgMsh2	111321076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	80	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon13:c.A1772G:p.K591R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.70048291	2	0.7852343	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111429503	12A2p6	cell line	sgMsh2	111429503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	107	0	0	NA	exonic	Exoc3l4	nonsynonymous SNV	"Exoc3l4:NM_001289489:exon12:c.T1949C:p.L650P,Exoc3l4:NM_028807:exon12:c.T1949C:p.L650P,Exoc3l4:NM_001289487:exon13:c.T1949C:p.L650P,Exoc3l4:NM_001289488:exon13:c.T1949C:p.L650P"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.859259037	1	0.9453683	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	240	0	0	NA	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.793880632	2	0.6405203	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	102	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.826569834	1	0.8561322	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	84	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.607085189	2	0.978791	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	103	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.765861315	2	0.5305936	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	150	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999402	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	198	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.770531201	2	0.8288929	AGT	synonymous	NA	NA	NA	NA
M1_p20	chr12	113489969	12A2p6	cell line	sgMsh2	113489969	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	573	0	0	NA	exonic	Adam6b	synonymous SNV	Adam6b:NM_001009545:exon1:c.T405G:p.T135T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.714492568	2	2.18E-08	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	355	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.621094847	2	2.38E-09	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	254	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.593075531	2	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	353	0	0	NA	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.929307328	1	0.9999975	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	127	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.518357354	2	0.9962294	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M1_p20	chr12	117613409	12A2p6	cell line	sgMsh2	117613409	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	51	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon7:c.C761A:p.A254D,Rapgef5:NM_175930:exon9:c.C566A:p.A189D"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.845249378	1	0.8872193	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	83	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9507787	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	117721284	12A2p6	cell line	sgMsh2	117721284	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.123	302	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon17:c.T1664G:p.V555G,Rapgef5:NM_175930:exon19:c.T1469G:p.V490G"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.574395986	2	4.60E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	258	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.873268695	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	194	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999279	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	746	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.910627783	1	1.73E-09	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	118008839	12A2p6	cell line	sgMsh2	118008839	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	732	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.A8609G:p.Y2870C	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.635104505	2	1	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	118127454	12A2p6	cell line	sgMsh2	118127454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	71	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon15:c.A2942G:p.Y981C	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9960519	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	118131009	12A2p6	cell line	sgMsh2	118131009	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	194	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon14:c.G2323A:p.D775N	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.695813024	2	0.997347	TCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	95	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	2	1	1	0.9988928	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	388	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.202897461	NA	1	0.775201087	2	0.9856456	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	14019791	12A2p6	cell line	sgMsh2	14019791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	175	0	0	NA	exonic	Tbce	synonymous SNV	Tbce:NM_178337:exon4:c.A282G:p.G94G	13qA1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999842	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	207	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999971	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	19660610	12A2p6	cell line	sgMsh2	19660610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	530	0	0	NA	exonic	Nme8	nonsynonymous SNV	"Nme8:NM_001167909:exon12:c.T1025C:p.I342T,Nme8:NM_181591:exon12:c.T1025C:p.I342T"	13qA2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	21133240	12A2p6	cell line	sgMsh2	21133240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	1002	0	0	NA	exonic	Olfr263	nonsynonymous SNV	Olfr263:NM_010984:exon1:c.A464G:p.N155S	13qA2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	350	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	2.46E-09	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr13	22524076	12A2p6	cell line	sgMsh2	22524076	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	237	0	0	NA	exonic	Vmn1r203	frameshift deletion	Vmn1r203:NM_134236:exon1:c.26delA:p.M11Wfs*2	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	AGGA	9	AGGAAGGAA	-1
M1_p20	chr13	22524943	12A2p6	cell line	sgMsh2	22524943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	297	0	0	NA	exonic	Vmn1r203	nonsynonymous SNV	Vmn1r203:NM_134236:exon1:c.A893G:p.D298G	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	2.54E-08	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	121	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997213	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.641	336	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	2	1	1	4.07E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	24710226	12A2p6	cell line	sgMsh2	24710226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	127	0	0	NA	exonic	Ripor2	nonsynonymous SNV	"Ripor2:NM_001286100:exon16:c.A2161G:p.T721A,Ripor2:NM_029679:exon16:c.A2236G:p.T746A"	13qA3.1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	0.905957897	1	0.9923301	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	283	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	33486605	12A2p6	cell line	sgMsh2	33486605	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	379	0	0	NA	exonic	Serpinb9g	frameshift deletion	Serpinb9g:NM_011455:exon2:c.75delA:p.N27Mfs*6	13qA3.3	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	25	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9564025	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	62	0	0	NA	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9936486	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	163	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.99997	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	147	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999299	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	49627300	12A2p6	cell line	sgMsh2	49627300	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	47	0	0	NA	exonic	Cenpp	frameshift deletion	Cenpp:NM_025495:exon5:c.516delT:p.F172Lfs*46	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	196	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999948	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	72	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9962553	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	71	0	0	NA	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9960519	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	39	0	0	NA	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9787842	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M1_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.342	58	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1_p20	chr13	59718309	12A2p6	cell line	sgMsh2	59718309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	64	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3270C:p.K1090N	13qB2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9942849	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	60725397	12A2p6	cell line	sgMsh2	60725397	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	113	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon12:c.A1112C:p.D371A,Dapk1:NM_029653:exon12:c.A1112C:p.D371A,Dapk1:NM_134062:exon12:c.A1112C:p.D371A"	13qB2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	2	1	1	0.9995739	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	269	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	61251720	12A2p6	cell line	sgMsh2	61251720	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	158	0	0	NA	exonic	Cts8	frameshift deletion	Cts8:NM_019541:exon5:c.424delT:p.S142Lfs*5	13qB2	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	69	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-66008860	3	2	1	0.9	4.202897461	NA	2	1	1	0.9956115	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	38	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	0.971336302	1	0.9691239	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	212	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999978	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	81270879	12A2p6	cell line	sgMsh2	81270879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	117	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon85:c.C17996T:p.T5999M	13qC3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996554	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	133	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	2	1	1	0.9998526	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	115	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996168	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	85225580	12A2p6	cell line	sgMsh2	85225580	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	297	0	0	NA	exonic	Rasa1	nonsynonymous SNV	Rasa1:NM_145452:exon18:c.T2362G:p.L788V	13qC3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	2.54E-08	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	49	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9874139	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	148	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999335	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr13	100060821	12A2p6	cell line	sgMsh2	100060821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	87	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A3055G:p.T1019A	13qD1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9983078	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	100655392	12A2p6	cell line	sgMsh2	100655392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	149	0	0	NA	exonic	Taf9	synonymous SNV	"Taf9:NM_001015889:exon3:c.A342G:p.R114R,Taf9:NM_027139:exon3:c.A342G:p.R114R"	13qD1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.999937	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr13	106953470	12A2p6	cell line	sgMsh2	106953470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.355	388	0	0	NA	exonic	Dimt1	frameshift deletion	Dimt1:NM_025447:exon9:c.700delA:p.N235Tfs*30	13qD2.1	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	54	0	0	NA	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.99032	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr13	119404633	12A2p6	cell line	sgMsh2	119404633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	81	0	0	NA	exonic	Nnt	nonsynonymous SNV	Nnt:NM_001308506:exon2:c.A70G:p.K24E	13qD2.3	chr13-66854181-119495179	3	2	1	0.9	4.202897461	NA	1	1	1	0.9976745	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	162	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999684	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	44	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.202897461	NA	1	1	1	0.9836498	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	14089311	12A2p6	cell line	sgMsh2	14089311	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	111	0	0	NA	exonic	Atxn7	nonsynonymous SNV	Atxn7:NM_139227:exon6:c.C826A:p.L276I	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.202897461	NA	1	1	1	0.9995262	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	116	0	0	NA	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996366	TTA	synonymous	NA	NA	NA	NA
M1_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	136	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998743	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	98	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	2	1	1	0.9990557	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	24190421	12A2p6	cell line	sgMsh2	24190421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	13	0	0	NA	exonic	Dlg5	nonsynonymous SNV	"Dlg5:NM_027726:exon4:c.T692C:p.L231P,Dlg5:NM_001163513:exon5:c.T761C:p.L254P"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	2	1	1	0.9204646	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	24457069	12A2p6	cell line	sgMsh2	24457069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	263	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon23:c.A3019G:p.T1007A	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9969696	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	184	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999902	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	178	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999865	GAA	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	77	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	0.980676074	1	0.9908741	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	84	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	2	1	1	0.9980162	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	255	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	207	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999971	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	31147779	12A2p6	cell line	sgMsh2	31147779	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	130	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon41:c.C4315A:p.P1439T	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998272	GGG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M1_p20	chr14	31148296	12A2p6	cell line	sgMsh2	31148296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	44	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon38:c.C4074T:p.R1358R	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9836498	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	137	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998808	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	72	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9962553	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	31577180	12A2p6	cell line	sgMsh2	31577180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	256	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon1:c.G69A:p.Q23Q	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999998	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr14	32201704	12A2p6	cell line	sgMsh2	32201704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	35	0	0	NA	exonic	Timm23	synonymous SNV	Timm23:NM_016897:exon1:c.A45G:p.L15L	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	2	1	1	0.9738953	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	123	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	2	1	1	0.9997494	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	71	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9960519	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.2381	21	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr14	34434451	12A2p6	cell line	sgMsh2	34434451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	163	0	0	NA	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon7:c.G458T:p.W153L	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.99997	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	135	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998675	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	159	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999629	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	37081422	12A2p6	cell line	sgMsh2	37081422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	154	0	0	NA	exonic	Cdhr1	nonsynonymous SNV	Cdhr1:NM_130878:exon15:c.A1696G:p.T566A	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999517	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	52	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.202897461	NA	1	1	1	0.9892472	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.222	256	0	0	NA	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	149	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.999937	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	88	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9983952	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.656	38	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M1_p20	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	179	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9999872	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	50237914	12A2p6	cell line	sgMsh2	50237914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	70	0	0	NA	exonic	Olfr731	nonsynonymous SNV	Olfr731:NM_146363:exon1:c.T970C:p.S324P	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9958375	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	80	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.997548	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr14	50360968	12A2p6	cell line	sgMsh2	50360968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	249	0	0	NA	exonic	Tlr11	frameshift deletion	Tlr11:NM_205819:exon2:c.410delT:p.F139Lfs*8	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	328	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	5.70E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	245	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9999996	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	46	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	2	1	1	0.9852728	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9956115	CGT	synonymous	NA	NA	NA	NA
M1_p20	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	47	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9860236	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	51911110	12A2p6	cell line	sgMsh2	51911110	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	25	0	0	NA	exonic	Ndrg2	synonymous SNV	"Ndrg2:NM_001360264:exon3:c.C102A:p.A34A,Ndrg2:NM_001360265:exon3:c.C93A:p.A31A,Ndrg2:NM_001360266:exon3:c.C93A:p.A31A,Ndrg2:NM_001360269:exon3:c.C93A:p.A31A,Ndrg2:NM_013864:exon3:c.C93A:p.A31A,Ndrg2:NM_001360267:exon4:c.C93A:p.A31A,Ndrg2:NM_001360268:exon4:c.C93A:p.A31A"	14qC1	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9564025	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	57	0	0	NA	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9917335	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	153	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.999949	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	134	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	1	1	1	0.9998602	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M1_p20	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.554	44	0	0	NA	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-44852972-53132795	3.13208169	3.13208169	0	0.9	4.202897461	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	62	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9936486	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	96	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.99895	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	44	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9836498	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	76	0	0	NA	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9969696	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	55718523	12A2p6	cell line	sgMsh2	55718523	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	92	0	0	NA	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.C1276T:p.R426C,Rabggta:NM_001360387:exon14:c.C1276T:p.R426C,Rabggta:NM_001360388:exon14:c.C1276T:p.R426C"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9987019	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	76	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9969696	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	136	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998743	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	56465674	12A2p6	cell line	sgMsh2	56465674	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	175	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon15:c.A1881G:p.V627V	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	2	1	1	0.9999842	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	137	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998808	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	299	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	2.29E-08	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	57597104	12A2p6	cell line	sgMsh2	57597104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	41	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.A2018G:p.E673G,Xpo4:NM_001368697:exon16:c.A1796G:p.E599G"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9808807	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	261	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	226	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999989	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M1_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	81	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9976745	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	55	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.990816	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M1_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.392	189	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.292	240	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999995	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr14	70467187	12A2p6	cell line	sgMsh2	70467187	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	75	0	0	NA	exonic	Phyhip	nonsynonymous SNV	Phyhip:NM_145981:exon5:c.T845G:p.L282R	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9968049	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	73198565	12A2p6	cell line	sgMsh2	73198565	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.541	98	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon26:c.G2659A:p.E887K	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	2	1	1	0.9990557	TCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	73216777	12A2p6	cell line	sgMsh2	73216777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	264	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon18:c.T1680G:p.D560E	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	79	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9974147	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	227	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.999999	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	156	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999565	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	79769726	12A2p6	cell line	sgMsh2	79769726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	55	0	0	NA	exonic	Pcdh8	nonsynonymous SNV	"Pcdh8:NM_001042726:exon1:c.A1396G:p.T466A,Pcdh8:NM_021543:exon1:c.A1396G:p.T466A"	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	0.901288011	1	0.9537319	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	84448102	12A2p6	cell line	sgMsh2	84448102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	190	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.A2008G:p.T670A	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999929	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	87480883	12A2p6	cell line	sgMsh2	87480883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	155	0	0	NA	exonic	Tdrd3	nonsynonymous SNV	"Tdrd3:NM_001253755:exon7:c.G717T:p.E239D,Tdrd3:NM_172605:exon7:c.G717T:p.E239D"	14qE1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999542	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	97831377	12A2p6	cell line	sgMsh2	97831377	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.314	47	0	0	NA	exonic	Dach1	frameshift insertion	"Dach1:NM_001038610:exon8:c.1765dupA:p.T589Nfs*51,Dach1:NM_007826:exon9:c.1921dupA:p.T641Nfs*51"	14qE2.1	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M1_p20	chr14	99089729	12A2p6	cell line	sgMsh2	99089729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	73	0	0	NA	exonic	Dis3	synonymous SNV	"Dis3:NM_001360051:exon8:c.T561C:p.A187A,Dis3:NM_028315:exon8:c.T1128C:p.A376A,Dis3:NM_001360050:exon9:c.T846C:p.A282A"	14qE2.2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9964482	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	99150684	12A2p6	cell line	sgMsh2	99150684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	183	0	0	NA	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon10:c.A1265G:p.N422S	14qE2.2	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999896	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	372	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	1.45E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	103155880	12A2p6	cell line	sgMsh2	103155880	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	209	0	0	NA	exonic	Mycbp2	stopgain	Mycbp2:NM_207215:exon58:c.G9244T:p.G3082X	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999974	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	142	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999086	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	62	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9936486	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	121	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997213	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr14	111679304	12A2p6	cell line	sgMsh2	111679304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	55	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.T434C:p.I145T,Slitrk5:NM_001378769:exon2:c.T359C:p.I120T,Slitrk5:NM_001378770:exon2:c.T359C:p.I120T,Slitrk5:NM_198865:exon2:c.T359C:p.I120T"	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.990816	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	189	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999925	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	20	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9438777	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.265	75	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9968049	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	257	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	123299159	12A2p6	cell line	sgMsh2	123299159	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	132	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon32:c.C3679A:p.L1227I	14qE5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	192	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	406	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	210	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999975	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M1_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	128	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9998078	ATG	synonymous	A	5	AAAAA	NA
M1_p20	chr15	6497091	12A2p6	cell line	sgMsh2	6497091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	218	0	0	NA	exonic	C9	nonsynonymous SNV	"C9:NM_013485:exon10:c.A1566G:p.I522M,C9:NM_001368421:exon11:c.A1440G:p.I480M"	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.952656758	1	0.9999624	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	202	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.905957897	1	0.9987639	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	181	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999885	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	169	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.649114163	2	0.9993542	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	100	0	0	NA	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9991507	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	150	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.817230062	1	0.796907	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	41	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	3	1	1	0.9808807	CTT	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr15	12458016	12A2p6	cell line	sgMsh2	12458016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon4:c.A760G:p.T254A	15qA1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999433	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	153	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.952656758	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	186	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999912	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	441	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9818514	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	350	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.929307328	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M1_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	161	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999667	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	104	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9993131	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M1_p20	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	79	0	0	NA	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.761191429	1	0.5507902	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	39784630	12A2p6	cell line	sgMsh2	39784630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	220	0	0	NA	exonic	Dpys	nonsynonymous SNV	"Dpys:NM_001164466:exon9:c.A1528G:p.T510A,Dpys:NM_022722:exon9:c.A1528G:p.T510A"	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.840579492	1	0.9398741	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	433	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	1.02E-09	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	47629296	12A2p6	cell line	sgMsh2	47629296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	257	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon59:c.C9448T:p.P3150S	15qB3.3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999998	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	210	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999975	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	48314092	12A2p6	cell line	sgMsh2	48314092	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	158	0	0	NA	exonic	Csmd3	frameshift deletion	Csmd3:NM_001081391:exon7:c.1049delT:p.L350Pfs*7	15qB3.3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M1_p20	chr15	52295937	12A2p6	cell line	sgMsh2	52295937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	248	0	0	NA	exonic	Slc30a8	nonsynonymous SNV	Slc30a8:NM_172816:exon1:c.T52C:p.Y18H	15qC	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.905957897	1	0.9995978	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	250	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999997	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	181	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999885	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	88	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9983952	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	123	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.863928923	1	0.9604207	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	57254212	12A2p6	cell line	sgMsh2	57254212	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	375	0	0	NA	exonic	Slc22a22	nonsynonymous SNV	"Slc22a22:NM_001357930:exon6:c.C932T:p.A311V,Slc22a22:NM_172378:exon7:c.C932T:p.A311V"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	1.39E-09	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	81	0	0	NA	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9976745	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	490	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	263	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999999	TGA	synonymous	NA	NA	NA	NA
M1_p20	chr15	66773377	12A2p6	cell line	sgMsh2	66773377	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	120	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon41:c.C7132T:p.R2378C	15qD2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997061	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	66912929	12A2p6	cell line	sgMsh2	66912929	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	100	0	0	NA	exonic	Ccn4	synonymous SNV	Ccn4:NM_018865:exon3:c.G450T:p.T150T	15qD2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9991507	CGG	synonymous	NA	NA	NA	NA
M1_p20	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	118	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9996732	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	144	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.96199653	1	0.9995643	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	96	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.873268695	1	0.9588659	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	76057563	12A2p6	cell line	sgMsh2	76057563	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	76	0	0	NA	exonic	Scrib	stopgain	"Scrib:NM_001310542:exon24:c.G3385T:p.G1129X,Scrib:NM_001310543:exon24:c.G3385T:p.G1129X,Scrib:NM_134089:exon24:c.G3385T:p.G1129X"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9969696	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	134	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9998602	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	204	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.929307328	1	0.9997242	GCG	synonymous	NA	NA	NA	NA
M1_p20	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	44	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.835909606	1	0.8694311	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	97	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.859259037	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	296	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.994685732	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	76	0	0	NA	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9969696	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr15	76715854	12A2p6	cell line	sgMsh2	76715854	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	147	0	0	NA	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon6:c.G1084T:p.A362S	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999299	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	240	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.952656758	1	0.9999839	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	304	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.821899948	1	0.8014721	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	0	0	NA	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9892472	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	125	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9997746	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr15	78443795	12A2p6	cell line	sgMsh2	78443795	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	18	0	0	NA	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon15:c.T1714G:p.S572A,Tmprss6:NM_027902:exon15:c.T1750G:p.S584A"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9379655	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	90	0	0	NA	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.966666416	1	0.9964055	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	102	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9992362	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	90	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9985566	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	80902708	12A2p6	cell line	sgMsh2	80902708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	383	0	0	NA	exonic	Tnrc6b	synonymous SNV	"Tnrc6b:NM_177124:exon14:c.T3939C:p.G1313G,Tnrc6b:NM_144812:exon17:c.T4047C:p.G1349G"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	1.25E-09	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	160	0	0	NA	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999649	TCG	synonymous	NA	NA	NA	NA
M1_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	194	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999942	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	174	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999833	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr15	82022506	12A2p6	cell line	sgMsh2	82022506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	97	0	0	NA	exonic	Xrcc6	nonsynonymous SNV	Xrcc6:NM_010247:exon4:c.T251C:p.V84A	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9990042	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	82346154	12A2p6	cell line	sgMsh2	82346154	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	43	0	0	NA	exonic	Smdt1	frameshift deletion	Smdt1:NM_026914:exon1:c.71delG:p.R26Gfs*35	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1_p20	chr15	82852575	12A2p6	cell line	sgMsh2	82852575	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.292	110	0	0	NA	exonic	Tcf20	frameshift insertion	"Tcf20:NM_001114140:exon2:c.4673_4674insA:p.K1559fs*0,Tcf20:NM_013836:exon2:c.4673_4674insA:p.K1559fs*0"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	NA	NA	TAG	frameshift	G	5	GGGGG	1
M1_p20	chr15	83101931	12A2p6	cell line	sgMsh2	83101931	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	112	0	0	NA	exonic	Serhl	nonsynonymous SNV	Serhl:NM_023475:exon3:c.G214T:p.G72C	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9995507	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	83500100	12A2p6	cell line	sgMsh2	83500100	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Ttll1	nonsynonymous SNV	"Ttll1:NM_001357953:exon6:c.T325G:p.F109V,Ttll1:NM_178869:exon6:c.T325G:p.F109V"	15qE1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997357	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	487	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.882608467	1	0.9999624	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	193	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999939	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	197	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999361	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr15	85537437	12A2p6	cell line	sgMsh2	85537437	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	45	0	0	NA	exonic	Wnt7b	synonymous SNV	"Wnt7b:NM_001163633:exon4:c.C801T:p.V267V,Wnt7b:NM_001163634:exon4:c.C1014T:p.V338V,Wnt7b:NM_009528:exon4:c.C1002T:p.V334V"	15qE2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9844822	TGA	synonymous	NA	NA	NA	NA
M1_p20	chr15	88864443	12A2p6	cell line	sgMsh2	88864443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	94	0	0	NA	exonic	Pim3	synonymous SNV	Pim3:NM_145478:exon5:c.T744C:p.D248D	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9988325	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	66	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9948577	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	472	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.952656758	1	3.04E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	89289947	12A2p6	cell line	sgMsh2	89289947	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	100	0	0	NA	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon36:c.C5049G:p.R1683R,Sbf1:NM_001170561:exon37:c.C5127G:p.R1709R"	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.817230062	1	0.817329	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr15	89300838	12A2p6	cell line	sgMsh2	89300838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	72	0	0	NA	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon24:c.A3081G:p.T1027T,Sbf1:NM_001170561:exon24:c.A3081G:p.T1027T"	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9962553	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	82	0	0	NA	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.789210745	1	0.6995542	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	258	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	212	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.765861315	2	0.8924186	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr15	96414863	12A2p6	cell line	sgMsh2	96414863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	129	0	0	NA	exonic	Scaf11	synonymous SNV	Scaf11:NM_028148:exon15:c.T4296C:p.V1432V	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.751851657	2	0.7593129	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr15	96432368	12A2p6	cell line	sgMsh2	96432368	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	265	0	0	NA	exonic	Scaf11	frameshift deletion	Scaf11:NM_028148:exon5:c.354delT:p.F118Lfs*20	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	30	0	0	NA	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.966226	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	116	0	0	NA	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9996366	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	187	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.947986872	1	0.9998374	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	70	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.933977214	1	0.983185	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	379	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	1.31E-09	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	98592787	12A2p6	cell line	sgMsh2	98592787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	260	0	0	NA	exonic	Adcy6	nonsynonymous SNV	"Adcy6:NM_001368413:exon20:c.G3261A:p.M1087I,Adcy6:NM_007405:exon21:c.G3267A:p.M1089I"	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999998	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	182	0	0	NA	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999891	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	99037439	12A2p6	cell line	sgMsh2	99037439	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.401	204	0	0	NA	exonic	Tuba1c	synonymous SNV	Tuba1c:NM_009448:exon4:c.A780G:p.V260V	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999966	TAC	synonymous	TACCC	11	TACCCTACCCT	NA
M1_p20	chr15	99470788	12A2p6	cell line	sgMsh2	99470788	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	116	0	0	NA	exonic	Bcdin3d	frameshift deletion	Bcdin3d:NM_029236:exon2:c.529delG:p.D177Tfs*62	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M1_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	227	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.966666416	1	0.9999899	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	101015952	12A2p6	cell line	sgMsh2	101015952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	278	0	0	NA	exonic	Scn8a	nonsynonymous SNV	"Scn8a:NM_011323:exon16:c.A3224G:p.Y1075C,Scn8a:NM_001077499:exon17:c.A3224G:p.Y1075C"	15qF1	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	101946618	12A2p6	cell line	sgMsh2	101946618	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.284	817	0	0	NA	exonic	Krt78	synonymous SNV	Krt78:NM_212487:exon9:c.C2757T:p.T919T	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	2	1	1	1	CGG	synonymous	NA	NA	NA	NA
M1_p20	chr15	102030976	12A2p6	cell line	sgMsh2	102030976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	168	0	0	NA	exonic	Krt18	nonsynonymous SNV	Krt18:NM_010664:exon5:c.A883G:p.T295A	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.495007923	2	0.9892601	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102086606	12A2p6	cell line	sgMsh2	102086606	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	155	0	0	NA	exonic	Eif4b	nonsynonymous SNV	Eif4b:NM_145625:exon6:c.C634G:p.P212A	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.602415303	2	0.9998473	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102094729	12A2p6	cell line	sgMsh2	102094729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	216	0	0	NA	exonic	Eif4b	nonsynonymous SNV	Eif4b:NM_145625:exon13:c.G1634A:p.R545H	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.947986872	1	0.9999448	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102106274	12A2p6	cell line	sgMsh2	102106274	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	79	0	0	NA	exonic	Tns2	nonsynonymous SNV	"Tns2:NM_001355636:exon4:c.G253T:p.A85S,Tns2:NM_153533:exon4:c.G253T:p.A85S"	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.639774391	2	0.938154	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102106818	12A2p6	cell line	sgMsh2	102106818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	341	0	0	NA	exonic	Tns2	synonymous SNV	"Tns2:NM_001355636:exon6:c.G330A:p.K110K,Tns2:NM_153533:exon6:c.G330A:p.K110K"	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.83123972	1	0.9106814	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr15	102107034	12A2p6	cell line	sgMsh2	102107034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	47	0	0	NA	exonic	Tns2	nonsynonymous SNV	"Tns2:NM_001355636:exon7:c.C370A:p.L124I,Tns2:NM_153533:exon7:c.C370A:p.L124I"	15qF2	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	1	1	0.9860236	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102340397	12A2p6	cell line	sgMsh2	102340397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	76	0	0	NA	exonic	Aaas	synonymous SNV	Aaas:NM_153416:exon8:c.T744C:p.T248T	15qF3	chr15-3279130-102454328	5	3	2	0.9	4.202897461	NA	1	0.859259037	1	0.9265697	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr15	102454336	12A2p6	cell line	sgMsh2	102454336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	43	0	0	NA	exonic	Amhr2	nonsynonymous SNV	"Amhr2:NM_144547:exon11:c.T1537C:p.F513L,Amhr2:NM_001356575:exon12:c.T1537C:p.F513L"	15qF3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	197	0	0	NA	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	310	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M1_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	195	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	313	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	4092284	12A2p6	cell line	sgMsh2	4092284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	96	0	0	NA	exonic	Crebbp	frameshift deletion	Crebbp:NM_001025432:exon27:c.4469delC:p.P1490Lfs*67	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	57	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M1_p20	chr16	4547364	12A2p6	cell line	sgMsh2	4547364	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.296	31	0	0	NA	exonic	Tfap4	nonsynonymous SNV	Tfap4:NM_031182:exon6:c.C713A:p.P238H	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	4611385	12A2p6	cell line	sgMsh2	4611385	C	-	Deletion	Strelka2;Vardict	2	0.1698	53	0	0	NA	exonic	Glis2	frameshift deletion	Glis2:NM_031184:exon4:c.451delC:p.K154Rfs*96	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TCC	frameshift	TCCT	16	CTTCCTCCTTCCTTCC	-1
M1_p20	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	30	0	0	NA	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	4684243	12A2p6	cell line	sgMsh2	4684243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	14	0	0	NA	exonic	Dnaja3	nonsynonymous SNV	"Dnaja3:NM_001135112:exon1:c.C110T:p.T37I,Dnaja3:NM_023646:exon1:c.C110T:p.T37I"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9243089	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	332	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.798550518	2	0.7313355	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	4835784	12A2p6	cell line	sgMsh2	4835784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	229	0	0	NA	exonic	4930562C15Rik	nonsynonymous SNV	4930562C15Rik:NM_030192:exon1:c.G196A:p.D66N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999991	AGA	nonsynonymous	AGGG	10	AGGGAGGGAG	NA
M1_p20	chr16	5011655	12A2p6	cell line	sgMsh2	5011655	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	71	0	0	NA	exonic	Rogdi	nonsynonymous SNV	Rogdi:NM_133185:exon5:c.T293C:p.L98S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9960519	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	30	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.966226	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9967206	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr16	8478019	12A2p6	cell line	sgMsh2	8478019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	128	0	0	NA	exonic	Mettl22	synonymous SNV	Mettl22:NM_146247:exon3:c.G171A:p.S57S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9892572	CGG	synonymous	G	5	GGGGG	NA
M1_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	64	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9942849	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	383	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	1.25E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	213	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999979	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	107	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.714492568	2	0.8666106	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	124	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	245	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	97	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.798550518	1	0.7218892	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	211	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9647586	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	208	0	0	NA	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999973	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M1_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	186	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999912	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	16436031	12A2p6	cell line	sgMsh2	16436031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	164	0	0	NA	exonic	Fgd4	nonsynonymous SNV	"Fgd4:NM_001301817:exon14:c.A2034G:p.I678M,Fgd4:NM_001301818:exon14:c.A1671G:p.I557M,Fgd4:NM_139232:exon14:c.A1671G:p.I557M"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999716	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	178	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9555293	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	16903428	12A2p6	cell line	sgMsh2	16903428	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	43	0	0	NA	exonic	Ppm1f	nonsynonymous SNV	Ppm1f:NM_176833:exon2:c.T40G:p.C14G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9735829	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	97	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990042	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	50	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.686473252	2	0.5897841	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	379	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.9156382	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9981249	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	88	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9983952	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	17807146	12A2p6	cell line	sgMsh2	17807146	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.499	7	0	0	NA	exonic	Scarf2	synonymous SNV	Scarf2:NM_153790:exon11:c.A2064G:p.K688K	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.8927065	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	84	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9980162	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	83	0	0	NA	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9979083	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	138	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.999887	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	199	0	0	NA	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999956	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	81	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.863928923	1	0.9371095	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	70	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9958375	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	110	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	277	0	0	NA	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9999988	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	30539470	12A2p6	cell line	sgMsh2	30539470	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	97	0	0	NA	exonic	Tmem44	synonymous SNV	"Tmem44:NM_001357414:exon7:c.C849T:p.A283A,Tmem44:NM_001361297:exon7:c.C549T:p.A183A,Tmem44:NM_001384248:exon7:c.C849T:p.A283A,Tmem44:NM_172614:exon7:c.C849T:p.A283A,Tmem44:NM_001357413:exon8:c.C549T:p.A183A,Tmem44:NM_001357415:exon8:c.C549T:p.A183A,Tmem44:NM_001384249:exon8:c.C549T:p.A183A,Tmem44:NM_001384250:exon8:c.C549T:p.A183A,Tmem44:NM_001384251:exon8:c.C549T:p.A183A,Tmem44:NM_001384252:exon8:c.C549T:p.A183A"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990042	TGG	synonymous	CT	8	CTCTCTCT	NA
M1_p20	chr16	31945207	12A2p6	cell line	sgMsh2	31945214	CTAGATTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	88	0	0	NA	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.1082_1089del:p.R362Dfs*57	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.779870973	NA	NA	GCT	frameshift	NA	NA	NA	-8
M1_p20	chr16	32043950	12A2p6	cell line	sgMsh2	32043950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	111	0	0	NA	exonic	Pak2	synonymous SNV	Pak2:NM_177326:exon4:c.A339G:p.K113K	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9929388	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	119	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996901	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	356	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	2.06E-09	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	32884200	12A2p6	cell line	sgMsh2	32884200	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Fyttd1	nonsynonymous SNV	"Fyttd1:NM_001159349:exon2:c.T180G:p.S60R,Fyttd1:NM_001356387:exon2:c.T180G:p.S60R,Fyttd1:NM_027226:exon2:c.T180G:p.S60R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9962553	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	181	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999885	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	33985216	12A2p6	cell line	sgMsh2	33985216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	182	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon57:c.A8004C:p.E2668D	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999891	TTT	nonsynonymous	TTCC	8	TTCCTTCC	NA
M1_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	115	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996168	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	197	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999951	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	289	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.9999999	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	178	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999865	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	48	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.751851657	1	0.6633196	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	43609614	12A2p6	cell line	sgMsh2	43609614	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	161	0	0	NA	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.C268T:p.L90L,Zbtb20:NM_019778:exon8:c.C487T:p.L163L,Zbtb20:NM_001285805:exon10:c.C487T:p.L163L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	495	0	0	NA	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	1.00E-09	TCT	synonymous	NA	NA	NA	NA
M1_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	229	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	46395206	12A2p6	cell line	sgMsh2	46395206	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	294	0	0	NA	exonic	Nectin3	nonsynonymous SNV	Nectin3:NM_021496:exon9:c.C1423T:p.R475C	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	2.96E-08	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	464	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	77	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9971258	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	159	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999629	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	52047375	12A2p6	cell line	sgMsh2	52047375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	239	0	0	NA	exonic	Cblb	nonsynonymous SNV	Cblb:NM_001033238:exon3:c.G345A:p.M115I	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.999997	TGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	255	0	0	NA	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	283	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	124	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9997624	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	341	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	3.36E-09	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	242	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	537	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	59361855	12A2p6	cell line	sgMsh2	59361855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	709	0	0	NA	exonic	Olfr207;Olfr209	nonsynonymous SNV	"Olfr207:NM_001011792:exon1:c.G362A:p.R121H,Olfr209:NM_207551:exon1:c.G362A:p.R121H"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.565056214	2	1	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	41	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.924637441	NA	NA	ATT	frameshift	NA	NA	NA	-1
M1_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.1964	56	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.917165624	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M1_p20	chr16	65839725	12A2p6	cell line	sgMsh2	65839725	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	73	0	0	NA	exonic	Vgll3	nonsynonymous SNV	"Vgll3:NM_001368760:exon3:c.T929G:p.F310C,Vgll3:NM_001368761:exon3:c.T761G:p.F254C,Vgll3:NM_028572:exon3:c.T926G:p.F309C"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.8898179	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	545	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	47	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.9828143	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr16	76294630	12A2p6	cell line	sgMsh2	76294630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	101	0	0	NA	exonic	Nrip1	nonsynonymous SNV	"Nrip1:NM_001358238:exon4:c.A38G:p.Q13R,Nrip1:NM_173440:exon4:c.A38G:p.Q13R"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9991946	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	123	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9987598	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.943316986	1	0.9964198	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	89897828	12A2p6	cell line	sgMsh2	89897828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	199	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.G740A:p.G247E,Tiam1:NM_009384:exon4:c.G740A:p.G247E"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999956	TCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	89898041	12A2p6	cell line	sgMsh2	89898041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	80	0	0	NA	exonic	Tiam1	stopgain	"Tiam1:NM_001145886:exon4:c.G527A:p.W176X,Tiam1:NM_009384:exon4:c.G527A:p.W176X"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9847889	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	236	0	0	NA	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999866	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	74	0	0	NA	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M1_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	256	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999998	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	272	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M1_p20	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	27	0	0	NA	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	1	1	0.960623	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	47	0	0	NA	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.621094847	2	0.7623686	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	113	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	2	1	1	0.9995739	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	157	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.202897461	NA	1	0.849919264	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Strelka2;Vardict	2	0.2254	71	0	0	NA	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
M1_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	471	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	242	0	0	NA	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999995	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	12890782	12A2p6	cell line	sgMsh2	12890782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	187	0	0	NA	exonic	Pnldc1	nonsynonymous SNV	Pnldc1:NM_001034866:exon16:c.T1196C:p.L399P	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	0.9998374	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	12947418	12A2p6	cell line	sgMsh2	12947418	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	317	0	0	NA	exonic	Acat2	synonymous SNV	Acat2:NM_009338:exon6:c.C696T:p.G232G	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	9.43E-09	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	1030	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.565056214	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	1349	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.593075531	2	1	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr17	13236400	12A2p6	cell line	sgMsh2	13236400	A	-	Deletion	Mutect2;Vardict	2	0.095	762	0	0	NA	exonic	Smok2b	frameshift deletion	Smok2b:NM_001167913:exon2:c.1446delA:p.K484delinsNKTQEGCQENEHPARPRRSPEDAGCYDSTVIVLESTHV	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.443639176	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	63	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.775201087	1	9.13E-07	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	143	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9922044	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	442	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	284	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	312	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.20E-08	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.216	517	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	423	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	1221	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.252	747	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	337	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.999926	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	390	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	1.02E-08	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	387	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	4.48E-09	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	337	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	3.91E-09	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	20993832	12A2p6	cell line	sgMsh2	20993833	GA	AT	DBS	Mutect2;Vardict	2	0.281	239	0	0	NA	exonic	Vmn1r233	nonframeshift substitution	Vmn1r233:NM_134202:exon1:c.854_855AT:p.F285Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	278	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	804	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	1.68E-08	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	204	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.583735758	2	0.999998	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	115	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996168	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24445156	12A2p6	cell line	sgMsh2	24445156	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	100	0	0	NA	exonic	E4f1	nonsynonymous SNV	"E4f1:NM_001301784:exon10:c.C1556A:p.P519H,E4f1:NM_001355708:exon10:c.C1076A:p.P359H,E4f1:NM_007893:exon10:c.C1553A:p.P518H"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9991507	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24500925	12A2p6	cell line	sgMsh2	24500925	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	68	0	0	NA	exonic	Caskin1	synonymous SNV	"Caskin1:NM_001360469:exon12:c.C1185T:p.A395A,Caskin1:NM_027937:exon12:c.C1185T:p.A395A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9953733	CCG	synonymous	G	5	GGGGG	NA
M1_p20	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	36	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.863928923	1	0.8983356	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	169	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999782	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	44	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9836498	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	104	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9993131	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M1_p20	chr17	25723268	12A2p6	cell line	sgMsh2	25723268	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	33	0	0	NA	exonic	Chtf18	synonymous SNV	Chtf18:NM_145409:exon12:c.C1506A:p.L502L	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9710553	GGA	synonymous	NA	NA	NA	NA
M1_p20	chr17	25937063	12A2p6	cell line	sgMsh2	25937063	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	0	0	NA	exonic	Pigq	nonsynonymous SNV	"Pigq:NM_001291025:exon2:c.C390A:p.F130L,Pigq:NM_001357592:exon2:c.C390A:p.F130L,Pigq:NM_011822:exon2:c.C390A:p.F130L"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988928	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	53	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9897976	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	94	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988325	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	206	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999969	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	105	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.518357354	2	0.993055	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	95	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.784540859	1	0.6375508	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	81	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9976745	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	159	0	0	NA	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	256	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28963315	12A2p6	cell line	sgMsh2	28963315	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	406	0	0	NA	exonic	Kctd20	nonsynonymous SNV	"Kctd20:NM_001356298:exon4:c.C575T:p.T192M,Kctd20:NM_001356299:exon4:c.C389T:p.T130M,Kctd20:NM_001356300:exon5:c.C602T:p.T201M,Kctd20:NM_025888:exon5:c.C602T:p.T201M"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.07E-09	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	28974308	12A2p6	cell line	sgMsh2	28974308	A	-	Deletion	Strelka2;Vardict	2	0.193	57	0	0	NA	exonic	Stk38	frameshift deletion	"Stk38:NM_001357173:exon12:c.1146delT:p.F382Lfs*41,Stk38:NM_134115:exon12:c.1146delT:p.F382Lfs*41"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.901288011	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	128	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998078	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	45	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9741377	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M1_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	208	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.868598809	1	0.9887059	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	177	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.803220404	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.117	149	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.54637667	2	0.9997678	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	85	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.996054	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	204	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999966	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M1_p20	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	102	0	0	NA	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9992208	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M1_p20	chr17	32537164	12A2p6	cell line	sgMsh2	32537164	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	113	0	0	NA	exonic	Cyp4f16	frameshift deletion	"Cyp4f16:NM_001356303:exon2:c.166delA:p.N58Tfs*8,Cyp4f16:NM_024442:exon2:c.166delA:p.N58Tfs*8"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	187	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999916	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	71	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9837214	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	33640763	12A2p6	cell line	sgMsh2	33640763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	36	0	0	NA	exonic	Pram1	synonymous SNV	Pram1:NM_001002842:exon2:c.A303G:p.E101E	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9752117	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr17	33665526	12A2p6	cell line	sgMsh2	33665526	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	537	0	0	NA	exonic	Hnrnpm	synonymous SNV	"Hnrnpm:NM_029804:exon7:c.T747G:p.T249T,Hnrnpm:NM_001109913:exon8:c.T630G:p.T210T"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	33913908	12A2p6	cell line	sgMsh2	33913908	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	101	0	0	NA	exonic	Daxx	frameshift deletion	"Daxx:NM_001199733:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_001355704:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_007829:exon7:c.2009delC:p.L673Wfs*21"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
M1_p20	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	40	0	0	NA	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9798591	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	16	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.931463	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	45	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9844822	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	131	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.714492568	2	0.9361969	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	135	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9907492	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	29	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.667793708	1	0.5887982	GAG	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	131	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998361	GCT	synonymous	G	5	GGGGG	NA
M1_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	33	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9710553	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	44	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9836498	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	252	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	85	0	0	NA	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.532367012	2	0.9912755	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	35023392	12A2p6	cell line	sgMsh2	35023392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon11:c.T1471C:p.F491L,Vwa7:NM_138582:exon11:c.T1534C:p.F512L"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	35153967	12A2p6	cell line	sgMsh2	35153967	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	109	0	0	NA	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon20:c.C4878A:p.P1626P,Prrc2a:NM_020027:exon20:c.C4878A:p.P1626P"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9994732	AGG	synonymous	TCCA	8	TCCATCCA	NA
M1_p20	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	94	0	0	NA	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988325	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr17	35516045	12A2p6	cell line	sgMsh2	35516045	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	37	0	0	NA	exonic	Tcf19	frameshift deletion	"Tcf19:NM_001163763:exon2:c.71delC:p.P24Rfs*72,Tcf19:NM_001163764:exon2:c.71delC:p.P24Rfs*72,Tcf19:NM_025674:exon2:c.71delC:p.P24Rfs*72"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.868598809	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1_p20	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	60	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9929421	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	71	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.821899948	1	0.8423181	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	55	0	0	NA	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.957067	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	135	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.621094847	2	0.9987262	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	211	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999977	GCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	178	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999865	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	37590155	12A2p6	cell line	sgMsh2	37590155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	1145	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.T197G:p.L66R	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	521	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	869	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M1_p20	chr17	37851530	12A2p6	cell line	sgMsh2	37851530	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	167	0	0	NA	exonic	Olfr126	frameshift deletion	Olfr126:NM_146890:exon1:c.937delA:p.K314Nfs*6	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.224	122	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M1_p20	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	353	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	2.25E-09	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	225	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	687	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.235	84	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9980162	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	44	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	519	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	57	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9917335	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	340	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	45589785	12A2p6	cell line	sgMsh2	45589785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	118	0	0	NA	exonic	Slc29a1	nonsynonymous SNV	"Slc29a1:NM_001376997:exon4:c.T254C:p.L85P,Slc29a1:NM_022880:exon4:c.T350C:p.L117P,Slc29a1:NM_001199114:exon5:c.T350C:p.L117P,Slc29a1:NM_001199115:exon5:c.T350C:p.L117P,Slc29a1:NM_001199116:exon5:c.T350C:p.L117P,Slc29a1:NM_001376987:exon5:c.T350C:p.L117P,Slc29a1:NM_001376988:exon5:c.T350C:p.L117P,Slc29a1:NM_001376998:exon5:c.T254C:p.L85P,Slc29a1:NM_001199113:exon6:c.T350C:p.L117P,Slc29a1:NM_001357771:exon6:c.T350C:p.L117P,Slc29a1:NM_001376989:exon6:c.T350C:p.L117P,Slc29a1:NM_001376990:exon6:c.T350C:p.L117P,Slc29a1:NM_001376991:exon6:c.T350C:p.L117P,Slc29a1:NM_001376992:exon6:c.T350C:p.L117P,Slc29a1:NM_001376993:exon6:c.T350C:p.L117P,Slc29a1:NM_001376994:exon6:c.T350C:p.L117P,Slc29a1:NM_001376995:exon6:c.T350C:p.L117P,Slc29a1:NM_001376996:exon6:c.T350C:p.L117P"	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	159	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.714	8	0	0	NA	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.8980053	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	91	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9986312	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	196	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999948	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	177	0	0	NA	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999857	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	24	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9541331	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	40	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9798591	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	56424157	12A2p6	cell line	sgMsh2	56424157	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	121	0	0	NA	exonic	Ptprs	frameshift deletion	"Ptprs:NM_001252453:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_001252455:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_001252456:exon12:c.2030delG:p.G677Afs*41,Ptprs:NM_011218:exon16:c.3248delG:p.G1083Afs*41"	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	130	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998272	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	322	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.929307328	1	0.9999933	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	147	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9996153	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	57004791	12A2p6	cell line	sgMsh2	57004791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	50	0	0	NA	exonic	Gtf2f1	nonsynonymous SNV	Gtf2f1:NM_133801:exon7:c.G711T:p.K237N	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9679911	CCT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	203	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.9999789	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	402	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.09E-09	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	64750835	12A2p6	cell line	sgMsh2	64750835	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	297	0	0	NA	exonic	Man2a1	nonsynonymous SNV	Man2a1:NM_008549:exon21:c.T3235G:p.F1079V	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	2.54E-08	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	194	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.798550518	1	0.536631	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	77	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9971258	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	65929790	12A2p6	cell line	sgMsh2	65929790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	95	0	0	NA	exonic	Twsg1	nonsynonymous SNV	Twsg1:NM_023053:exon4:c.A244G:p.S82G	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.9988928	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	14	0	0	NA	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9243089	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M1_p20	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	153	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9997001	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M1_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	354	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	2.18E-09	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	70844920	12A2p6	cell line	sgMsh2	70844920	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	203	0	0	NA	exonic	Tgif1	nonsynonymous SNV	"Tgif1:NM_001164077:exon2:c.A536T:p.D179V,Tgif1:NM_001164074:exon3:c.A536T:p.D179V,Tgif1:NM_001164075:exon3:c.A695T:p.D232V,Tgif1:NM_001164076:exon3:c.A536T:p.D179V,Tgif1:NM_009372:exon3:c.A596T:p.D199V"	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999964	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	71109754	12A2p6	cell line	sgMsh2	71109754	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	358	0	0	NA	exonic	Myom1	nonsynonymous SNV	"Myom1:NM_001083934:exon29:c.A3817T:p.I1273F,Myom1:NM_010867:exon30:c.A4111T:p.I1371F"	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	1.96E-09	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.375	9	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	2	1	1	0.09625087	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.276	17	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9347916	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	153	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9937078	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	74245063	12A2p6	cell line	sgMsh2	74245063	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	164	0	0	NA	exonic	Memo1	synonymous SNV	Memo1:NM_133771:exon4:c.T237C:p.P79P	17qE2	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999716	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	69	0	0	NA	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.8778986	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	0	0	NA	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.9943633	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	78935744	12A2p6	cell line	sgMsh2	78935744	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.259	114	0	0	NA	exonic	Cebpz	synonymous SNV	Cebpz:NM_001024806:exon2:c.A480G:p.K160K	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	CTT	synonymous	TCTT	9	TCTTTCTTT	NA
M1_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	258	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	320	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	8.19E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	339	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	3.62E-09	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M1_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999565	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	84672164	12A2p6	cell line	sgMsh2	84672164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	320	0	0	NA	exonic	Abcg5	nonsynonymous SNV	Abcg5:NM_031884:exon6:c.A767G:p.E256G	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	8.19E-09	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	32	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	1	1	0.969525	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr17	86136436	12A2p6	cell line	sgMsh2	86136436	-	T	Insertion	Strelka2;Vardict	2	0.2083	72	0	0	NA	exonic	Srbd1	frameshift insertion	Srbd1:NM_030133:exon4:c.360dupA:p.P121Tfs*11	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.972737268	NA	NA	GGT	frameshift	T	8	TTTTTTTT	1
M1_p20	chr17	86488208	12A2p6	cell line	sgMsh2	86488208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	217	0	0	NA	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon7:c.A872G:p.N291S	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.821899948	1	0.8175881	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9971246	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.31	34	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	9.50990066	6.50990066	3	0.9	4.202897461	NA	3	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M1_p20	chr17	87696538	12A2p6	cell line	sgMsh2	87696538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.038	254	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon8:c.T1320C:p.L440L	17qE4	chr17-87672302-87723786	9.50990066	6.50990066	3	0.9	4.202897461	NA	1	0.177455671	3	1	TTA	synonymous	NA	NA	NA	NA
M1_p20	chr17	87719442	12A2p6	cell line	sgMsh2	87719442	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	895	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon14:c.G2365A:p.A789T	17qE4	chr17-87672302-87723786	9.50990066	6.50990066	3	0.9	4.202897461	NA	1	0.565056214	2	1	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	212	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	3426897	12A2p6	cell line	sgMsh2	3426897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.T1526C:p.I509T,Cul2:NM_029402:exon15:c.T1526C:p.I509T"	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	66	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	295	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.835909606	1	0.9350071	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M1_p20	chr18	7268573	12A2p6	cell line	sgMsh2	7268573	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	40	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon9:c.T945C:p.T315T	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9798591	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	26	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9585642	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	11084349	12A2p6	cell line	sgMsh2	11084349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	178	0	0	NA	exonic	Gata6	nonsynonymous SNV	Gata6:NM_010258:exon7:c.A1637G:p.N546S	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.891948239	1	0.9952655	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	251	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	294	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.905957897	1	0.9998692	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	13846082	12A2p6	cell line	sgMsh2	13846082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	190	0	0	NA	exonic	Zfp521	synonymous SNV	"Zfp521:NM_001360804:exon4:c.T1273C:p.L425L,Zfp521:NM_145492:exon4:c.T1273C:p.L425L"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999929	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	199	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	2	1	1	0.9999956	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	20601741	12A2p6	cell line	sgMsh2	20601741	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	172	0	0	NA	exonic	Dsg2	synonymous SNV	Dsg2:NM_007883:exon15:c.A2775G:p.V925V	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.910627783	1	0.9979882	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr18	21148335	12A2p6	cell line	sgMsh2	21148335	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	175	0	0	NA	exonic	Garem1	synonymous SNV	Garem1:NM_001033445:exon4:c.A963C:p.T321T	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.214814759	3	1.23E-09	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	252	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	66	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9948577	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.178	22	0	0	NA	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.83123972	1	0.8576289	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	71	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9960519	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	80	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.997548	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	151	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.943316986	1	0.9992303	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	29	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9644496	TAC	synonymous	T	5	TTTTT	NA
M1_p20	chr18	35179903	12A2p6	cell line	sgMsh2	35179903	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	66	0	0	NA	exonic	Ctnna1	synonymous SNV	Ctnna1:NM_009818:exon6:c.G807A:p.Q269Q	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.798550518	1	0.7706136	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	97	0	0	NA	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.658453936	2	0.9604135	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr18	36691444	12A2p6	cell line	sgMsh2	36691444	G	-	Deletion	Mutect2;Vardict	2	0.221	30	0	0	NA	exonic	E230025N22Rik	frameshift deletion	E230025N22Rik:NM_172831:exon6:c.463delC:p.R155Efs*4	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1_p20	chr18	36770182	12A2p6	cell line	sgMsh2	36770182	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.376	75	0	0	NA	exonic	Hars	frameshift deletion	Hars:NM_008214:exon10:c.1094delG:p.G365Afs*28	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1_p20	chr18	36961044	12A2p6	cell line	sgMsh2	36961044	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	158	0	0	NA	exonic	Pcdha5	nonsynonymous SNV	Pcdha5:NM_009959:exon1:c.G605A:p.R202K	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.859259037	1	0.9667701	AGA	nonsynonymous	TAGA	8	TAGATAGA	NA
M1_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	335	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	4.24E-09	ATT	synonymous	ATT	9	ATTATTATT	NA
M1_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.281	47	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9860236	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	256	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.952656758	1	0.9999914	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	37402840	12A2p6	cell line	sgMsh2	37402840	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	388	0	0	NA	exonic	Pcdhb9	nonsynonymous SNV	Pcdhb9:NM_053134:exon1:c.G1886A:p.R629H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	1.19E-09	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	51	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9886675	ATT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr18	37474704	12A2p6	cell line	sgMsh2	37474704	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	275	0	0	NA	exonic	Pcdhb15	frameshift deletion	Pcdhb15:NM_053140:exon1:c.988delA:p.K330Nfs*5	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	103	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9992757	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	260	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	2	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	373	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	1.43E-09	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9644496	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	135	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998675	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	38283868	12A2p6	cell line	sgMsh2	38283868	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	55	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.T203A:p.I68N	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.990816	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	159	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999629	GTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	126	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997863	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	42731875	12A2p6	cell line	sgMsh2	42731875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	55	0	0	NA	exonic	Ppp2r2b	nonsynonymous SNV	"Ppp2r2b:NM_027531:exon4:c.T359C:p.V120A,Ppp2r2b:NM_028392:exon4:c.T368C:p.V123A"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.990816	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	242	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	44275599	12A2p6	cell line	sgMsh2	44275599	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	247	0	0	NA	exonic	Npy6r	frameshift deletion	Npy6r:NM_010935:exon2:c.86delA:p.Q29Hfs*4	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1_p20	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	113	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.639774391	2	0.9905163	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	45559416	12A2p6	cell line	sgMsh2	45559416	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	55	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	Kcnn2:NM_001312905:exon4:c.G88T:p.A30S	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.990816	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	211	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.742511885	2	0.9733865	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr18	46505455	12A2p6	cell line	sgMsh2	46505455	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	107	0	0	NA	exonic	Fem1c	nonsynonymous SNV	Fem1c:NM_173423:exon3:c.T1479A:p.N493K	18qC	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.980676074	1	0.9989003	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	357	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	2.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	46720388	12A2p6	cell line	sgMsh2	46720388	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	201	0	0	NA	exonic	Cdo1	nonsynonymous SNV	Cdo1:NM_033037:exon3:c.A302C:p.N101T	18qC	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.896618125	1	0.9977573	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	47248622	12A2p6	cell line	sgMsh2	47248622	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	39	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.A2692T:p.S898C,Sema6a:NM_018744:exon19:c.A2857T:p.S953C"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9787842	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	169	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999782	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	36	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9752117	CGA	synonymous	NA	NA	NA	NA
M1_p20	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	112	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9995507	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	85	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	0.999355619	1	0.998087	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	139	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998928	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	112	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9995507	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	63121323	12A2p6	cell line	sgMsh2	63121323	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	136	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon9:c.A1100C:p.K367T	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998743	CTT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M1_p20	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	200	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999958	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	92	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9987019	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	56	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9912867	TTT	synonymous	NA	NA	NA	NA
M1_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	207	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999971	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9994142	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	34	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9725109	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9981186	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	80408645	12A2p6	cell line	sgMsh2	80408645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	35	0	0	NA	exonic	Ctdp1	nonsynonymous SNV	Ctdp1:NM_026295:exon13:c.A2878G:p.M960V	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9738953	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	124	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997624	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	176	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.202897461	NA	1	1	1	0.999985	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	346	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	3628338	12A2p6	cell line	sgMsh2	3628338	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	276	0	0	NA	exonic	Lrp5	stopgain	Lrp5:NM_008513:exon7:c.G1516T:p.G506X	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	90	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.768	81	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	100	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	108	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	26	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M1_p20	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	275	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	484	0	0	NA	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	247	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr19	4891072	12A2p6	cell line	sgMsh2	4891072	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	123	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon16:c.C1613T:p.P538L	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	163	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5288395	12A2p6	cell line	sgMsh2	5288395	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	47	0	0	NA	exonic	Sf3b2	nonsynonymous SNV	"Sf3b2:NM_001362454:exon6:c.C632A:p.P211H,Sf3b2:NM_030109:exon6:c.C635A:p.P212H"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5496127	12A2p6	cell line	sgMsh2	5496127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	87	0	0	NA	exonic	Snx32	nonsynonymous SNV	"Snx32:NM_001024560:exon11:c.C1006T:p.R336W,Snx32:NM_001362042:exon11:c.C1006T:p.R336W"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	226	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	31	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	46	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M1_p20	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	57	0	0	NA	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5892407	12A2p6	cell line	sgMsh2	5892407	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	129	0	0	NA	exonic	Tigd3	nonsynonymous SNV	"Tigd3:NM_001362045:exon2:c.C694T:p.P232S,Tigd3:NM_198634:exon2:c.C694T:p.P232S"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5903752	12A2p6	cell line	sgMsh2	5903752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	135	0	0	NA	exonic	Dpf2	nonsynonymous SNV	Dpf2:NM_001291078:exon7:c.A658G:p.T220A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	50	0	0	NA	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	57	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.373	12	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9164267	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	71	0	0	NA	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.826569834	1	0.8552837	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	110	0	0	NA	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9661483	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	77	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.877938581	1	0.9518381	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	8750017	12A2p6	cell line	sgMsh2	8750017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	306	0	0	NA	exonic	Stx5a	nonsynonymous SNV	"Stx5a:NM_019829:exon9:c.A898G:p.T300A,Stx5a:NM_001167799:exon10:c.A898G:p.T300A"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.625764733	2	4.66E-08	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	667	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	58	0	0	NA	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	82	0	0	NA	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.966666416	1	0.9949399	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	8895643	12A2p6	cell line	sgMsh2	8895643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	95	0	0	NA	exonic	Ints5	nonsynonymous SNV	Ints5:NM_176843:exon2:c.G965A:p.G322E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.840579492	1	0.8991414	GGG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.891948239	1	0.9605236	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.24	37	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9764633	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	375	0	0	NA	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.649114163	2	1.08E-08	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	296	0	0	NA	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.747181771	2	0.9952142	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	10656684	12A2p6	cell line	sgMsh2	10656684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	210	0	0	NA	exonic	Vwce	synonymous SNV	Vwce:NM_027913:exon15:c.G1836A:p.Q612Q	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.905957897	1	0.9989831	AGT	synonymous	NA	NA	NA	NA
M1_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	235	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.775201087	2	0.8661274	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	197	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999951	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr19	11526701	12A2p6	cell line	sgMsh2	11526701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	179	0	0	NA	exonic	Ms4a6b	nonsynonymous SNV	Ms4a6b:NM_027209:exon5:c.T341C:p.V114A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	0.9999888	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	12861870	12A2p6	cell line	sgMsh2	12861870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	261	0	0	NA	exonic	Olfr1444	nonsynonymous SNV	Olfr1444:NM_146702:exon1:c.T94G:p.F32V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999998	ATT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	814	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.70048291	2	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	713	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.67713348	2	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr19	12954304	12A2p6	cell line	sgMsh2	12954304	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	639	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.C714A:p.S238S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.649114163	2	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	438	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.672463594	NA	NA	CTA	frameshift	NA	NA	NA	-1
M1_p20	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	927	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.803220404	2	0.9903608	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M1_p20	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	935	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.990015846	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	13530453	12A2p6	cell line	sgMsh2	13530453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	1271	0	0	NA	exonic	Olfr1480	nonsynonymous SNV	Olfr1480:NM_207575:exon1:c.A779G:p.Q260R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.719162454	2	1	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	331	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.9386471	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	558	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.849919264	1	0.9971473	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	13795252	12A2p6	cell line	sgMsh2	13795252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	455	0	0	NA	exonic	Olfr1497	nonsynonymous SNV	Olfr1497:NM_146741:exon1:c.T358C:p.Y120H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	13828335	12A2p6	cell line	sgMsh2	13828335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	111	0	0	NA	exonic	Olfr1500	synonymous SNV	Olfr1500:NM_001011831:exon1:c.T60C:p.H20H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.812560176	1	0.7877552	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr19	13919308	12A2p6	cell line	sgMsh2	13919308	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	577	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.G287A:p.R96H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.742511885	2	0.9999975	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	309	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.663123822	2	0.9999987	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	437	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.882608467	1	0.9999107	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	337	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.625764733	2	7.88E-09	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9921576	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	22771972	12A2p6	cell line	sgMsh2	22771972	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.399	26	0	0	NA	exonic	Trpm3	synonymous SNV	"Trpm3:NM_001035245:exon8:c.A704G:p.X235X,Trpm3:NM_001362512:exon9:c.A779G:p.X260X"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	3	1	1	0.9585642	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr19	23705761	12A2p6	cell line	sgMsh2	23705761	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	292	0	0	NA	exonic	Ptar1	frameshift deletion	Ptar1:NM_028208:exon4:c.378delA:p.K127Nfs*3	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.798550518	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr19	24096635	12A2p6	cell line	sgMsh2	24096635	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	174	0	0	NA	exonic	Tjp2	nonsynonymous SNV	"Tjp2:NM_001198985:exon22:c.C3356T:p.A1119V,Tjp2:NM_001360391:exon22:c.C3368T:p.A1123V,Tjp2:NM_001360392:exon22:c.C3176T:p.A1059V,Tjp2:NM_011597:exon22:c.C3287T:p.A1096V,Tjp2:NM_001376368:exon23:c.C3287T:p.A1096V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.821899948	1	0.82517	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	24476650	12A2p6	cell line	sgMsh2	24476650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	187	0	0	NA	exonic	Fam122a	nonsynonymous SNV	Fam122a:NM_026520:exon1:c.T707C:p.V236A	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.835909606	1	0.9117203	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	25155898	12A2p6	cell line	sgMsh2	25155898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	145	0	0	NA	exonic	Dock8	synonymous SNV	Dock8:NM_028785:exon28:c.C3408T:p.C1136C	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999221	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr19	25430990	12A2p6	cell line	sgMsh2	25430990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	172	0	0	NA	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon11:c.G3586A:p.A1196T,Kank1:NM_181404:exon12:c.G3832A:p.A1278T"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.67713348	2	0.9976164	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	360	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.737841999	2	0.9996283	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr19	29331951	12A2p6	cell line	sgMsh2	29331952	TG	AA	DBS	Mutect2;Vardict	2	0.14	376	0	0	NA	exonic	Rln1	nonframeshift substitution	Rln1:NM_011272:exon2:c.426_427TT:p.S143C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.65378405	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	373	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	1.43E-09	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	125	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.957326644	1	0.9988553	TCG	synonymous	NA	NA	NA	NA
M1_p20	chr19	31083835	12A2p6	cell line	sgMsh2	31083835	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	155	0	0	NA	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.C770A:p.P257H	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999542	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	95	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.663123822	2	0.9503389	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	787	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.798550518	2	0.9917325	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	179	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.817230062	1	0.7843047	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	744	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.70048291	2	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	570	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	540	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.733172113	2	0.9999986	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	162	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.737841999	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M1_p20	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	99	0	0	NA	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.798550518	1	0.7185361	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	116	0	0	NA	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996366	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr19	36852863	12A2p6	cell line	sgMsh2	36852863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	443	0	0	NA	exonic	Tnks2	nonsynonymous SNV	Tnks2:NM_001163635:exon6:c.A695G:p.H232R	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.593075531	2	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	123	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9997494	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	421	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	38097545	12A2p6	cell line	sgMsh2	38097545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	26	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T419C:p.I140T	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9585642	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	38157525	12A2p6	cell line	sgMsh2	38157525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	992	0	0	NA	exonic	Pde6c	synonymous SNV	"Pde6c:NM_001170959:exon9:c.T1260C:p.H420H,Pde6c:NM_033614:exon9:c.T1260C:p.H420H"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.695813024	2	1	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	369	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	1.53E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	353	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.672463594	2	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	39851197	12A2p6	cell line	sgMsh2	39851197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	789	0	0	NA	exonic	Cyp2c69	synonymous SNV	Cyp2c69:NM_001104525:exon7:c.T981C:p.I327I	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.686473252	2	1.00E-09	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	134	0	0	NA	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.663123822	2	0.9925075	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	459	0	0	NA	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.672463594	2	3.78E-09	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	298	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	2.41E-08	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.261	32	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.969525	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	42033786	12A2p6	cell line	sgMsh2	42033786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	77	0	0	NA	exonic	Ubtd1	nonsynonymous SNV	Ubtd1:NM_145500:exon3:c.A496G:p.S166G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.775201087	1	0.6392587	CAG	nonsynonymous	GCCT	9	GCCTGCCTG	NA
M1_p20	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	56	0	0	NA	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9912867	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.971336302	1	0.9952916	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	32	0	0	NA	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.80789029	1	0.8299812	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	648	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.597745417	2	1	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	118	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996732	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	117	0	0	NA	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.943316986	1	0.9974037	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	69	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9956115	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	59	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.849919264	1	0.8997073	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	84	0	0	NA	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9980162	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	164	0	0	NA	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.588405645	2	0.9999567	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	438	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.845249378	1	0.9872862	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	126	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9997863	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	47397847	12A2p6	cell line	sgMsh2	47397847	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	81	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon3:c.T198G:p.D66E,Sh3pxd2a:NM_008018:exon3:c.T198G:p.D66E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.457648835	2	0.8436155	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	429	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.70048291	2	0.9999996	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	134	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9998602	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	48029153	12A2p6	cell line	sgMsh2	48029153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	437	0	0	NA	exonic	Cfap58	synonymous SNV	Cfap58:NM_001163267:exon17:c.T2451C:p.N817N	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9996902	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	369	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.924637441	1	0.9999974	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr19	50175145	12A2p6	cell line	sgMsh2	50175145	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	99	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon23:c.G3070A:p.V1024M,Sorcs1:NM_001290356:exon23:c.G3070A:p.V1024M,Sorcs1:NM_001360457:exon23:c.G3070A:p.V1024M,Sorcs1:NM_021377:exon23:c.G3070A:p.V1024M"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.789210745	1	0.6582099	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	50222155	12A2p6	cell line	sgMsh2	50222155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	413	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon17:c.C2271T:p.C757C,Sorcs1:NM_001290356:exon17:c.C2271T:p.C757C,Sorcs1:NM_001360457:exon17:c.C2271T:p.C757C,Sorcs1:NM_021377:exon17:c.C2271T:p.C757C"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.747181771	2	0.9997093	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr19	53618785	12A2p6	cell line	sgMsh2	53618785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	88	0	0	NA	exonic	Smc3	nonsynonymous SNV	Smc3:NM_007790:exon7:c.T365C:p.M122T	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9983952	ATG	nonsynonymous	TGATG	10	TGATGTGATG	NA
M1_p20	chr19	53909279	12A2p6	cell line	sgMsh2	53909279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	116	0	0	NA	exonic	Pdcd4	nonsynonymous SNV	"Pdcd4:NM_001168491:exon3:c.T211C:p.S71P,Pdcd4:NM_001168492:exon3:c.T211C:p.S71P,Pdcd4:NM_011050:exon3:c.T211C:p.S71P"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996366	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	252	0	0	NA	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.728502227	2	0.9967219	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	222	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.737841999	2	0.985151	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	129	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.443639176	2	0.5921038	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	302	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.770531201	2	0.9654928	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	59315342	12A2p6	cell line	sgMsh2	59315342	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	351	0	0	NA	exonic	Pdzd8	synonymous SNV	Pdzd8:NM_001033222:exon3:c.C1011A:p.S337S	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.742511885	2	0.9992204	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	305	0	0	NA	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.793880632	2	0.7704719	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Strelka2;Vardict	2	0.1268	71	0	0	NA	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.592141553	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M1_p20	chr19	60779422	12A2p6	cell line	sgMsh2	60779422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	396	0	0	NA	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon5:c.A677G:p.Q226R	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.499677809	2	0.9998209	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	382	0	0	NA	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	1.10E-09	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M1_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	180	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9992406	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	4905559	12A2p6	cell line	sgMsh2	4905559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	123	0	0	NA	exonic	Sephs1	nonsynonymous SNV	"Sephs1:NM_001362709:exon7:c.A731G:p.K244R,Sephs1:NM_001362710:exon7:c.A629G:p.K210R,Sephs1:NM_001362707:exon8:c.A839G:p.K280R,Sephs1:NM_001362708:exon8:c.A839G:p.K280R,Sephs1:NM_175400:exon8:c.A839G:p.K280R"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997494	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	130	0	0	NA	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998272	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	5979843	12A2p6	cell line	sgMsh2	5979843	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	284	0	0	NA	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon6:c.T1568C:p.L523S	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	4.96E-08	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	289	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.999902	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	472	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	84	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.65378405	2	0.9336939	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	21212697	12A2p6	cell line	sgMsh2	21212697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	194	0	0	NA	exonic	Thnsl1	nonsynonymous SNV	Thnsl1:NM_177588:exon3:c.A1261G:p.I421V	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999942	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	75	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9968049	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	196	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999948	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	22946731	12A2p6	cell line	sgMsh2	22946731	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	35	0	0	NA	exonic	Abi1	nonsynonymous SNV	"Abi1:NM_001377513:exon6:c.C332A:p.P111H,Abi1:NM_001077193:exon7:c.C836A:p.P279H,Abi1:NM_001377511:exon7:c.C473A:p.P158H,Abi1:NM_001377512:exon7:c.C464A:p.P155H,Abi1:NM_001077192:exon8:c.C1010A:p.P337H,Abi1:NM_001377510:exon8:c.C1013A:p.P338H,Abi1:NM_001331044:exon9:c.C1028A:p.P343H,Abi1:NM_001331045:exon9:c.C1025A:p.P342H,Abi1:NM_007380:exon9:c.C1097A:p.P366H,Abi1:NM_145994:exon9:c.C1100A:p.P367H,Abi1:NM_001077190:exon10:c.C1115A:p.P372H,Abi1:NM_001331043:exon10:c.C1112A:p.P371H"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9738953	AGG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr2	23155778	12A2p6	cell line	sgMsh2	23155778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	236	0	0	NA	exonic	Mastl	synonymous SNV	Mastl:NM_025979:exon1:c.A84G:p.P28P	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.779870973	2	0.8244219	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	24159749	12A2p6	cell line	sgMsh2	24159749	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	101	0	0	NA	exonic	Il1f8	nonsynonymous SNV	Il1f8:NM_027163:exon5:c.G371T:p.R124I	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9991946	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9974019	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	93	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987689	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	112	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.9889738	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	24963493	12A2p6	cell line	sgMsh2	24963493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	118	0	0	NA	exonic	Dph7	nonsynonymous SNV	Dph7:NM_026044:exon3:c.T319G:p.L107V	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	69	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9927513	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25285324	12A2p6	cell line	sgMsh2	25285324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	106	0	0	NA	exonic	Anapc2	nonsynonymous SNV	Anapc2:NM_175300:exon13:c.T2375C:p.L792P	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.80789029	1	0.765089	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25318882	12A2p6	cell line	sgMsh2	25318882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	41	0	0	NA	exonic	Grin1	nonsynonymous SNV	"Grin1:NM_001177656:exon1:c.G5A:p.S2N,Grin1:NM_001177657:exon1:c.G5A:p.S2N,Grin1:NM_001372558:exon1:c.G5A:p.S2N,Grin1:NM_001372559:exon1:c.G5A:p.S2N,Grin1:NM_001372560:exon1:c.G5A:p.S2N,Grin1:NM_001372561:exon1:c.G5A:p.S2N,Grin1:NM_001372562:exon1:c.G5A:p.S2N,Grin1:NM_008169:exon1:c.G5A:p.S2N"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9808807	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	41	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9808807	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25446007	12A2p6	cell line	sgMsh2	25446007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	106	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon41:c.G6391T:p.G2131C,Abca2:NM_007379:exon41:c.G6388T:p.G2130C"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9993823	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	41	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9808807	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25587510	12A2p6	cell line	sgMsh2	25587510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	84	0	0	NA	exonic	Rabl6	synonymous SNV	Rabl6:NM_001024616:exon9:c.A927G:p.T309T	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9319256	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	169	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.803220404	1	0.6446013	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	25900284	12A2p6	cell line	sgMsh2	25900284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	96	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon13:c.G1300A:p.A434T,Kcnt1:NM_001145403:exon14:c.G1282A:p.A428T,Kcnt1:NM_175462:exon14:c.G1342A:p.A448T"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.99895	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	26460071	12A2p6	cell line	sgMsh2	26460071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	112	0	0	NA	exonic	Notch1	synonymous SNV	Notch1:NM_008714:exon34:c.T7056C:p.I2352I	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995507	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr2	27268189	12A2p6	cell line	sgMsh2	27268189	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	20	0	0	NA	exonic	Vav2	nonsynonymous SNV	Vav2:NM_009500:exon26:c.G2366T:p.S789I	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9438777	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	140	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998984	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	356	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	2.06E-09	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.174	34	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.812560176	1	0.8352165	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.197	101	0	0	NA	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9906139	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M1_p20	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	59	0	0	NA	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9925601	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	30107639	12A2p6	cell line	sgMsh2	30107639	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	115	0	0	NA	exonic	Zer1	synonymous SNV	"Zer1:NM_001290503:exon8:c.G1215A:p.K405K,Zer1:NM_178694:exon8:c.G1254A:p.K418K"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996168	ACT	synonymous	NA	NA	NA	NA
M1_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9962553	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	52	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9892472	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	30341822	12A2p6	cell line	sgMsh2	30341822	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	150	0	0	NA	exonic	Nup188	nonsynonymous SNV	Nup188:NM_198304:exon38:c.A4427C:p.D1476A	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.882608467	1	0.9873424	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	322	0	0	NA	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	7.46E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	69	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.992009	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	31457994	12A2p6	cell line	sgMsh2	31457994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	38	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon95:c.A14576G:p.N4859S	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9776532	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	194	0	0	NA	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.85458915	1	0.9695594	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	32304867	12A2p6	cell line	sgMsh2	32304867	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.199	19	0	0	NA	exonic	Golga2	synonymous SNV	"Golga2:NM_001362698:exon17:c.G1812A:p.L604L,Golga2:NM_001362696:exon18:c.G1908A:p.L636L,Golga2:NM_001362697:exon18:c.G1893A:p.L631L,Golga2:NM_001080968:exon19:c.G1989A:p.L663L,Golga2:NM_001362695:exon19:c.G1989A:p.L663L,Golga2:NM_133852:exon20:c.G2070A:p.L690L"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.929307328	1	0.913672	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	208	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999973	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	78	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9972741	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	121	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9997146	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	55	0	0	NA	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.990816	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	66	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9948577	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	32710556	12A2p6	cell line	sgMsh2	32710556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	247	0	0	NA	exonic	Cdk9	synonymous SNV	Cdk9:NM_130860:exon3:c.A186G:p.T62T	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9991676	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	32747032	12A2p6	cell line	sgMsh2	32747032	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	333	0	0	NA	exonic	Sh2d3c	nonsynonymous SNV	"Sh2d3c:NM_001252547:exon5:c.C679T:p.P227S,Sh2d3c:NM_013781:exon6:c.C1135T:p.P379S"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	4.60E-09	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	252	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.817230062	1	0.7501215	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	42	0	0	NA	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9818514	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	69	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9956115	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M1_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	116	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.728502227	2	0.8430898	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	36640083	12A2p6	cell line	sgMsh2	36640083	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	521	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.C43A:p.L15M	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	36688308	12A2p6	cell line	sgMsh2	36688308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	376	0	0	NA	exonic	Olfr346	nonsynonymous SNV	Olfr346:NM_146938:exon1:c.A305G:p.Y102C	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	1.37E-09	TAT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	184	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.761191429	2	0.8659526	AAC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr2	39204849	12A2p6	cell line	sgMsh2	39204849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	221	0	0	NA	exonic	Ppp6c	nonsynonymous SNV	Ppp6c:NM_024209:exon4:c.G363T:p.Q121H	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	186	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999912	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Vardict	2	0.169	218	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.789210745	NA	NA	AAT	frameshift	T	5	TTTTT	1
M1_p20	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	272	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M1_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	66	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9948577	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	98	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990557	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.216	160	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	52	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	132	0	0	NA	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998446	AAA	synonymous	A	5	AAAAA	NA
M1_p20	chr2	52116707	12A2p6	cell line	sgMsh2	52116707	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	96	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon32:c.T6652C:p.S2218P,Rif1:NM_001355415:exon32:c.T6631C:p.S2211P,Rif1:NM_175238:exon32:c.T6652C:p.S2218P"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.452978949	2	8.41E-05	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	52258109	12A2p6	cell line	sgMsh2	52258109	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.201	242	0	0	NA	exonic	Neb	frameshift insertion	Neb:NM_010889:exon58:c.8123dupA:p.N2708Kfs*1	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.9386471	NA	NA	TAT	frameshift	T	5	TTTTT	1
M1_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	298	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	2.41E-08	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	58014983	12A2p6	cell line	sgMsh2	58014983	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	120	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon2:c.G1557T:p.K519N	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.85458915	1	0.9433505	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	42	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	2	1	1	0.9818514	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	181	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999885	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	76	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.8801828	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	60534818	12A2p6	cell line	sgMsh2	60534818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	378	0	0	NA	exonic	Pla2r1	nonsynonymous SNV	Pla2r1:NM_008867:exon2:c.T407C:p.V136A	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	1.33E-09	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	396	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	1.13E-09	ACT	synonymous	NA	NA	NA	NA
M1_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	121	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M1_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	220	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999985	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.155	170	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.723832341	2	0.9714152	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.154	171	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.719162454	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M1_p20	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	191	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999932	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	354	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M1_p20	chr2	67515274	12A2p6	cell line	sgMsh2	67515274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	120	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7858G:p.T2620A,Xirp2:NM_001083919:exon7:c.A7858G:p.T2620A"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997061	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	367	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	1.59E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	332	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	4.80E-09	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	72946658	12A2p6	cell line	sgMsh2	72946658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	190	0	0	NA	exonic	Sp3	nonsynonymous SNV	"Sp3:NM_001098425:exon3:c.A1525G:p.T509A,Sp3:NM_001018042:exon5:c.A1726G:p.T576A"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999929	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	98	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	0.9987279	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	135	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998675	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76744385	12A2p6	cell line	sgMsh2	76744385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	322	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A51182G:p.N17061S,Ttn:NM_011652:exon275:c.A70925G:p.N23642S,Ttn:NM_001385708:exon312:c.A76757G:p.N25586S"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	1	1	7.46E-09	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76757205	12A2p6	cell line	sgMsh2	76757205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	234	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon145:c.A39562G:p.T13188A,Ttn:NM_011652:exon266:c.A59305G:p.T19769A,Ttn:NM_001385708:exon303:c.A65137G:p.T21713A"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.9992102	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76796437	12A2p6	cell line	sgMsh2	76796437	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	143	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon79:c.A19481C:p.E6494A,Ttn:NM_011652:exon200:c.A39224C:p.E13075A,Ttn:NM_001385708:exon237:c.A45056C:p.E15019A"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.202897461	NA	1	0.761191429	2	0.7422213	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76894348	12A2p6	cell line	sgMsh2	76894348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	124	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon66:c.A16319G:p.K5440R,Ttn:NM_001385708:exon68:c.A19376G:p.K6459R"	2qC3	chr2-76867311-80657640	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76908791	12A2p6	cell line	sgMsh2	76908791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	94	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon45:c.G11403T:p.K3801N,Ttn:NM_001385708:exon47:c.G11916T:p.K3972N"	2qC3	chr2-76867311-80657640	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988325	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	259	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-80657640	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	257	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-76867311-80657640	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	102	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-80658020-85140177	5	3	2	0.9	4.202897461	NA	1	0.602415303	2	0.9943747	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	1071	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-80658020-85140177	5	3	2	0.9	4.202897461	NA	1	0.891948239	1	1.07E-09	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M1_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	371	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-80658020-85140177	5	3	2	0.9	4.202897461	NA	1	0.551046556	2	9.04E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	277	0	0	NA	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-80658020-85140177	5	3	2	0.9	4.202897461	NA	1	0.821899948	1	0.8065853	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.70048291	2	0.9999961	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	539	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.67713348	2	1.14E-09	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	480	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.672463594	2	2.04E-09	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	266	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.602415303	2	0.9999999	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	755	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.905957897	1	2.69E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	86171105	12A2p6	cell line	sgMsh2	86171105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	347	0	0	NA	exonic	Olfr1044	synonymous SNV	Olfr1044:NM_147011:exon1:c.T711G:p.A237A	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	1	1	2.71E-09	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	86198386	12A2p6	cell line	sgMsh2	86198386	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	882	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.G365A:p.R122H	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.789210745	2	0.9996932	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	617	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.96199653	1	1.00E-09	AAA	synonymous	NA	NA	NA	NA
M1_p20	chr2	86850868	12A2p6	cell line	sgMsh2	86850868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	347	0	0	NA	exonic	Olfr1095	nonsynonymous SNV	Olfr1095:NM_146730:exon1:c.A829G:p.T277A	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.999355619	1	2.84E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	263	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	1	1	0.9999999	AAA	nonsynonymous	A	6	AAAAAA	NA
M1_p20	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	459	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.868598809	1	0.9995668	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	410	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.775201087	2	0.989737	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87545195	12A2p6	cell line	sgMsh2	87545195	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	560	0	0	NA	exonic	Olfr1128	synonymous SNV	Olfr1128:NM_146349:exon1:c.T348G:p.A116A	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.765861315	2	0.9997923	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	391	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.695813024	2	0.9999989	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.156	393	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.728502227	NA	NA	CAT	frameshift	NA	NA	NA	1
M1_p20	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	658	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.751851657	2	0.9999979	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	348	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.770531201	2	0.9838115	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	596	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.929307328	1	2.18E-09	TAC	synonymous	TACT	8	TACTTACT	NA
M1_p20	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	476	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.929307328	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	294	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.971336302	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	456	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.976006188	1	1.15E-09	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	649	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.616424961	2	1	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	298	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.541706784	2	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	87991028	12A2p6	cell line	sgMsh2	87991028	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	36	0	0	NA	exonic	Olfr1158	frameshift deletion	Olfr1158:NM_146645:exon1:c.916delA:p.K307Nfs*4	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	585	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.597745417	2	1	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	487	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.611755075	2	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	1152	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.672463594	2	1	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88224667	12A2p6	cell line	sgMsh2	88224667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	1081	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.T364C:p.Y122H	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.733172113	2	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;MuSe;Vardict	3	0.091	547	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.424959632	3	0.9999873	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	321	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.779870973	2	0.9392243	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M1_p20	chr2	88486943	12A2p6	cell line	sgMsh2	88486943	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	660	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.C210A:p.F70L	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.770531201	2	0.9999146	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	177	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.65378405	2	0.99946	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88525797	12A2p6	cell line	sgMsh2	88525797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	442	0	0	NA	exonic	Olfr1186	synonymous SNV	Olfr1186:NM_146530:exon1:c.T213C:p.S71S	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.663123822	2	2.75E-09	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	404	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.863928923	1	0.9984247	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	619	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.812560176	2	0.6782167	CTA	synonymous	ACT	8	ACTACTAC	NA
M1_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	597	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.80789029	2	0.8185313	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	88973366	12A2p6	cell line	sgMsh2	88973366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	629	0	0	NA	exonic	Olfr1213	frameshift deletion	Olfr1213:NM_146898:exon3:c.524delA:p.H175Lfs*9	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.728502227	NA	NA	ATG	frameshift	A	6	AAAAAA	-1
M1_p20	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	422	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.681803366	2	0.9999999	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr2	89055081	12A2p6	cell line	sgMsh2	89055081	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	520	0	0	NA	exonic	Olfr1218	nonsynonymous SNV	Olfr1218:NM_146818:exon1:c.C344T:p.A115V	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.747181771	2	0.9999777	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	277	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.737841999	2	0.9965653	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	588	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.901288011	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	89528058	12A2p6	cell line	sgMsh2	89528058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	486	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.C351A:p.A117A	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.663123822	2	1.20E-09	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	376	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.54637667	2	1.78E-08	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	335	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-85191598-90446729	7	NA	NA	0.9	4.202897461	NA	NA	0.663123822	2	0.9999996	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M1_p20	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	380	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.471658493	2	0.9276325	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	437	0	0	NA	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.747181771	2	0.9998365	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	423	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	3	1	1	1.03E-09	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	91169815	12A2p6	cell line	sgMsh2	91169815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	97	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon9:c.A1745G:p.Y582C,Madd:NM_001177719:exon10:c.A1745G:p.Y582C,Madd:NM_145527:exon10:c.A1745G:p.Y582C"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.555716442	2	0.9968955	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	435	0	0	NA	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.644444277	2	1.21E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	243	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	1	0.826569834	1	0.8599397	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	92	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	2	1	1	0.9987019	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	97630251	12A2p6	cell line	sgMsh2	97630251	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	262	0	0	NA	exonic	Lrrc4c	synonymous SNV	"Lrrc4c:NM_001289744:exon2:c.C1221T:p.S407S,Lrrc4c:NM_178725:exon3:c.C1221T:p.S407S,Lrrc4c:NM_001363049:exon4:c.C1221T:p.S407S,Lrrc4c:NM_001289743:exon7:c.C1221T:p.S407S,Lrrc4c:NM_001289742:exon8:c.C1221T:p.S407S,Lrrc4c:NM_001363048:exon8:c.C1221T:p.S407S,Lrrc4c:NM_001363047:exon9:c.C1221T:p.S407S"	2qE1	chr2-90447765-97631195	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999998	GCG	synonymous	NA	NA	NA	NA
M1_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	409	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	4.28E-08	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	103279747	12A2p6	cell line	sgMsh2	103279747	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	54	0	0	NA	exonic	Ehf	frameshift deletion	Ehf:NM_007914:exon3:c.114delT:p.F38Lfs*30	2qE2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr2	105399066	12A2p6	cell line	sgMsh2	105399066	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.188	26	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon1:c.A140C:p.N47T	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.877938581	1	0.8978467	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	105842294	12A2p6	cell line	sgMsh2	105842294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	280	0	0	NA	exonic	Elp4	nonsynonymous SNV	Elp4:NM_023876:exon4:c.A445G:p.T149A	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	326	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	6.23E-09	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	107296108	12A2p6	cell line	sgMsh2	107296108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	382	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A1186G:p.S396G	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	5.37E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	114	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999596	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	111190395	12A2p6	cell line	sgMsh2	111190395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	110	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon17:c.1483delT:p.S495Lfs*11	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.821899948	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr2	111231096	12A2p6	cell line	sgMsh2	111231096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	326	0	0	NA	exonic	Olfr1275	synonymous SNV	Olfr1275:NM_001011795:exon1:c.T696C:p.S232S	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9845375	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	111335393	12A2p6	cell line	sgMsh2	111335393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	929	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C684A:p.R228R	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	1	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.24	1490	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	737	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	1	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	461	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	1.00E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M1_p20	chr2	111379900	12A2p6	cell line	sgMsh2	111379900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	262	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.A899G:p.K300R	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999998	AAG	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr2	111479432	12A2p6	cell line	sgMsh2	111479432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	439	0	0	NA	exonic	Olfr1288	nonsynonymous SNV	Olfr1288:NM_146400:exon1:c.C647T:p.T216I	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.765861315	2	0.9981049	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	359	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1.91E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	419	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1.04E-09	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	328	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	5.70E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	410	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1.06E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	112008810	12A2p6	cell line	sgMsh2	112008810	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	341	0	0	NA	exonic	Olfr1310	synonymous SNV	Olfr1310:NM_146449:exon1:c.C375A:p.A125A	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	3.36E-09	TGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	112480011	12A2p6	cell line	sgMsh2	112480011	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	73	0	0	NA	exonic	Chrm5	nonsynonymous SNV	Chrm5:NM_205783:exon1:c.C759A:p.F253L	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9964482	AGA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
M1_p20	chr2	112733018	12A2p6	cell line	sgMsh2	112733018	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	270	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon62:c.A8761G:p.T2921A	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	174	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999833	AAC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr2	114118768	12A2p6	cell line	sgMsh2	114118768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	109	0	0	NA	exonic	Aqr	nonsynonymous SNV	"Aqr:NM_001290788:exon26:c.A2948G:p.Q983R,Aqr:NM_009702:exon26:c.A2948G:p.Q983R"	2qE4	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994732	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	114195609	12A2p6	cell line	sgMsh2	114195609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	180	0	0	NA	exonic	Zfp770	synonymous SNV	Zfp770:NM_175466:exon2:c.T1978C:p.L660L	2qE4	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999878	AAA	synonymous	NA	NA	NA	NA
M1_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	245	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	114568021	12A2p6	cell line	sgMsh2	114568021	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	60	0	0	NA	exonic	Dph6	nonsynonymous SNV	"Dph6:NM_001356438:exon5:c.T404G:p.L135R,Dph6:NM_001356439:exon5:c.T404G:p.L135R,Dph6:NM_025675:exon5:c.T404G:p.L135R"	2qE4	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9929421	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	179	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999872	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	105	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9767009	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	34	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.742511885	1	0.7102303	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	96	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M1_p20	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	76	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9918964	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	49	0	0	NA	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9874139	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	63	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9939751	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	119774213	12A2p6	cell line	sgMsh2	119774213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	137	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon10:c.G1213T:p.G405W,Rpap1:NM_177294:exon11:c.G1213T:p.G405W"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998808	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	94	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	0.9948376	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M1_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	126	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1_p20	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	295	0	0	NA	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	104	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993131	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	166	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999744	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	107	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.889859	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	141	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999036	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.268	25	0	0	NA	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9564025	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr2	122798101	12A2p6	cell line	sgMsh2	122798101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon5:c.G523A:p.V175M,Sqor:NM_021507:exon5:c.G523A:p.V175M"	2qE5	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	159	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	TCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	107	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.742511885	2	0.7225867	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	121	0	0	NA	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9997213	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	446	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1.01E-09	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	162	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	TTA	synonymous	NA	NA	NA	NA
M1_p20	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	403	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.891948239	1	0.9999489	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	284	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	4.96E-08	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	160	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr2	129474620	12A2p6	cell line	sgMsh2	129474620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	147	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon2:c.T168C:p.C56C,F830045P16Rik:NM_177653:exon2:c.T168C:p.C56C"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999299	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.243	441	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	130422080	12A2p6	cell line	sgMsh2	130422080	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	220	0	0	NA	exonic	Pced1a	synonymous SNV	"Pced1a:NM_178762:exon5:c.C651T:p.S217S,Pced1a:NM_001114541:exon6:c.C651T:p.S217S"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999985	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	131	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998361	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	168	0	0	NA	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.999977	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	40	0	0	NA	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9798591	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	38	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9776532	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	111	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9995262	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	225	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	87	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9983078	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	134643895	12A2p6	cell line	sgMsh2	134643895	G	T	SNV	Mutect2;Vardict	2	0.157	28	0	0	NA	exonic	Tmx4	synonymous SNV	Tmx4:NM_029148:exon1:c.C111A:p.P37P	2qF2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.733172113	1	0.7247168	TGG	synonymous	NA	NA	NA	NA
M1_p20	chr2	135294969	12A2p6	cell line	sgMsh2	135294969	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	154	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon10:c.A983C:p.N328T,Plcb1:NM_019677:exon10:c.A983C:p.N328T"	2qF3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999517	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	140129202	12A2p6	cell line	sgMsh2	140129202	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.249	163	0	0	NA	exonic	Esf1	frameshift insertion	Esf1:NM_001081090:exon11:c.2017dupA:p.I673Nfs*21	2qF3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAT	frameshift	T	8	TTTTTTTT	1
M1_p20	chr2	142712797	12A2p6	cell line	sgMsh2	142712797	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	64	0	0	NA	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon19:c.A2080C:p.R694R,Kif16b:NM_001355123:exon20:c.A2113C:p.R705R"	2qG1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9942849	CTC	synonymous	CTG	8	CTGCTGCT	NA
M1_p20	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	61	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.965697	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	69	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9927513	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	18	0	0	NA	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9379655	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr2	152736474	12A2p6	cell line	sgMsh2	152736474	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	94	0	0	NA	exonic	Id1	nonsynonymous SNV	"Id1:NM_001355113:exon1:c.G134T:p.R45L,Id1:NM_001369018:exon1:c.G134T:p.R45L,Id1:NM_010495:exon1:c.G134T:p.R45L"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.9982243	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	202	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9996084	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr2	153232546	12A2p6	cell line	sgMsh2	153232546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	102	0	0	NA	exonic	Plagl2	nonsynonymous SNV	Plagl2:NM_018807:exon3:c.A434G:p.H145R	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9992362	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	187	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999916	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	180	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999878	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M1_p20	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	148	0	0	NA	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999335	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr2	155799841	12A2p6	cell line	sgMsh2	155799841	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	281	0	0	NA	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon4:c.C588A:p.F196L	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	155831048	12A2p6	cell line	sgMsh2	155831048	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	120	0	0	NA	exonic	Fam83c	nonsynonymous SNV	Fam83c:NM_027788:exon3:c.G650A:p.R217Q	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997061	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	69	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9956115	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.241	199	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999956	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	15	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	9.92E-05	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	702	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	150	0	0	NA	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9981277	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M1_p20	chr2	158043501	12A2p6	cell line	sgMsh2	158043501	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	exonic	Rprd1b	nonsynonymous SNV	"Rprd1b:NM_001291134:exon3:c.A377G:p.K126R,Rprd1b:NM_001291135:exon3:c.A377G:p.K126R,Rprd1b:NM_027434:exon3:c.A377G:p.K126R"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	77	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.485668151	2	0.9458382	GCG	synonymous	NA	NA	NA	NA
M1_p20	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	159	0	0	NA	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999629	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9738953	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	280	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	331	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	5.01E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M1_p20	chr2	164032567	12A2p6	cell line	sgMsh2	164032567	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	59	0	0	NA	exonic	Pabpc1l	synonymous SNV	Pabpc1l:NM_001114079:exon5:c.T723C:p.H241H	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9925601	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr2	164488344	12A2p6	cell line	sgMsh2	164488344	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	212	0	0	NA	exonic	Dbndd2	nonsynonymous SNV	"Dbndd2:NM_001048229:exon1:c.A95C:p.E32A,Dbndd2:NM_001048227:exon2:c.A95C:p.E32A,Dbndd2:NM_001048228:exon2:c.A95C:p.E32A,Dbndd2:NM_026797:exon2:c.A95C:p.E32A"	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	0.9999958	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	65	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9874622	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	392	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	1.16E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	88	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983952	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	168935270	12A2p6	cell line	sgMsh2	168935270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	54	0	0	NA	exonic	Zfp64	nonsynonymous SNV	"Zfp64:NM_001369059:exon5:c.T698C:p.I233T,Zfp64:NM_009564:exon5:c.T698C:p.I233T"	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	142	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999086	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	172432369	12A2p6	cell line	sgMsh2	172432369	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	171	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001276422:exon6:c.G2069A:p.G690D,Cass4:NM_001276423:exon6:c.G2063A:p.G688D,Cass4:NM_001080820:exon7:c.G2141A:p.G714D,Cass4:NM_001379465:exon7:c.G2147A:p.G716D,Cass4:NM_001379466:exon7:c.G2144A:p.G715D,Cass4:NM_001379467:exon7:c.G2138A:p.G713D"	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999804	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	150	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999402	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	146	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.9940533	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	111	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.9887043	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	55	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97631202-174782209	4	2	2	0.9	4.202897461	NA	1	1	1	0.990816	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	393	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-175009981-178033151	7	4	3	0.9	4.202897461	NA	2	0.882608467	1	0.9998088	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	165	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.691143138	2	0.9934042	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	168	0	0	NA	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	1	0.999977	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	93	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.733172113	2	0.7040108	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	119	0	0	NA	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996901	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr2	181424252	12A2p6	cell line	sgMsh2	181424252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	126	0	0	NA	exonic	Zbtb46	nonsynonymous SNV	"Zbtb46:NM_027656:exon1:c.T104C:p.V35A,Zbtb46:NM_028125:exon2:c.T104C:p.V35A"	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997863	GAC	nonsynonymous	ACGC	9	ACGCACGCA	NA
M1_p20	chr2	181596834	12A2p6	cell line	sgMsh2	181596834	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	55	0	0	NA	exonic	Samd10	frameshift deletion	"Samd10:NM_001370751:exon4:c.532delC:p.Q178Kfs*23,Samd10:NM_172676:exon4:c.499delC:p.Q167Kfs*23"	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M1_p20	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	119	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996901	ATC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	330	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-178034778-181807525	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.9091982	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	74	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M1_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	263	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	9699537	12A2p6	cell line	sgMsh2	9699537	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	exonic	Pag1	synonymous SNV	"Pag1:NM_053182:exon6:c.A555C:p.T185T,Pag1:NM_001195031:exon7:c.A555C:p.T185T"	3qA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	268	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	209	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999974	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	118	0	0	NA	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr3	15548855	12A2p6	cell line	sgMsh2	15548855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	476	0	0	NA	exonic	Sirpb1b	nonsynonymous SNV	Sirpb1b:NM_001173460:exon2:c.T166C:p.S56P	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.9801486	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	71	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9960519	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	19144391	12A2p6	cell line	sgMsh2	19144391	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	423	0	0	NA	exonic	Armc1	frameshift deletion	"Armc1:NM_001357689:exon4:c.404delT:p.L135Wfs*10,Armc1:NM_028840:exon4:c.404delT:p.L135Wfs*10"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	179	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999872	ACA	synonymous	NA	NA	NA	NA
M1_p20	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	57	0	0	NA	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9917335	AAT	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr3	28099736	12A2p6	cell line	sgMsh2	28099736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	201	0	0	NA	exonic	Pld1	nonsynonymous SNV	"Pld1:NM_008875:exon20:c.T2303C:p.L768P,Pld1:NM_001164056:exon21:c.T2303C:p.L768P,Pld1:NM_001368667:exon21:c.T2417C:p.L806P"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.999996	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	423	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.03E-09	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	30598185	12A2p6	cell line	sgMsh2	30598185	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	133	0	0	NA	exonic	Actrt3	nonsynonymous SNV	Actrt3:NM_029690:exon2:c.G759T:p.E253D	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998526	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	220	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.980676074	1	0.9999947	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	78	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	0.9972741	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	36180189	12A2p6	cell line	sgMsh2	36180189	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	132	0	0	NA	exonic	Qrfpr	frameshift deletion	Qrfpr:NM_198192:exon6:c.1002delT:p.F334fs*0	3qB	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	TTCA	9	TTCATTCAT	-1
M1_p20	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	371	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.48E-09	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	37065134	12A2p6	cell line	sgMsh2	37065134	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	102	0	0	NA	exonic	Adad1	frameshift deletion	Adad1:NM_009350:exon3:c.363delA:p.K123Nfs*6	3qB	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	236	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr3	49745073	12A2p6	cell line	sgMsh2	49745073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.385	87	0	0	NA	exonic	Pcdh18	frameshift deletion	Pcdh18:NM_130448:exon4:c.2939delA:p.K980Rfs*27	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1_p20	chr3	49755889	12A2p6	cell line	sgMsh2	49755889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	338	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.G976T:p.A326S	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	3.76E-09	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	53517015	12A2p6	cell line	sgMsh2	53517015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	208	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon24:c.A9000G:p.I3000M	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999973	GTA	nonsynonymous	TGTA	8	TGTATGTA	NA
M1_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	155	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	282	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	174	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999833	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	54794243	12A2p6	cell line	sgMsh2	54794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	251	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.T904C:p.Y302H	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	291	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	3.45E-08	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	185	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999907	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	374	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.41E-09	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	402	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	1.09E-09	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	89	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr3	59252205	12A2p6	cell line	sgMsh2	59252205	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	166	0	0	NA	exonic	Med12l	nonsynonymous SNV	Med12l:NM_177855:exon26:c.A3674G:p.K1225R	3qD	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999744	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	178	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999865	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	13	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	0.9204646	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	64126612	12A2p6	cell line	sgMsh2	64126612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	416	0	0	NA	exonic	Vmn2r2	synonymous SNV	"Vmn2r2:NM_001104592:exon3:c.C1236T:p.I412I,Vmn2r2:NM_001385025:exon4:c.C1488T:p.I496I"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.04E-09	GGA	synonymous	NA	NA	NA	NA
M1_p20	chr3	64407011	12A2p6	cell line	sgMsh2	64407011	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	310	0	0	NA	exonic	Vmn2r4	nonsynonymous SNV	"Vmn2r4:NM_001104615:exon2:c.C281A:p.S94Y,Vmn2r4:NM_001385080:exon3:c.C554A:p.S185Y"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.793880632	2	0.778974	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	67596713	12A2p6	cell line	sgMsh2	67596713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	261	0	0	NA	exonic	Mfsd1	nonsynonymous SNV	Mfsd1:NM_025813:exon11:c.T1037C:p.M346T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	430	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.02E-09	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	126	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997863	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	69016773	12A2p6	cell line	sgMsh2	69016773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	317	0	0	NA	exonic	Smc4	nonsynonymous SNV	"Smc4:NM_001356976:exon7:c.A758G:p.Y253C,Smc4:NM_133786:exon7:c.A968G:p.Y323C"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	9.43E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.336	74	0	0	NA	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	266	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	76707951	12A2p6	cell line	sgMsh2	76707951	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	152	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon16:c.C2318T:p.S773F,Fstl5:NM_178673:exon16:c.C2318T:p.S773F"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.9997482	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	79618867	12A2p6	cell line	sgMsh2	79618867	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	161	0	0	NA	exonic	Etfdh	nonsynonymous SNV	Etfdh:NM_025794:exon4:c.A456C:p.K152N	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	97	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990042	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	326	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	6.23E-09	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	130	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	183	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999896	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	83065924	12A2p6	cell line	sgMsh2	83065924	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	124	0	0	NA	exonic	Plrg1	frameshift deletion	Plrg1:NM_016784:exon7:c.535delA:p.A181Pfs*46	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr3	83070683	12A2p6	cell line	sgMsh2	83070683	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	200	0	0	NA	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon13:c.A1235C:p.N412T	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999958	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	83922987	12A2p6	cell line	sgMsh2	83922987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	exonic	Tmem131l	nonsynonymous SNV	Tmem131l:NM_172681:exon24:c.A2747G:p.N916S	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	218	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999984	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	495	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M1_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	238	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988928	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	89142439	12A2p6	cell line	sgMsh2	89142439	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	283	0	0	NA	exonic	Pklr	nonsynonymous SNV	"Pklr:NM_001099779:exon6:c.A835T:p.I279F,Pklr:NM_013631:exon6:c.A928T:p.I310F"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	48	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M1_p20	chr3	89218045	12A2p6	cell line	sgMsh2	89218045	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.219	132	0	0	NA	exonic	Thbs3	frameshift insertion	Thbs3:NM_013691:exon4:c.562dupA:p.I189Nfs*14	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TGA	frameshift	NA	NA	NA	1
M1_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9933046	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	121	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997213	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	89954524	12A2p6	cell line	sgMsh2	89954524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	229	0	0	NA	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon9:c.T721C:p.F241L,Atp8b2:NM_001081182:exon10:c.T664C:p.F222L"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.9991141	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	90065588	12A2p6	cell line	sgMsh2	90065588	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	176	0	0	NA	exonic	1700094D03Rik	nonsynonymous SNV	1700094D03Rik:NM_028567:exon4:c.G283T:p.A95S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.999985	AGC	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	68	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	0.9953733	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	155	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	226	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	TCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	381	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.28E-09	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr3	93471188	12A2p6	cell line	sgMsh2	93471188	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.273	91	0	0	NA	exonic	Tchhl1	frameshift deletion	Tchhl1:NM_027762:exon3:c.1198delA:p.K401Rfs*117	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr3	94489580	12A2p6	cell line	sgMsh2	94489580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	60	0	0	NA	exonic	Celf3	synonymous SNV	"Celf3:NM_001357787:exon9:c.T846C:p.D282D,Celf3:NM_001379256:exon11:c.T1239C:p.D413D,Celf3:NM_001289613:exon12:c.T1467C:p.D489D,Celf3:NM_001289620:exon12:c.T1095C:p.D365D,Celf3:NM_001357784:exon12:c.T1383C:p.D461D,Celf3:NM_001379255:exon12:c.T1098C:p.D366D,Celf3:NM_172434:exon12:c.T1380C:p.D460D,Celf3:NM_001289616:exon13:c.T1152C:p.D384D,Celf3:NM_001357785:exon13:c.T1239C:p.D413D,Celf3:NM_001357786:exon13:c.T1155C:p.D385D,Celf3:NM_001379249:exon13:c.T1467C:p.D489D,Celf3:NM_001379250:exon13:c.T1380C:p.D460D,Celf3:NM_001379251:exon13:c.T1236C:p.D412D,Celf3:NM_001379252:exon13:c.T1239C:p.D413D,Celf3:NM_001379253:exon13:c.T1155C:p.D385D,Celf3:NM_001379254:exon13:c.T1152C:p.D384D"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9929421	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	622	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr3	94885727	12A2p6	cell line	sgMsh2	94885727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	198	0	0	NA	exonic	Psmb4	nonsynonymous SNV	Psmb4:NM_008945:exon4:c.T509C:p.V170A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999953	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	74	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9966312	CTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	77	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.779870973	1	7.91E-08	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	216	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9999594	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	320	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	331	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	5.01E-09	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95835683	12A2p6	cell line	sgMsh2	95835683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	233	0	0	NA	exonic	Prpf3	nonsynonymous SNV	"Prpf3:NM_001316751:exon11:c.T1487C:p.V496A,Prpf3:NM_027541:exon11:c.T1487C:p.V496A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999993	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999014	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	150	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999402	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	198	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999953	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	152	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	204	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999966	AGT	synonymous	NA	NA	NA	NA
M1_p20	chr3	97912727	12A2p6	cell line	sgMsh2	97912727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	170	0	0	NA	exonic	Sec22b	nonsynonymous SNV	Sec22b:NM_011342:exon3:c.T334C:p.F112L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999793	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	98810942	12A2p6	cell line	sgMsh2	98810942	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	368	0	0	NA	exonic	Hsd3b6	synonymous SNV	Hsd3b6:NM_013821:exon2:c.G105T:p.L35L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.56E-09	CCA	synonymous	NA	NA	NA	NA
M1_p20	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	128	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998078	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr3	100027194	12A2p6	cell line	sgMsh2	100027194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	64	0	0	NA	exonic	Spag17	synonymous SNV	Spag17:NM_028892:exon14:c.A1791G:p.R597R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9942849	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	205	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999968	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	101007941	12A2p6	cell line	sgMsh2	101007941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	189	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon7:c.A2321G:p.Y774C	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999925	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	148	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999335	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	397	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.12E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.157	29	0	0	NA	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.733172113	1	0.7190962	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	100	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9991507	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	232	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999992	CTG	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	187	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999916	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	106115283	12A2p6	cell line	sgMsh2	106115283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	294	0	0	NA	exonic	Chia1	nonsynonymous SNV	Chia1:NM_023186:exon3:c.T172C:p.F58L	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	259	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	113	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995739	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.2212	104	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M1_p20	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9892472	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	107614596	12A2p6	cell line	sgMsh2	107614596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	299	0	0	NA	exonic	Strip1	synonymous SNV	Strip1:NM_153563:exon20:c.T2265C:p.N755N	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	2.29E-08	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	227	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.999999	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.161	37	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.751851657	1	0.7162544	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	155	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999542	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr3	108427335	12A2p6	cell line	sgMsh2	108427335	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	80	0	0	NA	exonic	Sars	nonsynonymous SNV	"Sars:NM_001204979:exon10:c.T1312A:p.C438S,Sars:NM_011319:exon11:c.T1384A:p.C462S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	190	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999929	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	58	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.714492568	2	0.5517889	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	114061524	12A2p6	cell line	sgMsh2	114061524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	132	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon3:c.A432C:p.K144N	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998446	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	114061537	12A2p6	cell line	sgMsh2	114061537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	127	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon3:c.A445G:p.N149D	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997973	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	115122665	12A2p6	cell line	sgMsh2	115122665	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	431	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.A1146C:p.K382N,Olfm3:NM_153157:exon6:c.A1245C:p.K415N,Olfm3:NM_153458:exon6:c.A1185C:p.K395N"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	152	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	72	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9957939	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	152	0	0	NA	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	267	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	154	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999517	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	117671976	12A2p6	cell line	sgMsh2	117671976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	220	0	0	NA	exonic	Plppr5	nonsynonymous SNV	"Plppr5:NM_001305451:exon5:c.T875C:p.M292T,Plppr5:NM_029425:exon5:c.T875C:p.M292T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999985	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	119427246	12A2p6	cell line	sgMsh2	119427246	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	547	0	0	NA	exonic	Dpyd	nonsynonymous SNV	Dpyd:NM_170778:exon22:c.T2865A:p.N955K	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	262	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	123479673	12A2p6	cell line	sgMsh2	123479673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	305	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon4:c.A917G:p.N306S	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.616424961	2	2.13E-08	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	151	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	125609527	12A2p6	cell line	sgMsh2	125609527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	183	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon5:c.C1282T:p.P428S	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999896	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	188	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999921	CGA	synonymous	NA	NA	NA	NA
M1_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	266	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	0.9999997	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	295	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	2.81E-08	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	73	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9792785	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	296	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	2.67E-08	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	150	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.980676074	1	0.9998554	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	266	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9994474	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	151	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	224	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	135626634	12A2p6	cell line	sgMsh2	135626634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	207	0	0	NA	exonic	Nfkb1	nonsynonymous SNV	Nfkb1:NM_008689:exon7:c.T359C:p.V120A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.999997	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	115	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996168	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	266	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.798550518	2	0.6111792	AAA	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr3	141211441	12A2p6	cell line	sgMsh2	141211441	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	129	0	0	NA	exonic	Pdha2	nonsynonymous SNV	Pdha2:NM_008811:exon1:c.G305A:p.C102Y	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998178	GCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	162	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	353	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	2.25E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	351	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.943316986	1	0.9999994	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9980679	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	127	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.775201087	2	0.5497793	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	152428148	12A2p6	cell line	sgMsh2	152428148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	258	0	0	NA	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001355673:exon3:c.A842G:p.Q281R,Zzz3:NM_001080755:exon4:c.A842G:p.Q281R,Zzz3:NM_001287139:exon4:c.A842G:p.Q281R"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	74	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.789210745	1	7.56E-08	CCA	synonymous	C	5	CCCCC	NA
M1_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	637	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	160	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	160	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	236	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	99	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	0.565056214	2	0.9971615	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	112	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995507	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	251	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr3	158170655	12A2p6	cell line	sgMsh2	158170655	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	82	0	0	NA	exonic	Lrrc7	synonymous SNV	"Lrrc7:NM_001370781:exon18:c.G1896C:p.V632V,Lrrc7:NM_001370782:exon18:c.G1896C:p.V632V,Lrrc7:NM_001081358:exon19:c.G1797C:p.V599V,Lrrc7:NM_001291452:exon19:c.G1797C:p.V599V,Lrrc7:NM_001291453:exon19:c.G1797C:p.V599V"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.202897461	NA	1	1	1	0.9977945	GCA	synonymous	NA	NA	NA	NA
M1_p20	chr4	3172475	12A2p6	cell line	sgMsh2	3172475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	476	0	0	NA	exonic	Vmn1r2	synonymous SNV	Vmn1r2:NM_001167534:exon1:c.T393C:p.G131G	4qA1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	0.737841999	2	0.9999835	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	256	0	0	NA	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	350	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	2.46E-09	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	105	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9993486	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	76	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9969696	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	320	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	8.19E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	24521278	12A2p6	cell line	sgMsh2	24521278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	297	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon10:c.T1154C:p.L385P	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	2.54E-08	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	221	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999986	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	118	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996732	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr4	32645212	12A2p6	cell line	sgMsh2	32645212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	149	0	0	NA	exonic	Casp8ap2	synonymous SNV	"Casp8ap2:NM_001122978:exon8:c.A4284G:p.S1428S,Casp8ap2:NM_011997:exon8:c.A4284G:p.S1428S"	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.999937	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	114	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.999596	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	33077460	12A2p6	cell line	sgMsh2	33077460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	56	0	0	NA	exonic	Gabrr2	nonsynonymous SNV	Gabrr2:NM_008076:exon3:c.G301A:p.A101T	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	2	1	1	0.9912867	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	33246296	12A2p6	cell line	sgMsh2	33246296	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	49	0	0	NA	exonic	Pnrc1	frameshift deletion	Pnrc1:NM_001033225:exon2:c.662delA:p.K221Sfs*13	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	197	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999951	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	205	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999968	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	258	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	0.952656758	1	0.999992	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	38	0	0	NA	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9776532	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	78	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	109	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9994732	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	169	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999782	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.358	362	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M1_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	73	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9964482	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	52	0	0	NA	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9892472	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	69	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9956115	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	165	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.999973	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	59113907	12A2p6	cell line	sgMsh2	59113907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	139	0	0	NA	exonic	Shoc1	synonymous SNV	Shoc1:NM_001370843:exon2:c.T57C:p.Y19Y	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998928	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr4	59217182	12A2p6	cell line	sgMsh2	59217182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	165	0	0	NA	exonic	Ugcg	nonsynonymous SNV	Ugcg:NM_011673:exon6:c.A705C:p.E235D	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.999973	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	59493202	12A2p6	cell line	sgMsh2	59493202	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	179	0	0	NA	exonic	Ptbp3	synonymous SNV	"Ptbp3:NM_178164:exon7:c.T783G:p.P261P,Ptbp3:NM_144904:exon8:c.T867G:p.P289P"	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999872	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr4	59911934	12A2p6	cell line	sgMsh2	59911934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	247	0	0	NA	exonic	Slc46a2	nonsynonymous SNV	Slc46a2:NM_021053:exon3:c.T1277C:p.I426T	4qB3	chr4-3172212-60740166	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	71	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9960519	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	204	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999966	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	70281170	12A2p6	cell line	sgMsh2	70281170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	107	0	0	NA	exonic	Cdk5rap2	nonsynonymous SNV	"Cdk5rap2:NM_001313762:exon18:c.A1897G:p.T633A,Cdk5rap2:NM_145990:exon21:c.A2716G:p.T906A"	4qC2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9994142	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	128	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998078	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	208	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999973	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	83417779	12A2p6	cell line	sgMsh2	83417779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	14	0	0	NA	exonic	Snapc3	synonymous SNV	"Snapc3:NM_001358795:exon1:c.T27G:p.G9G,Snapc3:NM_029949:exon1:c.T27G:p.G9G"	4qC3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9243089	GTG	synonymous	GGC	8	GGCGGCGG	NA
M1_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	300	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	2.18E-08	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	88129016	12A2p6	cell line	sgMsh2	88129016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	198	0	0	NA	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon4:c.T251C:p.V84A	4qC4	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9999953	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	88571288	12A2p6	cell line	sgMsh2	88571288	T	C	SNV	Mutect2;Vardict	2	0.11	324	0	0	NA	exonic	Ifna14	nonsynonymous SNV	Ifna14:NM_206975:exon1:c.A511G:p.I171V	4qC4	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.513687467	2	0.9999521	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	96475526	12A2p6	cell line	sgMsh2	96475526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	239	0	0	NA	exonic	Cyp2j8	nonsynonymous SNV	"Cyp2j8:NM_001370972:exon5:c.A467T:p.E156V,Cyp2j8:NM_001104927:exon6:c.A899T:p.E300V"	4qC5	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999995	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	104	0	0	NA	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9993131	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	24	0	0	NA	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9541331	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	93	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.980676074	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr4	107106807	12A2p6	cell line	sgMsh2	107106807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	49	0	0	NA	exonic	Cdcp2	nonsynonymous SNV	Cdcp2:NM_172873:exon4:c.T853C:p.W285R	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9874139	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	107977643	12A2p6	cell line	sgMsh2	107977643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	97	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon2:c.C175T:p.R59W	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9990042	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	309	0	0	NA	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	1.39E-08	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	246	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	263	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	118	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996732	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	211	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999977	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr4	113597701	12A2p6	cell line	sgMsh2	113597701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	113	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon40:c.T2991C:p.T997T,Skint5:NM_001167878:exon40:c.T2991C:p.T997T"	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9995739	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	120	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997061	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Strelka2;Vardict	2	0.2308	26	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1_p20	chr4	116089272	12A2p6	cell line	sgMsh2	116089272	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.434	34	0	0	NA	exonic	Lrrc41	frameshift deletion	Lrrc41:NM_153521:exon4:c.1183delC:p.R396Afs*34	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1_p20	chr4	116089541	12A2p6	cell line	sgMsh2	116089541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Lrrc41	synonymous SNV	Lrrc41:NM_153521:exon4:c.A1452G:p.S484S	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9964482	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	252	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	117681851	12A2p6	cell line	sgMsh2	117681851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	148	0	0	NA	exonic	Dmap1	synonymous SNV	Dmap1:NM_023178:exon2:c.T87C:p.D29D	4qD2.1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999335	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.185	41	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.863928923	1	0.09647946	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.947986872	1	0.994231	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	372	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	1.45E-09	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	167	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999758	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	96	0	0	NA	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.99895	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	62	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9936486	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	208	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999973	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	97	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9990042	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr4	126180790	12A2p6	cell line	sgMsh2	126180790	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	91	0	0	NA	exonic	Thrap3	synonymous SNV	"Thrap3:NM_146153:exon3:c.T162C:p.Y54Y,Thrap3:NM_001356455:exon4:c.T162C:p.Y54Y,Thrap3:NM_001356456:exon4:c.T162C:p.Y54Y"	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9986312	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr4	126355121	12A2p6	cell line	sgMsh2	126355121	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	99	0	0	NA	exonic	Ago3	stopgain	Ago3:NM_153402:exon13:c.C1636T:p.Q546X	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9991045	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	127312355	12A2p6	cell line	sgMsh2	127312355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	101	0	0	NA	exonic	Gja4	nonsynonymous SNV	Gja4:NM_008120:exon2:c.A614C:p.E205A	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9991946	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	150	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999402	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	128909374	12A2p6	cell line	sgMsh2	128909374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	104	0	0	NA	exonic	Trim62	nonsynonymous SNV	"Trim62:NM_001370757:exon4:c.A1120G:p.R374G,Trim62:NM_001370756:exon5:c.A1234G:p.R412G,Trim62:NM_178110:exon5:c.A1216G:p.R406G"	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9993131	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9933046	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.404	71	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	200	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999958	TTC	synonymous	NA	NA	NA	NA
M1_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	27	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.960623	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	195	0	0	NA	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999945	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr4	133681690	12A2p6	cell line	sgMsh2	133681690	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	107	0	0	NA	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon20:c.C5493T:p.R1831R,Arid1a:NM_001363070:exon20:c.C4350T:p.R1450R"	4qD2.3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9994142	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	214	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.999998	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	37	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9764633	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	51	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.821899948	1	9.08E-07	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	40	0	0	NA	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9798591	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	129	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9998178	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	145	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999221	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	47	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9860236	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	139371766	12A2p6	cell line	sgMsh2	139371766	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.142	44	0	0	NA	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon20:c.T2550C:p.A850A,Emc1:NM_146157:exon21:c.T2559C:p.A853A"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.663123822	2	0.000618799	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	62	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9936486	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	119	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996901	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	17	0	0	NA	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9347916	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	39	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9787842	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	199	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	2	1	1	0.9999956	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr4	143810423	12A2p6	cell line	sgMsh2	143810423	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.254	220	0	0	NA	exonic	Pramel26	frameshift insertion	Pramel26:NM_001005371:exon4:c.1336dupT:p.C446Lfs*2	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	ACA	frameshift	A	5	AAAAA	1
M1_p20	chr4	143810741	12A2p6	cell line	sgMsh2	143810741	G	A	SNV	Mutect2;Strelka2	2	0.136	133	0	0	NA	exonic	Pramel26	nonsynonymous SNV	"Pramel26:NM_001005371:exon4:c.C1019T:p.T340I,Pramel26:NM_001347257:exon4:c.C1019T:p.T340I"	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.635104505	2	0.9974587	AGT	nonsynonymous	TCAG	8	TCAGTCAG	NA
M1_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	675	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-61672369-145468270	3	2	1	0.9	4.202897461	NA	1	0.747181771	2	0.9999995	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	145536605	12A2p6	cell line	sgMsh2	145536605	C	T	SNV	Mutect2;Vardict	2	0.03	999	0	0	NA	exonic	Zfp990	nonsynonymous SNV	Zfp990:NM_001324553:exon4:c.C172T:p.R58C	4qE1	chr4-145530561-145701461	12.11989106	9.11989106	3	0.9	4.202897461	NA	1	0.140096582	3	1	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	148261094	12A2p6	cell line	sgMsh2	148261094	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	78	0	0	NA	exonic	Disp3	nonsynonymous SNV	Disp3:NM_001083342:exon4:c.G1288A:p.A430T	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	2	1	1	0.9972741	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	149106266	12A2p6	cell line	sgMsh2	149106266	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.308	226	0	0	NA	exonic	Dffa	nonsynonymous SNV	"Dffa:NM_001025296:exon2:c.A251G:p.K84R,Dffa:NM_010044:exon2:c.A251G:p.K84R"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	81	0	0	NA	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9976745	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	154341810	12A2p6	cell line	sgMsh2	154341810	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.562	18	0	0	NA	exonic	Prdm16	nonsynonymous SNV	"Prdm16:NM_001177995:exon9:c.C1520T:p.P507L,Prdm16:NM_001291026:exon9:c.C1514T:p.P505L,Prdm16:NM_001291029:exon9:c.C1520T:p.P507L,Prdm16:NM_027504:exon9:c.C1517T:p.P506L"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	2	1	1	0.9379655	CGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	56	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9912867	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	154990701	12A2p6	cell line	sgMsh2	154990701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	28	0	0	NA	exonic	Plch2	nonsynonymous SNV	"Plch2:NM_001113360:exon16:c.T2455C:p.C819R,Plch2:NM_001356470:exon16:c.T2212C:p.C738R,Plch2:NM_175556:exon16:c.T2455C:p.C819R"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9625833	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	154996271	12A2p6	cell line	sgMsh2	154996271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	58	0	0	NA	exonic	Plch2	nonsynonymous SNV	"Plch2:NM_001113360:exon11:c.G1757A:p.R586H,Plch2:NM_001356470:exon11:c.G1514A:p.R505H,Plch2:NM_175556:exon11:c.G1757A:p.R586H"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9921576	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	60	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9929421	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.208	100	0	0	NA	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	0.971336302	1	0.9979675	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	122	0	0	NA	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997357	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	212	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999978	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	197	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999951	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	2.29E-08	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	3679083	12A2p6	cell line	sgMsh2	3679083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	257	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon11:c.T832C:p.Y278H,Tmbim7:NM_029154:exon11:c.T598C:p.Y200H"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	134	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998602	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	131	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998361	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	104	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	2	1	1	0.9993131	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	65	0	0	NA	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	2	1	1	0.9945788	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	157	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999588	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	212	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9998415	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	6771461	12A2p6	cell line	sgMsh2	6771461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	255	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.A1601G:p.K534R	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	6778523	12A2p6	cell line	sgMsh2	6778523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	62	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon3:c.A294G:p.V98V	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9782212	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr5	7976914	12A2p6	cell line	sgMsh2	7976914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	255	0	0	NA	exonic	Steap4	synonymous SNV	Steap4:NM_054098:exon3:c.A876G:p.Q292Q	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	0.929307328	1	0.9999448	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	54	0	0	NA	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	9512505	12A2p6	cell line	sgMsh2	9512505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	111	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.A1344C:p.K448N	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	0.803220404	1	0.7301522	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	192	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999936	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	84	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	2	1	1	0.9980162	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	169	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344382-14859185	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9993463	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	152	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	20215449	12A2p6	cell line	sgMsh2	20215449	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.185	189	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon4:c.T393C:p.P131P,Magi2:NM_015823:exon4:c.T393C:p.P131P,Magi2:NM_001170746:exon5:c.T882C:p.P294P"	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.863928923	1	0.9812087	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	153	0	0	NA	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M1_p20	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	279	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	24320084	12A2p6	cell line	sgMsh2	24320084	G	-	Deletion	Strelka2;Vardict	2	0.2778	18	0	0	NA	exonic	Kcnh2	frameshift deletion	"Kcnh2:NM_001294162:exon11:c.2379delC:p.T794Lfs*130,Kcnh2:NM_013569:exon15:c.3405delC:p.T1136Lfs*130"	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M1_p20	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.636	31	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9679165	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr5	24380308	12A2p6	cell line	sgMsh2	24380308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	51	0	0	NA	exonic	Nos3	synonymous SNV	Nos3:NM_008713:exon19:c.T2457C:p.P819P	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9886675	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	87	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983078	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	65	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9945788	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.969525	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	25261997	12A2p6	cell line	sgMsh2	25261997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	108	0	0	NA	exonic	Galnt11	synonymous SNV	"Galnt11:NM_001359890:exon9:c.T1296C:p.R432R,Galnt11:NM_144908:exon9:c.T1296C:p.R432R"	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994445	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	25315029	12A2p6	cell line	sgMsh2	25315029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	144	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon36:c.T6082C:p.L2028L	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999178	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.558	178	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999865	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	508	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GAA	synonymous	NA	NA	NA	NA
M1_p20	chr5	27760034	12A2p6	cell line	sgMsh2	27760034	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	125	0	0	NA	exonic	Paxip1	frameshift deletion	Paxip1:NM_018878:exon10:c.2027delC:p.P676Lfs*24	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M1_p20	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	44	0	0	NA	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.8621538	ATT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr5	30115901	12A2p6	cell line	sgMsh2	30115901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	130	0	0	NA	exonic	Garem2	synonymous SNV	Garem2:NM_001167879:exon5:c.C1461T:p.C487C	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998272	GCC	synonymous	NA	NA	NA	NA
M1_p20	chr5	30197383	12A2p6	cell line	sgMsh2	30197383	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	0	0	NA	exonic	Adgrf3	nonsynonymous SNV	Adgrf3:NM_001014394:exon10:c.C1646A:p.T549N	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999609	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	121	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997213	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	117	0	0	NA	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996554	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	216	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.779870973	2	0.7801088	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.488	102	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M1_p20	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	182	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999887	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M1_p20	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	182	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999887	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M1_p20	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9972741	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	80	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	31488148	12A2p6	cell line	sgMsh2	31488148	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	196	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A1244T:p.K415M	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999948	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	32316596	12A2p6	cell line	sgMsh2	32316596	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	113	0	0	NA	exonic	Plb1	nonsynonymous SNV	"Plb1:NM_030072:exon26:c.T1466G:p.L489R,Plb1:NM_001081407:exon27:c.T1751G:p.L584R"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995739	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	140	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.765861315	2	0.689783	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	323	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	7.13E-09	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	123	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997494	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M1_p20	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	186	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999912	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	135	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998675	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	33867623	12A2p6	cell line	sgMsh2	33867623	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	26	0	0	NA	exonic	Nsd2	nonsynonymous SNV	"Nsd2:NM_001081102:exon7:c.C1724A:p.A575D,Nsd2:NM_001177884:exon7:c.C1724A:p.A575D,Nsd2:NM_175231:exon7:c.C1721A:p.A574D"	5qB2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9585642	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	216	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999982	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	36397705	12A2p6	cell line	sgMsh2	36397705	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.332	9	0	0	NA	exonic	Sorcs2	nonsynonymous SNV	Sorcs2:NM_030889:exon1:c.G341A:p.R114H	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.09625087	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	58	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9921576	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	37286411	12A2p6	cell line	sgMsh2	37286411	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	231	0	0	NA	exonic	Crmp1	frameshift deletion	"Crmp1:NM_001136058:exon12:c.1667delC:p.L558Wfs*102,Crmp1:NM_007765:exon12:c.1325delC:p.L444Wfs*102"	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.812560176	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M1_p20	chr5	38673915	12A2p6	cell line	sgMsh2	38673915	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	163	0	0	NA	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.C746A:p.P249H,Zfp518b:NM_001081144:exon4:c.C746A:p.P249H"	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.99997	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	39614829	12A2p6	cell line	sgMsh2	39614829	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	110	0	0	NA	exonic	Hs3st1	nonsynonymous SNV	Hs3st1:NM_010474:exon2:c.T470G:p.V157G	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.644444277	2	0.9869002	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	41818693	12A2p6	cell line	sgMsh2	41818693	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	302	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon10:c.A5277G:p.E1759E,Bod1l:NM_001310601:exon10:c.A5277G:p.E1759E"	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	1.97E-08	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr5	44014873	12A2p6	cell line	sgMsh2	44014873	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	149	0	0	NA	exonic	Prom1	nonsynonymous SNV	"Prom1:NM_001163581:exon14:c.A1685C:p.N562T,Prom1:NM_001163582:exon14:c.A1700C:p.N567T,Prom1:NM_001163578:exon15:c.A1775C:p.N592T,Prom1:NM_001163583:exon15:c.A1775C:p.N592T,Prom1:NM_001163584:exon15:c.A1775C:p.N592T,Prom1:NM_001163585:exon16:c.A1802C:p.N601T,Prom1:NM_008935:exon16:c.A1775C:p.N592T,Prom1:NM_001163577:exon17:c.A1802C:p.N601T"	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.812560176	1	0.7608917	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	160	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999649	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	64	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9942849	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9138808	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	194	0	0	NA	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999942	GTT	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	344	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.943316986	1	0.9999992	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	283	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.915297669	1	0.9999235	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	64316379	12A2p6	cell line	sgMsh2	64316379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	122	0	0	NA	exonic	Tbc1d1	synonymous SNV	"Tbc1d1:NM_001289514:exon13:c.A1857G:p.K619K,Tbc1d1:NM_019636:exon14:c.A2244G:p.K748K,Tbc1d1:NM_001310611:exon16:c.A2523G:p.K841K"	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.863928923	1	0.959977	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	65223032	12A2p6	cell line	sgMsh2	65223032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	350	0	0	NA	exonic	Wdr19	nonsynonymous SNV	"Wdr19:NM_001359879:exon10:c.A894G:p.I298M,Wdr19:NM_001359880:exon10:c.A894G:p.I298M,Wdr19:NM_153391:exon10:c.A894G:p.I298M"	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	2.46E-09	TAA	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.719162454	2	0.5231867	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	76	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9969696	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	215	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.9386471	1	0.9998943	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	171	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.789210745	2	0.5371162	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	38	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9776532	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	69563130	12A2p6	cell line	sgMsh2	69563130	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	125	0	0	NA	exonic	Guf1	nonsynonymous SNV	Guf1:NM_172711:exon9:c.C932A:p.T311N	5qC3.1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997746	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	72353881	12A2p6	cell line	sgMsh2	72353881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	227	0	0	NA	exonic	Corin	nonsynonymous SNV	"Corin:NM_001122756:exon10:c.T1352C:p.L451P,Corin:NM_016869:exon10:c.T1550C:p.L517P"	5qC3.2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	72539709	12A2p6	cell line	sgMsh2	72539709	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	327	0	0	NA	exonic	Nfxl1	synonymous SNV	Nfxl1:NM_133921:exon9:c.G1122A:p.K374K	5qC3.2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9999909	TCT	synonymous	NA	NA	NA	NA
M1_p20	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	214	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.999998	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr5	72710300	12A2p6	cell line	sgMsh2	72710300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	188	0	0	NA	exonic	Txk	nonsynonymous SNV	"Txk:NM_001289494:exon9:c.A835T:p.I279F,Txk:NM_013698:exon9:c.A901T:p.I301F,Txk:NM_001122754:exon10:c.A901T:p.I301F,Txk:NM_001289495:exon10:c.A739T:p.I247F"	5qC3.2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.742511885	2	0.9532502	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	145	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999221	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.752	103	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M1_p20	chr5	76631450	12A2p6	cell line	sgMsh2	76631450	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	372	0	0	NA	exonic	Cep135	nonsynonymous SNV	Cep135:NM_199032:exon18:c.T2306G:p.V769G	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	1.45E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	127	0	0	NA	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.936618	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr5	76966323	12A2p6	cell line	sgMsh2	76966323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	145	0	0	NA	exonic	Paics	synonymous SNV	"Paics:NM_001356974:exon8:c.T1026C:p.T342T,Paics:NM_025939:exon8:c.T1029C:p.T343T,Paics:NM_001356971:exon9:c.T1029C:p.T343T,Paics:NM_001356972:exon9:c.T1029C:p.T343T,Paics:NM_001356973:exon9:c.T1029C:p.T343T"	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999221	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	148	0	0	NA	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.826569834	1	0.8573838	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	75	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9968049	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	190	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999929	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	197	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999951	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	252	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	87520874	12A2p6	cell line	sgMsh2	87520874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	142	0	0	NA	exonic	Sult1b1	nonsynonymous SNV	"Sult1b1:NM_001382837:exon5:c.T508C:p.Y170H,Sult1b1:NM_001356943:exon6:c.T508C:p.Y170H,Sult1b1:NM_019878:exon6:c.T508C:p.Y170H"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999086	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	111	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9995262	GCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	204	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999966	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	177	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999857	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	229	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.9421188	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	267	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	260	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999998	AAC	synonymous	A	5	AAAAA	NA
M1_p20	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	246	0	0	NA	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999995	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	143	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999133	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	325	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-16012095-94221358	4	2	2	0.9	4.202897461	NA	1	1	1	6.51E-09	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	96086179	12A2p6	cell line	sgMsh2	96086179	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	292	0	0	NA	exonic	Cnot6l	synonymous SNV	"Cnot6l:NM_001285511:exon9:c.T972G:p.A324A,Cnot6l:NM_001285514:exon9:c.T687G:p.A229A,Cnot6l:NM_144910:exon9:c.T972G:p.A324A,Cnot6l:NM_178854:exon9:c.T987G:p.A329A"	5qE3	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	0.723832341	2	0.9993382	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	98004117	12A2p6	cell line	sgMsh2	98004117	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.11	106	0	0	NA	exonic	Antxr2	nonsynonymous SNV	Antxr2:NM_133738:exon6:c.A494T:p.K165M	5qE3	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	0.513687467	2	0.9913011	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	57	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	1	0.9917335	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	165	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9951362	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	101937566	12A2p6	cell line	sgMsh2	101937566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	101	0	0	NA	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon14:c.T2061C:p.T687T	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9809256	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	147	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999299	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	118	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996732	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	326	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	1	1	6.23E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	421	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	1	1	1.03E-09	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	113	0	0	NA	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	1	0.9995739	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr5	106903057	12A2p6	cell line	sgMsh2	106903057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	65	0	0	NA	exonic	Hfm1	synonymous SNV	Hfm1:NM_177873:exon10:c.C1020A:p.A340A	5qE5	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	1	1	0.9945788	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr5	107821791	12A2p6	cell line	sgMsh2	107821791	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	197	0	0	NA	exonic	Evi5	nonsynonymous SNV	"Evi5:NM_001378824:exon3:c.C253A:p.H85N,Evi5:NM_001378825:exon3:c.C253A:p.H85N,Evi5:NM_007964:exon3:c.C385A:p.H129N"	5qF	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999951	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	94	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	2	1	1	0.9988325	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-95270364-108777740	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9795825	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	109086534	12A2p6	cell line	sgMsh2	109086534	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	1139	0	0	NA	exonic	Vmn2r12	nonsynonymous SNV	"Vmn2r12:NM_001104623:exon6:c.A1811C:p.K604T,Vmn2r12:NM_001385229:exon6:c.A1808C:p.K603T"	5qF	chr5-108778611-110105136	5	3	2	0.9	4.202897461	NA	1	0.999355619	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	109156155	12A2p6	cell line	sgMsh2	109156155	A	C	SNV	Mutect2;Vardict	2	0.025	767	0	0	NA	exonic	Vmn2r13	synonymous SNV	"Vmn2r13:NM_001104624:exon6:c.T2409G:p.V803V,Vmn2r13:NM_001384974:exon6:c.T2406G:p.V802V"	5qF	chr5-108778611-110105136	5	3	2	0.9	4.202897461	NA	1	0.116747152	3	1	CAA	synonymous	ACA	8	ACAACAAC	NA
M1_p20	chr5	109219013	12A2p6	cell line	sgMsh2	109219013	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	753	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon4:c.T1340G:p.L447R,Vmn2r14:NM_001384975:exon4:c.T1340G:p.L447R"	5qF	chr5-108778611-110105136	5	3	2	0.9	4.202897461	NA	1	0.849919264	1	0.9993167	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	187	0	0	NA	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.686473252	2	0.9979428	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	113745185	12A2p6	cell line	sgMsh2	113745185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	99	0	0	NA	exonic	Sart3	synonymous SNV	"Sart3:NM_001356621:exon17:c.T2439C:p.S813S,Sart3:NM_001356623:exon17:c.T1218C:p.S406S,Sart3:NM_016926:exon17:c.T2385C:p.S795S"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	0.9957108	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	103	0	0	NA	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9972395	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	49	0	0	NA	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.976006188	1	0.9820857	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	66	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9948577	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	113	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9995739	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	91	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9986312	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.21	23	0	0	NA	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.980676074	1	9.51E-06	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	48	0	0	NA	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr5	121828483	12A2p6	cell line	sgMsh2	121828483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.5	7	0	0	NA	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.A567G:p.A189A,Sh2b3:NM_008507:exon2:c.A567G:p.A189A,Sh2b3:NM_001306126:exon3:c.A567G:p.A189A,Sh2b3:NM_001306127:exon3:c.A567G:p.A189A"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.8927065	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr5	122591144	12A2p6	cell line	sgMsh2	122591144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	124	0	0	NA	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon10:c.A905G:p.E302G,Ift81:NM_001358917:exon11:c.A1124G:p.E375G,Ift81:NM_001358918:exon11:c.A956G:p.E319G,Ift81:NM_009879:exon11:c.A1124G:p.E375G"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	CTC	nonsynonymous	CT	9	CTCTCTCTC	NA
M1_p20	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	49	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9874139	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	122941048	12A2p6	cell line	sgMsh2	122941048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	111	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001003953:exon9:c.A859G:p.T287A,Kdm2b:NM_001378863:exon9:c.A841G:p.T281A"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995262	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	123178171	12A2p6	cell line	sgMsh2	123178171	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.358	184	0	0	NA	exonic	Hpd	frameshift deletion	Hpd:NM_008277:exon8:c.516delA:p.K172Nfs*13	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M1_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	187	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999916	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	142	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999086	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	82	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.663123822	2	0.9094237	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	210	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999975	GTG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	98	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.537036898	2	0.9960191	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	124140539	12A2p6	cell line	sgMsh2	124140539	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.159	44	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon5:c.T628C:p.F210L,Pitpnm2:NM_011256:exon6:c.T628C:p.F210L"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.742511885	1	0.6554272	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	107	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	AAA	synonymous	NA	NA	NA	NA
M1_p20	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	314	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.887278353	1	0.9995203	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	124490769	12A2p6	cell line	sgMsh2	124490769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Snrnp35	nonsynonymous SNV	Snrnp35:NM_029532:exon2:c.C644T:p.A215V	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.990816	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	124556812	12A2p6	cell line	sgMsh2	124556812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	145	0	0	NA	exonic	Ddx55	nonsynonymous SNV	"Ddx55:NM_001190795:exon4:c.T302C:p.V101A,Ddx55:NM_026409:exon4:c.T302C:p.V101A"	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.793880632	1	0.5861444	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	124755780	12A2p6	cell line	sgMsh2	124755780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	66	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon17:c.T2747C:p.F916S	5qF	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9948577	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	125484592	12A2p6	cell line	sgMsh2	125484592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	89	0	0	NA	exonic	Aacs	nonsynonymous SNV	Aacs:NM_030210:exon3:c.G293A:p.R98H	5qG1.1	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.663123822	2	0.9342524	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	134	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998602	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	118	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.85458915	1	0.9424066	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	125	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997746	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	134670473	12A2p6	cell line	sgMsh2	134670473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	105	0	0	NA	exonic	Limk1	synonymous SNV	"Limk1:NM_001305875:exon4:c.A429G:p.L143L,Limk1:NM_010717:exon5:c.A453G:p.L151L"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993486	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr5	135374980	12A2p6	cell line	sgMsh2	135374980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	84	0	0	NA	exonic	Nsun5	nonsynonymous SNV	"Nsun5:NM_001359617:exon7:c.T809C:p.L270S,Nsun5:NM_145414:exon7:c.T809C:p.L270S"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9933628	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	168	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.999977	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	137031954	12A2p6	cell line	sgMsh2	137031954	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.568	8	0	0	NA	exonic	Vgf	synonymous SNV	Vgf:NM_001039385:exon2:c.A969G:p.Q323Q	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.8980053	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	137387001	12A2p6	cell line	sgMsh2	137387001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	89	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon80:c.A15169G:p.M5057V	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9984781	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	198	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.977643	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	107	0	0	NA	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	153	0	0	NA	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.999899	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	138165941	12A2p6	cell line	sgMsh2	138165941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	98	0	0	NA	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon13:c.T1496C:p.L499P,Mcm7:NM_001356577:exon13:c.T1496C:p.L499P,Mcm7:NM_008568:exon13:c.T1817C:p.L606P"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990557	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	138167205	12A2p6	cell line	sgMsh2	138167205	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	105	0	0	NA	exonic	Mcm7	nonsynonymous SNV	"Mcm7:NM_001356576:exon11:c.A1115T:p.N372I,Mcm7:NM_001356577:exon11:c.A1115T:p.N372I,Mcm7:NM_008568:exon11:c.A1436T:p.N479I"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9993486	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	138194790	12A2p6	cell line	sgMsh2	138194790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	66	0	0	NA	exonic	Mblac1	synonymous SNV	Mblac1:NM_177878:exon1:c.C393A:p.P131P	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9948577	CCG	synonymous	NA	NA	NA	NA
M1_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	184	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999902	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	139807660	12A2p6	cell line	sgMsh2	139807660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	0	0	NA	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon5:c.A613G:p.I205V,Tmem184a:NM_001161548:exon6:c.A685G:p.I229V"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9999936	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	136	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998743	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr5	141956162	12A2p6	cell line	sgMsh2	141956162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	34	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon11:c.A1564G:p.I522V	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9725109	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	62	0	0	NA	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.733172113	1	7.13E-06	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M1_p20	chr5	144820348	12A2p6	cell line	sgMsh2	144820348	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	120	0	0	NA	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon43:c.A6362T:p.K2121M	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997061	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	100	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	0.995867	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	96	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9891816	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	368	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	2	1	1	1.56E-09	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	147639177	12A2p6	cell line	sgMsh2	147639177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	300	0	0	NA	exonic	Flt1	nonsynonymous SNV	Flt1:NM_001363135:exon13:c.A2020G:p.K674E	5qG3	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	2.18E-08	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	202	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9624423	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr5	150495765	12A2p6	cell line	sgMsh2	150495765	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	139	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon60:c.A8673C:p.T2891T	5qG3	chr5-110105137-151647482	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998928	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.634	76	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M1_p20	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	224	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.537036898	2	0.9999704	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.863928923	1	0.9500378	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M1_p20	chr6	3536860	12A2p6	cell line	sgMsh2	3536860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	434	0	0	NA	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon12:c.T830G:p.F277C,Vps50:NM_001167751:exon12:c.T830G:p.F277C,Vps50:NM_024260:exon12:c.T830G:p.F277C"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.929307328	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	295	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	2.81E-08	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	198	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999953	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M1_p20	chr6	4634068	12A2p6	cell line	sgMsh2	4634068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	459	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon6:c.T931C:p.Y311H,Casd1:NM_001379144:exon11:c.T1396C:p.Y466H,Casd1:NM_145398:exon14:c.T1780C:p.Y594H"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	2	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	451	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.663123822	2	2.12E-09	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	16	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.931463	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	31	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9679165	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	206	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999969	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	310	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.5697261	2	6.03E-09	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.166	249	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.775201087	2	0.8892677	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M1_p20	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	211	0	0	NA	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.354911341	3	0.9999841	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	117	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.990015846	1	0.9995081	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M1_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	515	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	4.80E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	243	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.485668151	2	0.9866186	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	13836280	12A2p6	cell line	sgMsh2	13836280	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	146	0	0	NA	exonic	Gpr85	frameshift deletion	"Gpr85:NM_001330667:exon3:c.624delT:p.F208Lfs*7,Gpr85:NM_001330666:exon4:c.624delT:p.F208Lfs*7,Gpr85:NM_145066:exon4:c.624delT:p.F208Lfs*7"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.80789029	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	416	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.04E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	18319747	12A2p6	cell line	sgMsh2	18319747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	206	0	0	NA	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon26:c.G4196T:p.R1399M	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.756521543	2	0.9303786	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.716	359	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	4	1	1	1.91E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M1_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	268	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	24876200	12A2p6	cell line	sgMsh2	24876200	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	348	0	0	NA	exonic	Hyal5	nonsynonymous SNV	Hyal5:NM_028957:exon2:c.T71G:p.L24R	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	2.63E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	28244195	12A2p6	cell line	sgMsh2	28244195	T	-	Deletion	Strelka2;Vardict	2	0.1592	201	0	0	NA	exonic	Zfp800	frameshift deletion	"Zfp800:NM_001081678:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364595:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364596:exon6:c.770delA:p.K257Rfs*4"	6qA3.2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.743445862	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M1_p20	chr6	29286044	12A2p6	cell line	sgMsh2	29286044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	118	0	0	NA	exonic	Fam71f2	synonymous SNV	Fam71f2:NM_001101486:exon3:c.T501C:p.G167G	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996732	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	242	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	65	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9945788	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	217	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999983	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	332	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.840579492	1	0.9627623	AAC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr6	35196540	12A2p6	cell line	sgMsh2	35196540	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	280	0	0	NA	exonic	Nup205	stopgain	Nup205:NM_027513:exon9:c.T1325A:p.L442X	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	0.999941	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	199	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.406280088	3	0.9910328	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	37986596	12A2p6	cell line	sgMsh2	37986596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	208	0	0	NA	exonic	Svopl	nonsynonymous SNV	Svopl:NM_177200:exon15:c.T1375C:p.S459P	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999973	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	319	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.784540859	2	0.09486002	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	84	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9980162	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M1_p20	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	34	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9725109	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	39623603	12A2p6	cell line	sgMsh2	39623603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	157	0	0	NA	exonic	Braf	synonymous SNV	Braf:NM_139294:exon19:c.T2079C:p.Y693Y	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.588405645	2	0.9999283	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr6	40386899	12A2p6	cell line	sgMsh2	40386899	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	245	0	0	NA	exonic	Agk	nonsynonymous SNV	Agk:NM_023538:exon12:c.G812T:p.R271M	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999996	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	40462188	12A2p6	cell line	sgMsh2	40462188	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	278	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon9:c.C1126A:p.L376M	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.565056214	2	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	415	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.05E-09	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	296	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	2.67E-08	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	274	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.770531201	2	0.9457989	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	1027	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.560386328	2	1	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	87	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1_p20	chr6	42400772	12A2p6	cell line	sgMsh2	42400772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	354	0	0	NA	exonic	Tas2r143	nonsynonymous SNV	Tas2r143:NM_001001452:exon1:c.T535C:p.Y179H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.54637667	2	4.31E-08	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	155	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999542	ATG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	611	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	46347092	12A2p6	cell line	sgMsh2	46347092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	465	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon11:c.T1674G:p.C558W	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.583735758	2	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	195	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999945	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	47803442	12A2p6	cell line	sgMsh2	47803442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	194	0	0	NA	exonic	Pdia4	nonsynonymous SNV	"Pdia4:NM_009787:exon6:c.A956G:p.Y319C,Pdia4:NM_001368756:exon7:c.A1130G:p.Y377C"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.901288011	1	0.9980206	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	219	0	0	NA	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.616424961	2	0.9999951	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	95	0	0	NA	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.70048291	2	0.8664239	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	121	0	0	NA	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.373590885	3	0.9843736	CCC	synonymous	NA	NA	NA	NA
M1_p20	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	135	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9998675	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	171	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.9722662	GTC	synonymous	NA	NA	NA	NA
M1_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	75	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.83123972	1	0.8681064	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	145	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.681803366	2	0.9901099	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	48978445	12A2p6	cell line	sgMsh2	48978445	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	109	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon4:c.C1988T:p.A663V	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9994732	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	49108985	12A2p6	cell line	sgMsh2	49108985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	143	0	0	NA	exonic	Igf2bp3	synonymous SNV	Igf2bp3:NM_023670:exon7:c.C759T:p.T253T	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999133	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Strelka2;Vardict	2	0.2353	17	0	0	NA	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1_p20	chr6	51478513	12A2p6	cell line	sgMsh2	51478513	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	139	0	0	NA	exonic	Cbx3	nonsynonymous SNV	"Cbx3:NM_001355002:exon4:c.A243C:p.K81N,Cbx3:NM_007624:exon4:c.A243C:p.K81N"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9998928	AAG	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	76	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9969696	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	266	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.919967555	1	0.9999168	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	55897820	12A2p6	cell line	sgMsh2	55897820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	227	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.A754G:p.K252E	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.420289746	3	0.9810166	AAA	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr6	56886715	12A2p6	cell line	sgMsh2	56886715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	541	0	0	NA	exonic	Nt5c3	nonsynonymous SNV	"Nt5c3:NM_026004:exon6:c.T479C:p.I160T,Nt5c3:NM_001252374:exon7:c.T377C:p.I126T,Nt5c3:NM_001360963:exon7:c.T377C:p.I126T"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.910627783	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	56986251	12A2p6	cell line	sgMsh2	56986251	A	-	Deletion	Mutect2;Vardict	2	0.144	85	0	0	NA	exonic	Vmn1r5	frameshift deletion	Vmn1r5:NM_134174:exon2:c.910delA:p.K305Nfs*12	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.672463594	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1_p20	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	894	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.593075531	2	1	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	554	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.737841999	2	0.999998	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	283	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	205	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999968	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr6	57659700	12A2p6	cell line	sgMsh2	57659700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	211	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon19:c.T2400C:p.C800C	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.695813024	2	0.9986459	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Vardict	2	0.153	175	0	0	NA	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.714492568	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.149	181	0	0	NA	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.695813024	2	0.9955662	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	409	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.681803366	2	0.9999999	GTA	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr6	58887504	12A2p6	cell line	sgMsh2	58887504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	135	0	0	NA	exonic	Herc3	synonymous SNV	"Herc3:NM_001361967:exon18:c.A2122C:p.R708R,Herc3:NM_028705:exon18:c.A2122C:p.R708R,Herc3:NM_001361966:exon19:c.A2122C:p.R708R"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.658453936	2	0.9941072	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	293	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	3.11E-08	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	179	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.67713348	2	0.9982635	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr6	60975857	12A2p6	cell line	sgMsh2	60975857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	129	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.T1121A:p.I374N,Mmrn1:NM_027613:exon6:c.T1121A:p.I374N"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	0.9975605	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	64533659	12A2p6	cell line	sgMsh2	64533659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	342	0	0	NA	exonic	Grid2	nonsynonymous SNV	"Grid2:NM_001370966:exon14:c.T2272C:p.F758L,Grid2:NM_008167:exon14:c.T2272C:p.F758L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.52302724	2	0.9999946	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	65952849	12A2p6	cell line	sgMsh2	65952849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	422	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A67G:p.I23V	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.80789029	2	0.6338256	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.061	524	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.28486305	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	603	0	0	NA	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.518357354	2	1.45E-08	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr6	66612495	12A2p6	cell line	sgMsh2	66612495	A	-	Deletion	Mutect2;Vardict	2	0.142	471	0	0	NA	exonic	Vmn1r33	frameshift deletion	Vmn1r33:NM_134169:exon1:c.74delT:p.F25Sfs*4	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.663123822	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M1_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	344	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	3.01E-09	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	320	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.761191429	2	0.9895032	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	71795322	12A2p6	cell line	sgMsh2	71795322	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	101	0	0	NA	exonic	Reep1	nonsynonymous SNV	Reep1:NM_178608:exon6:c.C593T:p.S198L	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.593075531	2	0.9954122	TCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	146	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999261	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	137	0	0	NA	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.555716442	2	0.9997512	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	108	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.466988607	2	0.8864448	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	72615545	12A2p6	cell line	sgMsh2	72615545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	149	0	0	NA	exonic	Tgoln1;Tgoln2	synonymous SNV	"Tgoln1:NM_009443:exon2:c.T951C:p.I317I,Tgoln2:NM_009444:exon2:c.T951C:p.I317I"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.999937	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.126	119	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.588405645	2	0.9988962	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	80021747	12A2p6	cell line	sgMsh2	80021747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	321	0	0	NA	exonic	Lrrtm4	stopgain	"Lrrtm4:NM_001134743:exon2:c.C141A:p.Y47X,Lrrtm4:NM_001282102:exon2:c.C141A:p.Y47X,Lrrtm4:NM_001347261:exon2:c.C138A:p.Y46X,Lrrtm4:NM_178731:exon2:c.C138A:p.Y46X"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999996	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	80022343	12A2p6	cell line	sgMsh2	80022343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	275	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.G737T:p.S246I,Lrrtm4:NM_001282102:exon2:c.G737T:p.S246I,Lrrtm4:NM_001347261:exon2:c.G734T:p.S245I,Lrrtm4:NM_178731:exon2:c.G734T:p.S245I"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.812560176	1	0.6564164	AGT	nonsynonymous	GTCA	8	GTCAGTCA	NA
M1_p20	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.138	105	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.644444277	2	0.9827986	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	82492630	12A2p6	cell line	sgMsh2	82492630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	351	0	0	NA	exonic	Tacr1	nonsynonymous SNV	Tacr1:NM_009313:exon3:c.A494G:p.Q165R	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.784540859	2	0.9345395	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	191	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.9386471	1	0.9997587	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	82	0	0	NA	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9977945	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	313	0	0	NA	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.14E-08	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr6	86394436	12A2p6	cell line	sgMsh2	86394436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	600	0	0	NA	exonic	Pcyox1	nonsynonymous SNV	"Pcyox1:NM_001355687:exon2:c.T260C:p.V87A,Pcyox1:NM_025823:exon3:c.T467C:p.V156A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	170	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	0.9997674	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M1_p20	chr6	87827587	12A2p6	cell line	sgMsh2	87827587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	182	0	0	NA	exonic	Isy1	synonymous SNV	Isy1:NM_133934:exon6:c.T297C:p.Y99Y	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999891	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	50	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	0.9679911	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	20	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9438777	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	662	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	185	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	0.997088	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	122	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.359581227	3	0.9941172	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	95122375	12A2p6	cell line	sgMsh2	95122375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	318	0	0	NA	exonic	Kbtbd8	synonymous SNV	"Kbtbd8:NM_001102670:exon2:c.T633C:p.C211C,Kbtbd8:NM_001008785:exon3:c.T864C:p.C288C"	6qD2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.723832341	2	0.9997051	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr6	95655509	12A2p6	cell line	sgMsh2	95655509	A	G	SNV	Mutect2;Vardict	2	0.083	72	0	0	NA	exonic	Suclg2	nonsynonymous SNV	"Suclg2:NM_001326558:exon2:c.T31C:p.F11L,Suclg2:NM_011507:exon2:c.T178C:p.F60L"	6qD2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.387600544	3	0.7320697	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	265	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.705152796	2	0.9996611	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	204	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.485668151	2	0.9814816	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	203	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999964	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	207	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999971	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	107569194	12A2p6	cell line	sgMsh2	107569194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	399	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A1952G:p.Y651C	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.826569834	1	0.8640535	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	96	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.99895	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	108381326	12A2p6	cell line	sgMsh2	108381326	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	81	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon18:c.T1852C:p.F618L	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9976745	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	108815045	12A2p6	cell line	sgMsh2	108815045	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	311	0	0	NA	exonic	Arl8b	nonsynonymous SNV	Arl8b:NM_026011:exon3:c.T266G:p.V89G	6qE2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.849919264	1	0.9827688	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	113065655	12A2p6	cell line	sgMsh2	113065655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	438	0	0	NA	exonic	Thumpd3	nonsynonymous SNV	"Thumpd3:NM_001355266:exon7:c.G1126A:p.D376N,Thumpd3:NM_008188:exon7:c.G1126A:p.D376N"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.737841999	2	0.9999541	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	113367045	12A2p6	cell line	sgMsh2	113367045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	39	0	0	NA	exonic	Tada3	synonymous SNV	"Tada3:NM_133932:exon9:c.C1242T:p.D414D,Tada3:NM_001372392:exon10:c.C1266T:p.D422D,Tada3:NM_001372393:exon10:c.C1266T:p.D422D"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9787842	GGT	synonymous	NA	NA	NA	NA
M1_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	223	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.835909606	1	0.9202176	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	608	0	0	NA	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	1.34E-09	TTA	synonymous	NA	NA	NA	NA
M1_p20	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	107	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.775201087	1	0.527221	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	143	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999133	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	115932093	12A2p6	cell line	sgMsh2	115932093	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	83	0	0	NA	exonic	Rho	nonsynonymous SNV	Rho:NM_145383:exon1:c.A89G:p.Y30C	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.65378405	2	0.9303706	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	116043711	12A2p6	cell line	sgMsh2	116043711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	255	0	0	NA	exonic	Tmcc1	nonsynonymous SNV	Tmcc1:NM_177412:exon4:c.T659C:p.I220T	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.476328379	2	0.9569139	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	116582023	12A2p6	cell line	sgMsh2	116582023	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	87	0	0	NA	exonic	Olfr215	frameshift deletion	Olfr215:NM_146446:exon1:c.922delA:p.I308Yfs*3	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr6	118413915	12A2p6	cell line	sgMsh2	118413915	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	211	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon5:c.T452C:p.L151P	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.52302724	2	0.9997606	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	295	0	0	NA	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	2.81E-08	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Vardict	2	0.18	125	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.840579492	NA	NA	CGT	frameshift	NA	NA	NA	-1
M1_p20	chr6	119217862	12A2p6	cell line	sgMsh2	119217862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	49	0	0	NA	exonic	Dcp1b	nonsynonymous SNV	Dcp1b:NM_001033379:exon8:c.A1542C:p.E514D	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9874139	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	98	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9990557	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.444	9	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.09625087	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M1_p20	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.1667	126	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.778470008	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M1_p20	chr6	121880840	12A2p6	cell line	sgMsh2	121880840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	398	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon27:c.A3291G:p.V1097V	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.691143138	2	0.9999995	TAG	synonymous	GAT	8	GATGATGA	NA
M1_p20	chr6	122320320	12A2p6	cell line	sgMsh2	122320320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	135	0	0	NA	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon11:c.T2234C:p.L745S,Phc1:NM_001271579:exon12:c.T2390C:p.L797S,Phc1:NM_007905:exon12:c.T2390C:p.L797S,Phc1:NM_001355215:exon13:c.T2438C:p.L813S"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.868598809	1	0.971268	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	267	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
M1_p20	chr6	122464160	12A2p6	cell line	sgMsh2	122464160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	257	0	0	NA	exonic	Rimklb	nonsynonymous SNV	Rimklb:NM_027664:exon3:c.T224C:p.V75A	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.420289746	3	0.9915315	TAC	nonsynonymous	ACC	9	ACCACCACC	NA
M1_p20	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	99	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.644444277	2	0.9761896	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	122833293	12A2p6	cell line	sgMsh2	122833293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	237	0	0	NA	exonic	Foxj2	nonsynonymous SNV	Foxj2:NM_021899:exon5:c.T610C:p.Y204H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.513687467	2	0.9996213	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	1111	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	1290	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.868598809	1	9.56E-09	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	117	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996554	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr6	124540328	12A2p6	cell line	sgMsh2	124540328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	492	0	0	NA	exonic	C1s1	synonymous SNV	"C1s1:NM_001097617:exon4:c.T402G:p.T134T,C1s1:NM_144938:exon4:c.T402G:p.T134T"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.709822682	2	0.9999998	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	66	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9948577	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	39	0	0	NA	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9787842	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	124860154	12A2p6	cell line	sgMsh2	124860154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	182	0	0	NA	exonic	Gpr162	nonsynonymous SNV	"Gpr162:NM_013533:exon3:c.T926C:p.V309A,Gpr162:NM_001355257:exon4:c.T926C:p.V309A"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.630434619	2	0.9998862	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	149	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.537036898	2	0.9995299	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	107	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9647007	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M1_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	239	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.424959632	3	0.9749683	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	127088093	12A2p6	cell line	sgMsh2	127088093	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	73	0	0	NA	exonic	Tigar	nonsynonymous SNV	Tigar:NM_177003:exon6:c.C591A:p.S197R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.952656758	1	0.9898806	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	127732773	12A2p6	cell line	sgMsh2	127732773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	142	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon2:c.G123T:p.K41N	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.714492568	2	0.955188	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	128359260	12A2p6	cell line	sgMsh2	128359260	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	100	0	0	NA	exonic	Rhno1	nonsynonymous SNV	"Rhno1:NM_001326583:exon2:c.A11T:p.K4I,Rhno1:NM_001326585:exon2:c.A11T:p.K4I,Rhno1:NM_001326586:exon3:c.A11T:p.K4I,Rhno1:NM_001326587:exon3:c.A11T:p.K4I"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9991507	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr6	128432629	12A2p6	cell line	sgMsh2	128432629	G	A	SNV	Mutect2;Vardict	2	0.098	47	0	0	NA	exonic	Fkbp4	synonymous SNV	Fkbp4:NM_010219:exon9:c.C1065T:p.G355G	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.457648835	2	0.8502588	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	103	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9626775	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	58	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.583735758	2	0.9230523	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	129271351	12A2p6	cell line	sgMsh2	129271351	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	328	0	0	NA	exonic	Cd69	synonymous SNV	Cd69:NM_001033122:exon2:c.T171G:p.A57A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.644444277	2	0.9999999	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr6	129380018	12A2p6	cell line	sgMsh2	129380018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	389	0	0	NA	exonic	Clec12b	synonymous SNV	"Clec12b:NM_027709:exon4:c.T456C:p.S152S,Clec12b:NM_001204223:exon5:c.T456C:p.S152S"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.83123972	1	0.9169005	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr6	129583140	12A2p6	cell line	sgMsh2	129583140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	181	0	0	NA	exonic	Klre1	nonsynonymous SNV	"Klre1:NM_001381986:exon5:c.A374G:p.Y125C,Klre1:NM_001381987:exon5:c.A374G:p.Y125C,Klre1:NM_001381988:exon5:c.A374G:p.Y125C,Klre1:NM_153590:exon5:c.A374G:p.Y125C"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999885	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	129865712	12A2p6	cell line	sgMsh2	129865712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	417	0	0	NA	exonic	Klra17	nonsynonymous SNV	"Klra17:NM_001381962:exon6:c.A625G:p.K209E,Klra17:NM_133203:exon6:c.A622G:p.K208E"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.597745417	2	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	142	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999086	CCC	synonymous	NA	NA	NA	NA
M1_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	346	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	2.81E-09	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	60	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.649114163	2	0.8131206	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	114	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	2	0.9970839	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	100	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.658453936	2	0.9658414	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	134479576	12A2p6	cell line	sgMsh2	134479576	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	130	0	0	NA	exonic	Lrp6	synonymous SNV	Lrp6:NM_008514:exon12:c.C2724T:p.P908P	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.826569834	1	0.8568951	CGG	synonymous	NA	NA	NA	NA
M1_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	267	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	284	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.933977214	1	0.9999852	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	230	0	0	NA	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9999991	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	177	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.537036898	2	0.9998342	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	136329362	12A2p6	cell line	sgMsh2	136329362	A	G	SNV	Mutect2;Vardict	2	0.121	229	0	0	NA	exonic	Eif4a3l1	nonsynonymous SNV	Eif4a3l1:NM_001142734:exon2:c.A820G:p.T274A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.565056214	2	0.9999992	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	240	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.607085189	2	0.9999993	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	136804229	12A2p6	cell line	sgMsh2	136804229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	217	0	0	NA	exonic	H4f16	nonsynonymous SNV	H4f16:NM_175652:exon1:c.A151G:p.I51V	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.681803366	2	0.9995771	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	137539334	12A2p6	cell line	sgMsh2	137539334	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	373	0	0	NA	exonic	Eps8	nonsynonymous SNV	"Eps8:NM_001271587:exon2:c.C125A:p.P42H,Eps8:NM_001271588:exon2:c.C47A:p.P16H,Eps8:NM_001271595:exon2:c.C47A:p.P16H,Eps8:NM_007945:exon3:c.C47A:p.P16H"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.43E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	263	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.873268695	1	0.9961791	ATT	synonymous	NA	NA	NA	NA
M1_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	133	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.602415303	2	0.9993166	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	526	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	142363551	12A2p6	cell line	sgMsh2	142363551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	569	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon14:c.T1793C:p.V598A,Recql:NM_001204907:exon14:c.T1793C:p.V598A,Recql:NM_001355511:exon14:c.T1793C:p.V598A,Recql:NM_023042:exon14:c.T1793C:p.V598A"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.368920999	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	533	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.541	424	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	3	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M1_p20	chr6	143083255	12A2p6	cell line	sgMsh2	143083255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	565	0	0	NA	exonic	C2cd5	nonsynonymous SNV	"C2cd5:NM_001109688:exon4:c.T257C:p.I86T,C2cd5:NM_001362113:exon4:c.T257C:p.I86T,C2cd5:NM_001362114:exon4:c.T257C:p.I86T,C2cd5:NM_001362115:exon4:c.T257C:p.I86T,C2cd5:NM_001362116:exon4:c.T257C:p.I86T,C2cd5:NM_001362117:exon4:c.T257C:p.I86T,C2cd5:NM_029081:exon4:c.T257C:p.I86T,C2cd5:NM_029897:exon4:c.T257C:p.I86T"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	1	0.840579492	1	0.9866035	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	144155037	12A2p6	cell line	sgMsh2	144155037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	118	0	0	NA	exonic	Sox5	synonymous SNV	"Sox5:NM_001113559:exon2:c.A225G:p.Q75Q,Sox5:NM_011444:exon2:c.A225G:p.Q75Q"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9996732	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	122	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.202897461	NA	2	1	1	0.9997357	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1544	434	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M1_p20	chr6	148933108	12A2p6	cell line	sgMsh2	148933108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	169	0	0	NA	exonic	Sinhcaf	nonsynonymous SNV	"Sinhcaf:NM_001355645:exon2:c.A22G:p.K8E,Sinhcaf:NM_019643:exon2:c.A22G:p.K8E"	6qG3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	307	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	225	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	CGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	45	0	0	NA	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9844822	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	138	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.999887	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	620	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr7	4468876	12A2p6	cell line	sgMsh2	4468876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	192	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon3:c.A40G:p.S14G,Eps8l1:NM_001374622:exon3:c.A223G:p.S75G,Eps8l1:NM_026146:exon3:c.A40G:p.S14G"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	0.67713348	2	0.999036	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	311	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	10	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	2	1	1	0.09175058	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M1_p20	chr7	4664738	12A2p6	cell line	sgMsh2	4664738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	exonic	Hspbp1	nonsynonymous SNV	"Hspbp1:NM_001360629:exon5:c.T755C:p.L252P,Hspbp1:NM_024172:exon5:c.T755C:p.L252P"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9971258	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	96	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.99895	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.333	14	0	0	NA	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	2	1	1	0.9243089	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	51	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9886675	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	5110630	12A2p6	cell line	sgMsh2	5110630	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	179	0	0	NA	exonic	Rfpl4	frameshift deletion	"Rfpl4:NM_001145013:exon3:c.551delA:p.N184Mfs*7,Rfpl4:NM_138954:exon3:c.551delA:p.N184Mfs*7"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	0.994685732	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	415	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	1.05E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	270	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	781	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	1	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	627	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	219	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.9193117	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	224	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9999783	CCC	synonymous	NA	NA	NA	NA
M1_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	177	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999857	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	7287791	12A2p6	cell line	sgMsh2	7287791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	48	0	0	NA	exonic	Clcn4	synonymous SNV	"Clcn4:NM_001357104:exon9:c.C1765T:p.L589L,Clcn4:NM_001302386:exon10:c.C1828T:p.L610L,Clcn4:NM_001357102:exon11:c.C2008T:p.L670L,Clcn4:NM_001357103:exon12:c.C2008T:p.L670L,Clcn4:NM_011334:exon12:c.C2008T:p.L670L,Clcn4:NM_001302387:exon13:c.C1915T:p.L639L"	7qA1	chr7-7283890-7297085	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	AGC	synonymous	GGCA	9	GGCAGGCAG	NA
M1_p20	chr7	7334278	12A2p6	cell line	sgMsh2	7334278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	488	0	0	NA	exonic	Vmn2r30	nonsynonymous SNV	"Vmn2r30:NM_001384913:exon2:c.A358G:p.K120E,Vmn2r30:NM_009490:exon2:c.A358G:p.K120E"	7qA1	chr7-7312117-8258069	9.99457613	7.99457613	2	0.9	4.202897461	NA	2	0.784540859	2	0.9876736	TTA	nonsynonymous	T	9	TTTTTTTTT	NA
M1_p20	chr7	7334434	12A2p6	cell line	sgMsh2	7334434	T	-	Deletion	Strelka2;Vardict	2	0.0616	1379	0	0	NA	exonic	Vmn2r30	frameshift deletion	"Vmn2r30:NM_001384913:exon2:c.202delA:p.T68Qfs*29,Vmn2r30:NM_009490:exon2:c.202delA:p.T68Qfs*29"	7qA1	chr7-7312117-8258069	9.99457613	7.99457613	2	0.9	4.202897461	NA	1	0.287664982	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr7	7396489	12A2p6	cell line	sgMsh2	7396489	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	78	0	0	NA	exonic	Vmn2r31	synonymous SNV	"Vmn2r31:NM_001105062:exon2:c.G468A:p.L156L,Vmn2r31:NM_001385037:exon2:c.G468A:p.L156L"	7qA1	chr7-7312117-8258069	9.99457613	7.99457613	2	0.9	4.202897461	NA	3	1	1	0.9972741	CCA	synonymous	NA	NA	NA	NA
M1_p20	chr7	9027645	12A2p6	cell line	sgMsh2	9027645	A	T	SNV	Mutect2;MuSe;Vardict	3	0.06	530	0	0	NA	exonic	Vmn2r39	synonymous SNV	"Vmn2r39:NM_001105071:exon2:c.T423A:p.L141L,Vmn2r39:NM_001385077:exon2:c.T423A:p.L141L"	7qA1	chr7-8318141-9989431	9.99457613	7.99457613	2	0.9	4.202897461	NA	1	0.280193164	3	1	TAA	synonymous	NA	NA	NA	NA
M1_p20	chr7	9986490	12A2p6	cell line	sgMsh2	9986490	A	G	SNV	Mutect2;Vardict	2	0.073	958	0	0	NA	exonic	Vmn2r49	nonsynonymous SNV	Vmn2r49:NM_001105156:exon3:c.T1073C:p.I358T	7qA1	chr7-8318141-9989431	9.99457613	7.99457613	2	0.9	4.202897461	NA	1	0.340901683	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	10087906	12A2p6	cell line	sgMsh2	10087906	C	T	SNV	Mutect2;Vardict	2	0.049	436	0	0	NA	exonic	Vmn2r51	synonymous SNV	Vmn2r51:NM_001105179:exon6:c.G1851A:p.V617V	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	1	0.228824417	3	1	TCA	synonymous	NA	NA	NA	NA
M1_p20	chr7	10100105	12A2p6	cell line	sgMsh2	10100105	A	C	SNV	Mutect2;Vardict	2	0.105	570	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.T1005G:p.N335K	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	1	0.490338037	2	0.9998012	AAT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr7	10171206	12A2p6	cell line	sgMsh2	10171206	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	320	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon3:c.G705T:p.K235N	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	2	1	1	8.19E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	216	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	2	1	1	0.9999982	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	10714379	12A2p6	cell line	sgMsh2	10714379	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	222	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C508A:p.L170M,Nlrp4b:NM_172481:exon4:c.C508A:p.L170M"	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	2	1	1	0.9999987	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	352	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-9991672-12363075	6	3	3	0.9	4.202897461	NA	1	0.9386471	1	0.9999991	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M1_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	0.887278353	1	0.9718101	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	77	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	0.667793708	2	0.8753342	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	23	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	2	1	1	0.9517512	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	16456237	12A2p6	cell line	sgMsh2	16456237	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	42	0	0	NA	exonic	Npas1	nonsynonymous SNV	Npas1:NM_008718:exon12:c.G1383T:p.Q461H	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.9818514	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	357	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	2.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	16906835	12A2p6	cell line	sgMsh2	16906835	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	29	0	0	NA	exonic	Ptgir	synonymous SNV	Ptgir:NM_008967:exon1:c.C51T:p.S17S	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	2	1	1	0.9644496	GCC	synonymous	NA	NA	NA	NA
M1_p20	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	32	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	2	1	1	0.969525	TGA	synonymous	NA	NA	NA	NA
M1_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	543	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M1_p20	chr7	18719486	12A2p6	cell line	sgMsh2	18719486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	471	0	0	NA	exonic	Psg22	synonymous SNV	Psg22:NM_001004152:exon2:c.A105G:p.G35G	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	98	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.9990557	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.23	18	0	0	NA	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.9379655	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	176	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.999985	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	19701767	12A2p6	cell line	sgMsh2	19701767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	80	0	0	NA	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.A1037G:p.N346S,Tomm40:NM_016871:exon10:c.A1037G:p.N346S"	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	19701789	12A2p6	cell line	sgMsh2	19701789	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.C1015A:p.L339M,Tomm40:NM_016871:exon10:c.C1015A:p.L339M"	7qA3	chr7-12415921-23274031	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983078	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.239	151	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999433	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	116	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9996366	CGC	synonymous	C	5	CCCCC	NA
M1_p20	chr7	25203553	12A2p6	cell line	sgMsh2	25203553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	23	0	0	NA	exonic	Dedd2	nonsynonymous SNV	Dedd2:NM_207677:exon5:c.C980T:p.T327I	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	0.9517512	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	21	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	0.9466289	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	18	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	0.9379655	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	41	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9808807	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M1_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	160	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999649	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	26771408	12A2p6	cell line	sgMsh2	26771408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	129	0	0	NA	exonic	Cyp2b19	synonymous SNV	Cyp2b19:NM_007814:exon9:c.C1473T:p.S491S	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998178	CCC	synonymous	NA	NA	NA	NA
M1_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	68	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9953733	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M1_p20	chr7	27581432	12A2p6	cell line	sgMsh2	27581432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	28	0	0	NA	exonic	2310022A10Rik	nonsynonymous SNV	"2310022A10Rik:NM_001122767:exon9:c.C1100T:p.T367I,2310022A10Rik:NM_001374792:exon11:c.C1178T:p.T393I"	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9625833	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	34	0	0	NA	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	0.9725109	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	159	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999629	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	28362148	12A2p6	cell line	sgMsh2	28362148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	39	0	0	NA	exonic	Plekhg2	synonymous SNV	"Plekhg2:NM_001083912:exon18:c.A2226G:p.Q742Q,Plekhg2:NM_001290542:exon18:c.A2226G:p.Q742Q,Plekhg2:NM_138752:exon18:c.A2229G:p.Q743Q"	7qA3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9787842	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr7	28509090	12A2p6	cell line	sgMsh2	28509090	G	A	SNV	Mutect2;Strelka2	2	0.332	21	0	0	NA	exonic	Ifnl2	synonymous SNV	Ifnl2:NM_001024673:exon4:c.C435T:p.S145S	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9466289	GGC	synonymous	GGC	9	GGCGGCGGC	NA
M1_p20	chr7	28546889	12A2p6	cell line	sgMsh2	28546889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	15	0	0	NA	exonic	Nccrp1	nonsynonymous SNV	Nccrp1:NM_001081115:exon1:c.G172A:p.V58I	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	9.92E-05	ACC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	54	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.99032	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	28840421	12A2p6	cell line	sgMsh2	28840421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	152	0	0	NA	exonic	Lgals4	nonsynonymous SNV	Lgals4:NM_010706:exon6:c.G521A:p.G174E	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999463	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	164	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999716	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	196	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999948	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	22	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9492516	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M1_p20	chr7	30122045	12A2p6	cell line	sgMsh2	30122045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	26	0	0	NA	exonic	Zfp382	synonymous SNV	"Zfp382:NM_001081007:exon1:c.G12A:p.P4P,Zfp382:NM_001362158:exon1:c.G12A:p.P4P"	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9585642	CGG	synonymous	NA	NA	NA	NA
M1_p20	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	122	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9997357	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr7	30728021	12A2p6	cell line	sgMsh2	30728021	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	141	0	0	NA	exonic	Tmem147	nonsynonymous SNV	Tmem147:NM_027215:exon6:c.A517T:p.M173L	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	0.85458915	1	0.9524199	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	41	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9808807	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	205	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999968	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	215	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M1_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	100	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9991507	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	83	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9979083	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	27	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	1	0.960623	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr7	35438384	12A2p6	cell line	sgMsh2	35438384	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	69	0	0	NA	exonic	Cep89	nonsynonymous SNV	Cep89:NM_028120:exon19:c.G2192T:p.R731M	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9956115	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	35487692	12A2p6	cell line	sgMsh2	35487692	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.425	26	0	0	NA	exonic	Tdrd12	frameshift deletion	Tdrd12:NM_001368387:exon16:c.1697delA:p.N566Tfs*14	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M1_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	94	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9988325	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M1_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	239	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	94	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	0.9988325	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	38522150	12A2p6	cell line	sgMsh2	38522150	C	T	SNV	Mutect2;Vardict	2	0.074	243	0	0	NA	exonic	Gm5591	nonsynonymous SNV	Gm5591:NM_001013810:exon2:c.G494A:p.G165E	7qB3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	0.345571569	3	0.9999994	TCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	684	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-23301111-42692961	3	2	1	0.9	4.202897461	NA	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr7	43355491	12A2p6	cell line	sgMsh2	43355491	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	59	0	0	NA	exonic	Siglecf	nonsynonymous SNV	"Siglecf:NM_001271019:exon7:c.G1144A:p.A382T,Siglecf:NM_145581:exon7:c.G1144A:p.A382T"	7qB3	chr7-42764293-44255116	4	3	1	0.9	4.202897461	NA	2	1	1	0.9925601	CGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	85	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-42764293-44255116	4	3	1	0.9	4.202897461	NA	1	1	1	0.9981186	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	156	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-42764293-44255116	4	3	1	0.9	4.202897461	NA	2	1	1	0.9999565	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	34	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	1	0.9725109	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	107	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9994142	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	24	0	0	NA	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9541331	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	136	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998743	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.625	9	0	0	NA	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	1	0.09625087	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	47	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9860236	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	131	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9998361	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	45712581	12A2p6	cell line	sgMsh2	45712581	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	18	0	0	NA	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon3:c.G431T:p.R144L,Sphk2:NM_020011:exon3:c.G431T:p.R144L,Sphk2:NM_203280:exon4:c.G431T:p.R144L"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	1	0.9379655	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	45862083	12A2p6	cell line	sgMsh2	45862083	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.572	8	0	0	NA	exonic	Grin2d	synonymous SNV	Grin2d:NM_008172:exon2:c.T937C:p.L313L	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	1	0.8980053	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	88	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9983952	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	68	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9953733	CCT	synonymous	CTG	8	CTGCTGCT	NA
M1_p20	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.357	67	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9951223	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.358	67	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9951223	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Vardict	2	0.444	8	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	2	1	1	0.8980053	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	105	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9993486	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	236	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9999994	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	87	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-44255553-62464086	3	2	1	0.9	4.202897461	NA	1	1	1	0.9983078	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	64268700	12A2p6	cell line	sgMsh2	64268700	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	329	0	0	NA	exonic	Trpm1	nonsynonymous SNV	Trpm1:NM_001039104:exon27:c.G4439C:p.W1480S	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	5.46E-09	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	66172255	12A2p6	cell line	sgMsh2	66172255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	88	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A2237G:p.H746R	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.70048291	2	0.8323228	CAC	nonsynonymous	CCA	8	CCACCACC	NA
M1_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	525	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	75579652	12A2p6	cell line	sgMsh2	75579652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	148	0	0	NA	exonic	Akap13	nonsynonymous SNV	Akap13:NM_029332:exon4:c.A332G:p.Q111R	7qD1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999335	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	267	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CAG	synonymous	AGA	8	AGAAGAAG	NA
M1_p20	chr7	79694871	12A2p6	cell line	sgMsh2	79694871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A4483G:p.I1495V	7qD2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	129	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.85458915	1	0.9474211	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	41	0	0	NA	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9808807	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	80367336	12A2p6	cell line	sgMsh2	80367336	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	176	0	0	NA	exonic	Man2a2	synonymous SNV	Man2a2:NM_172903:exon8:c.G984T:p.L328L	7qD2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.672463594	2	0.9984511	CCA	synonymous	NA	NA	NA	NA
M1_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	110	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	80759891	12A2p6	cell line	sgMsh2	80759891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	103	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon8:c.T695C:p.V232A	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	1	0.9992757	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	89	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	1	0.9984781	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	56	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9912867	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	284	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	4.96E-08	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	1	0.9933046	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	218	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999984	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.311	87	0	0	NA	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983078	GCA	synonymous	NA	NA	NA	NA
M1_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	196	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.70048291	2	0.9967623	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	85750887	12A2p6	cell line	sgMsh2	85750887	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	195	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.C938A:p.T313K	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999945	TGT	nonsynonymous	AATG	8	AATGAATG	NA
M1_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	588	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M1_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	179	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999872	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	549	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr7	86466026	12A2p6	cell line	sgMsh2	86466026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	541	0	0	NA	exonic	Olfr299	nonsynonymous SNV	Olfr299:NM_001011767:exon1:c.G614A:p.G205D	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.947986872	1	1.31E-09	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.367	141	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M1_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	634	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	86811375	12A2p6	cell line	sgMsh2	86811375	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	710	0	0	NA	exonic	Vmn2r77	synonymous SNV	Vmn2r77:NM_001105188:exon6:c.C1908A:p.S636S	7qD3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	261	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	TAA	synonymous	A	5	AAAAA	NA
M1_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATT	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr7	96823811	12A2p6	cell line	sgMsh2	96823811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	100	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon18:c.A2813G:p.D938G,Tenm4:NM_011858:exon18:c.A2702G:p.D901G,Tenm4:NM_001310762:exon19:c.A2810G:p.D937G"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9991507	GAC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr7	96848089	12A2p6	cell line	sgMsh2	96848089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	124	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon22:c.A3692G:p.K1231R,Tenm4:NM_011858:exon22:c.A3581G:p.K1194R,Tenm4:NM_001310762:exon23:c.A3689G:p.K1230R"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997624	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	207	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9998131	TCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	97487387	12A2p6	cell line	sgMsh2	97487387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	150	0	0	NA	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon3:c.A285G:p.S95S,Ints4:NM_027256:exon3:c.A285G:p.S95S"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.644444277	2	0.9985492	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	116	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996366	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	146	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.9940533	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	98467693	12A2p6	cell line	sgMsh2	98467693	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	110	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon14:c.G2712A:p.E904E	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995004	AGC	synonymous	TGAG	8	TGAGTGAG	NA
M1_p20	chr7	98715516	12A2p6	cell line	sgMsh2	98715516	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	371	0	0	NA	exonic	Thap12	nonsynonymous SNV	"Thap12:NM_028410:exon5:c.C890A:p.A297D,Thap12:NM_001355114:exon6:c.C377A:p.A126D"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.990015846	1	2.48E-09	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	48	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	88	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	2	1	1	0.9983952	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	89	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.639774391	2	0.9639744	CAG	synonymous	CAG	8	CAGCAGCA	NA
M1_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	59	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9925601	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	101504587	12A2p6	cell line	sgMsh2	101504587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	126	0	0	NA	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon17:c.T1340C:p.I447T,Pde2a:NM_001008548:exon18:c.T1361C:p.I454T,Pde2a:NM_001143848:exon18:c.T1373C:p.I458T,Pde2a:NM_001243757:exon18:c.T1304C:p.I435T,Pde2a:NM_001243758:exon18:c.T1391C:p.I464T"	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997863	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102113484	12A2p6	cell line	sgMsh2	102113484	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	33	0	0	NA	exonic	Chrna10	nonsynonymous SNV	Chrna10:NM_001081424:exon4:c.G498T:p.Q166H	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9710553	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102154007	12A2p6	cell line	sgMsh2	102154007	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	307	0	0	NA	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon16:c.C1985A:p.P662H,Nup98:NM_001287165:exon16:c.C1934A:p.P645H,Nup98:NM_001287166:exon16:c.C1934A:p.P645H,Nup98:NM_001287167:exon16:c.C1985A:p.P662H,Nup98:NM_022979:exon16:c.C1985A:p.P662H"	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	2.46E-08	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	151	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	213	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.803220404	1	0.5724714	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	143	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	0.9994433	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	203	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999964	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	198	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999953	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102714398	12A2p6	cell line	sgMsh2	102714398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	353	0	0	NA	exonic	Olfr33	nonsynonymous SNV	Olfr33:NM_147073:exon1:c.A14T:p.K5M	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	2.25E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	284	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	4.96E-08	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	103086140	12A2p6	cell line	sgMsh2	103086140	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	746	0	0	NA	exonic	Olfr584	synonymous SNV	Olfr584:NM_147054:exon1:c.C621T:p.L207L	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1	TCT	synonymous	NA	NA	NA	NA
M1_p20	chr7	103086318	12A2p6	cell line	sgMsh2	103086318	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	519	0	0	NA	exonic	Olfr584	nonsynonymous SNV	Olfr584:NM_147054:exon1:c.C799A:p.L267I	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	103155223	12A2p6	cell line	sgMsh2	103155223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	180	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A523G:p.I175V	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999878	ATG	nonsynonymous	TGATG	10	TGATGTGATG	NA
M1_p20	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	706	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	229	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999991	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	256	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr7	104159943	12A2p6	cell line	sgMsh2	104159943	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	188	0	0	NA	exonic	Olfm5	nonsynonymous SNV	Olfm5:NM_172905:exon5:c.T659G:p.L220R	7qE3	chr7-62476019-104249879	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999921	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	250	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	205	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999968	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	494	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	1.87E-09	TCC	synonymous	NA	NA	NA	NA
M1_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	862	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	118	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr7	105434067	12A2p6	cell line	sgMsh2	105434067	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.152	36	0	0	NA	exonic	Cckbr	nonsynonymous SNV	Cckbr:NM_007627:exon3:c.C476T:p.P159L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.709822682	1	0.619318	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	126	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1_p20	chr7	105763942	12A2p6	cell line	sgMsh2	105763942	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon7:c.A3468C:p.E1156D	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.960623	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	105764926	12A2p6	cell line	sgMsh2	105764926	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	158	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon6:c.C2681A:p.T894N	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9990608	AGT	nonsynonymous	ACAGT	10	ACAGTACAGT	NA
M1_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	259	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.9386471	1	0.9999767	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	352	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	2.31E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	234	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999993	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	107739253	12A2p6	cell line	sgMsh2	107739253	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	369	0	0	NA	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon18:c.G1600A:p.V534M,Ppfibp2:NM_001357437:exon19:c.G1819A:p.V607M,Ppfibp2:NM_001357436:exon20:c.G1852A:p.V618M,Ppfibp2:NM_001163557:exon21:c.G2050A:p.V684M,Ppfibp2:NM_008905:exon22:c.G2083A:p.V695M"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1.53E-09	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	937	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M1_p20	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	721	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1	AAA	synonymous	AATG	8	AATGAATG	NA
M1_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	330	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	5.23E-09	ATG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	171	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9998579	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	346	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	9.48E-09	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108317055	12A2p6	cell line	sgMsh2	108317055	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	281	0	0	NA	exonic	Olfr491	stopgain	Olfr491:NM_146736:exon1:c.C160T:p.Q54X	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	786	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108422769	12A2p6	cell line	sgMsh2	108422769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	785	0	0	NA	exonic	Olfr497	nonsynonymous SNV	Olfr497:NM_146738:exon1:c.T197C:p.L66P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	1.03E-09	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.217	544	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	109979464	12A2p6	cell line	sgMsh2	109979464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	223	0	0	NA	exonic	Tmem41b	synonymous SNV	Tmem41b:NM_153525:exon4:c.C387T:p.I129I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999988	GGA	synonymous	NA	NA	NA	NA
M1_p20	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	95	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9888701	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	112101759	12A2p6	cell line	sgMsh2	112101759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	195	0	0	NA	exonic	Usp47	nonsynonymous SNV	"Usp47:NM_133758:exon21:c.A3116C:p.K1039T,Usp47:NM_001357952:exon22:c.A3176C:p.K1059T,Usp47:NM_177249:exon22:c.A3176C:p.K1059T"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999945	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	135	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998675	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	614	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.9410976	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	163	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999691	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	220	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999985	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	311	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1.26E-08	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr7	122627780	12A2p6	cell line	sgMsh2	122627780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	106	0	0	NA	exonic	Prkcb	nonsynonymous SNV	Prkcb:NM_008855:exon17:c.A1988G:p.N663S	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993823	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	18	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9379655	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	125663440	12A2p6	cell line	sgMsh2	125663440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	226	0	0	NA	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon20:c.A3246G:p.L1082L	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999989	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	128	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.54637667	2	0.9993796	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	126496639	12A2p6	cell line	sgMsh2	126496639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	45	0	0	NA	exonic	Atxn2l	synonymous SNV	"Atxn2l:NM_001347658:exon11:c.T1065C:p.P355P,Atxn2l:NM_183020:exon11:c.T1323C:p.P441P"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9844822	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr7	126691768	12A2p6	cell line	sgMsh2	126691768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	60	0	0	NA	exonic	Slx1b	nonsynonymous SNV	Slx1b:NM_029420:exon5:c.G754A:p.E252K	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9929421	TCT	nonsynonymous	TCC	14	TCCTCTTCCTCCTC	NA
M1_p20	chr7	126699982	12A2p6	cell line	sgMsh2	126699982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	55	0	0	NA	exonic	Coro1a	nonsynonymous SNV	"Coro1a:NM_001301374:exon11:c.A1285G:p.T429A,Coro1a:NM_009898:exon11:c.A1285G:p.T429A"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.990816	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	45	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9844822	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	126878763	12A2p6	cell line	sgMsh2	126878763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	404	0	0	NA	exonic	Taok2	synonymous SNV	"Taok2:NM_001163774:exon8:c.A615G:p.K205K,Taok2:NM_001163775:exon8:c.A615G:p.K205K"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.705152796	2	0.999998	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr7	127092271	12A2p6	cell line	sgMsh2	127092271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	41	0	0	NA	exonic	AI467606	nonsynonymous SNV	AI467606:NM_178901:exon2:c.A17G:p.Q6R	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9808807	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	127610571	12A2p6	cell line	sgMsh2	127610571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	117	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.T2065A:p.F689I,Zfp629:NM_177226:exon3:c.T2065A:p.F689I,Zfp629:NM_001362197:exon4:c.T2065A:p.F689I"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996554	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	48	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.705152796	2	0.5012359	GGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.186	19	0	0	NA	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.868598809	1	0.8815177	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	39	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9787842	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	209	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.756521543	2	0.9343749	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Vardict	2	0.184	63	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9170343	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;MuSe;Vardict	3	0.085	187	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.396940316	3	0.9947307	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	61	0	0	NA	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9933046	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	162	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999684	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	145	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999221	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	185	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999907	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	131350824	12A2p6	cell line	sgMsh2	131350824	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	157	0	0	NA	exonic	2310057M21Rik	synonymous SNV	2310057M21Rik:NM_026655:exon5:c.C927T:p.N309N	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999588	CGT	synonymous	T	5	TTTTT	NA
M1_p20	chr7	132262789	12A2p6	cell line	sgMsh2	132262789	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	282	0	0	NA	exonic	Chst15	nonsynonymous SNV	"Chst15:NM_001360768:exon5:c.T1084C:p.Y362H,Chst15:NM_029935:exon5:c.T1084C:p.Y362H"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TAG	nonsynonymous	AGA	8	AGAAGAAG	NA
M1_p20	chr7	133937568	12A2p6	cell line	sgMsh2	133937568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	60	0	0	NA	exonic	Adam12	nonsynonymous SNV	Adam12:NM_007400:exon12:c.A1180G:p.S394G	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9929421	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	59	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.728502227	1	0.5025145	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	138876716	12A2p6	cell line	sgMsh2	138876716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	164	0	0	NA	exonic	Ppp2r2d	nonsynonymous SNV	"Ppp2r2d:NM_026391:exon8:c.A1081G:p.S361G,Ppp2r2d:NM_001347618:exon9:c.A586G:p.S196G"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9996969	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	266	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2667	75	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M1_p20	chr7	141272338	12A2p6	cell line	sgMsh2	141272338	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	241	0	0	NA	exonic	Cdhr5	synonymous SNV	"Cdhr5:NM_001114322:exon11:c.C1227T:p.S409S,Cdhr5:NM_028069:exon11:c.C1227T:p.S409S"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.999879	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr7	141357072	12A2p6	cell line	sgMsh2	141357072	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	127	0	0	NA	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon11:c.930delC:p.S313Rfs*43	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1_p20	chr7	141431835	12A2p6	cell line	sgMsh2	141431835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	36	0	0	NA	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon7:c.C491T:p.A164V,Slc25a22:NM_001360723:exon7:c.C491T:p.A164V,Slc25a22:NM_001360724:exon7:c.C251T:p.A84V,Slc25a22:NM_026646:exon7:c.C491T:p.A164V"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.9752117	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	137	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998808	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	141800273	12A2p6	cell line	sgMsh2	141800273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	312	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon21:c.A2605G:p.T869A	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	1.20E-08	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	144	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999178	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr7	141810047	12A2p6	cell line	sgMsh2	141810047	A	T	SNV	Mutect2;Strelka2	2	0.667	4	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon31:c.A7091T:p.N2364I	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	2	1	1	0.8744088	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	141849548	12A2p6	cell line	sgMsh2	141849548	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	150	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon18:c.C2245A:p.H749N	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9996603	CCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	141865305	12A2p6	cell line	sgMsh2	141865305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	113	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.T11987C:p.F3996S	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	0.574395986	2	0.9988247	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	48	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	53	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9897976	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	187	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999916	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	199	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999956	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr7	145268112	12A2p6	cell line	sgMsh2	145268112	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	0	0	NA	exonic	Tpcn2	nonsynonymous SNV	Tpcn2:NM_146206:exon10:c.C868A:p.L290M	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.202897461	NA	1	1	1	0.9982157	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	582	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.924637441	1	5.19E-09	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	181	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999885	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	720	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M1_p20	chr8	8681450	12A2p6	cell line	sgMsh2	8681450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	156	0	0	NA	exonic	Arglu1	nonsynonymous SNV	Arglu1:NM_176849:exon3:c.G585T:p.K195N	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999565	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	257	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999998	AAG	synonymous	NA	NA	NA	NA
M1_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	98	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9990557	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	324	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	6.81E-09	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	92	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9987019	TCG	synonymous	NA	NA	NA	NA
M1_p20	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	182	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999891	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	202	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999962	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	16002576	12A2p6	cell line	sgMsh2	16002576	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	281	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon43:c.G6547A:p.G2183R	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	299	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	2.29E-08	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.988057	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	19023522	12A2p6	cell line	sgMsh2	19023522	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	231	0	0	NA	exonic	Defb38	nonsynonymous SNV	Defb38:NM_183036:exon2:c.A134G:p.Y45C	8qA1.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	19228015	12A2p6	cell line	sgMsh2	19228015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	287	0	0	NA	exonic	Defb6	synonymous SNV	Defb6:NM_054074:exon2:c.T102C:p.Y34Y	8qA1.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.83123972	1	0.09681426	ATG	synonymous	NA	NA	NA	NA
M1_p20	chr8	21084450	12A2p6	cell line	sgMsh2	21084450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	204	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.A9G:p.T3T	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	3	1	1	0.9999966	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	122	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997357	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	22626792	12A2p6	cell line	sgMsh2	22626792	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	131	0	0	NA	exonic	Dkk4	synonymous SNV	Dkk4:NM_145592:exon4:c.G420A:p.Q140Q	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9998361	AGG	synonymous	CAGGA	10	CAGGACAGGA	NA
M1_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	292	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.915297669	1	0.9999402	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	323	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M1_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	65	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9945788	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	181	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.845249378	1	0.9443688	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	69	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.952656758	1	0.9882082	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	104	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9993131	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	149	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.999937	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	145	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.401610202	3	0.9604421	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	199	0	0	NA	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.947986872	1	0.999896	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	1172	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	43520415	12A2p6	cell line	sgMsh2	43520415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	982	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A1549G:p.M517V	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	709	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	212	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.756521543	2	0.9381571	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	45026524	12A2p6	cell line	sgMsh2	45026524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	288	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon9:c.T8537C:p.V2846A	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	4.03E-08	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	45342487	12A2p6	cell line	sgMsh2	45342487	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	105	0	0	NA	exonic	Fam149a	synonymous SNV	Fam149a:NM_153535:exon11:c.C1986T:p.S662S	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9993486	GGG	synonymous	NA	NA	NA	NA
M1_p20	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	221	0	0	NA	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.966666416	1	0.999987	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	148	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999335	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	110	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M1_p20	chr8	47542785	12A2p6	cell line	sgMsh2	47542785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	182	0	0	NA	exonic	Rwdd4a	nonsynonymous SNV	Rwdd4a:NM_203507:exon3:c.T199C:p.F67L	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999891	CTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr8	48235575	12A2p6	cell line	sgMsh2	48235575	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	270	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon25:c.G6928T:p.G2310W,Tenm3:NM_011857:exon27:c.G6976T:p.G2326W"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	1	0.9999997	CCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	147	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.709822682	2	0.9688845	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	224	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999988	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	178	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999865	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	186	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.999355619	1	0.9999908	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	186	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999912	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	58472973	12A2p6	cell line	sgMsh2	58472973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	120	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon3:c.A257C:p.E86A	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997061	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	229	0	0	NA	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.980676074	1	0.9999965	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	43	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9827736	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	185	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999907	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	283	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	69870630	12A2p6	cell line	sgMsh2	69870630	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	187	0	0	NA	exonic	Pbx4	synonymous SNV	"Pbx4:NM_001357308:exon6:c.G456A:p.L152L,Pbx4:NM_001024954:exon7:c.G990A:p.L330L"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999916	TGC	synonymous	NA	NA	NA	NA
M1_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	131	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9998361	CGA	synonymous	NA	NA	NA	NA
M1_p20	chr8	69911801	12A2p6	cell line	sgMsh2	69911801	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	59	0	0	NA	exonic	Gatad2a	nonsynonymous SNV	Gatad2a:NM_001286450:exon12:c.A1585G:p.T529A	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.933977214	1	0.9760116	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	121	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997213	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	70331475	12A2p6	cell line	sgMsh2	70331475	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	139	0	0	NA	exonic	Gdf1	stoploss	"Gdf1:NM_008107:exon2:c.T1072G:p.X358G,Gdf1:NM_001163282:exon8:c.T1072G:p.X358G"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9998928	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	126	0	0	NA	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9997863	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	266	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.681803366	2	0.9999508	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	124	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.999355619	1	0.9997565	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M1_p20	chr8	72483927	12A2p6	cell line	sgMsh2	72483927	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	58	0	0	NA	exonic	Slc35e1	nonsynonymous SNV	Slc35e1:NM_177766:exon6:c.A1069T:p.S357C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9921576	CTG	nonsynonymous	CTG	8	CTGCTGCT	NA
M1_p20	chr8	72495678	12A2p6	cell line	sgMsh2	72495678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1576G:p.T526A	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9998808	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	71	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.990015846	1	0.9951041	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	153	0	0	NA	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.999949	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	79175953	12A2p6	cell line	sgMsh2	79175953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	171	0	0	NA	exonic	Zfp827	nonsynonymous SNV	"Zfp827:NM_001294279:exon9:c.A2495G:p.H832R,Zfp827:NM_178267:exon9:c.A2495G:p.H832R"	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999804	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	79663746	12A2p6	cell line	sgMsh2	79663746	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	157	0	0	NA	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon12:c.G984A:p.K328K,Otud4:NM_001256033:exon12:c.G987A:p.K329K"	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999588	AGC	synonymous	NA	NA	NA	NA
M1_p20	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	179	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.868598809	1	0.9836029	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	83269168	12A2p6	cell line	sgMsh2	83269168	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	141	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon17:c.A2300C:p.N767T,Tbc1d9:NM_001111304:exon20:c.A2999C:p.N1000T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.85458915	1	0.9524199	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	157	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.873268695	1	0.982551	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M1_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	262	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.971336302	1	0.9999985	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	84867549	12A2p6	cell line	sgMsh2	84867549	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	36	0	0	NA	exonic	Farsa	synonymous SNV	Farsa:NM_025648:exon9:c.C927A:p.G309G	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.691143138	1	0.00058995	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	66	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9948577	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	213	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.784540859	2	0.7152491	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	58	0	0	NA	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.826569834	1	0.8549264	TTT	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr8	90248274	12A2p6	cell line	sgMsh2	90248274	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	54	0	0	NA	exonic	Tox3	stoploss	Tox3:NM_172913:exon7:c.A1728C:p.X576Y	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.990015846	1	0.9886105	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	490	0	0	NA	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	1.00E-09	ATC	synonymous	NA	NA	NA	NA
M1_p20	chr8	91800796	12A2p6	cell line	sgMsh2	91800796	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.176	22	0	0	NA	exonic	Irx3	synonymous SNV	"Irx3:NM_001253822:exon2:c.C279T:p.G93G,Irx3:NM_008393:exon2:c.C279T:p.G93G"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.821899948	1	0.8497867	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr8	92981967	12A2p6	cell line	sgMsh2	92981967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	323	0	0	NA	exonic	Slc6a2	nonsynonymous SNV	Slc6a2:NM_009209:exon4:c.T710C:p.L237P	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	7.13E-09	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
M1_p20	chr8	93319882	12A2p6	cell line	sgMsh2	93319882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	570	0	0	NA	exonic	Ces1g	nonsynonymous SNV	Ces1g:NM_021456:exon9:c.G1014T:p.K338N	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	189	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999925	CAA	synonymous	NA	NA	NA	NA
M1_p20	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	80	0	0	NA	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.915297669	1	0.9809717	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	78	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9972741	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	108	0	0	NA	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.429629518	3	5.82E-06	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	103	0	0	NA	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9992757	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	609	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	229	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999991	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	77	0	0	NA	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9971258	TCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	104526304	12A2p6	cell line	sgMsh2	104526304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	144	0	0	NA	exonic	Nae1	nonsynonymous SNV	Nae1:NM_144931:exon7:c.A487G:p.R163G	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999178	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	164	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.630434619	2	0.9996676	CTT	synonymous	NA	NA	NA	NA
M1_p20	chr8	104618259	12A2p6	cell line	sgMsh2	104618259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	477	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon10:c.C1223T:p.T408I,Cdh16:NM_001252628:exon11:c.C1313T:p.T438I,Cdh16:NM_007663:exon11:c.C1313T:p.T438I"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	882	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1	GAC	synonymous	NA	NA	NA	NA
M1_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	126	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9997863	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	105	0	0	NA	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9993486	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	238	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.910627783	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	264	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999999	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	257	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.929307328	1	0.9999482	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	192	0	0	NA	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.924637441	1	0.9994708	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	162	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999684	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr8	106131579	12A2p6	cell line	sgMsh2	106131579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	219	0	0	NA	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon15:c.C2069T:p.A690V	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999985	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.177	22	0	0	NA	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.826569834	1	0.8537516	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	161	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.929307328	1	0.9989302	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	107183583	12A2p6	cell line	sgMsh2	107183583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	exonic	Cyb5b	nonsynonymous SNV	Cyb5b:NM_025558:exon5:c.G356T:p.W119L	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999902	TGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	94	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.667793708	2	0.9409326	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	105	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9993486	GAG	synonymous	NA	NA	NA	NA
M1_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	222	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	1	0.9999965	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M1_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	522	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M1_p20	chr8	109954634	12A2p6	cell line	sgMsh2	109954634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	28	0	0	NA	exonic	Marveld3	nonsynonymous SNV	Marveld3:NM_028584:exon3:c.A628G:p.I210V	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9625833	ATC	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr8	110365407	12A2p6	cell line	sgMsh2	110365407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	207	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon10:c.A1211G:p.K404R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.919967555	1	0.9995477	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	290	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.877938581	1	0.9982851	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	92	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9987019	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr8	110859934	12A2p6	cell line	sgMsh2	110859934	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	95	0	0	NA	exonic	Cog4	nonsynonymous SNV	"Cog4:NM_001310607:exon8:c.A820T:p.I274F,Cog4:NM_133973:exon8:c.A1039T:p.I347F"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9988928	AAT	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	215	0	0	NA	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.873268695	1	0.9923809	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	246	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	79	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9974147	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	113637832	12A2p6	cell line	sgMsh2	113637832	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	46	0	0	NA	exonic	Mon1b	synonymous SNV	"Mon1b:NM_173015:exon2:c.C240T:p.A80A,Mon1b:NM_001048143:exon3:c.C240T:p.A80A"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9852728	CCT	synonymous	GCA	8	GCAGCAGC	NA
M1_p20	chr8	114236685	12A2p6	cell line	sgMsh2	114236685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	201	0	0	NA	exonic	Vat1l	nonsynonymous SNV	Vat1l:NM_173016:exon3:c.T460G:p.S154A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.779870973	2	0.7419401	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9991507	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	122271117	12A2p6	cell line	sgMsh2	122271117	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	37	0	0	NA	exonic	Zfp469	nonsynonymous SNV	Zfp469:NM_001362883:exon3:c.C11051G:p.A3684G	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.583735758	2	0.007683472	GCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	122360632	12A2p6	cell line	sgMsh2	122360632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	195	0	0	NA	exonic	Trhr2	nonsynonymous SNV	Trhr2:NM_133202:exon2:c.T68C:p.V23A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999945	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	107	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9994142	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M1_p20	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	85	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9981186	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	136	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9998743	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	122585029	12A2p6	cell line	sgMsh2	122585029	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.349	25	0	0	NA	exonic	Galns	nonsynonymous SNV	"Galns:NM_001193645:exon10:c.C1001T:p.T334I,Galns:NM_016722:exon12:c.C1241T:p.T414I"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9564025	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9983078	GGC	synonymous	NA	NA	NA	NA
M1_p20	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.211	20	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.98534596	1	0.9389494	TTG	synonymous	NA	NA	NA	NA
M1_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	257	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999998	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M1_p20	chr8	123487375	12A2p6	cell line	sgMsh2	123487375	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	459	0	0	NA	exonic	Afg3l1	nonsynonymous SNV	Afg3l1:NM_054070:exon6:c.T554G:p.V185G	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	127	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9997973	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	173	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	0.565056214	2	0.9999803	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9999902	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.304	144	0	0	NA	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	2	1	1	0.9999178	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	124897101	12A2p6	cell line	sgMsh2	124897101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	40	0	0	NA	exonic	Exoc8	nonsynonymous SNV	Exoc8:NM_198103:exon1:c.T526C:p.Y176H	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	3	1	1	0.9798591	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	63	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.202897461	NA	1	1	1	0.9939751	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	111	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9995262	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	410	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.06E-09	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	191	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.9386471	1	0.9997587	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	271	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	ATG	synonymous	GAT	8	GATGATGA	NA
M1_p20	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	77	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9971258	TCA	synonymous	NA	NA	NA	NA
M1_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	382	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.27E-09	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	7348756	12A2p6	cell line	sgMsh2	7348756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	221	0	0	NA	exonic	Mmp12	nonsynonymous SNV	"Mmp12:NM_001320076:exon2:c.T127C:p.C43R,Mmp12:NM_008605:exon2:c.T286C:p.C96R,Mmp12:NM_001320077:exon3:c.T76C:p.C26R"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999986	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	7572030	12A2p6	cell line	sgMsh2	7572030	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	168	0	0	NA	exonic	Mmp27	nonsynonymous SNV	Mmp27:NM_001310717:exon2:c.T230A:p.L77H	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.999977	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	8649457	12A2p6	cell line	sgMsh2	8649457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	217	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.T1667C:p.I556T	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999983	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	14751356	12A2p6	cell line	sgMsh2	14751356	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	87	0	0	NA	exonic	Fut4	nonsynonymous SNV	Fut4:NM_010242:exon1:c.A641C:p.K214T	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9983078	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.204	138	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.952656758	1	0.9991723	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	174	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.821899948	1	0.82517	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	161	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M1_p20	chr9	18857019	12A2p6	cell line	sgMsh2	18857019	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	405	0	0	NA	exonic	Olfr829	synonymous SNV	Olfr829:NM_147067:exon1:c.C393A:p.R131R	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.08E-09	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	19036033	12A2p6	cell line	sgMsh2	19036033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	121	0	0	NA	exonic	Olfr835	nonsynonymous SNV	Olfr835:NM_001012266:exon1:c.A909T:p.K303N	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997213	AAT	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	267	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	TAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	90	0	0	NA	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9985566	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	104	0	0	NA	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993131	CAA	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr9	21309648	12A2p6	cell line	sgMsh2	21309648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	80	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon2:c.A187C:p.S63R,Ap1m2:NM_009678:exon2:c.A187C:p.S63R"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.997548	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	21341973	12A2p6	cell line	sgMsh2	21341973	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	129	0	0	NA	exonic	Slc44a2	synonymous SNV	"Slc44a2:NM_001199186:exon4:c.C189T:p.Y63Y,Slc44a2:NM_001359227:exon4:c.C189T:p.Y63Y,Slc44a2:NM_152808:exon4:c.C195T:p.Y65Y"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998178	ACC	synonymous	NA	NA	NA	NA
M1_p20	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	103	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.98534596	1	0.9988529	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	21592072	12A2p6	cell line	sgMsh2	21592072	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	107	0	0	NA	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon2:c.G178A:p.D60N,Yipf2:NM_138303:exon2:c.G178A:p.D60N,Yipf2:NM_001205157:exon3:c.G178A:p.D60N,Yipf2:NM_001205158:exon3:c.G178A:p.D60N,Yipf2:NM_001359299:exon3:c.G178A:p.D60N"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994142	TCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	91	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9986312	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	46	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9852728	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M1_p20	chr9	26844298	12A2p6	cell line	sgMsh2	26844298	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	166	0	0	NA	exonic	Glb1l3	synonymous SNV	Glb1l3:NM_001113323:exon9:c.T789C:p.T263T	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.424959632	3	0.8651108	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr9	26975734	12A2p6	cell line	sgMsh2	26975734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	159	0	0	NA	exonic	Acad8	nonsynonymous SNV	Acad8:NM_025862:exon11:c.A1216G:p.I406V	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999629	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	209	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.910627783	1	0.9992259	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	27082497	12A2p6	cell line	sgMsh2	27082497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	278	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A652G:p.S218G,Ncapd3:NM_178113:exon26:c.A3178G:p.S1060G"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	127	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997973	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M1_p20	chr9	27323243	12A2p6	cell line	sgMsh2	27323243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	148	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon11:c.T1403C:p.L468P,Igsf9b:NM_001384263:exon11:c.T1403C:p.L468P,Igsf9b:NM_001384264:exon11:c.T1403C:p.L468P"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999335	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.137	41	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.639774391	2	0.6365977	TCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	30429240	12A2p6	cell line	sgMsh2	30429240	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	121	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon1:c.C1673T:p.T558I	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997213	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	118	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9996732	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	106	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993823	CGC	synonymous	NA	NA	NA	NA
M1_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	524	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.905957897	1	0.9999995	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	44	0	0	NA	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.982463	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	409	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	1.06E-09	AGG	synonymous	NA	NA	NA	NA
M1_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	66	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9948577	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	37544088	12A2p6	cell line	sgMsh2	37544088	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	89	0	0	NA	exonic	Vsig2	synonymous SNV	Vsig2:NM_020518:exon7:c.T933G:p.S311S	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9984781	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	185	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999907	TAT	synonymous	NA	NA	NA	NA
M1_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	467	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr9	37992995	12A2p6	cell line	sgMsh2	37992995	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	671	0	0	NA	exonic	Olfr881	nonsynonymous SNV	Olfr881:NM_146418:exon1:c.G502A:p.V168I	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	1	GGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	108	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M1_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	245	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	38109488	12A2p6	cell line	sgMsh2	38109488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	422	0	0	NA	exonic	Olfr888	synonymous SNV	Olfr888:NM_146424:exon1:c.T801C:p.S267S	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.03E-09	CTA	synonymous	NA	NA	NA	NA
M1_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	730	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	576	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
M1_p20	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	373	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.43E-09	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	38815900	12A2p6	cell line	sgMsh2	38815900	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	511	0	0	NA	exonic	Olfr922	synonymous SNV	Olfr922:NM_146781:exon1:c.C396T:p.Y132Y	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M1_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	297	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.779870973	2	0.9169421	GCA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	485	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	286	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.9999995	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	297	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	2.54E-08	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	246	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	493	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	326	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.849919264	1	0.9845375	CTG	synonymous	NA	NA	NA	NA
M1_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	464	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.957326644	1	2.44E-09	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	39819724	12A2p6	cell line	sgMsh2	39819724	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	185	0	0	NA	exonic	Olfr970	synonymous SNV	Olfr970:NM_146611:exon1:c.C84T:p.F28F	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.663123822	2	0.999399	TCC	synonymous	TCC	8	TCCTCCTC	NA
M1_p20	chr9	39910334	12A2p6	cell line	sgMsh2	39910334	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.187	179	0	0	NA	exonic	Olfr229	frameshift insertion	Olfr229:NM_146613:exon1:c.531dupT:p.C179Lfs*1	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.873268695	NA	NA	TAT	frameshift	T	5	TTTTT	1
M1_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	63	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9939751	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	136	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998743	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M1_p20	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	54	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.99032	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	146	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.541706784	2	0.9996289	CAG	synonymous	NA	NA	NA	NA
M1_p20	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	93	0	0	NA	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987689	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	44105221	12A2p6	cell line	sgMsh2	44105221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	75	0	0	NA	exonic	Mfrp	synonymous SNV	"Mfrp:NM_001190314:exon10:c.G1212T:p.T404T,Mfrp:NM_147126:exon10:c.G1212T:p.T404T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9968049	CGG	synonymous	NA	NA	NA	NA
M1_p20	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	11	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9121814	ACG	synonymous	NA	NA	NA	NA
M1_p20	chr9	44402367	12A2p6	cell line	sgMsh2	44402367	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	104	0	0	NA	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.T1189G:p.F397V,Slc37a4:NM_001293630:exon9:c.T1189G:p.F397V,Slc37a4:NM_001293631:exon9:c.T1189G:p.F397V,Slc37a4:NM_001378830:exon9:c.T1189G:p.F397V,Slc37a4:NM_001378834:exon9:c.T1102G:p.F368V,Slc37a4:NM_001357729:exon10:c.T1252G:p.F418V,Slc37a4:NM_001357730:exon10:c.T1252G:p.F418V,Slc37a4:NM_001378829:exon10:c.T1252G:p.F418V,Slc37a4:NM_001378831:exon10:c.T1165G:p.F389V,Slc37a4:NM_001378832:exon10:c.T1165G:p.F389V,Slc37a4:NM_001378833:exon10:c.T1165G:p.F389V"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9993131	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	44402403	12A2p6	cell line	sgMsh2	44402403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	84	0	0	NA	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.G1225A:p.V409I,Slc37a4:NM_001293630:exon9:c.G1225A:p.V409I,Slc37a4:NM_001293631:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378830:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378834:exon9:c.G1138A:p.V380I,Slc37a4:NM_001357729:exon10:c.G1288A:p.V430I,Slc37a4:NM_001357730:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378829:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378831:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378832:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378833:exon10:c.G1201A:p.V401I"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9980162	AGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.523	169	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M1_p20	chr9	44500808	12A2p6	cell line	sgMsh2	44500808	C	-	Deletion	Mutect2;Vardict	2	0.279	46	0	0	NA	exonic	Bcl9l	frameshift deletion	Bcl9l:NM_030256:exon3:c.90delC:p.P32Lfs*12	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M1_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	39	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.966666416	1	0.968788	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	44796345	12A2p6	cell line	sgMsh2	44796345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	70	0	0	NA	exonic	Tmem25	nonsynonymous SNV	"Tmem25:NM_001357385:exon3:c.A652C:p.S218R,Tmem25:NM_001357386:exon3:c.A652C:p.S218R,Tmem25:NM_001357383:exon4:c.A724C:p.S242R,Tmem25:NM_001357384:exon4:c.A652C:p.S218R,Tmem25:NM_027865:exon4:c.A652C:p.S218R"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9958375	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	93	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9987689	TGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	45919870	12A2p6	cell line	sgMsh2	45919870	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	161	0	0	NA	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon12:c.C1507T:p.H503Y,Pcsk7:NM_008794:exon12:c.C1507T:p.H503Y"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	CCA	nonsynonymous	C	5	CCCCC	NA
M1_p20	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	86	0	0	NA	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.901288011	1	0.976773	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr9	46230167	12A2p6	cell line	sgMsh2	46230167	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	40	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.C560T:p.A187V	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.9785396	GCG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	58	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9921576	GAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	388	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.19E-09	TTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	52120331	12A2p6	cell line	sgMsh2	52120331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	224	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon4:c.G1034A:p.R345H,Zc3h12c:NM_001368810:exon4:c.G977A:p.R326H"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.887278353	1	0.9974171	ACG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	302	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9921354	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	147	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999299	CAT	synonymous	NA	NA	NA	NA
M1_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.046	692	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.214814759	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	305	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.69E-08	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M1_p20	chr9	56898498	12A2p6	cell line	sgMsh2	56898498	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	95	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon10:c.G6592A:p.V2198I	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988928	CGT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	37	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9764633	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	57592356	12A2p6	cell line	sgMsh2	57592356	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	133	0	0	NA	exonic	Ulk3	nonsynonymous SNV	Ulk3:NM_027895:exon6:c.T639G:p.F213L	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998526	TTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	166	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9952395	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	160	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M1_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	195	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999945	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	161	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999667	GGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	174	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.728502227	2	0.9677844	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	61927590	12A2p6	cell line	sgMsh2	61927590	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	221	0	0	NA	exonic	Kif23	nonsynonymous SNV	Kif23:NM_024245:exon11:c.G1116T:p.E372D	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.994685732	1	0.999998	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	99	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.747181771	2	0.6486597	GAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	62919463	12A2p6	cell line	sgMsh2	62919463	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	143	0	0	NA	exonic	Pias1	frameshift deletion	Pias1:NM_019663:exon6:c.716delA:p.N239Tfs*46	9qB	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chr9	64308385	12A2p6	cell line	sgMsh2	64308385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	184	0	0	NA	exonic	Dis3l	nonsynonymous SNV	"Dis3l:NM_001001295:exon15:c.A2576G:p.Q859R,Dis3l:NM_001177784:exon15:c.A2327G:p.Q776R,Dis3l:NM_172519:exon15:c.A2327G:p.Q776R"	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999902	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	64728343	12A2p6	cell line	sgMsh2	64728343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	117	0	0	NA	exonic	Rab11a	nonsynonymous SNV	Rab11a:NM_017382:exon2:c.A127G:p.T43A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996554	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	64912729	12A2p6	cell line	sgMsh2	64912729	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	23	0	0	NA	exonic	Dennd4a	nonsynonymous SNV	Dennd4a:NM_001162917:exon34:c.A5462C:p.N1821T	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9517512	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	423	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.03E-09	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	258	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
M1_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	130	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9998272	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M1_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	408	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.07E-09	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	39	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.924637441	1	0.9495753	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	77	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9971258	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	71215941	12A2p6	cell line	sgMsh2	71215941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	33	0	0	NA	exonic	Aldh1a2	nonsynonymous SNV	Aldh1a2:NM_009022:exon1:c.A95G:p.N32S	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9710553	AAC	nonsynonymous	CGCCCA	12	CGCCCACGCCCA	NA
M1_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	57	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9917335	GTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	72618070	12A2p6	cell line	sgMsh2	72618070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	254	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A2541G:p.I847M	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	72619274	12A2p6	cell line	sgMsh2	72619274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	204	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A3745G:p.T1249A	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.649114163	2	0.999902	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	150	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999402	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	196	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999948	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	152	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	AAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	73931296	12A2p6	cell line	sgMsh2	73931296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	320	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.A2272G:p.S758G	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.999355619	1	8.65E-09	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	73933313	12A2p6	cell line	sgMsh2	73933313	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	139	0	0	NA	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.C255T:p.D85D	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9982444	AGT	synonymous	NA	NA	NA	NA
M1_p20	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.136	92	0	0	NA	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.635104505	2	0.9730845	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	264	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	291	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	3.45E-08	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	199	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999956	TTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	181	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999885	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr9	79651469	12A2p6	cell line	sgMsh2	79651469	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	119	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon34:c.C5713A:p.L1905M	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9996901	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	79819645	12A2p6	cell line	sgMsh2	79819645	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	207	0	0	NA	exonic	Filip1	frameshift deletion	"Filip1:NM_001357354:exon2:c.947delA:p.K316Rfs*4,Filip1:NM_001081243:exon5:c.1691delA:p.K564Rfs*4,Filip1:NM_001357352:exon5:c.1736delA:p.K579Rfs*4,Filip1:NM_001357353:exon5:c.1691delA:p.K564Rfs*4"	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M1_p20	chr9	81632326	12A2p6	cell line	sgMsh2	81632326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	153	0	0	NA	exonic	Htr1b	nonsynonymous SNV	Htr1b:NM_010482:exon2:c.T227C:p.L76P	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.999949	TAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	207	0	0	NA	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999971	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	276	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.840579492	1	0.9526145	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	86550146	12A2p6	cell line	sgMsh2	86550146	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	168	0	0	NA	exonic	Dop1a	frameshift deletion	Dop1a:NM_177208:exon37:c.6932delA:p.N2312Ifs*21	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	148	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.784540859	2	0.525624	TAG	synonymous	NA	NA	NA	NA
M1_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	71	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9960519	TTT	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr9	88463127	12A2p6	cell line	sgMsh2	88463127	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	67	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.C542A:p.P181H,Syncrip:NM_001284328:exon8:c.C836A:p.P279H,Syncrip:NM_019666:exon8:c.C836A:p.P279H,Syncrip:NM_019796:exon8:c.C836A:p.P279H"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9951223	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	117	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.728502227	2	0.8469756	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	103	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.8886501	GAA	nonsynonymous	T	5	TTTTT	NA
M1_p20	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Vardict	2	0.28	133	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M1_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	231	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999992	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	209	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999974	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	55	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M1_p20	chr9	99642569	12A2p6	cell line	sgMsh2	99642569	A	-	Deletion	Strelka2;Vardict	2	0.2899	138	0	0	NA	exonic	Dzip1l	frameshift deletion	"Dzip1l:NM_001311142:exon5:c.742delA:p.K250Sfs*16,Dzip1l:NM_028258:exon5:c.742delA:p.K250Sfs*16"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M1_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	398	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.11E-09	GAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	56	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9912867	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	57	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9917335	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	101102029	12A2p6	cell line	sgMsh2	101102029	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	171	0	0	NA	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T1601C:p.I534T,Msl2:NM_001379344:exon3:c.T1379C:p.I460T"	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9999804	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	377	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.35E-09	AAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	105295473	12A2p6	cell line	sgMsh2	105295473	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.178	30	0	0	NA	exonic	Nek11	nonsynonymous SNV	Nek11:NM_172461:exon10:c.A986G:p.Q329R	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.83123972	1	0.859361	CTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	105300134	12A2p6	cell line	sgMsh2	105300134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	156	0	0	NA	exonic	Nek11	synonymous SNV	Nek11:NM_172461:exon8:c.G807A:p.L269L	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999565	TCA	synonymous	NA	NA	NA	NA
M1_p20	chr9	105715324	12A2p6	cell line	sgMsh2	105715324	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.344	173	0	0	NA	exonic	Col6a6	frameshift deletion	Col6a6:NM_001102607:exon30:c.5185delT:p.S1729Pfs*46	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	188	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.971336302	1	0.9999589	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	157	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.644444277	2	0.9990144	CAA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	52	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9892472	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	38	0	0	NA	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9776532	GCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	73	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9964482	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	107257132	12A2p6	cell line	sgMsh2	107257132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	378	0	0	NA	exonic	Mapkapk3	nonsynonymous SNV	"Mapkapk3:NM_001316691:exon7:c.T721C:p.W241R,Mapkapk3:NM_178907:exon10:c.T932C:p.V311A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.784540859	2	0.9525095	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	100	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9991507	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	114	0	0	NA	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.919967555	1	0.9935174	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	107907764	12A2p6	cell line	sgMsh2	107907764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	152	0	0	NA	exonic	Mst1r	nonsynonymous SNV	Mst1r:NM_009074:exon1:c.A620G:p.E207G	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	108050857	12A2p6	cell line	sgMsh2	108050857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	126	0	0	NA	exonic	Gmppb	nonsynonymous SNV	"Gmppb:NM_177910:exon7:c.A649G:p.M217V,Gmppb:NM_001357682:exon8:c.A649G:p.M217V"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997863	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M1_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	169	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.96199653	1	0.9998456	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	108053855	12A2p6	cell line	sgMsh2	108053855	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	140	0	0	NA	exonic	Amigo3	nonsynonymous SNV	Amigo3:NM_177275:exon1:c.T476A:p.L159H	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9998984	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	109	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9994732	CTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	121	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M1_p20	chr9	108513106	12A2p6	cell line	sgMsh2	108513106	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	244	0	0	NA	exonic	Qars	nonsynonymous SNV	Qars:NM_133794:exon14:c.T1205G:p.L402R	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	50	0	0	NA	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.933977214	1	0.9679911	CCT	synonymous	NA	NA	NA	NA
M1_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	95	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9988928	TAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	93	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.621094847	2	0.9827282	GTG	synonymous	NA	NA	NA	NA
M1_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	81	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9976745	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	109090926	12A2p6	cell line	sgMsh2	109090926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	59	0	0	NA	exonic	Ccdc51	nonsynonymous SNV	Ccdc51:NM_025689:exon3:c.T389C:p.V130A	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9925601	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	109100567	12A2p6	cell line	sgMsh2	109100567	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	48	0	0	NA	exonic	Plxnb1	nonsynonymous SNV	Plxnb1:NM_172775:exon3:c.C490T:p.P164S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9867368	GCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	110086987	12A2p6	cell line	sgMsh2	110086987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	136	0	0	NA	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon10:c.A2142G:p.Q714Q,Dhx30:NM_133347:exon13:c.A2124G:p.Q708Q,Dhx30:NM_001252682:exon14:c.A2055G:p.Q685Q"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.667793708	2	0.9917718	GTT	synonymous	NA	NA	NA	NA
M1_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	266	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999999	GCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	206	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.896618125	1	0.9979862	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M1_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	103	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9992757	ATA	synonymous	NA	NA	NA	NA
M1_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	48	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9867368	GGA	nonsynonymous	G	5	GGGGG	NA
M1_p20	chr9	110727971	12A2p6	cell line	sgMsh2	110727971	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	151	0	0	NA	exonic	Pth1r	stopgain	"Pth1r:NM_001083936:exon4:c.C351A:p.C117X,Pth1r:NM_001083935:exon5:c.C351A:p.C117X,Pth1r:NM_011199:exon6:c.C351A:p.C117X"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999433	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	113903852	12A2p6	cell line	sgMsh2	113903852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	195	0	0	NA	exonic	Clasp2	nonsynonymous SNV	"Clasp2:NM_029633:exon27:c.T2755C:p.Y919H,Clasp2:NM_001286600:exon29:c.T2809C:p.Y937H"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999945	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	31	0	0	NA	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9679165	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	106	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.835909606	1	0.8895579	ATC	nonsynonymous	A	5	AAAAA	NA
M1_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	307	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.53E-08	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	87	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	2	1	1	0.9983078	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	119493064	12A2p6	cell line	sgMsh2	119493064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	89	0	0	NA	exonic	Scn5a	synonymous SNV	"Scn5a:NM_001253860:exon23:c.A4305G:p.R1435R,Scn5a:NM_021544:exon24:c.A4305G:p.R1435R"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9984781	CTC	synonymous	NA	NA	NA	NA
M1_p20	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	120	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9997061	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M1_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.859259037	1	0.9162559	CCC	synonymous	NA	NA	NA	NA
M1_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	152	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999463	GAT	synonymous	NA	NA	NA	NA
M1_p20	chr9	123011604	12A2p6	cell line	sgMsh2	123011604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	146	0	0	NA	exonic	Kif15	nonsynonymous SNV	Kif15:NM_010620:exon30:c.A3662G:p.Q1221R	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	0.597745417	2	0.9997693	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	142	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.9999086	CAC	synonymous	NA	NA	NA	NA
M1_p20	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	153	0	0	NA	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	0.999949	ATA	nonsynonymous	NA	NA	NA	NA
M1_p20	chr9	124125198	12A2p6	cell line	sgMsh2	124125198	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	366	0	0	NA	exonic	Ccr5	nonsynonymous SNV	Ccr5:NM_009917:exon2:c.G837T:p.Q279H	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.202897461	NA	1	1	1	1.63E-09	AGG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	21	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M1_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	84	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	90	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	7728748	12A2p6	cell line	sgMsh2	7728748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	88	0	0	NA	exonic	Praf2	synonymous SNV	Praf2:NM_138602:exon1:c.T165C:p.S55S	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTC	synonymous	NA	NA	NA	NA
M1_p20	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	52	0	0	NA	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M1_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	226	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	13290320	12A2p6	cell line	sgMsh2	13290320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	57	0	0	NA	exonic	Ddx3x	nonsynonymous SNV	Ddx3x:NM_010028:exon13:c.A1457G:p.Q486R	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	181	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	18264114	12A2p6	cell line	sgMsh2	18264114	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.479	97	0	0	NA	exonic	Kdm6a	frameshift deletion	"Kdm6a:NM_001310444:exon22:c.3238delA:p.T1081Pfs*21,Kdm6a:NM_009483:exon22:c.3238delA:p.T1081Pfs*22"	XqA1.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAA	frameshift	NA	NA	NA	-1
M1_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	266	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	43592724	12A2p6	cell line	sgMsh2	43592724	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.464	34	0	0	NA	exonic	Tex13c1	frameshift insertion	Tex13c1:NM_001195271:exon1:c.1566dupA:p.C524Mfs*1	XqA4	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGA	frameshift	NA	NA	NA	1
M1_p20	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.609	37	0	0	NA	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	57248988	12A2p6	cell line	sgMsh2	57248988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	188	0	0	NA	exonic	Arhgef6	nonsynonymous SNV	"Arhgef6:NM_001358573:exon11:c.T905C:p.V302A,Arhgef6:NM_152801:exon12:c.T1436C:p.V479A"	XqA6	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	64	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	64177640	12A2p6	cell line	sgMsh2	64177640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	23	0	0	NA	exonic	3830417A13Rik	nonsynonymous SNV	3830417A13Rik:NM_027512:exon4:c.C200T:p.P67L	XqA7.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	66654698	12A2p6	cell line	sgMsh2	66654698	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.441	49	0	0	NA	exonic	Slitrk2	frameshift insertion	"Slitrk2:NM_198863:exon2:c.795dupA:p.S267Kfs*4,Slitrk2:NM_001161431:exon3:c.795dupA:p.S267Kfs*4"	XqA7.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGA	frameshift	A	5	AAAAA	1
M1_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	99	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M1_p20	chrX	71307828	12A2p6	cell line	sgMsh2	71307828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	53	0	0	NA	exonic	Mtm1	synonymous SNV	"Mtm1:NM_001164192:exon13:c.A1503G:p.E501E,Mtm1:NM_001164190:exon14:c.A1596G:p.E532E,Mtm1:NM_001164191:exon14:c.A1596G:p.E532E,Mtm1:NM_019926:exon14:c.A1596G:p.E532E,Mtm1:NM_001358113:exon15:c.A1188G:p.E396E"	XqA7.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M1_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	168	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	98	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M1_p20	chrX	74369835	12A2p6	cell line	sgMsh2	74369835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.538	63	0	0	NA	exonic	Slc10a3	synonymous SNV	"Slc10a3:NM_001256104:exon2:c.A1038G:p.L346L,Slc10a3:NM_145406:exon3:c.A1038G:p.L346L"	XqA7.3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M1_p20	chrX	83722027	12A2p6	cell line	sgMsh2	83722027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	31	0	0	NA	exonic	Dmd	nonsynonymous SNV	Dmd:NM_007868:exon16:c.C1978T:p.L660F	XqC1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ACT	nonsynonymous	A	5	AAAAA	NA
M1_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	104	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	89932572	12A2p6	cell line	sgMsh2	89932572	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	214	0	0	NA	exonic	4930415L06Rik	nonsynonymous SNV	4930415L06Rik:NM_001033880:exon2:c.G18T:p.E6D	XqC1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	91635424	12A2p6	cell line	sgMsh2	91635424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.556	88	0	0	NA	exonic	Gm14781	synonymous SNV	Gm14781:NM_001205268:exon2:c.A981G:p.T327T	XqC2	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M1_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	73	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M1_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	123	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	78	0	0	NA	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	23	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	85	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.478	68	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M1_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	78	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M1_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	100	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M1_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	44	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.62	156	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	112094194	12A2p6	cell line	sgMsh2	112094194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	72	0	0	NA	exonic	Tex16	synonymous SNV	Tex16:NM_031382:exon1:c.T666C:p.S222S	XqE1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M1_p20	chrX	112495365	12A2p6	cell line	sgMsh2	112495365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	226	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon1:c.A19G:p.M7V,2010106E10Rik:NM_026333:exon1:c.A19G:p.M7V"	XqE1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	117015017	12A2p6	cell line	sgMsh2	117015017	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	37	0	0	NA	exonic	H2ab1	synonymous SNV	H2ab1:NM_001102665:exon1:c.G261T:p.L87L	XqE1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
M1_p20	chrX	120726503	12A2p6	cell line	sgMsh2	120726503	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.603	72	0	0	NA	exonic	Pcdh11x	synonymous SNV	"Pcdh11x:NM_001271810:exon5:c.C3120T:p.S1040S,Pcdh11x:NM_001271809:exon6:c.C3150T:p.S1050S"	XqE2	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
M1_p20	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	92	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	127060780	12A2p6	cell line	sgMsh2	127060780	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	90	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.C587A:p.T196K	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	83	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M1_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	87	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	155	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	134758769	12A2p6	cell line	sgMsh2	134758769	C	A	SNV	Mutect2;Strelka2	2	0.225	116	0	0	NA	exonic	Armcx3	nonsynonymous SNV	"Armcx3:NM_001358520:exon5:c.C177A:p.D59E,Armcx3:NM_001358521:exon5:c.C177A:p.D59E,Armcx3:NM_027870:exon5:c.C177A:p.D59E"	XqE3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	138209037	12A2p6	cell line	sgMsh2	138209037	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	85	0	0	NA	exonic	Tex13a	nonsynonymous SNV	Tex13a:NM_026469:exon1:c.A391C:p.M131L	XqF1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	140074858	12A2p6	cell line	sgMsh2	140074858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	22	0	0	NA	exonic	Dnaaf6b	synonymous SNV	Dnaaf6b:NM_177921:exon3:c.T222G:p.P74P	XqF1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M1_p20	chrX	140427939	12A2p6	cell line	sgMsh2	140427939	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	95	0	0	NA	exonic	Frmpd3	synonymous SNV	Frmpd3:NM_001320946:exon14:c.C1788A:p.S596S	XqF1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M1_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	68	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M1_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	66	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	245	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	160903348	12A2p6	cell line	sgMsh2	160903348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	174	0	0	NA	exonic	Gja6	nonsynonymous SNV	Gja6:NM_001001496:exon2:c.T587C:p.V196A	XqF4	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	42	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M1_p20	chrX	169182136	12A2p6	cell line	sgMsh2	169182136	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.329	36	0	0	NA	exonic	Amelx	frameshift deletion	"Amelx:NM_001081978:exon5:c.227delC:p.P76Rfs*25,Amelx:NM_001290371:exon5:c.155delC:p.P52Rfs*25,Amelx:NM_009666:exon5:c.227delC:p.P76Rfs*25"	XqF5	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M1_p20	chrY	726493	12A2p6	cell line	sgMsh2	726493	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.477	104	0	0	NA	exonic	Zfy1	frameshift deletion	Zfy1:NM_009570:exon9:c.1271delA:p.N424Tfs*23	YqA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M1_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	143	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.202897461	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	28	180	39	0.216666667	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9705236	TGG	synonymous	NA	NA	NA	NA
M2	chr1	6248458	12A2p6	cell line	sgMsh2	6248458	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	191	97	26	0.268041237	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.T2100G:p.D700E	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	45	89	20	0.224719101	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	35	85	11	0.129411765	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9849311	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr1	6263127	12A2p6	cell line	sgMsh2	6263127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	116	65	21	0.323076923	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.A4188C:p.S1396S	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9999394	CAG	synonymous	NA	NA	NA	NA
M2	chr1	9681850	12A2p6	cell line	sgMsh2	9681850	T	-	Deletion	Strelka2;Vardict	2	0.1719	64	2	0	0	exonic	Mybl1	stopgain	"Mybl1:NM_001290397:exon8:c.799delA:p.I267fs*0,Mybl1:NM_008651:exon8:c.799delA:p.I267fs*0"	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.722382413	NA	NA	ATT	nonsynonymous	T	9	TTTTTTTTT	-1
M2	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	154	5	1	0.2	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9845405	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	180	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M2	chr1	12848423	12A2p6	cell line	sgMsh2	12848423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	77	0	0	NA	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.G2517A:p.Q839Q,Sulf1:NM_001198565:exon20:c.G2517A:p.Q839Q,Sulf1:NM_172294:exon20:c.G2517A:p.Q839Q"	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9924176	AGT	synonymous	NA	NA	NA	NA
M2	chr1	14302820	12A2p6	cell line	sgMsh2	14302820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	3	0	0	exonic	Eya1	nonsynonymous SNV	"Eya1:NM_001310459:exon3:c.T74C:p.L25P,Eya1:NM_010164:exon3:c.T74C:p.L25P"	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.848872876	1	0.9816592	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	18251301	12A2p6	cell line	sgMsh2	18251301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	65	0	0	NA	exonic	Defb41	nonsynonymous SNV	Defb41:NM_183124:exon2:c.G88A:p.E30K	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9981424	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	20381404	12A2p6	cell line	sgMsh2	20381404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	44	3	0	0	exonic	Pkhd1	synonymous SNV	Pkhd1:NM_153179:exon40:c.A6666G:p.R2222R	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	CTC	synonymous	NA	NA	NA	NA
M2	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	49	3	2	0.666666667	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9943084	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	51	2	0	0	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9950504	TGC	synonymous	NA	NA	NA	NA
M2	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	91	20	0.21978022	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	108	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr1	26683437	12A2p6	cell line	sgMsh2	26683437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	164	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2661G:p.Q887Q	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999982	CTT	synonymous	NA	NA	NA	NA
M2	chr1	26687421	12A2p6	cell line	sgMsh2	26687421	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	275	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G6T:p.E2D	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.163891298	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	28777106	12A2p6	cell line	sgMsh2	28777106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	169	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.T1844A:p.V615E	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	TAC	nonsynonymous	TCTTT	11	TCTTTTCTTTT	NA
M2	chr1	28777321	12A2p6	cell line	sgMsh2	28777321	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.197	138	0	0	NA	exonic	Gm597	synonymous SNV	Gm597:NM_001013750:exon2:c.T1629C:p.A543A	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9711319	AAG	synonymous	NA	NA	NA	NA
M2	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	26	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9720207	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	38	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9506989	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	215	47	0	0	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9997028	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	34589007	12A2p6	cell line	sgMsh2	34589007	G	A	SNV	Mutect2;Vardict	2	0.066	61	0	0	NA	exonic	Amer3	nonsynonymous SNV	Amer3:NM_213727:exon2:c.G2326A:p.G776S	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.277354504	3	0.9770396	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	141	162	30	0.185185185	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999647	TAG	synonymous	NA	NA	NA	NA
M2	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	19	3	0.157894737	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9868797	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	49	1	1	1	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9943084	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr1	38798142	12A2p6	cell line	sgMsh2	38798142	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	45	0	0	NA	exonic	Lonrf2	nonsynonymous SNV	Lonrf2:NM_001029878:exon12:c.G2152T:p.G718C	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr1	43100865	12A2p6	cell line	sgMsh2	43100865	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	126	73	2	0.02739726	exonic	AI597479	frameshift deletion	AI597479:NM_133818:exon2:c.250delA:p.N85Mfs*8	1qB	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.937122036	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	90	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9801155	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	163	189	39	0.206349206	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999981	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	51300751	12A2p6	cell line	sgMsh2	51300751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	58	104	42	0.403846154	exonic	Cavin2	nonsynonymous SNV	Cavin2:NM_138741:exon2:c.A586G:p.T196A	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9969666	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	166	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999876	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	166	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999985	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	53434034	12A2p6	cell line	sgMsh2	53434034	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	260	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon57:c.G10432A:p.A3478T	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9999818	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	53640345	12A2p6	cell line	sgMsh2	53640345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	311	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon11:c.T980C:p.L327P	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	203	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.987550128	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	823	174	0.211421628	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	55211207	12A2p6	cell line	sgMsh2	55211207	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	137	6	0	0	exonic	Rftn2	synonymous SNV	"Rftn2:NM_001356288:exon2:c.G9A:p.E3E,Rftn2:NM_028713:exon3:c.G378A:p.E126E"	1qC1.2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.9132821	ACT	synonymous	NA	NA	NA	NA
M2	chr1	58017170	12A2p6	cell line	sgMsh2	58017170	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	102	28	8	0.285714286	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.A2212G:p.I738V,Sgo2a:NM_199007:exon7:c.A2512G:p.I838V"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9972619	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	110	1	0	0	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	0.8112761	CAG	synonymous	NA	NA	NA	NA
M2	chr1	58153180	12A2p6	cell line	sgMsh2	58153180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	131	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon15:c.G1608A:p.T536T	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	CGA	synonymous	NA	NA	NA	NA
M2	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	35	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9849311	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M2	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	73	22	4	0.181818182	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9989399	ATG	synonymous	NA	NA	NA	NA
M2	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	71	350	77	0.22	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	58752472	12A2p6	cell line	sgMsh2	58752472	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	179	78	2	0.025641026	exonic	Cflar	synonymous SNV	"Cflar:NM_001293805:exon7:c.A375G:p.A125A,Cflar:NM_001355056:exon8:c.A375G:p.A125A,Cflar:NM_001289704:exon9:c.A933G:p.A311A,Cflar:NM_001293804:exon9:c.A375G:p.A125A,Cflar:NM_207653:exon9:c.A933G:p.A311A"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.142879593	3	1.00E-09	CAT	synonymous	NA	NA	NA	NA
M2	chr1	58824088	12A2p6	cell line	sgMsh2	58824088	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	123	174	28	0.16091954	exonic	Casp8	nonsynonymous SNV	"Casp8:NM_001080126:exon2:c.G146T:p.R49L,Casp8:NM_009812:exon2:c.G146T:p.R49L,Casp8:NM_001277926:exon3:c.G206T:p.R69L"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	87	117	27	0.230769231	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996031	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	90	31	11	0.35483871	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.8944943	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	5	1	0.2	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	CTG	nonsynonymous	G	5	GGGGG	NA
M2	chr1	63058826	12A2p6	cell line	sgMsh2	63058826	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	78	26	9	0.346153846	exonic	Ino80d	synonymous SNV	"Ino80d:NM_001081436:exon12:c.A1908C:p.T636T,Ino80d:NM_001114609:exon12:c.A2223C:p.T741T"	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9992536	CTG	synonymous	GTGG	9	GTGGGTGGG	NA
M2	chr1	63719734	12A2p6	cell line	sgMsh2	63719734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	126	1	0	0	exonic	Mdh1b	nonsynonymous SNV	Mdh1b:NM_029696:exon5:c.T698C:p.V233A	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	64734907	12A2p6	cell line	sgMsh2	64734907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	37	18	4	0.222222222	exonic	Fzd5	nonsynonymous SNV	"Fzd5:NM_001042659:exon2:c.G1694A:p.G565D,Fzd5:NM_022721:exon2:c.G1694A:p.G565D"	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9539145	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr1	66416139	12A2p6	cell line	sgMsh2	66416139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	99	1	0	0	exonic	Map2	nonsynonymous SNV	Map2:NM_001310634:exon7:c.A4187G:p.D1396G	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998291	GAC	nonsynonymous	GTGG	8	GTGGGTGG	NA
M2	chr1	71577793	12A2p6	cell line	sgMsh2	71577793	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	93	301	50	0.166112957	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon15:c.A1511C:p.D504A	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9990503	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	80	5	0	0	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993513	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr1	72326286	12A2p6	cell line	sgMsh2	72326286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	121	190	43	0.226315789	exonic	Xrcc5	nonsynonymous SNV	"Xrcc5:NM_001357519:exon8:c.A812G:p.Q271R,Xrcc5:NM_001357520:exon8:c.A812G:p.Q271R,Xrcc5:NM_009533:exon8:c.A869G:p.Q290R"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999635	CAA	nonsynonymous	A	5	AAAAA	NA
M2	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	91	77	31	0.402597403	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr1	74383678	12A2p6	cell line	sgMsh2	74383678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	69	0	0	NA	exonic	Slc11a1	synonymous SNV	Slc11a1:NM_013612:exon11:c.A1089G:p.V363V	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9981337	TAG	synonymous	NA	NA	NA	NA
M2	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	98	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	74622232	12A2p6	cell line	sgMsh2	74622232	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	72	2	0	0	exonic	Stk36	nonsynonymous SNV	Stk36:NM_175031:exon12:c.C1417A:p.L473I	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9923911	CCT	nonsynonymous	TCCT	8	TCCTTCCT	NA
M2	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	123	56	13	0.232142857	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	150	34	9	0.264705882	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.999928	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	36	1	1	1	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	75194187	12A2p6	cell line	sgMsh2	75194187	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	87	41	4	0.097560976	exonic	Ankzf1	nonsynonymous SNV	"Ankzf1:NM_001267620:exon2:c.C236T:p.T79I,Ankzf1:NM_026187:exon2:c.C236T:p.T79I"	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9614879	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	64	195	36	0.184615385	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9980075	TAG	synonymous	NA	NA	NA	NA
M2	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	47	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.571518372	2	0.8394877	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	78192518	12A2p6	cell line	sgMsh2	78192518	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	83	0	0	NA	exonic	Pax3	synonymous SNV	"Pax3:NM_001159520:exon4:c.G510A:p.A170A,Pax3:NM_008781:exon4:c.G510A:p.A170A"	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.998678	CCG	synonymous	NA	NA	NA	NA
M2	chr1	78417181	12A2p6	cell line	sgMsh2	78417181	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	189	4	2	0.5	exonic	Sgpp2	nonsynonymous SNV	Sgpp2:NM_001004173:exon5:c.G820T:p.D274Y	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9999957	TGA	nonsynonymous	NA	NA	NA	NA
M2	chr1	78417407	12A2p6	cell line	sgMsh2	78417407	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	108	5	2	0.4	exonic	Sgpp2	nonsynonymous SNV	Sgpp2:NM_001004173:exon5:c.G1046T:p.R349M	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	AGG	nonsynonymous	T	5	TTTTT	NA
M2	chr1	81269097	12A2p6	cell line	sgMsh2	81269097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	87	0	0	NA	exonic	Nyap2	synonymous SNV	"Nyap2:NM_001356397:exon5:c.T1663C:p.L555L,Nyap2:NM_001356400:exon5:c.T1663C:p.L555L,Nyap2:NM_001356398:exon6:c.T1759C:p.L587L,Nyap2:NM_001356399:exon6:c.T1663C:p.L555L"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996031	GTT	synonymous	NA	NA	NA	NA
M2	chr1	82676714	12A2p6	cell line	sgMsh2	82676714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	48	7	1	0.142857143	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon28:c.A2066C:p.D689A	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	118	163	4	0.024539877	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.764826056	1	0.6863432	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.69338626	2	8.94E-09	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.127	90	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.533697303	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr1	86427494	12A2p6	cell line	sgMsh2	86427494	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	45	0	0	NA	exonic	Tex44	nonsynonymous SNV	Tex44:NM_027966:exon1:c.G1124A:p.G375D	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	97	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9961566	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	88205463	12A2p6	cell line	sgMsh2	88205463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	40	0	0	NA	exonic	Dnajb3	synonymous SNV	Dnajb3:NM_008299:exon1:c.C216T:p.G72G	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9887632	CGC	synonymous	NA	NA	NA	NA
M2	chr1	88218234	12A2p6	cell line	sgMsh2	88218234	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	345	262	1	0.003816794	exonic	Ugt1a1;Ugt1a10;Ugt1a2;Ugt1a5;Ugt1a6a;Ugt1a6b;Ugt1a7c;Ugt1a8;Ugt1a9	nonsynonymous SNV	"Ugt1a8:NM_001378375:exon5:c.C1403T:p.A468V,Ugt1a2:NM_013701:exon5:c.C1412T:p.A471V,Ugt1a10:NM_201641:exon5:c.C1403T:p.A468V,Ugt1a7c:NM_201642:exon5:c.C1406T:p.A469V,Ugt1a5:NM_201643:exon5:c.C1400T:p.A467V,Ugt1a9:NM_201644:exon5:c.C1397T:p.A466V,Ugt1a1:NM_201645:exon5:c.C1418T:p.A473V,Ugt1a6a:NM_145079:exon6:c.C1406T:p.A469V,Ugt1a6b:NM_201410:exon6:c.C1406T:p.A469V"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.184903003	3	1	GCA	nonsynonymous	G	5	GGGGG	NA
M2	chr1	88233353	12A2p6	cell line	sgMsh2	88233353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	326	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon7:c.T692G:p.L231R	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.336187278	3	0.9999996	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	88243971	12A2p6	cell line	sgMsh2	88243971	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	264	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon22:c.T2321C:p.L774P	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.285759186	3	4.12E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	88265942	12A2p6	cell line	sgMsh2	88265942	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	455	153	0	0	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon5:c.G1015A:p.D339N,Hjurp:NM_198652:exon8:c.G1243A:p.D415N"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.17229598	3	1	TCA	nonsynonymous	NA	NA	NA	NA
M2	chr1	90145105	12A2p6	cell line	sgMsh2	90145105	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	146	0	0	NA	exonic	Iqca	nonsynonymous SNV	"Iqca:NM_001368722:exon2:c.A52G:p.N18D,Iqca:NM_029122:exon2:c.A52G:p.N18D"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999937	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	90933394	12A2p6	cell line	sgMsh2	90933394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	38	39	5	0.128205128	exonic	Mlph	synonymous SNV	Mlph:NM_053015:exon7:c.T750G:p.A250A	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9877585	CTT	synonymous	NA	NA	NA	NA
M2	chr1	91300583	12A2p6	cell line	sgMsh2	91300583	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	66	21	4	0.19047619	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon2:c.G109A:p.A37T	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9937533	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	20	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	9.94E-06	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M2	chr1	92480592	12A2p6	cell line	sgMsh2	92480592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	exonic	Olfr1416	nonsynonymous SNV	Olfr1416:NM_147038:exon1:c.A28G:p.S10G	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9981303	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	59	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	93054871	12A2p6	cell line	sgMsh2	93054871	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	74	1	1	1	exonic	Kif1a	nonsynonymous SNV	"Kif1a:NM_001110315:exon23:c.G2183A:p.G728D,Kif1a:NM_001294149:exon23:c.G2183A:p.G728D,Kif1a:NM_001294150:exon23:c.G2210A:p.G737D,Kif1a:NM_008440:exon23:c.G2183A:p.G728D,Kif1a:NM_001368847:exon24:c.G2210A:p.G737D"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9987897	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr1	93140406	12A2p6	cell line	sgMsh2	93140406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	106	0	0	NA	exonic	Agxt	nonsynonymous SNV	"Agxt:NM_001276710:exon6:c.A680G:p.K227R,Agxt:NM_016702:exon6:c.A746G:p.K249R"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	AAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M2	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	160	88	2	0.022727273	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.916110331	1	0.9997957	AAG	synonymous	NA	NA	NA	NA
M2	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	87	3	0	0	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996031	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	105	27	5	0.185185185	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998878	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	64	157	31	0.197452229	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.981738	TAG	synonymous	NA	NA	NA	NA
M2	chr1	95591739	12A2p6	cell line	sgMsh2	95591739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	123	3	1	0.333333333	exonic	St8sia4	synonymous SNV	St8sia4:NM_009183:exon5:c.T1023C:p.N341N	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	CAT	synonymous	NA	NA	NA	NA
M2	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	50	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.920312672	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr1	100379099	12A2p6	cell line	sgMsh2	100379099	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	180	0	0	NA	exonic	Cntnap5b	nonsynonymous SNV	Cntnap5b:NM_172851:exon17:c.A2540T:p.E847V	1qE1.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr1	111862141	12A2p6	cell line	sgMsh2	111862141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	241	0	0	NA	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.T663A:p.A221A	1qE2.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.9944648	TAG	synonymous	NA	NA	NA	NA
M2	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.198	210	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.832063512	NA	NA	CAT	frameshift	T	5	TTTTT	1
M2	chr1	118543290	12A2p6	cell line	sgMsh2	118543290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	81	75	25	0.333333333	exonic	Clasp1	synonymous SNV	"Clasp1:NM_001293301:exon23:c.A2472G:p.E824E,Clasp1:NM_001359340:exon24:c.A2499G:p.E833E,Clasp1:NM_029709:exon24:c.A2496G:p.E832E,Clasp1:NM_001359338:exon25:c.A2523G:p.E841E,Clasp1:NM_001359341:exon25:c.A2607G:p.E869E,Clasp1:NM_001359342:exon25:c.A2604G:p.E868E,Clasp1:NM_001359346:exon25:c.A2523G:p.E841E,Clasp1:NM_001359330:exon26:c.A2631G:p.E877E,Clasp1:NM_001359336:exon26:c.A2547G:p.E849E,Clasp1:NM_001359339:exon26:c.A2631G:p.E877E,Clasp1:NM_001359343:exon26:c.A2586G:p.E862E,Clasp1:NM_001359345:exon26:c.A2547G:p.E849E,Clasp1:NM_001293300:exon27:c.A2655G:p.E885E,Clasp1:NM_001359329:exon27:c.A2694G:p.E898E,Clasp1:NM_001359334:exon27:c.A2694G:p.E898E,Clasp1:NM_001359335:exon27:c.A2694G:p.E898E,Clasp1:NM_001359337:exon27:c.A2655G:p.E885E,Clasp1:NM_001359347:exon27:c.A1425G:p.E475E,Clasp1:NM_001359328:exon28:c.A2718G:p.E906E,Clasp1:NM_001359331:exon28:c.A2718G:p.E906E"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	AAC	synonymous	NA	NA	NA	NA
M2	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	65	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9981424	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	119617410	12A2p6	cell line	sgMsh2	119617410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	208	56	14	0.25	exonic	Epb41l5	nonsynonymous SNV	"Epb41l5:NM_001113416:exon9:c.A668G:p.K223R,Epb41l5:NM_145506:exon9:c.A668G:p.K223R"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	125	25	8	0.32	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9998432	GTT	synonymous	NA	NA	NA	NA
M2	chr1	120063231	12A2p6	cell line	sgMsh2	120063231	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	15	0	0	NA	exonic	Sctr	nonsynonymous SNV	"Sctr:NM_001311077:exon13:c.G1293T:p.K431N,Sctr:NM_001012322:exon14:c.G1344T:p.K448N"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9412634	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	121312209	12A2p6	cell line	sgMsh2	121312209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	84	149	36	0.241610738	exonic	Insig2	nonsynonymous SNV	"Insig2:NM_001271532:exon2:c.G37A:p.A13T,Insig2:NM_001271531:exon3:c.G361A:p.A121T,Insig2:NM_001357251:exon3:c.G361A:p.A121T,Insig2:NM_133748:exon3:c.G361A:p.A121T,Insig2:NM_178082:exon3:c.G361A:p.A121T"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	108	59	14	0.237288136	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9993581	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.243	156	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999969	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	113	20	0.17699115	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9985758	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	120	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999609	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	107	221	51	0.230769231	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	128588949	12A2p6	cell line	sgMsh2	128588949	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	70	0	0	NA	exonic	Cxcr4	nonsynonymous SNV	"Cxcr4:NM_001356509:exon2:c.A968C:p.N323T,Cxcr4:NM_009911:exon2:c.A974C:p.N325T"	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.264747481	3	0.9935609	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	181	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	194	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9999875	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	53	27	5	0.185185185	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	GTA	synonymous	NA	NA	NA	NA
M2	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	44	70	9	0.128571429	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9833182	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M2	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	75	44	7	0.159090909	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	GGC	synonymous	NA	NA	NA	NA
M2	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	143	100	26	0.26	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999534	CTG	synonymous	NA	NA	NA	NA
M2	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	93	232	63	0.271551724	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.710195624	2	0.6697265	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	45	30	10	0.333333333	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.743814352	1	0.7407125	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	15	23	10	0.434782609	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9412634	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr1	134309689	12A2p6	cell line	sgMsh2	134309689	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	30	0	0	NA	exonic	Ppfia4	frameshift deletion	"Ppfia4:NM_001144855:exon23:c.2871delG:p.L958Sfs*47,Ppfia4:NM_001374777:exon24:c.2871delG:p.L958Sfs*47"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.91190799	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2	chr1	134350215	12A2p6	cell line	sgMsh2	134350215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	108	296	78	0.263513514	exonic	Tmem183a	synonymous SNV	"Tmem183a:NM_001042485:exon7:c.T807C:p.C269C,Tmem183a:NM_020588:exon7:c.T810C:p.C270C"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	TAC	synonymous	NA	NA	NA	NA
M2	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.254	133	56	11	0.196428571	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999843	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.254	133	58	12	0.206896552	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999843	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	135469807	12A2p6	cell line	sgMsh2	135469807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	63	28	5	0.178571429	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon7:c.A2623G:p.M875V	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9978629	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr1	135883932	12A2p6	cell line	sgMsh2	135883932	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	19	6	0.315789474	exonic	Pkp1	synonymous SNV	"Pkp1:NM_001313701:exon6:c.C1200T:p.D400D,Pkp1:NM_019645:exon6:c.C1200T:p.D400D"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9973318	GGT	synonymous	NA	NA	NA	NA
M2	chr1	138287941	12A2p6	cell line	sgMsh2	138287941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	150	0	0	NA	exonic	Atp6v1g3	nonsynonymous SNV	Atp6v1g3:NM_177397:exon3:c.A338G:p.N113S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999952	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	139062915	12A2p6	cell line	sgMsh2	139062915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	119	40	10	0.25	exonic	Dennd1b	nonsynonymous SNV	"Dennd1b:NM_181347:exon8:c.T331C:p.Y111H,Dennd1b:NM_001166501:exon9:c.T556C:p.Y186H"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	139323325	12A2p6	cell line	sgMsh2	139323325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	76	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon4:c.A887G:p.H296R	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9969481	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	139447488	12A2p6	cell line	sgMsh2	139447488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	147	43	12	0.279069767	exonic	Zbtb41	synonymous SNV	Zbtb41:NM_172643:exon11:c.A2685T:p.T895T	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	CAG	synonymous	NA	NA	NA	NA
M2	chr1	139489652	12A2p6	cell line	sgMsh2	139489652	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	81	20	3	0.15	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon23:c.T8386C:p.F2796L	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.997071	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	139490428	12A2p6	cell line	sgMsh2	139490428	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	176	10	3	0.3	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon25:c.T8894G:p.V2965G	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999992	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	187	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.920312672	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	184	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9990338	TAT	synonymous	NA	NA	NA	NA
M2	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	113	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.999936	TTT	synonymous	NA	NA	NA	NA
M2	chr1	146682578	12A2p6	cell line	sgMsh2	146682578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	89	0	0	NA	exonic	Brinp3	nonsynonymous SNV	"Brinp3:NM_001145807:exon3:c.A239G:p.E80G,Brinp3:NM_153539:exon3:c.A239G:p.E80G,Brinp3:NM_001357571:exon4:c.A239G:p.E80G"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	146682720	12A2p6	cell line	sgMsh2	146682720	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	72	0	0	NA	exonic	Brinp3	synonymous SNV	"Brinp3:NM_001145807:exon3:c.T381C:p.L127L,Brinp3:NM_153539:exon3:c.T381C:p.L127L,Brinp3:NM_001357571:exon4:c.T381C:p.L127L"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	TTA	synonymous	NA	NA	NA	NA
M2	chr1	150380361	12A2p6	cell line	sgMsh2	150380361	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	111	113	15	0.132743363	exonic	Odr4	nonsynonymous SNV	"Odr4:NM_001077237:exon8:c.A632C:p.N211T,Odr4:NM_001357579:exon9:c.A485C:p.N162T,Odr4:NM_145511:exon9:c.A728C:p.N243T"	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.575720713	2	0.9978408	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	63	240	58	0.241666667	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9978629	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	77	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	136	238	46	0.193277311	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999873	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr1	151361555	12A2p6	cell line	sgMsh2	151361555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	132	404	91	0.225247525	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001039512:exon13:c.A1469G:p.Y490C,Ivns1abp:NM_001359262:exon13:c.A1469G:p.Y490C,Ivns1abp:NM_001359263:exon13:c.A752G:p.Y251C,Ivns1abp:NM_054102:exon14:c.A1595G:p.Y532C"	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9998728	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	151403818	12A2p6	cell line	sgMsh2	151403818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	138	78	24	0.307692308	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon9:c.T1238A:p.I413N	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999889	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr1	151641450	12A2p6	cell line	sgMsh2	151641450	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	161	40	1	0.025	exonic	Niban1	nonsynonymous SNV	Niban1:NM_022018:exon3:c.T209C:p.V70A	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.247938117	3	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	177	72	24	0.333333333	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999774	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	153904660	12A2p6	cell line	sgMsh2	153904660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	99	573	196	0.342059337	exonic	Glul	nonsynonymous SNV	Glul:NM_008131:exon3:c.T290C:p.V97A	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9995524	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	199	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	75	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	AAG	nonsynonymous	A	5	AAAAA	NA
M2	chr1	158362623	12A2p6	cell line	sgMsh2	158362623	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.389	16	0	0	NA	exonic	Astn1	frameshift deletion	"Astn1:NM_001205204:exon1:c.41delG:p.P16Rfs*37,Astn1:NM_007495:exon1:c.41delG:p.P16Rfs*37"	1qH1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TGG	frameshift	CTG	9	CTGCTGCTG	-1
M2	chr1	158845128	12A2p6	cell line	sgMsh2	158845128	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	96	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon9:c.G3244A:p.V1082I	1qH1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr1	159327154	12A2p6	cell line	sgMsh2	159327154	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	232	3	0	0	exonic	Cop1	frameshift deletion	"Cop1:NM_001360878:exon17:c.1919delA:p.N642Tfs*2,Cop1:NM_011931:exon17:c.1931delA:p.N646Tfs*2"	1qH1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	165	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999983	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	14	49	11	0.224489796	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9372259	AAG	synonymous	NA	NA	NA	NA
M2	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	136	26	6	0.230769231	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9919953	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	167	30	9	0.3	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9899744	CCA	synonymous	NA	NA	NA	NA
M2	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	130	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9968983	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	165769901	12A2p6	cell line	sgMsh2	165769901	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	89	159	0	0	exonic	Creg1	nonsynonymous SNV	Creg1:NM_011804:exon2:c.T443C:p.V148A	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.235331094	3	0.9997642	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	69	13	4	0.307692308	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.689183919	2	0.6369248	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	100	7	3	0.428571429	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9998407	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	74	282	69	0.244680851	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	170004799	12A2p6	cell line	sgMsh2	170004799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	166	1	1	1	exonic	Ddr2	nonsynonymous SNV	Ddr2:NM_022563:exon5:c.C421T:p.L141F	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999985	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	218	57	0.26146789	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9961034	ATA	synonymous	NA	NA	NA	NA
M2	chr1	171247056	12A2p6	cell line	sgMsh2	171247056	A	C	SNV	Mutect2;Vardict	2	0.375	6	197	48	0.243654822	exonic	Ndufs2	synonymous SNV	Ndufs2:NM_153064:exon1:c.T33G:p.R11R	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.8922006	CAC	synonymous	NA	NA	NA	NA
M2	chr1	171258815	12A2p6	cell line	sgMsh2	171258815	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	79	3	0	0	exonic	Adamts4	frameshift deletion	Adamts4:NM_172845:exon9:c.2139delG:p.S716Lfs*9	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	174	60	9	0.15	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr1	171344508	12A2p6	cell line	sgMsh2	171344508	C	-	Deletion	Mutect2;Vardict	2	0.098	107	137	0	0	exonic	Nit1	frameshift deletion	"Nit1:NM_001242580:exon3:c.22delG:p.E8Sfs*9,Nit1:NM_012049:exon3:c.121delG:p.E41Sfs*9"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.411829415	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2	chr1	171356777	12A2p6	cell line	sgMsh2	171356777	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	251	616	0	0	exonic	Pfdn2	synonymous SNV	"Pfdn2:NM_001360824:exon3:c.G237T:p.V79V,Pfdn2:NM_001360825:exon3:c.G93T:p.V31V,Pfdn2:NM_011070:exon3:c.G237T:p.V79V"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.512685598	2	0.9999998	TGG	synonymous	NA	NA	NA	NA
M2	chr1	171580820	12A2p6	cell line	sgMsh2	171580820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	208	0	0	NA	exonic	Cd244a	synonymous SNV	Cd244a:NM_018729:exon7:c.G1056A:p.K352K	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.550506667	2	0.9999996	AGG	synonymous	NA	NA	NA	NA
M2	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	68	99	26	0.262626263	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	33	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9826982	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	279	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9999797	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	252	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	156	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.281556845	3	0.9999887	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	211	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.714397965	2	0.9705248	ATG	synonymous	NA	NA	NA	NA
M2	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	204	72	0	0	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.550506667	2	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr1	174159275	12A2p6	cell line	sgMsh2	174159275	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	202	0	0	NA	exonic	Olfr420	frameshift deletion	Olfr420:NM_146305:exon1:c.501delT:p.C169Vfs*28	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.941324377	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr1	174193632	12A2p6	cell line	sgMsh2	174193632	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.151	190	0	0	NA	exonic	Spta1	frameshift insertion	Spta1:NM_011465:exon14:c.1776dupA:p.T594Nfs*4	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.634553486	NA	NA	CTA	frameshift	A	5	AAAAA	1
M2	chr1	174430463	12A2p6	cell line	sgMsh2	174430463	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	127	0	0	NA	exonic	Olfr414	frameshift deletion	Olfr414:NM_146761:exon1:c.34delT:p.F12Lfs*25	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	97	202	48	0.237623762	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998033	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	79	129	19	0.147286822	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9959622	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	90	130	32	0.246153846	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	57	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9967467	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	95	68	3	0.044117647	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M2	chr1	180904517	12A2p6	cell line	sgMsh2	180904517	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.365	34	115	26	0.226086957	exonic	Pycr2	synonymous SNV	Pycr2:NM_133705:exon1:c.C54T:p.G18G	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9838526	GCT	synonymous	NA	NA	NA	NA
M2	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	51	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	2	1	1	0.9950504	CCT	synonymous	NA	NA	NA	NA
M2	chr1	187117425	12A2p6	cell line	sgMsh2	187117425	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	33	0	0	NA	exonic	Spata17	synonymous SNV	Spata17:NM_028848:exon7:c.A612G:p.P204P	1qH5	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9826982	ATG	synonymous	NA	NA	NA	NA
M2	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	133	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9983798	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr1	189295690	12A2p6	cell line	sgMsh2	189295690	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon3:c.G379A:p.A127T,Kcnk2:NM_001281847:exon3:c.G343A:p.A115T,Kcnk2:NM_010607:exon3:c.G334A:p.A112T"	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr1	191778449	12A2p6	cell line	sgMsh2	191778449	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	142	154	47	0.305194805	exonic	Lpgat1	nonsynonymous SNV	"Lpgat1:NM_001134829:exon8:c.G1145T:p.W382L,Lpgat1:NM_172266:exon8:c.G1028T:p.W343L"	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999917	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	98	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr1	193323791	12A2p6	cell line	sgMsh2	193323791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	89	301	89	0.295681063	exonic	Lamb3	nonsynonymous SNV	"Lamb3:NM_001277928:exon6:c.T427C:p.W143R,Lamb3:NM_008484:exon6:c.T427C:p.W143R"	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr10	3366807	12A2p6	cell line	sgMsh2	3366807	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	21	0	0	NA	exonic	Ppp1r14c	synonymous SNV	Ppp1r14c:NM_133485:exon1:c.G141T:p.S47S	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9607086	CGG	synonymous	NA	NA	NA	NA
M2	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	58	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	31	137	35	0.255474453	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9801412	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	4106413	12A2p6	cell line	sgMsh2	4106413	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	62	202	47	0.232673267	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon26:c.C2728T:p.H910Y,Mthfd1l:NM_001170786:exon26:c.C2728T:p.H910Y,Mthfd1l:NM_172308:exon26:c.C2728T:p.H910Y"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	96	42	14	0.333333333	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	5040876	12A2p6	cell line	sgMsh2	5040876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	47	37	7	0.189189189	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon11:c.T1802C:p.L601P,Syne1:NM_001079686:exon49:c.T7985C:p.L2662P,Syne1:NM_001347711:exon140:c.T25388C:p.L8463P,Syne1:NM_001347732:exon140:c.T25352C:p.L8451P"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9934558	GAG	nonsynonymous	TGT	8	TGTTGTTG	NA
M2	chr10	5185785	12A2p6	cell line	sgMsh2	5185785	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	52	36	3	0.083333333	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001079686:exon3:c.T484A:p.L162I,Syne1:NM_001347711:exon93:c.T17803A:p.L5935I,Syne1:NM_001347732:exon93:c.T17782A:p.L5928I"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9953845	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	135	4	3	0.75	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999864	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	5802435	12A2p6	cell line	sgMsh2	5802435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	144	8	2	0.25	exonic	Fbxo5	synonymous SNV	Fbxo5:NM_025995:exon2:c.T177C:p.S59S	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	CAC	synonymous	NA	NA	NA	NA
M2	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	176	34	14	0.411764706	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999992	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	151	30	10	0.333333333	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999956	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	59	14	0.237288136	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9999803	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	11609430	12A2p6	cell line	sgMsh2	11609430	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	243	69	0	0	exonic	Timm8a1	stopgain	Timm8a1:NM_013898:exon1:c.G133T:p.E45X	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.453852825	2	0.9984794	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	102	16	2	0.125	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	CGC	synonymous	NA	NA	NA	NA
M2	chr10	13239925	12A2p6	cell line	sgMsh2	13239925	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	116	5	0	0	exonic	Phactr2	synonymous SNV	"Phactr2:NM_001033257:exon8:c.A1384C:p.R462R,Phactr2:NM_001359294:exon8:c.A1237C:p.R413R,Phactr2:NM_001195065:exon9:c.A1573C:p.R525R,Phactr2:NM_001195066:exon9:c.A1363C:p.R455R,Phactr2:NM_001195096:exon9:c.A1396C:p.R466R"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.760623715	1	0.6540618	CTT	synonymous	NA	NA	NA	NA
M2	chr10	13829244	12A2p6	cell line	sgMsh2	13829244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	103	37	12	0.324324324	exonic	Aig1	nonsynonymous SNV	"Aig1:NM_001347362:exon2:c.T296C:p.V99A,Aig1:NM_025446:exon2:c.T296C:p.V99A"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998709	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	122	37	10	0.27027027	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.999966	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	70	24	3	0.125	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9802223	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.19	65	34	9	0.264705882	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.798444784	1	0.8733955	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	117	32	12	0.375	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999517	CAC	synonymous	NA	NA	NA	NA
M2	chr10	18696606	12A2p6	cell line	sgMsh2	18696606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	0	0	NA	exonic	Arfgef3	nonsynonymous SNV	Arfgef3:NM_001033258:exon4:c.G298A:p.A100T	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9975591	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	61	20	5	0.25	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	20136987	12A2p6	cell line	sgMsh2	20136987	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	112	32	8	0.25	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon27:c.G3876T:p.K1292N	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9998725	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	56	7	5	0.714285714	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9965109	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	22067715	12A2p6	cell line	sgMsh2	22067715	T	-	Deletion	Mutect2;Vardict	2	0.048	149	0	0	NA	exonic	4930444G20Rik	frameshift deletion	4930444G20Rik:NM_053264:exon1:c.365delA:p.N122Tfs*22	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.201712367	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	521	97	0.186180422	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9965109	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr10	24596867	12A2p6	cell line	sgMsh2	24596867	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	102	938	224	0.23880597	exonic	Ccn2	nonsynonymous SNV	Ccn2:NM_010217:exon4:c.C674T:p.T225I	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.324	128	2	1	0.5	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999777	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	77	287	74	0.257839721	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9944975	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	25994095	12A2p6	cell line	sgMsh2	25994095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	116	14	2	0.142857143	exonic	Tmem200a	nonsynonymous SNV	"Tmem200a:NM_029881:exon2:c.A275G:p.D92G,Tmem200a:NM_001358814:exon3:c.A275G:p.D92G"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9987907	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	26981624	12A2p6	cell line	sgMsh2	26981624	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	132	0	0	NA	exonic	Lama2	synonymous SNV	Lama2:NM_008481:exon64:c.C9228T:p.T3076T	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.999965	TGG	synonymous	NA	NA	NA	NA
M2	chr10	28782343	12A2p6	cell line	sgMsh2	28782343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	154	0	0	NA	exonic	Themis	nonsynonymous SNV	"Themis:NM_001374699:exon4:c.G1365T:p.W455C,Themis:NM_178666:exon4:c.G1365T:p.W455C,Themis:NM_001305663:exon5:c.G1098T:p.W366C"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9998619	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	113	43	2	0.046511628	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr10	30834310	12A2p6	cell line	sgMsh2	30834310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	89	2	0	0	exonic	Hey2	nonsynonymous SNV	Hey2:NM_013904:exon5:c.T446C:p.L149P	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	39823767	12A2p6	cell line	sgMsh2	39823767	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	161	29	2	0.068965517	exonic	Rev3l	nonsynonymous SNV	Rev3l:NM_011264:exon13:c.A4259G:p.H1420R	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.281556845	3	0.9999925	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	40	8	0.2	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999969	CCT	synonymous	NA	NA	NA	NA
M2	chr10	39828472	12A2p6	cell line	sgMsh2	39828472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	81	21	4	0.19047619	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon14:c.A6513G:p.Q2171Q	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	AAG	synonymous	NA	NA	NA	NA
M2	chr10	40227566	12A2p6	cell line	sgMsh2	40227566	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	147	129	33	0.255813953	exonic	Rpf2	nonsynonymous SNV	"Rpf2:NM_001042556:exon8:c.A490C:p.S164R,Rpf2:NM_023323:exon8:c.A589C:p.S197R"	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	41253689	12A2p6	cell line	sgMsh2	41253689	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	74	29	6	0.206896552	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon14:c.T1534G:p.L512V	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.997237	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	131	55	13	0.236363636	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	39	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	GTT	synonymous	NA	NA	NA	NA
M2	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	38	23	1	0.043478261	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9877585	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	42957647	12A2p6	cell line	sgMsh2	42957647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	76	0	0	NA	exonic	Scml4	nonsynonymous SNV	"Scml4:NM_001359265:exon7:c.T956G:p.L319R,Scml4:NM_001359264:exon8:c.T1376G:p.L459R,Scml4:NM_172938:exon9:c.T1130G:p.L377R"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	29	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9772149	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	50700087	12A2p6	cell line	sgMsh2	50700087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	90	186	42	0.225806452	exonic	Ascc3	synonymous SNV	Ascc3:NM_198007:exon15:c.T2437C:p.L813L	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	ATT	synonymous	NA	NA	NA	NA
M2	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	123	102	13	0.12745098	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr10	50981576	12A2p6	cell line	sgMsh2	50981576	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	33	0	0	NA	exonic	Sim1	nonsynonymous SNV	Sim1:NM_011376:exon10:c.G1421A:p.G474D	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9826982	GGC	nonsynonymous	AGGC	11	AGGCAGGCAGG	NA
M2	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	66	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.73540967	1	0.6344825	TAC	synonymous	NA	NA	NA	NA
M2	chr10	52436631	12A2p6	cell line	sgMsh2	52436631	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	189	199	48	0.24120603	exonic	Nus1	synonymous SNV	Nus1:NM_030250:exon5:c.G858A:p.R286R	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999997	GGC	synonymous	NA	NA	NA	NA
M2	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	185	156	43	0.275641026	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.73540967	2	0.8262479	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	58478457	12A2p6	cell line	sgMsh2	58478457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	68	225	44	0.195555556	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A4998G:p.E1666E	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	AAT	synonymous	NA	NA	NA	NA
M2	chr10	59222288	12A2p6	cell line	sgMsh2	59222288	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	60	16	2	0.125	exonic	Sowahc	frameshift deletion	Sowahc:NM_172939:exon1:c.245delC:p.P84Rfs*14	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	39	54	12	0.222222222	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	CAC	synonymous	NA	NA	NA	NA
M2	chr10	59425458	12A2p6	cell line	sgMsh2	59425458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	125	23	0	0	exonic	Oit3	synonymous SNV	Oit3:NM_010959:exon8:c.A1386G:p.S462S	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999725	CTG	synonymous	NA	NA	NA	NA
M2	chr10	59448846	12A2p6	cell line	sgMsh2	59448846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	83	478	89	0.186192469	exonic	Mcu	nonsynonymous SNV	Mcu:NM_001033259:exon8:c.C988T:p.L330F	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9990661	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	106	39	10	0.256410256	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9996059	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	81	69	17	0.246376812	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	191	24	9	0.375	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.916110331	1	0.999945	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	81	90	18	0.2	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	64088473	12A2p6	cell line	sgMsh2	64088473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	171	0	0	NA	exonic	Lrrtm3	nonsynonymous SNV	Lrrtm3:NM_178678:exon2:c.A914G:p.N305S	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9999983	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr10	64945940	12A2p6	cell line	sgMsh2	64945940	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	199	0	0	NA	exonic	Ctnna3	synonymous SNV	"Ctnna3:NM_001164519:exon11:c.T1380C:p.H460H,Ctnna3:NM_001164376:exon16:c.T2181C:p.H727H,Ctnna3:NM_177612:exon16:c.T2181C:p.H727H"	10qB5.1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	ATA	synonymous	NA	NA	NA	NA
M2	chr10	68096565	12A2p6	cell line	sgMsh2	68096565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	183	48	14	0.291666667	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A3506G:p.N1169S	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9987168	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	106	59	16	0.271186441	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.331984937	3	0.9836219	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr10	68533858	12A2p6	cell line	sgMsh2	68533858	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	49	0	0	NA	exonic	Cabcoco1	nonsynonymous SNV	Cabcoco1:NM_028491:exon2:c.C154A:p.Q52K	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9943084	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	154	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999964	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	75646598	12A2p6	cell line	sgMsh2	75646598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	61	32	3	0.09375	exonic	Cabin1	nonsynonymous SNV	Cabin1:NM_172549:exon37:c.G6510T:p.Q2170H	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	CCT	nonsynonymous	CTGG	8	CTGGCTGG	NA
M2	chr10	75859492	12A2p6	cell line	sgMsh2	75859492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	153	537	143	0.266294227	exonic	Mif	synonymous SNV	Mif:NM_010798:exon3:c.T333C:p.G111G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9638476	AAC	synonymous	NA	NA	NA	NA
M2	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	83	246	65	0.264227642	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994745	AAG	synonymous	NA	NA	NA	NA
M2	chr10	76182688	12A2p6	cell line	sgMsh2	76182688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	69	0	0	NA	exonic	Slc5a4a	nonsynonymous SNV	Slc5a4a:NM_133184:exon13:c.A1468G:p.M490V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	22	33	6	0.181818182	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.963277	CTA	synonymous	NA	NA	NA	NA
M2	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	118	55	9	0.163636364	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.999955	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	44	28	8	0.285714286	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9919335	CAC	synonymous	NA	NA	NA	NA
M2	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	140	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999904	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	115	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	AAG	synonymous	NA	NA	NA	NA
M2	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	78801841	12A2p6	cell line	sgMsh2	78801841	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	71	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.G1200T:p.E400D	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	8.76E-07	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M2	chr10	79612824	12A2p6	cell line	sgMsh2	79612824	A	-	Deletion	Strelka2;Vardict	2	0.1429	42	8	1	0.125	exonic	C2cd4c	frameshift deletion	"C2cd4c:NM_001168624:exon2:c.488delT:p.F163Sfs*38,C2cd4c:NM_198614:exon2:c.488delT:p.F163Sfs*38"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.600514524	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr10	79746551	12A2p6	cell line	sgMsh2	79746551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	20	1	0	0	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon1:c.T2C:p.M1T	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	9.94E-06	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	79781134	12A2p6	cell line	sgMsh2	79781134	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	46	6	1	0.166666667	exonic	Fstl3	synonymous SNV	Fstl3:NM_031380:exon4:c.T510G:p.A170A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9818514	CTC	synonymous	NA	NA	NA	NA
M2	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	41	61	14	0.229508197	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.8947748	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	80058105	12A2p6	cell line	sgMsh2	80058105	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	44	45	8	0.177777778	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon31:c.C3449T:p.A1150V,Sbno2:NM_183426:exon31:c.C3452T:p.A1151V"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	31	20	5	0.25	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9765106	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	106	27	7	0.259259259	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9998379	GAC	synonymous	NA	NA	NA	NA
M2	chr10	80287637	12A2p6	cell line	sgMsh2	80287637	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	37	95	19	0.2	exonic	Dazap1	frameshift deletion	"Dazap1:NM_001122604:exon12:c.1147delC:p.A385Lfs*36,Dazap1:NM_001122605:exon12:c.1147delC:p.A385Lfs*36,Dazap1:NM_001378995:exon12:c.1150delC:p.A386Lfs*36,Dazap1:NM_133188:exon12:c.1144delC:p.A384Lfs*36"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.756421374	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	55	1	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.996258	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M2	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	43	1	1	1	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9913518	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	32	1	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.09345266	GTA	synonymous	NA	NA	NA	NA
M2	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	32	59	10	0.169491525	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.09345266	GTA	synonymous	NA	NA	NA	NA
M2	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	40	8	3	0.375	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9664194	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr10	80326011	12A2p6	cell line	sgMsh2	80326011	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	74	4	2	0.5	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon4:c.T446A:p.V149E	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9985122	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	26	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.672374555	1	0.6707091	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80360753	12A2p6	cell line	sgMsh2	80360753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	68	0	0	NA	exonic	Plk5	synonymous SNV	"Plk5:NM_001347124:exon9:c.C1038T:p.A346A,Plk5:NM_183152:exon9:c.C1050T:p.A350A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	CCG	synonymous	NA	NA	NA	NA
M2	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	36	4	1	0.25	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9859386	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	94	72	18	0.25	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	95	97	19	0.195876289	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9995628	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	86	90	19	0.211111111	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.760623715	1	0.7145538	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	80721625	12A2p6	cell line	sgMsh2	80721625	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	56	66	11	0.166666667	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon10:c.C872T:p.S291F	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9859272	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	51	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	9.47E-07	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	57	33	7	0.212121212	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9967467	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	102	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9951685	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	96	15	4	0.266666667	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.445448143	2	0.9492722	TTG	synonymous	NA	NA	NA	NA
M2	chr10	85629240	12A2p6	cell line	sgMsh2	85629240	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	127	31	6	0.193548387	exonic	Btbd11	nonsynonymous SNV	"Btbd11:NM_001017525:exon5:c.C536T:p.S179F,Btbd11:NM_028709:exon7:c.C1943T:p.S648F"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	TCC	nonsynonymous	ATCC	8	ATCCATCC	NA
M2	chr10	86694552	12A2p6	cell line	sgMsh2	86694552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	122	1884	423	0.224522293	exonic	Hsp90b1	nonsynonymous SNV	Hsp90b1:NM_011631:exon12:c.A1442G:p.N481S	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.999966	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	74	52	15	0.288461538	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	61	46	8	0.173913043	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	94	60	14	0.233333333	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr10	92714090	12A2p6	cell line	sgMsh2	92714090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	86	92	29	0.315217391	exonic	Nedd1	nonsynonymous SNV	Nedd1:NM_008682:exon4:c.T332C:p.L111P	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995743	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	94789743	12A2p6	cell line	sgMsh2	94789743	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	102	63	8	0.126984127	exonic	Cep83	synonymous SNV	Cep83:NM_029852:exon16:c.A2014C:p.R672R	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	AAG	synonymous	NA	NA	NA	NA
M2	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	91	462	111	0.24025974	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	99124951	12A2p6	cell line	sgMsh2	99124951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	157	43	10	0.23255814	exonic	Poc1b	nonsynonymous SNV	Poc1b:NM_027740:exon3:c.T221C:p.L74P	10qC3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999971	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr10	103173380	12A2p6	cell line	sgMsh2	103173380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	85	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	Lrriq1:NM_001163559:exon15:c.A3241G:p.T1081A	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	103234124	12A2p6	cell line	sgMsh2	103234124	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	91	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	"Lrriq1:NM_001163559:exon2:c.G30T:p.K10N,Lrriq1:NM_001361058:exon2:c.G30T:p.K10N,Lrriq1:NM_029134:exon2:c.G30T:p.K10N"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.9165496	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr10	105829867	12A2p6	cell line	sgMsh2	105829867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	187	21	3	0.142857143	exonic	Mettl25	nonsynonymous SNV	"Mettl25:NM_207522:exon3:c.A497G:p.D166G,Mettl25:NM_001359640:exon4:c.A62G:p.D21G,Mettl25:NM_001359642:exon4:c.A62G:p.D21G"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	85	183	27	0.147540984	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	109767508	12A2p6	cell line	sgMsh2	109767508	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	137	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon15:c.G3179A:p.G1060E,Nav3:NM_001368815:exon15:c.G3179A:p.G1060E"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9707653	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr10	110000122	12A2p6	cell line	sgMsh2	110000122	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	97	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon1:c.T98A:p.V33E,Nav3:NM_001368815:exon1:c.T98A:p.V33E"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.78163542	1	0.8164151	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	110949649	12A2p6	cell line	sgMsh2	110949649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	28	8	0.285714286	exonic	Zdhhc17	nonsynonymous SNV	"Zdhhc17:NM_001359622:exon12:c.A1271G:p.D424G,Zdhhc17:NM_001359624:exon12:c.A485G:p.D162G,Zdhhc17:NM_172554:exon12:c.A1301G:p.D434G"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9981711	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	98	47	11	0.234042553	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	TAC	synonymous	NA	NA	NA	NA
M2	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	140	3	1	0.333333333	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.722802647	2	0.7937735	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	117787825	12A2p6	cell line	sgMsh2	117787825	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	107	98	8	0.081632653	exonic	Nup107	stopgain	Nup107:NM_134010:exon4:c.C274T:p.Q92X	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	TGT	nonsynonymous	TG	8	TGTGTGTG	NA
M2	chr10	120089680	12A2p6	cell line	sgMsh2	120089680	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	74	7	3	0.428571429	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon12:c.T2791A:p.S931T	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9962361	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	36	4	0	0	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9859386	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M2	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	65	1	0	0	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.8000306	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	129	91	19	0.208791209	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9921586	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr10	121654883	12A2p6	cell line	sgMsh2	121654883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	130	0	0	NA	exonic	D930020B18Rik	synonymous SNV	D930020B18Rik:NM_177335:exon2:c.T387C:p.A129A	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999806	CTC	synonymous	NA	NA	NA	NA
M2	chr10	121870354	12A2p6	cell line	sgMsh2	121870354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	46	84	21	0.25	exonic	Srgap1	nonsynonymous SNV	"Srgap1:NM_001081037:exon5:c.A646G:p.K216E,Srgap1:NM_001242411:exon5:c.A646G:p.K216E"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.714397965	1	0.6421851	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr10	123032631	12A2p6	cell line	sgMsh2	123032631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	81	22	0.271604938	exonic	Mon2	synonymous SNV	"Mon2:NM_001163024:exon12:c.T1516C:p.L506L,Mon2:NM_001163025:exon12:c.T1516C:p.L506L,Mon2:NM_153395:exon12:c.T1516C:p.L506L"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9978629	AAC	synonymous	NA	NA	NA	NA
M2	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	108	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9849611	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	54	13	4	0.307692308	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.458055166	2	0.9225036	CCG	synonymous	NA	NA	NA	NA
M2	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	146	61	8	0.131147541	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.878289263	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	111	4	2	0.5	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999264	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	106	88	24	0.272727273	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	81	127	33	0.25984252	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	AAC	synonymous	NA	NA	NA	NA
M2	chr10	128018006	12A2p6	cell line	sgMsh2	128018006	G	A	SNV	Mutect2;Vardict	2	0.022	293	51	0	0	exonic	Prim1	nonsynonymous SNV	Prim1:NM_008921:exon3:c.G292A:p.A98T	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.092451501	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	168	213	68	0.319248826	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	CAC	synonymous	NA	NA	NA	NA
M2	chr10	128210887	12A2p6	cell line	sgMsh2	128210887	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	84	44	15	0.340909091	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.C590A:p.T197N	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr10	128241324	12A2p6	cell line	sgMsh2	128241324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	80	15	6	0.4	exonic	Timeless	nonsynonymous SNV	"Timeless:NM_001136082:exon6:c.T479C:p.L160P,Timeless:NM_001164080:exon6:c.T479C:p.L160P,Timeless:NM_001164081:exon6:c.T479C:p.L160P,Timeless:NM_011589:exon6:c.T479C:p.L160P"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr10	128671299	12A2p6	cell line	sgMsh2	128671299	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	131	121	19	0.157024793	exonic	Suox	nonsynonymous SNV	Suox:NM_173733:exon4:c.G859T:p.G287W	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	170	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.9517383	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.160317559	NA	2	1	1	0.9967467	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M2	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr10	129691213	12A2p6	cell line	sgMsh2	129691213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	115	0	0	NA	exonic	Olfr803	nonsynonymous SNV	Olfr803:NM_146554:exon1:c.G827T:p.S276I	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr10	129768203	12A2p6	cell line	sgMsh2	129768203	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	100	0	0	NA	exonic	Olfr808	frameshift deletion	Olfr808:NM_146928:exon1:c.706delT:p.S237Pfs*6	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr10	129856980	12A2p6	cell line	sgMsh2	129856980	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	369	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T461A:p.I154N	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATT	nonsynonymous	T	5	TTTTT	NA
M2	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	209	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	236	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	345	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	100	47	8	0.170212766	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.78163542	1	0.8153468	CTG	synonymous	NA	NA	NA	NA
M2	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	64	1	0	0	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9859742	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	4239926	12A2p6	cell line	sgMsh2	4239926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	19	0	0	NA	exonic	Osm	nonsynonymous SNV	Osm:NM_001013365:exon3:c.A709G:p.T237A	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	2	1	1	0.9550432	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	45	60	25	0.416666667	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	5717594	12A2p6	cell line	sgMsh2	5717594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	63	53	9	0.169811321	exonic	Urgcp	nonsynonymous SNV	"Urgcp:NM_001361591:exon4:c.A743G:p.D248G,Urgcp:NM_001361592:exon4:c.A647G:p.D216G,Urgcp:NM_001361589:exon5:c.A743G:p.D248G,Urgcp:NM_001077661:exon6:c.A743G:p.D248G,Urgcp:NM_001361590:exon6:c.A743G:p.D248G,Urgcp:NM_178623:exon6:c.A872G:p.D291G,Urgcp:NM_001361588:exon7:c.A743G:p.D248G"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.722802647	1	0.5843535	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	104	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	59	49	11	0.224489796	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.8965332	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	6415926	12A2p6	cell line	sgMsh2	6415926	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	75	12	2	0.166666667	exonic	Ppia	nonsynonymous SNV	Ppia:NM_008907:exon1:c.G16A:p.V6M	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	134	2	0	0	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	7064008	12A2p6	cell line	sgMsh2	7064008	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	39	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon1:c.T409A:p.C137S	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9546222	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	64	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9955706	GTG	synonymous	NA	NA	NA	NA
M2	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	53	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	GTC	synonymous	NA	NA	NA	NA
M2	chr11	11352523	12A2p6	cell line	sgMsh2	11352523	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	68	0	0	NA	exonic	Zpbp	stopgain	"Zpbp:NM_001185153:exon7:c.T960A:p.C320X,Zpbp:NM_015785:exon7:c.T1131A:p.C377X"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.689183919	2	0.629235	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	86	2	0	0	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9982105	TTA	synonymous	NA	NA	NA	NA
M2	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	134	703	152	0.216216216	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	GCA	synonymous	NA	NA	NA	NA
M2	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	121	7	2	0.285714286	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7497501	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	21996529	12A2p6	cell line	sgMsh2	21996529	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.201	29	0	0	NA	exonic	Otx1	nonsynonymous SNV	Otx1:NM_011023:exon5:c.A779G:p.H260R	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.09439235	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	22007167	12A2p6	cell line	sgMsh2	22007167	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	59	23	8	0.347826087	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon24:c.G3521T:p.R1174L,Ehbp1:NM_153078:exon24:c.G3446T:p.R1149L"	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr11	22973298	12A2p6	cell line	sgMsh2	22973298	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	20	48	15	0.3125	exonic	Zrsr1	nonsynonymous SNV	Zrsr1:NM_011663:exon1:c.A71C:p.E24A	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	9.94E-06	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	22997151	12A2p6	cell line	sgMsh2	22997151	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.194	94	831	155	0.186522262	exonic	Cct4	nonsynonymous SNV	Cct4:NM_009837:exon6:c.T641A:p.L214H	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9275674	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	109	11	3	0.272727273	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M2	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	169	126	21	0.166666667	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	166	69	15	0.217391304	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999876	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	121	46	11	0.239130435	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9505793	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr11	32422292	12A2p6	cell line	sgMsh2	32422292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	59	108	19	0.175925926	exonic	Sh3pxd2b	nonsynonymous SNV	Sh3pxd2b:NM_177364:exon13:c.A1458C:p.K486N	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	2	1	1	0.9971718	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	102	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9995036	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	159	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.9357179	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	83	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9966642	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	168	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	82	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	2	1	1	0.9994363	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	140	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999904	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M2	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	168	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9990487	GTT	synonymous	NA	NA	NA	NA
M2	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	146	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999937	CTG	synonymous	NA	NA	NA	NA
M2	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	94	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	157	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.9967848	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	193	44	2	0.045454545	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	AAC	synonymous	AACA	8	AACAAACA	NA
M2	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	60	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.997363	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	46199121	12A2p6	cell line	sgMsh2	46199121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	54	0	0	NA	exonic	Cyfip2	nonsynonymous SNV	"Cyfip2:NM_001252459:exon30:c.G3464A:p.G1155D,Cyfip2:NM_001252460:exon30:c.G3464A:p.G1155D,Cyfip2:NM_133769:exon30:c.G3464A:p.G1155D"	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	2	1	1	0.9959869	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr11	46238053	12A2p6	cell line	sgMsh2	46238053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	64	0	0	NA	exonic	Fndc9	nonsynonymous SNV	Fndc9:NM_177075:exon2:c.T398C:p.L133P	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	46240065	12A2p6	cell line	sgMsh2	46240065	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	126	0	0	NA	exonic	Cyfip2	nonsynonymous SNV	"Cyfip2:NM_001252459:exon23:c.C2612G:p.T871S,Cyfip2:NM_001252460:exon23:c.C2612G:p.T871S,Cyfip2:NM_133769:exon23:c.C2612G:p.T871S"	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9975277	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	98	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9993748	ATG	synonymous	NA	NA	NA	NA
M2	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	319	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	1.20E-09	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	243	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	7.94E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	76	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.680779237	2	0.7322604	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	39	7	1	0.142857143	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	106	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9990423	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	77	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.73540967	1	0.5881648	GCC	synonymous	NA	NA	NA	NA
M2	chr11	50883265	12A2p6	cell line	sgMsh2	50883265	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	85	0	0	NA	exonic	Zfp454	stopgain	"Zfp454:NM_001382452:exon3:c.G70T:p.G24X,Zfp454:NM_001382453:exon3:c.G70T:p.G24X,Zfp454:NM_001382456:exon3:c.G70T:p.G24X,Zfp454:NM_001382457:exon3:c.G73T:p.G25X,Zfp454:NM_001382449:exon4:c.G169T:p.G57X,Zfp454:NM_001382450:exon4:c.G169T:p.G57X,Zfp454:NM_001382451:exon4:c.G172T:p.G58X,Zfp454:NM_172794:exon4:c.G172T:p.G58X"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.999488	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	51007844	12A2p6	cell line	sgMsh2	51007844	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	150	0	0	NA	exonic	Olfr51	nonsynonymous SNV	Olfr51:NM_146909:exon1:c.C871A:p.L291M	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9983343	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	103	26	0.252427184	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9998106	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr11	51600581	12A2p6	cell line	sgMsh2	51600581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	125	140	36	0.257142857	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon12:c.A1316G:p.K439R,Phykpl:NM_028398:exon12:c.A1316G:p.K439R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.999553	AAA	nonsynonymous	A	5	AAAAA	NA
M2	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	10	3	0.3	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	135	368	11	0.029891304	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.991752469	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	39	88	27	0.306818182	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	84	50	11	0.22	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	GTA	synonymous	NA	NA	NA	NA
M2	chr11	53954866	12A2p6	cell line	sgMsh2	53954866	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	124	2	2	1	exonic	Slc22a21	synonymous SNV	"Slc22a21:NM_001362202:exon6:c.T570A:p.L190L,Slc22a21:NM_019723:exon7:c.T1098A:p.L366L"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	CAA	synonymous	NA	NA	NA	NA
M2	chr11	54660903	12A2p6	cell line	sgMsh2	54660903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	140	78	17	0.217948718	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon19:c.A2581G:p.T861A,Rapgef6:NM_001252494:exon20:c.A2596G:p.T866A,Rapgef6:NM_001252496:exon20:c.A2596G:p.T866A"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9981298	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	160	5	1	0.2	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9999911	AAC	nonsynonymous	A	5	AAAAA	NA
M2	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	48	107	23	0.214953271	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	GTA	synonymous	NA	NA	NA	NA
M2	chr11	55262755	12A2p6	cell line	sgMsh2	55262755	C	-	Deletion	Mutect2;Strelka2	2	0.301	106	26	4	0.153846154	exonic	Fat2	frameshift deletion	Fat2:NM_001029988:exon18:c.10630delG:p.E3544Rfs*8	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	TCC	9	TCCTCCTCC	-1
M2	chr11	55262757	12A2p6	cell line	sgMsh2	55262757	C	T	SNV	Mutect2;Strelka2	2	0.301	106	28	4	0.142857143	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon18:c.G10628A:p.G3543E	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	CCC	nonsynonymous	TCC	9	TCCTCCTCC	NA
M2	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	60	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.600934759	2	0.8830492	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	57507521	12A2p6	cell line	sgMsh2	57507521	A	G	SNV	Mutect2;Vardict	2	0.044	117	207	8	0.038647343	exonic	Fam114a2	nonsynonymous SNV	"Fam114a2:NM_001168667:exon6:c.T569C:p.L190P,Fam114a2:NM_001168668:exon6:c.T590C:p.L197P,Fam114a2:NM_026342:exon6:c.T569C:p.L190P"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.184903003	3	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	121	50	12	0.24	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999635	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M2	chr11	58047787	12A2p6	cell line	sgMsh2	58047787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	145	233	62	0.266094421	exonic	Larp1	nonsynonymous SNV	Larp1:NM_028451:exon9:c.A1395G:p.I465M	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.99979	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	58111285	12A2p6	cell line	sgMsh2	58111285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	94	221	48	0.21719457	exonic	Cnot8	nonsynonymous SNV	"Cnot8:NM_001356477:exon3:c.T143C:p.V48A,Cnot8:NM_001363086:exon3:c.T143C:p.V48A,Cnot8:NM_026949:exon3:c.T143C:p.V48A,Cnot8:NM_001363084:exon4:c.T143C:p.V48A,Cnot8:NM_001363085:exon4:c.T143C:p.V48A"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9943828	GTA	nonsynonymous	TGT	9	TGTTGTTGT	NA
M2	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.207	39	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9412475	CTG	synonymous	NA	NA	NA	NA
M2	chr11	58651466	12A2p6	cell line	sgMsh2	58651466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	116	0	0	NA	exonic	Trim58	synonymous SNV	Trim58:NM_001039047:exon6:c.A1251G:p.E417E	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.9183044	AAG	synonymous	NA	NA	NA	NA
M2	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	362	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	2.15E-09	AGT	synonymous	NA	NA	NA	NA
M2	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.093	397	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.39081771	3	0.9947426	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M2	chr11	59134662	12A2p6	cell line	sgMsh2	59134662	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	24	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon2:c.G1141A:p.E381K,Obscn:NM_199152:exon2:c.G1141A:p.E381K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9170212	TCC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M2	chr11	59249649	12A2p6	cell line	sgMsh2	59249649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	74	0	0	NA	exonic	Wnt3a	nonsynonymous SNV	Wnt3a:NM_009522:exon4:c.A1040G:p.D347G	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.697588601	2	6.85E-07	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	59749606	12A2p6	cell line	sgMsh2	59749606	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	130	626	151	0.241214058	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_001368931:exon13:c.G1804T:p.A602S,Mprip:NM_012027:exon13:c.G1450T:p.A484S,Mprip:NM_201245:exon13:c.G1450T:p.A484S"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9978409	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr11	60497855	12A2p6	cell line	sgMsh2	60497855	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	74	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_182698:exon25:c.C2405A:p.P802H,Myo15:NM_001103171:exon26:c.C5966A:p.P1989H,Myo15:NM_010862:exon27:c.C6020A:p.P2007H"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	37	69	11	0.15942029	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.8908679	ACG	synonymous	NA	NA	NA	NA
M2	chr11	60718871	12A2p6	cell line	sgMsh2	60718871	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	94	243	48	0.197530864	exonic	Flii	nonsynonymous SNV	"Flii:NM_001302207:exon16:c.C1906A:p.L636I,Flii:NM_022009:exon16:c.C1909A:p.L637I"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9993095	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	144	31	0.215277778	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	83	177	44	0.248587571	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994745	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	85	224	7	0.03125	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.227	217	1621	460	0.283775447	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9999988	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr11	65008313	12A2p6	cell line	sgMsh2	65008313	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.292	66	5	0	0	exonic	Arhgap44	frameshift deletion	"Arhgap44:NM_001099288:exon19:c.2037delC:p.Y680Mfs*2,Arhgap44:NM_175003:exon19:c.2037delC:p.Y680Mfs*2"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	95	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	84	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	0.6696428	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	67101612	12A2p6	cell line	sgMsh2	67101612	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	55	0	0	NA	exonic	Myh3	stopgain	Myh3:NM_001099635:exon40:c.G5743T:p.E1915X	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9710467	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	159	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999438	GTG	synonymous	NA	NA	NA	NA
M2	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	174	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9989938	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	222	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9984505	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr11	67245762	12A2p6	cell line	sgMsh2	67245762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	119	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.C1365A:p.P455P	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	CCC	synonymous	NA	NA	NA	NA
M2	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	126	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	42	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9907285	AAC	synonymous	NA	NA	NA	NA
M2	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	245	57	5	0.087719298	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	7.03E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	69476496	12A2p6	cell line	sgMsh2	69476496	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	50	1	0	0	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon35:c.G5478A:p.T1826T	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	1	1	0.9946923	CCG	synonymous	NA	NA	NA	NA
M2	chr11	69562765	12A2p6	cell line	sgMsh2	69562765	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	48	10	2	0.2	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon7:c.G1000T:p.G334C,Wrap53:NM_001364769:exon8:c.G1000T:p.G334C"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.748016693	1	0.7449621	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	45	19	7	0.368421053	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.8985566	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	67	93	18	0.193548387	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.970740764	1	0.9969065	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	69881687	12A2p6	cell line	sgMsh2	69881687	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	85	3	1	0.333333333	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon22:c.C2161A:p.L721I	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.9539314	1	0.9983233	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	69882436	12A2p6	cell line	sgMsh2	69882436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	142	3	0	0	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon20:c.G2018A:p.G673D	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999917	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr11	69903065	12A2p6	cell line	sgMsh2	69903065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	14	4	0.285714286	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001013414:exon2:c.T346C:p.L116L,Neurl4:NM_001291118:exon2:c.T346C:p.L116L,Neurl4:NM_001291119:exon2:c.T346C:p.L116L"	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.853075217	1	0.9645728	GTT	synonymous	NA	NA	NA	NA
M2	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	41	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.009939273	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	70017427	12A2p6	cell line	sgMsh2	70017427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	65	0	0	NA	exonic	Dlg4	synonymous SNV	Dlg4:NM_001370675:exon2:c.A25C:p.R9R	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.630351145	2	0.845606	CAG	synonymous	NA	NA	NA	NA
M2	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	59	18	3	0.166666667	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9971718	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	50	0	0	NA	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.878289263	1	0.9612169	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M2	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	1	1	1	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.69338626	2	0.8240038	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	48	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	2	1	1	0.9938968	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	73787842	12A2p6	cell line	sgMsh2	73787842	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	99	0	0	NA	exonic	Olfr390	frameshift deletion	Olfr390:NM_146347:exon1:c.903delA:p.V304Cfs*8	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.916110331	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr11	74054527	12A2p6	cell line	sgMsh2	74054527	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	144	0	0	NA	exonic	Olfr399	synonymous SNV	Olfr399:NM_147004:exon1:c.T231C:p.I77I	11qB4	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999927	TAA	synonymous	NA	NA	NA	NA
M2	chr11	74657203	12A2p6	cell line	sgMsh2	74657203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	90	81	21	0.259259259	exonic	Cluh	synonymous SNV	"Cluh:NM_001081158:exon3:c.G339A:p.Q113Q,Cluh:NM_001368711:exon4:c.G225A:p.Q75Q"	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9996785	AGG	synonymous	NA	NA	NA	NA
M2	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	66	33	5	0.151515152	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.483269211	2	0.9744603	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	28	2	1	0.5	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9755977	CTT	synonymous	NA	NA	NA	NA
M2	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	150	156	21	0.134615385	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999952	CAC	synonymous	NA	NA	NA	NA
M2	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	62	96	23	0.239583333	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.769028397	1	0.7884093	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	24	9	4	0.444444444	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	2	1	1	0.9679362	GTA	synonymous	NA	NA	NA	NA
M2	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	95	19	3	0.157894737	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9997737	ATG	synonymous	NA	NA	NA	NA
M2	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	50	11	2	0.181818182	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9946923	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	77476630	12A2p6	cell line	sgMsh2	77476630	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	77	72	6	0.083333333	exonic	Ankrd13b	frameshift deletion	"Ankrd13b:NM_001373882:exon5:c.537delG:p.N180Ifs*51,Ankrd13b:NM_001373883:exon5:c.537delG:p.N180Ifs*51,Ankrd13b:NM_172945:exon5:c.537delG:p.N180Ifs*51"	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	42	163	55	0.337423313	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	2	1	1	0.9907285	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	65	44	13	0.295454545	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.958133741	1	0.9954222	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	78328780	12A2p6	cell line	sgMsh2	78328780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	37	51	11	0.215686275	exonic	Pigs	nonsynonymous SNV	Pigs:NM_201406:exon2:c.T83C:p.I28T	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.739612011	1	0.7535003	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	61	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.9975414	CTG	synonymous	NA	NA	NA	NA
M2	chr11	79471482	12A2p6	cell line	sgMsh2	79471482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	120	56	2	0.035714286	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon34:c.A4484G:p.N1495S	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.315175573	3	0.9975928	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	78	94	20	0.212765957	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.958133741	1	0.997793	CTA	synonymous	NA	NA	NA	NA
M2	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	119	189	30	0.158730159	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	1	1	0.999958	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	82444508	12A2p6	cell line	sgMsh2	82444508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	56	0	0	NA	exonic	Tmem132e	synonymous SNV	Tmem132e:NM_001304439:exon9:c.T2415C:p.A805A	11qC	chr11-69590981-82929860	4	3	1	0.99	4.160317559	NA	1	0.932919695	1	0.9879409	CTA	synonymous	CTA	8	CTACTACT	NA
M2	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	150	81	24	0.296296296	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9999416	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	139	90	30	0.333333333	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9995908	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	85022191	12A2p6	cell line	sgMsh2	85022191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	90	108	18	0.166666667	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon24:c.A2890G:p.I964V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	222	10	3	0.3	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	3.13E-08	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	191	15	2	0.133333333	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999997	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	122	62	13	0.209677419	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9998143	CAA	synonymous	CCT	8	CCTCCTCC	NA
M2	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	85	4	1	0.25	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.672374555	2	0.8273131	CCA	synonymous	NA	NA	NA	NA
M2	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	200	20	5	0.25	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9997991	CTA	synonymous	NA	NA	NA	NA
M2	chr11	86661194	12A2p6	cell line	sgMsh2	86661194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	113	364	85	0.233516484	exonic	Vmp1	nonsynonymous SNV	"Vmp1:NM_001356531:exon5:c.T343C:p.Y115H,Vmp1:NM_001379040:exon5:c.T343C:p.Y115H,Vmp1:NM_001379041:exon5:c.T343C:p.Y115H,Vmp1:NM_029478:exon5:c.T343C:p.Y115H"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.705993283	2	0.8001452	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	86661218	12A2p6	cell line	sgMsh2	86661218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	386	94	0.243523316	exonic	Vmp1	nonsynonymous SNV	"Vmp1:NM_001356531:exon5:c.G319A:p.E107K,Vmp1:NM_001379040:exon5:c.G319A:p.E107K,Vmp1:NM_001379041:exon5:c.G319A:p.E107K,Vmp1:NM_029478:exon5:c.G319A:p.E107K"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9405826	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	74	198	45	0.227272727	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9148071	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	88	69	16	0.231884058	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.668172214	2	0.8588435	ACG	nonsynonymous	NA	NA	NA	NA
M2	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	40	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9893454	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	172	14	2	0.142857143	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.999999	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr11	89434655	12A2p6	cell line	sgMsh2	89434655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	108	0	0	NA	exonic	Ankfn1	nonsynonymous SNV	Ankfn1:NM_001327810:exon14:c.A1762G:p.T588A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.998991	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	102	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	63	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9978629	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	80	11	2	0.181818182	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	94951579	12A2p6	cell line	sgMsh2	94951579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	65	0	0	NA	exonic	Col1a1	nonsynonymous SNV	Col1a1:NM_007742:exon51:c.A4322G:p.Q1441R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.9672075	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	100	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.9593614	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	94971358	12A2p6	cell line	sgMsh2	94971358	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	37	0	0	NA	exonic	Sgca	nonsynonymous SNV	Sgca:NM_009161:exon6:c.G467A:p.R156H	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9854991	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	79	65	12	0.184615385	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	97139476	12A2p6	cell line	sgMsh2	97139476	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	29	5	2	0.4	exonic	Tbkbp1	synonymous SNV	"Tbkbp1:NM_001372527:exon8:c.C987T:p.N329N,Tbkbp1:NM_001372528:exon8:c.C987T:p.N329N,Tbkbp1:NM_001372529:exon8:c.C990T:p.N330N,Tbkbp1:NM_001372530:exon8:c.C990T:p.N330N,Tbkbp1:NM_001372531:exon8:c.C990T:p.N330N,Tbkbp1:NM_198100:exon8:c.C987T:p.N329N"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9772149	CGT	synonymous	NA	NA	NA	NA
M2	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	88	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.99963	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	856	214	0.25	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	ATG	synonymous	NA	NA	NA	NA
M2	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	47	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9934558	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.2286	35	50	4	0.08	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.960655146	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M2	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	106	59	14	0.237288136	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	AAG	synonymous	NA	NA	NA	NA
M2	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	127	1	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	CAT	synonymous	NA	NA	NA	NA
M2	chr11	99004220	12A2p6	cell line	sgMsh2	99004220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	131	162	29	0.179012346	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon21:c.T2553C:p.G851G	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999354	CAC	synonymous	NA	NA	NA	NA
M2	chr11	99022840	12A2p6	cell line	sgMsh2	99022840	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	154	108	0	0	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon2:c.G174A:p.Q58Q	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999964	CCT	synonymous	NA	NA	NA	NA
M2	chr11	99051469	12A2p6	cell line	sgMsh2	99051469	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	46	1934	383	0.19803516	exonic	Igfbp4	nonsynonymous SNV	Igfbp4:NM_010517:exon4:c.C655T:p.R219C	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9735392	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr11	100516826	12A2p6	cell line	sgMsh2	100516826	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	68	402	80	0.199004975	exonic	Acly	nonsynonymous SNV	"Acly:NM_001199296:exon7:c.T697A:p.W233R,Acly:NM_134037:exon7:c.T697A:p.W233R"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	100874941	12A2p6	cell line	sgMsh2	100874941	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	38	6	1	0.166666667	exonic	Stat5a	synonymous SNV	"Stat5a:NM_001164062:exon8:c.G852A:p.E284E,Stat5a:NM_001362680:exon9:c.G852A:p.E284E,Stat5a:NM_011488:exon9:c.G852A:p.E284E"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9877585	AGA	synonymous	NA	NA	NA	NA
M2	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	96	71	23	0.323943662	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	111	19	3	0.157894737	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.999126	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	101275013	12A2p6	cell line	sgMsh2	101275013	T	C	SNV	Mutect2;Vardict	2	0.095	45	27	11	0.407407407	exonic	Wnk4	nonsynonymous SNV	Wnk4:NM_175638:exon14:c.T2365C:p.W789R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.399222392	2	0.6982512	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	101524475	12A2p6	cell line	sgMsh2	101524475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	171	37	10	0.27027027	exonic	Brca1	synonymous SNV	Brca1:NM_009764:exon10:c.G2832A:p.G944G	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999989	CCC	synonymous	NA	NA	NA	NA
M2	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	72	258	71	0.275193798	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9630823	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	39	5	0	0	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9885792	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr11	102457243	12A2p6	cell line	sgMsh2	102457243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	41	0	0	NA	exonic	Itga2b	nonsynonymous SNV	Itga2b:NM_010575:exon25:c.A2531G:p.Y844C	11qD	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.009939273	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994363	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	79	21	7	0.333333333	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	CCC	nonsynonymous	C	5	CCCCC	NA
M2	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	59	38	8	0.210526316	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.82365883	1	0.9173259	GTC	synonymous	NA	NA	NA	NA
M2	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	80	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	TTC	synonymous	NA	NA	NA	NA
M2	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	44	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9919335	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr11	103863242	12A2p6	cell line	sgMsh2	103863242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	109	42	4	0.095238095	exonic	Nsf	synonymous SNV	Nsf:NM_008740:exon13:c.A1467G:p.K489K	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	GTT	synonymous	NA	NA	NA	NA
M2	chr11	103928745	12A2p6	cell line	sgMsh2	103928745	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	109	37	5	0.135135135	exonic	Nsf	nonsynonymous SNV	Nsf:NM_008740:exon3:c.A197C:p.Q66P	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	115	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	160	281	70	0.24911032	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9990239	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	79	34	8	0.235294118	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	45	89	20	0.224719101	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M2	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	58	42	12	0.285714286	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9942333	ATA	synonymous	ATAA	8	ATAAATAA	NA
M2	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	124	26	8	0.307692308	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9895057	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	110148803	12A2p6	cell line	sgMsh2	110148803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	180	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon10:c.T1383C:p.D461D	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	GAT	synonymous	NA	NA	NA	NA
M2	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.208	200	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.999386	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	88	58	18	0.310344828	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.6051371	2	0.9746488	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	113842948	12A2p6	cell line	sgMsh2	113842948	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	34	0	0	NA	exonic	Sdk2	frameshift deletion	Sdk2:NM_172800:exon19:c.2668delC:p.Q890Sfs*15	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	89	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	CTT	synonymous	NA	NA	NA	NA
M2	chr11	114864258	12A2p6	cell line	sgMsh2	114864258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	75	0	0	NA	exonic	Gprc5c	nonsynonymous SNV	"Gprc5c:NM_001110337:exon2:c.A760G:p.I254V,Gprc5c:NM_001110338:exon2:c.A760G:p.I254V,Gprc5c:NM_147217:exon2:c.A760G:p.I254V"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9976471	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	272	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9999944	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr11	114987446	12A2p6	cell line	sgMsh2	114987446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	255	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.T239C:p.V80A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	3.99E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	64	124	25	0.201612903	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.194	25	12	2	0.166666667	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.874534	GTT	synonymous	NA	NA	NA	NA
M2	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	58	16	2	0.125	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	108	24	5	0.208333333	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9971043	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr11	116070235	12A2p6	cell line	sgMsh2	116070235	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	8	29	0	0	exonic	Unc13d	nonsynonymous SNV	Unc13d:NM_001009573:exon15:c.G1295T:p.R432I	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.09233105	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	77	164	43	0.262195122	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	116230003	12A2p6	cell line	sgMsh2	116230003	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	32	4	1	0.25	exonic	Evpl	nonsynonymous SNV	Evpl:NM_025276:exon12:c.G1405T:p.A469S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9327534	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	103	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9937898	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.165	26	46	10	0.217391304	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.69338626	1	0.000997289	CAC	synonymous	NA	NA	NA	NA
M2	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	4	4	1	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9113124	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	129	28	0.217054264	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994363	GTG	synonymous	NA	NA	NA	NA
M2	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	19	148	38	0.256756757	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9550432	CTT	synonymous	NA	NA	NA	NA
M2	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	58	30	8	0.266666667	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9426807	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr11	118485145	12A2p6	cell line	sgMsh2	118485145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	57	4	1	0.25	exonic	Engase	nonsynonymous SNV	"Engase:NM_001359368:exon10:c.T976C:p.Y326H,Engase:NM_172573:exon10:c.T1249C:p.Y417H"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9967467	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	36	13	6	0.461538462	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.8898711	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr11	119236268	12A2p6	cell line	sgMsh2	119236268	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	35	0	0	NA	exonic	Ccdc40	synonymous SNV	Ccdc40:NM_001364767:exon6:c.C1185T:p.G395G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9849311	GCT	synonymous	NA	NA	NA	NA
M2	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	73	36	3	0.083333333	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9352896	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	23	28	4	0.142857143	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9656829	CAG	synonymous	NA	NA	NA	NA
M2	chr11	119507365	12A2p6	cell line	sgMsh2	119507365	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.375	33	41	14	0.341463415	exonic	Endov	nonsynonymous SNV	"Endov:NM_177394:exon8:c.G706A:p.G236R,Endov:NM_001164636:exon9:c.G955A:p.G319R"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	2	1	1	0.9826982	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	124	65	16	0.246153846	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	44	20	6	0.3	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	TAC	nonsynonymous	C	5	CCCCC	NA
M2	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	127	1432	324	0.226256983	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	CTG	synonymous	NA	NA	NA	NA
M2	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	54	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9953494	GTG	synonymous	NA	NA	NA	NA
M2	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	48	232	45	0.193965517	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	75	156	37	0.237179487	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.760623715	1	0.7350727	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr11	120817145	12A2p6	cell line	sgMsh2	120817145	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	109	412	117	0.283980583	exonic	Fasn	nonsynonymous SNV	Fasn:NM_007988:exon13:c.T2080A:p.L694M	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr11	121160505	12A2p6	cell line	sgMsh2	121160505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	85	0	0	NA	exonic	Uts2r	nonsynonymous SNV	Uts2r:NM_145440:exon1:c.T194C:p.V65A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	80	15	5	0.333333333	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.609339441	2	0.9547428	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr11	121226793	12A2p6	cell line	sgMsh2	121226793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	136	48	14	0.291666667	exonic	Cybc1	synonymous SNV	"Cybc1:NM_001252548:exon4:c.T177C:p.A59A,Cybc1:NM_001252549:exon4:c.T177C:p.A59A,Cybc1:NM_001254735:exon4:c.T312C:p.A104A,Cybc1:NM_144832:exon4:c.T177C:p.A59A"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.9945119	CAG	synonymous	NA	NA	NA	NA
M2	chr11	121328398	12A2p6	cell line	sgMsh2	121328398	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	180	144	36	0.25	exonic	Wdr45b	nonsynonymous SNV	Wdr45b:NM_025793:exon10:c.T995C:p.V332A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr11	121341136	12A2p6	cell line	sgMsh2	121341136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	196	157	17	0.108280255	exonic	Wdr45b	frameshift deletion	Wdr45b:NM_025793:exon3:c.222delA:p.K74Nfs*8	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.160317559	NA	1	0.945526718	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	119	39	10	0.256410256	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M2	chr12	3906864	12A2p6	cell line	sgMsh2	3906864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	92	45	10	0.222222222	exonic	Dnmt3a	nonsynonymous SNV	"Dnmt3a:NM_153743:exon17:c.T1909C:p.W637R,Dnmt3a:NM_001271753:exon22:c.T2566C:p.W856R,Dnmt3a:NM_007872:exon22:c.T2566C:p.W856R"	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.932919695	1	0.9978303	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	77	12	2	0.166666667	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.78163542	1	0.8234142	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	88	101	11	0.108910891	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.638755827	2	0.9350053	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr12	4770156	12A2p6	cell line	sgMsh2	4770156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	61	0	0	NA	exonic	Pfn4	nonsynonymous SNV	"Pfn4:NM_028376:exon1:c.A4G:p.S2G,Pfn4:NM_001361147:exon2:c.A4G:p.S2G"	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.588327736	2	0.9119071	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	134	24	5	0.208333333	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999854	GTT	synonymous	TTA	8	TTATTATT	NA
M2	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	133	28	1	0.035714286	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.91190799	1	0.9992288	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	95	28	0	0	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.659767532	2	0.9130754	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M2	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	63	895	143	0.159776536	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.811051807	1	0.8992501	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	68	1174	103	0.087734242	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.86568224	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	167	34	6	0.176470588	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.575720713	2	0.9999591	CTA	synonymous	NA	NA	NA	NA
M2	chr12	9024291	12A2p6	cell line	sgMsh2	9024291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	98	23	9	0.391304348	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon24:c.T2921C:p.M974T,Wdr35:NM_172470:exon25:c.T2954C:p.M985T"	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.82365883	1	0.9457793	ATG	nonsynonymous	A	5	AAAAA	NA
M2	chr12	9579770	12A2p6	cell line	sgMsh2	9579770	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	90	4	1	0.25	exonic	Osr1	synonymous SNV	Osr1:NM_011859:exon2:c.G642A:p.R214R	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.769028397	1	0.7561423	GGC	synonymous	NA	NA	NA	NA
M2	chr12	11458657	12A2p6	cell line	sgMsh2	11458657	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.225	126	0	0	NA	exonic	Rad51ap2	frameshift insertion	Rad51ap2:NM_001111118:exon1:c.2580dupT:p.L862Ffs*3	12qA1.1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.945526718	NA	NA	CCT	frameshift	T	5	TTTTT	1
M2	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	253	86	15	0.174418605	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.802647125	1	0.9473343	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	163	322	3	0.00931677	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.554709008	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	2	0.9567848	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	304	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.882491604	1	0.9999862	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	219	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.890896285	1	0.9998946	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	33437132	12A2p6	cell line	sgMsh2	33437132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	230	104	24	0.230769231	exonic	Twistnb	nonsynonymous SNV	Twistnb:NM_172253:exon3:c.T593C:p.L198P	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.878289263	1	0.9998098	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	34433149	12A2p6	cell line	sgMsh2	34433149	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	143	0	0	NA	exonic	Hdac9	nonsynonymous SNV	"Hdac9:NM_024124:exon4:c.A338C:p.Q113P,Hdac9:NM_001271386:exon6:c.A410C:p.Q137P"	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.718600306	2	0.8338803	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	163	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	1	0.6046671	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	162	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	2	0.9681534	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr12	44283085	12A2p6	cell line	sgMsh2	44283085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	165	256	36	0.140625	exonic	Pnpla8	nonsynonymous SNV	Pnpla8:NM_026164:exon2:c.A419G:p.K140R	12qB2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.743814352	2	0.677761	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	145	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.882491604	1	0.9980541	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	46700672	12A2p6	cell line	sgMsh2	46700672	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	108	0	0	NA	exonic	Nova1	frameshift deletion	"Nova1:NM_001364634:exon4:c.749delA:p.N250Tfs*15,Nova1:NM_001364635:exon4:c.746delA:p.N249Tfs*15,Nova1:NM_001364638:exon5:c.383delA:p.N128Tfs*15,Nova1:NM_021361:exon5:c.821delA:p.N274Tfs*15,Nova1:NM_001364636:exon6:c.455delA:p.N152Tfs*15,Nova1:NM_001364637:exon7:c.455delA:p.N152Tfs*15"	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.878289263	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	191	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.869884581	1	0.9989655	CTG	synonymous	ACCT	8	ACCTACCT	NA
M2	chr12	51353811	12A2p6	cell line	sgMsh2	51353811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	188	57	15	0.263157895	exonic	G2e3	synonymous SNV	"G2e3:NM_001015099:exon4:c.T147C:p.S49S,G2e3:NM_001167963:exon4:c.T147C:p.S49S,G2e3:NM_001167964:exon4:c.T147C:p.S49S"	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.588327736	2	0.9999797	GTG	synonymous	NA	NA	NA	NA
M2	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	36	6	0.166666667	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.920312672	1	0.9965225	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	158	274	50	0.182481752	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999973	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M2	chr12	51920557	12A2p6	cell line	sgMsh2	51920557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	59	120	26	0.216666667	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon18:c.A2535G:p.Q845Q	12qB3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9971718	TTT	synonymous	NA	NA	NA	NA
M2	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	66	70	16	0.228571429	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.941324377	1	0.9937533	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.398	137	246	77	0.31300813	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M2	chr12	55565519	12A2p6	cell line	sgMsh2	55565519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	256	0	0	NA	exonic	Aldoart2	synonymous SNV	Aldoart2:NM_001277340:exon1:c.T228C:p.G76G	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.659767532	2	0.9999045	GTG	synonymous	G	5	GGGGG	NA
M2	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	141	54	8	0.148148148	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.655565191	2	0.9892433	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr12	55770812	12A2p6	cell line	sgMsh2	55770812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	113	53	12	0.226415094	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001112714:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001286263:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001368814:exon10:c.C1058T:p.T353I,Ralgapa1:NM_019994:exon10:c.C1058T:p.T353I"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.769028397	1	0.7272536	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr12	58212746	12A2p6	cell line	sgMsh2	58212746	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	153	0	0	NA	exonic	Sstr1	nonsynonymous SNV	Sstr1:NM_009216:exon2:c.A154C:p.S52R	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.684981578	2	0.9722554	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	76	127	0	0	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr12	64957384	12A2p6	cell line	sgMsh2	64957384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	242	45	4	0.088888889	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.A354G:p.K118K	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.533697303	2	7.86E-09	GTT	synonymous	NA	NA	NA	NA
M2	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	180	34	9	0.264705882	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.886693944	1	0.9994907	AAG	synonymous	NA	NA	NA	NA
M2	chr12	64967163	12A2p6	cell line	sgMsh2	64967163	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	250	70	11	0.157142857	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.G1187T:p.S396I,Togaram1:NM_177805:exon1:c.G1187T:p.S396I"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.9539314	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	220	90	14	0.155555556	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.99595481	1	4.79E-08	CAA	nonsynonymous	T	5	TTTTT	NA
M2	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	117	129	19	0.147286822	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2	chr12	65099271	12A2p6	cell line	sgMsh2	65099271	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.286	100	11	0	0	exonic	Fancm	frameshift insertion	Fancm:NM_178912:exon11:c.1768dupA:p.N592Kfs*3	12qC1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	2	1	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
M2	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	102	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.794242443	1	0.8707807	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	163	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999981	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	222	70	11	0.157142857	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	103	879	182	0.20705347	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.6051371	2	0.9896994	GGC	synonymous	NA	NA	NA	NA
M2	chr12	69738016	12A2p6	cell line	sgMsh2	69738016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	156	39	5	0.128205128	exonic	Dmac2l	nonsynonymous SNV	"Dmac2l:NM_001361691:exon2:c.G62A:p.C21Y,Dmac2l:NM_026536:exon2:c.G62A:p.C21Y,Dmac2l:NM_001361690:exon3:c.G62A:p.C21Y"	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.756421374	1	0.5111959	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.151	70	83	7	0.084337349	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.634553486	2	0.8660228	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr12	70163398	12A2p6	cell line	sgMsh2	70163398	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	87	0	0	NA	exonic	Abhd12b	frameshift deletion	Abhd12b:NM_001195033:exon4:c.347delG:p.G117Efs*30	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2	chr12	70883726	12A2p6	cell line	sgMsh2	70883726	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	120	42	10	0.238095238	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon7:c.C619A:p.Q207K	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.621946463	2	0.9928441	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	170	796	130	0.163316583	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.983347787	1	0.999997	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	145	654	157	0.240061162	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.743814352	2	0.6093622	GTA	synonymous	NA	NA	NA	NA
M2	chr12	71189409	12A2p6	cell line	sgMsh2	71189409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	218	23	4	0.173913043	exonic	2700049A03Rik	nonsynonymous SNV	"2700049A03Rik:NM_001163378:exon24:c.T3533C:p.V1178A,2700049A03Rik:NM_029818:exon24:c.T3533C:p.V1178A"	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	4.12E-08	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr12	71194390	12A2p6	cell line	sgMsh2	71194390	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	89	4	1	0.25	exonic	2700049A03Rik	synonymous SNV	"2700049A03Rik:NM_001163378:exon27:c.G4071A:p.P1357P,2700049A03Rik:NM_029818:exon27:c.G4071A:p.P1357P"	12qC2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.949729059	1	0.9984755	CGC	synonymous	NA	NA	NA	NA
M2	chr12	72483038	12A2p6	cell line	sgMsh2	72483038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	93	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon21:c.A2779G:p.T927A,Lrrc9:NM_030070:exon21:c.A2782G:p.T928A"	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.69338626	2	0.7732293	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr12	72483066	12A2p6	cell line	sgMsh2	72483066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	80	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon21:c.T2807C:p.I936T,Lrrc9:NM_030070:exon21:c.T2810C:p.I937T"	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.634553486	2	0.9152121	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	221	52	9	0.173076923	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.634553486	2	0.9999328	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M2	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	124	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.815254148	1	0.943432	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr12	75462326	12A2p6	cell line	sgMsh2	75462326	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	205	189	45	0.238095238	exonic	Ppp2r5e	nonsynonymous SNV	Ppp2r5e:NM_012024:exon12:c.G1178T:p.R393M	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.718600306	2	0.9551937	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	181	23	6	0.260869565	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.844670535	1	0.9938554	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	213	38	9	0.236842105	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.869884581	1	0.9994282	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	148	69	5	0.072463768	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.874086922	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr12	76031322	12A2p6	cell line	sgMsh2	76031322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	80	65	10	0.153846154	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon75:c.T14027C:p.V4676A	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9993513	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	98	87	18	0.206896552	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.785837761	1	0.8357284	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	142	145	28	0.193103448	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.638755827	2	0.9953173	CTC	nonsynonymous	C	5	CCCCC	NA
M2	chr12	79172261	12A2p6	cell line	sgMsh2	79172261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	18	151	23	0.152317881	exonic	Vti1b	nonsynonymous SNV	Vti1b:NM_016800:exon1:c.T74C:p.L25S	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.932919695	1	0.9298113	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	116	20	6	0.3	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.537899644	2	0.9995841	AGA	synonymous	NA	NA	NA	NA
M2	chr12	80404565	12A2p6	cell line	sgMsh2	80404565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	131	117	22	0.188034188	exonic	Dcaf5	synonymous SNV	"Dcaf5:NM_001364324:exon2:c.A102G:p.V34V,Dcaf5:NM_177267:exon2:c.A348G:p.V116V"	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.529494962	2	0.9998876	ATA	synonymous	NA	NA	NA	NA
M2	chr12	80644882	12A2p6	cell line	sgMsh2	80644882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	183	90	28	0.311111111	exonic	Slc39a9	nonsynonymous SNV	Slc39a9:NM_026244:exon1:c.T2C:p.M1T	12qC3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.840468194	1	0.9923664	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	203	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	189	2	0	0	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.672374555	2	0.9962816	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	185	33	5	0.151515152	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.806849466	1	0.9445033	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	114	140	29	0.207142857	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.739612011	2	0.5351031	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	250	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.596732418	2	0.9999993	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr12	83803958	12A2p6	cell line	sgMsh2	83803958	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	111	78	14	0.179487179	exonic	Numb	synonymous SNV	"Numb:NM_001272055:exon5:c.C444T:p.G148G,Numb:NM_001136075:exon6:c.C477T:p.G159G,Numb:NM_010949:exon6:c.C477T:p.G159G,Numb:NM_001272056:exon7:c.C444T:p.G148G"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.584125395	2	0.9970638	AGC	synonymous	NA	NA	NA	NA
M2	chr12	84041861	12A2p6	cell line	sgMsh2	84041861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	88	0	0	NA	exonic	Acot4	nonsynonymous SNV	Acot4:NM_134247:exon2:c.T482A:p.I161N	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.99963	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	151	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.512685598	2	0.999943	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr12	84162393	12A2p6	cell line	sgMsh2	84162393	G	-	Deletion	Strelka2;Vardict	2	0.25	36	11	1	0.090909091	exonic	Mideas	frameshift deletion	"Mideas:NM_001163501:exon4:c.1934delC:p.P645Lfs*57,Mideas:NM_001163502:exon4:c.1934delC:p.P645Lfs*57"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
M2	chr12	84173158	12A2p6	cell line	sgMsh2	84173158	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	102	17	1	0.058823529	exonic	Mideas	nonsynonymous SNV	"Mideas:NM_001163501:exon2:c.T1021G:p.S341A,Mideas:NM_001163502:exon2:c.T1021G:p.S341A"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.508483257	2	0.9985439	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	84926253	12A2p6	cell line	sgMsh2	84926253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	95	73	13	0.178082192	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon13:c.G1769A:p.G590E,Arel1:NM_001364189:exon14:c.G1769A:p.G590E,Arel1:NM_178065:exon14:c.G1769A:p.G590E"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.932919695	1	0.9981203	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr12	84970964	12A2p6	cell line	sgMsh2	84970964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	188	104	24	0.230769231	exonic	Fcf1	nonsynonymous SNV	Fcf1:NM_028632:exon1:c.T2C:p.M1T	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.710195624	2	0.9603919	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	293	79	16	0.202531646	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.983347787	1	2.05E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	49	118	23	0.194915254	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	2	1	1	0.9943084	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	87279759	12A2p6	cell line	sgMsh2	87279759	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.227	82	2	0	0	exonic	Ism2	frameshift insertion	Ism2:NM_001290302:exon6:c.1404dupC:p.N469Qfs*29	12qD2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.9539314	NA	NA	TTG	frameshift	G	5	GGGGG	1
M2	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	81	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.99595481	1	0.9993257	CTT	synonymous	NA	NA	NA	NA
M2	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	90	48	4	0.083333333	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.777433079	1	0.7994895	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	88459023	12A2p6	cell line	sgMsh2	88459023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	85	28	6	0.214285714	exonic	Adck1	nonsynonymous SNV	"Adck1:NM_001361599:exon8:c.G857A:p.R286H,Adck1:NM_001361601:exon8:c.G683A:p.R228H,Adck1:NM_001361598:exon9:c.G1046A:p.R349H,Adck1:NM_001277296:exon10:c.G1220A:p.R407H,Adck1:NM_001277297:exon10:c.G1220A:p.R407H,Adck1:NM_001361600:exon10:c.G842A:p.R281H,Adck1:NM_028105:exon10:c.G1220A:p.R407H"	12qD3	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.970740764	1	0.9989566	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	247	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.82365883	1	0.9899224	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	135	18	6	0.333333333	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999864	ATG	synonymous	NA	NA	NA	NA
M2	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	146	70	20	0.285714286	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.659767532	2	0.9894273	TGA	synonymous	NA	NA	NA	NA
M2	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	43	32	7	0.21875	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.672374555	1	0.5145015	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	88	34	0	0	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.73540967	1	7.67E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	49	1	1	1	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.701790942	1	0.5757482	AAC	synonymous	NA	NA	NA	NA
M2	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	78	13	5	0.384615385	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.760623715	1	9.03E-09	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.158	268	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.663969873	NA	NA	CCA	frameshift	NA	NA	NA	1
M2	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	100	3	1	0.333333333	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.903503308	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M2	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	91	132	27	0.204545455	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.979145446	1	0.9994369	TTC	synonymous	NA	NA	NA	NA
M2	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	81	15	0.185185185	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.840468194	1	0.9250348	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr12	102808016	12A2p6	cell line	sgMsh2	102808016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	63	143	36	0.251748252	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon6:c.G1492T:p.G498C,Btbd7:NM_172806:exon7:c.G1492T:p.G498C"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.882491604	1	0.9755201	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.228	185	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.958133741	1	0.9999947	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	153	161	35	0.217391304	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	1	1	0.9999961	GAG	synonymous	NA	NA	NA	NA
M2	chr12	103558388	12A2p6	cell line	sgMsh2	103558388	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	144	0	0	NA	exonic	Ppp4r4	nonsynonymous SNV	Ppp4r4:NM_028980:exon3:c.G218A:p.G73E	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.617744122	2	0.9984451	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr12	103669079	12A2p6	cell line	sgMsh2	103669079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	59	0	0	NA	exonic	Serpina16	stopgain	Serpina16:NM_001310472:exon6:c.G1075T:p.E359X	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.588327736	2	0.09887443	TCA	nonsynonymous	CTCA	9	CTCACTCAC	NA
M2	chr12	104032507	12A2p6	cell line	sgMsh2	104032507	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	78	0	0	NA	exonic	Serpina12	nonsynonymous SNV	Serpina12:NM_026535:exon4:c.C971A:p.S324Y	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.86568224	1	0.9762612	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr12	104130914	12A2p6	cell line	sgMsh2	104130914	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.153	265	0	0	NA	exonic	Serpina3b	frameshift insertion	Serpina3b:NM_173024:exon2:c.454dupA:p.E153Gfs*9	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.642958168	NA	NA	TCA	frameshift	NA	NA	NA	1
M2	chr12	104266521	12A2p6	cell line	sgMsh2	104266521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	278	0	0	NA	exonic	Serpina3i	nonsynonymous SNV	Serpina3i:NM_001199940:exon4:c.G684T:p.K228N	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.899300967	1	0.9999935	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.213	96	90	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.895098626	NA	NA	TGT	frameshift	T	5	TTTTT	1
M2	chr12	105713544	12A2p6	cell line	sgMsh2	105713544	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	127	0	0	NA	exonic	Ak7	synonymous SNV	Ak7:NM_030187:exon3:c.C336T:p.C112C	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.663969873	2	0.971986	GCG	synonymous	NA	NA	NA	NA
M2	chr12	105716017	12A2p6	cell line	sgMsh2	105716017	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.174	163	0	0	NA	exonic	Ak7	stopgain	Ak7:NM_030187:exon4:c.C436T:p.R146X	12qE	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.731207329	2	0.8016682	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	127	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.815254148	1	0.9448254	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	108898388	12A2p6	cell line	sgMsh2	108898388	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	54	7	4	0.571428571	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.G458A:p.S153N	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.647160509	2	0.6941329	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	109033003	12A2p6	cell line	sgMsh2	109033003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	19	0	0	NA	exonic	Begain	nonsynonymous SNV	"Begain:NM_001163175:exon7:c.A1841G:p.Y614C,Begain:NM_001374201:exon7:c.A1835G:p.Y612C,Begain:NM_001374202:exon7:c.A1823G:p.Y608C,Begain:NM_001374203:exon7:c.A1784G:p.Y595C,Begain:NM_001374200:exon8:c.A1931G:p.Y644C"	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	2	1	1	0.9550432	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr12	110629611	12A2p6	cell line	sgMsh2	110629611	A	G	SNV	Mutect2;Vardict	2	0.032	175	270	6	0.022222222	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon22:c.A4571G:p.K1524R	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.134474911	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.122	40	17	6	0.352941176	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.512685598	2	0.8558255	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr12	111261630	12A2p6	cell line	sgMsh2	111261630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	119	28	6	0.214285714	exonic	Traf3	nonsynonymous SNV	"Traf3:NM_001286122:exon10:c.A1199C:p.K400T,Traf3:NM_001364364:exon11:c.A1199C:p.K400T,Traf3:NM_011632:exon12:c.A1274C:p.K425T"	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.710195624	2	0.799962	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	111302157	12A2p6	cell line	sgMsh2	111302157	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.136	109	131	3	0.022900763	exonic	Cdc42bpb	frameshift deletion	Cdc42bpb:NM_183016:exon28:c.3608delA:p.K1203Rfs*4	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.571518372	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr12	111411810	12A2p6	cell line	sgMsh2	111411810	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	84	0	0	NA	exonic	Lbhd2	nonsynonymous SNV	"Lbhd2:NM_001101503:exon4:c.G310A:p.V104I,Lbhd2:NM_001358956:exon4:c.G310A:p.V104I"	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.827861171	1	0.9434223	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr12	111485500	12A2p6	cell line	sgMsh2	111485500	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	27	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A271C:p.S91R	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.785837761	1	0.8449109	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	93	18	1	0.055555556	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.600934759	2	0.9834444	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	48	11	0.229166667	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.874086922	1	0.9823575	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	67	59	16	0.271186441	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.668172214	2	8.23E-06	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	112920454	12A2p6	cell line	sgMsh2	112920454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	71	51	10	0.196078431	exonic	Jag2	synonymous SNV	Jag2:NM_010588:exon4:c.C504T:p.H168H	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.987550128	1	0.9983644	CGT	synonymous	NA	NA	NA	NA
M2	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	274	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.857277558	1	0.9996519	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.878289263	1	0.9977555	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	165	241	49	0.203319502	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.987550128	1	0.9999967	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	119	246	7	0.028455285	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.811051807	1	0.9311063	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M2	chr12	117253656	12A2p6	cell line	sgMsh2	117253656	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	127	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon20:c.G2795T:p.S932I	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.537899644	2	0.9998301	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	96	23	1	0.043478261	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.848872876	1	0.9744298	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	182	18	0	0	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.773230738	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	113	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.857277558	1	0.986558	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr12	118023849	12A2p6	cell line	sgMsh2	118023849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	78	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon45:c.G7317T:p.K2439N	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.899300967	1	0.9899328	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr12	118142812	12A2p6	cell line	sgMsh2	118142812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	191	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon10:c.T1774C:p.Y592H	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.705993283	2	0.9716259	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	123	4	0	0	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.764826056	1	0.6777141	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	187	4	0	0	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.756421374	2	0.5716372	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr12	119447131	12A2p6	cell line	sgMsh2	119447131	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	219	2	0	0	exonic	Macc1	frameshift deletion	Macc1:NM_001163136:exon2:c.1633delA:p.K546Nfs*1	12qF2	chr12-3501831-119465464	5	4	1	0.99	4.160317559	NA	1	0.937122036	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	148	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999945	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr13	19367757	12A2p6	cell line	sgMsh2	19367757	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.193	68	175	50	0.285714286	exonic	Stard3nl	synonymous SNV	"Stard3nl:NM_001347485:exon7:c.T636C:p.P212P,Stard3nl:NM_024270:exon7:c.T636C:p.P212P"	13qA2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.811051807	1	0.09744307	CAG	synonymous	NA	NA	NA	NA
M2	chr13	21639372	12A2p6	cell line	sgMsh2	21639372	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	115	0	0	NA	exonic	Olfr11	nonsynonymous SNV	Olfr11:NM_146542:exon1:c.T150A:p.H50Q	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999444	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr13	21674653	12A2p6	cell line	sgMsh2	21674653	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	180	0	0	NA	exonic	Olfr1360	nonsynonymous SNV	Olfr1360:NM_146543:exon1:c.G290A:p.C97Y	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.731207329	2	0.8483914	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	366	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.844670535	1	0.9998014	GGC	synonymous	NA	NA	NA	NA
M2	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	255	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	3.99E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr13	22620498	12A2p6	cell line	sgMsh2	22620498	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.05	365	0	0	NA	exonic	Vmn1r206	nonsynonymous SNV	Vmn1r206:NM_134216:exon1:c.C538A:p.L180I	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.210117048	3	1	AGA	nonsynonymous	A	5	AAAAA	NA
M2	chr13	22806259	12A2p6	cell line	sgMsh2	22806259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	256	0	0	NA	exonic	Vmn1r209	nonsynonymous SNV	Vmn1r209:NM_001013787:exon1:c.G260A:p.G87E	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	3.79E-09	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr13	22852362	12A2p6	cell line	sgMsh2	22852362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	298	0	0	NA	exonic	Vmn1r211	nonsynonymous SNV	Vmn1r211:NM_134243:exon1:c.T134A:p.L45H	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.983347787	1	1.76E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	294	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	1.19E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	108	507	128	0.252465483	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.857277558	1	0.9849611	GCA	synonymous	NA	NA	NA	NA
M2	chr13	24899697	12A2p6	cell line	sgMsh2	24899697	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	77	1	1	1	exonic	D130043K22Rik	synonymous SNV	D130043K22Rik:NM_001081051:exon21:c.G3144A:p.T1048T	13qA3.1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.9539314	1	0.997401	CGC	synonymous	NA	NA	NA	NA
M2	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	26	71	10	0.14084507	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9720207	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	76	118	47	0.398305085	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9991411	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	117	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999517	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	165	54	8	0.148148148	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.722802647	2	0.8694422	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr13	45557413	12A2p6	cell line	sgMsh2	45557413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	19	6	0.315789474	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon7:c.A2018G:p.K673R,Atxn1:NM_001199305:exon8:c.A2042G:p.K681R,Atxn1:NM_009124:exon8:c.A2018G:p.K673R"	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.999789	CTT	nonsynonymous	T	5	TTTTT	NA
M2	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	133	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999843	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr13	48881094	12A2p6	cell line	sgMsh2	48881094	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	54	389	73	0.187660668	exonic	Fam120a	nonsynonymous SNV	Fam120a:NM_001033268:exon18:c.G3041A:p.G1014D	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9959869	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	71	1	0	0	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9987803	GTA	synonymous	NA	NA	NA	NA
M2	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	181	18	3	0.166666667	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9982569	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.916110331	1	0.9970663	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	60	20	5	0.25	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.997363	AAG	synonymous	NA	NA	NA	NA
M2	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	68	4	1	0.25	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9473968	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M2	chr13	53468485	12A2p6	cell line	sgMsh2	53468485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	0	0	NA	exonic	Msx2	nonsynonymous SNV	Msx2:NM_013601:exon2:c.A488C:p.Q163P	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9996551	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr13	54104821	12A2p6	cell line	sgMsh2	54104821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	118	244	76	0.31147541	exonic	Sfxn1	nonsynonymous SNV	Sfxn1:NM_027324:exon9:c.C794T:p.A265V	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.999955	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	87	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.663969873	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	137	50	9	0.18	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.508483257	2	0.9998243	AAC	synonymous	NA	NA	NA	NA
M2	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	120	41	13	0.317073171	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.958133741	1	0.9997922	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr13	56635612	12A2p6	cell line	sgMsh2	56635612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	123	8	4	0.5	exonic	Tgfbi	synonymous SNV	Tgfbi:NM_009369:exon13:c.T1725C:p.D575D	13qB1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9997061	ATG	synonymous	NA	NA	NA	NA
M2	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	244	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9999838	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr13	63015288	12A2p6	cell line	sgMsh2	63015288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	262	0	0	NA	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon2:c.G122T:p.G41V,Aopep:NM_001289926:exon2:c.G122T:p.G41V"	13qB3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	2.83E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	77	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.991752469	1	0.9990113	CTA	synonymous	NA	NA	NA	NA
M2	chr13	64921401	12A2p6	cell line	sgMsh2	64921401	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	188	0	0	NA	exonic	Spata31	synonymous SNV	Spata31:NM_030047:exon3:c.C1362T:p.T454T	13qB3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9958428	CCC	synonymous	NA	NA	NA	NA
M2	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	152	45	6	0.133333333	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.718600306	NA	NA	TAG	frameshift	NA	NA	NA	-1
M2	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9989399	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	36	2	0	0	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9859386	GAG	synonymous	NA	NA	NA	NA
M2	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	173	126	55	0.436507937	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr13	76008176	12A2p6	cell line	sgMsh2	76008176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	167	79	20	0.253164557	exonic	Rfesd	nonsynonymous SNV	"Rfesd:NM_001131068:exon2:c.A110G:p.H37R,Rfesd:NM_001131069:exon2:c.A110G:p.H37R,Rfesd:NM_178916:exon2:c.A110G:p.H37R"	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999986	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr13	77044013	12A2p6	cell line	sgMsh2	77044013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	107	17	3	0.176470588	exonic	Slf1	stopgain	Slf1:NM_134071:exon21:c.C2701T:p.Q901X	13qC1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999025	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	96	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.999789	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	91	4	0	0	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9997003	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	212	23	5	0.217391304	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.7157521	CTT	synonymous	NA	NA	NA	NA
M2	chr13	93092756	12A2p6	cell line	sgMsh2	93092756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	170	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.T5823C:p.G1941G	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999988	GAC	synonymous	NA	NA	NA	NA
M2	chr13	93184115	12A2p6	cell line	sgMsh2	93184115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	161	82	17	0.207317073	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon4:c.A429G:p.E143E,Tent2:NM_001361537:exon4:c.A429G:p.E143E,Tent2:NM_133905:exon4:c.A429G:p.E143E"	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.890896285	1	0.9992453	GTT	synonymous	NA	NA	NA	NA
M2	chr13	93184292	12A2p6	cell line	sgMsh2	93184292	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.414	136	253	40	0.158102767	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon4:c.252delT:p.P85Lfs*17,Tent2:NM_001361537:exon4:c.252delT:p.P85Lfs*17,Tent2:NM_133905:exon4:c.252delT:p.P85Lfs*17"	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	55	48	7	0.145833333	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.621946463	2	0.7903082	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr13	97175727	12A2p6	cell line	sgMsh2	97175727	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	151	83	2	0.024096386	exonic	Gfm2	nonsynonymous SNV	"Gfm2:NM_001271464:exon20:c.A2249G:p.H750R,Gfm2:NM_001271463:exon21:c.A2330G:p.H777R,Gfm2:NM_001271465:exon21:c.A2324G:p.H775R,Gfm2:NM_177266:exon21:c.A2330G:p.H777R"	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.142879593	3	1.06E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	123	127	17	0.133858268	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999683	ATT	synonymous	NA	NA	NA	NA
M2	chr13	98852932	12A2p6	cell line	sgMsh2	98852932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	126	197	43	0.218274112	exonic	Tnpo1	nonsynonymous SNV	"Tnpo1:NM_001048267:exon19:c.A2237G:p.Y746C,Tnpo1:NM_178716:exon19:c.A2261G:p.Y754C"	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.844670535	1	0.9831076	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr13	98860720	12A2p6	cell line	sgMsh2	98860720	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	208	255	57	0.223529412	exonic	Tnpo1	synonymous SNV	"Tnpo1:NM_001048267:exon12:c.A1200C:p.P400P,Tnpo1:NM_178716:exon12:c.A1224C:p.P408P"	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.819456489	1	0.9790479	GTG	synonymous	NA	NA	NA	NA
M2	chr13	99993608	12A2p6	cell line	sgMsh2	99993608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	67	50	0	0	exonic	Mccc2	synonymous SNV	Mccc2:NM_030026:exon3:c.A240G:p.K80K	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9983854	GTT	synonymous	NA	NA	NA	NA
M2	chr13	100298953	12A2p6	cell line	sgMsh2	100298953	T	C	SNV	Mutect2;Vardict	2	0.01	814	2	0	0	exonic	Naip6;Naip7	nonsynonymous SNV	"Naip6:NM_010871:exon9:c.A3061G:p.M1021V,Naip7:NM_021545:exon10:c.A3061G:p.M1021V"	13qD1	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.04202341	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	90	80	32	0.4	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9996785	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr13	112355957	12A2p6	cell line	sgMsh2	112355957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	94	1	0	0	exonic	Ankrd55	nonsynonymous SNV	"Ankrd55:NM_029898:exon7:c.T661C:p.S221P,Ankrd55:NM_001168403:exon8:c.T577C:p.S193P,Ankrd55:NM_001168404:exon8:c.T661C:p.S221P"	13qD2.2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	1	1	0.9997572	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr13	113210128	12A2p6	cell line	sgMsh2	113210128	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	100	0	0	NA	exonic	Esm1	nonsynonymous SNV	Esm1:NM_023612:exon1:c.T286A:p.F96I	13qD2.2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.697588601	2	0.7873271	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr13	114826231	12A2p6	cell line	sgMsh2	114826231	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	112	22	0.196428571	exonic	Mocs2	nonsynonymous SNV	"Mocs2:NM_001113374:exon5:c.G451A:p.V151M,Mocs2:NM_001113375:exon5:c.G355A:p.V119M"	13qD2.2	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999819	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	157	10	0	0	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.798444784	1	0.09732146	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	127	7	0	0	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.579923054	2	0.9991703	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr13	117603071	12A2p6	cell line	sgMsh2	117603071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	30	0	0	NA	exonic	Hcn1	nonsynonymous SNV	Hcn1:NM_010408:exon1:c.T368C:p.I123T	13qD2.3	chr13-3556297-119495179	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9417278	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	150	1444	454	0.314404432	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999952	CCT	synonymous	NA	NA	NA	NA
M2	chr14	7945865	12A2p6	cell line	sgMsh2	7945865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	63	836	206	0.246411483	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon44:c.A7269G:p.G2423G,Flnb:NM_134080:exon44:c.A7236G:p.G2412G"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.65136285	2	0.7604963	GAC	synonymous	NA	NA	NA	NA
M2	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	36	1	0	0	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	CAG	synonymous	NA	NA	NA	NA
M2	chr14	12037397	12A2p6	cell line	sgMsh2	12037397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	153	39	1	0.025641026	exonic	Ptprg	synonymous SNV	Ptprg:NM_008981:exon5:c.T576C:p.S192S	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999961	CTG	synonymous	NA	NA	NA	NA
M2	chr14	12344519	12A2p6	cell line	sgMsh2	12344519	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.429	28	0	0	NA	exonic	Fezf2	frameshift deletion	Fezf2:NM_080433:exon2:c.667delC:p.H223Tfs*18	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TGG	frameshift	TGGG	8	TGGGTGGG	-1
M2	chr14	12505891	12A2p6	cell line	sgMsh2	12505891	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	80	0	0	NA	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon13:c.C2178A:p.L726L,Cadps:NM_001359921:exon13:c.C2178A:p.L726L,Cadps:NM_012061:exon13:c.C2178A:p.L726L,Cadps:NM_001042617:exon14:c.C2190A:p.L730L,Cadps:NM_001359919:exon14:c.C2190A:p.L730L"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	AGA	synonymous	NA	NA	NA	NA
M2	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	58	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.989031	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	75	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.987548	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	61	75	15	0.2	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9975414	TTA	synonymous	NA	NA	NA	NA
M2	chr14	16429398	12A2p6	cell line	sgMsh2	16429398	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	71	285	65	0.228070175	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon35:c.A4637G:p.N1546S	14qA2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.722802647	1	0.5412174	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	111	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999264	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	20077446	12A2p6	cell line	sgMsh2	20077446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	81	47	12	0.255319149	exonic	Saysd1	nonsynonymous SNV	Saysd1:NM_026209:exon2:c.G409A:p.E137K	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr14	20467483	12A2p6	cell line	sgMsh2	20467483	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	90	4	0	0	exonic	Anxa7	frameshift deletion	Anxa7:NM_001374757:exon6:c.467delC:p.P156Lfs*12	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.903503308	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	107	10	2	0.2	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.78163542	1	0.8128357	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	21045582	12A2p6	cell line	sgMsh2	21045582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	170	74	12	0.162162162	exonic	Ap3m1	nonsynonymous SNV	Ap3m1:NM_018829:exon2:c.A179G:p.Y60C	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.999997	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	52	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.886693944	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	45	22	4	0.181818182	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	24479845	12A2p6	cell line	sgMsh2	24479845	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	132	58	15	0.25862069	exonic	Polr3a	synonymous SNV	Polr3a:NM_001081247:exon6:c.T676C:p.L226L	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9996803	AAG	synonymous	NA	NA	NA	NA
M2	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	155	234	78	0.333333333	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999967	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr14	27493488	12A2p6	cell line	sgMsh2	27493488	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	30	7	0.233333333	exonic	Ccdc66	nonsynonymous SNV	Ccdc66:NM_177111:exon9:c.A1094C:p.D365A	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr14	27912962	12A2p6	cell line	sgMsh2	27912962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	109	9	1	0.111111111	exonic	Erc2	synonymous SNV	"Erc2:NM_177814:exon6:c.T1455C:p.A485A,Erc2:NM_001347497:exon7:c.T1479C:p.A493A"	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9986961	CTG	synonymous	NA	NA	NA	NA
M2	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	93	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9981832	GAA	nonsynonymous	A	5	AAAAA	NA
M2	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	101	70	12	0.171428571	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9990757	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	46	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.9539314	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	81	972	215	0.221193416	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.680779237	2	0.7659562	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	30892280	12A2p6	cell line	sgMsh2	30892280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	167	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon10:c.A1186G:p.T396A,Itih4:NM_001289632:exon10:c.A1186G:p.T396A,Itih4:NM_001289633:exon10:c.A1186G:p.T396A,Itih4:NM_018746:exon10:c.A1186G:p.T396A"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9999527	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	59	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	56	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9965109	CAA	synonymous	NA	NA	NA	NA
M2	chr14	30935287	12A2p6	cell line	sgMsh2	30935287	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon12:c.T1590G:p.A530A,Itih1:NM_008406:exon12:c.T1578G:p.A526A"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	GAG	synonymous	NA	NA	NA	NA
M2	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	163	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr14	31014621	12A2p6	cell line	sgMsh2	31014621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	149	294	86	0.292517007	exonic	Gnl3	nonsynonymous SNV	Gnl3:NM_153547:exon9:c.T823A:p.C275S	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999949	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	80	1	0	0	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993513	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	68	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9984947	AGC	synonymous	NA	NA	NA	NA
M2	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	61	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	CAG	synonymous	NA	NA	NA	NA
M2	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	67	13	0	0	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	0.5535527	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	45	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9797405	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr14	32937781	12A2p6	cell line	sgMsh2	32937781	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	45	0	0	NA	exonic	Vstm4	synonymous SNV	Vstm4:NM_178791:exon8:c.G879A:p.L293L	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9281414	TGA	synonymous	GAGCTG	12	GAGCTGGAGCTG	NA
M2	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.375	32	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M2	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	56	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.8787444	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	71	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9987803	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	62	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.996164	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	45383448	12A2p6	cell line	sgMsh2	45383448	T	A	SNV	Mutect2;Strelka2	2	0.233	58	136	10	0.073529412	exonic	Gnpnat1	stopgain	Gnpnat1:NM_019425:exon3:c.A163T:p.K55X	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.995472	TTA	nonsynonymous	A	5	AAAAA	NA
M2	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.153	122	31	2	0.064516129	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.642958168	2	0.9851	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	132	36	6	0.166666667	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.73540967	2	0.6500316	GAC	synonymous	NA	NA	NA	NA
M2	chr14	46385906	12A2p6	cell line	sgMsh2	46385906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	38	9	3	0.333333333	exonic	Bmp4	nonsynonymous SNV	"Bmp4:NM_001316360:exon2:c.T182C:p.L61P,Bmp4:NM_007554:exon3:c.T182C:p.L61P"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9864325	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	54	35	7	0.2	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.613541781	2	0.8055688	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	23	8	0.347826087	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.636	43	17	6	0.352941176	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M2	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	223	34	12	0.352941176	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	2.93E-08	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr14	49304191	12A2p6	cell line	sgMsh2	49304191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	65	0	0	NA	exonic	Slc35f4	nonsynonymous SNV	Slc35f4:NM_029238:exon6:c.G1105A:p.G369R	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9981424	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr14	49773527	12A2p6	cell line	sgMsh2	49773527	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	129	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon2:c.C722T:p.A241V,Armh4:NM_026142:exon2:c.C722T:p.A241V"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999792	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr14	49774030	12A2p6	cell line	sgMsh2	49774030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	139	0	0	NA	exonic	Armh4	synonymous SNV	"Armh4:NM_001358244:exon2:c.C219T:p.D73D,Armh4:NM_026142:exon2:c.C219T:p.D73D"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999897	GGT	synonymous	NA	NA	NA	NA
M2	chr14	50083882	12A2p6	cell line	sgMsh2	50083882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	249	0	0	NA	exonic	Olfr726	synonymous SNV	Olfr726:NM_146316:exon1:c.A798G:p.S266S	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.999981	CTG	synonymous	NA	NA	NA	NA
M2	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	89	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	TAA	synonymous	NA	NA	NA	NA
M2	chr14	50362479	12A2p6	cell line	sgMsh2	50362479	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	93	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.C1921T:p.L641F	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.794242443	1	0.8689257	GCT	nonsynonymous	CTG	8	CTGCTGCT	NA
M2	chr14	50393556	12A2p6	cell line	sgMsh2	50393556	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Olfr736	stopgain	Olfr736:NM_146666:exon1:c.G799T:p.G267X	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.977789	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	229	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	1.95E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	195	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.777433079	1	0.7286003	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	63	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.558911349	2	0.9554016	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	75	1	0	0	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	CGT	synonymous	NA	NA	NA	NA
M2	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	31	1	0	0	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9801412	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	34	119	19	0.159663866	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.52109028	2	0.7678338	TAG	synonymous	NA	NA	NA	NA
M2	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	67	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.596732418	2	0.9277403	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	52145038	12A2p6	cell line	sgMsh2	52145038	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	44	1	1	1	exonic	Rpgrip1	nonsynonymous SNV	Rpgrip1:NM_023879:exon15:c.C1660G:p.L554V	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	52149571	12A2p6	cell line	sgMsh2	52149571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	43	1	0	0	exonic	Rpgrip1	synonymous SNV	"Rpgrip1:NM_001168515:exon18:c.T2346C:p.D782D,Rpgrip1:NM_023879:exon18:c.T2958C:p.D986D"	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9913518	ATG	synonymous	AGG	95	GAGGAGAAGGAGGAGGAGAAGGAGGAAGAGGAGGAGGAGGACGAGAAGGAAGAGGAGGAAGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAGGA	NA
M2	chr14	52158388	12A2p6	cell line	sgMsh2	52158388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	163	2	2	1	exonic	Rpgrip1	nonsynonymous SNV	"Rpgrip1:NM_001168515:exon23:c.T3074C:p.V1025A,Rpgrip1:NM_023879:exon23:c.T3686C:p.V1229A"	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.676576896	2	0.9873457	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	52173812	12A2p6	cell line	sgMsh2	52173812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	123	194	53	0.273195876	exonic	Supt16	nonsynonymous SNV	Supt16:NM_033618:exon17:c.A2021G:p.K674R	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8549892	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	132	297	51	0.171717172	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999832	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M2	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.373	60	100	6	0.06	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr14	52235367	12A2p6	cell line	sgMsh2	52235367	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	62	56	16	0.285714286	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon3:c.A978C:p.Q326H	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	52372591	12A2p6	cell line	sgMsh2	52372591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.253	179	0	0	NA	exonic	Olfr1512	nonsynonymous SNV	Olfr1512:NM_146432:exon1:c.C461T:p.S154L	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	TGA	nonsynonymous	AGCC	9	AGCCAGCCA	NA
M2	chr14	52410268	12A2p6	cell line	sgMsh2	52410268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	180	0	0	NA	exonic	Olfr1510	synonymous SNV	Olfr1510:NM_146431:exon1:c.A603G:p.E201E	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	0.727004988	2	0.8779867	GTT	synonymous	NA	NA	NA	NA
M2	chr14	52490154	12A2p6	cell line	sgMsh2	52490154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	149	0	0	NA	exonic	Olfr1507	nonsynonymous SNV	"Olfr1507:NM_020512:exon1:c.A809G:p.E270G,Olfr1507:NM_001170918:exon2:c.A809G:p.E270G"	14qC2	chr14-7422346-52811780	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999949	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr14	54437728	12A2p6	cell line	sgMsh2	54437728	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	91	293	17	0.058020478	exonic	Mmp14	synonymous SNV	Mmp14:NM_008608:exon5:c.T816C:p.P272P	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.298366209	3	0.9942029	CTG	synonymous	NA	NA	NA	NA
M2	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	77	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	71	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	54858102	12A2p6	cell line	sgMsh2	54858102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	71	6	2	0.333333333	exonic	Homez	nonsynonymous SNV	"Homez:NM_001177705:exon2:c.T148C:p.F50L,Homez:NM_183174:exon2:c.T148C:p.F50L"	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.189	15	6	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.794242443	1	0.8508181	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	61	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9975414	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	54953903	12A2p6	cell line	sgMsh2	54953903	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	106	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon21:c.A2480G:p.K827R,Myh6:NM_010856:exon21:c.A2480G:p.K827R"	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9973043	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	55101599	12A2p6	cell line	sgMsh2	55101599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	75	40	0	0	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon14:c.A857G:p.Q286R,Ap1g2:NM_007455:exon15:c.A1499G:p.Q500R"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	66	26	5	0.192307692	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9960514	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	107	222	37	0.166666667	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9959481	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	55621286	12A2p6	cell line	sgMsh2	55621286	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	75	0	0	NA	exonic	Rec8	nonsynonymous SNV	"Rec8:NM_001360389:exon6:c.C190T:p.L64F,Rec8:NM_020002:exon7:c.C517T:p.L173F"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	55633044	12A2p6	cell line	sgMsh2	55633044	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	56	83	24	0.289156627	exonic	Ipo4	synonymous SNV	"Ipo4:NM_001360078:exon10:c.C922T:p.L308L,Ipo4:NM_024267:exon10:c.C922T:p.L308L"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9888383	AGT	synonymous	NA	NA	NA	NA
M2	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	39	71	16	0.225352113	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9842643	AAC	synonymous	NA	NA	NA	NA
M2	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.143	39	35	9	0.257142857	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.600934759	2	0.6694939	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	46	11	4	0.363636364	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.992983	CTT	synonymous	NA	NA	NA	NA
M2	chr14	55762728	12A2p6	cell line	sgMsh2	55762728	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	22	0	0	NA	exonic	Ltb4r2	nonsynonymous SNV	Ltb4r2:NM_020490:exon2:c.G805A:p.A269T	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.963277	GGC	nonsynonymous	GC	8	GCGCGCGC	NA
M2	chr14	56019555	12A2p6	cell line	sgMsh2	56019555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	96	14	9	0.642857143	exonic	Mcpt1	synonymous SNV	Mcpt1:NM_008570:exon4:c.C549T:p.N183N	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	ACT	synonymous	NA	NA	NA	NA
M2	chr14	56100557	12A2p6	cell line	sgMsh2	56100557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	75	0	0	NA	exonic	Ctsg	nonsynonymous SNV	Ctsg:NM_007800:exon4:c.A580G:p.K194E	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.974417	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	123	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.714397965	2	0.7889658	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr14	56500485	12A2p6	cell line	sgMsh2	56500485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	68	0	0	NA	exonic	Rnf17	nonsynonymous SNV	Rnf17:NM_001033043:exon27:c.T3722G:p.L1241R	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.558911349	2	0.9691552	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	115	33	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr14	56778140	12A2p6	cell line	sgMsh2	56778140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	51	26	8	0.307692308	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon1:c.T20C:p.L7P	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9950504	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	57450706	12A2p6	cell line	sgMsh2	57450706	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	242	37	0	0	exonic	Ift88	frameshift deletion	Ift88:NM_009376:exon13:c.1080delA:p.N362Mfs*19	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.949729059	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	127	8	5	0.625	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	139	169	2	0.01183432	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.962336082	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	185	29	5	0.172413793	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999996	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M2	chr14	62606644	12A2p6	cell line	sgMsh2	62606644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	53	0	0	NA	exonic	Fam124a	nonsynonymous SNV	Fam124a:NM_001243857:exon4:c.T1600C:p.F534L	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	63492797	12A2p6	cell line	sgMsh2	63492797	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	62	0	0	NA	exonic	Tdh	nonsynonymous SNV	Tdh:NM_021480:exon9:c.G1032T:p.W344C	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr14	65578034	12A2p6	cell line	sgMsh2	65578034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	106	154	32	0.207792208	exonic	Elp3	nonsynonymous SNV	"Elp3:NM_001253812:exon7:c.A565G:p.M189V,Elp3:NM_028811:exon7:c.A508G:p.M170V"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr14	65826534	12A2p6	cell line	sgMsh2	65826534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	131	6	1	0.166666667	exonic	Esco2	synonymous SNV	Esco2:NM_028039:exon7:c.C1200T:p.D400D	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.989258	CGT	synonymous	NA	NA	NA	NA
M2	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	80	12575	3805	0.302584493	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	51	4	0	0	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9950504	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M2	chr14	66110173	12A2p6	cell line	sgMsh2	66110173	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	92	316	80	0.253164557	exonic	Ephx2	nonsynonymous SNV	"Ephx2:NM_001271403:exon2:c.G235T:p.A79S,Ephx2:NM_001271421:exon2:c.G91T:p.A31S,Ephx2:NM_001271402:exon3:c.G130T:p.A44S,Ephx2:NM_007940:exon3:c.G289T:p.A97S"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	152	20	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.794242443	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	174	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9989938	CGG	synonymous	NA	NA	NA	NA
M2	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	86	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.916110331	1	0.9953346	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.212	106	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9951363	TAT	synonymous	NA	NA	NA	NA
M2	chr14	69793939	12A2p6	cell line	sgMsh2	69793939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	51	41	9	0.219512195	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon7:c.A1736G:p.N579S	14qD2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.659767532	2	9.77E-05	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	70638902	12A2p6	cell line	sgMsh2	70638902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	46	0	0	NA	exonic	Fgf17	synonymous SNV	"Fgf17:NM_001360108:exon3:c.G117A:p.R39R,Fgf17:NM_008004:exon3:c.G150A:p.R50R"	14qD2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.992983	GCC	synonymous	NA	NA	NA	NA
M2	chr14	70966311	12A2p6	cell line	sgMsh2	70966311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	44	0	0	NA	exonic	Gfra2	nonsynonymous SNV	"Gfra2:NM_001302095:exon3:c.T500C:p.M167T,Gfra2:NM_001302094:exon4:c.T584C:p.M195T,Gfra2:NM_008115:exon5:c.T899C:p.M300T"	14qD2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9876778	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	50	47	8	0.170212766	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9894119	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	131	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	116	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	CAG	synonymous	NA	NA	NA	NA
M2	chr14	75309767	12A2p6	cell line	sgMsh2	75309767	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	34	15	0.441176471	exonic	Zc3h13	synonymous SNV	"Zc3h13:NM_001359875:exon7:c.T711G:p.A237A,Zc3h13:NM_026083:exon7:c.T711G:p.A237A"	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9747649	CTG	synonymous	NA	NA	NA	NA
M2	chr14	77034020	12A2p6	cell line	sgMsh2	77034020	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	108	26	4	0.153846154	exonic	Lacc1	nonsynonymous SNV	Lacc1:NM_172488:exon4:c.A726T:p.K242N	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr14	78514273	12A2p6	cell line	sgMsh2	78514273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	59	39	6	0.153846154	exonic	Akap11	nonsynonymous SNV	"Akap11:NM_001346784:exon6:c.A673T:p.T225S,Akap11:NM_001164503:exon7:c.A673T:p.T225S"	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.722802647	1	0.6054873	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr14	79064878	12A2p6	cell line	sgMsh2	79064878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	120	43	13	0.302325581	exonic	Vwa8	nonsynonymous SNV	"Vwa8:NM_027906:exon26:c.A2986G:p.S996G,Vwa8:NM_173758:exon26:c.A2986G:p.S996G"	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999609	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	79212753	12A2p6	cell line	sgMsh2	79212753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	244	0	0	NA	exonic	Zfp957	synonymous SNV	Zfp957:NM_001033215:exon3:c.T1605C:p.I535I	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	7.47E-09	CAA	synonymous	NA	NA	NA	NA
M2	chr14	79452358	12A2p6	cell line	sgMsh2	79452358	G	-	Deletion	Strelka2;Vardict	2	0.14	100	0	0	NA	exonic	Kbtbd6	frameshift deletion	Kbtbd6:NM_001034882:exon1:c.303delG:p.G103Afs*9	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.588327736	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M2	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	70	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9865388	GTT	synonymous	NA	NA	NA	NA
M2	chr14	84448513	12A2p6	cell line	sgMsh2	84448513	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	55	0	0	NA	exonic	Pcdh17	frameshift deletion	Pcdh17:NM_001013753:exon1:c.2419delC:p.R808Gfs*3	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.949729059	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	63	23	7	0.304347826	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.840352	ATG	synonymous	NA	NA	NA	NA
M2	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	111	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999264	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	99089660	12A2p6	cell line	sgMsh2	99089660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	40	99	17	0.171717172	exonic	Dis3	synonymous SNV	"Dis3:NM_001360051:exon8:c.T630C:p.I210I,Dis3:NM_028315:exon8:c.T1197C:p.I399I,Dis3:NM_001360050:exon9:c.T915C:p.I305I"	14qE2.2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9893454	CAA	synonymous	NA	NA	NA	NA
M2	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	65	24	2	0.083333333	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.579923054	2	0.9417466	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	101913334	12A2p6	cell line	sgMsh2	101913334	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	112	342	74	0.216374269	exonic	Lmo7	nonsynonymous SNV	"Lmo7:NM_001347628:exon15:c.C2760A:p.S920R,Lmo7:NM_201529:exon18:c.C3459A:p.S1153R"	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.680779237	2	0.09124917	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	186	93	20	0.215053763	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	103314489	12A2p6	cell line	sgMsh2	103314489	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	49	48	2	0.041666667	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon3:c.T404G:p.I135S	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.9943084	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr14	103820781	12A2p6	cell line	sgMsh2	103820781	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	41	0	0	NA	exonic	Ednrb	nonsynonymous SNV	"Ednrb:NM_001276296:exon5:c.G1085T:p.S362I,Ednrb:NM_007904:exon5:c.G1085T:p.S362I,Ednrb:NM_001136061:exon6:c.G1085T:p.S362I"	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.009939273	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	52	0	0	NA	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9873754	GCC	synonymous	NA	NA	NA	NA
M2	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	88	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7803496	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	55	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.533697303	2	0.9448057	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	112	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999314	AAG	synonymous	NA	NA	NA	NA
M2	chr14	118043190	12A2p6	cell line	sgMsh2	118043190	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.2	45	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.G413A:p.R138K	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9238341	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	122	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9999525	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	31	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9656985	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	71	9	1	0.111111111	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9882295	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr14	120022760	12A2p6	cell line	sgMsh2	120022760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	96	0	0	NA	exonic	Oxgr1	nonsynonymous SNV	Oxgr1:NM_001001490:exon4:c.T34C:p.S12P	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	208	374	62	0.165775401	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9993457	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr14	123295446	12A2p6	cell line	sgMsh2	123295446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	59	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon35:c.A3901G:p.M1301V	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	89	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	213	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	121	54	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.714397965	2	0.7806156	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M2	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	100	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.819456489	1	0.9394852	ATG	synonymous	A	5	AAAAA	NA
M2	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	131	3	0	0	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.705993283	2	0.867898	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr15	6844342	12A2p6	cell line	sgMsh2	6844342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	231	8	3	0.375	exonic	Osmr	synonymous SNV	"Osmr:NM_001310469:exon5:c.T573C:p.D191D,Osmr:NM_011019:exon5:c.T573C:p.D191D"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	1.71E-08	AAT	synonymous	NA	NA	NA	NA
M2	chr15	8093722	12A2p6	cell line	sgMsh2	8093722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	189	27	10	0.37037037	exonic	Wdr70	synonymous SNV	"Wdr70:NM_001081402:exon3:c.C129T:p.F43F,Wdr70:NM_001358788:exon3:c.C129T:p.F43F"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999997	CGA	synonymous	NA	NA	NA	NA
M2	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	94	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9986694	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	70	255	46	0.180392157	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9877775	TAT	synonymous	NA	NA	NA	NA
M2	chr15	12205270	12A2p6	cell line	sgMsh2	12205270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	21	26	10	0.384615385	exonic	Mtmr12	synonymous SNV	Mtmr12:NM_172958:exon1:c.A72G:p.V24V	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9607086	TAC	synonymous	CGTA	10	CGTACGTACG	NA
M2	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	132	31	8	0.258064516	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.676576896	2	0.9608665	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	82	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.689183919	2	0.729563	CTT	nonsynonymous	G	5	GGGGG	NA
M2	chr15	13034621	12A2p6	cell line	sgMsh2	13034621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	125	24	10	0.416666667	exonic	Cdh6	nonsynonymous SNV	Cdh6:NM_007666:exon12:c.A1952G:p.D651G	15qA1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999071	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.154	121	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.647160509	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Strelka2;Vardict	2	0.1885	122	56	0	0	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.792141273	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M2	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9863442	TTG	synonymous	NA	NA	NA	NA
M2	chr15	28367833	12A2p6	cell line	sgMsh2	28367833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	79	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon50:c.T8363C:p.V2788A	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9993042	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	170	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9847696	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	31027672	12A2p6	cell line	sgMsh2	31027672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	59	0	0	NA	exonic	Ctnnd2	synonymous SNV	"Ctnnd2:NM_001355502:exon22:c.A3666G:p.X1222X,Ctnnd2:NM_008729:exon23:c.A3741G:p.X1247X"	15qB2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9971718	AAG	synonymous	NA	NA	NA	NA
M2	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	29	899	72	0.080088988	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9772149	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	34136687	12A2p6	cell line	sgMsh2	34136687	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	30	415	79	0.190361446	exonic	Mtdh	nonsynonymous SNV	"Mtdh:NM_001357925:exon9:c.G1273A:p.D425N,Mtdh:NM_026002:exon10:c.G1372A:p.D458N,Mtdh:NM_001357926:exon11:c.G1462A:p.D488N"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9787272	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	217	62	11	0.177419355	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.86568224	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M2	chr15	35300596	12A2p6	cell line	sgMsh2	35300596	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	59	0	0	NA	exonic	Osr2	frameshift deletion	"Osr2:NM_001368665:exon2:c.297delG:p.A101Pfs*35,Osr2:NM_054049:exon2:c.297delG:p.A101Pfs*35"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2	chr15	35674927	12A2p6	cell line	sgMsh2	35674927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	90	62	24	0.387096774	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon33:c.T5192C:p.L1731S	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9996785	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	107	39	9	0.230769231	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999025	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	36221538	12A2p6	cell line	sgMsh2	36221538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	141	1	1	1	exonic	Spag1	synonymous SNV	"Spag1:NM_001359980:exon14:c.T1776C:p.C592C,Spag1:NM_001359984:exon14:c.T1812C:p.C604C,Spag1:NM_012031:exon14:c.T1776C:p.C592C,Spag1:NM_001359982:exon15:c.T1812C:p.C604C,Spag1:NM_001359981:exon16:c.T1812C:p.C604C,Spag1:NM_001359983:exon16:c.T1077C:p.C359C"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.710195624	2	0.8766073	GTC	synonymous	NA	NA	NA	NA
M2	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	108	5676	1889	0.332804792	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999091	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M2	chr15	36600921	12A2p6	cell line	sgMsh2	36600921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	136	8356	1680	0.201053135	exonic	Pabpc1	synonymous SNV	Pabpc1:NM_008774:exon6:c.A825G:p.E275E	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.550506667	2	0.9998771	GTT	synonymous	NA	NA	NA	NA
M2	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	760	151	0.198684211	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.7622549	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr15	39755059	12A2p6	cell line	sgMsh2	39755059	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	122	0	0	NA	exonic	Dcstamp	nonsynonymous SNV	"Dcstamp:NM_001289506:exon2:c.A863T:p.K288M,Dcstamp:NM_001289508:exon2:c.A863T:p.K288M,Dcstamp:NM_001289512:exon2:c.A863T:p.K288M,Dcstamp:NM_001289513:exon2:c.A863T:p.K288M,Dcstamp:NM_029422:exon2:c.A863T:p.K288M"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.743814352	2	0.5252117	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr15	39759453	12A2p6	cell line	sgMsh2	39759453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	129	0	0	NA	exonic	Dcstamp	nonsynonymous SNV	"Dcstamp:NM_001289506:exon3:c.T1166C:p.L389P,Dcstamp:NM_029422:exon3:c.T1169C:p.L390P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.613541781	2	0.9969579	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	206	68	16	0.235294118	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.853075217	1	0.9978199	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr15	47619739	12A2p6	cell line	sgMsh2	47619739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	51	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon61:c.T9859C:p.L3287L	15qB3.3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9950504	AAG	synonymous	NA	NA	NA	NA
M2	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	130	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9997959	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	47711038	12A2p6	cell line	sgMsh2	47711038	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	130	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon39:c.C6171A:p.T2057T	15qB3.3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.8043998	GGG	synonymous	NA	NA	NA	NA
M2	chr15	50831953	12A2p6	cell line	sgMsh2	50831953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	123	5	0	0	exonic	Trps1	synonymous SNV	"Trps1:NM_001310481:exon3:c.T945G:p.T315T,Trps1:NM_001310485:exon3:c.T945G:p.T315T,Trps1:NM_032000:exon3:c.T933G:p.T311T"	15qC	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999683	AAG	synonymous	NA	NA	NA	NA
M2	chr15	51881043	12A2p6	cell line	sgMsh2	51881043	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	135	84	31	0.369047619	exonic	Utp23	synonymous SNV	Utp23:NM_030132:exon2:c.G216T:p.L72L	15qC	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999864	TGG	synonymous	NA	NA	NA	NA
M2	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	126	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.449650484	2	0.9764306	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	101	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.638755827	2	0.964925	TAA	synonymous	NA	NA	NA	NA
M2	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	85	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9995433	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	123	34	9	0.264705882	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999683	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr15	59055080	12A2p6	cell line	sgMsh2	59055080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	63	73	24	0.328767123	exonic	Mtss1	nonsynonymous SNV	"Mtss1:NM_001146180:exon3:c.T146C:p.V49A,Mtss1:NM_144800:exon3:c.T146C:p.V49A"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9978629	TAC	nonsynonymous	GCT	9	GCTGCTGCT	NA
M2	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	59	588	131	0.222789116	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9971718	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	385	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	63937370	12A2p6	cell line	sgMsh2	63937370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	152	339	107	0.315634218	exonic	Cyrib	synonymous SNV	"Cyrib:NM_001360035:exon10:c.A768G:p.V256V,Cyrib:NM_001360037:exon10:c.A768G:p.V256V,Cyrib:NM_001360038:exon10:c.A768G:p.V256V,Cyrib:NM_144846:exon10:c.A768G:p.V256V,Cyrib:NM_001360036:exon11:c.A768G:p.V256V"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999959	TTA	synonymous	NA	NA	NA	NA
M2	chr15	64094034	12A2p6	cell line	sgMsh2	64094034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	143	219	43	0.196347032	exonic	Asap1	nonsynonymous SNV	"Asap1:NM_001276462:exon26:c.T3152C:p.V1051A,Asap1:NM_001276463:exon26:c.T3116C:p.V1039A,Asap1:NM_001276461:exon27:c.T3041C:p.V1014A,Asap1:NM_001276467:exon28:c.T3050C:p.V1017A,Asap1:NM_010026:exon29:c.T3221C:p.V1074A"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.869884581	1	0.9962357	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	87	1	0	0	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.844670535	1	0.9657444	TGA	synonymous	NA	NA	NA	NA
M2	chr15	66615746	12A2p6	cell line	sgMsh2	66615746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	63	44	9	0.204545455	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon12:c.A1478G:p.H493R	15qD2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9978629	CAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M2	chr15	66764446	12A2p6	cell line	sgMsh2	66764446	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	147	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon38:c.G6738T:p.E2246D	15qD2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999941	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	82	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.638755827	2	0.914277	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.99963	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	63	82	34	0.414634146	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9978629	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	169	11	4	0.363636364	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999987	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	76120656	12A2p6	cell line	sgMsh2	76120656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	68	0	0	NA	exonic	BC024139	nonsynonymous SNV	BC024139:NM_001142968:exon13:c.G1819A:p.E607K	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.853075217	1	0.9599184	TCA	nonsynonymous	NA	NA	NA	NA
M2	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	97	315	117	0.371428571	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9998033	GCG	synonymous	NA	NA	NA	NA
M2	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	36	256	57	0.22265625	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9335577	GTG	synonymous	NA	NA	NA	NA
M2	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.305	37	187	42	0.22459893	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9868797	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.306	37	190	44	0.231578947	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9868797	AGA	synonymous	NA	NA	NA	NA
M2	chr15	76353432	12A2p6	cell line	sgMsh2	76353432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	139	308	61	0.198051948	exonic	Maf1	nonsynonymous SNV	"Maf1:NM_001164608:exon6:c.A592G:p.I198V,Maf1:NM_026859:exon6:c.A592G:p.I198V,Maf1:NM_001164607:exon7:c.A592G:p.I198V"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.6492973	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	80	11	0	0	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.945526718	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M2	chr15	76593462	12A2p6	cell line	sgMsh2	76593462	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	110	31	8	0.258064516	exonic	Adck5	nonsynonymous SNV	Adck5:NM_172960:exon5:c.C374T:p.A125V	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.999921	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	138	143	4	0.027972028	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.794242443	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr15	76623460	12A2p6	cell line	sgMsh2	76623460	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	147	197	36	0.182741117	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.T115C:p.Y39H,Vps28:NM_025842:exon6:c.T229C:p.Y77H"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999941	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76634808	12A2p6	cell line	sgMsh2	76634808	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	83	15	1	0.066666667	exonic	Tonsl	nonsynonymous SNV	Tonsl:NM_183091:exon12:c.G1524T:p.E508D	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.9994745	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr15	76638086	12A2p6	cell line	sgMsh2	76638086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	98	10	1	0.1	exonic	Tonsl	nonsynonymous SNV	Tonsl:NM_183091:exon6:c.A706G:p.K236E	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.91190799	1	0.9967763	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr15	76646203	12A2p6	cell line	sgMsh2	76646203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	77	14	0.181818182	exonic	Cyhr1	synonymous SNV	"Cyhr1:NM_001357882:exon4:c.C1180T:p.L394L,Cyhr1:NM_019396:exon5:c.C916T:p.L306L"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.7976988	AGG	synonymous	NA	NA	NA	NA
M2	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	20	5	0.25	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9639544	GGG	synonymous	NA	NA	NA	NA
M2	chr15	76704646	12A2p6	cell line	sgMsh2	76704646	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	84	17	5	0.294117647	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon19:c.G3093T:p.Q1031H	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.73540967	1	0.5577959	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	109	20	5	0.25	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.937122036	1	0.9991739	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	197	530	88	0.166037736	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.701790942	2	0.9815452	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	56	1	0	0	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.82365883	1	0.9146481	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	101	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.684981578	2	0.8535217	CAG	synonymous	NA	NA	NA	NA
M2	chr15	78525319	12A2p6	cell line	sgMsh2	78525319	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	69	13	5	0.384615385	exonic	C1qtnf6	nonsynonymous SNV	C1qtnf6:NM_028331:exon3:c.G327T:p.Q109H	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.760623715	1	0.7458588	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr15	78888161	12A2p6	cell line	sgMsh2	78888161	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	68	145	32	0.220689655	exonic	Gga1	nonsynonymous SNV	Gga1:NM_145929:exon8:c.G660T:p.E220D	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.839698	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	85	1657	416	0.251056126	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.949729059	1	0.9981123	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	67	121	13	0.107438017	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.853075217	1	0.9590877	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr15	79677203	12A2p6	cell line	sgMsh2	79677203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	143	33	11	0.333333333	exonic	Josd1	nonsynonymous SNV	Josd1:NM_028792:exon3:c.C403T:p.L135F	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999922	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	123	87	19	0.218390805	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999683	TCG	synonymous	NA	NA	NA	NA
M2	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	150	1	0	0	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999952	TAT	synonymous	NA	NA	NA	NA
M2	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	114	127	18	0.141732283	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.731207329	2	0.6128155	ATG	synonymous	NA	NA	NA	NA
M2	chr15	81851681	12A2p6	cell line	sgMsh2	81851681	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	43	45	16	0.355555556	exonic	Tob2	nonsynonymous SNV	Tob2:NM_020507:exon2:c.G86T:p.G29V	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9913518	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr15	81917391	12A2p6	cell line	sgMsh2	81917391	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	67	81	15	0.185185185	exonic	Polr3h	nonsynonymous SNV	Polr3h:NM_030229:exon5:c.G370A:p.E124K	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9983854	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr15	82791831	12A2p6	cell line	sgMsh2	82791831	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	204	1	0	0	exonic	Cyp2d26	synonymous SNV	Cyp2d26:NM_029562:exon5:c.C679T:p.L227L	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999999	AGC	synonymous	NA	NA	NA	NA
M2	chr15	82855207	12A2p6	cell line	sgMsh2	82855207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	168	173	37	0.213872832	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.T2042C:p.L681P,Tcf20:NM_013836:exon2:c.T2042C:p.L681P"	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.886693944	1	0.9992475	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr15	83577883	12A2p6	cell line	sgMsh2	83577883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	123	124	17	0.137096774	exonic	Ttll12	synonymous SNV	Ttll12:NM_183017:exon13:c.T1632C:p.A544A	15qE1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.949729059	1	0.9997525	CAG	synonymous	NA	NA	NA	NA
M2	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	239	1	0	0	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	1.02E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	138	360	88	0.244444444	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9887899	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	227	1	1	1	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9994617	CTC	synonymous	NA	NA	NA	NA
M2	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	275	12	6	0.5	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.907705649	1	0.9999966	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	67	45	6	0.133333333	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.790040102	1	0.8520229	GTA	synonymous	NA	NA	NA	NA
M2	chr15	89419923	12A2p6	cell line	sgMsh2	89419923	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.375	124	3	1	0.333333333	exonic	Cpt1b	frameshift deletion	Cpt1b:NM_009948:exon13:c.1544delC:p.P515Lfs*21	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	154	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.907705649	1	0.999595	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr15	91858714	12A2p6	cell line	sgMsh2	91858714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	203	0	0	NA	exonic	Smgc	nonsynonymous SNV	Smgc:NM_198927:exon15:c.T1693C:p.S565P	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9709635	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	78	20	0.256410256	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.827861171	1	0.9672564	CAC	synonymous	NA	NA	NA	NA
M2	chr15	97384571	12A2p6	cell line	sgMsh2	97384571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	119	1	0	0	exonic	Pced1b	nonsynonymous SNV	Pced1b:NM_172293:exon6:c.A490G:p.T164A	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.999958	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	83	139	21	0.151079137	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.827861171	1	0.9427246	GTA	synonymous	NA	NA	NA	NA
M2	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	106	178	31	0.174157303	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.684981578	2	0.873802	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	67	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.8130204	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	200	62	13	0.209677419	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.802647125	1	0.9337089	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	81	60	14	0.233333333	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.748016693	1	0.6513339	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr15	98861651	12A2p6	cell line	sgMsh2	98861651	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	45	7	0.155555556	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon12:c.G3725A:p.G1242E	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	2	1	1	0.9919335	CCC	nonsynonymous	C	5	CCCCC	NA
M2	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	152	30	7	0.233333333	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999959	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	11	3	0.272727273	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.882491604	1	0.9747649	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr15	101024337	12A2p6	cell line	sgMsh2	101024337	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	169	0	0	NA	exonic	Scn8a	nonsynonymous SNV	"Scn8a:NM_011323:exon20:c.G3890T:p.R1297I,Scn8a:NM_001077499:exon21:c.G3890T:p.R1297I"	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.714397965	2	0.9209947	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr15	101270819	12A2p6	cell line	sgMsh2	101270819	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	84	25	0	0	exonic	Nr4a1	synonymous SNV	Nr4a1:NM_010444:exon2:c.T735G:p.T245T	15qF1	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	0.331984937	3	0.9504335	CTT	synonymous	NA	NA	NA	NA
M2	chr15	102445898	12A2p6	cell line	sgMsh2	102445898	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	75	0	0	NA	exonic	Amhr2	nonsynonymous SNV	"Amhr2:NM_144547:exon2:c.G143C:p.G48A,Amhr2:NM_001356575:exon3:c.G143C:p.G48A"	15qF3	chr15-3279130-102454328	5	3	2	0.99	4.160317559	NA	1	1	1	0.9990787	GGC	nonsynonymous	C	5	CCCCC	NA
M2	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	83	15	4	0.266666667	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M2	chr15	102709872	12A2p6	cell line	sgMsh2	102709872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	75	173	35	0.202312139	exonic	Calcoco1	nonsynonymous SNV	Calcoco1:NM_026192:exon11:c.A1481G:p.Q494R	15qF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr15	103333197	12A2p6	cell line	sgMsh2	103333197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	43	0	0	NA	exonic	Zfp385a	synonymous SNV	Zfp385a:NM_013866:exon2:c.C15T:p.S5S	15qF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GGC	synonymous	NA	NA	NA	NA
M2	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	158	60	13	0.216666667	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M2	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	117	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	159	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	3906995	12A2p6	cell line	sgMsh2	3906995	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	29	1	0	0	exonic	1700037C18Rik	nonsynonymous SNV	1700037C18Rik:NM_028484:exon2:c.C204A:p.H68Q	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr16	3994717	12A2p6	cell line	sgMsh2	3994717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	43	11	1	0.090909091	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon4:c.A626G:p.Q209R	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	38	11	4	0.363636364	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M2	chr16	4497210	12A2p6	cell line	sgMsh2	4497210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	0	0	NA	exonic	Srl	synonymous SNV	Srl:NM_175347:exon2:c.A567G:p.G189G	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTC	synonymous	NA	NA	NA	NA
M2	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	61	38	8	0.210526316	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	158	191	34	0.178010471	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999973	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	67	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	CAA	synonymous	NA	NA	NA	NA
M2	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	32	40	12	0.3	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9814629	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	161	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999978	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	163	143	44	0.307692308	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999981	ATG	synonymous	NA	NA	NA	NA
M2	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	95	403	104	0.258064516	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.9564609	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	183	287	79	0.275261324	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999995	CTA	synonymous	NA	NA	NA	NA
M2	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	77	333	84	0.252252252	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	182	53	0.291208791	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	99	93	26	0.279569892	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9918923	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M2	chr16	15663059	12A2p6	cell line	sgMsh2	15663059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	200	41	8	0.195121951	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon11:c.T1043G:p.I348S	16qA2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.752219033	2	0.6698967	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	147	26	4	0.153846154	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.848872876	1	0.9906177	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	121	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999635	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	61	5	2	0.4	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	62	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9420138	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	17257481	12A2p6	cell line	sgMsh2	17257481	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	79	17	3	0.176470588	exonic	Hic2	nonsynonymous SNV	Hic2:NM_178922:exon3:c.G173A:p.R58Q	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	156	56	13	0.232142857	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.680779237	2	0.9797277	CTC	synonymous	NA	NA	NA	NA
M2	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	90	5	0	0	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9972936	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	75	76	21	0.276315789	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9973879	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	17895029	12A2p6	cell line	sgMsh2	17895029	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	2	0	0	exonic	Tssk1	nonsynonymous SNV	Tssk1:NM_009435:exon1:c.G677A:p.R226H	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	52	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9953845	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	55	114	33	0.289473684	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr16	19286026	12A2p6	cell line	sgMsh2	19286026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	119	0	0	NA	exonic	Olfr164	nonsynonymous SNV	Olfr164:NM_146451:exon1:c.A716G:p.K239R	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.613541781	2	0.994566	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	74	399	79	0.197994987	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	170	647	132	0.204018547	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9992949	CTG	synonymous	NA	NA	NA	NA
M2	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	79	17	3	0.176470588	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	48	3	0	0	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	141	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.999991	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	124	349	91	0.260744986	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	23514015	12A2p6	cell line	sgMsh2	23514015	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	97	16	0	0	exonic	Masp1	synonymous SNV	"Masp1:NM_001359083:exon2:c.A69G:p.S23S,Masp1:NM_008555:exon2:c.A69G:p.S23S"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.235331094	3	0.9999019	CTG	synonymous	NA	NA	NA	NA
M2	chr16	26722564	12A2p6	cell line	sgMsh2	26722564	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	112	0	0	NA	exonic	Il1rap	synonymous SNV	"Il1rap:NM_001159317:exon11:c.T1554G:p.S518S,Il1rap:NM_001159318:exon11:c.T1554G:p.S518S"	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	CTG	synonymous	NA	NA	NA	NA
M2	chr16	28372927	12A2p6	cell line	sgMsh2	28372927	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	46	0	0	NA	exonic	Fgf12	nonsynonymous SNV	"Fgf12:NM_001276419:exon3:c.T292G:p.Y98D,Fgf12:NM_001357064:exon3:c.T142G:p.Y48D,Fgf12:NM_183064:exon3:c.T400G:p.Y134D,Fgf12:NM_010199:exon4:c.T214G:p.Y72D"	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9680924	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	29217635	12A2p6	cell line	sgMsh2	29217635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	195	0	0	NA	exonic	Plaat1	synonymous SNV	"Plaat1:NM_001357092:exon2:c.T24C:p.S8S,Plaat1:NM_001361289:exon2:c.T24C:p.S8S,Plaat1:NM_013751:exon2:c.T24C:p.S8S"	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9689101	GTC	synonymous	NA	NA	NA	NA
M2	chr16	30550411	12A2p6	cell line	sgMsh2	30550411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	15	2	0	0	exonic	Tmem44	nonsynonymous SNV	"Tmem44:NM_001357414:exon1:c.T89G:p.F30C,Tmem44:NM_001384248:exon1:c.T89G:p.F30C,Tmem44:NM_172614:exon1:c.T89G:p.F30C"	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9412634	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr16	31944354	12A2p6	cell line	sgMsh2	31944354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	45	0	0	NA	exonic	Pigz	synonymous SNV	Pigz:NM_172822:exon3:c.T229C:p.L77L	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	GTT	synonymous	NA	NA	NA	NA
M2	chr16	32497134	12A2p6	cell line	sgMsh2	32497134	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	73	0	0	NA	exonic	Zdhhc19	synonymous SNV	Zdhhc19:NM_199309:exon2:c.G48A:p.Q16Q	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9989399	AGC	synonymous	NA	NA	NA	NA
M2	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	129	13	3	0.230769231	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999792	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	279	2	0	0	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	1.55E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	181	60	19	0.316666667	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999948	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	33226939	12A2p6	cell line	sgMsh2	33226939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	164	56	12	0.214285714	exonic	Osbpl11	nonsynonymous SNV	Osbpl11:NM_176840:exon9:c.T1271C:p.I424T	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.9375024	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr16	33875813	12A2p6	cell line	sgMsh2	33875813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	79	77	20	0.25974026	exonic	Itgb5	nonsynonymous SNV	"Itgb5:NM_001145884:exon4:c.A373G:p.T125A,Itgb5:NM_010580:exon4:c.A373G:p.T125A"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.939852	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	85	2	0	0	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	34243884	12A2p6	cell line	sgMsh2	34243884	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.18	53	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon14:c.A2423T:p.E808V,Kalrn:NM_177357:exon14:c.A2423T:p.E808V"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.756421374	1	0.7599282	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr16	34879457	12A2p6	cell line	sgMsh2	34879457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	64	13	2	0.153846154	exonic	Mylk	nonsynonymous SNV	Mylk:NM_139300:exon8:c.A1189G:p.T397A	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9980075	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	35825087	12A2p6	cell line	sgMsh2	35825087	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	54	17	2	0.117647059	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon8:c.G1141T:p.V381L	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9959869	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	92	2	1	0.5	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	36517640	12A2p6	cell line	sgMsh2	36517640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	100	0	0	NA	exonic	Casr	nonsynonymous SNV	Casr:NM_013803:exon2:c.A147C:p.Q49H	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.82365883	1	0.9469568	CTT	nonsynonymous	GATCTT	12	GATCTTGATCTT	NA
M2	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	93	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	GAT	synonymous	NA	NA	NA	NA
M2	chr16	36721623	12A2p6	cell line	sgMsh2	36721623	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	38	0	0	NA	exonic	Ildr1	nonsynonymous SNV	"Ildr1:NM_001285788:exon6:c.G729T:p.R243S,Ildr1:NM_134109:exon6:c.G729T:p.R243S"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.647160509	2	0.000710361	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr16	36722222	12A2p6	cell line	sgMsh2	36722222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	38	0	0	NA	exonic	Ildr1	nonsynonymous SNV	"Ildr1:NM_001285791:exon6:c.A983G:p.H328R,Ildr1:NM_001285788:exon7:c.A1115G:p.H372R,Ildr1:NM_134109:exon7:c.A1115G:p.H372R"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9877585	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	36751804	12A2p6	cell line	sgMsh2	36751804	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	76	0	0	NA	exonic	Slc15a2	nonsynonymous SNV	Slc15a2:NM_021301:exon22:c.C2197A:p.L733I	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	83	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9994125	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	43	1	0	0	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9913518	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	209	18	3	0.166666667	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	TCT	synonymous	NA	NA	NA	NA
M2	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	166	1	0	0	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9999902	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	44273749	12A2p6	cell line	sgMsh2	44273749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	166	1	0	0	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.C1037T:p.S346F	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999985	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr16	44386790	12A2p6	cell line	sgMsh2	44386790	A	-	Deletion	Strelka2;Vardict	2	0.2188	96	9	0	0	exonic	Spice1	frameshift deletion	Spice1:NM_144550:exon18:c.2534delA:p.N848Mfs*14	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.919472204	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M2	chr16	45825830	12A2p6	cell line	sgMsh2	45825830	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	115	393	107	0.272264631	exonic	Phldb2	synonymous SNV	"Phldb2:NM_001252442:exon2:c.C252T:p.S84S,Phldb2:NM_001357078:exon2:c.C252T:p.S84S,Phldb2:NM_153412:exon2:c.C252T:p.S84S"	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	AGG	synonymous	NA	NA	NA	NA
M2	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	197	57	15	0.263157895	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	63	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9978629	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	139	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9980681	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	172	813	208	0.255842558	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.999999	CAC	synonymous	NA	NA	NA	NA
M2	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	181	1	1	1	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr16	56675139	12A2p6	cell line	sgMsh2	56675139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	129	0	0	NA	exonic	Abi3bp	synonymous SNV	"Abi3bp:NM_001014399:exon22:c.A2013G:p.P671P,Abi3bp:NM_178790:exon29:c.A2523G:p.P841P,Abi3bp:NM_001014422:exon30:c.A2583G:p.P861P,Abi3bp:NM_001014424:exon31:c.A2631G:p.P877P,Abi3bp:NM_001014423:exon34:c.A2823G:p.P941P"	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999792	CAC	synonymous	NA	NA	NA	NA
M2	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	78	276	81	0.293478261	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9992536	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	57163543	12A2p6	cell line	sgMsh2	57163543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	199	68	11	0.161764706	exonic	Nit2	nonsynonymous SNV	Nit2:NM_023175:exon4:c.G311A:p.G104E	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr16	58493683	12A2p6	cell line	sgMsh2	58493683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	244	263	68	0.258555133	exonic	St3gal6	nonsynonymous SNV	"St3gal6:NM_001357433:exon3:c.A86G:p.Y29C,St3gal6:NM_018784:exon3:c.A86G:p.Y29C,St3gal6:NM_001357434:exon4:c.A86G:p.Y29C,St3gal6:NM_001357435:exon4:c.A86G:p.Y29C"	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	7.47E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr16	58717681	12A2p6	cell line	sgMsh2	58717681	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	97	0	0	NA	exonic	Gpr15	nonsynonymous SNV	Gpr15:NM_001162955:exon1:c.G1044T:p.E348D	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998033	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	220	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
M2	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	179	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	243	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9999831	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr16	59215763	12A2p6	cell line	sgMsh2	59215763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	168	0	0	NA	exonic	Olfr199	synonymous SNV	Olfr199:NM_207550:exon1:c.T849C:p.P283P	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.995101	AAG	synonymous	NA	NA	NA	NA
M2	chr16	59328813	12A2p6	cell line	sgMsh2	59328813	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	239	0	0	NA	exonic	Olfr205	frameshift deletion	Olfr205:NM_001011736:exon1:c.695delG:p.G232Afs*27	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2	chr16	59361437	12A2p6	cell line	sgMsh2	59361437	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.135	220	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.C780A:p.L260L,Olfr209:NM_207551:exon1:c.C780A:p.L260L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.567316031	2	0.9999995	AGA	synonymous	NA	NA	NA	NA
M2	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	49	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9943084	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	71	3	0	0	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2	chr16	59554119	12A2p6	cell line	sgMsh2	59554119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	102	0	0	NA	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon4:c.T6771C:p.S2257S	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	GAC	synonymous	NA	NA	NA	NA
M2	chr16	60060194	12A2p6	cell line	sgMsh2	60060194	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	73	0	0	NA	exonic	Epha6	stopgain	Epha6:NM_007938:exon6:c.G1640A:p.W547X	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9779627	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr16	62811849	12A2p6	cell line	sgMsh2	62811849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	119	21	5	0.238095238	exonic	Arl13b	nonsynonymous SNV	Arl13b:NM_026577:exon5:c.G689T:p.R230I	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr16	63552585	12A2p6	cell line	sgMsh2	63552585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	178	0	0	NA	exonic	Epha3	synonymous SNV	"Epha3:NM_001362452:exon16:c.T2751C:p.G917G,Epha3:NM_010140:exon16:c.T2754C:p.G918G"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9999256	CAC	synonymous	NA	NA	NA	NA
M2	chr16	64766537	12A2p6	cell line	sgMsh2	64766537	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	143	138	40	0.289855072	exonic	4930453N24Rik	nonsynonymous SNV	4930453N24Rik:NM_026273:exon3:c.G823A:p.G275R	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999922	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	78	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M2	chr16	65523509	12A2p6	cell line	sgMsh2	65523509	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	95	0	0	NA	exonic	Pou1f1	frameshift deletion	Pou1f1:NM_001362468:exon1:c.59delA:p.T21Lfs*9	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr16	65828163	12A2p6	cell line	sgMsh2	65828163	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	88	0	0	NA	exonic	Vgll3	synonymous SNV	"Vgll3:NM_001368760:exon2:c.C399T:p.T133T,Vgll3:NM_001368761:exon2:c.C231T:p.T77T,Vgll3:NM_028572:exon2:c.C396T:p.T132T"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.210117048	3	0.9999301	CCC	synonymous	C	5	CCCCC	NA
M2	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	263	29	9	0.310344828	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	2.70E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	55	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	CTG	synonymous	NA	NA	NA	NA
M2	chr16	85544850	12A2p6	cell line	sgMsh2	85544850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	70	0	0	NA	exonic	Cyyr1	synonymous SNV	Cyyr1:NM_144853:exon2:c.C147A:p.S49S	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9120216	AGG	synonymous	NA	NA	NA	NA
M2	chr16	85795509	12A2p6	cell line	sgMsh2	85795509	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	181	48	14	0.291666667	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.C2799A:p.T933T	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	AGG	synonymous	NA	NA	NA	NA
M2	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	125	544	136	0.25	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9956891	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	92	79	20	0.253164557	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.993957	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr16	88707389	12A2p6	cell line	sgMsh2	88707389	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	88	0	0	NA	exonic	2310061N02Rik	nonsynonymous SNV	2310061N02Rik:NM_027155:exon1:c.T519G:p.S173R	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.99963	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr16	89811895	12A2p6	cell line	sgMsh2	89811895	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	81	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145887:exon3:c.C323T:p.T108I,Tiam1:NM_001145886:exon18:c.C3230T:p.T1077I,Tiam1:NM_009384:exon18:c.C3230T:p.T1077I"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	140	37	6	0.162162162	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999904	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.13	47	6	0	0	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.546304326	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M2	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	143	15	7	0.466666667	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999922	CGC	synonymous	NA	NA	NA	NA
M2	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	110	90	22	0.244444444	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.705993283	2	0.7866169	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M2	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	32	112	22	0.196428571	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9814629	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr16	91896360	12A2p6	cell line	sgMsh2	91896360	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	152	6	1	0.166666667	exonic	Itsn1	nonsynonymous SNV	Itsn1:NM_010587:exon32:c.C4087T:p.P1363S	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	44	37	8	0.216216216	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9226158	GTA	synonymous	NA	NA	NA	NA
M2	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	151	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999956	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr16	96683801	12A2p6	cell line	sgMsh2	96683801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	104	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon18:c.T3325C:p.W1109R	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	154	1	0	0	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr17	3164188	12A2p6	cell line	sgMsh2	3164188	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	136	100	21	0.21	exonic	Scaf8	nonsynonymous SNV	Scaf8:NM_134123:exon6:c.G517T:p.G173C	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9978703	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	6029821	12A2p6	cell line	sgMsh2	6029821	-	C	Insertion	Strelka2;Vardict	2	0.2167	60	40	0	0	exonic	Synj2	frameshift insertion	"Synj2:NM_011523:exon22:c.3070dupC:p.P1027Sfs*42,Synj2:NM_001113353:exon23:c.3325dupC:p.P1112Sfs*42"	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.910647288	NA	NA	GAC	frameshift	C	8	CCCCCCCC	1
M2	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	93	25	6	0.24	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	821	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.525292621	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	853	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.529494962	2	1	CCT	synonymous	NA	NA	NA	NA
M2	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	59	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	101	148	27	0.182432432	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998515	CAT	synonymous	NA	NA	NA	NA
M2	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	254	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	4.20E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	251	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	108	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.223	281	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	19066095	12A2p6	cell line	sgMsh2	19066095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	392	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G854T:p.R285M	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	1.03E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	271	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	1.97E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	19521940	12A2p6	cell line	sgMsh2	19521940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	219	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon3:c.A575G:p.Y192C	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	3.84E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	19522240	12A2p6	cell line	sgMsh2	19522240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	180	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon3:c.T875C:p.L292S	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999994	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	470	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.26	380	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M2	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	202	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	152	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9999881	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	146	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999937	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	20277625	12A2p6	cell line	sgMsh2	20277625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	75	0	0	NA	exonic	Vmn2r106	stopgain	"Vmn2r106:NM_001104568:exon4:c.A1351T:p.R451X,Vmn2r106:NM_001385160:exon4:c.A1339T:p.R447X"	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9988686	CTC	nonsynonymous	TC	8	TCTCTCTC	NA
M2	chr17	20472197	12A2p6	cell line	sgMsh2	20472197	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.145	148	0	0	NA	exonic	Vmn2r108	synonymous SNV	Vmn2r108:NM_001104570:exon2:c.G396A:p.Q132Q	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.609339441	2	0.9991803	TCT	synonymous	T	5	TTTTT	NA
M2	chr17	20574669	12A2p6	cell line	sgMsh2	20574669	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	235	0	0	NA	exonic	Vmn2r110	synonymous SNV	Vmn2r110:NM_001104572:exon6:c.C1737A:p.A579A	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	2.42E-08	AGG	synonymous	NA	NA	NA	NA
M2	chr17	20735632	12A2p6	cell line	sgMsh2	20735632	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	177	0	0	NA	exonic	Vmn1r227	nonsynonymous SNV	Vmn1r227:NM_134195:exon1:c.A427T:p.N143Y	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	228	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	2.09E-08	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	169	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	260	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.8129205	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	22571902	12A2p6	cell line	sgMsh2	22571902	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	328	0	0	NA	exonic	Vmn2r111	synonymous SNV	Vmn2r111:NM_001104573:exon2:c.A414G:p.A138A	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.159688957	3	1	TTG	synonymous	NA	NA	NA	NA
M2	chr17	22602486	12A2p6	cell line	sgMsh2	22602486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	283	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.G439A:p.A147T	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.731207329	2	0.9757051	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr17	22603195	12A2p6	cell line	sgMsh2	22603195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	448	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon3:c.T853C:p.F285L	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.617744122	2	1.05E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	22852213	12A2p6	cell line	sgMsh2	22852213	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	184	0	0	NA	exonic	Zfp945	synonymous SNV	"Zfp945:NM_001110254:exon5:c.C774A:p.P258P,Zfp945:NM_177358:exon6:c.C711A:p.P237P"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.794242443	1	0.8866705	AGG	synonymous	NA	NA	NA	NA
M2	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	110	81	21	0.259259259	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9876441	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	80	100	32	0.32	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	37	1	0	0	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9868797	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	24593600	12A2p6	cell line	sgMsh2	24593600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	54	11	3	0.272727273	exonic	Pkd1	nonsynonymous SNV	Pkd1:NM_013630:exon41:c.A11506G:p.R3836G	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9777278	CAG	nonsynonymous	GGTG	8	GGTGGGTG	NA
M2	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	109	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	76	68	10	0.147058824	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.731207329	1	7.47E-08	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	69	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9642122	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M2	chr17	25492187	12A2p6	cell line	sgMsh2	25492187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	79	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.A67G:p.N23D,Sstr5:NM_011425:exon3:c.A67G:p.N23D"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.525292621	2	0.9929055	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	25720619	12A2p6	cell line	sgMsh2	25720619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	91	9	3	0.333333333	exonic	Chtf18	nonsynonymous SNV	Chtf18:NM_145409:exon18:c.T2419C:p.Y807H	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	36	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.722802647	1	0.7175596	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	26117514	12A2p6	cell line	sgMsh2	26117514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	97	14	4	0.285714286	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon4:c.T605C:p.L202P	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998033	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	19	4	2	0.5	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9550432	GAG	synonymous	NA	NA	NA	NA
M2	chr17	27706002	12A2p6	cell line	sgMsh2	27706002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	65	0	0	NA	exonic	Pacsin1	nonsynonymous SNV	"Pacsin1:NM_001286743:exon6:c.A689G:p.Q230R,Pacsin1:NM_001286744:exon6:c.A689G:p.Q230R,Pacsin1:NM_011861:exon6:c.A689G:p.Q230R,Pacsin1:NM_178365:exon6:c.A689G:p.Q230R"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9981424	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	111	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999264	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	72	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9457876	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	69	26	8	0.307692308	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	60	104	25	0.240384615	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9564251	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	84	254	66	0.25984252	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9711954	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	138	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999889	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	122	64	21	0.328125	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.999966	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	32	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.8715124	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M2	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	152	79	6	0.075949367	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.529494962	2	0.999978	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr17	30517143	12A2p6	cell line	sgMsh2	30517143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	173	80	13	0.1625	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon5:c.T995C:p.I332T,Btbd9:NM_172618:exon5:c.T995C:p.I332T"	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9909479	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	30670690	12A2p6	cell line	sgMsh2	30670690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	237	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon15:c.T2196C:p.A732A	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.508483257	2	0.9999992	CTG	synonymous	NA	NA	NA	NA
M2	chr17	30721045	12A2p6	cell line	sgMsh2	30721045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	320	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon36:c.T4964C:p.L1655P	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.579923054	2	2.26E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	30759748	12A2p6	cell line	sgMsh2	30759748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	133	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon60:c.A8998G:p.K3000E	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999428	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	118	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.672374555	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.15	97	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.630351145	2	0.9672668	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	85	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9301765	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	110	37	6	0.162162162	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.777433079	1	0.787138	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M2	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	79	28	4	0.142857143	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.981347	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M2	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	84	72	17	0.236111111	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9995101	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	33137855	12A2p6	cell line	sgMsh2	33137855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	178	0	0	NA	exonic	Morc2b	synonymous SNV	"Morc2b:NM_177719:exon2:c.T942C:p.R314R,Morc2b:NM_001360203:exon3:c.T942C:p.R314R"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9995761	TAC	synonymous	NA	NA	NA	NA
M2	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	55	9	0	0	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9852872	AAG	synonymous	NA	NA	NA	NA
M2	chr17	33749960	12A2p6	cell line	sgMsh2	33749960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	115	23	5	0.217391304	exonic	Rab11b	nonsynonymous SNV	Rab11b:NM_008997:exon2:c.T58C:p.S20P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.672374555	2	0.9386292	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	33919944	12A2p6	cell line	sgMsh2	33919944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	40	37	10	0.27027027	exonic	Tapbp	synonymous SNV	"Tapbp:NM_001025313:exon2:c.T111C:p.G37G,Tapbp:NM_009318:exon2:c.T111C:p.G37G"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9893454	GTG	synonymous	G	5	GGGGG	NA
M2	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	36	99	27	0.272727273	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	21	4	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9465927	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	82	6	3	0.5	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9990051	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	83	7	1	0.142857143	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994745	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	46	8	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.992983	GAG	nonsynonymous	C	5	CCCCC	NA
M2	chr17	34594907	12A2p6	cell line	sgMsh2	34594907	-	G	Insertion	Strelka2;Vardict	2	0.1667	36	150	0	0	exonic	Pbx2	frameshift insertion	Pbx2:NM_017463:exon6:c.978dupG:p.H329Pfs*58	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.70053024	NA	NA	CAG	frameshift	G	5	GGGGG	1
M2	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	82	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9994363	GCT	synonymous	G	5	GGGGG	NA
M2	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	36	2	2	1	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9845025	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	32	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.876437	TAG	synonymous	NA	NA	NA	NA
M2	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	152	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.588327736	2	0.9997765	CAG	synonymous	NA	NA	NA	NA
M2	chr17	34839561	12A2p6	cell line	sgMsh2	34839561	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	41	89	25	0.280898876	exonic	Skiv2l	synonymous SNV	Skiv2l:NM_021337:exon28:c.G3579A:p.L1193L	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.009939273	CCA	synonymous	NA	NA	NA	NA
M2	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	59	112	32	0.285714286	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9969389	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	34928074	12A2p6	cell line	sgMsh2	34928074	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	92	4	0	0	exonic	Slc44a4	nonsynonymous SNV	Slc44a4:NM_023557:exon15:c.C1535G:p.A512G	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.69338626	2	0.7676214	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	486	100	0.205761317	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.999955	CGC	synonymous	NA	NA	NA	NA
M2	chr17	35637471	12A2p6	cell line	sgMsh2	35637471	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	96	8	0	0	exonic	Mucl3	nonsynonymous SNV	Mucl3:NM_001033366:exon2:c.G1235A:p.G412D	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	55	78	22	0.282051282	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	ATG	synonymous	NA	NA	NA	NA
M2	chr17	35689892	12A2p6	cell line	sgMsh2	35689892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	42	175	33	0.188571429	exonic	Ddr1	nonsynonymous SNV	"Ddr1:NM_001198831:exon8:c.A880G:p.T294A,Ddr1:NM_001198833:exon8:c.A880G:p.T294A,Ddr1:NM_172962:exon8:c.A880G:p.T294A,Ddr1:NM_007584:exon9:c.A880G:p.T294A"	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.65136285	2	0.5487003	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	35835148	12A2p6	cell line	sgMsh2	35835148	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	166	1812	438	0.241721854	exonic	Tubb5	nonsynonymous SNV	Tubb5:NM_011655:exon4:c.G1169A:p.R390H	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9999961	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	54	27	4	0.148148148	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9927066	TAC	synonymous	NA	NA	NA	NA
M2	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	116	84	15	0.178571429	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	CAG	synonymous	NA	NA	NA	NA
M2	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	59	105	22	0.20952381	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	79	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.378210687	3	0.6253555	CAG	synonymous	NA	NA	NA	NA
M2	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9877141	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	37624460	12A2p6	cell line	sgMsh2	37624460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	513	0	0	NA	exonic	Olfr116	synonymous SNV	Olfr116:NM_146632:exon1:c.A174G:p.P58P	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	1	TTG	synonymous	NA	NA	NA	NA
M2	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	414	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	423	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	2.65E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M2	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.242	163	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M2	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	148	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.999224	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	38130482	12A2p6	cell line	sgMsh2	38130482	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.237	173	0	0	NA	exonic	Olfr132	frameshift insertion	Olfr132:NM_001005481:exon1:c.708dupA:p.A237Sfs*32	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.99595481	NA	NA	GCT	frameshift	T	5	TTTTT	1
M2	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	125	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9998683	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	358	1	1	1	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	1.82E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	76	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9972547	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	44	2	0	0	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	194	1	0	0	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999785	AGG	synonymous	NA	NA	NA	NA
M2	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	71	1	0	0	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	43624386	12A2p6	cell line	sgMsh2	43624386	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	42	0	0	NA	exonic	Tdrd6	nonsynonymous SNV	"Tdrd6:NM_001161366:exon1:c.A5770G:p.I1924V,Tdrd6:NM_001161367:exon1:c.A5770G:p.I1924V,Tdrd6:NM_198418:exon1:c.A5770G:p.I1924V,Tdrd6:NM_001357985:exon2:c.A5191G:p.I1731V"	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.567316031	2	0.7936043	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	152	106	21	0.198113208	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	46125319	12A2p6	cell line	sgMsh2	46125319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	101	215	46	0.213953488	exonic	Mrps18a	synonymous SNV	Mrps18a:NM_026768:exon4:c.G282T:p.R94R	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998515	GGC	synonymous	NA	NA	NA	NA
M2	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	118	62	10	0.161290323	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.8330383	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	28	93	16	0.172043011	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9755977	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	98	38	3	0.078947368	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	AGG	synonymous	NA	NA	NA	NA
M2	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	70	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9986917	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr17	46446477	12A2p6	cell line	sgMsh2	46446477	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	36	0	0	NA	exonic	Ttbk1	nonsynonymous SNV	Ttbk1:NM_001162864:exon14:c.G3230T:p.R1077L	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	112	91	7	0.076923077	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	33	34	15	0.441176471	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9449329	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	56	63	1	0.015873016	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9965109	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	50919205	12A2p6	cell line	sgMsh2	50919205	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	127	30	12	0.4	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon11:c.A709T:p.M237L,Tbc1d5:NM_001285993:exon11:c.A709T:p.M237L,Tbc1d5:NM_028162:exon11:c.A709T:p.M237L"	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9999595	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr17	53462944	12A2p6	cell line	sgMsh2	53462944	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	151	0	0	NA	exonic	Efhb	nonsynonymous SNV	Efhb:NM_172497:exon1:c.A336T:p.K112N	17qC	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999956	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	23	232	62	0.267241379	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9656829	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	57	15	0.263157895	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9828424	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	2	0	0	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9998106	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	56	1	0	0	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.655565191	2	0.6807801	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	56900050	12A2p6	cell line	sgMsh2	56900050	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	59	54	3	0.055555556	exonic	Mllt1	frameshift deletion	Mllt1:NM_022328:exon6:c.793delG:p.V265Cfs*160	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	109	27	7	0.259259259	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9994767	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	57210260	12A2p6	cell line	sgMsh2	57210260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	95	2	0	0	exonic	C3	synonymous SNV	C3:NM_009778:exon30:c.T3874C:p.L1292L	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	AAG	synonymous	NA	NA	NA	NA
M2	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	191	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999997	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	64133519	12A2p6	cell line	sgMsh2	64133519	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	170	77	18	0.233766234	exonic	Fer	nonsynonymous SNV	"Fer:NM_008000:exon12:c.A1020C:p.E340D,Fer:NM_001286415:exon16:c.A1956C:p.E652D,Fer:NM_001037997:exon17:c.A2130C:p.E710D"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999678	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	136	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9993179	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	90	1130	276	0.244247788	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	TAG	synonymous	NA	NA	NA	NA
M2	chr17	65696356	12A2p6	cell line	sgMsh2	65696356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	142	84	29	0.345238095	exonic	Rab31	nonsynonymous SNV	Rab31:NM_133685:exon5:c.A295G:p.K99E	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9999595	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr17	65810572	12A2p6	cell line	sgMsh2	65810572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	180	43	13	0.302325581	exonic	Ppp4r1	synonymous SNV	"Ppp4r1:NM_001114131:exon5:c.G279A:p.V93V,Ppp4r1:NM_146081:exon5:c.G330A:p.V110V"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9991582	TGC	synonymous	NA	NA	NA	NA
M2	chr17	66354310	12A2p6	cell line	sgMsh2	66354310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	216	61	0.282407407	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon10:c.A3605C:p.K1202T,Mtcl1:NM_172963:exon10:c.A3605C:p.K1202T"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9731724	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	16	65	17	0.261538462	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9450479	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M2	chr17	66498019	12A2p6	cell line	sgMsh2	66498019	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	117	210	53	0.252380952	exonic	Rab12	nonsynonymous SNV	Rab12:NM_024448:exon4:c.G513T:p.K171N	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999517	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	71	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M2	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	137	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.6949277	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	67800789	12A2p6	cell line	sgMsh2	67800789	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	50	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon45:c.T6397G:p.C2133G	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9860465	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	67810356	12A2p6	cell line	sgMsh2	67810356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	65	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon53:c.A7500G:p.R2500R	17qE1.1	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9981424	GAG	synonymous	NA	NA	NA	NA
M2	chr17	68359534	12A2p6	cell line	sgMsh2	68359534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	105	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon3:c.A56G:p.N19S	17qE1.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9996394	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr17	68764561	12A2p6	cell line	sgMsh2	68764561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	68	0	0	NA	exonic	L3mbtl4	synonymous SNV	L3mbtl4:NM_177278:exon19:c.T1482C:p.A494A	17qE1.2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	CTG	synonymous	NA	NA	NA	NA
M2	chr17	69259107	12A2p6	cell line	sgMsh2	69259107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	67	0	0	NA	exonic	Epb41l3	nonsynonymous SNV	"Epb41l3:NM_001355732:exon11:c.A931G:p.S311G,Epb41l3:NM_001355733:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355734:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355735:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355736:exon11:c.A1282G:p.S428G,Epb41l3:NM_013813:exon11:c.A1282G:p.S428G"	17qE1.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9950694	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	16	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9232342	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	71709631	12A2p6	cell line	sgMsh2	71709631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	55	0	0	NA	exonic	Togaram2	nonsynonymous SNV	Togaram2:NM_177087:exon14:c.T1979C:p.L660S	17qE1.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9710467	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr17	72603534	12A2p6	cell line	sgMsh2	72603534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	32	1	1	1	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon1:c.T176C:p.V59A	17qE1.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.876437	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	73161828	12A2p6	cell line	sgMsh2	73161828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	91	8	4	0.5	exonic	Lclat1	nonsynonymous SNV	"Lclat1:NM_001081071:exon2:c.T2C:p.M1T,Lclat1:NM_001177967:exon2:c.T2C:p.M1T,Lclat1:NM_001177968:exon2:c.T2C:p.M1T"	17qE1.3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr17	73805461	12A2p6	cell line	sgMsh2	73805461	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	50	0	0	NA	exonic	Ehd3	synonymous SNV	Ehd3:NM_020578:exon1:c.C219T:p.T73T	17qE2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9946923	CCT	synonymous	NA	NA	NA	NA
M2	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	63	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9978629	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	74690358	12A2p6	cell line	sgMsh2	74690358	A	-	Deletion	Strelka2;Vardict	2	0.2364	110	3	0	0	exonic	Birc6	frameshift deletion	Birc6:NM_007566:exon67:c.13550delA:p.K4519Nfs*1	17qE2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.993433405	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M2	chr17	74724705	12A2p6	cell line	sgMsh2	74724705	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	155	108	22	0.203703704	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon4:c.C496A:p.L166I	17qE2	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.827969	GCT	nonsynonymous	CTG	8	CTGCTGCT	NA
M2	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	42	57	20	0.350877193	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9907285	GTG	synonymous	NA	NA	NA	NA
M2	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	116	78	32	0.41025641	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9797275	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	136	85	19	0.223529412	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9997817	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	78972442	12A2p6	cell line	sgMsh2	78972442	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	109	92	0	0	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon7:c.T848G:p.L283R,Prkd3:NM_001171004:exon8:c.T1133G:p.L378R,Prkd3:NM_029239:exon8:c.T1133G:p.L378R"	17qE3	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.210117048	3	0.9999949	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	132	68	13	0.191176471	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999832	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	141	70	15	0.214285714	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.999991	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M2	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	108	74	16	0.216216216	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999091	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	90	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	49	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.659767532	2	0.5935886	CTC	synonymous	NA	NA	NA	NA
M2	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	53	17	3	0.176470588	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	2	1	1	0.9956962	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr17	86944888	12A2p6	cell line	sgMsh2	86944888	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	110	0	0	NA	exonic	Atp6v1e2	synonymous SNV	Atp6v1e2:NM_029121:exon2:c.G81A:p.A27A	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.764826056	1	0.699884	CCG	synonymous	NA	NA	NA	NA
M2	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.258	71	65	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M2	chr17	87723402	12A2p6	cell line	sgMsh2	87723402	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	200	80	7	0.0875	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon16:c.G2706A:p.E902E	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.281556845	3	0.9999997	AGA	synonymous	NA	NA	NA	NA
M2	chr17	87723464	12A2p6	cell line	sgMsh2	87723464	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	145	78	36	0.461538462	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon16:c.T2768C:p.V923A	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.277354504	3	0.9999806	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr17	87986465	12A2p6	cell line	sgMsh2	87986465	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	79	74	21	0.283783784	exonic	Msh6	nonsynonymous SNV	Msh6:NM_010830:exon4:c.A2647C:p.T883P	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr17	88486683	12A2p6	cell line	sgMsh2	88486683	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	57	53	12	0.226415094	exonic	Foxn2	nonsynonymous SNV	"Foxn2:NM_001355743:exon5:c.G978T:p.E326D,Foxn2:NM_001355742:exon6:c.G1047T:p.E349D,Foxn2:NM_180974:exon6:c.G1047T:p.E349D"	17qE4	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9961985	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr17	90037303	12A2p6	cell line	sgMsh2	90037303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	110	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T194C:p.M65T,Nrxn1:NM_001347419:exon3:c.T203C:p.M68T,Nrxn1:NM_001346960:exon6:c.T1091C:p.M364T,Nrxn1:NM_001346961:exon6:c.T1082C:p.M361T,Nrxn1:NM_001346958:exon7:c.T1172C:p.M391T,Nrxn1:NM_001346959:exon7:c.T1181C:p.M394T,Nrxn1:NM_001346957:exon19:c.T4157C:p.M1386T,Nrxn1:NM_177284:exon21:c.T4262C:p.M1421T,Nrxn1:NM_020252:exon23:c.T4298C:p.M1433T"	17qE5	chr17-3079405-94740433	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7602569	CAT	nonsynonymous	CCA	9	CCACCACCA	NA
M2	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	165	184	49	0.266304348	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	64	20	5	0.25	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	199	151	44	0.291390728	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.9487534	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M2	chr18	6626380	12A2p6	cell line	sgMsh2	6626380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	113	0	0	NA	exonic	4921524L21Rik	nonsynonymous SNV	"4921524L21Rik:NM_001362874:exon4:c.T232C:p.W78R,4921524L21Rik:NM_027598:exon6:c.T391C:p.W131R"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.82365883	1	0.9540404	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	6788502	12A2p6	cell line	sgMsh2	6788502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	76	579	160	0.276338515	exonic	Rab18	synonymous SNV	"Rab18:NM_001278447:exon7:c.T486C:p.D162D,Rab18:NM_181070:exon7:c.T468C:p.D156D"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9991411	ATG	synonymous	NA	NA	NA	NA
M2	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.222	78	171	31	0.18128655	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9957648	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	117	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.996647	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	168	1	1	1	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	14974001	12A2p6	cell line	sgMsh2	14974001	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	115	13	2	0.153846154	exonic	Kctd1	synonymous SNV	"Kctd1:NM_001142731:exon4:c.C2406T:p.Y802Y,Kctd1:NM_134112:exon4:c.C618T:p.Y206Y"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999444	AGT	synonymous	NA	NA	NA	NA
M2	chr18	16633065	12A2p6	cell line	sgMsh2	16633065	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	116	0	0	NA	exonic	Cdh2	synonymous SNV	Cdh2:NM_007664:exon8:c.A1101C:p.T367T	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	CTG	synonymous	GGCTGT	13	GGCTGTGGCTGTG	NA
M2	chr18	16640472	12A2p6	cell line	sgMsh2	16640472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	88	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon7:c.A970G:p.N324D	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9970305	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.629	142	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999917	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr18	21148207	12A2p6	cell line	sgMsh2	21148207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	164	37	0	0	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.G1091T:p.G364V	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.411829415	2	0.6721144	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr18	22017446	12A2p6	cell line	sgMsh2	22017446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	64	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon20:c.A2129G:p.D710G	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9959479	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr18	22524412	12A2p6	cell line	sgMsh2	22524412	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	90	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.G5478T:p.Q1826H	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	95	2	0	0	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	57	54	2	0.037037037	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr18	24271588	12A2p6	cell line	sgMsh2	24271588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	118	510	85	0.166666667	exonic	Galnt1	synonymous SNV	"Galnt1:NM_001160404:exon9:c.T981C:p.I327I,Galnt1:NM_001361200:exon9:c.T981C:p.I327I,Galnt1:NM_013814:exon9:c.T981C:p.I327I"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.999131	TTT	synonymous	NA	NA	NA	NA
M2	chr18	25151231	12A2p6	cell line	sgMsh2	25151231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	231	29	11	0.379310345	exonic	Tpgs2	synonymous SNV	"Tpgs2:NM_001004361:exon3:c.T219C:p.G73G,Tpgs2:NM_001142697:exon3:c.T78C:p.G26G,Tpgs2:NM_001142698:exon3:c.T219C:p.G73G"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9771635	AAC	synonymous	NA	NA	NA	NA
M2	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	53	6	1	0.166666667	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	16	31	6	0.193548387	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9450479	GGG	synonymous	NA	NA	NA	NA
M2	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	74	13	9	0.692307692	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	74	56	20	0.357142857	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	116	85	33	0.388235294	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	124	47	13	0.276595745	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9973544	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	101	149	26	0.174496644	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998515	TAC	synonymous	T	5	TTTTT	NA
M2	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	104	766	189	0.246736292	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	ATT	synonymous	NA	NA	NA	NA
M2	chr18	35739535	12A2p6	cell line	sgMsh2	35739535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	123	28	11	0.392857143	exonic	Sting1	nonsynonymous SNV	"Sting1:NM_001289591:exon2:c.G190T:p.G64C,Sting1:NM_001289592:exon3:c.G43T:p.G15C,Sting1:NM_028261:exon3:c.G43T:p.G15C"	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr18	36737822	12A2p6	cell line	sgMsh2	36737822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	67	32	13	0.40625	exonic	Tmco6	synonymous SNV	Tmco6:NM_028036:exon4:c.C468A:p.T156T	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	CCT	synonymous	ACCT	19	CCTACCTCCTCACCTACCT	NA
M2	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	77	316	83	0.262658228	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	36960578	12A2p6	cell line	sgMsh2	36960578	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	205	0	0	NA	exonic	Pcdha5	nonsynonymous SNV	Pcdha5:NM_009959:exon1:c.C139A:p.R47S	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	266	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	2.38E-09	ATT	synonymous	ATT	9	ATTATTATT	NA
M2	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.9992496	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	37295830	12A2p6	cell line	sgMsh2	37295830	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	185	1	0	0	exonic	Pcdhb2	nonsynonymous SNV	Pcdhb2:NM_053127:exon1:c.A855C:p.Q285H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr18	37296685	12A2p6	cell line	sgMsh2	37296685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	249	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.T1710G:p.S570S	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	7.36E-09	CTT	synonymous	NA	NA	NA	NA
M2	chr18	37296838	12A2p6	cell line	sgMsh2	37296838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	354	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.G1863A:p.A621A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	8.67E-09	CGC	synonymous	NA	NA	NA	NA
M2	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.158	78	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.663969873	2	0.8196205	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	235	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	1.32E-08	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	167	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9999964	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	37412094	12A2p6	cell line	sgMsh2	37412094	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.23	186	0	0	NA	exonic	Pcdhb10	frameshift insertion	Pcdhb10:NM_053135:exon1:c.223dupT:p.L75Ffs*18	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.966538423	NA	NA	TCT	frameshift	NA	NA	NA	1
M2	chr18	37442887	12A2p6	cell line	sgMsh2	37442887	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	109	0	0	NA	exonic	Pcdhb13	frameshift deletion	Pcdhb13:NM_053138:exon1:c.317delG:p.V107Cfs*2	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.903503308	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	74	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	ATT	nonsynonymous	T	5	TTTTT	NA
M2	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	102	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	CAG	synonymous	NA	NA	NA	NA
M2	chr18	37499088	12A2p6	cell line	sgMsh2	37499088	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	409	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	217	2	1	0.5	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	4.41E-08	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	219	227	45	0.198237885	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	3.84E-08	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	44	17	0.386363636	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	137	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	128	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9997292	GTT	nonsynonymous	T	5	TTTTT	NA
M2	chr18	42053994	12A2p6	cell line	sgMsh2	42053994	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	112	0	0	NA	exonic	Sh3rf2	synonymous SNV	"Sh3rf2:NM_001146299:exon1:c.C177T:p.S59S,Sh3rf2:NM_172966:exon1:c.C177T:p.S59S"	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	GCA	synonymous	NA	NA	NA	NA
M2	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	66	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9881559	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	126	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.971689	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	110	32	7	0.21875	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.7311405	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	121	7	3	0.428571429	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9994586	AAG	synonymous	NA	NA	NA	NA
M2	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	287	653	135	0.206738132	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	1.32E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	47281795	12A2p6	cell line	sgMsh2	47281795	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	147	0	0	NA	exonic	Sema6a	frameshift deletion	"Sema6a:NM_001311097:exon13:c.1427delA:p.K476Sfs*6,Sema6a:NM_018744:exon13:c.1427delA:p.K476Sfs*6"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	CACT	8	CACTCACT	-1
M2	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	110	53	10	0.188679245	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.999921	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	28	69	21	0.304347826	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9755977	CGA	synonymous	NA	NA	NA	NA
M2	chr18	53895929	12A2p6	cell line	sgMsh2	53895929	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	171	332	39	0.11746988	exonic	Csnk1g3	synonymous SNV	Csnk1g3:NM_152809:exon2:c.T153C:p.C51C	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.239533435	3	4.62E-08	GTG	synonymous	NA	NA	NA	NA
M2	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	64	23	9	0.391304348	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9980075	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	85	102	17	0.166666667	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.8922968	CTA	synonymous	NA	NA	NA	NA
M2	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	87	91	25	0.274725275	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9991812	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr18	58890304	12A2p6	cell line	sgMsh2	58890304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	60	0	0	NA	exonic	Adamts19	nonsynonymous SNV	Adamts19:NM_175506:exon3:c.T770C:p.L257P	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9956607	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	86	60	19	0.316666667	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995743	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	61839753	12A2p6	cell line	sgMsh2	61839753	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	120	0	0	NA	exonic	Ablim3	nonsynonymous SNV	"Ablim3:NM_198649:exon7:c.A694G:p.T232A,Ablim3:NM_001164491:exon8:c.A694G:p.T232A,Ablim3:NM_001360868:exon8:c.A694G:p.T232A"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9990611	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	63724138	12A2p6	cell line	sgMsh2	63724138	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	148	17	3	0.176470588	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001014981:exon4:c.A284G:p.D95G,Wdr7:NM_001360837:exon4:c.A284G:p.D95G"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9999899	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr18	64507819	12A2p6	cell line	sgMsh2	64507819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	176	1545	355	0.229773463	exonic	Nars	nonsynonymous SNV	"Nars:NM_001377023:exon7:c.A442G:p.S148G,Nars:NM_001142950:exon8:c.A532G:p.S178G,Nars:NM_001377021:exon8:c.A535G:p.S179G,Nars:NM_001377022:exon8:c.A526G:p.S176G,Nars:NM_027350:exon8:c.A529G:p.S177G"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9999612	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	64507838	12A2p6	cell line	sgMsh2	64507838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	135	1488	361	0.242607527	exonic	Nars	synonymous SNV	"Nars:NM_001377023:exon7:c.A423C:p.V141V,Nars:NM_001142950:exon8:c.A513C:p.V171V,Nars:NM_001377021:exon8:c.A516C:p.V172V,Nars:NM_001377022:exon8:c.A507C:p.V169V,Nars:NM_027350:exon8:c.A510C:p.V170V"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999864	CTA	synonymous	NA	NA	NA	NA
M2	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	107	50	15	0.3	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.630351145	2	0.9804057	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr18	67401661	12A2p6	cell line	sgMsh2	67401661	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	146	123	11	0.089430894	exonic	Tubb6	frameshift deletion	Tubb6:NM_026473:exon4:c.629delT:p.I210Tfs*7	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATC	frameshift	NA	NA	NA	-1
M2	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	82	209	49	0.234449761	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9968786	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	79	33	9	0.272727273	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	TTT	synonymous	NA	NA	NA	NA
M2	chr18	67841400	12A2p6	cell line	sgMsh2	67841400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	85	31	7	0.225806452	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon20:c.A3573G:p.S1191S	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.999177	CAT	synonymous	NA	NA	NA	NA
M2	chr18	69465441	12A2p6	cell line	sgMsh2	69465441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	102	64	14	0.21875	exonic	Tcf4	nonsynonymous SNV	"Tcf4:NM_001083967:exon5:c.A298G:p.I100V,Tcf4:NM_001361126:exon5:c.A298G:p.I100V,Tcf4:NM_001361127:exon5:c.A298G:p.I100V,Tcf4:NM_001361128:exon5:c.A298G:p.I100V,Tcf4:NM_001361129:exon5:c.A298G:p.I100V,Tcf4:NM_013685:exon5:c.A298G:p.I100V"	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr18	70522800	12A2p6	cell line	sgMsh2	70522800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	84	30	4	0.133333333	exonic	Poli	nonsynonymous SNV	"Poli:NM_001136090:exon6:c.A673G:p.T225A,Poli:NM_001289515:exon6:c.A298G:p.T100A,Poli:NM_001289516:exon6:c.A604G:p.T202A,Poli:NM_011972:exon6:c.A862G:p.T288A"	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	71262881	12A2p6	cell line	sgMsh2	71262881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	80	0	0	NA	exonic	Dcc	synonymous SNV	Dcc:NM_007831:exon28:c.T4180C:p.L1394L	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9993513	AAA	synonymous	NA	NA	NA	NA
M2	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	102	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr18	73870032	12A2p6	cell line	sgMsh2	73870032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	116	0	0	NA	exonic	Mro	synonymous SNV	"Mro:NM_001360973:exon2:c.A486G:p.L162L,Mro:NM_027741:exon3:c.A75G:p.L25L,Mro:NM_001305882:exon4:c.A75G:p.L25L"	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.7233317	TAT	synonymous	TCCT	9	TCCTTCCTT	NA
M2	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	125	66	15	0.227272727	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999725	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	45	6	1	0.166666667	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	104	19	5	0.263157895	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9835503	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	78185849	12A2p6	cell line	sgMsh2	78185849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	59	0	0	NA	exonic	Slc14a2	nonsynonymous SNV	"Slc14a2:NM_001110274:exon5:c.A494C:p.Y165S,Slc14a2:NM_030683:exon9:c.A908C:p.Y303S,Slc14a2:NM_207651:exon9:c.A908C:p.Y303S"	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	2	1	1	0.9971718	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999517	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	110	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.160317559	NA	1	0.714397965	2	0.7305293	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	132	107	19	0.177570093	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	3717098	12A2p6	cell line	sgMsh2	3717098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	100	138	28	0.202898551	exonic	1810055G02Rik	synonymous SNV	"1810055G02Rik:NM_001358256:exon4:c.C684T:p.P228P,1810055G02Rik:NM_001358257:exon4:c.C684T:p.P228P,1810055G02Rik:NM_001358258:exon4:c.C684T:p.P228P,1810055G02Rik:NM_028077:exon4:c.C684T:p.P228P"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M2	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	60	17	3	0.176470588	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.592	61	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	1	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	90	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	44	3	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M2	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	204	2	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	227	34	9	0.264705882	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	168	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M2	chr19	4872243	12A2p6	cell line	sgMsh2	4872243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	156	1	0	0	exonic	Actn3	synonymous SNV	Actn3:NM_013456:exon3:c.T375C:p.A125A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M2	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	80	1	0	0	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	5570099	12A2p6	cell line	sgMsh2	5570099	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	8	1	0.125	exonic	Ap5b1	nonsynonymous SNV	"Ap5b1:NM_001033448:exon2:c.C1546T:p.P516S,Ap5b1:NM_001362046:exon3:c.C1546T:p.P516S"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr19	5570105	12A2p6	cell line	sgMsh2	5570105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	53	8	1	0.125	exonic	Ap5b1	nonsynonymous SNV	"Ap5b1:NM_001033448:exon2:c.A1552G:p.R518G,Ap5b1:NM_001362046:exon3:c.A1552G:p.R518G"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.532	101	82	37	0.451219512	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr19	5673337	12A2p6	cell line	sgMsh2	5673337	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	57	106	19	0.179245283	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon24:c.C3829A:p.L1277I	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	48	48	6	0.125	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	44	177	34	0.192090395	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr19	5880446	12A2p6	cell line	sgMsh2	5880446	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1	1	1	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_134154:exon4:c.G160T:p.G54C,Slc25a45:NM_001361973:exon5:c.G160T:p.G54C"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	5906575	12A2p6	cell line	sgMsh2	5906575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	96	281	35	0.12455516	exonic	Dpf2	synonymous SNV	"Dpf2:NM_001291078:exon3:c.C250A:p.R84R,Dpf2:NM_011262:exon3:c.C250A:p.R84R"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CGG	synonymous	NA	NA	NA	NA
M2	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	93	263	37	0.140684411	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M2	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	29	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.128	43	14	5	0.357142857	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.537899644	2	0.009873388	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	68	0	0	NA	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.773230738	1	0.7975404	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	79	83	26	0.313253012	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.609339441	2	0.952093	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	61	1185	277	0.233755274	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9975414	TGC	synonymous	NA	NA	NA	NA
M2	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	51	49	9	0.183673469	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9950504	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	7427840	12A2p6	cell line	sgMsh2	7427840	T	-	Deletion	Strelka2;Vardict	2	0.1923	182	1239	253	0.204196933	exonic	Rtn3	frameshift deletion	"Rtn3:NM_053076:exon7:c.704delA:p.K235Rfs*27,Rtn3:NM_001003933:exon8:c.2828delA:p.K943Rfs*27,Rtn3:NM_001271487:exon8:c.761delA:p.K254Rfs*27,Rtn3:NM_001003934:exon9:c.2885delA:p.K962Rfs*27,Rtn3:NM_001271486:exon9:c.1922delA:p.K641Rfs*27"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.808110168	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M2	chr19	7879416	12A2p6	cell line	sgMsh2	7879416	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	261	0	0	NA	exonic	Slc22a27	nonsynonymous SNV	"Slc22a27:NM_001361980:exon6:c.T932A:p.I311N,Slc22a27:NM_134256:exon8:c.T1256A:p.I419N"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.7509164	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	172	392	48	0.12244898	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.718600306	2	0.09196945	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Vardict	2	0.113	35	7	3	0.428571429	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.47486453	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	99	406	75	0.184729064	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9959231	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	8914562	12A2p6	cell line	sgMsh2	8914562	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	254	385	81	0.21038961	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon19:c.C2266T:p.P756S,Ganab:NM_008060:exon20:c.C2332T:p.P778S"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.739612011	2	0.9189608	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	64	51	13	0.254901961	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9980075	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	9016246	12A2p6	cell line	sgMsh2	9016246	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	175	1115	264	0.2367713	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.C14893T:p.P4965S	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.886693944	1	0.9994008	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.171	35	118	23	0.194915254	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.718600306	1	0.7120399	GTC	synonymous	NA	NA	NA	NA
M2	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	186	386	112	0.29015544	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.878289263	1	0.9992958	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	149	330	94	0.284848485	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999949	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	10442939	12A2p6	cell line	sgMsh2	10442939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	68	40	11	0.275	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon6:c.T734C:p.V245A,Syt7:NM_173067:exon7:c.T866C:p.V289A,Syt7:NM_173068:exon8:c.T1226C:p.V409A,Syt7:NM_001373944:exon9:c.T1358C:p.V453A"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9473968	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	10481287	12A2p6	cell line	sgMsh2	10481287	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	49	1	0	0	exonic	Ppp1r32	nonsynonymous SNV	"Ppp1r32:NM_001368184:exon4:c.G378T:p.K126N,Ppp1r32:NM_133689:exon4:c.G378T:p.K126N"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.714397965	1	0.6249759	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	54	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.949729059	1	0.990163	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	10797897	12A2p6	cell line	sgMsh2	10797897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	79	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon5:c.C860T:p.T287M,Cd6:NM_009852:exon5:c.C860T:p.T287M"	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9993042	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	107	108	28	0.259259259	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.710195624	2	0.7450953	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	87	121	13	0.107438017	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.500078575	2	0.9951027	GTA	synonymous	NA	NA	NA	NA
M2	chr19	11302068	12A2p6	cell line	sgMsh2	11302068	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	261	0	0	NA	exonic	Ms4a14	nonsynonymous SNV	Ms4a14:NM_001377045:exon6:c.C3125T:p.S1042F	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.65136285	2	0.9999628	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr19	12298424	12A2p6	cell line	sgMsh2	12298424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	431	0	0	NA	exonic	Olfr1436	nonsynonymous SNV	Olfr1436:NM_146687:exon1:c.A707G:p.K236R	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.727004988	2	0.9991974	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	12648036	12A2p6	cell line	sgMsh2	12648036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	130	7	2	0.285714286	exonic	Glyat	nonsynonymous SNV	Glyat:NM_145935:exon4:c.A223G:p.T75A	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.924515013	1	0.9994942	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	426	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.6051371	2	1.03E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	341	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.794242443	1	0.9123778	TTG	synonymous	NA	NA	NA	NA
M2	chr19	13146291	12A2p6	cell line	sgMsh2	13146291	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	525	0	0	NA	exonic	Olfr1459	nonsynonymous SNV	Olfr1459:NM_146689:exon1:c.G367A:p.A123T	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9999785	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.134	208	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.56311369	NA	NA	CTA	frameshift	NA	NA	NA	-1
M2	chr19	13235020	12A2p6	cell line	sgMsh2	13235020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	189	0	0	NA	exonic	Olfr1463	nonsynonymous SNV	Olfr1463:NM_001011840:exon1:c.A769G:p.I257V	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.861479899	1	0.9981502	AAT	nonsynonymous	AAC	8	AACAACAA	NA
M2	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	526	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9999951	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M2	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	241	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	288	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	1	1.29E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	13781062	12A2p6	cell line	sgMsh2	13781062	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	246	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.C449A:p.P150Q	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.659767532	2	0.9998533	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr19	13781469	12A2p6	cell line	sgMsh2	13781469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	194	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.A856G:p.M286V	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.630351145	2	0.9997954	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	13781532	12A2p6	cell line	sgMsh2	13781532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.A919G:p.I307V	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9877061	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	13887340	12A2p6	cell line	sgMsh2	13887340	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	126	0	0	NA	exonic	Olfr1504	nonsynonymous SNV	Olfr1504:NM_146634:exon1:c.G869T:p.S290I	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.773230738	1	0.7448741	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	174	337	42	0.12462908	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.6051371	2	0.9998636	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	246	85	11	0.129411765	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.743814352	2	0.8758737	TAC	synonymous	NA	NA	NA	NA
M2	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	52	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.5719284	AAG	synonymous	NA	NA	NA	NA
M2	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	212	222	9	0.040540541	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.9984696	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	91	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.916110331	1	0.9962212	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr19	22897513	12A2p6	cell line	sgMsh2	22897513	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	188	0	0	NA	exonic	Trpm3	stopgain	"Trpm3:NM_001035240:exon13:c.T1668G:p.Y556X,Trpm3:NM_001035241:exon13:c.T1668G:p.Y556X,Trpm3:NM_001362490:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362491:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362498:exon13:c.T1608G:p.Y536X,Trpm3:NM_001362500:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362503:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362507:exon13:c.T1608G:p.Y536X,Trpm3:NM_177341:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362487:exon14:c.T1737G:p.Y579X,Trpm3:NM_001362488:exon14:c.T1737G:p.Y579X,Trpm3:NM_001362499:exon14:c.T1683G:p.Y561X"	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.705993283	2	0.9692593	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr19	23616535	12A2p6	cell line	sgMsh2	23616535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	293	0	0	NA	exonic	1700028P14Rik	nonsynonymous SNV	1700028P14Rik:NM_026188:exon2:c.T242C:p.F81S	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.8079864	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr19	25193454	12A2p6	cell line	sgMsh2	25193454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	168	4	0	0	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon46:c.G6010A:p.D2004N	19qB	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.647160509	2	0.997947	TGA	nonsynonymous	NA	NA	NA	NA
M2	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	213	378	60	0.158730159	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.529494962	2	0.9999998	CTC	synonymous	NA	NA	NA	NA
M2	chr19	28540202	12A2p6	cell line	sgMsh2	28540202	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	98	6	0	0	exonic	Glis3	synonymous SNV	Glis3:NM_175459:exon3:c.A595C:p.R199R	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.7195532	CTG	synonymous	NA	NA	NA	NA
M2	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	180	2	0	0	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.680779237	2	0.9913335	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	129	184	33	0.179347826	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.73540967	2	0.6378317	TCG	synonymous	NA	NA	NA	NA
M2	chr19	31083214	12A2p6	cell line	sgMsh2	31083214	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	150	61	13	0.213114754	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.A149T:p.D50V	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.806849466	1	0.9323857	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	78	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.575720713	2	0.9780066	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	236	58	7	0.120689655	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.663969873	2	0.9996869	GTG	synonymous	NA	NA	NA	NA
M2	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	66	43	10	0.23255814	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	1	0.9982681	TAG	synonymous	NA	NA	NA	NA
M2	chr19	32142860	12A2p6	cell line	sgMsh2	32142860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	91	66	13	0.196969697	exonic	Sgms1	synonymous SNV	"Sgms1:NM_001168526:exon3:c.T645C:p.S215S,Sgms1:NM_001168525:exon7:c.T645C:p.S215S,Sgms1:NM_001362423:exon7:c.T645C:p.S215S,Sgms1:NM_144792:exon7:c.T645C:p.S215S"	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9997003	TAG	synonymous	TAA	8	TAATAATA	NA
M2	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	282	17	0	0	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9969245	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	226	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.609339441	2	0.9999922	TAC	synonymous	NA	NA	NA	NA
M2	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	240	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	9.57E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	173	5	0	0	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.869884581	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M2	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	92	6	0	0	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9997206	GTG	synonymous	NA	NA	NA	NA
M2	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	126	170	25	0.147058824	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.642958168	2	0.9876938	CAG	synonymous	NA	NA	NA	NA
M2	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	170	81	11	0.135802469	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.634553486	2	0.9990826	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	169	94	20	0.212765957	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.958133741	1	0.9999868	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr19	37701052	12A2p6	cell line	sgMsh2	37701052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	100	0	0	NA	exonic	Cyp26a1	nonsynonymous SNV	Cyp26a1:NM_007811:exon7:c.T1195C:p.C399R	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.769028397	1	0.7438414	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	37905361	12A2p6	cell line	sgMsh2	37905361	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	134	1141	31	0.02716915	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon49:c.T5576G:p.I1859S,Myof:NM_001302140:exon50:c.T5615G:p.I1872S"	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.201712367	3	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr19	38071878	12A2p6	cell line	sgMsh2	38071878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	168	37	2	0.054054054	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon8:c.G1176T:p.Q392H,Cep55:NM_001164362:exon9:c.G1176T:p.Q392H,Cep55:NM_001360663:exon9:c.G1176T:p.Q392H,Cep55:NM_028760:exon9:c.G1176T:p.Q392H"	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.710195624	2	0.9349852	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	237	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.609339441	2	0.9999959	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	101	15	0.148514851	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9885662	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	39401783	12A2p6	cell line	sgMsh2	39401783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	242	0	0	NA	exonic	Cyp2c38	synonymous SNV	Cyp2c38:NM_010002:exon7:c.A972G:p.Q324Q	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	8.44E-09	CTT	synonymous	NA	NA	NA	NA
M2	chr19	39513332	12A2p6	cell line	sgMsh2	39513332	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.204	223	0	0	NA	exonic	Cyp2c39	nonsynonymous SNV	"Cyp2c39:NM_001373937:exon2:c.C328A:p.L110I,Cyp2c39:NM_010003:exon2:c.C328A:p.L110I"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.857277558	1	0.9988888	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	25	3	0.12	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9673712	CTG	synonymous	NA	NA	NA	NA
M2	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	179	21	1	0.047619048	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.773230738	1	0.689492	AAG	synonymous	NA	NA	NA	NA
M2	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	1126	192	0.170515098	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.798444784	1	0.09591722	GAC	synonymous	NA	NA	NA	NA
M2	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	42	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9907285	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr19	41874250	12A2p6	cell line	sgMsh2	41874250	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	61	27	8	0.296296296	exonic	Rrp12	nonsynonymous SNV	Rrp12:NM_199447:exon23:c.G2678C:p.G893A	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.920312672	1	0.9877483	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	52	214	58	0.271028037	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.5719284	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	64	54	11	0.203703704	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9980075	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	42	44	8	0.181818182	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9907285	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr19	44155585	12A2p6	cell line	sgMsh2	44155585	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	128	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon6:c.T1048G:p.F350V	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.8051446	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	44536201	12A2p6	cell line	sgMsh2	44536201	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	90	3	1	0.333333333	exonic	Sec31b	nonsynonymous SNV	Sec31b:NM_001033343:exon4:c.G256A:p.G86R	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.491673893	2	0.9943729	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	331	82	16	0.195121951	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	1	1.01E-09	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr19	45001583	12A2p6	cell line	sgMsh2	45001583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	100	30	5	0.166666667	exonic	Sema4g	nonsynonymous SNV	Sema4g:NM_011976:exon15:c.G2100T:p.K700N	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.91190799	1	0.997029	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	94	195	24	0.123076923	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.529494962	2	0.9978183	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	88	205	35	0.170731707	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.727004988	2	0.521138	AAG	synonymous	NA	NA	NA	NA
M2	chr19	45024867	12A2p6	cell line	sgMsh2	45024867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	36	58	16	0.275862069	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon4:c.A1220G:p.Q407R,Lzts2:NM_001130526:exon4:c.A1220G:p.Q407R,Lzts2:NM_145503:exon4:c.A1220G:p.Q407R"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9859386	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	45515913	12A2p6	cell line	sgMsh2	45515913	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	239	48	5	0.104166667	exonic	Btrc	nonsynonymous SNV	"Btrc:NM_001286466:exon9:c.G487T:p.A163S,Btrc:NM_001360127:exon9:c.G1075T:p.A359S,Btrc:NM_009771:exon9:c.G1045T:p.A349S,Btrc:NM_001037758:exon10:c.G1153T:p.A385S,Btrc:NM_001286465:exon10:c.G1153T:p.A385S,Btrc:NM_001360122:exon10:c.G1117T:p.A373S,Btrc:NM_001360126:exon10:c.G1087T:p.A363S,Btrc:NM_001360120:exon11:c.G1195T:p.A399S,Btrc:NM_001360124:exon12:c.G1099T:p.A367S"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.73540967	2	0.9253312	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr19	45557858	12A2p6	cell line	sgMsh2	45557858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	65	32	8	0.25	exonic	Poll	nonsynonymous SNV	"Poll:NM_001330507:exon5:c.A742G:p.T248A,Poll:NM_020032:exon5:c.A742G:p.T248A,Poll:NM_001330506:exon6:c.A742G:p.T248A"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9981424	GTT	nonsynonymous	TAGT	9	TAGTTAGTT	NA
M2	chr19	45975108	12A2p6	cell line	sgMsh2	45975108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	168	31	9	0.290322581	exonic	Armh3	synonymous SNV	Armh3:NM_198296:exon4:c.T165C:p.N55N	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.626148804	2	0.9993641	AAT	synonymous	NA	NA	NA	NA
M2	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	52	20	5	0.25	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9953845	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	38	8	0	0	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.8290542	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr19	46331815	12A2p6	cell line	sgMsh2	46331815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	129	189	32	0.169312169	exonic	Cuedc2	synonymous SNV	"Cuedc2:NM_001164291:exon4:c.T222C:p.G74G,Cuedc2:NM_001164292:exon4:c.T222C:p.G74G,Cuedc2:NM_001164293:exon4:c.T222C:p.G74G,Cuedc2:NM_001164294:exon4:c.T222C:p.G74G,Cuedc2:NM_001164295:exon4:c.T222C:p.G74G,Cuedc2:NM_001164290:exon5:c.T222C:p.G74G,Cuedc2:NM_024192:exon5:c.T222C:p.G74G"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999792	TAC	synonymous	NA	NA	NA	NA
M2	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	75	295	53	0.179661017	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.701790942	2	0.6097703	CTT	synonymous	NA	NA	NA	NA
M2	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	113	225	35	0.155555556	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.663969873	2	0.9510061	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	209	20	2	0.1	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	96	136	23	0.169117647	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9570563	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	174	180	24	0.133333333	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	1	0.5235644	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	102	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9998615	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	48603871	12A2p6	cell line	sgMsh2	48603871	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	290	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon5:c.G974A:p.R325Q	19qD1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.697588601	2	0.9991487	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	125	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999725	GTG	synonymous	NA	NA	NA	NA
M2	chr19	50168562	12A2p6	cell line	sgMsh2	50168562	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	112	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon24:c.G3222A:p.K1074K,Sorcs1:NM_001290356:exon24:c.G3222A:p.K1074K,Sorcs1:NM_001360457:exon24:c.G3222A:p.K1074K,Sorcs1:NM_021377:exon24:c.G3222A:p.K1074K"	19qD1	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.634553486	2	0.9823565	GCT	synonymous	NA	NA	NA	NA
M2	chr19	53832677	12A2p6	cell line	sgMsh2	53832677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	125	0	0	NA	exonic	Rbm20	nonsynonymous SNV	Rbm20:NM_001170847:exon6:c.T1562C:p.V521A	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.748016693	1	0.5072154	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	105	1008	334	0.331349206	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	2	1	1	0.9998878	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr19	56336125	12A2p6	cell line	sgMsh2	56336125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	89	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon32:c.A3476G:p.N1159S,Nrap:NM_198059:exon33:c.A3719G:p.N1240S,Nrap:NM_008733:exon34:c.A3824G:p.N1275S"	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.819456489	1	0.932781	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	101	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.361401323	3	0.8870391	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr19	56436394	12A2p6	cell line	sgMsh2	56436394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	131	13	0	0	exonic	Casp7	nonsynonymous SNV	Casp7:NM_007611:exon5:c.T544C:p.F182L	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.760623715	1	0.6216625	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
M2	chr19	56800176	12A2p6	cell line	sgMsh2	56800176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	177	146	20	0.136986301	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon10:c.A1600G:p.T534A	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9980695	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	81	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.7460281	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M2	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	142	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999917	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr19	58953239	12A2p6	cell line	sgMsh2	58953239	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	54	1	0	0	exonic	Eno4	synonymous SNV	Eno4:NM_178689:exon4:c.G588A:p.P196P	19qD2	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.5907662	CGC	synonymous	GCC	21	GCCGCCGCCGCCGCCGCCGCC	NA
M2	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Strelka2;Vardict	2	0.2174	92	80	16	0.2	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.913588927	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M2	chr19	60814746	12A2p6	cell line	sgMsh2	60814746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	210	86	13	0.151162791	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001167829:exon2:c.T190C:p.Y64H,Dennd10:NM_001360620:exon2:c.T271C:p.Y91H,Dennd10:NM_026437:exon2:c.T190C:p.Y64H"	19qD3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.861479899	1	0.9988858	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	215	117	22	0.188034188	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	5	3	2	0.99	4.160317559	NA	1	0.684981578	2	0.9966508	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M2	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	120	129	15	0.11627907	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.39081771	3	0.6465844	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	4752727	12A2p6	cell line	sgMsh2	4752727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	96	26	7	0.269230769	exonic	Bend7	synonymous SNV	"Bend7:NM_001190400:exon5:c.T579C:p.T193T,Bend7:NM_178663:exon5:c.T579C:p.T193T"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.999789	CTC	synonymous	NA	NA	NA	NA
M2	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	103	21	3	0.142857143	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.714397965	2	0.6951381	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	102	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	11705891	12A2p6	cell line	sgMsh2	11705891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	23	1	0	0	exonic	Il15ra	nonsynonymous SNV	"Il15ra:NM_001271499:exon1:c.C44T:p.P15L,Il15ra:NM_001271500:exon1:c.C44T:p.P15L,Il15ra:NM_001271501:exon1:c.C44T:p.P15L,Il15ra:NM_008358:exon1:c.C44T:p.P15L"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9348346	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	11764179	12A2p6	cell line	sgMsh2	11764179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	140	95	16	0.168421053	exonic	Fbh1	nonsynonymous SNV	"Fbh1:NM_001348234:exon4:c.G580A:p.V194I,Fbh1:NM_001348235:exon4:c.G580A:p.V194I,Fbh1:NM_001348236:exon4:c.G580A:p.V194I,Fbh1:NM_001348237:exon4:c.G580A:p.V194I,Fbh1:NM_015792:exon4:c.G802A:p.V268I"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.43284112	2	0.9292883	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	169	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999987	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	52	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.714397965	1	9.91E-06	AAG	synonymous	NA	NA	NA	NA
M2	chr2	17348728	12A2p6	cell line	sgMsh2	17348728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	123	10	3	0.3	exonic	Nebl	nonsynonymous SNV	"Nebl:NM_028757:exon7:c.T779C:p.M260T,Nebl:NM_001362722:exon26:c.T2720C:p.M907T"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.361401323	3	0.9435291	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	19235585	12A2p6	cell line	sgMsh2	19235585	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	83	0	0	NA	exonic	Armc3	nonsynonymous SNV	"Armc3:NM_001081083:exon3:c.A152T:p.K51M,Armc3:NM_001271563:exon3:c.A152T:p.K51M,Armc3:NM_001271564:exon3:c.A152T:p.K51M,Armc3:NM_001271565:exon3:c.A152T:p.K51M"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9851138	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	48	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9938968	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	102	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.495876234	2	0.9974898	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	22297602	12A2p6	cell line	sgMsh2	22297602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	129	0	0	NA	exonic	Myo3a	synonymous SNV	Myo3a:NM_148413:exon9:c.A861G:p.S287S	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999792	CAG	synonymous	NA	NA	NA	NA
M2	chr2	24076012	12A2p6	cell line	sgMsh2	24076012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	124	0	0	NA	exonic	Tbpl2	nonsynonymous SNV	"Tbpl2:NM_001289689:exon6:c.T965C:p.V322A,Tbpl2:NM_199059:exon6:c.T968C:p.V323A"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999705	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Vardict	2	0.057	78	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.239533435	3	0.9990427	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	67	59	13	0.220338983	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	106	30	0.283018868	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.995283	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	53	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9956962	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	25264468	12A2p6	cell line	sgMsh2	25264468	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	65	41	9	0.219512195	exonic	Tprn	nonsynonymous SNV	Tprn:NM_175286:exon1:c.C1781A:p.P594H	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.65136285	2	0.7767418	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	24	22	5	0.227272727	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9679362	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	66	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9982681	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	79	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.592530077	2	0.9686101	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	26281154	12A2p6	cell line	sgMsh2	26281154	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	37	0	0	NA	exonic	Ccdc187	synonymous SNV	Ccdc187:NM_177841:exon5:c.T1311G:p.P437P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9868797	CAG	synonymous	NA	NA	NA	NA
M2	chr2	26981175	12A2p6	cell line	sgMsh2	26981175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	40	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon7:c.T799C:p.W267R,Adamts13:NM_001290463:exon7:c.T799C:p.W267R,Adamts13:NM_001290464:exon7:c.T799C:p.W267R,Adamts13:NM_001290465:exon7:c.T799C:p.W267R"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9893454	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	28450558	12A2p6	cell line	sgMsh2	28450558	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	54	6	1	0.166666667	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.C199G:p.R67G,Ppp1r26:NM_001368159:exon4:c.C199G:p.R67G"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.727004988	1	0.648729	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	71	84	23	0.273809524	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9882295	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	185	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.416031756	2	0.7491631	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.266	47	33	13	0.393939394	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9934558	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M2	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	77	26	11	0.423076923	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9991993	AAC	synonymous	NA	NA	NA	NA
M2	chr2	29940166	12A2p6	cell line	sgMsh2	29940166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	38	35	13	0.371428571	exonic	Gle1	nonsynonymous SNV	Gle1:NM_028923:exon6:c.G733A:p.V245I	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9877585	GGT	nonsynonymous	AGGTC	10	AGGTCAGGTC	NA
M2	chr2	30025552	12A2p6	cell line	sgMsh2	30025552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	136	282	77	0.273049645	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177668:exon46:c.A5963C:p.D1988A,Sptan1:NM_001369325:exon46:c.A6008C:p.D2003A,Sptan1:NM_001177667:exon47:c.A6023C:p.D2008A,Sptan1:NM_001309460:exon47:c.A6023C:p.D2008A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999873	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	62	17	6	0.352941176	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9977078	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	38	75	17	0.226666667	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9877585	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	135	42	0.311111111	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9997798	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	31356348	12A2p6	cell line	sgMsh2	31356348	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	17	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon15:c.T2328G:p.S776S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.701790942	1	0.771514	CTG	synonymous	NA	NA	NA	NA
M2	chr2	31674516	12A2p6	cell line	sgMsh2	31674516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	98	75	25	0.333333333	exonic	Exosc2	nonsynonymous SNV	Exosc2:NM_144886:exon3:c.T226C:p.Y76H	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr2	32229321	12A2p6	cell line	sgMsh2	32229321	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	49	66	5	0.075757576	exonic	Prrc2b	nonsynonymous SNV	Prrc2b:NM_001159634:exon31:c.G6538A:p.V2180M	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.533697303	2	0.9121613	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	162	625	44	0.0704	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.285759186	3	0.9999896	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	157	97	27	0.278350515	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999971	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	81	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9935555	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	55	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9936277	CAC	synonymous	NA	NA	NA	NA
M2	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	40	30	10	0.333333333	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9893454	CAT	synonymous	NA	NA	NA	NA
M2	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.231	58	179	39	0.217877095	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9946797	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	32776782	12A2p6	cell line	sgMsh2	32776782	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	130	55	9	0.163636364	exonic	Ptrh1	nonsynonymous SNV	Ptrh1:NM_178595:exon3:c.C362A:p.A121D	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.546304326	2	0.9998302	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	33015201	12A2p6	cell line	sgMsh2	33015201	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	123	7	1	0.142857143	exonic	Garnl3	synonymous SNV	"Garnl3:NM_001355202:exon17:c.G909T:p.G303G,Garnl3:NM_178888:exon17:c.G1350T:p.G450G,Garnl3:NM_001355200:exon18:c.G1605T:p.G535G,Garnl3:NM_001355201:exon18:c.G1485T:p.G495G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.09197308	TCC	synonymous	NA	NA	NA	NA
M2	chr2	34224567	12A2p6	cell line	sgMsh2	34224567	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	75	6	1	0.166666667	exonic	Pbx3	synonymous SNV	"Pbx3:NM_001290576:exon3:c.A354G:p.E118E,Pbx3:NM_016768:exon3:c.A354G:p.E118E"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990787	CTT	synonymous	NA	NA	NA	NA
M2	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	147	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.416031756	2	0.7609891	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	92	12	5	0.416666667	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	GAG	synonymous	NA	NA	NA	NA
M2	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	48	16	6	0.375	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M2	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	70	145	14	0.096551724	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.441245802	2	0.9108777	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	36568838	12A2p6	cell line	sgMsh2	36568838	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	254	0	0	NA	exonic	Olfr344	nonsynonymous SNV	Olfr344:NM_146628:exon1:c.A239C:p.K80T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.554709008	2	1.56E-08	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	36735050	12A2p6	cell line	sgMsh2	36735050	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	290	0	0	NA	exonic	Olfr347	nonsynonymous SNV	Olfr347:NM_146943:exon1:c.C728T:p.S243F	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	1.26E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	36938043	12A2p6	cell line	sgMsh2	36938043	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	75	0	0	NA	exonic	Olfr356	nonsynonymous SNV	Olfr356:NM_146624:exon1:c.T923G:p.I308S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9990787	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr2	37381938	12A2p6	cell line	sgMsh2	37381938	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	128	59	6	0.101694915	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon14:c.A2380T:p.T794S,Rc3h2:NM_001290642:exon14:c.A2380T:p.T794S"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.374008346	3	0.8832367	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	54	11	0.203703704	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	AAC	nonsynonymous	A	5	AAAAA	NA
M2	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	94	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	40598457	12A2p6	cell line	sgMsh2	40598457	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	146	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon90:c.C13615T:p.P4539S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.155486616	3	1.43E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.265	127	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M2	chr2	40886759	12A2p6	cell line	sgMsh2	40886759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	91	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon51:c.T8151C:p.D2717D	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.989621	AAT	synonymous	AAG	8	AAGAAGAA	NA
M2	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	88	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.99963	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M2	chr2	41282216	12A2p6	cell line	sgMsh2	41282216	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	102	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon29:c.T4760C:p.V1587A	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.264747481	3	0.9996596	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	58	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	GTG	synonymous	NA	NA	NA	NA
M2	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	57	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.86568224	1	0.9600614	GAG	synonymous	NA	NA	NA	NA
M2	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	105	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9998878	GAT	synonymous	NA	NA	NA	NA
M2	chr2	43629049	12A2p6	cell line	sgMsh2	43629049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	50	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon9:c.A829G:p.K277E,Kynu:NM_001289594:exon9:c.A829G:p.K277E,Kynu:NM_027552:exon9:c.A829G:p.K277E"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9946923	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	96	232	60	0.25862069	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	AAA	synonymous	A	5	AAAAA	NA
M2	chr2	52199485	12A2p6	cell line	sgMsh2	52199485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	107	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon109:c.C16203T:p.H5401H	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	TGT	synonymous	NA	NA	NA	NA
M2	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	211	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	54857965	12A2p6	cell line	sgMsh2	54857965	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	74	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon7:c.G857A:p.R286K	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	57	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9967467	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	110	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.999921	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.121	44	136	7	0.051470588	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.508483257	2	0.896042	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	60365014	12A2p6	cell line	sgMsh2	60365014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	123	7	0	0	exonic	Ly75	nonsynonymous SNV	Ly75:NM_013825:exon4:c.A799G:p.T267A	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.550506667	2	0.9996559	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	137	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	ACT	synonymous	NA	NA	NA	NA
M2	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.136	89	5	0	0	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.571518372	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M2	chr2	65363381	12A2p6	cell line	sgMsh2	65363381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	81	0	0	NA	exonic	Slc38a11	synonymous SNV	Slc38a11:NM_177074:exon2:c.T126C:p.N42N	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.512685598	2	0.9941133	CAT	synonymous	NA	NA	NA	NA
M2	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	145	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.378210687	3	0.8923354	GTT	synonymous	NA	NA	NA	NA
M2	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.26	129	5	0	0	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999792	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.262	128	7	0	0	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M2	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	127	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	67509470	12A2p6	cell line	sgMsh2	67509470	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	127	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A2054G:p.K685R,Xirp2:NM_001083919:exon7:c.A2054G:p.K685R"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.222724071	3	0.9999986	AAA	nonsynonymous	A	5	AAAAA	NA
M2	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	221	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr2	67511630	12A2p6	cell line	sgMsh2	67511630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	218	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A4214C:p.N1405T,Xirp2:NM_001083919:exon7:c.A4214C:p.N1405T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	4.12E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	220	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	3.59E-08	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	69479160	12A2p6	cell line	sgMsh2	69479160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	84	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon44:c.T8394G:p.S2798R	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	188	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.395020051	3	0.7808854	TAT	synonymous	NA	NA	NA	NA
M2	chr2	69509218	12A2p6	cell line	sgMsh2	69509218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	194	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon22:c.C3348A:p.T1116T	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	AGG	synonymous	NA	NA	NA	NA
M2	chr2	73199427	12A2p6	cell line	sgMsh2	73199427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	50	265	62	0.233962264	exonic	Ola1	nonsynonymous SNV	"Ola1:NM_025942:exon4:c.C347T:p.A116V,Ola1:NM_030091:exon4:c.C347T:p.A116V"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9946923	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	26	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9629835	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	81	2	0	0	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9693459	AGC	synonymous	NA	NA	NA	NA
M2	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	79	142	49	0.345070423	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	76728473	12A2p6	cell line	sgMsh2	76728473	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon164:c.G64082A:p.R21361H,Ttn:NM_011652:exon285:c.G83825A:p.R27942H,Ttn:NM_001385708:exon322:c.G89657A:p.R29886H"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994363	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr2	76742229	12A2p6	cell line	sgMsh2	76742229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	161	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.T53338C:p.F17780L,Ttn:NM_011652:exon275:c.T73081C:p.F24361L,Ttn:NM_001385708:exon312:c.T78913C:p.F26305L"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999978	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	76753846	12A2p6	cell line	sgMsh2	76753846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	160	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon152:c.T41936C:p.L13979P,Ttn:NM_011652:exon273:c.T61679C:p.L20560P,Ttn:NM_001385708:exon310:c.T67511C:p.L22504P"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999976	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	76755704	12A2p6	cell line	sgMsh2	76755704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	180	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon148:c.T40701C:p.G13567G,Ttn:NM_011652:exon269:c.T60444C:p.G20148G,Ttn:NM_001385708:exon306:c.T66276C:p.G22092G"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999994	AAC	synonymous	NA	NA	NA	NA
M2	chr2	76907588	12A2p6	cell line	sgMsh2	76907588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	231	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon45:c.C12606T:p.D4202D,Ttn:NM_001385708:exon47:c.C13119T:p.D4373D"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.999998	GGT	synonymous	NA	NA	NA	NA
M2	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	126	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999743	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	137	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999881	TAT	synonymous	NA	NA	NA	NA
M2	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	82	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.844670535	1	0.9625336	CTA	synonymous	NA	NA	NA	NA
M2	chr2	82258084	12A2p6	cell line	sgMsh2	82258084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	197	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon4:c.T2256C:p.S752S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.857277558	1	0.9979928	GTT	synonymous	NA	NA	NA	NA
M2	chr2	82258554	12A2p6	cell line	sgMsh2	82258554	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	162	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.T2726A:p.V909E	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.932919695	1	0.9999241	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	82950940	12A2p6	cell line	sgMsh2	82950940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	202	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon6:c.G677A:p.R226H	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.7761479	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	154	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9994979	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	544	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.949729059	1	1.00E-09	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M2	chr2	82990941	12A2p6	cell line	sgMsh2	82990941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	229	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T17011G:p.L5671V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.39081771	3	0.919044	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	82992984	12A2p6	cell line	sgMsh2	82992984	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	188	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.C19054T:p.L6352F	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.243735776	3	1.27E-08	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	220	2	0	0	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.289961527	3	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	83915385	12A2p6	cell line	sgMsh2	83915385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	285	0	0	NA	exonic	Zswim2	synonymous SNV	Zswim2:NM_027964:exon9:c.T1708C:p.L570L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.9999091	AAT	synonymous	NA	NA	NA	NA
M2	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	373	82	0.219839142	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9639544	TTG	synonymous	NA	NA	NA	NA
M2	chr2	85353068	12A2p6	cell line	sgMsh2	85353068	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	253	0	0	NA	exonic	Olfr988	frameshift deletion	Olfr988:NM_001011534:exon1:c.857delA:p.N286Tfs*2	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.9539314	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr2	85414571	12A2p6	cell line	sgMsh2	85414571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	294	0	0	NA	exonic	Olfr993	nonsynonymous SNV	Olfr993:NM_146435:exon1:c.A307G:p.I103V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.899300967	1	0.9999964	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	170	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.411829415	2	0.6665456	GTG	synonymous	NA	NA	NA	NA
M2	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;MuSe;Vardict	3	0.084	349	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.352996641	3	0.9999956	AGG	synonymous	NA	NA	NA	NA
M2	chr2	85674886	12A2p6	cell line	sgMsh2	85674886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	188	0	0	NA	exonic	Olfr1006	synonymous SNV	Olfr1006:NM_146570:exon2:c.A264G:p.E88E	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.924515013	1	0.9999631	CTT	synonymous	NA	NA	NA	NA
M2	chr2	85690223	12A2p6	cell line	sgMsh2	85690223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	235	0	0	NA	exonic	Olfr1008	nonsynonymous SNV	Olfr1008:NM_146866:exon1:c.A793G:p.T265A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	1.32E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	312	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.331984937	3	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	230	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.319377914	3	0.9999953	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	85841377	12A2p6	cell line	sgMsh2	85841377	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	149	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A413C:p.K138T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.869884581	1	0.9967963	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	85841428	12A2p6	cell line	sgMsh2	85841428	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	138	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A362G:p.D121G	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.222724071	3	0.9999996	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	85841591	12A2p6	cell line	sgMsh2	85841591	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.T199A:p.S67T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.890896285	1	0.9965316	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	85869531	12A2p6	cell line	sgMsh2	85869531	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	81	0	0	NA	exonic	Olfr1022	frameshift deletion	Olfr1022:NM_146589:exon1:c.938delT:p.L314Wfs*2	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2	chr2	85984396	12A2p6	cell line	sgMsh2	85984396	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	240	0	0	NA	exonic	Olfr1030	stopgain	Olfr1030:NM_146588:exon2:c.C555A:p.C185X	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.802647125	1	0.9442597	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	322	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.680779237	2	0.9999466	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr2	86162804	12A2p6	cell line	sgMsh2	86162804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	158	0	0	NA	exonic	Olfr1043	synonymous SNV	Olfr1043:NM_146577:exon1:c.A144G:p.L48L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999973	TTA	synonymous	NA	NA	NA	NA
M2	chr2	86198265	12A2p6	cell line	sgMsh2	86198265	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	303	0	0	NA	exonic	Olfr1045	synonymous SNV	Olfr1045:NM_147017:exon1:c.T486C:p.C162C	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.197510026	3	1	CAC	synonymous	NA	NA	NA	NA
M2	chr2	86355676	12A2p6	cell line	sgMsh2	86355676	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	138	0	0	NA	exonic	Olfr1056	synonymous SNV	Olfr1056:NM_147018:exon1:c.T705C:p.H235H	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999378	TAT	synonymous	NA	NA	NA	NA
M2	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	292	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.991752469	1	1.50E-09	AAA	synonymous	NA	NA	NA	NA
M2	chr2	86676731	12A2p6	cell line	sgMsh2	86676731	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	218	0	0	NA	exonic	Olfr1086	nonsynonymous SNV	Olfr1086:NM_146592:exon1:c.G601C:p.A201P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.899300967	1	0.9999407	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr2	87002606	12A2p6	cell line	sgMsh2	87002606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	338	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.C636A:p.F212L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	1.01E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	145	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999932	AAA	nonsynonymous	A	6	AAAAAA	NA
M2	chr2	87136127	12A2p6	cell line	sgMsh2	87136127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	261	0	0	NA	exonic	Olfr1110	nonsynonymous SNV	Olfr1110:NM_146769:exon2:c.A193G:p.N65D	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.411829415	2	0.5771249	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	217	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	4.41E-08	TAG	synonymous	NA	NA	NA	NA
M2	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	219	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9977581	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr2	87252409	12A2p6	cell line	sgMsh2	87252409	C	A	SNV	Mutect2;MuSe;Vardict	3	0.071	351	0	0	NA	exonic	Olfr1115	synonymous SNV	Olfr1115:NM_146297:exon1:c.C471A:p.T157T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.298366209	3	1.04E-09	CCC	synonymous	NA	NA	NA	NA
M2	chr2	87309414	12A2p6	cell line	sgMsh2	87309414	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	459	0	0	NA	exonic	Olfr1118	synonymous SNV	Olfr1118:NM_207632:exon1:c.C624A:p.S208S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.811051807	1	0.9940758	CCT	synonymous	NA	NA	NA	NA
M2	chr2	87434694	12A2p6	cell line	sgMsh2	87434694	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	156	0	0	NA	exonic	Olfr1124	nonsynonymous SNV	Olfr1124:NM_147028:exon1:c.T206G:p.L69R	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.899300967	1	0.9994215	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	87575759	12A2p6	cell line	sgMsh2	87575759	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	401	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.G674T:p.S225I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.386615369	3	0.9981971	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	87575796	12A2p6	cell line	sgMsh2	87575796	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	393	0	0	NA	exonic	Olfr1129	synonymous SNV	Olfr1129:NM_001011836:exon1:c.C711T:p.A237A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.928717354	1	3.05E-09	CCA	synonymous	NA	NA	NA	NA
M2	chr2	87628474	12A2p6	cell line	sgMsh2	87628474	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	223	0	0	NA	exonic	Olfr1131	stopgain	Olfr1131:NM_146658:exon1:c.G10T:p.G4X	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.899300967	1	0.9999507	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	223	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	2	1	1	2.93E-08	AGG	synonymous	NA	NA	NA	NA
M2	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Vardict	2	0.046	288	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.193307685	NA	NA	CAT	frameshift	NA	NA	NA	1
M2	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	385	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	87656257	12A2p6	cell line	sgMsh2	87656257	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	412	0	0	NA	exonic	Olfr1134	synonymous SNV	Olfr1134:NM_147030:exon2:c.C663A:p.I221I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9952749	TGA	synonymous	NA	NA	NA	NA
M2	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	205	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
M2	chr2	87711770	12A2p6	cell line	sgMsh2	87711770	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	261	0	0	NA	exonic	Olfr1137	nonsynonymous SNV	Olfr1137:NM_001011833:exon1:c.G135A:p.M45I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999997	TCA	nonsynonymous	NA	NA	NA	NA
M2	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	327	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	1.02E-09	TAC	synonymous	TACT	8	TACTTACT	NA
M2	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	287	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9998839	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	196	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.920312672	1	0.9999661	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	266	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9999853	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	405	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.399222392	3	0.965883	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	87903325	12A2p6	cell line	sgMsh2	87903325	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	390	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.C350A:p.A117D	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.958133741	1	1.05E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr2	87974316	12A2p6	cell line	sgMsh2	87974316	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	233	0	0	NA	exonic	Olfr74	synonymous SNV	Olfr74:NM_054091:exon1:c.A348G:p.L116L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.205914707	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M2	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;MuSe;Vardict	3	0.09	236	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.378210687	3	0.9869282	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	88005967	12A2p6	cell line	sgMsh2	88005967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	308	0	0	NA	exonic	Olfr1160	synonymous SNV	Olfr1160:NM_146649:exon1:c.T810C:p.P270P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.285759186	3	1.09E-09	TAG	synonymous	NA	NA	NA	NA
M2	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Vardict	2	0.036	351	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.151284275	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	215	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.121867888	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr2	88124676	12A2p6	cell line	sgMsh2	88124676	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	395	0	0	NA	exonic	Olfr1166	nonsynonymous SNV	Olfr1166:NM_146650:exon1:c.T308C:p.F103S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.752219033	2	0.9559281	AAA	nonsynonymous	A	5	AAAAA	NA
M2	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Vardict	2	0.041	435	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.17229598	3	1	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr2	88274180	12A2p6	cell line	sgMsh2	88274180	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	229	0	0	NA	exonic	Olfr1173	nonsynonymous SNV	Olfr1173:NM_207566:exon1:c.C868A:p.L290I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.714397965	2	0.9809096	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;MuSe;Vardict	3	0.056	301	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.235331094	3	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M2	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	146	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.857277558	1	0.9936153	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M2	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	107	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.727004988	2	0.6164959	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	239	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.369806005	3	0.9963048	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;MuSe;Vardict	3	0.049	419	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.205914707	3	1	CTA	synonymous	ACT	8	ACTACTAC	NA
M2	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	312	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	1.05E-09	AGG	synonymous	NA	NA	NA	NA
M2	chr2	88896778	12A2p6	cell line	sgMsh2	88896778	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	324	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.C818T:p.T273I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.91190799	1	0.9999997	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr2	88958862	12A2p6	cell line	sgMsh2	88958862	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	314	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.C395A:p.S132Y	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.201712367	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	298	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.289961527	3	1.44E-09	TAA	synonymous	NA	NA	NA	NA
M2	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	135	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.790040102	1	0.8556184	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	89482570	12A2p6	cell line	sgMsh2	89482570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	173	0	0	NA	exonic	Olfr1241	synonymous SNV	Olfr1241:NM_146455:exon1:c.A564G:p.T188T	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9999783	CTG	synonymous	NA	NA	NA	NA
M2	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;MuSe;Vardict	3	0.065	262	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.273152163	3	1.51E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	194	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.365603664	3	0.9915542	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	89943667	12A2p6	cell line	sgMsh2	89943667	T	C	SNV	Mutect2;Vardict	2	0.054	272	0	0	NA	exonic	Olfr1259	synonymous SNV	Olfr1259:NM_146341:exon1:c.A447G:p.G149G	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.226926412	3	1.00E-09	CTC	synonymous	TCCAG	10	TCCAGTCCAG	NA
M2	chr2	89993582	12A2p6	cell line	sgMsh2	89993582	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	463	0	0	NA	exonic	Olfr1261	nonsynonymous SNV	Olfr1261:NM_146474:exon1:c.T188A:p.V63D	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.9539314	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	90015327	12A2p6	cell line	sgMsh2	90015327	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	373	0	0	NA	exonic	Olfr1263	synonymous SNV	Olfr1263:NM_146794:exon1:c.C396T:p.S132S	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.878289263	1	0.9999973	GCC	synonymous	NA	NA	NA	NA
M2	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	183	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999995	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M2	chr2	90149130	12A2p6	cell line	sgMsh2	90149130	A	G	SNV	Mutect2;MuSe;Vardict	3	0.086	373	0	0	NA	exonic	Olfr1270	nonsynonymous SNV	Olfr1270:NM_146985:exon1:c.T875C:p.V292A	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.361401323	3	0.9999888	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	231	161	31	0.192546584	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	90779273	12A2p6	cell line	sgMsh2	90779273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	211	92	22	0.239130435	exonic	Fnbp4	synonymous SNV	Fnbp4:NM_018828:exon16:c.A2919G:p.E973E	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAG	synonymous	GAA	8	GAAGAAGA	NA
M2	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	253	555	43	0.077477477	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.21852173	3	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M2	chr2	91057058	12A2p6	cell line	sgMsh2	91057058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	151	327	77	0.235474006	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon8:c.A891G:p.K297K	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.857277558	1	0.9942986	AAC	synonymous	NA	NA	NA	NA
M2	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	283	88	25	0.284090909	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	2	1	1	1.42E-09	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	234	75	16	0.213333333	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	1.41E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	161	27	3	0.111111111	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.924515013	1	0.9998751	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	91645230	12A2p6	cell line	sgMsh2	91645230	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.103	61	23	3	0.130434783	exonic	Zfp408	synonymous SNV	"Zfp408:NM_001033451:exon4:c.C1578T:p.S526S,Zfp408:NM_001347175:exon5:c.C1878T:p.S626S"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.43284112	2	0.8685205	TGG	synonymous	NA	NA	NA	NA
M2	chr2	91645793	12A2p6	cell line	sgMsh2	91645793	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	54	36	11	0.305555556	exonic	Zfp408	nonsynonymous SNV	"Zfp408:NM_001033451:exon4:c.C1015T:p.R339C,Zfp408:NM_001347175:exon5:c.C1315T:p.R439C"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	0.966538423	1	0.9927066	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	57	78	18	0.230769231	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.160317559	NA	1	1	1	0.9967467	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	162	74	15	0.202702703	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	102846427	12A2p6	cell line	sgMsh2	102846427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	105	3	0	0	exonic	Cd44	nonsynonymous SNV	Cd44:NM_009851:exon7:c.C892T:p.L298F	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.361401323	3	0.09991825	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr2	104646423	12A2p6	cell line	sgMsh2	104646423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	144	77	26	0.337662338	exonic	Cstf3	nonsynonymous SNV	Cstf3:NM_145529:exon6:c.A380C:p.D127A	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	199	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.159688957	3	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	107295923	12A2p6	cell line	sgMsh2	107295923	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	102	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.G1001T:p.R334M	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	83	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994745	CAT	synonymous	NA	NA	NA	NA
M2	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.31	565	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	460	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M2	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	290	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	1.26E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M2	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	206	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	200	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
M2	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	212	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	111780553	12A2p6	cell line	sgMsh2	111780553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	294	0	0	NA	exonic	Olfr1302	nonsynonymous SNV	Olfr1302:NM_146889:exon1:c.A241G:p.T81A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	1.19E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	235	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	1.32E-08	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	112249274	12A2p6	cell line	sgMsh2	112249274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	89	0	0	NA	exonic	Nutm1	synonymous SNV	Nutm1:NM_172521:exon7:c.T2295C:p.G765G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	GAC	synonymous	NA	NA	NA	NA
M2	chr2	112632208	12A2p6	cell line	sgMsh2	112632208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	111	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon104:c.T14522C:p.V4841A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999264	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	113	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.999936	AAC	nonsynonymous	A	5	AAAAA	NA
M2	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	90	29	14	0.482758621	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9996785	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	158	155	64	0.412903226	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999973	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	118205125	12A2p6	cell line	sgMsh2	118205125	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	257	0	0	NA	exonic	Fsip1	nonsynonymous SNV	Fsip1:NM_027759:exon11:c.C1268T:p.T423M	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	3.60E-09	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	86	60	19	0.316666667	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995743	CAC	synonymous	NA	NA	NA	NA
M2	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	47	17	9	0.529411765	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.8742484	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	91	20	1	0.05	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M2	chr2	119294259	12A2p6	cell line	sgMsh2	119294259	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	53	43	11	0.255813953	exonic	Vps18	nonsynonymous SNV	Vps18:NM_172269:exon4:c.A1666G:p.M556V	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	119423663	12A2p6	cell line	sgMsh2	119423663	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	64	48	3	0.0625	exonic	Ino80	nonsynonymous SNV	Ino80:NM_026574:exon24:c.T2858C:p.L953P	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.441245802	2	0.09403786	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	42	15	3	0.2	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9803709	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	35	12	9	0.75	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9849311	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	75	58	22	0.379310345	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9990787	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M2	chr2	120055751	12A2p6	cell line	sgMsh2	120055751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	47	1	0	0	exonic	Sptbn5	nonsynonymous SNV	Sptbn5:NM_001370938:exon46:c.T7615C:p.Y2539H	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9934558	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.343	89	80	0	0	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	185	92	24	0.260869565	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999996	AAC	synonymous	NA	NA	NA	NA
M2	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	72	8	2	0.25	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9988629	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	110	17	3	0.176470588	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.999921	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	57	42	0	0	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.458055166	2	0.00988348	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	89	21	6	0.285714286	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9984755	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.174	41	14	4	0.285714286	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.731207329	1	0.7186024	GTT	synonymous	NA	NA	NA	NA
M2	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	79	5	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	125566533	12A2p6	cell line	sgMsh2	125566533	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	55	6	1	0.166666667	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon26:c.G4100A:p.G1367E	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.996258	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	75	4	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.331984937	3	0.9231904	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	125595037	12A2p6	cell line	sgMsh2	125595037	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.347	53	3	1	0.333333333	exonic	Cep152	frameshift deletion	Cep152:NM_001081091:exon13:c.1582delT:p.S528Rfs*6	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr2	125771458	12A2p6	cell line	sgMsh2	125771458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	120	65	21	0.323076923	exonic	Secisbp2l	synonymous SNV	Secisbp2l:NM_177608:exon4:c.T615C:p.P205P	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999609	CAG	synonymous	NA	NA	NA	NA
M2	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	94	11	1	0.090909091	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.382413028	3	0.6548939	ATA	synonymous	NA	NA	NA	NA
M2	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	149	83	3	0.036144578	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999949	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	68	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9937931	TTA	synonymous	NA	NA	NA	NA
M2	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	158	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999973	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	135	5	2	0.4	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999864	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	102	123	6	0.048780488	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.395020051	3	0.5116318	GTA	synonymous	NA	NA	NA	NA
M2	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.042	150	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.176498321	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	130101144	12A2p6	cell line	sgMsh2	130101144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	183	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.A621G:p.E207E	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999995	AAC	synonymous	NA	NA	NA	NA
M2	chr2	130279206	12A2p6	cell line	sgMsh2	130279206	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	17	67	22	0.328358209	exonic	Nop56	nonsynonymous SNV	Nop56:NM_024193:exon12:c.A1726C:p.K576Q	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9485964	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	80	9	2	0.222222222	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993513	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	102	20	0	0	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.310973232	3	0.9943369	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	130671560	12A2p6	cell line	sgMsh2	130671560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	140	4	3	0.75	exonic	Itpa	synonymous SNV	Itpa:NM_025922:exon3:c.T129C:p.P43P	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999904	CTG	synonymous	NA	NA	NA	NA
M2	chr2	131143627	12A2p6	cell line	sgMsh2	131143627	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	63	0	0	NA	exonic	Hspa12b	nonsynonymous SNV	Hspa12b:NM_028306:exon12:c.A1307G:p.N436S	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9978629	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	58	88	6	0.068181818	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.411829415	2	0.7594896	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	47	78	10	0.128205128	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9934558	ATT	synonymous	NA	NA	NA	NA
M2	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	47	70	32	0.457142857	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9934558	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	2	0	0	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	120	33	6	0.181818182	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999609	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.267	64	57	19	0.333333333	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr2	134643895	12A2p6	cell line	sgMsh2	134643895	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	18	7	2	0.285714286	exonic	Tmx4	synonymous SNV	Tmx4:NM_029148:exon1:c.C111A:p.P37P	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9519236	TGG	synonymous	NA	NA	NA	NA
M2	chr2	136100748	12A2p6	cell line	sgMsh2	136100748	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	129	0	0	NA	exonic	Pak7	nonsynonymous SNV	"Pak7:NM_172858:exon5:c.C1471A:p.L491I,Pak7:NM_001360382:exon6:c.C1471A:p.L491I,Pak7:NM_001360384:exon6:c.C1471A:p.L491I"	2qF3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999792	AGG	nonsynonymous	A	5	AAAAA	NA
M2	chr2	142834127	12A2p6	cell line	sgMsh2	142834127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	123	88	29	0.329545455	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon12:c.T1252A:p.L418M,Kif16b:NM_001355123:exon12:c.T1252A:p.L418M"	2qG1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	148768783	12A2p6	cell line	sgMsh2	148768783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	96	0	0	NA	exonic	Cst11	nonsynonymous SNV	Cst11:NM_030059:exon3:c.A347G:p.Y116C	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	152485942	12A2p6	cell line	sgMsh2	152485942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	115	0	0	NA	exonic	Defb22	nonsynonymous SNV	Defb22:NM_001002791:exon2:c.A322G:p.T108A	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999444	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	121	103	27	0.262135922	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999635	CTG	synonymous	NA	NA	NA	NA
M2	chr2	153231550	12A2p6	cell line	sgMsh2	153231550	G	A	SNV	Mutect2;Vardict	2	0.08	54	33	1	0.03030303	exonic	Plagl2	nonsynonymous SNV	Plagl2:NM_018807:exon3:c.C1430T:p.P477L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.336187278	3	0.7789498	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr2	153891986	12A2p6	cell line	sgMsh2	153891986	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	48	0	0	NA	exonic	Bpifb2	nonsynonymous SNV	Bpifb2:NM_025631:exon14:c.A1247C:p.K416T	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9938968	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr2	154309532	12A2p6	cell line	sgMsh2	154309532	A	G	SNV	Mutect2;Vardict	2	0.024	217	0	0	NA	exonic	Bpifb9b	nonsynonymous SNV	Bpifb9b:NM_001025574:exon2:c.A172G:p.M58V	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.100856183	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	89	8	0	0	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	GCT	synonymous	NA	NA	NA	NA
M2	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	58	557	187	0.33572711	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9969666	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M2	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1809	94	231	2	0.008658009	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.760203481	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M2	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	79	110	37	0.336363636	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	ATA	synonymous	NA	NA	NA	NA
M2	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	22	46	16	0.347826087	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.963277	GTT	synonymous	NA	NA	NA	NA
M2	chr2	155941590	12A2p6	cell line	sgMsh2	155941590	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	81	0	0	NA	exonic	Gdf5	nonsynonymous SNV	Gdf5:NM_008109:exon2:c.T1441C:p.Y481H	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.407627074	2	0.7030818	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	69	3	0	0	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.284	92	123	50	0.406504065	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	282	80	16	0.2	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	1.45E-09	TAT	synonymous	NA	NA	NA	NA
M2	chr2	157196215	12A2p6	cell line	sgMsh2	157196215	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.347	22	22	1	0.045454545	exonic	Rbl1	stopgain	"Rbl1:NM_001139516:exon3:c.431delT:p.L144fs*0,Rbl1:NM_011249:exon3:c.431delT:p.L144fs*0"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M2	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	111	34	1	0.029411765	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.361401323	3	0.917136	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M2	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	106	85	27	0.317647059	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	28	7	2	0.285714286	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9755977	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	156	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999969	AGC	synonymous	NA	NA	NA	NA
M2	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	141	63	13	0.206349206	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9981896	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M2	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	77	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	167991271	12A2p6	cell line	sgMsh2	167991271	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.11	29	0	0	NA	exonic	Ripor3	synonymous SNV	Ripor3:NM_001080708:exon12:c.C978A:p.P326P	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.462257507	2	0.08525553	TGG	synonymous	NA	NA	NA	NA
M2	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	195	253	11	0.043478261	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.294163868	3	0.999998	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	10	2	0	0	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9180997	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	68	73	22	0.301369863	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9984947	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	112	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999314	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	99	1	0	0	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998291	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	72	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.306770891	3	0.9681823	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr2	173118601	12A2p6	cell line	sgMsh2	173118601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	30	0	0	NA	exonic	Ctcfl	nonsynonymous SNV	"Ctcfl:NM_001081387:exon2:c.T188C:p.V63A,Ctcfl:NM_001355185:exon2:c.T188C:p.V63A"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9787272	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	68	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9984947	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr2	174422633	12A2p6	cell line	sgMsh2	174422633	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	182	75	22	0.293333333	exonic	Nelfcd	nonsynonymous SNV	Nelfcd:NM_020580:exon5:c.G493A:p.E165K	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	53	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	2	1	1	0.9956962	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr2	174778642	12A2p6	cell line	sgMsh2	174778642	G	T	SNV	Mutect2;Vardict	2	0.102	37	0	0	NA	exonic	Edn3	nonsynonymous SNV	Edn3:NM_007903:exon3:c.G420T:p.R140S	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.428638779	2	0.7909977	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	58	90	25	0.277777778	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	83	92	12	0.130434783	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	0.374008346	3	0.6937882	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	62	50	23	0.46	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	ATC	nonsynonymous	A	5	AAAAA	NA
M2	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	160	8	4	0.5	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999976	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr3	5242268	12A2p6	cell line	sgMsh2	5242268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	189	11	4	0.363636364	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.T553C:p.S185P,Zfhx4:NM_030708:exon2:c.T553C:p.S185P"	3qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	90	25	8	0.32	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M2	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	151	38	3	0.078947368	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	6617304	12A2p6	cell line	sgMsh2	6617304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	104	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon3:c.A523G:p.M175V	3qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	145	2	2	1	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9999918	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	189	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	14537301	12A2p6	cell line	sgMsh2	14537301	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	62	13	3	0.230769231	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon4:c.T453C:p.C151C,Lrrcc1:NM_001163580:exon4:c.T453C:p.C151C,Lrrcc1:NM_028915:exon4:c.T453C:p.C151C"	3qA1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	GTA	synonymous	NA	NA	NA	NA
M2	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	115	26	6	0.230769231	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9999238	AAG	synonymous	NA	NA	NA	NA
M2	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	89	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	19218307	12A2p6	cell line	sgMsh2	19218307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	259	43	0.166023166	exonic	Mtfr1	nonsynonymous SNV	"Mtfr1:NM_001253390:exon7:c.T904C:p.S302P,Mtfr1:NM_001253391:exon7:c.T904C:p.S302P,Mtfr1:NM_001356295:exon7:c.T904C:p.S302P,Mtfr1:NM_026182:exon7:c.T904C:p.S302P"	3qA2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	104	33	9	0.272727273	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	ACA	synonymous	NA	NA	NA	NA
M2	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	107	128	28	0.21875	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	AAT	nonsynonymous	A	5	AAAAA	NA
M2	chr3	20150581	12A2p6	cell line	sgMsh2	20150581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	81	66	17	0.257575758	exonic	Gyg	nonsynonymous SNV	"Gyg:NM_001355261:exon4:c.A439G:p.N147D,Gyg:NM_013755:exon4:c.A439G:p.N147D"	3qA2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	28663993	12A2p6	cell line	sgMsh2	28663993	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	173	0	0	NA	exonic	Tnik	nonsynonymous SNV	"Tnik:NM_001163008:exon28:c.A3513G:p.I1171M,Tnik:NM_001163007:exon29:c.A3600G:p.I1200M,Tnik:NM_001163009:exon29:c.A3600G:p.I1200M,Tnik:NM_026910:exon30:c.A3624G:p.I1208M"	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.159688957	3	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	228	2	1	0.5	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.6329029	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr3	30810494	12A2p6	cell line	sgMsh2	30810494	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	94	326	84	0.257668712	exonic	Sec62	nonsynonymous SNV	"Sec62:NM_001357528:exon5:c.A506T:p.K169I,Sec62:NM_027016:exon5:c.A506T:p.K169I"	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr3	31037869	12A2p6	cell line	sgMsh2	31037869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	147	180	30	0.166666667	exonic	Prkci	synonymous SNV	Prkci:NM_008857:exon9:c.T726C:p.G242G	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	GTA	synonymous	NA	NA	NA	NA
M2	chr3	31098119	12A2p6	cell line	sgMsh2	31098119	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	134	267	57	0.213483146	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon2:c.T789A:p.H263Q,Skil:NM_011386:exon2:c.T789A:p.H263Q,Skil:NM_001271772:exon4:c.T549A:p.H183Q"	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9999825	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	106	141	26	0.184397163	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998954	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	48	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9938968	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	35806800	12A2p6	cell line	sgMsh2	35806800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	35	63	14	0.222222222	exonic	Atp11b	nonsynonymous SNV	Atp11b:NM_029570:exon12:c.T1035G:p.F345L	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9849311	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	153	112	24	0.214285714	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999961	TTG	synonymous	NA	NA	NA	NA
M2	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	215	46	10	0.217391304	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.73540967	2	0.8900635	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	38887541	12A2p6	cell line	sgMsh2	38887541	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	96	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon1:c.T582C:p.S194S	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.273152163	3	0.9990428	GTG	synonymous	NA	NA	NA	NA
M2	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	149	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999949	TGC	synonymous	NA	NA	NA	NA
M2	chr3	41600158	12A2p6	cell line	sgMsh2	41600158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	72	24	6	0.25	exonic	Jade1	nonsynonymous SNV	"Jade1:NM_001130184:exon7:c.T836C:p.V279A,Jade1:NM_001130185:exon7:c.T836C:p.V279A,Jade1:NM_001130186:exon7:c.T836C:p.V279A,Jade1:NM_172303:exon7:c.T836C:p.V279A"	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	45380829	12A2p6	cell line	sgMsh2	45380829	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.A1577T:p.Y526F,Pcdh10:NM_001098171:exon1:c.A1577T:p.Y526F,Pcdh10:NM_001098172:exon1:c.A1577T:p.Y526F,Pcdh10:NM_011043:exon1:c.A1577T:p.Y526F"	3qB	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997206	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	53653554	12A2p6	cell line	sgMsh2	53653554	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	178	0	0	NA	exonic	Frem2	synonymous SNV	Frem2:NM_172862:exon1:c.C3531T:p.D1177D	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	CGT	synonymous	NA	NA	NA	NA
M2	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	131	75	12	0.16	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9995165	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	107	121	29	0.239669421	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.748016693	1	0.5677556	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	54782447	12A2p6	cell line	sgMsh2	54782447	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	31	1	0	0	exonic	Smad9	synonymous SNV	Smad9:NM_019483:exon2:c.A87G:p.E29E	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9684548	AAG	synonymous	NA	NA	NA	NA
M2	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	152	116	25	0.215517241	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9999937	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	88	128	29	0.2265625	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9836213	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	57	6	2	0.333333333	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9958847	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M2	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	177	24	2	0.083333333	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	190	25	3	0.12	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999997	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr3	58415786	12A2p6	cell line	sgMsh2	58415786	T	C	SNV	Mutect2;Vardict	2	0.174	23	85	29	0.341176471	exonic	Tsc22d2	nonsynonymous SNV	"Tsc22d2:NM_001081229:exon1:c.T98C:p.L33P,Tsc22d2:NM_001347233:exon1:c.T98C:p.L33P"	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.731207329	1	0.7822333	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.336	77	225	6	0.026666667	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	142	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999917	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	59743796	12A2p6	cell line	sgMsh2	59743796	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	103	0	0	NA	exonic	Aadacl2fm2	nonsynonymous SNV	Aadacl2fm2:NM_001101531:exon2:c.G338T:p.G113V	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.256342799	3	0.9998149	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr3	59931664	12A2p6	cell line	sgMsh2	59931664	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	277	0	0	NA	exonic	Aadacl2fm1	synonymous SNV	Aadacl2fm1:NM_177661:exon4:c.A6T:p.S2S	3qD	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M2	chr3	62602613	12A2p6	cell line	sgMsh2	62602613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	86	0	0	NA	exonic	Gpr149	synonymous SNV	"Gpr149:NM_001356525:exon2:c.A1080G:p.P360P,Gpr149:NM_177346:exon2:c.A1080G:p.P360P"	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995743	CTG	synonymous	NA	NA	NA	NA
M2	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	36	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	64117207	12A2p6	cell line	sgMsh2	64117207	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	339	0	0	NA	exonic	Vmn2r2	nonsynonymous SNV	"Vmn2r2:NM_001104592:exon5:c.A1700C:p.D567A,Vmn2r2:NM_001385025:exon6:c.A1952C:p.D651A"	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.9857089	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	64137343	12A2p6	cell line	sgMsh2	64137343	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	306	0	0	NA	exonic	Vmn2r2	synonymous SNV	"Vmn2r2:NM_001104592:exon1:c.A129G:p.A43A,Vmn2r2:NM_001385025:exon2:c.A381G:p.A127A"	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.159688957	3	1	ATG	synonymous	NA	NA	NA	NA
M2	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	248	46	14	0.304347826	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9999902	CTG	synonymous	NA	NA	NA	NA
M2	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	81	26	4	0.153846154	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8527692	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Strelka2;Vardict	2	0.2237	76	256	1	0.00390625	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.940063675	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M2	chr3	69575621	12A2p6	cell line	sgMsh2	69575621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	140	16	8	0.5	exonic	B3galnt1	synonymous SNV	B3galnt1:NM_020026:exon3:c.T306C:p.G102G	3qE1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.65136285	2	0.9907397	CAC	synonymous	NA	NA	NA	NA
M2	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	239	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9999981	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr3	72922826	12A2p6	cell line	sgMsh2	72922826	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	118	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon28:c.C3391T:p.P1131S	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.999955	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr3	73639948	12A2p6	cell line	sgMsh2	73639948	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	104	14	4	0.285714286	exonic	Bche	nonsynonymous SNV	Bche:NM_009738:exon4:c.C1781T:p.T594I	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr3	79345523	12A2p6	cell line	sgMsh2	79345523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	257	0	0	NA	exonic	Gm17359	nonsynonymous SNV	"Gm17359:NM_001142953:exon1:c.A44G:p.K15R,Gm17359:NM_001370773:exon1:c.A44G:p.K15R"	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	4.67E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.219	84	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9954839	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	79705641	12A2p6	cell line	sgMsh2	79705641	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	37	0	0	NA	exonic	Rxfp1	synonymous SNV	Rxfp1:NM_212452:exon2:c.C121T:p.L41L	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9868797	AGG	synonymous	AGGC	9	AGGCAGGCA	NA
M2	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	171	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999989	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	81	2	0	0	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr3	82111192	12A2p6	cell line	sgMsh2	82111192	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	96	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon4:c.G337T:p.D113Y,Gucy1a1:NM_001356988:exon4:c.G337T:p.D113Y,Gucy1a1:NM_021896:exon4:c.G337T:p.D113Y"	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	145	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999932	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr3	83068264	12A2p6	cell line	sgMsh2	83068264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	169	117	28	0.239316239	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon10:c.A840G:p.I280M	3qE3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.999998	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	37	12	0.324324324	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9998427	AAT	synonymous	NA	NA	NA	NA
M2	chr3	84134043	12A2p6	cell line	sgMsh2	84134043	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	113	29	3	0.103448276	exonic	Mnd1	nonsynonymous SNV	Mnd1:NM_029797:exon4:c.G251A:p.R84H	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9987253	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	192	50	7	0.14	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M2	chr3	85652353	12A2p6	cell line	sgMsh2	85652353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	75	18	7	0.388888889	exonic	Gatb	nonsynonymous SNV	Gatb:NM_144896:exon12:c.A1483C:p.M495L	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9368451	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	165	24	11	0.458333333	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999983	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr3	87733275	12A2p6	cell line	sgMsh2	87733275	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	118	75	18	0.24	exonic	Arhgef11	synonymous SNV	"Arhgef11:NM_001360197:exon35:c.C1875A:p.P625P,Arhgef11:NM_001003912:exon36:c.C3825A:p.P1275P,Arhgef11:NM_001360195:exon36:c.C3738A:p.P1246P"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.999955	CCT	synonymous	NA	NA	NA	NA
M2	chr3	87931617	12A2p6	cell line	sgMsh2	87931617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	96	76	19	0.25	exonic	Isg20l2	nonsynonymous SNV	Isg20l2:NM_177663:exon2:c.A134G:p.Q45R	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.82365883	1	0.9445772	CAA	nonsynonymous	AACC	8	AACCAACC	NA
M2	chr3	88091546	12A2p6	cell line	sgMsh2	88091546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	50	3	0	0	exonic	Iqgap3	nonsynonymous SNV	Iqgap3:NM_001033484:exon10:c.A953G:p.D318G	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9703909	GAT	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M2	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	62	15	1	0.066666667	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	50	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9946923	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M2	chr3	89229153	12A2p6	cell line	sgMsh2	89229153	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	53	259	73	0.281853282	exonic	Muc1	synonymous SNV	Muc1:NM_013605:exon1:c.C34T:p.L12L	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.684981578	2	0.526564	GCT	synonymous	CTG	8	CTGCTGCT	NA
M2	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	62	93	14	0.150537634	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	105	44	7	0.159090909	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998878	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	89943330	12A2p6	cell line	sgMsh2	89943330	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	126	14	3	0.214285714	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon25:c.G3220T:p.G1074W,Atp8b2:NM_001081182:exon26:c.G3163T:p.G1055W"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	70	673	205	0.304606241	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9986917	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	203	72	32	0.444444444	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.821212	AGC	synonymous	NA	NA	NA	NA
M2	chr3	90129142	12A2p6	cell line	sgMsh2	90129142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	157	2	1	0.5	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon8:c.C1024T:p.L342F	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7132788	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	124	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	TCA	nonsynonymous	NA	NA	NA	NA
M2	chr3	90269041	12A2p6	cell line	sgMsh2	90269041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	52	3	1	0.333333333	exonic	Dennd4b	nonsynonymous SNV	"Dennd4b:NM_001356483:exon5:c.T694G:p.S232A,Dennd4b:NM_201407:exon5:c.T727G:p.S243A"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9953845	GTC	nonsynonymous	AGTC	8	AGTCAGTC	NA
M2	chr3	90388429	12A2p6	cell line	sgMsh2	90388429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	112	3	1	0.333333333	exonic	Slc27a3	nonsynonymous SNV	"Slc27a3:NM_001316688:exon3:c.A500G:p.Y167C,Slc27a3:NM_011988:exon3:c.A887G:p.Y296C"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999314	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	92288692	12A2p6	cell line	sgMsh2	92288692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	319	12	8	0.666666667	exonic	Sprr2a3	synonymous SNV	Sprr2a3:NM_001309382:exon2:c.T105C:p.P35P	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	1.03E-09	CTT	synonymous	NA	NA	NA	NA
M2	chr3	92408741	12A2p6	cell line	sgMsh2	92408741	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	183	0	0	NA	exonic	Sprr2i	nonsynonymous SNV	Sprr2i:NM_011475:exon2:c.A26G:p.K9R	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	248	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	5.88E-09	TAC	synonymous	NA	NA	NA	NA
M2	chr3	93444389	12A2p6	cell line	sgMsh2	93444389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	73	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A1135G:p.T379A	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9989399	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	244	175	40	0.228571429	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	7.47E-09	GTG	synonymous	NA	NA	NA	NA
M2	chr3	94639416	12A2p6	cell line	sgMsh2	94639416	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	185	25	2	0.08	exonic	Tuft1	nonsynonymous SNV	Tuft1:NM_011656:exon2:c.A114C:p.E38D	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	58	50	7	0.14	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	CTT	nonsynonymous	T	5	TTTTT	NA
M2	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	63	136	28	0.205882353	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.642958168	2	0.7910635	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	131	321	81	0.252336449	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9979129	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	95240774	12A2p6	cell line	sgMsh2	95240774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	38	1	0	0	exonic	Gm128	nonsynonymous SNV	Gm128:NM_001024841:exon1:c.C208A:p.L70M	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9531285	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	193	152	42	0.276315789	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	198	155	48	0.309677419	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	103	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9991671	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	95	55	18	0.327272727	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	96190686	12A2p6	cell line	sgMsh2	96190686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	1	0	0	exonic	Sv2a	nonsynonymous SNV	Sv2a:NM_022030:exon10:c.A1604G:p.Y535C	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9980069	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	18	0	0	NA	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.874086922	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr3	96643594	12A2p6	cell line	sgMsh2	96643594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	40	14	0.35	exonic	Pex11b	nonsynonymous SNV	"Pex11b:NM_001162387:exon4:c.A394G:p.I132V,Pex11b:NM_001162388:exon4:c.A352G:p.I118V,Pex11b:NM_011069:exon4:c.A394G:p.I132V"	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9866176	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	122	1	1	1	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9998886	AAG	synonymous	NA	NA	NA	NA
M2	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	121	6	1	0.166666667	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9987402	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	147	7	1	0.142857143	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	AGT	synonymous	NA	NA	NA	NA
M2	chr3	97767541	12A2p6	cell line	sgMsh2	97767541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	85	61	16	0.262295082	exonic	Pde4dip	nonsynonymous SNV	Pde4dip:NM_178080:exon1:c.A58G:p.I20V	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9781409	CTT	synonymous	NA	NA	NA	NA
M2	chr3	100065527	12A2p6	cell line	sgMsh2	100065527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon28:c.C4054T:p.H1352Y	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	CCA	nonsynonymous	C	5	CCCCC	NA
M2	chr3	100075859	12A2p6	cell line	sgMsh2	100075859	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	190	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon30:c.G4474A:p.D1492N	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.710195624	2	0.9623319	TGA	nonsynonymous	NA	NA	NA	NA
M2	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.848872876	1	0.974923	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	13	4	0.307692308	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9945843	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	304	200	50	0.25	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	1.10E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	36	15	6	0.4	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9643079	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	104015286	12A2p6	cell line	sgMsh2	104015286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	204	68	15	0.220588235	exonic	Magi3	nonsynonymous SNV	Magi3:NM_001159354:exon21:c.A4114G:p.T1372A	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9998681	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	104020372	12A2p6	cell line	sgMsh2	104020372	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	58	94	16	0.170212766	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon19:c.G3098T:p.G1033V,Magi3:NM_133853:exon19:c.G3098T:p.G1033V"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9969666	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr3	104804572	12A2p6	cell line	sgMsh2	104804572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	92	73	11	0.150684932	exonic	Mov10	synonymous SNV	"Mov10:NM_008619:exon3:c.A483G:p.K161K,Mov10:NM_001163440:exon4:c.A702G:p.K234K,Mov10:NM_001163441:exon4:c.A483G:p.K161K"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9995912	GTT	synonymous	NA	NA	NA	NA
M2	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	71	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	GGA	synonymous	NA	NA	NA	NA
M2	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	101	100	24	0.24	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9998515	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	221	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999939	CTG	nonsynonymous	C	5	CCCCC	NA
M2	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	98	3	1	0.333333333	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9987612	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	156	27	6	0.222222222	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999969	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr3	106821674	12A2p6	cell line	sgMsh2	106821674	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	171	2	0	0	exonic	Olfr266	nonsynonymous SNV	Olfr266:NM_146489:exon1:c.T884C:p.L295P	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.184903003	3	1.17E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	102	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	GCT	synonymous	NA	NA	NA	NA
M2	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.1176	119	5	0	0	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.494195298	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M2	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	60	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9891606	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	107616882	12A2p6	cell line	sgMsh2	107616882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	77	64	15	0.234375	exonic	Strip1	nonsynonymous SNV	Strip1:NM_153563:exon16:c.T1718C:p.V573A	3qF2.3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.731207329	1	6.28E-08	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	162	2	1	0.5	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.999998	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	23	5	0	0	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.727004988	1	0.000790788	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	108393194	12A2p6	cell line	sgMsh2	108393194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	24	4	1	0.25	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.T8549C:p.L2850P,Celsr2:NM_017392:exon33:c.T8549C:p.L2850P"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9679362	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	91	8	1	0.125	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	CTG	synonymous	NA	NA	NA	NA
M2	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	103	12	2	0.166666667	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9853993	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	67	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9715004	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	108889692	12A2p6	cell line	sgMsh2	108889692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	97	0	0	NA	exonic	Fndc7	synonymous SNV	"Fndc7:NM_001165965:exon1:c.T15C:p.P5P,Fndc7:NM_177091:exon1:c.T15C:p.P5P"	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9993377	CAG	synonymous	NA	NA	NA	NA
M2	chr3	113249237	12A2p6	cell line	sgMsh2	113249237	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.302	61	0	0	NA	exonic	Amy2a5	nonsynonymous SNV	Amy2a5:NM_001042711:exon10:c.G1501A:p.A501T	3qF3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	99	317	83	0.261829653	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.647160509	2	0.9497038	CCT	synonymous	NA	NA	NA	NA
M2	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	44	37	4	0.108108108	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.668172214	2	0.5103512	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	143	4	1	0.25	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999922	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	142	46	7	0.152173913	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9996411	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	116891944	12A2p6	cell line	sgMsh2	116891944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	156	89	38	0.426966292	exonic	Frrs1	synonymous SNV	"Frrs1:NM_001113478:exon9:c.T963C:p.N321N,Frrs1:NM_009146:exon9:c.T963C:p.N321N"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999969	ATG	synonymous	NA	NA	NA	NA
M2	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	152	61	18	0.295081967	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9987339	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	118797421	12A2p6	cell line	sgMsh2	118797421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	93	0	0	NA	exonic	Dpyd	nonsynonymous SNV	Dpyd:NM_170778:exon6:c.A557G:p.Y186C	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.917676	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	122014355	12A2p6	cell line	sgMsh2	122014355	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	199	18	5	0.277777778	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon23:c.C3181A:p.P1061T,Arhgap29:NM_172525:exon23:c.C3181A:p.P1061T"	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999989	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	146	2	0	0	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9999827	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	130	4	2	0.5	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999806	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	124578524	12A2p6	cell line	sgMsh2	124578524	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	0	0	NA	exonic	1700003H04Rik	synonymous SNV	1700003H04Rik:NM_001368235:exon3:c.C210T:p.D70D	3qG1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9998616	AGT	synonymous	NA	NA	NA	NA
M2	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	154	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999964	CGA	synonymous	NA	NA	NA	NA
M2	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Strelka2;Vardict	2	0.2283	92	56	2	0.035714286	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.959394443	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	157	3	1	0.333333333	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999971	CAC	synonymous	NA	NA	NA	NA
M2	chr3	129830733	12A2p6	cell line	sgMsh2	129830733	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	35	10	3	0.3	exonic	Gar1	nonsynonymous SNV	Gar1:NM_026578:exon2:c.G109A:p.G37S	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9849311	CCG	nonsynonymous	GCC	21	GCCGCCGCCGCCTCCGCCGCC	NA
M2	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	167	15	0	0	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999986	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	129874332	12A2p6	cell line	sgMsh2	129874332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	144	11	6	0.545454545	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon13:c.A1533G:p.I511M,Cfi:NM_007686:exon13:c.A1536G:p.I512M"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	103	4	0	0	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9990384	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	176	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999992	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	110	142	26	0.183098592	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.999921	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr3	131605851	12A2p6	cell line	sgMsh2	131605851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	110	189	32	0.169312169	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon8:c.T902G:p.V301G,Papss1:NM_001289477:exon9:c.T839G:p.V280G,Papss1:NM_001289478:exon9:c.T839G:p.V280G,Papss1:NM_001289479:exon10:c.T695G:p.V232G"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7602569	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr3	132086094	12A2p6	cell line	sgMsh2	132086094	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon1:c.T62G:p.L21R	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9787272	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	145	355	85	0.23943662	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999932	ATG	synonymous	NA	NA	NA	NA
M2	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	88	16	5	0.3125	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.99963	TAC	synonymous	NA	NA	NA	NA
M2	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	123	107	0	0	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999683	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	114	192	44	0.229166667	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999404	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	177	502	115	0.229083665	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	AAA	nonsynonymous	A	5	AAAAA	NA
M2	chr3	138550967	12A2p6	cell line	sgMsh2	138550967	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	150	265	70	0.264150943	exonic	Eif4e	synonymous SNV	"Eif4e:NM_001313980:exon6:c.G105A:p.Q35Q,Eif4e:NM_007917:exon6:c.G360A:p.Q120Q"	3qG3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9999416	AGC	synonymous	AGC	8	AGCAGCAG	NA
M2	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	127	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	CTC	synonymous	NA	NA	NA	NA
M2	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	215	26	3	0.115384615	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	5.06E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	309	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	8.65E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	115	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999444	GTT	synonymous	NA	NA	NA	NA
M2	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	84	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8529287	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	146904174	12A2p6	cell line	sgMsh2	146904174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	95	94	23	0.244680851	exonic	Ttll7	nonsynonymous SNV	"Ttll7:NM_001302957:exon7:c.T647C:p.L216S,Ttll7:NM_001302958:exon7:c.T647C:p.L216S,Ttll7:NM_001357217:exon7:c.T647C:p.L216S"	3qH2	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.82365883	1	0.9439668	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr3	153867772	12A2p6	cell line	sgMsh2	153867772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	91	0	0	NA	exonic	Msh4	synonymous SNV	"Msh4:NM_031870:exon16:c.T2244C:p.D748D,Msh4:NM_001282054:exon17:c.T1662C:p.D554D"	3qH3	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	CAT	synonymous	ATC	10	ATCATCATCA	NA
M2	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	72	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	CCA	synonymous	C	5	CCCCC	NA
M2	chr3	154261327	12A2p6	cell line	sgMsh2	154261327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	126	0	0	NA	exonic	Slc44a5	nonsynonymous SNV	Slc44a5:NM_001081263:exon17:c.A1649G:p.Q550R	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	372	108	25	0.231481481	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	134	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9930451	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	56	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9959342	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	154939727	12A2p6	cell line	sgMsh2	154939727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	142	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon16:c.G1520A:p.R507Q	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999917	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	188	44	5	0.113636364	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9929907	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	149	23	7	0.304347826	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-156562642	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.9175685	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	94	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-156859184-159913826	3	2	1	0.99	4.160317559	NA	1	1	1	0.9997572	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	106	146	41	0.280821918	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-156859184-159913826	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998954	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr4	3585720	12A2p6	cell line	sgMsh2	3585720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	117	63	20	0.317460317	exonic	Tgs1	nonsynonymous SNV	Tgs1:NM_054089:exon4:c.A596G:p.Y199C	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999517	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	3903963	12A2p6	cell line	sgMsh2	3903963	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	114	2	1	0.5	exonic	Plag1	synonymous SNV	Plag1:NM_019969:exon6:c.C1227T:p.P409P	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999404	GGG	synonymous	G	5	GGGGG	NA
M2	chr4	4058878	12A2p6	cell line	sgMsh2	4058878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	130	0	0	NA	exonic	Sdr16c6	nonsynonymous SNV	Sdr16c6:NM_001080710:exon6:c.T707C:p.L236P	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999806	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	8752335	12A2p6	cell line	sgMsh2	8752335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	51	7	1	0.142857143	exonic	Chd7	synonymous SNV	Chd7:NM_001277149:exon2:c.G831A:p.G277G	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9950504	GGG	synonymous	NA	NA	NA	NA
M2	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	63	123	47	0.382113821	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.9978629	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	144	107	51	0.476635514	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999927	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	13859933	12A2p6	cell line	sgMsh2	13859933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	59	0	0	NA	exonic	Runx1t1	nonsynonymous SNV	"Runx1t1:NM_001111026:exon6:c.G803A:p.G268D,Runx1t1:NM_009822:exon6:c.G782A:p.G261D,Runx1t1:NM_001111027:exon7:c.G863A:p.G288D"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9971718	GGC	nonsynonymous	GCCT	8	GCCTGCCT	NA
M2	chr4	13859936	12A2p6	cell line	sgMsh2	13859936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	59	0	0	NA	exonic	Runx1t1	nonsynonymous SNV	"Runx1t1:NM_001111026:exon6:c.T806C:p.L269P,Runx1t1:NM_009822:exon6:c.T785C:p.L262P,Runx1t1:NM_001111027:exon7:c.T866C:p.L289P"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9971718	CTG	nonsynonymous	GCCT	8	GCCTGCCT	NA
M2	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.99595481	1	0.9999599	AAG	synonymous	NA	NA	NA	NA
M2	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.735	89	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.9996551	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	69	45	11	0.244444444	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9985967	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	105	159	39	0.245283019	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998878	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	140	23	7	0.304347826	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999904	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	21931577	12A2p6	cell line	sgMsh2	21931577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	2	1	0.5	exonic	Faxc	nonsynonymous SNV	Faxc:NM_175234:exon1:c.T14C:p.V5A	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	9.94E-06	GTT	nonsynonymous	G	6	GGGGGG	NA
M2	chr4	22390800	12A2p6	cell line	sgMsh2	22390800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	30	39	8	0.205128205	exonic	Fbxl4	nonsynonymous SNV	Fbxl4:NM_172988:exon5:c.T982C:p.Y328H	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.920312672	1	0.9540898	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr4	22486922	12A2p6	cell line	sgMsh2	22486922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	31	0	0	NA	exonic	Pou3f2	nonsynonymous SNV	Pou3f2:NM_008899:exon1:c.T1210C:p.F404L	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9801412	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	25250558	12A2p6	cell line	sgMsh2	25250558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	118	46	26	0.565217391	exonic	Ufl1	nonsynonymous SNV	"Ufl1:NM_001355512:exon19:c.A2294G:p.N765S,Ufl1:NM_026194:exon19:c.A2294G:p.N765S"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.999955	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	32644659	12A2p6	cell line	sgMsh2	32644659	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	77	34	8	0.235294118	exonic	Casp8ap2	nonsynonymous SNV	"Casp8ap2:NM_001122978:exon8:c.C3731A:p.P1244H,Casp8ap2:NM_011997:exon8:c.C3731A:p.P1244H"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9991993	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr4	32726846	12A2p6	cell line	sgMsh2	32726846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	25	4	0.16	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon52:c.G7904A:p.R2635Q	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999832	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	122	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.999966	TTA	synonymous	NA	NA	NA	NA
M2	chr4	34049954	12A2p6	cell line	sgMsh2	34049954	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.556	7	0	0	NA	exonic	Spaca1	nonsynonymous SNV	"Spaca1:NM_001290443:exon1:c.G43A:p.V15I,Spaca1:NM_026293:exon1:c.G43A:p.V15I"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.09831571	ACG	nonsynonymous	NA	NA	NA	NA
M2	chr4	34575043	12A2p6	cell line	sgMsh2	34575043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	57	76	30	0.394736842	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon17:c.T1840C:p.Y614H,Orc3:NM_015824:exon17:c.T1843C:p.Y615H"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9967467	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	34806979	12A2p6	cell line	sgMsh2	34806979	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	82	75	20	0.266666667	exonic	Zfp292	frameshift deletion	Zfp292:NM_013889:exon8:c.6079delA:p.S2027Vfs*25	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M2	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	110	56	14	0.25	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.999921	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	102	31	8	0.258064516	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998615	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	39451094	12A2p6	cell line	sgMsh2	39451094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	79	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A299G:p.N100S	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9993042	AAT	nonsynonymous	A	5	AAAAA	NA
M2	chr4	40691057	12A2p6	cell line	sgMsh2	40691057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	35	17	0.485714286	exonic	Aptx	nonsynonymous SNV	"Aptx:NM_001025444:exon6:c.C661A:p.H221N,Aptx:NM_001025445:exon6:c.C484A:p.H162N,Aptx:NM_025545:exon6:c.C682A:p.H228N"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9978629	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.974943105	1	0.9998552	TAC	synonymous	NA	NA	NA	NA
M2	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	63	75	13	0.173333333	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2	chr4	42972413	12A2p6	cell line	sgMsh2	42972413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	67	0	0	NA	exonic	1700022I11Rik	nonsynonymous SNV	1700022I11Rik:NM_026088:exon2:c.A1745G:p.Q582R	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9983854	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr4	43443856	12A2p6	cell line	sgMsh2	43443856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	38	44	9	0.204545455	exonic	Tesk1	nonsynonymous SNV	Tesk1:NM_011571:exon2:c.T278C:p.L93P	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.697588601	1	0.6387471	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	105	8	1	0.125	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998878	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr4	45044856	12A2p6	cell line	sgMsh2	45044856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	50	8	0	0	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378819:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378820:exon7:c.G1217A:p.R406H,Fbxo10:NM_001378821:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378822:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378823:exon7:c.G1217A:p.R406H"	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9946923	ACG	nonsynonymous	NA	NA	NA	NA
M2	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.372	190	45	3	0.066666667	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr4	47030747	12A2p6	cell line	sgMsh2	47030747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	18	0	0	NA	exonic	Anks6	nonsynonymous SNV	"Anks6:NM_001024136:exon10:c.G1849T:p.A617S,Anks6:NM_001356426:exon11:c.G2053T:p.A685S"	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9519236	GCT	nonsynonymous	TGGC	13	GCTGGTGGCTGGC	NA
M2	chr4	52451316	12A2p6	cell line	sgMsh2	52451316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	78	47	13	0.276595745	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon9:c.A959G:p.K320R,Smc2:NM_008017:exon9:c.A959G:p.K320R"	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9992536	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M2	chr4	53038160	12A2p6	cell line	sgMsh2	53038160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	76	3	0	0	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon46:c.T6201G:p.F2067L	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9991411	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	5	1	0.2	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9956962	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	100	5	1	0.2	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998407	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	56806063	12A2p6	cell line	sgMsh2	56806063	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	62	49	13	0.265306122	exonic	Abitram	synonymous SNV	Abitram:NM_001081420:exon6:c.A474G:p.V158V	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.987550128	1	0.9970392	TAT	synonymous	NA	NA	NA	NA
M2	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	41	32	7	0.21875	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.928717354	1	0.9741611	CTC	synonymous	NA	NA	NA	NA
M2	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	169	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999987	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	58002408	12A2p6	cell line	sgMsh2	58002408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	82	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon3:c.T181G:p.S61A	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.773230738	1	0.7856146	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	58373527	12A2p6	cell line	sgMsh2	58373527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	74	0	0	NA	exonic	Musk	synonymous SNV	"Musk:NM_001037130:exon13:c.C2397T:p.H799H,Musk:NM_001037129:exon14:c.C2427T:p.H809H,Musk:NM_010944:exon14:c.C2421T:p.H807H,Musk:NM_001037128:exon15:c.C2451T:p.H817H,Musk:NM_001037127:exon16:c.C2496T:p.H832H"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9990118	ACG	synonymous	NA	NA	NA	NA
M2	chr4	58785009	12A2p6	cell line	sgMsh2	58785009	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	122	0	0	NA	exonic	Olfr267	frameshift deletion	Olfr267:NM_146920:exon1:c.712delT:p.S238Qfs*6	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr4	58785683	12A2p6	cell line	sgMsh2	58785683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.382	70	0	0	NA	exonic	Olfr267	frameshift deletion	Olfr267:NM_146920:exon1:c.38delT:p.F13Sfs*1	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	61	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9975414	GTG	synonymous	NA	NA	NA	NA
M2	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	136	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999873	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	60137009	12A2p6	cell line	sgMsh2	60137009	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	29	0	0	NA	exonic	Mup2	stopgain	"Mup2:NM_001286096:exon5:c.C346T:p.Q116X,Mup2:NM_001045550:exon6:c.C529T:p.Q177X,Mup2:NM_008647:exon6:c.C529T:p.Q177X"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9772149	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr4	62386110	12A2p6	cell line	sgMsh2	62386110	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	134	137	5	0.03649635	exonic	Slc31a1	nonsynonymous SNV	Slc31a1:NM_175090:exon3:c.A167G:p.D56G	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.243735776	3	0.9999967	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	63079966	12A2p6	cell line	sgMsh2	63079966	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	51	26	11	0.423076923	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon3:c.C204T:p.D68D,Zfp618:NM_001369114:exon3:c.C204T:p.D68D,Zfp618:NM_001369115:exon3:c.C36T:p.D12D,Zfp618:NM_001369119:exon3:c.C36T:p.D12D,Zfp618:NM_028326:exon3:c.C204T:p.D68D,Zfp618:NM_028327:exon3:c.C204T:p.D68D,Zfp618:NM_001369116:exon4:c.C36T:p.D12D,Zfp618:NM_001369117:exon4:c.C36T:p.D12D,Zfp618:NM_001369118:exon4:c.C36T:p.D12D"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.924515013	1	0.9824277	ACG	synonymous	NA	NA	NA	NA
M2	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	44	18	5	0.277777778	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9919335	CCT	synonymous	NA	NA	NA	NA
M2	chr4	63346071	12A2p6	cell line	sgMsh2	63346071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	196	0	0	NA	exonic	Orm1	nonsynonymous SNV	Orm1:NM_008768:exon4:c.A363G:p.I121M	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999998	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	65261885	12A2p6	cell line	sgMsh2	65261885	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	42	0	0	NA	exonic	Pappa	synonymous SNV	Pappa:NM_021362:exon10:c.G2982A:p.G994G	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9907285	GGA	synonymous	GATGGG	12	GATGGGGATGGG	NA
M2	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	46	30	7	0.233333333	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.992983	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr4	65614741	12A2p6	cell line	sgMsh2	65614741	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	85	40	15	0.375	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.C1534A:p.L512I,Trim32:NM_053084:exon2:c.C1534A:p.L512I"	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9995433	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	60	15	3	0.2	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.997363	CTA	synonymous	NA	NA	NA	NA
M2	chr4	74311729	12A2p6	cell line	sgMsh2	74311729	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	133	38	12	0.315789474	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon6:c.G537T:p.K179N,Kdm4c:NM_001172095:exon7:c.G813T:p.K271N,Kdm4c:NM_144787:exon7:c.G762T:p.K254N"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999843	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	120	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999609	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	81385176	12A2p6	cell line	sgMsh2	81385176	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	102	12	4	0.333333333	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305284:exon5:c.G524A:p.S175N,Mpdz:NM_001305286:exon5:c.G524A:p.S175N,Mpdz:NM_010820:exon5:c.G524A:p.S175N"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998615	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	108	4	2	0.5	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999091	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	54	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9959869	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr4	86232625	12A2p6	cell line	sgMsh2	86232625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	97	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon9:c.A1019G:p.Y340C,Adamtsl1:NM_029967:exon9:c.A1019G:p.Y340C"	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998033	TAC	nonsynonymous	ACT	8	ACTACTAC	NA
M2	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	61	119	41	0.344537815	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9975414	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr4	86874542	12A2p6	cell line	sgMsh2	86874542	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.59	31	0	0	NA	exonic	Acer2	nonsynonymous SNV	"Acer2:NM_001290541:exon1:c.T54A:p.D18E,Acer2:NM_001290543:exon1:c.T54A:p.D18E,Acer2:NM_139306:exon1:c.T54A:p.D18E"	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.9801412	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	1	1	1	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	9.94E-06	GTC	synonymous	NA	NA	NA	NA
M2	chr4	95844162	12A2p6	cell line	sgMsh2	95844162	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	55	4	1	0.25	exonic	Fggy	synonymous SNV	Fggy:NM_001113412:exon13:c.G1389C:p.P463P	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.996258	CGC	synonymous	T	5	TTTTT	NA
M2	chr4	98041653	12A2p6	cell line	sgMsh2	98041653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	67	57	18	0.315789474	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon7:c.A1118G:p.H373R,Nfia:NM_010905:exon7:c.A1049G:p.H350R"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9983854	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	56	19	0.339285714	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9993953	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	98771474	12A2p6	cell line	sgMsh2	98771474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	45	0	0	NA	exonic	Kank4	nonsynonymous SNV	Kank4:NM_172872:exon7:c.G2366T:p.R789M	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.974943105	1	0.9890923	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	138	71	20	0.281690141	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999889	CGA	synonymous	NA	NA	NA	NA
M2	chr4	100441716	12A2p6	cell line	sgMsh2	100441716	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	81	2	0	0	exonic	Ror1	nonsynonymous SNV	Ror1:NM_013845:exon9:c.C2285T:p.S762L	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9993953	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	109	35	12	0.342857143	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999153	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M2	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	88	45	12	0.266666667	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.99963	CTG	synonymous	NA	NA	NA	NA
M2	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	95	96	34	0.354166667	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9997737	TAG	synonymous	GTA	8	GTAGTAGT	NA
M2	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	100	6	2	0.333333333	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998407	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	147	100	48	0.48	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999941	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr4	109238966	12A2p6	cell line	sgMsh2	109238966	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	38	0	0	NA	exonic	Calr4	nonsynonymous SNV	"Calr4:NM_001033226:exon2:c.T340C:p.Y114H,Calr4:NM_001285895:exon3:c.T397C:p.Y133H,Calr4:NM_001285896:exon3:c.T19C:p.Y7H,Calr4:NM_001285897:exon3:c.T19C:p.Y7H,Calr4:NM_001285898:exon3:c.T19C:p.Y7H"	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9877585	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	97	118	42	0.355932203	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998033	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	121	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999635	GCT	synonymous	NA	NA	NA	NA
M2	chr4	113477952	12A2p6	cell line	sgMsh2	113477952	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	66	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon58:c.G4319A:p.G1440D,Skint5:NM_001167876:exon59:c.G4382A:p.G1461D"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.844670535	1	0.9502052	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	113623739	12A2p6	cell line	sgMsh2	113623739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	181	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon38:c.A2874G:p.K958K,Skint5:NM_001167878:exon38:c.A2874G:p.K958K"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999995	CTT	synonymous	T	5	TTTTT	NA
M2	chr4	113940842	12A2p6	cell line	sgMsh2	113940842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	254	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon4:c.T501C:p.G167G,Skint5:NM_001167878:exon4:c.T501C:p.G167G"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	4.20E-09	AAC	synonymous	AACC	8	AACCAACC	NA
M2	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	69	15	2	0.133333333	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9985967	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	15	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	163	6	1	0.166666667	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	117044583	12A2p6	cell line	sgMsh2	117044583	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	93	51	0	0	exonic	Eif2b3	frameshift deletion	"Eif2b3:NM_001111277:exon4:c.442delA:p.K150Nfs*57,Eif2b3:NM_175135:exon4:c.442delA:p.K150Nfs*57"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M2	chr4	117273115	12A2p6	cell line	sgMsh2	117273115	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	81	39	4	0.102564103	exonic	Rnf220	nonsynonymous SNV	"Rnf220:NM_001310730:exon10:c.A793G:p.M265V,Rnf220:NM_001310731:exon10:c.A604G:p.M202V,Rnf220:NM_001310729:exon13:c.A928G:p.M310V,Rnf220:NM_025739:exon14:c.A1567G:p.M523V"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.264747481	3	0.9976515	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr4	117914336	12A2p6	cell line	sgMsh2	117914336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	37	13	3	0.230769231	exonic	Ipo13	synonymous SNV	Ipo13:NM_146152:exon1:c.G36A:p.G12G	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9868797	CCC	synonymous	NA	NA	NA	NA
M2	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	47	46	14	0.304347826	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9934558	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M2	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	93	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9997395	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	21	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9607086	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr4	120547338	12A2p6	cell line	sgMsh2	120547338	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	152	112	2	0.017857143	exonic	Ctps	nonsynonymous SNV	"Ctps:NM_001355491:exon12:c.T1220C:p.V407A,Ctps:NM_016748:exon12:c.T1220C:p.V407A"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.180700662	3	2.65E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	44	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9919335	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	121044695	12A2p6	cell line	sgMsh2	121044695	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.462	71	0	0	NA	exonic	Col9a2	frameshift deletion	Col9a2:NM_007741:exon9:c.445delC:p.P150Qfs*31	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2	chr4	121109149	12A2p6	cell line	sgMsh2	121109149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	116	0	0	NA	exonic	Tmco2	synonymous SNV	Tmco2:NM_001081312:exon1:c.A9G:p.T3T	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999482	ATG	synonymous	NA	NA	NA	NA
M2	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	183	73	31	0.424657534	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999995	ATT	synonymous	NA	NA	NA	NA
M2	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	136	161	48	0.298136646	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999873	CAG	synonymous	GT	8	GTGTGTGT	NA
M2	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	72	16	7	0.4375	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9988629	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	120	135	41	0.303703704	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999609	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	69	8	1	0.125	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9985967	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	94	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9997572	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	53	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9956962	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	97	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9998033	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr4	126043463	12A2p6	cell line	sgMsh2	126043463	C	T	SNV	Mutect2;Vardict	2	0.059	92	0	0	NA	exonic	Csf3r	synonymous SNV	"Csf3r:NM_001252651:exon15:c.C1815T:p.S605S,Csf3r:NM_007782:exon17:c.C2139T:p.S713S"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.247938117	3	0.9996607	CCG	synonymous	NA	NA	NA	NA
M2	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	118	42	0.355932203	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9983854	TAG	synonymous	NA	NA	NA	NA
M2	chr4	126151857	12A2p6	cell line	sgMsh2	126151857	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	48	5	4	0.8	exonic	Sh3d21	nonsynonymous SNV	"Sh3d21:NM_025856:exon10:c.G680A:p.S227N,Sh3d21:NM_001162533:exon14:c.G1028A:p.S343N"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9938968	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr4	126316682	12A2p6	cell line	sgMsh2	126316682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	41	9	0.219512195	exonic	Adprhl2	nonsynonymous SNV	Adprhl2:NM_133883:exon6:c.A1004G:p.Y335C	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9985967	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	126371529	12A2p6	cell line	sgMsh2	126371529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	59	15	6	0.4	exonic	Ago3	nonsynonymous SNV	Ago3:NM_153402:exon8:c.A968G:p.Y323C	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9971718	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	128260354	12A2p6	cell line	sgMsh2	128260354	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.298	90	0	0	NA	exonic	Hmgb4	frameshift insertion	Hmgb4:NM_027036:exon1:c.419dupA:p.P141Afs*2	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	GCT	frameshift	T	5	TTTTT	1
M2	chr4	128480819	12A2p6	cell line	sgMsh2	128480819	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	70	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon39:c.A6011T:p.Y2004F	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9986917	TAC	nonsynonymous	C	5	CCCCC	NA
M2	chr4	128616823	12A2p6	cell line	sgMsh2	128616823	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	28	0	0	NA	exonic	Tlr12	nonsynonymous SNV	Tlr12:NM_205823:exon1:c.T1633G:p.L545V	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9755977	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	24	1	0	0	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9679362	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9913518	CAT	synonymous	NA	NA	NA	NA
M2	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	83	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.9994745	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr4	129534642	12A2p6	cell line	sgMsh2	129534642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	157	9	3	0.333333333	exonic	Hdac1	nonsynonymous SNV	Hdac1:NM_008228:exon2:c.A134G:p.Y45C	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999971	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.404	62	17	5	0.294117647	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2	chr4	132314255	12A2p6	cell line	sgMsh2	132314255	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	62	126	11	0.087301587	exonic	Trnau1ap	nonsynonymous SNV	Trnau1ap:NM_027925:exon7:c.A643C:p.S215R	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.285759186	3	0.9713623	CTG	nonsynonymous	GTAGCT	19	GTAGCTGTAGCTGTAGCTG	NA
M2	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	131	30	12	0.4	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999819	TTC	synonymous	NA	NA	NA	NA
M2	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	23	20	6	0.3	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9656829	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	32	9	0.28125	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.86568224	1	0.9870074	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	134091189	12A2p6	cell line	sgMsh2	134091189	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.424	34	3	2	0.666666667	exonic	Crybg2	frameshift deletion	Crybg2:NM_001162970:exon18:c.4255delG:p.G1420Afs*11	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr4	134228347	12A2p6	cell line	sgMsh2	134228347	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	33	4	1	0.25	exonic	Cnksr1	nonsynonymous SNV	Cnksr1:NM_001081047:exon21:c.C2071A:p.P691T	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9826982	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	56	22	10	0.454545455	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9965109	ATG	synonymous	NA	NA	NA	NA
M2	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	43	1	1	1	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9913518	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	38	365	118	0.323287671	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.895098626	1	0.9554439	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	135967358	12A2p6	cell line	sgMsh2	135967358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	38	94	0	0	exonic	Gale	frameshift deletion	Gale:NM_001356493:exon9:c.799delA:p.N267Tfs*165	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	84	142	11	0.077464789	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9995101	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	67	104	41	0.394230769	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9983854	CTG	synonymous	NA	NA	NA	NA
M2	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	40	43	15	0.348837209	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9893454	CGG	nonsynonymous	NA	NA	NA	NA
M2	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	14	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9372259	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	41	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	55	11	3	0.272727273	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.466459848	2	0.9374305	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	75	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9990787	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	140994030	12A2p6	cell line	sgMsh2	140994030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	44	35	5	0.142857143	exonic	Atp13a2	nonsynonymous SNV	"Atp13a2:NM_001164366:exon5:c.G430A:p.D144N,Atp13a2:NM_001379619:exon5:c.G430A:p.D144N,Atp13a2:NM_001379620:exon5:c.G430A:p.D144N,Atp13a2:NM_001379621:exon5:c.G430A:p.D144N,Atp13a2:NM_001379622:exon5:c.G430A:p.D144N,Atp13a2:NM_029097:exon5:c.G430A:p.D144N"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9919335	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	54	949	344	0.362486828	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9959869	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	29	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	2	1	1	0.9772149	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	141642409	12A2p6	cell line	sgMsh2	141642409	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	36	8	4	0.5	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon3:c.C274A:p.R92R,Plekhm2:NM_001347237:exon3:c.C274A:p.R92R"	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.794242443	1	0.8566375	CGC	synonymous	NA	NA	NA	NA
M2	chr4	143132855	12A2p6	cell line	sgMsh2	143132855	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	125	97	28	0.288659794	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.C3864A:p.S1288R,Prdm2:NM_001256380:exon8:c.C3864A:p.S1288R"	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999725	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr4	143697345	12A2p6	cell line	sgMsh2	143697345	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.287	201	0	0	NA	exonic	Pramel23	synonymous SNV	Pramel23:NM_001356572:exon4:c.C873A:p.T291T	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999999	AGG	synonymous	NA	NA	NA	NA
M2	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	165	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999983	CCT	synonymous	NA	NA	NA	NA
M2	chr4	143852045	12A2p6	cell line	sgMsh2	143852045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	174	0	0	NA	exonic	Pramel27	nonsynonymous SNV	Pramel27:NM_177571:exon3:c.T874C:p.Y292H	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999991	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	144159497	12A2p6	cell line	sgMsh2	144159497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	203	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.G530A:p.G177D	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	144159524	12A2p6	cell line	sgMsh2	144159524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	205	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.T503C:p.V168A	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr4	148156407	12A2p6	cell line	sgMsh2	148156407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	29	2	1	0.5	exonic	Fbxo44	nonsynonymous SNV	"Fbxo44:NM_001161851:exon4:c.A476G:p.E159G,Fbxo44:NM_001355701:exon4:c.A476G:p.E159G,Fbxo44:NM_173401:exon4:c.A476G:p.E159G,Fbxo44:NM_001355702:exon5:c.A248G:p.E83G"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9772149	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	46	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.992983	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr4	151143934	12A2p6	cell line	sgMsh2	151143934	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	35	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.G2440T:p.A814S	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9849311	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	53	13	3	0.230769231	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9956962	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr4	152271532	12A2p6	cell line	sgMsh2	152271532	T	C	SNV	Mutect2;Vardict	2	0.124	36	290	99	0.34137931	exonic	Acot7	stoploss	Acot7:NM_001369274:exon9:c.T973C:p.X325R	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	0.52109028	2	0.7971009	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	48	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9938968	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	1	0	0	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9988629	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	137	27	8	0.296296296	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9999881	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr4	155815284	12A2p6	cell line	sgMsh2	155815284	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	62	112	49	0.4375	exonic	Ccnl2	nonsynonymous SNV	Ccnl2:NM_207678:exon4:c.T509G:p.L170R	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9977078	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	78	31	9	0.290322581	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9992536	CAA	synonymous	NA	NA	NA	NA
M2	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	92	12	4	0.333333333	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.160317559	NA	1	1	1	0.9997206	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.712	165	20	14	0.7	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9999983	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	140	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999904	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.619	42	70	45	0.642857143	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9907285	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	29	18	3	0.166666667	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9772149	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr5	4757292	12A2p6	cell line	sgMsh2	4757292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	60	6	0	0	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.T289C:p.Y97H	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.997363	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	117	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999517	CTT	synonymous	NA	NA	NA	NA
M2	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	75	173	46	0.265895954	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.785837761	1	0.8387787	CTG	synonymous	NA	NA	NA	NA
M2	chr5	13451191	12A2p6	cell line	sgMsh2	13451191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	133	15	4	0.266666667	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon2:c.G200A:p.S67N,Sema3a:NM_001243072:exon3:c.G200A:p.S67N,Sema3a:NM_001243073:exon3:c.G200A:p.S67N"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.9539314	1	0.9998796	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	111	1	0	0	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.962336082	1	0.9997046	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr5	14675275	12A2p6	cell line	sgMsh2	14675275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	107	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.T4146C:p.P1382P,Pclo:NM_011995:exon5:c.T4146C:p.P1382P"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999025	CTC	synonymous	NA	NA	NA	NA
M2	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	137	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999881	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr5	14790375	12A2p6	cell line	sgMsh2	14790375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	174	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon18:c.T14143C:p.L4715L,Pclo:NM_011995:exon18:c.T14143C:p.L4715L"	5qA1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999991	CTT	synonymous	NA	NA	NA	NA
M2	chr5	16355580	12A2p6	cell line	sgMsh2	16355580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	41	7	5	0.714285714	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110846:exon28:c.A2358G:p.A786A,Cacna2d1:NM_009784:exon28:c.A2373G:p.A791A,Cacna2d1:NM_001110843:exon29:c.A2430G:p.A810A,Cacna2d1:NM_001110844:exon29:c.A2394G:p.A798A,Cacna2d1:NM_001110845:exon29:c.A2379G:p.A793A"	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.009939273	CAG	synonymous	NA	NA	NA	NA
M2	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	72	7	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9988629	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	17682063	12A2p6	cell line	sgMsh2	17682063	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	103	739	215	0.290933694	exonic	Sema3c	nonsynonymous SNV	Sema3c:NM_013657:exon11:c.C1111A:p.P371T	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9998709	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.494	126	142	25	0.176056338	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M2	chr5	21971920	12A2p6	cell line	sgMsh2	21971920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	232	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon38:c.A5747G:p.Y1916C	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	1.60E-08	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr5	21979653	12A2p6	cell line	sgMsh2	21979653	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	97	0	0	NA	exonic	Reln	stopgain	Reln:NM_001310464:exon33:c.G4863A:p.W1621X	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.189105344	3	0.9999933	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	22	2	2	1	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.963277	CAT	synonymous	NA	NA	NA	NA
M2	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	50	7	1	0.142857143	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9946923	CAC	synonymous	NA	NA	NA	NA
M2	chr5	24400563	12A2p6	cell line	sgMsh2	24400563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	40	19	4	0.210526316	exonic	Abcb8	synonymous SNV	Abcb8:NM_029020:exon3:c.C444T:p.P148P	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.752219033	1	0.7748858	CCT	synonymous	NA	NA	NA	NA
M2	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.73	29	3	1	0.333333333	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9772149	CCT	synonymous	NA	NA	NA	NA
M2	chr5	24534147	12A2p6	cell line	sgMsh2	24534147	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	86	0	0	NA	exonic	Asb10	nonsynonymous SNV	"Asb10:NM_001310476:exon4:c.C1133A:p.P378H,Asb10:NM_080444:exon4:c.C1178A:p.P393H"	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9995743	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	34	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9838526	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.789	119	21	17	0.80952381	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.999958	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr5	27842567	12A2p6	cell line	sgMsh2	27842567	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	119	0	0	NA	exonic	Htr5a	nonsynonymous SNV	Htr5a:NM_008314:exon1:c.G119A:p.R40Q	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.999958	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr5	30394684	12A2p6	cell line	sgMsh2	30394684	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	77	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon10:c.T915G:p.H305Q,Otof:NM_001313767:exon10:c.T915G:p.H305Q,Otof:NM_031875:exon10:c.T915G:p.H305Q,Otof:NM_001100395:exon11:c.T960G:p.H320Q"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9991993	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr5	30917518	12A2p6	cell line	sgMsh2	30917518	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	27	0	0	NA	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon4:c.C1102T:p.R368W	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9738687	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	71	6	2	0.333333333	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9987803	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	68	91	24	0.263736264	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M2	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	125	66	19	0.287878788	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999725	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M2	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	121	62	18	0.290322581	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.974943105	1	0.9999001	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M2	chr5	31190369	12A2p6	cell line	sgMsh2	31190369	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	58	13	0.224137931	exonic	Eif2b4	nonsynonymous SNV	"Eif2b4:NM_001127356:exon8:c.G938A:p.R313Q,Eif2b4:NM_001127355:exon9:c.G938A:p.R313Q,Eif2b4:NM_010122:exon9:c.G878A:p.R293Q"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.99595481	1	0.9999351	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	51	145	45	0.310344828	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9950504	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	31200481	12A2p6	cell line	sgMsh2	31200481	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.19	82	40	0	0	exonic	Zfp513	nonsynonymous SNV	"Zfp513:NM_001177901:exon2:c.T547C:p.Y183H,Zfp513:NM_175311:exon3:c.T553C:p.Y185H"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.798444784	1	0.8793215	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	31247403	12A2p6	cell line	sgMsh2	31247403	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.361	137	124	0	0	exonic	Nrbp1	frameshift insertion	"Nrbp1:NM_147201:exon8:c.724dupT:p.A244Cfs*67,Nrbp1:NM_001347326:exon9:c.748dupT:p.A252Cfs*67"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	NA	NA	ACT	frameshift	T	5	TTTTT	1
M2	chr5	31251970	12A2p6	cell line	sgMsh2	31251970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	37	9	2	0.222222222	exonic	Krtcap3	nonsynonymous SNV	"Krtcap3:NM_001363337:exon2:c.T80C:p.L27P,Krtcap3:NM_027221:exon2:c.T80C:p.L27P"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9868797	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.738	182	31	20	0.64516129	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9999995	CAG	synonymous	NA	NA	NA	NA
M2	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	161	53	11	0.20754717	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999978	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M2	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	91	15	4	0.266666667	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9997003	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	102	22	12	0.545454545	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.600934759	2	0.9904962	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr5	33778651	12A2p6	cell line	sgMsh2	33778651	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	117	22	7	0.318181818	exonic	Letm1	nonsynonymous SNV	Letm1:NM_019694:exon2:c.G97A:p.A33T	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999517	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr5	34842827	12A2p6	cell line	sgMsh2	34842827	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	117	19	0	0	exonic	Htt	frameshift deletion	Htt:NM_010414:exon29:c.3733delG:p.F1247Sfs*12	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	156	35	10	0.285714286	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999969	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr5	35517523	12A2p6	cell line	sgMsh2	35517523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	41	0	0	NA	exonic	Cpz	synonymous SNV	Cpz:NM_153107:exon3:c.T381C:p.C127C	5qB2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.009939273	CAC	synonymous	NA	NA	NA	NA
M2	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	38	35	4	0.114285714	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9877585	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	38672453	12A2p6	cell line	sgMsh2	38672453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	126	3	3	1	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.G2208T:p.E736D,Zfp518b:NM_001081144:exon4:c.G2208T:p.E736D"	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999743	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr5	41635905	12A2p6	cell line	sgMsh2	41635905	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	47	101	35	0.346534653	exonic	Rab28	nonsynonymous SNV	"Rab28:NM_001310589:exon5:c.C396A:p.D132E,Rab28:NM_001310590:exon5:c.C396A:p.D132E,Rab28:NM_001310592:exon5:c.C165A:p.D55E,Rab28:NM_027295:exon5:c.C396A:p.D132E"	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9934558	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr5	44045543	12A2p6	cell line	sgMsh2	44045543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	118	0	0	NA	exonic	Prom1	nonsynonymous SNV	"Prom1:NM_001163578:exon5:c.A647G:p.N216S,Prom1:NM_001163581:exon5:c.A632G:p.N211S,Prom1:NM_001163582:exon5:c.A647G:p.N216S,Prom1:NM_001163583:exon5:c.A647G:p.N216S,Prom1:NM_001163584:exon5:c.A647G:p.N216S,Prom1:NM_001163585:exon6:c.A674G:p.N225S,Prom1:NM_008935:exon6:c.A647G:p.N216S,Prom1:NM_001163577:exon7:c.A674G:p.N225S"	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.999955	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	48374400	12A2p6	cell line	sgMsh2	48374400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	168	19	7	0.368421053	exonic	Pacrgl	synonymous SNV	Pacrgl:NM_025755:exon3:c.T69C:p.R23R	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999987	GTA	synonymous	NA	NA	NA	NA
M2	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	110	96	25	0.260416667	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.999921	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	33	129	33	0.255813953	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9826982	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	200	69	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	64926354	12A2p6	cell line	sgMsh2	64926354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	169	1	0	0	exonic	Tlr1	synonymous SNV	"Tlr1:NM_030682:exon3:c.G879A:p.R293R,Tlr1:NM_001276445:exon4:c.G879A:p.R293R"	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.941324377	1	0.9999661	TCC	synonymous	NA	NA	NA	NA
M2	chr5	65141405	12A2p6	cell line	sgMsh2	65141405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	109	65	18	0.276923077	exonic	Klhl5	nonsynonymous SNV	"Klhl5:NM_001347355:exon2:c.A106G:p.I36V,Klhl5:NM_001359401:exon2:c.A526G:p.I176V,Klhl5:NM_175174:exon2:c.A526G:p.I176V"	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999153	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr5	65383394	12A2p6	cell line	sgMsh2	65383394	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.261	94	0	0	NA	exonic	Klb	synonymous SNV	Klb:NM_031180:exon5:c.C2829T:p.F943F	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9997572	TCA	synonymous	T	5	TTTTT	NA
M2	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.665	72	87	48	0.551724138	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9988629	GTA	synonymous	NA	NA	NA	NA
M2	chr5	66284195	12A2p6	cell line	sgMsh2	66284195	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	85	0	0	NA	exonic	Nsun7	frameshift deletion	"Nsun7:NM_027602:exon8:c.1206delT:p.L403Yfs*25,Nsun7:NM_001302833:exon9:c.1206delT:p.L403Yfs*25"	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	54	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9959869	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr5	69579515	12A2p6	cell line	sgMsh2	69579515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	91	55	5	0.090909091	exonic	Gnpda2	nonsynonymous SNV	"Gnpda2:NM_001038015:exon5:c.C587T:p.A196V,Gnpda2:NM_001347363:exon5:c.C581T:p.A194V,Gnpda2:NM_001359239:exon5:c.C587T:p.A196V"	5qC3.1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9997003	AGC	nonsynonymous	CATC	8	CATCCATC	NA
M2	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	159	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999975	TAT	synonymous	NA	NA	NA	NA
M2	chr5	72667744	12A2p6	cell line	sgMsh2	72667744	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	128	20	6	0.3	exonic	Nipal1	nonsynonymous SNV	Nipal1:NM_001081205:exon6:c.C779T:p.A260V	5qC3.2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.815254148	1	0.9452827	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr5	74458548	12A2p6	cell line	sgMsh2	74458548	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	100	0	0	NA	exonic	Scfd2	nonsynonymous SNV	Scfd2:NM_178672:exon5:c.C1406A:p.P469H	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.848872876	1	0.9763476	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr5	74571100	12A2p6	cell line	sgMsh2	74571100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	105	228	69	0.302631579	exonic	Fip1l1	nonsynonymous SNV	"Fip1l1:NM_001159574:exon10:c.A745G:p.R249G,Fip1l1:NM_024183:exon10:c.A745G:p.R249G,Fip1l1:NM_001159573:exon11:c.A853G:p.R285G,Fip1l1:NM_001376965:exon11:c.A814G:p.R272G,Fip1l1:NM_001376964:exon12:c.A922G:p.R308G"	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9998878	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	76230280	12A2p6	cell line	sgMsh2	76230280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	116	39	8	0.205128205	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1772C:p.L591P,Clock:NM_001289826:exon20:c.T1772C:p.L591P,Clock:NM_007715:exon20:c.T1772C:p.L591P"	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999482	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.758	97	31	15	0.483870968	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9998033	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.761	78	42	19	0.452380952	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M2	chr5	76621329	12A2p6	cell line	sgMsh2	76621329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	95	12	4	0.333333333	exonic	Cep135	nonsynonymous SNV	Cep135:NM_199032:exon14:c.A1825G:p.T609A	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9997737	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	117	69	12	0.173913043	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.861479899	1	0.9895474	CTG	synonymous	NA	NA	NA	NA
M2	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	75	103	28	0.27184466	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9990787	ATT	synonymous	NA	NA	NA	NA
M2	chr5	81512563	12A2p6	cell line	sgMsh2	81512563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	158	41	2	0.048780488	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon6:c.C959T:p.S320F,Adgrl3:NM_001347371:exon7:c.C974T:p.S325F,Adgrl3:NM_001359826:exon7:c.C461T:p.S154F,Adgrl3:NM_001359833:exon7:c.C974T:p.S325F,Adgrl3:NM_001347368:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359830:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359831:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359832:exon8:c.C1163T:p.S388F,Adgrl3:NM_001359834:exon8:c.C1163T:p.S388F,Adgrl3:NM_001347367:exon9:c.C1178T:p.S393F,Adgrl3:NM_001347369:exon9:c.C1178T:p.S393F,Adgrl3:NM_001359828:exon9:c.C1178T:p.S393F,Adgrl3:NM_198702:exon9:c.C1178T:p.S393F"	5qD	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999973	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr5	84081124	12A2p6	cell line	sgMsh2	84081124	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	96	2	0	0	exonic	Epha5	synonymous SNV	Epha5:NM_007937:exon13:c.A2118C:p.V706V	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.999789	TTA	synonymous	NA	NA	NA	NA
M2	chr5	86124410	12A2p6	cell line	sgMsh2	86124410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	71	99	41	0.414141414	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon28:c.A2419G:p.T807A	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9987803	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	86197602	12A2p6	cell line	sgMsh2	86197602	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	154	0	0	NA	exonic	Gnrhr	nonsynonymous SNV	"Gnrhr:NM_001310651:exon1:c.G224A:p.R75K,Gnrhr:NM_001310653:exon1:c.G224A:p.R75K,Gnrhr:NM_010323:exon1:c.G224A:p.R75K"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999964	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.75	83	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9994745	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	127	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999761	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.679	114	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9999404	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	145	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999932	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.768	119	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.999958	AAG	synonymous	NA	NA	NA	NA
M2	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.753	122	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.999966	AAC	synonymous	A	5	AAAAA	NA
M2	chr5	90232380	12A2p6	cell line	sgMsh2	90232380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	93	195	57	0.292307692	exonic	Ankrd17	nonsynonymous SNV	"Ankrd17:NM_198010:exon31:c.T6695C:p.M2232T,Ankrd17:NM_030886:exon32:c.T7448C:p.M2483T"	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9997395	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.713	96	1445	1065	0.737024221	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.999789	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr5	95342682	12A2p6	cell line	sgMsh2	95342682	C	-	Deletion	Strelka2;Vardict	2	0.1628	215	0	0	NA	exonic	Pramel47	frameshift deletion	Pramel47:NM_001270456:exon5:c.1172delC:p.L392fs*0	5qE3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.68414111	NA	NA	ACC	frameshift	NA	NA	NA	-1
M2	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	53	237	75	0.316455696	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9956962	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	110	50	16	0.32	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.999921	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	118	47	16	0.340425532	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.999955	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	173	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	164	69	16	0.231884058	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999982	AAG	synonymous	NA	NA	NA	NA
M2	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	68	48	22	0.458333333	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9984947	ATA	synonymous	NA	NA	NA	NA
M2	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	91	14	6	0.428571429	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.987550128	1	0.9995633	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.75	111	16	14	0.875	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9999264	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	35	8	1	0.125	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9849311	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr5	109220383	12A2p6	cell line	sgMsh2	109220383	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	387	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon3:c.A742T:p.M248L,Vmn2r14:NM_001384975:exon3:c.A742T:p.M248L"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr5	109557524	12A2p6	cell line	sgMsh2	109557524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	78	0	0	NA	exonic	Crlf2	nonsynonymous SNV	"Crlf2:NM_001164735:exon2:c.A170G:p.E57G,Crlf2:NM_001310694:exon2:c.A164G:p.E55G,Crlf2:NM_016715:exon2:c.A170G:p.E57G"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9992536	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr5	111224177	12A2p6	cell line	sgMsh2	111224177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	85	8	1	0.125	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.T2491C:p.Y831H	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9995433	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr5	111224354	12A2p6	cell line	sgMsh2	111224354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	65	6	0	0	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.G2668A:p.A890T	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9981424	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr5	113076019	12A2p6	cell line	sgMsh2	113076019	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	26	0	0	NA	exonic	Crybb3	synonymous SNV	"Crybb3:NM_001159650:exon6:c.C523A:p.R175R,Crybb3:NM_001359006:exon6:c.C523A:p.R175R,Crybb3:NM_001359008:exon6:c.C523A:p.R175R,Crybb3:NM_021352:exon6:c.C523A:p.R175R,Crybb3:NM_001359004:exon7:c.C523A:p.R175R,Crybb3:NM_001359005:exon7:c.C523A:p.R175R,Crybb3:NM_001359007:exon7:c.C523A:p.R175R"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9720207	CGC	synonymous	NA	NA	NA	NA
M2	chr5	113095599	12A2p6	cell line	sgMsh2	113095599	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	46	13	4	0.307692308	exonic	2900026A02Rik	nonsynonymous SNV	"2900026A02Rik:NM_001347397:exon4:c.G808A:p.D270N,2900026A02Rik:NM_172884:exon4:c.G577A:p.D193N,2900026A02Rik:NM_001375886:exon9:c.G4954A:p.D1652N"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.992983	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr5	113819003	12A2p6	cell line	sgMsh2	113819003	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	49	0	0	NA	exonic	Selplg	nonsynonymous SNV	Selplg:NM_009151:exon2:c.G1241A:p.S414N	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9943084	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	71	68	9	0.132352941	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9987803	GTG	synonymous	NA	NA	NA	NA
M2	chr5	114769628	12A2p6	cell line	sgMsh2	114769628	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	105	64	0	0	exonic	Git2	frameshift deletion	"Git2:NM_001077359:exon2:c.175delA:p.T59Pfs*27,Git2:NM_001077360:exon2:c.175delA:p.T59Pfs*27,Git2:NM_001347400:exon2:c.175delA:p.T59Pfs*27,Git2:NM_019834:exon2:c.175delA:p.T59Pfs*27"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.64	53	139	96	0.690647482	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9956962	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	42	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.537899644	2	0.8467972	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	69	44	15	0.340909091	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9985967	CTT	synonymous	NA	NA	NA	NA
M2	chr5	119836935	12A2p6	cell line	sgMsh2	119836935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	59	0	0	NA	exonic	Tbx5	nonsynonymous SNV	Tbx5:NM_011537:exon2:c.T22C:p.F8L	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9971718	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr5	121467865	12A2p6	cell line	sgMsh2	121467865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	71	1	0	0	exonic	Tmem116	synonymous SNV	"Tmem116:NM_001161626:exon4:c.C171T:p.L57L,Tmem116:NM_001161627:exon4:c.C171T:p.L57L"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9987803	TCT	synonymous	NA	NA	NA	NA
M2	chr5	121828780	12A2p6	cell line	sgMsh2	121828780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	11	16	7	0.4375	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.T270A:p.T90T,Sh2b3:NM_008507:exon2:c.T270A:p.T90T,Sh2b3:NM_001306126:exon3:c.T270A:p.T90T,Sh2b3:NM_001306127:exon3:c.T270A:p.T90T"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9233844	CAG	synonymous	NA	NA	NA	NA
M2	chr5	122764221	12A2p6	cell line	sgMsh2	122764221	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	26	2	1	0.5	exonic	Camkk2	synonymous SNV	"Camkk2:NM_001199676:exon2:c.G24A:p.Q8Q,Camkk2:NM_145358:exon2:c.G24A:p.Q8Q"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9720207	GCT	synonymous	GGCT	8	GGCTGGCT	NA
M2	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.634	120	13	12	0.923076923	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.9999609	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	136	17	4	0.235294118	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999873	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	101	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.928717354	1	0.9983759	GTG	nonsynonymous	G	5	GGGGG	NA
M2	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	129	287	73	0.254355401	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999792	AAA	synonymous	NA	NA	NA	NA
M2	chr5	124811492	12A2p6	cell line	sgMsh2	124811492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	121	0	0	NA	exonic	Dnah10	synonymous SNV	Dnah10:NM_019536:exon55:c.G9330T:p.V3110V	5qF	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999635	TGG	synonymous	NA	NA	NA	NA
M2	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	90	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9996785	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	130013984	12A2p6	cell line	sgMsh2	130013984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	66	70	33	0.471428571	exonic	Asl	nonsynonymous SNV	Asl:NM_133768:exon10:c.A697G:p.T233A	5qG1.3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9982681	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	142	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999917	TAC	synonymous	NA	NA	NA	NA
M2	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	137	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999881	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr5	137113037	12A2p6	cell line	sgMsh2	137113037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	63	24	6	0.25	exonic	Trim56	nonsynonymous SNV	Trim56:NM_201373:exon3:c.G1624A:p.A542T	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9978629	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr5	137645348	12A2p6	cell line	sgMsh2	137645348	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.501	10	0	0	NA	exonic	Irs3	nonsynonymous SNV	Irs3:NM_010571:exon1:c.G173A:p.R58H	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9180997	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr5	138183136	12A2p6	cell line	sgMsh2	138183136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	43	52	20	0.384615385	exonic	Taf6	nonsynonymous SNV	"Taf6:NM_001356600:exon6:c.T533C:p.L178P,Taf6:NM_001356601:exon6:c.T533C:p.L178P,Taf6:NM_001356602:exon6:c.T533C:p.L178P,Taf6:NM_009315:exon6:c.T533C:p.L178P"	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9913518	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.762	119	37	30	0.810810811	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	0.999958	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	139392899	12A2p6	cell line	sgMsh2	139392899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	119	6	1	0.166666667	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.G455A:p.G152E,Gpr146:NM_001362206:exon2:c.G455A:p.G152E,Gpr146:NM_030258:exon2:c.G455A:p.G152E"	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.999958	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr5	140524513	12A2p6	cell line	sgMsh2	140524513	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	35	28	16	0.571428571	exonic	Chst12	nonsynonymous SNV	Chst12:NM_021528:exon2:c.C894G:p.S298R	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9849311	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr5	144255827	12A2p6	cell line	sgMsh2	144255827	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	43	360	142	0.394444444	exonic	Bri3	nonsynonymous SNV	"Bri3:NM_001163709:exon2:c.C148T:p.P50S,Bri3:NM_018772:exon2:c.C160T:p.P54S"	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9913518	CCC	nonsynonymous	C	5	CCCCC	NA
M2	chr5	144750917	12A2p6	cell line	sgMsh2	144750917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	116	0	0	NA	exonic	Tmem130	nonsynonymous SNV	Tmem130:NM_177735:exon4:c.T608C:p.V203A	5qG2	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999482	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.726	215	72	52	0.722222222	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	3	1	1	5.06E-08	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	117	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	0.861479899	1	0.9895474	TAC	synonymous	NA	NA	NA	NA
M2	chr5	150552328	12A2p6	cell line	sgMsh2	150552328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	111	11	3	0.272727273	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon16:c.A7502G:p.Q2501R,Brca2:NM_009765:exon16:c.A7502G:p.Q2501R"	5qG3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	2	1	1	0.9999264	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr5	150662086	12A2p6	cell line	sgMsh2	150662086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	189	148	32	0.216216216	exonic	N4bp2l2	nonsynonymous SNV	"N4bp2l2:NM_001362416:exon2:c.A428G:p.D143G,N4bp2l2:NM_201369:exon2:c.A428G:p.D143G"	5qG3	chr5-3344382-151645584	4	3	1	0.99	4.160317559	NA	1	1	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.668	72	42	7	0.166666667	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M2	chr6	3375301	12A2p6	cell line	sgMsh2	3375301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	157	14	2	0.142857143	exonic	Samd9l	synonymous SNV	Samd9l:NM_010156:exon2:c.T1959C:p.N653N	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.596732418	2	0.9997517	CAT	synonymous	NA	NA	NA	NA
M2	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	212	26	6	0.230769231	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.86568224	1	0.9992102	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr6	3377251	12A2p6	cell line	sgMsh2	3377251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	131	33	3	0.090909091	exonic	Samd9l	synonymous SNV	Samd9l:NM_010156:exon2:c.A9G:p.G3G	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.924515013	1	0.9995165	GTC	synonymous	NA	NA	NA	NA
M2	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	130	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	0.9826101	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M2	chr6	3692703	12A2p6	cell line	sgMsh2	3692703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	108	0	0	NA	exonic	Calcr	nonsynonymous SNV	"Calcr:NM_001042725:exon13:c.A1039G:p.T347A,Calcr:NM_001355192:exon13:c.A1039G:p.T347A,Calcr:NM_001377018:exon14:c.A1150G:p.T384A,Calcr:NM_007588:exon14:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9636207	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	4518518	12A2p6	cell line	sgMsh2	4518518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	109	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon13:c.A657G:p.A219A	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.395020051	3	0.5364831	CAG	synonymous	NA	NA	NA	NA
M2	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	126	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.504280916	2	0.9995677	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	187	67	11	0.164179104	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	2	0.9999941	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M2	chr6	4689677	12A2p6	cell line	sgMsh2	4689677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	43	0	0	NA	exonic	Sgce	synonymous SNV	"Sgce:NM_001130189:exon8:c.T1128C:p.S376S,Sgce:NM_001130191:exon8:c.T1128C:p.S376S,Sgce:NM_001130190:exon9:c.T1155C:p.S385S,Sgce:NM_011360:exon9:c.T1155C:p.S385S,Sgce:NM_001130188:exon10:c.T1263C:p.S421S"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.8263747	TAG	synonymous	NA	NA	NA	NA
M2	chr6	4691568	12A2p6	cell line	sgMsh2	4691568	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	64	0	0	NA	exonic	Sgce	stopgain	"Sgce:NM_001130189:exon7:c.G898T:p.E300X,Sgce:NM_001130190:exon7:c.G898T:p.E300X,Sgce:NM_001130191:exon7:c.G898T:p.E300X,Sgce:NM_011360:exon7:c.G898T:p.E300X,Sgce:NM_001130188:exon8:c.G1006T:p.E336X"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.941324377	1	0.993091	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	238	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9970201	TGC	synonymous	NA	NA	NA	NA
M2	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	58	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	1	0.9969666	AAG	synonymous	NA	NA	NA	NA
M2	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	42	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.525292621	2	0.8633214	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	144	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.470662189	2	0.9971639	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	199	977	179	0.18321392	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.7256102	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.21	116	1440	249	0.172916667	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.882491604	1	0.9952103	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M2	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	77	897	164	0.182831661	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.836265853	1	0.9496962	CAC	synonymous	NA	NA	NA	NA
M2	chr6	7871250	12A2p6	cell line	sgMsh2	7871250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	92	200	26	0.13	exonic	C1galt1	nonsynonymous SNV	C1galt1:NM_052993:exon4:c.A1085G:p.N362S	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.512685598	2	0.9973905	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	8083742	12A2p6	cell line	sgMsh2	8083742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	250	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon21:c.G1714T:p.G572W	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.483269211	2	0.9999837	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1402	107	85	7	0.082352941	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.589168204	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2	chr6	12330984	12A2p6	cell line	sgMsh2	12330984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	105	2	0	0	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon21:c.T4158C:p.G1386G	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.672374555	2	0.9121809	TAC	synonymous	NA	NA	NA	NA
M2	chr6	12352020	12A2p6	cell line	sgMsh2	12352020	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	113	1	0	0	exonic	Thsd7a	stopgain	Thsd7a:NM_001164805:exon14:c.G3175T:p.G1059X	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.689183919	2	0.8827415	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	95	1	0	0	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.592530077	2	0.9887282	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M2	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	193	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.449650484	2	0.9930152	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	98	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	2	0.9958581	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	14718753	12A2p6	cell line	sgMsh2	14718753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	175	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.G2161A:p.A721T	6qA1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.542101985	2	0.9999961	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	129	130	6	0.046153846	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.336187278	3	0.9930705	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	181	780	129	0.165384615	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.714397965	2	0.9400606	GTT	synonymous	NA	NA	NA	NA
M2	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	170	780	134	0.171794872	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	0.9969982	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	262	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.676576896	2	0.9996808	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	18433922	12A2p6	cell line	sgMsh2	18433922	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	127	0	0	NA	exonic	Cttnbp2	frameshift deletion	Cttnbp2:NM_080285:exon4:c.1936delC:p.V647Sfs*11	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.806849466	NA	NA	AGG	frameshift	NA	NA	NA	-1
M2	chr6	18866607	12A2p6	cell line	sgMsh2	18866607	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	97	0	0	NA	exonic	Ankrd7	nonsynonymous SNV	"Ankrd7:NM_001167757:exon1:c.A125G:p.H42R,Ankrd7:NM_029202:exon1:c.A125G:p.H42R"	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.462257507	2	0.9804209	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	143	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.680779237	2	0.9680569	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.696	171	127	81	0.637795276	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	3	1	1	0.9999989	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M2	chr6	23000054	12A2p6	cell line	sgMsh2	23000054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	273	4	1	0.25	exonic	Ptprz1	synonymous SNV	"Ptprz1:NM_001081306:exon12:c.A2142G:p.T714T,Ptprz1:NM_001311064:exon12:c.A2142G:p.T714T,Ptprz1:NM_001361349:exon12:c.A2142G:p.T714T,Ptprz1:NM_011219:exon12:c.A2142G:p.T714T"	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.558911349	2	5.88E-09	CAG	synonymous	NA	NA	NA	NA
M2	chr6	23001661	12A2p6	cell line	sgMsh2	23001661	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	255	0	0	NA	exonic	Ptprz1	nonsynonymous SNV	"Ptprz1:NM_001081306:exon12:c.C3749T:p.P1250L,Ptprz1:NM_011219:exon12:c.C3749T:p.P1250L"	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	1	0.9999948	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	23626800	12A2p6	cell line	sgMsh2	23626800	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	136	2	0	0	exonic	Cadps2	nonsynonymous SNV	"Cadps2:NM_001252105:exon3:c.C488A:p.A163D,Cadps2:NM_001252106:exon3:c.C488A:p.A163D,Cadps2:NM_001252107:exon3:c.C488A:p.A163D,Cadps2:NM_001252108:exon3:c.C488A:p.A163D,Cadps2:NM_001252109:exon3:c.C488A:p.A163D,Cadps2:NM_001252110:exon3:c.C488A:p.A163D,Cadps2:NM_153163:exon3:c.C488A:p.A163D"	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.836265853	1	0.9795622	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	191	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.495876234	2	0.9999626	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr6	24089045	12A2p6	cell line	sgMsh2	24089045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	139	0	0	NA	exonic	Slc13a1	nonsynonymous SNV	Slc13a1:NM_019481:exon15:c.T1705C:p.F569L	6qA3.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.65136285	2	0.990311	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	28883359	12A2p6	cell line	sgMsh2	28883359	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	110	316	29	0.091772152	exonic	Snd1	nonsynonymous SNV	Snd1:NM_019776:exon19:c.G2212A:p.A738T	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.533697303	2	0.9993732	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	162	43	6	0.139534884	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.437043461	2	0.9595511	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	120	115	12	0.104347826	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	3	0.7696962	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	230	253	47	0.185770751	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.634553486	2	0.9999576	AAC	nonsynonymous	A	5	AAAAA	NA
M2	chr6	32202212	12A2p6	cell line	sgMsh2	32202212	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	113	32	1	0.03125	exonic	Plxna4	nonsynonymous SNV	Plxna4:NM_175750:exon15:c.C2867T:p.A956V	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.588327736	2	0.997001	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	33305370	12A2p6	cell line	sgMsh2	33305370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	247	79	15	0.189873418	exonic	Exoc4	nonsynonymous SNV	"Exoc4:NM_001347089:exon5:c.T742C:p.Y248H,Exoc4:NM_009148:exon5:c.T742C:p.Y248H"	6qA3.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.773230738	1	0.6098228	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr6	34872820	12A2p6	cell line	sgMsh2	34872820	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	85	32	7	0.21875	exonic	Tmem140	synonymous SNV	"Tmem140:NM_197986:exon2:c.C270A:p.A90A,Tmem140:NM_001368365:exon3:c.C270A:p.A90A"	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.9995433	CCC	synonymous	NA	NA	NA	NA
M2	chr6	35078027	12A2p6	cell line	sgMsh2	35078027	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.152	116	89	9	0.101123596	exonic	Cnot4	frameshift deletion	"Cnot4:NM_001164411:exon3:c.326delA:p.N109Tfs*5,Cnot4:NM_001164412:exon3:c.326delA:p.N109Tfs*5,Cnot4:NM_001164413:exon3:c.326delA:p.N109Tfs*5,Cnot4:NM_001164414:exon3:c.326delA:p.N109Tfs*5,Cnot4:NM_016877:exon3:c.326delA:p.N109Tfs*5"	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.638755827	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2	chr6	35244733	12A2p6	cell line	sgMsh2	35244733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	201	145	19	0.131034483	exonic	Nup205	nonsynonymous SNV	Nup205:NM_027513:exon40:c.A5599G:p.I1867V	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.7765594	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.899300967	1	0.9978318	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	35280331	12A2p6	cell line	sgMsh2	35280331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	74	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon8:c.A871G:p.I291V	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.445448143	2	0.9286202	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	37362427	12A2p6	cell line	sgMsh2	37362427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	81	140	23	0.164285714	exonic	Creb3l2	nonsynonymous SNV	Creb3l2:NM_178661:exon4:c.A514C:p.T172P	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.752219033	1	8.82E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	149	13	3	0.230769231	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.769028397	1	0.677984	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	339	54	9	0.166666667	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.827861171	1	0.997824	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	62	241	23	0.095435685	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.609339441	2	0.8780905	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M2	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	44	2	1	0.5	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.491673893	2	0.9019486	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr6	39574305	12A2p6	cell line	sgMsh2	39574305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	66	23	3	0.130434783	exonic	Adck2	nonsynonymous SNV	Adck2:NM_178873:exon1:c.T5C:p.V2A	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.668172214	2	9.44E-06	GTG	nonsynonymous	C	5	CCCCC	NA
M2	chr6	40544466	12A2p6	cell line	sgMsh2	40544466	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	237	0	0	NA	exonic	Olfr461	nonsynonymous SNV	Olfr461:NM_146382:exon1:c.A512C:p.N171T	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.117665547	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	250	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.550506667	2	1.71E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	185	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.449650484	2	0.9919164	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	199	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.710195624	2	0.9699861	CTT	synonymous	NA	NA	NA	NA
M2	chr6	40897547	12A2p6	cell line	sgMsh2	40897547	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	132	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon4:c.T194A:p.I65N	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.630351145	2	0.9946713	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;MuSe;Vardict	3	0.14	418	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.588327736	2	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	170	7	0	0	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.56311369	2	0.9999837	TTG	synonymous	NA	NA	NA	NA
M2	chr6	41627413	12A2p6	cell line	sgMsh2	41627413	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	114	0	0	NA	exonic	Trpv6	nonsynonymous SNV	Trpv6:NM_022413:exon3:c.G408C:p.M136I	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	1	0.9993543	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr6	42216021	12A2p6	cell line	sgMsh2	42216021	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	211	0	0	NA	exonic	Tas2r144	nonsynonymous SNV	Tas2r144:NM_001001453:exon1:c.G694T:p.G232C	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.495876234	2	0.9999851	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	48	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.869884581	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr6	42350378	12A2p6	cell line	sgMsh2	42350378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	19	130	29	0.223076923	exonic	Zyx	nonsynonymous SNV	"Zyx:NM_001289617:exon2:c.A110T:p.N37I,Zyx:NM_001289618:exon2:c.A110T:p.N37I,Zyx:NM_001289619:exon2:c.A110T:p.N37I,Zyx:NM_011777:exon2:c.A110T:p.N37I"	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.886693944	1	0.9120963	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	112	286	53	0.185314685	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.981296	ACG	synonymous	NA	NA	NA	NA
M2	chr6	42363889	12A2p6	cell line	sgMsh2	42363889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	157	3	1	0.333333333	exonic	Epha1	nonsynonymous SNV	Epha1:NM_023580:exon9:c.G1636A:p.G546R	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.613541781	2	0.9994031	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	130	70	8	0.114285714	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.958133741	1	0.9998816	ATG	synonymous	NA	NA	NA	NA
M2	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	107	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.7890255	ATG	nonsynonymous	G	5	GGGGG	NA
M2	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.777433079	1	0.752475	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	363	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.579923054	2	1.06E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	170	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.428638779	2	0.9168114	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	47095552	12A2p6	cell line	sgMsh2	47095552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	86	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon19:c.A3053C:p.N1018T	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.487471552	2	0.9918335	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	114	8	0	0	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.760623715	1	0.6582832	TAG	synonymous	NA	NA	NA	NA
M2	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	48	25	5	0.2	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.878289263	1	0.958936	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	47	39	8	0.205128205	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.65136285	2	0.6044722	GTG	synonymous	NA	NA	NA	NA
M2	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	79	9	3	0.333333333	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.941324377	1	0.9967594	CCC	synonymous	NA	NA	NA	NA
M2	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	65	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.542101985	2	0.9716692	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	65	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.722802647	1	7.83E-07	GTC	synonymous	NA	NA	NA	NA
M2	chr6	48466369	12A2p6	cell line	sgMsh2	48466369	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon39:c.C6172T:p.L2058L	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9797711	TCT	synonymous	NA	NA	NA	NA
M2	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	65	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.689183919	2	0.6057827	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	98	2	1	0.5	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.974943105	1	0.9995853	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	48571804	12A2p6	cell line	sgMsh2	48571804	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	166	0	0	NA	exonic	Rarres2	synonymous SNV	"Rarres2:NM_001347167:exon3:c.G264A:p.E88E,Rarres2:NM_001347168:exon3:c.G264A:p.E88E,Rarres2:NM_027852:exon3:c.G264A:p.E88E"	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9994948	ACT	synonymous	NA	NA	NA	NA
M2	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	7	1	0.142857143	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.8117514	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	51457240	12A2p6	cell line	sgMsh2	51457240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	245	67	10	0.149253731	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.T779C:p.V260A	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.8151307	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	51575924	12A2p6	cell line	sgMsh2	51575924	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	134	153	36	0.235294118	exonic	Snx10	nonsynonymous SNV	"Snx10:NM_001127348:exon3:c.C46T:p.R16W,Snx10:NM_001127349:exon3:c.C46T:p.R16W,Snx10:NM_001361577:exon3:c.C46T:p.R16W,Snx10:NM_001361578:exon3:c.C46T:p.R16W,Snx10:NM_001361579:exon3:c.C46T:p.R16W,Snx10:NM_001361580:exon3:c.C46T:p.R16W,Snx10:NM_001361581:exon3:c.C46T:p.R16W,Snx10:NM_028035:exon3:c.C46T:p.R16W,Snx10:NM_001361576:exon4:c.C46T:p.R16W"	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.830861	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	53068567	12A2p6	cell line	sgMsh2	53068567	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.5	4	0	0	NA	exonic	Jazf1	nonsynonymous SNV	Jazf1:NM_173406:exon1:c.A1G:p.M1V	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	3	1	1	0.8747578	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.11	45	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.462257507	2	0.8939166	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	53818357	12A2p6	cell line	sgMsh2	53818357	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	39	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.C1879A:p.Q627K	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.907705649	1	0.963181	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	53819299	12A2p6	cell line	sgMsh2	53819299	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	49	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.C937T:p.L313F	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.9943084	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	54943932	12A2p6	cell line	sgMsh2	54943932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	51	0	0	NA	exonic	Nod1	nonsynonymous SNV	"Nod1:NM_001171007:exon4:c.T1400C:p.V467A,Nod1:NM_172729:exon4:c.T1400C:p.V467A"	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.701790942	1	0.5615694	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	145	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9854341	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	56703370	12A2p6	cell line	sgMsh2	56703370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	281	61	8	0.131147541	exonic	Lsm5	nonsynonymous SNV	Lsm5:NM_025520:exon2:c.T86C:p.V29A	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	0.9999779	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	295	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.638755827	2	0.9999977	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr6	57137820	12A2p6	cell line	sgMsh2	57137820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	295	0	0	NA	exonic	Vmn1r11	synonymous SNV	Vmn1r11:NM_053233:exon1:c.G468A:p.Q156Q	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.689183919	2	0.999679	AGA	synonymous	NA	NA	NA	NA
M2	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	269	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.932919695	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	57390454	12A2p6	cell line	sgMsh2	57390454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	261	0	0	NA	exonic	Vmn1r18	nonsynonymous SNV	Vmn1r18:NM_134181:exon1:c.G114T:p.M38I	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9990302	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	132	3	0	0	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.420234097	2	0.8197639	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	57646216	12A2p6	cell line	sgMsh2	57646216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	135	4	0	0	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon14:c.A1803G:p.I601M	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9483848	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	185	2	0	0	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.529494962	2	0.9999981	GAC	synonymous	NA	NA	NA	NA
M2	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	163	21	0	0	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.529494962	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.122	167	20	0	0	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.512685598	2	0.9999777	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	312	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.752219033	2	0.8877992	GTA	nonsynonymous	T	5	TTTTT	NA
M2	chr6	58009056	12A2p6	cell line	sgMsh2	58009056	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	290	0	0	NA	exonic	Vmn1r26	synonymous SNV	Vmn1r26:NM_134172:exon1:c.C147T:p.H49H	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.806849466	1	0.969692	TGT	synonymous	NA	NA	NA	NA
M2	chr6	59003477	12A2p6	cell line	sgMsh2	59003477	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	190	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon2:c.C59T:p.P20L	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.567316031	2	0.9999953	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	195	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.416031756	2	0.7459871	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	146	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.920312672	1	0.9996986	CCT	synonymous	NA	NA	NA	NA
M2	chr6	60987081	12A2p6	cell line	sgMsh2	60987081	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	78	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon7:c.G3063T:p.Q1021H,Mmrn1:NM_027613:exon7:c.G3066T:p.Q1022H"	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.680779237	2	9.16E-07	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	61570683	12A2p6	cell line	sgMsh2	61570683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	100	0	0	NA	exonic	Ccser1	nonsynonymous SNV	"Ccser1:NM_001164316:exon6:c.A1729G:p.R577G,Ccser1:NM_183310:exon6:c.A1729G:p.R577G"	6qB3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.718600306	2	0.6480282	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	64275843	12A2p6	cell line	sgMsh2	64275843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	189	0	0	NA	exonic	Grid2	frameshift deletion	"Grid2:NM_001370966:exon9:c.1294delA:p.K433Nfs*13,Grid2:NM_008167:exon9:c.1294delA:p.K433Nfs*13"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	NA	NA	CAA	frameshift	GACA	8	GACAGACA	-1
M2	chr6	65096792	12A2p6	cell line	sgMsh2	65096792	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	273	122	21	0.172131148	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001253392:exon14:c.A1477G:p.T493A,Smarcad1:NM_001355250:exon16:c.A2032G:p.T678A,Smarcad1:NM_007958:exon16:c.A2032G:p.T678A"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	2	0.9135203	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	65441209	12A2p6	cell line	sgMsh2	65441209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	113	0	0	NA	exonic	Qrfprl	synonymous SNV	Qrfprl:NM_175524:exon2:c.C360T:p.V120V	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.491673893	2	0.9981273	TCC	synonymous	NA	NA	NA	NA
M2	chr6	65869223	12A2p6	cell line	sgMsh2	65869223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	178	46	12	0.260869565	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon4:c.A343G:p.I115V,Prdm5:NM_027547:exon8:c.A895G:p.I299V"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.869884581	1	0.9985318	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.088	361	186	0	0	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.369806005	3	0.9998961	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	371	229	41	0.179039301	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	2	1.01E-09	CTG	synonymous	NA	NA	NA	NA
M2	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	105	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.714397965	2	0.7055144	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	231	1	0	0	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.491673893	2	0.9999894	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	185	123	18	0.146341463	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.722802647	2	0.9117029	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	71620176	12A2p6	cell line	sgMsh2	71620176	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	206	99	8	0.080808081	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362200:exon7:c.T716A:p.I239N,Kdm3a:NM_173001:exon7:c.T716A:p.I239N,Kdm3a:NM_001038695:exon8:c.T716A:p.I239N"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	2	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	136	108	6	0.055555556	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.239533435	3	0.9999981	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	51	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.504280916	2	0.9405904	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	131	372	51	0.137096774	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.491673893	2	0.9991662	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	133	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9821571	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	67	12	0	0	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.987550128	1	0.9978705	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr6	83050323	12A2p6	cell line	sgMsh2	83050323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	223	4	0	0	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon12:c.A1958G:p.Y653C	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.974943105	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.848872876	1	0.9768046	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	83311325	12A2p6	cell line	sgMsh2	83311325	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	174	602	79	0.131229236	exonic	Mthfd2	synonymous SNV	Mthfd2:NM_008638:exon4:c.T447C:p.S149S	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.853075217	1	0.9956882	GAG	synonymous	NA	NA	NA	NA
M2	chr6	83675875	12A2p6	cell line	sgMsh2	83675875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	227	0	0	NA	exonic	Cd207	nonsynonymous SNV	Cd207:NM_144943:exon3:c.T272C:p.I91T	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999954	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	79	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.882491604	1	0.984986	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	84113612	12A2p6	cell line	sgMsh2	84113612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	158	1	0	0	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon27:c.T2906C:p.V969A,Dysf:NM_001077694:exon28:c.T2996C:p.V999A,Dysf:NM_021469:exon28:c.T2999C:p.V1000A"	6qC3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.69338626	2	0.964002	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	57	59	8	0.13559322	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.714397965	1	0.5776113	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	247	341	67	0.196480938	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.882491604	1	0.9999188	CAA	synonymous	NA	NA	NA	NA
M2	chr6	87470565	12A2p6	cell line	sgMsh2	87470565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	160	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon5:c.A488G:p.Q163R,Arhgap25:NM_001037727:exon6:c.A755G:p.Q252R,Arhgap25:NM_175476:exon6:c.A677G:p.Q226R"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.979145446	1	0.9999929	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	87646187	12A2p6	cell line	sgMsh2	87646187	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	220	47	7	0.14893617	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon7:c.A972T:p.A324A,Aplf:NM_001372332:exon7:c.A972T:p.A324A,Aplf:NM_024251:exon7:c.A909T:p.A303A"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.462257507	2	0.9991845	GTG	synonymous	NA	NA	NA	NA
M2	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	133	81	6	0.074074074	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999843	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M2	chr6	87890251	12A2p6	cell line	sgMsh2	87890251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	115	378	37	0.097883598	exonic	Copg1	nonsynonymous SNV	"Copg1:NM_017477:exon5:c.T305C:p.V102A,Copg1:NM_201244:exon5:c.T305C:p.V102A"	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.47906687	2	0.9960593	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	114	110	22	0.2	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.739612011	2	0.5351031	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	56	4	2	0.5	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.43284112	2	0.8613398	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	278	36	2	0.055555556	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	3	0.9904903	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr6	91504694	12A2p6	cell line	sgMsh2	91504694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	76	34	4	0.117647059	exonic	Xpc	nonsynonymous SNV	Xpc:NM_009531:exon6:c.A644G:p.Y215C	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	1	0.9991411	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	124	96	10	0.104166667	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.458055166	2	0.9867371	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	74	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.718600306	2	0.5009797	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	91989173	12A2p6	cell line	sgMsh2	91989173	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	86	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.T2386G:p.F796V	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.647160509	2	0.9110267	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	92074160	12A2p6	cell line	sgMsh2	92074160	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.141	92	0	0	NA	exonic	Fgd5	synonymous SNV	Fgd5:NM_172731:exon20:c.G4416A:p.E1472E	6qD1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.592530077	2	0.986323	AGG	synonymous	AGG	9	AGGAGGAGG	NA
M2	chr6	97176199	12A2p6	cell line	sgMsh2	97176199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	172	120	19	0.158333333	exonic	Tmf1	synonymous SNV	Tmf1:NM_001081111:exon2:c.T912C:p.D304D	6qD3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.882491604	1	0.9991601	CAT	synonymous	NA	NA	NA	NA
M2	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	148	696	125	0.179597701	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9537093	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	378	55	12	0.218181818	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.727004988	2	0.9976211	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	103641995	12A2p6	cell line	sgMsh2	103641995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	212	0	0	NA	exonic	Chl1	stopgain	Chl1:NM_007697:exon3:c.A25T:p.R9X	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.718600306	2	0.9616849	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	103691582	12A2p6	cell line	sgMsh2	103691582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	103	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon12:c.A1275C:p.I425I	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	3	0.6977364	TAA	synonymous	A	5	AAAAA	NA
M2	chr6	103706542	12A2p6	cell line	sgMsh2	103706542	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	81	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon19:c.T2328G:p.T776T	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.638755827	2	0.9102866	CTG	synonymous	NA	NA	NA	NA
M2	chr6	103711184	12A2p6	cell line	sgMsh2	103711184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	81	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon23:c.C2984A:p.A995E	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.495876234	2	0.9920618	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	104726148	12A2p6	cell line	sgMsh2	104726148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	104	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon6:c.A530G:p.D177G	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.487471552	2	0.9963948	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	156	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.773230738	1	0.7143338	CTT	synonymous	NA	NA	NA	NA
M2	chr6	106778021	12A2p6	cell line	sgMsh2	106778021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	231	348	35	0.100574713	exonic	Trnt1	nonsynonymous SNV	"Trnt1:NM_001242358:exon6:c.A712G:p.I238V,Trnt1:NM_027296:exon6:c.A712G:p.I238V"	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.386615369	3	0.9544734	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	200	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	0.9992031	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	202	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.668172214	2	0.9983009	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	118	25	6	0.24	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.945526718	1	0.9996187	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	110645933	12A2p6	cell line	sgMsh2	110645933	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	36	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G66T:p.E22D,Grm7:NM_177328:exon1:c.G66T:p.E22D"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.9859386	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	81	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.840468194	1	0.9574821	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr6	111495835	12A2p6	cell line	sgMsh2	111495835	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	204	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.C2634T:p.H878H,Grm7:NM_177328:exon9:c.C2634T:p.H878H"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.449650484	2	0.9942878	ACA	synonymous	NA	NA	NA	NA
M2	chr6	113240331	12A2p6	cell line	sgMsh2	113240331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	141	53	4	0.075471698	exonic	Mtmr14	nonsynonymous SNV	"Mtmr14:NM_001362182:exon2:c.A203G:p.Y68C,Mtmr14:NM_026849:exon2:c.A203G:p.Y68C"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.554709008	2	0.9999012	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	190	538	97	0.180297398	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.705993283	2	0.9708574	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	74	1	0	0	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.802647125	1	0.8873204	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	308	16	1	0.0625	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.722802647	2	0.9935154	TTA	synonymous	NA	NA	NA	NA
M2	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	185	12	1	0.083333333	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.78163542	1	0.7830711	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	204	45	7	0.155555556	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.903503308	1	0.9999254	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	139	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.663969873	2	0.9827828	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	115	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.833444	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	115441520	12A2p6	cell line	sgMsh2	115441520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	116	575	127	0.220869565	exonic	Pparg	synonymous SNV	"Pparg:NM_011146:exon3:c.A339G:p.P113P,Pparg:NM_001127330:exon4:c.A249G:p.P83P,Pparg:NM_001308352:exon4:c.A249G:p.P83P,Pparg:NM_001308354:exon4:c.A249G:p.P83P"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.516887939	2	0.9995689	CAC	synonymous	NA	NA	NA	NA
M2	chr6	115490061	12A2p6	cell line	sgMsh2	115490061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	98	313	45	0.143769968	exonic	Pparg	nonsynonymous SNV	"Pparg:NM_011146:exon7:c.A1384G:p.K462E,Pparg:NM_001127330:exon8:c.A1294G:p.K432E,Pparg:NM_001308352:exon8:c.A1294G:p.K432E,Pparg:NM_001308354:exon8:c.A1294G:p.K432E"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.579923054	2	0.9938093	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	115617607	12A2p6	cell line	sgMsh2	115617607	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	84	9	0.107142857	exonic	Mkrn2	nonsynonymous SNV	Mkrn2:NM_023290:exon8:c.T1127C:p.V376A	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9587965	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	115955846	12A2p6	cell line	sgMsh2	115955846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	113	135	18	0.133333333	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon36:c.C5672T:p.A1891V	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.458055166	2	0.9828926	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	116022230	12A2p6	cell line	sgMsh2	116022230	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	722	43	0	0	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon4:c.G847T:p.V283L,Tmcc1:NM_177412:exon6:c.G1807T:p.V603L"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.163891298	3	1	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr6	116022253	12A2p6	cell line	sgMsh2	116022253	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.046	726	48	0	0	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon4:c.T824C:p.V275A,Tmcc1:NM_177412:exon6:c.T1784C:p.V595A"	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.193307685	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	116043426	12A2p6	cell line	sgMsh2	116043426	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.097	199	46	0	0	exonic	Tmcc1	frameshift deletion	Tmcc1:NM_177412:exon4:c.944delA:p.K315Rfs*10	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.407627074	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	80	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.82365883	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	208	77	11	0.142857143	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.43284112	2	0.9586811	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	87	34	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
M2	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	114	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.832063512	1	0.9665299	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M2	chr6	119320562	12A2p6	cell line	sgMsh2	119320562	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.177	80	0	0	NA	exonic	Lrtm2	nonsynonymous SNV	"Lrtm2:NM_001172207:exon4:c.T517C:p.S173P,Lrtm2:NM_172492:exon4:c.T517C:p.S173P"	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	1	0.6287115	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	120385706	12A2p6	cell line	sgMsh2	120385706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	214	162	18	0.111111111	exonic	Kdm5a	nonsynonymous SNV	Kdm5a:NM_145997:exon7:c.T863C:p.V288A	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.525292621	2	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	77	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.710195624	2	0.5717599	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	24	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	1	0.9679362	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M2	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.2313	134	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.972001466	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M2	chr6	121880894	12A2p6	cell line	sgMsh2	121880894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	159	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon27:c.A3345G:p.S1115S	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.69338626	2	0.9650863	CAC	synonymous	NA	NA	NA	NA
M2	chr6	121884382	12A2p6	cell line	sgMsh2	121884382	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	413	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon30:c.G3961A:p.E1321K	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.756421374	2	0.9381144	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr6	122079760	12A2p6	cell line	sgMsh2	122079760	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	105	0	0	NA	exonic	Mug2	synonymous SNV	Mug2:NM_008646:exon28:c.C3663A:p.S1221S	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.916110331	1	0.9979074	CCA	synonymous	NA	NA	NA	NA
M2	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	187	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.663969873	2	0.9976142	AAT	synonymous	NA	NA	NA	NA
M2	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	100	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.764826056	1	0.7163301	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	382	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.785837761	1	0.7941869	CTG	synonymous	NA	NA	NA	NA
M2	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	387	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.537899644	2	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	540	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	1.23E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	123839871	12A2p6	cell line	sgMsh2	123839871	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	362	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon3:c.G750T:p.K250N	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9926803	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	123851989	12A2p6	cell line	sgMsh2	123851989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	212	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon2:c.T325C:p.F109L	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.537899644	2	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	63	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.748016693	1	0.7044841	GAT	synonymous	NA	NA	NA	NA
M2	chr6	124317318	12A2p6	cell line	sgMsh2	124317318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	96	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon7:c.A1434G:p.R478R,Cd163:NM_053094:exon7:c.A1434G:p.R478R"	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.999789	GAC	synonymous	NA	NA	NA	NA
M2	chr6	124509053	12A2p6	cell line	sgMsh2	124509053	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	167	6	2	0.333333333	exonic	C1rl	nonsynonymous SNV	C1rl:NM_181344:exon6:c.A1382G:p.Y461C	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.798444784	1	0.09453112	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	36	34	2	0.058823529	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.991752469	1	0.9845025	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	73	94	13	0.138297872	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.815254148	1	0.9141183	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr6	124854888	12A2p6	cell line	sgMsh2	124854888	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	99	4	1	0.25	exonic	P3h3	synonymous SNV	P3h3:NM_013534:exon4:c.C933A:p.L311L	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.554709008	2	0.9974009	GGA	synonymous	NA	NA	NA	NA
M2	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	68	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	190	84	19	0.226190476	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.861479899	1	0.9981943	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	125171509	12A2p6	cell line	sgMsh2	125171509	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	89	51	0	0	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon25:c.T3158A:p.L1053Q	6qF2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.907705649	1	0.9947341	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	125343044	12A2p6	cell line	sgMsh2	125343044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	188	5	0	0	exonic	Scnn1a	synonymous SNV	Scnn1a:NM_011324:exon10:c.C1605A:p.S535S	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.508483257	2	0.9999895	CCT	synonymous	NA	NA	NA	NA
M2	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	62	1	0	0	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.458055166	2	0.9402633	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M2	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	254	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.483269211	2	0.9999861	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	128	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.668172214	2	0.9679942	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	126534398	12A2p6	cell line	sgMsh2	126534398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	176	0	0	NA	exonic	Kcna5	nonsynonymous SNV	Kcna5:NM_145983:exon1:c.A766G:p.I256V	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.655565191	2	0.997697	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	158	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.806849466	1	0.9353553	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	126739338	12A2p6	cell line	sgMsh2	126739338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	95	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T587C:p.L196S	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.504280916	2	0.997383	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	128	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.705993283	2	0.8581429	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	126966936	12A2p6	cell line	sgMsh2	126966936	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	31	10	0.322580645	exonic	D6Wsu163e	nonsynonymous SNV	D6Wsu163e:NM_138594:exon11:c.C1294T:p.L432F	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.819456489	1	0.9706151	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	39	1069	203	0.1898971	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.937122036	1	0.9745587	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	78	1630	285	0.174846626	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9887868	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	128521121	12A2p6	cell line	sgMsh2	128521121	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	178	0	0	NA	exonic	Pzp	frameshift deletion	Pzp:NM_007376:exon7:c.732delT:p.P245Lfs*1	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.626148804	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	190	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.689183919	2	0.9897249	GAC	synonymous	NA	NA	NA	NA
M2	chr6	130372845	12A2p6	cell line	sgMsh2	130372845	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	303	0	0	NA	exonic	Klra1	nonsynonymous SNV	Klra1:NM_016659:exon8:c.G629T:p.W210L	6qF3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.617744122	2	0.9999998	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr6	132361425	12A2p6	cell line	sgMsh2	132361425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	637	0	0	NA	exonic	Gm8882	nonsynonymous SNV	Gm8882:NM_001177588:exon3:c.T829C:p.Y277H	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.445448143	2	0.9999902	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Vardict	2	0.082	114	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.344591959	3	0.9747126	CCC	synonymous	NA	NA	NA	NA
M2	chr6	132657502	12A2p6	cell line	sgMsh2	132657502	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	316	0	0	NA	exonic	Tas2r120	synonymous SNV	Tas2r120:NM_207023:exon1:c.A546T:p.I182I	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.760623715	2	0.7745427	TAA	synonymous	NA	NA	NA	NA
M2	chr6	132700551	12A2p6	cell line	sgMsh2	132700551	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	119	0	0	NA	exonic	Tas2r121	nonsynonymous SNV	Tas2r121:NM_207024:exon1:c.G457A:p.E153K	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	2	0.5140218	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	132737275	12A2p6	cell line	sgMsh2	132737275	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	158	0	0	NA	exonic	Tas2r115	synonymous SNV	Tas2r115:NM_207020:exon1:c.C712T:p.L238L	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.647160509	2	0.9967168	AGG	synonymous	NA	NA	NA	NA
M2	chr6	132755465	12A2p6	cell line	sgMsh2	132755465	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	exonic	Tas2r124	nonsynonymous SNV	Tas2r124:NM_207026:exon1:c.C736T:p.L246F	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.634553486	2	0.9970231	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	157	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	1	0.9999971	GTG	synonymous	NA	NA	NA	NA
M2	chr6	133054936	12A2p6	cell line	sgMsh2	133054936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	104	0	0	NA	exonic	Tas2r140	synonymous SNV	Tas2r140:NM_021562:exon1:c.T858C:p.N286N	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.920312672	1	0.9981117	AAT	synonymous	NA	NA	NA	NA
M2	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	74	44	9	0.204545455	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.9990118	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	76	11	0.144736842	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.630351145	2	0.838601	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	62	74	9	0.121621622	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	2	0.9394665	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	174	139	14	0.100719424	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.441245802	2	0.976654	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	161	119	20	0.168067227	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	2	0.99995	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	104	13	1	0.076923077	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.487471552	2	0.9963948	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	135078672	12A2p6	cell line	sgMsh2	135078672	T	G	SNV	Mutect2;Strelka2	2	0.136	65	727	120	0.165061898	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon2:c.T116G:p.V39G	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.571518372	2	0.9507113	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr6	135309899	12A2p6	cell line	sgMsh2	135309899	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	80	58	0	0	exonic	Pbp2	nonsynonymous SNV	Pbp2:NM_029595:exon1:c.A449G:p.K150R	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.382413028	3	0.5831646	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	137	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.659767532	2	0.9845244	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	127	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.584125395	2	0.9990099	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	136781411	12A2p6	cell line	sgMsh2	136781411	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	108	0	0	NA	exonic	Gucy2c	stopgain	"Gucy2c:NM_001127318:exon1:c.C196T:p.R66X,Gucy2c:NM_145067:exon1:c.C196T:p.R66X"	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	1	1	0.9999091	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	136840018	12A2p6	cell line	sgMsh2	136840018	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.213	118	0	0	NA	exonic	BC049715	synonymous SNV	BC049715:NM_178776:exon3:c.G255A:p.P85P	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9972499	CGT	synonymous	NA	NA	NA	NA
M2	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.181	192	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.760623715	2	0.5185091	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M2	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	126	18	0	0	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.949729059	1	0.9997892	ATT	synonymous	NA	NA	NA	NA
M2	chr6	140528592	12A2p6	cell line	sgMsh2	140528592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	171	86	14	0.162790698	exonic	Plekha5	nonsynonymous SNV	Plekha5:NM_144920:exon7:c.G572A:p.R191H	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.743814352	2	0.6970231	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	118	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.91190799	1	0.9985758	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	229	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.895098626	1	0.9999455	AAA	synonymous	NA	NA	NA	NA
M2	chr6	141817719	12A2p6	cell line	sgMsh2	141817719	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	116	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon11:c.G1270T:p.G424X,Slco1a4:NM_030687:exon12:c.G1270T:p.G424X"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.6051371	2	0.995316	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	360	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.47486453	2	0.9999986	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	223	26	5	0.192307692	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.65136285	2	0.9997891	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	111	30	5	0.166666667	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.890896285	1	0.9958925	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr6	142376811	12A2p6	cell line	sgMsh2	142376811	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	84	30	4	0.133333333	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon4:c.T364C:p.C122R,Recql:NM_001204907:exon4:c.T364C:p.C122R,Recql:NM_001355511:exon4:c.T364C:p.C122R,Recql:NM_023042:exon4:c.T364C:p.C122R"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.386615369	3	0.5528023	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr6	142495623	12A2p6	cell line	sgMsh2	142495623	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.104	59	0	0	NA	exonic	Ldhb	synonymous SNV	"Ldhb:NM_001302765:exon5:c.C540A:p.G180G,Ldhb:NM_008492:exon5:c.C540A:p.G180G"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.437043461	2	0.8812197	TGC	synonymous	NA	NA	NA	NA
M2	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	256	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.575720713	2	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M2	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	194	23	1	0.043478261	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M2	chr6	143083209	12A2p6	cell line	sgMsh2	143083209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	242	18	3	0.166666667	exonic	C2cd5	synonymous SNV	"C2cd5:NM_001109688:exon4:c.T303C:p.A101A,C2cd5:NM_001362113:exon4:c.T303C:p.A101A,C2cd5:NM_001362114:exon4:c.T303C:p.A101A,C2cd5:NM_001362115:exon4:c.T303C:p.A101A,C2cd5:NM_001362116:exon4:c.T303C:p.A101A,C2cd5:NM_001362117:exon4:c.T303C:p.A101A,C2cd5:NM_029081:exon4:c.T303C:p.A101A,C2cd5:NM_029897:exon4:c.T303C:p.A101A"	6qG3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.659767532	2	0.9998259	CAG	synonymous	NA	NA	NA	NA
M2	chr6	146806453	12A2p6	cell line	sgMsh2	146806453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	209	20	4	0.2	exonic	Arntl2	synonymous SNV	"Arntl2:NM_001289679:exon2:c.A72G:p.T24T,Arntl2:NM_001289680:exon2:c.A72G:p.T24T,Arntl2:NM_172309:exon2:c.A72G:p.T24T"	6qG3	chr6-3373003-148425959	5	3	2	0.99	4.160317559	NA	1	0.697588601	2	0.990173	CAG	synonymous	NA	NA	NA	NA
M2	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1542	227	7	1	0.142857143	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M2	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	195	53	5	0.094339623	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr6	149327692	12A2p6	cell line	sgMsh2	149327692	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	201	110	16	0.145454545	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A2235C:p.E745D,Resf1:NM_026054:exon3:c.A2235C:p.E745D,Resf1:NM_001289661:exon4:c.A2235C:p.E745D"	6qG3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	103	132	30	0.227272727	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9998518	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	62	59	19	0.322033898	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9260795	CAG	synonymous	NA	NA	NA	NA
M2	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	76	4	1	0.25	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	4242170	12A2p6	cell line	sgMsh2	4242170	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	91	1	0	0	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon6:c.A812T:p.H271L	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	4282564	12A2p6	cell line	sgMsh2	4282564	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	231	0	0	NA	exonic	Pira6	nonsynonymous SNV	Pira6:NM_008848:exon8:c.A1771T:p.T591S	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.71E-08	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	322	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.03E-09	CCT	synonymous	NA	NA	NA	NA
M2	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	163	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	82	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.777433079	1	0.8042774	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	22	10	2	0.2	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.963277	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	43	45	8	0.177777778	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9802172	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	206	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.5915853	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	134	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9987026	TTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	391	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M2	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	265	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999992	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	6570274	12A2p6	cell line	sgMsh2	6570274	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	179	0	0	NA	exonic	Olfr1350	synonymous SNV	Olfr1350:NM_146389:exon1:c.C282A:p.A94A	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9999983	CCT	synonymous	NA	NA	NA	NA
M2	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	122	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.9700614	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	173	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9999981	CCC	synonymous	NA	NA	NA	NA
M2	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	151	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999956	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	6711236	12A2p6	cell line	sgMsh2	6711236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	158	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.A986G:p.E329G	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999973	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	10447059	12A2p6	cell line	sgMsh2	10447059	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	162	0	0	NA	exonic	Vmn1r67	synonymous SNV	Vmn1r67:NM_134229:exon1:c.T249C:p.I83I	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.264747481	3	0.9999986	TTT	synonymous	NA	NA	NA	NA
M2	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	14	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999725	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	10714750	12A2p6	cell line	sgMsh2	10714750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	155	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A879G:p.I293M,Nlrp4b:NM_172481:exon4:c.A879G:p.I293M"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999967	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr7	10714874	12A2p6	cell line	sgMsh2	10714874	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	144	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C1003A:p.P335T,Nlrp4b:NM_172481:exon4:c.C1003A:p.P335T"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	10725840	12A2p6	cell line	sgMsh2	10725840	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	114	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon8:c.C2368A:p.L790I,Nlrp4b:NM_172481:exon8:c.C2368A:p.L790I"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999404	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	10747860	12A2p6	cell line	sgMsh2	10747860	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	74	0	0	NA	exonic	Vmn1r71	stopgain	Vmn1r71:NM_145848:exon1:c.G900A:p.W300X	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9990118	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	147	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M2	chr7	12260071	12A2p6	cell line	sgMsh2	12260071	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	250	0	0	NA	exonic	Vmn1r81	synonymous SNV	Vmn1r81:NM_134210:exon1:c.C609A:p.V203V	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.142879593	3	1	AGA	synonymous	NA	NA	NA	NA
M2	chr7	12260471	12A2p6	cell line	sgMsh2	12260471	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	135	0	0	NA	exonic	Vmn1r81	nonsynonymous SNV	Vmn1r81:NM_134210:exon1:c.C209T:p.S70F	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.21852173	3	0.9999996	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr7	12416332	12A2p6	cell line	sgMsh2	12416332	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	177	5	0	0	exonic	Zfp551	synonymous SNV	Zfp551:NM_001033820:exon4:c.C1149T:p.H383H	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	GGT	synonymous	NA	NA	NA	NA
M2	chr7	13008258	12A2p6	cell line	sgMsh2	13008258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	63	12	1	0.083333333	exonic	Zbtb45	synonymous SNV	"Zbtb45:NM_001024699:exon2:c.T72C:p.N24N,Zbtb45:NM_001360833:exon2:c.T72C:p.N24N"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9709455	CAT	synonymous	NA	NA	NA	NA
M2	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	81	476	126	0.264705882	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	59	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9518241	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	23	377	82	0.217506631	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.760623715	1	0.8182833	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	152	109	30	0.275229358	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	39	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	TGA	synonymous	NA	NA	NA	NA
M2	chr7	17009894	12A2p6	cell line	sgMsh2	17009894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	60	93	27	0.290322581	exonic	Ppp5c	nonsynonymous SNV	Ppp5c:NM_011155:exon4:c.A614G:p.H205R	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.996328	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	234	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.41E-08	ACA	synonymous	NA	NA	NA	NA
M2	chr7	18180302	12A2p6	cell line	sgMsh2	18180302	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	138	0	0	NA	exonic	Igfl3	frameshift deletion	Igfl3:NM_001003393:exon3:c.400delA:p.S136Vfs*21	7qA2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	62	63	16	0.253968254	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9970392	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	19357876	12A2p6	cell line	sgMsh2	19357876	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	64	26	8	0.307692308	exonic	Cd3eap	nonsynonymous SNV	Cd3eap:NM_145822:exon3:c.G305A:p.G102D	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr7	19416872	12A2p6	cell line	sgMsh2	19416872	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	55	0	0	NA	exonic	Ckm	nonsynonymous SNV	Ckm:NM_007710:exon5:c.C635A:p.P212H	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	19433452	12A2p6	cell line	sgMsh2	19433452	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	29	47	13	0.276595745	exonic	Mark4	nonsynonymous SNV	"Mark4:NM_001368427:exon13:c.G1361A:p.G454D,Mark4:NM_172279:exon13:c.G1361A:p.G454D"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9772149	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	29	8	1	0.125	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9711684	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	108	217	53	0.244239631	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.976554	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	19792661	12A2p6	cell line	sgMsh2	19792661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	65	24	2	0.083333333	exonic	Cblc	nonsynonymous SNV	"Cblc:NM_001161844:exon3:c.G502T:p.V168L,Cblc:NM_023224:exon3:c.G502T:p.V168L"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.655565191	2	0.7606044	ACG	nonsynonymous	GCAC	8	GCACGCAC	NA
M2	chr7	19811121	12A2p6	cell line	sgMsh2	19811121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	78	122	25	0.204918033	exonic	Bcl3	nonsynonymous SNV	Bcl3:NM_033601:exon6:c.G812A:p.G271D	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9992536	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.226	139	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9998949	CAG	synonymous	NA	NA	NA	NA
M2	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	81	3	0	0	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993953	CGC	synonymous	C	5	CCCCC	NA
M2	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	31	24	6	0.25	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9801412	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	43	25	6	0.24	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9913518	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	33	113	37	0.327433628	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9826982	AGG	synonymous	NA	NA	NA	NA
M2	chr7	25714350	12A2p6	cell line	sgMsh2	25714350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	28	5	0	0	exonic	Ccdc97	nonsynonymous SNV	Ccdc97:NM_001368381:exon4:c.G905A:p.C302Y	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9755977	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	72	14	0.194444444	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9814629	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M2	chr7	25733308	12A2p6	cell line	sgMsh2	25733308	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	154	355	80	0.225352113	exonic	Hnrnpul1	nonsynonymous SNV	"Hnrnpul1:NM_001360789:exon9:c.C1028A:p.A343D,Hnrnpul1:NM_144922:exon9:c.C1328A:p.A443D"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999753	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	232	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.60E-08	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.802647125	1	0.9229838	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	70	16	5	0.3125	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9836783	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M2	chr7	28142376	12A2p6	cell line	sgMsh2	28142376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	152	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon6:c.T1735C:p.Y579H	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	99	161	42	0.260869565	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9304704	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	28370385	12A2p6	cell line	sgMsh2	28370385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	24	4	1	0.25	exonic	Plekhg2	synonymous SNV	"Plekhg2:NM_001083912:exon3:c.A219G:p.P73P,Plekhg2:NM_001290542:exon3:c.A219G:p.P73P,Plekhg2:NM_138752:exon3:c.A222G:p.P74P"	7qA3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9679362	CTG	synonymous	NA	NA	NA	NA
M2	chr7	28395855	12A2p6	cell line	sgMsh2	28395855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	160	85	20	0.235294118	exonic	Paf1	synonymous SNV	Paf1:NM_019458:exon6:c.T444C:p.N148N	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9909486	ATG	synonymous	NA	NA	NA	NA
M2	chr7	28568079	12A2p6	cell line	sgMsh2	28568079	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	59	118	27	0.228813559	exonic	Pak4	synonymous SNV	Pak4:NM_027470:exon3:c.G159A:p.L53L	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	TCA	synonymous	NA	NA	NA	NA
M2	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	44	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.798444784	1	0.865732	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	27	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9738687	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	78	408	113	0.276960784	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9987189	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	121	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9958984	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	26	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.9720207	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M2	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	25	1	0	0	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.970046	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	71	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	2	0.7162244	CTG	synonymous	NA	NA	NA	NA
M2	chr7	30530037	12A2p6	cell line	sgMsh2	30530037	C	T	SNV	Mutect2;Vardict	2	0.083	46	0	0	NA	exonic	Arhgap33	synonymous SNV	"Arhgap33:NM_001289670:exon11:c.G840A:p.R280R,Arhgap33:NM_001289682:exon12:c.G912A:p.R304R,Arhgap33:NM_178252:exon12:c.G912A:p.R304R"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.3487943	3	0.625511	GCC	synonymous	NA	NA	NA	NA
M2	chr7	30899690	12A2p6	cell line	sgMsh2	30899690	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	34	0	0	NA	exonic	Mag	synonymous SNV	"Mag:NM_001346085:exon11:c.G1725A:p.K575K,Mag:NM_001346084:exon12:c.G1725A:p.K575K,Mag:NM_001346089:exon12:c.G1599A:p.K533K,Mag:NM_001369262:exon12:c.G1725A:p.K575K"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9838526	GCT	synonymous	NA	NA	NA	NA
M2	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	65	609	99	0.162561576	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.785107	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	219	62	8	0.129032258	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	3.84E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	204	86	2	0.023255814	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.949729059	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2	chr7	34353671	12A2p6	cell line	sgMsh2	34353671	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	342	66	0.192982456	exonic	Lsm14a	synonymous SNV	"Lsm14a:NM_001360656:exon6:c.C778T:p.L260L,Lsm14a:NM_001360654:exon7:c.C955T:p.L319L,Lsm14a:NM_001360655:exon7:c.C955T:p.L319L,Lsm14a:NM_025948:exon7:c.C955T:p.L319L"	7qB1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	AGT	synonymous	AGTTTA	12	AGTTTAAGTTTA	NA
M2	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	58	63	24	0.380952381	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9969666	CAT	synonymous	NA	NA	NA	NA
M2	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	61	32	5	0.15625	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	GCT	synonymous	NA	NA	NA	NA
M2	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	17	31	9	0.290322581	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.9485964	ATA	synonymous	NA	NA	NA	NA
M2	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	109	5	1	0.2	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M2	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	126	58	14	0.24137931	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	93	28	9	0.321428571	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	38266161	12A2p6	cell line	sgMsh2	38266161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	97	89	24	0.269662921	exonic	Pop4	nonsynonymous SNV	Pop4:NM_025390:exon4:c.A331G:p.I111V	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.756421374	1	0.6635567	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	39536612	12A2p6	cell line	sgMsh2	39536612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	56	1	0	0	exonic	Zfp619	nonsynonymous SNV	Zfp619:NM_001004139:exon4:c.A2065G:p.T689A	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9808555	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	41427691	12A2p6	cell line	sgMsh2	41427691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	323	0	0	NA	exonic	Vmn2r57	synonymous SNV	Vmn2r57:NM_177764:exon3:c.T1050C:p.A350A	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.03E-09	AAG	synonymous	NA	NA	NA	NA
M2	chr7	42136332	12A2p6	cell line	sgMsh2	42136332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	161	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.T558C:p.L186L	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999978	TTT	synonymous	NA	NA	NA	NA
M2	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	339	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.01E-09	TAC	synonymous	NA	NA	NA	NA
M2	chr7	42195631	12A2p6	cell line	sgMsh2	42195631	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	262	0	0	NA	exonic	Vmn2r60	nonsynonymous SNV	Vmn2r60:NM_001105057:exon6:c.G2417A:p.G806E	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	2.83E-09	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	43528989	12A2p6	cell line	sgMsh2	43528989	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	86	0	0	NA	exonic	Cd33	nonsynonymous SNV	Cd33:NM_021293:exon6:c.A878C:p.K293T	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9971096	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	78	4	1	0.25	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9992536	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	79	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9943863	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	44254085	12A2p6	cell line	sgMsh2	44254085	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	43	0	0	NA	exonic	Acp4	nonsynonymous SNV	Acp4:NM_001195034:exon8:c.T804G:p.N268K	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.600934759	2	0.7224953	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	44313756	12A2p6	cell line	sgMsh2	44313756	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	113	0	0	NA	exonic	Shank1	nonsynonymous SNV	Shank1:NM_001034115:exon4:c.G464A:p.R155H	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.727004988	2	0.6451735	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	47	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9934558	CAG	synonymous	NA	NA	NA	NA
M2	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	70	63	17	0.26984127	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9986917	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	42	87	25	0.287356322	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9907285	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	137	82	21	0.256097561	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	29	20	8	0.4	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9772149	AAG	synonymous	NA	NA	NA	NA
M2	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	69	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.441245802	2	0.9096303	CAT	synonymous	NA	NA	NA	NA
M2	chr7	45355231	12A2p6	cell line	sgMsh2	45355231	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	88	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon11:c.C1305T:p.D435D	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.99963	TGT	synonymous	NA	NA	NA	NA
M2	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	122	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.999966	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	131	1	1	1	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	37	17	2	0.117647059	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.92506	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	86	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995743	CCT	synonymous	CTG	8	CTGCTGCT	NA
M2	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.16	86	92	22	0.239130435	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.672374555	2	0.8327712	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.242	67	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.242	67	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	ATA	synonymous	NA	NA	NA	NA
M2	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	46	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.9565271	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	50062724	12A2p6	cell line	sgMsh2	50062724	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	125	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon3:c.G291A:p.P97P	7qB4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9999345	CGT	synonymous	NA	NA	NA	NA
M2	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	108	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	GTG	synonymous	GT	8	GTGTGTGT	NA
M2	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	157	135	29	0.214814815	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9959994	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	72	104	3	0.028846154	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.655565191	2	0.8124487	AAG	synonymous	NA	NA	NA	NA
M2	chr7	56729688	12A2p6	cell line	sgMsh2	56729688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	116	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon8:c.T965C:p.V322A	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9998842	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	58786559	12A2p6	cell line	sgMsh2	58786559	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	62	13	1	0.076923077	exonic	Atp10a	frameshift deletion	Atp10a:NM_009728:exon6:c.1096delT:p.F367Lfs*2	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr7	58807466	12A2p6	cell line	sgMsh2	58807466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	132	32	5	0.15625	exonic	Atp10a	synonymous SNV	Atp10a:NM_009728:exon13:c.A2712G:p.T904T	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999832	CAG	synonymous	NA	NA	NA	NA
M2	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	146	177	34	0.192090395	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999937	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	68	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.647160509	2	0.8143928	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.42	18	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2	chr7	64377170	12A2p6	cell line	sgMsh2	64377170	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.205	81	92	22	0.239130435	exonic	Mphosph10	nonsynonymous SNV	Mphosph10:NM_026483:exon10:c.A1894C:p.K632Q	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9754017	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	65326371	12A2p6	cell line	sgMsh2	65326371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	136	309	59	0.190938511	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon11:c.T1298C:p.V433A,Tjp1:NM_009386:exon11:c.T1298C:p.V433A"	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.714397965	2	0.837548	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	280	12	1	0.083333333	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.52E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	70354853	12A2p6	cell line	sgMsh2	70354853	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	64	112	26	0.232142857	exonic	Nr2f2	nonsynonymous SNV	"Nr2f2:NM_009697:exon3:c.G1049A:p.R350K,Nr2f2:NM_183261:exon3:c.G650A:p.R217K"	7qC	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	75610298	12A2p6	cell line	sgMsh2	75610298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	156	33	8	0.242424242	exonic	Akap13	nonsynonymous SNV	Akap13:NM_029332:exon7:c.T2669C:p.V890A	7qD1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.999966	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	75866202	12A2p6	cell line	sgMsh2	75866202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	62	16	10	0.625	exonic	Klhl25	synonymous SNV	"Klhl25:NM_001122780:exon2:c.T855C:p.S285S,Klhl25:NM_029652:exon2:c.T855C:p.S285S,Klhl25:NM_182782:exon2:c.T855C:p.S285S"	7qD1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	GTC	synonymous	NA	NA	NA	NA
M2	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	116	186	52	0.279569892	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	CAG	synonymous	AGA	8	AGAAGAAG	NA
M2	chr7	79297032	12A2p6	cell line	sgMsh2	79297032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	76	432	105	0.243055556	exonic	Abhd2	nonsynonymous SNV	Abhd2:NM_018811:exon3:c.A19G:p.T7A	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9936044	GAC	nonsynonymous	C	5	CCCCC	NA
M2	chr7	79737506	12A2p6	cell line	sgMsh2	79737506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	93	23	6	0.260869565	exonic	Pex11a	synonymous SNV	Pex11a:NM_011068:exon3:c.T577C:p.L193L	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9941738	AAG	synonymous	NA	NA	NA	NA
M2	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	101	5	1	0.2	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9846871	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.625	6	41	15	0.365853659	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.8922006	GCC	synonymous	NA	NA	NA	NA
M2	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	44	64	15	0.234375	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	80362923	12A2p6	cell line	sgMsh2	80362923	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.2	49	73	15	0.205479452	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon13:c.A1841G:p.Y614C	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9285331	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	80384012	12A2p6	cell line	sgMsh2	80384012	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	60	6	1	0.166666667	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon5:c.G490A:p.D164N	7qD2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	2	0.6261016	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	98	833	229	0.274909964	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998167	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	36	22	2	0.090909091	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9706209	CAT	synonymous	NA	NA	NA	NA
M2	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	65	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9981424	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	120	1	0	0	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9998243	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	5	3	0.6	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9907285	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	134	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	GAG	synonymous	NA	NA	NA	NA
M2	chr7	84282158	12A2p6	cell line	sgMsh2	84282158	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	93	1	0	0	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon11:c.A1103C:p.K368T	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.996047	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	84856921	12A2p6	cell line	sgMsh2	84856921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	309	0	0	NA	exonic	Olfr291	nonsynonymous SNV	Olfr291:NM_146415:exon3:c.T557C:p.V186A	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.07E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	177	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.999963	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	85233707	12A2p6	cell line	sgMsh2	85233707	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	280	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon3:c.A836G:p.H279R	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.52E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	85619322	12A2p6	cell line	sgMsh2	85619322	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	225	0	0	NA	exonic	Vmn2r71	synonymous SNV	Vmn2r71:NM_001384948:exon3:c.T720G:p.T240T	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9999541	CTG	synonymous	NA	NA	NA	NA
M2	chr7	85619787	12A2p6	cell line	sgMsh2	85619787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	440	0	0	NA	exonic	Vmn2r71	synonymous SNV	Vmn2r71:NM_001384948:exon3:c.T1185C:p.A395A	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M2	chr7	85623685	12A2p6	cell line	sgMsh2	85623685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	208	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon6:c.T1694G:p.L565R	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.600934759	2	0.9999872	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	281	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.48E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M2	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	117	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.882491604	1	0.9953566	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	86230507	12A2p6	cell line	sgMsh2	86230507	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	128	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C575A:p.A192D	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999777	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	86335497	12A2p6	cell line	sgMsh2	86335497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	110	0	0	NA	exonic	Olfr307	nonsynonymous SNV	Olfr307:NM_146617:exon1:c.A898G:p.R300G	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.441245802	2	0.9467007	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	86465907	12A2p6	cell line	sgMsh2	86465907	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	229	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.C495A:p.S165S	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9999988	CCT	synonymous	NA	NA	NA	NA
M2	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	222	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	3.13E-08	CTG	synonymous	NA	NA	NA	NA
M2	chr7	86664660	12A2p6	cell line	sgMsh2	86664660	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	89	0	0	NA	exonic	Olfr293	stopgain	Olfr293:NM_001011752:exon1:c.G997T:p.E333X	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.273	172	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M2	chr7	86695071	12A2p6	cell line	sgMsh2	86695071	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	291	0	0	NA	exonic	Olfr292	nonsynonymous SNV	Olfr292:NM_146620:exon2:c.G614T:p.S205I	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	1.35E-09	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr7	86719691	12A2p6	cell line	sgMsh2	86719691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	85	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon18:c.G2128A:p.A710T,Folh1:NM_016770:exon19:c.G2227A:p.A743T"	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	86773248	12A2p6	cell line	sgMsh2	86773248	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	150	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon2:c.G180A:p.K60K,Folh1:NM_016770:exon2:c.G180A:p.K60K"	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9627658	TCT	synonymous	NA	NA	NA	NA
M2	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	250	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	5.24E-09	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr7	88430453	12A2p6	cell line	sgMsh2	88430453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	52	61	17	0.278688525	exonic	Rab38	nonsynonymous SNV	Rab38:NM_028238:exon1:c.C52A:p.L18M	7qD3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	9.30E-07	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	TAA	synonymous	A	5	AAAAA	NA
M2	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	ATT	nonsynonymous	A	5	AAAAA	NA
M2	chr7	96852361	12A2p6	cell line	sgMsh2	96852361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	7	5	0.714285714	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon23:c.C3771A:p.N1257K,Tenm4:NM_011858:exon23:c.C3660A:p.N1220K,Tenm4:NM_001310762:exon24:c.C3768A:p.N1256K"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9669376	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	144	1	0	0	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr7	97513530	12A2p6	cell line	sgMsh2	97513530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	69	59	4	0.06779661	exonic	Ints4	nonsynonymous SNV	"Ints4:NM_001358012:exon12:c.T1351A:p.S451T,Ints4:NM_027256:exon12:c.T1378A:p.S460T"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	32	28	0.875	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9946923	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	85	46	34	0.739130435	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	98098259	12A2p6	cell line	sgMsh2	98098259	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.237	105	41	0	0	exonic	Myo7a	frameshift insertion	"Myo7a:NM_001256083:exon4:c.364dupC:p.H122Pfs*6,Myo7a:NM_001256081:exon5:c.397dupC:p.H133Pfs*6,Myo7a:NM_001256082:exon5:c.382dupC:p.H128Pfs*6,Myo7a:NM_008663:exon5:c.397dupC:p.H133Pfs*6"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.99595481	NA	NA	GTG	frameshift	G	5	GGGGG	1
M2	chr7	98194438	12A2p6	cell line	sgMsh2	98194438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	12	0	0	NA	exonic	B3gnt6	nonsynonymous SNV	B3gnt6:NM_001081167:exon2:c.A314G:p.K105R	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.9283116	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	31	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9801412	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	99118230	12A2p6	cell line	sgMsh2	99118230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	96	20	7	0.35	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon2:c.T193C:p.Y65H	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	99347079	12A2p6	cell line	sgMsh2	99347079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	62	570	160	0.280701754	exonic	Serpinh1	nonsynonymous SNV	"Serpinh1:NM_001111044:exon4:c.T797C:p.L266P,Serpinh1:NM_009825:exon4:c.T797C:p.L266P,Serpinh1:NM_001111043:exon5:c.T797C:p.L266P,Serpinh1:NM_001285776:exon5:c.T797C:p.L266P"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9977078	GAG	nonsynonymous	GAT	8	GATGATGA	NA
M2	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	52	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9271215	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	89	28	6	0.214285714	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	CAG	synonymous	CAG	8	CAGCAGCA	NA
M2	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	49	5	1	0.2	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9943084	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	102134772	12A2p6	cell line	sgMsh2	102134772	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	90	114	30	0.263157895	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon23:c.C3352T:p.P1118S,Nup98:NM_001287165:exon23:c.C3301T:p.P1101S,Nup98:NM_022979:exon23:c.C3352T:p.P1118S"	7qE2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9905488	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	86	154	32	0.207792208	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.705993283	2	0.6557145	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	123	145	46	0.317241379	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999683	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	94	139	38	0.273381295	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	GTT	synonymous	NA	NA	NA	NA
M2	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	119	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9994041	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	146	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999937	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	186	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9998857	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr7	103098528	12A2p6	cell line	sgMsh2	103098528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	446	0	0	NA	exonic	Olfr585	synonymous SNV	Olfr585:NM_147087:exon1:c.T786C:p.P262P	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M2	chr7	103212255	12A2p6	cell line	sgMsh2	103212255	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	306	0	0	NA	exonic	Olfr593	nonsynonymous SNV	Olfr593:NM_146380:exon1:c.G394T:p.A132S	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.08E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	103220442	12A2p6	cell line	sgMsh2	103220442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	220	0	0	NA	exonic	Olfr594	synonymous SNV	Olfr594:NM_207143:exon1:c.T723C:p.T241T	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	3.59E-08	CTT	synonymous	NA	NA	NA	NA
M2	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	373	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	131	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.989258	GTA	synonymous	NA	NA	NA	NA
M2	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	125	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999725	ATG	synonymous	NA	NA	NA	NA
M2	chr7	103470424	12A2p6	cell line	sgMsh2	103470424	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	173	0	0	NA	exonic	Olfr608	synonymous SNV	Olfr608:NM_146756:exon1:c.C384T:p.C128C	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999991	GCA	synonymous	NA	NA	NA	NA
M2	chr7	103584362	12A2p6	cell line	sgMsh2	103584362	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	640	0	0	NA	exonic	Olfr617	nonsynonymous SNV	Olfr617:NM_146841:exon1:c.A339G:p.I113M	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.676576896	2	1.24E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	103881482	12A2p6	cell line	sgMsh2	103881482	T	C	SNV	Mutect2;Vardict	2	0.039	338	0	0	NA	exonic	Olfr66	nonsynonymous SNV	Olfr66:NM_013618:exon1:c.A760G:p.I254V	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.163891298	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr7	104179892	12A2p6	cell line	sgMsh2	104179892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	193	0	0	NA	exonic	Olfr648	nonsynonymous SNV	Olfr648:NM_146751:exon1:c.G515A:p.R172K	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	353	11	0	0	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.966538423	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999404	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	179	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999796	TCC	synonymous	NA	NA	NA	NA
M2	chr7	104768693	12A2p6	cell line	sgMsh2	104768693	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	350	0	0	NA	exonic	Usp17le	nonsynonymous SNV	Usp17le:NM_001256973:exon3:c.A1241G:p.K414R	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.159688957	3	1	CTT	nonsynonymous	T	5	TTTTT	NA
M2	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	345	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.01E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	82	48	11	0.229166667	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9902509	GAT	synonymous	NA	NA	NA	NA
M2	chr7	105408054	12A2p6	cell line	sgMsh2	105408054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	74	0	0	NA	exonic	Cnga4	nonsynonymous SNV	Cnga4:NM_001033317:exon6:c.A1672G:p.T558A	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.997237	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	84	39	1	0.025641026	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.634553486	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	220	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	3.59E-08	CCT	synonymous	NA	NA	NA	NA
M2	chr7	106891917	12A2p6	cell line	sgMsh2	106891917	C	A	SNV	Mutect2;Strelka2	2	0.341	15	0	0	NA	exonic	Olfr707	nonsynonymous SNV	Olfr707:NM_001005570:exon1:c.G191T:p.R64I	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.9412634	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	178	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9996694	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	107128759	12A2p6	cell line	sgMsh2	107128759	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	286	0	0	NA	exonic	Olfr715	synonymous SNV	Olfr715:NM_146780:exon1:c.C633T:p.V211V	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.756421374	2	0.7946237	AGA	synonymous	NA	NA	NA	NA
M2	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	205	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	107697678	12A2p6	cell line	sgMsh2	107697678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	101	50	21	0.42	exonic	Ppfibp2	stopgain	"Ppfibp2:NM_001357438:exon3:c.G148T:p.E50X,Ppfibp2:NM_001357436:exon4:c.G367T:p.E123X,Ppfibp2:NM_001357437:exon4:c.G367T:p.E123X,Ppfibp2:NM_001163557:exon6:c.G598T:p.E200X,Ppfibp2:NM_008905:exon6:c.G598T:p.E200X"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9846871	AGA	nonsynonymous	AAG	8	AAGAAGAA	NA
M2	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	315	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.9999993	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M2	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	290	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	2.27E-08	AAA	synonymous	AATG	8	AATGAATG	NA
M2	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	193	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	ATG	nonsynonymous	G	5	GGGGG	NA
M2	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9998831	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	217	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	4.41E-08	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	108255891	12A2p6	cell line	sgMsh2	108255891	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	301	0	0	NA	exonic	Olfr488	frameshift deletion	Olfr488:NM_146732:exon1:c.246delC:p.S83Vfs*70	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.987550128	NA	NA	TGG	frameshift	NA	NA	NA	-1
M2	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	303	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	108367789	12A2p6	cell line	sgMsh2	108367789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	382	0	0	NA	exonic	Olfr494	nonsynonymous SNV	Olfr494:NM_146737:exon1:c.T298C:p.C100R	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr7	108465736	12A2p6	cell line	sgMsh2	108465736	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	204	0	0	NA	exonic	Olfr498	frameshift deletion	Olfr498:NM_146307:exon1:c.411delA:p.M139Cfs*10	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.254	292	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	1.22E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	109340453	12A2p6	cell line	sgMsh2	109340453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	183	0	0	NA	exonic	Stk33	synonymous SNV	Stk33:NM_054103:exon4:c.A240G:p.R80R	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	TTC	synonymous	NA	NA	NA	NA
M2	chr7	110093180	12A2p6	cell line	sgMsh2	110093180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	149	49	10	0.204081633	exonic	Zfp143	synonymous SNV	"Zfp143:NM_001374618:exon15:c.A1797G:p.L599L,Zfp143:NM_009281:exon15:c.A1794G:p.L598L"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.832063512	1	0.9795045	TAG	synonymous	NA	NA	NA	NA
M2	chr7	110887999	12A2p6	cell line	sgMsh2	110887999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	70	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon16:c.C2141T:p.A714V,Mrvi1:NM_194464:exon17:c.C1946T:p.A649V"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9986917	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	67	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9849935	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	111075668	12A2p6	cell line	sgMsh2	111075668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	2479	584	0.235578862	exonic	Eif4g2	nonsynonymous SNV	"Eif4g2:NM_001040131:exon14:c.G1341T:p.Q447H,Eif4g2:NM_013507:exon15:c.G1455T:p.Q485H"	7qE3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993042	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	85	5	1	0.2	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	112351369	12A2p6	cell line	sgMsh2	112351369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	72	36	8	0.222222222	exonic	Mical2	synonymous SNV	"Mical2:NM_177282:exon20:c.A2529G:p.V843V,Mical2:NM_001193305:exon25:c.A3210G:p.V1070V"	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	TAC	synonymous	NA	NA	NA	NA
M2	chr7	112567838	12A2p6	cell line	sgMsh2	112567838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	140	149	34	0.228187919	exonic	Parva	nonsynonymous SNV	Parva:NM_020606:exon6:c.G617A:p.R206Q	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9984616	CGA	nonsynonymous	NA	NA	NA	NA
M2	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	214	540	128	0.237037037	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	114036656	12A2p6	cell line	sgMsh2	114036656	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	84	2	0	0	exonic	Spon1	frameshift deletion	Spon1:NM_145584:exon15:c.2104delG:p.G703Vfs*40	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	168	317	77	0.242902208	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999987	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	114791266	12A2p6	cell line	sgMsh2	114791266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	14	0	0	NA	exonic	Insc	nonsynonymous SNV	Insc:NM_173767:exon3:c.T371C:p.I124T	7qF1	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9372259	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	111	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.684981578	2	0.891631	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	119768785	12A2p6	cell line	sgMsh2	119768785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	112	3	2	0.666666667	exonic	Acsm3	nonsynonymous SNV	"Acsm3:NM_212441:exon4:c.C223T:p.P75S,Acsm3:NM_212442:exon4:c.C223T:p.P75S,Acsm3:NM_016870:exon5:c.C223T:p.P75S"	7qF2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	171	23	7	0.304347826	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999943	AAC	synonymous	NA	NA	NA	NA
M2	chr7	122990233	12A2p6	cell line	sgMsh2	122990233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	105	66	8	0.121212121	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon10:c.A1143G:p.S381S	7qF2	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.994179	CAG	synonymous	CTCA	8	CTCACTCA	NA
M2	chr7	123490214	12A2p6	cell line	sgMsh2	123490214	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	156	0	0	NA	exonic	Zkscan2	frameshift deletion	Zkscan2:NM_001081329:exon5:c.833delA:p.K278Rfs*5	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2	chr7	126115914	12A2p6	cell line	sgMsh2	126115914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	128	104	21	0.201923077	exonic	Xpo6	nonsynonymous SNV	"Xpo6:NM_001311143:exon15:c.A1898G:p.H633R,Xpo6:NM_028816:exon15:c.A1895G:p.H632R"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9980672	GTG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M2	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	97	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9997434	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr7	126495466	12A2p6	cell line	sgMsh2	126495466	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	76	363	74	0.203856749	exonic	Atxn2l	nonsynonymous SNV	"Atxn2l:NM_001347658:exon14:c.G1600T:p.G534W,Atxn2l:NM_001361487:exon14:c.G1840T:p.G614W,Atxn2l:NM_183020:exon14:c.G1858T:p.G620W"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	126564507	12A2p6	cell line	sgMsh2	126564507	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	120	918	203	0.221132898	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon4:c.C266T:p.A89V	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9969707	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	84	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995101	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	102	7	2	0.285714286	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9996762	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	32	7	0	0	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	2	1	1	0.9814629	GTT	synonymous	NA	NA	NA	NA
M2	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	132	156	29	0.185897436	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.710195624	2	0.8488502	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr7	127925144	12A2p6	cell line	sgMsh2	127925144	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	229	67	21	0.313432836	exonic	Kat8	nonsynonymous SNV	"Kat8:NM_001360699:exon10:c.G719A:p.S240N,Kat8:NM_026370:exon10:c.G1193A:p.S398N"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9999999	AGC	nonsynonymous	CAT	8	CATCATCA	NA
M2	chr7	128101649	12A2p6	cell line	sgMsh2	128101649	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	68	0	0	NA	exonic	Itgam	stopgain	"Itgam:NM_001082960:exon14:c.C1513T:p.Q505X,Itgam:NM_008401:exon14:c.C1510T:p.Q504X"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9984947	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	74	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.8972501	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;Vardict	2	0.045	147	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.189105344	3	8.05E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	47	29	6	0.206896552	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9934558	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	80	141	37	0.262411348	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.78163542	1	0.8223779	CAC	synonymous	NA	NA	NA	NA
M2	chr7	129379467	12A2p6	cell line	sgMsh2	129379467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	71	0	0	NA	exonic	Plpp4	nonsynonymous SNV	Plpp4:NM_001080963:exon6:c.C566A:p.A189D	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9987803	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	95	178	49	0.275280899	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	165	2	0	0	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9999934	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr7	132759722	12A2p6	cell line	sgMsh2	132759722	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.099	33	3	0	0	exonic	Fam53b	synonymous SNV	"Fam53b:NM_001347630:exon3:c.G486T:p.G162G,Fam53b:NM_001381858:exon4:c.G576T:p.G192G,Fam53b:NM_001381859:exon4:c.G576T:p.G192G,Fam53b:NM_175268:exon4:c.G576T:p.G192G,Fam53b:NM_212473:exon4:c.G576T:p.G192G"	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.416031756	2	0.7390877	CCC	synonymous	C	5	CCCCC	NA
M2	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	109	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999153	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M2	chr7	135700725	12A2p6	cell line	sgMsh2	135700725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	195	49	11	0.224489796	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A2579G:p.D860G	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9999994	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr7	135704402	12A2p6	cell line	sgMsh2	135704402	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	207	65	15	0.230769231	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon9:c.A1845T:p.K615N	7qF3	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.945526718	1	0.9999963	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.840468194	1	0.9438632	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	150	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999952	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2344	64	2	0	0	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.985028723	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M2	chr7	141637544	12A2p6	cell line	sgMsh2	141637544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	204	2	0	0	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.T6900C:p.T2300T	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M2	chr7	141638109	12A2p6	cell line	sgMsh2	141638109	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	337	0	0	NA	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.C6335A:p.P2112H	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.634553486	2	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	119	15	4	0.266666667	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	100	14	5	0.357142857	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.663969873	2	9.94E-08	GTT	synonymous	NA	NA	NA	NA
M2	chr7	141809820	12A2p6	cell line	sgMsh2	141809820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	171	32	17	0.53125	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon31:c.A6864G:p.S2288S	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999907	CAG	synonymous	NA	NA	NA	NA
M2	chr7	143611739	12A2p6	cell line	sgMsh2	143611739	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	128	149	27	0.181208054	exonic	Tnfrsf26	nonsynonymous SNV	Tnfrsf26:NM_175649:exon6:c.G572A:p.C191Y	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999777	ACA	nonsynonymous	NA	NA	NA	NA
M2	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	44	5	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9919335	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	39	4	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.9885792	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr7	144409743	12A2p6	cell line	sgMsh2	144409743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	35	0	0	NA	exonic	Shank2	nonsynonymous SNV	"Shank2:NM_001081370:exon10:c.T1087C:p.F363L,Shank2:NM_001113373:exon15:c.T1717C:p.F573L"	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9676869	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	122	266	80	0.30075188	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.999966	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	113	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-3489139-145323643	4	2	2	0.99	4.160317559	NA	1	1	1	0.999936	GTA	synonymous	NA	NA	NA	NA
M2	chr8	3441230	12A2p6	cell line	sgMsh2	3441230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	146	48	12	0.25	exonic	Arhgef18	synonymous SNV	"Arhgef18:NM_133962:exon9:c.T1080C:p.A360A,Arhgef18:NM_001370668:exon18:c.T2232C:p.A744A"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999937	CTG	synonymous	NA	NA	NA	NA
M2	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	205	65	11	0.169230769	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9784107	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	145	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999932	GTA	synonymous	NA	NA	NA	NA
M2	chr8	4214160	12A2p6	cell line	sgMsh2	4214160	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	90	3	0	0	exonic	Prr36	nonsynonymous SNV	Prr36:NM_207203:exon6:c.C1505T:p.T502M	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9993198	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr8	4736366	12A2p6	cell line	sgMsh2	4736366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	98	23	3	0.130434783	exonic	Shcbp1	nonsynonymous SNV	Shcbp1:NM_011369:exon13:c.G1735A:p.G579R	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.899300967	1	0.9951469	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	330	166	44	0.265060241	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	1.04E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M2	chr8	11561704	12A2p6	cell line	sgMsh2	11561704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	115	202	0	0	exonic	Ing1	nonsynonymous SNV	"Ing1:NM_001302457:exon2:c.G141T:p.Q47H,Ing1:NM_001302458:exon2:c.G141T:p.Q47H,Ing1:NM_001302459:exon2:c.G141T:p.Q47H,Ing1:NM_001302460:exon2:c.G141T:p.Q47H,Ing1:NM_011919:exon2:c.G423T:p.Q141H,Ing1:NM_001302451:exon3:c.G315T:p.Q105H"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8545685	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	232	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9999993	AAG	synonymous	NA	NA	NA	NA
M2	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	97	38	2	0.052631579	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998033	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	151	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999956	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	74	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.886693944	1	0.9841909	TCG	synonymous	NA	NA	NA	NA
M2	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	121	83	18	0.21686747	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999635	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	93	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9976453	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	15931049	12A2p6	cell line	sgMsh2	15931049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon54:c.A8368G:p.I2790V	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.995283	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr8	16127215	12A2p6	cell line	sgMsh2	16127215	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	66	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon26:c.C4033T:p.L1345L	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9982681	AGC	synonymous	NA	NA	NA	NA
M2	chr8	16157071	12A2p6	cell line	sgMsh2	16157071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	149	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon25:c.A3943G:p.T1315A	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7216533	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr8	16211738	12A2p6	cell line	sgMsh2	16211738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	56	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon18:c.A2744G:p.K915R	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.634553486	2	0.7591718	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	86	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9995743	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	21084576	12A2p6	cell line	sgMsh2	21084576	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	77	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.C135A:p.S45S	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9991993	CCT	synonymous	NA	NA	NA	NA
M2	chr8	21794432	12A2p6	cell line	sgMsh2	21794432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	111	0	0	NA	exonic	Defb1	synonymous SNV	Defb1:NM_007843:exon2:c.T66C:p.V22V	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999264	TTG	synonymous	NA	NA	NA	NA
M2	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	85	4	0	0	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.748016693	1	0.6389297	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr8	23114805	12A2p6	cell line	sgMsh2	23114805	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	85	25	1	0.04	exonic	Ank1	frameshift deletion	"Ank1:NM_001277280:exon27:c.3084delT:p.F1029Lfs*13,Ank1:NM_001277281:exon27:c.2973delT:p.F992Lfs*13,Ank1:NM_001277284:exon27:c.2973delT:p.F992Lfs*13,Ank1:NM_001110783:exon28:c.3108delT:p.F1037Lfs*13,Ank1:NM_001277286:exon28:c.3021delT:p.F1008Lfs*13,Ank1:NM_001277289:exon28:c.3021delT:p.F1008Lfs*13,Ank1:NM_031158:exon28:c.3021delT:p.F1008Lfs*13"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.588327736	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2	chr8	23446221	12A2p6	cell line	sgMsh2	23446221	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.355	68	0	0	NA	exonic	Sfrp1	frameshift deletion	Sfrp1:NM_013834:exon3:c.678delC:p.K228Rfs*5	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	193	1	1	1	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	162	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.991752469	NA	NA	GAG	frameshift	NA	NA	NA	-1
M2	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	64	2	0	0	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9980075	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	30	7	0.233333333	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.848872876	1	0.9816592	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	93	33	4	0.121212121	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr8	27152599	12A2p6	cell line	sgMsh2	27152599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	25	6	0.24	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2171G:p.N724S	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999517	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	74	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9990118	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	28891398	12A2p6	cell line	sgMsh2	28891398	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	110	0	0	NA	exonic	Unc5d	synonymous SNV	"Unc5d:NM_001347498:exon2:c.A210G:p.A70A,Unc5d:NM_001347499:exon2:c.A210G:p.A70A,Unc5d:NM_001347500:exon2:c.A210G:p.A70A,Unc5d:NM_001347501:exon2:c.A210G:p.A70A,Unc5d:NM_153135:exon2:c.A210G:p.A70A"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.210117048	3	0.9999955	GTG	synonymous	NA	NA	NA	NA
M2	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	85	101	13	0.128712871	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9995433	GGG	synonymous	NA	NA	NA	NA
M2	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	77	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	GTT	synonymous	NA	NA	NA	NA
M2	chr8	40795968	12A2p6	cell line	sgMsh2	40795968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	456	0	0	NA	exonic	Adam20	nonsynonymous SNV	Adam20:NM_001009548:exon2:c.T1114C:p.C372R	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	174	94	23	0.244680851	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999991	CTA	synonymous	NA	NA	NA	NA
M2	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	438	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	43521315	12A2p6	cell line	sgMsh2	43521315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	293	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A649G:p.T217A	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	1.21E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	43652529	12A2p6	cell line	sgMsh2	43652529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	548	0	0	NA	exonic	Adam34	synonymous SNV	Adam34:NM_145745:exon2:c.T78C:p.S26S	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9999993	CAG	synonymous	NA	NA	NA	NA
M2	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	515	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	44952522	12A2p6	cell line	sgMsh2	44952522	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	203	369	104	0.281842818	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon1:c.T2309A:p.M770K	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999859	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	131	386	45	0.116580311	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999819	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	173	30	10	0.333333333	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	0.9637321	CAC	synonymous	NA	NA	NA	NA
M2	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	147	59	12	0.203389831	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	TTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	86	107	3	0.028037383	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M2	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	77	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9991121	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	192	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	166	4	1	0.25	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.874086922	1	0.9983911	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	178	5	2	0.4	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.954389	TGT	nonsynonymous	NA	NA	NA	NA
M2	chr8	56547410	12A2p6	cell line	sgMsh2	56547410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	159	68	13	0.191176471	exonic	Cep44	nonsynonymous SNV	Cep44:NM_001009951:exon2:c.C67T:p.P23S	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999975	GGG	nonsynonymous	NA	NA	NA	NA
M2	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	144	135	35	0.259259259	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	ACG	nonsynonymous	NA	NA	NA	NA
M2	chr8	57777212	12A2p6	cell line	sgMsh2	57777212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	86	5	3	0.6	exonic	Galntl6	synonymous SNV	Galntl6:NM_175032:exon12:c.A1776G:p.L592L	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8530349	CTA	synonymous	NA	NA	NA	NA
M2	chr8	57777220	12A2p6	cell line	sgMsh2	57777220	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	86	6	0	0	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon12:c.A1768G:p.T590A	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.264747481	3	0.9985166	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	150	45	12	0.266666667	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999952	ATA	synonymous	NA	NA	NA	NA
M2	chr8	61685007	12A2p6	cell line	sgMsh2	61685007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	87	40	11	0.275	exonic	Palld	synonymous SNV	"Palld:NM_001293773:exon9:c.T546C:p.P182P,Palld:NM_001081390:exon10:c.T1713C:p.P571P,Palld:NM_001293772:exon10:c.T1713C:p.P571P"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.584125395	2	0.9851297	GAG	synonymous	G	5	GGGGG	NA
M2	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	43	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9913518	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	66681233	12A2p6	cell line	sgMsh2	66681233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	124	0	0	NA	exonic	Npy5r	nonsynonymous SNV	"Npy5r:NM_001358957:exon2:c.A907G:p.I303V,Npy5r:NM_001358958:exon2:c.A907G:p.I303V,Npy5r:NM_016708:exon2:c.A907G:p.I303V"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	ATG	nonsynonymous	ATGA	8	ATGAATGA	NA
M2	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	142	33	3	0.090909091	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9999595	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	112	18	5	0.277777778	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	69894228	12A2p6	cell line	sgMsh2	69894228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	83	302	70	0.231788079	exonic	Ndufa13	nonsynonymous SNV	"Ndufa13:NM_001382215:exon5:c.A428G:p.Y143C,Ndufa13:NM_023312:exon5:c.A428G:p.Y143C"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9994745	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	157	624	136	0.217948718	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999971	CGA	synonymous	NA	NA	NA	NA
M2	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	51	47	9	0.191489362	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9950504	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	74	68	12	0.176470588	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9567873	CTG	synonymous	NA	NA	NA	NA
M2	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	128	1	1	1	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999777	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	71507878	12A2p6	cell line	sgMsh2	71507878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	21	0	0	NA	exonic	Plvap	nonsynonymous SNV	Plvap:NM_032398:exon3:c.A893G:p.N298S	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9607086	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr8	71579598	12A2p6	cell line	sgMsh2	71579598	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	81	13	3	0.230769231	exonic	Slc27a1	nonsynonymous SNV	"Slc27a1:NM_001357182:exon2:c.G362A:p.R121H,Slc27a1:NM_001357180:exon3:c.G362A:p.R121H,Slc27a1:NM_001357181:exon3:c.G362A:p.R121H,Slc27a1:NM_011977:exon4:c.G362A:p.R121H"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.9988134	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	59	36	13	0.361111111	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.752219033	1	0.7321095	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M2	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	76	35	6	0.171428571	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	38	302	53	0.175496689	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.777433079	1	0.8290542	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	76909079	12A2p6	cell line	sgMsh2	76909079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	154	41	15	0.365853659	exonic	Nr3c2	nonsynonymous SNV	Nr3c2:NM_001083906:exon2:c.T808C:p.S270P	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999964	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr8	79693470	12A2p6	cell line	sgMsh2	79693470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	317	23	0.072555205	exonic	Abce1	synonymous SNV	Abce1:NM_015751:exon10:c.A876G:p.V292V	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.999998	GTA	synonymous	NA	NA	NA	NA
M2	chr8	82864094	12A2p6	cell line	sgMsh2	82864094	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	19	0	0	NA	exonic	Rnf150	nonsynonymous SNV	Rnf150:NM_177378:exon1:c.C85A:p.L29M	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	2	1	1	0.9550432	CCT	nonsynonymous	TCTGC	10	TCTGCTCTGC	NA
M2	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	104	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.979145446	1	0.9997526	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	104	135	39	0.288888889	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	84029863	12A2p6	cell line	sgMsh2	84029863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	40	0	0	NA	exonic	Palm3	nonsynonymous SNV	Palm3:NM_028877:exon7:c.A2003G:p.D668G	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9893454	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	32	9	2	0.222222222	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8501177	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	84868907	12A2p6	cell line	sgMsh2	84868907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	56	155	35	0.225806452	exonic	Farsa	nonsynonymous SNV	Farsa:NM_025648:exon13:c.T1430G:p.L477R	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9965109	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	54	78	18	0.230769231	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9959869	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	85355192	12A2p6	cell line	sgMsh2	85355192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	127	0	0	NA	exonic	Mylk3	synonymous SNV	"Mylk3:NM_001297612:exon4:c.T966A:p.A322A,Mylk3:NM_175441:exon4:c.T1365A:p.A455A"	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	CAG	synonymous	NA	NA	NA	NA
M2	chr8	85553951	12A2p6	cell line	sgMsh2	85553951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	184	437	104	0.23798627	exonic	Dnaja2	nonsynonymous SNV	Dnaja2:NM_019794:exon2:c.A104G:p.Y35C	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.806849466	1	0.9441874	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	85810588	12A2p6	cell line	sgMsh2	85810588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	267	58	0.217228464	exonic	Itfg1	synonymous SNV	Itfg1:NM_028007:exon6:c.A609G:p.P203P	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.999789	GTG	synonymous	NA	NA	NA	NA
M2	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	145	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999932	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	62	63	17	0.26984127	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.659767532	2	0.7183993	TTT	nonsynonymous	G	5	GGGGG	NA
M2	chr8	90932823	12A2p6	cell line	sgMsh2	90932823	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	164	32	5	0.15625	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon1:c.A410C:p.N137T,Chd9:NM_177224:exon3:c.A410C:p.N137T"	8qC4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999982	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	178	10	1	0.1	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-92679958	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9999938	ATC	synonymous	NA	NA	NA	NA
M2	chr8	92871192	12A2p6	cell line	sgMsh2	92871192	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.224	133	6	0	0	exonic	Lpcat2	frameshift insertion	"Lpcat2:NM_001357374:exon4:c.585dupA:p.N197Kfs*4,Lpcat2:NM_173014:exon4:c.585dupA:p.N197Kfs*4"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.941324377	NA	NA	CGA	frameshift	A	5	AAAAA	1
M2	chr8	92886646	12A2p6	cell line	sgMsh2	92886646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	8	0	0	exonic	Lpcat2	synonymous SNV	"Lpcat2:NM_001357374:exon7:c.T813C:p.A271A,Lpcat2:NM_001357375:exon8:c.T240C:p.A80A,Lpcat2:NM_173014:exon9:c.T933C:p.A311A"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	CTG	synonymous	NA	NA	NA	NA
M2	chr8	92972891	12A2p6	cell line	sgMsh2	92972891	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	148	0	0	NA	exonic	Slc6a2	frameshift deletion	Slc6a2:NM_009209:exon3:c.546delC:p.N184Tfs*57	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2	chr8	93036005	12A2p6	cell line	sgMsh2	93036005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	144	0	0	NA	exonic	Ces1a	nonsynonymous SNV	Ces1a:NM_001013764:exon5:c.A637G:p.S213G	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	137	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	CAA	synonymous	NA	NA	NA	NA
M2	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	80	43	15	0.348837209	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9982357	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	94087388	12A2p6	cell line	sgMsh2	94087388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	118	13	6	0.461538462	exonic	Bbs2	nonsynonymous SNV	Bbs2:NM_026116:exon5:c.A601G:p.T201A	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.7206978	GTC	nonsynonymous	CTCTGT	13	CTCTGTCTCTGTC	NA
M2	chr8	94475964	12A2p6	cell line	sgMsh2	94475964	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	76	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon4:c.G691A:p.A231T	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991411	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	53	1	0	0	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9589644	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	81	108	14	0.12962963	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.731207329	1	0.5429628	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	94749812	12A2p6	cell line	sgMsh2	94749812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	183	0	0	NA	exonic	Ccl22	nonsynonymous SNV	Ccl22:NM_009137:exon3:c.A205G:p.T69A	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	93	282	53	0.187943262	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	CTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	209	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9934547	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	102634635	12A2p6	cell line	sgMsh2	102634635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	99	0	0	NA	exonic	Cdh11	synonymous SNV	Cdh11:NM_009866:exon13:c.T2070C:p.F690F	8qD1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9998047	TAA	synonymous	NA	NA	NA	NA
M2	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	145	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999932	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	40	209	51	0.244019139	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9893454	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	105	163	12	0.073619632	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998878	CTT	synonymous	NA	NA	NA	NA
M2	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	291	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	1.24E-09	GAC	synonymous	NA	NA	NA	NA
M2	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	109	221	37	0.167420814	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9962236	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	60	21	1	0.047619048	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.997363	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	82	40	3	0.075	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.722802647	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	110	3	0	0	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.999921	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	134	42	5	0.119047619	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.798444784	1	0.8959805	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr8	105937264	12A2p6	cell line	sgMsh2	105937264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	82	22	4	0.181818182	exonic	Psmb10	synonymous SNV	Psmb10:NM_013640:exon4:c.T360C:p.R120R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994363	TAC	synonymous	NA	NA	NA	NA
M2	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	105	17	7	0.411764706	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9989939	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	62	142	29	0.204225352	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.760623715	1	0.7580712	GGC	synonymous	NA	NA	NA	NA
M2	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	39	25	6	0.24	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.907705649	1	0.963181	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	93	16	4	0.25	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	69	77	21	0.272727273	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	107392767	12A2p6	cell line	sgMsh2	107392767	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	105	2	1	0.5	exonic	Nqo1	synonymous SNV	Nqo1:NM_008706:exon3:c.G177A:p.E59E	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998878	GCT	synonymous	NA	NA	NA	NA
M2	chr8	108948006	12A2p6	cell line	sgMsh2	108948007	AG	-	Deletion	Strelka2;Vardict	2	0.2258	31	21	3	0.142857143	exonic	Zfhx3	frameshift deletion	Zfhx3:NM_007496:exon9:c.5687_5688del:p.R1899Gfs*8	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.948888591	NA	NA	CAG	frameshift	AG	10	AGAGAGAGAG	-2
M2	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	152	37	11	0.297297297	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	GAG	synonymous	NA	NA	NA	NA
M2	chr8	109541735	12A2p6	cell line	sgMsh2	109541735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	58	0	0	NA	exonic	Pmfbp1	synonymous SNV	Pmfbp1:NM_019938:exon20:c.C2913T:p.I971I	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	2	1	1	0.9969666	TCT	synonymous	NA	NA	NA	NA
M2	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	64	23	0.359375	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997003	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M2	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	341	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	9.88E-09	ACA	synonymous	NA	NA	NA	NA
M2	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	141	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.785837761	1	0.8299013	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	58	71	11	0.154929577	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.748016693	1	7.70E-07	TAC	synonymous	NA	NA	NA	NA
M2	chr8	110835582	12A2p6	cell line	sgMsh2	110835582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	86	263	48	0.182509506	exonic	Sf3b3	synonymous SNV	Sf3b3:NM_133953:exon9:c.A1200G:p.E400E	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9963274	GTT	synonymous	NA	NA	NA	NA
M2	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	89	585	129	0.220512821	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	111070742	12A2p6	cell line	sgMsh2	111070742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	82	0	0	NA	exonic	Clec18a	nonsynonymous SNV	Clec18a:NM_181549:exon11:c.G1264A:p.A422T	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994363	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	24	5	0.208333333	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.991776	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	112803180	12A2p6	cell line	sgMsh2	112803180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	59	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon13:c.C2019A:p.N673K	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr8	119236859	12A2p6	cell line	sgMsh2	119236859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	69	21	1	0.047619048	exonic	Cdh13	nonsynonymous SNV	Cdh13:NM_019707:exon9:c.A1177G:p.T393A	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9985967	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	119870316	12A2p6	cell line	sgMsh2	119870316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	2	0	0	exonic	Klhl36	nonsynonymous SNV	Klhl36:NM_146219:exon3:c.T755C:p.M252T	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9924764	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr8	121556348	12A2p6	cell line	sgMsh2	121556348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	66	113	18	0.159292035	exonic	Fbxo31	nonsynonymous SNV	Fbxo31:NM_133765:exon6:c.T694C:p.F232L	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.718600306	1	8.22E-07	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	77	42	10	0.238095238	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9991993	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	78	162	33	0.203703704	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9175124	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M2	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	41	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.009939273	GCG	nonsynonymous	NA	NA	NA	NA
M2	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	46	56	16	0.285714286	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9735392	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	54	85	24	0.282352941	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9959869	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	50	1	1	1	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.962336082	1	0.9901192	GGC	synonymous	NA	NA	NA	NA
M2	chr8	123235758	12A2p6	cell line	sgMsh2	123235758	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	21	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon1:c.C63T:p.G21G,Spata2l:NM_001357301:exon2:c.C63T:p.G21G,Spata2l:NM_030176:exon2:c.C63T:p.G21G"	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9607086	GGC	synonymous	GCCGC	10	GCCGCGCCGC	NA
M2	chr8	123313047	12A2p6	cell line	sgMsh2	123313047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	93	5	0	0	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon5:c.T487C:p.F163L	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	103	2	1	0.5	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998709	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M2	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	61	57	12	0.210526316	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	CCC	nonsynonymous	NA	NA	NA	NA
M2	chr8	123962010	12A2p6	cell line	sgMsh2	123962010	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	82	18	1	0.055555556	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon8:c.A1526G:p.Y509C	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.949729059	1	0.9977844	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	71	22	4	0.181818182	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9920537	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	173	51	17	0.333333333	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr8	124576246	12A2p6	cell line	sgMsh2	124576246	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	56	0	0	NA	exonic	Capn9	nonsynonymous SNV	Capn9:NM_023709:exon1:c.G102T:p.Q34H	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9965109	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr8	124614557	12A2p6	cell line	sgMsh2	124614557	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.199	87	0	0	NA	exonic	Capn9	nonsynonymous SNV	Capn9:NM_023709:exon17:c.C1801T:p.L601F	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9567262	TCT	nonsynonymous	NA	NA	NA	NA
M2	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.205	89	155	33	0.212903226	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	0.861479899	1	0.9796388	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	38	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.160317559	NA	1	1	1	0.9877585	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	71	58	12	0.206896552	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr9	3421314	12A2p6	cell line	sgMsh2	3421314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	72	56	19	0.339285714	exonic	Cwf19l2	nonsynonymous SNV	Cwf19l2:NM_027545:exon6:c.C590A:p.P197Q	9qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M2	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	241	9	5	0.555555556	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr9	4424385	12A2p6	cell line	sgMsh2	4424385	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	94	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon16:c.T2479A:p.L827M,Gria4:NM_019691:exon16:c.T2479A:p.L827M"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9993944	AAG	nonsynonymous	CCAAGC	13	CCAAGCCCAAGCC	NA
M2	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	94	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997572	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	4793823	12A2p6	cell line	sgMsh2	4793823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	95	0	0	NA	exonic	Gria4	synonymous SNV	"Gria4:NM_001113180:exon3:c.T234C:p.A78A,Gria4:NM_001113181:exon3:c.T234C:p.A78A,Gria4:NM_019691:exon3:c.T234C:p.A78A"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997737	CAG	synonymous	NA	NA	NA	NA
M2	chr9	5323725	12A2p6	cell line	sgMsh2	5323725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	125	0	0	NA	exonic	Casp4	nonsynonymous SNV	"Casp4:NM_001379319:exon3:c.A110G:p.D37G,Casp4:NM_001379322:exon3:c.A110G:p.D37G,Casp4:NM_001379318:exon4:c.A293G:p.D98G,Casp4:NM_001379320:exon4:c.A461G:p.D154G,Casp4:NM_001379323:exon4:c.A221G:p.D74G,Casp4:NM_007609:exon4:c.A461G:p.D154G"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.974943105	1	0.999922	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9998774	ATG	synonymous	GAT	8	GATGATGA	NA
M2	chr9	5354540	12A2p6	cell line	sgMsh2	5354540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	185	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon8:c.A908G:p.N303S	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	62	9	1	0.111111111	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.600934759	2	0.8953648	TCA	synonymous	NA	NA	NA	NA
M2	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	143	322	87	0.270186335	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999922	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	8649343	12A2p6	cell line	sgMsh2	8649343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	124	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.A1553G:p.K518R	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999705	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	9048879	12A2p6	cell line	sgMsh2	9048879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	126	0	0	NA	exonic	Arhgap42	nonsynonymous SNV	"Arhgap42:NM_001372569:exon6:c.A639G:p.I213M,Arhgap42:NM_001372570:exon6:c.A615G:p.I205M,Arhgap42:NM_001372568:exon7:c.A711G:p.I237M"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999743	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr9	13812639	12A2p6	cell line	sgMsh2	13812639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	138	79	19	0.240506329	exonic	Cep57	synonymous SNV	Cep57:NM_026665:exon8:c.T882G:p.A294A	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999889	CAG	synonymous	NA	NA	NA	NA
M2	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.248	144	70	15	0.214285714	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	15007577	12A2p6	cell line	sgMsh2	15007577	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	159	29	8	0.275862069	exonic	Panx1	nonsynonymous SNV	Panx1:NM_019482:exon4:c.C985A:p.L329I	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.91190799	1	0.9997338	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr9	15862819	12A2p6	cell line	sgMsh2	15862819	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	107	0	0	NA	exonic	Mtnr1b	nonsynonymous SNV	Mtnr1b:NM_145712:exon2:c.T943A:p.F315I	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	15924949	12A2p6	cell line	sgMsh2	15924949	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	92	0	0	NA	exonic	Fat3	synonymous SNV	Fat3:NM_001080814:exon23:c.A12270C:p.T4090T	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.739612011	1	0.5544943	CTG	synonymous	NA	NA	NA	NA
M2	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	118	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.999955	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	16021450	12A2p6	cell line	sgMsh2	16021450	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.252	139	0	0	NA	exonic	Fat3	frameshift insertion	Fat3:NM_001080814:exon7:c.4197dupG:p.N1400Efs*2	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TTC	frameshift	C	5	CCCCC	1
M2	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	114	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2	chr9	18498644	12A2p6	cell line	sgMsh2	18498644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	102	0	0	NA	exonic	Muc16	nonsynonymous SNV	Muc16:NM_001378248:exon84:c.T26108C:p.V8703A	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	18815670	12A2p6	cell line	sgMsh2	18815670	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	117	0	0	NA	exonic	Olfr828	nonsynonymous SNV	Olfr828:NM_146605:exon1:c.G623T:p.G208V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999517	GCC	nonsynonymous	NA	NA	NA	NA
M2	chr9	19137655	12A2p6	cell line	sgMsh2	19137655	A	G	SNV	Mutect2;Vardict	2	0.03	206	0	0	NA	exonic	Olfr837	nonsynonymous SNV	Olfr837:NM_146565:exon1:c.A661G:p.I221V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.126070229	3	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	19497316	12A2p6	cell line	sgMsh2	19497316	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	152	0	0	NA	exonic	Olfr851	stopgain	Olfr851:NM_146905:exon1:c.C567A:p.C189X	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9840524	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	181	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999995	TAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	20027241	12A2p6	cell line	sgMsh2	20027241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	exonic	Olfr866	synonymous SNV	Olfr866:NM_146558:exon1:c.C696A:p.P232P	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	AGG	synonymous	NA	NA	NA	NA
M2	chr9	20101115	12A2p6	cell line	sgMsh2	20101115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	0	0	NA	exonic	Olfr868	nonsynonymous SNV	Olfr868:NM_146559:exon2:c.G355T:p.A119S	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9999937	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	95	37	8	0.216216216	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9997737	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	68	27	3	0.111111111	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.769028397	1	0.7817673	CAA	nonsynonymous	A	5	AAAAA	NA
M2	chr9	21244606	12A2p6	cell line	sgMsh2	21244606	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.137	29	2	1	0.5	exonic	S1pr5	nonsynonymous SNV	S1pr5:NM_053190:exon3:c.T523A:p.C175S	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.575720713	2	0.00933746	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	21348598	12A2p6	cell line	sgMsh2	21348598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	143	131	30	0.229007634	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon20:c.C1895T:p.P632L,Slc44a2:NM_001359227:exon20:c.C1895T:p.P632L,Slc44a2:NM_152808:exon20:c.C1901T:p.P634L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.811051807	1	0.9416743	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	57	267	66	0.247191011	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.78163542	1	0.8302019	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	52	193	53	0.274611399	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9953845	GCT	synonymous	NA	NA	NA	NA
M2	chr9	22380304	12A2p6	cell line	sgMsh2	22380304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	107	133	29	0.218045113	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon3:c.T227G:p.I76S	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9998482	AAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	93	26	3	0.115384615	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9997395	TAC	synonymous	NA	NA	NA	NA
M2	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	139	40	7	0.175	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999897	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M2	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	25	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.970046	TCC	nonsynonymous	NA	NA	NA	NA
M2	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	38	10	0.263157895	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9998023	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	30959337	12A2p6	cell line	sgMsh2	30959337	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	68	0	0	NA	exonic	Adamts8	nonsynonymous SNV	"Adamts8:NM_001326292:exon7:c.A952G:p.T318A,Adamts8:NM_013906:exon8:c.A2107G:p.T703A"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.668172214	2	0.7318248	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	836	189	0.226076555	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9907285	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	13	2	0.153846154	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9990758	CGC	synonymous	NA	NA	NA	NA
M2	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	217	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	4.41E-08	TAG	synonymous	NA	NA	NA	NA
M2	chr9	32397430	12A2p6	cell line	sgMsh2	32397430	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	157	0	0	NA	exonic	Kcnj1	nonsynonymous SNV	"Kcnj1:NM_001168354:exon2:c.A1149C:p.E383D,Kcnj1:NM_019659:exon2:c.A1089C:p.E363D"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.853075217	1	0.9938102	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	61	330	85	0.257575758	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.987550128	1	0.9968376	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	173	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.790040102	1	0.8575959	AGG	synonymous	NA	NA	NA	NA
M2	chr9	36747934	12A2p6	cell line	sgMsh2	36747934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	73	600	163	0.271666667	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon10:c.A1108G:p.M370V	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9989399	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	59	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	37427460	12A2p6	cell line	sgMsh2	37427460	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	66	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon6:c.C951A:p.S317R	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9901308	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	118	1	1	1	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.999955	TAT	synonymous	NA	NA	NA	NA
M2	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	262	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	2.83E-09	GTA	synonymous	NA	NA	NA	NA
M2	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	130	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	142	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999917	AGA	nonsynonymous	NA	NA	NA	NA
M2	chr9	38116085	12A2p6	cell line	sgMsh2	38116085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	370	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T288C:p.C96C	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M2	chr9	38116526	12A2p6	cell line	sgMsh2	38116526	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	291	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T729C:p.H243H	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.928717354	1	0.9999998	ATG	synonymous	NA	NA	NA	NA
M2	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	443	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
M2	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	232	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999986	TTT	synonymous	NA	NA	NA	NA
M2	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	220	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	3.59E-08	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	38736126	12A2p6	cell line	sgMsh2	38736126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	85	47	11	0.234042553	exonic	Vwa5a	synonymous SNV	"Vwa5a:NM_001145957:exon14:c.G1800A:p.Q600Q,Vwa5a:NM_172767:exon15:c.G1800A:p.Q600Q"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9973067	AGG	synonymous	NA	NA	NA	NA
M2	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	254	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	4.20E-09	GCA	nonsynonymous	NA	NA	NA	NA
M2	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	257	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	3.60E-09	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	38855407	12A2p6	cell line	sgMsh2	38855407	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	347	0	0	NA	exonic	Olfr26	nonsynonymous SNV	Olfr26:NM_146783:exon1:c.T344A:p.L115Q	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	5.07E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2	chr9	38930439	12A2p6	cell line	sgMsh2	38930439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	242	0	0	NA	exonic	Olfr930	synonymous SNV	Olfr930:NM_146272:exon1:c.A267G:p.K89K	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	8.44E-09	AAA	synonymous	A	5	AAAAA	NA
M2	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	242	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	8.44E-09	CCT	synonymous	NA	NA	NA	NA
M2	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	238	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9999946	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr9	39046794	12A2p6	cell line	sgMsh2	39046794	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	178	0	0	NA	exonic	Olfr936	synonymous SNV	Olfr936:NM_207139:exon1:c.C624T:p.F208F	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999993	CGA	synonymous	A	5	AAAAA	NA
M2	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	167	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999986	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	39185005	12A2p6	cell line	sgMsh2	39185005	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	256	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.G826A:p.V276M	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.937122036	1	0.9999994	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr9	39257729	12A2p6	cell line	sgMsh2	39257729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	168	0	0	NA	exonic	Olfr945	synonymous SNV	Olfr945:NM_146506:exon1:c.A951G:p.E317E	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.647160509	2	0.997947	CTT	synonymous	NA	NA	NA	NA
M2	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	225	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	2.56E-08	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	39319215	12A2p6	cell line	sgMsh2	39319215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	305	0	0	NA	exonic	Olfr948	nonsynonymous SNV	Olfr948:NM_001011756:exon1:c.A398G:p.N133S	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	1.09E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	39550717	12A2p6	cell line	sgMsh2	39550717	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	110	0	0	NA	exonic	Olfr958	synonymous SNV	Olfr958:NM_146330:exon1:c.C153T:p.S51S	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9695031	AGG	synonymous	NA	NA	NA	NA
M2	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	222	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	3.13E-08	CTG	synonymous	NA	NA	NA	NA
M2	chr9	39593690	12A2p6	cell line	sgMsh2	39593690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	104	0	0	NA	exonic	AW551984	nonsynonymous SNV	"AW551984:NM_001199556:exon13:c.T1505C:p.L502P,AW551984:NM_001359951:exon13:c.T1505C:p.L502P,AW551984:NM_178737:exon13:c.T1505C:p.L502P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	TAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	39597134	12A2p6	cell line	sgMsh2	39597134	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	127	0	0	NA	exonic	AW551984	nonsynonymous SNV	"AW551984:NM_001199556:exon10:c.C1085T:p.A362V,AW551984:NM_001359951:exon10:c.C1085T:p.A362V,AW551984:NM_178737:exon10:c.C1085T:p.A362V"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.983347787	1	0.9999517	CGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	253	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	4.44E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	40101259	12A2p6	cell line	sgMsh2	40101259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	116	0	0	NA	exonic	Olfr984	nonsynonymous SNV	Olfr984:NM_146608:exon1:c.C230T:p.T77I	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999482	AGT	nonsynonymous	NA	NA	NA	NA
M2	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	41	3	0	0	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.009939273	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	138	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999889	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M2	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	19	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9550432	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr9	42359237	12A2p6	cell line	sgMsh2	42359237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	107	0	0	NA	exonic	Tecta	synonymous SNV	"Tecta:NM_001324548:exon12:c.G3774A:p.L1258L,Tecta:NM_009347:exon12:c.G3774A:p.L1258L,Tecta:NM_001378602:exon13:c.G3774A:p.L1258L"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999025	GCA	synonymous	GCAG	8	GCAGGCAG	NA
M2	chr9	42521067	12A2p6	cell line	sgMsh2	42521067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	26	0	0	NA	exonic	Grik4	nonsynonymous SNV	Grik4:NM_175481:exon21:c.A2633G:p.E878G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9720207	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	147	97	20	0.206185567	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999941	CAG	synonymous	NA	NA	NA	NA
M2	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	63	10	3	0.3	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9269643	CAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	34	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9838526	ACG	synonymous	NA	NA	NA	NA
M2	chr9	44389377	12A2p6	cell line	sgMsh2	44389377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	64	352	89	0.252840909	exonic	Hyou1	synonymous SNV	Hyou1:NM_021395:exon23:c.A2742G:p.P914P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9980075	CAC	synonymous	GCCACG	15	GCCACGGCCACGGCC	NA
M2	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	152	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M2	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	49	27	5	0.185185185	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.743814352	1	0.7290726	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	94	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.836265853	1	0.9610783	TGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	45684311	12A2p6	cell line	sgMsh2	45684311	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	72	1	0	0	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon10:c.G2160T:p.K720N	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9988629	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	80	23	8	0.347826087	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9993513	CTC	synonymous	NA	NA	NA	NA
M2	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	59	6	1	0.166666667	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.466459848	2	0.009525339	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	49115581	12A2p6	cell line	sgMsh2	49115581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	55	0	0	NA	exonic	Tmprss5	synonymous SNV	"Tmprss5:NM_001359460:exon12:c.A1323G:p.V441V,Tmprss5:NM_030709:exon12:c.A1293G:p.V431V"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.996258	TAG	synonymous	NA	NA	NA	NA
M2	chr9	49416251	12A2p6	cell line	sgMsh2	49416251	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	66	0	0	NA	exonic	Ankk1	nonsynonymous SNV	"Ankk1:NM_001376951:exon8:c.G1630A:p.V544M,Ankk1:NM_172922:exon8:c.G1627A:p.V543M"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9295605	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr9	50581694	12A2p6	cell line	sgMsh2	50581694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	104	6	2	0.333333333	exonic	Il18	nonsynonymous SNV	"Il18:NM_001357221:exon7:c.A559G:p.T187A,Il18:NM_008360:exon8:c.A559G:p.T187A"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998797	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	51233222	12A2p6	cell line	sgMsh2	51233222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	90	0	0	NA	exonic	Pou2af1	synonymous SNV	Pou2af1:NM_011136:exon4:c.A435G:p.P145P	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	CAC	synonymous	NA	NA	NA	NA
M2	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	147	7	0	0	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.890896285	1	0.9987866	TTT	nonsynonymous	NA	NA	NA	NA
M2	chr9	53372471	12A2p6	cell line	sgMsh2	53372471	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	132	10	4	0.4	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.C851T:p.P284L	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999832	CCT	nonsynonymous	NA	NA	NA	NA
M2	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	56	0	0	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.958133741	1	0.9999937	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	53504074	12A2p6	cell line	sgMsh2	53504074	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	291	26	1	0.038461538	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon17:c.A2516G:p.D839G	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.168093639	3	1	ATC	nonsynonymous	TCA	8	TCATCATC	NA
M2	chr9	54027626	12A2p6	cell line	sgMsh2	54027626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	190	0	0	NA	exonic	Tnfaip8l3	nonsynonymous SNV	Tnfaip8l3:NM_001033535:exon2:c.T64C:p.F22L	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9999663	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	78	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9992536	CAT	synonymous	NA	NA	NA	NA
M2	chr9	54598427	12A2p6	cell line	sgMsh2	54598427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	264	221	56	0.253393665	exonic	Idh3a	nonsynonymous SNV	Idh3a:NM_029573:exon7:c.A646G:p.R216G	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	2.59E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	54764968	12A2p6	cell line	sgMsh2	54764968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	114	0	0	NA	exonic	Crabp1	frameshift deletion	"Crabp1:NM_001284507:exon1:c.67delT:p.L23Wfs*2,Crabp1:NM_013496:exon1:c.67delT:p.L23Wfs*2"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.86568224	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2	chr9	55430309	12A2p6	cell line	sgMsh2	55430309	A	G	SNV	Mutect2;Vardict	2	0.267	12	2	1	0.5	exonic	Tmem266	nonsynonymous SNV	"Tmem266:NM_001357568:exon9:c.A428G:p.Q143R,Tmem266:NM_172923:exon9:c.A803G:p.Q268R"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9283116	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	56258360	12A2p6	cell line	sgMsh2	56258360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	121	50	10	0.2	exonic	Peak1	synonymous SNV	Peak1:NM_172924:exon4:c.A2283G:p.K761K	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.916110331	1	0.9989359	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M2	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	721	93	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.100856183	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M2	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	148	73	16	0.219178082	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999945	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M2	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	36	19	3	0.157894737	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9859386	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	57792568	12A2p6	cell line	sgMsh2	57792568	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	37	2	0	0	exonic	Arid3b	nonsynonymous SNV	"Arid3b:NM_019689:exon8:c.C1655T:p.T552I,Arid3b:NM_001379353:exon9:c.C1655T:p.T552I"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9868797	GGT	nonsynonymous	NA	NA	NA	NA
M2	chr9	58033686	12A2p6	cell line	sgMsh2	58033686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	51	0	0	NA	exonic	Ccdc33	synonymous SNV	"Ccdc33:NM_001166282:exon12:c.G1827A:p.Q609Q,Ccdc33:NM_001311085:exon12:c.G1272A:p.Q424Q,Ccdc33:NM_029212:exon12:c.G1272A:p.Q424Q"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9950504	TCT	synonymous	NA	NA	NA	NA
M2	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	103	2	0	0	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.878289263	1	0.991736	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	108	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.987550128	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	148	10	2	0.2	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999945	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	133	2757	416	0.150888647	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999843	GGA	nonsynonymous	NA	NA	NA	NA
M2	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	140	90	17	0.188888889	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999904	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	56	28	4	0.142857143	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9620324	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	21	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9607086	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	64949308	12A2p6	cell line	sgMsh2	64949308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	137	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon2:c.A316G:p.I106V	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	ATG	nonsynonymous	TGCTA	10	TGCTATGCTA	NA
M2	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	191	67	15	0.223880597	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.827861171	1	0.9852921	TAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	110	23	5	0.217391304	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9993256	GTA	synonymous	NA	NA	NA	NA
M2	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	135	26	13	0.5	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9999864	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M2	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	163	17	3	0.176470588	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999981	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	67	26	1	0.038461538	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9983854	GGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	87	118	57	0.483050847	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9996031	GCT	synonymous	NA	NA	NA	NA
M2	chr9	70802224	12A2p6	cell line	sgMsh2	70802224	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	144	3	0	0	exonic	Lipc	synonymous SNV	"Lipc:NM_001324473:exon8:c.T985C:p.L329L,Lipc:NM_008280:exon8:c.T1240C:p.L414L,Lipc:NM_001324472:exon9:c.T1240C:p.L414L"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.163891298	3	2.22E-09	AAC	synonymous	NA	NA	NA	NA
M2	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	127	184	38	0.206521739	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	GTT	nonsynonymous	NA	NA	NA	NA
M2	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	119	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	120	99	36	0.363636364	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999609	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	99	16	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998291	AAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	75009121	12A2p6	cell line	sgMsh2	75009121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	97	11	1	0.090909091	exonic	Fam214a	nonsynonymous SNV	"Fam214a:NM_153584:exon5:c.T1022C:p.V341A,Fam214a:NM_001113283:exon6:c.T1001C:p.V334A,Fam214a:NM_001359816:exon6:c.T1001C:p.V334A"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.815254148	1	0.9293224	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	174	43	11	0.255813953	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999991	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	150	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.701790942	2	0.9318123	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	144	30525	7039	0.230597871	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999927	TTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	78577206	12A2p6	cell line	sgMsh2	78577206	A	-	Deletion	Strelka2;Vardict	2	0.3182	22	51	1	0.019607843	exonic	Slc17a5	frameshift deletion	Slc17a5:NM_172773:exon3:c.349delT:p.Y117Tfs*27	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M2	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	134	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999854	GTT	synonymous	NA	NA	NA	NA
M2	chr9	79700292	12A2p6	cell line	sgMsh2	79700292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	112	10	0	0	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon9:c.T1253C:p.V418A	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999314	GAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	82871711	12A2p6	cell line	sgMsh2	82871711	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	179	116	30	0.25862069	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon40:c.G4979A:p.G1660D	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9999965	ACC	nonsynonymous	NA	NA	NA	NA
M2	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	135	116	32	0.275862069	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.773230738	1	0.7359412	TAC	synonymous	NA	NA	NA	NA
M2	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	173	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.941324377	1	0.9999724	ATT	nonsynonymous	NA	NA	NA	NA
M2	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2692	26	178	4	0.02247191	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	83	108	21	0.194444444	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9994745	TAG	synonymous	NA	NA	NA	NA
M2	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	66	40	10	0.25	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9982681	TTT	nonsynonymous	T	5	TTTTT	NA
M2	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	34	48	9	0.1875	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9838526	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	88567183	12A2p6	cell line	sgMsh2	88567183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	102	11	4	0.363636364	exonic	Zfp949	nonsynonymous SNV	"Zfp949:NM_001163061:exon3:c.A40G:p.T14A,Zfp949:NM_001142943:exon4:c.A40G:p.T14A"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998615	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	89596689	12A2p6	cell line	sgMsh2	89596689	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	49	0	0	NA	exonic	Minar1	nonsynonymous SNV	Minar1:NM_153509:exon3:c.C2303T:p.A768V	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.638755827	2	0.6727372	TGC	nonsynonymous	CTGC	16	CTGCCTGTCTGCCTGC	NA
M2	chr9	91361644	12A2p6	cell line	sgMsh2	91361644	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	0	0	NA	exonic	Zic1	synonymous SNV	"Zic1:NM_009573:exon3:c.G1269A:p.S423S,Zic1:NM_001376941:exon4:c.G1269A:p.S423S"	9qE3.2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9938968	GCG	synonymous	NA	NA	NA	NA
M2	chr9	95921773	12A2p6	cell line	sgMsh2	95921773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	72	21	4	0.19047619	exonic	Atr	synonymous SNV	Atr:NM_019864:exon33:c.C5679A:p.S1893S	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.752219033	1	0.7000237	CCT	synonymous	NA	NA	NA	NA
M2	chr9	95970760	12A2p6	cell line	sgMsh2	95970760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	204	38	10	0.263157895	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon6:c.A659G:p.H220R,Xrn1:NM_011916:exon6:c.A659G:p.H220R"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9998681	CAT	nonsynonymous	T	5	TTTTT	NA
M2	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	89	30	7	0.233333333	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996551	GAA	nonsynonymous	T	5	TTTTT	NA
M2	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.226	146	97	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.949729059	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M2	chr9	96557474	12A2p6	cell line	sgMsh2	96557474	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	92	54	14	0.259259259	exonic	Rasa2	nonsynonymous SNV	Rasa2:NM_053268:exon17:c.C1675T:p.R559W	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9971961	CGT	nonsynonymous	NA	NA	NA	NA
M2	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	127	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999761	TAC	synonymous	NA	NA	NA	NA
M2	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	119	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.999958	TAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	35	16	4	0.25	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	233	48	12	0.25	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	1.50E-08	GAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	66	63	10	0.158730159	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9982681	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	66	67	9	0.134328358	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9982681	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr9	104176768	12A2p6	cell line	sgMsh2	104176768	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	132	124	30	0.241935484	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon42:c.C4888T:p.L1630L,Dnajc13:NM_001359740:exon43:c.C4903T:p.L1635L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999832	AGG	synonymous	NA	NA	NA	NA
M2	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	201	159	27	0.169811321	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.895098626	1	0.9998534	AAC	synonymous	NA	NA	NA	NA
M2	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	152	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999959	ATC	nonsynonymous	NA	NA	NA	NA
M2	chr9	106077388	12A2p6	cell line	sgMsh2	106077388	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	101	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T751A:p.F251I	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9996034	AAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	90	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996785	CAA	nonsynonymous	NA	NA	NA	NA
M2	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	1	0	0	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.970740764	1	0.9823807	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	37	96	21	0.21875	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.932919695	1	0.9705533	GCT	synonymous	NA	NA	NA	NA
M2	chr9	106682111	12A2p6	cell line	sgMsh2	106682111	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	41	86	18	0.209302326	exonic	Tex264	synonymous SNV	"Tex264:NM_001081654:exon3:c.A15G:p.L5L,Tex264:NM_001286498:exon3:c.A15G:p.L5L,Tex264:NM_011573:exon3:c.A15G:p.L5L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.647160509	2	0.5515089	GTA	synonymous	AGT	8	AGTAGTAG	NA
M2	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	69	84	18	0.214285714	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.966538423	1	0.9969814	ACT	nonsynonymous	NA	NA	NA	NA
M2	chr9	107300710	12A2p6	cell line	sgMsh2	107300710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	47	13	2	0.153846154	exonic	Cish	nonsynonymous SNV	"Cish:NM_001317354:exon2:c.C290T:p.S97L,Cish:NM_009895:exon3:c.C584T:p.S195L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	2	1	1	0.9934558	TCG	nonsynonymous	NA	NA	NA	NA
M2	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	92	2	0	0	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.727004988	2	6.86E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	112	112	25	0.223214286	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9862526	CTT	nonsynonymous	NA	NA	NA	NA
M2	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	153	36	15	0.416666667	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9971229	CAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	99	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998291	CTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	108421559	12A2p6	cell line	sgMsh2	108421559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	154	0	0	NA	exonic	Iho1	nonsynonymous SNV	"Iho1:NM_001135198:exon3:c.T59C:p.I20T,Iho1:NM_001379658:exon3:c.T59C:p.I20T"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999964	GAT	nonsynonymous	NA	NA	NA	NA
M2	chr9	108489496	12A2p6	cell line	sgMsh2	108489496	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	59	123	38	0.308943089	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon30:c.G4828T:p.A1610S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	AGC	nonsynonymous	NA	NA	NA	NA
M2	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	70	121	18	0.148760331	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.705993283	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	76	5	0	0	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.991752469	1	0.9989424	CCT	synonymous	NA	NA	NA	NA
M2	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	76	66	18	0.272727273	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.857277558	1	0.9693245	TAC	synonymous	NA	NA	NA	NA
M2	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	112	11	4	0.363636364	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9999202	GTG	synonymous	NA	NA	NA	NA
M2	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	49	12	4	0.333333333	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.844670535	1	0.9329445	GTC	nonsynonymous	NA	NA	NA	NA
M2	chr9	110035410	12A2p6	cell line	sgMsh2	110035410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	112	266	53	0.19924812	exonic	Map4	nonsynonymous SNV	"Map4:NM_001205330:exon7:c.A1702G:p.T568A,Map4:NM_001205332:exon7:c.A1702G:p.T568A,Map4:NM_008633:exon7:c.A1702G:p.T568A"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.9539314	1	0.9996188	AAC	nonsynonymous	NA	NA	NA	NA
M2	chr9	110088237	12A2p6	cell line	sgMsh2	110088237	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	114	93	20	0.215053763	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon8:c.A1209C:p.P403P,Dhx30:NM_133347:exon11:c.A1191C:p.P397P,Dhx30:NM_001252682:exon12:c.A1122C:p.P374P"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999404	CTG	synonymous	NA	NA	NA	NA
M2	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	123	323	82	0.253869969	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.924515013	1	0.9993064	GCT	nonsynonymous	NA	NA	NA	NA
M2	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	97	11	4	0.363636364	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.748016693	1	0.6006477	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M2	chr9	110511366	12A2p6	cell line	sgMsh2	110511366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	79	1	0	0	exonic	Kif9	stopgain	"Kif9:NM_001163569:exon15:c.G1426T:p.G476X,Kif9:NM_010628:exon15:c.G1426T:p.G476X"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.99595481	1	0.9992262	TGG	nonsynonymous	NA	NA	NA	NA
M2	chr9	110551106	12A2p6	cell line	sgMsh2	110551106	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	184	136	1	0.007352941	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.A3988C:p.K1330Q	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.147081934	3	1.00E-09	TAA	nonsynonymous	T	5	TTTTT	NA
M2	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	63	13	5	0.384615385	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.920312672	1	0.9887628	ATA	synonymous	NA	NA	NA	NA
M2	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	47	55	18	0.327272727	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.437043461	2	0.8546195	GGA	nonsynonymous	G	5	GGGGG	NA
M2	chr9	110634008	12A2p6	cell line	sgMsh2	110634008	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	38	64	9	0.140625	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon27:c.G3988A:p.D1330N	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9877585	TCA	nonsynonymous	NA	NA	NA	NA
M2	chr9	110635432	12A2p6	cell line	sgMsh2	110635432	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	42	44	4	0.090909091	exonic	Nbeal2	stopgain	Nbeal2:NM_183276:exon23:c.3238delC:p.L1080fs*0	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.907705649	NA	NA	AGG	nonsynonymous	G	5	GGGGG	-1
M2	chr9	112136475	12A2p6	cell line	sgMsh2	112136475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	28	0	0	NA	exonic	Arpp21	nonsynonymous SNV	"Arpp21:NM_001177617:exon11:c.A1120G:p.I374V,Arpp21:NM_001177616:exon13:c.A1267G:p.I423V,Arpp21:NM_001177618:exon13:c.A1327G:p.I443V,Arpp21:NM_001362014:exon13:c.A1327G:p.I443V,Arpp21:NM_001362016:exon13:c.A1267G:p.I423V,Arpp21:NM_001362017:exon13:c.A1267G:p.I423V,Arpp21:NM_001362018:exon13:c.A1267G:p.I423V,Arpp21:NM_001362038:exon13:c.A1267G:p.I423V,Arpp21:NM_001362039:exon13:c.A1267G:p.I423V,Arpp21:NM_001362010:exon14:c.A1327G:p.I443V,Arpp21:NM_001362011:exon14:c.A1327G:p.I443V,Arpp21:NM_001362012:exon14:c.A1327G:p.I443V,Arpp21:NM_001362015:exon14:c.A1327G:p.I443V,Arpp21:NM_001362028:exon14:c.A1369G:p.I457V,Arpp21:NM_001362029:exon14:c.A1369G:p.I457V,Arpp21:NM_001362030:exon14:c.A1366G:p.I456V,Arpp21:NM_001362031:exon14:c.A1366G:p.I456V,Arpp21:NM_001362032:exon14:c.A1366G:p.I456V,Arpp21:NM_001362033:exon14:c.A1366G:p.I456V,Arpp21:NM_001362034:exon14:c.A1324G:p.I442V,Arpp21:NM_001362035:exon14:c.A1324G:p.I442V,Arpp21:NM_001362036:exon14:c.A1327G:p.I443V,Arpp21:NM_001362037:exon14:c.A1327G:p.I443V,Arpp21:NM_033264:exon14:c.A1426G:p.I476V,Arpp21:NM_001362013:exon15:c.A1327G:p.I443V,Arpp21:NM_001362020:exon15:c.A1429G:p.I477V,Arpp21:NM_001362021:exon15:c.A1429G:p.I477V,Arpp21:NM_001362022:exon15:c.A1426G:p.I476V,Arpp21:NM_001362023:exon15:c.A1426G:p.I476V,Arpp21:NM_001362024:exon15:c.A1426G:p.I476V,Arpp21:NM_001362025:exon15:c.A1426G:p.I476V,Arpp21:NM_001362026:exon15:c.A1426G:p.I476V,Arpp21:NM_001362027:exon15:c.A1423G:p.I475V,Arpp21:NM_001362040:exon15:c.A580G:p.I194V,Arpp21:NM_001362041:exon15:c.A577G:p.I193V"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9755977	ATG	nonsynonymous	NA	NA	NA	NA
M2	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	87	153	58	0.379084967	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9996031	ATC	nonsynonymous	A	5	AAAAA	NA
M2	chr9	117959990	12A2p6	cell line	sgMsh2	117959990	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.122	87	3	0	0	exonic	Zcwpw2	frameshift insertion	Zcwpw2:NM_001378466:exon5:c.585dupA:p.A196Sfs*14	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.512685598	NA	NA	GCT	frameshift	NA	NA	NA	1
M2	chr9	118577156	12A2p6	cell line	sgMsh2	118577156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	170	131	34	0.259541985	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon23:c.T6621C:p.V2207V	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999988	TTA	synonymous	NA	NA	NA	NA
M2	chr9	119081077	12A2p6	cell line	sgMsh2	119081077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	6	4	0.666666667	exonic	Plcd1	nonsynonymous SNV	"Plcd1:NM_001293648:exon3:c.A351G:p.I117M,Plcd1:NM_019676:exon3:c.A273G:p.I91M"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.512685598	2	0.947187	GTA	nonsynonymous	NA	NA	NA	NA
M2	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999881	GAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	59	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9971718	GTG	nonsynonymous	NA	NA	NA	NA
M2	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	100	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9998407	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M2	chr9	119782012	12A2p6	cell line	sgMsh2	119782012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	97	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon17:c.C2772A:p.A924A	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.903503308	1	0.9956013	AGG	synonymous	NA	NA	NA	NA
M2	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	53	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9956962	CCC	synonymous	NA	NA	NA	NA
M2	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	110	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.819456489	1	0.9450322	GAT	synonymous	NA	NA	NA	NA
M2	chr9	121965093	12A2p6	cell line	sgMsh2	121965093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	61	0	0	NA	exonic	Gask1a	synonymous SNV	"Gask1a:NM_001199927:exon2:c.T360C:p.D120D,Gask1a:NM_177743:exon2:c.T312C:p.D104D"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9975414	ATC	synonymous	NA	NA	NA	NA
M2	chr9	122975797	12A2p6	cell line	sgMsh2	122975797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	108	13	3	0.230769231	exonic	Kif15	nonsynonymous SNV	Kif15:NM_010620:exon7:c.A608G:p.Q203R	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999091	CAG	nonsynonymous	NA	NA	NA	NA
M2	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	72	94	23	0.244680851	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	0.869884581	1	0.9750055	CAC	synonymous	NA	NA	NA	NA
M2	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	139	80	26	0.325	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999897	ATA	nonsynonymous	NA	NA	NA	NA
M2	chr9	123779621	12A2p6	cell line	sgMsh2	123779621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	203	0	0	NA	exonic	Ccr9	nonsynonymous SNV	"Ccr9:NM_009913:exon3:c.A367G:p.N123D,Ccr9:NM_001166625:exon4:c.A367G:p.N123D"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.160317559	NA	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M2	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	15	4	3	0.75	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M2	chrX	7616020	12A2p6	cell line	sgMsh2	7616020	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	51	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon14:c.A1742T:p.Y581F	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	50	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	52	14	5	0.357142857	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2	chrX	7896062	12A2p6	cell line	sgMsh2	7896062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	128	135	67	0.496296296	exonic	Pqbp1	nonsynonymous SNV	"Pqbp1:NM_001252528:exon4:c.T223C:p.W75R,Pqbp1:NM_001252529:exon4:c.T316C:p.W106R,Pqbp1:NM_019478:exon4:c.T223C:p.W75R"	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	53	42	10	0.238095238	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M2	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	138	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2	chrX	13156528	12A2p6	cell line	sgMsh2	13156528	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	148	399	178	0.446115288	exonic	Usp9x	nonsynonymous SNV	Usp9x:NM_009481:exon35:c.A5866G:p.M1956V	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	117	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2	chrX	36883112	12A2p6	cell line	sgMsh2	36883112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	51	168	96	0.571428571	exonic	Ube2a	nonsynonymous SNV	"Ube2a:NM_001313696:exon6:c.T422C:p.I141T,Ube2a:NM_019668:exon6:c.T431C:p.I144T"	XqA3.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M2	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	147	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M2	chrX	38192689	12A2p6	cell line	sgMsh2	38192689	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	95	55	3	0.054545455	exonic	Zbtb33	nonsynonymous SNV	"Zbtb33:NM_001079513:exon2:c.A473G:p.D158G,Zbtb33:NM_020256:exon2:c.A473G:p.D158G"	XqA3.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	41672325	12A2p6	cell line	sgMsh2	41672325	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	61	0	0	NA	exonic	Gria3	nonsynonymous SNV	"Gria3:NM_001281929:exon15:c.A2528G:p.K843R,Gria3:NM_001290451:exon15:c.A2528G:p.K843R,Gria3:NM_016886:exon15:c.A2528G:p.K843R,Gria3:NM_001358361:exon16:c.A2528G:p.K843R"	XqA4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M2	chrX	42683885	12A2p6	cell line	sgMsh2	42683885	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	34	0	0	NA	exonic	Tenm1	synonymous SNV	Tenm1:NM_011855:exon19:c.C3249T:p.N1083N	XqA4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGT	synonymous	NA	NA	NA	NA
M2	chrX	43167706	12A2p6	cell line	sgMsh2	43167706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.576	64	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon2:c.C49T:p.H17Y	XqA4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
M2	chrX	45092453	12A2p6	cell line	sgMsh2	45092453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.555	120	10	1	0.1	exonic	Prr32	synonymous SNV	Prr32:NM_026841:exon2:c.T664C:p.L222L	XqA4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TTT	synonymous	NA	NA	NA	NA
M2	chrX	48529872	12A2p6	cell line	sgMsh2	48529872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	65	2	2	1	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon2:c.T482C:p.V161A	XqA5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	52056681	12A2p6	cell line	sgMsh2	52056681	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	92	0	0	NA	exonic	Gpc4	synonymous SNV	Gpc4:NM_008150:exon6:c.T1134A:p.A378A	XqA5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M2	chrX	56138472	12A2p6	cell line	sgMsh2	56138472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	126	0	0	NA	exonic	3830403N18Rik	synonymous SNV	3830403N18Rik:NM_027510:exon3:c.A132G:p.T44T	XqA5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M2	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	41	7	4	0.571428571	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	56455218	12A2p6	cell line	sgMsh2	56455218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	49	5	0	0	exonic	Ints6l	synonymous SNV	Ints6l:NM_172779:exon1:c.C13T:p.L5L	XqA6	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M2	chrX	57244664	12A2p6	cell line	sgMsh2	57244664	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.548	77	0	0	NA	exonic	Arhgef6	nonsynonymous SNV	"Arhgef6:NM_001358573:exon14:c.G1183A:p.G395R,Arhgef6:NM_152801:exon15:c.G1714A:p.G572R"	XqA6	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M2	chrX	59067428	12A2p6	cell line	sgMsh2	59067428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	28	0	0	NA	exonic	Fgf13	nonsynonymous SNV	"Fgf13:NM_001290415:exon4:c.G415A:p.A139T,Fgf13:NM_001356335:exon4:c.G436A:p.A146T,Fgf13:NM_010200:exon4:c.G574A:p.A192T,Fgf13:NM_001290414:exon6:c.G604A:p.A202T"	XqA6	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.603	58	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	92	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M2	chrX	73421972	12A2p6	cell line	sgMsh2	73421972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.622	39	0	0	NA	exonic	Zfp92	synonymous SNV	"Zfp92:NM_001310531:exon5:c.C570T:p.I190I,Zfp92:NM_009566:exon6:c.C570T:p.I190I"	XqA7.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M2	chrX	73491973	12A2p6	cell line	sgMsh2	73491973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.62	17	3105	1416	0.456038647	exonic	Bgn	nonsynonymous SNV	Bgn:NM_007542:exon4:c.T380C:p.I127T	XqA7.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	100	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	60	123	59	0.479674797	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M2	chrX	81422577	12A2p6	cell line	sgMsh2	81422577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	42	0	0	NA	exonic	4930595M18Rik	nonsynonymous SNV	4930595M18Rik:NM_173435:exon3:c.A994G:p.R332G	XqB	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	84647068	12A2p6	cell line	sgMsh2	84647068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	40	0	0	NA	exonic	Dmd	nonsynonymous SNV	Dmd:NM_007868:exon55:c.A8038G:p.T2680A	XqC1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	90	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M2	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.581	76	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M2	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	96	2	0	0	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M2	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	79	1008	484	0.48015873	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	100541121	12A2p6	cell line	sgMsh2	100541121	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.499	98	0	0	NA	exonic	Dgat2l6	frameshift deletion	Dgat2l6:NM_001114084:exon4:c.321delC:p.H109Mfs*24	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	16	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.696	36	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M2	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.508	69	98	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	48	12	3	0.25	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M2	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	95	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M2	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	70	88	41	0.465909091	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M2	chrX	106838969	12A2p6	cell line	sgMsh2	106838969	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	24	0	0	NA	exonic	Rtl3	nonsynonymous SNV	Rtl3:NM_199468:exon2:c.T686G:p.L229R	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M2	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.568	62	32	14	0.4375	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	110814884	12A2p6	cell line	sgMsh2	110814884	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	31	0	0	NA	exonic	Pou3f4	synonymous SNV	Pou3f4:NM_008901:exon1:c.C420T:p.T140T	XqE1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M2	chrX	110814921	12A2p6	cell line	sgMsh2	110814921	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.441	33	0	0	NA	exonic	Pou3f4	frameshift deletion	Pou3f4:NM_008901:exon1:c.457delC:p.P153Hfs*87	XqE1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ACC	frameshift	CAC	8	CACCACCA	-1
M2	chrX	112120441	12A2p6	cell line	sgMsh2	112120441	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	64	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A2603C:p.N868T	XqE1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	56	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M2	chrX	129957349	12A2p6	cell line	sgMsh2	129957349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	84	24	19	0.791666667	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon12:c.T1324C:p.Y442H	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	43	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M2	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	44	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	133896744	12A2p6	cell line	sgMsh2	133896744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	105	2	2	1	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon3:c.T290C:p.L97P	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.672	32	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	133928747	12A2p6	cell line	sgMsh2	133928747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	40	0	0	NA	exonic	Srpx2	nonsynonymous SNV	"Srpx2:NM_001083895:exon8:c.A967G:p.T323A,Srpx2:NM_026838:exon9:c.A967G:p.T323A"	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M2	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.603	58	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2	chrX	135307507	12A2p6	cell line	sgMsh2	135307507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	175	0	0	NA	exonic	Pramel3	synonymous SNV	Pramel3:NM_031390:exon3:c.T165C:p.I55I	XqF1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TTG	synonymous	NA	NA	NA	NA
M2	chrX	135655082	12A2p6	cell line	sgMsh2	135655082	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	78	0	0	NA	exonic	Tcp11x2	synonymous SNV	Tcp11x2:NM_027952:exon10:c.C1323T:p.G441G	XqF1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
M2	chrX	138208997	12A2p6	cell line	sgMsh2	138208998	TC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.524	69	0	0	NA	exonic	Tex13a	frameshift deletion	Tex13a:NM_026469:exon1:c.430_431del:p.D144Pfs*57	XqF1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTC	frameshift	TC	13	TCTCTCTCTCTCT	-2
M2	chrX	139725807	12A2p6	cell line	sgMsh2	139725807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	83	69	34	0.492753623	exonic	Tbc1d8b	nonsynonymous SNV	Tbc1d8b:NM_001081499:exon10:c.A1645G:p.T549A	XqF1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	143805865	12A2p6	cell line	sgMsh2	143805865	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	57	0	0	NA	exonic	Capn6	nonsynonymous SNV	Capn6:NM_007603:exon9:c.G1179T:p.E393D	XqF2	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M2	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	37	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M2	chrX	150560905	12A2p6	cell line	sgMsh2	150560905	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	36	1	0	0	exonic	Alas2	nonsynonymous SNV	"Alas2:NM_001102446:exon7:c.C950T:p.S317F,Alas2:NM_009653:exon7:c.C995T:p.S332F"	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TCC	nonsynonymous	NA	NA	NA	NA
M2	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	10	22	12	0.545454545	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M2	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	55	22	11	0.5	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2	chrX	154484267	12A2p6	cell line	sgMsh2	154484267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	98	0	0	NA	exonic	Samt4	nonsynonymous SNV	Samt4:NM_029199:exon3:c.A401G:p.Y134C	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	154949000	12A2p6	cell line	sgMsh2	154949000	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.483	326	0	0	NA	exonic	Magea3	frameshift insertion	Magea3:NM_020017:exon1:c.505_506insA:p.L169Hfs*5	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAG	frameshift	NA	NA	NA	1
M2	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	130	145	67	0.462068966	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2	chrX	157470068	12A2p6	cell line	sgMsh2	157470068	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.582	46	11	2	0.181818182	exonic	Sms	frameshift deletion	Sms:NM_009214:exon2:c.90delT:p.Q31Rfs*4	XqF4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2	chrX	162771167	12A2p6	cell line	sgMsh2	162771167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	54	406	147	0.362068966	exonic	Rbbp7	nonsynonymous SNV	Rbbp7:NM_009031:exon5:c.A596G:p.H199R	XqF4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M2	chrX	162787645	12A2p6	cell line	sgMsh2	162787645	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	51	4	2	0.5	exonic	Txlng	nonsynonymous SNV	"Txlng:NM_178935:exon6:c.C898A:p.Q300K,Txlng:NM_001290776:exon7:c.C751A:p.Q251K"	XqF4	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGC	nonsynonymous	TGT	8	TGTTGTTG	NA
M2	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	47	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.776	49	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2	chrY	1336383	12A2p6	cell line	sgMsh2	1336383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.641	38	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon32:c.C4490T:p.P1497L	YqA1	NA	NA	NA	NA	0.99	4.160317559	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	6248458	12A2p6	cell line	sgMsh2	6248458	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	213	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.T2100G:p.D700E	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	44	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9901535	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	6263127	12A2p6	cell line	sgMsh2	6263127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	100	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.A4188C:p.S1396S	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997736	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	9681850	12A2p6	cell line	sgMsh2	9681850	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.408	63	0	0	NA	exonic	Mybl1	stopgain	"Mybl1:NM_001290397:exon8:c.799delA:p.I267fs*0,Mybl1:NM_008651:exon8:c.799delA:p.I267fs*0"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	ATT	nonsynonymous	T	9	TTTTTTTTT	-1
M2_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	251	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	9.43E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	11185958	12A2p6	cell line	sgMsh2	11185958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	179	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon29:c.A3552G:p.T1184T	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.73648716	2	0.9292531	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	273	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	2.91E-09	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M2_p20	chr1	12848423	12A2p6	cell line	sgMsh2	12848423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	84	0	0	NA	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.G2517A:p.Q839Q,Sulf1:NM_001198565:exon20:c.G2517A:p.Q839Q,Sulf1:NM_172294:exon20:c.G2517A:p.Q839Q"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr1	14302820	12A2p6	cell line	sgMsh2	14302820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	186	0	0	NA	exonic	Eya1	nonsynonymous SNV	"Eya1:NM_001310459:exon3:c.T74C:p.L25P,Eya1:NM_010164:exon3:c.T74C:p.L25P"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999993	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	18251301	12A2p6	cell line	sgMsh2	18251301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	128	0	0	NA	exonic	Defb41	nonsynonymous SNV	Defb41:NM_183124:exon2:c.G88A:p.E30K	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999658	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	19104458	12A2p6	cell line	sgMsh2	19104458	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	186	0	0	NA	exonic	Tfap2d	nonsynonymous SNV	"Tfap2d:NM_001379073:exon1:c.C146A:p.P49H,Tfap2d:NM_001379074:exon2:c.C62A:p.P21H,Tfap2d:NM_153154:exon2:c.C134A:p.P45H"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.867003872	1	0.9964986	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	20381404	12A2p6	cell line	sgMsh2	20381404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Pkhd1	synonymous SNV	Pkhd1:NM_153179:exon40:c.A6666G:p.R2222R	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997578	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	103	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.787761583	1	0.7387509	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	137	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999814	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr1	23378801	12A2p6	cell line	sgMsh2	23378801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	138	0	0	NA	exonic	Ogfrl1	nonsynonymous SNV	"Ogfrl1:NM_001081079:exon3:c.T328G:p.F110V,Ogfrl1:NM_001379082:exon3:c.T331G:p.F111V,Ogfrl1:NM_001379083:exon3:c.T328G:p.F110V"	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999756	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	129	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	103	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.9995372	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	26683437	12A2p6	cell line	sgMsh2	26683437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	189	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2661G:p.Q887Q	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999994	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr1	28777106	12A2p6	cell line	sgMsh2	28777106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	181	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.T1844A:p.V615E	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.9999936	TAC	nonsynonymous	TCTTT	11	TCTTTTCTTTT	NA
M2_p20	chr1	28777321	12A2p6	cell line	sgMsh2	28777321	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.212	196	0	0	NA	exonic	Gm597	synonymous SNV	Gm597:NM_001013750:exon2:c.T1629C:p.A543A	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	34	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.980835	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	33734783	12A2p6	cell line	sgMsh2	33734783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	123	0	0	NA	exonic	Rab23	nonsynonymous SNV	"Rab23:NM_001159729:exon5:c.T323C:p.V108A,Rab23:NM_008999:exon5:c.T323C:p.V108A"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.764455027	2	0.5169431	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M2_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	177	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999988	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	36173561	12A2p6	cell line	sgMsh2	36173561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	80	0	0	NA	exonic	Uggt1	nonsynonymous SNV	Uggt1:NM_198899:exon25:c.T2699C:p.I900T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9991266	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	257	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	6.62E-09	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	36812637	12A2p6	cell line	sgMsh2	36812637	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	115	0	0	NA	exonic	Tmem131	nonsynonymous SNV	Tmem131:NM_018872:exon26:c.A2784T:p.L928F	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9994216	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	63	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9972517	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	50	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9934126	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	37875927	12A2p6	cell line	sgMsh2	37875927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	228	0	0	NA	exonic	Lipt1	nonsynonymous SNV	"Lipt1:NM_001037918:exon2:c.G1063A:p.D355N,Lipt1:NM_001377029:exon2:c.G1063A:p.D355N,Lipt1:NM_001377030:exon2:c.G1063A:p.D355N,Lipt1:NM_001377031:exon2:c.G1063A:p.D355N,Lipt1:NM_001377032:exon2:c.G1063A:p.D355N,Lipt1:NM_001377033:exon2:c.G1063A:p.D355N,Lipt1:NM_001377034:exon2:c.G1063A:p.D355N"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	4.08E-08	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	38798142	12A2p6	cell line	sgMsh2	38798142	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	exonic	Lonrf2	nonsynonymous SNV	Lonrf2:NM_001029878:exon12:c.G2152T:p.G718C	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.999849	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	43100865	12A2p6	cell line	sgMsh2	43100865	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	120	0	0	NA	exonic	AI597479	frameshift deletion	AI597479:NM_133818:exon2:c.250delA:p.N85Mfs*8	1qB	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	206	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999989	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	240	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.87E-08	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	46659515	12A2p6	cell line	sgMsh2	46659515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon40:c.G6606A:p.E2202E	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.769116338	1	0.5898647	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr1	51132266	12A2p6	cell line	sgMsh2	51132266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	244	0	0	NA	exonic	Tmeff2	synonymous SNV	Tmeff2:NM_019790:exon6:c.A660G:p.E220E	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.811068138	1	0.898856	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	51300751	12A2p6	cell line	sgMsh2	51300751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	75	0	0	NA	exonic	Cavin2	nonsynonymous SNV	Cavin2:NM_138741:exon2:c.A586G:p.T196A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9987762	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	40	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9871385	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	215	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	318	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.09E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	53434034	12A2p6	cell line	sgMsh2	53434034	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	473	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon57:c.G10432A:p.A3478T	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	53640345	12A2p6	cell line	sgMsh2	53640345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	605	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon11:c.T980C:p.L327P	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	260	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	127	0	0	NA	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999634	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	55211207	12A2p6	cell line	sgMsh2	55211207	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	270	0	0	NA	exonic	Rftn2	synonymous SNV	"Rftn2:NM_001356288:exon2:c.G9A:p.E3E,Rftn2:NM_028713:exon3:c.G378A:p.E126E"	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	3.34E-09	ACT	synonymous	NA	NA	NA	NA
M2_p20	chr1	58017170	12A2p6	cell line	sgMsh2	58017170	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	92	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.A2212G:p.I738V,Sgo2a:NM_199007:exon7:c.A2512G:p.I838V"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.964891406	1	0.9988143	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	155	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999919	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	58153180	12A2p6	cell line	sgMsh2	58153180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	207	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon15:c.G1608A:p.T536T	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999998	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	120	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999414	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	139	0	0	NA	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999837	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	58740301	12A2p6	cell line	sgMsh2	58740301	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	176	0	0	NA	exonic	Cflar	nonsynonymous SNV	"Cflar:NM_001293805:exon5:c.T148G:p.F50V,Cflar:NM_001355056:exon6:c.T148G:p.F50V,Cflar:NM_001289704:exon7:c.T706G:p.F236V,Cflar:NM_001293804:exon7:c.T148G:p.F50V,Cflar:NM_207653:exon7:c.T706G:p.F236V"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999987	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr1	58824088	12A2p6	cell line	sgMsh2	58824088	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	0	0	NA	exonic	Casp8	nonsynonymous SNV	"Casp8:NM_001080126:exon2:c.G146T:p.R49L,Casp8:NM_009812:exon2:c.G146T:p.R49L,Casp8:NM_001277926:exon3:c.G206T:p.R69L"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999948	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	170	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.999998	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	145	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.77843896	1	0.5812263	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	157	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.94158485	1	0.9998853	CTG	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr1	62771757	12A2p6	cell line	sgMsh2	62771757	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	221	0	0	NA	exonic	Nrp2	nonsynonymous SNV	"Nrp2:NM_001077403:exon12:c.A1956C:p.E652D,Nrp2:NM_001077404:exon12:c.A1956C:p.E652D,Nrp2:NM_001077405:exon12:c.A1956C:p.E652D,Nrp2:NM_001077406:exon12:c.A1956C:p.E652D,Nrp2:NM_001077407:exon12:c.A1956C:p.E652D,Nrp2:NM_010939:exon12:c.A1956C:p.E652D"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.722503227	2	0.9903615	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	63058826	12A2p6	cell line	sgMsh2	63058826	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	56	0	0	NA	exonic	Ino80d	synonymous SNV	"Ino80d:NM_001081436:exon12:c.A1908C:p.T636T,Ino80d:NM_001114609:exon12:c.A2223C:p.T741T"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.741148471	1	0.6012585	CTG	synonymous	GTGG	9	GTGGGTGGG	NA
M2_p20	chr1	63719734	12A2p6	cell line	sgMsh2	63719734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	191	0	0	NA	exonic	Mdh1b	nonsynonymous SNV	Mdh1b:NM_029696:exon5:c.T698C:p.V233A	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.885649116	1	0.9990797	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	66416139	12A2p6	cell line	sgMsh2	66416139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	138	0	0	NA	exonic	Map2	nonsynonymous SNV	Map2:NM_001310634:exon7:c.A4187G:p.D1396G	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999826	GAC	nonsynonymous	GTGG	8	GTGGGTGG	NA
M2_p20	chr1	71577793	12A2p6	cell line	sgMsh2	71577793	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	127	0	0	NA	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon15:c.A1511C:p.D504A	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999634	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	181	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.999999	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	72326286	12A2p6	cell line	sgMsh2	72326286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	234	0	0	NA	exonic	Xrcc5	nonsynonymous SNV	"Xrcc5:NM_001357519:exon8:c.A812G:p.Q271R,Xrcc5:NM_001357520:exon8:c.A812G:p.Q271R,Xrcc5:NM_009533:exon8:c.A869G:p.Q290R"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	2.76E-08	CAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	109	0	0	NA	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.946246161	1	0.9990666	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	74132932	12A2p6	cell line	sgMsh2	74132932	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	69	0	0	NA	exonic	Rufy4	synonymous SNV	"Rufy4:NM_001034060:exon8:c.A561C:p.L187L,Rufy4:NM_001170641:exon8:c.A813C:p.L271L"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.825052072	1	0.8934753	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	74133346	12A2p6	cell line	sgMsh2	74133346	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	58	0	0	NA	exonic	Rufy4	nonsynonymous SNV	"Rufy4:NM_001034060:exon8:c.G975T:p.K325N,Rufy4:NM_001170641:exon8:c.G1227T:p.K409N"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9961519	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	74383678	12A2p6	cell line	sgMsh2	74383678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	81	0	0	NA	exonic	Slc11a1	synonymous SNV	Slc11a1:NM_013612:exon11:c.A1089G:p.V363V	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9991836	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	193	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	74622232	12A2p6	cell line	sgMsh2	74622232	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	135	0	0	NA	exonic	Stk36	nonsynonymous SNV	Stk36:NM_175031:exon12:c.C1417A:p.L473I	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.885649116	1	0.9955968	CCT	nonsynonymous	TCCT	8	TCCTTCCT	NA
M2_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	120	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999211	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	216	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.936923539	1	0.9999901	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	74	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9954191	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	75194187	12A2p6	cell line	sgMsh2	75194187	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	163	0	0	NA	exonic	Ankzf1	nonsynonymous SNV	"Ankzf1:NM_001267620:exon2:c.C236T:p.T79I,Ankzf1:NM_026187:exon2:c.C236T:p.T79I"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.713180604	2	0.9710193	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	108	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998681	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	86	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9994174	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	78192518	12A2p6	cell line	sgMsh2	78192518	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	129	0	0	NA	exonic	Pax3	synonymous SNV	"Pax3:NM_001159520:exon4:c.G510A:p.A170A,Pax3:NM_008781:exon4:c.G510A:p.A170A"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.843697316	1	0.9671474	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr1	78417181	12A2p6	cell line	sgMsh2	78417181	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	246	0	0	NA	exonic	Sgpp2	nonsynonymous SNV	Sgpp2:NM_001004173:exon5:c.G820T:p.D274Y	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.28E-08	TGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	78417407	12A2p6	cell line	sgMsh2	78417407	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	178	0	0	NA	exonic	Sgpp2	nonsynonymous SNV	Sgpp2:NM_001004173:exon5:c.G1046T:p.R349M	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999988	AGG	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr1	81269097	12A2p6	cell line	sgMsh2	81269097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	134	0	0	NA	exonic	Nyap2	synonymous SNV	"Nyap2:NM_001356397:exon5:c.T1663C:p.L555L,Nyap2:NM_001356400:exon5:c.T1663C:p.L555L,Nyap2:NM_001356398:exon6:c.T1759C:p.L587L,Nyap2:NM_001356399:exon6:c.T1663C:p.L555L"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999772	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr1	82676714	12A2p6	cell line	sgMsh2	82676714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	95	0	0	NA	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon28:c.A2066C:p.D689A	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996827	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	84742301	12A2p6	cell line	sgMsh2	84742301	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	305	0	0	NA	exonic	Trip12	synonymous SNV	Trip12:NM_133975:exon30:c.T4455G:p.V1485V	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.792422894	1	0.5879078	AAA	synonymous	NA	NA	NA	NA
M2_p20	chr1	84747252	12A2p6	cell line	sgMsh2	84747252	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	131	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon25:c.C3768A:p.N1256K	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.867003872	1	0.9886226	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	148	0	0	NA	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999912	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	119	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9978133	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	75	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993768	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	86427494	12A2p6	cell line	sgMsh2	86427494	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	72	0	0	NA	exonic	Tex44	nonsynonymous SNV	Tex44:NM_027966:exon1:c.G1124A:p.G375D	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9985017	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	88205463	12A2p6	cell line	sgMsh2	88205463	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.166	31	0	0	NA	exonic	Dnajb3	synonymous SNV	Dnajb3:NM_008299:exon1:c.C216T:p.G72G	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.773777649	1	0.7870745	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr1	88218234	12A2p6	cell line	sgMsh2	88218234	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	483	0	0	NA	exonic	Ugt1a1;Ugt1a10;Ugt1a2;Ugt1a5;Ugt1a6a;Ugt1a6b;Ugt1a7c;Ugt1a8;Ugt1a9	nonsynonymous SNV	"Ugt1a8:NM_001378375:exon5:c.C1403T:p.A468V,Ugt1a2:NM_013701:exon5:c.C1412T:p.A471V,Ugt1a10:NM_201641:exon5:c.C1403T:p.A468V,Ugt1a7c:NM_201642:exon5:c.C1406T:p.A469V,Ugt1a5:NM_201643:exon5:c.C1400T:p.A467V,Ugt1a9:NM_201644:exon5:c.C1397T:p.A466V,Ugt1a1:NM_201645:exon5:c.C1418T:p.A473V,Ugt1a6a:NM_145079:exon6:c.C1406T:p.A469V,Ugt1a6b:NM_201410:exon6:c.C1406T:p.A469V"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.354259647	3	1.77E-09	GCA	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr1	88233353	12A2p6	cell line	sgMsh2	88233353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	439	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon7:c.T692G:p.L231R	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.321630469	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	88243971	12A2p6	cell line	sgMsh2	88243971	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	408	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon22:c.T2321C:p.L774P	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.223742935	3	1	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	316	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.344937024	3	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	88265942	12A2p6	cell line	sgMsh2	88265942	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	560	0	0	NA	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon5:c.G1015A:p.D339N,Hjurp:NM_198652:exon8:c.G1243A:p.D415N"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.24704949	3	1	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	89145682	12A2p6	cell line	sgMsh2	89145682	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.135	55	0	0	NA	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon4:c.A2251G:p.T751A	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	0.000931349	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	90145105	12A2p6	cell line	sgMsh2	90145105	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	154	0	0	NA	exonic	Iqca	nonsynonymous SNV	"Iqca:NM_001368722:exon2:c.A52G:p.N18D,Iqca:NM_029122:exon2:c.A52G:p.N18D"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999941	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	90933394	12A2p6	cell line	sgMsh2	90933394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	79	0	0	NA	exonic	Mlph	synonymous SNV	Mlph:NM_053015:exon7:c.T750G:p.A250A	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9990656	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr1	91300583	12A2p6	cell line	sgMsh2	91300583	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	100	0	0	NA	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon2:c.G109A:p.A37T	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9997736	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.337	10	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9082715	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M2_p20	chr1	92480592	12A2p6	cell line	sgMsh2	92480592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	83	0	0	NA	exonic	Olfr1416	nonsynonymous SNV	Olfr1416:NM_147038:exon1:c.A28G:p.S10G	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.839036005	1	0.9325735	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	105	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998385	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	93054871	12A2p6	cell line	sgMsh2	93054871	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	0	0	NA	exonic	Kif1a	nonsynonymous SNV	"Kif1a:NM_001110315:exon23:c.G2183A:p.G728D,Kif1a:NM_001294149:exon23:c.G2183A:p.G728D,Kif1a:NM_001294150:exon23:c.G2210A:p.G737D,Kif1a:NM_008440:exon23:c.G2183A:p.G728D,Kif1a:NM_001368847:exon24:c.G2210A:p.G737D"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999858	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	93140406	12A2p6	cell line	sgMsh2	93140406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	153	0	0	NA	exonic	Agxt	nonsynonymous SNV	"Agxt:NM_001276710:exon6:c.A680G:p.K227R,Agxt:NM_016702:exon6:c.A746G:p.K249R"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999937	AAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M2_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	218	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	107	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998589	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	161	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999963	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	138	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999826	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	95591739	12A2p6	cell line	sgMsh2	95591739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	255	0	0	NA	exonic	St8sia4	synonymous SNV	St8sia4:NM_009183:exon5:c.T1023C:p.N341N	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	7.43E-09	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Vardict	2	0.179	89	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.834374694	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr1	100379099	12A2p6	cell line	sgMsh2	100379099	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	303	0	0	NA	exonic	Cntnap5b	nonsynonymous SNV	Cntnap5b:NM_172851:exon17:c.A2540T:p.E847V	1qE1.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.25E-09	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	106712860	12A2p6	cell line	sgMsh2	106712860	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	76	0	0	NA	exonic	Bcl2	synonymous SNV	"Bcl2:NM_009741:exon1:c.A21G:p.T7T,Bcl2:NM_177410:exon1:c.A21G:p.T7T"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.494098981	2	0.9624615	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr1	110049021	12A2p6	cell line	sgMsh2	110049021	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	144	0	0	NA	exonic	Cdh7	frameshift deletion	"Cdh7:NM_001316743:exon3:c.415delT:p.F139Lfs*15,Cdh7:NM_172853:exon3:c.415delT:p.F139Lfs*15,Cdh7:NM_001316744:exon4:c.241delT:p.F81Lfs*15"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr1	110954685	12A2p6	cell line	sgMsh2	110954685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	137	0	0	NA	exonic	Cdh19	synonymous SNV	"Cdh19:NM_001081386:exon2:c.T76C:p.L26L,Cdh19:NM_001356415:exon3:c.T76C:p.L26L"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.77843896	1	0.5987229	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	111862113	12A2p6	cell line	sgMsh2	111862113	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.145	291	0	0	NA	exonic	Dsel	frameshift deletion	Dsel:NM_001081316:exon2:c.691delG:p.A231Pfs*5	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.675890115	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr1	111862141	12A2p6	cell line	sgMsh2	111862141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	275	0	0	NA	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.T663A:p.A221A	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	2.67E-09	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.245	312	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M2_p20	chr1	118543290	12A2p6	cell line	sgMsh2	118543290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	121	0	0	NA	exonic	Clasp1	synonymous SNV	"Clasp1:NM_001293301:exon23:c.A2472G:p.E824E,Clasp1:NM_001359340:exon24:c.A2499G:p.E833E,Clasp1:NM_029709:exon24:c.A2496G:p.E832E,Clasp1:NM_001359338:exon25:c.A2523G:p.E841E,Clasp1:NM_001359341:exon25:c.A2607G:p.E869E,Clasp1:NM_001359342:exon25:c.A2604G:p.E868E,Clasp1:NM_001359346:exon25:c.A2523G:p.E841E,Clasp1:NM_001359330:exon26:c.A2631G:p.E877E,Clasp1:NM_001359336:exon26:c.A2547G:p.E849E,Clasp1:NM_001359339:exon26:c.A2631G:p.E877E,Clasp1:NM_001359343:exon26:c.A2586G:p.E862E,Clasp1:NM_001359345:exon26:c.A2547G:p.E849E,Clasp1:NM_001293300:exon27:c.A2655G:p.E885E,Clasp1:NM_001359329:exon27:c.A2694G:p.E898E,Clasp1:NM_001359334:exon27:c.A2694G:p.E898E,Clasp1:NM_001359335:exon27:c.A2694G:p.E898E,Clasp1:NM_001359337:exon27:c.A2655G:p.E885E,Clasp1:NM_001359347:exon27:c.A1425G:p.E475E,Clasp1:NM_001359328:exon28:c.A2718G:p.E906E,Clasp1:NM_001359331:exon28:c.A2718G:p.E906E"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999452	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	71	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9983971	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	119617410	12A2p6	cell line	sgMsh2	119617410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	310	0	0	NA	exonic	Epb41l5	nonsynonymous SNV	"Epb41l5:NM_001113416:exon9:c.A668G:p.K223R,Epb41l5:NM_145506:exon9:c.A668G:p.K223R"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.16E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	286	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.79E-09	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr1	120063231	12A2p6	cell line	sgMsh2	120063231	G	T	SNV	Mutect2;Vardict	2	0.177	26	0	0	NA	exonic	Sctr	nonsynonymous SNV	"Sctr:NM_001311077:exon13:c.G1293T:p.K431N,Sctr:NM_001012322:exon14:c.G1344T:p.K448N"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.825052072	1	0.8607029	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	120485708	12A2p6	cell line	sgMsh2	120485708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	251	0	0	NA	exonic	Marco	synonymous SNV	Marco:NM_010766:exon10:c.A879G:p.P293P	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.94158485	1	0.9999987	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr1	121312209	12A2p6	cell line	sgMsh2	121312209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	214	0	0	NA	exonic	Insig2	nonsynonymous SNV	"Insig2:NM_001271532:exon2:c.G37A:p.A13T,Insig2:NM_001271531:exon3:c.G361A:p.A121T,Insig2:NM_001357251:exon3:c.G361A:p.A121T,Insig2:NM_133748:exon3:c.G361A:p.A121T,Insig2:NM_178082:exon3:c.G361A:p.A121T"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	135	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999787	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.214	279	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	2.62E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	121	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999452	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	156	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999948	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998923	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	326	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.05E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	299	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.33E-09	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	104	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998272	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	60	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9966365	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M2_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	107	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998589	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	195	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9998289	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	65	0	0	NA	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9971814	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	23	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9605344	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	134309689	12A2p6	cell line	sgMsh2	134309689	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	46	0	0	NA	exonic	Ppfia4	frameshift deletion	"Ppfia4:NM_001144855:exon23:c.2871delG:p.L958Sfs*47,Ppfia4:NM_001374777:exon24:c.2871delG:p.L958Sfs*47"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr1	134350215	12A2p6	cell line	sgMsh2	134350215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	171	0	0	NA	exonic	Tmem183a	synonymous SNV	"Tmem183a:NM_001042485:exon7:c.T807C:p.C269C,Tmem183a:NM_020588:exon7:c.T810C:p.C270C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999981	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.289	210	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.289	210	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	135469807	12A2p6	cell line	sgMsh2	135469807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	71	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon7:c.A2623G:p.M875V	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9983971	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	135883932	12A2p6	cell line	sgMsh2	135883932	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	105	0	0	NA	exonic	Pkp1	synonymous SNV	"Pkp1:NM_001313701:exon6:c.C1200T:p.D400D,Pkp1:NM_019645:exon6:c.C1200T:p.D400D"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998385	GGT	synonymous	NA	NA	NA	NA
M2_p20	chr1	138287941	12A2p6	cell line	sgMsh2	138287941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	279	0	0	NA	exonic	Atp6v1g3	nonsynonymous SNV	Atp6v1g3:NM_177397:exon3:c.A338G:p.N113S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9998773	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139062915	12A2p6	cell line	sgMsh2	139062915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	272	0	0	NA	exonic	Dennd1b	nonsynonymous SNV	"Dennd1b:NM_181347:exon8:c.T331C:p.Y111H,Dennd1b:NM_001166501:exon9:c.T556C:p.Y186H"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	3.04E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139323325	12A2p6	cell line	sgMsh2	139323325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	180	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon4:c.A887G:p.H296R	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.999999	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139447488	12A2p6	cell line	sgMsh2	139447488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	213	0	0	NA	exonic	Zbtb41	synonymous SNV	Zbtb41:NM_172643:exon11:c.A2685T:p.T895T	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.871665183	1	0.9986095	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	139489652	12A2p6	cell line	sgMsh2	139489652	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	119	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon23:c.T8386C:p.F2796L	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9996099	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139489769	12A2p6	cell line	sgMsh2	139489769	A	C	SNV	Mutect2;Vardict	2	0.04	156	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon23:c.A8503C:p.K2835Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.186452446	3	1.47E-09	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139490428	12A2p6	cell line	sgMsh2	139490428	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	330	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon25:c.T8894G:p.V2965G	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.783100271	2	0.6928089	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139491572	12A2p6	cell line	sgMsh2	139491572	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	153	0	0	NA	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon26:c.C8974T:p.L2992L	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.279678668	3	0.9999974	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr1	139491578	12A2p6	cell line	sgMsh2	139491578	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	149	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon26:c.C8980T:p.L2994F	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.242388179	3	0.9999998	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	201	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	401	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	1.16E-09	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	205	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	TTT	synonymous	NA	NA	NA	NA
M2_p20	chr1	146682578	12A2p6	cell line	sgMsh2	146682578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	135	0	0	NA	exonic	Brinp3	nonsynonymous SNV	"Brinp3:NM_001145807:exon3:c.A239G:p.E80G,Brinp3:NM_153539:exon3:c.A239G:p.E80G,Brinp3:NM_001357571:exon4:c.A239G:p.E80G"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9985116	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	150380361	12A2p6	cell line	sgMsh2	150380361	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	222	0	0	NA	exonic	Odr4	nonsynonymous SNV	"Odr4:NM_001077237:exon8:c.A632C:p.N211T,Odr4:NM_001357579:exon9:c.A485C:p.N162T,Odr4:NM_145511:exon9:c.A728C:p.N243T"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.447485869	2	0.9290759	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	48	0	0	NA	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	1	0.9924671	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	104	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998272	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	186	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999993	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	151361555	12A2p6	cell line	sgMsh2	151361555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	103	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001039512:exon13:c.A1469G:p.Y490C,Ivns1abp:NM_001359262:exon13:c.A1469G:p.Y490C,Ivns1abp:NM_001359263:exon13:c.A752G:p.Y251C,Ivns1abp:NM_054102:exon14:c.A1595G:p.Y532C"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998151	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	151403818	12A2p6	cell line	sgMsh2	151403818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	239	0	0	NA	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon9:c.T1238A:p.I413N	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	2.00E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	216	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	52	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9942402	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	153904660	12A2p6	cell line	sgMsh2	153904660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	131	0	0	NA	exonic	Glul	nonsynonymous SNV	Glul:NM_008131:exon3:c.T290C:p.V97A	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999721	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	383	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	160	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.853019939	1	0.986834	AAG	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr1	158362623	12A2p6	cell line	sgMsh2	158362623	G	-	Deletion	Strelka2;Vardict	2	0.2308	13	0	0	NA	exonic	Astn1	frameshift deletion	"Astn1:NM_001205204:exon1:c.41delG:p.P16Rfs*37,Astn1:NM_007495:exon1:c.41delG:p.P16Rfs*37"	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	CTG	9	CTGCTGCTG	-1
M2_p20	chr1	158845128	12A2p6	cell line	sgMsh2	158845128	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	173	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon9:c.G3244A:p.V1082I	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9979885	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	159327154	12A2p6	cell line	sgMsh2	159327154	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	409	0	0	NA	exonic	Cop1	frameshift deletion	"Cop1:NM_001360878:exon17:c.1919delA:p.N642Tfs*2,Cop1:NM_011931:exon17:c.1931delA:p.N646Tfs*2"	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	268	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.839036005	1	0.9920694	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	162697771	12A2p6	cell line	sgMsh2	162697771	A	G	SNV	Mutect2;Vardict	2	0.133	43	0	0	NA	exonic	Prrc2c	nonsynonymous SNV	Prrc2c:NM_001081290:exon19:c.T5543C:p.I1848T	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.619954382	2	0.748223	AAT	nonsynonymous	ATGG	8	ATGGATGG	NA
M2_p20	chr1	162710761	12A2p6	cell line	sgMsh2	162710761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	119	0	0	NA	exonic	Prrc2c	synonymous SNV	Prrc2c:NM_001081290:exon12:c.T1320C:p.P440P	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	0.9962129	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	270	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.894971739	1	0.9999578	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	244	0	0	NA	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.45E-08	CCA	synonymous	NA	NA	NA	NA
M2_p20	chr1	165392216	12A2p6	cell line	sgMsh2	165392216	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	313	0	0	NA	exonic	Dcaf6	nonsynonymous SNV	Dcaf6:NM_028759:exon8:c.T920C:p.V307A	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.200436379	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	169	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999979	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	121	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999452	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	118	0	0	NA	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.904294361	1	0.9966826	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	59	0	0	NA	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9774043	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr1	169506154	12A2p6	cell line	sgMsh2	169506154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	90	0	0	NA	exonic	Nuf2	synonymous SNV	"Nuf2:NM_023284:exon12:c.T952C:p.L318L,Nuf2:NM_001355159:exon13:c.T952C:p.L318L"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	0.9784208	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr1	170004799	12A2p6	cell line	sgMsh2	170004799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	155	0	0	NA	exonic	Ddr2	nonsynonymous SNV	Ddr2:NM_022563:exon5:c.C421T:p.L141F	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.829713383	1	0.9518686	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	183	0	0	NA	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999992	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr1	171258815	12A2p6	cell line	sgMsh2	171258815	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	119	0	0	NA	exonic	Adamts4	frameshift deletion	Adamts4:NM_172845:exon9:c.2139delG:p.S716Lfs*9	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	216	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	171356777	12A2p6	cell line	sgMsh2	171356777	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	295	0	0	NA	exonic	Pfdn2	synonymous SNV	"Pfdn2:NM_001360824:exon3:c.G237T:p.V79V,Pfdn2:NM_001360825:exon3:c.G93T:p.V31V,Pfdn2:NM_011070:exon3:c.G237T:p.V79V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.461469803	2	0.9963639	TGG	synonymous	NA	NA	NA	NA
M2_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	93	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.661906182	2	0.950169	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.104	72	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.484776359	2	0.9384602	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	396	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	345	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2	2	0.076	266	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.354259647	3	0.9999877	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	300	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	1.31E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr1	173937914	12A2p6	cell line	sgMsh2	173937914	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	178	0	0	NA	exonic	Ifi203	nonsynonymous SNV	"Ifi203:NM_001302649:exon3:c.A93C:p.K31N,Ifi203:NM_001302650:exon3:c.A93C:p.K31N,Ifi203:NM_001302651:exon3:c.A93C:p.K31N"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999982	CTT	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M2_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	317	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.647922248	2	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	174159275	12A2p6	cell line	sgMsh2	174159275	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	358	0	0	NA	exonic	Olfr420	frameshift deletion	Olfr420:NM_146305:exon1:c.501delT:p.C169Vfs*28	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.988197962	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr1	174193632	12A2p6	cell line	sgMsh2	174193632	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.228	246	0	0	NA	exonic	Spta1	frameshift insertion	Spta1:NM_011465:exon14:c.1776dupA:p.T594Nfs*4	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTA	frameshift	A	5	AAAAA	1
M2_p20	chr1	174231386	12A2p6	cell line	sgMsh2	174231386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	98	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon42:c.A5886G:p.L1962L	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997409	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr1	174430463	12A2p6	cell line	sgMsh2	174430463	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	200	0	0	NA	exonic	Olfr414	frameshift deletion	Olfr414:NM_146761:exon1:c.34delT:p.F12Lfs*25	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	157	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999952	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	175647154	12A2p6	cell line	sgMsh2	175647154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	190	0	0	NA	exonic	Kmo	nonsynonymous SNV	Kmo:NM_133809:exon6:c.A403G:p.K135E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.554696026	2	0.9999988	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	176756177	12A2p6	cell line	sgMsh2	176756177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	225	0	0	NA	exonic	Cep170	nonsynonymous SNV	"Cep170:NM_001368872:exon11:c.A2191G:p.M731V,Cep170:NM_001368873:exon12:c.A2341G:p.M781V,Cep170:NM_001099637:exon13:c.A2635G:p.M879V"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.568679959	2	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	93	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996368	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr1	179752809	12A2p6	cell line	sgMsh2	179752809	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	276	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon33:c.T5827G:p.L1943V	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.699196671	2	0.9997789	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	108	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998681	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	149	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9997292	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9964023	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	111	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M2_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	66	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr1	187117425	12A2p6	cell line	sgMsh2	187117425	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Spata17	synonymous SNV	Spata17:NM_028848:exon7:c.A612G:p.P204P	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.997901	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	165	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999972	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	189295690	12A2p6	cell line	sgMsh2	189295690	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	117	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon3:c.G379A:p.A127T,Kcnk2:NM_001281847:exon3:c.G343A:p.A115T,Kcnk2:NM_010607:exon3:c.G334A:p.A112T"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.85768125	1	0.97781	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	189653885	12A2p6	cell line	sgMsh2	189653885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	237	0	0	NA	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon13:c.A6197G:p.E2066G	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.829713383	1	0.9757868	TTC	nonsynonymous	TTCT	8	TTCTTTCT	NA
M2_p20	chr1	191778449	12A2p6	cell line	sgMsh2	191778449	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	273	0	0	NA	exonic	Lpgat1	nonsynonymous SNV	"Lpgat1:NM_001134829:exon8:c.G1145T:p.W382L,Lpgat1:NM_172266:exon8:c.G1028T:p.W343L"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	2.91E-09	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	210	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	193323791	12A2p6	cell line	sgMsh2	193323791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	100	0	0	NA	exonic	Lamb3	nonsynonymous SNV	"Lamb3:NM_001277928:exon6:c.T427C:p.W143R,Lamb3:NM_008484:exon6:c.T427C:p.W143R"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997736	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	194780649	12A2p6	cell line	sgMsh2	194780649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	152	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon13:c.A2723G:p.Y908C	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.755132405	2	0.7231219	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr1	194801047	12A2p6	cell line	sgMsh2	194801047	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	211	0	0	NA	exonic	Plxna2	stopgain	Plxna2:NM_008882:exon26:c.G4665A:p.W1555X	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.195180026	NA	1	0.783100271	1	0.5177411	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	3366807	12A2p6	cell line	sgMsh2	3366807	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	22	0	0	NA	exonic	Ppp1r14c	synonymous SNV	Ppp1r14c:NM_133485:exon1:c.G141T:p.S47S	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.77843896	1	0.8073507	CGG	synonymous	NA	NA	NA	NA
M2_p20	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	141	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999858	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	101	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997884	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	4106413	12A2p6	cell line	sgMsh2	4106413	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	90	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon26:c.C2728T:p.H910Y,Mthfd1l:NM_001170786:exon26:c.C2728T:p.H910Y,Mthfd1l:NM_172308:exon26:c.C2728T:p.H910Y"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995553	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	164	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.999997	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	5040876	12A2p6	cell line	sgMsh2	5040876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	75	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon11:c.T1802C:p.L601P,Syne1:NM_001079686:exon49:c.T7985C:p.L2662P,Syne1:NM_001347711:exon140:c.T25388C:p.L8463P,Syne1:NM_001347732:exon140:c.T25352C:p.L8451P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9987762	GAG	nonsynonymous	TGT	8	TGTTGTTG	NA
M2_p20	chr10	5185785	12A2p6	cell line	sgMsh2	5185785	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	69	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001079686:exon3:c.T484A:p.L162I,Syne1:NM_001347711:exon93:c.T17803A:p.L5935I,Syne1:NM_001347732:exon93:c.T17782A:p.L5928I"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9981657	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	251	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	9.43E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	281	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	2.11E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	227	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	4.36E-08	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	11191004	12A2p6	cell line	sgMsh2	11191004	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	296	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon23:c.A4144G:p.K1382E,Shprh:NM_001284354:exon23:c.A4144G:p.K1382E,Shprh:NM_172937:exon23:c.A4144G:p.K1382E"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.242388179	3	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	11290450	12A2p6	cell line	sgMsh2	11290450	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	265	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.T915A:p.N305K,Fbxo30:NM_027968:exon2:c.T915A:p.N305K"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.685212737	2	0.9999083	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	228	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	4.08E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	11609430	12A2p6	cell line	sgMsh2	11609430	G	T	SNV	Mutect2;MuSe;Vardict	3	0.092	336	0	0	NA	exonic	Timm8a1	stopgain	Timm8a1:NM_013898:exon1:c.G133T:p.E45X	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.428840625	2	0.5008195	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	12941170	12A2p6	cell line	sgMsh2	12941170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	157	0	0	NA	exonic	Stx11	nonsynonymous SNV	"Stx11:NM_001163590:exon2:c.A809G:p.K270R,Stx11:NM_001163591:exon2:c.A809G:p.K270R,Stx11:NM_029075:exon3:c.A809G:p.K270R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.727164538	2	0.9284583	CTT	nonsynonymous	TTC	11	TTCTTCTTCTT	NA
M2_p20	chr10	13239925	12A2p6	cell line	sgMsh2	13239925	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	241	0	0	NA	exonic	Phactr2	synonymous SNV	"Phactr2:NM_001033257:exon8:c.A1384C:p.R462R,Phactr2:NM_001359294:exon8:c.A1237C:p.R413R,Phactr2:NM_001195065:exon9:c.A1573C:p.R525R,Phactr2:NM_001195066:exon9:c.A1363C:p.R455R,Phactr2:NM_001195096:exon9:c.A1396C:p.R466R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.76E-08	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr10	13829244	12A2p6	cell line	sgMsh2	13829244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	214	0	0	NA	exonic	Aig1	nonsynonymous SNV	"Aig1:NM_001347362:exon2:c.T296C:p.V99A,Aig1:NM_025446:exon2:c.T296C:p.V99A"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	173	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999984	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	14131156	12A2p6	cell line	sgMsh2	14131156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	397	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.T3497C:p.M1166T,Hivep2:NM_001358782:exon5:c.T3497C:p.M1166T,Hivep2:NM_001358783:exon8:c.T3497C:p.M1166T"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	94	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.978875339	1	0.9993259	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	152	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999932	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	18696606	12A2p6	cell line	sgMsh2	18696606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	206	0	0	NA	exonic	Arfgef3	nonsynonymous SNV	Arfgef3:NM_001033258:exon4:c.G298A:p.A100T	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	39	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9862522	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	20136987	12A2p6	cell line	sgMsh2	20136987	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	144	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon27:c.G3876T:p.K1292N	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999884	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	99	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9997578	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	92	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996115	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	24596867	12A2p6	cell line	sgMsh2	24596867	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	133	0	0	NA	exonic	Ccn2	nonsynonymous SNV	Ccn2:NM_010217:exon4:c.C674T:p.T225I	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.815729449	1	0.8957282	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.258	209	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	181	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999973	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	25994095	12A2p6	cell line	sgMsh2	25994095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	168	0	0	NA	exonic	Tmem200a	nonsynonymous SNV	"Tmem200a:NM_029881:exon2:c.A275G:p.D92G,Tmem200a:NM_001358814:exon3:c.A275G:p.D92G"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.94158485	1	0.9999319	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	116	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	26981624	12A2p6	cell line	sgMsh2	26981624	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	143	0	0	NA	exonic	Lama2	synonymous SNV	Lama2:NM_008481:exon64:c.C9228T:p.T3076T	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999876	TGG	synonymous	NA	NA	NA	NA
M2_p20	chr10	28782343	12A2p6	cell line	sgMsh2	28782343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	158	0	0	NA	exonic	Themis	nonsynonymous SNV	"Themis:NM_001374699:exon4:c.G1365T:p.W455C,Themis:NM_178666:exon4:c.G1365T:p.W455C,Themis:NM_001305663:exon5:c.G1098T:p.W366C"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999816	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	108	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr10	30834310	12A2p6	cell line	sgMsh2	30834310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	102	0	0	NA	exonic	Hey2	nonsynonymous SNV	Hey2:NM_013904:exon5:c.T446C:p.L149P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998022	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	150	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.825052072	1	0.9369916	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr10	39828472	12A2p6	cell line	sgMsh2	39828472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	92	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon14:c.A6513G:p.Q2171Q	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9966607	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr10	40227566	12A2p6	cell line	sgMsh2	40227566	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	exonic	Rpf2	nonsynonymous SNV	"Rpf2:NM_001042556:exon8:c.A490C:p.S164R,Rpf2:NM_023323:exon8:c.A589C:p.S197R"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.885649116	1	0.9979286	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	40227594	12A2p6	cell line	sgMsh2	40227594	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	167	0	0	NA	exonic	Rpf2	synonymous SNV	"Rpf2:NM_001042556:exon8:c.T462C:p.T154T,Rpf2:NM_023323:exon8:c.T561C:p.T187T"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.24704949	3	3.47E-08	CAG	synonymous	CAGTG	18	CAGTGCAGTGAAGTGCAG	NA
M2_p20	chr10	41232230	12A2p6	cell line	sgMsh2	41232230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	311	0	0	NA	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon18:c.A1973G:p.K658R	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.759793716	2	0.9599795	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	41253689	12A2p6	cell line	sgMsh2	41253689	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	187	0	0	NA	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon14:c.T1534G:p.L512V	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.922939606	1	0.9999075	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	139	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999837	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	66	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9977547	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr10	42957647	12A2p6	cell line	sgMsh2	42957647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	108	0	0	NA	exonic	Scml4	nonsynonymous SNV	"Scml4:NM_001359265:exon7:c.T956G:p.L319R,Scml4:NM_001359264:exon8:c.T1376G:p.L459R,Scml4:NM_172938:exon9:c.T1130G:p.L377R"	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998681	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	95	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9996827	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	43876515	12A2p6	cell line	sgMsh2	43876515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	83	0	0	NA	exonic	Qrsl1	synonymous SNV	Qrsl1:NM_001081054:exon10:c.C1311T:p.R437R	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.550034714	2	0.9945492	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr10	50700087	12A2p6	cell line	sgMsh2	50700087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	211	0	0	NA	exonic	Ascc3	synonymous SNV	Ascc3:NM_198007:exon15:c.T2437C:p.L813L	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	289	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.65E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	50981576	12A2p6	cell line	sgMsh2	50981576	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	70	0	0	NA	exonic	Sim1	nonsynonymous SNV	Sim1:NM_011376:exon10:c.G1421A:p.G474D	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9982853	GGC	nonsynonymous	AGGC	11	AGGCAGGCAGG	NA
M2_p20	chr10	51725877	12A2p6	cell line	sgMsh2	51725877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	113	0	0	NA	exonic	Rfx6	nonsynonymous SNV	"Rfx6:NM_177306:exon14:c.A1601G:p.N534S,Rfx6:NM_001159389:exon17:c.A2393G:p.N798S"	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.564018648	2	0.9994681	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	127	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999634	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	52436631	12A2p6	cell line	sgMsh2	52436631	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	244	0	0	NA	exonic	Nus1	synonymous SNV	Nus1:NM_030250:exon5:c.G858A:p.R286R	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.45E-08	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	264	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.964891406	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	58478457	12A2p6	cell line	sgMsh2	58478457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	76	0	0	NA	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A4998G:p.E1666E	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr10	59222288	12A2p6	cell line	sgMsh2	59222288	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.336	55	0	0	NA	exonic	Sowahc	frameshift deletion	Sowahc:NM_172939:exon1:c.245delC:p.P84Rfs*14	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9894727	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	59425458	12A2p6	cell line	sgMsh2	59425458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	172	0	0	NA	exonic	Oit3	synonymous SNV	Oit3:NM_010959:exon8:c.A1386G:p.S462S	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999983	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr10	59448846	12A2p6	cell line	sgMsh2	59448846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	128	0	0	NA	exonic	Mcu	nonsynonymous SNV	Mcu:NM_001033259:exon8:c.C988T:p.L330F	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999658	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	202	0	0	NA	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	62429460	12A2p6	cell line	sgMsh2	62429460	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	60	0	0	NA	exonic	Supv3l1	nonsynonymous SNV	"Supv3l1:NM_001359806:exon15:c.T1583C:p.V528A,Supv3l1:NM_181423:exon15:c.T2300C:p.V767A"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.73648716	1	6.82E-06	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	102	0	0	NA	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.988197962	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr10	62840008	12A2p6	cell line	sgMsh2	62840008	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	0	0	NA	exonic	Tet1	nonsynonymous SNV	Tet1:NM_001253857:exon4:c.A2288T:p.N763I	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.922939606	1	0.9999608	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	414	0	0	NA	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	122	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999488	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	64088473	12A2p6	cell line	sgMsh2	64088473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	191	0	0	NA	exonic	Lrrtm3	nonsynonymous SNV	Lrrtm3:NM_178678:exon2:c.A914G:p.N305S	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	64487470	12A2p6	cell line	sgMsh2	64487470	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	221	0	0	NA	exonic	Ctnna3	synonymous SNV	"Ctnna3:NM_001164519:exon6:c.T582C:p.N194N,Ctnna3:NM_001164376:exon11:c.T1383C:p.N461N,Ctnna3:NM_177612:exon11:c.T1383C:p.N461N"	10qB5.1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr10	64945940	12A2p6	cell line	sgMsh2	64945940	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	323	0	0	NA	exonic	Ctnna3	synonymous SNV	"Ctnna3:NM_001164519:exon11:c.T1380C:p.H460H,Ctnna3:NM_001164376:exon16:c.T2181C:p.H727H,Ctnna3:NM_177612:exon16:c.T2181C:p.H727H"	10qB5.1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.07E-09	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr10	68096565	12A2p6	cell line	sgMsh2	68096565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	268	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A3506G:p.N1169S	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.904294361	1	0.9999811	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	238	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	2.13E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	69822286	12A2p6	cell line	sgMsh2	69822286	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	109	0	0	NA	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon6:c.A541C:p.K181Q,Ank3:NM_170688:exon6:c.A541C:p.K181Q,Ank3:NM_170689:exon6:c.A541C:p.K181Q,Ank3:NM_170690:exon6:c.A541C:p.K181Q,Ank3:NM_170728:exon6:c.A541C:p.K181Q,Ank3:NM_170729:exon6:c.A541C:p.K181Q"	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.741148471	2	0.6795369	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	75646598	12A2p6	cell line	sgMsh2	75646598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	58	0	0	NA	exonic	Cabin1	nonsynonymous SNV	Cabin1:NM_172549:exon37:c.G6510T:p.Q2170H	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9961519	CCT	nonsynonymous	CTGG	8	CTGGCTGG	NA
M2_p20	chr10	75771476	12A2p6	cell line	sgMsh2	75771476	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	160	0	0	NA	exonic	Ddt	synonymous SNV	Ddt:NM_010027:exon3:c.T315G:p.A105A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.512744225	2	0.999671	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr10	75832028	12A2p6	cell line	sgMsh2	75832028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	0	0	NA	exonic	Gstt2	nonsynonymous SNV	Gstt2:NM_010361:exon5:c.G592A:p.E198K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9972517	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	75859492	12A2p6	cell line	sgMsh2	75859492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	391	0	0	NA	exonic	Mif	synonymous SNV	Mif:NM_010798:exon3:c.T333C:p.G111G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.727164538	2	0.9998532	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	142	0	0	NA	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999867	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr10	76182688	12A2p6	cell line	sgMsh2	76182688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	66	0	0	NA	exonic	Slc5a4a	nonsynonymous SNV	Slc5a4a:NM_133184:exon13:c.A1468G:p.M490V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	50	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9934126	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	165	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999972	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	76501071	12A2p6	cell line	sgMsh2	76501071	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	312	0	0	NA	exonic	Mcm3ap	synonymous SNV	Mcm3ap:NM_019434:exon19:c.G3918A:p.R1306R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.741148471	2	0.9945343	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	76	0	0	NA	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	344	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.02E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	200	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.936923539	1	0.9999793	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr10	78441188	12A2p6	cell line	sgMsh2	78441188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	250	0	0	NA	exonic	Pdxk	nonsynonymous SNV	Pdxk:NM_172134:exon10:c.A775G:p.T259A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.177129823	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.999891	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	78801841	12A2p6	cell line	sgMsh2	78801841	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	99	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.G1200T:p.E400D	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9997578	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M2_p20	chr10	79541595	12A2p6	cell line	sgMsh2	79541595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	70	0	0	NA	exonic	Mier2	nonsynonymous SNV	"Mier2:NM_001316699:exon13:c.T1523G:p.I508S,Mier2:NM_027422:exon13:c.T1517G:p.I506S"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.633938315	2	0.9233207	AAT	nonsynonymous	CCAATG	12	CCAATGCCAATG	NA
M2_p20	chr10	79612824	12A2p6	cell line	sgMsh2	79612824	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	29	0	0	NA	exonic	C2cd4c	frameshift deletion	"C2cd4c:NM_001168624:exon2:c.488delT:p.F163Sfs*38,C2cd4c:NM_198614:exon2:c.488delT:p.F163Sfs*38"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr10	79781134	12A2p6	cell line	sgMsh2	79781134	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	50	0	0	NA	exonic	Fstl3	synonymous SNV	Fstl3:NM_031380:exon4:c.T510G:p.A170A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9934126	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	44	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9901535	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80058105	12A2p6	cell line	sgMsh2	80058105	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.143	47	0	0	NA	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon31:c.C3449T:p.A1150V,Sbno2:NM_183426:exon31:c.C3452T:p.A1151V"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.666567493	2	0.6460395	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80137356	12A2p6	cell line	sgMsh2	80137356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	74	0	0	NA	exonic	Cbarp	nonsynonymous SNV	Cbarp:NM_001195268:exon1:c.A25G:p.T9A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.675890115	2	0.8393163	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80142540	12A2p6	cell line	sgMsh2	80142540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	25	0	0	NA	exonic	Atp5d	synonymous SNV	"Atp5d:NM_001347092:exon1:c.C75A:p.A25A,Atp5d:NM_025313:exon1:c.C75A:p.A25A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9653533	CCG	synonymous	GCC	8	GCCGCCGC	NA
M2_p20	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	222	0	0	NA	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.918278294	1	0.9999684	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	80287637	12A2p6	cell line	sgMsh2	80287637	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	31	0	0	NA	exonic	Dazap1	frameshift deletion	"Dazap1:NM_001122604:exon12:c.1147delC:p.A385Lfs*36,Dazap1:NM_001122605:exon12:c.1147delC:p.A385Lfs*36,Dazap1:NM_001378995:exon12:c.1150delC:p.A386Lfs*36,Dazap1:NM_133188:exon12:c.1144delC:p.A384Lfs*36"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	87	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9994555	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M2_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	63	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.927600917	1	0.9868416	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9704671	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.185	40	0	0	NA	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.862342561	1	0.9196256	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	47	0	0	NA	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9919449	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80326011	12A2p6	cell line	sgMsh2	80326011	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.166	66	0	0	NA	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon4:c.T446A:p.V149E	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.773777649	1	0.7182497	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9750382	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80360753	12A2p6	cell line	sgMsh2	80360753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	79	0	0	NA	exonic	Plk5	synonymous SNV	"Plk5:NM_001347124:exon9:c.C1038T:p.A346A,Plk5:NM_183152:exon9:c.C1050T:p.A350A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9990656	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Vardict	2	0.285	19	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9488776	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	189	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999994	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	122	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.750471093	2	0.655572	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	129	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80721625	12A2p6	cell line	sgMsh2	80721625	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	119	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon10:c.C872T:p.S291F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9989832	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	80804794	12A2p6	cell line	sgMsh2	80804794	C	-	Deletion	Strelka2;Vardict	2	0.25	24	0	0	NA	exonic	Sf3a2	frameshift deletion	Sf3a2:NM_013651:exon9:c.1438delC:p.P481Lfs*41	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	CCTCCC	14	CCTCCCCCTCCCCC	-1
M2_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	57	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9958841	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	81179776	12A2p6	cell line	sgMsh2	81179776	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	102	0	0	NA	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon7:c.C1130T:p.P377L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.316969157	3	0.9979483	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	73	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985994	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999985	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	81512051	12A2p6	cell line	sgMsh2	81512051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	113	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon4:c.T560C:p.M187T	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9994666	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	192	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr10	85629240	12A2p6	cell line	sgMsh2	85629240	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	292	0	0	NA	exonic	Btbd11	nonsynonymous SNV	"Btbd11:NM_001017525:exon5:c.C536T:p.S179F,Btbd11:NM_028709:exon7:c.C1943T:p.S648F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	4.78E-08	TCC	nonsynonymous	ATCC	8	ATCCATCC	NA
M2_p20	chr10	86694552	12A2p6	cell line	sgMsh2	86694552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	156	0	0	NA	exonic	Hsp90b1	nonsynonymous SNV	Hsp90b1:NM_011631:exon12:c.A1442G:p.N481S	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999948	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	109	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998767	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	130	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999702	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	202	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999993	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	92714090	12A2p6	cell line	sgMsh2	92714090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	140	0	0	NA	exonic	Nedd1	nonsynonymous SNV	Nedd1:NM_008682:exon4:c.T332C:p.L111P	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999848	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	94789743	12A2p6	cell line	sgMsh2	94789743	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	117	0	0	NA	exonic	Cep83	synonymous SNV	Cep83:NM_029852:exon16:c.A2014C:p.R672R	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.999567	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	144	0	0	NA	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999884	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	99124951	12A2p6	cell line	sgMsh2	99124951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	234	0	0	NA	exonic	Poc1b	nonsynonymous SNV	Poc1b:NM_027740:exon3:c.T221C:p.L74P	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	2.76E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	103173380	12A2p6	cell line	sgMsh2	103173380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	126	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	Lrriq1:NM_001163559:exon15:c.A3241G:p.T1081A	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999609	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	105829867	12A2p6	cell line	sgMsh2	105829867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	431	0	0	NA	exonic	Mettl25	nonsynonymous SNV	"Mettl25:NM_207522:exon3:c.A497G:p.D166G,Mettl25:NM_001359640:exon4:c.A62G:p.D21G,Mettl25:NM_001359642:exon4:c.A62G:p.D21G"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	85	0	0	NA	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.741148471	2	8.55E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	109767508	12A2p6	cell line	sgMsh2	109767508	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	173	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon15:c.G3179A:p.G1060E,Nav3:NM_001368815:exon15:c.G3179A:p.G1060E"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999984	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	110000122	12A2p6	cell line	sgMsh2	110000122	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	139	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon1:c.T98A:p.V33E,Nav3:NM_001368815:exon1:c.T98A:p.V33E"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999837	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	110949649	12A2p6	cell line	sgMsh2	110949649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	135	0	0	NA	exonic	Zdhhc17	nonsynonymous SNV	"Zdhhc17:NM_001359622:exon12:c.A1271G:p.D424G,Zdhhc17:NM_001359624:exon12:c.A485G:p.D162G,Zdhhc17:NM_172554:exon12:c.A1301G:p.D434G"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999787	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	112175594	12A2p6	cell line	sgMsh2	112175594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	188	0	0	NA	exonic	Caps2	nonsynonymous SNV	Caps2:NM_178278:exon2:c.T122C:p.L41P	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9727182	CTA	nonsynonymous	CCTA	8	CCTACCTA	NA
M2_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	129	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	116322645	12A2p6	cell line	sgMsh2	116322645	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	216	0	0	NA	exonic	Ptprb	synonymous SNV	Ptprb:NM_029928:exon7:c.T1620C:p.S540S	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.20509769	3	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	156	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999948	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	117787825	12A2p6	cell line	sgMsh2	117787825	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	107	0	0	NA	exonic	Nup107	stopgain	Nup107:NM_134010:exon4:c.C274T:p.Q92X	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998589	TGT	nonsynonymous	TG	8	TGTGTGTG	NA
M2_p20	chr10	120089680	12A2p6	cell line	sgMsh2	120089680	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	57	0	0	NA	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon12:c.T2791A:p.S931T	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9958841	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	114	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999121	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M2_p20	chr10	120949347	12A2p6	cell line	sgMsh2	120949347	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	97	0	0	NA	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon3:c.T1598A:p.L533H	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.727164538	2	0.7225856	AAG	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	137	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999814	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	236	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	2.42E-08	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr10	121654883	12A2p6	cell line	sgMsh2	121654883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	118	0	0	NA	exonic	D930020B18Rik	synonymous SNV	D930020B18Rik:NM_177335:exon2:c.T387C:p.A129A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999329	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr10	121870354	12A2p6	cell line	sgMsh2	121870354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	55	0	0	NA	exonic	Srgap1	nonsynonymous SNV	"Srgap1:NM_001081037:exon5:c.A646G:p.K216E,Srgap1:NM_001242411:exon5:c.A646G:p.K216E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.741148471	1	0.6065035	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	123032631	12A2p6	cell line	sgMsh2	123032631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	137	0	0	NA	exonic	Mon2	synonymous SNV	"Mon2:NM_001163024:exon12:c.T1516C:p.L506L,Mon2:NM_001163025:exon12:c.T1516C:p.L506L,Mon2:NM_153395:exon12:c.T1516C:p.L506L"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999814	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	166	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999974	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	66	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr10	126996371	12A2p6	cell line	sgMsh2	126996371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	155	0	0	NA	exonic	Ctdsp2	nonsynonymous SNV	"Ctdsp2:NM_146012:exon3:c.A245G:p.Q82R,Ctdsp2:NM_001113470:exon8:c.A698G:p.Q233R"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.717841915	2	0.9529875	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	234	0	0	NA	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr10	127297626	12A2p6	cell line	sgMsh2	127297626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	187	0	0	NA	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon18:c.T2237C:p.M746T,Mars1:NM_001171582:exon18:c.T2237C:p.M746T"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9986093	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	145	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.843697316	1	0.9733656	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	143	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9573328	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	102	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998022	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	128042008	12A2p6	cell line	sgMsh2	128042008	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	33	0	0	NA	exonic	Naca	nonsynonymous SNV	Naca:NM_001113199:exon3:c.C2908T:p.P970S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9795232	CCC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	255	0	0	NA	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	0.9999998	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr10	128210887	12A2p6	cell line	sgMsh2	128210887	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	73	0	0	NA	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.C590A:p.T197N	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9983233	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	128241324	12A2p6	cell line	sgMsh2	128241324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	89	0	0	NA	exonic	Timeless	nonsynonymous SNV	"Timeless:NM_001136082:exon6:c.T479C:p.L160P,Timeless:NM_001164080:exon6:c.T479C:p.L160P,Timeless:NM_001164081:exon6:c.T479C:p.L160P,Timeless:NM_011589:exon6:c.T479C:p.L160P"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9995242	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	128671299	12A2p6	cell line	sgMsh2	128671299	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	157	0	0	NA	exonic	Suox	nonsynonymous SNV	Suox:NM_173733:exon4:c.G859T:p.G287W	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999952	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129261443	12A2p6	cell line	sgMsh2	129261443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	547	0	0	NA	exonic	Olfr776	nonsynonymous SNV	Olfr776:NM_207559:exon1:c.A481T:p.I161F	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	0.73648716	2	0.9999869	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129463596	12A2p6	cell line	sgMsh2	129463596	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	118	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.G919A:p.V307I	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999329	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	191	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	111	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998923	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M2_p20	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	85	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129691213	12A2p6	cell line	sgMsh2	129691213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	176	0	0	NA	exonic	Olfr803	nonsynonymous SNV	Olfr803:NM_146554:exon1:c.G827T:p.S276I	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129768203	12A2p6	cell line	sgMsh2	129768203	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	160	0	0	NA	exonic	Olfr808	frameshift deletion	Olfr808:NM_146928:exon1:c.706delT:p.S237Pfs*6	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr10	129856980	12A2p6	cell line	sgMsh2	129856980	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T461A:p.I154N	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	271	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	317	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	130112718	12A2p6	cell line	sgMsh2	130112718	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	188	0	0	NA	exonic	Olfr823	nonsynonymous SNV	Olfr823:NM_146673:exon1:c.C71T:p.P24L	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	378	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	0	0	NA	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998848	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	3712167	12A2p6	cell line	sgMsh2	3712167	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	242	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001302631:exon7:c.A811G:p.T271A,Osbp2:NM_001302630:exon8:c.A685G:p.T229A,Osbp2:NM_001363164:exon9:c.A952G:p.T318A,Osbp2:NM_001363163:exon10:c.A2053G:p.T685A,Osbp2:NM_152818:exon10:c.A2044G:p.T682A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	196	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	48	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	2	1	1	0.9924671	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	5082339	12A2p6	cell line	sgMsh2	5082339	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.124	71	0	0	NA	exonic	Ewsr1	synonymous SNV	"Ewsr1:NM_001283061:exon8:c.C888T:p.G296G,Ewsr1:NM_001283062:exon8:c.C888T:p.G296G,Ewsr1:NM_001283063:exon8:c.C888T:p.G296G,Ewsr1:NM_001362617:exon8:c.C888T:p.G296G,Ewsr1:NM_007968:exon8:c.C888T:p.G296G,Ewsr1:NM_001362612:exon9:c.C906T:p.G302G,Ewsr1:NM_001362613:exon9:c.C909T:p.G303G,Ewsr1:NM_001362614:exon9:c.C906T:p.G302G,Ewsr1:NM_001362615:exon9:c.C903T:p.G301G,Ewsr1:NM_001362616:exon9:c.C906T:p.G302G,Ewsr1:NM_001362618:exon9:c.C906T:p.G302G"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.578002581	2	0.9791886	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr11	5717594	12A2p6	cell line	sgMsh2	5717594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	58	0	0	NA	exonic	Urgcp	nonsynonymous SNV	"Urgcp:NM_001361591:exon4:c.A743G:p.D248G,Urgcp:NM_001361592:exon4:c.A647G:p.D216G,Urgcp:NM_001361589:exon5:c.A743G:p.D248G,Urgcp:NM_001077661:exon6:c.A743G:p.D248G,Urgcp:NM_001361590:exon6:c.A743G:p.D248G,Urgcp:NM_178623:exon6:c.A872G:p.D291G,Urgcp:NM_001361588:exon7:c.A743G:p.D248G"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.69453536	2	0.6381785	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	183	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999957	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	121	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.871665183	1	0.9883868	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	6415926	12A2p6	cell line	sgMsh2	6415926	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	121	0	0	NA	exonic	Ppia	nonsynonymous SNV	Ppia:NM_008907:exon1:c.G16A:p.V6M	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999452	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	199	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	7064008	12A2p6	cell line	sgMsh2	7064008	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	48	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon1:c.T409A:p.C137S	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9924671	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	7144751	12A2p6	cell line	sgMsh2	7144751	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	101	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon9:c.C1676T:p.T559I	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.363582269	3	0.9680086	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	144	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9991464	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	76	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr11	17947388	12A2p6	cell line	sgMsh2	17947388	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	236	0	0	NA	exonic	Etaa1	nonsynonymous SNV	"Etaa1:NM_001362970:exon5:c.A269C:p.D90A,Etaa1:NM_026576:exon5:c.A728C:p.D243A"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.671228804	2	0.999903	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	83	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	0.9992341	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	245	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.36E-08	GCA	synonymous	NA	NA	NA	NA
M2_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	216	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	21996529	12A2p6	cell line	sgMsh2	21996529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	35	0	0	NA	exonic	Otx1	nonsynonymous SNV	Otx1:NM_011023:exon5:c.A779G:p.H260R	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9820643	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	22007167	12A2p6	cell line	sgMsh2	22007167	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	65	0	0	NA	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon24:c.G3521T:p.R1174L,Ehbp1:NM_153078:exon24:c.G3446T:p.R1149L"	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.885649116	1	0.9695259	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	22973298	12A2p6	cell line	sgMsh2	22973298	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	23	0	0	NA	exonic	Zrsr1	nonsynonymous SNV	Zrsr1:NM_011663:exon1:c.A71C:p.E24A	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9605344	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	22997151	12A2p6	cell line	sgMsh2	22997151	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.238	123	0	0	NA	exonic	Cct4	nonsynonymous SNV	Cct4:NM_009837:exon6:c.T641A:p.L214H	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999521	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	253	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	3.21E-08	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M2_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	169	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999979	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	394	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	136	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.745809782	2	0.7548554	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	32422292	12A2p6	cell line	sgMsh2	32422292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	53	0	0	NA	exonic	Sh3pxd2b	nonsynonymous SNV	Sh3pxd2b:NM_177364:exon13:c.A1458C:p.K486N	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	2	1	1	0.9946143	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	141	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999858	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	204	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	292	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.53E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	94	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	0.9912224	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	336	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	1.11E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	114	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999121	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	35797587	12A2p6	cell line	sgMsh2	35797587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	90	0	0	NA	exonic	Fbll1	nonsynonymous SNV	Fbll1:NM_001004147:exon1:c.A848G:p.E283G	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9285898	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	66	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	222	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.871665183	1	0.998871	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M2_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	196	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	174	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.904294361	1	0.999517	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	158	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999955	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	327	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.05E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	258	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	6.25E-09	AAC	synonymous	AACA	8	AACAAACA	NA
M2_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9989306	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	46238053	12A2p6	cell line	sgMsh2	46238053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	66	0	0	NA	exonic	Fndc9	nonsynonymous SNV	Fndc9:NM_177075:exon2:c.T398C:p.L133P	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	46240065	12A2p6	cell line	sgMsh2	46240065	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	147	0	0	NA	exonic	Cyfip2	nonsynonymous SNV	"Cyfip2:NM_001252459:exon23:c.C2612G:p.T871S,Cyfip2:NM_001252460:exon23:c.C2612G:p.T871S,Cyfip2:NM_133769:exon23:c.C2612G:p.T871S"	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999828	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998681	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	394	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	411	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	86	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9994174	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	35	0	0	NA	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9820643	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	224	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9942402	GCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	50883265	12A2p6	cell line	sgMsh2	50883265	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	84	0	0	NA	exonic	Zfp454	stopgain	"Zfp454:NM_001382452:exon3:c.G70T:p.G24X,Zfp454:NM_001382453:exon3:c.G70T:p.G24X,Zfp454:NM_001382456:exon3:c.G70T:p.G24X,Zfp454:NM_001382457:exon3:c.G73T:p.G25X,Zfp454:NM_001382449:exon4:c.G169T:p.G57X,Zfp454:NM_001382450:exon4:c.G169T:p.G57X,Zfp454:NM_001382451:exon4:c.G172T:p.G58X,Zfp454:NM_172794:exon4:c.G172T:p.G58X"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	50969374	12A2p6	cell line	sgMsh2	50969374	G	A	SNV	Mutect2;Vardict	2	0.03	610	0	0	NA	exonic	Olfr1378	nonsynonymous SNV	Olfr1378:NM_146910:exon1:c.G355A:p.A119T	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.139839334	3	1	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	51007844	12A2p6	cell line	sgMsh2	51007844	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	0	0	NA	exonic	Olfr51	nonsynonymous SNV	Olfr51:NM_146909:exon1:c.C871A:p.L291M	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	175	0	0	NA	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999986	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	51600581	12A2p6	cell line	sgMsh2	51600581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon12:c.A1316G:p.K439R,Phykpl:NM_028398:exon12:c.A1316G:p.K439R"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997736	AAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	106	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.999849	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	215	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr11	53537199	12A2p6	cell line	sgMsh2	53537199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	54	0	0	NA	exonic	Septin8	nonsynonymous SNV	"Septin8:NM_001252332:exon7:c.T839C:p.L280P,Septin8:NM_001252333:exon7:c.T833C:p.L278P,Septin8:NM_001347496:exon7:c.T839C:p.L280P,Septin8:NM_001361968:exon7:c.T833C:p.L278P,Septin8:NM_001361969:exon7:c.T653C:p.L218P,Septin8:NM_033144:exon7:c.T839C:p.L280P"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9949643	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	104	0	0	NA	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998272	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	53954866	12A2p6	cell line	sgMsh2	53954866	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	201	0	0	NA	exonic	Slc22a21	synonymous SNV	"Slc22a21:NM_001362202:exon6:c.T570A:p.L190L,Slc22a21:NM_019723:exon7:c.T1098A:p.L366L"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.685212737	2	0.9987148	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr11	54660903	12A2p6	cell line	sgMsh2	54660903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	185	0	0	NA	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon19:c.A2581G:p.T861A,Rapgef6:NM_001252494:exon20:c.A2596G:p.T866A,Rapgef6:NM_001252496:exon20:c.A2596G:p.T866A"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9997545	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	265	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	2	1	1	4.27E-09	AAC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr11	55262755	12A2p6	cell line	sgMsh2	55262755	C	-	Deletion	Mutect2;Strelka2	2	0.259	109	0	0	NA	exonic	Fat2	frameshift deletion	Fat2:NM_001029988:exon18:c.10630delG:p.E3544Rfs*8	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	TCC	9	TCCTCCTCC	-1
M2_p20	chr11	55262757	12A2p6	cell line	sgMsh2	55262757	C	T	SNV	Mutect2;Strelka2	2	0.259	109	0	0	NA	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon18:c.G10628A:p.G3543E	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998767	CCC	nonsynonymous	TCC	9	TCCTCCTCC	NA
M2_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	106	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.999849	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	123	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.73648716	2	0.7784863	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M2_p20	chr11	58047787	12A2p6	cell line	sgMsh2	58047787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	168	0	0	NA	exonic	Larp1	nonsynonymous SNV	Larp1:NM_028451:exon9:c.A1395G:p.I465M	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999977	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	58111285	12A2p6	cell line	sgMsh2	58111285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	130	0	0	NA	exonic	Cnot8	nonsynonymous SNV	"Cnot8:NM_001356477:exon3:c.T143C:p.V48A,Cnot8:NM_001363086:exon3:c.T143C:p.V48A,Cnot8:NM_026949:exon3:c.T143C:p.V48A,Cnot8:NM_001363084:exon4:c.T143C:p.V48A,Cnot8:NM_001363085:exon4:c.T143C:p.V48A"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999702	GTA	nonsynonymous	TGT	9	TGTTGTTGT	NA
M2_p20	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	60	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	2	1	1	0.9966365	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	58581163	12A2p6	cell line	sgMsh2	58581163	C	T	SNV	Mutect2;Vardict	2	0.033	508	0	0	NA	exonic	Olfr325	synonymous SNV	Olfr325:NM_207153:exon1:c.C318T:p.F106F	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.153823268	3	1	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	58651466	12A2p6	cell line	sgMsh2	58651466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	191	0	0	NA	exonic	Trim58	synonymous SNV	Trim58:NM_001039047:exon6:c.A1251G:p.E417E	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	536	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	1.00E-09	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	626	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.484776359	2	3.79E-09	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M2_p20	chr11	59055639	12A2p6	cell line	sgMsh2	59055639	G	A	SNV	Mutect2;Vardict	2	0.041	288	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_199152:exon49:c.C13239T:p.A4413A	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.191113757	3	1	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.135	194	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	0.9999596	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	59134662	12A2p6	cell line	sgMsh2	59134662	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	51	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon2:c.G1141A:p.E381K,Obscn:NM_199152:exon2:c.G1141A:p.E381K"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9938402	TCC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M2_p20	chr11	59749606	12A2p6	cell line	sgMsh2	59749606	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	284	0	0	NA	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_001368931:exon13:c.G1804T:p.A602S,Mprip:NM_012027:exon13:c.G1450T:p.A484S,Mprip:NM_201245:exon13:c.G1450T:p.A484S"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	2.16E-09	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	60497855	12A2p6	cell line	sgMsh2	60497855	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	67	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_182698:exon25:c.C2405A:p.P802H,Myo15:NM_001103171:exon26:c.C5966A:p.P1989H,Myo15:NM_010862:exon27:c.C6020A:p.P2007H"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.997901	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	60718871	12A2p6	cell line	sgMsh2	60718871	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	78	0	0	NA	exonic	Flii	nonsynonymous SNV	"Flii:NM_001302207:exon16:c.C1906A:p.L636I,Flii:NM_022009:exon16:c.C1909A:p.L637I"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.839036005	1	0.9287333	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	153	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.85768125	1	0.988413	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	116	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	132	0	0	NA	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	174	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.208	452	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	65008133	12A2p6	cell line	sgMsh2	65008133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	49	0	0	NA	exonic	Arhgap44	synonymous SNV	"Arhgap44:NM_001099288:exon19:c.G2217A:p.S739S,Arhgap44:NM_175003:exon19:c.G2217A:p.S739S"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.689874049	2	0.5753328	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr11	65008313	12A2p6	cell line	sgMsh2	65008313	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.345	46	0	0	NA	exonic	Arhgap44	frameshift deletion	"Arhgap44:NM_001099288:exon19:c.2037delC:p.Y680Mfs*2,Arhgap44:NM_175003:exon19:c.2037delC:p.Y680Mfs*2"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2_p20	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	122	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999488	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	142	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9998523	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	67101612	12A2p6	cell line	sgMsh2	67101612	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	81	0	0	NA	exonic	Myh3	stopgain	Myh3:NM_001099635:exon40:c.G5743T:p.E1915X	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9991836	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	397	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	153	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999937	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	323	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	1.09E-09	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	67245762	12A2p6	cell line	sgMsh2	67245762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	240	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.C1365A:p.P455P	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.87E-08	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	158	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999955	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	67292689	12A2p6	cell line	sgMsh2	67292689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	278	0	0	NA	exonic	Myh8	nonsynonymous SNV	Myh8:NM_177369:exon20:c.A2225G:p.K742R	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.853019939	1	0.9981521	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	35	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9820643	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr11	68808806	12A2p6	cell line	sgMsh2	68808806	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	199	0	0	NA	exonic	Myh10	nonsynonymous SNV	Myh10:NM_175260:exon35:c.A4967C:p.D1656A	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.797084205	1	0.7543695	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	410	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69103142	12A2p6	cell line	sgMsh2	69103142	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	91	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon11:c.A1273G:p.I425V,Per1:NM_011065:exon11:c.A1273G:p.I425V"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995843	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69476496	12A2p6	cell line	sgMsh2	69476496	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	64	0	0	NA	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon35:c.G5478A:p.T1826T	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9974308	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr11	69562765	12A2p6	cell line	sgMsh2	69562765	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	64	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon7:c.G1000T:p.G334C,Wrap53:NM_001364769:exon8:c.G1000T:p.G334C"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.927600917	1	0.9873824	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69577648	12A2p6	cell line	sgMsh2	69577648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	198	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon3:c.A572C:p.E191A,Wrap53:NM_001364769:exon4:c.A572C:p.E191A"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9999688	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	52	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.195180026	NA	1	1	1	0.9942402	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69734815	12A2p6	cell line	sgMsh2	69734815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	207	0	0	NA	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon29:c.A5508G:p.S1836S	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.503421603	2	0.9998888	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	77	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	2	1	1	0.9989306	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69778090	12A2p6	cell line	sgMsh2	69778090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	39	0	0	NA	exonic	Zbtb4	synonymous SNV	"Zbtb4:NM_001363178:exon4:c.A1638G:p.T546T,Zbtb4:NM_029348:exon4:c.A1638G:p.T546T"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.797084205	1	0.8230958	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr11	69881687	12A2p6	cell line	sgMsh2	69881687	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	102	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon22:c.C2161A:p.L721I	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.932262228	1	0.9978496	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69882436	12A2p6	cell line	sgMsh2	69882436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	208	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon20:c.G2018A:p.G673D	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	69903065	12A2p6	cell line	sgMsh2	69903065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	98	0	0	NA	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001013414:exon2:c.T346C:p.L116L,Neurl4:NM_001291118:exon2:c.T346C:p.L116L,Neurl4:NM_001291119:exon2:c.T346C:p.L116L"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9997409	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	70017427	12A2p6	cell line	sgMsh2	70017427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	131	0	0	NA	exonic	Dlg4	synonymous SNV	Dlg4:NM_001370675:exon2:c.A25C:p.R9R	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999721	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr11	70612360	12A2p6	cell line	sgMsh2	70612360	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.13	66	0	0	NA	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_016713:exon26:c.A3257G:p.H1086R,Mink1:NM_001045959:exon27:c.A3368G:p.H1123R,Mink1:NM_176893:exon27:c.A3281G:p.H1094R,Mink1:NM_001045964:exon28:c.A3389G:p.H1130R"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.605970448	2	0.9467841	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	76	0	0	NA	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.57334127	2	0.9871559	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M2_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	157	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999952	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	65	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9975982	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	72824180	12A2p6	cell line	sgMsh2	72824180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	193	0	0	NA	exonic	Zzef1	synonymous SNV	Zzef1:NM_001045536:exon5:c.T972C:p.S324S	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.811068138	1	0.8880052	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	72980644	12A2p6	cell line	sgMsh2	72980644	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	158	0	0	NA	exonic	Atp2a3	nonsynonymous SNV	"Atp2a3:NM_001163336:exon14:c.A1970C:p.E657A,Atp2a3:NM_001163337:exon14:c.A1970C:p.E657A,Atp2a3:NM_016745:exon14:c.A1970C:p.E657A"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.545373403	2	0.9999778	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	73787842	12A2p6	cell line	sgMsh2	73787842	A	-	Deletion	Mutect2;Vardict	2	0.198	98	0	0	NA	exonic	Olfr390	frameshift deletion	Olfr390:NM_146347:exon1:c.903delA:p.V304Cfs*8	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.922939606	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr11	74054527	12A2p6	cell line	sgMsh2	74054527	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	210	0	0	NA	exonic	Olfr399	synonymous SNV	Olfr399:NM_147004:exon1:c.T231C:p.I77I	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	TAA	synonymous	NA	NA	NA	NA
M2_p20	chr11	74155425	12A2p6	cell line	sgMsh2	74155425	C	T	SNV	Mutect2;Vardict	2	0.031	444	0	0	NA	exonic	Olfr402	synonymous SNV	Olfr402:NM_146708:exon1:c.C270T:p.V90V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.144500645	3	1	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	74657203	12A2p6	cell line	sgMsh2	74657203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	169	0	0	NA	exonic	Cluh	synonymous SNV	"Cluh:NM_001081158:exon3:c.G339A:p.Q113Q,Cluh:NM_001368711:exon4:c.G225A:p.Q75Q"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999979	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	196	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.932262228	1	0.999966	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	75469495	12A2p6	cell line	sgMsh2	75469495	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	120	0	0	NA	exonic	Tlcd2	synonymous SNV	"Tlcd2:NM_001291156:exon4:c.T363G:p.A121A,Tlcd2:NM_027249:exon4:c.T363G:p.A121A"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999414	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	75496165	12A2p6	cell line	sgMsh2	75496165	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	171	0	0	NA	exonic	Prpf8	nonsynonymous SNV	Prpf8:NM_138659:exon21:c.T3435A:p.H1145Q	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.755132405	2	0.7832768	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	290	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.978875339	1	6.03E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	80	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9991266	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	30	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9750382	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	104	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9998272	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	65	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9975982	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	77476630	12A2p6	cell line	sgMsh2	77476630	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	93	0	0	NA	exonic	Ankrd13b	frameshift deletion	"Ankrd13b:NM_001373882:exon5:c.537delG:p.N180Ifs*51,Ankrd13b:NM_001373883:exon5:c.537delG:p.N180Ifs*51,Ankrd13b:NM_172945:exon5:c.537delG:p.N180Ifs*51"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr11	77722639	12A2p6	cell line	sgMsh2	77722639	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	165	0	0	NA	exonic	Cryba1	nonsynonymous SNV	"Cryba1:NM_001313933:exon3:c.A185T:p.N62I,Cryba1:NM_009965:exon3:c.A185T:p.N62I"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.85768125	1	0.9906815	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	78023494	12A2p6	cell line	sgMsh2	78023494	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	64	0	0	NA	exonic	Phf12	synonymous SNV	Phf12:NM_174852:exon9:c.A1761G:p.P587P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.540712092	2	0.9752484	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	65	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	2	1	1	0.9975982	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	117	0	0	NA	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999282	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	78328780	12A2p6	cell line	sgMsh2	78328780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	55	0	0	NA	exonic	Pigs	nonsynonymous SNV	Pigs:NM_201406:exon2:c.T83C:p.I28T	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.85768125	1	0.9338923	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	105	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.73648716	2	0.6970087	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	134	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999772	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	210	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	0.792422894	1	0.6802957	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	82444508	12A2p6	cell line	sgMsh2	82444508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	exonic	Tmem132e	synonymous SNV	Tmem132e:NM_001304439:exon9:c.T2415C:p.A805A	11qC	chr11-69590981-82929860	4	3	1	0.9	4.195180026	NA	1	1	1	0.9970603	CTA	synonymous	CTA	8	CTACTACT	NA
M2_p20	chr11	83589795	12A2p6	cell line	sgMsh2	83589795	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	203	0	0	NA	exonic	Ccl6	nonsynonymous SNV	Ccl6:NM_009139:exon2:c.A86G:p.K29R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.177129823	3	1.00E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	315	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.894971739	1	0.9999897	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	84249479	12A2p6	cell line	sgMsh2	84249479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	182	0	0	NA	exonic	Acaca	nonsynonymous SNV	Acaca:NM_133360:exon13:c.T1778C:p.L593P	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.759793716	2	0.7648948	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	84877678	12A2p6	cell line	sgMsh2	84877678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	219	0	0	NA	exonic	Pigw	nonsynonymous SNV	"Pigw:NM_001077636:exon2:c.T824C:p.L275P,Pigw:NM_001363112:exon2:c.T824C:p.L275P,Pigw:NM_027388:exon2:c.T824C:p.L275P"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.456808492	2	0.9763624	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	312	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.14E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	85022191	12A2p6	cell line	sgMsh2	85022191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	274	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon24:c.A2890G:p.I964V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	9.48E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	292	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.53E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	169	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9670201	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	222	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAA	synonymous	CCT	8	CCTCCTCC	NA
M2_p20	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	107	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.69453536	2	0.919218	CCA	synonymous	NA	NA	NA	NA
M2_p20	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	258	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9999824	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	86661194	12A2p6	cell line	sgMsh2	86661194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	122	0	0	NA	exonic	Vmp1	nonsynonymous SNV	"Vmp1:NM_001356531:exon5:c.T343C:p.Y115H,Vmp1:NM_001379040:exon5:c.T343C:p.Y115H,Vmp1:NM_001379041:exon5:c.T343C:p.Y115H,Vmp1:NM_029478:exon5:c.T343C:p.Y115H"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.918278294	1	0.9983946	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	86661218	12A2p6	cell line	sgMsh2	86661218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	103	0	0	NA	exonic	Vmp1	nonsynonymous SNV	"Vmp1:NM_001356531:exon5:c.G319A:p.E107K,Vmp1:NM_001379040:exon5:c.G319A:p.E107K,Vmp1:NM_001379041:exon5:c.G319A:p.E107K,Vmp1:NM_029478:exon5:c.G319A:p.E107K"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9991015	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	86807520	12A2p6	cell line	sgMsh2	86807520	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.231	19	0	0	NA	exonic	Dhx40	synonymous SNV	Dhx40:NM_026191:exon1:c.G30A:p.R10R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9488776	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	106	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.999849	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	87231375	12A2p6	cell line	sgMsh2	87231375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	261	0	0	NA	exonic	Ppm1e	synonymous SNV	Ppm1e:NM_177167:exon7:c.A1755G:p.P585P	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.195775068	3	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	37	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.984295	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	163	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999968	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	89434655	12A2p6	cell line	sgMsh2	89434655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	126	0	0	NA	exonic	Ankfn1	nonsynonymous SNV	Ankfn1:NM_001327810:exon14:c.A1762G:p.T588A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.848358627	1	0.9719356	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	64	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9974308	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	101	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9997884	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94939404	12A2p6	cell line	sgMsh2	94939404	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	283	0	0	NA	exonic	Col1a1	nonsynonymous SNV	Col1a1:NM_007742:exon6:c.A455G:p.Q152R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.256372113	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94951579	12A2p6	cell line	sgMsh2	94951579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	93	0	0	NA	exonic	Col1a1	nonsynonymous SNV	Col1a1:NM_007742:exon51:c.A4322G:p.Q1441R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9996368	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	106	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.999849	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	94971358	12A2p6	cell line	sgMsh2	94971358	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	32	0	0	NA	exonic	Sgca	nonsynonymous SNV	Sgca:NM_009161:exon6:c.G467A:p.R156H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9781236	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	95286416	12A2p6	cell line	sgMsh2	95286416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	61	0	0	NA	exonic	Kat7	nonsynonymous SNV	"Kat7:NM_177619:exon6:c.A610G:p.T204A,Kat7:NM_001195004:exon7:c.A787G:p.T263A,Kat7:NM_001195003:exon8:c.A877G:p.T293A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9968555	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999928	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	97139476	12A2p6	cell line	sgMsh2	97139476	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	31	0	0	NA	exonic	Tbkbp1	synonymous SNV	"Tbkbp1:NM_001372527:exon8:c.C987T:p.N329N,Tbkbp1:NM_001372528:exon8:c.C987T:p.N329N,Tbkbp1:NM_001372529:exon8:c.C990T:p.N330N,Tbkbp1:NM_001372530:exon8:c.C990T:p.N330N,Tbkbp1:NM_001372531:exon8:c.C990T:p.N330N,Tbkbp1:NM_198100:exon8:c.C987T:p.N329N"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.885649116	1	0.9246468	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	184	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999992	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	222	0	0	NA	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	61	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.09391449	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	98490342	12A2p6	cell line	sgMsh2	98490342	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	165	0	0	NA	exonic	Ikzf3	synonymous SNV	Ikzf3:NM_011771:exon4:c.A411G:p.R137R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.36824358	3	0.9958324	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	167	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	177	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.853019939	1	0.009938092	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr11	99004220	12A2p6	cell line	sgMsh2	99004220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	261	0	0	NA	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon21:c.T2553C:p.G851G	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.843697316	1	0.9943265	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr11	99022840	12A2p6	cell line	sgMsh2	99022840	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	138	0	0	NA	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon2:c.G174A:p.Q58Q	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999826	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr11	99051469	12A2p6	cell line	sgMsh2	99051469	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Igfbp4	nonsynonymous SNV	Igfbp4:NM_010517:exon4:c.C655T:p.R219C	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.997901	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	100516826	12A2p6	cell line	sgMsh2	100516826	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	197	0	0	NA	exonic	Acly	nonsynonymous SNV	"Acly:NM_001199296:exon7:c.T697A:p.W233R,Acly:NM_134037:exon7:c.T697A:p.W233R"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	0.9996996	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	100874941	12A2p6	cell line	sgMsh2	100874941	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	66	0	0	NA	exonic	Stat5a	synonymous SNV	"Stat5a:NM_001164062:exon8:c.G852A:p.E284E,Stat5a:NM_001362680:exon9:c.G852A:p.E284E,Stat5a:NM_011488:exon9:c.G852A:p.E284E"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9977547	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	113	0	0	NA	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999059	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	160	0	0	NA	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999961	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	101188696	12A2p6	cell line	sgMsh2	101188696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	107	0	0	NA	exonic	Cntnap1	synonymous SNV	Cntnap1:NM_016782:exon22:c.T3759C:p.A1253A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.550034714	2	0.9991889	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr11	101524475	12A2p6	cell line	sgMsh2	101524475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	261	0	0	NA	exonic	Brca1	synonymous SNV	Brca1:NM_009764:exon10:c.G2832A:p.G944G	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	5.29E-09	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	102	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.815729449	1	0.8840509	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	29	0	0	NA	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9733402	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	102457243	12A2p6	cell line	sgMsh2	102457243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	47	0	0	NA	exonic	Itga2b	nonsynonymous SNV	Itga2b:NM_010575:exon25:c.A2531G:p.Y844C	11qD	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9919449	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	69	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.9962157	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	92	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9996115	CCC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	97	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997228	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	91	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995843	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	103863242	12A2p6	cell line	sgMsh2	103863242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	177	0	0	NA	exonic	Nsf	synonymous SNV	Nsf:NM_008740:exon13:c.A1467G:p.K489K	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.999994	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	103928745	12A2p6	cell line	sgMsh2	103928745	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	246	0	0	NA	exonic	Nsf	nonsynonymous SNV	Nsf:NM_008740:exon3:c.A197C:p.Q66P	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.28E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	136	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999801	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	271	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	3.18E-09	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	95	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996827	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	53	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9946143	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M2_p20	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	98	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997409	ATA	synonymous	ATAA	8	ATAAATAA	NA
M2_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	152	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.783100271	1	0.62467	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	110148803	12A2p6	cell line	sgMsh2	110148803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	255	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon10:c.T1383C:p.D461D	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.999987	GAT	synonymous	NA	NA	NA	NA
M2_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.237	354	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	82	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	0.9991814	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	114864258	12A2p6	cell line	sgMsh2	114864258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	80	0	0	NA	exonic	Gprc5c	nonsynonymous SNV	"Gprc5c:NM_001110337:exon2:c.A760G:p.I254V,Gprc5c:NM_001110338:exon2:c.A760G:p.I254V,Gprc5c:NM_147217:exon2:c.A760G:p.I254V"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9905621	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	460	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	114987446	12A2p6	cell line	sgMsh2	114987446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	458	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.T239C:p.V80A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	114	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999121	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	31	0	0	NA	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9766306	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	132	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999639	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	65	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9975982	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	221	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	102	0	0	NA	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998022	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	89	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.927600917	1	0.995605	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	17	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9418551	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996368	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	118485145	12A2p6	cell line	sgMsh2	118485145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	72	0	0	NA	exonic	Engase	nonsynonymous SNV	"Engase:NM_001359368:exon10:c.T976C:p.Y326H,Engase:NM_172573:exon10:c.T1249C:p.Y417H"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985017	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	27	0	0	NA	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9696004	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	119236268	12A2p6	cell line	sgMsh2	119236268	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	43	0	0	NA	exonic	Ccdc40	synonymous SNV	Ccdc40:NM_001364767:exon6:c.C1185T:p.G395G	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9894727	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr11	119743894	12A2p6	cell line	sgMsh2	119743894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	394	0	0	NA	exonic	Rptor	nonsynonymous SNV	Rptor:NM_028898:exon5:c.A535G:p.I179V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.647922248	2	3.79E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	228	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.936923539	1	0.9999943	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	225	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	118	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999329	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	73	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985994	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	81	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	1	0.9991836	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	120817145	12A2p6	cell line	sgMsh2	120817145	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	165	0	0	NA	exonic	Fasn	nonsynonymous SNV	Fasn:NM_007988:exon13:c.T2080A:p.L694M	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999928	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	121160505	12A2p6	cell line	sgMsh2	121160505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	143	0	0	NA	exonic	Uts2r	nonsynonymous SNV	Uts2r:NM_145440:exon1:c.T194C:p.V65A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	0.9999114	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	153	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999153	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	121226793	12A2p6	cell line	sgMsh2	121226793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	125	0	0	NA	exonic	Cybc1	synonymous SNV	"Cybc1:NM_001252548:exon4:c.T177C:p.A59A,Cybc1:NM_001252549:exon4:c.T177C:p.A59A,Cybc1:NM_001254735:exon4:c.T312C:p.A104A,Cybc1:NM_144832:exon4:c.T177C:p.A59A"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.759793716	2	0.5736968	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr11	121290862	12A2p6	cell line	sgMsh2	121290862	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	256	0	0	NA	exonic	Foxk2	nonsynonymous SNV	"Foxk2:NM_001080932:exon4:c.A854G:p.Y285C,Foxk2:NM_001363033:exon4:c.A854G:p.Y285C"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.522066848	2	0.9999991	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	121328398	12A2p6	cell line	sgMsh2	121328398	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	236	0	0	NA	exonic	Wdr45b	nonsynonymous SNV	Wdr45b:NM_025793:exon10:c.T995C:p.V332A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	0.9999166	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr11	121341136	12A2p6	cell line	sgMsh2	121341136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	268	0	0	NA	exonic	Wdr45b	frameshift deletion	Wdr45b:NM_025793:exon3:c.222delA:p.K74Nfs*8	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2_p20	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	110	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M2_p20	chr12	3906864	12A2p6	cell line	sgMsh2	3906864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	102	0	0	NA	exonic	Dnmt3a	nonsynonymous SNV	"Dnmt3a:NM_153743:exon17:c.T1909C:p.W637R,Dnmt3a:NM_001271753:exon22:c.T2566C:p.W856R,Dnmt3a:NM_007872:exon22:c.T2566C:p.W856R"	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.904294361	1	0.9942562	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	110	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.969552717	1	0.9996334	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	4770156	12A2p6	cell line	sgMsh2	4770156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	82	0	0	NA	exonic	Pfn4	nonsynonymous SNV	"Pfn4:NM_028376:exon1:c.A4G:p.S2G,Pfn4:NM_001361147:exon2:c.A4G:p.S2G"	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9992369	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	215	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.28433998	3	2.17E-08	GTT	synonymous	TTA	8	TTATTATT	NA
M2_p20	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	155	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999945	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	7991431	12A2p6	cell line	sgMsh2	7991431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	114	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon15:c.A2149G:p.K717E	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.69453536	2	0.936913	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	137	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999814	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M2_p20	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999876	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	53	0	0	NA	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2_p20	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	207	0	0	NA	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr12	9579770	12A2p6	cell line	sgMsh2	9579770	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	105	0	0	NA	exonic	Osr1	synonymous SNV	Osr1:NM_011859:exon2:c.G642A:p.R214R	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9998385	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr12	11458657	12A2p6	cell line	sgMsh2	11458657	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.22	131	0	0	NA	exonic	Rad51ap2	frameshift insertion	Rad51ap2:NM_001111118:exon1:c.2580dupT:p.L862Ffs*3	12qA1.1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	CCT	frameshift	T	5	TTTTT	1
M2_p20	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	200	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.960230095	1	0.9999959	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	31617152	12A2p6	cell line	sgMsh2	31617152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	178	0	0	NA	exonic	Bcap29	nonsynonymous SNV	"Bcap29:NM_007530:exon5:c.A509G:p.H170R,Bcap29:NM_001164090:exon6:c.A509G:p.H170R"	12qA2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.591986515	2	0.9999892	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	410	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	255	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.316969157	3	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	34433149	12A2p6	cell line	sgMsh2	34433149	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	202	0	0	NA	exonic	Hdac9	nonsynonymous SNV	"Hdac9:NM_024124:exon4:c.A338C:p.Q113P,Hdac9:NM_001271386:exon6:c.A410C:p.Q137P"	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	235	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.745809782	2	0.95837	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	40217464	12A2p6	cell line	sgMsh2	40217464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	68	0	0	NA	exonic	Ifrd1	nonsynonymous SNV	Ifrd1:NM_013562:exon2:c.T107C:p.V36A	12qB1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.792422894	1	8.78E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	211	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	44283085	12A2p6	cell line	sgMsh2	44283085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	166	0	0	NA	exonic	Pnpla8	nonsynonymous SNV	Pnpla8:NM_026164:exon2:c.A419G:p.K140R	12qB2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999974	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	189	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.839036005	1	0.9799385	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	44902971	12A2p6	cell line	sgMsh2	44902971	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	154	0	0	NA	exonic	Stxbp6	synonymous SNV	Stxbp6:NM_144552:exon3:c.A174C:p.T58T	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.512744225	2	0.9995645	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr12	46700672	12A2p6	cell line	sgMsh2	46700672	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	118	0	0	NA	exonic	Nova1	frameshift deletion	"Nova1:NM_001364634:exon4:c.749delA:p.N250Tfs*15,Nova1:NM_001364635:exon4:c.746delA:p.N249Tfs*15,Nova1:NM_001364638:exon5:c.383delA:p.N128Tfs*15,Nova1:NM_021361:exon5:c.821delA:p.N274Tfs*15,Nova1:NM_001364636:exon6:c.455delA:p.N152Tfs*15,Nova1:NM_001364637:exon7:c.455delA:p.N152Tfs*15"	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.829713383	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	212	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	CTG	synonymous	ACCT	8	ACCTACCT	NA
M2_p20	chr12	49385059	12A2p6	cell line	sgMsh2	49385059	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	127	0	0	NA	exonic	Foxg1	nonsynonymous SNV	"Foxg1:NM_001160112:exon1:c.A574C:p.K192Q,Foxg1:NM_008241:exon2:c.A574C:p.K192Q"	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.908955672	1	0.9980147	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	179	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.405534069	3	0.8950687	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	79	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.843697316	1	0.9374139	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	205	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M2_p20	chr12	55565519	12A2p6	cell line	sgMsh2	55565519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	452	0	0	NA	exonic	Aldoart2	synonymous SNV	Aldoart2:NM_001277340:exon1:c.T228C:p.G76G	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.997520584	1	1.00E-09	GTG	synonymous	G	5	GGGGG	NA
M2_p20	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	232	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.867003872	1	0.998699	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	55770812	12A2p6	cell line	sgMsh2	55770812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	113	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001112714:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001286263:exon10:c.C1058T:p.T353I,Ralgapa1:NM_001368814:exon10:c.C1058T:p.T353I,Ralgapa1:NM_019994:exon10:c.C1058T:p.T353I"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999059	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	68	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr12	61840019	12A2p6	cell line	sgMsh2	61840020	AC	GA	DBS	Mutect2;Vardict	2	0.159	149	0	0	NA	exonic	Lrfn5	nonframeshift substitution	"Lrfn5:NM_001310586:exon3:c.592_593GA:p.T198D,Lrfn5:NM_178714:exon3:c.592_593GA:p.T198D"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.741148471	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	61840099	12A2p6	cell line	sgMsh2	61840099	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.107	170	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.C672T:p.T224T,Lrfn5:NM_178714:exon3:c.C672T:p.T224T"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.498760292	2	0.9991907	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr12	61840380	12A2p6	cell line	sgMsh2	61840380	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	127	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon3:c.T953G:p.I318S,Lrfn5:NM_178714:exon3:c.T953G:p.I318S"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.503421603	2	0.9969667	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	64957384	12A2p6	cell line	sgMsh2	64957384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	231	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.A354G:p.K118K	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	3.35E-08	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	246	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.466131114	2	0.9956473	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr12	64967163	12A2p6	cell line	sgMsh2	64967163	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	314	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.G1187T:p.S396I,Togaram1:NM_177805:exon1:c.G1187T:p.S396I"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.302985224	3	1.14E-09	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	352	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.01E-09	CAA	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	145	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2_p20	chr12	65099271	12A2p6	cell line	sgMsh2	65099271	-	A	Insertion	Strelka2;Vardict	2	0.2018	114	0	0	NA	exonic	Fancm	frameshift insertion	Fancm:NM_178912:exon11:c.1768dupA:p.N592Kfs*3	12qC1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.940652588	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
M2_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	178	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999988	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	183	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.438163247	2	0.7746661	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	386	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr12	69340984	12A2p6	cell line	sgMsh2	69340984	T	-	Deletion	Strelka2;Vardict	2	0.3553	76	0	0	NA	exonic	Nemf	frameshift deletion	Nemf:NM_025441:exon14:c.1325delA:p.K442Sfs*17	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M2_p20	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	106	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.536050781	2	0.9987414	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr12	70163398	12A2p6	cell line	sgMsh2	70163398	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	146	0	0	NA	exonic	Abhd12b	frameshift deletion	Abhd12b:NM_001195033:exon4:c.347delG:p.G117Efs*30	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2_p20	chr12	70883726	12A2p6	cell line	sgMsh2	70883726	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	160	0	0	NA	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon7:c.C619A:p.Q207K	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999961	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	70890071	12A2p6	cell line	sgMsh2	70890071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	90	0	0	NA	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon10:c.T989C:p.V330A	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.699196671	2	0.8375368	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	288	0	0	NA	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.69E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	229	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	3.82E-08	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr12	71189409	12A2p6	cell line	sgMsh2	71189409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	308	0	0	NA	exonic	2700049A03Rik	nonsynonymous SNV	"2700049A03Rik:NM_001163378:exon24:c.T3533C:p.V1178A,2700049A03Rik:NM_029818:exon24:c.T3533C:p.V1178A"	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.18E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	71194390	12A2p6	cell line	sgMsh2	71194390	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	142	0	0	NA	exonic	2700049A03Rik	synonymous SNV	"2700049A03Rik:NM_001163378:exon27:c.G4071A:p.P1357P,2700049A03Rik:NM_029818:exon27:c.G4071A:p.P1357P"	12qC2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999867	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	264	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.186452446	3	1	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M2_p20	chr12	73350570	12A2p6	cell line	sgMsh2	73350570	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	394	0	0	NA	exonic	Slc38a6	nonsynonymous SNV	Slc38a6:NM_001037717:exon13:c.A985T:p.I329F	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.755132405	2	0.9939266	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	244	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.876326494	1	0.9995421	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	75462326	12A2p6	cell line	sgMsh2	75462326	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	277	0	0	NA	exonic	Ppp2r5e	nonsynonymous SNV	Ppp2r5e:NM_012024:exon12:c.G1178T:p.R393M	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.344937024	3	0.9999983	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	223	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	463	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	76031322	12A2p6	cell line	sgMsh2	76031322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	73	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon75:c.T14027C:p.V4676A	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9985994	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	150	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999923	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	146	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.94158485	1	0.9998069	CTC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	126	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.834374694	1	0.9495857	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr12	80404565	12A2p6	cell line	sgMsh2	80404565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	182	0	0	NA	exonic	Dcaf5	synonymous SNV	"Dcaf5:NM_001364324:exon2:c.A102G:p.V34V,Dcaf5:NM_177267:exon2:c.A348G:p.V116V"	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.89963305	1	0.9995085	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr12	80644882	12A2p6	cell line	sgMsh2	80644882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	278	0	0	NA	exonic	Slc39a9	nonsynonymous SNV	Slc39a9:NM_026244:exon1:c.T2C:p.M1T	12qC3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	2.36E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	81170258	12A2p6	cell line	sgMsh2	81170258	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	84	0	0	NA	exonic	Smoc1	nonsynonymous SNV	"Smoc1:NM_001146217:exon10:c.C1043A:p.A348D,Smoc1:NM_022316:exon10:c.C1010A:p.A337D"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9993332	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	307	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.19E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	274	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.261033424	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	81581904	12A2p6	cell line	sgMsh2	81581904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	134	0	0	NA	exonic	Med6	synonymous SNV	"Med6:NM_001347384:exon5:c.T363C:p.T121T,Med6:NM_001347385:exon5:c.T363C:p.T121T,Med6:NM_001347386:exon6:c.T210C:p.T70T"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.494098981	2	0.9953552	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	157	0	0	NA	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.298323913	3	0.9999899	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	301	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.29E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	83803958	12A2p6	cell line	sgMsh2	83803958	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	109	0	0	NA	exonic	Numb	synonymous SNV	"Numb:NM_001272055:exon5:c.C444T:p.G148G,Numb:NM_001136075:exon6:c.C477T:p.G159G,Numb:NM_010949:exon6:c.C477T:p.G159G,Numb:NM_001272056:exon7:c.C444T:p.G148G"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.894971739	1	0.9935925	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr12	84041861	12A2p6	cell line	sgMsh2	84041861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	74	0	0	NA	exonic	Acot4	nonsynonymous SNV	Acot4:NM_134247:exon2:c.T482A:p.I161N	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9986907	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	187	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.992859273	1	0.999999	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	84173158	12A2p6	cell line	sgMsh2	84173158	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	91	0	0	NA	exonic	Mideas	nonsynonymous SNV	"Mideas:NM_001163501:exon2:c.T1021G:p.S341A,Mideas:NM_001163502:exon2:c.T1021G:p.S341A"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.414856691	3	0.5819139	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	84926253	12A2p6	cell line	sgMsh2	84926253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	181	0	0	NA	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon13:c.G1769A:p.G590E,Arel1:NM_001364189:exon14:c.G1769A:p.G590E,Arel1:NM_178065:exon14:c.G1769A:p.G590E"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.932262228	1	0.999934	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	84970964	12A2p6	cell line	sgMsh2	84970964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	169	0	0	NA	exonic	Fcf1	nonsynonymous SNV	Fcf1:NM_028632:exon1:c.T2C:p.M1T	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999979	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	288	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.69E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	71	0	0	NA	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.894971739	1	0.9793022	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	77	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.601309137	2	0.977207	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	84	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9993332	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	88459023	12A2p6	cell line	sgMsh2	88459023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	0	0	NA	exonic	Adck1	nonsynonymous SNV	"Adck1:NM_001361599:exon8:c.G857A:p.R286H,Adck1:NM_001361601:exon8:c.G683A:p.R228H,Adck1:NM_001361598:exon9:c.G1046A:p.R349H,Adck1:NM_001277296:exon10:c.G1220A:p.R407H,Adck1:NM_001277297:exon10:c.G1220A:p.R407H,Adck1:NM_001361600:exon10:c.G842A:p.R281H,Adck1:NM_028105:exon10:c.G1220A:p.R407H"	12qD3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.783100271	1	0.6453334	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	90332204	12A2p6	cell line	sgMsh2	90332204	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	97	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_001252074:exon7:c.G1498C:p.A500P,Nrxn3:NM_001198587:exon20:c.G4510C:p.A1504P,Nrxn3:NM_172544:exon20:c.G3097C:p.A1033P"	12qD3	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.452147181	2	0.8447622	GGC	nonsynonymous	GCT	8	GCTGCTGC	NA
M2_p20	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	300	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.31E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	167	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999975	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	236	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	2.42E-08	TGA	synonymous	NA	NA	NA	NA
M2_p20	chr12	100129431	12A2p6	cell line	sgMsh2	100129431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	149	0	0	NA	exonic	Nrde2	nonsynonymous SNV	"Nrde2:NM_001377383:exon11:c.T3026C:p.V1009A,Nrde2:NM_001290303:exon12:c.T3185C:p.V1062A,Nrde2:NM_183155:exon12:c.T3170C:p.V1057A"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.536050781	2	0.9999206	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	100143777	12A2p6	cell line	sgMsh2	100143777	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.136	165	0	0	NA	exonic	Nrde2	nonsynonymous SNV	"Nrde2:NM_001377383:exon4:c.T835C:p.W279R,Nrde2:NM_001290303:exon5:c.T994C:p.W332R,Nrde2:NM_183155:exon5:c.T979C:p.W327R"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.633938315	2	0.9996948	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	68	0	0	NA	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.703857982	2	9.14E-06	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	83	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	2	1	1	0.9992867	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	104	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9998272	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.258	323	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M2_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Vardict	2	0.151	84	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.703857982	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M2_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	142	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999867	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	66	0	0	NA	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.647922248	2	0.8737238	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	102808016	12A2p6	cell line	sgMsh2	102808016	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	130	0	0	NA	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon6:c.G1492T:p.G498C,Btbd7:NM_172806:exon7:c.G1492T:p.G498C"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.363582269	3	0.9895105	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	145	0	0	NA	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.922939606	1	0.9994847	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr12	103558388	12A2p6	cell line	sgMsh2	103558388	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	110	0	0	NA	exonic	Ppp4r4	nonsynonymous SNV	Ppp4r4:NM_028980:exon3:c.G218A:p.G73E	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.717841915	2	0.8402029	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	103669079	12A2p6	cell line	sgMsh2	103669079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	46	0	0	NA	exonic	Serpina16	stopgain	Serpina16:NM_001310472:exon6:c.G1075T:p.E359X	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9913869	TCA	nonsynonymous	CTCA	9	CTCACTCAC	NA
M2_p20	chr12	103950807	12A2p6	cell line	sgMsh2	103950807	A	G	SNV	Mutect2;Vardict	2	0.041	367	0	0	NA	exonic	Serpina1e	nonsynonymous SNV	Serpina1e:NM_009247:exon2:c.T602C:p.V201A	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.191113757	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	104032507	12A2p6	cell line	sgMsh2	104032507	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	95	0	0	NA	exonic	Serpina12	nonsynonymous SNV	Serpina12:NM_026535:exon4:c.C971A:p.S324Y	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9996827	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	104130914	12A2p6	cell line	sgMsh2	104130914	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.229	218	0	0	NA	exonic	Serpina3b	frameshift insertion	Serpina3b:NM_173024:exon2:c.454dupA:p.E153Gfs*9	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	TCA	frameshift	NA	NA	NA	1
M2_p20	chr12	104266521	12A2p6	cell line	sgMsh2	104266521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	443	0	0	NA	exonic	Serpina3i	nonsynonymous SNV	Serpina3i:NM_001199940:exon4:c.G684T:p.K228N	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.258	114	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M2_p20	chr12	105713544	12A2p6	cell line	sgMsh2	105713544	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	214	0	0	NA	exonic	Ak7	synonymous SNV	Ak7:NM_030187:exon3:c.C336T:p.C112C	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	GCG	synonymous	NA	NA	NA	NA
M2_p20	chr12	105716017	12A2p6	cell line	sgMsh2	105716017	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.193	251	0	0	NA	exonic	Ak7	stopgain	Ak7:NM_030187:exon4:c.C436T:p.R146X	12qE	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.89963305	1	0.999949	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	133	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.955568784	1	0.9998121	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	108898388	12A2p6	cell line	sgMsh2	108898388	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	35	0	0	NA	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.G458A:p.S153N	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9820643	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	109033003	12A2p6	cell line	sgMsh2	109033003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	30	0	0	NA	exonic	Begain	nonsynonymous SNV	"Begain:NM_001163175:exon7:c.A1841G:p.Y614C,Begain:NM_001374201:exon7:c.A1835G:p.Y612C,Begain:NM_001374202:exon7:c.A1823G:p.Y608C,Begain:NM_001374203:exon7:c.A1784G:p.Y595C,Begain:NM_001374200:exon8:c.A1931G:p.Y644C"	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9750382	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	111302157	12A2p6	cell line	sgMsh2	111302157	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	96	0	0	NA	exonic	Cdc42bpb	frameshift deletion	Cdc42bpb:NM_183016:exon28:c.3608delA:p.K1203Rfs*4	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr12	111411810	12A2p6	cell line	sgMsh2	111411810	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	66	0	0	NA	exonic	Lbhd2	nonsynonymous SNV	"Lbhd2:NM_001101503:exon4:c.G310A:p.V104I,Lbhd2:NM_001358956:exon4:c.G310A:p.V104I"	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9977547	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	113	0	0	NA	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999059	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	56	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9955978	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	75	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9987762	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	112605379	12A2p6	cell line	sgMsh2	112605379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	32	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon9:c.A1841G:p.N614S,Inf2:NM_198411:exon9:c.A1841G:p.N614S"	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	2	1	1	0.9781236	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	112920454	12A2p6	cell line	sgMsh2	112920454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	68	0	0	NA	exonic	Jag2	synonymous SNV	Jag2:NM_010588:exon4:c.C504T:p.H168H	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	2	1	1	0.9980378	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	300	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.279678668	3	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	201	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.85768125	1	0.9951646	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	298	0	0	NA	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.354259647	3	0.9999971	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	156	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999948	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M2_p20	chr12	116450409	12A2p6	cell line	sgMsh2	116450409	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	442	0	0	NA	exonic	Ncapg2	synonymous SNV	Ncapg2:NM_133762:exon27:c.T3198A:p.T1066T	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.554696026	2	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr12	117253656	12A2p6	cell line	sgMsh2	117253656	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	181	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon20:c.G2795T:p.S932I	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.999999	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	89	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9995242	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	136	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999801	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	118023849	12A2p6	cell line	sgMsh2	118023849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	97	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon45:c.G7317T:p.K2439N	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9997228	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	118045533	12A2p6	cell line	sgMsh2	118045533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	162	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon38:c.G6393T:p.E2131D	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999966	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	118142812	12A2p6	cell line	sgMsh2	118142812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	451	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon10:c.T1774C:p.Y592H	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.960230095	1	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	106	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	1	1	0.999849	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	226	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3873436-119465464	4	3	1	0.9	4.195180026	NA	1	0.330953091	3	0.9999965	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	14003662	12A2p6	cell line	sgMsh2	14003662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	267	0	0	NA	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon13:c.A1142G:p.D381G	13qA1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.825052072	1	0.9714349	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	345	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	19367757	12A2p6	cell line	sgMsh2	19367757	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.186	112	0	0	NA	exonic	Stard3nl	synonymous SNV	"Stard3nl:NM_001347485:exon7:c.T636C:p.P212P,Stard3nl:NM_024270:exon7:c.T636C:p.P212P"	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.867003872	1	0.9829573	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr13	21133138	12A2p6	cell line	sgMsh2	21133138	A	G	SNV	Mutect2;Vardict	2	0.036	890	0	0	NA	exonic	Olfr263	nonsynonymous SNV	Olfr263:NM_010984:exon1:c.A362G:p.D121G	13qA2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.167807201	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	21639372	12A2p6	cell line	sgMsh2	21639372	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	278	0	0	NA	exonic	Olfr11	nonsynonymous SNV	Olfr11:NM_146542:exon1:c.T150A:p.H50Q	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	2.36E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	21674653	12A2p6	cell line	sgMsh2	21674653	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	279	0	0	NA	exonic	Olfr1360	nonsynonymous SNV	Olfr1360:NM_146543:exon1:c.G290A:p.C97Y	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	2.27E-09	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22088347	12A2p6	cell line	sgMsh2	22088347	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	372	0	0	NA	exonic	Vmn1r188	nonsynonymous SNV	Vmn1r188:NM_145850:exon1:c.C470T:p.S157L	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.177129823	3	1	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22102380	12A2p6	cell line	sgMsh2	22102380	A	C	SNV	Mutect2;Vardict	2	0.02	407	0	0	NA	exonic	Vmn1r189	nonsynonymous SNV	Vmn1r189:NM_145844:exon1:c.T286G:p.C96G	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.093226223	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	522	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.783100271	2	0.09621386	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	367	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.750471093	2	0.9946613	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	263	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	4.75E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22806259	12A2p6	cell line	sgMsh2	22806259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.597	397	0	0	NA	exonic	Vmn1r209	nonsynonymous SNV	Vmn1r209:NM_001013787:exon1:c.G260A:p.G87E	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	3	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	22852362	12A2p6	cell line	sgMsh2	22852362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	447	0	0	NA	exonic	Vmn1r211	nonsynonymous SNV	Vmn1r211:NM_134243:exon1:c.T134A:p.L45H	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	481	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	3	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	24899697	12A2p6	cell line	sgMsh2	24899697	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	127	0	0	NA	exonic	D130043K22Rik	synonymous SNV	D130043K22Rik:NM_001081051:exon21:c.G3144A:p.T1048T	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9999634	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr13	27606928	12A2p6	cell line	sgMsh2	27606928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	340	0	0	NA	exonic	Prl7b1	nonsynonymous SNV	Prl7b1:NM_029355:exon2:c.T173C:p.I58T	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.605970448	2	1.37E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	27851850	12A2p6	cell line	sgMsh2	27851850	A	T	SNV	Mutect2;Vardict	2	0.043	488	0	0	NA	exonic	Prl2c1	nonsynonymous SNV	"Prl2c1:NM_001045532:exon2:c.A204T:p.E68D,Prl2c1:NM_001361045:exon2:c.A204T:p.E68D"	13qA3.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.200436379	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;MuSe;Vardict	3	0.139	354	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.647922248	2	2.53E-08	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.147	38	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.685212737	1	0.5171327	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	36204588	12A2p6	cell line	sgMsh2	36204588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	235	0	0	NA	exonic	Fars2	nonsynonymous SNV	Fars2:NM_024274:exon2:c.T59C:p.V20A	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.456808492	2	0.9811579	GTC	nonsynonymous	GTCA	8	GTCAGTCA	NA
M2_p20	chr13	36232161	12A2p6	cell line	sgMsh2	36232161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	192	0	0	NA	exonic	Fars2	nonsynonymous SNV	Fars2:NM_024274:exon3:c.T652G:p.F218V	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.508082914	2	0.9998765	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	83	0	0	NA	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9992867	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	40015381	12A2p6	cell line	sgMsh2	40015381	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	237	0	0	NA	exonic	Ofcc1	synonymous SNV	Ofcc1:NM_172143:exon17:c.C2529T:p.H843H	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.587325204	2	0.9999999	TGT	synonymous	NA	NA	NA	NA
M2_p20	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	170	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.834374694	1	0.9673468	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	255	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.988197962	1	1.92E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	45557413	12A2p6	cell line	sgMsh2	45557413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	94	0	0	NA	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon7:c.A2018G:p.K673R,Atxn1:NM_001199305:exon8:c.A2042G:p.K681R,Atxn1:NM_009124:exon8:c.A2018G:p.K673R"	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.904294361	1	0.9924467	CTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	251	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	9.43E-09	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	49621074	12A2p6	cell line	sgMsh2	49621074	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	700	0	0	NA	exonic	Ogn	nonsynonymous SNV	Ogn:NM_008760:exon6:c.A692T:p.N231I	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.400872758	3	0.999993	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	49661272	12A2p6	cell line	sgMsh2	49661272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	486	0	0	NA	exonic	Nol8	synonymous SNV	Nol8:NM_001271397:exon7:c.T855C:p.S285S	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.559357337	2	1	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr13	49705805	12A2p6	cell line	sgMsh2	49705805	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	347	0	0	NA	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon13:c.T1224G:p.I408M	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.582663892	2	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	50245674	12A2p6	cell line	sgMsh2	50245674	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	108	0	0	NA	exonic	Gm906	nonsynonymous SNV	Gm906:NM_001033438:exon4:c.A2615G:p.E872G	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9998681	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	329	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.04E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	109	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.685212737	2	0.9457871	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	50645268	12A2p6	cell line	sgMsh2	50645268	T	G	SNV	Mutect2;MuSe;Vardict	3	0.093	363	0	0	NA	exonic	Gm904	nonsynonymous SNV	Gm904:NM_001033770:exon3:c.T262G:p.C88G	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.433501936	2	0.7178325	ATG	nonsynonymous	A	7	AAAAAAA	NA
M2_p20	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	71	0	0	NA	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.848358627	1	0.9377812	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	0	0	NA	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.932262228	1	0.9969419	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M2_p20	chr13	53468485	12A2p6	cell line	sgMsh2	53468485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	171	0	0	NA	exonic	Msx2	nonsynonymous SNV	Msx2:NM_013601:exon2:c.A488C:p.Q163P	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.578002581	2	0.9999918	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	54104821	12A2p6	cell line	sgMsh2	54104821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	234	0	0	NA	exonic	Sfxn1	nonsynonymous SNV	Sfxn1:NM_027324:exon9:c.C794T:p.A265V	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	2.76E-08	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	84	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2_p20	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	247	0	0	NA	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.862342561	1	0.9985987	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	206	0	0	NA	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.77843896	2	0.5557076	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	55213472	12A2p6	cell line	sgMsh2	55213472	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	214	0	0	NA	exonic	Nsd1	synonymous SNV	Nsd1:NM_008739:exon2:c.T252C:p.N84N	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.321630469	3	0.9999978	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr13	55826341	12A2p6	cell line	sgMsh2	55826341	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	59	0	0	NA	exonic	Pitx1	nonsynonymous SNV	Pitx1:NM_011097:exon3:c.A676G:p.M226V	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.629277004	2	0.8734352	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	56635612	12A2p6	cell line	sgMsh2	56635612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	211	0	0	NA	exonic	Tgfbi	synonymous SNV	Tgfbi:NM_009369:exon13:c.T1725C:p.D575D	13qB1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr13	59718309	12A2p6	cell line	sgMsh2	59718309	A	C	SNV	Mutect2;MuSe;Vardict	3	0.143	93	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3270C:p.K1090N	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.666567493	2	0.9425772	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	350	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	61538449	12A2p6	cell line	sgMsh2	61538449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	361	0	0	NA	exonic	Ctsm	nonsynonymous SNV	"Ctsm:NM_001360721:exon6:c.C719T:p.A240V,Ctsm:NM_022326:exon6:c.C719T:p.A240V"	13qB2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.461469803	2	0.9988257	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	63015288	12A2p6	cell line	sgMsh2	63015288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	378	0	0	NA	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon2:c.G122T:p.G41V,Aopep:NM_001289926:exon2:c.G122T:p.G41V"	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	131	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.946246161	1	0.9996819	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr13	64312589	12A2p6	cell line	sgMsh2	64312589	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.375	10	0	0	NA	exonic	Prxl2c	synonymous SNV	Prxl2c:NM_025370:exon1:c.C96A:p.A32A	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9082715	CGG	synonymous	NA	NA	NA	NA
M2_p20	chr13	64921401	12A2p6	cell line	sgMsh2	64921401	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	314	0	0	NA	exonic	Spata31	synonymous SNV	Spata31:NM_030047:exon3:c.C1362T:p.T454T	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.77843896	2	0.7685796	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr13	65153002	12A2p6	cell line	sgMsh2	65153002	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	242	0	0	NA	exonic	Olfr466	nonsynonymous SNV	Olfr466:NM_146819:exon1:c.G777T:p.Q259H	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.57334127	2	2.54E-09	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Vardict	2	0.157	167	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.731825849	NA	NA	TAG	frameshift	NA	NA	NA	-1
M2_p20	chr13	68584028	12A2p6	cell line	sgMsh2	68584028	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	166	0	0	NA	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.A467T:p.N156I,Fastkd3:NM_027123:exon2:c.A467T:p.N156I"	13qB3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.713180604	2	0.9735711	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	160	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.629277004	2	0.9996833	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	73796782	12A2p6	cell line	sgMsh2	73796782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	452	0	0	NA	exonic	Slc12a7	nonsynonymous SNV	"Slc12a7:NM_001360694:exon11:c.T1412C:p.V471A,Slc12a7:NM_011390:exon11:c.T1412C:p.V471A"	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.717841915	2	0.9999933	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.000999602	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	287	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.74E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	76008176	12A2p6	cell line	sgMsh2	76008176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	317	0	0	NA	exonic	Rfesd	nonsynonymous SNV	"Rfesd:NM_001131068:exon2:c.A110G:p.H37R,Rfesd:NM_001131069:exon2:c.A110G:p.H37R,Rfesd:NM_178916:exon2:c.A110G:p.H37R"	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.661906182	2	0.9999992	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	77044013	12A2p6	cell line	sgMsh2	77044013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	171	0	0	NA	exonic	Slf1	stopgain	Slf1:NM_134071:exon21:c.C2701T:p.Q901X	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.918278294	1	0.9997656	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	77269907	12A2p6	cell line	sgMsh2	77269907	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	217	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon11:c.T2209G:p.L737V	13qC1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.316969157	3	0.999999	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	190	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9999995	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	248	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.13E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	301	0	0	NA	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.73648716	2	0.9957115	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr13	93092756	12A2p6	cell line	sgMsh2	93092756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	270	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.T5823C:p.G1941G	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	3.34E-09	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr13	93184115	12A2p6	cell line	sgMsh2	93184115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	175	0	0	NA	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon4:c.A429G:p.E143E,Tent2:NM_001361537:exon4:c.A429G:p.E143E,Tent2:NM_133905:exon4:c.A429G:p.E143E"	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9999986	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr13	93184292	12A2p6	cell line	sgMsh2	93184292	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	219	0	0	NA	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon4:c.252delT:p.P85Lfs*17,Tent2:NM_001361537:exon4:c.252delT:p.P85Lfs*17,Tent2:NM_133905:exon4:c.252delT:p.P85Lfs*17"	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	98	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9997409	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	291	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.57E-09	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr13	98852932	12A2p6	cell line	sgMsh2	98852932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	218	0	0	NA	exonic	Tnpo1	nonsynonymous SNV	"Tnpo1:NM_001048267:exon19:c.A2237G:p.Y746C,Tnpo1:NM_178716:exon19:c.A2261G:p.Y754C"	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.713180604	2	0.9947781	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	98860720	12A2p6	cell line	sgMsh2	98860720	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	321	0	0	NA	exonic	Tnpo1	synonymous SNV	"Tnpo1:NM_001048267:exon12:c.A1200C:p.P400P,Tnpo1:NM_178716:exon12:c.A1224C:p.P408P"	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.07E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr13	99993608	12A2p6	cell line	sgMsh2	99993608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	0	0	NA	exonic	Mccc2	synonymous SNV	Mccc2:NM_030026:exon3:c.A240G:p.K80K	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	0.9999232	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr13	100058928	12A2p6	cell line	sgMsh2	100058928	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	203	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon19:c.A3782C:p.E1261A	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.540712092	2	0.9999983	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	100060821	12A2p6	cell line	sgMsh2	100060821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	230	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A3055G:p.T1019A	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.85768125	1	0.9971541	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	100188916	12A2p6	cell line	sgMsh2	100188916	T	G	SNV	Mutect2;Vardict	2	0.021	772	0	0	NA	exonic	Naip2	synonymous SNV	"Naip2:NM_001126182:exon3:c.A483C:p.A161A,Naip2:NM_010872:exon3:c.A483C:p.A161A"	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.097887534	3	1	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr13	102804663	12A2p6	cell line	sgMsh2	102804663	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.148	86	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon7:c.T885A:p.N295K	13qD1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.689874049	2	0.8546322	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	106860912	12A2p6	cell line	sgMsh2	106860912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	366	0	0	NA	exonic	Ipo11	nonsynonymous SNV	"Ipo11:NM_001360897:exon22:c.T2038C:p.C680R,Ipo11:NM_029665:exon22:c.T2038C:p.C680R"	13qD2.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.713180604	2	0.9999511	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	106889403	12A2p6	cell line	sgMsh2	106889403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	386	0	0	NA	exonic	Ipo11	nonsynonymous SNV	"Ipo11:NM_001360897:exon12:c.T1178C:p.V393A,Ipo11:NM_029665:exon12:c.T1178C:p.V393A"	13qD2.1	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.405534069	3	0.9948259	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	112355957	12A2p6	cell line	sgMsh2	112355957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	193	0	0	NA	exonic	Ankrd55	nonsynonymous SNV	"Ankrd55:NM_029898:exon7:c.T661C:p.S221P,Ankrd55:NM_001168403:exon8:c.T577C:p.S193P,Ankrd55:NM_001168404:exon8:c.T661C:p.S221P"	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.582663892	2	0.9999981	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	112883194	12A2p6	cell line	sgMsh2	112883194	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	233	0	0	NA	exonic	Mtrex	nonsynonymous SNV	Mtrex:NM_028151:exon21:c.A2381G:p.K794R	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	113210128	12A2p6	cell line	sgMsh2	113210128	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	128	0	0	NA	exonic	Esm1	nonsynonymous SNV	Esm1:NM_023612:exon1:c.T286A:p.F96I	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.666567493	2	0.9886609	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	113617068	12A2p6	cell line	sgMsh2	113617068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	131	0	0	NA	exonic	Snx18	nonsynonymous SNV	Snx18:NM_130796:exon1:c.T1328C:p.F443S	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	1	0.647922248	2	0.9957454	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr13	114826231	12A2p6	cell line	sgMsh2	114826231	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	308	0	0	NA	exonic	Mocs2	nonsynonymous SNV	"Mocs2:NM_001113374:exon5:c.G451A:p.V151M,Mocs2:NM_001113375:exon5:c.G355A:p.V119M"	13qD2.2	chr13-3556297-119495179	6	3	3	0.9	4.195180026	NA	2	1	1	1.18E-09	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	4349939	12A2p6	cell line	sgMsh2	4349939	A	G	SNV	Mutect2;MuSe;Vardict	3	0.081	254	0	0	NA	exonic	2610042L04Rik	nonsynonymous SNV	2610042L04Rik:NM_001309398:exon4:c.A146G:p.N49S	14qA1	chr14-4219009-6676162	3.03871907	2.03871907	1	0.9	4.195180026	NA	1	0.377566202	3	0.9993663	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	7893821	12A2p6	cell line	sgMsh2	7893821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	202	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon14:c.T2133C:p.L711L,Flnb:NM_134080:exon14:c.T2133C:p.L711L"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	0.69453536	2	0.9976381	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr14	7901923	12A2p6	cell line	sgMsh2	7901923	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	131	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon19:c.A2785G:p.I929V,Flnb:NM_134080:exon19:c.A2785G:p.I929V"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	0.340275713	3	0.9982463	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	178	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999988	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr14	7939154	12A2p6	cell line	sgMsh2	7939154	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	62	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon42:c.A6996C:p.E2332D,Flnb:NM_134080:exon42:c.A6963C:p.E2321D"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	0.680551426	2	0.7348288	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	7945865	12A2p6	cell line	sgMsh2	7945865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	84	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon44:c.A7269G:p.G2423G,Flnb:NM_134080:exon44:c.A7236G:p.G2412G"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	70	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9982853	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	12037397	12A2p6	cell line	sgMsh2	12037397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	230	0	0	NA	exonic	Ptprg	synonymous SNV	Ptprg:NM_008981:exon5:c.T576C:p.S192S	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	3.58E-08	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr14	12344519	12A2p6	cell line	sgMsh2	12344519	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	42	0	0	NA	exonic	Fezf2	frameshift deletion	Fezf2:NM_080433:exon2:c.667delC:p.H223Tfs*18	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	TGGG	8	TGGGTGGG	-1
M2_p20	chr14	12344848	12A2p6	cell line	sgMsh2	12344848	-	C	Insertion	Strelka2;Vardict	2	0.2727	11	0	0	NA	exonic	Fezf2	frameshift insertion	Fezf2:NM_080433:exon2:c.337dupG:p.A113Gfs*117	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GGC	frameshift	C	5	CCCCC	1
M2_p20	chr14	12505891	12A2p6	cell line	sgMsh2	12505891	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	144	0	0	NA	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon13:c.C2178A:p.L726L,Cadps:NM_001359921:exon13:c.C2178A:p.L726L,Cadps:NM_012061:exon13:c.C2178A:p.L726L,Cadps:NM_001042617:exon14:c.C2190A:p.L730L,Cadps:NM_001359919:exon14:c.C2190A:p.L730L"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999884	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	135	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999787	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	136	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999801	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	14999180	12A2p6	cell line	sgMsh2	14999180	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	185	0	0	NA	exonic	Nek10	nonsynonymous SNV	Nek10:NM_001195229:exon32:c.A3178C:p.S1060R	14qA2	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	110	0	0	NA	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998848	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr14	16429398	12A2p6	cell line	sgMsh2	16429398	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	116	0	0	NA	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon35:c.A4637G:p.N1546S	14qA2	chr14-7548571-19566630	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	143	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999876	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	20077446	12A2p6	cell line	sgMsh2	20077446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	115	0	0	NA	exonic	Saysd1	nonsynonymous SNV	Saysd1:NM_026209:exon2:c.G409A:p.E137K	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999178	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	20467483	12A2p6	cell line	sgMsh2	20467483	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	134	0	0	NA	exonic	Anxa7	frameshift deletion	Anxa7:NM_001374757:exon6:c.467delC:p.P156Lfs*12	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.927600917	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2_p20	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	143	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.787761583	1	0.6914055	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	21031685	12A2p6	cell line	sgMsh2	21031685	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	86	0	0	NA	exonic	Vcl	synonymous SNV	Vcl:NM_009502:exon21:c.T3153C:p.D1051D	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.41019538	3	0.6255248	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr14	21045582	12A2p6	cell line	sgMsh2	21045582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	145	0	0	NA	exonic	Ap3m1	nonsynonymous SNV	Ap3m1:NM_018829:exon2:c.A179G:p.Y60C	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999892	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	85	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr14	24296104	12A2p6	cell line	sgMsh2	24296104	T	G	SNV	Mutect2;Vardict	2	0.04	195	0	0	NA	exonic	E330034G19Rik	nonsynonymous SNV	"E330034G19Rik:NM_001033214:exon2:c.T277G:p.L93V,E330034G19Rik:NM_001346536:exon2:c.T82G:p.L28V,E330034G19Rik:NM_001379547:exon2:c.T82G:p.L28V"	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.186452446	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	88	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9930013	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	24479845	12A2p6	cell line	sgMsh2	24479845	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	280	0	0	NA	exonic	Polr3a	synonymous SNV	Polr3a:NM_001081247:exon6:c.T676C:p.L226L	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	2.19E-09	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	246	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	1.28E-08	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	27493488	12A2p6	cell line	sgMsh2	27493488	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	87	0	0	NA	exonic	Ccdc66	nonsynonymous SNV	Ccdc66:NM_177111:exon9:c.A1094C:p.D365A	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.73648716	2	8.18E-08	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	27912962	12A2p6	cell line	sgMsh2	27912962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	175	0	0	NA	exonic	Erc2	synonymous SNV	"Erc2:NM_177814:exon6:c.T1455C:p.A485A,Erc2:NM_001347497:exon7:c.T1479C:p.A493A"	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.708519293	2	0.9848258	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	171	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999981	GAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	233	0	0	NA	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999985	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30051702	12A2p6	cell line	sgMsh2	30051702	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	261	0	0	NA	exonic	Cacna1d	nonsynonymous SNV	"Cacna1d:NM_001083616:exon41:c.T5025G:p.N1675K,Cacna1d:NM_028981:exon41:c.T5091G:p.N1697K,Cacna1d:NM_001302637:exon43:c.T5130G:p.N1710K"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.228404246	3	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30119172	12A2p6	cell line	sgMsh2	30119172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	147	0	0	NA	exonic	Cacna1d	nonsynonymous SNV	"Cacna1d:NM_001083616:exon15:c.T2152C:p.Y718H,Cacna1d:NM_028981:exon15:c.T2218C:p.Y740H,Cacna1d:NM_001302637:exon16:c.T2212C:p.Y738H"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.554696026	2	0.999967	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	104	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.880987805	NA	NA	TCC	frameshift	NA	NA	NA	-1
M2_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	121	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999452	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30892280	12A2p6	cell line	sgMsh2	30892280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	159	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon10:c.A1186G:p.T396A,Itih4:NM_001289632:exon10:c.A1186G:p.T396A,Itih4:NM_001289633:exon10:c.A1186G:p.T396A,Itih4:NM_018746:exon10:c.A1186G:p.T396A"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999958	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	107	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998589	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	106	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.999849	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr14	30935287	12A2p6	cell line	sgMsh2	30935287	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	64	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon12:c.T1590G:p.A530A,Itih1:NM_008406:exon12:c.T1578G:p.A526A"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9974308	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	308	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr14	31014621	12A2p6	cell line	sgMsh2	31014621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	365	0	0	NA	exonic	Gnl3	nonsynonymous SNV	Gnl3:NM_153547:exon9:c.T823A:p.C275S	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	193	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	157	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999952	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	134	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.750471093	2	0.7043575	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	32099549	12A2p6	cell line	sgMsh2	32099549	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	169	0	0	NA	exonic	Oxnad1	nonsynonymous SNV	Oxnad1:NM_145460:exon6:c.A590G:p.H197R	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.251710802	3	4.39E-08	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	142	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.73648716	2	0.8460803	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.787761583	1	0.7487326	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	32937781	12A2p6	cell line	sgMsh2	32937781	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	173	0	0	NA	exonic	Vstm4	synonymous SNV	Vstm4:NM_178791:exon8:c.G879A:p.L293L	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.876326494	1	0.9973436	TGA	synonymous	GAGCTG	12	GAGCTGGAGCTG	NA
M2_p20	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.3333	39	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M2_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	135	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.853019939	1	0.9801292	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	34677000	12A2p6	cell line	sgMsh2	34677000	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	89	0	0	NA	exonic	Wapl	nonsynonymous SNV	"Wapl:NM_001004436:exon2:c.T25C:p.Y9H,Wapl:NM_001301330:exon2:c.T25C:p.Y9H"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.568679959	2	0.9958734	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	157	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	0.9999583	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	103	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998151	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	41132922	12A2p6	cell line	sgMsh2	41132922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	47	0	0	NA	exonic	Sftpa1	synonymous SNV	Sftpa1:NM_023134:exon4:c.T273C:p.P91P	14qB	chr14-19751082-42003368	4	2	2	0.9	4.195180026	NA	1	1	1	0.9919449	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	255	0	0	NA	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	7.43E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	208	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.801745516	1	0.8074941	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr14	46385906	12A2p6	cell line	sgMsh2	46385906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	44	0	0	NA	exonic	Bmp4	nonsynonymous SNV	"Bmp4:NM_001316360:exon2:c.T182C:p.L61P,Bmp4:NM_007554:exon3:c.T182C:p.L61P"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9901535	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	105	0	0	NA	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9998385	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.932262228	1	0.9997628	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.626	45	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	3	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M2_p20	chr14	48661318	12A2p6	cell line	sgMsh2	48661318	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	157	0	0	NA	exonic	Otx2	stopgain	"Otx2:NM_001360226:exon2:c.T254A:p.L85X,Otx2:NM_144841:exon2:c.T230A:p.L77X,Otx2:NM_001286483:exon3:c.T230A:p.L77X,Otx2:NM_001360225:exon3:c.T254A:p.L85X,Otx2:NM_001286481:exon4:c.T254A:p.L85X,Otx2:NM_001286482:exon4:c.T230A:p.L77X"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.545373403	2	0.9999762	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	325	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.908955672	1	0.9999984	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	49173332	12A2p6	cell line	sgMsh2	49173332	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	73	0	0	NA	exonic	Naa30	nonsynonymous SNV	Naa30:NM_027492:exon2:c.A716C:p.E239A	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.666567493	2	0.8633975	GAA	nonsynonymous	TCTG	8	TCTGTCTG	NA
M2_p20	chr14	49304191	12A2p6	cell line	sgMsh2	49304191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	73	0	0	NA	exonic	Slc35f4	nonsynonymous SNV	Slc35f4:NM_029238:exon6:c.G1105A:p.G369R	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9985994	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	49773527	12A2p6	cell line	sgMsh2	49773527	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	139	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon2:c.C722T:p.A241V,Armh4:NM_026142:exon2:c.C722T:p.A241V"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.797084205	1	0.7820907	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	49774030	12A2p6	cell line	sgMsh2	49774030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	257	0	0	NA	exonic	Armh4	synonymous SNV	"Armh4:NM_001358244:exon2:c.C219T:p.D73D,Armh4:NM_026142:exon2:c.C219T:p.D73D"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	6.62E-09	GGT	synonymous	NA	NA	NA	NA
M2_p20	chr14	50083882	12A2p6	cell line	sgMsh2	50083882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	366	0	0	NA	exonic	Olfr726	synonymous SNV	Olfr726:NM_146316:exon1:c.A798G:p.S266S	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr14	50362479	12A2p6	cell line	sgMsh2	50362479	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	95	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.C1921T:p.L641F	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9996827	GCT	nonsynonymous	CTG	8	CTGCTGCT	NA
M2_p20	chr14	50362652	12A2p6	cell line	sgMsh2	50362652	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	231	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.A2094C:p.K698N	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.181791134	3	1.00E-09	AAT	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr14	50393163	12A2p6	cell line	sgMsh2	50393163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	276	0	0	NA	exonic	Olfr736	nonsynonymous SNV	Olfr736:NM_146666:exon1:c.A406G:p.T136A	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.65258356	2	0.9999974	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50393556	12A2p6	cell line	sgMsh2	50393556	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	235	0	0	NA	exonic	Olfr736	stopgain	Olfr736:NM_146666:exon1:c.G799T:p.G267X	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	2.58E-08	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	335	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.03E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	291	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.57E-09	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50515932	12A2p6	cell line	sgMsh2	50515932	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	412	0	0	NA	exonic	Olfr742	nonsynonymous SNV	Olfr742:NM_146430:exon1:c.T727A:p.S243T	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	59	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9964023	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50619179	12A2p6	cell line	sgMsh2	50619179	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.182	26	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A956C:p.K319T	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.848358627	1	0.8840204	AAG	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr14	50853011	12A2p6	cell line	sgMsh2	50853011	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	133	0	0	NA	exonic	Tep1	nonsynonymous SNV	Tep1:NM_009351:exon14:c.T2249C:p.L750P	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.344937024	3	0.9977454	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	107	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9998589	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	56	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9955978	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	71	0	0	NA	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9983971	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	146	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999899	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	52145038	12A2p6	cell line	sgMsh2	52145038	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	67	0	0	NA	exonic	Rpgrip1	nonsynonymous SNV	Rpgrip1:NM_023879:exon15:c.C1660G:p.L554V	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.997901	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	52149571	12A2p6	cell line	sgMsh2	52149571	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.184	60	0	0	NA	exonic	Rpgrip1	synonymous SNV	"Rpgrip1:NM_001168515:exon18:c.T2346C:p.D782D,Rpgrip1:NM_023879:exon18:c.T2958C:p.D986D"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.85768125	1	0.9393357	ATG	synonymous	AGG	95	GAGGAGAAGGAGGAGGAGAAGGAGGAAGAGGAGGAGGAGGACGAGAAGGAAGAGGAGGAAGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAGGA	NA
M2_p20	chr14	52158388	12A2p6	cell line	sgMsh2	52158388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	294	0	0	NA	exonic	Rpgrip1	nonsynonymous SNV	"Rpgrip1:NM_001168515:exon23:c.T3074C:p.V1025A,Rpgrip1:NM_023879:exon23:c.T3686C:p.V1229A"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.703857982	2	0.9998157	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	52173812	12A2p6	cell line	sgMsh2	52173812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	170	0	0	NA	exonic	Supt16	nonsynonymous SNV	Supt16:NM_033618:exon17:c.A2021G:p.K674R	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.999998	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	194	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999996	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M2_p20	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.353	66	0	0	NA	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2_p20	chr14	52235367	12A2p6	cell line	sgMsh2	52235367	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	105	0	0	NA	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon3:c.A978C:p.Q326H	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9998385	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	52372591	12A2p6	cell line	sgMsh2	52372591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.252	250	0	0	NA	exonic	Olfr1512	nonsynonymous SNV	Olfr1512:NM_146432:exon1:c.C461T:p.S154L	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-08	TGA	nonsynonymous	AGCC	9	AGCCAGCCA	NA
M2_p20	chr14	52410268	12A2p6	cell line	sgMsh2	52410268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	291	0	0	NA	exonic	Olfr1510	synonymous SNV	Olfr1510:NM_146431:exon1:c.A603G:p.E201E	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.57E-09	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr14	52490154	12A2p6	cell line	sgMsh2	52490154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	263	0	0	NA	exonic	Olfr1507	nonsynonymous SNV	"Olfr1507:NM_020512:exon1:c.A809G:p.E270G,Olfr1507:NM_001170918:exon2:c.A809G:p.E270G"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	4.75E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	99	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9997578	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	148	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.94158485	1	0.9998243	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54726814	12A2p6	cell line	sgMsh2	54726814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	237	0	0	NA	exonic	Slc7a8	nonsynonymous SNV	Slc7a8:NM_016972:exon9:c.A1181G:p.N394S	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.955568784	1	0.9999992	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54858102	12A2p6	cell line	sgMsh2	54858102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	96	0	0	NA	exonic	Homez	nonsynonymous SNV	"Homez:NM_001177705:exon2:c.T148C:p.F50L,Homez:NM_183174:exon2:c.T148C:p.F50L"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.960230095	1	0.998891	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54897011	12A2p6	cell line	sgMsh2	54897011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	239	0	0	NA	exonic	Pabpn1	nonsynonymous SNV	Pabpn1:NM_019402:exon5:c.A689G:p.E230G	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.764455027	2	0.8425576	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	76	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.998856	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	54953903	12A2p6	cell line	sgMsh2	54953903	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	130	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon21:c.A2480G:p.K827R,Myh6:NM_010856:exon21:c.A2480G:p.K827R"	14qC2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.671228804	2	0.9873086	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55101599	12A2p6	cell line	sgMsh2	55101599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	155	0	0	NA	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon14:c.A857G:p.Q286R,Ap1g2:NM_007455:exon15:c.A1499G:p.Q500R"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999945	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	122	0	0	NA	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999488	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55236120	12A2p6	cell line	sgMsh2	55236120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	73	0	0	NA	exonic	Dhrs2	nonsynonymous SNV	Dhrs2:NM_027790:exon5:c.A235G:p.T79A	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9985994	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	187	0	0	NA	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55621286	12A2p6	cell line	sgMsh2	55621286	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	94	0	0	NA	exonic	Rec8	nonsynonymous SNV	"Rec8:NM_001360389:exon6:c.C190T:p.L64F,Rec8:NM_020002:exon7:c.C517T:p.L173F"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9996605	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55633044	12A2p6	cell line	sgMsh2	55633044	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	0	0	NA	exonic	Ipo4	synonymous SNV	"Ipo4:NM_001360078:exon10:c.C922T:p.L308L,Ipo4:NM_024267:exon10:c.C922T:p.L308L"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9997034	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr14	55640537	12A2p6	cell line	sgMsh2	55640537	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	110	0	0	NA	exonic	Tm9sf1	nonsynonymous SNV	"Tm9sf1:NM_001360063:exon3:c.A1001G:p.N334S,Tm9sf1:NM_028780:exon4:c.A1001G:p.N334S"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.321630469	3	0.9983742	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	44	0	0	NA	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9901535	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	57	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.792422894	1	8.23E-07	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	54	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.755132405	1	8.11E-06	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr14	56019555	12A2p6	cell line	sgMsh2	56019555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	207	0	0	NA	exonic	Mcpt1	synonymous SNV	Mcpt1:NM_008570:exon4:c.C549T:p.N183N	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9999998	ACT	synonymous	NA	NA	NA	NA
M2_p20	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	137	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.974214028	1	0.9999369	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	56500485	12A2p6	cell line	sgMsh2	56500485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	88	0	0	NA	exonic	Rnf17	nonsynonymous SNV	Rnf17:NM_001033043:exon27:c.T3722G:p.L1241R	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.913616983	1	0.9930013	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	213	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	56778140	12A2p6	cell line	sgMsh2	56778140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	81	0	0	NA	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon1:c.T20C:p.L7P	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9991836	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	57450706	12A2p6	cell line	sgMsh2	57450706	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	333	0	0	NA	exonic	Ift88	frameshift deletion	Ift88:NM_009376:exon13:c.1080delA:p.N362Mfs*19	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	310	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.988197962	1	1.55E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	220	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr14	59409230	12A2p6	cell line	sgMsh2	59409230	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	244	0	0	NA	exonic	Gm45935;Setdb2	nonsynonymous SNV	"Setdb2:NM_001320721:exon11:c.G1769T:p.S590I,Setdb2:NM_001320720:exon12:c.G1835T:p.S612I,Gm45935:NM_001320725:exon12:c.G1835T:p.S612I"	14qC3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.65258356	2	0.9999861	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	249	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.06E-08	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M2_p20	chr14	62606644	12A2p6	cell line	sgMsh2	62606644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	0	0	NA	exonic	Fam124a	nonsynonymous SNV	Fam124a:NM_001243857:exon4:c.T1600C:p.F534L	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9998385	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	63492797	12A2p6	cell line	sgMsh2	63492797	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	88	0	0	NA	exonic	Tdh	nonsynonymous SNV	Tdh:NM_021480:exon9:c.G1032T:p.W344C	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.999491	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	65578034	12A2p6	cell line	sgMsh2	65578034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	242	0	0	NA	exonic	Elp3	nonsynonymous SNV	"Elp3:NM_001253812:exon7:c.A565G:p.M189V,Elp3:NM_028811:exon7:c.A508G:p.M170V"	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.65E-08	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	65826534	12A2p6	cell line	sgMsh2	65826534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	265	0	0	NA	exonic	Esco2	synonymous SNV	Esco2:NM_028039:exon7:c.C1200T:p.D400D	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.908955672	1	0.9999863	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	152	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999932	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	107	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.848358627	1	0.9629379	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M2_p20	chr14	66110173	12A2p6	cell line	sgMsh2	66110173	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	0	0	NA	exonic	Ephx2	nonsynonymous SNV	"Ephx2:NM_001271403:exon2:c.G235T:p.A79S,Ephx2:NM_001271421:exon2:c.G91T:p.A31S,Ephx2:NM_001271402:exon3:c.G130T:p.A44S,Ephx2:NM_007940:exon3:c.G289T:p.A97S"	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999488	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	66824373	12A2p6	cell line	sgMsh2	66824373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	88	0	0	NA	exonic	Dpysl2	synonymous SNV	"Dpysl2:NM_001378767:exon8:c.T1086A:p.A362A,Dpysl2:NM_009955:exon8:c.T783A:p.A261A"	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.999491	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	175	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	450	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-09	CGG	synonymous	NA	NA	NA	NA
M2_p20	chr14	68568832	12A2p6	cell line	sgMsh2	68568832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	127	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon12:c.T1193C:p.F398S	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.913616983	1	0.9983815	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	142	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999867	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.243	232	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	3.14E-08	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr14	69793939	12A2p6	cell line	sgMsh2	69793939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	99	0	0	NA	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon7:c.A1736G:p.N579S	14qD2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9997578	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	70638902	12A2p6	cell line	sgMsh2	70638902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	58	0	0	NA	exonic	Fgf17	synonymous SNV	"Fgf17:NM_001360108:exon3:c.G117A:p.R39R,Fgf17:NM_008004:exon3:c.G150A:p.R50R"	14qD2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9961519	GCC	synonymous	NA	NA	NA	NA
M2_p20	chr14	70966311	12A2p6	cell line	sgMsh2	70966311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	63	0	0	NA	exonic	Gfra2	nonsynonymous SNV	"Gfra2:NM_001302095:exon3:c.T500C:p.M167T,Gfra2:NM_001302094:exon4:c.T584C:p.M195T,Gfra2:NM_008115:exon5:c.T899C:p.M300T"	14qD2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.894971739	1	0.9735813	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	106	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.999849	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	245	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.89963305	1	0.9999379	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	216	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	75309767	12A2p6	cell line	sgMsh2	75309767	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	82	0	0	NA	exonic	Zc3h13	synonymous SNV	"Zc3h13:NM_001359875:exon7:c.T711G:p.A237A,Zc3h13:NM_026083:exon7:c.T711G:p.A237A"	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9992369	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr14	75658988	12A2p6	cell line	sgMsh2	75658988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	71	0	0	NA	exonic	Erich6b	nonsynonymous SNV	"Erich6b:NM_001369022:exon2:c.A313G:p.K105E,Erich6b:NM_029230:exon2:c.A313G:p.K105E"	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.680551426	2	0.803022	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	77034020	12A2p6	cell line	sgMsh2	77034020	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	149	0	0	NA	exonic	Lacc1	nonsynonymous SNV	Lacc1:NM_172488:exon4:c.A726T:p.K242N	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999917	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	78514273	12A2p6	cell line	sgMsh2	78514273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	92	0	0	NA	exonic	Akap11	nonsynonymous SNV	"Akap11:NM_001346784:exon6:c.A673T:p.T225S,Akap11:NM_001164503:exon7:c.A673T:p.T225S"	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9996115	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	79020657	12A2p6	cell line	sgMsh2	79020657	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	136	0	0	NA	exonic	Vwa8	nonsynonymous SNV	"Vwa8:NM_027906:exon19:c.C2245T:p.P749S,Vwa8:NM_173758:exon19:c.C2245T:p.P749S"	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.908955672	1	0.9985643	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	79064878	12A2p6	cell line	sgMsh2	79064878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	234	0	0	NA	exonic	Vwa8	nonsynonymous SNV	"Vwa8:NM_027906:exon26:c.A2986G:p.S996G,Vwa8:NM_173758:exon26:c.A2986G:p.S996G"	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	2.76E-08	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	79212753	12A2p6	cell line	sgMsh2	79212753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	507	0	0	NA	exonic	Zfp957	synonymous SNV	Zfp957:NM_001033215:exon3:c.T1605C:p.I535I	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr14	79452530	12A2p6	cell line	sgMsh2	79452530	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	279	0	0	NA	exonic	Kbtbd6	nonsynonymous SNV	Kbtbd6:NM_001034882:exon1:c.G475T:p.A159S	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.927600917	1	0.9999986	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	100	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9997736	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr14	84448513	12A2p6	cell line	sgMsh2	84448513	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	86	0	0	NA	exonic	Pcdh17	frameshift deletion	Pcdh17:NM_001013753:exon1:c.2419delC:p.R808Gfs*3	14qD3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	64	0	0	NA	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.969552717	1	0.9949736	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	157	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999952	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	99089660	12A2p6	cell line	sgMsh2	99089660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	50	0	0	NA	exonic	Dis3	synonymous SNV	"Dis3:NM_001360051:exon8:c.T630C:p.I210I,Dis3:NM_028315:exon8:c.T1197C:p.I399I,Dis3:NM_001360050:exon9:c.T915C:p.I305I"	14qE2.2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.904294361	1	0.9664935	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	75	0	0	NA	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9987762	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	101913334	12A2p6	cell line	sgMsh2	101913334	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	196	0	0	NA	exonic	Lmo7	nonsynonymous SNV	"Lmo7:NM_001347628:exon15:c.C2760A:p.S920R,Lmo7:NM_201529:exon18:c.C3459A:p.S1153R"	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999997	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	375	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	103306245	12A2p6	cell line	sgMsh2	103306245	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	173	0	0	NA	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon4:c.T693C:p.N231N	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.242388179	3	1.22E-08	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr14	103314489	12A2p6	cell line	sgMsh2	103314489	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	91	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon3:c.T404G:p.I135S	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.9995843	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	103820781	12A2p6	cell line	sgMsh2	103820781	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	0	0	NA	exonic	Ednrb	nonsynonymous SNV	"Ednrb:NM_001276296:exon5:c.G1085T:p.S362I,Ednrb:NM_007904:exon5:c.G1085T:p.S362I,Ednrb:NM_001136061:exon6:c.G1085T:p.S362I"	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9997228	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	78	0	0	NA	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.000999602	GCC	synonymous	NA	NA	NA	NA
M2_p20	chr14	105893188	12A2p6	cell line	sgMsh2	105893188	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	103	0	0	NA	exonic	Spry2	nonsynonymous SNV	Spry2:NM_011897:exon2:c.A563C:p.E188A	14qE2.3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.316969157	3	0.9980792	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	163	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999968	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999373	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	110751621	12A2p6	cell line	sgMsh2	110751621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	123	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.A653G:p.N218S	14qE3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999521	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	151	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.950907472	1	0.9999063	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr14	118043190	12A2p6	cell line	sgMsh2	118043190	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.181	46	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.G413A:p.R138K	14qE4	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.843697316	1	9.92E-07	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	205	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	22	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	2	1	1	0.957888	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.205	104	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.955568784	1	0.9991471	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	120022760	12A2p6	cell line	sgMsh2	120022760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	188	0	0	NA	exonic	Oxgr1	nonsynonymous SNV	Oxgr1:NM_001001490:exon4:c.T34C:p.S12P	14qE4	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	0.848358627	1	0.9888223	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	367	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-43673573-123291781	4.06263995	4.06263995	0	0.9	4.195180026	NA	1	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	123295446	12A2p6	cell line	sgMsh2	123295446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon35:c.A3901G:p.M1301V	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	211	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	474	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	279	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	2.27E-09	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M2_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	183	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999992	ATG	synonymous	A	5	AAAAA	NA
M2_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	297	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.223742935	3	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	6844342	12A2p6	cell line	sgMsh2	6844342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	572	0	0	NA	exonic	Osmr	synonymous SNV	"Osmr:NM_001310469:exon5:c.T573C:p.D191D,Osmr:NM_011019:exon5:c.T573C:p.D191D"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr15	7247157	12A2p6	cell line	sgMsh2	7247157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	45	0	0	NA	exonic	Egflam	synonymous SNV	"Egflam:NM_001289496:exon12:c.T1527C:p.P509P,Egflam:NM_001289498:exon12:c.T1077C:p.P359P,Egflam:NM_178748:exon12:c.T1527C:p.P509P"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9907907	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	8093722	12A2p6	cell line	sgMsh2	8093722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	316	0	0	NA	exonic	Wdr70	synonymous SNV	"Wdr70:NM_001081402:exon3:c.C129T:p.F43F,Wdr70:NM_001358788:exon3:c.C129T:p.F43F"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.10E-09	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	157	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999952	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	8325714	12A2p6	cell line	sgMsh2	8325714	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	479	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon25:c.T4962A:p.D1654E,Nipbl:NM_201232:exon25:c.T4962A:p.D1654E"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.41019538	3	0.9953801	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	9704496	12A2p6	cell line	sgMsh2	9704496	A	-	Deletion	Mutect2;Vardict	2	0.071	351	0	0	NA	exonic	Spef2	frameshift deletion	"Spef2:NM_001305044:exon9:c.1230delT:p.F410Lfs*26,Spef2:NM_177123:exon9:c.1230delT:p.F410Lfs*26,Spef2:NM_001305042:exon10:c.1401delT:p.F467Lfs*25"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.330953091	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	158	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999955	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	128	0	0	NA	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999658	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	153	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999937	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	53	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9946143	CTT	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr15	12407261	12A2p6	cell line	sgMsh2	12407261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	191	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon10:c.A1790G:p.K597R	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.41019538	3	0.859541	CTT	nonsynonymous	CACC	8	CACCCACC	NA
M2_p20	chr15	13034621	12A2p6	cell line	sgMsh2	13034621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	exonic	Cdh6	nonsynonymous SNV	Cdh6:NM_007666:exon12:c.A1952G:p.D651G	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9948073	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	25987021	12A2p6	cell line	sgMsh2	25987021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	250	0	0	NA	exonic	Zfp622	nonsynonymous SNV	Zfp622:NM_144523:exon2:c.T858G:p.D286E	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.405534069	3	0.9612883	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	137	0	0	NA	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M2_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	185	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999993	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr15	28367833	12A2p6	cell line	sgMsh2	28367833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	164	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon50:c.T8363C:p.V2788A	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.999997	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	356	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	31027672	12A2p6	cell line	sgMsh2	31027672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	71	0	0	NA	exonic	Ctnnd2	synonymous SNV	"Ctnnd2:NM_001355502:exon22:c.A3666G:p.X1222X,Ctnnd2:NM_008729:exon23:c.A3741G:p.X1247X"	15qB2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9983971	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	50	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9934126	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Vardict	2	0.053	367	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.24704949	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M2_p20	chr15	35300596	12A2p6	cell line	sgMsh2	35300596	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.425	104	0	0	NA	exonic	Osr2	frameshift deletion	"Osr2:NM_001368665:exon2:c.297delG:p.A101Pfs*35,Osr2:NM_054049:exon2:c.297delG:p.A101Pfs*35"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2_p20	chr15	35674927	12A2p6	cell line	sgMsh2	35674927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	260	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon33:c.T5192C:p.L1731S	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	5.59E-09	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	221	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	125	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999582	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M2_p20	chr15	36600921	12A2p6	cell line	sgMsh2	36600921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	255	0	0	NA	exonic	Pabpc1	synonymous SNV	Pabpc1:NM_008774:exon6:c.A825G:p.E275E	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	7.43E-09	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	0	0	NA	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999059	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	39345596	12A2p6	cell line	sgMsh2	39345596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	243	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon3:c.T674C:p.I225T,Rims2:NM_001256383:exon3:c.T674C:p.I225T,Rims2:NM_053271:exon5:c.T794C:p.I265T"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.335614402	3	0.9999975	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	39759453	12A2p6	cell line	sgMsh2	39759453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	225	0	0	NA	exonic	Dcstamp	nonsynonymous SNV	"Dcstamp:NM_001289506:exon3:c.T1166C:p.L389P,Dcstamp:NM_029422:exon3:c.T1169C:p.L390P"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	4.98E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	396	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	47619739	12A2p6	cell line	sgMsh2	47619739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	98	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon61:c.T9859C:p.L3287L	15qB3.3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9997409	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	47711038	12A2p6	cell line	sgMsh2	47711038	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	299	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon39:c.C6171A:p.T2057T	15qB3.3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.200436379	3	1	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr15	50831953	12A2p6	cell line	sgMsh2	50831953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	167	0	0	NA	exonic	Trps1	synonymous SNV	"Trps1:NM_001310481:exon3:c.T945G:p.T315T,Trps1:NM_001310485:exon3:c.T945G:p.T315T,Trps1:NM_032000:exon3:c.T933G:p.T311T"	15qC	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	51881043	12A2p6	cell line	sgMsh2	51881043	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	242	0	0	NA	exonic	Utp23	synonymous SNV	Utp23:NM_030132:exon2:c.G216T:p.L72L	15qC	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.65E-08	TGG	synonymous	NA	NA	NA	NA
M2_p20	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	125	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999582	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	157	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999952	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	57263457	12A2p6	cell line	sgMsh2	57263457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	357	0	0	NA	exonic	Slc22a22	nonsynonymous SNV	"Slc22a22:NM_001357930:exon2:c.T215C:p.M72T,Slc22a22:NM_172378:exon3:c.T215C:p.M72T"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.624615693	2	2.16E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	58943861	12A2p6	cell line	sgMsh2	58943861	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	151	0	0	NA	exonic	Mtss1	nonsynonymous SNV	"Mtss1:NM_001146180:exon14:c.A1807G:p.T603A,Mtss1:NM_144800:exon15:c.A1849G:p.T617A"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.564018648	2	0.9999761	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	59055080	12A2p6	cell line	sgMsh2	59055080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	67	0	0	NA	exonic	Mtss1	nonsynonymous SNV	"Mtss1:NM_001146180:exon3:c.T146C:p.V49A,Mtss1:NM_144800:exon3:c.T146C:p.V49A"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.997901	TAC	nonsynonymous	GCT	9	GCTGCTGCT	NA
M2_p20	chr15	59329807	12A2p6	cell line	sgMsh2	59329807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	374	0	0	NA	exonic	Sqle	synonymous SNV	Sqle:NM_009270:exon10:c.T1506C:p.G502G	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.302985224	3	1.00E-09	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	91	0	0	NA	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9995843	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	61989672	12A2p6	cell line	sgMsh2	61989672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	82	0	0	NA	exonic	Myc	synonymous SNV	"Myc:NM_001177352:exon3:c.T1084C:p.L362L,Myc:NM_001177353:exon3:c.T1126C:p.L376L,Myc:NM_001177354:exon3:c.T1084C:p.L362L,Myc:NM_010849:exon3:c.T1129C:p.L377L"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.787761583	1	7.85E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	541	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	63937370	12A2p6	cell line	sgMsh2	63937370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	475	0	0	NA	exonic	Cyrib	synonymous SNV	"Cyrib:NM_001360035:exon10:c.A768G:p.V256V,Cyrib:NM_001360037:exon10:c.A768G:p.V256V,Cyrib:NM_001360038:exon10:c.A768G:p.V256V,Cyrib:NM_144846:exon10:c.A768G:p.V256V,Cyrib:NM_001360036:exon11:c.A768G:p.V256V"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr15	64094034	12A2p6	cell line	sgMsh2	64094034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	221	0	0	NA	exonic	Asap1	nonsynonymous SNV	"Asap1:NM_001276462:exon26:c.T3152C:p.V1051A,Asap1:NM_001276463:exon26:c.T3116C:p.V1039A,Asap1:NM_001276461:exon27:c.T3041C:p.V1014A,Asap1:NM_001276467:exon28:c.T3050C:p.V1017A,Asap1:NM_010026:exon29:c.T3221C:p.V1074A"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	183	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999992	TGA	synonymous	NA	NA	NA	NA
M2_p20	chr15	66004728	12A2p6	cell line	sgMsh2	66004728	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	300	0	0	NA	exonic	Kcnq3	nonsynonymous SNV	Kcnq3:NM_152923:exon11:c.C1565A:p.A522D	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.344937024	3	0.9999995	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	66615746	12A2p6	cell line	sgMsh2	66615746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	77	0	0	NA	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon12:c.A1478G:p.H493R	15qD2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9989306	CAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M2_p20	chr15	66764446	12A2p6	cell line	sgMsh2	66764446	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	190	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon38:c.G6738T:p.E2246D	15qD2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	126	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999609	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	72590679	12A2p6	cell line	sgMsh2	72590679	C	T	SNV	Mutect2;Vardict	2	0.033	239	0	0	NA	exonic	Trappc9	synonymous SNV	"Trappc9:NM_029640:exon21:c.G2652A:p.V884V,Trappc9:NM_180662:exon21:c.G3189A:p.V1063V"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.153823268	3	1	GCA	synonymous	NA	NA	NA	NA
M2_p20	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	138	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999826	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	88	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.999491	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	167	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999975	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76120656	12A2p6	cell line	sgMsh2	76120656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	67	0	0	NA	exonic	BC024139	nonsynonymous SNV	BC024139:NM_001142968:exon13:c.G1819A:p.E607K	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.997901	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	216	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	GCG	synonymous	NA	NA	NA	NA
M2_p20	chr15	76174913	12A2p6	cell line	sgMsh2	76174913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	130	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A10976G:p.Q3659R,Plec:NM_201385:exon32:c.A10862G:p.Q3621R,Plec:NM_201386:exon32:c.A10823G:p.Q3608R,Plec:NM_201387:exon32:c.A10418G:p.Q3473R,Plec:NM_201388:exon32:c.A10418G:p.Q3473R,Plec:NM_201389:exon32:c.A11318G:p.Q3773R,Plec:NM_201390:exon32:c.A10793G:p.Q3598R,Plec:NM_201391:exon32:c.A10889G:p.Q3630R,Plec:NM_201392:exon32:c.A10418G:p.Q3473R,Plec:NM_201393:exon32:c.A10910G:p.Q3637R,Plec:NM_201394:exon32:c.A10889G:p.Q3630R,Plec:NM_001163540:exon33:c.A11333G:p.Q3778R,Plec:NM_001163549:exon33:c.A10904G:p.Q3635R,Plec:NM_001163542:exon34:c.A11027G:p.Q3676R,Plec:NM_001164203:exon34:c.A10418G:p.Q3473R"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.554696026	2	0.999874	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	44	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9901535	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr15	76180170	12A2p6	cell line	sgMsh2	76180170	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	73	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A5852C:p.E1951A,Plec:NM_201385:exon31:c.A5738C:p.E1913A,Plec:NM_201386:exon31:c.A5699C:p.E1900A,Plec:NM_201387:exon31:c.A5294C:p.E1765A,Plec:NM_201388:exon31:c.A5294C:p.E1765A,Plec:NM_201389:exon31:c.A6194C:p.E2065A,Plec:NM_201390:exon31:c.A5669C:p.E1890A,Plec:NM_201391:exon31:c.A5765C:p.E1922A,Plec:NM_201392:exon31:c.A5294C:p.E1765A,Plec:NM_201393:exon31:c.A5786C:p.E1929A,Plec:NM_201394:exon31:c.A5765C:p.E1922A,Plec:NM_001163540:exon32:c.A6209C:p.E2070A,Plec:NM_001163549:exon32:c.A5780C:p.E1927A,Plec:NM_001163542:exon33:c.A5903C:p.E1968A,Plec:NM_001164203:exon33:c.A5294C:p.E1765A"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.578002581	2	0.9821665	CTC	nonsynonymous	CTC	10	CTCCTCCTCC	NA
M2_p20	chr15	76353432	12A2p6	cell line	sgMsh2	76353432	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	242	0	0	NA	exonic	Maf1	nonsynonymous SNV	"Maf1:NM_001164608:exon6:c.A592G:p.I198V,Maf1:NM_026859:exon6:c.A592G:p.I198V,Maf1:NM_001164607:exon7:c.A592G:p.I198V"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.279678668	3	2.10E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	121	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M2_p20	chr15	76593462	12A2p6	cell line	sgMsh2	76593462	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	167	0	0	NA	exonic	Adck5	nonsynonymous SNV	Adck5:NM_172960:exon5:c.C374T:p.A125V	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999975	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Vardict	2	0.043	281	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.200436379	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr15	76623460	12A2p6	cell line	sgMsh2	76623460	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	210	0	0	NA	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.T115C:p.Y39H,Vps28:NM_025842:exon6:c.T229C:p.Y77H"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76634808	12A2p6	cell line	sgMsh2	76634808	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	141	0	0	NA	exonic	Tonsl	nonsynonymous SNV	Tonsl:NM_183091:exon12:c.G1524T:p.E508D	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999858	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76638086	12A2p6	cell line	sgMsh2	76638086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	126	0	0	NA	exonic	Tonsl	nonsynonymous SNV	Tonsl:NM_183091:exon6:c.A706G:p.K236E	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999609	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76646203	12A2p6	cell line	sgMsh2	76646203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	53	0	0	NA	exonic	Cyhr1	synonymous SNV	"Cyhr1:NM_001357882:exon4:c.C1180T:p.L394L,Cyhr1:NM_019396:exon5:c.C916T:p.L306L"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9946143	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	100	0	0	NA	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9997736	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr15	76704646	12A2p6	cell line	sgMsh2	76704646	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.09	100	0	0	NA	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon19:c.G3093T:p.Q1031H	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.419518003	3	0.5372675	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	143	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999876	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	310	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.16E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	89	0	0	NA	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.9983848	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	149	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999917	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	78525319	12A2p6	cell line	sgMsh2	78525319	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	123	0	0	NA	exonic	C1qtnf6	nonsynonymous SNV	C1qtnf6:NM_028331:exon3:c.G327T:p.Q109H	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999521	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	78888161	12A2p6	cell line	sgMsh2	78888161	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	85	0	0	NA	exonic	Gga1	nonsynonymous SNV	Gga1:NM_145929:exon8:c.G660T:p.E220D	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9993768	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	71	0	0	NA	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9983971	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	117	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999282	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	79424842	12A2p6	cell line	sgMsh2	79424842	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	122	0	0	NA	exonic	Csnk1e	nonsynonymous SNV	"Csnk1e:NM_001289898:exon7:c.T883A:p.F295I,Csnk1e:NM_001289899:exon7:c.T883A:p.F295I,Csnk1e:NM_001359862:exon7:c.T883A:p.F295I,Csnk1e:NM_001359863:exon7:c.T883A:p.F295I,Csnk1e:NM_013767:exon7:c.T883A:p.F295I"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.391550136	3	0.09378905	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	79677203	12A2p6	cell line	sgMsh2	79677203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	177	0	0	NA	exonic	Josd1	nonsynonymous SNV	Josd1:NM_028792:exon3:c.C403T:p.L135F	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999988	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	80378226	12A2p6	cell line	sgMsh2	80378226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon25:c.T4142C:p.V1381A	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.36824358	3	0.994006	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	174	0	0	NA	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999985	TCG	synonymous	NA	NA	NA	NA
M2_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	268	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.242388179	3	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	221	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.265694735	3	2.16E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr15	81616730	12A2p6	cell line	sgMsh2	81616730	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	317	0	0	NA	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon8:c.A1630C:p.M544L	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.508082914	2	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	81851681	12A2p6	cell line	sgMsh2	81851681	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	27	0	0	NA	exonic	Tob2	nonsynonymous SNV	Tob2:NM_020507:exon2:c.G86T:p.G29V	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9696004	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	81917391	12A2p6	cell line	sgMsh2	81917391	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	99	0	0	NA	exonic	Polr3h	nonsynonymous SNV	Polr3h:NM_030229:exon5:c.G370A:p.E124K	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9997578	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	82042107	12A2p6	cell line	sgMsh2	82042107	T	C	SNV	Mutect2;Vardict	2	0.043	352	0	0	NA	exonic	Snu13	stoploss	Snu13:NM_011482:exon3:c.A386G:p.X129W	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.200436379	3	1	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	82791831	12A2p6	cell line	sgMsh2	82791831	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	319	0	0	NA	exonic	Cyp2d26	synonymous SNV	Cyp2d26:NM_029562:exon5:c.C679T:p.L227L	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.09E-09	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr15	82855207	12A2p6	cell line	sgMsh2	82855207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	227	0	0	NA	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.T2042C:p.L681P,Tcf20:NM_013836:exon2:c.T2042C:p.L681P"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	4.36E-08	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	83577883	12A2p6	cell line	sgMsh2	83577883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	236	0	0	NA	exonic	Ttll12	synonymous SNV	Ttll12:NM_183017:exon13:c.T1632C:p.A544A	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	2.42E-08	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	83935968	12A2p6	cell line	sgMsh2	83935968	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	205	0	0	NA	exonic	Efcab6	nonsynonymous SNV	"Efcab6:NM_001161628:exon1:c.G47A:p.G16D,Efcab6:NM_029946:exon18:c.G2111A:p.G704D"	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.442824558	2	0.8661608	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	489	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	84199866	12A2p6	cell line	sgMsh2	84199866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	143	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon5:c.A416G:p.N139S	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.41019538	3	0.7717008	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	220	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.349598335	3	0.9999471	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	278	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	2.36E-09	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	472	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.177129823	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	89419923	12A2p6	cell line	sgMsh2	89419923	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	169	0	0	NA	exonic	Cpt1b	frameshift deletion	Cpt1b:NM_009948:exon13:c.1544delC:p.P515Lfs*21	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M2_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	264	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	89549659	12A2p6	cell line	sgMsh2	89549659	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	59	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon21:c.G4606A:p.A1536T	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.9291521	CGC	nonsynonymous	GCCC	12	GCCCGCCCGCCC	NA
M2_p20	chr15	91858714	12A2p6	cell line	sgMsh2	91858714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	274	0	0	NA	exonic	Smgc	nonsynonymous SNV	Smgc:NM_198927:exon15:c.T1693C:p.S565P	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	2.78E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	267	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	3.86E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr15	96416961	12A2p6	cell line	sgMsh2	96416961	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	63	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon12:c.T3839C:p.M1280T	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.363582269	3	0.8720815	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	96690131	12A2p6	cell line	sgMsh2	96690131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	200	0	0	NA	exonic	Slc38a2	nonsynonymous SNV	"Slc38a2:NM_001355633:exon15:c.A1274G:p.H425R,Slc38a2:NM_175121:exon16:c.A1511G:p.H504R"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.433501936	2	0.6816945	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	97384571	12A2p6	cell line	sgMsh2	97384571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	144	0	0	NA	exonic	Pced1b	nonsynonymous SNV	Pced1b:NM_172293:exon6:c.A490G:p.T164A	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999884	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	132	0	0	NA	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999739	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	160	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999961	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	337	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	1.03E-09	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	182	0	0	NA	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999991	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	98721052	12A2p6	cell line	sgMsh2	98721052	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	98	0	0	NA	exonic	Ccdc65	nonsynonymous SNV	Ccdc65:NM_153518:exon6:c.A911G:p.H304R	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.372904891	3	0.9408115	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	98861651	12A2p6	cell line	sgMsh2	98861651	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	52	0	0	NA	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon12:c.G3725A:p.G1242E	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9942402	CCC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	296	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	84	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9993332	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	102281199	12A2p6	cell line	sgMsh2	102281199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	164	0	0	NA	exonic	Mfsd5	synonymous SNV	Mfsd5:NM_134100:exon2:c.A1005G:p.P335P	15qF3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	1	0.53138947	2	0.9999522	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr15	102445898	12A2p6	cell line	sgMsh2	102445898	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	163	0	0	NA	exonic	Amhr2	nonsynonymous SNV	"Amhr2:NM_144547:exon2:c.G143C:p.G48A,Amhr2:NM_001356575:exon3:c.G143C:p.G48A"	15qF3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999968	GGC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	156	0	0	NA	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	chr15-3279130-102635134	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999948	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr15	102709872	12A2p6	cell line	sgMsh2	102709872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	146	0	0	NA	exonic	Calcoco1	nonsynonymous SNV	Calcoco1:NM_026192:exon11:c.A1481G:p.Q494R	15qF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr15	103333197	12A2p6	cell line	sgMsh2	103333197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	42	0	0	NA	exonic	Zfp385a	synonymous SNV	Zfp385a:NM_013866:exon2:c.C15T:p.S5S	15qF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	292	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M2_p20	chr15	103521471	12A2p6	cell line	sgMsh2	103521471	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	114	0	0	NA	exonic	Pde1b	synonymous SNV	"Pde1b:NM_001285890:exon3:c.T333A:p.A111A,Pde1b:NM_001357980:exon3:c.T333A:p.A111A,Pde1b:NM_008800:exon4:c.T390A:p.A130A"	15qF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	196	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	250	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	3906995	12A2p6	cell line	sgMsh2	3906995	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	33	0	0	NA	exonic	1700037C18Rik	nonsynonymous SNV	1700037C18Rik:NM_028484:exon2:c.C204A:p.H68Q	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	4497210	12A2p6	cell line	sgMsh2	4497210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	92	0	0	NA	exonic	Srl	synonymous SNV	Srl:NM_175347:exon2:c.A567G:p.G189G	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	51	0	0	NA	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	252	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	8.88E-09	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	110	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998848	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	46	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	9.89E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	290	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.60E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	183	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999992	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999994	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	123	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999521	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	214	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999998	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	105	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.918278294	1	0.9968737	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	219	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.806406827	1	0.8551794	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	203	0	0	NA	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M2_p20	chr16	15663059	12A2p6	cell line	sgMsh2	15663059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	448	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon11:c.T1043G:p.I348S	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	190	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	15674077	12A2p6	cell line	sgMsh2	15674077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	163	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon17:c.T1885A:p.C629S	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.480115047	2	0.9939279	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	189	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	114	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9994937	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	65	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9975982	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17257481	12A2p6	cell line	sgMsh2	17257481	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	120	0	0	NA	exonic	Hic2	nonsynonymous SNV	Hic2:NM_178922:exon3:c.G173A:p.R58Q	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999414	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17299468	12A2p6	cell line	sgMsh2	17299468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	73	0	0	NA	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon36:c.T4088C:p.L1363P,Pi4ka:NM_001373955:exon36:c.T4271C:p.L1424P"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.666567493	2	0.8633975	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	317	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.717841915	2	0.999617	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.862342561	1	0.9929818	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17650037	12A2p6	cell line	sgMsh2	17650037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	74	0	0	NA	exonic	Ccdc74a	nonsynonymous SNV	Ccdc74a:NM_001166164:exon6:c.A757G:p.K253E	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.661906182	2	0.8819151	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	17895029	12A2p6	cell line	sgMsh2	17895029	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	131	0	0	NA	exonic	Tssk1	nonsynonymous SNV	Tssk1:NM_009435:exon1:c.G677A:p.R226H	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999721	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	85	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9921702	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	86	0	0	NA	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9994174	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9998908	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	20687152	12A2p6	cell line	sgMsh2	20687152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	198	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3914C:p.L1305P,Eif4g1:NM_145941:exon27:c.T3956C:p.L1319P"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.526728159	2	0.9999887	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	213	0	0	NA	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.876326494	1	0.999013	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	94	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.94158485	1	0.9977393	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	73	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985994	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	260	0	0	NA	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	5.59E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	26722564	12A2p6	cell line	sgMsh2	26722564	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	194	0	0	NA	exonic	Il1rap	synonymous SNV	"Il1rap:NM_001159317:exon11:c.T1554G:p.S518S,Il1rap:NM_001159318:exon11:c.T1554G:p.S518S"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	28372927	12A2p6	cell line	sgMsh2	28372927	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Fgf12	nonsynonymous SNV	"Fgf12:NM_001276419:exon3:c.T292G:p.Y98D,Fgf12:NM_001357064:exon3:c.T142G:p.Y48D,Fgf12:NM_183064:exon3:c.T400G:p.Y134D,Fgf12:NM_010199:exon4:c.T214G:p.Y72D"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9956529	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	29217635	12A2p6	cell line	sgMsh2	29217635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	375	0	0	NA	exonic	Plaat1	synonymous SNV	"Plaat1:NM_001357092:exon2:c.T24C:p.S8S,Plaat1:NM_001361289:exon2:c.T24C:p.S8S,Plaat1:NM_013751:exon2:c.T24C:p.S8S"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr16	30550411	12A2p6	cell line	sgMsh2	30550411	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.333	11	0	0	NA	exonic	Tmem44	nonsynonymous SNV	"Tmem44:NM_001357414:exon1:c.T89G:p.F30C,Tmem44:NM_001384248:exon1:c.T89G:p.F30C,Tmem44:NM_172614:exon1:c.T89G:p.F30C"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9142164	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	31944354	12A2p6	cell line	sgMsh2	31944354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	31	0	0	NA	exonic	Pigz	synonymous SNV	Pigz:NM_172822:exon3:c.T229C:p.L77L	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9766306	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr16	32497134	12A2p6	cell line	sgMsh2	32497134	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	157	0	0	NA	exonic	Zdhhc19	synonymous SNV	Zdhhc19:NM_199309:exon2:c.G48A:p.Q16Q	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999952	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	193	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	301	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.29E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	32959497	12A2p6	cell line	sgMsh2	32959497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	110	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon5:c.T743C:p.L248S,Lrch3:NM_001310672:exon5:c.T743C:p.L248S,Lrch3:NM_001310673:exon5:c.T743C:p.L248S,Lrch3:NM_001310674:exon5:c.T743C:p.L248S"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.829713383	1	0.9304641	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	226	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	4.66E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	33226939	12A2p6	cell line	sgMsh2	33226939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	352	0	0	NA	exonic	Osbpl11	nonsynonymous SNV	Osbpl11:NM_176840:exon9:c.T1271C:p.I424T	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.01E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	33875813	12A2p6	cell line	sgMsh2	33875813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	163	0	0	NA	exonic	Itgb5	nonsynonymous SNV	"Itgb5:NM_001145884:exon4:c.A373G:p.T125A,Itgb5:NM_010580:exon4:c.A373G:p.T125A"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9973823	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	116	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	34879457	12A2p6	cell line	sgMsh2	34879457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	118	0	0	NA	exonic	Mylk	nonsynonymous SNV	Mylk:NM_139300:exon8:c.A1189G:p.T397A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999329	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.364	17	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9418551	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr16	35825087	12A2p6	cell line	sgMsh2	35825087	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	73	0	0	NA	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon8:c.G1141T:p.V381L	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9985994	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	201	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	36517640	12A2p6	cell line	sgMsh2	36517640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	168	0	0	NA	exonic	Casr	nonsynonymous SNV	Casr:NM_013803:exon2:c.A147C:p.Q49H	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999977	CTT	nonsynonymous	GATCTT	12	GATCTTGATCTT	NA
M2_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	213	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GAT	synonymous	NA	NA	NA	NA
M2_p20	chr16	36721623	12A2p6	cell line	sgMsh2	36721623	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	exonic	Ildr1	nonsynonymous SNV	"Ildr1:NM_001285788:exon6:c.G729T:p.R243S,Ildr1:NM_134109:exon6:c.G729T:p.R243S"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9862522	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	36722222	12A2p6	cell line	sgMsh2	36722222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	23	0	0	NA	exonic	Ildr1	nonsynonymous SNV	"Ildr1:NM_001285791:exon6:c.A983G:p.H328R,Ildr1:NM_001285788:exon7:c.A1115G:p.H372R,Ildr1:NM_134109:exon7:c.A1115G:p.H372R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9605344	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	36751804	12A2p6	cell line	sgMsh2	36751804	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	157	0	0	NA	exonic	Slc15a2	nonsynonymous SNV	Slc15a2:NM_021301:exon22:c.C2197A:p.L733I	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.876326494	1	0.9960554	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	163	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999968	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	67	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.997901	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	38610789	12A2p6	cell line	sgMsh2	38610789	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	287	0	0	NA	exonic	Arhgap31	nonsynonymous SNV	Arhgap31:NM_020260:exon9:c.G1028A:p.S343N	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.540712092	2	9.59E-09	GCT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr16	43881076	12A2p6	cell line	sgMsh2	43881076	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.106	179	0	0	NA	exonic	Qtrt2	synonymous SNV	"Qtrt2:NM_001356329:exon2:c.T120C:p.T40T,Qtrt2:NM_029128:exon2:c.T120C:p.T40T"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.494098981	2	0.999076	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	344	0	0	NA	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.02E-09	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr16	44159507	12A2p6	cell line	sgMsh2	44159507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	172	0	0	NA	exonic	Naa50	nonsynonymous SNV	"Naa50:NM_001347239:exon5:c.A377G:p.K126R,Naa50:NM_028108:exon5:c.A374G:p.K125R"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.596647826	2	0.999978	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	229	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9999987	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	44273749	12A2p6	cell line	sgMsh2	44273749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	229	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.C1037T:p.S346F	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	3.82E-08	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	44386790	12A2p6	cell line	sgMsh2	44386790	A	-	Deletion	Strelka2;Vardict	2	0.2464	138	0	0	NA	exonic	Spice1	frameshift deletion	Spice1:NM_144550:exon18:c.2534delA:p.N848Mfs*14	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M2_p20	chr16	45751351	12A2p6	cell line	sgMsh2	45751351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	88	0	0	NA	exonic	Phldb2	nonsynonymous SNV	"Phldb2:NM_001357078:exon15:c.A3389G:p.Y1130C,Phldb2:NM_153412:exon16:c.A3518G:p.Y1173C,Phldb2:NM_001252442:exon17:c.A3677G:p.Y1226C"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9813394	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	45825830	12A2p6	cell line	sgMsh2	45825830	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	101	0	0	NA	exonic	Phldb2	synonymous SNV	"Phldb2:NM_001252442:exon2:c.C252T:p.S84S,Phldb2:NM_001357078:exon2:c.C252T:p.S84S,Phldb2:NM_153412:exon2:c.C252T:p.S84S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997884	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	421	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	49018537	12A2p6	cell line	sgMsh2	49018537	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	163	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon21:c.A2716C:p.S906R	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999968	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	66	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9977547	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	193	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	225	0	0	NA	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	4.98E-08	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	280	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	2.19E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	56675139	12A2p6	cell line	sgMsh2	56675139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	210	0	0	NA	exonic	Abi3bp	synonymous SNV	"Abi3bp:NM_001014399:exon22:c.A2013G:p.P671P,Abi3bp:NM_178790:exon29:c.A2523G:p.P841P,Abi3bp:NM_001014422:exon30:c.A2583G:p.P861P,Abi3bp:NM_001014424:exon31:c.A2631G:p.P877P,Abi3bp:NM_001014423:exon34:c.A2823G:p.P941P"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	95	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9996827	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	57047086	12A2p6	cell line	sgMsh2	57047086	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	85	0	0	NA	exonic	Tmem45a2	nonsynonymous SNV	"Tmem45a2:NM_001358101:exon3:c.T251G:p.F84C,Tmem45a2:NM_183281:exon4:c.T251G:p.F84C"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.666567493	2	0.9180735	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	57163543	12A2p6	cell line	sgMsh2	57163543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	312	0	0	NA	exonic	Nit2	nonsynonymous SNV	Nit2:NM_023175:exon4:c.G311A:p.G104E	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.14E-09	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	57632416	12A2p6	cell line	sgMsh2	57632416	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	196	0	0	NA	exonic	Col8a1	nonsynonymous SNV	Col8a1:NM_007739:exon3:c.C223T:p.P75S	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.484776359	2	0.9985645	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	58493683	12A2p6	cell line	sgMsh2	58493683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	449	0	0	NA	exonic	St3gal6	nonsynonymous SNV	"St3gal6:NM_001357433:exon3:c.A86G:p.Y29C,St3gal6:NM_018784:exon3:c.A86G:p.Y29C,St3gal6:NM_001357434:exon4:c.A86G:p.Y29C,St3gal6:NM_001357435:exon4:c.A86G:p.Y29C"	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	58717681	12A2p6	cell line	sgMsh2	58717681	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	133	0	0	NA	exonic	Gpr15	nonsynonymous SNV	Gpr15:NM_001162955:exon1:c.G1044T:p.E348D	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999756	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	325	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.06E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	230	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	393	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	59215763	12A2p6	cell line	sgMsh2	59215763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	150	0	0	NA	exonic	Olfr199	synonymous SNV	Olfr199:NM_207550:exon1:c.T849C:p.P283P	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999923	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr16	59328813	12A2p6	cell line	sgMsh2	59328813	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	270	0	0	NA	exonic	Olfr205	frameshift deletion	Olfr205:NM_001011736:exon1:c.695delG:p.G232Afs*27	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr16	59361437	12A2p6	cell line	sgMsh2	59361437	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	291	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.C780A:p.L260L,Olfr209:NM_207551:exon1:c.C780A:p.L260L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.349598335	3	0.9999982	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998151	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	55	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2_p20	chr16	59554119	12A2p6	cell line	sgMsh2	59554119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	151	0	0	NA	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon4:c.T6771C:p.S2257S	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999928	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr16	60060194	12A2p6	cell line	sgMsh2	60060194	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	145	0	0	NA	exonic	Epha6	stopgain	Epha6:NM_007938:exon6:c.G1640A:p.W547X	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999892	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	62811849	12A2p6	cell line	sgMsh2	62811849	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	206	0	0	NA	exonic	Arl13b	nonsynonymous SNV	Arl13b:NM_026577:exon5:c.G689T:p.R230I	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999996	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	63552585	12A2p6	cell line	sgMsh2	63552585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	290	0	0	NA	exonic	Epha3	synonymous SNV	"Epha3:NM_001362452:exon16:c.T2751C:p.G917G,Epha3:NM_010140:exon16:c.T2754C:p.G918G"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.60E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr16	64766537	12A2p6	cell line	sgMsh2	64766537	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	168	0	0	NA	exonic	4930453N24Rik	nonsynonymous SNV	4930453N24Rik:NM_026273:exon3:c.G823A:p.G275R	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999977	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	61	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M2_p20	chr16	65523509	12A2p6	cell line	sgMsh2	65523509	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	163	0	0	NA	exonic	Pou1f1	frameshift deletion	Pou1f1:NM_001362468:exon1:c.59delA:p.T21Lfs*9	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	479	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	62	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9970603	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	85544850	12A2p6	cell line	sgMsh2	85544850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	221	0	0	NA	exonic	Cyyr1	synonymous SNV	Cyyr1:NM_144853:exon2:c.C147A:p.S49S	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr16	85795509	12A2p6	cell line	sgMsh2	85795509	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	305	0	0	NA	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.C2799A:p.T933T	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	1.22E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	176	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999987	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	88707389	12A2p6	cell line	sgMsh2	88707389	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	111	0	0	NA	exonic	2310061N02Rik	nonsynonymous SNV	2310061N02Rik:NM_027155:exon1:c.T519G:p.S173R	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998923	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	89811895	12A2p6	cell line	sgMsh2	89811895	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	153	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145887:exon3:c.C323T:p.T108I,Tiam1:NM_001145886:exon18:c.C3230T:p.T1077I,Tiam1:NM_009384:exon18:c.C3230T:p.T1077I"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.999773	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	228	0	0	NA	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	4.08E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	68	0	0	NA	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M2_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	204	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M2_p20	chr16	91656187	12A2p6	cell line	sgMsh2	91656187	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	54	0	0	NA	exonic	Son	synonymous SNV	"Son:NM_019973:exon3:c.T1821C:p.S607S,Son:NM_178880:exon3:c.T1821C:p.S607S"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.554696026	2	0.9424164	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr16	91682114	12A2p6	cell line	sgMsh2	91682114	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	255	0	0	NA	exonic	Donson	nonsynonymous SNV	Donson:NM_021720:exon8:c.C1313T:p.A438V	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.508082914	2	0.9999923	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	91896360	12A2p6	cell line	sgMsh2	91896360	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	137	0	0	NA	exonic	Itsn1	nonsynonymous SNV	Itsn1:NM_010587:exon32:c.C4087T:p.P1363S	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999814	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	84	0	0	NA	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9918719	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr16	93870870	12A2p6	cell line	sgMsh2	93870870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	300	0	0	NA	exonic	Morc3	nonsynonymous SNV	Morc3:NM_001045529:exon15:c.A2135C:p.E712A	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9912214	GAA	nonsynonymous	AAGA	8	AAGAAAGA	NA
M2_p20	chr16	94666002	12A2p6	cell line	sgMsh2	94666002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	268	0	0	NA	exonic	Dyrk1a	synonymous SNV	"Dyrk1a:NM_001347731:exon4:c.T387C:p.D129D,Dyrk1a:NM_001113389:exon5:c.T414C:p.D138D,Dyrk1a:NM_007890:exon5:c.T414C:p.D138D"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9878387	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	177	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	96683801	12A2p6	cell line	sgMsh2	96683801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	120	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon18:c.T3325C:p.W1109R	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999414	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	201	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr17	3164188	12A2p6	cell line	sgMsh2	3164188	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	252	0	0	NA	exonic	Scaf8	nonsynonymous SNV	Scaf8:NM_134123:exon6:c.G517T:p.G173C	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.759793716	2	0.09416653	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	6029821	12A2p6	cell line	sgMsh2	6029821	-	C	Insertion	Strelka2;Vardict	2	0.1529	85	0	0	NA	exonic	Synj2	frameshift insertion	"Synj2:NM_011523:exon22:c.3070dupC:p.P1027Sfs*42,Synj2:NM_001113353:exon23:c.3325dupC:p.P1112Sfs*42"	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.712714473	NA	NA	GAC	frameshift	C	8	CCCCCCCC	1
M2_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	536	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	8184440	12A2p6	cell line	sgMsh2	8184440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	86	0	0	NA	exonic	Cep43	synonymous SNV	"Cep43:NM_201230:exon8:c.A786G:p.S262S,Cep43:NM_001197046:exon9:c.A846G:p.S282S"	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.582663892	2	0.9927033	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	0	0	NA	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999985	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	963	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.619954382	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	1039	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	0.582663892	2	1	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	83	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-14959781	4	2	2	0.9	4.195180026	NA	1	1	1	0.9992867	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999772	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	353	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	328	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	258	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	6.25E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.262	582	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19066095	12A2p6	cell line	sgMsh2	19066095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	868	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G854T:p.R285M	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	365	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19521940	12A2p6	cell line	sgMsh2	19521940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	504	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon3:c.A575G:p.Y192C	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19522240	12A2p6	cell line	sgMsh2	19522240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	255	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon3:c.T875C:p.L292S	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	7.43E-09	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19523467	12A2p6	cell line	sgMsh2	19523467	T	C	SNV	Mutect2;Vardict	2	0.026	234	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon4:c.T1391C:p.I464T	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.12119409	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	912	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.223	624	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	337	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.03E-09	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	298	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.35E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	307	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.19E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	20277625	12A2p6	cell line	sgMsh2	20277625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	152	0	0	NA	exonic	Vmn2r106	stopgain	"Vmn2r106:NM_001104568:exon4:c.A1351T:p.R451X,Vmn2r106:NM_001385160:exon4:c.A1339T:p.R447X"	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999932	CTC	nonsynonymous	TC	8	TCTCTCTC	NA
M2_p20	chr17	20472197	12A2p6	cell line	sgMsh2	20472197	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.216	214	0	0	NA	exonic	Vmn2r108	synonymous SNV	Vmn2r108:NM_001104570:exon2:c.G396A:p.Q132Q	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	TCT	synonymous	T	5	TTTTT	NA
M2_p20	chr17	20574669	12A2p6	cell line	sgMsh2	20574669	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	337	0	0	NA	exonic	Vmn2r110	synonymous SNV	Vmn2r110:NM_001104572:exon6:c.C1737A:p.A579A	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	1.88E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr17	20735632	12A2p6	cell line	sgMsh2	20735632	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	289	0	0	NA	exonic	Vmn1r227	nonsynonymous SNV	Vmn1r227:NM_134195:exon1:c.A427T:p.N143Y	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.65E-09	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	328	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.05E-09	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	228	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	4.94E-08	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	700	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	1.02E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	22602486	12A2p6	cell line	sgMsh2	22602486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	292	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.G439A:p.A147T	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.494098981	2	0.9999841	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	22603195	12A2p6	cell line	sgMsh2	22603195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	694	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon3:c.T853C:p.F285L	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	22618283	12A2p6	cell line	sgMsh2	22618283	A	C	SNV	Mutect2;MuSe;Vardict	3	0.057	1180	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon6:c.A1724C:p.K575T	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.265694735	3	1	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	22852213	12A2p6	cell line	sgMsh2	22852213	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	300	0	0	NA	exonic	Zfp945	synonymous SNV	"Zfp945:NM_001110254:exon5:c.C774A:p.P258P,Zfp945:NM_177358:exon6:c.C711A:p.P237P"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.31E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	238	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.978875339	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	133	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999756	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Vardict	2	0.114	46	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.53138947	2	0.9025667	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	24593600	12A2p6	cell line	sgMsh2	24593600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	63	0	0	NA	exonic	Pkd1	nonsynonymous SNV	Pkd1:NM_013630:exon41:c.A11506G:p.R3836G	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.759793716	1	0.6599869	CAG	nonsynonymous	GGTG	8	GGTGGGTG	NA
M2_p20	chr17	24721252	12A2p6	cell line	sgMsh2	24721252	A	G	SNV	Mutect2;MuSe;Vardict	3	0.075	207	0	0	NA	exonic	Rps2	nonsynonymous SNV	Rps2:NM_008503:exon4:c.A659G:p.D220G	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.349598335	3	0.9999022	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	170	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.999998	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	59	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9964023	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	112	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998993	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M2_p20	chr17	25492187	12A2p6	cell line	sgMsh2	25492187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	117	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.A67G:p.N23D,Sstr5:NM_011425:exon3:c.A67G:p.N23D"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.894971739	1	0.9950023	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	25720619	12A2p6	cell line	sgMsh2	25720619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	182	0	0	NA	exonic	Chtf18	nonsynonymous SNV	Chtf18:NM_145409:exon18:c.T2419C:p.Y807H	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.918278294	1	0.9998478	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9934126	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	25965277	12A2p6	cell line	sgMsh2	25965277	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	60	0	0	NA	exonic	Capn15	nonsynonymous SNV	"Capn15:NM_015830:exon1:c.G229A:p.A77T,Capn15:NM_001347334:exon3:c.G427A:p.A143T"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.526728159	2	0.9635913	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	26117514	12A2p6	cell line	sgMsh2	26117514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	128	0	0	NA	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon4:c.T605C:p.L202P	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999531	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	93	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9996368	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	27	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9696004	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	27706002	12A2p6	cell line	sgMsh2	27706002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	122	0	0	NA	exonic	Pacsin1	nonsynonymous SNV	"Pacsin1:NM_001286743:exon6:c.A689G:p.Q230R,Pacsin1:NM_001286744:exon6:c.A689G:p.Q230R,Pacsin1:NM_011861:exon6:c.A689G:p.Q230R,Pacsin1:NM_178365:exon6:c.A689G:p.Q230R"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999488	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	203	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	85	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.820390761	1	0.8911855	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	125	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999582	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	77	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.848358627	1	0.9428708	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	129	0	0	NA	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	271	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	3.18E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	172	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999983	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	46	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9913869	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M2_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	213	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9999839	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30517143	12A2p6	cell line	sgMsh2	30517143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	225	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon5:c.T995C:p.I332T,Btbd9:NM_172618:exon5:c.T995C:p.I332T"	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30670690	12A2p6	cell line	sgMsh2	30670690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	368	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon15:c.T2196C:p.A732A	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.685212737	2	0.9999987	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr17	30677186	12A2p6	cell line	sgMsh2	30677186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	328	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon18:c.T2573C:p.M858T	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.540712092	2	1.65E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30721045	12A2p6	cell line	sgMsh2	30721045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	477	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon36:c.T4964C:p.L1655P	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.680551426	2	7.75E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30759748	12A2p6	cell line	sgMsh2	30759748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	212	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon60:c.A8998G:p.K3000E	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.829713383	1	0.9700935	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Vardict	2	0.12	152	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.559357337	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.142	119	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.661906182	2	0.9856623	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	101	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.876326494	1	0.9843733	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	191	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M2_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	175	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999986	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	33137855	12A2p6	cell line	sgMsh2	33137855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	208	0	0	NA	exonic	Morc2b	synonymous SNV	"Morc2b:NM_177719:exon2:c.T942C:p.R314R,Morc2b:NM_001360203:exon3:c.T942C:p.R314R"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr17	33531655	12A2p6	cell line	sgMsh2	33531655	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.13	71	0	0	NA	exonic	Adamts10	nonsynonymous SNV	Adamts10:NM_172619:exon5:c.A668G:p.E223G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.605970448	2	0.9617274	GAA	nonsynonymous	GAAT	8	GAATGAAT	NA
M2_p20	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	62	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9970603	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	33749960	12A2p6	cell line	sgMsh2	33749960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	170	0	0	NA	exonic	Rab11b	nonsynonymous SNV	Rab11b:NM_008997:exon2:c.T58C:p.S20P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999947	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	49	0	0	NA	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.675890115	2	0.6318168	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr17	33919944	12A2p6	cell line	sgMsh2	33919944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	80	0	0	NA	exonic	Tapbp	synonymous SNV	"Tapbp:NM_001025313:exon2:c.T111C:p.G37G,Tapbp:NM_009318:exon2:c.T111C:p.G37G"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.853019939	1	0.9515652	GTG	synonymous	G	5	GGGGG	NA
M2_p20	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	41	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9879684	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	42	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9887454	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	107	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998589	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	109	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.811068138	1	0.867918	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	25	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9653533	GAG	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr17	34594907	12A2p6	cell line	sgMsh2	34594907	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.278	56	0	0	NA	exonic	Pbx2	frameshift insertion	Pbx2:NM_017463:exon6:c.978dupG:p.H329Pfs*58	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAG	frameshift	G	5	GGGGG	1
M2_p20	chr17	34632174	12A2p6	cell line	sgMsh2	34632174	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	exonic	Prrt1	nonsynonymous SNV	"Prrt1:NM_001368730:exon3:c.G296A:p.G99E,Prrt1:NM_001368729:exon4:c.G512A:p.G171E,Prrt1:NM_030890:exon4:c.G835A:p.G279S,Prrt1:NM_001368728:exon5:c.G829A:p.G277S"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.820390761	1	0.8712262	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	109	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998767	GCT	synonymous	G	5	GGGGG	NA
M2_p20	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9968555	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	200	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	34839561	12A2p6	cell line	sgMsh2	34839561	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.166	32	0	0	NA	exonic	Skiv2l	synonymous SNV	Skiv2l:NM_021337:exon28:c.G3579A:p.L1193L	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.773777649	1	0.7853223	CCA	synonymous	NA	NA	NA	NA
M2_p20	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	98	0	0	NA	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.936923539	1	0.9978093	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34921886	12A2p6	cell line	sgMsh2	34921886	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	144	0	0	NA	exonic	Slc44a4	nonsynonymous SNV	Slc44a4:NM_023557:exon11:c.G956A:p.G319D	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.279678668	3	0.9999942	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34928074	12A2p6	cell line	sgMsh2	34928074	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	64	0	0	NA	exonic	Slc44a4	nonsynonymous SNV	Slc44a4:NM_023557:exon15:c.C1535G:p.A512G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9974308	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	34971869	12A2p6	cell line	sgMsh2	34971869	G	A	SNV	Mutect2;Vardict	2	0.064	94	0	0	NA	exonic	Hspa1a	synonymous SNV	Hspa1a:NM_010479:exon1:c.C57T:p.G19G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.298323913	3	0.9987306	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr17	35013184	12A2p6	cell line	sgMsh2	35013184	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	323	0	0	NA	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon20:c.C2407T:p.P803S	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.158484579	3	1	GCC	nonsynonymous	TGGC	8	TGGCTGGC	NA
M2_p20	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	145	0	0	NA	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999892	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr17	35637471	12A2p6	cell line	sgMsh2	35637471	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	114	0	0	NA	exonic	Mucl3	nonsynonymous SNV	Mucl3:NM_001033366:exon2:c.G1235A:p.G412D	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999121	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	79	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9990656	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr17	35689892	12A2p6	cell line	sgMsh2	35689892	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	48	0	0	NA	exonic	Ddr1	nonsynonymous SNV	"Ddr1:NM_001198831:exon8:c.A880G:p.T294A,Ddr1:NM_001198833:exon8:c.A880G:p.T294A,Ddr1:NM_172962:exon8:c.A880G:p.T294A,Ddr1:NM_007584:exon9:c.A880G:p.T294A"	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.619954382	2	0.8040046	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	35835148	12A2p6	cell line	sgMsh2	35835148	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	254	0	0	NA	exonic	Tubb5	nonsynonymous SNV	Tubb5:NM_011655:exon4:c.G1169A:p.R390H	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.85768125	1	0.998166	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	44	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9901535	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	80	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.759793716	1	6.40E-08	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	64	0	0	NA	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9974308	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	139	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.428840625	2	0.5803028	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	215	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	142	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999867	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	37530396	12A2p6	cell line	sgMsh2	37530396	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	611	0	0	NA	exonic	Olfr111	nonsynonymous SNV	Olfr111:NM_001005485:exon1:c.C418A:p.L140M	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	37624460	12A2p6	cell line	sgMsh2	37624460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	855	0	0	NA	exonic	Olfr116	synonymous SNV	Olfr116:NM_146632:exon1:c.A174G:p.P58P	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr17	37659791	12A2p6	cell line	sgMsh2	37659791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	350	0	0	NA	exonic	Olfr117	nonsynonymous SNV	Olfr117:NM_207155:exon1:c.C541T:p.P181S	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.01E-09	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	503	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	551	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M2_p20	chr17	37795799	12A2p6	cell line	sgMsh2	37795799	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	196	0	0	NA	exonic	Olfr123	synonymous SNV	Olfr123:NM_146630:exon1:c.C354T:p.F118F	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.167807201	3	1.00E-09	TCG	synonymous	NA	NA	NA	NA
M2_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.238	156	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M2_p20	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	292	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.848358627	1	0.997661	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	38130482	12A2p6	cell line	sgMsh2	38130482	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.218	222	0	0	NA	exonic	Olfr132	frameshift insertion	Olfr132:NM_001005481:exon1:c.708dupA:p.A237Sfs*32	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GCT	frameshift	T	5	TTTTT	1
M2_p20	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	191	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	565	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.311	68	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9980378	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	40958766	12A2p6	cell line	sgMsh2	40958766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	153	0	0	NA	exonic	Mmut	nonsynonymous SNV	Mmut:NM_008650:exon12:c.T2015C:p.L672P	17qB2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.666567493	2	0.9965326	CTT	nonsynonymous	TGC	8	TGCTGCTG	NA
M2_p20	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.369	35	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2_p20	chr17	42607147	12A2p6	cell line	sgMsh2	42607147	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	145	0	0	NA	exonic	Opn5	nonsynonymous SNV	Opn5:NM_181753:exon2:c.T223G:p.L75V	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.391550136	3	0.9426537	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	399	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	89	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995242	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	43624386	12A2p6	cell line	sgMsh2	43624386	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.257	59	0	0	NA	exonic	Tdrd6	nonsynonymous SNV	"Tdrd6:NM_001161366:exon1:c.A5770G:p.I1924V,Tdrd6:NM_001161367:exon1:c.A5770G:p.I1924V,Tdrd6:NM_198418:exon1:c.A5770G:p.I1924V,Tdrd6:NM_001357985:exon2:c.A5191G:p.I1731V"	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9964023	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	302	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.27E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	46125319	12A2p6	cell line	sgMsh2	46125319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	195	0	0	NA	exonic	Mrps18a	synonymous SNV	Mrps18a:NM_026768:exon4:c.G282T:p.R94R	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999996	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	169	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999979	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	15	0	0	NA	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9338748	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	111	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9985534	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	124	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999552	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	46446477	12A2p6	cell line	sgMsh2	46446477	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	43	0	0	NA	exonic	Ttbk1	nonsynonymous SNV	Ttbk1:NM_001162864:exon14:c.G3230T:p.R1077L	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9894727	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	46825776	12A2p6	cell line	sgMsh2	46825776	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	226	0	0	NA	exonic	Bicral	synonymous SNV	Bicral:NM_001100452:exon4:c.T507C:p.T169T	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	54	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9949643	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	50919205	12A2p6	cell line	sgMsh2	50919205	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	159	0	0	NA	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon11:c.A709T:p.M237L,Tbc1d5:NM_001285993:exon11:c.A709T:p.M237L,Tbc1d5:NM_028162:exon11:c.A709T:p.M237L"	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999958	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	53462944	12A2p6	cell line	sgMsh2	53462944	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	208	0	0	NA	exonic	Efhb	nonsynonymous SNV	Efhb:NM_172497:exon1:c.A336T:p.K112N	17qC	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	35	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9820643	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	132	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.999802	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	227	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	4.36E-08	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	104	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998272	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	56884903	12A2p6	cell line	sgMsh2	56884903	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	195	0	0	NA	exonic	Acsbg3	nonsynonymous SNV	Acsbg3:NM_030141:exon11:c.T1580G:p.L527R	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.680551426	2	0.9987975	CTA	nonsynonymous	GGCT	8	GGCTGGCT	NA
M2_p20	chr17	56900050	12A2p6	cell line	sgMsh2	56900050	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	48	0	0	NA	exonic	Mllt1	frameshift deletion	Mllt1:NM_022328:exon6:c.793delG:p.V265Cfs*160	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.936923539	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	165	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.839036005	1	0.9734806	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	57210260	12A2p6	cell line	sgMsh2	57210260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	200	0	0	NA	exonic	C3	synonymous SNV	C3:NM_009778:exon30:c.T3874C:p.L1292L	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	289	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.65E-09	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	64133519	12A2p6	cell line	sgMsh2	64133519	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	207	0	0	NA	exonic	Fer	nonsynonymous SNV	"Fer:NM_008000:exon12:c.A1020C:p.E340D,Fer:NM_001286415:exon16:c.A1956C:p.E652D,Fer:NM_001037997:exon17:c.A2130C:p.E710D"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.894971739	1	0.9996981	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	200	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	87	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9994555	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	65696356	12A2p6	cell line	sgMsh2	65696356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	310	0	0	NA	exonic	Rab31	nonsynonymous SNV	Rab31:NM_133685:exon5:c.A295G:p.K99E	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.16E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr17	65810572	12A2p6	cell line	sgMsh2	65810572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	301	0	0	NA	exonic	Ppp4r1	synonymous SNV	"Ppp4r1:NM_001114131:exon5:c.G279A:p.V93V,Ppp4r1:NM_146081:exon5:c.G330A:p.V110V"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.29E-09	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr17	66354310	12A2p6	cell line	sgMsh2	66354310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	63	0	0	NA	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon10:c.A3605C:p.K1202T,Mtcl1:NM_172963:exon10:c.A3605C:p.K1202T"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9972517	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	66498019	12A2p6	cell line	sgMsh2	66498019	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	252	0	0	NA	exonic	Rab12	nonsynonymous SNV	Rab12:NM_024448:exon4:c.G513T:p.K171N	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	8.88E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	131	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999721	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M2_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	231	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	3.35E-08	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	67800789	12A2p6	cell line	sgMsh2	67800789	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	76	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon45:c.T6397G:p.C2133G	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	67810356	12A2p6	cell line	sgMsh2	67810356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	54	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon53:c.A7500G:p.R2500R	17qE1.1	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9949643	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	68359534	12A2p6	cell line	sgMsh2	68359534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	157	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon3:c.A56G:p.N19S	17qE1.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999952	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	68764561	12A2p6	cell line	sgMsh2	68764561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	126	0	0	NA	exonic	L3mbtl4	synonymous SNV	L3mbtl4:NM_177278:exon19:c.T1482C:p.A494A	17qE1.2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999609	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr17	69259107	12A2p6	cell line	sgMsh2	69259107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	55	0	0	NA	exonic	Epb41l3	nonsynonymous SNV	"Epb41l3:NM_001355732:exon11:c.A931G:p.S311G,Epb41l3:NM_001355733:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355734:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355735:exon11:c.A1282G:p.S428G,Epb41l3:NM_001355736:exon11:c.A1282G:p.S428G,Epb41l3:NM_013813:exon11:c.A1282G:p.S428G"	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.755132405	1	6.81E-06	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	70786887	12A2p6	cell line	sgMsh2	70786887	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	149	0	0	NA	exonic	Dlgap1	nonsynonymous SNV	"Dlgap1:NM_001128180:exon7:c.C1272A:p.D424E,Dlgap1:NM_001128181:exon8:c.C1278A:p.D426E,Dlgap1:NM_001347413:exon8:c.C1302A:p.D434E,Dlgap1:NM_001347414:exon8:c.C1224A:p.D408E,Dlgap1:NM_027712:exon8:c.C2172A:p.D724E,Dlgap1:NM_177639:exon9:c.C2202A:p.D734E,Dlgap1:NM_001347412:exon11:c.C2172A:p.D724E,Dlgap1:NM_001347411:exon12:c.C2118A:p.D706E,Dlgap1:NM_001360665:exon12:c.C2172A:p.D724E"	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.522066848	2	0.9997508	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	71231446	12A2p6	cell line	sgMsh2	71231446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	129	0	0	NA	exonic	Lpin2	synonymous SNV	"Lpin2:NM_001164885:exon7:c.T1200C:p.P400P,Lpin2:NM_001357791:exon7:c.T1086C:p.P362P,Lpin2:NM_022882:exon7:c.T1086C:p.P362P"	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.433501936	2	0.6652051	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	19	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.978875339	1	0.9416966	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr17	72603534	12A2p6	cell line	sgMsh2	72603534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	31	0	0	NA	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon1:c.T176C:p.V59A	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9766306	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	73161828	12A2p6	cell line	sgMsh2	73161828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	171	0	0	NA	exonic	Lclat1	nonsynonymous SNV	"Lclat1:NM_001081071:exon2:c.T2C:p.M1T,Lclat1:NM_001177967:exon2:c.T2C:p.M1T,Lclat1:NM_001177968:exon2:c.T2C:p.M1T"	17qE1.3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999981	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	73805461	12A2p6	cell line	sgMsh2	73805461	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	131	0	0	NA	exonic	Ehd3	synonymous SNV	Ehd3:NM_020578:exon1:c.C219T:p.T73T	17qE2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999721	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.277	130	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999702	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	74690358	12A2p6	cell line	sgMsh2	74690358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	99	0	0	NA	exonic	Birc6	frameshift deletion	Birc6:NM_007566:exon67:c.13550delA:p.K4519Nfs*1	17qE2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M2_p20	chr17	74724705	12A2p6	cell line	sgMsh2	74724705	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	286	0	0	NA	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon4:c.C496A:p.L166I	17qE2	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	3.55E-09	GCT	nonsynonymous	CTG	8	CTGCTGCT	NA
M2_p20	chr17	78655808	12A2p6	cell line	sgMsh2	78655808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	295	0	0	NA	exonic	Strn	nonsynonymous SNV	Strn:NM_011500:exon17:c.A2114G:p.H705R	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.442824558	2	0.9202445	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	78840118	12A2p6	cell line	sgMsh2	78840118	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	104	0	0	NA	exonic	Gpatch11	synonymous SNV	Gpatch11:NM_181649:exon5:c.A327T:p.T109T	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.391550136	3	0.8644052	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	133	0	0	NA	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.964891406	1	0.9998776	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	223	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	80202195	12A2p6	cell line	sgMsh2	80202195	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	201	0	0	NA	exonic	Srsf7	nonsynonymous SNV	"Srsf7:NM_001195485:exon7:c.A627T:p.K209N,Srsf7:NM_001195486:exon7:c.A603T:p.K201N,Srsf7:NM_146083:exon7:c.A636T:p.K212N"	17qE3	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.671228804	2	0.9995132	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	285	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.85E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	298	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	1.35E-09	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M2_p20	chr17	83445986	12A2p6	cell line	sgMsh2	83445986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	390	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon8:c.T749C:p.L250P,Eml4:NM_001114362:exon9:c.T878C:p.L293P,Eml4:NM_001357886:exon9:c.T782C:p.L261P,Eml4:NM_001379373:exon10:c.T1052C:p.L351P,Eml4:NM_001379374:exon10:c.T911C:p.L304P,Eml4:NM_001114361:exon11:c.T1085C:p.L362P,Eml4:NM_001286567:exon11:c.T944C:p.L315P"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.717841915	2	0.9999571	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	161	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999963	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	101	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9357425	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	85023054	12A2p6	cell line	sgMsh2	85023054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	381	0	0	NA	exonic	Ppm1b	nonsynonymous SNV	Ppm1b:NM_001159498:exon7:c.A1157G:p.Y386C	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.717841915	2	0.9999438	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	34	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	2	1	1	0.980835	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr17	85065652	12A2p6	cell line	sgMsh2	85065652	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	137	0	0	NA	exonic	Prepl	nonsynonymous SNV	"Prepl:NM_001163623:exon12:c.A1733G:p.H578R,Prepl:NM_001163624:exon12:c.A1733G:p.H578R,Prepl:NM_001163622:exon13:c.A1994G:p.H665R,Prepl:NM_145984:exon13:c.A1733G:p.H578R"	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	0.321630469	3	0.9997058	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	107	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998589	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	86944888	12A2p6	cell line	sgMsh2	86944888	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	136	0	0	NA	exonic	Atp6v1e2	synonymous SNV	Atp6v1e2:NM_029121:exon2:c.G81A:p.A27A	17qE4	chr17-15053144-87650787	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999801	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.394	84	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	9.89821064	5.89821064	4	0.9	4.195180026	NA	4	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M2_p20	chr17	87986465	12A2p6	cell line	sgMsh2	87986465	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	73	0	0	NA	exonic	Msh6	nonsynonymous SNV	Msh6:NM_010830:exon4:c.A2647C:p.T883P	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985994	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	87990749	12A2p6	cell line	sgMsh2	87990749	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	148	0	0	NA	exonic	Msh6	nonsynonymous SNV	Msh6:NM_010830:exon10:c.C4021G:p.P1341A	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.195180026	NA	1	0.316969157	3	0.9999015	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	88486683	12A2p6	cell line	sgMsh2	88486683	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	60	0	0	NA	exonic	Foxn2	nonsynonymous SNV	"Foxn2:NM_001355743:exon5:c.G978T:p.E326D,Foxn2:NM_001355742:exon6:c.G1047T:p.E349D,Foxn2:NM_180974:exon6:c.G1047T:p.E349D"	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.195180026	NA	1	1	1	0.9966365	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr17	90037303	12A2p6	cell line	sgMsh2	90037303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	160	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T194C:p.M65T,Nrxn1:NM_001347419:exon3:c.T203C:p.M68T,Nrxn1:NM_001346960:exon6:c.T1091C:p.M364T,Nrxn1:NM_001346961:exon6:c.T1082C:p.M361T,Nrxn1:NM_001346958:exon7:c.T1172C:p.M391T,Nrxn1:NM_001346959:exon7:c.T1181C:p.M394T,Nrxn1:NM_001346957:exon19:c.T4157C:p.M1386T,Nrxn1:NM_177284:exon21:c.T4262C:p.M1421T,Nrxn1:NM_020252:exon23:c.T4298C:p.M1433T"	17qE5	chr17-87745782-94740433	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999961	CAT	nonsynonymous	CCA	9	CCACCACCA	NA
M2_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	201	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	71	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	314	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.787761583	2	0.5469789	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M2_p20	chr18	6626380	12A2p6	cell line	sgMsh2	6626380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	144	0	0	NA	exonic	4921524L21Rik	nonsynonymous SNV	"4921524L21Rik:NM_001362874:exon4:c.T232C:p.W78R,4921524L21Rik:NM_027598:exon6:c.T391C:p.W131R"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999884	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	6788502	12A2p6	cell line	sgMsh2	6788502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	75	0	0	NA	exonic	Rab18	synonymous SNV	"Rab18:NM_001278447:exon7:c.T486C:p.D162D,Rab18:NM_181070:exon7:c.T468C:p.D156D"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9987762	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	60	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9966365	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	10752016	12A2p6	cell line	sgMsh2	10752016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	245	0	0	NA	exonic	Mib1	synonymous SNV	"Mib1:NM_001364997:exon6:c.A897G:p.P299P,Mib1:NM_144860:exon6:c.A897G:p.P299P"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.77843896	2	0.6402391	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr18	12058929	12A2p6	cell line	sgMsh2	12058929	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	77	0	0	NA	exonic	Tmem241	nonsynonymous SNV	"Tmem241:NM_001289667:exon9:c.A280G:p.T94A,Tmem241:NM_001289666:exon11:c.A598G:p.T200A,Tmem241:NM_178801:exon11:c.A598G:p.T200A"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9989306	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	173	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999984	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	260	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.908955672	1	0.9999836	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	12744564	12A2p6	cell line	sgMsh2	12744564	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	243	0	0	NA	exonic	Cabyr	synonymous SNV	"Cabyr:NM_001042418:exon2:c.T48G:p.T16T,Cabyr:NM_001042419:exon2:c.T48G:p.T16T,Cabyr:NM_001042420:exon2:c.T48G:p.T16T,Cabyr:NM_027687:exon2:c.T48G:p.T16T,Cabyr:NM_181731:exon2:c.T48G:p.T16T"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1.55E-08	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr18	14974001	12A2p6	cell line	sgMsh2	14974001	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	183	0	0	NA	exonic	Kctd1	synonymous SNV	"Kctd1:NM_001142731:exon4:c.C2406T:p.Y802Y,Kctd1:NM_134112:exon4:c.C618T:p.Y206Y"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.853019939	1	0.9910029	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr18	16633065	12A2p6	cell line	sgMsh2	16633065	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	205	0	0	NA	exonic	Cdh2	synonymous SNV	Cdh2:NM_007664:exon8:c.A1101C:p.T367T	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.955568784	1	0.9999956	CTG	synonymous	GGCTGT	13	GGCTGTGGCTGTG	NA
M2_p20	chr18	16640472	12A2p6	cell line	sgMsh2	16640472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	150	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon7:c.A970G:p.N324D	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.797084205	1	0.7771824	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	177	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	2	1	1	0.9999988	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	21148207	12A2p6	cell line	sgMsh2	21148207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	216	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.G1091T:p.G364V	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.619954382	2	0.9999947	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	22017446	12A2p6	cell line	sgMsh2	22017446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	127	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon20:c.A2129G:p.D710G	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999634	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	22020892	12A2p6	cell line	sgMsh2	22020892	T	-	Deletion	Strelka2;Vardict	2	0.25	92	0	0	NA	exonic	Ccdc178	frameshift deletion	Ccdc178:NM_027616:exon18:c.1859delA:p.N620Mfs*1	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr18	22524412	12A2p6	cell line	sgMsh2	22524412	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	106	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.G5478T:p.Q1826H	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.85768125	1	0.9729815	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	228	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	4.08E-08	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	41	0	0	NA	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr18	25151231	12A2p6	cell line	sgMsh2	25151231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	314	0	0	NA	exonic	Tpgs2	synonymous SNV	"Tpgs2:NM_001004361:exon3:c.T219C:p.G73G,Tpgs2:NM_001142697:exon3:c.T78C:p.G26G,Tpgs2:NM_001142698:exon3:c.T219C:p.G73G"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1.12E-09	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	65	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9975982	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	42	0	0	NA	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.689874049	2	0.000566507	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	64	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.745809782	1	0.5838009	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34313032	12A2p6	cell line	sgMsh2	34313032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	211	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2803G:p.S935G,Apc:NM_007462:exon16:c.A2980G:p.S994G,Apc:NM_001360980:exon17:c.A3034G:p.S1012G"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.550034714	2	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	73	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.964891406	1	0.9966101	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34544872	12A2p6	cell line	sgMsh2	34544872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	43	0	0	NA	exonic	Wnt8a	nonsynonymous SNV	Wnt8a:NM_009290:exon4:c.A332G:p.N111S	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9894727	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999658	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	104	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.703857982	2	0.8789482	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	53	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.750471093	1	0.6563989	TAC	synonymous	T	5	TTTTT	NA
M2_p20	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	90	0	0	NA	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.890310428	1	0.9866833	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr18	35739535	12A2p6	cell line	sgMsh2	35739535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	exonic	Sting1	nonsynonymous SNV	"Sting1:NM_001289591:exon2:c.G190T:p.G64C,Sting1:NM_001289592:exon3:c.G43T:p.G15C,Sting1:NM_028261:exon3:c.G43T:p.G15C"	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997736	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	36737822	12A2p6	cell line	sgMsh2	36737822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	112	0	0	NA	exonic	Tmco6	synonymous SNV	Tmco6:NM_028036:exon4:c.C468A:p.T156T	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998993	CCT	synonymous	ACCT	19	CCTACCTCCTCACCTACCT	NA
M2_p20	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	32	0	0	NA	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.964891406	1	9.96E-07	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	36960578	12A2p6	cell line	sgMsh2	36960578	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	107	0	0	NA	exonic	Pcdha5	nonsynonymous SNV	Pcdha5:NM_009959:exon1:c.C139A:p.R47S	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998589	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	285	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1.85E-09	ATT	synonymous	ATT	9	ATTATTATT	NA
M2_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	208	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37295830	12A2p6	cell line	sgMsh2	37295830	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	146	0	0	NA	exonic	Pcdhb2	nonsynonymous SNV	Pcdhb2:NM_053127:exon1:c.A855C:p.Q285H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999899	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37296635	12A2p6	cell line	sgMsh2	37296635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	291	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.C1660T:p.L554L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.769116338	2	0.8732561	GCT	synonymous	GTG	9	GTGGTGGTG	NA
M2_p20	chr18	37296685	12A2p6	cell line	sgMsh2	37296685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	333	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.T1710G:p.S570S	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.908955672	1	0.9999988	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr18	37296838	12A2p6	cell line	sgMsh2	37296838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	469	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.G1863A:p.A621A	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2	2	0.127	73	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.591986515	2	0.9758246	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	175	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999986	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37412094	12A2p6	cell line	sgMsh2	37412094	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.408	161	0	0	NA	exonic	Pcdhb10	frameshift insertion	Pcdhb10:NM_053135:exon1:c.223dupT:p.L75Ffs*18	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TCT	frameshift	NA	NA	NA	1
M2_p20	chr18	37442887	12A2p6	cell line	sgMsh2	37442887	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	83	0	0	NA	exonic	Pcdhb13	frameshift deletion	Pcdhb13:NM_053138:exon1:c.317delG:p.V107Cfs*2	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	80	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9991266	ATT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	101	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997884	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr18	37499088	12A2p6	cell line	sgMsh2	37499088	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	589	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37499093	12A2p6	cell line	sgMsh2	37499093	A	G	SNV	Mutect2;Vardict	2	0.018	591	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.A1940G:p.N647S	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.083903601	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37515513	12A2p6	cell line	sgMsh2	37515513	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	344	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1694T:p.Q565L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.685212737	2	0.9999965	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	193	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	2	1	1	0.9999996	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37752069	12A2p6	cell line	sgMsh2	37752069	A	C	SNV	Mutect2;Vardict	2	0.08	156	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.A291C:p.K97N	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.372904891	3	0.9912399	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37807124	12A2p6	cell line	sgMsh2	37807124	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	105	0	0	NA	exonic	Pcdhgc3	nonsynonymous SNV	Pcdhgc3:NM_033581:exon1:c.T577A:p.Y193N	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.77843896	1	0.6658544	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	294	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	1.46E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	59	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9964023	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	153	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999937	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	130	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999702	GTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr18	42053994	12A2p6	cell line	sgMsh2	42053994	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	88	0	0	NA	exonic	Sh3rf2	synonymous SNV	"Sh3rf2:NM_001146299:exon1:c.C177T:p.S59S,Sh3rf2:NM_172966:exon1:c.C177T:p.S59S"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.999491	GCA	synonymous	NA	NA	NA	NA
M2_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	121	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.787761583	1	0.7180343	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	223	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	153	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999937	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	230	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	3.58E-08	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	357	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.806406827	1	0.8655393	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	47281795	12A2p6	cell line	sgMsh2	47281795	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	130	0	0	NA	exonic	Sema6a	frameshift deletion	"Sema6a:NM_001311097:exon13:c.1427delA:p.K476Sfs*6,Sema6a:NM_018744:exon13:c.1427delA:p.K476Sfs*6"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	CACT	8	CACTCACT	-1
M2_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	154	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999941	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	51	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9938402	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	104	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.65258356	2	0.9786616	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	134	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999772	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	114	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999121	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	58048872	12A2p6	cell line	sgMsh2	58048872	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	232	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon43:c.A5456C:p.N1819T	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	3.14E-08	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	58890286	12A2p6	cell line	sgMsh2	58890286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	136	0	0	NA	exonic	Adamts19	nonsynonymous SNV	Adamts19:NM_175506:exon3:c.A752G:p.Q251R	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.699196671	2	0.9649708	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	58890304	12A2p6	cell line	sgMsh2	58890304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	138	0	0	NA	exonic	Adamts19	nonsynonymous SNV	Adamts19:NM_175506:exon3:c.T770C:p.L257P	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999826	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999552	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	61839753	12A2p6	cell line	sgMsh2	61839753	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	262	0	0	NA	exonic	Ablim3	nonsynonymous SNV	"Ablim3:NM_198649:exon7:c.A694G:p.T232A,Ablim3:NM_001164491:exon8:c.A694G:p.T232A,Ablim3:NM_001360868:exon8:c.A694G:p.T232A"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	5.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	63041591	12A2p6	cell line	sgMsh2	63041591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	106	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon40:c.A6091G:p.R2031G	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.685212737	2	0.9390777	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	63114983	12A2p6	cell line	sgMsh2	63114983	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	106	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon12:c.G1445T:p.R482M	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.999849	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	63724138	12A2p6	cell line	sgMsh2	63724138	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	266	0	0	NA	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001014981:exon4:c.A284G:p.D95G,Wdr7:NM_001360837:exon4:c.A284G:p.D95G"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	4.06E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	64507819	12A2p6	cell line	sgMsh2	64507819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	225	0	0	NA	exonic	Nars	nonsynonymous SNV	"Nars:NM_001377023:exon7:c.A442G:p.S148G,Nars:NM_001142950:exon8:c.A532G:p.S178G,Nars:NM_001377021:exon8:c.A535G:p.S179G,Nars:NM_001377022:exon8:c.A526G:p.S176G,Nars:NM_027350:exon8:c.A529G:p.S177G"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	4.98E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	64507838	12A2p6	cell line	sgMsh2	64507838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	187	0	0	NA	exonic	Nars	synonymous SNV	"Nars:NM_001377023:exon7:c.A423C:p.V141V,Nars:NM_001142950:exon8:c.A513C:p.V171V,Nars:NM_001377021:exon8:c.A516C:p.V172V,Nars:NM_001377022:exon8:c.A507C:p.V169V,Nars:NM_027350:exon8:c.A510C:p.V170V"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.713180604	2	0.9862123	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	147	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999905	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	67401661	12A2p6	cell line	sgMsh2	67401661	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	200	0	0	NA	exonic	Tubb6	frameshift deletion	Tubb6:NM_026473:exon4:c.629delT:p.I210Tfs*7	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	ATC	frameshift	NA	NA	NA	-1
M2_p20	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	129	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999681	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.997901	TTT	synonymous	NA	NA	NA	NA
M2_p20	chr18	67841400	12A2p6	cell line	sgMsh2	67841400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	52	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon20:c.A3573G:p.S1191S	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9942402	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr18	69465441	12A2p6	cell line	sgMsh2	69465441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	124	0	0	NA	exonic	Tcf4	nonsynonymous SNV	"Tcf4:NM_001083967:exon5:c.A298G:p.I100V,Tcf4:NM_001361126:exon5:c.A298G:p.I100V,Tcf4:NM_001361127:exon5:c.A298G:p.I100V,Tcf4:NM_001361128:exon5:c.A298G:p.I100V,Tcf4:NM_001361129:exon5:c.A298G:p.I100V,Tcf4:NM_013685:exon5:c.A298G:p.I100V"	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999552	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	70522800	12A2p6	cell line	sgMsh2	70522800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	94	0	0	NA	exonic	Poli	nonsynonymous SNV	"Poli:NM_001136090:exon6:c.A673G:p.T225A,Poli:NM_001289515:exon6:c.A298G:p.T100A,Poli:NM_001289516:exon6:c.A604G:p.T202A,Poli:NM_011972:exon6:c.A862G:p.T288A"	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996605	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	71262881	12A2p6	cell line	sgMsh2	71262881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	75	0	0	NA	exonic	Dcc	synonymous SNV	Dcc:NM_007831:exon28:c.T4180C:p.L1394L	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9987762	AAA	synonymous	NA	NA	NA	NA
M2_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	149	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999917	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	73870032	12A2p6	cell line	sgMsh2	73870032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	128	0	0	NA	exonic	Mro	synonymous SNV	"Mro:NM_001360973:exon2:c.A486G:p.L162L,Mro:NM_027741:exon3:c.A75G:p.L25L,Mro:NM_001305882:exon4:c.A75G:p.L25L"	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999658	TAT	synonymous	TCCT	9	TCCTTCCTT	NA
M2_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	135	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999787	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	111	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.815729449	1	0.8875535	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	78185849	12A2p6	cell line	sgMsh2	78185849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	74	0	0	NA	exonic	Slc14a2	nonsynonymous SNV	"Slc14a2:NM_001110274:exon5:c.A494C:p.Y165S,Slc14a2:NM_030683:exon9:c.A908C:p.Y303S,Slc14a2:NM_207651:exon9:c.A908C:p.Y303S"	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9986907	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	80971236	12A2p6	cell line	sgMsh2	80971236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	116	0	0	NA	exonic	Sall3	nonsynonymous SNV	"Sall3:NM_001369133:exon2:c.A3476G:p.K1159R,Sall3:NM_178280:exon3:c.A3260G:p.K1087R"	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999232	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	141	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.997520584	1	0.999984	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	148	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.195180026	NA	1	0.918278294	1	0.9994215	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr18	89207328	12A2p6	cell line	sgMsh2	89207328	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	74	0	0	NA	exonic	Cd226	nonsynonymous SNV	Cd226:NM_178687:exon3:c.T348A:p.N116K	18qE4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	253	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	3717098	12A2p6	cell line	sgMsh2	3717098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	103	0	0	NA	exonic	1810055G02Rik	synonymous SNV	"1810055G02Rik:NM_001358256:exon4:c.C684T:p.P228P,1810055G02Rik:NM_001358257:exon4:c.C684T:p.P228P,1810055G02Rik:NM_001358258:exon4:c.C684T:p.P228P,1810055G02Rik:NM_028077:exon4:c.C684T:p.P228P"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	77	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	71	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	131	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	157	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	30	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M2_p20	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	257	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	470	0	0	NA	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	237	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr19	4872243	12A2p6	cell line	sgMsh2	4872243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	258	0	0	NA	exonic	Actn3	synonymous SNV	Actn3:NM_013456:exon3:c.T375C:p.A125A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	126	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5485111	12A2p6	cell line	sgMsh2	5485111	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	115	0	0	NA	exonic	Mus81	nonsynonymous SNV	Mus81:NM_027877:exon9:c.C889G:p.P297A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5570105	12A2p6	cell line	sgMsh2	5570105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	54	0	0	NA	exonic	Ap5b1	nonsynonymous SNV	"Ap5b1:NM_001033448:exon2:c.A1552G:p.R518G,Ap5b1:NM_001362046:exon3:c.A1552G:p.R518G"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	190	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5673337	12A2p6	cell line	sgMsh2	5673337	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	77	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon24:c.C3829A:p.L1277I	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.199	41	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5702318	12A2p6	cell line	sgMsh2	5702318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	25	0	0	NA	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.C2527T:p.P843S	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	68	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M2_p20	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	57	0	0	NA	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5880446	12A2p6	cell line	sgMsh2	5880446	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_134154:exon4:c.G160T:p.G54C,Slc25a45:NM_001361973:exon5:c.G160T:p.G54C"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	5906575	12A2p6	cell line	sgMsh2	5906575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	84	0	0	NA	exonic	Dpf2	synonymous SNV	"Dpf2:NM_001291078:exon3:c.C250A:p.R84R,Dpf2:NM_011262:exon3:c.C250A:p.R84R"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CGG	synonymous	NA	NA	NA	NA
M2_p20	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	0	0	NA	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	49	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	6068305	12A2p6	cell line	sgMsh2	6068305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	131	0	0	NA	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon10:c.T2159G:p.F720C	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.783100271	1	0.6604874	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Vardict	2	0.2	20	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9255089	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	89	0	0	NA	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.545373403	2	0.9965417	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	123	0	0	NA	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.8201888	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	114	0	0	NA	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	0.9993917	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	71	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9983971	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	7427840	12A2p6	cell line	sgMsh2	7427840	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	261	0	0	NA	exonic	Rtn3	frameshift deletion	"Rtn3:NM_053076:exon7:c.704delA:p.K235Rfs*27,Rtn3:NM_001003933:exon8:c.2828delA:p.K943Rfs*27,Rtn3:NM_001271487:exon8:c.761delA:p.K254Rfs*27,Rtn3:NM_001003934:exon9:c.2885delA:p.K962Rfs*27,Rtn3:NM_001271486:exon9:c.1922delA:p.K641Rfs*27"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr19	7879416	12A2p6	cell line	sgMsh2	7879416	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	302	0	0	NA	exonic	Slc22a27	nonsynonymous SNV	"Slc22a27:NM_001361980:exon6:c.T932A:p.I311N,Slc22a27:NM_134256:exon8:c.T1256A:p.I419N"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.680551426	2	0.9999878	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	7880252	12A2p6	cell line	sgMsh2	7880252	G	T	SNV	Mutect2;MuSe;Vardict	3	0.056	594	0	0	NA	exonic	Slc22a27	nonsynonymous SNV	"Slc22a27:NM_001361980:exon5:c.C655A:p.L219I,Slc22a27:NM_134256:exon7:c.C979A:p.L327I"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.261033424	3	1	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	8162725	12A2p6	cell line	sgMsh2	8162725	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	515	0	0	NA	exonic	Slc22a29	nonsynonymous SNV	"Slc22a29:NM_001347426:exon8:c.T1315A:p.L439M,Slc22a29:NM_172776:exon8:c.T1315A:p.L439M"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.363582269	3	3.95E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	459	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.9912511	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Vardict	2	0.264	41	0	0	NA	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr19	8895332	12A2p6	cell line	sgMsh2	8895332	G	A	SNV	Mutect2;Vardict	2	0.104	128	0	0	NA	exonic	Ints5	synonymous SNV	Ints5:NM_176843:exon2:c.G654A:p.Q218Q	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.484776359	2	0.9886234	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr19	8914562	12A2p6	cell line	sgMsh2	8914562	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	443	0	0	NA	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon19:c.C2266T:p.P756S,Ganab:NM_008060:exon20:c.C2332T:p.P778S"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.759793716	2	0.9946313	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	91	0	0	NA	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9995843	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	9016246	12A2p6	cell line	sgMsh2	9016246	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	239	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.C14893T:p.P4965S	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.8026975	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.332	16	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9379943	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	326	0	0	NA	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.657244871	2	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	229	0	0	NA	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.876326494	1	0.999336	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10442939	12A2p6	cell line	sgMsh2	10442939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	131	0	0	NA	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon6:c.T734C:p.V245A,Syt7:NM_173067:exon7:c.T866C:p.V289A,Syt7:NM_173068:exon8:c.T1226C:p.V409A,Syt7:NM_001373944:exon9:c.T1358C:p.V453A"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.498760292	2	0.9963538	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10481287	12A2p6	cell line	sgMsh2	10481287	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	46	0	0	NA	exonic	Ppp1r32	nonsynonymous SNV	"Ppp1r32:NM_001368184:exon4:c.G378T:p.K126N,Ppp1r32:NM_133689:exon4:c.G378T:p.K126N"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9913869	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	58	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9961519	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10797897	12A2p6	cell line	sgMsh2	10797897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	101	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon5:c.C860T:p.T287M,Cd6:NM_009852:exon5:c.C860T:p.T287M"	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9997884	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	10979260	12A2p6	cell line	sgMsh2	10979260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	93	0	0	NA	exonic	Ms4a15	synonymous SNV	Ms4a15:NM_001034898:exon7:c.A687G:p.P229P	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9996368	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	211	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.7839546	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	188	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.708519293	2	0.009906607	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr19	11302068	12A2p6	cell line	sgMsh2	11302068	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	256	0	0	NA	exonic	Ms4a14	nonsynonymous SNV	Ms4a14:NM_001377045:exon6:c.C3125T:p.S1042F	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.601309137	2	0.9999999	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	12298424	12A2p6	cell line	sgMsh2	12298424	T	C	SNV	Mutect2;MuSe;Vardict	3	0.125	668	0	0	NA	exonic	Olfr1436	nonsynonymous SNV	Olfr1436:NM_146687:exon1:c.A707G:p.K236R	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	1	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	12648036	12A2p6	cell line	sgMsh2	12648036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	277	0	0	NA	exonic	Glyat	nonsynonymous SNV	Glyat:NM_145935:exon4:c.A223G:p.T75A	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	2.46E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	534	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.9994425	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	623	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.773777649	2	0.9932945	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	13063854	12A2p6	cell line	sgMsh2	13063854	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	983	0	0	NA	exonic	Olfr1454	nonsynonymous SNV	Olfr1454:NM_146692:exon1:c.A442G:p.I148V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.107210156	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13146291	12A2p6	cell line	sgMsh2	13146291	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	1205	0	0	NA	exonic	Olfr1459	nonsynonymous SNV	Olfr1459:NM_146689:exon1:c.G367A:p.A123T	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.908955672	1	1	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	367	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	NA	NA	CTA	frameshift	NA	NA	NA	-1
M2_p20	chr19	13235020	12A2p6	cell line	sgMsh2	13235020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	406	0	0	NA	exonic	Olfr1463	nonsynonymous SNV	Olfr1463:NM_001011840:exon1:c.A769G:p.I257V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	1.24E-09	AAT	nonsynonymous	AAC	8	AACAACAA	NA
M2_p20	chr19	13479476	12A2p6	cell line	sgMsh2	13479476	A	G	SNV	Mutect2;MuSe;Vardict	3	0.07	724	0	0	NA	exonic	Olfr1475	nonsynonymous SNV	Olfr1475:NM_146301:exon1:c.T721C:p.S241P	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.32629178	3	1	GAT	nonsynonymous	GATGA	14	GATGAGATGAGATG	NA
M2_p20	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	813	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M2_p20	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	968	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	357	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.960230095	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	544	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	2.40E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13781062	12A2p6	cell line	sgMsh2	13781062	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	321	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.C449A:p.P150Q	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.703857982	2	0.999928	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13781469	12A2p6	cell line	sgMsh2	13781469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	289	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.A856G:p.M286V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.769116338	2	0.8705163	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13781532	12A2p6	cell line	sgMsh2	13781532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	217	0	0	NA	exonic	Olfr1496	nonsynonymous SNV	Olfr1496:NM_146989:exon1:c.A919G:p.I307V	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13794877	12A2p6	cell line	sgMsh2	13794877	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.027	281	0	0	NA	exonic	Olfr1497	nonsynonymous SNV	Olfr1497:NM_146741:exon1:c.C733A:p.L245I	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.125855401	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	13887340	12A2p6	cell line	sgMsh2	13887340	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	167	0	0	NA	exonic	Olfr1504	nonsynonymous SNV	Olfr1504:NM_146634:exon1:c.G869T:p.S290I	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9981988	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	15961054	12A2p6	cell line	sgMsh2	15961054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	156	0	0	NA	exonic	Cep78	nonsynonymous SNV	Cep78:NM_198019:exon13:c.T1529C:p.L510P	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.428840625	2	0.5735472	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	222	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	54	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	9.80E-09	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	17020585	12A2p6	cell line	sgMsh2	17020585	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	199	0	0	NA	exonic	Prune2	nonsynonymous SNV	Prune2:NM_181348:exon6:c.A685C:p.K229Q	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.302985224	3	0.9999993	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	266	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.9999626	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	20824126	12A2p6	cell line	sgMsh2	20824126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	71	0	0	NA	exonic	Tmc1	nonsynonymous SNV	Tmc1:NM_028953:exon14:c.A1409G:p.K470R	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.65258356	2	0.8900444	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	21684163	12A2p6	cell line	sgMsh2	21684163	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	191	0	0	NA	exonic	Abhd17b	nonsynonymous SNV	Abhd17b:NM_146096:exon4:c.T713A:p.I238N	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.689874049	2	0.9973623	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	76	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.591986515	2	0.9805436	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	22897513	12A2p6	cell line	sgMsh2	22897513	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	282	0	0	NA	exonic	Trpm3	stopgain	"Trpm3:NM_001035240:exon13:c.T1668G:p.Y556X,Trpm3:NM_001035241:exon13:c.T1668G:p.Y556X,Trpm3:NM_001362490:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362491:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362498:exon13:c.T1608G:p.Y536X,Trpm3:NM_001362500:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362503:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362507:exon13:c.T1608G:p.Y536X,Trpm3:NM_177341:exon13:c.T1662G:p.Y554X,Trpm3:NM_001362487:exon14:c.T1737G:p.Y579X,Trpm3:NM_001362488:exon14:c.T1737G:p.Y579X,Trpm3:NM_001362499:exon14:c.T1683G:p.Y561X"	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.629277004	2	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	23231947	12A2p6	cell line	sgMsh2	23231947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	95	0	0	NA	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252684:exon14:c.A1852G:p.K618E,Smc5:NM_001252685:exon14:c.A1624G:p.K542E,Smc5:NM_153808:exon14:c.A1852G:p.K618E"	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.480115047	2	0.960752	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	23616535	12A2p6	cell line	sgMsh2	23616535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	528	0	0	NA	exonic	1700028P14Rik	nonsynonymous SNV	1700028P14Rik:NM_026188:exon2:c.T242C:p.F81S	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.825052072	1	0.9953759	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	25193454	12A2p6	cell line	sgMsh2	25193454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	360	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon46:c.G6010A:p.D2004N	19qB	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.741148471	2	0.9980858	TGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	25675615	12A2p6	cell line	sgMsh2	25675615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	162	0	0	NA	exonic	Dmrt2	nonsynonymous SNV	Dmrt2:NM_145831:exon3:c.T590C:p.V197A	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.53138947	2	0.9999463	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	27418858	12A2p6	cell line	sgMsh2	27418858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	188	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon10:c.G972A:p.K324K	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.400872758	3	0.9417886	GCT	synonymous	GAGT	9	GAGTGAGTG	NA
M2_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	346	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.927600917	1	0.9999999	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr19	28540202	12A2p6	cell line	sgMsh2	28540202	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	157	0	0	NA	exonic	Glis3	synonymous SNV	Glis3:NM_175459:exon3:c.A595C:p.R199R	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.7399081	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	291	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.916745	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	161	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999963	TCG	synonymous	NA	NA	NA	NA
M2_p20	chr19	31083214	12A2p6	cell line	sgMsh2	31083214	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	283	0	0	NA	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.A149T:p.D50V	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.65258356	2	0.9999982	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	82	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9229335	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	476	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.643260937	2	1.02E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	132	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.8128679	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	573	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	478	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.689874049	2	3.12E-08	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	486	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.680551426	2	5.59E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	192	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M2_p20	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	106	0	0	NA	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9901323	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	175	0	0	NA	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999986	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	129	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999681	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	345	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	37701052	12A2p6	cell line	sgMsh2	37701052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	184	0	0	NA	exonic	Cyp26a1	nonsynonymous SNV	Cyp26a1:NM_007811:exon7:c.T1195C:p.C399R	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.825052072	1	0.9497784	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	37905361	12A2p6	cell line	sgMsh2	37905361	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	243	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon49:c.T5576G:p.I1859S,Myof:NM_001302140:exon50:c.T5615G:p.I1872S"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.158484579	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	37949713	12A2p6	cell line	sgMsh2	37949713	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.09	125	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon25:c.A2552G:p.Y851C,Myof:NM_001302140:exon26:c.A2591G:p.Y864C"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.419518003	3	0.5803658	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38057929	12A2p6	cell line	sgMsh2	38057929	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	99	0	0	NA	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon2:c.A129C:p.E43D,Cep55:NM_001164362:exon3:c.A129C:p.E43D,Cep55:NM_001360663:exon3:c.A129C:p.E43D,Cep55:NM_028760:exon3:c.A129C:p.E43D"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9975459	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38071878	12A2p6	cell line	sgMsh2	38071878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	208	0	0	NA	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon8:c.G1176T:p.Q392H,Cep55:NM_001164362:exon9:c.G1176T:p.Q392H,Cep55:NM_001360663:exon9:c.G1176T:p.Q392H,Cep55:NM_028760:exon9:c.G1176T:p.Q392H"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.792422894	1	0.6821235	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38133234	12A2p6	cell line	sgMsh2	38133234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	154	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon1:c.A289G:p.S97G,Pde6c:NM_033614:exon1:c.A289G:p.S97G"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.466131114	2	0.973576	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	322	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.997520584	1	1.09E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	244	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.591986515	2	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	38965451	12A2p6	cell line	sgMsh2	38965451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	261	0	0	NA	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon21:c.T2339A:p.L780Q	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.554696026	2	6.37E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	39401783	12A2p6	cell line	sgMsh2	39401783	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.245	376	0	0	NA	exonic	Cyp2c38	synonymous SNV	Cyp2c38:NM_010002:exon7:c.A972G:p.Q324Q	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr19	39513332	12A2p6	cell line	sgMsh2	39513332	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.133	275	0	0	NA	exonic	Cyp2c39	nonsynonymous SNV	"Cyp2c39:NM_001373937:exon2:c.C328A:p.L110I,Cyp2c39:NM_010003:exon2:c.C328A:p.L110I"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	122	0	0	NA	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.98353665	1	0.9998974	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	40912047	12A2p6	cell line	sgMsh2	40912047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	591	0	0	NA	exonic	Zfp518a	nonsynonymous SNV	Zfp518a:NM_028319:exon5:c.A419G:p.H140R	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.568679959	2	1	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	296	0	0	NA	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1.40E-09	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	266	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.848358627	1	0.9965379	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr19	41874250	12A2p6	cell line	sgMsh2	41874250	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	125	0	0	NA	exonic	Rrp12	nonsynonymous SNV	Rrp12:NM_199447:exon23:c.G2678C:p.G893A	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.978875339	1	0.9998958	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	0	0	NA	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9997884	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	62	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.699196671	2	0.6501794	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	67	0	0	NA	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.792422894	1	0.7952629	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	44155585	12A2p6	cell line	sgMsh2	44155585	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	209	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon6:c.T1048G:p.F350V	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.727164538	2	0.9812023	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	44536201	12A2p6	cell line	sgMsh2	44536201	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	173	0	0	NA	exonic	Sec31b	nonsynonymous SNV	Sec31b:NM_001033343:exon4:c.G256A:p.G86R	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.820390761	1	0.9297774	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	44967024	12A2p6	cell line	sgMsh2	44967024	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	223	0	0	NA	exonic	Slf2	synonymous SNV	"Slf2:NM_001081225:exon12:c.A2682C:p.P894P,Slf2:NM_172638:exon12:c.A747C:p.P249P"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9808122	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	640	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	45001583	12A2p6	cell line	sgMsh2	45001583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	142	0	0	NA	exonic	Sema4g	nonsynonymous SNV	Sema4g:NM_011976:exon15:c.G2100T:p.K700N	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999867	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	125	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.647922248	2	0.9941214	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	123	0	0	NA	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.94158485	1	0.9994264	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr19	45024867	12A2p6	cell line	sgMsh2	45024867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	39	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon4:c.A1220G:p.Q407R,Lzts2:NM_001130526:exon4:c.A1220G:p.Q407R,Lzts2:NM_145503:exon4:c.A1220G:p.Q407R"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	1	0.9862522	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	45515913	12A2p6	cell line	sgMsh2	45515913	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	526	0	0	NA	exonic	Btrc	nonsynonymous SNV	"Btrc:NM_001286466:exon9:c.G487T:p.A163S,Btrc:NM_001360127:exon9:c.G1075T:p.A359S,Btrc:NM_009771:exon9:c.G1045T:p.A349S,Btrc:NM_001037758:exon10:c.G1153T:p.A385S,Btrc:NM_001286465:exon10:c.G1153T:p.A385S,Btrc:NM_001360122:exon10:c.G1117T:p.A373S,Btrc:NM_001360126:exon10:c.G1087T:p.A363S,Btrc:NM_001360120:exon11:c.G1195T:p.A399S,Btrc:NM_001360124:exon12:c.G1099T:p.A367S"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9991357	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	45557858	12A2p6	cell line	sgMsh2	45557858	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	116	0	0	NA	exonic	Poll	nonsynonymous SNV	"Poll:NM_001330507:exon5:c.A742G:p.T248A,Poll:NM_020032:exon5:c.A742G:p.T248A,Poll:NM_001330506:exon6:c.A742G:p.T248A"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.382227513	3	0.9400473	GTT	nonsynonymous	TAGT	9	TAGTTAGTT	NA
M2_p20	chr19	45975108	12A2p6	cell line	sgMsh2	45975108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	220	0	0	NA	exonic	Armh3	synonymous SNV	Armh3:NM_198296:exon4:c.T165C:p.N55N	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.699196671	2	0.9983014	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	58	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.610631759	2	0.09524757	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	46264839	12A2p6	cell line	sgMsh2	46264839	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	299	0	0	NA	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon14:c.A1549T:p.M517L	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.638599626	2	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	46331815	12A2p6	cell line	sgMsh2	46331815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	179	0	0	NA	exonic	Cuedc2	synonymous SNV	"Cuedc2:NM_001164291:exon4:c.T222C:p.G74G,Cuedc2:NM_001164292:exon4:c.T222C:p.G74G,Cuedc2:NM_001164293:exon4:c.T222C:p.G74G,Cuedc2:NM_001164294:exon4:c.T222C:p.G74G,Cuedc2:NM_001164295:exon4:c.T222C:p.G74G,Cuedc2:NM_001164290:exon5:c.T222C:p.G74G,Cuedc2:NM_024192:exon5:c.T222C:p.G74G"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999989	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	68	0	0	NA	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.680551426	2	0.7818749	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	170	0	0	NA	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.8827869	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	388	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9964326	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	158	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.85768125	1	0.9894179	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	277	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.964891406	1	4.30E-08	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	47948202	12A2p6	cell line	sgMsh2	47948202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	240	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon4:c.T527C:p.L176P	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.666567493	2	0.9999452	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	107	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9904023	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	48603871	12A2p6	cell line	sgMsh2	48603871	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	701	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon5:c.G974A:p.R325Q	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.98353665	1	1	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	237	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	0.9999999	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr19	50152817	12A2p6	cell line	sgMsh2	50152817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	149	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	Sorcs1:NM_001360457:exon26:c.C3475T:p.P1159S	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999917	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	50168562	12A2p6	cell line	sgMsh2	50168562	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	180	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon24:c.G3222A:p.K1074K,Sorcs1:NM_001290356:exon24:c.G3222A:p.K1074K,Sorcs1:NM_001360457:exon24:c.G3222A:p.K1074K,Sorcs1:NM_021377:exon24:c.G3222A:p.K1074K"	19qD1	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.862342561	1	0.9946836	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr19	53832677	12A2p6	cell line	sgMsh2	53832677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	152	0	0	NA	exonic	Rbm20	nonsynonymous SNV	Rbm20:NM_001170847:exon6:c.T1562C:p.V521A	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.703857982	2	0.9747643	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	212	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999992	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	56320979	12A2p6	cell line	sgMsh2	56320979	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	91	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon39:c.T4637C:p.V1546A,Nrap:NM_198059:exon40:c.T4880C:p.V1627A,Nrap:NM_008733:exon41:c.T4985C:p.V1662A"	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.480115047	2	0.9562708	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	56336125	12A2p6	cell line	sgMsh2	56336125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	164	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon32:c.A3476G:p.N1159S,Nrap:NM_198059:exon33:c.A3719G:p.N1240S,Nrap:NM_008733:exon34:c.A3824G:p.N1275S"	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.936923539	1	0.9998927	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	138	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.433501936	2	7.15E-08	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	56436394	12A2p6	cell line	sgMsh2	56436394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	215	0	0	NA	exonic	Casp7	nonsynonymous SNV	Casp7:NM_007611:exon5:c.T544C:p.F182L	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9998337	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
M2_p20	chr19	56800176	12A2p6	cell line	sgMsh2	56800176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	336	0	0	NA	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon10:c.A1600G:p.T534A	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.913616983	1	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	127	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.839036005	1	0.958935	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M2_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	248	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9999437	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.371	59	0	0	NA	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr19	60467939	12A2p6	cell line	sgMsh2	60467939	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	197	0	0	NA	exonic	Prlhr	nonsynonymous SNV	Prlhr:NM_201615:exon1:c.T188G:p.I63S	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.424179314	3	0.5742542	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	60772834	12A2p6	cell line	sgMsh2	60772834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	222	0	0	NA	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon12:c.T1835C:p.L612P	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.647922248	2	0.9999691	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	60814746	12A2p6	cell line	sgMsh2	60814746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	357	0	0	NA	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001167829:exon2:c.T190C:p.Y64H,Dennd10:NM_001360620:exon2:c.T271C:p.Y91H,Dennd10:NM_026437:exon2:c.T190C:p.Y64H"	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	313	0	0	NA	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	5	3	2	0.9	4.195180026	NA	1	0.815729449	1	0.9449656	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M2_p20	chr2	5299004	12A2p6	cell line	sgMsh2	5299004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	43	0	0	NA	exonic	Camk1d	synonymous SNV	"Camk1d:NM_001290376:exon11:c.A1113G:p.T371T,Camk1d:NM_177343:exon11:c.A1137G:p.T379T"	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.894971739	1	0.9517609	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	219	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.470792425	2	0.995867	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	372	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	13578619	12A2p6	cell line	sgMsh2	13578619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	151	0	0	NA	exonic	Vim	nonsynonymous SNV	Vim:NM_011701:exon4:c.G751A:p.E251K	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.769116338	2	0.5530562	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	13578750	12A2p6	cell line	sgMsh2	13578750	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	76	0	0	NA	exonic	Vim	synonymous SNV	Vim:NM_011701:exon4:c.G882A:p.K294K	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.335614402	3	0.9747558	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr2	13580106	12A2p6	cell line	sgMsh2	13580106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	198	0	0	NA	exonic	Vim	nonsynonymous SNV	Vim:NM_011701:exon6:c.A1097T:p.Q366L	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.750471093	2	0.8875078	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	13580659	12A2p6	cell line	sgMsh2	13580659	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	270	0	0	NA	exonic	Vim	nonsynonymous SNV	Vim:NM_011701:exon7:c.A1249C:p.T417P	2qA1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.73648716	2	0.9911433	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	19235585	12A2p6	cell line	sgMsh2	19235585	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	124	0	0	NA	exonic	Armc3	nonsynonymous SNV	"Armc3:NM_001081083:exon3:c.A152T:p.K51M,Armc3:NM_001271563:exon3:c.A152T:p.K51M,Armc3:NM_001271564:exon3:c.A152T:p.K51M,Armc3:NM_001271565:exon3:c.A152T:p.K51M"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.344937024	3	0.9964703	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	67	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.997901	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	22297602	12A2p6	cell line	sgMsh2	22297602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	191	0	0	NA	exonic	Myo3a	synonymous SNV	Myo3a:NM_148413:exon9:c.A861G:p.S287S	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999995	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	24076012	12A2p6	cell line	sgMsh2	24076012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	211	0	0	NA	exonic	Tbpl2	nonsynonymous SNV	"Tbpl2:NM_001289689:exon6:c.T965C:p.V322A,Tbpl2:NM_199059:exon6:c.T968C:p.V323A"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	99	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.484776359	2	0.9727451	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.558	97	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9997228	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	75	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9987762	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	25264468	12A2p6	cell line	sgMsh2	25264468	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	153	0	0	NA	exonic	Tprn	nonsynonymous SNV	Tprn:NM_175286:exon1:c.C1781A:p.P594H	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999937	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	44	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9901535	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	26281154	12A2p6	cell line	sgMsh2	26281154	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	37	0	0	NA	exonic	Ccdc187	synonymous SNV	Ccdc187:NM_177841:exon5:c.T1311G:p.P437P	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.984295	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	26981175	12A2p6	cell line	sgMsh2	26981175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	52	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon7:c.T799C:p.W267R,Adamts13:NM_001290463:exon7:c.T799C:p.W267R,Adamts13:NM_001290464:exon7:c.T799C:p.W267R,Adamts13:NM_001290465:exon7:c.T799C:p.W267R"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9942402	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	26993038	12A2p6	cell line	sgMsh2	26993038	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	54	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001290465:exon19:c.A2572G:p.R858G,Adamts13:NM_001001322:exon20:c.A2599G:p.R867G,Adamts13:NM_001290463:exon20:c.A2515G:p.R839G,Adamts13:NM_001290464:exon20:c.A2599G:p.R867G"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.643260937	2	0.7972752	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	131	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999721	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	102	0	0	NA	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9998022	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M2_p20	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	67	0	0	NA	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.997901	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	29940166	12A2p6	cell line	sgMsh2	29940166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.633	72	0	0	NA	exonic	Gle1	nonsynonymous SNV	Gle1:NM_028923:exon6:c.G733A:p.V245I	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9985017	GGT	nonsynonymous	AGGTC	10	AGGTCAGGTC	NA
M2_p20	chr2	30025552	12A2p6	cell line	sgMsh2	30025552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	263	0	0	NA	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177668:exon46:c.A5963C:p.D1988A,Sptan1:NM_001369325:exon46:c.A6008C:p.D2003A,Sptan1:NM_001177667:exon47:c.A6023C:p.D2008A,Sptan1:NM_001309460:exon47:c.A6023C:p.D2008A"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.344937024	3	0.9999966	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	94	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9996605	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	55	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.950907472	1	0.9881136	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	290	0	0	NA	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.498760292	2	0.9999922	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	31356348	12A2p6	cell line	sgMsh2	31356348	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	17	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon15:c.T2328G:p.S776S	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9418551	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	31779053	12A2p6	cell line	sgMsh2	31779053	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	208	0	0	NA	exonic	Abl1	nonsynonymous SNV	"Abl1:NM_001112703:exon3:c.A443G:p.H148R,Abl1:NM_001283045:exon3:c.A371G:p.H124R,Abl1:NM_009594:exon3:c.A386G:p.H129R,Abl1:NM_001283046:exon4:c.A368G:p.H123R"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.400872758	3	0.9584485	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	246	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.28E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	137	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.433501936	2	8.12E-08	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	61	0	0	NA	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9968555	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	56	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9955978	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	33015201	12A2p6	cell line	sgMsh2	33015201	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	271	0	0	NA	exonic	Garnl3	synonymous SNV	"Garnl3:NM_001355202:exon17:c.G909T:p.G303G,Garnl3:NM_178888:exon17:c.G1350T:p.G450G,Garnl3:NM_001355200:exon18:c.G1605T:p.G535G,Garnl3:NM_001355201:exon18:c.G1485T:p.G495G"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	3.18E-09	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr2	34224567	12A2p6	cell line	sgMsh2	34224567	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	82	0	0	NA	exonic	Pbx3	synonymous SNV	"Pbx3:NM_001290576:exon3:c.A354G:p.E118E,Pbx3:NM_016768:exon3:c.A354G:p.E118E"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9992369	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	60	0	0	NA	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.619954382	2	0.8986934	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	35191539	12A2p6	cell line	sgMsh2	35191539	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	223	0	0	NA	exonic	Rab14	nonsynonymous SNV	Rab14:NM_026697:exon3:c.T79G:p.L27V	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.629277004	2	0.999993	AAG	nonsynonymous	AAGC	11	AAGCAAGCAAG	NA
M2_p20	chr2	36735050	12A2p6	cell line	sgMsh2	36735050	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	624	0	0	NA	exonic	Olfr347	nonsynonymous SNV	Olfr347:NM_146943:exon1:c.C728T:p.S243F	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	36938043	12A2p6	cell line	sgMsh2	36938043	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	136	0	0	NA	exonic	Olfr356	nonsynonymous SNV	Olfr356:NM_146624:exon1:c.T923G:p.I308S	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999801	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	179	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999989	AAC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	227	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	4.36E-08	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.436	272	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M2_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	47	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9919449	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	123	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999521	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.15	124	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.699196671	2	0.9467846	GAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	43629049	12A2p6	cell line	sgMsh2	43629049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	156	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon9:c.A829G:p.K277E,Kynu:NM_001289594:exon9:c.A829G:p.K277E,Kynu:NM_027552:exon9:c.A829G:p.K277E"	2qB	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999948	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	49251359	12A2p6	cell line	sgMsh2	49251359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	56	0	0	NA	exonic	Mbd5	synonymous SNV	"Mbd5:NM_001290656:exon3:c.A333G:p.T111T,Mbd5:NM_029924:exon10:c.A333G:p.T111T"	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.755132405	1	0.6640519	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	52116254	12A2p6	cell line	sgMsh2	52116254	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	266	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon31:c.C6472T:p.R2158C,Rif1:NM_001355415:exon31:c.C6451T:p.R2151C,Rif1:NM_175238:exon31:c.C6472T:p.R2158C"	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.200436379	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	52199485	12A2p6	cell line	sgMsh2	52199485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	142	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon109:c.C16203T:p.H5401H	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999867	TGT	synonymous	NA	NA	NA	NA
M2_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	362	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	168	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999977	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	59969380	12A2p6	cell line	sgMsh2	59969380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	253	0	0	NA	exonic	Baz2b	synonymous SNV	Baz2b:NM_001001182:exon7:c.T594C:p.S198S	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	8.36E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	60257166	12A2p6	cell line	sgMsh2	60257166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	365	0	0	NA	exonic	Cd302	synonymous SNV	"Cd302:NM_001290660:exon4:c.A327G:p.T109T,Cd302:NM_025422:exon4:c.A327G:p.T109T"	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.61529307	2	1.22E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr2	60428573	12A2p6	cell line	sgMsh2	60428573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	160	0	0	NA	exonic	Pla2r1	nonsynonymous SNV	Pla2r1:NM_008867:exon24:c.A3470G:p.Q1157R	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.391550136	3	0.9587561	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	60455122	12A2p6	cell line	sgMsh2	60455122	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	218	0	0	NA	exonic	Pla2r1	nonsynonymous SNV	Pla2r1:NM_008867:exon13:c.A2147G:p.N716S	2qC1.1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.913616983	1	0.9999475	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	365	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.363582269	3	0.9999989	ACT	synonymous	NA	NA	NA	NA
M2_p20	chr2	65133681	12A2p6	cell line	sgMsh2	65133681	T	C	SNV	Mutect2;Vardict	2	0.039	235	0	0	NA	exonic	Cobll1	nonsynonymous SNV	"Cobll1:NM_027225:exon4:c.A595G:p.T199A,Cobll1:NM_177025:exon4:c.A595G:p.T199A,Cobll1:NM_001363076:exon5:c.A691G:p.T231A,Cobll1:NM_001363077:exon5:c.A595G:p.T199A"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.181791134	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	208	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.321630469	3	0.9999967	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Vardict	2	0.062	210	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.289001291	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M2_p20	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	179	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.363582269	3	0.9984502	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.504	334	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr2	67511630	12A2p6	cell line	sgMsh2	67511630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	198	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A4214C:p.N1405T,Xirp2:NM_001083919:exon7:c.A4214C:p.N1405T"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.442824558	2	0.8608607	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	343	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.24704949	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	69479160	12A2p6	cell line	sgMsh2	69479160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	208	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon44:c.T8394G:p.S2798R	2qC2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	69509218	12A2p6	cell line	sgMsh2	69509218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	306	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon22:c.C3348A:p.T1116T	2qC2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.21E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr2	70523356	12A2p6	cell line	sgMsh2	70523356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	99	0	0	NA	exonic	Erich2	nonsynonymous SNV	Erich2:NM_025744:exon7:c.A705C:p.K235N	2qC2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.885649116	1	0.9880199	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	71228664	12A2p6	cell line	sgMsh2	71228664	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	169	0	0	NA	exonic	Dync1i2	nonsynonymous SNV	"Dync1i2:NM_001198874:exon4:c.T291A:p.D97E,Dync1i2:NM_001198876:exon4:c.T291A:p.D97E,Dync1i2:NM_010064:exon4:c.T291A:p.D97E,Dync1i2:NM_001198875:exon5:c.T309A:p.D103E,Dync1i2:NM_001347173:exon5:c.T309A:p.D103E,Dync1i2:NM_001198872:exon6:c.T360A:p.D120E,Dync1i2:NM_001198873:exon6:c.T345A:p.D115E,Dync1i2:NM_001198877:exon6:c.T360A:p.D120E,Dync1i2:NM_001198878:exon6:c.T345A:p.D115E"	2qC2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.73648716	2	0.9121235	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	71841276	12A2p6	cell line	sgMsh2	71841276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	215	0	0	NA	exonic	Itga6	nonsynonymous SNV	"Itga6:NM_001277970:exon17:c.A2272G:p.T758A,Itga6:NM_008397:exon17:c.A2272G:p.T758A"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.419518003	3	0.7219164	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	73199427	12A2p6	cell line	sgMsh2	73199427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	94	0	0	NA	exonic	Ola1	nonsynonymous SNV	"Ola1:NM_025942:exon4:c.C347T:p.A116V,Ola1:NM_030091:exon4:c.C347T:p.A116V"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.666567493	2	0.9451058	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	74568988	12A2p6	cell line	sgMsh2	74568988	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	109	0	0	NA	exonic	Lnpk	nonsynonymous SNV	"Lnpk:NM_001110209:exon4:c.T210A:p.F70L,Lnpk:NM_027133:exon4:c.T210A:p.F70L"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.564018648	2	0.9992623	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	74569043	12A2p6	cell line	sgMsh2	74569043	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	exonic	Lnpk	nonsynonymous SNV	"Lnpk:NM_001110209:exon4:c.T155A:p.I52N,Lnpk:NM_027133:exon4:c.T155A:p.I52N"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.591986515	2	0.9996818	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	22	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.957888	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	75676073	12A2p6	cell line	sgMsh2	75676073	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	229	0	0	NA	exonic	Nfe2l2	nonsynonymous SNV	Nfe2l2:NM_010902:exon5:c.G1682A:p.R561H	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.191113757	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	107	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.321630469	3	0.9980345	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76705729	12A2p6	cell line	sgMsh2	76705729	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	156	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon191:c.A80303C:p.K26768T,Ttn:NM_011652:exon312:c.A100046C:p.K33349T,Ttn:NM_001385708:exon348:c.A106034C:p.K35345T"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9999948	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76728473	12A2p6	cell line	sgMsh2	76728473	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	177	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon164:c.G64082A:p.R21361H,Ttn:NM_011652:exon285:c.G83825A:p.R27942H,Ttn:NM_001385708:exon322:c.G89657A:p.R29886H"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.316969157	3	0.9999855	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76742229	12A2p6	cell line	sgMsh2	76742229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	235	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.T53338C:p.F17780L,Ttn:NM_011652:exon275:c.T73081C:p.F24361L,Ttn:NM_001385708:exon312:c.T78913C:p.F26305L"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.58E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76753846	12A2p6	cell line	sgMsh2	76753846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	149	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon152:c.T41936C:p.L13979P,Ttn:NM_011652:exon273:c.T61679C:p.L20560P,Ttn:NM_001385708:exon310:c.T67511C:p.L22504P"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999917	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76755704	12A2p6	cell line	sgMsh2	76755704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	201	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon148:c.T40701C:p.G13567G,Ttn:NM_011652:exon269:c.T60444C:p.G20148G,Ttn:NM_001385708:exon306:c.T66276C:p.G22092G"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999998	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	76758980	12A2p6	cell line	sgMsh2	76758980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	160	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon143:c.T38857C:p.C12953R,Ttn:NM_011652:exon264:c.T58600C:p.C19534R,Ttn:NM_001385708:exon301:c.T64432C:p.C21478R"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.801745516	1	0.8147449	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	76907588	12A2p6	cell line	sgMsh2	76907588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	354	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon45:c.C12606T:p.D4202D,Ttn:NM_001385708:exon47:c.C13119T:p.D4373D"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.344937024	3	3.73E-08	GGT	synonymous	NA	NA	NA	NA
M2_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	238	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.13E-08	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	318	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.09E-09	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	80570182	12A2p6	cell line	sgMsh2	80570182	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	270	0	0	NA	exonic	Nckap1	nonsynonymous SNV	"Nckap1:NM_001355411:exon2:c.C156A:p.N52K,Nckap1:NM_016965:exon2:c.C156A:p.N52K,Nckap1:NM_001290745:exon3:c.C174A:p.N58K,Nckap1:NM_001355410:exon3:c.C174A:p.N58K"	2qC3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.647922248	2	0.9999977	GGT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	87	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9994555	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr2	82258084	12A2p6	cell line	sgMsh2	82258084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	210	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon4:c.T2256C:p.S752S	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr2	82946941	12A2p6	cell line	sgMsh2	82946941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	173	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon3:c.A311G:p.H104R	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.512744225	2	0.9998208	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	82950940	12A2p6	cell line	sgMsh2	82950940	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	230	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon6:c.G677A:p.R226H	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.28433998	3	6.81E-09	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	125	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999582	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	615	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.16314589	3	1	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M2_p20	chr2	83915385	12A2p6	cell line	sgMsh2	83915385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	405	0	0	NA	exonic	Zswim2	synonymous SNV	Zswim2:NM_027964:exon9:c.T1708C:p.L570L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	214	0	0	NA	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.330953091	3	0.9999929	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	85353068	12A2p6	cell line	sgMsh2	85353068	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.486	268	0	0	NA	exonic	Olfr988	frameshift deletion	Olfr988:NM_001011534:exon1:c.857delA:p.N286Tfs*2	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr2	85414571	12A2p6	cell line	sgMsh2	85414571	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	391	0	0	NA	exonic	Olfr993	nonsynonymous SNV	Olfr993:NM_146435:exon1:c.A307G:p.I103V	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.223742935	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	85690223	12A2p6	cell line	sgMsh2	85690223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	404	0	0	NA	exonic	Olfr1008	nonsynonymous SNV	Olfr1008:NM_146866:exon1:c.A793G:p.T265A	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	85841377	12A2p6	cell line	sgMsh2	85841377	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	213	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A413C:p.K138T	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	3	8.83E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	85869531	12A2p6	cell line	sgMsh2	85869531	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.479	55	0	0	NA	exonic	Olfr1022	frameshift deletion	Olfr1022:NM_146589:exon1:c.938delT:p.L314Wfs*2	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M2_p20	chr2	85923622	12A2p6	cell line	sgMsh2	85923622	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	316	0	0	NA	exonic	Olfr1026	nonsynonymous SNV	Olfr1026:NM_146584:exon1:c.T353G:p.M118R	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.24704949	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	451	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.214420312	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	86162804	12A2p6	cell line	sgMsh2	86162804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	183	0	0	NA	exonic	Olfr1043	synonymous SNV	Olfr1043:NM_146577:exon1:c.A144G:p.L48L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.414856691	3	0.7722966	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	397	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	AAA	synonymous	NA	NA	NA	NA
M2_p20	chr2	87002606	12A2p6	cell line	sgMsh2	87002606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	543	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.C636A:p.F212L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.363582269	3	1.98E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87092684	12A2p6	cell line	sgMsh2	87092684	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	373	0	0	NA	exonic	Olfr1109	nonsynonymous SNV	Olfr1109:NM_146766:exon1:c.T712C:p.F238L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.24704949	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87108042	12A2p6	cell line	sgMsh2	87108042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	296	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T344C:p.L115P	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.302985224	3	1.52E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	136	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.237726868	3	0.9999996	AAA	nonsynonymous	A	6	AAAAAA	NA
M2_p20	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	312	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.28433998	3	1.01E-09	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	87192045	12A2p6	cell line	sgMsh2	87192045	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	318	0	0	NA	exonic	Olfr1112	synonymous SNV	Olfr1112:NM_146661:exon1:c.C357T:p.C119C	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.508082914	2	0.9999995	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	274	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.78E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87309414	12A2p6	cell line	sgMsh2	87309414	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	640	0	0	NA	exonic	Olfr1118	synonymous SNV	Olfr1118:NM_207632:exon1:c.C624A:p.S208S	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr2	87434694	12A2p6	cell line	sgMsh2	87434694	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	209	0	0	NA	exonic	Olfr1124	nonsynonymous SNV	Olfr1124:NM_147028:exon1:c.T206G:p.L69R	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.251710802	3	1.68E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87434957	12A2p6	cell line	sgMsh2	87434957	A	C	SNV	Mutect2;Vardict	2	0.02	387	0	0	NA	exonic	Olfr1124	nonsynonymous SNV	Olfr1124:NM_147028:exon1:c.A469C:p.S157R	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.093226223	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87575796	12A2p6	cell line	sgMsh2	87575796	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	463	0	0	NA	exonic	Olfr1129	synonymous SNV	Olfr1129:NM_001011836:exon1:c.C711T:p.A237A	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	CCA	synonymous	NA	NA	NA	NA
M2_p20	chr2	87575892	12A2p6	cell line	sgMsh2	87575892	G	T	SNV	Mutect2;Vardict	2	0.039	402	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.G807T:p.K269N	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.181791134	3	1	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87608316	12A2p6	cell line	sgMsh2	87608316	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	347	0	0	NA	exonic	Olfr1130	nonsynonymous SNV	Olfr1130:NM_146838:exon2:c.A927C:p.K309N	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.661906182	2	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87628474	12A2p6	cell line	sgMsh2	87628474	G	T	SNV	Mutect2;Vardict	2	0.056	211	0	0	NA	exonic	Olfr1131	stopgain	Olfr1131:NM_146658:exon1:c.G10T:p.G4X	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.261033424	3	2.72E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	291	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.251710802	3	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	378	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.298323913	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87656257	12A2p6	cell line	sgMsh2	87656257	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	400	0	0	NA	exonic	Olfr1134	synonymous SNV	Olfr1134:NM_147030:exon2:c.C663A:p.I221I	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	TGA	synonymous	NA	NA	NA	NA
M2_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.529	183	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999992	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	87711770	12A2p6	cell line	sgMsh2	87711770	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	333	0	0	NA	exonic	Olfr1137	nonsynonymous SNV	Olfr1137:NM_001011833:exon1:c.G135A:p.M45I	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.265694735	3	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	386	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.354259647	3	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	210	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.405534069	3	0.9315113	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87746712	12A2p6	cell line	sgMsh2	87746712	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	243	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A515C:p.N172T	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.111871467	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	343	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.02E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	87903325	12A2p6	cell line	sgMsh2	87903325	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	426	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.C350A:p.A117D	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	88124676	12A2p6	cell line	sgMsh2	88124676	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	529	0	0	NA	exonic	Olfr1166	nonsynonymous SNV	Olfr1166:NM_146650:exon1:c.T308C:p.F103S	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	AAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr2	88274180	12A2p6	cell line	sgMsh2	88274180	G	T	SNV	Mutect2;Vardict	2	0.046	235	0	0	NA	exonic	Olfr1173	nonsynonymous SNV	Olfr1173:NM_207566:exon1:c.C868A:p.L290I	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	191	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.36824358	3	0.9983835	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M2_p20	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	135	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.391550136	3	0.9288106	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	425	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr2	88896778	12A2p6	cell line	sgMsh2	88896778	G	A	SNV	Mutect2;MuSe;Vardict	3	0.066	459	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.C818T:p.T273I	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.307646535	3	1.00E-09	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	88897118	12A2p6	cell line	sgMsh2	88897118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	383	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.A478G:p.I160V	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.578002581	2	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	89482570	12A2p6	cell line	sgMsh2	89482570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	179	0	0	NA	exonic	Olfr1241	synonymous SNV	Olfr1241:NM_146455:exon1:c.A564G:p.T188T	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999989	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	89482636	12A2p6	cell line	sgMsh2	89482636	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	164	0	0	NA	exonic	Olfr1241	nonsynonymous SNV	Olfr1241:NM_146455:exon1:c.T498G:p.F166L	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.554696026	2	0.9999912	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	89993582	12A2p6	cell line	sgMsh2	89993582	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	667	0	0	NA	exonic	Olfr1261	nonsynonymous SNV	Olfr1261:NM_146474:exon1:c.T188A:p.V63D	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	90015327	12A2p6	cell line	sgMsh2	90015327	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	421	0	0	NA	exonic	Olfr1263	synonymous SNV	Olfr1263:NM_146794:exon1:c.C396T:p.S132S	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.270356046	3	1	GCC	synonymous	NA	NA	NA	NA
M2_p20	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	313	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.28433998	3	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	90779273	12A2p6	cell line	sgMsh2	90779273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	201	0	0	NA	exonic	Fnbp4	synonymous SNV	Fnbp4:NM_018828:exon16:c.A2919G:p.E973E	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.344937024	3	0.9999243	AAG	synonymous	GAA	8	GAAGAAGA	NA
M2_p20	chr2	91057058	12A2p6	cell line	sgMsh2	91057058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	206	0	0	NA	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon8:c.A891G:p.K297K	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999998	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.883	402	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	4	1	1	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	164	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.999997	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	91304822	12A2p6	cell line	sgMsh2	91304822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	110	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon4:c.A292G:p.M98V,1110051M20Rik:NM_175123:exon4:c.A292G:p.M98V"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.69453536	2	0.9272976	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	91645793	12A2p6	cell line	sgMsh2	91645793	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	48	0	0	NA	exonic	Zfp408	nonsynonymous SNV	"Zfp408:NM_001033451:exon4:c.C1015T:p.R339C,Zfp408:NM_001347175:exon5:c.C1315T:p.R439C"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9924671	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	94326726	12A2p6	cell line	sgMsh2	94326726	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	152	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon19:c.T2758A:p.W920R,Ttc17:NM_183106:exon20:c.T2929A:p.W977R"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.289001291	3	0.9999935	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	82	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9992369	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	102113585	12A2p6	cell line	sgMsh2	102113585	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	exonic	Ldlrad3	nonsynonymous SNV	"Ldlrad3:NM_001290784:exon2:c.G141C:p.W47C,Ldlrad3:NM_178886:exon2:c.G141C:p.W47C"	2qE2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9996827	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	345	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.312307846	3	1.09E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	104646423	12A2p6	cell line	sgMsh2	104646423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	181	0	0	NA	exonic	Cstf3	nonsynonymous SNV	Cstf3:NM_145529:exon6:c.A380C:p.D127A	2qE2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.999999	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	105001354	12A2p6	cell line	sgMsh2	105001354	A	G	SNV	Mutect2;Vardict	2	0.041	265	0	0	NA	exonic	Eif3m	nonsynonymous SNV	Eif3m:NM_145380:exon9:c.T860C:p.V287A	2qE2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.191113757	3	1	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	147	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.466131114	2	0.9697568	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Vardict	2	0.059	1233	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	692	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	417	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.00E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M2_p20	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	274	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.32629178	3	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	348	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.01E-09	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	286	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.79E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	111780553	12A2p6	cell line	sgMsh2	111780553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	458	0	0	NA	exonic	Olfr1302	nonsynonymous SNV	Olfr1302:NM_146889:exon1:c.A241G:p.T81A	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.256372113	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	307	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.200436379	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	112249274	12A2p6	cell line	sgMsh2	112249274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	125	0	0	NA	exonic	Nutm1	synonymous SNV	Nutm1:NM_172521:exon7:c.T2295C:p.G765G	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999582	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	112337981	12A2p6	cell line	sgMsh2	112337981	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	121	0	0	NA	exonic	Slc12a6	nonsynonymous SNV	"Slc12a6:NM_001362700:exon6:c.A823C:p.I275L,Slc12a6:NM_133648:exon7:c.A715C:p.I239L,Slc12a6:NM_133649:exon7:c.A868C:p.I290L"	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.717841915	2	0.8797012	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	112632208	12A2p6	cell line	sgMsh2	112632208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	223	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon104:c.T14522C:p.V4841A	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.377566202	3	0.998337	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	112662556	12A2p6	cell line	sgMsh2	112662556	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	548	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon84:c.T11185A:p.F3729I	2qE3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.839036005	1	0.9997148	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	169	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999979	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	153	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999937	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	118205125	12A2p6	cell line	sgMsh2	118205125	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	457	0	0	NA	exonic	Fsip1	nonsynonymous SNV	Fsip1:NM_027759:exon11:c.C1268T:p.T423M	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.316969157	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	113	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999059	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	118718585	12A2p6	cell line	sgMsh2	118718585	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	200	0	0	NA	exonic	Plcb2	nonsynonymous SNV	"Plcb2:NM_001290790:exon11:c.T1094G:p.I365S,Plcb2:NM_177568:exon12:c.T1163G:p.I388S"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.843697316	1	0.9871549	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	119071167	12A2p6	cell line	sgMsh2	119071167	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.177	107	0	0	NA	exonic	Knl1	synonymous SNV	"Knl1:NM_001362732:exon8:c.A3348G:p.K1116K,Knl1:NM_029617:exon8:c.A3348G:p.K1116K"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.825052072	1	0.9164758	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.498	114	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M2_p20	chr2	119294259	12A2p6	cell line	sgMsh2	119294259	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.455	89	0	0	NA	exonic	Vps18	nonsynonymous SNV	Vps18:NM_172269:exon4:c.A1666G:p.M556V	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9995242	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	56	0	0	NA	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.386888825	3	0.7093386	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	55	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9952917	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.583	113	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	280	0	0	NA	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.400872758	3	0.9880529	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	113	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999059	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	152	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999932	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	135	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999787	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.578	41	0	0	NA	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9879684	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr2	125096071	12A2p6	cell line	sgMsh2	125096071	T	C	SNV	Mutect2;Vardict	2	0.045	125	0	0	NA	exonic	Myef2	synonymous SNV	"Myef2:NM_001162418:exon13:c.A1278G:p.G426G,Myef2:NM_010852:exon14:c.A1350G:p.G450G,Myef2:NM_001162417:exon15:c.A1401G:p.G467G"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.209759001	3	0.9999998	GTC	synonymous	CCCATG	14	CCCATGCCCATGCC	NA
M2_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	137	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999814	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	125566533	12A2p6	cell line	sgMsh2	125566533	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	120	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon26:c.G4100A:p.G1367E	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.447485869	2	0.8380005	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	125566629	12A2p6	cell line	sgMsh2	125566629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	158	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon26:c.A4004G:p.E1335G	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.801745516	1	0.8150424	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	125595037	12A2p6	cell line	sgMsh2	125595037	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.397	72	0	0	NA	exonic	Cep152	frameshift deletion	Cep152:NM_001081091:exon13:c.1582delT:p.S528Rfs*6	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr2	125771458	12A2p6	cell line	sgMsh2	125771458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	210	0	0	NA	exonic	Secisbp2l	synonymous SNV	Secisbp2l:NM_177608:exon4:c.T615C:p.P205P	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr2	125842450	12A2p6	cell line	sgMsh2	125842450	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	115	0	0	NA	exonic	Cops2	nonsynonymous SNV	"Cops2:NM_001285513:exon5:c.T151G:p.L51V,Cops2:NM_001285507:exon6:c.T544G:p.L182V,Cops2:NM_001285512:exon6:c.T151G:p.L51V,Cops2:NM_009939:exon6:c.T523G:p.L175V"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.675890115	2	0.9700341	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	315	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.11E-09	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	106	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.999849	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	268	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.228404246	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	276	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.56E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	130101144	12A2p6	cell line	sgMsh2	130101144	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	304	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.A621G:p.E207E	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.279678668	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	130276819	12A2p6	cell line	sgMsh2	130276819	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	156	0	0	NA	exonic	Nop56	synonymous SNV	Nop56:NM_024193:exon7:c.C870T:p.S290S	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.722503227	2	0.9420145	GCC	synonymous	NA	NA	NA	NA
M2_p20	chr2	130279206	12A2p6	cell line	sgMsh2	130279206	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.5	8	0	0	NA	exonic	Nop56	nonsynonymous SNV	Nop56:NM_024193:exon12:c.A1726C:p.K576Q	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.8945466	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	106	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.999849	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	130671560	12A2p6	cell line	sgMsh2	130671560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	211	0	0	NA	exonic	Itpa	synonymous SNV	Itpa:NM_025922:exon3:c.T129C:p.P43P	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr2	131143627	12A2p6	cell line	sgMsh2	131143627	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	152	0	0	NA	exonic	Hspa12b	nonsynonymous SNV	Hspa12b:NM_028306:exon12:c.A1307G:p.N436S	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999932	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	45	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9907907	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	117	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.316969157	3	0.9992372	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	153	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999937	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	132792637	12A2p6	cell line	sgMsh2	132792637	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	82	0	0	NA	exonic	Chgb	nonsynonymous SNV	Chgb:NM_007694:exon4:c.A498C:p.E166D	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.703857982	2	0.771435	AAG	nonsynonymous	AGAA	8	AGAAAGAA	NA
M2_p20	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	90	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9995553	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	136100748	12A2p6	cell line	sgMsh2	136100748	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	210	0	0	NA	exonic	Pak7	nonsynonymous SNV	"Pak7:NM_172858:exon5:c.C1471A:p.L491I,Pak7:NM_001360382:exon6:c.C1471A:p.L491I,Pak7:NM_001360384:exon6:c.C1471A:p.L491I"	2qF3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.405534069	3	0.9315113	AGG	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr2	142834127	12A2p6	cell line	sgMsh2	142834127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	235	0	0	NA	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon12:c.T1252A:p.L418M,Kif16b:NM_001355123:exon12:c.T1252A:p.L418M"	2qG1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.58E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	148768783	12A2p6	cell line	sgMsh2	148768783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.545	157	0	0	NA	exonic	Cst11	nonsynonymous SNV	Cst11:NM_030059:exon3:c.A347G:p.Y116C	2qG3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999952	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.616	58	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9961519	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	152485942	12A2p6	cell line	sgMsh2	152485942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.508	177	0	0	NA	exonic	Defb22	nonsynonymous SNV	Defb22:NM_001002791:exon2:c.A322G:p.T108A	2qG3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	153401304	12A2p6	cell line	sgMsh2	153401304	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	0	0	NA	exonic	Asxl1	nonsynonymous SNV	Asxl1:NM_001039939:exon12:c.C3776G:p.T1259R	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.787761583	1	0.7573897	ACA	nonsynonymous	CAGA	8	CAGACAGA	NA
M2_p20	chr2	153418048	12A2p6	cell line	sgMsh2	153418048	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	79	0	0	NA	exonic	Nol4l	nonsynonymous SNV	"Nol4l:NM_001001986:exon4:c.A485T:p.D162V,Nol4l:NM_001134300:exon7:c.A1217T:p.D406V"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9990656	GTC	nonsynonymous	GTCATC	18	GTCATCGTCATCGTCATC	NA
M2_p20	chr2	153891986	12A2p6	cell line	sgMsh2	153891986	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	59	0	0	NA	exonic	Bpifb2	nonsynonymous SNV	Bpifb2:NM_025631:exon14:c.A1247C:p.K416T	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9964023	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	133	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999756	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr2	154628058	12A2p6	cell line	sgMsh2	154628058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	41	0	0	NA	exonic	Zfp341	synonymous SNV	Zfp341:NM_199304:exon5:c.T660C:p.N220N	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9879684	ATG	synonymous	TGC	10	TGCTGCTGCT	NA
M2_p20	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	118	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999329	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M2_p20	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	125	0	0	NA	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999582	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	16	0	0	NA	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9379943	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr2	155990748	12A2p6	cell line	sgMsh2	155990748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	69	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon28:c.A4589G:p.E1530G,Cep250:NM_001130000:exon28:c.A4592G:p.E1531G,Cep250:NM_008383:exon29:c.A4529G:p.E1510G,Cep250:NM_177217:exon29:c.A4529G:p.E1510G"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.722503227	2	0.5790949	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	75	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.550034714	2	0.9896256	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	156079400	12A2p6	cell line	sgMsh2	156079400	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	153	0	0	NA	exonic	Cpne1	nonsynonymous SNV	"Cpne1:NM_170590:exon2:c.T65C:p.I22T,Cpne1:NM_170588:exon3:c.T65C:p.I22T"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.275017357	3	0.9999982	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.526	167	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	502	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr2	157196215	12A2p6	cell line	sgMsh2	157196215	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.445	25	0	0	NA	exonic	Rbl1	stopgain	"Rbl1:NM_001139516:exon3:c.431delT:p.L144fs*0,Rbl1:NM_011249:exon3:c.431delT:p.L144fs*0"	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M2_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	27	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9696004	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	334	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	1.03E-09	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	282	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	2.04E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M2_p20	chr2	164066585	12A2p6	cell line	sgMsh2	164066585	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	199	0	0	NA	exonic	Tomm34	nonsynonymous SNV	"Tomm34:NM_001291155:exon2:c.T212G:p.I71S,Tomm34:NM_025996:exon2:c.T212G:p.I71S"	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.964891406	1	0.9999968	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	165280788	12A2p6	cell line	sgMsh2	165280788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	115	0	0	NA	exonic	Slc35c2	nonsynonymous SNV	"Slc35c2:NM_001252573:exon6:c.T575G:p.L192R,Slc35c2:NM_001252574:exon6:c.T575G:p.L192R,Slc35c2:NM_001252575:exon6:c.T233G:p.L78R,Slc35c2:NM_001363016:exon6:c.T575G:p.L192R,Slc35c2:NM_144893:exon6:c.T575G:p.L192R,Slc35c2:NM_001363015:exon7:c.T575G:p.L192R"	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.564018648	2	0.9995483	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	90	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9995553	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	167986553	12A2p6	cell line	sgMsh2	167986553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	60	0	0	NA	exonic	Ripor3	synonymous SNV	Ripor3:NM_001080708:exon14:c.T1677C:p.C559C	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9966365	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	20	0	0	NA	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.932262228	1	0.9255089	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	168262628	12A2p6	cell line	sgMsh2	168262628	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	122	0	0	NA	exonic	Kcng1	nonsynonymous SNV	"Kcng1:NM_001081134:exon3:c.C1297T:p.R433W,Kcng1:NM_001379458:exon3:c.C1297T:p.R433W"	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9999488	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	168754470	12A2p6	cell line	sgMsh2	168754470	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.118	68	0	0	NA	exonic	Sall4	nonsynonymous SNV	Sall4:NM_175303:exon2:c.G2449C:p.A817P	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.550034714	2	0.9817635	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	84	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9993332	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	149	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9999917	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	141	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.391550136	3	0.9374489	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	173118601	12A2p6	cell line	sgMsh2	173118601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.69	43	0	0	NA	exonic	Ctcfl	nonsynonymous SNV	"Ctcfl:NM_001081387:exon2:c.T188C:p.V63A,Ctcfl:NM_001355185:exon2:c.T188C:p.V63A"	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9894727	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	173522694	12A2p6	cell line	sgMsh2	173522694	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	88	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon1:c.G31T:p.A11S	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.829713383	1	0.9170448	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	103	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.354259647	3	0.9827267	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.59	55	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	3	1	1	0.9952917	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	89	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	2	1	1	0.9995242	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	180660874	12A2p6	cell line	sgMsh2	180660874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	58	0	0	NA	exonic	Dido1	nonsynonymous SNV	Dido1:NM_175551:exon16:c.A5236G:p.T1746A	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	1	1	0.9961519	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	180776299	12A2p6	cell line	sgMsh2	180776299	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	73	0	0	NA	exonic	Bhlhe23	nonsynonymous SNV	Bhlhe23:NM_080641:exon1:c.A445T:p.I149F	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.876326494	1	0.9691959	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	91	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.475453736	2	0.9449087	ATC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	317	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-3197272-181807525	4	4	0	0.9	4.195180026	NA	1	0.237726868	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	5242268	12A2p6	cell line	sgMsh2	5242268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	192	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.T553C:p.S185P,Zfhx4:NM_030708:exon2:c.T553C:p.S185P"	3qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	144	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M2_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	296	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	6617304	12A2p6	cell line	sgMsh2	6617304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	282	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon3:c.A523G:p.M175V	3qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	6620029	12A2p6	cell line	sgMsh2	6620029	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	166	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon1:c.A364T:p.T122S	3qA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	10322996	12A2p6	cell line	sgMsh2	10322996	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	252	0	0	NA	exonic	Impa1	nonsynonymous SNV	"Impa1:NM_001310433:exon6:c.T365C:p.V122A,Impa1:NM_018864:exon6:c.T365C:p.V122A"	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.144500645	3	1	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	318	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.09E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	279	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.69453536	2	0.9998735	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	14537301	12A2p6	cell line	sgMsh2	14537301	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	184	0	0	NA	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon4:c.T453C:p.C151C,Lrrcc1:NM_001163580:exon4:c.T453C:p.C151C,Lrrcc1:NM_028915:exon4:c.T453C:p.C151C"	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.69453536	2	0.9953264	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr3	16205022	12A2p6	cell line	sgMsh2	16205022	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	453	0	0	NA	exonic	Ythdf3	synonymous SNV	"Ythdf3:NM_001358042:exon3:c.T1179A:p.G393G,Ythdf3:NM_001145919:exon4:c.T1332A:p.G444G,Ythdf3:NM_001358043:exon4:c.T1179A:p.G393G,Ythdf3:NM_001358041:exon5:c.T1344A:p.G448G,Ythdf3:NM_172677:exon5:c.T1365A:p.G455G"	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.494098981	2	4.97E-08	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	95	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.825052072	1	0.9097478	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	19218307	12A2p6	cell line	sgMsh2	19218307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	89	0	0	NA	exonic	Mtfr1	nonsynonymous SNV	"Mtfr1:NM_001253390:exon7:c.T904C:p.S302P,Mtfr1:NM_001253391:exon7:c.T904C:p.S302P,Mtfr1:NM_001356295:exon7:c.T904C:p.S302P,Mtfr1:NM_026182:exon7:c.T904C:p.S302P"	3qA2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9961899	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	186	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999993	ACA	synonymous	NA	NA	NA	NA
M2_p20	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	118	0	0	NA	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999329	AAT	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr3	20150581	12A2p6	cell line	sgMsh2	20150581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	133	0	0	NA	exonic	Gyg	nonsynonymous SNV	"Gyg:NM_001355261:exon4:c.A439G:p.N147D,Gyg:NM_013755:exon4:c.A439G:p.N147D"	3qA2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999756	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	22203215	12A2p6	cell line	sgMsh2	22203215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	116	0	0	NA	exonic	Tbl1xr1	nonsynonymous SNV	Tbl1xr1:NM_030732:exon13:c.T1241C:p.M414T	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.559357337	2	0.99961	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	464	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9999177	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	30810494	12A2p6	cell line	sgMsh2	30810494	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	148	0	0	NA	exonic	Sec62	nonsynonymous SNV	"Sec62:NM_001357528:exon5:c.A506T:p.K169I,Sec62:NM_027016:exon5:c.A506T:p.K169I"	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999912	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	31037869	12A2p6	cell line	sgMsh2	31037869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	236	0	0	NA	exonic	Prkci	synonymous SNV	Prkci:NM_008857:exon9:c.T726C:p.G242G	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9996182	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr3	31098119	12A2p6	cell line	sgMsh2	31098119	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	249	0	0	NA	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon2:c.T789A:p.H263Q,Skil:NM_011386:exon2:c.T789A:p.H263Q,Skil:NM_001271772:exon4:c.T549A:p.H183Q"	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1.06E-08	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	237	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	2.27E-08	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	33807840	12A2p6	cell line	sgMsh2	33807840	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	28	0	0	NA	exonic	Ttc14	nonsynonymous SNV	"Ttc14:NM_001290500:exon10:c.A1133C:p.K378T,Ttc14:NM_027619:exon11:c.A1289C:p.K430T"	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9715299	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	79	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9990656	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	35806800	12A2p6	cell line	sgMsh2	35806800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	117	0	0	NA	exonic	Atp11b	nonsynonymous SNV	Atp11b:NM_029570:exon12:c.T1035G:p.F345L	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999282	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr3	36554653	12A2p6	cell line	sgMsh2	36554653	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	272	0	0	NA	exonic	Exosc9	nonsynonymous SNV	Exosc9:NM_019393:exon5:c.G400A:p.V134I	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9999999	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	186	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999993	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	438	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	257	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.992859273	1	1.16E-08	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr3	45380504	12A2p6	cell line	sgMsh2	45380504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	155	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.G1252A:p.E418K,Pcdh10:NM_001098171:exon1:c.G1252A:p.E418K,Pcdh10:NM_001098172:exon1:c.G1252A:p.E418K,Pcdh10:NM_011043:exon1:c.G1252A:p.E418K"	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.820390761	1	0.9230849	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	45380829	12A2p6	cell line	sgMsh2	45380829	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	157	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.A1577T:p.Y526F,Pcdh10:NM_001098171:exon1:c.A1577T:p.Y526F,Pcdh10:NM_001098172:exon1:c.A1577T:p.Y526F,Pcdh10:NM_011043:exon1:c.A1577T:p.Y526F"	3qB	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.554696026	2	0.9999848	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	49756618	12A2p6	cell line	sgMsh2	49756618	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	169	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.A247C:p.T83P	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.293662602	3	0.9999975	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	53653554	12A2p6	cell line	sgMsh2	53653554	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	351	0	0	NA	exonic	Frem2	synonymous SNV	Frem2:NM_172862:exon1:c.C3531T:p.D1177D	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.01E-09	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	110	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9998848	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	250	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.769116338	2	0.806467	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	170	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.731825849	2	0.9332233	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	54729252	12A2p6	cell line	sgMsh2	54729252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	170	0	0	NA	exonic	Exosc8	synonymous SNV	"Exosc8:NM_001163570:exon10:c.A669G:p.T223T,Exosc8:NM_027148:exon10:c.A657G:p.T219T"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.750471093	2	0.8237076	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	54782447	12A2p6	cell line	sgMsh2	54782447	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	45	0	0	NA	exonic	Smad9	synonymous SNV	Smad9:NM_019483:exon2:c.A87G:p.E29E	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9907907	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	251	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.978875339	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	177	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999988	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	119	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9989832	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M2_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	286	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.7101451	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	411	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	58415786	12A2p6	cell line	sgMsh2	58415786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	43	0	0	NA	exonic	Tsc22d2	nonsynonymous SNV	"Tsc22d2:NM_001081229:exon1:c.T98C:p.L33P,Tsc22d2:NM_001347233:exon1:c.T98C:p.L33P"	3qD	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.750471093	1	0.6972422	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	125	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	244	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.45E-08	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	59931664	12A2p6	cell line	sgMsh2	59931664	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	525	0	0	NA	exonic	Aadacl2fm1	synonymous SNV	Aadacl2fm1:NM_177661:exon4:c.A6T:p.S2S	3qD	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr3	62602613	12A2p6	cell line	sgMsh2	62602613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	198	0	0	NA	exonic	Gpr149	synonymous SNV	"Gpr149:NM_001356525:exon2:c.A1080G:p.P360P,Gpr149:NM_177346:exon2:c.A1080G:p.P360P"	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9992435	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	30	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9750382	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	64117207	12A2p6	cell line	sgMsh2	64117207	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	545	0	0	NA	exonic	Vmn2r2	nonsynonymous SNV	"Vmn2r2:NM_001104592:exon5:c.A1700C:p.D567A,Vmn2r2:NM_001385025:exon6:c.A1952C:p.D651A"	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.5556161	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	523	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	173	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.806406827	1	0.8515817	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	69030422	12A2p6	cell line	sgMsh2	69030422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	216	0	0	NA	exonic	Smc4	nonsynonymous SNV	"Smc4:NM_001356976:exon18:c.A2569G:p.T857A,Smc4:NM_133786:exon18:c.A2779G:p.T927A"	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.508082914	2	0.9999571	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Strelka2;Vardict	2	0.2604	96	0	0	NA	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M2_p20	chr3	69575621	12A2p6	cell line	sgMsh2	69575621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	184	0	0	NA	exonic	B3galnt1	synonymous SNV	B3galnt1:NM_020026:exon3:c.T306C:p.G102G	3qE1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999992	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	307	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.792422894	1	0.5858671	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	72922826	12A2p6	cell line	sgMsh2	72922826	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	200	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon28:c.C3391T:p.P1131S	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999997	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	73639948	12A2p6	cell line	sgMsh2	73639948	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	243	0	0	NA	exonic	Bche	nonsynonymous SNV	Bche:NM_009738:exon4:c.C1781T:p.T594I	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	4.00E-08	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	79345523	12A2p6	cell line	sgMsh2	79345523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	505	0	0	NA	exonic	Gm17359	nonsynonymous SNV	"Gm17359:NM_001142953:exon1:c.A44G:p.K15R,Gm17359:NM_001370773:exon1:c.A44G:p.K15R"	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.9409361	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	79449318	12A2p6	cell line	sgMsh2	79449318	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	75	0	0	NA	exonic	Gm17359	nonsynonymous SNV	Gm17359:NM_001142953:exon4:c.T427G:p.Y143D	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.536050781	2	0.9888926	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9995553	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	79705641	12A2p6	cell line	sgMsh2	79705641	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	78	0	0	NA	exonic	Rxfp1	synonymous SNV	Rxfp1:NM_212452:exon2:c.C121T:p.L41L	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.000999602	AGG	synonymous	AGGC	9	AGGCAGGCA	NA
M2_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	310	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.16E-09	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.392	156	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	218	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	83068264	12A2p6	cell line	sgMsh2	83068264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	391	0	0	NA	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon10:c.A840G:p.I280M	3qE3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.974214028	1	1.02E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	198	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9929864	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr3	84134043	12A2p6	cell line	sgMsh2	84134043	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	209	0	0	NA	exonic	Mnd1	nonsynonymous SNV	Mnd1:NM_029797:exon4:c.G251A:p.R84H	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	443	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.94158485	1	1.15E-09	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M2_p20	chr3	85652353	12A2p6	cell line	sgMsh2	85652353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	132	0	0	NA	exonic	Gatb	nonsynonymous SNV	Gatb:NM_144896:exon12:c.A1483C:p.M495L	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999739	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	364	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	87733275	12A2p6	cell line	sgMsh2	87733275	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	241	0	0	NA	exonic	Arhgef11	synonymous SNV	"Arhgef11:NM_001360197:exon35:c.C1875A:p.P625P,Arhgef11:NM_001003912:exon36:c.C3825A:p.P1275P,Arhgef11:NM_001360195:exon36:c.C3738A:p.P1246P"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.76E-08	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr3	88091546	12A2p6	cell line	sgMsh2	88091546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	76	0	0	NA	exonic	Iqgap3	nonsynonymous SNV	Iqgap3:NM_001033484:exon10:c.A953G:p.D318G	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.998856	GAT	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M2_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	117	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.98353665	1	0.9998602	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	88484736	12A2p6	cell line	sgMsh2	88484736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	51	0	0	NA	exonic	Lmna	nonsynonymous SNV	"Lmna:NM_001002011:exon7:c.A1259G:p.K420R,Lmna:NM_001111102:exon7:c.A1259G:p.K420R,Lmna:NM_019390:exon7:c.A923G:p.K308R"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.661906182	2	0.7057674	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	88983699	12A2p6	cell line	sgMsh2	88983699	A	C	SNV	Mutect2;Vardict	2	0.046	123	0	0	NA	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon2:c.A2884C:p.M962L	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.214420312	3	0.9999996	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	89090663	12A2p6	cell line	sgMsh2	89090663	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.213	17	0	0	NA	exonic	Rusc1	nonsynonymous SNV	Rusc1:NM_028188:exon3:c.C1580G:p.A527G	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.992859273	1	0.9395051	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9992867	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M2_p20	chr3	89229153	12A2p6	cell line	sgMsh2	89229153	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	64	0	0	NA	exonic	Muc1	synonymous SNV	Muc1:NM_013605:exon1:c.C34T:p.L12L	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.680551426	2	0.7512064	GCT	synonymous	CTG	8	CTGCTGCT	NA
M2_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	77	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9989306	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	141	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.783100271	1	0.6436308	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	89943330	12A2p6	cell line	sgMsh2	89943330	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	242	0	0	NA	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon25:c.G3220T:p.G1074W,Atp8b2:NM_001081182:exon26:c.G3163T:p.G1055W"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9999955	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	70	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9982853	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	218	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr3	90129142	12A2p6	cell line	sgMsh2	90129142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	269	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon8:c.C1024T:p.L342F	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.722503227	2	0.9975135	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	325	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.06E-09	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	90269041	12A2p6	cell line	sgMsh2	90269041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	104	0	0	NA	exonic	Dennd4b	nonsynonymous SNV	"Dennd4b:NM_001356483:exon5:c.T694G:p.S232A,Dennd4b:NM_201407:exon5:c.T727G:p.S243A"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9998272	GTC	nonsynonymous	AGTC	8	AGTCAGTC	NA
M2_p20	chr3	90388429	12A2p6	cell line	sgMsh2	90388429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	203	0	0	NA	exonic	Slc27a3	nonsynonymous SNV	"Slc27a3:NM_001316688:exon3:c.A500G:p.Y167C,Slc27a3:NM_011988:exon3:c.A887G:p.Y296C"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	92288692	12A2p6	cell line	sgMsh2	92288692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	535	0	0	NA	exonic	Sprr2a3	synonymous SNV	Sprr2a3:NM_001309382:exon2:c.T105C:p.P35P	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.969552717	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr3	92408741	12A2p6	cell line	sgMsh2	92408741	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	428	0	0	NA	exonic	Sprr2i	nonsynonymous SNV	Sprr2i:NM_011475:exon2:c.A26G:p.K9R	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	338	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.7867787	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr3	93444389	12A2p6	cell line	sgMsh2	93444389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	113	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A1135G:p.T379A	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9902685	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	624	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	94639416	12A2p6	cell line	sgMsh2	94639416	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	343	0	0	NA	exonic	Tuft1	nonsynonymous SNV	Tuft1:NM_011656:exon2:c.A114C:p.E38D	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	82	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9992369	CTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	106	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.69453536	2	0.9163475	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	240	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.638599626	2	0.9999946	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95240774	12A2p6	cell line	sgMsh2	95240774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	29	0	0	NA	exonic	Gm128	nonsynonymous SNV	Gm128:NM_001024841:exon1:c.C208A:p.L70M	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9487526	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	306	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.21E-09	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	320	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.08E-09	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	164	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.94158485	1	0.9999176	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	165	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999972	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	96151988	12A2p6	cell line	sgMsh2	96151988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	96	0	0	NA	exonic	Otud7b	nonsynonymous SNV	"Otud7b:NM_001025614:exon9:c.A1067G:p.Q356R,Otud7b:NM_001025613:exon10:c.A1067G:p.Q356R"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.787761583	1	0.7465365	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	96190686	12A2p6	cell line	sgMsh2	96190686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	277	0	0	NA	exonic	Sv2a	nonsynonymous SNV	Sv2a:NM_022030:exon10:c.A1604G:p.Y535C	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	0.9999861	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	26	0	0	NA	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr3	96643594	12A2p6	cell line	sgMsh2	96643594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	354	0	0	NA	exonic	Pex11b	nonsynonymous SNV	"Pex11b:NM_001162387:exon4:c.A394G:p.I132V,Pex11b:NM_001162388:exon4:c.A352G:p.I118V,Pex11b:NM_011069:exon4:c.A394G:p.I132V"	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.01E-09	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	244	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.45E-08	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	165	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.09572353	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	223	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr3	97767541	12A2p6	cell line	sgMsh2	97767541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	145	0	0	NA	exonic	Pde4dip	nonsynonymous SNV	Pde4dip:NM_178080:exon1:c.A58G:p.I20V	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999892	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	98314260	12A2p6	cell line	sgMsh2	98314260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	exonic	Phgdh	nonsynonymous SNV	Phgdh:NM_016966:exon11:c.T1355C:p.V452A	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9852015	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	150	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.918278294	1	0.9994652	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr3	100065527	12A2p6	cell line	sgMsh2	100065527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	214	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon28:c.C4054T:p.H1352Y	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.699196671	2	0.9978873	CCA	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr3	100075859	12A2p6	cell line	sgMsh2	100075859	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	397	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon30:c.G4474A:p.D1492N	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.787761583	2	0.6618406	TGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	155	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999945	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	102941057	12A2p6	cell line	sgMsh2	102941057	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	213	0	0	NA	exonic	Nr1h5	nonsynonymous SNV	"Nr1h5:NM_198658:exon11:c.T1331G:p.L444R,Nr1h5:NM_201619:exon11:c.T1307G:p.L436R,Nr1h5:NM_201622:exon11:c.T1157G:p.L386R"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.261033424	3	2.41E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	177	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999988	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	417	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.85768125	1	0.9999077	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	103353781	12A2p6	cell line	sgMsh2	103353781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	186	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon19:c.T3244C:p.F1082L,Trim33:NM_053170:exon20:c.T3295C:p.F1099L"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.633938315	2	0.9999116	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	104015286	12A2p6	cell line	sgMsh2	104015286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	258	0	0	NA	exonic	Magi3	nonsynonymous SNV	Magi3:NM_001159354:exon21:c.A4114G:p.T1372A	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	6.25E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	104020372	12A2p6	cell line	sgMsh2	104020372	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	66	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon19:c.G3098T:p.G1033V,Magi3:NM_133853:exon19:c.G3098T:p.G1033V"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	0.9667124	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	104784100	12A2p6	cell line	sgMsh2	104784100	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	69	0	0	NA	exonic	Ppm1j	nonsynonymous SNV	Ppm1j:NM_027982:exon5:c.G903C:p.E301D	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.545373403	2	0.9833552	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	104804572	12A2p6	cell line	sgMsh2	104804572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	110	0	0	NA	exonic	Mov10	synonymous SNV	"Mov10:NM_008619:exon3:c.A483G:p.K161K,Mov10:NM_001163440:exon4:c.A702G:p.K234K,Mov10:NM_001163441:exon4:c.A483G:p.K161K"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	0.9956341	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	135	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999787	GGA	synonymous	NA	NA	NA	NA
M2_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	131	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999721	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	374	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9999945	CTG	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	179	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999989	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	189	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	152	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999932	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	62	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9970603	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	107616882	12A2p6	cell line	sgMsh2	107616882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	167	0	0	NA	exonic	Strip1	nonsynonymous SNV	Strip1:NM_153563:exon16:c.T1718C:p.V573A	3qF2.3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9991957	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	238	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	2.13E-08	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	108393194	12A2p6	cell line	sgMsh2	108393194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	36	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.T8549C:p.L2850P,Celsr2:NM_017392:exon33:c.T8549C:p.L2850P"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9832161	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	139	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.8178501	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	172	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.913616983	1	0.9997027	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	105	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.731825849	2	0.7315047	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	108889692	12A2p6	cell line	sgMsh2	108889692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	115	0	0	NA	exonic	Fndc7	synonymous SNV	"Fndc7:NM_001165965:exon1:c.T15C:p.P5P,Fndc7:NM_177091:exon1:c.T15C:p.P5P"	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999178	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr3	109166455	12A2p6	cell line	sgMsh2	109166455	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	158	0	0	NA	exonic	Slc25a24	nonsynonymous SNV	Slc25a24:NM_172685:exon10:c.T1373C:p.I458T	3qF3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9950414	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	174	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.946246161	1	0.9999612	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	70	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9439472	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	195	0	0	NA	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.787761583	1	0.6234162	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	241	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.76E-08	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	116891924	12A2p6	cell line	sgMsh2	116891924	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	345	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon9:c.A943G:p.K315E,Frrs1:NM_009146:exon9:c.A943G:p.K315E"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.228404246	3	1	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	116891944	12A2p6	cell line	sgMsh2	116891944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	364	0	0	NA	exonic	Frrs1	synonymous SNV	"Frrs1:NM_001113478:exon9:c.T963C:p.N321N,Frrs1:NM_009146:exon9:c.T963C:p.N321N"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	165	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999972	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	118781946	12A2p6	cell line	sgMsh2	118781946	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	362	0	0	NA	exonic	Dpyd	synonymous SNV	Dpyd:NM_170778:exon5:c.T432C:p.A144A	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.9895496	CTG	synonymous	TGC	8	TGCTGCTG	NA
M2_p20	chr3	118797421	12A2p6	cell line	sgMsh2	118797421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	136	0	0	NA	exonic	Dpyd	nonsynonymous SNV	Dpyd:NM_170778:exon6:c.A557G:p.Y186C	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.750471093	2	0.7120895	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	122014355	12A2p6	cell line	sgMsh2	122014355	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	224	0	0	NA	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon23:c.C3181A:p.P1061T,Arhgap29:NM_172525:exon23:c.C3181A:p.P1061T"	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9998763	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	122275867	12A2p6	cell line	sgMsh2	122275867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	247	0	0	NA	exonic	Dnttip2	nonsynonymous SNV	Dnttip2:NM_153806:exon2:c.A730G:p.M244V	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.999913	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	245	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1.36E-08	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	224	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.741148471	2	0.9635188	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	124578524	12A2p6	cell line	sgMsh2	124578524	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	196	0	0	NA	exonic	1700003H04Rik	synonymous SNV	1700003H04Rik:NM_001368235:exon3:c.C210T:p.D70D	3qG1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999997	AGT	synonymous	NA	NA	NA	NA
M2_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	204	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.946246161	1	0.9999911	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Strelka2;Vardict	2	0.1684	190	0	0	NA	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.784964796	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	256	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.787761583	1	0.537199	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	276	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	2.56E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	129874332	12A2p6	cell line	sgMsh2	129874332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	301	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon13:c.A1533G:p.I511M,Cfi:NM_007686:exon13:c.A1536G:p.I512M"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.77843896	2	0.747016	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	110	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9998848	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	339	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	178	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.750471093	2	0.8444011	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	131605851	12A2p6	cell line	sgMsh2	131605851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	144	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon8:c.T902G:p.V301G,Papss1:NM_001289477:exon9:c.T839G:p.V280G,Papss1:NM_001289478:exon9:c.T839G:p.V280G,Papss1:NM_001289479:exon10:c.T695G:p.V232G"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.974214028	1	0.9999582	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	132086094	12A2p6	cell line	sgMsh2	132086094	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	48	0	0	NA	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon1:c.T62G:p.L21R	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.927600917	1	0.9753905	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	239	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	2.00E-08	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	173	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999984	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr3	135246891	12A2p6	cell line	sgMsh2	135246891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	129	0	0	NA	exonic	Cenpe	synonymous SNV	Cenpe:NM_173762:exon31:c.A4341G:p.E1447E	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.9995135	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr3	135411028	12A2p6	cell line	sgMsh2	135411028	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	252	0	0	NA	exonic	Cisd2	nonsynonymous SNV	Cisd2:NM_025902:exon2:c.T301C:p.C101R	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.340275713	3	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	135455359	12A2p6	cell line	sgMsh2	135455359	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	238	0	0	NA	exonic	Ube2d3	nonsynonymous SNV	"Ube2d3:NM_001356597:exon3:c.A102T:p.Q34H,Ube2d3:NM_001356594:exon4:c.A102T:p.Q34H,Ube2d3:NM_001356595:exon4:c.A102T:p.Q34H,Ube2d3:NM_001356596:exon4:c.A102T:p.Q34H,Ube2d3:NM_025356:exon4:c.A102T:p.Q34H"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.9998702	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	209	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	163	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999968	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	283	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.759793716	2	0.9395671	AAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr3	138550967	12A2p6	cell line	sgMsh2	138550967	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	246	0	0	NA	exonic	Eif4e	synonymous SNV	"Eif4e:NM_001313980:exon6:c.G105A:p.Q35Q,Eif4e:NM_007917:exon6:c.G360A:p.Q120Q"	3qG3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9845207	AGC	synonymous	AGC	8	AGCAGCAG	NA
M2_p20	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.992859273	1	0.9999983	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	428	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.922939606	1	5.84E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	467	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.9982492	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	145086400	12A2p6	cell line	sgMsh2	145086400	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	262	0	0	NA	exonic	Clca2	nonsynonymous SNV	Clca2:NM_178697:exon7:c.A1099T:p.I367F	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.335614402	3	0.9999991	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	143	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999876	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	181	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.999999	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	146904174	12A2p6	cell line	sgMsh2	146904174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	213	0	0	NA	exonic	Ttll7	nonsynonymous SNV	"Ttll7:NM_001302957:exon7:c.T647C:p.L216S,Ttll7:NM_001302958:exon7:c.T647C:p.L216S,Ttll7:NM_001357217:exon7:c.T647C:p.L216S"	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	146944196	12A2p6	cell line	sgMsh2	146944196	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	169	0	0	NA	exonic	Ttll7	synonymous SNV	"Ttll7:NM_001357217:exon16:c.T1980G:p.S660S,Ttll7:NM_001302957:exon17:c.T2055G:p.S685S"	3qH2	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.214420312	3	2.14E-09	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr3	153867772	12A2p6	cell line	sgMsh2	153867772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	221	0	0	NA	exonic	Msh4	synonymous SNV	"Msh4:NM_031870:exon16:c.T2244C:p.D748D,Msh4:NM_001282054:exon17:c.T1662C:p.D554D"	3qH3	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	CAT	synonymous	ATC	10	ATCATCATCA	NA
M2_p20	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	98	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	0.9970958	CCA	synonymous	C	5	CCCCC	NA
M2_p20	chr3	154261327	12A2p6	cell line	sgMsh2	154261327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	326	0	0	NA	exonic	Slc44a5	nonsynonymous SNV	Slc44a5:NM_001081263:exon17:c.A1649G:p.Q550R	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	2	1	1	1.05E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	655	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	156	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.894971739	1	0.9985168	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	142	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999867	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	154939727	12A2p6	cell line	sgMsh2	154939727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	178	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon16:c.G1520A:p.R507Q	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999968	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	269	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	0.647922248	2	0.9999976	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	143	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-155137687	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999876	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	153	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-155163725-159913826	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999937	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	238	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-155163725-159913826	4	3	1	0.9	4.195180026	NA	1	1	1	2.13E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	3585720	12A2p6	cell line	sgMsh2	3585720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	exonic	Tgs1	nonsynonymous SNV	Tgs1:NM_054089:exon4:c.A596G:p.Y199C	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999232	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	3903963	12A2p6	cell line	sgMsh2	3903963	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	165	0	0	NA	exonic	Plag1	synonymous SNV	Plag1:NM_019969:exon6:c.C1227T:p.P409P	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	GGG	synonymous	G	5	GGGGG	NA
M2_p20	chr4	4058878	12A2p6	cell line	sgMsh2	4058878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	180	0	0	NA	exonic	Sdr16c6	nonsynonymous SNV	Sdr16c6:NM_001080710:exon6:c.T707C:p.L236P	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.999999	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	8752335	12A2p6	cell line	sgMsh2	8752335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	43	0	0	NA	exonic	Chd7	synonymous SNV	Chd7:NM_001277149:exon2:c.G831A:p.G277G	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9894727	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr4	8855032	12A2p6	cell line	sgMsh2	8855032	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	108	0	0	NA	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon30:c.A2558G:p.D853G,Chd7:NM_001277149:exon31:c.A6260G:p.D2087G"	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.433501936	2	0.6602453	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	100	0	0	NA	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997736	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	228	0	0	NA	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	4.08E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	12145425	12A2p6	cell line	sgMsh2	12145425	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	258	0	0	NA	exonic	Rbm12b1	nonsynonymous SNV	Rbm12b1:NM_028226:exon3:c.T1396A:p.F466I	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	6.25E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	13859933	12A2p6	cell line	sgMsh2	13859933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	90	0	0	NA	exonic	Runx1t1	nonsynonymous SNV	"Runx1t1:NM_001111026:exon6:c.G803A:p.G268D,Runx1t1:NM_009822:exon6:c.G782A:p.G261D,Runx1t1:NM_001111027:exon7:c.G863A:p.G288D"	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9995553	GGC	nonsynonymous	GCCT	8	GCCTGCCT	NA
M2_p20	chr4	13859936	12A2p6	cell line	sgMsh2	13859936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	87	0	0	NA	exonic	Runx1t1	nonsynonymous SNV	"Runx1t1:NM_001111026:exon6:c.T806C:p.L269P,Runx1t1:NM_009822:exon6:c.T785C:p.L262P,Runx1t1:NM_001111027:exon7:c.T866C:p.L289P"	4qA1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.932262228	1	0.9958398	CTG	nonsynonymous	GCCT	8	GCCTGCCT	NA
M2_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	245	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.36E-08	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.698	119	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9999373	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	74	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9986907	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	203	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	241	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.76E-08	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	22390800	12A2p6	cell line	sgMsh2	22390800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	exonic	Fbxl4	nonsynonymous SNV	Fbxl4:NM_172988:exon5:c.T982C:p.Y328H	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9980378	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	22486922	12A2p6	cell line	sgMsh2	22486922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	62	0	0	NA	exonic	Pou3f2	nonsynonymous SNV	Pou3f2:NM_008899:exon1:c.T1210C:p.F404L	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9970603	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	24600243	12A2p6	cell line	sgMsh2	24600243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	157	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon23:c.A3565G:p.I1189V	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999952	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	25250558	12A2p6	cell line	sgMsh2	25250558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	182	0	0	NA	exonic	Ufl1	nonsynonymous SNV	"Ufl1:NM_001355512:exon19:c.A2294G:p.N765S,Ufl1:NM_026194:exon19:c.A2294G:p.N765S"	4qA3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999991	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	32644659	12A2p6	cell line	sgMsh2	32644659	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	59	0	0	NA	exonic	Casp8ap2	nonsynonymous SNV	"Casp8ap2:NM_001122978:exon8:c.C3731A:p.P1244H,Casp8ap2:NM_011997:exon8:c.C3731A:p.P1244H"	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9964023	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	32726846	12A2p6	cell line	sgMsh2	32726846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	173	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon52:c.G7904A:p.R2635Q	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999984	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	204	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9999998	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr4	34575043	12A2p6	cell line	sgMsh2	34575043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	125	0	0	NA	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon17:c.T1840C:p.Y614H,Orc3:NM_015824:exon17:c.T1843C:p.Y615H"	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999582	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	34806979	12A2p6	cell line	sgMsh2	34806979	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.383	84	0	0	NA	exonic	Zfp292	frameshift deletion	Zfp292:NM_013889:exon8:c.6079delA:p.S2027Vfs*25	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M2_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	171	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999981	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	141	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999858	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	34986066	12A2p6	cell line	sgMsh2	34986066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	101	0	0	NA	exonic	Mob3b	synonymous SNV	Mob3b:NM_178061:exon3:c.C471T:p.R157R	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997884	GGC	synonymous	NA	NA	NA	NA
M2_p20	chr4	39451094	12A2p6	cell line	sgMsh2	39451094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	89	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A299G:p.N100S	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995242	AAT	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr4	40260410	12A2p6	cell line	sgMsh2	40260410	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	204	0	0	NA	exonic	Topors	nonsynonymous SNV	Topors:NM_134097:exon3:c.T2873G:p.V958G	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.610631759	2	0.9999941	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	40691057	12A2p6	cell line	sgMsh2	40691057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	0	0	NA	exonic	Aptx	nonsynonymous SNV	"Aptx:NM_001025444:exon6:c.C661A:p.H221N,Aptx:NM_001025445:exon6:c.C484A:p.H162N,Aptx:NM_025545:exon6:c.C682A:p.H228N"	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999059	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	41015376	12A2p6	cell line	sgMsh2	41015376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	75	0	0	NA	exonic	Nfx1	synonymous SNV	Nfx1:NM_023739:exon16:c.A2580G:p.P860P	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.624615693	2	0.9536518	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	221	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.974214028	1	0.9999995	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	70	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2_p20	chr4	41499201	12A2p6	cell line	sgMsh2	41499201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	75	0	0	NA	exonic	Myorg	nonsynonymous SNV	Myorg:NM_001085515:exon2:c.A428G:p.H143R	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.969552717	1	0.9973092	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	42972413	12A2p6	cell line	sgMsh2	42972413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	83	0	0	NA	exonic	1700022I11Rik	nonsynonymous SNV	1700022I11Rik:NM_026088:exon2:c.A1745G:p.Q582R	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9992867	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	43443856	12A2p6	cell line	sgMsh2	43443856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	53	0	0	NA	exonic	Tesk1	nonsynonymous SNV	Tesk1:NM_011571:exon2:c.T278C:p.L93P	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.797084205	1	0.817761	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	129	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999681	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	45044856	12A2p6	cell line	sgMsh2	45044856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	92	0	0	NA	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378819:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378820:exon7:c.G1217A:p.R406H,Fbxo10:NM_001378821:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378822:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378823:exon7:c.G1217A:p.R406H"	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996115	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	294	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr4	47030747	12A2p6	cell line	sgMsh2	47030747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	17	0	0	NA	exonic	Anks6	nonsynonymous SNV	"Anks6:NM_001024136:exon10:c.G1849T:p.A617S,Anks6:NM_001356426:exon11:c.G2053T:p.A685S"	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9418551	GCT	nonsynonymous	TGGC	13	GCTGGTGGCTGGC	NA
M2_p20	chr4	48083317	12A2p6	cell line	sgMsh2	48083317	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	60	0	0	NA	exonic	Nr4a3	nonsynonymous SNV	Nr4a3:NM_015743:exon8:c.A1849G:p.I617V	4qB1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.98353665	1	0.9952741	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	52451316	12A2p6	cell line	sgMsh2	52451316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	159	0	0	NA	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon9:c.A959G:p.K320R,Smc2:NM_008017:exon9:c.A959G:p.K320R"	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999958	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M2_p20	chr4	52462984	12A2p6	cell line	sgMsh2	52462984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	272	0	0	NA	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon15:c.A1973G:p.D658G,Smc2:NM_008017:exon15:c.A1973G:p.D658G"	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	3.04E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	53038160	12A2p6	cell line	sgMsh2	53038160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	158	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon46:c.T6201G:p.F2067L	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999955	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	59	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9964023	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	174	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999985	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	56806063	12A2p6	cell line	sgMsh2	56806063	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	98	0	0	NA	exonic	Abitram	synonymous SNV	Abitram:NM_001081420:exon6:c.A474G:p.V158V	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997409	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	42	0	0	NA	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9887454	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	324	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.06E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	58002408	12A2p6	cell line	sgMsh2	58002408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	102	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon3:c.T181G:p.S61A	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998022	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	58373527	12A2p6	cell line	sgMsh2	58373527	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	135	0	0	NA	exonic	Musk	synonymous SNV	"Musk:NM_001037130:exon13:c.C2397T:p.H799H,Musk:NM_001037129:exon14:c.C2427T:p.H809H,Musk:NM_010944:exon14:c.C2421T:p.H807H,Musk:NM_001037128:exon15:c.C2451T:p.H817H,Musk:NM_001037127:exon16:c.C2496T:p.H832H"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999787	ACG	synonymous	NA	NA	NA	NA
M2_p20	chr4	58785009	12A2p6	cell line	sgMsh2	58785009	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	153	0	0	NA	exonic	Olfr267	frameshift deletion	Olfr267:NM_146920:exon1:c.712delT:p.S238Qfs*6	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chr4	58785683	12A2p6	cell line	sgMsh2	58785683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	33	0	0	NA	exonic	Olfr267	frameshift deletion	Olfr267:NM_146920:exon1:c.38delT:p.F13Sfs*1	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9983971	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	192	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999995	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	60137009	12A2p6	cell line	sgMsh2	60137009	G	A	SNV	Mutect2;MuSe	2	0.455	9	0	0	NA	exonic	Mup2	stopgain	"Mup2:NM_001286096:exon5:c.C346T:p.Q116X,Mup2:NM_001045550:exon6:c.C529T:p.Q177X,Mup2:NM_008647:exon6:c.C529T:p.Q177X"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.09535025	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	63079966	12A2p6	cell line	sgMsh2	63079966	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	69	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon3:c.C204T:p.D68D,Zfp618:NM_001369114:exon3:c.C204T:p.D68D,Zfp618:NM_001369115:exon3:c.C36T:p.D12D,Zfp618:NM_001369119:exon3:c.C36T:p.D12D,Zfp618:NM_028326:exon3:c.C204T:p.D68D,Zfp618:NM_028327:exon3:c.C204T:p.D68D,Zfp618:NM_001369116:exon4:c.C36T:p.D12D,Zfp618:NM_001369117:exon4:c.C36T:p.D12D,Zfp618:NM_001369118:exon4:c.C36T:p.D12D"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9981657	ACG	synonymous	NA	NA	NA	NA
M2_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	56	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9955978	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr4	63346071	12A2p6	cell line	sgMsh2	63346071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	307	0	0	NA	exonic	Orm1	nonsynonymous SNV	Orm1:NM_008768:exon4:c.A363G:p.I121M	4qB3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.19E-09	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	65261885	12A2p6	cell line	sgMsh2	65261885	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	55	0	0	NA	exonic	Pappa	synonymous SNV	Pappa:NM_021362:exon10:c.G2982A:p.G994G	4qC1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9952917	GGA	synonymous	GATGGG	12	GATGGGGATGGG	NA
M2_p20	chr4	65614741	12A2p6	cell line	sgMsh2	65614741	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	72	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.C1534A:p.L512I,Trim32:NM_053084:exon2:c.C1534A:p.L512I"	4qC1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985017	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	94	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996605	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr4	74311729	12A2p6	cell line	sgMsh2	74311729	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	228	0	0	NA	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon6:c.G537T:p.K179N,Kdm4c:NM_001172095:exon7:c.G813T:p.K271N,Kdm4c:NM_144787:exon7:c.G762T:p.K254N"	4qC3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	4.08E-08	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	171	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	76133171	12A2p6	cell line	sgMsh2	76133171	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	362	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon8:c.G844T:p.G282X,Ptprd:NM_001368993:exon8:c.G844T:p.G282X,Ptprd:NM_001352628:exon9:c.G856T:p.G286X,Ptprd:NM_001352629:exon9:c.G856T:p.G286X,Ptprd:NM_001352630:exon9:c.G856T:p.G286X,Ptprd:NM_001368991:exon19:c.G874T:p.G292X,Ptprd:NM_011211:exon19:c.G874T:p.G292X"	4qC3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.237726868	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	81385176	12A2p6	cell line	sgMsh2	81385176	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	170	0	0	NA	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305284:exon5:c.G524A:p.S175N,Mpdz:NM_001305286:exon5:c.G524A:p.S175N,Mpdz:NM_010820:exon5:c.G524A:p.S175N"	4qC3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.999998	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	228	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	4.08E-08	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9982853	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	86232625	12A2p6	cell line	sgMsh2	86232625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	234	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon9:c.A1019G:p.Y340C,Adamtsl1:NM_029967:exon9:c.A1019G:p.Y340C"	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	2.76E-08	TAC	nonsynonymous	ACT	8	ACTACTAC	NA
M2_p20	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	67	0	0	NA	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.997901	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	86874542	12A2p6	cell line	sgMsh2	86874542	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	46	0	0	NA	exonic	Acer2	nonsynonymous SNV	"Acer2:NM_001290541:exon1:c.T54A:p.D18E,Acer2:NM_001290543:exon1:c.T54A:p.D18E,Acer2:NM_139306:exon1:c.T54A:p.D18E"	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9913869	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	88571443	12A2p6	cell line	sgMsh2	88571443	A	G	SNV	Mutect2;Vardict	2	0.038	497	0	0	NA	exonic	Ifna14	nonsynonymous SNV	Ifna14:NM_206975:exon1:c.T356C:p.L119P	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.177129823	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	17	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9418551	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr4	95800575	12A2p6	cell line	sgMsh2	95800575	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	137	0	0	NA	exonic	Fggy	nonsynonymous SNV	"Fggy:NM_001113412:exon9:c.T925C:p.F309L,Fggy:NM_029347:exon9:c.T925C:p.F309L"	4qC5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.340275713	3	0.9987206	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	95844162	12A2p6	cell line	sgMsh2	95844162	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	86	0	0	NA	exonic	Fggy	synonymous SNV	Fggy:NM_001113412:exon13:c.G1389C:p.P463P	4qC5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.98353665	1	0.99905	CGC	synonymous	T	5	TTTTT	NA
M2_p20	chr4	96531808	12A2p6	cell line	sgMsh2	96531808	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	50	0	0	NA	exonic	Cyp2j6	synonymous SNV	Cyp2j6:NM_010008:exon5:c.C685T:p.L229L	4qC5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9934126	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr4	96659550	12A2p6	cell line	sgMsh2	96659550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	152	0	0	NA	exonic	Cyp2j5	nonsynonymous SNV	Cyp2j5:NM_010007:exon3:c.A454G:p.K152E	4qC5	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999932	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	98041653	12A2p6	cell line	sgMsh2	98041653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	90	0	0	NA	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon7:c.A1118G:p.H373R,Nfia:NM_010905:exon7:c.A1049G:p.H350R"	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995553	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	89	0	0	NA	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9995242	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	98771474	12A2p6	cell line	sgMsh2	98771474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	73	0	0	NA	exonic	Kank4	nonsynonymous SNV	Kank4:NM_172872:exon7:c.G2366T:p.R789M	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985994	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	217	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr4	100441716	12A2p6	cell line	sgMsh2	100441716	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	83	0	0	NA	exonic	Ror1	nonsynonymous SNV	Ror1:NM_013845:exon9:c.C2285T:p.S762L	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.862342561	1	0.9642762	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	101639399	12A2p6	cell line	sgMsh2	101639399	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	89	0	0	NA	exonic	Dnajc6	nonsynonymous SNV	"Dnajc6:NM_001164583:exon18:c.A2762C:p.K921T,Dnajc6:NM_001164584:exon18:c.A2672C:p.K891T,Dnajc6:NM_001355179:exon18:c.A2681C:p.K894T,Dnajc6:NM_001164585:exon19:c.A2558C:p.K853T,Dnajc6:NM_001355180:exon19:c.A2558C:p.K853T,Dnajc6:NM_198412:exon19:c.A2558C:p.K853T"	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.997520584	1	0.9994865	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	103050192	12A2p6	cell line	sgMsh2	103050192	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	187	0	0	NA	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon14:c.G1896A:p.T632T	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.153823268	3	1.00E-09	TCG	synonymous	NA	NA	NA	NA
M2_p20	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	169	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999979	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	122	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999488	TAG	synonymous	GTA	8	GTAGTAGT	NA
M2_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	268	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	3.67E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	203	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	109238966	12A2p6	cell line	sgMsh2	109238966	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	59	0	0	NA	exonic	Calr4	nonsynonymous SNV	"Calr4:NM_001033226:exon2:c.T340C:p.Y114H,Calr4:NM_001285895:exon3:c.T397C:p.Y133H,Calr4:NM_001285896:exon3:c.T19C:p.Y7H,Calr4:NM_001285897:exon3:c.T19C:p.Y7H,Calr4:NM_001285898:exon3:c.T19C:p.Y7H"	4qC7	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9964023	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	156	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999948	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	111936864	12A2p6	cell line	sgMsh2	111936864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	188	0	0	NA	exonic	Skint8	synonymous SNV	Skint8:NM_001100466:exon4:c.T450C:p.H150H	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999994	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	184	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999992	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr4	113477952	12A2p6	cell line	sgMsh2	113477952	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	92	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon58:c.G4319A:p.G1440D,Skint5:NM_001167876:exon59:c.G4382A:p.G1461D"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996115	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	113623739	12A2p6	cell line	sgMsh2	113623739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	270	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon38:c.A2874G:p.K958K,Skint5:NM_001167878:exon38:c.A2874G:p.K958K"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	3.34E-09	CTT	synonymous	T	5	TTTTT	NA
M2_p20	chr4	113940842	12A2p6	cell line	sgMsh2	113940842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	479	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon4:c.T501C:p.G167G,Skint5:NM_001167878:exon4:c.T501C:p.G167G"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	AAC	synonymous	AACC	8	AACCAACC	NA
M2_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	110	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998848	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.405	21	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	239	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	2.00E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	116553565	12A2p6	cell line	sgMsh2	116553565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	154	0	0	NA	exonic	Tmem69	synonymous SNV	Tmem69:NM_177670:exon3:c.A207G:p.P69P	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.769116338	2	0.5621323	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr4	116985759	12A2p6	cell line	sgMsh2	116985759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	216	0	0	NA	exonic	Zswim5	synonymous SNV	Zswim5:NM_001029912:exon13:c.A2700G:p.E900E	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.936923539	1	0.9999901	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr4	117044583	12A2p6	cell line	sgMsh2	117044583	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	107	0	0	NA	exonic	Eif2b3	frameshift deletion	"Eif2b3:NM_001111277:exon4:c.442delA:p.K150Nfs*57,Eif2b3:NM_175135:exon4:c.442delA:p.K150Nfs*57"	4qD1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M2_p20	chr4	117914336	12A2p6	cell line	sgMsh2	117914336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	45	0	0	NA	exonic	Ipo13	synonymous SNV	Ipo13:NM_146152:exon1:c.G36A:p.G12G	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9907907	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	22	0	0	NA	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.957888	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M2_p20	chr4	118830156	12A2p6	cell line	sgMsh2	118830156	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	358	0	0	NA	exonic	Olfr1333	nonsynonymous SNV	Olfr1333:NM_207157:exon1:c.T283A:p.F95I	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	127	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999634	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	46	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9913869	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	120098410	12A2p6	cell line	sgMsh2	120098410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A3922G:p.T1308A	4qD2.1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.918278294	1	0.9984564	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	79	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9990656	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	121044695	12A2p6	cell line	sgMsh2	121044695	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.549	27	0	0	NA	exonic	Col9a2	frameshift deletion	Col9a2:NM_007741:exon9:c.445delC:p.P150Qfs*31	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2_p20	chr4	121109149	12A2p6	cell line	sgMsh2	121109149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	108	0	0	NA	exonic	Tmco2	synonymous SNV	Tmco2:NM_001081312:exon1:c.A9G:p.T3T	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998681	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	336	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.03E-09	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	182	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999991	CAG	synonymous	GT	8	GTGTGTGT	NA
M2_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	144	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999884	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	109	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998767	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	124838383	12A2p6	cell line	sgMsh2	124838383	A	T	SNV	Mutect2;Vardict	2	0.034	188	0	0	NA	exonic	Mtf1	synonymous SNV	Mtf1:NM_008636:exon9:c.A1233T:p.G411G	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.158484579	3	1.00E-09	GAA	synonymous	NA	NA	NA	NA
M2_p20	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	103	0	0	NA	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998151	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	165	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	77	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9989306	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	125623529	12A2p6	cell line	sgMsh2	125623529	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	150	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon2:c.C164T:p.A55V	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.275017357	3	0.9999977	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	156	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999948	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	76	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.998856	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr4	126151857	12A2p6	cell line	sgMsh2	126151857	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	32	0	0	NA	exonic	Sh3d21	nonsynonymous SNV	"Sh3d21:NM_025856:exon10:c.G680A:p.S227N,Sh3d21:NM_001162533:exon14:c.G1028A:p.S343N"	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.969552717	1	0.9696294	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	126316682	12A2p6	cell line	sgMsh2	126316682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	47	0	0	NA	exonic	Adprhl2	nonsynonymous SNV	Adprhl2:NM_133883:exon6:c.A1004G:p.Y335C	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9919449	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	126371529	12A2p6	cell line	sgMsh2	126371529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	101	0	0	NA	exonic	Ago3	nonsynonymous SNV	Ago3:NM_153402:exon8:c.A968G:p.Y323C	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997884	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	128260354	12A2p6	cell line	sgMsh2	128260354	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.335	120	0	0	NA	exonic	Hmgb4	frameshift insertion	Hmgb4:NM_027036:exon1:c.419dupA:p.P141Afs*2	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GCT	frameshift	T	5	TTTTT	1
M2_p20	chr4	128480819	12A2p6	cell line	sgMsh2	128480819	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	112	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon39:c.A6011T:p.Y2004F	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998993	TAC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr4	128616823	12A2p6	cell line	sgMsh2	128616823	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	32	0	0	NA	exonic	Tlr12	nonsynonymous SNV	Tlr12:NM_205823:exon1:c.T1633G:p.L545V	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9781236	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	28	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9715299	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	79	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9990656	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	70	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9982853	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	129534642	12A2p6	cell line	sgMsh2	129534642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	206	0	0	NA	exonic	Hdac1	nonsynonymous SNV	Hdac1:NM_008228:exon2:c.A134G:p.Y45C	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	98	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M2_p20	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	195	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9999996	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr4	132704380	12A2p6	cell line	sgMsh2	132704380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	307	0	0	NA	exonic	Eya3	nonsynonymous SNV	"Eya3:NM_211357:exon10:c.T641C:p.V214A,Eya3:NM_210071:exon12:c.T971C:p.V324A,Eya3:NM_010166:exon13:c.T923C:p.V308A"	4qD2.3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.41019538	3	0.9625248	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	19	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9488776	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	152	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999932	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	134091189	12A2p6	cell line	sgMsh2	134091189	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	43	0	0	NA	exonic	Crybg2	frameshift deletion	Crybg2:NM_001162970:exon18:c.4255delG:p.G1420Afs*11	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2_p20	chr4	134228347	12A2p6	cell line	sgMsh2	134228347	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	29	0	0	NA	exonic	Cnksr1	nonsynonymous SNV	Cnksr1:NM_001081047:exon21:c.C2071A:p.P691T	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9733402	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	134352439	12A2p6	cell line	sgMsh2	134352439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	65	0	0	NA	exonic	Slc30a2	nonsynonymous SNV	"Slc30a2:NM_001039677:exon8:c.A1027G:p.K343E,Slc30a2:NM_001346578:exon8:c.A787G:p.K263E"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9975982	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	35	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9820643	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	56	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9955978	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	37	0	0	NA	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.984295	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	135967358	12A2p6	cell line	sgMsh2	135967358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.351	77	0	0	NA	exonic	Gale	frameshift deletion	Gale:NM_001356493:exon9:c.799delA:p.N267Tfs*165	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M2_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	110	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998848	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	137	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999814	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr4	138258291	12A2p6	cell line	sgMsh2	138258291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	38	0	0	NA	exonic	Sh2d5	nonsynonymous SNV	Sh2d5:NM_001099631:exon9:c.A1049G:p.Q350R	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9853057	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	71	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9983971	CGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.3	11	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9142164	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	55	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M2_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	54	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9949643	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	87	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9994555	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	140786600	12A2p6	cell line	sgMsh2	140786600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	79	0	0	NA	exonic	Padi3	nonsynonymous SNV	Padi3:NM_011060:exon16:c.T1796C:p.I599T	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.689874049	2	0.8166491	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	140994030	12A2p6	cell line	sgMsh2	140994030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	21	0	0	NA	exonic	Atp13a2	nonsynonymous SNV	"Atp13a2:NM_001164366:exon5:c.G430A:p.D144N,Atp13a2:NM_001379619:exon5:c.G430A:p.D144N,Atp13a2:NM_001379620:exon5:c.G430A:p.D144N,Atp13a2:NM_001379621:exon5:c.G430A:p.D144N,Atp13a2:NM_001379622:exon5:c.G430A:p.D144N,Atp13a2:NM_029097:exon5:c.G430A:p.D144N"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9550705	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	15	0	0	NA	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	2	1	1	0.9338748	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	62	0	0	NA	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9970603	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	41	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9879684	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	141642409	12A2p6	cell line	sgMsh2	141642409	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	72	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon3:c.C274A:p.R92R,Plekhm2:NM_001347237:exon3:c.C274A:p.R92R"	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985017	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr4	143132855	12A2p6	cell line	sgMsh2	143132855	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	159	0	0	NA	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.C3864A:p.S1288R,Prdm2:NM_001256380:exon8:c.C3864A:p.S1288R"	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999958	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	143697345	12A2p6	cell line	sgMsh2	143697345	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.328	308	0	0	NA	exonic	Pramel23	synonymous SNV	Pramel23:NM_001356572:exon4:c.C873A:p.T291T	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.18E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	245	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.36E-08	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr4	143850858	12A2p6	cell line	sgMsh2	143850858	T	C	SNV	Mutect2;Vardict	2	0.045	274	0	0	NA	exonic	Pramel27	nonsynonymous SNV	Pramel27:NM_177571:exon2:c.T209C:p.L70S	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	0.209759001	3	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	143852045	12A2p6	cell line	sgMsh2	143852045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	295	0	0	NA	exonic	Pramel27	nonsynonymous SNV	Pramel27:NM_177571:exon3:c.T874C:p.Y292H	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.43E-09	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	408	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	144159497	12A2p6	cell line	sgMsh2	144159497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	267	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.G530A:p.G177D	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	3.86E-09	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	144159524	12A2p6	cell line	sgMsh2	144159524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	259	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.T503C:p.V168A	4qE1	chr4-3172993-145315362	3	2	1	0.9	4.195180026	NA	1	1	1	5.91E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	147582915	12A2p6	cell line	sgMsh2	147582915	A	G	SNV	Mutect2;MuSe;Vardict	3	0.057	787	0	0	NA	exonic	Zfp985	nonsynonymous SNV	Zfp985:NM_001014397:exon6:c.A239G:p.Q80R	4qE1	chr4-145467622-147676356	4.89419349	3.89419349	1	0.9	4.195180026	NA	1	0.265694735	3	1	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	148156407	12A2p6	cell line	sgMsh2	148156407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	22	0	0	NA	exonic	Fbxo44	nonsynonymous SNV	"Fbxo44:NM_001161851:exon4:c.A476G:p.E159G,Fbxo44:NM_001355701:exon4:c.A476G:p.E159G,Fbxo44:NM_173401:exon4:c.A476G:p.E159G,Fbxo44:NM_001355702:exon5:c.A248G:p.E83G"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.957888	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	149385211	12A2p6	cell line	sgMsh2	149385211	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	176	0	0	NA	exonic	Ube4b	nonsynonymous SNV	Ube4b:NM_022022:exon4:c.A349G:p.M117V	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999987	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	150239504	12A2p6	cell line	sgMsh2	150239504	C	G	SNV	Mutect2;Vardict	2	0.047	389	0	0	NA	exonic	Eno1	nonsynonymous SNV	"Eno1:NM_001379127:exon2:c.C23G:p.A8G,Eno1:NM_001379128:exon2:c.C23G:p.A8G,Eno1:NM_023119:exon2:c.C23G:p.A8G"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	0.219081624	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	150470326	12A2p6	cell line	sgMsh2	150470326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	222	0	0	NA	exonic	Rere	synonymous SNV	Rere:NM_001085492:exon6:c.A660G:p.P220P	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr4	151143934	12A2p6	cell line	sgMsh2	151143934	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	47	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.G2440T:p.A814S	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	2	1	1	0.9919449	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	153384837	12A2p6	cell line	sgMsh2	153384837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	65	0	0	NA	exonic	Ajap1	nonsynonymous SNV	Ajap1:NM_001099299:exon4:c.G1135A:p.G379R	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9975982	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	154081548	12A2p6	cell line	sgMsh2	154081548	A	C	SNV	Mutect2;Vardict	2	0.429	5	0	0	NA	exonic	Trp73	nonsynonymous SNV	"Trp73:NM_001126330:exon2:c.T63G:p.S21R,Trp73:NM_001126331:exon2:c.T63G:p.S21R,Trp73:NM_011642:exon4:c.T186G:p.S62R"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	2	1	1	0.866483	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	60	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	2	1	1	0.9966365	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	106	0	0	NA	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.999849	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	155	0	0	NA	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999945	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	155815284	12A2p6	cell line	sgMsh2	155815284	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	75	0	0	NA	exonic	Ccnl2	nonsynonymous SNV	Ccnl2:NM_207678:exon4:c.T509G:p.L170R	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9987762	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	124	0	0	NA	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999552	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	177	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999988	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	3575654	12A2p6	cell line	sgMsh2	3575654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	178	0	0	NA	exonic	1700109H08Rik	synonymous SNV	1700109H08Rik:NM_029843:exon2:c.A90G:p.R30R	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.703857982	2	0.989639	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.669	213	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	350	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	1	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.75	120	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999414	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	57	0	0	NA	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.98353665	1	0.9943161	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	194	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.974214028	1	0.9999978	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr5	6771851	12A2p6	cell line	sgMsh2	6771851	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	508	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.G1211C:p.R404T	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.172468512	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	59	0	0	NA	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	1	0.9964023	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr5	13451191	12A2p6	cell line	sgMsh2	13451191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	187	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon2:c.G200A:p.S67N,Sema3a:NM_001243072:exon3:c.G200A:p.S67N,Sema3a:NM_001243073:exon3:c.G200A:p.S67N"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.974214028	1	0.9999966	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	13599338	12A2p6	cell line	sgMsh2	13599338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	215	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon17:c.A2054G:p.D685G,Sema3a:NM_001243072:exon18:c.A2054G:p.D685G,Sema3a:NM_001243073:exon18:c.A2054G:p.D685G"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.61529307	2	0.999996	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	204	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	14675275	12A2p6	cell line	sgMsh2	14675275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	78	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.T4146C:p.P1382P,Pclo:NM_011995:exon5:c.T4146C:p.P1382P"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	1	0.000999602	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	101	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	0.797084205	1	0.7984427	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	14790375	12A2p6	cell line	sgMsh2	14790375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	205	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon18:c.T14143C:p.L4715L,Pclo:NM_011995:exon18:c.T14143C:p.L4715L"	5qA1	chr5-3344373-14859185	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr5	16355580	12A2p6	cell line	sgMsh2	16355580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	82	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110846:exon28:c.A2358G:p.A786A,Cacna2d1:NM_009784:exon28:c.A2373G:p.A791A,Cacna2d1:NM_001110843:exon29:c.A2430G:p.A810A,Cacna2d1:NM_001110844:exon29:c.A2394G:p.A798A,Cacna2d1:NM_001110845:exon29:c.A2379G:p.A793A"	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.997520584	1	0.9991814	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.726	135	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999787	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	17682063	12A2p6	cell line	sgMsh2	17682063	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	168	0	0	NA	exonic	Sema3c	nonsynonymous SNV	Sema3c:NM_013657:exon11:c.C1111A:p.P371T	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999977	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.759	175	0	0	NA	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M2_p20	chr5	21375300	12A2p6	cell line	sgMsh2	21375300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	146	0	0	NA	exonic	Fgl2	synonymous SNV	Fgl2:NM_008013:exon2:c.A639G:p.G213G	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.251710802	3	0.9999995	GAA	synonymous	AGGA	8	AGGAAGGA	NA
M2_p20	chr5	21971920	12A2p6	cell line	sgMsh2	21971920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.642	352	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon38:c.A5747G:p.Y1916C	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.685	26	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9675441	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	70	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.913616983	1	0.986302	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	24400563	12A2p6	cell line	sgMsh2	24400563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	81	0	0	NA	exonic	Abcb8	synonymous SNV	Abcb8:NM_029020:exon3:c.C444T:p.P148P	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9991836	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	39	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9862522	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr5	24534147	12A2p6	cell line	sgMsh2	24534147	G	T	SNV	Mutect2;Vardict	2	0.049	129	0	0	NA	exonic	Asb10	nonsynonymous SNV	"Asb10:NM_001310476:exon4:c.C1133A:p.P378H,Asb10:NM_080444:exon4:c.C1178A:p.P393H"	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.228404246	3	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	51	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9938402	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.708	192	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	27842567	12A2p6	cell line	sgMsh2	27842567	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.687	117	0	0	NA	exonic	Htr5a	nonsynonymous SNV	Htr5a:NM_008314:exon1:c.G119A:p.R40Q	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999282	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	128	0	0	NA	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999658	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	88	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M2_p20	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	212	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M2_p20	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	208	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999998	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M2_p20	chr5	31190369	12A2p6	cell line	sgMsh2	31190369	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	176	0	0	NA	exonic	Eif2b4	nonsynonymous SNV	"Eif2b4:NM_001127356:exon8:c.G938A:p.R313Q,Eif2b4:NM_001127355:exon9:c.G938A:p.R313Q,Eif2b4:NM_010122:exon9:c.G878A:p.R293Q"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.969552717	1	0.9999915	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	31200481	12A2p6	cell line	sgMsh2	31200481	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.189	119	0	0	NA	exonic	Zfp513	nonsynonymous SNV	"Zfp513:NM_001177901:exon2:c.T547C:p.Y183H,Zfp513:NM_175311:exon3:c.T553C:p.Y185H"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.880987805	1	0.9916825	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	31247403	12A2p6	cell line	sgMsh2	31247403	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.598	226	0	0	NA	exonic	Nrbp1	frameshift insertion	"Nrbp1:NM_147201:exon8:c.724dupT:p.A244Cfs*67,Nrbp1:NM_001347326:exon9:c.748dupT:p.A252Cfs*67"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	NA	NA	ACT	frameshift	T	5	TTTTT	1
M2_p20	chr5	31251970	12A2p6	cell line	sgMsh2	31251970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	28	0	0	NA	exonic	Krtcap3	nonsynonymous SNV	"Krtcap3:NM_001363337:exon2:c.T80C:p.L27P,Krtcap3:NM_027221:exon2:c.T80C:p.L27P"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9715299	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.746	326	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	1.05E-09	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr5	32830652	12A2p6	cell line	sgMsh2	32830652	G	C	SNV	Mutect2;Vardict	2	0.02	300	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C1498G:p.R500G	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.093226223	3	1	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	213	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M2_p20	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	138	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.913616983	1	0.9989301	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	33778651	12A2p6	cell line	sgMsh2	33778651	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	143	0	0	NA	exonic	Letm1	nonsynonymous SNV	Letm1:NM_019694:exon2:c.G97A:p.A33T	5qB2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.312307846	3	0.9999066	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.894971739	1	0.9999565	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	35517523	12A2p6	cell line	sgMsh2	35517523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	16	0	0	NA	exonic	Cpz	synonymous SNV	Cpz:NM_153107:exon3:c.T381C:p.C127C	5qB2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9379943	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	79	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9990656	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	37313520	12A2p6	cell line	sgMsh2	37313520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	102	0	0	NA	exonic	Evc	nonsynonymous SNV	Evc:NM_021292:exon13:c.A1795G:p.T599A	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.741148471	2	0.6452265	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	38672453	12A2p6	cell line	sgMsh2	38672453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.623	197	0	0	NA	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.G2208T:p.E736D,Zfp518b:NM_001081144:exon4:c.G2208T:p.E736D"	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	41635905	12A2p6	cell line	sgMsh2	41635905	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.585	80	0	0	NA	exonic	Rab28	nonsynonymous SNV	"Rab28:NM_001310589:exon5:c.C396A:p.D132E,Rab28:NM_001310590:exon5:c.C396A:p.D132E,Rab28:NM_001310592:exon5:c.C165A:p.D55E,Rab28:NM_027295:exon5:c.C396A:p.D132E"	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9991266	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	44045543	12A2p6	cell line	sgMsh2	44045543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	310	0	0	NA	exonic	Prom1	nonsynonymous SNV	"Prom1:NM_001163578:exon5:c.A647G:p.N216S,Prom1:NM_001163581:exon5:c.A632G:p.N211S,Prom1:NM_001163582:exon5:c.A647G:p.N216S,Prom1:NM_001163583:exon5:c.A647G:p.N216S,Prom1:NM_001163584:exon5:c.A647G:p.N216S,Prom1:NM_001163585:exon6:c.A674G:p.N225S,Prom1:NM_008935:exon6:c.A647G:p.N216S,Prom1:NM_001163577:exon7:c.A674G:p.N225S"	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.461469803	2	0.9971868	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	48374400	12A2p6	cell line	sgMsh2	48374400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	238	0	0	NA	exonic	Pacrgl	synonymous SNV	Pacrgl:NM_025755:exon3:c.T69C:p.R23R	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	2.13E-08	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	172	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999983	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	57	0	0	NA	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9958841	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	305	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	1.22E-09	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	64926354	12A2p6	cell line	sgMsh2	64926354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	213	0	0	NA	exonic	Tlr1	synonymous SNV	"Tlr1:NM_030682:exon3:c.G879A:p.R293R,Tlr1:NM_001276445:exon4:c.G879A:p.R293R"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr5	65141405	12A2p6	cell line	sgMsh2	65141405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	189	0	0	NA	exonic	Klhl5	nonsynonymous SNV	"Klhl5:NM_001347355:exon2:c.A106G:p.I36V,Klhl5:NM_001359401:exon2:c.A526G:p.I176V,Klhl5:NM_175174:exon2:c.A526G:p.I176V"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999994	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	65630041	12A2p6	cell line	sgMsh2	65630041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	43	0	0	NA	exonic	Pds5a	nonsynonymous SNV	Pds5a:NM_001081321:exon23:c.A2517C:p.K839N	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.820390761	1	0.8668747	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.754	75	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9987762	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr5	66284195	12A2p6	cell line	sgMsh2	66284195	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.63	105	0	0	NA	exonic	Nsun7	frameshift deletion	"Nsun7:NM_027602:exon8:c.1206delT:p.L403Yfs*25,Nsun7:NM_001302833:exon9:c.1206delT:p.L403Yfs*25"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr5	66309142	12A2p6	cell line	sgMsh2	66309142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	177	0	0	NA	exonic	Apbb2	nonsynonymous SNV	"Apbb2:NM_001201416:exon5:c.A221G:p.K74R,Apbb2:NM_001201414:exon14:c.A1805G:p.K602R,Apbb2:NM_001201415:exon14:c.A1802G:p.K601R,Apbb2:NM_001310626:exon14:c.A1799G:p.K600R,Apbb2:NM_001201413:exon15:c.A1865G:p.K622R,Apbb2:NM_009686:exon16:c.A1871G:p.K624R"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.466131114	2	0.9830963	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.997520584	1	0.9962164	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	69579515	12A2p6	cell line	sgMsh2	69579515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	212	0	0	NA	exonic	Gnpda2	nonsynonymous SNV	"Gnpda2:NM_001038015:exon5:c.C587T:p.A196V,Gnpda2:NM_001347363:exon5:c.C581T:p.A194V,Gnpda2:NM_001359239:exon5:c.C587T:p.A196V"	5qC3.1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.922939606	1	0.9999667	AGC	nonsynonymous	CATC	8	CATCCATC	NA
M2_p20	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	278	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.98353665	1	7.62E-09	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr5	72667744	12A2p6	cell line	sgMsh2	72667744	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	124	0	0	NA	exonic	Nipal1	nonsynonymous SNV	Nipal1:NM_001081205:exon6:c.C779T:p.A260V	5qC3.2	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999552	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	74458548	12A2p6	cell line	sgMsh2	74458548	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	164	0	0	NA	exonic	Scfd2	nonsynonymous SNV	Scfd2:NM_178672:exon5:c.C1406A:p.P469H	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.999997	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	74571100	12A2p6	cell line	sgMsh2	74571100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	147	0	0	NA	exonic	Fip1l1	nonsynonymous SNV	"Fip1l1:NM_001159574:exon10:c.A745G:p.R249G,Fip1l1:NM_024183:exon10:c.A745G:p.R249G,Fip1l1:NM_001159573:exon11:c.A853G:p.R285G,Fip1l1:NM_001376965:exon11:c.A814G:p.R272G,Fip1l1:NM_001376964:exon12:c.A922G:p.R308G"	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999905	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	76230280	12A2p6	cell line	sgMsh2	76230280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.705	191	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1772C:p.L591P,Clock:NM_001289826:exon20:c.T1772C:p.L591P,Clock:NM_007715:exon20:c.T1772C:p.L591P"	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999995	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.764	137	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999814	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.795	130	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M2_p20	chr5	76621329	12A2p6	cell line	sgMsh2	76621329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.695	160	0	0	NA	exonic	Cep135	nonsynonymous SNV	Cep135:NM_199032:exon14:c.A1825G:p.T609A	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999961	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	151	0	0	NA	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	0.265694735	3	0.9999991	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	91	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9995843	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr5	81512563	12A2p6	cell line	sgMsh2	81512563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.628	307	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon6:c.C959T:p.S320F,Adgrl3:NM_001347371:exon7:c.C974T:p.S325F,Adgrl3:NM_001359826:exon7:c.C461T:p.S154F,Adgrl3:NM_001359833:exon7:c.C974T:p.S325F,Adgrl3:NM_001347368:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359830:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359831:exon8:c.C1178T:p.S393F,Adgrl3:NM_001359832:exon8:c.C1163T:p.S388F,Adgrl3:NM_001359834:exon8:c.C1163T:p.S388F,Adgrl3:NM_001347367:exon9:c.C1178T:p.S393F,Adgrl3:NM_001347369:exon9:c.C1178T:p.S393F,Adgrl3:NM_001359828:exon9:c.C1178T:p.S393F,Adgrl3:NM_198702:exon9:c.C1178T:p.S393F"	5qD	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	1.19E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	84081124	12A2p6	cell line	sgMsh2	84081124	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.641	217	0	0	NA	exonic	Epha5	synonymous SNV	Epha5:NM_007937:exon13:c.A2118C:p.V706V	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999999	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr5	86124410	12A2p6	cell line	sgMsh2	86124410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.67	149	0	0	NA	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon28:c.A2419G:p.T807A	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999917	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	86197602	12A2p6	cell line	sgMsh2	86197602	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.639	139	0	0	NA	exonic	Gnrhr	nonsynonymous SNV	"Gnrhr:NM_001310651:exon1:c.G224A:p.R75K,Gnrhr:NM_001310653:exon1:c.G224A:p.R75K,Gnrhr:NM_010323:exon1:c.G224A:p.R75K"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999837	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.71	129	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999681	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	87090972	12A2p6	cell line	sgMsh2	87090972	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	291	0	0	NA	exonic	Ugt2b36	nonsynonymous SNV	Ugt2b36:NM_001029867:exon2:c.T739G:p.L247V	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	1.57E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	216	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.724	132	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999739	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	195	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999996	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.723	198	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999997	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.725	192	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999995	AAC	synonymous	A	5	AAAAA	NA
M2_p20	chr5	90232380	12A2p6	cell line	sgMsh2	90232380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	137	0	0	NA	exonic	Ankrd17	nonsynonymous SNV	"Ankrd17:NM_198010:exon31:c.T6695C:p.M2232T,Ankrd17:NM_030886:exon32:c.T7448C:p.M2483T"	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999814	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.689	147	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-15714380-94221358	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999905	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	95342682	12A2p6	cell line	sgMsh2	95342682	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.712	125	0	0	NA	exonic	Pramel47	frameshift deletion	Pramel47:NM_001270456:exon5:c.1172delC:p.L392fs*0	5qE3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
M2_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	49	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9929556	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	159	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999958	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	125	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999582	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	313	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	1.13E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	273	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.988197962	1	6.81E-09	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr5	105480435	12A2p6	cell line	sgMsh2	105480435	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	134	0	0	NA	exonic	Lrrc8b	nonsynonymous SNV	Lrrc8b:NM_001033550:exon4:c.C646T:p.P216S	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999772	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.615	108	0	0	NA	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9998681	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr5	106634922	12A2p6	cell line	sgMsh2	106634922	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	270	0	0	NA	exonic	Zfp644	synonymous SNV	"Zfp644:NM_001363323:exon4:c.A3417G:p.R1139R,Zfp644:NM_001363320:exon5:c.A3492G:p.R1164R,Zfp644:NM_001363321:exon5:c.A3492G:p.R1164R,Zfp644:NM_001363322:exon5:c.A3459G:p.R1153R,Zfp644:NM_026856:exon5:c.A3492G:p.R1164R,Zfp644:NM_001363319:exon6:c.A3492G:p.R1164R,Zfp644:NM_001363318:exon8:c.A3492G:p.R1164R"	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.214420312	3	1.00E-09	TTC	synonymous	TCTT	8	TCTTTCTT	NA
M2_p20	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	156	0	0	NA	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999948	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.654	128	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999658	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	53	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.494098981	2	0.9064318	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	109215795	12A2p6	cell line	sgMsh2	109215795	A	C	SNV	Mutect2;Vardict	2	0.106	64	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon6:c.T2254G:p.S752A,Vmn2r14:NM_001384975:exon6:c.T2251G:p.S751A"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.494098981	2	0.9406246	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	109220383	12A2p6	cell line	sgMsh2	109220383	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	710	0	0	NA	exonic	Vmn2r14	nonsynonymous SNV	"Vmn2r14:NM_001104625:exon3:c.A742T:p.M248L,Vmn2r14:NM_001384975:exon3:c.A742T:p.M248L"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	109557524	12A2p6	cell line	sgMsh2	109557524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	90	0	0	NA	exonic	Crlf2	nonsynonymous SNV	"Crlf2:NM_001164735:exon2:c.A170G:p.E57G,Crlf2:NM_001310694:exon2:c.A164G:p.E55G,Crlf2:NM_016715:exon2:c.A170G:p.E57G"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9995553	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	110687849	12A2p6	cell line	sgMsh2	110687849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	157	0	0	NA	exonic	Ep400	synonymous SNV	"Ep400:NM_173066:exon30:c.A5793G:p.E1931E,Ep400:NM_029337:exon31:c.A5901G:p.E1967E"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.913616983	1	0.9994769	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr5	111224177	12A2p6	cell line	sgMsh2	111224177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	149	0	0	NA	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.T2491C:p.Y831H	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999917	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	111224354	12A2p6	cell line	sgMsh2	111224354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	93	0	0	NA	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.G2668A:p.A890T	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9996368	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	112251078	12A2p6	cell line	sgMsh2	112251078	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	87	0	0	NA	exonic	Cryba4	synonymous SNV	"Cryba4:NM_001312884:exon2:c.T60C:p.C20C,Cryba4:NM_021351:exon3:c.T99C:p.C33C"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.396211447	3	0.7731286	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	113076019	12A2p6	cell line	sgMsh2	113076019	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	53	0	0	NA	exonic	Crybb3	synonymous SNV	"Crybb3:NM_001159650:exon6:c.C523A:p.R175R,Crybb3:NM_001359006:exon6:c.C523A:p.R175R,Crybb3:NM_001359008:exon6:c.C523A:p.R175R,Crybb3:NM_021352:exon6:c.C523A:p.R175R,Crybb3:NM_001359004:exon7:c.C523A:p.R175R,Crybb3:NM_001359005:exon7:c.C523A:p.R175R,Crybb3:NM_001359007:exon7:c.C523A:p.R175R"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.797084205	1	0.817761	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr5	113095599	12A2p6	cell line	sgMsh2	113095599	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	52	0	0	NA	exonic	2900026A02Rik	nonsynonymous SNV	"2900026A02Rik:NM_001347397:exon4:c.G808A:p.D270N,2900026A02Rik:NM_172884:exon4:c.G577A:p.D193N,2900026A02Rik:NM_001375886:exon9:c.G4954A:p.D1652N"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9942402	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	113743132	12A2p6	cell line	sgMsh2	113743132	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.135	57	0	0	NA	exonic	Sart3	nonsynonymous SNV	"Sart3:NM_001356621:exon19:c.G2940C:p.K980N,Sart3:NM_001356623:exon19:c.G1719C:p.K573N,Sart3:NM_016926:exon19:c.G2886C:p.K962N"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.629277004	2	0.8593542	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	113819003	12A2p6	cell line	sgMsh2	113819003	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	43	0	0	NA	exonic	Selplg	nonsynonymous SNV	Selplg:NM_009151:exon2:c.G1241A:p.S414N	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9894727	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	116	0	0	NA	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999232	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr5	114769628	12A2p6	cell line	sgMsh2	114769628	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	110	0	0	NA	exonic	Git2	frameshift deletion	"Git2:NM_001077359:exon2:c.175delA:p.T59Pfs*27,Git2:NM_001077360:exon2:c.175delA:p.T59Pfs*27,Git2:NM_001347400:exon2:c.175delA:p.T59Pfs*27,Git2:NM_019834:exon2:c.175delA:p.T59Pfs*27"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr5	114823436	12A2p6	cell line	sgMsh2	114823436	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	19	0	0	NA	exonic	2610524H06Rik	nonsynonymous SNV	2610524H06Rik:NM_181075:exon1:c.T10G:p.L4V	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	1	0.9488776	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	115470836	12A2p6	cell line	sgMsh2	115470836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	178	0	0	NA	exonic	Pla2g1b	nonsynonymous SNV	"Pla2g1b:NM_001356586:exon2:c.T86C:p.M29T,Pla2g1b:NM_001356587:exon2:c.T89C:p.M30T,Pla2g1b:NM_011107:exon2:c.T89C:p.M30T"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.508082914	2	0.9997713	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.733	65	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9975982	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	87	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9994555	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	117867522	12A2p6	cell line	sgMsh2	117867522	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	70	0	0	NA	exonic	Nos1	synonymous SNV	Nos1:NM_008712:exon1:c.C306A:p.G102G	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.391550136	3	0.7439575	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	74	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9986907	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr5	119836935	12A2p6	cell line	sgMsh2	119836935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.662	89	0	0	NA	exonic	Tbx5	nonsynonymous SNV	Tbx5:NM_011537:exon2:c.T22C:p.F8L	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9995242	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	120494456	12A2p6	cell line	sgMsh2	120494456	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	60	0	0	NA	exonic	Plbd2	synonymous SNV	Plbd2:NM_023625:exon3:c.T480G:p.L160L	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.904294361	1	0.9760265	TAA	synonymous	NA	NA	NA	NA
M2_p20	chr5	121467865	12A2p6	cell line	sgMsh2	121467865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	0	0	NA	exonic	Tmem116	synonymous SNV	"Tmem116:NM_001161626:exon4:c.C171T:p.L57L,Tmem116:NM_001161627:exon4:c.C171T:p.L57L"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9968555	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr5	122764221	12A2p6	cell line	sgMsh2	122764221	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.665	19	0	0	NA	exonic	Camkk2	synonymous SNV	"Camkk2:NM_001199676:exon2:c.G24A:p.Q8Q,Camkk2:NM_145358:exon2:c.G24A:p.Q8Q"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9488776	GCT	synonymous	GGCT	8	GGCTGGCT	NA
M2_p20	chr5	123450104	12A2p6	cell line	sgMsh2	123450104	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	132	0	0	NA	exonic	Mlxip	nonsynonymous SNV	Mlxip:NM_133917:exon14:c.C2259A:p.H753Q	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.769116338	1	0.5049996	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.707	219	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	149	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999917	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	131	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999721	GTG	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	162	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999966	AAA	synonymous	NA	NA	NA	NA
M2_p20	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.679	135	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999787	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	130013984	12A2p6	cell line	sgMsh2	130013984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.681	111	0	0	NA	exonic	Asl	nonsynonymous SNV	Asl:NM_133768:exon10:c.A697G:p.T233A	5qG1.3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9998923	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	130101912	12A2p6	cell line	sgMsh2	130101912	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	144	0	0	NA	exonic	Tpst1	synonymous SNV	"Tpst1:NM_001130476:exon2:c.C222T:p.I74I,Tpst1:NM_013837:exon2:c.C222T:p.I74I"	5qG1.3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.820390761	1	0.9187119	TCG	synonymous	G	5	GGGGG	NA
M2_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	119	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	1	0.9999373	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	188	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	137113037	12A2p6	cell line	sgMsh2	137113037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	102	0	0	NA	exonic	Trim56	nonsynonymous SNV	Trim56:NM_201373:exon3:c.G1624A:p.A542T	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9998022	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	137433932	12A2p6	cell line	sgMsh2	137433932	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	56	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon35:c.G7102A:p.G2368R	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9955978	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	137645348	12A2p6	cell line	sgMsh2	137645348	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.25	15	0	0	NA	exonic	Irs3	nonsynonymous SNV	Irs3:NM_010571:exon1:c.G173A:p.R58H	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9338748	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	138183136	12A2p6	cell line	sgMsh2	138183136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.756	59	0	0	NA	exonic	Taf6	nonsynonymous SNV	"Taf6:NM_001356600:exon6:c.T533C:p.L178P,Taf6:NM_001356601:exon6:c.T533C:p.L178P,Taf6:NM_001356602:exon6:c.T533C:p.L178P,Taf6:NM_009315:exon6:c.T533C:p.L178P"	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9964023	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.669	199	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	139392899	12A2p6	cell line	sgMsh2	139392899	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	199	0	0	NA	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.G455A:p.G152E,Gpr146:NM_001362206:exon2:c.G455A:p.G152E,Gpr146:NM_030258:exon2:c.G455A:p.G152E"	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.261033424	3	6.58E-09	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	140524513	12A2p6	cell line	sgMsh2	140524513	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	64	0	0	NA	exonic	Chst12	nonsynonymous SNV	Chst12:NM_021528:exon2:c.C894G:p.S298R	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	2	1	1	0.9974308	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	143357854	12A2p6	cell line	sgMsh2	143357854	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.636	16	0	0	NA	exonic	Grid2ip	synonymous SNV	Grid2ip:NM_001159321:exon1:c.C304T:p.L102L	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9379943	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr5	144255827	12A2p6	cell line	sgMsh2	144255827	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.654	45	0	0	NA	exonic	Bri3	nonsynonymous SNV	"Bri3:NM_001163709:exon2:c.C148T:p.P50S,Bri3:NM_018772:exon2:c.C160T:p.P54S"	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9907907	CCC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr5	144750917	12A2p6	cell line	sgMsh2	144750917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	182	0	0	NA	exonic	Tmem130	nonsynonymous SNV	Tmem130:NM_177735:exon4:c.T608C:p.V203A	5qG2	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999991	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.662	272	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	3.04E-09	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	165	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.675890115	2	0.9966709	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr5	150541294	12A2p6	cell line	sgMsh2	150541294	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	189	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon11:c.A4522T:p.I1508F,Brca2:NM_009765:exon11:c.A4522T:p.I1508F"	5qG3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	0.619954382	2	0.9999703	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	150552328	12A2p6	cell line	sgMsh2	150552328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.697	144	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon16:c.A7502G:p.Q2501R,Brca2:NM_009765:exon16:c.A7502G:p.Q2501R"	5qG3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	3	1	1	0.9999884	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	150662086	12A2p6	cell line	sgMsh2	150662086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	220	0	0	NA	exonic	N4bp2l2	nonsynonymous SNV	"N4bp2l2:NM_001362416:exon2:c.A428G:p.D143G,N4bp2l2:NM_201369:exon2:c.A428G:p.D143G"	5qG3	chr5-95270364-151647482	4	3	1	0.9	4.195180026	NA	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.727	150	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M2_p20	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	248	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.927600917	1	0.9999949	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	3377251	12A2p6	cell line	sgMsh2	3377251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	169	0	0	NA	exonic	Samd9l	synonymous SNV	Samd9l:NM_010156:exon2:c.A9G:p.G3G	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.997765	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	145	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.759793716	2	0.6471851	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M2_p20	chr6	3692703	12A2p6	cell line	sgMsh2	3692703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	155	0	0	NA	exonic	Calcr	nonsynonymous SNV	"Calcr:NM_001042725:exon13:c.A1039G:p.T347A,Calcr:NM_001355192:exon13:c.A1039G:p.T347A,Calcr:NM_001377018:exon14:c.A1150G:p.T384A,Calcr:NM_007588:exon14:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999945	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	4518518	12A2p6	cell line	sgMsh2	4518518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	112	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon13:c.A657G:p.A219A	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.484776359	2	0.9815593	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	171	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.867003872	1	0.9951674	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	229	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	3.82E-08	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M2_p20	chr6	4689677	12A2p6	cell line	sgMsh2	4689677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	87	0	0	NA	exonic	Sgce	synonymous SNV	"Sgce:NM_001130189:exon8:c.T1128C:p.S376S,Sgce:NM_001130191:exon8:c.T1128C:p.S376S,Sgce:NM_001130190:exon9:c.T1155C:p.S385S,Sgce:NM_011360:exon9:c.T1155C:p.S385S,Sgce:NM_001130188:exon10:c.T1263C:p.S421S"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9833126	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	4691568	12A2p6	cell line	sgMsh2	4691568	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	81	0	0	NA	exonic	Sgce	stopgain	"Sgce:NM_001130189:exon7:c.G898T:p.E300X,Sgce:NM_001130190:exon7:c.G898T:p.E300X,Sgce:NM_001130191:exon7:c.G898T:p.E300X,Sgce:NM_011360:exon7:c.G898T:p.E300X,Sgce:NM_001130188:exon8:c.G1006T:p.E336X"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9991836	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	340	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.680551426	2	0.9999976	TGC	synonymous	NA	NA	NA	NA
M2_p20	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	55	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9952917	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	129	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.936923539	1	0.9994685	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	280	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	2	0.9999997	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	181	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.251710802	3	1.34E-08	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M2_p20	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	158	0	0	NA	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999955	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr6	7871250	12A2p6	cell line	sgMsh2	7871250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	88	0	0	NA	exonic	C1galt1	nonsynonymous SNV	C1galt1:NM_052993:exon4:c.A1085G:p.N362S	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.8624408	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	8083742	12A2p6	cell line	sgMsh2	8083742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	342	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon21:c.G1714T:p.G572W	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.9571635	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1806	216	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.841832792	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr6	12330984	12A2p6	cell line	sgMsh2	12330984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	196	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon21:c.T4158C:p.G1386G	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.48943767	2	0.9991513	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr6	12352020	12A2p6	cell line	sgMsh2	12352020	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	164	0	0	NA	exonic	Thsd7a	stopgain	Thsd7a:NM_001164805:exon14:c.G3175T:p.G1059X	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999514	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	83	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.815729449	1	0.8763446	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M2_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	360	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	154	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.769116338	2	0.5621323	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	14718380	12A2p6	cell line	sgMsh2	14718380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	485	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.T2534C:p.V845A	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.508082914	2	1.31E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	14718753	12A2p6	cell line	sgMsh2	14718753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	205	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.G2161A:p.A721T	6qA1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999998	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	311	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.699196671	2	0.9999382	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	17527242	12A2p6	cell line	sgMsh2	17527242	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	107	0	0	NA	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon6:c.T1691G:p.V564G	6qA2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.321630469	3	0.9980345	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.141	218	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.657244871	2	0.9999225	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	18866607	12A2p6	cell line	sgMsh2	18866607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	142	0	0	NA	exonic	Ankrd7	nonsynonymous SNV	"Ankrd7:NM_001167757:exon1:c.A125G:p.H42R,Ankrd7:NM_029202:exon1:c.A125G:p.H42R"	6qA2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.829713383	1	0.9464264	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	174	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.969552717	1	0.9999905	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.64	333	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	3	1	1	1.03E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M2_p20	chr6	23000054	12A2p6	cell line	sgMsh2	23000054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	181	0	0	NA	exonic	Ptprz1	synonymous SNV	"Ptprz1:NM_001081306:exon12:c.A2142G:p.T714T,Ptprz1:NM_001311064:exon12:c.A2142G:p.T714T,Ptprz1:NM_001361349:exon12:c.A2142G:p.T714T,Ptprz1:NM_011219:exon12:c.A2142G:p.T714T"	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.999999	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	23001661	12A2p6	cell line	sgMsh2	23001661	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	321	0	0	NA	exonic	Ptprz1	nonsynonymous SNV	"Ptprz1:NM_001081306:exon12:c.C3749T:p.P1250L,Ptprz1:NM_011219:exon12:c.C3749T:p.P1250L"	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.07E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	23626800	12A2p6	cell line	sgMsh2	23626800	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	204	0	0	NA	exonic	Cadps2	nonsynonymous SNV	"Cadps2:NM_001252105:exon3:c.C488A:p.A163D,Cadps2:NM_001252106:exon3:c.C488A:p.A163D,Cadps2:NM_001252107:exon3:c.C488A:p.A163D,Cadps2:NM_001252108:exon3:c.C488A:p.A163D,Cadps2:NM_001252109:exon3:c.C488A:p.A163D,Cadps2:NM_001252110:exon3:c.C488A:p.A163D,Cadps2:NM_153163:exon3:c.C488A:p.A163D"	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	0.9998282	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	226	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	4.66E-08	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	23654646	12A2p6	cell line	sgMsh2	23654646	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	187	0	0	NA	exonic	Rnf148	nonsynonymous SNV	Rnf148:NM_027754:exon1:c.T350C:p.L117P	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	5.02E-09	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	24089045	12A2p6	cell line	sgMsh2	24089045	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	164	0	0	NA	exonic	Slc13a1	nonsynonymous SNV	Slc13a1:NM_019481:exon15:c.T1705C:p.F569L	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.340275713	3	0.9996908	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	24150744	12A2p6	cell line	sgMsh2	24150744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	283	0	0	NA	exonic	Slc13a1	nonsynonymous SNV	Slc13a1:NM_019481:exon2:c.T194C:p.M65T	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	24565963	12A2p6	cell line	sgMsh2	24565963	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	202	0	0	NA	exonic	Asb15	nonsynonymous SNV	Asb15:NM_080847:exon8:c.A914T:p.Q305L	6qA3.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	2	0.9999656	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	28883359	12A2p6	cell line	sgMsh2	28883359	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	110	0	0	NA	exonic	Snd1	nonsynonymous SNV	Snd1:NM_019776:exon19:c.G2212A:p.A738T	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.806406827	1	0.8465349	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	188	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.731825849	2	0.9564811	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.206	49	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.986277	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	30748942	12A2p6	cell line	sgMsh2	30748942	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	203	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon24:c.C2531T:p.A844V	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.578002581	2	0.9999993	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	183	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.773777649	2	0.5770417	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	344	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.9858368	AAC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr6	33305370	12A2p6	cell line	sgMsh2	33305370	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	380	0	0	NA	exonic	Exoc4	nonsynonymous SNV	"Exoc4:NM_001347089:exon5:c.T742C:p.Y248H,Exoc4:NM_009148:exon5:c.T742C:p.Y248H"	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.237726868	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	34129199	12A2p6	cell line	sgMsh2	34129199	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	363	0	0	NA	exonic	Lrguk	nonsynonymous SNV	Lrguk:NM_028886:exon18:c.A2158G:p.K720E	6qA3.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.433501936	2	0.7178325	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	34872820	12A2p6	cell line	sgMsh2	34872820	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	136	0	0	NA	exonic	Tmem140	synonymous SNV	"Tmem140:NM_197986:exon2:c.C270A:p.A90A,Tmem140:NM_001368365:exon3:c.C270A:p.A90A"	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999801	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr6	35198973	12A2p6	cell line	sgMsh2	35198973	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	149	0	0	NA	exonic	Nup205	nonsynonymous SNV	Nup205:NM_027513:exon11:c.T1611A:p.N537K	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.349598335	3	0.9984863	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	35244733	12A2p6	cell line	sgMsh2	35244733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	362	0	0	NA	exonic	Nup205	nonsynonymous SNV	Nup205:NM_027513:exon40:c.A5599G:p.I1867V	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.591986515	2	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	208	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	35280331	12A2p6	cell line	sgMsh2	35280331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon8:c.A871G:p.I291V	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9998848	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	37362427	12A2p6	cell line	sgMsh2	37362427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	81	0	0	NA	exonic	Creb3l2	nonsynonymous SNV	Creb3l2:NM_178661:exon4:c.A514C:p.T172P	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.8770315	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	222	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	311	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9998564	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	79	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9507879	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M2_p20	chr6	39493105	12A2p6	cell line	sgMsh2	39493105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	105	0	0	NA	exonic	Dennd2a	nonsynonymous SNV	Dennd2a:NM_172477:exon8:c.A1652C:p.E551A	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.633938315	2	0.9895919	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	39574305	12A2p6	cell line	sgMsh2	39574305	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	51	0	0	NA	exonic	Adck2	nonsynonymous SNV	Adck2:NM_178873:exon1:c.T5C:p.V2A	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.610631759	2	0.8535494	GTG	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr6	39574941	12A2p6	cell line	sgMsh2	39574941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	80	0	0	NA	exonic	Adck2	nonsynonymous SNV	Adck2:NM_178873:exon1:c.T641C:p.V214A	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.578002581	2	0.9896433	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	310	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	3.12E-08	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	255	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9997688	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	267	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.7201967	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr6	40897547	12A2p6	cell line	sgMsh2	40897547	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	158	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon4:c.T194A:p.I65N	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	2	0.9450379	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	628	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.77843896	2	0.9826989	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	200	0	0	NA	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999997	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	41627413	12A2p6	cell line	sgMsh2	41627413	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	167	0	0	NA	exonic	Trpv6	nonsynonymous SNV	Trpv6:NM_022413:exon3:c.G408C:p.M136I	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.9999756	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	42216021	12A2p6	cell line	sgMsh2	42216021	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	283	0	0	NA	exonic	Tas2r144	nonsynonymous SNV	Tas2r144:NM_001001453:exon1:c.G694T:p.G232C	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.7117464	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	182	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.839036005	1	0.9782332	ACG	synonymous	NA	NA	NA	NA
M2_p20	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	0	0	NA	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999928	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	105	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9880071	ATG	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999986	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	479	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.9376206	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	207	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999945	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	47095552	12A2p6	cell line	sgMsh2	47095552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	116	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon19:c.A3053C:p.N1018T	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999232	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	148	0	0	NA	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.9998761	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	43	0	0	NA	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	0.9874795	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	114	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.5769515	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	129	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.745809782	2	0.7275909	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	55	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9952917	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	110	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.946246161	1	0.9991111	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	48571804	12A2p6	cell line	sgMsh2	48571804	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	193	0	0	NA	exonic	Rarres2	synonymous SNV	"Rarres2:NM_001347167:exon3:c.G264A:p.E88E,Rarres2:NM_001347168:exon3:c.G264A:p.E88E,Rarres2:NM_027852:exon3:c.G264A:p.E88E"	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999996	ACT	synonymous	NA	NA	NA	NA
M2_p20	chr6	48753258	12A2p6	cell line	sgMsh2	48753258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	145	0	0	NA	exonic	Gimap5	nonsynonymous SNV	Gimap5:NM_175035:exon3:c.A761C:p.K254T	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.8550551	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	114	0	0	NA	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999121	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	51457240	12A2p6	cell line	sgMsh2	51457240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	434	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.T779C:p.V260A	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.745809782	2	0.9992391	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	53068567	12A2p6	cell line	sgMsh2	53068567	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.375	12	0	0	NA	exonic	Jazf1	nonsynonymous SNV	Jazf1:NM_173406:exon1:c.A1G:p.M1V	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9196884	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	221	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.9999987	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	56703370	12A2p6	cell line	sgMsh2	56703370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	336	0	0	NA	exonic	Lsm5	nonsynonymous SNV	Lsm5:NM_025520:exon2:c.T86C:p.V29A	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.03E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	56726278	12A2p6	cell line	sgMsh2	56726278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	357	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon4:c.A328G:p.T110A	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.624615693	2	2.16E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	646	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.792422894	2	0.7464517	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57003086	12A2p6	cell line	sgMsh2	57003086	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.018	648	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T732G:p.D244E	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.083903601	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57137820	12A2p6	cell line	sgMsh2	57137820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	397	0	0	NA	exonic	Vmn1r11	synonymous SNV	Vmn1r11:NM_053233:exon1:c.G468A:p.Q156Q	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.275017357	3	1	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr6	57159297	12A2p6	cell line	sgMsh2	57159297	A	-	Deletion	Mutect2;Vardict	2	0.055	329	0	0	NA	exonic	Vmn1r12	frameshift deletion	Vmn1r12:NM_001101579:exon1:c.378delA:p.K128Nfs*2	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.256372113	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr6	57233824	12A2p6	cell line	sgMsh2	57233824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	246	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A386G:p.Y129C	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.820390761	1	0.9517434	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	426	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.7718594	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57390454	12A2p6	cell line	sgMsh2	57390454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	352	0	0	NA	exonic	Vmn1r18	nonsynonymous SNV	Vmn1r18:NM_134181:exon1:c.G114T:p.M38I	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.671228804	2	0.9999995	CCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	210	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9646035	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	235	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.946246161	1	0.999998	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	180	0	0	NA	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.85768125	NA	NA	TAA	frameshift	NA	NA	NA	-1
M2_p20	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.187	186	0	0	NA	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9974029	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	365	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.908955672	1	0.9999996	GTA	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr6	58009056	12A2p6	cell line	sgMsh2	58009056	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	580	0	0	NA	exonic	Vmn1r26	synonymous SNV	Vmn1r26:NM_134172:exon1:c.C147T:p.H49H	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	1	7.69E-09	TGT	synonymous	NA	NA	NA	NA
M2_p20	chr6	59003477	12A2p6	cell line	sgMsh2	59003477	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	377	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon2:c.C59T:p.P20L	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.48943767	2	0.9999979	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	237	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	2.27E-08	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	171	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.783100271	1	0.5910314	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr6	60987081	12A2p6	cell line	sgMsh2	60987081	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	117	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon7:c.G3063T:p.Q1021H,Mmrn1:NM_027613:exon7:c.G3066T:p.Q1022H"	6qB3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.335614402	3	0.9973261	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	64275843	12A2p6	cell line	sgMsh2	64275843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	249	0	0	NA	exonic	Grid2	frameshift deletion	"Grid2:NM_001370966:exon9:c.1294delA:p.K433Nfs*13,Grid2:NM_008167:exon9:c.1294delA:p.K433Nfs*13"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.969552717	NA	NA	CAA	frameshift	GACA	8	GACAGACA	-1
M2_p20	chr6	65096789	12A2p6	cell line	sgMsh2	65096789	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.019	433	0	0	NA	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001253392:exon14:c.A1474G:p.S492G,Smarcad1:NM_001355250:exon16:c.A2029G:p.S677G,Smarcad1:NM_007958:exon16:c.A2029G:p.S677G"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.088564912	3	1	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	65096792	12A2p6	cell line	sgMsh2	65096792	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	437	0	0	NA	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001253392:exon14:c.A1477G:p.T493A,Smarcad1:NM_001355250:exon16:c.A2032G:p.T678A,Smarcad1:NM_007958:exon16:c.A2032G:p.T678A"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.848358627	1	0.9997385	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	65107887	12A2p6	cell line	sgMsh2	65107887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	470	0	0	NA	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001253392:exon18:c.A1961G:p.Q654R,Smarcad1:NM_001355250:exon20:c.A2516G:p.Q839R,Smarcad1:NM_007958:exon20:c.A2516G:p.Q839R"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.316969157	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	65441209	12A2p6	cell line	sgMsh2	65441209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	exonic	Qrfprl	synonymous SNV	Qrfprl:NM_175524:exon2:c.C360T:p.V120V	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.708519293	2	0.998164	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr6	65869223	12A2p6	cell line	sgMsh2	65869223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	265	0	0	NA	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon4:c.A343G:p.I115V,Prdm5:NM_027547:exon8:c.A895G:p.I299V"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	2	0.9972154	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.073	483	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.340275713	3	1.02E-09	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	515	0	0	NA	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.559357337	2	1	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	66732159	12A2p6	cell line	sgMsh2	66732159	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	691	0	0	NA	exonic	Vmn1r37	nonsynonymous SNV	Vmn1r37:NM_134165:exon1:c.G768A:p.M256I	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9999996	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	66777013	12A2p6	cell line	sgMsh2	66777013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	522	0	0	NA	exonic	Vmn1r38	synonymous SNV	Vmn1r38:NM_134168:exon1:c.T118C:p.L40L	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.559357337	2	1	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	149	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999917	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	292	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.61529307	2	2.69E-08	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	71510261	12A2p6	cell line	sgMsh2	71510261	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	576	0	0	NA	exonic	Rnf103	nonsynonymous SNV	"Rnf103:NM_001308303:exon4:c.T1353G:p.N451K,Rnf103:NM_009543:exon4:c.T1875G:p.N625K"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.167807201	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	253	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	0.9999682	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	71620176	12A2p6	cell line	sgMsh2	71620176	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	278	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362200:exon7:c.T716A:p.I239N,Kdm3a:NM_173001:exon7:c.T716A:p.I239N,Kdm3a:NM_001038695:exon8:c.T716A:p.I239N"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.731825849	2	0.9952928	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	119	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.894971739	1	0.9953035	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	111	0	0	NA	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.946246161	1	0.9991536	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.9989491	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	167	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9882725	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	135	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999787	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	103	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.36824358	3	0.9612724	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	83050323	12A2p6	cell line	sgMsh2	83050323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	357	0	0	NA	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon12:c.A1958G:p.Y653C	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	83154572	12A2p6	cell line	sgMsh2	83154572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	0	0	NA	exonic	Wdr54	synonymous SNV	"Wdr54:NM_023790:exon6:c.T462C:p.I154I,Wdr54:NM_001362119:exon7:c.T462C:p.I154I,Wdr54:NM_001362120:exon7:c.T261C:p.I87I"	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9980378	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	122	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.843697316	1	0.964005	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	83311325	12A2p6	cell line	sgMsh2	83311325	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	232	0	0	NA	exonic	Mthfd2	synonymous SNV	Mthfd2:NM_008638:exon4:c.T447C:p.S149S	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.89639	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	83675875	12A2p6	cell line	sgMsh2	83675875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	343	0	0	NA	exonic	Cd207	nonsynonymous SNV	Cd207:NM_144943:exon3:c.T272C:p.I91T	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.825052072	1	0.9831084	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	127	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	0.9996884	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	84113612	12A2p6	cell line	sgMsh2	84113612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	219	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon27:c.T2906C:p.V969A,Dysf:NM_001077694:exon28:c.T2996C:p.V999A,Dysf:NM_021469:exon28:c.T2999C:p.V1000A"	6qC3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	80	0	0	NA	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9991266	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	302	0	0	NA	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.689874049	2	0.9999676	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr6	86946876	12A2p6	cell line	sgMsh2	86946876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	307	0	0	NA	exonic	Aak1	synonymous SNV	"Aak1:NM_001040106:exon7:c.T754C:p.L252L,Aak1:NM_001378654:exon7:c.T754C:p.L252L,Aak1:NM_001378655:exon7:c.T754C:p.L252L,Aak1:NM_177762:exon7:c.T754C:p.L252L,Aak1:NM_001378652:exon8:c.T754C:p.L252L"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.601309137	2	3.20E-09	GTT	synonymous	TGTT	8	TGTTTGTT	NA
M2_p20	chr6	87470565	12A2p6	cell line	sgMsh2	87470565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	172	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon5:c.A488G:p.Q163R,Arhgap25:NM_001037727:exon6:c.A755G:p.Q252R,Arhgap25:NM_175476:exon6:c.A677G:p.Q226R"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999983	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	87646187	12A2p6	cell line	sgMsh2	87646187	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	262	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon7:c.A972T:p.A324A,Aplf:NM_001372332:exon7:c.A972T:p.A324A,Aplf:NM_024251:exon7:c.A909T:p.A303A"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	5.01E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	169	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999979	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M2_p20	chr6	87890251	12A2p6	cell line	sgMsh2	87890251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	216	0	0	NA	exonic	Copg1	nonsynonymous SNV	"Copg1:NM_017477:exon5:c.T305C:p.V102A,Copg1:NM_201244:exon5:c.T305C:p.V102A"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.806406827	1	0.854947	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	150	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.550034714	2	0.9999695	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	67	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.8567739	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	473	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9999249	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	91504694	12A2p6	cell line	sgMsh2	91504694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	105	0	0	NA	exonic	Xpc	nonsynonymous SNV	Xpc:NM_009531:exon6:c.A644G:p.Y215C	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9998385	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	193	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	3.13E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	73	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.755132405	1	0.5964637	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	91989173	12A2p6	cell line	sgMsh2	91989173	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	66	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.T2386G:p.F796V	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.992859273	1	0.9973585	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	92074160	12A2p6	cell line	sgMsh2	92074160	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.164	130	0	0	NA	exonic	Fgd5	synonymous SNV	Fgd5:NM_172731:exon20:c.G4416A:p.E1472E	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.5411389	AGG	synonymous	AGG	9	AGGAGGAGG	NA
M2_p20	chr6	92420260	12A2p6	cell line	sgMsh2	92420260	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	100	0	0	NA	exonic	Prickle2	synonymous SNV	"Prickle2:NM_001134459:exon5:c.A483G:p.V161V,Prickle2:NM_001134460:exon5:c.A483G:p.V161V,Prickle2:NM_001134461:exon5:c.A483G:p.V161V,Prickle2:NM_001081146:exon6:c.A651G:p.V217V"	6qD1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.452147181	2	0.849353	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr6	97176199	12A2p6	cell line	sgMsh2	97176199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	192	0	0	NA	exonic	Tmf1	synonymous SNV	Tmf1:NM_001081111:exon2:c.T912C:p.D304D	6qD3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999995	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	203	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.759793716	2	0.8183088	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	103641995	12A2p6	cell line	sgMsh2	103641995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	321	0	0	NA	exonic	Chl1	stopgain	Chl1:NM_007697:exon3:c.A25T:p.R9X	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.9999968	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	103649615	12A2p6	cell line	sgMsh2	103649615	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	239	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon5:c.G323A:p.R108H	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.191113757	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	103691582	12A2p6	cell line	sgMsh2	103691582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	115	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon12:c.A1275C:p.I425I	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	1	0.9808152	TAA	synonymous	A	5	AAAAA	NA
M2_p20	chr6	103706542	12A2p6	cell line	sgMsh2	103706542	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	211	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon19:c.T2328G:p.T776T	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.894971739	1	0.9997336	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	103711184	12A2p6	cell line	sgMsh2	103711184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	133	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon23:c.C2984A:p.A995E	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.494098981	2	0.9951858	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	104728282	12A2p6	cell line	sgMsh2	104728282	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	276	0	0	NA	exonic	Cntn6	stopgain	Cntn6:NM_017383:exon7:c.T675A:p.Y225X	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.624615693	2	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	148	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	0.9999381	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr6	106778021	12A2p6	cell line	sgMsh2	106778021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	368	0	0	NA	exonic	Trnt1	nonsynonymous SNV	"Trnt1:NM_001242358:exon6:c.A712G:p.I238V,Trnt1:NM_027296:exon6:c.A712G:p.I238V"	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.885649116	1	0.9999935	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	135	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999787	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	141	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999858	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	118	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.77843896	1	0.6392123	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	111495835	12A2p6	cell line	sgMsh2	111495835	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	205	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.C2634T:p.H878H,Grm7:NM_177328:exon9:c.C2634T:p.H878H"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999998	ACA	synonymous	NA	NA	NA	NA
M2_p20	chr6	113240331	12A2p6	cell line	sgMsh2	113240331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	200	0	0	NA	exonic	Mtmr14	nonsynonymous SNV	"Mtmr14:NM_001362182:exon2:c.A203G:p.Y68C,Mtmr14:NM_026849:exon2:c.A203G:p.Y68C"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.741148471	2	0.9397682	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	219	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.8914439	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	60	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9966365	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	113491669	12A2p6	cell line	sgMsh2	113491669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	195	0	0	NA	exonic	Creld1	synonymous SNV	Creld1:NM_133930:exon7:c.T750C:p.G250G	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.815729449	1	0.9159987	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	514	0	0	NA	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.974214028	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	196	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999997	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	286	0	0	NA	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	1	0.9999594	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	118	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.978875339	1	0.9998411	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	115441520	12A2p6	cell line	sgMsh2	115441520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	210	0	0	NA	exonic	Pparg	synonymous SNV	"Pparg:NM_011146:exon3:c.A339G:p.P113P,Pparg:NM_001127330:exon4:c.A249G:p.P83P,Pparg:NM_001308352:exon4:c.A249G:p.P83P,Pparg:NM_001308354:exon4:c.A249G:p.P83P"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.843697316	1	0.9887604	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr6	115490061	12A2p6	cell line	sgMsh2	115490061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	155	0	0	NA	exonic	Pparg	nonsynonymous SNV	"Pparg:NM_011146:exon7:c.A1384G:p.K462E,Pparg:NM_001127330:exon8:c.A1294G:p.K432E,Pparg:NM_001308352:exon8:c.A1294G:p.K432E,Pparg:NM_001308354:exon8:c.A1294G:p.K432E"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.475453736	2	0.988555	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	115617607	12A2p6	cell line	sgMsh2	115617607	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	110	0	0	NA	exonic	Mkrn2	nonsynonymous SNV	Mkrn2:NM_023290:exon8:c.T1127C:p.V376A	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	1	0.9788444	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	115955846	12A2p6	cell line	sgMsh2	115955846	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon36:c.C5672T:p.A1891V	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.978875339	1	0.9989727	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	116022230	12A2p6	cell line	sgMsh2	116022230	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	973	0	0	NA	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon4:c.G847T:p.V283L,Tmcc1:NM_177412:exon6:c.G1807T:p.V603L"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.200436379	3	1	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	116022253	12A2p6	cell line	sgMsh2	116022253	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	1002	0	0	NA	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon4:c.T824C:p.V275A,Tmcc1:NM_177412:exon6:c.T1784C:p.V595A"	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.135178023	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	116043426	12A2p6	cell line	sgMsh2	116043426	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	200	0	0	NA	exonic	Tmcc1	frameshift deletion	Tmcc1:NM_177412:exon4:c.944delA:p.K315Rfs*10	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.741148471	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	80	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.89963305	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M2_p20	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	295	0	0	NA	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.85768125	1	0.9991348	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	99	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
M2_p20	chr6	118627557	12A2p6	cell line	sgMsh2	118627557	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	74	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon27:c.A3149G:p.N1050S,Cacna1c:NM_001159533:exon32:c.A3959G:p.N1320S,Cacna1c:NM_001159534:exon32:c.A3959G:p.N1320S,Cacna1c:NM_001159535:exon32:c.A3953G:p.N1318S,Cacna1c:NM_001255997:exon32:c.A4049G:p.N1350S,Cacna1c:NM_001255999:exon32:c.A4049G:p.N1350S,Cacna1c:NM_001256000:exon32:c.A4001G:p.N1334S,Cacna1c:NM_001256001:exon32:c.A4010G:p.N1337S,Cacna1c:NM_009781:exon32:c.A4049G:p.N1350S,Cacna1c:NM_001255998:exon33:c.A4124G:p.N1375S,Cacna1c:NM_001256002:exon33:c.A4208G:p.N1403S"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9560548	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	119	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999373	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M2_p20	chr6	119236797	12A2p6	cell line	sgMsh2	119236797	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	123	0	0	NA	exonic	Cacna2d4	nonsynonymous SNV	"Cacna2d4:NM_001033382:exon1:c.T92G:p.I31S,Cacna2d4:NM_001347427:exon1:c.T92G:p.I31S"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.340275713	3	0.9973306	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	119320562	12A2p6	cell line	sgMsh2	119320562	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	37	0	0	NA	exonic	Lrtm2	nonsynonymous SNV	"Lrtm2:NM_001172207:exon4:c.T517C:p.S173P,Lrtm2:NM_172492:exon4:c.T517C:p.S173P"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.894971739	1	0.9423883	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	120216594	12A2p6	cell line	sgMsh2	120216594	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	111	0	0	NA	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon12:c.T1170A:p.N390K	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.57334127	2	0.9992116	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	119	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.848358627	1	0.9688985	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	121036514	12A2p6	cell line	sgMsh2	121036514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	611	0	0	NA	exonic	Mical3	nonsynonymous SNV	"Mical3:NM_001270475:exon7:c.G907A:p.A303T,Mical3:NM_153396:exon7:c.G907A:p.A303T"	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.48943767	2	1.86E-09	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	126	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M2_p20	chr6	121884382	12A2p6	cell line	sgMsh2	121884382	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	523	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon30:c.G3961A:p.E1321K	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.755132405	2	0.9993272	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	122079760	12A2p6	cell line	sgMsh2	122079760	C	A	SNV	Mutect2;Vardict	2	0.078	116	0	0	NA	exonic	Mug2	synonymous SNV	Mug2:NM_008646:exon28:c.C3663A:p.S1221S	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.363582269	3	0.9819768	CCA	synonymous	NA	NA	NA	NA
M2_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	232	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.825052072	1	0.9637062	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	659	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	1	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	789	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	869	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.181791134	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	123839871	12A2p6	cell line	sgMsh2	123839871	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	413	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon3:c.G750T:p.K250N	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	1.16E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	123851989	12A2p6	cell line	sgMsh2	123851989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	274	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon2:c.T325C:p.F109L	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.750471093	2	0.9703284	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	69	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.913616983	1	0.9857835	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	47	0	0	NA	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9468448	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	124854888	12A2p6	cell line	sgMsh2	124854888	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	154	0	0	NA	exonic	P3h3	synonymous SNV	P3h3:NM_013534:exon4:c.C933A:p.L311L	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9945623	GGA	synonymous	NA	NA	NA	NA
M2_p20	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	76	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.890310428	NA	NA	CGG	frameshift	NA	NA	NA	-1
M2_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	157	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.7740181	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	125171509	12A2p6	cell line	sgMsh2	125171509	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon25:c.T3158A:p.L1053Q	6qF2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999178	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	125343044	12A2p6	cell line	sgMsh2	125343044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	210	0	0	NA	exonic	Scnn1a	synonymous SNV	Scnn1a:NM_011324:exon10:c.C1605A:p.S535S	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999999	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	109	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.904294361	1	0.9954817	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M2_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	358	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	1.03E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126101978	12A2p6	cell line	sgMsh2	126101978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	200	0	0	NA	exonic	Ntf3	synonymous SNV	"Ntf3:NM_001164035:exon2:c.A564G:p.T188T,Ntf3:NM_008742:exon2:c.A525G:p.T175T,Ntf3:NM_001164034:exon3:c.A564G:p.T188T"	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.494098981	2	0.9995655	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	143	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999876	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126534143	12A2p6	cell line	sgMsh2	126534143	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	192	0	0	NA	exonic	Kcna5	nonsynonymous SNV	Kcna5:NM_145983:exon1:c.G1021A:p.A341T	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.806406827	1	0.8530765	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126534398	12A2p6	cell line	sgMsh2	126534398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	155	0	0	NA	exonic	Kcna5	nonsynonymous SNV	Kcna5:NM_145983:exon1:c.A766G:p.I256V	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.675890115	2	0.9948152	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	197	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9996996	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126739338	12A2p6	cell line	sgMsh2	126739338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	78	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T587C:p.L196S	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.568679959	2	0.9899763	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	231	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.475453736	2	0.9982994	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	126966936	12A2p6	cell line	sgMsh2	126966936	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	271	0	0	NA	exonic	D6Wsu163e	nonsynonymous SNV	D6Wsu163e:NM_138594:exon11:c.C1294T:p.L432F	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.992859273	1	5.26E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	59	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9964023	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	128521121	12A2p6	cell line	sgMsh2	128521121	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	150	0	0	NA	exonic	Pzp	frameshift deletion	Pzp:NM_007376:exon7:c.732delT:p.P245Lfs*1	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.820390761	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr6	128570047	12A2p6	cell line	sgMsh2	128570047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	180	0	0	NA	exonic	A2ml1	nonsynonymous SNV	A2ml1:NM_001001179:exon11:c.T1118C:p.L373P	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.172468512	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	319	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.610631759	2	3.65E-09	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr6	132311988	12A2p6	cell line	sgMsh2	132311988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	823	0	0	NA	exonic	Prpmp5	nonsynonymous SNV	Prpmp5:NM_001024705:exon3:c.T872C:p.L291P	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.666567493	2	1	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	132361425	12A2p6	cell line	sgMsh2	132361425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	869	0	0	NA	exonic	Gm8882	nonsynonymous SNV	Gm8882:NM_001177588:exon3:c.T829C:p.Y277H	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.927600917	1	1	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	144	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999884	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr6	132657502	12A2p6	cell line	sgMsh2	132657502	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	312	0	0	NA	exonic	Tas2r120	synonymous SNV	Tas2r120:NM_207023:exon1:c.A546T:p.I182I	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.28433998	3	1.01E-09	TAA	synonymous	NA	NA	NA	NA
M2_p20	chr6	132700551	12A2p6	cell line	sgMsh2	132700551	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	101	0	0	NA	exonic	Tas2r121	nonsynonymous SNV	Tas2r121:NM_207024:exon1:c.G457A:p.E153K	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.414856691	3	0.6052681	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	132737275	12A2p6	cell line	sgMsh2	132737275	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	204	0	0	NA	exonic	Tas2r115	synonymous SNV	Tas2r115:NM_207020:exon1:c.C712T:p.L238L	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.908955672	1	0.9998763	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr6	132755465	12A2p6	cell line	sgMsh2	132755465	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	264	0	0	NA	exonic	Tas2r124	nonsynonymous SNV	Tas2r124:NM_207026:exon1:c.C736T:p.L246F	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.722503227	2	0.9971355	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	278	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	2.36E-09	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr6	132980084	12A2p6	cell line	sgMsh2	132980084	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	136	0	0	NA	exonic	Tas2r109	synonymous SNV	Tas2r109:NM_207017:exon1:c.C882T:p.D294D	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.769116338	2	0.5072642	TGT	synonymous	NA	NA	NA	NA
M2_p20	chr6	132980190	12A2p6	cell line	sgMsh2	132980190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	257	0	0	NA	exonic	Tas2r109	nonsynonymous SNV	Tas2r109:NM_207017:exon1:c.A776G:p.Q259R	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	2	0.9976894	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	133054936	12A2p6	cell line	sgMsh2	133054936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	106	0	0	NA	exonic	Tas2r140	synonymous SNV	Tas2r140:NM_021562:exon1:c.T858C:p.N286N	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.773777649	1	0.6247278	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	2	0.5175765	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	102	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	1	0.9752723	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	96	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.862342561	1	0.9722138	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	180	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.764455027	2	0.7023921	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	206	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.839036005	1	0.9835533	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	135078672	12A2p6	cell line	sgMsh2	135078672	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.15	87	0	0	NA	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon2:c.T116G:p.V39G	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.699196671	2	0.8221109	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	135309899	12A2p6	cell line	sgMsh2	135309899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	0	0	NA	exonic	Pbp2	nonsynonymous SNV	Pbp2:NM_029595:exon1:c.A449G:p.K150R	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.974214028	1	0.9994149	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	156	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999948	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	136329362	12A2p6	cell line	sgMsh2	136329362	A	G	SNV	Mutect2;Vardict	2	0.114	155	0	0	NA	exonic	Eif4a3l1	nonsynonymous SNV	Eif4a3l1:NM_001142734:exon2:c.A820G:p.T274A	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.53138947	2	0.9999192	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	191	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.8875596	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	136781411	12A2p6	cell line	sgMsh2	136781411	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	163	0	0	NA	exonic	Gucy2c	stopgain	"Gucy2c:NM_001127318:exon1:c.C196T:p.R66X,Gucy2c:NM_145067:exon1:c.C196T:p.R66X"	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.335614402	3	0.9997895	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	136840018	12A2p6	cell line	sgMsh2	136840018	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	126	0	0	NA	exonic	BC049715	synonymous SNV	BC049715:NM_178776:exon3:c.G255A:p.P85P	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999609	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.22	245	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.36E-08	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M2_p20	chr6	137739756	12A2p6	cell line	sgMsh2	137739756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	211	0	0	NA	exonic	Strap	nonsynonymous SNV	Strap:NM_011499:exon4:c.A332C:p.D111A	6qG1	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.787761583	1	0.6013176	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	233	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.894971739	1	0.999866	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr6	140528592	12A2p6	cell line	sgMsh2	140528592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	315	0	0	NA	exonic	Plekha5	nonsynonymous SNV	Plekha5:NM_144920:exon7:c.G572A:p.R191H	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.11E-09	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	153	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.717841915	2	0.9502263	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	141817719	12A2p6	cell line	sgMsh2	141817719	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	167	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon11:c.G1270T:p.G424X,Slco1a4:NM_030687:exon12:c.G1270T:p.G424X"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.69453536	2	0.9911144	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	481	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	1.12E-09	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	340	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	1	1	1.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	142376811	12A2p6	cell line	sgMsh2	142376811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	128	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon4:c.T364C:p.C122R,Recql:NM_001204907:exon4:c.T364C:p.C122R,Recql:NM_001355511:exon4:c.T364C:p.C122R,Recql:NM_023042:exon4:c.T364C:p.C122R"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999658	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	310	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.671228804	2	0.9999968	CCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.381	326	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M2_p20	chr6	143083209	12A2p6	cell line	sgMsh2	143083209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	367	0	0	NA	exonic	C2cd5	synonymous SNV	"C2cd5:NM_001109688:exon4:c.T303C:p.A101A,C2cd5:NM_001362113:exon4:c.T303C:p.A101A,C2cd5:NM_001362114:exon4:c.T303C:p.A101A,C2cd5:NM_001362115:exon4:c.T303C:p.A101A,C2cd5:NM_001362116:exon4:c.T303C:p.A101A,C2cd5:NM_001362117:exon4:c.T303C:p.A101A,C2cd5:NM_029081:exon4:c.T303C:p.A101A,C2cd5:NM_029897:exon4:c.T303C:p.A101A"	6qG3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9955757	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	106	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.480115047	2	0.9708724	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	146806453	12A2p6	cell line	sgMsh2	146806453	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.183	261	0	0	NA	exonic	Arntl2	synonymous SNV	"Arntl2:NM_001289679:exon2:c.A72G:p.T24T,Arntl2:NM_001289680:exon2:c.A72G:p.T24T,Arntl2:NM_172309:exon2:c.A72G:p.T24T"	6qG3	chr6-3373003-148425959	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9975454	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	315	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M2_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	247	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr6	149327692	12A2p6	cell line	sgMsh2	149327692	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	204	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A2235C:p.E745D,Resf1:NM_026054:exon3:c.A2235C:p.E745D,Resf1:NM_001289661:exon4:c.A2235C:p.E745D"	6qG3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	154	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-3716106	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999941	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	97	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-3716106	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997228	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	4242170	12A2p6	cell line	sgMsh2	4242170	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	0	0	NA	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon6:c.A812T:p.H271L	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985017	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	463	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	190	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	21	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9550705	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M2_p20	chr7	4993360	12A2p6	cell line	sgMsh2	4993360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	31	0	0	NA	exonic	Zfp579	synonymous SNV	Zfp579:NM_026741:exon2:c.A1551G:p.P517P	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9766306	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	44	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9901535	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	164	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.999997	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	504	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	1	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.333	10	0	0	NA	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9082715	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	346	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	1.01E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	6570274	12A2p6	cell line	sgMsh2	6570274	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	189	0	0	NA	exonic	Olfr1350	synonymous SNV	Olfr1350:NM_146389:exon1:c.C282A:p.A94A	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999994	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	137	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999814	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	174	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999985	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	155	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999945	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	6711236	12A2p6	cell line	sgMsh2	6711236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	187	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.A986G:p.E329G	7qA1	chr7-3895077-7214089	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	7384735	12A2p6	cell line	sgMsh2	7384735	A	T	SNV	Mutect2;MuSe;Vardict	3	0.062	1690	0	0	NA	exonic	Vmn2r31	nonsynonymous SNV	"Vmn2r31:NM_001105062:exon6:c.T1836A:p.H612Q,Vmn2r31:NM_001385037:exon6:c.T1686A:p.H562Q"	7qA1	chr7-7312117-7673010	8.94077339	6.94077339	2	0.9	4.195180026	NA	1	0.289001291	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	9014988	12A2p6	cell line	sgMsh2	9014988	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.465	176	0	0	NA	exonic	Vmn2r39	frameshift deletion	"Vmn2r39:NM_001105071:exon6:c.2348delT:p.F783Sfs*52,Vmn2r39:NM_001385077:exon6:c.2300delT:p.F767Sfs*52"	7qA1	chr7-8138478-9928805	4.89419349	3.89419349	1	0.9	4.195180026	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chr7	9215974	12A2p6	cell line	sgMsh2	9215974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	539	0	0	NA	exonic	Vmn2r37	synonymous SNV	Vmn2r37:NM_009489:exon4:c.G1410A:p.V470V	7qA1	chr7-8138478-9928805	4.89419349	3.89419349	1	0.9	4.195180026	NA	1	1	1	1	TCA	synonymous	NA	NA	NA	NA
M2_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-9991672-11518135	3.28843393	2.28843393	1	0.9	4.195180026	NA	1	1	1	0.9999178	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	10714750	12A2p6	cell line	sgMsh2	10714750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	127	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A879G:p.I293M,Nlrp4b:NM_172481:exon4:c.A879G:p.I293M"	7qA1	chr7-9991672-11518135	3.28843393	2.28843393	1	0.9	4.195180026	NA	1	1	1	0.9999634	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	10714874	12A2p6	cell line	sgMsh2	10714874	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	175	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C1003A:p.P335T,Nlrp4b:NM_172481:exon4:c.C1003A:p.P335T"	7qA1	chr7-9991672-11518135	3.28843393	2.28843393	1	0.9	4.195180026	NA	1	0.200436379	3	1.13E-09	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	10725840	12A2p6	cell line	sgMsh2	10725840	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	120	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon8:c.C2368A:p.L790I,Nlrp4b:NM_172481:exon8:c.C2368A:p.L790I"	7qA1	chr7-9991672-11518135	3.28843393	2.28843393	1	0.9	4.195180026	NA	1	1	1	0.9999414	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	10747860	12A2p6	cell line	sgMsh2	10747860	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	118	0	0	NA	exonic	Vmn1r71	stopgain	Vmn1r71:NM_145848:exon1:c.G900A:p.W300X	7qA1	chr7-9991672-11518135	3.28843393	2.28843393	1	0.9	4.195180026	NA	1	1	1	0.9999329	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	182	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999991	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M2_p20	chr7	12416332	12A2p6	cell line	sgMsh2	12416332	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	195	0	0	NA	exonic	Zfp551	synonymous SNV	Zfp551:NM_001033820:exon4:c.C1149T:p.H383H	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999996	GGT	synonymous	NA	NA	NA	NA
M2_p20	chr7	12925528	12A2p6	cell line	sgMsh2	12925528	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	168	0	0	NA	exonic	Rps5	nonsynonymous SNV	Rps5:NM_009095:exon3:c.A245C:p.N82T	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.302985224	3	0.9999932	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	12925578	12A2p6	cell line	sgMsh2	12925578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	153	0	0	NA	exonic	Rps5	nonsynonymous SNV	Rps5:NM_009095:exon3:c.A295C:p.I99L	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.950907472	1	0.9999153	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	13008258	12A2p6	cell line	sgMsh2	13008258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	99	0	0	NA	exonic	Zbtb45	synonymous SNV	"Zbtb45:NM_001024699:exon2:c.T72C:p.N24N,Zbtb45:NM_001360833:exon2:c.T72C:p.N24N"	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997578	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	73	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985994	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	81	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9991836	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.4	14	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9294724	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	16112593	12A2p6	cell line	sgMsh2	16112593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	169	0	0	NA	exonic	Napa	nonsynonymous SNV	Napa:NM_025898:exon4:c.A305C:p.N102T	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.498760292	2	0.9991588	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	16563211	12A2p6	cell line	sgMsh2	16563211	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	112	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1928G:p.N643S	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.363582269	3	0.9789808	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	16563385	12A2p6	cell line	sgMsh2	16563385	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	227	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1754T:p.N585I	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.191113757	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	24	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9630197	TGA	synonymous	NA	NA	NA	NA
M2_p20	chr7	17009894	12A2p6	cell line	sgMsh2	17009894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	60	0	0	NA	exonic	Ppp5c	nonsynonymous SNV	Ppp5c:NM_011155:exon4:c.A614G:p.H205R	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9966365	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	313	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	1.13E-09	ACA	synonymous	NA	NA	NA	NA
M2_p20	chr7	18353458	12A2p6	cell line	sgMsh2	18353458	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	479	0	0	NA	exonic	Psg18	nonsynonymous SNV	Psg18:NM_011963:exon2:c.G274A:p.G92R	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.135178023	3	1	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.075	373	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.349598335	3	3.93E-08	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	19014606	12A2p6	cell line	sgMsh2	19014606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	95	0	0	NA	exonic	Foxa3	synonymous SNV	Foxa3:NM_008260:exon2:c.C594T:p.S198S	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.811068138	1	0.8642874	AGC	synonymous	NA	NA	NA	NA
M2_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	43	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9894727	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	19295767	12A2p6	cell line	sgMsh2	19295767	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	0	0	NA	exonic	Rtn2	synonymous SNV	"Rtn2:NM_001025364:exon7:c.C588G:p.V196V,Rtn2:NM_013648:exon10:c.C1389G:p.V463V"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9942402	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	19416872	12A2p6	cell line	sgMsh2	19416872	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	91	0	0	NA	exonic	Ckm	nonsynonymous SNV	Ckm:NM_007710:exon5:c.C635A:p.P212H	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995843	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	19433452	12A2p6	cell line	sgMsh2	19433452	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	31	0	0	NA	exonic	Mark4	nonsynonymous SNV	"Mark4:NM_001368427:exon13:c.G1361A:p.G454D,Mark4:NM_172279:exon13:c.G1361A:p.G454D"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9766306	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	19811121	12A2p6	cell line	sgMsh2	19811121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	99	0	0	NA	exonic	Bcl3	nonsynonymous SNV	Bcl3:NM_033601:exon6:c.G812A:p.G271D	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	2	1	1	0.9997578	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.293	200	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	87	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9994555	CGC	synonymous	C	5	CCCCC	NA
M2_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	47	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9919449	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	25464879	12A2p6	cell line	sgMsh2	25464879	A	G	SNV	Mutect2;Vardict	2	0.044	203	0	0	NA	exonic	Ceacam1	nonsynonymous SNV	"Ceacam1:NM_001039187:exon5:c.T823C:p.S275P,Ceacam1:NM_001039186:exon7:c.T1363C:p.S455P"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.20509769	3	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	33	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.9795232	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr7	25714350	12A2p6	cell line	sgMsh2	25714350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	37	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	Ccdc97:NM_001368381:exon4:c.G905A:p.C302Y	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	2	1	1	0.984295	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	20	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	1	1	0.952071	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M2_p20	chr7	25761437	12A2p6	cell line	sgMsh2	25761437	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	113	0	0	NA	exonic	Axl	nonsynonymous SNV	"Axl:NM_001190975:exon16:c.G1855C:p.A619P,Axl:NM_001190974:exon17:c.G2119C:p.A707P,Axl:NM_009465:exon18:c.G2146C:p.A716P"	7qA3	chr7-11669330-25950707	3	2	1	0.9	4.195180026	NA	1	0.312307846	3	0.9992665	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	141	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999858	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	54	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9949643	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M2_p20	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	42	0	0	NA	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9887454	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28142376	12A2p6	cell line	sgMsh2	28142376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	172	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon6:c.T1735C:p.Y579H	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999983	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28306837	12A2p6	cell line	sgMsh2	28306837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	25	0	0	NA	exonic	Timm50	nonsynonymous SNV	Timm50:NM_025616:exon9:c.T838G:p.S280A	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.98353665	1	0.9602653	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	119	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999373	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28370385	12A2p6	cell line	sgMsh2	28370385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	37	0	0	NA	exonic	Plekhg2	synonymous SNV	"Plekhg2:NM_001083912:exon3:c.A219G:p.P73P,Plekhg2:NM_001290542:exon3:c.A219G:p.P73P,Plekhg2:NM_138752:exon3:c.A222G:p.P74P"	7qA3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.984295	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	28509090	12A2p6	cell line	sgMsh2	28509090	G	A	SNV	Mutect2;Strelka2	2	0.2	57	0	0	NA	exonic	Ifnl2	synonymous SNV	Ifnl2:NM_001024673:exon4:c.C435T:p.S145S	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.932262228	1	0.9845441	GGC	synonymous	GGC	9	GGCGGCGGC	NA
M2_p20	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.997520584	1	0.990432	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	39	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	1	0.9862522	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28837716	12A2p6	cell line	sgMsh2	28837716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	105	0	0	NA	exonic	Lgals4;Lgals6	nonsynonymous SNV	Lgals4:NM_010706:exon4:c.T440C:p.I147T	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998385	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	104	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998272	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	116	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999232	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9750382	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M2_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	17	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9418551	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	83	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9992867	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	58	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	1	0.9961519	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	181	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.999999	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	182	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr7	34353671	12A2p6	cell line	sgMsh2	34353671	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	54	0	0	NA	exonic	Lsm14a	synonymous SNV	"Lsm14a:NM_001360656:exon6:c.C778T:p.L260L,Lsm14a:NM_001360654:exon7:c.C955T:p.L319L,Lsm14a:NM_001360655:exon7:c.C955T:p.L319L,Lsm14a:NM_025948:exon7:c.C955T:p.L319L"	7qB1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9949643	AGT	synonymous	AGTTTA	12	AGTTTAAGTTTA	NA
M2_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	69	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9981657	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	84	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	1	0.9993332	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	53	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9946143	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr7	35614504	12A2p6	cell line	sgMsh2	35614504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	196	0	0	NA	exonic	Ankrd27	nonsynonymous SNV	"Ankrd27:NM_001358876:exon14:c.A1259G:p.D420G,Ankrd27:NM_145633:exon14:c.A1259G:p.D420G"	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.988197962	1	0.9999992	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	128	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999658	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M2_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	191	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	79	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9990656	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	38522150	12A2p6	cell line	sgMsh2	38522150	C	T	SNV	Mutect2;Vardict	2	0.083	181	0	0	NA	exonic	Gm5591	nonsynonymous SNV	Gm5591:NM_001013810:exon2:c.G494A:p.G165E	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.386888825	3	0.9839704	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	39536530	12A2p6	cell line	sgMsh2	39536530	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.221	35	0	0	NA	exonic	Zfp619	synonymous SNV	Zfp619:NM_001004139:exon4:c.T1983A:p.T661T	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9820643	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	39536612	12A2p6	cell line	sgMsh2	39536612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	74	0	0	NA	exonic	Zfp619	nonsynonymous SNV	Zfp619:NM_001004139:exon4:c.A2065G:p.T689A	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9986907	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	41288930	12A2p6	cell line	sgMsh2	41288930	G	A	SNV	Mutect2;Vardict	2	0.071	169	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon3:c.G1635A:p.R545R	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.330953091	3	0.999904	GGA	synonymous	NA	NA	NA	NA
M2_p20	chr7	41288965	12A2p6	cell line	sgMsh2	41288965	A	T	SNV	Mutect2;Vardict	2	0.049	186	0	0	NA	exonic	Gm5592	nonsynonymous SNV	Gm5592:NM_001033782:exon3:c.A1670T:p.K557M	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.228404246	3	1.61E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	41427691	12A2p6	cell line	sgMsh2	41427691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	310	0	0	NA	exonic	Vmn2r57	synonymous SNV	Vmn2r57:NM_177764:exon3:c.T1050C:p.A350A	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.16E-09	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	42136332	12A2p6	cell line	sgMsh2	42136332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.T558C:p.L186L	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999997	TTT	synonymous	NA	NA	NA	NA
M2_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	590	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr7	42195631	12A2p6	cell line	sgMsh2	42195631	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	393	0	0	NA	exonic	Vmn2r60	nonsynonymous SNV	Vmn2r60:NM_001105057:exon6:c.G2417A:p.G806E	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	43528989	12A2p6	cell line	sgMsh2	43528989	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	80	0	0	NA	exonic	Cd33	nonsynonymous SNV	Cd33:NM_021293:exon6:c.A878C:p.K293T	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9991266	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	76	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.998856	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	96	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997034	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	44254085	12A2p6	cell line	sgMsh2	44254085	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	70	0	0	NA	exonic	Acp4	nonsynonymous SNV	Acp4:NM_001195034:exon8:c.T804G:p.N268K	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9982853	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	64	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.908955672	1	0.9810626	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	88	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.978875339	1	0.9990327	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	31	0	0	NA	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	1	0.9766306	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	120	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999414	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	45337484	12A2p6	cell line	sgMsh2	45337484	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.096	86	0	0	NA	exonic	Hrc	nonsynonymous SNV	Hrc:NM_010473:exon2:c.G1972A:p.E658K	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.447485869	2	1.00E-04	CGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	45355231	12A2p6	cell line	sgMsh2	45355231	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	97	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon11:c.C1305T:p.D435D	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997228	TGT	synonymous	NA	NA	NA	NA
M2_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	138	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999826	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	60	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9966365	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	95	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996827	CCT	synonymous	CTG	8	CTGCTGCT	NA
M2_p20	chr7	48168564	12A2p6	cell line	sgMsh2	48168564	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	255	0	0	NA	exonic	Mrgprb5	nonsynonymous SNV	Mrgprb5:NM_207538:exon1:c.C422T:p.T141I	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.974214028	1	0.9999999	TGT	nonsynonymous	ATGT	8	ATGTATGT	NA
M2_p20	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.3	107	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998589	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.3	107	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998589	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.272	32	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9781236	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	50062724	12A2p6	cell line	sgMsh2	50062724	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	140	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon3:c.G291A:p.P97P	7qB4	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999848	CGT	synonymous	NA	NA	NA	NA
M2_p20	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	130	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999702	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	88	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.999491	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	56729688	12A2p6	cell line	sgMsh2	56729688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	165	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon8:c.T965C:p.V322A	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	58786559	12A2p6	cell line	sgMsh2	58786559	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	46	0	0	NA	exonic	Atp10a	frameshift deletion	Atp10a:NM_009728:exon6:c.1096delT:p.F367Lfs*2	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	225	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	4.98E-08	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	59288409	12A2p6	cell line	sgMsh2	59288409	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	173	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon8:c.T2059A:p.F687I,Ube3a:NM_011668:exon10:c.T2122A:p.F708I"	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.428840625	2	0.5667641	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	124	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999552	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	64377170	12A2p6	cell line	sgMsh2	64377170	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	91	0	0	NA	exonic	Mphosph10	nonsynonymous SNV	Mphosph10:NM_026483:exon10:c.A1894C:p.K632Q	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995843	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	65326371	12A2p6	cell line	sgMsh2	65326371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	165	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon11:c.T1298C:p.V433A,Tjp1:NM_009386:exon11:c.T1298C:p.V433A"	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	399	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	70354853	12A2p6	cell line	sgMsh2	70354853	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	120	0	0	NA	exonic	Nr2f2	nonsynonymous SNV	"Nr2f2:NM_009697:exon3:c.G1049A:p.R350K,Nr2f2:NM_183261:exon3:c.G650A:p.R217K"	7qC	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999414	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	75610298	12A2p6	cell line	sgMsh2	75610298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	162	0	0	NA	exonic	Akap13	nonsynonymous SNV	Akap13:NM_029332:exon7:c.T2669C:p.V890A	7qD1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999966	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	75866202	12A2p6	cell line	sgMsh2	75866202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	96	0	0	NA	exonic	Klhl25	synonymous SNV	"Klhl25:NM_001122780:exon2:c.T855C:p.S285S,Klhl25:NM_029652:exon2:c.T855C:p.S285S,Klhl25:NM_182782:exon2:c.T855C:p.S285S"	7qD1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997034	GTC	synonymous	NA	NA	NA	NA
M2_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	190	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999995	CAG	synonymous	AGA	8	AGAAGAAG	NA
M2_p20	chr7	79297032	12A2p6	cell line	sgMsh2	79297032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	87	0	0	NA	exonic	Abhd2	nonsynonymous SNV	Abhd2:NM_018811:exon3:c.A19G:p.T7A	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9994555	GAC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr7	79737506	12A2p6	cell line	sgMsh2	79737506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	91	0	0	NA	exonic	Pex11a	synonymous SNV	Pex11a:NM_011068:exon3:c.T577C:p.L193L	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995843	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	122	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.964891406	1	0.9997748	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	48	0	0	NA	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9924671	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	80362923	12A2p6	cell line	sgMsh2	80362923	T	C	SNV	Mutect2;Strelka2	2	0.269	56	0	0	NA	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon13:c.A1841G:p.Y614C	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9955978	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	80384012	12A2p6	cell line	sgMsh2	80384012	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	76	0	0	NA	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon5:c.G490A:p.D164N	7qD2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.998856	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	104	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998272	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	55	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9952917	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	68	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9980378	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	44	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9901535	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	83670199	12A2p6	cell line	sgMsh2	83670199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	176	0	0	NA	exonic	Il16	synonymous SNV	"Il16:NM_001360087:exon9:c.T1389C:p.V463V,Il16:NM_010551:exon9:c.T1083C:p.V361V"	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.554696026	2	0.9999965	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr7	84282158	12A2p6	cell line	sgMsh2	84282158	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	99	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon11:c.A1103C:p.K368T	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997578	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	84856921	12A2p6	cell line	sgMsh2	84856921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	336	0	0	NA	exonic	Olfr291	nonsynonymous SNV	Olfr291:NM_146415:exon3:c.T557C:p.V186A	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.03E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	85233707	12A2p6	cell line	sgMsh2	85233707	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	426	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon3:c.A836G:p.H279R	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	85619322	12A2p6	cell line	sgMsh2	85619322	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	265	0	0	NA	exonic	Vmn2r71	synonymous SNV	Vmn2r71:NM_001384948:exon3:c.T720G:p.T240T	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	4.27E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	85619787	12A2p6	cell line	sgMsh2	85619787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	800	0	0	NA	exonic	Vmn2r71	synonymous SNV	Vmn2r71:NM_001384948:exon3:c.T1185C:p.A395A	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr7	85620609	12A2p6	cell line	sgMsh2	85620609	G	A	SNV	Mutect2;Vardict	2	0.067	127	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon4:c.G1315A:p.V439I	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.312307846	3	0.9997197	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	85623685	12A2p6	cell line	sgMsh2	85623685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	268	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon6:c.T1694G:p.L565R	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	3.67E-09	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	85738418	12A2p6	cell line	sgMsh2	85738418	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	320	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon6:c.C1922T:p.T641I	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.251710802	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	448	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M2_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	128	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999658	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86230507	12A2p6	cell line	sgMsh2	86230507	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	219	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C575A:p.A192D	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	363	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	86664660	12A2p6	cell line	sgMsh2	86664660	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	63	0	0	NA	exonic	Olfr293	stopgain	Olfr293:NM_001011752:exon1:c.G997T:p.E333X	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9972517	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86695071	12A2p6	cell line	sgMsh2	86695071	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	355	0	0	NA	exonic	Olfr292	nonsynonymous SNV	Olfr292:NM_146620:exon2:c.G614T:p.S205I	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.01E-09	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86695171	12A2p6	cell line	sgMsh2	86695171	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	311	0	0	NA	exonic	Olfr292	synonymous SNV	Olfr292:NM_146620:exon2:c.C714A:p.T238T	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.167807201	3	1	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	86773248	12A2p6	cell line	sgMsh2	86773248	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	184	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon2:c.G180A:p.K60K,Folh1:NM_016770:exon2:c.G180A:p.K60K"	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999992	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	383	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	86955001	12A2p6	cell line	sgMsh2	86955001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	379	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon6:c.A2386G:p.T796A	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	88430453	12A2p6	cell line	sgMsh2	88430453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	59	0	0	NA	exonic	Rab38	nonsynonymous SNV	Rab38:NM_028238:exon1:c.C52A:p.L18M	7qD3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9964023	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	90376095	12A2p6	cell line	sgMsh2	90376095	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	154	0	0	NA	exonic	Sytl2	synonymous SNV	"Sytl2:NM_001040085:exon7:c.A1290G:p.G430G,Sytl2:NM_001289583:exon7:c.A1290G:p.G430G,Sytl2:NM_001289584:exon7:c.A1209G:p.G403G,Sytl2:NM_001368878:exon7:c.A1290G:p.G430G,Sytl2:NM_031394:exon7:c.A1290G:p.G430G"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999941	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr7	91900872	12A2p6	cell line	sgMsh2	91900872	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	72	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon6:c.T572C:p.V191A	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.396211447	3	0.7149626	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	180	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.999999	TAA	synonymous	A	5	AAAAA	NA
M2_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	177	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999988	ATT	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr7	96852361	12A2p6	cell line	sgMsh2	96852361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	58	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon23:c.C3771A:p.N1257K,Tenm4:NM_011858:exon23:c.C3660A:p.N1220K,Tenm4:NM_001310762:exon24:c.C3768A:p.N1256K"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9961519	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	151	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999928	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	97513530	12A2p6	cell line	sgMsh2	97513530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	124	0	0	NA	exonic	Ints4	nonsynonymous SNV	"Ints4:NM_001358012:exon12:c.T1351A:p.S451T,Ints4:NM_027256:exon12:c.T1378A:p.S460T"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999552	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	76	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.998856	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	135	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999787	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	98098259	12A2p6	cell line	sgMsh2	98098259	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.233	153	0	0	NA	exonic	Myo7a	frameshift insertion	"Myo7a:NM_001256083:exon4:c.364dupC:p.H122Pfs*6,Myo7a:NM_001256081:exon5:c.397dupC:p.H133Pfs*6,Myo7a:NM_001256082:exon5:c.382dupC:p.H128Pfs*6,Myo7a:NM_008663:exon5:c.397dupC:p.H133Pfs*6"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	GTG	frameshift	G	5	GGGGG	1
M2_p20	chr7	98498946	12A2p6	cell line	sgMsh2	98498946	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	55	0	0	NA	exonic	Lrrc32	nonsynonymous SNV	Lrrc32:NM_001113379:exon3:c.G932A:p.S311N	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	2	1	1	0.9952917	AGC	nonsynonymous	CACC	9	CACCCACCC	NA
M2_p20	chr7	99118230	12A2p6	cell line	sgMsh2	99118230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	111	0	0	NA	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon2:c.T193C:p.Y65H	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998923	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	99347079	12A2p6	cell line	sgMsh2	99347079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	53	0	0	NA	exonic	Serpinh1	nonsynonymous SNV	"Serpinh1:NM_001111044:exon4:c.T797C:p.L266P,Serpinh1:NM_009825:exon4:c.T797C:p.L266P,Serpinh1:NM_001111043:exon5:c.T797C:p.L266P,Serpinh1:NM_001285776:exon5:c.T797C:p.L266P"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9946143	GAG	nonsynonymous	GAT	8	GATGATGA	NA
M2_p20	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	43	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9894727	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	72	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985017	CAG	synonymous	CAG	8	CAGCAGCA	NA
M2_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	47	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9919449	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102176314	12A2p6	cell line	sgMsh2	102176314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	164	0	0	NA	exonic	Nup98	synonymous SNV	"Nup98:NM_001287164:exon11:c.A1317G:p.T439T,Nup98:NM_001287165:exon11:c.A1266G:p.T422T,Nup98:NM_001287166:exon11:c.A1266G:p.T422T,Nup98:NM_001287167:exon11:c.A1317G:p.T439T,Nup98:NM_022979:exon11:c.A1317G:p.T439T"	7qE2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.452147181	2	0.9230462	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	99	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997578	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	154	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999941	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	114	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999121	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	150	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999923	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	158	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999955	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102900565	12A2p6	cell line	sgMsh2	102900565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	204	0	0	NA	exonic	Olfr570	nonsynonymous SNV	Olfr570:NM_147110:exon1:c.T197C:p.M66T	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.815729449	1	0.918625	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	200	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	103098528	12A2p6	cell line	sgMsh2	103098528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	543	0	0	NA	exonic	Olfr585	synonymous SNV	Olfr585:NM_147087:exon1:c.T786C:p.P262P	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr7	103212255	12A2p6	cell line	sgMsh2	103212255	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	358	0	0	NA	exonic	Olfr593	nonsynonymous SNV	Olfr593:NM_146380:exon1:c.G394T:p.A132S	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.01E-09	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	103220442	12A2p6	cell line	sgMsh2	103220442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	339	0	0	NA	exonic	Olfr594	synonymous SNV	Olfr594:NM_207143:exon1:c.T723C:p.T241T	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.02E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr7	103418430	12A2p6	cell line	sgMsh2	103418430	T	C	SNV	Mutect2;Vardict	2	0.027	634	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.T931C:p.Y311H	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.125855401	3	1	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	165	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr7	103470424	12A2p6	cell line	sgMsh2	103470424	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	249	0	0	NA	exonic	Olfr608	synonymous SNV	Olfr608:NM_146756:exon1:c.C384T:p.C128C	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	1.06E-08	GCA	synonymous	NA	NA	NA	NA
M2_p20	chr7	103612233	12A2p6	cell line	sgMsh2	103612233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	202	0	0	NA	exonic	Olfr620	nonsynonymous SNV	Olfr620:NM_146812:exon1:c.T119C:p.V40A	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.885649116	1	0.9993236	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	104159902	12A2p6	cell line	sgMsh2	104159902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	97	0	0	NA	exonic	Olfm5	nonsynonymous SNV	Olfm5:NM_172905:exon5:c.G700A:p.G234S	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	0.997520584	1	0.9996988	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	104179892	12A2p6	cell line	sgMsh2	104179892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	233	0	0	NA	exonic	Olfr648	nonsynonymous SNV	Olfr648:NM_146751:exon1:c.G515A:p.R172K	7qE3	chr7-26198811-104249879	3	2	1	0.9	4.195180026	NA	1	1	1	2.94E-08	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.329	284	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	220	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	327	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.05E-09	TCC	synonymous	NA	NA	NA	NA
M2_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	487	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9992867	GAT	synonymous	NA	NA	NA	NA
M2_p20	chr7	105408054	12A2p6	cell line	sgMsh2	105408054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	91	0	0	NA	exonic	Cnga4	nonsynonymous SNV	Cnga4:NM_001033317:exon6:c.A1672G:p.T558A	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9995843	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	90	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2_p20	chr7	106602754	12A2p6	cell line	sgMsh2	106602754	G	A	SNV	Mutect2;MuSe;Vardict	3	0.065	192	0	0	NA	exonic	Gm1966	synonymous SNV	"Gm1966:NM_001277179:exon3:c.C1282T:p.L428L,Gm1966:NM_001277180:exon3:c.C1282T:p.L428L,Gm1966:NM_001277181:exon4:c.C1282T:p.L428L,Gm1966:NM_001277182:exon4:c.C1282T:p.L428L,Gm1966:NM_001277183:exon6:c.C1282T:p.L428L"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.302985224	3	0.9999989	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	226	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	4.66E-08	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	209	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	107128656	12A2p6	cell line	sgMsh2	107128656	T	C	SNV	Mutect2;Vardict	2	0.033	272	0	0	NA	exonic	Olfr715	nonsynonymous SNV	Olfr715:NM_146780:exon1:c.A736G:p.M246V	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.153823268	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	107128759	12A2p6	cell line	sgMsh2	107128759	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	281	0	0	NA	exonic	Olfr715	synonymous SNV	Olfr715:NM_146780:exon1:c.C633T:p.V211V	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	2.11E-09	AGA	synonymous	NA	NA	NA	NA
M2_p20	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	251	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.24704949	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	107697678	12A2p6	cell line	sgMsh2	107697678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	117	0	0	NA	exonic	Ppfibp2	stopgain	"Ppfibp2:NM_001357438:exon3:c.G148T:p.E50X,Ppfibp2:NM_001357436:exon4:c.G367T:p.E123X,Ppfibp2:NM_001357437:exon4:c.G367T:p.E123X,Ppfibp2:NM_001163557:exon6:c.G598T:p.E200X,Ppfibp2:NM_008905:exon6:c.G598T:p.E200X"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999282	AGA	nonsynonymous	AAG	8	AAGAAGAA	NA
M2_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	551	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M2_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	ATG	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	135	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999787	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	263	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	4.75E-09	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	108255891	12A2p6	cell line	sgMsh2	108255891	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	364	0	0	NA	exonic	Olfr488	frameshift deletion	Olfr488:NM_146732:exon1:c.246delC:p.S83Vfs*70	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M2_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	534	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	108367789	12A2p6	cell line	sgMsh2	108367789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	453	0	0	NA	exonic	Olfr494	nonsynonymous SNV	Olfr494:NM_146737:exon1:c.T298C:p.C100R	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	108465736	12A2p6	cell line	sgMsh2	108465736	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.395	194	0	0	NA	exonic	Olfr498	frameshift deletion	Olfr498:NM_146307:exon1:c.411delA:p.M139Cfs*10	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr7	108545012	12A2p6	cell line	sgMsh2	108545012	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	389	0	0	NA	exonic	Olfr503	synonymous SNV	Olfr503:NM_001011527:exon1:c.A486T:p.P162P	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.00E-09	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.254	341	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.02E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	109340453	12A2p6	cell line	sgMsh2	109340453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	249	0	0	NA	exonic	Stk33	synonymous SNV	Stk33:NM_054103:exon4:c.A240G:p.R80R	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.06E-08	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr7	110093180	12A2p6	cell line	sgMsh2	110093180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	314	0	0	NA	exonic	Zfp143	synonymous SNV	"Zfp143:NM_001374618:exon15:c.A1797G:p.L599L,Zfp143:NM_009281:exon15:c.A1794G:p.L598L"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.12E-09	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	110442353	12A2p6	cell line	sgMsh2	110442353	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	114	0	0	NA	exonic	Sbf2	nonsynonymous SNV	Sbf2:NM_177324:exon10:c.T990G:p.D330E	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.307646535	3	0.9994956	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	110887999	12A2p6	cell line	sgMsh2	110887999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon16:c.C2141T:p.A714V,Mrvi1:NM_194464:exon17:c.C1946T:p.A649V"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9985017	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	111075668	12A2p6	cell line	sgMsh2	111075668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	88	0	0	NA	exonic	Eif4g2	nonsynonymous SNV	"Eif4g2:NM_001040131:exon14:c.G1341T:p.Q447H,Eif4g2:NM_013507:exon15:c.G1455T:p.Q485H"	7qE3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	2	1	1	0.999491	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	86	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9994174	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	112346842	12A2p6	cell line	sgMsh2	112346842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	43	0	0	NA	exonic	Mical2	nonsynonymous SNV	"Mical2:NM_177282:exon18:c.T2329C:p.C777R,Mical2:NM_001193305:exon23:c.T3010C:p.C1004R"	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.997520584	1	0.9890818	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	112351369	12A2p6	cell line	sgMsh2	112351369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	86	0	0	NA	exonic	Mical2	synonymous SNV	"Mical2:NM_177282:exon20:c.A2529G:p.V843V,Mical2:NM_001193305:exon25:c.A3210G:p.V1070V"	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9994174	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	360	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	114036656	12A2p6	cell line	sgMsh2	114036656	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	95	0	0	NA	exonic	Spon1	frameshift deletion	Spon1:NM_145584:exon15:c.2104delG:p.G703Vfs*40	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	146	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999899	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	114791266	12A2p6	cell line	sgMsh2	114791266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	19	0	0	NA	exonic	Insc	nonsynonymous SNV	Insc:NM_173767:exon3:c.T371C:p.I124T	7qF1	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9488776	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	119694675	12A2p6	cell line	sgMsh2	119694675	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	63	0	0	NA	exonic	Acsm4	nonsynonymous SNV	Acsm4:NM_178414:exon3:c.A268G:p.S90G	7qF2	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.536050781	2	0.9728275	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	218	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M2_p20	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	14	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	2	1	1	0.9294724	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	123421601	12A2p6	cell line	sgMsh2	123421601	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	94	0	0	NA	exonic	Lcmt1	synonymous SNV	"Lcmt1:NM_001355050:exon4:c.C280T:p.L94L,Lcmt1:NM_025304:exon8:c.C748T:p.L250L"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9996605	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr7	123490214	12A2p6	cell line	sgMsh2	123490214	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.355	156	0	0	NA	exonic	Zkscan2	frameshift deletion	Zkscan2:NM_001081329:exon5:c.833delA:p.K278Rfs*5	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M2_p20	chr7	126115914	12A2p6	cell line	sgMsh2	126115914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	115	0	0	NA	exonic	Xpo6	nonsynonymous SNV	"Xpo6:NM_001311143:exon15:c.A1898G:p.H633R,Xpo6:NM_028816:exon15:c.A1895G:p.H632R"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999178	GTG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M2_p20	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	99	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9997578	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	126488862	12A2p6	cell line	sgMsh2	126488862	A	G	SNV	Mutect2;Vardict	2	0.043	255	0	0	NA	exonic	Tufm	nonsynonymous SNV	"Tufm:NM_001163713:exon5:c.A536G:p.Y179C,Tufm:NM_172745:exon5:c.A536G:p.Y179C"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.200436379	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	126564507	12A2p6	cell line	sgMsh2	126564507	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	146	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon4:c.C266T:p.A89V	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.237726868	3	0.9999999	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.565	29	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	2	1	1	0.9733402	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	70	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9982853	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	18	0	0	NA	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9454772	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	49	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9929556	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	182	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999991	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	127925144	12A2p6	cell line	sgMsh2	127925144	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	320	0	0	NA	exonic	Kat8	nonsynonymous SNV	"Kat8:NM_001360699:exon10:c.G719A:p.S240N,Kat8:NM_026370:exon10:c.G1193A:p.S398N"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	1.08E-09	AGC	nonsynonymous	CAT	8	CATCATCA	NA
M2_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.218	49	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9929556	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	125	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.685212737	2	0.9712336	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	53	0	0	NA	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9946143	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	118	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999329	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	172	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999983	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	78	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.000999602	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M2_p20	chr7	135700725	12A2p6	cell line	sgMsh2	135700725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	206	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A2579G:p.D860G	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	135701957	12A2p6	cell line	sgMsh2	135701957	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	128	0	0	NA	exonic	Mki67	synonymous SNV	Mki67:NM_001081117:exon11:c.A2181G:p.Q727Q	7qF3	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.335614402	3	0.9985431	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	56	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.904294361	1	0.9725805	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2976	84	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M2_p20	chr7	140865153	12A2p6	cell line	sgMsh2	140865153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	0	0	NA	exonic	Sirt3	nonsynonymous SNV	"Sirt3:NM_001127351:exon6:c.T575C:p.V192A,Sirt3:NM_001177804:exon6:c.T806C:p.V269A,Sirt3:NM_022433:exon6:c.T575C:p.V192A"	7qF4	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9942402	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	141637544	12A2p6	cell line	sgMsh2	141637544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	165	0	0	NA	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.T6900C:p.T2300T	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999972	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	141638109	12A2p6	cell line	sgMsh2	141638109	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	192	0	0	NA	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.C6335A:p.P2112H	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	110	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9998848	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	119	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999373	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr7	141809820	12A2p6	cell line	sgMsh2	141809820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	103	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon31:c.A6864G:p.S2288S	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.918278294	1	0.996619	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr7	142002489	12A2p6	cell line	sgMsh2	142002489	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	209	0	0	NA	exonic	Brsk2	nonsynonymous SNV	"Brsk2:NM_029426:exon19:c.A1957T:p.S653C,Brsk2:NM_001276763:exon20:c.A2023T:p.S675C"	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.661906182	2	0.9998283	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	143611739	12A2p6	cell line	sgMsh2	143611739	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	131	0	0	NA	exonic	Tnfrsf26	nonsynonymous SNV	Tnfrsf26:NM_175649:exon6:c.G572A:p.C191Y	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999721	ACA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	144603591	12A2p6	cell line	sgMsh2	144603591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	122	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon21:c.A2110G:p.I704V,Ano1:NM_178642:exon22:c.A2122G:p.I708V"	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	0.955568784	1	0.9996664	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	181	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.999999	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	166	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-104329818-145323643	3	2	1	0.9	4.195180026	NA	1	1	1	0.9999974	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr8	3441230	12A2p6	cell line	sgMsh2	3441230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	386	0	0	NA	exonic	Arhgef18	synonymous SNV	"Arhgef18:NM_133962:exon9:c.T1080C:p.A360A,Arhgef18:NM_001370668:exon18:c.T2232C:p.A744A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	515	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9999987	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	208	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.890310428	1	0.999591	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr8	4214160	12A2p6	cell line	sgMsh2	4214160	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	142	0	0	NA	exonic	Prr36	nonsynonymous SNV	Prr36:NM_207203:exon6:c.C1505T:p.T502M	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.848358627	1	0.9778345	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	4736366	12A2p6	cell line	sgMsh2	4736366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	142	0	0	NA	exonic	Shcbp1	nonsynonymous SNV	Shcbp1:NM_011369:exon13:c.G1735A:p.G579R	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999867	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	639	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M2_p20	chr8	10007116	12A2p6	cell line	sgMsh2	10007116	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.128	41	0	0	NA	exonic	Tnfsf13b	nonsynonymous SNV	"Tnfsf13b:NM_001347309:exon1:c.A274G:p.T92A,Tnfsf13b:NM_033622:exon1:c.A274G:p.T92A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.009148856	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	11561704	12A2p6	cell line	sgMsh2	11561704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	198	0	0	NA	exonic	Ing1	nonsynonymous SNV	"Ing1:NM_001302457:exon2:c.G141T:p.Q47H,Ing1:NM_001302458:exon2:c.G141T:p.Q47H,Ing1:NM_001302459:exon2:c.G141T:p.Q47H,Ing1:NM_001302460:exon2:c.G141T:p.Q47H,Ing1:NM_011919:exon2:c.G423T:p.Q141H,Ing1:NM_001302451:exon3:c.G315T:p.Q105H"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999913	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	254	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.89963305	1	0.9999538	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	115	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.475453736	2	0.9692236	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	261	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	5.29E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	13562199	12A2p6	cell line	sgMsh2	13562199	-	AT	Insertion	Mutect2;Vardict	2	0.07	57	0	0	NA	exonic	1700029H14Rik	frameshift insertion	"1700029H14Rik:NM_001080781:exon1:c.149_150insAT:p.D50Efs*14,1700029H14Rik:NM_025601:exon1:c.149_150insAT:p.D50Efs*14"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.32629178	NA	NA	GAT	frameshift	C	5	CCCCC	2
M2_p20	chr8	13562204	12A2p6	cell line	sgMsh2	13562205	CC	AT	DBS	Mutect2;Vardict	2	0.071	57	0	0	NA	exonic	1700029H14Rik	nonframeshift substitution	"1700029H14Rik:NM_001080781:exon1:c.144_145AT:p.G49W,1700029H14Rik:NM_025601:exon1:c.144_145AT:p.G49W"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.330953091	NA	NA	CCC	nonsynonymous	C	5	CCCCC	NA
M2_p20	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	200	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.773777649	2	0.620518	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	13577493	12A2p6	cell line	sgMsh2	13577493	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	90	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon21:c.G2008A:p.D670N	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.918278294	1	0.9943777	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	13577878	12A2p6	cell line	sgMsh2	13577878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	122	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon20:c.C1861A:p.L621I	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.820390761	1	0.9092804	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	15910470	12A2p6	cell line	sgMsh2	15910470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	110	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon64:c.G9944T:p.R3315M	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9998848	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	180	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.913616983	1	0.99978	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	15931049	12A2p6	cell line	sgMsh2	15931049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	144	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon54:c.A8368G:p.I2790V	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999884	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	16157071	12A2p6	cell line	sgMsh2	16157071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	246	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon25:c.A3943G:p.T1315A	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	1.28E-08	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	16200050	12A2p6	cell line	sgMsh2	16200050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	140	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon20:c.T2913C:p.N971N	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.666567493	2	0.9935719	AAT	synonymous	NA	NA	NA	NA
M2_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	238	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	2.13E-08	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	60	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9966365	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	21084450	12A2p6	cell line	sgMsh2	21084450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	155	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.A9G:p.T3T	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999945	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr8	21084576	12A2p6	cell line	sgMsh2	21084576	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	133	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.C135A:p.S45S	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999756	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr8	21794432	12A2p6	cell line	sgMsh2	21794432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	184	0	0	NA	exonic	Defb1	synonymous SNV	Defb1:NM_007843:exon2:c.T66C:p.V22V	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999992	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	22217138	12A2p6	cell line	sgMsh2	22217138	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	exonic	Vps36	nonsynonymous SNV	"Vps36:NM_001368379:exon11:c.G886T:p.D296Y,Vps36:NM_027338:exon12:c.G919T:p.D307Y"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9781082	TGA	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	106	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.890310428	1	0.9916686	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	22675022	12A2p6	cell line	sgMsh2	22675022	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	435	0	0	NA	exonic	Ikbkb	synonymous SNV	"Ikbkb:NM_001159774:exon9:c.A741G:p.E247E,Ikbkb:NM_010546:exon9:c.A741G:p.E247E"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.125855401	3	1	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	340	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.811068138	1	0.9167711	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Vardict	2	0.059	275	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.275017357	NA	NA	GAG	frameshift	NA	NA	NA	-1
M2_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	118	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.508082914	2	0.9967765	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	178	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.978875339	1	0.9999957	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	88	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.999491	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	109	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9998767	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	33294983	12A2p6	cell line	sgMsh2	33294983	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	143	0	0	NA	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon18:c.C2089G:p.P697A,Wrn:NM_011721:exon18:c.C2089G:p.P697A"	8qA3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.372904891	3	0.9864647	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	34093653	12A2p6	cell line	sgMsh2	34093653	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	263	0	0	NA	exonic	Dctn6	nonsynonymous SNV	"Dctn6:NM_001293758:exon5:c.G292A:p.D98N,Dctn6:NM_011722:exon5:c.G307A:p.D103N,Dctn6:NM_001293757:exon6:c.G322A:p.D108N,Dctn6:NM_001293759:exon6:c.G64A:p.D22N"	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999787	GGG	synonymous	NA	NA	NA	NA
M2_p20	chr8	35588445	12A2p6	cell line	sgMsh2	35588445	C	A	SNV	Mutect2;MuSe;Vardict	3	0.4	11	0	0	NA	exonic	Mfhas1	nonsynonymous SNV	"Mfhas1:NM_001081279:exon1:c.C73A:p.L25M,Mfhas1:NM_001364259:exon1:c.C73A:p.L25M"	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9142164	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	40335865	12A2p6	cell line	sgMsh2	40335865	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	380	0	0	NA	exonic	Micu3	nonsynonymous SNV	Micu3:NM_030110:exon2:c.A416G:p.E139G	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.12119409	3	1	GAG	nonsynonymous	GA	8	GAGAGAGA	NA
M2_p20	chr8	40795968	12A2p6	cell line	sgMsh2	40795968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	781	0	0	NA	exonic	Adam20	nonsynonymous SNV	Adam20:NM_001009548:exon2:c.T1114C:p.C372R	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.279678668	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	40797049	12A2p6	cell line	sgMsh2	40797049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	311	0	0	NA	exonic	Adam20	nonsynonymous SNV	Adam20:NM_001009548:exon2:c.T2195C:p.F732S	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.568679959	2	1.05E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	324	0	0	NA	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.508082914	2	0.9999996	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	906	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.997520584	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	43521315	12A2p6	cell line	sgMsh2	43521315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	456	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.A649G:p.T217A	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	43652529	12A2p6	cell line	sgMsh2	43652529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	920	0	0	NA	exonic	Adam34	synonymous SNV	Adam34:NM_145745:exon2:c.T78C:p.S26S	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.251710802	3	1	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.57	766	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	44952522	12A2p6	cell line	sgMsh2	44952522	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.551	316	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon1:c.T2309A:p.M770K	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.10E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	190	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	45276056	12A2p6	cell line	sgMsh2	45276056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	197	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon10:c.T1130G:p.L377R	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.61529307	2	0.999987	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	45943514	12A2p6	cell line	sgMsh2	45943514	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	256	0	0	NA	exonic	Ccdc110	nonsynonymous SNV	Ccdc110:NM_001033246:exon6:c.A2441C:p.D814A	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.605970448	2	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	220	0	0	NA	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.20509769	3	1.00E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	174	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999985	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	48112026	12A2p6	cell line	sgMsh2	48112026	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	219	0	0	NA	exonic	Dctd	nonsynonymous SNV	"Dctd:NM_001161515:exon3:c.T185C:p.M62T,Dctd:NM_001161516:exon3:c.T185C:p.M62T,Dctd:NM_178788:exon3:c.T185C:p.M62T"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.209759001	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	162	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999966	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	321	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.73648716	2	0.9973176	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	227	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	4.36E-08	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	56547410	12A2p6	cell line	sgMsh2	56547410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	257	0	0	NA	exonic	Cep44	nonsynonymous SNV	Cep44:NM_001009951:exon2:c.C67T:p.P23S	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9999977	GGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	203	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999998	ACG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	214	0	0	NA	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr8	66681233	12A2p6	cell line	sgMsh2	66681233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	151	0	0	NA	exonic	Npy5r	nonsynonymous SNV	"Npy5r:NM_001358957:exon2:c.A907G:p.I303V,Npy5r:NM_001358958:exon2:c.A907G:p.I303V,Npy5r:NM_016708:exon2:c.A907G:p.I303V"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999928	ATG	nonsynonymous	ATGA	8	ATGAATGA	NA
M2_p20	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	228	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.293662602	3	2.44E-08	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.497	299	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.33E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	69894228	12A2p6	cell line	sgMsh2	69894228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	186	0	0	NA	exonic	Ndufa13	nonsynonymous SNV	"Ndufa13:NM_001382215:exon5:c.A428G:p.Y143C,Ndufa13:NM_023312:exon5:c.A428G:p.Y143C"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999993	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	208	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.853019939	1	0.9940609	CGA	synonymous	NA	NA	NA	NA
M2_p20	chr8	69916441	12A2p6	cell line	sgMsh2	69916441	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	150	0	0	NA	exonic	Gatad2a	nonsynonymous SNV	"Gatad2a:NM_001113346:exon8:c.A752G:p.N251S,Gatad2a:NM_001286450:exon8:c.A761G:p.N254S,Gatad2a:NM_145596:exon8:c.A755G:p.N252S"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.251710802	3	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.532	126	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999609	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	87	0	0	NA	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.321630469	3	0.9930545	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	270	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.908955672	1	0.9999886	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	71579598	12A2p6	cell line	sgMsh2	71579598	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	120	0	0	NA	exonic	Slc27a1	nonsynonymous SNV	"Slc27a1:NM_001357182:exon2:c.G362A:p.R121H,Slc27a1:NM_001357180:exon3:c.G362A:p.R121H,Slc27a1:NM_001357181:exon3:c.G362A:p.R121H,Slc27a1:NM_011977:exon4:c.G362A:p.R121H"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999414	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	128	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.792422894	1	0.7503028	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	75054660	12A2p6	cell line	sgMsh2	75054660	C	T	SNV	Mutect2;Vardict	2	0.079	130	0	0	NA	exonic	Tom1	synonymous SNV	"Tom1:NM_001136259:exon7:c.C732T:p.T244T,Tom1:NM_011622:exon7:c.C732T:p.T244T"	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.36824358	3	0.9851949	CCC	synonymous	CCCA	8	CCCACCCA	NA
M2_p20	chr8	76909079	12A2p6	cell line	sgMsh2	76909079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	218	0	0	NA	exonic	Nr3c2	nonsynonymous SNV	Nr3c2:NM_001083906:exon2:c.T808C:p.S270P	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.438163247	2	0.7966957	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	79693470	12A2p6	cell line	sgMsh2	79693470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	329	0	0	NA	exonic	Abce1	synonymous SNV	Abce1:NM_015751:exon10:c.A876G:p.V292V	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	1.04E-09	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr8	80614641	12A2p6	cell line	sgMsh2	80614641	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	190	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.A3562C:p.T1188P	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.999994	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	82864094	12A2p6	cell line	sgMsh2	82864094	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	33	0	0	NA	exonic	Rnf150	nonsynonymous SNV	Rnf150:NM_177378:exon1:c.C85A:p.L29M	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.932262228	1	0.9566896	CCT	nonsynonymous	TCTGC	10	TCTGCTCTGC	NA
M2_p20	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	180	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.999999	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	83271018	12A2p6	cell line	sgMsh2	83271018	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	126	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon18:c.A2504C:p.K835T,Tbc1d9:NM_001111304:exon21:c.A3203C:p.K1068T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.391550136	3	0.9137759	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	145	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999892	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M2_p20	chr8	83671771	12A2p6	cell line	sgMsh2	83671771	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	147	0	0	NA	exonic	Pkn1	nonsynonymous SNV	"Pkn1:NM_001199593:exon18:c.C2266T:p.L756F,Pkn1:NM_177262:exon18:c.C2251T:p.L751F"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.587325204	2	0.9999163	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	247	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.20E-08	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	84868907	12A2p6	cell line	sgMsh2	84868907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Farsa	nonsynonymous SNV	Farsa:NM_025648:exon13:c.T1430G:p.L477R	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9985994	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	62	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9970603	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	85355192	12A2p6	cell line	sgMsh2	85355192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	150	0	0	NA	exonic	Mylk3	synonymous SNV	"Mylk3:NM_001297612:exon4:c.T966A:p.A322A,Mylk3:NM_175441:exon4:c.T1365A:p.A455A"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999923	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr8	85553951	12A2p6	cell line	sgMsh2	85553951	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	303	0	0	NA	exonic	Dnaja2	nonsynonymous SNV	Dnaja2:NM_019794:exon2:c.A104G:p.Y35C	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.251710802	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	85810588	12A2p6	cell line	sgMsh2	85810588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	221	0	0	NA	exonic	Itfg1	synonymous SNV	Itfg1:NM_028007:exon6:c.A609G:p.P203P	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.619954382	2	0.9999961	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	241	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.750471093	2	0.9463451	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	88306635	12A2p6	cell line	sgMsh2	88306635	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	48	0	0	NA	exonic	Adcy7	synonymous SNV	"Adcy7:NM_001037723:exon4:c.T36G:p.G12G,Adcy7:NM_001037724:exon4:c.T36G:p.G12G,Adcy7:NM_001109756:exon4:c.T36G:p.G12G,Adcy7:NM_007406:exon4:c.T36G:p.G12G"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.797084205	1	0.8196861	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	90932823	12A2p6	cell line	sgMsh2	90932823	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	247	0	0	NA	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon1:c.A410C:p.N137T,Chd9:NM_177224:exon3:c.A410C:p.N137T"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	1.20E-08	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	92886646	12A2p6	cell line	sgMsh2	92886646	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	270	0	0	NA	exonic	Lpcat2	synonymous SNV	"Lpcat2:NM_001357374:exon7:c.T813C:p.A271A,Lpcat2:NM_001357375:exon8:c.T240C:p.A80A,Lpcat2:NM_173014:exon9:c.T933C:p.A311A"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.186452446	3	1	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	92972891	12A2p6	cell line	sgMsh2	92972891	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.535	222	0	0	NA	exonic	Slc6a2	frameshift deletion	Slc6a2:NM_009209:exon3:c.546delC:p.N184Tfs*57	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M2_p20	chr8	93036005	12A2p6	cell line	sgMsh2	93036005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	261	0	0	NA	exonic	Ces1a	nonsynonymous SNV	Ces1a:NM_001013764:exon5:c.A637G:p.S213G	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.783100271	2	0.5745773	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	201	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999998	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr8	94087388	12A2p6	cell line	sgMsh2	94087388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	185	0	0	NA	exonic	Bbs2	nonsynonymous SNV	Bbs2:NM_026116:exon5:c.A601G:p.T201A	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999993	GTC	nonsynonymous	CTCTGT	13	CTCTGTCTCTGTC	NA
M2_p20	chr8	94475964	12A2p6	cell line	sgMsh2	94475964	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.551	113	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon4:c.G691A:p.A231T	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999059	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	76	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.834374694	1	0.9184247	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	143	0	0	NA	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.801745516	1	0.8172618	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	94749812	12A2p6	cell line	sgMsh2	94749812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	400	0	0	NA	exonic	Ccl22	nonsynonymous SNV	Ccl22:NM_009137:exon3:c.A205G:p.T69A	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	94778057	12A2p6	cell line	sgMsh2	94778057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	182	0	0	NA	exonic	Cx3cl1	nonsynonymous SNV	Cx3cl1:NM_009142:exon2:c.A100G:p.I34V	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.596647826	2	0.9999893	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	117	0	0	NA	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999282	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	95720702	12A2p6	cell line	sgMsh2	95720702	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.212	105	0	0	NA	exonic	Cnot1	nonsynonymous SNV	"Cnot1:NM_001205226:exon48:c.A6972C:p.K2324N,Cnot1:NM_001372351:exon48:c.A6996C:p.K2332N,Cnot1:NM_001372353:exon48:c.A6993C:p.K2331N,Cnot1:NM_178078:exon48:c.A6978C:p.K2326N"	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.988197962	1	0.9997521	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	451	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.237726868	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	102634635	12A2p6	cell line	sgMsh2	102634635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	188	0	0	NA	exonic	Cdh11	synonymous SNV	Cdh11:NM_009866:exon13:c.T2070C:p.F690F	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999994	TAA	synonymous	NA	NA	NA	NA
M2_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	211	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999999	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	65	0	0	NA	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9975982	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	182	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999991	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	681	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	1	GAC	synonymous	NA	NA	NA	NA
M2_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	188	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	114	0	0	NA	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.806406827	1	0.8468595	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	185	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.801745516	NA	NA	CTT	frameshift	NA	NA	NA	-1
M2_p20	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	244	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.633938315	2	0.9999971	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	105937264	12A2p6	cell line	sgMsh2	105937264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	76	0	0	NA	exonic	Psmb10	synonymous SNV	Psmb10:NM_013640:exon4:c.T360C:p.R120R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.759793716	1	0.613467	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	143	0	0	NA	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999876	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	35	0	0	NA	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9820643	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	108	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.880987805	1	0.9889103	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	107392767	12A2p6	cell line	sgMsh2	107392767	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	228	0	0	NA	exonic	Nqo1	synonymous SNV	Nqo1:NM_008706:exon3:c.G177A:p.E59E	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.918278294	1	0.999975	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr8	108948006	12A2p6	cell line	sgMsh2	108948007	AG	-	Deletion	Strelka2;Vardict	2	0.1389	36	0	0	NA	exonic	Zfhx3	frameshift deletion	Zfhx3:NM_007496:exon9:c.5687_5688del:p.R1899Gfs*8	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.647456117	NA	NA	CAG	frameshift	AG	10	AGAGAGAGAG	-2
M2_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	144	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9999884	GAG	synonymous	NA	NA	NA	NA
M2_p20	chr8	109541735	12A2p6	cell line	sgMsh2	109541735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	101	0	0	NA	exonic	Pmfbp1	synonymous SNV	Pmfbp1:NM_019938:exon20:c.C2913T:p.I971I	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.69453536	2	0.09943602	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	197	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.731825849	2	0.9649889	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M2_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;MuSe;Vardict	3	0.075	517	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.349598335	3	1.04E-09	ACA	synonymous	NA	NA	NA	NA
M2_p20	chr8	109909142	12A2p6	cell line	sgMsh2	109909142	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	137	0	0	NA	exonic	Phlpp2	nonsynonymous SNV	Phlpp2:NM_001122594:exon6:c.A941G:p.N314S	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.452147181	2	0.8971586	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	109948304	12A2p6	cell line	sgMsh2	109948304	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	71	0	0	NA	exonic	Marveld3	synonymous SNV	Marveld3:NM_212447:exon3:c.T879A:p.I293I	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.582663892	2	0.977134	CAA	synonymous	NA	NA	NA	NA
M2_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	265	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.727164538	2	0.9957387	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Vardict	2	0.064	97	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.298323913	3	0.9989915	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr8	110748371	12A2p6	cell line	sgMsh2	110748371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	176	0	0	NA	exonic	Il34	nonsynonymous SNV	"Il34:NM_001135100:exon5:c.T274C:p.Y92H,Il34:NM_029646:exon5:c.T274C:p.Y92H"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.745809782	2	0.8740772	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	110823496	12A2p6	cell line	sgMsh2	110823496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	102	0	0	NA	exonic	Sf3b3	nonsynonymous SNV	Sf3b3:NM_133953:exon15:c.T1889C:p.M630T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.820390761	1	0.8998633	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	110978494	12A2p6	cell line	sgMsh2	110978494	T	C	SNV	Mutect2;MuSe;Vardict	3	0.094	403	0	0	NA	exonic	Ddx19a	nonsynonymous SNV	Ddx19a:NM_007916:exon9:c.A994G:p.I332V	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.438163247	2	0.8867308	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	185	0	0	NA	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999993	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	111070742	12A2p6	cell line	sgMsh2	111070742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	199	0	0	NA	exonic	Clec18a	nonsynonymous SNV	Clec18a:NM_181549:exon11:c.G1264A:p.A422T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.997520584	1	0.9999997	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	228	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	4.08E-08	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	111609317	12A2p6	cell line	sgMsh2	111609317	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	456	0	0	NA	exonic	Znrf1	nonsynonymous SNV	"Znrf1:NM_001168621:exon2:c.A449C:p.K150T,Znrf1:NM_001168623:exon2:c.A149C:p.K50T,Znrf1:NM_001363488:exon2:c.A449C:p.K150T,Znrf1:NM_001363489:exon2:c.A149C:p.K50T,Znrf1:NM_133206:exon2:c.A449C:p.K150T"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.591986515	2	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.56	67	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.997901	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	113638764	12A2p6	cell line	sgMsh2	113638764	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	121	0	0	NA	exonic	Mon1b	synonymous SNV	"Mon1b:NM_173015:exon3:c.T723C:p.S241S,Mon1b:NM_001048143:exon4:c.T723C:p.S241S"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.578002581	2	0.9995843	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	119236859	12A2p6	cell line	sgMsh2	119236859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.606	107	0	0	NA	exonic	Cdh13	nonsynonymous SNV	Cdh13:NM_019707:exon9:c.A1177G:p.T393A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9998589	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	119870316	12A2p6	cell line	sgMsh2	119870316	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	87	0	0	NA	exonic	Klhl36	nonsynonymous SNV	Klhl36:NM_146219:exon3:c.T755C:p.M252T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.424179314	2	0.5436572	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	143	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.969552717	1	0.9999441	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	128	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.713180604	2	0.9172649	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M2_p20	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	67	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.871665183	1	0.9605362	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	43	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.960230095	1	0.9811478	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	97	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.848358627	1	0.957145	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	122893669	12A2p6	cell line	sgMsh2	122893669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	98	0	0	NA	exonic	Ankrd11	nonsynonymous SNV	Ankrd11:NM_001081379:exon9:c.A3380G:p.K1127R	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.713180604	2	0.8111933	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	123313047	12A2p6	cell line	sgMsh2	123313047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	156	0	0	NA	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon5:c.T487C:p.F163L	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.969552717	1	0.9999734	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	24	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	2	1	1	0.9630197	TTG	synonymous	NA	NA	NA	NA
M2_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	185	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999993	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M2_p20	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	134	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9999772	CCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	123962010	12A2p6	cell line	sgMsh2	123962010	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	181	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon8:c.A1526G:p.Y509C	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.999999	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	168	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.950907472	1	0.9999603	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	219	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.783100271	1	0.5028867	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	124576246	12A2p6	cell line	sgMsh2	124576246	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	82	0	0	NA	exonic	Capn9	nonsynonymous SNV	Capn9:NM_023709:exon1:c.G102T:p.Q34H	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.997520584	1	0.9991814	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	124614557	12A2p6	cell line	sgMsh2	124614557	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	156	0	0	NA	exonic	Capn9	nonsynonymous SNV	Capn9:NM_023709:exon17:c.C1801T:p.L601F	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	3	1	1	0.9999948	TCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	154	0	0	NA	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	0.24704949	3	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	43	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.195180026	NA	1	1	1	0.9894727	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	131	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999721	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	303	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.25E-09	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	4296817	12A2p6	cell line	sgMsh2	4296817	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	70	0	0	NA	exonic	Aasdhppt	nonsynonymous SNV	"Aasdhppt:NM_001326359:exon5:c.A626C:p.K209T,Aasdhppt:NM_026276:exon6:c.A788C:p.K263T"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.666567493	2	0.8456145	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	4424385	12A2p6	cell line	sgMsh2	4424385	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	152	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon16:c.T2479A:p.L827M,Gria4:NM_019691:exon16:c.T2479A:p.L827M"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999932	AAG	nonsynonymous	CCAAGC	13	CCAAGCCCAAGCC	NA
M2_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	163	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999968	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	4793823	12A2p6	cell line	sgMsh2	4793823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	129	0	0	NA	exonic	Gria4	synonymous SNV	"Gria4:NM_001113180:exon3:c.T234C:p.A78A,Gria4:NM_001113181:exon3:c.T234C:p.A78A,Gria4:NM_019691:exon3:c.T234C:p.A78A"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	5323725	12A2p6	cell line	sgMsh2	5323725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	267	0	0	NA	exonic	Casp4	nonsynonymous SNV	"Casp4:NM_001379319:exon3:c.A110G:p.D37G,Casp4:NM_001379322:exon3:c.A110G:p.D37G,Casp4:NM_001379318:exon4:c.A293G:p.D98G,Casp4:NM_001379320:exon4:c.A461G:p.D154G,Casp4:NM_001379323:exon4:c.A221G:p.D74G,Casp4:NM_007609:exon4:c.A461G:p.D154G"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	3.86E-09	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	247	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.811068138	1	0.8994643	ATG	synonymous	GAT	8	GATGATGA	NA
M2_p20	chr9	5354540	12A2p6	cell line	sgMsh2	5354540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	352	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon8:c.A908G:p.N303S	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	103	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.9994536	TCA	synonymous	NA	NA	NA	NA
M2_p20	chr9	7203454	12A2p6	cell line	sgMsh2	7203454	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	120	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	"Dcun1d5:NM_001357483:exon6:c.A454G:p.K152E,Dcun1d5:NM_001357484:exon6:c.A247G:p.K83E,Dcun1d5:NM_029775:exon6:c.A454G:p.K152E"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.867003872	1	0.9856197	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	347	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.862342561	1	0.9998094	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	7561455	12A2p6	cell line	sgMsh2	7561455	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	258	0	0	NA	exonic	Mmp8	synonymous SNV	Mmp8:NM_008611:exon3:c.G459A:p.Q153Q	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.219081624	3	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	8649343	12A2p6	cell line	sgMsh2	8649343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	200	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.A1553G:p.K518R	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	8649367	12A2p6	cell line	sgMsh2	8649367	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	225	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.A1577G:p.N526S	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.16314589	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	9048879	12A2p6	cell line	sgMsh2	9048879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	320	0	0	NA	exonic	Arhgap42	nonsynonymous SNV	"Arhgap42:NM_001372569:exon6:c.A639G:p.I213M,Arhgap42:NM_001372570:exon6:c.A615G:p.I205M,Arhgap42:NM_001372568:exon7:c.A711G:p.I237M"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.08E-09	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	10144146	12A2p6	cell line	sgMsh2	10144146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	285	0	0	NA	exonic	Cntn5	nonsynonymous SNV	Cntn5:NM_001170787:exon6:c.T517G:p.L173V	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.85E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	13812639	12A2p6	cell line	sgMsh2	13812639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	185	0	0	NA	exonic	Cep57	synonymous SNV	Cep57:NM_026665:exon8:c.T882G:p.A294A	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999993	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.24	151	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999928	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	15007577	12A2p6	cell line	sgMsh2	15007577	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	182	0	0	NA	exonic	Panx1	nonsynonymous SNV	Panx1:NM_019482:exon4:c.C985A:p.L329I	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999991	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	15862819	12A2p6	cell line	sgMsh2	15862819	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	exonic	Mtnr1b	nonsynonymous SNV	Mtnr1b:NM_145712:exon2:c.T943A:p.F315I	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9996216	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	15924949	12A2p6	cell line	sgMsh2	15924949	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	97	0	0	NA	exonic	Fat3	synonymous SNV	Fat3:NM_001080814:exon23:c.A12270C:p.T4090T	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9997228	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	175	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999986	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	15999199	12A2p6	cell line	sgMsh2	15999199	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	300	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.C5518G:p.H1840D	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.722503227	2	0.9989668	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	16021450	12A2p6	cell line	sgMsh2	16021450	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.263	160	0	0	NA	exonic	Fat3	frameshift insertion	Fat3:NM_001080814:exon7:c.4197dupG:p.N1400Efs*2	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TTC	frameshift	C	5	CCCCC	1
M2_p20	chr9	16375274	12A2p6	cell line	sgMsh2	16375274	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	222	0	0	NA	exonic	Fat3	synonymous SNV	Fat3:NM_001080814:exon2:c.T2964C:p.S988S	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9806176	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	136	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M2_p20	chr9	18498644	12A2p6	cell line	sgMsh2	18498644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	217	0	0	NA	exonic	Muc16	nonsynonymous SNV	Muc16:NM_001378248:exon84:c.T26108C:p.V8703A	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	19497316	12A2p6	cell line	sgMsh2	19497316	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	166	0	0	NA	exonic	Olfr851	stopgain	Olfr851:NM_146905:exon1:c.C567A:p.C189X	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999974	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	200	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.871665183	1	0.9981213	TAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	20027241	12A2p6	cell line	sgMsh2	20027241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	180	0	0	NA	exonic	Olfr866	synonymous SNV	Olfr866:NM_146558:exon1:c.C696A:p.P232P	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.999999	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	20101115	12A2p6	cell line	sgMsh2	20101115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	294	0	0	NA	exonic	Olfr868	nonsynonymous SNV	Olfr868:NM_146559:exon2:c.G355T:p.A119S	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	4.32E-08	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	20772164	12A2p6	cell line	sgMsh2	20772164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	355	0	0	NA	exonic	Col5a3	nonsynonymous SNV	"Col5a3:NM_001317388:exon64:c.T4708C:p.C1570R,Col5a3:NM_016919:exon64:c.T4711C:p.C1571R"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.536050781	2	1.31E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	141	0	0	NA	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9988009	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	107	0	0	NA	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9982746	CAA	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr9	21244606	12A2p6	cell line	sgMsh2	21244606	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	36	0	0	NA	exonic	S1pr5	nonsynonymous SNV	S1pr5:NM_053190:exon3:c.T523A:p.C175S	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9832161	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21348598	12A2p6	cell line	sgMsh2	21348598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	269	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon20:c.C1895T:p.P632L,Slc44a2:NM_001359227:exon20:c.C1895T:p.P632L,Slc44a2:NM_152808:exon20:c.C1901T:p.P634L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	3.50E-09	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21420094	12A2p6	cell line	sgMsh2	21420094	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	73	0	0	NA	exonic	Qtrt1	nonsynonymous SNV	Qtrt1:NM_021888:exon10:c.T1118A:p.V373E	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.913616983	1	0.9877483	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	78	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.000999602	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	63	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9972517	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	65	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9975982	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M2_p20	chr9	22249279	12A2p6	cell line	sgMsh2	22249279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	302	0	0	NA	exonic	Zfp599	nonsynonymous SNV	Zfp599:NM_181419:exon5:c.T1589C:p.L530P	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.713180604	2	0.9996309	AAG	nonsynonymous	AGTG	12	AGTGAGTGAGTG	NA
M2_p20	chr9	22380304	12A2p6	cell line	sgMsh2	22380304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	148	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon3:c.T227G:p.I76S	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999912	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	223	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	136	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999801	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M2_p20	chr9	27331794	12A2p6	cell line	sgMsh2	27331794	A	-	Deletion	Mutect2;Vardict	2	0.107	64	0	0	NA	exonic	Igsf9b	frameshift deletion	Igsf9b:NM_001326702:exon16:c.2275delA:p.K759Nfs*27	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.498760292	NA	NA	CAA	frameshift	AGCGCA	13	AGCGCAAGCGCAA	-1
M2_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	34	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.980835	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	30959337	12A2p6	cell line	sgMsh2	30959337	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	109	0	0	NA	exonic	Adamts8	nonsynonymous SNV	"Adamts8:NM_001326292:exon7:c.A952G:p.T318A,Adamts8:NM_013906:exon8:c.A2107G:p.T703A"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.708519293	2	0.878787	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	71	0	0	NA	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9983971	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	123	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.94158485	1	0.9994264	CGC	synonymous	NA	NA	NA	NA
M2_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	414	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	32397430	12A2p6	cell line	sgMsh2	32397430	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	166	0	0	NA	exonic	Kcnj1	nonsynonymous SNV	"Kcnj1:NM_001168354:exon2:c.A1149C:p.E383D,Kcnj1:NM_019659:exon2:c.A1089C:p.E363D"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.922939606	1	0.9997816	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	36	0	0	NA	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9832161	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	237	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.27E-08	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	36719601	12A2p6	cell line	sgMsh2	36719601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	103	0	0	NA	exonic	Chek1	synonymous SNV	Chek1:NM_007691:exon6:c.T516C:p.P172P	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.517405536	2	0.9962598	AAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	36747934	12A2p6	cell line	sgMsh2	36747934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	65	0	0	NA	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon10:c.A1108G:p.M370V	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	0.09108325	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37241299	12A2p6	cell line	sgMsh2	37241299	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	256	0	0	NA	exonic	Slc37a2	stopgain	"Slc37a2:NM_001145960:exon3:c.G225A:p.W75X,Slc37a2:NM_020258:exon3:c.G225A:p.W75X"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.265694735	3	1.04E-09	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37315763	12A2p6	cell line	sgMsh2	37315763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	65	0	0	NA	exonic	Ccdc15	nonsynonymous SNV	Ccdc15:NM_001081429:exon7:c.G875A:p.G292D	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.792422894	1	0.7966299	GCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	59	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9964023	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37427460	12A2p6	cell line	sgMsh2	37427460	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	98	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon6:c.C951A:p.S317R	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9974355	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	170	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.999998	TAT	synonymous	NA	NA	NA	NA
M2_p20	chr9	37651311	12A2p6	cell line	sgMsh2	37651311	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	74	0	0	NA	exonic	Tbrg1	nonsynonymous SNV	Tbrg1:NM_025289:exon6:c.T800G:p.L267R	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.950907472	1	0.9954191	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	466	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Vardict	2	0.121	145	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.564018648	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M2_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	256	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	7.01E-09	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	38116085	12A2p6	cell line	sgMsh2	38116085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	443	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T288C:p.C96C	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr9	38116526	12A2p6	cell line	sgMsh2	38116526	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	464	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T729C:p.H243H	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M2_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	585	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	479	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
M2_p20	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	286	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.79E-09	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	38736126	12A2p6	cell line	sgMsh2	38736126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	97	0	0	NA	exonic	Vwa5a	synonymous SNV	"Vwa5a:NM_001145957:exon14:c.G1800A:p.Q600Q,Vwa5a:NM_172767:exon15:c.G1800A:p.Q600Q"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997228	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	38741767	12A2p6	cell line	sgMsh2	38741767	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	230	0	0	NA	exonic	Vwa5a	synonymous SNV	"Vwa5a:NM_001145957:exon19:c.C2376A:p.G792G,Vwa5a:NM_172767:exon20:c.C2376A:p.G792G"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.77843896	2	0.6084425	GCG	synonymous	NA	NA	NA	NA
M2_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	309	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.17E-09	GCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	337	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.03E-09	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	38855407	12A2p6	cell line	sgMsh2	38855407	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	548	0	0	NA	exonic	Olfr26	nonsynonymous SNV	Olfr26:NM_146783:exon1:c.T344A:p.L115Q	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	38930439	12A2p6	cell line	sgMsh2	38930439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	369	0	0	NA	exonic	Olfr930	synonymous SNV	Olfr930:NM_146272:exon1:c.A267G:p.K89K	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	AAA	synonymous	A	5	AAAAA	NA
M2_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	314	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.12E-09	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	255	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	7.43E-09	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39046794	12A2p6	cell line	sgMsh2	39046794	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	237	0	0	NA	exonic	Olfr936	synonymous SNV	Olfr936:NM_207139:exon1:c.C624T:p.F208F	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.27E-08	CGA	synonymous	A	5	AAAAA	NA
M2_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	200	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39185005	12A2p6	cell line	sgMsh2	39185005	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	472	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.G826A:p.V276M	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39257729	12A2p6	cell line	sgMsh2	39257729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	282	0	0	NA	exonic	Olfr945	synonymous SNV	Olfr945:NM_146506:exon1:c.A951G:p.E317E	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.04E-09	CTT	synonymous	NA	NA	NA	NA
M2_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	355	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39319215	12A2p6	cell line	sgMsh2	39319215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	410	0	0	NA	exonic	Olfr948	nonsynonymous SNV	Olfr948:NM_001011756:exon1:c.A398G:p.N133S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39550717	12A2p6	cell line	sgMsh2	39550717	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	133	0	0	NA	exonic	Olfr958	synonymous SNV	Olfr958:NM_146330:exon1:c.C153T:p.S51S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.932262228	1	0.9994516	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	278	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.36E-09	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr9	39593690	12A2p6	cell line	sgMsh2	39593690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	171	0	0	NA	exonic	AW551984	nonsynonymous SNV	"AW551984:NM_001199556:exon13:c.T1505C:p.L502P,AW551984:NM_001359951:exon13:c.T1505C:p.L502P,AW551984:NM_178737:exon13:c.T1505C:p.L502P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999981	TAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39597134	12A2p6	cell line	sgMsh2	39597134	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	193	0	0	NA	exonic	AW551984	nonsynonymous SNV	"AW551984:NM_001199556:exon10:c.C1085T:p.A362V,AW551984:NM_001359951:exon10:c.C1085T:p.A362V,AW551984:NM_178737:exon10:c.C1085T:p.A362V"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.9999918	CGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39623382	12A2p6	cell line	sgMsh2	39623382	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	335	0	0	NA	exonic	Olfr960	synonymous SNV	Olfr960:NM_146279:exon1:c.A258T:p.S86S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.484776359	2	0.9999795	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	39623424	12A2p6	cell line	sgMsh2	39623424	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	442	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.A300T:p.Q100H	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.629277004	2	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	39623826	12A2p6	cell line	sgMsh2	39623826	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	554	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.G702C:p.R234S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.517405536	2	1.00E-09	GGC	nonsynonymous	AGGC	10	AGGCAGGCAG	NA
M2_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	427	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.974214028	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	40101259	12A2p6	cell line	sgMsh2	40101259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	152	0	0	NA	exonic	Olfr984	nonsynonymous SNV	Olfr984:NM_146608:exon1:c.C230T:p.T77I	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999932	AGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	81	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.65258356	2	0.9319435	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	40803488	12A2p6	cell line	sgMsh2	40803488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	228	0	0	NA	exonic	Hspa8	nonsynonymous SNV	"Hspa8:NM_001364480:exon5:c.A1022G:p.N341S,Hspa8:NM_031165:exon5:c.A1079G:p.N360S"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	4.94E-08	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	198	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999997	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M2_p20	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	57	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.978875339	1	0.9937728	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	42359237	12A2p6	cell line	sgMsh2	42359237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	147	0	0	NA	exonic	Tecta	synonymous SNV	"Tecta:NM_001324548:exon12:c.G3774A:p.L1258L,Tecta:NM_009347:exon12:c.G3774A:p.L1258L,Tecta:NM_001378602:exon13:c.G3774A:p.L1258L"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.978875339	1	0.9999723	GCA	synonymous	GCAG	8	GCAGGCAG	NA
M2_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	206	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.908955672	1	0.9998849	CAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	117	0	0	NA	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999282	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	44107758	12A2p6	cell line	sgMsh2	44107758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	18	0	0	NA	exonic	C1qtnf5	nonsynonymous SNV	"C1qtnf5:NM_001040631:exon2:c.A1G:p.M1V,C1qtnf5:NM_001040632:exon2:c.A1G:p.M1V,C1qtnf5:NM_001190319:exon2:c.A1G:p.M1V,C1qtnf5:NM_001190313:exon13:c.A1G:p.M1V,C1qtnf5:NM_145613:exon13:c.A1G:p.M1V"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9454772	CAT	nonsynonymous	CAC	8	CACCACCA	NA
M2_p20	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	15	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9338748	ACG	synonymous	NA	NA	NA	NA
M2_p20	chr9	44389377	12A2p6	cell line	sgMsh2	44389377	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	60	0	0	NA	exonic	Hyou1	synonymous SNV	Hyou1:NM_021395:exon23:c.A2742G:p.P914P	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.582663892	2	0.9480945	CAC	synonymous	GCCACG	15	GCCACGGCCACGGCC	NA
M2_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	208	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M2_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	44	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9901535	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	129	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999681	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	45684311	12A2p6	cell line	sgMsh2	45684311	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	134	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon10:c.G2160T:p.K720N	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999772	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	45867960	12A2p6	cell line	sgMsh2	45867960	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	74	0	0	NA	exonic	Rnf214	nonsynonymous SNV	"Rnf214:NM_001310839:exon11:c.C1026G:p.S342R,Rnf214:NM_001310840:exon11:c.C1026G:p.S342R,Rnf214:NM_001361112:exon11:c.C1491G:p.S497R,Rnf214:NM_001361113:exon11:c.C1326G:p.S442R,Rnf214:NM_001361114:exon11:c.C1026G:p.S342R,Rnf214:NM_178709:exon11:c.C1491G:p.S497R"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9986907	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	45942733	12A2p6	cell line	sgMsh2	45942733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	0	0	NA	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_172257:exon20:c.A1933G:p.T645A,Sidt2:NM_001289668:exon21:c.A1996G:p.T666A,Sidt2:NM_001359653:exon21:c.A1945G:p.T649A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	109	0	0	NA	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.9996119	CTC	synonymous	NA	NA	NA	NA
M2_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	84	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.988197962	1	0.999061	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	49115581	12A2p6	cell line	sgMsh2	49115581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	78	0	0	NA	exonic	Tmprss5	synonymous SNV	"Tmprss5:NM_001359460:exon12:c.A1323G:p.V441V,Tmprss5:NM_030709:exon12:c.A1293G:p.V431V"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.000999602	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	49416251	12A2p6	cell line	sgMsh2	49416251	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	111	0	0	NA	exonic	Ankk1	nonsynonymous SNV	"Ankk1:NM_001376951:exon8:c.G1630A:p.V544M,Ankk1:NM_172922:exon8:c.G1627A:p.V543M"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9998923	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	50581694	12A2p6	cell line	sgMsh2	50581694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	124	0	0	NA	exonic	Il18	nonsynonymous SNV	"Il18:NM_001357221:exon7:c.A559G:p.T187A,Il18:NM_008360:exon8:c.A559G:p.T187A"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999552	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	51233222	12A2p6	cell line	sgMsh2	51233222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	258	0	0	NA	exonic	Pou2af1	synonymous SNV	Pou2af1:NM_011136:exon4:c.A435G:p.P145P	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	6.25E-09	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	52068136	12A2p6	cell line	sgMsh2	52068136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	284	0	0	NA	exonic	Rdx	synonymous SNV	"Rdx:NM_001104616:exon7:c.T558C:p.D186D,Rdx:NM_001104617:exon7:c.T558C:p.D186D,Rdx:NM_009041:exon7:c.T558C:p.D186D"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.89963305	1	0.9999828	ATT	synonymous	NA	NA	NA	NA
M2_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	327	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.997520584	1	1.07E-09	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	53372471	12A2p6	cell line	sgMsh2	53372471	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	140	0	0	NA	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.C851T:p.P284L	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999848	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	53373509	12A2p6	cell line	sgMsh2	53373509	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	127	0	0	NA	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.A1889G:p.D630G	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.344937024	3	0.99696	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	316	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	1.10E-09	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	54027626	12A2p6	cell line	sgMsh2	54027626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	203	0	0	NA	exonic	Tnfaip8l3	nonsynonymous SNV	Tnfaip8l3:NM_001033535:exon2:c.T64C:p.F22L	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	154	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999941	CAT	synonymous	NA	NA	NA	NA
M2_p20	chr9	54598427	12A2p6	cell line	sgMsh2	54598427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	259	0	0	NA	exonic	Idh3a	nonsynonymous SNV	Idh3a:NM_029573:exon7:c.A646G:p.R216G	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.843697316	1	0.994172	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	54764968	12A2p6	cell line	sgMsh2	54764968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	89	0	0	NA	exonic	Crabp1	frameshift deletion	"Crabp1:NM_001284507:exon1:c.67delT:p.L23Wfs*2,Crabp1:NM_013496:exon1:c.67delT:p.L23Wfs*2"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M2_p20	chr9	55542173	12A2p6	cell line	sgMsh2	55542173	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	65	0	0	NA	exonic	Isl2	synonymous SNV	Isl2:NM_027397:exon2:c.C132T:p.P44P	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.992859273	1	0.9971814	CCG	synonymous	NA	NA	NA	NA
M2_p20	chr9	56258360	12A2p6	cell line	sgMsh2	56258360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	90	0	0	NA	exonic	Peak1	synonymous SNV	Peak1:NM_172924:exon4:c.A2283G:p.K761K	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995553	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M2_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	1275	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.149161956	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	275	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.67E-09	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M2_p20	chr9	57113661	12A2p6	cell line	sgMsh2	57113661	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	359	0	0	NA	exonic	Sin3a	synonymous SNV	"Sin3a:NM_001110350:exon16:c.T2970A:p.I990I,Sin3a:NM_001357754:exon16:c.T2970A:p.I990I,Sin3a:NM_001110351:exon17:c.T2970A:p.I990I,Sin3a:NM_011378:exon17:c.T2970A:p.I990I"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.727164538	2	0.9996544	TTC	synonymous	NA	NA	NA	NA
M2_p20	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	47	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9919449	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	57138906	12A2p6	cell line	sgMsh2	57138906	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	83	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon14:c.G1640C:p.S547T	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.354259647	3	0.9588931	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	57156215	12A2p6	cell line	sgMsh2	57156215	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	200	0	0	NA	exonic	Commd4	nonsynonymous SNV	Commd4:NM_025417:exon5:c.T258G:p.S86R	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.722503227	2	0.9826455	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	57241889	12A2p6	cell line	sgMsh2	57241889	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	134	0	0	NA	exonic	Trcg1	nonsynonymous SNV	Trcg1:NM_001014398:exon3:c.T743G:p.L248R	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.200436379	3	3.19E-08	CTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	57792568	12A2p6	cell line	sgMsh2	57792568	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	53	0	0	NA	exonic	Arid3b	nonsynonymous SNV	"Arid3b:NM_019689:exon8:c.C1655T:p.T552I,Arid3b:NM_001379353:exon9:c.C1655T:p.T552I"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9946143	GGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	58033686	12A2p6	cell line	sgMsh2	58033686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	40	0	0	NA	exonic	Ccdc33	synonymous SNV	"Ccdc33:NM_001166282:exon12:c.G1827A:p.Q609Q,Ccdc33:NM_001311085:exon12:c.G1272A:p.Q424Q,Ccdc33:NM_029212:exon12:c.G1272A:p.Q424Q"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9871385	TCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	161	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999963	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	168	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M2_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	207	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	GGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	179	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999989	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	61410034	12A2p6	cell line	sgMsh2	61410034	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	97	0	0	NA	exonic	Tle3	nonsynonymous SNV	"Tle3:NM_001083927:exon13:c.A1189C:p.S397R,Tle3:NM_001083928:exon13:c.A1150C:p.S384R,Tle3:NM_009389:exon13:c.A1159C:p.S387R"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.442824558	2	0.7637683	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	62752310	12A2p6	cell line	sgMsh2	62752310	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.104	73	0	0	NA	exonic	Itga11	nonsynonymous SNV	Itga11:NM_176922:exon12:c.T1343C:p.F448S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.484776359	2	0.9403215	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	88	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.999491	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	22	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.957888	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	64949308	12A2p6	cell line	sgMsh2	64949308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	178	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon2:c.A316G:p.I106V	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.955568784	1	0.999982	ATG	nonsynonymous	TGCTA	10	TGCTATGCTA	NA
M2_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	330	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.04E-09	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999995	GTA	synonymous	NA	NA	NA	NA
M2_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	207	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999998	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M2_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	306	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.21E-09	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9972517	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	70301742	12A2p6	cell line	sgMsh2	70301742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	251	0	0	NA	exonic	Myo1e	nonsynonymous SNV	Myo1e:NM_181072:exon4:c.A287G:p.Y96C	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.540712092	2	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	143	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999876	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	104	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998272	GTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	122	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999488	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	177	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999988	AAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	75009121	12A2p6	cell line	sgMsh2	75009121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	91	0	0	NA	exonic	Fam214a	nonsynonymous SNV	"Fam214a:NM_153584:exon5:c.T1022C:p.V341A,Fam214a:NM_001113283:exon6:c.T1001C:p.V334A,Fam214a:NM_001359816:exon6:c.T1001C:p.V334A"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9995843	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.155	160	0	0	NA	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.722503227	2	0.9479124	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	246	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.28E-08	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	78258794	12A2p6	cell line	sgMsh2	78258794	T	C	SNV	Mutect2;Vardict	2	0.074	173	0	0	NA	exonic	Gm3776	nonsynonymous SNV	Gm3776:NM_001243092:exon2:c.T83C:p.V28A	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.344937024	3	0.9996936	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	286	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.79E-09	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	192	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999995	TTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	78577206	12A2p6	cell line	sgMsh2	78577206	A	-	Deletion	Strelka2;Vardict	2	0.3529	34	0	0	NA	exonic	Slc17a5	frameshift deletion	Slc17a5:NM_172773:exon3:c.349delT:p.Y117Tfs*27	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M2_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	155	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999945	GTT	synonymous	NA	NA	NA	NA
M2_p20	chr9	79700292	12A2p6	cell line	sgMsh2	79700292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	224	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon9:c.T1253C:p.V418A	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	82871711	12A2p6	cell line	sgMsh2	82871711	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	269	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon40:c.G4979A:p.G1660D	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	3.50E-09	ACC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	228	0	0	NA	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.98353665	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	235	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	2.58E-08	ATT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.25	28	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M2_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	142	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999867	TAG	synonymous	NA	NA	NA	NA
M2_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	84	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	TTT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	97	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9997228	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	88567183	12A2p6	cell line	sgMsh2	88567183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	174	0	0	NA	exonic	Zfp949	nonsynonymous SNV	"Zfp949:NM_001163061:exon3:c.A40G:p.T14A,Zfp949:NM_001142943:exon4:c.A40G:p.T14A"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999985	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	89596689	12A2p6	cell line	sgMsh2	89596689	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	68	0	0	NA	exonic	Minar1	nonsynonymous SNV	Minar1:NM_153509:exon3:c.C2303T:p.A768V	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.811068138	1	0.8570481	TGC	nonsynonymous	CTGC	16	CTGCCTGTCTGCCTGC	NA
M2_p20	chr9	91361644	12A2p6	cell line	sgMsh2	91361644	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	81	0	0	NA	exonic	Zic1	synonymous SNV	"Zic1:NM_009573:exon3:c.G1269A:p.S423S,Zic1:NM_001376941:exon4:c.G1269A:p.S423S"	9qE3.2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9991836	GCG	synonymous	NA	NA	NA	NA
M2_p20	chr9	95921773	12A2p6	cell line	sgMsh2	95921773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	76	0	0	NA	exonic	Atr	synonymous SNV	Atr:NM_019864:exon33:c.C5679A:p.S1893S	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.998856	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	95970760	12A2p6	cell line	sgMsh2	95970760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	272	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon6:c.A659G:p.H220R,Xrn1:NM_011916:exon6:c.A659G:p.H220R"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	3.04E-09	CAT	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	162	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999966	GAA	nonsynonymous	T	5	TTTTT	NA
M2_p20	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.29	149	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M2_p20	chr9	96557474	12A2p6	cell line	sgMsh2	96557474	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	201	0	0	NA	exonic	Rasa2	nonsynonymous SNV	Rasa2:NM_053268:exon17:c.C1675T:p.R559W	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999998	CGT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	96688269	12A2p6	cell line	sgMsh2	96688269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	260	0	0	NA	exonic	Zbtb38	nonsynonymous SNV	"Zbtb38:NM_001359959:exon3:c.A761G:p.D254G,Zbtb38:NM_001359960:exon3:c.A761G:p.D254G,Zbtb38:NM_175537:exon3:c.A761G:p.D254G"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.298323913	3	4.70E-09	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	180	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.999999	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	180	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.9999932	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	79	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M2_p20	chr9	100803322	12A2p6	cell line	sgMsh2	100803322	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	98	0	0	NA	exonic	Stag1	synonymous SNV	"Stag1:NM_001357264:exon8:c.T459C:p.S153S,Stag1:NM_009282:exon9:c.T870C:p.S290S"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.302985224	3	0.9987853	CTA	synonymous	NA	NA	NA	NA
M2_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	411	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	71	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.871665183	1	0.9639049	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	65	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.829713383	1	0.09946439	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	104176768	12A2p6	cell line	sgMsh2	104176768	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	259	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon42:c.C4888T:p.L1630L,Dnajc13:NM_001359740:exon43:c.C4903T:p.L1635L"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	5.91E-09	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	185	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999993	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	106077388	12A2p6	cell line	sgMsh2	106077388	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	125	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T751A:p.F251I	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999582	AAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	110	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9894748	CAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	59	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.85768125	1	0.9382817	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	39	0	0	NA	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9862522	GCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	106682111	12A2p6	cell line	sgMsh2	106682111	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	26	0	0	NA	exonic	Tex264	synonymous SNV	"Tex264:NM_001081654:exon3:c.A15G:p.L5L,Tex264:NM_001286498:exon3:c.A15G:p.L5L,Tex264:NM_011573:exon3:c.A15G:p.L5L"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.880987805	1	0.9109054	GTA	synonymous	AGT	8	AGTAGTAG	NA
M2_p20	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	84	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	107300710	12A2p6	cell line	sgMsh2	107300710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	72	0	0	NA	exonic	Cish	nonsynonymous SNV	"Cish:NM_001317354:exon2:c.C290T:p.S97L,Cish:NM_009895:exon3:c.C584T:p.S195L"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.839036005	1	0.9238589	TCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	139	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999837	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	114	0	0	NA	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999121	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	181	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.999999	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	138	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.792422894	1	0.7423355	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	108421559	12A2p6	cell line	sgMsh2	108421559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	213	0	0	NA	exonic	Iho1	nonsynonymous SNV	"Iho1:NM_001135198:exon3:c.T59C:p.I20T,Iho1:NM_001379658:exon3:c.T59C:p.I20T"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.918278294	1	0.999955	GAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	108489496	12A2p6	cell line	sgMsh2	108489496	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	47	0	0	NA	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon30:c.G4828T:p.A1610S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9919449	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	108	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2_p20	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	82	0	0	NA	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9992369	CCT	synonymous	NA	NA	NA	NA
M2_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	84	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9993332	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	116	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr9	109027595	12A2p6	cell line	sgMsh2	109027595	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	79	0	0	NA	exonic	Pfkfb4	nonsynonymous SNV	Pfkfb4:NM_173019:exon11:c.T1168C:p.C390R	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.36824358	3	0.9117411	TTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	76	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.998856	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	110035410	12A2p6	cell line	sgMsh2	110035410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	116	0	0	NA	exonic	Map4	nonsynonymous SNV	"Map4:NM_001205330:exon7:c.A1702G:p.T568A,Map4:NM_001205332:exon7:c.A1702G:p.T568A,Map4:NM_008633:exon7:c.A1702G:p.T568A"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999232	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	110088237	12A2p6	cell line	sgMsh2	110088237	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	203	0	0	NA	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon8:c.A1209C:p.P403P,Dhx30:NM_133347:exon11:c.A1191C:p.P397P,Dhx30:NM_001252682:exon12:c.A1122C:p.P374P"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9999998	CTG	synonymous	NA	NA	NA	NA
M2_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	224	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	210	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999999	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M2_p20	chr9	110511366	12A2p6	cell line	sgMsh2	110511366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	143	0	0	NA	exonic	Kif9	stopgain	"Kif9:NM_001163569:exon15:c.G1426T:p.G476X,Kif9:NM_010628:exon15:c.G1426T:p.G476X"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999876	TGG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	110	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9998848	ATA	synonymous	NA	NA	NA	NA
M2_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	72	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9985017	GGA	nonsynonymous	G	5	GGGGG	NA
M2_p20	chr9	110634008	12A2p6	cell line	sgMsh2	110634008	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	52	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon27:c.G3988A:p.D1330N	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.9942402	TCA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	111392970	12A2p6	cell line	sgMsh2	111392970	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	85	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon20:c.T8774G:p.L2925R	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.619954382	2	0.9777632	CTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	111467863	12A2p6	cell line	sgMsh2	111467863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	38	0	0	NA	exonic	Dclk3	synonymous SNV	Dclk3:NM_172928:exon2:c.T474C:p.S158S	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9853057	GTG	synonymous	NA	NA	NA	NA
M2_p20	chr9	112136475	12A2p6	cell line	sgMsh2	112136475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	56	0	0	NA	exonic	Arpp21	nonsynonymous SNV	"Arpp21:NM_001177617:exon11:c.A1120G:p.I374V,Arpp21:NM_001177616:exon13:c.A1267G:p.I423V,Arpp21:NM_001177618:exon13:c.A1327G:p.I443V,Arpp21:NM_001362014:exon13:c.A1327G:p.I443V,Arpp21:NM_001362016:exon13:c.A1267G:p.I423V,Arpp21:NM_001362017:exon13:c.A1267G:p.I423V,Arpp21:NM_001362018:exon13:c.A1267G:p.I423V,Arpp21:NM_001362038:exon13:c.A1267G:p.I423V,Arpp21:NM_001362039:exon13:c.A1267G:p.I423V,Arpp21:NM_001362010:exon14:c.A1327G:p.I443V,Arpp21:NM_001362011:exon14:c.A1327G:p.I443V,Arpp21:NM_001362012:exon14:c.A1327G:p.I443V,Arpp21:NM_001362015:exon14:c.A1327G:p.I443V,Arpp21:NM_001362028:exon14:c.A1369G:p.I457V,Arpp21:NM_001362029:exon14:c.A1369G:p.I457V,Arpp21:NM_001362030:exon14:c.A1366G:p.I456V,Arpp21:NM_001362031:exon14:c.A1366G:p.I456V,Arpp21:NM_001362032:exon14:c.A1366G:p.I456V,Arpp21:NM_001362033:exon14:c.A1366G:p.I456V,Arpp21:NM_001362034:exon14:c.A1324G:p.I442V,Arpp21:NM_001362035:exon14:c.A1324G:p.I442V,Arpp21:NM_001362036:exon14:c.A1327G:p.I443V,Arpp21:NM_001362037:exon14:c.A1327G:p.I443V,Arpp21:NM_033264:exon14:c.A1426G:p.I476V,Arpp21:NM_001362013:exon15:c.A1327G:p.I443V,Arpp21:NM_001362020:exon15:c.A1429G:p.I477V,Arpp21:NM_001362021:exon15:c.A1429G:p.I477V,Arpp21:NM_001362022:exon15:c.A1426G:p.I476V,Arpp21:NM_001362023:exon15:c.A1426G:p.I476V,Arpp21:NM_001362024:exon15:c.A1426G:p.I476V,Arpp21:NM_001362025:exon15:c.A1426G:p.I476V,Arpp21:NM_001362026:exon15:c.A1426G:p.I476V,Arpp21:NM_001362027:exon15:c.A1423G:p.I475V,Arpp21:NM_001362040:exon15:c.A580G:p.I194V,Arpp21:NM_001362041:exon15:c.A577G:p.I193V"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	0.9905423	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	42	0	0	NA	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.964891406	1	0.9814028	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	82	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9992369	ATC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chr9	117959990	12A2p6	cell line	sgMsh2	117959990	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.193	117	0	0	NA	exonic	Zcwpw2	frameshift insertion	Zcwpw2:NM_001378466:exon5:c.585dupA:p.A196Sfs*14	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.89963305	NA	NA	GCT	frameshift	NA	NA	NA	1
M2_p20	chr9	118577156	12A2p6	cell line	sgMsh2	118577156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	305	0	0	NA	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon23:c.T6621C:p.V2207V	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.22E-09	TTA	synonymous	NA	NA	NA	NA
M2_p20	chr9	119081077	12A2p6	cell line	sgMsh2	119081077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	0	0	NA	exonic	Plcd1	nonsynonymous SNV	"Plcd1:NM_001293648:exon3:c.A351G:p.I117M,Plcd1:NM_019676:exon3:c.A273G:p.I91M"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9981657	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	268	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.792422894	1	0.6250497	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	104	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.834374694	1	0.9375743	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	154	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999941	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M2_p20	chr9	119782012	12A2p6	cell line	sgMsh2	119782012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	137	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon17:c.C2772A:p.A924A	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.960230095	1	0.9998777	AGG	synonymous	NA	NA	NA	NA
M2_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	78	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	2	1	1	0.000999602	CCC	synonymous	NA	NA	NA	NA
M2_p20	chr9	121965093	12A2p6	cell line	sgMsh2	121965093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	exonic	Gask1a	synonymous SNV	"Gask1a:NM_001199927:exon2:c.T360C:p.D120D,Gask1a:NM_177743:exon2:c.T312C:p.D104D"	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9970603	ATC	synonymous	NA	NA	NA	NA
M2_p20	chr9	122975797	12A2p6	cell line	sgMsh2	122975797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	168	0	0	NA	exonic	Kif15	nonsynonymous SNV	Kif15:NM_010620:exon7:c.A608G:p.Q203R	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	0.9999977	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	123051175	12A2p6	cell line	sgMsh2	123051175	A	G	SNV	Mutect2;Vardict	2	0.045	178	0	0	NA	exonic	Tgm4	synonymous SNV	Tgm4:NM_177911:exon7:c.A711G:p.V237V	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.209759001	3	1.23E-09	TAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	120	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.843697316	1	0.9630552	CAC	synonymous	NA	NA	NA	NA
M2_p20	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	175	0	0	NA	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.969552717	1	0.999991	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	123779621	12A2p6	cell line	sgMsh2	123779621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	329	0	0	NA	exonic	Ccr9	nonsynonymous SNV	"Ccr9:NM_009913:exon3:c.A367G:p.N123D,Ccr9:NM_001166625:exon4:c.A367G:p.N123D"	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	1	1	1.04E-09	GAA	nonsynonymous	NA	NA	NA	NA
M2_p20	chr9	124029103	12A2p6	cell line	sgMsh2	124029103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	239	0	0	NA	exonic	Ccr3	synonymous SNV	Ccr3:NM_009914:exon2:c.T474C:p.S158S	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.195180026	NA	1	0.769116338	2	0.7845371	GTA	synonymous	NA	NA	NA	NA
M2_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	14	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M2_p20	chrX	7616020	12A2p6	cell line	sgMsh2	7616020	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	108	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon14:c.A1742T:p.Y581F	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	73	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.536	105	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	7896062	12A2p6	cell line	sgMsh2	7896062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	204	0	0	NA	exonic	Pqbp1	nonsynonymous SNV	"Pqbp1:NM_001252528:exon4:c.T223C:p.W75R,Pqbp1:NM_001252529:exon4:c.T316C:p.W106R,Pqbp1:NM_019478:exon4:c.T223C:p.W75R"	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	55	0	0	NA	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M2_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	184	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	13156528	12A2p6	cell line	sgMsh2	13156528	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	251	0	0	NA	exonic	Usp9x	nonsynonymous SNV	Usp9x:NM_009481:exon35:c.A5866G:p.M1956V	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	209	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	33657522	12A2p6	cell line	sgMsh2	33657522	A	C	SNV	Mutect2;Vardict	2	0.035	241	0	0	NA	exonic	Btbd35f13	nonsynonymous SNV	Btbd35f13:NM_001282034:exon1:c.A298C:p.T100P	XqA3.2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	A	5	AAAAA	NA
M2_p20	chrX	36883112	12A2p6	cell line	sgMsh2	36883112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	52	0	0	NA	exonic	Ube2a	nonsynonymous SNV	"Ube2a:NM_001313696:exon6:c.T422C:p.I141T,Ube2a:NM_019668:exon6:c.T431C:p.I144T"	XqA3.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	190	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	42683885	12A2p6	cell line	sgMsh2	42683885	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.742	50	0	0	NA	exonic	Tenm1	synonymous SNV	Tenm1:NM_011855:exon19:c.C3249T:p.N1083N	XqA4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGT	synonymous	NA	NA	NA	NA
M2_p20	chrX	43167706	12A2p6	cell line	sgMsh2	43167706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	130	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon2:c.C49T:p.H17Y	XqA4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	45092453	12A2p6	cell line	sgMsh2	45092453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	150	0	0	NA	exonic	Prr32	synonymous SNV	Prr32:NM_026841:exon2:c.T664C:p.L222L	XqA4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TTT	synonymous	NA	NA	NA	NA
M2_p20	chrX	48529872	12A2p6	cell line	sgMsh2	48529872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	95	0	0	NA	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon2:c.T482C:p.V161A	XqA5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	52056681	12A2p6	cell line	sgMsh2	52056681	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	135	0	0	NA	exonic	Gpc4	synonymous SNV	Gpc4:NM_008150:exon6:c.T1134A:p.A378A	XqA5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M2_p20	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	67	0	0	NA	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	56455218	12A2p6	cell line	sgMsh2	56455218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	77	0	0	NA	exonic	Ints6l	synonymous SNV	Ints6l:NM_172779:exon1:c.C13T:p.L5L	XqA6	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M2_p20	chrX	57244664	12A2p6	cell line	sgMsh2	57244664	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	123	0	0	NA	exonic	Arhgef6	nonsynonymous SNV	"Arhgef6:NM_001358573:exon14:c.G1183A:p.G395R,Arhgef6:NM_152801:exon15:c.G1714A:p.G572R"	XqA6	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	59067428	12A2p6	cell line	sgMsh2	59067428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	72	0	0	NA	exonic	Fgf13	nonsynonymous SNV	"Fgf13:NM_001290415:exon4:c.G415A:p.A139T,Fgf13:NM_001356335:exon4:c.G436A:p.A146T,Fgf13:NM_010200:exon4:c.G574A:p.A192T,Fgf13:NM_001290414:exon6:c.G604A:p.A202T"	XqA6	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	83	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	66654167	12A2p6	cell line	sgMsh2	66654167	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	108	0	0	NA	exonic	Slitrk2	nonsynonymous SNV	"Slitrk2:NM_198863:exon2:c.C263T:p.A88V,Slitrk2:NM_001161431:exon3:c.C263T:p.A88V"	XqA7.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	96	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M2_p20	chrX	69834464	12A2p6	cell line	sgMsh2	69834464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	33	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon10:c.A1855G:p.T619A	XqA7.2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	73421972	12A2p6	cell line	sgMsh2	73421972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	71	0	0	NA	exonic	Zfp92	synonymous SNV	"Zfp92:NM_001310531:exon5:c.C570T:p.I190I,Zfp92:NM_009566:exon6:c.C570T:p.I190I"	XqA7.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M2_p20	chrX	73491973	12A2p6	cell line	sgMsh2	73491973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	19	0	0	NA	exonic	Bgn	nonsynonymous SNV	Bgn:NM_007542:exon4:c.T380C:p.I127T	XqA7.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	142	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.652	119	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M2_p20	chrX	74640575	12A2p6	cell line	sgMsh2	74640575	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	54	0	0	NA	exonic	Gm5640	nonsynonymous SNV	Gm5640:NM_001099302:exon4:c.G904C:p.V302L	XqA7.3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	81422577	12A2p6	cell line	sgMsh2	81422577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	64	0	0	NA	exonic	4930595M18Rik	nonsynonymous SNV	4930595M18Rik:NM_173435:exon3:c.A994G:p.R332G	XqB	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	84647068	12A2p6	cell line	sgMsh2	84647068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	61	0	0	NA	exonic	Dmd	nonsynonymous SNV	Dmd:NM_007868:exon55:c.A8038G:p.T2680A	XqC1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	76	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	69	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M2_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.582	127	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.59	103	0	0	NA	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	100541121	12A2p6	cell line	sgMsh2	100541121	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.508	106	0	0	NA	exonic	Dgat2l6	frameshift deletion	Dgat2l6:NM_001114084:exon4:c.321delC:p.H109Mfs*24	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	21	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	66	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	101673342	12A2p6	cell line	sgMsh2	101673342	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	107	0	0	NA	exonic	Ogt	nonsynonymous SNV	"Ogt:NM_001290535:exon17:c.T2138G:p.F713C,Ogt:NM_139144:exon17:c.T2168G:p.F723C"	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.466	91	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M2_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	86	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M2_p20	chrX	103962705	12A2p6	cell line	sgMsh2	103962705	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	225	0	0	NA	exonic	Rlim	nonsynonymous SNV	"Rlim:NM_001358205:exon5:c.A1589C:p.D530A,Rlim:NM_011276:exon5:c.A1589C:p.D530A"	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	152	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M2_p20	chrX	105121995	12A2p6	cell line	sgMsh2	105121995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	57	0	0	NA	exonic	Magee1	nonsynonymous SNV	Magee1:NM_053201:exon1:c.A1385G:p.N462S	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	48	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	106838969	12A2p6	cell line	sgMsh2	106838969	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	30	0	0	NA	exonic	Rtl3	nonsynonymous SNV	Rtl3:NM_199468:exon2:c.T686G:p.L229R	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	131	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	108771534	12A2p6	cell line	sgMsh2	108771534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	163	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon21:c.A2459G:p.D820G	XqD	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	110814884	12A2p6	cell line	sgMsh2	110814884	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	59	0	0	NA	exonic	Pou3f4	synonymous SNV	Pou3f4:NM_008901:exon1:c.C420T:p.T140T	XqE1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M2_p20	chrX	110814921	12A2p6	cell line	sgMsh2	110814921	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.399	48	0	0	NA	exonic	Pou3f4	frameshift deletion	Pou3f4:NM_008901:exon1:c.457delC:p.P153Hfs*87	XqE1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ACC	frameshift	CAC	8	CACCACCA	-1
M2_p20	chrX	112120441	12A2p6	cell line	sgMsh2	112120441	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	119	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A2603C:p.N868T	XqE1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	120905867	12A2p6	cell line	sgMsh2	120905867	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Pcdh11x	synonymous SNV	"Pcdh11x:NM_001271810:exon6:c.C3486A:p.R1162R,Pcdh11x:NM_001271809:exon7:c.C3516A:p.R1172R"	XqE2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M2_p20	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	83	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	129957349	12A2p6	cell line	sgMsh2	129957349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	85	0	0	NA	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon12:c.T1324C:p.Y442H	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	76	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M2_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	83	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	133896744	12A2p6	cell line	sgMsh2	133896744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	175	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon3:c.T290C:p.L97P	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	40	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	133928747	12A2p6	cell line	sgMsh2	133928747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	61	0	0	NA	exonic	Srpx2	nonsynonymous SNV	"Srpx2:NM_001083895:exon8:c.A967G:p.T323A,Srpx2:NM_026838:exon9:c.A967G:p.T323A"	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M2_p20	chrX	133940478	12A2p6	cell line	sgMsh2	133940478	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	86	0	0	NA	exonic	Sytl4	nonsynonymous SNV	Sytl4:NM_013757:exon16:c.A1718C:p.K573T	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTT	nonsynonymous	TCT	8	TCTTCTTC	NA
M2_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	112	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	135307507	12A2p6	cell line	sgMsh2	135307507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	190	0	0	NA	exonic	Pramel3	synonymous SNV	Pramel3:NM_031390:exon3:c.T165C:p.I55I	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TTG	synonymous	NA	NA	NA	NA
M2_p20	chrX	135655082	12A2p6	cell line	sgMsh2	135655082	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	127	0	0	NA	exonic	Tcp11x2	synonymous SNV	Tcp11x2:NM_027952:exon10:c.C1323T:p.G441G	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGC	synonymous	NA	NA	NA	NA
M2_p20	chrX	135842568	12A2p6	cell line	sgMsh2	135842568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	40	0	0	NA	exonic	Gprasp2	synonymous SNV	"Gprasp2:NM_001359371:exon6:c.A675G:p.T225T,Gprasp2:NM_001163015:exon7:c.A675G:p.T225T,Gprasp2:NM_001163016:exon7:c.A675G:p.T225T,Gprasp2:NM_001163017:exon7:c.A675G:p.T225T"	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M2_p20	chrX	138208997	12A2p6	cell line	sgMsh2	138208998	TC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.559	71	0	0	NA	exonic	Tex13a	frameshift deletion	Tex13a:NM_026469:exon1:c.430_431del:p.D144Pfs*57	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTC	frameshift	TC	13	TCTCTCTCTCTCT	-2
M2_p20	chrX	139725807	12A2p6	cell line	sgMsh2	139725807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	101	0	0	NA	exonic	Tbc1d8b	nonsynonymous SNV	Tbc1d8b:NM_001081499:exon10:c.A1645G:p.T549A	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	139824276	12A2p6	cell line	sgMsh2	139824276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	118	0	0	NA	exonic	Morc4	nonsynonymous SNV	"Morc4:NM_001193309:exon15:c.T2039C:p.M680T,Morc4:NM_029413:exon15:c.T2039C:p.M680T"	XqF1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	143805865	12A2p6	cell line	sgMsh2	143805865	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.578	94	0	0	NA	exonic	Capn6	nonsynonymous SNV	Capn6:NM_007603:exon9:c.G1179T:p.E393D	XqF2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	71	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M2_p20	chrX	150560905	12A2p6	cell line	sgMsh2	150560905	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	73	0	0	NA	exonic	Alas2	nonsynonymous SNV	"Alas2:NM_001102446:exon7:c.C950T:p.S317F,Alas2:NM_009653:exon7:c.C995T:p.S332F"	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TCC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.43	11	0	0	NA	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M2_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	82	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	152660281	12A2p6	cell line	sgMsh2	152660281	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	0	0	NA	exonic	Shroom2	nonsynonymous SNV	"Shroom2:NM_001290684:exon4:c.T1887A:p.D629E,Shroom2:NM_172441:exon4:c.T1887A:p.D629E"	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	154484267	12A2p6	cell line	sgMsh2	154484267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	114	0	0	NA	exonic	Samt4	nonsynonymous SNV	Samt4:NM_029199:exon3:c.A401G:p.Y134C	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	154575962	12A2p6	cell line	sgMsh2	154575962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	92	0	0	NA	exonic	Samt2	synonymous SNV	Samt2:NM_001037167:exon3:c.T88C:p.L30L	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	AAA	synonymous	NA	NA	NA	NA
M2_p20	chrX	154949000	12A2p6	cell line	sgMsh2	154949000	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.478	572	0	0	NA	exonic	Magea3	frameshift insertion	Magea3:NM_020017:exon1:c.505_506insA:p.L169Hfs*5	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAG	frameshift	NA	NA	NA	1
M2_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	282	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	157470068	12A2p6	cell line	sgMsh2	157470068	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.482	73	0	0	NA	exonic	Sms	frameshift deletion	Sms:NM_009214:exon2:c.90delT:p.Q31Rfs*4	XqF4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M2_p20	chrX	159460315	12A2p6	cell line	sgMsh2	159460315	C	-	Deletion	Mutect2;Vardict	2	0.153	70	0	0	NA	exonic	Map7d2	frameshift deletion	"Map7d2:NM_001359320:exon2:c.140delC:p.P49Lfs*24,Map7d2:NM_001359321:exon2:c.140delC:p.P49Lfs*24,Map7d2:NM_001081124:exon5:c.593delC:p.P200Lfs*24,Map7d2:NM_001359310:exon5:c.593delC:p.P200Lfs*24,Map7d2:NM_001359311:exon5:c.593delC:p.P200Lfs*62,Map7d2:NM_001359314:exon5:c.593delC:p.P200Lfs*62"	XqF4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M2_p20	chrX	160127321	12A2p6	cell line	sgMsh2	160127321	C	G	SNV	Mutect2;Vardict	2	0.07	93	0	0	NA	exonic	Pdha1	nonsynonymous SNV	Pdha1:NM_008810:exon8:c.G801C:p.K267N	XqF4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	162771167	12A2p6	cell line	sgMsh2	162771167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	136	0	0	NA	exonic	Rbbp7	nonsynonymous SNV	Rbbp7:NM_009031:exon5:c.A596G:p.H199R	XqF4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M2_p20	chrX	162787645	12A2p6	cell line	sgMsh2	162787645	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	84	0	0	NA	exonic	Txlng	nonsynonymous SNV	"Txlng:NM_178935:exon6:c.C898A:p.Q300K,Txlng:NM_001290776:exon7:c.C751A:p.Q251K"	XqF4	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGC	nonsynonymous	TGT	8	TGTTGTTG	NA
M2_p20	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	54	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.966	90	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M2_p20	chrY	1336383	12A2p6	cell line	sgMsh2	1336383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.977	67	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon32:c.C4490T:p.P1497L	YqA1	NA	NA	NA	NA	0.9	4.195180026	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	3216056	12A2p6	cell line	sgMsh2	3216056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	115	0	0	NA	exonic	Xkr4	nonsynonymous SNV	Xkr4:NM_001011874:exon3:c.T1910G:p.I637S	1qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	4346756	12A2p6	cell line	sgMsh2	4346756	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	165	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C4132A:p.L1378I	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.999484	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr1	4346883	12A2p6	cell line	sgMsh2	4346883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	175	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.T4005C:p.T1335T	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.787949489	1	0.6780543	CAG	synonymous	NA	NA	NA	NA
M3	chr1	5589057	12A2p6	cell line	sgMsh2	5589057	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	49	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon2:c.C9T:p.S3S,Oprk1:NM_011011:exon2:c.C9T:p.S3S"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	CCC	synonymous	C	5	CCCCC	NA
M3	chr1	5598941	12A2p6	cell line	sgMsh2	5598941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	152	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon3:c.A609G:p.E203E,Oprk1:NM_011011:exon3:c.A609G:p.E203E"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999802	AAG	synonymous	NA	NA	NA	NA
M3	chr1	5598942	12A2p6	cell line	sgMsh2	5598942	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	148	0	0	NA	exonic	Oprk1	nonsynonymous SNV	"Oprk1:NM_001204371:exon3:c.G610A:p.D204N,Oprk1:NM_011011:exon3:c.G610A:p.D204N"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9822693	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	98	22	0.224489796	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9915312	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	6263166	12A2p6	cell line	sgMsh2	6263166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	104	58	14	0.24137931	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.T4227C:p.C1409C	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	GTG	synonymous	NA	NA	NA	NA
M3	chr1	6820123	12A2p6	cell line	sgMsh2	6820123	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	42	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon11:c.A1778C:p.K593T,St18:NM_001244693:exon12:c.A1778C:p.K593T,St18:NM_001244692:exon13:c.A1778C:p.K593T"	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.8637378	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr1	7169594	12A2p6	cell line	sgMsh2	7169594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	19	91	24	0.263736264	exonic	Pcmtd1	nonsynonymous SNV	Pcmtd1:NM_183028:exon6:c.G786T:p.E262D	1qA1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.940489	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	158	6	3	0.5	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999862	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	10037740	12A2p6	cell line	sgMsh2	10037740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	69	351	5	0.014245014	exonic	Cops5	nonsynonymous SNV	Cops5:NM_013715:exon1:c.A73G:p.I25V	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9886495	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr1	11185964	12A2p6	cell line	sgMsh2	11185964	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	102	7	0	0	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon29:c.T3558G:p.G1186G	1qA2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9995586	GTC	synonymous	NA	NA	NA	NA
M3	chr1	13125490	12A2p6	cell line	sgMsh2	13125490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	84	0	0	NA	exonic	Prdm14	nonsynonymous SNV	Prdm14:NM_001081209:exon2:c.A346G:p.T116A	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9715502	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	13167054	12A2p6	cell line	sgMsh2	13167054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	54	50	14	0.28	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon12:c.G2447A:p.S816N,Ncoa2:NM_008678:exon12:c.G2447A:p.S816N"	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.723714476	1	0.566948	ACT	nonsynonymous	ACTG	8	ACTGACTG	NA
M3	chr1	18130241	12A2p6	cell line	sgMsh2	18130241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	146	0	0	NA	exonic	Crisp4	synonymous SNV	"Crisp4:NM_001347048:exon4:c.T219C:p.S73S,Crisp4:NM_001347047:exon5:c.T336C:p.S112S"	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	AAC	synonymous	NA	NA	NA	NA
M3	chr1	19119216	12A2p6	cell line	sgMsh2	19119216	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	114	0	0	NA	exonic	Tfap2d	synonymous SNV	"Tfap2d:NM_001379073:exon4:c.C831T:p.G277G,Tfap2d:NM_001379074:exon5:c.C747T:p.G249G,Tfap2d:NM_153154:exon5:c.C819T:p.G273G"	1qA3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.9998012	GCC	synonymous	NA	NA	NA	NA
M3	chr1	20523881	12A2p6	cell line	sgMsh2	20523881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	177	4	0	0	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon32:c.T4007C:p.V1336A	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999956	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	20935005	12A2p6	cell line	sgMsh2	20935005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	58	55	14	0.254545455	exonic	Paqr8	nonsynonymous SNV	"Paqr8:NM_001355122:exon3:c.T382G:p.L128V,Paqr8:NM_028829:exon3:c.T382G:p.L128V"	1qA4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.62522079	2	0.8294875	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	23370041	12A2p6	cell line	sgMsh2	23370041	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	86	13	3	0.230769231	exonic	Ogfrl1	frameshift deletion	"Ogfrl1:NM_001379083:exon5:c.890delA:p.K297Rfs*82,Ogfrl1:NM_001081079:exon7:c.1103delA:p.K368Rfs*82,Ogfrl1:NM_001379082:exon7:c.1106delA:p.K369Rfs*82"	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	C	5	CCCCC	-1
M3	chr1	26683154	12A2p6	cell line	sgMsh2	26683154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	113	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.T2944C:p.C982R	1qA5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	31	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	38	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9804267	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	34182130	12A2p6	cell line	sgMsh2	34182130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	150	3	2	0.666666667	exonic	Dst	synonymous SNV	Dst:NM_010081:exon24:c.A7014G:p.E2338E	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9976093	AAC	synonymous	NA	NA	NA	NA
M3	chr1	34229207	12A2p6	cell line	sgMsh2	34229207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	41	100	26	0.26	exonic	Dst	synonymous SNV	"Dst:NM_133833:exon52:c.A9687G:p.T3229T,Dst:NM_134448:exon57:c.A15729G:p.T5243T,Dst:NM_001276764:exon60:c.A16263G:p.T5421T"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9836294	CAG	synonymous	NA	NA	NA	NA
M3	chr1	34537173	12A2p6	cell line	sgMsh2	34537173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	41	0	0	NA	exonic	Cfc1	nonsynonymous SNV	Cfc1:NM_007685:exon4:c.T313C:p.C105R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9802518	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	36104040	12A2p6	cell line	sgMsh2	36104040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	49	14	0.285714286	exonic	Hs6st1	nonsynonymous SNV	Hs6st1:NM_015818:exon2:c.A1055G:p.K352R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9475101	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	36811512	12A2p6	cell line	sgMsh2	36811512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	135	97	25	0.257731959	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon28:c.A3090G:p.E1030E	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999443	TTT	synonymous	NA	NA	NA	NA
M3	chr1	37261918	12A2p6	cell line	sgMsh2	37261918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	76	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon6:c.A1718G:p.Y573C,Cnga3:NM_001282010:exon8:c.A1832G:p.Y611C"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	37807068	12A2p6	cell line	sgMsh2	37807068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	5	0	0	exonic	Tsga10	nonsynonymous SNV	"Tsga10:NM_001290721:exon12:c.A976G:p.I326V,Tsga10:NM_001290720:exon13:c.A976G:p.I326V,Tsga10:NM_207228:exon13:c.A976G:p.I326V"	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.723714476	2	6.75E-06	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr1	39539904	12A2p6	cell line	sgMsh2	39539904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	164	79	19	0.240506329	exonic	Cnot11	synonymous SNV	Cnot11:NM_028043:exon4:c.A849G:p.P283P	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999904	CAC	synonymous	CCA	8	CCACCACC	NA
M3	chr1	39672272	12A2p6	cell line	sgMsh2	39672272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	95	0	0	NA	exonic	Rfx8	nonsynonymous SNV	Rfx8:NM_001145660:exon13:c.A1196G:p.K399R	1qB	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	44206380	12A2p6	cell line	sgMsh2	44206380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	130	0	0	NA	exonic	Mettl21e	synonymous SNV	Mettl21e:NM_207281:exon5:c.A705G:p.K235K	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9998052	CTT	synonymous	NA	NA	NA	NA
M3	chr1	44708633	12A2p6	cell line	sgMsh2	44708633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	153	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon3:c.T45C:p.H15H	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999813	ATA	synonymous	NA	NA	NA	NA
M3	chr1	44780994	12A2p6	cell line	sgMsh2	44780994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	146	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon9:c.T636G:p.P212P	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	CTT	synonymous	NA	NA	NA	NA
M3	chr1	45329099	12A2p6	cell line	sgMsh2	45329099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	73	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon13:c.G941A:p.G314E	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	GGA	nonsynonymous	NA	NA	NA	NA
M3	chr1	45341210	12A2p6	cell line	sgMsh2	45341210	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	72	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon40:c.G2893T:p.G965C	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	45402107	12A2p6	cell line	sgMsh2	45402107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	78	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon30:c.A1997G:p.Q666R	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9675011	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	46299840	12A2p6	cell line	sgMsh2	46299840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	67	5	0	0	exonic	Dnah7b	synonymous SNV	Dnah7b:NM_001368717:exon53:c.A9915G:p.L3305L	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.9965726	TAC	synonymous	NA	NA	NA	NA
M3	chr1	46455844	12A2p6	cell line	sgMsh2	46455844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	80	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon4:c.T231C:p.V77V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9618503	TTA	synonymous	A	5	AAAAA	NA
M3	chr1	46775247	12A2p6	cell line	sgMsh2	46775247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	279	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon58:c.A10858G:p.M3620V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	9.97E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	51769071	12A2p6	cell line	sgMsh2	51769071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	46	61	11	0.180327869	exonic	Myo1b	nonsynonymous SNV	"Myo1b:NM_001161817:exon22:c.A2315G:p.E772G,Myo1b:NM_001290982:exon22:c.A2315G:p.E772G,Myo1b:NM_010863:exon22:c.A2315G:p.E772G"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	52212343	12A2p6	cell line	sgMsh2	52212343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	77	178	48	0.269662921	exonic	Gls	nonsynonymous SNV	"Gls:NM_001081081:exon6:c.T854C:p.V285A,Gls:NM_001113383:exon6:c.T854C:p.V285A"	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	53567158	12A2p6	cell line	sgMsh2	53567158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	124	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3702C:p.V1234V	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	TAA	synonymous	NA	NA	NA	NA
M3	chr1	53567203	12A2p6	cell line	sgMsh2	53567203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	138	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3657C:p.D1219D	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	TAT	synonymous	NA	NA	NA	NA
M3	chr1	53761057	12A2p6	cell line	sgMsh2	53761057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	42	54	17	0.314814815	exonic	Stk17b	nonsynonymous SNV	Stk17b:NM_133810:exon7:c.A761G:p.Y254C	1qC1.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9845778	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr1	55355724	12A2p6	cell line	sgMsh2	55355724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	59	0	0	NA	exonic	Boll	synonymous SNV	"Boll:NM_001367887:exon3:c.T181C:p.L61L,Boll:NM_001368767:exon3:c.T181C:p.L61L,Boll:NM_029267:exon3:c.T181C:p.L61L"	1qC1.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9815628	AAA	synonymous	NA	NA	NA	NA
M3	chr1	56891225	12A2p6	cell line	sgMsh2	56891225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	142	2	1	0.5	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.A638C:p.N213T,Satb2:NM_001358580:exon7:c.A638C:p.N213T,Satb2:NM_001358581:exon7:c.A638C:p.N213T"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999636	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr1	58016226	12A2p6	cell line	sgMsh2	58016226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	136	33	7	0.212121212	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.T1268C:p.V423A,Sgo2a:NM_199007:exon7:c.T1568C:p.V523A"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	30	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9685855	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M3	chr1	58476438	12A2p6	cell line	sgMsh2	58476438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	210	75	14	0.186666667	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon8:c.T766C:p.L256L,Orc2:NM_001271526:exon11:c.T910C:p.L304L,Orc2:NM_008765:exon11:c.T910C:p.L304L"	1qC1.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9934529	AAC	synonymous	NA	NA	NA	NA
M3	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	91	61	15	0.245901639	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9829171	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	60978008	12A2p6	cell line	sgMsh2	60978008	T	-	Deletion	Strelka2;Vardict	2	0.3235	68	0	0	NA	exonic	Icos	frameshift deletion	Icos:NM_017480:exon1:c.50delT:p.L18fs*0	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr1	63585429	12A2p6	cell line	sgMsh2	63585429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	65	0	0	NA	exonic	Adam23	synonymous SNV	Adam23:NM_011780:exon25:c.C2415T:p.V805V	1qC2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9961324	TCC	synonymous	NA	NA	NA	NA
M3	chr1	66505052	12A2p6	cell line	sgMsh2	66505052	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	66	0	0	NA	exonic	Unc80	frameshift deletion	"Unc80:NM_001368824:exon9:c.1333delA:p.K446Sfs*38,Unc80:NM_001368825:exon9:c.1333delA:p.K446Sfs*38,Unc80:NM_175510:exon9:c.1333delA:p.K446Sfs*38"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.984936861	NA	NA	TAA	frameshift	T	5	TTTTT	-1
M3	chr1	70461128	12A2p6	cell line	sgMsh2	70461128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	128	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon6:c.T627C:p.P209P,Spag16:NM_029160:exon15:c.T1614C:p.P538P"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8611275	CTA	synonymous	NA	NA	NA	NA
M3	chr1	74191855	12A2p6	cell line	sgMsh2	74191855	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	121	0	0	NA	exonic	Cxcr1	stopgain	Cxcr1:NM_178241:exon2:c.1007delT:p.L336fs*0	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
M3	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	88	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9917379	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	74571416	12A2p6	cell line	sgMsh2	74571416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	15	6	0.4	exonic	Zfp142	synonymous SNV	"Zfp142:NM_001310668:exon7:c.G3219A:p.E1073E,Zfp142:NM_029888:exon7:c.G2910A:p.E970E"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	ACT	synonymous	NA	NA	NA	NA
M3	chr1	74594618	12A2p6	cell line	sgMsh2	74594618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	65	73	17	0.232876712	exonic	Rnf25	frameshift deletion	"Rnf25:NM_001305230:exon9:c.731delA:p.K244Rfs*30,Rnf25:NM_021313:exon9:c.734delA:p.K245Rfs*30"	1qC3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.96352519	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	182	37	5	0.135135135	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999968	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	75274470	12A2p6	cell line	sgMsh2	75274470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	120	0	0	NA	exonic	Resp18	nonsynonymous SNV	Resp18:NM_009049:exon3:c.A271G:p.S91G	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	75402461	12A2p6	cell line	sgMsh2	75402461	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	56	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001173477:exon4:c.C322A:p.L108M,Speg:NM_001085370:exon7:c.C679A:p.L227M,Speg:NM_007463:exon9:c.C2884A:p.L962M,Speg:NM_001085371:exon10:c.C2566A:p.L856M"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9933432	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	75411103	12A2p6	cell line	sgMsh2	75411103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	52	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon15:c.C1982A:p.A661D,Speg:NM_007463:exon17:c.C4187A:p.A1396D"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.9915312	GCT	nonsynonymous	TGCTG	10	TGCTGTGCTG	NA
M3	chr1	77374917	12A2p6	cell line	sgMsh2	77374917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	40	89	18	0.202247191	exonic	Epha4	synonymous SNV	Epha4:NM_007936:exon16:c.A2700G:p.T900T	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9826236	CTG	synonymous	NA	NA	NA	NA
M3	chr1	78443700	12A2p6	cell line	sgMsh2	78443700	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	109	102	25	0.245098039	exonic	Farsb	nonsynonymous SNV	"Farsb:NM_001278075:exon16:c.T1553G:p.I518S,Farsb:NM_011811:exon16:c.T1553G:p.I518S"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9996648	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	79435569	12A2p6	cell line	sgMsh2	79435569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	95	0	0	NA	exonic	Scg2	nonsynonymous SNV	"Scg2:NM_009129:exon2:c.A1436C:p.Q479P,Scg2:NM_001310680:exon3:c.A1316C:p.Q439P"	1qC4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9969682	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	82493576	12A2p6	cell line	sgMsh2	82493576	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	31	5	0	0	exonic	Col4a4	frameshift deletion	Col4a4:NM_007735:exon27:c.2057delC:p.P686Qfs*5	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr1	84159243	12A2p6	cell line	sgMsh2	84159243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	82	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon2:c.A166G:p.S56G	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9968767	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	85248322	12A2p6	cell line	sgMsh2	85248322	T	-	Deletion	Strelka2;Vardict	2	0.1311	244	0	0	NA	exonic	C130026I21Rik	frameshift deletion	"C130026I21Rik:NM_001037909:exon6:c.569delA:p.K190Sfs*6,C130026I21Rik:NM_175219:exon7:c.653delA:p.K218Sfs*6"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.561414011	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr1	85550229	12A2p6	cell line	sgMsh2	85550229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	210	0	0	NA	exonic	Gm7592	synonymous SNV	Gm7592:NM_001378663:exon2:c.A543G:p.R181R	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9999417	GAG	synonymous	NA	NA	NA	NA
M3	chr1	85550474	12A2p6	cell line	sgMsh2	85550474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	119	0	0	NA	exonic	Gm7592	nonsynonymous SNV	Gm7592:NM_001378663:exon2:c.C788A:p.A263D	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8773055	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Strelka2;Vardict	2	0.0894	123	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.382840676	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr1	86075859	12A2p6	cell line	sgMsh2	86075859	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	150	302	2	0.006622517	exonic	Psmd1	frameshift deletion	Psmd1:NM_027357:exon5:c.365delA:p.K124Sfs*10	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr1	86110599	12A2p6	cell line	sgMsh2	86110599	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	181	0	0	NA	exonic	Htr2b	stopgain	Htr2b:NM_008311:exon2:c.T284A:p.L95X	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999966	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr1	87194891	12A2p6	cell line	sgMsh2	87194891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	94	0	0	NA	exonic	Chrnd	synonymous SNV	Chrnd:NM_021600:exon7:c.C720A:p.T240T	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	CCT	synonymous	NA	NA	NA	NA
M3	chr1	87407650	12A2p6	cell line	sgMsh2	87407650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	115	25	5	0.2	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon12:c.A1194G:p.E398E,Gigyf2:NM_146112:exon12:c.A1212G:p.E404E"	1qC5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9994952	AAC	synonymous	NA	NA	NA	NA
M3	chr1	87982016	12A2p6	cell line	sgMsh2	87982016	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	114	31	11	0.35483871	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon13:c.T1715A:p.I572K,Usp40:NM_001198573:exon13:c.T1715A:p.I572K"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9737377	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	88228246	12A2p6	cell line	sgMsh2	88228246	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	694	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C99A:p.T33T	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.226963711	3	1	CCA	synonymous	NA	NA	NA	NA
M3	chr1	88249779	12A2p6	cell line	sgMsh2	88249779	C	-	Deletion	Mutect2;Vardict	2	0.064	271	0	0	NA	exonic	Mroh2a	frameshift deletion	Mroh2a:NM_001281466:exon28:c.3023delC:p.R1009Afs*11	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.274069387	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3	chr1	88265701	12A2p6	cell line	sgMsh2	88265701	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	452	137	0	0	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon5:c.G1256T:p.R419M,Hjurp:NM_198652:exon8:c.G1484T:p.R495M"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.28691639	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	91319076	12A2p6	cell line	sgMsh2	91319076	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	89	29	5	0.172413793	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon11:c.A1108T:p.S370C	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.999095	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	91370451	12A2p6	cell line	sgMsh2	91370451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	120	2	1	0.5	exonic	Erfe	synonymous SNV	Erfe:NM_173395:exon5:c.T682C:p.L228L	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	CTT	synonymous	NA	NA	NA	NA
M3	chr1	92573497	12A2p6	cell line	sgMsh2	92573497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	174	0	0	NA	exonic	Olfr1413	nonsynonymous SNV	Olfr1413:NM_147037:exon1:c.T325C:p.F109L	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9999926	CTT	nonsynonymous	TTC	8	TTCTTCTT	NA
M3	chr1	92588592	12A2p6	cell line	sgMsh2	92588592	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	200	0	0	NA	exonic	Olfr1412	nonsynonymous SNV	Olfr1412:NM_146277:exon1:c.A261C:p.K87N	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	93159815	12A2p6	cell line	sgMsh2	93159815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	33	28	6	0.214285714	exonic	Mab21l4	synonymous SNV	"Mab21l4:NM_001159940:exon2:c.T315C:p.T105T,Mab21l4:NM_172411:exon2:c.T315C:p.T105T"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9719203	CAG	synonymous	NA	NA	NA	NA
M3	chr1	93282827	12A2p6	cell line	sgMsh2	93282827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	32	2	0	0	exonic	Sned1	nonsynonymous SNV	Sned1:NM_172463:exon21:c.G2849A:p.G950E	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.9720747	GGA	nonsynonymous	GGAT	8	GGATGGAT	NA
M3	chr1	93335703	12A2p6	cell line	sgMsh2	93335703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	100	3	1	0.333333333	exonic	Pask	synonymous SNV	Pask:NM_080850:exon3:c.T330C:p.R110R	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9992598	CAC	synonymous	NA	NA	NA	NA
M3	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	127	1	0.007874016	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999697	AAG	synonymous	NA	NA	NA	NA
M3	chr1	93408178	12A2p6	cell line	sgMsh2	93408178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	48	562	131	0.233096085	exonic	Hdlbp	stopgain	"Hdlbp:NM_001301364:exon28:c.C3802T:p.R1268X,Hdlbp:NM_001357556:exon28:c.C3802T:p.R1268X,Hdlbp:NM_133808:exon28:c.C3802T:p.R1268X"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr1	93686595	12A2p6	cell line	sgMsh2	93686595	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	39	17	3	0.176470588	exonic	Bok	stopgain	Bok:NM_016778:exon2:c.G149A:p.W50X	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9815572	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	93792853	12A2p6	cell line	sgMsh2	93792853	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	94	114	25	0.219298246	exonic	Dtymk	nonsynonymous SNV	Dtymk:NM_001105667:exon5:c.C619A:p.L207M	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9924602	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr1	95667162	12A2p6	cell line	sgMsh2	95667162	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	137	1	0	0	exonic	St8sia4	nonsynonymous SNV	"St8sia4:NM_001159745:exon1:c.A100T:p.T34S,St8sia4:NM_009183:exon1:c.A100T:p.T34S"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9876315	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	35	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr1	97777326	12A2p6	cell line	sgMsh2	97777326	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	58	4	0	0	exonic	Gin1	frameshift deletion	"Gin1:NM_001310773:exon3:c.140delA:p.K49Sfs*14,Gin1:NM_026250:exon3:c.140delA:p.K49Sfs*14"	1qD	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.775102486	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr1	105554086	12A2p6	cell line	sgMsh2	105554086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	157	62	21	0.338709677	exonic	Pign	nonsynonymous SNV	Pign:NM_013784:exon27:c.T2480C:p.M827T	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.5004996	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	106004165	12A2p6	cell line	sgMsh2	106004165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	103	34	7	0.205882353	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon3:c.T1096C:p.Y366H,Zcchc2:NM_001122676:exon3:c.T1096C:p.Y366H"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	107000780	12A2p6	cell line	sgMsh2	107000780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	110	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon8:c.T1129C:p.S377P	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	107159045	12A2p6	cell line	sgMsh2	107159045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	97	0	0	NA	exonic	Serpinb3b	synonymous SNV	Serpinb3b:NM_198680:exon3:c.A195G:p.T65T	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9726462	TTG	synonymous	NA	NA	NA	NA
M3	chr1	107602840	12A2p6	cell line	sgMsh2	107602840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	154	12	3	0.25	exonic	Serpinb8	nonsynonymous SNV	"Serpinb8:NM_001159748:exon4:c.T347C:p.L116P,Serpinb8:NM_011459:exon4:c.T347C:p.L116P"	1qE2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999824	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	115685184	12A2p6	cell line	sgMsh2	115685184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	323	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon1:c.A48G:p.S16S,Cntnap5a:NM_001371013:exon1:c.A48G:p.S16S"	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	1.62E-09	CAG	synonymous	NA	NA	NA	NA
M3	chr1	119691821	12A2p6	cell line	sgMsh2	119691821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	133	22	3	0.136363636	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon17:c.T1524C:p.G508G	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999372	CAC	synonymous	NA	NA	NA	NA
M3	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	80	44	16	0.363636364	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9984391	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.247	175	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999951	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	53	11	0.20754717	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr1	128193486	12A2p6	cell line	sgMsh2	128193486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	64	53	17	0.320754717	exonic	R3hdm1	synonymous SNV	"R3hdm1:NM_001357482:exon18:c.T1755C:p.H585H,R3hdm1:NM_181750:exon18:c.T1755C:p.H585H"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	ATA	synonymous	NA	NA	NA	NA
M3	chr1	128236639	12A2p6	cell line	sgMsh2	128236639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	165	47	14	0.29787234	exonic	R3hdm1	nonsynonymous SNV	"R3hdm1:NM_001357482:exon27:c.T3289C:p.S1097P,R3hdm1:NM_181750:exon27:c.T3289C:p.S1097P"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.616656122	2	0.9996382	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	128291951	12A2p6	cell line	sgMsh2	128291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	135	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon13:c.A4960G:p.S1654G	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9998215	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	128300744	12A2p6	cell line	sgMsh2	128300744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	125	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A3011G:p.N1004S	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998979	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	128304111	12A2p6	cell line	sgMsh2	128304111	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	40	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon7:c.A2000T:p.E667V	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9826236	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	128348373	12A2p6	cell line	sgMsh2	128348373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	65	223	48	0.215246637	exonic	Mcm6	nonsynonymous SNV	"Mcm6:NM_001313695:exon7:c.A1074G:p.I358M,Mcm6:NM_008567:exon7:c.A1074G:p.I358M"	1qE3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.766537818	1	0.702193	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	130655982	12A2p6	cell line	sgMsh2	130655982	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	83	5	0	0	exonic	C4bp	nonsynonymous SNV	C4bp:NM_007576:exon3:c.C248T:p.T83I	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986984	GGT	nonsynonymous	NA	NA	NA	NA
M3	chr1	130813146	12A2p6	cell line	sgMsh2	130813146	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.248	114	0	0	NA	exonic	Fcamr	nonsynonymous SNV	"Fcamr:NM_001170632:exon5:c.T1301G:p.M434R,Fcamr:NM_144960:exon5:c.T1133G:p.M378R"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	39	9	0.230769231	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9475101	GGC	synonymous	NA	NA	NA	NA
M3	chr1	133004687	12A2p6	cell line	sgMsh2	133004687	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	125	42	12	0.285714286	exonic	Mdm4	synonymous SNV	"Mdm4:NM_001302801:exon6:c.C381T:p.H127H,Mdm4:NM_001302802:exon6:c.C381T:p.H127H,Mdm4:NM_001302803:exon6:c.C378T:p.H126H,Mdm4:NM_008575:exon7:c.C378T:p.H126H"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9866529	TGT	synonymous	NA	NA	NA	NA
M3	chr1	133266621	12A2p6	cell line	sgMsh2	133266621	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	85	63	13	0.206349206	exonic	Plekha6	synonymous SNV	"Plekha6:NM_001160268:exon6:c.G336A:p.A112A,Plekha6:NM_182930:exon6:c.G336A:p.A112A"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9988469	CGG	synonymous	NA	NA	NA	NA
M3	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	18	13	2	0.153846154	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9168223	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr1	134746867	12A2p6	cell line	sgMsh2	134746867	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	106	0	0	NA	exonic	Syt2	nonsynonymous SNV	"Syt2:NM_001355726:exon8:c.A1042C:p.I348L,Syt2:NM_009307:exon9:c.A1042C:p.I348L"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9993912	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	134879721	12A2p6	cell line	sgMsh2	134879721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	122	5	1	0.2	exonic	Ppp1r12b	nonsynonymous SNV	"Ppp1r12b:NM_001368829:exon8:c.A662G:p.N221S,Ppp1r12b:NM_001081307:exon9:c.A1166G:p.N389S,Ppp1r12b:NM_001368827:exon9:c.A1166G:p.N389S"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9975661	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	134999360	12A2p6	cell line	sgMsh2	134999360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	68	18	1	0.055555556	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon12:c.A1090G:p.I364V	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9201405	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr1	135301934	12A2p6	cell line	sgMsh2	135301934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	138	203	55	0.270935961	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon6:c.A434G:p.Y145C,Timm17a:NM_001360858:exon6:c.A263G:p.Y88C,Timm17a:NM_011590:exon6:c.A500G:p.Y167C"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.715149808	2	0.8984005	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	136070638	12A2p6	cell line	sgMsh2	136070639	TT	AA	DBS	Mutect2;Vardict	2	0.212	51	0	0	NA	exonic	Cacna1s	nonframeshift substitution	"Cacna1s:NM_001081023:exon4:c.403_404AA:p.F135N,Cacna1s:NM_014193:exon4:c.403_404AA:p.F135N"	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.907854846	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	138498589	12A2p6	cell line	sgMsh2	138498589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	99	233	58	0.248927039	exonic	Nek7	nonsynonymous SNV	Nek7:NM_021605:exon9:c.A785C:p.H262P	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	139432013	12A2p6	cell line	sgMsh2	139432013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	144	62	10	0.161290323	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon5:c.T1480C:p.Y494H	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999678	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	139456816	12A2p6	cell line	sgMsh2	139456816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	116	14	2	0.142857143	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon2:c.T350C:p.L117P	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	139479633	12A2p6	cell line	sgMsh2	139479633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	22	10	0.454545455	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T6257C:p.M2086T	1qE4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	ATG	nonsynonymous	CACATG	12	CACATGCACATG	NA
M3	chr1	139507581	12A2p6	cell line	sgMsh2	139507581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	162	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon4:c.T463C:p.L155L	1qF	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9968084	TTT	synonymous	NA	NA	NA	NA
M3	chr1	139810826	12A2p6	cell line	sgMsh2	139810826	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	123	0	0	NA	exonic	Cfhr2	synonymous SNV	Cfhr2:NM_001025575:exon6:c.A996G:p.V332V	1qF	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8949277	ATA	synonymous	NA	NA	NA	NA
M3	chr1	140596025	12A2p6	cell line	sgMsh2	140596025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	223	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon27:c.T3262C:p.S1088P	1qF	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.770820152	2	0.6623321	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	144139554	12A2p6	cell line	sgMsh2	144139554	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	191	0	0	NA	exonic	Rgs13	nonsynonymous SNV	Rgs13:NM_153171:exon6:c.A424C:p.K142Q	1qF	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999981	TTT	nonsynonymous	A	5	AAAAA	NA
M3	chr1	150723469	12A2p6	cell line	sgMsh2	150723469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	105	0	0	NA	exonic	Hmcn1	synonymous SNV	Hmcn1:NM_001024720:exon31:c.A4695G:p.K1565K	1qG1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	GTT	synonymous	NA	NA	NA	NA
M3	chr1	152371857	12A2p6	cell line	sgMsh2	152371857	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	113	28	6	0.214285714	exonic	Tsen15	nonsynonymous SNV	Tsen15:NM_025677:exon4:c.G383A:p.G128D	1qG2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr1	152844296	12A2p6	cell line	sgMsh2	152844296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	101	84	26	0.30952381	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon17:c.A2473G:p.I825V,Smg7:NM_001160256:exon17:c.A2335G:p.I779V,Smg7:NM_001160257:exon18:c.A2359G:p.I787V,Smg7:NM_001359257:exon18:c.A1330G:p.I444V"	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr1	153458482	12A2p6	cell line	sgMsh2	153458482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	87	359	77	0.21448468	exonic	Dhx9	synonymous SNV	Dhx9:NM_007842:exon25:c.A2928G:p.L976L	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	ATA	synonymous	NA	NA	NA	NA
M3	chr1	153760821	12A2p6	cell line	sgMsh2	153760821	-	A	Insertion	Strelka2;Vardict	2	0.14	50	33	0	0	exonic	Rnasel	frameshift insertion	Rnasel:NM_011882:exon8:c.1947dupA:p.N652Kfs*8	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.599526785	NA	NA	AGA	frameshift	A	9	AAAAAAAAA	1
M3	chr1	153850771	12A2p6	cell line	sgMsh2	153850771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	154	0	0	NA	exonic	Teddm2	nonsynonymous SNV	Teddm2:NM_178243:exon1:c.A356G:p.N119S	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999824	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	153892064	12A2p6	cell line	sgMsh2	153892064	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	156	0	0	NA	exonic	Teddm1a	nonsynonymous SNV	Teddm1a:NM_178244:exon1:c.T273A:p.F91L	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999827	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	156635122	12A2p6	cell line	sgMsh2	156635122	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	145	58	5	0.086206897	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.T1466A:p.I489N,Abl2:NM_009595:exon9:c.T1466A:p.I489N"	1qG3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999697	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr1	158266514	12A2p6	cell line	sgMsh2	158266514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	42	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon4:c.A617C:p.E206A	1qH1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.732279145	1	0.6632125	CTC	nonsynonymous	CT	8	CTCTCTCT	NA
M3	chr1	162677426	12A2p6	cell line	sgMsh2	162677426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	81	71	11	0.154929577	exonic	Prrc2c	synonymous SNV	Prrc2c:NM_001081290:exon32:c.T7851C:p.S2617S	1qH2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	CAC	synonymous	NA	NA	NA	NA
M3	chr1	162954403	12A2p6	cell line	sgMsh2	162954403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	81	0	0	NA	exonic	Fmo3	synonymous SNV	Fmo3:NM_008030:exon9:c.A1380G:p.E460E	1qH2.1	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	CTT	synonymous	NA	NA	NA	NA
M3	chr1	164161866	12A2p6	cell line	sgMsh2	164161866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	159	23	1	0.043478261	exonic	F5	synonymous SNV	F5:NM_007976:exon3:c.T336C:p.H112H	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.999987	ATC	synonymous	CATC	9	CATCCATCC	NA
M3	chr1	164194057	12A2p6	cell line	sgMsh2	164194057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	172	23	9	0.391304348	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon13:c.A4100G:p.Q1367R	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999941	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	164257135	12A2p6	cell line	sgMsh2	164257135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	14	1	0.071428571	exonic	Slc19a2	nonsynonymous SNV	"Slc19a2:NM_001276455:exon2:c.T593C:p.V198A,Slc19a2:NM_054087:exon2:c.T593C:p.V198A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9998073	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	164257255	12A2p6	cell line	sgMsh2	164257255	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	131	10	4	0.4	exonic	Slc19a2	nonsynonymous SNV	Slc19a2:NM_054087:exon2:c.T713G:p.V238G	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999291	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	164298328	12A2p6	cell line	sgMsh2	164298328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	128	34	5	0.147058824	exonic	Blzf1	synonymous SNV	"Blzf1:NM_001160209:exon5:c.A717G:p.L239L,Blzf1:NM_001160208:exon6:c.A717G:p.L239L,Blzf1:NM_001357052:exon6:c.A636G:p.L212L,Blzf1:NM_025505:exon7:c.A738G:p.L246L"	1qH2.2	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.75797315	2	0.5522332	GTA	synonymous	NA	NA	NA	NA
M3	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	122	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998776	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	168183539	12A2p6	cell line	sgMsh2	168183539	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	97	293	78	0.266211604	exonic	Pbx1	nonsynonymous SNV	"Pbx1:NM_001291509:exon6:c.G918T:p.Q306H,Pbx1:NM_183355:exon8:c.G1191T:p.Q397H"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	169655604	12A2p6	cell line	sgMsh2	169655604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	85	0	0	NA	exonic	Rgs5	synonymous SNV	"Rgs5:NM_001313705:exon1:c.G27A:p.P9P,Rgs5:NM_009063:exon1:c.G27A:p.P9P"	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9988469	CGC	synonymous	NA	NA	NA	NA
M3	chr1	169744490	12A2p6	cell line	sgMsh2	169744490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	97	0	0	NA	exonic	Rgs4	nonsynonymous SNV	Rgs4:NM_009062:exon4:c.T239C:p.L80P	1qH2.3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	146	52	7	0.134615385	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr1	171286521	12A2p6	cell line	sgMsh2	171286521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	59	37	11	0.297297297	exonic	Usp21	synonymous SNV	Usp21:NM_013919:exon2:c.A429G:p.A143A	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.723714476	1	9.92E-05	GTG	synonymous	NA	NA	NA	NA
M3	chr1	171460557	12A2p6	cell line	sgMsh2	171460557	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	114	378	79	0.208994709	exonic	F11r	synonymous SNV	F11r:NM_172647:exon3:c.C150A:p.T50T	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.60879	CCT	synonymous	NA	NA	NA	NA
M3	chr1	171682100	12A2p6	cell line	sgMsh2	171682100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	118	0	0	NA	exonic	Cd48	nonsynonymous SNV	"Cd48:NM_001360767:exon1:c.T7G:p.F3V,Cd48:NM_007649:exon1:c.T7G:p.F3V"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	172246733	12A2p6	cell line	sgMsh2	172246733	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	122	0	0	NA	exonic	Atp1a4	frameshift deletion	Atp1a4:NM_013734:exon8:c.952delT:p.W318Gfs*36	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr1	172319308	12A2p6	cell line	sgMsh2	172319308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	70	93	18	0.193548387	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon6:c.T1736C:p.F579S	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.603809119	2	0.935982	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	173203796	12A2p6	cell line	sgMsh2	173203796	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.227	165	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.T439C:p.S147P	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9999625	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr1	173203798	12A2p6	cell line	sgMsh2	173203798	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.224	167	0	0	NA	exonic	Olfr218	synonymous SNV	Olfr218:NM_001001809:exon1:c.T441C:p.S147S	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9999344	CTG	synonymous	NA	NA	NA	NA
M3	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Strelka2;Vardict	2	0.1808	271	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.774246019	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr1	173332911	12A2p6	cell line	sgMsh2	173332911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	118	0	0	NA	exonic	Ackr1	nonsynonymous SNV	Ackr1:NM_010045:exon2:c.G40T:p.D14Y	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	173595209	12A2p6	cell line	sgMsh2	173595209	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	exonic	Ifi213	nonsynonymous SNV	"Ifi213:NM_001177350:exon2:c.A89T:p.K30M,Ifi213:NM_001368798:exon2:c.A89T:p.K30M,Ifi213:NM_001368799:exon2:c.A89T:p.K30M,Ifi213:NM_001177349:exon3:c.A89T:p.K30M"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.706585139	2	0.9510422	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	173677774	12A2p6	cell line	sgMsh2	173677774	A	T	SNV	Mutect2;MuSe;Vardict	3	0.085	258	0	0	NA	exonic	Ifi208	nonsynonymous SNV	"Ifi208:NM_001162938:exon2:c.A89T:p.K30M,Ifi208:NM_001379481:exon2:c.A89T:p.K30M"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.363998405	3	0.9999913	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr1	173937892	12A2p6	cell line	sgMsh2	173937892	T	-	Deletion	Strelka2;Vardict	2	0.1062	113	37	0	0	exonic	Ifi203	frameshift deletion	"Ifi203:NM_001302649:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302650:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302651:exon3:c.115delA:p.M39Cfs*23"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.45478389	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr1	174041991	12A2p6	cell line	sgMsh2	174041991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	154	0	0	NA	exonic	Olfr433	nonsynonymous SNV	Olfr433:NM_146717:exon1:c.C40T:p.L14F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999824	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	174137279	12A2p6	cell line	sgMsh2	174137279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	236	0	0	NA	exonic	Olfr424	synonymous SNV	Olfr424:NM_146721:exon1:c.C534T:p.F178F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9968502	TCT	synonymous	NA	NA	NA	NA
M3	chr1	174158781	12A2p6	cell line	sgMsh2	174158781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	138	0	0	NA	exonic	Olfr420	nonsynonymous SNV	Olfr420:NM_146305:exon1:c.T7C:p.F3L	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	174224500	12A2p6	cell line	sgMsh2	174224500	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	90	0	0	NA	exonic	Spta1	frameshift deletion	Spta1:NM_011465:exon39:c.5499delG:p.E1835Rfs*21	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr1	174250193	12A2p6	cell line	sgMsh2	174250193	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	105	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.C733T:p.L245F	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	174250687	12A2p6	cell line	sgMsh2	174250687	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	123	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.G239T:p.R80M	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr1	174448814	12A2p6	cell line	sgMsh2	174448814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	161	0	0	NA	exonic	Olfr220	nonsynonymous SNV	Olfr220:NM_207694:exon1:c.A190G:p.M64V	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9978604	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	174699594	12A2p6	cell line	sgMsh2	174699594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	92	0	0	NA	exonic	Fmn2	synonymous SNV	Fmn2:NM_019445:exon13:c.A4251G:p.E1417E	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	AAC	synonymous	NA	NA	NA	NA
M3	chr1	175153188	12A2p6	cell line	sgMsh2	175153188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	155	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon5:c.A269G:p.Y90C,Rgs7:NM_001347195:exon5:c.A269G:p.Y90C,Rgs7:NM_011880:exon5:c.A269G:p.Y90C"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	175270894	12A2p6	cell line	sgMsh2	175270894	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	123	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon3:c.G98A:p.R33H,Rgs7:NM_001347195:exon3:c.G98A:p.R33H,Rgs7:NM_001357129:exon3:c.G98A:p.R33H,Rgs7:NM_011880:exon3:c.G98A:p.R33H"	1qH3	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	29	4	0.137931034	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	ATA	synonymous	NA	NA	NA	NA
M3	chr1	177050128	12A2p6	cell line	sgMsh2	177050128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	107	180	59	0.327777778	exonic	Akt3	nonsynonymous SNV	Akt3:NM_011785:exon10:c.T1073C:p.I358T	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.999696	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	178915747	12A2p6	cell line	sgMsh2	178915747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	104	0	0	NA	exonic	Kif26b	frameshift deletion	Kif26b:NM_001161665:exon12:c.3407delT:p.L1137fs*0	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	82	122	32	0.262295082	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.2447	94	67	5	0.074626866	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M3	chr1	181101591	12A2p6	cell line	sgMsh2	181101591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	65	74	18	0.243243243	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon19:c.A2224C:p.T742P	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9961324	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	181181474	12A2p6	cell line	sgMsh2	181181474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	80	467	96	0.205567452	exonic	Wdr26	nonsynonymous SNV	Wdr26:NM_145514:exon13:c.T1730C:p.I577T	1qH4	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9984391	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	182341335	12A2p6	cell line	sgMsh2	182341335	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	33	74	3	0.040540541	exonic	Fbxo28	nonsynonymous SNV	Fbxo28:NM_175127:exon1:c.C255A:p.S85R	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.973675	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr1	185258555	12A2p6	cell line	sgMsh2	185258555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	116	77	17	0.220779221	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon19:c.T1925C:p.L642P	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
M3	chr1	185323752	12A2p6	cell line	sgMsh2	185323752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	94	115	31	0.269565217	exonic	Iars2	nonsynonymous SNV	Iars2:NM_198653:exon4:c.T614C:p.M205T	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr1	185356503	12A2p6	cell line	sgMsh2	185356503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	193	188	50	0.265957447	exonic	Bpnt1	nonsynonymous SNV	"Bpnt1:NM_001347212:exon8:c.T639A:p.N213K,Bpnt1:NM_011794:exon9:c.T804A:p.N268K,Bpnt1:NM_001347210:exon10:c.T849A:p.N283K"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.595244451	2	0.9999701	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr1	185428030	12A2p6	cell line	sgMsh2	185428030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	129	237	57	0.240506329	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon32:c.G4422A:p.M1474I,Eprs:NM_001357474:exon33:c.G4443A:p.M1481I"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	TGG	nonsynonymous	TCCA	9	TCCATCCAT	NA
M3	chr1	185464395	12A2p6	cell line	sgMsh2	185464395	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	0	0	NA	exonic	Slc30a10	nonsynonymous SNV	Slc30a10:NM_001033286:exon4:c.A1253C:p.N418T	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9988527	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	187192998	12A2p6	cell line	sgMsh2	187192998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	188	0	0	NA	exonic	Spata17	nonsynonymous SNV	"Spata17:NM_028848:exon3:c.A229G:p.I77V,Spata17:NM_029067:exon3:c.A229G:p.I77V"	1qH5	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999978	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr1	188443396	12A2p6	cell line	sgMsh2	188443396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	87	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon16:c.T3690C:p.P1230P	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9733868	CTA	synonymous	NA	NA	NA	NA
M3	chr1	188784788	12A2p6	cell line	sgMsh2	188784788	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	97	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon48:c.T9694A:p.Y3232N	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9940171	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	189339813	12A2p6	cell line	sgMsh2	189339813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	84	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon2:c.A329G:p.N110S,Kcnk2:NM_001281847:exon2:c.A293G:p.N98S,Kcnk2:NM_010607:exon2:c.A284G:p.N95S"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.9400242	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	189850865	12A2p6	cell line	sgMsh2	189850865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	35	45	15	0.333333333	exonic	Ptpn14	synonymous SNV	Ptpn14:NM_008976:exon13:c.C1908T:p.G636G	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	2	1	1	0.976612	GCG	synonymous	GGC	11	GGCGGCGGCGG	NA
M3	chr1	190161612	12A2p6	cell line	sgMsh2	190161612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	84	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon2:c.A635G:p.K212R,Prox1:NM_008937:exon2:c.A635G:p.K212R"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr1	192128022	12A2p6	cell line	sgMsh2	192128022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	112	32	6	0.1875	exonic	Rcor3	nonsynonymous SNV	"Rcor3:NM_001290278:exon4:c.A302G:p.E101G,Rcor3:NM_001290279:exon4:c.A302G:p.E101G,Rcor3:NM_001290280:exon4:c.A302G:p.E101G,Rcor3:NM_001346740:exon4:c.A302G:p.E101G,Rcor3:NM_144814:exon4:c.A302G:p.E101G"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.659479463	2	0.9675019	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	115	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998129	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr1	192847134	12A2p6	cell line	sgMsh2	192847134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	81	13	2	0.153846154	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.T373C:p.Y125H,Sertad4:NM_198247:exon4:c.T373C:p.Y125H"	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr1	194644882	12A2p6	cell line	sgMsh2	194644882	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.209	48	4	1	0.25	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon2:c.T1123C:p.Y375H	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9508077	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr1	194751529	12A2p6	cell line	sgMsh2	194751529	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	66	7	1	0.142857143	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon7:c.G1885T:p.D629Y	1qH6	chr1-3216742-195166209	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr10	4357533	12A2p6	cell line	sgMsh2	4357533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	117	14	6	0.428571429	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.C4657A:p.L1553M	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998342	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr10	5228100	12A2p6	cell line	sgMsh2	5228100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	59	2	2	1	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.A14394C:p.K4798N,Syne1:NM_001347732:exon77:c.A14373C:p.K4791N"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9944444	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	5229517	12A2p6	cell line	sgMsh2	5229517	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	55	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.T12977G:p.L4326R,Syne1:NM_001347732:exon77:c.T12956G:p.L4319R"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9929299	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	5259244	12A2p6	cell line	sgMsh2	5259244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	61	2	2	1	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon63:c.G10279A:p.A3427T,Syne1:NM_001347732:exon63:c.G10258A:p.A3420T"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9950758	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr10	6890487	12A2p6	cell line	sgMsh2	6890487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	36	0	0	NA	exonic	Ipcef1	synonymous SNV	"Ipcef1:NM_001170800:exon9:c.A1209G:p.E403E,Ipcef1:NM_001347225:exon9:c.A1221G:p.E407E"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9779581	TTT	synonymous	NA	NA	NA	NA
M3	chr10	11290372	12A2p6	cell line	sgMsh2	11290372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	146	41	14	0.341463415	exonic	Fbxo30	synonymous SNV	"Fbxo30:NM_001168297:exon2:c.T837C:p.S279S,Fbxo30:NM_027968:exon2:c.T837C:p.S279S"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999714	GTT	synonymous	NA	NA	NA	NA
M3	chr10	11290755	12A2p6	cell line	sgMsh2	11290755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	121	60	14	0.233333333	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.T1220C:p.V407A,Fbxo30:NM_027968:exon2:c.T1220C:p.V407A"	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998699	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	12413993	12A2p6	cell line	sgMsh2	12413993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	61	59	27	0.457627119	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon68:c.A9602G:p.Q3201R	10qA1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9950758	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr10	17915302	12A2p6	cell line	sgMsh2	17915302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	89	32	11	0.34375	exonic	Heca	synonymous SNV	Heca:NM_001033432:exon2:c.A1005G:p.A335A	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.999095	CTG	synonymous	NA	NA	NA	NA
M3	chr10	18523873	12A2p6	cell line	sgMsh2	18523873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	98	16	5	0.3125	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.T756C:p.D252D,Nhsl1:NM_001163592:exon6:c.T744C:p.D248D"	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994755	ATA	synonymous	NA	NA	NA	NA
M3	chr10	19849139	12A2p6	cell line	sgMsh2	19849139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	31	0	0	NA	exonic	Slc35d3	stopgain	Slc35d3:NM_029529:exon2:c.C970T:p.Q324X	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9703799	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr10	19849510	12A2p6	cell line	sgMsh2	19849510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	59	0	0	NA	exonic	Slc35d3	nonsynonymous SNV	Slc35d3:NM_029529:exon2:c.T599C:p.L200P	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	2	1	1	0.9944444	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	39	3	1	0.333333333	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9815572	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	22664583	12A2p6	cell line	sgMsh2	22664583	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	108	0	0	NA	exonic	Slc2a12	synonymous SNV	Slc2a12:NM_178934:exon2:c.C336T:p.L112L	10qA3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9997139	TCG	synonymous	NA	NA	NA	NA
M3	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	153	38	0.248366013	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9871102	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr10	24660255	12A2p6	cell line	sgMsh2	24660255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	145	117	39	0.333333333	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon13:c.T1246C:p.Y416H,Enpp1:NM_001308329:exon13:c.T190C:p.Y64H,Enpp1:NM_008813:exon13:c.T1246C:p.Y416H"	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999697	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.316	88	1	1	1	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9990385	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	64	194	56	0.288659794	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9958915	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	27235785	12A2p6	cell line	sgMsh2	27235785	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	45	0	0	NA	exonic	Lama2	frameshift deletion	Lama2:NM_008481:exon16:c.2238delT:p.F746Lfs*24	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr10	28782135	12A2p6	cell line	sgMsh2	28782135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	72	0	0	NA	exonic	Themis	nonsynonymous SNV	"Themis:NM_001374699:exon4:c.T1157C:p.V386A,Themis:NM_178666:exon4:c.T1157C:p.V386A,Themis:NM_001305663:exon5:c.T890C:p.V297A"	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9974668	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	28981546	12A2p6	cell line	sgMsh2	28981546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	86	0	0	NA	exonic	2310057J18Rik	nonsynonymous SNV	2310057J18Rik:NM_026336:exon4:c.A614G:p.N205S	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9989147	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	29150332	12A2p6	cell line	sgMsh2	29150332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	96	26	2	0.076923077	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon4:c.T1409C:p.L470P	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994079	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr10	31320314	12A2p6	cell line	sgMsh2	31320314	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	108	85	34	0.4	exonic	Hddc2	nonsynonymous SNV	Hddc2:NM_027168:exon4:c.A341C:p.K114T	10qA4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9997139	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
M3	chr10	33929917	12A2p6	cell line	sgMsh2	33929917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	64	28	11	0.392857143	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon8:c.C1217A:p.P406H,Zup1:NM_001359456:exon8:c.C1217A:p.P406H,Zup1:NM_028287:exon8:c.C1217A:p.P406H"	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9958915	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr10	34044091	12A2p6	cell line	sgMsh2	34044091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	84	0	0	NA	exonic	Calhm4	nonsynonymous SNV	Calhm4:NM_001081165:exon1:c.C179T:p.A60V	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9987749	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr10	34313632	12A2p6	cell line	sgMsh2	34313632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	62	31	14	0.451612903	exonic	Nt5dc1	nonsynonymous SNV	"Nt5dc1:NM_001347463:exon9:c.A386G:p.K129R,Nt5dc1:NM_176968:exon10:c.A1061G:p.K354R"	10qB1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	27	13	4	0.307692308	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9625481	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr10	42197496	12A2p6	cell line	sgMsh2	42197496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	37	21	6	0.285714286	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon3:c.C1024T:p.L342L,Foxo3:NM_019740:exon3:c.C1024T:p.L342L"	10qB2	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9792282	AGG	synonymous	NA	NA	NA	NA
M3	chr10	45125980	12A2p6	cell line	sgMsh2	45125980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	147	150	48	0.32	exonic	Prep	synonymous SNV	Prep:NM_011156:exon10:c.C1230T:p.C410C	10qB2	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999731	GCG	synonymous	NA	NA	NA	NA
M3	chr10	45153135	12A2p6	cell line	sgMsh2	45153135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	129	27	0.209302326	exonic	Prep	nonsynonymous SNV	Prep:NM_011156:exon13:c.T1630C:p.S544P	10qB2	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9973089	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	103	34	8	0.235294118	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996126	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr10	53343900	12A2p6	cell line	sgMsh2	53343900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	81	0	0	NA	exonic	Pln	nonsynonymous SNV	"Pln:NM_023129:exon2:c.A37G:p.R13G,Pln:NM_001141927:exon3:c.A37G:p.R13G"	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9985308	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	53349103	12A2p6	cell line	sgMsh2	53349103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	77	0	0	NA	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon3:c.T389C:p.M130T	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9981282	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr10	53699057	12A2p6	cell line	sgMsh2	53699057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	70	0	0	NA	exonic	Fam184a	nonsynonymous SNV	Fam184a:NM_001081428:exon2:c.A455G:p.Q152R	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9971411	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr10	56049781	12A2p6	cell line	sgMsh2	56049781	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.377	153	9	0	0	exonic	Tbc1d32	frameshift deletion	Tbc1d32:NM_001033385:exon29:c.3267delA:p.P1090Rfs*24	10qB3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
M3	chr10	58457650	12A2p6	cell line	sgMsh2	58457650	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	96	144	46	0.319444444	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon7:c.G841T:p.A281S	10qB4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994079	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr10	59448817	12A2p6	cell line	sgMsh2	59448817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	78	157	37	0.23566879	exonic	Mcu	synonymous SNV	Mcu:NM_001033259:exon8:c.A1017G:p.V339V	10qB4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9982381	GTA	synonymous	NA	NA	NA	NA
M3	chr10	62966742	12A2p6	cell line	sgMsh2	62966742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	49	3	1	0.333333333	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon17:c.A2638G:p.S880G	10qB4	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9898585	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	68097065	12A2p6	cell line	sgMsh2	68097065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	104	72	13	0.180555556	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.C3006A:p.S1002R	10qB5.2	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	0.993501529	1	0.9995507	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr10	70283983	12A2p6	cell line	sgMsh2	70283983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	85	3	0	0	exonic	Slc16a9	synonymous SNV	Slc16a9:NM_025807:exon6:c.T1455C:p.D485D	10qB5.3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9988469	ATA	synonymous	NA	NA	NA	NA
M3	chr10	74342562	12A2p6	cell line	sgMsh2	74342562	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	43	0	0	NA	exonic	Pcdh15	frameshift deletion	"Pcdh15:NM_001142738:exon13:c.1539delG:p.G515Afs*5,Pcdh15:NM_001142736:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142740:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142743:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142748:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142747:exon15:c.1665delG:p.G557Afs*5"	10qB5.3	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr10	75125037	12A2p6	cell line	sgMsh2	75125037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	46	32	11	0.34375	exonic	Bcr	synonymous SNV	Bcr:NM_001081412:exon2:c.A1299T:p.G433G	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9878595	GAA	synonymous	NA	NA	NA	NA
M3	chr10	75642257	12A2p6	cell line	sgMsh2	75642257	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	71	0	0	NA	exonic	Susd2	frameshift deletion	Susd2:NM_027890:exon3:c.298delA:p.T100Pfs*42	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr10	76605074	12A2p6	cell line	sgMsh2	76605074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	55	1	0	0	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon22:c.A1765G:p.I589V,Col6a2:NM_146007:exon22:c.A1765G:p.I589V"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9929299	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	40	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	0.753690815	1	0.7284973	CTG	synonymous	NA	NA	NA	NA
M3	chr10	78202959	12A2p6	cell line	sgMsh2	78202959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	57	45	17	0.377777778	exonic	Trappc10	synonymous SNV	Trappc10:NM_001081055:exon15:c.T2298C:p.F766F	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9937324	CAA	synonymous	NA	NA	NA	NA
M3	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	86	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9989147	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	79017655	12A2p6	cell line	sgMsh2	79017655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	160	0	0	NA	exonic	Olfr1351	nonsynonymous SNV	Olfr1351:NM_147040:exon1:c.T332G:p.L111R	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999878	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr10	79740329	12A2p6	cell line	sgMsh2	79740329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	35	8	1	0.125	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon9:c.C1579A:p.L527M	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.976612	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr10	79743534	12A2p6	cell line	sgMsh2	79743534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	64	30	9	0.3	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon3:c.A382G:p.T128A	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9958915	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr10	80011990	12A2p6	cell line	sgMsh2	80011990	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	39	11	1	0.090909091	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon39:c.5421delG:p.A1809Lfs*6,Abca7:NM_013850:exon39:c.5397delG:p.A1801Lfs*6"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	0.877878507	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr10	80274827	12A2p6	cell line	sgMsh2	80274827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	37	254	84	0.330708661	exonic	Dazap1	synonymous SNV	"Dazap1:NM_001122604:exon4:c.T261G:p.P87P,Dazap1:NM_001122605:exon4:c.T261G:p.P87P,Dazap1:NM_001378995:exon4:c.T261G:p.P87P,Dazap1:NM_133188:exon4:c.T261G:p.P87P"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	2	1	1	0.9792282	CTC	synonymous	G	5	GGGGG	NA
M3	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	49	2	1	0.5	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9898585	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M3	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	38	4	2	0.5	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9804267	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	25	7	1	0.142857143	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	2	1	1	0.9579167	GTA	synonymous	NA	NA	NA	NA
M3	chr10	80326183	12A2p6	cell line	sgMsh2	80326183	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	52	0	0	NA	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon3:c.T355A:p.W119R	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9915312	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.7	8	33	9	0.272727273	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	2	1	1	0.8887944	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	53	118	41	0.347457627	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-80836442	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr10	80905207	12A2p6	cell line	sgMsh2	80905207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	35	57	13	0.228070175	exonic	Lmnb2	nonsynonymous SNV	"Lmnb2:NM_001347140:exon2:c.G297T:p.E99D,Lmnb2:NM_010722:exon5:c.G720T:p.E240D"	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.976612	CCT	nonsynonymous	TCCACC	12	TCCACCTCCACC	NA
M3	chr10	80931054	12A2p6	cell line	sgMsh2	80931054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	55	53	20	0.377358491	exonic	Gadd45b	nonsynonymous SNV	Gadd45b:NM_008655:exon3:c.C172T:p.L58F	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr10	81271396	12A2p6	cell line	sgMsh2	81271396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	50	14	0.28	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon6:c.T872C:p.I291T	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr10	82985893	12A2p6	cell line	sgMsh2	82985893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	50	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon1:c.G29A:p.R10K	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.982212	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr10	83506667	12A2p6	cell line	sgMsh2	83506667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	72	5	0	0	exonic	Aldh1l2	synonymous SNV	Aldh1l2:NM_153543:exon13:c.T1617C:p.A539A	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	GAG	synonymous	NA	NA	NA	NA
M3	chr10	83591052	12A2p6	cell line	sgMsh2	83591052	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	92	79	17	0.215189873	exonic	Washc4	nonsynonymous SNV	Washc4:NM_001033375:exon31:c.T3223A:p.S1075T	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr10	84528116	12A2p6	cell line	sgMsh2	84528116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	67	137	28	0.204379562	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A1082G:p.K361R	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9965726	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	84656068	12A2p6	cell line	sgMsh2	84656068	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	133	51	14	0.274509804	exonic	Polr3b	nonsynonymous SNV	Polr3b:NM_027423:exon12:c.T1090A:p.L364M	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9997639	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr10	86719641	12A2p6	cell line	sgMsh2	86719641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	134	0	0	NA	exonic	Ttc41	synonymous SNV	"Ttc41:NM_153595:exon2:c.T960C:p.G320G,Ttc41:NM_001003910:exon3:c.T960C:p.G320G,Ttc41:NM_001003939:exon4:c.T960C:p.G320G"	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999409	GTT	synonymous	NA	NA	NA	NA
M3	chr10	86850611	12A2p6	cell line	sgMsh2	86850611	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	104	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon63:c.T6954A:p.N2318K	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr10	87913683	12A2p6	cell line	sgMsh2	87913683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	79	0	0	NA	exonic	Igf1	synonymous SNV	"Igf1:NM_001111274:exon3:c.T237C:p.C79C,Igf1:NM_001111275:exon3:c.T285C:p.C95C,Igf1:NM_001111276:exon3:c.T237C:p.C79C,Igf1:NM_010512:exon3:c.T285C:p.C95C,Igf1:NM_001314010:exon4:c.T285C:p.C95C"	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	GTT	synonymous	NA	NA	NA	NA
M3	chr10	88536393	12A2p6	cell line	sgMsh2	88536393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	93	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon20:c.C2332T:p.R778C,Mybpc1:NM_175418:exon21:c.C2374T:p.R792C"	10qC1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr10	89806141	12A2p6	cell line	sgMsh2	89806141	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	81	70	3	0.042857143	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.3173delT:p.L1058Pfs*23	10qC2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.740843813	NA	NA	CTC	frameshift	NA	NA	NA	-1
M3	chr10	95490286	12A2p6	cell line	sgMsh2	95490286	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	68	195	29	0.148717949	exonic	Mrpl42	nonsynonymous SNV	"Mrpl42:NM_001359476:exon5:c.G343A:p.V115M,Mrpl42:NM_026065:exon5:c.G343A:p.V115M"	10qC2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.453927423	2	0.7882625	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr10	97517618	12A2p6	cell line	sgMsh2	97517618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	123	0	0	NA	exonic	Dcn	nonsynonymous SNV	"Dcn:NM_001190451:exon8:c.A1028T:p.Y343F,Dcn:NM_007833:exon8:c.A1028T:p.Y343F"	10qC3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr10	100572898	12A2p6	cell line	sgMsh2	100572898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	38	63	17	0.26984127	exonic	Cep290	nonsynonymous SNV	Cep290:NM_146009:exon54:c.A7231G:p.K2411E	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9804267	GAA	nonsynonymous	A	5	AAAAA	NA
M3	chr10	102482413	12A2p6	cell line	sgMsh2	102482413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	72	0	0	NA	exonic	Nts	nonsynonymous SNV	Nts:NM_024435:exon4:c.T428C:p.I143T	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	GAT	nonsynonymous	T	5	TTTTT	NA
M3	chr10	105823174	12A2p6	cell line	sgMsh2	105823174	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	88	10	0	0	exonic	Mettl25	frameshift deletion	"Mettl25:NM_207522:exon5:c.1247delA:p.N416Tfs*19,Mettl25:NM_001359640:exon6:c.812delA:p.N271Tfs*19,Mettl25:NM_001359642:exon6:c.812delA:p.N271Tfs*19"	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr10	108690913	12A2p6	cell line	sgMsh2	108690913	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	82	0	0	NA	exonic	Syt1	nonsynonymous SNV	"Syt1:NM_001252342:exon4:c.A134T:p.K45M,Syt1:NM_001358501:exon4:c.A134T:p.K45M,Syt1:NM_001358503:exon4:c.A134T:p.K45M,Syt1:NM_009306:exon4:c.A134T:p.K45M,Syt1:NM_001252341:exon5:c.A134T:p.K45M,Syt1:NM_001358504:exon5:c.A134T:p.K45M,Syt1:NM_001358506:exon5:c.A134T:p.K45M,Syt1:NM_001358502:exon6:c.A134T:p.K45M"	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9986171	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	109707907	12A2p6	cell line	sgMsh2	109707907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	122	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001368815:exon29:c.A5665G:p.S1889G,Nav3:NM_001081035:exon30:c.A5686G:p.S1896G"	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998776	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr10	109764975	12A2p6	cell line	sgMsh2	109764975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	44	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon16:c.G3790A:p.A1264T,Nav3:NM_001368815:exon16:c.G3790A:p.A1264T"	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9863153	GCA	nonsynonymous	NA	NA	NA	NA
M3	chr10	109853277	12A2p6	cell line	sgMsh2	109853277	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	89	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon8:c.G1138A:p.G380R,Nav3:NM_001368815:exon8:c.G1138A:p.G380R"	10qD1	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9955628	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	101	11	4	0.363636364	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr10	117671739	12A2p6	cell line	sgMsh2	117671739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	121	6	4	0.666666667	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon6:c.A760G:p.N254D	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9998699	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr10	117690486	12A2p6	cell line	sgMsh2	117690486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	212	165	42	0.254545455	exonic	Mdm2	synonymous SNV	"Mdm2:NM_001288586:exon11:c.T1047G:p.T349T,Mdm2:NM_010786:exon12:c.T1194G:p.T398T"	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	AAG	synonymous	NA	NA	NA	NA
M3	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	46	27	10	0.37037037	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9878595	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M3	chr10	121596189	12A2p6	cell line	sgMsh2	121596189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	90	87	14	0.16091954	exonic	Xpot	nonsynonymous SNV	"Xpot:NM_001081056:exon23:c.A2800G:p.I934V,Xpot:NM_001359618:exon23:c.A2800G:p.I934V"	10qD2	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991482	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr10	125228163	12A2p6	cell line	sgMsh2	125228163	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	109	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon6:c.G1304T:p.R435M,Slc16a7:NM_001358915:exon6:c.G1304T:p.R435M,Slc16a7:NM_011391:exon7:c.G1304T:p.R435M"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.432515752	3	7.76E-06	CCT	nonsynonymous	TCCTT	10	TCCTTTCCTT	NA
M3	chr10	126008573	12A2p6	cell line	sgMsh2	126008573	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	112	9	0	0	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon14:c.C1905A:p.A635A	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997755	CCT	synonymous	NA	NA	NA	NA
M3	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	61	11	0	0	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	CCG	synonymous	NA	NA	NA	NA
M3	chr10	127283710	12A2p6	cell line	sgMsh2	127283710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	26	34	9	0.264705882	exonic	Mbd6	nonsynonymous SNV	"Mbd6:NM_001347171:exon10:c.A2636G:p.K879R,Mbd6:NM_001379570:exon10:c.A2639G:p.K880R,Mbd6:NM_001379571:exon10:c.A2639G:p.K880R,Mbd6:NM_033072:exon10:c.A2642G:p.K881R"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9602973	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	127300561	12A2p6	cell line	sgMsh2	127300561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	69	163	38	0.233128834	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon12:c.A1394G:p.D465G,Mars1:NM_001171582:exon12:c.A1394G:p.D465G"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr10	127333574	12A2p6	cell line	sgMsh2	127333574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	53	0	0	NA	exonic	Gli1	synonymous SNV	Gli1:NM_010296:exon11:c.T1311C:p.S437S	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.985594	CAC	synonymous	NA	NA	NA	NA
M3	chr10	127462204	12A2p6	cell line	sgMsh2	127462204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	92	121	40	0.330578512	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001359243:exon10:c.A827G:p.Q276R,R3hdm2:NM_001359246:exon10:c.A827G:p.Q276R,R3hdm2:NM_001168292:exon11:c.A827G:p.Q276R"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	127498509	12A2p6	cell line	sgMsh2	127498509	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	22	42	8	0.19047619	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359245:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359246:exon24:c.2881delG:p.D963Tfs*19,R3hdm2:NM_027900:exon24:c.2800delG:p.D936Tfs*19,R3hdm2:NM_001359243:exon25:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001168292:exon26:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001359244:exon26:c.2839delG:p.D949Tfs*19"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3	chr10	128634570	12A2p6	cell line	sgMsh2	128634570	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	51	0	0	NA	exonic	Ikzf4	synonymous SNV	"Ikzf4:NM_001358537:exon8:c.A1074C:p.R358R,Ikzf4:NM_011772:exon8:c.A1239C:p.R413R,Ikzf4:NM_001358536:exon9:c.A1074C:p.R358R"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	2	1	1	0.9910065	GTC	synonymous	NA	NA	NA	NA
M3	chr10	128699547	12A2p6	cell line	sgMsh2	128699547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	74	48	20	0.416666667	exonic	Cdk2	synonymous SNV	"Cdk2:NM_016756:exon6:c.T717C:p.S239S,Cdk2:NM_183417:exon7:c.T861C:p.S287S"	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	AAC	synonymous	NA	NA	NA	NA
M3	chr10	129238632	12A2p6	cell line	sgMsh2	129238632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	311	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T482G:p.F161C	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	2.29E-09	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr10	129437268	12A2p6	cell line	sgMsh2	129437268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	188	0	0	NA	exonic	Olfr786	nonsynonymous SNV	Olfr786:NM_146549:exon1:c.T455C:p.L152P	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9999946	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr10	129501642	12A2p6	cell line	sgMsh2	129501642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	113	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.G757A:p.V253I	10qD3	chr10-80852660-129526639	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr10	129607790	12A2p6	cell line	sgMsh2	129607790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	89	0	0	NA	exonic	Olfr796	synonymous SNV	Olfr796:NM_146931:exon1:c.T690G:p.A230A	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M3	chr10	129607852	12A2p6	cell line	sgMsh2	129607852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	87	0	0	NA	exonic	Olfr796	nonsynonymous SNV	Olfr796:NM_146931:exon1:c.A628G:p.I210V	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr10	129625486	12A2p6	cell line	sgMsh2	129625486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	297	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T574G:p.F192V	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr10	129670245	12A2p6	cell line	sgMsh2	129670245	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	250	0	0	NA	exonic	Olfr801	synonymous SNV	Olfr801:NM_146285:exon1:c.C273A:p.S91S	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M3	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	158	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.A763T:p.M255L	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATA	nonsynonymous	A	5	AAAAA	NA
M3	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;MuSe;Vardict	3	0.115	209	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr10	130446820	12A2p6	cell line	sgMsh2	130446820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	359	0	0	NA	exonic	Vmn2r86	synonymous SNV	Vmn2r86:NM_001103365:exon6:c.T1926C:p.H642H	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAT	synonymous	NA	NA	NA	NA
M3	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	297	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	83	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9986984	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr11	3976369	12A2p6	cell line	sgMsh2	3976369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	83	205	37	0.180487805	exonic	Pes1	nonsynonymous SNV	Pes1:NM_022889:exon10:c.T991C:p.F331L	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.932669	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	4146243	12A2p6	cell line	sgMsh2	4146243	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.362	9	4	0	0	exonic	Ccdc157	frameshift deletion	"Ccdc157:NM_001164620:exon9:c.1672delC:p.Q558Rfs*36,Ccdc157:NM_177616:exon10:c.1366delC:p.Q456Rfs*36"	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3	chr11	4215006	12A2p6	cell line	sgMsh2	4215006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	50	26	6	0.230769231	exonic	Tbc1d10a	synonymous SNV	Tbc1d10a:NM_134023:exon9:c.A1356G:p.T452T	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9904495	CAG	synonymous	NA	NA	NA	NA
M3	chr11	4816104	12A2p6	cell line	sgMsh2	4816104	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	101	114	19	0.166666667	exonic	Nf2	nonsynonymous SNV	"Nf2:NM_001361675:exon3:c.C302T:p.A101V,Nf2:NM_001361676:exon3:c.C302T:p.A101V,Nf2:NM_001252250:exon4:c.C425T:p.A142V,Nf2:NM_001252251:exon4:c.C425T:p.A142V,Nf2:NM_001252252:exon4:c.C425T:p.A142V,Nf2:NM_001252253:exon4:c.C311T:p.A104V,Nf2:NM_001361677:exon4:c.C425T:p.A142V,Nf2:NM_010898:exon4:c.C425T:p.A142V"	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr11	5058511	12A2p6	cell line	sgMsh2	5058511	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.136	24	0	0	NA	exonic	Rasl10a	nonsynonymous SNV	"Rasl10a:NM_001363179:exon1:c.C206A:p.P69H,Rasl10a:NM_145216:exon1:c.C206A:p.P69H"	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.582397448	2	0.4996181	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr11	6598026	12A2p6	cell line	sgMsh2	6598026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	142	1	0	0	exonic	Nacad	synonymous SNV	Nacad:NM_001081652:exon7:c.T4479C:p.S1493S	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999636	CAC	synonymous	NA	NA	NA	NA
M3	chr11	7139118	12A2p6	cell line	sgMsh2	7139118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	65	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon8:c.A1531G:p.M511V	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.09662983	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	9031514	12A2p6	cell line	sgMsh2	9031514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	87	0	0	NA	exonic	Sun3	nonsynonymous SNV	Sun3:NM_001290519:exon3:c.A89C:p.K30T	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9989785	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	9273928	12A2p6	cell line	sgMsh2	9273928	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	220	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon11:c.T1306A:p.S436T	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	12249810	12A2p6	cell line	sgMsh2	12249810	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	50	7	0	0	exonic	Cobl	frameshift deletion	"Cobl:NM_001282993:exon13:c.3761delC:p.P1254Hfs*18,Cobl:NM_001282994:exon14:c.3815delC:p.P1272Hfs*18,Cobl:NM_172496:exon14:c.3836delC:p.P1279Hfs*18"	11qA1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.984936861	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr11	19016358	12A2p6	cell line	sgMsh2	19016358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	31	0	0	NA	exonic	Meis1	nonsynonymous SNV	"Meis1:NM_001193271:exon2:c.A14G:p.Y5C,Meis1:NM_010789:exon2:c.A14G:p.Y5C"	11qA3.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	GTA	nonsynonymous	GTC	8	GTCGTCGT	NA
M3	chr11	21711600	12A2p6	cell line	sgMsh2	21711600	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	148	14	3	0.214285714	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon9:c.G634A:p.V212I,Wdpcp:NM_145425:exon10:c.G871A:p.V291I"	11qA3.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999747	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	104	12	6	0.5	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9959437	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	22137982	12A2p6	cell line	sgMsh2	22137982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	21	5	0.238095238	exonic	Ehbp1	synonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1176G:p.E392E,Ehbp1:NM_153078:exon11:c.A1101G:p.E367E"	11qA3.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9965726	GTT	synonymous	NA	NA	NA	NA
M3	chr11	22138040	12A2p6	cell line	sgMsh2	22138040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	95	36	13	0.361111111	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1118G:p.E373G,Ehbp1:NM_153078:exon11:c.A1043G:p.E348G"	11qA3.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9987412	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	23625036	12A2p6	cell line	sgMsh2	23625036	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	81	61	23	0.37704918	exonic	0610010F05Rik	synonymous SNV	0610010F05Rik:NM_027860:exon4:c.T237G:p.G79G	11qA3.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	GAC	synonymous	NA	NA	NA	NA
M3	chr11	23625084	12A2p6	cell line	sgMsh2	23625084	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	73	60	18	0.3	exonic	0610010F05Rik	nonsynonymous SNV	0610010F05Rik:NM_027860:exon4:c.T189A:p.S63R	11qA3.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	24085488	12A2p6	cell line	sgMsh2	24085488	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	87	0	0	NA	exonic	Bcl11a	nonsynonymous SNV	"Bcl11a:NM_001159289:exon2:c.C223A:p.L75I,Bcl11a:NM_001159290:exon2:c.C67A:p.L23I,Bcl11a:NM_001242934:exon2:c.C223A:p.L75I,Bcl11a:NM_016707:exon2:c.C223A:p.L75I"	11qA3.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr11	26483301	12A2p6	cell line	sgMsh2	26483301	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	44	17	2	0.117647059	exonic	Vrk2	nonsynonymous SNV	"Vrk2:NM_001252447:exon11:c.T880A:p.Y294N,Vrk2:NM_027260:exon11:c.T880A:p.Y294N"	11qA3.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9863153	TAC	nonsynonymous	ACAT	8	ACATACAT	NA
M3	chr11	28910630	12A2p6	cell line	sgMsh2	28910630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	141	172	46	0.26744186	exonic	Efemp1	nonsynonymous SNV	Efemp1:NM_146015:exon5:c.G538T:p.G180W	11qA3.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr11	29482310	12A2p6	cell line	sgMsh2	29482310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	96	56	12	0.214285714	exonic	Ccdc88a	nonsynonymous SNV	"Ccdc88a:NM_001363368:exon20:c.T3526C:p.S1176P,Ccdc88a:NM_001363369:exon20:c.T3526C:p.S1176P,Ccdc88a:NM_176841:exon20:c.T3526C:p.S1176P"	11qA3.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9596699	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	29736364	12A2p6	cell line	sgMsh2	29736364	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.323	106	1046	111	0.106118547	exonic	Rtn4	nonsynonymous SNV	"Rtn4:NM_024226:exon3:c.T247G:p.Y83D,Rtn4:NM_194052:exon3:c.T718G:p.Y240D,Rtn4:NM_194053:exon4:c.T775G:p.Y259D,Rtn4:NM_194051:exon5:c.T2788G:p.Y930D,Rtn4:NM_194054:exon5:c.T3136G:p.Y1046D"	11qA3.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.999677	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr11	30219716	12A2p6	cell line	sgMsh2	30219716	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	84	158	42	0.265822785	exonic	Sptbn1	nonsynonymous SNV	Sptbn1:NM_175836:exon1:c.C11T:p.T4M	11qA3.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9683083	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr11	30426246	12A2p6	cell line	sgMsh2	30426246	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.247	109	0	0	NA	exonic	4930505A04Rik	frameshift insertion	4930505A04Rik:NM_001100394:exon5:c.619dupA:p.T207Nfs*72	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M3	chr11	30454689	12A2p6	cell line	sgMsh2	30454689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	124	0	0	NA	exonic	4930505A04Rik	synonymous SNV	4930505A04Rik:NM_001100394:exon2:c.T213C:p.N71N	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	TAT	synonymous	NA	NA	NA	NA
M3	chr11	30845277	12A2p6	cell line	sgMsh2	30845277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	149	189	47	0.248677249	exonic	Psme4	synonymous SNV	Psme4:NM_134013:exon33:c.A3786G:p.E1262E	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.744717	AAT	synonymous	NA	NA	NA	NA
M3	chr11	30845305	12A2p6	cell line	sgMsh2	30845305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	152	148	33	0.222972973	exonic	Psme4	nonsynonymous SNV	Psme4:NM_134013:exon33:c.A3814C:p.T1272P	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7426494	AAC	nonsynonymous	A	5	AAAAA	NA
M3	chr11	30891948	12A2p6	cell line	sgMsh2	30891948	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	204	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.A852C:p.Q284H	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9999889	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr11	30949946	12A2p6	cell line	sgMsh2	30949946	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	128	137	21	0.153284672	exonic	Erlec1	nonsynonymous SNV	Erlec1:NM_025745:exon6:c.T522A:p.N174K	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7588817	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	138	52	10	0.192307692	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9994514	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	93	24	0.258064516	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	CTT	synonymous	NA	NA	NA	NA
M3	chr11	34402371	12A2p6	cell line	sgMsh2	34402371	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	93	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.C412A:p.L138I	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	135	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9996949	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	34691926	12A2p6	cell line	sgMsh2	34691926	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	121	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon19:c.T1901G:p.L634R	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9998587	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	34825436	12A2p6	cell line	sgMsh2	34825436	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	33	6	0.181818182	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon3:c.A260T:p.K87M	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9339766	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	35632828	12A2p6	cell line	sgMsh2	35632828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	77	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon19:c.A2090G:p.K697R	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	35841755	12A2p6	cell line	sgMsh2	35841755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	32	187	42	0.22459893	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon21:c.A3125G:p.K1042R	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9720747	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
M3	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	55	155	51	0.329032258	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	CAC	synonymous	NA	NA	NA	NA
M3	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	146	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	GTT	synonymous	NA	NA	NA	NA
M3	chr11	36068389	12A2p6	cell line	sgMsh2	36068389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	129	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon16:c.T3236C:p.L1079P,Tenm2:NM_011856:exon17:c.T3329C:p.L1110P"	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9998962	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	36221410	12A2p6	cell line	sgMsh2	36221411	TT	AA	DBS	Mutect2;Vardict	2	0.309	112	0	0	NA	exonic	Tenm2	nonframeshift substitution	Tenm2:NM_011856:exon6:c.1306_1307TT:p.K436L	11qA4	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	40710181	12A2p6	cell line	sgMsh2	40710181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	297	33	4	0.121212121	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1361G:p.D454G	11qA5	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9983998	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	43835686	12A2p6	cell line	sgMsh2	43835686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	79	1	0	0	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon1:c.A403G:p.S135G,Adra1b:NM_001284380:exon3:c.A403G:p.S135G,Adra1b:NM_001284381:exon4:c.A403G:p.S135G"	11qB1.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	46150613	12A2p6	cell line	sgMsh2	46150613	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	0	0	NA	exonic	Nipal4	synonymous SNV	Nipal4:NM_172524:exon6:c.A754C:p.R252R	11qB1.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9712038	CTA	synonymous	NA	NA	NA	NA
M3	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	99	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	ATG	synonymous	NA	NA	NA	NA
M3	chr11	49341357	12A2p6	cell line	sgMsh2	49341357	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	252	0	0	NA	exonic	Olfr1390	frameshift deletion	Olfr1390:NM_147065:exon1:c.824delT:p.Y277Ifs*10	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.91213718	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	224	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999987	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr11	49430691	12A2p6	cell line	sgMsh2	49430691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T214C:p.C72R	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9999385	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	49430856	12A2p6	cell line	sgMsh2	49430856	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	211	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T379A:p.C127S	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999994	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	49681178	12A2p6	cell line	sgMsh2	49681178	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	149	279	79	0.283154122	exonic	Cnot6	synonymous SNV	"Cnot6:NM_001290741:exon9:c.A990T:p.V330V,Cnot6:NM_001363356:exon9:c.A990T:p.V330V,Cnot6:NM_001363357:exon9:c.A690T:p.V230V,Cnot6:NM_212484:exon9:c.A975T:p.V325V"	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.762255484	2	0.5770781	GTA	synonymous	NA	NA	NA	NA
M3	chr11	49823804	12A2p6	cell line	sgMsh2	49823804	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	197	0	0	NA	exonic	Gfpt2	synonymous SNV	Gfpt2:NM_013529:exon11:c.T1029A:p.G343G	11qB1.2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999987	GTC	synonymous	NA	NA	NA	NA
M3	chr11	50202478	12A2p6	cell line	sgMsh2	50202478	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	73	906	207	0.228476821	exonic	Sqstm1	nonsynonymous SNV	Sqstm1:NM_011018:exon7:c.A1092C:p.E364D	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9976155	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	50234500	12A2p6	cell line	sgMsh2	50234500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	142	147	37	0.25170068	exonic	Mgat4b	nonsynonymous SNV	Mgat4b:NM_145926:exon14:c.C1601T:p.P534L	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9995376	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr11	50382808	12A2p6	cell line	sgMsh2	50382808	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	279	417	100	0.239808153	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362529:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362530:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362533:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362534:exon6:c.G121A:p.G41S,Hnrnph1:NM_001347487:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362522:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362524:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362525:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362527:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362528:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362532:exon7:c.G724A:p.G242S,Hnrnph1:NM_021510:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362523:exon8:c.G724A:p.G242S"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.800796491	1	0.7924341	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr11	50985059	12A2p6	cell line	sgMsh2	50985059	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.26	362	0	0	NA	exonic	Olfr1377	synonymous SNV	Olfr1377:NM_146911:exon1:c.C357A:p.A119A	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	1.06E-09	CCT	synonymous	NA	NA	NA	NA
M3	chr11	51825013	12A2p6	cell line	sgMsh2	51825013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	29	39	10	0.256410256	exonic	Jade2	nonsynonymous SNV	"Jade2:NM_199299:exon9:c.C1364T:p.A455V,Jade2:NM_001357588:exon10:c.C1580T:p.A527V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	9.02E-05	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr11	52037476	12A2p6	cell line	sgMsh2	52037476	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	172	2	0	0	exonic	Cdkl3	frameshift deletion	Cdkl3:NM_153785:exon13:c.1771delT:p.S594Pfs*8	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M3	chr11	53536055	12A2p6	cell line	sgMsh2	53536055	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	93	72	17	0.236111111	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon5:c.C642T:p.I214I,Septin8:NM_001252333:exon5:c.C636T:p.I212I,Septin8:NM_001347496:exon5:c.C642T:p.I214I,Septin8:NM_001361968:exon5:c.C636T:p.I212I,Septin8:NM_001361969:exon5:c.C456T:p.I152I,Septin8:NM_033144:exon5:c.C642T:p.I214I"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	TCT	synonymous	NA	NA	NA	NA
M3	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	39	78	26	0.333333333	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9815572	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	150	3	0	0	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999776	AAC	nonsynonymous	A	5	AAAAA	NA
M3	chr11	58597595	12A2p6	cell line	sgMsh2	58597595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	106	0	0	NA	exonic	Olfr324	synonymous SNV	Olfr324:NM_001011743:exon1:c.T204C:p.A68A	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9995402	CTC	synonymous	NA	NA	NA	NA
M3	chr11	58918897	12A2p6	cell line	sgMsh2	58918897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	164	0	0	NA	exonic	Btnl10	nonsynonymous SNV	"Btnl10:NM_001363414:exon2:c.A28G:p.T10A,Btnl10:NM_138678:exon2:c.A28G:p.T10A"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999904	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	58994422	12A2p6	cell line	sgMsh2	58994422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	46	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon104:c.C24009T:p.F8003F	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	9.91E-06	GGA	synonymous	NA	NA	NA	NA
M3	chr11	59003277	12A2p6	cell line	sgMsh2	59003277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	101	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon88:c.T20152C:p.Y6718H	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	59042160	12A2p6	cell line	sgMsh2	59042160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	118	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon54:c.T14389C:p.L4797L,Obscn:NM_199152:exon61:c.T16348C:p.L5450L"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	AAC	synonymous	NA	NA	NA	NA
M3	chr11	59061024	12A2p6	cell line	sgMsh2	59061024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	274	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon44:c.A11902G:p.K3968E,Obscn:NM_199152:exon47:c.A12793G:p.K4265E"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9999951	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	59063667	12A2p6	cell line	sgMsh2	59063667	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	57	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon41:c.11088delT:p.F3696Lfs*1,Obscn:NM_199152:exon43:c.11715delT:p.F3905Lfs*1"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.993501529	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3	chr11	59080869	12A2p6	cell line	sgMsh2	59080869	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.118	27	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon22:c.C6519T:p.P2173P,Obscn:NM_199152:exon24:c.C7146T:p.P2382P"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.505315433	2	0.6702027	CGG	synonymous	NA	NA	NA	NA
M3	chr11	59082657	12A2p6	cell line	sgMsh2	59082657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	59	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon19:c.T5847C:p.R1949R,Obscn:NM_199152:exon21:c.T6474C:p.R2158R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9944444	CAC	synonymous	NA	NA	NA	NA
M3	chr11	59131555	12A2p6	cell line	sgMsh2	59131555	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	14	0	0	NA	exonic	Obscn	stopgain	"Obscn:NM_001171512:exon6:c.T2363A:p.L788X,Obscn:NM_199152:exon6:c.T2363A:p.L788X"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9208679	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr11	59503502	12A2p6	cell line	sgMsh2	59503502	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	22	38	10	0.263157895	exonic	Zkscan17	nonsynonymous SNV	"Zkscan17:NM_001130529:exon4:c.T212C:p.L71S,Zkscan17:NM_172941:exon4:c.T272C:p.L91S"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9499239	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr11	59769987	12A2p6	cell line	sgMsh2	59769987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	82	567	150	0.264550265	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_012027:exon21:c.A2897G:p.K966R,Mprip:NM_201245:exon21:c.A2897G:p.K966R,Mprip:NM_001368931:exon22:c.A7055G:p.K2352R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.6766088	2	8.95E-05	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr11	59976887	12A2p6	cell line	sgMsh2	59976887	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	58	8	0	0	exonic	Pemt	nonsynonymous SNV	"Pemt:NM_001290011:exon4:c.T418G:p.F140V,Pemt:NM_001290012:exon4:c.T307G:p.F103V,Pemt:NM_001290013:exon4:c.T307G:p.F103V,Pemt:NM_008819:exon4:c.T307G:p.F103V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.526727104	2	0.9341388	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	60476821	12A2p6	cell line	sgMsh2	60476821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_001103171:exon2:c.A406G:p.K136E,Myo15:NM_010862:exon2:c.A406G:p.K136E"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr11	60779236	12A2p6	cell line	sgMsh2	60779236	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	172	90	22	0.244444444	exonic	Smcr8	nonsynonymous SNV	"Smcr8:NM_001085440:exon1:c.A1209C:p.E403D,Smcr8:NM_175491:exon1:c.A1209C:p.E403D"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999941	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	61449691	12A2p6	cell line	sgMsh2	61449691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	42	0	0	NA	exonic	Rnf112	nonsynonymous SNV	"Rnf112:NM_001291024:exon14:c.T1612C:p.S538P,Rnf112:NM_001359130:exon14:c.T1756C:p.S586P,Rnf112:NM_009548:exon15:c.T1681C:p.S561P"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9845778	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	61492914	12A2p6	cell line	sgMsh2	61492914	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	86	69	9	0.130434783	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon2:c.T388A:p.F130I,Mapk7:NM_001291037:exon2:c.T178A:p.F60I,Mapk7:NM_001291033:exon3:c.T181A:p.F61I,Mapk7:NM_011841:exon3:c.T388A:p.F130I"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.745126147	1	0.5113628	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	72	106	24	0.226415094	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	61779733	12A2p6	cell line	sgMsh2	61779733	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	64	50	11	0.22	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon26:c.T2996A:p.L999H	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	61834867	12A2p6	cell line	sgMsh2	61834867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	141	38	9	0.236842105	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon6:c.A382G:p.I128V	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr11	62118270	12A2p6	cell line	sgMsh2	62118270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	158	96	30	0.3125	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.T611C:p.F204S,Specc1:NM_001281818:exon4:c.T851C:p.F284S,Specc1:NM_001310526:exon4:c.T851C:p.F284S"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999862	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	62119127	12A2p6	cell line	sgMsh2	62119127	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	120	141	38	0.269503546	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.A1468G:p.T490A,Specc1:NM_001281818:exon4:c.A1708G:p.T570A,Specc1:NM_001310526:exon4:c.A1708G:p.T570A"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	62249372	12A2p6	cell line	sgMsh2	62249372	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	57	0	0	NA	exonic	Adora2b	nonsynonymous SNV	Adora2b:NM_007413:exon1:c.A271C:p.S91R	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9937324	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	62334572	12A2p6	cell line	sgMsh2	62334572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	124	137	24	0.175182482	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon35:c.A5362G:p.R1788G,Ncor1:NM_011308:exon35:c.A5161G:p.R1721G"	11qB2	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	63070310	12A2p6	cell line	sgMsh2	63070310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	136	0	0	NA	exonic	Tekt3	nonsynonymous SNV	Tekt3:NM_027660:exon2:c.T304C:p.S102P	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9926108	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	63094781	12A2p6	cell line	sgMsh2	63094781	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	83	0	0	NA	exonic	Tekt3	frameshift deletion	Tekt3:NM_027660:exon8:c.1412delA:p.K472Nfs*2	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.873596172	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr11	65039187	12A2p6	cell line	sgMsh2	65039187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	10	1	0.1	exonic	Arhgap44	synonymous SNV	"Arhgap44:NM_001099288:exon9:c.C697T:p.L233L,Arhgap44:NM_175003:exon9:c.C697T:p.L233L"	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9845778	AGC	synonymous	NA	NA	NA	NA
M3	chr11	65187431	12A2p6	cell line	sgMsh2	65187431	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	56	0	0	NA	exonic	Myocd	nonsynonymous SNV	"Myocd:NM_145136:exon10:c.C1537T:p.P513S,Myocd:NM_146386:exon10:c.C1537T:p.P513S"	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9933432	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr11	66145267	12A2p6	cell line	sgMsh2	66145267	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.202	108	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.G1316A:p.G439D	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.974682	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr11	66145269	12A2p6	cell line	sgMsh2	66145269	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.202	108	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.T1314A:p.D438E	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.974682	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	66155422	12A2p6	cell line	sgMsh2	66155422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	103	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon4:c.A893T:p.E298V	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	67025212	12A2p6	cell line	sgMsh2	67025212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	25	0	0	NA	exonic	Tmem220	synonymous SNV	"Tmem220:NM_001291042:exon1:c.T34C:p.L12L,Tmem220:NM_001291043:exon1:c.T34C:p.L12L,Tmem220:NM_177392:exon1:c.T34C:p.L12L"	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9579167	CTT	synonymous	NA	NA	NA	NA
M3	chr11	67100859	12A2p6	cell line	sgMsh2	67100859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	137	0	0	NA	exonic	Myh3	nonsynonymous SNV	Myh3:NM_001099635:exon37:c.T5348C:p.M1783T	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999507	ATG	nonsynonymous	GAA	9	GAAGAAGAA	NA
M3	chr11	67185256	12A2p6	cell line	sgMsh2	67185256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	197	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon20:c.T2268A:p.I756I	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999987	TTG	synonymous	CATTGA	13	CATTGACATTGAC	NA
M3	chr11	67197288	12A2p6	cell line	sgMsh2	67197288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	119	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon40:c.T5729C:p.L1910P	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9998532	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	212	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr11	67243457	12A2p6	cell line	sgMsh2	67243457	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	326	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon11:c.T937G:p.F313V	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9963595	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	67289796	12A2p6	cell line	sgMsh2	67289796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Myh8	synonymous SNV	Myh8:NM_177369:exon16:c.T1857C:p.T619T	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	CTC	synonymous	NA	NA	NA	NA
M3	chr11	68590905	12A2p6	cell line	sgMsh2	68590905	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	66	0	0	NA	exonic	Ccdc42	frameshift deletion	Ccdc42:NM_177779:exon4:c.324delA:p.A111Pfs*6	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.805078826	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr11	68784960	12A2p6	cell line	sgMsh2	68784960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	213	50	26	0.52	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon18:c.A2214G:p.K738K	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	AAG	synonymous	NA	NA	NA	NA
M3	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	38	39	5	0.128205128	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	1	1	0.9804267	AAC	synonymous	NA	NA	NA	NA
M3	chr11	68814480	12A2p6	cell line	sgMsh2	68814480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	65	50	22	0.44	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon40:c.A5712G:p.Q1904Q	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	2	1	1	0.9961324	AAA	synonymous	NA	NA	NA	NA
M3	chr11	69355376	12A2p6	cell line	sgMsh2	69355376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	42	156	36	0.230769231	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon20:c.T3371C:p.L1124P	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9678432	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	69478799	12A2p6	cell line	sgMsh2	69478799	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	93	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon30:c.A4850C:p.E1617A	11qB3	chr11-3133205-69579350	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	8.46E-08	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	69736805	12A2p6	cell line	sgMsh2	69736805	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	59	219	65	0.296803653	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon25:c.A4275G:p.G1425G	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9944444	GTC	synonymous	NA	NA	NA	NA
M3	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	58	148	24	0.162162162	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9940991	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	69795867	12A2p6	cell line	sgMsh2	69795867	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	73	58	12	0.206896552	exonic	Chrnb1	frameshift deletion	Chrnb1:NM_009601:exon1:c.13delG:p.A5Rfs*5	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr11	69804443	12A2p6	cell line	sgMsh2	69804443	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.273	200	9	2	0.222222222	exonic	Tmem102	synonymous SNV	Tmem102:NM_001033433:exon2:c.G702A:p.L234L	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9999989	CCA	synonymous	NA	NA	NA	NA
M3	chr11	69804445	12A2p6	cell line	sgMsh2	69804445	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.273	200	11	2	0.181818182	exonic	Tmem102	nonsynonymous SNV	Tmem102:NM_001033433:exon2:c.T700A:p.L234M	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9999989	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	69848314	12A2p6	cell line	sgMsh2	69848314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	132	166	27	0.162650602	exonic	Plscr3	nonsynonymous SNV	"Plscr3:NM_001168497:exon6:c.C611T:p.P204L,Plscr3:NM_023564:exon6:c.C611T:p.P204L"	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.989219195	1	0.9998963	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr11	69909053	12A2p6	cell line	sgMsh2	69909053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	111	56	19	0.339285714	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon18:c.T3090C:p.D1030D,Neurl4:NM_001013414:exon19:c.T3162C:p.D1054D,Neurl4:NM_001291118:exon19:c.T3156C:p.D1052D"	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9997615	ATG	synonymous	NA	NA	NA	NA
M3	chr11	70030599	12A2p6	cell line	sgMsh2	70030599	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	82	39	1	0.025641026	exonic	Dlg4	stopgain	Dlg4:NM_007864:exon4:c.T155A:p.L52X	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.895007843	1	0.980534	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	70607790	12A2p6	cell line	sgMsh2	70607790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	31	67	14	0.208955224	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_001045959:exon16:c.T1780C:p.Y594H,Mink1:NM_001045964:exon16:c.T1780C:p.Y594H,Mink1:NM_016713:exon16:c.T1780C:p.Y594H,Mink1:NM_176893:exon16:c.T1780C:p.Y594H"	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9703799	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr11	70641197	12A2p6	cell line	sgMsh2	70641197	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	183	0	0	NA	exonic	Gp1ba	synonymous SNV	Gp1ba:NM_010326:exon2:c.T1788G:p.T596T	11qB3	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.903572512	1	0.99929	CTT	synonymous	NA	NA	NA	NA
M3	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	94	2	1	0.5	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9993316	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr11	72550138	12A2p6	cell line	sgMsh2	72550138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	65	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon1:c.A71G:p.Y24C	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9961324	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr11	73048053	12A2p6	cell line	sgMsh2	73048053	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	27	61	8	0.131147541	exonic	Ncbp3	nonsynonymous SNV	Ncbp3:NM_025818:exon1:c.G154A:p.V52M	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9625481	GGT	nonsynonymous	NA	NA	NA	NA
M3	chr11	73217842	12A2p6	cell line	sgMsh2	73217842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	44	5	1	0.2	exonic	Shpk	synonymous SNV	Shpk:NM_029031:exon6:c.T861C:p.P287P	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9863153	CTG	synonymous	NA	NA	NA	NA
M3	chr11	73711263	12A2p6	cell line	sgMsh2	73711263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	exonic	Zfp735	synonymous SNV	Zfp735:NM_001126489:exon4:c.T1032C:p.H344H	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.710867474	2	0.9762245	ATA	synonymous	NA	NA	NA	NA
M3	chr11	73787214	12A2p6	cell line	sgMsh2	73787214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	284	0	0	NA	exonic	Olfr390	nonsynonymous SNV	Olfr390:NM_146347:exon1:c.T275C:p.I92T	11qB4	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.873596172	1	0.9995605	ATC	nonsynonymous	CATC	9	CATCCATCC	NA
M3	chr11	75167229	12A2p6	cell line	sgMsh2	75167229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	14	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T353C:p.V118A,Hic1:NM_010430:exon2:c.T833C:p.V278A"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9208679	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	75451303	12A2p6	cell line	sgMsh2	75451303	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	31	34	7	0.205882353	exonic	Wdr81	nonsynonymous SNV	Wdr81:NM_138950:exon1:c.T3137A:p.I1046N	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.916419514	1	0.9362959	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	133	150	26	0.173333333	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9999372	CAC	synonymous	NA	NA	NA	NA
M3	chr11	75671245	12A2p6	cell line	sgMsh2	75671245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	85	175	40	0.228571429	exonic	Myo1c	nonsynonymous SNV	"Myo1c:NM_001080774:exon26:c.A2558G:p.Y853C,Myo1c:NM_001080775:exon26:c.A2606G:p.Y869C,Myo1c:NM_001370611:exon26:c.A2663G:p.Y888C,Myo1c:NM_008659:exon26:c.A2558G:p.Y853C"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9988469	TAC	nonsynonymous	C	5	CCCCC	NA
M3	chr11	76797605	12A2p6	cell line	sgMsh2	76797605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	152	140	29	0.207142857	exonic	Cpd	nonsynonymous SNV	Cpd:NM_007754:exon12:c.A2840G:p.Y947C	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.869313838	1	0.9908384	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr11	76949975	12A2p6	cell line	sgMsh2	76949975	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	122	66	15	0.227272727	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon3:c.T227G:p.F76C	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9998776	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	77078398	12A2p6	cell line	sgMsh2	77078398	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	65	55	26	0.472727273	exonic	Nsrp1	nonsynonymous SNV	Nsrp1:NM_001012309:exon1:c.A1C:p.M1L	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.890725509	1	0.9662493	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr11	77824228	12A2p6	cell line	sgMsh2	77824228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	33	149	37	0.248322148	exonic	Myo18a	synonymous SNV	"Myo18a:NM_001291214:exon12:c.G1443A:p.R481R,Myo18a:NM_011586:exon13:c.G2448A:p.R816R,Myo18a:NM_001291212:exon14:c.G2484A:p.R828R,Myo18a:NM_001291213:exon14:c.G2592A:p.R864R,Myo18a:NM_001291215:exon15:c.G1509A:p.R503R"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.973675	GGC	synonymous	NA	NA	NA	NA
M3	chr11	77846442	12A2p6	cell line	sgMsh2	77846442	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	262	57	0.217557252	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon29:c.A3764C:p.D1255A,Myo18a:NM_011586:exon30:c.A4769C:p.D1590A,Myo18a:NM_001291212:exon31:c.A4805C:p.D1602A,Myo18a:NM_001291213:exon31:c.A4913C:p.D1638A,Myo18a:NM_001291215:exon32:c.A3830C:p.D1277A"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9924912	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	78219960	12A2p6	cell line	sgMsh2	78219960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	92	147	46	0.31292517	exonic	Supt6	nonsynonymous SNV	Supt6:NM_009297:exon25:c.C3265A:p.L1089I	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.783667155	1	0.7375002	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	54	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.723714476	1	0.566948	CTG	synonymous	NA	NA	NA	NA
M3	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	71	74	17	0.22972973	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9973089	CTA	synonymous	NA	NA	NA	NA
M3	chr11	80242112	12A2p6	cell line	sgMsh2	80242112	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	135	125	20	0.16	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon8:c.T251G:p.F84C,Rhot1:NM_001163354:exon9:c.T671G:p.F224C,Rhot1:NM_001163355:exon9:c.T671G:p.F224C,Rhot1:NM_001362868:exon9:c.T671G:p.F224C,Rhot1:NM_021536:exon9:c.T671G:p.F224C,Rhot1:NM_001362869:exon10:c.T410G:p.F137C"	11qB5	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.959242856	1	0.9996949	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	82722463	12A2p6	cell line	sgMsh2	82722463	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	99	0	0	NA	exonic	Cct6b	synonymous SNV	"Cct6b:NM_001291242:exon12:c.T1251G:p.G417G,Cct6b:NM_009839:exon12:c.T1368G:p.G456G"	11qC	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9995063	AAC	synonymous	NA	NA	NA	NA
M3	chr11	82789697	12A2p6	cell line	sgMsh2	82789697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	83	27	0	0	exonic	Lig3	stopgain	"Lig3:NM_001291245:exon6:c.C1198T:p.Q400X,Lig3:NM_001291246:exon6:c.C1195T:p.Q399X,Lig3:NM_001291247:exon6:c.C1195T:p.Q399X,Lig3:NM_010716:exon6:c.C1198T:p.Q400X"	11qC	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	1	1	0.9986984	GCA	nonsynonymous	NA	NA	NA	NA
M3	chr11	82898806	12A2p6	cell line	sgMsh2	82898806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	59	0	0	NA	exonic	Fndc8	synonymous SNV	Fndc8:NM_030224:exon3:c.A789T:p.V263V	11qC	chr11-69590981-82929860	4	4	0	0.96	4.111040811	NA	1	0.959242856	1	0.9883834	TAG	synonymous	NA	NA	NA	NA
M3	chr11	83753866	12A2p6	cell line	sgMsh2	83753866	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	27	16	2	0.125	exonic	Heatr6	synonymous SNV	Heatr6:NM_145432:exon1:c.C144T:p.S48S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9445106	CCC	synonymous	NA	NA	NA	NA
M3	chr11	84522199	12A2p6	cell line	sgMsh2	84522199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	78	0	0	NA	exonic	Lhx1	nonsynonymous SNV	Lhx1:NM_008498:exon2:c.A260G:p.N87S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9287099	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	84878147	12A2p6	cell line	sgMsh2	84878147	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	150	37	10	0.27027027	exonic	Pigw	frameshift deletion	"Pigw:NM_001077636:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_001363112:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_027388:exon2:c.355delA:p.I119Sfs*2"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.800796491	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	118	96	32	0.333333333	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9551336	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	84	165	42	0.254545455	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	87433817	12A2p6	cell line	sgMsh2	87433817	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	46	0	0	NA	exonic	Tex14	frameshift deletion	"Tex14:NM_001199293:exon2:c.44delG:p.A17Lfs*32,Tex14:NM_031386:exon2:c.8delG:p.A5Lfs*32"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3	chr11	87542566	12A2p6	cell line	sgMsh2	87542566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	153	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon26:c.G4002A:p.K1334K,Tex14:NM_031386:exon26:c.G3966A:p.K1322K"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9703414	AGG	synonymous	NA	NA	NA	NA
M3	chr11	87567526	12A2p6	cell line	sgMsh2	87567526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	145	0	0	NA	exonic	Septin4	nonsynonymous SNV	Septin4:NM_001368775:exon1:c.T725G:p.I242S	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999697	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr11	87730197	12A2p6	cell line	sgMsh2	87730197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	91	16	0	0	exonic	Rnf43	synonymous SNV	"Rnf43:NM_001363437:exon7:c.G534A:p.Q178Q,Rnf43:NM_172448:exon8:c.G915A:p.Q305Q"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	AGC	synonymous	NA	NA	NA	NA
M3	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	34	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9751858	GGA	nonsynonymous	NA	NA	NA	NA
M3	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	168	16	5	0.3125	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999925	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr11	89440739	12A2p6	cell line	sgMsh2	89440739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	94	0	0	NA	exonic	Ankfn1	synonymous SNV	Ankfn1:NM_001327810:exon13:c.A1566G:p.T522T	11qC	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	CTG	synonymous	AGCTG	10	AGCTGAGCTG	NA
M3	chr11	93876127	12A2p6	cell line	sgMsh2	93876127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	118	73	14	0.191780822	exonic	Utp18	synonymous SNV	Utp18:NM_001013375:exon6:c.G753A:p.S251S	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.9301698	ACG	synonymous	NA	NA	NA	NA
M3	chr11	94334532	12A2p6	cell line	sgMsh2	94334532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	78	156	49	0.314102564	exonic	Ankrd40	nonsynonymous SNV	"Ankrd40:NM_027799:exon3:c.A388G:p.T130A,Ankrd40:NM_146024:exon3:c.A388G:p.T130A"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	94427459	12A2p6	cell line	sgMsh2	94427459	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	93	14	4	0.285714286	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.C4278A:p.N1426K,Cacna1g:NM_001177888:exon22:c.C4278A:p.N1426K,Cacna1g:NM_001177890:exon22:c.C4227A:p.N1409K,Cacna1g:NM_009783:exon23:c.C4347A:p.N1449K"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr11	94465827	12A2p6	cell line	sgMsh2	94465827	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	66	9	1	0.111111111	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon3:c.T482A:p.I161N,Cacna1g:NM_001177888:exon3:c.T482A:p.I161N,Cacna1g:NM_001177890:exon3:c.T482A:p.I161N,Cacna1g:NM_009783:exon3:c.T482A:p.I161N"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	68	16	2	0.125	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9967736	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	93	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	96099965	12A2p6	cell line	sgMsh2	96099965	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	91	0	0	NA	exonic	Calcoco2	nonsynonymous SNV	Calcoco2:NM_001271018:exon6:c.G945T:p.K315N	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr11	97022316	12A2p6	cell line	sgMsh2	97022316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	81	0	0	NA	exonic	Sp6	nonsynonymous SNV	"Sp6:NM_001363230:exon2:c.T854C:p.V285A,Sp6:NM_031183:exon2:c.T854C:p.V285A"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	97181660	12A2p6	cell line	sgMsh2	97181660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	184	469	107	0.228144989	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon4:c.A448G:p.T150A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999972	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	98152821	12A2p6	cell line	sgMsh2	98152821	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.442	28	43	11	0.255813953	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M3	chr11	98250323	12A2p6	cell line	sgMsh2	98250323	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.3	41	28	8	0.285714286	exonic	Cdk12	frameshift deletion	"Cdk12:NM_001109626:exon14:c.4389delA:p.K1464Nfs*39,Cdk12:NM_001109628:exon14:c.4362delA:p.K1455Nfs*39"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr11	98420941	12A2p6	cell line	sgMsh2	98420941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	79	73	13	0.178082192	exonic	Erbb2	nonsynonymous SNV	Erbb2:NM_001003817:exon3:c.T302G:p.I101S	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr11	98423069	12A2p6	cell line	sgMsh2	98423069	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	61	70	14	0.2	exonic	Erbb2	synonymous SNV	Erbb2:NM_001003817:exon7:c.C837A:p.T279T	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	CCT	synonymous	NA	NA	NA	NA
M3	chr11	98488928	12A2p6	cell line	sgMsh2	98488928	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	81	0	0	NA	exonic	Ikzf3	frameshift deletion	Ikzf3:NM_011771:exon5:c.513delA:p.K171Nfs*87	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	116	64	13	0.203125	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	AAG	synonymous	NA	NA	NA	NA
M3	chr11	98917008	12A2p6	cell line	sgMsh2	98917008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	203	14	2	0.142857143	exonic	Cdc6	synonymous SNV	"Cdc6:NM_001025779:exon9:c.A1245G:p.P415P,Cdc6:NM_001362735:exon9:c.A1242G:p.P414P,Cdc6:NM_011799:exon9:c.A1326G:p.P442P"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999991	CAC	synonymous	NA	NA	NA	NA
M3	chr11	99780487	12A2p6	cell line	sgMsh2	99780487	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.222	196	0	0	NA	exonic	Krtap4-8	nonsynonymous SNV	Krtap4-8:NM_001085547:exon1:c.G157A:p.V53M	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9999726	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr11	99873936	12A2p6	cell line	sgMsh2	99873936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	86	0	0	NA	exonic	Krtap9-1	nonsynonymous SNV	Krtap9-1:NM_015741:exon1:c.T497C:p.V166A	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9660619	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	100413732	12A2p6	cell line	sgMsh2	100413732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	58	151	50	0.331125828	exonic	P3h4	nonsynonymous SNV	"P3h4:NM_001378981:exon3:c.A682G:p.S228G,P3h4:NM_176830:exon3:c.A682G:p.S228G"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9741034	CTG	nonsynonymous	TGC	9	TGCTGCTGC	NA
M3	chr11	100741796	12A2p6	cell line	sgMsh2	100741796	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	63	0	0	NA	exonic	Kcnh4	nonsynonymous SNV	Kcnh4:NM_001081194:exon16:c.C2864A:p.A955D	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9903947	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr11	101165151	12A2p6	cell line	sgMsh2	101165151	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	62	33	8	0.242424242	exonic	Plekhh3	synonymous SNV	"Plekhh3:NM_001346769:exon9:c.C1321A:p.R441R,Plekhh3:NM_146030:exon9:c.C1321A:p.R441R"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9953642	CGG	synonymous	NA	NA	NA	NA
M3	chr11	101317339	12A2p6	cell line	sgMsh2	101317339	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	237	378	82	0.216931217	exonic	Psme3	nonsynonymous SNV	Psme3:NM_011192:exon3:c.T86G:p.L29W	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.999992	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	69	184	52	0.282608696	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.745126147	1	0.5877243	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	102268883	12A2p6	cell line	sgMsh2	102268883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	21	0	0	NA	exonic	Asb16	stopgain	Asb16:NM_148953:exon1:c.G61T:p.E21X	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9469504	AGA	nonsynonymous	AG	8	AGAGAGAG	NA
M3	chr11	102353203	12A2p6	cell line	sgMsh2	102353203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	49	0	0	NA	exonic	Slc4a1	nonsynonymous SNV	Slc4a1:NM_011403:exon16:c.C2099T:p.S700F	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	9.56E-06	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr11	102435407	12A2p6	cell line	sgMsh2	102435407	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	86	499	123	0.246492986	exonic	Grn	synonymous SNV	Grn:NM_008175:exon10:c.T1089G:p.P363P	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	CTT	synonymous	NA	NA	NA	NA
M3	chr11	102435775	12A2p6	cell line	sgMsh2	102435775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	55	322	78	0.242236025	exonic	Grn	nonsynonymous SNV	Grn:NM_008175:exon11:c.T1240C:p.C414R	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	102466479	12A2p6	cell line	sgMsh2	102466479	A	-	Deletion	Strelka2;Vardict	2	0.2812	32	0	0	NA	exonic	Itga2b	stopgain	Itga2b:NM_010575:exon6:c.665delT:p.L222fs*0	11qD	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M3	chr11	102884054	12A2p6	cell line	sgMsh2	102884054	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.219	63	3	2	0.666666667	exonic	Ccdc103	nonsynonymous SNV	"Ccdc103:NM_001364757:exon5:c.C274T:p.R92W,Ccdc103:NM_028492:exon5:c.C478T:p.R160W"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.985494	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr11	102886351	12A2p6	cell line	sgMsh2	102886351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	155	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.A980G:p.H327R	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	103239771	12A2p6	cell line	sgMsh2	103239772	CA	-	Deletion	Strelka2;Vardict	2	0.246	126	13	5	0.384615385	exonic	Map3k14	frameshift deletion	Map3k14:NM_016896:exon4:c.397_398del:p.C133Pfs*13	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GCA	frameshift	NA	NA	NA	-2
M3	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	51	12	4	0.333333333	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	GTC	synonymous	NA	NA	NA	NA
M3	chr11	106320885	12A2p6	cell line	sgMsh2	106320885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	71	0	0	NA	exonic	Scn4a	synonymous SNV	Scn4a:NM_133199:exon24:c.T4305C:p.F1435F	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.560985777	2	0.9671648	CAA	synonymous	NA	NA	NA	NA
M3	chr11	107073916	12A2p6	cell line	sgMsh2	107073916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	257	172	38	0.220930233	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon11:c.A4106G:p.N1369S,Bptf:NM_176850:exon11:c.A4106G:p.N1369S"	11qE1	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	113624809	12A2p6	cell line	sgMsh2	113624809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	105	1	0	0	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.A553G:p.S185G,Sstr2:NM_009217:exon2:c.A553G:p.S185G"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr11	115250142	12A2p6	cell line	sgMsh2	115250142	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.444	16	0	0	NA	exonic	Grin2c	frameshift deletion	Grin2c:NM_010350:exon15:c.3149delC:p.P1050Rfs*150	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3	chr11	115250473	12A2p6	cell line	sgMsh2	115250473	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.383	8	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon15:c.T2818C:p.C940R	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	1	0.8887944	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	115822071	12A2p6	cell line	sgMsh2	115822071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	78	37	5	0.135135135	exonic	Tsen54	frameshift deletion	Tsen54:NM_029557:exon10:c.1383delA:p.N463Tfs*27	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.96352519	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	64	30	8	0.266666667	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7700156	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr11	116023510	12A2p6	cell line	sgMsh2	116023510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	112	1097	263	0.239744758	exonic	H3f3b	nonsynonymous SNV	H3f3b:NM_008211:exon4:c.G308T:p.G103V	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997755	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr11	116221959	12A2p6	cell line	sgMsh2	116221959	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	53	16	2	0.125	exonic	Evpl	nonsynonymous SNV	Evpl:NM_025276:exon22:c.G4904A:p.R1635Q	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr11	116607343	12A2p6	cell line	sgMsh2	116607343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	42	17	2	0.117647059	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon3:c.A29G:p.N10S,Rhbdf2:NM_172572:exon3:c.A29G:p.N10S"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.966066	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	58	18	6	0.333333333	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.8140328	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr11	118066351	12A2p6	cell line	sgMsh2	118066351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	69	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon54:c.A8399G:p.Y2800C	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr11	119351006	12A2p6	cell line	sgMsh2	119351006	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	79	0	0	NA	exonic	Sgsh	synonymous SNV	Sgsh:NM_018822:exon3:c.G273A:p.L91L	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	GCA	synonymous	NA	NA	NA	NA
M3	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	44	12	3	0.25	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.38969241	2	0.6011276	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	119440808	12A2p6	cell line	sgMsh2	119440808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	200	18	4	0.222222222	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon29:c.A6845G:p.H2282R	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999989	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr11	119499548	12A2p6	cell line	sgMsh2	119499548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	35	18	2	0.111111111	exonic	Endov	nonsynonymous SNV	"Endov:NM_177394:exon2:c.A1G:p.M1V,Endov:NM_001164636:exon3:c.A250G:p.M84V"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9363095	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	27	29	7	0.24137931	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9625481	CAG	synonymous	NA	NA	NA	NA
M3	chr11	120011210	12A2p6	cell line	sgMsh2	120011210	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.215	42	0	0	NA	exonic	Aatk	nonsynonymous SNV	"Aatk:NM_001377503:exon8:c.G1828T:p.G610C,Aatk:NM_001198785:exon11:c.G2359T:p.G787C,Aatk:NM_001198787:exon11:c.G2188T:p.G730C,Aatk:NM_007377:exon11:c.G2188T:p.G730C"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9579645	CCC	nonsynonymous	CCCA	9	CCCACCCAC	NA
M3	chr11	120105448	12A2p6	cell line	sgMsh2	120105448	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	117	59	13	0.220338983	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001164799:exon16:c.A2798T:p.E933V,Slc38a10:NM_001164800:exon16:c.A2795T:p.E932V,Slc38a10:NM_001361697:exon16:c.A2573T:p.E858V,Slc38a10:NM_001361698:exon16:c.A2558T:p.E853V,Slc38a10:NM_001164798:exon17:c.A2819T:p.E940V,Slc38a10:NM_001361696:exon17:c.A2816T:p.E939V,Slc38a10:NM_001361699:exon17:c.A2147T:p.E716V,Slc38a10:NM_024249:exon17:c.A2822T:p.E941V"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr11	120284409	12A2p6	cell line	sgMsh2	120284409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	41	31	9	0.290322581	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon18:c.C5308T:p.R1770C	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9564855	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	50	23	6	0.260869565	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9737616	TAC	nonsynonymous	C	5	CCCCC	NA
M3	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	102	1813	451	0.248758963	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.637628	CTG	synonymous	NA	NA	NA	NA
M3	chr11	120377089	12A2p6	cell line	sgMsh2	120377089	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	37	13	0	0	exonic	Faap100	stopgain	Faap100:NM_027980:exon3:c.857delT:p.L286fs*0	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
M3	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	50	165	40	0.242424242	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9904495	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr11	120595036	12A2p6	cell line	sgMsh2	120595036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.273	105	326	81	0.248466258	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon5:c.A697G:p.K233E	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	TTT	nonsynonymous	GCT	9	GCTGCTGCT	NA
M3	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	76	12	8	0.666666667	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9957713	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr11	121448988	12A2p6	cell line	sgMsh2	121448988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	108	0	0	NA	exonic	Fn3k	nonsynonymous SNV	Fn3k:NM_022014:exon5:c.T575C:p.L192P	11qE2	chr11-83350706-121956668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997139	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr12	3501299	12A2p6	cell line	sgMsh2	3501299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	188	54	7	0.12962963	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3040G:p.R1014G,Asxl2:NM_001270988:exon12:c.A3184G:p.R1062G"	12qA1.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	3591924	12A2p6	cell line	sgMsh2	3591924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	263	43	9	0.209302326	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001162465:exon3:c.T86C:p.V29A,Dtnb:NM_001355528:exon3:c.T86C:p.V29A,Dtnb:NM_001374710:exon3:c.T86C:p.V29A,Dtnb:NM_007886:exon3:c.T86C:p.V29A"	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.822208162	1	0.9567607	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr12	3971047	12A2p6	cell line	sgMsh2	3971047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	99	0	0	NA	exonic	Efr3b	synonymous SNV	Efr3b:NM_001082483:exon19:c.A2071C:p.R691R	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.6766088	2	0.0920446	CTC	synonymous	NA	NA	NA	NA
M3	chr12	4974217	12A2p6	cell line	sgMsh2	4974217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	144	37	8	0.216216216	exonic	Atad2b	nonsynonymous SNV	Atad2b:NM_001362349:exon16:c.T2066C:p.I689T	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.907854846	1	0.9980505	ATC	nonsynonymous	CAA	8	CAACAACA	NA
M3	chr12	5091439	12A2p6	cell line	sgMsh2	5091439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	103	0	0	NA	exonic	Klhl29	nonsynonymous SNV	Klhl29:NM_001164493:exon9:c.A1544G:p.Y515C	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.839337499	1	0.9392076	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr12	12937326	12A2p6	cell line	sgMsh2	12937326	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	117	8	0	0	exonic	Mycn	frameshift deletion	Mycn:NM_008709:exon3:c.1069delC:p.L357Sfs*11	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.432515752	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr12	13390999	12A2p6	cell line	sgMsh2	13390999	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	87	20	0	0	exonic	Nbas	frameshift deletion	Nbas:NM_027706:exon29:c.3329delC:p.T1110Sfs*30	12qA1.1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.668044132	NA	NA	ACG	frameshift	NA	NA	NA	-1
M3	chr12	21290291	12A2p6	cell line	sgMsh2	21290291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	173	132	23	0.174242424	exonic	Cpsf3	nonsynonymous SNV	"Cpsf3:NM_001364373:exon2:c.T94C:p.F32L,Cpsf3:NM_018813:exon2:c.T94C:p.F32L"	12qA1.3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.822208162	1	0.9300716	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	24096961	12A2p6	cell line	sgMsh2	24096961	T	C	SNV	Mutect2;MuSe;Vardict	3	0.143	66	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	"9030624G23Rik:NM_001256489:exon1:c.A8G:p.D3G,9030624G23Rik:NM_001382819:exon1:c.A8G:p.D3G"	12qA1.3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.612373788	2	0.09084916	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr12	26477064	12A2p6	cell line	sgMsh2	26477064	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	46	0	0	NA	exonic	Cmpk2	nonsynonymous SNV	Cmpk2:NM_020557:exon4:c.T1051C:p.Y351H	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.483903762	2	0.09060462	GTA	nonsynonymous	TACC	8	TACCTACC	NA
M3	chr12	28737836	12A2p6	cell line	sgMsh2	28737836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	97	77	18	0.233766234	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon3:c.A1247G:p.K416R,Trappc12:NM_001161411:exon3:c.A1247G:p.K416R,Trappc12:NM_001377005:exon3:c.A1247G:p.K416R,Trappc12:NM_001377006:exon3:c.A1247G:p.K416R,Trappc12:NM_001377007:exon3:c.A1247G:p.K416R,Trappc12:NM_178811:exon3:c.A1247G:p.K416R"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.856466836	1	0.9602942	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	28746826	12A2p6	cell line	sgMsh2	28746826	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	160	102	18	0.176470588	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon2:c.A706G:p.S236G,Trappc12:NM_001161411:exon2:c.A706G:p.S236G,Trappc12:NM_001377005:exon2:c.A706G:p.S236G,Trappc12:NM_001377006:exon2:c.A706G:p.S236G,Trappc12:NM_001377007:exon2:c.A706G:p.S236G,Trappc12:NM_178811:exon2:c.A706G:p.S236G"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.663761798	2	0.9951625	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr12	28863069	12A2p6	cell line	sgMsh2	28863069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	150	53	14	0.264150943	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.G468T:p.W156C,Eipr1:NM_201357:exon7:c.G768T:p.W256C,Eipr1:NM_001379229:exon8:c.G468T:p.W156C"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.595244451	2	0.9996079	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr12	29827788	12A2p6	cell line	sgMsh2	29827788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	133	0	0	NA	exonic	Myt1l	nonsynonymous SNV	"Myt1l:NM_001361658:exon9:c.A1374C:p.R458S,Myt1l:NM_001361660:exon9:c.A1374C:p.R458S,Myt1l:NM_001093775:exon10:c.A1437C:p.R479S,Myt1l:NM_001093776:exon10:c.A1437C:p.R479S,Myt1l:NM_001093778:exon10:c.A1434C:p.R478S,Myt1l:NM_001361655:exon10:c.A1437C:p.R479S,Myt1l:NM_001361656:exon10:c.A1437C:p.R479S,Myt1l:NM_001361657:exon10:c.A1437C:p.R479S,Myt1l:NM_001361659:exon10:c.A1437C:p.R479S,Myt1l:NM_008666:exon10:c.A1437C:p.R479S"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.608091453	2	0.9983316	GAA	nonsynonymous	AAATCC	13	AAATCCAAATCCA	NA
M3	chr12	30226882	12A2p6	cell line	sgMsh2	30226882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	125	0	0	NA	exonic	Sntg2	synonymous SNV	"Sntg2:NM_001324521:exon13:c.C471T:p.S157S,Sntg2:NM_001324519:exon14:c.C993T:p.S331S,Sntg2:NM_001324520:exon14:c.C975T:p.S325S,Sntg2:NM_172951:exon14:c.C1170T:p.S390S"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.762255484	2	0.5003763	CGC	synonymous	NA	NA	NA	NA
M3	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	183	255	2	0.007843137	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.603809119	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr12	31490488	12A2p6	cell line	sgMsh2	31490488	T	-	Deletion	Strelka2;Vardict	2	0.1631	233	80	19	0.2375	exonic	Cbll1	frameshift deletion	"Cbll1:NM_001253847:exon5:c.420delA:p.G141Efs*50,Cbll1:NM_001253848:exon5:c.408delA:p.G137Efs*50,Cbll1:NM_134048:exon5:c.417delA:p.G140Efs*50"	12qA2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.698448704	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr12	32850497	12A2p6	cell line	sgMsh2	32850497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	259	272	38	0.139705882	exonic	Nampt	synonymous SNV	Nampt:NM_021524:exon11:c.A1440G:p.A480A	12qA3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.372563074	3	0.9999782	CAC	synonymous	NA	NA	NA	NA
M3	chr12	36314357	12A2p6	cell line	sgMsh2	36314357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	137	0	0	NA	exonic	Sostdc1	synonymous SNV	Sostdc1:NM_025312:exon1:c.T64C:p.L22L	12qA3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.689455803	2	0.962342	TTT	synonymous	NA	NA	NA	NA
M3	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	185	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.586679782	2	0.9999494	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr12	38438687	12A2p6	cell line	sgMsh2	38438687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	80	0	0	NA	exonic	Dgkb	nonsynonymous SNV	"Dgkb:NM_001361688:exon22:c.A2051G:p.K684R,Dgkb:NM_178681:exon22:c.A2051G:p.K684R,Dgkb:NM_001361686:exon23:c.A2072G:p.K691R"	12qA3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.488186096	2	0.9115612	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr12	38630684	12A2p6	cell line	sgMsh2	38630684	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	129	0	0	NA	exonic	Dgkb	frameshift deletion	"Dgkb:NM_001361688:exon25:c.2382delG:p.E795delinsSEPPSGEI,Dgkb:NM_178681:exon25:c.2382delG:p.E795delinsSEPPSGEI,Dgkb:NM_001361686:exon26:c.2403delG:p.E802delinsSEPPSGEI"	12qA3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.560985777	NA	NA	AGG	frameshift	NA	NA	NA	-1
M3	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	154	2	0	0	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.770820152	1	0.5081773	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr12	44571709	12A2p6	cell line	sgMsh2	44571709	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	132	2	0	0	exonic	Nrcam	synonymous SNV	"Nrcam:NM_001146031:exon21:c.A2451C:p.P817P,Nrcam:NM_176930:exon22:c.A2481C:p.P827P"	12qB2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.57383278	2	0.9989347	CAG	synonymous	NA	NA	NA	NA
M3	chr12	44590222	12A2p6	cell line	sgMsh2	44590222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	148	0	0	NA	exonic	Nrcam	nonsynonymous SNV	"Nrcam:NM_001146031:exon26:c.A3227G:p.K1076R,Nrcam:NM_176930:exon29:c.A3437G:p.K1146R"	12qB2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	2	0.7821109	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr12	51371627	12A2p6	cell line	sgMsh2	51371627	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	149	40	8	0.2	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001167964:exon13:c.A1453C:p.K485Q,G2e3:NM_001015099:exon14:c.A1735C:p.K579Q,G2e3:NM_001167963:exon15:c.A1804C:p.K602Q"	12qB3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.839337499	1	0.9623642	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr12	51774736	12A2p6	cell line	sgMsh2	51774736	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	155	312	68	0.217948718	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon21:c.T3169G:p.L1057V	12qB3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.672326466	2	0.9909797	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	165	221	24	0.108597285	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.565268112	2	0.9996291	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M3	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	64	83	18	0.21686747	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.843619833	1	0.9164562	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	52567084	12A2p6	cell line	sgMsh2	52567084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	201	378	35	0.092592593	exonic	Arhgap5	nonsynonymous SNV	Arhgap5:NM_009706:exon6:c.A4258G:p.R1420G	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.590962117	2	0.9999807	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	54069070	12A2p6	cell line	sgMsh2	54069070	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	124	0	0	NA	exonic	Npas3	nonsynonymous SNV	"Npas3:NM_001370960:exon11:c.A2768C:p.D923A,Npas3:NM_001370963:exon11:c.A2771C:p.D924A,Npas3:NM_001370961:exon12:c.A2867C:p.D956A,Npas3:NM_001370962:exon12:c.A2852C:p.D951A,Npas3:NM_013780:exon12:c.A2861C:p.D954A,Npas3:NM_001370964:exon13:c.A2906C:p.D969A"	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.445362755	2	0.5094745	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	54656435	12A2p6	cell line	sgMsh2	54656435	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.173	23	126	23	0.182539683	exonic	Sptssa	nonsynonymous SNV	Sptssa:NM_134054:exon1:c.T49C:p.Y17H	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.740843813	1	0.7600787	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	154	219	75	0.342465753	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M3	chr12	55490467	12A2p6	cell line	sgMsh2	55490467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	84	153	25	0.163398693	exonic	Nfkbia	nonsynonymous SNV	Nfkbia:NM_010907:exon5:c.T836C:p.M279T	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.6766088	2	0.8452415	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr12	56718313	12A2p6	cell line	sgMsh2	56718313	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	3	3	1	exonic	Slc25a21	synonymous SNV	"Slc25a21:NM_172577:exon8:c.C609A:p.T203T,Slc25a21:NM_001167976:exon9:c.C630A:p.T210T"	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	2	1	1	0.9974668	AGG	synonymous	NA	NA	NA	NA
M3	chr12	57457009	12A2p6	cell line	sgMsh2	57457009	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	123	42	3	0.071428571	exonic	Mipol1	nonsynonymous SNV	Mipol1:NM_001164370:exon10:c.T962G:p.L321R	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.6766088	2	0.9620879	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	58268262	12A2p6	cell line	sgMsh2	58268262	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	94	0	0	NA	exonic	Clec14a	nonsynonymous SNV	Clec14a:NM_025809:exon1:c.T573G:p.S191R	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.663761798	2	0.9216316	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	59072628	12A2p6	cell line	sgMsh2	59072628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	69	191	28	0.146596859	exonic	Pnn	nonsynonymous SNV	Pnn:NM_008891:exon9:c.A1996G:p.T666A	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.702302805	2	9.23E-05	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	116	118	14	0.118644068	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.715149808	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3	chr12	65161578	12A2p6	cell line	sgMsh2	65161578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	221	41	3	0.073170732	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon2:c.A360C:p.K120N	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.535291772	2	0.9990685	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	65226601	12A2p6	cell line	sgMsh2	65226601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	286	0	0	NA	exonic	Wdr20rt	synonymous SNV	Wdr20rt:NM_027614:exon1:c.A837G:p.G279G	12qC1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.702302805	2	0.9993765	GAG	synonymous	NA	NA	NA	NA
M3	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	124	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.560985777	2	0.9977819	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	115	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	2	1	1	0.9998129	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr12	69307199	12A2p6	cell line	sgMsh2	69307199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	532	64	0.120300752	exonic	Klhdc2	synonymous SNV	Klhdc2:NM_027117:exon9:c.A783G:p.Q261Q	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.719432142	2	0.7469081	AAG	synonymous	NA	NA	NA	NA
M3	chr12	69607335	12A2p6	cell line	sgMsh2	69607335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	163	102	15	0.147058824	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon14:c.A2239G:p.S747G	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.578115114	2	0.9997957	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	69740987	12A2p6	cell line	sgMsh2	69740987	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	116	34	9	0.264705882	exonic	Dmac2l	nonsynonymous SNV	"Dmac2l:NM_001361691:exon3:c.G196T:p.G66C,Dmac2l:NM_026536:exon3:c.G196T:p.G66C,Dmac2l:NM_001361690:exon4:c.G196T:p.G66C"	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.745126147	2	0.6224774	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr12	69818044	12A2p6	cell line	sgMsh2	69818044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	313	151	27	0.178807947	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1863C:p.K621N	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.608091453	2	7.05E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	70897432	12A2p6	cell line	sgMsh2	70897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	199	31	8	0.258064516	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon13:c.A1583G:p.Q528R	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.693738137	2	0.9943602	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	71086518	12A2p6	cell line	sgMsh2	71086518	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	72	59	6	0.101694915	exonic	Arid4a	nonsynonymous SNV	Arid4a:NM_001081195:exon22:c.A3392G:p.K1131R	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.44108042	2	0.7021931	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	71187420	12A2p6	cell line	sgMsh2	71187420	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	121	17	0	0	exonic	2700049A03Rik	frameshift deletion	"2700049A03Rik:NM_001163378:exon22:c.3193delC:p.C1067Afs*5,2700049A03Rik:NM_029818:exon22:c.3193delC:p.C1067Afs*5"	12qC2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.732279145	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3	chr12	71975237	12A2p6	cell line	sgMsh2	71975237	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	145	65	10	0.153846154	exonic	Daam1	nonsynonymous SNV	"Daam1:NM_001286452:exon18:c.A2208C:p.E736D,Daam1:NM_026102:exon19:c.A2235C:p.E745D,Daam1:NM_172464:exon19:c.A2235C:p.E745D"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.642350127	2	0.9964426	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	72304133	12A2p6	cell line	sgMsh2	72304133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	43	0	0	NA	exonic	Rtn1	nonsynonymous SNV	Rtn1:NM_153457:exon3:c.T1301A:p.F434Y	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	1	0.9854722	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr12	72449680	12A2p6	cell line	sgMsh2	72449680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	211	0	0	NA	exonic	Lrrc9	synonymous SNV	"Lrrc9:NM_001142728:exon3:c.T81C:p.V27V,Lrrc9:NM_001142729:exon3:c.T81C:p.V27V,Lrrc9:NM_030070:exon3:c.T81C:p.V27V"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.646632461	2	0.9998258	TTG	synonymous	NA	NA	NA	NA
M3	chr12	72477207	12A2p6	cell line	sgMsh2	72477207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	181	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon18:c.A2186G:p.N729S,Lrrc9:NM_030070:exon18:c.A2189G:p.N730S"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.813643494	1	0.8960026	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	73108786	12A2p6	cell line	sgMsh2	73108786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	3	0	0	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.C1406T:p.P469L,Six4:NM_001362272:exon3:c.C1382T:p.P461L"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.877878507	1	0.9891676	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr12	73112526	12A2p6	cell line	sgMsh2	73112526	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	57	3	1	0.333333333	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon1:c.T659C:p.V220A,Six4:NM_001362272:exon2:c.T635C:p.V212A"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.381127742	3	0.5821773	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	76025625	12A2p6	cell line	sgMsh2	76025625	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	200	52	5	0.096153846	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon71:c.A13452G:p.E4484E	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.492468431	2	0.9412599	AAC	synonymous	NA	NA	NA	NA
M3	chr12	76329067	12A2p6	cell line	sgMsh2	76329067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	319	6	0	0	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.A1251T:p.E417D	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.685173469	2	0.9999592	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	76329312	12A2p6	cell line	sgMsh2	76329312	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	374	4	0	0	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.C1496T:p.A499V	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.663761798	2	0.9999995	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr12	76404802	12A2p6	cell line	sgMsh2	76404802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	113	72	6	0.083333333	exonic	Hspa2	nonsynonymous SNV	"Hspa2:NM_008301:exon1:c.A269G:p.H90R,Hspa2:NM_001002012:exon2:c.A269G:p.H90R"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.47105676	2	0.8199073	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	76406380	12A2p6	cell line	sgMsh2	76406380	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	87	151	23	0.152317881	exonic	Hspa2	nonsynonymous SNV	"Hspa2:NM_008301:exon1:c.G1847C:p.G616A,Hspa2:NM_001002012:exon2:c.G1847C:p.G616A"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.569550446	2	0.9868237	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr12	76564382	12A2p6	cell line	sgMsh2	76564382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	99	87	23	0.264367816	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon6:c.T692C:p.V231A	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.72799681	2	0.6715979	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr12	76601870	12A2p6	cell line	sgMsh2	76601870	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.181	33	0	0	NA	exonic	Sptb	stopgain	Sptb:NM_013675:exon27:c.G5788T:p.E1930X	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.775102486	1	0.7881314	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr12	78845245	12A2p6	cell line	sgMsh2	78845245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	183	274	52	0.189781022	exonic	Atp6v1d	nonsynonymous SNV	Atp6v1d:NM_023721:exon8:c.G583A:p.E195K	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.719432142	2	0.9597947	TCT	nonsynonymous	CT	9	CTCTCTCTC	NA
M3	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	128	32	4	0.125	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.638067793	2	0.9929922	TCG	nonsynonymous	NA	NA	NA	NA
M3	chr12	80205051	12A2p6	cell line	sgMsh2	80205051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	79	1091	133	0.121906508	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon3:c.A251G:p.K84R,Actn1:NM_001379075:exon3:c.A251G:p.K84R,Actn1:NM_001379076:exon3:c.A56G:p.K19R,Actn1:NM_134156:exon3:c.A251G:p.K84R"	12qC3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.96352519	1	0.9959664	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	183	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.719432142	2	0.9597947	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr12	81559820	12A2p6	cell line	sgMsh2	81559820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	201	0	0	NA	exonic	Adam21	synonymous SNV	Adam21:NM_020330:exon2:c.G1167A:p.K389K	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.702302805	2	0.9910575	TCT	synonymous	NA	NA	NA	NA
M3	chr12	81734093	12A2p6	cell line	sgMsh2	81734093	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	99	33	12	0.363636364	exonic	Map3k9	nonsynonymous SNV	"Map3k9:NM_001174107:exon5:c.G1292T:p.R431M,Map3k9:NM_177395:exon5:c.G1292T:p.R431M"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	1	0.9995063	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr12	83555047	12A2p6	cell line	sgMsh2	83555047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	188	91	17	0.186813187	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon5:c.T286C:p.C96R,Zfyve1:NM_001359166:exon8:c.T1531C:p.C511R,Zfyve1:NM_183154:exon8:c.T1531C:p.C511R,Zfyve1:NM_001359167:exon9:c.T1531C:p.C511R"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.423951084	3	0.9483502	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	83774651	12A2p6	cell line	sgMsh2	83774651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	45	5	0	0	exonic	Papln	synonymous SNV	"Papln:NM_001205343:exon9:c.A756G:p.T252T,Papln:NM_130887:exon9:c.A756G:p.T252T"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.920701848	1	0.9621182	CAG	synonymous	NA	NA	NA	NA
M3	chr12	83811287	12A2p6	cell line	sgMsh2	83811287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	215	94	15	0.159574468	exonic	Numb	nonsynonymous SNV	"Numb:NM_001272055:exon3:c.A275G:p.K92R,Numb:NM_001136075:exon4:c.A308G:p.K103R,Numb:NM_010949:exon4:c.A308G:p.K103R,Numb:NM_001272056:exon5:c.A275G:p.K92R"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.453927423	3	0.6966687	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	84162393	12A2p6	cell line	sgMsh2	84162393	G	-	Deletion	Strelka2;Vardict	2	0.1765	51	15	1	0.066666667	exonic	Mideas	frameshift deletion	"Mideas:NM_001163501:exon4:c.1934delC:p.P645Lfs*57,Mideas:NM_001163502:exon4:c.1934delC:p.P645Lfs*57"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.755831982	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
M3	chr12	84920789	12A2p6	cell line	sgMsh2	84920789	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	75	64	11	0.171875	exonic	Arel1	nonsynonymous SNV	"Arel1:NM_001364190:exon18:c.T2260C:p.F754L,Arel1:NM_001364189:exon19:c.T2260C:p.F754L,Arel1:NM_178065:exon19:c.T2260C:p.F754L"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.822208162	1	0.8842727	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	85268127	12A2p6	cell line	sgMsh2	85268127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	235	60	6	0.1	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon2:c.T1284A:p.P428P,Mlh3:NM_175337:exon2:c.T1284A:p.P428P"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.560985777	2	0.9999509	CAG	synonymous	NA	NA	NA	NA
M3	chr12	85269125	12A2p6	cell line	sgMsh2	85269125	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	233	33	3	0.090909091	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.G286T:p.A96S,Mlh3:NM_175337:exon2:c.G286T:p.A96S"	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.77938482	2	0.5396369	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr12	85290268	12A2p6	cell line	sgMsh2	85290268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	101	9	2	0.222222222	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon2:c.A698G:p.K233R	12qD1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.873596172	1	0.9778135	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	85608172	12A2p6	cell line	sgMsh2	85608172	C	A	SNV	Mutect2;Vardict	2	0.138	35	19	4	0.210526316	exonic	Jdp2	nonsynonymous SNV	"Jdp2:NM_001205052:exon2:c.C8A:p.P3H,Jdp2:NM_001205053:exon2:c.C8A:p.P3H,Jdp2:NM_030887:exon2:c.C8A:p.P3H"	12qD2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.590962117	2	0.6585453	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr12	85876550	12A2p6	cell line	sgMsh2	85876550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	211	45	5	0.111111111	exonic	Ttll5	nonsynonymous SNV	"Ttll5:NM_001364628:exon9:c.T284C:p.L95P,Ttll5:NM_001081423:exon10:c.T800C:p.L267P,Ttll5:NM_001347395:exon10:c.T800C:p.L267P,Ttll5:NM_001364624:exon10:c.T800C:p.L267P,Ttll5:NM_001364625:exon10:c.T800C:p.L267P,Ttll5:NM_001364626:exon10:c.T800C:p.L267P,Ttll5:NM_001364627:exon10:c.T506C:p.L169P"	12qD2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.723714476	2	0.9740412	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr12	87369043	12A2p6	cell line	sgMsh2	87369043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	212	210	39	0.185714286	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon2:c.T209C:p.V70A	12qD2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.770820152	2	0.636704	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr12	91299010	12A2p6	cell line	sgMsh2	91299010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	217	22	2	0.090909091	exonic	Cep128	nonsynonymous SNV	Cep128:NM_181815:exon11:c.G827A:p.S276N	12qD3	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.6766088	2	0.9990281	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr12	98669232	12A2p6	cell line	sgMsh2	98669232	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.118	130	35	4	0.114285714	exonic	Spata7	frameshift deletion	"Spata7:NM_001289573:exon10:c.809delA:p.N271Mfs*3,Spata7:NM_001289572:exon11:c.1214delA:p.N406Mfs*3,Spata7:NM_001289574:exon12:c.992delA:p.N332Mfs*3,Spata7:NM_178914:exon12:c.1310delA:p.N438Mfs*3"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.505315433	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	143	30	6	0.2	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.539574106	2	0.9962905	ATG	synonymous	NA	NA	NA	NA
M3	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	74	13	0.175675676	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.796514157	1	0.7720396	TGA	synonymous	NA	NA	NA	NA
M3	chr12	98873139	12A2p6	cell line	sgMsh2	98873139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	129	6	0	0	exonic	Eml5	nonsynonymous SNV	Eml5:NM_001081191:exon7:c.T914C:p.I305T	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.972089858	1	0.9997562	AAT	nonsynonymous	A	5	AAAAA	NA
M3	chr12	99388707	12A2p6	cell line	sgMsh2	99388707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	104	56	6	0.107142857	exonic	Foxn3	nonsynonymous SNV	Foxn3:NM_183186:exon2:c.T197C:p.L66P	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.488186096	2	0.9137785	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	100853268	12A2p6	cell line	sgMsh2	100853268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	219	22	4	0.181818182	exonic	Dglucy	nonsynonymous SNV	"Dglucy:NM_001361023:exon8:c.A899G:p.D300G,Dglucy:NM_145448:exon9:c.A1238G:p.D413G,Dglucy:NM_001361020:exon10:c.A1238G:p.D413G,Dglucy:NM_001361017:exon11:c.A1328G:p.D443G"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.586679782	2	0.999991	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr12	101412325	12A2p6	cell line	sgMsh2	101412325	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	159	0	0	NA	exonic	Catsperb	nonsynonymous SNV	Catsperb:NM_173023:exon3:c.G84T:p.K28N	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.929266517	1	0.9995794	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	88	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.702302805	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M3	chr12	101706587	12A2p6	cell line	sgMsh2	101706587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	131	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon3:c.T94C:p.S32P,Tc2n:NM_028924:exon3:c.T94C:p.S32P"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.590962117	2	0.9988546	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	92	99	18	0.181818182	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.796514157	1	0.8019568	TTC	synonymous	NA	NA	NA	NA
M3	chr12	102489507	12A2p6	cell line	sgMsh2	102489507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	166	103	11	0.106796117	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon9:c.T1703C:p.L568P,Golga5:NM_013747:exon9:c.T1703C:p.L568P"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.869313838	1	0.993082	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr12	102840181	12A2p6	cell line	sgMsh2	102840181	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	84	145	11	0.075862069	exonic	Btbd7	frameshift deletion	"Btbd7:NM_001377026:exon2:c.1delA:p.M1Wfs*15,Btbd7:NM_172806:exon3:c.1delA:p.M1Wfs*15"	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.655197129	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr12	103095026	12A2p6	cell line	sgMsh2	103095026	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon26:c.C3643T:p.R1215C	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	1	0.999677	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr12	103241372	12A2p6	cell line	sgMsh2	103241372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	76	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon2:c.T61C:p.C21R	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.556703443	2	0.9759595	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	103241383	12A2p6	cell line	sgMsh2	103241383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	72	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon2:c.T50C:p.L17P	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.543856441	2	0.9693176	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	103558371	12A2p6	cell line	sgMsh2	103558371	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	127	0	0	NA	exonic	Ppp4r4	synonymous SNV	Ppp4r4:NM_028980:exon3:c.T201C:p.A67A	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.835055165	1	0.9443939	CTG	synonymous	NA	NA	NA	NA
M3	chr12	104696727	12A2p6	cell line	sgMsh2	104696727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	136	65	3	0.046153846	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.T4594C:p.Y1532H	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.488186096	2	0.9148523	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.123	112	70	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.526727104	NA	NA	TGT	frameshift	T	5	TTTTT	1
M3	chr12	105666683	12A2p6	cell line	sgMsh2	105666683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	121	34	11	0.323529412	exonic	Atg2b	nonsynonymous SNV	Atg2b:NM_029654:exon6:c.T838C:p.S280P	12qE	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.52244477	2	0.984944	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	153	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.950678188	1	0.9998073	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	108898193	12A2p6	cell line	sgMsh2	108898193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	65	9	1	0.111111111	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.T263C:p.L88P	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.75797315	1	0.6649813	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr12	110666605	12A2p6	cell line	sgMsh2	110666605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	128	266	28	0.105263158	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon77:c.A13849G:p.I4617V	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.492468431	2	0.931628	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr12	111543168	12A2p6	cell line	sgMsh2	111543168	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	159	766	119	0.15535248	exonic	Eif5	nonsynonymous SNV	"Eif5:NM_173363:exon10:c.T969G:p.H323Q,Eif5:NM_178041:exon10:c.T969G:p.H323Q"	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.398257079	3	0.9801012	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr12	111710911	12A2p6	cell line	sgMsh2	111710911	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	137	107	17	0.158878505	exonic	Bag5	synonymous SNV	"Bag5:NM_001324480:exon2:c.A477T:p.V159V,Bag5:NM_001324481:exon2:c.A477T:p.V159V,Bag5:NM_001324482:exon2:c.A477T:p.V159V,Bag5:NM_027404:exon2:c.A477T:p.V159V"	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.548138775	2	0.9973853	GTA	synonymous	NA	NA	NA	NA
M3	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	66	40	9	0.225	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.543856441	2	0.9580789	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	79	159	9	0.056603774	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	1	1	0.9983416	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	157	49	8	0.163265306	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.702302805	2	0.9652788	AGT	synonymous	NA	NA	NA	NA
M3	chr12	116142882	12A2p6	cell line	sgMsh2	116142882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	218	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon11:c.A1097G:p.Q366R	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.680891134	2	0.9987532	CAG	nonsynonymous	TTCC	8	TTCCTTCC	NA
M3	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	132	178	2	0.011235955	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.715149808	2	0.8823465	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M3	chr12	116407279	12A2p6	cell line	sgMsh2	116407279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	260	16	1	0.0625	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon3:c.T47C:p.V16A	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.62522079	2	0.9999971	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M3	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	201	12	1	0.083333333	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.698020471	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3	chr12	117870089	12A2p6	cell line	sgMsh2	117870089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	268	129	27	0.209302326	exonic	Cdca7l	synonymous SNV	Cdca7l:NM_146040:exon3:c.T243C:p.D81D	12qF2	chr12-3501831-119465464	5	4	1	0.96	4.111040811	NA	1	0.805078826	1	0.8462193	ATT	synonymous	NA	NA	NA	NA
M3	chr13	3941251	12A2p6	cell line	sgMsh2	3941251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	92	0	0	NA	exonic	Ucn3	nonsynonymous SNV	Ucn3:NM_031250:exon2:c.A400G:p.M134V	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr13	6614712	12A2p6	cell line	sgMsh2	6614712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	172	13	4	0.307692308	exonic	Pfkp	nonsynonymous SNV	"Pfkp:NM_001291071:exon8:c.A859G:p.I287V,Pfkp:NM_019703:exon8:c.A859G:p.I287V"	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.999974	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr13	8570409	12A2p6	cell line	sgMsh2	8570409	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	70	0	0	NA	exonic	Adarb2	nonsynonymous SNV	"Adarb2:NM_001289530:exon3:c.G930T:p.K310N,Adarb2:NM_052977:exon3:c.G930T:p.K310N"	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9952408	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr13	9551815	12A2p6	cell line	sgMsh2	9551815	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	115	27	12	0.444444444	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon7:c.G809A:p.R270Q	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998129	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr13	9662244	12A2p6	cell line	sgMsh2	9662244	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	149	19	0	0	exonic	Dip2c	frameshift deletion	Dip2c:NM_001081426:exon36:c.4402delA:p.S1469Vfs*13	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3	chr13	11799810	12A2p6	cell line	sgMsh2	11799810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	78	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon20:c.A2075G:p.H692R	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	12434499	12A2p6	cell line	sgMsh2	12434499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	148	80	17	0.2125	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon41:c.A5877G:p.K1959K	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999747	AAC	synonymous	NA	NA	NA	NA
M3	chr13	13002264	12A2p6	cell line	sgMsh2	13002264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	182	2	2	1	exonic	Prl2c2	nonsynonymous SNV	Prl2c2:NM_031191:exon2:c.A77C:p.N26T	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9949849	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr13	13708070	12A2p6	cell line	sgMsh2	13708070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	71	10	3	0.3	exonic	Lyst	synonymous SNV	Lyst:NM_010748:exon34:c.T8619C:p.A2873A	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	1	0.9973089	CTG	synonymous	NA	NA	NA	NA
M3	chr13	13775544	12A2p6	cell line	sgMsh2	13775544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	119	7	4	0.571428571	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon51:c.A11071G:p.I3691V	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998532	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr13	14248417	12A2p6	cell line	sgMsh2	14248417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	123	2	0	0	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon24:c.G4039T:p.G1347C	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9983039	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr13	14317081	12A2p6	cell line	sgMsh2	14317081	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	50	1	1	1	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.T1325G:p.L442R	13qA1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.7497468	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr13	21142224	12A2p6	cell line	sgMsh2	21142224	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	124	0	0	NA	exonic	Olfr1368	frameshift deletion	Olfr1368:NM_146534:exon1:c.832delT:p.Y278Tfs*10	13qA2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr13	21787561	12A2p6	cell line	sgMsh2	21787561	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	167	3	2	0.666666667	exonic	H2bc22	nonsynonymous SNV	"H2bc22:NM_001290466:exon1:c.A47C:p.K16T,H2bc22:NM_178202:exon1:c.A47C:p.K16T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.839337499	1	0.9688894	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr13	22179382	12A2p6	cell line	sgMsh2	22179382	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.225	348	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A201G:p.A67A	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	7.93E-09	CTG	synonymous	NA	NA	NA	NA
M3	chr13	22179385	12A2p6	cell line	sgMsh2	22179385	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.222	349	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A198G:p.V66V	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	2.74E-08	CTA	synonymous	NA	NA	NA	NA
M3	chr13	22278762	12A2p6	cell line	sgMsh2	22278762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	exonic	Vmn1r195	nonsynonymous SNV	Vmn1r195:NM_134223:exon1:c.T401G:p.L134R	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.9405361	CTC	nonsynonymous	CTC	11	CTCCTCCTCCT	NA
M3	chr13	22293238	12A2p6	cell line	sgMsh2	22293238	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	143	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.C46A:p.L16I	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9840577	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr13	22592687	12A2p6	cell line	sgMsh2	22592687	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	357	0	0	NA	exonic	Vmn1r205	stopgain	Vmn1r205:NM_134217:exon1:c.A244T:p.R82X	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.736561479	2	0.9970655	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr13	22592745	12A2p6	cell line	sgMsh2	22592745	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	311	0	0	NA	exonic	Vmn1r205	synonymous SNV	Vmn1r205:NM_134217:exon1:c.A186C:p.T62T	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.800796491	1	0.7873002	TTG	synonymous	NA	NA	NA	NA
M3	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	244	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr13	23482748	12A2p6	cell line	sgMsh2	23482748	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	115	0	0	NA	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon4:c.A686T:p.Q229L,Btn2a2:NM_001289615:exon4:c.A686T:p.Q229L,Btn2a2:NM_175938:exon4:c.A686T:p.Q229L"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.999203	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	23684273	12A2p6	cell line	sgMsh2	23684273	C	A	SNV	Mutect2;MuSe;Vardict	3	0.052	178	151	0	0	exonic	H2bc4	synonymous SNV	"H2bc4:NM_001290380:exon1:c.C42A:p.G14G,H2bc4:NM_023422:exon1:c.C42A:p.G14G"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.222681377	3	1.16E-08	GCT	synonymous	NA	NA	NA	NA
M3	chr13	23934081	12A2p6	cell line	sgMsh2	23934081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	135	0	0	NA	exonic	H2bc1	nonsynonymous SNV	H2bc1:NM_175663:exon1:c.A76G:p.K26E	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.999927	TTT	nonsynonymous	T	5	TTTTT	NA
M3	chr13	24069691	12A2p6	cell line	sgMsh2	24069691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	137	42	12	0.285714286	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon27:c.G2444A:p.R815H,Carmil1:NM_001384122:exon27:c.G2444A:p.R815H,Carmil1:NM_026825:exon28:c.G2456A:p.R819H"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999507	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr13	24073941	12A2p6	cell line	sgMsh2	24073941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	137	38	2	0.052631579	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon26:c.A2327C:p.K776T,Carmil1:NM_001384122:exon26:c.A2327C:p.K776T,Carmil1:NM_026825:exon27:c.A2339C:p.K780T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9994275	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	24137141	12A2p6	cell line	sgMsh2	24137141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	184	22	1	0.045454545	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon11:c.T870G:p.D290E,Carmil1:NM_001384122:exon11:c.T870G:p.D290E,Carmil1:NM_026825:exon11:c.T870G:p.D290E"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999972	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr13	27202423	12A2p6	cell line	sgMsh2	27202423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	158	0	0	NA	exonic	Prl3c1	synonymous SNV	"Prl3c1:NM_001163218:exon4:c.T330C:p.A110A,Prl3c1:NM_013766:exon4:c.T390C:p.A130A"	13qA3.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999862	CTG	synonymous	NA	NA	NA	NA
M3	chr13	32806806	12A2p6	cell line	sgMsh2	32806806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	56	100	32	0.32	exonic	Wrnip1	synonymous SNV	Wrnip1:NM_030215:exon3:c.T1047C:p.G349G	13qA3.2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9933432	GTG	synonymous	NA	NA	NA	NA
M3	chr13	34075091	12A2p6	cell line	sgMsh2	34075091	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	49	17	3	0.176470588	exonic	Tubb2a	nonsynonymous SNV	Tubb2a:NM_009450:exon4:c.T715A:p.C239S	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M3	chr13	38023126	12A2p6	cell line	sgMsh2	38023126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	121	6	5	0.833333333	exonic	Cage1	nonsynonymous SNV	Cage1:NM_027724:exon5:c.A1060G:p.T354A	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.9628616	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	38193434	12A2p6	cell line	sgMsh2	38193434	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	67	101	13	0.128712871	exonic	Dsp	synonymous SNV	Dsp:NM_023842:exon23:c.C5194T:p.L1732L	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9865536	GCT	synonymous	NA	NA	NA	NA
M3	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	92	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9660455	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr13	40280876	12A2p6	cell line	sgMsh2	40280876	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	54	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon2:c.A50C:p.K17T	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9759386	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	41135198	12A2p6	cell line	sgMsh2	41135198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	87	0	0	NA	exonic	Sycp2l	nonsynonymous SNV	Sycp2l:NM_001324525:exon8:c.A725G:p.N242S	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9536126	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr13	41312102	12A2p6	cell line	sgMsh2	41312102	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	140	119	34	0.285714286	exonic	Nedd9	synonymous SNV	"Nedd9:NM_017464:exon7:c.G2061A:p.K687K,Nedd9:NM_001111324:exon8:c.G2061A:p.K687K"	13qA3.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999589	GCT	synonymous	NA	NA	NA	NA
M3	chr13	43554995	12A2p6	cell line	sgMsh2	43554995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	59	12	1	0.083333333	exonic	Mcur1	nonsynonymous SNV	Mcur1:NM_001081059:exon2:c.T379C:p.C127R	13qA4	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9944444	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr13	44902585	12A2p6	cell line	sgMsh2	44902585	G	-	Deletion	Mutect2;Vardict	2	0.171	21	4	1	0.25	exonic	Jarid2	frameshift deletion	"Jarid2:NM_001360281:exon6:c.750delG:p.R253Gfs*1,Jarid2:NM_001205043:exon7:c.1266delG:p.R425Gfs*1,Jarid2:NM_001205044:exon8:c.1266delG:p.R425Gfs*1,Jarid2:NM_021878:exon8:c.1266delG:p.R425Gfs*1"	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.732279145	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr13	44923269	12A2p6	cell line	sgMsh2	44923269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	48	13	0.270833333	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon9:c.A691G:p.M231V	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9885134	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr13	46778973	12A2p6	cell line	sgMsh2	46778973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	184	22	5	0.227272727	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon26:c.A3243T:p.V1081V	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999972	TTA	synonymous	TC	9	TCTCTCTCT	NA
M3	chr13	48826109	12A2p6	cell line	sgMsh2	48826109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	116	68	14	0.205882353	exonic	Phf2	nonsynonymous SNV	Phf2:NM_011078:exon5:c.A545G:p.Y182C	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr13	48889928	12A2p6	cell line	sgMsh2	48889928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	25	244	55	0.225409836	exonic	Fam120a	nonsynonymous SNV	Fam120a:NM_001033268:exon14:c.C2489T:p.A830V	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9579167	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	49446385	12A2p6	cell line	sgMsh2	49446385	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	88	21	4	0.19047619	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon9:c.T866G:p.F289C,Ippk:NM_199056:exon9:c.T719G:p.F240C"	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9990385	TTC	nonsynonymous	CTT	10	CTTCTTCTTC	NA
M3	chr13	49464769	12A2p6	cell line	sgMsh2	49464769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	112	15	1	0.066666667	exonic	Cenpp	nonsynonymous SNV	Cenpp:NM_025495:exon7:c.T659C:p.V220A	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997755	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr13	49664072	12A2p6	cell line	sgMsh2	49664072	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	149	53	3	0.056603774	exonic	Nol8	frameshift deletion	Nol8:NM_001271397:exon8:c.2377delA:p.T795Hfs*27	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.796514157	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.254	73	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr13	52611067	12A2p6	cell line	sgMsh2	52611067	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	55	9	0	0	exonic	Syk	frameshift deletion	"Syk:NM_001198977:exon2:c.229delG:p.G78Afs*44,Syk:NM_011518:exon2:c.229delG:p.G78Afs*44"	13qA5	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3	chr13	53344835	12A2p6	cell line	sgMsh2	53344835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	25	116	35	0.301724138	exonic	Sptlc1	nonsynonymous SNV	Sptlc1:NM_009269:exon9:c.A854G:p.H285R	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9579167	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	71	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.984936861	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3	chr13	55718115	12A2p6	cell line	sgMsh2	55718115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	16	83	14	0.168674699	exonic	Txndc15	nonsynonymous SNV	Txndc15:NM_175150:exon2:c.T391C:p.Y131H	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9293665	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr13	56104303	12A2p6	cell line	sgMsh2	56104303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	77	275	13	0.047272727	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159514:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159515:exon4:c.A476G:p.K159R,Macroh2a1:NM_012015:exon4:c.A476G:p.K159R"	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.693738137	2	0.7338864	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	56804540	12A2p6	cell line	sgMsh2	56804540	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	0	0	NA	exonic	Trpc7	nonsynonymous SNV	"Trpc7:NM_001302372:exon7:c.G1817A:p.G606D,Trpc7:NM_012035:exon7:c.G1817A:p.G606D,Trpc7:NM_001302373:exon8:c.G662A:p.G221D"	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9891953	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr13	58409075	12A2p6	cell line	sgMsh2	58409075	T	C	SNV	Mutect2;MuSe;Vardict	3	0.285	68	23	2	0.086956522	exonic	Rmi1	synonymous SNV	"Rmi1:NM_028904:exon3:c.T1137C:p.S379S,Rmi1:NM_001168248:exon4:c.T1137C:p.S379S"	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9967736	CTG	synonymous	NA	NA	NA	NA
M3	chr13	58558259	12A2p6	cell line	sgMsh2	58558259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	127	0	0	NA	exonic	Slc28a3	synonymous SNV	Slc28a3:NM_022317:exon17:c.A1935G:p.V645V	13qB1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9872087	GTA	synonymous	NA	NA	NA	NA
M3	chr13	59782315	12A2p6	cell line	sgMsh2	59782315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	82	157	45	0.286624204	exonic	Tut7	nonsynonymous SNV	"Tut7:NM_001373962:exon26:c.A4111G:p.T1371A,Tut7:NM_001373963:exon26:c.A4111G:p.T1371A,Tut7:NM_001373964:exon26:c.A4111G:p.T1371A,Tut7:NM_153538:exon26:c.A4111G:p.T1371A"	13qB2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr13	60730966	12A2p6	cell line	sgMsh2	60730966	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	54	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon17:c.G1768A:p.A590T,Dapk1:NM_029653:exon17:c.G1768A:p.A590T,Dapk1:NM_134062:exon17:c.G1768A:p.A590T"	13qB2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9924912	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	61197629	12A2p6	cell line	sgMsh2	61197629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	132	0	0	NA	exonic	Cts6	nonsynonymous SNV	Cts6:NM_021445:exon6:c.A653C:p.N218T	13qB2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9931617	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr13	61568721	12A2p6	cell line	sgMsh2	61568721	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	141	0	0	NA	exonic	Cts3	stopgain	"Cts3:NM_026906:exon2:c.100delA:p.I34fs*0,Cts3:NM_054092:exon2:c.100delA:p.I34fs*0"	13qB2	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.830772831	NA	NA	ATT	nonsynonymous	TATTT	11	TATTTTATTTT	-1
M3	chr13	63033045	12A2p6	cell line	sgMsh2	63033045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	101	1	1	1	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon3:c.T820C:p.S274P,Aopep:NM_001289926:exon3:c.T820C:p.S274P"	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	ATC	nonsynonymous	C	5	CCCCC	NA
M3	chr13	63543180	12A2p6	cell line	sgMsh2	63543180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	111	26	4	0.153846154	exonic	Ptch1	nonsynonymous SNV	"Ptch1:NM_001328514:exon7:c.A773G:p.N258S,Ptch1:NM_008957:exon7:c.A929G:p.N310S"	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997615	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr13	64794243	12A2p6	cell line	sgMsh2	64794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon5:c.A672G:p.I224M	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr13	64921192	12A2p6	cell line	sgMsh2	64921193	TT	CC	DBS	Mutect2;Vardict	2	0.302	68	0	0	NA	exonic	Spata31	nonframeshift substitution	Spata31:NM_030047:exon3:c.1153_1154CC:p.L385P	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	65194254	12A2p6	cell line	sgMsh2	65194254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	130	0	0	NA	exonic	Nlrp4f	nonsynonymous SNV	Nlrp4f:NM_175290:exon3:c.C1576T:p.H526Y	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9997251	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr13	66956436	12A2p6	cell line	sgMsh2	66956436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	143	111	32	0.288288288	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A371G:p.E124G	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9890294	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	120	21	2	0.095238095	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.873596172	NA	NA	TAG	frameshift	NA	NA	NA	-1
M3	chr13	70767871	12A2p6	cell line	sgMsh2	70767871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	91	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon16:c.A2444G:p.N815S	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	1	0.9991983	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	70768603	12A2p6	cell line	sgMsh2	70768603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	104	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon15:c.A2269G:p.N757D	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	73982678	12A2p6	cell line	sgMsh2	73982678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	140	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.T875C:p.L292P	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999589	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr13	73982683	12A2p6	cell line	sgMsh2	73982683	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	139	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.C880A:p.L294I	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999563	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	139	113	30	0.265486726	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9829164	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	76135249	12A2p6	cell line	sgMsh2	76135249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.244	141	51	14	0.274509804	exonic	Ttc37	nonsynonymous SNV	Ttc37:NM_001081352:exon24:c.T2459C:p.L820P	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	77259933	12A2p6	cell line	sgMsh2	77259933	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.197	76	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon7:c.C1320A:p.S440S	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9270669	CCA	synonymous	NA	NA	NA	NA
M3	chr13	77761927	12A2p6	cell line	sgMsh2	77761927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	59	26	8	0.307692308	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163419:exon3:c.G160A:p.A54T,Fam172a:NM_001163420:exon3:c.G160A:p.A54T,Fam172a:NM_138312:exon4:c.G298A:p.A100T"	13qC1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9944444	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	81479769	12A2p6	cell line	sgMsh2	81479769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	143	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon53:c.C10972T:p.L3658L	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9994646	AGT	synonymous	NA	NA	NA	NA
M3	chr13	81523753	12A2p6	cell line	sgMsh2	81523753	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	80	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon31:c.A6722C:p.E2241A	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	1	0.9984391	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr13	81669464	12A2p6	cell line	sgMsh2	81669464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	179	66	16	0.242424242	exonic	Lysmd3	nonsynonymous SNV	Lysmd3:NM_030257:exon3:c.G559A:p.A187T	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999961	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	84294754	12A2p6	cell line	sgMsh2	84294754	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	123	29	3	0.103448276	exonic	Tmem161b	frameshift deletion	"Tmem161b:NM_001361908:exon11:c.957delA:p.N321Tfs*14,Tmem161b:NM_001361909:exon11:c.792delA:p.N266Tfs*14,Tmem161b:NM_001361911:exon12:c.792delA:p.N266Tfs*14,Tmem161b:NM_175187:exon12:c.1338delA:p.N448Tfs*14"	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr13	86045853	12A2p6	cell line	sgMsh2	86045853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	141	39	13	0.333333333	exonic	Cox7c	nonsynonymous SNV	Cox7c:NM_007749:exon2:c.T92C:p.V31A	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr13	89608035	12A2p6	cell line	sgMsh2	89608035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	71	0	0	NA	exonic	Hapln1	synonymous SNV	Hapln1:NM_013500:exon5:c.T957C:p.P319P	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.9292437	CTA	synonymous	NA	NA	NA	NA
M3	chr13	92368285	12A2p6	cell line	sgMsh2	92368285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	89	106	28	0.264150943	exonic	Dhfr	nonsynonymous SNV	Dhfr:NM_010049:exon5:c.A470G:p.Y157C	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9886852	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr13	93498393	12A2p6	cell line	sgMsh2	93498393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	57	37	5	0.135135135	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.A914G:p.D305G	13qC3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr13	95632131	12A2p6	cell line	sgMsh2	95632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	83	162	25	0.154320988	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon33:c.A4260G:p.K1420K	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9976153	GTT	synonymous	NA	NA	NA	NA
M3	chr13	95707884	12A2p6	cell line	sgMsh2	95707884	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.248	128	98	22	0.224489796	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1515C:p.K505N	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999149	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	95707886	12A2p6	cell line	sgMsh2	95707886	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.248	128	114	21	0.184210526	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1513C:p.K505Q	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999149	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr13	95716096	12A2p6	cell line	sgMsh2	95716096	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	123	131	29	0.221374046	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon12:c.A1318T:p.I440F	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.745126147	2	0.6518929	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr13	95716136	12A2p6	cell line	sgMsh2	95716136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	133	105	16	0.152380952	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon12:c.A1278G:p.Q426Q	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9920588	CTT	synonymous	NA	NA	NA	NA
M3	chr13	96634855	12A2p6	cell line	sgMsh2	96634855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	181	121	15	0.123966942	exonic	Cert1	nonsynonymous SNV	"Cert1:NM_001164222:exon15:c.T1541C:p.L514P,Cert1:NM_023420:exon16:c.T1619C:p.L540P"	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999966	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	97172972	12A2p6	cell line	sgMsh2	97172972	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	144	41	11	0.268292683	exonic	Gfm2	nonsynonymous SNV	"Gfm2:NM_001271464:exon18:c.G1855T:p.A619S,Gfm2:NM_001146043:exon19:c.G1936T:p.A646S,Gfm2:NM_001271463:exon19:c.G1936T:p.A646S,Gfm2:NM_001271465:exon19:c.G1930T:p.A644S,Gfm2:NM_177266:exon19:c.G1936T:p.A646S"	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999678	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	97961393	12A2p6	cell line	sgMsh2	97961393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	79	15	0.189873418	exonic	Arhgef28	synonymous SNV	Arhgef28:NM_012026:exon22:c.C2712T:p.F904F	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9415555	AGA	synonymous	GAA	10	GAAGAAGAAG	NA
M3	chr13	99434640	12A2p6	cell line	sgMsh2	99434640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	129	96	17	0.177083333	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.G1572A:p.Q524Q	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	CCT	synonymous	NA	NA	NA	NA
M3	chr13	100055207	12A2p6	cell line	sgMsh2	100055207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	150	60	25	0.416666667	exonic	Bdp1	synonymous SNV	Bdp1:NM_001081061:exon21:c.T4263C:p.N1421N	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9989186	CAT	synonymous	NA	NA	NA	NA
M3	chr13	100061007	12A2p6	cell line	sgMsh2	100061007	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	160	50	20	0.4	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A2869T:p.I957F	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999878	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr13	100489157	12A2p6	cell line	sgMsh2	100489157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	141	78	24	0.307692308	exonic	Gtf2h2	synonymous SNV	"Gtf2h2:NM_001360706:exon4:c.T150C:p.H50H,Gtf2h2:NM_022011:exon4:c.T150C:p.H50H"	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	CAT	synonymous	NA	NA	NA	NA
M3	chr13	100600570	12A2p6	cell line	sgMsh2	100600570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	149	34	12	0.352941176	exonic	Marveld2	nonsynonymous SNV	"Marveld2:NM_178410:exon4:c.A554G:p.Q185R,Marveld2:NM_001038602:exon5:c.A1385G:p.Q462R"	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9999419	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr13	100803340	12A2p6	cell line	sgMsh2	100803340	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	52	120	29	0.241666667	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2237C:p.K746T	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9915312	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr13	100803403	12A2p6	cell line	sgMsh2	100803403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	60	107	38	0.355140187	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2174C:p.E725A	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9585413	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr13	100811369	12A2p6	cell line	sgMsh2	100811369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	81	101	2	0.01980198	exonic	Slc30a5	frameshift deletion	Slc30a5:NM_022885:exon12:c.1500delT:p.F500Lfs*9	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr13	102735820	12A2p6	cell line	sgMsh2	102735820	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	132	46	6	0.130434783	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.T7039G:p.C2347G	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9998765	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr13	104205535	12A2p6	cell line	sgMsh2	104205535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	156	53	11	0.20754717	exonic	Ppwd1	nonsynonymous SNV	Ppwd1:NM_172807:exon11:c.A1910G:p.D637G	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9997457	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr13	105109575	12A2p6	cell line	sgMsh2	105109575	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	111	0	0	NA	exonic	Nt5el	nonsynonymous SNV	Nt5el:NM_025751:exon3:c.G643A:p.A215T	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997615	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr13	105444648	12A2p6	cell line	sgMsh2	105444648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	95	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.T395C:p.L132P	13qD1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr13	107743537	12A2p6	cell line	sgMsh2	107743537	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	141	18	0	0	exonic	Zswim6	frameshift deletion	Zswim6:NM_145456:exon11:c.1809delA:p.E604Sfs*6	13qD2.1	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr13	117902812	12A2p6	cell line	sgMsh2	117902812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	162	0	0	NA	exonic	Hcn1	synonymous SNV	Hcn1:NM_010408:exon5:c.T1263C:p.H421H	13qD2.3	chr13-3556297-119495179	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999892	ATG	synonymous	NA	NA	NA	NA
M3	chr14	13493535	12A2p6	cell line	sgMsh2	13493535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	0	0	NA	exonic	Synpr	nonsynonymous SNV	"Synpr:NM_001163032:exon2:c.T52C:p.C18R,Synpr:NM_028052:exon3:c.T112C:p.C38R"	14qA1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9571392	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr14	14937751	12A2p6	cell line	sgMsh2	14937751	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Nek10	synonymous SNV	Nek10:NM_001195229:exon25:c.T2469G:p.A823A	14qA1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9965726	CTG	synonymous	NA	NA	NA	NA
M3	chr14	16418484	12A2p6	cell line	sgMsh2	16418484	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	60	234	79	0.337606838	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon28:c.A3703T:p.T1235S	14qA2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	1	0.9947696	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	20409302	12A2p6	cell line	sgMsh2	20409302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	162	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon17:c.A1942G:p.S648G,Cfap70:NM_001163639:exon17:c.A1978G:p.S660G,Cfap70:NM_029698:exon18:c.A2110G:p.S704G"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999892	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr14	20586018	12A2p6	cell line	sgMsh2	20586018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	110	14	5	0.357142857	exonic	Usp54	synonymous SNV	Usp54:NM_030180:exon9:c.T957C:p.D319D	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	CAT	synonymous	CAT	8	CATCATCA	NA
M3	chr14	20729830	12A2p6	cell line	sgMsh2	20729830	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	18	5	0.277777778	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.G341T:p.S114I	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9990193	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr14	21664671	12A2p6	cell line	sgMsh2	21664671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	39	42	4	0.095238095	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon16:c.A2672G:p.Q891R,Kat6b:NM_017479:exon16:c.A2672G:p.Q891R"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	1	0.9815572	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	21668379	12A2p6	cell line	sgMsh2	21668379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	60	53	9	0.169811321	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon17:c.A2798G:p.N933S,Kat6b:NM_017479:exon17:c.A2798G:p.N933S"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9947696	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	21837886	12A2p6	cell line	sgMsh2	21837886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	252	938	190	0.202558635	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon5:c.T296C:p.I99T	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	4.71E-08	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	57	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.997783864	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	46	29	6	0.206896552	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr14	25643671	12A2p6	cell line	sgMsh2	25643671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	85	76	21	0.276315789	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon8:c.A539G:p.Q180R,Zmiz1:NM_183208:exon8:c.A539G:p.Q180R"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7459006	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	25651309	12A2p6	cell line	sgMsh2	25651309	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	17	79	17	0.215189873	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon14:c.C1585T:p.P529S,Zmiz1:NM_183208:exon14:c.C1603T:p.P535S"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	1	0.9332787	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr14	26422496	12A2p6	cell line	sgMsh2	26422496	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	172	248	62	0.25	exonic	Slmap	nonsynonymous SNV	"Slmap:NM_001347494:exon18:c.A2070C:p.Q690H,Slmap:NM_032008:exon20:c.A2172C:p.Q724H,Slmap:NM_001310445:exon21:c.A2235C:p.Q745H"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999941	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	27472387	12A2p6	cell line	sgMsh2	27472387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	121	42	13	0.30952381	exonic	Tasor	synonymous SNV	"Tasor:NM_001114879:exon18:c.T3543C:p.D1181D,Tasor:NM_028945:exon18:c.T3543C:p.D1181D"	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998699	ATA	synonymous	NA	NA	NA	NA
M3	chr14	28317261	12A2p6	cell line	sgMsh2	28317261	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	47	1	0	0	exonic	Erc2	nonsynonymous SNV	Erc2:NM_001347497:exon19:c.G2920A:p.G974S	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9885657	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr14	29396497	12A2p6	cell line	sgMsh2	29396497	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	97	0	0	NA	exonic	Cacna2d3	frameshift deletion	Cacna2d3:NM_009785:exon5:c.468delC:p.N157Mfs*8	14qA3	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.96352519	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	55	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3	chr14	30602720	12A2p6	cell line	sgMsh2	30602720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	72	42	34	0.80952381	exonic	Prkcd	synonymous SNV	Prkcd:NM_001310682:exon9:c.T996C:p.H332H	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	TAT	synonymous	NA	NA	NA	NA
M3	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	61	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	110	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	31163844	12A2p6	cell line	sgMsh2	31163844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	61	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon2:c.T172C:p.W58R	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	1	0.9950758	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	83	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9920535	AGC	synonymous	NA	NA	NA	NA
M3	chr14	32177268	12A2p6	cell line	sgMsh2	32177268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	226	11	2	0.181818182	exonic	Ncoa4	synonymous SNV	"Ncoa4:NM_001033988:exon9:c.T1767C:p.R589R,Ncoa4:NM_001284319:exon9:c.T1482C:p.R494R,Ncoa4:NM_019744:exon9:c.T1767C:p.R589R"	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9998112	GTA	synonymous	NA	NA	NA	NA
M3	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	53	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr14	32661078	12A2p6	cell line	sgMsh2	32661078	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	71	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.G2929T:p.G977W	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr14	35323401	12A2p6	cell line	sgMsh2	35323401	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	166	0	0	NA	exonic	Grid1	synonymous SNV	Grid1:NM_008166:exon8:c.C1200A:p.T400T	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9999816	CCT	synonymous	NA	NA	NA	NA
M3	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	84	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr14	35580682	12A2p6	cell line	sgMsh2	35580682	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	26	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon16:c.A2903T:p.H968L	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	2	1	1	0.9602973	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	44	4	1	0.25	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9863153	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	44001982	12A2p6	cell line	sgMsh2	44001982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	169	0	0	NA	exonic	Ang6	nonsynonymous SNV	Ang6:NM_001011876:exon2:c.A288G:p.I96M	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999929	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr14	44989291	12A2p6	cell line	sgMsh2	44989291	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	124	0	0	NA	exonic	Ptger2	synonymous SNV	Ptger2:NM_008964:exon1:c.G327T:p.A109A	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	CGT	synonymous	NA	NA	NA	NA
M3	chr14	47548957	12A2p6	cell line	sgMsh2	47548957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	109	53	9	0.169811321	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon6:c.A839G:p.Y280C	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.646632461	2	0.9756676	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	89	30	5	0.166666667	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.999095	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Strelka2;Vardict	2	0.32	50	10	2	0.2	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M3	chr14	50034559	12A2p6	cell line	sgMsh2	50034559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	165	0	0	NA	exonic	Olfr725	synonymous SNV	Olfr725:NM_146317:exon1:c.T843C:p.I281I	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.999991	AAA	synonymous	NA	NA	NA	NA
M3	chr14	50034672	12A2p6	cell line	sgMsh2	50034672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	244	0	0	NA	exonic	Olfr725	nonsynonymous SNV	Olfr725:NM_146317:exon1:c.A730G:p.I244V	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.9123765	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr14	50084401	12A2p6	cell line	sgMsh2	50084401	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	380	0	0	NA	exonic	Olfr726	synonymous SNV	Olfr726:NM_146316:exon1:c.T279A:p.S93S	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	1.02E-09	AAG	synonymous	NA	NA	NA	NA
M3	chr14	50127283	12A2p6	cell line	sgMsh2	50127283	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.259	301	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.G705T:p.K235N	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	3.36E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr14	50281451	12A2p6	cell line	sgMsh2	50281451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	173	0	0	NA	exonic	Olfr732	synonymous SNV	Olfr732:NM_146665:exon1:c.T801C:p.A267A	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999944	CAG	synonymous	NA	NA	NA	NA
M3	chr14	50360858	12A2p6	cell line	sgMsh2	50360858	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	189	0	0	NA	exonic	Tlr11	synonymous SNV	Tlr11:NM_205819:exon2:c.G300A:p.L100L	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999979	TGC	synonymous	NA	NA	NA	NA
M3	chr14	50486172	12A2p6	cell line	sgMsh2	50486172	A	-	Deletion	Strelka2;Vardict	2	0.2298	309	0	0	NA	exonic	Olfr741	frameshift deletion	Olfr741:NM_207133:exon3:c.713delA:p.K240Rfs*11	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.984080394	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	64	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	50843777	12A2p6	cell line	sgMsh2	50843777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	70	22	0	0	exonic	Tep1	nonsynonymous SNV	Tep1:NM_009351:exon27:c.A4003G:p.R1335G	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.565268112	2	0.9639257	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	50854251	12A2p6	cell line	sgMsh2	50854251	T	-	Deletion	Strelka2;Vardict	2	0.17	100	25	0	0	exonic	Tep1	frameshift deletion	Tep1:NM_009351:exon12:c.1832delA:p.N611Ifs*12	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.72799681	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M3	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	64	2	0	0	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	CGT	synonymous	NA	NA	NA	NA
M3	chr14	51130482	12A2p6	cell line	sgMsh2	51130482	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	148	0	0	NA	exonic	Rnase6	synonymous SNV	"Rnase6:NM_030098:exon2:c.T330G:p.T110T,Rnase6:NM_001360117:exon3:c.T330G:p.T110T"	14qC1	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999747	CTG	synonymous	NA	NA	NA	NA
M3	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	133	324	49	0.151234568	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8817651	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M3	chr14	52206853	12A2p6	cell line	sgMsh2	52206853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	57	121	27	0.223140496	exonic	Chd8	synonymous SNV	Chd8:NM_201637:exon30:c.A5394G:p.Q1798Q	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	GTT	synonymous	GTT	9	GTTGTTGTT	NA
M3	chr14	52463354	12A2p6	cell line	sgMsh2	52463354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	219	0	0	NA	exonic	Olfr1508	synonymous SNV	Olfr1508:NM_020513:exon2:c.A654G:p.V218V	14qC2	chr14-7006943-52779282	4	2	2	0.96	4.111040811	NA	1	0.800796491	1	0.8018121	CTA	synonymous	NA	NA	NA	NA
M3	chr14	54242847	12A2p6	cell line	sgMsh2	54242847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	50	340	77	0.226470588	exonic	Dad1	nonsynonymous SNV	"Dad1:NM_001113358:exon2:c.A233C:p.N78T,Dad1:NM_010015:exon2:c.A233C:p.N78T"	14qC2	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.650914795	2	0.6794125	GTT	nonsynonymous	G	5	GGGGG	NA
M3	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	81	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9695908	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	55234740	12A2p6	cell line	sgMsh2	55234740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	91	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.G87A:p.A29A	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	CGG	synonymous	NA	NA	NA	NA
M3	chr14	55718447	12A2p6	cell line	sgMsh2	55718447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	82	30	10	0.333333333	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.A1352G:p.K451R,Rabggta:NM_001360387:exon14:c.A1352G:p.K451R,Rabggta:NM_001360388:exon14:c.A1352G:p.K451R"	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	43	20	5	0.25	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9854722	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	44	16	5	0.3125	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9649432	CTT	synonymous	NA	NA	NA	NA
M3	chr14	55769194	12A2p6	cell line	sgMsh2	55769194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	75	0	0	NA	exonic	Adcy4	nonsynonymous SNV	"Adcy4:NM_001361604:exon26:c.A3181G:p.T1061A,Adcy4:NM_080435:exon26:c.A3181G:p.T1061A"	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9978873	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr14	56503935	12A2p6	cell line	sgMsh2	56503935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	175	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon28:c.T3846C:p.H1282H	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9999777	ATG	synonymous	NA	NA	NA	NA
M3	chr14	56620490	12A2p6	cell line	sgMsh2	56620490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	110	27	10	0.37037037	exonic	Parp4	nonsynonymous SNV	Parp4:NM_001145978:exon22:c.G2578A:p.V860I	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	2	1	1	0.9997466	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	116	84	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.787949489	1	0.7381368	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	56771844	12A2p6	cell line	sgMsh2	56771844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	224	70	15	0.214285714	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon2:c.T532G:p.F178V	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999987	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	57597081	12A2p6	cell line	sgMsh2	57597081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	53	34	12	0.352941176	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.T2041C:p.Y681H,Xpo4:NM_001368697:exon16:c.T1819C:p.Y607H"	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9399955	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	145	172	1	0.005813953	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr14	60300445	12A2p6	cell line	sgMsh2	60300445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	100	97	28	0.288659794	exonic	Mtmr6	nonsynonymous SNV	Mtmr6:NM_144843:exon14:c.A1778C:p.D593A	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995354	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	60692191	12A2p6	cell line	sgMsh2	60692191	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	86	2	0	0	exonic	Spata13	synonymous SNV	Spata13:NM_001033272:exon2:c.C1197A:p.P399P	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	2	1	1	0.9989147	CCT	synonymous	NA	NA	NA	NA
M3	chr14	61213807	12A2p6	cell line	sgMsh2	61213807	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	123	10	0	0	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.G13301T:p.R4434M	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr14	62364044	12A2p6	cell line	sgMsh2	62364044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	171	63	16	0.253968254	exonic	Rnaseh2b	nonsynonymous SNV	Rnaseh2b:NM_026001:exon8:c.T622C:p.Y208H	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999937	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr14	62414291	12A2p6	cell line	sgMsh2	62414291	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	82	0	0	NA	exonic	Gucy1b2	synonymous SNV	"Gucy1b2:NM_001204340:exon10:c.A1210C:p.R404R,Gucy1b2:NM_172810:exon10:c.A1255C:p.R419R"	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.535291772	2	0.9776125	CTT	synonymous	NA	NA	NA	NA
M3	chr14	62708908	12A2p6	cell line	sgMsh2	62708908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	73	18	0.246575342	exonic	Ints6	nonsynonymous SNV	Ints6:NM_008715:exon9:c.T1163C:p.V388A	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.753690815	2	0.5974294	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	63000947	12A2p6	cell line	sgMsh2	63000947	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	115	0	0	NA	exonic	Defb47	nonsynonymous SNV	Defb47:NM_001039125:exon2:c.C121A:p.L41I	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998129	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr14	63973377	12A2p6	cell line	sgMsh2	63973377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	104	0	0	NA	exonic	4930578I06Rik	nonsynonymous SNV	4930578I06Rik:NM_026359:exon3:c.A401G:p.E134G	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr14	64029195	12A2p6	cell line	sgMsh2	64029195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	58	0	0	NA	exonic	Rp1l1	synonymous SNV	Rp1l1:NM_146246:exon4:c.A2229G:p.E743E	14qD1	chr14-53294676-65386686	4	2	2	0.96	4.111040811	NA	1	0.698020471	2	0.5719382	AAC	synonymous	NA	NA	NA	NA
M3	chr14	68571494	12A2p6	cell line	sgMsh2	68571494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	44	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon9:c.A764G:p.Y255C	14qD1	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	2	1	1	0.9863153	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	54	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9924912	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr14	70195930	12A2p6	cell line	sgMsh2	70195930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	63	1	1	1	exonic	Sorbs3	synonymous SNV	"Sorbs3:NM_001271407:exon6:c.A498G:p.P166P,Sorbs3:NM_001271408:exon6:c.A498G:p.P166P,Sorbs3:NM_011366:exon6:c.A657G:p.P219P"	14qD2	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9956358	GTG	synonymous	TGGG	9	TGGGTGGGT	NA
M3	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	57	27	10	0.37037037	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	2	1	1	0.9937324	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	73365826	12A2p6	cell line	sgMsh2	73365826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	83	1396	452	0.323782235	exonic	Itm2b	nonsynonymous SNV	Itm2b:NM_008410:exon4:c.T490C:p.C164R	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986984	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	75036060	12A2p6	cell line	sgMsh2	75036060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	73	1	0	0	exonic	Rubcnl	synonymous SNV	"Rubcnl:NM_001374214:exon3:c.T75C:p.N25N,Rubcnl:NM_198642:exon4:c.T711C:p.N237N"	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9976155	ATA	synonymous	NA	NA	NA	NA
M3	chr14	75323341	12A2p6	cell line	sgMsh2	75323341	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	35	57	20	0.350877193	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon10:c.G1370A:p.R457H,Zc3h13:NM_026083:exon10:c.G1370A:p.R457H"	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.976612	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr14	76506610	12A2p6	cell line	sgMsh2	76506610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	21	1304	430	0.329754601	exonic	Tsc22d1	nonsynonymous SNV	"Tsc22d1:NM_001177751:exon3:c.A260G:p.Q87R,Tsc22d1:NM_001310647:exon3:c.A197G:p.Q66R,Tsc22d1:NM_009366:exon3:c.A368G:p.Q123R,Tsc22d1:NM_207652:exon3:c.A3170G:p.Q1057R,Tsc22d1:NM_001310646:exon5:c.A2924G:p.Q975R"	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	2	1	1	0.9469504	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	78086735	12A2p6	cell line	sgMsh2	78086735	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	73	0	0	NA	exonic	Fam216b	nonsynonymous SNV	Fam216b:NM_177629:exon2:c.A1G:p.M1V	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9976155	ATT	nonsynonymous	T	5	TTTTT	NA
M3	chr14	79062635	12A2p6	cell line	sgMsh2	79062635	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	69	22	6	0.272727273	exonic	Vwa8	synonymous SNV	"Vwa8:NM_027906:exon25:c.T2907A:p.I969I,Vwa8:NM_173758:exon25:c.T2907A:p.I969I"	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9969629	TTA	synonymous	NA	NA	NA	NA
M3	chr14	79610248	12A2p6	cell line	sgMsh2	79610248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	82	204	77	0.37745098	exonic	Sugt1	synonymous SNV	Sugt1:NM_026474:exon10:c.T537C:p.A179A	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986171	CTT	synonymous	NA	NA	NA	NA
M3	chr14	84448068	12A2p6	cell line	sgMsh2	84448068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	80	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G1974T:p.E658D	14qD3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9984391	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr14	86965554	12A2p6	cell line	sgMsh2	86965554	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	88	27	10	0.37037037	exonic	Diaph3	synonymous SNV	Diaph3:NM_019670:exon17:c.C1899A:p.I633I	14qE1	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9990385	CGA	synonymous	NA	NA	NA	NA
M3	chr14	99088770	12A2p6	cell line	sgMsh2	99088770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	68	61	11	0.180327869	exonic	Dis3	nonsynonymous SNV	"Dis3:NM_001360051:exon9:c.A811G:p.T271A,Dis3:NM_028315:exon9:c.A1378G:p.T460A,Dis3:NM_001360050:exon10:c.A1096G:p.T366A"	14qE2.2	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9967736	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr14	103123316	12A2p6	cell line	sgMsh2	103123316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	53	13	7	0.538461538	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon80:c.T13529C:p.I4510T	14qE2.3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	103285363	12A2p6	cell line	sgMsh2	103285363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	61	46	12	0.260869565	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon14:c.T2063C:p.M688T	14qE2.3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9950758	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	104478934	12A2p6	cell line	sgMsh2	104478934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	74	28	6	0.214285714	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T2002C:p.L668L	14qE2.3	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9977555	AAG	synonymous	NA	NA	NA	NA
M3	chr14	115370033	12A2p6	cell line	sgMsh2	115370033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	86	0	0	NA	exonic	Gpc5	nonsynonymous SNV	Gpc5:NM_175500:exon3:c.A827G:p.N276S	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9989147	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr14	118043133	12A2p6	cell line	sgMsh2	118043133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	44	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.T470C:p.V157A	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9863153	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	107	2	1	0.5	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.999696	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.267	48	8	2	0.25	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9892312	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr14	119139009	12A2p6	cell line	sgMsh2	119139009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	31	0	0	NA	exonic	Hs6st3	nonsynonymous SNV	Hs6st3:NM_015820:exon1:c.T595C:p.F199L	14qE4	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9703799	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	121994452	12A2p6	cell line	sgMsh2	121994452	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.31	30	45	14	0.311111111	exonic	Ubac2	nonsynonymous SNV	Ubac2:NM_026861:exon7:c.G789C:p.R263S	14qE5	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9685855	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	165	278	63	0.226618705	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.999991	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr14	122891529	12A2p6	cell line	sgMsh2	122891529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	75	30	13	0.433333333	exonic	Ggact	synonymous SNV	Ggact:NM_145466:exon3:c.A273G:p.T91T	14qE5	chr14-65388505-123291781	3	2	1	0.96	4.111040811	NA	1	1	1	0.9978873	CTG	synonymous	NA	NA	NA	NA
M3	chr14	123507512	12A2p6	cell line	sgMsh2	123507512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	82	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon10:c.A1103G:p.K368R	14qE5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	76	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	148	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	3320438	12A2p6	cell line	sgMsh2	3320438	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	186	40	10	0.25	exonic	Ghr	synonymous SNV	"Ghr:NM_001286370:exon11:c.C1257T:p.T419T,Ghr:NM_010284:exon11:c.C1257T:p.T419T"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.924984183	1	0.999811	AGG	synonymous	NA	NA	NA	NA
M3	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	131	18	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9999291	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M3	chr15	3991830	12A2p6	cell line	sgMsh2	3991830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	116	109	24	0.220183486	exonic	AW549877	nonsynonymous SNV	AW549877:NM_145930:exon3:c.A242C:p.K81T	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr15	4759828	12A2p6	cell line	sgMsh2	4759828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	46	0	0	NA	exonic	C6	nonsynonymous SNV	C6:NM_016704:exon7:c.A754G:p.T252A	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9878595	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.56	86	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9989147	ATG	synonymous	A	5	AAAAA	NA
M3	chr15	4938378	12A2p6	cell line	sgMsh2	4938378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	154	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon29:c.A2898T:p.L966L	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9999824	TAC	synonymous	NA	NA	NA	NA
M3	chr15	4949063	12A2p6	cell line	sgMsh2	4949063	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	109	0	0	NA	exonic	Mroh2b	nonsynonymous SNV	Mroh2b:NM_001166066:exon37:c.G4090T:p.A1364S	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9997307	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr15	5034235	12A2p6	cell line	sgMsh2	5034235	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.595	129	0	0	NA	exonic	C7	nonsynonymous SNV	C7:NM_001243837:exon7:c.G683A:p.R228Q	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9999199	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr15	6786507	12A2p6	cell line	sgMsh2	6786507	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	65	47	3	0.063829787	exonic	Rictor	frameshift deletion	Rictor:NM_030168:exon31:c.3259delT:p.F1088Lfs*6	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr15	6790600	12A2p6	cell line	sgMsh2	6790600	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	150	33	13	0.393939394	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon33:c.A4372C:p.R1458R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.646632461	2	0.9966216	AAG	synonymous	NA	NA	NA	NA
M3	chr15	7247153	12A2p6	cell line	sgMsh2	7247153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	32	0	0	NA	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon12:c.T1531C:p.Y511H,Egflam:NM_001289498:exon12:c.T1081C:p.Y361H,Egflam:NM_178748:exon12:c.T1531C:p.Y511H"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9720747	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	8154993	12A2p6	cell line	sgMsh2	8154993	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	130	72	4	0.055555556	exonic	Nup155	stopgain	Nup155:NM_133227:exon33:c.G3871T:p.E1291X	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.946395853	1	0.99935	TGA	nonsynonymous	ATGA	9	ATGAATGAA	NA
M3	chr15	8186626	12A2p6	cell line	sgMsh2	8186626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	152	27	6	0.222222222	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon12:c.A1499G:p.K500R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9999802	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	8359104	12A2p6	cell line	sgMsh2	8359104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.58	165	111	70	0.630630631	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon9:c.T1031C:p.M344T,Nipbl:NM_201232:exon9:c.T1031C:p.M344T"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.999991	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	9335781	12A2p6	cell line	sgMsh2	9335781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	211	0	0	NA	exonic	Ugt3a2	synonymous SNV	Ugt3a2:NM_144845:exon1:c.T87C:p.S29S	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.736561479	2	0.9419448	CTA	synonymous	NA	NA	NA	NA
M3	chr15	10371626	12A2p6	cell line	sgMsh2	10371626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	58	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon2:c.A113G:p.K38R,Agxt2:NM_001310735:exon2:c.A113G:p.K38R,Agxt2:NM_001310736:exon2:c.A110G:p.K37R"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9940991	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	10388850	12A2p6	cell line	sgMsh2	10388850	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	156	0	0	NA	exonic	Agxt2	stopgain	"Agxt2:NM_001031851:exon9:c.C1012T:p.R338X,Agxt2:NM_001310735:exon9:c.C928T:p.R310X,Agxt2:NM_001310736:exon9:c.C925T:p.R309X"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.830772831	1	0.948087	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr15	10960681	12A2p6	cell line	sgMsh2	10960681	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	83	0	0	NA	exonic	C1qtnf3	nonsynonymous SNV	"C1qtnf3:NM_001204134:exon3:c.G469A:p.G157S,C1qtnf3:NM_030888:exon3:c.G250A:p.G84S"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9986984	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr15	11215691	12A2p6	cell line	sgMsh2	11215691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	119	0	0	NA	exonic	Adamts12	nonsynonymous SNV	Adamts12:NM_175501:exon4:c.A797G:p.H266R	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9998532	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	12149561	12A2p6	cell line	sgMsh2	12149561	A	-	Deletion	Strelka2;Vardict	2	0.1395	43	157	9	0.057324841	exonic	Zfr	frameshift deletion	Zfr:NM_011767:exon7:c.1066delA:p.K358Rfs*4	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.597385618	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M3	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	105	30	5	0.166666667	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.445362755	2	0.5958543	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	12375226	12A2p6	cell line	sgMsh2	12375226	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.124	58	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A4822G:p.T1608A	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.531009438	2	0.9349625	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	12837294	12A2p6	cell line	sgMsh2	12837295	GA	-	Deletion	Strelka2;Vardict	2	0.2083	72	102	2	0.019607843	exonic	Drosha	frameshift deletion	"Drosha:NM_001130149:exon5:c.863_864del:p.R290Tfs*20,Drosha:NM_026799:exon5:c.863_864del:p.R290Tfs*20"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.892010209	NA	NA	CGA	frameshift	GA	8	GAGAGAGA	-2
M3	chr15	12842449	12A2p6	cell line	sgMsh2	12842449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.566	72	103	60	0.582524272	exonic	Drosha	nonsynonymous SNV	"Drosha:NM_001130149:exon7:c.A1205G:p.E402G,Drosha:NM_026799:exon7:c.A1205G:p.E402G"	15qA1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9974668	GAG	nonsynonymous	GGA	15	GGAGGAGGAGGAGGA	NA
M3	chr15	25964273	12A2p6	cell line	sgMsh2	25964273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	187	82	7	0.085365854	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T85A:p.C29S,Retreg1:NM_001277316:exon2:c.T109A:p.C37S,Retreg1:NM_001277317:exon2:c.T55A:p.C19S,Retreg1:NM_025459:exon3:c.T85A:p.C29S,Retreg1:NM_001034851:exon4:c.T457A:p.C153S"	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.91213718	1	0.9996174	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	26552827	12A2p6	cell line	sgMsh2	26552827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	99	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.C353T:p.P118L	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9995063	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr15	26552887	12A2p6	cell line	sgMsh2	26552887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	61	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.A293G:p.H98R	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9950758	GTG	nonsynonymous	GTGA	16	TGAGTGGGTGAGTGAG	NA
M3	chr15	28346829	12A2p6	cell line	sgMsh2	28346829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	53	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon45:c.T7457C:p.M2486T	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9920255	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr15	28411584	12A2p6	cell line	sgMsh2	28411584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	59	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.T11098C:p.Y3700H	15qB1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.937831185	1	0.982925	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr15	30847265	12A2p6	cell line	sgMsh2	30847265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	112	0	0	NA	exonic	Ctnnd2	synonymous SNV	"Ctnnd2:NM_001355502:exon12:c.A2001G:p.K667K,Ctnnd2:NM_008729:exon12:c.A2001G:p.K667K"	15qB2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9997755	AAA	synonymous	NA	NA	NA	NA
M3	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	186	27	5	0.185185185	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.847902167	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M3	chr15	35793877	12A2p6	cell line	sgMsh2	35793877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	90	32	6	0.1875	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon38:c.A6698G:p.H2233R	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9991482	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	36234870	12A2p6	cell line	sgMsh2	36234870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	132	6	3	0.5	exonic	Spag1	nonsynonymous SNV	"Spag1:NM_001359980:exon19:c.A2678C:p.Q893P,Spag1:NM_001359984:exon19:c.A2714C:p.Q905P,Spag1:NM_012031:exon19:c.A2678C:p.Q893P,Spag1:NM_001359982:exon20:c.A2714C:p.Q905P,Spag1:NM_001359981:exon21:c.A2714C:p.Q905P,Spag1:NM_001359983:exon21:c.A1979C:p.Q660P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999332	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	36507718	12A2p6	cell line	sgMsh2	36507718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	153	0	0	NA	exonic	Snx31	nonsynonymous SNV	"Snx31:NM_001347022:exon13:c.A1208G:p.H403R,Snx31:NM_025712:exon13:c.A1208G:p.H403R"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.916419514	1	0.9990257	GTG	nonsynonymous	T	5	TTTTT	NA
M3	chr15	38022377	12A2p6	cell line	sgMsh2	38022377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	183	32	0.174863388	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon15:c.T1882C:p.S628P,Ubr5:NM_001112721:exon15:c.T1864C:p.S622P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.907854846	1	0.9952184	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	38024902	12A2p6	cell line	sgMsh2	38024902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	147	97	28	0.288659794	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon14:c.T1629C:p.H543H,Ubr5:NM_001112721:exon14:c.T1611C:p.H537H"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.856466836	1	0.981984	CAT	synonymous	NA	NA	NA	NA
M3	chr15	39437851	12A2p6	cell line	sgMsh2	39437851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	75	18	7	0.388888889	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon4:c.A1553G:p.E518G,Rims2:NM_001256383:exon4:c.A1553G:p.E518G,Rims2:NM_053271:exon6:c.A1673G:p.E558G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.847902167	1	0.9327387	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
M3	chr15	39511363	12A2p6	cell line	sgMsh2	39511363	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	83	10	5	0.5	exonic	Rims2	synonymous SNV	"Rims2:NM_001256382:exon16:c.A3120T:p.S1040S,Rims2:NM_001256383:exon16:c.A3120T:p.S1040S,Rims2:NM_053271:exon18:c.A3240T:p.S1080S"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.980654527	1	0.997863	CAG	synonymous	NA	NA	NA	NA
M3	chr15	39534928	12A2p6	cell line	sgMsh2	39534928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	127	2	0	0	exonic	Rims2	synonymous SNV	"Rims2:NM_001256383:exon17:c.A3222G:p.R1074R,Rims2:NM_001256382:exon18:c.A3288G:p.R1096R"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9999096	GAT	synonymous	NA	NA	NA	NA
M3	chr15	39679291	12A2p6	cell line	sgMsh2	39679291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	96	6	0	0	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon3:c.A328G:p.S110G,Rims2:NM_001256383:exon23:c.A4123G:p.S1375G,Rims2:NM_001256382:exon24:c.A4189G:p.S1397G,Rims2:NM_053271:exon24:c.A4063G:p.S1355G"	15qB3.1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.685173469	2	0.8717264	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	44396537	12A2p6	cell line	sgMsh2	44396537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	158	146	32	0.219178082	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon7:c.T1141C:p.L381L,Nudcd1:NM_026149:exon7:c.T1144C:p.L382L"	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999862	AAG	synonymous	NA	NA	NA	NA
M3	chr15	44405825	12A2p6	cell line	sgMsh2	44405825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.617	97	119	53	0.445378151	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.T438C:p.S146S,Nudcd1:NM_026149:exon3:c.T438C:p.S146S"	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9994427	GAC	synonymous	NA	NA	NA	NA
M3	chr15	44546608	12A2p6	cell line	sgMsh2	44546608	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	178	15	3	0.2	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.A7510G:p.I2504V	15qB3.2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.903572512	1	0.9991718	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	47659065	12A2p6	cell line	sgMsh2	47659065	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	173	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon52:c.C8207T:p.S2736F	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.869313838	1	0.9939897	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr15	47660150	12A2p6	cell line	sgMsh2	47660150	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	131	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon51:c.C8059T:p.P2687S	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9999291	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	99	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.903572512	1	0.9906278	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr15	47704155	12A2p6	cell line	sgMsh2	47704155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	121	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.A6611T:p.D2204V	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9998699	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr15	47881537	12A2p6	cell line	sgMsh2	47881537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	109	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4373C:p.L1458P	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9997307	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	47881541	12A2p6	cell line	sgMsh2	47881541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	106	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4369C:p.F1457L	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.999677	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	47949999	12A2p6	cell line	sgMsh2	47949999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon21:c.T3448C:p.Y1150H	15qB3.3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.967807524	1	0.9996958	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr15	50660843	12A2p6	cell line	sgMsh2	50660843	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	190	9	4	0.444444444	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon6:c.T3690A:p.D1230E,Trps1:NM_032000:exon6:c.T3678A:p.D1226E,Trps1:NM_001310485:exon8:c.T3123A:p.D1041E"	15qC	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.999998	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	50846765	12A2p6	cell line	sgMsh2	50846765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	148	21	3	0.142857143	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon2:c.A188G:p.E63G,Trps1:NM_001310485:exon2:c.A188G:p.E63G,Trps1:NM_032000:exon2:c.A176G:p.E59G"	15qC	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.920701848	1	0.999047	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	128	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.762255484	2	0.5100401	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr15	57259163	12A2p6	cell line	sgMsh2	57259163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	45	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon3:c.T417C:p.D139D,Slc22a22:NM_172378:exon4:c.T417C:p.D139D"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9871102	AAT	synonymous	NA	NA	NA	NA
M3	chr15	58926473	12A2p6	cell line	sgMsh2	58926473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	154	38	10	0.263157895	exonic	Tatdn1	nonsynonymous SNV	"Tatdn1:NM_001368428:exon3:c.A101G:p.D34G,Tatdn1:NM_001368634:exon3:c.A101G:p.D34G,Tatdn1:NM_175151:exon3:c.A101G:p.D34G"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999458	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr15	60917930	12A2p6	cell line	sgMsh2	60917930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	64	0	0	NA	exonic	A1bg	nonsynonymous SNV	A1bg:NM_001081067:exon7:c.T1468C:p.Y490H	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9958915	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	65857540	12A2p6	cell line	sgMsh2	65857540	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	79	183	43	0.234972678	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon18:c.A1900C:p.S634R,Efr3a:NM_133766:exon18:c.A2008C:p.S670R"	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9983416	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	66002297	12A2p6	cell line	sgMsh2	66002297	T	-	Deletion	Strelka2;Vardict	2	0.1729	133	0	0	NA	exonic	Kcnq3	frameshift deletion	Kcnq3:NM_152923:exon12:c.1601delA:p.K534Sfs*5	15qD1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.740415579	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr15	66469846	12A2p6	cell line	sgMsh2	66469846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	137	0	0	NA	exonic	Lrrc6	nonsynonymous SNV	Lrrc6:NM_019457:exon4:c.T400C:p.F134L	15qD2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9999507	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	66615299	12A2p6	cell line	sgMsh2	66615299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	121	51	22	0.431372549	exonic	Phf20l1	synonymous SNV	Phf20l1:NM_001081409:exon11:c.A1260G:p.L420L	15qD2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9998699	TAC	synonymous	NA	NA	NA	NA
M3	chr15	66734572	12A2p6	cell line	sgMsh2	66734572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	180	0	0	NA	exonic	Tg	synonymous SNV	Tg:NM_009375:exon28:c.T5421C:p.T1807T	15qD2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.852184501	1	0.9865629	CTC	synonymous	NA	NA	NA	NA
M3	chr15	71462350	12A2p6	cell line	sgMsh2	71462350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	149	0	0	NA	exonic	Fam135b	synonymous SNV	Fam135b:NM_177819:exon13:c.A2994G:p.Q998Q	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999762	CTT	synonymous	NA	NA	NA	NA
M3	chr15	73522340	12A2p6	cell line	sgMsh2	73522340	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	21	3	0.142857143	exonic	Dennd3	synonymous SNV	Dennd3:NM_001081066:exon2:c.C213T:p.S71S	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9685855	GCT	synonymous	NA	NA	NA	NA
M3	chr15	74838917	12A2p6	cell line	sgMsh2	74838917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	48	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon4:c.A793C:p.I265L	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.775102486	1	0.7651777	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr15	75618270	12A2p6	cell line	sgMsh2	75618270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	28	11	2	0.181818182	exonic	Zfp41	nonsynonymous SNV	"Zfp41:NM_001044718:exon2:c.A70G:p.T24A,Zfp41:NM_011759:exon2:c.A70G:p.T24A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.882160841	1	0.09220694	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	76177742	12A2p6	cell line	sgMsh2	76177742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	114	127	20	0.157480315	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8147C:p.Y2716S,Plec:NM_201385:exon32:c.A8033C:p.Y2678S,Plec:NM_201386:exon32:c.A7994C:p.Y2665S,Plec:NM_201387:exon32:c.A7589C:p.Y2530S,Plec:NM_201388:exon32:c.A7589C:p.Y2530S,Plec:NM_201389:exon32:c.A8489C:p.Y2830S,Plec:NM_201390:exon32:c.A7964C:p.Y2655S,Plec:NM_201391:exon32:c.A8060C:p.Y2687S,Plec:NM_201392:exon32:c.A7589C:p.Y2530S,Plec:NM_201393:exon32:c.A8081C:p.Y2694S,Plec:NM_201394:exon32:c.A8060C:p.Y2687S,Plec:NM_001163540:exon33:c.A8504C:p.Y2835S,Plec:NM_001163549:exon33:c.A8075C:p.Y2692S,Plec:NM_001163542:exon34:c.A8198C:p.Y2733S,Plec:NM_001164203:exon34:c.A7589C:p.Y2530S"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.740843813	2	0.6490115	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr15	76178977	12A2p6	cell line	sgMsh2	76178977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	54	92	22	0.239130435	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A7045G:p.T2349A,Plec:NM_201385:exon31:c.A6931G:p.T2311A,Plec:NM_201386:exon31:c.A6892G:p.T2298A,Plec:NM_201387:exon31:c.A6487G:p.T2163A,Plec:NM_201388:exon31:c.A6487G:p.T2163A,Plec:NM_201389:exon31:c.A7387G:p.T2463A,Plec:NM_201390:exon31:c.A6862G:p.T2288A,Plec:NM_201391:exon31:c.A6958G:p.T2320A,Plec:NM_201392:exon31:c.A6487G:p.T2163A,Plec:NM_201393:exon31:c.A6979G:p.T2327A,Plec:NM_201394:exon31:c.A6958G:p.T2320A,Plec:NM_001163540:exon32:c.A7402G:p.T2468A,Plec:NM_001163549:exon32:c.A6973G:p.T2325A,Plec:NM_001163542:exon33:c.A7096G:p.T2366A,Plec:NM_001164203:exon33:c.A6487G:p.T2163A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9924912	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.165	51	82	18	0.219512195	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.706585139	1	0.5183115	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.165	50	86	18	0.209302326	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.706585139	1	0.5258047	AGA	synonymous	NA	NA	NA	NA
M3	chr15	76185871	12A2p6	cell line	sgMsh2	76185871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	48	70	23	0.328571429	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon23:c.T2984A:p.L995Q,Plec:NM_201385:exon23:c.T2870A:p.L957Q,Plec:NM_201386:exon23:c.T2831A:p.L944Q,Plec:NM_201387:exon23:c.T2426A:p.L809Q,Plec:NM_201388:exon23:c.T2426A:p.L809Q,Plec:NM_201389:exon23:c.T3326A:p.L1109Q,Plec:NM_201390:exon23:c.T2801A:p.L934Q,Plec:NM_201391:exon23:c.T2897A:p.L966Q,Plec:NM_201392:exon23:c.T2426A:p.L809Q,Plec:NM_201393:exon23:c.T2918A:p.L973Q,Plec:NM_201394:exon23:c.T2897A:p.L966Q,Plec:NM_001163540:exon24:c.T3341A:p.L1114Q,Plec:NM_001163549:exon24:c.T2912A:p.L971Q,Plec:NM_001163542:exon25:c.T3035A:p.L1012Q,Plec:NM_001164203:exon25:c.T2426A:p.L809Q"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9892312	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	76296687	12A2p6	cell line	sgMsh2	76296687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	135	19	7	0.368421053	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon27:c.T3815C:p.F1272S	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.740843813	2	0.7358269	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr15	76298186	12A2p6	cell line	sgMsh2	76298186	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	79	20	1	0.05	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon21:c.A2968T:p.M990L	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.646632461	2	0.0967218	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr15	76327562	12A2p6	cell line	sgMsh2	76327562	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.608	59	87	51	0.586206897	exonic	Exosc4	stopgain	Exosc4:NM_175399:exon1:c.A70T:p.K24X	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9944444	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr15	76451423	12A2p6	cell line	sgMsh2	76451423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.617	49	65	36	0.553846154	exonic	Mroh1	nonsynonymous SNV	Mroh1:NM_175457:exon39:c.T4265C:p.V1422A	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9898585	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	76593618	12A2p6	cell line	sgMsh2	76593618	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	98	43	0	0	exonic	Adck5	frameshift deletion	Adck5:NM_172960:exon5:c.530delG:p.G178Afs*46	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.924984183	NA	NA	CGG	frameshift	NA	NA	NA	-1
M3	chr15	76613338	12A2p6	cell line	sgMsh2	76613338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	77	18	17	0.944444444	exonic	Slc39a4	nonsynonymous SNV	Slc39a4:NM_028064:exon10:c.A1532G:p.Y511C	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.929266517	1	0.9899933	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr15	76718025	12A2p6	cell line	sgMsh2	76718025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	108	0	0	NA	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon5:c.C529A:p.L177I	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.882160841	1	0.9855537	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	102	16	3	0.1875	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9995884	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	76726668	12A2p6	cell line	sgMsh2	76726668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	67	19	1	0.052631579	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon8:c.T2735C:p.V912A,Arhgap39:NM_001168288:exon9:c.T2828C:p.V943A"	15qD3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.80936116	1	0.8483938	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	162	317	71	0.223974763	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999892	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr15	78459882	12A2p6	cell line	sgMsh2	78459882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	50	0	0	NA	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon5:c.T443C:p.I148T,Tmprss6:NM_027902:exon5:c.T479C:p.I160T"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9904495	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	78561912	12A2p6	cell line	sgMsh2	78561912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	49	0	0	NA	exonic	Rac2	nonsynonymous SNV	Rac2:NM_009008:exon6:c.T575C:p.L192P	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.856466836	1	0.9172563	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	78773060	12A2p6	cell line	sgMsh2	78773060	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	56	0	0	NA	exonic	Mfng	synonymous SNV	Mfng:NM_008595:exon1:c.G213A:p.L71L	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9933432	CCA	synonymous	NA	NA	NA	NA
M3	chr15	79259332	12A2p6	cell line	sgMsh2	79259332	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	30	1	0	0	exonic	Baiap2l2	synonymous SNV	Baiap2l2:NM_177580:exon12:c.A1305C:p.T435T	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.950678188	1	0.9512387	CTG	synonymous	NA	NA	NA	NA
M3	chr15	79317772	12A2p6	cell line	sgMsh2	79317772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	67	42	3	0.071428571	exonic	Pla2g6	synonymous SNV	"Pla2g6:NM_001199023:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199024:exon2:c.G198A:p.Q66Q,Pla2g6:NM_016915:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199025:exon3:c.G198A:p.Q66Q"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.590962117	2	0.9387671	TCT	synonymous	NA	NA	NA	NA
M3	chr15	80080908	12A2p6	cell line	sgMsh2	80080908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	96	65	40	0.615384615	exonic	Rpl3	synonymous SNV	Rpl3:NM_013762:exon4:c.T489C:p.I163I	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9994079	CAA	synonymous	NA	NA	NA	NA
M3	chr15	80355673	12A2p6	cell line	sgMsh2	80355673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	98	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon7:c.C922A:p.L308I	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.792231823	1	0.7781686	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr15	81671120	12A2p6	cell line	sgMsh2	81671120	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	84	32	8	0.25	exonic	L3mbtl2	nonsynonymous SNV	"L3mbtl2:NM_001289711:exon5:c.G573T:p.K191N,L3mbtl2:NM_001289712:exon5:c.G573T:p.K191N,L3mbtl2:NM_145993:exon5:c.G573T:p.K191N"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9987749	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr15	81910516	12A2p6	cell line	sgMsh2	81910516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	84	247	76	0.307692308	exonic	Aco2	nonsynonymous SNV	Aco2:NM_080633:exon12:c.T1474C:p.S492P	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9987749	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr15	81911900	12A2p6	cell line	sgMsh2	81911900	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	101	389	18	0.046272494	exonic	Aco2	synonymous SNV	Aco2:NM_080633:exon13:c.G1497T:p.L499L	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.680891134	2	0.09674771	TGG	synonymous	NA	NA	NA	NA
M3	chr15	83138335	12A2p6	cell line	sgMsh2	83138335	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	107	209	52	0.248803828	exonic	Poldip3	nonsynonymous SNV	"Poldip3:NM_001347082:exon2:c.G247A:p.A83T,Poldip3:NM_178627:exon2:c.G247A:p.A83T"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.783667155	1	0.7189075	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr15	83160416	12A2p6	cell line	sgMsh2	83160416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	69	404	73	0.180693069	exonic	Cyb5r3	nonsynonymous SNV	Cyb5r3:NM_029787:exon6:c.T469C:p.F157L	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.800796491	1	0.8238491	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr15	83614998	12A2p6	cell line	sgMsh2	83614998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	85	0	0	NA	exonic	Scube1	nonsynonymous SNV	"Scube1:NM_001271473:exon14:c.A1682G:p.D561G,Scube1:NM_022723:exon16:c.A1925G:p.D642G,Scube1:NM_001271472:exon17:c.A2015G:p.D672G"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.740843813	2	0.5122282	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr15	83852059	12A2p6	cell line	sgMsh2	83852059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	108	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon5:c.T652C:p.W218R,Mpped1:NM_001359132:exon5:c.T652C:p.W218R,Mpped1:NM_172610:exon5:c.T652C:p.W218R"	15qE1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	1	0.9997139	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr15	84105512	12A2p6	cell line	sgMsh2	84105512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.572	21	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T88C:p.F30L,Sult4a1:NM_013873:exon1:c.T88C:p.F30L"	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9469504	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	121	284	66	0.232394366	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9998699	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr15	84699603	12A2p6	cell line	sgMsh2	84699603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	43	33	8	0.242424242	exonic	Prr5	nonsynonymous SNV	"Prr5:NM_146061:exon6:c.T430C:p.S144P,Prr5:NM_001346662:exon7:c.T403C:p.S135P"	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9854722	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr15	85926240	12A2p6	cell line	sgMsh2	85926240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	58	45	10	0.222222222	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon18:c.T6446A:p.L2149Q	15qE2	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.6766088	2	0.6621575	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	89424843	12A2p6	cell line	sgMsh2	89424843	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	98	5	4	0.8	exonic	Cpt1b	nonsynonymous SNV	Cpt1b:NM_009948:exon3:c.G155T:p.R52M	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9994755	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr15	89814244	12A2p6	cell line	sgMsh2	89814244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	82	0	0	NA	exonic	Syt10	nonsynonymous SNV	Syt10:NM_018803:exon3:c.T896C:p.L299P	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9986171	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	90956316	12A2p6	cell line	sgMsh2	90956316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	95	9	2	0.222222222	exonic	Kif21a	stopgain	"Kif21a:NM_016705:exon25:c.T3596A:p.L1199X,Kif21a:NM_001109041:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109042:exon26:c.T3617A:p.L1206X,Kif21a:NM_001358050:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109040:exon27:c.T3656A:p.L1219X"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9993709	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr15	91188906	12A2p6	cell line	sgMsh2	91188906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	110	3	1	0.333333333	exonic	Abcd2	nonsynonymous SNV	"Abcd2:NM_001358967:exon2:c.A1049G:p.Y350C,Abcd2:NM_011994:exon2:c.A1049G:p.Y350C"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.950678188	1	0.9986445	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr15	91796139	12A2p6	cell line	sgMsh2	91796139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	160	14	2	0.142857143	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon42:c.T6252C:p.D2084D	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999878	ATG	synonymous	NA	NA	NA	NA
M3	chr15	92243027	12A2p6	cell line	sgMsh2	92243027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	181	0	0	NA	exonic	Cntn1	synonymous SNV	"Cntn1:NM_001159647:exon7:c.C633T:p.C211C,Cntn1:NM_001159648:exon7:c.C633T:p.C211C,Cntn1:NM_007727:exon7:c.C633T:p.C211C,Cntn1:NM_001358051:exon9:c.C633T:p.C211C"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9999966	GCT	synonymous	NA	NA	NA	NA
M3	chr15	92250886	12A2p6	cell line	sgMsh2	92250886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	110	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon10:c.A1013G:p.N338S,Cntn1:NM_001159648:exon10:c.A1013G:p.N338S,Cntn1:NM_007727:exon10:c.A1013G:p.N338S,Cntn1:NM_001358051:exon12:c.A1013G:p.N338S"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9997466	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	93512576	12A2p6	cell line	sgMsh2	93512576	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.192	76	13	2	0.153846154	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon2:c.T6G:p.P2P,Prickle1:NM_001364846:exon2:c.T6G:p.P2P"	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.822208162	1	0.8848502	AAG	synonymous	NA	NA	NA	NA
M3	chr15	94540303	12A2p6	cell line	sgMsh2	94540303	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.26	137	11	0	0	exonic	Pus7l	frameshift insertion	Pus7l:NM_172437:exon2:c.659dupT:p.K221Qfs*14	15qE3	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
M3	chr15	96414825	12A2p6	cell line	sgMsh2	96414825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	127	319	77	0.24137931	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon15:c.A4334G:p.K1445R	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9999096	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr15	96997032	12A2p6	cell line	sgMsh2	96997032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	133	0	0	NA	exonic	Slc38a4	nonsynonymous SNV	"Slc38a4:NM_001358058:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358059:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358060:exon16:c.A1602G:p.I534M,Slc38a4:NM_027052:exon16:c.A1602G:p.I534M"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.578115114	2	0.9990511	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr15	98293799	12A2p6	cell line	sgMsh2	98293799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.618	60	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon2:c.T5C:p.L2P,Zfp641:NM_173769:exon2:c.T5C:p.L2P"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	3	1	1	0.9947696	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr15	98806080	12A2p6	cell line	sgMsh2	98806080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	108	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.G1330T:p.G444C	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.813643494	1	0.8737007	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr15	98863015	12A2p6	cell line	sgMsh2	98863015	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	29	10	0	0	exonic	Kmt2d	frameshift deletion	Kmt2d:NM_001033276:exon11:c.2453delC:p.P818Hfs*4	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3	chr15	99579305	12A2p6	cell line	sgMsh2	99579305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	55	0	0	NA	exonic	Aqp2	synonymous SNV	Aqp2:NM_009699:exon1:c.C153T:p.G51G	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9929299	GCA	synonymous	NA	NA	NA	NA
M3	chr15	99628662	12A2p6	cell line	sgMsh2	99628662	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.375	109	57	0	0	exonic	Racgap1	frameshift insertion	"Racgap1:NM_001253808:exon10:c.1018dupC:p.L340Pfs*6,Racgap1:NM_001253809:exon10:c.1018dupC:p.L340Pfs*6,Racgap1:NM_012025:exon11:c.1018dupC:p.L340Pfs*6"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	NA	NA	CAG	frameshift	G	8	GGGGGGGG	1
M3	chr15	100209633	12A2p6	cell line	sgMsh2	100209633	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	75	51	17	0.333333333	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon31:c.G3523A:p.E1175K,Dip2b:NM_001159361:exon36:c.G4225A:p.E1409K"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9978873	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr15	100401578	12A2p6	cell line	sgMsh2	100401578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	86	25	5	0.2	exonic	Slc11a2	nonsynonymous SNV	"Slc11a2:NM_001146161:exon12:c.A1171G:p.T391A,Slc11a2:NM_001356952:exon12:c.A379G:p.T127A,Slc11a2:NM_008732:exon12:c.A1171G:p.T391A"	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	1	0.80936116	1	0.8524603	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	50	15	5	0.333333333	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	5	3	2	0.96	4.111040811	NA	2	1	1	0.9904495	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr15	102501533	12A2p6	cell line	sgMsh2	102501533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	48	17	9	0.529411765	exonic	Map3k12	synonymous SNV	"Map3k12:NM_009582:exon11:c.T1806C:p.H602H,Map3k12:NM_001163643:exon13:c.T1806C:p.H602H,Map3k12:NM_001358844:exon13:c.T1806C:p.H602H"	15qF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M3	chr15	103308984	12A2p6	cell line	sgMsh2	103308984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	0	0	NA	exonic	Gpr84	nonsynonymous SNV	Gpr84:NM_030720:exon2:c.T665C:p.I222T	15qF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr15	103462798	12A2p6	cell line	sgMsh2	103462798	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	93	0	0	NA	exonic	Nckap1l	nonsynonymous SNV	Nckap1l:NM_153505:exon7:c.A716C:p.N239T	15qF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	130	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	148	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr16	3979904	12A2p6	cell line	sgMsh2	3979904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	49	19	5	0.263157895	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon15:c.T4615C:p.F1539L	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr16	4128508	12A2p6	cell line	sgMsh2	4128508	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	119	40	9	0.225	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon6:c.G1506T:p.Q502H	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	48	3	1	0.333333333	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M3	chr16	8487424	12A2p6	cell line	sgMsh2	8487424	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.273	252	27	1	0.037037037	exonic	Mettl22	frameshift deletion	Mettl22:NM_146247:exon9:c.940delA:p.N315Mfs*16	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr16	8696888	12A2p6	cell line	sgMsh2	8696888	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	200	234	71	0.303418803	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon19:c.T2082G:p.D694E	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9998881	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	137	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999507	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	108	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997139	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr16	10511943	12A2p6	cell line	sgMsh2	10511943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	53	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon10:c.A2318G:p.N773S,Ciita:NM_001243761:exon10:c.A2081G:p.N694S,Ciita:NM_001302618:exon10:c.A2321G:p.N774S,Ciita:NM_007575:exon10:c.A2090G:p.N697S,Ciita:NM_001302619:exon11:c.A2018G:p.N673S"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8453334	AAC	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3	chr16	11088411	12A2p6	cell line	sgMsh2	11088411	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	36	6	0	0	exonic	Txndc11	frameshift deletion	Txndc11:NM_029582:exon8:c.1254delC:p.C419Afs*35	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr16	13827447	12A2p6	cell line	sgMsh2	13827447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	172	182	45	0.247252747	exonic	Ntan1	synonymous SNV	"Ntan1:NM_001346109:exon2:c.T220C:p.L74L,Ntan1:NM_001346111:exon2:c.T220C:p.L74L,Ntan1:NM_001346108:exon3:c.T286C:p.L96L,Ntan1:NM_001346110:exon3:c.T286C:p.L96L,Ntan1:NM_001346106:exon4:c.T310C:p.L104L,Ntan1:NM_001346107:exon4:c.T310C:p.L104L,Ntan1:NM_010946:exon4:c.T310C:p.L104L"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999934	CTT	synonymous	NA	NA	NA	NA
M3	chr16	13835196	12A2p6	cell line	sgMsh2	13835196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	61	133	35	0.263157895	exonic	Ntan1	nonsynonymous SNV	"Ntan1:NM_001346111:exon7:c.T611G:p.L204W,Ntan1:NM_001346109:exon8:c.T725G:p.L242W,Ntan1:NM_001346110:exon8:c.T677G:p.L226W,Ntan1:NM_001346106:exon9:c.T701G:p.L234W,Ntan1:NM_001346108:exon9:c.T791G:p.L264W,Ntan1:NM_010946:exon10:c.T815G:p.L272W"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	59	141	29	0.205673759	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9685611	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	103	100	30	0.3	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9993742	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr16	16318791	12A2p6	cell line	sgMsh2	16318791	-	G	Insertion	Strelka2;Vardict	2	0.2115	52	37	0	0	exonic	Dnm1l	frameshift insertion	"Dnm1l:NM_001360007:exon16:c.1703dupC:p.A569Cfs*4,Dnm1l:NM_001360008:exon16:c.1685dupC:p.A563Cfs*4,Dnm1l:NM_001360009:exon16:c.1703dupC:p.A569Cfs*4"	16qA2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.905713679	NA	NA	CAG	frameshift	AGC	15	CAGCAGAAGCAGCAG	1
M3	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	136	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	148	84	19	0.226190476	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9993558	CTC	synonymous	NA	NA	NA	NA
M3	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	46	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr16	19566134	12A2p6	cell line	sgMsh2	19566134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	347	0	0	NA	exonic	Olfr169	nonsynonymous SNV	Olfr169:NM_001011855:exon1:c.A748G:p.M250V	16qA3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	4.68E-08	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr16	20602046	12A2p6	cell line	sgMsh2	20602046	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	56	0	0	NA	exonic	Vwa5b2	nonsynonymous SNV	"Vwa5b2:NM_001384104:exon16:c.C2609T:p.P870L,Vwa5b2:NM_001384105:exon16:c.C2606T:p.P869L,Vwa5b2:NM_001144953:exon19:c.C2606T:p.P869L"	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9933432	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr16	21762633	12A2p6	cell line	sgMsh2	21762633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	161	6	4	0.666666667	exonic	Ehhadh	synonymous SNV	Ehhadh:NM_023737:exon7:c.A1608G:p.G536G	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999885	GTC	synonymous	NA	NA	NA	NA
M3	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	45	2	2	1	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9871102	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	21984223	12A2p6	cell line	sgMsh2	21984223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	100	0	0	NA	exonic	Liph	nonsynonymous SNV	"Liph:NM_001083894:exon2:c.G95T:p.S32I,Liph:NM_001289582:exon2:c.G95T:p.S32I,Liph:NM_153404:exon2:c.G95T:p.S32I"	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995354	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr16	22479410	12A2p6	cell line	sgMsh2	22479410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	exonic	Dgkg	nonsynonymous SNV	"Dgkg:NM_001346673:exon23:c.C2107T:p.P703S,Dgkg:NM_138650:exon24:c.C2224T:p.P742S"	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9957575	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	130	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999246	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	26710559	12A2p6	cell line	sgMsh2	26710559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	134	3	3	1	exonic	Il1rap	nonsynonymous SNV	"Il1rap:NM_001159317:exon9:c.T1130C:p.V377A,Il1rap:NM_001159318:exon9:c.T1130C:p.V377A,Il1rap:NM_008364:exon9:c.T1130C:p.V377A"	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999409	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	30561743	12A2p6	cell line	sgMsh2	30561743	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	33	148	15	0.101351351	exonic	Lsg1	frameshift deletion	Lsg1:NM_178069:exon14:c.1875delA:p.K625Nfs*23	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr16	31944509	12A2p6	cell line	sgMsh2	31944509	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.213	78	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T384G:p.N128K	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.985514	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr16	31944513	12A2p6	cell line	sgMsh2	31944513	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	79	0	0	NA	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.388delT:p.L130Cfs*38	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.959242856	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr16	31989060	12A2p6	cell line	sgMsh2	31989060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	107	64	18	0.28125	exonic	Senp5	nonsynonymous SNV	"Senp5:NM_001357087:exon2:c.A1375G:p.S459G,Senp5:NM_001357088:exon2:c.A1375G:p.S459G,Senp5:NM_177103:exon2:c.A1375G:p.S459G"	16qB2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9963731	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	32298440	12A2p6	cell line	sgMsh2	32298440	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	50	77	14	0.181818182	exonic	Rnf168	frameshift deletion	Rnf168:NM_027355:exon6:c.818delA:p.N275Ifs*30	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	119	17	11	0.647058824	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998532	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	161	64	11	0.171875	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999885	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	34198458	12A2p6	cell line	sgMsh2	34198458	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	116	12	0	0	exonic	Kalrn	frameshift deletion	"Kalrn:NM_001164268:exon25:c.3933delC:p.G1312Afs*64,Kalrn:NM_177357:exon25:c.3933delC:p.G1312Afs*64"	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3	chr16	34879075	12A2p6	cell line	sgMsh2	34879075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	29	6	1	0.166666667	exonic	Mylk	synonymous SNV	Mylk:NM_139300:exon8:c.A807G:p.K269K	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.966686	AAG	synonymous	C	5	CCCCC	NA
M3	chr16	35825306	12A2p6	cell line	sgMsh2	35825306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	37	20	4	0.2	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon8:c.A1360G:p.T454A	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9500575	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	77	1	0	0	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.47105676	2	0.8535821	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	36364275	12A2p6	cell line	sgMsh2	36364275	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	235	0	0	NA	exonic	Cstdc5	synonymous SNV	Cstdc5:NM_001082546:exon2:c.T105C:p.Y35Y	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9999838	CAT	synonymous	NA	NA	NA	NA
M3	chr16	36919438	12A2p6	cell line	sgMsh2	36919438	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	104	99	20	0.202020202	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon14:c.A8261T:p.E2754V	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr16	37115952	12A2p6	cell line	sgMsh2	37115952	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.194	24	3	0	0	exonic	Stxbp5l	nonsynonymous SNV	"Stxbp5l:NM_001114611:exon25:c.G3153T:p.M1051I,Stxbp5l:NM_001114612:exon26:c.G3324T:p.M1108I,Stxbp5l:NM_001114613:exon26:c.G3225T:p.M1075I,Stxbp5l:NM_172440:exon27:c.G3396T:p.M1132I"	16qB3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.8588834	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr16	43988139	12A2p6	cell line	sgMsh2	43988139	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	48	2	1	0.5	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon9:c.G960T:p.K320N,Gramd1c:NM_153528:exon9:c.G960T:p.K320N,Gramd1c:NM_001359085:exon13:c.G1491T:p.K497N"	16qB4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.75797315	1	9.23E-05	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	185	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999973	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr16	44421131	12A2p6	cell line	sgMsh2	44421131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	140	0	0	NA	exonic	Cfap44	nonsynonymous SNV	Cfap44:NM_001033247:exon16:c.A1864G:p.T622A	16qB4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.941144	AAC	nonsynonymous	A	5	AAAAA	NA
M3	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	214	88	17	0.193181818	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr16	49091132	12A2p6	cell line	sgMsh2	49091132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon10:c.T926C:p.V309A	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	49163139	12A2p6	cell line	sgMsh2	49163139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	70	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon32:c.A4616G:p.E1539G	16qB5	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9971411	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr16	56188338	12A2p6	cell line	sgMsh2	56188338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	103	53	11	0.20754717	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_025483:exon24:c.T3080C:p.L1027P,Senp7:NM_001360073:exon25:c.T2882C:p.L961P"	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	172	1	1	1	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999941	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	81	256	63	0.24609375	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9985308	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr16	57570454	12A2p6	cell line	sgMsh2	57570454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	109	104	18	0.173076923	exonic	Filip1l	nonsynonymous SNV	"Filip1l:NM_001177871:exon2:c.A690C:p.K230N,Filip1l:NM_001040397:exon5:c.A1404C:p.K468N"	16qC1.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9997099	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	162	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.835055165	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr16	59201814	12A2p6	cell line	sgMsh2	59201814	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	194	0	0	NA	exonic	Olfr198	nonsynonymous SNV	Olfr198:NM_001011808:exon1:c.C611A:p.A204D	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9985872	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.414	75	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M3	chr16	65523621	12A2p6	cell line	sgMsh2	65523621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	126	0	0	NA	exonic	Pou1f1	synonymous SNV	"Pou1f1:NM_001362468:exon1:c.T171C:p.Y57Y,Pou1f1:NM_008849:exon2:c.T201C:p.Y67Y"	16qC1.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	ATG	synonymous	NA	NA	NA	NA
M3	chr16	77080387	12A2p6	cell line	sgMsh2	77080387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	94	100	14	0.14	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon15:c.T1760C:p.M587T	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.8012281	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr16	77081501	12A2p6	cell line	sgMsh2	77081501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	61	75	16	0.213333333	exonic	Usp25	synonymous SNV	Usp25:NM_013918:exon16:c.T1812C:p.A604A	16qC3.1	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	CTA	synonymous	NA	NA	NA	NA
M3	chr16	81437723	12A2p6	cell line	sgMsh2	81437723	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	95	0	0	NA	exonic	Ncam2	synonymous SNV	"Ncam2:NM_001113208:exon4:c.C465A:p.V155V,Ncam2:NM_010954:exon4:c.C465A:p.V155V"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9969682	TCA	synonymous	CAC	8	CACCACCA	NA
M3	chr16	85550087	12A2p6	cell line	sgMsh2	85550087	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	28	0	0	NA	exonic	Cyyr1	nonsynonymous SNV	Cyyr1:NM_144853:exon1:c.C22T:p.R8W	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9646755	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr16	87382636	12A2p6	cell line	sgMsh2	87382636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	86	129	32	0.248062016	exonic	Ltn1	nonsynonymous SNV	Ltn1:NM_001081068:exon26:c.G4636A:p.E1546K	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr16	87408812	12A2p6	cell line	sgMsh2	87408812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	151	159	43	0.270440252	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon16:c.A2964G:p.Q988Q	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9997422	CTT	synonymous	NA	NA	NA	NA
M3	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	104	478	87	0.182008368	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr16	88707383	12A2p6	cell line	sgMsh2	88707383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	78	0	0	NA	exonic	2310061N02Rik	stoploss	2310061N02Rik:NM_027155:exon1:c.A525C:p.X175C	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr16	90950413	12A2p6	cell line	sgMsh2	90950413	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	54	8	1	0.125	exonic	Synj1	frameshift deletion	"Synj1:NM_001045515:exon25:c.3320delC:p.P1107Lfs*48,Synj1:NM_001164483:exon25:c.3440delC:p.P1147Lfs*46"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	151	11	1	0.090909091	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9999479	CGC	synonymous	NA	NA	NA	NA
M3	chr16	91658299	12A2p6	cell line	sgMsh2	91658299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	286	71	0.248251748	exonic	Son	synonymous SNV	"Son:NM_019973:exon3:c.T3933C:p.H1311H,Son:NM_178880:exon3:c.T3933C:p.H1311H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999985	ATG	synonymous	NA	NA	NA	NA
M3	chr16	94686583	12A2p6	cell line	sgMsh2	94686583	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	65	32	11	0.34375	exonic	Dyrk1a	nonsynonymous SNV	"Dyrk1a:NM_001347731:exon10:c.T1624G:p.C542G,Dyrk1a:NM_001113389:exon11:c.T1651G:p.C551G,Dyrk1a:NM_007890:exon11:c.T1651G:p.C551G"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9961324	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	172	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999941	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr16	95409768	12A2p6	cell line	sgMsh2	95409768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	51	0	0	NA	exonic	Erg	nonsynonymous SNV	"Erg:NM_001302153:exon2:c.T203C:p.M68T,Erg:NM_001302154:exon2:c.T203C:p.M68T,Erg:NM_001302179:exon3:c.T224C:p.M75T,Erg:NM_001302183:exon3:c.T224C:p.M75T,Erg:NM_133659:exon3:c.T224C:p.M75T,Erg:NM_001302152:exon4:c.T224C:p.M75T"	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	2	1	1	0.9910065	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr16	96608180	12A2p6	cell line	sgMsh2	96608180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	147	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon32:c.A5542G:p.T1848A	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999731	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr16	96648186	12A2p6	cell line	sgMsh2	96648186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	152	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon24:c.A4211G:p.N1404S	16qC4	chr16-4630421-97886207	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999802	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr16	97950887	12A2p6	cell line	sgMsh2	97950887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	38	16	3	0.1875	exonic	Zbtb21	nonsynonymous SNV	"Zbtb21:NM_001081684:exon2:c.A2195G:p.K732R,Zbtb21:NM_175428:exon3:c.A2279G:p.K760R"	16qC4	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	7236056	12A2p6	cell line	sgMsh2	7236056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	64	23	3	0.130434783	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon3:c.T227C:p.V76A	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	7292827	12A2p6	cell line	sgMsh2	7292827	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	116	27	5	0.185185185	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon17:c.T1663A:p.F555I	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	7771665	12A2p6	cell line	sgMsh2	7771665	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	81	0	0	NA	exonic	Fndc1	synonymous SNV	Fndc1:NM_001081416:exon9:c.C3345A:p.A1115A	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	TGG	synonymous	NA	NA	NA	NA
M3	chr17	7805009	12A2p6	cell line	sgMsh2	7805009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	118	0	0	NA	exonic	Fndc1	nonsynonymous SNV	Fndc1:NM_001081416:exon2:c.T113C:p.L38P	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.5989945	CAG	nonsynonymous	GTGG	8	GTGGGTGG	NA
M3	chr17	9005207	12A2p6	cell line	sgMsh2	9005207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	76	0	0	NA	exonic	1700010I14Rik	synonymous SNV	"1700010I14Rik:NM_001347544:exon8:c.T1291C:p.L431L,1700010I14Rik:NM_025851:exon8:c.T1291C:p.L431L"	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	GTT	synonymous	NA	NA	NA	NA
M3	chr17	9668533	12A2p6	cell line	sgMsh2	9668533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	120	0	0	NA	exonic	Pabpc6	nonsynonymous SNV	Pabpc6:NM_001163836:exon1:c.T1088C:p.M363T	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.5940664	CAT	nonsynonymous	CATT	8	CATTCATT	NA
M3	chr17	12662768	12A2p6	cell line	sgMsh2	12662768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	93	0	0	NA	exonic	Slc22a1	nonsynonymous SNV	Slc22a1:NM_009202:exon5:c.T953C:p.L318P	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.693738137	2	0.8263296	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	13225560	12A2p6	cell line	sgMsh2	13225560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	299	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A23G:p.K8R	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.633785458	2	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	773	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.543856441	2	1.46E-09	CCT	synonymous	NA	NA	NA	NA
M3	chr17	13226786	12A2p6	cell line	sgMsh2	13226786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	586	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A1249G:p.T417A	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.548138775	2	1.67E-08	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	13888230	12A2p6	cell line	sgMsh2	13888230	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	136	160	32	0.2	exonic	Afdn	synonymous SNV	Afdn:NM_010806:exon29:c.T4059A:p.P1353P	17qA1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	CTG	synonymous	NA	NA	NA	NA
M3	chr17	14344349	12A2p6	cell line	sgMsh2	14344349	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	1	0	0	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon5:c.G486A:p.P162P	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9415555	CGC	synonymous	NA	NA	NA	NA
M3	chr17	14670751	12A2p6	cell line	sgMsh2	14670751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon19:c.T3116C:p.V1039A	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9805108	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	14685891	12A2p6	cell line	sgMsh2	14685891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	86	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon5:c.A746G:p.H249R	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9929198	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	15402427	12A2p6	cell line	sgMsh2	15402427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	104	58	12	0.206896552	exonic	Fam120b	synonymous SNV	"Fam120b:NM_001357822:exon2:c.T666C:p.L222L,Fam120b:NM_024203:exon2:c.T666C:p.L222L"	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.09997111	TTC	synonymous	NA	NA	NA	NA
M3	chr17	15423082	12A2p6	cell line	sgMsh2	15423082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	105	60	6	0.1	exonic	Fam120b	nonsynonymous SNV	"Fam120b:NM_001357822:exon7:c.A2122G:p.N708D,Fam120b:NM_024203:exon7:c.A2122G:p.N708D"	17qA2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9992612	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	17537014	12A2p6	cell line	sgMsh2	17537014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	135	67	12	0.179104478	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon15:c.T2623C:p.L875L	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9962838	AAC	synonymous	NA	NA	NA	NA
M3	chr17	17733596	12A2p6	cell line	sgMsh2	17733596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	200	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2021G:p.K674R	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9999772	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	18243723	12A2p6	cell line	sgMsh2	18243723	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	303	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A2304C:p.E768D	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	3.09E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	18305080	12A2p6	cell line	sgMsh2	18305080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	165	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon3:c.T999C:p.F333F	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.999991	TTA	synonymous	NA	NA	NA	NA
M3	chr17	18325841	12A2p6	cell line	sgMsh2	18325841	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	561	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon6:c.T1974G:p.A658A	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1	CTT	synonymous	NA	NA	NA	NA
M3	chr17	18582393	12A2p6	cell line	sgMsh2	18582393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.541	139	0	0	NA	exonic	Vmn2r96	synonymous SNV	Vmn2r96:NM_001385081:exon3:c.T564C:p.P188P	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999563	CTT	synonymous	NA	NA	NA	NA
M3	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	120	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9998241	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.257	272	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1.47E-08	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr17	19066034	12A2p6	cell line	sgMsh2	19066034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	362	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A793G:p.M265V	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1.06E-09	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	19080947	12A2p6	cell line	sgMsh2	19080947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	460	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon6:c.A2210G:p.N737S	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	19522553	12A2p6	cell line	sgMsh2	19522553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	254	0	0	NA	exonic	Vmn2r100	synonymous SNV	Vmn2r100:NM_001104562:exon3:c.G1188A:p.E396E	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	4.19E-08	AGA	synonymous	NA	NA	NA	NA
M3	chr17	19577445	12A2p6	cell line	sgMsh2	19577445	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	93	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon1:c.T215A:p.I72K	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr17	20030036	12A2p6	cell line	sgMsh2	20030036	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.22	534	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.T1972C:p.F658L	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	20030038	12A2p6	cell line	sgMsh2	20030038	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.22	534	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.C1970A:p.T657N	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	1.02E-09	GGT	nonsynonymous	NA	NA	NA	NA
M3	chr17	20047997	12A2p6	cell line	sgMsh2	20047997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon1:c.A209G:p.Y70C	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr17	20470994	12A2p6	cell line	sgMsh2	20470994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	150	0	0	NA	exonic	Vmn2r108	nonsynonymous SNV	Vmn2r108:NM_001104570:exon3:c.A1266C:p.K422N	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999776	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	20502730	12A2p6	cell line	sgMsh2	20502730	T	-	Deletion	Strelka2;Vardict	2	0.2437	160	0	0	NA	exonic	Vmn1r225	frameshift deletion	Vmn1r225:NM_134194:exon1:c.432delT:p.P147Lfs*1	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr17	20502847	12A2p6	cell line	sgMsh2	20502847	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.287	171	0	0	NA	exonic	Vmn1r225	frameshift insertion	Vmn1r225:NM_134194:exon1:c.550dupT:p.W185Lfs*4	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAT	frameshift	NA	NA	NA	1
M3	chr17	20541410	12A2p6	cell line	sgMsh2	20541410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	117	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.T1684C:p.Y562H	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.998655	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	20574454	12A2p6	cell line	sgMsh2	20574454	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.266	223	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon6:c.T1952G:p.L651R	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	20960476	12A2p6	cell line	sgMsh2	20960476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	139	427	90	0.210772834	exonic	Ppp2r1a	nonsynonymous SNV	Ppp2r1a:NM_016891:exon10:c.T1139C:p.V380A	17qA3.2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.732279145	2	0.8131531	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	21823844	12A2p6	cell line	sgMsh2	21823844	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	91	12	0	0	exonic	Zfp820	nonsynonymous SNV	Zfp820:NM_029281:exon3:c.G30T:p.Q10H	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	22146436	12A2p6	cell line	sgMsh2	22146436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	172	7	0	0	exonic	Zfp947	nonsynonymous SNV	Zfp947:NM_177596:exon5:c.T256C:p.C86R	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9984296	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	22573115	12A2p6	cell line	sgMsh2	22573115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	305	0	0	NA	exonic	Vmn2r111	synonymous SNV	Vmn2r111:NM_001104573:exon1:c.T159A:p.P53P	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.672326466	2	0.9999797	CAG	synonymous	NA	NA	NA	NA
M3	chr17	22602492	12A2p6	cell line	sgMsh2	22602492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	221	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.A445G:p.T149A	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.586679782	2	0.9999919	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	24185323	12A2p6	cell line	sgMsh2	24185323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	97	14	1	0.071428571	exonic	Tbc1d24	synonymous SNV	"Tbc1d24:NM_001163847:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163848:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163849:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163850:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163851:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163853:exon3:c.T846C:p.P282P,Tbc1d24:NM_173186:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163852:exon4:c.T846C:p.P282P"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	CAG	synonymous	NA	NA	NA	NA
M3	chr17	24681426	12A2p6	cell line	sgMsh2	24681426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.11	58	69	12	0.173913043	exonic	Zfp598	frameshift deletion	"Zfp598:NM_001348231:exon12:c.2682delC:p.S896Pfs*14,Zfp598:NM_183149:exon12:c.2691delC:p.S899Pfs*14"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.47105676	NA	NA	TCC	frameshift	CCCT	8	CCCTCCCT	-1
M3	chr17	24887906	12A2p6	cell line	sgMsh2	24887906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	60	31	3	0.096774194	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon2:c.T553C:p.S185P,Spsb3:NM_001163751:exon2:c.T208C:p.S70P,Spsb3:NM_001374602:exon2:c.T115C:p.S39P,Spsb3:NM_027141:exon2:c.T220C:p.S74P"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9947696	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	24897219	12A2p6	cell line	sgMsh2	24897219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	141	63	10	0.158730159	exonic	Nme3	nonsynonymous SNV	Nme3:NM_019730:exon5:c.T398C:p.V133A	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr17	25750133	12A2p6	cell line	sgMsh2	25750133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	1170	290	0.247863248	exonic	Msln	nonsynonymous SNV	"Msln:NM_018857:exon12:c.A1277C:p.Q426P,Msln:NM_001356286:exon13:c.A1277C:p.Q426P,Msln:NM_001374653:exon13:c.A1289C:p.Q430P"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	25875689	12A2p6	cell line	sgMsh2	25875689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	18	57	15	0.263157895	exonic	Mettl26	nonsynonymous SNV	Mettl26:NM_026686:exon1:c.T160C:p.W54R	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9369825	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	32	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.8227029	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	26939091	12A2p6	cell line	sgMsh2	26939091	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.259	26	69	7	0.101449275	exonic	Cuta	nonsynonymous SNV	Cuta:NM_026307:exon3:c.C44G:p.A15G	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9602973	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	29	3	1	0.333333333	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.966686	GAG	synonymous	NA	NA	NA	NA
M3	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	70	9	0	0	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9971411	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr17	28691801	12A2p6	cell line	sgMsh2	28691801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	38	47	8	0.170212766	exonic	Mapk14	nonsynonymous SNV	"Mapk14:NM_001168508:exon1:c.C62A:p.P21H,Mapk14:NM_011951:exon1:c.C62A:p.P21H"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9804267	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr17	28858946	12A2p6	cell line	sgMsh2	28858946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	128	0	0	NA	exonic	Pnpla1	nonsynonymous SNV	Pnpla1:NM_001034885:exon1:c.A80G:p.Y27C	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999149	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	29301434	12A2p6	cell line	sgMsh2	29301435	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	117	73	9	0.123287671	exonic	BC004004	frameshift deletion	"BC004004:NM_001379078:exon8:c.1052_1053del:p.S353Gfs*10,BC004004:NM_001379077:exon9:c.1031_1032del:p.S346Gfs*10,BC004004:NM_030561:exon9:c.1031_1032del:p.S346Gfs*10"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ACT	frameshift	NA	NA	NA	-2
M3	chr17	29526332	12A2p6	cell line	sgMsh2	29526332	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.281	113	1	0	0	exonic	Tmem217	stopgain	"Tmem217:NM_001162902:exon2:c.T423G:p.Y141X,Tmem217:NM_001162901:exon3:c.T423G:p.Y141X"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	29526335	12A2p6	cell line	sgMsh2	29526335	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.277	111	1	0	0	exonic	Tmem217	synonymous SNV	"Tmem217:NM_001162902:exon2:c.A420C:p.L140L,Tmem217:NM_001162901:exon3:c.A420C:p.L140L"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997615	ATA	synonymous	NA	NA	NA	NA
M3	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	49	4	0.081632653	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.706585139	2	0.8207657	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr17	30719001	12A2p6	cell line	sgMsh2	30719001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	107	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon35:c.A4851G:p.E1617E	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9660478	AAT	synonymous	NA	NA	NA	NA
M3	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	118	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.856466836	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr17	30875031	12A2p6	cell line	sgMsh2	30875031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	101	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon93:c.A14098C:p.T4700P	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.518162436	2	0.9750364	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	31188437	12A2p6	cell line	sgMsh2	31188437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	95	0	0	NA	exonic	Tmprss3	nonsynonymous SNV	"Tmprss3:NM_080727:exon8:c.T815C:p.V272A,Tmprss3:NM_001163776:exon9:c.T881C:p.V294A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9894112	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	31218058	12A2p6	cell line	sgMsh2	31218058	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	69	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.A648C:p.K216N	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.543856441	2	0.9642393	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	31218128	12A2p6	cell line	sgMsh2	31218128	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	47	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.T718A:p.Y240N	17qA3.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9885657	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr17	32141504	12A2p6	cell line	sgMsh2	32141504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	21	3	0	0	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.T4452C:p.R1484R	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9469504	AAC	synonymous	NA	NA	NA	NA
M3	chr17	32147336	12A2p6	cell line	sgMsh2	32147336	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.142	27	2	0	0	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon18:c.G2923A:p.G975R	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.608091453	2	0.5005691	CCG	nonsynonymous	C	5	CCCCC	NA
M3	chr17	32156258	12A2p6	cell line	sgMsh2	32156258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	116	1	1	1	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon7:c.T1189G:p.S397A	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9781572	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	32158898	12A2p6	cell line	sgMsh2	32158898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	61	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon3:c.G285A:p.Q95Q	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9746918	TCT	synonymous	NA	NA	NA	NA
M3	chr17	32305325	12A2p6	cell line	sgMsh2	32305325	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	193	172	38	0.220930233	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon12:c.A1654C:p.I552L,Akap8:NM_019774:exon14:c.A1996C:p.I666L"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9968849	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr17	32377792	12A2p6	cell line	sgMsh2	32377792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	66	14	2	0.142857143	exonic	Wiz	nonsynonymous SNV	Wiz:NM_001372227:exon3:c.C967A:p.L323I	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.535291772	2	0.9568044	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr17	33381058	12A2p6	cell line	sgMsh2	33381058	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	97	4	2	0.5	exonic	Zfp101	frameshift deletion	Zfp101:NM_009542:exon4:c.1723delA:p.I575Yfs*3	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr17	33433082	12A2p6	cell line	sgMsh2	33433082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A115G:p.M39V	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	33433109	12A2p6	cell line	sgMsh2	33433109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	49	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A142G:p.T48A	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	AAC	nonsynonymous	A	5	AAAAA	NA
M3	chr17	33538279	12A2p6	cell line	sgMsh2	33538279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	144	23	4	0.173913043	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon8:c.C9T:p.H3H,Adamts10:NM_001329143:exon9:c.C9T:p.H3H,Adamts10:NM_001329203:exon10:c.C102T:p.H34H,Adamts10:NM_172619:exon10:c.C1206T:p.H402H"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999678	ACG	synonymous	NA	NA	NA	NA
M3	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	40	74	15	0.202702703	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.9826236	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	34188199	12A2p6	cell line	sgMsh2	34188199	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	54	0	0	NA	exonic	Tap1	nonsynonymous SNV	"Tap1:NM_001161730:exon1:c.T320G:p.L107R,Tap1:NM_013683:exon1:c.T320G:p.L107R"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.9924912	CTG	nonsynonymous	TACTG	10	TACTGTACTG	NA
M3	chr17	34625876	12A2p6	cell line	sgMsh2	34625876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	131	75	16	0.213333333	exonic	Ppt2	synonymous SNV	"Ppt2:NM_019441:exon3:c.T393G:p.S131S,Ppt2:NM_001302393:exon4:c.T393G:p.S131S,Ppt2:NM_001302394:exon4:c.T393G:p.S131S,Ppt2:NM_001302395:exon4:c.T393G:p.S131S,Ppt2:NM_001302396:exon4:c.T393G:p.S131S"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9940968	AAG	synonymous	NA	NA	NA	NA
M3	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.114	37	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.488186096	2	0.812132	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	34839827	12A2p6	cell line	sgMsh2	34839827	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.156	65	58	13	0.224137931	exonic	Skiv2l	nonsynonymous SNV	Skiv2l:NM_021337:exon27:c.T3398C:p.V1133A	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.668044132	2	0.7540922	TAC	nonsynonymous	C	5	CCCCC	NA
M3	chr17	35011299	12A2p6	cell line	sgMsh2	35011299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	143	34	0.237762238	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon11:c.T1439C:p.L480P	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	35019786	12A2p6	cell line	sgMsh2	35019786	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	30	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon6:c.A849T:p.E283D,Vwa7:NM_138582:exon6:c.A849T:p.E283D"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.8602823	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	35066160	12A2p6	cell line	sgMsh2	35066160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	0	0	NA	exonic	Mpig6b	nonsynonymous SNV	"Mpig6b:NM_001033221:exon1:c.T11C:p.V4A,Mpig6b:NM_001191012:exon1:c.T11C:p.V4A"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	35082910	12A2p6	cell line	sgMsh2	35082910	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	81	0	0	NA	exonic	Ly6g6f	synonymous SNV	Ly6g6f:NM_001163192:exon3:c.G567A:p.G189G	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9937652	GCC	synonymous	NA	NA	NA	NA
M3	chr17	35637549	12A2p6	cell line	sgMsh2	35637549	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	123	1	0	0	exonic	Mucl3	stopgain	Mucl3:NM_001033366:exon2:c.T1157A:p.L386X	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.6628246	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	35659098	12A2p6	cell line	sgMsh2	35659098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	52	78	22	0.282051282	exonic	Vars2	nonsynonymous SNV	Vars2:NM_175137:exon24:c.A2398C:p.S800R	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9915312	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	35978435	12A2p6	cell line	sgMsh2	35978435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	117	21	5	0.238095238	exonic	Prr3	nonsynonymous SNV	"Prr3:NM_145487:exon2:c.A121G:p.S41G,Prr3:NM_001384114:exon3:c.A121G:p.S41G,Prr3:NM_001384116:exon3:c.A121G:p.S41G"	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.998655	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	36670141	12A2p6	cell line	sgMsh2	36670141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	133	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon5:c.A902G:p.E301G	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999372	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	36988997	12A2p6	cell line	sgMsh2	36988997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	144	0	0	NA	exonic	H2-M5	nonsynonymous SNV	H2-M5:NM_001115075:exon2:c.T284C:p.I95T	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999678	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	37197051	12A2p6	cell line	sgMsh2	37197051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	47	0	0	NA	exonic	Olfr94	nonsynonymous SNV	Olfr94:NM_001011518:exon1:c.A916G:p.S306G	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9464016	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	37270790	12A2p6	cell line	sgMsh2	37270790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	87	19	2	0.105263158	exonic	H2-M3	synonymous SNV	H2-M3:NM_013819:exon2:c.C342A:p.G114G	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	GCG	synonymous	NA	NA	NA	NA
M3	chr17	37336968	12A2p6	cell line	sgMsh2	37336968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	340	0	0	NA	exonic	Olfr103	nonsynonymous SNV	Olfr103:NM_146833:exon1:c.A263G:p.K88R	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9996763	TTT	nonsynonymous	TTTG	9	TTTGTTTGT	NA
M3	chr17	37590059	12A2p6	cell line	sgMsh2	37590059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	520	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.T293C:p.M98T	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	1.35E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr17	37590324	12A2p6	cell line	sgMsh2	37590324	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.23	271	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A28T:p.S10C	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr17	37672835	12A2p6	cell line	sgMsh2	37672835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	339	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.A811G:p.S271G	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1.24E-09	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	374	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	1.03E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M3	chr17	37923763	12A2p6	cell line	sgMsh2	37923763	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	588	0	0	NA	exonic	Olfr128	nonsynonymous SNV	Olfr128:NM_206816:exon1:c.C196A:p.L66I	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.241	175	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M3	chr17	38130501	12A2p6	cell line	sgMsh2	38130501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	174	0	0	NA	exonic	Olfr132	synonymous SNV	Olfr132:NM_001005481:exon1:c.A690G:p.S230S	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.5717192	GTG	synonymous	NA	NA	NA	NA
M3	chr17	38148878	12A2p6	cell line	sgMsh2	38148878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	281	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.T289C:p.C97R	17qB1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	8.95E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	329	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9993841	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	40783774	12A2p6	cell line	sgMsh2	40783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	148	0	0	NA	exonic	Crisp2	nonsynonymous SNV	"Crisp2:NM_001204071:exon7:c.T409C:p.Y137H,Crisp2:NM_009420:exon7:c.T409C:p.Y137H"	17qB2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9998896	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	40880525	12A2p6	cell line	sgMsh2	40880525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	32	3	1	0.333333333	exonic	9130008F23Rik	synonymous SNV	9130008F23Rik:NM_027834:exon1:c.A12G:p.L4L	17qB2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9332507	GTA	synonymous	NA	NA	NA	NA
M3	chr17	42834239	12A2p6	cell line	sgMsh2	42834239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	72	483	128	0.265010352	exonic	Cd2ap	nonsynonymous SNV	Cd2ap:NM_009847:exon5:c.T467G:p.L156R	17qB3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9853691	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr17	43487197	12A2p6	cell line	sgMsh2	43487197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	221	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon8:c.A706G:p.S236G	17qB3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	46241457	12A2p6	cell line	sgMsh2	46241457	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	43	53	0	0	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon30:c.3215delT:p.F1073Sfs*4	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	73	2	2	1	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr17	46306582	12A2p6	cell line	sgMsh2	46306582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	37	10	1	0.1	exonic	Abcc10	synonymous SNV	"Abcc10:NM_145140:exon14:c.C3403T:p.L1135L,Abcc10:NM_001347396:exon15:c.C3526T:p.L1176L,Abcc10:NM_170680:exon15:c.C3526T:p.L1176L"	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.8717202	AGG	synonymous	NA	NA	NA	NA
M3	chr17	46310518	12A2p6	cell line	sgMsh2	46310518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	62	5	0	0	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon11:c.G2585T:p.G862V,Abcc10:NM_001347396:exon12:c.G2708T:p.G903V,Abcc10:NM_170680:exon12:c.G2708T:p.G903V"	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9953642	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr17	46579147	12A2p6	cell line	sgMsh2	46579147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	64	102	30	0.294117647	exonic	Ptk7	synonymous SNV	Ptk7:NM_175168:exon10:c.A1497G:p.P499P	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	GTG	synonymous	GGT	8	GGTGGTGG	NA
M3	chr17	46801131	12A2p6	cell line	sgMsh2	46801131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	79	54	19	0.351851852	exonic	Bicral	nonsynonymous SNV	Bicral:NM_001100452:exon11:c.A3142G:p.K1048E	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.75797315	1	0.6193167	TTT	nonsynonymous	T	5	TTTTT	NA
M3	chr17	49459065	12A2p6	cell line	sgMsh2	49459065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	23	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001379372:exon24:c.T2970C:p.R990R,Daam2:NM_001008231:exon25:c.T3114C:p.R1038R,Daam2:NM_001379371:exon25:c.T3054C:p.R1018R"	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.9527374	TAC	synonymous	NA	NA	NA	NA
M3	chr17	49471978	12A2p6	cell line	sgMsh2	49471978	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	0	0	NA	exonic	Daam2	nonsynonymous SNV	"Daam2:NM_001379372:exon17:c.G2130T:p.K710N,Daam2:NM_001008231:exon18:c.G2274T:p.K758N,Daam2:NM_001379371:exon18:c.G2214T:p.K738N"	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	52893952	12A2p6	cell line	sgMsh2	52893952	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.223	135	0	0	NA	exonic	Kcnh8	frameshift insertion	Kcnh8:NM_001031811:exon9:c.1414dupA:p.I472Nfs*7	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.954960522	NA	NA	CCA	frameshift	NA	NA	NA	1
M3	chr17	53401448	12A2p6	cell line	sgMsh2	53401448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	73	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon11:c.T2193C:p.A731A	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8727538	CAG	synonymous	NA	NA	NA	NA
M3	chr17	53679523	12A2p6	cell line	sgMsh2	53679523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	45	8	0.177777778	exonic	Sgo1	synonymous SNV	Sgo1:NM_028232:exon7:c.A639G:p.A213A	17qC	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	GTG	synonymous	NA	NA	NA	NA
M3	chr17	56270628	12A2p6	cell line	sgMsh2	56270628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	89	18	5	0.277777778	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.T1466C:p.I489T	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.999095	GAT	nonsynonymous	G	5	GGGGG	NA
M3	chr17	56271980	12A2p6	cell line	sgMsh2	56271980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	37	13	4	0.307692308	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.G114T:p.Q38H	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.753690815	1	0.7375431	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	114	1	1	1	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9962261	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr17	57053216	12A2p6	cell line	sgMsh2	57053216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	49	0	0	NA	exonic	Slc25a23	nonsynonymous SNV	"Slc25a23:NM_001379067:exon7:c.A925G:p.I309V,Slc25a23:NM_001379068:exon7:c.A925G:p.I309V"	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	1	0.9898585	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr17	57220993	12A2p6	cell line	sgMsh2	57220993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	109	52	11	0.211538462	exonic	C3	nonsynonymous SNV	C3:NM_009778:exon17:c.A2225G:p.H742R	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997307	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	57420469	12A2p6	cell line	sgMsh2	57420469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	104	0	0	NA	exonic	Adgre1	synonymous SNV	"Adgre1:NM_001355722:exon12:c.T1398C:p.A466A,Adgre1:NM_001355723:exon12:c.T1350C:p.A450A,Adgre1:NM_010130:exon12:c.T1398C:p.A466A"	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	CTG	synonymous	NA	NA	NA	NA
M3	chr17	57522504	12A2p6	cell line	sgMsh2	57522504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	185	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon4:c.A1374T:p.K458N,Vmn2r120:NM_001104591:exon5:c.A1392T:p.K464N"	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999973	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	58294347	12A2p6	cell line	sgMsh2	58294347	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	157	0	0	NA	exonic	Cntnap5c	frameshift deletion	Cntnap5c:NM_001081653:exon16:c.2489delA:p.I831Sfs*11	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr17	58313752	12A2p6	cell line	sgMsh2	58313752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	178	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.T2825C:p.L942P	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999959	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	58973352	12A2p6	cell line	sgMsh2	58973352	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	120	0	0	NA	exonic	Pdzph1	nonsynonymous SNV	Pdzph1:NM_027001:exon3:c.G1934T:p.R645I	17qD	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9873105	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr17	66685624	12A2p6	cell line	sgMsh2	66685624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	94	2	0	0	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon28:c.A3995G:p.N1332S,Ptprm:NM_001357625:exon30:c.A4097G:p.N1366S"	17qE1.1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	67756754	12A2p6	cell line	sgMsh2	67756754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	66	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon16:c.T2272C:p.C758R	17qE1.1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9642173	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	67763827	12A2p6	cell line	sgMsh2	67763827	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	129	0	0	NA	exonic	Lama1	frameshift deletion	Lama1:NM_008480:exon18:c.2480delC:p.P828Rfs*50	17qE1.1	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr17	69388393	12A2p6	cell line	sgMsh2	69388393	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	222	63	14	0.222222222	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.C1085T:p.A362V,Zbtb14:NM_001356283:exon3:c.C1085T:p.A362V,Zbtb14:NM_009547:exon3:c.C1085T:p.A362V"	17qE1.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr17	71578139	12A2p6	cell line	sgMsh2	71578139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	105	2	1	0.5	exonic	Spdya	nonsynonymous SNV	"Spdya:NM_001142631:exon6:c.G587A:p.R196Q,Spdya:NM_029254:exon6:c.G587A:p.R196Q"	17qE1.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9985202	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr17	71828569	12A2p6	cell line	sgMsh2	71828569	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	42	0	0	NA	exonic	Clip4	frameshift deletion	"Clip4:NM_175378:exon10:c.1174delT:p.Y392Tfs*4,Clip4:NM_001271483:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_001271484:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_030179:exon11:c.1315delT:p.Y439Tfs*4"	17qE1.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	CTA	frameshift	NA	NA	NA	-1
M3	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.345	13	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3	chr17	73816404	12A2p6	cell line	sgMsh2	73816404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	56	0	0	NA	exonic	Ehd3	nonsynonymous SNV	Ehd3:NM_020578:exon2:c.A401G:p.N134S	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.569550446	2	0.9097104	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	73943875	12A2p6	cell line	sgMsh2	73943875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	142	0	0	NA	exonic	Xdh	synonymous SNV	Xdh:NM_011723:exon2:c.A81T:p.T27T	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7494987	TTG	synonymous	NA	NA	NA	NA
M3	chr17	74634868	12A2p6	cell line	sgMsh2	74634868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	68	64	20	0.3125	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon42:c.T8210C:p.L2737P	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9429193	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	74668815	12A2p6	cell line	sgMsh2	74668815	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	48	45	14	0.311111111	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon63:c.G12912T:p.W4304C	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr17	74840305	12A2p6	cell line	sgMsh2	74840305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	98	91	23	0.252747253	exonic	Ttc27	synonymous SNV	Ttc27:NM_152817:exon16:c.A1851G:p.K617K	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994755	AAG	synonymous	NA	NA	NA	NA
M3	chr17	75282990	12A2p6	cell line	sgMsh2	75282990	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	165	182	67	0.368131868	exonic	Ltbp1	nonsynonymous SNV	"Ltbp1:NM_001331233:exon11:c.C1608A:p.S536R,Ltbp1:NM_001331234:exon11:c.C1611A:p.S537R,Ltbp1:NM_001331235:exon11:c.C1449A:p.S483R,Ltbp1:NM_001331236:exon11:c.C1452A:p.S484R,Ltbp1:NM_001331237:exon11:c.C1452A:p.S484R,Ltbp1:NM_206958:exon11:c.C1611A:p.S537R,Ltbp1:NM_019919:exon15:c.C2565A:p.S855R"	17qE2	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9999625	GCC	nonsynonymous	GCCA	8	GCCAGCCA	NA
M3	chr17	78951959	12A2p6	cell line	sgMsh2	78951959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	138	131	29	0.221374046	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon18:c.T2286C:p.S762S,Prkd3:NM_001171004:exon19:c.T2571C:p.S857S,Prkd3:NM_029239:exon19:c.T2568C:p.S856S"	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	CAC	synonymous	CAT	8	CATCATCA	NA
M3	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	122	114	33	0.289473684	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.993608	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr17	79865139	12A2p6	cell line	sgMsh2	79865139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	114	109	19	0.174311927	exonic	Atl2	nonsynonymous SNV	"Atl2:NM_001357752:exon3:c.T401C:p.L134S,Atl2:NM_001357753:exon3:c.T401C:p.L134S,Atl2:NM_019717:exon3:c.T401C:p.L134S"	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9997092	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr17	80216772	12A2p6	cell line	sgMsh2	80216772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	218	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.T859C:p.Y287H	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999996	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr17	80433721	12A2p6	cell line	sgMsh2	80433721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	67	53	14	0.264150943	exonic	Sos1	nonsynonymous SNV	Sos1:NM_009231:exon10:c.A1634T:p.Q545L	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.7504235	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	80644808	12A2p6	cell line	sgMsh2	80644808	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	51	106	28	0.264150943	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon9:c.G568A:p.G190R,Map4k3:NM_001360278:exon9:c.G568A:p.G190R"	17qE3	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr17	84692924	12A2p6	cell line	sgMsh2	84692924	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	87	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon5:c.A530T:p.Y177F,Abcg8:NM_001347418:exon6:c.A908T:p.Y303F,Abcg8:NM_026180:exon6:c.A911T:p.Y304F"	17qE4	chr17-3079405-87650787	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.3	52	26	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	3	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M3	chr17	87679897	12A2p6	cell line	sgMsh2	87679897	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	495	90	5	0.055555556	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.T464A:p.V155D	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.359716071	3	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr17	87679899	12A2p6	cell line	sgMsh2	87679899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	496	99	3	0.03030303	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.G466A:p.D156N	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.423951084	3	0.9999897	TGA	nonsynonymous	NA	NA	NA	NA
M3	chr17	87717667	12A2p6	cell line	sgMsh2	87717667	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	349	61	1	0.016393443	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon12:c.G1972A:p.E658K	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.423951084	3	0.999385	TGA	nonsynonymous	A	5	AAAAA	NA
M3	chr17	87718777	12A2p6	cell line	sgMsh2	87718777	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	278	67	2	0.029850746	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon13:c.G2182A:p.E728K	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.47105676	2	0.5830078	TGA	nonsynonymous	NA	NA	NA	NA
M3	chr17	87720926	12A2p6	cell line	sgMsh2	87720926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	200	81	8	0.098765432	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon15:c.T2502C:p.A834A	17qE4	chr17-87672302-87723786	9.53162491	5.53162491	4	0.96	4.111040811	NA	1	0.513880101	2	0.9905744	CTA	synonymous	NA	NA	NA	NA
M3	chr17	88636058	12A2p6	cell line	sgMsh2	88636058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	140	44	0.314285714	exonic	Ston1	synonymous SNV	Ston1:NM_029858:exon2:c.T891C:p.P297P	17qE4	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	CTG	synonymous	NA	NA	NA	NA
M3	chr17	88636398	12A2p6	cell line	sgMsh2	88636398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	216	47	0.217592593	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon2:c.T1231A:p.C411S	17qE4	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9458699	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr17	88742385	12A2p6	cell line	sgMsh2	88742385	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.199	141	0	0	NA	exonic	Lhcgr	frameshift insertion	Lhcgr:NM_013582:exon11:c.1711dupA:p.I571Nfs*2	17qE4	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	0.852184501	NA	NA	AAT	frameshift	T	5	TTTTT	1
M3	chr17	90037207	12A2p6	cell line	sgMsh2	90037207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T290C:p.V97A,Nrxn1:NM_001347419:exon3:c.T299C:p.V100A,Nrxn1:NM_001346960:exon6:c.T1187C:p.V396A,Nrxn1:NM_001346961:exon6:c.T1178C:p.V393A,Nrxn1:NM_001346958:exon7:c.T1268C:p.V423A,Nrxn1:NM_001346959:exon7:c.T1277C:p.V426A,Nrxn1:NM_001346957:exon19:c.T4253C:p.V1418A,Nrxn1:NM_177284:exon21:c.T4358C:p.V1453A,Nrxn1:NM_020252:exon23:c.T4394C:p.V1465A"	17qE5	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr17	90162281	12A2p6	cell line	sgMsh2	90162281	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	82	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346960:exon4:c.G754A:p.V252M,Nrxn1:NM_001346961:exon4:c.G754A:p.V252M,Nrxn1:NM_001346958:exon5:c.G844A:p.V282M,Nrxn1:NM_001346959:exon5:c.G844A:p.V282M,Nrxn1:NM_001346957:exon17:c.G3820A:p.V1274M,Nrxn1:NM_177284:exon19:c.G3925A:p.V1309M,Nrxn1:NM_020252:exon21:c.G3961A:p.V1321M"	17qE5	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9592691	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr17	90630126	12A2p6	cell line	sgMsh2	90630126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	74	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon8:c.T1878C:p.A626A,Nrxn1:NM_177284:exon8:c.T1866C:p.A622A,Nrxn1:NM_020252:exon10:c.T1902C:p.A634A"	17qE5	chr17-87745782-94740433	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	GAG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
M3	chr18	5766932	12A2p6	cell line	sgMsh2	5766932	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	61	43	5	0.11627907	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.A1274C:p.N425T,Zeb1:NM_011546:exon6:c.A1442C:p.N481T,Zeb1:NM_001360981:exon7:c.A1391C:p.N464T"	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9950758	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	10510716	12A2p6	cell line	sgMsh2	10510716	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	74	3	0	0	exonic	Greb1l	synonymous SNV	Greb1l:NM_001083628:exon13:c.G1809A:p.K603K	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	1	0.9977555	AGG	synonymous	NA	NA	NA	NA
M3	chr18	10515208	12A2p6	cell line	sgMsh2	10515208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	34	2	0	0	exonic	Greb1l	nonsynonymous SNV	Greb1l:NM_001083628:exon15:c.A1999G:p.T667A	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9751858	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	101	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995627	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr18	13015915	12A2p6	cell line	sgMsh2	13015915	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	181	0	0	NA	exonic	Hrh4	nonsynonymous SNV	Hrh4:NM_153087:exon2:c.T333G:p.D111E	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999966	ATC	nonsynonymous	CGAT	8	CGATCGAT	NA
M3	chr18	16601669	12A2p6	cell line	sgMsh2	16601669	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	107	0	0	NA	exonic	Cdh2	synonymous SNV	Cdh2:NM_007664:exon15:c.C2467A:p.R823R	18qA1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.999696	CGG	synonymous	NA	NA	NA	NA
M3	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	84	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9987749	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr18	21148087	12A2p6	cell line	sgMsh2	21148087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	178	19	0	0	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1211G:p.H404R	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	0.428233418	3	0.09137074	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr18	22524051	12A2p6	cell line	sgMsh2	22524051	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	43	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.A5117T:p.N1706I	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	1	0.9854722	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	22920873	12A2p6	cell line	sgMsh2	22920873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	69	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon4:c.T362C:p.I121T,Nol4:NM_001347509:exon4:c.T581C:p.I194T,Nol4:NM_001347510:exon4:c.T581C:p.I194T,Nol4:NM_199024:exon4:c.T581C:p.I194T,Nol4:NM_001361223:exon5:c.T116C:p.I39T,Nol4:NM_001361224:exon5:c.T116C:p.I39T,Nol4:NM_001361225:exon5:c.T116C:p.I39T"	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9969629	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	85	5	1	0.2	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9988469	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr18	24121713	12A2p6	cell line	sgMsh2	24121713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	17	15	4	0.266666667	exonic	Ino80c	nonsynonymous SNV	Ino80c:NM_172625:exon1:c.A89G:p.N30S	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9332787	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr18	25056341	12A2p6	cell line	sgMsh2	25056342	AG	-	Deletion	Strelka2;Vardict	2	0.2	55	0	0	NA	exonic	Fhod3	frameshift deletion	"Fhod3:NM_001289654:exon12:c.1386_1387del:p.E465Gfs*48,Fhod3:NM_001289655:exon13:c.1743_1744del:p.E584Gfs*48,Fhod3:NM_175276:exon14:c.1839_1840del:p.E616Gfs*48"	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	0.856466836	NA	NA	AAG	frameshift	AG	10	AGAGAGAGAG	-2
M3	chr18	25112562	12A2p6	cell line	sgMsh2	25112562	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	60	1	0	0	exonic	Fhod3	nonsynonymous SNV	"Fhod3:NM_001289654:exon19:c.T3215G:p.L1072R,Fhod3:NM_001289655:exon20:c.T3572G:p.L1191R,Fhod3:NM_175276:exon21:c.T3668G:p.L1223R"	18qA2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9947696	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr18	31896740	12A2p6	cell line	sgMsh2	31896740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	59	36	16	0.444444444	exonic	Wdr33	synonymous SNV	Wdr33:NM_028866:exon18:c.T2991C:p.R997R	18qB1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9944444	GTG	synonymous	NA	NA	NA	NA
M3	chr18	33876985	12A2p6	cell line	sgMsh2	33876985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	85	106	44	0.41509434	exonic	Epb41l4a	nonsynonymous SNV	Epb41l4a:NM_013512:exon8:c.C566A:p.P189H	18qB1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9988469	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr18	34448073	12A2p6	cell line	sgMsh2	34448073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	67	82	35	0.426829268	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon17:c.A2035G:p.R679G	18qB1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9965726	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	60	82	28	0.341463415	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9947696	TAC	synonymous	T	5	TTTTT	NA
M3	chr18	36529735	12A2p6	cell line	sgMsh2	36529735	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	107	2	1	0.5	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_001271544:exon4:c.A542T:p.K181M,Slc4a9:NM_001271545:exon4:c.A542T:p.K181M,Slc4a9:NM_001271546:exon4:c.A542T:p.K181M,Slc4a9:NM_001271547:exon4:c.A542T:p.K181M,Slc4a9:NM_172830:exon4:c.A542T:p.K181M"	18qB2	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.999696	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	37344002	12A2p6	cell line	sgMsh2	37344002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	151	0	0	NA	exonic	Pcdhb7	synonymous SNV	Pcdhb7:NM_053132:exon1:c.A2190G:p.V730V	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999789	TAT	synonymous	NA	NA	NA	NA
M3	chr18	37355814	12A2p6	cell line	sgMsh2	37355814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	95	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.A544G:p.T182A	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	1	0.9993709	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	37357271	12A2p6	cell line	sgMsh2	37357271	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	221	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.G2001T:p.Q667H	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr18	37421758	12A2p6	cell line	sgMsh2	37421758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	246	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.A140G:p.N47S	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	37485357	12A2p6	cell line	sgMsh2	37485357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	54	1	0	0	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.A199G:p.I67V	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9924912	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr18	37515443	12A2p6	cell line	sgMsh2	37515443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	211	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1624G:p.S542G	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	37676455	12A2p6	cell line	sgMsh2	37676455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	63	0	0	NA	exonic	Pcdhga3	nonsynonymous SNV	Pcdhga3:NM_033586:exon1:c.A1960G:p.T654A	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9956358	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.629	158	5	5	1	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	1	0.9999862	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr18	37756153	12A2p6	cell line	sgMsh2	37756153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	82	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A213G:p.Q71Q	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986171	AAT	synonymous	NA	NA	NA	NA
M3	chr18	37816197	12A2p6	cell line	sgMsh2	37816197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	53	2	0	0	exonic	Pcdhgc4	nonsynonymous SNV	Pcdhgc4:NM_033582:exon1:c.A665G:p.N222S	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	AAC	nonsynonymous	C	5	CCCCC	NA
M3	chr18	37820769	12A2p6	cell line	sgMsh2	37820769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	78	3	3	1	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1095G:p.V365V	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9982381	TAG	synonymous	NA	NA	NA	NA
M3	chr18	41986686	12A2p6	cell line	sgMsh2	41986686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	45	0	0	NA	exonic	Grxcr2	synonymous SNV	Grxcr2:NM_001033426:exon3:c.T588C:p.D196D	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9871102	CAT	synonymous	NA	NA	NA	NA
M3	chr18	43781252	12A2p6	cell line	sgMsh2	43781252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	62	0	0	NA	exonic	Gm94	synonymous SNV	Gm94:NM_001033280:exon3:c.T240C:p.L80L	18qB3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	CAA	synonymous	NA	NA	NA	NA
M3	chr18	46905292	12A2p6	cell line	sgMsh2	46905292	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	131	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon20:c.C2912T:p.T971M	18qC	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999291	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr18	47248675	12A2p6	cell line	sgMsh2	47248675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	68	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.T2639C:p.L880P,Sema6a:NM_018744:exon19:c.T2804C:p.L935P"	18qC	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9967736	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	52520854	12A2p6	cell line	sgMsh2	52520854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	103	0	0	NA	exonic	Lox	nonsynonymous SNV	"Lox:NM_010728:exon6:c.T1169C:p.V390A,Lox:NM_001286181:exon7:c.T1169C:p.V390A,Lox:NM_001286182:exon7:c.T1169C:p.V390A"	18qD1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996126	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	56749782	12A2p6	cell line	sgMsh2	56749782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	21	51	16	0.31372549	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon10:c.T1698C:p.A566A	18qD3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9469504	CTG	synonymous	NA	NA	NA	NA
M3	chr18	58190283	12A2p6	cell line	sgMsh2	58190283	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	26	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon5:c.T586A:p.C196S	18qD3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9602973	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	60391010	12A2p6	cell line	sgMsh2	60391010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	65	0	0	NA	exonic	Iigp1	nonsynonymous SNV	"Iigp1:NM_001146275:exon3:c.A1199G:p.E400G,Iigp1:NM_021792:exon3:c.A1199G:p.E400G"	18qD3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9961324	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	61081937	12A2p6	cell line	sgMsh2	61081937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	73	0	0	NA	exonic	Pdgfrb	nonsynonymous SNV	"Pdgfrb:NM_001146268:exon22:c.T3025C:p.Y1009H,Pdgfrb:NM_008809:exon22:c.T3022C:p.Y1008H"	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9976155	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr18	61140942	12A2p6	cell line	sgMsh2	61140942	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	59	30	4	0.133333333	exonic	Hmgxb3	nonsynonymous SNV	"Hmgxb3:NM_178277:exon15:c.T2573A:p.L858Q,Hmgxb3:NM_134134:exon16:c.T2477A:p.L826Q"	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9944444	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr18	63926639	12A2p6	cell line	sgMsh2	63926639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	47	16	5	0.3125	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon23:c.A3793G:p.T1265A,Wdr7:NM_001014981:exon24:c.A3889G:p.T1297A"	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9885657	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M3	chr18	65451559	12A2p6	cell line	sgMsh2	65451559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	42	13	0	0	exonic	Malt1	nonsynonymous SNV	"Malt1:NM_172833:exon7:c.A965G:p.N322S,Malt1:NM_001365019:exon8:c.A998G:p.N333S"	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9845778	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr18	67310692	12A2p6	cell line	sgMsh2	67310692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.625	17	14	4	0.285714286	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon5:c.A433T:p.T145S	18qE1	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	2	1	1	0.9332787	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr18	76145787	12A2p6	cell line	sgMsh2	76145787	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.157	43	11	1	0.090909091	exonic	Zbtb7c	nonsynonymous SNV	"Zbtb7c:NM_001357506:exon3:c.A1315G:p.M439V,Zbtb7c:NM_145356:exon5:c.A1315G:p.M439V"	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	0.672326466	2	0.5342864	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr18	76302457	12A2p6	cell line	sgMsh2	76302457	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	121	127	37	0.291338583	exonic	Smad2	nonsynonymous SNV	"Smad2:NM_001311070:exon8:c.G1120T:p.A374S,Smad2:NM_001252481:exon10:c.G1210T:p.A404S,Smad2:NM_010754:exon10:c.G1210T:p.A404S"	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998699	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr18	79086842	12A2p6	cell line	sgMsh2	79086842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	50	17	2	0.117647059	exonic	Setbp1	synonymous SNV	Setbp1:NM_053099:exon2:c.A174G:p.S58S	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9904495	CTG	synonymous	NA	NA	NA	NA
M3	chr18	80130301	12A2p6	cell line	sgMsh2	80130301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	56	30	15	0.5	exonic	Adnp2	stopgain	Adnp2:NM_175028:exon4:c.C892T:p.Q298X	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9933432	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr18	80971684	12A2p6	cell line	sgMsh2	80971684	T	-	Deletion	Strelka2;Vardict	2	0.24	25	0	0	NA	exonic	Sall3	frameshift deletion	Sall3:NM_001369133:exon2:c.3028delA:p.S1010Vfs*30	18qE3	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr18	84561870	12A2p6	cell line	sgMsh2	84561870	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	148	23	10	0.434782609	exonic	Zfp407	nonsynonymous SNV	Zfp407:NM_001033341:exon2:c.C1117A:p.L373I	18qE4	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999747	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	109	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.96	4.111040811	NA	1	1	1	0.9997307	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr19	3362184	12A2p6	cell line	sgMsh2	3362184	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	128	151	9	0.059602649	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon6:c.T655A:p.W219R	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	104	185	20	0.108108108	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr19	3659246	12A2p6	cell line	sgMsh2	3659246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	76	149	30	0.201342282	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon2:c.T483C:p.H161H	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M3	chr19	3715733	12A2p6	cell line	sgMsh2	3715733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	171	73	7	0.095890411	exonic	1810055G02Rik	nonsynonymous SNV	"1810055G02Rik:NM_001358256:exon3:c.A7G:p.T3A,1810055G02Rik:NM_001358257:exon3:c.A7G:p.T3A,1810055G02Rik:NM_001358258:exon3:c.A7G:p.T3A,1810055G02Rik:NM_028077:exon3:c.A7G:p.T3A"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	4290661	12A2p6	cell line	sgMsh2	4290661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	156	110	18	0.163636364	exonic	Grk2	nonsynonymous SNV	"Grk2:NM_001290818:exon10:c.A769G:p.M257V,Grk2:NM_130863:exon11:c.A643G:p.M215V"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	4450969	12A2p6	cell line	sgMsh2	4450969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	129	30	5	0.166666667	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1052G:p.N351S	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	4613327	12A2p6	cell line	sgMsh2	4613327	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	32	76	17	0.223684211	exonic	Lrfn4	nonsynonymous SNV	Lrfn4:NM_153388:exon2:c.C1178A:p.A393D	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr19	4613371	12A2p6	cell line	sgMsh2	4613371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	26	62	15	0.241935484	exonic	Lrfn4	synonymous SNV	Lrfn4:NM_153388:exon2:c.T1134C:p.S378S	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M3	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.627	75	5	3	0.6	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	77	7	2	0.285714286	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	4918080	12A2p6	cell line	sgMsh2	4918080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	92	187	33	0.176470588	exonic	Dpp3	nonsynonymous SNV	"Dpp3:NM_001360711:exon8:c.T869C:p.I290T,Dpp3:NM_133803:exon8:c.T869C:p.I290T"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr19	5026399	12A2p6	cell line	sgMsh2	5026399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	8	0	0	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon4:c.T314C:p.I105T	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr19	5480730	12A2p6	cell line	sgMsh2	5480730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	107	245	35	0.142857143	exonic	Efemp2	nonsynonymous SNV	"Efemp2:NM_001164352:exon9:c.T1216G:p.F406V,Efemp2:NM_001374680:exon10:c.T1195G:p.F399V,Efemp2:NM_021474:exon10:c.T1159G:p.F387V"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	5655735	12A2p6	cell line	sgMsh2	5655735	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	245	47	7	0.14893617	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon6:c.T1204C:p.F402L,Sipa1:NM_001164568:exon6:c.T1204C:p.F402L,Sipa1:NM_001164480:exon7:c.T1204C:p.F402L,Sipa1:NM_011379:exon7:c.T1204C:p.F402L,Sipa1:NM_001164481:exon8:c.T1204C:p.F402L"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	112	102	33	0.323529412	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	92	525	62	0.118095238	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	5770402	12A2p6	cell line	sgMsh2	5770402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	113	178	30	0.168539326	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon3:c.T403C:p.C135R,Scyl1:NM_001361922:exon3:c.T403C:p.C135R,Scyl1:NM_023912:exon3:c.T403C:p.C135R"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	5884465	12A2p6	cell line	sgMsh2	5884465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	52	10	1	0.1	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_001361974:exon5:c.A286G:p.I96V,Slc25a45:NM_134154:exon5:c.A460G:p.I154V,Slc25a45:NM_001361973:exon6:c.A460G:p.I154V"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr19	6011343	12A2p6	cell line	sgMsh2	6011343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	63	128	15	0.1171875	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon5:c.C544A:p.Q182K,Capn1:NM_007600:exon5:c.C544A:p.Q182K"	19qA	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr19	6062383	12A2p6	cell line	sgMsh2	6062383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	47	9	3	0.333333333	exonic	Znhit2	nonsynonymous SNV	Znhit2:NM_013859:exon1:c.T1157C:p.V386A	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.633785458	2	0.7011125	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	45	8	2	0.25	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.595244451	2	0.009021892	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	6831858	12A2p6	cell line	sgMsh2	6831858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	88	43	8	0.186046512	exonic	Rps6ka4	synonymous SNV	Rps6ka4:NM_019924:exon12:c.G1338A:p.L446L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.873596172	1	0.9708493	CCA	synonymous	NA	NA	NA	NA
M3	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	69	43	5	0.11627907	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.86074917	1	0.9438579	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	7271479	12A2p6	cell line	sgMsh2	7271479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	77	53	5	0.094339623	exonic	Rcor2	synonymous SNV	"Rcor2:NM_001320554:exon8:c.A816G:p.A272A,Rcor2:NM_054048:exon9:c.A816G:p.A272A"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.826490496	1	0.8953717	CAG	synonymous	NA	NA	NA	NA
M3	chr19	7782147	12A2p6	cell line	sgMsh2	7782147	T	-	Deletion	Strelka2;Vardict	2	0.1275	204	0	0	NA	exonic	Slc22a26	frameshift deletion	Slc22a26:NM_146232:exon10:c.1622delA:p.K541Rfs*8	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.545997608	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr19	8945845	12A2p6	cell line	sgMsh2	8945845	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	183	311	9	0.028938907	exonic	Mta2	frameshift deletion	Mta2:NM_011842:exon4:c.280delT:p.F94Lfs*8	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.706585139	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr19	9016193	12A2p6	cell line	sgMsh2	9016193	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	195	739	116	0.156968877	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14840T:p.N4947I	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	0.8053585	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.236	34	118	15	0.127118644	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	1	0.9751858	GTC	synonymous	NA	NA	NA	NA
M3	chr19	10218466	12A2p6	cell line	sgMsh2	10218466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	47	202	22	0.108910891	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon12:c.G1789A:p.E597K	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	1	0.9885657	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr19	10444168	12A2p6	cell line	sgMsh2	10444168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	128	4	1	0.25	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon8:c.A1091G:p.N364S,Syt7:NM_173067:exon9:c.A1223G:p.N408S,Syt7:NM_173068:exon10:c.A1583G:p.N528S,Syt7:NM_001373944:exon11:c.A1715G:p.N572S"	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.7084413	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	116	8	4	0.5	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.706585139	2	0.867934	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	91	10	2	0.2	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.462492091	2	0.790806	GTA	synonymous	NA	NA	NA	NA
M3	chr19	11251812	12A2p6	cell line	sgMsh2	11251812	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	158	0	0	NA	exonic	Ms4a1	synonymous SNV	Ms4a1:NM_007641:exon7:c.A729C:p.L243L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.582397448	2	0.9997669	TTA	synonymous	NA	NA	NA	NA
M3	chr19	11283759	12A2p6	cell line	sgMsh2	11283759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	266	0	0	NA	exonic	Ms4a5	nonsynonymous SNV	Ms4a5:NM_183190:exon1:c.T35C:p.L12P	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	0.9257502	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	12088088	12A2p6	cell line	sgMsh2	12088088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	379	0	0	NA	exonic	Olfr1426	nonsynonymous SNV	Olfr1426:NM_146809:exon3:c.A703G:p.I235V	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.620938456	2	3.42E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	12209969	12A2p6	cell line	sgMsh2	12209969	A	G	SNV	Mutect2;MuSe;Vardict	3	0.125	654	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.A402G:p.S134S	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.535291772	2	0.9999999	CAT	synonymous	NA	NA	NA	NA
M3	chr19	12954046	12A2p6	cell line	sgMsh2	12954046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	220	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T456C:p.S152S	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.890725509	1	0.9994558	GTT	synonymous	NA	NA	NA	NA
M3	chr19	12999847	12A2p6	cell line	sgMsh2	12999847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	152	0	0	NA	exonic	Olfr1451	nonsynonymous SNV	Olfr1451:NM_146705:exon1:c.T860G:p.V287G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.638067793	2	0.9979455	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	13234706	12A2p6	cell line	sgMsh2	13234706	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	258	0	0	NA	exonic	Olfr1463	nonsynonymous SNV	Olfr1463:NM_001011840:exon1:c.T455G:p.L152R	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.531009438	2	0.9993055	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	13313662	12A2p6	cell line	sgMsh2	13313662	A	-	Deletion	Strelka2;Vardict	2	0.127	126	0	0	NA	exonic	Olfr1465	frameshift deletion	Olfr1465:NM_001011841:exon1:c.622delT:p.S208Lfs*2	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.543856441	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M3	chr19	13364669	12A2p6	cell line	sgMsh2	13364669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	144	0	0	NA	exonic	Olfr1467	synonymous SNV	Olfr1467:NM_146691:exon1:c.C40T:p.L14L	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.565268112	2	0.9991712	GCT	synonymous	NA	NA	NA	NA
M3	chr19	13364760	12A2p6	cell line	sgMsh2	13364760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	190	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T131C:p.M44T	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.603809119	2	0.999955	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	13454083	12A2p6	cell line	sgMsh2	13454083	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	376	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T433C:p.C145R	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.830772831	1	0.9912672	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M3	chr19	13502626	12A2p6	cell line	sgMsh2	13502626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	689	0	0	NA	exonic	Olfr1477	synonymous SNV	Olfr1477:NM_146696:exon2:c.T282C:p.N94N	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M3	chr19	13586101	12A2p6	cell line	sgMsh2	13586101	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	544	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.T796A:p.S266T	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.650914795	2	1.03E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr19	13654758	12A2p6	cell line	sgMsh2	13654758	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.177	309	0	0	NA	exonic	Olfr1490	frameshift insertion	Olfr1490:NM_001011832:exon1:c.314dupT:p.G106Wfs*3	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.75797315	NA	NA	CAT	frameshift	NA	NA	NA	1
M3	chr19	13654771	12A2p6	cell line	sgMsh2	13654771	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	312	0	0	NA	exonic	Olfr1490	nonsynonymous SNV	Olfr1490:NM_001011832:exon1:c.G326T:p.S109I	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.428233418	3	0.9969091	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr19	13705156	12A2p6	cell line	sgMsh2	13705156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	321	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A328G:p.T110A	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.856466836	1	0.9989161	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	13861984	12A2p6	cell line	sgMsh2	13861984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	431	0	0	NA	exonic	Olfr1502	nonsynonymous SNV	Olfr1502:NM_146797:exon1:c.A190G:p.S64G	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.586679782	2	1.67E-09	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	13919023	12A2p6	cell line	sgMsh2	13919023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	338	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.T2G:p.M1R	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.796514157	1	0.6974023	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	185	248	46	0.185483871	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.787949489	1	0.6671768	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	266	71	11	0.154929577	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.680891134	2	0.9997991	TAC	synonymous	NA	NA	NA	NA
M3	chr19	17330062	12A2p6	cell line	sgMsh2	17330062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	160	108	9	0.083333333	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.T298C:p.C100R,Gcnt1:NM_010265:exon3:c.T298C:p.C100R,Gcnt1:NM_173442:exon3:c.T298C:p.C100R"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.590962117	2	0.9998002	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	21428623	12A2p6	cell line	sgMsh2	21428623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	151	81	12	0.148148148	exonic	Gda	synonymous SNV	Gda:NM_010266:exon3:c.T240C:p.D80D	19qB	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.817925828	1	0.09420249	TAT	synonymous	NA	NA	NA	NA
M3	chr19	21815516	12A2p6	cell line	sgMsh2	21815516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	155	101	12	0.118811881	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon11:c.C2135T:p.P712L,Cemip2:NM_031997:exon12:c.C2135T:p.P712L"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.916419514	1	0.9990912	CCG	nonsynonymous	ACTC	8	ACTCACTC	NA
M3	chr19	23263665	12A2p6	cell line	sgMsh2	23263665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	108	121	20	0.165289256	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252684:exon4:c.T482C:p.V161A,Smc5:NM_001252685:exon4:c.T254C:p.V85A,Smc5:NM_153808:exon4:c.T482C:p.V161A"	19qB	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	0.942113519	1	0.9980253	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	26649132	12A2p6	cell line	sgMsh2	26649132	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.213	73	4	0	0	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1355G:p.E452G	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.91213718	1	0.9829202	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	26649134	12A2p6	cell line	sgMsh2	26649134	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.213	73	6	0	0	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1357G:p.R453G	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.91213718	1	0.9829202	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	202	328	61	0.18597561	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.805078826	1	0.8431208	CTC	synonymous	NA	NA	NA	NA
M3	chr19	28905451	12A2p6	cell line	sgMsh2	28905451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	156	0	0	NA	exonic	Slc1a1	nonsynonymous SNV	Slc1a1:NM_009199:exon10:c.T1114A:p.Y372N	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.749408481	2	0.735138	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr19	29602644	12A2p6	cell line	sgMsh2	29602644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	249	36	8	0.222222222	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon25:c.A3844G:p.I1282V	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.603809119	2	0.9999987	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr19	29700162	12A2p6	cell line	sgMsh2	29700162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	178	0	0	NA	exonic	Mlana	synonymous SNV	Mlana:NM_029993:exon2:c.T63C:p.T21T	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.805078826	1	0.8419815	CTG	synonymous	NA	NA	NA	NA
M3	chr19	30116427	12A2p6	cell line	sgMsh2	30116427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	180	9	1	0.111111111	exonic	Gldc	nonsynonymous SNV	Gldc:NM_138595:exon18:c.A2189G:p.Y730C	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.659479463	2	0.9983932	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr19	30585291	12A2p6	cell line	sgMsh2	30585291	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	120	0	0	NA	exonic	Prkg1	synonymous SNV	"Prkg1:NM_001013833:exon14:c.C1512T:p.G504G,Prkg1:NM_011160:exon14:c.C1557T:p.G519G"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.693738137	2	0.9227299	AGC	synonymous	NA	NA	NA	NA
M3	chr19	31917996	12A2p6	cell line	sgMsh2	31917996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	158	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.A478C:p.T160P,A1cf:NM_001365078:exon5:c.A478C:p.T160P"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.745126147	2	0.7796858	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	31920923	12A2p6	cell line	sgMsh2	31920923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	302	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon6:c.A706G:p.R236G,A1cf:NM_001365078:exon6:c.A706G:p.R236G"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.672326466	2	0.9999771	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	33964871	12A2p6	cell line	sgMsh2	33964871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	109	0	0	NA	exonic	Lipf	nonsynonymous SNV	Lipf:NM_026334:exon3:c.A200G:p.K67R	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.706585139	2	0.8418521	AAG	nonsynonymous	A	5	AAAAA	NA
M3	chr19	34495079	12A2p6	cell line	sgMsh2	34495079	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	242	44	0.181818182	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon9:c.A941T:p.N314I,Lipa:NM_021460:exon9:c.A941T:p.N314I"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	1	0.9961324	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr19	34573176	12A2p6	cell line	sgMsh2	34573176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	247	46	9	0.195652174	exonic	Ifit2	nonsynonymous SNV	"Ifit2:NM_001355262:exon3:c.T115C:p.F39L,Ifit2:NM_008332:exon3:c.T115C:p.F39L"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.813643494	1	0.913095	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	213	32	1	0.03125	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.693738137	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M3	chr19	34588266	12A2p6	cell line	sgMsh2	34588266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	276	4	0	0	exonic	Ifit3	stoploss	Ifit3:NM_010501:exon2:c.A1211G:p.X404W	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.415386415	3	0.9983392	TAG	nonsynonymous	AGCA	8	AGCAAGCA	NA
M3	chr19	34594484	12A2p6	cell line	sgMsh2	34594484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	862	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.A572G:p.Y191C,Ifit1bl1:NM_001110517:exon2:c.A572G:p.Y191C"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.376845408	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr19	34594605	12A2p6	cell line	sgMsh2	34594605	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	773	2	1	0.5	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G451T:p.G151C,Ifit1bl1:NM_001110517:exon2:c.G451T:p.G151C"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.432515752	3	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr19	34620037	12A2p6	cell line	sgMsh2	34620037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	290	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.A178G:p.I60V,Ifit1bl2:NM_053217:exon3:c.A178G:p.I60V"	19qC1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.620938456	2	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	38057860	12A2p6	cell line	sgMsh2	38057860	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	131	95	8	0.084210526	exonic	Cep55	nonsynonymous SNV	"Cep55:NM_028293:exon2:c.C60A:p.S20R,Cep55:NM_001164362:exon3:c.C60A:p.S20R,Cep55:NM_001360663:exon3:c.C60A:p.S20R,Cep55:NM_028760:exon3:c.C60A:p.S20R"	19qC2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.595244451	2	0.9987404	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr19	38400469	12A2p6	cell line	sgMsh2	38400469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	147	38	8	0.210526316	exonic	Slc35g1	nonsynonymous SNV	Slc35g1:NM_175507:exon2:c.T223A:p.L75M	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.933548851	1	0.9994488	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	38701977	12A2p6	cell line	sgMsh2	38701977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	46	5	0.108695652	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon5:c.T2104C:p.F702L	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.706585139	2	0.8207657	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	121	53	8	0.150943396	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.552421109	2	0.9965227	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr19	38719591	12A2p6	cell line	sgMsh2	38719591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	130	49	6	0.12244898	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3123A:p.H1041Q	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.805078826	1	0.8396828	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr19	38945419	12A2p6	cell line	sgMsh2	38945419	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	284	157	24	0.152866242	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon9:c.T683G:p.I228S	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.847902167	1	0.9958167	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr19	39093485	12A2p6	cell line	sgMsh2	39093485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	336	18	3	0.166666667	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon9:c.T1454C:p.I485T	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.715149808	2	0.9995077	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr19	40585490	12A2p6	cell line	sgMsh2	40585490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	223	317	22	0.069400631	exonic	Aldh18a1	nonsynonymous SNV	"Aldh18a1:NM_019698:exon3:c.A88C:p.N30H,Aldh18a1:NM_153554:exon3:c.A88C:p.N30H"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.646632461	2	0.9999028	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	40962445	12A2p6	cell line	sgMsh2	40962445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	101	1	0	0	exonic	Blnk	synonymous SNV	"Blnk:NM_001365054:exon5:c.T261C:p.P87P,Blnk:NM_008528:exon5:c.T261C:p.P87P"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.843619833	1	0.9452895	CAG	synonymous	GGCA	8	GGCAGGCA	NA
M3	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	175	1262	246	0.194928685	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.531009438	2	0.9965966	GAC	synonymous	NA	NA	NA	NA
M3	chr19	41925226	12A2p6	cell line	sgMsh2	41925226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	98	145	16	0.110344828	exonic	Exosc1	nonsynonymous SNV	"Exosc1:NM_001164561:exon4:c.A236G:p.K79R,Exosc1:NM_001320233:exon5:c.A74G:p.K25R,Exosc1:NM_025644:exon6:c.A359G:p.K120R"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.886443175	1	0.9838663	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	41928081	12A2p6	cell line	sgMsh2	41928081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	295	179	31	0.173184358	exonic	Exosc1	synonymous SNV	"Exosc1:NM_001320231:exon4:c.A255G:p.V85V,Exosc1:NM_001320232:exon4:c.A255G:p.V85V,Exosc1:NM_025644:exon4:c.A255G:p.V85V"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.680891134	2	0.9999333	GTA	synonymous	NA	NA	NA	NA
M3	chr19	42767181	12A2p6	cell line	sgMsh2	42767181	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	96	26	0	0	exonic	Hps1	frameshift deletion	"Hps1:NM_001362410:exon6:c.605delG:p.G202Afs*159,Hps1:NM_001346703:exon7:c.605delG:p.G202Afs*167,Hps1:NM_019424:exon7:c.605delG:p.G202Afs*159"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	103	266	34	0.127819549	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.590962117	2	0.9934841	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	45796295	12A2p6	cell line	sgMsh2	45796295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	31	0	0	NA	exonic	Kcnip2	synonymous SNV	Kcnip2:NM_145703:exon3:c.C207T:p.P69P	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	1	0.9703799	GGG	synonymous	GCGG	9	GCGGGCGGG	NA
M3	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	81	20	3	0.15	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.933548851	1	0.9922846	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	46005998	12A2p6	cell line	sgMsh2	46005998	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	161	12	1	0.083333333	exonic	Hps6	synonymous SNV	Hps6:NM_176785:exon1:c.A2373G:p.P791P	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	2	1	1	0.9999885	CAC	synonymous	NA	NA	NA	NA
M3	chr19	46076046	12A2p6	cell line	sgMsh2	46076046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	116	176	25	0.142045455	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon1:c.T17C:p.L6S,Nolc1:NM_001039352:exon1:c.T17C:p.L6S,Nolc1:NM_001039353:exon1:c.T17C:p.L6S,Nolc1:NM_053086:exon1:c.T17C:p.L6S"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.488186096	2	0.914236	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	51	5	0	0	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.6752062	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr19	46330185	12A2p6	cell line	sgMsh2	46330185	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	83	33	4	0.121212121	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T905G:p.L302W,Fbxl15:NM_133694:exon4:c.T797G:p.L266W"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.535291772	2	0.9783785	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr19	46898645	12A2p6	cell line	sgMsh2	46898645	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	181	348	1	0.002873563	exonic	Nt5c2	frameshift deletion	"Nt5c2:NM_001377070:exon6:c.429delT:p.F143Lfs*29,Nt5c2:NM_001164363:exon7:c.594delT:p.F198Lfs*29,Nt5c2:NM_001164365:exon7:c.591delT:p.F197Lfs*29,Nt5c2:NM_001377066:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_001377068:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_001377069:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_029810:exon7:c.516delT:p.F172Lfs*29"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.672326466	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr19	46924301	12A2p6	cell line	sgMsh2	46924301	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	155	239	18	0.075313808	exonic	Nt5c2	stopgain	"Nt5c2:NM_001377070:exon2:c.49delA:p.I17fs*0,Nt5c2:NM_001164363:exon3:c.214delA:p.I72fs*0,Nt5c2:NM_001164365:exon3:c.211delA:p.I71fs*0,Nt5c2:NM_001377066:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_001377068:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_001377069:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_029810:exon3:c.136delA:p.I46fs*0"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M3	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	224	21	1	0.047619048	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.659479463	2	0.9997747	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr19	47075043	12A2p6	cell line	sgMsh2	47075043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	229	22	3	0.136363636	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon3:c.A1031G:p.D344G	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.762255484	2	0.7927757	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr19	47103823	12A2p6	cell line	sgMsh2	47103823	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	233	89	19	0.213483146	exonic	Pdcd11	synonymous SNV	Pdcd11:NM_011053:exon10:c.T1257C:p.C419C	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.535291772	2	0.9992763	GTA	synonymous	NA	NA	NA	NA
M3	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	94	103	14	0.13592233	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9377935	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	181	146	17	0.116438356	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.8723406	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr19	47615216	12A2p6	cell line	sgMsh2	47615216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	409	236	6	0.025423729	exonic	Slk	frameshift deletion	"Slk:NM_001164639:exon5:c.535delA:p.N180Ifs*21,Slk:NM_009289:exon5:c.535delA:p.N180Ifs*21"	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.749408481	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr19	47622617	12A2p6	cell line	sgMsh2	47622617	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.103	61	152	6	0.039473684	exonic	Slk	stopgain	"Slk:NM_001164639:exon11:c.C2521T:p.R841X,Slk:NM_009289:exon11:c.C2521T:p.R841X"	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.44108042	2	0.7444708	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr19	48487395	12A2p6	cell line	sgMsh2	48487395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	137	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon3:c.T692C:p.V231A	19qD1	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.702302805	2	0.9368184	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr19	52264871	12A2p6	cell line	sgMsh2	52264871	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	67	0	0	NA	exonic	Ins1	nonsynonymous SNV	Ins1:NM_008386:exon2:c.C248T:p.A83V	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.813643494	1	9.31E-07	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	141	563	116	0.206039076	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.783667155	1	0.6739391	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr19	55623900	12A2p6	cell line	sgMsh2	55623900	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	177	51	4	0.078431373	exonic	Vti1a	nonsynonymous SNV	"Vti1a:NM_016862:exon8:c.A644C:p.K215T,Vti1a:NM_001293685:exon9:c.A665C:p.K222T"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.8633948	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr19	56327234	12A2p6	cell line	sgMsh2	56327234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	136	0	0	NA	exonic	Nrap	synonymous SNV	"Nrap:NM_001286552:exon36:c.T4140C:p.D1380D,Nrap:NM_198059:exon37:c.T4383C:p.D1461D,Nrap:NM_008733:exon38:c.T4488C:p.D1496D"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.672326466	2	0.9806565	AAT	synonymous	NA	NA	NA	NA
M3	chr19	56848901	12A2p6	cell line	sgMsh2	56848901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	173	0	0	NA	exonic	Tdrd1	nonsynonymous SNV	"Tdrd1:NM_001002241:exon12:c.A1556G:p.Q519R,Tdrd1:NM_001002238:exon13:c.A1556G:p.Q519R,Tdrd1:NM_001002240:exon13:c.A1556G:p.Q519R,Tdrd1:NM_031387:exon13:c.A1556G:p.Q519R"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.800796491	1	0.8087833	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	151	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.680891134	2	0.9842718	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr19	58805445	12A2p6	cell line	sgMsh2	58805445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	129	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon9:c.T983C:p.I328T,Hspa12a:NM_001327998:exon10:c.T1037C:p.I346T"	19qD2	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.732279145	2	0.777135	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr19	60543015	12A2p6	cell line	sgMsh2	60543015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	176	373	46	0.123324397	exonic	Cacul1	nonsynonymous SNV	"Cacul1:NM_001172096:exon5:c.T815C:p.L272P,Cacul1:NM_001172097:exon5:c.T815C:p.L272P,Cacul1:NM_030197:exon5:c.T815C:p.L272P"	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.548138775	2	0.9991055	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr19	61227332	12A2p6	cell line	sgMsh2	61227332	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	77	1	0	0	exonic	Csf2ra	frameshift deletion	Csf2ra:NM_009970:exon2:c.34delC:p.L12Wfs*32	19qD3	chr19-6054831-61227351	6	4	2	0.96	4.111040811	NA	1	0.52244477	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	106	93	24	0.258064516	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.999677	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	3502535	12A2p6	cell line	sgMsh2	3502535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	83	169	54	0.319526627	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon4:c.A194T:p.N65I,Hspa14:NM_015765:exon5:c.A335T:p.N112I"	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986984	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr2	6408951	12A2p6	cell line	sgMsh2	6408951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	163	121	19	0.157024793	exonic	Usp6nl	nonsynonymous SNV	"Usp6nl:NM_181399:exon5:c.G287T:p.R96M,Usp6nl:NM_001080548:exon6:c.G218T:p.R73M"	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.698020471	2	0.9765586	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	9952272	12A2p6	cell line	sgMsh2	9952272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	160	43	22	0.511627907	exonic	Taf3	synonymous SNV	Taf3:NM_027748:exon3:c.A1083G:p.K361K	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999878	GTT	synonymous	NA	NA	NA	NA
M3	chr2	12978397	12A2p6	cell line	sgMsh2	12978397	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	129	53	0	0	exonic	Pter	frameshift deletion	"Pter:NM_001305436:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_008961:exon2:c.212delT:p.Q72Sfs*1,Pter:NM_001305437:exon3:c.248delT:p.Q84Sfs*1"	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.642350127	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr2	13282909	12A2p6	cell line	sgMsh2	13282909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	33	7	0.212121212	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon64:c.T10358C:p.L3453S	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	13388963	12A2p6	cell line	sgMsh2	13388963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	86	15	4	0.266666667	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon29:c.A4226G:p.N1409S	2qA1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	20850321	12A2p6	cell line	sgMsh2	20850321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	95	133	29	0.218045113	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon24:c.C4229A:p.A1410D,Arhgap21:NM_001128084:exon25:c.C4259A:p.A1420D"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.642350127	2	0.9582932	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	97	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	23399952	12A2p6	cell line	sgMsh2	23399952	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.186	97	0	0	NA	exonic	Nxph2	frameshift insertion	Nxph2:NM_008752:exon2:c.316dupA:p.M108Nfs*4	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.796514157	NA	NA	TTA	frameshift	A	5	AAAAA	1
M3	chr2	24758304	12A2p6	cell line	sgMsh2	24758304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	64	1	1	1	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon3:c.G508A:p.D170N,Cacna1b:NM_007579:exon3:c.G508A:p.D170N"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	45	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9871102	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	45	15	3	0.2	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9121843	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	25438838	12A2p6	cell line	sgMsh2	25438838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	39	22	7	0.318181818	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon19:c.A2793G:p.L931L,Abca2:NM_007379:exon19:c.A2790G:p.L930L"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9815572	TAC	synonymous	NA	NA	NA	NA
M3	chr2	25493787	12A2p6	cell line	sgMsh2	25493787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	64	0	0	NA	exonic	Lcn12	nonsynonymous SNV	Lcn12:NM_029958:exon1:c.A70G:p.M24V	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr2	25706992	12A2p6	cell line	sgMsh2	25706992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	53	30	5	0.166666667	exonic	Bmyc	nonsynonymous SNV	Bmyc:NM_023326:exon1:c.T67C:p.F23L	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	25939739	12A2p6	cell line	sgMsh2	25939739	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	139	62	17	0.274193548	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T1972G:p.F658V,Camsap1:NM_001276360:exon12:c.T2005G:p.F669V,Camsap1:NM_001276361:exon12:c.T2032G:p.F678V,Camsap1:NM_001372499:exon12:c.T2005G:p.F669V"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.740843813	2	0.7507146	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	26435966	12A2p6	cell line	sgMsh2	26435966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	110	42	13	0.30952381	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.A3698C:p.E1233A	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9997466	CTC	nonsynonymous	GCTCAG	12	GCTCAGGCTCAG	NA
M3	chr2	26935351	12A2p6	cell line	sgMsh2	26935351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	99	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon2:c.A53G:p.N18S,Stkld1:NM_001379464:exon2:c.A53G:p.N18S,Stkld1:NM_198628:exon2:c.A29G:p.N10S"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9995063	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	26973545	12A2p6	cell line	sgMsh2	26973545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	57	0	0	NA	exonic	Adamts13	synonymous SNV	"Adamts13:NM_001001322:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290463:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290464:exon1:c.G9A:p.Q3Q,Adamts13:NM_001290465:exon1:c.G9A:p.Q3Q"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	AGC	synonymous	NA	NA	NA	NA
M3	chr2	26983866	12A2p6	cell line	sgMsh2	26983866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	64	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon10:c.T1126A:p.C376S,Adamts13:NM_001290463:exon10:c.T1126A:p.C376S,Adamts13:NM_001290464:exon10:c.T1126A:p.C376S,Adamts13:NM_001290465:exon10:c.T1126A:p.C376S"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	27268177	12A2p6	cell line	sgMsh2	27268177	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.115	41	0	0	NA	exonic	Vav2	nonsynonymous SNV	Vav2:NM_009500:exon26:c.A2378G:p.Q793R	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.492468431	2	0.8435051	CTG	nonsynonymous	G	5	GGGGG	NA
M3	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	68	82	15	0.182926829	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9967736	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	29146137	12A2p6	cell line	sgMsh2	29146137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	213	57	18	0.315789474	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon10:c.T2633C:p.L878P	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	29179716	12A2p6	cell line	sgMsh2	29179716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	154	61	16	0.262295082	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon26:c.T7532C:p.L2511P	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999824	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	29689110	12A2p6	cell line	sgMsh2	29689110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	52	17	0.326923077	exonic	Rapgef1	synonymous SNV	"Rapgef1:NM_001039086:exon4:c.A381G:p.S127S,Rapgef1:NM_001362702:exon4:c.A381G:p.S127S,Rapgef1:NM_001039087:exon5:c.A495G:p.S165S,Rapgef1:NM_054050:exon5:c.A495G:p.S165S"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.753690815	1	8.55E-05	CAG	synonymous	NA	NA	NA	NA
M3	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	50	11	3	0.272727273	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9904495	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.532	54	68	31	0.455882353	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9924912	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr2	30376735	12A2p6	cell line	sgMsh2	30376735	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	93	12	3	0.25	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon8:c.T883G:p.S295A,Miga2:NM_001378906:exon8:c.T883G:p.S295A,Miga2:NM_001378907:exon8:c.T883G:p.S295A,Miga2:NM_001378909:exon8:c.T310G:p.S104A,Miga2:NM_001378911:exon8:c.T310G:p.S104A,Miga2:NM_175392:exon8:c.T883G:p.S295A"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	31912023	12A2p6	cell line	sgMsh2	31912023	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	59	0	0	NA	exonic	Lamc3	nonsynonymous SNV	Lamc3:NM_011836:exon8:c.A1442T:p.H481L	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9944444	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	32096059	12A2p6	cell line	sgMsh2	32096059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	29	0	0	NA	exonic	Plpp7	nonsynonymous SNV	"Plpp7:NM_001355238:exon1:c.A248G:p.N83S,Plpp7:NM_145521:exon1:c.A248G:p.N83S"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.966686	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	141	94	21	0.223404255	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9995996	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Vardict	2	0.25	12	5	1	0.2	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9113752	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	32578965	12A2p6	cell line	sgMsh2	32578965	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	164	0	0	NA	exonic	Pip5kl1	frameshift deletion	"Pip5kl1:NM_001379020:exon6:c.721delA:p.K242Rfs*27,Pip5kl1:NM_001379021:exon6:c.430delA:p.K145Rfs*27,Pip5kl1:NM_198191:exon6:c.595delA:p.K200Rfs*27"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr2	32708204	12A2p6	cell line	sgMsh2	32708204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	142	210	33	0.157142857	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon7:c.A839T:p.K280M	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.753690815	2	0.6449081	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	32761588	12A2p6	cell line	sgMsh2	32761588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	46	16	2	0.125	exonic	Tor2a	nonsynonymous SNV	"Tor2a:NM_001369225:exon4:c.G686A:p.R229H,Tor2a:NM_001369222:exon5:c.G817A:p.V273I,Tor2a:NM_001369223:exon5:c.G811A:p.V271I,Tor2a:NM_001369224:exon5:c.G818A:p.R273H,Tor2a:NM_152800:exon5:c.G814A:p.V272I"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.556703443	2	0.8528842	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	66	141	50	0.354609929	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	36859777	12A2p6	cell line	sgMsh2	36859777	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	197	0	0	NA	exonic	Olfr351	synonymous SNV	Olfr351:NM_146942:exon1:c.T570A:p.T190T	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999987	GAG	synonymous	NA	NA	NA	NA
M3	chr2	36996936	12A2p6	cell line	sgMsh2	36996936	-	T	Insertion	Strelka2;Vardict	2	0.0667	150	0	0	NA	exonic	Olfr357	frameshift insertion	Olfr357:NM_146623:exon1:c.126dupT:p.I45Yfs*20	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.28563169	NA	NA	AAT	frameshift	T	5	TTTTT	1
M3	chr2	37085433	12A2p6	cell line	sgMsh2	37085433	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	218	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T314G:p.M105R	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	37202003	12A2p6	cell line	sgMsh2	37202003	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.257	261	0	0	NA	exonic	Olfr365	frameshift insertion	Olfr365:NM_146662:exon1:c.762dupT:p.G255Wfs*7	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	1
M3	chr2	37414545	12A2p6	cell line	sgMsh2	37414545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	69	59	15	0.254237288	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon3:c.T202C:p.F68L,Rc3h2:NM_001290642:exon3:c.T202C:p.F68L"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	38947312	12A2p6	cell line	sgMsh2	38947312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	57	4	2	0.5	exonic	Olfml2a	nonsynonymous SNV	Olfml2a:NM_172854:exon3:c.A466G:p.T156A	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9937324	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	40801423	12A2p6	cell line	sgMsh2	40801423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	102	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon66:c.C10383T:p.D3461D	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9752118	AGT	synonymous	NA	NA	NA	NA
M3	chr2	41123015	12A2p6	cell line	sgMsh2	41123015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	60	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon37:c.T5919G:p.G1973G	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.552421109	2	0.939319	AAC	synonymous	NA	NA	NA	NA
M3	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M3	chr2	41435587	12A2p6	cell line	sgMsh2	41435587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	90	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon18:c.C2817T:p.C939C	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991482	TGC	synonymous	NA	NA	NA	NA
M3	chr2	41471003	12A2p6	cell line	sgMsh2	41471003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	69	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon13:c.A2129G:p.Y710C	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.211	97	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.009962131	GAT	synonymous	NA	NA	NA	NA
M3	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.41	58	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr2	43589396	12A2p6	cell line	sgMsh2	43589396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	78	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon4:c.T301C:p.Y101H,Kynu:NM_001289594:exon4:c.T301C:p.Y101H,Kynu:NM_027552:exon4:c.T301C:p.Y101H"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9982381	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	43679978	12A2p6	cell line	sgMsh2	43679978	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	46	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon13:c.T1271G:p.V424G,Kynu:NM_027552:exon13:c.T1271G:p.V424G"	2qB	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	52111938	12A2p6	cell line	sgMsh2	52111938	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.228	147	57	11	0.192982456	exonic	Rif1	synonymous SNV	"Rif1:NM_001355414:exon30:c.T5403C:p.A1801A,Rif1:NM_001355415:exon30:c.T5382C:p.A1794A,Rif1:NM_175238:exon30:c.T5403C:p.A1801A"	2qC1.1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999213	CTT	synonymous	CTTCC	10	CTTCCCTTCC	NA
M3	chr2	52299574	12A2p6	cell line	sgMsh2	52299574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	75	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon25:c.A2303G:p.Y768C	2qC1.1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9739893	GTA	nonsynonymous	TGCTT	12	TGCTTTGCTTTG	NA
M3	chr2	57305814	12A2p6	cell line	sgMsh2	57305814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	169	122	16	0.131147541	exonic	Gpd2	nonsynonymous SNV	"Gpd2:NM_001145820:exon5:c.A406G:p.M136V,Gpd2:NM_010274:exon5:c.A406G:p.M136V"	2qC1.1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.62522079	2	0.9995578	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	57999422	12A2p6	cell line	sgMsh2	57999422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	54	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon1:c.G1033T:p.G345C	2qC1.1	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9924912	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	62705952	12A2p6	cell line	sgMsh2	62705952	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	58	0	0	NA	exonic	Kcnh7	synonymous SNV	Kcnh7:NM_133207:exon15:c.C3285A:p.S1095S	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.710867474	2	0.5148873	TGG	synonymous	NA	NA	NA	NA
M3	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	95	4	0	0	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M3	chr2	63980530	12A2p6	cell line	sgMsh2	63980530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	95	4	1	0.25	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A395T:p.K132I,Fign:NM_001267846:exon4:c.A362T:p.K121I,Fign:NM_001267847:exon4:c.A362T:p.K121I"	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	65460685	12A2p6	cell line	sgMsh2	65460685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	151	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon27:c.A5863G:p.T1955A,Scn3a:NM_001355167:exon27:c.A5812G:p.T1938A,Scn3a:NM_001355168:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355169:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355170:exon27:c.A5716G:p.T1906A,Scn3a:NM_001355171:exon27:c.A3958G:p.T1320A,Scn3a:NM_018732:exon27:c.A5716G:p.T1906A"	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999789	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	130	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999246	GTT	synonymous	NA	NA	NA	NA
M3	chr2	66093613	12A2p6	cell line	sgMsh2	66093613	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	154	80	25	0.3125	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon7:c.T1310G:p.V437G	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999824	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	89	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.989219195	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr2	69284628	12A2p6	cell line	sgMsh2	69284628	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	88	0	0	NA	exonic	Abcb11	nonsynonymous SNV	"Abcb11:NM_021022:exon16:c.G1973A:p.S658N,Abcb11:NM_001363492:exon17:c.G1973A:p.S658N"	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.9430193	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	69397704	12A2p6	cell line	sgMsh2	69397704	-	A	Insertion	Strelka2;Vardict	2	0.2069	116	8	0	0	exonic	Dhrs9	frameshift insertion	Dhrs9:NM_175512:exon4:c.662dupA:p.L224Tfs*20	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.886014942	NA	NA	TGA	frameshift	A	8	AAAAAAAA	1
M3	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	210	1	1	1	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999994	TAT	synonymous	NA	NA	NA	NA
M3	chr2	69796061	12A2p6	cell line	sgMsh2	69796061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	204	71	10	0.14084507	exonic	Phospho2	nonsynonymous SNV	Phospho2:NM_028521:exon4:c.T560C:p.V187A	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7051148	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	70000509	12A2p6	cell line	sgMsh2	70000509	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	151	64	23	0.359375	exonic	Ubr3	synonymous SNV	"Ubr3:NM_001303033:exon30:c.T4431C:p.G1477G,Ubr3:NM_177783:exon30:c.T4419C:p.G1473G"	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999789	GTG	synonymous	NA	NA	NA	NA
M3	chr2	71343994	12A2p6	cell line	sgMsh2	71343994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	127	29	5	0.172413793	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon3:c.T105C:p.T35T	2qC2	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9922381	GAG	synonymous	NA	NA	NA	NA
M3	chr2	72970738	12A2p6	cell line	sgMsh2	72970738	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	110	243	29	0.119341564	exonic	Sp3	synonymous SNV	"Sp3:NM_001098425:exon2:c.C861T:p.N287N,Sp3:NM_001018042:exon4:c.C1062T:p.N354N"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.616656122	2	0.9913354	TGT	synonymous	NA	NA	NA	NA
M3	chr2	73580275	12A2p6	cell line	sgMsh2	73580275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	71	1	0	0	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon1:c.A13C:p.T5P	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9861811	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	24	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9553992	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr2	76046785	12A2p6	cell line	sgMsh2	76046785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	102	0	0	NA	exonic	Pde11a	nonsynonymous SNV	Pde11a:NM_001081033:exon15:c.A2339G:p.Y780C	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9995884	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	76555915	12A2p6	cell line	sgMsh2	76555915	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	140	1	1	1	exonic	Osbpl6	nonsynonymous SNV	"Osbpl6:NM_145525:exon11:c.A920C:p.K307T,Osbpl6:NM_001290733:exon12:c.A920C:p.K307T"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.749408481	2	7.68E-09	AAA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
M3	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	96	3	1	0.333333333	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9994079	AGC	synonymous	NA	NA	NA	NA
M3	chr2	76630499	12A2p6	cell line	sgMsh2	76630499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	78	85	30	0.352941176	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon8:c.A854G:p.H285R	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	76647184	12A2p6	cell line	sgMsh2	76647184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	122	84	11	0.130952381	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon2:c.T176C:p.V59A	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998776	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	76736474	12A2p6	cell line	sgMsh2	76736474	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	166	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.C59093T:p.T19698I,Ttn:NM_011652:exon275:c.C78836T:p.T26279I,Ttn:NM_001385708:exon312:c.C84668T:p.T28223I"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999915	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr2	76736937	12A2p6	cell line	sgMsh2	76736937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	151	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.T58630C:p.F19544L,Ttn:NM_011652:exon275:c.T78373C:p.F26125L,Ttn:NM_001385708:exon312:c.T84205C:p.F28069L"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9994265	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	76783972	12A2p6	cell line	sgMsh2	76783972	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	135	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon106:c.T26215G:p.C8739G,Ttn:NM_011652:exon227:c.T45958G:p.C15320G,Ttn:NM_001385708:exon264:c.T51790G:p.C17264G"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.999939	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	76849122	12A2p6	cell line	sgMsh2	76849122	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	80	0	0	NA	exonic	Ttn	nonsynonymous SNV	Ttn:NM_011652:exon137:c.A29681G:p.N9894S	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	2	1	1	0.9984391	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	76880202	12A2p6	cell line	sgMsh2	76880202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	190	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon89:c.A22792G:p.T7598A,Ttn:NM_001385708:exon91:c.A25849G:p.T8617A"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8731375	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	76894853	12A2p6	cell line	sgMsh2	76894853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	114	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon65:c.T16050C:p.D5350D,Ttn:NM_001385708:exon67:c.T19071C:p.D6357D"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9992809	AAT	synonymous	NA	NA	NA	NA
M3	chr2	76896383	12A2p6	cell line	sgMsh2	76896383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	133	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon61:c.T15091C:p.Y5031H,Ttn:NM_001385708:exon63:c.T18112C:p.Y6038H"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999372	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	76921578	12A2p6	cell line	sgMsh2	76921578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	127	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon44:c.G10213A:p.G3405S,Ttn:NM_011652:exon45:c.G10351A:p.G3451S,Ttn:NM_001385708:exon46:c.G10726A:p.G3576S"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999096	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr2	76932453	12A2p6	cell line	sgMsh2	76932453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	47	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon41:c.C9861T:p.S3287S,Ttn:NM_001385708:exon42:c.C9999T:p.S3333S,Ttn:NM_011652:exon42:c.C9999T:p.S3333S"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9885657	CGG	synonymous	NA	NA	NA	NA
M3	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	130	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999246	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	78301701	12A2p6	cell line	sgMsh2	78301701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	170	0	0	NA	exonic	Gm14461	nonsynonymous SNV	Gm14461:NM_177843:exon6:c.T10C:p.W4R	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.57383278	2	0.9998186	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	147	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	0.680891134	2	0.9817333	TAT	synonymous	NA	NA	NA	NA
M3	chr2	79644718	12A2p6	cell line	sgMsh2	79644718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	74	76	17	0.223684211	exonic	Itprid2	synonymous SNV	Itprid2:NM_080558:exon8:c.T1020C:p.P340P	2qC3	chr2-3197272-80658668	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	CTA	synonymous	NA	NA	NA	NA
M3	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	76	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.693738137	2	0.7271753	CTA	synonymous	NA	NA	NA	NA
M3	chr2	82256483	12A2p6	cell line	sgMsh2	82256483	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	175	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.A655T:p.T219S	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.873596172	1	0.9954155	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	83007483	12A2p6	cell line	sgMsh2	83007483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	179	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon22:c.A20785G:p.I6929V	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.526727104	2	0.995592	TAT	nonsynonymous	CTAT	8	CTATCTAT	NA
M3	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	246	1	0	0	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.847902167	1	0.9930052	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	83915312	12A2p6	cell line	sgMsh2	83915312	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	272	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1781T:p.N594I	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.80936116	1	0.887648	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr2	83915943	12A2p6	cell line	sgMsh2	83915943	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	193	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1150G:p.I384V	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.942113519	1	0.9999477	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr2	85035189	12A2p6	cell line	sgMsh2	85035189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	1	0	0	exonic	P2rx3	synonymous SNV	P2rx3:NM_145526:exon1:c.C111T:p.Y37Y	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	0.9981282	AGT	synonymous	NA	NA	NA	NA
M3	chr2	85608517	12A2p6	cell line	sgMsh2	85608517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	549	0	0	NA	exonic	Olfr1000	nonsynonymous SNV	Olfr1000:NM_001011695:exon1:c.T392C:p.L131P	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.946395853	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	85840993	12A2p6	cell line	sgMsh2	85840993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	155	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A797G:p.Y266C	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.882160841	1	0.9953215	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	85951228	12A2p6	cell line	sgMsh2	85951228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	297	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T164C:p.L55P	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.805078826	1	0.8475649	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	85992050	12A2p6	cell line	sgMsh2	85992050	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	218	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.C232A:p.P78T	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.719432142	2	0.983493	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	86160070	12A2p6	cell line	sgMsh2	86160070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	336	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A299G:p.Q100R	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.62522079	2	4.40E-08	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	86197827	12A2p6	cell line	sgMsh2	86197827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	175	0	0	NA	exonic	Olfr1045	synonymous SNV	Olfr1045:NM_147017:exon1:c.A924G:p.P308P	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.719432142	2	0.9509056	ATG	synonymous	NA	NA	NA	NA
M3	chr2	86198521	12A2p6	cell line	sgMsh2	86198521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	360	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.T230C:p.I77T	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.830772831	1	0.009961414	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	86347406	12A2p6	cell line	sgMsh2	86347406	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	228	0	0	NA	exonic	Olfr1055	nonsynonymous SNV	"Olfr1055:NM_001310551:exon1:c.A359G:p.Y120C,Olfr1055:NM_147021:exon1:c.A359G:p.Y120C"	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.239810714	3	1.18E-09	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	301	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.569550446	2	0.9999981	AAA	synonymous	NA	NA	NA	NA
M3	chr2	86445613	12A2p6	cell line	sgMsh2	86445613	T	C	SNV	Mutect2;MuSe;Vardict	3	0.114	258	0	0	NA	exonic	Olfr1065	nonsynonymous SNV	Olfr1065:NM_146408:exon1:c.A368G:p.Y123C	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.488186096	2	0.9182809	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr2	86538215	12A2p6	cell line	sgMsh2	86538215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	175	0	0	NA	exonic	Olfr1079	synonymous SNV	Olfr1079:NM_146407:exon1:c.T699C:p.A233A	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.505315433	2	0.9759973	CAG	synonymous	NA	NA	NA	NA
M3	chr2	86785904	12A2p6	cell line	sgMsh2	86785904	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	302	0	0	NA	exonic	Olfr1093	nonsynonymous SNV	"Olfr1093:NM_001368206:exon2:c.T173G:p.V58G,Olfr1093:NM_146366:exon3:c.T173G:p.V58G"	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.539574106	2	0.999904	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	86978375	12A2p6	cell line	sgMsh2	86978375	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	281	0	0	NA	exonic	Olfr1100	nonsynonymous SNV	Olfr1100:NM_146594:exon1:c.C420A:p.F140L	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	8.95E-09	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr2	87002441	12A2p6	cell line	sgMsh2	87002441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	405	0	0	NA	exonic	Olfr1102	synonymous SNV	Olfr1102:NM_207154:exon1:c.T471C:p.I157I	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.62522079	2	1.95E-09	TTA	synonymous	NA	NA	NA	NA
M3	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	257	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.556703443	2	0.999961	TAG	synonymous	NA	NA	NA	NA
M3	chr2	87371819	12A2p6	cell line	sgMsh2	87371819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	236	0	0	NA	exonic	Olfr1121	nonsynonymous SNV	Olfr1121:NM_146348:exon1:c.A286G:p.R96G	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.766537818	2	0.7538722	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	87510243	12A2p6	cell line	sgMsh2	87510243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	106	0	0	NA	exonic	Pramel6	synonymous SNV	"Pramel6:NM_001356546:exon4:c.C918T:p.C306C,Pramel6:NM_178249:exon4:c.C918T:p.C306C,Pramel6:NM_001356544:exon5:c.C918T:p.C306C,Pramel6:NM_001356545:exon5:c.C918T:p.C306C"	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.770820152	1	6.85E-08	GCC	synonymous	NA	NA	NA	NA
M3	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	209	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.565268112	2	0.9999224	AGG	synonymous	NA	NA	NA	NA
M3	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.27	352	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
M3	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	206	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.702302805	2	0.992348	AAT	synonymous	NA	NA	NA	NA
M3	chr2	87783116	12A2p6	cell line	sgMsh2	87783116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	271	0	0	NA	exonic	Olfr152	nonsynonymous SNV	Olfr152:NM_146646:exon1:c.C581T:p.T194M	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.620938456	2	0.9999989	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	267	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.80936116	1	0.8868063	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	281	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.856466836	1	0.9979256	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	88034611	12A2p6	cell line	sgMsh2	88034611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	123	0	0	NA	exonic	Olfr73	nonsynonymous SNV	Olfr73:NM_054090:exon1:c.A527G:p.N176S	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.826490496	1	0.9218616	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	88034913	12A2p6	cell line	sgMsh2	88034913	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.153	247	0	0	NA	exonic	Olfr73	synonymous SNV	Olfr73:NM_054090:exon1:c.C225T:p.S75S	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9999418	AGG	synonymous	NA	NA	NA	NA
M3	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	445	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.972089858	1	1.02E-09	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	317	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.980654527	1	6.97E-09	CTG	synonymous	NA	NA	NA	NA
M3	chr2	88412110	12A2p6	cell line	sgMsh2	88412110	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	186	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.G547A:p.A183T	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.796514157	1	0.7655238	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	155	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.57383278	2	0.9996477	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M3	chr2	88423997	12A2p6	cell line	sgMsh2	88423997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	240	0	0	NA	exonic	Olfr1181	synonymous SNV	Olfr1181:NM_001011816:exon1:c.A27G:p.E9E	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.406821747	3	0.9979	ATT	synonymous	NA	NA	NA	NA
M3	chr2	88446489	12A2p6	cell line	sgMsh2	88446489	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	281	0	0	NA	exonic	Olfr1182	nonsynonymous SNV	Olfr1182:NM_001011535:exon3:c.G448T:p.G150C	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	8.95E-09	CCA	nonsynonymous	CAC	8	CACCACCA	NA
M3	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	137	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.518162436	2	0.9848829	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	88682850	12A2p6	cell line	sgMsh2	88682850	T	-	Deletion	Strelka2;Vardict	2	0.0672	119	0	0	NA	exonic	Olfr1195	frameshift deletion	Olfr1195:NM_146753:exon1:c.881delA:p.N294Mfs*2	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.287772857	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr2	88701308	12A2p6	cell line	sgMsh2	88701308	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	261	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T20A:p.V7D	2qD	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9999695	GAC	nonsynonymous	T	5	TTTTT	NA
M3	chr2	88767458	12A2p6	cell line	sgMsh2	88767458	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	357	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.A856T:p.T286S	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.531009438	2	0.9998959	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	88794555	12A2p6	cell line	sgMsh2	88794555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	359	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.T172C:p.Y58H	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.663761798	2	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	88865422	12A2p6	cell line	sgMsh2	88865422	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.107	327	0	0	NA	exonic	Olfr1206	nonsynonymous SNV	Olfr1206:NM_001001810:exon1:c.T816G:p.F272L	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.458209757	3	0.8653625	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	88865425	12A2p6	cell line	sgMsh2	88865425	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.11	331	0	0	NA	exonic	Olfr1206	synonymous SNV	Olfr1206:NM_001001810:exon1:c.T819C:p.Y273Y	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.47105676	3	0.5110358	ATA	synonymous	NA	NA	NA	NA
M3	chr2	88896946	12A2p6	cell line	sgMsh2	88896946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	319	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.T650C:p.I217T	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.91213718	1	0.9999954	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
M3	chr2	88909930	12A2p6	cell line	sgMsh2	88909930	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	226	0	0	NA	exonic	Olfr1209	synonymous SNV	Olfr1209:NM_146461:exon1:c.T462G:p.S154S	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.835055165	1	0.9778069	AAG	synonymous	NA	NA	NA	NA
M3	chr2	89013584	12A2p6	cell line	sgMsh2	89013584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	354	0	0	NA	exonic	Olfr1216	nonsynonymous SNV	Olfr1216:NM_146893:exon1:c.T479C:p.I160T	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.723714476	2	0.9992331	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	89296493	12A2p6	cell line	sgMsh2	89296493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	204	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.C776A:p.P259H	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.702302805	2	0.9918556	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	89296783	12A2p6	cell line	sgMsh2	89296783	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	165	0	0	NA	exonic	Olfr1230	stopgain	Olfr1230:NM_146789:exon1:c.T486A:p.Y162X	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.659479463	2	0.9968643	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	162	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	0.9999892	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	89325960	12A2p6	cell line	sgMsh2	89325960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	109	0	0	NA	exonic	Olfr1232	synonymous SNV	Olfr1232:NM_146323:exon1:c.C219A:p.S73S	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.488186096	2	0.9139853	AGG	synonymous	NA	NA	NA	NA
M3	chr2	89340100	12A2p6	cell line	sgMsh2	89340100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	272	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.T201C:p.Y67Y	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.9758058	AAT	synonymous	NA	NA	NA	NA
M3	chr2	89657305	12A2p6	cell line	sgMsh2	89657305	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	424	0	0	NA	exonic	Olfr1250	frameshift deletion	Olfr1250:NM_146965:exon1:c.135delG:p.T46Qfs*1	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.509597767	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3	chr2	89752713	12A2p6	cell line	sgMsh2	89752713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	366	0	0	NA	exonic	Olfr1253	synonymous SNV	Olfr1253:NM_146373:exon1:c.G114A:p.V38V	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.792231823	1	0.5710292	CCA	synonymous	NA	NA	NA	NA
M3	chr2	89977882	12A2p6	cell line	sgMsh2	89977882	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	257	0	0	NA	exonic	Olfr1260	nonsynonymous SNV	Olfr1260:NM_146981:exon1:c.C103T:p.L35F	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.393974744	3	0.9997295	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	90149288	12A2p6	cell line	sgMsh2	90149288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	382	0	0	NA	exonic	Olfr1270	synonymous SNV	Olfr1270:NM_146985:exon1:c.C717A:p.A239A	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.736561479	2	0.9982548	AGG	synonymous	NA	NA	NA	NA
M3	chr2	90459713	12A2p6	cell line	sgMsh2	90459713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	54	83	10	0.120481928	exonic	Ptprj	synonymous SNV	"Ptprj:NM_001135657:exon9:c.G1641A:p.R547R,Ptprj:NM_008982:exon9:c.G1584A:p.R528R"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	0.9924912	GCC	synonymous	NA	NA	NA	NA
M3	chr2	90721339	12A2p6	cell line	sgMsh2	90721339	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	101	48	2	0.041666667	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon29:c.T3337C:p.S1113P	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.355433737	3	0.9714481	CTC	nonsynonymous	CAGC	9	CAGCCAGCC	NA
M3	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	304	40	10	0.25	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	2.97E-09	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	91190884	12A2p6	cell line	sgMsh2	91190884	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	86	41	17	0.414634146	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon5:c.A557C:p.Q186P,Nr1h3:NM_001355279:exon5:c.A557C:p.Q186P,Nr1h3:NM_013839:exon5:c.A557C:p.Q186P"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	1	1	0.9989147	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	91212313	12A2p6	cell line	sgMsh2	91212313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	260	86	22	0.255813953	exonic	Ddb2	nonsynonymous SNV	"Ddb2:NM_001362705:exon5:c.A634G:p.N212D,Ddb2:NM_028119:exon9:c.A1201G:p.N401D"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	2	0.959242856	1	0.9999992	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	58	8	0.137931034	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	0.7311887	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	91480474	12A2p6	cell line	sgMsh2	91480474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	55	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon14:c.A1859G:p.H620R	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.813643494	1	0.8550396	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	91568226	12A2p6	cell line	sgMsh2	91568226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	121	138	13	0.094202899	exonic	Ckap5	synonymous SNV	"Ckap5:NM_029437:exon13:c.A1740G:p.K580K,Ckap5:NM_001165989:exon14:c.A1740G:p.K580K"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.578115114	2	0.9981482	AAG	synonymous	NA	NA	NA	NA
M3	chr2	91649212	12A2p6	cell line	sgMsh2	91649212	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	115	25	2	0.08	exonic	Zfp408	nonsynonymous SNV	Zfp408:NM_001347175:exon2:c.G260A:p.G87E	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.578115114	2	0.9973828	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	91931373	12A2p6	cell line	sgMsh2	91931373	T	-	Deletion	Strelka2;Vardict	2	0.1649	97	1	0	0	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.706156906	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M3	chr2	92370771	12A2p6	cell line	sgMsh2	92370771	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	80	5	1	0.2	exonic	Large2	nonsynonymous SNV	"Large2:NM_001166633:exon2:c.T68C:p.V23A,Large2:NM_001290773:exon2:c.T68C:p.V23A,Large2:NM_172670:exon2:c.T68C:p.V23A"	2qE1	chr2-80837583-94430128	6	4	2	0.96	4.111040811	NA	1	0.385410076	3	0.7785087	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	97630410	12A2p6	cell line	sgMsh2	97630410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	187	0	0	NA	exonic	Lrrc4c	synonymous SNV	"Lrrc4c:NM_001289744:exon2:c.G1380A:p.E460E,Lrrc4c:NM_178725:exon3:c.G1380A:p.E460E,Lrrc4c:NM_001363049:exon4:c.G1380A:p.E460E,Lrrc4c:NM_001289743:exon7:c.G1380A:p.E460E,Lrrc4c:NM_001289742:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363048:exon8:c.G1380A:p.E460E,Lrrc4c:NM_001363047:exon9:c.G1380A:p.E460E"	2qE1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.505315433	2	0.9781184	AGA	synonymous	NA	NA	NA	NA
M3	chr2	101696760	12A2p6	cell line	sgMsh2	101696760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	141	48	9	0.1875	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.G854A:p.R285H,Traf6:NM_009424:exon8:c.G854A:p.R285H"	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	197	121	13	0.107438017	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.655197129	2	0.9994202	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	104685452	12A2p6	cell line	sgMsh2	104685452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	90	17	4	0.235294118	exonic	Tcp11l1	synonymous SNV	Tcp11l1:NM_177190:exon8:c.T1065C:p.S355S	2qE2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9991482	TAC	synonymous	NA	NA	NA	NA
M3	chr2	105387932	12A2p6	cell line	sgMsh2	105387932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	130	11	11	1	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon6:c.A965G:p.H322R	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9997251	ATG	nonsynonymous	T	5	TTTTT	NA
M3	chr2	107295542	12A2p6	cell line	sgMsh2	107295542	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	195	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A620C:p.E207A	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999985	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	107296706	12A2p6	cell line	sgMsh2	107296706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	139	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.T1784C:p.L595P	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7515296	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	109724136	12A2p6	cell line	sgMsh2	109724136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	94	107	34	0.317757009	exonic	Bdnf	nonsynonymous SNV	"Bdnf:NM_001285422:exon1:c.T734G:p.I245S,Bdnf:NM_001048139:exon2:c.T734G:p.I245S,Bdnf:NM_001048141:exon2:c.T734G:p.I245S,Bdnf:NM_001048142:exon2:c.T734G:p.I245S,Bdnf:NM_001285416:exon2:c.T734G:p.I245S,Bdnf:NM_001285417:exon2:c.T734G:p.I245S,Bdnf:NM_001285418:exon2:c.T734G:p.I245S,Bdnf:NM_001285419:exon2:c.T734G:p.I245S,Bdnf:NM_001285420:exon2:c.T734G:p.I245S,Bdnf:NM_001285421:exon2:c.T734G:p.I245S,Bdnf:NM_007540:exon2:c.T758G:p.I253S,Bdnf:NM_001316310:exon3:c.T734G:p.I245S"	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr2	110362795	12A2p6	cell line	sgMsh2	110362795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	82	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A1G:p.M1V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9986171	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr2	110738777	12A2p6	cell line	sgMsh2	110738777	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon11:c.A1003T:p.I335L,Ano3:NM_001128103:exon14:c.A1441T:p.I481L,Ano3:NM_001355245:exon14:c.A1441T:p.I481L"	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9437837	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr2	110884877	12A2p6	cell line	sgMsh2	110884877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	69	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001128103:exon2:c.T215C:p.F72S,Ano3:NM_001355245:exon2:c.T215C:p.F72S,Ano3:NM_001355246:exon2:c.T215C:p.F72S"	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	AAA	nonsynonymous	AGAA	9	AGAAAGAAA	NA
M3	chr2	111091876	12A2p6	cell line	sgMsh2	111091876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	109	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon58:c.T4194C:p.D1398D	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.999403	CAT	synonymous	NA	NA	NA	NA
M3	chr2	111139008	12A2p6	cell line	sgMsh2	111139008	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	117	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon35:c.T2632A:p.L878I	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	111270074	12A2p6	cell line	sgMsh2	111270074	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	143	0	0	NA	exonic	Olfr1277	nonsynonymous SNV	Olfr1277:NM_146396:exon1:c.A292C:p.M98L	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9924626	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.164	588	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.702302805	2	4.81E-08	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	111409018	12A2p6	cell line	sgMsh2	111409018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	341	0	0	NA	exonic	Olfr1285	nonsynonymous SNV	Olfr1285:NM_001370925:exon1:c.C515T:p.T172M	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	1.21E-09	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	194	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999984	AAT	synonymous	NA	NA	NA	NA
M3	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	225	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.770820152	2	0.6668962	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	112042552	12A2p6	cell line	sgMsh2	112042552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	286	0	0	NA	exonic	Olfr1312	nonsynonymous SNV	Olfr1312:NM_146362:exon1:c.T479C:p.V160A	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	6.87E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	112142466	12A2p6	cell line	sgMsh2	112142466	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	362	0	0	NA	exonic	Olfr1317	nonsynonymous SNV	Olfr1317:NM_146448:exon1:c.A520C:p.M174L	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.6766088	2	0.9999968	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	112825831	12A2p6	cell line	sgMsh2	112825831	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	126	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon38:c.A5819T:p.E1940V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	110	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9997466	AAC	nonsynonymous	A	5	AAAAA	NA
M3	chr2	113289743	12A2p6	cell line	sgMsh2	113289743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	79	0	0	NA	exonic	Tmco5b	synonymous SNV	Tmco5b:NM_029232:exon6:c.A363G:p.K121K	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.693738137	2	0.7469885	AAG	synonymous	NA	NA	NA	NA
M3	chr2	114118744	12A2p6	cell line	sgMsh2	114118744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	37	106	28	0.264150943	exonic	Aqr	nonsynonymous SNV	"Aqr:NM_001290788:exon26:c.A2972G:p.Y991C,Aqr:NM_009702:exon26:c.A2972G:p.Y991C"	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9792282	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	91	37	7	0.189189189	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.975657	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	191	160	46	0.2875	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9997982	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	118791987	12A2p6	cell line	sgMsh2	118791987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	93	2	0	0	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3199C:p.C1067R	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	118917068	12A2p6	cell line	sgMsh2	118917068	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	33	26	3	0.115384615	exonic	Bahd1	synonymous SNV	Bahd1:NM_001045523:exon2:c.C1167T:p.C389C	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.973675	GCC	synonymous	NA	NA	NA	NA
M3	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.2097	124	26	0	0	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.898005477	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M3	chr2	119330981	12A2p6	cell line	sgMsh2	119330981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	49	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon8:c.A1043G:p.H348R	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	119425747	12A2p6	cell line	sgMsh2	119425747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	92	31	5	0.161290323	exonic	Ino80	nonsynonymous SNV	Ino80:NM_026574:exon22:c.T2608C:p.F870L	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.488186096	2	0.9130709	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	41	20	7	0.35	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9836294	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	119778184	12A2p6	cell line	sgMsh2	119778184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	61	49	13	0.265306122	exonic	Rpap1	synonymous SNV	"Rpap1:NM_001163701:exon6:c.A696G:p.V232V,Rpap1:NM_177294:exon7:c.A696G:p.V232V"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	CTA	synonymous	NA	NA	NA	NA
M3	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	89	46	11	0.239130435	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.736561479	2	0.5609055	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M3	chr2	119921746	12A2p6	cell line	sgMsh2	119921746	T	-	Deletion	Mutect2;Strelka2	2	0.311	136	48	0	0	exonic	Mga	frameshift deletion	"Mga:NM_001164274:exon7:c.2320delT:p.P775Lfs*38,Mga:NM_013720:exon7:c.2320delT:p.P775Lfs*38"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr2	119921751	12A2p6	cell line	sgMsh2	119921751	T	C	SNV	Mutect2;Strelka2	2	0.32	145	51	5	0.098039216	exonic	Mga	synonymous SNV	"Mga:NM_001164274:exon7:c.T2325C:p.P775P,Mga:NM_013720:exon7:c.T2325C:p.P775P"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999697	CTT	synonymous	NA	NA	NA	NA
M3	chr2	120021181	12A2p6	cell line	sgMsh2	120021181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	50	5	0	0	exonic	Mapkbp1	nonsynonymous SNV	"Mapkbp1:NM_011941:exon22:c.T2585C:p.V862A,Mapkbp1:NM_001355293:exon23:c.T2603C:p.V868A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.548138775	2	0.8916772	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	120030127	12A2p6	cell line	sgMsh2	120030127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	182	9	7	0.777777778	exonic	Jmjd7	stopgain	Jmjd7:NM_001114637:exon2:c.G134A:p.W45X	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999968	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	120191292	12A2p6	cell line	sgMsh2	120191292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	66	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.A334G:p.T112A,Pla2g4e:NM_001363090:exon4:c.A67G:p.T23A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	120320682	12A2p6	cell line	sgMsh2	120320682	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.375	52	42	3	0.071428571	exonic	Vps39	frameshift deletion	"Vps39:NM_001363053:exon22:c.2361delT:p.K788Rfs*20,Vps39:NM_001363054:exon22:c.2058delT:p.K687Rfs*20,Vps39:NM_178851:exon23:c.2430delT:p.K811Rfs*20,Vps39:NM_147153:exon24:c.2463delT:p.K822Rfs*20"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3	chr2	120406277	12A2p6	cell line	sgMsh2	120406277	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	79	19	1	0.052631579	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon2:c.A41T:p.E14V	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.638067793	2	0.9196097	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	120430999	12A2p6	cell line	sgMsh2	120430999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	125	7	3	0.428571429	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon10:c.A959C:p.D320A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998979	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	70	10	0	0	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9645395	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	120748632	12A2p6	cell line	sgMsh2	120748632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	167	31	8	0.258064516	exonic	Ttbk2	nonsynonymous SNV	"Ttbk2:NM_001024857:exon13:c.G1801T:p.G601C,Ttbk2:NM_001024856:exon14:c.G1801T:p.G601C,Ttbk2:NM_080788:exon14:c.G2008T:p.G670C"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.999992	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	120977781	12A2p6	cell line	sgMsh2	120977781	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	128	11	4	0.363636364	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon2:c.T263G:p.I88S	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9990039	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr2	120986661	12A2p6	cell line	sgMsh2	120986661	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	103	15	7	0.466666667	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon6:c.A697G:p.T233A	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9996126	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	54	55	15	0.272727273	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.787949489	1	0.7929026	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	121307586	12A2p6	cell line	sgMsh2	121307586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	58	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon5:c.A8026G:p.S2676G,Map1a:NM_032393:exon6:c.A8740G:p.S2914G"	2qE5	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.723714476	1	0.5424733	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	5	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	126594161	12A2p6	cell line	sgMsh2	126594161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	76	0	0	NA	exonic	Hdc	nonsynonymous SNV	Hdc:NM_008230:exon12:c.T1789C:p.S597P	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.8947159	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	171	84	1	0.011904762	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9993466	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	96	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994079	TTA	synonymous	NA	NA	NA	NA
M3	chr2	127529468	12A2p6	cell line	sgMsh2	127529468	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	83	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon21:c.T2269G:p.C757G,Prom2:NM_178047:exon21:c.T2269G:p.C757G"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986984	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	127656060	12A2p6	cell line	sgMsh2	127656060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	40	14	5	0.357142857	exonic	Mal	nonsynonymous SNV	"Mal:NM_001171187:exon1:c.T74C:p.L25S,Mal:NM_010762:exon1:c.T74C:p.L25S"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9826236	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	128685915	12A2p6	cell line	sgMsh2	128685915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	106	59	11	0.186440678	exonic	Anapc1	nonsynonymous SNV	Anapc1:NM_008569:exon2:c.A122G:p.Q41R	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9978495	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	129199995	12A2p6	cell line	sgMsh2	129199995	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	117	66	14	0.212121212	exonic	Slc20a1	nonsynonymous SNV	"Slc20a1:NM_001159593:exon2:c.T277A:p.L93M,Slc20a1:NM_015747:exon2:c.T277A:p.L93M"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	131	59	22	0.372881356	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999291	GTA	synonymous	NA	NA	NA	NA
M3	chr2	129285010	12A2p6	cell line	sgMsh2	129285010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	165	53	3	0.056603774	exonic	Ckap2l	nonsynonymous SNV	Ckap2l:NM_181589:exon4:c.A1247C:p.D416A	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.723714476	2	0.9229995	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	129460444	12A2p6	cell line	sgMsh2	129460444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	266	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon5:c.A1227G:p.V409V,F830045P16Rik:NM_177653:exon5:c.A1227G:p.V409V"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	2.07E-08	TTA	synonymous	NA	NA	NA	NA
M3	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.358	147	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	130047744	12A2p6	cell line	sgMsh2	130047744	C	-	Deletion	Strelka2;Vardict	2	0.119	42	0	0	NA	exonic	Tgm3	frameshift deletion	Tgm3:NM_009374:exon12:c.1857delC:p.L621Wfs*4	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.509597767	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3	chr2	130101276	12A2p6	cell line	sgMsh2	130101276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	171	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.T753C:p.T251T	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.582397448	2	0.9998815	CTC	synonymous	NA	NA	NA	NA
M3	chr2	130240140	12A2p6	cell line	sgMsh2	130240140	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	159	0	0	NA	exonic	Tmc2	frameshift deletion	Tmc2:NM_138655:exon11:c.1242delG:p.A415Pfs*19	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.946395853	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3	chr2	130405550	12A2p6	cell line	sgMsh2	130405550	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.307	40	0	0	NA	exonic	1700020A23Rik	frameshift insertion	"1700020A23Rik:NM_001163483:exon1:c.6dupC:p.W5Lfs*44,1700020A23Rik:NM_029375:exon2:c.6dupC:p.W5Lfs*44"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
M3	chr2	130616347	12A2p6	cell line	sgMsh2	130616347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	148	27	5	0.185185185	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.A187G:p.T63A,Fastkd5:NM_001377125:exon2:c.A187G:p.T63A,Fastkd5:NM_001146084:exon3:c.A187G:p.T63A,Fastkd5:NM_198176:exon3:c.A187G:p.T63A"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.702302805	2	0.9544446	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	130970141	12A2p6	cell line	sgMsh2	130970141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	64	19	3	0.157894737	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon12:c.A2005T:p.T669S	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9706053	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	43	68	17	0.25	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.492468431	2	0.8559803	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr2	131953400	12A2p6	cell line	sgMsh2	131953400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	39	0	0	NA	exonic	Prn;Prnd	nonsynonymous SNV	"Prnd:NM_001126338:exon2:c.A385G:p.K129E,Prnd:NM_001278257:exon2:c.A385G:p.K129E,Prnd:NM_001278520:exon2:c.A385G:p.K129E,Prnd:NM_023043:exon2:c.A385G:p.K129E,Prn:NM_001278258:exon4:c.A439G:p.K147E,Prn:NM_001278259:exon4:c.A439G:p.K147E"	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9815572	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	76	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9965397	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	133	34	8	0.235294118	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.9682773	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr2	134988178	12A2p6	cell line	sgMsh2	134988178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	74	5	1	0.2	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon3:c.G232A:p.A78T,Plcb1:NM_019677:exon3:c.G232A:p.A78T"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9977555	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr2	135877460	12A2p6	cell line	sgMsh2	135877460	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	170	0	0	NA	exonic	Plcb4	synonymous SNV	"Plcb4:NM_001355154:exon3:c.A63G:p.A21A,Plcb4:NM_001355153:exon4:c.A63G:p.A21A,Plcb4:NM_001355155:exon4:c.A63G:p.A21A,Plcb4:NM_013829:exon4:c.A63G:p.A21A"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7300161	CAG	synonymous	T	5	TTTTT	NA
M3	chr2	136756134	12A2p6	cell line	sgMsh2	136756134	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	exonic	Snap25	nonsynonymous SNV	"Snap25:NM_001291056:exon2:c.C5A:p.A2D,Snap25:NM_001355254:exon2:c.C5A:p.A2D,Snap25:NM_001355255:exon2:c.C5A:p.A2D,Snap25:NM_011428:exon2:c.C5A:p.A2D"	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	136769755	12A2p6	cell line	sgMsh2	136769755	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	154	0	0	NA	exonic	Snap25	nonsynonymous SNV	Snap25:NM_001291056:exon5:c.G176A:p.R59H	2qF3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999824	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr2	142848001	12A2p6	cell line	sgMsh2	142848001	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	74	15	0.202702703	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon9:c.C990T:p.I330I,Kif16b:NM_001355123:exon9:c.C990T:p.I330I"	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9978607	TGA	synonymous	NA	NA	NA	NA
M3	chr2	144502992	12A2p6	cell line	sgMsh2	144502992	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	92	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon9:c.A844C:p.N282H,Dzank1:NM_001360362:exon9:c.A844C:p.N282H,Dzank1:NM_001360363:exon9:c.A844C:p.N282H,Dzank1:NM_172859:exon9:c.A844C:p.N282H"	2qG1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	149407305	12A2p6	cell line	sgMsh2	149407305	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	227	0	0	NA	exonic	Cst10	nonsynonymous SNV	Cst10:NM_021405:exon2:c.T274G:p.L92V	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9998997	CTT	nonsynonymous	ACT	9	ACTACTACT	NA
M3	chr2	150625090	12A2p6	cell line	sgMsh2	150625090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	85	6	2	0.333333333	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.A1586G:p.H529R	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9988469	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr2	151706653	12A2p6	cell line	sgMsh2	151706653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	44	0	0	NA	exonic	Tmem74b	nonsynonymous SNV	Tmem74b:NM_001160363:exon2:c.T299C:p.V100A	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9863153	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr2	152441250	12A2p6	cell line	sgMsh2	152441250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	229	0	0	NA	exonic	6820408C15Rik	nonsynonymous SNV	"6820408C15Rik:NM_001379452:exon6:c.T626C:p.L209P,6820408C15Rik:NM_001289738:exon10:c.T836C:p.L279P,6820408C15Rik:NM_177656:exon10:c.T833C:p.L278P"	2qG3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9999721	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
M3	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	133	136	17	0.125	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.762255484	2	6.47E-09	CTG	synonymous	NA	NA	NA	NA
M3	chr2	153392875	12A2p6	cell line	sgMsh2	153392875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	154	78	24	0.307692308	exonic	Asxl1	nonsynonymous SNV	Asxl1:NM_001039939:exon6:c.T506A:p.L169Q	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.5081773	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	154504560	12A2p6	cell line	sgMsh2	154504560	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	62	5	1	0.2	exonic	Cbfa2t2	nonsynonymous SNV	"Cbfa2t2:NM_009823:exon3:c.T186A:p.N62K,Cbfa2t2:NM_172860:exon3:c.T186A:p.N62K"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9836179	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr2	154625009	12A2p6	cell line	sgMsh2	154625009	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	35	2	0	0	exonic	Zfp341	synonymous SNV	Zfp341:NM_199304:exon3:c.A297T:p.A99A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.976612	CAC	synonymous	CAG	8	CAGCAGCA	NA
M3	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1284	109	146	0	0	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.549851709	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M3	chr2	155437993	12A2p6	cell line	sgMsh2	155437993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	116	55	12	0.218181818	exonic	Ncoa6	synonymous SNV	"Ncoa6:NM_001242558:exon2:c.T102C:p.D34D,Ncoa6:NM_019825:exon2:c.T102C:p.D34D"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CAT	synonymous	TCA	8	TCATCATC	NA
M3	chr2	155814108	12A2p6	cell line	sgMsh2	155814108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	84	2	2	1	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon8:c.G1465A:p.V489M	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7470861	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	122	114	27	0.236842105	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.715149808	2	0.8507226	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	156264345	12A2p6	cell line	sgMsh2	156264345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	202	127	33	0.25984252	exonic	Phf20	synonymous SNV	Phf20:NM_172674:exon5:c.T405G:p.A135A	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.999999	CTT	synonymous	T	5	TTTTT	NA
M3	chr2	156312789	12A2p6	cell line	sgMsh2	156312789	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.299	63	5	2	0.4	exonic	Cnbd2	nonsynonymous SNV	"Cnbd2:NM_001316755:exon1:c.C257T:p.P86L,Cnbd2:NM_027585:exon1:c.C257T:p.P86L"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	156525099	12A2p6	cell line	sgMsh2	156525099	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.195	98	16	1	0.0625	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291121:exon15:c.T1851C:p.H617H,Epb41l1:NM_001368802:exon15:c.T1884C:p.H628H,Epb41l1:NM_001368804:exon15:c.T1887C:p.H629H,Epb41l1:NM_013510:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291120:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368801:exon16:c.T1863C:p.H621H,Epb41l1:NM_001368803:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368800:exon18:c.T3918C:p.H1306H"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.9277752	ATG	synonymous	NA	NA	NA	NA
M3	chr2	157020825	12A2p6	cell line	sgMsh2	157020825	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	36	27	7	0.259259259	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon14:c.C4183T:p.H1395Y	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.870782	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	307	99	27	0.272727273	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	2.64E-09	TAT	synonymous	NA	NA	NA	NA
M3	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	61	197	55	0.279187817	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	GCG	synonymous	NA	NA	NA	NA
M3	chr2	158547781	12A2p6	cell line	sgMsh2	158547781	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	55	4	0	0	exonic	Arhgap40	nonsynonymous SNV	Arhgap40:NM_001145015:exon13:c.A1864C:p.S622R	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.710867474	1	0.5064954	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	37	5	1	0.2	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.672326466	1	0.5246289	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	160908277	12A2p6	cell line	sgMsh2	160908277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	63	0	0	NA	exonic	Emilin3	synonymous SNV	"Emilin3:NM_001291145:exon4:c.T1410C:p.S470S,Emilin3:NM_182840:exon4:c.T1551C:p.S517S"	2qH2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	TAC	synonymous	GTG	8	GTGGTGGT	NA
M3	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	190	53	6	0.113207547	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.999998	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M3	chr2	163568959	12A2p6	cell line	sgMsh2	163568959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	93	218	40	0.183486239	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon9:c.A1202G:p.N401S,Hnf4a:NM_001312906:exon10:c.A1127G:p.N376S,Hnf4a:NM_001312907:exon10:c.A1127G:p.N376S"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992898	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr2	164054766	12A2p6	cell line	sgMsh2	164054766	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	55	121	31	0.256198347	exonic	Tomm34	nonsynonymous SNV	"Tomm34:NM_001291155:exon6:c.C760A:p.L254I,Tomm34:NM_025996:exon6:c.C760A:p.L254I"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	164178531	12A2p6	cell line	sgMsh2	164178531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	76	0	0	NA	exonic	Wfdc5	nonsynonymous SNV	Wfdc5:NM_145369:exon3:c.T340C:p.C114R	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	164777838	12A2p6	cell line	sgMsh2	164777838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	111	0	0	NA	exonic	Tnnc2	synonymous SNV	Tnnc2:NM_009394:exon4:c.T207C:p.G69G	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997615	TAC	synonymous	NA	NA	NA	NA
M3	chr2	165277452	12A2p6	cell line	sgMsh2	165277452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	30	12	2	0.166666667	exonic	Slc35c2	nonsynonymous SNV	"Slc35c2:NM_001252573:exon9:c.G967T:p.G323C,Slc35c2:NM_001252574:exon9:c.G967T:p.G323C,Slc35c2:NM_001252575:exon9:c.G625T:p.G209C,Slc35c2:NM_001363016:exon9:c.G967T:p.G323C,Slc35c2:NM_144893:exon9:c.G967T:p.G323C,Slc35c2:NM_001363015:exon10:c.G967T:p.G323C"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9685855	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	166951271	12A2p6	cell line	sgMsh2	166951271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	179	175	53	0.302857143	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon8:c.A925G:p.S309G,Stau1:NM_001109906:exon8:c.A943G:p.S315G,Stau1:NM_001291160:exon8:c.A925G:p.S309G,Stau1:NM_011490:exon8:c.A919G:p.S307G"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999961	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	168098525	12A2p6	cell line	sgMsh2	168098525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	64	81	25	0.308641975	exonic	Pard6b	nonsynonymous SNV	Pard6b:NM_021409:exon3:c.C431T:p.S144F	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9958915	TCC	nonsynonymous	CATC	8	CATCCATC	NA
M3	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	213	284	85	0.299295775	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999995	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	168648698	12A2p6	cell line	sgMsh2	168648698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	89	0	0	NA	exonic	Atp9a	nonsynonymous SNV	"Atp9a:NM_001289445:exon21:c.T2159A:p.V720D,Atp9a:NM_001289446:exon21:c.T2153A:p.V718D,Atp9a:NM_001354977:exon21:c.T2141A:p.V714D,Atp9a:NM_001354978:exon21:c.T1919A:p.V640D,Atp9a:NM_015731:exon21:c.T2207A:p.V736D"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.999095	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr2	168926540	12A2p6	cell line	sgMsh2	168926540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	111	54	20	0.37037037	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.T1151C:p.L384P	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.61608	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	131	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999291	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	71	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.693738137	2	0.6920795	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr2	174285433	12A2p6	cell line	sgMsh2	174285433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	32	1	0	0	exonic	Gnas	stoploss	"Gnas:NM_019690:exon2:c.T760C:p.X254Q,Gnas:NM_022000:exon2:c.T760C:p.X254Q"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9495259	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	27	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9625481	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	72	28	11	0.392857143	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	CTA	synonymous	NA	NA	NA	NA
M3	chr2	178354939	12A2p6	cell line	sgMsh2	178354939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	145	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon34:c.C3470T:p.P1157L	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999697	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr2	178460725	12A2p6	cell line	sgMsh2	178460725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	96	0	0	NA	exonic	Cdh26	synonymous SNV	"Cdh26:NM_001291189:exon6:c.A684G:p.P228P,Cdh26:NM_198656:exon6:c.A684G:p.P228P"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9993676	CAT	synonymous	NA	NA	NA	NA
M3	chr2	179797475	12A2p6	cell line	sgMsh2	179797475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	53	0	0	NA	exonic	Cdh4	synonymous SNV	"Cdh4:NM_001316723:exon4:c.C414T:p.A138A,Cdh4:NM_009867:exon4:c.C414T:p.A138A"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	CCC	synonymous	NA	NA	NA	NA
M3	chr2	180257790	12A2p6	cell line	sgMsh2	180257790	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	212	1703	459	0.269524369	exonic	Rps21	nonsynonymous SNV	"Rps21:NM_001355516:exon2:c.C53T:p.S18F,Rps21:NM_001355517:exon3:c.C53T:p.S18F,Rps21:NM_001355518:exon3:c.C53T:p.S18F,Rps21:NM_001355520:exon3:c.C53T:p.S18F,Rps21:NM_001355521:exon3:c.C53T:p.S18F,Rps21:NM_025587:exon3:c.C53T:p.S18F"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999995	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr2	180472194	12A2p6	cell line	sgMsh2	180472194	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	114	8	1	0.125	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon7:c.C1423A:p.L475I,Slco4a1:NM_148933:exon7:c.C1423A:p.L475I"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	88	96	23	0.239583333	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.560985777	2	0.9877504	ATC	nonsynonymous	A	5	AAAAA	NA
M3	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	185	11	1	0.090909091	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.96	4.111040811	NA	1	0.715149808	2	0.9698224	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr2	181864501	12A2p6	cell line	sgMsh2	181864501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	96	173	43	0.248554913	exonic	Polr3k	nonsynonymous SNV	Polr3k:NM_025901:exon1:c.G43A:p.E15K	2qH4	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GGA	nonsynonymous	GGA	8	GGAGGAGG	NA
M3	chr3	5243737	12A2p6	cell line	sgMsh2	5243737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	115	25	8	0.32	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon2:c.T2022C:p.Y674Y,Zfhx4:NM_030708:exon2:c.T2022C:p.Y674Y"	3qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
M3	chr3	5411830	12A2p6	cell line	sgMsh2	5411830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	51	23	2	0.086956522	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon11:c.A9507G:p.S3169S,Zfhx4:NM_030708:exon11:c.A9429G:p.S3143S"	3qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M3	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	135	24	6	0.25	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr3	6620089	12A2p6	cell line	sgMsh2	6620089	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	103	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon1:c.C304A:p.L102I	3qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGG	nonsynonymous	GAAG	9	GAAGGAAGG	NA
M3	chr3	7528672	12A2p6	cell line	sgMsh2	7528672	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	129	65	0	0	exonic	Zc2hc1a	frameshift deletion	Zc2hc1a:NM_173181:exon7:c.689delC:p.Q232Rfs*30	3qA1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M3	chr3	10420289	12A2p6	cell line	sgMsh2	10420289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	196	32	10	0.3125	exonic	Snx16	synonymous SNV	Snx16:NM_029068:exon7:c.A846G:p.S282S	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9998315	GTG	synonymous	NA	NA	NA	NA
M3	chr3	14481277	12A2p6	cell line	sgMsh2	14481277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	224	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.A481G:p.K161E	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr3	14537323	12A2p6	cell line	sgMsh2	14537323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	70	31	4	0.129032258	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon4:c.A475G:p.T159A,Lrrcc1:NM_001163580:exon4:c.A475G:p.T159A,Lrrcc1:NM_028915:exon4:c.A475G:p.T159A"	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9971411	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	15548787	12A2p6	cell line	sgMsh2	15548787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	381	0	0	NA	exonic	Sirpb1b	synonymous SNV	Sirpb1b:NM_001173460:exon2:c.G234T:p.S78S	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.5576964	ACG	synonymous	NA	NA	NA	NA
M3	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	88	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9990385	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	93	27	2	0.074074074	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.745126147	2	0.520445	ACA	synonymous	NA	NA	NA	NA
M3	chr3	20315918	12A2p6	cell line	sgMsh2	20315918	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	171	0	0	NA	exonic	Agtr1b	nonsynonymous SNV	Agtr1b:NM_175086:exon2:c.A523C:p.T175P	3qA2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.852184501	1	0.9846605	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr3	27126892	12A2p6	cell line	sgMsh2	27126892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	67	113	26	0.230088496	exonic	Ect2	synonymous SNV	"Ect2:NM_001177625:exon16:c.T1719C:p.A573A,Ect2:NM_001177626:exon16:c.T1719C:p.A573A,Ect2:NM_007900:exon17:c.T1812C:p.A604A"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9965726	AAG	synonymous	NA	NA	NA	NA
M3	chr3	28646635	12A2p6	cell line	sgMsh2	28646635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	96	0	0	NA	exonic	Tnik	synonymous SNV	"Tnik:NM_001163008:exon22:c.T2649C:p.S883S,Tnik:NM_001163007:exon23:c.T2736C:p.S912S,Tnik:NM_001163009:exon23:c.T2736C:p.S912S,Tnik:NM_026910:exon24:c.T2760C:p.S920S"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994079	GTA	synonymous	NA	NA	NA	NA
M3	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	199	30	2	0.066666667	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9999816	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr3	34049256	12A2p6	cell line	sgMsh2	34049256	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	158	450	130	0.288888889	exonic	Fxr1	nonsynonymous SNV	"Fxr1:NM_001113188:exon8:c.G734T:p.R245M,Fxr1:NM_001113189:exon8:c.G734T:p.R245M,Fxr1:NM_008053:exon8:c.G734T:p.R245M"	3qA3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.9243486	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	174	26	7	0.269230769	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999948	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	40964054	12A2p6	cell line	sgMsh2	40964054	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	66	18	3	0.166666667	exonic	Larp1b	nonsynonymous SNV	"Larp1b:NM_001368221:exon3:c.G129T:p.E43D,Larp1b:NM_001040399:exon4:c.G129T:p.E43D,Larp1b:NM_001368222:exon4:c.G129T:p.E43D"	3qB	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.745126147	1	0.600873	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr3	41727115	12A2p6	cell line	sgMsh2	41727115	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	187	10	2	0.2	exonic	Sclt1	nonsynonymous SNV	Sclt1:NM_001081411:exon5:c.A268C:p.T90P	3qB	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999976	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	45392762	12A2p6	cell line	sgMsh2	45392762	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	52	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.G2991T:p.E997D,Pcdh10:NM_001098171:exon4:c.G2991T:p.E997D,Pcdh10:NM_001098172:exon4:c.G2991T:p.E997D"	3qB	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9915312	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	49745181	12A2p6	cell line	sgMsh2	49745181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	81	2	0	0	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.G2831A:p.S944N	3qC	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9980761	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr3	53857973	12A2p6	cell line	sgMsh2	53857973	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	121	258	75	0.290697674	exonic	Ufm1	synonymous SNV	Ufm1:NM_026435:exon6:c.C213A:p.G71G	3qC	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998699	AGC	synonymous	NA	NA	NA	NA
M3	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	112	131	27	0.20610687	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.710867474	2	0.8339735	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	27	0	0	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999853	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	161	30	3	0.1	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999885	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	50	192	8	0.041666667	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.783667155	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr3	59319520	12A2p6	cell line	sgMsh2	59319520	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	149	0	0	NA	exonic	Igsf10	stopgain	Igsf10:NM_001162884:exon7:c.G6731A:p.W2244X	3qD	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999762	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr3	59329502	12A2p6	cell line	sgMsh2	59329502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	149	1	0	0	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.C3257A:p.A1086D	3qD	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9970024	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	62602681	12A2p6	cell line	sgMsh2	62602681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	72	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon2:c.G1012A:p.G338R,Gpr149:NM_177346:exon2:c.G1012A:p.G338R"	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr3	62604041	12A2p6	cell line	sgMsh2	62604041	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	28	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.C536T:p.T179M,Gpr149:NM_177346:exon1:c.C536T:p.T179M"	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9646755	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr3	67433363	12A2p6	cell line	sgMsh2	67433363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	139	76	13	0.171052632	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon3:c.T246C:p.G82G	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999563	GTA	synonymous	NA	NA	NA	NA
M3	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	74	42	7	0.166666667	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	69025824	12A2p6	cell line	sgMsh2	69025824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	130	148	1	0.006756757	exonic	Smc4	stopgain	"Smc4:NM_001356976:exon13:c.G1642T:p.G548X,Smc4:NM_133786:exon13:c.G1852T:p.G618X"	3qE1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999176	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	175	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999951	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	72909020	12A2p6	cell line	sgMsh2	72909020	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	55	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon40:c.C4612T:p.Q1538X	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9929299	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	72910423	12A2p6	cell line	sgMsh2	72910423	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	127	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon38:c.G4456T:p.G1486X	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999096	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr3	73051367	12A2p6	cell line	sgMsh2	73051367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	125	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.T71A:p.I24N,Slitrk3:NM_198864:exon2:c.T71A:p.I24N"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998979	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	75886735	12A2p6	cell line	sgMsh2	75886735	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	128	263	68	0.258555133	exonic	Golim4	nonsynonymous SNV	"Golim4:NM_175193:exon12:c.A1618T:p.S540C,Golim4:NM_001291069:exon13:c.A1702T:p.S568C"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.693738137	2	0.9400637	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	79512526	12A2p6	cell line	sgMsh2	79512526	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	176	24	7	0.291666667	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.G442T:p.G148C	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.9146398	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	167	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9998726	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	81967015	12A2p6	cell line	sgMsh2	81967015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	156	0	0	NA	exonic	Tdo2	synonymous SNV	Tdo2:NM_019911:exon7:c.A696G:p.K232K	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9999678	CTT	synonymous	NA	NA	NA	NA
M3	chr3	82108956	12A2p6	cell line	sgMsh2	82108956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	84	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon5:c.A724G:p.S242G,Gucy1a1:NM_001356988:exon5:c.A724G:p.S242G,Gucy1a1:NM_021896:exon5:c.A724G:p.S242G"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	82371381	12A2p6	cell line	sgMsh2	82371381	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	15	2	0.133333333	exonic	Map9	stopgain	"Map9:NM_001081230:exon5:c.C687A:p.Y229X,Map9:NM_001356457:exon5:c.C687A:p.Y229X"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9873124	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr3	82903682	12A2p6	cell line	sgMsh2	82903682	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	94	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.C31A:p.L11I	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993316	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
M3	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	176	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999954	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr3	83059350	12A2p6	cell line	sgMsh2	83059350	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	141	174	33	0.189655172	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon4:c.A283T:p.T95S	3qE3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999613	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	84594306	12A2p6	cell line	sgMsh2	84594306	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	166	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.529delA:p.N178Mfs*4	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr3	86787246	12A2p6	cell line	sgMsh2	86787246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	27	3	0	0	exonic	Dclk2	nonsynonymous SNV	"Dclk2:NM_001195497:exon16:c.A2234G:p.D745G,Dclk2:NM_027539:exon16:c.A2237G:p.D746G,Dclk2:NM_001195496:exon17:c.A2282G:p.D761G,Dclk2:NM_001357460:exon17:c.A2285G:p.D762G"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9625481	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr3	86998695	12A2p6	cell line	sgMsh2	86998695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	165	36	10	0.277777778	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379503:exon1:c.A176T:p.Y59F,Cd1d1:NM_007639:exon2:c.A272T:p.Y91F"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.999991	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr3	87443711	12A2p6	cell line	sgMsh2	87443711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.173	148	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon3:c.A263G:p.N88S,Fcrl5:NM_183222:exon4:c.A527G:p.N176S"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.740843813	2	0.7821109	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	87448357	12A2p6	cell line	sgMsh2	87448357	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon6:c.A1112C:p.E371A,Fcrl5:NM_183222:exon7:c.A1376C:p.E459A"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9961324	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	87698865	12A2p6	cell line	sgMsh2	87698865	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	56	33	6	0.181818182	exonic	Arhgef11	nonsynonymous SNV	"Arhgef11:NM_001360195:exon10:c.A806C:p.Q269P,Arhgef11:NM_001003912:exon11:c.A926C:p.Q309P"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9933432	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	88449705	12A2p6	cell line	sgMsh2	88449705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	60	6	1	0.166666667	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.A958G:p.I320V,Sema4a:NM_001163490:exon9:c.A958G:p.I320V,Sema4a:NM_001163491:exon9:c.A958G:p.I320V,Sema4a:NM_013658:exon9:c.A958G:p.I320V"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.918751	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr3	88651966	12A2p6	cell line	sgMsh2	88651966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	77	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A1177C:p.S393R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr3	88652659	12A2p6	cell line	sgMsh2	88652659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	63	1	0	0	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A484G:p.T162A	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr3	88911810	12A2p6	cell line	sgMsh2	88911810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	101	90	25	0.277777778	exonic	Msto1	nonsynonymous SNV	Msto1:NM_144898:exon7:c.T590C:p.L197P	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9995627	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	88982717	12A2p6	cell line	sgMsh2	88982717	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	91	39	13	0.333333333	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon2:c.A1902T:p.E634D	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	AAT	nonsynonymous	A	5	AAAAA	NA
M3	chr3	89188430	12A2p6	cell line	sgMsh2	89188430	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	36	54	8	0.148148148	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon10:c.G818T:p.R273M,Fam189b:NM_001014995:exon11:c.G1790T:p.R597M,Fam189b:NM_001355760:exon11:c.G1472T:p.R491M"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9779581	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	89208378	12A2p6	cell line	sgMsh2	89208378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	74	15	0.202702703	exonic	Gba	synonymous SNV	"Gba:NM_001077411:exon10:c.A1392G:p.T464T,Gba:NM_008094:exon11:c.A1392G:p.T464T"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	CAG	synonymous	NA	NA	NA	NA
M3	chr3	89736059	12A2p6	cell line	sgMsh2	89736059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	102	30	3	0.1	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon2:c.T502G:p.L168V,Adar:NM_001146296:exon2:c.T1246G:p.L416V,Adar:NM_001357958:exon2:c.T1363G:p.L455V,Adar:NM_019655:exon2:c.T1246G:p.L416V"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9914485	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	89781829	12A2p6	cell line	sgMsh2	89781829	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	42	98	0	0	exonic	Ube2q1	frameshift deletion	Ube2q1:NM_027315:exon12:c.1229delA:p.N412Tfs*29	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.847902167	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr3	90079835	12A2p6	cell line	sgMsh2	90079835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	40	522	119	0.227969349	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.T104C:p.V35A,Tpm3:NM_001253740:exon1:c.T104C:p.V35A,Tpm3:NM_001271764:exon1:c.T104C:p.V35A,Tpm3:NM_001293749:exon1:c.T104C:p.V35A,Tpm3:NM_001357581:exon1:c.T104C:p.V35A"	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9826236	GTG	nonsynonymous	GGAG	8	GGAGGGAG	NA
M3	chr3	90185515	12A2p6	cell line	sgMsh2	90185515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	77	2	0	0	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon28:c.A3775C:p.S1259R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	90211937	12A2p6	cell line	sgMsh2	90211937	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.232	107	2	0	0	exonic	Nup210l	frameshift insertion	Nup210l:NM_029937:exon40:c.5567dupC:p.H1859Sfs*25	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.993501529	NA	NA	TTC	frameshift	C	5	CCCCC	1
M3	chr3	90464836	12A2p6	cell line	sgMsh2	90464836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	31	2	0	0	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon1:c.A668G:p.H223R	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr3	92123213	12A2p6	cell line	sgMsh2	92123213	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	139	0	0	NA	exonic	Prr9	nonsynonymous SNV	Prr9:NM_175424:exon2:c.C119A:p.P40H	3qF1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999563	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	94779986	12A2p6	cell line	sgMsh2	94779986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	41	67	13	0.194029851	exonic	Cgn	nonsynonymous SNV	"Cgn:NM_001037711:exon2:c.T2C:p.M1T,Cgn:NM_001293727:exon2:c.T2C:p.M1T"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.8116412	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	95008613	12A2p6	cell line	sgMsh2	95008613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	56	50	10	0.2	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon6:c.T2939C:p.V980A,Zfp687:NM_030074:exon6:c.T2939C:p.V980A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9933432	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	258	67	0.259689922	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr3	95265568	12A2p6	cell line	sgMsh2	95265568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	42	108	18	0.166666667	exonic	Prune1	nonsynonymous SNV	Prune1:NM_173347:exon3:c.A185G:p.E62G	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9832422	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr3	95763832	12A2p6	cell line	sgMsh2	95763832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	41	44	7	0.159090909	exonic	Rprd2	nonsynonymous SNV	"Rprd2:NM_001368179:exon10:c.A4126G:p.M1376V,Rprd2:NM_001081293:exon11:c.A4258G:p.M1420V,Rprd2:NM_001368178:exon11:c.A4204G:p.M1402V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.787949489	1	8.58E-05	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr3	95847420	12A2p6	cell line	sgMsh2	95847420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	36	62	16	0.258064516	exonic	Prpf3	nonsynonymous SNV	"Prpf3:NM_001316751:exon6:c.A683G:p.N228S,Prpf3:NM_027541:exon6:c.A683G:p.N228S"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9779581	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	118	2	1	0.5	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr3	96699427	12A2p6	cell line	sgMsh2	96699427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	36	16	6	0.375	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.T32C:p.V11A,Pias3:NM_018812:exon2:c.T32C:p.V11A,Pias3:NM_146135:exon2:c.T5C:p.V2A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9779581	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr3	96699439	12A2p6	cell line	sgMsh2	96699439	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	35	18	6	0.333333333	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.G44C:p.R15P,Pias3:NM_018812:exon2:c.G44C:p.R15P,Pias3:NM_146135:exon2:c.G17C:p.R6P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.976612	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr3	96706991	12A2p6	cell line	sgMsh2	96706991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	46	34	6	0.176470588	exonic	Nudt17	nonsynonymous SNV	"Nudt17:NM_001162925:exon6:c.A701G:p.D234G,Nudt17:NM_030094:exon6:c.A650G:p.D217G"	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8516409	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr3	97562644	12A2p6	cell line	sgMsh2	97562644	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	298	49	10	0.204081633	exonic	Chd1l	frameshift deletion	Chd1l:NM_026539:exon22:c.2565delT:p.F855Lfs*66	3qF2.1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3	chr3	98104463	12A2p6	cell line	sgMsh2	98104463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	87	36	9	0.25	exonic	Notch2	nonsynonymous SNV	Notch2:NM_010928:exon11:c.A1796G:p.Y599C	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9939242	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	98126210	12A2p6	cell line	sgMsh2	98126210	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	116	58	11	0.189655172	exonic	Notch2	synonymous SNV	Notch2:NM_010928:exon22:c.C3621T:p.N1207N	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	ACC	synonymous	NA	NA	NA	NA
M3	chr3	102852167	12A2p6	cell line	sgMsh2	102852167	T	C	SNV	Mutect2;MuSe;Vardict	3	0.131	234	3	1	0.333333333	exonic	Sycp1	synonymous SNV	Sycp1:NM_011516:exon27:c.A2253G:p.G751G	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.560985777	2	0.9999493	GTC	synonymous	NA	NA	NA	NA
M3	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	73	15	1	0.066666667	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.702302805	2	0.6648089	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr3	103928888	12A2p6	cell line	sgMsh2	103928888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	126	42	11	0.261904762	exonic	Rsbn1	nonsynonymous SNV	"Rsbn1:NM_001356556:exon2:c.T1241C:p.I414T,Rsbn1:NM_001356557:exon2:c.T1235C:p.I412T,Rsbn1:NM_001356558:exon2:c.T1241C:p.I414T,Rsbn1:NM_172684:exon2:c.T1241C:p.I414T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr3	104051031	12A2p6	cell line	sgMsh2	104051031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	163	112	30	0.267857143	exonic	Magi3	synonymous SNV	"Magi3:NM_001159354:exon10:c.A1737G:p.L579L,Magi3:NM_133853:exon10:c.A1737G:p.L579L"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999898	CTA	synonymous	NA	NA	NA	NA
M3	chr3	104085353	12A2p6	cell line	sgMsh2	104085353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	113	99	28	0.282828283	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon5:c.T802G:p.C268G,Magi3:NM_133853:exon5:c.T802G:p.C268G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9954651	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	100	77	17	0.220779221	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9995354	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	122	25	5	0.2	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.989662	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr3	107213508	12A2p6	cell line	sgMsh2	107213508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	91	3	0	0	exonic	Cym	synonymous SNV	Cym:NM_001111143:exon7:c.T780C:p.G260G	3qF2.3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9982431	CAC	synonymous	NA	NA	NA	NA
M3	chr3	108377411	12A2p6	cell line	sgMsh2	108377411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	96	0	0	NA	exonic	Mybphl	nonsynonymous SNV	Mybphl:NM_026831:exon7:c.A973G:p.S325G	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994079	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	91	11	2	0.181818182	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	2	1	1	0.9991983	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	115122270	12A2p6	cell line	sgMsh2	115122270	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	71	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.T751A:p.Y251N,Olfm3:NM_153157:exon6:c.T850A:p.Y284N,Olfm3:NM_153458:exon6:c.T790A:p.Y264N"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr3	115122750	12A2p6	cell line	sgMsh2	115122750	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	212	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.C1231T:p.L411F,Olfm3:NM_153157:exon6:c.C1330T:p.L444F,Olfm3:NM_153458:exon6:c.C1270T:p.L424F"	3qF3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.09562694	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr3	116640413	12A2p6	cell line	sgMsh2	116640413	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	235	62	12	0.193548387	exonic	Mfsd14a	nonsynonymous SNV	Mfsd14a:NM_008246:exon8:c.C865A:p.L289I	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	116891951	12A2p6	cell line	sgMsh2	116891951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	129	132	16	0.121212121	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon9:c.T970C:p.Y324H,Frrs1:NM_009146:exon9:c.T970C:p.Y324H"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr3	121761416	12A2p6	cell line	sgMsh2	121761416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	120	268	43	0.160447761	exonic	Abcd3	nonsynonymous SNV	"Abcd3:NM_001355756:exon22:c.A1682G:p.E561G,Abcd3:NM_008991:exon22:c.A1901G:p.E634G"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.62522079	2	0.9933911	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr3	121992888	12A2p6	cell line	sgMsh2	121992888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	115	20	3	0.15	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.A1101G:p.Q367Q,Arhgap29:NM_172525:exon11:c.A1101G:p.Q367Q"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998129	AAC	synonymous	AACA	9	AACAAACAA	NA
M3	chr3	121992907	12A2p6	cell line	sgMsh2	121992907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	106	19	2	0.105263158	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.T1120C:p.L374L,Arhgap29:NM_172525:exon11:c.T1120C:p.L374L"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.999677	GTT	synonymous	NA	NA	NA	NA
M3	chr3	122141699	12A2p6	cell line	sgMsh2	122141699	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	187	0	0	NA	exonic	Abca4	synonymous SNV	Abca4:NM_007378:exon31:c.G4545A:p.Q1515Q	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9964565	AGC	synonymous	NA	NA	NA	NA
M3	chr3	122275474	12A2p6	cell line	sgMsh2	122275474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	148	199	49	0.246231156	exonic	Dnttip2	nonsynonymous SNV	Dnttip2:NM_153806:exon2:c.A337G:p.T113A	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9979148	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	123374841	12A2p6	cell line	sgMsh2	123374841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	143	62	9	0.14516129	exonic	Mettl14	synonymous SNV	Mettl14:NM_201638:exon7:c.A549G:p.T183T	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999657	GTG	synonymous	NA	NA	NA	NA
M3	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	97	15	8	0.533333333	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9940171	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	124413820	12A2p6	cell line	sgMsh2	124413820	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	97	0	0	NA	exonic	1700006A11Rik	frameshift deletion	"1700006A11Rik:NM_001357195:exon6:c.505delT:p.S169Pfs*2,1700006A11Rik:NM_027939:exon7:c.721delT:p.S241Pfs*2"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr3	125438267	12A2p6	cell line	sgMsh2	125438267	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	88	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A484C:p.I162L	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9948006	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	126834575	12A2p6	cell line	sgMsh2	126834575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	197	296	80	0.27027027	exonic	Camk2d	synonymous SNV	"Camk2d:NM_001025438:exon15:c.A1035G:p.A345A,Camk2d:NM_023813:exon15:c.A1035G:p.A345A,Camk2d:NM_001293664:exon16:c.A1077G:p.A359A,Camk2d:NM_001293665:exon16:c.A639G:p.A213A,Camk2d:NM_001025439:exon17:c.A1137G:p.A379A,Camk2d:NM_001293663:exon17:c.A1137G:p.A379A,Camk2d:NM_001346635:exon17:c.A1137G:p.A379A,Camk2d:NM_001346636:exon17:c.A1137G:p.A379A"	3qG1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999987	CAC	synonymous	NA	NA	NA	NA
M3	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Strelka2;Vardict	2	0.2027	74	62	2	0.032258065	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.868029138	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M3	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	121	97	18	0.18556701	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.7911924	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr3	132178080	12A2p6	cell line	sgMsh2	132178080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	156	13	2	0.153846154	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon4:c.A740G:p.Y247C	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999844	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	132715641	12A2p6	cell line	sgMsh2	132715641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	107	20	6	0.3	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon6:c.A508G:p.T170A	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9968508	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	132885813	12A2p6	cell line	sgMsh2	132885813	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	56	203	42	0.206896552	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1545A:p.N515K,Npnt:NM_001287103:exon11:c.T1233A:p.N411K,Npnt:NM_001287102:exon12:c.T1638A:p.N546K,Npnt:NM_033525:exon12:c.T1596A:p.N532K,Npnt:NM_001287101:exon13:c.T1689A:p.N563K"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9892499	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	103	118	31	0.262711864	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9638498	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr3	137865619	12A2p6	cell line	sgMsh2	137865619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	95	7	2	0.285714286	exonic	H2az1	nonsynonymous SNV	"H2az1:NM_001316995:exon3:c.T181C:p.Y61H,H2az1:NM_016750:exon3:c.T181C:p.Y61H"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9969682	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr3	138148506	12A2p6	cell line	sgMsh2	138148506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	83	26	2	0.076923077	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon3:c.T344C:p.V115A,Trmt10a:NM_175389:exon3:c.T344C:p.V115A,Trmt10a:NM_001348197:exon4:c.T344C:p.V115A"	3qG3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9982841	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr3	139015582	12A2p6	cell line	sgMsh2	139015582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	160	108	32	0.296296296	exonic	Rap1gds1	nonsynonymous SNV	"Rap1gds1:NM_001040690:exon4:c.A325G:p.T109A,Rap1gds1:NM_001286759:exon4:c.A325G:p.T109A,Rap1gds1:NM_001356388:exon4:c.A325G:p.T109A,Rap1gds1:NM_145544:exon4:c.A325G:p.T109A"	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.72799681	2	0.8954692	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr3	139298464	12A2p6	cell line	sgMsh2	139298464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	166	0	0	NA	exonic	Stpg2	nonsynonymous SNV	Stpg2:NM_198659:exon7:c.G801A:p.M267I	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999915	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr3	139419798	12A2p6	cell line	sgMsh2	139419798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	72	0	0	NA	exonic	Stpg2	frameshift deletion	Stpg2:NM_198659:exon11:c.1351delA:p.R453Gfs*5	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr3	142312189	12A2p6	cell line	sgMsh2	142312189	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	125	120	36	0.3	exonic	Pdlim5	nonsynonymous SNV	"Pdlim5:NM_001190857:exon4:c.A317C:p.E106A,Pdlim5:NM_022554:exon4:c.A317C:p.E106A,Pdlim5:NM_001190852:exon5:c.A317C:p.E106A,Pdlim5:NM_001190854:exon5:c.A317C:p.E106A,Pdlim5:NM_001190855:exon5:c.A317C:p.E106A,Pdlim5:NM_001190856:exon5:c.A317C:p.E106A,Pdlim5:NM_019808:exon5:c.A644C:p.E215A,Pdlim5:NM_019809:exon5:c.A644C:p.E215A"	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9998888	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr3	142618173	12A2p6	cell line	sgMsh2	142618173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	122	2	0	0	exonic	Gbp2b	nonsynonymous SNV	Gbp2b:NM_010259:exon11:c.A1738G:p.M580V	3qH1	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8945197	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr3	145016846	12A2p6	cell line	sgMsh2	145016846	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	67	10	0	0	exonic	Clca1	frameshift deletion	Clca1:NM_017474:exon6:c.764delA:p.N255Ifs*34	3qH2	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr3	148890507	12A2p6	cell line	sgMsh2	148890507	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	153	24	2	0.083333333	exonic	Adgrl2	synonymous SNV	Adgrl2:NM_001081298:exon2:c.C192T:p.Y64Y	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999813	CGT	synonymous	NA	NA	NA	NA
M3	chr3	153509458	12A2p6	cell line	sgMsh2	153509458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	89	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon2:c.A58G:p.I20V	3qH3	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9950105	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr3	154727461	12A2p6	cell line	sgMsh2	154727461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	155	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon4:c.G480A:p.G160G	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	GGA	synonymous	NA	NA	NA	NA
M3	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	61	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9829592	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr3	155055306	12A2p6	cell line	sgMsh2	155055306	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	138	0	0	NA	exonic	Tnni3k	frameshift deletion	Tnni3k:NM_177066:exon1:c.1delA:p.M1Wfs*26	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.993501529	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3	chr3	158318471	12A2p6	cell line	sgMsh2	158318471	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	134	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon4:c.C385A:p.L129I,Lrrc7:NM_001370782:exon4:c.C385A:p.L129I,Lrrc7:NM_001081358:exon5:c.C286A:p.L96I,Lrrc7:NM_001291452:exon5:c.C286A:p.L96I,Lrrc7:NM_001291453:exon5:c.C286A:p.L96I"	3qH4	chr3-10012637-159913826	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9998426	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr4	6272402	12A2p6	cell line	sgMsh2	6272402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	94	0	0	NA	exonic	Cyp7a1	synonymous SNV	Cyp7a1:NM_007824:exon3:c.T810C:p.F270F	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9993316	CAA	synonymous	NA	NA	NA	NA
M3	chr4	8752517	12A2p6	cell line	sgMsh2	8752517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	96	15	2	0.133333333	exonic	Chd7	nonsynonymous SNV	Chd7:NM_001277149:exon2:c.T1013C:p.V338A	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994079	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr4	14524524	12A2p6	cell line	sgMsh2	14524524	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	99	0	0	NA	exonic	Slc26a7	synonymous SNV	Slc26a7:NM_145947:exon12:c.C1359A:p.A453A	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995063	TGG	synonymous	NA	NA	NA	NA
M3	chr4	14548485	12A2p6	cell line	sgMsh2	14548485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	119	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon7:c.C803T:p.A268V	4qA1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998532	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	82	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986171	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	70	100	33	0.33	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9971411	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	92	12	2	0.166666667	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9992455	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	56	41	12	0.292682927	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.933548851	1	0.9792552	ATG	synonymous	NA	NA	NA	NA
M3	chr4	32017058	12A2p6	cell line	sgMsh2	32017058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	59	84	25	0.297619048	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_172688:exon15:c.T1465C:p.S489P,Map3k7:NM_009316:exon16:c.T1546C:p.S516P"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9944444	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	32725960	12A2p6	cell line	sgMsh2	32725960	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	110	17	0	0	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon51:c.7878delA:p.N2627Tfs*25	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	95	13	5	0.384615385	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9993709	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr4	33246353	12A2p6	cell line	sgMsh2	33246353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	55	348	105	0.301724138	exonic	Pnrc1	nonsynonymous SNV	Pnrc1:NM_001033225:exon2:c.A605C:p.E202A	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9929299	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	34565153	12A2p6	cell line	sgMsh2	34565153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	126	176	55	0.3125	exonic	Akirin2	synonymous SNV	Akirin2:NM_001007589:exon3:c.A399G:p.P133P	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	1	0.999904	CAT	synonymous	A	5	AAAAA	NA
M3	chr4	34572529	12A2p6	cell line	sgMsh2	34572529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	78	49	17	0.346938776	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon18:c.T1895C:p.I632T,Orc3:NM_015824:exon18:c.T1898C:p.I633T"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9982381	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	105	50	20	0.4	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996569	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr4	34816365	12A2p6	cell line	sgMsh2	34816365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	74	46	13	0.282608696	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon7:c.T923C:p.V308A	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9977555	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	39451103	12A2p6	cell line	sgMsh2	39451103	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A308C:p.N103T	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9978873	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	43022109	12A2p6	cell line	sgMsh2	43022109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	43	18	7	0.388888889	exonic	Pigo	nonsynonymous SNV	"Pigo:NM_020035:exon5:c.A1049G:p.E350G,Pigo:NM_001305386:exon6:c.A1025G:p.E342G,Pigo:NM_001305387:exon6:c.A1025G:p.E342G"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9854722	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	43449514	12A2p6	cell line	sgMsh2	43449514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	92	0	0	NA	exonic	Cd72	synonymous SNV	"Cd72:NM_001110322:exon5:c.C690T:p.S230S,Cd72:NM_001110321:exon6:c.C801T:p.S267S,Cd72:NM_001110320:exon7:c.C873T:p.S291S,Cd72:NM_007654:exon7:c.C852T:p.S284S"	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9992455	CGC	synonymous	NA	NA	NA	NA
M3	chr4	43507096	12A2p6	cell line	sgMsh2	43507096	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.438	15	0	0	NA	exonic	Car9	frameshift deletion	Car9:NM_139305:exon1:c.41delC:p.P15Qfs*78	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3	chr4	43548119	12A2p6	cell line	sgMsh2	43548119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	20	75	19	0.253333333	exonic	Tln1	nonsynonymous SNV	Tln1:NM_011602:exon18:c.G2023A:p.V675M	4qA5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9438084	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr4	45043611	12A2p6	cell line	sgMsh2	45043611	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.445	27	0	0	NA	exonic	Fbxo10	frameshift deletion	"Fbxo10:NM_001378820:exon8:c.1650delC:p.T551Hfs*24,Fbxo10:NM_001378821:exon8:c.2211delC:p.T738Hfs*24"	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3	chr4	45399900	12A2p6	cell line	sgMsh2	45399900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.178	122	51	0	0	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.T238C:p.L80L	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.762255484	1	0.5092877	AAG	synonymous	NA	NA	NA	NA
M3	chr4	46007511	12A2p6	cell line	sgMsh2	46007511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	102	24	7	0.291666667	exonic	Tdrd7	nonsynonymous SNV	"Tdrd7:NM_001290475:exon8:c.A1562C:p.E521A,Tdrd7:NM_001355189:exon8:c.A1463C:p.E488A,Tdrd7:NM_146142:exon8:c.A1463C:p.E488A"	4qB1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	1	0.9995884	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	53040735	12A2p6	cell line	sgMsh2	53040735	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	92	38	5	0.131578947	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon44:c.T5911G:p.F1971V	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9992455	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	53543568	12A2p6	cell line	sgMsh2	53543568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	70	108	36	0.333333333	exonic	Slc44a1	nonsynonymous SNV	"Slc44a1:NM_001159633:exon10:c.T1111G:p.F371V,Slc44a1:NM_001374697:exon10:c.T1111G:p.F371V,Slc44a1:NM_133891:exon10:c.T1111G:p.F371V"	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9971411	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	105	28	11	0.392857143	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996569	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr4	58486775	12A2p6	cell line	sgMsh2	58486775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	59	2	2	1	exonic	Lpar1	synonymous SNV	"Lpar1:NM_001290486:exon2:c.G441T:p.V147V,Lpar1:NM_010336:exon3:c.G495T:p.V165V,Lpar1:NM_172989:exon3:c.G495T:p.V165V"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9944444	CCA	synonymous	CAC	12	CACCACCACCAC	NA
M3	chr4	58824277	12A2p6	cell line	sgMsh2	58824277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	75	87	29	0.333333333	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon30:c.T3357C:p.P1119P,Ecpas:NM_172381:exon30:c.T3339C:p.P1113P,Ecpas:NM_001355697:exon31:c.T3339C:p.P1113P"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9978873	AAG	synonymous	NA	NA	NA	NA
M3	chr4	58872682	12A2p6	cell line	sgMsh2	58872682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	62	53	14	0.264150943	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon6:c.T636C:p.G212G,Ecpas:NM_172381:exon6:c.T618C:p.G206G,Ecpas:NM_001355697:exon7:c.T618C:p.G206G"	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	AAC	synonymous	NA	NA	NA	NA
M3	chr4	59022628	12A2p6	cell line	sgMsh2	59022628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	78	46	12	0.260869565	exonic	Dnajc25	nonsynonymous SNV	Dnajc25:NM_001033165:exon4:c.A1019G:p.Y340C	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9982381	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	59048124	12A2p6	cell line	sgMsh2	59048124	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	105	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon27:c.A3494C:p.K1165T	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996569	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr4	59524445	12A2p6	cell line	sgMsh2	59524445	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	53	77	29	0.376623377	exonic	Ptbp3	nonsynonymous SNV	Ptbp3:NM_144904:exon3:c.T74A:p.V25D	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	63309609	12A2p6	cell line	sgMsh2	63309609	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	30	17	5	0.294117647	exonic	Col27a1	nonsynonymous SNV	Col27a1:NM_025685:exon37:c.C3652T:p.P1218S	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9685855	CCC	nonsynonymous	C	5	CCCCC	NA
M3	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	88	2	1	0.5	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9990385	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr4	63851155	12A2p6	cell line	sgMsh2	63851155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	67	0	0	NA	exonic	Tnfsf8	nonsynonymous SNV	Tnfsf8:NM_009403:exon2:c.C218T:p.T73I	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9965726	AGT	nonsynonymous	TGGAG	11	TGGAGTGGAGT	NA
M3	chr4	65204930	12A2p6	cell line	sgMsh2	65204930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	103	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon7:c.T2501C:p.I834T	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9996126	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr4	68826849	12A2p6	cell line	sgMsh2	68826849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	70	0	0	NA	exonic	Brinp1	synonymous SNV	Brinp1:NM_019967:exon5:c.C652T:p.L218L	4qC1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9971411	AGA	synonymous	NA	NA	NA	NA
M3	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	61	25	6	0.24	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9950758	CTA	synonymous	NA	NA	NA	NA
M3	chr4	70317460	12A2p6	cell line	sgMsh2	70317460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	82	36	10	0.277777778	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon10:c.A624G:p.T208T,Cdk5rap2:NM_145990:exon13:c.A1443G:p.T481T"	4qC2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986171	CTG	synonymous	ACTGCC	12	ACTGCCACTGCC	NA
M3	chr4	72852198	12A2p6	cell line	sgMsh2	72852198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	132	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.T372A:p.R124R	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999332	CAC	synonymous	NA	NA	NA	NA
M3	chr4	74170660	12A2p6	cell line	sgMsh2	74170660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	53	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon13:c.A1093G:p.S365G,Frmd3:NM_172869:exon13:c.A1093G:p.S365G"	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	75956378	12A2p6	cell line	sgMsh2	75956378	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	66	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon24:c.G3815T:p.R1272M,Ptprd:NM_001352629:exon25:c.G3827T:p.R1276M,Ptprd:NM_001352630:exon25:c.G3824T:p.R1275M,Ptprd:NM_001368993:exon25:c.G3854T:p.R1285M,Ptprd:NM_001352628:exon26:c.G3866T:p.R1289M,Ptprd:NM_001368991:exon35:c.G3839T:p.R1280M,Ptprd:NM_011211:exon35:c.G3842T:p.R1281M"	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9963591	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr4	83263748	12A2p6	cell line	sgMsh2	83263748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	99	32	8	0.25	exonic	Ttc39b	nonsynonymous SNV	Ttc39b:NM_027238:exon4:c.T233C:p.L78P	4qC3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995063	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	84973993	12A2p6	cell line	sgMsh2	84973993	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	29	8	0	0	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon7:c.G1114A:p.V372I	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.966686	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr4	86087731	12A2p6	cell line	sgMsh2	86087731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	77	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon2:c.A86G:p.E29G,Adamtsl1:NM_029967:exon2:c.A86G:p.E29G"	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9981282	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	86585367	12A2p6	cell line	sgMsh2	86585367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	46	46	19	0.413043478	exonic	Haus6	nonsynonymous SNV	Haus6:NM_173400:exon15:c.T1720A:p.L574I	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9878595	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	88408934	12A2p6	cell line	sgMsh2	88408934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	145	15	3	0.2	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon43:c.T5261C:p.L1754P	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999697	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr4	88820339	12A2p6	cell line	sgMsh2	88820339	G	-	Deletion	Strelka2;Vardict	2	0.4944	178	0	0	NA	exonic	Ifna11	frameshift deletion	Ifna11:NM_008333:exon1:c.381delG:p.V129Cfs*5	4qC4	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr4	91399449	12A2p6	cell line	sgMsh2	91399449	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	80	0	0	NA	exonic	Elavl2	nonsynonymous SNV	Elavl2:NM_207685:exon2:c.G16A:p.E6K	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9984391	TCA	nonsynonymous	NA	NA	NA	NA
M3	chr4	95812157	12A2p6	cell line	sgMsh2	95812157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	102	10	2	0.2	exonic	Fggy	nonsynonymous SNV	"Fggy:NM_001113412:exon10:c.A1064G:p.K355R,Fggy:NM_029347:exon10:c.A1064G:p.K355R"	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995884	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	96503958	12A2p6	cell line	sgMsh2	96503958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	102	0	0	NA	exonic	Cyp2j8	synonymous SNV	Cyp2j8:NM_001104927:exon2:c.T258C:p.G86G	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995884	TAC	synonymous	NA	NA	NA	NA
M3	chr4	96545806	12A2p6	cell line	sgMsh2	96545806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	115	46	15	0.326086957	exonic	Cyp2j6	nonsynonymous SNV	Cyp2j6:NM_010008:exon2:c.T266C:p.V89A	4qC5	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998129	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	98020925	12A2p6	cell line	sgMsh2	98020925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	55	49	18	0.367346939	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon6:c.A986G:p.Q329R,Nfia:NM_001122953:exon6:c.A917G:p.Q306R,Nfia:NM_010905:exon6:c.A917G:p.Q306R"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9929299	CAG	nonsynonymous	CCAGT	10	CCAGTCCAGT	NA
M3	chr4	98944672	12A2p6	cell line	sgMsh2	98944672	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	128	79	38	0.481012658	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_026082:exon45:c.C5947T:p.L1983F,Dock7:NM_001290636:exon46:c.C6037T:p.L2013F,Dock7:NM_001369285:exon46:c.C5953T:p.L1985F,Dock7:NM_001369286:exon47:c.C6043T:p.L2015F"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999149	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	72	38	10	0.263157895	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9974668	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M3	chr4	102595966	12A2p6	cell line	sgMsh2	102595966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	83	1	1	1	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon3:c.A358G:p.T120A,Pde4b:NM_001177981:exon3:c.A175G:p.T59A,Pde4b:NM_001177982:exon3:c.A118G:p.T40A,Pde4b:NM_001374780:exon8:c.A643G:p.T215A,Pde4b:NM_019840:exon8:c.A829G:p.T277A"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986984	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	103072833	12A2p6	cell line	sgMsh2	103072833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	57	4	2	0.5	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon8:c.T960C:p.S320S	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.702302805	2	0.545272	TAC	synonymous	NA	NA	NA	NA
M3	chr4	103143160	12A2p6	cell line	sgMsh2	103143160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	67	63	17	0.26984127	exonic	Mier1	nonsynonymous SNV	"Mier1:NM_001039081:exon7:c.A564C:p.Q188H,Mier1:NM_001286223:exon7:c.A561C:p.Q187H,Mier1:NM_001286221:exon9:c.A699C:p.Q233H,Mier1:NM_001286222:exon9:c.A615C:p.Q205H,Mier1:NM_027696:exon9:c.A615C:p.Q205H"	4qC6	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9965726	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	107060585	12A2p6	cell line	sgMsh2	107060585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	53	94	41	0.436170213	exonic	Mrpl37	nonsynonymous SNV	Mrpl37:NM_025500:exon5:c.G888T:p.K296N	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	1	0.9920255	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr4	108008226	12A2p6	cell line	sgMsh2	108008226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon7:c.T880C:p.F294L	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9981282	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr4	108021456	12A2p6	cell line	sgMsh2	108021456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	81	0	0	NA	exonic	Podn	nonsynonymous SNV	"Podn:NM_001285956:exon10:c.T1213C:p.Y405H,Podn:NM_001285958:exon10:c.T1213C:p.Y405H,Podn:NM_172874:exon10:c.T1213C:p.Y405H"	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9985308	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	108826109	12A2p6	cell line	sgMsh2	108826109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	201	22	9	0.409090909	exonic	Btf3l4	synonymous SNV	"Btf3l4:NM_001356361:exon3:c.T159C:p.G53G,Btf3l4:NM_027453:exon3:c.T159C:p.G53G"	4qC7	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.999999	TAC	synonymous	NA	NA	NA	NA
M3	chr4	112298156	12A2p6	cell line	sgMsh2	112298156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	98	0	0	NA	exonic	Skint3	nonsynonymous SNV	"Skint3:NM_177578:exon8:c.A1110G:p.I370M,Skint3:NM_001348354:exon9:c.A978G:p.I326M,Skint3:NM_001102474:exon10:c.A1326G:p.I442M"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994755	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	108	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9997139	GCT	synonymous	NA	NA	NA	NA
M3	chr4	112728889	12A2p6	cell line	sgMsh2	112728889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	55	0	0	NA	exonic	Skint10	stopgain	Skint10:NM_177668:exon4:c.G529T:p.G177X	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9929299	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr4	113004506	12A2p6	cell line	sgMsh2	113004506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	158	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon23:c.T1853C:p.M618T	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999862	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	113483888	12A2p6	cell line	sgMsh2	113483888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	86	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon56:c.T4150C:p.Y1384H,Skint5:NM_001167876:exon57:c.T4213C:p.Y1405H"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9989147	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	113571596	12A2p6	cell line	sgMsh2	113571596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon43:c.T3180C:p.S1060S,Skint5:NM_001167878:exon43:c.T3180C:p.S1060S"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998129	CAC	synonymous	NA	NA	NA	NA
M3	chr4	115014223	12A2p6	cell line	sgMsh2	115014223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	82	17	4	0.235294118	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon8:c.A311G:p.N104S,Stil:NM_001304555:exon9:c.A989G:p.N330S,Stil:NM_001304559:exon9:c.A989G:p.N330S,Stil:NM_009185:exon9:c.A989G:p.N330S"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986171	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2951	61	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
M3	chr4	115496100	12A2p6	cell line	sgMsh2	115496100	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.472	30	0	0	NA	exonic	Cyp4a14	frameshift deletion	Cyp4a14:NM_007822:exon1:c.14delT:p.L5Yfs*59	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	NA	NA	TAA	frameshift	TAAA	8	TAAATAAA	-1
M3	chr4	115866539	12A2p6	cell line	sgMsh2	115866539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	76	31	12	0.387096774	exonic	Mknk1	nonsynonymous SNV	"Mknk1:NM_001355174:exon7:c.A430G:p.T144A,Mknk1:NM_001369238:exon7:c.A430G:p.T144A,Mknk1:NM_021461:exon7:c.A430G:p.T144A,Mknk1:NM_001285488:exon8:c.A430G:p.T144A,Mknk1:NM_001285487:exon9:c.A448G:p.T150A"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9980114	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	116327723	12A2p6	cell line	sgMsh2	116327723	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	75	109	35	0.321100917	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon8:c.T791G:p.F264C,Mast2:NM_008641:exon8:c.T791G:p.F264C,Mast2:NM_001042743:exon9:c.T812G:p.F271C,Mast2:NM_001369061:exon9:c.T812G:p.F271C"	4qD1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9978873	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr4	118211472	12A2p6	cell line	sgMsh2	118211472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	28	152	37	0.243421053	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon29:c.T5098C:p.Y1700H	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.792231823	1	0.8184403	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	118385860	12A2p6	cell line	sgMsh2	118385860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	40	9	4	0.444444444	exonic	Szt2	nonsynonymous SNV	Szt2:NM_198170:exon29:c.A4300G:p.I1434V	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9826236	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr4	118734571	12A2p6	cell line	sgMsh2	118734571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	exonic	Olfr1339	nonsynonymous SNV	Olfr1339:NM_146852:exon1:c.A41G:p.E14G	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9987749	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	101	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9995627	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	120096995	12A2p6	cell line	sgMsh2	120096995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	23	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A2507G:p.Q836R	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9527374	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	120098500	12A2p6	cell line	sgMsh2	120098500	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	98	2	0	0	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A4012C:p.T1338P	4qD2.1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994755	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	120535763	12A2p6	cell line	sgMsh2	120535763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	43	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon4:c.C1051T:p.R351C	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9854722	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	123	119	38	0.319327731	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998848	CAG	synonymous	GT	8	GTGTGTGT	NA
M3	chr4	123471072	12A2p6	cell line	sgMsh2	123471072	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	57	2	1	0.5	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.T9895C:p.F3299L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9937324	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	123475869	12A2p6	cell line	sgMsh2	123475870	AT	TC	DBS	Mutect2;Vardict	2	0.292	144	3	2	0.666666667	exonic	Macf1	nonframeshift substitution	Macf1:NM_001199136:exon36:c.5097_5098GA:p.S1700T	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	115	150	38	0.253333333	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998129	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	54	131	42	0.320610687	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.792231823	1	0.8044024	TAG	synonymous	NA	NA	NA	NA
M3	chr4	126832123	12A2p6	cell line	sgMsh2	126832123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	75	70	18	0.257142857	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon9:c.A1325G:p.H442R,AU040320:NM_001035526:exon9:c.A1325G:p.H442R,AU040320:NM_133886:exon9:c.A1325G:p.H442R,AU040320:NM_001355196:exon11:c.A1262G:p.H421R"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9978873	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	127048748	12A2p6	cell line	sgMsh2	127048748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	12	7	0.583333333	exonic	Zmym1	nonsynonymous SNV	"Zmym1:NM_026670:exon8:c.T1846C:p.F616L,Zmym1:NM_001356311:exon9:c.T1630C:p.F544L"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998916	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	83	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9986984	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	128475742	12A2p6	cell line	sgMsh2	128475742	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	70	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon36:c.A5666C:p.E1889A	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9971411	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	128534263	12A2p6	cell line	sgMsh2	128534263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	68	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon56:c.C8806T:p.R2936C	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9967736	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	12	1	0	0	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9113752	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	40	1	1	1	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9826236	CAT	synonymous	NA	NA	NA	NA
M3	chr4	129076254	12A2p6	cell line	sgMsh2	129076254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	62	18	9	0.5	exonic	Rnf19b	synonymous SNV	"Rnf19b:NM_001368763:exon5:c.A1233G:p.P411P,Rnf19b:NM_029219:exon5:c.A1230G:p.P410P"	4qD2.2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	CAG	synonymous	NA	NA	NA	NA
M3	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	21	9	4	0.444444444	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9469504	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	133693973	12A2p6	cell line	sgMsh2	133693973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	62	86	30	0.348837209	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon8:c.T2520G:p.G840G,Arid1a:NM_001363070:exon8:c.T1365G:p.G455G"	4qD2.3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	GAC	synonymous	NA	NA	NA	NA
M3	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	96	25	5	0.2	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994079	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr4	134362714	12A2p6	cell line	sgMsh2	134362714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	73	2	0	0	exonic	Extl1	nonsynonymous SNV	"Extl1:NM_001355493:exon5:c.T275C:p.I92T,Extl1:NM_019578:exon5:c.T1082C:p.I361T"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9976155	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	137543941	12A2p6	cell line	sgMsh2	137543941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	40	63	19	0.301587302	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon57:c.A7388G:p.H2463R	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9826236	CAC	nonsynonymous	C	5	CCCCC	NA
M3	chr4	137548079	12A2p6	cell line	sgMsh2	137548079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	53	39	11	0.282051282	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon63:c.A8217G:p.G2739G	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9920255	GAC	synonymous	NA	NA	NA	NA
M3	chr4	138289303	12A2p6	cell line	sgMsh2	138289303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	81	0	0	NA	exonic	Kif17	synonymous SNV	"Kif17:NM_001190978:exon7:c.T1296C:p.A432A,Kif17:NM_010623:exon9:c.T2007C:p.A669A"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9985308	CTG	synonymous	TGTGGC	14	TGTGGCTGTGGCTG	NA
M3	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.39	40	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3	chr4	140748198	12A2p6	cell line	sgMsh2	140748198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	69	1	1	1	exonic	Padi4	nonsynonymous SNV	Padi4:NM_011061:exon15:c.T1655C:p.L552P	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9969629	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	140932083	12A2p6	cell line	sgMsh2	140932083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	44	11	4	0.363636364	exonic	Padi2	nonsynonymous SNV	Padi2:NM_008812:exon7:c.G698A:p.R233H	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9863153	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr4	141046782	12A2p6	cell line	sgMsh2	141046782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	25	6	0	0	exonic	Crocc	nonsynonymous SNV	Crocc:NM_172122:exon5:c.A617G:p.Q206R	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9579167	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
M3	chr4	141395708	12A2p6	cell line	sgMsh2	141395708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	46	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon4:c.T386C:p.M129T,Clcnka:NM_024412:exon5:c.T386C:p.M129T"	4qD3	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9878595	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	141642733	12A2p6	cell line	sgMsh2	141642733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	42	5	1	0.2	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon2:c.T84C:p.C28C,Plekhm2:NM_001347237:exon2:c.T84C:p.C28C"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9845778	CAC	synonymous	NA	NA	NA	NA
M3	chr4	143132648	12A2p6	cell line	sgMsh2	143132648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	127	38	7	0.184210526	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.T4071C:p.P1357P,Prdm2:NM_001256380:exon8:c.T4071C:p.P1357P"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999096	TAG	synonymous	NA	NA	NA	NA
M3	chr4	144196589	12A2p6	cell line	sgMsh2	144196589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	62	0	0	NA	exonic	Oog2	nonsynonymous SNV	Oog2:NM_198661:exon5:c.T1423C:p.W475R	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9953642	CTG	nonsynonymous	CCCT	8	CCCTCCCT	NA
M3	chr4	144373277	12A2p6	cell line	sgMsh2	144373277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	92	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T917C:p.V306A	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9992455	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	144555004	12A2p6	cell line	sgMsh2	144555004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	97	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.T1217C:p.I406T	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9994427	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	144564983	12A2p6	cell line	sgMsh2	144564983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	135	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T152C:p.L51P	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999443	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	144565004	12A2p6	cell line	sgMsh2	144565004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	132	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T131C:p.M44T	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9999332	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	145045079	12A2p6	cell line	sgMsh2	145045079	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	76	55	18	0.327272727	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon64:c.G12221A:p.G4074D,Vps13d:NM_001276465:exon65:c.G12218A:p.G4073D"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9980114	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr4	145062653	12A2p6	cell line	sgMsh2	145062653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	107	19	5	0.263157895	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon59:c.T11492C:p.V3831A,Vps13d:NM_001276465:exon60:c.T11489C:p.V3830A"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.999696	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	145154816	12A2p6	cell line	sgMsh2	145154816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	88	36	9	0.25	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.C4206A:p.H1402Q,Vps13d:NM_001276465:exon19:c.C4206A:p.H1402Q"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9990385	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr4	145156045	12A2p6	cell line	sgMsh2	145156045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	93	15	3	0.2	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.T2977C:p.Y993H,Vps13d:NM_001276465:exon19:c.T2977C:p.Y993H"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9992898	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	145170242	12A2p6	cell line	sgMsh2	145170242	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	125	41	14	0.341463415	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon9:c.T1107G:p.D369E,Vps13d:NM_001276465:exon10:c.T1107G:p.D369E"	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9998979	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr4	145274344	12A2p6	cell line	sgMsh2	145274344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	12	0	0	NA	exonic	Tnfrsf8	synonymous SNV	Tnfrsf8:NM_009401:exon12:c.T1191C:p.P397P	4qE1	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9113752	AAG	synonymous	A	5	AAAAA	NA
M3	chr4	148052574	12A2p6	cell line	sgMsh2	148052574	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	41	24	7	0.291666667	exonic	Mthfr	stopgain	"Mthfr:NM_001161798:exon9:c.G1528T:p.E510X,Mthfr:NM_010840:exon9:c.G1405T:p.E469X"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9836294	AGA	nonsynonymous	GAAG	8	GAAGGAAG	NA
M3	chr4	148087939	12A2p6	cell line	sgMsh2	148087939	T	A	SNV	Mutect2;MuSe	2	0.304	9	31	8	0.258064516	exonic	Agtrap	nonsynonymous SNV	Agtrap:NM_009642:exon1:c.A5T:p.E2V	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.8949507	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	148562393	12A2p6	cell line	sgMsh2	148562393	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.213	48	78	8	0.102564103	exonic	Exosc10	synonymous SNV	"Exosc10:NM_001355489:exon4:c.A210G:p.V70V,Exosc10:NM_001355490:exon4:c.A459G:p.V153V,Exosc10:NM_016699:exon4:c.A459G:p.V153V"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	0.91213718	1	0.9614274	TAT	synonymous	NA	NA	NA	NA
M3	chr4	149469049	12A2p6	cell line	sgMsh2	149469049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	76	28	12	0.428571429	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A605G:p.D202G,Nmnat1:NM_133435:exon5:c.A605G:p.D202G"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9980114	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr4	149469055	12A2p6	cell line	sgMsh2	149469055	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	76	25	10	0.4	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A599T:p.E200V,Nmnat1:NM_133435:exon5:c.A599T:p.E200V"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9980114	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr4	151017913	12A2p6	cell line	sgMsh2	151017913	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	42	5	2	0.4	exonic	Per3	nonsynonymous SNV	"Per3:NM_001289877:exon15:c.C1892T:p.P631L,Per3:NM_011067:exon15:c.C1892T:p.P631L,Per3:NM_001289878:exon16:c.C950T:p.P317L"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9845778	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr4	152435809	12A2p6	cell line	sgMsh2	152435809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	26	0	0	NA	exonic	Kcnab2	nonsynonymous SNV	"Kcnab2:NM_001252654:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252655:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252656:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355172:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355173:exon2:c.T73C:p.Y25H,Kcnab2:NM_010598:exon2:c.T73C:p.Y25H"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9602973	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	153386480	12A2p6	cell line	sgMsh2	153386480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	111	0	0	NA	exonic	Ajap1	nonsynonymous SNV	Ajap1:NM_001099299:exon3:c.T869C:p.V290A	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	1	1	1	0.9997615	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	40	2	0	0	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	3	2	1	0.96	4.111040811	NA	2	1	1	0.9826236	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr4	156224815	12A2p6	cell line	sgMsh2	156224815	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.336	81	16	4	0.25	exonic	Plekhn1	frameshift deletion	"Plekhn1:NM_001008233:exon7:c.633delC:p.W212Gfs*12,Plekhn1:NM_001368639:exon7:c.633delC:p.W212Gfs*12"	4qE2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr5	3565724	12A2p6	cell line	sgMsh2	3565724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	176	73	10	0.136986301	exonic	Fam133b	nonsynonymous SNV	Fam133b:NM_001042501:exon10:c.A625G:p.S209G	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.766537818	2	0.6048293	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	3571771	12A2p6	cell line	sgMsh2	3571771	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	92	0	0	NA	exonic	1700109H08Rik	frameshift deletion	1700109H08Rik:NM_029843:exon1:c.19delA:p.M9Wfs*54	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr5	4060413	12A2p6	cell line	sgMsh2	4060413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	80	60	12	0.2	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon37:c.A9115G:p.S3039G	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9984391	AAG	nonsynonymous	A	5	AAAAA	NA
M3	chr5	6769089	12A2p6	cell line	sgMsh2	6769089	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	149	0	0	NA	exonic	Zfp804b	stopgain	Zfp804b:NM_001163223:exon4:c.C3973T:p.Q1325X	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9825501	TGG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3	chr5	6770614	12A2p6	cell line	sgMsh2	6770614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	141	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A2448G:p.K816K	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9885818	GTT	synonymous	G	5	GGGGG	NA
M3	chr5	7305026	12A2p6	cell line	sgMsh2	7305026	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	202	0	0	NA	exonic	Tex47	frameshift deletion	Tex47:NM_027603:exon2:c.206delA:p.Y69Lfs*7	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	-1
M3	chr5	7305531	12A2p6	cell line	sgMsh2	7305531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	124	0	0	NA	exonic	Tex47	nonsynonymous SNV	Tex47:NM_027603:exon2:c.A711G:p.I237M	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.852184501	1	0.9695368	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	9445497	12A2p6	cell line	sgMsh2	9445497	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.256	155	0	0	NA	exonic	Elapor2	nonsynonymous SNV	"Elapor2:NM_001359885:exon15:c.A1961G:p.K654R,Elapor2:NM_001359886:exon15:c.A1961G:p.K654R,Elapor2:NM_001359884:exon16:c.A2300G:p.K767R,Elapor2:NM_172706:exon16:c.A2300G:p.K767R"	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	9512195	12A2p6	cell line	sgMsh2	9512195	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	174	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.G1654A:p.G552S	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999948	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr5	14712864	12A2p6	cell line	sgMsh2	14712864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	155	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.C11350T:p.P3784S,Pclo:NM_011995:exon7:c.C11350T:p.P3784S"	5qA1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr5	20611186	12A2p6	cell line	sgMsh2	20611186	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	4	2	0.5	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon18:c.A3010C:p.R1004R,Magi2:NM_015823:exon19:c.A3052C:p.R1018R,Magi2:NM_001170746:exon20:c.A3541C:p.R1181R"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9864224	GAG	synonymous	NA	NA	NA	NA
M3	chr5	20896303	12A2p6	cell line	sgMsh2	20896303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	171	56	12	0.214285714	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2238C:p.P746P	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.9628856	CAG	synonymous	NA	NA	NA	NA
M3	chr5	20998619	12A2p6	cell line	sgMsh2	20998619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	149	188	39	0.207446809	exonic	Ptpn12	nonsynonymous SNV	"Ptpn12:NM_001356591:exon12:c.A803G:p.H268R,Ptpn12:NM_001356592:exon13:c.A803G:p.H268R,Ptpn12:NM_011203:exon13:c.A1160G:p.H387R,Ptpn12:NM_001356590:exon14:c.A1202G:p.H401R"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999762	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	21288609	12A2p6	cell line	sgMsh2	21288609	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	74	16	5	0.3125	exonic	Gsap	nonsynonymous SNV	"Gsap:NM_001359876:exon27:c.A2150C:p.N717T,Gsap:NM_175437:exon28:c.A2243C:p.N748T"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	AAT	nonsynonymous	A	5	AAAAA	NA
M3	chr5	21316965	12A2p6	cell line	sgMsh2	21316965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	68	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon9:c.T1060C:p.L354L	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.698020471	2	0.6496673	AAG	synonymous	NA	NA	NA	NA
M3	chr5	21813959	12A2p6	cell line	sgMsh2	21813959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	108	0	0	NA	exonic	Slc26a5	nonsynonymous SNV	"Slc26a5:NM_001289787:exon16:c.A1770C:p.E590D,Slc26a5:NM_001289788:exon16:c.A1083C:p.E361D,Slc26a5:NM_030727:exon18:c.A1881C:p.E627D"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997139	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	21885520	12A2p6	cell line	sgMsh2	21885520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	165	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon64:c.A10333G:p.R3445G	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9976221	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	21947494	12A2p6	cell line	sgMsh2	21947494	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	82	0	0	NA	exonic	Reln	stopgain	Reln:NM_001310464:exon45:c.G6973T:p.E2325X	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.710867474	2	0.6793055	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr5	22034612	12A2p6	cell line	sgMsh2	22034612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	150	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon20:c.T2656C:p.F886L	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.702302805	2	0.957101	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	22526395	12A2p6	cell line	sgMsh2	22526395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	130	47	16	0.340425532	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon8:c.A792T:p.A264A	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999246	TTG	synonymous	NA	NA	NA	NA
M3	chr5	23492276	12A2p6	cell line	sgMsh2	23492276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	110	100	27	0.27	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon15:c.A1731C:p.E577D	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	AAG	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
M3	chr5	23844024	12A2p6	cell line	sgMsh2	23844024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	119	650	114	0.175384615	exonic	Tomm7	nonsynonymous SNV	Tomm7:NM_025394:exon1:c.A50C:p.K17T	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.659479463	2	0.9760226	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	74	2	0	0	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	CAC	synonymous	NA	NA	NA	NA
M3	chr5	24391713	12A2p6	cell line	sgMsh2	24391713	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	19	3	1	0.333333333	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon1:c.G204T:p.P68P	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.940489	CCG	synonymous	NA	NA	NA	NA
M3	chr5	24416225	12A2p6	cell line	sgMsh2	24416225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	103	0	0	NA	exonic	Asic3	nonsynonymous SNV	"Asic3:NM_001310474:exon4:c.T942G:p.C314W,Asic3:NM_183000:exon4:c.T942G:p.C314W"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9983755	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	24477100	12A2p6	cell line	sgMsh2	24477100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	152	62	21	0.338709677	exonic	Agap3	nonsynonymous SNV	"Agap3:NM_001256431:exon5:c.T593C:p.V198A,Agap3:NM_001359881:exon5:c.T593C:p.V198A,Agap3:NM_139153:exon5:c.T593C:p.V198A"	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9981562	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	24593719	12A2p6	cell line	sgMsh2	24593719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	80	54	13	0.240740741	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon10:c.T1091C:p.V364A	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9532662	CAC	nonsynonymous	CCTCCA	13	CCTCCACCTCCAC	NA
M3	chr5	25275725	12A2p6	cell line	sgMsh2	25275725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	131	20	3	0.15	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon58:c.A14525G:p.H4842R	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9958204	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	25366098	12A2p6	cell line	sgMsh2	25366098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	56	7	1	0.142857143	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon15:c.T2613C:p.S871S	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9866067	CAC	synonymous	NA	NA	NA	NA
M3	chr5	25372985	12A2p6	cell line	sgMsh2	25372985	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	114	8	1	0.125	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon14:c.T2295A:p.S765S	5qA3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	AAG	synonymous	NA	NA	NA	NA
M3	chr5	26257866	12A2p6	cell line	sgMsh2	26257866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	267	0	0	NA	exonic	Gm7361	synonymous SNV	Gm7361:NM_001281527:exon1:c.T105C:p.N35N	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.997397	ATG	synonymous	NA	NA	NA	NA
M3	chr5	29765555	12A2p6	cell line	sgMsh2	29765555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	133	17	3	0.176470588	exonic	Dnajb6	synonymous SNV	"Dnajb6:NM_001037940:exon7:c.T531C:p.S177S,Dnajb6:NM_001127367:exon7:c.T528C:p.S176S,Dnajb6:NM_001359198:exon7:c.T531C:p.S177S,Dnajb6:NM_001378835:exon7:c.T531C:p.S177S,Dnajb6:NM_011847:exon7:c.T531C:p.S177S"	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9997639	CTT	synonymous	NA	NA	NA	NA
M3	chr5	30920618	12A2p6	cell line	sgMsh2	30920618	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	71	2	0	0	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon8:c.T2720C:p.V907A	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9584872	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.486	108	112	36	0.321428571	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M3	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	87	177	41	0.231638418	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.998282	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	32331276	12A2p6	cell line	sgMsh2	32331276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	161	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon42:c.A2903G:p.Y968C	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.9389553	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	112	634	143	0.22555205	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.646632461	2	0.9789045	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr5	32887005	12A2p6	cell line	sgMsh2	32887005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	203	25	2	0.08	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001170567:exon8:c.A440G:p.K147R,Depdc5:NM_177786:exon8:c.A440G:p.K147R,Depdc5:NM_001025426:exon9:c.A440G:p.K147R"	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999991	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	33026582	12A2p6	cell line	sgMsh2	33026582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	141	671	159	0.236959762	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.A128C:p.N43T	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.5413566	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	33027143	12A2p6	cell line	sgMsh2	33027143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	94	307	80	0.260586319	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.T689C:p.L230P	5qB1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9964135	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	34794116	12A2p6	cell line	sgMsh2	34794116	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	151	29	14	0.482758621	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon4:c.T420A:p.D140E	5qB2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999789	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr5	34966123	12A2p6	cell line	sgMsh2	34966123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	110	30	5	0.166666667	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1249G:p.T417A	5qB2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	34966139	12A2p6	cell line	sgMsh2	34966139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	119	29	5	0.172413793	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1265G:p.D422G	5qB2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998532	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	36809005	12A2p6	cell line	sgMsh2	36809005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	49	82	1	0.012195122	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon17:c.A2843G:p.K948R	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.638067793	2	0.7098775	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	41800833	12A2p6	cell line	sgMsh2	41800833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	138	71	14	0.197183099	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon19:c.A8324G:p.E2775G,Bod1l:NM_001310601:exon19:c.A8324G:p.E2775G"	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	41816885	12A2p6	cell line	sgMsh2	41816885	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.29	92	18	0	0	exonic	Bod1l	frameshift insertion	"Bod1l:NM_001081422:exon10:c.7084dupG:p.E2362Gfs*2,Bod1l:NM_001310601:exon10:c.7084dupG:p.E2362Gfs*2"	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTC	frameshift	C	5	CCCCC	1
M3	chr5	41820669	12A2p6	cell line	sgMsh2	41820669	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	202	50	5	0.1	exonic	Bod1l	frameshift deletion	"Bod1l:NM_001081422:exon10:c.3301delA:p.S1101Afs*56,Bod1l:NM_001310601:exon10:c.3301delA:p.S1101Afs*56"	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.989219195	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr5	41832359	12A2p6	cell line	sgMsh2	41832359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	84	46	23	0.5	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon4:c.T1020C:p.T340T,Bod1l:NM_001310601:exon4:c.T1020C:p.T340T"	5qB3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	CAG	synonymous	NA	NA	NA	NA
M3	chr5	51472896	12A2p6	cell line	sgMsh2	51472896	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	205	34	10	0.294117647	exonic	Ppargc1a	synonymous SNV	Ppargc1a:NM_008904:exon9:c.C1878A:p.P626P	5qC1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999992	AGG	synonymous	NA	NA	NA	NA
M3	chr5	57720612	12A2p6	cell line	sgMsh2	57720612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	136	22	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310606:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310608:exon1:c.T1508C:p.V503A,Pcdh7:NM_018764:exon1:c.T1508C:p.V503A"	5qC1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	61809673	12A2p6	cell line	sgMsh2	61809673	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	221	5	0	0	exonic	G6pd2	nonsynonymous SNV	G6pd2:NM_019468:exon1:c.C790T:p.L264F	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.698020471	2	0.9964216	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr5	62636013	12A2p6	cell line	sgMsh2	62636013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	81	20	7	0.35	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon26:c.T4089C:p.N1363N	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9985308	TAT	synonymous	T	5	TTTTT	NA
M3	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	178	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999959	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	64103865	12A2p6	cell line	sgMsh2	64103865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	120	89	19	0.213483146	exonic	Pgm2	nonsynonymous SNV	"Pgm2:NM_025700:exon6:c.G701T:p.G234V,Pgm2:NM_001356964:exon7:c.G515T:p.G172V"	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	GGT	nonsynonymous	NA	NA	NA	NA
M3	chr5	65141360	12A2p6	cell line	sgMsh2	65141360	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	125	57	7	0.122807018	exonic	Klhl5	frameshift deletion	"Klhl5:NM_001347355:exon2:c.61delA:p.M23Wfs*4,Klhl5:NM_001359401:exon2:c.481delA:p.M163Wfs*4,Klhl5:NM_175174:exon2:c.481delA:p.M163Wfs*4"	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.753690815	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr5	65416892	12A2p6	cell line	sgMsh2	65416892	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	113	710	180	0.253521127	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon11:c.C1307T:p.A436V	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9871789	GGC	nonsynonymous	GGCT	8	GGCTGGCT	NA
M3	chr5	66684780	12A2p6	cell line	sgMsh2	66684780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	76	228	102	0.447368421	exonic	Uchl1	synonymous SNV	Uchl1:NM_011670:exon8:c.A534T:p.R178R	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9980114	GAA	synonymous	NA	NA	NA	NA
M3	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	152	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999802	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr5	69559600	12A2p6	cell line	sgMsh2	69559600	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	221	30	11	0.366666667	exonic	Guf1	nonsynonymous SNV	"Guf1:NM_001310631:exon5:c.G504T:p.Q168H,Guf1:NM_172711:exon5:c.G504T:p.Q168H"	5qC3.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr5	72108379	12A2p6	cell line	sgMsh2	72108379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	189	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon6:c.A616G:p.I206V,Gabrb1:NM_001370968:exon7:c.A517G:p.I173V"	5qC3.2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9999822	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	73520210	12A2p6	cell line	sgMsh2	73520210	A	-	Deletion	Strelka2;Vardict	2	0.2182	55	77	9	0.116883117	exonic	Dcun1d4	frameshift deletion	"Dcun1d4:NM_001190733:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_178896:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_001190734:exon5:c.273delA:p.S94Afs*14"	5qC3.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.934405318	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M3	chr5	73534610	12A2p6	cell line	sgMsh2	73534610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	196	97	26	0.268041237	exonic	Dcun1d4	nonsynonymous SNV	"Dcun1d4:NM_001190733:exon7:c.T419C:p.V140A,Dcun1d4:NM_178896:exon7:c.T419C:p.V140A,Dcun1d4:NM_001190734:exon8:c.T461C:p.V154A"	5qC3.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999986	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	114	10	5	0.5	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	75964693	12A2p6	cell line	sgMsh2	75964693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	135	2	2	1	exonic	Kdr	synonymous SNV	"Kdr:NM_001363216:exon9:c.T1143C:p.V381V,Kdr:NM_010612:exon9:c.T1143C:p.V381V"	5qC3.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999443	CAA	synonymous	NA	NA	NA	NA
M3	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Strelka2;Vardict	2	0.2294	109	27	3	0.111111111	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.982367461	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M3	chr5	81329783	12A2p6	cell line	sgMsh2	81329783	G	A	SNV	Mutect2;MuSe;Vardict	3	0.364	10	24	8	0.333333333	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001347368:exon4:c.G82A:p.A28T,Adgrl3:NM_001359830:exon4:c.G82A:p.A28T,Adgrl3:NM_001359831:exon4:c.G82A:p.A28T,Adgrl3:NM_001347367:exon5:c.G82A:p.A28T,Adgrl3:NM_001347369:exon5:c.G82A:p.A28T,Adgrl3:NM_001359828:exon5:c.G82A:p.A28T,Adgrl3:NM_001359832:exon5:c.G82A:p.A28T,Adgrl3:NM_001359834:exon5:c.G82A:p.A28T,Adgrl3:NM_198702:exon5:c.G82A:p.A28T"	5qD	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.09824153	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr5	81766205	12A2p6	cell line	sgMsh2	81766205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	167	60	35	0.583333333	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon21:c.T3413C:p.I1138T,Adgrl3:NM_001347371:exon22:c.T3428C:p.I1143T,Adgrl3:NM_001347368:exon23:c.T3632C:p.I1211T,Adgrl3:NM_001359826:exon23:c.T2942C:p.I981T,Adgrl3:NM_001359832:exon23:c.T3617C:p.I1206T,Adgrl3:NM_001359833:exon23:c.T3452C:p.I1151T,Adgrl3:NM_001347369:exon24:c.T3632C:p.I1211T,Adgrl3:NM_001359830:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359831:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359834:exon24:c.T3644C:p.I1215T,Adgrl3:NM_001347367:exon25:c.T3659C:p.I1220T,Adgrl3:NM_001359828:exon25:c.T3659C:p.I1220T,Adgrl3:NM_198702:exon25:c.T3659C:p.I1220T"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.999992	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr5	83294647	12A2p6	cell line	sgMsh2	83294647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	76	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon6:c.T578C:p.I193T	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.638067793	2	0.09196973	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	84331605	12A2p6	cell line	sgMsh2	84331605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	134	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon3:c.C539A:p.A180D	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999409	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr5	86118082	12A2p6	cell line	sgMsh2	86118082	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	123	79	4	0.050632911	exonic	Uba6	stopgain	Uba6:NM_172712:exon32:c.G2965T:p.G989X	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	111	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997615	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	87254427	12A2p6	cell line	sgMsh2	87254427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	217	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A344C:p.N115T	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr5	87325458	12A2p6	cell line	sgMsh2	87325458	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.256	81	0	0	NA	exonic	Ugt2a3	frameshift insertion	Ugt2a3:NM_028094:exon6:c.1598dupA:p.N534delinsELGLF	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TCT	frameshift	TTCTTT	12	TTCTTTTTCTTT	1
M3	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	153	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999813	GCA	nonsynonymous	NA	NA	NA	NA
M3	chr5	87843547	12A2p6	cell line	sgMsh2	87843547	T	-	Deletion	Strelka2;Vardict	2	0.2069	145	0	0	NA	exonic	Prr27	frameshift deletion	"Prr27:NM_028648:exon4:c.993delT:p.Y334Tfs*4,Prr27:NM_001163551:exon5:c.1017delT:p.Y342Tfs*4"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.886014942	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr5	87979950	12A2p6	cell line	sgMsh2	87979950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	164	0	0	NA	exonic	Cabs1	synonymous SNV	Cabs1:NM_027631:exon1:c.A459G:p.E153E	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999904	AAG	synonymous	NA	NA	NA	NA
M3	chr5	88328658	12A2p6	cell line	sgMsh2	88328658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	133	0	0	NA	exonic	Prol1	synonymous SNV	Prol1:NM_008644:exon3:c.G906A:p.K302K	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999372	AGT	synonymous	NA	NA	NA	NA
M3	chr5	89701678	12A2p6	cell line	sgMsh2	89701678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	87	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon13:c.A1882C:p.N628H,Adamts3:NM_177872:exon13:c.A1882C:p.N628H"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9584515	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	135	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999443	AAG	synonymous	NA	NA	NA	NA
M3	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	130	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999246	AAC	synonymous	A	5	AAAAA	NA
M3	chr5	90606874	12A2p6	cell line	sgMsh2	90606874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	136	68	17	0.25	exonic	Rassf6	nonsynonymous SNV	"Rassf6:NM_001310656:exon7:c.T544C:p.S182P,Rassf6:NM_028478:exon7:c.T583C:p.S195P"	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M3	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	99	53	17	0.320754717	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr5	91594162	12A2p6	cell line	sgMsh2	91594162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	97	170	18	0.105882353	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.C388T:p.P130S	5qE2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.710867474	2	0.7653669	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	304	71	19	0.267605634	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9999998	CTG	synonymous	NA	NA	NA	NA
M3	chr5	92627441	12A2p6	cell line	sgMsh2	92627441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	117	0	0	NA	exonic	Ccdc158	synonymous SNV	"Ccdc158:NM_001360018:exon21:c.T2916C:p.S972S,Ccdc158:NM_177230:exon21:c.T2904C:p.S968S"	5qE2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9994688	CAC	synonymous	NA	NA	NA	NA
M3	chr5	92941473	12A2p6	cell line	sgMsh2	92941473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	51	51	9	0.176470588	exonic	Shroom3	nonsynonymous SNV	"Shroom3:NM_001077595:exon4:c.A1556G:p.E519G,Shroom3:NM_001077596:exon4:c.A1556G:p.E519G,Shroom3:NM_015756:exon5:c.A2081G:p.E694G"	5qE2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	96534932	12A2p6	cell line	sgMsh2	96534932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	123	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon4:c.A287G:p.H96R	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	96555302	12A2p6	cell line	sgMsh2	96555302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	62	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon9:c.A923G:p.D308G	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9848899	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	96642604	12A2p6	cell line	sgMsh2	96642604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	116	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon23:c.T2836C:p.Y946H	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr5	96739386	12A2p6	cell line	sgMsh2	96739386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	127	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon55:c.T8026C:p.F2676L	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.775102486	1	0.6171204	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	96758230	12A2p6	cell line	sgMsh2	96758230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	84	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon62:c.A9492G:p.P3164P	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9881182	CAC	synonymous	NA	NA	NA	NA
M3	chr5	96776630	12A2p6	cell line	sgMsh2	96776630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	88	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon71:c.A10929C:p.I3643I	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.775102486	1	0.6952896	TAC	synonymous	NA	NA	NA	NA
M3	chr5	97455677	12A2p6	cell line	sgMsh2	97455677	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	235	0	0	NA	exonic	Gk2	nonsynonymous SNV	Gk2:NM_010294:exon1:c.T1301G:p.L434R	5qE3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9999966	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	64	185	36	0.194594595	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9944722	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	100798421	12A2p6	cell line	sgMsh2	100798421	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	11	14	2	0.142857143	exonic	Helq	frameshift deletion	Helq:NM_001081107:exon1:c.53delA:p.N18Tfs*62	5qE4	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr5	104968246	12A2p6	cell line	sgMsh2	104968246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	141	0	0	NA	exonic	Abcg3	nonsynonymous SNV	Abcg3:NM_030239:exon7:c.T721C:p.S241P	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.706585139	2	0.9331082	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	105606595	12A2p6	cell line	sgMsh2	105606595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	104	150	83	0.553333333	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A235G:p.T79A	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9996354	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	106636730	12A2p6	cell line	sgMsh2	106636730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	182	82	17	0.207317073	exonic	Zfp644	synonymous SNV	"Zfp644:NM_001363323:exon2:c.T1875C:p.S625S,Zfp644:NM_001363320:exon3:c.T1950C:p.S650S,Zfp644:NM_001363321:exon3:c.T1950C:p.S650S,Zfp644:NM_001363322:exon3:c.T1917C:p.S639S,Zfp644:NM_026856:exon3:c.T1950C:p.S650S,Zfp644:NM_001363319:exon4:c.T1950C:p.S650S,Zfp644:NM_001363318:exon6:c.T1950C:p.S650S"	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999968	TAC	synonymous	NA	NA	NA	NA
M3	chr5	106901853	12A2p6	cell line	sgMsh2	106901853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	100	0	0	NA	exonic	Hfm1	nonsynonymous SNV	Hfm1:NM_177873:exon12:c.T1241C:p.V414A	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995354	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	107485797	12A2p6	cell line	sgMsh2	107485797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	195	4	1	0.25	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon7:c.T871A:p.L291M	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999985	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr5	107497764	12A2p6	cell line	sgMsh2	107497764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	167	1	0	0	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon12:c.C1484T:p.A495V	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9999474	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr5	107507151	12A2p6	cell line	sgMsh2	107507151	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	101	2	0	0	exonic	Btbd8	stopgain	"Btbd8:NM_001384112:exon6:c.C1279T:p.R427X,Btbd8:NM_001378266:exon17:c.C2815T:p.R939X"	5qE5	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr5	107901925	12A2p6	cell line	sgMsh2	107901925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	129	13	2	0.153846154	exonic	Rpl5	nonsynonymous SNV	Rpl5:NM_016980:exon2:c.T59C:p.F20S	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	52	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.7458934	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	108745687	12A2p6	cell line	sgMsh2	108745687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	133	0	0	NA	exonic	Rnf212	nonsynonymous SNV	Rnf212:NM_001362887:exon9:c.T548C:p.I183T	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9972259	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	110254518	12A2p6	cell line	sgMsh2	110254518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	79	20	0.253164557	exonic	Ankle2	stoploss	"Ankle2:NM_001253814:exon13:c.T2893C:p.X965Q,Ankle2:NM_027922:exon13:c.T2890C:p.X964Q"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr5	110788235	12A2p6	cell line	sgMsh2	110788235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	19	44	9	0.204545455	exonic	Ulk1	nonsynonymous SNV	"Ulk1:NM_001347394:exon23:c.T2407A:p.C803S,Ulk1:NM_009469:exon23:c.T2389A:p.C797S"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.940489	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	110866346	12A2p6	cell line	sgMsh2	110866346	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.168	104	28	6	0.214285714	exonic	Chek2	synonymous SNV	"Chek2:NM_001363308:exon10:c.T474G:p.P158P,Chek2:NM_016681:exon11:c.T1191G:p.P397P"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.719432142	2	0.7518161	CTG	synonymous	NA	NA	NA	NA
M3	chr5	112914941	12A2p6	cell line	sgMsh2	112914941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	47	0	0	NA	exonic	Grk3	nonsynonymous SNV	"Grk3:NM_001285806:exon21:c.T1718C:p.L573P,Grk3:NM_177078:exon21:c.T2039C:p.L680P"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9885657	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	112920136	12A2p6	cell line	sgMsh2	112920136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	102	0	0	NA	exonic	Grk3	nonsynonymous SNV	"Grk3:NM_001285806:exon18:c.T1205C:p.F402S,Grk3:NM_177078:exon18:c.T1526C:p.F509S"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995884	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr5	113577320	12A2p6	cell line	sgMsh2	113577320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	59	0	0	NA	exonic	Wscd2	nonsynonymous SNV	Wscd2:NM_177292:exon7:c.A1220G:p.H407R	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.749408481	1	0.6489635	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	114012587	12A2p6	cell line	sgMsh2	114012587	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	41	0	0	NA	exonic	Dao	frameshift deletion	"Dao:NM_001286396:exon3:c.251delA:p.M86Wfs*4,Dao:NM_001286397:exon3:c.251delA:p.M86Wfs*4,Dao:NM_010018:exon3:c.251delA:p.M86Wfs*4"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr5	114804258	12A2p6	cell line	sgMsh2	114804258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	57	80	17	0.2125	exonic	Ankrd13a	nonsynonymous SNV	"Ankrd13a:NM_001378897:exon15:c.T1604C:p.M535T,Ankrd13a:NM_026718:exon15:c.T1601C:p.M534T"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.578115114	2	0.009139082	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr5	114950753	12A2p6	cell line	sgMsh2	114950753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	51	2	1	0.5	exonic	Hnf1a	nonsynonymous SNV	Hnf1a:NM_009327:exon9:c.A1703T:p.Q568L	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3	chr5	115571482	12A2p6	cell line	sgMsh2	115571482	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	125	92	24	0.260869565	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon2:c.G92T:p.S31I	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.9228613	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	105	23	0.219047619	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	69	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9721641	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	117252547	12A2p6	cell line	sgMsh2	117252547	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	18	124	27	0.217741935	exonic	Taok3	nonsynonymous SNV	"Taok3:NM_001081308:exon15:c.G1572T:p.K524N,Taok3:NM_001199685:exon16:c.G1572T:p.K524N,Taok3:NM_183306:exon16:c.G1572T:p.K524N"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9369825	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr5	117371125	12A2p6	cell line	sgMsh2	117371125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	115	180	52	0.288888889	exonic	Wsb2	nonsynonymous SNV	Wsb2:NM_021539:exon4:c.T464C:p.V155A	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998129	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	117867562	12A2p6	cell line	sgMsh2	117867562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	64	0	0	NA	exonic	Nos1	nonsynonymous SNV	Nos1:NM_008712:exon1:c.A346G:p.T116A	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.7546615	AAC	nonsynonymous	C	5	CCCCC	NA
M3	chr5	118201149	12A2p6	cell line	sgMsh2	118201149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	100	0	0	NA	exonic	Rnft2	nonsynonymous SNV	"Rnft2:NM_001109902:exon10:c.A1202G:p.Q401R,Rnft2:NM_172998:exon11:c.A1205G:p.Q402R"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995354	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	120524323	12A2p6	cell line	sgMsh2	120524323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	84	31	7	0.225806452	exonic	Slc8b1	nonsynonymous SNV	"Slc8b1:NM_001177594:exon9:c.A931G:p.K311E,Slc8b1:NM_001177595:exon10:c.A982G:p.K328E,Slc8b1:NM_133221:exon10:c.A982G:p.K328E"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9904659	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr5	121534348	12A2p6	cell line	sgMsh2	121534348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	120	127	29	0.228346457	exonic	Mapkapk5	nonsynonymous SNV	Mapkapk5:NM_010765:exon7:c.A566G:p.Y189C	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9998618	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr5	123037360	12A2p6	cell line	sgMsh2	123037360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.148	76	0	0	NA	exonic	Morn3	frameshift deletion	"Morn3:NM_001347456:exon4:c.464delG:p.S155Mfs*24,Morn3:NM_029112:exon5:c.649delG:p.V217Wfs*3"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.633785458	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3	chr5	123143390	12A2p6	cell line	sgMsh2	123143390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	51	17	3	0.176470588	exonic	Setd1b	nonsynonymous SNV	Setd1b:NM_001040398:exon3:c.A206G:p.D69G	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	123583549	12A2p6	cell line	sgMsh2	123583549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	72	103	43	0.417475728	exonic	Clip1	nonsynonymous SNV	"Clip1:NM_001359222:exon19:c.A3251G:p.D1084G,Clip1:NM_001291229:exon20:c.A3368G:p.D1123G,Clip1:NM_001359220:exon20:c.A3584G:p.D1195G,Clip1:NM_001359221:exon20:c.A3356G:p.D1119G,Clip1:NM_019765:exon20:c.A3596G:p.D1199G,Clip1:NM_001347468:exon21:c.A3377G:p.D1126G"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	166	23	6	0.260869565	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9999771	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	81	19	4	0.210526316	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr5	123998901	12A2p6	cell line	sgMsh2	123998901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	27	8	3	0.375	exonic	Hip1r	nonsynonymous SNV	Hip1r:NM_145070:exon19:c.A1931C:p.D644A	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9498751	GAC	nonsynonymous	C	5	CCCCC	NA
M3	chr5	124089692	12A2p6	cell line	sgMsh2	124089692	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	41	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon2:c.C485T:p.A162V	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9273779	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr5	124292354	12A2p6	cell line	sgMsh2	124292354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	140	10	1	0.1	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon10:c.T1778G:p.L593R,Mphosph9:NM_001277867:exon11:c.T1868G:p.L623R"	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9973333	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	124530704	12A2p6	cell line	sgMsh2	124530704	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	46	58	12	0.206896552	exonic	Rilpl1	nonsynonymous SNV	Rilpl1:NM_021430:exon1:c.C280T:p.R94C	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr5	124803824	12A2p6	cell line	sgMsh2	124803824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	163	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon50:c.A8483G:p.H2828R	5qF	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9926524	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	125415139	12A2p6	cell line	sgMsh2	125415139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	80	65	18	0.276923077	exonic	Dhx37	nonsynonymous SNV	Dhx37:NM_203319:exon27:c.T3395C:p.L1132P	5qG1.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9972026	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	125778827	12A2p6	cell line	sgMsh2	125778827	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.175	43	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon6:c.T1622C:p.V541A	5qG1.1	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.749408481	1	0.7075816	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	127551658	12A2p6	cell line	sgMsh2	127551658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	92	0	0	NA	exonic	Tmem132c	synonymous SNV	Tmem132c:NM_175432:exon6:c.A1623G:p.T541T	5qG1.2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	CAG	synonymous	NA	NA	NA	NA
M3	chr5	127604164	12A2p6	cell line	sgMsh2	127604164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	132	50	8	0.16	exonic	Slc15a4	nonsynonymous SNV	Slc15a4:NM_133895:exon4:c.A1039C:p.S347R	5qG1.2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7562255	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	127784717	12A2p6	cell line	sgMsh2	127784717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	129	0	0	NA	exonic	Tmem132d	nonsynonymous SNV	Tmem132d:NM_172885:exon9:c.A2339G:p.K780R	5qG1.2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	129162644	12A2p6	cell line	sgMsh2	129162644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	179	0	0	NA	exonic	Adgrd1	nonsynonymous SNV	"Adgrd1:NM_001347486:exon14:c.T1514C:p.L505P,Adgrd1:NM_001081342:exon15:c.T1610C:p.L537P"	5qG1.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999961	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	129595427	12A2p6	cell line	sgMsh2	129595427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	104	0	0	NA	exonic	Mmp17	nonsynonymous SNV	Mmp17:NM_011846:exon4:c.T442G:p.S148A	5qG1.3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr5	134196572	12A2p6	cell line	sgMsh2	134196572	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	65	14	1	0.071428571	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon5:c.A500T:p.E167V,Gtf2ird2:NM_053266:exon5:c.A500T:p.E167V"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9854474	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	99	22	8	0.363636364	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	134362547	12A2p6	cell line	sgMsh2	134362547	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	59	91	17	0.186813187	exonic	Gtf2ird1	nonsynonymous SNV	"Gtf2ird1:NM_001081468:exon23:c.C2380T:p.P794S,Gtf2ird1:NM_001081466:exon24:c.C2536T:p.P846S,Gtf2ird1:NM_001347488:exon24:c.C2536T:p.P846S,Gtf2ird1:NM_001081463:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081464:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081465:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081462:exon26:c.C2674T:p.P892S,Gtf2ird1:NM_020331:exon26:c.C2674T:p.P892S"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9384552	GGT	nonsynonymous	NA	NA	NA	NA
M3	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	154	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.852184501	1	0.9803168	TAC	synonymous	NA	NA	NA	NA
M3	chr5	134688355	12A2p6	cell line	sgMsh2	134688355	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	45	7	0	0	exonic	Limk1	frameshift deletion	Limk1:NM_010717:exon1:c.41delG:p.R14Lfs*27	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.899290177	NA	NA	ACG	frameshift	NA	NA	NA	-1
M3	chr5	135217642	12A2p6	cell line	sgMsh2	135217642	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	149	120	4	0.033333333	exonic	Baz1b	frameshift deletion	Baz1b:NM_011714:exon7:c.1944delT:p.L650Cfs*2	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr5	135412712	12A2p6	cell line	sgMsh2	135412712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	71	45	11	0.244444444	exonic	Hip1	nonsynonymous SNV	"Hip1:NM_001382848:exon30:c.T2834C:p.V945A,Hip1:NM_146001:exon30:c.T2936C:p.V979A"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	CAC	nonsynonymous	TCCAGC	12	TCCAGCTCCAGC	NA
M3	chr5	135854387	12A2p6	cell line	sgMsh2	135854387	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	75	0	0	NA	exonic	Srrm3	synonymous SNV	Srrm3:NM_021403:exon7:c.C595T:p.L199L	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9978873	CCT	synonymous	C	5	CCCCC	NA
M3	chr5	135911218	12A2p6	cell line	sgMsh2	135911218	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	69	401	33	0.082294264	exonic	Ywhag	frameshift deletion	Ywhag:NM_018871:exon2:c.521delG:p.G174Afs*37	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	186	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8973952	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr5	136064128	12A2p6	cell line	sgMsh2	136064128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	2	0	0	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A707G:p.H236R,Upk3bl:NM_027158:exon6:c.A710G:p.H237R"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.7461363	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr5	137400012	12A2p6	cell line	sgMsh2	137400012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	1	0	0	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon66:c.T12757C:p.C4253R	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.9405361	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	137484567	12A2p6	cell line	sgMsh2	137484567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	151	0	0	NA	exonic	Epo	synonymous SNV	"Epo:NM_001312875:exon3:c.T162C:p.G54G,Epo:NM_007942:exon3:c.T162C:p.G54G"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.659479463	2	0.9941547	AAC	synonymous	NA	NA	NA	NA
M3	chr5	137522427	12A2p6	cell line	sgMsh2	137522427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	26	35	7	0.2	exonic	Gigyf1	nonsynonymous SNV	Gigyf1:NM_031408:exon12:c.A1346C:p.E449A	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9602973	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
M3	chr5	137607443	12A2p6	cell line	sgMsh2	137607443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	119	131	47	0.358778626	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon5:c.G687A:p.K229K	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.7919484	TCT	synonymous	NA	NA	NA	NA
M3	chr5	137636996	12A2p6	cell line	sgMsh2	137636996	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	60	56	11	0.196428571	exonic	Lrch4	synonymous SNV	"Lrch4:NM_001168652:exon6:c.G747A:p.K249K,Lrch4:NM_146164:exon6:c.G747A:p.K249K"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.72799681	1	7.76E-05	AGG	synonymous	NA	NA	NA	NA
M3	chr5	139223600	12A2p6	cell line	sgMsh2	139223600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	119	75	21	0.28	exonic	Sun1	synonymous SNV	"Sun1:NM_001256118:exon2:c.T84C:p.S28S,Sun1:NM_001256115:exon3:c.T84C:p.S28S,Sun1:NM_001256116:exon3:c.T84C:p.S28S,Sun1:NM_001256117:exon3:c.T84C:p.S28S,Sun1:NM_001359494:exon3:c.T84C:p.S28S,Sun1:NM_001359496:exon3:c.T84C:p.S28S,Sun1:NM_024451:exon3:c.T84C:p.S28S"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9888923	GTT	synonymous	NA	NA	NA	NA
M3	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	160	79	23	0.291139241	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999878	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr5	139706886	12A2p6	cell line	sgMsh2	139706886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	57	18	3	0.166666667	exonic	Micall2	nonsynonymous SNV	Micall2:NM_174850:exon17:c.T2980G:p.S994A	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	GAC	nonsynonymous	GGACTT	12	GGACTTGGACTT	NA
M3	chr5	139808448	12A2p6	cell line	sgMsh2	139808448	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	79	1	0	0	exonic	Tmem184a	frameshift deletion	"Tmem184a:NM_144914:exon2:c.303delC:p.I102Sfs*37,Tmem184a:NM_001161548:exon3:c.375delC:p.I126Sfs*37"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	82	93	18	0.193548387	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.612373788	2	0.9616193	CTT	synonymous	NA	NA	NA	NA
M3	chr5	140193962	12A2p6	cell line	sgMsh2	140193962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	79	45	5	0.111111111	exonic	Mad1l1	synonymous SNV	"Mad1l1:NM_001359025:exon11:c.T1170C:p.H390H,Mad1l1:NM_010752:exon11:c.T1170C:p.H390H"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9907329	CAT	synonymous	NA	NA	NA	NA
M3	chr5	141962797	12A2p6	cell line	sgMsh2	141962797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	105	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon13:c.A1896G:p.I632M	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9732445	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr5	145582554	12A2p6	cell line	sgMsh2	145582554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	325	0	0	NA	exonic	Cyp3a41a;Cyp3a41b	synonymous SNV	"Cyp3a41b:NM_001105159:exon2:c.A126G:p.K42K,Cyp3a41a:NM_017396:exon2:c.A126G:p.K42K"	5qG2	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.659479463	2	0.9999975	GTT	synonymous	NA	NA	NA	NA
M3	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	249	42	11	0.261904762	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr5	146583706	12A2p6	cell line	sgMsh2	146583706	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	125	0	0	NA	exonic	Gpr12	synonymous SNV	"Gpr12:NM_008151:exon1:c.T405G:p.T135T,Gpr12:NM_001010941:exon2:c.T405G:p.T135T,Gpr12:NM_001359055:exon2:c.T405G:p.T135T,Gpr12:NM_001359056:exon2:c.T405G:p.T135T,Gpr12:NM_001359057:exon2:c.T405G:p.T135T"	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	1	0.9998979	CAG	synonymous	NA	NA	NA	NA
M3	chr5	149593124	12A2p6	cell line	sgMsh2	149593124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	124	0	0	NA	exonic	Wdr95	nonsynonymous SNV	Wdr95:NM_029440:exon16:c.T1003C:p.F335L	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.9333377	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr5	150662367	12A2p6	cell line	sgMsh2	150662367	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	161	167	38	0.22754491	exonic	N4bp2l2	frameshift deletion	"N4bp2l2:NM_001362416:exon2:c.147delA:p.K49Nfs*29,N4bp2l2:NM_201369:exon2:c.147delA:p.K49Nfs*29"	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3	chr5	151561858	12A2p6	cell line	sgMsh2	151561858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	214	0	0	NA	exonic	Vmn2r18	nonsynonymous SNV	"Vmn2r18:NM_001102582:exon5:c.A2170G:p.S724G,Vmn2r18:NM_001385214:exon6:c.A2395G:p.S799G"	5qG3	chr5-3344463-151647482	4	2	2	0.96	4.111040811	NA	1	0.77938482	2	0.5036725	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.399	80	102	10	0.098039216	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M3	chr6	3373447	12A2p6	cell line	sgMsh2	3373447	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	221	36	3	0.083333333	exonic	Samd9l	synonymous SNV	Samd9l:NM_010156:exon2:c.A3813C:p.P1271P	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.672326466	2	0.9993802	TTG	synonymous	NA	NA	NA	NA
M3	chr6	3373758	12A2p6	cell line	sgMsh2	3373758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	220	43	9	0.209302326	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.A3502G:p.T1168A	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.805078826	1	0.8439709	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	3375035	12A2p6	cell line	sgMsh2	3375035	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	264	38	4	0.105263158	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.C2225T:p.A742V	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.689455803	2	0.9995638	CGC	nonsynonymous	NA	NA	NA	NA
M3	chr6	3467640	12A2p6	cell line	sgMsh2	3467640	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.138	90	0	0	NA	exonic	Hepacam2	frameshift deletion	Hepacam2:NM_178899:exon5:c.1125delA:p.K375Nfs*7	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.590962117	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr6	3483495	12A2p6	cell line	sgMsh2	3483495	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	189	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon3:c.C513T:p.C171C	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.710867474	2	0.978755	GGC	synonymous	NA	NA	NA	NA
M3	chr6	4516012	12A2p6	cell line	sgMsh2	4516012	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	81	0	0	NA	exonic	Col1a2	stopgain	Col1a2:NM_007743:exon10:c.C502T:p.Q168X	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.723714476	2	0.598685	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr6	4536042	12A2p6	cell line	sgMsh2	4536042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	137	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon44:c.T2920C:p.S974P	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.873596172	1	0.9896628	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	207	195	34	0.174358974	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.642350127	2	0.9998391	CCG	nonsynonymous	NA	NA	NA	NA
M3	chr6	7685200	12A2p6	cell line	sgMsh2	7685200	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	113	290	25	0.086206897	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T456A:p.D152E	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.629503124	2	0.9887826	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	8103501	12A2p6	cell line	sgMsh2	8103501	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon15:c.G1294T:p.G432W	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.8222447	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.0714	112	55	1	0.018181818	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.30575866	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M3	chr6	12503957	12A2p6	cell line	sgMsh2	12503957	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	132	2	1	0.5	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon3:c.G1197A:p.E399E	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.590962117	2	0.9989227	GCT	synonymous	NA	NA	NA	NA
M3	chr6	15379796	12A2p6	cell line	sgMsh2	15379796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	69	0	0	NA	exonic	Foxp2	synonymous SNV	"Foxp2:NM_001286607:exon6:c.A678G:p.Q226Q,Foxp2:NM_212435:exon6:c.A741G:p.Q247Q,Foxp2:NM_053242:exon8:c.A741G:p.Q247Q"	6qA1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.843619833	1	0.9210381	AAG	synonymous	NA	NA	NA	NA
M3	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	162	782	121	0.154731458	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.458209757	2	8.54E-08	GTT	synonymous	NA	NA	NA	NA
M3	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	158	790	125	0.158227848	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.381127742	3	0.9936094	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	294	1	0	0	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.646632461	2	0.9999969	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	146	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.518162436	2	0.9866047	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.617	177	154	101	0.655844156	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	4	1	1	0.9999956	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M3	chr6	27363364	12A2p6	cell line	sgMsh2	27363364	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	191	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2151C:p.D717D,Grm8:NM_001361125:exon9:c.T2151C:p.D717D,Grm8:NM_008174:exon9:c.T2151C:p.D717D"	6qA3.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.762255484	2	0.7009945	GAT	synonymous	G	7	GGGGGGG	NA
M3	chr6	28668629	12A2p6	cell line	sgMsh2	28668629	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	144	391	57	0.145780051	exonic	Snd1	synonymous SNV	Snd1:NM_019776:exon12:c.T1314C:p.R438R	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.368280739	3	0.9945456	GTA	synonymous	NA	NA	NA	NA
M3	chr6	29128679	12A2p6	cell line	sgMsh2	29128679	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	108	175	0	0	exonic	Rbm28	frameshift deletion	Rbm28:NM_133925:exon17:c.1765delA:p.M589Wfs*5	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.578115114	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr6	29433497	12A2p6	cell line	sgMsh2	29433497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	112	52	6	0.115384615	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon1:c.C39T:p.L13L,Flnc:NM_001311074:exon1:c.C39T:p.L13L"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.710867474	2	0.8339735	TCG	synonymous	CGGCCT	12	CGGCCTCGGCCT	NA
M3	chr6	29443464	12A2p6	cell line	sgMsh2	29443464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	108	96	18	0.1875	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001081185:exon10:c.T1643C:p.V548A,Flnc:NM_001311074:exon10:c.T1643C:p.V548A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.706585139	2	0.8378026	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	29460885	12A2p6	cell line	sgMsh2	29460885	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	103	104	17	0.163461538	exonic	Flnc	synonymous SNV	"Flnc:NM_001311074:exon46:c.C7875T:p.T2625T,Flnc:NM_001081185:exon47:c.C7974T:p.T2658T"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.847902167	1	0.9530423	CCG	synonymous	NA	NA	NA	NA
M3	chr6	29461045	12A2p6	cell line	sgMsh2	29461045	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	105	117	23	0.196581197	exonic	Flnc	frameshift deletion	"Flnc:NM_001311074:exon47:c.7918delG:p.V2640Cfs*12,Flnc:NM_001081185:exon48:c.8017delG:p.V2673Cfs*12"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.847902167	NA	NA	CGT	frameshift	NA	NA	NA	-1
M3	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Vardict	2	0.093	46	2	2	1	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.398257079	2	0.009689582	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	30119035	12A2p6	cell line	sgMsh2	30119035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	105	31	3	0.096774194	exonic	Nrf1	synonymous SNV	"Nrf1:NM_001164226:exon10:c.A1152G:p.S384S,Nrf1:NM_001164227:exon10:c.A1152G:p.S384S,Nrf1:NM_001164228:exon10:c.A1152G:p.S384S,Nrf1:NM_001164230:exon10:c.A1152G:p.S384S,Nrf1:NM_001361692:exon10:c.A1152G:p.S384S,Nrf1:NM_001361694:exon10:c.A1152G:p.S384S,Nrf1:NM_001361695:exon10:c.A1152G:p.S384S,Nrf1:NM_010938:exon10:c.A1152G:p.S384S,Nrf1:NM_001164229:exon11:c.A1188G:p.S396S,Nrf1:NM_001361693:exon11:c.A1188G:p.S396S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	0.5054763	CAC	synonymous	NA	NA	NA	NA
M3	chr6	30129339	12A2p6	cell line	sgMsh2	30129339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	79	0	0	NA	exonic	Nrf1	nonsynonymous SNV	"Nrf1:NM_001164230:exon12:c.T1507C:p.C503R,Nrf1:NM_001164229:exon13:c.T1543C:p.C515R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.578115114	2	0.976298	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	30370456	12A2p6	cell line	sgMsh2	30370456	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	109	96	17	0.177083333	exonic	Zc3hc1	nonsynonymous SNV	"Zc3hc1:NM_001311086:exon9:c.A1246C:p.S416R,Zc3hc1:NM_172735:exon9:c.A1246C:p.S416R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.762255484	1	8.56E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	30519689	12A2p6	cell line	sgMsh2	30519689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	156	0	0	NA	exonic	Ssmem1	synonymous SNV	"Ssmem1:NM_027073:exon3:c.A372G:p.S124S,Ssmem1:NM_029373:exon3:c.A516G:p.S172S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.496750765	2	0.9511338	CAC	synonymous	NA	NA	NA	NA
M3	chr6	30547176	12A2p6	cell line	sgMsh2	30547176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	170	0	0	NA	exonic	Cpa2	synonymous SNV	Cpa2:NM_001024698:exon5:c.T450C:p.S150S	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.826490496	1	0.9424583	CTT	synonymous	NA	NA	NA	NA
M3	chr6	30581677	12A2p6	cell line	sgMsh2	30581677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	136	0	0	NA	exonic	Cpa4	nonsynonymous SNV	Cpa4:NM_027926:exon7:c.A622G:p.T208A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.52244477	2	0.9880824	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	106	88	19	0.215909091	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	2	0.9813451	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	133	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.865031504	1	0.9840639	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	35289901	12A2p6	cell line	sgMsh2	35289901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	53	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon3:c.G258A:p.T86T	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.822208162	1	0.870914	GCG	synonymous	NA	NA	NA	NA
M3	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	396	45	12	0.266666667	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.6766088	2	0.9999992	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	40386838	12A2p6	cell line	sgMsh2	40386838	T	A	SNV	Mutect2;MuSe;Vardict	3	0.101	162	9	2	0.222222222	exonic	Agk	nonsynonymous SNV	Agk:NM_023538:exon12:c.T751A:p.S251T	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.432515752	3	0.8287654	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	40465892	12A2p6	cell line	sgMsh2	40465892	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	154	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon12:c.T1597G:p.S533A	6qB1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	0.6863609	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	134	483	62	0.128364389	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.706585139	2	0.9186922	ACG	synonymous	NA	NA	NA	NA
M3	chr6	42406480	12A2p6	cell line	sgMsh2	42406480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	134	0	0	NA	exonic	Tas2r135	nonsynonymous SNV	Tas2r135:NM_199159:exon1:c.A952G:p.R318G	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.668044132	2	0.9823964	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	42593742	12A2p6	cell line	sgMsh2	42593742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	267	0	0	NA	exonic	Tcaf3	nonsynonymous SNV	Tcaf3:NM_203396:exon2:c.A1075C:p.I359L	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.689455803	2	0.9996077	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr6	42896714	12A2p6	cell line	sgMsh2	42896714	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	275	0	0	NA	exonic	Olfr448	frameshift deletion	Olfr448:NM_146273:exon1:c.262delA:p.K89Nfs*8	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	152	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	2	0.9996529	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	43523898	12A2p6	cell line	sgMsh2	43523898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	182	34	2	0.058823529	exonic	Tpk1	nonsynonymous SNV	"Tpk1:NM_001311111:exon5:c.T244C:p.Y82H,Tpk1:NM_013861:exon5:c.T244C:p.Y82H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.8744974	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	48450153	12A2p6	cell line	sgMsh2	48450153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	99	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon6:c.A824G:p.E275G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.942113519	1	0.9971016	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	92	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.548138775	2	0.988297	GTC	synonymous	NA	NA	NA	NA
M3	chr6	48462166	12A2p6	cell line	sgMsh2	48462166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	56	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon30:c.C4747T:p.R1583W	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.749408481	1	0.6603875	TCG	nonsynonymous	NA	NA	NA	NA
M3	chr6	48472446	12A2p6	cell line	sgMsh2	48472446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	96	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon48:c.C7320T:p.A2440A	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.698020471	2	0.8227307	CCT	synonymous	NA	NA	NA	NA
M3	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	70	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.462492091	2	0.8243028	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	121	5	0	0	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	2	0.9914483	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	48619665	12A2p6	cell line	sgMsh2	48619665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	52	16	3	0.1875	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A472G:p.R158G	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.698020471	2	0.5232274	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	49417382	12A2p6	cell line	sgMsh2	49417382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	228	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon7:c.C608T:p.P203L,Stk31:NM_029916:exon7:c.C677T:p.P226L"	6qB2.3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.612373788	2	0.9999928	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	54218559	12A2p6	cell line	sgMsh2	54218559	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	67	65	13	0.2	exonic	Chn2	nonsynonymous SNV	Chn2:NM_001163640:exon5:c.A212C:p.E71A	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.612373788	2	0.9116641	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	54622225	12A2p6	cell line	sgMsh2	54622225	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	149	50	11	0.22	exonic	Plekha8	nonsynonymous SNV	"Plekha8:NM_001001335:exon7:c.C608T:p.T203I,Plekha8:NM_001164361:exon7:c.C743T:p.T248I"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.749408481	2	0.7115302	ACA	nonsynonymous	NA	NA	NA	NA
M3	chr6	55260598	12A2p6	cell line	sgMsh2	55260598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	163	9	1	0.111111111	exonic	Mindy4	nonsynonymous SNV	"Mindy4:NM_001142781:exon7:c.A1157C:p.K386T,Mindy4:NM_177883:exon7:c.A1157C:p.K386T"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.603809119	2	0.9997689	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	55379745	12A2p6	cell line	sgMsh2	55379745	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	147	0	0	NA	exonic	Ghrhr	nonsynonymous SNV	Ghrhr:NM_001003685:exon4:c.C326A:p.P109H	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.77938482	1	0.6209945	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	55479287	12A2p6	cell line	sgMsh2	55479287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	117	0	0	NA	exonic	Adcyap1r1	nonsynonymous SNV	"Adcyap1r1:NM_001025372:exon9:c.T659C:p.F220S,Adcyap1r1:NM_007407:exon9:c.T659C:p.F220S"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.950678188	1	0.9990131	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	56179104	12A2p6	cell line	sgMsh2	56179104	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	222	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon4:c.G454A:p.D152N,Pde1c:NM_001159956:exon4:c.G370A:p.D124N,Pde1c:NM_001025568:exon5:c.G481A:p.D161N,Pde1c:NM_001159953:exon5:c.G481A:p.D161N,Pde1c:NM_001159957:exon5:c.G397A:p.D133N,Pde1c:NM_001355475:exon5:c.G481A:p.D161N,Pde1c:NM_001159955:exon6:c.G481A:p.D161N,Pde1c:NM_001159960:exon6:c.G481A:p.D161N,Pde1c:NM_011054:exon6:c.G481A:p.D161N"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.363998405	3	0.9999389	TCG	nonsynonymous	NA	NA	NA	NA
M3	chr6	56730679	12A2p6	cell line	sgMsh2	56730679	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	114	95	5	0.052631579	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon8:c.A608C:p.K203T	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.668044132	2	0.9601222	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	56956940	12A2p6	cell line	sgMsh2	56956940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	249	0	0	NA	exonic	Vmn1r4	nonsynonymous SNV	Vmn1r4:NM_134176:exon1:c.T428G:p.F143C	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.749408481	2	0.9301408	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	57210453	12A2p6	cell line	sgMsh2	57210453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	402	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.T596C:p.M199T	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.565268112	2	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr6	57432499	12A2p6	cell line	sgMsh2	57432499	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.123	219	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.A809T:p.Y270F	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.526727104	2	0.9977886	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	153	14	2	0.142857143	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.80936116	1	0.8660811	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	346	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.668044132	2	0.9999976	GTA	nonsynonymous	T	5	TTTTT	NA
M3	chr6	58956728	12A2p6	cell line	sgMsh2	58956728	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	98	0	0	NA	exonic	Fam13a	synonymous SNV	Fam13a:NM_153574:exon9:c.C876A:p.A292A	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.381127742	3	0.09557704	AGG	synonymous	NA	NA	NA	NA
M3	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	166	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.612373788	2	0.9997215	CCT	synonymous	NA	NA	NA	NA
M3	chr6	65120012	12A2p6	cell line	sgMsh2	65120012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	128	30	5	0.166666667	exonic	Hpgds	nonsynonymous SNV	Hpgds:NM_019455:exon6:c.A512G:p.Y171C	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.80936116	1	0.8611275	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.08	331	278	0	0	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.342586734	3	8.41E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	67486278	12A2p6	cell line	sgMsh2	67486278	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	153	0	0	NA	exonic	Il23r	nonsynonymous SNV	Il23r:NM_144548:exon3:c.G230T:p.R77M	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.693738137	2	0.9735227	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	67535275	12A2p6	cell line	sgMsh2	67535275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	97	0	0	NA	exonic	Tacstd2	synonymous SNV	Tacstd2:NM_020047:exon1:c.A432C:p.R144R	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.822208162	1	0.8964099	TTC	synonymous	NA	NA	NA	NA
M3	chr6	71134110	12A2p6	cell line	sgMsh2	71134110	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	107	4	0	0	exonic	Thnsl2	nonsynonymous SNV	"Thnsl2:NM_001033929:exon5:c.T773G:p.V258G,Thnsl2:NM_178413:exon6:c.T773G:p.V258G"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	1	1	0.999696	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	244	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.80936116	1	0.8828638	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	211	145	15	0.103448276	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.698020471	2	0.9950417	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.817925828	1	0.8717886	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	72555640	12A2p6	cell line	sgMsh2	72555640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	140	343	64	0.186588921	exonic	Capg	nonsynonymous SNV	"Capg:NM_001042534:exon3:c.C187A:p.L63M,Capg:NM_001271395:exon3:c.C187A:p.L63M,Capg:NM_007599:exon3:c.C187A:p.L63M,Capg:NM_001271415:exon4:c.C187A:p.L63M"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.822208162	1	0.916915	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	146	291	48	0.164948454	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9939768	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr6	73044721	12A2p6	cell line	sgMsh2	73044721	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	100	1	0	0	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon64:c.G10617T:p.M3539I	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.642350127	2	0.9672214	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr6	73138717	12A2p6	cell line	sgMsh2	73138717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	164	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon31:c.T4697C:p.F1566S	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.826490496	1	0.9401446	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr6	73469521	12A2p6	cell line	sgMsh2	73469521	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	269	0	0	NA	exonic	4931417E11Rik	nonsynonymous SNV	4931417E11Rik:NM_025737:exon1:c.A44T:p.K15I	6qC1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	2	0.9999996	TTT	nonsynonymous	T	5	TTTTT	NA
M3	chr6	76882721	12A2p6	cell line	sgMsh2	76882721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	196	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon18:c.A2547G:p.A849A,Ctnna2:NM_009819:exon19:c.A2691G:p.A897A,Ctnna2:NM_145732:exon19:c.A2547G:p.A849A,Ctnna2:NM_001109764:exon20:c.A2691G:p.A897A"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.659479463	2	0.9992132	CTG	synonymous	NA	NA	NA	NA
M3	chr6	78376505	12A2p6	cell line	sgMsh2	78376505	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.161	102	0	0	NA	exonic	Reg3d	frameshift insertion	"Reg3d:NM_001161741:exon4:c.215dupA:p.N72Kfs*8,Reg3d:NM_013893:exon5:c.353dupA:p.N118Kfs*8"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.689455803	NA	NA	CAT	frameshift	TCCA	9	TCCATCCAT	1
M3	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	150	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.783667155	1	0.6614304	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr6	83079167	12A2p6	cell line	sgMsh2	83079167	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	189	13	1	0.076923077	exonic	Pcgf1	nonsynonymous SNV	Pcgf1:NM_197992:exon3:c.T215C:p.M72T	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.766537818	2	0.6401326	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr6	83671721	12A2p6	cell line	sgMsh2	83671721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	116	0	0	NA	exonic	Cd207	nonsynonymous SNV	Cd207:NM_144943:exon6:c.T958G:p.F320V	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.775102486	1	0.6400063	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr6	83675691	12A2p6	cell line	sgMsh2	83675691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	143	0	0	NA	exonic	Cd207	synonymous SNV	Cd207:NM_144943:exon3:c.T456C:p.S152S	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.749408481	2	0.6903308	GAC	synonymous	NA	NA	NA	NA
M3	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	101	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.565268112	2	0.9940572	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	86449857	12A2p6	cell line	sgMsh2	86449857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	166	15	4	0.266666667	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon5:c.A1001G:p.K334R,C87436:NM_001243742:exon5:c.A1031G:p.K344R,C87436:NM_001364555:exon5:c.A1031G:p.K344R,C87436:NM_001364556:exon5:c.A1031G:p.K344R,C87436:NM_001364557:exon5:c.A1031G:p.K344R,C87436:NM_001364558:exon5:c.A1001G:p.K334R,C87436:NM_146170:exon5:c.A1031G:p.K344R"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.719432142	2	0.9386867	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr6	87465634	12A2p6	cell line	sgMsh2	87465634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	58	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon8:c.A800C:p.K267T,Arhgap25:NM_001037727:exon9:c.A1067C:p.K356T,Arhgap25:NM_175476:exon9:c.A989C:p.K330T"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.775102486	1	0.748816	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	87845519	12A2p6	cell line	sgMsh2	87845519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	256	976	150	0.153688525	exonic	Cnbp	nonsynonymous SNV	"Cnbp:NM_001109745:exon3:c.T142C:p.Y48H,Cnbp:NM_001109746:exon3:c.T142C:p.Y48H,Cnbp:NM_001347325:exon3:c.T163C:p.Y55H,Cnbp:NM_001355195:exon3:c.T145C:p.Y49H,Cnbp:NM_013493:exon3:c.T163C:p.Y55H"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9999616	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	114	98	16	0.163265306	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.856466836	1	0.9695875	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	47	43	4	0.093023256	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.586679782	2	0.8162346	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	89332172	12A2p6	cell line	sgMsh2	89332172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	119	145	22	0.151724138	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon18:c.T3424C:p.F1142L	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.668044132	2	0.9674351	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
M3	chr6	89977074	12A2p6	cell line	sgMsh2	89977074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	241	0	0	NA	exonic	Vmn1r46	synonymous SNV	Vmn1r46:NM_053229:exon1:c.T904C:p.L302L	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.663761798	2	0.9998549	ATT	synonymous	NA	NA	NA	NA
M3	chr6	90370356	12A2p6	cell line	sgMsh2	90370356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	97	18	5	0.277777778	exonic	Zxdc	nonsynonymous SNV	"Zxdc:NM_030260:exon1:c.A698G:p.H233R,Zxdc:NM_173002:exon1:c.A698G:p.H233R"	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.745126147	2	8.97E-07	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	147	102	21	0.205882353	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.351151403	3	0.9984511	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr6	91914790	12A2p6	cell line	sgMsh2	91914790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	154	0	0	NA	exonic	4930590J08Rik	nonsynonymous SNV	4930590J08Rik:NM_198668:exon4:c.A32C:p.Y11S	6qD1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.672326466	2	0.9906085	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	372	79	13	0.164556962	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.719432142	2	0.9997	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	106353647	12A2p6	cell line	sgMsh2	106353647	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	209	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon5:c.C225T:p.F75F,Cntn4:NM_001109751:exon6:c.C225T:p.F75F,Cntn4:NM_001364566:exon6:c.C225T:p.F75F,Cntn4:NM_001109749:exon7:c.C225T:p.F75F,Cntn4:NM_173004:exon7:c.C225T:p.F75F"	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.715149808	2	0.9841554	TCC	synonymous	NA	NA	NA	NA
M3	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	20	3	0.15	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.972089858	1	0.999151	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M3	chr6	108485320	12A2p6	cell line	sgMsh2	108485320	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	187	42	4	0.095238095	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon49:c.C6342T:p.N2114N	6qE1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.6766088	2	0.9968399	ACA	synonymous	NA	NA	NA	NA
M3	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	95	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.792231823	1	0.7800353	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr6	111495710	12A2p6	cell line	sgMsh2	111495710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	252	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.C2509T:p.L837L,Grm7:NM_177328:exon9:c.C2509T:p.L837L"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.882160841	1	0.9995507	GCT	synonymous	NA	NA	NA	NA
M3	chr6	112665281	12A2p6	cell line	sgMsh2	112665281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	201	60	9	0.15	exonic	Rad18	nonsynonymous SNV	"Rad18:NM_001167730:exon9:c.T1024C:p.Y342H,Rad18:NM_001381931:exon9:c.T1024C:p.Y342H,Rad18:NM_001381932:exon9:c.T1024C:p.Y342H,Rad18:NM_021385:exon9:c.T1024C:p.Y342H,Rad18:NM_001381933:exon10:c.T628C:p.Y210H"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.513880101	2	0.9906826	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	113137980	12A2p6	cell line	sgMsh2	113137980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	118	258	34	0.131782946	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.A2561C:p.K854T,Setd5:NM_028385:exon17:c.A2504C:p.K835T"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.462492091	2	0.7381206	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	113176608	12A2p6	cell line	sgMsh2	113176608	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.148	102	0	0	NA	exonic	Lhfpl4	frameshift deletion	Lhfpl4:NM_177763:exon3:c.481delG:p.A161Pfs*60	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr6	113315417	12A2p6	cell line	sgMsh2	113315417	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	72	61	2	0.032786885	exonic	Brpf1	frameshift deletion	"Brpf1:NM_001282126:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282127:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282128:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_030178:exon3:c.1423delA:p.S476Afs*17"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.689455803	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3	chr6	113339298	12A2p6	cell line	sgMsh2	113339298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	67	108	14	0.12962963	exonic	Camk1	nonsynonymous SNV	Camk1:NM_133926:exon5:c.A416G:p.H139R	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.552421109	2	0.9599894	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	114304017	12A2p6	cell line	sgMsh2	114304017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	116	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon6:c.C531T:p.Y177Y	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.518162436	2	0.9798795	ACA	synonymous	NA	NA	NA	NA
M3	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	178	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.715149808	2	0.96366	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	115801863	12A2p6	cell line	sgMsh2	115801863	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	186	5	0	0	exonic	Cand2	synonymous SNV	Cand2:NM_025958:exon14:c.C3387T:p.I1129I	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.72799681	2	0.9403868	TCA	synonymous	NA	NA	NA	NA
M3	chr6	115853161	12A2p6	cell line	sgMsh2	115853161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	138	11	0	0	exonic	Mbd4	nonsynonymous SNV	Mbd4:NM_010774:exon1:c.T50C:p.V17A	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.633785458	2	0.9964894	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	115949743	12A2p6	cell line	sgMsh2	115949743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	259	0	0	NA	exonic;splicing	H1f8;H1f8	nonsynonymous SNV	H1f8:NM_001346702:exon4:c.T728C:p.V243A	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.680891134	2	0.9997378	GTA	nonsynonymous	AGGT	12	AGGTAGGTAGGT	NA
M3	chr6	116314375	12A2p6	cell line	sgMsh2	116314375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	194	4	0	0	exonic	Zfand4	synonymous SNV	"Zfand4:NM_001290339:exon4:c.T588C:p.S196S,Zfand4:NM_001290338:exon6:c.T894C:p.S298S,Zfand4:NM_001309446:exon7:c.T1269C:p.S423S"	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.719432142	2	0.9695329	GTG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
M3	chr6	116540700	12A2p6	cell line	sgMsh2	116540700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	385	0	0	NA	exonic	Olfr213	synonymous SNV	Olfr213:NM_001011801:exon1:c.A246G:p.T82T	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.787949489	2	0.5726239	CAG	synonymous	NA	NA	NA	NA
M3	chr6	116695469	12A2p6	cell line	sgMsh2	116695469	T	-	Deletion	Strelka2;Vardict	2	0.127	63	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon5:c.410delA:p.K137Rfs*20	6qE3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.543856441	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3	chr6	118088258	12A2p6	cell line	sgMsh2	118088258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	212	16	2	0.125	exonic	Rasgef1a	nonsynonymous SNV	"Rasgef1a:NM_001316749:exon10:c.A1182C:p.K394N,Rasgef1a:NM_001362103:exon10:c.A1233C:p.K411N,Rasgef1a:NM_001362104:exon10:c.A1182C:p.K394N,Rasgef1a:NM_027526:exon10:c.A1206C:p.K402N,Rasgef1a:NM_001362105:exon11:c.A1215C:p.K405N"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.75797315	2	0.8027307	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	91	17	1	0.058823529	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.886443175	NA	NA	CGT	frameshift	NA	NA	NA	-1
M3	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	104	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.646632461	2	0.9691672	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M3	chr6	121387793	12A2p6	cell line	sgMsh2	121387793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	89	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon7:c.A1636G:p.N546D,Iqsec3:NM_001033354:exon8:c.A2536G:p.N846D"	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.603809119	2	0.9791514	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	121870583	12A2p6	cell line	sgMsh2	121870583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	219	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon16:c.G1919T:p.W640L	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.560985777	2	0.9999175	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr6	122063608	12A2p6	cell line	sgMsh2	122063608	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.15	197	0	0	NA	exonic	Mug2	frameshift insertion	Mug2:NM_008646:exon18:c.2117dupA:p.S709Ifs*2	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.642350127	NA	NA	GCA	frameshift	NA	NA	NA	1
M3	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	119	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.655197129	2	0.9794425	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr6	123124976	12A2p6	cell line	sgMsh2	123124976	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	251	0	0	NA	exonic	Clec4a2	nonsynonymous SNV	"Clec4a2:NM_001170333:exon2:c.G89T:p.R30I,Clec4a2:NM_011999:exon2:c.G89T:p.R30I,Clec4a2:NM_001170332:exon3:c.G89T:p.R30I"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.603809119	2	0.9999988	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr6	123331592	12A2p6	cell line	sgMsh2	123331592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	234	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon5:c.T1627C:p.F543L	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.638067793	2	0.9999694	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	123704621	12A2p6	cell line	sgMsh2	123704621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	351	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon2:c.A487T:p.I163F	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	1	0.6910802	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr6	123825293	12A2p6	cell line	sgMsh2	123825293	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	175	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon5:c.A1650C:p.P550P	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.775102486	1	0.512372	CTG	synonymous	NA	NA	NA	NA
M3	chr6	124061284	12A2p6	cell line	sgMsh2	124061284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	262	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon6:c.C1817T:p.A606V	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.796514157	1	0.7328405	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	79	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.972089858	1	0.9967255	GAT	synonymous	NA	NA	NA	NA
M3	chr6	124861299	12A2p6	cell line	sgMsh2	124861299	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	113	0	0	NA	exonic	Gpr162	synonymous SNV	"Gpr162:NM_013533:exon2:c.C387T:p.N129N,Gpr162:NM_001355257:exon3:c.C387T:p.N129N"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.753690815	2	9.64E-08	CGT	synonymous	NA	NA	NA	NA
M3	chr6	124964725	12A2p6	cell line	sgMsh2	124964725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	137	111	3	0.027027027	exonic	Cops7a	nonsynonymous SNV	"Cops7a:NM_001164089:exon2:c.A161G:p.E54G,Cops7a:NM_001355541:exon2:c.A161G:p.E54G,Cops7a:NM_001355542:exon2:c.A161G:p.E54G,Cops7a:NM_001379119:exon2:c.A161G:p.E54G,Cops7a:NM_001379120:exon2:c.A161G:p.E54G,Cops7a:NM_001379122:exon2:c.A161G:p.E54G,Cops7a:NM_001379123:exon2:c.A161G:p.E54G,Cops7a:NM_001379124:exon2:c.A161G:p.E54G,Cops7a:NM_001379125:exon2:c.A161G:p.E54G,Cops7a:NM_012003:exon2:c.A161G:p.E54G"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.723714476	2	0.8568313	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	125101957	12A2p6	cell line	sgMsh2	125101957	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	100	427	42	0.098360656	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon7:c.C854A:p.A285D,Chd4:NM_145979:exon7:c.C854A:p.A285D"	6qF2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.646632461	2	0.9627836	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	125604260	12A2p6	cell line	sgMsh2	125604260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	49	1	0	0	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon15:c.T1860C:p.D620D	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.865031504	1	0.9265894	ATT	synonymous	NA	NA	NA	NA
M3	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	266	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.745126147	2	0.9618667	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	114	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.91213718	1	0.9956137	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	138	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.826490496	1	0.9290783	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr6	128489128	12A2p6	cell line	sgMsh2	128489128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	90	3	0	0	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon29:c.A3588G:p.Q1196Q	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.595244451	2	0.9838837	GTT	synonymous	NA	NA	NA	NA
M3	chr6	129739153	12A2p6	cell line	sgMsh2	129739153	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	216	0	0	NA	exonic	Klri2	nonsynonymous SNV	Klri2:NM_177155:exon2:c.G222T:p.W74C	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.556703443	2	0.9998638	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr6	131685363	12A2p6	cell line	sgMsh2	131685363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	95	0	0	NA	exonic	Tas2r104	nonsynonymous SNV	Tas2r104:NM_207011:exon1:c.A382G:p.K128E	6qF3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	1	1	0.9993709	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr6	132855569	12A2p6	cell line	sgMsh2	132855569	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	262	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.G132A:p.V44V	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.702302805	2	0.9986752	TGG	synonymous	NA	NA	NA	NA
M3	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	210	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	1	1	0.9999994	GTG	synonymous	NA	NA	NA	NA
M3	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	50	11	0.22	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	0.959242856	1	0.9894363	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	196	178	29	0.162921348	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.740843813	2	0.09846018	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	135241314	12A2p6	cell line	sgMsh2	135241314	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.164	68	2	0	0	exonic	Gsg1	synonymous SNV	"Gsg1:NM_001080552:exon4:c.T583C:p.L195L,Gsg1:NM_001080553:exon4:c.T574C:p.L192L,Gsg1:NM_010352:exon5:c.T574C:p.L192L"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.702302805	2	0.6289182	AAC	synonymous	NA	NA	NA	NA
M3	chr6	135242186	12A2p6	cell line	sgMsh2	135242186	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	65	11	5	0.454545455	exonic	Gsg1	nonsynonymous SNV	"Gsg1:NM_001080552:exon3:c.C364T:p.P122S,Gsg1:NM_001080553:exon3:c.C355T:p.P119S,Gsg1:NM_010352:exon4:c.C355T:p.P119S"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.556703443	2	0.9539966	GGT	nonsynonymous	TGG	8	TGGTGGTG	NA
M3	chr6	135733866	12A2p6	cell line	sgMsh2	135733866	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	153	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon15:c.C2681T:p.T894I,Grin2b:NM_008171:exon15:c.C2681T:p.T894I"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.565268112	2	0.9994174	TGT	nonsynonymous	GT	8	GTGTGTGT	NA
M3	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	151	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.890725509	1	0.9965409	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr6	136587336	12A2p6	cell line	sgMsh2	136587336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	190	75	4	0.053333333	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon9:c.T2552C:p.I851T	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.800796491	1	0.806229	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	132	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.886443175	1	0.9931617	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.117	171	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.501033099	2	0.9661744	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M3	chr6	139843996	12A2p6	cell line	sgMsh2	139843996	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	104	3	1	0.333333333	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon2:c.G114T:p.K38N	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.890725509	1	0.9878891	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.732279145	2	0.7233203	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr6	142003391	12A2p6	cell line	sgMsh2	142003391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	168	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon2:c.T258C:p.P86P	6qG2	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.488186096	2	0.9157689	GAG	synonymous	NA	NA	NA	NA
M3	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	214	22	1	0.045454545	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M3	chr6	146224060	12A2p6	cell line	sgMsh2	146224060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	121	2	0	0	exonic	Itpr2	synonymous SNV	"Itpr2:NM_010586:exon44:c.T6192C:p.D2064D,Itpr2:NM_019923:exon45:c.T6291C:p.D2097D"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.659479463	2	0.9780276	CAT	synonymous	NA	NA	NA	NA
M3	chr6	148294561	12A2p6	cell line	sgMsh2	148294561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	174	0	0	NA	exonic	Tmtc1	nonsynonymous SNV	"Tmtc1:NM_001347518:exon10:c.A1552G:p.T518A,Tmtc1:NM_198967:exon10:c.A1552G:p.T518A"	6qG3	chr6-3373003-148425959	6	4	2	0.96	4.111040811	NA	1	0.877878507	1	0.9962766	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	254	6	1	0.166666667	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M3	chr6	149166910	12A2p6	cell line	sgMsh2	149166910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	54	8	0.148148148	exonic	Amn1	nonsynonymous SNV	"Amn1:NM_001113424:exon6:c.A599G:p.N200S,Amn1:NM_001356344:exon6:c.A470G:p.N157S,Amn1:NM_001381983:exon6:c.A575G:p.N192S"	6qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	182	117	24	0.205128205	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	4148627	12A2p6	cell line	sgMsh2	4148627	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	62	3	0	0	exonic	Leng9	nonsynonymous SNV	Leng9:NM_175529:exon1:c.T1049C:p.V350A	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9807502	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	4486401	12A2p6	cell line	sgMsh2	4486401	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	117	41	7	0.170731707	exonic	Ppp1r12c	nonsynonymous SNV	Ppp1r12c:NM_029834:exon6:c.A920G:p.D307G	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	4628730	12A2p6	cell line	sgMsh2	4628730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	38	2	0	0	exonic	Tmem86b	nonsynonymous SNV	Tmem86b:NM_023440:exon3:c.C322T:p.H108Y	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.8781432	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	4771071	12A2p6	cell line	sgMsh2	4771071	A	-	Deletion	Strelka2;Vardict	2	0.28	25	0	0	NA	exonic	Fam71e2	frameshift deletion	Fam71e2:NM_172895:exon1:c.41delT:p.F14Sfs*42	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M3	chr7	4933367	12A2p6	cell line	sgMsh2	4933367	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	72	0	0	NA	exonic	Ssc5d	synonymous SNV	Ssc5d:NM_173008:exon9:c.G1611A:p.T537T	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	CGG	synonymous	NA	NA	NA	NA
M3	chr7	5029759	12A2p6	cell line	sgMsh2	5029759	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	132	66	20	0.303030303	exonic	Zfp865	nonsynonymous SNV	"Zfp865:NM_001033383:exon2:c.T742C:p.Y248H,Zfp865:NM_001290426:exon2:c.T742C:p.Y248H"	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9996476	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr7	5410859	12A2p6	cell line	sgMsh2	5410859	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	451	0	0	NA	exonic	Vmn1r58	frameshift deletion	Vmn1r58:NM_030739:exon2:c.371delA:p.K124Rfs*2	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.886443175	NA	NA	CTT	frameshift	G	5	GGGGG	-1
M3	chr7	6060633	12A2p6	cell line	sgMsh2	6060633	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.209	196	0	0	NA	exonic	Nlrp4c	synonymous SNV	Nlrp4c:NM_031389:exon2:c.C39T:p.Y13Y	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9992007	ACT	synonymous	NA	NA	NA	NA
M3	chr7	6460719	12A2p6	cell line	sgMsh2	6460719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	223	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T209G:p.L70R	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999997	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	6570449	12A2p6	cell line	sgMsh2	6570449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	161	0	0	NA	exonic	Olfr1350	nonsynonymous SNV	Olfr1350:NM_146389:exon1:c.T457C:p.F153L	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999885	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	169	6	0	0	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9918659	CCC	synonymous	NA	NA	NA	NA
M3	chr7	7289108	12A2p6	cell line	sgMsh2	7289108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	86	43	15	0.348837209	exonic	Clcn4	nonsynonymous SNV	"Clcn4:NM_001357104:exon8:c.A1460G:p.Y487C,Clcn4:NM_001302386:exon9:c.A1523G:p.Y508C,Clcn4:NM_001357102:exon10:c.A1703G:p.Y568C,Clcn4:NM_001357103:exon11:c.A1703G:p.Y568C,Clcn4:NM_011334:exon11:c.A1703G:p.Y568C,Clcn4:NM_001302387:exon12:c.A1610G:p.Y537C"	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9977225	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	11009550	12A2p6	cell line	sgMsh2	11009550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	325	0	0	NA	exonic	Zscan4c	nonsynonymous SNV	Zscan4c:NM_001013765:exon4:c.T1075C:p.S359P	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.9867231	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	11847249	12A2p6	cell line	sgMsh2	11847249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	239	0	0	NA	exonic	Vmn1r74	nonsynonymous SNV	Vmn1r74:NM_134206:exon1:c.A475G:p.T159A	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9996732	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	13025408	12A2p6	cell line	sgMsh2	13025408	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	132	634	148	0.233438486	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon2:c.G448A:p.A150T	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999332	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr7	13306267	12A2p6	cell line	sgMsh2	13306267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	103	83	11	0.13253012	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon24:c.T2198C:p.I733T,Lig1:NM_001199310:exon24:c.T2198C:p.I733T,Lig1:NM_010715:exon24:c.T2198C:p.I733T"	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	14425549	12A2p6	cell line	sgMsh2	14425549	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	85	0	0	NA	exonic	Sult2a8	synonymous SNV	"Sult2a8:NM_001199306:exon3:c.C144T:p.H48H,Sult2a8:NM_175250:exon3:c.C144T:p.H48H"	7qA1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8658702	AGT	synonymous	NA	NA	NA	NA
M3	chr7	15397023	12A2p6	cell line	sgMsh2	15397023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	285	0	0	NA	exonic	Obox2	nonsynonymous SNV	Obox2:NM_145708:exon2:c.T179G:p.L60R	7qA2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.650914795	2	0.9999931	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	15945980	12A2p6	cell line	sgMsh2	15945980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	20	338	95	0.281065089	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T74C:p.L25P	7qA2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.873312	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	16079319	12A2p6	cell line	sgMsh2	16079319	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.143	42	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001099277:exon3:c.T1896C:p.T632T,Zfp541:NM_001347559:exon3:c.T1896C:p.T632T"	7qA2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.612373788	2	0.7017539	CTA	synonymous	NA	NA	NA	NA
M3	chr7	16083478	12A2p6	cell line	sgMsh2	16083478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	51	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001347559:exon6:c.T2847C:p.P949P,Zfp541:NM_001099277:exon8:c.T3030C:p.P1010P"	7qA2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9910065	CTA	synonymous	NA	NA	NA	NA
M3	chr7	16945364	12A2p6	cell line	sgMsh2	16945364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	82	0	0	NA	exonic	Pnmal2	nonsynonymous SNV	Pnmal2:NM_001099636:exon1:c.T272C:p.I91T	7qA2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr7	18482720	12A2p6	cell line	sgMsh2	18482720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	319	0	0	NA	exonic	Psg26	nonsynonymous SNV	Psg26:NM_001029893:exon2:c.T193C:p.F65L	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.79E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	18682651	12A2p6	cell line	sgMsh2	18682651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	272	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon3:c.A539G:p.E180G	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.47E-08	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	18794266	12A2p6	cell line	sgMsh2	18794266	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	336	0	0	NA	exonic	Psg19	frameshift deletion	Psg19:NM_011964:exon3:c.551delC:p.S184Cfs*7	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CGA	frameshift	NA	NA	NA	-1
M3	chr7	18818658	12A2p6	cell line	sgMsh2	18818658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	341	0	0	NA	exonic	Psg17	nonsynonymous SNV	Psg17:NM_007677:exon3:c.A691G:p.N231D	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.21E-09	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	19000570	12A2p6	cell line	sgMsh2	19000570	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	54	10	5	0.5	exonic	Mypop	nonsynonymous SNV	Mypop:NM_145579:exon3:c.G591T:p.K197N	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9924912	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	56	74	12	0.162162162	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9933432	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	19414281	12A2p6	cell line	sgMsh2	19414281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	70	0	0	NA	exonic	Ckm	synonymous SNV	Ckm:NM_007710:exon2:c.A144G:p.P48P	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9971411	CAT	synonymous	NA	NA	NA	NA
M3	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	96	213	43	0.201877934	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994079	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	19918786	12A2p6	cell line	sgMsh2	19918786	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	112	64	13	0.203125	exonic	Pvr	nonsynonymous SNV	Pvr:NM_027514:exon2:c.A203C:p.K68T	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997755	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.16	161	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.685173469	2	0.9866624	CAG	synonymous	NA	NA	NA	NA
M3	chr7	23435850	12A2p6	cell line	sgMsh2	23435850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	154	0	0	NA	exonic	Nlrp5	nonsynonymous SNV	"Nlrp5:NM_001039143:exon13:c.G2917T:p.G973C,Nlrp5:NM_001305857:exon13:c.G2965T:p.G989C,Nlrp5:NM_011860:exon14:c.G2965T:p.G989C"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999824	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	24433386	12A2p6	cell line	sgMsh2	24433386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	53	0	0	NA	exonic	Irgc1	nonsynonymous SNV	"Irgc1:NM_001358033:exon2:c.C5T:p.A2V,Irgc1:NM_001358034:exon2:c.C5T:p.A2V,Irgc1:NM_199013:exon3:c.C5T:p.A2V"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8453334	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr7	24566482	12A2p6	cell line	sgMsh2	24566482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	108	72	17	0.236111111	exonic	Xrcc1	nonsynonymous SNV	"Xrcc1:NM_001360169:exon5:c.A304G:p.I102V,Xrcc1:NM_001360168:exon7:c.A586G:p.I196V,Xrcc1:NM_009532:exon7:c.A589G:p.I197V"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9946435	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	24758344	12A2p6	cell line	sgMsh2	24758344	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	39	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon4:c.T488G:p.L163R	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9205355	GAG	nonsynonymous	CCTGAG	12	CCTGAGCCTGAG	NA
M3	chr7	24989809	12A2p6	cell line	sgMsh2	24989809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	69	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.T1786C:p.C596R,Atp1a3:NM_001374627:exon13:c.T1825C:p.C609R"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	73	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	CGC	synonymous	C	5	CCCCC	NA
M3	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	40	30	6	0.2	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9826236	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	25329953	12A2p6	cell line	sgMsh2	25329953	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	33	21	4	0.19047619	exonic	Megf8	synonymous SNV	Megf8:NM_001160400:exon6:c.G921A:p.V307V	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.973675	TGT	synonymous	NA	NA	NA	NA
M3	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	27	130	43	0.330769231	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9625481	AGG	synonymous	NA	NA	NA	NA
M3	chr7	25669416	12A2p6	cell line	sgMsh2	25669416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	70	1	1	1	exonic	Tmem91	nonsynonymous SNV	Tmem91:NM_177102:exon4:c.T443C:p.V148A	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8490421	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	26199170	12A2p6	cell line	sgMsh2	26199170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	239	0	0	NA	exonic	Cyp2b9	nonsynonymous SNV	Cyp2b9:NM_010000:exon6:c.T949C:p.Y317H	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	GTA	nonsynonymous	C	5	CCCCC	NA
M3	chr7	26814787	12A2p6	cell line	sgMsh2	26814787	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	95	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon5:c.A817C:p.I273L	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	27032542	12A2p6	cell line	sgMsh2	27032542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	170	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.T707C:p.I236T	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999933	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr7	27434265	12A2p6	cell line	sgMsh2	27434265	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	64	0	0	NA	exonic	Sptbn4	nonsynonymous SNV	Sptbn4:NM_032610:exon3:c.G265T:p.D89Y	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9706053	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	27542090	12A2p6	cell line	sgMsh2	27542090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.149	43	83	1	0.012048193	exonic	Pld3	nonsynonymous SNV	"Pld3:NM_001317355:exon4:c.A26G:p.E9G,Pld3:NM_011116:exon4:c.A26G:p.E9G"	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.638067793	2	0.6424784	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	27673917	12A2p6	cell line	sgMsh2	27673917	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	12	18	2	0.111111111	exonic	Map3k10	synonymous SNV	Map3k10:NM_001290528:exon1:c.C108T:p.T36T	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9113752	GGG	synonymous	NA	NA	NA	NA
M3	chr7	28178283	12A2p6	cell line	sgMsh2	28178283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	120	8	1	0.125	exonic	Fbl	nonsynonymous SNV	Fbl:NM_007991:exon7:c.T779C:p.L260P	7qA3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	28396318	12A2p6	cell line	sgMsh2	28396318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	207	94	27	0.287234043	exonic	Paf1	nonsynonymous SNV	Paf1:NM_019458:exon9:c.A671G:p.D224G	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999993	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	22	1	0	0	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9499239	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	29377591	12A2p6	cell line	sgMsh2	29377591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	77	20	0.25974026	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon10:c.A2755G:p.T919A	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9969629	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	29386096	12A2p6	cell line	sgMsh2	29386096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	137	141	35	0.24822695	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon8:c.T2075C:p.V692A	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9998392	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	29845231	12A2p6	cell line	sgMsh2	29845231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	231	13	1	0.076923077	exonic	Zfp940	nonsynonymous SNV	Zfp940:NM_173738:exon5:c.T1250C:p.V417A	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	30245292	12A2p6	cell line	sgMsh2	30245292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	37	6	1	0.166666667	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon22:c.A2734G:p.S912G	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9792282	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	30591222	12A2p6	cell line	sgMsh2	30591222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	51	0	0	NA	exonic	Zbtb32	nonsynonymous SNV	Zbtb32:NM_021397:exon2:c.T647C:p.L216P	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9910065	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	30870419	12A2p6	cell line	sgMsh2	30870419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon7:c.T1497C:p.D499D,Cd22:NM_001043317:exon9:c.T1497C:p.D499D"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	AAT	synonymous	NA	NA	NA	NA
M3	chr7	30922543	12A2p6	cell line	sgMsh2	30922543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	255	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.A217G:p.N73D	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.972089858	1	0.9999997	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	30958277	12A2p6	cell line	sgMsh2	30958277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	106	349	74	0.212034384	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon7:c.A1257G:p.P419P,Lsr:NM_001164184:exon8:c.A1404G:p.P468P,Lsr:NM_017405:exon9:c.A1461G:p.P487P"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999677	GTG	synonymous	NA	NA	NA	NA
M3	chr7	30958754	12A2p6	cell line	sgMsh2	30958754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	132	331	85	0.256797583	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon6:c.A909G:p.E303E,Lsr:NM_001164184:exon7:c.A1056G:p.E352E,Lsr:NM_017405:exon8:c.A1113G:p.E371E"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9998249	GTT	synonymous	NA	NA	NA	NA
M3	chr7	31099035	12A2p6	cell line	sgMsh2	31099035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	65	0	0	NA	exonic	Hpn	stoploss	"Hpn:NM_001276269:exon13:c.A1338C:p.X446C,Hpn:NM_008281:exon13:c.A1251C:p.X417C,Hpn:NM_001110252:exon14:c.A1311C:p.X437C"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.826490496	1	0.8872604	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	214	57	8	0.140350877	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.706585139	2	0.9921012	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	212	88	8	0.090909091	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.839337499	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr7	35203672	12A2p6	cell line	sgMsh2	35203672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	64	3	1	0.333333333	exonic	Lrp3	synonymous SNV	Lrp3:NM_001024707:exon6:c.A1248G:p.Q416Q	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	GTT	synonymous	NA	NA	NA	NA
M3	chr7	35281419	12A2p6	cell line	sgMsh2	35281419	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	23	22	4	0.181818182	exonic	Gpatch1	frameshift deletion	Gpatch1:NM_026181:exon19:c.2675delA:p.N892Ifs*27	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.154	29	12	2	0.166666667	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.659479463	1	0.5751608	ATA	synonymous	NA	NA	NA	NA
M3	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	82	32	7	0.21875	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	36768908	12A2p6	cell line	sgMsh2	36768908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	23	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.G321A:p.E107E	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9527374	AGG	synonymous	NA	NA	NA	NA
M3	chr7	36770154	12A2p6	cell line	sgMsh2	36770154	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	50	0	0	NA	exonic	Tshz3	nonsynonymous SNV	Tshz3:NM_172298:exon2:c.C1567A:p.L523I	7qB2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.8900019	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	38267472	12A2p6	cell line	sgMsh2	38267472	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	36	79	28	0.35443038	exonic	Pop4	nonsynonymous SNV	Pop4:NM_025390:exon3:c.A184T:p.T62S	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.376845408	2	0.623288	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	41872661	12A2p6	cell line	sgMsh2	41872661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	108	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon1:c.A10G:p.I4V	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.685173469	2	0.9134977	ATC	nonsynonymous	A	5	AAAAA	NA
M3	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	351	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.11E-09	TAC	synonymous	NA	NA	NA	NA
M3	chr7	43586411	12A2p6	cell line	sgMsh2	43586411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	113	18	7	0.388888889	exonic	Zfp719	nonsynonymous SNV	"Zfp719:NM_001357769:exon3:c.C196A:p.L66M,Zfp719:NM_172482:exon3:c.C196A:p.L66M"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	43796133	12A2p6	cell line	sgMsh2	43796133	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	84	0	0	NA	exonic	Klk9	frameshift deletion	Klk9:NM_028660:exon5:c.746delA:p.N251delinsTEFMLRWTDWRGRRM	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.762255484	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	66	47	14	0.29787234	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	44582513	12A2p6	cell line	sgMsh2	44582513	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	34	2	0	0	exonic	Napsa	frameshift deletion	Napsa:NM_008437:exon5:c.625delA:p.K209Nfs*21	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr7	44973860	12A2p6	cell line	sgMsh2	44973860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	65	4	4	1	exonic	Cpt1c	nonsynonymous SNV	"Cpt1c:NM_001252470:exon2:c.A8G:p.E3G,Cpt1c:NM_001357670:exon2:c.A8G:p.E3G,Cpt1c:NM_153679:exon2:c.A8G:p.E3G"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7689049	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	45091511	12A2p6	cell line	sgMsh2	45091511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	60	21	4	0.19047619	exonic	Rcn3	nonsynonymous SNV	"Rcn3:NM_001355045:exon2:c.G172T:p.A58S,Rcn3:NM_026555:exon2:c.G172T:p.A58S"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9947696	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr7	45147281	12A2p6	cell line	sgMsh2	45147281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	49	46	10	0.217391304	exonic	Aldh16a1	nonsynonymous SNV	Aldh16a1:NM_145954:exon7:c.A793G:p.R265G	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	CTG	nonsynonymous	CCTG	9	CCTGCCTGC	NA
M3	chr7	45168825	12A2p6	cell line	sgMsh2	45168825	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	64	1	1	1	exonic	Slc17a7	nonsynonymous SNV	Slc17a7:NM_182993:exon2:c.G173A:p.G58D	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	GGC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M3	chr7	45194020	12A2p6	cell line	sgMsh2	45194020	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	27	0	0	NA	exonic	Kash5	nonsynonymous SNV	Kash5:NM_201374:exon7:c.C779T:p.A260V	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9591628	CGC	nonsynonymous	CCT	8	CCTCCTCC	NA
M3	chr7	45327334	12A2p6	cell line	sgMsh2	45327334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	40	4	1	0.25	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon4:c.T389C:p.V130A	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9729819	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	8	2	0.25	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9792282	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	46195657	12A2p6	cell line	sgMsh2	46195657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	66	0	0	NA	exonic	Ush1c	stoploss	Ush1c:NM_153677:exon27:c.A2733C:p.X911C	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9610758	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	46310014	12A2p6	cell line	sgMsh2	46310014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	115	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon56:c.T8581C:p.Y2861H	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.715149808	2	0.8246371	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	46378336	12A2p6	cell line	sgMsh2	46378336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	37	0	0	NA	exonic	Myod1	nonsynonymous SNV	Myod1:NM_010866:exon3:c.A899G:p.D300G	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.75797315	1	0.7469346	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	46427454	12A2p6	cell line	sgMsh2	46427454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	105	0	0	NA	exonic	Kcnc1	nonsynonymous SNV	"Kcnc1:NM_001112739:exon2:c.G679A:p.V227I,Kcnc1:NM_008421:exon2:c.G679A:p.V227I"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	CGT	nonsynonymous	NA	NA	NA	NA
M3	chr7	46662078	12A2p6	cell line	sgMsh2	46662078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	46	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T239C:p.F80S,Tph1:NM_001276372:exon3:c.T239C:p.F80S,Tph1:NM_009414:exon3:c.T239C:p.F80S"	7qB3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9878595	GAA	nonsynonymous	G	5	GGGGG	NA
M3	chr7	48552267	12A2p6	cell line	sgMsh2	48552267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	127	0	0	NA	exonic	Mrgprb2	synonymous SNV	Mrgprb2:NM_175531:exon2:c.T709C:p.L237L	7qB4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9992582	AAG	synonymous	NA	NA	NA	NA
M3	chr7	48867125	12A2p6	cell line	sgMsh2	48867125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	121	34	11	0.323529412	exonic	E2f8	synonymous SNV	"E2f8:NM_001013368:exon13:c.T2505C:p.D835D,E2f8:NM_001360812:exon13:c.T2505C:p.D835D"	7qB4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9978496	CAT	synonymous	NA	NA	NA	NA
M3	chr7	49556971	12A2p6	cell line	sgMsh2	49556971	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	41	13	5	0.384615385	exonic	Nav2	nonsynonymous SNV	"Nav2:NM_175272:exon18:c.T4543G:p.S1515A,Nav2:NM_001111016:exon19:c.T4360G:p.S1454A"	7qB4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9586905	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	56135305	12A2p6	cell line	sgMsh2	56135305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	225	26	5	0.192307692	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon29:c.C4390T:p.L1464F,Herc2:NM_010418:exon29:c.C4390T:p.L1464F"	7qB5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9999995	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr7	56734976	12A2p6	cell line	sgMsh2	56734976	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	62	0	0	NA	exonic	Gabrg3	frameshift deletion	Gabrg3:NM_008074:exon7:c.836delA:p.K279Rfs*9	7qB5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr7	59275864	12A2p6	cell line	sgMsh2	59275864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	73	129	34	0.263565891	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.T389C:p.I130T,Ube3a:NM_011668:exon6:c.T452C:p.I151T"	7qB5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9563018	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr7	59286057	12A2p6	cell line	sgMsh2	59286057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	60	121	34	0.280991736	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon6:c.T1688G:p.M563R,Ube3a:NM_011668:exon8:c.T1751G:p.M584R"	7qB5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9947696	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr7	62377423	12A2p6	cell line	sgMsh2	62377423	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	31	0	0	NA	exonic	Magel2	nonsynonymous SNV	Magel2:NM_013779:exon1:c.C74T:p.P25L	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	63099351	12A2p6	cell line	sgMsh2	63099351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	71	0	0	NA	exonic	Chrna7	nonsynonymous SNV	Chrna7:NM_007390:exon10:c.A1382G:p.K461R	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.672326466	2	0.7823304	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	64318302	12A2p6	cell line	sgMsh2	64318302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	98	90	15	0.166666667	exonic	Mtmr10	nonsynonymous SNV	Mtmr10:NM_172742:exon9:c.T878C:p.M293T	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994755	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr7	65329716	12A2p6	cell line	sgMsh2	65329716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	76	257	46	0.178988327	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon9:c.A1060G:p.T354A,Tjp1:NM_009386:exon9:c.A1060G:p.T354A"	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	66125637	12A2p6	cell line	sgMsh2	66125637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	122	81	20	0.24691358	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon2:c.T713C:p.I238T	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998776	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	67733299	12A2p6	cell line	sgMsh2	67733299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	69	2	0	0	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.T4614C:p.D1538D,Synm:NM_207663:exon5:c.T3708C:p.D1236D"	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	CAT	synonymous	NA	NA	NA	NA
M3	chr7	68304559	12A2p6	cell line	sgMsh2	68304559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	17	0	0	NA	exonic	Fam169b	nonsynonymous SNV	"Fam169b:NM_001013811:exon3:c.T155C:p.L52P,Fam169b:NM_001374636:exon3:c.T170C:p.L57P"	7qC	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9332787	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	75570003	12A2p6	cell line	sgMsh2	75570003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	168	28	8	0.285714286	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon3:c.T153C:p.S51S	7qD1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999925	GTT	synonymous	NA	NA	NA	NA
M3	chr7	76420271	12A2p6	cell line	sgMsh2	76420271	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	126	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon11:c.C1550A:p.A517D	7qD1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	76420375	12A2p6	cell line	sgMsh2	76420375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	77	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon11:c.G1654A:p.G552R	7qD1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.787949489	1	8.53E-07	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	76425893	12A2p6	cell line	sgMsh2	76425893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	118	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon15:c.T2038C:p.W680R	7qD1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	CTG	nonsynonymous	CCTG	8	CCTGCCTG	NA
M3	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	105	13	3	0.230769231	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996569	CAG	synonymous	AGA	8	AGAAGAAG	NA
M3	chr7	79098860	12A2p6	cell line	sgMsh2	79098860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	90	14	2	0.142857143	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon12:c.T3378C:p.D1126D,Acan:NM_007424:exon12:c.T3378C:p.D1126D"	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991482	ATG	synonymous	NA	NA	NA	NA
M3	chr7	79381782	12A2p6	cell line	sgMsh2	79381782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	49	0	0	NA	exonic	Rlbp1	nonsynonymous SNV	"Rlbp1:NM_001173483:exon5:c.T197A:p.L66Q,Rlbp1:NM_001357450:exon5:c.T197A:p.L66Q,Rlbp1:NM_020599:exon5:c.T197A:p.L66Q"	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	79693990	12A2p6	cell line	sgMsh2	79693990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	9	2	0.222222222	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A3602G:p.D1201G	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	79920545	12A2p6	cell line	sgMsh2	79920545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	39	165	43	0.260606061	exonic	Ap3s2	synonymous SNV	Ap3s2:NM_009682:exon1:c.T33C:p.H11H	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9686648	CAT	synonymous	NA	NA	NA	NA
M3	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	21	32	9	0.28125	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9469504	GCC	synonymous	NA	NA	NA	NA
M3	chr7	80325665	12A2p6	cell line	sgMsh2	80325665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	65	70	17	0.242857143	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon20:c.A2790G:p.K930K	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.8115962	CTT	synonymous	NA	NA	NA	NA
M3	chr7	80391040	12A2p6	cell line	sgMsh2	80391040	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	42	57	14	0.245614035	exonic	Furin	synonymous SNV	"Furin:NM_001081454:exon16:c.G2049A:p.R683R,Furin:NM_011046:exon16:c.G2049A:p.R683R"	7qD2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.715149808	1	0.6117647	CCC	synonymous	NA	NA	NA	NA
M3	chr7	80620550	12A2p6	cell line	sgMsh2	80620550	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	99	23	2	0.086956522	exonic	Crtc3	nonsynonymous SNV	Crtc3:NM_173863:exon4:c.T385G:p.S129A	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9994717	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr7	80717097	12A2p6	cell line	sgMsh2	80717097	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	124	418	127	0.303827751	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon37:c.A4774T:p.I1592F	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	80736380	12A2p6	cell line	sgMsh2	80736380	T	-	Deletion	Strelka2;Vardict	2	0.3043	69	473	25	0.052854123	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon24:c.2822delA:p.N941Ifs*7	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M3	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	30	26	4	0.153846154	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9685855	CAT	synonymous	NA	NA	NA	NA
M3	chr7	83982317	12A2p6	cell line	sgMsh2	83982317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	48	3	1	0.333333333	exonic	Cemip	nonsynonymous SNV	Cemip:NM_030728:exon11:c.A1286G:p.N429S	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	84856814	12A2p6	cell line	sgMsh2	84856814	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	375	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T450G:p.T150T	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.03E-09	CTT	synonymous	NA	NA	NA	NA
M3	chr7	84916353	12A2p6	cell line	sgMsh2	84916353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	315	0	0	NA	exonic	Olfr290	synonymous SNV	Olfr290:NM_146416:exon1:c.T573C:p.S191S	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M3	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	135	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9998508	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	85750671	12A2p6	cell line	sgMsh2	85750671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	349	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.T1154C:p.M385T	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	1.41E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	85958038	12A2p6	cell line	sgMsh2	85958038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	155	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A476G:p.E159G	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999835	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	85958137	12A2p6	cell line	sgMsh2	85958137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	145	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A377G:p.Y126C	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9998113	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	86225371	12A2p6	cell line	sgMsh2	86225371	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	134	0	0	NA	exonic	Vmn2r76	stopgain	Vmn2r76:NM_001384930:exon6:c.T2388G:p.Y796X	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9992229	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	121	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9995662	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	86321354	12A2p6	cell line	sgMsh2	86321354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	128	0	0	NA	exonic	Olfr308	synonymous SNV	Olfr308:NM_146621:exon1:c.T597G:p.A199A	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.987478	AAG	synonymous	NA	NA	NA	NA
M3	chr7	86335714	12A2p6	cell line	sgMsh2	86335714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	284	0	0	NA	exonic	Olfr307	synonymous SNV	Olfr307:NM_146617:exon1:c.T681G:p.P227P	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	7.63E-09	TAG	synonymous	NA	NA	NA	NA
M3	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	237	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.9728157	CTG	synonymous	NA	NA	NA	NA
M3	chr7	86585643	12A2p6	cell line	sgMsh2	86585643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	298	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.G367A:p.A123T	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9999937	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.354	131	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M3	chr7	86761817	12A2p6	cell line	sgMsh2	86761817	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	82	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon6:c.C716A:p.P239H,Folh1:NM_016770:exon6:c.C716A:p.P239H"	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	241	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	TGT	nonsynonymous	NA	NA	NA	NA
M3	chr7	86915528	12A2p6	cell line	sgMsh2	86915528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	126	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon1:c.T180C:p.S60S	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9992248	GTG	synonymous	NA	NA	NA	NA
M3	chr7	86922390	12A2p6	cell line	sgMsh2	86922390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	143	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon4:c.C1407T:p.H469H	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999026	ACG	synonymous	NA	NA	NA	NA
M3	chr7	87323934	12A2p6	cell line	sgMsh2	87323934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	91	0	0	NA	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285833:exon11:c.A791G:p.Y264C,Nox4:NM_001285835:exon11:c.A791G:p.Y264C,Nox4:NM_015760:exon11:c.A1013G:p.Y338C"	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	87492808	12A2p6	cell line	sgMsh2	87492808	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	101	0	0	NA	exonic	Tyr	stopgain	"Tyr:NM_001317397:exon1:c.C543A:p.Y181X,Tyr:NM_011661:exon1:c.C543A:p.Y181X"	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.719432142	2	0.7369014	AGT	nonsynonymous	NA	NA	NA	NA
M3	chr7	88116222	12A2p6	cell line	sgMsh2	88116222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	44	0	0	NA	exonic	Grm5	nonsynonymous SNV	Grm5:NM_001143834:exon10:c.A2657G:p.K886R	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9863153	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	90160587	12A2p6	cell line	sgMsh2	90160587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	86	304	87	0.286184211	exonic	Picalm	synonymous SNV	"Picalm:NM_001252520:exon2:c.T270C:p.N90N,Picalm:NM_001252521:exon2:c.T270C:p.N90N,Picalm:NM_001252522:exon2:c.T270C:p.N90N,Picalm:NM_001252523:exon2:c.T270C:p.N90N,Picalm:NM_001252524:exon2:c.T270C:p.N90N,Picalm:NM_001360867:exon2:c.T270C:p.N90N,Picalm:NM_146194:exon2:c.T270C:p.N90N"	7qD3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.792231823	1	0.7855675	ATG	synonymous	NA	NA	NA	NA
M3	chr7	97223703	12A2p6	cell line	sgMsh2	97223703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	72	32	8	0.25	exonic	Gab2	nonsynonymous SNV	"Gab2:NM_001162477:exon2:c.G312T:p.E104D,Gab2:NM_010248:exon2:c.G312T:p.E104D"	7qE1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9743621	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	97662217	12A2p6	cell line	sgMsh2	97662217	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	75	111	14	0.126126126	exonic	Rsf1	nonsynonymous SNV	Rsf1:NM_001081267:exon6:c.A2153T:p.N718I	7qE1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.719432142	2	0.5867262	AAC	nonsynonymous	GAAA	8	GAAAGAAA	NA
M3	chr7	98352506	12A2p6	cell line	sgMsh2	98352506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	55	11	4	0.363636364	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.T617C:p.L206P,Tsku:NM_001168539:exon2:c.T617C:p.L206P,Tsku:NM_001168540:exon3:c.T617C:p.L206P,Tsku:NM_001168541:exon4:c.T617C:p.L206P"	7qE1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9929299	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	98645172	12A2p6	cell line	sgMsh2	98645172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	61	21	4	0.19047619	exonic	Emsy	synonymous SNV	"Emsy:NM_001381869:exon5:c.T282C:p.S94S,Emsy:NM_172280:exon5:c.T282C:p.S94S"	7qE1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9829592	AAC	synonymous	NA	NA	NA	NA
M3	chr7	100649991	12A2p6	cell line	sgMsh2	100649991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	76	5	2	0.4	exonic	Plekhb1	synonymous SNV	"Plekhb1:NM_001163186:exon5:c.T375C:p.V125V,Plekhb1:NM_001163183:exon6:c.T375C:p.V125V,Plekhb1:NM_013746:exon7:c.T432C:p.V144V"	7qE2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.994289	AAA	synonymous	NA	NA	NA	NA
M3	chr7	101580262	12A2p6	cell line	sgMsh2	101580262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	208	0	0	NA	exonic	Art2b	synonymous SNV	Art2b:NM_019915:exon2:c.A429G:p.L143L	7qE2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999992	CTA	synonymous	TAAAC	12	TAAACTAAACTA	NA
M3	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	69	130	29	0.223076923	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9969629	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	110	204	46	0.225490196	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	104	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	102709503	12A2p6	cell line	sgMsh2	102709503	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	200	0	0	NA	exonic	Olfr558	frameshift deletion	Olfr558:NM_147093:exon2:c.243delA:p.M83fs*0	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr7	102877647	12A2p6	cell line	sgMsh2	102877647	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.258	174	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T526G:p.S176A	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999948	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	102877650	12A2p6	cell line	sgMsh2	102877650	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.258	173	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T529C:p.Y177H	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999944	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr7	103155345	12A2p6	cell line	sgMsh2	103155345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	153	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A401G:p.Y134C	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999813	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	103320651	12A2p6	cell line	sgMsh2	103320651	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	254	0	0	NA	exonic	Olfr597	frameshift deletion	Olfr597:NM_001011845:exon1:c.239delC:p.M83Cfs*17	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M3	chr7	103418304	12A2p6	cell line	sgMsh2	103418304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	364	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.A805G:p.S269G	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	1.44E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	103470347	12A2p6	cell line	sgMsh2	103470347	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	185	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T307A:p.Y103N	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999973	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	103470351	12A2p6	cell line	sgMsh2	103470351	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	183	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T311G:p.F104C	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999997	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	103506420	12A2p6	cell line	sgMsh2	103506420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.199	171	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T525C:p.A175A	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.852184501	1	0.9846605	GAG	synonymous	NA	NA	NA	NA
M3	chr7	103561109	12A2p6	cell line	sgMsh2	103561109	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	exonic	Olfr615	nonsynonymous SNV	Olfr615:NM_147080:exon1:c.G631A:p.D211N	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9997231	GGA	nonsynonymous	T	5	TTTTT	NA
M3	chr7	103716707	12A2p6	cell line	sgMsh2	103716707	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	222	0	0	NA	exonic	Olfr243	nonsynonymous SNV	Olfr243:NM_001025386:exon1:c.A112C:p.I38L	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.990331	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	104084873	12A2p6	cell line	sgMsh2	104084873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	167	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.C206T:p.S69F	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999992	AGA	nonsynonymous	ACAG	8	ACAGACAG	NA
M3	chr7	104128876	12A2p6	cell line	sgMsh2	104128876	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	0	0	NA	exonic	Ubqln5	nonsynonymous SNV	Ubqln5:NM_027634:exon1:c.G740A:p.G247D	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9499883	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr7	104274785	12A2p6	cell line	sgMsh2	104274785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	49	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon5:c.A758G:p.N253S	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9898585	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	104329644	12A2p6	cell line	sgMsh2	104329644	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	92	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon1:c.C97A:p.L33I	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9992455	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	104472252	12A2p6	cell line	sgMsh2	104472252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	239	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon7:c.A835G:p.S279G,Trim30d:NM_199146:exon8:c.A1285G:p.S429G"	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	136	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999476	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr7	104579774	12A2p6	cell line	sgMsh2	104579774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	177	0	0	NA	exonic	Olfr653	nonsynonymous SNV	Olfr653:NM_147074:exon1:c.C127A:p.L43I	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999956	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	186	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9977849	TCC	synonymous	NA	NA	NA	NA
M3	chr7	104859419	12A2p6	cell line	sgMsh2	104859419	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	267	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon2:c.A27C:p.E9D	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	1.96E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	105143658	12A2p6	cell line	sgMsh2	105143658	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	149	0	0	NA	exonic	Olfr683	nonsynonymous SNV	Olfr683:NM_147045:exon1:c.G652A:p.D218N	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999762	TCA	nonsynonymous	NA	NA	NA	NA
M3	chr7	105368670	12A2p6	cell line	sgMsh2	105368670	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	135	0	0	NA	exonic	Olfr692	nonsynonymous SNV	Olfr692:NM_146355:exon1:c.A343C:p.M115L	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.9147352	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	75	55	2	0.036363636	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3	chr7	106602355	12A2p6	cell line	sgMsh2	106602355	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.211	166	0	0	NA	exonic	Gm1966	nonsynonymous SNV	"Gm1966:NM_001277179:exon3:c.T1681C:p.Y561H,Gm1966:NM_001277180:exon3:c.T1681C:p.Y561H,Gm1966:NM_001277181:exon4:c.T1681C:p.Y561H,Gm1966:NM_001277182:exon4:c.T1681C:p.Y561H,Gm1966:NM_001277183:exon6:c.T1681C:p.Y561H"	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9988016	TAA	nonsynonymous	T	5	TTTTT	NA
M3	chr7	106753224	12A2p6	cell line	sgMsh2	106753224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	189	0	0	NA	exonic	Olfr698	nonsynonymous SNV	Olfr698:NM_146602:exon1:c.C163T:p.L55F	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.967807524	1	0.9999862	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr7	106886521	12A2p6	cell line	sgMsh2	106886521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	186	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.C295A:p.L99I	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999975	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	106944593	12A2p6	cell line	sgMsh2	106944593	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	180	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T407A:p.M136K	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999964	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	147	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999731	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107147393	12A2p6	cell line	sgMsh2	107147393	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	82	0	0	NA	exonic	Olfr716	nonsynonymous SNV	Olfr716:NM_146604:exon1:c.C76A:p.L26I	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107744242	12A2p6	cell line	sgMsh2	107744242	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	55	65	18	0.276923077	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon21:c.T2037G:p.D679E,Ppfibp2:NM_001357437:exon22:c.T2256G:p.D752E,Ppfibp2:NM_001357436:exon23:c.T2289G:p.D763E,Ppfibp2:NM_001163557:exon24:c.T2487G:p.D829E,Ppfibp2:NM_008905:exon25:c.T2520G:p.D840E"	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.839337499	1	0.09869573	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107845192	12A2p6	cell line	sgMsh2	107845192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	245	0	0	NA	exonic	Olfr470	stopgain	Olfr470:NM_146425:exon1:c.T540A:p.Y180X	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107933840	12A2p6	cell line	sgMsh2	107933840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	307	0	0	NA	exonic	Olfr473	nonsynonymous SNV	Olfr473:NM_146775:exon1:c.T319G:p.F107V	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	2.64E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	107990375	12A2p6	cell line	sgMsh2	107990375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	126	0	0	NA	exonic	Olfr477	synonymous SNV	Olfr477:NM_146926:exon1:c.T9C:p.A3A	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9786248	CTC	synonymous	NA	NA	NA	NA
M3	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	184	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9921808	ATG	nonsynonymous	G	5	GGGGG	NA
M3	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	144	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9983885	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	108159767	12A2p6	cell line	sgMsh2	108159767	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	327	0	0	NA	exonic	Olfr485	synonymous SNV	Olfr485:NM_001011810:exon1:c.C105T:p.S35S	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9999994	TGC	synonymous	NA	NA	NA	NA
M3	chr7	108159777	12A2p6	cell line	sgMsh2	108159777	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	320	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T95C:p.I32T	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.942113519	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	108544593	12A2p6	cell line	sgMsh2	108544593	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	189	0	0	NA	exonic	Olfr503	nonsynonymous SNV	Olfr503:NM_001011527:exon1:c.G67T:p.G23C	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.9357328	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	108564891	12A2p6	cell line	sgMsh2	108564891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	312	0	0	NA	exonic	Olfr504	synonymous SNV	Olfr504:NM_001011858:exon1:c.A903G:p.R301R	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	2.21E-09	GTC	synonymous	NA	NA	NA	NA
M3	chr7	108622747	12A2p6	cell line	sgMsh2	108622747	A	-	Deletion	Strelka2;Vardict	2	0.2105	152	0	0	NA	exonic	Olfr507	frameshift deletion	Olfr507:NM_146743:exon1:c.934delA:p.T314Hfs*3	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.901431345	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.26	294	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	4.61E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	108845941	12A2p6	cell line	sgMsh2	108845941	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	190	0	0	NA	exonic	Olfr516	nonsynonymous SNV	Olfr516:NM_146725:exon1:c.T68G:p.L23R	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.999998	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	109477730	12A2p6	cell line	sgMsh2	109477730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	48	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon8:c.T1001C:p.L334P,Trim66:NM_001170913:exon8:c.T695C:p.L232P,Trim66:NM_181853:exon8:c.T695C:p.L232P"	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	109483656	12A2p6	cell line	sgMsh2	109483656	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	40	1	0	0	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon4:c.T578C:p.V193A,Trim66:NM_001170913:exon4:c.T272C:p.V91A,Trim66:NM_181853:exon4:c.T272C:p.V91A"	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.475339094	2	0.8287682	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	110130973	12A2p6	cell line	sgMsh2	110130973	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	148	18	4	0.222222222	exonic	Wee1	nonsynonymous SNV	Wee1:NM_009516:exon6:c.C1283A:p.P428H	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999747	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	110265927	12A2p6	cell line	sgMsh2	110265927	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	97	62	18	0.290322581	exonic	Swap70	nonsynonymous SNV	Swap70:NM_009302:exon5:c.A734C:p.E245A	7qE3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9812307	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	112894458	12A2p6	cell line	sgMsh2	112894458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	90	16	0.177777778	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.A1161G:p.I387M,Tead1:NM_009346:exon12:c.A1173G:p.I391M,Tead1:NM_001166584:exon13:c.A1236G:p.I412M"	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	248	561	125	0.222816399	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9999642	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr7	114219660	12A2p6	cell line	sgMsh2	114219660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	95	261	46	0.176245211	exonic	Copb1	nonsynonymous SNV	Copb1:NM_033370:exon19:c.T2422C:p.S808P	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9993709	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr7	115477063	12A2p6	cell line	sgMsh2	115477063	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	101	0	0	NA	exonic	Sox6	nonsynonymous SNV	"Sox6:NM_001277328:exon14:c.G2216A:p.G739D,Sox6:NM_001277327:exon15:c.G2219A:p.G740D,Sox6:NM_001025559:exon16:c.G2219A:p.G740D,Sox6:NM_001025560:exon16:c.G2213A:p.G738D,Sox6:NM_001277326:exon16:c.G2339A:p.G780D,Sox6:NM_011445:exon17:c.G2339A:p.G780D"	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	ACC	nonsynonymous	CATAC	10	CATACCATAC	NA
M3	chr7	116158057	12A2p6	cell line	sgMsh2	116158057	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	46	4	3	0.75	exonic	Plekha7	nonsynonymous SNV	"Plekha7:NM_001305186:exon9:c.A1519G:p.S507G,Plekha7:NM_001305189:exon9:c.A1342G:p.S448G,Plekha7:NM_001305190:exon9:c.A1471G:p.S491G,Plekha7:NM_172743:exon9:c.A949G:p.S317G,Plekha7:NM_001305185:exon11:c.A1657G:p.S553G"	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9134782	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	117549082	12A2p6	cell line	sgMsh2	117549082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	69	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon3:c.T880C:p.F294L	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.749408481	1	0.609678	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr7	118490892	12A2p6	cell line	sgMsh2	118490892	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.204	47	148	30	0.202702703	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.T443A:p.L148Q	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9322728	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	118543426	12A2p6	cell line	sgMsh2	118543426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	102	3	1	0.333333333	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon13:c.A1738G:p.S580G	7qF1	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995884	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr7	119449012	12A2p6	cell line	sgMsh2	119449012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	110	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon8:c.A1373G:p.Y458C	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	119489529	12A2p6	cell line	sgMsh2	119489529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	102	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.A1248G:p.K416K	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995884	ATT	synonymous	NA	NA	NA	NA
M3	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	138	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	121500719	12A2p6	cell line	sgMsh2	121500719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	exonic	Hs3st2	nonsynonymous SNV	Hs3st2:NM_001081327:exon2:c.T787C:p.Y263H	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	121935740	12A2p6	cell line	sgMsh2	121935740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	67	35	14	0.4	exonic	Cog7	nonsynonymous SNV	Cog7:NM_001033318:exon13:c.T1721C:p.L574P	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9965726	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	121971366	12A2p6	cell line	sgMsh2	121971366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	101	46	0	0	exonic	Cog7	frameshift deletion	Cog7:NM_001033318:exon4:c.518delA:p.K173Sfs*7	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr7	122071974	12A2p6	cell line	sgMsh2	122071974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	72	158	37	0.234177215	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon5:c.C872T:p.T291I	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9974668	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr7	122076189	12A2p6	cell line	sgMsh2	122076189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	81	121	26	0.214876033	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon6:c.T995C:p.M332T	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.723714476	2	0.598685	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr7	122176547	12A2p6	cell line	sgMsh2	122176547	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	118	0	0	NA	exonic	Ern2	synonymous SNV	"Ern2:NM_001316689:exon12:c.C1323A:p.A441A,Ern2:NM_012016:exon12:c.C1323A:p.A441A"	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	AGG	synonymous	NA	NA	NA	NA
M3	chr7	122181574	12A2p6	cell line	sgMsh2	122181574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	82	0	0	NA	exonic	Ern2	nonsynonymous SNV	"Ern2:NM_001316689:exon5:c.G353T:p.S118I,Ern2:NM_012016:exon5:c.G353T:p.S118I"	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986171	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	122671909	12A2p6	cell line	sgMsh2	122671909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	142	0	0	NA	exonic	Cacng3	nonsynonymous SNV	Cacng3:NM_019430:exon1:c.A136G:p.S46G	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.9515097	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	122999884	12A2p6	cell line	sgMsh2	122999884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	37	128	15	0.1171875	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon17:c.A3417G:p.L1139L	7qF2	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9792282	TAC	synonymous	NA	NA	NA	NA
M3	chr7	123494884	12A2p6	cell line	sgMsh2	123494884	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	74	0	0	NA	exonic	Zkscan2	frameshift deletion	Zkscan2:NM_001081329:exon4:c.706delA:p.S236Vfs*35	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr7	126547831	12A2p6	cell line	sgMsh2	126547831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	71	384	91	0.236979167	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon17:c.T2268G:p.N756K	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr7	126552054	12A2p6	cell line	sgMsh2	126552054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	76	366	91	0.24863388	exonic	Eif3c	synonymous SNV	Eif3c:NM_146200:exon16:c.T2097C:p.H699H	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	CAT	synonymous	NA	NA	NA	NA
M3	chr7	126586228	12A2p6	cell line	sgMsh2	126586228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	73	2	0	0	exonic	Apobr	nonsynonymous SNV	Apobr:NM_138310:exon2:c.A910G:p.T304A	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	2	1	1	0.9976155	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	126587412	12A2p6	cell line	sgMsh2	126587412	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	68	3	0	0	exonic	Apobr	synonymous SNV	Apobr:NM_138310:exon2:c.C2094T:p.G698G	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9201405	GCT	synonymous	NA	NA	NA	NA
M3	chr7	126797375	12A2p6	cell line	sgMsh2	126797375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	120	1183	8	0.006762468	exonic	Aldoa	stopgain	"Aldoa:NM_001177308:exon3:c.C286T:p.Q96X,Aldoa:NM_007438:exon3:c.C286T:p.Q96X,Aldoa:NM_001177307:exon4:c.C448T:p.Q150X"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.899290177	1	0.9942277	TGG	nonsynonymous	G	5	GGGGG	NA
M3	chr7	126998574	12A2p6	cell line	sgMsh2	126998574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	84	151	34	0.225165563	exonic	Mvp	nonsynonymous SNV	Mvp:NM_080638:exon4:c.T371C:p.V124A	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	127026381	12A2p6	cell line	sgMsh2	127026381	G	-	Deletion	Strelka2;Vardict	2	0.3182	22	14	2	0.142857143	exonic	Maz	frameshift deletion	"Maz:NM_001372522:exon1:c.39delC:p.F14Sfs*14,Maz:NM_001372523:exon1:c.39delC:p.F14Sfs*14,Maz:NM_010772:exon1:c.39delC:p.F14Sfs*14"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
M3	chr7	127051630	12A2p6	cell line	sgMsh2	127051630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	180	0	0	NA	exonic	Zg16	nonsynonymous SNV	Zg16:NM_026918:exon3:c.T185C:p.V62A	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9984091	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	127519582	12A2p6	cell line	sgMsh2	127519582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	159	42	11	0.261904762	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon4:c.T56C:p.M19T	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.999987	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr7	127560756	12A2p6	cell line	sgMsh2	127560756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	52	126	27	0.214285714	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.A9803G:p.K3268R	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9915312	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	127583520	12A2p6	cell line	sgMsh2	127583520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	37	4	3	0.75	exonic	Ccdc189	nonsynonymous SNV	"Ccdc189:NM_001382406:exon8:c.T776C:p.L259P,Ccdc189:NM_001033040:exon9:c.T893C:p.L298P"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.8872887	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	66	20	10	0.5	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr7	127867162	12A2p6	cell line	sgMsh2	127867162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	64	17	3	0.176470588	exonic	Zfp668	synonymous SNV	"Zfp668:NM_001362190:exon3:c.A849G:p.P283P,Zfp668:NM_001362191:exon3:c.A849G:p.P283P,Zfp668:NM_146259:exon3:c.A849G:p.P283P,Zfp668:NM_001362189:exon4:c.A849G:p.P283P,Zfp668:NM_001362192:exon5:c.A849G:p.P283P"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.556703443	2	0.9511147	GTG	synonymous	NA	NA	NA	NA
M3	chr7	127878688	12A2p6	cell line	sgMsh2	127878688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	91	44	7	0.159090909	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.C36T:p.D12D	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	ACT	synonymous	NA	NA	NA	NA
M3	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	169	198	54	0.272727273	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9978637	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr7	127944913	12A2p6	cell line	sgMsh2	127944913	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	39	0	0	NA	exonic	Prss36	synonymous SNV	Prss36:NM_001319147:exon5:c.C285A:p.T95T	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	8.80E-05	AGG	synonymous	NA	NA	NA	NA
M3	chr7	128086037	12A2p6	cell line	sgMsh2	128086037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	148	0	0	NA	exonic	Itgam	nonsynonymous SNV	"Itgam:NM_001082960:exon12:c.A1321G:p.T441A,Itgam:NM_008401:exon12:c.A1321G:p.T441A"	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9997582	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	128185792	12A2p6	cell line	sgMsh2	128185792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon9:c.T976C:p.Y326H	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CTA	nonsynonymous	GCTAT	10	GCTATGCTAT	NA
M3	chr7	128237187	12A2p6	cell line	sgMsh2	128237187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	142	10	1	0.1	exonic	9130023H24Rik	nonsynonymous SNV	9130023H24Rik:NM_177001:exon1:c.A233G:p.K78R	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9988166	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr7	128682320	12A2p6	cell line	sgMsh2	128682320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	152	38	12	0.315789474	exonic	Inpp5f	nonsynonymous SNV	Inpp5f:NM_178641:exon14:c.T1642C:p.Y548H	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9997533	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr7	135152261	12A2p6	cell line	sgMsh2	135152261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	74	77	17	0.220779221	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon47:c.C4766T:p.A1589V	7qF3	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.80936116	1	0.8499029	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr7	138209801	12A2p6	cell line	sgMsh2	138209801	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	110	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon12:c.T1663A:p.F555I	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9507311	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	139661032	12A2p6	cell line	sgMsh2	139661032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	51	0	0	NA	exonic	Cfap46	synonymous SNV	Cfap46:NM_001302546:exon12:c.T1420C:p.L474L	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9830322	AAC	synonymous	NA	NA	NA	NA
M3	chr7	139986776	12A2p6	cell line	sgMsh2	139986776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	132	1	0	0	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon15:c.T1579A:p.F527I,Adam8:NM_007403:exon15:c.T1582A:p.F528I"	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9988029	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr7	140336044	12A2p6	cell line	sgMsh2	140336044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	235	0	0	NA	exonic	Olfr527	nonsynonymous SNV	Olfr527:NM_001011776:exon1:c.C181A:p.L61M	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.1519	79	8	1	0.125	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.650486562	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M3	chr7	141162882	12A2p6	cell line	sgMsh2	141162882	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.303	33	257	68	0.26459144	exonic	Rnh1	nonsynonymous SNV	"Rnh1:NM_001172100:exon7:c.T911C:p.L304S,Rnh1:NM_001172101:exon7:c.T1019C:p.L340S,Rnh1:NM_145135:exon7:c.T911C:p.L304S"	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.973675	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr7	141278716	12A2p6	cell line	sgMsh2	141278716	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	53	0	0	NA	exonic;splicing	Sct;Sct	nonsynonymous SNV	"Sct:NM_001287171:exon3:c.G192T:p.Q64H,Sct:NM_011328:exon3:c.G192T:p.Q64H"	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr7	141466167	12A2p6	cell line	sgMsh2	141466167	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	45	3	0	0	exonic	Cracr2b	nonsynonymous SNV	Cracr2b:NM_001025103:exon10:c.T1129G:p.C377G	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9871102	CTG	nonsynonymous	CTG	15	CTGCTGCTGCTGCTG	NA
M3	chr7	141857990	12A2p6	cell line	sgMsh2	141857990	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.176	430	18	8	0.444444444	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.C4672A:p.P1558T	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.753690815	2	0.9937633	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr7	144410734	12A2p6	cell line	sgMsh2	144410734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	71	2	2	1	exonic	Shank2	nonsynonymous SNV	"Shank2:NM_001081370:exon10:c.A2078G:p.Y693C,Shank2:NM_001113373:exon15:c.A2708G:p.Y903C"	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr7	145321506	12A2p6	cell line	sgMsh2	145321506	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.233	72	0	0	NA	exonic	Mrgprd	frameshift insertion	Mrgprd:NM_203490:exon2:c.114dupG:p.M41Dfs*31	7qF5	chr7-3489139-145323643	4	2	2	0.96	4.111040811	NA	1	0.997783864	NA	NA	GTG	frameshift	G	5	GGGGG	1
M3	chr8	3851259	12A2p6	cell line	sgMsh2	3851259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	178	0	0	NA	exonic	Cd209e	nonsynonymous SNV	Cd209e:NM_130905:exon5:c.A394G:p.S132G	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.999938	CTA	nonsynonymous	T	5	TTTTT	NA
M3	chr8	4250582	12A2p6	cell line	sgMsh2	4250582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	35	0	0	NA	exonic	Tgfbr3l	synonymous SNV	Tgfbr3l:NM_001195258:exon5:c.T759C:p.G253G	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.976612	GTG	synonymous	NA	NA	NA	NA
M3	chr8	4516958	12A2p6	cell line	sgMsh2	4516958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	78	25	0	0	exonic	Cers4	nonsynonymous SNV	Cers4:NM_026058:exon3:c.T259C:p.Y87H	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.723714476	2	0.5806785	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr8	5105121	12A2p6	cell line	sgMsh2	5105121	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.196	151	0	0	NA	exonic	Slc10a2	synonymous SNV	Slc10a2:NM_011388:exon1:c.A63G:p.V21V	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.839337499	1	0.9631496	GTA	synonymous	NA	NA	NA	NA
M3	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	343	144	25	0.173611111	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	1.23E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M3	chr8	9972537	12A2p6	cell line	sgMsh2	9972537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	202	63	19	0.301587302	exonic	Lig4	synonymous SNV	"Lig4:NM_001377042:exon2:c.A1242G:p.V414V,Lig4:NM_176953:exon2:c.A1242G:p.V414V"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.999999	CTA	synonymous	NA	NA	NA	NA
M3	chr8	10554634	12A2p6	cell line	sgMsh2	10554634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	58	0	0	NA	exonic	Myo16	nonsynonymous SNV	Myo16:NM_001319151:exon29:c.T3413G:p.L1138R	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.9940991	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr8	11518463	12A2p6	cell line	sgMsh2	11518463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	43	14	1	0.071428571	exonic	Cars2	nonsynonymous SNV	"Cars2:NM_001359137:exon11:c.C1091T:p.A364V,Cars2:NM_024248:exon11:c.C1094T:p.A365V"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.9854722	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr8	11633005	12A2p6	cell line	sgMsh2	11633005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	86	35	8	0.228571429	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon2:c.T221C:p.M74T,Ankrd10:NM_133971:exon2:c.T221C:p.M74T"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr8	12812332	12A2p6	cell line	sgMsh2	12812332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	63	19	0.301587302	exonic	Atp11a	nonsynonymous SNV	"Atp11a:NM_001293667:exon3:c.A183G:p.I61M,Atp11a:NM_001293668:exon3:c.A183G:p.I61M,Atp11a:NM_015804:exon3:c.A183G:p.I61M"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.903572512	1	0.9995387	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	89	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.999095	TCG	synonymous	NA	NA	NA	NA
M3	chr8	13454216	12A2p6	cell line	sgMsh2	13454216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	119	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon4:c.A344G:p.Y115C,Tmem255b:NM_001143671:exon5:c.A407G:p.Y136C"	8qA1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998532	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	15945033	12A2p6	cell line	sgMsh2	15945033	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	172	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon52:c.C8001A:p.L2667L	8qA1.2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.646632461	2	0.9988392	AGA	synonymous	NA	NA	NA	NA
M3	chr8	18632154	12A2p6	cell line	sgMsh2	18632154	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	103	25	3	0.12	exonic	Mcph1	nonsynonymous SNV	Mcph1:NM_173189:exon8:c.G1306T:p.G436C	8qA1.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	19195133	12A2p6	cell line	sgMsh2	19195133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	79	0	0	NA	exonic	Defb14	nonsynonymous SNV	Defb14:NM_183026:exon2:c.T125C:p.V42A	8qA1.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	98	8	0	0	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994755	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr8	22775632	12A2p6	cell line	sgMsh2	22775632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	77	40	9	0.225	exonic	Plat	synonymous SNV	Plat:NM_008872:exon8:c.C690A:p.S230S	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9973226	CCC	synonymous	NA	NA	NA	NA
M3	chr8	22782006	12A2p6	cell line	sgMsh2	22782006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	75	44	9	0.204545455	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon14:c.T1580C:p.I527T	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9978873	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr8	23119085	12A2p6	cell line	sgMsh2	23119085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	104	4	2	0.5	exonic	Ank1	synonymous SNV	"Ank1:NM_001277280:exon32:c.T3981C:p.F1327F,Ank1:NM_001277281:exon32:c.T3870C:p.F1290F,Ank1:NM_001277284:exon32:c.T3870C:p.F1290F,Ank1:NM_001110783:exon33:c.T4005C:p.F1335F,Ank1:NM_001277286:exon33:c.T3918C:p.F1306F,Ank1:NM_001277289:exon33:c.T3918C:p.F1306F,Ank1:NM_031158:exon33:c.T3918C:p.F1306F"	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996354	TTG	synonymous	NA	NA	NA	NA
M3	chr8	24646316	12A2p6	cell line	sgMsh2	24646316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	196	0	0	NA	exonic	Adam18	synonymous SNV	Adam18:NM_010084:exon12:c.A1188G:p.E396E	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999986	CTT	synonymous	NA	NA	NA	NA
M3	chr8	24996778	12A2p6	cell line	sgMsh2	24996778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	118	460	88	0.191304348	exonic	Adam9	nonsynonymous SNV	"Adam9:NM_001270996:exon6:c.A483G:p.I161M,Adam9:NM_007404:exon6:c.A483G:p.I161M"	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.999844	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr8	25593815	12A2p6	cell line	sgMsh2	25593815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	131	7	2	0.285714286	exonic	Letm2	synonymous SNV	"Letm2:NM_001364069:exon3:c.A399G:p.K133K,Letm2:NM_173012:exon3:c.A399G:p.K133K"	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999291	CTT	synonymous	NA	NA	NA	NA
M3	chr8	25954655	12A2p6	cell line	sgMsh2	25954655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	51	17	0.333333333	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon12:c.A1264C:p.S422R	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9927265	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr8	27115250	12A2p6	cell line	sgMsh2	27115250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	37	6	1	0.166666667	exonic	Adgra2	nonsynonymous SNV	Adgra2:NM_054044:exon12:c.T1622C:p.V541A	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.830772831	1	0.8717202	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	88	31	7	0.225806452	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9990385	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	27394299	12A2p6	cell line	sgMsh2	27394299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	90	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon4:c.A1018G:p.M340V,Chrnb3:NM_173212:exon5:c.A1063G:p.M355V"	8qA2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991482	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr8	33255595	12A2p6	cell line	sgMsh2	33255595	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	102	19	0	0	exonic	Wrn	frameshift deletion	"Wrn:NM_001122822:exon30:c.3485delA:p.N1162Tfs*1,Wrn:NM_011721:exon30:c.3485delA:p.N1162Tfs*1"	8qA3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.865031504	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3	chr8	33292568	12A2p6	cell line	sgMsh2	33292568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	175	24	0	0	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon19:c.A2333G:p.D778G,Wrn:NM_011721:exon19:c.A2333G:p.D778G"	8qA3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999951	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr8	33776515	12A2p6	cell line	sgMsh2	33776515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	97	178	30	0.168539326	exonic	Gtf2e2	nonsynonymous SNV	"Gtf2e2:NM_001167921:exon8:c.T825G:p.N275K,Gtf2e2:NM_001167922:exon8:c.T825G:p.N275K,Gtf2e2:NM_026584:exon8:c.T825G:p.N275K"	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994427	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr8	34873091	12A2p6	cell line	sgMsh2	34873091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	144	89	17	0.191011236	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon8:c.A1372G:p.N458D	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999678	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr8	40536881	12A2p6	cell line	sgMsh2	40536881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	81	117	32	0.273504274	exonic	Vps37a	nonsynonymous SNV	Vps37a:NM_033560:exon5:c.A428G:p.N143S	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9985308	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr8	40908522	12A2p6	cell line	sgMsh2	40908522	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	128	0	0	NA	exonic	Slc7a2	nonsynonymous SNV	Slc7a2:NM_007514:exon7:c.G1180T:p.G394W	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999149	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	43141374	12A2p6	cell line	sgMsh2	43141374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	103	0	0	NA	exonic	Triml1	nonsynonymous SNV	Triml1:NM_177742:exon1:c.A19G:p.M7V	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9996126	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	502	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr8	44951776	12A2p6	cell line	sgMsh2	44951776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	189	310	65	0.209677419	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon1:c.T1563C:p.S521S	8qB1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999979	GTA	synonymous	NA	NA	NA	NA
M3	chr8	46556178	12A2p6	cell line	sgMsh2	46556178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	86	13	1	0.076923077	exonic	Cenpu	nonsynonymous SNV	"Cenpu:NM_001368403:exon3:c.A187G:p.T63A,Cenpu:NM_027973:exon3:c.A187G:p.T63A"	8qB1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9987101	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	63	80	3	0.0375	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M3	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	84	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9987749	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	90	66	20	0.303030303	exonic;splicing	Aga;Aga	nonsynonymous SNV	Aga:NM_001005847:exon7:c.G706T:p.G236W	8qB1.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.659479463	2	9.96E-05	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	54639969	12A2p6	cell line	sgMsh2	54639969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	42	0	0	NA	exonic	Wdr17	synonymous SNV	"Wdr17:NM_001372376:exon20:c.A2049G:p.L683L,Wdr17:NM_001372374:exon21:c.A2598G:p.L866L,Wdr17:NM_001372375:exon22:c.A2337G:p.L779L,Wdr17:NM_001364215:exon23:c.A2889G:p.L963L,Wdr17:NM_001372373:exon24:c.A3111G:p.L1037L,Wdr17:NM_001172152:exon25:c.A3132G:p.L1044L,Wdr17:NM_001372370:exon25:c.A3183G:p.L1061L,Wdr17:NM_001372371:exon25:c.A3183G:p.L1061L,Wdr17:NM_001372372:exon25:c.A3183G:p.L1061L,Wdr17:NM_028220:exon26:c.A3153G:p.L1051L"	8qB1.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.8822191	GTA	synonymous	G	5	GGGGG	NA
M3	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	47	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.980654527	1	0.9849085	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr8	65014576	12A2p6	cell line	sgMsh2	65014576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	92	0	0	NA	exonic	Trim61	nonsynonymous SNV	"Trim61:NM_001177551:exon2:c.A32G:p.Q11R,Trim61:NM_153110:exon3:c.A32G:p.Q11R"	8qB3.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9990923	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr8	66418914	12A2p6	cell line	sgMsh2	66418914	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	72	0	0	NA	exonic	Marchf1	nonsynonymous SNV	"Marchf1:NM_001166375:exon2:c.G311T:p.W104L,Marchf1:NM_001166372:exon6:c.G341T:p.W114L,Marchf1:NM_001363123:exon6:c.G329T:p.W110L,Marchf1:NM_001363125:exon6:c.G329T:p.W110L,Marchf1:NM_175188:exon6:c.G329T:p.W110L,Marchf1:NM_001293784:exon7:c.G341T:p.W114L,Marchf1:NM_001363124:exon7:c.G341T:p.W114L"	8qB3.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.7432512	TGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	66511988	12A2p6	cell line	sgMsh2	66511988	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	96	0	0	NA	exonic	Tktl2	nonsynonymous SNV	"Tktl2:NM_001271574:exon1:c.A197C:p.E66A,Tktl2:NM_028927:exon1:c.A197C:p.E66A"	8qB3.1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994079	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr8	69815491	12A2p6	cell line	sgMsh2	69815491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	80	22	7	0.318181818	exonic	Gmip	nonsynonymous SNV	Gmip:NM_198101:exon12:c.G1194T:p.E398D	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9984391	AGG	nonsynonymous	GGA	11	GGAGGAGGAGG	NA
M3	chr8	70112056	12A2p6	cell line	sgMsh2	70112056	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.224	19	0	0	NA	exonic	Ncan	nonsynonymous SNV	Ncan:NM_007789:exon6:c.T907C:p.C303R	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9255446	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	70135080	12A2p6	cell line	sgMsh2	70135080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	89	50	11	0.22	exonic	Rfxank	synonymous SNV	"Rfxank:NM_001025589:exon6:c.T520C:p.L174L,Rfxank:NM_011266:exon6:c.T550C:p.L184L"	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.999095	AAC	synonymous	NA	NA	NA	NA
M3	chr8	70174385	12A2p6	cell line	sgMsh2	70174385	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	19	9	0.473684211	exonic	Tmem161a	nonsynonymous SNV	Tmem161a:NM_145597:exon2:c.G86A:p.R29H	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9854722	CGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
M3	chr8	70251633	12A2p6	cell line	sgMsh2	70251633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	73	18	3	0.166666667	exonic	Sugp2	nonsynonymous SNV	"Sugp2:NM_001168290:exon5:c.A1819G:p.S607G,Sugp2:NM_172755:exon5:c.A1819G:p.S607G"	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	70386210	12A2p6	cell line	sgMsh2	70386210	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	95	23	5	0.217391304	exonic	Crtc1	synonymous SNV	Crtc1:NM_001004062:exon14:c.C1807T:p.L603L	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9590362	AGG	synonymous	NA	NA	NA	NA
M3	chr8	70485126	12A2p6	cell line	sgMsh2	70485126	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	115	1	0	0	exonic	Tmem59l	nonsynonymous SNV	"Tmem59l:NM_001368367:exon4:c.G450T:p.E150D,Tmem59l:NM_001368366:exon5:c.G603T:p.E201D,Tmem59l:NM_182991:exon5:c.G603T:p.E201D"	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9995664	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr8	71684012	12A2p6	cell line	sgMsh2	71684012	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	70	19	1	0.052631579	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.929266517	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	55	13	6	0.461538462	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	9.94E-07	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M3	chr8	72146506	12A2p6	cell line	sgMsh2	72146506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	234	610	78	0.127868852	exonic	Tpm4	synonymous SNV	Tpm4:NM_001001491:exon5:c.A510G:p.S170S	8qB3.3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M3	chr8	77277273	12A2p6	cell line	sgMsh2	77277273	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	38	18	0	0	exonic	Arhgap10	frameshift deletion	"Arhgap10:NM_001363417:exon19:c.1836delC:p.S613Afs*22,Arhgap10:NM_001363420:exon19:c.1527delC:p.S510Afs*22,Arhgap10:NM_001363418:exon20:c.1902delC:p.S635Afs*22,Arhgap10:NM_001363419:exon20:c.1593delC:p.S532Afs*22,Arhgap10:NM_001363421:exon20:c.1593delC:p.S532Afs*22,Arhgap10:NM_030113:exon20:c.1902delC:p.S635Afs*22"	8qC1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.920701848	NA	NA	TGG	frameshift	CTG	9	CTGCTGCTG	-1
M3	chr8	78436366	12A2p6	cell line	sgMsh2	78436366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	77	0	0	NA	exonic	Pou4f2	nonsynonymous SNV	Pou4f2:NM_138944:exon1:c.C39A:p.S13R	8qC1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.869313838	1	0.9595604	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr8	83915541	12A2p6	cell line	sgMsh2	83915541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	56	6	3	0.5	exonic	Adgrl1	nonsynonymous SNV	Adgrl1:NM_181039:exon2:c.A43G:p.T15A	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.526727104	2	0.9274339	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	83929624	12A2p6	cell line	sgMsh2	83929624	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	13	0	0	exonic	Adgrl1	stopgain	Adgrl1:NM_181039:exon5:c.T555A:p.Y185X	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr8	84134730	12A2p6	cell line	sgMsh2	84134730	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	37	24	1	0.041666667	exonic	Cc2d1a	frameshift deletion	"Cc2d1a:NM_001381872:exon22:c.2118delG:p.R707Gfs*3,Cc2d1a:NM_001381871:exon23:c.2322delG:p.R775Gfs*3,Cc2d1a:NM_001381873:exon23:c.2229delG:p.R744Gfs*3,Cc2d1a:NM_145970:exon23:c.2325delG:p.R776Gfs*3"	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3	chr8	84234985	12A2p6	cell line	sgMsh2	84234985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	45	41	7	0.170731707	exonic	Zswim4	synonymous SNV	Zswim4:NM_172503:exon2:c.A258G:p.E86E	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9871102	CTT	synonymous	NA	NA	NA	NA
M3	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	14	9	4	0.444444444	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.9208679	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	84611681	12A2p6	cell line	sgMsh2	84611681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	74	12	1	0.083333333	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon34:c.C5048T:p.T1683M,Cacna1a:NM_001252060:exon35:c.C5189T:p.T1730M,Cacna1a:NM_001252061:exon35:c.C5189T:p.T1730M,Cacna1a:NM_007578:exon35:c.C5189T:p.T1730M"	8qC2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.7009312	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr8	84902752	12A2p6	cell line	sgMsh2	84902753	CA	AT	DBS	Mutect2;Vardict	2	0.454	34	0	0	NA	exonic	Klf1	nonframeshift substitution	Klf1:NM_010635:exon2:c.151_152AT:p.H51I	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr8	84997034	12A2p6	cell line	sgMsh2	84997034	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.128	75	95	3	0.031578947	exonic	Hook2	frameshift deletion	"Hook2:NM_001372361:exon10:c.977delA:p.K327Sfs*4,Hook2:NM_001167991:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001363497:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372357:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372358:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372359:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372360:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372362:exon12:c.779delA:p.K261Sfs*4,Hook2:NM_133255:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001363498:exon13:c.1112delA:p.K372Sfs*4"	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.548138775	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr8	85001225	12A2p6	cell line	sgMsh2	85001225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	75	31	0.413333333	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001372361:exon16:c.A1498G:p.T500A,Hook2:NM_001372357:exon17:c.A1903G:p.T635A,Hook2:NM_001372360:exon17:c.A1666G:p.T556A,Hook2:NM_001167991:exon18:c.A1705G:p.T569A,Hook2:NM_001372358:exon18:c.A1705G:p.T569A,Hook2:NM_001372359:exon18:c.A1705G:p.T569A,Hook2:NM_001372362:exon18:c.A1300G:p.T434A,Hook2:NM_133255:exon18:c.A1705G:p.T569A,Hook2:NM_001363497:exon19:c.A1714G:p.T572A,Hook2:NM_001363498:exon19:c.A1633G:p.T545A"	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	87471767	12A2p6	cell line	sgMsh2	87471767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	76	0	0	NA	exonic	Cbln1	synonymous SNV	Cbln1:NM_019626:exon2:c.T309C:p.T103T	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9980114	AAG	synonymous	NA	NA	NA	NA
M3	chr8	87782994	12A2p6	cell line	sgMsh2	87782994	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	50	0	0	NA	exonic	Zfp423	nonsynonymous SNV	"Zfp423:NM_001310520:exon2:c.T346A:p.S116T,Zfp423:NM_033327:exon4:c.T721A:p.S241T"	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9904495	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	88156793	12A2p6	cell line	sgMsh2	88156793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	132	101	34	0.336633663	exonic	Heatr3	nonsynonymous SNV	Heatr3:NM_172757:exon9:c.A1253G:p.H418R	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999332	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	88591669	12A2p6	cell line	sgMsh2	88591669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	49	0	0	NA	exonic	Nkd1	synonymous SNV	"Nkd1:NM_001163660:exon8:c.A621G:p.Q207Q,Nkd1:NM_027280:exon10:c.A933G:p.Q311Q"	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	AAG	synonymous	NA	NA	NA	NA
M3	chr8	88705480	12A2p6	cell line	sgMsh2	88705480	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	93	88	26	0.295454545	exonic	Cyld	synonymous SNV	"Cyld:NM_001128170:exon2:c.T105G:p.T35T,Cyld:NM_173369:exon2:c.T105G:p.T35T,Cyld:NM_001128171:exon3:c.T105G:p.T35T,Cyld:NM_001276279:exon3:c.T105G:p.T35T"	8qC3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9737488	CTC	synonymous	ACAA	10	ACAAACAAAC	NA
M3	chr8	91106877	12A2p6	cell line	sgMsh2	91106877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	133	42	12	0.285714286	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon15:c.T2279C:p.I760T,Rbl2:NM_001282001:exon16:c.T2378C:p.I793T,Rbl2:NM_011250:exon16:c.T2408C:p.I803T"	8qC4	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9944037	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr8	92678500	12A2p6	cell line	sgMsh2	92678500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	45	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.C995T:p.T332M,Irx6:NM_022428:exon5:c.C995T:p.T332M"	8qC5	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9871102	ACG	nonsynonymous	NA	NA	NA	NA
M3	chr8	93079395	12A2p6	cell line	sgMsh2	93079395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	83	0	0	NA	exonic	Ces1b	nonsynonymous SNV	"Ces1b:NM_001081372:exon2:c.C217T:p.P73S,Ces1b:NM_001381922:exon2:c.C217T:p.P73S"	8qC5	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8774869	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr8	93271855	12A2p6	cell line	sgMsh2	93271855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	exonic	Ces1f	nonsynonymous SNV	Ces1f:NM_144930:exon4:c.G512A:p.R171H	8qC5	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.805078826	1	0.8405	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr8	102650639	12A2p6	cell line	sgMsh2	102650639	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	122	0	0	NA	exonic	Cdh11	synonymous SNV	Cdh11:NM_009866:exon9:c.C1374A:p.V458V	8qD1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.582397448	2	0.9982308	AGA	synonymous	NA	NA	NA	NA
M3	chr8	104617794	12A2p6	cell line	sgMsh2	104617794	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	108	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon12:c.C1537A:p.P513T,Cdh16:NM_001252628:exon13:c.C1627A:p.P543T,Cdh16:NM_007663:exon13:c.C1627A:p.P543T"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.987455	GGG	nonsynonymous	GGGCCT	17	GGGCCTGGGCCTGGGCC	NA
M3	chr8	105049902	12A2p6	cell line	sgMsh2	105049902	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	118	0	0	NA	exonic	Ces3a	nonsynonymous SNV	"Ces3a:NM_001164681:exon2:c.A121T:p.T41S,Ces3a:NM_198672:exon2:c.A121T:p.T41S"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.999844	TAC	nonsynonymous	C	5	CCCCC	NA
M3	chr8	105308779	12A2p6	cell line	sgMsh2	105308779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	51	21	6	0.285714286	exonic	Elmo3	synonymous SNV	Elmo3:NM_172760:exon15:c.G1506A:p.L502L	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.9910065	TGA	synonymous	NA	NA	NA	NA
M3	chr8	105329467	12A2p6	cell line	sgMsh2	105329467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	61	69	16	0.231884058	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon22:c.T3524C:p.L1175P	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9950758	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	105697256	12A2p6	cell line	sgMsh2	105697256	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.234	46	3	1	0.333333333	exonic	Carmil2	nonsynonymous SNV	Carmil2:NM_001357333:exon36:c.A3740G:p.E1247G	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	105842526	12A2p6	cell line	sgMsh2	105842526	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	0	0	NA	exonic	Tsnaxip1	nonsynonymous SNV	Tsnaxip1:NM_024445:exon12:c.T1507C:p.F503L	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999507	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	75	113	22	0.194690265	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9978873	GGC	synonymous	NA	NA	NA	NA
M3	chr8	106543874	12A2p6	cell line	sgMsh2	106543874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	78	20	6	0.3	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon10:c.A1382G:p.K461R,Cdh3:NM_007665:exon10:c.A1379G:p.K460R"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	106555377	12A2p6	cell line	sgMsh2	106555377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	71	20	2	0.1	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon16:c.A2396G:p.Y799C,Cdh3:NM_007665:exon16:c.A2393G:p.Y798C"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.77938482	1	0.7446964	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	106916184	12A2p6	cell line	sgMsh2	106916184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	138	108	23	0.212962963	exonic	Utp4	synonymous SNV	"Utp4:NM_001358982:exon13:c.A1473G:p.A491A,Utp4:NM_011574:exon13:c.A1473G:p.A491A"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999536	CAG	synonymous	CAGT	9	CAGTCAGTC	NA
M3	chr8	106935824	12A2p6	cell line	sgMsh2	106935824	C	A	SNV	Mutect2;Vardict	2	0.5	7	5	1	0.2	exonic	Sntb2	nonsynonymous SNV	"Sntb2:NM_001368316:exon1:c.C23A:p.T8N,Sntb2:NM_009229:exon1:c.C23A:p.T8N"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.8822421	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	117	35	10	0.285714286	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	GAG	synonymous	NA	NA	NA	NA
M3	chr8	108949552	12A2p6	cell line	sgMsh2	108949552	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	45	22	5	0.227272727	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.G7233A:p.A2411A	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	2	1	1	0.9871102	CGC	synonymous	NA	NA	NA	NA
M3	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	320	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	1.75E-09	ACA	synonymous	NA	NA	NA	NA
M3	chr8	110593725	12A2p6	cell line	sgMsh2	110593725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	78	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon79:c.A13400G:p.Q4467R	8qD3	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	110738693	12A2p6	cell line	sgMsh2	110738693	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	13	8	2	0.25	exonic	Mtss2	frameshift deletion	"Mtss2:NM_001310591:exon14:c.1578delT:p.L527Wfs*26,Mtss2:NM_198625:exon14:c.1764delT:p.L589Wfs*26"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	64	21	4	0.19047619	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9958915	TAC	synonymous	NA	NA	NA	NA
M3	chr8	111259141	12A2p6	cell line	sgMsh2	111259141	A	G	SNV	Mutect2;Vardict	2	0.172	24	66	12	0.181818182	exonic	Glg1	nonsynonymous SNV	"Glg1:NM_001368315:exon1:c.T56C:p.L19P,Glg1:NM_009149:exon1:c.T56C:p.L19P"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.736561479	1	0.7506899	CAG	nonsynonymous	AGC	12	AGCAGCAGCAGC	NA
M3	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	71	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	111890877	12A2p6	cell line	sgMsh2	111890877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	0	0	NA	exonic	Chst5	nonsynonymous SNV	Chst5:NM_019950:exon2:c.T110C:p.L37P	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9915312	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr8	113777746	12A2p6	cell line	sgMsh2	113777746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	105	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon4:c.A712C:p.S238R	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8727019	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr8	117129198	12A2p6	cell line	sgMsh2	117129198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	110	0	0	NA	exonic	Bco1	nonsynonymous SNV	"Bco1:NM_001163028:exon9:c.T1231C:p.Y411H,Bco1:NM_021486:exon9:c.T1231C:p.Y411H"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997466	TTA	nonsynonymous	NA	NA	NA	NA
M3	chr8	119773276	12A2p6	cell line	sgMsh2	119773276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	93	21	1	0.047619048	exonic	Meak7	nonsynonymous SNV	Meak7:NM_028883:exon2:c.T143G:p.M48R	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7362857	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr8	119941912	12A2p6	cell line	sgMsh2	119941912	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	31	161	36	0.223602484	exonic	Usp10	synonymous SNV	"Usp10:NM_001310630:exon4:c.T948A:p.P316P,Usp10:NM_009462:exon4:c.T951A:p.P317P"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9703799	CTG	synonymous	NA	NA	NA	NA
M3	chr8	120083356	12A2p6	cell line	sgMsh2	120083356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	44	7	0.159090909	exonic	Zdhhc7	synonymous SNV	Zdhhc7:NM_133967:exon7:c.C624T:p.C208C	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986984	TGC	synonymous	NA	NA	NA	NA
M3	chr8	121782243	12A2p6	cell line	sgMsh2	121782243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon3:c.A1243G:p.T415A	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9845778	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	91	49	9	0.183673469	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	121888323	12A2p6	cell line	sgMsh2	121888323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	86	132	33	0.25	exonic	Slc7a5	nonsynonymous SNV	Slc7a5:NM_011404:exon3:c.T784C:p.W262R	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr8	122269834	12A2p6	cell line	sgMsh2	122269834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	79	0	0	NA	exonic	Zfp469	nonsynonymous SNV	Zfp469:NM_001362883:exon3:c.C9768A:p.N3256K	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr8	122439459	12A2p6	cell line	sgMsh2	122439459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	78	71	21	0.295774648	exonic	Mvd	synonymous SNV	Mvd:NM_138656:exon4:c.C324T:p.S108S	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9981415	AGC	synonymous	GCTGAG	13	GCTGAGGCTGAGG	NA
M3	chr8	123199101	12A2p6	cell line	sgMsh2	123199101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	92	0	0	NA	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon4:c.A294G:p.I98M	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.886443175	1	0.9812465	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr8	123200246	12A2p6	cell line	sgMsh2	123200246	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	79	0	0	NA	exonic	Dpep1	frameshift deletion	Dpep1:NM_007876:exon8:c.808delA:p.N270Tfs*54	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3	chr8	123363054	12A2p6	cell line	sgMsh2	123363054	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	53	17	1	0.058823529	exonic	Spire2	synonymous SNV	Spire2:NM_172287:exon11:c.T1623G:p.T541T	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	CTG	synonymous	NA	NA	NA	NA
M3	chr8	123373942	12A2p6	cell line	sgMsh2	123373942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.181	23	212	55	0.259433962	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001037877:exon1:c.T70C:p.L24L,Tcf25:NM_001037878:exon1:c.T70C:p.L24L,Tcf25:NM_001286362:exon1:c.T70C:p.L24L,Tcf25:NM_001286363:exon1:c.T70C:p.L24L,Tcf25:NM_001359075:exon1:c.T70C:p.L24L,Tcf25:NM_001359076:exon1:c.T70C:p.L24L,Tcf25:NM_025804:exon1:c.T70C:p.L24L"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.775102486	1	0.8020268	CTT	synonymous	NA	NA	NA	NA
M3	chr8	123384396	12A2p6	cell line	sgMsh2	123384396	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	181	257	50	0.194552529	exonic	Tcf25	nonsynonymous SNV	"Tcf25:NM_001286362:exon4:c.C521T:p.A174V,Tcf25:NM_001286363:exon4:c.C521T:p.A174V,Tcf25:NM_001359076:exon4:c.C521T:p.A174V,Tcf25:NM_001037877:exon5:c.C596T:p.A199V,Tcf25:NM_001037878:exon5:c.C596T:p.A199V,Tcf25:NM_001359075:exon5:c.C596T:p.A199V,Tcf25:NM_025804:exon5:c.C596T:p.A199V"	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999966	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	98	26	4	0.153846154	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9994755	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M3	chr8	123969761	12A2p6	cell line	sgMsh2	123969761	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	79	11	0	0	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon3:c.C775A:p.L259M	8qE2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	1	1	0.9983416	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr8	124529914	12A2p6	cell line	sgMsh2	124529914	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	104	67	15	0.223880597	exonic	Cog2	nonsynonymous SNV	Cog2:NM_029746:exon5:c.T398G:p.L133R	8qE2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.775102486	1	0.6642636	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	49	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.96	4.111040811	NA	1	0.732279145	1	0.6278725	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	5322821	12A2p6	cell line	sgMsh2	5322821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	187	0	0	NA	exonic	Casp4	synonymous SNV	"Casp4:NM_001379318:exon3:c.T96A:p.A32A,Casp4:NM_001379320:exon3:c.T264A:p.A88A,Casp4:NM_001379323:exon3:c.T24A:p.S8S,Casp4:NM_007609:exon3:c.T264A:p.A88A"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9999678	CTA	synonymous	NA	NA	NA	NA
M3	chr9	5352758	12A2p6	cell line	sgMsh2	5352758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	87	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon6:c.T579G:p.D193E	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr9	7171000	12A2p6	cell line	sgMsh2	7171000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	101	6	1	0.166666667	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon5:c.T628C:p.Y210H,Dync2h1:NM_029851:exon5:c.T628C:p.Y210H"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8856246	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	9046607	12A2p6	cell line	sgMsh2	9046607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	59	48	5	0.104166667	exonic	Arhgap42	stopgain	"Arhgap42:NM_001372566:exon7:c.C628T:p.Q210X,Arhgap42:NM_027823:exon7:c.C628T:p.Q210X,Arhgap42:NM_001372563:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372564:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372565:exon8:c.C730T:p.Q244X,Arhgap42:NM_001372567:exon8:c.C730T:p.Q244X"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.986445	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	9046615	12A2p6	cell line	sgMsh2	9046615	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	63	52	0	0	exonic	Arhgap42	nonsynonymous SNV	"Arhgap42:NM_001372566:exon7:c.G620T:p.S207I,Arhgap42:NM_027823:exon7:c.G620T:p.S207I,Arhgap42:NM_001372563:exon8:c.G722T:p.S241I,Arhgap42:NM_001372564:exon8:c.G722T:p.S241I,Arhgap42:NM_001372565:exon8:c.G722T:p.S241I,Arhgap42:NM_001372567:exon8:c.G722T:p.S241I"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	9115750	12A2p6	cell line	sgMsh2	9115750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	37	11	0.297297297	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372570:exon3:c.T228C:p.A76A,Arhgap42:NM_001372563:exon4:c.T324C:p.A108A,Arhgap42:NM_001372564:exon4:c.T324C:p.A108A,Arhgap42:NM_001372565:exon4:c.T324C:p.A108A,Arhgap42:NM_001372566:exon4:c.T324C:p.A108A,Arhgap42:NM_001372567:exon4:c.T324C:p.A108A,Arhgap42:NM_001372568:exon4:c.T324C:p.A108A,Arhgap42:NM_027823:exon4:c.T324C:p.A108A"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9727878	TAG	synonymous	NA	NA	NA	NA
M3	chr9	9180096	12A2p6	cell line	sgMsh2	9180096	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	99	28	6	0.214285714	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372564:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372565:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372566:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372567:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372568:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372569:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_027823:exon2:c.181delT:p.S61Pfs*26"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chr9	9706075	12A2p6	cell line	sgMsh2	9706075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	192	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1732G:p.S578G,Cntn5:NM_001170787:exon19:c.A2347G:p.S783G"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.999749	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	9706084	12A2p6	cell line	sgMsh2	9706084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	188	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1723C:p.S575R,Cntn5:NM_001170787:exon19:c.A2338C:p.S780R"	9qA1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9906652	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	14464244	12A2p6	cell line	sgMsh2	14464244	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	117	0	0	NA	exonic	Kdm4d	frameshift deletion	Kdm4d:NM_173433:exon2:c.317delA:p.K106Sfs*61	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chr9	14751912	12A2p6	cell line	sgMsh2	14751912	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.198	15	0	0	NA	exonic	Fut4	nonsynonymous SNV	Fut4:NM_010242:exon1:c.A85G:p.T29A	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.847902167	1	0.8586757	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	15307798	12A2p6	cell line	sgMsh2	15307798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	188	182	34	0.186813187	exonic	Taf1d	synonymous SNV	"Taf1d:NM_027261:exon2:c.A45G:p.R15R,Taf1d:NM_029248:exon2:c.A45G:p.R15R"	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999978	GAG	synonymous	NA	NA	NA	NA
M3	chr9	15962782	12A2p6	cell line	sgMsh2	15962782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	50	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon18:c.T10550A:p.L3517Q	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	9.55E-06	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	101	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.843619833	1	0.9452895	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	15996745	12A2p6	cell line	sgMsh2	15996745	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	185	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T7972G:p.W2658G	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9902034	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	16031155	12A2p6	cell line	sgMsh2	16031155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	98	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon5:c.T3932C:p.M1311T	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9934334	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	16376776	12A2p6	cell line	sgMsh2	16376776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	242	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon2:c.A1462G:p.T488A	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	18988575	12A2p6	cell line	sgMsh2	18988575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	192	0	0	NA	exonic	Olfr834	nonsynonymous SNV	Olfr834:NM_001011823:exon1:c.A586G:p.N196D	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999982	TAA	nonsynonymous	TAA	8	TAATAATA	NA
M3	chr9	19249191	12A2p6	cell line	sgMsh2	19249191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	168	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T207C:p.T69T	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.822208162	1	0.9282099	CAG	synonymous	NA	NA	NA	NA
M3	chr9	19249203	12A2p6	cell line	sgMsh2	19249203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	171	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T195C:p.N65N	9qA2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9991806	GAT	synonymous	NA	NA	NA	NA
M3	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	169	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9918659	TAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	19808619	12A2p6	cell line	sgMsh2	19808619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	424	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G300T:p.Q100H	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	21025563	12A2p6	cell line	sgMsh2	21025563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	23	43	13	0.302325581	exonic	Icam1	synonymous SNV	Icam1:NM_010493:exon3:c.G348A:p.E116E	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9527374	AGC	synonymous	NA	NA	NA	NA
M3	chr9	21191383	12A2p6	cell line	sgMsh2	21191383	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.255	42	15	0	0	exonic	Pde4a	frameshift insertion	"Pde4a:NM_001310750:exon2:c.192dupG:p.A65Gfs*28,Pde4a:NM_183408:exon2:c.363dupG:p.A122Gfs*28"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAG	frameshift	NA	NA	NA	1
M3	chr9	21266748	12A2p6	cell line	sgMsh2	21266748	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	134	32	10	0.3125	exonic	Atg4d	nonsynonymous SNV	Atg4d:NM_153583:exon2:c.T245G:p.V82G	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9973134	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	21345940	12A2p6	cell line	sgMsh2	21345940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	97	125	30	0.24	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon14:c.A1174G:p.K392E,Slc44a2:NM_001359227:exon14:c.A1174G:p.K392E,Slc44a2:NM_152808:exon14:c.A1180G:p.K394E"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9983372	CAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	21397582	12A2p6	cell line	sgMsh2	21397582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	134	42	0.313432836	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon12:c.T1294C:p.F432L,Ilf3:NM_001042709:exon12:c.T1294C:p.F432L,Ilf3:NM_001042708:exon13:c.T1333C:p.F445L,Ilf3:NM_001277321:exon13:c.T1333C:p.F445L,Ilf3:NM_010561:exon13:c.T1333C:p.F445L,Ilf3:NM_001277322:exon14:c.T1333C:p.F445L"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	21589965	12A2p6	cell line	sgMsh2	21589965	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	63	30	6	0.2	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon7:c.T706A:p.S236T,Yipf2:NM_138303:exon7:c.T706A:p.S236T,Yipf2:NM_001205157:exon8:c.T706A:p.S236T,Yipf2:NM_001205158:exon8:c.T706A:p.S236T,Yipf2:NM_001359299:exon8:c.T706A:p.S236T"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9956358	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	21635537	12A2p6	cell line	sgMsh2	21635537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	44	184	39	0.211956522	exonic	Smarca4	synonymous SNV	"Smarca4:NM_001174078:exon4:c.T357C:p.G119G,Smarca4:NM_001174079:exon4:c.T357C:p.G119G,Smarca4:NM_001357764:exon4:c.T357C:p.G119G,Smarca4:NM_011417:exon4:c.T357C:p.G119G"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9421652	GTT	synonymous	NA	NA	NA	NA
M3	chr9	21775738	12A2p6	cell line	sgMsh2	21775738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	39	74	24	0.324324324	exonic	Kank2	nonsynonymous SNV	Kank2:NM_145611:exon7:c.A1787G:p.Y596C	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.8791743	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	21935589	12A2p6	cell line	sgMsh2	21935589	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	60	7	2	0.285714286	exonic	Ccdc159	nonsynonymous SNV	"Ccdc159:NM_001164614:exon12:c.T1192A:p.W398R,Ccdc159:NM_025977:exon12:c.T1168A:p.W390R"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9947696	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	21956858	12A2p6	cell line	sgMsh2	21956858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	99	12	1	0.083333333	exonic	Swsap1	nonsynonymous SNV	Swsap1:NM_025870:exon2:c.C425T:p.A142V	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995063	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	21959360	12A2p6	cell line	sgMsh2	21959360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	75	7	0	0	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon8:c.A1223C:p.D408A	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9978873	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	21962265	12A2p6	cell line	sgMsh2	21962265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	23	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon2:c.T187C:p.F63L	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9527374	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	22127235	12A2p6	cell line	sgMsh2	22127235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	83	6	2	0.333333333	exonic	Acp5	nonsynonymous SNV	"Acp5:NM_001102404:exon5:c.T769C:p.Y257H,Acp5:NM_001102405:exon5:c.T769C:p.Y257H,Acp5:NM_007388:exon5:c.T769C:p.Y257H"	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9986984	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	22364010	12A2p6	cell line	sgMsh2	22364010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	148	136	39	0.286764706	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon9:c.T1598G:p.L533R	9qA3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9994705	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	24625670	12A2p6	cell line	sgMsh2	24625670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	114	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.A455G:p.N152S	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998012	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	26780766	12A2p6	cell line	sgMsh2	26780766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	127	0	0	NA	exonic	Glb1l2	nonsynonymous SNV	"Glb1l2:NM_001310768:exon6:c.T559C:p.Y187H,Glb1l2:NM_153803:exon7:c.T607C:p.Y203H"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999096	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	119	27	7	0.259259259	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998532	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M3	chr9	27322853	12A2p6	cell line	sgMsh2	27322853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	68	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384263:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384264:exon10:c.T1261C:p.Y421H"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.668044132	2	0.7767483	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	27323251	12A2p6	cell line	sgMsh2	27323251	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	82	3	0	0	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon11:c.G1411A:p.G471R,Igsf9b:NM_001384263:exon11:c.G1411A:p.G471R,Igsf9b:NM_001384264:exon11:c.G1411A:p.G471R"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9961219	CGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	29	2	1	0.5	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.966686	TCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	77	3	2	0.666666667	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.595244451	2	0.9640691	CGC	synonymous	NA	NA	NA	NA
M3	chr9	32317590	12A2p6	cell line	sgMsh2	32317590	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	34	0	0	NA	exonic	Kcnj5	frameshift deletion	Kcnj5:NM_010605:exon4:c.1250delG:p.G417Afs*63	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3	chr9	35562004	12A2p6	cell line	sgMsh2	35562004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	184	28	5	0.178571429	exonic	Hyls1	nonsynonymous SNV	Hyls1:NM_029762:exon4:c.A115G:p.T39A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999972	GTA	nonsynonymous	AGC	9	AGCAGCAGC	NA
M3	chr9	36743507	12A2p6	cell line	sgMsh2	36743507	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.137	78	390	111	0.284615385	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon13:c.T1463A:p.I488N	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.586679782	2	0.9711256	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	37423188	12A2p6	cell line	sgMsh2	37423188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	32	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon12:c.A1945G:p.T649A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9720747	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	4	2	0.5	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	TAT	synonymous	NA	NA	NA	NA
M3	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	214	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999995	GTA	synonymous	NA	NA	NA	NA
M3	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	125	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.86074917	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr9	38047923	12A2p6	cell line	sgMsh2	38047923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	279	0	0	NA	exonic	Olfr884	nonsynonymous SNV	Olfr884:NM_001011798:exon1:c.T700G:p.S234A	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	9.97E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	124	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998916	AGA	nonsynonymous	NA	NA	NA	NA
M3	chr9	38349215	12A2p6	cell line	sgMsh2	38349215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	407	0	0	NA	exonic	Olfr898	nonsynonymous SNV	Olfr898:NM_146871:exon1:c.C131A:p.T44N	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
M3	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	357	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	1.08E-09	GTT	synonymous	NA	NA	NA	NA
M3	chr9	38368241	12A2p6	cell line	sgMsh2	38368241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	150	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.C694T:p.L232F,Olfr250:NM_207552:exon1:c.C694T:p.L232F"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.999963	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	38430465	12A2p6	cell line	sgMsh2	38430465	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	exonic	Olfr901	nonsynonymous SNV	Olfr901:NM_001011806:exon1:c.A182T:p.Y61F	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	1.41E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	38488319	12A2p6	cell line	sgMsh2	38488319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	93	0	0	NA	exonic	Olfr906	nonsynonymous SNV	Olfr906:NM_146803:exon1:c.T289C:p.C97R	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9990319	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9999878	TTT	synonymous	NA	NA	NA	NA
M3	chr9	38581355	12A2p6	cell line	sgMsh2	38581355	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	230	0	0	NA	exonic	Olfr912	nonsynonymous SNV	Olfr912:NM_146810:exon2:c.C77T:p.P26L	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999998	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	38657680	12A2p6	cell line	sgMsh2	38657680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	130	0	0	NA	exonic	Olfr916	synonymous SNV	Olfr916:NM_146784:exon1:c.T711G:p.A237A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.877878507	1	0.9898788	AAG	synonymous	NA	NA	NA	NA
M3	chr9	38827704	12A2p6	cell line	sgMsh2	38827704	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	81	0	0	NA	exonic	Olfr923	synonymous SNV	Olfr923:NM_146816:exon1:c.C12T:p.Y4Y	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.907854846	1	0.9854155	ACA	synonymous	NA	NA	NA	NA
M3	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	228	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999998	CCT	synonymous	NA	NA	NA	NA
M3	chr9	39184623	12A2p6	cell line	sgMsh2	39184623	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	200	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.T444G:p.I148M	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9999825	TTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	208	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9999993	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	39319155	12A2p6	cell line	sgMsh2	39319155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	226	0	0	NA	exonic	Olfr948	nonsynonymous SNV	Olfr948:NM_001011756:exon1:c.T458G:p.V153G	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	39484525	12A2p6	cell line	sgMsh2	39484525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	200	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A727G:p.T243A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9999988	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	39623642	12A2p6	cell line	sgMsh2	39623642	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	207	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.A518C:p.E173A	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999993	GAG	nonsynonymous	GTGAG	10	GTGAGGTGAG	NA
M3	chr9	39819815	12A2p6	cell line	sgMsh2	39819815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	207	0	0	NA	exonic	Olfr970	nonsynonymous SNV	Olfr970:NM_146611:exon1:c.A175G:p.M59V	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.882160841	1	0.9986662	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	39839779	12A2p6	cell line	sgMsh2	39839779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	221	0	0	NA	exonic	Olfr971	nonsynonymous SNV	Olfr971:NM_146614:exon1:c.T344C:p.L115S	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.984936861	1	0.9999992	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	39910269	12A2p6	cell line	sgMsh2	39910269	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	172	0	0	NA	exonic	Olfr229	synonymous SNV	Olfr229:NM_146613:exon1:c.A465C:p.G155G	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.865031504	1	0.9923108	GAT	synonymous	NA	NA	NA	NA
M3	chr9	42377887	12A2p6	cell line	sgMsh2	42377887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	56	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon8:c.T1381C:p.C461R,Tecta:NM_009347:exon8:c.T1381C:p.C461R,Tecta:NM_001378602:exon9:c.T1381C:p.C461R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.72799681	1	0.5729904	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	150	98	16	0.163265306	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.800796491	1	0.8121981	CAG	synonymous	NA	NA	NA	NA
M3	chr9	44333095	12A2p6	cell line	sgMsh2	44333095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	71	18	0.253521127	exonic	Dpagt1	nonsynonymous SNV	"Dpagt1:NM_001364464:exon8:c.A879C:p.Q293H,Dpagt1:NM_007875:exon9:c.A1206C:p.Q402H"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998979	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	140	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M3	chr9	44506456	12A2p6	cell line	sgMsh2	44506456	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	60	62	17	0.274193548	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.T1590A:p.D530E,Bcl9l:NM_030256:exon7:c.T1701A:p.D567E"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9615868	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	34	35	4	0.114285714	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9751858	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	44683909	12A2p6	cell line	sgMsh2	44683909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	78	0	0	NA	exonic	Treh	nonsynonymous SNV	"Treh:NM_001277847:exon9:c.C938T:p.A313V,Treh:NM_001277851:exon9:c.C848T:p.A283V,Treh:NM_021481:exon10:c.C1043T:p.A348V"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	GCG	nonsynonymous	NA	NA	NA	NA
M3	chr9	44823374	12A2p6	cell line	sgMsh2	44823374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	172	33	6	0.181818182	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6170G:p.Y2057C	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.796514157	1	0.7712322	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	44848628	12A2p6	cell line	sgMsh2	44848628	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	109	20	5	0.25	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.T1923G:p.I641M	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997307	GAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	45002239	12A2p6	cell line	sgMsh2	45002239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon5:c.A197T:p.H66L	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9927742	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	81	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.946395853	1	0.9943959	TGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	45672814	12A2p6	cell line	sgMsh2	45672814	A	G	SNV	Mutect2;Strelka2	2	0.135	47	2	0	0	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon7:c.A1402G:p.S468G	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.578115114	2	0.8314687	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	45743072	12A2p6	cell line	sgMsh2	45743072	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	39	1	0	0	exonic	Dscaml1	synonymous SNV	Dscaml1:NM_001081270:exon24:c.G4227A:p.G1409G	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.72799681	1	0.6663995	GGG	synonymous	G	5	GGGGG	NA
M3	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	33	11	2	0.181818182	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.973675	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	48394182	12A2p6	cell line	sgMsh2	48394182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A871G:p.S291G	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998342	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	48394198	12A2p6	cell line	sgMsh2	48394198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	107	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A887T:p.N296I	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.999696	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	50541135	12A2p6	cell line	sgMsh2	50541135	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	42	9	0	0	exonic	Bco2	frameshift deletion	"Bco2:NM_001359610:exon6:c.632delA:p.K211Rfs*22,Bco2:NM_133217:exon6:c.632delA:p.K211Rfs*22"	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.80936116	NA	NA	CTT	frameshift	TCTT	9	TCTTTCTTT	-1
M3	chr9	50695511	12A2p6	cell line	sgMsh2	50695511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	142	6	3	0.5	exonic	Dixdc1	nonsynonymous SNV	"Dixdc1:NM_001311069:exon6:c.T804G:p.D268E,Dixdc1:NM_001374656:exon6:c.T729G:p.D243E,Dixdc1:NM_178118:exon6:c.T807G:p.D269E"	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.839337499	1	0.9594864	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	50771879	12A2p6	cell line	sgMsh2	50771879	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	157	13	5	0.384615385	exonic	Fdxacb1	nonsynonymous SNV	Fdxacb1:NM_198675:exon5:c.A1141C:p.I381L	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9998694	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	50895761	12A2p6	cell line	sgMsh2	50895761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	41	20	2	0.1	exonic	Sik2	nonsynonymous SNV	Sik2:NM_178710:exon15:c.A2348G:p.E783G	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9836294	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	51101073	12A2p6	cell line	sgMsh2	51101073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	69	0	0	NA	exonic	Hoatz	synonymous SNV	Hoatz:NM_177702:exon2:c.C246A:p.P82P	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.916419514	1	0.982192	AGG	synonymous	AAAGGG	12	AAAGGGAAAGGG	NA
M3	chr9	53912743	12A2p6	cell line	sgMsh2	53912743	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	130	6	2	0.333333333	exonic	Elmod1	synonymous SNV	Elmod1:NM_177769:exon11:c.G960T:p.S320S	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.75797315	2	0.5592505	CCG	synonymous	NA	NA	NA	NA
M3	chr9	54628565	12A2p6	cell line	sgMsh2	54628565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	91	124	33	0.266129032	exonic	Acsbg1	synonymous SNV	Acsbg1:NM_053178:exon3:c.T285C:p.C95C	9qA5.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	TAC	synonymous	NA	NA	NA	NA
M3	chr9	54865393	12A2p6	cell line	sgMsh2	54865393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	156	94	25	0.265957447	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon2:c.T106C:p.Y36H	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999844	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	55035286	12A2p6	cell line	sgMsh2	55035286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	152	0	0	NA	exonic	Chrnb4	nonsynonymous SNV	Chrnb4:NM_148944:exon5:c.A703G:p.T235A	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9996311	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	55859035	12A2p6	cell line	sgMsh2	55859035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	114	47	5	0.106382979	exonic	Scaper	nonsynonymous SNV	"Scaper:NM_001081341:exon13:c.T1456C:p.S486P,Scaper:NM_001357652:exon13:c.T1438C:p.S480P"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.663761798	2	0.965514	GAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	56042647	12A2p6	cell line	sgMsh2	56042647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	126	208	41	0.197115385	exonic	Rcn2	nonsynonymous SNV	"Rcn2:NM_001278274:exon2:c.A226G:p.I76V,Rcn2:NM_011992:exon2:c.A226G:p.I76V"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.999904	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	704	77	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.149881696	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	128	53	12	0.226415094	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999149	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M3	chr9	56926737	12A2p6	cell line	sgMsh2	56926737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	35	54	15	0.277777778	exonic	Snx33	nonsynonymous SNV	Snx33:NM_175483:exon1:c.A47G:p.K16R	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.976372193	1	0.9699994	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	57961313	12A2p6	cell line	sgMsh2	57961313	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	57	8	0	0	exonic	Sema7a	synonymous SNV	Sema7a:NM_011352:exon14:c.C1707T:p.R569R	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	GCC	synonymous	CGCCA	11	CGCCACGCCAC	NA
M3	chr9	58086545	12A2p6	cell line	sgMsh2	58086545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	67	1	0	0	exonic	Ccdc33	nonsynonymous SNV	"Ccdc33:NM_001311085:exon3:c.A317G:p.E106G,Ccdc33:NM_029212:exon3:c.A317G:p.E106G,Ccdc33:NM_001166282:exon5:c.A1052G:p.E351G"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.989219195	1	0.9957183	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	58362912	12A2p6	cell line	sgMsh2	58362912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	73	0	0	NA	exonic	Tbc1d21	nonsynonymous SNV	"Tbc1d21:NM_001357455:exon6:c.A482G:p.Y161C,Tbc1d21:NM_028854:exon6:c.A482G:p.Y161C"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9974935	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	108	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.612373788	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	100	1577	238	0.150919467	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.86074917	1	0.9666554	GGA	nonsynonymous	NA	NA	NA	NA
M3	chr9	59895380	12A2p6	cell line	sgMsh2	59895380	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	97	40	5	0.125	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon32:c.A6149C:p.K2050T	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9994427	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	60056985	12A2p6	cell line	sgMsh2	60056985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	120	92	34	0.369565217	exonic	Thsd4	nonsynonymous SNV	"Thsd4:NM_172444:exon2:c.A143G:p.N48S,Thsd4:NM_001040426:exon8:c.A1223G:p.N408S"	9qB	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998618	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	64924524	12A2p6	cell line	sgMsh2	64924524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	159	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon10:c.T3290C:p.M1097T	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.999987	CAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	65128477	12A2p6	cell line	sgMsh2	65128477	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	48	17	1	0.058823529	exonic	Igdcc4	nonsynonymous SNV	"Igdcc4:NM_001290315:exon11:c.C1895T:p.A632V,Igdcc4:NM_020043:exon11:c.C1892T:p.A631V"	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9881535	GCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	65398606	12A2p6	cell line	sgMsh2	65398606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	exonic	Rasl12	synonymous SNV	"Rasl12:NM_001033158:exon1:c.G42A:p.P14P,Rasl12:NM_001162923:exon1:c.G42A:p.P14P"	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9976155	CGC	synonymous	NA	NA	NA	NA
M3	chr9	65502263	12A2p6	cell line	sgMsh2	65502263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	45	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon14:c.G1390A:p.G464S	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9871102	CCA	nonsynonymous	NA	NA	NA	NA
M3	chr9	65509652	12A2p6	cell line	sgMsh2	65509652	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	81	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon6:c.G534T:p.K178N	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.91213718	1	0.9868797	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	67898684	12A2p6	cell line	sgMsh2	67898685	TG	CA	DBS	Mutect2;Vardict	2	0.271	114	20	2	0.1	exonic	Vps13c	nonframeshift substitution	Vps13c:NM_177184:exon24:c.2339_2340CA:p.L780P	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	67919278	12A2p6	cell line	sgMsh2	67919278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	93	23	8	0.347826087	exonic	Vps13c	synonymous SNV	Vps13c:NM_177184:exon38:c.T4200C:p.D1400D	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.817925828	1	0.8820676	ATG	synonymous	NA	NA	NA	NA
M3	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	59	25	2	0.08	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.856466836	1	0.9287855	GGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	91	133	54	0.406015038	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9991983	GCT	synonymous	NA	NA	NA	NA
M3	chr9	70341998	12A2p6	cell line	sgMsh2	70341998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	53	108	30	0.277777778	exonic	Myo1e	nonsynonymous SNV	Myo1e:NM_181072:exon14:c.T1379C:p.M460T	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr9	70607522	12A2p6	cell line	sgMsh2	70607522	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.224	44	38	6	0.157894737	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon8:c.A1613G:p.Y538C,Mindy2:NM_172772:exon8:c.A1613G:p.Y538C"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9764097	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	72331408	12A2p6	cell line	sgMsh2	72331408	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	154	37	1	0.027027027	exonic	Zfp280d	frameshift deletion	"Zfp280d:NM_001311105:exon16:c.2005delA:p.A670Pfs*1,Zfp280d:NM_146224:exon16:c.2005delA:p.A670Pfs*2"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3	chr9	72593356	12A2p6	cell line	sgMsh2	72593356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	108	75	20	0.266666667	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon4:c.T397C:p.Y133H	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.890725509	1	0.9891088	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr9	72617068	12A2p6	cell line	sgMsh2	72617068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	116	43	13	0.302325581	exonic	Rfx7	synonymous SNV	Rfx7:NM_001033536:exon9:c.T1539C:p.N513N	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	ATG	synonymous	NA	NA	NA	NA
M3	chr9	74218759	12A2p6	cell line	sgMsh2	74218759	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	113	5	3	0.6	exonic	Wdr72	synonymous SNV	Wdr72:NM_001033500:exon18:c.T3171G:p.S1057S	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9997887	CTT	synonymous	NA	NA	NA	NA
M3	chr9	75337355	12A2p6	cell line	sgMsh2	75337355	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	136	23	6	0.260869565	exonic	Gnb5	nonsynonymous SNV	"Gnb5:NM_138719:exon7:c.A730G:p.S244G,Gnb5:NM_010313:exon9:c.A856G:p.S286G"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.96352519	1	0.9997571	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	75395541	12A2p6	cell line	sgMsh2	75395541	A	G	SNV	Mutect2;MuSe;Vardict	3	0.113	136	157	0	0	exonic	Mapk6	synonymous SNV	"Mapk6:NM_015806:exon3:c.T669C:p.A223A,Mapk6:NM_027418:exon3:c.T669C:p.A223A"	9qD	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.483903762	2	0.8927001	CAG	synonymous	NA	NA	NA	NA
M3	chr9	78064712	12A2p6	cell line	sgMsh2	78064712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	129	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon6:c.T934G:p.Y312D	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999199	CTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	133	21997	5256	0.238941674	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.924984183	1	0.9986268	TTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	78688762	12A2p6	cell line	sgMsh2	78688762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	75	4	1	0.25	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.T2376G:p.F792L	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9978873	TTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	79620062	12A2p6	cell line	sgMsh2	79620062	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	23	40	1	0.025	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon52:c.T7985A:p.V2662D	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9527374	AAC	nonsynonymous	NA	NA	NA	NA
M3	chr9	79697478	12A2p6	cell line	sgMsh2	79697478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	64	11	4	0.363636364	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon11:c.T2087C:p.L696P	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9958915	CAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	80140847	12A2p6	cell line	sgMsh2	80140847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	116	192	50	0.260416667	exonic	Senp6	synonymous SNV	"Senp6:NM_146003:exon20:c.T2907C:p.A969A,Senp6:NM_001311110:exon21:c.T2928C:p.A976A"	9qE1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998239	CTG	synonymous	NA	NA	NA	NA
M3	chr9	82876810	12A2p6	cell line	sgMsh2	82876810	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	45	59	15	0.254237288	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon37:c.T4286C:p.L1429P	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.535291772	2	0.8644278	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	82896115	12A2p6	cell line	sgMsh2	82896115	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	146	67	4	0.059701493	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon24:c.G2796C:p.E932D	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.513880101	2	0.9824521	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	132	6	2	0.333333333	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9885003	ATT	nonsynonymous	NA	NA	NA	NA
M3	chr9	84010263	12A2p6	cell line	sgMsh2	84010263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	156	37	6	0.162162162	exonic	Bckdhb	nonsynonymous SNV	"Bckdhb:NM_001305935:exon7:c.T746C:p.V249A,Bckdhb:NM_199195:exon7:c.T542C:p.V181A"	9qE2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999844	GTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	85697205	12A2p6	cell line	sgMsh2	85697206	TT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	29	64	0	0	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1955_1956del:p.K652Tfs*16,Ibtk:NM_001081282:exon26:c.3635_3636del:p.K1212Tfs*16"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.75797315	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-2
M3	chr9	85743485	12A2p6	cell line	sgMsh2	85743485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	121	44	19	0.431818182	exonic	Ibtk	synonymous SNV	Ibtk:NM_001081282:exon2:c.C211T:p.L71L	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.839337499	1	0.9495371	AGC	synonymous	NA	NA	NA	NA
M3	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	87	66	21	0.318181818	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8665671	TAG	synonymous	NA	NA	NA	NA
M3	chr9	86570353	12A2p6	cell line	sgMsh2	86570353	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	26	6	0.230769231	exonic	Pgm3	nonsynonymous SNV	"Pgm3:NM_001163746:exon2:c.G53T:p.G18V,Pgm3:NM_028352:exon2:c.G53T:p.G18V"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9892312	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	88367345	12A2p6	cell line	sgMsh2	88367345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	57	31	7	0.225806452	exonic	Nt5e	nonsynonymous SNV	Nt5e:NM_011851:exon7:c.A1331G:p.Y444C	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9937324	TAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	88401974	12A2p6	cell line	sgMsh2	88401974	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	145	31	0.213793103	exonic	Snx14	nonsynonymous SNV	"Snx14:NM_001359958:exon15:c.T1394G:p.F465C,Snx14:NM_172926:exon15:c.T1394G:p.F465C"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.937831185	1	0.9952119	AAA	nonsynonymous	NA	NA	NA	NA
M3	chr9	89994768	12A2p6	cell line	sgMsh2	89994768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	46	0	0	NA	exonic	Rasgrf1	nonsynonymous SNV	"Rasgrf1:NM_001357743:exon15:c.C2179T:p.P727S,Rasgrf1:NM_011245:exon15:c.C2185T:p.P729S"	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9878595	ACC	nonsynonymous	NA	NA	NA	NA
M3	chr9	90228938	12A2p6	cell line	sgMsh2	90228938	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	47	32	1	0.03125	exonic	Tbc1d2b	stopgain	Tbc1d2b:NM_194334:exon4:c.G847T:p.G283X	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9874471	CCT	nonsynonymous	AC	10	ACACACACAC	NA
M3	chr9	90249800	12A2p6	cell line	sgMsh2	90249800	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	31	48	22	0.458333333	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon2:c.G505T:p.D169Y	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.933548851	1	0.9454207	TCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	90270491	12A2p6	cell line	sgMsh2	90270491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	17	11	2	0.181818182	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon1:c.A221G:p.Q74R	9qE3.1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9332787	CTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	92352642	12A2p6	cell line	sgMsh2	92352642	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	110	0	0	NA	exonic	1700057G04Rik	frameshift deletion	1700057G04Rik:NM_001033184:exon5:c.429delA:p.I145Lfs*13	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3	chr9	94524392	12A2p6	cell line	sgMsh2	94524392	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	87	49	10	0.204081633	exonic	Dipk2a	nonsynonymous SNV	Dipk2a:NM_001033145:exon2:c.A961C:p.N321H	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989785	CTT	nonsynonymous	TACT	9	TACTTACTT	NA
M3	chr9	95500712	12A2p6	cell line	sgMsh2	95500712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	128	192	54	0.28125	exonic	U2surp	nonsynonymous SNV	"U2surp:NM_001114977:exon3:c.T198G:p.D66E,U2surp:NM_001357974:exon3:c.T198G:p.D66E"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9994008	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	95511823	12A2p6	cell line	sgMsh2	95511823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	123	204	44	0.215686275	exonic	U2surp	synonymous SNV	"U2surp:NM_001114977:exon1:c.T39C:p.S13S,U2surp:NM_001357974:exon1:c.T39C:p.S13S,U2surp:NM_001357975:exon1:c.T39C:p.S13S,U2surp:NM_026476:exon1:c.T39C:p.S13S"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	AAC	synonymous	NA	NA	NA	NA
M3	chr9	95970797	12A2p6	cell line	sgMsh2	95970797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.288	146	41	8	0.195121951	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon6:c.A696G:p.G232G,Xrn1:NM_011916:exon6:c.A696G:p.G232G"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	GAA	synonymous	A	8	AAAAAAAA	NA
M3	chr9	95988981	12A2p6	cell line	sgMsh2	95988981	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	85	37	9	0.243243243	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon16:c.C1858A:p.P620T,Xrn1:NM_011916:exon16:c.C1858A:p.P620T"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9988469	CCC	nonsynonymous	NA	NA	NA	NA
M3	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	87	28	8	0.285714286	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.783667155	1	0.7435187	GAA	nonsynonymous	T	5	TTTTT	NA
M3	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.2014	144	59	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.862462104	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M3	chr9	96340286	12A2p6	cell line	sgMsh2	96340286	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	70	134	26	0.194029851	exonic	Atp1b3	synonymous SNV	"Atp1b3:NM_001357212:exon3:c.C339A:p.S113S,Atp1b3:NM_007502:exon4:c.C447A:p.S149S,Atp1b3:NM_001357213:exon5:c.C276A:p.S92S"	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.950678188	1	0.9917285	AGG	synonymous	CAAG	8	CAAGCAAG	NA
M3	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	47	29	2	0.068965517	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.847902167	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr9	101211534	12A2p6	cell line	sgMsh2	101211534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	122	37	9	0.243243243	exonic	Ppp2r3a	nonsynonymous SNV	Ppp2r3a:NM_001161362:exon2:c.T1589C:p.L530P	9qE4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998776	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	101984182	12A2p6	cell line	sgMsh2	101984182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	101	0	0	NA	exonic	Ephb1	synonymous SNV	Ephb1:NM_173447:exon10:c.C1782T:p.Y594Y	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	TGT	synonymous	NA	NA	NA	NA
M3	chr9	103277478	12A2p6	cell line	sgMsh2	103277478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	45	1	1	1	exonic	1300017J02Rik	nonsynonymous SNV	1300017J02Rik:NM_027918:exon5:c.T613G:p.F205V	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9871102	AAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	103489246	12A2p6	cell line	sgMsh2	103489246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	68	0	0	NA	exonic	Tmem108	synonymous SNV	"Tmem108:NM_001359465:exon4:c.C1545T:p.Y515Y,Tmem108:NM_178638:exon5:c.C1545T:p.Y515Y"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.813643494	1	0.8598213	AGT	synonymous	NA	NA	NA	NA
M3	chr9	104011626	12A2p6	cell line	sgMsh2	104011626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	92	5	0	0	exonic	Nphp3	nonsynonymous SNV	"Nphp3:NM_028721:exon6:c.T971C:p.M324T,Nphp3:NM_172460:exon6:c.T971C:p.M324T"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9992455	ATG	nonsynonymous	NA	NA	NA	NA
M3	chr9	104031988	12A2p6	cell line	sgMsh2	104031988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	51	7	1	0.142857143	exonic	Nphp3	nonsynonymous SNV	Nphp3:NM_028721:exon17:c.T2396G:p.V799G	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.599526785	2	0.8285829	GTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	104060299	12A2p6	cell line	sgMsh2	104060299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	301	86	26	0.302325581	exonic	Uba5	synonymous SNV	Uba5:NM_025692:exon3:c.T210C:p.R70R	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.835055165	1	0.9890966	TAC	synonymous	NA	NA	NA	NA
M3	chr9	104176762	12A2p6	cell line	sgMsh2	104176762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	138	104	16	0.153846154	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon42:c.A4894G:p.M1632V,Dnajc13:NM_001359740:exon43:c.A4909G:p.M1637V"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9996829	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr9	105026705	12A2p6	cell line	sgMsh2	105026705	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon15:c.A1359T:p.Q453H,Cpne4:NM_001378996:exon15:c.A1329T:p.Q443H,Cpne4:NM_028719:exon15:c.A1305T:p.Q435H"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995354	AAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	105774746	12A2p6	cell line	sgMsh2	105774746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	116	0	0	NA	exonic	Col6a6	frameshift deletion	"Col6a6:NM_001102607:exon8:c.3065delT:p.L1022Wfs*14,Col6a6:NM_172927:exon8:c.3065delT:p.L1022Wfs*16"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.822208162	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chr9	105782429	12A2p6	cell line	sgMsh2	105782429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	91	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon5:c.T1316C:p.L439P,Col6a6:NM_172927:exon5:c.T1316C:p.L439P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	105783774	12A2p6	cell line	sgMsh2	105783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	86	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon4:c.T1135C:p.S379P,Col6a6:NM_172927:exon4:c.T1135C:p.S379P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9989147	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	146	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9999714	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr9	106019449	12A2p6	cell line	sgMsh2	106019449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	51	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon29:c.T5166C:p.P1722P	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9910065	CAG	synonymous	NA	NA	NA	NA
M3	chr9	106198718	12A2p6	cell line	sgMsh2	106198718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	58	0	0	NA	exonic	Ppm1m	nonsynonymous SNV	Ppm1m:NM_198931:exon1:c.C10A:p.P4T	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9940991	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	106226140	12A2p6	cell line	sgMsh2	106226140	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	68	0	0	NA	exonic	Tlr9	nonsynonymous SNV	Tlr9:NM_031178:exon2:c.G2629A:p.D877N	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9858744	CGA	nonsynonymous	NA	NA	NA	NA
M3	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	43	70	24	0.342857143	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.895007843	1	0.9437837	TAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	106473724	12A2p6	cell line	sgMsh2	106473724	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	74	22	0.297297297	exonic	Parp3	nonsynonymous SNV	"Parp3:NM_001311150:exon7:c.G968T:p.R323M,Parp3:NM_145619:exon7:c.G953T:p.R318M"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.976612	CCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	107258437	12A2p6	cell line	sgMsh2	107258437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	62	37	7	0.189189189	exonic	Mapkapk3	nonsynonymous SNV	Mapkapk3:NM_178907:exon8:c.C728A:p.P243H	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9953642	GGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	107572247	12A2p6	cell line	sgMsh2	107572247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	49	119	26	0.218487395	exonic	Hyal2	nonsynonymous SNV	Hyal2:NM_010489:exon4:c.A1201G:p.T401A	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9898585	TAC	nonsynonymous	C	5	CCCCC	NA
M3	chr9	107602013	12A2p6	cell line	sgMsh2	107602013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	77	50	19	0.38	exonic	Sema3b	nonsynonymous SNV	"Sema3b:NM_009153:exon8:c.G757A:p.A253T,Sema3b:NM_001291539:exon9:c.G757A:p.A253T,Sema3b:NM_001042779:exon10:c.G757A:p.A253T,Sema3b:NM_001291537:exon10:c.G757A:p.A253T,Sema3b:NM_001291538:exon10:c.G757A:p.A253T"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9981282	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	107705485	12A2p6	cell line	sgMsh2	107705485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	78	31	6	0.193548387	exonic	Sema3f	nonsynonymous SNV	"Sema3f:NM_001311151:exon1:c.A58C:p.T20P,Sema3f:NM_001379496:exon2:c.A58C:p.T20P,Sema3f:NM_011349:exon2:c.A58C:p.T20P"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9982381	GTA	nonsynonymous	NA	NA	NA	NA
M3	chr9	107915316	12A2p6	cell line	sgMsh2	107915316	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	61	8	1	0.125	exonic	Mst1r	frameshift deletion	"Mst1r:NM_001287261:exon2:c.185delT:p.I63Lfs*5,Mst1r:NM_009074:exon12:c.2888delT:p.I964Lfs*5"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3	chr9	107977039	12A2p6	cell line	sgMsh2	107977039	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	200	8	0	0	exonic	Uba7	stopgain	Uba7:NM_023738:exon6:c.A667T:p.K223X	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9999142	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	108068579	12A2p6	cell line	sgMsh2	108068579	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.224	68	17	6	0.352941176	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon13:c.C1007A:p.A336D,Rnf123:NM_032543:exon13:c.C1007A:p.A336D"	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.959242856	1	0.9924302	AGC	nonsynonymous	NA	NA	NA	NA
M3	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	101	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9995627	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	108139239	12A2p6	cell line	sgMsh2	108139239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	90	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon2:c.A572G:p.H191R	9qF1	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.993501529	1	0.9989795	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	108463937	12A2p6	cell line	sgMsh2	108463937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	53	137	37	0.270072993	exonic	Ccdc71	synonymous SNV	"Ccdc71:NM_001378930:exon2:c.A948G:p.K316K,Ccdc71:NM_001378931:exon2:c.A948G:p.K316K,Ccdc71:NM_133744:exon2:c.A948G:p.K316K"	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9920255	AAG	synonymous	NA	NA	NA	NA
M3	chr9	108492730	12A2p6	cell line	sgMsh2	108492730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	148	12	0.081081081	exonic	Usp19	nonsynonymous SNV	"Usp19:NM_001168371:exon2:c.G124A:p.V42M,Usp19:NM_001168372:exon2:c.G124A:p.V42M,Usp19:NM_001168373:exon2:c.G124A:p.V42M,Usp19:NM_027804:exon2:c.G124A:p.V42M,Usp19:NM_145407:exon2:c.G124A:p.V42M"	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9963591	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	55	114	17	0.149122807	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3	chr9	108957078	12A2p6	cell line	sgMsh2	108957078	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	71	0	0	NA	exonic	Col7a1	synonymous SNV	Col7a1:NM_007738:exon12:c.G1452A:p.T484T	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9973089	CGC	synonymous	NA	NA	NA	NA
M3	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	90	7	2	0.285714286	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991482	GTG	synonymous	NA	NA	NA	NA
M3	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	134	280	68	0.242857143	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.954960522	1	0.9996178	GCT	nonsynonymous	NA	NA	NA	NA
M3	chr9	110547379	12A2p6	cell line	sgMsh2	110547379	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	95	68	14	0.205882353	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T261A:p.N87K	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.710867474	2	0.754872	ATA	nonsynonymous	NA	NA	NA	NA
M3	chr9	110551221	12A2p6	cell line	sgMsh2	110551221	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	75	119	5	0.042016807	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon3:c.4103delA:p.N1370Mfs*2	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3	chr9	110622110	12A2p6	cell line	sgMsh2	110622110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	91	6	5	0.833333333	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A189G:p.T63T	9qF2	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9991983	CTG	synonymous	NA	NA	NA	NA
M3	chr9	112182812	12A2p6	cell line	sgMsh2	112182812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	60	0	0	NA	exonic	Arpp21	stoploss	"Arpp21:NM_001177615:exon5:c.A267G:p.X89W,Arpp21:NM_001362008:exon5:c.A267G:p.X89W,Arpp21:NM_001362009:exon5:c.A267G:p.X89W,Arpp21:NM_001362000:exon6:c.A267G:p.X89W,Arpp21:NM_001362001:exon6:c.A267G:p.X89W,Arpp21:NM_001362002:exon6:c.A267G:p.X89W,Arpp21:NM_001362005:exon6:c.A267G:p.X89W,Arpp21:NM_001362006:exon6:c.A267G:p.X89W,Arpp21:NM_001362007:exon6:c.A267G:p.X89W,Arpp21:NM_028755:exon6:c.A267G:p.X89W,Arpp21:NM_001177620:exon7:c.A267G:p.X89W,Arpp21:NM_001362003:exon7:c.A267G:p.X89W,Arpp21:NM_001362004:exon7:c.A267G:p.X89W"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.873596172	1	0.9479604	CTC	nonsynonymous	NA	NA	NA	NA
M3	chr9	118484791	12A2p6	cell line	sgMsh2	118484791	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	51	7	1	0.142857143	exonic	Eomes	nonsynonymous SNV	"Eomes:NM_001164789:exon6:c.A1846T:p.I616F,Eomes:NM_010136:exon6:c.A1903T:p.I635F"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.715149808	1	0.551937	GAT	nonsynonymous	NA	NA	NA	NA
M3	chr9	118530314	12A2p6	cell line	sgMsh2	118530314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	168	80	7	0.0875	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon5:c.A581G:p.K194R	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.929266517	1	0.9997032	AAG	nonsynonymous	A	5	AAAAA	NA
M3	chr9	118557612	12A2p6	cell line	sgMsh2	118557612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	74	85	27	0.317647059	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon15:c.A3801G:p.Q1267Q	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9977555	AAT	synonymous	NA	NA	NA	NA
M3	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9904495	GTG	nonsynonymous	NA	NA	NA	NA
M3	chr9	119428424	12A2p6	cell line	sgMsh2	119428424	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	54	3	1	0.333333333	exonic;splicing	Acvr2b;Acvr2b	nonsynonymous SNV	Acvr2b:NM_007397:exon4:c.G594T:p.Q198H	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9924912	AGG	nonsynonymous	NA	NA	NA	NA
M3	chr9	119664827	12A2p6	cell line	sgMsh2	119664827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	133	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1412G:p.D471G,Scn10a:NM_009134:exon11:c.A1412G:p.D471G"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.920701848	1	0.9983628	ATC	nonsynonymous	NA	NA	NA	NA
M3	chr9	119664849	12A2p6	cell line	sgMsh2	119664849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	123	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1390G:p.R464G,Scn10a:NM_009134:exon11:c.A1390G:p.R464G"	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9998848	CTT	nonsynonymous	NA	NA	NA	NA
M3	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	41	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	1	1	0.9836294	CCC	synonymous	NA	NA	NA	NA
M3	chr9	119958066	12A2p6	cell line	sgMsh2	119958066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon16:c.A2138G:p.E713G	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.770820152	1	0.6399902	GAG	nonsynonymous	NA	NA	NA	NA
M3	chr9	121763706	12A2p6	cell line	sgMsh2	121763706	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.444	7	10	0	0	exonic	Zfp651	nonsynonymous SNV	Zfp651:NM_001166644:exon2:c.A1091G:p.E364G	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.8822421	GAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
M3	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	97	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	1	0.997783864	1	0.9994044	GAT	synonymous	NA	NA	NA	NA
M3	chr9	123640590	12A2p6	cell line	sgMsh2	123640590	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	64	0	0	NA	exonic	Slc6a20a	nonsynonymous SNV	Slc6a20a:NM_139142:exon9:c.T1441A:p.C481S	9qF4	chr9-4330518-124127055	4	2	2	0.96	4.111040811	NA	2	1	1	0.9958915	CAC	nonsynonymous	NA	NA	NA	NA
M3	chrX	6083272	12A2p6	cell line	sgMsh2	6083272	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	11	0	0	NA	exonic	Ezhip	synonymous SNV	"Ezhip:NM_001033211:exon1:c.T51G:p.T17T,Ezhip:NM_001166433:exon1:c.T51G:p.T17T"	XqA1.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M3	chrX	7560150	12A2p6	cell line	sgMsh2	7560150	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	62	6	0	0	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon4:c.G1871C:p.S624T,Ppp1r3f:NM_138605:exon4:c.G1868C:p.S623T"	XqA1.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GCT	nonsynonymous	CTAGAG	13	CTAGAGCTAGAGC	NA
M3	chrX	9063657	12A2p6	cell line	sgMsh2	9063657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	152	0	0	NA	exonic	Fthl17f	nonsynonymous SNV	Fthl17f:NM_001038697:exon1:c.A491G:p.N164S	XqA1.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3	chrX	16724679	12A2p6	cell line	sgMsh2	16724679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	80	7	1	0.142857143	exonic	Maob	nonsynonymous SNV	Maob:NM_172778:exon9:c.A1006G:p.T336A	XqA1.2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	23315137	12A2p6	cell line	sgMsh2	23315137	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.5	8	48	33	0.6875	exonic	Klhl13	nonsynonymous SNV	"Klhl13:NM_001381896:exon2:c.C43T:p.R15C,Klhl13:NM_001381891:exon3:c.C43T:p.R15C,Klhl13:NM_001381892:exon3:c.C43T:p.R15C,Klhl13:NM_026167:exon3:c.C43T:p.R15C,Klhl13:NM_001381895:exon4:c.C43T:p.R15C"	XqA2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
M3	chrX	38631186	12A2p6	cell line	sgMsh2	38631186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	98	79	42	0.53164557	exonic	C1galt1c1	nonsynonymous SNV	C1galt1c1:NM_021550:exon2:c.A932C:p.N311T	XqA3.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M3	chrX	41826130	12A2p6	cell line	sgMsh2	41826130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	49	83	40	0.481927711	exonic	Thoc2	nonsynonymous SNV	Thoc2:NM_001033422:exon24:c.G2789A:p.R930H	XqA4	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
M3	chrX	42578249	12A2p6	cell line	sgMsh2	42578249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	41	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon25:c.A4451G:p.N1484S	XqA4	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	44367716	12A2p6	cell line	sgMsh2	44367716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.637	34	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.A295G:p.T99A	XqA4	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M3	chrX	47884197	12A2p6	cell line	sgMsh2	47884197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	60	49	23	0.469387755	exonic	Smarca1	nonsynonymous SNV	"Smarca1:NM_001290708:exon3:c.G280A:p.D94N,Smarca1:NM_001358618:exon3:c.G265A:p.D89N,Smarca1:NM_001358619:exon3:c.G280A:p.D94N,Smarca1:NM_053123:exon3:c.G280A:p.D94N"	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M3	chrX	48876311	12A2p6	cell line	sgMsh2	48876311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.604	32	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon3:c.A295G:p.S99G	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	49683769	12A2p6	cell line	sgMsh2	49683769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	80	0	0	NA	exonic	Olfr1320	nonsynonymous SNV	Olfr1320:NM_207240:exon1:c.T266C:p.L89S	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M3	chrX	53737717	12A2p6	cell line	sgMsh2	53737717	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.532	51	0	0	NA	exonic	Ct55	frameshift deletion	Ct55:NM_029142:exon5:c.571delT:p.F192Sfs*38	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3	chrX	53751521	12A2p6	cell line	sgMsh2	53751521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	36	0	0	NA	exonic	1700013H16Rik	nonsynonymous SNV	1700013H16Rik:NM_001200013:exon2:c.A323C:p.Q108P	XqA5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	56362784	12A2p6	cell line	sgMsh2	56362784	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.538	45	25	13	0.52	exonic	Zfp449	frameshift deletion	"Zfp449:NM_001359276:exon4:c.356delA:p.K121Nfs*7,Zfp449:NM_030139:exon5:c.716delA:p.K241Nfs*7"	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M3	chrX	56547141	12A2p6	cell line	sgMsh2	56547141	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.597	69	0	0	NA	exonic	Gm648	nonsynonymous SNV	Gm648:NM_001033372:exon2:c.C107A:p.A36D	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M3	chrX	58031593	12A2p6	cell line	sgMsh2	58031593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	14	0	0	NA	exonic	Zic3	nonsynonymous SNV	Zic3:NM_009575:exon1:c.T413C:p.L138P	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	59250947	12A2p6	cell line	sgMsh2	59250947	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.433	21	0	0	NA	exonic	Fgf13	frameshift insertion	Fgf13:NM_001290414:exon3:c.68dupC:p.G24Wfs*27	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
M3	chrX	60127042	12A2p6	cell line	sgMsh2	60127042	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.423	32	0	0	NA	exonic	Mcf2	frameshift insertion	"Mcf2:NM_001358998:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001358999:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001289730:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_133197:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_001289731:exon10:c.1329dupA:p.L444Tfs*5"	XqA6	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGT	frameshift	T	5	TTTTT	1
M3	chrX	64271265	12A2p6	cell line	sgMsh2	64271265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	72	0	0	NA	exonic	Slitrk4	nonsynonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1795G:p.T599A,Slitrk4:NM_178740:exon3:c.A1795G:p.T599A,Slitrk4:NM_001365111:exon4:c.A1795G:p.T599A"	XqA7.1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3	chrX	69844125	12A2p6	cell line	sgMsh2	69844125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	42	4	4	1	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon12:c.G2769T:p.K923N	XqA7.2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M3	chrX	72257609	12A2p6	cell line	sgMsh2	72257609	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	30	4	3	0.75	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon9:c.A2594C:p.K865T	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	73353502	12A2p6	cell line	sgMsh2	73353502	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.476	20	15	0	0	exonic	Zfp275	frameshift insertion	"Zfp275:NM_001160229:exon5:c.254dupG:p.V87Gfs*4,Zfp275:NM_031494:exon6:c.620dupG:p.V209Gfs*4"	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
M3	chrX	73769419	12A2p6	cell line	sgMsh2	73769419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	35	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon26:c.A4657G:p.T1553A	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	C	5	CCCCC	NA
M3	chrX	74313222	12A2p6	cell line	sgMsh2	74313222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	18	45	24	0.533333333	exonic	Fam50a	nonsynonymous SNV	Fam50a:NM_138607:exon1:c.A8G:p.Q3R	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M3	chrX	74331088	12A2p6	cell line	sgMsh2	74331088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	57	2	0	0	exonic	Plxna3	synonymous SNV	"Plxna3:NM_001358129:exon2:c.T93C:p.D31D,Plxna3:NM_008883:exon2:c.T93C:p.D31D"	XqA7.3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
M3	chrX	79302800	12A2p6	cell line	sgMsh2	79302800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.498	56	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon60:c.A8636G:p.Y2879C	XqB	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3	chrX	79493800	12A2p6	cell line	sgMsh2	79493800	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	37	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon11:c.T1794C:p.D598D	XqB	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
M3	chrX	86251227	12A2p6	cell line	sgMsh2	86251227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	154	0	0	NA	exonic	Mageb4	synonymous SNV	Mageb4:NM_001033492:exon3:c.C1195T:p.L399L	XqC1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGT	synonymous	NA	NA	NA	NA
M3	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	50	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M3	chrX	89930894	12A2p6	cell line	sgMsh2	89930894	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	63	0	0	NA	exonic	4930415L06Rik	nonsynonymous SNV	4930415L06Rik:NM_001033880:exon2:c.A1696C:p.M566L	XqC1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	59	17	7	0.411764706	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M3	chrX	94398127	12A2p6	cell line	sgMsh2	94398127	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	226	0	0	NA	exonic	Apoo	synonymous SNV	"Apoo:NM_001199337:exon7:c.T528G:p.T176T,Apoo:NM_001199338:exon7:c.T384G:p.T128T,Apoo:NM_001199339:exon7:c.T384G:p.T128T,Apoo:NM_026673:exon7:c.T486G:p.T162T"	XqC3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M3	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	14	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	43	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3	chrX	101292889	12A2p6	cell line	sgMsh2	101292889	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.618	12	23	5	0.217391304	exonic	Med12	frameshift deletion	Med12:NM_021521:exon37:c.5374delA:p.K1793Nfs*23	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.48	54	62	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3	chrX	103708008	12A2p6	cell line	sgMsh2	103708008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	54	3	2	0.666666667	exonic	Slc16a2	nonsynonymous SNV	Slc16a2:NM_009197:exon3:c.A791G:p.K264R	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	93	2	1	0.5	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M3	chrX	106156739	12A2p6	cell line	sgMsh2	106156739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.538	86	0	0	NA	exonic	Tlr13	frameshift deletion	Tlr13:NM_205820:exon3:c.81delT:p.F30Sfs*3	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M3	chrX	108778381	12A2p6	cell line	sgMsh2	108778381	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	72	29	16	0.551724138	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon18:c.A1910T:p.Q637L	XqD	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	112515199	12A2p6	cell line	sgMsh2	112515199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	72	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon4:c.A382G:p.S128G,2010106E10Rik:NM_026333:exon4:c.A382G:p.S128G"	XqE1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3	chrX	120401646	12A2p6	cell line	sgMsh2	120401646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	66	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.T2785C:p.F929L,Pcdh11x:NM_001271810:exon3:c.T2785C:p.F929L"	XqE2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	TTT	nonsynonymous	CTA	8	CTACTACT	NA
M3	chrX	122395485	12A2p6	cell line	sgMsh2	122395485	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	65	2	1	0.5	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1535T:p.D512V	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M3	chrX	126814960	12A2p6	cell line	sgMsh2	126814960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	66	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.G521A:p.R174K	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M3	chrX	127060561	12A2p6	cell line	sgMsh2	127060561	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.612	44	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.G368T:p.G123V	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M3	chrX	127063090	12A2p6	cell line	sgMsh2	127063090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	54	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.T2897C:p.L966P	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	44	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3	chrX	134721417	12A2p6	cell line	sgMsh2	134721417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	42	65	31	0.476923077	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.T1267C:p.L423L,Armcx1:NM_001166379:exon4:c.T1267C:p.L423L,Armcx1:NM_001166380:exon5:c.T1267C:p.L423L,Armcx1:NM_001166377:exon6:c.T1267C:p.L423L,Armcx1:NM_030066:exon6:c.T1267C:p.L423L"	XqE3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M3	chrX	135659037	12A2p6	cell line	sgMsh2	135659037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	66	0	0	NA	exonic	Tcp11x2	synonymous SNV	Tcp11x2:NM_027952:exon7:c.T897C:p.L299L	XqF1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M3	chrX	138988778	12A2p6	cell line	sgMsh2	138988778	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	66	17	5	0.294117647	exonic	Nrk	synonymous SNV	Nrk:NM_013724:exon20:c.A3297C:p.P1099P	XqF1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M3	chrX	140028155	12A2p6	cell line	sgMsh2	140028155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	60	0	0	NA	exonic	Nup62cl	nonsynonymous SNV	Nup62cl:NM_001081668:exon4:c.A346T:p.I116F	XqF1	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M3	chrX	141724864	12A2p6	cell line	sgMsh2	141724864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	34	0	0	NA	exonic	Irs4	nonsynonymous SNV	Irs4:NM_010572:exon1:c.A335G:p.Y112C	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3	chrX	143101201	12A2p6	cell line	sgMsh2	143101201	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	82	0	0	NA	exonic	Rtl9	synonymous SNV	Rtl9:NM_001040434:exon1:c.C1608A:p.T536T	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M3	chrX	143735268	12A2p6	cell line	sgMsh2	143735268	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	52	0	0	NA	exonic	Pak3	synonymous SNV	"Pak3:NM_001195047:exon7:c.C675G:p.R225R,Pak3:NM_008778:exon7:c.C612G:p.R204R,Pak3:NM_001195046:exon8:c.C720G:p.R240R,Pak3:NM_001195048:exon8:c.C657G:p.R219R,Pak3:NM_001195049:exon10:c.C612G:p.R204R"	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M3	chrX	144481235	12A2p6	cell line	sgMsh2	144481235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	61	0	0	NA	exonic	Trpc5	nonsynonymous SNV	Trpc5:NM_009428:exon3:c.A625G:p.I209V	XqF2	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3	chrX	151233083	12A2p6	cell line	sgMsh2	151233083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	25	3	3	1	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon7:c.T1534C:p.Y512H,Wnk3:NM_001271679:exon7:c.T1534C:p.Y512H"	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	53	9	5	0.555555556	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3	chrX	152061792	12A2p6	cell line	sgMsh2	152061792	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.403	78	126	48	0.380952381	exonic	Smc1a	frameshift deletion	Smc1a:NM_019710:exon25:c.3685delA:p.N1229Tfs*46	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CAA	frameshift	CCAACC	16	CCAACCCCAACCCCAA	-1
M3	chrX	152339886	12A2p6	cell line	sgMsh2	152339886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	67	62	24	0.387096774	exonic	Tspyl2	synonymous SNV	"Tspyl2:NM_001358369:exon4:c.C1098A:p.L366L,Tspyl2:NM_029836:exon4:c.C1098A:p.L366L"	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GGA	synonymous	NA	NA	NA	NA
M3	chrX	155623097	12A2p6	cell line	sgMsh2	155623097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	29	9	2	0.222222222	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon1:c.A214G:p.S72G	XqF3	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	164422992	12A2p6	cell line	sgMsh2	164422992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	34	13	4	0.307692308	exonic	Piga	nonsynonymous SNV	Piga:NM_011081:exon2:c.T347C:p.I116T	XqF5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3	chrX	166400997	12A2p6	cell line	sgMsh2	166400997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	20	6	0.3	exonic	Ofd1	nonsynonymous SNV	Ofd1:NM_177429:exon19:c.A2564G:p.H855R	XqF5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3	chrX	167479139	12A2p6	cell line	sgMsh2	167479139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	40	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001290428:exon15:c.A1873G:p.S625G,Frmpd4:NM_001359072:exon15:c.A1984G:p.S662G,Frmpd4:NM_001368936:exon15:c.A1993G:p.S665G,Frmpd4:NM_001290427:exon16:c.A1969G:p.S657G,Frmpd4:NM_001369234:exon17:c.A2047G:p.S683G,Frmpd4:NM_001033330:exon18:c.A1969G:p.S657G"	XqF5	NA	NA	NA	NA	0.96	4.111040811	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	3216056	12A2p6	cell line	sgMsh2	3216056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	121	0	0	NA	exonic	Xkr4	nonsynonymous SNV	Xkr4:NM_001011874:exon3:c.T1910G:p.I637S	1qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	4346756	12A2p6	cell line	sgMsh2	4346756	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	198	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C4132A:p.L1378I	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.770483479	2	0.5830798	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	4346883	12A2p6	cell line	sgMsh2	4346883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	394	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.T4005C:p.T1335T	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr1	5589057	12A2p6	cell line	sgMsh2	5589057	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon2:c.C9T:p.S3S,Oprk1:NM_011011:exon2:c.C9T:p.S3S"	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9991499	CCC	synonymous	C	5	CCCCC	NA
M3_p20	chr1	5598941	12A2p6	cell line	sgMsh2	5598941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	170	0	0	NA	exonic	Oprk1	synonymous SNV	"Oprk1:NM_001204371:exon3:c.A609G:p.E203E,Oprk1:NM_011011:exon3:c.A609G:p.E203E"	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9997287	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr1	5598942	12A2p6	cell line	sgMsh2	5598942	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	170	0	0	NA	exonic	Oprk1	nonsynonymous SNV	"Oprk1:NM_001204371:exon3:c.G610A:p.D204N,Oprk1:NM_011011:exon3:c.G610A:p.D204N"	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999984	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	29	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9767356	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	6263166	12A2p6	cell line	sgMsh2	6263166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	134	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon18:c.T4227C:p.C1409C	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999811	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	6820123	12A2p6	cell line	sgMsh2	6820123	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	76	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon11:c.A1778C:p.K593T,St18:NM_001244693:exon12:c.A1778C:p.K593T,St18:NM_001244692:exon13:c.A1778C:p.K593T"	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9924447	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	7169594	12A2p6	cell line	sgMsh2	7169594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	28	0	0	NA	exonic	Pcmtd1	nonsynonymous SNV	Pcmtd1:NM_183028:exon6:c.G786T:p.E262D	1qA1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9751391	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	239	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.650925698	2	0.999974	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	10037740	12A2p6	cell line	sgMsh2	10037740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	75	0	0	NA	exonic	Cops5	nonsynonymous SNV	Cops5:NM_013715:exon1:c.A73G:p.I25V	1qA2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9989577	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	11185964	12A2p6	cell line	sgMsh2	11185964	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	221	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon29:c.T3558G:p.G1186G	1qA2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	5.19E-08	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr1	13125490	12A2p6	cell line	sgMsh2	13125490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	84	0	0	NA	exonic	Prdm14	nonsynonymous SNV	Prdm14:NM_001081209:exon2:c.A346G:p.T116A	1qA3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9994345	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	13167054	12A2p6	cell line	sgMsh2	13167054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon12:c.G2447A:p.S816N,Ncoa2:NM_008678:exon12:c.G2447A:p.S816N"	1qA3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998446	ACT	nonsynonymous	ACTG	8	ACTGACTG	NA
M3_p20	chr1	18130241	12A2p6	cell line	sgMsh2	18130241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	325	0	0	NA	exonic	Crisp4	synonymous SNV	"Crisp4:NM_001347048:exon4:c.T219C:p.S73S,Crisp4:NM_001347047:exon5:c.T336C:p.S112S"	1qA3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	1.04E-09	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	19119216	12A2p6	cell line	sgMsh2	19119216	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	exonic	Tfap2d	synonymous SNV	"Tfap2d:NM_001379073:exon4:c.C831T:p.G277G,Tfap2d:NM_001379074:exon5:c.C747T:p.G249G,Tfap2d:NM_153154:exon5:c.C819T:p.G273G"	1qA3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999356	GCC	synonymous	NA	NA	NA	NA
M3_p20	chr1	20523881	12A2p6	cell line	sgMsh2	20523881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	287	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon32:c.T4007C:p.V1336A	1qA4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	1.57E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	20935005	12A2p6	cell line	sgMsh2	20935005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	99	0	0	NA	exonic	Paqr8	nonsynonymous SNV	"Paqr8:NM_001355122:exon3:c.T382G:p.L128V,Paqr8:NM_028829:exon3:c.T382G:p.L128V"	1qA4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	23370041	12A2p6	cell line	sgMsh2	23370041	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	69	0	0	NA	exonic	Ogfrl1	frameshift deletion	"Ogfrl1:NM_001379083:exon5:c.890delA:p.K297Rfs*82,Ogfrl1:NM_001081079:exon7:c.1103delA:p.K368Rfs*82,Ogfrl1:NM_001379082:exon7:c.1106delA:p.K369Rfs*82"	1qA5	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.890041261	NA	NA	CTT	frameshift	C	5	CCCCC	-1
M3_p20	chr1	26683154	12A2p6	cell line	sgMsh2	26683154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	143	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.T2944C:p.C982R	1qA5	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.801479941	1	0.8539908	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	47	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.690778292	2	0.5040094	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	61	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.68192216	2	0.6752453	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	34182130	12A2p6	cell line	sgMsh2	34182130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	124	0	0	NA	exonic	Dst	synonymous SNV	Dst:NM_010081:exon24:c.A7014G:p.E2338E	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.717346688	2	0.8590023	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	34537173	12A2p6	cell line	sgMsh2	34537173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.558	65	0	0	NA	exonic	Cfc1	nonsynonymous SNV	Cfc1:NM_007685:exon4:c.T313C:p.C105R	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9979448	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	36104040	12A2p6	cell line	sgMsh2	36104040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	151	0	0	NA	exonic	Hs6st1	nonsynonymous SNV	Hs6st1:NM_015818:exon2:c.A1055G:p.K352R	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.633213434	2	0.9990288	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	36316314	12A2p6	cell line	sgMsh2	36316314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	28	0	0	NA	exonic	Arid5a	nonsynonymous SNV	"Arid5a:NM_001172205:exon2:c.C110A:p.P37H,Arid5a:NM_001172206:exon2:c.C107A:p.P36H,Arid5a:NM_145996:exon2:c.C110A:p.P37H,Arid5a:NM_001290726:exon3:c.C197A:p.P66H"	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9751391	CCC	nonsynonymous	CCCA	8	CCCACCCA	NA
M3_p20	chr1	36811512	12A2p6	cell line	sgMsh2	36811512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	277	0	0	NA	exonic	Tmem131	synonymous SNV	Tmem131:NM_018872:exon28:c.A3090G:p.E1030E	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	2.13E-09	TTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	37261918	12A2p6	cell line	sgMsh2	37261918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	112	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon6:c.A1718G:p.Y573C,Cnga3:NM_001282010:exon8:c.A1832G:p.Y611C"	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999157	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	37807068	12A2p6	cell line	sgMsh2	37807068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	118	0	0	NA	exonic	Tsga10	nonsynonymous SNV	"Tsga10:NM_001290721:exon12:c.A976G:p.I326V,Tsga10:NM_001290720:exon13:c.A976G:p.I326V,Tsga10:NM_207228:exon13:c.A976G:p.I326V"	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.999944	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	39539904	12A2p6	cell line	sgMsh2	39539904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	316	0	0	NA	exonic	Cnot11	synonymous SNV	Cnot11:NM_028043:exon4:c.A849G:p.P283P	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.712918622	2	0.9995976	CAC	synonymous	CCA	8	CCACCACC	NA
M3_p20	chr1	39672272	12A2p6	cell line	sgMsh2	39672272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	115	0	0	NA	exonic	Rfx8	nonsynonymous SNV	Rfx8:NM_001145660:exon13:c.A1196G:p.K399R	1qB	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9956304	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	44142866	12A2p6	cell line	sgMsh2	44142866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	209	0	0	NA	exonic	Bivm	synonymous SNV	"Bivm:NM_144558:exon10:c.T1233C:p.H411H,Bivm:NM_001357046:exon11:c.T1233C:p.H411H,Bivm:NM_001357047:exon11:c.T1233C:p.H411H,Bivm:NM_001357048:exon11:c.T1233C:p.H411H"	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.766055413	2	0.6833287	ATT	synonymous	TTGCA	11	TTGCATTGCAT	NA
M3_p20	chr1	44142889	12A2p6	cell line	sgMsh2	44142889	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	222	0	0	NA	exonic	Bivm	nonsynonymous SNV	"Bivm:NM_144558:exon10:c.T1256G:p.L419R,Bivm:NM_001357046:exon11:c.T1256G:p.L419R,Bivm:NM_001357047:exon11:c.T1256G:p.L419R,Bivm:NM_001357048:exon11:c.T1256G:p.L419R"	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.70406249	2	0.9964612	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	44206380	12A2p6	cell line	sgMsh2	44206380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	126	0	0	NA	exonic	Mettl21e	synonymous SNV	Mettl21e:NM_207281:exon5:c.A705G:p.K235K	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	44708633	12A2p6	cell line	sgMsh2	44708633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	534	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon3:c.T45C:p.H15H	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	1	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr1	44780994	12A2p6	cell line	sgMsh2	44780994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	507	0	0	NA	exonic	Gulp1	synonymous SNV	Gulp1:NM_028450:exon9:c.T636G:p.P212P	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	45329099	12A2p6	cell line	sgMsh2	45329099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon13:c.G941A:p.G314E	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999313	GGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	45341210	12A2p6	cell line	sgMsh2	45341210	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	97	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon40:c.G2893T:p.G965C	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.72620282	2	0.6758911	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	45402107	12A2p6	cell line	sgMsh2	45402107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	104	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon30:c.A1997G:p.Q666R	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998548	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	46299840	12A2p6	cell line	sgMsh2	46299840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	113	0	0	NA	exonic	Dnah7b	synonymous SNV	Dnah7b:NM_001368717:exon53:c.A9915G:p.L3305L	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.981907	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	46455844	12A2p6	cell line	sgMsh2	46455844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	151	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon4:c.T231C:p.V77V	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.805908007	1	0.880304	TTA	synonymous	A	5	AAAAA	NA
M3_p20	chr1	51769071	12A2p6	cell line	sgMsh2	51769071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	73	0	0	NA	exonic	Myo1b	nonsynonymous SNV	"Myo1b:NM_001161817:exon22:c.A2315G:p.E772G,Myo1b:NM_001290982:exon22:c.A2315G:p.E772G,Myo1b:NM_010863:exon22:c.A2315G:p.E772G"	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9988061	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	52212343	12A2p6	cell line	sgMsh2	52212343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	192	0	0	NA	exonic	Gls	nonsynonymous SNV	"Gls:NM_001081081:exon6:c.T854C:p.V285A,Gls:NM_001113383:exon6:c.T854C:p.V285A"	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	53567158	12A2p6	cell line	sgMsh2	53567158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	185	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3702C:p.V1234V	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	TAA	synonymous	NA	NA	NA	NA
M3_p20	chr1	53567203	12A2p6	cell line	sgMsh2	53567203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	233	0	0	NA	exonic	Dnah7a	synonymous SNV	Dnah7a:NM_001252070:exon24:c.T3657C:p.D1219D	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	2.35E-08	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr1	53761057	12A2p6	cell line	sgMsh2	53761057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	176	0	0	NA	exonic	Stk17b	nonsynonymous SNV	Stk17b:NM_133810:exon7:c.A761G:p.Y254C	1qC1.1	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999989	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	55355724	12A2p6	cell line	sgMsh2	55355724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	138	0	0	NA	exonic	Boll	synonymous SNV	"Boll:NM_001367887:exon3:c.T181C:p.L61L,Boll:NM_001368767:exon3:c.T181C:p.L61L,Boll:NM_029267:exon3:c.T181C:p.L61L"	1qC1.2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9888713	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr1	56891225	12A2p6	cell line	sgMsh2	56891225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	289	0	0	NA	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.A638C:p.N213T,Satb2:NM_001358580:exon7:c.A638C:p.N213T,Satb2:NM_001358581:exon7:c.A638C:p.N213T"	1qC1.3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	1.50E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	58016226	12A2p6	cell line	sgMsh2	58016226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	170	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.T1268C:p.V423A,Sgo2a:NM_199007:exon7:c.T1568C:p.V523A"	1qC1.3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999984	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	70	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9985363	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M3_p20	chr1	58476438	12A2p6	cell line	sgMsh2	58476438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	571	0	0	NA	exonic	Orc2	synonymous SNV	"Orc2:NM_001025378:exon8:c.T766C:p.L256L,Orc2:NM_001271526:exon11:c.T910C:p.L304L,Orc2:NM_008765:exon11:c.T910C:p.L304L"	1qC1.3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	1.00E-09	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	123	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999601	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	60978008	12A2p6	cell line	sgMsh2	60978008	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	118	0	0	NA	exonic	Icos	frameshift deletion	Icos:NM_017480:exon1:c.50delT:p.L18fs*0	1qC2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr1	63585429	12A2p6	cell line	sgMsh2	63585429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	133	0	0	NA	exonic	Adam23	synonymous SNV	Adam23:NM_011780:exon25:c.C2415T:p.V805V	1qC2	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.779339611	1	0.6808398	TCC	synonymous	NA	NA	NA	NA
M3_p20	chr1	66505052	12A2p6	cell line	sgMsh2	66505052	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	116	0	0	NA	exonic	Unc80	frameshift deletion	"Unc80:NM_001368824:exon9:c.1333delA:p.K446Sfs*38,Unc80:NM_001368825:exon9:c.1333delA:p.K446Sfs*38,Unc80:NM_175510:exon9:c.1333delA:p.K446Sfs*38"	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	T	5	TTTTT	-1
M3_p20	chr1	70461128	12A2p6	cell line	sgMsh2	70461128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	314	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon6:c.T627C:p.P209P,Spag16:NM_029160:exon15:c.T1614C:p.P538P"	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	1.57E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr1	71102736	12A2p6	cell line	sgMsh2	71102736	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	14	0	0	NA	exonic	Bard1	synonymous SNV	Bard1:NM_007525:exon1:c.C72A:p.T24T	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9378643	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr1	74191855	12A2p6	cell line	sgMsh2	74191855	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	196	0	0	NA	exonic	Cxcr1	stopgain	Cxcr1:NM_178241:exon2:c.1007delT:p.L336fs*0	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.863472865	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
M3_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	210	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.721774754	2	0.9814059	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	74571416	12A2p6	cell line	sgMsh2	74571416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	65	0	0	NA	exonic	Zfp142	synonymous SNV	"Zfp142:NM_001310668:exon7:c.G3219A:p.E1073E,Zfp142:NM_029888:exon7:c.G2910A:p.E970E"	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.721774754	2	5.06E-06	ACT	synonymous	NA	NA	NA	NA
M3_p20	chr1	74594618	12A2p6	cell line	sgMsh2	74594618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.41	173	0	0	NA	exonic	Rnf25	frameshift deletion	"Rnf25:NM_001305230:exon9:c.731delA:p.K244Rfs*30,Rnf25:NM_021313:exon9:c.734delA:p.K245Rfs*30"	1qC3	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	323	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	1.05E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	75274470	12A2p6	cell line	sgMsh2	75274470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	226	0	0	NA	exonic	Resp18	nonsynonymous SNV	Resp18:NM_009049:exon3:c.A271G:p.S91G	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9997463	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	75402461	12A2p6	cell line	sgMsh2	75402461	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	109	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001173477:exon4:c.C322A:p.L108M,Speg:NM_001085370:exon7:c.C679A:p.L227M,Speg:NM_007463:exon9:c.C2884A:p.L962M,Speg:NM_001085371:exon10:c.C2566A:p.L856M"	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998967	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	75411103	12A2p6	cell line	sgMsh2	75411103	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	82	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon15:c.C1982A:p.A661D,Speg:NM_007463:exon17:c.C4187A:p.A1396D"	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9993522	GCT	nonsynonymous	TGCTG	10	TGCTGTGCTG	NA
M3_p20	chr1	77374917	12A2p6	cell line	sgMsh2	77374917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	76	0	0	NA	exonic	Epha4	synonymous SNV	Epha4:NM_007936:exon16:c.A2700G:p.T900T	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990262	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	78443700	12A2p6	cell line	sgMsh2	78443700	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	168	0	0	NA	exonic	Farsb	nonsynonymous SNV	"Farsb:NM_001278075:exon16:c.T1553G:p.I518S,Farsb:NM_011811:exon16:c.T1553G:p.I518S"	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	79435569	12A2p6	cell line	sgMsh2	79435569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	92	0	0	NA	exonic	Scg2	nonsynonymous SNV	"Scg2:NM_009129:exon2:c.A1436C:p.Q479P,Scg2:NM_001310680:exon3:c.A1316C:p.Q439P"	1qC4	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9996717	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	82493576	12A2p6	cell line	sgMsh2	82493576	G	-	Deletion	Strelka2;Vardict	2	0.0962	52	0	0	NA	exonic	Col4a4	frameshift deletion	Col4a4:NM_007735:exon27:c.2057delC:p.P686Qfs*5	1qC5	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	1	0.425979947	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr1	84159243	12A2p6	cell line	sgMsh2	84159243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	166	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon2:c.A166G:p.S56G	1qC5	chr1-3216742-84929848	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999979	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	85248322	12A2p6	cell line	sgMsh2	85248322	T	-	Deletion	Strelka2;Vardict	2	0.197	203	0	0	NA	exonic	C130026I21Rik	frameshift deletion	"C130026I21Rik:NM_001037909:exon6:c.569delA:p.K190Sfs*6,C130026I21Rik:NM_175219:exon7:c.653delA:p.K218Sfs*6"	1qC5	chr1-85027661-85662926	6.32874023	4.32874023	2	0.91	4.029540036	NA	1	0.872328997	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr1	85550229	12A2p6	cell line	sgMsh2	85550229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	263	0	0	NA	exonic	Gm7592	synonymous SNV	Gm7592:NM_001378663:exon2:c.A543G:p.R181R	1qC5	chr1-85027661-85662926	6.32874023	4.32874023	2	0.91	4.029540036	NA	2	1	1	3.93E-09	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr1	85550474	12A2p6	cell line	sgMsh2	85550474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	99	0	0	NA	exonic	Gm7592	nonsynonymous SNV	Gm7592:NM_001378663:exon2:c.C788A:p.A263D	1qC5	chr1-85027661-85662926	6.32874023	4.32874023	2	0.91	4.029540036	NA	1	0.68192216	2	0.09212514	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	86075859	12A2p6	cell line	sgMsh2	86075859	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	244	0	0	NA	exonic	Psmd1	frameshift deletion	Psmd1:NM_027357:exon5:c.365delA:p.K124Sfs*10	1qC5	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.969746448	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr1	86110599	12A2p6	cell line	sgMsh2	86110599	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	359	0	0	NA	exonic	Htr2b	stopgain	Htr2b:NM_008311:exon2:c.T284A:p.L95X	1qC5	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.805908007	1	0.9098752	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	87194891	12A2p6	cell line	sgMsh2	87194891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	230	0	0	NA	exonic	Chrnd	synonymous SNV	Chrnd:NM_021600:exon7:c.C720A:p.T240T	1qC5	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	2.86E-08	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr1	87407650	12A2p6	cell line	sgMsh2	87407650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	162	0	0	NA	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon12:c.A1194G:p.E398E,Gigyf2:NM_146112:exon12:c.A1212G:p.E404E"	1qC5	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.65978183	2	0.9977527	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	87982016	12A2p6	cell line	sgMsh2	87982016	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	182	0	0	NA	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon13:c.T1715A:p.I572K,Usp40:NM_001198573:exon13:c.T1715A:p.I572K"	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.894469327	1	0.999481	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	88228246	12A2p6	cell line	sgMsh2	88228246	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	1776	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C99A:p.T33T	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.301108486	3	1	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	424	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.256827826	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	88249779	12A2p6	cell line	sgMsh2	88249779	C	-	Deletion	Mutect2;Vardict	2	0.056	464	0	0	NA	exonic	Mroh2a	frameshift deletion	Mroh2a:NM_001281466:exon28:c.3023delC:p.R1009Afs*11	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.247971695	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3_p20	chr1	88265701	12A2p6	cell line	sgMsh2	88265701	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	530	0	0	NA	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon5:c.G1256T:p.R419M,Hjurp:NM_198652:exon8:c.G1484T:p.R495M"	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.163838441	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	91319076	12A2p6	cell line	sgMsh2	91319076	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	158	0	0	NA	exonic	Scly	nonsynonymous SNV	Scly:NM_016717:exon11:c.A1108T:p.S370C	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	2	1	1	0.9999963	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	91370451	12A2p6	cell line	sgMsh2	91370451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	147	0	0	NA	exonic	Erfe	synonymous SNV	Erfe:NM_173395:exon5:c.T682C:p.L228L	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.743915084	2	0.7562049	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	92573497	12A2p6	cell line	sgMsh2	92573497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	293	0	0	NA	exonic	Olfr1413	nonsynonymous SNV	Olfr1413:NM_147037:exon1:c.T325C:p.F109L	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.841332535	1	0.9968792	CTT	nonsynonymous	TTC	8	TTCTTCTT	NA
M3_p20	chr1	92588592	12A2p6	cell line	sgMsh2	92588592	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	223	0	0	NA	exonic	Olfr1412	nonsynonymous SNV	Olfr1412:NM_146277:exon1:c.A261C:p.K87N	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	4.54E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	93282827	12A2p6	cell line	sgMsh2	93282827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	43	0	0	NA	exonic	Sned1	nonsynonymous SNV	Sned1:NM_172463:exon21:c.G2849A:p.G950E	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.690778292	1	0.5336062	GGA	nonsynonymous	GGAT	8	GGATGGAT	NA
M3_p20	chr1	93335703	12A2p6	cell line	sgMsh2	93335703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	137	0	0	NA	exonic	Pask	synonymous SNV	Pask:NM_080850:exon3:c.T330C:p.R110R	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.952034184	1	0.9998538	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	289	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.903325459	1	0.9999928	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr1	93408178	12A2p6	cell line	sgMsh2	93408178	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.138	41	0	0	NA	exonic	Hdlbp	stopgain	"Hdlbp:NM_001301364:exon28:c.C3802T:p.R1268X,Hdlbp:NM_001357556:exon28:c.C3802T:p.R1268X,Hdlbp:NM_133808:exon28:c.C3802T:p.R1268X"	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.611073104	2	0.7102208	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	93686595	12A2p6	cell line	sgMsh2	93686595	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	34	0	0	NA	exonic	Bok	stopgain	Bok:NM_016778:exon2:c.G149A:p.W50X	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	2	1	1	0.9833297	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	93792853	12A2p6	cell line	sgMsh2	93792853	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	148	0	0	NA	exonic	Dtymk	nonsynonymous SNV	Dtymk:NM_001105667:exon5:c.C619A:p.L207M	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	0.9999927	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	95667162	12A2p6	cell line	sgMsh2	95667162	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	255	0	0	NA	exonic	St8sia4	nonsynonymous SNV	"St8sia4:NM_001159745:exon1:c.A100T:p.T34S,St8sia4:NM_009183:exon1:c.A100T:p.T34S"	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.677494094	2	0.999884	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	98	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.757199282	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr1	97777326	12A2p6	cell line	sgMsh2	97777326	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	66	0	0	NA	exonic	Gin1	frameshift deletion	"Gin1:NM_001310773:exon3:c.140delA:p.K49Sfs*14,Gin1:NM_026250:exon3:c.140delA:p.K49Sfs*14"	1qD	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr1	106004165	12A2p6	cell line	sgMsh2	106004165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	221	0	0	NA	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon3:c.T1096C:p.Y366H,Zcchc2:NM_001122676:exon3:c.T1096C:p.Y366H"	1qE2.1	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	5.19E-08	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	107000780	12A2p6	cell line	sgMsh2	107000780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	260	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon8:c.T1129C:p.S377P	1qE2.1	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	2	1	1	4.59E-09	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	107159045	12A2p6	cell line	sgMsh2	107159045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	128	0	0	NA	exonic	Serpinb3b	synonymous SNV	Serpinb3b:NM_198680:exon3:c.A195G:p.T65T	1qE2.1	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.673066028	2	0.9794381	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	107602840	12A2p6	cell line	sgMsh2	107602840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	326	0	0	NA	exonic	Serpinb8	nonsynonymous SNV	"Serpinb8:NM_001159748:exon4:c.T347C:p.L116P,Serpinb8:NM_011459:exon4:c.T347C:p.L116P"	1qE2.1	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.761627348	2	0.9359759	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	115685184	12A2p6	cell line	sgMsh2	115685184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	665	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon1:c.A48G:p.S16S,Cntnap5a:NM_001371013:exon1:c.A48G:p.S16S"	1qE2.3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.952034184	1	1	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr1	119691821	12A2p6	cell line	sgMsh2	119691821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	174	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon17:c.T1524C:p.G508G	1qE2.3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	0.9999988	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	172	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.832476403	1	0.9732068	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.188	296	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	0.832476403	1	0.9926791	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	115	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-85663222-127999769	4	3	1	0.91	4.029540036	NA	1	1	1	0.9999313	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	128193486	12A2p6	cell line	sgMsh2	128193486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	110	0	0	NA	exonic	R3hdm1	synonymous SNV	"R3hdm1:NM_001357482:exon18:c.T1755C:p.H585H,R3hdm1:NM_181750:exon18:c.T1755C:p.H585H"	1qE3	chr1-128015732-128202745	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr1	128236639	12A2p6	cell line	sgMsh2	128236639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	253	0	0	NA	exonic	R3hdm1	nonsynonymous SNV	"R3hdm1:NM_001357482:exon27:c.T3289C:p.S1097P,R3hdm1:NM_181750:exon27:c.T3289C:p.S1097P"	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.757199282	2	0.8879616	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	128291951	12A2p6	cell line	sgMsh2	128291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	335	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon13:c.A4960G:p.S1654G	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.02E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	128300744	12A2p6	cell line	sgMsh2	128300744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	173	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A3011G:p.N1004S	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.805908007	1	0.8837899	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	128304111	12A2p6	cell line	sgMsh2	128304111	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.158	28	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon7:c.A2000T:p.E667V	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.699634424	1	0.686684	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	128348373	12A2p6	cell line	sgMsh2	128348373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	117	0	0	NA	exonic	Mcm6	nonsynonymous SNV	"Mcm6:NM_001313695:exon7:c.A1074G:p.I358M,Mcm6:NM_008567:exon7:c.A1074G:p.I358M"	1qE3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.99994	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	130655982	12A2p6	cell line	sgMsh2	130655982	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	0	0	NA	exonic	C4bp	nonsynonymous SNV	C4bp:NM_007576:exon3:c.C248T:p.T83I	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.876757063	1	0.9991995	GGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	133266621	12A2p6	cell line	sgMsh2	133266621	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	163	0	0	NA	exonic	Plekha6	synonymous SNV	"Plekha6:NM_001160268:exon6:c.G336A:p.A112A,Plekha6:NM_182930:exon6:c.G336A:p.A112A"	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.673066028	2	0.9955157	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	37	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.960890316	1	0.9778105	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	134879721	12A2p6	cell line	sgMsh2	134879721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	181	0	0	NA	exonic	Ppp1r12b	nonsynonymous SNV	"Ppp1r12b:NM_001368829:exon8:c.A662G:p.N221S,Ppp1r12b:NM_001081307:exon9:c.A1166G:p.N389S,Ppp1r12b:NM_001368827:exon9:c.A1166G:p.N389S"	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999992	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	134999360	12A2p6	cell line	sgMsh2	134999360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	120	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon12:c.A1090G:p.I364V	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999511	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	135301934	12A2p6	cell line	sgMsh2	135301934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	279	0	0	NA	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon6:c.A434G:p.Y145C,Timm17a:NM_001360858:exon6:c.A263G:p.Y88C,Timm17a:NM_011590:exon6:c.A500G:p.Y167C"	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.99E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	138498589	12A2p6	cell line	sgMsh2	138498589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	311	0	0	NA	exonic	Nek7	nonsynonymous SNV	Nek7:NM_021605:exon9:c.A785C:p.H262P	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.11E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	139432013	12A2p6	cell line	sgMsh2	139432013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	326	0	0	NA	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon5:c.T1480C:p.Y494H	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.619929236	2	1.02E-08	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	139456816	12A2p6	cell line	sgMsh2	139456816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	299	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon2:c.T350C:p.L117P	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.25E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	139479633	12A2p6	cell line	sgMsh2	139479633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	137	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T6257C:p.M2086T	1qE4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999846	ATG	nonsynonymous	CACATG	12	CACATGCACATG	NA
M3_p20	chr1	139507581	12A2p6	cell line	sgMsh2	139507581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	348	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon4:c.T463C:p.L155L	1qF	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.01E-09	TTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	139810826	12A2p6	cell line	sgMsh2	139810826	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	462	0	0	NA	exonic	Cfhr2	synonymous SNV	Cfhr2:NM_001025575:exon6:c.A996G:p.V332V	1qF	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr1	140596025	12A2p6	cell line	sgMsh2	140596025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	643	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon27:c.T3262C:p.S1088P	1qF	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	144139554	12A2p6	cell line	sgMsh2	144139554	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	447	0	0	NA	exonic	Rgs13	nonsynonymous SNV	Rgs13:NM_153171:exon6:c.A424C:p.K142Q	1qF	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	TTT	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr1	150723469	12A2p6	cell line	sgMsh2	150723469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	221	0	0	NA	exonic	Hmcn1	synonymous SNV	Hmcn1:NM_001024720:exon31:c.A4695G:p.K1565K	1qG1	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.912181591	1	0.9999608	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	152371857	12A2p6	cell line	sgMsh2	152371857	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	240	0	0	NA	exonic	Tsen15	nonsynonymous SNV	Tsen15:NM_025677:exon4:c.G383A:p.G128D	1qG2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.50E-08	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	152844296	12A2p6	cell line	sgMsh2	152844296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	95	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon17:c.A2473G:p.I825V,Smg7:NM_001160256:exon17:c.A2335G:p.I779V,Smg7:NM_001160257:exon18:c.A2359G:p.I787V,Smg7:NM_001359257:exon18:c.A1330G:p.I444V"	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9997323	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	153458482	12A2p6	cell line	sgMsh2	153458482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	139	0	0	NA	exonic	Dhx9	synonymous SNV	Dhx9:NM_007842:exon25:c.A2928G:p.L976L	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.921037723	1	0.9994236	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr1	153760821	12A2p6	cell line	sgMsh2	153760821	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.379	82	0	0	NA	exonic	Rnasel	frameshift insertion	Rnasel:NM_011882:exon8:c.1947dupA:p.N652Kfs*8	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	AGA	frameshift	A	9	AAAAAAAAA	1
M3_p20	chr1	153850771	12A2p6	cell line	sgMsh2	153850771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	379	0	0	NA	exonic	Teddm2	nonsynonymous SNV	Teddm2:NM_178243:exon1:c.A356G:p.N119S	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	153892064	12A2p6	cell line	sgMsh2	153892064	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	235	0	0	NA	exonic	Teddm1a	nonsynonymous SNV	Teddm1a:NM_178244:exon1:c.T273A:p.F91L	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	2.06E-08	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	156635122	12A2p6	cell line	sgMsh2	156635122	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	343	0	0	NA	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.T1466A:p.I489N,Abl2:NM_009595:exon9:c.T1466A:p.I489N"	1qG3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	158266514	12A2p6	cell line	sgMsh2	158266514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	53	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon4:c.A617C:p.E206A	1qH1	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9953643	CTC	nonsynonymous	CT	8	CTCTCTCT	NA
M3_p20	chr1	162677426	12A2p6	cell line	sgMsh2	162677426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	195	0	0	NA	exonic	Prrc2c	synonymous SNV	Prrc2c:NM_001081290:exon32:c.T7851C:p.S2617S	1qH2.1	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999997	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	162954403	12A2p6	cell line	sgMsh2	162954403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	138	0	0	NA	exonic	Fmo3	synonymous SNV	Fmo3:NM_008030:exon9:c.A1380G:p.E460E	1qH2.1	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.810336073	1	0.8988767	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr1	164161866	12A2p6	cell line	sgMsh2	164161866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	445	0	0	NA	exonic	F5	synonymous SNV	F5:NM_007976:exon3:c.T336C:p.H112H	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	ATC	synonymous	CATC	9	CATCCATCC	NA
M3_p20	chr1	164194057	12A2p6	cell line	sgMsh2	164194057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	211	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon13:c.A4100G:p.Q1367R	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	164257135	12A2p6	cell line	sgMsh2	164257135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	340	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	"Slc19a2:NM_001276455:exon2:c.T593C:p.V198A,Slc19a2:NM_054087:exon2:c.T593C:p.V198A"	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	164257255	12A2p6	cell line	sgMsh2	164257255	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	223	0	0	NA	exonic	Slc19a2	nonsynonymous SNV	Slc19a2:NM_054087:exon2:c.T713G:p.V238G	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.686350226	2	0.9991128	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	164298328	12A2p6	cell line	sgMsh2	164298328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	224	0	0	NA	exonic	Blzf1	synonymous SNV	"Blzf1:NM_001160209:exon5:c.A717G:p.L239L,Blzf1:NM_001160208:exon6:c.A717G:p.L239L,Blzf1:NM_001357052:exon6:c.A636G:p.L212L,Blzf1:NM_025505:exon7:c.A738G:p.L246L"	1qH2.2	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.929893855	1	0.999991	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	270	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.867900931	1	0.9996329	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	168183539	12A2p6	cell line	sgMsh2	168183539	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	321	0	0	NA	exonic	Pbx1	nonsynonymous SNV	"Pbx1:NM_001291509:exon6:c.G918T:p.Q306H,Pbx1:NM_183355:exon8:c.G1191T:p.Q397H"	1qH2.3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.876757063	1	0.9999565	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	169655604	12A2p6	cell line	sgMsh2	169655604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	188	0	0	NA	exonic	Rgs5	synonymous SNV	"Rgs5:NM_001313705:exon1:c.G27A:p.P9P,Rgs5:NM_009063:exon1:c.G27A:p.P9P"	1qH2.3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999995	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr1	169744490	12A2p6	cell line	sgMsh2	169744490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	306	0	0	NA	exonic	Rgs4	nonsynonymous SNV	Rgs4:NM_009062:exon4:c.T239C:p.L80P	1qH2.3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.859044799	1	0.9995906	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	317	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.07E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	171286521	12A2p6	cell line	sgMsh2	171286521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	97	0	0	NA	exonic	Usp21	synonymous SNV	Usp21:NM_013919:exon2:c.A429G:p.A143A	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9997663	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	171460557	12A2p6	cell line	sgMsh2	171460557	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	163	0	0	NA	exonic	F11r	synonymous SNV	F11r:NM_172647:exon3:c.C150A:p.T50T	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999974	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr1	171682100	12A2p6	cell line	sgMsh2	171682100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	194	0	0	NA	exonic	Cd48	nonsynonymous SNV	"Cd48:NM_001360767:exon1:c.T7G:p.F3V,Cd48:NM_007649:exon1:c.T7G:p.F3V"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	172246733	12A2p6	cell line	sgMsh2	172246733	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	173	0	0	NA	exonic	Atp1a4	frameshift deletion	Atp1a4:NM_013734:exon8:c.952delT:p.W318Gfs*36	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr1	172319308	12A2p6	cell line	sgMsh2	172319308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	126	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon6:c.T1736C:p.F579S	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.797051875	1	0.8285019	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	173203796	12A2p6	cell line	sgMsh2	173203796	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.243	416	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.T439C:p.S147P	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	173203798	12A2p6	cell line	sgMsh2	173203798	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.242	417	0	0	NA	exonic	Olfr218	synonymous SNV	Olfr218:NM_001001809:exon1:c.T441C:p.S147S	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	456	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.836904469	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr1	173332911	12A2p6	cell line	sgMsh2	173332911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	222	0	0	NA	exonic	Ackr1	nonsynonymous SNV	Ackr1:NM_010045:exon2:c.G40T:p.D14Y	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	4.86E-08	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	173677774	12A2p6	cell line	sgMsh2	173677774	A	T	SNV	Mutect2;MuSe;Vardict	3	0.098	493	0	0	NA	exonic	Ifi208	nonsynonymous SNV	"Ifi208:NM_001162938:exon2:c.A89T:p.K30M,Ifi208:NM_001379481:exon2:c.A89T:p.K30M"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.433950465	3	0.5150083	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	173901974	12A2p6	cell line	sgMsh2	173901974	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	155	0	0	NA	exonic	Ifi211	synonymous SNV	"Ifi211:NM_001033450:exon5:c.A690C:p.T230T,Ifi211:NM_001301745:exon5:c.A684C:p.T228T"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999955	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr1	173937892	12A2p6	cell line	sgMsh2	173937892	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	188	0	0	NA	exonic	Ifi203	frameshift deletion	"Ifi203:NM_001302649:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302650:exon3:c.115delA:p.M39Cfs*23,Ifi203:NM_001302651:exon3:c.115delA:p.M39Cfs*23"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.916609657	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3_p20	chr1	174041991	12A2p6	cell line	sgMsh2	174041991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	367	0	0	NA	exonic	Olfr433	nonsynonymous SNV	Olfr433:NM_146717:exon1:c.C40T:p.L14F	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	174137279	12A2p6	cell line	sgMsh2	174137279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	479	0	0	NA	exonic	Olfr424	synonymous SNV	Olfr424:NM_146721:exon1:c.C534T:p.F178F	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr1	174158781	12A2p6	cell line	sgMsh2	174158781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	254	0	0	NA	exonic	Olfr420	nonsynonymous SNV	Olfr420:NM_146305:exon1:c.T7C:p.F3L	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.690778292	2	0.9996156	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	174224500	12A2p6	cell line	sgMsh2	174224500	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	191	0	0	NA	exonic	Spta1	frameshift deletion	Spta1:NM_011465:exon39:c.5499delG:p.E1835Rfs*21	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.881185129	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr1	174250193	12A2p6	cell line	sgMsh2	174250193	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	180	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.C733T:p.L245F	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.836904469	1	0.9811169	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	174250687	12A2p6	cell line	sgMsh2	174250687	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	338	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.G239T:p.R80M	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.690778292	2	0.9999841	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	174448814	12A2p6	cell line	sgMsh2	174448814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	381	0	0	NA	exonic	Olfr220	nonsynonymous SNV	Olfr220:NM_207694:exon1:c.A190G:p.M64V	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.509227587	2	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	174699594	12A2p6	cell line	sgMsh2	174699594	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.25	79	0	0	NA	exonic	Fmn2	synonymous SNV	Fmn2:NM_019445:exon13:c.A4251G:p.E1417E	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	0.9992058	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr1	175153188	12A2p6	cell line	sgMsh2	175153188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	259	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon5:c.A269G:p.Y90C,Rgs7:NM_001347195:exon5:c.A269G:p.Y90C,Rgs7:NM_011880:exon5:c.A269G:p.Y90C"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	4.84E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	175270894	12A2p6	cell line	sgMsh2	175270894	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	239	0	0	NA	exonic	Rgs7	nonsynonymous SNV	"Rgs7:NM_001199003:exon3:c.G98A:p.R33H,Rgs7:NM_001347195:exon3:c.G98A:p.R33H,Rgs7:NM_001357129:exon3:c.G98A:p.R33H,Rgs7:NM_011880:exon3:c.G98A:p.R33H"	1qH3	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.60E-08	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	132	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.633213434	2	0.9971028	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr1	177050128	12A2p6	cell line	sgMsh2	177050128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	208	0	0	NA	exonic	Akt3	nonsynonymous SNV	Akt3:NM_011785:exon10:c.T1073C:p.I358T	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.903325459	1	0.9998793	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	178915747	12A2p6	cell line	sgMsh2	178915747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	104	0	0	NA	exonic	Kif26b	frameshift deletion	Kif26b:NM_001161665:exon12:c.3407delT:p.L1137fs*0	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr1	180421278	12A2p6	cell line	sgMsh2	180421278	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	186	0	0	NA	exonic	Itpkb	nonsynonymous SNV	Itpkb:NM_001081175:exon7:c.G2545A:p.A849T	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999995	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	188	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.894469327	1	0.9995712	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	180	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M3_p20	chr1	181101591	12A2p6	cell line	sgMsh2	181101591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	140	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon19:c.A2224C:p.T742P	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.797051875	1	0.8254769	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	181181474	12A2p6	cell line	sgMsh2	181181474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	223	0	0	NA	exonic	Wdr26	nonsynonymous SNV	Wdr26:NM_145514:exon13:c.T1730C:p.I577T	1qH4	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	4.54E-08	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	182341335	12A2p6	cell line	sgMsh2	182341335	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	47	0	0	NA	exonic	Fbxo28	nonsynonymous SNV	Fbxo28:NM_175127:exon1:c.C255A:p.S85R	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	0.9930451	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	185258555	12A2p6	cell line	sgMsh2	185258555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	301	0	0	NA	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon19:c.T1925C:p.L642P	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.916609657	1	0.9999988	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
M3_p20	chr1	185323752	12A2p6	cell line	sgMsh2	185323752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	194	0	0	NA	exonic	Iars2	nonsynonymous SNV	Iars2:NM_198653:exon4:c.T614C:p.M205T	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.6376415	2	0.9998905	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	185356503	12A2p6	cell line	sgMsh2	185356503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	434	0	0	NA	exonic	Bpnt1	nonsynonymous SNV	"Bpnt1:NM_001347212:exon8:c.T639A:p.N213K,Bpnt1:NM_011794:exon9:c.T804A:p.N268K,Bpnt1:NM_001347210:exon10:c.T849A:p.N283K"	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	185428030	12A2p6	cell line	sgMsh2	185428030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	216	0	0	NA	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon32:c.G4422A:p.M1474I,Eprs:NM_001357474:exon33:c.G4443A:p.M1481I"	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	TGG	nonsynonymous	TCCA	9	TCCATCCAT	NA
M3_p20	chr1	185464395	12A2p6	cell line	sgMsh2	185464395	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	89	0	0	NA	exonic	Slc30a10	nonsynonymous SNV	Slc30a10:NM_001033286:exon4:c.A1253C:p.N418T	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.757199282	1	0.6025521	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	187192998	12A2p6	cell line	sgMsh2	187192998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	490	0	0	NA	exonic	Spata17	nonsynonymous SNV	"Spata17:NM_028848:exon3:c.A229G:p.I77V,Spata17:NM_029067:exon3:c.A229G:p.I77V"	1qH5	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	188443396	12A2p6	cell line	sgMsh2	188443396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	141	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon16:c.T3690C:p.P1230P	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999883	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr1	188784788	12A2p6	cell line	sgMsh2	188784788	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	217	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon48:c.T9694A:p.Y3232N	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	189339813	12A2p6	cell line	sgMsh2	189339813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	159	0	0	NA	exonic	Kcnk2	nonsynonymous SNV	"Kcnk2:NM_001159850:exon2:c.A329G:p.N110S,Kcnk2:NM_001281847:exon2:c.A293G:p.N98S,Kcnk2:NM_010607:exon2:c.A284G:p.N95S"	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999966	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	189850865	12A2p6	cell line	sgMsh2	189850865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	60	0	0	NA	exonic	Ptpn14	synonymous SNV	Ptpn14:NM_008976:exon13:c.C1908T:p.G636G	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9971149	GCG	synonymous	GGC	11	GGCGGCGGCGG	NA
M3_p20	chr1	190161612	12A2p6	cell line	sgMsh2	190161612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	67	0	0	NA	exonic	Prox1	nonsynonymous SNV	"Prox1:NM_001360827:exon2:c.A635G:p.K212R,Prox1:NM_008937:exon2:c.A635G:p.K212R"	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	2	1	1	0.9982057	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	192128022	12A2p6	cell line	sgMsh2	192128022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	415	0	0	NA	exonic	Rcor3	nonsynonymous SNV	"Rcor3:NM_001290278:exon4:c.A302G:p.E101G,Rcor3:NM_001290279:exon4:c.A302G:p.E101G,Rcor3:NM_001290280:exon4:c.A302G:p.E101G,Rcor3:NM_001346740:exon4:c.A302G:p.E101G,Rcor3:NM_144814:exon4:c.A302G:p.E101G"	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.65978183	2	1.15E-08	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	230	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.814764139	1	0.9433892	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	192847134	12A2p6	cell line	sgMsh2	192847134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	176	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.T373C:p.Y125H,Sertad4:NM_198247:exon4:c.T373C:p.Y125H"	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.695206358	2	0.9904322	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	194644882	12A2p6	cell line	sgMsh2	194644882	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.223	116	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon2:c.T1123C:p.Y375H	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.987458712	1	0.9998943	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr1	194751529	12A2p6	cell line	sgMsh2	194751529	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	151	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon7:c.G1885T:p.D629Y	1qH6	chr1-128210913-195166209	5	3	2	0.91	4.029540036	NA	1	0.752771216	2	0.6797892	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	4357533	12A2p6	cell line	sgMsh2	4357533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	98	0	0	NA	exonic	Akap12	nonsynonymous SNV	Akap12:NM_031185:exon3:c.C4657A:p.L1553M	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9997817	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	5228100	12A2p6	cell line	sgMsh2	5228100	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.A14394C:p.K4798N,Syne1:NM_001347732:exon77:c.A14373C:p.K4791N"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998644	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	5229517	12A2p6	cell line	sgMsh2	5229517	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	71	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon77:c.T12977G:p.L4326R,Syne1:NM_001347732:exon77:c.T12956G:p.L4319R"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9986324	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	5259244	12A2p6	cell line	sgMsh2	5259244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	67	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon63:c.G10279A:p.A3427T,Syne1:NM_001347732:exon63:c.G10258A:p.A3420T"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9982057	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	5805268	12A2p6	cell line	sgMsh2	5805268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	16	0	0	NA	exonic	Fbxo5	nonsynonymous SNV	Fbxo5:NM_025995:exon1:c.A70G:p.T24A	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9454051	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	6890487	12A2p6	cell line	sgMsh2	6890487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	33	0	0	NA	exonic	Ipcef1	synonymous SNV	"Ipcef1:NM_001170800:exon9:c.A1209G:p.E403E,Ipcef1:NM_001347225:exon9:c.A1221G:p.E407E"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9821776	TTT	synonymous	NA	NA	NA	NA
M3_p20	chr10	10402907	12A2p6	cell line	sgMsh2	10402907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	124	0	0	NA	exonic	Adgb	nonsynonymous SNV	Adgb:NM_001127353:exon18:c.G2090A:p.G697E	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.526939851	2	0.9993422	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	11290372	12A2p6	cell line	sgMsh2	11290372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	241	0	0	NA	exonic	Fbxo30	synonymous SNV	"Fbxo30:NM_001168297:exon2:c.T837C:p.S279S,Fbxo30:NM_027968:exon2:c.T837C:p.S279S"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	1.41E-08	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr10	11290755	12A2p6	cell line	sgMsh2	11290755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	220	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.T1220C:p.V407A,Fbxo30:NM_027968:exon2:c.T1220C:p.V407A"	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	12413993	12A2p6	cell line	sgMsh2	12413993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	141	0	0	NA	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon68:c.A9602G:p.Q3201R	10qA1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999883	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	17915302	12A2p6	cell line	sgMsh2	17915302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	157	0	0	NA	exonic	Heca	synonymous SNV	Heca:NM_001033432:exon2:c.A1005G:p.A335A	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr10	18523873	12A2p6	cell line	sgMsh2	18523873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	254	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.T756C:p.D252D,Nhsl1:NM_001163592:exon6:c.T744C:p.D248D"	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	6.40E-09	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr10	19849139	12A2p6	cell line	sgMsh2	19849139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	43	0	0	NA	exonic	Slc35d3	stopgain	Slc35d3:NM_029529:exon2:c.C970T:p.Q324X	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.854616733	1	9.56E-07	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	19849510	12A2p6	cell line	sgMsh2	19849510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	90	0	0	NA	exonic	Slc35d3	nonsynonymous SNV	Slc35d3:NM_029529:exon2:c.T599C:p.L200P	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996239	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	79	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9992058	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	22664583	12A2p6	cell line	sgMsh2	22664583	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	183	0	0	NA	exonic	Slc2a12	synonymous SNV	Slc2a12:NM_178934:exon2:c.C336T:p.L112L	10qA3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999993	TCG	synonymous	NA	NA	NA	NA
M3_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	94	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997135	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	24660255	12A2p6	cell line	sgMsh2	24660255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	298	0	0	NA	exonic	Enpp1	nonsynonymous SNV	"Enpp1:NM_001308327:exon13:c.T1246C:p.Y416H,Enpp1:NM_001308329:exon13:c.T190C:p.Y64H,Enpp1:NM_008813:exon13:c.T1246C:p.Y416H"	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	1.27E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.311	231	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	2.68E-08	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	93	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996933	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	27235785	12A2p6	cell line	sgMsh2	27235785	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	84	0	0	NA	exonic	Lama2	frameshift deletion	Lama2:NM_008481:exon16:c.2238delT:p.F746Lfs*24	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr10	28981546	12A2p6	cell line	sgMsh2	28981546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	132	0	0	NA	exonic	2310057J18Rik	nonsynonymous SNV	2310057J18Rik:NM_026336:exon4:c.A614G:p.N205S	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999784	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	29150332	12A2p6	cell line	sgMsh2	29150332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	149	0	0	NA	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon4:c.T1409C:p.L470P	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999932	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	31320314	12A2p6	cell line	sgMsh2	31320314	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	139	0	0	NA	exonic	Hddc2	nonsynonymous SNV	Hddc2:NM_027168:exon4:c.A341C:p.K114T	10qA4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999866	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
M3_p20	chr10	33929917	12A2p6	cell line	sgMsh2	33929917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	90	0	0	NA	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon8:c.C1217A:p.P406H,Zup1:NM_001359456:exon8:c.C1217A:p.P406H,Zup1:NM_028287:exon8:c.C1217A:p.P406H"	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996239	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	34044091	12A2p6	cell line	sgMsh2	34044091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	137	0	0	NA	exonic	Calhm4	nonsynonymous SNV	Calhm4:NM_001081165:exon1:c.C179T:p.A60V	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999846	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	34313632	12A2p6	cell line	sgMsh2	34313632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	51	0	0	NA	exonic	Nt5dc1	nonsynonymous SNV	"Nt5dc1:NM_001347463:exon9:c.A386G:p.K129R,Nt5dc1:NM_176968:exon10:c.A1061G:p.K354R"	10qB1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9946926	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	42197496	12A2p6	cell line	sgMsh2	42197496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	30	0	0	NA	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon3:c.C1024T:p.L342L,Foxo3:NM_019740:exon3:c.C1024T:p.L342L"	10qB2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9782319	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr10	45125980	12A2p6	cell line	sgMsh2	45125980	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	326	0	0	NA	exonic	Prep	synonymous SNV	Prep:NM_011156:exon10:c.C1230T:p.C410C	10qB2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	1.04E-09	GCG	synonymous	NA	NA	NA	NA
M3_p20	chr10	45153135	12A2p6	cell line	sgMsh2	45153135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	85	0	0	NA	exonic	Prep	nonsynonymous SNV	Prep:NM_011156:exon13:c.T1630C:p.S544P	10qB2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9994717	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	230	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	2.86E-08	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	52027972	12A2p6	cell line	sgMsh2	52027972	C	T	SNV	Mutect2;MuSe;Vardict	3	0.299	14	0	0	NA	exonic	Vgll2	synonymous SNV	"Vgll2:NM_001300957:exon3:c.C927T:p.L309L,Vgll2:NM_153786:exon3:c.C930T:p.L310L"	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9378643	TCC	synonymous	NA	NA	NA	NA
M3_p20	chr10	53343900	12A2p6	cell line	sgMsh2	53343900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	115	0	0	NA	exonic	Pln	nonsynonymous SNV	"Pln:NM_023129:exon2:c.A37G:p.R13G,Pln:NM_001141927:exon3:c.A37G:p.R13G"	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999313	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	53349103	12A2p6	cell line	sgMsh2	53349103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	94	0	0	NA	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon3:c.T389C:p.M130T	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997135	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	53699057	12A2p6	cell line	sgMsh2	53699057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	71	0	0	NA	exonic	Fam184a	nonsynonymous SNV	Fam184a:NM_001081428:exon2:c.A455G:p.Q152R	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9986324	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	56049781	12A2p6	cell line	sgMsh2	56049781	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	207	0	0	NA	exonic	Tbc1d32	frameshift deletion	Tbc1d32:NM_001033385:exon29:c.3267delA:p.P1090Rfs*24	10qB3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
M3_p20	chr10	58457650	12A2p6	cell line	sgMsh2	58457650	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	167	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon7:c.G841T:p.A281S	10qB4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999998	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	59448817	12A2p6	cell line	sgMsh2	59448817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	119	0	0	NA	exonic	Mcu	synonymous SNV	Mcu:NM_001033259:exon8:c.A1017G:p.V339V	10qB4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999476	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr10	62966742	12A2p6	cell line	sgMsh2	62966742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	61	0	0	NA	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon17:c.A2638G:p.S880G	10qB4	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9973041	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	68097065	12A2p6	cell line	sgMsh2	68097065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	98	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.C3006A:p.S1002R	10qB5.2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997817	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	70283983	12A2p6	cell line	sgMsh2	70283983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	157	0	0	NA	exonic	Slc16a9	synonymous SNV	Slc16a9:NM_025807:exon6:c.T1455C:p.D485D	10qB5.3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr10	74342562	12A2p6	cell line	sgMsh2	74342562	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	68	0	0	NA	exonic	Pcdh15	frameshift deletion	"Pcdh15:NM_001142738:exon13:c.1539delG:p.G515Afs*5,Pcdh15:NM_001142736:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142740:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142743:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142748:exon14:c.1650delG:p.G552Afs*5,Pcdh15:NM_001142747:exon15:c.1665delG:p.G557Afs*5"	10qB5.3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr10	75125037	12A2p6	cell line	sgMsh2	75125037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	99	0	0	NA	exonic	Bcr	synonymous SNV	Bcr:NM_001081412:exon2:c.A1299T:p.G433G	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999796	GAA	synonymous	NA	NA	NA	NA
M3_p20	chr10	75642257	12A2p6	cell line	sgMsh2	75642257	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	130	0	0	NA	exonic	Susd2	frameshift deletion	Susd2:NM_027890:exon3:c.298delA:p.T100Pfs*42	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr10	76605074	12A2p6	cell line	sgMsh2	76605074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	71	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon22:c.A1765G:p.I589V,Col6a2:NM_146007:exon22:c.A1765G:p.I589V"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9986324	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	52	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9950397	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr10	78202959	12A2p6	cell line	sgMsh2	78202959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	100	0	0	NA	exonic	Trappc10	synonymous SNV	Trappc10:NM_001081055:exon15:c.T2298C:p.F766F	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998094	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	135	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999824	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	79017655	12A2p6	cell line	sgMsh2	79017655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	225	0	0	NA	exonic	Olfr1351	nonsynonymous SNV	Olfr1351:NM_147040:exon1:c.T332G:p.L111R	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	3.98E-08	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	79740329	12A2p6	cell line	sgMsh2	79740329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	20	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon9:c.C1579A:p.L527M	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9579057	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	79743534	12A2p6	cell line	sgMsh2	79743534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	38	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon3:c.A382G:p.T128A	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9872491	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	80011990	12A2p6	cell line	sgMsh2	80011990	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.426	60	0	0	NA	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon39:c.5421delG:p.A1809Lfs*6,Abca7:NM_013850:exon39:c.5397delG:p.A1801Lfs*6"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr10	80020721	12A2p6	cell line	sgMsh2	80020721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	33	0	0	NA	exonic	Arhgap45	synonymous SNV	"Arhgap45:NM_027521:exon2:c.T102C:p.H34H,Arhgap45:NM_001142701:exon3:c.T450C:p.H150H,Arhgap45:NM_001347074:exon3:c.T483C:p.H161H"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9821776	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr10	80274827	12A2p6	cell line	sgMsh2	80274827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	52	0	0	NA	exonic	Dazap1	synonymous SNV	"Dazap1:NM_001122604:exon4:c.T261G:p.P87P,Dazap1:NM_001122605:exon4:c.T261G:p.P87P,Dazap1:NM_001378995:exon4:c.T261G:p.P87P,Dazap1:NM_133188:exon4:c.T261G:p.P87P"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9950397	CTC	synonymous	G	5	GGGGG	NA
M3_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	73	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9988061	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M3_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	51	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9946926	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	25	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9696818	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr10	80326183	12A2p6	cell line	sgMsh2	80326183	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	75	0	0	NA	exonic	Pcsk4	nonsynonymous SNV	Pcsk4:NM_008793:exon3:c.T355A:p.W119R	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9989577	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	74	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9988845	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	80905207	12A2p6	cell line	sgMsh2	80905207	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	40	0	0	NA	exonic	Lmnb2	nonsynonymous SNV	"Lmnb2:NM_001347140:exon2:c.G297T:p.E99D,Lmnb2:NM_010722:exon5:c.G720T:p.E240D"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9888524	CCT	nonsynonymous	TCCACC	12	TCCACCTCCACC	NA
M3_p20	chr10	80931054	12A2p6	cell line	sgMsh2	80931054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	71	0	0	NA	exonic	Gadd45b	nonsynonymous SNV	Gadd45b:NM_008655:exon3:c.C172T:p.L58F	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9986324	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	82985893	12A2p6	cell line	sgMsh2	82985893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	65	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon1:c.G29A:p.R10K	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.925465789	1	0.989292	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	83506667	12A2p6	cell line	sgMsh2	83506667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	68	0	0	NA	exonic	Aldh1l2	synonymous SNV	Aldh1l2:NM_153543:exon13:c.T1617C:p.A539A	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9983234	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr10	83591052	12A2p6	cell line	sgMsh2	83591052	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	101	0	0	NA	exonic	Washc4	nonsynonymous SNV	Washc4:NM_001033375:exon31:c.T3223A:p.S1075T	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999822	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	84528116	12A2p6	cell line	sgMsh2	84528116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	43	0	0	NA	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A1082G:p.K361R	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.912181591	1	0.9675783	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	84656068	12A2p6	cell line	sgMsh2	84656068	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	153	0	0	NA	exonic	Polr3b	nonsynonymous SNV	Polr3b:NM_027423:exon12:c.T1090A:p.L364M	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999948	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	86719641	12A2p6	cell line	sgMsh2	86719641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	147	0	0	NA	exonic	Ttc41	synonymous SNV	"Ttc41:NM_153595:exon2:c.T960C:p.G320G,Ttc41:NM_001003910:exon3:c.T960C:p.G320G,Ttc41:NM_001003939:exon4:c.T960C:p.G320G"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999922	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr10	86850611	12A2p6	cell line	sgMsh2	86850611	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	179	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon63:c.T6954A:p.N2318K	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999991	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	87913683	12A2p6	cell line	sgMsh2	87913683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	147	0	0	NA	exonic	Igf1	synonymous SNV	"Igf1:NM_001111274:exon3:c.T237C:p.C79C,Igf1:NM_001111275:exon3:c.T285C:p.C95C,Igf1:NM_001111276:exon3:c.T237C:p.C79C,Igf1:NM_010512:exon3:c.T285C:p.C95C,Igf1:NM_001314010:exon4:c.T285C:p.C95C"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999922	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr10	88160925	12A2p6	cell line	sgMsh2	88160925	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.243	190	0	0	NA	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon5:c.A404C:p.K135T,Nup37:NM_028334:exon5:c.A404C:p.K135T"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	88536393	12A2p6	cell line	sgMsh2	88536393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	134	0	0	NA	exonic	Mybpc1	nonsynonymous SNV	"Mybpc1:NM_001252372:exon20:c.C2332T:p.R778C,Mybpc1:NM_175418:exon21:c.C2374T:p.R792C"	10qC1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999811	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	97517618	12A2p6	cell line	sgMsh2	97517618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	163	0	0	NA	exonic	Dcn	nonsynonymous SNV	"Dcn:NM_001190451:exon8:c.A1028T:p.Y343F,Dcn:NM_007833:exon8:c.A1028T:p.Y343F"	10qC3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999974	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	100572898	12A2p6	cell line	sgMsh2	100572898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	21	0	0	NA	exonic	Cep290	nonsynonymous SNV	Cep290:NM_146009:exon54:c.A7231G:p.K2411E	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.991886778	1	0.9582967	GAA	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr10	102482413	12A2p6	cell line	sgMsh2	102482413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	69	0	0	NA	exonic	Nts	nonsynonymous SNV	Nts:NM_024435:exon4:c.T428C:p.I143T	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9984335	GAT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr10	105823174	12A2p6	cell line	sgMsh2	105823174	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	151	0	0	NA	exonic	Mettl25	frameshift deletion	"Mettl25:NM_207522:exon5:c.1247delA:p.N416Tfs*19,Mettl25:NM_001359640:exon6:c.812delA:p.N271Tfs*19,Mettl25:NM_001359642:exon6:c.812delA:p.N271Tfs*19"	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr10	108690913	12A2p6	cell line	sgMsh2	108690913	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	142	0	0	NA	exonic	Syt1	nonsynonymous SNV	"Syt1:NM_001252342:exon4:c.A134T:p.K45M,Syt1:NM_001358501:exon4:c.A134T:p.K45M,Syt1:NM_001358503:exon4:c.A134T:p.K45M,Syt1:NM_009306:exon4:c.A134T:p.K45M,Syt1:NM_001252341:exon5:c.A134T:p.K45M,Syt1:NM_001358504:exon5:c.A134T:p.K45M,Syt1:NM_001358506:exon5:c.A134T:p.K45M,Syt1:NM_001358502:exon6:c.A134T:p.K45M"	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999989	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	109707907	12A2p6	cell line	sgMsh2	109707907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	257	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001368815:exon29:c.A5665G:p.S1889G,Nav3:NM_001081035:exon30:c.A5686G:p.S1896G"	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	5.40E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	109764975	12A2p6	cell line	sgMsh2	109764975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	40	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon16:c.G3790A:p.A1264T,Nav3:NM_001368815:exon16:c.G3790A:p.A1264T"	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9888524	GCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	109853277	12A2p6	cell line	sgMsh2	109853277	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	80	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon8:c.G1138A:p.G380R,Nav3:NM_001368815:exon8:c.G1138A:p.G380R"	10qD1	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9992579	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	83	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993948	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	117671739	12A2p6	cell line	sgMsh2	117671739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	104	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon6:c.A760G:p.N254D	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998548	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	117690486	12A2p6	cell line	sgMsh2	117690486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	336	0	0	NA	exonic	Mdm2	synonymous SNV	"Mdm2:NM_001288586:exon11:c.T1047G:p.T349T,Mdm2:NM_010786:exon12:c.T1194G:p.T398T"	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	1.02E-09	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	97	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997663	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M3_p20	chr10	121596189	12A2p6	cell line	sgMsh2	121596189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	117	0	0	NA	exonic	Xpot	nonsynonymous SNV	"Xpot:NM_001081056:exon23:c.A2800G:p.I934V,Xpot:NM_001359618:exon23:c.A2800G:p.I934V"	10qD2	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.99994	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	126008573	12A2p6	cell line	sgMsh2	126008573	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	157	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon14:c.C1905A:p.A635A	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	59	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9969126	CCG	synonymous	NA	NA	NA	NA
M3_p20	chr10	127283710	12A2p6	cell line	sgMsh2	127283710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	14	0	0	NA	exonic	Mbd6	nonsynonymous SNV	"Mbd6:NM_001347171:exon10:c.A2636G:p.K879R,Mbd6:NM_001379570:exon10:c.A2639G:p.K880R,Mbd6:NM_001379571:exon10:c.A2639G:p.K880R,Mbd6:NM_033072:exon10:c.A2642G:p.K881R"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	2	1	1	0.9378643	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	127300561	12A2p6	cell line	sgMsh2	127300561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	119	0	0	NA	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon12:c.A1394G:p.D465G,Mars1:NM_001171582:exon12:c.A1394G:p.D465G"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999476	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	127333574	12A2p6	cell line	sgMsh2	127333574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	110	0	0	NA	exonic	Gli1	synonymous SNV	Gli1:NM_010296:exon11:c.T1311C:p.S437S	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr10	127462204	12A2p6	cell line	sgMsh2	127462204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	142	0	0	NA	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001359243:exon10:c.A827G:p.Q276R,R3hdm2:NM_001359246:exon10:c.A827G:p.Q276R,R3hdm2:NM_001168292:exon11:c.A827G:p.Q276R"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	0.974174514	1	0.9999615	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	127498509	12A2p6	cell line	sgMsh2	127498509	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.367	26	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359245:exon24:c.2839delG:p.D949Tfs*19,R3hdm2:NM_001359246:exon24:c.2881delG:p.D963Tfs*19,R3hdm2:NM_027900:exon24:c.2800delG:p.D936Tfs*19,R3hdm2:NM_001359243:exon25:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001168292:exon26:c.2935delG:p.D981Tfs*19,R3hdm2:NM_001359244:exon26:c.2839delG:p.D949Tfs*19"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3_p20	chr10	128634570	12A2p6	cell line	sgMsh2	128634570	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	28	0	0	NA	exonic	Ikzf4	synonymous SNV	"Ikzf4:NM_001358537:exon8:c.A1074C:p.R358R,Ikzf4:NM_011772:exon8:c.A1239C:p.R413R,Ikzf4:NM_001358536:exon9:c.A1074C:p.R358R"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9751391	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr10	128699547	12A2p6	cell line	sgMsh2	128699547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	63	0	0	NA	exonic	Cdk2	synonymous SNV	"Cdk2:NM_016756:exon6:c.T717C:p.S239S,Cdk2:NM_183417:exon7:c.T861C:p.S287S"	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9976461	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr10	129238632	12A2p6	cell line	sgMsh2	129238632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	457	0	0	NA	exonic	Olfr774	nonsynonymous SNV	Olfr774:NM_207620:exon1:c.T482G:p.F161C	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	129437268	12A2p6	cell line	sgMsh2	129437268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	275	0	0	NA	exonic	Olfr786	nonsynonymous SNV	Olfr786:NM_146549:exon1:c.T455C:p.L152P	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	2.29E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	129501642	12A2p6	cell line	sgMsh2	129501642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	154	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.G757A:p.V253I	10qD3	chr10-3120209-129526639	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999952	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	129607790	12A2p6	cell line	sgMsh2	129607790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	84	0	0	NA	exonic	Olfr796	synonymous SNV	Olfr796:NM_146931:exon1:c.T690G:p.A230A	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr10	129625486	12A2p6	cell line	sgMsh2	129625486	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	302	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T574G:p.F192V	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr10	129670245	12A2p6	cell line	sgMsh2	129670245	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	309	0	0	NA	exonic	Olfr801	synonymous SNV	Olfr801:NM_146285:exon1:c.C273A:p.S91S	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr10	129754686	12A2p6	cell line	sgMsh2	129754686	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	193	0	0	NA	exonic	Olfr807	nonsynonymous SNV	Olfr807:NM_146929:exon1:c.A763T:p.M255L	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATA	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr10	130446820	12A2p6	cell line	sgMsh2	130446820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	678	0	0	NA	exonic	Vmn2r86	synonymous SNV	Vmn2r86:NM_001103365:exon6:c.T1926C:p.H642H	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAT	synonymous	NA	NA	NA	NA
M3_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	338	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	191	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	3976369	12A2p6	cell line	sgMsh2	3976369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	91	0	0	NA	exonic	Pes1	nonsynonymous SNV	Pes1:NM_022889:exon10:c.T991C:p.F331L	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9996486	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	4146243	12A2p6	cell line	sgMsh2	4146243	G	-	Deletion	Strelka2;Vardict	2	0.1765	17	0	0	NA	exonic	Ccdc157	frameshift deletion	"Ccdc157:NM_001164620:exon9:c.1672delC:p.Q558Rfs*36,Ccdc157:NM_177616:exon10:c.1366delC:p.Q456Rfs*36"	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.781553644	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3_p20	chr11	4215006	12A2p6	cell line	sgMsh2	4215006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	74	0	0	NA	exonic	Tbc1d10a	synonymous SNV	Tbc1d10a:NM_134023:exon9:c.A1356G:p.T452T	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9988845	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr11	4816104	12A2p6	cell line	sgMsh2	4816104	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	244	0	0	NA	exonic	Nf2	nonsynonymous SNV	"Nf2:NM_001361675:exon3:c.C302T:p.A101V,Nf2:NM_001361676:exon3:c.C302T:p.A101V,Nf2:NM_001252250:exon4:c.C425T:p.A142V,Nf2:NM_001252251:exon4:c.C425T:p.A142V,Nf2:NM_001252252:exon4:c.C425T:p.A142V,Nf2:NM_001252253:exon4:c.C311T:p.A104V,Nf2:NM_001361677:exon4:c.C425T:p.A142V,Nf2:NM_010898:exon4:c.C425T:p.A142V"	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.810336073	1	0.924632	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	5058511	12A2p6	cell line	sgMsh2	5058511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	31	0	0	NA	exonic	Rasl10a	nonsynonymous SNV	"Rasl10a:NM_001363179:exon1:c.C206A:p.P69H,Rasl10a:NM_145216:exon1:c.C206A:p.P69H"	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9796339	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	6598026	12A2p6	cell line	sgMsh2	6598026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	242	0	0	NA	exonic	Nacad	synonymous SNV	Nacad:NM_001081652:exon7:c.T4479C:p.S1493S	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.32E-08	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	7139118	12A2p6	cell line	sgMsh2	7139118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	151	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon8:c.A1531G:p.M511V	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999941	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	9031514	12A2p6	cell line	sgMsh2	9031514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	118	0	0	NA	exonic	Sun3	nonsynonymous SNV	Sun3:NM_001290519:exon3:c.A89C:p.K30T	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.779339611	1	0.7050127	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	9273928	12A2p6	cell line	sgMsh2	9273928	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	284	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon11:c.T1306A:p.S436T	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	1.43E-08	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	12249810	12A2p6	cell line	sgMsh2	12249810	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.347	25	0	0	NA	exonic	Cobl	frameshift deletion	"Cobl:NM_001282993:exon13:c.3761delC:p.P1254Hfs*18,Cobl:NM_001282994:exon14:c.3815delC:p.P1272Hfs*18,Cobl:NM_172496:exon14:c.3836delC:p.P1279Hfs*18"	11qA1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr11	19016358	12A2p6	cell line	sgMsh2	19016358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	42	0	0	NA	exonic	Meis1	nonsynonymous SNV	"Meis1:NM_001193271:exon2:c.A14G:p.Y5C,Meis1:NM_010789:exon2:c.A14G:p.Y5C"	11qA3.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9902561	GTA	nonsynonymous	GTC	8	GTCGTCGT	NA
M3_p20	chr11	21711600	12A2p6	cell line	sgMsh2	21711600	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	165	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon9:c.G634A:p.V212I,Wdpcp:NM_145425:exon10:c.G871A:p.V291I"	11qA3.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999977	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	169	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	0.999987	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	22137982	12A2p6	cell line	sgMsh2	22137982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	47	0	0	NA	exonic	Ehbp1	synonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1176G:p.E392E,Ehbp1:NM_153078:exon11:c.A1101G:p.E367E"	11qA3.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	22138040	12A2p6	cell line	sgMsh2	22138040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	exonic	Ehbp1	nonsynonymous SNV	"Ehbp1:NM_001252515:exon11:c.A1118G:p.E373G,Ehbp1:NM_153078:exon11:c.A1043G:p.E348G"	11qA3.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.9908533	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	23625036	12A2p6	cell line	sgMsh2	23625036	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	120	0	0	NA	exonic	0610010F05Rik	synonymous SNV	0610010F05Rik:NM_027860:exon4:c.T237G:p.G79G	11qA3.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9962714	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	23625084	12A2p6	cell line	sgMsh2	23625084	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	78	0	0	NA	exonic	0610010F05Rik	nonsynonymous SNV	0610010F05Rik:NM_027860:exon4:c.T189A:p.S63R	11qA3.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.664209896	2	0.8700329	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	24085488	12A2p6	cell line	sgMsh2	24085488	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	99	0	0	NA	exonic	Bcl11a	nonsynonymous SNV	"Bcl11a:NM_001159289:exon2:c.C223A:p.L75I,Bcl11a:NM_001159290:exon2:c.C67A:p.L23I,Bcl11a:NM_001242934:exon2:c.C223A:p.L75I,Bcl11a:NM_016707:exon2:c.C223A:p.L75I"	11qA3.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	28910630	12A2p6	cell line	sgMsh2	28910630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	313	0	0	NA	exonic	Efemp1	nonsynonymous SNV	Efemp1:NM_146015:exon5:c.G538T:p.G180W	11qA3.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.10E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	29482310	12A2p6	cell line	sgMsh2	29482310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	110	0	0	NA	exonic	Ccdc88a	nonsynonymous SNV	"Ccdc88a:NM_001363368:exon20:c.T3526C:p.S1176P,Ccdc88a:NM_001363369:exon20:c.T3526C:p.S1176P,Ccdc88a:NM_176841:exon20:c.T3526C:p.S1176P"	11qA3.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999034	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	29736364	12A2p6	cell line	sgMsh2	29736364	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	128	0	0	NA	exonic	Rtn4	nonsynonymous SNV	"Rtn4:NM_024226:exon3:c.T247G:p.Y83D,Rtn4:NM_194052:exon3:c.T718G:p.Y240D,Rtn4:NM_194053:exon4:c.T775G:p.Y259D,Rtn4:NM_194051:exon5:c.T2788G:p.Y930D,Rtn4:NM_194054:exon5:c.T3136G:p.Y1046D"	11qA3.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999716	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	30219716	12A2p6	cell line	sgMsh2	30219716	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	175	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	Sptbn1:NM_175836:exon1:c.C11T:p.T4M	11qA3.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9968197	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	30426246	12A2p6	cell line	sgMsh2	30426246	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.244	138	0	0	NA	exonic	4930505A04Rik	frameshift insertion	4930505A04Rik:NM_001100394:exon5:c.619dupA:p.T207Nfs*72	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M3_p20	chr11	30454689	12A2p6	cell line	sgMsh2	30454689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	212	0	0	NA	exonic	4930505A04Rik	synonymous SNV	4930505A04Rik:NM_001100394:exon2:c.T213C:p.N71N	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.708490556	2	0.9932087	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr11	30845277	12A2p6	cell line	sgMsh2	30845277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	182	0	0	NA	exonic	Psme4	synonymous SNV	Psme4:NM_134013:exon33:c.A3786G:p.E1262E	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999993	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr11	30845305	12A2p6	cell line	sgMsh2	30845305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	178	0	0	NA	exonic	Psme4	nonsynonymous SNV	Psme4:NM_134013:exon33:c.A3814C:p.T1272P	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999991	AAC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr11	30891948	12A2p6	cell line	sgMsh2	30891948	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	343	0	0	NA	exonic	Gpr75	nonsynonymous SNV	Gpr75:NM_175490:exon2:c.A852C:p.Q284H	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.01E-09	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	30949946	12A2p6	cell line	sgMsh2	30949946	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	386	0	0	NA	exonic	Erlec1	nonsynonymous SNV	Erlec1:NM_025745:exon6:c.T522A:p.N174K	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	1.40E-08	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	366	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	173	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999987	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	34402371	12A2p6	cell line	sgMsh2	34402371	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	158	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.C412A:p.L138I	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.999981	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	415	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	34691926	12A2p6	cell line	sgMsh2	34691926	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	213	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon19:c.T1901G:p.L634R	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	34825436	12A2p6	cell line	sgMsh2	34825436	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	128	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon3:c.A260T:p.K87M	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999716	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	35632828	12A2p6	cell line	sgMsh2	35632828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	97	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon19:c.A2090G:p.K697R	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.9933232	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	35841755	12A2p6	cell line	sgMsh2	35841755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	31	0	0	NA	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon21:c.A3125G:p.K1042R	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9694701	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
M3_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	50	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9943212	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	216	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	36068389	12A2p6	cell line	sgMsh2	36068389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	254	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon16:c.T3236C:p.L1079P,Tenm2:NM_011856:exon17:c.T3329C:p.L1110P"	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	6.40E-09	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	36221410	12A2p6	cell line	sgMsh2	36221411	TT	AA	DBS	Mutect2;Vardict	2	0.195	196	0	0	NA	exonic	Tenm2	nonframeshift substitution	Tenm2:NM_011856:exon6:c.1306_1307TT:p.K436L	11qA4	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.863472865	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	40710181	12A2p6	cell line	sgMsh2	40710181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	609	0	0	NA	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1361G:p.D454G	11qA5	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.9983201	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	43776045	12A2p6	cell line	sgMsh2	43776045	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.6	5	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon2:c.A1364G:p.E455G,Adra1b:NM_001284380:exon4:c.A1364G:p.E455G,Adra1b:NM_001284381:exon5:c.A1364G:p.E455G"	11qB1.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.886845	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	43835686	12A2p6	cell line	sgMsh2	43835686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	118	0	0	NA	exonic	Adra1b	nonsynonymous SNV	"Adra1b:NM_007416:exon1:c.A403G:p.S135G,Adra1b:NM_001284380:exon3:c.A403G:p.S135G,Adra1b:NM_001284381:exon4:c.A403G:p.S135G"	11qB1.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.814764139	1	0.9091229	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	46150613	12A2p6	cell line	sgMsh2	46150613	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	235	0	0	NA	exonic	Nipal4	synonymous SNV	Nipal4:NM_172524:exon6:c.A754C:p.R252R	11qB1.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	2.06E-08	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	90	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9981119	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr11	49341357	12A2p6	cell line	sgMsh2	49341357	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	277	0	0	NA	exonic	Olfr1390	frameshift deletion	Olfr1390:NM_147065:exon1:c.824delT:p.Y277Ifs*10	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	311	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.11E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	49430691	12A2p6	cell line	sgMsh2	49430691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	400	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T214C:p.C72R	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	49430856	12A2p6	cell line	sgMsh2	49430856	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	455	0	0	NA	exonic	Olfr1389	nonsynonymous SNV	Olfr1389:NM_147066:exon1:c.T379A:p.C127S	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.810336073	1	0.9588452	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	49681178	12A2p6	cell line	sgMsh2	49681178	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	268	0	0	NA	exonic	Cnot6	synonymous SNV	"Cnot6:NM_001290741:exon9:c.A990T:p.V330V,Cnot6:NM_001363356:exon9:c.A990T:p.V330V,Cnot6:NM_001363357:exon9:c.A690T:p.V230V,Cnot6:NM_212484:exon9:c.A975T:p.V325V"	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	3.08E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr11	49823804	12A2p6	cell line	sgMsh2	49823804	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	275	0	0	NA	exonic	Gfpt2	synonymous SNV	Gfpt2:NM_013529:exon11:c.T1029A:p.G343G	11qB1.2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	2.29E-09	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr11	50202478	12A2p6	cell line	sgMsh2	50202478	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	69	0	0	NA	exonic	Sqstm1	nonsynonymous SNV	Sqstm1:NM_011018:exon7:c.A1092C:p.E364D	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9984335	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	50234500	12A2p6	cell line	sgMsh2	50234500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	122	0	0	NA	exonic	Mgat4b	nonsynonymous SNV	Mgat4b:NM_145926:exon14:c.C1601T:p.P534L	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999573	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	50382808	12A2p6	cell line	sgMsh2	50382808	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	361	0	0	NA	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362529:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362530:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362533:exon6:c.G724A:p.G242S,Hnrnph1:NM_001362534:exon6:c.G121A:p.G41S,Hnrnph1:NM_001347487:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362522:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362524:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362525:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362527:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362528:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362532:exon7:c.G724A:p.G242S,Hnrnph1:NM_021510:exon7:c.G724A:p.G242S,Hnrnph1:NM_001362523:exon8:c.G724A:p.G242S"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	50985059	12A2p6	cell line	sgMsh2	50985059	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.238	666	0	0	NA	exonic	Olfr1377	synonymous SNV	Olfr1377:NM_146911:exon1:c.C357A:p.A119A	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr11	51825013	12A2p6	cell line	sgMsh2	51825013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	94	0	0	NA	exonic	Jade2	nonsynonymous SNV	"Jade2:NM_199299:exon9:c.C1364T:p.A455V,Jade2:NM_001357588:exon10:c.C1580T:p.A527V"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997135	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	53536055	12A2p6	cell line	sgMsh2	53536055	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	124	0	0	NA	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon5:c.C642T:p.I214I,Septin8:NM_001252333:exon5:c.C636T:p.I212I,Septin8:NM_001347496:exon5:c.C642T:p.I214I,Septin8:NM_001361968:exon5:c.C636T:p.I212I,Septin8:NM_001361969:exon5:c.C456T:p.I152I,Septin8:NM_033144:exon5:c.C642T:p.I214I"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	0.9991175	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	87	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995388	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	263	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	0.9999976	AAC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr11	58597595	12A2p6	cell line	sgMsh2	58597595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	137	0	0	NA	exonic	Olfr324	synonymous SNV	Olfr324:NM_001011743:exon1:c.T204C:p.A68A	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999846	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr11	58918897	12A2p6	cell line	sgMsh2	58918897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	267	0	0	NA	exonic	Btnl10	nonsynonymous SNV	"Btnl10:NM_001363414:exon2:c.A28G:p.T10A,Btnl10:NM_138678:exon2:c.A28G:p.T10A"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999846	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	58994422	12A2p6	cell line	sgMsh2	58994422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	53	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon104:c.C24009T:p.F8003F	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.779339611	1	0.796369	GGA	synonymous	NA	NA	NA	NA
M3_p20	chr11	59003277	12A2p6	cell line	sgMsh2	59003277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	165	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon88:c.T20152C:p.Y6718H	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999977	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	59042160	12A2p6	cell line	sgMsh2	59042160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	219	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon54:c.T14389C:p.L4797L,Obscn:NM_199152:exon61:c.T16348C:p.L5450L"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9999998	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	59061024	12A2p6	cell line	sgMsh2	59061024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	316	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon44:c.A11902G:p.K3968E,Obscn:NM_199152:exon47:c.A12793G:p.K4265E"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.801479941	1	0.85413	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	59063667	12A2p6	cell line	sgMsh2	59063667	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.465	15	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon41:c.11088delT:p.F3696Lfs*1,Obscn:NM_199152:exon43:c.11715delT:p.F3905Lfs*1"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3_p20	chr11	59082657	12A2p6	cell line	sgMsh2	59082657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	68	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon19:c.T5847C:p.R1949R,Obscn:NM_199152:exon21:c.T6474C:p.R2158R"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9983234	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.122	184	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.540224049	2	0.9999903	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	59131555	12A2p6	cell line	sgMsh2	59131555	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	59	0	0	NA	exonic	Obscn	stopgain	"Obscn:NM_001171512:exon6:c.T2363A:p.L788X,Obscn:NM_199152:exon6:c.T2363A:p.L788X"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9969126	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	59503502	12A2p6	cell line	sgMsh2	59503502	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	24	0	0	NA	exonic	Zkscan17	nonsynonymous SNV	"Zkscan17:NM_001130529:exon4:c.T212C:p.L71S,Zkscan17:NM_172941:exon4:c.T272C:p.L91S"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9676163	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	59769987	12A2p6	cell line	sgMsh2	59769987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	164	0	0	NA	exonic	Mprip	nonsynonymous SNV	"Mprip:NM_012027:exon21:c.A2897G:p.K966R,Mprip:NM_201245:exon21:c.A2897G:p.K966R,Mprip:NM_001368931:exon22:c.A7055G:p.K2352R"	11qB1.3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9959188	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	60476821	12A2p6	cell line	sgMsh2	60476821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	62	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_001103171:exon2:c.A406G:p.K136E,Myo15:NM_010862:exon2:c.A406G:p.K136E"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9561506	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	60779236	12A2p6	cell line	sgMsh2	60779236	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	275	0	0	NA	exonic	Smcr8	nonsynonymous SNV	"Smcr8:NM_001085440:exon1:c.A1209C:p.E403D,Smcr8:NM_175491:exon1:c.A1209C:p.E403D"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	2.29E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	61449691	12A2p6	cell line	sgMsh2	61449691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	53	0	0	NA	exonic	Rnf112	nonsynonymous SNV	"Rnf112:NM_001291024:exon14:c.T1612C:p.S538P,Rnf112:NM_001359130:exon14:c.T1756C:p.S586P,Rnf112:NM_009548:exon15:c.T1681C:p.S561P"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9953643	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	61492914	12A2p6	cell line	sgMsh2	61492914	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	167	0	0	NA	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon2:c.T388A:p.F130I,Mapk7:NM_001291037:exon2:c.T178A:p.F60I,Mapk7:NM_001291033:exon3:c.T181A:p.F61I,Mapk7:NM_011841:exon3:c.T388A:p.F130I"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.999998	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	128	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999716	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	61779733	12A2p6	cell line	sgMsh2	61779733	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	136	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon26:c.T2996A:p.L999H	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999835	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	61834867	12A2p6	cell line	sgMsh2	61834867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	287	0	0	NA	exonic	Ulk2	nonsynonymous SNV	Ulk2:NM_013881:exon6:c.A382G:p.I128V	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1.57E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	62118270	12A2p6	cell line	sgMsh2	62118270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	229	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.T611C:p.F204S,Specc1:NM_001281818:exon4:c.T851C:p.F284S,Specc1:NM_001310526:exon4:c.T851C:p.F284S"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.9993407	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	62119127	12A2p6	cell line	sgMsh2	62119127	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	116	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon2:c.A1468G:p.T490A,Specc1:NM_001281818:exon4:c.A1708G:p.T570A,Specc1:NM_001310526:exon4:c.A1708G:p.T570A"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999358	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	62249372	12A2p6	cell line	sgMsh2	62249372	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	59	0	0	NA	exonic	Adora2b	nonsynonymous SNV	Adora2b:NM_007413:exon1:c.A271C:p.S91R	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9969126	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	62334572	12A2p6	cell line	sgMsh2	62334572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	210	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon35:c.A5362G:p.R1788G,Ncor1:NM_011308:exon35:c.A5161G:p.R1721G"	11qB2	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	63070310	12A2p6	cell line	sgMsh2	63070310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	185	0	0	NA	exonic	Tekt3	nonsynonymous SNV	Tekt3:NM_027660:exon2:c.T304C:p.S102P	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	63094781	12A2p6	cell line	sgMsh2	63094781	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	182	0	0	NA	exonic	Tekt3	frameshift deletion	Tekt3:NM_027660:exon8:c.1412delA:p.K472Nfs*2	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.960890316	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr11	65039187	12A2p6	cell line	sgMsh2	65039187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	67	0	0	NA	exonic	Arhgap44	synonymous SNV	"Arhgap44:NM_001099288:exon9:c.C697T:p.L233L,Arhgap44:NM_175003:exon9:c.C697T:p.L233L"	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9982057	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr11	65187431	12A2p6	cell line	sgMsh2	65187431	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	68	0	0	NA	exonic	Myocd	nonsynonymous SNV	"Myocd:NM_145136:exon10:c.C1537T:p.P513S,Myocd:NM_146386:exon10:c.C1537T:p.P513S"	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9983234	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	66145267	12A2p6	cell line	sgMsh2	66145267	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.179	114	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.G1316A:p.G439D	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.792623809	1	0.8053814	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	66145269	12A2p6	cell line	sgMsh2	66145269	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.179	114	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon6:c.T1314A:p.D438E	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.792623809	1	0.8053814	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	66155422	12A2p6	cell line	sgMsh2	66155422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	181	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon4:c.A893T:p.E298V	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999992	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	67185256	12A2p6	cell line	sgMsh2	67185256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	371	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon20:c.T2268A:p.I756I	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.9999932	TTG	synonymous	CATTGA	13	CATTGACATTGAC	NA
M3_p20	chr11	67197288	12A2p6	cell line	sgMsh2	67197288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	164	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon40:c.T5729C:p.L1910P	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999975	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	349	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.814764139	1	0.9662839	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	67243457	12A2p6	cell line	sgMsh2	67243457	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	680	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon11:c.T937G:p.F313V	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	67289796	12A2p6	cell line	sgMsh2	67289796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	149	0	0	NA	exonic	Myh8	synonymous SNV	Myh8:NM_177369:exon16:c.T1857C:p.T619T	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999932	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr11	68590905	12A2p6	cell line	sgMsh2	68590905	A	-	Deletion	Strelka2;Vardict	2	0.1707	82	0	0	NA	exonic	Ccdc42	frameshift deletion	Ccdc42:NM_177779:exon4:c.324delA:p.A111Pfs*6	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.755870862	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr11	68784960	12A2p6	cell line	sgMsh2	68784960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	331	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon18:c.A2214G:p.K738K	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	39	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	0.850188667	1	0.9180523	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	68814480	12A2p6	cell line	sgMsh2	68814480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	115	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon40:c.A5712G:p.Q1904Q	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999313	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr11	69355376	12A2p6	cell line	sgMsh2	69355376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	60	0	0	NA	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon20:c.T3371C:p.L1124P	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9971149	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	69478799	12A2p6	cell line	sgMsh2	69478799	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	172	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon30:c.A4850C:p.E1617A	11qB3	chr11-3133133-69579350	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999986	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	69736805	12A2p6	cell line	sgMsh2	69736805	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	97	0	0	NA	exonic	Polr2a	synonymous SNV	Polr2a:NM_001291068:exon25:c.A4275G:p.G1425G	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	2	1	1	0.9997663	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	88	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9995692	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	69795867	12A2p6	cell line	sgMsh2	69795867	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.292	90	0	0	NA	exonic	Chrnb1	frameshift deletion	Chrnb1:NM_009601:exon1:c.13delG:p.A5Rfs*5	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr11	69804443	12A2p6	cell line	sgMsh2	69804443	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.254	271	0	0	NA	exonic	Tmem102	synonymous SNV	Tmem102:NM_001033433:exon2:c.G702A:p.L234L	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	2.70E-09	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr11	69804445	12A2p6	cell line	sgMsh2	69804445	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.254	271	0	0	NA	exonic	Tmem102	nonsynonymous SNV	Tmem102:NM_001033433:exon2:c.T700A:p.L234M	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	2.70E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	69848314	12A2p6	cell line	sgMsh2	69848314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	196	0	0	NA	exonic	Plscr3	nonsynonymous SNV	"Plscr3:NM_001168497:exon6:c.C611T:p.P204L,Plscr3:NM_023564:exon6:c.C611T:p.P204L"	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	69909053	12A2p6	cell line	sgMsh2	69909053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	178	0	0	NA	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon18:c.T3090C:p.D1030D,Neurl4:NM_001013414:exon19:c.T3162C:p.D1054D,Neurl4:NM_001291118:exon19:c.T3156C:p.D1052D"	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.969746448	1	0.999994	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr11	70030599	12A2p6	cell line	sgMsh2	70030599	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	207	0	0	NA	exonic	Dlg4	stopgain	Dlg4:NM_007864:exon4:c.T155A:p.L52X	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.929893855	1	0.999981	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	70607790	12A2p6	cell line	sgMsh2	70607790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	34	0	0	NA	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_001045959:exon16:c.T1780C:p.Y594H,Mink1:NM_001045964:exon16:c.T1780C:p.Y594H,Mink1:NM_016713:exon16:c.T1780C:p.Y594H,Mink1:NM_176893:exon16:c.T1780C:p.Y594H"	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.881185129	1	0.9366513	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	70641197	12A2p6	cell line	sgMsh2	70641197	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	187	0	0	NA	exonic	Gp1ba	synonymous SNV	Gp1ba:NM_010326:exon2:c.T1788G:p.T596T	11qB3	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9999995	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.213	148	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.943178052	1	0.9998702	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	72550138	12A2p6	cell line	sgMsh2	72550138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	112	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon1:c.A71G:p.Y24C	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9999157	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	73217842	12A2p6	cell line	sgMsh2	73217842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	95	0	0	NA	exonic	Shpk	synonymous SNV	Shpk:NM_029031:exon6:c.T861C:p.P287P	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9997323	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr11	73711263	12A2p6	cell line	sgMsh2	73711263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	330	0	0	NA	exonic	Zfp735	synonymous SNV	Zfp735:NM_001126489:exon4:c.T1032C:p.H344H	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.974174514	1	1.57E-09	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr11	73787214	12A2p6	cell line	sgMsh2	73787214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	669	0	0	NA	exonic	Olfr390	nonsynonymous SNV	Olfr390:NM_146347:exon1:c.T275C:p.I92T	11qB4	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	1	ATC	nonsynonymous	CATC	9	CATCCATCC	NA
M3_p20	chr11	75451303	12A2p6	cell line	sgMsh2	75451303	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	27	0	0	NA	exonic	Wdr81	nonsynonymous SNV	Wdr81:NM_138950:exon1:c.T3137A:p.I1046N	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9734358	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	314	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	1.09E-09	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	75671245	12A2p6	cell line	sgMsh2	75671245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	0	0	NA	exonic	Myo1c	nonsynonymous SNV	"Myo1c:NM_001080774:exon26:c.A2558G:p.Y853C,Myo1c:NM_001080775:exon26:c.A2606G:p.Y869C,Myo1c:NM_001370611:exon26:c.A2663G:p.Y888C,Myo1c:NM_008659:exon26:c.A2558G:p.Y853C"	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.947606118	1	0.9990622	TAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr11	76797605	12A2p6	cell line	sgMsh2	76797605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	270	0	0	NA	exonic	Cpd	nonsynonymous SNV	Cpd:NM_007754:exon12:c.A2840G:p.Y947C	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	2.82E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	76949975	12A2p6	cell line	sgMsh2	76949975	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	302	0	0	NA	exonic	Blmh	nonsynonymous SNV	Blmh:NM_178645:exon3:c.T227G:p.F76C	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	1.21E-09	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	77078398	12A2p6	cell line	sgMsh2	77078398	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	92	0	0	NA	exonic	Nsrp1	nonsynonymous SNV	Nsrp1:NM_001012309:exon1:c.A1C:p.M1L	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9996717	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	77824228	12A2p6	cell line	sgMsh2	77824228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	27	0	0	NA	exonic	Myo18a	synonymous SNV	"Myo18a:NM_001291214:exon12:c.G1443A:p.R481R,Myo18a:NM_011586:exon13:c.G2448A:p.R816R,Myo18a:NM_001291212:exon14:c.G2484A:p.R828R,Myo18a:NM_001291213:exon14:c.G2592A:p.R864R,Myo18a:NM_001291215:exon15:c.G1509A:p.R503R"	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	2	1	1	0.9734358	GGC	synonymous	NA	NA	NA	NA
M3_p20	chr11	77846442	12A2p6	cell line	sgMsh2	77846442	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	73	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon29:c.A3764C:p.D1255A,Myo18a:NM_011586:exon30:c.A4769C:p.D1590A,Myo18a:NM_001291212:exon31:c.A4805C:p.D1602A,Myo18a:NM_001291213:exon31:c.A4913C:p.D1638A,Myo18a:NM_001291215:exon32:c.A3830C:p.D1277A"	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9988061	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	78034527	12A2p6	cell line	sgMsh2	78034527	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	54	0	0	NA	exonic	Dhrs13	nonsynonymous SNV	Dhrs13:NM_183286:exon4:c.C623T:p.A208V	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.358673344	3	0.7038178	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	78219960	12A2p6	cell line	sgMsh2	78219960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	107	0	0	NA	exonic	Supt6	nonsynonymous SNV	Supt6:NM_009297:exon25:c.C3265A:p.L1089I	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	2	1	1	0.9998816	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	128	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.814764139	1	0.9128178	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr11	80242112	12A2p6	cell line	sgMsh2	80242112	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	205	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001362870:exon8:c.T251G:p.F84C,Rhot1:NM_001163354:exon9:c.T671G:p.F224C,Rhot1:NM_001163355:exon9:c.T671G:p.F224C,Rhot1:NM_001362868:exon9:c.T671G:p.F224C,Rhot1:NM_021536:exon9:c.T671G:p.F224C,Rhot1:NM_001362869:exon10:c.T410G:p.F137C"	11qB5	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	1	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	82722463	12A2p6	cell line	sgMsh2	82722463	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	128	0	0	NA	exonic	Cct6b	synonymous SNV	"Cct6b:NM_001291242:exon12:c.T1251G:p.G417G,Cct6b:NM_009839:exon12:c.T1368G:p.G456G"	11qC	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	1	0.960890316	1	0.9998423	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	82898806	12A2p6	cell line	sgMsh2	82898806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	92	0	0	NA	exonic	Fndc8	synonymous SNV	Fndc8:NM_030224:exon3:c.A789T:p.V263V	11qC	chr11-69590981-82929860	4	4	0	0.91	4.029540036	NA	2	1	1	0.9996717	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr11	83753866	12A2p6	cell line	sgMsh2	83753866	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.668	11	0	0	NA	exonic	Heatr6	synonymous SNV	Heatr6:NM_145432:exon1:c.C144T:p.S48S	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9245435	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr11	84522199	12A2p6	cell line	sgMsh2	84522199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	170	0	0	NA	exonic	Lhx1	nonsynonymous SNV	Lhx1:NM_008498:exon2:c.A260G:p.N87S	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999984	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	84878147	12A2p6	cell line	sgMsh2	84878147	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	141	0	0	NA	exonic	Pigw	frameshift deletion	"Pigw:NM_001077636:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_001363112:exon2:c.355delA:p.I119Sfs*2,Pigw:NM_027388:exon2:c.355delA:p.I119Sfs*2"	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	369	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	1.03E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990262	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	87433817	12A2p6	cell line	sgMsh2	87433817	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	67	0	0	NA	exonic	Tex14	frameshift deletion	"Tex14:NM_001199293:exon2:c.44delG:p.A17Lfs*32,Tex14:NM_031386:exon2:c.8delG:p.A5Lfs*32"	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.690778292	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3_p20	chr11	87542566	12A2p6	cell line	sgMsh2	87542566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	369	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon26:c.G4002A:p.K1334K,Tex14:NM_031386:exon26:c.G3966A:p.K1322K"	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr11	87567526	12A2p6	cell line	sgMsh2	87567526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	169	0	0	NA	exonic	Septin4	nonsynonymous SNV	Septin4:NM_001368775:exon1:c.T725G:p.I242S	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.6772546	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	87730197	12A2p6	cell line	sgMsh2	87730197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	134	0	0	NA	exonic	Rnf43	synonymous SNV	"Rnf43:NM_001363437:exon7:c.G534A:p.Q178Q,Rnf43:NM_172448:exon8:c.G915A:p.Q305Q"	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.907753525	1	0.9986994	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	39	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9880774	GGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	216	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	89440739	12A2p6	cell line	sgMsh2	89440739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	0	0	NA	exonic	Ankfn1	synonymous SNV	Ankfn1:NM_001327810:exon13:c.A1566G:p.T522T	11qC	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999652	CTG	synonymous	AGCTG	10	AGCTGAGCTG	NA
M3_p20	chr11	93876127	12A2p6	cell line	sgMsh2	93876127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	208	0	0	NA	exonic	Utp18	synonymous SNV	Utp18:NM_001013375:exon6:c.G753A:p.S251S	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9999949	ACG	synonymous	NA	NA	NA	NA
M3_p20	chr11	94334532	12A2p6	cell line	sgMsh2	94334532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	77	0	0	NA	exonic	Ankrd40	nonsynonymous SNV	"Ankrd40:NM_027799:exon3:c.A388G:p.T130A,Ankrd40:NM_146024:exon3:c.A388G:p.T130A"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.606645038	2	0.9666468	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	94427459	12A2p6	cell line	sgMsh2	94427459	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	126	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.C4278A:p.N1426K,Cacna1g:NM_001177888:exon22:c.C4278A:p.N1426K,Cacna1g:NM_001177890:exon22:c.C4227A:p.N1409K,Cacna1g:NM_009783:exon23:c.C4347A:p.N1449K"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	94465827	12A2p6	cell line	sgMsh2	94465827	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	56	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon3:c.T482A:p.I161N,Cacna1g:NM_001177888:exon3:c.T482A:p.I161N,Cacna1g:NM_001177890:exon3:c.T482A:p.I161N,Cacna1g:NM_009783:exon3:c.T482A:p.I161N"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9962165	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	105	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.9867958	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	121	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9974948	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	96099965	12A2p6	cell line	sgMsh2	96099965	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	108	0	0	NA	exonic	Calcoco2	nonsynonymous SNV	Calcoco2:NM_001271018:exon6:c.G945T:p.K315N	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9924462	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	97022316	12A2p6	cell line	sgMsh2	97022316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	107	0	0	NA	exonic	Sp6	nonsynonymous SNV	"Sp6:NM_001363230:exon2:c.T854C:p.V285A,Sp6:NM_031183:exon2:c.T854C:p.V285A"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998816	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	97181660	12A2p6	cell line	sgMsh2	97181660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	404	0	0	NA	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon4:c.A448G:p.T150A	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	98152821	12A2p6	cell line	sgMsh2	98152821	C	-	Deletion	Mutect2;Vardict	2	0.471	30	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M3_p20	chr11	98250323	12A2p6	cell line	sgMsh2	98250323	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	50	0	0	NA	exonic	Cdk12	frameshift deletion	"Cdk12:NM_001109626:exon14:c.4389delA:p.K1464Nfs*39,Cdk12:NM_001109628:exon14:c.4362delA:p.K1455Nfs*39"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr11	98420941	12A2p6	cell line	sgMsh2	98420941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	176	0	0	NA	exonic	Erbb2	nonsynonymous SNV	Erbb2:NM_001003817:exon3:c.T302G:p.I101S	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.916609657	1	0.9998345	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	98423069	12A2p6	cell line	sgMsh2	98423069	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	79	0	0	NA	exonic	Erbb2	synonymous SNV	Erbb2:NM_001003817:exon7:c.C837A:p.T279T	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.810336073	1	0.8813695	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr11	98488928	12A2p6	cell line	sgMsh2	98488928	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	138	0	0	NA	exonic	Ikzf3	frameshift deletion	Ikzf3:NM_011771:exon5:c.513delA:p.K171Nfs*87	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	167	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.845760601	1	0.986602	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr11	98917008	12A2p6	cell line	sgMsh2	98917008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	239	0	0	NA	exonic	Cdc6	synonymous SNV	"Cdc6:NM_001025779:exon9:c.A1245G:p.P415P,Cdc6:NM_001362735:exon9:c.A1242G:p.P414P,Cdc6:NM_011799:exon9:c.A1326G:p.P442P"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	1.60E-08	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr11	99780487	12A2p6	cell line	sgMsh2	99780487	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.334	238	0	0	NA	exonic	Krtap4-8	nonsynonymous SNV	Krtap4-8:NM_001085547:exon1:c.G157A:p.V53M	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	1.70E-08	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	99785965	12A2p6	cell line	sgMsh2	99785965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	331	0	0	NA	exonic	Krtap4-9	synonymous SNV	Krtap4-9:NM_001085548:exon1:c.A711G:p.S237S	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.602216972	2	1.91E-09	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr11	99873936	12A2p6	cell line	sgMsh2	99873936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	55	0	0	NA	exonic	Krtap9-1	nonsynonymous SNV	Krtap9-1:NM_015741:exon1:c.T497C:p.V166A	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9959514	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	100413732	12A2p6	cell line	sgMsh2	100413732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	46	0	0	NA	exonic	P3h4	nonsynonymous SNV	"P3h4:NM_001378981:exon3:c.A682G:p.S228G,P3h4:NM_176830:exon3:c.A682G:p.S228G"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9925593	CTG	nonsynonymous	TGC	9	TGCTGCTGC	NA
M3_p20	chr11	100741796	12A2p6	cell line	sgMsh2	100741796	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	107	0	0	NA	exonic	Kcnh4	nonsynonymous SNV	Kcnh4:NM_001081194:exon16:c.C2864A:p.A955D	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998816	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	101165151	12A2p6	cell line	sgMsh2	101165151	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	40	0	0	NA	exonic	Plekhh3	synonymous SNV	"Plekhh3:NM_001346769:exon9:c.C1321A:p.R441R,Plekhh3:NM_146030:exon9:c.C1321A:p.R441R"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9888524	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr11	101317339	12A2p6	cell line	sgMsh2	101317339	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	281	0	0	NA	exonic	Psme3	nonsynonymous SNV	Psme3:NM_011192:exon3:c.T86G:p.L29W	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	1.86E-09	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	137	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999846	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	102268883	12A2p6	cell line	sgMsh2	102268883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	26	0	0	NA	exonic	Asb16	stopgain	Asb16:NM_148953:exon1:c.G61T:p.E21X	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9716191	AGA	nonsynonymous	AG	8	AGAGAGAG	NA
M3_p20	chr11	102353203	12A2p6	cell line	sgMsh2	102353203	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	87	0	0	NA	exonic	Slc4a1	nonsynonymous SNV	Slc4a1:NM_011403:exon16:c.C2099T:p.S700F	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995388	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	102435407	12A2p6	cell line	sgMsh2	102435407	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	114	0	0	NA	exonic	Grn	synonymous SNV	Grn:NM_008175:exon10:c.T1089G:p.P363P	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.996203	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	102435775	12A2p6	cell line	sgMsh2	102435775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	43	0	0	NA	exonic	Grn	nonsynonymous SNV	Grn:NM_008175:exon11:c.T1240C:p.C414R	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9908908	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	102466479	12A2p6	cell line	sgMsh2	102466479	A	-	Deletion	Strelka2;Vardict	2	0.1471	34	0	0	NA	exonic	Itga2b	stopgain	Itga2b:NM_010575:exon6:c.665delT:p.L222fs*0	11qD	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.651368505	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M3_p20	chr11	102884054	12A2p6	cell line	sgMsh2	102884054	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.272	44	0	0	NA	exonic	Ccdc103	nonsynonymous SNV	"Ccdc103:NM_001364757:exon5:c.C274T:p.R92W,Ccdc103:NM_028492:exon5:c.C478T:p.R160W"	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9914846	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	102886351	12A2p6	cell line	sgMsh2	102886351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	120	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.A980G:p.H327R	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.721774754	2	0.8190311	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	103239771	12A2p6	cell line	sgMsh2	103239772	CA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	114	0	0	NA	exonic	Map3k14	frameshift deletion	Map3k14:NM_016896:exon4:c.397_398del:p.C133Pfs*13	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.943178052	NA	NA	GCA	frameshift	NA	NA	NA	-2
M3_p20	chr11	106320885	12A2p6	cell line	sgMsh2	106320885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	118	0	0	NA	exonic	Scn4a	synonymous SNV	Scn4a:NM_133199:exon24:c.T4305C:p.F1435F	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.986232	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr11	107073916	12A2p6	cell line	sgMsh2	107073916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	296	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon11:c.A4106G:p.N1369S,Bptf:NM_176850:exon11:c.A4106G:p.N1369S"	11qE1	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	113624809	12A2p6	cell line	sgMsh2	113624809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.A553G:p.S185G,Sstr2:NM_009217:exon2:c.A553G:p.S185G"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9990218	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	115250142	12A2p6	cell line	sgMsh2	115250142	G	-	Deletion	Strelka2;Vardict	2	0.625	8	0	0	NA	exonic	Grin2c	frameshift deletion	Grin2c:NM_010350:exon15:c.3149delC:p.P1050Rfs*150	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3_p20	chr11	115822071	12A2p6	cell line	sgMsh2	115822071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	89	0	0	NA	exonic	Tsen54	frameshift deletion	Tsen54:NM_029557:exon10:c.1383delA:p.N463Tfs*27	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	45	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9920399	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	116023510	12A2p6	cell line	sgMsh2	116023510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	191	0	0	NA	exonic	H3f3b	nonsynonymous SNV	H3f3b:NM_008211:exon4:c.G308T:p.G103V	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9996103	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	116607343	12A2p6	cell line	sgMsh2	116607343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	35	0	0	NA	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon3:c.A29G:p.N10S,Rhbdf2:NM_172572:exon3:c.A29G:p.N10S"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9844086	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	14	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9378643	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	86	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995064	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	118066351	12A2p6	cell line	sgMsh2	118066351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	98	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon54:c.A8399G:p.Y2800C	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.836904469	1	0.9504988	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	119351006	12A2p6	cell line	sgMsh2	119351006	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	exonic	Sgsh	synonymous SNV	Sgsh:NM_018822:exon3:c.G273A:p.L91L	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9994425	GCA	synonymous	NA	NA	NA	NA
M3_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	70	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.739487018	1	0.5694211	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	119440808	12A2p6	cell line	sgMsh2	119440808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	312	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon29:c.A6845G:p.H2282R	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.991886778	1	1.25E-09	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	14	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9378643	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr11	120011210	12A2p6	cell line	sgMsh2	120011210	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.21	57	0	0	NA	exonic	Aatk	nonsynonymous SNV	"Aatk:NM_001377503:exon8:c.G1828T:p.G610C,Aatk:NM_001198785:exon11:c.G2359T:p.G787C,Aatk:NM_001198787:exon11:c.G2188T:p.G730C,Aatk:NM_007377:exon11:c.G2188T:p.G730C"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.9862472	CCC	nonsynonymous	CCCA	9	CCCACCCAC	NA
M3_p20	chr11	120105448	12A2p6	cell line	sgMsh2	120105448	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	88	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001164799:exon16:c.A2798T:p.E933V,Slc38a10:NM_001164800:exon16:c.A2795T:p.E932V,Slc38a10:NM_001361697:exon16:c.A2573T:p.E858V,Slc38a10:NM_001361698:exon16:c.A2558T:p.E853V,Slc38a10:NM_001164798:exon17:c.A2819T:p.E940V,Slc38a10:NM_001361696:exon17:c.A2816T:p.E939V,Slc38a10:NM_001361699:exon17:c.A2147T:p.E716V,Slc38a10:NM_024249:exon17:c.A2822T:p.E941V"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995692	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	120284409	12A2p6	cell line	sgMsh2	120284409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	41	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon18:c.C5308T:p.R1770C	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9895776	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	55	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.963284	TAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	236	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	1.94E-08	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr11	120377089	12A2p6	cell line	sgMsh2	120377089	A	-	Deletion	Mutect2;Vardict	2	0.174	33	0	0	NA	exonic	Faap100	stopgain	Faap100:NM_027980:exon3:c.857delT:p.L286fs*0	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	0.770483479	NA	NA	CAA	nonsynonymous	NA	NA	NA	-1
M3_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	79	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	2	1	1	0.9992058	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	120595036	12A2p6	cell line	sgMsh2	120595036	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.273	138	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon5:c.A697G:p.K233E	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999856	TTT	nonsynonymous	GCT	9	GCTGCTGCT	NA
M3_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	207	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr11	121448988	12A2p6	cell line	sgMsh2	121448988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	174	0	0	NA	exonic	Fn3k	nonsynonymous SNV	Fn3k:NM_022014:exon5:c.T575C:p.L192P	11qE2	chr11-83185009-121956668	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	3501299	12A2p6	cell line	sgMsh2	3501299	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	142	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3040G:p.R1014G,Asxl2:NM_001270988:exon12:c.A3184G:p.R1062G"	12qA1.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	3591924	12A2p6	cell line	sgMsh2	3591924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	378	0	0	NA	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001162465:exon3:c.T86C:p.V29A,Dtnb:NM_001355528:exon3:c.T86C:p.V29A,Dtnb:NM_001374710:exon3:c.T86C:p.V29A,Dtnb:NM_007886:exon3:c.T86C:p.V29A"	12qA1.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	4974217	12A2p6	cell line	sgMsh2	4974217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	160	0	0	NA	exonic	Atad2b	nonsynonymous SNV	Atad2b:NM_001362349:exon16:c.T2066C:p.I689T	12qA1.1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.398525938	3	0.8889873	ATC	nonsynonymous	CAA	8	CAACAACA	NA
M3_p20	chr12	5091439	12A2p6	cell line	sgMsh2	5091439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	113	0	0	NA	exonic	Klhl29	nonsynonymous SNV	Klhl29:NM_001164493:exon9:c.A1544G:p.Y515C	12qA1.1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999213	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	13362593	12A2p6	cell line	sgMsh2	13362593	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	298	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon25:c.T2912G:p.I971R	12qA1.1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.588932775	2	3.22E-09	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	21290291	12A2p6	cell line	sgMsh2	21290291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	257	0	0	NA	exonic	Cpsf3	nonsynonymous SNV	"Cpsf3:NM_001364373:exon2:c.T94C:p.F32L,Cpsf3:NM_018813:exon2:c.T94C:p.F32L"	12qA1.3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	5.40E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	28737836	12A2p6	cell line	sgMsh2	28737836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	84	0	0	NA	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon3:c.A1247G:p.K416R,Trappc12:NM_001161411:exon3:c.A1247G:p.K416R,Trappc12:NM_001377005:exon3:c.A1247G:p.K416R,Trappc12:NM_001377006:exon3:c.A1247G:p.K416R,Trappc12:NM_001377007:exon3:c.A1247G:p.K416R,Trappc12:NM_178811:exon3:c.A1247G:p.K416R"	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9994345	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	28863069	12A2p6	cell line	sgMsh2	28863069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	176	0	0	NA	exonic	Eipr1	nonsynonymous SNV	"Eipr1:NM_001379230:exon5:c.G468T:p.W156C,Eipr1:NM_201357:exon7:c.G768T:p.W256C,Eipr1:NM_001379229:exon8:c.G468T:p.W156C"	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999989	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	29827788	12A2p6	cell line	sgMsh2	29827788	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	182	0	0	NA	exonic	Myt1l	nonsynonymous SNV	"Myt1l:NM_001361658:exon9:c.A1374C:p.R458S,Myt1l:NM_001361660:exon9:c.A1374C:p.R458S,Myt1l:NM_001093775:exon10:c.A1437C:p.R479S,Myt1l:NM_001093776:exon10:c.A1437C:p.R479S,Myt1l:NM_001093778:exon10:c.A1434C:p.R478S,Myt1l:NM_001361655:exon10:c.A1437C:p.R479S,Myt1l:NM_001361656:exon10:c.A1437C:p.R479S,Myt1l:NM_001361657:exon10:c.A1437C:p.R479S,Myt1l:NM_001361659:exon10:c.A1437C:p.R479S,Myt1l:NM_008666:exon10:c.A1437C:p.R479S"	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.95646225	1	0.9999891	GAA	nonsynonymous	AAATCC	13	AAATCCAAATCCA	NA
M3_p20	chr12	30226882	12A2p6	cell line	sgMsh2	30226882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	0	0	NA	exonic	Sntg2	synonymous SNV	"Sntg2:NM_001324521:exon13:c.C471T:p.S157S,Sntg2:NM_001324519:exon14:c.C993T:p.S331S,Sntg2:NM_001324520:exon14:c.C975T:p.S325S,Sntg2:NM_172951:exon14:c.C1170T:p.S390S"	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997499	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr12	31490488	12A2p6	cell line	sgMsh2	31490488	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	343	0	0	NA	exonic	Cbll1	frameshift deletion	"Cbll1:NM_001253847:exon5:c.420delA:p.G141Efs*50,Cbll1:NM_001253848:exon5:c.408delA:p.G137Efs*50,Cbll1:NM_134048:exon5:c.417delA:p.G140Efs*50"	12qA2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	156	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999958	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	38630684	12A2p6	cell line	sgMsh2	38630684	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	114	0	0	NA	exonic	Dgkb	frameshift deletion	"Dgkb:NM_001361688:exon25:c.2382delG:p.E795delinsSEPPSGEI,Dgkb:NM_178681:exon25:c.2382delG:p.E795delinsSEPPSGEI,Dgkb:NM_001361686:exon26:c.2403delG:p.E802delinsSEPPSGEI"	12qA3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M3_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	181	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999992	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	44590222	12A2p6	cell line	sgMsh2	44590222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	169	0	0	NA	exonic	Nrcam	nonsynonymous SNV	"Nrcam:NM_001146031:exon26:c.A3227G:p.K1076R,Nrcam:NM_176930:exon29:c.A3437G:p.K1146R"	12qB2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999983	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	51371627	12A2p6	cell line	sgMsh2	51371627	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	111	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001167964:exon13:c.A1453C:p.K485Q,G2e3:NM_001015099:exon14:c.A1735C:p.K579Q,G2e3:NM_001167963:exon15:c.A1804C:p.K602Q"	12qB3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999098	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	51774736	12A2p6	cell line	sgMsh2	51774736	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	131	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon21:c.T3169G:p.L1057V	12qB3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999768	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	54	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	2	1	1	0.9956677	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	52567084	12A2p6	cell line	sgMsh2	52567084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	179	0	0	NA	exonic	Arhgap5	nonsynonymous SNV	Arhgap5:NM_009706:exon6:c.A4258G:p.R1420G	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.389669806	3	0.9668118	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	96	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M3_p20	chr12	55490467	12A2p6	cell line	sgMsh2	55490467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	107	0	0	NA	exonic	Nfkbia	nonsynonymous SNV	Nfkbia:NM_010907:exon5:c.T836C:p.M279T	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.553508247	2	0.9990504	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	56718313	12A2p6	cell line	sgMsh2	56718313	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	36	0	0	NA	exonic	Slc25a21	synonymous SNV	"Slc25a21:NM_172577:exon8:c.C609A:p.T203T,Slc25a21:NM_001167976:exon9:c.C630A:p.T210T"	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9854186	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr12	57457009	12A2p6	cell line	sgMsh2	57457009	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	140	0	0	NA	exonic	Mipol1	nonsynonymous SNV	Mipol1:NM_001164370:exon10:c.T962G:p.L321R	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.301108486	3	0.9998839	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	59072628	12A2p6	cell line	sgMsh2	59072628	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	118	0	0	NA	exonic	Pnn	nonsynonymous SNV	Pnn:NM_008891:exon9:c.A1996G:p.T666A	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.354245278	3	0.9816936	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.354	143	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3_p20	chr12	65161578	12A2p6	cell line	sgMsh2	65161578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	218	0	0	NA	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon2:c.A360C:p.K120N	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	65226601	12A2p6	cell line	sgMsh2	65226601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	196	0	0	NA	exonic	Wdr20rt	synonymous SNV	Wdr20rt:NM_027614:exon1:c.A837G:p.G279G	12qC1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.380813674	3	0.9916922	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.146	114	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.646497632	2	0.9864163	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	69307199	12A2p6	cell line	sgMsh2	69307199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	115	0	0	NA	exonic	Klhdc2	synonymous SNV	Klhdc2:NM_027117:exon9:c.A783G:p.Q261Q	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.420666268	2	0.5792445	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr12	69607335	12A2p6	cell line	sgMsh2	69607335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	175	0	0	NA	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon14:c.A2239G:p.S747G	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999988	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	69740987	12A2p6	cell line	sgMsh2	69740987	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	0	0	NA	exonic	Dmac2l	nonsynonymous SNV	"Dmac2l:NM_001361691:exon3:c.G196T:p.G66C,Dmac2l:NM_026536:exon3:c.G196T:p.G66C,Dmac2l:NM_001361690:exon4:c.G196T:p.G66C"	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999313	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	69818044	12A2p6	cell line	sgMsh2	69818044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	363	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1863C:p.K621N	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	70897432	12A2p6	cell line	sgMsh2	70897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	234	0	0	NA	exonic	Frmd6	nonsynonymous SNV	Frmd6:NM_028127:exon13:c.A1583G:p.Q528R	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	2.20E-08	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	71187420	12A2p6	cell line	sgMsh2	71187420	C	-	Deletion	Mutect2;Vardict	2	0.076	131	0	0	NA	exonic	2700049A03Rik	frameshift deletion	"2700049A03Rik:NM_001163378:exon22:c.3193delC:p.C1067Afs*5,2700049A03Rik:NM_029818:exon22:c.3193delC:p.C1067Afs*5"	12qC2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.336533014	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3_p20	chr12	71975237	12A2p6	cell line	sgMsh2	71975237	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	170	0	0	NA	exonic	Daam1	nonsynonymous SNV	"Daam1:NM_001286452:exon18:c.A2208C:p.E736D,Daam1:NM_026102:exon19:c.A2235C:p.E745D,Daam1:NM_172464:exon19:c.A2235C:p.E745D"	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.345389146	3	0.999274	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	72304133	12A2p6	cell line	sgMsh2	72304133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	Rtn1	nonsynonymous SNV	Rtn1:NM_153457:exon3:c.T1301A:p.F434Y	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9973041	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	72449680	12A2p6	cell line	sgMsh2	72449680	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	196	0	0	NA	exonic	Lrrc9	synonymous SNV	"Lrrc9:NM_001142728:exon3:c.T81C:p.V27V,Lrrc9:NM_001142729:exon3:c.T81C:p.V27V,Lrrc9:NM_030070:exon3:c.T81C:p.V27V"	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.278968156	3	0.9999998	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr12	72477207	12A2p6	cell line	sgMsh2	72477207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	258	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon18:c.A2186G:p.N729S,Lrrc9:NM_030070:exon18:c.A2189G:p.N730S"	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	5.11E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	73108786	12A2p6	cell line	sgMsh2	73108786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	143	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.C1406T:p.P469L,Six4:NM_001362272:exon3:c.C1382T:p.P461L"	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.473803059	2	0.984742	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	76329067	12A2p6	cell line	sgMsh2	76329067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	356	0	0	NA	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.A1251T:p.E417D	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.261255892	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	76329312	12A2p6	cell line	sgMsh2	76329312	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	406	0	0	NA	exonic	Akap5	nonsynonymous SNV	Akap5:NM_001101471:exon2:c.C1496T:p.A499V	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	76564382	12A2p6	cell line	sgMsh2	76564382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	54	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon6:c.T692C:p.V231A	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9956677	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	78845245	12A2p6	cell line	sgMsh2	78845245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	190	0	0	NA	exonic	Atp6v1d	nonsynonymous SNV	Atp6v1d:NM_023721:exon8:c.G583A:p.E195K	12qC3	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	TCT	nonsynonymous	CT	9	CTCTCTCTC	NA
M3_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	242	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.265683958	3	1.49E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	81559820	12A2p6	cell line	sgMsh2	81559820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	190	0	0	NA	exonic	Adam21	synonymous SNV	Adam21:NM_020330:exon2:c.G1167A:p.K389K	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr12	81734093	12A2p6	cell line	sgMsh2	81734093	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	91	0	0	NA	exonic	Map3k9	nonsynonymous SNV	"Map3k9:NM_001174107:exon5:c.G1292T:p.R431M,Map3k9:NM_177395:exon5:c.G1292T:p.R431M"	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.947606118	1	0.9982039	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	83555047	12A2p6	cell line	sgMsh2	83555047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	134	0	0	NA	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon5:c.T286C:p.C96R,Zfyve1:NM_001359166:exon8:c.T1531C:p.C511R,Zfyve1:NM_183154:exon8:c.T1531C:p.C511R,Zfyve1:NM_001359167:exon9:c.T1531C:p.C511R"	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999811	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	83774651	12A2p6	cell line	sgMsh2	83774651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	53	0	0	NA	exonic	Papln	synonymous SNV	"Papln:NM_001205343:exon9:c.A756G:p.T252T,Papln:NM_130887:exon9:c.A756G:p.T252T"	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.805908007	1	0.863662	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr12	85290268	12A2p6	cell line	sgMsh2	85290268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	67	0	0	NA	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon2:c.A698G:p.K233R	12qD1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9982057	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	85608172	12A2p6	cell line	sgMsh2	85608172	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	18	0	0	NA	exonic	Jdp2	nonsynonymous SNV	"Jdp2:NM_001205052:exon2:c.C8A:p.P3H,Jdp2:NM_001205053:exon2:c.C8A:p.P3H,Jdp2:NM_030887:exon2:c.C8A:p.P3H"	12qD2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9520486	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	85876550	12A2p6	cell line	sgMsh2	85876550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	338	0	0	NA	exonic	Ttll5	nonsynonymous SNV	"Ttll5:NM_001364628:exon9:c.T284C:p.L95P,Ttll5:NM_001081423:exon10:c.T800C:p.L267P,Ttll5:NM_001347395:exon10:c.T800C:p.L267P,Ttll5:NM_001364624:exon10:c.T800C:p.L267P,Ttll5:NM_001364625:exon10:c.T800C:p.L267P,Ttll5:NM_001364626:exon10:c.T800C:p.L267P,Ttll5:NM_001364627:exon10:c.T506C:p.L169P"	12qD2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.389669806	3	0.9995553	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	87369043	12A2p6	cell line	sgMsh2	87369043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	291	0	0	NA	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon2:c.T209C:p.V70A	12qD2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	1.44E-09	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	98669232	12A2p6	cell line	sgMsh2	98669232	A	-	Deletion	Mutect2;Vardict	2	0.128	120	0	0	NA	exonic	Spata7	frameshift deletion	"Spata7:NM_001289573:exon10:c.809delA:p.N271Mfs*3,Spata7:NM_001289572:exon11:c.1214delA:p.N406Mfs*3,Spata7:NM_001289574:exon12:c.992delA:p.N332Mfs*3,Spata7:NM_178914:exon12:c.1310delA:p.N438Mfs*3"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.566792445	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	109	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.6376415	2	0.9872622	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	229	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.433950465	2	0.6870762	TGA	synonymous	NA	NA	NA	NA
M3_p20	chr12	98873139	12A2p6	cell line	sgMsh2	98873139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	185	0	0	NA	exonic	Eml5	nonsynonymous SNV	Eml5:NM_001081191:exon7:c.T914C:p.I305T	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999994	AAT	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr12	100853268	12A2p6	cell line	sgMsh2	100853268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	294	0	0	NA	exonic	Dglucy	nonsynonymous SNV	"Dglucy:NM_001361023:exon8:c.A899G:p.D300G,Dglucy:NM_145448:exon9:c.A1238G:p.D413G,Dglucy:NM_001361020:exon10:c.A1238G:p.D413G,Dglucy:NM_001361017:exon11:c.A1328G:p.D443G"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.29668042	3	1.50E-09	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	58	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.921037723	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M3_p20	chr12	101706587	12A2p6	cell line	sgMsh2	101706587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	123	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon3:c.T94C:p.S32P,Tc2n:NM_028924:exon3:c.T94C:p.S32P"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999601	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	114	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999264	TTC	synonymous	NA	NA	NA	NA
M3_p20	chr12	102489507	12A2p6	cell line	sgMsh2	102489507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	129	0	0	NA	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon9:c.T1703C:p.L568P,Golga5:NM_013747:exon9:c.T1703C:p.L568P"	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.699634424	2	0.9389833	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	103095026	12A2p6	cell line	sgMsh2	103095026	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	138	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon26:c.C3643T:p.R1215C	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999856	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	104696727	12A2p6	cell line	sgMsh2	104696727	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	128	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.T4594C:p.Y1532H	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.34096108	3	0.9953896	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.216	102	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.95646225	NA	NA	TGT	frameshift	T	5	TTTTT	1
M3_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	118	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.999944	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	108898193	12A2p6	cell line	sgMsh2	108898193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	37	0	0	NA	exonic	Wdr25	nonsynonymous SNV	Wdr25:NM_177602:exon2:c.T263C:p.L88P	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9863641	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	111543168	12A2p6	cell line	sgMsh2	111543168	T	G	SNV	Mutect2;Vardict	2	0.051	230	0	0	NA	exonic	Eif5	nonsynonymous SNV	"Eif5:NM_173363:exon10:c.T969G:p.H323Q,Eif5:NM_178041:exon10:c.T969G:p.H323Q"	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.225831365	3	1.01E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.142	41	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.628785368	2	0.6577529	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr12	116142882	12A2p6	cell line	sgMsh2	116142882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	336	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon11:c.A1097G:p.Q366R	12qF2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.402954004	3	0.994681	CAG	nonsynonymous	TTCC	8	TTCCTTCC	NA
M3_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	113	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999213	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M3_p20	chr12	116407279	12A2p6	cell line	sgMsh2	116407279	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	260	0	0	NA	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon3:c.T47C:p.V16A	12qF2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.199262969	3	1.00E-09	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M3_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Vardict	2	0.103	175	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3897527-119202477	3	2	1	0.91	4.029540036	NA	1	0.456090795	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3_p20	chr13	3941251	12A2p6	cell line	sgMsh2	3941251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	116	0	0	NA	exonic	Ucn3	nonsynonymous SNV	Ucn3:NM_031250:exon2:c.A400G:p.M134V	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.801479941	1	0.853969	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	6614712	12A2p6	cell line	sgMsh2	6614712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	368	0	0	NA	exonic	Pfkp	nonsynonymous SNV	"Pfkp:NM_001291071:exon8:c.A859G:p.I287V,Pfkp:NM_019703:exon8:c.A859G:p.I287V"	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	8570409	12A2p6	cell line	sgMsh2	8570409	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	73	0	0	NA	exonic	Adarb2	nonsynonymous SNV	"Adarb2:NM_001289530:exon3:c.G930T:p.K310N,Adarb2:NM_052977:exon3:c.G930T:p.K310N"	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9988061	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	9551815	12A2p6	cell line	sgMsh2	9551815	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	114	0	0	NA	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon7:c.G809A:p.R270Q	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999264	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	9662244	12A2p6	cell line	sgMsh2	9662244	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	257	0	0	NA	exonic	Dip2c	frameshift deletion	Dip2c:NM_001081426:exon36:c.4402delA:p.S1469Vfs*13	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3_p20	chr13	11799810	12A2p6	cell line	sgMsh2	11799810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	130	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon20:c.A2075G:p.H692R	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999752	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	12434499	12A2p6	cell line	sgMsh2	12434499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	207	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon41:c.A5877G:p.K1959K	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr13	13002264	12A2p6	cell line	sgMsh2	13002264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	409	0	0	NA	exonic	Prl2c2	nonsynonymous SNV	Prl2c2:NM_031191:exon2:c.A77C:p.N26T	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	13708070	12A2p6	cell line	sgMsh2	13708070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	129	0	0	NA	exonic	Lyst	synonymous SNV	Lyst:NM_010748:exon34:c.T8619C:p.A2873A	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999735	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	13775544	12A2p6	cell line	sgMsh2	13775544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	248	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon51:c.A11071G:p.I3691V	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.819192205	1	0.9634351	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	14248417	12A2p6	cell line	sgMsh2	14248417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	194	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon24:c.G4039T:p.G1347C	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	14317081	12A2p6	cell line	sgMsh2	14317081	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	24	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.T1325G:p.L442R	13qA1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9676163	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	21142224	12A2p6	cell line	sgMsh2	21142224	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	259	0	0	NA	exonic	Olfr1368	frameshift deletion	Olfr1368:NM_146534:exon1:c.832delT:p.Y278Tfs*10	13qA2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr13	21787561	12A2p6	cell line	sgMsh2	21787561	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	239	0	0	NA	exonic	H2bc22	nonsynonymous SNV	"H2bc22:NM_001290466:exon1:c.A47C:p.K16T,H2bc22:NM_178202:exon1:c.A47C:p.K16T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9989326	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	22179382	12A2p6	cell line	sgMsh2	22179382	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.159	495	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A201G:p.A67A	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.70406249	2	0.9999996	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	22179385	12A2p6	cell line	sgMsh2	22179385	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.154	498	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A198G:p.V66V	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.68192216	2	9.16E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr13	22278762	12A2p6	cell line	sgMsh2	22278762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	264	0	0	NA	exonic	Vmn1r195	nonsynonymous SNV	Vmn1r195:NM_134223:exon1:c.T401G:p.L134R	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	1.99E-08	CTC	nonsynonymous	CTC	11	CTCCTCCTCCT	NA
M3_p20	chr13	22293238	12A2p6	cell line	sgMsh2	22293238	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	204	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.C46A:p.L16I	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	22592687	12A2p6	cell line	sgMsh2	22592687	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	437	0	0	NA	exonic	Vmn1r205	stopgain	Vmn1r205:NM_134217:exon1:c.A244T:p.R82X	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.9999989	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	22592745	12A2p6	cell line	sgMsh2	22592745	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	456	0	0	NA	exonic	Vmn1r205	synonymous SNV	Vmn1r205:NM_134217:exon1:c.A186C:p.T62T	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	4.31E-08	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	22620804	12A2p6	cell line	sgMsh2	22620804	T	C	SNV	Mutect2;MuSe;Vardict	3	0.101	571	0	0	NA	exonic	Vmn1r206	nonsynonymous SNV	Vmn1r206:NM_134216:exon1:c.A232G:p.I78V	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.447234663	2	0.978599	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	399	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	23684273	12A2p6	cell line	sgMsh2	23684273	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	110	0	0	NA	exonic	H2bc4	synonymous SNV	"H2bc4:NM_001290380:exon1:c.C42A:p.G14G,H2bc4:NM_023422:exon1:c.C42A:p.G14G"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.473803059	2	0.9722315	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr13	23934081	12A2p6	cell line	sgMsh2	23934081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	102	0	0	NA	exonic	H2bc1	nonsynonymous SNV	H2bc1:NM_175663:exon1:c.A76G:p.K26E	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.9997422	TTT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr13	24069691	12A2p6	cell line	sgMsh2	24069691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	337	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon27:c.G2444A:p.R815H,Carmil1:NM_001384122:exon27:c.G2444A:p.R815H,Carmil1:NM_026825:exon28:c.G2456A:p.R819H"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	24073941	12A2p6	cell line	sgMsh2	24073941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	278	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon26:c.A2327C:p.K776T,Carmil1:NM_001384122:exon26:c.A2327C:p.K776T,Carmil1:NM_026825:exon27:c.A2339C:p.K780T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.770483479	2	0.7657057	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	24137141	12A2p6	cell line	sgMsh2	24137141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	416	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon11:c.T870G:p.D290E,Carmil1:NM_001384122:exon11:c.T870G:p.D290E,Carmil1:NM_026825:exon11:c.T870G:p.D290E"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.557936313	2	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	27202423	12A2p6	cell line	sgMsh2	27202423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	300	0	0	NA	exonic	Prl3c1	synonymous SNV	"Prl3c1:NM_001163218:exon4:c.T330C:p.A110A,Prl3c1:NM_013766:exon4:c.T390C:p.A130A"	13qA3.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.999998	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	32806806	12A2p6	cell line	sgMsh2	32806806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	110	0	0	NA	exonic	Wrnip1	synonymous SNV	Wrnip1:NM_030215:exon3:c.T1047C:p.G349G	13qA3.2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.646497632	2	0.9832571	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	33332229	12A2p6	cell line	sgMsh2	33332229	T	-	Deletion	Mutect2;Vardict	2	0.429	5	0	0	NA	exonic	Serpinb9f	frameshift deletion	Serpinb9f:NM_183197:exon6:c.678delT:p.L227fs*0	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3_p20	chr13	33395772	12A2p6	cell line	sgMsh2	33395772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	638	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon1:c.T2C:p.M1T	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	34075091	12A2p6	cell line	sgMsh2	34075091	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	61	0	0	NA	exonic	Tubb2a	nonsynonymous SNV	Tubb2a:NM_009450:exon4:c.T715A:p.C239S	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9973041	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M3_p20	chr13	38023126	12A2p6	cell line	sgMsh2	38023126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	223	0	0	NA	exonic	Cage1	nonsynonymous SNV	Cage1:NM_027724:exon5:c.A1060G:p.T354A	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	4.54E-08	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	38193434	12A2p6	cell line	sgMsh2	38193434	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	42	0	0	NA	exonic	Dsp	synonymous SNV	Dsp:NM_023842:exon23:c.C5194T:p.L1732L	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9902561	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr13	40280876	12A2p6	cell line	sgMsh2	40280876	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	109	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon2:c.A50C:p.K17T	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998967	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	41135198	12A2p6	cell line	sgMsh2	41135198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	85	0	0	NA	exonic	Sycp2l	nonsynonymous SNV	Sycp2l:NM_001324525:exon8:c.A725G:p.N242S	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994717	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	41312102	12A2p6	cell line	sgMsh2	41312102	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	242	0	0	NA	exonic	Nedd9	synonymous SNV	"Nedd9:NM_017464:exon7:c.G2061A:p.K687K,Nedd9:NM_001111324:exon8:c.G2061A:p.K687K"	13qA3.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9989984	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr13	43554995	12A2p6	cell line	sgMsh2	43554995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	109	0	0	NA	exonic	Mcur1	nonsynonymous SNV	Mcur1:NM_001081059:exon2:c.T379C:p.C127R	13qA4	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998967	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	44923269	12A2p6	cell line	sgMsh2	44923269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	111	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon9:c.A691G:p.M231V	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999098	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	46778973	12A2p6	cell line	sgMsh2	46778973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	306	0	0	NA	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon26:c.A3243T:p.V1081V	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	6.96E-09	TTA	synonymous	TC	9	TCTCTCTCT	NA
M3_p20	chr13	48826109	12A2p6	cell line	sgMsh2	48826109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	208	0	0	NA	exonic	Phf2	nonsynonymous SNV	Phf2:NM_011078:exon5:c.A545G:p.Y182C	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	48889928	12A2p6	cell line	sgMsh2	48889928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	26	0	0	NA	exonic	Fam120a	nonsynonymous SNV	Fam120a:NM_001033268:exon14:c.C2489T:p.A830V	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9716191	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	49446385	12A2p6	cell line	sgMsh2	49446385	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	98	0	0	NA	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon9:c.T866G:p.F289C,Ippk:NM_199056:exon9:c.T719G:p.F240C"	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997817	TTC	nonsynonymous	CTT	10	CTTCTTCTTC	NA
M3_p20	chr13	49464769	12A2p6	cell line	sgMsh2	49464769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	189	0	0	NA	exonic	Cenpp	nonsynonymous SNV	Cenpp:NM_025495:exon7:c.T659C:p.V220A	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9969193	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	49664072	12A2p6	cell line	sgMsh2	49664072	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	271	0	0	NA	exonic	Nol8	frameshift deletion	Nol8:NM_001271397:exon8:c.2377delA:p.T795Hfs*27	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.925465789	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr13	49717938	12A2p6	cell line	sgMsh2	49717938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	179	0	0	NA	exonic	Iars	synonymous SNV	Iars:NM_172015:exon20:c.T2049C:p.H683H	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999991	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	80	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9992579	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	50703043	12A2p6	cell line	sgMsh2	50703043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	304	0	0	NA	exonic	Gm8765	nonsynonymous SNV	Gm8765:NM_001244649:exon4:c.T2716C:p.Y906H	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	1.26E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	52611067	12A2p6	cell line	sgMsh2	52611067	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	53	0	0	NA	exonic	Syk	frameshift deletion	"Syk:NM_001198977:exon2:c.229delG:p.G78Afs*44,Syk:NM_011518:exon2:c.229delG:p.G78Afs*44"	13qA5	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3_p20	chr13	53344835	12A2p6	cell line	sgMsh2	53344835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	44	0	0	NA	exonic	Sptlc1	nonsynonymous SNV	Sptlc1:NM_009269:exon9:c.A854G:p.H285R	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.819192205	1	0.8841686	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Vardict	2	0.185	43	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.819192205	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3_p20	chr13	55718115	12A2p6	cell line	sgMsh2	55718115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	47	0	0	NA	exonic	Txndc15	nonsynonymous SNV	Txndc15:NM_175150:exon2:c.T391C:p.Y131H	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	55828462	12A2p6	cell line	sgMsh2	55828462	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	56	0	0	NA	exonic	Pitx1	nonsynonymous SNV	Pitx1:NM_011097:exon2:c.A383C:p.N128T	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9962165	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	56104303	12A2p6	cell line	sgMsh2	56104303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	76	0	0	NA	exonic	Macroh2a1	nonsynonymous SNV	"Macroh2a1:NM_001159513:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159514:exon4:c.A476G:p.K159R,Macroh2a1:NM_001159515:exon4:c.A476G:p.K159R,Macroh2a1:NM_012015:exon4:c.A476G:p.K159R"	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.828048337	1	0.9211007	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	56804540	12A2p6	cell line	sgMsh2	56804540	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	0	0	NA	exonic	Trpc7	nonsynonymous SNV	"Trpc7:NM_001302372:exon7:c.G1817A:p.G606D,Trpc7:NM_012035:exon7:c.G1817A:p.G606D,Trpc7:NM_001302373:exon8:c.G662A:p.G221D"	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999543	ACC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	58409075	12A2p6	cell line	sgMsh2	58409075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	82	0	0	NA	exonic	Rmi1	synonymous SNV	"Rmi1:NM_028904:exon3:c.T1137C:p.S379S,Rmi1:NM_001168248:exon4:c.T1137C:p.S379S"	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.774911545	1	0.7349102	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr13	58558259	12A2p6	cell line	sgMsh2	58558259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	253	0	0	NA	exonic	Slc28a3	synonymous SNV	Slc28a3:NM_022317:exon17:c.A1935G:p.V645V	13qB1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	6.78E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr13	59782315	12A2p6	cell line	sgMsh2	59782315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	58	0	0	NA	exonic	Tut7	nonsynonymous SNV	"Tut7:NM_001373962:exon26:c.A4111G:p.T1371A,Tut7:NM_001373963:exon26:c.A4111G:p.T1371A,Tut7:NM_001373964:exon26:c.A4111G:p.T1371A,Tut7:NM_153538:exon26:c.A4111G:p.T1371A"	13qB2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.996696	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	60176082	12A2p6	cell line	sgMsh2	60176082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	29	0	0	NA	exonic	Gas1	nonsynonymous SNV	Gas1:NM_008086:exon1:c.A860G:p.N287S	13qB2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9767356	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	60730966	12A2p6	cell line	sgMsh2	60730966	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	116	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon17:c.G1768A:p.A590T,Dapk1:NM_029653:exon17:c.G1768A:p.A590T,Dapk1:NM_134062:exon17:c.G1768A:p.A590T"	13qB2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.9989605	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	61197629	12A2p6	cell line	sgMsh2	61197629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	180	0	0	NA	exonic	Cts6	nonsynonymous SNV	Cts6:NM_021445:exon6:c.A653C:p.N218T	13qB2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9998924	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	61568721	12A2p6	cell line	sgMsh2	61568721	T	-	Deletion	Mutect2;Vardict	2	0.121	225	0	0	NA	exonic	Cts3	stopgain	"Cts3:NM_026906:exon2:c.100delA:p.I34fs*0,Cts3:NM_054092:exon2:c.100delA:p.I34fs*0"	13qB2	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.535795983	NA	NA	ATT	nonsynonymous	TATTT	11	TATTTTATTTT	-1
M3_p20	chr13	63033045	12A2p6	cell line	sgMsh2	63033045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	148	0	0	NA	exonic	Aopep	nonsynonymous SNV	"Aopep:NM_001289924:exon3:c.T820C:p.S274P,Aopep:NM_001289926:exon3:c.T820C:p.S274P"	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999927	ATC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr13	63543180	12A2p6	cell line	sgMsh2	63543180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	165	0	0	NA	exonic	Ptch1	nonsynonymous SNV	"Ptch1:NM_001328514:exon7:c.A773G:p.N258S,Ptch1:NM_008957:exon7:c.A929G:p.N310S"	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999977	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	64794243	12A2p6	cell line	sgMsh2	64794243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	173	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon5:c.A672G:p.I224M	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999987	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	64921192	12A2p6	cell line	sgMsh2	64921193	TT	CC	DBS	Mutect2;Vardict	2	0.324	48	0	0	NA	exonic	Spata31	nonframeshift substitution	Spata31:NM_030047:exon3:c.1153_1154CC:p.L385P	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	65194254	12A2p6	cell line	sgMsh2	65194254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	110	0	0	NA	exonic	Nlrp4f	nonsynonymous SNV	Nlrp4f:NM_175290:exon3:c.C1576T:p.H526Y	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999034	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	66956436	12A2p6	cell line	sgMsh2	66956436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	256	0	0	NA	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A371G:p.E124G	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	5.71E-09	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	198	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.987458712	NA	NA	TAG	frameshift	NA	NA	NA	-1
M3_p20	chr13	70767871	12A2p6	cell line	sgMsh2	70767871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	86	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon16:c.A2444G:p.N815S	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9497766	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	70768603	12A2p6	cell line	sgMsh2	70768603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	172	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon15:c.A2269G:p.N757D	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9979768	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	73982678	12A2p6	cell line	sgMsh2	73982678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	235	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.T875C:p.L292P	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9999981	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	73982683	12A2p6	cell line	sgMsh2	73982683	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	222	0	0	NA	exonic	Zdhhc11	nonsynonymous SNV	Zdhhc11:NM_027704:exon7:c.C880A:p.L294I	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9999964	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	237	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.81E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	76135249	12A2p6	cell line	sgMsh2	76135249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.263	125	0	0	NA	exonic	Ttc37	nonsynonymous SNV	Ttc37:NM_001081352:exon24:c.T2459C:p.L820P	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999652	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	76202072	12A2p6	cell line	sgMsh2	76202072	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	133	0	0	NA	exonic	Fam81b	nonsynonymous SNV	Fam81b:NM_001370926:exon10:c.G1173T:p.E391D	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999798	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	77259933	12A2p6	cell line	sgMsh2	77259933	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.164	128	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon7:c.C1320A:p.S440S	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.72620282	2	0.8225924	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr13	77761927	12A2p6	cell line	sgMsh2	77761927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	115	0	0	NA	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163419:exon3:c.G160A:p.A54T,Fam172a:NM_001163420:exon3:c.G160A:p.A54T,Fam172a:NM_138312:exon4:c.G298A:p.A100T"	13qC1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	0.9998404	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	81479769	12A2p6	cell line	sgMsh2	81479769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	272	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon53:c.C10972T:p.L3658L	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	2.59E-09	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr13	81487874	12A2p6	cell line	sgMsh2	81487874	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	158	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon50:c.C10515A:p.S3505S	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.721774754	2	0.9273663	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr13	81523753	12A2p6	cell line	sgMsh2	81523753	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	80	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon31:c.A6722C:p.E2241A	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9992579	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	131	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999768	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	81669464	12A2p6	cell line	sgMsh2	81669464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	298	0	0	NA	exonic	Lysmd3	nonsynonymous SNV	Lysmd3:NM_030257:exon3:c.G559A:p.A187T	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.27E-09	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	84294754	12A2p6	cell line	sgMsh2	84294754	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	118	0	0	NA	exonic	Tmem161b	frameshift deletion	"Tmem161b:NM_001361908:exon11:c.957delA:p.N321Tfs*14,Tmem161b:NM_001361909:exon11:c.792delA:p.N266Tfs*14,Tmem161b:NM_001361911:exon12:c.792delA:p.N266Tfs*14,Tmem161b:NM_175187:exon12:c.1338delA:p.N448Tfs*14"	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr13	86045853	12A2p6	cell line	sgMsh2	86045853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	138	0	0	NA	exonic	Cox7c	nonsynonymous SNV	Cox7c:NM_007749:exon2:c.T92C:p.V31A	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9746638	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	89608035	12A2p6	cell line	sgMsh2	89608035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	70	0	0	NA	exonic	Hapln1	synonymous SNV	Hapln1:NM_013500:exon5:c.T957C:p.P319P	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9985363	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr13	92368285	12A2p6	cell line	sgMsh2	92368285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	94	0	0	NA	exonic	Dhfr	nonsynonymous SNV	Dhfr:NM_010049:exon5:c.A470G:p.Y157C	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997135	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	93498393	12A2p6	cell line	sgMsh2	93498393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	92	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.A914G:p.D305G	13qC3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.74834315	1	0.5228773	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	95632131	12A2p6	cell line	sgMsh2	95632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	136	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon33:c.A4260G:p.K1420K	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999835	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr13	95707884	12A2p6	cell line	sgMsh2	95707884	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.315	113	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1515C:p.K505N	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999213	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	95707886	12A2p6	cell line	sgMsh2	95707886	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.315	113	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon13:c.A1513C:p.K505Q	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999213	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	95716096	12A2p6	cell line	sgMsh2	95716096	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.144	150	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon12:c.A1318T:p.I440F	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.6376415	2	0.9987088	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	95716136	12A2p6	cell line	sgMsh2	95716136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	164	0	0	NA	exonic	Iqgap2	synonymous SNV	Iqgap2:NM_027711:exon12:c.A1278G:p.Q426Q	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.646497632	2	0.9990317	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr13	96634855	12A2p6	cell line	sgMsh2	96634855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	456	0	0	NA	exonic	Cert1	nonsynonymous SNV	"Cert1:NM_001164222:exon15:c.T1541C:p.L514P,Cert1:NM_023420:exon16:c.T1619C:p.L540P"	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	1.33E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	97172972	12A2p6	cell line	sgMsh2	97172972	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	323	0	0	NA	exonic	Gfm2	nonsynonymous SNV	"Gfm2:NM_001271464:exon18:c.G1855T:p.A619S,Gfm2:NM_001146043:exon19:c.G1936T:p.A646S,Gfm2:NM_001271463:exon19:c.G1936T:p.A646S,Gfm2:NM_001271465:exon19:c.G1930T:p.A644S,Gfm2:NM_177266:exon19:c.G1936T:p.A646S"	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.774911545	2	0.7634696	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	97961393	12A2p6	cell line	sgMsh2	97961393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	115	0	0	NA	exonic	Arhgef28	synonymous SNV	Arhgef28:NM_012026:exon22:c.C2712T:p.F904F	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.9989138	AGA	synonymous	GAA	10	GAAGAAGAAG	NA
M3_p20	chr13	99434640	12A2p6	cell line	sgMsh2	99434640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	90	0	0	NA	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.G1572A:p.Q524Q	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996239	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr13	100055207	12A2p6	cell line	sgMsh2	100055207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	210	0	0	NA	exonic	Bdp1	synonymous SNV	Bdp1:NM_001081061:exon21:c.T4263C:p.N1421N	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9980257	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr13	100061007	12A2p6	cell line	sgMsh2	100061007	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	160	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A2869T:p.I957F	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999968	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	100425786	12A2p6	cell line	sgMsh2	100425786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	195	0	0	NA	exonic	Naip1	nonsynonymous SNV	Naip1:NM_008670:exon11:c.T2870C:p.M957T	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	100489157	12A2p6	cell line	sgMsh2	100489157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	185	0	0	NA	exonic	Gtf2h2	synonymous SNV	"Gtf2h2:NM_001360706:exon4:c.T150C:p.H50H,Gtf2h2:NM_022011:exon4:c.T150C:p.H50H"	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9974653	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr13	100600570	12A2p6	cell line	sgMsh2	100600570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	251	0	0	NA	exonic	Marveld2	nonsynonymous SNV	"Marveld2:NM_178410:exon4:c.A554G:p.Q185R,Marveld2:NM_001038602:exon5:c.A1385G:p.Q462R"	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999731	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	100803340	12A2p6	cell line	sgMsh2	100803340	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2237C:p.K746T	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999798	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	100803403	12A2p6	cell line	sgMsh2	100803403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	139	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.A2174C:p.E725A	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.712918622	2	0.9205599	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	100811369	12A2p6	cell line	sgMsh2	100811369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	118	0	0	NA	exonic	Slc30a5	frameshift deletion	Slc30a5:NM_022885:exon12:c.1500delT:p.F500Lfs*9	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.730630886	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr13	102735820	12A2p6	cell line	sgMsh2	102735820	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	148	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.T7039G:p.C2347G	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9976027	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	104205535	12A2p6	cell line	sgMsh2	104205535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	459	0	0	NA	exonic	Ppwd1	nonsynonymous SNV	Ppwd1:NM_172807:exon11:c.A1910G:p.D637G	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9996757	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	105109575	12A2p6	cell line	sgMsh2	105109575	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	183	0	0	NA	exonic	Nt5el	nonsynonymous SNV	Nt5el:NM_025751:exon3:c.G643A:p.A215T	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9965021	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	105444648	12A2p6	cell line	sgMsh2	105444648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.T395C:p.L132P	13qD1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	0.999996	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr13	107743537	12A2p6	cell line	sgMsh2	107743537	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	287	0	0	NA	exonic	Zswim6	frameshift deletion	Zswim6:NM_145456:exon11:c.1809delA:p.E604Sfs*6	13qD2.1	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	0.890041261	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr13	117902812	12A2p6	cell line	sgMsh2	117902812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	443	0	0	NA	exonic	Hcn1	synonymous SNV	Hcn1:NM_010408:exon5:c.T1263C:p.H421H	13qD2.3	chr13-3556297-119495179	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr14	14355034	12A2p6	cell line	sgMsh2	14355034	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.285	32	0	0	NA	exonic	Il3ra	synonymous SNV	Il3ra:NM_008369:exon11:c.A1095C:p.P365P	14qA1	chr14-7548571-19566630	3	2	1	0.91	4.029540036	NA	1	1	1	0.9809473	CAC	synonymous	CCCA	8	CCCACCCA	NA
M3_p20	chr14	14937751	12A2p6	cell line	sgMsh2	14937751	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	87	0	0	NA	exonic	Nek10	synonymous SNV	Nek10:NM_001195229:exon25:c.T2469G:p.A823A	14qA1	chr14-7548571-19566630	3	2	1	0.91	4.029540036	NA	1	0.597788906	2	0.9865417	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr14	16418484	12A2p6	cell line	sgMsh2	16418484	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	78	0	0	NA	exonic	Top2b	nonsynonymous SNV	Top2b:NM_009409:exon28:c.A3703T:p.T1235S	14qA2	chr14-7548571-19566630	3	2	1	0.91	4.029540036	NA	1	1	1	0.9991499	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	20409302	12A2p6	cell line	sgMsh2	20409302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	241	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon17:c.A1942G:p.S648G,Cfap70:NM_001163639:exon17:c.A1978G:p.S660G,Cfap70:NM_029698:exon18:c.A2110G:p.S704G"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	1.41E-08	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	20586018	12A2p6	cell line	sgMsh2	20586018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	151	0	0	NA	exonic	Usp54	synonymous SNV	Usp54:NM_030180:exon9:c.T957C:p.D319D	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999941	CAT	synonymous	CAT	8	CATCATCA	NA
M3_p20	chr14	20729830	12A2p6	cell line	sgMsh2	20729830	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	249	0	0	NA	exonic	Ndst2	nonsynonymous SNV	Ndst2:NM_010811:exon3:c.G341T:p.S114I	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.29668042	3	1.78E-08	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	21664671	12A2p6	cell line	sgMsh2	21664671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	55	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon16:c.A2672G:p.Q891R,Kat6b:NM_017479:exon16:c.A2672G:p.Q891R"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9959514	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	21668379	12A2p6	cell line	sgMsh2	21668379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	92	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon17:c.A2798G:p.N933S,Kat6b:NM_017479:exon17:c.A2798G:p.N933S"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996717	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	21837886	12A2p6	cell line	sgMsh2	21837886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	293	0	0	NA	exonic	Vdac2	nonsynonymous SNV	Vdac2:NM_011695:exon5:c.T296C:p.I99T	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	1.38E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	70	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	50	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9943212	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	25643671	12A2p6	cell line	sgMsh2	25643671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	144	0	0	NA	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon8:c.A539G:p.Q180R,Zmiz1:NM_183208:exon8:c.A539G:p.Q180R"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.845760601	1	0.9811126	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	26422496	12A2p6	cell line	sgMsh2	26422496	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	220	0	0	NA	exonic	Slmap	nonsynonymous SNV	"Slmap:NM_001347494:exon18:c.A2070C:p.Q690H,Slmap:NM_032008:exon20:c.A2172C:p.Q724H,Slmap:NM_001310445:exon21:c.A2235C:p.Q745H"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	27472387	12A2p6	cell line	sgMsh2	27472387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	129	0	0	NA	exonic	Tasor	synonymous SNV	"Tasor:NM_001114879:exon18:c.T3543C:p.D1181D,Tasor:NM_028945:exon18:c.T3543C:p.D1181D"	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999735	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr14	28317261	12A2p6	cell line	sgMsh2	28317261	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	47	0	0	NA	exonic	Erc2	nonsynonymous SNV	Erc2:NM_001347497:exon19:c.G2920A:p.G974S	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9930451	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	29396497	12A2p6	cell line	sgMsh2	29396497	G	-	Deletion	Mutect2;Vardict	2	0.081	133	0	0	NA	exonic	Cacna2d3	frameshift deletion	Cacna2d3:NM_009785:exon5:c.468delC:p.N157Mfs*8	14qA3	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.358673344	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	78	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3_p20	chr14	30602720	12A2p6	cell line	sgMsh2	30602720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	63	0	0	NA	exonic	Prkcd	synonymous SNV	Prkcd:NM_001310682:exon9:c.T996C:p.H332H	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9976461	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9990902	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	204	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	31163844	12A2p6	cell line	sgMsh2	31163844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	93	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon2:c.T172C:p.W58R	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996933	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	147	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999922	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr14	32177268	12A2p6	cell line	sgMsh2	32177268	T	C	SNV	Mutect2;MuSe;Vardict	3	0.077	306	0	0	NA	exonic	Ncoa4	synonymous SNV	"Ncoa4:NM_001033988:exon9:c.T1767C:p.R589R,Ncoa4:NM_001284319:exon9:c.T1482C:p.R494R,Ncoa4:NM_019744:exon9:c.T1767C:p.R589R"	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.34096108	3	0.9999997	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr14	32661078	12A2p6	cell line	sgMsh2	32661078	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	85	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.G2929T:p.G977W	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9994717	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	35323401	12A2p6	cell line	sgMsh2	35323401	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	146	0	0	NA	exonic	Grid1	synonymous SNV	Grid1:NM_008166:exon8:c.C1200A:p.T400T	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	0.371957542	3	0.9797432	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	168	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999981	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	77	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-41183403	3	2	1	0.91	4.029540036	NA	1	1	1	0.9990902	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	44001982	12A2p6	cell line	sgMsh2	44001982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	179	0	0	NA	exonic	Ang6	nonsynonymous SNV	Ang6:NM_001011876:exon2:c.A288G:p.I96M	14qC1	chr14-41348326-44504568	5.22592793	4.22592793	1	0.91	4.029540036	NA	2	1	1	0.9999991	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	44989291	12A2p6	cell line	sgMsh2	44989291	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	142	0	0	NA	exonic	Ptger2	synonymous SNV	Ptger2:NM_008964:exon1:c.G327T:p.A109A	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.999989	CGT	synonymous	NA	NA	NA	NA
M3_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	68	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9983234	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Strelka2;Vardict	2	0.2308	39	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M3_p20	chr14	50034559	12A2p6	cell line	sgMsh2	50034559	A	G	SNV	Mutect2;MuSe;Vardict	3	0.09	225	0	0	NA	exonic	Olfr725	synonymous SNV	Olfr725:NM_146317:exon1:c.T843C:p.I281I	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.398525938	3	0.9718988	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr14	50034672	12A2p6	cell line	sgMsh2	50034672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	328	0	0	NA	exonic	Olfr725	nonsynonymous SNV	Olfr725:NM_146317:exon1:c.A730G:p.I244V	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	1.04E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	50084401	12A2p6	cell line	sgMsh2	50084401	A	T	SNV	Mutect2;MuSe;Vardict	3	0.097	286	0	0	NA	exonic	Olfr726	synonymous SNV	Olfr726:NM_146316:exon1:c.T279A:p.S93S	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.429522399	3	0.5215626	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr14	50127283	12A2p6	cell line	sgMsh2	50127283	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.249	540	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.G705T:p.K235N	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	50281451	12A2p6	cell line	sgMsh2	50281451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	164	0	0	NA	exonic	Olfr732	synonymous SNV	Olfr732:NM_146665:exon1:c.T801C:p.A267A	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9999975	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr14	50360858	12A2p6	cell line	sgMsh2	50360858	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	183	0	0	NA	exonic	Tlr11	synonymous SNV	Tlr11:NM_205819:exon2:c.G300A:p.L100L	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9999993	TGC	synonymous	NA	NA	NA	NA
M3_p20	chr14	50486172	12A2p6	cell line	sgMsh2	50486172	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.343	341	0	0	NA	exonic	Olfr741	frameshift deletion	Olfr741:NM_207133:exon3:c.713delA:p.K240Rfs*11	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	55	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9959514	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	50681279	12A2p6	cell line	sgMsh2	50681279	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	321	0	0	NA	exonic	Olfr747	synonymous SNV	Olfr747:NM_207156:exon1:c.T354A:p.A118A	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	1.06E-09	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr14	50843777	12A2p6	cell line	sgMsh2	50843777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	74	0	0	NA	exonic	Tep1	nonsynonymous SNV	Tep1:NM_009351:exon27:c.A4003G:p.R1335G	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9988845	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	101	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.999822	CGT	synonymous	NA	NA	NA	NA
M3_p20	chr14	51130482	12A2p6	cell line	sgMsh2	51130482	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	216	0	0	NA	exonic	Rnase6	synonymous SNV	"Rnase6:NM_030098:exon2:c.T330G:p.T110T,Rnase6:NM_001360117:exon3:c.T330G:p.T110T"	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr14	51162526	12A2p6	cell line	sgMsh2	51162526	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	317	0	0	NA	exonic	Rnase2b	synonymous SNV	Rnase2b:NM_019398:exon1:c.G63A:p.T21T	14qC1	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.141698111	3	1	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	112	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.354245278	3	0.9759253	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	168	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	1	1	0.9999981	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M3_p20	chr14	52463354	12A2p6	cell line	sgMsh2	52463354	T	C	SNV	Mutect2;Vardict	2	0.052	393	0	0	NA	exonic	Olfr1508	synonymous SNV	Olfr1508:NM_020513:exon2:c.A654G:p.V218V	14qC2	chr14-44505690-53079320	3.2252983	3.2252983	0	0.91	4.029540036	NA	1	0.230259431	3	1	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr14	54242847	12A2p6	cell line	sgMsh2	54242847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	60	0	0	NA	exonic	Dad1	nonsynonymous SNV	"Dad1:NM_001113358:exon2:c.A233C:p.N78T,Dad1:NM_010015:exon2:c.A233C:p.N78T"	14qC2	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9971149	GTT	nonsynonymous	G	5	GGGGG	NA
M3_p20	chr14	55234740	12A2p6	cell line	sgMsh2	55234740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	105	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.G87A:p.A29A	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998644	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr14	55718447	12A2p6	cell line	sgMsh2	55718447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	118	0	0	NA	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.A1352G:p.K451R,Rabggta:NM_001360387:exon14:c.A1352G:p.K451R,Rabggta:NM_001360388:exon14:c.A1352G:p.K451R"	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.999944	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	40	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9888524	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	35	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9844086	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr14	55769194	12A2p6	cell line	sgMsh2	55769194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	108	0	0	NA	exonic	Adcy4	nonsynonymous SNV	"Adcy4:NM_001361604:exon26:c.A3181G:p.T1061A,Adcy4:NM_080435:exon26:c.A3181G:p.T1061A"	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998894	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	56503935	12A2p6	cell line	sgMsh2	56503935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	264	0	0	NA	exonic	Rnf17	synonymous SNV	Rnf17:NM_001033043:exon28:c.T3846C:p.H1282H	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	3.73E-09	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr14	56620490	12A2p6	cell line	sgMsh2	56620490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	102	0	0	NA	exonic	Parp4	nonsynonymous SNV	Parp4:NM_001145978:exon22:c.G2578A:p.V860I	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998337	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	183	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.336533014	3	0.9998461	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	56771844	12A2p6	cell line	sgMsh2	56771844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	261	0	0	NA	exonic	Pspc1	nonsynonymous SNV	Pspc1:NM_025682:exon2:c.T532G:p.F178V	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	4.35E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	57597081	12A2p6	cell line	sgMsh2	57597081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	78	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.T2041C:p.Y681H,Xpo4:NM_001368697:exon16:c.T1819C:p.Y607H"	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9991499	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.366	232	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr14	60300445	12A2p6	cell line	sgMsh2	60300445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	98	0	0	NA	exonic	Mtmr6	nonsynonymous SNV	Mtmr6:NM_144843:exon14:c.A1778C:p.D593A	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997817	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	60692191	12A2p6	cell line	sgMsh2	60692191	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	97	0	0	NA	exonic	Spata13	synonymous SNV	Spata13:NM_001033272:exon2:c.C1197A:p.P399P	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997663	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr14	61213807	12A2p6	cell line	sgMsh2	61213807	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	108	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.G13301T:p.R4434M	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.438378531	2	0.8076808	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	62364044	12A2p6	cell line	sgMsh2	62364044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	310	0	0	NA	exonic	Rnaseh2b	nonsynonymous SNV	Rnaseh2b:NM_026001:exon8:c.T622C:p.Y208H	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	1.12E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	62414291	12A2p6	cell line	sgMsh2	62414291	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	91	0	0	NA	exonic	Gucy1b2	synonymous SNV	"Gucy1b2:NM_001204340:exon10:c.A1210C:p.R404R,Gucy1b2:NM_172810:exon10:c.A1255C:p.R419R"	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	2	1	1	0.9996486	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr14	62708908	12A2p6	cell line	sgMsh2	62708908	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	249	0	0	NA	exonic	Ints6	nonsynonymous SNV	Ints6:NM_008715:exon9:c.T1163C:p.V388A	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	0.265683958	3	1.25E-09	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	63000947	12A2p6	cell line	sgMsh2	63000947	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	207	0	0	NA	exonic	Defb47	nonsynonymous SNV	Defb47:NM_001039125:exon2:c.C121A:p.L41I	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	63973377	12A2p6	cell line	sgMsh2	63973377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	135	0	0	NA	exonic	4930578I06Rik	nonsynonymous SNV	4930578I06Rik:NM_026359:exon3:c.A401G:p.E134G	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999824	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	68571494	12A2p6	cell line	sgMsh2	68571494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	65	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon9:c.A764G:p.Y255C	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9979448	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.382	103	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998446	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	70195930	12A2p6	cell line	sgMsh2	70195930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	175	0	0	NA	exonic	Sorbs3	synonymous SNV	"Sorbs3:NM_001271407:exon6:c.A498G:p.P166P,Sorbs3:NM_001271408:exon6:c.A498G:p.P166P,Sorbs3:NM_011366:exon6:c.A657G:p.P219P"	14qD2	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999988	GTG	synonymous	TGGG	9	TGGGTGGGT	NA
M3_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	75	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9989577	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	73365826	12A2p6	cell line	sgMsh2	73365826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	110	0	0	NA	exonic	Itm2b	nonsynonymous SNV	Itm2b:NM_008410:exon4:c.T490C:p.C164R	14qD3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	75036060	12A2p6	cell line	sgMsh2	75036060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	93	0	0	NA	exonic	Rubcnl	synonymous SNV	"Rubcnl:NM_001374214:exon3:c.T75C:p.N25N,Rubcnl:NM_198642:exon4:c.T711C:p.N237N"	14qD3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	2	1	1	0.9996933	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr14	75323341	12A2p6	cell line	sgMsh2	75323341	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	43	0	0	NA	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon10:c.G1370A:p.R457H,Zc3h13:NM_026083:exon10:c.G1370A:p.R457H"	14qD3	chr14-53336808-75777336	3	2	1	0.91	4.029540036	NA	2	1	1	0.9908908	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	76506610	12A2p6	cell line	sgMsh2	76506610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	11	0	0	NA	exonic	Tsc22d1	nonsynonymous SNV	"Tsc22d1:NM_001177751:exon3:c.A260G:p.Q87R,Tsc22d1:NM_001310647:exon3:c.A197G:p.Q66R,Tsc22d1:NM_009366:exon3:c.A368G:p.Q123R,Tsc22d1:NM_207652:exon3:c.A3170G:p.Q1057R,Tsc22d1:NM_001310646:exon5:c.A2924G:p.Q975R"	14qD3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	2	1	1	0.9245435	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	78086735	12A2p6	cell line	sgMsh2	78086735	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	88	0	0	NA	exonic	Fam216b	nonsynonymous SNV	Fam216b:NM_177629:exon2:c.A1G:p.M1V	14qD3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995692	ATT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr14	79062635	12A2p6	cell line	sgMsh2	79062635	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	157	0	0	NA	exonic	Vwa8	synonymous SNV	"Vwa8:NM_027906:exon25:c.T2907A:p.I969I,Vwa8:NM_173758:exon25:c.T2907A:p.I969I"	14qD3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	TTA	synonymous	NA	NA	NA	NA
M3_p20	chr14	79610248	12A2p6	cell line	sgMsh2	79610248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	129	0	0	NA	exonic	Sugt1	synonymous SNV	Sugt1:NM_026474:exon10:c.T537C:p.A179A	14qD3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	0.965318382	1	0.9998772	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr14	84448068	12A2p6	cell line	sgMsh2	84448068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	138	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G1974T:p.E658D	14qD3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999856	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	86965554	12A2p6	cell line	sgMsh2	86965554	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	163	0	0	NA	exonic	Diaph3	synonymous SNV	Diaph3:NM_019670:exon17:c.C1899A:p.I633I	14qE1	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999974	CGA	synonymous	NA	NA	NA	NA
M3_p20	chr14	99088770	12A2p6	cell line	sgMsh2	99088770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	161	0	0	NA	exonic	Dis3	nonsynonymous SNV	"Dis3:NM_001360051:exon9:c.A811G:p.T271A,Dis3:NM_028315:exon9:c.A1378G:p.T460A,Dis3:NM_001360050:exon10:c.A1096G:p.T366A"	14qE2.2	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.999997	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	103123316	12A2p6	cell line	sgMsh2	103123316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	70	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon80:c.T13529C:p.I4510T	14qE2.3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9985363	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	103285363	12A2p6	cell line	sgMsh2	103285363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon14:c.T2063C:p.M688T	14qE2.3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996717	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	104478934	12A2p6	cell line	sgMsh2	104478934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	80	0	0	NA	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T2002C:p.L668L	14qE2.3	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9992579	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr14	115370033	12A2p6	cell line	sgMsh2	115370033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	153	0	0	NA	exonic	Gpc5	nonsynonymous SNV	Gpc5:NM_175500:exon3:c.A827G:p.N276S	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999948	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	118043133	12A2p6	cell line	sgMsh2	118043133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	89	0	0	NA	exonic	Dct	nonsynonymous SNV	Dct:NM_010024:exon2:c.T470C:p.V157A	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995975	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	118654311	12A2p6	cell line	sgMsh2	118654311	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.26	29	0	0	NA	exonic	Abcc4	nonsynonymous SNV	"Abcc4:NM_001033336:exon4:c.G370A:p.D124N,Abcc4:NM_001163675:exon4:c.G241A:p.D81N"	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9767356	TCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	227	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	3.49E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.251	49	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.9939241	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	119139009	12A2p6	cell line	sgMsh2	119139009	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.222	40	0	0	NA	exonic	Hs6st3	nonsynonymous SNV	Hs6st3:NM_015820:exon1:c.T595C:p.F199L	14qE4	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	0.983030646	1	0.9859757	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	271	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	2.70E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	122891529	12A2p6	cell line	sgMsh2	122891529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	157	0	0	NA	exonic	Ggact	synonymous SNV	Ggact:NM_145466:exon3:c.A273G:p.T91T	14qE5	chr14-75846538-123291781	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr14	123507512	12A2p6	cell line	sgMsh2	123507512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	169	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon10:c.A1103G:p.K368R	14qE5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	169	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	364	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	3320438	12A2p6	cell line	sgMsh2	3320438	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	353	0	0	NA	exonic	Ghr	synonymous SNV	"Ghr:NM_001286370:exon11:c.C1257T:p.T419T,Ghr:NM_010284:exon11:c.C1257T:p.T419T"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.72620282	2	0.9993472	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.615	235	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	2.06E-08	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M3_p20	chr15	3991830	12A2p6	cell line	sgMsh2	3991830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	139	0	0	NA	exonic	AW549877	nonsynonymous SNV	AW549877:NM_145930:exon3:c.A242C:p.K81T	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.429522399	2	8.17E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	4759828	12A2p6	cell line	sgMsh2	4759828	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	81	0	0	NA	exonic	C6	nonsynonymous SNV	C6:NM_016704:exon7:c.A754G:p.T252A	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9993067	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.575	148	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999927	ATG	synonymous	A	5	AAAAA	NA
M3_p20	chr15	4938378	12A2p6	cell line	sgMsh2	4938378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.536	228	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon29:c.A2898T:p.L966L	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	3.26E-08	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr15	4949063	12A2p6	cell line	sgMsh2	4949063	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	143	0	0	NA	exonic	Mroh2b	nonsynonymous SNV	Mroh2b:NM_001166066:exon37:c.G4090T:p.A1364S	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999898	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	5034235	12A2p6	cell line	sgMsh2	5034235	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	275	0	0	NA	exonic	C7	nonsynonymous SNV	C7:NM_001243837:exon7:c.G683A:p.R228Q	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	2.29E-09	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	6786507	12A2p6	cell line	sgMsh2	6786507	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	100	0	0	NA	exonic	Rictor	frameshift deletion	Rictor:NM_030168:exon31:c.3259delT:p.F1088Lfs*6	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.890041261	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr15	6790600	12A2p6	cell line	sgMsh2	6790600	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	438	0	0	NA	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon33:c.A4372C:p.R1458R	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.664209896	2	7.68E-09	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr15	7247153	12A2p6	cell line	sgMsh2	7247153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.615	36	0	0	NA	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon12:c.T1531C:p.Y511H,Egflam:NM_001289498:exon12:c.T1081C:p.Y361H,Egflam:NM_178748:exon12:c.T1531C:p.Y511H"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9854186	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	8154993	12A2p6	cell line	sgMsh2	8154993	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	264	0	0	NA	exonic	Nup155	stopgain	Nup155:NM_133227:exon33:c.G3871T:p.E1291X	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.628785368	2	0.999999	TGA	nonsynonymous	ATGA	9	ATGAATGAA	NA
M3_p20	chr15	8186626	12A2p6	cell line	sgMsh2	8186626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	295	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon12:c.A1499G:p.K500R	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.642069566	2	0.9999994	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	8359104	12A2p6	cell line	sgMsh2	8359104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.585	356	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon9:c.T1031C:p.M344T,Nipbl:NM_201232:exon9:c.T1031C:p.M344T"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	1.01E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	9335781	12A2p6	cell line	sgMsh2	9335781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	329	0	0	NA	exonic	Ugt3a2	synonymous SNV	Ugt3a2:NM_144845:exon1:c.T87C:p.S29S	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.95646225	1	5.45E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr15	10371626	12A2p6	cell line	sgMsh2	10371626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	161	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon2:c.A113G:p.K38R,Agxt2:NM_001310735:exon2:c.A113G:p.K38R,Agxt2:NM_001310736:exon2:c.A110G:p.K37R"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.999997	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	10388850	12A2p6	cell line	sgMsh2	10388850	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	359	0	0	NA	exonic	Agxt2	stopgain	"Agxt2:NM_001031851:exon9:c.C1012T:p.R338X,Agxt2:NM_001310735:exon9:c.C928T:p.R310X,Agxt2:NM_001310736:exon9:c.C925T:p.R309X"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.770483479	2	0.8853014	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	10960681	12A2p6	cell line	sgMsh2	10960681	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	133	0	0	NA	exonic	C1qtnf3	nonsynonymous SNV	"C1qtnf3:NM_001204134:exon3:c.G469A:p.G157S,C1qtnf3:NM_030888:exon3:c.G250A:p.G84S"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.633213434	2	0.9972646	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	11215691	12A2p6	cell line	sgMsh2	11215691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.614	290	0	0	NA	exonic	Adamts12	nonsynonymous SNV	Adamts12:NM_175501:exon4:c.A797G:p.H266R	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	1.47E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	173	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.907753525	1	0.9996853	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	12375226	12A2p6	cell line	sgMsh2	12375226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	33	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A4822G:p.T1608A	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9821776	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	12837294	12A2p6	cell line	sgMsh2	12837295	GA	-	Deletion	Strelka2;Vardict	2	0.1963	107	0	0	NA	exonic	Drosha	frameshift deletion	"Drosha:NM_001130149:exon5:c.863_864del:p.R290Tfs*20,Drosha:NM_026799:exon5:c.863_864del:p.R290Tfs*20"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.869229351	NA	NA	CGA	frameshift	GA	8	GAGAGAGA	-2
M3_p20	chr15	12842449	12A2p6	cell line	sgMsh2	12842449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	121	0	0	NA	exonic	Drosha	nonsynonymous SNV	"Drosha:NM_001130149:exon7:c.A1205G:p.E402G,Drosha:NM_026799:exon7:c.A1205G:p.E402G"	15qA1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999543	GAG	nonsynonymous	GGA	15	GGAGGAGGAGGAGGA	NA
M3_p20	chr15	25964273	12A2p6	cell line	sgMsh2	25964273	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	277	0	0	NA	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T85A:p.C29S,Retreg1:NM_001277316:exon2:c.T109A:p.C37S,Retreg1:NM_001277317:exon2:c.T55A:p.C19S,Retreg1:NM_025459:exon3:c.T85A:p.C29S,Retreg1:NM_001034851:exon4:c.T457A:p.C153S"	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	2.13E-09	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	26552827	12A2p6	cell line	sgMsh2	26552827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	59	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.C353T:p.P118L	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9969126	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	26552887	12A2p6	cell line	sgMsh2	26552887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	0	0	NA	exonic	Fbxl7	nonsynonymous SNV	Fbxl7:NM_176959:exon3:c.A293G:p.H98R	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9939241	GTG	nonsynonymous	GTGA	16	TGAGTGGGTGAGTGAG	NA
M3_p20	chr15	28346829	12A2p6	cell line	sgMsh2	28346829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	102	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon45:c.T7457C:p.M2486T	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9998337	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	28411584	12A2p6	cell line	sgMsh2	28411584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	92	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.T11098C:p.Y3700H	15qB1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.974174514	1	0.9992596	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	30847265	12A2p6	cell line	sgMsh2	30847265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	172	0	0	NA	exonic	Ctnnd2	synonymous SNV	"Ctnnd2:NM_001355502:exon12:c.A2001G:p.K667K,Ctnnd2:NM_008729:exon12:c.A2001G:p.K667K"	15qB2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.774911545	1	0.5501523	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	347	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.921037723	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M3_p20	chr15	35793877	12A2p6	cell line	sgMsh2	35793877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	118	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon38:c.A6698G:p.H2233R	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.999944	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	36234870	12A2p6	cell line	sgMsh2	36234870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	304	0	0	NA	exonic	Spag1	nonsynonymous SNV	"Spag1:NM_001359980:exon19:c.A2678C:p.Q893P,Spag1:NM_001359984:exon19:c.A2714C:p.Q905P,Spag1:NM_012031:exon19:c.A2678C:p.Q893P,Spag1:NM_001359982:exon20:c.A2714C:p.Q905P,Spag1:NM_001359981:exon21:c.A2714C:p.Q905P,Spag1:NM_001359983:exon21:c.A1979C:p.Q660P"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	1.18E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	36507718	12A2p6	cell line	sgMsh2	36507718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	176	0	0	NA	exonic	Snx31	nonsynonymous SNV	"Snx31:NM_001347022:exon13:c.A1208G:p.H403R,Snx31:NM_025712:exon13:c.A1208G:p.H403R"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.602216972	2	0.9999644	GTG	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr15	38022377	12A2p6	cell line	sgMsh2	38022377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	322	0	0	NA	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon15:c.T1882C:p.S628P,Ubr5:NM_001112721:exon15:c.T1864C:p.S622P"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.686350226	2	0.9999821	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	38024902	12A2p6	cell line	sgMsh2	38024902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	212	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon14:c.T1629C:p.H543H,Ubr5:NM_001112721:exon14:c.T1611C:p.H537H"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr15	39437851	12A2p6	cell line	sgMsh2	39437851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	141	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon4:c.A1553G:p.E518G,Rims2:NM_001256383:exon4:c.A1553G:p.E518G,Rims2:NM_053271:exon6:c.A1673G:p.E558G"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.863472865	1	0.9915075	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
M3_p20	chr15	39511363	12A2p6	cell line	sgMsh2	39511363	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	272	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256382:exon16:c.A3120T:p.S1040S,Rims2:NM_001256383:exon16:c.A3120T:p.S1040S,Rims2:NM_053271:exon18:c.A3240T:p.S1080S"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999993	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr15	39534928	12A2p6	cell line	sgMsh2	39534928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	311	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256383:exon17:c.A3222G:p.R1074R,Rims2:NM_001256382:exon18:c.A3288G:p.R1096R"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.845760601	1	0.9984747	GAT	synonymous	NA	NA	NA	NA
M3_p20	chr15	39679291	12A2p6	cell line	sgMsh2	39679291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	179	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon3:c.A328G:p.S110G,Rims2:NM_001256383:exon23:c.A4123G:p.S1375G,Rims2:NM_001256382:exon24:c.A4189G:p.S1397G,Rims2:NM_053271:exon24:c.A4063G:p.S1355G"	15qB3.1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.832476403	1	0.975079	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	44396537	12A2p6	cell line	sgMsh2	44396537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	314	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon7:c.T1141C:p.L381L,Nudcd1:NM_026149:exon7:c.T1144C:p.L382L"	15qB3.2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.797051875	1	0.7843394	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr15	44405825	12A2p6	cell line	sgMsh2	44405825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.638	158	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.T438C:p.S146S,Nudcd1:NM_026149:exon3:c.T438C:p.S146S"	15qB3.2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999963	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr15	44546608	12A2p6	cell line	sgMsh2	44546608	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	293	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.A7510G:p.I2504V	15qB3.2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.885613195	1	0.9999632	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47659065	12A2p6	cell line	sgMsh2	47659065	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	385	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon52:c.C8207T:p.S2736F	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.664209896	2	0.9999999	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47660150	12A2p6	cell line	sgMsh2	47660150	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	354	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon51:c.C8059T:p.P2687S	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.823620271	1	0.9884794	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	197	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47704155	12A2p6	cell line	sgMsh2	47704155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	389	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.A6611T:p.D2204V	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.774911545	2	0.8547002	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47881537	12A2p6	cell line	sgMsh2	47881537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	109	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4373C:p.L1458P	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.61550117	2	0.9943807	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47881541	12A2p6	cell line	sgMsh2	47881541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	104	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon27:c.T4369C:p.F1457L	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.650925698	2	0.9733179	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	47949999	12A2p6	cell line	sgMsh2	47949999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	290	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon21:c.T3448C:p.Y1150H	15qB3.3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	1.47E-09	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	50660843	12A2p6	cell line	sgMsh2	50660843	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	343	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon6:c.T3690A:p.D1230E,Trps1:NM_032000:exon6:c.T3678A:p.D1226E,Trps1:NM_001310485:exon8:c.T3123A:p.D1041E"	15qC	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.983030646	1	1.09E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	50846765	12A2p6	cell line	sgMsh2	50846765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	393	0	0	NA	exonic	Trps1	nonsynonymous SNV	"Trps1:NM_001310481:exon2:c.A188G:p.E63G,Trps1:NM_001310485:exon2:c.A188G:p.E63G,Trps1:NM_032000:exon2:c.A176G:p.E59G"	15qC	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.761627348	2	0.9733102	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	294	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.801479941	1	0.8541123	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	57259163	12A2p6	cell line	sgMsh2	57259163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.655	92	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon3:c.T417C:p.D139D,Slc22a22:NM_172378:exon4:c.T417C:p.D139D"	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9996717	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr15	58926473	12A2p6	cell line	sgMsh2	58926473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	288	0	0	NA	exonic	Tatdn1	nonsynonymous SNV	"Tatdn1:NM_001368428:exon3:c.A101G:p.D34G,Tatdn1:NM_001368634:exon3:c.A101G:p.D34G,Tatdn1:NM_175151:exon3:c.A101G:p.D34G"	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.68192216	2	0.9999558	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	60917930	12A2p6	cell line	sgMsh2	60917930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	96	0	0	NA	exonic	A1bg	nonsynonymous SNV	A1bg:NM_001081067:exon7:c.T1468C:p.Y490H	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9997499	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	65857540	12A2p6	cell line	sgMsh2	65857540	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	132	0	0	NA	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon18:c.A1900C:p.S634R,Efr3a:NM_133766:exon18:c.A2008C:p.S670R"	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.97860258	1	0.9999431	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	66002297	12A2p6	cell line	sgMsh2	66002297	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	248	0	0	NA	exonic	Kcnq3	frameshift deletion	Kcnq3:NM_152923:exon12:c.1601delA:p.K534Sfs*5	15qD1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr15	66469846	12A2p6	cell line	sgMsh2	66469846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.58	316	0	0	NA	exonic	Lrrc6	nonsynonymous SNV	Lrrc6:NM_019457:exon4:c.T400C:p.F134L	15qD2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	1.08E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	66615299	12A2p6	cell line	sgMsh2	66615299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.617	233	0	0	NA	exonic	Phf20l1	synonymous SNV	Phf20l1:NM_001081409:exon11:c.A1260G:p.L420L	15qD2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	2.35E-08	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr15	66734572	12A2p6	cell line	sgMsh2	66734572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	313	0	0	NA	exonic	Tg	synonymous SNV	Tg:NM_009375:exon28:c.T5421C:p.T1807T	15qD2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.859044799	1	0.9996434	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr15	71462350	12A2p6	cell line	sgMsh2	71462350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	208	0	0	NA	exonic	Fam135b	synonymous SNV	Fam135b:NM_177819:exon13:c.A2994G:p.Q998Q	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr15	73522340	12A2p6	cell line	sgMsh2	73522340	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.529	24	0	0	NA	exonic	Dennd3	synonymous SNV	Dennd3:NM_001081066:exon2:c.C213T:p.S71S	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9676163	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr15	74838917	12A2p6	cell line	sgMsh2	74838917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	77	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon4:c.A793C:p.I265L	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9990902	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	75839638	12A2p6	cell line	sgMsh2	75839638	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	173	0	0	NA	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon2:c.C973A:p.L325I	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.912181591	1	0.9997579	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76177742	12A2p6	cell line	sgMsh2	76177742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	245	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8147C:p.Y2716S,Plec:NM_201385:exon32:c.A8033C:p.Y2678S,Plec:NM_201386:exon32:c.A7994C:p.Y2665S,Plec:NM_201387:exon32:c.A7589C:p.Y2530S,Plec:NM_201388:exon32:c.A7589C:p.Y2530S,Plec:NM_201389:exon32:c.A8489C:p.Y2830S,Plec:NM_201390:exon32:c.A7964C:p.Y2655S,Plec:NM_201391:exon32:c.A8060C:p.Y2687S,Plec:NM_201392:exon32:c.A7589C:p.Y2530S,Plec:NM_201393:exon32:c.A8081C:p.Y2694S,Plec:NM_201394:exon32:c.A8060C:p.Y2687S,Plec:NM_001163540:exon33:c.A8504C:p.Y2835S,Plec:NM_001163549:exon33:c.A8075C:p.Y2692S,Plec:NM_001163542:exon34:c.A8198C:p.Y2733S,Plec:NM_001164203:exon34:c.A7589C:p.Y2530S"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.650925698	2	0.9999809	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76178977	12A2p6	cell line	sgMsh2	76178977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	59	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon31:c.A7045G:p.T2349A,Plec:NM_201385:exon31:c.A6931G:p.T2311A,Plec:NM_201386:exon31:c.A6892G:p.T2298A,Plec:NM_201387:exon31:c.A6487G:p.T2163A,Plec:NM_201388:exon31:c.A6487G:p.T2163A,Plec:NM_201389:exon31:c.A7387G:p.T2463A,Plec:NM_201390:exon31:c.A6862G:p.T2288A,Plec:NM_201391:exon31:c.A6958G:p.T2320A,Plec:NM_201392:exon31:c.A6487G:p.T2163A,Plec:NM_201393:exon31:c.A6979G:p.T2327A,Plec:NM_201394:exon31:c.A6958G:p.T2320A,Plec:NM_001163540:exon32:c.A7402G:p.T2468A,Plec:NM_001163549:exon32:c.A6973G:p.T2325A,Plec:NM_001163542:exon33:c.A7096G:p.T2366A,Plec:NM_001164203:exon33:c.A6487G:p.T2163A"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.890041261	1	0.9722215	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.276	49	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9939241	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.267	50	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9943212	AGA	synonymous	NA	NA	NA	NA
M3_p20	chr15	76185871	12A2p6	cell line	sgMsh2	76185871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	67	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon23:c.T2984A:p.L995Q,Plec:NM_201385:exon23:c.T2870A:p.L957Q,Plec:NM_201386:exon23:c.T2831A:p.L944Q,Plec:NM_201387:exon23:c.T2426A:p.L809Q,Plec:NM_201388:exon23:c.T2426A:p.L809Q,Plec:NM_201389:exon23:c.T3326A:p.L1109Q,Plec:NM_201390:exon23:c.T2801A:p.L934Q,Plec:NM_201391:exon23:c.T2897A:p.L966Q,Plec:NM_201392:exon23:c.T2426A:p.L809Q,Plec:NM_201393:exon23:c.T2918A:p.L973Q,Plec:NM_201394:exon23:c.T2897A:p.L966Q,Plec:NM_001163540:exon24:c.T3341A:p.L1114Q,Plec:NM_001163549:exon24:c.T2912A:p.L971Q,Plec:NM_001163542:exon25:c.T3035A:p.L1012Q,Plec:NM_001164203:exon25:c.T2426A:p.L809Q"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9982057	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76296687	12A2p6	cell line	sgMsh2	76296687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	214	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon27:c.T3815C:p.F1272S	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76298186	12A2p6	cell line	sgMsh2	76298186	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	175	0	0	NA	exonic	Oplah	nonsynonymous SNV	Oplah:NM_153122:exon21:c.A2968T:p.M990L	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.566792445	2	0.9999942	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76327562	12A2p6	cell line	sgMsh2	76327562	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.615	85	0	0	NA	exonic	Exosc4	stopgain	Exosc4:NM_175399:exon1:c.A70T:p.K24X	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9994717	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76451423	12A2p6	cell line	sgMsh2	76451423	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.673	76	0	0	NA	exonic	Mroh1	nonsynonymous SNV	Mroh1:NM_175457:exon39:c.T4265C:p.V1422A	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9990262	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76593618	12A2p6	cell line	sgMsh2	76593618	G	-	Deletion	Mutect2;Vardict	2	0.154	94	0	0	NA	exonic	Adck5	frameshift deletion	Adck5:NM_172960:exon5:c.530delG:p.G178Afs*46	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.68192216	NA	NA	CGG	frameshift	NA	NA	NA	-1
M3_p20	chr15	76613338	12A2p6	cell line	sgMsh2	76613338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	116	0	0	NA	exonic	Slc39a4	nonsynonymous SNV	Slc39a4:NM_028064:exon10:c.A1532G:p.Y511C	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999358	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76698012	12A2p6	cell line	sgMsh2	76698012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	96	0	0	NA	exonic	Gpt	nonsynonymous SNV	Gpt:NM_182805:exon5:c.G668T:p.R223L	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.712918622	2	0.7587727	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76718025	12A2p6	cell line	sgMsh2	76718025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	156	0	0	NA	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon5:c.C529A:p.L177I	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.513655653	2	0.9995873	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	202	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.828048337	1	0.9735263	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	76726668	12A2p6	cell line	sgMsh2	76726668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon8:c.T2735C:p.V912A,Arhgap39:NM_001168288:exon9:c.T2828C:p.V943A"	15qD3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9992058	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	328	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.646497632	2	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	78459882	12A2p6	cell line	sgMsh2	78459882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.611	51	0	0	NA	exonic	Tmprss6	nonsynonymous SNV	"Tmprss6:NM_001355601:exon5:c.T443C:p.I148T,Tmprss6:NM_027902:exon5:c.T479C:p.I160T"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9946926	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	78561912	12A2p6	cell line	sgMsh2	78561912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	43	0	0	NA	exonic	Rac2	nonsynonymous SNV	Rac2:NM_009008:exon6:c.T575C:p.L192P	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.788195743	1	0.8277692	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	78773060	12A2p6	cell line	sgMsh2	78773060	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	85	0	0	NA	exonic	Mfng	synonymous SNV	Mfng:NM_008595:exon1:c.G213A:p.L71L	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9994717	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	119	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999476	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr15	79317772	12A2p6	cell line	sgMsh2	79317772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	0	0	NA	exonic	Pla2g6	synonymous SNV	"Pla2g6:NM_001199023:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199024:exon2:c.G198A:p.Q66Q,Pla2g6:NM_016915:exon2:c.G198A:p.Q66Q,Pla2g6:NM_001199025:exon3:c.G198A:p.Q66Q"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.999796	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr15	80080908	12A2p6	cell line	sgMsh2	80080908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.612	220	0	0	NA	exonic	Rpl3	synonymous SNV	Rpl3:NM_013762:exon4:c.T489C:p.I163I	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999999	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr15	80355673	12A2p6	cell line	sgMsh2	80355673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	168	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon7:c.C922A:p.L308I	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.805908007	1	0.8830055	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	81671120	12A2p6	cell line	sgMsh2	81671120	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	175	0	0	NA	exonic	L3mbtl2	nonsynonymous SNV	"L3mbtl2:NM_001289711:exon5:c.G573T:p.K191N,L3mbtl2:NM_001289712:exon5:c.G573T:p.K191N,L3mbtl2:NM_145993:exon5:c.G573T:p.K191N"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999988	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	81910516	12A2p6	cell line	sgMsh2	81910516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	183	0	0	NA	exonic	Aco2	nonsynonymous SNV	Aco2:NM_080633:exon12:c.T1474C:p.S492P	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999993	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	81911900	12A2p6	cell line	sgMsh2	81911900	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	106	0	0	NA	exonic	Aco2	synonymous SNV	Aco2:NM_080633:exon13:c.G1497T:p.L499L	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.845760601	1	0.9668701	TGG	synonymous	NA	NA	NA	NA
M3_p20	chr15	83138335	12A2p6	cell line	sgMsh2	83138335	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	82	0	0	NA	exonic	Poldip3	nonsynonymous SNV	"Poldip3:NM_001347082:exon2:c.G247A:p.A83T,Poldip3:NM_178627:exon2:c.G247A:p.A83T"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.642069566	2	0.9376617	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	83160416	12A2p6	cell line	sgMsh2	83160416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	150	0	0	NA	exonic	Cyb5r3	nonsynonymous SNV	Cyb5r3:NM_029787:exon6:c.T469C:p.F157L	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.690778292	2	0.9805645	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	83614998	12A2p6	cell line	sgMsh2	83614998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	161	0	0	NA	exonic	Scube1	nonsynonymous SNV	"Scube1:NM_001271473:exon14:c.A1682G:p.D561G,Scube1:NM_022723:exon16:c.A1925G:p.D642G,Scube1:NM_001271472:exon17:c.A2015G:p.D672G"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.801479941	1	0.8540053	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	83852059	12A2p6	cell line	sgMsh2	83852059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	125	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon5:c.T652C:p.W218R,Mpped1:NM_001359132:exon5:c.T652C:p.W218R,Mpped1:NM_172610:exon5:c.T652C:p.W218R"	15qE1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999652	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	84105512	12A2p6	cell line	sgMsh2	84105512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.711	37	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T88C:p.F30L,Sult4a1:NM_013873:exon1:c.T88C:p.F30L"	15qE2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9863641	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	200	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.938749986	1	0.9999859	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	84699603	12A2p6	cell line	sgMsh2	84699603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	57	0	0	NA	exonic	Prr5	nonsynonymous SNV	"Prr5:NM_146061:exon6:c.T430C:p.S144P,Prr5:NM_001346662:exon7:c.T403C:p.S135P"	15qE2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9964644	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	85926240	12A2p6	cell line	sgMsh2	85926240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	142	0	0	NA	exonic	Celsr1	nonsynonymous SNV	Celsr1:NM_009886:exon18:c.T6446A:p.L2149Q	15qE2	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.823620271	1	0.944958	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	89424843	12A2p6	cell line	sgMsh2	89424843	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	188	0	0	NA	exonic	Cpt1b	nonsynonymous SNV	Cpt1b:NM_009948:exon3:c.G155T:p.R52M	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999995	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	89814244	12A2p6	cell line	sgMsh2	89814244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	89	0	0	NA	exonic	Syt10	nonsynonymous SNV	Syt10:NM_018803:exon3:c.T896C:p.L299P	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9995975	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	90956316	12A2p6	cell line	sgMsh2	90956316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	186	0	0	NA	exonic	Kif21a	stopgain	"Kif21a:NM_016705:exon25:c.T3596A:p.L1199X,Kif21a:NM_001109041:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109042:exon26:c.T3617A:p.L1206X,Kif21a:NM_001358050:exon26:c.T3617A:p.L1206X,Kif21a:NM_001109040:exon27:c.T3656A:p.L1219X"	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9999995	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	91796139	12A2p6	cell line	sgMsh2	91796139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	250	0	0	NA	exonic	Lrrk2	synonymous SNV	Lrrk2:NM_025730:exon42:c.T6252C:p.D2084D	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	8.08E-09	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr15	92243027	12A2p6	cell line	sgMsh2	92243027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.565	398	0	0	NA	exonic	Cntn1	synonymous SNV	"Cntn1:NM_001159647:exon7:c.C633T:p.C211C,Cntn1:NM_001159648:exon7:c.C633T:p.C211C,Cntn1:NM_007727:exon7:c.C633T:p.C211C,Cntn1:NM_001358051:exon9:c.C633T:p.C211C"	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	1.00E-09	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr15	92250886	12A2p6	cell line	sgMsh2	92250886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	318	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon10:c.A1013G:p.N338S,Cntn1:NM_001159648:exon10:c.A1013G:p.N338S,Cntn1:NM_007727:exon10:c.A1013G:p.N338S,Cntn1:NM_001358051:exon12:c.A1013G:p.N338S"	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	1.07E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	93512576	12A2p6	cell line	sgMsh2	93512576	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.147	88	0	0	NA	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon2:c.T6G:p.P2P,Prickle1:NM_001364846:exon2:c.T6G:p.P2P"	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.650925698	2	0.9411267	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr15	94540303	12A2p6	cell line	sgMsh2	94540303	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.452	83	0	0	NA	exonic	Pus7l	frameshift insertion	Pus7l:NM_172437:exon2:c.659dupT:p.K221Qfs*14	15qE3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
M3_p20	chr15	96414825	12A2p6	cell line	sgMsh2	96414825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	122	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon15:c.A4334G:p.K1445R	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.752771216	2	0.5668937	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	96997032	12A2p6	cell line	sgMsh2	96997032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	225	0	0	NA	exonic	Slc38a4	nonsynonymous SNV	"Slc38a4:NM_001358058:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358059:exon16:c.A1602G:p.I534M,Slc38a4:NM_001358060:exon16:c.A1602G:p.I534M,Slc38a4:NM_027052:exon16:c.A1602G:p.I534M"	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.557936313	2	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	98293799	12A2p6	cell line	sgMsh2	98293799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.585	89	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon2:c.T5C:p.L2P,Zfp641:NM_173769:exon2:c.T5C:p.L2P"	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9995975	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	98806080	12A2p6	cell line	sgMsh2	98806080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	157	0	0	NA	exonic	Ddn	nonsynonymous SNV	Ddn:NM_001013741:exon2:c.G1330T:p.G444C	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	1	0.999996	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	98863015	12A2p6	cell line	sgMsh2	98863015	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	53	0	0	NA	exonic	Kmt2d	frameshift deletion	Kmt2d:NM_001033276:exon11:c.2453delC:p.P818Hfs*4	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3_p20	chr15	99579305	12A2p6	cell line	sgMsh2	99579305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	79	0	0	NA	exonic	Aqp2	synonymous SNV	Aqp2:NM_009699:exon1:c.C153T:p.G51G	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.593360841	2	0.9791922	GCA	synonymous	NA	NA	NA	NA
M3_p20	chr15	99628662	12A2p6	cell line	sgMsh2	99628662	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.328	149	0	0	NA	exonic	Racgap1	frameshift insertion	"Racgap1:NM_001253808:exon10:c.1018dupC:p.L340Pfs*6,Racgap1:NM_001253809:exon10:c.1018dupC:p.L340Pfs*6,Racgap1:NM_012025:exon11:c.1018dupC:p.L340Pfs*6"	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CAG	frameshift	G	8	GGGGGGGG	1
M3_p20	chr15	100209633	12A2p6	cell line	sgMsh2	100209633	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	162	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon31:c.G3523A:p.E1175K,Dip2b:NM_001159361:exon36:c.G4225A:p.E1409K"	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999972	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	100401578	12A2p6	cell line	sgMsh2	100401578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	112	0	0	NA	exonic	Slc11a2	nonsynonymous SNV	"Slc11a2:NM_001146161:exon12:c.A1171G:p.T391A,Slc11a2:NM_001356952:exon12:c.A379G:p.T127A,Slc11a2:NM_008732:exon12:c.A1171G:p.T391A"	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.885613195	1	0.9932632	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	82	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	1	0.584504709	2	0.9866451	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	102501533	12A2p6	cell line	sgMsh2	102501533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	75	0	0	NA	exonic	Map3k12	synonymous SNV	"Map3k12:NM_009582:exon11:c.T1806C:p.H602H,Map3k12:NM_001163643:exon13:c.T1806C:p.H602H,Map3k12:NM_001358844:exon13:c.T1806C:p.H602H"	15qF3	chr15-3279130-102635134	5	3	2	0.91	4.029540036	NA	3	1	1	0.9989577	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr15	103308984	12A2p6	cell line	sgMsh2	103308984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	85	0	0	NA	exonic	Gpr84	nonsynonymous SNV	Gpr84:NM_030720:exon2:c.T665C:p.I222T	15qF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr15	103462798	12A2p6	cell line	sgMsh2	103462798	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	99	0	0	NA	exonic	Nckap1l	nonsynonymous SNV	Nckap1l:NM_153505:exon7:c.A716C:p.N239T	15qF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	190	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	258	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	3979904	12A2p6	cell line	sgMsh2	3979904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	0	0	NA	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon15:c.T4615C:p.F1539L	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	4128508	12A2p6	cell line	sgMsh2	4128508	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	143	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon6:c.G1506T:p.Q502H	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	29	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M3_p20	chr16	8487424	12A2p6	cell line	sgMsh2	8487424	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	394	0	0	NA	exonic	Mettl22	frameshift deletion	Mettl22:NM_146247:exon9:c.940delA:p.N315Mfs*16	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.943178052	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr16	8696888	12A2p6	cell line	sgMsh2	8696888	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	382	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon19:c.T2082G:p.D694E	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	322	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	1.05E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	149	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.712918622	2	0.9400959	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	10511943	12A2p6	cell line	sgMsh2	10511943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	41	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon10:c.A2318G:p.N773S,Ciita:NM_001243761:exon10:c.A2081G:p.N694S,Ciita:NM_001302618:exon10:c.A2321G:p.N774S,Ciita:NM_007575:exon10:c.A2090G:p.N697S,Ciita:NM_001302619:exon11:c.A2018G:p.N673S"	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9895776	AAC	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3_p20	chr16	11088411	12A2p6	cell line	sgMsh2	11088411	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	77	0	0	NA	exonic	Txndc11	frameshift deletion	Txndc11:NM_029582:exon8:c.1254delC:p.C419Afs*35	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr16	13827447	12A2p6	cell line	sgMsh2	13827447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	403	0	0	NA	exonic	Ntan1	synonymous SNV	"Ntan1:NM_001346109:exon2:c.T220C:p.L74L,Ntan1:NM_001346111:exon2:c.T220C:p.L74L,Ntan1:NM_001346108:exon3:c.T286C:p.L96L,Ntan1:NM_001346110:exon3:c.T286C:p.L96L,Ntan1:NM_001346106:exon4:c.T310C:p.L104L,Ntan1:NM_001346107:exon4:c.T310C:p.L104L,Ntan1:NM_010946:exon4:c.T310C:p.L104L"	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr16	13835196	12A2p6	cell line	sgMsh2	13835196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	35	0	0	NA	exonic	Ntan1	nonsynonymous SNV	"Ntan1:NM_001346111:exon7:c.T611G:p.L204W,Ntan1:NM_001346109:exon8:c.T725G:p.L242W,Ntan1:NM_001346110:exon8:c.T677G:p.L226W,Ntan1:NM_001346106:exon9:c.T701G:p.L234W,Ntan1:NM_001346108:exon9:c.T791G:p.L264W,Ntan1:NM_010946:exon10:c.T815G:p.L272W"	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.983030646	1	0.9809582	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	88	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995692	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	230	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	2.86E-08	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	142	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.420666268	2	0.5094174	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	74	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9988845	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	81	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993067	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	19566134	12A2p6	cell line	sgMsh2	19566134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	244	0	0	NA	exonic	Olfr169	nonsynonymous SNV	Olfr169:NM_001011855:exon1:c.A748G:p.M250V	16qA3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.411810136	3	0.0992995	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	20602046	12A2p6	cell line	sgMsh2	20602046	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	45	0	0	NA	exonic	Vwa5b2	nonsynonymous SNV	"Vwa5b2:NM_001384104:exon16:c.C2609T:p.P870L,Vwa5b2:NM_001384105:exon16:c.C2606T:p.P869L,Vwa5b2:NM_001144953:exon19:c.C2606T:p.P869L"	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9920399	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	21762633	12A2p6	cell line	sgMsh2	21762633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	142	0	0	NA	exonic	Ehhadh	synonymous SNV	Ehhadh:NM_023737:exon7:c.A1608G:p.G536G	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.999989	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	52	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.841332535	1	0.9224019	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	21984223	12A2p6	cell line	sgMsh2	21984223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	161	0	0	NA	exonic	Liph	nonsynonymous SNV	"Liph:NM_001083894:exon2:c.G95T:p.S32I,Liph:NM_001289582:exon2:c.G95T:p.S32I,Liph:NM_153404:exon2:c.G95T:p.S32I"	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.999997	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	22479410	12A2p6	cell line	sgMsh2	22479410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	186	0	0	NA	exonic	Dgkg	nonsynonymous SNV	"Dgkg:NM_001346673:exon23:c.C2107T:p.P703S,Dgkg:NM_138650:exon24:c.C2224T:p.P742S"	16qB1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999995	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	26710559	12A2p6	cell line	sgMsh2	26710559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	221	0	0	NA	exonic	Il1rap	nonsynonymous SNV	"Il1rap:NM_001159317:exon9:c.T1130C:p.V377A,Il1rap:NM_001159318:exon9:c.T1130C:p.V377A,Il1rap:NM_008364:exon9:c.T1130C:p.V377A"	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	5.19E-08	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	30561743	12A2p6	cell line	sgMsh2	30561743	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.41	26	0	0	NA	exonic	Lsg1	frameshift deletion	Lsg1:NM_178069:exon14:c.1875delA:p.K625Nfs*23	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr16	31944509	12A2p6	cell line	sgMsh2	31944509	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.282	54	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T384G:p.N128K	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9956677	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	31944513	12A2p6	cell line	sgMsh2	31944513	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	57	0	0	NA	exonic	Pigz	frameshift deletion	Pigz:NM_172822:exon3:c.388delT:p.L130Cfs*38	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr16	31989060	12A2p6	cell line	sgMsh2	31989060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	128	0	0	NA	exonic	Senp5	nonsynonymous SNV	"Senp5:NM_001357087:exon2:c.A1375G:p.S459G,Senp5:NM_001357088:exon2:c.A1375G:p.S459G,Senp5:NM_177103:exon2:c.A1375G:p.S459G"	16qB2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999716	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	32298440	12A2p6	cell line	sgMsh2	32298440	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.415	32	0	0	NA	exonic	Rnf168	frameshift deletion	Rnf168:NM_027355:exon6:c.818delA:p.N275Ifs*30	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	134	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999811	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	188	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	34198458	12A2p6	cell line	sgMsh2	34198458	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	175	0	0	NA	exonic	Kalrn	frameshift deletion	"Kalrn:NM_001164268:exon25:c.3933delC:p.G1312Afs*64,Kalrn:NM_177357:exon25:c.3933delC:p.G1312Afs*64"	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M3_p20	chr16	35825306	12A2p6	cell line	sgMsh2	35825306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	38	0	0	NA	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon8:c.A1360G:p.T454A	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9872491	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	148	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999927	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	36364275	12A2p6	cell line	sgMsh2	36364275	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	220	0	0	NA	exonic	Cstdc5	synonymous SNV	Cstdc5:NM_001082546:exon2:c.T105C:p.Y35Y	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr16	36919438	12A2p6	cell line	sgMsh2	36919438	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	114	0	0	NA	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon14:c.A8261T:p.E2754V	16qB3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999264	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	43988139	12A2p6	cell line	sgMsh2	43988139	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	71	0	0	NA	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon9:c.G960T:p.K320N,Gramd1c:NM_153528:exon9:c.G960T:p.K320N,Gramd1c:NM_001359085:exon13:c.G1491T:p.K497N"	16qB4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	1	0.9986324	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	190	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	44421131	12A2p6	cell line	sgMsh2	44421131	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	196	0	0	NA	exonic	Cfap44	nonsynonymous SNV	Cfap44:NM_001033247:exon16:c.A1864G:p.T622A	16qB4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.234687497	3	2.40E-09	AAC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	353	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.416238202	3	0.9533708	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	49091132	12A2p6	cell line	sgMsh2	49091132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	149	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon10:c.T926C:p.V309A	16qB5	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999932	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	49163139	12A2p6	cell line	sgMsh2	49163139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	69	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon32:c.A4616G:p.E1539G	16qB5	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9984335	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	56188338	12A2p6	cell line	sgMsh2	56188338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	129	0	0	NA	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_025483:exon24:c.T3080C:p.L1027P,Senp7:NM_001360073:exon25:c.T2882C:p.L961P"	16qC1.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999735	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	206	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	94	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	1	0.9997135	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	57570454	12A2p6	cell line	sgMsh2	57570454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	98	0	0	NA	exonic	Filip1l	nonsynonymous SNV	"Filip1l:NM_001177871:exon2:c.A690C:p.K230N,Filip1l:NM_001040397:exon5:c.A1404C:p.K468N"	16qC1.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997817	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	189	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr16	59201814	12A2p6	cell line	sgMsh2	59201814	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	186	0	0	NA	exonic	Olfr198	nonsynonymous SNV	Olfr198:NM_001011808:exon1:c.C611A:p.A204D	16qC1.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.398525938	3	0.9349683	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.3387	62	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M3_p20	chr16	65523621	12A2p6	cell line	sgMsh2	65523621	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	135	0	0	NA	exonic	Pou1f1	synonymous SNV	"Pou1f1:NM_001362468:exon1:c.T171C:p.Y57Y,Pou1f1:NM_008849:exon2:c.T201C:p.Y67Y"	16qC1.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999824	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr16	77080387	12A2p6	cell line	sgMsh2	77080387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	128	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon15:c.T1760C:p.M587T	16qC3.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999716	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	77081501	12A2p6	cell line	sgMsh2	77081501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	48	0	0	NA	exonic	Usp25	synonymous SNV	Usp25:NM_013918:exon16:c.T1812C:p.A604A	16qC3.1	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.885613195	1	0.9588611	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr16	81437723	12A2p6	cell line	sgMsh2	81437723	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	83	0	0	NA	exonic	Ncam2	synonymous SNV	"Ncam2:NM_001113208:exon4:c.C465A:p.V155V,Ncam2:NM_010954:exon4:c.C465A:p.V155V"	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993948	TCA	synonymous	CAC	8	CACCACCA	NA
M3_p20	chr16	85550087	12A2p6	cell line	sgMsh2	85550087	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	38	0	0	NA	exonic	Cyyr1	nonsynonymous SNV	Cyyr1:NM_144853:exon1:c.C22T:p.R8W	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	1	0.9872491	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	87382636	12A2p6	cell line	sgMsh2	87382636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	151	0	0	NA	exonic	Ltn1	nonsynonymous SNV	Ltn1:NM_001081068:exon26:c.G4636A:p.E1546K	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	0.903325459	1	0.999119	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	87408812	12A2p6	cell line	sgMsh2	87408812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	205	0	0	NA	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon16:c.A2964G:p.Q988Q	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	92	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996717	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	90950413	12A2p6	cell line	sgMsh2	90950413	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.421	34	0	0	NA	exonic	Synj1	frameshift deletion	"Synj1:NM_001045515:exon25:c.3320delC:p.P1107Lfs*48,Synj1:NM_001164483:exon25:c.3440delC:p.P1147Lfs*46"	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	200	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999998	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	104	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998548	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	95409768	12A2p6	cell line	sgMsh2	95409768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	exonic	Erg	nonsynonymous SNV	"Erg:NM_001302153:exon2:c.T203C:p.M68T,Erg:NM_001302154:exon2:c.T203C:p.M68T,Erg:NM_001302179:exon3:c.T224C:p.M75T,Erg:NM_001302183:exon3:c.T224C:p.M75T,Erg:NM_133659:exon3:c.T224C:p.M75T,Erg:NM_001302152:exon4:c.T224C:p.M75T"	16qC4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993522	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	96608180	12A2p6	cell line	sgMsh2	96608180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	158	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon32:c.A5542G:p.T1848A	16qC4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999963	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr16	96648186	12A2p6	cell line	sgMsh2	96648186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	250	0	0	NA	exonic	Dscam	nonsynonymous SNV	Dscam:NM_031174:exon24:c.A4211G:p.N1404S	16qC4	chr16-4630421-97886207	3	2	1	0.91	4.029540036	NA	1	1	1	8.08E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	7236056	12A2p6	cell line	sgMsh2	7236056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	108	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon3:c.T227C:p.V76A	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.991886778	1	0.9998507	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	7292827	12A2p6	cell line	sgMsh2	7292827	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	163	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon17:c.T1663A:p.F555I	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999974	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	7771665	12A2p6	cell line	sgMsh2	7771665	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	87	0	0	NA	exonic	Fndc1	synonymous SNV	Fndc1:NM_001081416:exon9:c.C3345A:p.A1115A	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	2	1	1	0.9995388	TGG	synonymous	NA	NA	NA	NA
M3_p20	chr17	7805009	12A2p6	cell line	sgMsh2	7805009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	251	0	0	NA	exonic	Fndc1	nonsynonymous SNV	Fndc1:NM_001081416:exon2:c.T113C:p.L38P	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.898897393	1	0.9999606	CAG	nonsynonymous	GTGG	8	GTGGGTGG	NA
M3_p20	chr17	7933026	12A2p6	cell line	sgMsh2	7933026	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	226	0	0	NA	exonic	Tagap	nonsynonymous SNV	Tagap:NM_145968:exon10:c.A1042T:p.T348S	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	2	1	1	3.72E-08	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	9005207	12A2p6	cell line	sgMsh2	9005207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.534	75	0	0	NA	exonic	1700010I14Rik	synonymous SNV	"1700010I14Rik:NM_001347544:exon8:c.T1291C:p.L431L,1700010I14Rik:NM_025851:exon8:c.T1291C:p.L431L"	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	3	1	1	0.9989577	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr17	9668533	12A2p6	cell line	sgMsh2	9668533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	161	0	0	NA	exonic	Pabpc6	nonsynonymous SNV	Pabpc6:NM_001163836:exon1:c.T1088C:p.M363T	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.876757063	1	0.9973149	CAT	nonsynonymous	CATT	8	CATTCATT	NA
M3_p20	chr17	12662768	12A2p6	cell line	sgMsh2	12662768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	119	0	0	NA	exonic	Slc22a1	nonsynonymous SNV	Slc22a1:NM_009202:exon5:c.T953C:p.L318P	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.761627348	1	0.5353897	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	13225560	12A2p6	cell line	sgMsh2	13225560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	355	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A23G:p.K8R	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.522511785	2	2.58E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	1470	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.655353764	2	1	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr17	13226786	12A2p6	cell line	sgMsh2	13226786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	760	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A1249G:p.T417A	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.411810136	3	0.9999583	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	13888230	12A2p6	cell line	sgMsh2	13888230	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	120	0	0	NA	exonic	Afdn	synonymous SNV	Afdn:NM_010806:exon29:c.T4059A:p.P1353P	17qA1	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999511	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	14344349	12A2p6	cell line	sgMsh2	14344349	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	257	0	0	NA	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon5:c.G486A:p.P162P	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	2	1	1	5.40E-09	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr17	14670751	12A2p6	cell line	sgMsh2	14670751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon19:c.T3116C:p.V1039A	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.95646225	1	0.9999089	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	14685891	12A2p6	cell line	sgMsh2	14685891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	262	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon5:c.A746G:p.H249R	17qA2	chr17-3079405-14988397	5	3	2	0.91	4.029540036	NA	1	0.673066028	2	0.9999421	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	15402427	12A2p6	cell line	sgMsh2	15402427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	231	0	0	NA	exonic	Fam120b	synonymous SNV	"Fam120b:NM_001357822:exon2:c.T666C:p.L222L,Fam120b:NM_024203:exon2:c.T666C:p.L222L"	17qA2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	2.68E-08	TTC	synonymous	NA	NA	NA	NA
M3_p20	chr17	15423082	12A2p6	cell line	sgMsh2	15423082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	214	0	0	NA	exonic	Fam120b	nonsynonymous SNV	"Fam120b:NM_001357822:exon7:c.A2122G:p.N708D,Fam120b:NM_024203:exon7:c.A2122G:p.N708D"	17qA2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	17537014	12A2p6	cell line	sgMsh2	17537014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	308	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon15:c.T2623C:p.L875L	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr17	17733596	12A2p6	cell line	sgMsh2	17733596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	463	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2021G:p.K674R	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.788195743	2	0.5837698	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	18105985	12A2p6	cell line	sgMsh2	18105985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	439	0	0	NA	exonic	Vmn2r91	synonymous SNV	"Vmn2r91:NM_001104540:exon3:c.T531C:p.P177P,Vmn2r91:NM_001385124:exon3:c.T531C:p.P177P"	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr17	18243723	12A2p6	cell line	sgMsh2	18243723	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	599	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A2304C:p.E768D	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	18305080	12A2p6	cell line	sgMsh2	18305080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	259	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon3:c.T999C:p.F333F	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	4.84E-09	TTA	synonymous	NA	NA	NA	NA
M3_p20	chr17	18325841	12A2p6	cell line	sgMsh2	18325841	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	1455	0	0	NA	exonic	Vmn2r93	synonymous SNV	Vmn2r93:NM_001104542:exon6:c.T1974G:p.A658A	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr17	18582393	12A2p6	cell line	sgMsh2	18582393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.605	361	0	0	NA	exonic	Vmn2r96	synonymous SNV	Vmn2r96:NM_001385081:exon3:c.T564C:p.P188P	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	3	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	230	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.97860258	1	0.9999999	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.287	595	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	19066034	12A2p6	cell line	sgMsh2	19066034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	957	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A793G:p.M265V	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	19080947	12A2p6	cell line	sgMsh2	19080947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	1443	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon6:c.A2210G:p.N737S	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.841332535	1	1.47E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	19522553	12A2p6	cell line	sgMsh2	19522553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	758	0	0	NA	exonic	Vmn2r100	synonymous SNV	Vmn2r100:NM_001104562:exon3:c.G1188A:p.E396E	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	AGA	synonymous	NA	NA	NA	NA
M3_p20	chr17	19577445	12A2p6	cell line	sgMsh2	19577445	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	252	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon1:c.T215A:p.I72K	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	7.18E-09	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	19611804	12A2p6	cell line	sgMsh2	19611804	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	1201	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon6:c.G2061C:p.R687S	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.447234663	2	0.9982778	GGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20030036	12A2p6	cell line	sgMsh2	20030036	A	G	SNV	Mutect2;Strelka2	2	0.207	1044	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.T1972C:p.F658L	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.916609657	1	1	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20030038	12A2p6	cell line	sgMsh2	20030038	G	T	SNV	Mutect2;Strelka2	2	0.208	1036	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.C1970A:p.T657N	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.921037723	1	1	GGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20047997	12A2p6	cell line	sgMsh2	20047997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	151	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon1:c.A209G:p.Y70C	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999941	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20357947	12A2p6	cell line	sgMsh2	20357947	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	278	0	0	NA	exonic	Vmn2r107	nonsynonymous SNV	Vmn2r107:NM_001104569:exon4:c.C1517T:p.S506L	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.708490556	2	0.9991647	TCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20374957	12A2p6	cell line	sgMsh2	20374957	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	833	0	0	NA	exonic	Vmn2r107	nonsynonymous SNV	Vmn2r107:NM_001104569:exon6:c.G1771T:p.A591S	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.128413913	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20470994	12A2p6	cell line	sgMsh2	20470994	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	396	0	0	NA	exonic	Vmn2r108	nonsynonymous SNV	Vmn2r108:NM_001104570:exon3:c.A1266C:p.K422N	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.97860258	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20502730	12A2p6	cell line	sgMsh2	20502730	T	-	Deletion	Mutect2;Vardict	2	0.212	201	0	0	NA	exonic	Vmn1r225	frameshift deletion	Vmn1r225:NM_134194:exon1:c.432delT:p.P147Lfs*1	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.938749986	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr17	20502847	12A2p6	cell line	sgMsh2	20502847	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.269	297	0	0	NA	exonic	Vmn1r225	frameshift insertion	Vmn1r225:NM_134194:exon1:c.550dupT:p.W185Lfs*4	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
M3_p20	chr17	20541410	12A2p6	cell line	sgMsh2	20541410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	119	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.T1684C:p.Y562H	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.810336073	1	0.8935047	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20574454	12A2p6	cell line	sgMsh2	20574454	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.201	350	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon6:c.T1952G:p.L651R	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.890041261	1	0.9999958	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	20960476	12A2p6	cell line	sgMsh2	20960476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	236	0	0	NA	exonic	Ppp2r1a	nonsynonymous SNV	Ppp2r1a:NM_016891:exon10:c.T1139C:p.V380A	17qA3.2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.94E-08	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	21823844	12A2p6	cell line	sgMsh2	21823844	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	120	0	0	NA	exonic	Zfp820	nonsynonymous SNV	Zfp820:NM_029281:exon3:c.G30T:p.Q10H	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999511	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	22146436	12A2p6	cell line	sgMsh2	22146436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	375	0	0	NA	exonic	Zfp947	nonsynonymous SNV	Zfp947:NM_177596:exon5:c.T256C:p.C86R	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.810336073	1	0.9481036	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	22573115	12A2p6	cell line	sgMsh2	22573115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	470	0	0	NA	exonic	Vmn2r111	synonymous SNV	Vmn2r111:NM_001104573:exon1:c.T159A:p.P53P	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.947606118	1	1.01E-09	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	22602492	12A2p6	cell line	sgMsh2	22602492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	312	0	0	NA	exonic	Vmn2r112	nonsynonymous SNV	Vmn2r112:NM_001104575:exon2:c.A445G:p.T149A	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.522511785	2	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	23400976	12A2p6	cell line	sgMsh2	23400976	C	T	SNV	Mutect2;Vardict	2	0.029	808	0	0	NA	exonic	Vmn2r116	synonymous SNV	Vmn2r116:NM_001104580:exon6:c.C1683T:p.D561D	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.128413913	3	1	ACC	synonymous	NA	NA	NA	NA
M3_p20	chr17	24185323	12A2p6	cell line	sgMsh2	24185323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	128	0	0	NA	exonic	Tbc1d24	synonymous SNV	"Tbc1d24:NM_001163847:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163848:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163849:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163850:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163851:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163853:exon3:c.T846C:p.P282P,Tbc1d24:NM_173186:exon3:c.T846C:p.P282P,Tbc1d24:NM_001163852:exon4:c.T846C:p.P282P"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999716	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	24681426	12A2p6	cell line	sgMsh2	24681426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	173	0	0	NA	exonic	Zfp598	frameshift deletion	"Zfp598:NM_001348231:exon12:c.2682delC:p.S896Pfs*14,Zfp598:NM_183149:exon12:c.2691delC:p.S899Pfs*14"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.867900931	NA	NA	TCC	frameshift	CCCT	8	CCCTCCCT	-1
M3_p20	chr17	24887906	12A2p6	cell line	sgMsh2	24887906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	66	0	0	NA	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon2:c.T553C:p.S185P,Spsb3:NM_001163751:exon2:c.T208C:p.S70P,Spsb3:NM_001374602:exon2:c.T115C:p.S39P,Spsb3:NM_027141:exon2:c.T220C:p.S74P"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.801479941	1	0.8539287	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	24897219	12A2p6	cell line	sgMsh2	24897219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	237	0	0	NA	exonic	Nme3	nonsynonymous SNV	Nme3:NM_019730:exon5:c.T398C:p.V133A	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.783767677	1	0.5815408	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	25750133	12A2p6	cell line	sgMsh2	25750133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	98	0	0	NA	exonic	Msln	nonsynonymous SNV	"Msln:NM_018857:exon12:c.A1277C:p.Q426P,Msln:NM_001356286:exon13:c.A1277C:p.Q426P,Msln:NM_001374653:exon13:c.A1289C:p.Q430P"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9997817	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	25875689	12A2p6	cell line	sgMsh2	25875689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	45	0	0	NA	exonic	Mettl26	nonsynonymous SNV	Mettl26:NM_026686:exon1:c.T160C:p.W54R	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.996314844	1	0.9915786	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	102	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9998337	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	26939091	12A2p6	cell line	sgMsh2	26939091	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	31	0	0	NA	exonic	Cuta	nonsynonymous SNV	Cuta:NM_026307:exon3:c.C44G:p.A15G	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.633213434	2	0.503143	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	51	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.712918622	1	0.5544319	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	113	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.898897393	1	0.9960747	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	28691801	12A2p6	cell line	sgMsh2	28691801	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	26	0	0	NA	exonic	Mapk14	nonsynonymous SNV	"Mapk14:NM_001168508:exon1:c.C62A:p.P21H,Mapk14:NM_011951:exon1:c.C62A:p.P21H"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	3	1	1	0.9716191	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	28858946	12A2p6	cell line	sgMsh2	28858946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	163	0	0	NA	exonic	Pnpla1	nonsynonymous SNV	Pnpla1:NM_001034885:exon1:c.A80G:p.Y27C	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.646497632	2	0.998979	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	29301434	12A2p6	cell line	sgMsh2	29301435	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	108	0	0	NA	exonic	BC004004	frameshift deletion	"BC004004:NM_001379078:exon8:c.1052_1053del:p.S353Gfs*10,BC004004:NM_001379077:exon9:c.1031_1032del:p.S346Gfs*10,BC004004:NM_030561:exon9:c.1031_1032del:p.S346Gfs*10"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	ACT	frameshift	NA	NA	NA	-2
M3_p20	chr17	29526332	12A2p6	cell line	sgMsh2	29526332	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.238	245	0	0	NA	exonic	Tmem217	stopgain	"Tmem217:NM_001162902:exon2:c.T423G:p.Y141X,Tmem217:NM_001162901:exon3:c.T423G:p.Y141X"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1.10E-08	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	29526335	12A2p6	cell line	sgMsh2	29526335	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.241	244	0	0	NA	exonic	Tmem217	synonymous SNV	"Tmem217:NM_001162902:exon2:c.A420C:p.L140L,Tmem217:NM_001162901:exon3:c.A420C:p.L140L"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1.17E-08	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	219	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.442806597	2	0.8670689	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	30719001	12A2p6	cell line	sgMsh2	30719001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	175	0	0	NA	exonic	Dnah8	synonymous SNV	Dnah8:NM_013811:exon35:c.A4851G:p.E1617E	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.606645038	2	0.9999504	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	163	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.792623809	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr17	30875031	12A2p6	cell line	sgMsh2	30875031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	243	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon93:c.A14098C:p.T4700P	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.655353764	2	0.9999694	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	31188437	12A2p6	cell line	sgMsh2	31188437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	238	0	0	NA	exonic	Tmprss3	nonsynonymous SNV	"Tmprss3:NM_080727:exon8:c.T815C:p.V272A,Tmprss3:NM_001163776:exon9:c.T881C:p.V294A"	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.938749986	1	0.9999976	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	31218058	12A2p6	cell line	sgMsh2	31218058	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	142	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.A648C:p.K216N	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.999989	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	31218128	12A2p6	cell line	sgMsh2	31218128	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	80	0	0	NA	exonic	Ubash3a	nonsynonymous SNV	Ubash3a:NM_177823:exon5:c.T718A:p.Y240N	17qA3.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.987458712	1	0.9989539	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	32141504	12A2p6	cell line	sgMsh2	32141504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	30	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.T4452C:p.R1484R	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.881185129	1	0.9298466	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr17	32147336	12A2p6	cell line	sgMsh2	32147336	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.147	40	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon18:c.G2923A:p.G975R	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.650925698	2	0.5729915	CCG	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr17	32156258	12A2p6	cell line	sgMsh2	32156258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	208	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon7:c.T1189G:p.S397A	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	32158898	12A2p6	cell line	sgMsh2	32158898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	91	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon3:c.G285A:p.Q95Q	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.686350226	2	9.26E-07	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr17	32305325	12A2p6	cell line	sgMsh2	32305325	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	328	0	0	NA	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon12:c.A1654C:p.I552L,Akap8:NM_019774:exon14:c.A1996C:p.I666L"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.881185129	1	0.9999779	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	32377792	12A2p6	cell line	sgMsh2	32377792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	129	0	0	NA	exonic	Wiz	nonsynonymous SNV	Wiz:NM_001372227:exon3:c.C967A:p.L323I	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999735	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	33381058	12A2p6	cell line	sgMsh2	33381058	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.396	179	0	0	NA	exonic	Zfp101	frameshift deletion	Zfp101:NM_009542:exon4:c.1723delA:p.I575Yfs*3	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3_p20	chr17	33433082	12A2p6	cell line	sgMsh2	33433082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	101	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A115G:p.M39V	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.863472865	1	0.9803625	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	33433109	12A2p6	cell line	sgMsh2	33433109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A142G:p.T48A	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.912181591	1	0.9965684	AAC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr17	33538279	12A2p6	cell line	sgMsh2	33538279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	353	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon8:c.C9T:p.H3H,Adamts10:NM_001329143:exon9:c.C9T:p.H3H,Adamts10:NM_001329203:exon10:c.C102T:p.H34H,Adamts10:NM_172619:exon10:c.C1206T:p.H402H"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.845760601	1	0.9991929	ACG	synonymous	NA	NA	NA	NA
M3_p20	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	38	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9872491	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	34188199	12A2p6	cell line	sgMsh2	34188199	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	55	0	0	NA	exonic	Tap1	nonsynonymous SNV	"Tap1:NM_001161730:exon1:c.T320G:p.L107R,Tap1:NM_013683:exon1:c.T320G:p.L107R"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9959514	CTG	nonsynonymous	TACTG	10	TACTGTACTG	NA
M3_p20	chr17	34625876	12A2p6	cell line	sgMsh2	34625876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	340	0	0	NA	exonic	Ppt2	synonymous SNV	"Ppt2:NM_019441:exon3:c.T393G:p.S131S,Ppt2:NM_001302393:exon4:c.T393G:p.S131S,Ppt2:NM_001302394:exon4:c.T393G:p.S131S,Ppt2:NM_001302395:exon4:c.T393G:p.S131S,Ppt2:NM_001302396:exon4:c.T393G:p.S131S"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1.02E-09	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	34839827	12A2p6	cell line	sgMsh2	34839827	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.142	86	0	0	NA	exonic	Skiv2l	nonsynonymous SNV	Skiv2l:NM_021337:exon27:c.T3398C:p.V1133A	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.628785368	2	0.9651085	TAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr17	35011299	12A2p6	cell line	sgMsh2	35011299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	180	0	0	NA	exonic	Vars	nonsynonymous SNV	Vars:NM_011690:exon11:c.T1439C:p.L480P	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.730630886	2	0.9309501	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	35019786	12A2p6	cell line	sgMsh2	35019786	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	56	0	0	NA	exonic	Vwa7	nonsynonymous SNV	"Vwa7:NM_001347347:exon6:c.A849T:p.E283D,Vwa7:NM_138582:exon6:c.A849T:p.E283D"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.836904469	1	9.65E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	35066160	12A2p6	cell line	sgMsh2	35066160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	157	0	0	NA	exonic	Mpig6b	nonsynonymous SNV	"Mpig6b:NM_001033221:exon1:c.T11C:p.V4A,Mpig6b:NM_001191012:exon1:c.T11C:p.V4A"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.999996	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	35082910	12A2p6	cell line	sgMsh2	35082910	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	132	0	0	NA	exonic	Ly6g6f	synonymous SNV	Ly6g6f:NM_001163192:exon3:c.G567A:p.G189G	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999784	GCC	synonymous	NA	NA	NA	NA
M3_p20	chr17	35637549	12A2p6	cell line	sgMsh2	35637549	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	226	0	0	NA	exonic	Mucl3	stopgain	Mucl3:NM_001033366:exon2:c.T1157A:p.L386X	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	3.72E-08	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	35659098	12A2p6	cell line	sgMsh2	35659098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	86	0	0	NA	exonic	Vars2	nonsynonymous SNV	Vars2:NM_175137:exon24:c.A2398C:p.S800R	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.526939851	2	0.9945418	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	35978435	12A2p6	cell line	sgMsh2	35978435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	228	0	0	NA	exonic	Prr3	nonsynonymous SNV	"Prr3:NM_145487:exon2:c.A121G:p.S41G,Prr3:NM_001384114:exon3:c.A121G:p.S41G,Prr3:NM_001384116:exon3:c.A121G:p.S41G"	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.788195743	1	0.6746805	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	36670141	12A2p6	cell line	sgMsh2	36670141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	231	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon5:c.A902G:p.E301G	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.814764139	1	0.9436321	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	36947133	12A2p6	cell line	sgMsh2	36947133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	55	0	0	NA	exonic	Rnf39	nonsynonymous SNV	Rnf39:NM_001099632:exon4:c.C556T:p.P186S	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9959514	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	36988997	12A2p6	cell line	sgMsh2	36988997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	409	0	0	NA	exonic	H2-M5	nonsynonymous SNV	H2-M5:NM_001115075:exon2:c.T284C:p.I95T	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	37197051	12A2p6	cell line	sgMsh2	37197051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	57	0	0	NA	exonic	Olfr94	nonsynonymous SNV	Olfr94:NM_001011518:exon1:c.A916G:p.S306G	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9964644	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	37270790	12A2p6	cell line	sgMsh2	37270790	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	134	0	0	NA	exonic	H2-M3	synonymous SNV	H2-M3:NM_013819:exon2:c.C342A:p.G114G	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.801479941	1	0.8539835	GCG	synonymous	NA	NA	NA	NA
M3_p20	chr17	37336968	12A2p6	cell line	sgMsh2	37336968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	695	0	0	NA	exonic	Olfr103	nonsynonymous SNV	Olfr103:NM_146833:exon1:c.A263G:p.K88R	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.863472865	1	0.9999999	TTT	nonsynonymous	TTTG	9	TTTGTTTGT	NA
M3_p20	chr17	37590059	12A2p6	cell line	sgMsh2	37590059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	1103	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.T293C:p.M98T	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.921037723	1	1	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	37590324	12A2p6	cell line	sgMsh2	37590324	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.165	476	0	0	NA	exonic	Olfr114	nonsynonymous SNV	Olfr114:NM_146287:exon1:c.A28T:p.S10C	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.730630886	2	0.9999436	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	37672835	12A2p6	cell line	sgMsh2	37672835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	531	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.A811G:p.S271G	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	870	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.845760601	1	0.9999997	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M3_p20	chr17	37923763	12A2p6	cell line	sgMsh2	37923763	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	1162	0	0	NA	exonic	Olfr128	nonsynonymous SNV	Olfr128:NM_206816:exon1:c.C196A:p.L66I	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.262	146	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M3_p20	chr17	38130501	12A2p6	cell line	sgMsh2	38130501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	309	0	0	NA	exonic	Olfr132	synonymous SNV	Olfr132:NM_001005481:exon1:c.A690G:p.S230S	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.13E-09	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	38148878	12A2p6	cell line	sgMsh2	38148878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	520	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.T289C:p.C97R	17qB1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	725	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.867900931	1	1.27E-08	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	40783774	12A2p6	cell line	sgMsh2	40783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	479	0	0	NA	exonic	Crisp2	nonsynonymous SNV	"Crisp2:NM_001204071:exon7:c.T409C:p.Y137H,Crisp2:NM_009420:exon7:c.T409C:p.Y137H"	17qB2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.863472865	1	0.9999935	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	40880525	12A2p6	cell line	sgMsh2	40880525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	54	0	0	NA	exonic	9130008F23Rik	synonymous SNV	9130008F23Rik:NM_027834:exon1:c.A12G:p.L4L	17qB2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.735058952	1	0.6311555	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr17	42834239	12A2p6	cell line	sgMsh2	42834239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	92	0	0	NA	exonic	Cd2ap	nonsynonymous SNV	Cd2ap:NM_009847:exon5:c.T467G:p.L156R	17qB3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.947606118	1	0.9982914	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	43487197	12A2p6	cell line	sgMsh2	43487197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	620	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon8:c.A706G:p.S236G	17qB3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	46241457	12A2p6	cell line	sgMsh2	46241457	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.409	60	0	0	NA	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon30:c.3215delT:p.F1073Sfs*4	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	198	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999998	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	46306582	12A2p6	cell line	sgMsh2	46306582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	89	0	0	NA	exonic	Abcc10	synonymous SNV	"Abcc10:NM_145140:exon14:c.C3403T:p.L1135L,Abcc10:NM_001347396:exon15:c.C3526T:p.L1176L,Abcc10:NM_170680:exon15:c.C3526T:p.L1176L"	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9995975	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr17	46310518	12A2p6	cell line	sgMsh2	46310518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon11:c.G2585T:p.G862V,Abcc10:NM_001347396:exon12:c.G2708T:p.G903V,Abcc10:NM_170680:exon12:c.G2708T:p.G903V"	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.912181591	1	0.9965684	ACC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	46579147	12A2p6	cell line	sgMsh2	46579147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	112	0	0	NA	exonic	Ptk7	synonymous SNV	Ptk7:NM_175168:exon10:c.A1497G:p.P499P	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.575648577	2	0.9989352	GTG	synonymous	GGT	8	GGTGGTGG	NA
M3_p20	chr17	46801131	12A2p6	cell line	sgMsh2	46801131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	72	0	0	NA	exonic	Bicral	nonsynonymous SNV	Bicral:NM_001100452:exon11:c.A3142G:p.K1048E	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9987222	TTT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr17	49459065	12A2p6	cell line	sgMsh2	49459065	A	G	SNV	Mutect2;MuSe;Vardict	3	0.286	16	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001379372:exon24:c.T2970C:p.R990R,Daam2:NM_001008231:exon25:c.T3114C:p.R1038R,Daam2:NM_001379371:exon25:c.T3054C:p.R1018R"	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9454051	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr17	49471978	12A2p6	cell line	sgMsh2	49471978	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	135	0	0	NA	exonic	Daam2	nonsynonymous SNV	"Daam2:NM_001379372:exon17:c.G2130T:p.K710N,Daam2:NM_001008231:exon18:c.G2274T:p.K758N,Daam2:NM_001379371:exon18:c.G2214T:p.K738N"	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999824	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	52893952	12A2p6	cell line	sgMsh2	52893952	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.343	254	0	0	NA	exonic	Kcnh8	frameshift insertion	Kcnh8:NM_001031811:exon9:c.1414dupA:p.I472Nfs*7	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M3_p20	chr17	53401448	12A2p6	cell line	sgMsh2	53401448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	117	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon11:c.T2193C:p.A731A	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.99994	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	53679523	12A2p6	cell line	sgMsh2	53679523	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	215	0	0	NA	exonic	Sgo1	synonymous SNV	Sgo1:NM_028232:exon7:c.A639G:p.A213A	17qC	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	56270628	12A2p6	cell line	sgMsh2	56270628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	157	0	0	NA	exonic	Ticam1	nonsynonymous SNV	Ticam1:NM_174989:exon2:c.T1466C:p.I489T	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.999996	GAT	nonsynonymous	G	5	GGGGG	NA
M3_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	327	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.695206358	2	0.9999603	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	57053216	12A2p6	cell line	sgMsh2	57053216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	94	0	0	NA	exonic	Slc25a23	nonsynonymous SNV	"Slc25a23:NM_001379067:exon7:c.A925G:p.I309V,Slc25a23:NM_001379068:exon7:c.A925G:p.I309V"	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.929893855	1	0.9972687	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	57220993	12A2p6	cell line	sgMsh2	57220993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	157	0	0	NA	exonic	C3	nonsynonymous SNV	C3:NM_009778:exon17:c.A2225G:p.H742R	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.597788906	2	0.9998973	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	57420469	12A2p6	cell line	sgMsh2	57420469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	248	0	0	NA	exonic	Adgre1	synonymous SNV	"Adgre1:NM_001355722:exon12:c.T1398C:p.A466A,Adgre1:NM_001355723:exon12:c.T1350C:p.A450A,Adgre1:NM_010130:exon12:c.T1398C:p.A466A"	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.912181591	1	0.9999859	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	57522504	12A2p6	cell line	sgMsh2	57522504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	390	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon4:c.A1374T:p.K458N,Vmn2r120:NM_001104591:exon5:c.A1392T:p.K464N"	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.867900931	1	0.9999761	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	58294347	12A2p6	cell line	sgMsh2	58294347	A	-	Deletion	Mutect2;Vardict	2	0.149	225	0	0	NA	exonic	Cntnap5c	frameshift deletion	Cntnap5c:NM_001081653:exon16:c.2489delA:p.I831Sfs*11	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.65978183	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr17	58313752	12A2p6	cell line	sgMsh2	58313752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	421	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.T2825C:p.L942P	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	58973352	12A2p6	cell line	sgMsh2	58973352	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	136	0	0	NA	exonic	Pdzph1	nonsynonymous SNV	Pdzph1:NM_027001:exon3:c.G1934T:p.R645I	17qD	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.907753525	1	0.9987906	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	66685624	12A2p6	cell line	sgMsh2	66685624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	189	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon28:c.A3995G:p.N1332S,Ptprm:NM_001357625:exon30:c.A4097G:p.N1366S"	17qE1.1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	67756754	12A2p6	cell line	sgMsh2	67756754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	126	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon16:c.T2272C:p.C758R	17qE1.1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.650925698	2	0.9912598	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	67763827	12A2p6	cell line	sgMsh2	67763827	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	199	0	0	NA	exonic	Lama1	frameshift deletion	Lama1:NM_008480:exon18:c.2480delC:p.P828Rfs*50	17qE1.1	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.983030646	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr17	69388393	12A2p6	cell line	sgMsh2	69388393	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	400	0	0	NA	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.C1085T:p.A362V,Zbtb14:NM_001356283:exon3:c.C1085T:p.A362V,Zbtb14:NM_009547:exon3:c.C1085T:p.A362V"	17qE1.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	71578139	12A2p6	cell line	sgMsh2	71578139	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	194	0	0	NA	exonic	Spdya	nonsynonymous SNV	"Spdya:NM_001142631:exon6:c.G587A:p.R196Q,Spdya:NM_029254:exon6:c.G587A:p.R196Q"	17qE1.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.6376415	2	0.9998905	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	71828569	12A2p6	cell line	sgMsh2	71828569	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	60	0	0	NA	exonic	Clip4	frameshift deletion	"Clip4:NM_175378:exon10:c.1174delT:p.Y392Tfs*4,Clip4:NM_001271483:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_001271484:exon11:c.1315delT:p.Y439Tfs*4,Clip4:NM_030179:exon11:c.1315delT:p.Y439Tfs*4"	17qE1.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CTA	frameshift	NA	NA	NA	-1
M3_p20	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.454	9	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9139942	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	73816404	12A2p6	cell line	sgMsh2	73816404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	100	0	0	NA	exonic	Ehd3	nonsynonymous SNV	Ehd3:NM_020578:exon2:c.A401G:p.N134S	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9998094	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	73943875	12A2p6	cell line	sgMsh2	73943875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	282	0	0	NA	exonic	Xdh	synonymous SNV	Xdh:NM_011723:exon2:c.A81T:p.T27T	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.885613195	1	0.9999495	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	74634868	12A2p6	cell line	sgMsh2	74634868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	238	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon42:c.T8210C:p.L2737P	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	1.70E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	74668815	12A2p6	cell line	sgMsh2	74668815	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	107	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon63:c.G12912T:p.W4304C	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9998816	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	74840305	12A2p6	cell line	sgMsh2	74840305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	135	0	0	NA	exonic	Ttc27	synonymous SNV	Ttc27:NM_152817:exon16:c.A1851G:p.K617K	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.929893855	1	0.9995491	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	75282990	12A2p6	cell line	sgMsh2	75282990	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	425	0	0	NA	exonic	Ltbp1	nonsynonymous SNV	"Ltbp1:NM_001331233:exon11:c.C1608A:p.S536R,Ltbp1:NM_001331234:exon11:c.C1611A:p.S537R,Ltbp1:NM_001331235:exon11:c.C1449A:p.S483R,Ltbp1:NM_001331236:exon11:c.C1452A:p.S484R,Ltbp1:NM_001331237:exon11:c.C1452A:p.S484R,Ltbp1:NM_206958:exon11:c.C1611A:p.S537R,Ltbp1:NM_019919:exon15:c.C2565A:p.S855R"	17qE2	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.619929236	2	1.02E-09	GCC	nonsynonymous	GCCA	8	GCCAGCCA	NA
M3_p20	chr17	78951959	12A2p6	cell line	sgMsh2	78951959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	300	0	0	NA	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon18:c.T2286C:p.S762S,Prkd3:NM_001171004:exon19:c.T2571C:p.S857S,Prkd3:NM_029239:exon19:c.T2568C:p.S856S"	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.845760601	1	0.9981981	CAC	synonymous	CAT	8	CATCATCA	NA
M3_p20	chr17	78952754	12A2p6	cell line	sgMsh2	78952754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	exonic	Prkd3	synonymous SNV	"Prkd3:NM_001171005:exon17:c.T2137C:p.L713L,Prkd3:NM_001171004:exon18:c.T2422C:p.L808L,Prkd3:NM_029239:exon18:c.T2419C:p.L807L"	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.646497632	2	0.9998319	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	314	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.965318382	1	4.80E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	79865139	12A2p6	cell line	sgMsh2	79865139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	233	0	0	NA	exonic	Atl2	nonsynonymous SNV	"Atl2:NM_001357752:exon3:c.T401C:p.L134S,Atl2:NM_001357753:exon3:c.T401C:p.L134S,Atl2:NM_019717:exon3:c.T401C:p.L134S"	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	0.952034184	1	0.999999	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	80216772	12A2p6	cell line	sgMsh2	80216772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	443	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.T859C:p.Y287H	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	80433721	12A2p6	cell line	sgMsh2	80433721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	115	0	0	NA	exonic	Sos1	nonsynonymous SNV	Sos1:NM_009231:exon10:c.A1634T:p.Q545L	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999313	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	80644808	12A2p6	cell line	sgMsh2	80644808	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	210	0	0	NA	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon9:c.G568A:p.G190R,Map4k3:NM_001360278:exon9:c.G568A:p.G190R"	17qE3	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	84692924	12A2p6	cell line	sgMsh2	84692924	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	119	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon5:c.A530T:p.Y177F,Abcg8:NM_001347418:exon6:c.A908T:p.Y303F,Abcg8:NM_026180:exon6:c.A911T:p.Y304F"	17qE4	chr17-15052617-87650787	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999476	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.334	58	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	5	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M3_p20	chr17	87679897	12A2p6	cell line	sgMsh2	87679897	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	538	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.T464A:p.V155D	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	1	0.336533014	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	87679899	12A2p6	cell line	sgMsh2	87679899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	540	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.G466A:p.D156N	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	1	0.398525938	3	0.9999759	TGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	87717667	12A2p6	cell line	sgMsh2	87717667	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	453	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon12:c.G1972A:p.E658K	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	1	0.327676882	3	1.00E-09	TGA	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr17	87720926	12A2p6	cell line	sgMsh2	87720926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	274	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon15:c.T2502C:p.A834A	17qE4	chr17-87672302-87723786	13.44029782	10.44029782	3	0.91	4.029540036	NA	2	0.451662729	2	0.9639607	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr17	88636058	12A2p6	cell line	sgMsh2	88636058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	116	0	0	NA	exonic	Ston1	synonymous SNV	Ston1:NM_029858:exon2:c.T891C:p.P297P	17qE4	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999358	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr17	88636398	12A2p6	cell line	sgMsh2	88636398	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	48	0	0	NA	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon2:c.T1231A:p.C411S	17qE4	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	2	1	1	0.9934993	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	88742385	12A2p6	cell line	sgMsh2	88742385	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.203	262	0	0	NA	exonic	Lhcgr	frameshift insertion	Lhcgr:NM_013582:exon11:c.1711dupA:p.I571Nfs*2	17qE4	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	1	0.898897393	NA	NA	AAT	frameshift	T	5	TTTTT	1
M3_p20	chr17	90037207	12A2p6	cell line	sgMsh2	90037207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	327	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.T290C:p.V97A,Nrxn1:NM_001347419:exon3:c.T299C:p.V100A,Nrxn1:NM_001346960:exon6:c.T1187C:p.V396A,Nrxn1:NM_001346961:exon6:c.T1178C:p.V393A,Nrxn1:NM_001346958:exon7:c.T1268C:p.V423A,Nrxn1:NM_001346959:exon7:c.T1277C:p.V426A,Nrxn1:NM_001346957:exon19:c.T4253C:p.V1418A,Nrxn1:NM_177284:exon21:c.T4358C:p.V1453A,Nrxn1:NM_020252:exon23:c.T4394C:p.V1465A"	17qE5	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	1	0.72620282	2	0.9987249	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	90162281	12A2p6	cell line	sgMsh2	90162281	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	222	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346960:exon4:c.G754A:p.V252M,Nrxn1:NM_001346961:exon4:c.G754A:p.V252M,Nrxn1:NM_001346958:exon5:c.G844A:p.V282M,Nrxn1:NM_001346959:exon5:c.G844A:p.V282M,Nrxn1:NM_001346957:exon17:c.G3820A:p.V1274M,Nrxn1:NM_177284:exon19:c.G3925A:p.V1309M,Nrxn1:NM_020252:exon21:c.G3961A:p.V1321M"	17qE5	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	2	1	1	4.86E-08	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr17	90630126	12A2p6	cell line	sgMsh2	90630126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	125	0	0	NA	exonic	Nrxn1	synonymous SNV	"Nrxn1:NM_001346957:exon8:c.T1878C:p.A626A,Nrxn1:NM_177284:exon8:c.T1866C:p.A622A,Nrxn1:NM_020252:exon10:c.T1902C:p.A634A"	17qE5	chr17-87745782-94740433	5	3	2	0.91	4.029540036	NA	1	0.854616733	1	0.9827249	GAG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
M3_p20	chr18	5766932	12A2p6	cell line	sgMsh2	5766932	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	46	0	0	NA	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.A1274C:p.N425T,Zeb1:NM_011546:exon6:c.A1442C:p.N481T,Zeb1:NM_001360981:exon7:c.A1391C:p.N464T"	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9925593	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	10510716	12A2p6	cell line	sgMsh2	10510716	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	171	0	0	NA	exonic	Greb1l	synonymous SNV	Greb1l:NM_001083628:exon13:c.G1809A:p.K603K	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999985	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr18	10515208	12A2p6	cell line	sgMsh2	10515208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	58	0	0	NA	exonic	Greb1l	nonsynonymous SNV	Greb1l:NM_001083628:exon15:c.A1999G:p.T667A	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.996696	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	221	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	5.19E-08	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	13015915	12A2p6	cell line	sgMsh2	13015915	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	578	0	0	NA	exonic	Hrh4	nonsynonymous SNV	Hrh4:NM_153087:exon2:c.T333G:p.D111E	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	1	ATC	nonsynonymous	CGAT	8	CGATCGAT	NA
M3_p20	chr18	16601669	12A2p6	cell line	sgMsh2	16601669	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	204	0	0	NA	exonic	Cdh2	synonymous SNV	Cdh2:NM_007664:exon15:c.C2467A:p.R823R	18qA1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	145	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999911	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	21148087	12A2p6	cell line	sgMsh2	21148087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	230	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1211G:p.H404R	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	0.309964618	3	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	22524051	12A2p6	cell line	sgMsh2	22524051	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	77	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.A5117T:p.N1706I	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9990902	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	22920873	12A2p6	cell line	sgMsh2	22920873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	182	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon4:c.T362C:p.I121T,Nol4:NM_001347509:exon4:c.T581C:p.I194T,Nol4:NM_001347510:exon4:c.T581C:p.I194T,Nol4:NM_199024:exon4:c.T581C:p.I194T,Nol4:NM_001361223:exon5:c.T116C:p.I39T,Nol4:NM_001361224:exon5:c.T116C:p.I39T,Nol4:NM_001361225:exon5:c.T116C:p.I39T"	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999993	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	225	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	3.98E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	24121713	12A2p6	cell line	sgMsh2	24121713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	14	0	0	NA	exonic	Ino80c	nonsynonymous SNV	Ino80c:NM_172625:exon1:c.A89G:p.N30S	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9378643	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	25056341	12A2p6	cell line	sgMsh2	25056342	AG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	71	0	0	NA	exonic	Fhod3	frameshift deletion	"Fhod3:NM_001289654:exon12:c.1386_1387del:p.E465Gfs*48,Fhod3:NM_001289655:exon13:c.1743_1744del:p.E584Gfs*48,Fhod3:NM_175276:exon14:c.1839_1840del:p.E616Gfs*48"	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	AAG	frameshift	AG	10	AGAGAGAGAG	-2
M3_p20	chr18	25112562	12A2p6	cell line	sgMsh2	25112562	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	93	0	0	NA	exonic	Fhod3	nonsynonymous SNV	"Fhod3:NM_001289654:exon19:c.T3215G:p.L1072R,Fhod3:NM_001289655:exon20:c.T3572G:p.L1191R,Fhod3:NM_175276:exon21:c.T3668G:p.L1223R"	18qA2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996933	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	31896740	12A2p6	cell line	sgMsh2	31896740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	101	0	0	NA	exonic	Wdr33	synonymous SNV	Wdr33:NM_028866:exon18:c.T2991C:p.R997R	18qB1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.999822	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr18	33876985	12A2p6	cell line	sgMsh2	33876985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	89	0	0	NA	exonic	Epb41l4a	nonsynonymous SNV	Epb41l4a:NM_013512:exon8:c.C566A:p.P189H	18qB1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995975	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	34448073	12A2p6	cell line	sgMsh2	34448073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	95	0	0	NA	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon17:c.A2035G:p.R679G	18qB1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997323	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	52	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9950397	TAC	synonymous	T	5	TTTTT	NA
M3_p20	chr18	36529735	12A2p6	cell line	sgMsh2	36529735	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	213	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_001271544:exon4:c.A542T:p.K181M,Slc4a9:NM_001271545:exon4:c.A542T:p.K181M,Slc4a9:NM_001271546:exon4:c.A542T:p.K181M,Slc4a9:NM_001271547:exon4:c.A542T:p.K181M,Slc4a9:NM_172830:exon4:c.A542T:p.K181M"	18qB2	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37344002	12A2p6	cell line	sgMsh2	37344002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	206	0	0	NA	exonic	Pcdhb7	synonymous SNV	Pcdhb7:NM_053132:exon1:c.A2190G:p.V730V	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr18	37355814	12A2p6	cell line	sgMsh2	37355814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.634	105	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.A544G:p.T182A	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	1	0.9998644	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37357271	12A2p6	cell line	sgMsh2	37357271	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	423	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.G2001T:p.Q667H	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37421758	12A2p6	cell line	sgMsh2	37421758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	175	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.A140G:p.N47S	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999988	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37485357	12A2p6	cell line	sgMsh2	37485357	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	53	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.A199G:p.I67V	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9953643	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37515443	12A2p6	cell line	sgMsh2	37515443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	303	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1624G:p.S542G	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	1.19E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37676455	12A2p6	cell line	sgMsh2	37676455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	81	0	0	NA	exonic	Pcdhga3	nonsynonymous SNV	Pcdhga3:NM_033586:exon1:c.A1960G:p.T654A	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993067	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.624	191	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999996	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	37756153	12A2p6	cell line	sgMsh2	37756153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	124	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A213G:p.Q71Q	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999627	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr18	37816197	12A2p6	cell line	sgMsh2	37816197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	60	0	0	NA	exonic	Pcdhgc4	nonsynonymous SNV	Pcdhgc4:NM_033582:exon1:c.A665G:p.N222S	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9971149	AAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr18	37820769	12A2p6	cell line	sgMsh2	37820769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	138	0	0	NA	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1095G:p.V365V	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999856	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr18	41986686	12A2p6	cell line	sgMsh2	41986686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	62	0	0	NA	exonic	Grxcr2	synonymous SNV	Grxcr2:NM_001033426:exon3:c.T588C:p.D196D	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9974809	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr18	43781252	12A2p6	cell line	sgMsh2	43781252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	103	0	0	NA	exonic	Gm94	synonymous SNV	Gm94:NM_001033280:exon3:c.T240C:p.L80L	18qB3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998446	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr18	46905292	12A2p6	cell line	sgMsh2	46905292	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	200	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon20:c.C2912T:p.T971M	18qC	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	47248675	12A2p6	cell line	sgMsh2	47248675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	55	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.T2639C:p.L880P,Sema6a:NM_018744:exon19:c.T2804C:p.L935P"	18qC	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9959514	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	52520854	12A2p6	cell line	sgMsh2	52520854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	282	0	0	NA	exonic	Lox	nonsynonymous SNV	"Lox:NM_010728:exon6:c.T1169C:p.V390A,Lox:NM_001286181:exon7:c.T1169C:p.V390A,Lox:NM_001286182:exon7:c.T1169C:p.V390A"	18qD1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	1.80E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	56749782	12A2p6	cell line	sgMsh2	56749782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	35	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon10:c.T1698C:p.A566A	18qD3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9844086	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr18	60391010	12A2p6	cell line	sgMsh2	60391010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	35	0	0	NA	exonic	Iigp1	nonsynonymous SNV	"Iigp1:NM_001146275:exon3:c.A1199G:p.E400G,Iigp1:NM_021792:exon3:c.A1199G:p.E400G"	18qD3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9844086	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	61081937	12A2p6	cell line	sgMsh2	61081937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	117	0	0	NA	exonic	Pdgfrb	nonsynonymous SNV	"Pdgfrb:NM_001146268:exon22:c.T3025C:p.Y1009H,Pdgfrb:NM_008809:exon22:c.T3022C:p.Y1008H"	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.99994	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	61140942	12A2p6	cell line	sgMsh2	61140942	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	81	0	0	NA	exonic	Hmgxb3	nonsynonymous SNV	"Hmgxb3:NM_178277:exon15:c.T2573A:p.L858Q,Hmgxb3:NM_134134:exon16:c.T2477A:p.L826Q"	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993067	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	63926639	12A2p6	cell line	sgMsh2	63926639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	92	0	0	NA	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon23:c.A3793G:p.T1265A,Wdr7:NM_001014981:exon24:c.A3889G:p.T1297A"	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996717	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M3_p20	chr18	65451559	12A2p6	cell line	sgMsh2	65451559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	58	0	0	NA	exonic	Malt1	nonsynonymous SNV	"Malt1:NM_172833:exon7:c.A965G:p.N322S,Malt1:NM_001365019:exon8:c.A998G:p.N333S"	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.996696	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	67310692	12A2p6	cell line	sgMsh2	67310692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	37	0	0	NA	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon5:c.A433T:p.T145S	18qE1	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9863641	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	76145787	12A2p6	cell line	sgMsh2	76145787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	92	0	0	NA	exonic	Zbtb7c	nonsynonymous SNV	"Zbtb7c:NM_001357506:exon3:c.A1315G:p.M439V,Zbtb7c:NM_145356:exon5:c.A1315G:p.M439V"	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996717	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	76302457	12A2p6	cell line	sgMsh2	76302457	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	158	0	0	NA	exonic	Smad2	nonsynonymous SNV	"Smad2:NM_001311070:exon8:c.G1120T:p.A374S,Smad2:NM_001252481:exon10:c.G1210T:p.A404S,Smad2:NM_010754:exon10:c.G1210T:p.A404S"	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999963	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	79086842	12A2p6	cell line	sgMsh2	79086842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	73	0	0	NA	exonic	Setbp1	synonymous SNV	Setbp1:NM_053099:exon2:c.A174G:p.S58S	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9988061	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr18	80130301	12A2p6	cell line	sgMsh2	80130301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	53	0	0	NA	exonic	Adnp2	stopgain	Adnp2:NM_175028:exon4:c.C892T:p.Q298X	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9953643	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	80971684	12A2p6	cell line	sgMsh2	80971684	T	-	Deletion	Strelka2;Vardict	2	0.413	46	0	0	NA	exonic	Sall3	frameshift deletion	Sall3:NM_001369133:exon2:c.3028delA:p.S1010Vfs*30	18qE3	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr18	84561870	12A2p6	cell line	sgMsh2	84561870	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	190	0	0	NA	exonic	Zfp407	nonsynonymous SNV	Zfp407:NM_001033341:exon2:c.C1117A:p.L373I	18qE4	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	139	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999866	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	3362184	12A2p6	cell line	sgMsh2	3362184	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	217	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon6:c.T655A:p.W219R	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	377	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	200	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	3659246	12A2p6	cell line	sgMsh2	3659246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	104	0	0	NA	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon2:c.T483C:p.H161H	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr19	3715733	12A2p6	cell line	sgMsh2	3715733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	406	0	0	NA	exonic	1810055G02Rik	nonsynonymous SNV	"1810055G02Rik:NM_001358256:exon3:c.A7G:p.T3A,1810055G02Rik:NM_001358257:exon3:c.A7G:p.T3A,1810055G02Rik:NM_001358258:exon3:c.A7G:p.T3A,1810055G02Rik:NM_028077:exon3:c.A7G:p.T3A"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	4290661	12A2p6	cell line	sgMsh2	4290661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	205	0	0	NA	exonic	Grk2	nonsynonymous SNV	"Grk2:NM_001290818:exon10:c.A769G:p.M257V,Grk2:NM_130863:exon11:c.A643G:p.M215V"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	4450969	12A2p6	cell line	sgMsh2	4450969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	294	0	0	NA	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1052G:p.N351S	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.702	69	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	190	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5026399	12A2p6	cell line	sgMsh2	5026399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	148	0	0	NA	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon4:c.T314C:p.I105T	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5480730	12A2p6	cell line	sgMsh2	5480730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	201	0	0	NA	exonic	Efemp2	nonsynonymous SNV	"Efemp2:NM_001164352:exon9:c.T1216G:p.F406V,Efemp2:NM_001374680:exon10:c.T1195G:p.F399V,Efemp2:NM_021474:exon10:c.T1159G:p.F387V"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5655735	12A2p6	cell line	sgMsh2	5655735	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	694	0	0	NA	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon6:c.T1204C:p.F402L,Sipa1:NM_001164568:exon6:c.T1204C:p.F402L,Sipa1:NM_001164480:exon7:c.T1204C:p.F402L,Sipa1:NM_011379:exon7:c.T1204C:p.F402L,Sipa1:NM_001164481:exon8:c.T1204C:p.F402L"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	222	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	139	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5770402	12A2p6	cell line	sgMsh2	5770402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	195	0	0	NA	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon3:c.T403C:p.C135R,Scyl1:NM_001361922:exon3:c.T403C:p.C135R,Scyl1:NM_023912:exon3:c.T403C:p.C135R"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	5884465	12A2p6	cell line	sgMsh2	5884465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	73	0	0	NA	exonic	Slc25a45	nonsynonymous SNV	"Slc25a45:NM_001361974:exon5:c.A286G:p.I96V,Slc25a45:NM_134154:exon5:c.A460G:p.I154V,Slc25a45:NM_001361973:exon6:c.A460G:p.I154V"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	6011343	12A2p6	cell line	sgMsh2	6011343	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	143	0	0	NA	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon5:c.C544A:p.Q182K,Capn1:NM_007600:exon5:c.C544A:p.Q182K"	19qA	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	6062383	12A2p6	cell line	sgMsh2	6062383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	85	0	0	NA	exonic	Znhit2	nonsynonymous SNV	Znhit2:NM_013859:exon1:c.T1157C:p.V386A	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.544652115	2	0.9950124	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	32	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.894469327	1	0.9418392	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	6831858	12A2p6	cell line	sgMsh2	6831858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	165	0	0	NA	exonic	Rps6ka4	synonymous SNV	Rps6ka4:NM_019924:exon12:c.G1338A:p.L446L	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.766055413	2	0.5586156	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	88	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.633213434	2	0.9646041	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	7782147	12A2p6	cell line	sgMsh2	7782147	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	210	0	0	NA	exonic	Slc22a26	frameshift deletion	Slc22a26:NM_146232:exon10:c.1622delA:p.K541Rfs*8	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.805908007	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr19	8945845	12A2p6	cell line	sgMsh2	8945845	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	145	0	0	NA	exonic	Mta2	frameshift deletion	Mta2:NM_011842:exon4:c.280delT:p.F94Lfs*8	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.721774754	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr19	9016193	12A2p6	cell line	sgMsh2	9016193	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	216	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14840T:p.N4947I	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.597788906	2	0.9999983	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.185	38	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.819192205	1	0.8803779	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr19	10218466	12A2p6	cell line	sgMsh2	10218466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	146	0	0	NA	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon12:c.G1789A:p.E597K	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.943178052	1	0.9998569	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	10444168	12A2p6	cell line	sgMsh2	10444168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	160	0	0	NA	exonic	Syt7	nonsynonymous SNV	"Syt7:NM_018801:exon8:c.A1091G:p.N364S,Syt7:NM_173067:exon9:c.A1223G:p.N408S,Syt7:NM_173068:exon10:c.A1583G:p.N528S,Syt7:NM_001373944:exon11:c.A1715G:p.N572S"	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.850188667	1	0.9882909	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	263	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.805908007	1	0.8971449	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	222	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.619929236	2	0.9999941	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr19	11251812	12A2p6	cell line	sgMsh2	11251812	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	285	0	0	NA	exonic	Ms4a1	synonymous SNV	Ms4a1:NM_007641:exon7:c.A729C:p.L243L	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.500371455	2	0.9999819	TTA	synonymous	NA	NA	NA	NA
M3_p20	chr19	11283759	12A2p6	cell line	sgMsh2	11283759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	595	0	0	NA	exonic	Ms4a5	nonsynonymous SNV	Ms4a5:NM_183190:exon1:c.T35C:p.L12P	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.597788906	2	1	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	12088088	12A2p6	cell line	sgMsh2	12088088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	880	0	0	NA	exonic	Olfr1426	nonsynonymous SNV	Olfr1426:NM_146809:exon3:c.A703G:p.I235V	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.597788906	2	1	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	12209969	12A2p6	cell line	sgMsh2	12209969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	1580	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.A402G:p.S134S	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.655353764	2	1	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr19	12954046	12A2p6	cell line	sgMsh2	12954046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	543	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T456C:p.S152S	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.743915084	2	0.9998686	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr19	12999847	12A2p6	cell line	sgMsh2	12999847	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	318	0	0	NA	exonic	Olfr1451	nonsynonymous SNV	Olfr1451:NM_146705:exon1:c.T860G:p.V287G	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.916609657	1	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13234706	12A2p6	cell line	sgMsh2	13234706	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	526	0	0	NA	exonic	Olfr1463	nonsynonymous SNV	Olfr1463:NM_001011840:exon1:c.T455G:p.L152R	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.611073104	2	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13364669	12A2p6	cell line	sgMsh2	13364669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	276	0	0	NA	exonic	Olfr1467	synonymous SNV	Olfr1467:NM_146691:exon1:c.C40T:p.L14L	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.575648577	2	4.13E-09	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr19	13364760	12A2p6	cell line	sgMsh2	13364760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	286	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T131C:p.M44T	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.97860258	1	5.98E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13454083	12A2p6	cell line	sgMsh2	13454083	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	771	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.T433C:p.C145R	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.602216972	2	1	CAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M3_p20	chr19	13502626	12A2p6	cell line	sgMsh2	13502626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	1373	0	0	NA	exonic	Olfr1477	synonymous SNV	Olfr1477:NM_146696:exon2:c.T282C:p.N94N	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.619929236	2	1	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr19	13585935	12A2p6	cell line	sgMsh2	13585935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	797	0	0	NA	exonic	Olfr1484	synonymous SNV	Olfr1484:NM_146291:exon1:c.A630G:p.L210L	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.68192216	2	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr19	13586101	12A2p6	cell line	sgMsh2	13586101	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	1500	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.T796A:p.S266T	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.673066028	2	1	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13654758	12A2p6	cell line	sgMsh2	13654758	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.137	735	0	0	NA	exonic	Olfr1490	frameshift insertion	Olfr1490:NM_001011832:exon1:c.314dupT:p.G106Wfs*3	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.606645038	NA	NA	CAT	frameshift	NA	NA	NA	1
M3_p20	chr19	13654771	12A2p6	cell line	sgMsh2	13654771	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	736	0	0	NA	exonic	Olfr1490	nonsynonymous SNV	Olfr1490:NM_001011832:exon1:c.G326T:p.S109I	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.730630886	2	0.9999999	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13705156	12A2p6	cell line	sgMsh2	13705156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	615	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A328G:p.T110A	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.730630886	2	0.9999981	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13861984	12A2p6	cell line	sgMsh2	13861984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	722	0	0	NA	exonic	Olfr1502	nonsynonymous SNV	Olfr1502:NM_146797:exon1:c.A190G:p.S64G	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.65978183	2	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	13919023	12A2p6	cell line	sgMsh2	13919023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	632	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.T2G:p.M1R	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.518083719	2	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	355	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1.01E-09	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	529	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.677494094	2	2.03E-09	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr19	17330062	12A2p6	cell line	sgMsh2	17330062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	179	0	0	NA	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.T298C:p.C100R,Gcnt1:NM_010265:exon3:c.T298C:p.C100R,Gcnt1:NM_173442:exon3:c.T298C:p.C100R"	19qB	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.664209896	2	0.9987067	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	21428623	12A2p6	cell line	sgMsh2	21428623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	exonic	Gda	synonymous SNV	Gda:NM_010266:exon3:c.T240C:p.D80D	19qB	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.960890316	1	0.9999619	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr19	21815516	12A2p6	cell line	sgMsh2	21815516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	169	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon11:c.C2135T:p.P712L,Cemip2:NM_031997:exon12:c.C2135T:p.P712L"	19qB	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.61550117	2	0.9998764	CCG	nonsynonymous	ACTC	8	ACTCACTC	NA
M3_p20	chr19	23263665	12A2p6	cell line	sgMsh2	23263665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	183	0	0	NA	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252684:exon4:c.T482C:p.V161A,Smc5:NM_001252685:exon4:c.T254C:p.V85A,Smc5:NM_153808:exon4:c.T482C:p.V161A"	19qB	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.717346688	2	0.97088	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	26649132	12A2p6	cell line	sgMsh2	26649132	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.175	61	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1355G:p.E452G	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.774911545	1	0.7704113	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	26649134	12A2p6	cell line	sgMsh2	26649134	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.175	61	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.A1357G:p.R453G	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.774911545	1	0.7704113	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	396	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr19	28905451	12A2p6	cell line	sgMsh2	28905451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	406	0	0	NA	exonic	Slc1a1	nonsynonymous SNV	Slc1a1:NM_009199:exon10:c.T1114A:p.Y372N	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	29602644	12A2p6	cell line	sgMsh2	29602644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	494	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon25:c.A3844G:p.I1282V	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.602216972	2	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	29700162	12A2p6	cell line	sgMsh2	29700162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	375	0	0	NA	exonic	Mlana	synonymous SNV	Mlana:NM_029993:exon2:c.T63C:p.T21T	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.916609657	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr19	30116427	12A2p6	cell line	sgMsh2	30116427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	282	0	0	NA	exonic	Gldc	nonsynonymous SNV	Gldc:NM_138595:exon18:c.A2189G:p.Y730C	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.562364379	2	2.46E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	30585291	12A2p6	cell line	sgMsh2	30585291	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	140	0	0	NA	exonic	Prkg1	synonymous SNV	"Prkg1:NM_001013833:exon14:c.C1512T:p.G504G,Prkg1:NM_011160:exon14:c.C1557T:p.G519G"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.354245278	3	0.99336	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr19	31917996	12A2p6	cell line	sgMsh2	31917996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	247	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.A478C:p.T160P,A1cf:NM_001365078:exon5:c.A478C:p.T160P"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.522511785	2	0.9999968	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	31920923	12A2p6	cell line	sgMsh2	31920923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	697	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon6:c.A706G:p.R236G,A1cf:NM_001365078:exon6:c.A706G:p.R236G"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.695206358	2	1.06E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	33964871	12A2p6	cell line	sgMsh2	33964871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	271	0	0	NA	exonic	Lipf	nonsynonymous SNV	Lipf:NM_026334:exon3:c.A200G:p.K67R	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.571220511	2	4.06E-09	AAG	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr19	34495079	12A2p6	cell line	sgMsh2	34495079	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	86	0	0	NA	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon9:c.A941T:p.N314I,Lipa:NM_021460:exon9:c.A941T:p.N314I"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	0.9995064	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	34573176	12A2p6	cell line	sgMsh2	34573176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	553	0	0	NA	exonic	Ifit2	nonsynonymous SNV	"Ifit2:NM_001355262:exon3:c.T115C:p.F39L,Ifit2:NM_008332:exon3:c.T115C:p.F39L"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.677494094	2	1.37E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Vardict	2	0.149	207	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.65978183	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M3_p20	chr19	34588266	12A2p6	cell line	sgMsh2	34588266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	382	0	0	NA	exonic	Ifit3	stoploss	Ifit3:NM_010501:exon2:c.A1211G:p.X404W	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.265683958	3	1.00E-09	TAG	nonsynonymous	AGCA	8	AGCAAGCA	NA
M3_p20	chr19	34594484	12A2p6	cell line	sgMsh2	34594484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	1435	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.A572G:p.Y191C,Ifit1bl1:NM_001110517:exon2:c.A572G:p.Y191C"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.513655653	2	1	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	34594605	12A2p6	cell line	sgMsh2	34594605	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	1230	0	0	NA	exonic	Ifit1bl1	nonsynonymous SNV	"Ifit1bl1:NM_001101605:exon2:c.G451T:p.G151C,Ifit1bl1:NM_001110517:exon2:c.G451T:p.G151C"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.487087257	2	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	34620037	12A2p6	cell line	sgMsh2	34620037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	397	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.A178G:p.I60V,Ifit1bl2:NM_053217:exon3:c.A178G:p.I60V"	19qC1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	38400469	12A2p6	cell line	sgMsh2	38400469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	178	0	0	NA	exonic	Slc35g1	nonsynonymous SNV	Slc35g1:NM_175507:exon2:c.T223A:p.L75M	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	38701977	12A2p6	cell line	sgMsh2	38701977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	142	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon5:c.T2104C:p.F702L	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.553508247	2	0.9999331	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	337	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1.02E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	38719591	12A2p6	cell line	sgMsh2	38719591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	333	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3123A:p.H1041Q	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.72620282	2	0.9989074	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	38945419	12A2p6	cell line	sgMsh2	38945419	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	755	0	0	NA	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon9:c.T683G:p.I228S	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	39093485	12A2p6	cell line	sgMsh2	39093485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	427	0	0	NA	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon9:c.T1454C:p.I485T	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.863472865	1	0.9999803	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	40585490	12A2p6	cell line	sgMsh2	40585490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	612	0	0	NA	exonic	Aldh18a1	nonsynonymous SNV	"Aldh18a1:NM_019698:exon3:c.A88C:p.N30H,Aldh18a1:NM_153554:exon3:c.A88C:p.N30H"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.72620282	2	0.9999992	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	40962445	12A2p6	cell line	sgMsh2	40962445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	190	0	0	NA	exonic	Blnk	synonymous SNV	"Blnk:NM_001365054:exon5:c.T261C:p.P87P,Blnk:NM_008528:exon5:c.T261C:p.P87P"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.522511785	2	0.999958	CAG	synonymous	GGCA	8	GGCAGGCA	NA
M3_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	350	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.735058952	2	0.9979639	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr19	41928081	12A2p6	cell line	sgMsh2	41928081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	520	0	0	NA	exonic	Exosc1	synonymous SNV	"Exosc1:NM_001320231:exon4:c.A255G:p.V85V,Exosc1:NM_001320232:exon4:c.A255G:p.V85V,Exosc1:NM_025644:exon4:c.A255G:p.V85V"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.619929236	2	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr19	42767181	12A2p6	cell line	sgMsh2	42767181	C	-	Deletion	Mutect2;Vardict	2	0.094	149	0	0	NA	exonic	Hps1	frameshift deletion	"Hps1:NM_001362410:exon6:c.605delG:p.G202Afs*159,Hps1:NM_001346703:exon7:c.605delG:p.G202Afs*167,Hps1:NM_019424:exon7:c.605delG:p.G202Afs*159"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.416238202	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr19	45006330	12A2p6	cell line	sgMsh2	45006330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	23	0	0	NA	exonic	Mrpl43	nonsynonymous SNV	Mrpl43:NM_053164:exon1:c.A65G:p.Y22C	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	1	1	0.9654147	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	120	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.38524174	3	0.8858142	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	45796295	12A2p6	cell line	sgMsh2	45796295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	18	0	0	NA	exonic	Kcnip2	synonymous SNV	Kcnip2:NM_145703:exon3:c.C207T:p.P69P	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	3	1	1	0.9520486	GGG	synonymous	GCGG	9	GCGGGCGGG	NA
M3_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.469374993	2	0.9355032	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	46005998	12A2p6	cell line	sgMsh2	46005998	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	165	0	0	NA	exonic	Hps6	synonymous SNV	Hps6:NM_176785:exon1:c.A2373G:p.P791P	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.717346688	2	0.9520387	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr19	46076046	12A2p6	cell line	sgMsh2	46076046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	137	0	0	NA	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon1:c.T17C:p.L6S,Nolc1:NM_001039352:exon1:c.T17C:p.L6S,Nolc1:NM_001039353:exon1:c.T17C:p.L6S,Nolc1:NM_053086:exon1:c.T17C:p.L6S"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.712918622	2	0.9160098	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	78	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.65978183	2	0.8828302	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	46330185	12A2p6	cell line	sgMsh2	46330185	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	159	0	0	NA	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T905G:p.L302W,Fbxl15:NM_133694:exon4:c.T797G:p.L266W"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.633213434	2	0.9993873	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	46898645	12A2p6	cell line	sgMsh2	46898645	A	-	Deletion	Mutect2;Vardict	2	0.156	145	0	0	NA	exonic	Nt5c2	frameshift deletion	"Nt5c2:NM_001377070:exon6:c.429delT:p.F143Lfs*29,Nt5c2:NM_001164363:exon7:c.594delT:p.F198Lfs*29,Nt5c2:NM_001164365:exon7:c.591delT:p.F197Lfs*29,Nt5c2:NM_001377066:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_001377068:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_001377069:exon7:c.516delT:p.F172Lfs*29,Nt5c2:NM_029810:exon7:c.516delT:p.F172Lfs*29"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.690778292	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr19	46924301	12A2p6	cell line	sgMsh2	46924301	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	197	0	0	NA	exonic	Nt5c2	stopgain	"Nt5c2:NM_001377070:exon2:c.49delA:p.I17fs*0,Nt5c2:NM_001164363:exon3:c.214delA:p.I72fs*0,Nt5c2:NM_001164365:exon3:c.211delA:p.I71fs*0,Nt5c2:NM_001377066:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_001377068:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_001377069:exon3:c.136delA:p.I46fs*0,Nt5c2:NM_029810:exon3:c.136delA:p.I46fs*0"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.788195743	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M3_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	397	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	2	0.828048337	1	0.9954155	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	47075043	12A2p6	cell line	sgMsh2	47075043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	461	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon3:c.A1031G:p.D344G	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.690778292	2	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	142	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.668637962	2	0.9909379	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	428	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.752771216	2	0.9953774	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	47615216	12A2p6	cell line	sgMsh2	47615216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	611	0	0	NA	exonic	Slk	frameshift deletion	"Slk:NM_001164639:exon5:c.535delA:p.N180Ifs*21,Slk:NM_009289:exon5:c.535delA:p.N180Ifs*21"	19qD1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.761627348	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr19	47622617	12A2p6	cell line	sgMsh2	47622617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	75	0	0	NA	exonic	Slk	stopgain	"Slk:NM_001164639:exon11:c.C2521T:p.R841X,Slk:NM_009289:exon11:c.C2521T:p.R841X"	19qD1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.735058952	1	6.12E-07	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	48487395	12A2p6	cell line	sgMsh2	48487395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	268	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon3:c.T692C:p.V231A	19qD1	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.491515323	2	0.9998846	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	52264871	12A2p6	cell line	sgMsh2	52264871	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	109	0	0	NA	exonic	Ins1	nonsynonymous SNV	Ins1:NM_008386:exon2:c.C248T:p.A83V	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.797051875	1	0.8321189	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	242	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.491515323	2	0.9997601	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	55623900	12A2p6	cell line	sgMsh2	55623900	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	483	0	0	NA	exonic	Vti1a	nonsynonymous SNV	"Vti1a:NM_016862:exon8:c.A644C:p.K215T,Vti1a:NM_001293685:exon9:c.A665C:p.K222T"	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.584504709	2	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	56327234	12A2p6	cell line	sgMsh2	56327234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	222	0	0	NA	exonic	Nrap	synonymous SNV	"Nrap:NM_001286552:exon36:c.T4140C:p.D1380D,Nrap:NM_198059:exon37:c.T4383C:p.D1461D,Nrap:NM_008733:exon38:c.T4488C:p.D1496D"	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.712918622	2	0.9930844	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr19	56848901	12A2p6	cell line	sgMsh2	56848901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	386	0	0	NA	exonic	Tdrd1	nonsynonymous SNV	"Tdrd1:NM_001002241:exon12:c.A1556G:p.Q519R,Tdrd1:NM_001002238:exon13:c.A1556G:p.Q519R,Tdrd1:NM_001002240:exon13:c.A1556G:p.Q519R,Tdrd1:NM_031387:exon13:c.A1556G:p.Q519R"	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.699634424	2	0.9999917	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	289	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.571220511	2	1.74E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	58805445	12A2p6	cell line	sgMsh2	58805445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	269	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon9:c.T983C:p.I328T,Hspa12a:NM_001327998:exon10:c.T1037C:p.I346T"	19qD2	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.367529476	3	0.9998857	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	60543015	12A2p6	cell line	sgMsh2	60543015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	551	0	0	NA	exonic	Cacul1	nonsynonymous SNV	"Cacul1:NM_001172096:exon5:c.T815C:p.L272P,Cacul1:NM_001172097:exon5:c.T815C:p.L272P,Cacul1:NM_030197:exon5:c.T815C:p.L272P"	19qD3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.757199282	2	0.9986247	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr19	61227332	12A2p6	cell line	sgMsh2	61227332	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	137	0	0	NA	exonic	Csf2ra	frameshift deletion	Csf2ra:NM_009970:exon2:c.34delC:p.L12Wfs*32	19qD3	chr19-6054831-61227351	7	5	2	0.91	4.029540036	NA	1	0.712918622	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	141	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999883	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	3502535	12A2p6	cell line	sgMsh2	3502535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	132	0	0	NA	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon4:c.A194T:p.N65I,Hspa14:NM_015765:exon5:c.A335T:p.N112I"	2qA1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999784	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	6408951	12A2p6	cell line	sgMsh2	6408951	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	220	0	0	NA	exonic	Usp6nl	nonsynonymous SNV	"Usp6nl:NM_181399:exon5:c.G287T:p.R96M,Usp6nl:NM_001080548:exon6:c.G218T:p.R73M"	2qA1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.309964618	3	0.9999992	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	9952272	12A2p6	cell line	sgMsh2	9952272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	179	0	0	NA	exonic	Taf3	synonymous SNV	Taf3:NM_027748:exon3:c.A1083G:p.K361K	2qA1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999991	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr2	13388963	12A2p6	cell line	sgMsh2	13388963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	135	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon29:c.A4226G:p.N1409S	2qA1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999824	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	172	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999986	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	22623830	12A2p6	cell line	sgMsh2	22623830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	47	0	0	NA	exonic	Gad2	nonsynonymous SNV	Gad2:NM_008078:exon3:c.A278G:p.H93R	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	23399952	12A2p6	cell line	sgMsh2	23399952	-	A	Insertion	Mutect2;Vardict	2	0.168	52	0	0	NA	exonic	Nxph2	frameshift insertion	Nxph2:NM_008752:exon2:c.316dupA:p.M108Nfs*4	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.743915084	NA	NA	TTA	frameshift	A	5	AAAAA	1
M3_p20	chr2	24758304	12A2p6	cell line	sgMsh2	24758304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	129	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon3:c.G508A:p.D170N,Cacna1b:NM_007579:exon3:c.G508A:p.D170N"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999735	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9993067	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	36	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9854186	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	25438838	12A2p6	cell line	sgMsh2	25438838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	36	0	0	NA	exonic	Abca2	synonymous SNV	"Abca2:NM_001368624:exon19:c.A2793G:p.L931L,Abca2:NM_007379:exon19:c.A2790G:p.L930L"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9854186	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr2	25493787	12A2p6	cell line	sgMsh2	25493787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	71	0	0	NA	exonic	Lcn12	nonsynonymous SNV	Lcn12:NM_029958:exon1:c.A70G:p.M24V	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9390552	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	25706992	12A2p6	cell line	sgMsh2	25706992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	Bmyc	nonsynonymous SNV	Bmyc:NM_023326:exon1:c.T67C:p.F23L	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9943212	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	25939739	12A2p6	cell line	sgMsh2	25939739	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	240	0	0	NA	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T1972G:p.F658V,Camsap1:NM_001276360:exon12:c.T2005G:p.F669V,Camsap1:NM_001276361:exon12:c.T2032G:p.F678V,Camsap1:NM_001372499:exon12:c.T2005G:p.F669V"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.50E-08	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	26435966	12A2p6	cell line	sgMsh2	26435966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	208	0	0	NA	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.A3698C:p.E1233A	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CTC	nonsynonymous	GCTCAG	12	GCTCAGGCTCAG	NA
M3_p20	chr2	26935351	12A2p6	cell line	sgMsh2	26935351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	106	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379463:exon2:c.A53G:p.N18S,Stkld1:NM_001379464:exon2:c.A53G:p.N18S,Stkld1:NM_198628:exon2:c.A29G:p.N10S"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998733	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	26983866	12A2p6	cell line	sgMsh2	26983866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	45	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon10:c.T1126A:p.C376S,Adamts13:NM_001290463:exon10:c.T1126A:p.C376S,Adamts13:NM_001290464:exon10:c.T1126A:p.C376S,Adamts13:NM_001290465:exon10:c.T1126A:p.C376S"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9920399	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	138	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999856	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	29146137	12A2p6	cell line	sgMsh2	29146137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	366	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon10:c.T2633C:p.L878P	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	29179716	12A2p6	cell line	sgMsh2	29179716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	176	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon26:c.T7532C:p.L2511P	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999989	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	29689110	12A2p6	cell line	sgMsh2	29689110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	145	0	0	NA	exonic	Rapgef1	synonymous SNV	"Rapgef1:NM_001039086:exon4:c.A381G:p.S127S,Rapgef1:NM_001362702:exon4:c.A381G:p.S127S,Rapgef1:NM_001039087:exon5:c.A495G:p.S165S,Rapgef1:NM_054050:exon5:c.A495G:p.S165S"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999911	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	76	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990262	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	30376735	12A2p6	cell line	sgMsh2	30376735	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	140	0	0	NA	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon8:c.T883G:p.S295A,Miga2:NM_001378906:exon8:c.T883G:p.S295A,Miga2:NM_001378907:exon8:c.T883G:p.S295A,Miga2:NM_001378909:exon8:c.T310G:p.S104A,Miga2:NM_001378911:exon8:c.T310G:p.S104A,Miga2:NM_175392:exon8:c.T883G:p.S295A"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999874	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	31912023	12A2p6	cell line	sgMsh2	31912023	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	101	0	0	NA	exonic	Lamc3	nonsynonymous SNV	Lamc3:NM_011836:exon8:c.A1442T:p.H481L	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.491515323	2	0.9873159	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32096059	12A2p6	cell line	sgMsh2	32096059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	24	0	0	NA	exonic	Plpp7	nonsynonymous SNV	"Plpp7:NM_001355238:exon1:c.A248G:p.N83S,Plpp7:NM_145521:exon1:c.A248G:p.N83S"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9676163	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32194495	12A2p6	cell line	sgMsh2	32194495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	213	0	0	NA	exonic	Prrc2b	nonsynonymous SNV	"Prrc2b:NM_001159634:exon8:c.A971G:p.Q324R,Prrc2b:NM_172661:exon8:c.A971G:p.Q324R"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.668637962	2	0.9996384	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	255	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.72620282	2	0.9918985	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.6	6	0	0	NA	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.8946281	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32578965	12A2p6	cell line	sgMsh2	32578965	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	202	0	0	NA	exonic	Pip5kl1	frameshift deletion	"Pip5kl1:NM_001379020:exon6:c.721delA:p.K242Rfs*27,Pip5kl1:NM_001379021:exon6:c.430delA:p.K145Rfs*27,Pip5kl1:NM_198191:exon6:c.595delA:p.K200Rfs*27"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr2	32708204	12A2p6	cell line	sgMsh2	32708204	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	218	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon7:c.A839T:p.K280M	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.27454009	3	1.46E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	84	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994345	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	117	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.99994	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	36859777	12A2p6	cell line	sgMsh2	36859777	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	347	0	0	NA	exonic	Olfr351	synonymous SNV	Olfr351:NM_146942:exon1:c.T570A:p.T190T	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.01E-09	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	36996936	12A2p6	cell line	sgMsh2	36996936	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.166	218	0	0	NA	exonic	Olfr357	frameshift insertion	Olfr357:NM_146623:exon1:c.126dupT:p.I45Yfs*20	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.735058952	NA	NA	AAT	frameshift	T	5	TTTTT	1
M3_p20	chr2	37085433	12A2p6	cell line	sgMsh2	37085433	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	409	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T314G:p.M105R	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	37202003	12A2p6	cell line	sgMsh2	37202003	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.251	515	0	0	NA	exonic	Olfr365	frameshift insertion	Olfr365:NM_146662:exon1:c.762dupT:p.G255Wfs*7	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	1
M3_p20	chr2	37414545	12A2p6	cell line	sgMsh2	37414545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	126	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon3:c.T202C:p.F68L,Rc3h2:NM_001290642:exon3:c.T202C:p.F68L"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	38947312	12A2p6	cell line	sgMsh2	38947312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	100	0	0	NA	exonic	Olfml2a	nonsynonymous SNV	Olfml2a:NM_172854:exon3:c.A466G:p.T156A	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998094	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	40801423	12A2p6	cell line	sgMsh2	40801423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	139	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon66:c.C10383T:p.D3461D	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999866	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr2	41123015	12A2p6	cell line	sgMsh2	41123015	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	121	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon37:c.T5919G:p.G1973G	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.301108486	3	0.9995122	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr2	41435587	12A2p6	cell line	sgMsh2	41435587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	131	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon18:c.C2817T:p.C939C	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.7254113	TGC	synonymous	NA	NA	NA	NA
M3_p20	chr2	41471003	12A2p6	cell line	sgMsh2	41471003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	133	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon13:c.A2129G:p.Y710C	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9944878	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.516	54	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr2	43589396	12A2p6	cell line	sgMsh2	43589396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	152	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon4:c.T301C:p.Y101H,Kynu:NM_001289594:exon4:c.T301C:p.Y101H,Kynu:NM_027552:exon4:c.T301C:p.Y101H"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999944	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	43679978	12A2p6	cell line	sgMsh2	43679978	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	44	0	0	NA	exonic	Kynu	nonsynonymous SNV	"Kynu:NM_001289593:exon13:c.T1271G:p.V424G,Kynu:NM_027552:exon13:c.T1271G:p.V424G"	2qB	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9914846	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	52111938	12A2p6	cell line	sgMsh2	52111938	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.295	156	0	0	NA	exonic	Rif1	synonymous SNV	"Rif1:NM_001355414:exon30:c.T5403C:p.A1801A,Rif1:NM_001355415:exon30:c.T5382C:p.A1794A,Rif1:NM_175238:exon30:c.T5403C:p.A1801A"	2qC1.1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999958	CTT	synonymous	CTTCC	10	CTTCCCTTCC	NA
M3_p20	chr2	52299574	12A2p6	cell line	sgMsh2	52299574	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.214	108	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon25:c.A2303G:p.Y768C	2qC1.1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9992322	GTA	nonsynonymous	TGCTT	12	TGCTTTGCTTTG	NA
M3_p20	chr2	57305814	12A2p6	cell line	sgMsh2	57305814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	390	0	0	NA	exonic	Gpd2	nonsynonymous SNV	"Gpd2:NM_001145820:exon5:c.A406G:p.M136V,Gpd2:NM_010274:exon5:c.A406G:p.M136V"	2qC1.1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.31882075	3	1.03E-09	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	57999422	12A2p6	cell line	sgMsh2	57999422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	49	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon1:c.G1033T:p.G345C	2qC1.1	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9939241	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	62705952	12A2p6	cell line	sgMsh2	62705952	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	98	0	0	NA	exonic	Kcnh7	synonymous SNV	Kcnh7:NM_133207:exon15:c.C3285A:p.S1095S	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997817	TGG	synonymous	NA	NA	NA	NA
M3_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	102	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M3_p20	chr2	63980530	12A2p6	cell line	sgMsh2	63980530	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	136	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A395T:p.K132I,Fign:NM_001267846:exon4:c.A362T:p.K121I,Fign:NM_001267847:exon4:c.A362T:p.K121I"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999835	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	65460685	12A2p6	cell line	sgMsh2	65460685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	185	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon27:c.A5863G:p.T1955A,Scn3a:NM_001355167:exon27:c.A5812G:p.T1938A,Scn3a:NM_001355168:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355169:exon27:c.A5725G:p.T1909A,Scn3a:NM_001355170:exon27:c.A5716G:p.T1906A,Scn3a:NM_001355171:exon27:c.A3958G:p.T1320A,Scn3a:NM_018732:exon27:c.A5716G:p.T1906A"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.788195743	1	0.7160187	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	210	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr2	66093613	12A2p6	cell line	sgMsh2	66093613	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	200	0	0	NA	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon7:c.T1310G:p.V437G	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	135	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr2	67512510	12A2p6	cell line	sgMsh2	67512510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	168	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.A5094G:p.L1698L,Xirp2:NM_001083919:exon7:c.A5094G:p.L1698L"	2qC1.3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999981	TAA	synonymous	NA	NA	NA	NA
M3_p20	chr2	69284628	12A2p6	cell line	sgMsh2	69284628	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	185	0	0	NA	exonic	Abcb11	nonsynonymous SNV	"Abcb11:NM_021022:exon16:c.G1973A:p.S658N,Abcb11:NM_001363492:exon17:c.G1973A:p.S658N"	2qC2	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999994	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	69397704	12A2p6	cell line	sgMsh2	69397704	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.36	138	0	0	NA	exonic	Dhrs9	frameshift insertion	Dhrs9:NM_175512:exon4:c.662dupA:p.L224Tfs*20	2qC2	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TGA	frameshift	A	8	AAAAAAAA	1
M3_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	353	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	1.01E-09	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	70000509	12A2p6	cell line	sgMsh2	70000509	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	196	0	0	NA	exonic	Ubr3	synonymous SNV	"Ubr3:NM_001303033:exon30:c.T4431C:p.G1477G,Ubr3:NM_177783:exon30:c.T4419C:p.G1473G"	2qC2	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999997	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr2	71343994	12A2p6	cell line	sgMsh2	71343994	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	283	0	0	NA	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon3:c.T105C:p.T35T	2qC2	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.75E-09	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	73580275	12A2p6	cell line	sgMsh2	73580275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	107	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon1:c.A13C:p.T5P	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998816	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	12	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9292833	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76046785	12A2p6	cell line	sgMsh2	76046785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	310	0	0	NA	exonic	Pde11a	nonsynonymous SNV	Pde11a:NM_001081033:exon15:c.A2339G:p.Y780C	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	1.12E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76555915	12A2p6	cell line	sgMsh2	76555915	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	215	0	0	NA	exonic	Osbpl6	nonsynonymous SNV	"Osbpl6:NM_145525:exon11:c.A920C:p.K307T,Osbpl6:NM_001290733:exon12:c.A920C:p.K307T"	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	0.208119101	3	1.01E-09	AAA	nonsynonymous	AAAG	9	AAAGAAAGA	NA
M3_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	103	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998446	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr2	76630499	12A2p6	cell line	sgMsh2	76630499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	148	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon8:c.A854G:p.H285R	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999927	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76647184	12A2p6	cell line	sgMsh2	76647184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	284	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon2:c.T176C:p.V59A	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	1.70E-09	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76736474	12A2p6	cell line	sgMsh2	76736474	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	269	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.C59093T:p.T19698I,Ttn:NM_011652:exon275:c.C78836T:p.T26279I,Ttn:NM_001385708:exon312:c.C84668T:p.T28223I"	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	2	1	1	2.95E-09	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76736937	12A2p6	cell line	sgMsh2	76736937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	80	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.T58630C:p.F19544L,Ttn:NM_011652:exon275:c.T78373C:p.F26125L,Ttn:NM_001385708:exon312:c.T84205C:p.F28069L"	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.9992579	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76783972	12A2p6	cell line	sgMsh2	76783972	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	167	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon106:c.T26215G:p.C8739G,Ttn:NM_011652:exon227:c.T45958G:p.C15320G,Ttn:NM_001385708:exon264:c.T51790G:p.C17264G"	2qC3	chr2-3197272-76814467	4	2	2	0.91	4.029540036	NA	1	1	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76849122	12A2p6	cell line	sgMsh2	76849122	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	40	0	0	NA	exonic	Ttn	nonsynonymous SNV	Ttn:NM_011652:exon137:c.A29681G:p.N9894S	2qC3	chr2-76814468-76867310	3	NA	NA	0.91	4.029540036	NA	NA	1	1	0.9888524	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76880202	12A2p6	cell line	sgMsh2	76880202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	184	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon89:c.A22792G:p.T7598A,Ttn:NM_001385708:exon91:c.A25849G:p.T8617A"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76894853	12A2p6	cell line	sgMsh2	76894853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	91	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon65:c.T16050C:p.D5350D,Ttn:NM_001385708:exon67:c.T19071C:p.D6357D"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	2	1	1	0.9996486	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	76896383	12A2p6	cell line	sgMsh2	76896383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	255	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon61:c.T15091C:p.Y5031H,Ttn:NM_001385708:exon63:c.T18112C:p.Y6038H"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	6.04E-09	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76921578	12A2p6	cell line	sgMsh2	76921578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	110	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon44:c.G10213A:p.G3405S,Ttn:NM_011652:exon45:c.G10351A:p.G3451S,Ttn:NM_001385708:exon46:c.G10726A:p.G3576S"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999034	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	76932453	12A2p6	cell line	sgMsh2	76932453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	32	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon41:c.C9861T:p.S3287S,Ttn:NM_001385708:exon42:c.C9999T:p.S3333S,Ttn:NM_011652:exon42:c.C9999T:p.S3333S"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	0.9809473	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	224	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	4.25E-08	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	78301701	12A2p6	cell line	sgMsh2	78301701	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	213	0	0	NA	exonic	Gm14461	nonsynonymous SNV	Gm14461:NM_177843:exon6:c.T10C:p.W4R	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	0.283396222	3	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	325	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	1.04E-09	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	79644718	12A2p6	cell line	sgMsh2	79644718	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	89	0	0	NA	exonic	Itprid2	synonymous SNV	Itprid2:NM_080558:exon8:c.T1020C:p.P340P	2qC3	chr2-76867311-82253895	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995975	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	82256483	12A2p6	cell line	sgMsh2	82256483	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	160	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.A655T:p.T219S	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	0.9999968	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	339	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.752771216	2	0.9799242	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	83915312	12A2p6	cell line	sgMsh2	83915312	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	382	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1781T:p.N594I	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.828048337	1	0.994748	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	83915943	12A2p6	cell line	sgMsh2	83915943	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	435	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon9:c.A1150G:p.I384V	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	85035189	12A2p6	cell line	sgMsh2	85035189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	134	0	0	NA	exonic	P2rx3	synonymous SNV	P2rx3:NM_145526:exon1:c.C111T:p.Y37Y	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.74834315	2	0.6620699	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr2	85353537	12A2p6	cell line	sgMsh2	85353537	G	A	SNV	Mutect2;MuSe;Vardict	3	0.067	594	0	0	NA	exonic	Olfr988	synonymous SNV	Olfr988:NM_001011534:exon1:c.C388T:p.L130L	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.29668042	3	1	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr2	85608517	12A2p6	cell line	sgMsh2	85608517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	909	0	0	NA	exonic	Olfr1000	nonsynonymous SNV	Olfr1000:NM_001011695:exon1:c.T392C:p.L131P	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	85840993	12A2p6	cell line	sgMsh2	85840993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	220	0	0	NA	exonic	Olfr1019	nonsynonymous SNV	Olfr1019:NM_147015:exon1:c.A797G:p.Y266C	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	85951228	12A2p6	cell line	sgMsh2	85951228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	388	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T164C:p.L55P	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	85992050	12A2p6	cell line	sgMsh2	85992050	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	303	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.C232A:p.P78T	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1.19E-09	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	86160070	12A2p6	cell line	sgMsh2	86160070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	482	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A299G:p.Q100R	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.903325459	1	9.51E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	86197827	12A2p6	cell line	sgMsh2	86197827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	299	0	0	NA	exonic	Olfr1045	synonymous SNV	Olfr1045:NM_147017:exon1:c.A924G:p.P308P	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.74834315	2	0.9752622	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr2	86198521	12A2p6	cell line	sgMsh2	86198521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	557	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.T230C:p.I77T	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	581	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.969746448	1	1	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr2	86538215	12A2p6	cell line	sgMsh2	86538215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	203	0	0	NA	exonic	Olfr1079	synonymous SNV	Olfr1079:NM_146407:exon1:c.T699C:p.A233A	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.885613195	1	0.9995079	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	86785904	12A2p6	cell line	sgMsh2	86785904	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.024	335	0	0	NA	exonic	Olfr1093	nonsynonymous SNV	"Olfr1093:NM_001368206:exon2:c.T173G:p.V58G,Olfr1093:NM_146366:exon3:c.T173G:p.V58G"	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.106273583	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	86978375	12A2p6	cell line	sgMsh2	86978375	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	340	0	0	NA	exonic	Olfr1100	nonsynonymous SNV	Olfr1100:NM_146594:exon1:c.C420A:p.F140L	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1.02E-09	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	87371819	12A2p6	cell line	sgMsh2	87371819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	247	0	0	NA	exonic	Olfr1121	nonsynonymous SNV	Olfr1121:NM_146348:exon1:c.A286G:p.R96G	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.898897393	1	0.999955	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	87510243	12A2p6	cell line	sgMsh2	87510243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	164	0	0	NA	exonic	Pramel6	synonymous SNV	"Pramel6:NM_001356546:exon4:c.C918T:p.C306C,Pramel6:NM_178249:exon4:c.C918T:p.C306C,Pramel6:NM_001356544:exon5:c.C918T:p.C306C,Pramel6:NM_001356545:exon5:c.C918T:p.C306C"	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.916609657	1	0.9997344	GCC	synonymous	NA	NA	NA	NA
M3_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	415	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.203691035	3	1	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.316	333	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
M3_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	288	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.850188667	1	0.9986027	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	445	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.987458712	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	269	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	2.95E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88034611	12A2p6	cell line	sgMsh2	88034611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	130	0	0	NA	exonic	Olfr73	nonsynonymous SNV	Olfr73:NM_054090:exon1:c.A527G:p.N176S	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.518083719	2	0.9991253	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88034913	12A2p6	cell line	sgMsh2	88034913	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.161	386	0	0	NA	exonic	Olfr73	synonymous SNV	Olfr73:NM_054090:exon1:c.C225T:p.S75S	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.712918622	2	0.9999518	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	1002	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	453	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr2	88412110	12A2p6	cell line	sgMsh2	88412110	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	365	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.G547A:p.A183T	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.841332535	1	0.9988302	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88446489	12A2p6	cell line	sgMsh2	88446489	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	438	0	0	NA	exonic	Olfr1182	nonsynonymous SNV	Olfr1182:NM_001011535:exon3:c.G448T:p.G150C	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.947606118	1	1.05E-09	CCA	nonsynonymous	CAC	8	CACCACCA	NA
M3_p20	chr2	88701308	12A2p6	cell line	sgMsh2	88701308	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	349	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T20A:p.V7D	2qD	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.770483479	2	0.8740796	GAC	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr2	88767458	12A2p6	cell line	sgMsh2	88767458	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	566	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.A856T:p.T286S	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.234687497	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88794555	12A2p6	cell line	sgMsh2	88794555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.T172C:p.Y58H	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.876757063	1	0.999972	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	88896946	12A2p6	cell line	sgMsh2	88896946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	327	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.T650C:p.I217T	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1.04E-09	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
M3_p20	chr2	88909930	12A2p6	cell line	sgMsh2	88909930	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	256	0	0	NA	exonic	Olfr1209	synonymous SNV	Olfr1209:NM_146461:exon1:c.T462G:p.S154S	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.823620271	1	0.9760665	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	89013584	12A2p6	cell line	sgMsh2	89013584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	423	0	0	NA	exonic	Olfr1216	nonsynonymous SNV	Olfr1216:NM_146893:exon1:c.T479C:p.I160T	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	89296493	12A2p6	cell line	sgMsh2	89296493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	315	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.C776A:p.P259H	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.859044799	1	0.9996572	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	89296783	12A2p6	cell line	sgMsh2	89296783	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	277	0	0	NA	exonic	Olfr1230	stopgain	Olfr1230:NM_146789:exon1:c.T486A:p.Y162X	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999994	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	211	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.850188667	1	0.9949674	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	89340100	12A2p6	cell line	sgMsh2	89340100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	287	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.T201C:p.Y67Y	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	1.57E-09	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	89657305	12A2p6	cell line	sgMsh2	89657305	C	-	Deletion	Mutect2;Vardict	2	0.045	615	0	0	NA	exonic	Olfr1250	frameshift deletion	Olfr1250:NM_146965:exon1:c.135delG:p.T46Qfs*1	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.199262969	NA	NA	TCC	frameshift	NA	NA	NA	-1
M3_p20	chr2	89752713	12A2p6	cell line	sgMsh2	89752713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	678	0	0	NA	exonic	Olfr1253	synonymous SNV	Olfr1253:NM_146373:exon1:c.G114A:p.V38V	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.735058952	2	0.9999988	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr2	89977882	12A2p6	cell line	sgMsh2	89977882	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	412	0	0	NA	exonic	Olfr1260	nonsynonymous SNV	Olfr1260:NM_146981:exon1:c.C103T:p.L35F	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.190406837	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	90149288	12A2p6	cell line	sgMsh2	90149288	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	758	0	0	NA	exonic	Olfr1270	synonymous SNV	Olfr1270:NM_146985:exon1:c.C717A:p.A239A	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.805908007	1	0.9488175	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	447	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91190884	12A2p6	cell line	sgMsh2	91190884	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	127	0	0	NA	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon5:c.A557C:p.Q186P,Nr1h3:NM_001355279:exon5:c.A557C:p.Q186P,Nr1h3:NM_013839:exon5:c.A557C:p.Q186P"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	0.9999696	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91212313	12A2p6	cell line	sgMsh2	91212313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	384	0	0	NA	exonic	Ddb2	nonsynonymous SNV	"Ddb2:NM_001362705:exon5:c.A634G:p.N212D,Ddb2:NM_028119:exon9:c.A1201G:p.N401D"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	257	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	5.40E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91480474	12A2p6	cell line	sgMsh2	91480474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	92	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon14:c.A1859G:p.H620R	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	1	1	0.9996717	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91649212	12A2p6	cell line	sgMsh2	91649212	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	102	0	0	NA	exonic	Zfp408	nonsynonymous SNV	Zfp408:NM_001347175:exon2:c.G260A:p.G87E	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	1	0.9998337	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	91931373	12A2p6	cell line	sgMsh2	91931373	T	-	Deletion	Strelka2;Vardict	2	0.2589	112	0	0	NA	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M3_p20	chr2	92370771	12A2p6	cell line	sgMsh2	92370771	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	33	0	0	NA	exonic	Large2	nonsynonymous SNV	"Large2:NM_001166633:exon2:c.T68C:p.V23A,Large2:NM_001290773:exon2:c.T68C:p.V23A,Large2:NM_172670:exon2:c.T68C:p.V23A"	2qE1	chr2-82255917-97631195	5	3	2	0.91	4.029540036	NA	1	0.805908007	1	0.8599995	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	101696760	12A2p6	cell line	sgMsh2	101696760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	269	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon7:c.G854A:p.R285H,Traf6:NM_009424:exon8:c.G854A:p.R285H"	2qE2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	2.95E-09	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	392	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.27454009	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	104685452	12A2p6	cell line	sgMsh2	104685452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	149	0	0	NA	exonic	Tcp11l1	synonymous SNV	Tcp11l1:NM_177190:exon8:c.T1065C:p.S355S	2qE2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999932	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr2	105387932	12A2p6	cell line	sgMsh2	105387932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	219	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon6:c.A965G:p.H322R	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	ATG	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr2	107295542	12A2p6	cell line	sgMsh2	107295542	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	231	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A620C:p.E207A	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	2.68E-08	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	109724136	12A2p6	cell line	sgMsh2	109724136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	172	0	0	NA	exonic	Bdnf	nonsynonymous SNV	"Bdnf:NM_001285422:exon1:c.T734G:p.I245S,Bdnf:NM_001048139:exon2:c.T734G:p.I245S,Bdnf:NM_001048141:exon2:c.T734G:p.I245S,Bdnf:NM_001048142:exon2:c.T734G:p.I245S,Bdnf:NM_001285416:exon2:c.T734G:p.I245S,Bdnf:NM_001285417:exon2:c.T734G:p.I245S,Bdnf:NM_001285418:exon2:c.T734G:p.I245S,Bdnf:NM_001285419:exon2:c.T734G:p.I245S,Bdnf:NM_001285420:exon2:c.T734G:p.I245S,Bdnf:NM_001285421:exon2:c.T734G:p.I245S,Bdnf:NM_007540:exon2:c.T758G:p.I253S,Bdnf:NM_001316310:exon3:c.T734G:p.I245S"	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999986	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	110362795	12A2p6	cell line	sgMsh2	110362795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	69	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A1G:p.M1V	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9984335	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	110738777	12A2p6	cell line	sgMsh2	110738777	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	43	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon11:c.A1003T:p.I335L,Ano3:NM_001128103:exon14:c.A1441T:p.I481L,Ano3:NM_001355245:exon14:c.A1441T:p.I481L"	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.9828442	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	110884877	12A2p6	cell line	sgMsh2	110884877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	92	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001128103:exon2:c.T215C:p.F72S,Ano3:NM_001355245:exon2:c.T215C:p.F72S,Ano3:NM_001355246:exon2:c.T215C:p.F72S"	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996717	AAA	nonsynonymous	AGAA	9	AGAAAGAAA	NA
M3_p20	chr2	111091876	12A2p6	cell line	sgMsh2	111091876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	238	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon58:c.T4194C:p.D1398D	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1.70E-08	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	111139008	12A2p6	cell line	sgMsh2	111139008	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	211	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon35:c.T2632A:p.L878I	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999884	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	111270074	12A2p6	cell line	sgMsh2	111270074	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	228	0	0	NA	exonic	Olfr1277	nonsynonymous SNV	Olfr1277:NM_146396:exon1:c.A292C:p.M98L	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	3.26E-08	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Vardict	2	0.054	1230	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.239115563	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	111409018	12A2p6	cell line	sgMsh2	111409018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	419	0	0	NA	exonic	Olfr1285	nonsynonymous SNV	Olfr1285:NM_001370925:exon1:c.C515T:p.T172M	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	400	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	378	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.261255892	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	112042552	12A2p6	cell line	sgMsh2	112042552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	504	0	0	NA	exonic	Olfr1312	nonsynonymous SNV	Olfr1312:NM_146362:exon1:c.T479C:p.V160A	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	112142466	12A2p6	cell line	sgMsh2	112142466	A	C	SNV	Mutect2;MuSe;Vardict	3	0.05	506	0	0	NA	exonic	Olfr1317	nonsynonymous SNV	Olfr1317:NM_146448:exon1:c.A520C:p.M174L	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.221403299	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	112156184	12A2p6	cell line	sgMsh2	112156184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	564	0	0	NA	exonic	Olfr1318	nonsynonymous SNV	Olfr1318:NM_001011802:exon1:c.A232G:p.T78A	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	112825831	12A2p6	cell line	sgMsh2	112825831	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	269	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon38:c.A5819T:p.E1940V	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	2.95E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	107	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998816	AAC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr2	113289743	12A2p6	cell line	sgMsh2	113289743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	115	0	0	NA	exonic	Tmco5b	synonymous SNV	Tmco5b:NM_029232:exon6:c.A363G:p.K121K	2qE4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999313	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr2	114118744	12A2p6	cell line	sgMsh2	114118744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	90	0	0	NA	exonic	Aqr	nonsynonymous SNV	"Aqr:NM_001290788:exon26:c.A2972G:p.Y991C,Aqr:NM_009702:exon26:c.A2972G:p.Y991C"	2qE4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996239	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	191	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	158	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999963	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	118791987	12A2p6	cell line	sgMsh2	118791987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	92	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3199C:p.C1067R	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996717	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	118917068	12A2p6	cell line	sgMsh2	118917068	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	40	0	0	NA	exonic	Bahd1	synonymous SNV	Bahd1:NM_001045523:exon2:c.C1167T:p.C389C	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9888524	GCC	synonymous	NA	NA	NA	NA
M3_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.418	87	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M3_p20	chr2	119330981	12A2p6	cell line	sgMsh2	119330981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	77	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon8:c.A1043G:p.H348R	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990902	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	84	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9753209	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	119778184	12A2p6	cell line	sgMsh2	119778184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	91	0	0	NA	exonic	Rpap1	synonymous SNV	"Rpap1:NM_001163701:exon6:c.A696G:p.V232V,Rpap1:NM_177294:exon7:c.A696G:p.V232V"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	119921751	12A2p6	cell line	sgMsh2	119921751	T	C	SNV	Mutect2;Strelka2	2	0.231	85	0	0	NA	exonic	Mga	synonymous SNV	"Mga:NM_001164274:exon7:c.T2325C:p.P775P,Mga:NM_013720:exon7:c.T2325C:p.P775P"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994717	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr2	120030127	12A2p6	cell line	sgMsh2	120030127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	286	0	0	NA	exonic	Jmjd7	stopgain	Jmjd7:NM_001114637:exon2:c.G134A:p.W45X	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.61E-09	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120191292	12A2p6	cell line	sgMsh2	120191292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	86	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.A334G:p.T112A,Pla2g4e:NM_001363090:exon4:c.A67G:p.T23A"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995064	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120320682	12A2p6	cell line	sgMsh2	120320682	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	51	0	0	NA	exonic	Vps39	frameshift deletion	"Vps39:NM_001363053:exon22:c.2361delT:p.K788Rfs*20,Vps39:NM_001363054:exon22:c.2058delT:p.K687Rfs*20,Vps39:NM_178851:exon23:c.2430delT:p.K811Rfs*20,Vps39:NM_147153:exon24:c.2463delT:p.K822Rfs*20"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3_p20	chr2	120430999	12A2p6	cell line	sgMsh2	120430999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	230	0	0	NA	exonic	Ganc	nonsynonymous SNV	Ganc:NM_172672:exon10:c.A959C:p.D320A	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.836904469	1	0.9896195	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	119	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999476	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120748632	12A2p6	cell line	sgMsh2	120748632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	211	0	0	NA	exonic	Ttbk2	nonsynonymous SNV	"Ttbk2:NM_001024857:exon13:c.G1801T:p.G601C,Ttbk2:NM_001024856:exon14:c.G1801T:p.G601C,Ttbk2:NM_080788:exon14:c.G2008T:p.G670C"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120977781	12A2p6	cell line	sgMsh2	120977781	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	166	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon2:c.T263G:p.I88S	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999979	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	120986661	12A2p6	cell line	sgMsh2	120986661	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	137	0	0	NA	exonic	Tmem62	nonsynonymous SNV	Tmem62:NM_175285:exon6:c.A697G:p.T233A	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999846	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	109	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998967	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	121307586	12A2p6	cell line	sgMsh2	121307586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	119	0	0	NA	exonic	Map1a	nonsynonymous SNV	"Map1a:NM_001173506:exon5:c.A8026G:p.S2676G,Map1a:NM_032393:exon6:c.A8740G:p.S2914G"	2qE5	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999476	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999716	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	126594161	12A2p6	cell line	sgMsh2	126594161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	95	0	0	NA	exonic	Hdc	nonsynonymous SNV	Hdc:NM_008230:exon12:c.T1789C:p.S597P	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.650925698	2	0.9582197	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	338	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	135	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.717346688	2	0.8932075	TTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	127529468	12A2p6	cell line	sgMsh2	127529468	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	185	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon21:c.T2269G:p.C757G,Prom2:NM_178047:exon21:c.T2269G:p.C757G"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	127656060	12A2p6	cell line	sgMsh2	127656060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	56	0	0	NA	exonic	Mal	nonsynonymous SNV	"Mal:NM_001171187:exon1:c.T74C:p.L25S,Mal:NM_010762:exon1:c.T74C:p.L25S"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.761627348	1	0.7313142	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	128685915	12A2p6	cell line	sgMsh2	128685915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	124	0	0	NA	exonic	Anapc1	nonsynonymous SNV	Anapc1:NM_008569:exon2:c.A122G:p.Q41R	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9998038	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	129199995	12A2p6	cell line	sgMsh2	129199995	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	179	0	0	NA	exonic	Slc20a1	nonsynonymous SNV	"Slc20a1:NM_001159593:exon2:c.T277A:p.L93M,Slc20a1:NM_015747:exon2:c.T277A:p.L93M"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	186	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999995	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	129285010	12A2p6	cell line	sgMsh2	129285010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	125	0	0	NA	exonic	Ckap2l	nonsynonymous SNV	Ckap2l:NM_181589:exon4:c.A1247C:p.D416A	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.451662729	2	0.9110295	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	129460444	12A2p6	cell line	sgMsh2	129460444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	533	0	0	NA	exonic	F830045P16Rik	synonymous SNV	"F830045P16Rik:NM_001379444:exon5:c.A1227G:p.V409V,F830045P16Rik:NM_177653:exon5:c.A1227G:p.V409V"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1	TTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.378	356	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	130101276	12A2p6	cell line	sgMsh2	130101276	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	253	0	0	NA	exonic	AU015228	synonymous SNV	AU015228:NM_001033197:exon1:c.T753C:p.T251T	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.203691035	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr2	130240140	12A2p6	cell line	sgMsh2	130240140	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	192	0	0	NA	exonic	Tmc2	frameshift deletion	Tmc2:NM_138655:exon11:c.1242delG:p.A415Pfs*19	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3_p20	chr2	130405550	12A2p6	cell line	sgMsh2	130405550	-	C	Insertion	Strelka2;Vardict	2	0.2	45	0	0	NA	exonic	1700020A23Rik	frameshift insertion	"1700020A23Rik:NM_001163483:exon1:c.6dupC:p.W5Lfs*44,1700020A23Rik:NM_029375:exon2:c.6dupC:p.W5Lfs*44"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.885613195	NA	NA	TGC	frameshift	C	5	CCCCC	1
M3_p20	chr2	130970141	12A2p6	cell line	sgMsh2	130970141	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	102	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon12:c.A2005T:p.T669S	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998337	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	131053399	12A2p6	cell line	sgMsh2	131053399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	34	0	0	NA	exonic	Adam33	synonymous SNV	"Adam33:NM_001163529:exon16:c.A1899G:p.G633G,Adam33:NM_033615:exon16:c.A1899G:p.G633G"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9833297	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.138	41	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.611073104	2	0.7102208	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	131953400	12A2p6	cell line	sgMsh2	131953400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	38	0	0	NA	exonic	Prn;Prnd	nonsynonymous SNV	"Prnd:NM_001126338:exon2:c.A385G:p.K129E,Prnd:NM_001278257:exon2:c.A385G:p.K129E,Prnd:NM_001278520:exon2:c.A385G:p.K129E,Prnd:NM_023043:exon2:c.A385G:p.K129E,Prn:NM_001278258:exon4:c.A439G:p.K147E,Prn:NM_001278259:exon4:c.A439G:p.K147E"	2qF2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9872491	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	138	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.380813674	3	0.9486826	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	212	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	134988178	12A2p6	cell line	sgMsh2	134988178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	135	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon3:c.G232A:p.A78T,Plcb1:NM_019677:exon3:c.G232A:p.A78T"	2qF3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999824	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	136756134	12A2p6	cell line	sgMsh2	136756134	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	84	0	0	NA	exonic	Snap25	nonsynonymous SNV	"Snap25:NM_001291056:exon2:c.C5A:p.A2D,Snap25:NM_001355254:exon2:c.C5A:p.A2D,Snap25:NM_001355255:exon2:c.C5A:p.A2D,Snap25:NM_011428:exon2:c.C5A:p.A2D"	2qF3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9994345	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	136769755	12A2p6	cell line	sgMsh2	136769755	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	215	0	0	NA	exonic	Snap25	nonsynonymous SNV	Snap25:NM_001291056:exon5:c.G176A:p.R59H	2qF3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.792623809	1	0.7529799	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	142848001	12A2p6	cell line	sgMsh2	142848001	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	175	0	0	NA	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon9:c.C990T:p.I330I,Kif16b:NM_001355123:exon9:c.C990T:p.I330I"	2qG1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.287824288	3	0.9999977	TGA	synonymous	NA	NA	NA	NA
M3_p20	chr2	144502992	12A2p6	cell line	sgMsh2	144502992	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	150	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon9:c.A844C:p.N282H,Dzank1:NM_001360362:exon9:c.A844C:p.N282H,Dzank1:NM_001360363:exon9:c.A844C:p.N282H,Dzank1:NM_172859:exon9:c.A844C:p.N282H"	2qG1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999936	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	149407305	12A2p6	cell line	sgMsh2	149407305	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	478	0	0	NA	exonic	Cst10	nonsynonymous SNV	Cst10:NM_021405:exon2:c.T274G:p.L92V	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	nonsynonymous	ACT	9	ACTACTACT	NA
M3_p20	chr2	150625090	12A2p6	cell line	sgMsh2	150625090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	152	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.A1586G:p.H529R	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.270112024	3	0.9999964	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	151706653	12A2p6	cell line	sgMsh2	151706653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	45	0	0	NA	exonic	Tmem74b	nonsynonymous SNV	Tmem74b:NM_001160363:exon2:c.T299C:p.V100A	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9920399	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	68	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.991478	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	152441250	12A2p6	cell line	sgMsh2	152441250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	278	0	0	NA	exonic	6820408C15Rik	nonsynonymous SNV	"6820408C15Rik:NM_001379452:exon6:c.T626C:p.L209P,6820408C15Rik:NM_001289738:exon10:c.T836C:p.L279P,6820408C15Rik:NM_177656:exon10:c.T833C:p.L278P"	2qG3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	2.06E-09	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
M3_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	211	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.336533014	3	0.9999682	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr2	153392875	12A2p6	cell line	sgMsh2	153392875	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	239	0	0	NA	exonic	Asxl1	nonsynonymous SNV	Asxl1:NM_001039939:exon6:c.T506A:p.L169Q	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1.60E-08	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	154504560	12A2p6	cell line	sgMsh2	154504560	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	102	0	0	NA	exonic	Cbfa2t2	nonsynonymous SNV	"Cbfa2t2:NM_009823:exon3:c.T186A:p.N62K,Cbfa2t2:NM_172860:exon3:c.T186A:p.N62K"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998337	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	154625009	12A2p6	cell line	sgMsh2	154625009	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	47	0	0	NA	exonic	Zfp341	synonymous SNV	Zfp341:NM_199304:exon3:c.A297T:p.A99A	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	CAC	synonymous	CAG	8	CAGCAGCA	NA
M3_p20	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.278	124	0	0	NA	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M3_p20	chr2	155437993	12A2p6	cell line	sgMsh2	155437993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	203	0	0	NA	exonic	Ncoa6	synonymous SNV	"Ncoa6:NM_001242558:exon2:c.T102C:p.D34D,Ncoa6:NM_019825:exon2:c.T102C:p.D34D"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	CAT	synonymous	TCA	8	TCATCATC	NA
M3_p20	chr2	155814108	12A2p6	cell line	sgMsh2	155814108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	145	0	0	NA	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon8:c.G1465A:p.V489M	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9993002	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.188	202	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.832476403	1	0.980375	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	156264345	12A2p6	cell line	sgMsh2	156264345	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	412	0	0	NA	exonic	Phf20	synonymous SNV	Phf20:NM_172674:exon5:c.T405G:p.A135A	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CTT	synonymous	T	5	TTTTT	NA
M3_p20	chr2	156312789	12A2p6	cell line	sgMsh2	156312789	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.175	91	0	0	NA	exonic	Cnbd2	nonsynonymous SNV	"Cnbd2:NM_001316755:exon1:c.C257T:p.P86L,Cnbd2:NM_027585:exon1:c.C257T:p.P86L"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.774911545	1	0.7186632	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	156525099	12A2p6	cell line	sgMsh2	156525099	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.294	77	0	0	NA	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291121:exon15:c.T1851C:p.H617H,Epb41l1:NM_001368802:exon15:c.T1884C:p.H628H,Epb41l1:NM_001368804:exon15:c.T1887C:p.H629H,Epb41l1:NM_013510:exon15:c.T1887C:p.H629H,Epb41l1:NM_001291120:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368801:exon16:c.T1863C:p.H621H,Epb41l1:NM_001368803:exon16:c.T1887C:p.H629H,Epb41l1:NM_001368800:exon18:c.T3918C:p.H1306H"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990902	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr2	156749181	12A2p6	cell line	sgMsh2	156749181	A	G	SNV	Mutect2;Vardict	2	0.143	25	0	0	NA	exonic	Dlgap4	synonymous SNV	"Dlgap4:NM_001042487:exon4:c.A720G:p.P240P,Dlgap4:NM_001042488:exon4:c.A216G:p.P72P,Dlgap4:NM_001277187:exon9:c.A2286G:p.P762P,Dlgap4:NM_001277186:exon10:c.A2328G:p.P776P,Dlgap4:NM_146128:exon10:c.A2337G:p.P779P"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.633213434	1	0.006538648	CAC	synonymous	C	5	CCCCC	NA
M3_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	608	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	1	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	91	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9996486	GCG	synonymous	NA	NA	NA	NA
M3_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	24	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9676163	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	160908277	12A2p6	cell line	sgMsh2	160908277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	47	0	0	NA	exonic	Emilin3	synonymous SNV	"Emilin3:NM_001291145:exon4:c.T1410C:p.S470S,Emilin3:NM_182840:exon4:c.T1551C:p.S517S"	2qH2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9930451	TAC	synonymous	GTG	8	GTGGTGGT	NA
M3_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	347	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.01E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M3_p20	chr2	163568959	12A2p6	cell line	sgMsh2	163568959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	140	0	0	NA	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon9:c.A1202G:p.N401S,Hnf4a:NM_001312906:exon10:c.A1127G:p.N376S,Hnf4a:NM_001312907:exon10:c.A1127G:p.N376S"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999874	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	164054766	12A2p6	cell line	sgMsh2	164054766	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	100	0	0	NA	exonic	Tomm34	nonsynonymous SNV	"Tomm34:NM_001291155:exon6:c.C760A:p.L254I,Tomm34:NM_025996:exon6:c.C760A:p.L254I"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998094	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	164178531	12A2p6	cell line	sgMsh2	164178531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	56	0	0	NA	exonic	Wfdc5	nonsynonymous SNV	Wfdc5:NM_145369:exon3:c.T340C:p.C114R	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9962165	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	164777838	12A2p6	cell line	sgMsh2	164777838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	194	0	0	NA	exonic	Tnnc2	synonymous SNV	Tnnc2:NM_009394:exon4:c.T207C:p.G69G	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.743915084	2	0.8867871	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr2	165277452	12A2p6	cell line	sgMsh2	165277452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	40	0	0	NA	exonic	Slc35c2	nonsynonymous SNV	"Slc35c2:NM_001252573:exon9:c.G967T:p.G323C,Slc35c2:NM_001252574:exon9:c.G967T:p.G323C,Slc35c2:NM_001252575:exon9:c.G625T:p.G209C,Slc35c2:NM_001363016:exon9:c.G967T:p.G323C,Slc35c2:NM_144893:exon9:c.G967T:p.G323C,Slc35c2:NM_001363015:exon10:c.G967T:p.G323C"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9888524	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	166951271	12A2p6	cell line	sgMsh2	166951271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	179	0	0	NA	exonic	Stau1	nonsynonymous SNV	"Stau1:NM_001109905:exon8:c.A925G:p.S309G,Stau1:NM_001109906:exon8:c.A943G:p.S315G,Stau1:NM_001291160:exon8:c.A925G:p.S309G,Stau1:NM_011490:exon8:c.A919G:p.S307G"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999991	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	168098525	12A2p6	cell line	sgMsh2	168098525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	124	0	0	NA	exonic	Pard6b	nonsynonymous SNV	Pard6b:NM_021409:exon3:c.C431T:p.S144F	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999627	TCC	nonsynonymous	CATC	8	CATCCATC	NA
M3_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	356	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	168648698	12A2p6	cell line	sgMsh2	168648698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	91	0	0	NA	exonic	Atp9a	nonsynonymous SNV	"Atp9a:NM_001289445:exon21:c.T2159A:p.V720D,Atp9a:NM_001289446:exon21:c.T2153A:p.V718D,Atp9a:NM_001354977:exon21:c.T2141A:p.V714D,Atp9a:NM_001354978:exon21:c.T1919A:p.V640D,Atp9a:NM_015731:exon21:c.T2207A:p.V736D"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9988121	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	168926540	12A2p6	cell line	sgMsh2	168926540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	97	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.T1151C:p.L384P	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9564768	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	129	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999735	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	102	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	0.411810136	3	0.5091783	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	46	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9925593	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	341	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.01E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr2	178354939	12A2p6	cell line	sgMsh2	178354939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	206	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon34:c.C3470T:p.P1157L	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	178460725	12A2p6	cell line	sgMsh2	178460725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	237	0	0	NA	exonic	Cdh26	synonymous SNV	"Cdh26:NM_001291189:exon6:c.A684G:p.P228P,Cdh26:NM_198656:exon6:c.A684G:p.P228P"	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.81E-08	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr2	179797475	12A2p6	cell line	sgMsh2	179797475	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	0	0	NA	exonic	Cdh4	synonymous SNV	"Cdh4:NM_001316723:exon4:c.C414T:p.A138A,Cdh4:NM_009867:exon4:c.C414T:p.A138A"	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	0.9993522	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr2	180257790	12A2p6	cell line	sgMsh2	180257790	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	352	0	0	NA	exonic	Rps21	nonsynonymous SNV	"Rps21:NM_001355516:exon2:c.C53T:p.S18F,Rps21:NM_001355517:exon3:c.C53T:p.S18F,Rps21:NM_001355518:exon3:c.C53T:p.S18F,Rps21:NM_001355520:exon3:c.C53T:p.S18F,Rps21:NM_001355521:exon3:c.C53T:p.S18F,Rps21:NM_025587:exon3:c.C53T:p.S18F"	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	2	1	1	1.01E-09	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	180472194	12A2p6	cell line	sgMsh2	180472194	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	147	0	0	NA	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon7:c.C1423A:p.L475I,Slco4a1:NM_148933:exon7:c.C1423A:p.L475I"	2qH4	chr2-97631202-181807525	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999922	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr2	181864501	12A2p6	cell line	sgMsh2	181864501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	180	0	0	NA	exonic	Polr3k	nonsynonymous SNV	Polr3k:NM_025901:exon1:c.G43A:p.E15K	2qH4	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GGA	nonsynonymous	GGA	8	GGAGGAGG	NA
M3_p20	chr3	5243737	12A2p6	cell line	sgMsh2	5243737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	186	0	0	NA	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon2:c.T2022C:p.Y674Y,Zfhx4:NM_030708:exon2:c.T2022C:p.Y674Y"	3qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
M3_p20	chr3	5411830	12A2p6	cell line	sgMsh2	5411830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	73	0	0	NA	exonic	Zfhx4	synonymous SNV	"Zfhx4:NM_001368671:exon11:c.A9507G:p.S3169S,Zfhx4:NM_030708:exon11:c.A9429G:p.S3143S"	3qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	268	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	6620089	12A2p6	cell line	sgMsh2	6620089	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	147	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon1:c.C304A:p.L102I	3qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGG	nonsynonymous	GAAG	9	GAAGGAAGG	NA
M3_p20	chr3	7528672	12A2p6	cell line	sgMsh2	7528672	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	272	0	0	NA	exonic	Zc2hc1a	frameshift deletion	Zc2hc1a:NM_173181:exon7:c.689delC:p.Q232Rfs*30	3qA1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M3_p20	chr3	10420289	12A2p6	cell line	sgMsh2	10420289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	502	0	0	NA	exonic	Snx16	synonymous SNV	Snx16:NM_029068:exon7:c.A846G:p.S282S	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr3	14481277	12A2p6	cell line	sgMsh2	14481277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	353	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.A481G:p.K161E	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.01E-09	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	14537323	12A2p6	cell line	sgMsh2	14537323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	154	0	0	NA	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon4:c.A475G:p.T159A,Lrrcc1:NM_001163580:exon4:c.A475G:p.T159A,Lrrcc1:NM_028915:exon4:c.A475G:p.T159A"	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999952	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	15548787	12A2p6	cell line	sgMsh2	15548787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	594	0	0	NA	exonic	Sirpb1b	synonymous SNV	Sirpb1b:NM_001173460:exon2:c.G234T:p.S78S	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	1.00E-09	ACG	synonymous	NA	NA	NA	NA
M3_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	81	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.642069566	2	0.934392	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	215	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	0.9999815	ACA	synonymous	NA	NA	NA	NA
M3_p20	chr3	20315918	12A2p6	cell line	sgMsh2	20315918	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	312	0	0	NA	exonic	Agtr1b	nonsynonymous SNV	Agtr1b:NM_175086:exon2:c.A523C:p.T175P	3qA2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9998588	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	27126892	12A2p6	cell line	sgMsh2	27126892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	43	0	0	NA	exonic	Ect2	synonymous SNV	"Ect2:NM_001177625:exon16:c.T1719C:p.A573A,Ect2:NM_001177626:exon16:c.T1719C:p.A573A,Ect2:NM_007900:exon17:c.T1812C:p.A604A"	3qA3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.949763	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr3	28646635	12A2p6	cell line	sgMsh2	28646635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	172	0	0	NA	exonic	Tnik	synonymous SNV	"Tnik:NM_001163008:exon22:c.T2649C:p.S883S,Tnik:NM_001163007:exon23:c.T2736C:p.S912S,Tnik:NM_001163009:exon23:c.T2736C:p.S912S,Tnik:NM_026910:exon24:c.T2760C:p.S920S"	3qA3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9992864	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	466	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	34049256	12A2p6	cell line	sgMsh2	34049256	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	350	0	0	NA	exonic	Fxr1	nonsynonymous SNV	"Fxr1:NM_001113188:exon8:c.G734T:p.R245M,Fxr1:NM_001113189:exon8:c.G734T:p.R245M,Fxr1:NM_008053:exon8:c.G734T:p.R245M"	3qA3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	2.17E-08	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	385	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	40964054	12A2p6	cell line	sgMsh2	40964054	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	95	0	0	NA	exonic	Larp1b	nonsynonymous SNV	"Larp1b:NM_001368221:exon3:c.G129T:p.E43D,Larp1b:NM_001040399:exon4:c.G129T:p.E43D,Larp1b:NM_001368222:exon4:c.G129T:p.E43D"	3qB	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997323	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	41727115	12A2p6	cell line	sgMsh2	41727115	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	446	0	0	NA	exonic	Sclt1	nonsynonymous SNV	Sclt1:NM_001081411:exon5:c.A268C:p.T90P	3qB	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	45392762	12A2p6	cell line	sgMsh2	45392762	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	37	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.G2991T:p.E997D,Pcdh10:NM_001098171:exon4:c.G2991T:p.E997D,Pcdh10:NM_001098172:exon4:c.G2991T:p.E997D"	3qB	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9863641	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	49745181	12A2p6	cell line	sgMsh2	49745181	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	126	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.G2831A:p.S944N	3qC	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.9999441	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	53857973	12A2p6	cell line	sgMsh2	53857973	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	247	0	0	NA	exonic	Ufm1	synonymous SNV	Ufm1:NM_026435:exon6:c.C213A:p.G71G	3qC	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	9.69E-09	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	167	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9828066	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	369	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	383	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	88	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.969746448	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr3	59319520	12A2p6	cell line	sgMsh2	59319520	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	187	0	0	NA	exonic	Igsf10	stopgain	Igsf10:NM_001162884:exon7:c.G6731A:p.W2244X	3qD	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	59329502	12A2p6	cell line	sgMsh2	59329502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	301	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.C3257A:p.A1086D	3qD	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.22E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	62602681	12A2p6	cell line	sgMsh2	62602681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	148	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon2:c.G1012A:p.G338R,Gpr149:NM_177346:exon2:c.G1012A:p.G338R"	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.624357302	2	0.9992629	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	67433363	12A2p6	cell line	sgMsh2	67433363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	312	0	0	NA	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon3:c.T246C:p.G82G	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.10E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	133	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.9999198	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	69025824	12A2p6	cell line	sgMsh2	69025824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	375	0	0	NA	exonic	Smc4	stopgain	"Smc4:NM_001356976:exon13:c.G1642T:p.G548X,Smc4:NM_133786:exon13:c.G1852T:p.G618X"	3qE1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	325	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.04E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	72909020	12A2p6	cell line	sgMsh2	72909020	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	128	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon40:c.C4612T:p.Q1538X	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999716	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	72910423	12A2p6	cell line	sgMsh2	72910423	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	361	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon38:c.G4456T:p.G1486X	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	73051367	12A2p6	cell line	sgMsh2	73051367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	143	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.T71A:p.I24N,Slitrk3:NM_198864:exon2:c.T71A:p.I24N"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.611073104	2	0.9994788	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	75886735	12A2p6	cell line	sgMsh2	75886735	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	159	0	0	NA	exonic	Golim4	nonsynonymous SNV	"Golim4:NM_175193:exon12:c.A1618T:p.S540C,Golim4:NM_001291069:exon13:c.A1702T:p.S568C"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999966	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	79512526	12A2p6	cell line	sgMsh2	79512526	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	514	0	0	NA	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.G442T:p.G148C	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	308	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.14E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	81967015	12A2p6	cell line	sgMsh2	81967015	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	0	0	NA	exonic	Tdo2	synonymous SNV	Tdo2:NM_019911:exon7:c.A696G:p.K232K	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999948	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr3	82108956	12A2p6	cell line	sgMsh2	82108956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	129	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon5:c.A724G:p.S242G,Gucy1a1:NM_001356988:exon5:c.A724G:p.S242G,Gucy1a1:NM_021896:exon5:c.A724G:p.S242G"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999735	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	82371381	12A2p6	cell line	sgMsh2	82371381	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	91	0	0	NA	exonic	Map9	stopgain	"Map9:NM_001081230:exon5:c.C687A:p.Y229X,Map9:NM_001356457:exon5:c.C687A:p.Y229X"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	82903682	12A2p6	cell line	sgMsh2	82903682	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	143	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.C31A:p.L11I	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.9997944	AGG	nonsynonymous	AGG	9	AGGAGGAGG	NA
M3_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	208	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.9999997	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	83059350	12A2p6	cell line	sgMsh2	83059350	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	231	0	0	NA	exonic	Plrg1	nonsynonymous SNV	Plrg1:NM_016784:exon4:c.A283T:p.T95S	3qE3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999459	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	84594306	12A2p6	cell line	sgMsh2	84594306	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	203	0	0	NA	exonic	Tigd4	frameshift deletion	Tigd4:NM_207278:exon1:c.529delA:p.N178Mfs*4	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.876757063	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr3	86998695	12A2p6	cell line	sgMsh2	86998695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	206	0	0	NA	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379503:exon1:c.A176T:p.Y59F,Cd1d1:NM_007639:exon2:c.A272T:p.Y91F"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	87443711	12A2p6	cell line	sgMsh2	87443711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.195	262	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon3:c.A263G:p.N88S,Fcrl5:NM_183222:exon4:c.A527G:p.N176S"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9993448	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	87448357	12A2p6	cell line	sgMsh2	87448357	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	96	0	0	NA	exonic	Fcrl5	nonsynonymous SNV	"Fcrl5:NM_001113238:exon6:c.A1112C:p.E371A,Fcrl5:NM_183222:exon7:c.A1376C:p.E459A"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997499	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	87698865	12A2p6	cell line	sgMsh2	87698865	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	68	0	0	NA	exonic	Arhgef11	nonsynonymous SNV	"Arhgef11:NM_001360195:exon10:c.A806C:p.Q269P,Arhgef11:NM_001003912:exon11:c.A926C:p.Q309P"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.09267373	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	88449705	12A2p6	cell line	sgMsh2	88449705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	78	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.A958G:p.I320V,Sema4a:NM_001163490:exon9:c.A958G:p.I320V,Sema4a:NM_001163491:exon9:c.A958G:p.I320V,Sema4a:NM_013658:exon9:c.A958G:p.I320V"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.988867	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	88651966	12A2p6	cell line	sgMsh2	88651966	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	104	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A1177C:p.S393R	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.74834315	2	0.5316433	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	88652659	12A2p6	cell line	sgMsh2	88652659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	0	0	NA	exonic	Rxfp4	nonsynonymous SNV	Rxfp4:NM_181817:exon1:c.A484G:p.T162A	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.907753525	1	0.9983226	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	88911810	12A2p6	cell line	sgMsh2	88911810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	exonic	Msto1	nonsynonymous SNV	Msto1:NM_144898:exon7:c.T590C:p.L197P	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.9952087	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	88982717	12A2p6	cell line	sgMsh2	88982717	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	227	0	0	NA	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon2:c.A1902T:p.E634D	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	3.49E-08	AAT	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr3	89188430	12A2p6	cell line	sgMsh2	89188430	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	41	0	0	NA	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon10:c.G818T:p.R273M,Fam189b:NM_001014995:exon11:c.G1790T:p.R597M,Fam189b:NM_001355760:exon11:c.G1472T:p.R491M"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9895776	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	89208378	12A2p6	cell line	sgMsh2	89208378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	188	0	0	NA	exonic	Gba	synonymous SNV	"Gba:NM_001077411:exon10:c.A1392G:p.T464T,Gba:NM_008094:exon11:c.A1392G:p.T464T"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr3	89736059	12A2p6	cell line	sgMsh2	89736059	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	319	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon2:c.T502G:p.L168V,Adar:NM_001146296:exon2:c.T1246G:p.L416V,Adar:NM_001357958:exon2:c.T1363G:p.L455V,Adar:NM_019655:exon2:c.T1246G:p.L416V"	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.06E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	89781829	12A2p6	cell line	sgMsh2	89781829	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	40	0	0	NA	exonic	Ube2q1	frameshift deletion	Ube2q1:NM_027315:exon12:c.1229delA:p.N412Tfs*29	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr3	90185515	12A2p6	cell line	sgMsh2	90185515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	123	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon28:c.A3775C:p.S1259R	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.9999323	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	90211937	12A2p6	cell line	sgMsh2	90211937	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.213	245	0	0	NA	exonic	Nup210l	frameshift insertion	Nup210l:NM_029937:exon40:c.5567dupC:p.H1859Sfs*25	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.943178052	NA	NA	TTC	frameshift	C	5	CCCCC	1
M3_p20	chr3	90464836	12A2p6	cell line	sgMsh2	90464836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	58	0	0	NA	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon1:c.A668G:p.H223R	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.948301	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	92123213	12A2p6	cell line	sgMsh2	92123213	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	234	0	0	NA	exonic	Prr9	nonsynonymous SNV	Prr9:NM_175424:exon2:c.C119A:p.P40H	3qF1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	2.20E-08	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	94779986	12A2p6	cell line	sgMsh2	94779986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	43	0	0	NA	exonic	Cgn	nonsynonymous SNV	"Cgn:NM_001037711:exon2:c.T2C:p.M1T,Cgn:NM_001293727:exon2:c.T2C:p.M1T"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	0.9908908	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	95008613	12A2p6	cell line	sgMsh2	95008613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	48	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon6:c.T2939C:p.V980A,Zfp687:NM_030074:exon6:c.T2939C:p.V980A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	0.9934993	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	95763832	12A2p6	cell line	sgMsh2	95763832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	38	0	0	NA	exonic	Rprd2	nonsynonymous SNV	"Rprd2:NM_001368179:exon10:c.A4126G:p.M1376V,Rprd2:NM_001081293:exon11:c.A4258G:p.M1420V,Rprd2:NM_001368178:exon11:c.A4204G:p.M1402V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9872491	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	155	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9987742	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	96192407	12A2p6	cell line	sgMsh2	96192419	CTTCTAGACCTAT	-	Deletion	Mutect2;Vardict	2	0.034	134	0	0	NA	exonic	Sv2a	nonframeshift deletion	Sv2a:NM_022030:exon11:c.1679_1684del:p.D560_F562delinsV	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.150554243	NA	NA	CCT	inframe	NA	NA	NA	-13
M3_p20	chr3	96699427	12A2p6	cell line	sgMsh2	96699427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	0	0	NA	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.T32C:p.V11A,Pias3:NM_018812:exon2:c.T32C:p.V11A,Pias3:NM_146135:exon2:c.T5C:p.V2A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9872491	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	96699439	12A2p6	cell line	sgMsh2	96699439	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	40	0	0	NA	exonic	Pias3	nonsynonymous SNV	"Pias3:NM_001165949:exon2:c.G44C:p.R15P,Pias3:NM_018812:exon2:c.G44C:p.R15P,Pias3:NM_146135:exon2:c.G17C:p.R6P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9859757	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	96706991	12A2p6	cell line	sgMsh2	96706991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	95	0	0	NA	exonic	Nudt17	nonsynonymous SNV	"Nudt17:NM_001162925:exon6:c.A701G:p.D234G,Nudt17:NM_030094:exon6:c.A650G:p.D217G"	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997323	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	97562644	12A2p6	cell line	sgMsh2	97562644	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	497	0	0	NA	exonic	Chd1l	frameshift deletion	Chd1l:NM_026539:exon22:c.2565delT:p.F855Lfs*66	3qF2.1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3_p20	chr3	98104463	12A2p6	cell line	sgMsh2	98104463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	176	0	0	NA	exonic	Notch2	nonsynonymous SNV	Notch2:NM_010928:exon11:c.A1796G:p.Y599C	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999989	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	98126210	12A2p6	cell line	sgMsh2	98126210	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	151	0	0	NA	exonic	Notch2	synonymous SNV	Notch2:NM_010928:exon22:c.C3621T:p.N1207N	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.735058952	2	0.8414213	ACC	synonymous	NA	NA	NA	NA
M3_p20	chr3	102852167	12A2p6	cell line	sgMsh2	102852167	T	C	SNV	Mutect2;Vardict	2	0.088	466	0	0	NA	exonic	Sycp1	synonymous SNV	Sycp1:NM_011516:exon27:c.A2253G:p.G751G	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.389669806	3	0.9999865	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	143	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999898	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	103928888	12A2p6	cell line	sgMsh2	103928888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	exonic	Rsbn1	nonsynonymous SNV	"Rsbn1:NM_001356556:exon2:c.T1241C:p.I414T,Rsbn1:NM_001356557:exon2:c.T1235C:p.I412T,Rsbn1:NM_001356558:exon2:c.T1241C:p.I414T,Rsbn1:NM_172684:exon2:c.T1241C:p.I414T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999313	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	104051031	12A2p6	cell line	sgMsh2	104051031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	261	0	0	NA	exonic	Magi3	synonymous SNV	"Magi3:NM_001159354:exon10:c.A1737G:p.L579L,Magi3:NM_133853:exon10:c.A1737G:p.L579L"	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	4.35E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr3	104085353	12A2p6	cell line	sgMsh2	104085353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	191	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon5:c.T802G:p.C268G,Magi3:NM_133853:exon5:c.T802G:p.C268G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	124	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999627	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	262	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	4.13E-09	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	107213508	12A2p6	cell line	sgMsh2	107213508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	87	0	0	NA	exonic	Cym	synonymous SNV	Cym:NM_001111143:exon7:c.T780C:p.G260G	3qF2.3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995388	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr3	108377411	12A2p6	cell line	sgMsh2	108377411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	110	0	0	NA	exonic	Mybphl	nonsynonymous SNV	Mybphl:NM_026831:exon7:c.A973G:p.S325G	3qF3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999034	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	150	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9996326	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	115122270	12A2p6	cell line	sgMsh2	115122270	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	140	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.T751A:p.Y251N,Olfm3:NM_153157:exon6:c.T850A:p.Y284N,Olfm3:NM_153458:exon6:c.T790A:p.Y264N"	3qF3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999874	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	115122750	12A2p6	cell line	sgMsh2	115122750	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	464	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.C1231T:p.L411F,Olfm3:NM_153157:exon6:c.C1330T:p.L444F,Olfm3:NM_153458:exon6:c.C1270T:p.L424F"	3qF3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	1.96E-09	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	116891951	12A2p6	cell line	sgMsh2	116891951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	396	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon9:c.T970C:p.Y324H,Frrs1:NM_009146:exon9:c.T970C:p.Y324H"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	121761416	12A2p6	cell line	sgMsh2	121761416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	283	0	0	NA	exonic	Abcd3	nonsynonymous SNV	"Abcd3:NM_001355756:exon22:c.A1682G:p.E561G,Abcd3:NM_008991:exon22:c.A1901G:p.E634G"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.75E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	121992888	12A2p6	cell line	sgMsh2	121992888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	126	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.A1101G:p.Q367Q,Arhgap29:NM_172525:exon11:c.A1101G:p.Q367Q"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	AAC	synonymous	AACA	9	AACAAACAA	NA
M3_p20	chr3	121992907	12A2p6	cell line	sgMsh2	121992907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	114	0	0	NA	exonic	Arhgap29	synonymous SNV	"Arhgap29:NM_001356524:exon11:c.T1120C:p.L374L,Arhgap29:NM_172525:exon11:c.T1120C:p.L374L"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9998573	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr3	122141699	12A2p6	cell line	sgMsh2	122141699	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	412	0	0	NA	exonic	Abca4	synonymous SNV	Abca4:NM_007378:exon31:c.G4545A:p.Q1515Q	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr3	122275474	12A2p6	cell line	sgMsh2	122275474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	191	0	0	NA	exonic	Dnttip2	nonsynonymous SNV	Dnttip2:NM_153806:exon2:c.A337G:p.T113A	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	123374841	12A2p6	cell line	sgMsh2	123374841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	185	0	0	NA	exonic	Mettl14	synonymous SNV	Mettl14:NM_201638:exon7:c.A549G:p.T183T	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	127	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999696	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	124413820	12A2p6	cell line	sgMsh2	124413820	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	115	0	0	NA	exonic	1700006A11Rik	frameshift deletion	"1700006A11Rik:NM_001357195:exon6:c.505delT:p.S169Pfs*2,1700006A11Rik:NM_027939:exon7:c.721delT:p.S241Pfs*2"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.872328997	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr3	125438267	12A2p6	cell line	sgMsh2	125438267	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	140	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A484C:p.I162L	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999874	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	126834575	12A2p6	cell line	sgMsh2	126834575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	491	0	0	NA	exonic	Camk2d	synonymous SNV	"Camk2d:NM_001025438:exon15:c.A1035G:p.A345A,Camk2d:NM_023813:exon15:c.A1035G:p.A345A,Camk2d:NM_001293664:exon16:c.A1077G:p.A359A,Camk2d:NM_001293665:exon16:c.A639G:p.A213A,Camk2d:NM_001025439:exon17:c.A1137G:p.A379A,Camk2d:NM_001293663:exon17:c.A1137G:p.A379A,Camk2d:NM_001346635:exon17:c.A1137G:p.A379A,Camk2d:NM_001346636:exon17:c.A1137G:p.A379A"	3qG1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	1.00E-09	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.3	117	0	0	NA	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	160	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999968	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	132178080	12A2p6	cell line	sgMsh2	132178080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	252	0	0	NA	exonic	Dkk2	nonsynonymous SNV	Dkk2:NM_020265:exon4:c.A740G:p.Y247C	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.854616733	1	0.9982619	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	132715641	12A2p6	cell line	sgMsh2	132715641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	225	0	0	NA	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon6:c.A508G:p.T170A	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.801479941	1	0.8540568	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	132885813	12A2p6	cell line	sgMsh2	132885813	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	104	0	0	NA	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1545A:p.N515K,Npnt:NM_001287103:exon11:c.T1233A:p.N411K,Npnt:NM_001287102:exon12:c.T1638A:p.N546K,Npnt:NM_033525:exon12:c.T1596A:p.N532K,Npnt:NM_001287101:exon13:c.T1689A:p.N563K"	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	0.9991989	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	145	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9993002	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	137865619	12A2p6	cell line	sgMsh2	137865619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	149	0	0	NA	exonic	H2az1	nonsynonymous SNV	"H2az1:NM_001316995:exon3:c.T181C:p.Y61H,H2az1:NM_016750:exon3:c.T181C:p.Y61H"	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999932	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	138148506	12A2p6	cell line	sgMsh2	138148506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	167	0	0	NA	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon3:c.T344C:p.V115A,Trmt10a:NM_175389:exon3:c.T344C:p.V115A,Trmt10a:NM_001348197:exon4:c.T344C:p.V115A"	3qG3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.916609657	1	0.999764	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	139015582	12A2p6	cell line	sgMsh2	139015582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	339	0	0	NA	exonic	Rap1gds1	nonsynonymous SNV	"Rap1gds1:NM_001040690:exon4:c.A325G:p.T109A,Rap1gds1:NM_001286759:exon4:c.A325G:p.T109A,Rap1gds1:NM_001356388:exon4:c.A325G:p.T109A,Rap1gds1:NM_145544:exon4:c.A325G:p.T109A"	3qH1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	139298464	12A2p6	cell line	sgMsh2	139298464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	270	0	0	NA	exonic	Stpg2	nonsynonymous SNV	Stpg2:NM_198659:exon7:c.G801A:p.M267I	3qH1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9998381	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	139419798	12A2p6	cell line	sgMsh2	139419798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	122	0	0	NA	exonic	Stpg2	frameshift deletion	Stpg2:NM_198659:exon11:c.1351delA:p.R453Gfs*5	3qH1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr3	142312189	12A2p6	cell line	sgMsh2	142312189	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	275	0	0	NA	exonic	Pdlim5	nonsynonymous SNV	"Pdlim5:NM_001190857:exon4:c.A317C:p.E106A,Pdlim5:NM_022554:exon4:c.A317C:p.E106A,Pdlim5:NM_001190852:exon5:c.A317C:p.E106A,Pdlim5:NM_001190854:exon5:c.A317C:p.E106A,Pdlim5:NM_001190855:exon5:c.A317C:p.E106A,Pdlim5:NM_001190856:exon5:c.A317C:p.E106A,Pdlim5:NM_019808:exon5:c.A644C:p.E215A,Pdlim5:NM_019809:exon5:c.A644C:p.E215A"	3qH1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	2.29E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	142618173	12A2p6	cell line	sgMsh2	142618173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	287	0	0	NA	exonic	Gbp2b	nonsynonymous SNV	Gbp2b:NM_010259:exon11:c.A1738G:p.M580V	3qH1	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.5065248	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	145016846	12A2p6	cell line	sgMsh2	145016846	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	77	0	0	NA	exonic	Clca1	frameshift deletion	Clca1:NM_017474:exon6:c.764delA:p.N255Ifs*34	3qH2	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3_p20	chr3	148890507	12A2p6	cell line	sgMsh2	148890507	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	387	0	0	NA	exonic	Adgrl2	synonymous SNV	Adgrl2:NM_001081298:exon2:c.C192T:p.Y64Y	3qH3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CGT	synonymous	NA	NA	NA	NA
M3_p20	chr3	153509458	12A2p6	cell line	sgMsh2	153509458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	188	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon2:c.A58G:p.I20V	3qH3	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	154727461	12A2p6	cell line	sgMsh2	154727461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	187	0	0	NA	exonic	Erich3	synonymous SNV	Erich3:NM_175176:exon4:c.G480A:p.G160G	3qH4	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.766055413	2	0.6230064	GGA	synonymous	NA	NA	NA	NA
M3_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	165	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.974174514	1	0.9999901	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr3	155055306	12A2p6	cell line	sgMsh2	155055306	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	232	0	0	NA	exonic	Tnni3k	frameshift deletion	Tnni3k:NM_177066:exon1:c.1delA:p.M1Wfs*26	3qH4	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	0.859044799	NA	NA	ATT	frameshift	NA	NA	NA	-1
M3_p20	chr3	158318471	12A2p6	cell line	sgMsh2	158318471	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	311	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon4:c.C385A:p.L129I,Lrrc7:NM_001370782:exon4:c.C385A:p.L129I,Lrrc7:NM_001081358:exon5:c.C286A:p.L96I,Lrrc7:NM_001291452:exon5:c.C286A:p.L96I,Lrrc7:NM_001291453:exon5:c.C286A:p.L96I"	3qH4	chr3-10012637-159913826	4	2	2	0.91	4.029540036	NA	1	1	1	1.11E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	6272402	12A2p6	cell line	sgMsh2	6272402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	157	0	0	NA	exonic	Cyp7a1	synonymous SNV	Cyp7a1:NM_007824:exon3:c.T810C:p.F270F	4qA1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr4	13743716	12A2p6	cell line	sgMsh2	13743716	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	20	0	0	NA	exonic	Runx1t1	synonymous SNV	Runx1t1:NM_001111026:exon1:c.C15T:p.S5S	4qA1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9579057	CCA	synonymous	NA	NA	NA	NA
M3_p20	chr4	14524524	12A2p6	cell line	sgMsh2	14524524	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	161	0	0	NA	exonic	Slc26a7	synonymous SNV	Slc26a7:NM_145947:exon12:c.C1359A:p.A453A	4qA1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999997	TGG	synonymous	NA	NA	NA	NA
M3_p20	chr4	14548485	12A2p6	cell line	sgMsh2	14548485	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	278	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon7:c.C803T:p.A268V	4qA1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	2.06E-09	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	14913763	12A2p6	cell line	sgMsh2	14913763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	360	0	0	NA	exonic	Pip4p2	nonsynonymous SNV	Pip4p2:NM_028264:exon7:c.T670A:p.Y224N	4qA2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	18054546	12A2p6	cell line	sgMsh2	18054546	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	47	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon6:c.G1051T:p.A351S,Mmp16:NM_001379518:exon7:c.G1051T:p.A351S,Mmp16:NM_001379519:exon7:c.G1051T:p.A351S"	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9930451	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	97	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997663	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	163	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999974	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	225	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	3.98E-08	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	110	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr4	32017058	12A2p6	cell line	sgMsh2	32017058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	85	0	0	NA	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_172688:exon15:c.T1465C:p.S489P,Map3k7:NM_009316:exon16:c.T1546C:p.S516P"	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9994717	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	32725960	12A2p6	cell line	sgMsh2	32725960	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	126	0	0	NA	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon51:c.7878delA:p.N2627Tfs*25	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3_p20	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	167	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999998	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	33246353	12A2p6	cell line	sgMsh2	33246353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	72	0	0	NA	exonic	Pnrc1	nonsynonymous SNV	Pnrc1:NM_001033225:exon2:c.A605C:p.E202A	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9987222	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	34565153	12A2p6	cell line	sgMsh2	34565153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	211	0	0	NA	exonic	Akirin2	synonymous SNV	Akirin2:NM_001007589:exon3:c.A399G:p.P133P	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CAT	synonymous	A	5	AAAAA	NA
M3_p20	chr4	34572529	12A2p6	cell line	sgMsh2	34572529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	115	0	0	NA	exonic	Orc3	nonsynonymous SNV	"Orc3:NM_001159563:exon18:c.T1895C:p.I632T,Orc3:NM_015824:exon18:c.T1898C:p.I633T"	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999313	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	188	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999995	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	34816365	12A2p6	cell line	sgMsh2	34816365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	151	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon7:c.T923C:p.V308A	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999941	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	39451103	12A2p6	cell line	sgMsh2	39451103	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	101	0	0	NA	exonic	1700009N14Rik	nonsynonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A308C:p.N103T	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999822	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	43022109	12A2p6	cell line	sgMsh2	43022109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	82	0	0	NA	exonic	Pigo	nonsynonymous SNV	"Pigo:NM_020035:exon5:c.A1049G:p.E350G,Pigo:NM_001305386:exon6:c.A1025G:p.E342G,Pigo:NM_001305387:exon6:c.A1025G:p.E342G"	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993522	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	43449514	12A2p6	cell line	sgMsh2	43449514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	157	0	0	NA	exonic	Cd72	synonymous SNV	"Cd72:NM_001110322:exon5:c.C690T:p.S230S,Cd72:NM_001110321:exon6:c.C801T:p.S267S,Cd72:NM_001110320:exon7:c.C873T:p.S291S,Cd72:NM_007654:exon7:c.C852T:p.S284S"	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999996	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr4	43507096	12A2p6	cell line	sgMsh2	43507096	C	-	Deletion	Strelka2;Vardict	2	0.3529	17	0	0	NA	exonic	Car9	frameshift deletion	Car9:NM_139305:exon1:c.41delC:p.P15Qfs*78	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3_p20	chr4	43548119	12A2p6	cell line	sgMsh2	43548119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	47	0	0	NA	exonic	Tln1	nonsynonymous SNV	Tln1:NM_011602:exon18:c.G2023A:p.V675M	4qA5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9930451	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	45043611	12A2p6	cell line	sgMsh2	45043611	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.47	24	0	0	NA	exonic	Fbxo10	frameshift deletion	"Fbxo10:NM_001378820:exon8:c.1650delC:p.T551Hfs*24,Fbxo10:NM_001378821:exon8:c.2211delC:p.T738Hfs*24"	4qB1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3_p20	chr4	45399900	12A2p6	cell line	sgMsh2	45399900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.161	203	0	0	NA	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.T238C:p.L80L	4qB1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.712918622	2	0.9877613	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr4	46007511	12A2p6	cell line	sgMsh2	46007511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	193	0	0	NA	exonic	Tdrd7	nonsynonymous SNV	"Tdrd7:NM_001290475:exon8:c.A1562C:p.E521A,Tdrd7:NM_001355189:exon8:c.A1463C:p.E488A,Tdrd7:NM_146142:exon8:c.A1463C:p.E488A"	4qB1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999997	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	53040735	12A2p6	cell line	sgMsh2	53040735	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	100	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon44:c.T5911G:p.F1971V	4qB2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998094	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	53543568	12A2p6	cell line	sgMsh2	53543568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	109	0	0	NA	exonic	Slc44a1	nonsynonymous SNV	"Slc44a1:NM_001159633:exon10:c.T1111G:p.F371V,Slc44a1:NM_001374697:exon10:c.T1111G:p.F371V,Slc44a1:NM_133891:exon10:c.T1111G:p.F371V"	4qB2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998967	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	139	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999866	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	58486775	12A2p6	cell line	sgMsh2	58486775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	85	0	0	NA	exonic	Lpar1	synonymous SNV	"Lpar1:NM_001290486:exon2:c.G441T:p.V147V,Lpar1:NM_010336:exon3:c.G495T:p.V165V,Lpar1:NM_172989:exon3:c.G495T:p.V165V"	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9994717	CCA	synonymous	CAC	12	CACCACCACCAC	NA
M3_p20	chr4	58824277	12A2p6	cell line	sgMsh2	58824277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	123	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon30:c.T3357C:p.P1119P,Ecpas:NM_172381:exon30:c.T3339C:p.P1113P,Ecpas:NM_001355697:exon31:c.T3339C:p.P1113P"	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999601	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr4	58872682	12A2p6	cell line	sgMsh2	58872682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	49	0	0	NA	exonic	Ecpas	synonymous SNV	"Ecpas:NM_001355696:exon6:c.T636C:p.G212G,Ecpas:NM_172381:exon6:c.T618C:p.G206G,Ecpas:NM_001355697:exon7:c.T618C:p.G206G"	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9939241	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	59022628	12A2p6	cell line	sgMsh2	59022628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	61	0	0	NA	exonic	Dnajc25	nonsynonymous SNV	Dnajc25:NM_001033165:exon4:c.A1019G:p.Y340C	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9973041	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	59048124	12A2p6	cell line	sgMsh2	59048124	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	166	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon27:c.A3494C:p.K1165T	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999979	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	59524445	12A2p6	cell line	sgMsh2	59524445	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	81	0	0	NA	exonic	Ptbp3	nonsynonymous SNV	Ptbp3:NM_144904:exon3:c.T74A:p.V25D	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9993067	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	63309609	12A2p6	cell line	sgMsh2	63309609	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	20	0	0	NA	exonic	Col27a1	nonsynonymous SNV	Col27a1:NM_025685:exon37:c.C3652T:p.P1218S	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9579057	CCC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	201	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	63851155	12A2p6	cell line	sgMsh2	63851155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	145	0	0	NA	exonic	Tnfsf8	nonsynonymous SNV	Tnfsf8:NM_009403:exon2:c.C218T:p.T73I	4qC1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999911	AGT	nonsynonymous	TGGAG	11	TGGAGTGGAGT	NA
M3_p20	chr4	64007763	12A2p6	cell line	sgMsh2	64007763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	72	0	0	NA	exonic	Tnc	nonsynonymous SNV	"Tnc:NM_001369213:exon7:c.T1996C:p.Y666H,Tnc:NM_001369211:exon8:c.T2779C:p.Y927H,Tnc:NM_001369212:exon8:c.T2779C:p.Y927H,Tnc:NM_001369214:exon8:c.T2779C:p.Y927H,Tnc:NM_011607:exon8:c.T2779C:p.Y927H"	4qC1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9987222	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	65204930	12A2p6	cell line	sgMsh2	65204930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	173	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon7:c.T2501C:p.I834T	4qC1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999987	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	68826849	12A2p6	cell line	sgMsh2	68826849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	155	0	0	NA	exonic	Brinp1	synonymous SNV	Brinp1:NM_019967:exon5:c.C652T:p.L218L	4qC1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.996314844	1	0.9999945	AGA	synonymous	NA	NA	NA	NA
M3_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	113	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999213	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr4	70317460	12A2p6	cell line	sgMsh2	70317460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	179	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon10:c.A624G:p.T208T,Cdk5rap2:NM_145990:exon13:c.A1443G:p.T481T"	4qC2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999991	CTG	synonymous	ACTGCC	12	ACTGCCACTGCC	NA
M3_p20	chr4	72852198	12A2p6	cell line	sgMsh2	72852198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	274	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.T372A:p.R124R	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	2.39E-09	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	74170660	12A2p6	cell line	sgMsh2	74170660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	106	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon13:c.A1093G:p.S365G,Frmd3:NM_172869:exon13:c.A1093G:p.S365G"	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.912181591	1	0.9969363	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	75956378	12A2p6	cell line	sgMsh2	75956378	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon24:c.G3815T:p.R1272M,Ptprd:NM_001352629:exon25:c.G3827T:p.R1276M,Ptprd:NM_001352630:exon25:c.G3824T:p.R1275M,Ptprd:NM_001368993:exon25:c.G3854T:p.R1285M,Ptprd:NM_001352628:exon26:c.G3866T:p.R1289M,Ptprd:NM_001368991:exon35:c.G3839T:p.R1280M,Ptprd:NM_011211:exon35:c.G3842T:p.R1281M"	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.97860258	1	0.9998304	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	83263748	12A2p6	cell line	sgMsh2	83263748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	198	0	0	NA	exonic	Ttc39b	nonsynonymous SNV	Ttc39b:NM_027238:exon4:c.T233C:p.L78P	4qC3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	84973993	12A2p6	cell line	sgMsh2	84973993	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	52	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon7:c.G1114A:p.V372I	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9950397	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	86087731	12A2p6	cell line	sgMsh2	86087731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	141	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_001368621:exon2:c.A86G:p.E29G,Adamtsl1:NM_029967:exon2:c.A86G:p.E29G"	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999883	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	86585367	12A2p6	cell line	sgMsh2	86585367	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	52	0	0	NA	exonic	Haus6	nonsynonymous SNV	Haus6:NM_173400:exon15:c.T1720A:p.L574I	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9950397	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	88408934	12A2p6	cell line	sgMsh2	88408934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	375	0	0	NA	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon43:c.T5261C:p.L1754P	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	88820339	12A2p6	cell line	sgMsh2	88820339	G	-	Deletion	Strelka2;Vardict	2	0.4744	312	0	0	NA	exonic	Ifna11	frameshift deletion	Ifna11:NM_008333:exon1:c.381delG:p.V129Cfs*5	4qC4	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr4	91399449	12A2p6	cell line	sgMsh2	91399449	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	155	0	0	NA	exonic	Elavl2	nonsynonymous SNV	Elavl2:NM_207685:exon2:c.G16A:p.E6K	4qC5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999955	TCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	95812157	12A2p6	cell line	sgMsh2	95812157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	215	0	0	NA	exonic	Fggy	nonsynonymous SNV	"Fggy:NM_001113412:exon10:c.A1064G:p.K355R,Fggy:NM_029347:exon10:c.A1064G:p.K355R"	4qC5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.996314844	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	96503958	12A2p6	cell line	sgMsh2	96503958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	212	0	0	NA	exonic	Cyp2j8	synonymous SNV	Cyp2j8:NM_001104927:exon2:c.T258C:p.G86G	4qC5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	96545806	12A2p6	cell line	sgMsh2	96545806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	282	0	0	NA	exonic	Cyp2j6	nonsynonymous SNV	Cyp2j6:NM_010008:exon2:c.T266C:p.V89A	4qC5	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.80E-09	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	98020925	12A2p6	cell line	sgMsh2	98020925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	132	0	0	NA	exonic	Nfia	nonsynonymous SNV	"Nfia:NM_001122952:exon6:c.A986G:p.Q329R,Nfia:NM_001122953:exon6:c.A917G:p.Q306R,Nfia:NM_010905:exon6:c.A917G:p.Q306R"	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999784	CAG	nonsynonymous	CCAGT	10	CCAGTCCAGT	NA
M3_p20	chr4	98944672	12A2p6	cell line	sgMsh2	98944672	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	214	0	0	NA	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_026082:exon45:c.C5947T:p.L1983F,Dock7:NM_001290636:exon46:c.C6037T:p.L2013F,Dock7:NM_001369285:exon46:c.C5953T:p.L1985F,Dock7:NM_001369286:exon47:c.C6043T:p.L2015F"	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	91	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9996486	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M3_p20	chr4	102595966	12A2p6	cell line	sgMsh2	102595966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	145	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon3:c.A358G:p.T120A,Pde4b:NM_001177981:exon3:c.A175G:p.T59A,Pde4b:NM_001177982:exon3:c.A118G:p.T40A,Pde4b:NM_001374780:exon8:c.A643G:p.T215A,Pde4b:NM_019840:exon8:c.A829G:p.T277A"	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999911	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	103072833	12A2p6	cell line	sgMsh2	103072833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	89	0	0	NA	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon8:c.T960C:p.S320S	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9995975	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	103143160	12A2p6	cell line	sgMsh2	103143160	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	106	0	0	NA	exonic	Mier1	nonsynonymous SNV	"Mier1:NM_001039081:exon7:c.A564C:p.Q188H,Mier1:NM_001286223:exon7:c.A561C:p.Q187H,Mier1:NM_001286221:exon9:c.A699C:p.Q233H,Mier1:NM_001286222:exon9:c.A615C:p.Q205H,Mier1:NM_027696:exon9:c.A615C:p.Q205H"	4qC6	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998733	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	107060585	12A2p6	cell line	sgMsh2	107060585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	70	0	0	NA	exonic	Mrpl37	nonsynonymous SNV	Mrpl37:NM_025500:exon5:c.G888T:p.K296N	4qC7	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9985363	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	108008226	12A2p6	cell line	sgMsh2	108008226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	112	0	0	NA	exonic	Slc1a7	nonsynonymous SNV	Slc1a7:NM_146255:exon7:c.T880C:p.F294L	4qC7	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999157	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	108021456	12A2p6	cell line	sgMsh2	108021456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	148	0	0	NA	exonic	Podn	nonsynonymous SNV	"Podn:NM_001285956:exon10:c.T1213C:p.Y405H,Podn:NM_001285958:exon10:c.T1213C:p.Y405H,Podn:NM_172874:exon10:c.T1213C:p.Y405H"	4qC7	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999927	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	108826109	12A2p6	cell line	sgMsh2	108826109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	340	0	0	NA	exonic	Btf3l4	synonymous SNV	"Btf3l4:NM_001356361:exon3:c.T159C:p.G53G,Btf3l4:NM_027453:exon3:c.T159C:p.G53G"	4qC7	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.02E-09	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	112298156	12A2p6	cell line	sgMsh2	112298156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	193	0	0	NA	exonic	Skint3	nonsynonymous SNV	"Skint3:NM_177578:exon8:c.A1110G:p.I370M,Skint3:NM_001348354:exon9:c.A978G:p.I326M,Skint3:NM_001102474:exon10:c.A1326G:p.I442M"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	241	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.41E-08	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr4	112728889	12A2p6	cell line	sgMsh2	112728889	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	67	0	0	NA	exonic	Skint10	stopgain	Skint10:NM_177668:exon4:c.G529T:p.G177X	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9982057	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	113004506	12A2p6	cell line	sgMsh2	113004506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	309	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon23:c.T1853C:p.M618T	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.13E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	113483888	12A2p6	cell line	sgMsh2	113483888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	254	0	0	NA	exonic	Skint5	nonsynonymous SNV	"Skint5:NM_001167878:exon56:c.T4150C:p.Y1384H,Skint5:NM_001167876:exon57:c.T4213C:p.Y1405H"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	6.40E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	113571596	12A2p6	cell line	sgMsh2	113571596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon43:c.T3180C:p.S1060S,Skint5:NM_001167878:exon43:c.T3180C:p.S1060S"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995692	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	115014223	12A2p6	cell line	sgMsh2	115014223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	177	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon8:c.A311G:p.N104S,Stil:NM_001304555:exon9:c.A989G:p.N330S,Stil:NM_001304559:exon9:c.A989G:p.N330S,Stil:NM_009185:exon9:c.A989G:p.N330S"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999999	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	115496100	12A2p6	cell line	sgMsh2	115496100	A	-	Deletion	Strelka2;Vardict	2	0.16	50	0	0	NA	exonic	Cyp4a14	frameshift deletion	Cyp4a14:NM_007822:exon1:c.14delT:p.L5Yfs*59	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.708490556	NA	NA	TAA	frameshift	TAAA	8	TAAATAAA	-1
M3_p20	chr4	115866539	12A2p6	cell line	sgMsh2	115866539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	163	0	0	NA	exonic	Mknk1	nonsynonymous SNV	"Mknk1:NM_001355174:exon7:c.A430G:p.T144A,Mknk1:NM_001369238:exon7:c.A430G:p.T144A,Mknk1:NM_021461:exon7:c.A430G:p.T144A,Mknk1:NM_001285488:exon8:c.A430G:p.T144A,Mknk1:NM_001285487:exon9:c.A448G:p.T150A"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999974	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	116327723	12A2p6	cell line	sgMsh2	116327723	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	137	0	0	NA	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon8:c.T791G:p.F264C,Mast2:NM_008641:exon8:c.T791G:p.F264C,Mast2:NM_001042743:exon9:c.T812G:p.F271C,Mast2:NM_001369061:exon9:c.T812G:p.F271C"	4qD1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999846	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	118211472	12A2p6	cell line	sgMsh2	118211472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	69	0	0	NA	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon29:c.T5098C:p.Y1700H	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9984335	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	118385860	12A2p6	cell line	sgMsh2	118385860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	38	0	0	NA	exonic	Szt2	nonsynonymous SNV	Szt2:NM_198170:exon29:c.A4300G:p.I1434V	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9872491	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	118734571	12A2p6	cell line	sgMsh2	118734571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	147	0	0	NA	exonic	Olfr1339	nonsynonymous SNV	Olfr1339:NM_146852:exon1:c.A41G:p.E14G	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999922	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	174	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9999988	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	119478012	12A2p6	cell line	sgMsh2	119478012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	49	0	0	NA	exonic	Rimkla	nonsynonymous SNV	Rimkla:NM_177572:exon2:c.T173C:p.L58P	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9939241	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	120096995	12A2p6	cell line	sgMsh2	120096995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	22	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A2507G:p.Q836R	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	9.79E-06	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	120098500	12A2p6	cell line	sgMsh2	120098500	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	153	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.A4012C:p.T1338P	4qD2.1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999948	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	120535763	12A2p6	cell line	sgMsh2	120535763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	59	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon4:c.C1051T:p.R351C	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9969126	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	173	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999987	CAG	synonymous	GT	8	GTGTGTGT	NA
M3_p20	chr4	123471072	12A2p6	cell line	sgMsh2	123471072	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	110	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.T9895C:p.F3299L	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	123475869	12A2p6	cell line	sgMsh2	123475870	AT	TC	DBS	Mutect2;Vardict	2	0.249	146	0	0	NA	exonic	Macf1	nonframeshift substitution	Macf1:NM_001199136:exon36:c.5097_5098GA:p.S1700T	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	141	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999883	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	99	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999796	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr4	126832123	12A2p6	cell line	sgMsh2	126832123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	67	0	0	NA	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon9:c.A1325G:p.H442R,AU040320:NM_001035526:exon9:c.A1325G:p.H442R,AU040320:NM_133886:exon9:c.A1325G:p.H442R,AU040320:NM_001355196:exon11:c.A1262G:p.H421R"	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9982057	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	127048748	12A2p6	cell line	sgMsh2	127048748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	190	0	0	NA	exonic	Zmym1	nonsynonymous SNV	"Zmym1:NM_026670:exon8:c.T1846C:p.F616L,Zmym1:NM_001356311:exon9:c.T1630C:p.F544L"	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	134	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999811	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	128475742	12A2p6	cell line	sgMsh2	128475742	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	151	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon36:c.A5666C:p.E1889A	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999941	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	128534263	12A2p6	cell line	sgMsh2	128534263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	151	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon56:c.C8806T:p.R2936C	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999941	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	65	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9979448	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr4	129076254	12A2p6	cell line	sgMsh2	129076254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	127	0	0	NA	exonic	Rnf19b	synonymous SNV	"Rnf19b:NM_001368763:exon5:c.A1233G:p.P411P,Rnf19b:NM_029219:exon5:c.A1230G:p.P410P"	4qD2.2	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999696	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	25	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9696818	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	133693973	12A2p6	cell line	sgMsh2	133693973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	97	0	0	NA	exonic	Arid1a	synonymous SNV	"Arid1a:NM_001080819:exon8:c.T2520G:p.G840G,Arid1a:NM_001363070:exon8:c.T1365G:p.G455G"	4qD2.3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9997663	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	167	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.999998	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	134362714	12A2p6	cell line	sgMsh2	134362714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	68	0	0	NA	exonic	Extl1	nonsynonymous SNV	"Extl1:NM_001355493:exon5:c.T275C:p.I92T,Extl1:NM_019578:exon5:c.T1082C:p.I361T"	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9983234	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	137543941	12A2p6	cell line	sgMsh2	137543941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	55	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon57:c.A7388G:p.H2463R	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9959514	CAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr4	137548079	12A2p6	cell line	sgMsh2	137548079	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	110	0	0	NA	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon63:c.A8217G:p.G2739G	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999034	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	138289303	12A2p6	cell line	sgMsh2	138289303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	143	0	0	NA	exonic	Kif17	synonymous SNV	"Kif17:NM_001190978:exon7:c.T1296C:p.A432A,Kif17:NM_010623:exon9:c.T2007C:p.A669A"	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999898	CTG	synonymous	TGTGGC	14	TGTGGCTGTGGCTG	NA
M3_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	67	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3_p20	chr4	140748198	12A2p6	cell line	sgMsh2	140748198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	78	0	0	NA	exonic	Padi4	nonsynonymous SNV	Padi4:NM_011061:exon15:c.T1655C:p.L552P	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9991499	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	140932083	12A2p6	cell line	sgMsh2	140932083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	33	0	0	NA	exonic	Padi2	nonsynonymous SNV	Padi2:NM_008812:exon7:c.G698A:p.R233H	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9821776	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	141046782	12A2p6	cell line	sgMsh2	141046782	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.391	24	0	0	NA	exonic	Crocc	nonsynonymous SNV	Crocc:NM_172122:exon5:c.A617G:p.Q206R	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9676163	CTG	nonsynonymous	GCT	9	GCTGCTGCT	NA
M3_p20	chr4	141395708	12A2p6	cell line	sgMsh2	141395708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	91	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon4:c.T386C:p.M129T,Clcnka:NM_024412:exon5:c.T386C:p.M129T"	4qD3	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9996486	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	141642733	12A2p6	cell line	sgMsh2	141642733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	49	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001033150:exon2:c.T84C:p.C28C,Plekhm2:NM_001347237:exon2:c.T84C:p.C28C"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9939241	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr4	143132648	12A2p6	cell line	sgMsh2	143132648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	134	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.T4071C:p.P1357P,Prdm2:NM_001256380:exon8:c.T4071C:p.P1357P"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999811	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr4	143810741	12A2p6	cell line	sgMsh2	143810741	G	A	SNV	Mutect2;Strelka2	2	0.134	120	0	0	NA	exonic	Pramel26	nonsynonymous SNV	"Pramel26:NM_001005371:exon4:c.C1019T:p.T340I,Pramel26:NM_001347257:exon4:c.C1019T:p.T340I"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.593360841	2	0.9988641	AGT	nonsynonymous	TCAG	8	TCAGTCAG	NA
M3_p20	chr4	144332663	12A2p6	cell line	sgMsh2	144332663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	311	0	0	NA	exonic	Pramel30	nonsynonymous SNV	Pramel30:NM_001085541:exon3:c.T943C:p.W315R	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.11E-09	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	144373277	12A2p6	cell line	sgMsh2	144373277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	147	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T917C:p.V306A	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.854616733	1	0.9883599	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	144555004	12A2p6	cell line	sgMsh2	144555004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	171	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.T1217C:p.I406T	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999985	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	144564983	12A2p6	cell line	sgMsh2	144564983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	192	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T152C:p.L51P	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	144565004	12A2p6	cell line	sgMsh2	144565004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	220	0	0	NA	exonic	Aadacl4fm2	nonsynonymous SNV	Aadacl4fm2:NM_001085542:exon1:c.T131C:p.M44T	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145045079	12A2p6	cell line	sgMsh2	145045079	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	103	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon64:c.G12221A:p.G4074D,Vps13d:NM_001276465:exon65:c.G12218A:p.G4073D"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	0.9998446	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145062653	12A2p6	cell line	sgMsh2	145062653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	133	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon59:c.T11492C:p.V3831A,Vps13d:NM_001276465:exon60:c.T11489C:p.V3830A"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	0.938749986	1	0.999671	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145154816	12A2p6	cell line	sgMsh2	145154816	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	74	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.C4206A:p.H1402Q,Vps13d:NM_001276465:exon19:c.C4206A:p.H1402Q"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	2	1	1	0.9988845	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145156045	12A2p6	cell line	sgMsh2	145156045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	237	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon18:c.T2977C:p.Y993H,Vps13d:NM_001276465:exon19:c.T2977C:p.Y993H"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	1.81E-08	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145170242	12A2p6	cell line	sgMsh2	145170242	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	221	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon9:c.T1107G:p.D369E,Vps13d:NM_001276465:exon10:c.T1107G:p.D369E"	4qE1	chr4-3172212-145468270	3	2	1	0.91	4.029540036	NA	1	1	1	5.19E-08	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	145536605	12A2p6	cell line	sgMsh2	145536605	C	T	SNV	Mutect2;Vardict	2	0.034	779	0	0	NA	exonic	Zfp990	nonsynonymous SNV	Zfp990:NM_001324553:exon4:c.C172T:p.R58C	4qE1	chr4-145530561-145701461	8.74913423	7.74913423	1	0.91	4.029540036	NA	1	0.150554243	3	1	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	148052574	12A2p6	cell line	sgMsh2	148052574	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	68	0	0	NA	exonic	Mthfr	stopgain	"Mthfr:NM_001161798:exon9:c.G1528T:p.E510X,Mthfr:NM_010840:exon9:c.G1405T:p.E469X"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9983234	AGA	nonsynonymous	GAAG	8	GAAGGAAG	NA
M3_p20	chr4	149469049	12A2p6	cell line	sgMsh2	149469049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	202	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A605G:p.D202G,Nmnat1:NM_133435:exon5:c.A605G:p.D202G"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	149469055	12A2p6	cell line	sgMsh2	149469055	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	207	0	0	NA	exonic	Nmnat1	nonsynonymous SNV	"Nmnat1:NM_001356357:exon5:c.A599T:p.E200V,Nmnat1:NM_133435:exon5:c.A599T:p.E200V"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	151017913	12A2p6	cell line	sgMsh2	151017913	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	125	0	0	NA	exonic	Per3	nonsynonymous SNV	"Per3:NM_001289877:exon15:c.C1892T:p.P631L,Per3:NM_011067:exon15:c.C1892T:p.P631L,Per3:NM_001289878:exon16:c.C950T:p.P317L"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999652	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	152435809	12A2p6	cell line	sgMsh2	152435809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	22	0	0	NA	exonic	Kcnab2	nonsynonymous SNV	"Kcnab2:NM_001252654:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252655:exon2:c.T73C:p.Y25H,Kcnab2:NM_001252656:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355172:exon2:c.T73C:p.Y25H,Kcnab2:NM_001355173:exon2:c.T73C:p.Y25H,Kcnab2:NM_010598:exon2:c.T73C:p.Y25H"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	9.79E-06	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	153386480	12A2p6	cell line	sgMsh2	153386480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	146	0	0	NA	exonic	Ajap1	nonsynonymous SNV	Ajap1:NM_001099299:exon3:c.T869C:p.V290A	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999917	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	88	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	1	1	0.9995692	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	155747330	12A2p6	cell line	sgMsh2	155747330	C	T	SNV	Mutect2;Vardict	2	0.093	43	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon14:c.G1486A:p.A496T	4qE2	chr4-146067868-156223608	3	2	1	0.91	4.029540036	NA	1	0.411810136	2	0.6943464	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr4	156224815	12A2p6	cell line	sgMsh2	156224815	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.35	87	0	0	NA	exonic	Plekhn1	frameshift deletion	"Plekhn1:NM_001008233:exon7:c.633delC:p.W212Gfs*12,Plekhn1:NM_001368639:exon7:c.633delC:p.W212Gfs*12"	4qE2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr5	3565724	12A2p6	cell line	sgMsh2	3565724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	242	0	0	NA	exonic	Fam133b	nonsynonymous SNV	Fam133b:NM_001042501:exon10:c.A625G:p.S209G	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.32E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	3571771	12A2p6	cell line	sgMsh2	3571771	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	107	0	0	NA	exonic	1700109H08Rik	frameshift deletion	1700109H08Rik:NM_029843:exon1:c.19delA:p.M9Wfs*54	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr5	4060413	12A2p6	cell line	sgMsh2	4060413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	97	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon37:c.A9115G:p.S3039G	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997663	AAG	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr5	6769089	12A2p6	cell line	sgMsh2	6769089	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	223	0	0	NA	exonic	Zfp804b	stopgain	Zfp804b:NM_001163223:exon4:c.C3973T:p.Q1325X	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	4.54E-08	TGG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3_p20	chr5	6770614	12A2p6	cell line	sgMsh2	6770614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	72	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A2448G:p.K816K	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.770483479	1	0.7313368	GTT	synonymous	G	5	GGGGG	NA
M3_p20	chr5	7305026	12A2p6	cell line	sgMsh2	7305026	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	321	0	0	NA	exonic	Tex47	frameshift deletion	Tex47:NM_027603:exon2:c.206delA:p.Y69Lfs*7	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAT	frameshift	NA	NA	NA	-1
M3_p20	chr5	7305531	12A2p6	cell line	sgMsh2	7305531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	77	0	0	NA	exonic	Tex47	nonsynonymous SNV	Tex47:NM_027603:exon2:c.A711G:p.I237M	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9990902	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	9445497	12A2p6	cell line	sgMsh2	9445497	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.227	278	0	0	NA	exonic	Elapor2	nonsynonymous SNV	"Elapor2:NM_001359885:exon15:c.A1961G:p.K654R,Elapor2:NM_001359886:exon15:c.A1961G:p.K654R,Elapor2:NM_001359884:exon16:c.A2300G:p.K767R,Elapor2:NM_172706:exon16:c.A2300G:p.K767R"	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	2.06E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	9512195	12A2p6	cell line	sgMsh2	9512195	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	273	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.G1654A:p.G552S	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	2.48E-09	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	14712864	12A2p6	cell line	sgMsh2	14712864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	267	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.C11350T:p.P3784S,Pclo:NM_011995:exon7:c.C11350T:p.P3784S"	5qA1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	3.23E-09	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	20611186	12A2p6	cell line	sgMsh2	20611186	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	233	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon18:c.A3010C:p.R1004R,Magi2:NM_015823:exon19:c.A3052C:p.R1018R,Magi2:NM_001170746:exon20:c.A3541C:p.R1181R"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.845760601	1	0.9950359	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	20896303	12A2p6	cell line	sgMsh2	20896303	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	122	0	0	NA	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2238C:p.P746P	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999573	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	20998619	12A2p6	cell line	sgMsh2	20998619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	200	0	0	NA	exonic	Ptpn12	nonsynonymous SNV	"Ptpn12:NM_001356591:exon12:c.A803G:p.H268R,Ptpn12:NM_001356592:exon13:c.A803G:p.H268R,Ptpn12:NM_011203:exon13:c.A1160G:p.H387R,Ptpn12:NM_001356590:exon14:c.A1202G:p.H401R"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	21288609	12A2p6	cell line	sgMsh2	21288609	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	126	0	0	NA	exonic	Gsap	nonsynonymous SNV	"Gsap:NM_001359876:exon27:c.A2150C:p.N717T,Gsap:NM_175437:exon28:c.A2243C:p.N748T"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.99988	AAT	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr5	21316965	12A2p6	cell line	sgMsh2	21316965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	116	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon9:c.T1060C:p.L354L	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999358	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	21813959	12A2p6	cell line	sgMsh2	21813959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	144	0	0	NA	exonic	Slc26a5	nonsynonymous SNV	"Slc26a5:NM_001289787:exon16:c.A1770C:p.E590D,Slc26a5:NM_001289788:exon16:c.A1083C:p.E361D,Slc26a5:NM_030727:exon18:c.A1881C:p.E627D"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999904	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	21885520	12A2p6	cell line	sgMsh2	21885520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	315	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon64:c.A10333G:p.R3445G	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9999989	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	21947494	12A2p6	cell line	sgMsh2	21947494	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	126	0	0	NA	exonic	Reln	stopgain	Reln:NM_001310464:exon45:c.G6973T:p.E2325X	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	22034612	12A2p6	cell line	sgMsh2	22034612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	277	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon20:c.T2656C:p.F886L	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	2.13E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	22526395	12A2p6	cell line	sgMsh2	22526395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	217	0	0	NA	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon8:c.A792T:p.A264A	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	0.9999997	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr5	23492276	12A2p6	cell line	sgMsh2	23492276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	140	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon15:c.A1731C:p.E577D	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999874	AAG	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
M3_p20	chr5	23844024	12A2p6	cell line	sgMsh2	23844024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	127	0	0	NA	exonic	Tomm7	nonsynonymous SNV	Tomm7:NM_025394:exon1:c.A50C:p.K17T	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.850188667	1	0.9798632	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	61	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.845760601	1	0.9364851	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	24391713	12A2p6	cell line	sgMsh2	24391713	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.277	26	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon1:c.G204T:p.P68P	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9716191	CCG	synonymous	NA	NA	NA	NA
M3_p20	chr5	24416225	12A2p6	cell line	sgMsh2	24416225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	121	0	0	NA	exonic	Asic3	nonsynonymous SNV	"Asic3:NM_001310474:exon4:c.T942G:p.C314W,Asic3:NM_183000:exon4:c.T942G:p.C314W"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999543	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	24477100	12A2p6	cell line	sgMsh2	24477100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	169	0	0	NA	exonic	Agap3	nonsynonymous SNV	"Agap3:NM_001256431:exon5:c.T593C:p.V198A,Agap3:NM_001359881:exon5:c.T593C:p.V198A,Agap3:NM_139153:exon5:c.T593C:p.V198A"	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9997182	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	24593719	12A2p6	cell line	sgMsh2	24593719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	134	0	0	NA	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon10:c.T1091C:p.V364A	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999811	CAC	nonsynonymous	CCTCCA	13	CCTCCACCTCCAC	NA
M3_p20	chr5	25275725	12A2p6	cell line	sgMsh2	25275725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	215	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon58:c.A14525G:p.H4842R	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.9995175	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	25366098	12A2p6	cell line	sgMsh2	25366098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	31	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon15:c.T2613C:p.S871S	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9796339	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	25372985	12A2p6	cell line	sgMsh2	25372985	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	220	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon14:c.T2295A:p.S765S	5qA3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	25498502	12A2p6	cell line	sgMsh2	25498502	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.499	7	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon1:c.G49A:p.A17T	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.09586253	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	26036027	12A2p6	cell line	sgMsh2	26036027	G	A	SNV	Mutect2;MuSe;Vardict	3	0.12	264	0	0	NA	exonic	Speer4a	synonymous SNV	Speer4a:NM_029376:exon4:c.C466T:p.L156L	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.531367917	2	0.9999996	AGC	synonymous	NA	NA	NA	NA
M3_p20	chr5	26257866	12A2p6	cell line	sgMsh2	26257866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.244	486	0	0	NA	exonic	Gm7361	synonymous SNV	Gm7361:NM_001281527:exon1:c.T105C:p.N35N	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr5	29765555	12A2p6	cell line	sgMsh2	29765555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	212	0	0	NA	exonic	Dnajb6	synonymous SNV	"Dnajb6:NM_001037940:exon7:c.T531C:p.S177S,Dnajb6:NM_001127367:exon7:c.T528C:p.S176S,Dnajb6:NM_001359198:exon7:c.T531C:p.S177S,Dnajb6:NM_001378835:exon7:c.T531C:p.S177S,Dnajb6:NM_011847:exon7:c.T531C:p.S177S"	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr5	30920618	12A2p6	cell line	sgMsh2	30920618	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.223	68	0	0	NA	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon8:c.T2720C:p.V907A	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.997756	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.494	117	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M3_p20	chr5	32331276	12A2p6	cell line	sgMsh2	32331276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	413	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon42:c.A2903G:p.Y968C	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	170	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9978699	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	32887005	12A2p6	cell line	sgMsh2	32887005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	406	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001170567:exon8:c.A440G:p.K147R,Depdc5:NM_177786:exon8:c.A440G:p.K147R,Depdc5:NM_001025426:exon9:c.A440G:p.K147R"	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	33026582	12A2p6	cell line	sgMsh2	33026582	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	194	0	0	NA	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.A128C:p.N43T	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	33027143	12A2p6	cell line	sgMsh2	33027143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	99	0	0	NA	exonic	Ywhah	nonsynonymous SNV	Ywhah:NM_011738:exon2:c.T689C:p.L230P	5qB1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	34794116	12A2p6	cell line	sgMsh2	34794116	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	162	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon4:c.T420A:p.D140E	5qB2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.850188667	1	0.9886709	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	34966123	12A2p6	cell line	sgMsh2	34966123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	94	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1249G:p.T417A	5qB2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997135	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	34966139	12A2p6	cell line	sgMsh2	34966139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	93	0	0	NA	exonic	Rgs12	nonsynonymous SNV	Rgs12:NM_173402:exon2:c.A1265G:p.D422G	5qB2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996933	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	36809005	12A2p6	cell line	sgMsh2	36809005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	75	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon17:c.A2843G:p.K948R	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.9949933	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	41800833	12A2p6	cell line	sgMsh2	41800833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	313	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon19:c.A8324G:p.E2775G,Bod1l:NM_001310601:exon19:c.A8324G:p.E2775G"	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.10E-09	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	41816885	12A2p6	cell line	sgMsh2	41816885	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.169	88	0	0	NA	exonic	Bod1l	frameshift insertion	"Bod1l:NM_001081422:exon10:c.7084dupG:p.E2362Gfs*2,Bod1l:NM_001310601:exon10:c.7084dupG:p.E2362Gfs*2"	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.74834315	NA	NA	CTC	frameshift	C	5	CCCCC	1
M3_p20	chr5	41820669	12A2p6	cell line	sgMsh2	41820669	T	-	Deletion	Strelka2;Vardict	2	0.2008	249	0	0	NA	exonic	Bod1l	frameshift deletion	"Bod1l:NM_001081422:exon10:c.3301delA:p.S1101Afs*56,Bod1l:NM_001310601:exon10:c.3301delA:p.S1101Afs*56"	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.889155648	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr5	41832359	12A2p6	cell line	sgMsh2	41832359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	55	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon4:c.T1020C:p.T340T,Bod1l:NM_001310601:exon4:c.T1020C:p.T340T"	5qB3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9959514	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	51472896	12A2p6	cell line	sgMsh2	51472896	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	261	0	0	NA	exonic	Ppargc1a	synonymous SNV	Ppargc1a:NM_008904:exon9:c.C1878A:p.P626P	5qC1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.792623809	1	0.726182	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr5	57720612	12A2p6	cell line	sgMsh2	57720612	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	159	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310606:exon1:c.T1508C:p.V503A,Pcdh7:NM_001310608:exon1:c.T1508C:p.V503A,Pcdh7:NM_018764:exon1:c.T1508C:p.V503A"	5qC1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999966	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	61809673	12A2p6	cell line	sgMsh2	61809673	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	289	0	0	NA	exonic	G6pd2	nonsynonymous SNV	G6pd2:NM_019468:exon1:c.C790T:p.L264F	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.50E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	62636013	12A2p6	cell line	sgMsh2	62636013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	154	0	0	NA	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon26:c.T4089C:p.N1363N	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.9999761	TAT	synonymous	T	5	TTTTT	NA
M3_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	243	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.24E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	64103865	12A2p6	cell line	sgMsh2	64103865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	145	0	0	NA	exonic	Pgm2	nonsynonymous SNV	"Pgm2:NM_025700:exon6:c.G701T:p.G234V,Pgm2:NM_001356964:exon7:c.G515T:p.G172V"	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999911	GGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	65141360	12A2p6	cell line	sgMsh2	65141360	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	143	0	0	NA	exonic	Klhl5	frameshift deletion	"Klhl5:NM_001347355:exon2:c.61delA:p.M23Wfs*4,Klhl5:NM_001359401:exon2:c.481delA:p.M163Wfs*4,Klhl5:NM_175174:exon2:c.481delA:p.M163Wfs*4"	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr5	65416892	12A2p6	cell line	sgMsh2	65416892	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	174	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon11:c.C1307T:p.A436V	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.9563078	GGC	nonsynonymous	GGCT	8	GGCTGGCT	NA
M3_p20	chr5	66684780	12A2p6	cell line	sgMsh2	66684780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	58	0	0	NA	exonic	Uchl1	synonymous SNV	Uchl1:NM_011670:exon8:c.A534T:p.R178R	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.699634424	2	0.5639951	GAA	synonymous	NA	NA	NA	NA
M3_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	184	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999994	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	69559600	12A2p6	cell line	sgMsh2	69559600	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	354	0	0	NA	exonic	Guf1	nonsynonymous SNV	"Guf1:NM_001310631:exon5:c.G504T:p.Q168H,Guf1:NM_172711:exon5:c.G504T:p.Q168H"	5qC3.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.01E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	72108379	12A2p6	cell line	sgMsh2	72108379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	307	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon6:c.A616G:p.I206V,Gabrb1:NM_001370968:exon7:c.A517G:p.I173V"	5qC3.2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.15E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	73520210	12A2p6	cell line	sgMsh2	73520210	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.404	56	0	0	NA	exonic	Dcun1d4	frameshift deletion	"Dcun1d4:NM_001190733:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_178896:exon4:c.231delA:p.S80Afs*14,Dcun1d4:NM_001190734:exon5:c.273delA:p.S94Afs*14"	5qC3.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M3_p20	chr5	73534610	12A2p6	cell line	sgMsh2	73534610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	342	0	0	NA	exonic	Dcun1d4	nonsynonymous SNV	"Dcun1d4:NM_001190733:exon7:c.T419C:p.V140A,Dcun1d4:NM_178896:exon7:c.T419C:p.V140A,Dcun1d4:NM_001190734:exon8:c.T461C:p.V154A"	5qC3.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999989	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	216	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	75964693	12A2p6	cell line	sgMsh2	75964693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	194	0	0	NA	exonic	Kdr	synonymous SNV	"Kdr:NM_001363216:exon9:c.T1143C:p.V381V,Kdr:NM_010612:exon9:c.T1143C:p.V381V"	5qC3.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	CAA	synonymous	NA	NA	NA	NA
M3_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	156	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M3_p20	chr5	81329783	12A2p6	cell line	sgMsh2	81329783	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	19	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001347368:exon4:c.G82A:p.A28T,Adgrl3:NM_001359830:exon4:c.G82A:p.A28T,Adgrl3:NM_001359831:exon4:c.G82A:p.A28T,Adgrl3:NM_001347367:exon5:c.G82A:p.A28T,Adgrl3:NM_001347369:exon5:c.G82A:p.A28T,Adgrl3:NM_001359828:exon5:c.G82A:p.A28T,Adgrl3:NM_001359832:exon5:c.G82A:p.A28T,Adgrl3:NM_001359834:exon5:c.G82A:p.A28T,Adgrl3:NM_198702:exon5:c.G82A:p.A28T"	5qD	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9550693	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	81766205	12A2p6	cell line	sgMsh2	81766205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	202	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon21:c.T3413C:p.I1138T,Adgrl3:NM_001347371:exon22:c.T3428C:p.I1143T,Adgrl3:NM_001347368:exon23:c.T3632C:p.I1211T,Adgrl3:NM_001359826:exon23:c.T2942C:p.I981T,Adgrl3:NM_001359832:exon23:c.T3617C:p.I1206T,Adgrl3:NM_001359833:exon23:c.T3452C:p.I1151T,Adgrl3:NM_001347369:exon24:c.T3632C:p.I1211T,Adgrl3:NM_001359830:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359831:exon24:c.T3659C:p.I1220T,Adgrl3:NM_001359834:exon24:c.T3644C:p.I1215T,Adgrl3:NM_001347367:exon25:c.T3659C:p.I1220T,Adgrl3:NM_001359828:exon25:c.T3659C:p.I1220T,Adgrl3:NM_198702:exon25:c.T3659C:p.I1220T"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	83294647	12A2p6	cell line	sgMsh2	83294647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	100	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon6:c.T578C:p.I193T	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998094	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	84331605	12A2p6	cell line	sgMsh2	84331605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	198	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon3:c.C539A:p.A180D	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	86118082	12A2p6	cell line	sgMsh2	86118082	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	305	0	0	NA	exonic	Uba6	stopgain	Uba6:NM_172712:exon32:c.G2965T:p.G989X	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.17E-09	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	186	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	87254427	12A2p6	cell line	sgMsh2	87254427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	248	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A344C:p.N115T	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	9.12E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	87325458	12A2p6	cell line	sgMsh2	87325458	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.242	60	0	0	NA	exonic	Ugt2a3	frameshift insertion	Ugt2a3:NM_028094:exon6:c.1598dupA:p.N534delinsELGLF	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TCT	frameshift	TTCTTT	12	TTCTTTTTCTTT	1
M3_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	101	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	GCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	87843547	12A2p6	cell line	sgMsh2	87843547	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.418	123	0	0	NA	exonic	Prr27	frameshift deletion	"Prr27:NM_028648:exon4:c.993delT:p.Y334Tfs*4,Prr27:NM_001163551:exon5:c.1017delT:p.Y342Tfs*4"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr5	87979950	12A2p6	cell line	sgMsh2	87979950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	248	0	0	NA	exonic	Cabs1	synonymous SNV	Cabs1:NM_027631:exon1:c.A459G:p.E153E	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	9.12E-09	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	88328658	12A2p6	cell line	sgMsh2	88328658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	250	0	0	NA	exonic	Prol1	synonymous SNV	Prol1:NM_008644:exon3:c.G906A:p.K302K	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.828048337	1	0.9827386	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr5	89701678	12A2p6	cell line	sgMsh2	89701678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	157	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon13:c.A1882C:p.N628H,Adamts3:NM_177872:exon13:c.A1882C:p.N628H"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.999996	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	245	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	1.10E-08	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	234	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	2.20E-08	AAC	synonymous	A	5	AAAAA	NA
M3_p20	chr5	90606874	12A2p6	cell line	sgMsh2	90606874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	228	0	0	NA	exonic	Rassf6	nonsynonymous SNV	"Rassf6:NM_001310656:exon7:c.T544C:p.S182P,Rassf6:NM_028478:exon7:c.T583C:p.S195P"	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	3.26E-08	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M3_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	173	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999987	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	91594162	12A2p6	cell line	sgMsh2	91594162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	125	0	0	NA	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.C388T:p.P130S	5qE2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999652	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	358	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr5	92627441	12A2p6	cell line	sgMsh2	92627441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	166	0	0	NA	exonic	Ccdc158	synonymous SNV	"Ccdc158:NM_001360018:exon21:c.T2916C:p.S972S,Ccdc158:NM_177230:exon21:c.T2904C:p.S968S"	5qE2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9991362	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	96534932	12A2p6	cell line	sgMsh2	96534932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	196	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon4:c.A287G:p.H96R	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	96555302	12A2p6	cell line	sgMsh2	96555302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	113	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon9:c.A923G:p.D308G	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.650925698	2	0.9830563	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	96642604	12A2p6	cell line	sgMsh2	96642604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	215	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon23:c.T2836C:p.Y946H	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	96739386	12A2p6	cell line	sgMsh2	96739386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	196	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon55:c.T8026C:p.F2676L	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	96758230	12A2p6	cell line	sgMsh2	96758230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	131	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon62:c.A9492G:p.P3164P	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.7254113	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	96776630	12A2p6	cell line	sgMsh2	96776630	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	135	0	0	NA	exonic	Fras1	synonymous SNV	Fras1:NM_175473:exon71:c.A10929C:p.I3643I	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9989778	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	97455677	12A2p6	cell line	sgMsh2	97455677	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	294	0	0	NA	exonic	Gk2	nonsynonymous SNV	Gk2:NM_010294:exon1:c.T1301G:p.L434R	5qE3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.36E-09	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	68	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9895462	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	100798421	12A2p6	cell line	sgMsh2	100798421	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.436	6	0	0	NA	exonic	Helq	frameshift deletion	Helq:NM_001081107:exon1:c.53delA:p.N18Tfs*62	5qE4	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr5	104968246	12A2p6	cell line	sgMsh2	104968246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	185	0	0	NA	exonic	Abcg3	nonsynonymous SNV	Abcg3:NM_030239:exon7:c.T721C:p.S241P	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.814764139	1	0.9313904	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	105606595	12A2p6	cell line	sgMsh2	105606595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	158	0	0	NA	exonic	Lrrc8c	nonsynonymous SNV	Lrrc8c:NM_133897:exon4:c.A235G:p.T79A	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999963	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	106636730	12A2p6	cell line	sgMsh2	106636730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	167	0	0	NA	exonic	Zfp644	synonymous SNV	"Zfp644:NM_001363323:exon2:c.T1875C:p.S625S,Zfp644:NM_001363320:exon3:c.T1950C:p.S650S,Zfp644:NM_001363321:exon3:c.T1950C:p.S650S,Zfp644:NM_001363322:exon3:c.T1917C:p.S639S,Zfp644:NM_026856:exon3:c.T1950C:p.S650S,Zfp644:NM_001363319:exon4:c.T1950C:p.S650S,Zfp644:NM_001363318:exon6:c.T1950C:p.S650S"	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.999998	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	106901853	12A2p6	cell line	sgMsh2	106901853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	76	0	0	NA	exonic	Hfm1	nonsynonymous SNV	Hfm1:NM_177873:exon12:c.T1241C:p.V414A	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990262	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	107485797	12A2p6	cell line	sgMsh2	107485797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	277	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon7:c.T871A:p.L291M	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	2.13E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	107497764	12A2p6	cell line	sgMsh2	107497764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	328	0	0	NA	exonic	Btbd8	nonsynonymous SNV	Btbd8:NM_001378266:exon12:c.C1484T:p.A495V	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.04E-09	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	107507151	12A2p6	cell line	sgMsh2	107507151	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	116	0	0	NA	exonic	Btbd8	stopgain	"Btbd8:NM_001384112:exon6:c.C1279T:p.R427X,Btbd8:NM_001378266:exon17:c.C2815T:p.R939X"	5qE5	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999358	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	107901925	12A2p6	cell line	sgMsh2	107901925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	124	0	0	NA	exonic	Rpl5	nonsynonymous SNV	Rpl5:NM_016980:exon2:c.T59C:p.F20S	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9989351	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	46	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9925593	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	108745687	12A2p6	cell line	sgMsh2	108745687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	160	0	0	NA	exonic	Rnf212	nonsynonymous SNV	Rnf212:NM_001362887:exon9:c.T548C:p.I183T	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999968	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	110269678	12A2p6	cell line	sgMsh2	110269678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	14	0	0	NA	exonic	Pgam5	synonymous SNV	"Pgam5:NM_001163538:exon1:c.C162A:p.R54R,Pgam5:NM_028273:exon1:c.C162A:p.R54R"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9378643	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr5	110866346	12A2p6	cell line	sgMsh2	110866346	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.361	118	0	0	NA	exonic	Chek2	synonymous SNV	"Chek2:NM_001363308:exon10:c.T474G:p.P158P,Chek2:NM_016681:exon11:c.T1191G:p.P397P"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.999944	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr5	112914941	12A2p6	cell line	sgMsh2	112914941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	29	0	0	NA	exonic	Grk3	nonsynonymous SNV	"Grk3:NM_001285806:exon21:c.T1718C:p.L573P,Grk3:NM_177078:exon21:c.T2039C:p.L680P"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9767356	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	112920136	12A2p6	cell line	sgMsh2	112920136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	105	0	0	NA	exonic	Grk3	nonsynonymous SNV	"Grk3:NM_001285806:exon18:c.T1205C:p.F402S,Grk3:NM_177078:exon18:c.T1526C:p.F509S"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998644	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	113577320	12A2p6	cell line	sgMsh2	113577320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	92	0	0	NA	exonic	Wscd2	nonsynonymous SNV	Wscd2:NM_177292:exon7:c.A1220G:p.H407R	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9996717	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	114012587	12A2p6	cell line	sgMsh2	114012587	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.346	50	0	0	NA	exonic	Dao	frameshift deletion	"Dao:NM_001286396:exon3:c.251delA:p.M86Wfs*4,Dao:NM_001286397:exon3:c.251delA:p.M86Wfs*4,Dao:NM_010018:exon3:c.251delA:p.M86Wfs*4"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr5	114804258	12A2p6	cell line	sgMsh2	114804258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	64	0	0	NA	exonic	Ankrd13a	nonsynonymous SNV	"Ankrd13a:NM_001378897:exon15:c.T1604C:p.M535T,Ankrd13a:NM_026718:exon15:c.T1601C:p.M534T"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.9851139	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	114950753	12A2p6	cell line	sgMsh2	114950753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	60	0	0	NA	exonic	Hnf1a	nonsynonymous SNV	Hnf1a:NM_009327:exon9:c.A1703T:p.Q568L	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.907753525	1	0.9811025	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M3_p20	chr5	115571482	12A2p6	cell line	sgMsh2	115571482	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	226	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon2:c.G92T:p.S31I	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	3.72E-08	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	62	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.996392	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	103	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998446	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	117252547	12A2p6	cell line	sgMsh2	117252547	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	34	0	0	NA	exonic	Taok3	nonsynonymous SNV	"Taok3:NM_001081308:exon15:c.G1572T:p.K524N,Taok3:NM_001199685:exon16:c.G1572T:p.K524N,Taok3:NM_183306:exon16:c.G1572T:p.K524N"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9833297	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	117371125	12A2p6	cell line	sgMsh2	117371125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	112	0	0	NA	exonic	Wsb2	nonsynonymous SNV	Wsb2:NM_021539:exon4:c.T464C:p.V155A	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9992552	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	117867562	12A2p6	cell line	sgMsh2	117867562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	93	0	0	NA	exonic	Nos1	nonsynonymous SNV	Nos1:NM_008712:exon1:c.A346G:p.T116A	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.9220948	AAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr5	118201149	12A2p6	cell line	sgMsh2	118201149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	102	0	0	NA	exonic	Rnft2	nonsynonymous SNV	"Rnft2:NM_001109902:exon10:c.A1202G:p.Q401R,Rnft2:NM_172998:exon11:c.A1205G:p.Q402R"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998337	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	120524323	12A2p6	cell line	sgMsh2	120524323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	65	0	0	NA	exonic	Slc8b1	nonsynonymous SNV	"Slc8b1:NM_001177594:exon9:c.A931G:p.K311E,Slc8b1:NM_001177595:exon10:c.A982G:p.K328E,Slc8b1:NM_133221:exon10:c.A982G:p.K328E"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9979448	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	121534348	12A2p6	cell line	sgMsh2	121534348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	180	0	0	NA	exonic	Mapkapk5	nonsynonymous SNV	Mapkapk5:NM_010765:exon7:c.A566G:p.Y189C	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	123037360	12A2p6	cell line	sgMsh2	123037360	C	-	Deletion	Mutect2;Vardict	2	0.264	34	0	0	NA	exonic	Morn3	frameshift deletion	"Morn3:NM_001347456:exon4:c.464delG:p.S155Mfs*24,Morn3:NM_029112:exon5:c.649delG:p.V217Wfs*3"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
M3_p20	chr5	123143390	12A2p6	cell line	sgMsh2	123143390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	33	0	0	NA	exonic	Setd1b	nonsynonymous SNV	Setd1b:NM_001040398:exon3:c.A206G:p.D69G	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9821776	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	153	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999948	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	123998901	12A2p6	cell line	sgMsh2	123998901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	36	0	0	NA	exonic	Hip1r	nonsynonymous SNV	Hip1r:NM_145070:exon19:c.A1931C:p.D644A	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9854186	GAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr5	124089692	12A2p6	cell line	sgMsh2	124089692	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	56	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon2:c.C485T:p.A162V	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9962165	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	124292354	12A2p6	cell line	sgMsh2	124292354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	235	0	0	NA	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon10:c.T1778G:p.L593R,Mphosph9:NM_001277867:exon11:c.T1868G:p.L623R"	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	124530704	12A2p6	cell line	sgMsh2	124530704	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	71	0	0	NA	exonic	Rilpl1	nonsynonymous SNV	Rilpl1:NM_021430:exon1:c.C280T:p.R94C	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.810336073	1	0.8788032	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	124803824	12A2p6	cell line	sgMsh2	124803824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	267	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon50:c.A8483G:p.H2828R	5qF	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	125415139	12A2p6	cell line	sgMsh2	125415139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	0	0	NA	exonic	Dhx37	nonsynonymous SNV	Dhx37:NM_203319:exon27:c.T3395C:p.L1132P	5qG1.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999098	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	125778827	12A2p6	cell line	sgMsh2	125778827	T	C	SNV	Mutect2;Strelka2	2	0.273	14	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon6:c.T1622C:p.V541A	5qG1.1	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9378643	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	127551658	12A2p6	cell line	sgMsh2	127551658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	155	0	0	NA	exonic	Tmem132c	synonymous SNV	Tmem132c:NM_175432:exon6:c.A1623G:p.T541T	5qG1.2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.991886778	1	0.999993	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	127604164	12A2p6	cell line	sgMsh2	127604164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	175	0	0	NA	exonic	Slc15a4	nonsynonymous SNV	Slc15a4:NM_133895:exon4:c.A1039C:p.S347R	5qG1.2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999988	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	127784717	12A2p6	cell line	sgMsh2	127784717	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.155	125	0	0	NA	exonic	Tmem132d	nonsynonymous SNV	Tmem132d:NM_172885:exon9:c.A2339G:p.K780R	5qG1.2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.686350226	2	0.9594132	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	129162644	12A2p6	cell line	sgMsh2	129162644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	367	0	0	NA	exonic	Adgrd1	nonsynonymous SNV	"Adgrd1:NM_001347486:exon14:c.T1514C:p.L505P,Adgrd1:NM_001081342:exon15:c.T1610C:p.L537P"	5qG1.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	129595427	12A2p6	cell line	sgMsh2	129595427	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	165	0	0	NA	exonic	Mmp17	nonsynonymous SNV	Mmp17:NM_011846:exon4:c.T442G:p.S148A	5qG1.3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999977	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	130877774	12A2p6	cell line	sgMsh2	130877774	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	46	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1555G:p.T519A	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9925593	GTG	nonsynonymous	GTG	8	GTGGTGGT	NA
M3_p20	chr5	134196572	12A2p6	cell line	sgMsh2	134196572	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	53	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon5:c.A500T:p.E167V,Gtf2ird2:NM_053266:exon5:c.A500T:p.E167V"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9953643	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	117	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.99994	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	134362547	12A2p6	cell line	sgMsh2	134362547	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	106	0	0	NA	exonic	Gtf2ird1	nonsynonymous SNV	"Gtf2ird1:NM_001081468:exon23:c.C2380T:p.P794S,Gtf2ird1:NM_001081466:exon24:c.C2536T:p.P846S,Gtf2ird1:NM_001347488:exon24:c.C2536T:p.P846S,Gtf2ird1:NM_001081463:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081464:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081465:exon25:c.C2593T:p.P865S,Gtf2ird1:NM_001081462:exon26:c.C2674T:p.P892S,Gtf2ird1:NM_020331:exon26:c.C2674T:p.P892S"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998733	GGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999948	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	135217642	12A2p6	cell line	sgMsh2	135217642	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	193	0	0	NA	exonic	Baz1b	frameshift deletion	Baz1b:NM_011714:exon7:c.1944delT:p.L650Cfs*2	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr5	135412712	12A2p6	cell line	sgMsh2	135412712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	93	0	0	NA	exonic	Hip1	nonsynonymous SNV	"Hip1:NM_001382848:exon30:c.T2834C:p.V945A,Hip1:NM_146001:exon30:c.T2936C:p.V979A"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.7688351	CAC	nonsynonymous	TCCAGC	12	TCCAGCTCCAGC	NA
M3_p20	chr5	135854387	12A2p6	cell line	sgMsh2	135854387	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	62	0	0	NA	exonic	Srrm3	synonymous SNV	Srrm3:NM_021403:exon7:c.C595T:p.L199L	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9974809	CCT	synonymous	C	5	CCCCC	NA
M3_p20	chr5	135873108	12A2p6	cell line	sgMsh2	135873108	C	A	SNV	Mutect2;Vardict	2	0.429	7	0	0	NA	exonic	Srrm3	synonymous SNV	Srrm3:NM_021403:exon15:c.C1747A:p.R583R	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.09586253	CCG	synonymous	NA	NA	NA	NA
M3_p20	chr5	135911218	12A2p6	cell line	sgMsh2	135911218	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	49	0	0	NA	exonic	Ywhag	frameshift deletion	Ywhag:NM_018871:exon2:c.521delG:p.G174Afs*37	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	178	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999991	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	136064128	12A2p6	cell line	sgMsh2	136064128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	99	0	0	NA	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A707G:p.H236R,Upk3bl:NM_027158:exon6:c.A710G:p.H237R"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	137113580	12A2p6	cell line	sgMsh2	137113580	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	33	0	0	NA	exonic	Trim56	nonsynonymous SNV	Trim56:NM_201373:exon3:c.A1081C:p.K361Q	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9575809	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	137400012	12A2p6	cell line	sgMsh2	137400012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	290	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon66:c.T12757C:p.C4253R	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	137484567	12A2p6	cell line	sgMsh2	137484567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	200	0	0	NA	exonic	Epo	synonymous SNV	"Epo:NM_001312875:exon3:c.T162C:p.G54G,Epo:NM_007942:exon3:c.T162C:p.G54G"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	0.999913	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr5	137522427	12A2p6	cell line	sgMsh2	137522427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	15	0	0	NA	exonic	Gigyf1	nonsynonymous SNV	Gigyf1:NM_031408:exon12:c.A1346C:p.E449A	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	2	1	1	0.9417548	GAG	nonsynonymous	GGA	10	GGAGGAGGAG	NA
M3_p20	chr5	137607443	12A2p6	cell line	sgMsh2	137607443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	124	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon5:c.G687A:p.K229K	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999627	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr5	137636996	12A2p6	cell line	sgMsh2	137636996	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	64	0	0	NA	exonic	Lrch4	synonymous SNV	"Lrch4:NM_001168652:exon6:c.G747A:p.K249K,Lrch4:NM_146164:exon6:c.G747A:p.K249K"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.9943079	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr5	139223600	12A2p6	cell line	sgMsh2	139223600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	208	0	0	NA	exonic	Sun1	synonymous SNV	"Sun1:NM_001256118:exon2:c.T84C:p.S28S,Sun1:NM_001256115:exon3:c.T84C:p.S28S,Sun1:NM_001256116:exon3:c.T84C:p.S28S,Sun1:NM_001256117:exon3:c.T84C:p.S28S,Sun1:NM_001359494:exon3:c.T84C:p.S28S,Sun1:NM_001359496:exon3:c.T84C:p.S28S,Sun1:NM_024451:exon3:c.T84C:p.S28S"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	246	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.03E-08	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	139706886	12A2p6	cell line	sgMsh2	139706886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	36	0	0	NA	exonic	Micall2	nonsynonymous SNV	Micall2:NM_174850:exon17:c.T2980G:p.S994A	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.9398168	GAC	nonsynonymous	GGACTT	12	GGACTTGGACTT	NA
M3_p20	chr5	139808448	12A2p6	cell line	sgMsh2	139808448	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	124	0	0	NA	exonic	Tmem184a	frameshift deletion	"Tmem184a:NM_144914:exon2:c.303delC:p.I102Sfs*37,Tmem184a:NM_001161548:exon3:c.375delC:p.I126Sfs*37"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.810336073	NA	NA	TGG	frameshift	NA	NA	NA	-1
M3_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	141	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.999904	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr5	140193962	12A2p6	cell line	sgMsh2	140193962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	125	0	0	NA	exonic	Mad1l1	synonymous SNV	"Mad1l1:NM_001359025:exon11:c.T1170C:p.H390H,Mad1l1:NM_010752:exon11:c.T1170C:p.H390H"	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.761627348	1	0.5149798	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr5	141962797	12A2p6	cell line	sgMsh2	141962797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	164	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon13:c.A1896G:p.I632M	5qG2	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999975	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	392	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	146583706	12A2p6	cell line	sgMsh2	146583706	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	171	0	0	NA	exonic	Gpr12	synonymous SNV	"Gpr12:NM_008151:exon1:c.T405G:p.T135T,Gpr12:NM_001010941:exon2:c.T405G:p.T135T,Gpr12:NM_001359055:exon2:c.T405G:p.T135T,Gpr12:NM_001359056:exon2:c.T405G:p.T135T,Gpr12:NM_001359057:exon2:c.T405G:p.T135T"	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999985	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr5	149593124	12A2p6	cell line	sgMsh2	149593124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	166	0	0	NA	exonic	Wdr95	nonsynonymous SNV	Wdr95:NM_029440:exon16:c.T1003C:p.F335L	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.9999745	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	150662367	12A2p6	cell line	sgMsh2	150662367	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	90	0	0	NA	exonic	N4bp2l2	frameshift deletion	"N4bp2l2:NM_001362416:exon2:c.147delA:p.K49Nfs*29,N4bp2l2:NM_201369:exon2:c.147delA:p.K49Nfs*29"	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	0.95646225	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M3_p20	chr5	151561858	12A2p6	cell line	sgMsh2	151561858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	400	0	0	NA	exonic	Vmn2r18	nonsynonymous SNV	"Vmn2r18:NM_001102582:exon5:c.A2170G:p.S724G,Vmn2r18:NM_001385214:exon6:c.A2395G:p.S799G"	5qG3	chr5-3344373-151647482	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.336	77	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M3_p20	chr6	3373447	12A2p6	cell line	sgMsh2	3373447	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	226	0	0	NA	exonic	Samd9l	synonymous SNV	Samd9l:NM_010156:exon2:c.A3813C:p.P1271P	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	2	0.9993508	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr6	3373758	12A2p6	cell line	sgMsh2	3373758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	329	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.A3502G:p.T1168A	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.664209896	2	0.9999989	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	3375035	12A2p6	cell line	sgMsh2	3375035	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	445	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.C2225T:p.A742V	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.863472865	1	0.9999866	CGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	3467640	12A2p6	cell line	sgMsh2	3467640	T	-	Deletion	Mutect2;Vardict	2	0.136	108	0	0	NA	exonic	Hepacam2	frameshift deletion	Hepacam2:NM_178899:exon5:c.1125delA:p.K375Nfs*7	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.602216972	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3_p20	chr6	3483495	12A2p6	cell line	sgMsh2	3483495	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	345	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon3:c.C513T:p.C171C	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.752771216	2	0.9818009	GGC	synonymous	NA	NA	NA	NA
M3_p20	chr6	4516012	12A2p6	cell line	sgMsh2	4516012	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	157	0	0	NA	exonic	Col1a2	stopgain	Col1a2:NM_007743:exon10:c.C502T:p.Q168X	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.628785368	2	0.9994581	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	328	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.482659191	2	0.9998963	CCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	7685200	12A2p6	cell line	sgMsh2	7685200	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	138	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T456A:p.D152E	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.593360841	2	0.9996854	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	8103501	12A2p6	cell line	sgMsh2	8103501	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	297	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon15:c.G1294T:p.G432W	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.500371455	2	0.9999878	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1618	309	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.716461075	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr6	12503957	12A2p6	cell line	sgMsh2	12503957	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	398	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon3:c.G1197A:p.E399E	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.571220511	2	1.00E-09	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr6	15379796	12A2p6	cell line	sgMsh2	15379796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	120	0	0	NA	exonic	Foxp2	synonymous SNV	"Foxp2:NM_001286607:exon6:c.A678G:p.Q226Q,Foxp2:NM_212435:exon6:c.A741G:p.Q247Q,Foxp2:NM_053242:exon8:c.A741G:p.Q247Q"	6qA1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.9999511	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	269	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.544652115	2	4.75E-08	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	276	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.624357302	2	0.9999997	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	651	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.584504709	2	1	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	197	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.810336073	1	0.9140522	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	21216811	12A2p6	cell line	sgMsh2	21216811	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	160	0	0	NA	exonic	Kcnd2	synonymous SNV	Kcnd2:NM_019697:exon1:c.C513T:p.V171V	6qA2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.332104948	3	0.9996184	TCT	synonymous	NA	NA	NA	NA
M3_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.684	408	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	4	1	1	1.00E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M3_p20	chr6	27363364	12A2p6	cell line	sgMsh2	27363364	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	390	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2151C:p.D717D,Grm8:NM_001361125:exon9:c.T2151C:p.D717D,Grm8:NM_008174:exon9:c.T2151C:p.D717D"	6qA3.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.854616733	1	0.9998589	GAT	synonymous	G	7	GGGGGGG	NA
M3_p20	chr6	28668629	12A2p6	cell line	sgMsh2	28668629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	346	0	0	NA	exonic	Snd1	synonymous SNV	Snd1:NM_019776:exon12:c.T1314C:p.R438R	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	2	0.9999882	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr6	29128679	12A2p6	cell line	sgMsh2	29128679	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	88	0	0	NA	exonic	Rbm28	frameshift deletion	Rbm28:NM_133925:exon17:c.1765delA:p.M589Wfs*5	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.72620282	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M3_p20	chr6	29433497	12A2p6	cell line	sgMsh2	29433497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	189	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon1:c.C39T:p.L13L,Flnc:NM_001311074:exon1:c.C39T:p.L13L"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.633213434	2	0.9998912	TCG	synonymous	CGGCCT	12	CGGCCTCGGCCT	NA
M3_p20	chr6	29443464	12A2p6	cell line	sgMsh2	29443464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	203	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001081185:exon10:c.T1643C:p.V548A,Flnc:NM_001311074:exon10:c.T1643C:p.V548A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.61550117	2	0.9999858	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	29460885	12A2p6	cell line	sgMsh2	29460885	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.155	116	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001311074:exon46:c.C7875T:p.T2625T,Flnc:NM_001081185:exon47:c.C7974T:p.T2658T"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.686350226	2	0.9431092	CCG	synonymous	NA	NA	NA	NA
M3_p20	chr6	29461045	12A2p6	cell line	sgMsh2	29461045	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	159	0	0	NA	exonic	Flnc	frameshift deletion	"Flnc:NM_001311074:exon47:c.7918delG:p.V2640Cfs*12,Flnc:NM_001081185:exon48:c.8017delG:p.V2673Cfs*12"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.792623809	NA	NA	CGT	frameshift	NA	NA	NA	-1
M3_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	64	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.513655653	2	0.9734311	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	30119035	12A2p6	cell line	sgMsh2	30119035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	134	0	0	NA	exonic	Nrf1	synonymous SNV	"Nrf1:NM_001164226:exon10:c.A1152G:p.S384S,Nrf1:NM_001164227:exon10:c.A1152G:p.S384S,Nrf1:NM_001164228:exon10:c.A1152G:p.S384S,Nrf1:NM_001164230:exon10:c.A1152G:p.S384S,Nrf1:NM_001361692:exon10:c.A1152G:p.S384S,Nrf1:NM_001361694:exon10:c.A1152G:p.S384S,Nrf1:NM_001361695:exon10:c.A1152G:p.S384S,Nrf1:NM_010938:exon10:c.A1152G:p.S384S,Nrf1:NM_001164229:exon11:c.A1188G:p.S396S,Nrf1:NM_001361693:exon11:c.A1188G:p.S396S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.779339611	1	0.6791912	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr6	30129339	12A2p6	cell line	sgMsh2	30129339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	129	0	0	NA	exonic	Nrf1	nonsynonymous SNV	"Nrf1:NM_001164230:exon12:c.T1507C:p.C503R,Nrf1:NM_001164229:exon13:c.T1543C:p.C515R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.68192216	2	0.9711459	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	30370456	12A2p6	cell line	sgMsh2	30370456	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	152	0	0	NA	exonic	Zc3hc1	nonsynonymous SNV	"Zc3hc1:NM_001311086:exon9:c.A1246C:p.S416R,Zc3hc1:NM_172735:exon9:c.A1246C:p.S416R"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.9999944	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	30519689	12A2p6	cell line	sgMsh2	30519689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	223	0	0	NA	exonic	Ssmem1	synonymous SNV	"Ssmem1:NM_027073:exon3:c.A372G:p.S124S,Ssmem1:NM_029373:exon3:c.A516G:p.S172S"	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.456090795	2	0.9705685	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr6	30547176	12A2p6	cell line	sgMsh2	30547176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	398	0	0	NA	exonic	Cpa2	synonymous SNV	Cpa2:NM_001024698:exon5:c.T450C:p.S150S	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.65978183	2	2.49E-08	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr6	30581677	12A2p6	cell line	sgMsh2	30581677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	185	0	0	NA	exonic	Cpa4	nonsynonymous SNV	Cpa4:NM_027926:exon7:c.A622G:p.T208A	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.602216972	2	0.9999808	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	177	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	2	0.9929284	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	230	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.522511785	2	0.9999931	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	35289901	12A2p6	cell line	sgMsh2	35289901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	110	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon3:c.G258A:p.T86T	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.500371455	2	0.9941594	GCG	synonymous	NA	NA	NA	NA
M3_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	367	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.655353764	2	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	40386838	12A2p6	cell line	sgMsh2	40386838	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	280	0	0	NA	exonic	Agk	nonsynonymous SNV	Agk:NM_023538:exon12:c.T751A:p.S251T	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.766055413	2	0.8361824	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	40465892	12A2p6	cell line	sgMsh2	40465892	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	242	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon12:c.T1597G:p.S533A	6qB1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.867900931	1	0.9993059	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	41772010	12A2p6	cell line	sgMsh2	41772010	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	330	0	0	NA	exonic	Olfr459	synonymous SNV	Olfr459:NM_146576:exon1:c.A288G:p.G96G	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.349817212	3	0.9999996	ATC	synonymous	NA	NA	NA	NA
M3_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	314	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.783767677	2	0.5343259	ACG	synonymous	NA	NA	NA	NA
M3_p20	chr6	42406480	12A2p6	cell line	sgMsh2	42406480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	225	0	0	NA	exonic	Tas2r135	nonsynonymous SNV	Tas2r135:NM_199159:exon1:c.A952G:p.R318G	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	2	0.998847	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	42593742	12A2p6	cell line	sgMsh2	42593742	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	319	0	0	NA	exonic	Tcaf3	nonsynonymous SNV	Tcaf3:NM_203396:exon2:c.A1075C:p.I359L	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	2	0.9958876	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	42896714	12A2p6	cell line	sgMsh2	42896714	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.155	470	0	0	NA	exonic	Olfr448	frameshift deletion	Olfr448:NM_146273:exon1:c.262delA:p.K89Nfs*8	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.686350226	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	170	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.9999984	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	43523898	12A2p6	cell line	sgMsh2	43523898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	420	0	0	NA	exonic	Tpk1	nonsynonymous SNV	"Tpk1:NM_001311111:exon5:c.T244C:p.Y82H,Tpk1:NM_013861:exon5:c.T244C:p.Y82H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.708490556	2	0.9999909	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	47821489	12A2p6	cell line	sgMsh2	47821489	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	352	0	0	NA	exonic	Zfp786	nonsynonymous SNV	Zfp786:NM_177882:exon4:c.C514T:p.L172F	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.549080181	2	1.17E-09	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	48450153	12A2p6	cell line	sgMsh2	48450153	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	73	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon6:c.A824G:p.E275G	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	0.974174514	1	0.9977253	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	146	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.438378531	2	0.8029566	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr6	48472446	12A2p6	cell line	sgMsh2	48472446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	158	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon48:c.C7320T:p.A2440A	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.690778292	2	0.9855755	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	91	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.619929236	2	0.9799874	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	48498688	12A2p6	cell line	sgMsh2	48498688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	101	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon101:c.C15175T:p.L5059F	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.999822	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	167	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.779339611	1	0.6224659	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	48619665	12A2p6	cell line	sgMsh2	48619665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	70	0	0	NA	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A472G:p.R158G	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.74834315	1	6.45E-07	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	49417382	12A2p6	cell line	sgMsh2	49417382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	320	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon7:c.C608T:p.P203L,Stk31:NM_029916:exon7:c.C677T:p.P226L"	6qB2.3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.72620282	2	0.9984731	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	54218559	12A2p6	cell line	sgMsh2	54218559	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	204	0	0	NA	exonic	Chn2	nonsynonymous SNV	Chn2:NM_001163640:exon5:c.A212C:p.E71A	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.571220511	2	0.9999993	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	54622225	12A2p6	cell line	sgMsh2	54622225	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	309	0	0	NA	exonic	Plekha8	nonsynonymous SNV	"Plekha8:NM_001001335:exon7:c.C608T:p.T203I,Plekha8:NM_001164361:exon7:c.C743T:p.T248I"	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.562364379	2	1.24E-09	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	55260598	12A2p6	cell line	sgMsh2	55260598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	239	0	0	NA	exonic	Mindy4	nonsynonymous SNV	"Mindy4:NM_001142781:exon7:c.A1157C:p.K386T,Mindy4:NM_177883:exon7:c.A1157C:p.K386T"	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.797051875	1	0.8028809	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	55379745	12A2p6	cell line	sgMsh2	55379745	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	384	0	0	NA	exonic	Ghrhr	nonsynonymous SNV	Ghrhr:NM_001003685:exon4:c.C326A:p.P109H	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.72620282	2	0.9997063	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	55479287	12A2p6	cell line	sgMsh2	55479287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	300	0	0	NA	exonic	Adcyap1r1	nonsynonymous SNV	"Adcyap1r1:NM_001025372:exon9:c.T659C:p.F220S,Adcyap1r1:NM_007407:exon9:c.T659C:p.F220S"	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.668637962	2	0.9999931	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	56179104	12A2p6	cell line	sgMsh2	56179104	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	502	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon4:c.G454A:p.D152N,Pde1c:NM_001159956:exon4:c.G370A:p.D124N,Pde1c:NM_001025568:exon5:c.G481A:p.D161N,Pde1c:NM_001159953:exon5:c.G481A:p.D161N,Pde1c:NM_001159957:exon5:c.G397A:p.D133N,Pde1c:NM_001355475:exon5:c.G481A:p.D161N,Pde1c:NM_001159955:exon6:c.G481A:p.D161N,Pde1c:NM_001159960:exon6:c.G481A:p.D161N,Pde1c:NM_011054:exon6:c.G481A:p.D161N"	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.584504709	2	1	TCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	56730679	12A2p6	cell line	sgMsh2	56730679	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	81	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon8:c.A608C:p.K203T	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.619929236	2	0.9633433	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	56956940	12A2p6	cell line	sgMsh2	56956940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	237	0	0	NA	exonic	Vmn1r4	nonsynonymous SNV	Vmn1r4:NM_134176:exon1:c.T428G:p.F143C	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.867900931	1	0.9992223	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	57210453	12A2p6	cell line	sgMsh2	57210453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	1301	0	0	NA	exonic	Vmn1r13	nonsynonymous SNV	Vmn1r13:NM_053235:exon1:c.T596C:p.M199T	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.593360841	2	1	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	57432499	12A2p6	cell line	sgMsh2	57432499	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	458	0	0	NA	exonic	Vmn1r20	nonsynonymous SNV	Vmn1r20:NM_001101533:exon1:c.A809T:p.Y270F	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	2	0.9999983	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	315	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.606645038	2	5.35E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	444	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.828048337	1	0.997007	GTA	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr6	58956728	12A2p6	cell line	sgMsh2	58956728	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	137	0	0	NA	exonic	Fam13a	synonymous SNV	Fam13a:NM_153574:exon9:c.C876A:p.A292A	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.544652115	2	0.9998784	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	188	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.717346688	2	0.9746877	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr6	65120012	12A2p6	cell line	sgMsh2	65120012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	160	0	0	NA	exonic	Hpgds	nonsynonymous SNV	Hpgds:NM_019455:exon6:c.A512G:p.Y171C	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.952034184	1	0.9999554	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.048	557	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.212547167	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	67486278	12A2p6	cell line	sgMsh2	67486278	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	210	0	0	NA	exonic	Il23r	nonsynonymous SNV	Il23r:NM_144548:exon3:c.G230T:p.R77M	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.872328997	1	0.9989548	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	67535275	12A2p6	cell line	sgMsh2	67535275	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	125	0	0	NA	exonic	Tacstd2	synonymous SNV	Tacstd2:NM_020047:exon1:c.A432C:p.R144R	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.597788906	2	0.9990419	TTC	synonymous	NA	NA	NA	NA
M3_p20	chr6	71134110	12A2p6	cell line	sgMsh2	71134110	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	139	0	0	NA	exonic	Thnsl2	nonsynonymous SNV	"Thnsl2:NM_001033929:exon5:c.T773G:p.V258G,Thnsl2:NM_178413:exon6:c.T773G:p.V258G"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.597788906	2	0.9996393	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	352	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.938749986	1	1.21E-08	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	377	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.606645038	2	1.07E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	103	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.526939851	2	0.9979937	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	72555640	12A2p6	cell line	sgMsh2	72555640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	154	0	0	NA	exonic	Capg	nonsynonymous SNV	"Capg:NM_001042534:exon3:c.C187A:p.L63M,Capg:NM_001271395:exon3:c.C187A:p.L63M,Capg:NM_007599:exon3:c.C187A:p.L63M,Capg:NM_001271415:exon4:c.C187A:p.L63M"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.673066028	2	0.9933529	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	158	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.929893855	1	0.999836	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	73044721	12A2p6	cell line	sgMsh2	73044721	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	160	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon64:c.G10617T:p.M3539I	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.903325459	1	0.9993562	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	73138717	12A2p6	cell line	sgMsh2	73138717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	251	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon31:c.T4697C:p.F1566S	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.819192205	1	0.9640715	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	73469521	12A2p6	cell line	sgMsh2	73469521	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	392	0	0	NA	exonic	4931417E11Rik	nonsynonymous SNV	4931417E11Rik:NM_025737:exon1:c.A44T:p.K15I	6qC1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.588932775	2	1.00E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr6	76882721	12A2p6	cell line	sgMsh2	76882721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	160	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon18:c.A2547G:p.A849A,Ctnna2:NM_009819:exon19:c.A2691G:p.A897A,Ctnna2:NM_145732:exon19:c.A2547G:p.A849A,Ctnna2:NM_001109764:exon20:c.A2691G:p.A897A"	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.562364379	2	0.9999831	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr6	78376505	12A2p6	cell line	sgMsh2	78376505	-	T	Insertion	Mutect2;Vardict	2	0.118	223	0	0	NA	exonic	Reg3d	frameshift insertion	"Reg3d:NM_001161741:exon4:c.215dupA:p.N72Kfs*8,Reg3d:NM_013893:exon5:c.353dupA:p.N118Kfs*8"	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.522511785	NA	NA	CAT	frameshift	TCCA	9	TCCATCCAT	1
M3_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	145	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	0.965318382	1	0.99995	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	83079167	12A2p6	cell line	sgMsh2	83079167	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	331	0	0	NA	exonic	Pcgf1	nonsynonymous SNV	Pcgf1:NM_197992:exon3:c.T215C:p.M72T	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.828048337	1	0.9916695	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	83671721	12A2p6	cell line	sgMsh2	83671721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	271	0	0	NA	exonic	Cd207	nonsynonymous SNV	Cd207:NM_144943:exon6:c.T958G:p.F320V	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.664209896	2	0.9999829	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	83675691	12A2p6	cell line	sgMsh2	83675691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	205	0	0	NA	exonic	Cd207	synonymous SNV	Cd207:NM_144943:exon3:c.T456C:p.S152S	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.460518861	2	0.9787722	GAC	synonymous	NA	NA	NA	NA
M3_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	179	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.588932775	2	0.9999871	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	86449857	12A2p6	cell line	sgMsh2	86449857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	268	0	0	NA	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon5:c.A1001G:p.K334R,C87436:NM_001243742:exon5:c.A1031G:p.K344R,C87436:NM_001364555:exon5:c.A1031G:p.K344R,C87436:NM_001364556:exon5:c.A1031G:p.K344R,C87436:NM_001364557:exon5:c.A1031G:p.K344R,C87436:NM_001364558:exon5:c.A1001G:p.K334R,C87436:NM_146170:exon5:c.A1031G:p.K344R"	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.832476403	1	0.990168	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	87465634	12A2p6	cell line	sgMsh2	87465634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	108	0	0	NA	exonic	Arhgap25	nonsynonymous SNV	"Arhgap25:NM_001286610:exon8:c.A800C:p.K267T,Arhgap25:NM_001037727:exon9:c.A1067C:p.K356T,Arhgap25:NM_175476:exon9:c.A989C:p.K330T"	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.74834315	2	0.5497139	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	87845519	12A2p6	cell line	sgMsh2	87845519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	500	0	0	NA	exonic	Cnbp	nonsynonymous SNV	"Cnbp:NM_001109745:exon3:c.T142C:p.Y48H,Cnbp:NM_001109746:exon3:c.T142C:p.Y48H,Cnbp:NM_001347325:exon3:c.T163C:p.Y55H,Cnbp:NM_001355195:exon3:c.T145C:p.Y49H,Cnbp:NM_013493:exon3:c.T163C:p.Y55H"	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.606645038	2	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	76	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.38524174	3	0.676943	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.196	21	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.867900931	1	0.09592279	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	89332172	12A2p6	cell line	sgMsh2	89332172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	191	0	0	NA	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon18:c.T3424C:p.F1142L	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.863472865	1	0.9970471	AAG	nonsynonymous	AGGA	8	AGGAAGGA	NA
M3_p20	chr6	89977074	12A2p6	cell line	sgMsh2	89977074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	428	0	0	NA	exonic	Vmn1r46	synonymous SNV	Vmn1r46:NM_053229:exon1:c.T904C:p.L302L	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	2	0.999654	ATT	synonymous	NA	NA	NA	NA
M3_p20	chr6	90370356	12A2p6	cell line	sgMsh2	90370356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	86	0	0	NA	exonic	Zxdc	nonsynonymous SNV	"Zxdc:NM_030260:exon1:c.A698G:p.H233R,Zxdc:NM_173002:exon1:c.A698G:p.H233R"	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.695206358	2	0.7964764	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	196	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.602216972	2	0.9999909	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	91914790	12A2p6	cell line	sgMsh2	91914790	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	226	0	0	NA	exonic	4930590J08Rik	nonsynonymous SNV	4930590J08Rik:NM_198668:exon4:c.A32C:p.Y11S	6qD1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.619929236	2	0.9999954	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	481	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.770483479	2	0.9657105	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	106353647	12A2p6	cell line	sgMsh2	106353647	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	414	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon5:c.C225T:p.F75F,Cntn4:NM_001109751:exon6:c.C225T:p.F75F,Cntn4:NM_001364566:exon6:c.C225T:p.F75F,Cntn4:NM_001109749:exon7:c.C225T:p.F75F,Cntn4:NM_173004:exon7:c.C225T:p.F75F"	6qE1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.557936313	2	1.00E-09	TCC	synonymous	NA	NA	NA	NA
M3_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	214	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.757199282	2	0.8143999	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M3_p20	chr6	108485320	12A2p6	cell line	sgMsh2	108485320	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	281	0	0	NA	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon49:c.C6342T:p.N2114N	6qE1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.588932775	2	8.65E-09	ACA	synonymous	NA	NA	NA	NA
M3_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	166	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.783767677	1	0.6812155	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	111495710	12A2p6	cell line	sgMsh2	111495710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	461	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.C2509T:p.L837L,Grm7:NM_177328:exon9:c.C2509T:p.L837L"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.863472865	1	0.9999904	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr6	112665281	12A2p6	cell line	sgMsh2	112665281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	461	0	0	NA	exonic	Rad18	nonsynonymous SNV	"Rad18:NM_001167730:exon9:c.T1024C:p.Y342H,Rad18:NM_001381931:exon9:c.T1024C:p.Y342H,Rad18:NM_001381932:exon9:c.T1024C:p.Y342H,Rad18:NM_021385:exon9:c.T1024C:p.Y342H,Rad18:NM_001381933:exon10:c.T628C:p.Y210H"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.712918622	2	0.999995	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	113137980	12A2p6	cell line	sgMsh2	113137980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	218	0	0	NA	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.A2561C:p.K854T,Setd5:NM_028385:exon17:c.A2504C:p.K835T"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.810336073	1	0.9189363	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	113176608	12A2p6	cell line	sgMsh2	113176608	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	174	0	0	NA	exonic	Lhfpl4	frameshift deletion	Lhfpl4:NM_177763:exon3:c.481delG:p.A161Pfs*60	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.828048337	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr6	113315417	12A2p6	cell line	sgMsh2	113315417	A	-	Deletion	Mutect2;Vardict	2	0.11	94	0	0	NA	exonic	Brpf1	frameshift deletion	"Brpf1:NM_001282126:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282127:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_001282128:exon3:c.1423delA:p.S476Afs*17,Brpf1:NM_030178:exon3:c.1423delA:p.S476Afs*17"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.487087257	NA	NA	TAA	frameshift	NA	NA	NA	-1
M3_p20	chr6	114304017	12A2p6	cell line	sgMsh2	114304017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	170	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon6:c.C531T:p.Y177Y	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.712918622	2	0.9673931	ACA	synonymous	NA	NA	NA	NA
M3_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	259	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.717346688	2	0.9966528	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	115801863	12A2p6	cell line	sgMsh2	115801863	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	439	0	0	NA	exonic	Cand2	synonymous SNV	Cand2:NM_025958:exon14:c.C3387T:p.I1129I	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.646497632	2	1.44E-09	TCA	synonymous	NA	NA	NA	NA
M3_p20	chr6	115853161	12A2p6	cell line	sgMsh2	115853161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	185	0	0	NA	exonic	Mbd4	nonsynonymous SNV	Mbd4:NM_010774:exon1:c.T50C:p.V17A	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.721774754	2	0.9638696	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	115949743	12A2p6	cell line	sgMsh2	115949743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	305	0	0	NA	exonic;splicing	H1f8;H1f8	nonsynonymous SNV	H1f8:NM_001346702:exon4:c.T728C:p.V243A	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.513655653	2	0.999999	GTA	nonsynonymous	AGGT	12	AGGTAGGTAGGT	NA
M3_p20	chr6	116314375	12A2p6	cell line	sgMsh2	116314375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	284	0	0	NA	exonic	Zfand4	synonymous SNV	"Zfand4:NM_001290339:exon4:c.T588C:p.S196S,Zfand4:NM_001290338:exon6:c.T894C:p.S298S,Zfand4:NM_001309446:exon7:c.T1269C:p.S423S"	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.828048337	1	0.9872763	GTG	synonymous	GAGCA	11	GAGCAGAGCAG	NA
M3_p20	chr6	116540700	12A2p6	cell line	sgMsh2	116540700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	475	0	0	NA	exonic	Olfr213	synonymous SNV	Olfr213:NM_001011801:exon1:c.A246G:p.T82T	6qE3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.673066028	2	5.95E-09	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr6	118088258	12A2p6	cell line	sgMsh2	118088258	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	411	0	0	NA	exonic	Rasgef1a	nonsynonymous SNV	"Rasgef1a:NM_001316749:exon10:c.A1182C:p.K394N,Rasgef1a:NM_001362103:exon10:c.A1233C:p.K411N,Rasgef1a:NM_001362104:exon10:c.A1182C:p.K394N,Rasgef1a:NM_027526:exon10:c.A1206C:p.K402N,Rasgef1a:NM_001362105:exon11:c.A1215C:p.K405N"	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.912181591	1	3.01E-08	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Vardict	2	0.154	145	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.68192216	NA	NA	CGT	frameshift	NA	NA	NA	-1
M3_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	147	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.845760601	1	0.9819378	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M3_p20	chr6	119749857	12A2p6	cell line	sgMsh2	119749857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	277	0	0	NA	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon12:c.T2138C:p.M713T	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.699634424	2	0.9996276	CAT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr6	121387793	12A2p6	cell line	sgMsh2	121387793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	244	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon7:c.A1636G:p.N546D,Iqsec3:NM_001033354:exon8:c.A2536G:p.N846D"	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.836904469	1	0.9912277	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	121870583	12A2p6	cell line	sgMsh2	121870583	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	520	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon16:c.G1919T:p.W640L	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.952034184	1	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	122063608	12A2p6	cell line	sgMsh2	122063608	-	A	Insertion	Mutect2;Vardict	2	0.162	282	0	0	NA	exonic	Mug2	frameshift insertion	Mug2:NM_008646:exon18:c.2117dupA:p.S709Ifs*2	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.717346688	NA	NA	GCA	frameshift	NA	NA	NA	1
M3_p20	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	109	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.553508247	2	0.9991872	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	123124976	12A2p6	cell line	sgMsh2	123124976	G	T	SNV	Mutect2;MuSe;Vardict	3	0.154	381	0	0	NA	exonic	Clec4a2	nonsynonymous SNV	"Clec4a2:NM_001170333:exon2:c.G89T:p.R30I,Clec4a2:NM_011999:exon2:c.G89T:p.R30I,Clec4a2:NM_001170332:exon3:c.G89T:p.R30I"	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.68192216	2	0.999999	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	123331592	12A2p6	cell line	sgMsh2	123331592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	493	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon5:c.T1627C:p.F543L	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.686350226	2	2.22E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	123704621	12A2p6	cell line	sgMsh2	123704621	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	632	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon2:c.A487T:p.I163F	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.792623809	2	0.5368331	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	123825293	12A2p6	cell line	sgMsh2	123825293	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	244	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon5:c.A1650C:p.P550P	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.655353764	2	0.9999709	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr6	124061284	12A2p6	cell line	sgMsh2	124061284	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	372	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon6:c.C1817T:p.A606V	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.699634424	2	0.9999864	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	124861299	12A2p6	cell line	sgMsh2	124861299	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	224	0	0	NA	exonic	Gpr162	synonymous SNV	"Gpr162:NM_013533:exon2:c.C387T:p.N129N,Gpr162:NM_001355257:exon3:c.C387T:p.N129N"	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.624357302	2	0.9999927	CGT	synonymous	NA	NA	NA	NA
M3_p20	chr6	124964725	12A2p6	cell line	sgMsh2	124964725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	157	0	0	NA	exonic	Cops7a	nonsynonymous SNV	"Cops7a:NM_001164089:exon2:c.A161G:p.E54G,Cops7a:NM_001355541:exon2:c.A161G:p.E54G,Cops7a:NM_001355542:exon2:c.A161G:p.E54G,Cops7a:NM_001379119:exon2:c.A161G:p.E54G,Cops7a:NM_001379120:exon2:c.A161G:p.E54G,Cops7a:NM_001379122:exon2:c.A161G:p.E54G,Cops7a:NM_001379123:exon2:c.A161G:p.E54G,Cops7a:NM_001379124:exon2:c.A161G:p.E54G,Cops7a:NM_001379125:exon2:c.A161G:p.E54G,Cops7a:NM_012003:exon2:c.A161G:p.E54G"	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.999996	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	125101957	12A2p6	cell line	sgMsh2	125101957	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	115	0	0	NA	exonic	Chd4	nonsynonymous SNV	"Chd4:NM_001346610:exon7:c.C854A:p.A285D,Chd4:NM_145979:exon7:c.C854A:p.A285D"	6qF2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.74834315	2	0.5809965	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	125604260	12A2p6	cell line	sgMsh2	125604260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	82	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon15:c.T1860C:p.D620D	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.9993522	ATT	synonymous	NA	NA	NA	NA
M3_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	445	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.797051875	1	0.7490035	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	158	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.464946927	2	0.9754582	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	283	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.916609657	1	0.9999976	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	127768716	12A2p6	cell line	sgMsh2	127768716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	64	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon1:c.T32C:p.L11P	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.93432192	1	0.9907849	GAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M3_p20	chr6	128489128	12A2p6	cell line	sgMsh2	128489128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	87	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon29:c.A3588G:p.Q1196Q	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.9995388	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr6	129739153	12A2p6	cell line	sgMsh2	129739153	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	438	0	0	NA	exonic	Klri2	nonsynonymous SNV	Klri2:NM_177155:exon2:c.G222T:p.W74C	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.832476403	1	0.9983709	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	131685363	12A2p6	cell line	sgMsh2	131685363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	101	0	0	NA	exonic	Tas2r104	nonsynonymous SNV	Tas2r104:NM_207011:exon1:c.A382G:p.K128E	6qF3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	0.999822	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	132855569	12A2p6	cell line	sgMsh2	132855569	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	598	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.G132A:p.V44V	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.686350226	2	1.34E-09	TGG	synonymous	NA	NA	NA	NA
M3_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	400	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	74	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.606645038	2	0.9595373	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	294	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.65978183	2	0.9999963	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	135241314	12A2p6	cell line	sgMsh2	135241314	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	98	0	0	NA	exonic	Gsg1	synonymous SNV	"Gsg1:NM_001080552:exon4:c.T583C:p.L195L,Gsg1:NM_001080553:exon4:c.T574C:p.L192L,Gsg1:NM_010352:exon5:c.T574C:p.L192L"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.438378531	2	0.8088972	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr6	135242186	12A2p6	cell line	sgMsh2	135242186	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	145	0	0	NA	exonic	Gsg1	nonsynonymous SNV	"Gsg1:NM_001080552:exon3:c.C364T:p.P122S,Gsg1:NM_001080553:exon3:c.C355T:p.P119S,Gsg1:NM_010352:exon4:c.C355T:p.P119S"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.513655653	2	0.999356	GGT	nonsynonymous	TGG	8	TGGTGGTG	NA
M3_p20	chr6	135733866	12A2p6	cell line	sgMsh2	135733866	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	199	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon15:c.C2681T:p.T894I,Grin2b:NM_008171:exon15:c.C2681T:p.T894I"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.859044799	1	0.9966322	TGT	nonsynonymous	GT	8	GTGTGTGT	NA
M3_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	229	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.721774754	2	0.9888456	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	136587336	12A2p6	cell line	sgMsh2	136587336	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	341	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon9:c.T2552C:p.I851T	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.788195743	1	0.5537977	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	235	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.584504709	2	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	295	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.429522399	3	0.5341659	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M3_p20	chr6	139843996	12A2p6	cell line	sgMsh2	139843996	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.164	107	0	0	NA	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon2:c.G114T:p.K38N	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.72620282	2	9.96E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	141250253	12A2p6	cell line	sgMsh2	141250253	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	23	0	0	NA	exonic	Pde3a	nonsynonymous SNV	Pde3a:NM_018779:exon1:c.G664A:p.A222T	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	3	1	1	0.9654147	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.735058952	2	0.9199817	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	142003391	12A2p6	cell line	sgMsh2	142003391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	318	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon2:c.T258C:p.P86P	6qG2	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.526939851	2	0.9999999	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.346	437	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M3_p20	chr6	146224060	12A2p6	cell line	sgMsh2	146224060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	307	0	0	NA	exonic	Itpr2	synonymous SNV	"Itpr2:NM_010586:exon44:c.T6192C:p.D2064D,Itpr2:NM_019923:exon45:c.T6291C:p.D2097D"	6qG3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.65978183	2	0.999998	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr6	148294561	12A2p6	cell line	sgMsh2	148294561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	300	0	0	NA	exonic	Tmtc1	nonsynonymous SNV	"Tmtc1:NM_001347518:exon10:c.A1552G:p.T518A,Tmtc1:NM_198967:exon10:c.A1552G:p.T518A"	6qG3	chr6-3373003-148425959	6	4	2	0.91	4.029540036	NA	1	0.646497632	2	0.9999993	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1489	564	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M3_p20	chr6	149166910	12A2p6	cell line	sgMsh2	149166910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	exonic	Amn1	nonsynonymous SNV	"Amn1:NM_001113424:exon6:c.A599G:p.N200S,Amn1:NM_001356344:exon6:c.A470G:p.N157S,Amn1:NM_001381983:exon6:c.A575G:p.N192S"	6qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	359	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	3659382	12A2p6	cell line	sgMsh2	3659382	G	A	SNV	Mutect2;Vardict	2	0.067	97	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon17:c.G2033A:p.G678E	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.29668042	3	0.997636	GGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	4148627	12A2p6	cell line	sgMsh2	4148627	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	62	0	0	NA	exonic	Leng9	nonsynonymous SNV	Leng9:NM_175529:exon1:c.T1049C:p.V350A	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.93163	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	4486401	12A2p6	cell line	sgMsh2	4486401	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	216	0	0	NA	exonic	Ppp1r12c	nonsynonymous SNV	Ppp1r12c:NM_029834:exon6:c.A920G:p.D307G	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	4628730	12A2p6	cell line	sgMsh2	4628730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	0	0	NA	exonic	Tmem86b	nonsynonymous SNV	Tmem86b:NM_023440:exon3:c.C322T:p.H108Y	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	1	0.9959514	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	4771071	12A2p6	cell line	sgMsh2	4771071	A	-	Deletion	Strelka2;Vardict	2	0.2174	23	0	0	NA	exonic	Fam71e2	frameshift deletion	Fam71e2:NM_172895:exon1:c.41delT:p.F14Sfs*42	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.962661543	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M3_p20	chr7	4933367	12A2p6	cell line	sgMsh2	4933367	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	82	0	0	NA	exonic	Ssc5d	synonymous SNV	Ssc5d:NM_173008:exon9:c.G1611A:p.T537T	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.9963924	CGG	synonymous	NA	NA	NA	NA
M3_p20	chr7	5029759	12A2p6	cell line	sgMsh2	5029759	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	272	0	0	NA	exonic	Zfp865	nonsynonymous SNV	"Zfp865:NM_001033383:exon2:c.T742C:p.Y248H,Zfp865:NM_001290426:exon2:c.T742C:p.Y248H"	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	5410859	12A2p6	cell line	sgMsh2	5410859	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	861	0	0	NA	exonic	Vmn1r58	frameshift deletion	Vmn1r58:NM_030739:exon2:c.371delA:p.K124Rfs*2	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	G	5	GGGGG	-1
M3_p20	chr7	5454550	12A2p6	cell line	sgMsh2	5454550	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	894	0	0	NA	exonic	Vmn1r59	synonymous SNV	Vmn1r59:NM_207543:exon1:c.A210T:p.P70P	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.655353764	2	1	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr7	6060633	12A2p6	cell line	sgMsh2	6060633	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.236	192	0	0	NA	exonic	Nlrp4c	synonymous SNV	Nlrp4c:NM_031389:exon2:c.C39T:p.Y13Y	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	ACT	synonymous	NA	NA	NA	NA
M3_p20	chr7	6460719	12A2p6	cell line	sgMsh2	6460719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	429	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T209G:p.L70R	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	1.01E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	6570449	12A2p6	cell line	sgMsh2	6570449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	324	0	0	NA	exonic	Olfr1350	nonsynonymous SNV	Olfr1350:NM_146389:exon1:c.T457C:p.F153L	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	1	1.05E-09	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	177	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	1	1	0.999999	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr7	7289108	12A2p6	cell line	sgMsh2	7289108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	152	0	0	NA	exonic	Clcn4	nonsynonymous SNV	"Clcn4:NM_001357104:exon8:c.A1460G:p.Y487C,Clcn4:NM_001302386:exon9:c.A1523G:p.Y508C,Clcn4:NM_001357102:exon10:c.A1703G:p.Y568C,Clcn4:NM_001357103:exon11:c.A1703G:p.Y568C,Clcn4:NM_011334:exon11:c.A1703G:p.Y568C,Clcn4:NM_001302387:exon12:c.A1610G:p.Y537C"	7qA1	chr7-3489139-7297085	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.6993499	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	8367479	12A2p6	cell line	sgMsh2	8367479	T	C	SNV	Mutect2;Vardict	2	0.048	410	0	0	NA	exonic	Vmn2r44	nonsynonymous SNV	"Vmn2r44:NM_001105074:exon6:c.A2567G:p.K856R,Vmn2r44:NM_001385059:exon6:c.A2417G:p.K806R"	7qA1	chr7-7312117-9989431	8.14604413	6.14604413	2	0.91	4.029540036	NA	1	0.212547167	3	1	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	10100105	12A2p6	cell line	sgMsh2	10100105	A	C	SNV	Mutect2;Vardict	2	0.096	517	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.T1005G:p.N335K	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.425094333	3	0.9328727	AAT	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr7	11009550	12A2p6	cell line	sgMsh2	11009550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	500	0	0	NA	exonic	Zscan4c	nonsynonymous SNV	Zscan4c:NM_001013765:exon4:c.T1075C:p.S359P	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	11847249	12A2p6	cell line	sgMsh2	11847249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	430	0	0	NA	exonic	Vmn1r74	nonsynonymous SNV	Vmn1r74:NM_134206:exon1:c.A475G:p.T159A	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	13025408	12A2p6	cell line	sgMsh2	13025408	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	207	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon2:c.G448A:p.A150T	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	13306267	12A2p6	cell line	sgMsh2	13306267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	301	0	0	NA	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon24:c.T2198C:p.I733T,Lig1:NM_001199310:exon24:c.T2198C:p.I733T,Lig1:NM_010715:exon24:c.T2198C:p.I733T"	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.22E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	14425549	12A2p6	cell line	sgMsh2	14425549	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	86	0	0	NA	exonic	Sult2a8	synonymous SNV	"Sult2a8:NM_001199306:exon3:c.C144T:p.H48H,Sult2a8:NM_175250:exon3:c.C144T:p.H48H"	7qA1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9995064	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr7	15397023	12A2p6	cell line	sgMsh2	15397023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	427	0	0	NA	exonic	Obox2	nonsynonymous SNV	Obox2:NM_145708:exon2:c.T179G:p.L60R	7qA2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.566792445	2	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	15945980	12A2p6	cell line	sgMsh2	15945980	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.333	13	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T74C:p.L25P	7qA2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9337146	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	16079319	12A2p6	cell line	sgMsh2	16079319	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.273	26	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001099277:exon3:c.T1896C:p.T632T,Zfp541:NM_001347559:exon3:c.T1896C:p.T632T"	7qA2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9716191	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr7	16083478	12A2p6	cell line	sgMsh2	16083478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	91	0	0	NA	exonic	Zfp541	synonymous SNV	"Zfp541:NM_001347559:exon6:c.T2847C:p.P949P,Zfp541:NM_001099277:exon8:c.T3030C:p.P1010P"	7qA2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr7	16945364	12A2p6	cell line	sgMsh2	16945364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	exonic	Pnmal2	nonsynonymous SNV	Pnmal2:NM_001099636:exon1:c.T272C:p.I91T	7qA2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	18482720	12A2p6	cell line	sgMsh2	18482720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	466	0	0	NA	exonic	Psg26	nonsynonymous SNV	Psg26:NM_001029893:exon2:c.T193C:p.F65L	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	18682651	12A2p6	cell line	sgMsh2	18682651	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.265	334	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon3:c.A539G:p.E180G	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.048	596	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.212547167	3	1	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	18794266	12A2p6	cell line	sgMsh2	18794266	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	422	0	0	NA	exonic	Psg19	frameshift deletion	Psg19:NM_011964:exon3:c.551delC:p.S184Cfs*7	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CGA	frameshift	NA	NA	NA	-1
M3_p20	chr7	18818658	12A2p6	cell line	sgMsh2	18818658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	559	0	0	NA	exonic	Psg17	nonsynonymous SNV	Psg17:NM_007677:exon3:c.A691G:p.N231D	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	19000570	12A2p6	cell line	sgMsh2	19000570	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	exonic	Mypop	nonsynonymous SNV	Mypop:NM_145579:exon3:c.G591T:p.K197N	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9939241	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	97	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997663	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	19414281	12A2p6	cell line	sgMsh2	19414281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	0	0	NA	exonic	Ckm	synonymous SNV	Ckm:NM_007710:exon2:c.A144G:p.P48P	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9990958	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	169	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9999953	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	19918786	12A2p6	cell line	sgMsh2	19918786	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	230	0	0	NA	exonic	Pvr	nonsynonymous SNV	Pvr:NM_027514:exon2:c.A203C:p.K68T	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	2.86E-08	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.251	207	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	23435850	12A2p6	cell line	sgMsh2	23435850	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	202	0	0	NA	exonic	Nlrp5	nonsynonymous SNV	"Nlrp5:NM_001039143:exon13:c.G2917T:p.G973C,Nlrp5:NM_001305857:exon13:c.G2965T:p.G989C,Nlrp5:NM_011860:exon14:c.G2965T:p.G989C"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999998	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	24433386	12A2p6	cell line	sgMsh2	24433386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	0	0	NA	exonic	Irgc1	nonsynonymous SNV	"Irgc1:NM_001358033:exon2:c.C5T:p.A2V,Irgc1:NM_001358034:exon2:c.C5T:p.A2V,Irgc1:NM_199013:exon3:c.C5T:p.A2V"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9984335	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	24566482	12A2p6	cell line	sgMsh2	24566482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	153	0	0	NA	exonic	Xrcc1	nonsynonymous SNV	"Xrcc1:NM_001360169:exon5:c.A304G:p.I102V,Xrcc1:NM_001360168:exon7:c.A586G:p.I196V,Xrcc1:NM_009532:exon7:c.A589G:p.I197V"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999948	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	24758344	12A2p6	cell line	sgMsh2	24758344	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	85	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon4:c.T488G:p.L163R	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994717	GAG	nonsynonymous	CCTGAG	12	CCTGAGCCTGAG	NA
M3_p20	chr7	24989809	12A2p6	cell line	sgMsh2	24989809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	53	0	0	NA	exonic	Atp1a3	nonsynonymous SNV	"Atp1a3:NM_001290469:exon13:c.T1786C:p.C596R,Atp1a3:NM_001374627:exon13:c.T1825C:p.C609R"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9953643	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	146	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999917	CGC	synonymous	C	5	CCCCC	NA
M3_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	31	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9796339	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	25329953	12A2p6	cell line	sgMsh2	25329953	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	46	0	0	NA	exonic	Megf8	synonymous SNV	Megf8:NM_001160400:exon6:c.G921A:p.V307V	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9925593	TGT	synonymous	NA	NA	NA	NA
M3_p20	chr7	25669416	12A2p6	cell line	sgMsh2	25669416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	0	0	NA	exonic	Tmem91	nonsynonymous SNV	Tmem91:NM_177102:exon4:c.T443C:p.V148A	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9986324	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	26199170	12A2p6	cell line	sgMsh2	26199170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	422	0	0	NA	exonic	Cyp2b9	nonsynonymous SNV	Cyp2b9:NM_010000:exon6:c.T949C:p.Y317H	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.9999999	GTA	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	295	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9996748	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	26814787	12A2p6	cell line	sgMsh2	26814787	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	177	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon5:c.A817C:p.I273L	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.999999	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	27032542	12A2p6	cell line	sgMsh2	27032542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	319	0	0	NA	exonic	Cyp2a12	nonsynonymous SNV	Cyp2a12:NM_133657:exon5:c.T707C:p.I236T	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.06E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	27434265	12A2p6	cell line	sgMsh2	27434265	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	59	0	0	NA	exonic	Sptbn4	nonsynonymous SNV	Sptbn4:NM_032610:exon3:c.G265T:p.D89Y	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9745386	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	27673917	12A2p6	cell line	sgMsh2	27673917	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	17	0	0	NA	exonic	Map3k10	synonymous SNV	Map3k10:NM_001290528:exon1:c.C108T:p.T36T	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9488315	GGG	synonymous	NA	NA	NA	NA
M3_p20	chr7	28178283	12A2p6	cell line	sgMsh2	28178283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	179	0	0	NA	exonic	Fbl	nonsynonymous SNV	Fbl:NM_007991:exon7:c.T779C:p.L260P	7qA3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	28396318	12A2p6	cell line	sgMsh2	28396318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	327	0	0	NA	exonic	Paf1	nonsynonymous SNV	Paf1:NM_019458:exon9:c.A671G:p.D224G	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9999981	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.444	10	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9194614	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	29377591	12A2p6	cell line	sgMsh2	29377591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	86	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon10:c.A2755G:p.T919A	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995064	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	29386096	12A2p6	cell line	sgMsh2	29386096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	279	0	0	NA	exonic	Sipa1l3	nonsynonymous SNV	Sipa1l3:NM_001081028:exon8:c.T2075C:p.V692A	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.99E-09	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	29845231	12A2p6	cell line	sgMsh2	29845231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	370	0	0	NA	exonic	Zfp940	nonsynonymous SNV	Zfp940:NM_173738:exon5:c.T1250C:p.V417A	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	1.03E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	30245292	12A2p6	cell line	sgMsh2	30245292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	31	0	0	NA	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon22:c.A2734G:p.S912G	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9796339	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	30591222	12A2p6	cell line	sgMsh2	30591222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	95	0	0	NA	exonic	Zbtb32	nonsynonymous SNV	Zbtb32:NM_021397:exon2:c.T647C:p.L216P	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997323	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	30870419	12A2p6	cell line	sgMsh2	30870419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	164	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon7:c.T1497C:p.D499D,Cd22:NM_001043317:exon9:c.T1497C:p.D499D"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999975	AAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	30922543	12A2p6	cell line	sgMsh2	30922543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	333	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.A217G:p.N73D	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.03E-09	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	30958277	12A2p6	cell line	sgMsh2	30958277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	160	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon7:c.A1257G:p.P419P,Lsr:NM_001164184:exon8:c.A1404G:p.P468P,Lsr:NM_017405:exon9:c.A1461G:p.P487P"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999968	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr7	30958754	12A2p6	cell line	sgMsh2	30958754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	148	0	0	NA	exonic	Lsr	synonymous SNV	"Lsr:NM_001164185:exon6:c.A909G:p.E303E,Lsr:NM_001164184:exon7:c.A1056G:p.E352E,Lsr:NM_017405:exon8:c.A1113G:p.E371E"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9996012	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr7	31099035	12A2p6	cell line	sgMsh2	31099035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	93	0	0	NA	exonic	Hpn	stoploss	"Hpn:NM_001276269:exon13:c.A1338C:p.X446C,Hpn:NM_008281:exon13:c.A1251C:p.X417C,Hpn:NM_001110252:exon14:c.A1311C:p.X437C"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996933	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	287	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.57E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	291	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.921037723	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr7	35203672	12A2p6	cell line	sgMsh2	35203672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	100	0	0	NA	exonic	Lrp3	synonymous SNV	Lrp3:NM_001024707:exon6:c.A1248G:p.Q416Q	7qB2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998094	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	60	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.650925698	2	0.7904035	ATA	synonymous	NA	NA	NA	NA
M3_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	101	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	36768908	12A2p6	cell line	sgMsh2	36768908	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.224	31	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.G321A:p.E107E	7qB2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.991886778	1	0.9778423	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr7	36770154	12A2p6	cell line	sgMsh2	36770154	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	49	0	0	NA	exonic	Tshz3	nonsynonymous SNV	Tshz3:NM_172298:exon2:c.C1567A:p.L523I	7qB2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.9831993	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	38267472	12A2p6	cell line	sgMsh2	38267472	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	66	0	0	NA	exonic	Pop4	nonsynonymous SNV	Pop4:NM_025390:exon3:c.A184T:p.T62S	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.673066028	2	0.7571103	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	38519534	12A2p6	cell line	sgMsh2	38519534	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	256	0	0	NA	exonic	Gm5591	nonsynonymous SNV	Gm5591:NM_001013810:exon3:c.G1914T:p.K638N	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.624357302	2	0.9999989	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	41872661	12A2p6	cell line	sgMsh2	41872661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	193	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon1:c.A10G:p.I4V	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	ATC	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	729	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr7	43586411	12A2p6	cell line	sgMsh2	43586411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	268	0	0	NA	exonic	Zfp719	nonsynonymous SNV	"Zfp719:NM_001357769:exon3:c.C196A:p.L66M,Zfp719:NM_172482:exon3:c.C196A:p.L66M"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	3.08E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	43796133	12A2p6	cell line	sgMsh2	43796133	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	78	0	0	NA	exonic	Klk9	frameshift deletion	Klk9:NM_028660:exon5:c.746delA:p.N251delinsTEFMLRWTDWRGRRM	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr7	44466979	12A2p6	cell line	sgMsh2	44466979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	47	0	0	NA	exonic	Aspdh	nonsynonymous SNV	Aspdh:NM_026690:exon5:c.A539G:p.Y180C	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	118	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.999944	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	44973860	12A2p6	cell line	sgMsh2	44973860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	72	0	0	NA	exonic	Cpt1c	nonsynonymous SNV	"Cpt1c:NM_001252470:exon2:c.A8G:p.E3G,Cpt1c:NM_001357670:exon2:c.A8G:p.E3G,Cpt1c:NM_153679:exon2:c.A8G:p.E3G"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.68192216	2	0.7653904	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	45091511	12A2p6	cell line	sgMsh2	45091511	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.139	57	0	0	NA	exonic	Rcn3	nonsynonymous SNV	"Rcn3:NM_001355045:exon2:c.G172T:p.A58S,Rcn3:NM_026555:exon2:c.G172T:p.A58S"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.61550117	2	0.8651899	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	45147281	12A2p6	cell line	sgMsh2	45147281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	91	0	0	NA	exonic	Aldh16a1	nonsynonymous SNV	Aldh16a1:NM_145954:exon7:c.A793G:p.R265G	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	CTG	nonsynonymous	CCTG	9	CCTGCCTGC	NA
M3_p20	chr7	45168825	12A2p6	cell line	sgMsh2	45168825	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	106	0	0	NA	exonic	Slc17a7	nonsynonymous SNV	Slc17a7:NM_182993:exon2:c.G173A:p.G58D	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998733	GGC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M3_p20	chr7	45194020	12A2p6	cell line	sgMsh2	45194020	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	61	0	0	NA	exonic	Kash5	nonsynonymous SNV	Kash5:NM_201374:exon7:c.C779T:p.A260V	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9973041	CGC	nonsynonymous	CCT	8	CCTCCTCC	NA
M3_p20	chr7	45327334	12A2p6	cell line	sgMsh2	45327334	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.266	22	0	0	NA	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon4:c.T389C:p.V130A	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	9.79E-06	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	99	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.774911545	1	0.7037239	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	46195657	12A2p6	cell line	sgMsh2	46195657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	69	0	0	NA	exonic	Ush1c	stoploss	Ush1c:NM_153677:exon27:c.A2733C:p.X911C	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9984335	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	46310014	12A2p6	cell line	sgMsh2	46310014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	337	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon56:c.T8581C:p.Y2861H	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	46378336	12A2p6	cell line	sgMsh2	46378336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	33	0	0	NA	exonic	Myod1	nonsynonymous SNV	Myod1:NM_010866:exon3:c.A899G:p.D300G	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9821776	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	46427454	12A2p6	cell line	sgMsh2	46427454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	exonic	Kcnc1	nonsynonymous SNV	"Kcnc1:NM_001112739:exon2:c.G679A:p.V227I,Kcnc1:NM_008421:exon2:c.G679A:p.V227I"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	CGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	46662078	12A2p6	cell line	sgMsh2	46662078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	94	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T239C:p.F80S,Tph1:NM_001276372:exon3:c.T239C:p.F80S,Tph1:NM_009414:exon3:c.T239C:p.F80S"	7qB3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997135	GAA	nonsynonymous	G	5	GGGGG	NA
M3_p20	chr7	48552267	12A2p6	cell line	sgMsh2	48552267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	242	0	0	NA	exonic	Mrgprb2	synonymous SNV	Mrgprb2:NM_175531:exon2:c.T709C:p.L237L	7qB4	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999972	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	48867125	12A2p6	cell line	sgMsh2	48867125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	168	0	0	NA	exonic	E2f8	synonymous SNV	"E2f8:NM_001013368:exon13:c.T2505C:p.D835D,E2f8:NM_001360812:exon13:c.T2505C:p.D835D"	7qB4	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999981	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	49556971	12A2p6	cell line	sgMsh2	49556971	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	40	0	0	NA	exonic	Nav2	nonsynonymous SNV	"Nav2:NM_175272:exon18:c.T4543G:p.S1515A,Nav2:NM_001111016:exon19:c.T4360G:p.S1454A"	7qB4	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9888524	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	56135305	12A2p6	cell line	sgMsh2	56135305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	586	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon29:c.C4390T:p.L1464F,Herc2:NM_010418:exon29:c.C4390T:p.L1464F"	7qB5	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	56734976	12A2p6	cell line	sgMsh2	56734976	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	139	0	0	NA	exonic	Gabrg3	frameshift deletion	Gabrg3:NM_008074:exon7:c.836delA:p.K279Rfs*9	7qB5	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr7	59275864	12A2p6	cell line	sgMsh2	59275864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	108	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.T389C:p.I130T,Ube3a:NM_011668:exon6:c.T452C:p.I151T"	7qB5	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998894	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	59286057	12A2p6	cell line	sgMsh2	59286057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	96	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon6:c.T1688G:p.M563R,Ube3a:NM_011668:exon8:c.T1751G:p.M584R"	7qB5	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997499	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	62377423	12A2p6	cell line	sgMsh2	62377423	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	30	0	0	NA	exonic	Magel2	nonsynonymous SNV	Magel2:NM_013779:exon1:c.C74T:p.P25L	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9782319	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	63099351	12A2p6	cell line	sgMsh2	63099351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	122	0	0	NA	exonic	Chrna7	nonsynonymous SNV	Chrna7:NM_007390:exon10:c.A1382G:p.K461R	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999573	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	64318302	12A2p6	cell line	sgMsh2	64318302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	191	0	0	NA	exonic	Mtmr10	nonsynonymous SNV	Mtmr10:NM_172742:exon9:c.T878C:p.M293T	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.845760601	1	0.990653	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	65329716	12A2p6	cell line	sgMsh2	65329716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	70	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon9:c.A1060G:p.T354A,Tjp1:NM_009386:exon9:c.A1060G:p.T354A"	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9985363	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	66125637	12A2p6	cell line	sgMsh2	66125637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon2:c.T713C:p.I238T	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999941	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	67733299	12A2p6	cell line	sgMsh2	67733299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	114	0	0	NA	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.T4614C:p.D1538D,Synm:NM_207663:exon5:c.T3708C:p.D1236D"	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999264	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	68304559	12A2p6	cell line	sgMsh2	68304559	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	54	0	0	NA	exonic	Fam169b	nonsynonymous SNV	"Fam169b:NM_001013811:exon3:c.T155C:p.L52P,Fam169b:NM_001374636:exon3:c.T170C:p.L57P"	7qC	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9956677	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	75570003	12A2p6	cell line	sgMsh2	75570003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	339	0	0	NA	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon3:c.T153C:p.S51S	7qD1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr7	76420271	12A2p6	cell line	sgMsh2	76420271	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	191	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon11:c.C1550A:p.A517D	7qD1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	76420375	12A2p6	cell line	sgMsh2	76420375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	77	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon11:c.G1654A:p.G552R	7qD1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990902	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	76425893	12A2p6	cell line	sgMsh2	76425893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	121	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon15:c.T2038C:p.W680R	7qD1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9997689	CTG	nonsynonymous	CCTG	8	CCTGCCTG	NA
M3_p20	chr7	76766421	12A2p6	cell line	sgMsh2	76766421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	74	0	0	NA	exonic	Agbl1	nonsynonymous SNV	Agbl1:NM_001199224:exon21:c.A2945G:p.Y982C	7qD1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.792623809	1	0.8236602	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	233	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	2.35E-08	CAG	synonymous	AGA	8	AGAAGAAG	NA
M3_p20	chr7	79098860	12A2p6	cell line	sgMsh2	79098860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	121	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon12:c.T3378C:p.D1126D,Acan:NM_007424:exon12:c.T3378C:p.D1126D"	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.735058952	2	0.7284072	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr7	79381782	12A2p6	cell line	sgMsh2	79381782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	44	0	0	NA	exonic	Rlbp1	nonsynonymous SNV	"Rlbp1:NM_001173483:exon5:c.T197A:p.L66Q,Rlbp1:NM_001357450:exon5:c.T197A:p.L66Q,Rlbp1:NM_020599:exon5:c.T197A:p.L66Q"	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9914846	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	79693990	12A2p6	cell line	sgMsh2	79693990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	130	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.A3602G:p.D1201G	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999752	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.186	24	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.8750134	GCC	synonymous	NA	NA	NA	NA
M3_p20	chr7	80325665	12A2p6	cell line	sgMsh2	80325665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	102	0	0	NA	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon20:c.A2790G:p.K930K	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9993481	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr7	80391040	12A2p6	cell line	sgMsh2	80391040	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	14	0	0	NA	exonic	Furin	synonymous SNV	"Furin:NM_001081454:exon16:c.G2049A:p.R683R,Furin:NM_011046:exon16:c.G2049A:p.R683R"	7qD2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9378643	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr7	80620550	12A2p6	cell line	sgMsh2	80620550	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	182	0	0	NA	exonic	Crtc3	nonsynonymous SNV	Crtc3:NM_173863:exon4:c.T385G:p.S129A	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9952969	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	80717097	12A2p6	cell line	sgMsh2	80717097	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	195	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon37:c.A4774T:p.I1592F	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	80736380	12A2p6	cell line	sgMsh2	80736380	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	94	0	0	NA	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon24:c.2822delA:p.N941Ifs*7	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M3_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	77	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990902	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.333	85	0	0	NA	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9994717	GCA	synonymous	NA	NA	NA	NA
M3_p20	chr7	83982317	12A2p6	cell line	sgMsh2	83982317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	exonic	Cemip	nonsynonymous SNV	Cemip:NM_030728:exon11:c.A1286G:p.N429S	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999627	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	84856814	12A2p6	cell line	sgMsh2	84856814	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	478	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T450G:p.T150T	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr7	84916353	12A2p6	cell line	sgMsh2	84916353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	492	0	0	NA	exonic	Olfr290	synonymous SNV	Olfr290:NM_146416:exon1:c.T573C:p.S191S	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	270	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.828048337	1	0.9855712	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	85750671	12A2p6	cell line	sgMsh2	85750671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	1096	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.T1154C:p.M385T	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	85958038	12A2p6	cell line	sgMsh2	85958038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	319	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A476G:p.E159G	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.881185129	1	0.9999718	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	85958137	12A2p6	cell line	sgMsh2	85958137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	233	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon2:c.A377G:p.Y126C	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9995797	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86225371	12A2p6	cell line	sgMsh2	86225371	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	211	0	0	NA	exonic	Vmn2r76	stopgain	Vmn2r76:NM_001384930:exon6:c.T2388G:p.Y796X	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9994935	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86321354	12A2p6	cell line	sgMsh2	86321354	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	202	0	0	NA	exonic	Olfr308	synonymous SNV	Olfr308:NM_146621:exon1:c.T597G:p.A199A	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.996825	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	86335714	12A2p6	cell line	sgMsh2	86335714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	377	0	0	NA	exonic	Olfr307	synonymous SNV	Olfr307:NM_146617:exon1:c.T681G:p.P227P	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	459	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr7	86585643	12A2p6	cell line	sgMsh2	86585643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	510	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.G367A:p.A123T	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.391	169	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M3_p20	chr7	86761817	12A2p6	cell line	sgMsh2	86761817	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	154	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon6:c.C716A:p.P239H,Folh1:NM_016770:exon6:c.C716A:p.P239H"	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	0.999985	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	592	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	86915528	12A2p6	cell line	sgMsh2	86915528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	298	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon1:c.T180C:p.S60S	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.27E-09	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr7	86922390	12A2p6	cell line	sgMsh2	86922390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	233	0	0	NA	exonic	Vmn2r78	synonymous SNV	Vmn2r78:NM_001105189:exon4:c.C1407T:p.H469H	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	2.35E-08	ACG	synonymous	NA	NA	NA	NA
M3_p20	chr7	87323934	12A2p6	cell line	sgMsh2	87323934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	88	0	0	NA	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285833:exon11:c.A791G:p.Y264C,Nox4:NM_001285835:exon11:c.A791G:p.Y264C,Nox4:NM_015760:exon11:c.A1013G:p.Y338C"	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	0.9921201	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	87492808	12A2p6	cell line	sgMsh2	87492808	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	218	0	0	NA	exonic	Tyr	stopgain	"Tyr:NM_001317397:exon1:c.C543A:p.Y181X,Tyr:NM_011661:exon1:c.C543A:p.Y181X"	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9999998	AGT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	88116222	12A2p6	cell line	sgMsh2	88116222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	140	0	0	NA	exonic	Grm5	nonsynonymous SNV	Grm5:NM_001143834:exon10:c.A2657G:p.K886R	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.74834315	2	0.6860442	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	90160587	12A2p6	cell line	sgMsh2	90160587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	169	0	0	NA	exonic	Picalm	synonymous SNV	"Picalm:NM_001252520:exon2:c.T270C:p.N90N,Picalm:NM_001252521:exon2:c.T270C:p.N90N,Picalm:NM_001252522:exon2:c.T270C:p.N90N,Picalm:NM_001252523:exon2:c.T270C:p.N90N,Picalm:NM_001252524:exon2:c.T270C:p.N90N,Picalm:NM_001360867:exon2:c.T270C:p.N90N,Picalm:NM_146194:exon2:c.T270C:p.N90N"	7qD3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9963561	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr7	97223703	12A2p6	cell line	sgMsh2	97223703	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	128	0	0	NA	exonic	Gab2	nonsynonymous SNV	"Gab2:NM_001162477:exon2:c.G312T:p.E104D,Gab2:NM_010248:exon2:c.G312T:p.E104D"	7qE1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.890041261	1	0.9964903	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	97662217	12A2p6	cell line	sgMsh2	97662217	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	56	0	0	NA	exonic	Rsf1	nonsynonymous SNV	Rsf1:NM_001081267:exon6:c.A2153T:p.N718I	7qE1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	0.9962165	AAC	nonsynonymous	GAAA	8	GAAAGAAA	NA
M3_p20	chr7	98352506	12A2p6	cell line	sgMsh2	98352506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	83	0	0	NA	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.T617C:p.L206P,Tsku:NM_001168539:exon2:c.T617C:p.L206P,Tsku:NM_001168540:exon3:c.T617C:p.L206P,Tsku:NM_001168541:exon4:c.T617C:p.L206P"	7qE1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9993948	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	98645172	12A2p6	cell line	sgMsh2	98645172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	91	0	0	NA	exonic	Emsy	synonymous SNV	"Emsy:NM_001381869:exon5:c.T282C:p.S94S,Emsy:NM_172280:exon5:c.T282C:p.S94S"	7qE1	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr7	100649991	12A2p6	cell line	sgMsh2	100649991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	120	0	0	NA	exonic	Plekhb1	synonymous SNV	"Plekhb1:NM_001163186:exon5:c.T375C:p.V125V,Plekhb1:NM_001163183:exon6:c.T375C:p.V125V,Plekhb1:NM_013746:exon7:c.T432C:p.V144V"	7qE2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999511	AAA	synonymous	NA	NA	NA	NA
M3_p20	chr7	101580262	12A2p6	cell line	sgMsh2	101580262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	152	0	0	NA	exonic	Art2b	synonymous SNV	Art2b:NM_019915:exon2:c.A429G:p.L143L	7qE2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999944	CTA	synonymous	TAAAC	12	TAAACTAAACTA	NA
M3_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	154	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.717346688	2	0.9353122	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	164	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.730630886	2	0.09856922	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	182	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9972867	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	102709503	12A2p6	cell line	sgMsh2	102709503	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	414	0	0	NA	exonic	Olfr558	frameshift deletion	Olfr558:NM_147093:exon2:c.243delA:p.M83fs*0	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr7	102877647	12A2p6	cell line	sgMsh2	102877647	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.251	496	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T526G:p.S176A	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	102877650	12A2p6	cell line	sgMsh2	102877650	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.248	499	0	0	NA	exonic	Olfr568	nonsynonymous SNV	Olfr568:NM_147091:exon1:c.T529C:p.Y177H	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	103155345	12A2p6	cell line	sgMsh2	103155345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	227	0	0	NA	exonic	Olfr589	nonsynonymous SNV	Olfr589:NM_147052:exon1:c.A401G:p.Y134C	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	2	1	1	3.49E-08	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	103320651	12A2p6	cell line	sgMsh2	103320651	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	364	0	0	NA	exonic	Olfr597	frameshift deletion	Olfr597:NM_001011845:exon1:c.239delC:p.M83Cfs*17	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M3_p20	chr7	103418304	12A2p6	cell line	sgMsh2	103418304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	618	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.A805G:p.S269G	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	103470347	12A2p6	cell line	sgMsh2	103470347	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	402	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T307A:p.Y103N	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	103470351	12A2p6	cell line	sgMsh2	103470351	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	401	0	0	NA	exonic	Olfr608	nonsynonymous SNV	Olfr608:NM_146756:exon1:c.T311G:p.F104C	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	103506420	12A2p6	cell line	sgMsh2	103506420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.31	248	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T525C:p.A175A	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	9.12E-09	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr7	103561109	12A2p6	cell line	sgMsh2	103561109	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	326	0	0	NA	exonic	Olfr615	nonsynonymous SNV	Olfr615:NM_147080:exon1:c.G631A:p.D211N	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	1.04E-09	GGA	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr7	103716707	12A2p6	cell line	sgMsh2	103716707	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	488	0	0	NA	exonic	Olfr243	nonsynonymous SNV	Olfr243:NM_001025386:exon1:c.A112C:p.I38L	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	0.68192216	2	1.33E-08	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104084873	12A2p6	cell line	sgMsh2	104084873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	227	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.C206T:p.S69F	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	3.49E-08	AGA	nonsynonymous	ACAG	8	ACAGACAG	NA
M3_p20	chr7	104128876	12A2p6	cell line	sgMsh2	104128876	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	102	0	0	NA	exonic	Ubqln5	nonsynonymous SNV	Ubqln5:NM_027634:exon1:c.G740A:p.G247D	7qE3	chr7-9991672-104249879	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998337	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104329644	12A2p6	cell line	sgMsh2	104329644	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	116	0	0	NA	exonic	Trim34b	nonsynonymous SNV	Trim34b:NM_001243916:exon1:c.C97A:p.L33I	7qE3	chr7-104259115-104329817	2	NA	NA	0.91	4.029540036	NA	NA	1	1	0.9999358	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104472252	12A2p6	cell line	sgMsh2	104472252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	428	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon7:c.A835G:p.S279G,Trim30d:NM_199146:exon8:c.A1285G:p.S429G"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	217	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104579774	12A2p6	cell line	sgMsh2	104579774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	486	0	0	NA	exonic	Olfr653	nonsynonymous SNV	Olfr653:NM_147074:exon1:c.C127A:p.L43I	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	434	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TCC	synonymous	NA	NA	NA	NA
M3_p20	chr7	104859419	12A2p6	cell line	sgMsh2	104859419	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	544	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon2:c.A27C:p.E9D	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	105143658	12A2p6	cell line	sgMsh2	105143658	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	148	0	0	NA	exonic	Olfr683	nonsynonymous SNV	Olfr683:NM_147045:exon1:c.G652A:p.D218N	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.9998375	TCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	105368670	12A2p6	cell line	sgMsh2	105368670	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	248	0	0	NA	exonic	Olfr692	nonsynonymous SNV	Olfr692:NM_146355:exon1:c.A343C:p.M115L	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	0.9999995	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	108	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3_p20	chr7	105619140	12A2p6	cell line	sgMsh2	105619140	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	63	0	0	NA	exonic	Trim3	nonsynonymous SNV	"Trim3:NM_001285870:exon4:c.A434C:p.E145A,Trim3:NM_001285871:exon4:c.A434C:p.E145A,Trim3:NM_001285873:exon4:c.A434C:p.E145A,Trim3:NM_001360425:exon4:c.A452C:p.E151A,Trim3:NM_018880:exon4:c.A434C:p.E145A"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.783767677	1	0.7995596	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	106602355	12A2p6	cell line	sgMsh2	106602355	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.18	138	0	0	NA	exonic	Gm1966	nonsynonymous SNV	"Gm1966:NM_001277179:exon3:c.T1681C:p.Y561H,Gm1966:NM_001277180:exon3:c.T1681C:p.Y561H,Gm1966:NM_001277181:exon4:c.T1681C:p.Y561H,Gm1966:NM_001277182:exon4:c.T1681C:p.Y561H,Gm1966:NM_001277183:exon6:c.T1681C:p.Y561H"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.797051875	1	0.8259116	TAA	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr7	106753224	12A2p6	cell line	sgMsh2	106753224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	374	0	0	NA	exonic	Olfr698	nonsynonymous SNV	Olfr698:NM_146602:exon1:c.C163T:p.L55F	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	106886521	12A2p6	cell line	sgMsh2	106886521	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	309	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.C295A:p.L99I	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.13E-09	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	106944593	12A2p6	cell line	sgMsh2	106944593	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	319	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T407A:p.M136K	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.06E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	267	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	3.23E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107147393	12A2p6	cell line	sgMsh2	107147393	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	161	0	0	NA	exonic	Olfr716	nonsynonymous SNV	Olfr716:NM_146604:exon1:c.C76A:p.L26I	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.999997	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107744242	12A2p6	cell line	sgMsh2	107744242	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	79	0	0	NA	exonic	Ppfibp2	nonsynonymous SNV	"Ppfibp2:NM_001357438:exon21:c.T2037G:p.D679E,Ppfibp2:NM_001357437:exon22:c.T2256G:p.D752E,Ppfibp2:NM_001357436:exon23:c.T2289G:p.D763E,Ppfibp2:NM_001163557:exon24:c.T2487G:p.D829E,Ppfibp2:NM_008905:exon25:c.T2520G:p.D840E"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	2	1	1	0.9992058	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107845192	12A2p6	cell line	sgMsh2	107845192	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	341	0	0	NA	exonic	Olfr470	stopgain	Olfr470:NM_146425:exon1:c.T540A:p.Y180X	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107933840	12A2p6	cell line	sgMsh2	107933840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	546	0	0	NA	exonic	Olfr473	nonsynonymous SNV	Olfr473:NM_146775:exon1:c.T319G:p.F107V	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	107990375	12A2p6	cell line	sgMsh2	107990375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	133	0	0	NA	exonic	Olfr477	synonymous SNV	Olfr477:NM_146926:exon1:c.T9C:p.A3A	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.938749986	1	0.999671	CTC	synonymous	NA	NA	NA	NA
M3_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	314	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.09E-09	ATG	nonsynonymous	G	5	GGGGG	NA
M3_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	188	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	108159767	12A2p6	cell line	sgMsh2	108159767	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	654	0	0	NA	exonic	Olfr485	synonymous SNV	Olfr485:NM_001011810:exon1:c.C105T:p.S35S	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1	TGC	synonymous	NA	NA	NA	NA
M3_p20	chr7	108159777	12A2p6	cell line	sgMsh2	108159777	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	637	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T95C:p.I32T	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	108544593	12A2p6	cell line	sgMsh2	108544593	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	212	0	0	NA	exonic	Olfr503	nonsynonymous SNV	Olfr503:NM_001011527:exon1:c.G67T:p.G23C	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	108564891	12A2p6	cell line	sgMsh2	108564891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	499	0	0	NA	exonic	Olfr504	synonymous SNV	Olfr504:NM_001011858:exon1:c.A903G:p.R301R	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1	GTC	synonymous	NA	NA	NA	NA
M3_p20	chr7	108622747	12A2p6	cell line	sgMsh2	108622747	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	167	0	0	NA	exonic	Olfr507	frameshift deletion	Olfr507:NM_146743:exon1:c.934delA:p.T314Hfs*3	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.261	442	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	108845941	12A2p6	cell line	sgMsh2	108845941	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	233	0	0	NA	exonic	Olfr516	nonsynonymous SNV	Olfr516:NM_146725:exon1:c.T68G:p.L23R	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	2.35E-08	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	109477730	12A2p6	cell line	sgMsh2	109477730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	79	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon8:c.T1001C:p.L334P,Trim66:NM_001170913:exon8:c.T695C:p.L232P,Trim66:NM_181853:exon8:c.T695C:p.L232P"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9992058	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	109483656	12A2p6	cell line	sgMsh2	109483656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	61	0	0	NA	exonic	Trim66	nonsynonymous SNV	"Trim66:NM_001170912:exon4:c.T578C:p.V193A,Trim66:NM_001170913:exon4:c.T272C:p.V91A,Trim66:NM_181853:exon4:c.T272C:p.V91A"	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.797051875	1	0.8420028	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	110130973	12A2p6	cell line	sgMsh2	110130973	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	260	0	0	NA	exonic	Wee1	nonsynonymous SNV	Wee1:NM_009516:exon6:c.C1283A:p.P428H	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	4.59E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	110265927	12A2p6	cell line	sgMsh2	110265927	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	exonic	Swap70	nonsynonymous SNV	Swap70:NM_009302:exon5:c.A734C:p.E245A	7qE3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.95646225	1	0.9999982	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	112894458	12A2p6	cell line	sgMsh2	112894458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	150	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.A1161G:p.I387M,Tead1:NM_009346:exon12:c.A1173G:p.I391M,Tead1:NM_001166584:exon13:c.A1236G:p.I412M"	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	0.9999809	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	542	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.903325459	1	2.05E-09	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	114219660	12A2p6	cell line	sgMsh2	114219660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	145	0	0	NA	exonic	Copb1	nonsynonymous SNV	Copb1:NM_033370:exon19:c.T2422C:p.S808P	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999911	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	115477063	12A2p6	cell line	sgMsh2	115477063	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	150	0	0	NA	exonic	Sox6	nonsynonymous SNV	"Sox6:NM_001277328:exon14:c.G2216A:p.G739D,Sox6:NM_001277327:exon15:c.G2219A:p.G740D,Sox6:NM_001025559:exon16:c.G2219A:p.G740D,Sox6:NM_001025560:exon16:c.G2213A:p.G738D,Sox6:NM_001277326:exon16:c.G2339A:p.G780D,Sox6:NM_011445:exon17:c.G2339A:p.G780D"	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999936	ACC	nonsynonymous	CATAC	10	CATACCATAC	NA
M3_p20	chr7	116158057	12A2p6	cell line	sgMsh2	116158057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	36	0	0	NA	exonic	Plekha7	nonsynonymous SNV	"Plekha7:NM_001305186:exon9:c.A1519G:p.S507G,Plekha7:NM_001305189:exon9:c.A1342G:p.S448G,Plekha7:NM_001305190:exon9:c.A1471G:p.S491G,Plekha7:NM_172743:exon9:c.A949G:p.S317G,Plekha7:NM_001305185:exon11:c.A1657G:p.S553G"	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9854186	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	117549082	12A2p6	cell line	sgMsh2	117549082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	119	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon3:c.T880C:p.F294L	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999476	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	118490892	12A2p6	cell line	sgMsh2	118490892	A	T	SNV	Mutect2;Strelka2	2	0.211	50	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.T443A:p.L148Q	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9827167	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	118543426	12A2p6	cell line	sgMsh2	118543426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	189	0	0	NA	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon13:c.A1738G:p.S580G	7qF1	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.712918622	2	0.9814083	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	119449012	12A2p6	cell line	sgMsh2	119449012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	226	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon8:c.A1373G:p.Y458C	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	3.72E-08	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	119489529	12A2p6	cell line	sgMsh2	119489529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	188	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.A1248G:p.K416K	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999995	ATT	synonymous	NA	NA	NA	NA
M3_p20	chr7	119530459	12A2p6	cell line	sgMsh2	119530459	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	207	0	0	NA	exonic	Acsm5	nonsynonymous SNV	Acsm5:NM_178758:exon3:c.C393A:p.S131R	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.495943389	2	0.99961	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	240	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.9994951	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	121500719	12A2p6	cell line	sgMsh2	121500719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	119	0	0	NA	exonic	Hs3st2	nonsynonymous SNV	Hs3st2:NM_001081327:exon2:c.T787C:p.Y263H	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.814764139	1	0.9094987	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	121935740	12A2p6	cell line	sgMsh2	121935740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	98	0	0	NA	exonic	Cog7	nonsynonymous SNV	Cog7:NM_001033318:exon13:c.T1721C:p.L574P	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997817	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	121971366	12A2p6	cell line	sgMsh2	121971366	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	112	0	0	NA	exonic	Cog7	frameshift deletion	Cog7:NM_001033318:exon4:c.518delA:p.K173Sfs*7	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.903325459	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr7	122071974	12A2p6	cell line	sgMsh2	122071974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	104	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon5:c.C872T:p.T291I	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.854616733	1	0.9748822	ACC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	122076189	12A2p6	cell line	sgMsh2	122076189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	148	0	0	NA	exonic	Ubfd1	nonsynonymous SNV	Ubfd1:NM_138589:exon6:c.T995C:p.M332T	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.9999662	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	122176547	12A2p6	cell line	sgMsh2	122176547	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	247	0	0	NA	exonic	Ern2	synonymous SNV	"Ern2:NM_001316689:exon12:c.C1323A:p.A441A,Ern2:NM_012016:exon12:c.C1323A:p.A441A"	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	9.69E-09	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr7	122181574	12A2p6	cell line	sgMsh2	122181574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	229	0	0	NA	exonic	Ern2	nonsynonymous SNV	"Ern2:NM_001316689:exon5:c.G353T:p.S118I,Ern2:NM_012016:exon5:c.G353T:p.S118I"	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	3.05E-08	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	122671909	12A2p6	cell line	sgMsh2	122671909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	198	0	0	NA	exonic	Cacng3	nonsynonymous SNV	Cacng3:NM_019430:exon1:c.A136G:p.S46G	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9999992	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	122999884	12A2p6	cell line	sgMsh2	122999884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	49	0	0	NA	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon17:c.A3417G:p.L1139L	7qF2	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9939241	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr7	123494884	12A2p6	cell line	sgMsh2	123494884	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	103	0	0	NA	exonic	Zkscan2	frameshift deletion	Zkscan2:NM_001081329:exon4:c.706delA:p.S236Vfs*35	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr7	126547831	12A2p6	cell line	sgMsh2	126547831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	115	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon17:c.T2268G:p.N756K	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999313	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	126552054	12A2p6	cell line	sgMsh2	126552054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	70	0	0	NA	exonic	Eif3c	synonymous SNV	Eif3c:NM_146200:exon16:c.T2097C:p.H699H	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9985363	CAT	synonymous	NA	NA	NA	NA
M3_p20	chr7	126586228	12A2p6	cell line	sgMsh2	126586228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	101	0	0	NA	exonic	Apobr	nonsynonymous SNV	Apobr:NM_138310:exon2:c.A910G:p.T304A	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	126587412	12A2p6	cell line	sgMsh2	126587412	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	118	0	0	NA	exonic	Apobr	synonymous SNV	Apobr:NM_138310:exon2:c.C2094T:p.G698G	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.999944	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr7	126797375	12A2p6	cell line	sgMsh2	126797375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	130	0	0	NA	exonic	Aldoa	stopgain	"Aldoa:NM_001177308:exon3:c.C286T:p.Q96X,Aldoa:NM_007438:exon3:c.C286T:p.Q96X,Aldoa:NM_001177307:exon4:c.C448T:p.Q150X"	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.991886778	1	0.9999644	TGG	nonsynonymous	G	5	GGGGG	NA
M3_p20	chr7	126998574	12A2p6	cell line	sgMsh2	126998574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	142	0	0	NA	exonic	Mvp	nonsynonymous SNV	Mvp:NM_080638:exon4:c.T371C:p.V124A	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.739487018	2	0.7770914	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127051630	12A2p6	cell line	sgMsh2	127051630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	311	0	0	NA	exonic	Zg16	nonsynonymous SNV	Zg16:NM_026918:exon3:c.T185C:p.V62A	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127519582	12A2p6	cell line	sgMsh2	127519582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	266	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon4:c.T56C:p.M19T	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	8.48E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127560756	12A2p6	cell line	sgMsh2	127560756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	112	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.A9803G:p.K3268R	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999157	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127583520	12A2p6	cell line	sgMsh2	127583520	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	43	0	0	NA	exonic	Ccdc189	nonsynonymous SNV	"Ccdc189:NM_001382406:exon8:c.T776C:p.L259P,Ccdc189:NM_001033040:exon9:c.T893C:p.L298P"	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.991886778	1	0.9897465	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	72	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.495943389	2	0.9734136	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127867162	12A2p6	cell line	sgMsh2	127867162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	87	0	0	NA	exonic	Zfp668	synonymous SNV	"Zfp668:NM_001362190:exon3:c.A849G:p.P283P,Zfp668:NM_001362191:exon3:c.A849G:p.P283P,Zfp668:NM_146259:exon3:c.A849G:p.P283P,Zfp668:NM_001362189:exon4:c.A849G:p.P283P,Zfp668:NM_001362192:exon5:c.A849G:p.P283P"	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995388	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr7	127878688	12A2p6	cell line	sgMsh2	127878688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.C36T:p.D12D	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998733	ACT	synonymous	NA	NA	NA	NA
M3_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	242	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999972	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	127944913	12A2p6	cell line	sgMsh2	127944913	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	24	0	0	NA	exonic	Prss36	synonymous SNV	Prss36:NM_001319147:exon5:c.C285A:p.T95T	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9676163	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr7	128086037	12A2p6	cell line	sgMsh2	128086037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	231	0	0	NA	exonic	Itgam	nonsynonymous SNV	"Itgam:NM_001082960:exon12:c.A1321G:p.T441A,Itgam:NM_008401:exon12:c.A1321G:p.T441A"	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	2.68E-08	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	128185792	12A2p6	cell line	sgMsh2	128185792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	55	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon9:c.T976C:p.Y326H	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9959514	CTA	nonsynonymous	GCTAT	10	GCTATGCTAT	NA
M3_p20	chr7	128237187	12A2p6	cell line	sgMsh2	128237187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	141	0	0	NA	exonic	9130023H24Rik	nonsynonymous SNV	9130023H24Rik:NM_177001:exon1:c.A233G:p.K78R	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.9996536	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	128682320	12A2p6	cell line	sgMsh2	128682320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	396	0	0	NA	exonic	Inpp5f	nonsynonymous SNV	Inpp5f:NM_178641:exon14:c.T1642C:p.Y548H	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	135152261	12A2p6	cell line	sgMsh2	135152261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	117	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon47:c.C4766T:p.A1589V	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	2	1	1	0.99994	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	135411969	12A2p6	cell line	sgMsh2	135411969	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	0	0	NA	exonic	Foxi2	nonsynonymous SNV	Foxi2:NM_183193:exon2:c.G873T:p.Q291H	7qF3	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9908908	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	138209801	12A2p6	cell line	sgMsh2	138209801	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	161	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon12:c.T1663A:p.F555I	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.999997	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	139661032	12A2p6	cell line	sgMsh2	139661032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	120	0	0	NA	exonic	Cfap46	synonymous SNV	Cfap46:NM_001302546:exon12:c.T1420C:p.L474L	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.9907882	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr7	139986776	12A2p6	cell line	sgMsh2	139986776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	201	0	0	NA	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon15:c.T1579A:p.F527I,Adam8:NM_007403:exon15:c.T1582A:p.F528I"	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	140336044	12A2p6	cell line	sgMsh2	140336044	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	484	0	0	NA	exonic	Olfr527	nonsynonymous SNV	Olfr527:NM_001011776:exon1:c.C181A:p.L61M	7qF4	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	141162882	12A2p6	cell line	sgMsh2	141162882	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.166	56	0	0	NA	exonic	Rnh1	nonsynonymous SNV	"Rnh1:NM_001172100:exon7:c.T911C:p.L304S,Rnh1:NM_001172101:exon7:c.T1019C:p.L340S,Rnh1:NM_145135:exon7:c.T911C:p.L304S"	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.735058952	1	0.6205072	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	141278716	12A2p6	cell line	sgMsh2	141278716	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	58	0	0	NA	exonic;splicing	Sct;Sct	nonsynonymous SNV	"Sct:NM_001287171:exon3:c.G192T:p.Q64H,Sct:NM_011328:exon3:c.G192T:p.Q64H"	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.987458712	1	0.9957653	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	141466167	12A2p6	cell line	sgMsh2	141466167	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	70	0	0	NA	exonic	Cracr2b	nonsynonymous SNV	Cracr2b:NM_001025103:exon10:c.T1129G:p.C377G	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.960890316	1	0.9962702	CTG	nonsynonymous	CTG	15	CTGCTGCTGCTGCTG	NA
M3_p20	chr7	141857990	12A2p6	cell line	sgMsh2	141857990	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.257	459	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.C4672A:p.P1558T	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	144410734	12A2p6	cell line	sgMsh2	144410734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	83	0	0	NA	exonic	Shank2	nonsynonymous SNV	"Shank2:NM_001081370:exon10:c.A2078G:p.Y693C,Shank2:NM_001113373:exon15:c.A2708G:p.Y903C"	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.9714789	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr7	145321506	12A2p6	cell line	sgMsh2	145321506	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.236	152	0	0	NA	exonic	Mrgprd	frameshift insertion	Mrgprd:NM_203490:exon2:c.114dupG:p.M41Dfs*31	7qF5	chr7-104329818-145323643	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GTG	frameshift	G	5	GGGGG	1
M3_p20	chr8	3851259	12A2p6	cell line	sgMsh2	3851259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	238	0	0	NA	exonic	Cd209e	nonsynonymous SNV	Cd209e:NM_130905:exon5:c.A394G:p.S132G	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.70E-08	CTA	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr8	4250582	12A2p6	cell line	sgMsh2	4250582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	39	0	0	NA	exonic	Tgfbr3l	synonymous SNV	Tgfbr3l:NM_001195258:exon5:c.T759C:p.G253G	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9880774	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr8	4516958	12A2p6	cell line	sgMsh2	4516958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	94	0	0	NA	exonic	Cers4	nonsynonymous SNV	Cers4:NM_026058:exon3:c.T259C:p.Y87H	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997135	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	5105121	12A2p6	cell line	sgMsh2	5105121	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.229	336	0	0	NA	exonic	Slc10a2	synonymous SNV	Slc10a2:NM_011388:exon1:c.A63G:p.V21V	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.02E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	655	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M3_p20	chr8	9207773	12A2p6	cell line	sgMsh2	9207773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	31	0	0	NA	exonic	Fam155a	synonymous SNV	Fam155a:NM_173446:exon3:c.G1374A:p.T458T	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9796339	GCG	synonymous	NA	NA	NA	NA
M3_p20	chr8	9972537	12A2p6	cell line	sgMsh2	9972537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	288	0	0	NA	exonic	Lig4	synonymous SNV	"Lig4:NM_001377042:exon2:c.A1242G:p.V414V,Lig4:NM_176953:exon2:c.A1242G:p.V414V"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.53E-09	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr8	10554634	12A2p6	cell line	sgMsh2	10554634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	111	0	0	NA	exonic	Myo16	nonsynonymous SNV	Myo16:NM_001319151:exon29:c.T3413G:p.L1138R	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9811927	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	11518463	12A2p6	cell line	sgMsh2	11518463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	exonic	Cars2	nonsynonymous SNV	"Cars2:NM_001359137:exon11:c.C1091T:p.A364V,Cars2:NM_024248:exon11:c.C1094T:p.A365V"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9984335	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	11633005	12A2p6	cell line	sgMsh2	11633005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	105	0	0	NA	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon2:c.T221C:p.M74T,Ankrd10:NM_133971:exon2:c.T221C:p.M74T"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9991079	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	12812332	12A2p6	cell line	sgMsh2	12812332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	434	0	0	NA	exonic	Atp11a	nonsynonymous SNV	"Atp11a:NM_001293667:exon3:c.A183G:p.I61M,Atp11a:NM_001293668:exon3:c.A183G:p.I61M,Atp11a:NM_015804:exon3:c.A183G:p.I61M"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.863472865	1	0.999983	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	91	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996486	TCG	synonymous	NA	NA	NA	NA
M3_p20	chr8	13454216	12A2p6	cell line	sgMsh2	13454216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	231	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon4:c.A344G:p.Y115C,Tmem255b:NM_001143671:exon5:c.A407G:p.Y136C"	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9991087	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	15028813	12A2p6	cell line	sgMsh2	15028813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	39	0	0	NA	exonic	Kbtbd11	nonsynonymous SNV	Kbtbd11:NM_029116:exon2:c.T1411C:p.S471P	8qA1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9880774	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	15945033	12A2p6	cell line	sgMsh2	15945033	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	251	0	0	NA	exonic	Csmd1	synonymous SNV	Csmd1:NM_053171:exon52:c.C8001A:p.L2667L	8qA1.2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	7.62E-09	AGA	synonymous	NA	NA	NA	NA
M3_p20	chr8	18632154	12A2p6	cell line	sgMsh2	18632154	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	87	0	0	NA	exonic	Mcph1	nonsynonymous SNV	Mcph1:NM_173189:exon8:c.G1306T:p.G436C	8qA1.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.9907028	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	19195133	12A2p6	cell line	sgMsh2	19195133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	65	0	0	NA	exonic	Defb14	nonsynonymous SNV	Defb14:NM_183026:exon2:c.T125C:p.V42A	8qA1.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.992756	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9990622	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	22775632	12A2p6	cell line	sgMsh2	22775632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	155	0	0	NA	exonic	Plat	synonymous SNV	Plat:NM_008872:exon8:c.C690A:p.S230S	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999955	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr8	22782006	12A2p6	cell line	sgMsh2	22782006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	168	0	0	NA	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon14:c.T1580C:p.I527T	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999981	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	23119085	12A2p6	cell line	sgMsh2	23119085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	135	0	0	NA	exonic	Ank1	synonymous SNV	"Ank1:NM_001277280:exon32:c.T3981C:p.F1327F,Ank1:NM_001277281:exon32:c.T3870C:p.F1290F,Ank1:NM_001277284:exon32:c.T3870C:p.F1290F,Ank1:NM_001110783:exon33:c.T4005C:p.F1335F,Ank1:NM_001277286:exon33:c.T3918C:p.F1306F,Ank1:NM_001277289:exon33:c.T3918C:p.F1306F,Ank1:NM_031158:exon33:c.T3918C:p.F1306F"	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999824	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr8	24646316	12A2p6	cell line	sgMsh2	24646316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	625	0	0	NA	exonic	Adam18	synonymous SNV	Adam18:NM_010084:exon12:c.A1188G:p.E396E	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr8	24996778	12A2p6	cell line	sgMsh2	24996778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	183	0	0	NA	exonic	Adam9	nonsynonymous SNV	"Adam9:NM_001270996:exon6:c.A483G:p.I161M,Adam9:NM_007404:exon6:c.A483G:p.I161M"	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999993	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	25593815	12A2p6	cell line	sgMsh2	25593815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	134	0	0	NA	exonic	Letm2	synonymous SNV	"Letm2:NM_001364069:exon3:c.A399G:p.K133K,Letm2:NM_173012:exon3:c.A399G:p.K133K"	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.752771216	2	0.6152193	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr8	25954655	12A2p6	cell line	sgMsh2	25954655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	98	0	0	NA	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon12:c.A1264C:p.S422R	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997817	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	27115250	12A2p6	cell line	sgMsh2	27115250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	98	0	0	NA	exonic	Adgra2	nonsynonymous SNV	Adgra2:NM_054044:exon12:c.T1622C:p.V541A	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.810336073	1	0.8872764	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	63	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.633213434	2	0.8656703	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	27394299	12A2p6	cell line	sgMsh2	27394299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	67	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon4:c.A1018G:p.M340V,Chrnb3:NM_173212:exon5:c.A1063G:p.M355V"	8qA2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9982057	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	33255595	12A2p6	cell line	sgMsh2	33255595	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	137	0	0	NA	exonic	Wrn	frameshift deletion	"Wrn:NM_001122822:exon30:c.3485delA:p.N1162Tfs*1,Wrn:NM_011721:exon30:c.3485delA:p.N1162Tfs*1"	8qA3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M3_p20	chr8	33292568	12A2p6	cell line	sgMsh2	33292568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	315	0	0	NA	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon19:c.A2333G:p.D778G,Wrn:NM_011721:exon19:c.A2333G:p.D778G"	8qA3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.09E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	33776515	12A2p6	cell line	sgMsh2	33776515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	153	0	0	NA	exonic	Gtf2e2	nonsynonymous SNV	"Gtf2e2:NM_001167921:exon8:c.T825G:p.N275K,Gtf2e2:NM_001167922:exon8:c.T825G:p.N275K,Gtf2e2:NM_026584:exon8:c.T825G:p.N275K"	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999948	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	34873091	12A2p6	cell line	sgMsh2	34873091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	267	0	0	NA	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon8:c.A1372G:p.N458D	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.925465789	1	0.999998	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	40536881	12A2p6	cell line	sgMsh2	40536881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	99	0	0	NA	exonic	Vps37a	nonsynonymous SNV	Vps37a:NM_033560:exon5:c.A428G:p.N143S	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	40908522	12A2p6	cell line	sgMsh2	40908522	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	230	0	0	NA	exonic	Slc7a2	nonsynonymous SNV	Slc7a2:NM_007514:exon7:c.G1180T:p.G394W	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.850188667	1	0.9963299	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	43141374	12A2p6	cell line	sgMsh2	43141374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	253	0	0	NA	exonic	Triml1	nonsynonymous SNV	Triml1:NM_177742:exon1:c.A19G:p.M7V	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	6.78E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	723	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	44951776	12A2p6	cell line	sgMsh2	44951776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	424	0	0	NA	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon1:c.T1563C:p.S521S	8qB1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr8	46556178	12A2p6	cell line	sgMsh2	46556178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	171	0	0	NA	exonic	Cenpu	nonsynonymous SNV	"Cenpu:NM_001368403:exon3:c.A187G:p.T63A,Cenpu:NM_027973:exon3:c.A187G:p.T63A"	8qB1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.730630886	2	0.9155249	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	114	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M3_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	124	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999627	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	219	0	0	NA	exonic;splicing	Aga;Aga	nonsynonymous SNV	Aga:NM_001005847:exon7:c.G706T:p.G236W	8qB1.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	54639969	12A2p6	cell line	sgMsh2	54639969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	59	0	0	NA	exonic	Wdr17	synonymous SNV	"Wdr17:NM_001372376:exon20:c.A2049G:p.L683L,Wdr17:NM_001372374:exon21:c.A2598G:p.L866L,Wdr17:NM_001372375:exon22:c.A2337G:p.L779L,Wdr17:NM_001364215:exon23:c.A2889G:p.L963L,Wdr17:NM_001372373:exon24:c.A3111G:p.L1037L,Wdr17:NM_001172152:exon25:c.A3132G:p.L1044L,Wdr17:NM_001372370:exon25:c.A3183G:p.L1061L,Wdr17:NM_001372371:exon25:c.A3183G:p.L1061L,Wdr17:NM_001372372:exon25:c.A3183G:p.L1061L,Wdr17:NM_028220:exon26:c.A3153G:p.L1051L"	8qB1.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	0.9937969	GTA	synonymous	G	5	GGGGG	NA
M3_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	43	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9908908	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	65014576	12A2p6	cell line	sgMsh2	65014576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	139	0	0	NA	exonic	Trim61	nonsynonymous SNV	"Trim61:NM_001177551:exon2:c.A32G:p.Q11R,Trim61:NM_153110:exon3:c.A32G:p.Q11R"	8qB3.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999866	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	66418914	12A2p6	cell line	sgMsh2	66418914	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	159	0	0	NA	exonic	Marchf1	nonsynonymous SNV	"Marchf1:NM_001166375:exon2:c.G311T:p.W104L,Marchf1:NM_001166372:exon6:c.G341T:p.W114L,Marchf1:NM_001363123:exon6:c.G329T:p.W110L,Marchf1:NM_001363125:exon6:c.G329T:p.W110L,Marchf1:NM_175188:exon6:c.G329T:p.W110L,Marchf1:NM_001293784:exon7:c.G341T:p.W114L,Marchf1:NM_001363124:exon7:c.G341T:p.W114L"	8qB3.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999966	TGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	66511988	12A2p6	cell line	sgMsh2	66511988	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	149	0	0	NA	exonic	Tktl2	nonsynonymous SNV	"Tktl2:NM_001271574:exon1:c.A197C:p.E66A,Tktl2:NM_028927:exon1:c.A197C:p.E66A"	8qB3.1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999932	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	69815491	12A2p6	cell line	sgMsh2	69815491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	50	0	0	NA	exonic	Gmip	nonsynonymous SNV	Gmip:NM_198101:exon12:c.G1194T:p.E398D	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9943212	AGG	nonsynonymous	GGA	11	GGAGGAGGAGG	NA
M3_p20	chr8	70135080	12A2p6	cell line	sgMsh2	70135080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	247	0	0	NA	exonic	Rfxank	synonymous SNV	"Rfxank:NM_001025589:exon6:c.T520C:p.L174L,Rfxank:NM_011266:exon6:c.T550C:p.L184L"	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	9.69E-09	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr8	70174385	12A2p6	cell line	sgMsh2	70174385	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	127	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	Tmem161a:NM_145597:exon2:c.G86A:p.R29H	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999696	CGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
M3_p20	chr8	70251633	12A2p6	cell line	sgMsh2	70251633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	102	0	0	NA	exonic	Sugp2	nonsynonymous SNV	"Sugp2:NM_001168290:exon5:c.A1819G:p.S607G,Sugp2:NM_172755:exon5:c.A1819G:p.S607G"	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998337	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	70386210	12A2p6	cell line	sgMsh2	70386210	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	105	0	0	NA	exonic	Crtc1	synonymous SNV	Crtc1:NM_001004062:exon14:c.C1807T:p.L603L	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998644	AGG	synonymous	NA	NA	NA	NA
M3_p20	chr8	70485126	12A2p6	cell line	sgMsh2	70485126	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	309	0	0	NA	exonic	Tmem59l	nonsynonymous SNV	"Tmem59l:NM_001368367:exon4:c.G450T:p.E150D,Tmem59l:NM_001368366:exon5:c.G603T:p.E201D,Tmem59l:NM_182991:exon5:c.G603T:p.E201D"	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9999768	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	71684012	12A2p6	cell line	sgMsh2	71684012	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	169	0	0	NA	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M3_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	109	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9947149	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M3_p20	chr8	72146506	12A2p6	cell line	sgMsh2	72146506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	401	0	0	NA	exonic	Tpm4	synonymous SNV	Tpm4:NM_001001491:exon5:c.A510G:p.S170S	8qB3.3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.912181591	1	4.36E-08	CAC	synonymous	NA	NA	NA	NA
M3_p20	chr8	78436366	12A2p6	cell line	sgMsh2	78436366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	160	0	0	NA	exonic	Pou4f2	nonsynonymous SNV	Pou4f2:NM_138944:exon1:c.C39A:p.S13R	8qC1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.9991796	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	83915541	12A2p6	cell line	sgMsh2	83915541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	90	0	0	NA	exonic	Adgrl1	nonsynonymous SNV	Adgrl1:NM_181039:exon2:c.A43G:p.T15A	8qC2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996239	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	83929624	12A2p6	cell line	sgMsh2	83929624	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	310	0	0	NA	exonic	Adgrl1	stopgain	Adgrl1:NM_181039:exon5:c.T555A:p.Y185X	8qC2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.12E-09	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	84134730	12A2p6	cell line	sgMsh2	84134730	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	41	0	0	NA	exonic	Cc2d1a	frameshift deletion	"Cc2d1a:NM_001381872:exon22:c.2118delG:p.R707Gfs*3,Cc2d1a:NM_001381871:exon23:c.2322delG:p.R775Gfs*3,Cc2d1a:NM_001381873:exon23:c.2229delG:p.R744Gfs*3,Cc2d1a:NM_145970:exon23:c.2325delG:p.R776Gfs*3"	8qC2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.859044799	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M3_p20	chr8	84234985	12A2p6	cell line	sgMsh2	84234985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	88	0	0	NA	exonic	Zswim4	synonymous SNV	Zswim4:NM_172503:exon2:c.A258G:p.E86E	8qC2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995692	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr8	84611681	12A2p6	cell line	sgMsh2	84611681	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	154	0	0	NA	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon34:c.C5048T:p.T1683M,Cacna1a:NM_001252060:exon35:c.C5189T:p.T1730M,Cacna1a:NM_001252061:exon35:c.C5189T:p.T1730M,Cacna1a:NM_007578:exon35:c.C5189T:p.T1730M"	8qC2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999952	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	84902752	12A2p6	cell line	sgMsh2	84902753	CA	AT	DBS	Mutect2;Vardict	2	0.249	20	0	0	NA	exonic	Klf1	nonframeshift substitution	Klf1:NM_010635:exon2:c.151_152AT:p.H51I	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	84997034	12A2p6	cell line	sgMsh2	84997034	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	95	0	0	NA	exonic	Hook2	frameshift deletion	"Hook2:NM_001372361:exon10:c.977delA:p.K327Sfs*4,Hook2:NM_001167991:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001363497:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372357:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372358:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372359:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372360:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001372362:exon12:c.779delA:p.K261Sfs*4,Hook2:NM_133255:exon12:c.1184delA:p.K396Sfs*4,Hook2:NM_001363498:exon13:c.1112delA:p.K372Sfs*4"	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr8	87471767	12A2p6	cell line	sgMsh2	87471767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	98	0	0	NA	exonic	Cbln1	synonymous SNV	Cbln1:NM_019626:exon2:c.T309C:p.T103T	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9985316	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr8	87782994	12A2p6	cell line	sgMsh2	87782994	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	76	0	0	NA	exonic	Zfp423	nonsynonymous SNV	"Zfp423:NM_001310520:exon2:c.T346A:p.S116T,Zfp423:NM_033327:exon4:c.T721A:p.S241T"	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9990262	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	88156793	12A2p6	cell line	sgMsh2	88156793	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	277	0	0	NA	exonic	Heatr3	nonsynonymous SNV	Heatr3:NM_172757:exon9:c.A1253G:p.H418R	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	2.13E-09	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	88705480	12A2p6	cell line	sgMsh2	88705480	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Cyld	synonymous SNV	"Cyld:NM_001128170:exon2:c.T105G:p.T35T,Cyld:NM_173369:exon2:c.T105G:p.T35T,Cyld:NM_001128171:exon3:c.T105G:p.T35T,Cyld:NM_001276279:exon3:c.T105G:p.T35T"	8qC3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9982057	CTC	synonymous	ACAA	10	ACAAACAAAC	NA
M3_p20	chr8	91106877	12A2p6	cell line	sgMsh2	91106877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	138	0	0	NA	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon15:c.T2279C:p.I760T,Rbl2:NM_001282001:exon16:c.T2378C:p.I793T,Rbl2:NM_011250:exon16:c.T2408C:p.I803T"	8qC4	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.752771216	2	0.6308839	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	92678500	12A2p6	cell line	sgMsh2	92678500	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.19	69	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.C995T:p.T332M,Irx6:NM_022428:exon5:c.C995T:p.T332M"	8qC5	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9374732	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	93271855	12A2p6	cell line	sgMsh2	93271855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	269	0	0	NA	exonic	Ces1f	nonsynonymous SNV	Ces1f:NM_144930:exon4:c.G512A:p.R171H	8qC5	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.845760601	1	0.9971191	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	102650639	12A2p6	cell line	sgMsh2	102650639	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	157	0	0	NA	exonic	Cdh11	synonymous SNV	Cdh11:NM_009866:exon9:c.C1374A:p.V458V	8qD1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.575648577	2	0.9999669	AGA	synonymous	NA	NA	NA	NA
M3_p20	chr8	104617794	12A2p6	cell line	sgMsh2	104617794	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	177	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon12:c.C1537A:p.P513T,Cdh16:NM_001252628:exon13:c.C1627A:p.P543T,Cdh16:NM_007663:exon13:c.C1627A:p.P543T"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.999999	GGG	nonsynonymous	GGGCCT	17	GGGCCTGGGCCTGGGCC	NA
M3_p20	chr8	105049902	12A2p6	cell line	sgMsh2	105049902	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	208	0	0	NA	exonic	Ces3a	nonsynonymous SNV	"Ces3a:NM_001164681:exon2:c.A121T:p.T41S,Ces3a:NM_198672:exon2:c.A121T:p.T41S"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	TAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr8	105138100	12A2p6	cell line	sgMsh2	105138100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	35	0	0	NA	exonic	Ces4a	nonsynonymous SNV	Ces4a:NM_146213:exon2:c.A208G:p.T70A	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	0.9696504	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	105308779	12A2p6	cell line	sgMsh2	105308779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	64	0	0	NA	exonic	Elmo3	synonymous SNV	Elmo3:NM_172760:exon15:c.G1506A:p.L502L	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9333493	TGA	synonymous	NA	NA	NA	NA
M3_p20	chr8	105329467	12A2p6	cell line	sgMsh2	105329467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	124	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon22:c.T3524C:p.L1175P	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	0.9998375	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	105519050	12A2p6	cell line	sgMsh2	105519050	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.429	9	0	0	NA	exonic	Hsd11b2	synonymous SNV	Hsd11b2:NM_008289:exon1:c.T186A:p.A62A	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9139942	CTG	synonymous	GCTG	19	GCTGGCTGGTGCTGGCTGG	NA
M3_p20	chr8	105842526	12A2p6	cell line	sgMsh2	105842526	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	exonic	Tsnaxip1	nonsynonymous SNV	Tsnaxip1:NM_024445:exon12:c.T1507C:p.F503L	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.97860258	1	0.9999896	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	174	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999988	GGC	synonymous	NA	NA	NA	NA
M3_p20	chr8	106543874	12A2p6	cell line	sgMsh2	106543874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon10:c.A1382G:p.K461R,Cdh3:NM_007665:exon10:c.A1379G:p.K460R"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9995064	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	106555377	12A2p6	cell line	sgMsh2	106555377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	99	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon16:c.A2396G:p.Y799C,Cdh3:NM_007665:exon16:c.A2393G:p.Y798C"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	106916184	12A2p6	cell line	sgMsh2	106916184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	323	0	0	NA	exonic	Utp4	synonymous SNV	"Utp4:NM_001358982:exon13:c.A1473G:p.A491A,Utp4:NM_011574:exon13:c.A1473G:p.A491A"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.05E-09	CAG	synonymous	CAGT	9	CAGTCAGTC	NA
M3_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	110	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999034	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr8	108949552	12A2p6	cell line	sgMsh2	108949552	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.232	43	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.G7233A:p.A2411A	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9908908	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	464	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M3_p20	chr8	110593725	12A2p6	cell line	sgMsh2	110593725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	126	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon79:c.A13400G:p.Q4467R	8qD3	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	75	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9989577	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr8	111259141	12A2p6	cell line	sgMsh2	111259141	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.247	11	0	0	NA	exonic	Glg1	nonsynonymous SNV	"Glg1:NM_001368315:exon1:c.T56C:p.L19P,Glg1:NM_009149:exon1:c.T56C:p.L19P"	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9245435	CAG	nonsynonymous	AGC	12	AGCAGCAGCAGC	NA
M3_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	56	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.584504709	2	0.9142985	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	111890877	12A2p6	cell line	sgMsh2	111890877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	116	0	0	NA	exonic	Chst5	nonsynonymous SNV	Chst5:NM_019950:exon2:c.T110C:p.L37P	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999358	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	112753874	12A2p6	cell line	sgMsh2	112753874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	328	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon7:c.T952C:p.S318P	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	1.24E-09	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	113777746	12A2p6	cell line	sgMsh2	113777746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	135	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon4:c.A712C:p.S238R	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999824	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	117129198	12A2p6	cell line	sgMsh2	117129198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	253	0	0	NA	exonic	Bco1	nonsynonymous SNV	"Bco1:NM_001163028:exon9:c.T1231C:p.Y411H,Bco1:NM_021486:exon9:c.T1231C:p.Y411H"	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	6.78E-09	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	119773276	12A2p6	cell line	sgMsh2	119773276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	139	0	0	NA	exonic	Meak7	nonsynonymous SNV	Meak7:NM_028883:exon2:c.T143G:p.M48R	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999866	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	119941912	12A2p6	cell line	sgMsh2	119941912	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	47	0	0	NA	exonic	Usp10	synonymous SNV	"Usp10:NM_001310630:exon4:c.T948A:p.P316P,Usp10:NM_009462:exon4:c.T951A:p.P317P"	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9930451	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr8	120083356	12A2p6	cell line	sgMsh2	120083356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	175	0	0	NA	exonic	Zdhhc7	synonymous SNV	Zdhhc7:NM_133967:exon7:c.C624T:p.C208C	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999988	TGC	synonymous	NA	NA	NA	NA
M3_p20	chr8	121782243	12A2p6	cell line	sgMsh2	121782243	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	101	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon3:c.A1243G:p.T415A	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.832476403	1	0.9447071	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	105	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9998644	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	121888323	12A2p6	cell line	sgMsh2	121888323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	146	0	0	NA	exonic	Slc7a5	nonsynonymous SNV	Slc7a5:NM_011404:exon3:c.T784C:p.W262R	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999917	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	122269834	12A2p6	cell line	sgMsh2	122269834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	118	0	0	NA	exonic	Zfp469	nonsynonymous SNV	Zfp469:NM_001362883:exon3:c.C9768A:p.N3256K	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.929893855	1	0.999048	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	122439459	12A2p6	cell line	sgMsh2	122439459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	131	0	0	NA	exonic	Mvd	synonymous SNV	Mvd:NM_138656:exon4:c.C324T:p.S108S	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999768	AGC	synonymous	GCTGAG	13	GCTGAGGCTGAGG	NA
M3_p20	chr8	123199101	12A2p6	cell line	sgMsh2	123199101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	135	0	0	NA	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon4:c.A294G:p.I98M	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999824	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	123200246	12A2p6	cell line	sgMsh2	123200246	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	124	0	0	NA	exonic	Dpep1	frameshift deletion	Dpep1:NM_007876:exon8:c.808delA:p.N270Tfs*54	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3_p20	chr8	123363054	12A2p6	cell line	sgMsh2	123363054	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	80	0	0	NA	exonic	Spire2	synonymous SNV	Spire2:NM_172287:exon11:c.T1623G:p.T541T	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9992579	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr8	123384396	12A2p6	cell line	sgMsh2	123384396	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	280	0	0	NA	exonic	Tcf25	nonsynonymous SNV	"Tcf25:NM_001286362:exon4:c.C521T:p.A174V,Tcf25:NM_001286363:exon4:c.C521T:p.A174V,Tcf25:NM_001359076:exon4:c.C521T:p.A174V,Tcf25:NM_001037877:exon5:c.C596T:p.A199V,Tcf25:NM_001037878:exon5:c.C596T:p.A199V,Tcf25:NM_001359075:exon5:c.C596T:p.A199V,Tcf25:NM_025804:exon5:c.C596T:p.A199V"	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	19	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9550693	TTG	synonymous	NA	NA	NA	NA
M3_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	192	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M3_p20	chr8	123969761	12A2p6	cell line	sgMsh2	123969761	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	73	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon3:c.C775A:p.L259M	8qE2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	2	1	1	0.9988061	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	124529914	12A2p6	cell line	sgMsh2	124529914	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	143	0	0	NA	exonic	Cog2	nonsynonymous SNV	Cog2:NM_029746:exon5:c.T398G:p.L133R	8qE2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999898	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	50	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.91	4.029540036	NA	1	1	1	0.9943212	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	5322821	12A2p6	cell line	sgMsh2	5322821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	358	0	0	NA	exonic	Casp4	synonymous SNV	"Casp4:NM_001379318:exon3:c.T96A:p.A32A,Casp4:NM_001379320:exon3:c.T264A:p.A88A,Casp4:NM_001379323:exon3:c.T24A:p.S8S,Casp4:NM_007609:exon3:c.T264A:p.A88A"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.828048337	1	0.9934735	CTA	synonymous	NA	NA	NA	NA
M3_p20	chr9	5352758	12A2p6	cell line	sgMsh2	5352758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	234	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon6:c.T579G:p.D193E	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	2.20E-08	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	7171000	12A2p6	cell line	sgMsh2	7171000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	380	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon5:c.T628C:p.Y210H,Dync2h1:NM_029851:exon5:c.T628C:p.Y210H"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	9046615	12A2p6	cell line	sgMsh2	9046615	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	0	0	NA	exonic	Arhgap42	nonsynonymous SNV	"Arhgap42:NM_001372566:exon7:c.G620T:p.S207I,Arhgap42:NM_027823:exon7:c.G620T:p.S207I,Arhgap42:NM_001372563:exon8:c.G722T:p.S241I,Arhgap42:NM_001372564:exon8:c.G722T:p.S241I,Arhgap42:NM_001372565:exon8:c.G722T:p.S241I,Arhgap42:NM_001372567:exon8:c.G722T:p.S241I"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997663	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	9115750	12A2p6	cell line	sgMsh2	9115750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	148	0	0	NA	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372570:exon3:c.T228C:p.A76A,Arhgap42:NM_001372563:exon4:c.T324C:p.A108A,Arhgap42:NM_001372564:exon4:c.T324C:p.A108A,Arhgap42:NM_001372565:exon4:c.T324C:p.A108A,Arhgap42:NM_001372566:exon4:c.T324C:p.A108A,Arhgap42:NM_001372567:exon4:c.T324C:p.A108A,Arhgap42:NM_001372568:exon4:c.T324C:p.A108A,Arhgap42:NM_027823:exon4:c.T324C:p.A108A"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.766055413	2	0.5073482	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	9180096	12A2p6	cell line	sgMsh2	9180096	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	142	0	0	NA	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372564:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372565:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372566:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372567:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372568:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_001372569:exon2:c.181delT:p.S61Pfs*26,Arhgap42:NM_027823:exon2:c.181delT:p.S61Pfs*26"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chr9	9706075	12A2p6	cell line	sgMsh2	9706075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	509	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1732G:p.S578G,Cntn5:NM_001170787:exon19:c.A2347G:p.S783G"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	9706084	12A2p6	cell line	sgMsh2	9706084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	494	0	0	NA	exonic	Cntn5	nonsynonymous SNV	"Cntn5:NM_001033359:exon15:c.A1723C:p.S575R,Cntn5:NM_001170787:exon19:c.A2338C:p.S780R"	9qA1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	14464244	12A2p6	cell line	sgMsh2	14464244	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	124	0	0	NA	exonic	Kdm4d	frameshift deletion	Kdm4d:NM_173433:exon2:c.317delA:p.K106Sfs*61	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chr9	14751912	12A2p6	cell line	sgMsh2	14751912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	13	0	0	NA	exonic	Fut4	nonsynonymous SNV	Fut4:NM_010242:exon1:c.A85G:p.T29A	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9337146	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	15307798	12A2p6	cell line	sgMsh2	15307798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	262	0	0	NA	exonic	Taf1d	synonymous SNV	"Taf1d:NM_027261:exon2:c.A45G:p.R15R,Taf1d:NM_029248:exon2:c.A45G:p.R15R"	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	4.13E-09	GAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	15962782	12A2p6	cell line	sgMsh2	15962782	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	119	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon18:c.T10550A:p.L3517Q	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9838937	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	195	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	15996745	12A2p6	cell line	sgMsh2	15996745	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	301	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T7972G:p.W2658G	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.22E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	16030011	12A2p6	cell line	sgMsh2	16030011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	54	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.A3995G:p.D1332G	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.907753525	1	0.9765971	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	16031155	12A2p6	cell line	sgMsh2	16031155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	171	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon5:c.T3932C:p.M1311T	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.841332535	1	0.9837057	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	16376776	12A2p6	cell line	sgMsh2	16376776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	473	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon2:c.A1462G:p.T488A	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	18988575	12A2p6	cell line	sgMsh2	18988575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	290	0	0	NA	exonic	Olfr834	nonsynonymous SNV	Olfr834:NM_001011823:exon1:c.A586G:p.N196D	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	1.47E-09	TAA	nonsynonymous	TAA	8	TAATAATA	NA
M3_p20	chr9	19249191	12A2p6	cell line	sgMsh2	19249191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	297	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T207C:p.T69T	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.29E-09	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	19249203	12A2p6	cell line	sgMsh2	19249203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	291	0	0	NA	exonic	Olfr843	synonymous SNV	Olfr843:NM_146567:exon1:c.T195C:p.N65N	9qA2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.44E-09	GAT	synonymous	NA	NA	NA	NA
M3_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	175	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999988	TAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	19808619	12A2p6	cell line	sgMsh2	19808619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	779	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G300T:p.Q100H	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	20891529	12A2p6	cell line	sgMsh2	20891529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	43	0	0	NA	exonic	Ppan	nonsynonymous SNV	Ppan:NM_145610:exon10:c.A980G:p.N327S	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9908908	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21191383	12A2p6	cell line	sgMsh2	21191383	-	G	Insertion	Mutect2;Vardict	2	0.161	38	0	0	NA	exonic	Pde4a	frameshift insertion	"Pde4a:NM_001310750:exon2:c.192dupG:p.A65Gfs*28,Pde4a:NM_183408:exon2:c.363dupG:p.A122Gfs*28"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.712918622	NA	NA	CAG	frameshift	NA	NA	NA	1
M3_p20	chr9	21266748	12A2p6	cell line	sgMsh2	21266748	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	158	0	0	NA	exonic	Atg4d	nonsynonymous SNV	Atg4d:NM_153583:exon2:c.T245G:p.V82G	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.867900931	1	0.9953245	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21345940	12A2p6	cell line	sgMsh2	21345940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	143	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon14:c.A1174G:p.K392E,Slc44a2:NM_001359227:exon14:c.A1174G:p.K392E,Slc44a2:NM_152808:exon14:c.A1180G:p.K394E"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999898	CAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21397582	12A2p6	cell line	sgMsh2	21397582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	113	0	0	NA	exonic	Ilf3	nonsynonymous SNV	"Ilf3:NM_001042707:exon12:c.T1294C:p.F432L,Ilf3:NM_001042709:exon12:c.T1294C:p.F432L,Ilf3:NM_001042708:exon13:c.T1333C:p.F445L,Ilf3:NM_001277321:exon13:c.T1333C:p.F445L,Ilf3:NM_010561:exon13:c.T1333C:p.F445L,Ilf3:NM_001277322:exon14:c.T1333C:p.F445L"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.735058952	2	0.6909605	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21589965	12A2p6	cell line	sgMsh2	21589965	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Yipf2	nonsynonymous SNV	"Yipf2:NM_001359298:exon7:c.T706A:p.S236T,Yipf2:NM_138303:exon7:c.T706A:p.S236T,Yipf2:NM_001205157:exon8:c.T706A:p.S236T,Yipf2:NM_001205158:exon8:c.T706A:p.S236T,Yipf2:NM_001359299:exon8:c.T706A:p.S236T"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999796	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21635537	12A2p6	cell line	sgMsh2	21635537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	73	0	0	NA	exonic	Smarca4	synonymous SNV	"Smarca4:NM_001174078:exon4:c.T357C:p.G119G,Smarca4:NM_001174079:exon4:c.T357C:p.G119G,Smarca4:NM_001357764:exon4:c.T357C:p.G119G,Smarca4:NM_011417:exon4:c.T357C:p.G119G"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9988061	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr9	21775738	12A2p6	cell line	sgMsh2	21775738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	79	0	0	NA	exonic	Kank2	nonsynonymous SNV	Kank2:NM_145611:exon7:c.A1787G:p.Y596C	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9992058	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21935589	12A2p6	cell line	sgMsh2	21935589	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	98	0	0	NA	exonic	Ccdc159	nonsynonymous SNV	"Ccdc159:NM_001164614:exon12:c.T1192A:p.W398R,Ccdc159:NM_025977:exon12:c.T1168A:p.W390R"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997817	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21956858	12A2p6	cell line	sgMsh2	21956858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	exonic	Swsap1	nonsynonymous SNV	Swsap1:NM_025870:exon2:c.C425T:p.A142V	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9987222	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21959360	12A2p6	cell line	sgMsh2	21959360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	168	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon8:c.A1223C:p.D408A	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999981	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	21962265	12A2p6	cell line	sgMsh2	21962265	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.5	9	0	0	NA	exonic	Epor	nonsynonymous SNV	Epor:NM_010149:exon2:c.T187C:p.F63L	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9139942	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	22127235	12A2p6	cell line	sgMsh2	22127235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	126	0	0	NA	exonic	Acp5	nonsynonymous SNV	"Acp5:NM_001102404:exon5:c.T769C:p.Y257H,Acp5:NM_001102405:exon5:c.T769C:p.Y257H,Acp5:NM_007388:exon5:c.T769C:p.Y257H"	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999675	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	22364010	12A2p6	cell line	sgMsh2	22364010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	163	0	0	NA	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon9:c.T1598G:p.L533R	9qA3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.823620271	1	0.9526836	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	24625670	12A2p6	cell line	sgMsh2	24625670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	116	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.A455G:p.N152S	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.828048337	1	0.9438343	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	26780766	12A2p6	cell line	sgMsh2	26780766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	298	0	0	NA	exonic	Glb1l2	nonsynonymous SNV	"Glb1l2:NM_001310768:exon6:c.T559C:p.Y187H,Glb1l2:NM_153803:exon7:c.T607C:p.Y203H"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.27E-09	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	119	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999476	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M3_p20	chr9	27322853	12A2p6	cell line	sgMsh2	27322853	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	114	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384263:exon10:c.T1261C:p.Y421H,Igsf9b:NM_001384264:exon10:c.T1261C:p.Y421H"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999264	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	27323251	12A2p6	cell line	sgMsh2	27323251	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	164	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon11:c.G1411A:p.G471R,Igsf9b:NM_001384263:exon11:c.G1411A:p.G471R,Igsf9b:NM_001384264:exon11:c.G1411A:p.G471R"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999975	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	33	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9821776	TCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	95	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997323	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr9	32317590	12A2p6	cell line	sgMsh2	32317590	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.372	35	0	0	NA	exonic	Kcnj5	frameshift deletion	Kcnj5:NM_010605:exon4:c.1250delG:p.G417Afs*63	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M3_p20	chr9	35562004	12A2p6	cell line	sgMsh2	35562004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	233	0	0	NA	exonic	Hyls1	nonsynonymous SNV	Hyls1:NM_029762:exon4:c.A115G:p.T39A	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	3.12E-08	GTA	nonsynonymous	AGC	9	AGCAGCAGC	NA
M3_p20	chr9	36743507	12A2p6	cell line	sgMsh2	36743507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	128	0	0	NA	exonic	Stt3a	nonsynonymous SNV	Stt3a:NM_008408:exon13:c.T1463A:p.I488N	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999716	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	150	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999936	TAT	synonymous	NA	NA	NA	NA
M3_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	486	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M3_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	142	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr9	38047923	12A2p6	cell line	sgMsh2	38047923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	480	0	0	NA	exonic	Olfr884	nonsynonymous SNV	Olfr884:NM_001011798:exon1:c.T700G:p.S234A	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	251	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	7.62E-09	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38349215	12A2p6	cell line	sgMsh2	38349215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	678	0	0	NA	exonic	Olfr898	nonsynonymous SNV	Olfr898:NM_146871:exon1:c.C131A:p.T44N	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	ACT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	706	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	GTT	synonymous	NA	NA	NA	NA
M3_p20	chr9	38368241	12A2p6	cell line	sgMsh2	38368241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	367	0	0	NA	exonic	Olfr250;Olfr899	nonsynonymous SNV	"Olfr899:NM_146479:exon1:c.C694T:p.L232F,Olfr250:NM_207552:exon1:c.C694T:p.L232F"	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.876757063	1	0.9999867	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38430465	12A2p6	cell line	sgMsh2	38430465	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	563	0	0	NA	exonic	Olfr901	nonsynonymous SNV	Olfr901:NM_001011806:exon1:c.A182T:p.Y61F	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38488319	12A2p6	cell line	sgMsh2	38488319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	118	0	0	NA	exonic	Olfr906	nonsynonymous SNV	Olfr906:NM_146803:exon1:c.T289C:p.C97R	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999944	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	512	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	TTT	synonymous	NA	NA	NA	NA
M3_p20	chr9	38581355	12A2p6	cell line	sgMsh2	38581355	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	378	0	0	NA	exonic	Olfr912	nonsynonymous SNV	Olfr912:NM_146810:exon2:c.C77T:p.P26L	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	38657680	12A2p6	cell line	sgMsh2	38657680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	177	0	0	NA	exonic	Olfr916	synonymous SNV	Olfr916:NM_146784:exon1:c.T711G:p.A237A	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999999	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	38827704	12A2p6	cell line	sgMsh2	38827704	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	121	0	0	NA	exonic	Olfr923	synonymous SNV	Olfr923:NM_146816:exon1:c.C12T:p.Y4Y	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999543	ACA	synonymous	NA	NA	NA	NA
M3_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	329	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.03E-09	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr9	39184623	12A2p6	cell line	sgMsh2	39184623	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	550	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.T444G:p.I148M	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1	TTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	365	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39319155	12A2p6	cell line	sgMsh2	39319155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	296	0	0	NA	exonic	Olfr948	nonsynonymous SNV	Olfr948:NM_001011756:exon1:c.T458G:p.V153G	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	1.14E-08	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39484525	12A2p6	cell line	sgMsh2	39484525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	432	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A727G:p.T243A	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.943178052	1	1.13E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39623642	12A2p6	cell line	sgMsh2	39623642	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	430	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.A518C:p.E173A	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GAG	nonsynonymous	GTGAG	10	GTGAGGTGAG	NA
M3_p20	chr9	39819815	12A2p6	cell line	sgMsh2	39819815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	486	0	0	NA	exonic	Olfr970	nonsynonymous SNV	Olfr970:NM_146611:exon1:c.A175G:p.M59V	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	1.04E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39839779	12A2p6	cell line	sgMsh2	39839779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	476	0	0	NA	exonic	Olfr971	nonsynonymous SNV	Olfr971:NM_146614:exon1:c.T344C:p.L115S	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	39910269	12A2p6	cell line	sgMsh2	39910269	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	206	0	0	NA	exonic	Olfr229	synonymous SNV	Olfr229:NM_146613:exon1:c.A465C:p.G155G	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GAT	synonymous	NA	NA	NA	NA
M3_p20	chr9	41157421	12A2p6	cell line	sgMsh2	41157421	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.5	4	0	0	NA	exonic	Ubash3b	synonymous SNV	Ubash3b:NM_176860:exon1:c.C6T:p.A2A	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.8781315	CGG	synonymous	CG	8	CGCGCGCG	NA
M3_p20	chr9	42377887	12A2p6	cell line	sgMsh2	42377887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	100	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon8:c.T1381C:p.C461R,Tecta:NM_009347:exon8:c.T1381C:p.C461R,Tecta:NM_001378602:exon9:c.T1381C:p.C461R"	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998094	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	172	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.757199282	2	0.6989175	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	44112585	12A2p6	cell line	sgMsh2	44112585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	59	0	0	NA	exonic	Rnf26	nonsynonymous SNV	Rnf26:NM_153762:exon1:c.T365C:p.M122T	9qA5.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9969126	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44333095	12A2p6	cell line	sgMsh2	44333095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	232	0	0	NA	exonic	Dpagt1	nonsynonymous SNV	"Dpagt1:NM_001364464:exon8:c.A879C:p.Q293H,Dpagt1:NM_007875:exon9:c.A1206C:p.Q402H"	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	2.51E-08	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	185	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M3_p20	chr9	44506456	12A2p6	cell line	sgMsh2	44506456	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.T1590A:p.D530E,Bcl9l:NM_030256:exon7:c.T1701A:p.D567E"	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9987222	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	43	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.890041261	1	0.9556336	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44683909	12A2p6	cell line	sgMsh2	44683909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	113	0	0	NA	exonic	Treh	nonsynonymous SNV	"Treh:NM_001277847:exon9:c.C938T:p.A313V,Treh:NM_001277851:exon9:c.C848T:p.A283V,Treh:NM_021481:exon10:c.C1043T:p.A348V"	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.797051875	1	0.8312734	GCG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44823374	12A2p6	cell line	sgMsh2	44823374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	333	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6170G:p.Y2057C	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.03E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	44848628	12A2p6	cell line	sgMsh2	44848628	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	131	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon3:c.T1923G:p.I641M	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999768	GAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	45002239	12A2p6	cell line	sgMsh2	45002239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	162	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon5:c.A197T:p.H66L	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999972	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	127	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999696	TGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	45672814	12A2p6	cell line	sgMsh2	45672814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	45	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon7:c.A1402G:p.S468G	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9920399	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	45743072	12A2p6	cell line	sgMsh2	45743072	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	55	0	0	NA	exonic	Dscaml1	synonymous SNV	Dscaml1:NM_001081270:exon24:c.G4227A:p.G1409G	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9959514	GGG	synonymous	G	5	GGGGG	NA
M3_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	63	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.969746448	1	0.9954881	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	48394182	12A2p6	cell line	sgMsh2	48394182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	284	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A871G:p.S291G	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.70E-09	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	48394198	12A2p6	cell line	sgMsh2	48394198	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	262	0	0	NA	exonic	Nxpe4	nonsynonymous SNV	Nxpe4:NM_172921:exon7:c.A887T:p.N296I	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	4.13E-09	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	50541135	12A2p6	cell line	sgMsh2	50541135	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	29	0	0	NA	exonic	Bco2	frameshift deletion	"Bco2:NM_001359610:exon6:c.632delA:p.K211Rfs*22,Bco2:NM_133217:exon6:c.632delA:p.K211Rfs*22"	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTT	frameshift	TCTT	9	TCTTTCTTT	-1
M3_p20	chr9	50695511	12A2p6	cell line	sgMsh2	50695511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	173	0	0	NA	exonic	Dixdc1	nonsynonymous SNV	"Dixdc1:NM_001311069:exon6:c.T804G:p.D268E,Dixdc1:NM_001374656:exon6:c.T729G:p.D243E,Dixdc1:NM_178118:exon6:c.T807G:p.D269E"	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.965318382	1	0.9999896	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	50771879	12A2p6	cell line	sgMsh2	50771879	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	260	0	0	NA	exonic	Fdxacb1	nonsynonymous SNV	Fdxacb1:NM_198675:exon5:c.A1141C:p.I381L	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	4.59E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	51101073	12A2p6	cell line	sgMsh2	51101073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	105	0	0	NA	exonic	Hoatz	synonymous SNV	Hoatz:NM_177702:exon2:c.C246A:p.P82P	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9998644	AGG	synonymous	AAAGGG	12	AAAGGGAAAGGG	NA
M3_p20	chr9	51846135	12A2p6	cell line	sgMsh2	51846135	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	240	0	0	NA	exonic	Arhgap20	nonsynonymous SNV	Arhgap20:NM_175535:exon13:c.C1426A:p.Q476K	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.509227587	2	0.999975	TCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	53912743	12A2p6	cell line	sgMsh2	53912743	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	308	0	0	NA	exonic	Elmod1	synonymous SNV	Elmod1:NM_177769:exon11:c.G960T:p.S320S	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9996064	CCG	synonymous	NA	NA	NA	NA
M3_p20	chr9	54628565	12A2p6	cell line	sgMsh2	54628565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	139	0	0	NA	exonic	Acsbg1	synonymous SNV	Acsbg1:NM_053178:exon3:c.T285C:p.C95C	9qA5.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	0.999984	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr9	54865393	12A2p6	cell line	sgMsh2	54865393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	434	0	0	NA	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon2:c.T106C:p.Y36H	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	55035286	12A2p6	cell line	sgMsh2	55035286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	329	0	0	NA	exonic	Chrnb4	nonsynonymous SNV	Chrnb4:NM_148944:exon5:c.A703G:p.T235A	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.783767677	2	0.556858	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	55859035	12A2p6	cell line	sgMsh2	55859035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	317	0	0	NA	exonic	Scaper	nonsynonymous SNV	"Scaper:NM_001081341:exon13:c.T1456C:p.S486P,Scaper:NM_001357652:exon13:c.T1438C:p.S480P"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.07E-09	GAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	56042647	12A2p6	cell line	sgMsh2	56042647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	192	0	0	NA	exonic	Rcn2	nonsynonymous SNV	"Rcn2:NM_001278274:exon2:c.A226G:p.I76V,Rcn2:NM_011992:exon2:c.A226G:p.I76V"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	898	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.163838441	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	290	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9994388	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M3_p20	chr9	56926737	12A2p6	cell line	sgMsh2	56926737	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	101	0	0	NA	exonic	Snx33	nonsynonymous SNV	Snx33:NM_175483:exon1:c.A47G:p.K16R	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	58086545	12A2p6	cell line	sgMsh2	58086545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	84	0	0	NA	exonic	Ccdc33	nonsynonymous SNV	"Ccdc33:NM_001311085:exon3:c.A317G:p.E106G,Ccdc33:NM_029212:exon3:c.A317G:p.E106G,Ccdc33:NM_001166282:exon5:c.A1052G:p.E351G"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994345	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	58362912	12A2p6	cell line	sgMsh2	58362912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	83	0	0	NA	exonic	Tbc1d21	nonsynonymous SNV	"Tbc1d21:NM_001357455:exon6:c.A482G:p.Y161C,Tbc1d21:NM_028854:exon6:c.A482G:p.Y161C"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9993948	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	174	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M3_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	181	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999992	GGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	59895380	12A2p6	cell line	sgMsh2	59895380	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	70	0	0	NA	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon32:c.A6149C:p.K2050T	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9985363	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	60056985	12A2p6	cell line	sgMsh2	60056985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	158	0	0	NA	exonic	Thsd4	nonsynonymous SNV	"Thsd4:NM_172444:exon2:c.A143G:p.N48S,Thsd4:NM_001040426:exon8:c.A1223G:p.N408S"	9qB	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.633213434	2	0.999351	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	64301209	12A2p6	cell line	sgMsh2	64301209	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	117	0	0	NA	exonic	Tipin	stopgain	"Tipin:NM_001324556:exon7:c.C634T:p.Q212X,Tipin:NM_001324557:exon7:c.C634T:p.Q212X,Tipin:NM_001324558:exon7:c.C634T:p.Q212X,Tipin:NM_025372:exon7:c.C634T:p.Q212X"	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.243543629	3	0.9999832	GCA	nonsynonymous	AGGC	9	AGGCAGGCA	NA
M3_p20	chr9	64924524	12A2p6	cell line	sgMsh2	64924524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	259	0	0	NA	exonic	Slc24a1	nonsynonymous SNV	Slc24a1:NM_144813:exon10:c.T3290C:p.M1097T	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	4.84E-09	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	65128477	12A2p6	cell line	sgMsh2	65128477	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	95	0	0	NA	exonic	Igdcc4	nonsynonymous SNV	"Igdcc4:NM_001290315:exon11:c.C1895T:p.A632V,Igdcc4:NM_020043:exon11:c.C1892T:p.A631V"	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997323	GCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	65398606	12A2p6	cell line	sgMsh2	65398606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	67	0	0	NA	exonic	Rasl12	synonymous SNV	"Rasl12:NM_001033158:exon1:c.G42A:p.P14P,Rasl12:NM_001162923:exon1:c.G42A:p.P14P"	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9563423	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr9	65502263	12A2p6	cell line	sgMsh2	65502263	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	70	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon14:c.G1390A:p.G464S	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9985363	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	65509652	12A2p6	cell line	sgMsh2	65509652	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	220	0	0	NA	exonic	Ankdd1a	nonsynonymous SNV	Ankdd1a:NM_001370871:exon6:c.G534T:p.K178N	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.974174514	1	0.9999996	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	67898684	12A2p6	cell line	sgMsh2	67898685	TG	CA	DBS	Mutect2;Vardict	2	0.254	293	0	0	NA	exonic	Vps13c	nonframeshift substitution	Vps13c:NM_177184:exon24:c.2339_2340CA:p.L780P	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	67919278	12A2p6	cell line	sgMsh2	67919278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	156	0	0	NA	exonic	Vps13c	synonymous SNV	Vps13c:NM_177184:exon38:c.T4200C:p.D1400D	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999958	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	56	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9962165	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	97	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9997663	GCT	synonymous	NA	NA	NA	NA
M3_p20	chr9	70341998	12A2p6	cell line	sgMsh2	70341998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	93	0	0	NA	exonic	Myo1e	nonsynonymous SNV	Myo1e:NM_181072:exon14:c.T1379C:p.M460T	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996933	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	70607522	12A2p6	cell line	sgMsh2	70607522	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	83	0	0	NA	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon8:c.A1613G:p.Y538C,Mindy2:NM_172772:exon8:c.A1613G:p.Y538C"	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9993948	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	72331408	12A2p6	cell line	sgMsh2	72331408	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	296	0	0	NA	exonic	Zfp280d	frameshift deletion	"Zfp280d:NM_001311105:exon16:c.2005delA:p.A670Pfs*1,Zfp280d:NM_146224:exon16:c.2005delA:p.A670Pfs*2"	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.938749986	NA	NA	CAA	frameshift	NA	NA	NA	-1
M3_p20	chr9	72593356	12A2p6	cell line	sgMsh2	72593356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	304	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon4:c.T397C:p.Y133H	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.18E-09	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	72617068	12A2p6	cell line	sgMsh2	72617068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	184	0	0	NA	exonic	Rfx7	synonymous SNV	Rfx7:NM_001033536:exon9:c.T1539C:p.N513N	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	ATG	synonymous	NA	NA	NA	NA
M3_p20	chr9	74218759	12A2p6	cell line	sgMsh2	74218759	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	208	0	0	NA	exonic	Wdr72	synonymous SNV	Wdr72:NM_001033500:exon18:c.T3171G:p.S1057S	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.93432192	1	0.9999867	CTT	synonymous	NA	NA	NA	NA
M3_p20	chr9	75337355	12A2p6	cell line	sgMsh2	75337355	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	336	0	0	NA	exonic	Gnb5	nonsynonymous SNV	"Gnb5:NM_138719:exon7:c.A730G:p.S244G,Gnb5:NM_010313:exon9:c.A856G:p.S286G"	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	1.02E-09	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	75395541	12A2p6	cell line	sgMsh2	75395541	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	206	0	0	NA	exonic	Mapk6	synonymous SNV	"Mapk6:NM_015806:exon3:c.T669C:p.A223A,Mapk6:NM_027418:exon3:c.T669C:p.A223A"	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.27454009	3	4.11E-08	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	75397609	12A2p6	cell line	sgMsh2	75397609	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	295	0	0	NA	exonic	Mapk6	synonymous SNV	"Mapk6:NM_015806:exon2:c.A525T:p.A175A,Mapk6:NM_027418:exon2:c.A525T:p.A175A"	9qD	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.394097872	3	0.9970726	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr9	78064712	12A2p6	cell line	sgMsh2	78064712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	176	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon6:c.T934G:p.Y312D	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999989	CTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	209	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	78688738	12A2p6	cell line	sgMsh2	78688738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	91	0	0	NA	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.A2352G:p.I784M	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.633213434	2	0.9700573	TAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	78688762	12A2p6	cell line	sgMsh2	78688762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	109	0	0	NA	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.T2376G:p.F792L	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	0.9998814	TTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	79620062	12A2p6	cell line	sgMsh2	79620062	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	19	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon52:c.T7985A:p.V2662D	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9550693	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	79697478	12A2p6	cell line	sgMsh2	79697478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	134	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon11:c.T2087C:p.L696P	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999811	CAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	80140847	12A2p6	cell line	sgMsh2	80140847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	325	0	0	NA	exonic	Senp6	synonymous SNV	"Senp6:NM_146003:exon20:c.T2907C:p.A969A,Senp6:NM_001311110:exon21:c.T2928C:p.A976A"	9qE1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.04E-09	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr9	82876810	12A2p6	cell line	sgMsh2	82876810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	75	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon37:c.T4286C:p.L1429P	9qE2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.766055413	1	0.7017906	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	82896115	12A2p6	cell line	sgMsh2	82896115	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	317	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon24:c.G2796C:p.E932D	9qE2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.07E-09	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	256	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	5.71E-09	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	84010263	12A2p6	cell line	sgMsh2	84010263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	215	0	0	NA	exonic	Bckdhb	nonsynonymous SNV	"Bckdhb:NM_001305935:exon7:c.T746C:p.V249A,Bckdhb:NM_199195:exon7:c.T542C:p.V181A"	9qE2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697206	TT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.379	25	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1955_1956del:p.K652Tfs*16,Ibtk:NM_001081282:exon26:c.3635_3636del:p.K1212Tfs*16"	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-2
M3_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	192	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999996	TAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	86570353	12A2p6	cell line	sgMsh2	86570353	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	81	0	0	NA	exonic	Pgm3	nonsynonymous SNV	"Pgm3:NM_001163746:exon2:c.G53T:p.G18V,Pgm3:NM_028352:exon2:c.G53T:p.G18V"	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9993067	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	88367345	12A2p6	cell line	sgMsh2	88367345	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	177	0	0	NA	exonic	Nt5e	nonsynonymous SNV	Nt5e:NM_011851:exon7:c.A1331G:p.Y444C	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999999	TAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	88401974	12A2p6	cell line	sgMsh2	88401974	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	160	0	0	NA	exonic	Snx14	nonsynonymous SNV	"Snx14:NM_001359958:exon15:c.T1394G:p.F465C,Snx14:NM_172926:exon15:c.T1394G:p.F465C"	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999968	AAA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	89240048	12A2p6	cell line	sgMsh2	89240048	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	296	0	0	NA	exonic	Mthfs	nonsynonymous SNV	"Mthfs:NM_001359993:exon3:c.C415A:p.L139I,Mthfs:NM_026829:exon3:c.C586A:p.L196I"	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	1.31E-09	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	89994768	12A2p6	cell line	sgMsh2	89994768	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	45	0	0	NA	exonic	Rasgrf1	nonsynonymous SNV	"Rasgrf1:NM_001357743:exon15:c.C2179T:p.P727S,Rasgrf1:NM_011245:exon15:c.C2185T:p.P729S"	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9920399	ACC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	90228938	12A2p6	cell line	sgMsh2	90228938	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	50	0	0	NA	exonic	Tbc1d2b	stopgain	Tbc1d2b:NM_194334:exon4:c.G847T:p.G283X	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9943212	CCT	nonsynonymous	AC	10	ACACACACAC	NA
M3_p20	chr9	90249800	12A2p6	cell line	sgMsh2	90249800	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	43	0	0	NA	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon2:c.G505T:p.D169Y	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9908908	TCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	90270491	12A2p6	cell line	sgMsh2	90270491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	17	0	0	NA	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon1:c.A221G:p.Q74R	9qE3.1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9488315	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	92352642	12A2p6	cell line	sgMsh2	92352642	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	153	0	0	NA	exonic	1700057G04Rik	frameshift deletion	1700057G04Rik:NM_001033184:exon5:c.429delA:p.I145Lfs*13	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M3_p20	chr9	94524392	12A2p6	cell line	sgMsh2	94524392	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	140	0	0	NA	exonic	Dipk2a	nonsynonymous SNV	Dipk2a:NM_001033145:exon2:c.A961C:p.N321H	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999874	CTT	nonsynonymous	TACT	9	TACTTACTT	NA
M3_p20	chr9	95500712	12A2p6	cell line	sgMsh2	95500712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	165	0	0	NA	exonic	U2surp	nonsynonymous SNV	"U2surp:NM_001114977:exon3:c.T198G:p.D66E,U2surp:NM_001357974:exon3:c.T198G:p.D66E"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999977	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	95511823	12A2p6	cell line	sgMsh2	95511823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	185	0	0	NA	exonic	U2surp	synonymous SNV	"U2surp:NM_001114977:exon1:c.T39C:p.S13S,U2surp:NM_001357974:exon1:c.T39C:p.S13S,U2surp:NM_001357975:exon1:c.T39C:p.S13S,U2surp:NM_026476:exon1:c.T39C:p.S13S"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999994	AAC	synonymous	NA	NA	NA	NA
M3_p20	chr9	95970797	12A2p6	cell line	sgMsh2	95970797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	191	0	0	NA	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon6:c.A696G:p.G232G,Xrn1:NM_011916:exon6:c.A696G:p.G232G"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999996	GAA	synonymous	A	8	AAAAAAAA	NA
M3_p20	chr9	95988981	12A2p6	cell line	sgMsh2	95988981	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	165	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon16:c.C1858A:p.P620T,Xrn1:NM_011916:exon16:c.C1858A:p.P620T"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.894469327	1	0.9991083	CCC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	157	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999996	GAA	nonsynonymous	T	5	TTTTT	NA
M3_p20	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Vardict	2	0.287	149	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M3_p20	chr9	96340286	12A2p6	cell line	sgMsh2	96340286	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	121	0	0	NA	exonic	Atp1b3	synonymous SNV	"Atp1b3:NM_001357212:exon3:c.C339A:p.S113S,Atp1b3:NM_007502:exon4:c.C447A:p.S149S,Atp1b3:NM_001357213:exon5:c.C276A:p.S92S"	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999543	AGG	synonymous	CAAG	8	CAAGCAAG	NA
M3_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	59	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.863472865	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr9	101211534	12A2p6	cell line	sgMsh2	101211534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	207	0	0	NA	exonic	Ppp2r3a	nonsynonymous SNV	Ppp2r3a:NM_001161362:exon2:c.T1589C:p.L530P	9qE4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	101984182	12A2p6	cell line	sgMsh2	101984182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	0	0	NA	exonic	Ephb1	synonymous SNV	Ephb1:NM_173447:exon10:c.C1782T:p.Y594Y	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.99994	TGT	synonymous	NA	NA	NA	NA
M3_p20	chr9	103277478	12A2p6	cell line	sgMsh2	103277478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	0	0	NA	exonic	1300017J02Rik	nonsynonymous SNV	1300017J02Rik:NM_027918:exon5:c.T613G:p.F205V	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.885613195	1	0.9514712	AAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	103489246	12A2p6	cell line	sgMsh2	103489246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	97	0	0	NA	exonic	Tmem108	synonymous SNV	"Tmem108:NM_001359465:exon4:c.C1545T:p.Y515Y,Tmem108:NM_178638:exon5:c.C1545T:p.Y515Y"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997663	AGT	synonymous	NA	NA	NA	NA
M3_p20	chr9	104011626	12A2p6	cell line	sgMsh2	104011626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	127	0	0	NA	exonic	Nphp3	nonsynonymous SNV	"Nphp3:NM_028721:exon6:c.T971C:p.M324T,Nphp3:NM_172460:exon6:c.T971C:p.M324T"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.509227587	2	0.9981901	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	104031988	12A2p6	cell line	sgMsh2	104031988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	85	0	0	NA	exonic	Nphp3	nonsynonymous SNV	Nphp3:NM_028721:exon17:c.T2396G:p.V799G	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9994717	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	104060299	12A2p6	cell line	sgMsh2	104060299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	636	0	0	NA	exonic	Uba5	synonymous SNV	Uba5:NM_025692:exon3:c.T210C:p.R70R	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
M3_p20	chr9	104084174	12A2p6	cell line	sgMsh2	104084174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	81	0	0	NA	exonic	Acad11	nonsynonymous SNV	Acad11:NM_175324:exon9:c.A1081G:p.T361A	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.801479941	1	0.8539409	TAC	nonsynonymous	CAC	9	CACCACCAC	NA
M3_p20	chr9	104176762	12A2p6	cell line	sgMsh2	104176762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	229	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon42:c.A4894G:p.M1632V,Dnajc13:NM_001359740:exon43:c.A4909G:p.M1637V"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	3.05E-08	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	105026705	12A2p6	cell line	sgMsh2	105026705	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	202	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon15:c.A1359T:p.Q453H,Cpne4:NM_001378996:exon15:c.A1329T:p.Q443H,Cpne4:NM_028719:exon15:c.A1305T:p.Q435H"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	105774746	12A2p6	cell line	sgMsh2	105774746	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	151	0	0	NA	exonic	Col6a6	frameshift deletion	"Col6a6:NM_001102607:exon8:c.3065delT:p.L1022Wfs*14,Col6a6:NM_172927:exon8:c.3065delT:p.L1022Wfs*16"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.947606118	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chr9	105782429	12A2p6	cell line	sgMsh2	105782429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	149	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon5:c.T1316C:p.L439P,Col6a6:NM_172927:exon5:c.T1316C:p.L439P"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999932	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	105783774	12A2p6	cell line	sgMsh2	105783774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	102	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon4:c.T1135C:p.S379P,Col6a6:NM_172927:exon4:c.T1135C:p.S379P"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.921037723	1	0.9973821	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	151	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.814764139	1	0.9208047	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	106019449	12A2p6	cell line	sgMsh2	106019449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	94	0	0	NA	exonic	Col6a4	synonymous SNV	Col6a4:NM_026763:exon29:c.T5166C:p.P1722P	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9997135	CAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	106198718	12A2p6	cell line	sgMsh2	106198718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	57	0	0	NA	exonic	Ppm1m	nonsynonymous SNV	Ppm1m:NM_198931:exon1:c.C10A:p.P4T	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9964644	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	106226140	12A2p6	cell line	sgMsh2	106226140	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	75	0	0	NA	exonic	Tlr9	nonsynonymous SNV	Tlr9:NM_031178:exon2:c.G2629A:p.D877N	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.898897393	1	0.986187	CGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	49	0	0	NA	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9939241	TAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	106473724	12A2p6	cell line	sgMsh2	106473724	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	76	0	0	NA	exonic	Parp3	nonsynonymous SNV	"Parp3:NM_001311150:exon7:c.G968T:p.R323M,Parp3:NM_145619:exon7:c.G953T:p.R318M"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9990262	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	107258437	12A2p6	cell line	sgMsh2	107258437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	0	0	NA	exonic	Mapkapk3	nonsynonymous SNV	Mapkapk3:NM_178907:exon8:c.C728A:p.P243H	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.999822	GGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	107572247	12A2p6	cell line	sgMsh2	107572247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	43	0	0	NA	exonic	Hyal2	nonsynonymous SNV	Hyal2:NM_010489:exon4:c.A1201G:p.T401A	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9908908	TAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chr9	107602013	12A2p6	cell line	sgMsh2	107602013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	117	0	0	NA	exonic	Sema3b	nonsynonymous SNV	"Sema3b:NM_009153:exon8:c.G757A:p.A253T,Sema3b:NM_001291539:exon9:c.G757A:p.A253T,Sema3b:NM_001042779:exon10:c.G757A:p.A253T,Sema3b:NM_001291537:exon10:c.G757A:p.A253T,Sema3b:NM_001291538:exon10:c.G757A:p.A253T"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.952034184	1	0.9995901	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	107705485	12A2p6	cell line	sgMsh2	107705485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	71	0	0	NA	exonic	Sema3f	nonsynonymous SNV	"Sema3f:NM_001311151:exon1:c.A58C:p.T20P,Sema3f:NM_001379496:exon2:c.A58C:p.T20P,Sema3f:NM_011349:exon2:c.A58C:p.T20P"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.947606118	1	0.9951273	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	107915316	12A2p6	cell line	sgMsh2	107915316	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.425	92	0	0	NA	exonic	Mst1r	frameshift deletion	"Mst1r:NM_001287261:exon2:c.185delT:p.I63Lfs*5,Mst1r:NM_009074:exon12:c.2888delT:p.I964Lfs*5"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M3_p20	chr9	107977039	12A2p6	cell line	sgMsh2	107977039	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	290	0	0	NA	exonic	Uba7	stopgain	Uba7:NM_023738:exon6:c.A667T:p.K223X	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.859044799	1	0.9994388	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	108068579	12A2p6	cell line	sgMsh2	108068579	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	67	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon13:c.C1007A:p.A336D,Rnf123:NM_032543:exon13:c.C1007A:p.A336D"	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.646497632	2	9.91E-05	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	120	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999511	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	108139239	12A2p6	cell line	sgMsh2	108139239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	194	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon2:c.A572G:p.H191R	9qF1	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	108463937	12A2p6	cell line	sgMsh2	108463937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	93	0	0	NA	exonic	Ccdc71	synonymous SNV	"Ccdc71:NM_001378930:exon2:c.A948G:p.K316K,Ccdc71:NM_001378931:exon2:c.A948G:p.K316K,Ccdc71:NM_133744:exon2:c.A948G:p.K316K"	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996933	AAG	synonymous	NA	NA	NA	NA
M3_p20	chr9	108481311	12A2p6	cell line	sgMsh2	108481311	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	79	0	0	NA	exonic	Lamb2	synonymous SNV	Lamb2:NM_008483:exon6:c.C546A:p.S182S	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9992058	CCT	synonymous	NA	NA	NA	NA
M3_p20	chr9	108492730	12A2p6	cell line	sgMsh2	108492730	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	55	0	0	NA	exonic	Usp19	nonsynonymous SNV	"Usp19:NM_001168371:exon2:c.G124A:p.V42M,Usp19:NM_001168372:exon2:c.G124A:p.V42M,Usp19:NM_001168373:exon2:c.G124A:p.V42M,Usp19:NM_027804:exon2:c.G124A:p.V42M,Usp19:NM_145407:exon2:c.G124A:p.V42M"	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.757199282	1	0.7173846	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	97	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M3_p20	chr9	108957078	12A2p6	cell line	sgMsh2	108957078	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	114	0	0	NA	exonic	Col7a1	synonymous SNV	Col7a1:NM_007738:exon12:c.G1452A:p.T484T	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9999264	CGC	synonymous	NA	NA	NA	NA
M3_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	135	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.9935813	GTG	synonymous	NA	NA	NA	NA
M3_p20	chr9	109848399	12A2p6	cell line	sgMsh2	109848399	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	73	0	0	NA	exonic	Camp	nonsynonymous SNV	Camp:NM_009921:exon3:c.G365A:p.C122Y	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.358673344	3	0.8464834	ACA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	258	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.996314844	1	6.70E-09	GCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	110547379	12A2p6	cell line	sgMsh2	110547379	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	90	0	0	NA	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T261A:p.N87K	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9996239	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	110551221	12A2p6	cell line	sgMsh2	110551221	A	-	Deletion	Mutect2;Vardict	2	0.271	62	0	0	NA	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon3:c.4103delA:p.N1370Mfs*2	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M3_p20	chr9	110622110	12A2p6	cell line	sgMsh2	110622110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A189G:p.T63T	9qF2	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.983030646	1	0.9999866	CTG	synonymous	NA	NA	NA	NA
M3_p20	chr9	112182812	12A2p6	cell line	sgMsh2	112182812	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	0	0	NA	exonic	Arpp21	stoploss	"Arpp21:NM_001177615:exon5:c.A267G:p.X89W,Arpp21:NM_001362008:exon5:c.A267G:p.X89W,Arpp21:NM_001362009:exon5:c.A267G:p.X89W,Arpp21:NM_001362000:exon6:c.A267G:p.X89W,Arpp21:NM_001362001:exon6:c.A267G:p.X89W,Arpp21:NM_001362002:exon6:c.A267G:p.X89W,Arpp21:NM_001362005:exon6:c.A267G:p.X89W,Arpp21:NM_001362006:exon6:c.A267G:p.X89W,Arpp21:NM_001362007:exon6:c.A267G:p.X89W,Arpp21:NM_028755:exon6:c.A267G:p.X89W,Arpp21:NM_001177620:exon7:c.A267G:p.X89W,Arpp21:NM_001362003:exon7:c.A267G:p.X89W,Arpp21:NM_001362004:exon7:c.A267G:p.X89W"	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.872328997	1	0.97604	CTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	118484791	12A2p6	cell line	sgMsh2	118484791	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	65	0	0	NA	exonic	Eomes	nonsynonymous SNV	"Eomes:NM_001164789:exon6:c.A1846T:p.I616F,Eomes:NM_010136:exon6:c.A1903T:p.I635F"	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9979448	GAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	118530314	12A2p6	cell line	sgMsh2	118530314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	269	0	0	NA	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon5:c.A581G:p.K194R	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	2.95E-09	AAG	nonsynonymous	A	5	AAAAA	NA
M3_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	111	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	0.606645038	2	0.9964547	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	119428424	12A2p6	cell line	sgMsh2	119428424	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	23	0	0	NA	exonic;splicing	Acvr2b;Acvr2b	nonsynonymous SNV	Acvr2b:NM_007397:exon4:c.G594T:p.Q198H	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9654147	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	119664827	12A2p6	cell line	sgMsh2	119664827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	207	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1412G:p.D471G,Scn10a:NM_009134:exon11:c.A1412G:p.D471G"	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	119664849	12A2p6	cell line	sgMsh2	119664849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	201	0	0	NA	exonic	Scn10a	nonsynonymous SNV	"Scn10a:NM_001205321:exon11:c.A1390G:p.R464G,Scn10a:NM_009134:exon11:c.A1390G:p.R464G"	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	64	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	2	1	1	0.9978005	CCC	synonymous	NA	NA	NA	NA
M3_p20	chr9	119958066	12A2p6	cell line	sgMsh2	119958066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	113	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon16:c.A2138G:p.E713G	9qF4	chr9-4330518-121688627	4	2	2	0.91	4.029540036	NA	1	1	1	0.9999213	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	141	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999883	GAT	synonymous	NA	NA	NA	NA
M3_p20	chr9	123640590	12A2p6	cell line	sgMsh2	123640590	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	122	0	0	NA	exonic	Slc6a20a	nonsynonymous SNV	Slc6a20a:NM_139142:exon9:c.T1441A:p.C481S	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	1	1	0.9999573	CAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chr9	124105949	12A2p6	cell line	sgMsh2	124105949	A	G	SNV	Mutect2;Vardict	2	0.036	316	0	0	NA	exonic	Ccr2	nonsynonymous SNV	Ccr2:NM_009915:exon3:c.A265G:p.M89V	9qF4	chr9-121689956-124127055	3	2	1	0.91	4.029540036	NA	1	0.159410375	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	7560150	12A2p6	cell line	sgMsh2	7560150	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	42	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon4:c.G1871C:p.S624T,Ppp1r3f:NM_138605:exon4:c.G1868C:p.S623T"	XqA1.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GCT	nonsynonymous	CTAGAG	13	CTAGAGCTAGAGC	NA
M3_p20	chrX	9063657	12A2p6	cell line	sgMsh2	9063657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.595	221	0	0	NA	exonic	Fthl17f	nonsynonymous SNV	Fthl17f:NM_001038697:exon1:c.A491G:p.N164S	XqA1.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	16724679	12A2p6	cell line	sgMsh2	16724679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	193	0	0	NA	exonic	Maob	nonsynonymous SNV	Maob:NM_172778:exon9:c.A1006G:p.T336A	XqA1.2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	23315137	12A2p6	cell line	sgMsh2	23315137	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	14	0	0	NA	exonic	Klhl13	nonsynonymous SNV	"Klhl13:NM_001381896:exon2:c.C43T:p.R15C,Klhl13:NM_001381891:exon3:c.C43T:p.R15C,Klhl13:NM_001381892:exon3:c.C43T:p.R15C,Klhl13:NM_026167:exon3:c.C43T:p.R15C,Klhl13:NM_001381895:exon4:c.C43T:p.R15C"	XqA2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	38631186	12A2p6	cell line	sgMsh2	38631186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	253	0	0	NA	exonic	C1galt1c1	nonsynonymous SNV	C1galt1c1:NM_021550:exon2:c.A932C:p.N311T	XqA3.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	41826130	12A2p6	cell line	sgMsh2	41826130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.74	39	0	0	NA	exonic	Thoc2	nonsynonymous SNV	Thoc2:NM_001033422:exon24:c.G2789A:p.R930H	XqA4	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	42578249	12A2p6	cell line	sgMsh2	42578249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon25:c.A4451G:p.N1484S	XqA4	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	44367716	12A2p6	cell line	sgMsh2	44367716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	52	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.A295G:p.T99A	XqA4	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	48876311	12A2p6	cell line	sgMsh2	48876311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	51	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon3:c.A295G:p.S99G	XqA5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	49683769	12A2p6	cell line	sgMsh2	49683769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	86	0	0	NA	exonic	Olfr1320	nonsynonymous SNV	Olfr1320:NM_207240:exon1:c.T266C:p.L89S	XqA5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	53737717	12A2p6	cell line	sgMsh2	53737717	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.439	103	0	0	NA	exonic	Ct55	frameshift deletion	Ct55:NM_029142:exon5:c.571delT:p.F192Sfs*38	XqA5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M3_p20	chrX	53751521	12A2p6	cell line	sgMsh2	53751521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.606	20	0	0	NA	exonic	1700013H16Rik	nonsynonymous SNV	1700013H16Rik:NM_001200013:exon2:c.A323C:p.Q108P	XqA5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	56362784	12A2p6	cell line	sgMsh2	56362784	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.749	32	0	0	NA	exonic	Zfp449	frameshift deletion	"Zfp449:NM_001359276:exon4:c.356delA:p.K121Nfs*7,Zfp449:NM_030139:exon5:c.716delA:p.K241Nfs*7"	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M3_p20	chrX	56547141	12A2p6	cell line	sgMsh2	56547141	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	115	0	0	NA	exonic	Gm648	nonsynonymous SNV	Gm648:NM_001033372:exon2:c.C107A:p.A36D	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	58031593	12A2p6	cell line	sgMsh2	58031593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	12	0	0	NA	exonic	Zic3	nonsynonymous SNV	Zic3:NM_009575:exon1:c.T413C:p.L138P	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	59250947	12A2p6	cell line	sgMsh2	59250947	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.382	48	0	0	NA	exonic	Fgf13	frameshift insertion	Fgf13:NM_001290414:exon3:c.68dupC:p.G24Wfs*27	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
M3_p20	chrX	60127042	12A2p6	cell line	sgMsh2	60127042	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.497	39	0	0	NA	exonic	Mcf2	frameshift insertion	"Mcf2:NM_001358998:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001358999:exon6:c.663dupA:p.L222Tfs*5,Mcf2:NM_001289730:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_133197:exon7:c.780dupA:p.L261Tfs*5,Mcf2:NM_001289731:exon10:c.1329dupA:p.L444Tfs*5"	XqA6	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGT	frameshift	T	5	TTTTT	1
M3_p20	chrX	64271265	12A2p6	cell line	sgMsh2	64271265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	106	0	0	NA	exonic	Slitrk4	nonsynonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1795G:p.T599A,Slitrk4:NM_178740:exon3:c.A1795G:p.T599A,Slitrk4:NM_001365111:exon4:c.A1795G:p.T599A"	XqA7.1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	69844125	12A2p6	cell line	sgMsh2	69844125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	57	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon12:c.G2769T:p.K923N	XqA7.2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	72257609	12A2p6	cell line	sgMsh2	72257609	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	49	0	0	NA	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon9:c.A2594C:p.K865T	XqA7.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	73353502	12A2p6	cell line	sgMsh2	73353502	-	G	Insertion	Strelka2;Vardict	2	0.3333	15	0	0	NA	exonic	Zfp275	frameshift insertion	"Zfp275:NM_001160229:exon5:c.254dupG:p.V87Gfs*4,Zfp275:NM_031494:exon6:c.620dupG:p.V209Gfs*4"	XqA7.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAG	frameshift	G	5	GGGGG	1
M3_p20	chrX	73769419	12A2p6	cell line	sgMsh2	73769419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	69	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon26:c.A4657G:p.T1553A	XqA7.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	C	5	CCCCC	NA
M3_p20	chrX	74331088	12A2p6	cell line	sgMsh2	74331088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	74	0	0	NA	exonic	Plxna3	synonymous SNV	"Plxna3:NM_001358129:exon2:c.T93C:p.D31D,Plxna3:NM_008883:exon2:c.T93C:p.D31D"	XqA7.3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
M3_p20	chrX	79302800	12A2p6	cell line	sgMsh2	79302800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	79	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon60:c.A8636G:p.Y2879C	XqB	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	79493800	12A2p6	cell line	sgMsh2	79493800	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	71	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon11:c.T1794C:p.D598D	XqB	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
M3_p20	chrX	86251227	12A2p6	cell line	sgMsh2	86251227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	290	0	0	NA	exonic	Mageb4	synonymous SNV	Mageb4:NM_001033492:exon3:c.C1195T:p.L399L	XqC1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGT	synonymous	NA	NA	NA	NA
M3_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	86	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	89930894	12A2p6	cell line	sgMsh2	89930894	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	96	0	0	NA	exonic	4930415L06Rik	nonsynonymous SNV	4930415L06Rik:NM_001033880:exon2:c.A1696C:p.M566L	XqC1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	142	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	94398127	12A2p6	cell line	sgMsh2	94398127	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	170	0	0	NA	exonic	Apoo	synonymous SNV	"Apoo:NM_001199337:exon7:c.T528G:p.T176T,Apoo:NM_001199338:exon7:c.T384G:p.T128T,Apoo:NM_001199339:exon7:c.T384G:p.T128T,Apoo:NM_026673:exon7:c.T486G:p.T162T"	XqC3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M3_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	18	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	72	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	101292889	12A2p6	cell line	sgMsh2	101292889	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.638	14	0	0	NA	exonic	Med12	frameshift deletion	Med12:NM_021521:exon37:c.5374delA:p.K1793Nfs*23	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M3_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.537	68	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M3_p20	chrX	103708008	12A2p6	cell line	sgMsh2	103708008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.538	101	0	0	NA	exonic	Slc16a2	nonsynonymous SNV	Slc16a2:NM_009197:exon3:c.A791G:p.K264R	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	103	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M3_p20	chrX	106156739	12A2p6	cell line	sgMsh2	106156739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.56	153	0	0	NA	exonic	Tlr13	frameshift deletion	Tlr13:NM_205820:exon3:c.81delT:p.F30Sfs*3	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M3_p20	chrX	108778381	12A2p6	cell line	sgMsh2	108778381	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	109	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon18:c.A1910T:p.Q637L	XqD	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	112515199	12A2p6	cell line	sgMsh2	112515199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	199	0	0	NA	exonic	2010106E10Rik	nonsynonymous SNV	"2010106E10Rik:NM_001168590:exon4:c.A382G:p.S128G,2010106E10Rik:NM_026333:exon4:c.A382G:p.S128G"	XqE1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	120401646	12A2p6	cell line	sgMsh2	120401646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	105	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.T2785C:p.F929L,Pcdh11x:NM_001271810:exon3:c.T2785C:p.F929L"	XqE2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	TTT	nonsynonymous	CTA	8	CTACTACT	NA
M3_p20	chrX	122395485	12A2p6	cell line	sgMsh2	122395485	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	98	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1535T:p.D512V	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	126814960	12A2p6	cell line	sgMsh2	126814960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.559	89	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.G521A:p.R174K	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	127060561	12A2p6	cell line	sgMsh2	127060561	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	68	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.G368T:p.G123V	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	127063090	12A2p6	cell line	sgMsh2	127063090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	89	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.T2897C:p.L966P	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.57	143	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	134721417	12A2p6	cell line	sgMsh2	134721417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	38	0	0	NA	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.T1267C:p.L423L,Armcx1:NM_001166379:exon4:c.T1267C:p.L423L,Armcx1:NM_001166380:exon5:c.T1267C:p.L423L,Armcx1:NM_001166377:exon6:c.T1267C:p.L423L,Armcx1:NM_030066:exon6:c.T1267C:p.L423L"	XqE3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M3_p20	chrX	135659037	12A2p6	cell line	sgMsh2	135659037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	92	0	0	NA	exonic	Tcp11x2	synonymous SNV	Tcp11x2:NM_027952:exon7:c.T897C:p.L299L	XqF1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M3_p20	chrX	140028155	12A2p6	cell line	sgMsh2	140028155	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.56	175	0	0	NA	exonic	Nup62cl	nonsynonymous SNV	Nup62cl:NM_001081668:exon4:c.A346T:p.I116F	XqF1	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	141724864	12A2p6	cell line	sgMsh2	141724864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.631	30	0	0	NA	exonic	Irs4	nonsynonymous SNV	Irs4:NM_010572:exon1:c.A335G:p.Y112C	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	143101201	12A2p6	cell line	sgMsh2	143101201	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	75	0	0	NA	exonic	Rtl9	synonymous SNV	Rtl9:NM_001040434:exon1:c.C1608A:p.T536T	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M3_p20	chrX	143735268	12A2p6	cell line	sgMsh2	143735268	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	103	0	0	NA	exonic	Pak3	synonymous SNV	"Pak3:NM_001195047:exon7:c.C675G:p.R225R,Pak3:NM_008778:exon7:c.C612G:p.R204R,Pak3:NM_001195046:exon8:c.C720G:p.R240R,Pak3:NM_001195048:exon8:c.C657G:p.R219R,Pak3:NM_001195049:exon10:c.C612G:p.R204R"	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M3_p20	chrX	144481235	12A2p6	cell line	sgMsh2	144481235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.568	58	0	0	NA	exonic	Trpc5	nonsynonymous SNV	Trpc5:NM_009428:exon3:c.A625G:p.I209V	XqF2	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	151233083	12A2p6	cell line	sgMsh2	151233083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	92	0	0	NA	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon7:c.T1534C:p.Y512H,Wnk3:NM_001271679:exon7:c.T1534C:p.Y512H"	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	93	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	152061792	12A2p6	cell line	sgMsh2	152061792	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.456	112	0	0	NA	exonic	Smc1a	frameshift deletion	Smc1a:NM_019710:exon25:c.3685delA:p.N1229Tfs*46	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CAA	frameshift	CCAACC	16	CCAACCCCAACCCCAA	-1
M3_p20	chrX	152339886	12A2p6	cell line	sgMsh2	152339886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	67	0	0	NA	exonic	Tspyl2	synonymous SNV	"Tspyl2:NM_001358369:exon4:c.C1098A:p.L366L,Tspyl2:NM_029836:exon4:c.C1098A:p.L366L"	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GGA	synonymous	NA	NA	NA	NA
M3_p20	chrX	154110327	12A2p6	cell line	sgMsh2	154110327	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.578	145	0	0	NA	exonic	Samt1;Samt1b;Samt1d	stopgain	"Samt1b:NM_001201358:exon3:c.G140A:p.W47X,Samt1d:NM_001243017:exon3:c.G140A:p.W47X,Samt1:NM_030036:exon3:c.G140A:p.W47X"	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	155623097	12A2p6	cell line	sgMsh2	155623097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	94	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon1:c.A214G:p.S72G	XqF3	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	164422992	12A2p6	cell line	sgMsh2	164422992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	54	0	0	NA	exonic	Piga	nonsynonymous SNV	Piga:NM_011081:exon2:c.T347C:p.I116T	XqF5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	166400997	12A2p6	cell line	sgMsh2	166400997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	177	0	0	NA	exonic	Ofd1	nonsynonymous SNV	Ofd1:NM_177429:exon19:c.A2564G:p.H855R	XqF5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M3_p20	chrX	167479139	12A2p6	cell line	sgMsh2	167479139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	27	0	0	NA	exonic	Frmpd4	nonsynonymous SNV	"Frmpd4:NM_001290428:exon15:c.A1873G:p.S625G,Frmpd4:NM_001359072:exon15:c.A1984G:p.S662G,Frmpd4:NM_001368936:exon15:c.A1993G:p.S665G,Frmpd4:NM_001290427:exon16:c.A1969G:p.S657G,Frmpd4:NM_001369234:exon17:c.A2047G:p.S683G,Frmpd4:NM_001033330:exon18:c.A1969G:p.S657G"	XqF5	NA	NA	NA	NA	0.91	4.029540036	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	214	32	0.14953271	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.995264937	1	0.9795546	TGG	synonymous	NA	NA	NA	NA
M4	chr1	4867506	12A2p6	cell line	sgMsh2	4867506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	263	24	3	0.125	exonic	Tcea1	nonsynonymous SNV	"Tcea1:NM_001159750:exon2:c.A100G:p.I34V,Tcea1:NM_001159751:exon2:c.A133G:p.I45V,Tcea1:NM_011541:exon2:c.A100G:p.I34V"	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	5602536	12A2p6	cell line	sgMsh2	5602536	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	150	0	0	NA	exonic	Oprk1	nonsynonymous SNV	"Oprk1:NM_001204371:exon4:c.C895A:p.L299M,Oprk1:NM_011011:exon4:c.C895A:p.L299M"	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999701	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	5917255	12A2p6	cell line	sgMsh2	5917255	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	45	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.C39A:p.N13K	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.703320555	1	0.5126907	CGT	nonsynonymous	NA	NA	NA	NA
M4	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	49	62	8	0.129032258	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9879366	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr1	8583327	12A2p6	cell line	sgMsh2	8583327	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	181	0	0	NA	exonic	Sntg1	nonsynonymous SNV	"Sntg1:NM_001290393:exon13:c.G688A:p.A230T,Sntg1:NM_001290390:exon14:c.G685A:p.A229T,Sntg1:NM_027671:exon14:c.G688A:p.A230T"	1qA1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999953	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr1	9546354	12A2p6	cell line	sgMsh2	9546354	C	T	SNV	Mutect2;Vardict	2	0.059	141	147	0	0	exonic	Rrs1	synonymous SNV	Rrs1:NM_021511:exon1:c.C831T:p.S277S	1qA2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.260980583	3	0.9999893	GCA	synonymous	NA	NA	NA	NA
M4	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	161	11	2	0.181818182	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.884679944	1	0.995289	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	240	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.636969559	2	0.9999839	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M4	chr1	13152885	12A2p6	cell line	sgMsh2	13152885	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	117	37	5	0.135135135	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon16:c.C3308A:p.P1103Q,Ncoa2:NM_008678:exon17:c.C3515A:p.P1172Q"	1qA3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.884679944	1	0.9865724	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr1	17749529	12A2p6	cell line	sgMsh2	17749529	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	189	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon7:c.C750T:p.T250T,Crispld1:NM_031402:exon7:c.C750T:p.T250T"	1qA3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.619275961	2	0.9998943	CCC	synonymous	NA	NA	NA	NA
M4	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	57	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.575041963	2	0.9085869	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	64	1	1	1	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.650239759	2	0.829569	TGC	synonymous	NA	NA	NA	NA
M4	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	111	102	15	0.147058824	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.94218414	1	0.9978049	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	25559852	12A2p6	cell line	sgMsh2	25559852	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	118	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon3:c.G771T:p.M257I	1qA5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.592735562	2	0.9960941	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr1	25826149	12A2p6	cell line	sgMsh2	25826149	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	0	0	NA	exonic	Adgrb3	synonymous SNV	Adgrb3:NM_175642:exon2:c.G612A:p.E204E	1qA5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.964301139	1	0.997967	ACT	synonymous	NA	NA	NA	NA
M4	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	130	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.818328948	1	0.8756251	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr1	26683676	12A2p6	cell line	sgMsh2	26683676	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	131	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C2422T:p.L808F	1qA5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999074	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	45	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	3	1	1	0.9847424	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	204	37	0	0	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.871409745	1	0.9961327	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	34188543	12A2p6	cell line	sgMsh2	34188543	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	157	10	2	0.2	exonic	Dst	nonsynonymous SNV	"Dst:NM_134448:exon36:c.G5216T:p.R1739I,Dst:NM_001276764:exon39:c.G5750T:p.R1917I"	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.964301139	1	0.9998893	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr1	34252970	12A2p6	cell line	sgMsh2	34252970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	100	110	23	0.209090909	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon59:c.A10873G:p.T3625A,Dst:NM_134448:exon64:c.A16915G:p.T5639A,Dst:NM_001276764:exon68:c.A17776G:p.T5926A"	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.636969559	2	0.9762126	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	159	151	59	0.390728477	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999825	TAG	synonymous	NA	NA	NA	NA
M4	chr1	36472070	12A2p6	cell line	sgMsh2	36472070	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	94	63	19	0.301587302	exonic	Cnnm4	frameshift deletion	Cnnm4:NM_033570:exon1:c.378delG:p.M128Cfs*1	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	56	19	8	0.421052632	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.992015	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	70	5	0	0	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.889103343	1	0.9631763	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr1	38053941	12A2p6	cell line	sgMsh2	38053941	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	181	29	10	0.344827586	exonic	Rev1	nonsynonymous SNV	"Rev1:NM_019570:exon21:c.G3434T:p.G1145V,Rev1:NM_001359287:exon22:c.G1967T:p.G656V,Rev1:NM_001359288:exon24:c.G1871T:p.G624V"	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999953	GCC	nonsynonymous	CTGGC	10	CTGGCCTGGC	NA
M4	chr1	38821218	12A2p6	cell line	sgMsh2	38821218	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	123	0	0	NA	exonic	Lonrf2	nonsynonymous SNV	Lonrf2:NM_001029878:exon2:c.A706G:p.T236A	1qB	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9998509	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	104	1	0	0	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.809482149	1	0.8285712	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	192	151	27	0.178807947	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.858139545	1	0.9893068	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	46140074	12A2p6	cell line	sgMsh2	46140074	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	449	2	0	0	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon18:c.G2774A:p.S925N	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.760824752	2	0.9923543	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr1	46680760	12A2p6	cell line	sgMsh2	46680760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	259	0	0	NA	exonic	Dnah7c	synonymous SNV	Dnah7c:NM_001310335:exon44:c.T8370C:p.A2790A	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.94218414	1	0.9999954	CTG	synonymous	NA	NA	NA	NA
M4	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	37	66	6	0.090909091	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9756596	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	179	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.902373543	1	0.9988432	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	200	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.840445947	1	0.9724503	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	244	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr1	54988042	12A2p6	cell line	sgMsh2	54988042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	110	572	105	0.183566434	exonic	Sf3b1	nonsynonymous SNV	Sf3b1:NM_031179:exon24:c.A3653G:p.N1218S	1qC1.2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9996768	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr1	55695997	12A2p6	cell line	sgMsh2	55695997	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	129	1	0	0	exonic	Plcl1	stopgain	Plcl1:NM_001114663:exon2:c.G496T:p.E166X	1qC1.2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9998957	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	113	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.818328948	1	0.8688761	CAG	synonymous	NA	NA	NA	NA
M4	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	58	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9929049	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M4	chr1	58434347	12A2p6	cell line	sgMsh2	58434347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	218	136	30	0.220588235	exonic	Ppil3	nonsynonymous SNV	"Ppil3:NM_001285826:exon6:c.T343C:p.Y115H,Ppil3:NM_001285827:exon6:c.T343C:p.Y115H,Ppil3:NM_027351:exon6:c.T343C:p.Y115H,Ppil3:NM_027374:exon6:c.T343C:p.Y115H"	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	78	17	4	0.235294118	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.641392959	2	0.9215569	ATG	synonymous	NA	NA	NA	NA
M4	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	98	607	110	0.18121911	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.981994738	1	0.9988638	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	123	100	16	0.16	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.94660754	1	0.9988736	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	139	36	5	0.138888889	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.78294175	1	0.6149905	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	139	3	1	0.333333333	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.712167355	2	0.928401	CTG	nonsynonymous	G	5	GGGGG	NA
M4	chr1	66555061	12A2p6	cell line	sgMsh2	66555061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	222	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon22:c.A3604G:p.I1202V,Unc80:NM_001368825:exon22:c.A3604G:p.I1202V,Unc80:NM_175510:exon22:c.A3598G:p.I1200V"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.862562945	1	0.9950567	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	69107719	12A2p6	cell line	sgMsh2	69107719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	23	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon1:c.T38C:p.L13P	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.945642	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	69873175	12A2p6	cell line	sgMsh2	69873175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	176	0	0	NA	exonic	Spag16	nonsynonymous SNV	"Spag16:NM_001271533:exon7:c.T668C:p.V223A,Spag16:NM_029160:exon7:c.T668C:p.V223A"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999936	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	69996888	12A2p6	cell line	sgMsh2	69996888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	180	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon2:c.T87G:p.L29L,Spag16:NM_029160:exon11:c.T1074G:p.L358L"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.999995	TTC	synonymous	NA	NA	NA	NA
M4	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	83	2	0	0	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.738707753	2	0.5625977	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	72	25	0.347222222	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.707743955	2	0.87638	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	113	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.818328948	1	0.8688761	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	74594652	12A2p6	cell line	sgMsh2	74594652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	71	67	12	0.179104478	exonic	Rnf25	nonsynonymous SNV	"Rnf25:NM_001305230:exon9:c.G697A:p.E233K,Rnf25:NM_021313:exon9:c.G700A:p.E234K"	1qC3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.884679944	1	0.960559	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	147	42	3	0.071428571	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.734284353	2	0.8574076	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	178	17	5	0.294117647	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.889103343	1	0.9975367	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	47	1	0	0	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9864319	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	75183017	12A2p6	cell line	sgMsh2	75183017	C	A	SNV	Mutect2;Vardict	2	0.133	35	42	5	0.119047619	exonic	Atg9a	nonsynonymous SNV	"Atg9a:NM_001003917:exon14:c.G2245T:p.G749C,Atg9a:NM_001288612:exon14:c.G2245T:p.G749C,Atg9a:NM_001288613:exon14:c.G1591T:p.G531C"	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.588312163	2	0.6858872	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr1	75216050	12A2p6	cell line	sgMsh2	75216050	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	230	462	86	0.186147186	exonic	Tuba4a	nonsynonymous SNV	"Tuba4a:NM_001313724:exon3:c.C460A:p.P154T,Tuba4a:NM_001313723:exon4:c.C313A:p.P105T,Tuba4a:NM_009447:exon4:c.C919A:p.P307T"	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999997	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	78	595	90	0.151260504	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.694473756	2	0.7700679	TAG	synonymous	NA	NA	NA	NA
M4	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	42	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.844869346	1	0.8787905	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	139	229	4	0.017467249	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.79178855	1	0.6999755	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	83	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.889103343	1	0.973244	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	100	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	122	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.858139545	1	0.968306	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	88228309	12A2p6	cell line	sgMsh2	88228309	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	631	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C162T:p.D54D	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.252133784	3	1	ACA	synonymous	NA	NA	NA	NA
M4	chr1	88230773	12A2p6	cell line	sgMsh2	88230773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	377	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon5:c.C541A:p.L181M	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.243286985	3	1	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	279	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.141548791	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	88255241	12A2p6	cell line	sgMsh2	88255241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	185	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3809C:p.L1270P	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.265403983	3	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	90810688	12A2p6	cell line	sgMsh2	90810688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	115	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon5:c.T1287C:p.G429G,Col6a3:NM_001243008:exon8:c.T3108C:p.G1036G"	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.924490541	1	0.9965273	CAC	synonymous	NA	NA	NA	NA
M4	chr1	91309849	12A2p6	cell line	sgMsh2	91309849	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	94	43	0	0	exonic	Scly	frameshift deletion	Scly:NM_016717:exon7:c.794delC:p.L267Cfs*22	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.79178855	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	28	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9590962	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M4	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	70	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.990841537	1	0.9957565	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	176	89	1	0.011235955	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999936	AAG	synonymous	NA	NA	NA	NA
M4	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	110	29	12	0.413793103	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.93776074	1	0.9973425	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	131	28	3	0.107142857	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.915643742	1	0.9972203	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	88	120	21	0.175	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.915643742	1	0.9883444	TAG	synonymous	NA	NA	NA	NA
M4	chr1	94024473	12A2p6	cell line	sgMsh2	94024473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	0	0	NA	exonic	Neu4	nonsynonymous SNV	"Neu4:NM_173772:exon4:c.T494C:p.V165A,Neu4:NM_001310769:exon5:c.T563C:p.V188A"	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.849292746	1	0.9643105	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	74	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.95103094	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4	chr1	106712619	12A2p6	cell line	sgMsh2	106712619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	64	6	1	0.166666667	exonic	Bcl2	nonsynonymous SNV	"Bcl2:NM_009741:exon1:c.C262T:p.P88S,Bcl2:NM_177410:exon1:c.C262T:p.P88S"	1qE2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.796211949	1	0.782499	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr1	106779038	12A2p6	cell line	sgMsh2	106779038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	307	310	19	0.061290323	exonic	Vps4b	nonsynonymous SNV	Vps4b:NM_009190:exon8:c.A803G:p.D268G	1qE2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.840445947	1	0.9907532	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr1	106995906	12A2p6	cell line	sgMsh2	106995906	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	134	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon4:c.C340A:p.L114I	1qE2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999225	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	111861881	12A2p6	cell line	sgMsh2	111861881	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.311	139	0	0	NA	exonic	Dsel	frameshift insertion	Dsel:NM_001081316:exon2:c.922dupT:p.W308Lfs*22	1qE2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	NA	NA	CCA	frameshift	A	5	AAAAA	1
M4	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.447	308	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M4	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	31	5	0.161290323	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.765248151	2	6.42E-09	GTT	synonymous	NA	NA	NA	NA
M4	chr1	120341171	12A2p6	cell line	sgMsh2	120341171	C	T	SNV	Mutect2;MuSe;Vardict	3	0.251	17	0	0	NA	exonic	C1ql2	synonymous SNV	C1ql2:NM_207233:exon1:c.C54T:p.P18P	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.923869	CCG	synonymous	C	5	CCCCC	NA
M4	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	130	61	23	0.37704918	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999017	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	123336844	12A2p6	cell line	sgMsh2	123336844	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	177	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon25:c.G2248A:p.G750R	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.93776074	1	0.9998217	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr1	123341158	12A2p6	cell line	sgMsh2	123341158	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	74	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon24:c.A2141C:p.N714T	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.552924965	2	0.9584141	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.368	167	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999891	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	144	136	19	0.139705882	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.738707753	2	0.8221091	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	144	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.924490541	1	0.9987842	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	252	49	0.194444444	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9994797	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	199	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.840445947	1	0.9721709	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	236	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.78736515	1	0.5195199	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	53	22	5	0.227272727	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.694473756	2	0.5846335	GTA	synonymous	NA	NA	NA	NA
M4	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	71	81	12	0.148148148	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.712167355	2	0.6410829	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M4	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	136	34	15	0.441176471	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999312	GGC	synonymous	NA	NA	NA	NA
M4	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	163	97	26	0.268041237	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.999688336	1	0.999986	CTG	synonymous	NA	NA	NA	NA
M4	chr1	132527752	12A2p6	cell line	sgMsh2	132527752	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	65	0	0	NA	exonic	Cntn2	frameshift deletion	Cntn2:NM_177129:exon7:c.746delC:p.P249Qfs*83	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.959877739	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	93	338	132	0.390532544	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9991113	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	133284968	12A2p6	cell line	sgMsh2	133284968	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	113	112	28	0.25	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon14:c.G2069A:p.G690D,Plekha6:NM_182930:exon17:c.G2231A:p.G744D"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.858139545	1	0.9636302	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr1	133384551	12A2p6	cell line	sgMsh2	133384551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	63	94	52	0.553191489	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon13:c.A1474G:p.T492A	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.698897156	2	0.6464228	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	134144060	12A2p6	cell line	sgMsh2	134144060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	148	0	0	NA	exonic	Chit1	nonsynonymous SNV	"Chit1:NM_001284524:exon5:c.A307G:p.T103A,Chit1:NM_001284525:exon5:c.A307G:p.T103A,Chit1:NM_027979:exon5:c.A307G:p.T103A"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.690050356	2	0.9788139	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	134203378	12A2p6	cell line	sgMsh2	134203378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	126	5	0	0	exonic	Adora1	nonsynonymous SNV	"Adora1:NM_001008533:exon2:c.T554C:p.F185S,Adora1:NM_001291928:exon2:c.T284C:p.F95S,Adora1:NM_001291930:exon2:c.T128C:p.F43S,Adora1:NM_001039510:exon3:c.T554C:p.F185S,Adora1:NM_001282945:exon3:c.T554C:p.F185S"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.756401352	2	0.6145538	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr1	134348070	12A2p6	cell line	sgMsh2	134348070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	139	296	59	0.199324324	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon8:c.T1064C:p.V355A,Tmem183a:NM_020588:exon8:c.T1067C:p.V356A"	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.694473756	2	0.965108	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	135455138	12A2p6	cell line	sgMsh2	135455138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	61	50	22	0.44	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon17:c.A3835G:p.T1279A	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9940585	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.187	151	78	14	0.179487179	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.827175747	1	0.919681	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.187	151	75	15	0.2	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.827175747	1	0.919681	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	136487104	12A2p6	cell line	sgMsh2	136487104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	100	18	7	0.388888889	exonic	Kif14	nonsynonymous SNV	Kif14:NM_001287179:exon11:c.A2327G:p.Y776C	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	1	0.9910445	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	136521193	12A2p6	cell line	sgMsh2	136521193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	59	14	2	0.142857143	exonic	Kif14	nonsynonymous SNV	Kif14:NM_001287179:exon26:c.T4330C:p.F1444L	1qE4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.659086558	2	0.7658154	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	209	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.743131153	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	219	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.880256544	1	0.9984172	TAT	synonymous	NA	NA	NA	NA
M4	chr1	140099038	12A2p6	cell line	sgMsh2	140099038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	89	0	0	NA	exonic	Cfh	nonsynonymous SNV	Cfh:NM_009888:exon20:c.T3211C:p.C1071R	1qF	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.866986345	1	0.9584993	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	143770645	12A2p6	cell line	sgMsh2	143770645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	118	143	23	0.160839161	exonic	Ro60	nonsynonymous SNV	Ro60:NM_013835:exon2:c.A361G:p.I121V	1qF	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.672356757	2	0.9675829	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	132	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999127	TTT	synonymous	NA	NA	NA	NA
M4	chr1	150701960	12A2p6	cell line	sgMsh2	150701960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	103	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon39:c.A6049G:p.S2017G	1qG1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.813905548	1	0.8474914	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	159	204	33	0.161764706	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	1	0.9986485	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	76	22	0.289473684	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.933337341	1	0.9998578	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	187	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9999967	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	79	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	1	1	0.9979572	AAG	nonsynonymous	A	5	AAAAA	NA
M4	chr1	157230121	12A2p6	cell line	sgMsh2	157230121	-	G	Insertion	Strelka2;Vardict	2	0.0833	60	18	0	0	exonic	Rasal2	frameshift insertion	Rasal2:NM_177644:exon4:c.478dupC:p.R160Pfs*25	1qH1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.368469197	NA	NA	GCG	frameshift	G	5	GGGGG	1
M4	chr1	157465029	12A2p6	cell line	sgMsh2	157465029	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	196	9	0	0	exonic	Cryzl2	nonsynonymous SNV	"Cryzl2:NM_001033284:exon5:c.A380C:p.K127T,Cryzl2:NM_001356418:exon5:c.A380C:p.K127T,Cryzl2:NM_001356419:exon5:c.A380C:p.K127T"	1qH1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.836022547	1	0.9628603	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	158246682	12A2p6	cell line	sgMsh2	158246682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	158	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon8:c.A1868G:p.Q623R	1qH1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.703320555	2	0.9719881	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	202	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999986	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	161864023	12A2p6	cell line	sgMsh2	161864023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	110	31	8	0.258064516	exonic	Suco	nonsynonymous SNV	"Suco:NM_001357401:exon2:c.T65C:p.L22P,Suco:NM_001357402:exon2:c.T65C:p.L22P,Suco:NM_172645:exon2:c.T65C:p.L22P"	1qH2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9996768	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	162231725	12A2p6	cell line	sgMsh2	162231725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	94	0	0	NA	exonic	Dnm3	nonsynonymous SNV	"Dnm3:NM_001038619:exon14:c.A1588G:p.M530V,Dnm3:NM_172646:exon14:c.A1588G:p.M530V"	1qH2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.539654766	2	0.9657092	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	145	45	14	0.311111111	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999598	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	142	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999519	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	165551108	12A2p6	cell line	sgMsh2	165551108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	101	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon20:c.T977C:p.M326T,Adcy10:NM_173029:exon20:c.T2465C:p.M822T"	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9994478	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	93	32	22	0.6875	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9991113	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	118	12	1	0.083333333	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.920067141	1	0.9963427	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	62	280	29	0.103571429	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.747554552	1	0.5883514	CTG	synonymous	NA	NA	NA	NA
M4	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	74	349	63	0.180515759	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.884679944	1	0.9631986	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	140	206	54	0.262135922	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.659086558	2	0.9924426	ATA	synonymous	NA	NA	NA	NA
M4	chr1	170681063	12A2p6	cell line	sgMsh2	170681063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	123	46	6	0.130434783	exonic	Olfml2b	nonsynonymous SNV	Olfml2b:NM_177068:exon7:c.A1489C:p.I497L	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.973147938	1	0.9995877	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	192	57	6	0.105263158	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	1	0.9995323	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr1	171403931	12A2p6	cell line	sgMsh2	171403931	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	197	0	0	NA	exonic	Arhgap30	nonsynonymous SNV	Arhgap30:NM_001005508:exon7:c.C815A:p.T272N	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999982	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr1	172113100	12A2p6	cell line	sgMsh2	172113100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	127	476	77	0.161764706	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon20:c.G2052T:p.Q684H	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9998825	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.182	81	109	19	0.174311927	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.805058749	1	0.809362	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	51	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9892762	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	173130301	12A2p6	cell line	sgMsh2	173130301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	201	0	0	NA	exonic	Olfr1408	synonymous SNV	Olfr1408:NM_146764:exon2:c.T915C:p.C305C	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.765248151	2	0.7469269	TAC	synonymous	NA	NA	NA	NA
M4	chr1	173183735	12A2p6	cell line	sgMsh2	173183735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	250	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G698A:p.R233Q	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.933337341	1	0.9999868	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	284	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.897950143	1	0.9999226	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Strelka2;Vardict	2	0.432	331	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	206	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.340601778	3	0.999987	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	267	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.858139545	1	0.9967131	ATG	synonymous	NA	NA	NA	NA
M4	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	246	84	0	0	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.415799574	3	0.9985938	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr1	174181066	12A2p6	cell line	sgMsh2	174181066	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	70	0	0	NA	exonic	Spta1	nonsynonymous SNV	Spta1:NM_011465:exon6:c.T735A:p.D245E	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.601582362	2	0.9420997	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr1	174502907	12A2p6	cell line	sgMsh2	174502907	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.148	39	0	0	NA	exonic	Fmn2	frameshift insertion	Fmn2:NM_019445:exon1:c.863dupC:p.S290Lfs*35	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.654663158	NA	NA	CGC	frameshift	C	5	CCCCC	1
M4	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.144	114	254	44	0.173228346	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.636969559	2	0.9884174	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.508	70	46	16	0.347826087	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	3	1	1	0.9965144	ATA	synonymous	NA	NA	NA	NA
M4	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	111	24	0.216216216	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.893526743	1	0.9875713	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	110	134	48	0.358208955	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9996768	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	61	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.911220342	1	0.9692735	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.1905	126	86	5	0.058139535	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.842657646	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M4	chr1	181162206	12A2p6	cell line	sgMsh2	181162206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	235	357	69	0.193277311	exonic	Cnih4	nonsynonymous SNV	Cnih4:NM_030131:exon4:c.A383G:p.Y128C	1qH4	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.734284353	2	0.9772203	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	50	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9886259	CCT	synonymous	NA	NA	NA	NA
M4	chr1	182747339	12A2p6	cell line	sgMsh2	182747339	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	127	0	0	NA	exonic	Ccdc185	nonsynonymous SNV	Ccdc185:NM_001033547:exon1:c.C1784T:p.A595V	1qH5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.654663158	2	0.9885317	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr1	184944834	12A2p6	cell line	sgMsh2	184944834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	205	0	0	NA	exonic	Mark1	nonsynonymous SNV	"Mark1:NM_001378876:exon2:c.A218G:p.K73R,Mark1:NM_145515:exon2:c.A218G:p.K73R"	1qH5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.769671551	2	0.7014232	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	185283917	12A2p6	cell line	sgMsh2	185283917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	117	57	13	0.228070175	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon35:c.A4085G:p.E1362G	1qH5	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9997869	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr1	188553281	12A2p6	cell line	sgMsh2	188553281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	41	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon29:c.A6013G:p.T2005A	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9807187	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	152	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9999735	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr1	189295644	12A2p6	cell line	sgMsh2	189295644	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	95	0	0	NA	exonic	Kcnk2	stopgain	"Kcnk2:NM_001159850:exon3:c.G425A:p.W142X,Kcnk2:NM_001281847:exon3:c.G389A:p.W130X,Kcnk2:NM_010607:exon3:c.G380A:p.W127X"	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.853716146	1	0.9459663	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr1	189659952	12A2p6	cell line	sgMsh2	189659952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	111	71	16	0.225352113	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon12:c.A1682G:p.N561S	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.77851835	1	0.6277437	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	189899870	12A2p6	cell line	sgMsh2	189899870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	106	115	29	0.252173913	exonic	Smyd2	nonsynonymous SNV	Smyd2:NM_026796:exon3:c.A296G:p.N99S	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.920067141	1	0.9944505	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr1	191561520	12A2p6	cell line	sgMsh2	191561520	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	116	124	30	0.241935484	exonic	Dtl	nonsynonymous SNV	"Dtl:NM_029766:exon7:c.G544T:p.V182L,Dtl:NM_001305233:exon8:c.G172T:p.V58L"	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	1	0.676780157	2	0.9591301	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	128	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	5	3	2	0.99	4.379165722	NA	2	1	1	0.9998893	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	51	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.592735562	2	0.8517853	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	47	66	11	0.166666667	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9864319	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	45	7	0.155555556	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9915981	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	133	4	1	0.25	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	167	34	4	0.117647059	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9996648	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	158	31	7	0.225806452	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	176	41	9	0.219512195	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999936	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	11457275	12A2p6	cell line	sgMsh2	11457275	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	53	0	0	NA	exonic	Epm2a	nonsynonymous SNV	Epm2a:NM_010146:exon4:c.T851A:p.I284N	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	96	23	9	0.391304348	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9978661	CGC	synonymous	NA	NA	NA	NA
M4	chr10	13182312	12A2p6	cell line	sgMsh2	13182312	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	104	65	12	0.184615385	exonic	Ltv1	synonymous SNV	Ltv1:NM_181470:exon6:c.A747G:p.E249E	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	GTT	synonymous	NA	NA	NA	NA
M4	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	82	42	16	0.380952381	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	0.7307361	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	80	39	10	0.256410256	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	48	12	5	0.416666667	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8119577	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	57	5	2	0.4	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.992473	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr10	20339742	12A2p6	cell line	sgMsh2	20339742	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	62	317	67	0.211356467	exonic	Bclaf1	nonsynonymous SNV	"Bclaf1:NM_001025393:exon11:c.G2428A:p.A810T,Bclaf1:NM_001025392:exon12:c.G2575A:p.A859T,Bclaf1:NM_153787:exon12:c.G2569A:p.A857T"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9219907	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr10	22370887	12A2p6	cell line	sgMsh2	22370887	A	G	SNV	Mutect2;MuSe;Vardict	3	0.085	266	11	0	0	exonic	Raet1d	nonsynonymous SNV	Raet1d:NM_020030:exon4:c.A113G:p.N38S	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.375988976	3	0.9999893	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	937	203	0.216648879	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.297	124	11	5	0.454545455	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	81	341	88	0.258064516	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9923679	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	25513051	12A2p6	cell line	sgMsh2	25513051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	476	104	0.218487395	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001358755:exon15:c.A2041G:p.T681A,Epb41l2:NM_001358754:exon16:c.A2356G:p.T786A,Epb41l2:NM_001358751:exon17:c.A2728G:p.T910A,Epb41l2:NM_001358753:exon18:c.A2533G:p.T845A,Epb41l2:NM_001199265:exon19:c.A2938G:p.T980A,Epb41l2:NM_013511:exon19:c.A2938G:p.T980A"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	85	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9838244	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	29196287	12A2p6	cell line	sgMsh2	29196287	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	66	22	3	0.136363636	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon6:c.G1574A:p.C525Y	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr10	29218194	12A2p6	cell line	sgMsh2	29218194	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	161	11	0	0	exonic	9330159F19Rik	nonsynonymous SNV	9330159F19Rik:NM_001162537:exon2:c.G75T:p.E25D	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999845	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	94	33	1	0.03030303	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.995264937	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr10	31951077	12A2p6	cell line	sgMsh2	31951077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	223	0	0	NA	exonic	Nkain2	synonymous SNV	Nkain2:NM_001025286:exon4:c.A516G:p.E172E	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	ATT	synonymous	NA	NA	NA	NA
M4	chr10	33766495	12A2p6	cell line	sgMsh2	33766495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	108	0	0	NA	exonic	Sult3a2	nonsynonymous SNV	Sult3a2:NM_001101452:exon6:c.T811C:p.F271L	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	124	17	1	0.058823529	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	CCT	synonymous	NA	NA	NA	NA
M4	chr10	41464291	12A2p6	cell line	sgMsh2	41464291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	105	13	6	0.461538462	exonic	Zbtb24	nonsynonymous SNV	"Zbtb24:NM_001277229:exon6:c.A1316G:p.Y439C,Zbtb24:NM_153398:exon7:c.A1382G:p.Y461C"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9993248	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	138	38	5	0.131578947	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	48	1	0	0	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9334238	GTT	synonymous	NA	NA	NA	NA
M4	chr10	42197031	12A2p6	cell line	sgMsh2	42197031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	124	48	16	0.333333333	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1489G:p.T497A,Foxo3:NM_019740:exon3:c.A1489G:p.T497A"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9974921	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	20	1	0.05	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	43	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.8737127	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	137	101	7	0.069306931	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999352	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr10	51481285	12A2p6	cell line	sgMsh2	51481285	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	145	0	0	NA	exonic	Lilr4b	nonsynonymous SNV	Lilr4b:NM_008147:exon3:c.A216T:p.E72D	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9968571	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	51494112	12A2p6	cell line	sgMsh2	51494112	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	232	0	0	NA	exonic	Lilrb4a	synonymous SNV	"Lilrb4a:NM_001291894:exon6:c.C484T:p.L162L,Lilrb4a:NM_013532:exon6:c.C745T:p.L249L"	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	CCT	synonymous	NA	NA	NA	NA
M4	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	61	1	0	0	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.47330377	2	0.7904672	TAC	synonymous	NA	NA	NA	NA
M4	chr10	52128447	12A2p6	cell line	sgMsh2	52128447	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	79	2	0	0	exonic	Ros1	frameshift deletion	Ros1:NM_011282:exon21:c.3076delA:p.T1026Hfs*35	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr10	52353368	12A2p6	cell line	sgMsh2	52353368	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	104	70	19	0.271428571	exonic	Gopc	nonsynonymous SNV	"Gopc:NM_053187:exon4:c.C754T:p.R252C,Gopc:NM_001199272:exon5:c.C778T:p.R260C"	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr10	52400715	12A2p6	cell line	sgMsh2	52400715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	58	0	0	NA	exonic	Nepn	synonymous SNV	Nepn:NM_025684:exon2:c.T546C:p.P182P	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.9929049	CTC	synonymous	NA	NA	NA	NA
M4	chr10	58477121	12A2p6	cell line	sgMsh2	58477121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	174	219	45	0.205479452	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.C3662T:p.S1221F	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999928	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	49	71	15	0.211267606	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	CAC	synonymous	NA	NA	NA	NA
M4	chr10	59352149	12A2p6	cell line	sgMsh2	59352149	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	96	187	31	0.165775401	exonic	P4ha1	synonymous SNV	"P4ha1:NM_001316370:exon7:c.C727T:p.L243L,P4ha1:NM_001316371:exon8:c.C967T:p.L323L,P4ha1:NM_011030:exon8:c.C967T:p.L323L"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	CCT	synonymous	NA	NA	NA	NA
M4	chr10	60306185	12A2p6	cell line	sgMsh2	60306185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	75	0	0	NA	exonic	Cdh23	nonsynonymous SNV	Cdh23:NM_001252635:exon62:c.T9116C:p.L3039P	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	61103258	12A2p6	cell line	sgMsh2	61103258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	119	22	0.18487395	exonic	Sgpl1	synonymous SNV	"Sgpl1:NM_001316673:exon12:c.C1161T:p.Y387Y,Sgpl1:NM_001316674:exon12:c.C1161T:p.Y387Y,Sgpl1:NM_009163:exon12:c.C1161T:p.Y387Y"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9833933	CGT	synonymous	NA	NA	NA	NA
M4	chr10	61343629	12A2p6	cell line	sgMsh2	61343629	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	35	5	1	0.2	exonic	Pald1	nonsynonymous SNV	"Pald1:NM_001372378:exon12:c.T1463G:p.L488R,Pald1:NM_013753:exon12:c.T1460G:p.L487R"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.972665	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	72	52	8	0.153846154	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.871409745	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr10	62665293	12A2p6	cell line	sgMsh2	62665293	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	59	0	0	NA	exonic	Stox1	nonsynonymous SNV	Stox1:NM_001033260:exon3:c.T1487C:p.M496T	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	CAT	nonsynonymous	ATGC	8	ATGCATGC	NA
M4	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	186	22	4	0.181818182	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.999979	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	91	85	29	0.341176471	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr10	67225440	12A2p6	cell line	sgMsh2	67225440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	177	59	16	0.271186441	exonic	Jmjd1c	nonsynonymous SNV	"Jmjd1c:NM_001242396:exon9:c.A3028G:p.S1010G,Jmjd1c:NM_207221:exon10:c.A3571G:p.S1191G"	10qB5.1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999994	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	68098161	12A2p6	cell line	sgMsh2	68098161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	158	23	6	0.260869565	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A1910G:p.D637G	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.610429161	2	0.9995119	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	134	41	8	0.195121951	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.380412376	3	0.9886758	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	143	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.999954	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	70950074	12A2p6	cell line	sgMsh2	70950074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	93	94	8	0.085106383	exonic	Bicc1	nonsynonymous SNV	"Bicc1:NM_001347189:exon10:c.A1237G:p.R413G,Bicc1:NM_031397:exon10:c.A1237G:p.R413G"	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr10	75584876	12A2p6	cell line	sgMsh2	75584876	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.138	30	0	0	NA	exonic	Ggt1	synonymous SNV	"Ggt1:NM_008116:exon9:c.T1074C:p.T358T,Ggt1:NM_001305992:exon10:c.T1074C:p.T358T,Ggt1:NM_001379540:exon10:c.T1074C:p.T358T,Ggt1:NM_001379541:exon10:c.T1074C:p.T358T,Ggt1:NM_001379537:exon11:c.T1074C:p.T358T,Ggt1:NM_001379538:exon11:c.T1074C:p.T358T,Ggt1:NM_001379539:exon11:c.T1074C:p.T358T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.610429161	2	0.5695021	CTG	synonymous	NA	NA	NA	NA
M4	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	170	51	0.3	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	AAG	synonymous	NA	NA	NA	NA
M4	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.285	14	54	15	0.277777778	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9100394	CTA	synonymous	NA	NA	NA	NA
M4	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	139	62	14	0.225806452	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999425	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9929505	CTG	synonymous	NA	NA	NA	NA
M4	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	158	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	77720913	12A2p6	cell line	sgMsh2	77720913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	122	0	0	NA	exonic	Krtap12-1	nonsynonymous SNV	Krtap12-1:NM_010670:exon1:c.C289T:p.P97S	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9927229	GCC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M4	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	127	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9968224	AAG	synonymous	NA	NA	NA	NA
M4	chr10	77996344	12A2p6	cell line	sgMsh2	77996344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	106	168	42	0.25	exonic	Pfkl	synonymous SNV	Pfkl:NM_008826:exon9:c.G912A:p.T304T	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	GCG	synonymous	NA	NA	NA	NA
M4	chr10	78586119	12A2p6	cell line	sgMsh2	78586119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	47	33	8	0.242424242	exonic	Syde1	nonsynonymous SNV	Syde1:NM_027875:exon7:c.T1775C:p.V592A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9864319	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	130	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.552924965	2	0.9894206	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	79746551	12A2p6	cell line	sgMsh2	79746551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	19	7	0	0	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon1:c.T2C:p.M1T	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9319201	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr10	79976809	12A2p6	cell line	sgMsh2	79976809	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	21	0	0	NA	exonic	Grin3b	frameshift deletion	Grin3b:NM_130455:exon9:c.2717delA:p.Q906Hfs*127	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	52	99	20	0.202020202	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	30	7	3	0.428571429	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9635259	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	80287586	12A2p6	cell line	sgMsh2	80287586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	74	24	0.324324324	exonic	Dazap1	nonsynonymous SNV	"Dazap1:NM_001122604:exon12:c.A1096G:p.S366G,Dazap1:NM_001122605:exon12:c.A1096G:p.S366G,Dazap1:NM_001378995:exon12:c.A1099G:p.S367G,Dazap1:NM_133188:exon12:c.A1093G:p.S365G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	CAG	nonsynonymous	CCAG	9	CCAGCCAGC	NA
M4	chr10	80293717	12A2p6	cell line	sgMsh2	80293717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	40	6354	1294	0.203651243	exonic	Rps15	synonymous SNV	"Rps15:NM_001310726:exon3:c.A84G:p.S28S,Rps15:NM_009091:exon3:c.A165G:p.S55S"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.79178855	1	0.7862652	CAC	synonymous	CACT	8	CACTCACT	NA
M4	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	48	1	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M4	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	50	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;MuSe;Vardict	3	0.25	21	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9391504	GTA	synonymous	NA	NA	NA	NA
M4	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	26	54	12	0.222222222	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.8918775	GTA	synonymous	NA	NA	NA	NA
M4	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	22	1	0	0	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.9424838	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	34	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.672356757	1	0.006047949	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.429	6	38	9	0.236842105	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.8593041	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	17	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.923869	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	109	75	23	0.306666667	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	121	137	22	0.160583942	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	66	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9891399	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	80907506	12A2p6	cell line	sgMsh2	80907506	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	36	45	7	0.155555556	exonic	Lmnb2	nonsynonymous SNV	Lmnb2:NM_010722:exon3:c.A428T:p.Q143L	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9337964	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	81179092	12A2p6	cell line	sgMsh2	81179092	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	154	3743	697	0.186214267	exonic	Eef2	synonymous SNV	Eef2:NM_007907:exon5:c.C624T:p.V208V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.875833144	1	0.9915523	TCC	synonymous	NA	NA	NA	NA
M4	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	55	35	8	0.228571429	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9914849	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	81420728	12A2p6	cell line	sgMsh2	81420728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	75	19	4	0.210526316	exonic	Nfic	nonsynonymous SNV	"Nfic:NM_008688:exon2:c.T101C:p.L34P,Nfic:NM_026756:exon2:c.T101C:p.L34P"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.694473756	2	0.7511515	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	81489952	12A2p6	cell line	sgMsh2	81489952	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	66	148	37	0.25	exonic	Ncln	nonsynonymous SNV	Ncln:NM_134009:exon8:c.G1058T:p.S353I	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	98	9	3	0.333333333	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	TTG	synonymous	NA	NA	NA	NA
M4	chr10	84528396	12A2p6	cell line	sgMsh2	84528396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	57	183	64	0.349726776	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A802G:p.T268A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr10	84880179	12A2p6	cell line	sgMsh2	84880179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	78	0	0	NA	exonic	Rfx4	nonsynonymous SNV	"Rfx4:NM_027689:exon10:c.A1079G:p.H360R,Rfx4:NM_001024918:exon14:c.A1361G:p.H454R"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	88340629	12A2p6	cell line	sgMsh2	88340629	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	65	0	0	NA	exonic	Dram1	nonsynonymous SNV	Dram1:NM_027878:exon3:c.T233A:p.V78E	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	8.76E-06	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	88	19	2	0.105263158	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8266579	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	95	14	4	0.285714286	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	118	87	23	0.264367816	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997992	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr10	91096121	12A2p6	cell line	sgMsh2	91096121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	109	37	19	0.513513514	exonic	Ikbip	nonsynonymous SNV	Ikbip:NM_026166:exon3:c.A626G:p.N209S	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	99758284	12A2p6	cell line	sgMsh2	99758284	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	14	0	0	exonic	Csl	nonsynonymous SNV	Csl:NM_027945:exon1:c.G918T:p.Q306H	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	103404710	12A2p6	cell line	sgMsh2	103404710	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	108	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon8:c.T1193A:p.V398D,Slc6a15:NM_001358821:exon8:c.T1193A:p.V398D,Slc6a15:NM_175328:exon9:c.T1193A:p.V398D"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr10	107023690	12A2p6	cell line	sgMsh2	107023690	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	exonic	Acss3	frameshift deletion	"Acss3:NM_001142804:exon7:c.1047delG:p.P350Lfs*60,Acss3:NM_198636:exon7:c.1047delG:p.P350Lfs*60"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	77	157	22	0.140127389	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	108261028	12A2p6	cell line	sgMsh2	108261028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	52	116	32	0.275862069	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368737:exon15:c.T2110C:p.Y704H,Ppp1r12a:NM_001368736:exon16:c.T2278C:p.Y760H,Ppp1r12a:NM_027892:exon16:c.T2278C:p.Y760H"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr10	115342637	12A2p6	cell line	sgMsh2	115342637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	67	12	0.179104478	exonic	Tmem19	nonsynonymous SNV	"Tmem19:NM_001359470:exon6:c.A925G:p.S309G,Tmem19:NM_001359471:exon7:c.A880G:p.S294G,Tmem19:NM_001359472:exon7:c.A880G:p.S294G,Tmem19:NM_133683:exon7:c.A880G:p.S294G"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	83	58	14	0.24137931	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9485941	TAC	synonymous	NA	NA	NA	NA
M4	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	120	4	1	0.25	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998218	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	117759286	12A2p6	cell line	sgMsh2	117759286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	83	140	37	0.264285714	exonic	Nup107	synonymous SNV	Nup107:NM_134010:exon24:c.T2151C:p.P717P	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	GAG	synonymous	NA	NA	NA	NA
M4	chr10	119210766	12A2p6	cell line	sgMsh2	119210766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	177	53	0.299435028	exonic	Cand1	nonsynonymous SNV	Cand1:NM_027994:exon10:c.T2818C:p.C940R	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	48	7	2	0.285714286	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.769671551	1	0.7189169	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M4	chr10	121267047	12A2p6	cell line	sgMsh2	121267047	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	67	7	1	0.142857143	exonic	Tbc1d30	synonymous SNV	"Tbc1d30:NM_029057:exon12:c.C2079A:p.A693A,Tbc1d30:NM_001361015:exon13:c.C2448A:p.A816A"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GGG	synonymous	NA	NA	NA	NA
M4	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	74	2	1	0.5	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	159	97	16	0.164948454	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	TTT	nonsynonymous	T	5	TTTTT	NA
M4	chr10	123175946	12A2p6	cell line	sgMsh2	123175946	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	131	84	14	0.166666667	exonic	Usp15	nonsynonymous SNV	"Usp15:NM_001301628:exon3:c.A245G:p.H82R,Usp15:NM_027604:exon3:c.A245G:p.H82R"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	103	8	8	1	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	126013352	12A2p6	cell line	sgMsh2	126013352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	93	4	0	0	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon18:c.T2940C:p.C980C	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	0.7660444	GTG	synonymous	NA	NA	NA	NA
M4	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	47	15	6	0.4	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9358691	CCG	synonymous	NA	NA	NA	NA
M4	chr10	127042004	12A2p6	cell line	sgMsh2	127042004	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	19	6	1	0.166666667	exonic	Mettl1	nonsynonymous SNV	Mettl1:NM_010792:exon1:c.A26C:p.Q9P	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	2	1	1	0.9319201	CAG	nonsynonymous	C	6	CCCCCC	NA
M4	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	120	4	0	0	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9959848	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	89	83	14	0.168674699	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988726	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	96	94	19	0.20212766	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	AAC	synonymous	NA	NA	NA	NA
M4	chr10	128116127	12A2p6	cell line	sgMsh2	128116127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	92	19	0.206521739	exonic	Baz2a	synonymous SNV	Baz2a:NM_054078:exon9:c.C1713T:p.G571G	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9992654	GCC	synonymous	NA	NA	NA	NA
M4	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	191	172	51	0.296511628	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.9818541	CAC	synonymous	NA	NA	NA	NA
M4	chr10	128323627	12A2p6	cell line	sgMsh2	128323627	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	94	318	77	0.242138365	exonic	Cnpy2	synonymous SNV	Cnpy2:NM_019953:exon3:c.C132T:p.R44R	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991626	GCG	synonymous	NA	NA	NA	NA
M4	chr10	128846564	12A2p6	cell line	sgMsh2	128846564	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	180	32	1	0.03125	exonic	Sarnp	nonsynonymous SNV	"Sarnp:NM_001359403:exon5:c.C281A:p.S94Y,Sarnp:NM_001359404:exon5:c.C284A:p.S95Y,Sarnp:NM_001359405:exon5:c.C281A:p.S94Y,Sarnp:NM_025364:exon5:c.C284A:p.S95Y,Sarnp:NM_001359406:exon6:c.C35A:p.S12Y,Sarnp:NM_001359407:exon6:c.C35A:p.S12Y"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.999995	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	163	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999862	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	69	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M4	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr10	129704911	12A2p6	cell line	sgMsh2	129704911	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	154	0	0	NA	exonic	Olfr804	nonsynonymous SNV	Olfr804:NM_001011821:exon1:c.T32A:p.I11N	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr10	129705777	12A2p6	cell line	sgMsh2	129705777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	158	0	0	NA	exonic	Olfr804	nonsynonymous SNV	Olfr804:NM_001011821:exon1:c.T898C:p.W300R	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr10	129722611	12A2p6	cell line	sgMsh2	129722611	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	330	0	0	NA	exonic	Olfr805	frameshift deletion	Olfr805:NM_146555:exon1:c.932delA:p.N311Tfs*3	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4	chr10	129723522	12A2p6	cell line	sgMsh2	129723522	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	exonic	Olfr805	nonsynonymous SNV	Olfr805:NM_146555:exon1:c.G21T:p.E7D	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr10	129790687	12A2p6	cell line	sgMsh2	129790687	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	189	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A901T:p.N301Y	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TTA	nonsynonymous	AATG	8	AATGAATG	NA
M4	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	250	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr10	129902575	12A2p6	cell line	sgMsh2	129902575	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	238	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.C152T:p.A51V	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	311	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr11	3488538	12A2p6	cell line	sgMsh2	3488538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	98	0	0	NA	exonic	Pla2g3	nonsynonymous SNV	Pla2g3:NM_172791:exon1:c.A187G:p.R63G	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	72	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9782344	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr11	4178196	12A2p6	cell line	sgMsh2	4178196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	43	92	16	0.173913043	exonic	Sf3a1	nonsynonymous SNV	Sf3a1:NM_026175:exon13:c.C2071T:p.P691S	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9828461	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr11	4670461	12A2p6	cell line	sgMsh2	4670461	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	33	33	4	0.121212121	exonic	Ascc2	nonsynonymous SNV	"Ascc2:NM_001376980:exon12:c.A1004G:p.E335G,Ascc2:NM_029291:exon13:c.A1346G:p.E449G"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9693129	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.201	33	51	10	0.196078431	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9109016	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	5689277	12A2p6	cell line	sgMsh2	5689277	G	T	SNV	Mutect2;Vardict	2	0.098	63	0	0	NA	exonic	Ankrd36	nonsynonymous SNV	Ankrd36:NM_023816:exon27:c.G4188T:p.E1396D	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.433493172	2	0.584902	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M4	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	109	2	0	0	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9878951	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	69	43	10	0.23255814	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.725437554	2	0.5597059	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	150	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	0.922309	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr11	6676635	12A2p6	cell line	sgMsh2	6676635	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	37	0	0	NA	exonic	Ramp3	nonsynonymous SNV	Ramp3:NM_019511:exon3:c.C341A:p.P114Q	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9756596	CCG	nonsynonymous	C	5	CCCCC	NA
M4	chr11	9328158	12A2p6	cell line	sgMsh2	9328158	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	108	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon24:c.C9337A:p.L3113I	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	9.95E-06	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	GTG	synonymous	NA	NA	NA	NA
M4	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	82	6	0	0	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9725754	TTA	synonymous	NA	NA	NA	NA
M4	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	122	712	143	0.200842697	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9914179	GCA	synonymous	NA	NA	NA	NA
M4	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	129	10	2	0.2	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	115	6	0	0	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M4	chr11	23884104	12A2p6	cell line	sgMsh2	23884104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	31	18	0	0	exonic	Papolg	nonsynonymous SNV	Papolg:NM_172555:exon6:c.A449G:p.D150G	11qA3.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9230947	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	138	87	15	0.172413793	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr11	30113869	12A2p6	cell line	sgMsh2	30113869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	124	417	60	0.143884892	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon27:c.A5909G:p.Y1970C,Sptbn1:NM_175836:exon27:c.A5948G:p.Y1983C"	11qA3.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	150	60	16	0.266666667	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9545647	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	115	55	11	0.2	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	81	54	12	0.222222222	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	CTT	synonymous	NA	NA	NA	NA
M4	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	130	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	167	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999891	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	75	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	152	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999735	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	75	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	57	185	33	0.178378378	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.765248151	1	0.6811442	CAC	synonymous	NA	NA	NA	NA
M4	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	119	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M4	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	140	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999335	GTT	synonymous	NA	NA	NA	NA
M4	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	121	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9954238	CTG	synonymous	NA	NA	NA	NA
M4	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	69	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9874708	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.09433617	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	185	65	3	0.046153846	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999963	AAC	synonymous	AACA	8	AACAAACA	NA
M4	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	60	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	44410330	12A2p6	cell line	sgMsh2	44410330	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	105	0	0	NA	exonic	Il12b	nonsynonymous SNV	Il12b:NM_001303244:exon5:c.C672A:p.S224R	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.690050356	2	0.09220018	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr11	46456407	12A2p6	cell line	sgMsh2	46456407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	153	0	0	NA	exonic	Havcr2	synonymous SNV	Havcr2:NM_134250:exon2:c.T210C:p.T70T	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.999975	CTG	synonymous	NA	NA	NA	NA
M4	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	78	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9881521	ATG	synonymous	NA	NA	NA	NA
M4	chr11	48800564	12A2p6	cell line	sgMsh2	48800564	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	69	6789	1352	0.199145677	exonic	Rack1	nonsynonymous SNV	Rack1:NM_008143:exon1:c.C101T:p.A34V	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9921334	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr11	49261859	12A2p6	cell line	sgMsh2	49261859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	97	55	12	0.218181818	exonic	Mgat1	nonsynonymous SNV	"Mgat1:NM_001110149:exon2:c.T1168C:p.Y390H,Mgat1:NM_001110150:exon3:c.T1168C:p.Y390H,Mgat1:NM_010794:exon3:c.T1168C:p.Y390H,Mgat1:NM_001110148:exon4:c.T1168C:p.Y390H"	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992995	GTA	nonsynonymous	GTACA	10	GTACAGTACA	NA
M4	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	325	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	1.89E-09	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	251	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	67	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	50161488	12A2p6	cell line	sgMsh2	50161488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	35	57	21	0.368421053	exonic	Tbc1d9b	nonsynonymous SNV	"Tbc1d9b:NM_001290759:exon16:c.A2518T:p.N840Y,Tbc1d9b:NM_001290760:exon16:c.A2521T:p.N841Y,Tbc1d9b:NM_029745:exon16:c.A2521T:p.N841Y"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.972665	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr11	50232605	12A2p6	cell line	sgMsh2	50232605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	68	117	28	0.239316239	exonic	Mgat4b	synonymous SNV	Mgat4b:NM_145926:exon8:c.T837C:p.T279T	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	CTA	synonymous	NA	NA	NA	NA
M4	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	32	2	0	0	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	2	1	1	0.9674904	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	116	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	2	1	1	0.9997739	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	56	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.992015	GCC	synonymous	NA	NA	NA	NA
M4	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	114	67	20	0.298507463	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	89	11	3	0.272727273	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9938198	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	125	224	14	0.0625	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	36	62	15	0.241935484	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9091173	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	71	46	11	0.239130435	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	GTA	synonymous	NA	NA	NA	NA
M4	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	140	13	0	0	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999458	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	33	94	19	0.20212766	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9437337	GTA	synonymous	NA	NA	NA	NA
M4	chr11	55289306	12A2p6	cell line	sgMsh2	55289306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	169	29	6	0.206896552	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon6:c.T4208C:p.V1403A	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999904	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	75	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	126	64	13	0.203125	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	0.6759988	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M4	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.167	43	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.738707753	1	0.000816221	CTG	synonymous	NA	NA	NA	NA
M4	chr11	58702248	12A2p6	cell line	sgMsh2	58702248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	284	0	0	NA	exonic	Olfr319	synonymous SNV	Olfr319:NM_146500:exon1:c.A546G:p.P182P	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	1.13E-08	CAT	synonymous	NA	NA	NA	NA
M4	chr11	58720289	12A2p6	cell line	sgMsh2	58720289	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	288	0	0	NA	exonic	Olfr318	nonsynonymous SNV	Olfr318:NM_146501:exon1:c.T758C:p.V253A	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	9.08E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	319	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9999998	AGT	synonymous	NA	NA	NA	NA
M4	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.086	400	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.380412376	3	2.41E-08	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M4	chr11	59589837	12A2p6	cell line	sgMsh2	59589837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	109	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.A251C:p.Q84P	11qB1.3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9996534	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	60201264	12A2p6	cell line	sgMsh2	60201264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	19	139	30	0.215827338	exonic	Srebf1	synonymous SNV	"Srebf1:NM_001313979:exon16:c.T2829C:p.T943T,Srebf1:NM_001358314:exon16:c.T2772C:p.T924T,Srebf1:NM_001358315:exon16:c.T2751C:p.T917T,Srebf1:NM_011480:exon16:c.T2844C:p.T948T"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	2	1	1	0.9319201	CAG	synonymous	NA	NA	NA	NA
M4	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	39	63	16	0.253968254	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.831599147	1	0.8564368	ACG	synonymous	NA	NA	NA	NA
M4	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	73	102	32	0.31372549	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	61719892	12A2p6	cell line	sgMsh2	61719892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	86	0	0	NA	exonic	Slc5a10	nonsynonymous SNV	"Slc5a10:NM_001382268:exon1:c.A61G:p.I21V,Slc5a10:NM_001033227:exon2:c.A61G:p.I21V"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	67	138	25	0.18115942	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Strelka2;Vardict	2	0.2184	206	221	11	0.049773756	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.966070499	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.225	247	1545	464	0.300323625	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr11	62595109	12A2p6	cell line	sgMsh2	62595109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	78	0	0	NA	exonic	Trpv2	nonsynonymous SNV	"Trpv2:NM_001382492:exon11:c.T1658C:p.L553P,Trpv2:NM_001382489:exon12:c.T1832C:p.L611P,Trpv2:NM_001382491:exon12:c.T1832C:p.L611P,Trpv2:NM_011706:exon13:c.T1832C:p.L611P,Trpv2:NM_001382490:exon14:c.T1832C:p.L611P"	11qB2	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9800077	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	64436143	12A2p6	cell line	sgMsh2	64436143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	24	0	0	NA	exonic	Hs3st3a1	nonsynonymous SNV	Hs3st3a1:NM_178870:exon1:c.T77C:p.L26S	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9486338	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	101	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9981737	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	140	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	0.7375653	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	226	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9999664	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	117	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997869	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	39	1	0	0	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.698897156	1	0.5464479	AAC	synonymous	NA	NA	NA	NA
M4	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	243	51	6	0.117647059	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	69101455	12A2p6	cell line	sgMsh2	69101455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	82	10	1	0.1	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon5:c.C534A:p.N178K,Per1:NM_011065:exon5:c.C534A:p.N178K"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr11	69364014	12A2p6	cell line	sgMsh2	69364014	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	103	84	5	0.05952381	exonic	Chd3	frameshift deletion	Chd3:NM_146019:exon3:c.499delA:p.T167Qfs*25	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	6	TTTTTT	-1
M4	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	49	26	5	0.192307692	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133205-69579350	4	2	2	0.99	4.379165722	NA	1	0.734284353	1	0.596967	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	67	74	17	0.22972973	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	2	1	1	0.9958357	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	69910904	12A2p6	cell line	sgMsh2	69910904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	96	9	2	0.222222222	exonic	Neurl4	nonsynonymous SNV	"Neurl4:NM_001291119:exon22:c.A3785G:p.Q1262R,Neurl4:NM_001013414:exon23:c.A3857G:p.Q1286R,Neurl4:NM_001291118:exon23:c.A3851G:p.Q1284R"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9992565	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	37	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.981994738	1	0.9702785	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	50	19	8	0.421052632	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.606005761	2	0.8213776	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	70551181	12A2p6	cell line	sgMsh2	70551181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	149	14	2	0.142857143	exonic	Pld2	nonsynonymous SNV	"Pld2:NM_001361935:exon10:c.T913C:p.F305L,Pld2:NM_001302475:exon11:c.T1012C:p.F338L,Pld2:NM_008876:exon11:c.T1012C:p.F338L"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.813905548	1	0.8601211	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	70681057	12A2p6	cell line	sgMsh2	70681057	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	52	19	4	0.210526316	exonic	Camta2	frameshift deletion	"Camta2:NM_001190379:exon8:c.1340delC:p.P447Rfs*63,Camta2:NM_001364103:exon8:c.1532delC:p.P511Rfs*63,Camta2:NM_001190376:exon9:c.1412delC:p.P471Rfs*63,Camta2:NM_001190378:exon9:c.1412delC:p.P471Rfs*63,Camta2:NM_178116:exon9:c.1427delC:p.P476Rfs*63"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4	chr11	70688628	12A2p6	cell line	sgMsh2	70688628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	94	3	0	0	exonic	Inca1	nonsynonymous SNV	"Inca1:NM_001252482:exon7:c.T674C:p.M225T,Inca1:NM_001252483:exon7:c.T674C:p.M225T,Inca1:NM_001252484:exon7:c.T674C:p.M225T,Inca1:NM_213729:exon7:c.T674C:p.M225T,Inca1:NM_001252485:exon8:c.T569C:p.M190T"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.725437554	2	0.7040423	CAT	nonsynonymous	ACTCCA	12	ACTCCAACTCCA	NA
M4	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	89	1	0	0	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.703320555	2	9.22E-05	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	42	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	2	1	1	0.9818129	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	73253066	12A2p6	cell line	sgMsh2	73253066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	100	0	0	NA	exonic	Trpv1	synonymous SNV	Trpv1:NM_001001445:exon13:c.T1827C:p.P609P	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.999414	CTG	synonymous	NA	NA	NA	NA
M4	chr11	73291659	12A2p6	cell line	sgMsh2	73291659	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	147	1	0	0	exonic	Trpv3	synonymous SNV	"Trpv3:NM_001371006:exon13:c.C1668A:p.A556A,Trpv3:NM_145099:exon13:c.C1668A:p.A556A"	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9999643	CCC	synonymous	CTGGG	11	CTGGGCTGGGC	NA
M4	chr11	73354283	12A2p6	cell line	sgMsh2	73354283	T	-	Deletion	Strelka2;Vardict	2	0.2381	315	0	0	NA	exonic	Olfr20	frameshift deletion	Olfr20:NM_146923:exon2:c.529delT:p.F178Sfs*7	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr11	73710482	12A2p6	cell line	sgMsh2	73710482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	100	0	0	NA	exonic	Zfp735	nonsynonymous SNV	Zfp735:NM_001126489:exon4:c.A251G:p.N84S	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.933337341	1	0.9954491	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	73814764	12A2p6	cell line	sgMsh2	73814764	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	284	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T317G:p.V106G	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	1.13E-08	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr11	74929705	12A2p6	cell line	sgMsh2	74929705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	66	22	8	0.363636364	exonic	Smg6	synonymous SNV	Smg6:NM_001002764:exon2:c.T801C:p.A267A	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9955813	CTG	synonymous	NA	NA	NA	NA
M4	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	90	25	4	0.16	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.933337341	1	0.9932933	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	153	165	31	0.187878788	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.729860954	2	0.8943905	CAC	synonymous	NA	NA	NA	NA
M4	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	72	96	25	0.260416667	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.756401352	1	0.5917516	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	76066765	12A2p6	cell line	sgMsh2	76066765	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	231	135	36	0.266666667	exonic	Vps53	nonsynonymous SNV	Vps53:NM_026664:exon18:c.C1991A:p.T664K	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.995264937	1	0.9999997	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	112	11	2	0.181818182	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9997131	ATG	synonymous	NA	NA	NA	NA
M4	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	47	15	1	0.066666667	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.981994738	1	0.9824614	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	77421249	12A2p6	cell line	sgMsh2	77421249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	138	31	9	0.290322581	exonic	Ssh2	synonymous SNV	"Ssh2:NM_001291190:exon7:c.A585G:p.E195E,Ssh2:NM_177710:exon8:c.A567G:p.E189E"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.999939	AAG	synonymous	NA	NA	NA	NA
M4	chr11	78037087	12A2p6	cell line	sgMsh2	78037087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	85	38	10	0.263157895	exonic	Dhrs13	nonsynonymous SNV	Dhrs13:NM_183286:exon5:c.T908C:p.L303P	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.822752348	1	0.8706941	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr11	78251141	12A2p6	cell line	sgMsh2	78251141	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	100	268	60	0.223880597	exonic	Sdf2	nonsynonymous SNV	"Sdf2:NM_001359106:exon2:c.C301T:p.R101C,Sdf2:NM_009143:exon2:c.C301T:p.R101C"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.999414	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	86	68	14	0.205882353	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9986525	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	37	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9756596	CTG	synonymous	NA	NA	NA	NA
M4	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	61	59	12	0.203389831	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9940585	CTA	synonymous	NA	NA	NA	NA
M4	chr11	80137029	12A2p6	cell line	sgMsh2	80137029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	107	21	2	0.095238095	exonic	Tefm	nonsynonymous SNV	Tefm:NM_183275:exon4:c.T902C:p.L301P	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9996136	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	131	164	36	0.219512195	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	1	1	0.9999074	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	82444564	12A2p6	cell line	sgMsh2	82444564	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	54	0	0	NA	exonic	Tmem132e	nonsynonymous SNV	Tmem132e:NM_001304439:exon9:c.A2471G:p.Y824C	11qC	chr11-69590981-82929860	4	4	0	0.99	4.379165722	NA	1	0.650239759	2	0.7500737	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	84023286	12A2p6	cell line	sgMsh2	84023286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	53	42	7	0.166666667	exonic	Synrg	synonymous SNV	Synrg:NM_194341:exon15:c.T2736C:p.L912L	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	7.83E-05	TTG	synonymous	NA	NA	NA	NA
M4	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	149	57	13	0.228070175	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999683	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr11	84822438	12A2p6	cell line	sgMsh2	84822438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	23	6	0.260869565	exonic	Dhrs11	nonsynonymous SNV	Dhrs11:NM_177564:exon4:c.T455C:p.M152T	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	84841568	12A2p6	cell line	sgMsh2	84841568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	82	214	39	0.182242991	exonic	Ggnbp2	nonsynonymous SNV	"Ggnbp2:NM_001364114:exon7:c.A698C:p.E233A,Ggnbp2:NM_001364115:exon7:c.A698C:p.E233A,Ggnbp2:NM_153144:exon7:c.A698C:p.E233A,Ggnbp2:NM_001364111:exon8:c.A824C:p.E275A,Ggnbp2:NM_001364112:exon8:c.A824C:p.E275A"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	84897560	12A2p6	cell line	sgMsh2	84897560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	25	14	2	0.142857143	exonic	Myo19	nonsynonymous SNV	"Myo19:NM_001362893:exon10:c.A178G:p.T60A,Myo19:NM_025414:exon12:c.A997G:p.T333A"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9514674	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	142	81	17	0.209876543	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999519	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	233	24	2	0.083333333	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	178	26	5	0.192307692	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999944	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	120	68	15	0.220588235	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.875833144	1	0.9827388	CAA	synonymous	CCT	8	CCTCCTCC	NA
M4	chr11	86289051	12A2p6	cell line	sgMsh2	86289051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	109	70	23	0.328571429	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon18:c.T4070C:p.L1357P	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	82	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	CCA	synonymous	NA	NA	NA	NA
M4	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	206	34	7	0.205882353	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999989	CTA	synonymous	NA	NA	NA	NA
M4	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	75	138	50	0.362318841	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9781136	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	83	48	14	0.291666667	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9937212	ACG	nonsynonymous	NA	NA	NA	NA
M4	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	33	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9693129	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr11	87914468	12A2p6	cell line	sgMsh2	87914468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	125	0	0	NA	exonic	Olfr464	nonsynonymous SNV	Olfr464:NM_146412:exon1:c.T437C:p.V146A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.853716146	1	0.9643107	CAC	nonsynonymous	CCA	9	CCACCACCA	NA
M4	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	14	4	0.285714286	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999384	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr11	94297860	12A2p6	cell line	sgMsh2	94297860	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	86	156	31	0.198717949	exonic	Luc7l3	nonsynonymous SNV	"Luc7l3:NM_001361573:exon7:c.T592A:p.F198I,Luc7l3:NM_001361574:exon7:c.T592A:p.F198I,Luc7l3:NM_001361575:exon7:c.T592A:p.F198I,Luc7l3:NM_026313:exon7:c.T592A:p.F198I"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.998283	AAG	nonsynonymous	A	5	AAAAA	NA
M4	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	81	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	61	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	94503202	12A2p6	cell line	sgMsh2	94503202	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	58	23	7	0.304347826	exonic	Mycbpap	frameshift deletion	Mycbpap:NM_170671:exon18:c.2621delC:p.P874Lfs*10	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	78	18	6	0.333333333	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	94650086	12A2p6	cell line	sgMsh2	94650086	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	84	21	8	0.380952381	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.G825T:p.M275I,Eme1:NM_177752:exon3:c.G825T:p.M275I"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	72	56	18	0.321428571	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	96961460	12A2p6	cell line	sgMsh2	96961460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	59	10	2	0.2	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon3:c.A634G:p.T212A,Sp2:NM_001363226:exon3:c.A619G:p.T207A,Sp2:NM_030220:exon3:c.A637G:p.T213A,Sp2:NM_001363225:exon4:c.A619G:p.T207A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.672356757	2	0.7207659	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	97168894	12A2p6	cell line	sgMsh2	97168894	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	139	408	113	0.276960784	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon14:c.C1738A:p.L580I	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999425	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	97378654	12A2p6	cell line	sgMsh2	97378654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	123	31	8	0.258064516	exonic	Socs7	nonsynonymous SNV	Socs7:NM_138657:exon6:c.A1504G:p.S502G	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9978001	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	102	1	1	1	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9808639	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	57	951	225	0.23659306	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.619275961	2	0.8518785	ATG	synonymous	NA	NA	NA	NA
M4	chr11	98005299	12A2p6	cell line	sgMsh2	98005299	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	80	2	0	0	exonic	Cacnb1	nonsynonymous SNV	"Cacnb1:NM_001159320:exon12:c.A1156C:p.I386L,Cacnb1:NM_001282978:exon12:c.A1138C:p.I380L,Cacnb1:NM_001159319:exon13:c.A1162C:p.I388L,Cacnb1:NM_001282977:exon13:c.A1297C:p.I433L,Cacnb1:NM_031173:exon13:c.A1297C:p.I433L,Cacnb1:NM_145121:exon13:c.A1162C:p.I388L"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	39	1	0	0	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9783332	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.2708	48	38	2	0.052631579	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M4	chr11	98397994	12A2p6	cell line	sgMsh2	98397994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	49	17	2	0.117647059	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon3:c.C334T:p.L112F	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	116	69	16	0.231884058	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9365612	AAG	synonymous	NA	NA	NA	NA
M4	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	125	3	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	CAT	synonymous	NA	NA	NA	NA
M4	chr11	98898812	12A2p6	cell line	sgMsh2	98898812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	106	34	5	0.147058824	exonic	Wipf2	nonsynonymous SNV	Wipf2:NM_197940:exon7:c.A1262G:p.Y421C	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	100011610	12A2p6	cell line	sgMsh2	100011610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	149	0	0	NA	exonic	Krt33a	synonymous SNV	Krt33a:NM_027983:exon7:c.T1203C:p.T401T	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999683	AAG	synonymous	NA	NA	NA	NA
M4	chr11	100696986	12A2p6	cell line	sgMsh2	100696986	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	36	0	0	NA	exonic	Dhx58	nonsynonymous SNV	Dhx58:NM_030150:exon11:c.C1744T:p.P582S	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	101077059	12A2p6	cell line	sgMsh2	101077059	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	45	44	13	0.295454545	exonic	Naglu	nonsynonymous SNV	Naglu:NM_013792:exon6:c.A1834C:p.S612R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.738707753	1	0.000697938	CAG	nonsynonymous	AGC	9	AGCAGCAGC	NA
M4	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	109	40	6	0.15	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	86	231	55	0.238095238	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	102480427	12A2p6	cell line	sgMsh2	102480427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	113	41	13	0.317073171	exonic	Gpatch8	nonsynonymous SNV	Gpatch8:NM_001159492:exon8:c.G2284T:p.G762C	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr11	102481373	12A2p6	cell line	sgMsh2	102481373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	111	44	14	0.318181818	exonic	Gpatch8	synonymous SNV	Gpatch8:NM_001159492:exon8:c.T1338C:p.S446S	11qD	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	TAC	synonymous	NA	NA	NA	NA
M4	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	66	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	64	23	6	0.260869565	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9950254	CCC	nonsynonymous	C	5	CCCCC	NA
M4	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	73	49	14	0.285714286	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	GTC	synonymous	NA	NA	NA	NA
M4	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9827888	TTC	synonymous	NA	NA	NA	NA
M4	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	31	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.09685671	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	96	2	0	0	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	156	326	74	0.226993865	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr11	106567953	12A2p6	cell line	sgMsh2	106567953	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	96	15	5	0.333333333	exonic	Tex2	nonsynonymous SNV	Tex2:NM_198292:exon2:c.T650A:p.V217D	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	106781891	12A2p6	cell line	sgMsh2	106781891	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	140	1093	308	0.28179323	exonic	Ddx5	nonsynonymous SNV	"Ddx5:NM_007840:exon13:c.C1807T:p.P603S,Ddx5:NM_001355676:exon14:c.C1807T:p.P603S,Ddx5:NM_001355677:exon14:c.C1807T:p.P603S"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999458	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	90	22	3	0.136363636	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	48	71	10	0.14084507	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M4	chr11	107056083	12A2p6	cell line	sgMsh2	107056083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	91	71	20	0.281690141	exonic	Bptf	synonymous SNV	"Bptf:NM_001359590:exon20:c.A6537G:p.V2179V,Bptf:NM_176850:exon20:c.A6537G:p.V2179V"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	CTA	synonymous	NA	NA	NA	NA
M4	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	42	10	0.238095238	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	ATA	synonymous	ATAA	8	ATAAATAA	NA
M4	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	42	11	0.261904762	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999209	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	109579702	12A2p6	cell line	sgMsh2	109579702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	46	82	23	0.280487805	exonic	Wipi1	nonsynonymous SNV	Wipi1:NM_145940:exon9:c.T890C:p.M297T	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	110113236	12A2p6	cell line	sgMsh2	110113236	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	151	0	0	NA	exonic	Abca9	nonsynonymous SNV	Abca9:NM_147220:exon31:c.A4000C:p.T1334P	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999718	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.28	164	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	78	36	5	0.138888889	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9628327	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	113821385	12A2p6	cell line	sgMsh2	113821385	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	64	0	0	NA	exonic	Sdk2	frameshift deletion	Sdk2:NM_172800:exon36:c.4955delC:p.P1652Lfs*27	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	107	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996136	CTT	synonymous	NA	NA	NA	NA
M4	chr11	114696809	12A2p6	cell line	sgMsh2	114696809	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	20	42	3	0.071428571	exonic	Ttyh2	nonsynonymous SNV	Ttyh2:NM_053273:exon4:c.G635T:p.R212M	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9356325	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	281	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	115587966	12A2p6	cell line	sgMsh2	115587966	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	63	6	1	0.166666667	exonic	Gga3	synonymous SNV	"Gga3:NM_001252067:exon11:c.A984G:p.S328S,Gga3:NM_173048:exon12:c.A1218G:p.S406S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	GTG	synonymous	NA	NA	NA	NA
M4	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	76	110	25	0.227272727	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	115886663	12A2p6	cell line	sgMsh2	115886663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	68	20	5	0.25	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon47:c.C7333T:p.H2445Y	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	57	18	2	0.111111111	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.751977952	1	0.6285228	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	115932895	12A2p6	cell line	sgMsh2	115932895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	44	11	1	0.090909091	exonic	Recql5	synonymous SNV	Recql5:NM_130454:exon1:c.T24C:p.T8T	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9311437	GAG	synonymous	NA	NA	NA	NA
M4	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	92	19	1	0.052631579	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	87	127	37	0.291338583	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	116135275	12A2p6	cell line	sgMsh2	116135275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	88	141	36	0.255319149	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A298G:p.T100A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	124	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9998595	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	38	46	12	0.260869565	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.535231366	2	0.7934797	CAC	synonymous	NA	NA	NA	NA
M4	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	67	8	4	0.5	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	116685182	12A2p6	cell line	sgMsh2	116685182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	79	2	0	0	exonic	St6galnac2	nonsynonymous SNV	St6galnac2:NM_009180:exon4:c.A442G:p.I148V	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9979572	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	134	35	0.26119403	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	GTG	synonymous	NA	NA	NA	NA
M4	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	16	166	45	0.271084337	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9195064	CTT	synonymous	NA	NA	NA	NA
M4	chr11	117721220	12A2p6	cell line	sgMsh2	117721220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	24	5	0.208333333	exonic	Tnrc6c	nonsynonymous SNV	Tnrc6c:NM_198022:exon5:c.A683G:p.N228S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	62	28	5	0.178571429	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.676780157	2	0.728984	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr11	118333525	12A2p6	cell line	sgMsh2	118333525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	5	0	0	exonic	Cep295nl	synonymous SNV	Cep295nl:NM_021440:exon3:c.G492A:p.K164K	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9850521	CCT	synonymous	NA	NA	NA	NA
M4	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	38	14	4	0.285714286	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	57	13	1	0.076923077	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9836889	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	26	18	5	0.277777778	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9541507	CAG	synonymous	NA	NA	NA	NA
M4	chr11	120110238	12A2p6	cell line	sgMsh2	120110238	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	48	106	35	0.330188679	exonic	Slc38a10	synonymous SNV	"Slc38a10:NM_001361697:exon12:c.G1509T:p.V503V,Slc38a10:NM_001361698:exon12:c.G1491T:p.V497V,Slc38a10:NM_001164798:exon13:c.G1755T:p.V585V,Slc38a10:NM_001164799:exon13:c.G1755T:p.V585V,Slc38a10:NM_001164800:exon13:c.G1755T:p.V585V,Slc38a10:NM_001361696:exon13:c.G1755T:p.V585V,Slc38a10:NM_001361699:exon13:c.G1080T:p.V360V,Slc38a10:NM_024249:exon13:c.G1755T:p.V585V"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	GCA	synonymous	NA	NA	NA	NA
M4	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	130	77	29	0.376623377	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9995895	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	49	20	7	0.35	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	0.767644	TAC	nonsynonymous	C	5	CCCCC	NA
M4	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	103	1960	459	0.234183673	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	CTG	synonymous	NA	NA	NA	NA
M4	chr11	120346789	12A2p6	cell line	sgMsh2	120346789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	130	2345	602	0.256716418	exonic	Actg1	nonsynonymous SNV	"Actg1:NM_009609:exon5:c.A832G:p.T278A,Actg1:NM_001313923:exon6:c.A466G:p.T156A"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9994151	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	66	1	0	0	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	GTG	synonymous	NA	NA	NA	NA
M4	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	54	182	32	0.175824176	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.899876	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr11	120494500	12A2p6	cell line	sgMsh2	120494500	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	92	23	0.25	exonic	Slc25a10	nonsynonymous SNV	Slc25a10:NM_013770:exon2:c.G114T:p.E38D	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	61	196	49	0.25	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9940585	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr11	120647724	12A2p6	cell line	sgMsh2	120647724	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	50	0	0	NA	exonic	Myadml2	nonsynonymous SNV	"Myadml2:NM_001204820:exon1:c.C284T:p.A95V,Myadml2:NM_026751:exon1:c.C284T:p.A95V"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.672356757	2	0.639699	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	8	3	0.375	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr11	121591223	12A2p6	cell line	sgMsh2	121591223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	180	60	20	0.333333333	exonic	Tbcd	nonsynonymous SNV	Tbcd:NM_029878:exon25:c.C2152A:p.L718I	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9999408	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	123	31	3	0.096774194	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M4	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	111	7	1	0.142857143	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.836022547	1	0.9233663	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	117	143	20	0.13986014	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.964301139	1	0.9992289	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr12	4697179	12A2p6	cell line	sgMsh2	4697179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	95	49	6	0.12244898	exonic	Itsn2	synonymous SNV	"Itsn2:NM_011365:exon29:c.T3498C:p.P1166P,Itsn2:NM_001198968:exon30:c.T3579C:p.P1193P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.765248151	1	0.5679224	CTA	synonymous	NA	NA	NA	NA
M4	chr12	4713050	12A2p6	cell line	sgMsh2	4713050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	119	35	5	0.142857143	exonic	Itsn2	synonymous SNV	"Itsn2:NM_011365:exon39:c.T4830C:p.G1610G,Itsn2:NM_001198968:exon40:c.T4911C:p.G1637G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9910584	GTC	synonymous	NA	NA	NA	NA
M4	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	158	24	3	0.125	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.712167355	2	0.957552	GTT	synonymous	TTA	8	TTATTATT	NA
M4	chr12	5137653	12A2p6	cell line	sgMsh2	5137653	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	66	0	0	NA	exonic	Klhl29	nonsynonymous SNV	Klhl29:NM_001164493:exon5:c.C710A:p.T237N	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	0.999688336	1	0.9955534	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	139	73	3	0.04109589	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	1	0.9999425	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M4	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	113	511	70	0.136986301	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.805058749	1	0.8067591	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	105	228	43	0.188596491	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.893526743	1	0.9865475	GAG	synonymous	NA	NA	NA	NA
M4	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	77	1562	97	0.062099872	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.495420768	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	241	73	11	0.150684932	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9985288	CTA	synonymous	NA	NA	NA	NA
M4	chr12	10394644	12A2p6	cell line	sgMsh2	10394644	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	112	38	8	0.210526316	exonic	Rdh14	nonsynonymous SNV	Rdh14:NM_023697:exon2:c.G494A:p.G165D	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62369936	2	0.9914231	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	150	34	3	0.088235294	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.836022547	1	0.9448284	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	16926990	12A2p6	cell line	sgMsh2	16926990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	21	304	60	0.197368421	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon2:c.A193G:p.N65D	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	1	0.9391504	AAA	nonsynonymous	AAAAAT	13	AAAAATAAAAATA	NA
M4	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;MuSe;Vardict	3	0.122	282	68	15	0.220588235	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.539654766	2	0.9972876	TTT	nonsynonymous	T	5	TTTTT	NA
M4	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	234	159	36	0.226415094	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9999779	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	30103159	12A2p6	cell line	sgMsh2	30103159	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	48	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon8:c.C1195T:p.L399L	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	0.7747749	AGC	synonymous	NA	NA	NA	NA
M4	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	227	264	4	0.015151515	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.707743955	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr12	31488277	12A2p6	cell line	sgMsh2	31488277	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	122	52	20	0.384615385	exonic	Cbll1	stopgain	"Cbll1:NM_001253847:exon6:c.C478T:p.R160X,Cbll1:NM_001253848:exon6:c.C466T:p.R156X,Cbll1:NM_134048:exon6:c.C475T:p.R159X"	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.716590754	2	0.8699704	CGT	nonsynonymous	NA	NA	NA	NA
M4	chr12	31492126	12A2p6	cell line	sgMsh2	31492126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	182	114	8	0.070175439	exonic	Cbll1	nonsynonymous SNV	"Cbll1:NM_001253847:exon3:c.T235C:p.F79L,Cbll1:NM_001253848:exon3:c.T223C:p.F75L,Cbll1:NM_134048:exon3:c.T232C:p.F78L"	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.561771764	2	0.9978762	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	167	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9990909	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	358	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.796211949	1	0.5804962	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr12	31709074	12A2p6	cell line	sgMsh2	31709074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	279	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A937G:p.M313V	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.871409745	1	0.9991291	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	239	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9999902	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	188	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.526384567	2	0.9751261	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr12	37581517	12A2p6	cell line	sgMsh2	37581517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	193	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.A1337G:p.K446R	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.95623	AAG	nonsynonymous	A	5	AAAAA	NA
M4	chr12	38857094	12A2p6	cell line	sgMsh2	38857094	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	229	0	0	NA	exonic	Etv1	nonsynonymous SNV	"Etv1:NM_001163154:exon8:c.T974G:p.L325R,Etv1:NM_001347379:exon10:c.T1040G:p.L347R,Etv1:NM_007960:exon11:c.T1094G:p.L365R"	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.827175747	1	0.9492405	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	170	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.654663158	2	0.9984592	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr12	41453999	12A2p6	cell line	sgMsh2	41453999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	256	0	0	NA	exonic	Lrrn3	synonymous SNV	"Lrrn3:NM_001271709:exon2:c.A318G:p.S106S,Lrrn3:NM_010733:exon2:c.A318G:p.S106S,Lrrn3:NM_001271708:exon3:c.A318G:p.S106S"	12qB1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.818328948	1	0.9168762	CTG	synonymous	NA	NA	NA	NA
M4	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	208	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.94218414	1	0.9999616	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr12	46700302	12A2p6	cell line	sgMsh2	46700302	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	184	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon4:c.A1119C:p.G373G,Nova1:NM_001364635:exon4:c.A1116C:p.G372G,Nova1:NM_001364638:exon5:c.A753C:p.G251G,Nova1:NM_021361:exon5:c.A1191C:p.G397G,Nova1:NM_001364636:exon6:c.A825C:p.G275G,Nova1:NM_001364637:exon7:c.A825C:p.G275G"	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.703320555	2	0.9875719	ATC	synonymous	NA	NA	NA	NA
M4	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	174	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9994918	CTG	synonymous	ACCT	8	ACCTACCT	NA
M4	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	86	58	8	0.137931034	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.78294175	1	0.702089	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	183	236	47	0.199152542	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.685626956	2	0.9952313	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	184	243	39	0.160493827	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9903014	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M4	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	79	94	9	0.095744681	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.94660754	1	0.9925491	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	52023659	12A2p6	cell line	sgMsh2	52023659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	280	0	0	NA	exonic	Gpr33	nonsynonymous SNV	Gpr33:NM_008159:exon2:c.A596G:p.Q199R	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.765248151	2	0.8901869	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	165	293	92	0.313993174	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M4	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	208	18	0	0	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.818328948	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M4	chr12	55739346	12A2p6	cell line	sgMsh2	55739346	T	-	Deletion	Strelka2;Vardict	2	0.1119	143	56	1	0.017857143	exonic	Ralgapa1	frameshift deletion	"Ralgapa1:NM_001003719:exon15:c.2087delA:p.K696Sfs*33,Ralgapa1:NM_001112714:exon15:c.2087delA:p.K696Sfs*33,Ralgapa1:NM_001286263:exon15:c.2087delA:p.K696Sfs*33,Ralgapa1:NM_001368814:exon15:c.2087delA:p.K696Sfs*33,Ralgapa1:NM_019994:exon15:c.2087delA:p.K696Sfs*33"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.494978429	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr12	56328711	12A2p6	cell line	sgMsh2	56328711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	144	243	26	0.106995885	exonic	Mbip	nonsynonymous SNV	Mbip:NM_145442:exon9:c.C1010T:p.A337V	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.575041963	2	0.9975382	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	58268086	12A2p6	cell line	sgMsh2	58268086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	69	0	0	NA	exonic	Clec14a	nonsynonymous SNV	Clec14a:NM_025809:exon1:c.G749A:p.R250K	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.482150569	2	0.8143458	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	83	120	0	0	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.94218414	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	139	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.429069773	3	0.8863591	CTA	synonymous	NA	NA	NA	NA
M4	chr12	64957294	12A2p6	cell line	sgMsh2	64957294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	301	38	3	0.078947368	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T444C:p.G148G	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	0.9999997	AAC	synonymous	NA	NA	NA	NA
M4	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	216	28	10	0.357142857	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.977571338	1	0.9999974	AAG	synonymous	NA	NA	NA	NA
M4	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	233	93	5	0.053763441	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.716590754	2	0.9932017	CAA	nonsynonymous	T	5	TTTTT	NA
M4	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	145	122	10	0.081967213	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.619275961	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr12	65152761	12A2p6	cell line	sgMsh2	65152761	T	-	Deletion	Strelka2;Vardict	2	0.1484	155	51	2	0.039215686	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon7:c.1365delA:p.D456Mfs*23	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.656432518	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M4	chr12	65158401	12A2p6	cell line	sgMsh2	65158401	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	187	62	1	0.016129032	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon3:c.996delA:p.K332Nfs*10	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.831599147	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	143	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.813905548	1	0.8585248	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	127	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	1	0.9998825	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	184	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.769671551	2	0.6488811	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	274	104	14	0.134615385	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.862562945	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4	chr12	69340984	12A2p6	cell line	sgMsh2	69340984	T	-	Deletion	Strelka2;Vardict	2	0.2895	38	83	8	0.096385542	exonic	Nemf	frameshift deletion	Nemf:NM_025441:exon14:c.1325delA:p.K442Sfs*17	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M4	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	127	829	138	0.166465621	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.9839163	GGC	synonymous	NA	NA	NA	NA
M4	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.223	101	154	16	0.103896104	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	0.986418137	1	0.9991577	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	267	1346	191	0.141901932	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.721014154	2	0.9961847	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	231	1097	213	0.194165907	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.681203557	2	0.9994172	GTA	synonymous	NA	NA	NA	NA
M4	chr12	72481457	12A2p6	cell line	sgMsh2	72481457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	98	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon20:c.A2529C:p.K843N,Lrrc9:NM_030070:exon20:c.A2532C:p.K844N"	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.526384567	2	0.9487428	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	277	46	7	0.152173913	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.760824752	2	0.9192176	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M4	chr12	73170595	12A2p6	cell line	sgMsh2	73170595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	242	188	13	0.069148936	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon3:c.T244C:p.Y82H	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.827175747	1	0.9530382	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	1	0	0	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.844869346	1	0.9684913	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	183	44	8	0.181818182	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.840445947	1	0.9673089	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr12	75878386	12A2p6	cell line	sgMsh2	75878386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	50	53	4	0.075471698	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon3:c.G132A:p.Q44Q	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.796211949	1	8.14E-05	AGC	synonymous	NA	NA	NA	NA
M4	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	210	32	7	0.21875	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.597158962	2	0.9999328	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.129	193	71	5	0.070422535	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.570618564	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	154	180	35	0.194444444	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.9350359	CTC	nonsynonymous	C	5	CCCCC	NA
M4	chr12	76782889	12A2p6	cell line	sgMsh2	76782889	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	220	137	20	0.145985401	exonic	Churc1	nonsynonymous SNV	Churc1:NM_206534:exon4:c.T323C:p.M108T	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.654663158	2	0.999852	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr12	78504694	12A2p6	cell line	sgMsh2	78504694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	133	9	1	0.111111111	exonic	Gphn	synonymous SNV	"Gphn:NM_172952:exon8:c.A807G:p.E269E,Gphn:NM_145965:exon9:c.A915G:p.E305E"	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9956798	AAT	synonymous	NA	NA	NA	NA
M4	chr12	78819316	12A2p6	cell line	sgMsh2	78819316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	64	142	21	0.147887324	exonic	Mpp5	nonsynonymous SNV	Mpp5:NM_019579:exon7:c.A914G:p.N305S	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	0.990841537	1	0.9940468	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	134	26	2	0.076923077	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.849292746	1	0.9624622	TCG	nonsynonymous	NA	NA	NA	NA
M4	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	109	18	3	0.166666667	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.973147938	1	0.9991553	AGA	synonymous	NA	NA	NA	NA
M4	chr12	79287650	12A2p6	cell line	sgMsh2	79287650	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	72	14	0	0	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon5:c.T593G:p.L198R	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.433493172	2	0.000587156	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	207	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.566195164	2	0.9991469	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	175	1	1	1	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.659086558	2	0.9984552	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	200	22	2	0.090909091	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.486573969	2	8.82E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	275	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.676780157	2	0.9999269	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr12	85030881	12A2p6	cell line	sgMsh2	85030881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	100	60	10	0.166666667	exonic	Ylpm1	nonsynonymous SNV	Ylpm1:NM_178363:exon5:c.T4379C:p.M1460T	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.712167355	2	0.8062315	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr12	85095044	12A2p6	cell line	sgMsh2	85095044	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	49	4	1	0.25	exonic	Prox2	frameshift deletion	"Prox2:NM_001361239:exon1:c.384delG:p.T129Pfs*2,Prox2:NM_001361238:exon2:c.384delG:p.T129Pfs*2,Prox2:NM_175198:exon2:c.384delG:p.T129Pfs*2"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	309	91	0	0	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.738707753	2	0.9932408	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr12	85296421	12A2p6	cell line	sgMsh2	85296421	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	143	6	0	0	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon3:c.C1331A:p.P444H	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.796211949	1	0.7356736	CCT	nonsynonymous	C	5	CCCCC	NA
M4	chr12	85322051	12A2p6	cell line	sgMsh2	85322051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	199	187	24	0.128342246	exonic	Nek9	nonsynonymous SNV	Nek9:NM_145138:exon9:c.A967G:p.N323D	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.809482149	1	0.8395857	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	86882318	12A2p6	cell line	sgMsh2	86882318	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	50	115	20	0.173913043	exonic	Irf2bpl	frameshift deletion	Irf2bpl:NM_145836:exon1:c.1580delC:p.P527Rfs*10	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.526384567	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	69	124	19	0.153225806	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.583888763	2	0.9497502	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	96	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.893526743	1	0.9829511	CTT	synonymous	NA	NA	NA	NA
M4	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	119	42	2	0.047619048	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.769671551	1	0.5321076	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	91	37	6	0.162162162	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.47772717	2	0.7567005	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	286	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9999985	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	165	14	7	0.5	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.9183916	ATG	synonymous	NA	NA	NA	NA
M4	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	177	51	8	0.156862745	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.721014154	2	0.9603573	TGA	synonymous	NA	NA	NA	NA
M4	chr12	100123103	12A2p6	cell line	sgMsh2	100123103	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	74	487	69	0.141683778	exonic	Psmc1	nonsynonymous SNV	Psmc1:NM_008947:exon10:c.A1231G:p.M411V	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.964301139	1	0.9938179	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	108	63	4	0.063492063	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.9934349	TAG	synonymous	NA	NA	NA	NA
M4	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	61	25	2	0.08	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.8315547	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	124	25	0	0	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.659086558	2	0.9844624	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	92	29	6	0.206896552	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.933337341	1	0.9937933	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.188	264	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.831599147	NA	NA	CCA	frameshift	NA	NA	NA	1
M4	chr12	101651184	12A2p6	cell line	sgMsh2	101651184	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	52	0	0	NA	exonic	Tc2n	frameshift deletion	"Tc2n:NM_001082976:exon11:c.1167delT:p.F389Lfs*1,Tc2n:NM_028924:exon11:c.1167delT:p.F389Lfs*1"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	97	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.79178855	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M4	chr12	102389976	12A2p6	cell line	sgMsh2	102389976	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	121	46	11	0.239130435	exonic	Rin3	synonymous SNV	"Rin3:NM_001161365:exon10:c.C2535T:p.D845D,Rin3:NM_177620:exon10:c.C2775T:p.D925D"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.95103094	1	0.9989588	ACG	synonymous	NA	NA	NA	NA
M4	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	118	114	19	0.166666667	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.9161604	TTC	synonymous	NA	NA	NA	NA
M4	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	46	82	10	0.12195122	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.606005761	2	0.7832631	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	210	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.619275961	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr12	103235687	12A2p6	cell line	sgMsh2	103235687	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.196	57	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon3:c.A128C:p.K43T	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.866986345	1	0.9272979	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	184	197	41	0.208121827	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.813905548	1	0.869134	GAG	synonymous	NA	NA	NA	NA
M4	chr12	103763803	12A2p6	cell line	sgMsh2	103763803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	404	0	0	NA	exonic	Serpina1d	nonsynonymous SNV	Serpina1d:NM_009246:exon5:c.A1119C:p.Q373H	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.570618564	2	0.9999961	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.154	116	55	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.681203557	NA	NA	TGT	frameshift	T	5	TTTTT	1
M4	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	125	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.968724538	1	0.9995588	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	106	18	3	0.166666667	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.690050356	2	0.9107161	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	107	17	2	0.117647059	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.716590754	2	0.8151703	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	77	9	1	0.111111111	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.889103343	1	0.9689817	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr12	111103704	12A2p6	cell line	sgMsh2	111103704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	90	107	13	0.121495327	exonic	Rcor1	nonsynonymous SNV	Rcor1:NM_198023:exon8:c.T934C:p.F312L	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.672356757	2	0.09633971	GTT	nonsynonymous	TTTC	9	TTTCTTTCT	NA
M4	chr12	111485283	12A2p6	cell line	sgMsh2	111485283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	108	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A488G:p.H163R	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	2	0.986418137	1	0.9994281	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr12	111540548	12A2p6	cell line	sgMsh2	111540548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	242	812	138	0.169950739	exonic	Eif5	nonsynonymous SNV	"Eif5:NM_173363:exon6:c.A415G:p.T139A,Eif5:NM_178041:exon6:c.A415G:p.T139A"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9985768	TAC	nonsynonymous	CATT	9	CATTCATTC	NA
M4	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	103	17	1	0.058823529	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.504267568	2	0.888693	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	94	50	6	0.12	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.09906611	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	115	167	20	0.119760479	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9917045	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr12	112909185	12A2p6	cell line	sgMsh2	112909185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	112	79	18	0.227848101	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon26:c.A3448G:p.T1150A	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9902407	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	116	35	3	0.085714286	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.548501565	2	0.9831493	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	172	51	13	0.254901961	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.805058749	1	0.801887	AGT	synonymous	NA	NA	NA	NA
M4	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	291	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.672356757	2	0.9999741	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	185	284	34	0.11971831	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.999695	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	173	280	2	0.007142857	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.800635349	1	0.7616689	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M4	chr12	117577641	12A2p6	cell line	sgMsh2	117577641	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	120	5	0	0	exonic	Rapgef5	synonymous SNV	"Rapgef5:NM_001373989:exon3:c.C288A:p.S96S,Rapgef5:NM_175930:exon5:c.C93A:p.S31S"	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.9347826	CCT	synonymous	NA	NA	NA	NA
M4	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	118	4	2	0.5	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.9304345	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	230	6	1	0.166666667	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.760824752	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	127	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.774094951	1	7.97E-08	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr12	117995212	12A2p6	cell line	sgMsh2	117995212	C	A	SNV	Mutect2;Vardict	2	0.155	28	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon55:c.G8935T:p.A2979S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.685626956	1	0.00630766	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	273	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.858139545	1	0.99701	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr12	118041025	12A2p6	cell line	sgMsh2	118041025	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	104	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon40:c.A6560C:p.K2187T	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.62369936	2	0.9866744	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr12	118901376	12A2p6	cell line	sgMsh2	118901376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	340	0	0	NA	exonic	Abcb5	nonsynonymous SNV	Abcb5:NM_029961:exon20:c.A2405G:p.D802G	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.734284353	2	0.9977696	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	138	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.725437554	2	0.8775121	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	229	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.379165722	NA	1	0.822752348	1	0.9319156	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr13	8570039	12A2p6	cell line	sgMsh2	8570039	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	43	0	0	NA	exonic	Adarb2	nonsynonymous SNV	"Adarb2:NM_001289530:exon3:c.A560C:p.K187T,Adarb2:NM_052977:exon3:c.A560C:p.K187T"	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9401855	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr13	9151149	12A2p6	cell line	sgMsh2	9151149	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	190	139	32	0.230215827	exonic	Larp4b	synonymous SNV	"Larp4b:NM_001311117:exon11:c.G1056A:p.Q352Q,Larp4b:NM_172585:exon11:c.G1056A:p.Q352Q"	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999972	AGC	synonymous	CAG	9	CAGCAGCAG	NA
M4	chr13	11738141	12A2p6	cell line	sgMsh2	11738141	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	79	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon37:c.5293delT:p.S1765Pfs*5	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	127	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9751959	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr13	20914979	12A2p6	cell line	sgMsh2	20914979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	181	0	0	NA	exonic	Aoah	nonsynonymous SNV	Aoah:NM_012054:exon10:c.T727C:p.Y243H	13qA2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999953	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr13	21722370	12A2p6	cell line	sgMsh2	21722370	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	166	2	0	0	exonic	H2bc14	synonymous SNV	H2bc14:NM_178200:exon1:c.G273A:p.T91T	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999885	CGT	synonymous	NA	NA	NA	NA
M4	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	282	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	1.26E-08	GGC	synonymous	NA	NA	NA	NA
M4	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	186	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999965	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr13	22354916	12A2p6	cell line	sgMsh2	22354916	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	252	0	0	NA	exonic	Vmn1r198	nonsynonymous SNV	Vmn1r198:NM_134220:exon1:c.A571C:p.I191L	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr13	22383470	12A2p6	cell line	sgMsh2	22383470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	381	0	0	NA	exonic	Vmn1r199	synonymous SNV	Vmn1r199:NM_134213:exon1:c.T933C:p.P311P	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	1.03E-09	CTC	synonymous	NA	NA	NA	NA
M4	chr13	22883342	12A2p6	cell line	sgMsh2	22883342	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	179	0	0	NA	exonic	Vmn1r212	nonsynonymous SNV	Vmn1r212:NM_134241:exon1:c.C820A:p.L274I	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999931	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr13	23011606	12A2p6	cell line	sgMsh2	23011606	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	308	0	0	NA	exonic	Vmn1r213	nonsynonymous SNV	Vmn1r213:NM_134215:exon1:c.T358G:p.W120G	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr13	23706914	12A2p6	cell line	sgMsh2	23706914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	33	8	4	0.5	exonic	Hfe	nonsynonymous SNV	"Hfe:NM_001347493:exon2:c.G241A:p.A81T,Hfe:NM_010424:exon3:c.G505A:p.A169T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9693129	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	86	259	63	0.243243243	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	GCA	synonymous	NA	NA	NA	NA
M4	chr13	24981025	12A2p6	cell line	sgMsh2	24981025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	124	0	0	NA	exonic	Gpld1	nonsynonymous SNV	Gpld1:NM_008156:exon19:c.T1747C:p.S583P	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9950817	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr13	27199458	12A2p6	cell line	sgMsh2	27199458	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	111	0	0	NA	exonic	Prl3c1	frameshift deletion	"Prl3c1:NM_001163218:exon2:c.106delA:p.M38Cfs*4,Prl3c1:NM_013766:exon2:c.166delA:p.M58Cfs*4"	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr13	34044506	12A2p6	cell line	sgMsh2	34044506	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	118	69	14	0.202898551	exonic	Bphl	nonsynonymous SNV	Bphl:NM_026512:exon2:c.C190A:p.L64I	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997992	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr13	34910543	12A2p6	cell line	sgMsh2	34910543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	172	0	0	NA	exonic	Fam217a	nonsynonymous SNV	Fam217a:NM_027967:exon8:c.A1232G:p.K411R	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999919	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	68	67	17	0.253731343	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9613339	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	67	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr13	42156838	12A2p6	cell line	sgMsh2	42156838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	139	26	1	0.038461538	exonic	Hivep1	synonymous SNV	Hivep1:NM_007772:exon4:c.T2553C:p.P851P	13qA4	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9994343	CTC	synonymous	CCTCCC	12	CCTCCCCCTCCC	NA
M4	chr13	42158323	12A2p6	cell line	sgMsh2	42158323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	124	41	15	0.365853659	exonic	Hivep1	nonsynonymous SNV	Hivep1:NM_007772:exon4:c.G4038T:p.R1346S	13qA4	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	152	51	10	0.196078431	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9800479	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr13	45567492	12A2p6	cell line	sgMsh2	45567492	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	79	5	2	0.4	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon6:c.G926T:p.R309M,Atxn1:NM_001199305:exon7:c.G926T:p.R309M,Atxn1:NM_009124:exon7:c.G926T:p.R309M"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr13	47098300	12A2p6	cell line	sgMsh2	47098300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	123	315	64	0.203174603	exonic	Dek	nonsynonymous SNV	Dek:NM_025900:exon7:c.A629G:p.K210R	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	CTT	nonsynonymous	GTTCC	10	GTTCCGTTCC	NA
M4	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	100	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9940318	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	74	0	0	NA	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8644686	GTA	synonymous	NA	NA	NA	NA
M4	chr13	49090904	12A2p6	cell line	sgMsh2	49090904	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	39	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon7:c.G1455C:p.K485N,Wnk2:NM_001290313:exon7:c.G1455C:p.K485N,Wnk2:NM_029361:exon7:c.G1455C:p.K485N"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.47772717	2	0.7897734	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr13	49101083	12A2p6	cell line	sgMsh2	49101083	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.226	45	0	0	NA	exonic	Wnk2	frameshift insertion	"Wnk2:NM_001290311:exon4:c.954dupC:p.I319Hfs*4,Wnk2:NM_001290313:exon4:c.954dupC:p.I319Hfs*4,Wnk2:NM_029361:exon4:c.954dupC:p.I319Hfs*4"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.999688336	NA	NA	ATG	frameshift	G	5	GGGGG	1
M4	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	114	9	1	0.111111111	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	80	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	31	13	0	0	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	9.76E-06	AAG	synonymous	NA	NA	NA	NA
M4	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	45	13	4	0.307692308	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M4	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.346	56	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M4	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	114	52	6	0.115384615	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.9734935	AAC	synonymous	NA	NA	NA	NA
M4	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	99	13	0	0	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993781	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr13	55450302	12A2p6	cell line	sgMsh2	55450302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	147	51	12	0.235294118	exonic	Grk6	synonymous SNV	"Grk6:NM_001038018:exon3:c.T186C:p.I62I,Grk6:NM_001112711:exon3:c.T186C:p.I62I,Grk6:NM_001286063:exon3:c.T90C:p.I30I,Grk6:NM_001286064:exon3:c.T186C:p.I62I,Grk6:NM_001286065:exon3:c.T186C:p.I62I,Grk6:NM_011938:exon3:c.T186C:p.I62I,Grk6:NM_001377076:exon4:c.T171C:p.I57I"	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9998795	TTG	synonymous	NA	NA	NA	NA
M4	chr13	55595590	12A2p6	cell line	sgMsh2	55595590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	41	321	92	0.286604361	exonic	Tmed9	synonymous SNV	Tmed9:NM_026211:exon4:c.C534T:p.I178I	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9716421	TCC	synonymous	NA	NA	NA	NA
M4	chr13	56631281	12A2p6	cell line	sgMsh2	56631281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	85	0	0	NA	exonic	Tgfbi	nonsynonymous SNV	Tgfbi:NM_009369:exon10:c.T1316C:p.M439T	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9601236	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr13	60761184	12A2p6	cell line	sgMsh2	60761184	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	41	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon26:c.G3610A:p.E1204K,Dapk1:NM_029653:exon26:c.G3610A:p.E1204K,Dapk1:NM_134062:exon26:c.G3610A:p.E1204K"	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	2	1	1	0.9807187	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	224	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	6	2	0.333333333	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	CTA	synonymous	NA	NA	NA	NA
M4	chr13	65035762	12A2p6	cell line	sgMsh2	65035762	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	215	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1117G:p.K373E	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9968912	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr13	65037091	12A2p6	cell line	sgMsh2	65037091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	88	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A2446G:p.R816G	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9852318	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr13	66908064	12A2p6	cell line	sgMsh2	66908064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	210	2	1	0.5	exonic	Gm10767	synonymous SNV	Gm10767:NM_001177750:exon3:c.T120C:p.V40V	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999992	TTG	synonymous	NA	NA	NA	NA
M4	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	130	28	6	0.214285714	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.977571338	NA	NA	TAG	frameshift	NA	NA	NA	-1
M4	chr13	67546686	12A2p6	cell line	sgMsh2	67546686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	300	15	4	0.266666667	exonic	Zfp748	synonymous SNV	Zfp748:NM_001035231:exon2:c.T72C:p.P24P	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9999995	CAG	synonymous	NA	NA	NA	NA
M4	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	67	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr13	72630938	12A2p6	cell line	sgMsh2	72630938	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	50	0	0	NA	exonic	Irx2	nonsynonymous SNV	Irx2:NM_010574:exon2:c.A620G:p.K207R	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr13	74668004	12A2p6	cell line	sgMsh2	74668004	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	192	19	2	0.105263158	exonic	Erap1	stopgain	Erap1:NM_030711:exon11:c.G1538A:p.W513X	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999975	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	120	49	16	0.326530612	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.743131153	2	0.7034936	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	106	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995899	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	77	2	0	0	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr13	89725447	12A2p6	cell line	sgMsh2	89725447	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	204	14	8	0.571428571	exonic	Vcan	nonsynonymous SNV	"Vcan:NM_001081249:exon3:c.A287C:p.D96A,Vcan:NM_001134474:exon3:c.A287C:p.D96A,Vcan:NM_001134475:exon3:c.A287C:p.D96A,Vcan:NM_019389:exon3:c.A287C:p.D96A,Vcan:NM_172955:exon3:c.A287C:p.D96A"	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999988	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	205	6	3	0.5	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999989	CTT	synonymous	NA	NA	NA	NA
M4	chr13	92575439	12A2p6	cell line	sgMsh2	92575439	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	112	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A528T:p.K176N	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997131	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr13	92777103	12A2p6	cell line	sgMsh2	92777103	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	73	11	2	0.181818182	exonic	Thbs4	nonsynonymous SNV	Thbs4:NM_011582:exon3:c.G308A:p.R103H	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	51	16	3	0.1875	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.672356757	2	0.6492293	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	121	118	33	0.279661017	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	0.8465811	ATT	synonymous	NA	NA	NA	NA
M4	chr13	100299320	12A2p6	cell line	sgMsh2	100299320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	462	0	0	NA	exonic	Naip6;Naip7	synonymous SNV	"Naip6:NM_010871:exon9:c.A2694G:p.V898V,Naip7:NM_021545:exon10:c.A2694G:p.V898V"	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.575041963	2	0.9999996	GTA	synonymous	NA	NA	NA	NA
M4	chr13	104802182	12A2p6	cell line	sgMsh2	104802182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	25	55	13	0.236363636	exonic	Cwc27	nonsynonymous SNV	"Cwc27:NM_001360094:exon7:c.T619C:p.F207L,Cwc27:NM_026072:exon7:c.T619C:p.F207L"	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9514674	AAA	nonsynonymous	AAAG	8	AAAGAAAG	NA
M4	chr13	106889392	12A2p6	cell line	sgMsh2	106889392	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	175	64	11	0.171875	exonic	Ipo11	nonsynonymous SNV	"Ipo11:NM_001360897:exon12:c.G1189A:p.G397R,Ipo11:NM_029665:exon12:c.G1189A:p.G397R"	13qD2.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9999055	CCT	nonsynonymous	CTC	8	CTCCTCCT	NA
M4	chr13	108386851	12A2p6	cell line	sgMsh2	108386851	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	26	5	0.192307692	exonic	Depdc1b	nonsynonymous SNV	Depdc1b:NM_178683:exon10:c.C1259A:p.A420D	13qD2.1	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9648631	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	60	71	16	0.225352113	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.9309631	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr13	112911024	12A2p6	cell line	sgMsh2	112911024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	161	111	17	0.153153153	exonic	Mtrex	synonymous SNV	Mtrex:NM_028151:exon8:c.A786G:p.V262V	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9998864	CTA	synonymous	NA	NA	NA	NA
M4	chr13	114849343	12A2p6	cell line	sgMsh2	114849343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	230	417	105	0.251798561	exonic	Itga2	synonymous SNV	Itga2:NM_008396:exon24:c.T2895C:p.G965G	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	GAC	synonymous	NA	NA	NA	NA
M4	chr13	114869213	12A2p6	cell line	sgMsh2	114869213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	171	335	86	0.256716418	exonic	Itga2	nonsynonymous SNV	Itga2:NM_008396:exon12:c.A1430G:p.Q477R	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9962906	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	165	9	4	0.444444444	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999878	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	108	8	1	0.125	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.6338229	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	7818260	12A2p6	cell line	sgMsh2	7818260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	94	437	95	0.217391304	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon1:c.A109G:p.I37V,Flnb:NM_134080:exon1:c.A109G:p.I37V"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.716590754	2	0.7544988	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	130	924	246	0.266233766	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9990053	CCT	synonymous	NA	NA	NA	NA
M4	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	43	2	0	0	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9828461	CAG	synonymous	NA	NA	NA	NA
M4	chr14	12465912	12A2p6	cell line	sgMsh2	12465912	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	145	39	0	0	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon20:c.C2949A:p.S983S,Cadps:NM_012061:exon20:c.C2997A:p.S999S,Cadps:NM_001042617:exon22:c.C2979A:p.S993S,Cadps:NM_001359919:exon22:c.C2967A:p.S989S,Cadps:NM_001359921:exon22:c.C3036A:p.S1012S"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	TGG	synonymous	NA	NA	NA	NA
M4	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	74	31	14	0.451612903	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	22	13	0.590909091	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	69	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	126	17	4	0.235294118	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	60	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.840445947	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	56	34	2	0.058823529	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.992015	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	157	240	66	0.275	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9998628	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	125	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.694473756	2	0.9445693	GAA	nonsynonymous	A	5	AAAAA	NA
M4	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	125	53	9	0.169811321	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.685626956	2	0.9599235	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	64	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.897950143	NA	NA	TCC	frameshift	NA	NA	NA	-1
M4	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	1130	267	0.236283186	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9586993	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	30607639	12A2p6	cell line	sgMsh2	30607639	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	107	206	50	0.242718447	exonic	Prkcd	synonymous SNV	"Prkcd:NM_001310682:exon3:c.G345A:p.L115L,Prkcd:NM_011103:exon4:c.G345A:p.L115L"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996136	TCA	synonymous	NA	NA	NA	NA
M4	chr14	30689749	12A2p6	cell line	sgMsh2	30689749	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	23	9	0.391304348	exonic	Rft1	nonsynonymous SNV	Rft1:NM_177815:exon12:c.T1253C:p.L418S	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	86	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9875457	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	70	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	CAA	synonymous	NA	NA	NA	NA
M4	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	174	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	123	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	31256261	12A2p6	cell line	sgMsh2	31256261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	69	100	21	0.21	exonic	Bap1	nonsynonymous SNV	Bap1:NM_027088:exon11:c.T1082C:p.L361P	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.570618564	2	0.9528424	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	95	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	8.97E-07	AGC	synonymous	NA	NA	NA	NA
M4	chr14	32158169	12A2p6	cell line	sgMsh2	32158169	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	164	0	0	NA	exonic	Msmb	synonymous SNV	Msmb:NM_020597:exon4:c.C315A:p.T105T	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	CCT	synonymous	NA	NA	NA	NA
M4	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	80	25	4	0.16	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9970031	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	50	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.1667	24	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.737380733	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4	chr14	34414822	12A2p6	cell line	sgMsh2	34414822	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	145	39	0.268965517	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon12:c.C1411T:p.R471C	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.875833144	1	0.983789	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	80	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	58	2	1	0.5	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9929049	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	44103024	12A2p6	cell line	sgMsh2	44103024	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	389	0	0	NA	exonic	Ear12;Ear2;Ear3	nonsynonymous SNV	"Ear12:NM_001012766:exon1:c.A138C:p.Q46H,Ear3:NM_017388:exon1:c.A138C:p.Q46H,Ear2:NM_007895:exon2:c.A138C:p.Q46H"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	1.02E-09	AAT	nonsynonymous	AATGT	10	AATGTAATGT	NA
M4	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.18	132	43	5	0.11627907	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	9.46E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	132	44	12	0.272727273	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9994663	GAC	synonymous	NA	NA	NA	NA
M4	chr14	46814301	12A2p6	cell line	sgMsh2	46814301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	130	290	70	0.24137931	exonic	Gmfb	synonymous SNV	Gmfb:NM_022023:exon6:c.G300A:p.Q100Q	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	GCT	synonymous	CTG	8	CTGCTGCT	NA
M4	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	52	30	5	0.166666667	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	2	1	1	0.9898897	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	47416452	12A2p6	cell line	sgMsh2	47416452	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	113	157	38	0.242038217	exonic	Dlgap5	nonsynonymous SNV	Dlgap5:NM_144553:exon2:c.A119G:p.E40G	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9996812	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	100	18	3	0.166666667	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.677	42	9	2	0.222222222	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M4	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	245	39	13	0.333333333	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr14	50238124	12A2p6	cell line	sgMsh2	50238124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	166	0	0	NA	exonic	Olfr731	nonsynonymous SNV	Olfr731:NM_146363:exon1:c.T760C:p.C254R	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999885	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	TAA	synonymous	NA	NA	NA	NA
M4	chr14	50362621	12A2p6	cell line	sgMsh2	50362621	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	114	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.C2063T:p.A688V	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.09927316	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	241	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	201	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999986	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	59	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9720193	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	CGT	synonymous	NA	NA	NA	NA
M4	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	39	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	2	1	1	0.9783332	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	41	129	21	0.162790698	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	TAG	synonymous	NA	NA	NA	NA
M4	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	78	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	147	278	48	0.172661871	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999643	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M4	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	63	132	5	0.037878788	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	0.765248151	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr14	52287337	12A2p6	cell line	sgMsh2	52287337	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.287	37	200	36	0.18	exonic	Tox4	nonsynonymous SNV	Tox4:NM_023434:exon6:c.G616A:p.G206R	14qC2	chr14-7006943-52852156	4	2	2	0.99	4.379165722	NA	1	1	1	0.9756596	AGG	nonsynonymous	A	5	AAAAA	NA
M4	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	66	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	70	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	34	2	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.8834469	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	67	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	77	36	7	0.194444444	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.667933358	2	0.8581068	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	127	313	59	0.188498403	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9968224	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	55650373	12A2p6	cell line	sgMsh2	55650373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	56	2	0	0	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon1:c.A25C:p.T9P,Tssk4:NM_001253889:exon1:c.A25C:p.T9P,Tssk4:NM_027673:exon1:c.A25C:p.T9P"	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	2	1	1	0.992015	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	32	64	20	0.3125	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.672356757	1	0.006595782	AAC	synonymous	NA	NA	NA	NA
M4	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	37	9	0.243243243	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	52	28	8	0.285714286	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	CTT	synonymous	NA	NA	NA	NA
M4	chr14	55831705	12A2p6	cell line	sgMsh2	55831705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	30	1	0	0	exonic	Nfatc4	synonymous SNV	"Nfatc4:NM_001168346:exon7:c.T1926C:p.S642S,Nfatc4:NM_023699:exon7:c.T1926C:p.S642S"	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9635259	GTG	synonymous	NA	NA	NA	NA
M4	chr14	55866051	12A2p6	cell line	sgMsh2	55866051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	148	2	1	0.5	exonic	Nynrin	nonsynonymous SNV	Nynrin:NM_001040072:exon4:c.T2351C:p.V784A	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	138	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9998088	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	72	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	119	20	3	0.15	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr14	57808014	12A2p6	cell line	sgMsh2	57808014	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	116	73	6	0.082191781	exonic	Ska3	frameshift deletion	Ska3:NM_198605:exon8:c.1199delA:p.K400Rfs*30	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.955454339	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	157	192	2	0.010416667	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	191	8	0	0	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999974	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M4	chr14	64029911	12A2p6	cell line	sgMsh2	64029911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	42	0	0	NA	exonic	Rp1l1	nonsynonymous SNV	Rp1l1:NM_146246:exon4:c.C2945A:p.P982Q	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9818129	CCG	nonsynonymous	C	5	CCCCC	NA
M4	chr14	65931023	12A2p6	cell line	sgMsh2	65931023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	145	72	24	0.333333333	exonic	Scara3	nonsynonymous SNV	Scara3:NM_172604:exon5:c.C1144T:p.R382W	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	114	12111	2698	0.222772686	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	63	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M4	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	155	62	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.920067141	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	219	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9999901	CGG	synonymous	NA	NA	NA	NA
M4	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	78	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.8785656	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.149	107	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.659086558	2	0.9668886	TAT	synonymous	NA	NA	NA	NA
M4	chr14	69032369	12A2p6	cell line	sgMsh2	69032369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	101	18	4	0.222222222	exonic	Stc1	nonsynonymous SNV	Stc1:NM_009285:exon3:c.A397G:p.N133D	14qD2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr14	69796307	12A2p6	cell line	sgMsh2	69796307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	147	52	13	0.25	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon5:c.G1468A:p.V490I	14qD2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8039627	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr14	73282885	12A2p6	cell line	sgMsh2	73282885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	86	31	5	0.161290323	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon7:c.T683C:p.L228P	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	69	46	6	0.130434783	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8103276	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	140	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999458	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	128	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.7676782	CAG	synonymous	NA	NA	NA	NA
M4	chr14	75292284	12A2p6	cell line	sgMsh2	75292284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	108	52	15	0.288461538	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon3:c.G224A:p.R75K,Zc3h13:NM_026083:exon3:c.G224A:p.R75K"	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9991109	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr14	76095067	12A2p6	cell line	sgMsh2	76095067	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	181	94	22	0.234042553	exonic	Gpalpp1	synonymous SNV	Gpalpp1:NM_026177:exon7:c.T762C:p.D254D	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999953	CAT	synonymous	TCTT	8	TCTTTCTT	NA
M4	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	84	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	GTT	synonymous	NA	NA	NA	NA
M4	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	61	27	5	0.185185185	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	ATG	synonymous	NA	NA	NA	NA
M4	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	102	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9993064	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr14	88468805	12A2p6	cell line	sgMsh2	88468805	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	122	0	0	NA	exonic	Pcdh20	frameshift deletion	Pcdh20:NM_178685:exon3:c.1058delA:p.N353Mfs*47	14qE1	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	45	30	9	0.3	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	101607988	12A2p6	cell line	sgMsh2	101607988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	71	0	0	NA	exonic	Tbc1d4	nonsynonymous SNV	Tbc1d4:NM_001081278:exon1:c.T473C:p.V158A	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.62369936	2	0.9215254	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr14	103126690	12A2p6	cell line	sgMsh2	103126690	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	168	81	7	0.086419753	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon78:c.T13172A:p.L4391Q	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999898	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	215	74	14	0.189189189	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.9274072	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	61	0	0	NA	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	GCC	synonymous	NA	NA	NA	NA
M4	chr14	106107404	12A2p6	cell line	sgMsh2	106107404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	46	0	0	NA	exonic	Trim52	synonymous SNV	Trim52:NM_198601:exon1:c.T495C:p.R165R	14qE2.3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	GTC	synonymous	NA	NA	NA	NA
M4	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	103	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr14	110750707	12A2p6	cell line	sgMsh2	110750707	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	163	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.G1567A:p.D523N	14qE3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	0.756401352	2	0.7389554	TCA	nonsynonymous	NA	NA	NA	NA
M4	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	116	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	2	1	1	0.9997739	AAG	synonymous	NA	NA	NA	NA
M4	chr14	118534037	12A2p6	cell line	sgMsh2	118534037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	110	65	16	0.246153846	exonic	Abcc4	nonsynonymous SNV	"Abcc4:NM_001163676:exon20:c.T2416C:p.Y806H,Abcc4:NM_001033336:exon21:c.T2641C:p.Y881H,Abcc4:NM_001163675:exon21:c.T2512C:p.Y838H"	14qE4	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	139	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999425	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	91	7	4	0.571428571	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	227	370	78	0.210810811	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53294676-123299668	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	84	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	216	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	114	37	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M4	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	87	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.650239759	2	0.9366941	ATG	synonymous	A	5	AAAAA	NA
M4	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	10	2	0.2	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9956483	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	121	17	2	0.117647059	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.685626956	2	0.9537672	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr15	8202293	12A2p6	cell line	sgMsh2	8202293	A	-	Deletion	Strelka2;Vardict	2	0.2917	24	14	1	0.071428571	exonic	Cplane1	frameshift deletion	Cplane1:NM_001162906:exon19:c.3222delA:p.N1077Mfs*29	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M4	chr15	8228930	12A2p6	cell line	sgMsh2	8228930	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	87	18	6	0.333333333	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon34:c.A6659T:p.Q2220L	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr15	8295648	12A2p6	cell line	sgMsh2	8295648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	134	124	28	0.225806452	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon44:c.A7530C:p.E2510D,Nipbl:NM_201232:exon44:c.A7530C:p.E2510D"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.716590754	2	0.09673114	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	96	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	139	35	0.251798561	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	TAT	synonymous	NA	NA	NA	NA
M4	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	123	34	9	0.264705882	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.853716146	1	0.9633016	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	62	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	CTT	nonsynonymous	G	5	GGGGG	NA
M4	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	132	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.721014154	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr15	21492596	12A2p6	cell line	sgMsh2	21492596	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	105	0	0	NA	exonic	Cdh12	stopgain	Cdh12:NM_001008420:exon5:c.C700T:p.Q234X	15qA2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9986202	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr15	27848986	12A2p6	cell line	sgMsh2	27848986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	20	4	0.2	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon16:c.C2821A:p.Q941K	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9828461	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9988621	TTG	synonymous	NA	NA	NA	NA
M4	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	143	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999547	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	31297925	12A2p6	cell line	sgMsh2	31297925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	95	0	0	NA	exonic	Ankrd33b	nonsynonymous SNV	"Ankrd33b:NM_001357922:exon3:c.T115C:p.Y39H,Ankrd33b:NM_001164441:exon4:c.T685C:p.Y229H,Ankrd33b:NM_027496:exon4:c.T658C:p.Y220H,Ankrd33b:NM_001357923:exon5:c.T271C:p.Y91H"	15qB2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	19	727	51	0.070151307	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.09710617	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	189	61	16	0.262295082	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M4	chr15	35371970	12A2p6	cell line	sgMsh2	35371970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	111	31	4	0.129032258	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T10C:p.S4P	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.6982167	GTC	nonsynonymous	CGTA	8	CGTACGTA	NA
M4	chr15	35882975	12A2p6	cell line	sgMsh2	35882975	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	84	38	5	0.131578947	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon51:c.G9264T:p.T3088T	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	9.70E-08	CGC	synonymous	NA	NA	NA	NA
M4	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	88	29	10	0.344827586	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9169474	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	35910807	12A2p6	cell line	sgMsh2	35910807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	85	37	8	0.216216216	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon56:c.T10716C:p.H3572H	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.756401352	1	0.5422956	ATG	synonymous	NA	NA	NA	NA
M4	chr15	36162709	12A2p6	cell line	sgMsh2	36162709	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	195	0	0	NA	exonic	Fbxo43	synonymous SNV	"Fbxo43:NM_001081253:exon2:c.T351G:p.S117S,Fbxo43:NM_001368658:exon2:c.T492G:p.S164S"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999979	GAG	synonymous	NA	NA	NA	NA
M4	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	98	4195	1035	0.246722288	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M4	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	68	939	271	0.288604899	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr15	37981514	12A2p6	cell line	sgMsh2	37981514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	180	243	62	0.255144033	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon49:c.T7037C:p.M2346T,Ubr5:NM_001112721:exon49:c.T7019C:p.M2340T"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.999995	CAT	nonsynonymous	CTC	9	CTCCTCCTC	NA
M4	chr15	39675081	12A2p6	cell line	sgMsh2	39675081	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	63	4	1	0.25	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon2:c.A284C:p.N95T,Rims2:NM_001256383:exon22:c.A4079C:p.N1360T,Rims2:NM_001256382:exon23:c.A4145C:p.N1382T,Rims2:NM_053271:exon23:c.A4019C:p.N1340T"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	2	1	1	0.9947219	AAG	nonsynonymous	GGAA	8	GGAAGGAA	NA
M4	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	184	62	26	0.419354839	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9999616	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr15	42523589	12A2p6	cell line	sgMsh2	42523589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	110	0	0	NA	exonic	Angpt1	nonsynonymous SNV	"Angpt1:NM_001286062:exon2:c.A368G:p.H123R,Angpt1:NM_009640:exon2:c.A368G:p.H123R"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.774094951	1	0.5941983	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993781	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	47838514	12A2p6	cell line	sgMsh2	47838514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	141	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon31:c.C5172T:p.T1724T	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	AGG	synonymous	NA	NA	NA	NA
M4	chr15	48011196	12A2p6	cell line	sgMsh2	48011196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	149	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon14:c.G2003A:p.G668D	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9958113	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	134	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999225	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	2	0	0	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9106754	TAA	synonymous	NA	NA	NA	NA
M4	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	110	2	0	0	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr15	56668052	12A2p6	cell line	sgMsh2	56668052	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	210	3	2	0.666666667	exonic	Has2	synonymous SNV	Has2:NM_008216:exon4:c.T1266C:p.S422S	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
M4	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	62	294	74	0.25170068	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	99	1	1	1	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9991778	TGA	synonymous	NA	NA	NA	NA
M4	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	66	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr15	73210751	12A2p6	cell line	sgMsh2	73210751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	106	27	0.254716981	exonic	Ptk2	synonymous SNV	"Ptk2:NM_007982:exon30:c.T2856C:p.P952P,Ptk2:NM_001358045:exon32:c.T2997C:p.P999P,Ptk2:NM_001358046:exon33:c.T2904C:p.P968P"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	TAG	synonymous	NA	NA	NA	NA
M4	chr15	73229946	12A2p6	cell line	sgMsh2	73229946	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	71	134	6	0.044776119	exonic	Ptk2	frameshift deletion	"Ptk2:NM_007982:exon26:c.2414delC:p.P805Lfs*2,Ptk2:NM_001358045:exon27:c.2546delC:p.P849Lfs*2,Ptk2:NM_001358046:exon28:c.2453delC:p.P818Lfs*2"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	80	2	0	0	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	75757657	12A2p6	cell line	sgMsh2	75757657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	107	1	1	1	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.A2360G:p.Q787R	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9946398	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	65	16	0.246153846	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9872667	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	144	16	2	0.125	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	76172453	12A2p6	cell line	sgMsh2	76172453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	80	147	36	0.244897959	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.T13436C:p.M4479T,Plec:NM_201385:exon32:c.T13322C:p.M4441T,Plec:NM_201386:exon32:c.T13283C:p.M4428T,Plec:NM_201387:exon32:c.T12878C:p.M4293T,Plec:NM_201388:exon32:c.T12878C:p.M4293T,Plec:NM_201389:exon32:c.T13778C:p.M4593T,Plec:NM_201390:exon32:c.T13253C:p.M4418T,Plec:NM_201391:exon32:c.T13349C:p.M4450T,Plec:NM_201392:exon32:c.T12878C:p.M4293T,Plec:NM_201393:exon32:c.T13370C:p.M4457T,Plec:NM_201394:exon32:c.T13349C:p.M4450T,Plec:NM_001163540:exon33:c.T13793C:p.M4598T,Plec:NM_001163549:exon33:c.T13364C:p.M4455T,Plec:NM_001163542:exon34:c.T13487C:p.M4496T,Plec:NM_001164203:exon34:c.T12878C:p.M4293T"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.09889708	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	107	250	67	0.268	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9994775	GCG	synonymous	NA	NA	NA	NA
M4	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	29	163	39	0.239263804	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9597693	GTG	synonymous	NA	NA	NA	NA
M4	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.266	28	133	41	0.308270677	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.266	28	131	39	0.297709924	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	AGA	synonymous	NA	NA	NA	NA
M4	chr15	76504139	12A2p6	cell line	sgMsh2	76504139	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	33	10	0.303030303	exonic	Dgat1	nonsynonymous SNV	Dgat1:NM_010046:exon6:c.T577G:p.L193V	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.999944	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	83	9	1	0.111111111	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.769671551	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M4	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	164	132	9	0.068181818	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4	chr15	76623407	12A2p6	cell line	sgMsh2	76623407	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	134	192	50	0.260416667	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.A168T:p.E56D,Vps28:NM_025842:exon6:c.A282T:p.E94D"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9997183	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr15	76623440	12A2p6	cell line	sgMsh2	76623440	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	128	154	48	0.311688312	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.G135T:p.Q45H,Vps28:NM_025842:exon6:c.G249T:p.Q83H"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9997319	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	63	21	4	0.19047619	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	GGG	synonymous	NA	NA	NA	NA
M4	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	100	9	1	0.111111111	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	76891629	12A2p6	cell line	sgMsh2	76891629	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	88	49	10	0.204081633	exonic	Zfp7	frameshift deletion	"Zfp7:NM_001358816:exon5:c.1870delA:p.V626Cfs*3,Zfp7:NM_001358817:exon5:c.1867delA:p.V625Cfs*3,Zfp7:NM_001358818:exon5:c.1441delA:p.V483Cfs*3,Zfp7:NM_145916:exon5:c.1870delA:p.V626Cfs*3"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.977571338	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	167	347	78	0.224783862	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999891	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	55	2	0	0	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.716590754	2	0.000625494	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	76	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	CAG	synonymous	NA	NA	NA	NA
M4	chr15	78410352	12A2p6	cell line	sgMsh2	78410352	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	58	84	16	0.19047619	exonic	Mpst	nonsynonymous SNV	"Mpst:NM_001162492:exon2:c.A283G:p.T95A,Mpst:NM_001162493:exon2:c.A283G:p.T95A,Mpst:NM_138670:exon2:c.A283G:p.T95A"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.685626956	2	0.6620184	CAC	nonsynonymous	CACG	8	CACGCACG	NA
M4	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	61	1932	550	0.284679089	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	76	101	14	0.138613861	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr15	79726542	12A2p6	cell line	sgMsh2	79726542	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	102	26	2	0.076923077	exonic	Sun2	synonymous SNV	"Sun2:NM_194342:exon16:c.G1986A:p.Q662Q,Sun2:NM_001205345:exon17:c.G2082A:p.Q694Q,Sun2:NM_001205346:exon17:c.G2076A:p.Q692Q"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.994447	CCT	synonymous	NA	NA	NA	NA
M4	chr15	80374803	12A2p6	cell line	sgMsh2	80374803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	58	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon21:c.A3712G:p.T1238A	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9929049	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	160	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9999502	TAT	synonymous	NA	NA	NA	NA
M4	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	99	23	0.232323232	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	ATG	synonymous	NA	NA	NA	NA
M4	chr15	81776859	12A2p6	cell line	sgMsh2	81776859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	59	53	10	0.188679245	exonic	Zc3h7b	nonsynonymous SNV	Zc3h7b:NM_001081016:exon10:c.A898G:p.T300A	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.7260755	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	83800023	12A2p6	cell line	sgMsh2	83800023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	56	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon3:c.A245G:p.D82G,Mpped1:NM_001359132:exon3:c.A245G:p.D82G,Mpped1:NM_172610:exon3:c.A245G:p.D82G"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9816091	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	238	1	0	0	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	274	68	0.248175182	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.875833144	1	0.983789	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	180	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.999995	CTC	synonymous	NA	NA	NA	NA
M4	chr15	85251547	12A2p6	cell line	sgMsh2	85251547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	51	45	13	0.288888889	exonic	Fbln1	synonymous SNV	Fbln1:NM_001347088:exon15:c.A1806G:p.P602P	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.721014154	1	0.000727104	CAG	synonymous	NA	NA	NA	NA
M4	chr15	85862673	12A2p6	cell line	sgMsh2	85862673	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	48	16	0.333333333	exonic	Gtse1	nonsynonymous SNV	"Gtse1:NM_013882:exon3:c.A689C:p.N230T,Gtse1:NM_001168672:exon4:c.A689C:p.N230T"	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	40	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9783584	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	220	18	14	0.777777778	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	55	31	6	0.193548387	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.943139	GTA	synonymous	NA	NA	NA	NA
M4	chr15	89474797	12A2p6	cell line	sgMsh2	89474797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	74	37	5	0.135135135	exonic	Arsa	nonsynonymous SNV	Arsa:NM_009713:exon4:c.A665G:p.Y222C	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9949414	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	114	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9832021	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr15	91739359	12A2p6	cell line	sgMsh2	91739359	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	71	5	1	0.2	exonic	Lrrk2	nonsynonymous SNV	Lrrk2:NM_025730:exon25:c.C3445T:p.L1149F	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr15	92757697	12A2p6	cell line	sgMsh2	92757697	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	59	0	0	NA	exonic	Pdzrn4	synonymous SNV	"Pdzrn4:NM_001164594:exon7:c.G753A:p.E251E,Pdzrn4:NM_001164593:exon9:c.G1470A:p.E490E"	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	2	1	1	0.9933122	AGC	synonymous	NA	NA	NA	NA
M4	chr15	94345750	12A2p6	cell line	sgMsh2	94345750	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	136	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon14:c.T1997G:p.L666R,Adamts20:NM_177431:exon14:c.T1997G:p.L666R"	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999312	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	104	78	22	0.282051282	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CAC	synonymous	NA	NA	NA	NA
M4	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	46	50	9	0.18	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr15	97968638	12A2p6	cell line	sgMsh2	97968638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	145	121	34	0.280991736	exonic	Tmem106c	nonsynonymous SNV	"Tmem106c:NM_001252153:exon7:c.T626C:p.V209A,Tmem106c:NM_001356508:exon7:c.T626C:p.V209A,Tmem106c:NM_201359:exon7:c.T626C:p.V209A"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	86	107	24	0.224299065	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	GTA	synonymous	NA	NA	NA	NA
M4	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	97	126	21	0.166666667	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9933503	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	187	30	5	0.166666667	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9998017	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	86	15	3	0.2	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr15	98839329	12A2p6	cell line	sgMsh2	98839329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	121	38	5	0.131578947	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon49:c.A15885C:p.K5295N	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	99082279	12A2p6	cell line	sgMsh2	99082279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	59	38	8	0.210526316	exonic	Troap	nonsynonymous SNV	"Troap:NM_001162506:exon12:c.A1339G:p.N447D,Troap:NM_030159:exon12:c.A1339G:p.N447D"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr15	99719240	12A2p6	cell line	sgMsh2	99719240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	130	23	4	0.173913043	exonic	Gpd1	nonsynonymous SNV	Gpd1:NM_010271:exon3:c.T326C:p.L109S	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9997979	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	137	21	7	0.333333333	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999352	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	54	1	0	0	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr15	101694066	12A2p6	cell line	sgMsh2	101694066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	44	0	0	NA	exonic	Krt6a	synonymous SNV	Krt6a:NM_008476:exon1:c.T183C:p.G61G	15qF2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	0.738707753	1	0.000754806	CAC	synonymous	NA	NA	NA	NA
M4	chr15	101947866	12A2p6	cell line	sgMsh2	101947866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	258	1	0	0	exonic	Krt78	synonymous SNV	Krt78:NM_212487:exon9:c.T1509C:p.P503P	15qF2	chr15-3279130-102454328	4	2	2	0.99	4.379165722	NA	1	1	1	4.92E-08	CAG	synonymous	NA	NA	NA	NA
M4	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	78	15	3	0.2	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M4	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	169	23	5	0.217391304	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M4	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	120	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	145	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr16	3991954	12A2p6	cell line	sgMsh2	3991954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	56	21	6	0.285714286	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon5:c.T803C:p.L268P	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr16	4107512	12A2p6	cell line	sgMsh2	4107512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	96	45	9	0.2	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon19:c.A3617G:p.E1206G	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	33	5	1	0.2	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M4	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	30	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9635259	ATG	synonymous	NA	NA	NA	NA
M4	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	51	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.765248151	1	0.6975116	CAA	synonymous	NA	NA	NA	NA
M4	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	44	46	7	0.152173913	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	138	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	91	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9280235	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr16	10573360	12A2p6	cell line	sgMsh2	10573360	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	33	11	0.333333333	exonic	Clec16a	nonsynonymous SNV	"Clec16a:NM_001204229:exon6:c.A659G:p.N220S,Clec16a:NM_177562:exon6:c.A665G:p.N222S"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999718	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	145	148	28	0.189189189	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	ATG	synonymous	NA	NA	NA	NA
M4	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	176	221	52	0.235294118	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999936	CTA	synonymous	NA	NA	NA	NA
M4	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	85	295	55	0.186440678	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.685626956	2	0.8431921	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	125	133	41	0.308270677	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8913071	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	101	48	16	0.333333333	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M4	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	154	23	6	0.260869565	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9806576	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	115	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9981417	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	70	3	1	0.333333333	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	17141957	12A2p6	cell line	sgMsh2	17141957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	108	1	1	1	exonic	Ccdc116	synonymous SNV	"Ccdc116:NM_001306169:exon4:c.T867C:p.P289P,Ccdc116:NM_001373948:exon4:c.T867C:p.P289P,Ccdc116:NM_029779:exon4:c.T867C:p.P289P"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	TAG	synonymous	TAGG	8	TAGGTAGG	NA
M4	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	58	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9929049	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	161	48	12	0.25	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.853716146	1	0.9784864	CTC	synonymous	NA	NA	NA	NA
M4	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	79	3	1	0.333333333	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr16	17520564	12A2p6	cell line	sgMsh2	17520564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	44	150	28	0.186666667	exonic	Lztr1	nonsynonymous SNV	"Lztr1:NM_001331226:exon9:c.T650C:p.L217P,Lztr1:NM_001331227:exon9:c.T203C:p.L68P,Lztr1:NM_025808:exon9:c.T911C:p.L304P"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.78294175	1	0.762153	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	90	65	6	0.092307692	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	17807146	12A2p6	cell line	sgMsh2	17807146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	11	43	6	0.139534884	exonic	Scarf2	synonymous SNV	Scarf2:NM_153790:exon11:c.A2064G:p.K688K	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.8937328	AAC	synonymous	NA	NA	NA	NA
M4	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	49	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.46888037	2	0.7893484	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	164	729	160	0.219478738	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	CTG	synonymous	NA	NA	NA	NA
M4	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	77	12	3	0.25	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	63	3	1	0.333333333	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	118	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997992	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	141	216	55	0.25462963	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	27346894	12A2p6	cell line	sgMsh2	27346894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	131	0	0	NA	exonic	Ostn	nonsynonymous SNV	Ostn:NM_198112:exon4:c.A332G:p.K111R	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	AAG	nonsynonymous	A	5	AAAAA	NA
M4	chr16	32671419	12A2p6	cell line	sgMsh2	32671419	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	41	59	8	0.13559322	exonic	Tnk2	nonsynonymous SNV	"Tnk2:NM_001110147:exon8:c.C1139T:p.A380V,Tnk2:NM_016788:exon8:c.C1139T:p.A380V"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	121	15	7	0.466666667	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	244	1	0	0	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9999988	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	178	51	10	0.196078431	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.765248151	2	0.6874303	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	68	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.517537767	2	0.009442631	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	38	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	CTT	synonymous	NA	NA	NA	NA
M4	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	117	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9997869	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	35841541	12A2p6	cell line	sgMsh2	35841541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	133	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon13:c.A4123G:p.K1375E	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	115	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	GAT	synonymous	NA	NA	NA	NA
M4	chr16	36621028	12A2p6	cell line	sgMsh2	36621028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	64	1	0	0	exonic	Cd86	nonsynonymous SNV	Cd86:NM_019388:exon3:c.G76A:p.V26M	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	ACG	nonsynonymous	NA	NA	NA	NA
M4	chr16	36969312	12A2p6	cell line	sgMsh2	36969312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	128	0	0	NA	exonic	Fbxo40	nonsynonymous SNV	"Fbxo40:NM_001037321:exon2:c.T1435C:p.F479L,Fbxo40:NM_001358217:exon3:c.T1435C:p.F479L"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998893	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.15	43	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.663509958	2	0.5979916	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr16	43609697	12A2p6	cell line	sgMsh2	43609697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	75	5	0	0	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.T351C:p.T117T,Zbtb20:NM_019778:exon8:c.T570C:p.T190T,Zbtb20:NM_001285805:exon10:c.T570C:p.T190T"	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	CTC	synonymous	NA	NA	NA	NA
M4	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	223	18	1	0.055555556	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	TCT	synonymous	NA	NA	NA	NA
M4	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	189	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999971	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr16	44496409	12A2p6	cell line	sgMsh2	44496409	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	71	0	0	NA	exonic	Boc	nonsynonymous SNV	Boc:NM_172506:exon8:c.A1370C:p.K457T	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	224	110	26	0.236363636	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.9881486	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	49138724	12A2p6	cell line	sgMsh2	49138724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	92	0	0	NA	exonic	Myh15	synonymous SNV	Myh15:NM_001166210:exon24:c.A2958G:p.V986V	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	TAG	synonymous	AGTAG	10	AGTAGAGTAG	NA
M4	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	62	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9906822	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	174	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999928	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	177	491	148	0.301425662	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9999741	CAC	synonymous	NA	NA	NA	NA
M4	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	182	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999956	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	80	264	81	0.306818182	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	267	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	2.92E-08	CTG	synonymous	NA	NA	NA	NA
M4	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	203	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.880256544	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	247	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr16	59361648	12A2p6	cell line	sgMsh2	59361648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	269	0	0	NA	exonic	Olfr207;Olfr209	nonsynonymous SNV	"Olfr207:NM_001011792:exon1:c.A569G:p.D190G,Olfr209:NM_207551:exon1:c.A569G:p.D190G"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.650239759	2	0.9999897	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	59433483	12A2p6	cell line	sgMsh2	59433483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	201	0	0	NA	exonic	Gabrr3	nonsynonymous SNV	Gabrr3:NM_001081190:exon5:c.T562C:p.F188L	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999967	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	68	2	0	0	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9924704	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	45	3	0	0	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr16	63652282	12A2p6	cell line	sgMsh2	63652282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	129	0	0	NA	exonic	Epha3	nonsynonymous SNV	"Epha3:NM_001362452:exon5:c.T1239G:p.N413K,Epha3:NM_010140:exon5:c.T1239G:p.N413K"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.2125	80	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.93997244	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M4	chr16	66815326	12A2p6	cell line	sgMsh2	66815326	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	116	0	0	NA	exonic	Cadm2	nonsynonymous SNV	"Cadm2:NM_001145977:exon3:c.C347T:p.A116V,Cadm2:NM_001347247:exon3:c.C347T:p.A116V,Cadm2:NM_178721:exon4:c.C374T:p.A125V"	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997739	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr16	69861664	12A2p6	cell line	sgMsh2	69861664	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	exonic	Speer2	nonsynonymous SNV	Speer2:NM_173069:exon2:c.G112A:p.G38R	16qC2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	187	15	2	0.133333333	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999967	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	72742222	12A2p6	cell line	sgMsh2	72742222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	41	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon2:c.A152G:p.K51R	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr16	73027766	12A2p6	cell line	sgMsh2	73027766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	24	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon26:c.A4175G:p.H1392R	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9486338	CAC	nonsynonymous	GCC	9	GCCGCCGCC	NA
M4	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	53	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	CTG	synonymous	NA	NA	NA	NA
M4	chr16	73933776	12A2p6	cell line	sgMsh2	73933776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	199	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_175549:exon20:c.A2947G:p.T983A,Robo2:NM_001358491:exon21:c.A3028G:p.T1010A,Robo2:NM_001358492:exon21:c.A3028G:p.T1010A,Robo2:NM_001358493:exon21:c.A3028G:p.T1010A,Robo2:NM_001358494:exon21:c.A2959G:p.T987A"	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999984	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr16	73956550	12A2p6	cell line	sgMsh2	73956550	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	158	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_175549:exon16:c.A2438T:p.E813V,Robo2:NM_001358491:exon17:c.A2519T:p.E840V,Robo2:NM_001358492:exon17:c.A2519T:p.E840V,Robo2:NM_001358493:exon17:c.A2519T:p.E840V,Robo2:NM_001358494:exon17:c.A2450T:p.E817V"	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	79087489	12A2p6	cell line	sgMsh2	79087489	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	62	0	0	NA	exonic	Tmprss15	synonymous SNV	"Tmprss15:NM_008941:exon3:c.C304T:p.L102L,Tmprss15:NM_178855:exon3:c.C304T:p.L102L"	16qC3.2	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	AGA	synonymous	NA	NA	NA	NA
M4	chr16	81443212	12A2p6	cell line	sgMsh2	81443212	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	62	0	0	NA	exonic	Ncam2	frameshift deletion	"Ncam2:NM_001113208:exon5:c.560delA:p.G188Efs*24,Ncam2:NM_010954:exon5:c.560delA:p.G188Efs*24"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	GAAG	8	GAAGGAAG	-1
M4	chr16	85103214	12A2p6	cell line	sgMsh2	85103214	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	99	561	142	0.25311943	exonic	App	nonsynonymous SNV	"App:NM_001198823:exon3:c.G347C:p.R116P,App:NM_001198824:exon3:c.G347C:p.R116P,App:NM_001198825:exon3:c.G347C:p.R116P,App:NM_001198826:exon3:c.G347C:p.R116P,App:NM_007471:exon3:c.G347C:p.R116P"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993781	ACG	nonsynonymous	NA	NA	NA	NA
M4	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	115	495	114	0.23030303	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	53	13	0.245283019	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr16	88751510	12A2p6	cell line	sgMsh2	88751510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	119	0	0	NA	exonic	Krtap13	nonsynonymous SNV	Krtap13:NM_010671:exon1:c.A89G:p.Y30C	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.831599147	1	0.9167463	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	61	6	1	0.166666667	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.955454339	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M4	chr16	90944553	12A2p6	cell line	sgMsh2	90944553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	89	20	5	0.25	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon31:c.A3711G:p.P1237P,Synj1:NM_001164483:exon31:c.A3831G:p.P1277P"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9981543	GTG	synonymous	NA	NA	NA	NA
M4	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	147	14	1	0.071428571	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999643	CGC	synonymous	NA	NA	NA	NA
M4	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	113	120	26	0.216666667	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9995663	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M4	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.199	23	139	40	0.287769784	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.8813397	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr16	93752143	12A2p6	cell line	sgMsh2	93752143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	173	85	17	0.2	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon7:c.T570C:p.N190N,Dop1b:NM_027293:exon8:c.T924C:p.N308N"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999924	ATA	synonymous	NA	NA	NA	NA
M4	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	53	45	9	0.2	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9657232	GTA	synonymous	NA	NA	NA	NA
M4	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	151	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999718	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr16	96315804	12A2p6	cell line	sgMsh2	96315804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	144	0	0	NA	exonic	B3galt5	stopgain	"B3galt5:NM_001358390:exon3:c.C636A:p.C212X,B3galt5:NM_033149:exon3:c.C636A:p.C212X,B3galt5:NM_001122993:exon4:c.C636A:p.C212X,B3galt5:NM_001358389:exon4:c.C636A:p.C212X"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9996919	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	191	1	1	1	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4	chr17	3178204	12A2p6	cell line	sgMsh2	3178204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	33	121	19	0.157024793	exonic	Scaf8	nonsynonymous SNV	Scaf8:NM_134123:exon12:c.A1276G:p.K426E	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9693129	AAA	nonsynonymous	CGAAAG	13	CGAAAGCGAAAGC	NA
M4	chr17	5986071	12A2p6	cell line	sgMsh2	5986071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	73	50	10	0.2	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001113351:exon2:c.A59G:p.Y20C,Synj2:NM_001357667:exon2:c.A59G:p.Y20C,Synj2:NM_011523:exon2:c.A59G:p.Y20C,Synj2:NM_001113352:exon3:c.A314G:p.Y105C,Synj2:NM_001113353:exon3:c.A314G:p.Y105C"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	TAC	nonsynonymous	C	5	CCCCC	NA
M4	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	246	135	26	0.192592593	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	8757066	12A2p6	cell line	sgMsh2	8757066	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	71	0	0	NA	exonic	Pde10a	nonsynonymous SNV	Pde10a:NM_001290707:exon2:c.G202T:p.G68C	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	69	25	5	0.2	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.597158962	2	0.9422537	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	12967495	12A2p6	cell line	sgMsh2	12967495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	154	201	44	0.218905473	exonic	Wtap	synonymous SNV	"Wtap:NM_001113533:exon8:c.T1164C:p.N388N,Wtap:NM_001379058:exon8:c.T1164C:p.N388N"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999764	CAT	synonymous	TACATT	13	TACATTTACATTT	NA
M4	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	770	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.486573969	3	0.9748005	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	773	1	0	0	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.579465363	2	1.02E-09	CCT	synonymous	NA	NA	NA	NA
M4	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	57	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	102	96	25	0.260416667	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	CAT	synonymous	NA	NA	NA	NA
M4	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	219	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	229	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.884679944	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr17	18313241	12A2p6	cell line	sgMsh2	18313241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	198	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon4:c.T1406C:p.L469S	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999983	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	119	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.79178855	1	0.7189865	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.261	272	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	2.20E-08	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	275	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	1.85E-08	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	480	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	19773564	12A2p6	cell line	sgMsh2	19773564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	102	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon1:c.T202C:p.L68L	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.743131153	2	0.6250699	TTT	synonymous	NA	NA	NA	NA
M4	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.242	349	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	1.21E-09	GTA	synonymous	NA	NA	NA	NA
M4	chr17	19811802	12A2p6	cell line	sgMsh2	19811802	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	432	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A1837T:p.I613F	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	20041610	12A2p6	cell line	sgMsh2	20041610	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	157	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.G1257T:p.Q419H	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999803	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	173	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9997904	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	116	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997739	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	122	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr17	20268253	12A2p6	cell line	sgMsh2	20268253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	241	0	0	NA	exonic	Vmn2r106	nonsynonymous SNV	"Vmn2r106:NM_001104568:exon6:c.A1883G:p.Y628C,Vmn2r106:NM_001385160:exon6:c.A1871G:p.Y624C"	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	20582156	12A2p6	cell line	sgMsh2	20582156	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	159	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon4:c.A1456T:p.N486Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9994315	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	20776752	12A2p6	cell line	sgMsh2	20776752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T503C:p.M168T	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999984	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	198	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9997752	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	151	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999718	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	255	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.517537767	2	0.9653305	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	23607347	12A2p6	cell line	sgMsh2	23607347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	23	0	0	NA	exonic	Zscan10	nonsynonymous SNV	"Zscan10:NM_001033425:exon3:c.G617A:p.S206N,Zscan10:NM_001289481:exon3:c.G617A:p.S206N,Zscan10:NM_001289483:exon3:c.G5A:p.S2N,Zscan10:NM_001289484:exon3:c.G482A:p.S161N"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.945642	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	136	118	30	0.254237288	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.703320555	2	0.9450903	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	34	1	0	0	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.971036	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	24572817	12A2p6	cell line	sgMsh2	24572817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	156	18	4	0.222222222	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon15:c.T3477C:p.D1159D	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	ATG	synonymous	NA	NA	NA	NA
M4	chr17	24573905	12A2p6	cell line	sgMsh2	24573905	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	81	11	1	0.090909091	exonic	Pkd1	nonsynonymous SNV	Pkd1:NM_013630:exon15:c.C4565T:p.S1522F	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9981861	TCT	nonsynonymous	CTGG	8	CTGGCTGG	NA
M4	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	56	65	7	0.107692308	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9148783	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	60	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M4	chr17	25790563	12A2p6	cell line	sgMsh2	25790563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	67	39	10	0.256410256	exonic	Antkmt	synonymous SNV	"Antkmt:NM_001285982:exon5:c.T441C:p.P147P,Antkmt:NM_001357989:exon5:c.T441C:p.P147P,Antkmt:NM_145410:exon5:c.T675C:p.P225P"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9927736	TAG	synonymous	NA	NA	NA	NA
M4	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	57	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	26123626	12A2p6	cell line	sgMsh2	26123626	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	35	130	37	0.284615385	exonic	Mrpl28	nonsynonymous SNV	Mrpl28:NM_024227:exon1:c.C65T:p.A22V	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.972665	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	37	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9756596	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	31	2	0	0	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	9.76E-06	GAG	synonymous	NA	NA	NA	NA
M4	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	112	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997131	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	53	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	74	17	3	0.176470588	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	66	85	22	0.258823529	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	28644614	12A2p6	cell line	sgMsh2	28644614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	211	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon17:c.A2170G:p.T724A	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999975	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	136	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9897247	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	28899714	12A2p6	cell line	sgMsh2	28899714	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	40	0	0	NA	exonic	Bnip5	frameshift deletion	Bnip5:NM_172450:exon11:c.1743delT:p.F581Lfs*15	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	144	60	13	0.216666667	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	29342862	12A2p6	cell line	sgMsh2	29342862	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	44	166	41	0.246987952	exonic	Mtch1	nonsynonymous SNV	"Mtch1:NM_001347335:exon2:c.G367A:p.G123R,Mtch1:NM_001357762:exon2:c.G31A:p.G11R,Mtch1:NM_001357763:exon2:c.G31A:p.G11R,Mtch1:NM_019880:exon2:c.G367A:p.G123R"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	38	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M4	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	134	41	2	0.048780488	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	7.77E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	134	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.844869346	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.167	93	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.6133482	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	87	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.8579545	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	30936331	12A2p6	cell line	sgMsh2	30936331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	30	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon13:c.T1291C:p.C431R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9237035	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	104	27	7	0.259259259	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M4	chr17	32034457	12A2p6	cell line	sgMsh2	32034457	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	0	0	NA	exonic	Hsf2bp	nonsynonymous SNV	Hsf2bp:NM_028902:exon1:c.G36T:p.E12D	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr17	32056739	12A2p6	cell line	sgMsh2	32056739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	69	35	9	0.257142857	exonic	Rrp1b	nonsynonymous SNV	"Rrp1b:NM_001163734:exon10:c.A956T:p.Q319L,Rrp1b:NM_028244:exon13:c.A1259T:p.Q420L"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	90	43	7	0.162790698	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.703320555	2	8.59E-05	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	33935440	12A2p6	cell line	sgMsh2	33935440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	111	59	13	0.220338983	exonic	Rgl2	nonsynonymous SNV	Rgl2:NM_009059:exon14:c.T1589C:p.I530T	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	80	20	0.25	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9756596	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	34026901	12A2p6	cell line	sgMsh2	34026901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	141	102	27	0.264705882	exonic	H2-Ke6	nonsynonymous SNV	H2-Ke6:NM_013543:exon6:c.T595C:p.F199L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9980109	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	34042448	12A2p6	cell line	sgMsh2	34042448	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	35	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_001317722:exon3:c.C280A:p.P94T,Col11a2:NM_009926:exon3:c.C280A:p.P94T"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.972665	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr17	34381077	12A2p6	cell line	sgMsh2	34381077	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	113	0	0	NA	exonic	Btnl1	nonsynonymous SNV	Btnl1:NM_001111094:exon4:c.G553A:p.G185R	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	34445497	12A2p6	cell line	sgMsh2	34445497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	188	0	0	NA	exonic	BC051142	synonymous SNV	"BC051142:NM_001001177:exon10:c.C342T:p.T114T,BC051142:NM_001163855:exon14:c.C336T:p.T112T"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999969	CCC	synonymous	NA	NA	NA	NA
M4	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	28	16	8	0.5	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	67	11	1	0.090909091	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.0932181	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	34572515	12A2p6	cell line	sgMsh2	34572515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	69	10	3	0.3	exonic	Notch4	synonymous SNV	Notch4:NM_010929:exon10:c.T1635C:p.C545C	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9963014	GTG	synonymous	NA	NA	NA	NA
M4	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	51	19	7	0.368421053	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	GAG	nonsynonymous	C	5	CCCCC	NA
M4	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	93	4	0	0	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	GCT	synonymous	G	5	GGGGG	NA
M4	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	38	4	1	0.25	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	35	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.972665	TAG	synonymous	NA	NA	NA	NA
M4	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	159	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9999191	CAG	synonymous	NA	NA	NA	NA
M4	chr17	34876169	12A2p6	cell line	sgMsh2	34876169	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	162	31	0	0	exonic	C2	frameshift deletion	C2:NM_013484:exon5:c.721delC:p.Q241Rfs*3	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TGG	frameshift	TGGG	8	TGGGTGGG	-1
M4	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	54	71	19	0.267605634	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	35071654	12A2p6	cell line	sgMsh2	35071654	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	59	1	0	0	exonic	Ly6g6d	frameshift deletion	"Ly6g6d:NM_033478:exon3:c.299delA:p.N100Tfs*15,Ly6g6d:NM_001371027:exon4:c.272delA:p.N91Tfs*15,Ly6g6d:NM_001371028:exon5:c.263delA:p.N88Tfs*15"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr17	35078280	12A2p6	cell line	sgMsh2	35078280	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	1	0	0	exonic	Ly6g6e	nonsynonymous SNV	Ly6g6e:NM_027366:exon3:c.C400A:p.L134I	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9817559	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	45	37	7	0.189189189	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9847424	TAC	synonymous	NA	NA	NA	NA
M4	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	111	84	16	0.19047619	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	CAG	synonymous	NA	NA	NA	NA
M4	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	51	76	14	0.184210526	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.8592329	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	71	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.362718777	3	0.8649862	CAG	synonymous	NA	NA	NA	NA
M4	chr17	36671197	12A2p6	cell line	sgMsh2	36671197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	208	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon3:c.G511A:p.E171K	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.9424861	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	123	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	37623831	12A2p6	cell line	sgMsh2	37623831	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	282	0	0	NA	exonic	Olfr116	nonsynonymous SNV	Olfr116:NM_146632:exon1:c.C803T:p.T268I	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	1.26E-08	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Strelka2;Vardict	2	0.2222	405	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.982879418	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	422	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	1.03E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M4	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.284	178	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M4	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	364	1	0	0	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9998396	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.181	60	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	0.7981902	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	42503010	12A2p6	cell line	sgMsh2	42503010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	177	0	0	NA	exonic	Ptchd4	nonsynonymous SNV	"Ptchd4:NM_001355270:exon3:c.A1810G:p.T604A,Ptchd4:NM_028474:exon4:c.A1801G:p.T601A"	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999874	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	38	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	210	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999992	AGG	synonymous	NA	NA	NA	NA
M4	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	67	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	116	42	7	0.166666667	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997739	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	129	82	27	0.329268293	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	13	32	9	0.28125	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.09421058	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	102	33	6	0.181818182	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	AGG	synonymous	NA	NA	NA	NA
M4	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	83	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr17	46321655	12A2p6	cell line	sgMsh2	46321655	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	108	7	0	0	exonic	Abcc10	frameshift deletion	"Abcc10:NM_145140:exon4:c.1653delC:p.A552Qfs*31,Abcc10:NM_001347396:exon5:c.1776delC:p.A593Qfs*31,Abcc10:NM_170680:exon5:c.1776delC:p.A593Qfs*31"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M4	chr17	46323357	12A2p6	cell line	sgMsh2	46323357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	55	10	2	0.2	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon2:c.A1483G:p.T495A,Abcc10:NM_001347396:exon3:c.A1606G:p.T536A,Abcc10:NM_170680:exon3:c.A1606G:p.T536A"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	86	85	21	0.247058824	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr17	46657444	12A2p6	cell line	sgMsh2	46657444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	117	61	12	0.196721311	exonic	Cul7	nonsynonymous SNV	Cul7:NM_025611:exon11:c.A2335G:p.M779V	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.09759882	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	46661447	12A2p6	cell line	sgMsh2	46661447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	138	45	8	0.177777778	exonic	Cul7	nonsynonymous SNV	Cul7:NM_025611:exon20:c.T3736C:p.Y1246H	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	49071098	12A2p6	cell line	sgMsh2	49071098	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	58	0	0	NA	exonic	Lrfn2	synonymous SNV	Lrfn2:NM_027452:exon2:c.C1206A:p.S402S	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9929049	CCA	synonymous	NA	NA	NA	NA
M4	chr17	50283138	12A2p6	cell line	sgMsh2	50283138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Dazl	nonsynonymous SNV	"Dazl:NM_001277863:exon9:c.A773G:p.D258G,Dazl:NM_010021:exon10:c.A824G:p.D275G"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9929701	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	60	39	0	0	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9912289	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	50736151	12A2p6	cell line	sgMsh2	50736151	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	45	20	7	0.35	exonic	Tbc1d5	frameshift deletion	"Tbc1d5:NM_001285993:exon22:c.2242delG:p.A748Pfs*32,Tbc1d5:NM_028162:exon22:c.2242delG:p.A748Pfs*32,Tbc1d5:NM_001285991:exon23:c.2308delG:p.A770Pfs*32"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.94660754	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4	chr17	50968251	12A2p6	cell line	sgMsh2	50968251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	167	28	2	0.071428571	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon5:c.T215C:p.V72A,Tbc1d5:NM_001285993:exon5:c.T215C:p.V72A,Tbc1d5:NM_028162:exon5:c.T215C:p.V72A"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999891	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	52839141	12A2p6	cell line	sgMsh2	52839141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	152	0	0	NA	exonic	Kcnh8	synonymous SNV	Kcnh8:NM_001031811:exon7:c.T1056C:p.S352S	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999735	GTA	synonymous	NA	NA	NA	NA
M4	chr17	53462611	12A2p6	cell line	sgMsh2	53462611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	157	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon1:c.T669C:p.D223D	17qC	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999803	CAT	synonymous	NA	NA	NA	NA
M4	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	212	44	0.20754717	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9417281	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr17	56353539	12A2p6	cell line	sgMsh2	56353539	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	214	23	3	0.130434783	exonic	Kdm4b	nonsynonymous SNV	"Kdm4b:NM_001357909:exon4:c.G332A:p.R111H,Kdm4b:NM_172132:exon4:c.G332A:p.R111H"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999993	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	72	30	5	0.166666667	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9949192	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	56617892	12A2p6	cell line	sgMsh2	56617892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	89	157	45	0.286624204	exonic	Lonp1	nonsynonymous SNV	Lonp1:NM_028782:exon10:c.G1514A:p.G505D	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.676780157	2	0.8882725	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	1	1	1	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9956483	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr17	56705553	12A2p6	cell line	sgMsh2	56705553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	68	147	30	0.204081633	exonic	Ranbp3	synonymous SNV	"Ranbp3:NM_001252467:exon6:c.T412C:p.L138L,Ranbp3:NM_027933:exon8:c.T571C:p.L191L,Ranbp3:NM_001252466:exon9:c.T772C:p.L258L"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	CTT	synonymous	NA	NA	NA	NA
M4	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	75	3	2	0.666666667	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	69	23	3	0.130434783	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	179	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9569741	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	126	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9961013	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	77	1088	245	0.225183824	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	TAG	synonymous	NA	NA	NA	NA
M4	chr17	66037583	12A2p6	cell line	sgMsh2	66037583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	95	12	6	0.5	exonic	Ankrd12	nonsynonymous SNV	Ankrd12:NM_001025572:exon5:c.A361G:p.T121A	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr17	66380313	12A2p6	cell line	sgMsh2	66380313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	92	136	29	0.213235294	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon5:c.A1597G:p.K533E,Mtcl1:NM_172963:exon5:c.A1597G:p.K533E"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	25	31	8	0.258064516	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9514674	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M4	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	78	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9978322	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M4	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	113	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8067591	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	67768409	12A2p6	cell line	sgMsh2	67768409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	49	0	0	NA	exonic	Lama1	stopgain	Lama1:NM_008480:exon22:c.G3120A:p.W1040X	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	67775828	12A2p6	cell line	sgMsh2	67775828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	52	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon28:c.C4080T:p.G1360G	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	GCG	synonymous	NA	NA	NA	NA
M4	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	21	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9391504	CTG	synonymous	NA	NA	NA	NA
M4	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Strelka2;Vardict	2	0.1724	29	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.762594112	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr17	73830095	12A2p6	cell line	sgMsh2	73830095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	45	0	0	NA	exonic	Ehd3	nonsynonymous SNV	Ehd3:NM_020578:exon6:c.G1258T:p.G420C	17qE2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9934103	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr17	74625239	12A2p6	cell line	sgMsh2	74625239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	26	0	0	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon37:c.G7584T:p.K2528N	17qE2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr17	74724715	12A2p6	cell line	sgMsh2	74724715	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	144	98	27	0.275510204	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon4:c.G506A:p.R169H	17qE2	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	58	45	15	0.333333333	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9770243	GTG	synonymous	NA	NA	NA	NA
M4	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	108	67	16	0.23880597	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.6338229	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	117	67	15	0.223880597	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997869	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr17	80217259	12A2p6	cell line	sgMsh2	80217259	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	141	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.A1346G:p.Y449C	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr17	80547702	12A2p6	cell line	sgMsh2	80547702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	244	0	0	NA	exonic	Cdkl4	synonymous SNV	"Cdkl4:NM_001033443:exon5:c.A444G:p.A148A,Cdkl4:NM_001360143:exon5:c.A444G:p.A148A,Cdkl4:NM_001360144:exon5:c.A444G:p.A148A"	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	GTG	synonymous	NA	NA	NA	NA
M4	chr17	81445513	12A2p6	cell line	sgMsh2	81445513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	102	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon3:c.G1880T:p.R627L,Slc8a1:NM_001286684:exon3:c.G1880T:p.R627L,Slc8a1:NM_011406:exon3:c.G1880T:p.R627L"	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	ACG	nonsynonymous	NA	NA	NA	NA
M4	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	123	53	9	0.169811321	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	125	62	13	0.209677419	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M4	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	138	70	8	0.114285714	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9999381	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	84566101	12A2p6	cell line	sgMsh2	84566101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	3	0	0	exonic	Plekhh2	synonymous SNV	"Plekhh2:NM_001357986:exon8:c.T813C:p.G271G,Plekhh2:NM_001357987:exon8:c.T813C:p.G271G,Plekhh2:NM_177606:exon8:c.T813C:p.G271G"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	2	1	1	0.9983894	GTG	synonymous	ATGG	8	ATGGATGG	NA
M4	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	81	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9747541	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	56	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9816091	CTC	synonymous	NA	NA	NA	NA
M4	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	54	6	1	0.166666667	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	9.61E-07	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.294	79	15	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	11.82050905	8.82050905	3	0.99	4.379165722	NA	4	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M4	chr17	87689082	12A2p6	cell line	sgMsh2	87689082	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	536	86	1	0.011627907	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon7:c.G1217A:p.R406Q	17qE4	chr17-87672302-87723786	11.82050905	8.82050905	3	0.99	4.379165722	NA	1	0.446763372	3	0.9999661	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr17	91088096	12A2p6	cell line	sgMsh2	91088096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	12	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon1:c.A631G:p.S211G,Nrxn1:NM_020252:exon2:c.A631G:p.S211G,Nrxn1:NM_177284:exon2:c.A631G:p.S211G"	17qE5	chr17-87745782-94740433	4	2	2	0.99	4.379165722	NA	2	1	1	0.0993896	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	146	147	28	0.19047619	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr18	4340650	12A2p6	cell line	sgMsh2	4340650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	100	1	0	0	exonic	Map3k8	synonymous SNV	Map3k8:NM_007746:exon4:c.T663C:p.S221S	18qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M4	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	62	8	4	0.5	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	165	146	23	0.157534247	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999878	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M4	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	73	162	24	0.148148148	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr18	10499920	12A2p6	cell line	sgMsh2	10499920	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	88	4	2	0.5	exonic	Greb1l	nonsynonymous SNV	Greb1l:NM_001083628:exon9:c.A986G:p.H329R	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9169474	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	116	1	0	0	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9701866	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	130	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	15398152	12A2p6	cell line	sgMsh2	15398152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	142	0	0	NA	exonic	Aqp4	nonsynonymous SNV	"Aqp4:NM_001308641:exon3:c.A485G:p.D162G,Aqp4:NM_001308647:exon3:c.A485G:p.D162G,Aqp4:NM_009700:exon3:c.A551G:p.D184G,Aqp4:NM_001308642:exon4:c.A485G:p.D162G,Aqp4:NM_001308643:exon4:c.A485G:p.D162G,Aqp4:NM_001308644:exon4:c.A485G:p.D162G,Aqp4:NM_001308645:exon5:c.A485G:p.D162G,Aqp4:NM_001308646:exon6:c.A485G:p.D162G"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999519	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr18	16648572	12A2p6	cell line	sgMsh2	16648572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	136	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon4:c.T461C:p.L154P	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9990678	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr18	20340318	12A2p6	cell line	sgMsh2	20340318	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	273	0	0	NA	exonic	Dsg1a	nonsynonymous SNV	Dsg1a:NM_010079:exon15:c.C2447A:p.P816Q	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9999996	CCA	nonsynonymous	CACC	10	CACCCACCCA	NA
M4	chr18	20340838	12A2p6	cell line	sgMsh2	20340838	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.231	352	0	0	NA	exonic	Dsg1a	frameshift insertion	Dsg1a:NM_010079:exon15:c.2968dupG:p.V992Gfs*10	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAG	frameshift	G	5	GGGGG	1
M4	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	138	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.999939	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr18	20850966	12A2p6	cell line	sgMsh2	20850966	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	193	85	29	0.341176471	exonic	Trappc8	nonsynonymous SNV	"Trappc8:NM_001361188:exon14:c.T1949A:p.L650H,Trappc8:NM_001379370:exon14:c.T1991A:p.L664H,Trappc8:NM_029491:exon14:c.T1994A:p.L665H,Trappc8:NM_177038:exon14:c.T1994A:p.L665H"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999977	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr18	21129162	12A2p6	cell line	sgMsh2	21129162	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	94	15	0	0	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon6:c.T2594C:p.I865T	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.243286985	3	0.9994847	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	21148201	12A2p6	cell line	sgMsh2	21148201	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	210	18	3	0.166666667	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1097C:p.N366T	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.424646373	3	0.9896534	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	133	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	25090192	12A2p6	cell line	sgMsh2	25090192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	81	4	2	0.5	exonic	Fhod3	nonsynonymous SNV	"Fhod3:NM_001289654:exon16:c.T2141C:p.V714A,Fhod3:NM_001289655:exon17:c.T2498C:p.V833A,Fhod3:NM_175276:exon18:c.T2594C:p.V865A"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	79	6	1	0.166666667	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	20	18	4	0.222222222	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9355164	GGG	synonymous	NA	NA	NA	NA
M4	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	68	30	5	0.166666667	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.9960754	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	72	37	15	0.405405405	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	114	55	15	0.272727273	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9993461	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	137	35	0.255474453	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	TAC	synonymous	T	5	TTTTT	NA
M4	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	116	694	170	0.244956772	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.636969559	2	0.9895555	ATT	synonymous	NA	NA	NA	NA
M4	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	85	451	96	0.21286031	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	36947361	12A2p6	cell line	sgMsh2	36947361	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	242	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.T1155G:p.S385S	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
M4	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	264	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	3.47E-08	ATT	synonymous	ATT	9	ATTATTATT	NA
M4	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	159	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr18	37297069	12A2p6	cell line	sgMsh2	37297069	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	232	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.C2094A:p.A698A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	CCT	synonymous	NA	NA	NA	NA
M4	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.25	97	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992995	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	208	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9999947	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	189	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999971	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr18	37356949	12A2p6	cell line	sgMsh2	37356949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	116	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.T1679C:p.V560A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.9997739	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	91	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	ATT	nonsynonymous	T	5	TTTTT	NA
M4	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	89	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988726	CAG	synonymous	NA	NA	NA	NA
M4	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	242	3	0	0	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	252	288	48	0.166666667	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	41	41	14	0.341463415	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.9807187	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	129	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9997867	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	GTT	nonsynonymous	T	5	TTTTT	NA
M4	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	74	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	129	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr18	44395916	12A2p6	cell line	sgMsh2	44395916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	225	33	8	0.242424242	exonic	Dcp2	nonsynonymous SNV	Dcp2:NM_027490:exon2:c.A97G:p.I33V	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	93	17	6	0.352941176	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.698897156	2	8.33E-05	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	127	1	0	0	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9874314	AAG	synonymous	NA	NA	NA	NA
M4	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.3151	73	3	0	0	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M4	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	279	696	145	0.208333333	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	1.48E-08	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr18	46742017	12A2p6	cell line	sgMsh2	46742017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	38	65	12	0.184615385	exonic	Ap3s1	nonsynonymous SNV	"Ap3s1:NM_001303015:exon1:c.T5C:p.I2T,Ap3s1:NM_009681:exon1:c.T5C:p.I2T"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	2	1	1	0.9770344	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	106	35	6	0.171428571	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	36	60	13	0.216666667	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	CGA	synonymous	NA	NA	NA	NA
M4	chr18	54898451	12A2p6	cell line	sgMsh2	54898451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	32	10	0.3125	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon4:c.T1138C:p.S380P,Zfp608:NM_175751:exon5:c.T2416C:p.S806P"	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9928587	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	73	12	2	0.166666667	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9857342	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	201	29	0.144278607	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.769671551	1	0.6630718	CTA	synonymous	NA	NA	NA	NA
M4	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	83	153	31	0.202614379	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr18	58048618	12A2p6	cell line	sgMsh2	58048618	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	87	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon44:c.A5570C:p.N1857T	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	59410019	12A2p6	cell line	sgMsh2	59410019	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	146	62	0	0	exonic	Chsy3	nonsynonymous SNV	Chsy3:NM_001081328:exon3:c.T2228C:p.V743A	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999621	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	107	28	0.261682243	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9640401	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr18	61746824	12A2p6	cell line	sgMsh2	61746824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	87	16	0	0	exonic	Afap1l1	nonsynonymous SNV	Afap1l1:NM_178928:exon9:c.A974G:p.E325G	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	78	117	23	0.196581197	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.63254616	2	0.9348063	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	148	36	0.243243243	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	TTT	nonsynonymous	T	5	TTTTT	NA
M4	chr18	67619331	12A2p6	cell line	sgMsh2	67619331	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	65	21	6	0.285714286	exonic	Cep76	nonsynonymous SNV	"Cep76:NM_001081073:exon12:c.A1883C:p.Q628P,Cep76:NM_001357523:exon12:c.A1349C:p.Q450P"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	90	48	10	0.208333333	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	TTT	synonymous	NA	NA	NA	NA
M4	chr18	67834813	12A2p6	cell line	sgMsh2	67834813	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	159	62	14	0.225806452	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon17:c.T2367G:p.G789G	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	GTG	synonymous	NA	NA	NA	NA
M4	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997131	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	107	65	19	0.292307692	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9938036	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	45	3	1	0.333333333	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.667933358	2	0.6049187	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	80291678	12A2p6	cell line	sgMsh2	80291678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	78	20	5	0.25	exonic	Slc66a2	nonsynonymous SNV	"Slc66a2:NM_001164420:exon5:c.G657T:p.Q219H,Slc66a2:NM_001164421:exon5:c.G657T:p.Q219H,Slc66a2:NM_001164422:exon5:c.G657T:p.Q219H,Slc66a2:NM_025861:exon6:c.G711T:p.Q237H"	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr18	82657008	12A2p6	cell line	sgMsh2	82657008	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	26	4	0.153846154	exonic	Zfp236	nonsynonymous SNV	"Zfp236:NM_177832:exon8:c.C1214A:p.P405H,Zfp236:NM_001374229:exon9:c.C1358A:p.P453H"	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr18	84094509	12A2p6	cell line	sgMsh2	84094509	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	71	50	12	0.24	exonic	Zadh2	nonsynonymous SNV	Zadh2:NM_146090:exon2:c.G309T:p.E103D	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	AGG	nonsynonymous	GGT	8	GGTGGTGG	NA
M4	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	121	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	103	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9976856	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr18	89012979	12A2p6	cell line	sgMsh2	89012979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	107	19	3	0.157894737	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1813C:p.S605P	18qE4	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	166	173	24	0.138728324	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	3392164	12A2p6	cell line	sgMsh2	3392164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	85	0	0	NA	exonic	Tesmin	nonsynonymous SNV	"Tesmin:NM_001039657:exon2:c.A446G:p.Q149R,Tesmin:NM_001039658:exon2:c.A446G:p.Q149R"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	4262505	12A2p6	cell line	sgMsh2	4262505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	43	129	25	0.19379845	exonic	Ssh3	nonsynonymous SNV	"Ssh3:NM_001356620:exon14:c.G1796T:p.S599I,Ssh3:NM_001374687:exon14:c.G1811T:p.S604I,Ssh3:NM_198113:exon14:c.G1799T:p.S600I"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr19	4612474	12A2p6	cell line	sgMsh2	4612474	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	66	42	7	0.166666667	exonic	Lrfn4	nonsynonymous SNV	Lrfn4:NM_153388:exon3:c.T1514G:p.L505R	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAG	nonsynonymous	G	5	GGGGG	NA
M4	chr19	4619134	12A2p6	cell line	sgMsh2	4619134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	137	52	12	0.230769231	exonic	Pcx	nonsynonymous SNV	"Pcx:NM_008797:exon14:c.T2159C:p.L720P,Pcx:NM_001162946:exon15:c.T2162C:p.L721P"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.654	70	1	1	1	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	136	1	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	157	2	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	46	3	1	0.333333333	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M4	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	258	3	1	0.333333333	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	270	45	4	0.088888889	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	4840880	12A2p6	cell line	sgMsh2	4840880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	221	0	0	NA	exonic	Ccdc87	nonsynonymous SNV	Ccdc87:NM_207268:exon1:c.T1399C:p.Y467H	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	120	2	0	0	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	5098214	12A2p6	cell line	sgMsh2	5098214	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	51	1	0	0	exonic	Cnih2	nonsynonymous SNV	Cnih2:NM_009920:exon1:c.G50A:p.C17Y	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr19	5607862	12A2p6	cell line	sgMsh2	5607862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	208	132	30	0.227272727	exonic	Kat5	nonsynonymous SNV	"Kat5:NM_001362370:exon5:c.A61G:p.I21V,Kat5:NM_001199248:exon6:c.A637G:p.I213V,Kat5:NM_001199249:exon6:c.A637G:p.I213V,Kat5:NM_001362371:exon6:c.A61G:p.I21V,Kat5:NM_001199247:exon7:c.A538G:p.I180V,Kat5:NM_001362372:exon7:c.A793G:p.I265V,Kat5:NM_178637:exon8:c.A694G:p.I232V"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	135	97	19	0.195876289	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	54	55	18	0.327272727	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	75	199	74	0.371859296	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr19	5758846	12A2p6	cell line	sgMsh2	5758846	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	114	180	19	0.105555556	exonic	Scyl1	synonymous SNV	"Scyl1:NM_001361921:exon16:c.A2199T:p.P733P,Scyl1:NM_001361922:exon16:c.A2247T:p.P749P,Scyl1:NM_023912:exon16:c.A2250T:p.P750P"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	synonymous	GTCTGG	12	GTCTGGGTCTGG	NA
M4	chr19	5943565	12A2p6	cell line	sgMsh2	5943565	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	81	118	15	0.127118644	exonic	Pola2	nonsynonymous SNV	"Pola2:NM_001164057:exon14:c.A1343C:p.E448A,Pola2:NM_008893:exon14:c.A1343C:p.E448A"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	52	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr19	5985928	12A2p6	cell line	sgMsh2	5985928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	70	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon1:c.A213G:p.I71M	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	5986075	12A2p6	cell line	sgMsh2	5986075	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	49	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon1:c.C66A:p.A22A	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M4	chr19	6050339	12A2p6	cell line	sgMsh2	6050339	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	225	145	2	0.013793103	exonic	Syvn1	frameshift deletion	"Syvn1:NM_001164709:exon10:c.839delC:p.E282Rfs*17,Syvn1:NM_028769:exon10:c.839delC:p.E282Rfs*17"	19qA	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr19	6115532	12A2p6	cell line	sgMsh2	6115532	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	88	4	0	0	exonic	Naaladl1	nonsynonymous SNV	Naaladl1:NM_001009546:exon18:c.C2215A:p.L739M	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.672356757	2	0.895881	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	34	18	7	0.388888889	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.971036	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	74	2	0	0	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.62369936	2	0.9328237	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	97	103	27	0.262135922	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.805058749	1	0.8080644	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Vardict	2	0.08	60	68	10	0.147058824	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.353871977	3	0.809464	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	6976602	12A2p6	cell line	sgMsh2	6976602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	264	229	29	0.126637555	exonic	Ppp1r14b	nonsynonymous SNV	Ppp1r14b:NM_008889:exon2:c.A317G:p.D106G	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.521961167	2	0.9787139	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	8764541	12A2p6	cell line	sgMsh2	8764541	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	236	195	35	0.179487179	exonic	Nxf1	nonsynonymous SNV	"Nxf1:NM_001276704:exon9:c.G838A:p.D280N,Nxf1:NM_016813:exon9:c.G838A:p.D280N"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.597158962	2	0.9999748	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	278	483	158	0.327122153	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	1.57E-08	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.535	42	12	4	0.333333333	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	4	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr19	8825025	12A2p6	cell line	sgMsh2	8825025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.155	234	747	125	0.167336011	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon7:c.T1255C:p.F419L	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.685626956	2	0.9992862	CTT	nonsynonymous	T	5	TTTTT	NA
M4	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	127	684	100	0.14619883	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.552924965	2	0.9887861	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	8928628	12A2p6	cell line	sgMsh2	8928628	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	135	43	4	0.093023256	exonic	Rom1	nonsynonymous SNV	Rom1:NM_009073:exon1:c.G546T:p.W182C	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.667933358	2	0.9864	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr19	8940646	12A2p6	cell line	sgMsh2	8940646	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	56	81	14	0.172839506	exonic	Eml3	synonymous SNV	"Eml3:NM_001374671:exon20:c.C2325A:p.T775T,Eml3:NM_144872:exon20:c.C2328A:p.T776T"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.999688336	1	0.9919723	CCT	synonymous	NA	NA	NA	NA
M4	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	108	46	6	0.130434783	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.676780157	2	0.9445384	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	9000221	12A2p6	cell line	sgMsh2	9000221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	81	562	86	0.153024911	exonic	Ahnak	nonsynonymous SNV	"Ahnak:NM_001039959:exon3:c.A122G:p.N41S,Ahnak:NM_001286518:exon3:c.A122G:p.N41S,Ahnak:NM_009643:exon3:c.A122G:p.N41S"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.526384567	2	0.9389396	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	225	87	0.386666667	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.972665	GTC	synonymous	NA	NA	NA	NA
M4	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	271	394	53	0.134517766	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.47772717	3	0.6994928	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	226	457	83	0.181619256	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.818328948	1	0.09164308	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	10593469	12A2p6	cell line	sgMsh2	10593469	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	173	41	8	0.195121951	exonic	Tkfc	nonsynonymous SNV	Tkfc:NM_145496:exon14:c.G1446A:p.M482I	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.721014154	2	0.9561328	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	54	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.93776074	1	0.9751001	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	10860377	12A2p6	cell line	sgMsh2	10860377	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	27	58	8	0.137931034	exonic	Tmem132a	nonsynonymous SNV	"Tmem132a:NM_001378918:exon9:c.C1571T:p.A524V,Tmem132a:NM_133804:exon9:c.C1568T:p.A523V"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.915643742	1	0.9162576	AGC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M4	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	122	203	46	0.226600985	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.63254616	2	0.9934283	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	108	207	87	0.420289855	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9996359	GTA	synonymous	NA	NA	NA	NA
M4	chr19	12651313	12A2p6	cell line	sgMsh2	12651313	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	219	5	0	0	exonic	Glyat	nonsynonymous SNV	Glyat:NM_145935:exon6:c.G573T:p.E191D	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.659086558	2	0.9997912	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr19	12675042	12A2p6	cell line	sgMsh2	12675042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	284	0	0	NA	exonic	Olfr1442	nonsynonymous SNV	Olfr1442:NM_146697:exon1:c.T836G:p.V279G	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.601582362	2	0.9999973	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr19	12890381	12A2p6	cell line	sgMsh2	12890381	A	G	SNV	Mutect2;MuSe;Vardict	3	0.1	404	0	0	NA	exonic	Olfr1446	synonymous SNV	Olfr1446:NM_146704:exon1:c.T195C:p.G65G	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.442339972	3	0.9996422	TAC	synonymous	NA	NA	NA	NA
M4	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	457	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.659086558	2	5.14E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	372	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.659086558	2	0.9999998	TTG	synonymous	NA	NA	NA	NA
M4	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	241	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.62369936	NA	NA	CTA	frameshift	NA	NA	NA	-1
M4	chr19	13146604	12A2p6	cell line	sgMsh2	13146604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	197	0	0	NA	exonic	Olfr1459	synonymous SNV	Olfr1459:NM_146689:exon1:c.C54T:p.D18D	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.526384567	2	0.9768437	AGT	synonymous	NA	NA	NA	NA
M4	chr19	13165670	12A2p6	cell line	sgMsh2	13165670	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	182	0	0	NA	exonic	Olfr1461	nonsynonymous SNV	Olfr1461:NM_146302:exon1:c.T655C:p.Y219H	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.78736515	1	0.5988813	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	516	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.570618564	2	0.9999998	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M4	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	626	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.579465363	2	2.51E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	266	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.756401352	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	345	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.636969559	2	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	13919797	12A2p6	cell line	sgMsh2	13919797	A	G	SNV	Mutect2;Vardict	2	0.023	423	0	0	NA	exonic	Olfr1505	nonsynonymous SNV	Olfr1505:NM_001011850:exon1:c.A776G:p.Y259C	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.101738194	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	14466592	12A2p6	cell line	sgMsh2	14466592	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	81	42	6	0.142857143	exonic	Tle4	nonsynonymous SNV	"Tle4:NM_001302950:exon10:c.C821A:p.S274Y,Tle4:NM_001302947:exon11:c.C896A:p.S299Y,Tle4:NM_001302951:exon11:c.C890A:p.S297Y,Tle4:NM_011600:exon11:c.C893A:p.S298Y"	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.690050356	2	0.8057593	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	217	408	59	0.144607843	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.747554552	2	0.921996	CGT	nonsynonymous	NA	NA	NA	NA
M4	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	329	96	11	0.114583333	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.47330377	3	0.8865467	TAC	synonymous	NA	NA	NA	NA
M4	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	49	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.769671551	1	0.7166182	AAG	synonymous	NA	NA	NA	NA
M4	chr19	18679119	12A2p6	cell line	sgMsh2	18679119	A	G	SNV	Mutect2;MuSe;Vardict	3	0.086	271	2	0	0	exonic	Carnmt1	nonsynonymous SNV	"Carnmt1:NM_001377051:exon3:c.A280G:p.M94V,Carnmt1:NM_001377052:exon3:c.A259G:p.M87V,Carnmt1:NM_001377053:exon3:c.A415G:p.M139V,Carnmt1:NM_001377054:exon3:c.A280G:p.M94V,Carnmt1:NM_001377055:exon3:c.A259G:p.M87V,Carnmt1:NM_026120:exon3:c.A415G:p.M139V"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.380412376	3	0.9999867	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	18690332	12A2p6	cell line	sgMsh2	18690332	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	107	2	0	0	exonic	Carnmt1	frameshift deletion	"Carnmt1:NM_001377051:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377052:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_001377053:exon4:c.666delT:p.F224Lfs*58,Carnmt1:NM_001377054:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377055:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_026120:exon4:c.666delT:p.F224Lfs*58"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.751977952	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	210	603	40	0.066334992	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.703320555	2	0.9945347	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	86	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	4	1	1	0.9986525	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr19	23210495	12A2p6	cell line	sgMsh2	23210495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	315	150	0	0	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252685:exon22:c.A2728G:p.T910A,Smc5:NM_153808:exon22:c.A2956G:p.T986A,Smc5:NM_001252684:exon23:c.A2998G:p.T1000A"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.402529374	3	0.9999763	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	25162947	12A2p6	cell line	sgMsh2	25162947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	48	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon31:c.A3850G:p.K1284E	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.981994738	1	0.9833679	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr19	25411712	12A2p6	cell line	sgMsh2	25411712	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	68	19	1	0.052631579	exonic	Kank1	synonymous SNV	"Kank1:NM_001348180:exon5:c.C2664T:p.T888T,Kank1:NM_181404:exon5:c.C2664T:p.T888T"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.353871977	3	0.8727202	CCG	synonymous	NA	NA	NA	NA
M4	chr19	25422280	12A2p6	cell line	sgMsh2	25422280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	114	19	3	0.157894737	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon6:c.G2853A:p.M951I,Kank1:NM_181404:exon6:c.G2853A:p.M951I"	19qB	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.9997453	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	26668822	12A2p6	cell line	sgMsh2	26668822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	159	1	0	0	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon11:c.C1849A:p.L617I	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.402529374	3	0.986849	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr19	26720882	12A2p6	cell line	sgMsh2	26720882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	113	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon27:c.A3949G:p.R1317G	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.77851835	1	0.6236682	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	237	321	47	0.146417445	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.703320555	2	0.997681	CTC	synonymous	NA	NA	NA	NA
M4	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	218	8	4	0.5	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9999995	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr19	29598038	12A2p6	cell line	sgMsh2	29598038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	235	39	3	0.076923077	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon21:c.A3046G:p.S1016G	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.530807966	2	0.9885777	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	29599989	12A2p6	cell line	sgMsh2	29599989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	207	45	7	0.155555556	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon22:c.A3292G:p.T1098A	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.570618564	2	0.9994042	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	160	289	28	0.096885813	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.884679944	1	0.9951751	TCG	synonymous	NA	NA	NA	NA
M4	chr19	29716475	12A2p6	cell line	sgMsh2	29716475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	262	57	5	0.087719298	exonic	9930021J03Rik	nonsynonymous SNV	9930021J03Rik:NM_172836:exon8:c.A5818G:p.N1940D	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.694473756	2	0.9994872	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	90	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.698897156	2	0.8178435	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	312	31	1	0.032258065	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.575041963	2	0.9999764	GTG	synonymous	NA	NA	NA	NA
M4	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	109	29	6	0.206896552	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.672356757	2	0.9536059	TAG	synonymous	NA	NA	NA	NA
M4	chr19	32057813	12A2p6	cell line	sgMsh2	32057813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	159	28	0	0	exonic	Asah2	frameshift deletion	Asah2:NM_018830:exon5:c.111delC:p.I38Lfs*58	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.650239759	NA	NA	TGG	frameshift	NA	NA	NA	-1
M4	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	359	24	0	0	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.575041963	2	0.9999935	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	303	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	4.31E-09	TAC	synonymous	NA	NA	NA	NA
M4	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	339	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.508690968	2	0.9267615	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	223	9	1	0.111111111	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.920067141	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M4	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	125	1	0	0	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.433493172	3	0.8044414	GTG	synonymous	NA	NA	NA	NA
M4	chr19	34952885	12A2p6	cell line	sgMsh2	34952885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	159	151	15	0.099337748	exonic	Kif20b	synonymous SNV	"Kif20b:NM_001362434:exon21:c.T3669C:p.R1223R,Kif20b:NM_183046:exon21:c.T3789C:p.R1263R"	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.517537767	2	0.9467929	GTG	synonymous	NA	NA	NA	NA
M4	chr19	34974516	12A2p6	cell line	sgMsh2	34974516	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	176	165	29	0.175757576	exonic	Kif20b	synonymous SNV	"Kif20b:NM_001362434:exon31:c.A5073G:p.K1691K,Kif20b:NM_183046:exon31:c.A5193G:p.K1731K"	19qC1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.619275961	2	0.9997845	AAC	synonymous	NA	NA	NA	NA
M4	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	140	144	61	0.423611111	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9999458	CAG	synonymous	NA	NA	NA	NA
M4	chr19	36983544	12A2p6	cell line	sgMsh2	36983544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	317	47	11	0.234042553	exonic	Btaf1	synonymous SNV	Btaf1:NM_001080706:exon19:c.T2316C:p.R772R	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.63254616	2	0.9999998	GTA	synonymous	NA	NA	NA	NA
M4	chr19	36988164	12A2p6	cell line	sgMsh2	36988164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	224	66	12	0.181818182	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon21:c.T3035C:p.L1012P	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	201	69	19	0.275362319	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9999986	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	218	82	10	0.12195122	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.47330377	3	0.6550098	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr19	38043240	12A2p6	cell line	sgMsh2	38043240	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.155	194	666	0	0	exonic	Myof	frameshift deletion	"Myof:NM_001099634:exon1:c.84delT:p.F28Lfs*26,Myof:NM_001302140:exon1:c.84delT:p.F28Lfs*26"	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.685626956	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr19	38097601	12A2p6	cell line	sgMsh2	38097601	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	43	78	9	0.115384615	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.C475A:p.L159M	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.818328948	1	9.64E-05	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	306	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	3.77E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	184	47	3	0.063829787	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.928913941	1	0.999778	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	120	58	9	0.155172414	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.389259175	3	0.9664737	CTG	synonymous	NA	NA	NA	NA
M4	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	176	1687	761	0.451096621	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9999936	GAC	synonymous	NA	NA	NA	NA
M4	chr19	42105421	12A2p6	cell line	sgMsh2	42105421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	162	154	11	0.071428571	exonic	Pi4k2a	nonsynonymous SNV	Pi4k2a:NM_145501:exon4:c.A860G:p.N287S	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.517537767	2	0.9474939	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	79	284	41	0.144366197	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.614852561	2	0.9565266	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	42323779	12A2p6	cell line	sgMsh2	42323779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	100	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon4:c.A476G:p.D159G,Crtac1:NM_001356589:exon4:c.A494G:p.D165G,Crtac1:NM_145123:exon4:c.A494G:p.D165G"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.557348365	2	0.9828194	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	80	61	10	0.163934426	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.561771764	2	0.970171	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	43691049	12A2p6	cell line	sgMsh2	43691049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	166	25	0	0	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon3:c.T40C:p.W14R	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.619275961	2	0.9996259	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.096	71	58	10	0.172413793	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.424646373	3	0.531481	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	43901935	12A2p6	cell line	sgMsh2	43901935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	234	46	7	0.152173913	exonic	Dnmbp	synonymous SNV	Dnmbp:NM_028029:exon4:c.A1392G:p.Q464Q	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.760824752	2	0.8609522	CTT	synonymous	NA	NA	NA	NA
M4	chr19	44973162	12A2p6	cell line	sgMsh2	44973162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	217	102	15	0.147058824	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon16:c.A3119G:p.Q1040R,Slf2:NM_172638:exon16:c.A1184G:p.Q395R"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.610429161	2	0.9999758	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	372	94	10	0.106382979	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.663509958	2	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	122	156	55	0.352564103	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	3	1	1	0.9998418	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	125	166	15	0.090361446	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.460033571	3	0.5271216	AAG	synonymous	NA	NA	NA	NA
M4	chr19	45024867	12A2p6	cell line	sgMsh2	45024867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	32	46	9	0.195652174	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon4:c.A1220G:p.Q407R,Lzts2:NM_001130526:exon4:c.A1220G:p.Q407R,Lzts2:NM_145503:exon4:c.A1220G:p.Q407R"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.694473756	1	0.5915825	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	68	30	4	0.133333333	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.495420768	2	0.8607565	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	46265201	12A2p6	cell line	sgMsh2	46265201	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	265	108	23	0.212962963	exonic	Gbf1	synonymous SNV	Gbf1:NM_178930:exon15:c.G1707A:p.Q569Q	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.588312163	2	0.9999786	AGC	synonymous	NA	NA	NA	NA
M4	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	54	14	6	0.428571429	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.9910144	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	46515460	12A2p6	cell line	sgMsh2	46515460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	131	391	43	0.109974425	exonic	Trim8	nonsynonymous SNV	Trim8:NM_053100:exon6:c.C1450T:p.H484Y	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.721014154	2	0.8778485	CCA	nonsynonymous	NA	NA	NA	NA
M4	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	153	259	29	0.111969112	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.729860954	2	0.8943905	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	278	33	3	0.090909091	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.583888763	2	0.9999773	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr19	47256825	12A2p6	cell line	sgMsh2	47256825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	73	2	0	0	exonic	Neurl1a	nonsynonymous SNV	"Neurl1a:NM_001163480:exon5:c.T1402C:p.C468R,Neurl1a:NM_021360:exon5:c.T1453C:p.C485R"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.698897156	2	0.7183479	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	126	125	10	0.08	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.77851835	1	6.43E-08	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	172	272	28	0.102941176	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.62812276	2	0.9996274	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	47637336	12A2p6	cell line	sgMsh2	47637336	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	201	416	4	0.009615385	exonic	Slk	frameshift deletion	"Slk:NM_001164639:exon15:c.3160delA:p.S1056Vfs*1,Slk:NM_009289:exon16:c.3253delA:p.S1087Vfs*1"	19qD1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.79178855	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	115	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.62369936	2	0.992732	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	140	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.446763372	3	0.7520019	GTG	synonymous	NA	NA	NA	NA
M4	chr19	53381278	12A2p6	cell line	sgMsh2	53381278	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.12	130	415	48	0.115662651	exonic	Smndc1	frameshift deletion	"Smndc1:NM_001356986:exon5:c.542delT:p.F181Sfs*13,Smndc1:NM_172429:exon5:c.542delT:p.F181Sfs*13"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.530807966	NA	NA	GAA	frameshift	TGT	8	TGTTGTTG	-1
M4	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	135	36	5	0.138888889	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.999927	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	55217338	12A2p6	cell line	sgMsh2	55217338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	164	3	0	0	exonic	Gucy2g	nonsynonymous SNV	"Gucy2g:NM_001371012:exon1:c.T166C:p.S56P,Gucy2g:NM_001081076:exon13:c.T2089C:p.S697P"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.645816359	2	0.9986851	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	173	1261	254	0.201427439	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.557348365	2	0.9965043	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr19	56800928	12A2p6	cell line	sgMsh2	56800928	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	329	109	11	0.100917431	exonic	Ccdc186	synonymous SNV	Ccdc186:NM_170757:exon9:c.G1554A:p.R518R	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.676780157	2	0.9999916	TCC	synonymous	NA	NA	NA	NA
M4	chr19	56908916	12A2p6	cell line	sgMsh2	56908916	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	117	0	0	NA	exonic	Vwa2	nonsynonymous SNV	Vwa2:NM_172840:exon12:c.G1652T:p.S551I	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.747554552	2	0.6560499	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr19	58270089	12A2p6	cell line	sgMsh2	58270089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	212	0	0	NA	exonic	Gfra1	nonsynonymous SNV	"Gfra1:NM_001285457:exon6:c.A830G:p.Y277C,Gfra1:NM_010279:exon7:c.A845G:p.Y282C"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	0.844869346	1	0.9816076	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	94	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.78736515	1	9.98E-07	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M4	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	165	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.455610171	3	0.7529863	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr19	58827590	12A2p6	cell line	sgMsh2	58827590	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	107	1	1	1	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon3:c.T220G:p.F74V,Hspa12a:NM_001327998:exon4:c.T274G:p.F92V"	19qD2	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.9996136	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	221	29	8	0.275862069	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	2	1	1	0.9999996	GAT	synonymous	NA	NA	NA	NA
M4	chr19	60767630	12A2p6	cell line	sgMsh2	60767630	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	126	663	81	0.122171946	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon18:c.A2692C:p.T898P	19qD3	chr19-6054831-61227351	7	5	2	0.99	4.379165722	NA	1	0.46888037	2	0.5774053	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	115	95	31	0.326315789	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	4935991	12A2p6	cell line	sgMsh2	4935991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	152	47	16	0.340425532	exonic	Phyh	nonsynonymous SNV	Phyh:NM_010726:exon7:c.A701G:p.H234R	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999735	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	4992103	12A2p6	cell line	sgMsh2	4992103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	73	38	2	0.052631579	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon19:c.A2566G:p.M856V,Mcm10:NM_027290:exon19:c.A2566G:p.M856V"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.698897156	2	0.7183479	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	10404486	12A2p6	cell line	sgMsh2	10404486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	130	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon5:c.G241A:p.V81M,Sfmbt2:NM_001198809:exon5:c.G241A:p.V81M,Sfmbt2:NM_001369078:exon5:c.G241A:p.V81M,Sfmbt2:NM_177386:exon6:c.G241A:p.V81M"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	0.7438078	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	111	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	10575343	12A2p6	cell line	sgMsh2	10575343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	82	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon18:c.G1816A:p.G606S,Sfmbt2:NM_001369078:exon18:c.G1816A:p.G606S,Sfmbt2:NM_177386:exon19:c.G1816A:p.G606S"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	GGG	nonsynonymous	G	5	GGGGG	NA
M4	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	159	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.78294175	1	0.5797069	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	13446067	12A2p6	cell line	sgMsh2	13446067	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	144	56	12	0.214285714	exonic	Cubn	synonymous SNV	Cubn:NM_001081084:exon19:c.T2526C:p.C842C	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	TAC	synonymous	NA	NA	NA	NA
M4	chr2	16142243	12A2p6	cell line	sgMsh2	16142243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	54	0	0	NA	exonic	Malrd1	synonymous SNV	Malrd1:NM_001310455:exon34:c.T5895C:p.C1965C	2qA2	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.989551	GTA	synonymous	NA	NA	NA	NA
M4	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	69	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9963014	AAG	synonymous	NA	NA	NA	NA
M4	chr2	16669851	12A2p6	cell line	sgMsh2	16669851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	140	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon9:c.T1008C:p.P336P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.831599147	1	0.9282175	CTT	synonymous	NA	NA	NA	NA
M4	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	105	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995648	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	23545181	12A2p6	cell line	sgMsh2	23545181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	50	18	0.36	exonic	Spopl	nonsynonymous SNV	Spopl:NM_029773:exon3:c.T172C:p.S58P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9989285	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr2	23545211	12A2p6	cell line	sgMsh2	23545211	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	102	38	11	0.289473684	exonic	Spopl	frameshift deletion	Spopl:NM_029773:exon3:c.142delA:p.M48Wfs*4	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	24802031	12A2p6	cell line	sgMsh2	24802031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	58	8	0.137931034	exonic	Ehmt1	nonsynonymous SNV	"Ehmt1:NM_001109686:exon23:c.T3286G:p.F1096V,Ehmt1:NM_001109687:exon23:c.T3301G:p.F1101V,Ehmt1:NM_001012518:exon24:c.T3445G:p.F1149V,Ehmt1:NM_172545:exon24:c.T3424G:p.F1142V"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9295972	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	79	106	16	0.150943396	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.681203557	2	0.8270769	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	100	103	32	0.310679612	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.707743955	2	0.8266299	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	25011619	12A2p6	cell line	sgMsh2	25011619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	114	14	3	0.214285714	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon16:c.G1656A:p.Q552Q	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.8692815	AGC	synonymous	NA	NA	NA	NA
M4	chr2	25082999	12A2p6	cell line	sgMsh2	25082999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	39	1	0	0	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.G316A:p.A106T	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9783332	GGC	nonsynonymous	GGA	8	GGAGGAGG	NA
M4	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	63	1	0	0	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	36	12	3	0.25	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	25442390	12A2p6	cell line	sgMsh2	25442390	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	120	11	0	0	exonic	Abca2	frameshift deletion	"Abca2:NM_001368624:exon27:c.4437delT:p.E1480Rfs*49,Abca2:NM_007379:exon27:c.4434delT:p.E1479Rfs*49"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	NA	NA	CTG	frameshift	NA	NA	NA	-1
M4	chr2	25442954	12A2p6	cell line	sgMsh2	25442954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	56	17	3	0.176470588	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon29:c.T4667C:p.L1556P,Abca2:NM_007379:exon29:c.T4664C:p.L1555P"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.9260368	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	77	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	0.7929879	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	80	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9958485	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	26912143	12A2p6	cell line	sgMsh2	26912143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	114	228	42	0.184210526	exonic	Rpl7a	synonymous SNV	Rpl7a:NM_013721:exon4:c.A399G:p.P133P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.765248151	1	5.10E-07	CAC	synonymous	NA	NA	NA	NA
M4	chr2	26926871	12A2p6	cell line	sgMsh2	26926871	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	80	250	47	0.188	exonic	Surf4	nonsynonymous SNV	Surf4:NM_011512:exon2:c.T133C:p.W45R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.756401352	1	0.5614737	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	26951726	12A2p6	cell line	sgMsh2	26951726	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	100	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379464:exon15:c.T1504G:p.L502V,Stkld1:NM_001379463:exon16:c.T1633G:p.L545V,Stkld1:NM_198628:exon16:c.T1609G:p.L537V"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	27171316	12A2p6	cell line	sgMsh2	27171316	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	76	0	0	NA	exonic	Dbh	nonsynonymous SNV	Dbh:NM_138942:exon4:c.A761C:p.E254A	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.486573969	2	0.8254957	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	27737442	12A2p6	cell line	sgMsh2	27737442	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	61	18	4	0.222222222	exonic	Rxra	nonsynonymous SNV	"Rxra:NM_001290481:exon2:c.A88G:p.T30A,Rxra:NM_001290482:exon2:c.A88G:p.T30A,Rxra:NM_011305:exon2:c.A172G:p.T58A"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9874552	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	71	74	16	0.216216216	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	187	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999967	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	44	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	29145392	12A2p6	cell line	sgMsh2	29145392	A	-	Deletion	Strelka2;Vardict	2	0.1739	92	63	7	0.111111111	exonic	Setx	frameshift deletion	Setx:NM_198033:exon10:c.1888delA:p.N632Tfs*16	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.769229211	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M4	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	50	29	6	0.206896552	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	9.17E-06	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M4	chr2	29926805	12A2p6	cell line	sgMsh2	29926805	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	77	42	10	0.238095238	exonic	Odf2	synonymous SNV	"Odf2:NM_001374179:exon19:c.C2136T:p.G712G,Odf2:NM_001113213:exon20:c.C2262T:p.G754G,Odf2:NM_001177659:exon20:c.C2265T:p.G755G,Odf2:NM_001369060:exon20:c.C2277T:p.G759G,Odf2:NM_001374180:exon20:c.C2262T:p.G754G,Odf2:NM_001374181:exon20:c.C2205T:p.G735G,Odf2:NM_001374182:exon20:c.C2205T:p.G735G,Odf2:NM_001355136:exon21:c.C2262T:p.G754G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	GCC	synonymous	NA	NA	NA	NA
M4	chr2	30032472	12A2p6	cell line	sgMsh2	30032472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	57	16	1	0.0625	exonic	Wdr34	nonsynonymous SNV	Wdr34:NM_001008498:exon7:c.G1147T:p.A383S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	17	4	0.235294118	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	58	60	32	0.533333333	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9929049	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr2	30333335	12A2p6	cell line	sgMsh2	30333335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	114	84	14	0.166666667	exonic	Nup188	nonsynonymous SNV	Nup188:NM_198304:exon30:c.A3221G:p.Y1074C	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.707743955	2	0.8796476	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	30956900	12A2p6	cell line	sgMsh2	30956900	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	59	68	16	0.235294118	exonic	Tor1b	nonsynonymous SNV	Tor1b:NM_133673:exon5:c.G858A:p.M286I	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	TGT	nonsynonymous	TG	8	TGTGTGTG	NA
M4	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	112	14	0.125	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.999944	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	31454882	12A2p6	cell line	sgMsh2	31454882	T	C	SNV	Mutect2;Vardict	2	0.089	48	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon92:c.T14005C:p.C4669R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.393682575	2	0.5028792	CTG	nonsynonymous	CTCCTG	13	CTCCTGCTCCTGC	NA
M4	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	189	808	254	0.314356436	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999971	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	159	85	15	0.176470588	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.417	13	8	2	0.25	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.09421058	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	91	1	0	0	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9981245	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	32647017	12A2p6	cell line	sgMsh2	32647017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	112	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon1:c.A60G:p.V20V,Eng:NM_001146350:exon1:c.A60G:p.V20V,Eng:NM_007932:exon1:c.A60G:p.V20V"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	9.30E-09	TAC	synonymous	NA	NA	NA	NA
M4	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	79	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.504267568	2	0.888026	CAC	synonymous	NA	NA	NA	NA
M4	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	72	34	7	0.205882353	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.641392959	2	0.8963855	CAT	synonymous	NA	NA	NA	NA
M4	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.206	71	188	32	0.170212766	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9775386	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	150	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999701	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	107	20	6	0.3	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9991911	GAG	synonymous	NA	NA	NA	NA
M4	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	40	53	11	0.20754717	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.659086558	2	0.006099054	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M4	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	62	248	78	0.314516129	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	35720607	12A2p6	cell line	sgMsh2	35720607	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	28	31	9	0.290322581	exonic	Dab2ip	nonsynonymous SNV	"Dab2ip:NM_001001602:exon10:c.T2638C:p.Y880H,Dab2ip:NM_001290639:exon10:c.T2461C:p.Y821H,Dab2ip:NM_001290640:exon10:c.T2602C:p.Y868H,Dab2ip:NM_001114124:exon12:c.T2833C:p.Y945H,Dab2ip:NM_001114125:exon12:c.T2749C:p.Y917H,Dab2ip:NM_001290637:exon12:c.T2662C:p.Y888H,Dab2ip:NM_001290641:exon12:c.T2461C:p.Y821H"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	36230677	12A2p6	cell line	sgMsh2	36230677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	33	4	0	0	exonic	Ptgs1	nonsynonymous SNV	Ptgs1:NM_008969:exon2:c.T17C:p.L6P	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9693129	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	36860016	12A2p6	cell line	sgMsh2	36860016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	279	0	0	NA	exonic	Olfr351	nonsynonymous SNV	Olfr351:NM_146942:exon1:c.T331G:p.F111V	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	1.48E-08	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	138	55	15	0.272727273	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999099	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	131	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	40697525	12A2p6	cell line	sgMsh2	40697525	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	115	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon77:c.A11717C:p.N3906T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	0.690226	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.241	141	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M4	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	91	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.601582362	2	0.982442	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M4	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	61	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9839591	GAG	synonymous	NA	NA	NA	NA
M4	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	128	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998893	GAT	synonymous	NA	NA	NA	NA
M4	chr2	42323680	12A2p6	cell line	sgMsh2	42323680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	111	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon2:c.A119G:p.H40R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.433493172	3	0.734286	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.377	53	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr2	43679951	12A2p6	cell line	sgMsh2	43679951	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	78	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon13:c.1244delT:p.F416Lfs*3,Kynu:NM_027552:exon13:c.1244delT:p.F416Lfs*3"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr2	43780782	12A2p6	cell line	sgMsh2	43780782	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	104	0	0	NA	exonic	Arhgap15	nonsynonymous SNV	"Arhgap15:NM_001301831:exon2:c.G177T:p.K59N,Arhgap15:NM_153820:exon2:c.G177T:p.K59N"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995381	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	48909281	12A2p6	cell line	sgMsh2	48909281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	185	204	38	0.18627451	exonic	Orc4	synonymous SNV	"Orc4:NM_001355296:exon13:c.A1098G:p.K366K,Orc4:NM_011958:exon13:c.A1098G:p.K366K"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9983957	GTT	synonymous	NA	NA	NA	NA
M4	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	92	286	59	0.206293706	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	AAA	synonymous	A	5	AAAAA	NA
M4	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	228	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9999211	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	53126864	12A2p6	cell line	sgMsh2	53126864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	114	150	22	0.146666667	exonic	Fmnl2	synonymous SNV	Fmnl2:NM_172409:exon25:c.T3054C:p.H1018H	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9973586	ATA	synonymous	NA	NA	NA	NA
M4	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	140	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999458	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	49	136	30	0.220588235	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9879366	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	61807334	12A2p6	cell line	sgMsh2	61807334	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	104	0	0	NA	exonic	Tbr1	nonsynonymous SNV	Tbr1:NM_009322:exon4:c.T1025C:p.V342A	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	163	3	0	0	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999862	ACT	synonymous	NA	NA	NA	NA
M4	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	101	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M4	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	158	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	GTT	synonymous	NA	NA	NA	NA
M4	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.152	129	15	1	0.066666667	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.672356757	2	0.9792034	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.161	128	15	0	0	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.712167355	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M4	chr2	66097856	12A2p6	cell line	sgMsh2	66097856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	43	152	29	0.190789474	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon4:c.T695C:p.L232P	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.716590754	1	0.5721283	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.169	251	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.747554552	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	215	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9968912	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	69439848	12A2p6	cell line	sgMsh2	69439848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	184	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon67:c.A12391G:p.N4131D	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.992625	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	216	4	2	0.5	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999994	TAT	synonymous	NA	NA	NA	NA
M4	chr2	72226075	12A2p6	cell line	sgMsh2	72226075	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	135	8	0	0	exonic	Rapgef4	frameshift deletion	"Rapgef4:NM_001355478:exon17:c.1520delA:p.E507Gfs*19,Rapgef4:NM_001204166:exon18:c.1574delA:p.E525Gfs*19,Rapgef4:NM_019688:exon20:c.1952delA:p.E651Gfs*19,Rapgef4:NM_001204165:exon21:c.2006delA:p.E669Gfs*19"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.920067141	NA	NA	GAG	frameshift	NA	NA	NA	-1
M4	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	24	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9486338	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	100	2	2	1	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	2	1	1	0.999414	AGC	synonymous	NA	NA	NA	NA
M4	chr2	76650615	12A2p6	cell line	sgMsh2	76650615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	85	0	0	NA	exonic	Pjvk	nonsynonymous SNV	Pjvk:NM_001080711:exon1:c.A194G:p.D65G	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.716590754	2	7.18E-05	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	76810347	12A2p6	cell line	sgMsh2	76810347	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	137	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.G16075A:p.V5359M,Ttn:NM_011652:exon184:c.G35818A:p.V11940M,Ttn:NM_001385708:exon221:c.G41650A:p.V13884M"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999046	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr2	76909571	12A2p6	cell line	sgMsh2	76909571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	106	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon45:c.T10623C:p.Y3541Y,Ttn:NM_001385708:exon47:c.T11136C:p.Y3712Y"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	CAT	synonymous	NA	NA	NA	NA
M4	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	143	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9770633	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	172	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999919	TAT	synonymous	NA	NA	NA	NA
M4	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	87	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.583888763	2	0.9809874	CTA	synonymous	NA	NA	NA	NA
M4	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	159	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.672356757	2	0.9939086	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	621	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.535231366	2	0.9999137	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M4	chr2	82993973	12A2p6	cell line	sgMsh2	82993974	AG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	247	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon17:c.20043_20044del:p.R6683Tfs*5	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.94660754	NA	NA	AAG	frameshift	A	5	AAAAA	-2
M4	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	243	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.836022547	1	0.9753712	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	83920743	12A2p6	cell line	sgMsh2	83920743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	216	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon6:c.A751G:p.T251A	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.650239759	2	0.9998668	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	84613891	12A2p6	cell line	sgMsh2	84613891	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	971	84	0.086508754	exonic	Ctnnd1	nonsynonymous SNV	"Ctnnd1:NM_001085449:exon7:c.T1416A:p.S472R,Ctnnd1:NM_001355067:exon7:c.T1416A:p.S472R,Ctnnd1:NM_001085448:exon8:c.T1719A:p.S573R,Ctnnd1:NM_001085450:exon8:c.T1719A:p.S573R,Ctnnd1:NM_001085453:exon8:c.T1719A:p.S573R,Ctnnd1:NM_001355064:exon8:c.T1719A:p.S573R,Ctnnd1:NM_001355066:exon8:c.T1719A:p.S573R,Ctnnd1:NM_001355065:exon9:c.T1719A:p.S573R,Ctnnd1:NM_007615:exon9:c.T1719A:p.S573R"	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.530807966	2	0.974413	TAC	nonsynonymous	CTTAC	10	CTTACCTTAC	NA
M4	chr2	84818277	12A2p6	cell line	sgMsh2	84818277	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	108	0	0	NA	exonic	Smtnl1	nonsynonymous SNV	Smtnl1:NM_024230:exon2:c.T632G:p.V211G	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.353871977	3	0.9868175	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M4	chr2	84956385	12A2p6	cell line	sgMsh2	84956385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	260	208	24	0.115384615	exonic	Slc43a3	nonsynonymous SNV	Slc43a3:NM_021398:exon12:c.A1409G:p.Y470C	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.738707753	2	0.9813438	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	154	319	37	0.115987461	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.486573969	2	8.15E-07	TTG	synonymous	NA	NA	NA	NA
M4	chr2	85041116	12A2p6	cell line	sgMsh2	85041116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	293	775	67	0.086451613	exonic	Ssrp1	nonsynonymous SNV	"Ssrp1:NM_001136081:exon8:c.T881C:p.V294A,Ssrp1:NM_182990:exon8:c.T881C:p.V294A"	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.420222973	3	0.9995555	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	85413972	12A2p6	cell line	sgMsh2	85413972	T	-	Deletion	Strelka2;Vardict	2	0.1509	232	0	0	NA	exonic	Olfr993	frameshift deletion	Olfr993:NM_146435:exon1:c.906delA:p.K302Nfs*1	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.667491018	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr2	85430435	12A2p6	cell line	sgMsh2	85430435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	448	0	0	NA	exonic	Olfr994	synonymous SNV	Olfr994:NM_146433:exon1:c.C393T:p.R131R	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.9999997	AGC	synonymous	NA	NA	NA	NA
M4	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	221	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.906796942	1	0.9997514	GTG	synonymous	NA	NA	NA	NA
M4	chr2	85647924	12A2p6	cell line	sgMsh2	85647924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	394	0	0	NA	exonic	Olfr1002	synonymous SNV	Olfr1002:NM_146573:exon1:c.T396C:p.Y132Y	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.01E-09	TAT	synonymous	NA	NA	NA	NA
M4	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	425	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.77851835	2	0.09889028	AGG	synonymous	NA	NA	NA	NA
M4	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	353	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.17E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	279	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.836022547	1	0.9820742	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	85887092	12A2p6	cell line	sgMsh2	85887092	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	717	0	0	NA	exonic	Olfr1023	synonymous SNV	Olfr1023:NM_146587:exon1:c.C291T:p.C97C	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.539654766	2	0.9999919	GCT	synonymous	NA	NA	NA	NA
M4	chr2	86084932	12A2p6	cell line	sgMsh2	86084932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	443	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A844G:p.I282V	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.358295377	3	1.06E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	354	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.548501565	2	0.9996972	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr2	86356129	12A2p6	cell line	sgMsh2	86356129	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	341	0	0	NA	exonic	Olfr1056	nonsynonymous SNV	Olfr1056:NM_147018:exon1:c.C252A:p.S84R	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.9999666	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	357	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.756401352	2	0.9828833	AAA	synonymous	NA	NA	NA	NA
M4	chr2	86422727	12A2p6	cell line	sgMsh2	86422727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	74	0	0	NA	exonic	Olfr1062	stoploss	Olfr1062:NM_147078:exon1:c.A948G:p.X316W	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.63254616	2	0.9204738	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	86594420	12A2p6	cell line	sgMsh2	86594420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	496	0	0	NA	exonic	Olfr1082	nonsynonymous SNV	Olfr1082:NM_207674:exon2:c.T407C:p.M136T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	86594497	12A2p6	cell line	sgMsh2	86594497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	369	0	0	NA	exonic	Olfr1082	synonymous SNV	Olfr1082:NM_207674:exon2:c.T330C:p.S110S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.9999974	CAC	synonymous	NA	NA	NA	NA
M4	chr2	86806874	12A2p6	cell line	sgMsh2	86806874	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	263	0	0	NA	exonic	Olfr141	stopgain	Olfr141:NM_181818:exon1:c.G124T:p.G42X	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	3	0.9546162	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	86806924	12A2p6	cell line	sgMsh2	86806924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	313	0	0	NA	exonic	Olfr141	nonsynonymous SNV	Olfr141:NM_181818:exon1:c.T74C:p.L25P	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.650239759	2	0.9999988	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	184	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.681203557	2	0.9964204	AAA	nonsynonymous	A	6	AAAAAA	NA
M4	chr2	87149865	12A2p6	cell line	sgMsh2	87149865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	118	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.C795T:p.S265S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.681203557	2	0.9558624	AGC	synonymous	NA	NA	NA	NA
M4	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	266	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.535231366	2	0.9946763	TAG	synonymous	NA	NA	NA	NA
M4	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	238	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.597158962	2	0.9999766	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr2	87213012	12A2p6	cell line	sgMsh2	87213012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	437	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.G119T:p.W40L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.380412376	3	4.72E-09	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	87457604	12A2p6	cell line	sgMsh2	87457604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	446	0	0	NA	exonic	Olfr1126	synonymous SNV	Olfr1126:NM_146837:exon1:c.G438A:p.K146K	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.544078165	2	0.9998603	AGT	synonymous	NA	NA	NA	NA
M4	chr2	87491040	12A2p6	cell line	sgMsh2	87491040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	358	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.A650G:p.N217S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.557348365	2	0.9999186	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	87607864	12A2p6	cell line	sgMsh2	87607864	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	487	0	0	NA	exonic	Olfr1130	nonsynonymous SNV	Olfr1130:NM_146838:exon2:c.A475G:p.I159V	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	1.04E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	261	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.9994691	AGG	synonymous	NA	NA	NA	NA
M4	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.188	406	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.831599147	NA	NA	CAT	frameshift	NA	NA	NA	1
M4	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	382	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.375988976	3	2.98E-08	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	406	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.707743955	2	0.9999815	TAC	synonymous	TACT	8	TACTTACT	NA
M4	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	355	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	209	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.583888763	2	0.9998077	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	87802956	12A2p6	cell line	sgMsh2	87802956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	308	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.T566C:p.L189S	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9999993	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	290	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.9999905	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	87833126	12A2p6	cell line	sgMsh2	87833126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	197	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T86C:p.L29P	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.9600292	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	507	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	87974216	12A2p6	cell line	sgMsh2	87974216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	374	0	0	NA	exonic	Olfr74	nonsynonymous SNV	Olfr74:NM_054091:exon1:c.T448C:p.Y150H	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.844869346	1	0.9972106	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	346	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.906796942	1	0.9999947	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	451	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr2	88025662	12A2p6	cell line	sgMsh2	88025662	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.103	72	0	0	NA	exonic	Olfr1161	frameshift deletion	Olfr1161:NM_146848:exon1:c.939delC:p.H315Ifs*15	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.455610171	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr2	88034957	12A2p6	cell line	sgMsh2	88034957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	280	0	0	NA	exonic	Olfr73	nonsynonymous SNV	Olfr73:NM_054090:exon1:c.T181C:p.Y61H	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47330377	3	0.8071174	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	88124972	12A2p6	cell line	sgMsh2	88124972	T	G	SNV	Mutect2;MuSe;Vardict	3	0.082	229	0	0	NA	exonic	Olfr1166	nonsynonymous SNV	Olfr1166:NM_146650:exon1:c.A12C:p.E4D	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.362718777	3	0.9999785	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	88185123	12A2p6	cell line	sgMsh2	88185123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	469	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.T245C:p.I82T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.552924965	2	0.9999807	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	549	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.906796942	1	1.11E-08	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	342	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	0.990841537	1	1.85E-09	CTG	synonymous	NA	NA	NA	NA
M4	chr2	88340488	12A2p6	cell line	sgMsh2	88340488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	108	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A922G:p.M308V	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	0.9904931	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	88391771	12A2p6	cell line	sgMsh2	88391771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	336	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.T523C:p.Y175H	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.433493172	3	0.999395	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	178	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.517537767	2	0.9510857	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M4	chr2	88461568	12A2p6	cell line	sgMsh2	88461568	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	239	0	0	NA	exonic	Olfr1183	nonsynonymous SNV	Olfr1183:NM_146529:exon1:c.C227A:p.P76H	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.703320555	2	0.9978239	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	120	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.9954099	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	88560355	12A2p6	cell line	sgMsh2	88560355	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	122	0	0	NA	exonic	Olfr1188	synonymous SNV	Olfr1188:NM_146919:exon1:c.G885A:p.R295R	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.46888037	2	8.00E-06	GGA	synonymous	NA	NA	NA	NA
M4	chr2	88683277	12A2p6	cell line	sgMsh2	88683277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	250	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.A454G:p.I152V	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.570618564	2	0.9998017	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	274	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.756401352	2	0.9406265	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	491	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.00E-09	CTA	synonymous	ACT	8	ACTACTAC	NA
M4	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	390	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.517537767	2	0.9812225	AGG	synonymous	NA	NA	NA	NA
M4	chr2	88767635	12A2p6	cell line	sgMsh2	88767635	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	478	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.T679G:p.S227A	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.977571338	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	88817843	12A2p6	cell line	sgMsh2	88817843	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	373	0	0	NA	exonic	Olfr1202	nonsynonymous SNV	Olfr1202:NM_146462:exon2:c.G671T:p.R224M	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.681203557	2	0.9999976	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	88831634	12A2p6	cell line	sgMsh2	88831634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	406	0	0	NA	exonic	Olfr1205	synonymous SNV	Olfr1205:NM_146896:exon2:c.T516C:p.I172I	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.01E-09	TTG	synonymous	TGAT	8	TGATTGAT	NA
M4	chr2	88958779	12A2p6	cell line	sgMsh2	88958779	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	344	0	0	NA	exonic	Olfr1212	frameshift deletion	Olfr1212:NM_207140:exon1:c.312delT:p.F105Sfs*6	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47772717	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	322	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.977571338	1	1.09E-08	TAA	synonymous	NA	NA	NA	NA
M4	chr2	89013973	12A2p6	cell line	sgMsh2	89013973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	272	0	0	NA	exonic	Olfr1216	synonymous SNV	Olfr1216:NM_146893:exon1:c.A90G:p.L30L	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	2.20E-08	ATA	synonymous	NA	NA	NA	NA
M4	chr2	89054702	12A2p6	cell line	sgMsh2	89054702	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	361	0	0	NA	exonic	Olfr1218	synonymous SNV	Olfr1218:NM_146818:exon1:c.C723A:p.A241A	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.924490541	1	0.9999995	GGG	synonymous	NA	NA	NA	NA
M4	chr2	89074615	12A2p6	cell line	sgMsh2	89074615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	504	0	0	NA	exonic	Olfr1219	nonsynonymous SNV	Olfr1219:NM_146899:exon1:c.A475G:p.I159V	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.442339972	3	0.9999704	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	89248975	12A2p6	cell line	sgMsh2	89248975	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	476	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.A718G:p.S240G	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.738707753	2	0.9997948	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	89282603	12A2p6	cell line	sgMsh2	89282603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	365	0	0	NA	exonic	Olfr1229	nonsynonymous SNV	Olfr1229:NM_001011761:exon1:c.A529G:p.I177V	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.47772717	3	0.8675379	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr2	89296788	12A2p6	cell line	sgMsh2	89296788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	218	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.A481G:p.M161V	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.552924965	2	0.9979547	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	147	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.539654766	2	0.9837146	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	292	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.78294175	2	0.6580103	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	89575060	12A2p6	cell line	sgMsh2	89575060	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	230	0	0	NA	exonic	Olfr1245	nonsynonymous SNV	Olfr1245:NM_146788:exon1:c.C665A:p.S222Y	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.9998512	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	227	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.862562945	1	0.995462	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	89930111	12A2p6	cell line	sgMsh2	89930111	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	339	0	0	NA	exonic	Olfr1258	frameshift deletion	Olfr1258:NM_146978:exon1:c.301delG:p.E102Sfs*13	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	0.999688336	NA	NA	TGG	frameshift	NA	NA	NA	-1
M4	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	217	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.490997369	2	0.7073878	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M4	chr2	90453440	12A2p6	cell line	sgMsh2	90453440	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	198	111	14	0.126126126	exonic	Ptprj	nonsynonymous SNV	"Ptprj:NM_001135657:exon12:c.G2389A:p.G797R,Ptprj:NM_008982:exon12:c.G2332A:p.G778R"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.495420768	2	0.7920452	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	346	65	13	0.2	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	1.26E-09	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	91190197	12A2p6	cell line	sgMsh2	91190197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	284	24	3	0.125	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon7:c.T970C:p.F324L,Nr1h3:NM_001355279:exon7:c.T970C:p.F324L,Nr1h3:NM_013839:exon7:c.T970C:p.F324L"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.672356757	2	0.9999654	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	276	96	10	0.104166667	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.747554552	2	0.9719676	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	209	48	2	0.041666667	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	2	1	1	0.9999991	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	91688761	12A2p6	cell line	sgMsh2	91688761	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	95	150	20	0.133333333	exonic	Atg13	nonsynonymous SNV	"Atg13:NM_001355416:exon6:c.T338A:p.V113D,Atg13:NM_001355417:exon6:c.T338A:p.V113D,Atg13:NM_001355418:exon6:c.T338A:p.V113D,Atg13:NM_001355419:exon6:c.T338A:p.V113D,Atg13:NM_001355420:exon6:c.T338A:p.V113D,Atg13:NM_001355421:exon6:c.T338A:p.V113D,Atg13:NM_145528:exon6:c.T338A:p.V113D"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.654663158	2	0.9504741	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	68	81	13	0.160493827	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82235500-94430128	6	4	2	0.99	4.379165722	NA	1	0.557348365	2	0.9492776	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	101688487	12A2p6	cell line	sgMsh2	101688487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	173	43	9	0.209302326	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon3:c.T320C:p.V107A,Traf6:NM_009424:exon4:c.T320C:p.V107A"	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999924	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	188	84	18	0.214285714	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.716590754	2	0.9766648	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	105393690	12A2p6	cell line	sgMsh2	105393690	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	113	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon3:c.A508C:p.K170Q	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	214	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999993	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr2	111316320	12A2p6	cell line	sgMsh2	111316320	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.156	328	0	0	NA	exonic	Olfr1280	synonymous SNV	Olfr1280:NM_146908:exon1:c.T840C:p.P280P	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.690050356	2	0.9999665	CTC	synonymous	NA	NA	NA	NA
M4	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.202	605	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	2.24E-08	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	493	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	1.01E-09	AGG	synonymous	NA	NA	NA	NA
M4	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	354	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	1.16E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M4	chr2	111449882	12A2p6	cell line	sgMsh2	111449882	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	383	0	0	NA	exonic	Olfr1287	synonymous SNV	Olfr1287:NM_001011773:exon1:c.T741G:p.V247V	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.9985089	TTT	synonymous	NA	NA	NA	NA
M4	chr2	111450013	12A2p6	cell line	sgMsh2	111450013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	318	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.A872G:p.N291S	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	2.35E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	192	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9977561	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	196	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999981	AAT	synonymous	NA	NA	NA	NA
M4	chr2	111489545	12A2p6	cell line	sgMsh2	111489545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	249	0	0	NA	exonic	Olfr1290	synonymous SNV	"Olfr1290:NM_001278787:exon2:c.A612G:p.G204G,Olfr1290:NM_001278788:exon2:c.A612G:p.G204G,Olfr1290:NM_146262:exon3:c.A612G:p.G204G"	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9956343	GTC	synonymous	NA	NA	NA	NA
M4	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	193	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8001307	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	261	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.78736515	2	0.5178107	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	111960825	12A2p6	cell line	sgMsh2	111960825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	258	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.T247C:p.Y83H	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9999863	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.585	110	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9996768	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	113	29	7	0.24137931	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9246323	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	162	149	33	0.22147651	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9954002	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	118279465	12A2p6	cell line	sgMsh2	118279465	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	64	0	0	NA	exonic	Gpr176	nonsynonymous SNV	Gpr176:NM_201367:exon3:c.G1312T:p.A438S	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	108	53	17	0.320754717	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.751977952	2	0.5828294	CAC	synonymous	NA	NA	NA	NA
M4	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	59	9	2	0.222222222	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	36	3	0	0	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9638931	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	111	32	3	0.09375	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	63	74	15	0.202702703	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	TAT	synonymous	NA	NA	NA	NA
M4	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	50	63	10	0.158730159	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	36	13	7	0.538461538	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.8961916	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	91	28	6	0.214285714	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8739857	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M4	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	116	157	0	0	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	207	168	37	0.220238095	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.999999	AAC	synonymous	NA	NA	NA	NA
M4	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	70	10	1	0.1	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	139	17	3	0.176470588	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9999417	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	82	43	14	0.325581395	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9982908	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	121236290	12A2p6	cell line	sgMsh2	121236290	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	122	58	0	0	exonic	Trp53bp1	frameshift deletion	"Trp53bp1:NM_001290830:exon12:c.1954delT:p.S652Rfs*4,Trp53bp1:NM_013735:exon12:c.1954delT:p.S652Rfs*4"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4	chr2	121321665	12A2p6	cell line	sgMsh2	121321665	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	76	17	2	0.117647059	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon28:c.G3360T:p.Q1120H	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9975588	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	28	8	0.285714286	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.877935	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.134	51	24	9	0.375	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.592735562	2	0.8517853	GTT	synonymous	NA	NA	NA	NA
M4	chr2	122807600	12A2p6	cell line	sgMsh2	122807600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	162	313	45	0.143769968	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon8:c.C1076T:p.T359I,Sqor:NM_021507:exon8:c.C1076T:p.T359I"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.751977952	2	0.7765712	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr2	125312913	12A2p6	cell line	sgMsh2	125312913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	159	0	0	NA	exonic	Fbn1	nonsynonymous SNV	Fbn1:NM_007993:exon59:c.T7262C:p.V2421A	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.667933358	2	0.9950877	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	125314635	12A2p6	cell line	sgMsh2	125314635	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	76	0	0	NA	exonic	Fbn1	nonsynonymous SNV	Fbn1:NM_007993:exon58:c.A7169C:p.K2390T	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	125363675	12A2p6	cell line	sgMsh2	125363675	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	81	0	0	NA	exonic	Fbn1	frameshift deletion	Fbn1:NM_007993:exon27:c.3280delG:p.D1094Tfs*14	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	94	9	3	0.333333333	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9989086	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	80	8	4	0.5	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9980751	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	126802597	12A2p6	cell line	sgMsh2	126802597	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	108	144	26	0.180555556	exonic	Trpm7	synonymous SNV	"Trpm7:NM_001164325:exon30:c.A4572G:p.S1524S,Trpm7:NM_021450:exon30:c.A4575G:p.S1525S"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.63254616	2	0.986198	TTG	synonymous	NA	NA	NA	NA
M4	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	133	23	9	0.391304348	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999178	ATA	synonymous	NA	NA	NA	NA
M4	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	174	94	5	0.053191489	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999928	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9931036	TTA	synonymous	NA	NA	NA	NA
M4	chr2	127363814	12A2p6	cell line	sgMsh2	127363814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	100	0	0	NA	exonic	Adra2b	nonsynonymous SNV	Adra2b:NM_009633:exon1:c.T235C:p.Y79H	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	176	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9649322	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	127536625	12A2p6	cell line	sgMsh2	127536625	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	22	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon11:c.C1348A:p.L450M,Prom2:NM_178047:exon11:c.C1348A:p.L450M"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9424838	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	127756164	12A2p6	cell line	sgMsh2	127756164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	111	32	11	0.34375	exonic	Nphp1	nonsynonymous SNV	"Nphp1:NM_001291012:exon15:c.T1396C:p.Y466H,Nphp1:NM_001291013:exon15:c.T1393C:p.Y465H,Nphp1:NM_001355429:exon15:c.T1396C:p.Y466H,Nphp1:NM_001369236:exon15:c.T1396C:p.Y466H,Nphp1:NM_016902:exon15:c.T1399C:p.Y467H"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	127801272	12A2p6	cell line	sgMsh2	127801272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	129	108	12	0.111111111	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon25:c.C3151T:p.L1051F,Bub1:NM_009772:exon25:c.C3148T:p.L1050F"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.751977952	2	0.6657073	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	133	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9987391	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	141	45	6	0.133333333	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	GTA	synonymous	NA	NA	NA	NA
M4	chr2	129472721	12A2p6	cell line	sgMsh2	129472721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	193	0	0	NA	exonic	F830045P16Rik	nonsynonymous SNV	"F830045P16Rik:NM_001379444:exon3:c.A635G:p.K212R,F830045P16Rik:NM_177653:exon3:c.A635G:p.K212R"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9999749	CTT	nonsynonymous	AGTC	8	AGTCAGTC	NA
M4	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.362	157	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr2	130275979	12A2p6	cell line	sgMsh2	130275979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	124	375	74	0.197333333	exonic	Nop56	nonsynonymous SNV	Nop56:NM_024193:exon5:c.T374C:p.V125A	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9964872	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	95	10	2	0.2	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	97	37	19	0.513513514	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992995	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	79	102	37	0.362745098	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9979572	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	64	98	13	0.132653061	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9742989	ATT	synonymous	NA	NA	NA	NA
M4	chr2	131936854	12A2p6	cell line	sgMsh2	131936854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	117	69	6	0.086956522	exonic	Prnp	nonsynonymous SNV	"Prnp:NM_011170:exon3:c.A425G:p.N142S,Prnp:NM_001278256:exon4:c.A425G:p.N142S"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.597158962	2	0.9959501	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	71	1	0	0	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9967152	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	125	47	3	0.063829787	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.756401352	2	0.6108722	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	113	20	0.17699115	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9966626	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	135364773	12A2p6	cell line	sgMsh2	135364773	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	33	2	0	0	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon26:c.G2716A:p.E906K,Plcb1:NM_019677:exon26:c.G2716A:p.E906K"	2qF3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.667933358	1	0.006847014	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr2	135958735	12A2p6	cell line	sgMsh2	135958735	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	98	0	0	NA	exonic	Plcb4	nonsynonymous SNV	"Plcb4:NM_001355154:exon18:c.G1508A:p.S503N,Plcb4:NM_001355156:exon18:c.G704A:p.S235N,Plcb4:NM_001355153:exon19:c.G1508A:p.S503N,Plcb4:NM_001355155:exon19:c.G1508A:p.S503N,Plcb4:NM_013829:exon19:c.G1508A:p.S503N"	2qF3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9980631	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr2	140661230	12A2p6	cell line	sgMsh2	140661230	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	137	98	19	0.193877551	exonic	Flrt3	synonymous SNV	"Flrt3:NM_001172160:exon3:c.T477G:p.L159L,Flrt3:NM_178382:exon3:c.T477G:p.L159L"	2qF3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999352	AAA	synonymous	A	5	AAAAA	NA
M4	chr2	144511505	12A2p6	cell line	sgMsh2	144511505	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	137	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon5:c.T461C:p.L154P,Dzank1:NM_001360362:exon5:c.T461C:p.L154P,Dzank1:NM_001360363:exon5:c.T461C:p.L154P,Dzank1:NM_172859:exon5:c.T461C:p.L154P"	2qG1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999352	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	148751018	12A2p6	cell line	sgMsh2	148751018	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	88	0	0	NA	exonic	Cstl1	frameshift deletion	Cstl1:NM_177655:exon2:c.92delG:p.G33Vfs*6	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.981994738	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4	chr2	150753244	12A2p6	cell line	sgMsh2	150753244	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	65	30	8	0.266666667	exonic	Entpd6	nonsynonymous SNV	"Entpd6:NM_001355068:exon2:c.G203A:p.R68H,Entpd6:NM_001370629:exon2:c.G203A:p.R68H,Entpd6:NM_001370630:exon2:c.G203A:p.R68H,Entpd6:NM_001370631:exon2:c.G203A:p.R68H,Entpd6:NM_172117:exon2:c.G203A:p.R68H"	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	CGT	nonsynonymous	NA	NA	NA	NA
M4	chr2	150763636	12A2p6	cell line	sgMsh2	150763636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	53	14	0.264150943	exonic	Entpd6	nonsynonymous SNV	"Entpd6:NM_001355068:exon8:c.A785G:p.Y262C,Entpd6:NM_001370629:exon8:c.A785G:p.Y262C,Entpd6:NM_001370630:exon8:c.A785G:p.Y262C,Entpd6:NM_172117:exon8:c.A785G:p.Y262C"	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	151472085	12A2p6	cell line	sgMsh2	151472085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	272	0	0	NA	exonic	4921509C19Rik	nonsynonymous SNV	4921509C19Rik:NM_198655:exon2:c.T1672C:p.S558P	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	2.20E-08	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	49	5	0	0	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9879366	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	152308424	12A2p6	cell line	sgMsh2	152308424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	223	59	21	0.355932203	exonic	Tbc1d20	nonsynonymous SNV	Tbc1d20:NM_024196:exon5:c.A616G:p.M206V	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.459	39	59	21	0.355932203	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9783332	AAG	synonymous	NA	NA	NA	NA
M4	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	135	256	47	0.18359375	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.79178855	1	9.74E-09	CTG	synonymous	NA	NA	NA	NA
M4	chr2	153203866	12A2p6	cell line	sgMsh2	153203866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	48	103	34	0.330097087	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon16:c.A1657G:p.S553G	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.987206	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	153920520	12A2p6	cell line	sgMsh2	153920520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	84	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon3:c.T146C:p.I49T,Bpifb3:NM_194357:exon3:c.T146C:p.I49T"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.429069773	3	0.5975554	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	108	10	1	0.1	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	GCT	synonymous	NA	NA	NA	NA
M4	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	76	624	121	0.193910256	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.690050356	2	0.7760217	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M4	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1204	108	239	1	0.0041841	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.532577326	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M4	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	85	150	33	0.22	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	ATA	synonymous	NA	NA	NA	NA
M4	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	21	48	6	0.125	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9391504	GTT	synonymous	NA	NA	NA	NA
M4	chr2	155506068	12A2p6	cell line	sgMsh2	155506068	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	55	0	0	NA	exonic	Ggt7	nonsynonymous SNV	"Ggt7:NM_001362898:exon3:c.T444G:p.S148R,Ggt7:NM_144786:exon3:c.T444G:p.S148R"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.681203557	2	0.6534215	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	155976185	12A2p6	cell line	sgMsh2	155976185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	29	8	0.275862069	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon17:c.T2453C:p.I818T,Cep250:NM_001130000:exon17:c.T2456C:p.I819T,Cep250:NM_008383:exon18:c.T2393C:p.I798T,Cep250:NM_177217:exon18:c.T2393C:p.I798T"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr2	156095699	12A2p6	cell line	sgMsh2	156095699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	52	34	5	0.147058824	exonic	Rbm12	synonymous SNV	"Rbm12:NM_029397:exon3:c.T2652C:p.S884S,Rbm12:NM_170598:exon3:c.T2652C:p.S884S"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	CAC	synonymous	NA	NA	NA	NA
M4	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.203	85	140	31	0.221428571	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9796931	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	19	15	6	0.4	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9319201	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	300	77	11	0.142857143	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9999992	TAT	synonymous	NA	NA	NA	NA
M4	chr2	157188016	12A2p6	cell line	sgMsh2	157188016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	60	71	23	0.323943662	exonic	Rbl1	synonymous SNV	"Rbl1:NM_001139516:exon11:c.A1386G:p.K462K,Rbl1:NM_011249:exon11:c.A1386G:p.K462K"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	GTT	synonymous	NA	NA	NA	NA
M4	chr2	157561705	12A2p6	cell line	sgMsh2	157561705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	21	2	1	0.5	exonic	Nnat	synonymous SNV	"Nnat:NM_001291128:exon3:c.A324G:p.P108P,Nnat:NM_001291129:exon3:c.A312G:p.P104P"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9391504	CAG	synonymous	NA	NA	NA	NA
M4	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	141	44	22	0.5	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M4	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	61	118	33	0.279661017	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9940585	GCG	synonymous	NA	NA	NA	NA
M4	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	112	68	11	0.161764706	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.592735562	2	0.994736	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	41	10	3	0.3	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9807187	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	197	1	0	0	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9999728	AGC	synonymous	NA	NA	NA	NA
M4	chr2	160992236	12A2p6	cell line	sgMsh2	160992236	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	144	35	2	0.057142857	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon18:c.A2705C:p.K902T	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.207899787	3	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	188	38	9	0.236842105	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9999968	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M4	chr2	165515333	12A2p6	cell line	sgMsh2	165515333	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	61	0	0	NA	exonic	Slc2a10	synonymous SNV	Slc2a10:NM_130451:exon2:c.C912T:p.C304C	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	GCG	synonymous	NA	NA	NA	NA
M4	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	70	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.672356757	2	0.000960015	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	166646993	12A2p6	cell line	sgMsh2	166646993	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	81	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon2:c.T257G:p.L86R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	166854918	12A2p6	cell line	sgMsh2	166854918	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	133	60	16	0.266666667	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon13:c.G1700A:p.R567K	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.999753	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	196	222	87	0.391891892	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999981	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	14	8	1	0.125	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9100394	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	60	12	0.2	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9725419	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr2	172367054	12A2p6	cell line	sgMsh2	172367054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	96	130	24	0.184615385	exonic	Aurka	nonsynonymous SNV	"Aurka:NM_001291185:exon3:c.C160T:p.R54C,Aurka:NM_011497:exon3:c.C226T:p.R76C"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9953337	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	125	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	117	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.927107	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	90	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	86	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9153531	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	43	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.734284353	1	0.000912975	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	93	24	7	0.291666667	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	2	1	1	0.9991113	CTA	synonymous	NA	NA	NA	NA
M4	chr2	178352481	12A2p6	cell line	sgMsh2	178352481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	100	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon35:c.T3649C:p.C1217R	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr2	180260288	12A2p6	cell line	sgMsh2	180260288	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	140	56	11	0.196428571	exonic	Cables2	nonsynonymous SNV	Cables2:NM_145851:exon9:c.A1277C:p.K426T	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.667933358	2	0.9889913	CTT	nonsynonymous	CTTCA	12	CTTCACTTCACT	NA
M4	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	69	19	0.275362319	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9656679	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	180660954	12A2p6	cell line	sgMsh2	180660954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	83	37	9	0.243243243	exonic	Dido1	nonsynonymous SNV	Dido1:NM_175551:exon16:c.A5156G:p.Q1719R	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9828137	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	156	48	0.307692308	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.976906	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9656679	GCT	synonymous	NA	NA	NA	NA
M4	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	103	72	21	0.291666667	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	ATC	nonsynonymous	A	5	AAAAA	NA
M4	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	175	12	2	0.166666667	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.379165722	NA	1	0.79178855	1	0.6639877	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	67	2	0	0	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M4	chr3	5400408	12A2p6	cell line	sgMsh2	5400408	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	126	3	1	0.333333333	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.G5703T:p.R1901S,Zfhx4:NM_030708:exon10:c.G5625T:p.R1875S"	3qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	122	11	3	0.272727273	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	131	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	168	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999898	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	95	38	8	0.210526316	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	AAG	synonymous	NA	NA	NA	NA
M4	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	69	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	19610572	12A2p6	cell line	sgMsh2	19610572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	148	0	0	NA	exonic	Dnajc5b	nonsynonymous SNV	"Dnajc5b:NM_001163536:exon5:c.C533T:p.P178L,Dnajc5b:NM_001163537:exon5:c.C533T:p.P178L,Dnajc5b:NM_025489:exon5:c.C533T:p.P178L"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	CCT	nonsynonymous	TACAAA	13	TACAAATACAAAT	NA
M4	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	110	19	4	0.210526316	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9841544	ACA	synonymous	NA	NA	NA	NA
M4	chr3	20063980	12A2p6	cell line	sgMsh2	20063980	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	111	78	14	0.179487179	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon3:c.G391A:p.E131K,Hltf:NM_009210:exon3:c.G391A:p.E131K"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	88	123	26	0.211382114	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9896479	AAT	nonsynonymous	A	5	AAAAA	NA
M4	chr3	27491158	12A2p6	cell line	sgMsh2	27491158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	50	8	0.16	exonic	Fndc3b	nonsynonymous SNV	"Fndc3b:NM_173182:exon10:c.A1076G:p.Y359C,Fndc3b:NM_001356953:exon11:c.A1076G:p.Y359C"	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	230	16	3	0.1875	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr3	30636316	12A2p6	cell line	sgMsh2	30636316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	101	0	0	NA	exonic	Lrrc34	nonsynonymous SNV	Lrrc34:NM_027941:exon6:c.G436A:p.G146R	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.997471	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	119	87	16	0.183908046	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.999177	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	54	3	2	0.666666667	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	36222184	12A2p6	cell line	sgMsh2	36222184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	56	0	0	NA	exonic	Qrfpr	nonsynonymous SNV	Qrfpr:NM_198192:exon1:c.A56G:p.N19S	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.992015	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	136	99	22	0.222222222	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999312	TTG	synonymous	NA	NA	NA	NA
M4	chr3	36964891	12A2p6	cell line	sgMsh2	36964891	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	109	38	5	0.131578947	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon38:c.C5939G:p.S1980C	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	210	41	12	0.292682927	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999992	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	38888297	12A2p6	cell line	sgMsh2	38888297	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.284	80	0	0	NA	exonic	Fat4	frameshift insertion	Fat4:NM_183221:exon1:c.1339dupC:p.T449Yfs*18	3qB	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CGC	frameshift	C	5	CCCCC	1
M4	chr3	53043308	12A2p6	cell line	sgMsh2	53043308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	108	2	0	0	exonic	Lhfp	nonsynonymous SNV	Lhfp:NM_175386:exon2:c.T2C:p.M1T	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr3	53655280	12A2p6	cell line	sgMsh2	53655280	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	98	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.A1805G:p.H602R	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	53656183	12A2p6	cell line	sgMsh2	53656183	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	71	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.G902T:p.R301M	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9316411	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	91	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.991747	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	133	68	13	0.191176471	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	112	143	29	0.202797203	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9988554	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	54782403	12A2p6	cell line	sgMsh2	54782403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	20	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon2:c.A43G:p.S15G	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9356325	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	130	66	17	0.257575758	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	73	66	15	0.227272727	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	47	7	2	0.285714286	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9864319	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M4	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	172	12	0	0	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.760824752	2	0.7202674	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	142	14	1	0.071428571	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999519	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	60	283	5	0.017667845	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.831599147	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	167	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999891	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	27	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9317374	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	66061059	12A2p6	cell line	sgMsh2	66061059	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	185	0	0	NA	exonic	Veph1	frameshift deletion	Veph1:NM_145820:exon13:c.2262delA:p.K754Nfs*10	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4	chr3	67440182	12A2p6	cell line	sgMsh2	67440182	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	79	82	18	0.219512195	exonic	Gfm1	nonsynonymous SNV	Gfm1:NM_138591:exon6:c.T773G:p.V258G	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	68898525	12A2p6	cell line	sgMsh2	68898525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	232	42	7	0.166666667	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon19:c.A2183G:p.K728R	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	223	38	10	0.263157895	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
M4	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	70	22	5	0.227272727	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.9965144	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	70	323	0	0	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M4	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	196	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999981	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	75257898	12A2p6	cell line	sgMsh2	75257898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	128	0	0	NA	exonic	Serpini2	nonsynonymous SNV	Serpini2:NM_026460:exon5:c.T695C:p.M232T	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9998411	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	162	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999854	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	86	5	0	0	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr3	82097612	12A2p6	cell line	sgMsh2	82097612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	146	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon8:c.C1865T:p.T622I,Gucy1a1:NM_001356988:exon8:c.C1865T:p.T622I,Gucy1a1:NM_021896:exon8:c.C1865T:p.T622I"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999621	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	162	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999854	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	126	40	7	0.175	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	AAT	synonymous	NA	NA	NA	NA
M4	chr3	84595028	12A2p6	cell line	sgMsh2	84595028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	141	2	1	0.5	exonic	Tigd4	nonsynonymous SNV	Tigd4:NM_207278:exon1:c.A1251G:p.I417M	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	174	34	11	0.323529412	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.813905548	1	0.8666104	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M4	chr3	85605048	12A2p6	cell line	sgMsh2	85605048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	104	28	14	0.5	exonic	Gatb	nonsynonymous SNV	Gatb:NM_144896:exon5:c.A674C:p.D225A	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9966169	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	158	36	10	0.277777778	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr3	87686006	12A2p6	cell line	sgMsh2	87686006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	61	39	4	0.102564103	exonic	Arhgef11	synonymous SNV	"Arhgef11:NM_001003912:exon4:c.A231G:p.A77A,Arhgef11:NM_001360195:exon4:c.A231G:p.A77A"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.747554552	1	0.5927541	CAG	synonymous	NA	NA	NA	NA
M4	chr3	87926813	12A2p6	cell line	sgMsh2	87926813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	49	24	7	0.291666667	exonic	Rrnad1	nonsynonymous SNV	Rrnad1:NM_153562:exon5:c.A554G:p.N185S	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.8938094	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr3	88116071	12A2p6	cell line	sgMsh2	88116071	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	59	7	0	0	exonic	Iqgap3	synonymous SNV	Iqgap3:NM_001033484:exon34:c.C4362T:p.V1454V	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	TCA	synonymous	NA	NA	NA	NA
M4	chr3	88168319	12A2p6	cell line	sgMsh2	88168319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	56	42	16	0.380952381	exonic	Mef2d	nonsynonymous SNV	"Mef2d:NM_001310593:exon10:c.T1484C:p.V495A,Mef2d:NM_133665:exon10:c.T1487C:p.V496A,Mef2d:NM_001310587:exon11:c.T1508C:p.V503A"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9752068	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	88394548	12A2p6	cell line	sgMsh2	88394548	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	45	82	21	0.256097561	exonic	Pmf1	nonsynonymous SNV	"Pmf1:NM_001310605:exon3:c.A371C:p.E124A,Pmf1:NM_025928:exon5:c.A578C:p.E193A"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	74	12	4	0.333333333	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9508366	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	88966257	12A2p6	cell line	sgMsh2	88966257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	200	68	13	0.191176471	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon1:c.A346G:p.K116E	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9998784	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	50	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9567852	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M4	chr3	89187535	12A2p6	cell line	sgMsh2	89187535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	20	50	10	0.2	exonic	Fam189b	nonsynonymous SNV	"Fam189b:NM_001355765:exon8:c.A472G:p.T158A,Fam189b:NM_001014995:exon9:c.A1444G:p.T482A,Fam189b:NM_001355760:exon9:c.A1126G:p.T376A"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9356325	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	89243681	12A2p6	cell line	sgMsh2	89243681	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	14	7	0.5	exonic	Trim46	nonsynonymous SNV	"Trim46:NM_001039466:exon3:c.C533A:p.A178D,Trim46:NM_183037:exon3:c.C572A:p.A191D"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	70	80	14	0.175	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.9965144	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	89423528	12A2p6	cell line	sgMsh2	89423528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	82	278	71	0.255395683	exonic	Shc1	nonsynonymous SNV	"Shc1:NM_001113331:exon3:c.G587A:p.C196Y,Shc1:NM_011368:exon4:c.G257A:p.C86Y"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9926775	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr3	89432802	12A2p6	cell line	sgMsh2	89432802	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	28	107	16	0.14953271	exonic	Pygo2	nonsynonymous SNV	"Pygo2:NM_001293763:exon3:c.A395C:p.Q132P,Pygo2:NM_001293766:exon3:c.A395C:p.Q132P,Pygo2:NM_001293767:exon3:c.A395C:p.Q132P,Pygo2:NM_001293768:exon3:c.A506C:p.Q169P,Pygo2:NM_026869:exon3:c.A395C:p.Q132P"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	91	45	12	0.266666667	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	0.7886186	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	48	756	210	0.277777778	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	173	80	27	0.3375	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9546912	AGC	synonymous	NA	NA	NA	NA
M4	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	148	1	0	0	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	TCA	nonsynonymous	NA	NA	NA	NA
M4	chr3	90257131	12A2p6	cell line	sgMsh2	90257131	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	220	43	9	0.209302326	exonic	Crtc2	nonsynonymous SNV	Crtc2:NM_028881:exon2:c.A168C:p.K56N	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.9464429	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr3	90352014	12A2p6	cell line	sgMsh2	90352014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	108	34	9	0.264705882	exonic	Gatad2b	nonsynonymous SNV	"Gatad2b:NM_001379656:exon7:c.A1104G:p.I368M,Gatad2b:NM_001379657:exon7:c.A1101G:p.I367M,Gatad2b:NM_139304:exon7:c.A1104G:p.I368M,Gatad2b:NM_001379655:exon8:c.A1104G:p.I368M"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	247	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M4	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	264	134	32	0.23880597	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	3.47E-08	GTG	synonymous	NA	NA	NA	NA
M4	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	74	32	9	0.28125	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	CTT	nonsynonymous	T	5	TTTTT	NA
M4	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	75	122	22	0.180327869	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	125	252	49	0.194444444	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr3	95506613	12A2p6	cell line	sgMsh2	95506613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	1	0	0	exonic	Ctsk	nonsynonymous SNV	Ctsk:NM_007802:exon6:c.T670C:p.Y224H	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	189	166	27	0.162650602	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8004661	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	195	180	29	0.161111111	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.9827647	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	121	1	0	0	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	103	73	15	0.205479452	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Strelka2;Vardict	2	0.2941	17	0	0	NA	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr3	96630957	12A2p6	cell line	sgMsh2	96630957	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	279	510	13	0.025490196	exonic	Rbm8a	frameshift deletion	"Rbm8a:NM_001102407:exon4:c.297delA:p.N101Ifs*12,Rbm8a:NM_025875:exon4:c.294delA:p.N100Ifs*12"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	114	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	AAG	synonymous	NA	NA	NA	NA
M4	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	6	2	0.333333333	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	132	14	4	0.285714286	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999127	AGT	synonymous	NA	NA	NA	NA
M4	chr3	98852774	12A2p6	cell line	sgMsh2	98852774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	282	0	0	NA	exonic	Hsd3b1	synonymous SNV	"Hsd3b1:NM_001304800:exon4:c.T900C:p.T300T,Hsd3b1:NM_008293:exon5:c.T900C:p.T300T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9998235	CAG	synonymous	NA	NA	NA	NA
M4	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	88	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	CTT	synonymous	NA	NA	NA	NA
M4	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	79	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.976054	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	101056623	12A2p6	cell line	sgMsh2	101056623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	177	43	0.242937853	exonic	Ptgfrn	nonsynonymous SNV	Ptgfrn:NM_011197:exon6:c.A1672G:p.K558E	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	101586865	12A2p6	cell line	sgMsh2	101586865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	51	489	141	0.288343558	exonic	Atp1a1	nonsynonymous SNV	Atp1a1:NM_144900:exon11:c.A1418G:p.K473R	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	82	8	4	0.5	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	269	162	38	0.234567901	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	2.60E-08	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.104	50	19	3	0.157894737	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.460033571	2	0.762845	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	103821642	12A2p6	cell line	sgMsh2	103821642	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	102	36	9	0.25	exonic	Ap4b1	nonsynonymous SNV	"Ap4b1:NM_001163553:exon9:c.C2015A:p.P672H,Ap4b1:NM_026193:exon10:c.C2099A:p.P700H,Ap4b1:NM_001163552:exon11:c.C2099A:p.P700H"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.994447	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	104004409	12A2p6	cell line	sgMsh2	104004409	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	29	39	4	0.102564103	exonic	Phtf1	frameshift deletion	"Phtf1:NM_001163468:exon16:c.1907delA:p.K638Sfs*9,Phtf1:NM_001163469:exon16:c.1931delA:p.K646Sfs*9,Phtf1:NM_001163467:exon17:c.2066delA:p.K691Sfs*9,Phtf1:NM_013629:exon17:c.2066delA:p.K691Sfs*9"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	85	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.996366	GGA	synonymous	NA	NA	NA	NA
M4	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	88	65	22	0.338461538	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	204	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9992682	CTG	nonsynonymous	C	5	CCCCC	NA
M4	chr3	106161214	12A2p6	cell line	sgMsh2	106161214	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	280	0	0	NA	exonic	Chil3	frameshift deletion	Chil3:NM_009892:exon4:c.274delA:p.T92Lfs*67	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.663509958	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	130	9	3	0.333333333	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.983333	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	99	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993781	GCT	synonymous	NA	NA	NA	NA
M4	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.1557	122	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.688723336	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M4	chr3	107332304	12A2p6	cell line	sgMsh2	107332304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	38	30	4	0.133333333	exonic	Rbm15	synonymous SNV	Rbm15:NM_001045807:exon1:c.G777A:p.P259P	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	ACG	synonymous	NA	NA	NA	NA
M4	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9795546	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	171	18	2	0.111111111	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999914	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	22	2	0	0	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.9424838	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	77	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9976995	CTG	synonymous	NA	NA	NA	NA
M4	chr3	108413893	12A2p6	cell line	sgMsh2	108413893	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	119	0	0	NA	exonic	Celsr2	frameshift deletion	"Celsr2:NM_001004177:exon1:c.1602delT:p.G535Vfs*45,Celsr2:NM_017392:exon1:c.1602delT:p.G535Vfs*45"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.893526743	NA	NA	CAG	frameshift	NA	NA	NA	-1
M4	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	78	17	4	0.235294118	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9544298	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	69	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	114164371	12A2p6	cell line	sgMsh2	114164371	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	28	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon43:c.C3293A:p.P1098H	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	122	306	69	0.225490196	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	CCT	synonymous	NA	NA	NA	NA
M4	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	54	53	11	0.20754717	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	145	3	1	0.333333333	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.747554552	2	9.19E-08	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr3	116579670	12A2p6	cell line	sgMsh2	116579670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	108	3	0	0	exonic	Lrrc39	nonsynonymous SNV	Lrrc39:NM_001379629:exon8:c.A978G:p.I326M	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	TAT	nonsynonymous	T	5	TTTTT	NA
M4	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	136	23	6	0.260869565	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999312	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	127	74	21	0.283783784	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998825	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	122141756	12A2p6	cell line	sgMsh2	122141756	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	145	0	0	NA	exonic	Abca4	frameshift deletion	Abca4:NM_007378:exon31:c.4602delA:p.T1536Rfs*5	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	133	2	0	0	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9547738	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr3	123552522	12A2p6	cell line	sgMsh2	123552522	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	155	1	0	0	exonic	Ndst3	nonsynonymous SNV	"Ndst3:NM_001293682:exon8:c.C857T:p.A286V,Ndst3:NM_031186:exon9:c.C2102T:p.A701V"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999778	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9833933	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	124321788	12A2p6	cell line	sgMsh2	124321788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	88	1	0	0	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.T596C:p.I199T	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9982719	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	165	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999878	CGA	synonymous	NA	NA	NA	NA
M4	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Strelka2;Vardict	2	0.1728	81	77	3	0.038961039	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.764363471	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M4	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	114	11	5	0.454545455	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9963995	CAC	synonymous	NA	NA	NA	NA
M4	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	144	29	3	0.103448276	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	81	6	1	0.166666667	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.9981861	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	173	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999924	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	101	123	26	0.211382114	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	123	279	64	0.229390681	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	ATG	synonymous	NA	NA	NA	NA
M4	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	101	18	3	0.166666667	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	TAC	synonymous	NA	NA	NA	NA
M4	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	129	164	1	0.006097561	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9987638	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	111	107	23	0.214953271	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	137885322	12A2p6	cell line	sgMsh2	137885322	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	73	40	13	0.325	exonic	Dnajb14	synonymous SNV	Dnajb14:NM_001033155:exon2:c.G183A:p.T61T	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9960448	CGC	synonymous	NA	NA	NA	NA
M4	chr3	138147385	12A2p6	cell line	sgMsh2	138147385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	49	26	7	0.269230769	exonic	Trmt10a	synonymous SNV	"Trmt10a:NM_001348196:exon2:c.T6C:p.N2N,Trmt10a:NM_175389:exon2:c.T6C:p.N2N,Trmt10a:NM_001348197:exon3:c.T6C:p.N2N"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.645816359	2	0.715275	ATA	synonymous	NA	NA	NA	NA
M4	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	246	458	112	0.244541485	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.999989	AAA	nonsynonymous	A	5	AAAAA	NA
M4	chr3	141211479	12A2p6	cell line	sgMsh2	141211479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	64	0	0	NA	exonic	Pdha2	synonymous SNV	Pdha2:NM_008811:exon1:c.T267C:p.R89R	3qH1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	CAC	synonymous	NA	NA	NA	NA
M4	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	122	2	0	0	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	CTC	synonymous	NA	NA	NA	NA
M4	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	234	88	22	0.25	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9998334	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	264	1	0	0	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	3.47E-08	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	102	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9984043	GTT	synonymous	NA	NA	NA	NA
M4	chr3	145988293	12A2p6	cell line	sgMsh2	145988293	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.375	6	0	0	NA	exonic	Syde2	nonsynonymous SNV	Syde2:NM_001166064:exon1:c.T295C:p.Y99H	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	2	1	1	0.8593041	CTA	nonsynonymous	ACT	8	ACTACTAC	NA
M4	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9694322	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	148833898	12A2p6	cell line	sgMsh2	148833898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	103	52	21	0.403846154	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon16:c.A2985G:p.I995M	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr3	152276697	12A2p6	cell line	sgMsh2	152276697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	44	16	3	0.1875	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon14:c.A1549G:p.T517A,Miga1:NM_174868:exon16:c.A1741G:p.T581A"	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.645816359	2	0.006898637	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	52	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	CCA	synonymous	C	5	CCCCC	NA
M4	chr3	154264010	12A2p6	cell line	sgMsh2	154264010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	197	0	0	NA	exonic	Slc44a5	nonsynonymous SNV	Slc44a5:NM_001081263:exon19:c.A1803C:p.E601D	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999982	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	362	145	28	0.193103448	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	1.10E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	131	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9998085	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	65	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9808189	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	155086895	12A2p6	cell line	sgMsh2	155086895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	168	47	15	0.319148936	exonic	Fpgt	synonymous SNV	Fpgt:NM_029330:exon4:c.A1494G:p.K498K	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999898	CTT	synonymous	NA	NA	NA	NA
M4	chr3	155087127	12A2p6	cell line	sgMsh2	155087127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	123	47	13	0.276595745	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.C1262T:p.S421F	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	155	40	1	0.025	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9987554	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	126	33	8	0.242424242	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr3	155101249	12A2p6	cell line	sgMsh2	155101249	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	152	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon3:c.534delC:p.S180Vfs*9	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.999688336	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	106	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.9467112	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	155	166	52	0.313253012	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999778	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr3	158170584	12A2p6	cell line	sgMsh2	158170584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	79	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon18:c.C1967T:p.P656L,Lrrc7:NM_001370782:exon18:c.C1967T:p.P656L,Lrrc7:NM_001081358:exon19:c.C1868T:p.P623L,Lrrc7:NM_001291452:exon19:c.C1868T:p.P623L,Lrrc7:NM_001291453:exon19:c.C1868T:p.P623L"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr3	159522741	12A2p6	cell line	sgMsh2	159522741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	165	32	6	0.1875	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon8:c.T1129C:p.C377R,Depdc1a:NM_029523:exon8:c.T1129C:p.C377R"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999878	ATG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M4	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	181	89	23	0.258426966	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999953	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	5798842	12A2p6	cell line	sgMsh2	5798842	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.162	41	0	0	NA	exonic	Fam110b	nonsynonymous SNV	"Fam110b:NM_001355716:exon3:c.C259A:p.P87T,Fam110b:NM_173426:exon3:c.C259A:p.P87T"	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.716590754	1	0.5855261	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	8238026	12A2p6	cell line	sgMsh2	8238026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	90	0	0	NA	exonic	Car8	nonsynonymous SNV	Car8:NM_007592:exon2:c.A188G:p.D63G	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	65	112	22	0.196428571	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	11248260	12A2p6	cell line	sgMsh2	11248260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	47	101	23	0.227722772	exonic	Ints8	synonymous SNV	"Ints8:NM_001159595:exon3:c.T357C:p.S119S,Ints8:NM_178112:exon3:c.T357C:p.S119S"	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8480747	TAC	synonymous	NA	NA	NA	NA
M4	chr4	11317100	12A2p6	cell line	sgMsh2	11317100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	211	46	10	0.217391304	exonic	Dpy19l4	nonsynonymous SNV	Dpy19l4:NM_001081201:exon2:c.A97G:p.T33A	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999986	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	192	126	37	0.293650794	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	14524506	12A2p6	cell line	sgMsh2	14524506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	121	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon12:c.T1377G:p.F459L	4qA1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	CAA	nonsynonymous	AAC	8	AACAACAA	NA
M4	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	171	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999914	AAG	synonymous	NA	NA	NA	NA
M4	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	106	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995899	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	19122406	12A2p6	cell line	sgMsh2	19122406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	88	0	0	NA	exonic	Cnbd1	synonymous SNV	Cnbd1:NM_001371269:exon1:c.T81C:p.S27S	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	AAC	synonymous	NA	NA	NA	NA
M4	chr4	19364135	12A2p6	cell line	sgMsh2	19364135	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	111	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon4:c.C338T:p.T113I	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.756401352	2	0.5581778	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr4	19367774	12A2p6	cell line	sgMsh2	19367774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	119	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon6:c.C682A:p.L228I	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.999775	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	66	40	7	0.175	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	100	205	62	0.302439024	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	142	26	13	0.5	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999519	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	21879772	12A2p6	cell line	sgMsh2	21879772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	40	27	5	0.185185185	exonic	Coq3	nonsynonymous SNV	Coq3:NM_172687:exon1:c.C85T:p.P29S	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.97956	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	119	11	1	0.090909091	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	96	77	22	0.285714286	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	ATG	synonymous	NA	NA	NA	NA
M4	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	117	17	7	0.411764706	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997869	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr4	33081343	12A2p6	cell line	sgMsh2	33081343	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	70	0	0	NA	exonic	Gabrr2	synonymous SNV	Gabrr2:NM_008076:exon4:c.C378T:p.T126T	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	CCC	synonymous	NA	NA	NA	NA
M4	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	138	62	14	0.225806452	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr4	35083872	12A2p6	cell line	sgMsh2	35083872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	108	22	5	0.227272727	exonic	Mob3b	nonsynonymous SNV	Mob3b:NM_178061:exon2:c.T316C:p.Y106H	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	40220401	12A2p6	cell line	sgMsh2	40220401	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	135	28	7	0.25	exonic	Ddx58	nonsynonymous SNV	Ddx58:NM_172689:exon10:c.T1481G:p.L494R	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.83223	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	180	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.552924965	2	0.9958603	TAC	synonymous	NA	NA	NA	NA
M4	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	44	0	0	NA	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	41093949	12A2p6	cell line	sgMsh2	41093949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	51	2	1	0.5	exonic	Aqp3	synonymous SNV	Aqp3:NM_016689:exon5:c.T543C:p.P181P	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	AAG	synonymous	NA	NA	NA	NA
M4	chr4	41394976	12A2p6	cell line	sgMsh2	41394976	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	65	11	3	0.272727273	exonic	Kif24	synonymous SNV	Kif24:NM_024241:exon11:c.G2298A:p.P766P	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9808189	GCG	synonymous	NA	NA	NA	NA
M4	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	87	136	15	0.110294118	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4	chr4	42972753	12A2p6	cell line	sgMsh2	42972753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	107	0	0	NA	exonic	1700022I11Rik	synonymous SNV	1700022I11Rik:NM_026088:exon2:c.A2085G:p.P695P	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9953637	CAG	synonymous	NA	NA	NA	NA
M4	chr4	43009258	12A2p6	cell line	sgMsh2	43009258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	31	18	5	0.277777778	exonic	Fancg	nonsynonymous SNV	"Fancg:NM_001163233:exon3:c.C212T:p.A71V,Fancg:NM_053081:exon3:c.C212T:p.A71V"	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.694473756	1	0.5997131	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr4	43578228	12A2p6	cell line	sgMsh2	43578228	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	40	11	3	0.272727273	exonic	Gba2	nonsynonymous SNV	Gba2:NM_172692:exon1:c.G120T:p.E40D	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.97956	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	80	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9980751	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	126	5	3	0.6	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.99901	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr4	45279623	12A2p6	cell line	sgMsh2	45279623	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	27	14	3	0.214285714	exonic	Frmpd1	frameshift deletion	Frmpd1:NM_001081172:exon15:c.2347delC:p.P783Hfs*15	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	246	51	1	0.019607843	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4	chr4	45882738	12A2p6	cell line	sgMsh2	45882738	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	95	0	0	NA	exonic	Stra6l	nonsynonymous SNV	"Stra6l:NM_028788:exon16:c.A1448C:p.N483T,Stra6l:NM_001305421:exon17:c.A1175C:p.N392T"	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.999211	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	46798579	12A2p6	cell line	sgMsh2	46798579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	28	0	0	NA	exonic	Gabbr2	synonymous SNV	Gabbr2:NM_001081141:exon6:c.C894T:p.S298S	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	AGG	synonymous	NA	NA	NA	NA
M4	chr4	48279388	12A2p6	cell line	sgMsh2	48279388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	31	116	19	0.163793103	exonic	Erp44	nonsynonymous SNV	Erp44:NM_029572:exon1:c.T53C:p.L18P	4qB1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	9.76E-06	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	57	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.8444074	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	55011581	12A2p6	cell line	sgMsh2	55011581	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.171	68	25	0	0	exonic	Zfp462	frameshift insertion	Zfp462:NM_172867:exon3:c.3547dupT:p.C1185Lfs*4	4qB2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.756401352	NA	NA	TGT	frameshift	T	5	TTTTT	1
M4	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	135	17	4	0.235294118	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.999927	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	57	34	5	0.147058824	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.725437554	1	0.5148567	CTC	synonymous	NA	NA	NA	NA
M4	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	177	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.999994	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	51	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	GTG	synonymous	NA	NA	NA	NA
M4	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	188	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999969	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	62340332	12A2p6	cell line	sgMsh2	62340332	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	71	22	1	0.045454545	exonic	Fkbp15	nonsynonymous SNV	"Fkbp15:NM_001045528:exon6:c.G397A:p.V133I,Fkbp15:NM_001355385:exon6:c.G397A:p.V133I"	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.641392959	2	0.891552	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	54	23	6	0.260869565	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	CCT	synonymous	NA	NA	NA	NA
M4	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	102	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.729860954	2	0.7166898	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	39	13	3	0.230769231	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9783332	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	64	36	5	0.138888889	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	CTA	synonymous	NA	NA	NA	NA
M4	chr4	70448665	12A2p6	cell line	sgMsh2	70448665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	148	3	1	0.333333333	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon4:c.T1079C:p.I360T	4qC2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	74333821	12A2p6	cell line	sgMsh2	74333821	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	34	9	0.264705882	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon9:c.C1079A:p.T360N,Kdm4c:NM_001172095:exon10:c.C1355A:p.T452N,Kdm4c:NM_144787:exon10:c.C1304A:p.T435N"	4qC3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr4	74343488	12A2p6	cell line	sgMsh2	74343488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	99	38	11	0.289473684	exonic	Kdm4c	synonymous SNV	"Kdm4c:NM_001356561:exon12:c.T1674C:p.N558N,Kdm4c:NM_001172095:exon13:c.T1950C:p.N650N,Kdm4c:NM_144787:exon13:c.T1899C:p.N633N"	4qC3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9862053	ATG	synonymous	NA	NA	NA	NA
M4	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	166	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9958196	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	83417779	12A2p6	cell line	sgMsh2	83417779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	30	23	8	0.347826087	exonic	Snapc3	synonymous SNV	"Snapc3:NM_001358795:exon1:c.T27G:p.G9G,Snapc3:NM_029949:exon1:c.T27G:p.G9G"	4qC3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9635259	GTG	synonymous	GGC	8	GGCGGCGG	NA
M4	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	159	5	3	0.6	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr4	85377397	12A2p6	cell line	sgMsh2	85377397	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	69	0	0	NA	exonic	Sh3gl2	nonsynonymous SNV	Sh3gl2:NM_019535:exon5:c.C335A:p.P112H	4qC4	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	89176859	12A2p6	cell line	sgMsh2	89176859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	540	121	0.224074074	exonic	Mtap	nonsynonymous SNV	Mtap:NM_024433:exon7:c.T747G:p.S249R	4qC4	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.368	20	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9356325	GTC	synonymous	NA	NA	NA	NA
M4	chr4	89688332	12A2p6	cell line	sgMsh2	89688332	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.368	20	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T24C:p.R8R	4qC4	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9356325	GTA	synonymous	NA	NA	NA	NA
M4	chr4	94599690	12A2p6	cell line	sgMsh2	94599690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	73	15	0	0	exonic	Gm12657	synonymous SNV	Gm12657:NM_001081019:exon2:c.T306C:p.V102V	4qC5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	9.34E-07	TTG	synonymous	NA	NA	NA	NA
M4	chr4	96307394	12A2p6	cell line	sgMsh2	96307394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	223	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.T1064C:p.L355S	4qC5	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	102	80	10	0.125	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	36	150	32	0.213333333	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	184	129	24	0.186046512	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999961	CGA	synonymous	NA	NA	NA	NA
M4	chr4	99221213	12A2p6	cell line	sgMsh2	99221213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	122	17	4	0.235294118	exonic	Atg4c	nonsynonymous SNV	"Atg4c:NM_001145967:exon5:c.T416C:p.L139P,Atg4c:NM_175029:exon5:c.T416C:p.L139P"	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	113	29	4	0.137931034	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M4	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	146	62	15	0.241935484	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999621	CTG	synonymous	NA	NA	NA	NA
M4	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	92	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr4	106450159	12A2p6	cell line	sgMsh2	106450159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	36	7	0	0	exonic	Pcsk9	nonsynonymous SNV	Pcsk9:NM_153565:exon6:c.T886C:p.Y296H	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	107683625	12A2p6	cell line	sgMsh2	107683625	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	36	0	0	NA	exonic	Dmrtb1	nonsynonymous SNV	Dmrtb1:NM_019872:exon1:c.C538A:p.P180T	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9742046	GGC	nonsynonymous	CTGGCA	22	GCACTGGCCCTGGCACTGGCAC	NA
M4	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	123	66	12	0.181818182	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	TAG	synonymous	GTA	8	GTAGTAGT	NA
M4	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	235	13	3	0.230769231	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9735781	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	108548111	12A2p6	cell line	sgMsh2	108548111	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	90	14	4	0.285714286	exonic	Tut4	synonymous SNV	"Tut4:NM_001379663:exon25:c.T3930C:p.R1310R,Tut4:NM_001379664:exon25:c.T3930C:p.R1310R,Tut4:NM_001379665:exon25:c.T3930C:p.R1310R,Tut4:NM_175472:exon26:c.T3930C:p.R1310R"	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9541552	GTT	synonymous	NA	NA	NA	NA
M4	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	140	21	3	0.142857143	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8045409	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	173	128	32	0.25	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999924	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	126	123	31	0.25203252	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9701925	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr4	112290341	12A2p6	cell line	sgMsh2	112290341	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	0	0	NA	exonic	Skint3	synonymous SNV	"Skint3:NM_177578:exon7:c.C1044A:p.V348V,Skint3:NM_001348354:exon8:c.C912A:p.V304V,Skint3:NM_001102474:exon9:c.C1260A:p.V420V"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	TCT	synonymous	NA	NA	NA	NA
M4	chr4	112389201	12A2p6	cell line	sgMsh2	112389201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	76	0	0	NA	exonic	Skint9	nonsynonymous SNV	Skint9:NM_177864:exon6:c.T713C:p.V238A	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	157	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999803	GCT	synonymous	NA	NA	NA	NA
M4	chr4	113556115	12A2p6	cell line	sgMsh2	113556115	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	exonic	Skint5	stopgain	"Skint5:NM_001167876:exon47:c.G3442T:p.E1148X,Skint5:NM_001167878:exon47:c.G3442T:p.E1148X"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9992654	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	98	25	7	0.28	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.1509	53	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.667491018	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
M4	chr4	115492211	12A2p6	cell line	sgMsh2	115492211	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	123	0	0	NA	exonic	Cyp4a14	synonymous SNV	Cyp4a14:NM_007822:exon6:c.T651G:p.A217A	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9998491	CAG	synonymous	NA	NA	NA	NA
M4	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	204	39	10	0.256410256	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999988	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	117111308	12A2p6	cell line	sgMsh2	117111308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	39	0	0	NA	exonic	Ptch2	nonsynonymous SNV	"Ptch2:NM_001312903:exon18:c.T1913C:p.L638P,Ptch2:NM_008958:exon18:c.T2879C:p.L960P"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9783332	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	117273073	12A2p6	cell line	sgMsh2	117273073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	77	43	4	0.093023256	exonic	Rnf220	stopgain	"Rnf220:NM_001310730:exon10:c.G835T:p.E279X,Rnf220:NM_001310731:exon10:c.G646T:p.E216X,Rnf220:NM_001310729:exon13:c.G970T:p.E324X,Rnf220:NM_025739:exon14:c.G1609T:p.E537X"	4qD1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9926866	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	50	175	40	0.228571429	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M4	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	130	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	119187290	12A2p6	cell line	sgMsh2	119187290	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	72	0	0	NA	exonic	Ermap	nonsynonymous SNV	"Ermap:NM_001369066:exon4:c.T230A:p.F77Y,Ermap:NM_013848:exon4:c.T230A:p.F77Y"	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr4	119226906	12A2p6	cell line	sgMsh2	119226906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	57	65	21	0.323076923	exonic	AU022252	synonymous SNV	AU022252:NM_001012400:exon4:c.T309C:p.A103A	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	CAG	synonymous	NA	NA	NA	NA
M4	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	41	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr4	120468444	12A2p6	cell line	sgMsh2	120468444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	80	28	6	0.214285714	exonic	Scmh1	synonymous SNV	"Scmh1:NM_001355424:exon5:c.T285C:p.N95N,Scmh1:NM_001355423:exon6:c.T357C:p.N119N,Scmh1:NM_001379184:exon6:c.T381C:p.N127N,Scmh1:NM_001159630:exon7:c.T357C:p.N119N,Scmh1:NM_001379186:exon7:c.T285C:p.N95N,Scmh1:NM_013883:exon7:c.T357C:p.N119N,Scmh1:NM_001379185:exon8:c.T357C:p.N119N"	4qD2.1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9980751	ATG	synonymous	NA	NA	NA	NA
M4	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	76	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	254	72	28	0.388888889	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9999972	ATT	synonymous	NA	NA	NA	NA
M4	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	202	150	41	0.273333333	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.813905548	1	0.8735742	CAG	synonymous	GT	8	GTGTGTGT	NA
M4	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	102	6	3	0.5	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	122	182	36	0.197802198	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9488582	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	124914717	12A2p6	cell line	sgMsh2	124914717	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	46	0	0	NA	exonic	Epha10	frameshift deletion	Epha10:NM_001256432:exon15:c.2596delC:p.R868Gfs*9	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	19	3	0.157894737	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993781	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	134	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9996619	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	43	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9828461	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	140	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999458	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	201	45	0.223880597	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	TAG	synonymous	NA	NA	NA	NA
M4	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	108	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	128549242	12A2p6	cell line	sgMsh2	128549242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	24	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon62:c.A9785G:p.Q3262R	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9486338	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	26	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9541507	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	64	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	CAT	synonymous	NA	NA	NA	NA
M4	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	87	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	94	27	3	0.111111111	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.862562945	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr4	129618554	12A2p6	cell line	sgMsh2	129618554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	55	38	8	0.210526316	exonic	Iqcc	nonsynonymous SNV	Iqcc:NM_198026:exon2:c.G124A:p.G42S	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	130951862	12A2p6	cell line	sgMsh2	130951862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	87	0	0	NA	exonic	Matn1	nonsynonymous SNV	Matn1:NM_010769:exon5:c.T826C:p.S276P	4qD2.2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	122	25	3	0.12	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	TTC	synonymous	NA	NA	NA	NA
M4	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	26	22	10	0.454545455	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9541507	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	105	29	5	0.172413793	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995648	ATT	synonymous	NA	NA	NA	NA
M4	chr4	133601284	12A2p6	cell line	sgMsh2	133601284	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	91	9	0	0	exonic	Sfn	nonsynonymous SNV	Sfn:NM_018754:exon1:c.G486T:p.M162I	4qD2.3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	102	30	11	0.366666667	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.526384567	2	0.9505235	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	51	31	2	0.064516129	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.760824752	1	0.6826369	ATG	synonymous	NA	NA	NA	NA
M4	chr4	134853048	12A2p6	cell line	sgMsh2	134853048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	13	57	20	0.350877193	exonic	Maco1	nonsynonymous SNV	Maco1:NM_025382:exon1:c.A70G:p.I24V	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.09421058	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	64	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	41	446	95	0.213004484	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	135969256	12A2p6	cell line	sgMsh2	135969256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	51	79	19	0.240506329	exonic	Lypla2	nonsynonymous SNV	Lypla2:NM_011942:exon9:c.T533C:p.M178T	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	105	196	5	0.025510204	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9898615	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	136946101	12A2p6	cell line	sgMsh2	136946101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	85	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon3:c.A371G:p.H124R	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	120	87	20	0.229885057	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9909509	CTG	synonymous	NA	NA	NA	NA
M4	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	54	41	12	0.292682927	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.989551	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9356325	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	63	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr4	139371766	12A2p6	cell line	sgMsh2	139371766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	25	64	16	0.25	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon20:c.T2550C:p.A850A,Emc1:NM_146157:exon21:c.T2559C:p.A853A"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9514674	CTA	synonymous	NA	NA	NA	NA
M4	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	59	14	6	0.428571429	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	65	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9824163	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	139967366	12A2p6	cell line	sgMsh2	139967366	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	44	0	0	NA	exonic	Klhdc7a	nonsynonymous SNV	Klhdc7a:NM_173427:exon1:c.A269G:p.K90R	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9672	CTT	nonsynonymous	C	5	CCCCC	NA
M4	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	20	7	2	0.285714286	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9356325	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	141382474	12A2p6	cell line	sgMsh2	141382474	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.2	18	7	0	0	exonic	Fam131c	nonsynonymous SNV	Fam131c:NM_001085513:exon5:c.T416C:p.L139P	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.8712939	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	32	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9674904	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	141464352	12A2p6	cell line	sgMsh2	141464352	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	48	12	0.25	exonic	Zbtb17	synonymous SNV	"Zbtb17:NM_001378826:exon7:c.G849A:p.E283E,Zbtb17:NM_001378827:exon7:c.G546A:p.E182E,Zbtb17:NM_009541:exon7:c.G774A:p.E258E,Zbtb17:NM_001378828:exon8:c.G774A:p.E258E"	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9536763	AGA	synonymous	NA	NA	NA	NA
M4	chr4	141623491	12A2p6	cell line	sgMsh2	141623491	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	35	1	0	0	exonic	Slc25a34	nonsynonymous SNV	Slc25a34:NM_001013780:exon1:c.C206T:p.S69F	4qD3	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.765144	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr4	141628016	12A2p6	cell line	sgMsh2	141628016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	68	14	2	0.142857143	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon17:c.T2720G:p.L907R,Plekhm2:NM_001033150:exon18:c.T2780G:p.L927R"	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	141905105	12A2p6	cell line	sgMsh2	141905105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	81	0	0	NA	exonic	Fhad1	nonsynonymous SNV	Fhad1:NM_177868:exon28:c.T3722C:p.L1241P	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	143656547	12A2p6	cell line	sgMsh2	143656547	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	231	0	0	NA	exonic	Pramel22	nonsynonymous SNV	Pramel22:NM_001126325:exon2:c.G101A:p.G34D	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9999481	ACC	nonsynonymous	A	5	AAAAA	NA
M4	chr4	143697033	12A2p6	cell line	sgMsh2	143697033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	154	0	0	NA	exonic	Pramel23	synonymous SNV	Pramel23:NM_001356572:exon4:c.A1185G:p.L395L	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999764	GTA	synonymous	NA	NA	NA	NA
M4	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	208	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999991	CCT	synonymous	NA	NA	NA	NA
M4	chr4	143811579	12A2p6	cell line	sgMsh2	143811579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	122	0	0	NA	exonic	Pramel26	nonsynonymous SNV	"Pramel26:NM_001005371:exon3:c.T821C:p.I274T,Pramel26:NM_001347257:exon3:c.T821C:p.I274T"	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr4	144158165	12A2p6	cell line	sgMsh2	144158165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	198	0	0	NA	exonic	Oog3	synonymous SNV	Oog3:NM_201258:exon4:c.A1200G:p.T400T	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999983	CTG	synonymous	NA	NA	NA	NA
M4	chr4	144196215	12A2p6	cell line	sgMsh2	144196215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	123	0	0	NA	exonic	Oog2	nonsynonymous SNV	Oog2:NM_198661:exon5:c.T1049C:p.L350S	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	144376938	12A2p6	cell line	sgMsh2	144376938	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	160	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon2:c.A617C:p.E206A	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999835	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	144555570	12A2p6	cell line	sgMsh2	144555570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	146	0	0	NA	exonic	Aadacl4fm2	synonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.A651G:p.Q217Q	4qE1	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999621	CTT	synonymous	NA	NA	NA	NA
M4	chr4	148012708	12A2p6	cell line	sgMsh2	148012708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	87	13	0	0	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon18:c.A1892G:p.H631R	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	50	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr4	151143907	12A2p6	cell line	sgMsh2	151143907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	39	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A2467G:p.I823V	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.694473756	1	0.5331407	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr4	151143921	12A2p6	cell line	sgMsh2	151143921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	45	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A2453G:p.Q818R	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9847424	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	71	9	0	0	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr4	154081548	12A2p6	cell line	sgMsh2	154081548	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	14	0	0	NA	exonic	Trp73	nonsynonymous SNV	"Trp73:NM_001126330:exon2:c.T63G:p.S21R,Trp73:NM_001126331:exon2:c.T63G:p.S21R,Trp73:NM_011642:exon4:c.T186G:p.S62R"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9100394	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr4	154269992	12A2p6	cell line	sgMsh2	154269992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	41	0	0	NA	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon33:c.C4235A:p.P1412H	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.734284353	1	0.6387544	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr4	154282888	12A2p6	cell line	sgMsh2	154282888	C	T	SNV	Mutect2;Vardict	2	0.09	51	63	0	0	exonic	Arhgef16	synonymous SNV	Arhgef16:NM_001112744:exon7:c.G1059A:p.R353R	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.398105975	3	0.5036861	GCC	synonymous	NA	NA	NA	NA
M4	chr4	154291298	12A2p6	cell line	sgMsh2	154291298	G	T	SNV	Mutect2;Vardict	2	0.117	32	32	7	0.21875	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.C238A:p.P80T	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.517537767	2	0.07484222	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr4	154340784	12A2p6	cell line	sgMsh2	154340784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	86	0	0	NA	exonic	Prdm16	nonsynonymous SNV	"Prdm16:NM_001177995:exon9:c.T2546C:p.L849P,Prdm16:NM_001291026:exon9:c.T2540C:p.L847P,Prdm16:NM_001291029:exon9:c.T2546C:p.L849P,Prdm16:NM_027504:exon9:c.T2543C:p.L848P"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	49	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.619275961	2	0.7845884	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	102	7	2	0.285714286	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	67	3	1	0.333333333	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	155221584	12A2p6	cell line	sgMsh2	155221584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	67	87	18	0.206896552	exonic	Ski	nonsynonymous SNV	"Ski:NM_001357191:exon1:c.T937C:p.Y313H,Ski:NM_011385:exon1:c.T937C:p.Y313H"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	174	42	10	0.238095238	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999928	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr4	155659780	12A2p6	cell line	sgMsh2	155659780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	23	24	4	0.166666667	exonic	Mib2	nonsynonymous SNV	"Mib2:NM_001369162:exon4:c.A424G:p.T142A,Mib2:NM_001256107:exon5:c.A424G:p.T142A,Mib2:NM_001369164:exon5:c.A424G:p.T142A,Mib2:NM_001369166:exon5:c.A121G:p.T41A,Mib2:NM_001369167:exon5:c.A424G:p.T142A,Mib2:NM_001369168:exon5:c.A424G:p.T142A,Mib2:NM_145124:exon5:c.A424G:p.T142A,Mib2:NM_001256108:exon6:c.A424G:p.T142A,Mib2:NM_001369161:exon6:c.A424G:p.T142A,Mib2:NM_001369163:exon6:c.A424G:p.T142A,Mib2:NM_001369165:exon6:c.A424G:p.T142A"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.945642	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr4	155661259	12A2p6	cell line	sgMsh2	155661259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	79	21	5	0.238095238	exonic	Mib2	nonsynonymous SNV	"Mib2:NM_001369162:exon2:c.G94A:p.G32S,Mib2:NM_001256107:exon3:c.G94A:p.G32S,Mib2:NM_001369164:exon3:c.G94A:p.G32S,Mib2:NM_001369167:exon3:c.G94A:p.G32S,Mib2:NM_001369168:exon3:c.G94A:p.G32S,Mib2:NM_145124:exon3:c.G94A:p.G32S,Mib2:NM_001256108:exon4:c.G94A:p.G32S,Mib2:NM_001369161:exon4:c.G94A:p.G32S,Mib2:NM_001369163:exon4:c.G94A:p.G32S,Mib2:NM_001369165:exon4:c.G94A:p.G32S"	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr4	155784399	12A2p6	cell line	sgMsh2	155784399	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.556	16	0	0	NA	exonic	Tmem88b	synonymous SNV	Tmem88b:NM_001033394:exon2:c.C391T:p.L131L	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	2	1	1	0.9195064	AGG	synonymous	GGAG	8	GGAGGGAG	NA
M4	chr4	155841784	12A2p6	cell line	sgMsh2	155841784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	48	35	15	0.428571429	exonic	Mxra8	nonsynonymous SNV	Mxra8:NM_024263:exon5:c.G598A:p.A200T	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9862908	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr4	155842017	12A2p6	cell line	sgMsh2	155842017	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	93	32	1	0.03125	exonic	Mxra8	stopgain	Mxra8:NM_024263:exon5:c.C831A:p.Y277X	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	93	81	15	0.185185185	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	78	24	5	0.208333333	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	1	1	0.9978322	CAA	synonymous	NA	NA	NA	NA
M4	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	142	2	0	0	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8043758	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	156	18	10	0.555555556	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999791	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	134	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999225	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	132	30	4	0.133333333	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999127	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	129	36	7	0.194444444	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	55	81	40	0.49382716	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9915293	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	45	11	5	0.454545455	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	111	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.774094951	1	0.5917694	CTT	synonymous	NA	NA	NA	NA
M4	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	134	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999225	TAG	synonymous	NA	NA	NA	NA
M4	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	59	146	31	0.212328767	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	CTG	synonymous	NA	NA	NA	NA
M4	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9994402	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	127	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998825	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	113	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9997296	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr5	14714463	12A2p6	cell line	sgMsh2	14714463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	110	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.A12949G:p.R4317G,Pclo:NM_011995:exon7:c.A12949G:p.R4317G"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	14790376	12A2p6	cell line	sgMsh2	14790376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	170	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon18:c.T14144C:p.L4715S,Pclo:NM_011995:exon18:c.T14144C:p.L4715S"	5qA1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999815	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	14913604	12A2p6	cell line	sgMsh2	14913604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	168	0	0	NA	exonic	Gm9758	nonsynonymous SNV	Gm9758:NM_198666:exon2:c.A209G:p.K70R	5qA2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999898	CTT	nonsynonymous	T	5	TTTTT	NA
M4	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	205	111	34	0.306306306	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999989	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr5	23500293	12A2p6	cell line	sgMsh2	23500293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	166	85	17	0.2	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon23:c.A3820T:p.S1274C	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9958196	AAG	nonsynonymous	GA	10	GAGAGAGAGA	NA
M4	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.69	17	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.923869	CAT	synonymous	NA	NA	NA	NA
M4	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	47	12	7	0.583333333	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.703320555	2	0.5015837	CAC	synonymous	NA	NA	NA	NA
M4	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	44	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	CCT	synonymous	NA	NA	NA	NA
M4	chr5	24593239	12A2p6	cell line	sgMsh2	24593239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	68	8	5	0.625	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon11:c.A1282G:p.S428G	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9960754	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.114	35	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.504267568	2	0.09323849	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	154	9	4	0.444444444	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999764	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	230	16	5	0.3125	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9999846	GAA	synonymous	NA	NA	NA	NA
M4	chr5	27262319	12A2p6	cell line	sgMsh2	27262319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	49	0	0	NA	exonic	Dpp6	nonsynonymous SNV	Dpp6:NM_001136060:exon1:c.G15T:p.K5N	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	89	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988726	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	61	4	0	0	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	93	20	0.215053763	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9891092	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.642	82	134	41	0.305970149	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M4	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	164	96	17	0.177083333	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M4	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	164	98	16	0.163265306	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M4	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	61	162	35	0.216049383	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9940585	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	31487300	12A2p6	cell line	sgMsh2	31487300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	29	0	0	NA	exonic	4930548H24Rik	synonymous SNV	4930548H24Rik:NM_026296:exon2:c.A396G:p.K132K	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9613722	AAG	synonymous	NA	NA	NA	NA
M4	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	62	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	222	31	14	0.451612903	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999996	CAG	synonymous	NA	NA	NA	NA
M4	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	203	32	4	0.125	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999987	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M4	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	128	4	2	0.5	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998893	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	33921861	12A2p6	cell line	sgMsh2	33921861	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	81	49	9	0.183673469	exonic	Nelfa	stopgain	Nelfa:NM_011914:exon2:c.G367T:p.E123X	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.998172	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr5	34000987	12A2p6	cell line	sgMsh2	34000987	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	55	1	0	0	exonic	Nat8l	nonsynonymous SNV	Nat8l:NM_001001985:exon3:c.C740T:p.A247V	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	181	23	3	0.130434783	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999953	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr5	34905586	12A2p6	cell line	sgMsh2	34905586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	72	21	7	0.333333333	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon63:c.A8561G:p.H2854R	5qB2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	36483906	12A2p6	cell line	sgMsh2	36483906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	11	11	7	0.636363636	exonic	Tada2b	nonsynonymous SNV	Tada2b:NM_001170454:exon1:c.A152G:p.Y51C	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.8937328	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	51	40	9	0.225	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	38351287	12A2p6	cell line	sgMsh2	38351287	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	141	8	3	0.375	exonic	Slc2a9	synonymous SNV	"Slc2a9:NM_001102415:exon10:c.A1092T:p.A364A,Slc2a9:NM_145559:exon11:c.A1047T:p.A349A,Slc2a9:NM_001012363:exon12:c.A1368T:p.A456A,Slc2a9:NM_001102414:exon12:c.A1413T:p.A471A"	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	CTG	synonymous	NA	NA	NA	NA
M4	chr5	41806753	12A2p6	cell line	sgMsh2	41806753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	60	56	4	0.071428571	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon16:c.G8097A:p.E2699E,Bod1l:NM_001310601:exon16:c.G8097A:p.E2699E"	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.79178855	1	0.7705583	CCT	synonymous	NA	NA	NA	NA
M4	chr5	48189448	12A2p6	cell line	sgMsh2	48189448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	130	32	6	0.1875	exonic	Slit2	synonymous SNV	"Slit2:NM_001291227:exon8:c.T631C:p.L211L,Slit2:NM_001291228:exon8:c.T631C:p.L211L,Slit2:NM_178804:exon8:c.T631C:p.L211L"	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.999712	CTT	synonymous	NA	NA	NA	NA
M4	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	114	86	28	0.325581395	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9992363	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	50009459	12A2p6	cell line	sgMsh2	50009459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	169	95	23	0.242105263	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon6:c.A550G:p.I184V	5qB3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.99969	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	65	474	92	0.194092827	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Vardict	2	0.138	33	142	40	0.281690141	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.610429161	2	0.6126784	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	53652727	12A2p6	cell line	sgMsh2	53652727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	194	76	18	0.236842105	exonic	Rbpj	nonsynonymous SNV	"Rbpj:NM_001080927:exon9:c.C1009T:p.P337S,Rbpj:NM_001080928:exon9:c.C1003T:p.P335S,Rbpj:NM_001359152:exon9:c.C1009T:p.P337S,Rbpj:NM_009035:exon9:c.C1126T:p.P376S,Rbpj:NM_001277116:exon11:c.C1069T:p.P357S"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999978	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	146	149	36	0.241610738	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	0.7707961	GTT	nonsynonymous	G	5	GGGGG	NA
M4	chr5	57721014	12A2p6	cell line	sgMsh2	57721014	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	178	58	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.C1910A:p.P637H,Pcdh7:NM_001310606:exon1:c.C1910A:p.P637H,Pcdh7:NM_001310608:exon1:c.C1910A:p.P637H,Pcdh7:NM_018764:exon1:c.C1910A:p.P637H"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999944	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	166	47	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9997783	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	57721784	12A2p6	cell line	sgMsh2	57721784	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	131	36	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.A2680C:p.I894L,Pcdh7:NM_001310606:exon1:c.A2680C:p.I894L,Pcdh7:NM_001310608:exon1:c.A2680C:p.I894L,Pcdh7:NM_018764:exon1:c.A2680C:p.I894L"	5qC1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	175	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999889	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	70	1138	290	0.25483304	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.536	72	112	58	0.517857143	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9969044	GTA	synonymous	NA	NA	NA	NA
M4	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	111	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	101	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9985401	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	156	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	TAT	synonymous	NA	NA	NA	NA
M4	chr5	73104745	12A2p6	cell line	sgMsh2	73104745	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	171	63	26	0.412698413	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon19:c.T1678C:p.C560R	5qC3.2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999914	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	125	49	17	0.346938776	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9998676	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.771	80	34	15	0.441176471	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M4	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	87	7	1	0.142857143	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	ATG	synonymous	NA	NA	NA	NA
M4	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	84	157	38	0.242038217	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.539654766	2	0.9589721	ATT	synonymous	NA	NA	NA	NA
M4	chr5	83354856	12A2p6	cell line	sgMsh2	83354856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	167	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon1:c.G145A:p.A49T	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999891	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr5	84331598	12A2p6	cell line	sgMsh2	84331598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	119	0	0	NA	exonic	Epha5	synonymous SNV	Epha5:NM_007937:exon3:c.T546C:p.D182D	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	CAT	synonymous	NA	NA	NA	NA
M4	chr5	86303666	12A2p6	cell line	sgMsh2	86303666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	109	0	0	NA	exonic	Tmprss11d	nonsynonymous SNV	Tmprss11d:NM_145561:exon10:c.T1199C:p.V400A	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	81	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9981861	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	126	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr5	87001106	12A2p6	cell line	sgMsh2	87001106	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	164	3	2	0.666666667	exonic	Ugt2b35	nonsynonymous SNV	Ugt2b35:NM_172881:exon1:c.T215G:p.L72R	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.999987	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	137	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9981125	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	137	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999352	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	119	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.8712929	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	112	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.813905548	1	0.8500339	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	89571680	12A2p6	cell line	sgMsh2	89571680	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	121	0	0	NA	exonic	Npffr2	nonsynonymous SNV	Npffr2:NM_133192:exon3:c.A427G:p.R143G	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.7404837	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	134	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8321129	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	146	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999621	AAG	synonymous	NA	NA	NA	NA
M4	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	143	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999547	AAC	synonymous	A	5	AAAAA	NA
M4	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	155	2	1	0.5	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999778	CTG	synonymous	NA	NA	NA	NA
M4	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	115	703	349	0.496443812	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.99976	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	262	87	12	0.137931034	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	3.90E-08	CTG	synonymous	NA	NA	NA	NA
M4	chr5	96709879	12A2p6	cell line	sgMsh2	96709879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	111	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon44:c.A6031T:p.R2011W	5qE3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9996955	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	99232321	12A2p6	cell line	sgMsh2	99232321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	261	144	38	0.263888889	exonic	Rasgef1b	nonsynonymous SNV	"Rasgef1b:NM_145839:exon7:c.T806C:p.V269A,Rasgef1b:NM_181318:exon7:c.T803C:p.V268A"	5qE3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.999994	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	61	190	44	0.231578947	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8233803	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	100817984	12A2p6	cell line	sgMsh2	100817984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	145	46	10	0.217391304	exonic	Abraxas1	nonsynonymous SNV	Abraxas1:NM_172405:exon3:c.A193G:p.I65V	5qE4	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.5564361	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr5	101906129	12A2p6	cell line	sgMsh2	101906129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	120	21	3	0.142857143	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon30:c.A4824G:p.I1608M	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998218	TTA	nonsynonymous	TTAT	10	TTATTTATTT	NA
M4	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	164	49	11	0.224489796	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.888231	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	141	36	7	0.194444444	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999489	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	230	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9956891	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	170	35	13	0.371428571	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999909	AAG	synonymous	NA	NA	NA	NA
M4	chr5	104815386	12A2p6	cell line	sgMsh2	104815386	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	159	9	0	0	exonic	Zfp951	nonsynonymous SNV	Zfp951:NM_001039231:exon5:c.G313T:p.G105C	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr5	106618268	12A2p6	cell line	sgMsh2	106618268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	112	88	20	0.227272727	exonic	Zfp644	nonsynonymous SNV	"Zfp644:NM_001363323:exon6:c.T3772C:p.F1258L,Zfp644:NM_001363320:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363321:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363322:exon7:c.T3814C:p.F1272L,Zfp644:NM_026856:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363319:exon8:c.T3847C:p.F1283L,Zfp644:NM_001363318:exon10:c.T3847C:p.F1283L"	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9971449	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	129	21	6	0.285714286	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9998499	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	110	17	12	0.705882353	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9996768	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	52	9	2	0.222222222	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9898897	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	88	15	2	0.133333333	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	110324597	12A2p6	cell line	sgMsh2	110324597	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	151	20	6	0.3	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon36:c.G4725T:p.K1575N	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9973649	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr5	110720814	12A2p6	cell line	sgMsh2	110720814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	106	86	49	0.569767442	exonic	Ep400	synonymous SNV	"Ep400:NM_173066:exon12:c.T2743C:p.L915L,Ep400:NM_029337:exon13:c.T2851C:p.L951L"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995899	AAC	synonymous	NA	NA	NA	NA
M4	chr5	111224041	12A2p6	cell line	sgMsh2	111224041	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	83	5	1	0.2	exonic	Ttc28	frameshift deletion	Ttc28:NM_001267622:exon7:c.2355delG:p.E787Sfs*34	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.95103094	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M4	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	81	82	26	0.317073171	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	GTG	synonymous	NA	NA	NA	NA
M4	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	79	1	0	0	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.548	56	99	38	0.383838384	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.992015	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	47	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9864319	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	63	24	6	0.25	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	CTT	synonymous	NA	NA	NA	NA
M4	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	28	3	1	0.333333333	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9590962	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	55	21	0	0	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.676780157	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4	chr5	121576473	12A2p6	cell line	sgMsh2	121576473	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	102	1050	202	0.192380952	exonic	Aldh2	nonsynonymous SNV	"Aldh2:NM_001308450:exon5:c.G542A:p.C181Y,Aldh2:NM_009656:exon5:c.G542A:p.C181Y"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9273621	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr5	121828780	12A2p6	cell line	sgMsh2	121828780	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	17	7	1	0.142857143	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.T270A:p.T90T,Sh2b3:NM_008507:exon2:c.T270A:p.T90T,Sh2b3:NM_001306126:exon3:c.T270A:p.T90T,Sh2b3:NM_001306127:exon3:c.T270A:p.T90T"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.923869	CAG	synonymous	NA	NA	NA	NA
M4	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	73	13	3	0.230769231	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	123174447	12A2p6	cell line	sgMsh2	123174447	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	92	0	0	NA	exonic	Hpd	synonymous SNV	Hpd:NM_008277:exon12:c.G858T:p.T286T	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.62369936	2	0.9743134	CCG	synonymous	NA	NA	NA	NA
M4	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	127	34	10	0.294117647	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9998825	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	148	60	16	0.266666667	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	82	60	13	0.216666667	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	108	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9930631	GTG	nonsynonymous	G	5	GGGGG	NA
M4	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	62	1	0	0	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9944	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr5	124123607	12A2p6	cell line	sgMsh2	124123607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	45	2	1	0.5	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon19:c.C2891T:p.S964F,Pitpnm2:NM_011256:exon19:c.C2729T:p.S910F"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9766539	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	139	169	43	0.25443787	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999425	TAC	synonymous	NA	NA	NA	NA
M4	chr5	124573100	12A2p6	cell line	sgMsh2	124573100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	101	203	107	0.527093596	exonic	Eif2b1	nonsynonymous SNV	Eif2b1:NM_145371:exon7:c.A605G:p.E202G	5qF	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9994478	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr5	127609024	12A2p6	cell line	sgMsh2	127609024	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	53	20	1	0.05	exonic	Slc15a4	frameshift deletion	Slc15a4:NM_133895:exon2:c.593delT:p.F198Sfs*15	5qG1.2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	63	24	2	0.083333333	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9947219	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	156	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	TAC	synonymous	NA	NA	NA	NA
M4	chr5	135852233	12A2p6	cell line	sgMsh2	135852233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	24	0	0	NA	exonic	Srrm3	nonsynonymous SNV	Srrm3:NM_021403:exon4:c.A386G:p.Y129C	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9486338	TAC	nonsynonymous	ACCC	8	ACCCACCC	NA
M4	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	178	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999944	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr5	137112773	12A2p6	cell line	sgMsh2	137112773	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	69	29	0	0	exonic	Trim56	nonsynonymous SNV	Trim56:NM_201373:exon3:c.T1888G:p.S630A	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.269827383	3	0.9861785	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	96	1	0	0	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992565	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	145	51	9	0.176470588	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	128	48	20	0.416666667	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9998893	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr5	139353881	12A2p6	cell line	sgMsh2	139353881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	0	0	NA	exonic	Cyp2w1	synonymous SNV	Cyp2w1:NM_001160265:exon2:c.A225G:p.G75G	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	GAT	synonymous	NA	NA	NA	NA
M4	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	92	85	13	0.152941176	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	CTT	synonymous	NA	NA	NA	NA
M4	chr5	140785542	12A2p6	cell line	sgMsh2	140785542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	36	65	16	0.246153846	exonic	Gna12	nonsynonymous SNV	Gna12:NM_010302:exon2:c.A374G:p.H125R	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9337964	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	142878786	12A2p6	cell line	sgMsh2	142878786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	51	12	2	0.166666667	exonic	Fbxl18	synonymous SNV	Fbxl18:NM_001033312:exon4:c.C1839T:p.R613R	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9377637	TGC	synonymous	NA	NA	NA	NA
M4	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	68	7433	1584	0.213103727	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M4	chr5	143315036	12A2p6	cell line	sgMsh2	143315036	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	17	6	0.352941176	exonic	E130309D02Rik	nonsynonymous SNV	E130309D02Rik:NM_172726:exon1:c.T59G:p.V20G	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	1	0.9635259	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.273	35	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4	chr5	143899235	12A2p6	cell line	sgMsh2	143899235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	55	68	11	0.161764706	exonic	Eif2ak1	synonymous SNV	Eif2ak1:NM_013557:exon13:c.A1626G:p.Q542Q	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9845982	AAA	synonymous	NA	NA	NA	NA
M4	chr5	144173959	12A2p6	cell line	sgMsh2	144173959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	54	43	11	0.255813953	exonic	Lmtk2	nonsynonymous SNV	Lmtk2:NM_001081109:exon11:c.A1496G:p.Y499C	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9902851	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	99	594	127	0.213804714	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9993781	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	94	557	129	0.231597846	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9991626	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	218	51	24	0.470588235	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999995	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	82	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.5574304	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	116	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344382-151647482	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.829995	TAC	synonymous	NA	NA	NA	NA
M4	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.59	86	77	5	0.064935065	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M4	chr6	3372931	12A2p6	cell line	sgMsh2	3372931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	202	45	4	0.088888889	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.A4329G:p.I1443M	6qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	203	107	16	0.14953271	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.928913941	1	0.9998914	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	132	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.539654766	2	0.9801179	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M4	chr6	3692638	12A2p6	cell line	sgMsh2	3692638	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	126	0	0	NA	exonic	Calcr	synonymous SNV	"Calcr:NM_001042725:exon13:c.G1104T:p.L368L,Calcr:NM_001355192:exon13:c.G1104T:p.L368L,Calcr:NM_001377018:exon14:c.G1215T:p.L405L,Calcr:NM_007588:exon14:c.G1215T:p.L405L"	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.871409745	1	0.9819758	GCA	synonymous	NA	NA	NA	NA
M4	chr6	4522458	12A2p6	cell line	sgMsh2	4522458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	104	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon24:c.C1385T:p.P462L	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.420222973	3	0.7958798	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	135	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.650239759	2	0.9933943	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	177	72	22	0.305555556	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	2	0.6846757	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M4	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	251	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.685626956	2	0.9996214	TGC	synonymous	NA	NA	NA	NA
M4	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	41	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.760824752	1	0.7122264	AAG	synonymous	NA	NA	NA	NA
M4	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.139	37	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.614852561	2	0.6574343	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	145	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.535231366	2	0.978591	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	211	385	61	0.158441558	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.614852561	2	0.9999694	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.146	144	544	77	0.141544118	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.645816359	2	0.9964589	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M4	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	97	340	50	0.147058824	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.659086558	2	0.948748	CAC	synonymous	NA	NA	NA	NA
M4	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1273	110	67	0	0	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.563098784	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M4	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	112	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9871568	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M4	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	245	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.393682575	3	0.9998271	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	104	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.535231366	2	0.9653081	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	14717889	12A2p6	cell line	sgMsh2	14717889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	254	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.G3025A:p.G1009S	6qA1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.725437554	2	0.9924255	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	161	75	3	0.04	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.849292746	1	0.9733491	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	171	983	147	0.149542218	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9992585	GTT	synonymous	NA	NA	NA	NA
M4	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	156	954	154	0.161425577	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.756401352	2	0.7174691	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	302	1	0	0	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	1	0.9987459	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	160	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	2	6.98E-09	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.647	174	121	86	0.710743802	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	4	1	1	0.9999928	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M4	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	200	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9999985	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr6	24743656	12A2p6	cell line	sgMsh2	24743656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	181	0	0	NA	exonic	Hyal6	synonymous SNV	Hyal6:NM_028920:exon4:c.T1350C:p.P450P	6qA3.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.734284353	2	0.9277813	CTG	synonymous	NA	NA	NA	NA
M4	chr6	24876131	12A2p6	cell line	sgMsh2	24876131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	153	0	0	NA	exonic	Hyal5	nonsynonymous SNV	Hyal5:NM_028957:exon2:c.T2C:p.M1T	6qA3.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62369936	2	0.9991116	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	25688581	12A2p6	cell line	sgMsh2	25688581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	110	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon1:c.A516C:p.R172S	6qA3.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	1	7.46E-07	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	29399449	12A2p6	cell line	sgMsh2	29399449	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	63	11	2	0.181818182	exonic	Ccdc136	nonsynonymous SNV	"Ccdc136:NM_001201378:exon2:c.G139T:p.G47W,Ccdc136:NM_145574:exon2:c.G139T:p.G47W,Ccdc136:NM_001347071:exon3:c.G415T:p.G139W,Ccdc136:NM_001347072:exon3:c.G415T:p.G139W,Ccdc136:NM_001347073:exon3:c.G415T:p.G139W"	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.884679944	1	0.9526041	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.17	53	1	0	0	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.751977952	1	0.6440928	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	30585022	12A2p6	cell line	sgMsh2	30585022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	55	0	0	NA	exonic	Cpa4	synonymous SNV	Cpa4:NM_027926:exon9:c.T804C:p.S268S	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9915293	GTG	synonymous	NA	NA	NA	NA
M4	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	129	124	23	0.185483871	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.9513854	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	262	244	42	0.172131148	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9999972	AAC	nonsynonymous	A	5	AAAAA	NA
M4	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	143	1	0	0	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.964301139	1	0.9997816	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	37334513	12A2p6	cell line	sgMsh2	37334513	G	A	SNV	Mutect2;MuSe;Vardict	3	0.181	60	144	0	0	exonic	Creb3l2	nonsynonymous SNV	Creb3l2:NM_178661:exon11:c.C1340T:p.A447V	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	1	0.7981902	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr6	38298021	12A2p6	cell line	sgMsh2	38298021	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	103	4	1	0.25	exonic	Zc3hav1l	synonymous SNV	Zc3hav1l:NM_172467:exon2:c.G444A:p.G148G	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.955454339	1	0.9979881	GCC	synonymous	C	5	CCCCC	NA
M4	chr6	38387600	12A2p6	cell line	sgMsh2	38387600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	310	27	0	0	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon4:c.T238C:p.Y80H	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.9999949	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	214	7	0	0	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.548501565	2	0.9968059	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	371	51	7	0.137254902	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.703320555	2	0.9999675	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	65	229	33	0.144104803	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.78736515	1	0.7502363	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M4	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	48	3	0	0	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.490997369	2	0.8352657	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	308	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.659086558	2	0.9999964	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	197	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.495420768	2	0.79271	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	176	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9873851	CTT	synonymous	NA	NA	NA	NA
M4	chr6	40929472	12A2p6	cell line	sgMsh2	40929472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	200	0	0	NA	exonic	1700074P13Rik	synonymous SNV	"1700074P13Rik:NM_001361930:exon2:c.T9C:p.T3T,1700074P13Rik:NM_028550:exon3:c.T9C:p.T3T"	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.725437554	2	0.9713195	AAG	synonymous	A	5	AAAAA	NA
M4	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	481	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	1	0.6411862	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	169	3	1	0.333333333	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.539654766	2	0.9878275	TTG	synonymous	NA	NA	NA	NA
M4	chr6	41697358	12A2p6	cell line	sgMsh2	41697358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	96	0	0	NA	exonic	Kel	synonymous SNV	Kel:NM_032540:exon10:c.A1137G:p.R379R	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.712167355	2	0.7873632	GTC	synonymous	NA	NA	NA	NA
M4	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	56	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.495420768	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4	chr6	42350378	12A2p6	cell line	sgMsh2	42350378	A	T	SNV	Mutect2;Vardict	2	0.168	20	62	11	0.177419355	exonic	Zyx	nonsynonymous SNV	"Zyx:NM_001289617:exon2:c.A110T:p.N37I,Zyx:NM_001289618:exon2:c.A110T:p.N37I,Zyx:NM_001289619:exon2:c.A110T:p.N37I,Zyx:NM_011777:exon2:c.A110T:p.N37I"	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.743131153	1	0.7461691	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	147	146	22	0.150684932	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.813905548	1	0.8595907	ACG	synonymous	NA	NA	NA	NA
M4	chr6	42400778	12A2p6	cell line	sgMsh2	42400778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	208	0	0	NA	exonic	Tas2r143	nonsynonymous SNV	Tas2r143:NM_001001452:exon1:c.T541C:p.S181P	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9999475	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	42471981	12A2p6	cell line	sgMsh2	42471981	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	335	0	0	NA	exonic	Olfr457	synonymous SNV	Olfr457:NM_146987:exon1:c.C196T:p.L66L	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	0.9999999	AGG	synonymous	NA	NA	NA	NA
M4	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	97	78	7	0.08974359	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.769671551	1	0.5938705	ATG	synonymous	NA	NA	NA	NA
M4	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	108	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.94660754	1	0.9978526	ATG	nonsynonymous	G	5	GGGGG	NA
M4	chr6	42927635	12A2p6	cell line	sgMsh2	42927635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	242	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.T403C:p.W135R	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62369936	2	0.9999932	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	2	0.9421954	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	363	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	4.47E-09	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	43274065	12A2p6	cell line	sgMsh2	43274065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	135	453	78	0.17218543	exonic	Arhgef5	synonymous SNV	Arhgef5:NM_133674:exon2:c.T1749C:p.T583T	6qB2.1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.455610171	3	7.50E-07	CTG	synonymous	NA	NA	NA	NA
M4	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	152	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.63254616	2	0.9986733	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	150	5	0	0	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.544078165	2	0.9878939	TAG	synonymous	NA	NA	NA	NA
M4	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	41	16	2	0.125	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.645816359	2	0.007720426	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	45	32	6	0.1875	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.769671551	1	0.7257332	GTG	synonymous	NA	NA	NA	NA
M4	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	107	6	0	0	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	0.981994738	1	0.9993007	CCC	synonymous	NA	NA	NA	NA
M4	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	77	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.924490541	1	0.9863614	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	85	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.672356757	2	0.8836866	GTC	synonymous	NA	NA	NA	NA
M4	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	59	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.79178855	1	0.7713699	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	139	2	1	0.5	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.8587218	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	48835581	12A2p6	cell line	sgMsh2	48835581	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	181	45	2	0.044444444	exonic	Tmem176b	nonsynonymous SNV	"Tmem176b:NM_001164207:exon5:c.T449A:p.V150D,Tmem176b:NM_001164208:exon5:c.T449A:p.V150D,Tmem176b:NM_001286652:exon5:c.T449A:p.V150D,Tmem176b:NM_023056:exon5:c.T449A:p.V150D,Tmem176b:NM_001164209:exon6:c.T449A:p.V150D,Tmem176b:NM_001286651:exon6:c.T449A:p.V150D"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	2	0.9641902	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	49437428	12A2p6	cell line	sgMsh2	49437428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	150	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon12:c.T1426C:p.F476L,Stk31:NM_029916:exon12:c.T1495C:p.F499L"	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.716590754	2	0.935749	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	50222875	12A2p6	cell line	sgMsh2	50222875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	105	15	2	0.133333333	exonic	Gsdme	synonymous SNV	Gsdme:NM_018769:exon6:c.T723C:p.H241H	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.9923981	CAT	synonymous	NA	NA	NA	NA
M4	chr6	50222898	12A2p6	cell line	sgMsh2	50222898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	102	15	1	0.066666667	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon6:c.T700A:p.F234I	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.676780157	2	0.9305062	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	115	38	4	0.105263158	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.915643742	1	0.9952551	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	24	7	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.875833144	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr6	51451075	12A2p6	cell line	sgMsh2	51451075	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.14	97	46	6	0.130434783	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon2:c.A616G:p.T206A	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.619275961	2	0.9824339	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	51457447	12A2p6	cell line	sgMsh2	51457447	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	277	52	8	0.153846154	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.C986A:p.P329H	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.734284353	2	0.9909567	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	51457902	12A2p6	cell line	sgMsh2	51457902	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	215	32	4	0.125	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.T1441G:p.S481A	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.897950143	1	0.9994627	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	51478452	12A2p6	cell line	sgMsh2	51478452	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	113	6	1	0.166666667	exonic	Cbx3	nonsynonymous SNV	"Cbx3:NM_001355002:exon4:c.G182T:p.W61L,Cbx3:NM_007624:exon4:c.G182T:p.W61L"	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.751977952	2	0.6031934	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	53068567	12A2p6	cell line	sgMsh2	53068567	T	C	SNV	Mutect2;Vardict	2	0.231	13	0	0	NA	exonic	Jazf1	nonsynonymous SNV	Jazf1:NM_173406:exon1:c.A1G:p.M1V	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.09421058	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	46	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9856116	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	55679064	12A2p6	cell line	sgMsh2	55679064	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	110	0	0	NA	exonic	Neurod6	nonsynonymous SNV	Neurod6:NM_009717:exon2:c.C587T:p.A196V	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.747554552	2	0.626693	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	167	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.566195164	2	0.9977753	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	56851461	12A2p6	cell line	sgMsh2	56851461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	221	297	20	0.067340067	exonic	Fkbp9	synonymous SNV	Fkbp9:NM_012056:exon4:c.T657C:p.R219R	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.9997425	GTA	synonymous	NA	NA	NA	NA
M4	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	369	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.844869346	1	0.9970425	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	271	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.818328948	1	0.9208604	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	160	13	0	0	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.982817	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	185	4	0	0	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.928913941	1	0.9997862	GAC	synonymous	NA	NA	NA	NA
M4	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	176	21	0	0	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.196	184	24	0	0	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.866986345	1	0.992625	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	363	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	3.99E-09	GTA	nonsynonymous	T	5	TTTTT	NA
M4	chr6	58944196	12A2p6	cell line	sgMsh2	58944196	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.12	132	0	0	NA	exonic	Fam13a	frameshift deletion	Fam13a:NM_153574:exon15:c.1581delC:p.S528Pfs*23	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.530807966	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4	chr6	59210223	12A2p6	cell line	sgMsh2	59210223	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	145	15	2	0.133333333	exonic	Tigd2	nonsynonymous SNV	Tigd2:NM_001081145:exon2:c.G74A:p.G25D	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.743131153	2	0.7947944	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	161	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.375988976	3	0.9977192	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	155	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.47330377	2	0.5403779	CCT	synonymous	NA	NA	NA	NA
M4	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.069	350	509	0	0	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.305214581	3	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	380	613	67	0.109298532	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.610429161	2	1.96E-08	CTG	synonymous	NA	NA	NA	NA
M4	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	109	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.575041963	2	0.992192	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	226	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.897950143	1	0.9996055	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	226	101	22	0.217821782	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	1	0.7430374	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	148	67	11	0.164179104	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.681203557	2	0.9857436	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	73	4	1	0.25	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.526384567	2	0.9318162	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	60	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	1	8.40E-05	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	167	346	42	0.121387283	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.805058749	1	0.8023035	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr6	77641445	12A2p6	cell line	sgMsh2	77641445	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	70	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon5:c.A494C:p.N165T,Ctnna2:NM_009819:exon5:c.A494C:p.N165T,Ctnna2:NM_001109764:exon6:c.A494C:p.N165T,Ctnna2:NM_145732:exon6:c.A494C:p.N165T"	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.676780157	2	0.000833607	ATT	nonsynonymous	T	5	TTTTT	NA
M4	chr6	77845565	12A2p6	cell line	sgMsh2	77845565	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	151	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon2:c.T15A:p.T5T,Ctnna2:NM_009819:exon2:c.T15A:p.T5T,Ctnna2:NM_001109764:exon3:c.T15A:p.T5T,Ctnna2:NM_145732:exon3:c.T15A:p.T5T"	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.79178855	1	0.6882233	AAG	synonymous	NA	NA	NA	NA
M4	chr6	80021802	12A2p6	cell line	sgMsh2	80021802	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	195	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.G196T:p.G66C,Lrrtm4:NM_001282102:exon2:c.G196T:p.G66C,Lrrtm4:NM_001347261:exon2:c.G193T:p.G65C,Lrrtm4:NM_178731:exon2:c.G193T:p.G65C"	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.968724538	1	0.9999866	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	159	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	0.986418137	1	0.999966	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	81944479	12A2p6	cell line	sgMsh2	81944479	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	171	28	3	0.107142857	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon10:c.C1465A:p.P489T	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.176935989	3	3.09E-09	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.127	62	14	3	0.214285714	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	2	0.9335817	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.743131153	2	0.6296528	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	83161721	12A2p6	cell line	sgMsh2	83161721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	113	4	1	0.25	exonic	1700003E16Rik	synonymous SNV	1700003E16Rik:NM_027948:exon4:c.A627G:p.V209V	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9997296	TAC	synonymous	NA	NA	NA	NA
M4	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	102	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9994797	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	83795226	12A2p6	cell line	sgMsh2	83795226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	82	57	16	0.280701754	exonic	Nagk	nonsynonymous SNV	Nagk:NM_001347315:exon1:c.A61G:p.T21A	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.367142177	3	0.9116332	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	85696602	12A2p6	cell line	sgMsh2	85696602	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	294	21	0	0	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon19:c.A9178C:p.S3060R	6qC3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.513114367	2	0.9524223	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	65	66	7	0.106060606	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	0.981994738	1	0.9932899	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	298	427	72	0.168618267	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.645816359	2	0.9999983	CAA	synonymous	NA	NA	NA	NA
M4	chr6	86722595	12A2p6	cell line	sgMsh2	86722595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	65	157	28	0.178343949	exonic	Gmcl1	nonsynonymous SNV	Gmcl1:NM_011818:exon3:c.T449G:p.I150S	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.78294175	1	0.7332714	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	86732983	12A2p6	cell line	sgMsh2	86732983	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	45	44	8	0.181818182	exonic	Gmcl1	nonsynonymous SNV	Gmcl1:NM_011818:exon1:c.A182G:p.H61R	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.526384567	2	0.8528061	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	87646167	12A2p6	cell line	sgMsh2	87646167	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	251	37	7	0.189189189	exonic	Aplf	nonsynonymous SNV	"Aplf:NM_001170489:exon7:c.C992A:p.P331H,Aplf:NM_001372332:exon7:c.C992A:p.P331H,Aplf:NM_024251:exon7:c.C929A:p.P310H"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.774094951	2	0.7383986	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	192	53	8	0.150943396	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.9506175	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M4	chr6	87749190	12A2p6	cell line	sgMsh2	87749190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	70	0	0	NA	exonic	Efcc1	nonsynonymous SNV	Efcc1:NM_001159697:exon3:c.A970G:p.N324D	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.844869346	1	9.32E-07	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	133	99	19	0.191919192	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.9978692	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.126	53	18	2	0.111111111	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.557348365	2	0.8963623	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	41	2	1	0.5	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.548501565	2	0.8137961	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	89322886	12A2p6	cell line	sgMsh2	89322886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	143	247	34	0.137651822	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon28:c.C4900A:p.L1634I	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.676780157	2	0.9857608	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr6	90305116	12A2p6	cell line	sgMsh2	90305116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	129	0	0	NA	exonic	BC048671	nonsynonymous SNV	"BC048671:NM_001358298:exon4:c.A254G:p.Y85C,BC048671:NM_177738:exon5:c.A254G:p.Y85C"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.597158962	2	0.9978019	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	90309104	12A2p6	cell line	sgMsh2	90309104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	126	0	0	NA	exonic	Chst13	nonsynonymous SNV	Chst13:NM_027928:exon3:c.A875G:p.K292R	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9926924	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	278	43	7	0.162790698	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.738707753	2	0.9871329	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	91479573	12A2p6	cell line	sgMsh2	91479573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	170	175	28	0.16	exonic	Tmem43	synonymous SNV	Tmem43:NM_028766:exon5:c.T393C:p.S131S	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.747554552	2	0.8337559	GTG	synonymous	NA	NA	NA	NA
M4	chr6	91504643	12A2p6	cell line	sgMsh2	91504643	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	151	41	9	0.219512195	exonic	Xpc	nonsynonymous SNV	Xpc:NM_009531:exon6:c.T695A:p.I232N	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.884679944	1	0.9940185	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	131	108	12	0.111111111	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.79178855	1	0.707668	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	72	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.513114367	2	0.9073256	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	92458494	12A2p6	cell line	sgMsh2	92458494	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	53	0	0	NA	exonic	Prickle2	frameshift deletion	"Prickle2:NM_001134459:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001134460:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001134461:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001081146:exon3:c.293delC:p.P98Qfs*2"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4	chr6	93785549	12A2p6	cell line	sgMsh2	93785549	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	100	17	0.17	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon4:c.G174T:p.Q58H,Magi1:NM_001083321:exon4:c.G174T:p.Q58H,Magi1:NM_001286788:exon4:c.G174T:p.Q58H,Magi1:NM_001029850:exon5:c.G855T:p.Q285H,Magi1:NM_001286784:exon5:c.G855T:p.Q285H,Magi1:NM_001286785:exon5:c.G855T:p.Q285H,Magi1:NM_001286786:exon5:c.G855T:p.Q285H,Magi1:NM_010367:exon5:c.G855T:p.Q285H"	6qD1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.822752348	1	0.8839387	TCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	187	678	116	0.171091445	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9912136	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	381	64	12	0.1875	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.866986345	1	0.9998079	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	101377670	12A2p6	cell line	sgMsh2	101377670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	44	0	0	NA	exonic	Pdzrn3	synonymous SNV	Pdzrn3:NM_018884:exon1:c.T219C:p.R73R	6qD3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.738707753	1	0.000754806	GAC	synonymous	NA	NA	NA	NA
M4	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	145	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.517537767	2	0.9433999	CTT	synonymous	NA	NA	NA	NA
M4	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	203	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.676780157	2	0.9986953	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	206	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9999046	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	22	2	0.090909091	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.796211949	1	0.7613525	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	115	17	1	0.058823529	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	1	0.5043994	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M4	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	75	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.535231366	2	0.9454786	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr6	111495826	12A2p6	cell line	sgMsh2	111495826	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	167	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.G2625A:p.R875R,Grm7:NM_177328:exon9:c.G2625A:p.R875R"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.959877739	1	0.9999144	GGC	synonymous	NA	NA	NA	NA
M4	chr6	112310674	12A2p6	cell line	sgMsh2	112310674	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	102	0	0	NA	exonic	Lmcd1	nonsynonymous SNV	Lmcd1:NM_144799:exon3:c.C320T:p.T107I	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.8848999	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	215	777	141	0.181467181	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.517537767	2	0.9585162	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	113413024	12A2p6	cell line	sgMsh2	113413024	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	32	4	2	0.5	exonic	Ttll3	nonsynonymous SNV	Ttll3:NM_133923:exon12:c.C2369T:p.A790V	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9674904	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr6	113428126	12A2p6	cell line	sgMsh2	113428126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	126	31	6	0.193548387	exonic	Cidec	synonymous SNV	"Cidec:NM_001301295:exon5:c.C552T:p.I184I,Cidec:NM_001372264:exon5:c.C582T:p.I194I,Cidec:NM_178373:exon5:c.C552T:p.I184I"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.650239759	2	0.9898345	CGA	synonymous	NA	NA	NA	NA
M4	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	73	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.601582362	2	0.9511178	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	342	51	6	0.117647059	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.707743955	2	0.9998695	TTA	synonymous	NA	NA	NA	NA
M4	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	197	59	11	0.186440678	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.9523829	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	252	66	14	0.212121212	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.566195164	2	0.999708	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	130	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.897950143	1	0.9941791	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	139	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.997659	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	115780869	12A2p6	cell line	sgMsh2	115780869	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	86	3	0	0	exonic	Cand2	nonsynonymous SNV	Cand2:NM_025958:exon2:c.A91C:p.M31L	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.734284353	2	0.6063036	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	116406061	12A2p6	cell line	sgMsh2	116406061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	186	148	18	0.121621622	exonic	Marchf8	nonsynonymous SNV	"Marchf8:NM_001302384:exon7:c.T596G:p.V199G,Marchf8:NM_001302385:exon7:c.T479G:p.V160G,Marchf8:NM_027920:exon7:c.T596G:p.V199G,Marchf8:NM_001302383:exon8:c.T596G:p.V199G"	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.844869346	1	0.9752053	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.118	80	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.521961167	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4	chr6	118405011	12A2p6	cell line	sgMsh2	118405011	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	101	119	18	0.151260504	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.A1565C:p.E522A	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.707743955	2	0.8309595	CTC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M4	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	185	38	8	0.210526316	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.906796942	1	0.9992463	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	118508623	12A2p6	cell line	sgMsh2	118508623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	147	17	4	0.235294118	exonic	Ankrd26	nonsynonymous SNV	Ankrd26:NM_001081112:exon30:c.T4289C:p.V1430A	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.659086558	2	0.9944942	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	118511612	12A2p6	cell line	sgMsh2	118511612	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.114	82	29	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon29:c.4085delA:p.N1362Tfs*12	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.504267568	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	72	19	1	0.052631579	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
M4	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	110	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.548501565	2	0.9811785	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M4	chr6	118776550	12A2p6	cell line	sgMsh2	118776550	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	65	0	0	NA	exonic	Cacna1c	frameshift deletion	"Cacna1c:NM_001159533:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001159534:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001159535:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001255997:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001255998:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001255999:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001256000:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001256001:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001256002:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_009781:exon5:c.714delT:p.F238Lfs*4"	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.698897156	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr6	119937777	12A2p6	cell line	sgMsh2	119937777	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	268	463	83	0.179265659	exonic	Wnk1	nonsynonymous SNV	"Wnk1:NM_001185020:exon22:c.A5063T:p.K1688M,Wnk1:NM_001185021:exon22:c.A5264T:p.K1755M,Wnk1:NM_001199083:exon24:c.A6557T:p.K2186M,Wnk1:NM_001199084:exon24:c.A6584T:p.K2195M,Wnk1:NM_198703:exon24:c.A5810T:p.K1937M"	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.992316	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	120481057	12A2p6	cell line	sgMsh2	120481057	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	19	2	0.105263158	exonic	Il17ra	nonsynonymous SNV	Il17ra:NM_008359:exon13:c.C1168A:p.H390N	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.827175747	1	0.8937716	CCA	nonsynonymous	C	5	CCCCC	NA
M4	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	91	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.712167355	2	0.7619389	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	121262660	12A2p6	cell line	sgMsh2	121262660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	236	10	1	0.1	exonic	Usp18	nonsynonymous SNV	Usp18:NM_011909:exon8:c.T713C:p.V238A	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.796211949	1	0.6729007	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	34	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.805058749	1	0.8128132	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M4	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.1102	127	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.487458649	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M4	chr6	121641346	12A2p6	cell line	sgMsh2	121641346	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	174	0	0	NA	exonic	A2m	synonymous SNV	A2m:NM_175628:exon6:c.C597T:p.P199P	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.9979534	CCC	synonymous	C	5	CCCCC	NA
M4	chr6	121880873	12A2p6	cell line	sgMsh2	121880873	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	138	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon27:c.C3324A:p.T1108T	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.703320555	2	0.9483057	CCA	synonymous	NA	NA	NA	NA
M4	chr6	122316328	12A2p6	cell line	sgMsh2	122316328	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.216	163	169	31	0.183431953	exonic	M6pr	nonsynonymous SNV	M6pr:NM_010749:exon7:c.G715T:p.D239Y	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.955454339	1	0.999871	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	183	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.849292746	1	0.9798891	AAT	synonymous	NA	NA	NA	NA
M4	chr6	122464187	12A2p6	cell line	sgMsh2	122464187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	0	0	NA	exonic	Rimklb	nonsynonymous SNV	Rimklb:NM_027664:exon3:c.T197C:p.L66P	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.998999	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	122562426	12A2p6	cell line	sgMsh2	122562426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	359	0	0	NA	exonic	Aicda	nonsynonymous SNV	Aicda:NM_009645:exon5:c.T550C:p.Y184H	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.579465363	2	0.9999965	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	109	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.7491254	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr6	123315652	12A2p6	cell line	sgMsh2	123315652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	453	0	0	NA	exonic	Vmn2r19	synonymous SNV	Vmn2r19:NM_001104632:exon3:c.C652T:p.L218L	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	1.02E-08	CCT	synonymous	NA	NA	NA	NA
M4	chr6	123336368	12A2p6	cell line	sgMsh2	123336368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	465	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.T2396C:p.I799T	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.721014154	2	0.9999795	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	458	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.756401352	2	0.9963792	CTG	synonymous	NA	NA	NA	NA
M4	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	424	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.734284353	2	0.9996575	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	123787388	12A2p6	cell line	sgMsh2	123787388	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	353	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon3:c.C1223A:p.A408D	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.809482149	1	0.8562155	GCT	nonsynonymous	TGC	8	TGCTGCTG	NA
M4	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	562	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.707743955	2	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	83	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.8973986	GAT	synonymous	NA	NA	NA	NA
M4	chr6	124493160	12A2p6	cell line	sgMsh2	124493160	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	63	0	0	NA	exonic	C1rl	nonsynonymous SNV	C1rl:NM_181344:exon1:c.T10G:p.F4V	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.964301139	1	0.9895021	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	77	57	4	0.070175439	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9976995	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr6	124766255	12A2p6	cell line	sgMsh2	124766255	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	120	0	0	NA	exonic	Eno2	nonsynonymous SNV	"Eno2:NM_001355220:exon7:c.G517A:p.V173M,Eno2:NM_013509:exon7:c.G517A:p.V173M"	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.698897156	2	0.9240808	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	104	1	0	0	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.862562945	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4	chr6	124914408	12A2p6	cell line	sgMsh2	124914408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	48	2176	11	0.005055147	exonic	Ptms	synonymous SNV	Ptms:NM_026988:exon4:c.G255A:p.E85E	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.95103094	1	0.9739604	CCT	synonymous	NA	NA	NA	NA
M4	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	194	210	40	0.19047619	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.964301139	1	0.9999816	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	73	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.694473756	2	0.7379739	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M4	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	260	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.557348365	2	0.9994034	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	117	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.716590754	2	0.8534336	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	161	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.486573969	2	0.7163143	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	126738607	12A2p6	cell line	sgMsh2	126738607	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	177	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T1318A:p.S440T	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.62812276	2	0.9997162	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	126739613	12A2p6	cell line	sgMsh2	126739613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	118	0	0	NA	exonic	Kcna6	synonymous SNV	Kcna6:NM_013568:exon1:c.T312C:p.G104G	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.871409745	1	0.9789281	GAC	synonymous	NA	NA	NA	NA
M4	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	121	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.884679944	1	0.9877867	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	128366066	12A2p6	cell line	sgMsh2	128366066	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	75	70	14	0.2	exonic	Foxm1	nonsynonymous SNV	Foxm1:NM_008021:exon2:c.C362A:p.P121H	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.641392959	2	0.9097587	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	51	1004	152	0.151394422	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9892762	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	100	1419	272	0.191684285	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.597158962	2	0.9899293	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	129429902	12A2p6	cell line	sgMsh2	129429902	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	169	0	0	NA	exonic	Clec1a	nonsynonymous SNV	Clec1a:NM_175526:exon5:c.T649A:p.S217T	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.482150569	2	0.6391902	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	232	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.482150569	3	0.5029478	GAC	synonymous	NA	NA	NA	NA
M4	chr6	131376073	12A2p6	cell line	sgMsh2	131376073	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	117	23	0.196581197	exonic	Ybx3	nonsynonymous SNV	Ybx3:NM_139117:exon6:c.G657C:p.Q219H	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9898897	ACT	nonsynonymous	G	5	GGGGG	NA
M4	chr6	131630478	12A2p6	cell line	sgMsh2	131630478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	161	0	0	NA	exonic	Tas2r130	nonsynonymous SNV	Tas2r130:NM_199156:exon1:c.T353G:p.L118R	6qF3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.765248151	2	6.42E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	132572232	12A2p6	cell line	sgMsh2	132572232	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.231	48	0	0	NA	exonic	Prh1	nonsynonymous SNV	Prh1:NM_011174:exon2:c.C701T:p.P234L	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.987206	CCA	nonsynonymous	CCA	12	CCACCACCACCA	NA
M4	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	126	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.526384567	2	0.9593714	CCC	synonymous	NA	NA	NA	NA
M4	chr6	132755481	12A2p6	cell line	sgMsh2	132755481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	153	0	0	NA	exonic	Tas2r124	nonsynonymous SNV	Tas2r124:NM_207026:exon1:c.T752C:p.V251A	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.800635349	1	0.7684536	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	132777455	12A2p6	cell line	sgMsh2	132777455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	188	0	0	NA	exonic	Tas2r136	nonsynonymous SNV	Tas2r136:NM_181276:exon1:c.G708T:p.Q236H	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.849292746	1	0.9811404	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	152	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9999735	GTG	synonymous	NA	NA	NA	NA
M4	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	73	35	8	0.228571429	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.822752348	1	0.8638902	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	86	80	7	0.0875	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.831599147	1	0.8953346	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	81	81	7	0.086419753	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.840445947	1	0.9112451	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	188	121	24	0.198347107	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.809482149	1	0.8383403	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	101	13	0.128712871	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.769671551	2	0.6304477	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	133	24	4	0.166666667	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.597158962	2	0.9981956	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	125	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	0.995264937	1	0.9998412	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	136401316	12A2p6	cell line	sgMsh2	136401316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	300	0	0	NA	exonic	E330021D16Rik	nonsynonymous SNV	E330021D16Rik:NM_001201390:exon2:c.T515C:p.L172P	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.654663158	2	0.9999965	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	119	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.94218414	1	0.9984268	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.168	153	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.743131153	2	0.819194	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M4	chr6	137514729	12A2p6	cell line	sgMsh2	137514729	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.205	41	311	69	0.221864952	exonic	Eps8	nonsynonymous SNV	"Eps8:NM_001271589:exon4:c.A220C:p.K74Q,Eps8:NM_001271587:exon11:c.A1078C:p.K360Q,Eps8:NM_001271588:exon11:c.A1000C:p.K334Q,Eps8:NM_001271595:exon11:c.A1000C:p.K334Q,Eps8:NM_007945:exon12:c.A1000C:p.K334Q"	6qG1	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.906796942	1	0.9400122	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	154	35	1	0.028571429	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.743131153	2	0.8220794	ATT	synonymous	NA	NA	NA	NA
M4	chr6	140543950	12A2p6	cell line	sgMsh2	140543950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	141	70	14	0.2	exonic	Plekha5	nonsynonymous SNV	Plekha5:NM_144920:exon11:c.A1079G:p.Y360C	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.889103343	1	0.9937269	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	147	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.561771764	2	0.9953564	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	215	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.827175747	1	0.9448264	AAA	synonymous	NA	NA	NA	NA
M4	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	379	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.77851835	2	0.8592848	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr6	142360906	12A2p6	cell line	sgMsh2	142360906	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	35	10	0.285714286	exonic	Pyroxd1	nonsynonymous SNV	Pyroxd1:NM_183165:exon11:c.G1158T:p.K386N	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.853716146	1	0.9847001	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	260	45	7	0.155555556	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.663509958	2	0.999954	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	90	54	7	0.12962963	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.636969559	2	0.9605173	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	142463365	12A2p6	cell line	sgMsh2	142463365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	266	0	0	NA	exonic	Gys2	nonsynonymous SNV	Gys2:NM_145572:exon2:c.A163G:p.T55A	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.729860954	2	0.9919461	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr6	142620745	12A2p6	cell line	sgMsh2	142620745	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	72	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon29:c.G3456T:p.Q1152H,Abcc9:NM_001310143:exon29:c.G3456T:p.Q1152H,Abcc9:NM_021042:exon29:c.G3390T:p.Q1130H,Abcc9:NM_011511:exon30:c.G3495T:p.Q1165H,Abcc9:NM_021041:exon30:c.G3495T:p.Q1165H"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.552924965	2	0.9552742	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	250	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.588312163	2	0.999965	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	214	33	1	0.03030303	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M4	chr6	143835296	12A2p6	cell line	sgMsh2	143835296	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	112	0	0	NA	exonic	Sox5	stopgain	"Sox5:NM_001347506:exon7:c.A775T:p.K259X,Sox5:NM_001113559:exon13:c.A1744T:p.K582X,Sox5:NM_001243163:exon13:c.A1636T:p.K546X,Sox5:NM_011444:exon14:c.A1888T:p.K630X"	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	2	1	1	0.9997131	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr6	145039468	12A2p6	cell line	sgMsh2	145039468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	153	13	0	0	exonic	Bcat1	synonymous SNV	"Bcat1:NM_001024468:exon3:c.T447C:p.H149H,Bcat1:NM_007532:exon3:c.T246C:p.H82H"	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.871409745	1	0.9893932	GAT	synonymous	NA	NA	NA	NA
M4	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	68	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.667933358	2	0.8043387	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr6	146563521	12A2p6	cell line	sgMsh2	146563521	A	-	Deletion	Strelka2;Vardict	2	0.1438	153	4	0	0	exonic	Ints13	stopgain	Ints13:NM_001362107:exon6:c.593delT:p.L198fs*0	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.63608488	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M4	chr6	147101622	12A2p6	cell line	sgMsh2	147101623	CT	TC	DBS	Mutect2;Vardict	2	0.148	136	31	6	0.193548387	exonic	Klhl42	nonframeshift substitution	Klhl42:NM_001081237:exon2:c.893_894TC:p.A298V	6qG3	chr6-3373003-148425959	6	4	2	0.99	4.379165722	NA	1	0.654663158	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	266	13	1	0.076923077	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	227	72	6	0.083333333	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	3616061	12A2p6	cell line	sgMsh2	3616061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	44	0	0	NA	exonic	Oscar	nonsynonymous SNV	"Oscar:NM_001290377:exon1:c.T17C:p.I6T,Oscar:NM_175632:exon1:c.T17C:p.I6T"	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.379165722	NA	1	1	1	0.9838216	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	104	107	25	0.23364486	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CGA	nonsynonymous	NA	NA	NA	NA
M4	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	59	33	8	0.242424242	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9921105	CAG	synonymous	NA	NA	NA	NA
M4	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	81	1	0	0	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8684591	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	298	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	5.46E-09	CCT	synonymous	NA	NA	NA	NA
M4	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	151	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.805058749	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4	chr7	4470855	12A2p6	cell line	sgMsh2	4470855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	41	3	1	0.333333333	exonic	Eps8l1	synonymous SNV	"Eps8l1:NM_001290416:exon7:c.C477T:p.R159R,Eps8l1:NM_001374622:exon7:c.C660T:p.R220R,Eps8l1:NM_026146:exon7:c.C477T:p.R159R"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	GCT	synonymous	NA	NA	NA	NA
M4	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.334	25	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9514674	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M4	chr7	4541081	12A2p6	cell line	sgMsh2	4541081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	47	4	1	0.25	exonic	Syt5	nonsynonymous SNV	"Syt5:NM_001360421:exon8:c.A959G:p.Q320R,Syt5:NM_001360422:exon8:c.A959G:p.Q320R"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9864319	CTG	nonsynonymous	CACCTG	12	CACCTGCACCTG	NA
M4	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	121	1	0	0	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998321	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	19	3	0	0	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9319201	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	56	33	7	0.212121212	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.992015	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	208	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	0.6926078	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	132	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9998942	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	412	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.01E-09	AGC	synonymous	NA	NA	NA	NA
M4	chr7	6460824	12A2p6	cell line	sgMsh2	6460824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	189	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T314C:p.L105P	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999971	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	202	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999986	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr7	6514620	12A2p6	cell line	sgMsh2	6514620	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	60	0	0	NA	exonic	Olfr1349	nonsynonymous SNV	Olfr1349:NM_207136:exon1:c.C808T:p.R270C	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	CGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	6515134	12A2p6	cell line	sgMsh2	6515134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	38	0	0	NA	exonic	Olfr1349	synonymous SNV	Olfr1349:NM_207136:exon1:c.A294G:p.G98G	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9770344	GTC	synonymous	NA	NA	NA	NA
M4	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	136	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999161	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	176	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.999764	CCC	synonymous	NA	NA	NA	NA
M4	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	151	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999718	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	10053061	12A2p6	cell line	sgMsh2	10053061	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	106	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon1:c.G118A:p.G40R	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9995899	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr7	10169124	12A2p6	cell line	sgMsh2	10169124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	174	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.T1376C:p.I459T	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999928	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	3	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9990957	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr7	11756416	12A2p6	cell line	sgMsh2	11756416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	136	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A160G:p.N54D	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999312	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	149	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999683	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M4	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	65	397	99	0.249370277	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.8695668	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	66	3	0	0	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	14236620	12A2p6	cell line	sgMsh2	14236620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	264	0	0	NA	exonic	Sult2a6	nonsynonymous SNV	Sult2a6:NM_001081325:exon4:c.T550C:p.Y184H	7qA1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	27	396	108	0.272727273	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9566913	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	15988394	12A2p6	cell line	sgMsh2	15988394	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	60	16	6	0.375	exonic	Bicra	synonymous SNV	Bicra:NM_001081418:exon5:c.T1197G:p.T399T	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	AAG	synonymous	NA	NA	NA	NA
M4	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	197	89	20	0.224719101	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999982	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr7	16833031	12A2p6	cell line	sgMsh2	16833031	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	83	69	13	0.188405797	exonic	Strn4	nonsynonymous SNV	"Strn4:NM_001039878:exon10:c.G1354A:p.A452T,Strn4:NM_133789:exon10:c.G1375A:p.A459T"	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	16886406	12A2p6	cell line	sgMsh2	16886406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	36	0	0	NA	exonic	Dact3	nonsynonymous SNV	Dact3:NM_001081655:exon4:c.A1825G:p.T609A	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.913093	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	16908970	12A2p6	cell line	sgMsh2	16908970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	51	0	0	NA	exonic	Ptgir	synonymous SNV	Ptgir:NM_008967:exon2:c.T1104C:p.A368A	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9892762	CTA	synonymous	AAGG	8	AAGGAAGG	NA
M4	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	238	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	ACA	synonymous	NA	NA	NA	NA
M4	chr7	18262513	12A2p6	cell line	sgMsh2	18262513	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	90	0	0	NA	exonic	Mill1	nonsynonymous SNV	Mill1:NM_153749:exon3:c.A253G:p.R85G	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	18684588	12A2p6	cell line	sgMsh2	18684588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	362	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon2:c.T253C:p.Y85H	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.10E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	68	118	29	0.245762712	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9843271	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	19176635	12A2p6	cell line	sgMsh2	19176635	-	G	Insertion	Strelka2;Vardict	2	0.3333	21	0	0	NA	exonic	Eml2	frameshift insertion	Eml2:NM_001347582:exon1:c.23dupG:p.D11Gfs*40	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	CTG	frameshift	G	9	GGGGGGGGG	1
M4	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	16	7	2	0.285714286	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9108706	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	208	42	0.201923077	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.221	148	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9999064	CAG	synonymous	NA	NA	NA	NA
M4	chr7	23418347	12A2p6	cell line	sgMsh2	23418347	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	70	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001039143:exon7:c.C1447T:p.L483L,Nlrp5:NM_001305857:exon7:c.C1495T:p.L499L,Nlrp5:NM_011860:exon8:c.C1495T:p.L499L"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9965144	CCT	synonymous	NA	NA	NA	NA
M4	chr7	24126040	12A2p6	cell line	sgMsh2	24126040	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.238	93	3	0	0	exonic	Zfp112	nonsynonymous SNV	Zfp112:NM_021307:exon5:c.A1444G:p.S482G	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	24570538	12A2p6	cell line	sgMsh2	24570538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	55	80	13	0.1625	exonic	Xrcc1	synonymous SNV	"Xrcc1:NM_001360169:exon11:c.A1098G:p.P366P,Xrcc1:NM_001360168:exon13:c.A1380G:p.P460P,Xrcc1:NM_009532:exon13:c.A1383G:p.P461P"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	CAG	synonymous	NA	NA	NA	NA
M4	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	84	1	0	0	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9984823	CGC	synonymous	C	5	CCCCC	NA
M4	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	54	41	12	0.292682927	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.769671551	1	0.7049348	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	27	4	0.148148148	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.769671551	1	0.6630718	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	36	97	25	0.257731959	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9621459	AGG	synonymous	NA	NA	NA	NA
M4	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	30	56	10	0.178571429	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.09897485	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M4	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	181	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999953	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	26462565	12A2p6	cell line	sgMsh2	26462565	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	202	0	0	NA	exonic	Nlrp4a	synonymous SNV	"Nlrp4a:NM_001362156:exon9:c.G2637A:p.L879L,Nlrp4a:NM_172896:exon9:c.G2637A:p.L879L"	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999986	TGC	synonymous	NA	NA	NA	NA
M4	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	165	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.853716146	1	0.9796713	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	72	2	0	0	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9917282	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M4	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	24	10	1	0.1	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9486338	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	28107439	12A2p6	cell line	sgMsh2	28107439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	69	3	1	0.333333333	exonic	Fcgbp	synonymous SNV	Fcgbp:NM_001122603:exon16:c.A6831G:p.A2277A	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.521961167	2	0.009576849	CAG	synonymous	NA	NA	NA	NA
M4	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	105	150	38	0.253333333	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995648	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	44	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9838216	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	29	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9613722	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	28814227	12A2p6	cell line	sgMsh2	28814227	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	203	1139	243	0.21334504	exonic	Hnrnpl	nonsynonymous SNV	Hnrnpl:NM_177301:exon4:c.C641A:p.P214H	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9995671	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	28894591	12A2p6	cell line	sgMsh2	28894591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	71	573	150	0.261780105	exonic	Actn4	nonsynonymous SNV	"Actn4:NM_001360548:exon20:c.A2490C:p.Q830H,Actn4:NM_001360549:exon20:c.A2475C:p.Q825H,Actn4:NM_021895:exon20:c.A2490C:p.Q830H,Actn4:NM_001360550:exon21:c.A1701C:p.Q567H"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9795677	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	95	644	170	0.263975155	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.87614	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	122	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	23	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.945642	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M4	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	25	1	0	0	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9514674	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	80	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9942516	CTG	synonymous	NA	NA	NA	NA
M4	chr7	30715068	12A2p6	cell line	sgMsh2	30715068	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	88	0	0	NA	exonic	Atp4a	nonsynonymous SNV	"Atp4a:NM_001290627:exon5:c.A515C:p.K172T,Atp4a:NM_018731:exon5:c.A515C:p.K172T"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988035	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	71	490	66	0.134693878	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	227	58	1	0.017241379	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999992	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	210	69	2	0.028985507	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.135	57	70	17	0.242857143	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.597158962	2	0.09909164	CAT	synonymous	NA	NA	NA	NA
M4	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	70	20	3	0.15	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9824886	GCT	synonymous	NA	NA	NA	NA
M4	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	37	50	8	0.16	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.914985	ATA	synonymous	NA	NA	NA	NA
M4	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	117	6	2	0.333333333	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997869	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M4	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	112	50	16	0.32	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997131	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	89	23	3	0.130434783	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9988726	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	41648224	12A2p6	cell line	sgMsh2	41648224	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	183	28	3	0.107142857	exonic	Zfp788	nonsynonymous SNV	"Zfp788:NM_001360678:exon4:c.A223G:p.T75A,Zfp788:NM_001360681:exon4:c.A127G:p.T43A,Zfp788:NM_001360674:exon5:c.A283G:p.T95A,Zfp788:NM_001360677:exon5:c.A238G:p.T80A,Zfp788:NM_001360680:exon5:c.A127G:p.T43A,Zfp788:NM_001360683:exon5:c.A127G:p.T43A,Zfp788:NM_001360684:exon5:c.A127G:p.T43A,Zfp788:NM_001360675:exon6:c.A283G:p.T95A,Zfp788:NM_023363:exon6:c.A127G:p.T43A"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999958	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	42046819	12A2p6	cell line	sgMsh2	42046819	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	132	0	0	NA	exonic	Vmn2r59	synonymous SNV	Vmn2r59:NM_001105056:exon2:c.T498G:p.P166P	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999127	GAG	synonymous	NA	NA	NA	NA
M4	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	386	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.02E-09	TAC	synonymous	NA	NA	NA	NA
M4	chr7	42195170	12A2p6	cell line	sgMsh2	42195170	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	372	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon6:c.C1956T:p.T652T	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.05E-09	CCT	synonymous	NA	NA	NA	NA
M4	chr7	43467545	12A2p6	cell line	sgMsh2	43467545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	41	0	0	NA	exonic	Vsig10l	synonymous SNV	"Vsig10l:NM_001290316:exon6:c.A1503G:p.Q501Q,Vsig10l:NM_001368881:exon6:c.A1809G:p.Q603Q"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9807187	AAG	synonymous	NA	NA	NA	NA
M4	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	53	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	100	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9882716	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	43847495	12A2p6	cell line	sgMsh2	43847495	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	80	0	0	NA	exonic	Klk5	nonsynonymous SNV	Klk5:NM_026806:exon4:c.G650T:p.R217M	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9767019	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	44253406	12A2p6	cell line	sgMsh2	44253406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	53	0	0	NA	exonic	Acp4	nonsynonymous SNV	Acp4:NM_001195034:exon10:c.T1037C:p.L346P	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8223845	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	59	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.8909602	CAG	synonymous	NA	NA	NA	NA
M4	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	59	56	23	0.410714286	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	32	77	23	0.298701299	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9659893	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	44841353	12A2p6	cell line	sgMsh2	44841353	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	52	31	8	0.258064516	exonic	Tbc1d17	nonsynonymous SNV	Tbc1d17:NM_001042655:exon17:c.C1814A:p.P605H	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	169	79	21	0.265822785	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999904	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	44943425	12A2p6	cell line	sgMsh2	44943425	A	-	Deletion	Strelka2;Vardict	2	0.2903	31	0	0	NA	exonic	Tsks	frameshift deletion	"Tsks:NM_001077591:exon1:c.142delA:p.K50Rfs*21,Tsks:NM_011651:exon1:c.142delA:p.K50Rfs*21"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4	chr7	45000839	12A2p6	cell line	sgMsh2	45000853	GGGCTGGGCAATGGG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	66	72	4	0.055555556	exonic	Irf3	nonframeshift deletion	Irf3:NM_016849:exon6:c.778_792del:p.G260_G264del	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	inframe	NA	NA	NA	-15
M4	chr7	45043449	12A2p6	cell line	sgMsh2	45043449	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	71	32	7	0.21875	exonic	Prr12	nonsynonymous SNV	Prr12:NM_175022:exon6:c.G4658A:p.G1553E	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	30	29	4	0.137931034	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.8810452	AAG	synonymous	NA	NA	NA	NA
M4	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	65	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	CAT	synonymous	NA	NA	NA	NA
M4	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	153	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.999975	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	152	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.818328948	1	0.8839147	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	34	13	4	0.307692308	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.971036	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	103	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	CCT	synonymous	CTG	8	CTGCTGCT	NA
M4	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	113	115	30	0.260869565	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.339	61	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9940585	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.339	61	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9940585	ATA	synonymous	NA	NA	NA	NA
M4	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	48	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.659086558	2	0.6642829	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	91	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9972816	GTG	synonymous	GT	8	GTGTGTGT	NA
M4	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	129	116	21	0.181034483	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998957	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	86	81	4	0.049382716	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	AAG	synonymous	NA	NA	NA	NA
M4	chr7	56230919	12A2p6	cell line	sgMsh2	56230919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	207	62	22	0.35483871	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon93:c.T14298C:p.F4766F,Herc2:NM_010418:exon93:c.T14298C:p.F4766F"	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.999999	TTC	synonymous	TTCT	8	TTCTTTCT	NA
M4	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	160	89	19	0.213483146	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9994525	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	68	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	8.99E-06	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	12	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4	chr7	63099665	12A2p6	cell line	sgMsh2	63099665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	59	0	0	NA	exonic	Chrna7	synonymous SNV	Chrna7:NM_007390:exon10:c.T1068C:p.A356A	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	AAG	synonymous	GCCG	8	GCCGGCCG	NA
M4	chr7	64248315	12A2p6	cell line	sgMsh2	64248315	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	40	0	0	NA	exonic	Trpm1	nonsynonymous SNV	Trpm1:NM_001039104:exon26:c.A3695C:p.E1232A	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.97956	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	280	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.40E-08	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	123	135	29	0.214814815	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998509	CAG	synonymous	AGA	8	AGAAGAAG	NA
M4	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	102	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9174246	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	80238957	12A2p6	cell line	sgMsh2	80238957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	87	16	0	0	exonic	Gdpgp1	nonsynonymous SNV	Gdpgp1:NM_178752:exon2:c.A735G:p.I245M	7qD2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	48	53	17	0.320754717	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9770805	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	717	185	0.258019526	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9891092	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	80876035	12A2p6	cell line	sgMsh2	80876035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	45	17	1	0.058823529	exonic	Zscan2	synonymous SNV	"Zscan2:NM_001382511:exon3:c.C1503A:p.P501P,Zscan2:NM_001382512:exon3:c.C1503A:p.P501P,Zscan2:NM_001382513:exon3:c.C1500A:p.P500P,Zscan2:NM_001382514:exon3:c.C1503A:p.P501P,Zscan2:NM_001382515:exon3:c.C1503A:p.P501P,Zscan2:NM_009553:exon3:c.C1503A:p.P501P"	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9847424	CCT	synonymous	NA	NA	NA	NA
M4	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	21	22	5	0.227272727	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9391504	CAT	synonymous	NA	NA	NA	NA
M4	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	68	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	136	1	0	0	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.889103343	1	0.9928846	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	120	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.676780157	2	0.9649711	GAG	synonymous	NA	NA	NA	NA
M4	chr7	84856666	12A2p6	cell line	sgMsh2	84856666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	299	0	0	NA	exonic	Olfr291	nonsynonymous SNV	Olfr291:NM_146415:exon3:c.T302C:p.L101S	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	5.20E-09	TTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	150	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9959214	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	85234520	12A2p6	cell line	sgMsh2	85234520	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	194	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon2:c.T376G:p.Y126D	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999978	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	85623945	12A2p6	cell line	sgMsh2	85623945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	259	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon6:c.T1954C:p.F652L	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	4.64E-08	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr7	86165071	12A2p6	cell line	sgMsh2	86165071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	228	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.T1213C:p.S405P	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.979253	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	129	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9993877	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	213	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.734284353	2	0.9633008	CTG	synonymous	NA	NA	NA	NA
M4	chr7	86616391	12A2p6	cell line	sgMsh2	86616391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	192	0	0	NA	exonic	Olfr294	nonsynonymous SNV	Olfr294:NM_001011750:exon1:c.A253G:p.T85A	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999975	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.365	159	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M4	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	237	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr7	86920249	12A2p6	cell line	sgMsh2	86920249	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	163	0	0	NA	exonic	Vmn2r78	frameshift deletion	Vmn2r78:NM_001105189:exon2:c.349delA:p.K119Rfs*15	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4	chr7	87002361	12A2p6	cell line	sgMsh2	87002361	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	284	0	0	NA	exonic	Vmn2r79	nonsynonymous SNV	Vmn2r79:NM_001105190:exon3:c.A967G:p.M323V	7qD3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.13E-08	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	90382793	12A2p6	cell line	sgMsh2	90382793	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	123	83	23	0.277108434	exonic	Sytl2	nonsynonymous SNV	Sytl2:NM_001368878:exon8:c.C4679T:p.T1560I	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9984257	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	105	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.831599147	1	0.09180322	TAA	synonymous	A	5	AAAAA	NA
M4	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	103	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.9676861	ATT	nonsynonymous	A	5	AAAAA	NA
M4	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	159	16	2	0.125	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999825	TCG	nonsynonymous	NA	NA	NA	NA
M4	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	71	31	23	0.741935484	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	35	29	0.828571429	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9843076	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	98710164	12A2p6	cell line	sgMsh2	98710164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	200	167	39	0.233532934	exonic	Thap12	synonymous SNV	Thap12:NM_028410:exon3:c.A249G:p.P83P	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999985	CAA	synonymous	NA	NA	NA	NA
M4	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	42	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.9579551	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	59	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.858139545	1	0.9185054	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	100259961	12A2p6	cell line	sgMsh2	100259961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	153	11	3	0.272727273	exonic	Pgm2l1	synonymous SNV	Pgm2l1:NM_027629:exon6:c.A633G:p.E211E	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.9462212	AAC	synonymous	NA	NA	NA	NA
M4	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	82	38	14	0.368421053	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	CAG	synonymous	CAG	8	CAGCAGCA	NA
M4	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	55	5	0	0	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	102000334	12A2p6	cell line	sgMsh2	102000334	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	47	138	1	0.007246377	exonic	Numa1	frameshift deletion	Numa1:NM_133947:exon14:c.3271delG:p.G1092Vfs*36	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.650239759	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4	chr7	102001125	12A2p6	cell line	sgMsh2	102001125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	23	43	10	0.23255814	exonic	Numa1	synonymous SNV	Numa1:NM_133947:exon14:c.T4062C:p.S1354S	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.945642	GTG	synonymous	NA	NA	NA	NA
M4	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	75	156	39	0.25	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9974094	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	128	230	52	0.226086957	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998893	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	84	281	63	0.224199288	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	GTT	synonymous	NA	NA	NA	NA
M4	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	113	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	138	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	169	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999904	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	398	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.880256544	1	0.9999725	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	92	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9957307	GTA	synonymous	NA	NA	NA	NA
M4	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	ATG	synonymous	NA	NA	NA	NA
M4	chr7	103732555	12A2p6	cell line	sgMsh2	103732555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	450	0	0	NA	exonic	Olfr628	nonsynonymous SNV	Olfr628:NM_147097:exon1:c.C628T:p.L210F	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.544078165	2	0.9998685	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr7	103947175	12A2p6	cell line	sgMsh2	103947175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	194	0	0	NA	exonic	Olfr633	nonsynonymous SNV	Olfr633:NM_146354:exon1:c.T608C:p.V203A	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999978	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	104068260	12A2p6	cell line	sgMsh2	104068260	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	158	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.A770C:p.K257T	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	CTT	nonsynonymous	ACCT	8	ACCTACCT	NA
M4	chr7	104141731	12A2p6	cell line	sgMsh2	104141731	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	156	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.C1220A:p.P407H,Ubqln3:NM_198623:exon2:c.C1151A:p.P384H"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	328	9	1	0.111111111	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	144	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	209	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9999133	TCC	synonymous	NA	NA	NA	NA
M4	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	388	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.02E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	104841298	12A2p6	cell line	sgMsh2	104841298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	373	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.A418G:p.T140A,Usp17lb:NM_201409:exon2:c.A421G:p.T141A"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.05E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	104881101	12A2p6	cell line	sgMsh2	104881101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	245	0	0	NA	exonic	Olfr665	synonymous SNV	Olfr665:NM_146814:exon1:c.A393G:p.P131P	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.933337341	1	0.999984	CAT	synonymous	NA	NA	NA	NA
M4	chr7	104916819	12A2p6	cell line	sgMsh2	104916819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	157	0	0	NA	exonic	Olfr667	nonsynonymous SNV	Olfr667:NM_147060:exon1:c.T476C:p.L159P	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999803	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M4	chr7	104939220	12A2p6	cell line	sgMsh2	104939220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	210	0	0	NA	exonic	Olfr669	synonymous SNV	Olfr669:NM_147043:exon1:c.C693T:p.S231S	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999992	CCT	synonymous	NA	NA	NA	NA
M4	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	74	64	13	0.203125	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.997251	GAT	synonymous	NA	NA	NA	NA
M4	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	72	34	1	0.029411765	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr7	106689451	12A2p6	cell line	sgMsh2	106689451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	362	0	0	NA	exonic	Olfr694	synonymous SNV	Olfr694:NM_146452:exon1:c.A279G:p.S93S	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	1.10E-09	ATG	synonymous	NA	NA	NA	NA
M4	chr7	106790922	12A2p6	cell line	sgMsh2	106790922	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	120	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.G78A:p.L26L	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9477067	GCA	synonymous	NA	NA	NA	NA
M4	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	203	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999977	CCT	synonymous	NA	NA	NA	NA
M4	chr7	106845189	12A2p6	cell line	sgMsh2	106845189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	243	0	0	NA	exonic	Olfr703	nonsynonymous SNV	Olfr703:NM_146596:exon1:c.T577C:p.S193P	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr7	106845245	12A2p6	cell line	sgMsh2	106845245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	235	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.T633C:p.L211L	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9998385	TTG	synonymous	NA	NA	NA	NA
M4	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	169	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999904	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	228	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	312	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	2.94E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M4	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	261	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999998	AAA	synonymous	AATG	8	AATGAATG	NA
M4	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	208	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999991	ATG	nonsynonymous	G	5	GGGGG	NA
M4	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	143	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999547	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	108124824	12A2p6	cell line	sgMsh2	108124824	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	214	0	0	NA	exonic	Olfr484	synonymous SNV	Olfr484:NM_146499:exon1:c.G438A:p.Q146Q	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9760865	ACT	synonymous	CAAC	8	CAACCAAC	NA
M4	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	197	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999982	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	108287124	12A2p6	cell line	sgMsh2	108287124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	181	0	0	NA	exonic	Olfr490	nonsynonymous SNV	Olfr490:NM_146498:exon1:c.A1G:p.M1V	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999871	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	310	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	3.18E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	108368425	12A2p6	cell line	sgMsh2	108368425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	219	0	0	NA	exonic	Olfr494	nonsynonymous SNV	Olfr494:NM_146737:exon1:c.A934G:p.M312V	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999995	AAT	nonsynonymous	GAAA	8	GAAAGAAA	NA
M4	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.226	329	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	1.73E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	108825371	12A2p6	cell line	sgMsh2	108825371	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	230	0	0	NA	exonic	Olfr514	frameshift deletion	Olfr514:NM_146726:exon1:c.627delC:p.F210Sfs*2	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M4	chr7	108924890	12A2p6	cell line	sgMsh2	108924890	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	81	0	0	NA	exonic	Nlrp10	nonsynonymous SNV	Nlrp10:NM_175532:exon3:c.T1382A:p.M461K	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	109336109	12A2p6	cell line	sgMsh2	109336109	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	168	0	0	NA	exonic	Stk33	nonsynonymous SNV	"Stk33:NM_001355145:exon3:c.G106A:p.V36M,Stk33:NM_054103:exon6:c.G475A:p.V159M"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9875863	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr7	110047063	12A2p6	cell line	sgMsh2	110047063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	142	467	98	0.209850107	exonic	Ipo7	synonymous SNV	"Ipo7:NM_001362172:exon15:c.T1668C:p.D556D,Ipo7:NM_181517:exon15:c.T1668C:p.D556D"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9999282	ATG	synonymous	ATG	8	ATGATGAT	NA
M4	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	65	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	106	11	0	0	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	0.7878057	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr7	112381939	12A2p6	cell line	sgMsh2	112381939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	94	2	0	0	exonic	Micalcl	synonymous SNV	"Micalcl:NM_001381862:exon4:c.A1119G:p.T373T,Micalcl:NM_027587:exon4:c.A1119G:p.T373T"	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991626	CAC	synonymous	NA	NA	NA	NA
M4	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	220	853	186	0.218053927	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	160	273	47	0.172161172	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.99996	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	118184633	12A2p6	cell line	sgMsh2	118184633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	15	60	14	0.233333333	exonic	Smg1	nonsynonymous SNV	Smg1:NM_001031814:exon22:c.T3029C:p.I1010T	7qF1	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9149015	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	121	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	0.8465811	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	168	31	9	0.290322581	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999898	AAC	synonymous	NA	NA	NA	NA
M4	chr7	119951765	12A2p6	cell line	sgMsh2	119951765	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	0	0	NA	exonic	Dnah3	synonymous SNV	Dnah3:NM_001370806:exon52:c.G9297A:p.L3099L	7qF2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	TCA	synonymous	NA	NA	NA	NA
M4	chr7	123001421	12A2p6	cell line	sgMsh2	123001421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	48	106	20	0.188679245	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon18:c.A4650G:p.E1550E	7qF2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	AAA	synonymous	NA	NA	NA	NA
M4	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	31	117	25	0.213675214	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9439279	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	123179823	12A2p6	cell line	sgMsh2	123179823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	98	91	23	0.252747253	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon12:c.A3756G:p.K1252K	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	AAG	synonymous	NA	NA	NA	NA
M4	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	87	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	62	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9725644	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	127474715	12A2p6	cell line	sgMsh2	127474715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	65	64	11	0.171875	exonic	Prr14	synonymous SNV	Prr14:NM_145589:exon6:c.A750G:p.V250V	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	TAC	synonymous	NA	NA	NA	NA
M4	chr7	127549720	12A2p6	cell line	sgMsh2	127549720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	104	46	14	0.304347826	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon27:c.A6112C:p.I2038L	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	84	14	5	0.357142857	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	48	2	1	0.5	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	GTT	synonymous	NA	NA	NA	NA
M4	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	35	20	5	0.25	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.743131153	1	0.6895039	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	183	204	50	0.245098039	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999958	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	92	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.751977952	2	8.16E-06	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;MuSe;Vardict	3	0.086	141	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.380412376	3	0.9919544	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr7	128244664	12A2p6	cell line	sgMsh2	128244664	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.107	28	29	0	0	exonic	Armc5	synonymous SNV	Armc5:NM_146205:exon6:c.G2628A:p.R876R	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.47330377	2	0.7051733	GGC	synonymous	GGCT	9	GGCTGGCTG	NA
M4	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	48	54	14	0.259259259	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	96	163	36	0.220858896	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.800635349	1	0.7870413	CAC	synonymous	NA	NA	NA	NA
M4	chr7	128446198	12A2p6	cell line	sgMsh2	128446198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	186	41	0.220430108	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon6:c.A444G:p.K148K,Tial1:NM_009383:exon6:c.A495G:p.K165K,Tial1:NM_001347641:exon7:c.A327G:p.K109K"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	GTT	synonymous	NA	NA	NA	NA
M4	chr7	129390951	12A2p6	cell line	sgMsh2	129390951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	85	0	0	NA	exonic	Plpp4	nonsynonymous SNV	Plpp4:NM_001080963:exon7:c.T712C:p.Y238H	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	101	146	24	0.164383562	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994478	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr7	130743554	12A2p6	cell line	sgMsh2	130743554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	1	1	1	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_021314:exon10:c.A2171T:p.E724V,Tacc2:NM_206856:exon13:c.A2501T:p.E834V,Tacc2:NM_001004468:exon14:c.A7700T:p.E2567V"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	131074450	12A2p6	cell line	sgMsh2	131074450	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	268	2	0	0	exonic	Dmbt1	synonymous SNV	"Dmbt1:NM_007769:exon20:c.T2034G:p.L678L,Dmbt1:NM_001347632:exon21:c.T2067G:p.L689L"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9862039	TTT	synonymous	NA	NA	NA	NA
M4	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	169	1	0	0	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999904	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr7	132991616	12A2p6	cell line	sgMsh2	132991616	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	301	80	0.265780731	exonic	Ctbp2	nonsynonymous SNV	"Ctbp2:NM_001170744:exon5:c.C2355G:p.H785Q,Ctbp2:NM_001347623:exon5:c.C651G:p.H217Q,Ctbp2:NM_009980:exon7:c.C726G:p.H242Q"	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.884679944	1	0.9701356	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr7	133880625	12A2p6	cell line	sgMsh2	133880625	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	147	0	0	NA	exonic	Fank1	frameshift deletion	Fank1:NM_025850:exon11:c.1000delA:p.K336Rfs*51	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	AAGAA	18	AAGAAAAGAAAAAAAAGA	-1
M4	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	73	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M4	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9417281	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	139582036	12A2p6	cell line	sgMsh2	139582036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	34	0	0	NA	exonic	Nkx6-2	nonsynonymous SNV	Nkx6-2:NM_183248:exon2:c.C424A:p.L142M	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9200421	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr7	139936998	12A2p6	cell line	sgMsh2	139936998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	149	0	0	NA	exonic	Kndc1	nonsynonymous SNV	Kndc1:NM_177261:exon29:c.A4789C:p.I1597L	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9622263	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	140176434	12A2p6	cell line	sgMsh2	140176434	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	113	0	0	NA	exonic	Olfr523	nonsynonymous SNV	Olfr523:NM_146518:exon1:c.T331A:p.Y111N	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997296	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	158	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2714	70	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M4	chr7	140922447	12A2p6	cell line	sgMsh2	140922447	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	57	0	0	NA	exonic	Nlrp6	nonsynonymous SNV	Nlrp6:NM_133946:exon4:c.G375T:p.Q125H	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr7	141432693	12A2p6	cell line	sgMsh2	141432693	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	14	2	0.142857143	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon5:c.A263T:p.D88V,Slc25a22:NM_001360723:exon5:c.A263T:p.D88V,Slc25a22:NM_001360724:exon5:c.A4T:p.T2S,Slc25a22:NM_026646:exon5:c.A263T:p.D88V"	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9966626	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	105	229	64	0.279475983	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995648	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	124	251	61	0.243027888	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9998007	GTT	synonymous	NA	NA	NA	NA
M4	chr7	142678723	12A2p6	cell line	sgMsh2	142678723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	51	0	0	NA	exonic	Ins2	nonsynonymous SNV	"Ins2:NM_001185084:exon2:c.A323G:p.Y108C,Ins2:NM_001185083:exon3:c.A323G:p.Y108C,Ins2:NM_008387:exon3:c.A323G:p.Y108C"	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9892762	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	65	8	1	0.125	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	59	7	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.526384567	2	0.9090467	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr7	144515997	12A2p6	cell line	sgMsh2	144515997	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	55	54	10	0.185185185	exonic	Ppfia1	nonsynonymous SNV	"Ppfia1:NM_001033319:exon9:c.G1198A:p.A400T,Ppfia1:NM_001195086:exon9:c.G1198A:p.A400T"	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	2	1	1	0.9915293	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	270	84	0.311111111	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	1	1	0.999657	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	130	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.8936705	GTA	synonymous	NA	NA	NA	NA
M4	chr7	145261979	12A2p6	cell line	sgMsh2	145261979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	76	12	3	0.25	exonic	Tpcn2	nonsynonymous SNV	Tpcn2:NM_146206:exon15:c.T1316C:p.L439P	7qF5	chr7-3896664-145323643	4	2	2	0.99	4.379165722	NA	1	0.774094951	1	0.6733738	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	3512744	12A2p6	cell line	sgMsh2	3512744	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	117	89	17	0.191011236	exonic	Mcoln1	nonsynonymous SNV	Mcoln1:NM_053177:exon12:c.G1454A:p.G485D	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997869	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	226	69	14	0.202898551	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9999154	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	3688831	12A2p6	cell line	sgMsh2	3688831	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.305	118	0	0	NA	exonic	Fcer2a	frameshift insertion	"Fcer2a:NM_001253737:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253739:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253746:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253747:exon4:c.105dupA:p.F36Ifs*3,Fcer2a:NM_001253743:exon5:c.144dupA:p.F49Ifs*3,Fcer2a:NM_013517:exon5:c.225dupA:p.F76Ifs*3"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M4	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	127	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998825	GTA	synonymous	NA	NA	NA	NA
M4	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	343	227	65	0.286343612	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	1.31E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M4	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	227	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999997	AAG	synonymous	NA	NA	NA	NA
M4	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	93	46	6	0.130434783	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	175	1	0	0	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999933	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	76	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	2	1	1	0.9975588	TCG	synonymous	NA	NA	NA	NA
M4	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	120	77	12	0.155844156	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998218	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr8	13781433	12A2p6	cell line	sgMsh2	13781433	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	101	368	63	0.171195652	exonic	Cdc16	frameshift deletion	"Cdc16:NM_001357247:exon17:c.1383delA:p.N463Tfs*13,Cdc16:NM_027276:exon18:c.1665delA:p.N557Tfs*13"	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	97	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992995	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	16234128	12A2p6	cell line	sgMsh2	16234128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	42	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon13:c.A1615G:p.T539A	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.09881731	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	103	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.875833144	1	0.9754008	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	32	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9674904	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	66	3	1	0.333333333	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr8	23180916	12A2p6	cell line	sgMsh2	23180916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	200	292	66	0.226027397	exonic	Gpat4	synonymous SNV	Gpat4:NM_018743:exon6:c.A645G:p.L215L	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999985	TTA	synonymous	NA	NA	NA	NA
M4	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	190	1	0	0	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999972	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	145	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M4	chr8	24922292	12A2p6	cell line	sgMsh2	24922292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	19	2	0	0	exonic	Adam32	stopgain	"Adam32:NM_001293693:exon4:c.G247T:p.G83X,Adam32:NM_153397:exon4:c.G247T:p.G83X"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9319201	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	69	3	0	0	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9963014	AGT	nonsynonymous	NA	NA	NA	NA
M4	chr8	25817606	12A2p6	cell line	sgMsh2	25817606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	169	71	19	0.267605634	exonic	Ash2l	nonsynonymous SNV	"Ash2l:NM_001080793:exon15:c.C1495T:p.P499S,Ash2l:NM_001286207:exon15:c.C1495T:p.P499S,Ash2l:NM_011791:exon15:c.C1762T:p.P588S,Ash2l:NM_001359012:exon16:c.C1780T:p.P594S"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.5044705	GGG	nonsynonymous	NA	NA	NA	NA
M4	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	125	30	6	0.2	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9952302	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	72	42	10	0.238095238	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	46	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	69	80	21	0.2625	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9760811	GGG	synonymous	NA	NA	NA	NA
M4	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	75	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	GTT	synonymous	NA	NA	NA	NA
M4	chr8	40826069	12A2p6	cell line	sgMsh2	40826069	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	374	0	0	NA	exonic	Adam39	nonsynonymous SNV	Adam39:NM_001025380:exon2:c.A1496G:p.N499S	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	1.05E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr8	41259226	12A2p6	cell line	sgMsh2	41259226	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	113	66	19	0.287878788	exonic	Pcm1	nonsynonymous SNV	Pcm1:NM_023662:exon4:c.G532A:p.A178T	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9919729	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	452	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	509	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	136	368	67	0.182065217	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.756401352	2	0.6505924	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	128	27	9	0.333333333	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.760824752	2	0.5800781	CAC	synonymous	NA	NA	NA	NA
M4	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	124	63	14	0.222222222	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	TTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	75	92	3	0.032608696	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.756401352	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M4	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	82	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr8	53599412	12A2p6	cell line	sgMsh2	53599412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	175	16	1	0.0625	exonic	Neil3	nonsynonymous SNV	Neil3:NM_146208:exon8:c.A1150G:p.T384A	8qB1.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999933	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	155	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999778	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	124	10	2	0.2	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	133	14	2	0.142857143	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	TGT	nonsynonymous	NA	NA	NA	NA
M4	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	138	236	69	0.292372881	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	ACG	nonsynonymous	NA	NA	NA	NA
M4	chr8	60671704	12A2p6	cell line	sgMsh2	60671704	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	108	0	0	NA	exonic	Mfap3l	synonymous SNV	"Mfap3l:NM_001293769:exon2:c.A670C:p.R224R,Mfap3l:NM_001177881:exon3:c.A979C:p.R327R,Mfap3l:NM_001177882:exon3:c.A979C:p.R327R,Mfap3l:NM_027756:exon3:c.A979C:p.R327R"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9994281	AAG	synonymous	NA	NA	NA	NA
M4	chr8	62057808	12A2p6	cell line	sgMsh2	62057808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	61	969	147	0.151702786	exonic	Anxa10	synonymous SNV	"Anxa10:NM_011922:exon11:c.T849C:p.N283N,Anxa10:NM_001136089:exon12:c.T909C:p.N303N"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9940585	AAT	synonymous	NA	NA	NA	NA
M4	chr8	64117910	12A2p6	cell line	sgMsh2	64117910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	65	0	0	NA	exonic	Tll1	synonymous SNV	Tll1:NM_009390:exon5:c.T627C:p.P209P	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	AAG	synonymous	NA	NA	NA	NA
M4	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	48	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.987206	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	66704013	12A2p6	cell line	sgMsh2	66704013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	138	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon2:c.A84G:p.E28E,Npy1r:NM_001358955:exon3:c.A84G:p.E28E"	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.999939	AAA	synonymous	NA	NA	NA	NA
M4	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	92	14	4	0.285714286	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	69102178	12A2p6	cell line	sgMsh2	69102178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	245	190	39	0.205263158	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon5:c.G400A:p.G134R	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.999915	CGG	nonsynonymous	NA	NA	NA	NA
M4	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	124	5	2	0.4	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	69881218	12A2p6	cell line	sgMsh2	69881218	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	32	0	0	NA	exonic	Cilp2	synonymous SNV	Cilp2:NM_026818:exon8:c.C3129T:p.L1043L	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9674904	CGA	synonymous	NA	NA	NA	NA
M4	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	179	790	166	0.210126582	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9995637	CGA	synonymous	NA	NA	NA	NA
M4	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	57	26	9	0.346153846	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.7295132	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	70402451	12A2p6	cell line	sgMsh2	70402451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	65	15	0	0	exonic	Crtc1	nonsynonymous SNV	Crtc1:NM_001004062:exon5:c.A518G:p.Q173R	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9953116	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	70451561	12A2p6	cell line	sgMsh2	70451561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	112	39	7	0.179487179	exonic	Klhl26	synonymous SNV	"Klhl26:NM_001122830:exon2:c.A1515G:p.T505T,Klhl26:NM_178771:exon3:c.A1698G:p.T566T,Klhl26:NM_001364258:exon4:c.A1455G:p.T485T"	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997131	CTG	synonymous	NA	NA	NA	NA
M4	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	139	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9996795	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	71545799	12A2p6	cell line	sgMsh2	71545799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	50	130	31	0.238461538	exonic	Mvb12a	nonsynonymous SNV	Mvb12a:NM_028617:exon6:c.T577C:p.S193P	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.849292746	1	0.8950485	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr8	71634633	12A2p6	cell line	sgMsh2	71634633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	51	0	0	NA	exonic	Unc13a	nonsynonymous SNV	Unc13a:NM_001029873:exon39:c.A4469G:p.K1490R	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	48	67	23	0.343283582	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	2	1	1	0.987206	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M4	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	15	8	0.533333333	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	34	67	8	0.119402985	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.971036	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	75629738	12A2p6	cell line	sgMsh2	75629738	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	155	0	0	NA	exonic	Iqcm	synonymous SNV	"Iqcm:NM_027944:exon6:c.C498T:p.H166H,Iqcm:NM_001164235:exon7:c.C498T:p.H166H"	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.99992	ACA	synonymous	NA	NA	NA	NA
M4	chr8	77187587	12A2p6	cell line	sgMsh2	77187587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	131	27	7	0.259259259	exonic	Nr3c2	synonymous SNV	Nr3c2:NM_001083906:exon6:c.G2421A:p.S807S	8qC1	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	CGT	synonymous	NA	NA	NA	NA
M4	chr8	80663502	12A2p6	cell line	sgMsh2	80663502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	82	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon3:c.G5381T:p.G1794V	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	103	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995098	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.123	64	249	50	0.200803213	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.544078165	2	0.9347559	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M4	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	146	36	0.246575342	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996136	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr8	83730210	12A2p6	cell line	sgMsh2	83730210	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	75	125	40	0.32	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163030:exon5:c.C406A:p.H136N,Adgre5:NM_011925:exon6:c.C541A:p.H181N"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	TGG	nonsynonymous	GTGG	8	GTGGGTGG	NA
M4	chr8	84029454	12A2p6	cell line	sgMsh2	84029454	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	97	0	0	NA	exonic	Palm3	nonsynonymous SNV	Palm3:NM_028877:exon7:c.A1594G:p.T532A	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9992995	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	22	15	2	0.133333333	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.8911441	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	84883487	12A2p6	cell line	sgMsh2	84883487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	104	33	5	0.151515152	exonic	Syce2	nonsynonymous SNV	"Syce2:NM_001168246:exon3:c.T203C:p.L68P,Syce2:NM_027954:exon3:c.T185C:p.L62P"	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CTG	nonsynonymous	GAA	9	GAAGAAGAA	NA
M4	chr8	85009334	12A2p6	cell line	sgMsh2	85009334	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	156	0	0	NA	exonic	Best2	nonsynonymous SNV	Best2:NM_001130194:exon9:c.G970A:p.E324K	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999791	TCA	nonsynonymous	CATCT	10	CATCTCATCT	NA
M4	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	46	116	37	0.318965517	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	85096483	12A2p6	cell line	sgMsh2	85096483	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	50	100	36	0.36	exonic	Man2b1	synonymous SNV	Man2b1:NM_010764:exon21:c.G2652A:p.A884A	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	CGA	synonymous	NA	NA	NA	NA
M4	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	149	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9999112	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	62	39	8	0.205128205	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	1	1	0.9944	TTT	nonsynonymous	G	5	GGGGG	NA
M4	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	168	18	4	0.222222222	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-92679958	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8022202	ATC	synonymous	NA	NA	NA	NA
M4	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	110	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	CAA	synonymous	NA	NA	NA	NA
M4	chr8	93370095	12A2p6	cell line	sgMsh2	93370095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon4:c.C504A:p.T168T	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999425	TGG	synonymous	NA	NA	NA	NA
M4	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	86	30	8	0.266666667	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8264174	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	57	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.992473	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	94558251	12A2p6	cell line	sgMsh2	94558251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	72	26	0.361111111	exonic	Cpne2	nonsynonymous SNV	Cpne2:NM_153507:exon11:c.T1054C:p.Y352H	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9986525	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	101	13	0.128712871	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.769671551	1	0.6630718	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	95076264	12A2p6	cell line	sgMsh2	95076264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	56	0	0	NA	exonic	Drc7	synonymous SNV	Drc7:NM_001042715:exon16:c.T2217C:p.H739H	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	2	1	1	0.992015	ATG	synonymous	NA	NA	NA	NA
M4	chr8	95105773	12A2p6	cell line	sgMsh2	95105773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	108	19	6	0.315789474	exonic	Kifc3	nonsynonymous SNV	"Kifc3:NM_001145832:exon10:c.G1147T:p.V383F,Kifc3:NM_001372315:exon12:c.G1558T:p.V520F,Kifc3:NM_010631:exon12:c.G1558T:p.V520F,Kifc3:NM_001372316:exon13:c.G1345T:p.V449F,Kifc3:NM_001372317:exon13:c.G1345T:p.V449F,Kifc3:NM_001145831:exon14:c.G1420T:p.V474F,Kifc3:NM_001372312:exon14:c.G2026T:p.V676F,Kifc3:NM_001372314:exon14:c.G1879T:p.V627F,Kifc3:NM_001372313:exon15:c.G1879T:p.V627F"	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.676780157	2	0.9445384	ACA	nonsynonymous	NA	NA	NA	NA
M4	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	115	179	35	0.195530726	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	208	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999991	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	151	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999718	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	96	169	20	0.118343195	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.840445947	1	0.9230547	CTT	synonymous	NA	NA	NA	NA
M4	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	255	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9999999	GAC	synonymous	NA	NA	NA	NA
M4	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	118	211	41	0.194312796	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997992	AAT	nonsynonymous	NA	NA	NA	NA
M4	chr8	105522171	12A2p6	cell line	sgMsh2	105522171	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	85	1	1	1	exonic	Hsd11b2	synonymous SNV	Hsd11b2:NM_008289:exon2:c.A294C:p.T98T	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	CAG	synonymous	NA	NA	NA	NA
M4	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	113	31	3	0.096774194	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.875833144	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	2	0	0	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	111	30	3	0.1	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996955	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	72	89	15	0.168539326	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9924955	GGC	synonymous	NA	NA	NA	NA
M4	chr8	106053402	12A2p6	cell line	sgMsh2	106053402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	67	18	2	0.111111111	exonic	Dus2	nonsynonymous SNV	"Dus2:NM_001301176:exon15:c.A1016G:p.K339R,Dus2:NM_025518:exon16:c.A1355G:p.K452R"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9958357	AAG	nonsynonymous	CAAGCG	12	CAAGCGCAAGCG	NA
M4	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	36	30	7	0.233333333	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	2	1	1	0.9742046	GCC	nonsynonymous	NA	NA	NA	NA
M4	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	82	40	4	0.1	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.862562945	1	0.9477493	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	102	38	8	0.210526316	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	GAG	synonymous	NA	NA	NA	NA
M4	chr8	108955670	12A2p6	cell line	sgMsh2	108955670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	36	18	8	0.444444444	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon10:c.A9740G:p.K3247R	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.7636272	AAG	nonsynonymous	GAAAG	20	GAAAGGAAAGGAGAAGGAAA	NA
M4	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	78	63	18	0.285714286	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9868408	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M4	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	388	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	1.02E-09	ACA	synonymous	NA	NA	NA	NA
M4	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	127	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.822752348	1	0.892258	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	55	22	4	0.181818182	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9915293	TAC	synonymous	NA	NA	NA	NA
M4	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	17	6	0.352941176	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999598	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	90	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	111994956	12A2p6	cell line	sgMsh2	111994956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	357	95	0.266106443	exonic	Kars	nonsynonymous SNV	"Kars:NM_053092:exon13:c.A1597G:p.T533A,Kars:NM_001130868:exon14:c.A1684G:p.T562A,Kars:NM_001286384:exon15:c.A1684G:p.T562A,Kars:NM_001363429:exon15:c.A1684G:p.T562A,Kars:NM_001363430:exon16:c.A1684G:p.T562A"	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	112733443	12A2p6	cell line	sgMsh2	112733443	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	70	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon4:c.G427A:p.V143I	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	CGT	nonsynonymous	NA	NA	NA	NA
M4	chr8	119876704	12A2p6	cell line	sgMsh2	119876704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	45	9	1	0.111111111	exonic	Klhl36	nonsynonymous SNV	Klhl36:NM_146219:exon5:c.A1697G:p.Y566C	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9847424	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	73	32	12	0.375	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.95103094	1	0.9912761	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	71	239	64	0.267782427	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.760824752	1	0.61857	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M4	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	31	4	1	0.25	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	9.76E-06	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr8	122501337	12A2p6	cell line	sgMsh2	122501337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	86	34	8	0.235294118	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon9:c.C1118T:p.A373V,Piezo1:NM_001357349:exon9:c.C1121T:p.A374V"	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.99807	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	55	94	23	0.244680851	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9602037	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr8	122621686	12A2p6	cell line	sgMsh2	122621686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	50	0	0	NA	exonic	Pabpn1l	nonsynonymous SNV	Pabpn1l:NM_001007462:exon3:c.A409G:p.N137D	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.827175747	1	0.8584675	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	56	2	0	0	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.992015	GGC	synonymous	NA	NA	NA	NA
M4	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	130	1	1	1	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999017	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M4	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	51	8	0.156862745	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9936963	CCC	nonsynonymous	NA	NA	NA	NA
M4	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	155	39	3	0.076923077	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.765248151	2	0.6210428	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr8	124035177	12A2p6	cell line	sgMsh2	124035177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	98	24	5	0.208333333	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon5:c.T3784C:p.S1262P,Urb2:NM_001368414:exon5:c.T3784C:p.S1262P"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9980631	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	52	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr8	127603121	12A2p6	cell line	sgMsh2	127603121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	29	19	3	0.157894737	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon23:c.A3552G:p.Q1184Q,Pard3:NM_001309391:exon24:c.A3597G:p.Q1199Q,Pard3:NM_001363431:exon24:c.A3507G:p.Q1169Q,Pard3:NM_001363432:exon24:c.A3603G:p.Q1201Q,Pard3:NM_033620:exon24:c.A3594G:p.Q1198Q"	8qE2	chr8-92830365-129138455	4	2	2	0.99	4.379165722	NA	1	1	1	0.9613722	AAC	synonymous	NA	NA	NA	NA
M4	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	58	41	5	0.12195122	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	233	2	0	0	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M4	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	81	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9981861	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	160	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9979773	ATG	synonymous	GAT	8	GATGATGA	NA
M4	chr9	6359783	12A2p6	cell line	sgMsh2	6359783	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	84	0	0	NA	exonic	Pdgfd	synonymous SNV	"Pdgfd:NM_001357397:exon6:c.C835T:p.L279L,Pdgfd:NM_027924:exon6:c.C853T:p.L285L"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9984823	GCT	synonymous	AGCTGA	12	AGCTGAAGCTGA	NA
M4	chr9	6994086	12A2p6	cell line	sgMsh2	6994086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	70	4	1	0.25	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon81:c.G11783A:p.G3928E	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr9	7049114	12A2p6	cell line	sgMsh2	7049114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	122	6	3	0.5	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon63:c.T9785G:p.L3262R	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998418	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	73	10	0	0	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9970828	TCA	synonymous	NA	NA	NA	NA
M4	chr9	7144178	12A2p6	cell line	sgMsh2	7144178	T	-	Deletion	Strelka2;Vardict	2	0.2013	149	6	1	0.166666667	exonic	Dync2h1	frameshift deletion	Dync2h1:NM_029851:exon22:c.3262delA:p.I1088Lfs*8	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.890430363	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M4	chr9	7168344	12A2p6	cell line	sgMsh2	7168344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	128	7	2	0.285714286	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon9:c.T1270C:p.Y424H,Dync2h1:NM_029851:exon9:c.T1270C:p.Y424H"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.721014154	2	0.8690926	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	153	327	68	0.20795107	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9992876	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	8643537	12A2p6	cell line	sgMsh2	8643537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	124	0	0	NA	exonic	Trpc6	nonsynonymous SNV	"Trpc6:NM_001282086:exon5:c.A1322G:p.K441R,Trpc6:NM_013838:exon5:c.A1322G:p.K441R"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.995264937	1	0.9998317	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.209	109	71	15	0.211267606	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9956867	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	108	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996359	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	15996162	12A2p6	cell line	sgMsh2	15996162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	159	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T8555C:p.L2852P	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.9998995	TAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	139	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	157	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9972652	TAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	20897968	12A2p6	cell line	sgMsh2	20897968	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	144	442	94	0.212669683	exonic	Eif3g	nonsynonymous SNV	Eif3g:NM_016876:exon4:c.C160A:p.P54T	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999573	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	107	29	4	0.137931034	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996136	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	51	32	4	0.125	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9892762	CAA	nonsynonymous	A	5	AAAAA	NA
M4	chr9	21299309	12A2p6	cell line	sgMsh2	21299309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	1	0	0	exonic	Ap1m2	synonymous SNV	"Ap1m2:NM_001110300:exon8:c.T1023C:p.N341N,Ap1m2:NM_009678:exon8:c.T1017C:p.N339N"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9950254	CAT	synonymous	NA	NA	NA	NA
M4	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	265	63	0.237735849	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	21509305	12A2p6	cell line	sgMsh2	21509305	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	29	7	0.24137931	exonic	Tmed1	nonsynonymous SNV	"Tmed1:NM_001324510:exon2:c.C104A:p.P35H,Tmed1:NM_010744:exon2:c.C230A:p.P77H"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	38	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.93776074	1	0.9535486	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M4	chr9	26756860	12A2p6	cell line	sgMsh2	26756860	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	126	0	0	NA	exonic	B3gat1	nonsynonymous SNV	"B3gat1:NM_029792:exon3:c.C745T:p.R249W,B3gat1:NM_001310766:exon5:c.C784T:p.R262W"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	CCG	nonsynonymous	NA	NA	NA	NA
M4	chr9	26881782	12A2p6	cell line	sgMsh2	26881782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	58	0	0	NA	exonic	Gm1110	nonsynonymous SNV	Gm1110:NM_001281475:exon18:c.A1697G:p.Q566R	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.774094951	1	7.42E-05	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	77	40	8	0.2	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9863614	TAC	synonymous	NA	NA	NA	NA
M4	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	102	60	13	0.216666667	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	1	0.9994797	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M4	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	45	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	1	0.9847424	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr9	27333788	12A2p6	cell line	sgMsh2	27333788	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	33	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C3050A:p.P1017H	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9693129	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	100	38	11	0.289473684	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.999414	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	49	601	144	0.239600666	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9842282	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	82	12	2	0.166666667	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9982908	CGC	synonymous	NA	NA	NA	NA
M4	chr9	32255664	12A2p6	cell line	sgMsh2	32255664	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	131	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon11:c.T1596C:p.S532S,Arhgap32:NM_001195632:exon20:c.T2643C:p.S881S,Arhgap32:NM_001370957:exon20:c.T2523C:p.S841S,Arhgap32:NM_001370958:exon21:c.T2565C:p.S855S"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	CTT	synonymous	NA	NA	NA	NA
M4	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	206	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999989	TAG	synonymous	NA	NA	NA	NA
M4	chr9	32649380	12A2p6	cell line	sgMsh2	32649380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	87	16	9	0.5625	exonic	Ets1	nonsynonymous SNV	Ets1:NM_001372534:exon2:c.A11G:p.Y4C	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	35188787	12A2p6	cell line	sgMsh2	35188787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	30	17	4	0.235294118	exonic	Tirap	nonsynonymous SNV	"Tirap:NM_001177845:exon6:c.G600T:p.E200D,Tirap:NM_001177846:exon6:c.G600T:p.E200D,Tirap:NM_001177847:exon6:c.G600T:p.E200D,Tirap:NM_054096:exon6:c.G600T:p.E200D"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	1	0.9635259	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	81	222	30	0.135135135	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.836022547	1	0.09809665	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr9	35554568	12A2p6	cell line	sgMsh2	35554568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	115	5	0	0	exonic	Ddx25	nonsynonymous SNV	Ddx25:NM_013932:exon5:c.A356G:p.N119S	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.99976	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	174	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.924490541	1	0.9995901	AGG	synonymous	NA	NA	NA	NA
M4	chr9	36581832	12A2p6	cell line	sgMsh2	36581832	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.095	72	0	0	NA	exonic	Pate8	nonsynonymous SNV	Pate8:NM_001167584:exon2:c.A193T:p.T65S	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.420222973	3	0.5704126	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	37410489	12A2p6	cell line	sgMsh2	37410489	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	52	0	0	NA	exonic	Robo4	stopgain	Robo4:NM_028783:exon13:c.G2059T:p.G687X	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	50	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	93	4	1	0.25	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	TAT	synonymous	NA	NA	NA	NA
M4	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	215	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999994	GTA	synonymous	NA	NA	NA	NA
M4	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	129	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	161	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9997807	AGA	nonsynonymous	NA	NA	NA	NA
M4	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	416	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	1.00E-09	GTT	synonymous	NA	NA	NA	NA
M4	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	217	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9999975	TTT	synonymous	NA	NA	NA	NA
M4	chr9	38607056	12A2p6	cell line	sgMsh2	38607056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	290	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.T590C:p.I197T	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	8.17E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr9	38607351	12A2p6	cell line	sgMsh2	38607351	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	148	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.A885C:p.K295N	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999663	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	193	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.897950143	1	0.9990035	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	255	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.973147938	1	0.9999995	GCA	nonsynonymous	NA	NA	NA	NA
M4	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	264	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	3.47E-08	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	217	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999994	CCT	synonymous	NA	NA	NA	NA
M4	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	188	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999969	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	39019219	12A2p6	cell line	sgMsh2	39019219	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	315	0	0	NA	exonic	Olfr146	frameshift deletion	Olfr146:NM_146747:exon1:c.321delT:p.F107Lfs*39	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	165	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999878	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	213	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	1	0.9999993	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	193	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999977	CTG	synonymous	NA	NA	NA	NA
M4	chr9	39623427	12A2p6	cell line	sgMsh2	39623427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	265	0	0	NA	exonic	Olfr960	synonymous SNV	Olfr960:NM_146279:exon1:c.T303C:p.H101H	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	3.28E-08	ATT	synonymous	NA	NA	NA	NA
M4	chr9	39623870	12A2p6	cell line	sgMsh2	39623870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	272	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.T746C:p.M249T	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	2.20E-08	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	235	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.955454339	1	0.9999952	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	39942613	12A2p6	cell line	sgMsh2	39942613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	161	0	0	NA	exonic	Olfr974	nonsynonymous SNV	Olfr974:NM_147107:exon1:c.A352G:p.M118V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999845	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	40001162	12A2p6	cell line	sgMsh2	40001162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	192	0	0	NA	exonic	Olfr979	nonsynonymous SNV	Olfr979:NM_147108:exon1:c.G64A:p.D22N	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999975	TCC	nonsynonymous	NA	NA	NA	NA
M4	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	49	4	0	0	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9879366	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	119	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998108	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M4	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	26	35	6	0.171428571	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9541507	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	42330269	12A2p6	cell line	sgMsh2	42330269	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	127	1	0	0	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon24:c.A6409T:p.I2137F,Tecta:NM_009347:exon24:c.A6424T:p.I2142F,Tecta:NM_001378602:exon25:c.A6424T:p.I2142F"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9997624	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	150	55	8	0.145454545	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999701	CAG	synonymous	NA	NA	NA	NA
M4	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	7	2	0.285714286	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	27	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9566913	ACG	synonymous	NA	NA	NA	NA
M4	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	139	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M4	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	31	26	8	0.307692308	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	9.76E-06	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	44715884	12A2p6	cell line	sgMsh2	44715884	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	94	46	12	0.260869565	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon6:c.C1263A:p.P421P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.588312163	2	0.9867054	AGG	synonymous	NA	NA	NA	NA
M4	chr9	45001018	12A2p6	cell line	sgMsh2	45001018	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	90	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon6:c.C427T:p.P143S	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.959877739	1	0.9967757	GGC	nonsynonymous	CTTGGC	15	CTTGGCCTTGGCCTT	NA
M4	chr9	45255890	12A2p6	cell line	sgMsh2	45255890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	104	0	0	NA	exonic	Il10ra	synonymous SNV	"Il10ra:NM_001324486:exon7:c.A1362G:p.P454P,Il10ra:NM_008348:exon7:c.A1368G:p.P456P"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	CTG	synonymous	NA	NA	NA	NA
M4	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	75	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9974094	TGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	45775745	12A2p6	cell line	sgMsh2	45775745	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	63	45	11	0.244444444	exonic	Cep164	nonsynonymous SNV	Cep164:NM_001081373:exon20:c.G2479A:p.E827K	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.853716146	1	0.9168031	TCC	nonsynonymous	CTC	8	CTCCTCCT	NA
M4	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	79	29	13	0.448275862	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.813905548	1	0.8405375	CTC	synonymous	NA	NA	NA	NA
M4	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	59	14	8	0.571428571	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9933122	GAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	49416677	12A2p6	cell line	sgMsh2	49416677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	36	0	0	NA	exonic	Ankk1	nonsynonymous SNV	"Ankk1:NM_001376951:exon8:c.G1204A:p.A402T,Ankk1:NM_172922:exon8:c.G1201A:p.A401T"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9742046	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	187	11	1	0.090909091	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999967	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	53398017	12A2p6	cell line	sgMsh2	53398017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	76	67	13	0.194029851	exonic	Poglut3	nonsynonymous SNV	Poglut3:NM_212445:exon7:c.T1379C:p.V460A	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9975588	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	178	38	2	0.052631579	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9994242	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	83	4	2	0.5	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9983894	CAT	synonymous	NA	NA	NA	NA
M4	chr9	54887394	12A2p6	cell line	sgMsh2	54887394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	124	92	16	0.173913043	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon8:c.T1013C:p.L338P	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	56114307	12A2p6	cell line	sgMsh2	56114307	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	53	0	0	NA	exonic	Pstpip1	nonsynonymous SNV	Pstpip1:NM_011193:exon2:c.T114G:p.D38E	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9904685	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.027	804	78	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.119431792	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	186	73	15	0.205479452	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.844869346	1	0.9752053	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M4	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.131	41	25	2	0.08	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.579465363	2	0.7771315	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	1	0	0	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995381	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	119	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	162	17	4	0.235294118	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999854	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	59344092	12A2p6	cell line	sgMsh2	59344092	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	87	20	2	0.1	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon3:c.C124T:p.H42Y,Bbs4:NM_175325:exon3:c.C124T:p.H42Y"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9987303	TGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	59562999	12A2p6	cell line	sgMsh2	59562999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	128	196	44	0.224489796	exonic	Hexa	nonsynonymous SNV	Hexa:NM_010421:exon11:c.T1276C:p.Y426H	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.756401352	2	0.6218775	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	127	2435	399	0.16386037	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998825	GGA	nonsynonymous	NA	NA	NA	NA
M4	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	126	126	29	0.23015873	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998753	GTA	nonsynonymous	NA	NA	NA	NA
M4	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	49	38	1	0.026315789	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.716590754	1	0.000944905	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	29	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.09417419	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr9	65322664	12A2p6	cell line	sgMsh2	65322664	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	222	58	11	0.189655172	exonic	Clpx	synonymous SNV	"Clpx:NM_001044389:exon10:c.T1393C:p.L465L,Clpx:NM_011802:exon11:c.T1435C:p.L479L"	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999996	GTT	synonymous	NA	NA	NA	NA
M4	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	181	59	15	0.254237288	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.986418137	1	0.9999899	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	110	15	4	0.266666667	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996768	GTA	synonymous	NA	NA	NA	NA
M4	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	106	18	5	0.277777778	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9995899	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M4	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	153	25	9	0.36	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.968724538	1	0.9998908	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	52	27	4	0.148148148	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9898897	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	69408274	12A2p6	cell line	sgMsh2	69408274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	79	22	5	0.227272727	exonic	Ice2	synonymous SNV	Ice2:NM_145618:exon5:c.T411C:p.H137H	9qC	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9979572	ATG	synonymous	NA	NA	NA	NA
M4	chr9	70034292	12A2p6	cell line	sgMsh2	70034292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	170	459	121	0.263616558	exonic	Gcnt3	synonymous SNV	Gcnt3:NM_028087:exon3:c.T993C:p.L331L	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999909	AAA	synonymous	NA	NA	NA	NA
M4	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	75	131	65	0.496183206	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	2	1	1	0.9974094	GCT	synonymous	NA	NA	NA	NA
M4	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	107	111	29	0.261261261	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9996136	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	125	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998676	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	116	105	31	0.295238095	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.774094951	1	0.5795595	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	93	11	1	0.090909091	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9991113	AAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	133	43	8	0.186046512	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999178	AAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	77001655	12A2p6	cell line	sgMsh2	77001655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	152	0	0	NA	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon7:c.A1003C:p.K335Q	9qD	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999735	TTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	149	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999683	ATG	nonsynonymous	NA	NA	NA	NA
M4	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	147	33023	7721	0.233806741	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999193	TTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	118	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997992	GTT	synonymous	NA	NA	NA	NA
M4	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	124	2	0	0	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9998595	ATT	nonsynonymous	NA	NA	NA	NA
M4	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2973	37	119	5	0.042016807	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M4	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	110	96	23	0.239583333	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.738707753	2	0.6937805	TAG	synonymous	NA	NA	NA	NA
M4	chr9	86574215	12A2p6	cell line	sgMsh2	86574215	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	95	4	0	0	exonic	Rwdd2a	nonsynonymous SNV	"Rwdd2a:NM_001145968:exon3:c.C443T:p.A148V,Rwdd2a:NM_001145969:exon3:c.C443T:p.A148V,Rwdd2a:NM_027100:exon3:c.C443T:p.A148V"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.866986345	1	0.9627083	GCG	nonsynonymous	NA	NA	NA	NA
M4	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	66	18	3	0.166666667	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.78294175	1	0.7318356	TTT	nonsynonymous	T	5	TTTTT	NA
M4	chr9	91364036	12A2p6	cell line	sgMsh2	91364036	-	TA	Insertion	Mutect2;Strelka2;Vardict	3	0.283	80	0	0	NA	exonic	Zic1	stopgain	"Zic1:NM_009573:exon1:c.981_982insTA:p.G328fs*0,Zic1:NM_001376941:exon2:c.981_982insTA:p.G328fs*0"	9qE3.2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CCT	nonsynonymous	TG	9	TGTGTGTGT	2
M4	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	25	3	0.12	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9850521	GAA	nonsynonymous	T	5	TTTTT	NA
M4	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Strelka2;Vardict	2	0.2148	135	82	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.95014626	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M4	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	92	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9990568	TAC	synonymous	NA	NA	NA	NA
M4	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	98	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9993399	TAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	44	28	3	0.107142857	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.707743955	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4	chr9	99289273	12A2p6	cell line	sgMsh2	99289273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	50	22	11	0.5	exonic	Cep70	nonsynonymous SNV	Cep70:NM_023873:exon12:c.A1079G:p.Q360R	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9886259	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	99698873	12A2p6	cell line	sgMsh2	99698873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	120	498	123	0.246987952	exonic	Cldn18	synonymous SNV	"Cldn18:NM_001194921:exon2:c.T321C:p.G107G,Cldn18:NM_001194922:exon2:c.T321C:p.G107G,Cldn18:NM_001194923:exon2:c.T321C:p.G107G,Cldn18:NM_019815:exon2:c.T321C:p.G107G"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.78736515	1	0.6838016	TAC	synonymous	NA	NA	NA	NA
M4	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	248	66	16	0.242424242	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.893526743	1	0.9997018	GAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	100985213	12A2p6	cell line	sgMsh2	100985213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	66	14	2	0.142857143	exonic	Pccb	nonsynonymous SNV	"Pccb:NM_001311149:exon12:c.C1208T:p.A403V,Pccb:NM_025835:exon13:c.C1319T:p.A440V"	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9955813	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	68	77	14	0.181818182	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.77851835	1	0.7102546	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	66	75	13	0.173333333	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.725437554	2	0.5410892	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr9	103263181	12A2p6	cell line	sgMsh2	103263181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	147	0	0	NA	exonic	1300017J02Rik	synonymous SNV	1300017J02Rik:NM_027918:exon12:c.T1338C:p.Y446Y	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.78294175	1	6.09E-09	AAT	synonymous	NA	NA	NA	NA
M4	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	176	101	28	0.277227723	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9998539	AAC	synonymous	NA	NA	NA	NA
M4	chr9	105073826	12A2p6	cell line	sgMsh2	105073826	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.274	119	256	5	0.01953125	exonic	Mrpl3	frameshift insertion	"Mrpl3:NM_001364512:exon8:c.476dupA:p.N160Kfs*28,Mrpl3:NM_001364513:exon8:c.791dupA:p.N265Kfs*28,Mrpl3:NM_053159:exon8:c.791dupA:p.N265Kfs*28"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M4	chr9	105774278	12A2p6	cell line	sgMsh2	105774278	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	131	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon8:c.G3533A:p.G1178D,Col6a6:NM_172927:exon8:c.G3533A:p.G1178D"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.813905548	1	0.8552867	ACC	nonsynonymous	NA	NA	NA	NA
M4	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	146	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.906796942	1	0.9974973	ATC	nonsynonymous	NA	NA	NA	NA
M4	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9994941	CAA	nonsynonymous	NA	NA	NA	NA
M4	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.805058749	1	0.8122401	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	60	63	14	0.222222222	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.544078165	2	0.9241046	ACT	nonsynonymous	NA	NA	NA	NA
M4	chr9	106885214	12A2p6	cell line	sgMsh2	106885214	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	49	80	20	0.25	exonic	Rbm15b	nonsynonymous SNV	Rbm15b:NM_175402:exon1:c.A1754C:p.K585T	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	9.10E-05	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	107514942	12A2p6	cell line	sgMsh2	107514942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	91	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174047:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174048:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174049:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174050:exon15:c.A1481G:p.D494G,Cacna2d2:NM_020263:exon15:c.A1481G:p.D494G"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.998999	GAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	107526730	12A2p6	cell line	sgMsh2	107526730	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	70	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174048:exon35:c.G3026T:p.S1009I,Cacna2d2:NM_001174049:exon35:c.G3023T:p.S1008I,Cacna2d2:NM_001174050:exon35:c.G3026T:p.S1009I,Cacna2d2:NM_001174047:exon36:c.G3044T:p.S1015I,Cacna2d2:NM_020263:exon36:c.G3044T:p.S1015I"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9965144	AGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	107584788	12A2p6	cell line	sgMsh2	107584788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	85	1	0	0	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T20C:p.L7P	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9985699	CTA	nonsynonymous	NA	NA	NA	NA
M4	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	107	4	1	0.25	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.94218414	1	0.9974073	CTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	107980081	12A2p6	cell line	sgMsh2	107980081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon18:c.A2141G:p.H714R	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9929505	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	33	11	0.333333333	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.981994738	1	0.9999384	CAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	108	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.964301139	1	0.998807	CTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	108393319	12A2p6	cell line	sgMsh2	108393319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	54	0	0	NA	exonic	1700102P08Rik	nonsynonymous SNV	1700102P08Rik:NM_053216:exon2:c.G81T:p.Q27H	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9910144	AGG	nonsynonymous	NA	NA	NA	NA
M4	chr9	108405043	12A2p6	cell line	sgMsh2	108405043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	84	0	0	NA	exonic	Iho1	nonsynonymous SNV	"Iho1:NM_001135198:exon8:c.A1445G:p.Q482R,Iho1:NM_001379658:exon8:c.A1445G:p.Q482R"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9980772	CTG	nonsynonymous	NA	NA	NA	NA
M4	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	57	129	22	0.170542636	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4	chr9	108534385	12A2p6	cell line	sgMsh2	108534385	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	65	141	7	0.04964539	exonic	Qrich1	frameshift deletion	"Qrich1:NM_175143:exon3:c.1108delA:p.N371Tfs*5,Qrich1:NM_001114119:exon4:c.1108delA:p.N371Tfs*5"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	63	7	2	0.285714286	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.751977952	1	0.6046376	CCT	synonymous	NA	NA	NA	NA
M4	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	80	89	21	0.235955056	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.920067141	1	0.9863586	TAC	synonymous	NA	NA	NA	NA
M4	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	68	8	3	0.375	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	GTG	synonymous	NA	NA	NA	NA
M4	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	35	10	3	0.3	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.743131153	1	0.6895039	GTC	nonsynonymous	NA	NA	NA	NA
M4	chr9	109082012	12A2p6	cell line	sgMsh2	109082012	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	131	483	119	0.246376812	exonic	Tma7	nonsynonymous SNV	Tma7:NM_183250:exon3:c.G150T:p.K50N	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999074	CCT	nonsynonymous	NA	NA	NA	NA
M4	chr9	109690589	12A2p6	cell line	sgMsh2	109690589	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	190	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon7:c.T848C:p.V283A	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999972	AAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	110086218	12A2p6	cell line	sgMsh2	110086218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	79	38	10	0.263157895	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon12:c.C2482A:p.R828R,Dhx30:NM_133347:exon15:c.C2464A:p.R822R,Dhx30:NM_001252682:exon16:c.C2395A:p.R799R"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.796211949	1	0.7740985	CGG	synonymous	NA	NA	NA	NA
M4	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	162	255	48	0.188235294	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999854	GCT	nonsynonymous	NA	NA	NA	NA
M4	chr9	110380285	12A2p6	cell line	sgMsh2	110380285	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	21	47	11	0.234042553	exonic	Scap	synonymous SNV	"Scap:NM_001001144:exon14:c.T2025A:p.G675G,Scap:NM_001103162:exon14:c.T2025A:p.G675G"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9391504	GTC	synonymous	NA	NA	NA	NA
M4	chr9	110384099	12A2p6	cell line	sgMsh2	110384099	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	81	99	22	0.222222222	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon21:c.A3331G:p.T1111A,Scap:NM_001103162:exon21:c.A3331G:p.T1111A"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.998172	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	100	12	2	0.166666667	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9921765	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M4	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	90	5	0	0	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	ATA	synonymous	NA	NA	NA	NA
M4	chr9	110632808	12A2p6	cell line	sgMsh2	110632808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	41	55	15	0.272727273	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.T4580C:p.L1527P	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.9539625	CAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	37	48	11	0.229166667	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.928913941	1	0.946875	GGA	nonsynonymous	G	5	GGGGG	NA
M4	chr9	110636320	12A2p6	cell line	sgMsh2	110636320	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	44	70	19	0.271428571	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon20:c.C2930T:p.A977V	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.63254616	2	0.009163941	GGC	nonsynonymous	NA	NA	NA	NA
M4	chr9	110722545	12A2p6	cell line	sgMsh2	110722545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	58	0	0	NA	exonic	Pth1r	synonymous SNV	"Pth1r:NM_001083936:exon14:c.C1485T:p.S495S,Pth1r:NM_001083935:exon15:c.C1485T:p.S495S,Pth1r:NM_011199:exon16:c.C1485T:p.S495S"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9929049	AGC	synonymous	TAGCTG	12	TAGCTGTAGCTG	NA
M4	chr9	110742259	12A2p6	cell line	sgMsh2	110742259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	42	0	0	NA	exonic	Pth1r	synonymous SNV	"Pth1r:NM_001083936:exon1:c.C42T:p.L14L,Pth1r:NM_001083935:exon2:c.C42T:p.L14L,Pth1r:NM_011199:exon3:c.C42T:p.L14L"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.977571338	1	0.9758369	AGA	synonymous	NA	NA	NA	NA
M4	chr9	111040452	12A2p6	cell line	sgMsh2	111040452	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	114	0	0	NA	exonic	Ltf	nonsynonymous SNV	Ltf:NM_008522:exon16:c.C2024T:p.S675L	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9997453	TCG	nonsynonymous	NA	NA	NA	NA
M4	chr9	112182815	12A2p6	cell line	sgMsh2	112182815	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	37	0	0	NA	exonic	Arpp21	synonymous SNV	"Arpp21:NM_001177615:exon5:c.C264A:p.L88L,Arpp21:NM_001362008:exon5:c.C264A:p.L88L,Arpp21:NM_001362009:exon5:c.C264A:p.L88L,Arpp21:NM_001362000:exon6:c.C264A:p.L88L,Arpp21:NM_001362001:exon6:c.C264A:p.L88L,Arpp21:NM_001362002:exon6:c.C264A:p.L88L,Arpp21:NM_001362005:exon6:c.C264A:p.L88L,Arpp21:NM_001362006:exon6:c.C264A:p.L88L,Arpp21:NM_001362007:exon6:c.C264A:p.L88L,Arpp21:NM_028755:exon6:c.C264A:p.L88L,Arpp21:NM_001177620:exon7:c.C264A:p.L88L,Arpp21:NM_001362003:exon7:c.C264A:p.L88L,Arpp21:NM_001362004:exon7:c.C264A:p.L88L"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9561551	AGA	synonymous	NA	NA	NA	NA
M4	chr9	113909535	12A2p6	cell line	sgMsh2	113909535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	72	22	3	0.136363636	exonic	Clasp2	synonymous SNV	"Clasp2:NM_029633:exon30:c.T3441C:p.P1147P,Clasp2:NM_001286600:exon32:c.T3495C:p.P1165P"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9969044	CTC	synonymous	NA	NA	NA	NA
M4	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	38	9	1	0.111111111	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.915643742	1	0.9406317	TAC	nonsynonymous	NA	NA	NA	NA
M4	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	89	107	34	0.317757009	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9985513	ATC	nonsynonymous	A	5	AAAAA	NA
M4	chr9	115216918	12A2p6	cell line	sgMsh2	115216918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	102	3	3	1	exonic	Osbpl10	nonsynonymous SNV	Osbpl10:NM_148958:exon8:c.A1621G:p.I541V	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9994797	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	158	1	0	0	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9999814	GAG	nonsynonymous	NA	NA	NA	NA
M4	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	47	1	1	1	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.871409745	1	0.9186629	GTG	nonsynonymous	NA	NA	NA	NA
M4	chr9	119348742	12A2p6	cell line	sgMsh2	119348742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	92	75	20	0.266666667	exonic	Acaa1a	nonsynonymous SNV	"Acaa1a:NM_001357516:exon7:c.C332T:p.A111V,Acaa1a:NM_130864:exon8:c.C788T:p.A263V"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.999688336	1	0.9990485	GCC	nonsynonymous	GCCT	8	GCCTGCCT	NA
M4	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	90	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9989377	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M4	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	46	2	0	0	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9856116	CCC	synonymous	NA	NA	NA	NA
M4	chr9	121266311	12A2p6	cell line	sgMsh2	121266311	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	80	3	0	0	exonic	Ulk4	nonsynonymous SNV	Ulk4:NM_177589:exon4:c.A275C:p.N92T	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.902373543	1	0.9790579	GTT	nonsynonymous	NA	NA	NA	NA
M4	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	107	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.94660754	1	0.9977583	GAT	synonymous	NA	NA	NA	NA
M4	chr9	123048544	12A2p6	cell line	sgMsh2	123048544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	95	0	0	NA	exonic	Tgm4	nonsynonymous SNV	Tgm4:NM_177911:exon6:c.A610G:p.I204V	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.990841537	1	0.9989687	CAT	nonsynonymous	NA	NA	NA	NA
M4	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	95	18	0.189473684	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.911220342	1	0.9808129	CAC	synonymous	NA	NA	NA	NA
M4	chr9	123180313	12A2p6	cell line	sgMsh2	123180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	68	63	10	0.158730159	exonic	Cdcp1	synonymous SNV	Cdcp1:NM_133974:exon6:c.T1299C:p.P433P	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9960754	CAG	synonymous	NA	NA	NA	NA
M4	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	154	123	34	0.276422764	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	0.809482149	1	0.8344414	ATA	nonsynonymous	NA	NA	NA	NA
M4	chr9	123827149	12A2p6	cell line	sgMsh2	123827149	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	71	26	6	0.230769231	exonic	Fyco1	nonsynonymous SNV	"Fyco1:NM_001110253:exon9:c.G2963T:p.R988M,Fyco1:NM_148925:exon10:c.G2963T:p.R988M"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.379165722	NA	1	1	1	0.9967152	CCT	nonsynonymous	NA	NA	NA	NA
M4	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;MuSe;Vardict	3	0.352	15	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M4	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	38	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M4	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	51	7	2	0.285714286	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M4	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	127	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M4	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	125	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4	chrX	21486740	12A2p6	cell line	sgMsh2	21486740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	73	0	0	NA	exonic	Agtr2	synonymous SNV	Agtr2:NM_007429:exon3:c.T612C:p.Y204Y	XqA2	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M4	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.572	147	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M4	chrX	46329256	12A2p6	cell line	sgMsh2	46329256	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	109	0	0	NA	exonic	Actrt1	synonymous SNV	Actrt1:NM_028514:exon1:c.A147T:p.A49A	XqA4	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M4	chrX	47947707	12A2p6	cell line	sgMsh2	47947707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.554	61	3	0	0	exonic	Ocrl	frameshift deletion	Ocrl:NM_177215:exon17:c.1711delT:p.F573Lfs*3	XqA5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	3	1	0.333333333	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M4	chrX	57299497	12A2p6	cell line	sgMsh2	57299497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	63	0	0	NA	exonic	Arhgef6	stopgain	"Arhgef6:NM_001358573:exon4:c.G162A:p.W54X,Arhgef6:NM_152801:exon5:c.G693A:p.W231X"	XqA6	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M4	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.534	44	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4	chrX	62290460	12A2p6	cell line	sgMsh2	62290460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	26	0	0	NA	exonic	4933402E13Rik	nonsynonymous SNV	"4933402E13Rik:NM_001199996:exon4:c.G85A:p.V29M,4933402E13Rik:NM_001199997:exon4:c.G85A:p.V29M"	XqA6	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TGT	nonsynonymous	NA	NA	NA	NA
M4	chrX	66654991	12A2p6	cell line	sgMsh2	66654991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	63	0	0	NA	exonic	Slitrk2	nonsynonymous SNV	"Slitrk2:NM_198863:exon2:c.A1087T:p.R363W,Slitrk2:NM_001161431:exon3:c.A1087T:p.R363W"	XqA7.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M4	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	69	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M4	chrX	71667688	12A2p6	cell line	sgMsh2	71667688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	46	1	1	1	exonic	Gpr50	nonsynonymous SNV	Gpr50:NM_010340:exon2:c.A1375G:p.T459A	XqA7.3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M4	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	114	1	1	1	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.538	55	99	43	0.434343434	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M4	chrX	79295219	12A2p6	cell line	sgMsh2	79295219	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	32	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon63:c.G9173T:p.R3058M	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M4	chrX	79319120	12A2p6	cell line	sgMsh2	79319120	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	26	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon57:c.G8255A:p.G2752D	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M4	chrX	79351159	12A2p6	cell line	sgMsh2	79351159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	22	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon48:c.A7032G:p.K2344K	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M4	chrX	79509993	12A2p6	cell line	sgMsh2	79509993	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	20	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon6:c.T875G:p.I292S	XqB	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M4	chrX	85149159	12A2p6	cell line	sgMsh2	85149159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	89	12	5	0.416666667	exonic	Dmd	nonsynonymous SNV	"Dmd:NM_001314035:exon10:c.A1049G:p.D350G,Dmd:NM_001314037:exon10:c.A1049G:p.D350G,Dmd:NM_001314034:exon11:c.A1088G:p.D363G,Dmd:NM_001314036:exon11:c.A1088G:p.D363G,Dmd:NM_007868:exon72:c.A10271G:p.D3424G"	XqC1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M4	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	57	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	48	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M4	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.58	93	10	5	0.5	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M4	chrX	96462998	12A2p6	cell line	sgMsh2	96462998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	96	0	0	NA	exonic	Heph	nonsynonymous SNV	"Heph:NM_001159627:exon3:c.T74C:p.I25T,Heph:NM_001159628:exon3:c.T74C:p.I25T,Heph:NM_010417:exon3:c.T74C:p.I25T,Heph:NM_181273:exon3:c.T74C:p.I25T"	XqC3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	20	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	42	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M4	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.552	57	79	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4	chrX	102078639	12A2p6	cell line	sgMsh2	102078639	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	27	1	1	1	exonic	Nhsl2	nonsynonymous SNV	Nhsl2:NM_001163610:exon6:c.G2047A:p.A683T	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M4	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	63	33	20	0.606060606	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M4	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	82	15	0	0	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M4	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	56	88	39	0.443181818	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M4	chrX	107399652	12A2p6	cell line	sgMsh2	107399652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	37	0	0	NA	exonic	Itm2a	nonsynonymous SNV	Itm2a:NM_008409:exon2:c.G158A:p.C53Y	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GCA	nonsynonymous	GCAT	8	GCATGCAT	NA
M4	chrX	107685316	12A2p6	cell line	sgMsh2	107685316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	86	0	0	NA	exonic	Tbx22	synonymous SNV	"Tbx22:NM_001290747:exon6:c.C804T:p.G268G,Tbx22:NM_145224:exon9:c.C1410T:p.G470G,Tbx22:NM_181319:exon9:c.C1452T:p.G484G"	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M4	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	75	16	6	0.375	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	108798824	12A2p6	cell line	sgMsh2	108798824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	130	27	8	0.296296296	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon9:c.A845G:p.Y282C	XqD	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.66	54	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M4	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	38	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M4	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	40	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M4	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.706	17	10	10	1	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M4	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	36	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M4	chrX	134720720	12A2p6	cell line	sgMsh2	134720720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	30	9	9	1	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.A570G:p.V190V,Armcx1:NM_001166379:exon4:c.A570G:p.V190V,Armcx1:NM_001166380:exon5:c.A570G:p.V190V,Armcx1:NM_001166377:exon6:c.A570G:p.V190V,Armcx1:NM_030066:exon6:c.A570G:p.V190V"	XqE3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M4	chrX	136772728	12A2p6	cell line	sgMsh2	136772728	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	62	0	0	NA	exonic	Glra4	nonsynonymous SNV	Glra4:NM_010297:exon6:c.A710C:p.N237T	XqF1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	39	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M4	chrX	144474159	12A2p6	cell line	sgMsh2	144474159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.631	48	0	0	NA	exonic	Trpc5os	nonsynonymous SNV	Trpc5os:NM_001195579:exon4:c.T275C:p.I92T	XqF2	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	ATC	nonsynonymous	GATA	8	GATAGATA	NA
M4	chrX	148703240	12A2p6	cell line	sgMsh2	148703240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	97	0	0	NA	exonic	Gm15127	synonymous SNV	Gm15127:NM_001114400:exon7:c.A1341G:p.T447T	XqF2	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M4	chrX	149616692	12A2p6	cell line	sgMsh2	149616692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	147	0	0	NA	exonic	Gm10439	nonsynonymous SNV	Gm10439:NM_001037716:exon4:c.T556C:p.Y186H	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.667	7	27	12	0.444444444	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M4	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	59	8	5	0.625	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M4	chrX	152272960	12A2p6	cell line	sgMsh2	152272960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	8	92	47	0.510869565	exonic	Kdm5c	nonsynonymous SNV	Kdm5c:NM_013668:exon26:c.G4542T:p.Q1514H	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M4	chrX	154575995	12A2p6	cell line	sgMsh2	154575995	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.606	68	0	0	NA	exonic	Samt2	synonymous SNV	Samt2:NM_001037167:exon3:c.A55C:p.R19R	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M4	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	108	133	68	0.511278195	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	157871694	12A2p6	cell line	sgMsh2	157871694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	60	0	0	NA	exonic	Cnksr2	nonsynonymous SNV	"Cnksr2:NM_001310719:exon14:c.A1634G:p.Y545C,Cnksr2:NM_001374835:exon15:c.A1781G:p.Y594C,Cnksr2:NM_177751:exon15:c.A1781G:p.Y594C"	XqF4	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4	chrX	163549211	12A2p6	cell line	sgMsh2	163549211	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	64	0	0	NA	exonic	Grpr	synonymous SNV	Grpr:NM_008177:exon1:c.C87A:p.P29P	XqF4	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGG	synonymous	G	5	GGGGG	NA
M4	chrX	164535496	12A2p6	cell line	sgMsh2	164535496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	67	0	0	NA	exonic	Asb9	nonsynonymous SNV	Asb9:NM_027027:exon7:c.G683A:p.G228D	XqF5	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	58	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.99	4.379165722	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Vardict	2	0.137	38	0	0	NA	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	1	9.00E-05	TGG	synonymous	NA	NA	NA	NA
M4_p20	chr1	4867506	12A2p6	cell line	sgMsh2	4867506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	427	0	0	NA	exonic	Tcea1	nonsynonymous SNV	"Tcea1:NM_001159750:exon2:c.A100G:p.I34V,Tcea1:NM_001159751:exon2:c.A133G:p.I45V,Tcea1:NM_011541:exon2:c.A100G:p.I34V"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	5602536	12A2p6	cell line	sgMsh2	5602536	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	134	0	0	NA	exonic	Oprk1	nonsynonymous SNV	"Oprk1:NM_001204371:exon4:c.C895A:p.L299M,Oprk1:NM_011011:exon4:c.C895A:p.L299M"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.99995	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	5917255	12A2p6	cell line	sgMsh2	5917255	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	45	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.C39A:p.N13K	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9272753	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	57	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9957689	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	44	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9910852	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	8583327	12A2p6	cell line	sgMsh2	8583327	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	274	0	0	NA	exonic	Sntg1	nonsynonymous SNV	"Sntg1:NM_001290393:exon13:c.G688A:p.A230T,Sntg1:NM_001290390:exon14:c.G685A:p.A229T,Sntg1:NM_027671:exon14:c.G688A:p.A230T"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9999997	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	262	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.547135898	2	0.9999992	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	372	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.9999995	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M4_p20	chr1	13152885	12A2p6	cell line	sgMsh2	13152885	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	147	0	0	NA	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon16:c.C3308A:p.P1103Q,Ncoa2:NM_008678:exon17:c.C3515A:p.P1172Q"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	17749529	12A2p6	cell line	sgMsh2	17749529	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	322	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon7:c.C750T:p.T250T,Crispld1:NM_031402:exon7:c.C750T:p.T250T"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9998567	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	84	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991058	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	175	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.656563077	2	0.9993072	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	25559852	12A2p6	cell line	sgMsh2	25559852	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	216	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon3:c.G771T:p.M257I	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	25826149	12A2p6	cell line	sgMsh2	25826149	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	180	0	0	NA	exonic	Adgrb3	synonymous SNV	Adgrb3:NM_175642:exon2:c.G612A:p.E204E	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.651091718	2	0.9996159	ACT	synonymous	NA	NA	NA	NA
M4_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	120	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9990978	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	26683676	12A2p6	cell line	sgMsh2	26683676	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	142	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C2422T:p.L808F	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999685	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	61	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	188	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.765990257	2	0.7835719	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	34252970	12A2p6	cell line	sgMsh2	34252970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	183	0	0	NA	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon59:c.A10873G:p.T3625A,Dst:NM_134448:exon64:c.A16915G:p.T5639A,Dst:NM_001276764:exon68:c.A17776G:p.T5926A"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	322	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.97E-09	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	36472070	12A2p6	cell line	sgMsh2	36472070	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.44	102	0	0	NA	exonic	Cnnm4	frameshift deletion	Cnnm4:NM_033570:exon1:c.378delG:p.M128Cfs*1	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4_p20	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	91	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.8363804	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.131	64	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.5074036	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	38053941	12A2p6	cell line	sgMsh2	38053941	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	240	0	0	NA	exonic	Rev1	nonsynonymous SNV	"Rev1:NM_019570:exon21:c.G3434T:p.G1145V,Rev1:NM_001359287:exon22:c.G1967T:p.G656V,Rev1:NM_001359288:exon24:c.G1871T:p.G624V"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	GCC	nonsynonymous	CTGGC	10	CTGGCCTGGC	NA
M4_p20	chr1	38821218	12A2p6	cell line	sgMsh2	38821218	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	156	0	0	NA	exonic	Lonrf2	nonsynonymous SNV	Lonrf2:NM_001029878:exon2:c.A706G:p.T236A	1qB	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999859	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	246	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	349	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	2	0.853906	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	46140074	12A2p6	cell line	sgMsh2	46140074	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	808	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon18:c.G2774A:p.S925N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	1.34E-09	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	58	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9960051	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	255	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.7520963	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	328	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Vardict	2	0.127	333	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr1	54988042	12A2p6	cell line	sgMsh2	54988042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	205	0	0	NA	exonic	Sf3b1	nonsynonymous SNV	Sf3b1:NM_031179:exon24:c.A3653G:p.N1218S	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.788889	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	55695997	12A2p6	cell line	sgMsh2	55695997	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	119	0	0	NA	exonic	Plcl1	stopgain	Plcl1:NM_001114663:exon2:c.G496T:p.E166X	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.514307744	2	0.9947402	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	94	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M4_p20	chr1	58434347	12A2p6	cell line	sgMsh2	58434347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	375	0	0	NA	exonic	Ppil3	nonsynonymous SNV	"Ppil3:NM_001285826:exon6:c.T343C:p.Y115H,Ppil3:NM_001285827:exon6:c.T343C:p.Y115H,Ppil3:NM_027351:exon6:c.T343C:p.Y115H,Ppil3:NM_027374:exon6:c.T343C:p.Y115H"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	3.20E-08	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	141	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999331	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	159	0	0	NA	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.388466487	3	0.9885638	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	130	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9761625	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	211	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	66555061	12A2p6	cell line	sgMsh2	66555061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	438	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon22:c.A3604G:p.I1202V,Unc80:NM_001368825:exon22:c.A3604G:p.I1202V,Unc80:NM_175510:exon22:c.A3598G:p.I1200V"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	69873175	12A2p6	cell line	sgMsh2	69873175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	329	0	0	NA	exonic	Spag16	nonsynonymous SNV	"Spag16:NM_001271533:exon7:c.T668C:p.V223A,Spag16:NM_029160:exon7:c.T668C:p.V223A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.65E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	69996888	12A2p6	cell line	sgMsh2	69996888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	189	0	0	NA	exonic	Spag16	synonymous SNV	"Spag16:NM_025728:exon2:c.T87G:p.L29L,Spag16:NM_029160:exon11:c.T1074G:p.L358L"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999979	TTC	synonymous	NA	NA	NA	NA
M4_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	212	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9908382	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	142	0	0	NA	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999685	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	248	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	74594652	12A2p6	cell line	sgMsh2	74594652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	150	0	0	NA	exonic	Rnf25	nonsynonymous SNV	"Rnf25:NM_001305230:exon9:c.G697A:p.E233K,Rnf25:NM_021313:exon9:c.G700A:p.E234K"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	132	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9963695	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	254	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.03E-08	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	94	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	75183017	12A2p6	cell line	sgMsh2	75183017	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	25	0	0	NA	exonic	Atg9a	nonsynonymous SNV	"Atg9a:NM_001003917:exon14:c.G2245T:p.G749C,Atg9a:NM_001288612:exon14:c.G2245T:p.G749C,Atg9a:NM_001288613:exon14:c.G1591T:p.G531C"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9737857	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	75216050	12A2p6	cell line	sgMsh2	75216050	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	429	0	0	NA	exonic	Tuba4a	nonsynonymous SNV	"Tuba4a:NM_001313724:exon3:c.C460A:p.P154T,Tuba4a:NM_001313723:exon4:c.C313A:p.P105T,Tuba4a:NM_009447:exon4:c.C919A:p.P307T"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	101	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.744104821	2	0.5997616	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	178	0	0	NA	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9997746	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	205	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.6430958	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.391	40	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	91	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9910538	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	88228309	12A2p6	cell line	sgMsh2	88228309	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	1196	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon3:c.C162T:p.D54D	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.202440282	3	1	ACA	synonymous	NA	NA	NA	NA
M4_p20	chr1	88230773	12A2p6	cell line	sgMsh2	88230773	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	760	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon5:c.C541A:p.L181M	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.224325718	3	1	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	410	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.229797077	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	88256541	12A2p6	cell line	sgMsh2	88256541	C	-	Deletion	Mutect2;Vardict	2	0.057	399	0	0	NA	exonic	Mroh2a	frameshift deletion	Mroh2a:NM_001281466:exon36:c.4246delC:p.R1417Gfs*2	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.311867462	NA	NA	TCC	frameshift	NA	NA	NA	-1
M4_p20	chr1	90810688	12A2p6	cell line	sgMsh2	90810688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	135	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon5:c.T1287C:p.G429G,Col6a3:NM_001243008:exon8:c.T3108C:p.G1036G"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999528	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr1	91309849	12A2p6	cell line	sgMsh2	91309849	C	-	Deletion	Mutect2;Vardict	2	0.178	130	0	0	NA	exonic	Scly	frameshift deletion	Scly:NM_016717:exon7:c.794delC:p.L267Cfs*22	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4_p20	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	11	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.942737	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M4_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	165	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9999545	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	318	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.23E-09	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	136	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.7543508	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	208	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	160	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	2	0.7926018	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	94024473	12A2p6	cell line	sgMsh2	94024473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	130	0	0	NA	exonic	Neu4	nonsynonymous SNV	"Neu4:NM_173772:exon4:c.T494C:p.V165A,Neu4:NM_001310769:exon5:c.T563C:p.V188A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	2	0.9694465	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Vardict	2	0.166	78	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4_p20	chr1	106712619	12A2p6	cell line	sgMsh2	106712619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	62	0	0	NA	exonic	Bcl2	nonsynonymous SNV	"Bcl2:NM_009741:exon1:c.C262T:p.P88S,Bcl2:NM_177410:exon1:c.C262T:p.P88S"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9968257	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	106779038	12A2p6	cell line	sgMsh2	106779038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	368	0	0	NA	exonic	Vps4b	nonsynonymous SNV	Vps4b:NM_009190:exon8:c.A803G:p.D268G	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.662034436	2	4.09E-08	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	106995906	12A2p6	cell line	sgMsh2	106995906	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	163	0	0	NA	exonic	Serpinb13	nonsynonymous SNV	Serpinb13:NM_172852:exon4:c.C340A:p.L114I	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999906	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	111861881	12A2p6	cell line	sgMsh2	111861881	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.324	157	0	0	NA	exonic	Dsel	frameshift insertion	Dsel:NM_001081316:exon2:c.922dupT:p.W308Lfs*22	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CCA	frameshift	A	5	AAAAA	1
M4_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.361	276	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M4_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	326	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9999987	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	174	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999995	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	123336844	12A2p6	cell line	sgMsh2	123336844	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	230	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon25:c.G2248A:p.G750R	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9998752	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	123341158	12A2p6	cell line	sgMsh2	123341158	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	90	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon24:c.A2141C:p.N714T	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9676657	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.346	303	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.92E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	142	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999365	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	122	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999001	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999812	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	387	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	265	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9997084	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	72	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9982147	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.113	64	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.618263564	2	0.888322	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M4_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	137	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999579	GGC	synonymous	NA	NA	NA	NA
M4_p20	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	184	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999972	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr1	132527752	12A2p6	cell line	sgMsh2	132527752	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	55	0	0	NA	exonic	Cntn2	frameshift deletion	Cntn2:NM_177129:exon7:c.746delC:p.P249Qfs*83	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4_p20	chr1	133284968	12A2p6	cell line	sgMsh2	133284968	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	141	0	0	NA	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon14:c.G2069A:p.G690D,Plekha6:NM_182930:exon17:c.G2231A:p.G744D"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	0.9990357	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	133384551	12A2p6	cell line	sgMsh2	133384551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	85	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon13:c.A1474G:p.T492A	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	31	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9813139	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	134144060	12A2p6	cell line	sgMsh2	134144060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	272	0	0	NA	exonic	Chit1	nonsynonymous SNV	"Chit1:NM_001284524:exon5:c.A307G:p.T103A,Chit1:NM_001284525:exon5:c.A307G:p.T103A,Chit1:NM_027979:exon5:c.A307G:p.T103A"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.999964	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	134203378	12A2p6	cell line	sgMsh2	134203378	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	181	0	0	NA	exonic	Adora1	nonsynonymous SNV	"Adora1:NM_001008533:exon2:c.T554C:p.F185S,Adora1:NM_001291928:exon2:c.T284C:p.F95S,Adora1:NM_001291930:exon2:c.T128C:p.F43S,Adora1:NM_001039510:exon3:c.T554C:p.F185S,Adora1:NM_001282945:exon3:c.T554C:p.F185S"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999967	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	134348070	12A2p6	cell line	sgMsh2	134348070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	227	0	0	NA	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon8:c.T1064C:p.V355A,Tmem183a:NM_020588:exon8:c.T1067C:p.V356A"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9993142	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	135455138	12A2p6	cell line	sgMsh2	135455138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	53	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon17:c.A3835G:p.T1279A	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.219	210	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.219	210	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	136487104	12A2p6	cell line	sgMsh2	136487104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	148	0	0	NA	exonic	Kif14	nonsynonymous SNV	Kif14:NM_001287179:exon11:c.A2327G:p.Y776C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999777	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	136521193	12A2p6	cell line	sgMsh2	136521193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	101	0	0	NA	exonic	Kif14	nonsynonymous SNV	Kif14:NM_001287179:exon26:c.T4330C:p.F1444L	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996644	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	218	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	480	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr1	140099038	12A2p6	cell line	sgMsh2	140099038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	189	0	0	NA	exonic	Cfh	nonsynonymous SNV	Cfh:NM_009888:exon20:c.T3211C:p.C1071R	1qF	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999979	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	143770645	12A2p6	cell line	sgMsh2	143770645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	136	0	0	NA	exonic	Ro60	nonsynonymous SNV	Ro60:NM_013835:exon2:c.A361G:p.I121V	1qF	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	1	0.5384599	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	253	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr1	150701960	12A2p6	cell line	sgMsh2	150701960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	129	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon39:c.A6049G:p.S2017G	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.605982	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	264	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.87E-08	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	455	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	7.23E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	157	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.7301712	AAG	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr1	157230121	12A2p6	cell line	sgMsh2	157230121	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.251	108	0	0	NA	exonic	Rasal2	frameshift insertion	Rasal2:NM_177644:exon4:c.478dupC:p.R160Pfs*25	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GCG	frameshift	G	5	GGGGG	1
M4_p20	chr1	157465029	12A2p6	cell line	sgMsh2	157465029	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	369	0	0	NA	exonic	Cryzl2	nonsynonymous SNV	"Cryzl2:NM_001033284:exon5:c.A380C:p.K127T,Cryzl2:NM_001356418:exon5:c.A380C:p.K127T,Cryzl2:NM_001356419:exon5:c.A380C:p.K127T"	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.06E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	158246682	12A2p6	cell line	sgMsh2	158246682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon8:c.A1868G:p.Q623R	1qH1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	366	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.08E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	161864023	12A2p6	cell line	sgMsh2	161864023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	199	0	0	NA	exonic	Suco	nonsynonymous SNV	"Suco:NM_001357401:exon2:c.T65C:p.L22P,Suco:NM_001357402:exon2:c.T65C:p.L22P,Suco:NM_172645:exon2:c.T65C:p.L22P"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	33	0	0	NA	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9833163	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr1	162231725	12A2p6	cell line	sgMsh2	162231725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	127	0	0	NA	exonic	Dnm3	nonsynonymous SNV	"Dnm3:NM_001038619:exon14:c.A1588G:p.M530V,Dnm3:NM_172646:exon14:c.A1588G:p.M530V"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999251	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	333	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.52E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	212	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	165551108	12A2p6	cell line	sgMsh2	165551108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	196	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon20:c.T977C:p.M326T,Adcy10:NM_173029:exon20:c.T2465C:p.M822T"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999986	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	145	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999735	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	69	0	0	NA	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.58543541	2	0.957433	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	149	0	0	NA	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.552607256	2	0.9998808	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	206	0	0	NA	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr1	170681063	12A2p6	cell line	sgMsh2	170681063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	161	0	0	NA	exonic	Olfml2b	nonsynonymous SNV	Olfml2b:NM_177068:exon7:c.A1489C:p.I497L	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999895	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	232	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	171403931	12A2p6	cell line	sgMsh2	171403931	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	273	0	0	NA	exonic	Arhgap30	nonsynonymous SNV	Arhgap30:NM_001005508:exon7:c.C815A:p.T272N	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.75E-08	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	172113100	12A2p6	cell line	sgMsh2	172113100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	195	0	0	NA	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon20:c.G2052T:p.Q684H	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	79	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	2	0.7517537	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	88	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992899	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	173130301	12A2p6	cell line	sgMsh2	173130301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	309	0	0	NA	exonic	Olfr1408	synonymous SNV	Olfr1408:NM_146764:exon2:c.T915C:p.C305C	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.06E-09	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr1	173183735	12A2p6	cell line	sgMsh2	173183735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	305	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G698A:p.R233Q	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.60E-09	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	536	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.431	423	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2	2	0.054	271	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.295453385	3	1.16E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	380	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.541664539	2	1.21E-08	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	314	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.9990488	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	174181066	12A2p6	cell line	sgMsh2	174181066	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	106	0	0	NA	exonic	Spta1	nonsynonymous SNV	Spta1:NM_011465:exon6:c.T735A:p.D245E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	174502907	12A2p6	cell line	sgMsh2	174502907	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.173	59	0	0	NA	exonic	Fmn2	frameshift insertion	Fmn2:NM_019445:exon1:c.863dupC:p.S290Lfs*35	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	NA	NA	CGC	frameshift	C	5	CCCCC	1
M4_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	215	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	116	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998587	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	83	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9990527	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	159	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999882	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	73	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.382	109	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M4_p20	chr1	181162206	12A2p6	cell line	sgMsh2	181162206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	373	0	0	NA	exonic	Cnih4	nonsynonymous SNV	Cnih4:NM_030131:exon4:c.A383G:p.Y128C	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.9665467	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	45	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9915808	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr1	182747339	12A2p6	cell line	sgMsh2	182747339	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	204	0	0	NA	exonic	Ccdc185	nonsynonymous SNV	Ccdc185:NM_001033547:exon1:c.C1784T:p.A595V	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	184944834	12A2p6	cell line	sgMsh2	184944834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	262	0	0	NA	exonic	Mark1	nonsynonymous SNV	"Mark1:NM_001378876:exon2:c.A218G:p.K73R,Mark1:NM_145515:exon2:c.A218G:p.K73R"	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.8476179	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	185283917	12A2p6	cell line	sgMsh2	185283917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	142	0	0	NA	exonic	Rab3gap2	nonsynonymous SNV	Rab3gap2:NM_001163754:exon35:c.A4085G:p.E1362G	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9953686	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	188553281	12A2p6	cell line	sgMsh2	188553281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	42	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon29:c.A6013G:p.T2005A	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.009994125	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	223	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	189295644	12A2p6	cell line	sgMsh2	189295644	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	94	0	0	NA	exonic	Kcnk2	stopgain	"Kcnk2:NM_001159850:exon3:c.G425A:p.W142X,Kcnk2:NM_001281847:exon3:c.G389A:p.W130X,Kcnk2:NM_010607:exon3:c.G380A:p.W127X"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	189659952	12A2p6	cell line	sgMsh2	189659952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	170	0	0	NA	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon12:c.A1682G:p.N561S	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999937	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	191561520	12A2p6	cell line	sgMsh2	191561520	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	156	0	0	NA	exonic	Dtl	nonsynonymous SNV	"Dtl:NM_029766:exon7:c.G544T:p.V182L,Dtl:NM_001305233:exon8:c.G172T:p.V58L"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999859	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	176	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999956	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	106	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997485	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	161	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999895	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	274	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.65E-08	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	259	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.79E-08	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	253	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	203	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	11457275	12A2p6	cell line	sgMsh2	11457275	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	84	0	0	NA	exonic	Epm2a	nonsynonymous SNV	Epm2a:NM_010146:exon4:c.T851A:p.I284N	10qA1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991058	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CGC	synonymous	NA	NA	NA	NA
M4_p20	chr10	13182312	12A2p6	cell line	sgMsh2	13182312	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	120	0	0	NA	exonic	Ltv1	synonymous SNV	Ltv1:NM_181470:exon6:c.A747G:p.E249E	10qA2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998878	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	124	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999911	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	128	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	85	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991559	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	89	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993297	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	20339742	12A2p6	cell line	sgMsh2	20339742	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	100	0	0	NA	exonic	Bclaf1	nonsynonymous SNV	"Bclaf1:NM_001025393:exon11:c.G2428A:p.A810T,Bclaf1:NM_001025392:exon12:c.G2575A:p.A859T,Bclaf1:NM_153787:exon12:c.G2569A:p.A857T"	10qA3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996445	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	22370887	12A2p6	cell line	sgMsh2	22370887	A	G	SNV	Mutect2;Vardict	2	0.097	463	0	0	NA	exonic	Raet1d	nonsynonymous SNV	Raet1d:NM_020030:exon4:c.A113G:p.N38S	10qA3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.530721821	2	5.79E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	25513051	12A2p6	cell line	sgMsh2	25513051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	172	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001358755:exon15:c.A2041G:p.T681A,Epb41l2:NM_001358754:exon16:c.A2356G:p.T786A,Epb41l2:NM_001358751:exon17:c.A2728G:p.T910A,Epb41l2:NM_001358753:exon18:c.A2533G:p.T845A,Epb41l2:NM_001199265:exon19:c.A2938G:p.T980A,Epb41l2:NM_013511:exon19:c.A2938G:p.T980A"	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999944	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	105	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997336	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	29218194	12A2p6	cell line	sgMsh2	29218194	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	198	0	0	NA	exonic	9330159F19Rik	nonsynonymous SNV	9330159F19Rik:NM_001162537:exon2:c.G75T:p.E25D	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	103	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr10	31951077	12A2p6	cell line	sgMsh2	31951077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	311	0	0	NA	exonic	Nkain2	synonymous SNV	Nkain2:NM_001025286:exon4:c.A516G:p.E172E	10qA4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.84E-09	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr10	33766495	12A2p6	cell line	sgMsh2	33766495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	287	0	0	NA	exonic	Sult3a2	nonsynonymous SNV	Sult3a2:NM_001101452:exon6:c.T811C:p.F271L	10qB1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.34E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	158	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999875	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr10	41464291	12A2p6	cell line	sgMsh2	41464291	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	130	0	0	NA	exonic	Zbtb24	nonsynonymous SNV	"Zbtb24:NM_001277229:exon6:c.A1316G:p.Y439C,Zbtb24:NM_153398:exon7:c.A1382G:p.Y461C"	10qB2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999937	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	80	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr10	42197031	12A2p6	cell line	sgMsh2	42197031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	166	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1489G:p.T497A,Foxo3:NM_019740:exon3:c.A1489G:p.T497A"	10qB2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999921	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	56	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	110	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998003	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	308	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.19E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	51481285	12A2p6	cell line	sgMsh2	51481285	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	0	0	NA	exonic	Lilr4b	nonsynonymous SNV	Lilr4b:NM_008147:exon3:c.A216T:p.E72D	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999832	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	51494112	12A2p6	cell line	sgMsh2	51494112	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	444	0	0	NA	exonic	Lilrb4a	synonymous SNV	"Lilrb4a:NM_001291894:exon6:c.C484T:p.L162L,Lilrb4a:NM_013532:exon6:c.C745T:p.L249L"	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	132	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	1	0.6644496	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr10	52128447	12A2p6	cell line	sgMsh2	52128447	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	117	0	0	NA	exonic	Ros1	frameshift deletion	Ros1:NM_011282:exon21:c.3076delA:p.T1026Hfs*35	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr10	52400715	12A2p6	cell line	sgMsh2	52400715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	107	0	0	NA	exonic	Nepn	synonymous SNV	Nepn:NM_025684:exon2:c.T546C:p.P182P	10qB3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr10	58477121	12A2p6	cell line	sgMsh2	58477121	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	276	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.C3662T:p.S1221F	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.48E-08	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	34	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9842368	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr10	59352149	12A2p6	cell line	sgMsh2	59352149	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	151	0	0	NA	exonic	P4ha1	synonymous SNV	"P4ha1:NM_001316370:exon7:c.C727T:p.L243L,P4ha1:NM_001316371:exon8:c.C967T:p.L323L,P4ha1:NM_011030:exon8:c.C967T:p.L323L"	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9998488	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr10	60306185	12A2p6	cell line	sgMsh2	60306185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	104	0	0	NA	exonic	Cdh23	nonsynonymous SNV	Cdh23:NM_001252635:exon62:c.T9116C:p.L3039P	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	61103258	12A2p6	cell line	sgMsh2	61103258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	202	0	0	NA	exonic	Sgpl1	synonymous SNV	"Sgpl1:NM_001316673:exon12:c.C1161T:p.Y387Y,Sgpl1:NM_001316674:exon12:c.C1161T:p.Y387Y,Sgpl1:NM_009163:exon12:c.C1161T:p.Y387Y"	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	CGT	synonymous	NA	NA	NA	NA
M4_p20	chr10	61343629	12A2p6	cell line	sgMsh2	61343629	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	21	0	0	NA	exonic	Pald1	nonsynonymous SNV	"Pald1:NM_001372378:exon12:c.T1463G:p.L488R,Pald1:NM_013753:exon12:c.T1460G:p.L487R"	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9671975	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	99	0	0	NA	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr10	62665293	12A2p6	cell line	sgMsh2	62665293	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	145	0	0	NA	exonic	Stox1	nonsynonymous SNV	Stox1:NM_001033260:exon3:c.T1487C:p.M496T	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	CAT	nonsynonymous	ATGC	8	ATGCATGC	NA
M4_p20	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	441	0	0	NA	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	139	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	68098161	12A2p6	cell line	sgMsh2	68098161	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	260	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A1910G:p.D637G	10qB5.2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	0.9997148	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	86	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	2	0.9929271	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	234	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	70950074	12A2p6	cell line	sgMsh2	70950074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	212	0	0	NA	exonic	Bicc1	nonsynonymous SNV	"Bicc1:NM_001347189:exon10:c.A1237G:p.R413G,Bicc1:NM_031397:exon10:c.A1237G:p.R413G"	10qB5.3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	75553761	12A2p6	cell line	sgMsh2	75553761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	45	0	0	NA	exonic	Lrrc75b	nonsynonymous SNV	Lrrc75b:NM_198860:exon4:c.T755C:p.V252A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9915808	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	75584876	12A2p6	cell line	sgMsh2	75584876	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	65	0	0	NA	exonic	Ggt1	synonymous SNV	"Ggt1:NM_008116:exon9:c.T1074C:p.T358T,Ggt1:NM_001305992:exon10:c.T1074C:p.T358T,Ggt1:NM_001379540:exon10:c.T1074C:p.T358T,Ggt1:NM_001379541:exon10:c.T1074C:p.T358T,Ggt1:NM_001379537:exon11:c.T1074C:p.T358T,Ggt1:NM_001379538:exon11:c.T1074C:p.T358T,Ggt1:NM_001379539:exon11:c.T1074C:p.T358T"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	0.6013077	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	158	0	0	NA	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999875	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	49	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9933041	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	165	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999916	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	94	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9981601	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	357	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	1.75E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	77720913	12A2p6	cell line	sgMsh2	77720913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	225	0	0	NA	exonic	Krtap12-1	nonsynonymous SNV	Krtap12-1:NM_010670:exon1:c.C289T:p.P97S	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	GCC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M4_p20	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr10	77996344	12A2p6	cell line	sgMsh2	77996344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	210	0	0	NA	exonic	Pfkl	synonymous SNV	Pfkl:NM_008826:exon9:c.G912A:p.T304T	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr10	78586119	12A2p6	cell line	sgMsh2	78586119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	47	0	0	NA	exonic	Syde1	nonsynonymous SNV	Syde1:NM_027875:exon7:c.T1775C:p.V592A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	147	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999764	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	35	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9851073	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	56	0	0	NA	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9912412	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80287586	12A2p6	cell line	sgMsh2	80287586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	46	0	0	NA	exonic	Dazap1	nonsynonymous SNV	"Dazap1:NM_001122604:exon12:c.A1096G:p.S366G,Dazap1:NM_001122605:exon12:c.A1096G:p.S366G,Dazap1:NM_001378995:exon12:c.A1099G:p.S367G,Dazap1:NM_133188:exon12:c.A1093G:p.S365G"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.992049	CAG	nonsynonymous	CCAG	9	CCAGCCAGC	NA
M4_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	87	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M4_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	76	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.209	66	0	0	NA	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9974782	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	49	0	0	NA	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	20	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9653132	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Vardict	2	0.501	5	0	0	NA	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9187868	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	29	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9790761	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	210	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	0.9999835	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	112	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998221	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	88	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992899	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	80907506	12A2p6	cell line	sgMsh2	80907506	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	38	0	0	NA	exonic	Lmnb2	nonsynonymous SNV	Lmnb2:NM_010722:exon3:c.A428T:p.Q143L	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9874444	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	81179092	12A2p6	cell line	sgMsh2	81179092	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	191	0	0	NA	exonic	Eef2	synonymous SNV	Eef2:NM_007907:exon5:c.C624T:p.V208V	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999981	TCC	synonymous	NA	NA	NA	NA
M4_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	83	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	81420728	12A2p6	cell line	sgMsh2	81420728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	101	0	0	NA	exonic	Nfic	nonsynonymous SNV	"Nfic:NM_008688:exon2:c.T101C:p.L34P,Nfic:NM_026756:exon2:c.T101C:p.L34P"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996644	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	81489952	12A2p6	cell line	sgMsh2	81489952	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	188	0	0	NA	exonic	Ncln	nonsynonymous SNV	Ncln:NM_134009:exon8:c.G1058T:p.S353I	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.771461615	2	0.7215456	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	146	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999975	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr10	84528396	12A2p6	cell line	sgMsh2	84528396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	100	0	0	NA	exonic	Ckap4	nonsynonymous SNV	Ckap4:NM_175451:exon2:c.A802G:p.T268A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996445	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	88340629	12A2p6	cell line	sgMsh2	88340629	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	146	0	0	NA	exonic	Dram1	nonsynonymous SNV	Dram1:NM_027878:exon3:c.T233A:p.V78E	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999975	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	99	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	101	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996644	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	171	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999941	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	91096121	12A2p6	cell line	sgMsh2	91096121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	107	0	0	NA	exonic	Ikbip	nonsynonymous SNV	Ikbip:NM_026166:exon3:c.A626G:p.N209S	10qC2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997626	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	99758284	12A2p6	cell line	sgMsh2	99758284	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	297	0	0	NA	exonic	Csl	nonsynonymous SNV	Csl:NM_027945:exon1:c.G918T:p.Q306H	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.12E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	103404710	12A2p6	cell line	sgMsh2	103404710	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	233	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon8:c.T1193A:p.V398D,Slc6a15:NM_001358821:exon8:c.T1193A:p.V398D,Slc6a15:NM_175328:exon9:c.T1193A:p.V398D"	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	107023690	12A2p6	cell line	sgMsh2	107023690	C	-	Deletion	Mutect2;Vardict	2	0.114	83	0	0	NA	exonic	Acss3	frameshift deletion	"Acss3:NM_001142804:exon7:c.1047delG:p.P350Lfs*60,Acss3:NM_198636:exon7:c.1047delG:p.P350Lfs*60"	10qD1	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4_p20	chr10	115342637	12A2p6	cell line	sgMsh2	115342637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	83	0	0	NA	exonic	Tmem19	nonsynonymous SNV	"Tmem19:NM_001359470:exon6:c.A925G:p.S309G,Tmem19:NM_001359471:exon7:c.A880G:p.S294G,Tmem19:NM_001359472:exon7:c.A880G:p.S294G,Tmem19:NM_133683:exon7:c.A880G:p.S294G"	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	126	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999207	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr10	115412429	12A2p6	cell line	sgMsh2	115412429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	296	0	0	NA	exonic	Zfc3h1	nonsynonymous SNV	Zfc3h1:NM_001033261:exon16:c.C3442T:p.P1148S	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.465065513	2	0.9155131	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	117759286	12A2p6	cell line	sgMsh2	117759286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	112	0	0	NA	exonic	Nup107	synonymous SNV	Nup107:NM_134010:exon24:c.T2151C:p.P717P	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998221	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr10	119210766	12A2p6	cell line	sgMsh2	119210766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	154	0	0	NA	exonic	Cand1	nonsynonymous SNV	Cand1:NM_027994:exon10:c.T2818C:p.C940R	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9894868	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	106	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997485	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M4_p20	chr10	121267047	12A2p6	cell line	sgMsh2	121267047	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	84	0	0	NA	exonic	Tbc1d30	synonymous SNV	"Tbc1d30:NM_029057:exon12:c.C2079A:p.A693A,Tbc1d30:NM_001361015:exon13:c.C2448A:p.A816A"	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991058	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	150	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	241	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr10	123175946	12A2p6	cell line	sgMsh2	123175946	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	212	0	0	NA	exonic	Usp15	nonsynonymous SNV	"Usp15:NM_001301628:exon3:c.A245G:p.H82R,Usp15:NM_027604:exon3:c.A245G:p.H82R"	10qD2	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.7258967	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	212	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	126013352	12A2p6	cell line	sgMsh2	126013352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	89	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon18:c.T2940C:p.C980C	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993297	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	85	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	CCG	synonymous	NA	NA	NA	NA
M4_p20	chr10	127042004	12A2p6	cell line	sgMsh2	127042004	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.556	11	0	0	NA	exonic	Mettl1	nonsynonymous SNV	Mettl1:NM_010792:exon1:c.A26C:p.Q9P	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.942737	CAG	nonsynonymous	C	6	CCCCCC	NA
M4_p20	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	194	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999984	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	220	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	107	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr10	128116127	12A2p6	cell line	sgMsh2	128116127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	186	0	0	NA	exonic	Baz2a	synonymous SNV	Baz2a:NM_054078:exon9:c.C1713T:p.G571G	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.990315974	1	0.9999955	GCC	synonymous	NA	NA	NA	NA
M4_p20	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	230	0	0	NA	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr10	128323627	12A2p6	cell line	sgMsh2	128323627	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	103	0	0	NA	exonic	Cnpy2	synonymous SNV	Cnpy2:NM_019953:exon3:c.C132T:p.R44R	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	1	0.6957619	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr10	128846564	12A2p6	cell line	sgMsh2	128846564	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	233	0	0	NA	exonic	Sarnp	nonsynonymous SNV	"Sarnp:NM_001359403:exon5:c.C281A:p.S94Y,Sarnp:NM_001359404:exon5:c.C284A:p.S95Y,Sarnp:NM_001359405:exon5:c.C281A:p.S94Y,Sarnp:NM_025364:exon5:c.C284A:p.S95Y,Sarnp:NM_001359406:exon6:c.C35A:p.S12Y,Sarnp:NM_001359407:exon6:c.C35A:p.S12Y"	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	210	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	106	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997485	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M4_p20	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	80	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129704911	12A2p6	cell line	sgMsh2	129704911	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	273	0	0	NA	exonic	Olfr804	nonsynonymous SNV	Olfr804:NM_001011821:exon1:c.T32A:p.I11N	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129705777	12A2p6	cell line	sgMsh2	129705777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	128	0	0	NA	exonic	Olfr804	nonsynonymous SNV	Olfr804:NM_001011821:exon1:c.T898C:p.W300R	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129722611	12A2p6	cell line	sgMsh2	129722611	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	598	0	0	NA	exonic	Olfr805	frameshift deletion	Olfr805:NM_146555:exon1:c.932delA:p.N311Tfs*3	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4_p20	chr10	129790687	12A2p6	cell line	sgMsh2	129790687	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	308	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A901T:p.N301Y	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TTA	nonsynonymous	AATG	8	AATGAATG	NA
M4_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	336	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	129902575	12A2p6	cell line	sgMsh2	129902575	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	327	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.C152T:p.A51V	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	394	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr11	3488538	12A2p6	cell line	sgMsh2	3488538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Pla2g3	nonsynonymous SNV	Pla2g3:NM_172791:exon1:c.A187G:p.R63G	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998878	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	209	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	4178196	12A2p6	cell line	sgMsh2	4178196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	64	0	0	NA	exonic	Sf3a1	nonsynonymous SNV	Sf3a1:NM_026175:exon13:c.C2071T:p.P691S	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9971707	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	4670461	12A2p6	cell line	sgMsh2	4670461	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	38	0	0	NA	exonic	Ascc2	nonsynonymous SNV	"Ascc2:NM_001376980:exon12:c.A1004G:p.E335G,Ascc2:NM_029291:exon13:c.A1346G:p.E449G"	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9874444	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	62	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9801548	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	5689277	12A2p6	cell line	sgMsh2	5689277	G	T	SNV	Mutect2;Strelka2	2	0.146	72	0	0	NA	exonic	Ankrd36	nonsynonymous SNV	Ankrd36:NM_023816:exon27:c.G4188T:p.E1396D	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.8343046	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M4_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	165	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999916	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	117	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998667	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	244	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	6676635	12A2p6	cell line	sgMsh2	6676635	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	62	0	0	NA	exonic	Ramp3	nonsynonymous SNV	Ramp3:NM_019511:exon3:c.C341A:p.P114Q	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	CCG	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr11	9328158	12A2p6	cell line	sgMsh2	9328158	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	194	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon24:c.C9337A:p.L3113I	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999984	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	192	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999982	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	131	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999405	TTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	217	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	GCA	synonymous	NA	NA	NA	NA
M4_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	149	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999789	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	265	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.71E-08	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M4_p20	chr11	23884104	12A2p6	cell line	sgMsh2	23884104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	28	0	0	NA	exonic	Papolg	nonsynonymous SNV	Papolg:NM_172555:exon6:c.A449G:p.D150G	11qA3.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9778608	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	188	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999978	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	30113869	12A2p6	cell line	sgMsh2	30113869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	270	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon27:c.A5909G:p.Y1970C,Sptbn1:NM_175836:exon27:c.A5948G:p.Y1983C"	11qA3.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.06E-08	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	353	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.16E-09	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	150	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	31965762	12A2p6	cell line	sgMsh2	31965762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	15	0	0	NA	exonic	4930524B15Rik	stopgain	4930524B15Rik:NM_026262:exon1:c.C103T:p.R35X	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9541813	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999995	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	190	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9999861	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	255	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.75E-08	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	111	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998115	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	413	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	118	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998741	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	67	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	286	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.78E-09	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M4_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	176	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	203	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	134	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.6297987	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	362	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.10E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	261	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.39E-08	AAC	synonymous	AACA	8	AACAAACA	NA
M4_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992899	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	44410330	12A2p6	cell line	sgMsh2	44410330	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	223	0	0	NA	exonic	Il12b	nonsynonymous SNV	Il12b:NM_001303244:exon5:c.C672A:p.S224R	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	46456407	12A2p6	cell line	sgMsh2	46456407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	218	0	0	NA	exonic	Havcr2	synonymous SNV	Havcr2:NM_134250:exon2:c.T210C:p.T70T	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	87	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992478	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr11	48800564	12A2p6	cell line	sgMsh2	48800564	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	105	0	0	NA	exonic	Rack1	nonsynonymous SNV	Rack1:NM_008143:exon1:c.C101T:p.A34V	11qB1.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997336	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	49261859	12A2p6	cell line	sgMsh2	49261859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	154	0	0	NA	exonic	Mgat1	nonsynonymous SNV	"Mgat1:NM_001110149:exon2:c.T1168C:p.Y390H,Mgat1:NM_001110150:exon3:c.T1168C:p.Y390H,Mgat1:NM_010794:exon3:c.T1168C:p.Y390H,Mgat1:NM_001110148:exon4:c.T1168C:p.Y390H"	11qB1.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999842	GTA	nonsynonymous	GTACA	10	GTACAGTACA	NA
M4_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	387	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	295	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.63E-09	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	63	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9970032	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	50161488	12A2p6	cell line	sgMsh2	50161488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	115	0	0	NA	exonic	Tbc1d9b	nonsynonymous SNV	"Tbc1d9b:NM_001290759:exon16:c.A2518T:p.N840Y,Tbc1d9b:NM_001290760:exon16:c.A2521T:p.N841Y,Tbc1d9b:NM_029745:exon16:c.A2521T:p.N841Y"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	50232605	12A2p6	cell line	sgMsh2	50232605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	79	0	0	NA	exonic	Mgat4b	synonymous SNV	Mgat4b:NM_145926:exon8:c.T837C:p.T279T	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	9.12E-06	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	33	0	0	NA	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9833163	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	230	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	67	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	GCC	synonymous	NA	NA	NA	NA
M4_p20	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	179	0	0	NA	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999963	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	84	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9961608	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	155	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	93	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994678	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	108	0	0	NA	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997759	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	278	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.33E-08	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	58	0	0	NA	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9960051	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	55289306	12A2p6	cell line	sgMsh2	55289306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	252	0	0	NA	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon6:c.T4208C:p.V1403A	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	106	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	156	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999859	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M4_p20	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	56	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	58702248	12A2p6	cell line	sgMsh2	58702248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	589	0	0	NA	exonic	Olfr319	synonymous SNV	Olfr319:NM_146500:exon1:c.A546G:p.P182P	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr11	58720289	12A2p6	cell line	sgMsh2	58720289	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	439	0	0	NA	exonic	Olfr318	nonsynonymous SNV	Olfr318:NM_146501:exon1:c.T758C:p.V253A	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9998682	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	666	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AGT	synonymous	NA	NA	NA	NA
M4_p20	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	699	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.48147959	2	0.999909	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M4_p20	chr11	59054780	12A2p6	cell line	sgMsh2	59054780	C	T	SNV	Mutect2;Vardict	2	0.02	533	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon46:c.G12604A:p.V4202I,Obscn:NM_199152:exon50:c.G13759A:p.V4587I"	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.10942718	3	1	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	59055639	12A2p6	cell line	sgMsh2	59055639	G	A	SNV	Mutect2;Vardict	2	0.064	282	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_199152:exon49:c.C13239T:p.A4413A	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.350166974	3	0.9999998	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.19	166	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999921	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	59589837	12A2p6	cell line	sgMsh2	59589837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	178	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.A251C:p.Q84P	11qB1.3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999996	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	60201264	12A2p6	cell line	sgMsh2	60201264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	47	0	0	NA	exonic	Srebf1	synonymous SNV	"Srebf1:NM_001313979:exon16:c.T2829C:p.T943T,Srebf1:NM_001358314:exon16:c.T2772C:p.T924T,Srebf1:NM_001358315:exon16:c.T2751C:p.T917T,Srebf1:NM_011480:exon16:c.T2844C:p.T948T"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9924913	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	50	0	0	NA	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9611968	ACG	synonymous	NA	NA	NA	NA
M4_p20	chr11	61069853	12A2p6	cell line	sgMsh2	61069853	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	210	0	0	NA	exonic	Kcnj12	nonsynonymous SNV	"Kcnj12:NM_001267593:exon2:c.G670A:p.V224M,Kcnj12:NM_010603:exon3:c.G976A:p.V326M"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.136783974	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	139	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	61719892	12A2p6	cell line	sgMsh2	61719892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	161	0	0	NA	exonic	Slc5a10	nonsynonymous SNV	"Slc5a10:NM_001382268:exon1:c.A61G:p.I21V,Slc5a10:NM_001033227:exon2:c.A61G:p.I21V"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999895	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	86	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992032	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	146	0	0	NA	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4_p20	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	173	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999947	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.207	412	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	62595109	12A2p6	cell line	sgMsh2	62595109	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	163	0	0	NA	exonic	Trpv2	nonsynonymous SNV	"Trpv2:NM_001382492:exon11:c.T1658C:p.L553P,Trpv2:NM_001382489:exon12:c.T1832C:p.L611P,Trpv2:NM_001382491:exon12:c.T1832C:p.L611P,Trpv2:NM_011706:exon13:c.T1832C:p.L611P,Trpv2:NM_001382490:exon14:c.T1832C:p.L611P"	11qB2	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999906	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	127	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	163	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999906	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	151	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999812	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	352	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.17E-09	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	216	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	40	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9887973	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	477	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	69101455	12A2p6	cell line	sgMsh2	69101455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	150	0	0	NA	exonic	Per1	nonsynonymous SNV	"Per1:NM_001159367:exon5:c.C534A:p.N178K,Per1:NM_011065:exon5:c.C534A:p.N178K"	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	69364014	12A2p6	cell line	sgMsh2	69364014	T	-	Deletion	Mutect2;Vardict	2	0.267	76	0	0	NA	exonic	Chd3	frameshift deletion	Chd3:NM_146019:exon3:c.499delA:p.T167Qfs*25	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	6	TTTTTT	-1
M4_p20	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	45	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133205-69579350	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	110	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998003	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	69910904	12A2p6	cell line	sgMsh2	69910904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	0	0	NA	exonic	Neurl4	nonsynonymous SNV	"Neurl4:NM_001291119:exon22:c.A3785G:p.Q1262R,Neurl4:NM_001013414:exon23:c.A3857G:p.Q1286R,Neurl4:NM_001291118:exon23:c.A3851G:p.Q1284R"	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	46	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9278322	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	113	0	0	NA	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999832	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	70551181	12A2p6	cell line	sgMsh2	70551181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	129	0	0	NA	exonic	Pld2	nonsynonymous SNV	"Pld2:NM_001361935:exon10:c.T913C:p.F305L,Pld2:NM_001302475:exon11:c.T1012C:p.F338L,Pld2:NM_008876:exon11:c.T1012C:p.F338L"	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	70681057	12A2p6	cell line	sgMsh2	70681057	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	54	0	0	NA	exonic	Camta2	frameshift deletion	"Camta2:NM_001190379:exon8:c.1340delC:p.P447Rfs*63,Camta2:NM_001364103:exon8:c.1532delC:p.P511Rfs*63,Camta2:NM_001190376:exon9:c.1412delC:p.P471Rfs*63,Camta2:NM_001190378:exon9:c.1412delC:p.P471Rfs*63,Camta2:NM_178116:exon9:c.1427delC:p.P476Rfs*63"	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4_p20	chr11	70688628	12A2p6	cell line	sgMsh2	70688628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	94	0	0	NA	exonic	Inca1	nonsynonymous SNV	"Inca1:NM_001252482:exon7:c.T674C:p.M225T,Inca1:NM_001252483:exon7:c.T674C:p.M225T,Inca1:NM_001252484:exon7:c.T674C:p.M225T,Inca1:NM_213729:exon7:c.T674C:p.M225T,Inca1:NM_001252485:exon8:c.T569C:p.M190T"	11qB3	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	CAT	nonsynonymous	ACTCCA	12	ACTCCAACTCCA	NA
M4_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.281	170	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999937	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	67	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	72874909	12A2p6	cell line	sgMsh2	72874909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	63	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon29:c.A4261G:p.I1421V	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9970032	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	73253066	12A2p6	cell line	sgMsh2	73253066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	161	0	0	NA	exonic	Trpv1	synonymous SNV	Trpv1:NM_001001445:exon13:c.T1827C:p.P609P	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999895	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	73291659	12A2p6	cell line	sgMsh2	73291659	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	283	0	0	NA	exonic	Trpv3	synonymous SNV	"Trpv3:NM_001371006:exon13:c.C1668A:p.A556A,Trpv3:NM_145099:exon13:c.C1668A:p.A556A"	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-08	CCC	synonymous	CTGGG	11	CTGGGCTGGGC	NA
M4_p20	chr11	73354283	12A2p6	cell line	sgMsh2	73354283	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	661	0	0	NA	exonic	Olfr20	frameshift deletion	Olfr20:NM_146923:exon2:c.529delT:p.F178Sfs*7	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr11	73710482	12A2p6	cell line	sgMsh2	73710482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	155	0	0	NA	exonic	Zfp735	nonsynonymous SNV	Zfp735:NM_001126489:exon4:c.A251G:p.N84S	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999851	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	73814764	12A2p6	cell line	sgMsh2	73814764	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	545	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T317G:p.V106G	11qB4	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr11	74929705	12A2p6	cell line	sgMsh2	74929705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	86	0	0	NA	exonic	Smg6	synonymous SNV	Smg6:NM_001002764:exon2:c.T801C:p.A267A	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992032	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	227	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	296	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.37E-09	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	81	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	76066765	12A2p6	cell line	sgMsh2	76066765	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	442	0	0	NA	exonic	Vps53	nonsynonymous SNV	Vps53:NM_026664:exon18:c.C1991A:p.T664K	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	29	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9790761	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	62	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	78251141	12A2p6	cell line	sgMsh2	78251141	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	exonic	Sdf2	nonsynonymous SNV	"Sdf2:NM_001359106:exon2:c.C301T:p.R101C,Sdf2:NM_009143:exon2:c.C301T:p.R101C"	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	154	0	0	NA	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999842	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	90	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9307443	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	132	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999439	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	80137029	12A2p6	cell line	sgMsh2	80137029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	190	0	0	NA	exonic	Tefm	nonsynonymous SNV	Tefm:NM_183275:exon4:c.T902C:p.L301P	11qB5	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999998	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	82444564	12A2p6	cell line	sgMsh2	82444564	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	39	0	0	NA	exonic	Tmem132e	nonsynonymous SNV	Tmem132e:NM_001304439:exon9:c.A2471G:p.Y824C	11qC	chr11-69590981-82929860	5	4	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9881399	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	84023286	12A2p6	cell line	sgMsh2	84023286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	92	0	0	NA	exonic	Synrg	synonymous SNV	Synrg:NM_194341:exon15:c.T2736C:p.L912L	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994362	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	340	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.35E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	84822438	12A2p6	cell line	sgMsh2	84822438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	45	0	0	NA	exonic	Dhrs11	nonsynonymous SNV	Dhrs11:NM_177564:exon4:c.T455C:p.M152T	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	84841568	12A2p6	cell line	sgMsh2	84841568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	132	0	0	NA	exonic	Ggnbp2	nonsynonymous SNV	"Ggnbp2:NM_001364114:exon7:c.A698C:p.E233A,Ggnbp2:NM_001364115:exon7:c.A698C:p.E233A,Ggnbp2:NM_153144:exon7:c.A698C:p.E233A,Ggnbp2:NM_001364111:exon8:c.A824C:p.E275A,Ggnbp2:NM_001364112:exon8:c.A824C:p.E275A"	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999439	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	84897560	12A2p6	cell line	sgMsh2	84897560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	43	0	0	NA	exonic	Myo19	nonsynonymous SNV	"Myo19:NM_001362893:exon10:c.A178G:p.T60A,Myo19:NM_025414:exon12:c.A997G:p.T333A"	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9905608	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	362	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.10E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	253	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	213	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	327	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.73E-09	CAA	synonymous	CCT	8	CCTCCTCC	NA
M4_p20	chr11	86289051	12A2p6	cell line	sgMsh2	86289051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	207	0	0	NA	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon18:c.T4070C:p.L1357P	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	110	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998003	CCA	synonymous	NA	NA	NA	NA
M4_p20	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	242	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9995107	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	63	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9948958	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	116	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998587	ACG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	38	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9131177	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	87914468	12A2p6	cell line	sgMsh2	87914468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	173	0	0	NA	exonic	Olfr464	nonsynonymous SNV	Olfr464:NM_146412:exon1:c.T437C:p.V146A	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999947	CAC	nonsynonymous	CCA	9	CCACCACCA	NA
M4_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	183	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	0.9999899	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	94297860	12A2p6	cell line	sgMsh2	94297860	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	155	0	0	NA	exonic	Luc7l3	nonsynonymous SNV	"Luc7l3:NM_001361573:exon7:c.T592A:p.F198I,Luc7l3:NM_001361574:exon7:c.T592A:p.F198I,Luc7l3:NM_001361575:exon7:c.T592A:p.F198I,Luc7l3:NM_026313:exon7:c.T592A:p.F198I"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	AAG	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	166	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999921	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	89	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993297	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	94503202	12A2p6	cell line	sgMsh2	94503202	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	69	0	0	NA	exonic	Mycbpap	frameshift deletion	Mycbpap:NM_170671:exon18:c.2621delC:p.P874Lfs*10	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	103	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	94650086	12A2p6	cell line	sgMsh2	94650086	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	110	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.G825T:p.M275I,Eme1:NM_177752:exon3:c.G825T:p.M275I"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998003	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	140	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999646	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	95578228	12A2p6	cell line	sgMsh2	95578228	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	63	0	0	NA	exonic	Ngfr	nonsynonymous SNV	Ngfr:NM_033217:exon3:c.C323T:p.A108V	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.459594154	2	0.8533381	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	138	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999603	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	96961460	12A2p6	cell line	sgMsh2	96961460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	75	0	0	NA	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon3:c.A634G:p.T212A,Sp2:NM_001363226:exon3:c.A619G:p.T207A,Sp2:NM_030220:exon3:c.A637G:p.T213A,Sp2:NM_001363225:exon4:c.A619G:p.T207A"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998498	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	97168894	12A2p6	cell line	sgMsh2	97168894	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	242	0	0	NA	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon14:c.C1738A:p.L580I	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	97187414	12A2p6	cell line	sgMsh2	97187414	A	C	SNV	Mutect2;Strelka2	2	0.429	8	0	0	NA	exonic	Kpnb1	nonsynonymous SNV	Kpnb1:NM_008379:exon2:c.T74G:p.L25R	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.000999377	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	97378654	12A2p6	cell line	sgMsh2	97378654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	237	0	0	NA	exonic	Socs7	nonsynonymous SNV	Socs7:NM_138657:exon6:c.A1504G:p.S502G	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	197	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999987	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	222	0	0	NA	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr11	98005299	12A2p6	cell line	sgMsh2	98005299	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	87	0	0	NA	exonic	Cacnb1	nonsynonymous SNV	"Cacnb1:NM_001159320:exon12:c.A1156C:p.I386L,Cacnb1:NM_001282978:exon12:c.A1138C:p.I380L,Cacnb1:NM_001159319:exon13:c.A1162C:p.I388L,Cacnb1:NM_001282977:exon13:c.A1297C:p.I433L,Cacnb1:NM_031173:exon13:c.A1297C:p.I433L,Cacnb1:NM_145121:exon13:c.A1162C:p.I388L"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992478	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	68	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9977524	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.407	33	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M4_p20	chr11	98397994	12A2p6	cell line	sgMsh2	98397994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	0	0	NA	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon3:c.C334T:p.L112F	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9990527	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999812	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	153	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999833	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr11	98892682	12A2p6	cell line	sgMsh2	98892682	A	G	SNV	Mutect2;MuSe;Vardict	3	0.235	22	0	0	NA	exonic	Wipf2	synonymous SNV	Wipf2:NM_197940:exon5:c.A933G:p.P311P	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9689818	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	98898812	12A2p6	cell line	sgMsh2	98898812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	135	0	0	NA	exonic	Wipf2	nonsynonymous SNV	Wipf2:NM_197940:exon7:c.A1262G:p.Y421C	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999528	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	100011610	12A2p6	cell line	sgMsh2	100011610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	258	0	0	NA	exonic	Krt33a	synonymous SNV	Krt33a:NM_027983:exon7:c.T1203C:p.T401T	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.01E-08	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr11	100696986	12A2p6	cell line	sgMsh2	100696986	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	65	0	0	NA	exonic	Dhx58	nonsynonymous SNV	Dhx58:NM_030150:exon11:c.C1744T:p.P582S	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9973289	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	147	0	0	NA	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	101246546	12A2p6	cell line	sgMsh2	101246548	TGC	-	Deletion	Strelka2;Vardict	2	0.3	20	0	0	NA	exonic	Ramp2	nonframeshift deletion	Ramp2:NM_019444:exon1:c.95_97del:p.L39del	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TTG	inframe	TGC	23	TGCTGCTGCTGCTGCTGCTGCTG	-3
M4_p20	chr11	101325361	12A2p6	cell line	sgMsh2	101325361	A	G	SNV	Mutect2;Vardict	2	0.053	137	0	0	NA	exonic	Aoc2	nonsynonymous SNV	Aoc2:NM_178932:exon1:c.A269G:p.N90S	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.289982026	3	0.9999816	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	129	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	39	0	0	NA	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9881399	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	102480427	12A2p6	cell line	sgMsh2	102480427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	154	0	0	NA	exonic	Gpatch8	nonsynonymous SNV	Gpatch8:NM_001159492:exon8:c.G2284T:p.G762C	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999842	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	102481373	12A2p6	cell line	sgMsh2	102481373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	62	0	0	NA	exonic	Gpatch8	synonymous SNV	Gpatch8:NM_001159492:exon8:c.T1338C:p.S446S	11qD	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	90	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993673	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	103	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	CCC	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	54	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9949735	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995257	TTC	synonymous	NA	NA	NA	NA
M4_p20	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	90	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993673	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	153	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	271	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.95E-08	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	106567953	12A2p6	cell line	sgMsh2	106567953	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	0	0	NA	exonic	Tex2	nonsynonymous SNV	Tex2:NM_198292:exon2:c.T650A:p.V217D	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9905608	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	106781891	12A2p6	cell line	sgMsh2	106781891	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	416	0	0	NA	exonic	Ddx5	nonsynonymous SNV	"Ddx5:NM_007840:exon13:c.C1807T:p.P603S,Ddx5:NM_001355676:exon14:c.C1807T:p.P603S,Ddx5:NM_001355677:exon14:c.C1807T:p.P603S"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	85	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9979824	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	107056083	12A2p6	cell line	sgMsh2	107056083	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	263	0	0	NA	exonic	Bptf	synonymous SNV	"Bptf:NM_001359590:exon20:c.A6537G:p.V2179V,Bptf:NM_176850:exon20:c.A6537G:p.V2179V"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.03E-08	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	119	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998812	ATA	synonymous	ATAA	8	ATAAATAA	NA
M4_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	152	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999823	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	109579702	12A2p6	cell line	sgMsh2	109579702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	124	0	0	NA	exonic	Wipi1	nonsynonymous SNV	Wipi1:NM_145940:exon9:c.T890C:p.M297T	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999911	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	110113236	12A2p6	cell line	sgMsh2	110113236	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	341	0	0	NA	exonic	Abca9	nonsynonymous SNV	Abca9:NM_147220:exon31:c.A4000C:p.T1334P	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.33E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.231	344	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.27E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	113821385	12A2p6	cell line	sgMsh2	113821385	G	-	Deletion	Mutect2;Vardict	2	0.222	95	0	0	NA	exonic	Sdk2	frameshift deletion	Sdk2:NM_172800:exon36:c.4955delC:p.P1652Lfs*27	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4_p20	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	84	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991058	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr11	114696809	12A2p6	cell line	sgMsh2	114696809	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	exonic	Ttyh2	nonsynonymous SNV	Ttyh2:NM_053273:exon4:c.G635T:p.R212M	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.009994125	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	499	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	115587966	12A2p6	cell line	sgMsh2	115587966	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	120	0	0	NA	exonic	Gga3	synonymous SNV	"Gga3:NM_001252067:exon11:c.A984G:p.S328S,Gga3:NM_173048:exon12:c.A1218G:p.S406S"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998878	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	131	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999405	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	115886663	12A2p6	cell line	sgMsh2	115886663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	69	0	0	NA	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon47:c.C7333T:p.H2445Y	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	GCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	47	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9924913	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	115932895	12A2p6	cell line	sgMsh2	115932895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	39	0	0	NA	exonic	Recql5	synonymous SNV	Recql5:NM_130454:exon1:c.T24C:p.T8T	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9881399	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	148	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9884807	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	71	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	116135275	12A2p6	cell line	sgMsh2	116135275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	78	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A298G:p.T100A	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9987364	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	44	0	0	NA	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9910852	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	145	0	0	NA	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	116685182	12A2p6	cell line	sgMsh2	116685182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	72	0	0	NA	exonic	St6galnac2	nonsynonymous SNV	St6galnac2:NM_009180:exon4:c.A442G:p.I148V	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9937874	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	61	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	117721220	12A2p6	cell line	sgMsh2	117721220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	98	0	0	NA	exonic	Tnrc6c	nonsynonymous SNV	Tnrc6c:NM_198022:exon5:c.A683G:p.N228S	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996011	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	113	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999832	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	118066408	12A2p6	cell line	sgMsh2	118066408	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	116	0	0	NA	exonic	Dnah17	nonsynonymous SNV	Dnah17:NM_001167746:exon54:c.C8342T:p.A2781V	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.300924744	3	0.99974	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	118333525	12A2p6	cell line	sgMsh2	118333525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	119	0	0	NA	exonic	Cep295nl	synonymous SNV	Cep295nl:NM_021440:exon3:c.G492A:p.K164K	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998812	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	41	0	0	NA	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9894186	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	119156661	12A2p6	cell line	sgMsh2	119156661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	27	0	0	NA	exonic	Tbc1d16	nonsynonymous SNV	"Tbc1d16:NM_001347625:exon6:c.G1233T:p.E411D,Tbc1d16:NM_172443:exon6:c.G1236T:p.E412D"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9765765	CCT	nonsynonymous	CTC	10	CTCCTCCTCC	NA
M4_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	72	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9982147	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.185	20	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9653132	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr11	120110238	12A2p6	cell line	sgMsh2	120110238	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	74	0	0	NA	exonic	Slc38a10	synonymous SNV	"Slc38a10:NM_001361697:exon12:c.G1509T:p.V503V,Slc38a10:NM_001361698:exon12:c.G1491T:p.V497V,Slc38a10:NM_001164798:exon13:c.G1755T:p.V585V,Slc38a10:NM_001164799:exon13:c.G1755T:p.V585V,Slc38a10:NM_001164800:exon13:c.G1755T:p.V585V,Slc38a10:NM_001361696:exon13:c.G1755T:p.V585V,Slc38a10:NM_001361699:exon13:c.G1080T:p.V360V,Slc38a10:NM_024249:exon13:c.G1755T:p.V585V"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	GCA	synonymous	NA	NA	NA	NA
M4_p20	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	289	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.54E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	48	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9929093	TAC	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	250	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	120346789	12A2p6	cell line	sgMsh2	120346789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	318	0	0	NA	exonic	Actg1	nonsynonymous SNV	"Actg1:NM_009609:exon5:c.A832G:p.T278A,Actg1:NM_001313923:exon6:c.A466G:p.T156A"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.23E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	136	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999554	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr11	120458223	12A2p6	cell line	sgMsh2	120458223	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.214	19	0	0	NA	exonic	Ccdc137	synonymous SNV	Ccdc137:NM_152807:exon1:c.C79A:p.R27R	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9633235	GCG	synonymous	GGC	9	GGCGGCGGC	NA
M4_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	67	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9976192	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	120494500	12A2p6	cell line	sgMsh2	120494500	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	199	0	0	NA	exonic	Slc25a10	nonsynonymous SNV	Slc25a10:NM_013770:exon2:c.G114T:p.E38D	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	102	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996833	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	120647724	12A2p6	cell line	sgMsh2	120647724	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	47	0	0	NA	exonic	Myadml2	nonsynonymous SNV	"Myadml2:NM_001204820:exon1:c.C284T:p.A95V,Myadml2:NM_026751:exon1:c.C284T:p.A95V"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	178	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999996	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr11	121591223	12A2p6	cell line	sgMsh2	121591223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	276	0	0	NA	exonic	Tbcd	nonsynonymous SNV	Tbcd:NM_029878:exon25:c.C2152A:p.L718I	11qE2	chr11-83350706-121956668	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.48E-08	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	4201333	12A2p6	cell line	sgMsh2	4201333	A	T	SNV	Mutect2;Vardict	2	0.131	34	0	0	NA	exonic	Adcy3	nonsynonymous SNV	"Adcy3:NM_138305:exon10:c.A1954T:p.I652F,Adcy3:NM_001159536:exon11:c.A1954T:p.I652F,Adcy3:NM_001159537:exon11:c.A1954T:p.I652F"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	1	0.7313199	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	61	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	1	0.7802876	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	160	0	0	NA	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.377523769	3	0.9957166	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	4697179	12A2p6	cell line	sgMsh2	4697179	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	170	0	0	NA	exonic	Itsn2	synonymous SNV	"Itsn2:NM_011365:exon29:c.T3498C:p.P1166P,Itsn2:NM_001198968:exon30:c.T3579C:p.P1193P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.350166974	3	0.9997814	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr12	4713050	12A2p6	cell line	sgMsh2	4713050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	155	0	0	NA	exonic	Itsn2	synonymous SNV	"Itsn2:NM_011365:exon39:c.T4830C:p.G1610G,Itsn2:NM_001198968:exon40:c.T4911C:p.G1637G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9314806	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	233	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	2	0.9999998	GTT	synonymous	TTA	8	TTATTATT	NA
M4_p20	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	171	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999941	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M4_p20	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	147	0	0	NA	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.999135	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	176	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	70	0	0	NA	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4_p20	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	271	0	0	NA	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.95E-08	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr12	10394644	12A2p6	cell line	sgMsh2	10394644	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	150	0	0	NA	exonic	Rdh14	nonsynonymous SNV	Rdh14:NM_023697:exon2:c.G494A:p.G165D	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	1	0.617763	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	144	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999719	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	504	0	0	NA	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.9999997	TTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	336	0	0	NA	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.43E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	30103159	12A2p6	cell line	sgMsh2	30103159	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	70	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon8:c.C1195T:p.L399L	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9979968	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	229	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr12	31488277	12A2p6	cell line	sgMsh2	31488277	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	155	0	0	NA	exonic	Cbll1	stopgain	"Cbll1:NM_001253847:exon6:c.C478T:p.R160X,Cbll1:NM_001253848:exon6:c.C466T:p.R156X,Cbll1:NM_134048:exon6:c.C475T:p.R159X"	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	248	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	2	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	547	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	31709074	12A2p6	cell line	sgMsh2	31709074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	392	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A937G:p.M313V	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	367	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.9946923	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	38857094	12A2p6	cell line	sgMsh2	38857094	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	267	0	0	NA	exonic	Etv1	nonsynonymous SNV	"Etv1:NM_001163154:exon8:c.T974G:p.L325R,Etv1:NM_001347379:exon10:c.T1040G:p.L347R,Etv1:NM_007960:exon11:c.T1094G:p.L365R"	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.43E-08	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	275	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.541664539	2	0.999999	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	41453999	12A2p6	cell line	sgMsh2	41453999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	289	0	0	NA	exonic	Lrrn3	synonymous SNV	"Lrrn3:NM_001271709:exon2:c.A318G:p.S106S,Lrrn3:NM_010733:exon2:c.A318G:p.S106S,Lrrn3:NM_001271708:exon3:c.A318G:p.S106S"	12qB1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.9999959	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	241	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	46700302	12A2p6	cell line	sgMsh2	46700302	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	210	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon4:c.A1119C:p.G373G,Nova1:NM_001364635:exon4:c.A1116C:p.G372G,Nova1:NM_001364638:exon5:c.A753C:p.G251G,Nova1:NM_021361:exon5:c.A1191C:p.G397G,Nova1:NM_001364636:exon6:c.A825C:p.G275G,Nova1:NM_001364637:exon7:c.A825C:p.G275G"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9955351	ATC	synonymous	NA	NA	NA	NA
M4_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	211	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.996975	CTG	synonymous	ACCT	8	ACCTACCT	NA
M4_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	75	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.5019711	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	52023659	12A2p6	cell line	sgMsh2	52023659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	359	0	0	NA	exonic	Gpr33	nonsynonymous SNV	Gpr33:NM_008159:exon2:c.A596G:p.Q199R	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9991447	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	192	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M4_p20	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	380	0	0	NA	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M4_p20	chr12	56328711	12A2p6	cell line	sgMsh2	56328711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	268	0	0	NA	exonic	Mbip	nonsynonymous SNV	Mbip:NM_145442:exon9:c.C1010T:p.A337V	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.53619318	2	0.9999969	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	58268086	12A2p6	cell line	sgMsh2	58268086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	88	0	0	NA	exonic	Clec14a	nonsynonymous SNV	Clec14a:NM_025809:exon1:c.G749A:p.R250K	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992899	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	60	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	283	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.705805308	2	0.9998109	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr12	64957294	12A2p6	cell line	sgMsh2	64957294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	238	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T444C:p.G148G	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	348	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	2	1.87E-08	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	428	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	2	1.00E-09	CAA	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Vardict	2	0.087	186	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.476008231	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr12	65158401	12A2p6	cell line	sgMsh2	65158401	T	-	Deletion	Mutect2;Vardict	2	0.149	164	0	0	NA	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon3:c.996delA:p.K332Nfs*10	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.815232487	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	219	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	2	0.9931317	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	184	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999972	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Vardict	2	0.104	472	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4_p20	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.147	70	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.8527625	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	275	0	0	NA	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	231	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	2	0.9996031	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr12	72481457	12A2p6	cell line	sgMsh2	72481457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	127	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon20:c.A2529C:p.K843N,Lrrc9:NM_030070:exon20:c.A2532C:p.K844N"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9993194	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	308	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9948955	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M4_p20	chr12	73170595	12A2p6	cell line	sgMsh2	73170595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	349	0	0	NA	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon3:c.T244C:p.Y82H	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	2	1.03E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	350	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.744104821	2	0.9988401	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	264	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.87E-08	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	75878386	12A2p6	cell line	sgMsh2	75878386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	0	0	NA	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon3:c.G132A:p.Q44Q	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996833	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	496	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.9270337	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Vardict	2	0.084	157	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.459594154	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	118	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9818383	CTC	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr12	76782889	12A2p6	cell line	sgMsh2	76782889	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	388	0	0	NA	exonic	Churc1	nonsynonymous SNV	Churc1:NM_206534:exon4:c.T323C:p.M108T	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	78504694	12A2p6	cell line	sgMsh2	78504694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	221	0	0	NA	exonic	Gphn	synonymous SNV	"Gphn:NM_172952:exon8:c.A807G:p.E269E,Gphn:NM_145965:exon9:c.A915G:p.E305E"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.672977154	2	0.9998118	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr12	78819316	12A2p6	cell line	sgMsh2	78819316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	111	0	0	NA	exonic	Mpp5	nonsynonymous SNV	Mpp5:NM_019579:exon7:c.A914G:p.N305S	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998115	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	236	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	166	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999821	AGA	synonymous	NA	NA	NA	NA
M4_p20	chr12	79287650	12A2p6	cell line	sgMsh2	79287650	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.124	53	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon5:c.T593G:p.L198R	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.5770605	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	439	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9999724	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	342	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.492422308	2	0.9994669	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	318	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9995189	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	439	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	85030881	12A2p6	cell line	sgMsh2	85030881	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	126	0	0	NA	exonic	Ylpm1	nonsynonymous SNV	Ylpm1:NM_178363:exon5:c.T4379C:p.M1460T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.459594154	2	0.8473562	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	321	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	2	0.9997522	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	85296421	12A2p6	cell line	sgMsh2	85296421	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	228	0	0	NA	exonic	Zc2hc1c	nonsynonymous SNV	Zc2hc1c:NM_172414:exon3:c.C1331A:p.P444H	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.7705442	CCT	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr12	85322051	12A2p6	cell line	sgMsh2	85322051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	309	0	0	NA	exonic	Nek9	nonsynonymous SNV	Nek9:NM_145138:exon9:c.A967G:p.N323D	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.640149	2	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	87	0	0	NA	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	80	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9276346	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	115	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	83	0	0	NA	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9990527	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	291	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.7230744	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	150	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	340	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.35E-09	TGA	synonymous	NA	NA	NA	NA
M4_p20	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	130	0	0	NA	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.8362885	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	75	0	0	NA	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	1	0.7426044	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	147	0	0	NA	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.492422308	2	0.9866789	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	137	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	0.9984078	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.199	303	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M4_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Vardict	2	0.087	98	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.476008231	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M4_p20	chr12	102389976	12A2p6	cell line	sgMsh2	102389976	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	165	0	0	NA	exonic	Rin3	synonymous SNV	"Rin3:NM_001161365:exon10:c.C2535T:p.D845D,Rin3:NM_177620:exon10:c.C2775T:p.D925D"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999916	ACG	synonymous	NA	NA	NA	NA
M4_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	164	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	TTC	synonymous	NA	NA	NA	NA
M4_p20	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	278	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr12	103235687	12A2p6	cell line	sgMsh2	103235687	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	80	0	0	NA	exonic	Prima1	nonsynonymous SNV	Prima1:NM_133364:exon3:c.A128C:p.K43T	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	133	0	0	NA	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9111865	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr12	103763803	12A2p6	cell line	sgMsh2	103763803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	567	0	0	NA	exonic	Serpina1d	nonsynonymous SNV	Serpina1d:NM_009246:exon5:c.A1119C:p.Q373H	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	103950807	12A2p6	cell line	sgMsh2	103950807	A	G	SNV	Mutect2;Vardict	2	0.047	323	0	0	NA	exonic	Serpina1e	nonsynonymous SNV	Serpina1e:NM_009247:exon2:c.T602C:p.V201A	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.257153872	3	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.203	157	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M4_p20	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	139	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.9836059	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	148	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.738633462	2	0.8661196	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	111103704	12A2p6	cell line	sgMsh2	111103704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	125	0	0	NA	exonic	Rcor1	nonsynonymous SNV	Rcor1:NM_198023:exon8:c.T934C:p.F312L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999159	GTT	nonsynonymous	TTTC	9	TTTCTTTCT	NA
M4_p20	chr12	111540548	12A2p6	cell line	sgMsh2	111540548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	241	0	0	NA	exonic	Eif5	nonsynonymous SNV	"Eif5:NM_173363:exon6:c.A415G:p.T139A,Eif5:NM_178041:exon6:c.A415G:p.T139A"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9999751	TAC	nonsynonymous	CATT	9	CATTCATTC	NA
M4_p20	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	143	0	0	NA	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.9893244	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	96	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9818873	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	111	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	2	0.8634797	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	112909185	12A2p6	cell line	sgMsh2	112909185	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	56	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon26:c.A3448G:p.T1150A	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	1	0.5610914	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	161	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	2	0.9891573	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	139	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.6530001	AGT	synonymous	NA	NA	NA	NA
M4_p20	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	351	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.618263564	2	1.66E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	328	0	0	NA	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9996466	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	158	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.437708718	3	0.5499693	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M4_p20	chr12	117577641	12A2p6	cell line	sgMsh2	117577641	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	182	0	0	NA	exonic	Rapgef5	synonymous SNV	"Rapgef5:NM_001373989:exon3:c.C288A:p.S96S,Rapgef5:NM_175930:exon5:c.C93A:p.S31S"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999969	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	81	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.8144569	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Vardict	2	0.112	264	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4_p20	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	143	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999702	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	524	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	1.01E-09	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	118041025	12A2p6	cell line	sgMsh2	118041025	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	200	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon40:c.A6560C:p.K2187T	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999989	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	118901376	12A2p6	cell line	sgMsh2	118901376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	810	0	0	NA	exonic	Abcb5	nonsynonymous SNV	Abcb5:NM_029961:exon20:c.A2405G:p.D802G	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.58543541	2	1	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	301	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	2	7.22E-09	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	8570039	12A2p6	cell line	sgMsh2	8570039	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	71	0	0	NA	exonic	Adarb2	nonsynonymous SNV	"Adarb2:NM_001289530:exon3:c.A560C:p.K187T,Adarb2:NM_052977:exon3:c.A560C:p.K187T"	13qA1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	9151149	12A2p6	cell line	sgMsh2	9151149	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	341	0	0	NA	exonic	Larp4b	synonymous SNV	"Larp4b:NM_001311117:exon11:c.G1056A:p.Q352Q,Larp4b:NM_172585:exon11:c.G1056A:p.Q352Q"	13qA1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.33E-09	AGC	synonymous	CAG	9	CAGCAGCAG	NA
M4_p20	chr13	11738141	12A2p6	cell line	sgMsh2	11738141	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	140	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon37:c.5293delT:p.S1765Pfs*5	13qA1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.217	269	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.17E-08	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	20914979	12A2p6	cell line	sgMsh2	20914979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	416	0	0	NA	exonic	Aoah	nonsynonymous SNV	Aoah:NM_012054:exon10:c.T727C:p.Y243H	13qA2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	21722370	12A2p6	cell line	sgMsh2	21722370	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	261	0	0	NA	exonic	H2bc14	synonymous SNV	H2bc14:NM_178200:exon1:c.G273A:p.T91T	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.39E-08	CGT	synonymous	NA	NA	NA	NA
M4_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	424	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GGC	synonymous	NA	NA	NA	NA
M4_p20	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	266	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.57E-08	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	22354916	12A2p6	cell line	sgMsh2	22354916	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	392	0	0	NA	exonic	Vmn1r198	nonsynonymous SNV	Vmn1r198:NM_134220:exon1:c.A571C:p.I191L	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	22383470	12A2p6	cell line	sgMsh2	22383470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	463	0	0	NA	exonic	Vmn1r199	synonymous SNV	Vmn1r199:NM_134213:exon1:c.T933C:p.P311P	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr13	22883342	12A2p6	cell line	sgMsh2	22883342	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	0	0	NA	exonic	Vmn1r212	nonsynonymous SNV	Vmn1r212:NM_134241:exon1:c.C820A:p.L274I	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	23011606	12A2p6	cell line	sgMsh2	23011606	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	611	0	0	NA	exonic	Vmn1r213	nonsynonymous SNV	Vmn1r213:NM_134215:exon1:c.T358G:p.W120G	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	428	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	23706914	12A2p6	cell line	sgMsh2	23706914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	29	0	0	NA	exonic	Hfe	nonsynonymous SNV	"Hfe:NM_001347493:exon2:c.G241A:p.A81T,Hfe:NM_010424:exon3:c.G505A:p.A169T"	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9790761	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	139	0	0	NA	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999625	GCA	synonymous	NA	NA	NA	NA
M4_p20	chr13	24981025	12A2p6	cell line	sgMsh2	24981025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	153	0	0	NA	exonic	Gpld1	nonsynonymous SNV	Gpld1:NM_008156:exon19:c.T1747C:p.S583P	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999833	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	27199458	12A2p6	cell line	sgMsh2	27199458	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	185	0	0	NA	exonic	Prl3c1	frameshift deletion	"Prl3c1:NM_001163218:exon2:c.106delA:p.M38Cfs*4,Prl3c1:NM_013766:exon2:c.166delA:p.M58Cfs*4"	13qA3.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	296	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.37E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	34044506	12A2p6	cell line	sgMsh2	34044506	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	226	0	0	NA	exonic	Bphl	nonsynonymous SNV	Bphl:NM_026512:exon2:c.C190A:p.L64I	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	21	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9671975	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	34910543	12A2p6	cell line	sgMsh2	34910543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	169	0	0	NA	exonic	Fam217a	nonsynonymous SNV	Fam217a:NM_027967:exon8:c.A1232G:p.K411R	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9916373	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	102	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9768805	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	42156838	12A2p6	cell line	sgMsh2	42156838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	189	0	0	NA	exonic	Hivep1	synonymous SNV	Hivep1:NM_007772:exon4:c.T2553C:p.P851P	13qA4	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999979	CTC	synonymous	CCTCCC	12	CCTCCCCCTCCC	NA
M4_p20	chr13	42158323	12A2p6	cell line	sgMsh2	42158323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	133	0	0	NA	exonic	Hivep1	nonsynonymous SNV	Hivep1:NM_007772:exon4:c.G4038T:p.R1346S	13qA4	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999947	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	228	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	45567492	12A2p6	cell line	sgMsh2	45567492	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	131	0	0	NA	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon6:c.G926T:p.R309M,Atxn1:NM_001199305:exon7:c.G926T:p.R309M,Atxn1:NM_009124:exon7:c.G926T:p.R309M"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999405	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	45567607	12A2p6	cell line	sgMsh2	45567607	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	99	0	0	NA	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon6:c.G811T:p.D271Y,Atxn1:NM_001199305:exon7:c.G811T:p.D271Y,Atxn1:NM_009124:exon7:c.G811T:p.D271Y"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.32281018	3	0.9963015	TCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	47098300	12A2p6	cell line	sgMsh2	47098300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	200	0	0	NA	exonic	Dek	nonsynonymous SNV	Dek:NM_025900:exon7:c.A629G:p.K210R	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	CTT	nonsynonymous	GTTCC	10	GTTCCGTTCC	NA
M4_p20	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	77	0	0	NA	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9986615	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr13	49090904	12A2p6	cell line	sgMsh2	49090904	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	48	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon7:c.G1455C:p.K485N,Wnk2:NM_001290313:exon7:c.G1455C:p.K485N,Wnk2:NM_029361:exon7:c.G1455C:p.K485N"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	1	0.6663219	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	49101083	12A2p6	cell line	sgMsh2	49101083	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.286	55	0	0	NA	exonic	Wnk2	frameshift insertion	"Wnk2:NM_001290311:exon4:c.954dupC:p.I319Hfs*4,Wnk2:NM_001290313:exon4:c.954dupC:p.I319Hfs*4,Wnk2:NM_029361:exon4:c.954dupC:p.I319Hfs*4"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATG	frameshift	G	5	GGGGG	1
M4_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	252	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	66	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9974782	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	79	0	0	NA	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9988072	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M4_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	92	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M4_p20	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	213	0	0	NA	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999995	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	167	0	0	NA	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999925	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	55450302	12A2p6	cell line	sgMsh2	55450302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	264	0	0	NA	exonic	Grk6	synonymous SNV	"Grk6:NM_001038018:exon3:c.T186C:p.I62I,Grk6:NM_001112711:exon3:c.T186C:p.I62I,Grk6:NM_001286063:exon3:c.T90C:p.I30I,Grk6:NM_001286064:exon3:c.T186C:p.I62I,Grk6:NM_001286065:exon3:c.T186C:p.I62I,Grk6:NM_011938:exon3:c.T186C:p.I62I,Grk6:NM_001377076:exon4:c.T171C:p.I57I"	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.87E-08	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr13	55595590	12A2p6	cell line	sgMsh2	55595590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	57	0	0	NA	exonic	Tmed9	synonymous SNV	Tmed9:NM_026211:exon4:c.C534T:p.I178I	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9957689	TCC	synonymous	NA	NA	NA	NA
M4_p20	chr13	56631281	12A2p6	cell line	sgMsh2	56631281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	169	0	0	NA	exonic	Tgfbi	nonsynonymous SNV	Tgfbi:NM_009369:exon10:c.T1316C:p.M439T	13qB1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999934	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	59718309	12A2p6	cell line	sgMsh2	59718309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	75	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3270C:p.K1090N	13qB2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998498	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	60761184	12A2p6	cell line	sgMsh2	60761184	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	82	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon26:c.G3610A:p.E1204K,Dapk1:NM_029653:exon26:c.G3610A:p.E1204K,Dapk1:NM_134062:exon26:c.G3610A:p.E1204K"	13qB2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9988774	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	285	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	9.24E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	65035762	12A2p6	cell line	sgMsh2	65035762	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	273	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1117G:p.K373E	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.75E-08	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	65037091	12A2p6	cell line	sgMsh2	65037091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	123	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A2446G:p.R816G	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	66908064	12A2p6	cell line	sgMsh2	66908064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	227	0	0	NA	exonic	Gm10767	synonymous SNV	Gm10767:NM_001177750:exon3:c.T120C:p.V40V	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr13	67181907	12A2p6	cell line	sgMsh2	67181907	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.211	313	0	0	NA	exonic	Rsl1	nonsynonymous SNV	Rsl1:NM_001013769:exon4:c.C418A:p.L140I	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.64E-09	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	152	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAG	frameshift	NA	NA	NA	-1
M4_p20	chr13	67546686	12A2p6	cell line	sgMsh2	67546686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	524	0	0	NA	exonic	Zfp748	synonymous SNV	Zfp748:NM_001035231:exon2:c.T72C:p.P24P	13qB3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	113	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999832	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	72630938	12A2p6	cell line	sgMsh2	72630938	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	103	0	0	NA	exonic	Irx2	nonsynonymous SNV	Irx2:NM_010574:exon2:c.A620G:p.K207R	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999701	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	46	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.992049	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr13	74668004	12A2p6	cell line	sgMsh2	74668004	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	336	0	0	NA	exonic	Erap1	stopgain	Erap1:NM_030711:exon11:c.G1538A:p.W513X	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.43E-09	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	244	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	142	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999685	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	127	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	89725447	12A2p6	cell line	sgMsh2	89725447	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	348	0	0	NA	exonic	Vcan	nonsynonymous SNV	"Vcan:NM_001081249:exon3:c.A287C:p.D96A,Vcan:NM_001134474:exon3:c.A287C:p.D96A,Vcan:NM_001134475:exon3:c.A287C:p.D96A,Vcan:NM_019389:exon3:c.A287C:p.D96A,Vcan:NM_172955:exon3:c.A287C:p.D96A"	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.22E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	252	0	0	NA	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr13	92575439	12A2p6	cell line	sgMsh2	92575439	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	162	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A528T:p.K176N	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999901	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	92777103	12A2p6	cell line	sgMsh2	92777103	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	155	0	0	NA	exonic	Thbs4	nonsynonymous SNV	Thbs4:NM_011582:exon3:c.G308A:p.R103H	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	84	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991058	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	100299320	12A2p6	cell line	sgMsh2	100299320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	450	0	0	NA	exonic	Naip6;Naip7	synonymous SNV	"Naip6:NM_010871:exon9:c.A2694G:p.V898V,Naip7:NM_021545:exon10:c.A2694G:p.V898V"	13qD1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.656563077	2	1.25E-09	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr13	104802182	12A2p6	cell line	sgMsh2	104802182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	16	0	0	NA	exonic	Cwc27	nonsynonymous SNV	"Cwc27:NM_001360094:exon7:c.T619C:p.F207L,Cwc27:NM_026072:exon7:c.T619C:p.F207L"	13qD1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9566587	AAA	nonsynonymous	AAAG	8	AAAGAAAG	NA
M4_p20	chr13	106889392	12A2p6	cell line	sgMsh2	106889392	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	278	0	0	NA	exonic	Ipo11	nonsynonymous SNV	"Ipo11:NM_001360897:exon12:c.G1189A:p.G397R,Ipo11:NM_029665:exon12:c.G1189A:p.G397R"	13qD2.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.33E-08	CCT	nonsynonymous	CTC	8	CTCCTCCT	NA
M4_p20	chr13	108386851	12A2p6	cell line	sgMsh2	108386851	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	131	0	0	NA	exonic	Depdc1b	nonsynonymous SNV	Depdc1b:NM_178683:exon10:c.C1259A:p.A420D	13qD2.1	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999405	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	112911024	12A2p6	cell line	sgMsh2	112911024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	296	0	0	NA	exonic	Mtrex	synonymous SNV	Mtrex:NM_028151:exon8:c.A786G:p.V262V	13qD2.2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.37E-09	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr13	114849343	12A2p6	cell line	sgMsh2	114849343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	402	0	0	NA	exonic	Itga2	synonymous SNV	Itga2:NM_008396:exon24:c.T2895C:p.G965G	13qD2.2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	3.50E-09	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr13	114869213	12A2p6	cell line	sgMsh2	114869213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	377	0	0	NA	exonic	Itga2	nonsynonymous SNV	Itga2:NM_008396:exon12:c.A1430G:p.Q477R	13qD2.2	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.04E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	212	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	134	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.99995	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	3072092	12A2p6	cell line	sgMsh2	3072092	A	G	SNV	Mutect2;Vardict	2	0.135	232	0	0	NA	exonic	Gm2897	nonsynonymous SNV	Gm2897:NM_001177715:exon6:c.A337G:p.R113G	14qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	7818260	12A2p6	cell line	sgMsh2	7818260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	108	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon1:c.A109G:p.I37V,Flnb:NM_134080:exon1:c.A109G:p.I37V"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	177	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999958	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	51	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9940294	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr14	12465912	12A2p6	cell line	sgMsh2	12465912	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	157	0	0	NA	exonic	Cadps	synonymous SNV	"Cadps:NM_001359920:exon20:c.C2949A:p.S983S,Cadps:NM_012061:exon20:c.C2997A:p.S999S,Cadps:NM_001042617:exon22:c.C2979A:p.S993S,Cadps:NM_001359919:exon22:c.C2967A:p.S989S,Cadps:NM_001359921:exon22:c.C3036A:p.S1012S"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999867	TGG	synonymous	NA	NA	NA	NA
M4_p20	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.114	97	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	0.9836503	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	98	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7548571-19566630	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	119	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998812	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	104	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	0.9895426	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	66	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9974782	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	204	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999991	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	183	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	0.9999899	GAA	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	160	0	0	NA	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999888	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	70	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M4_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992478	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	30607639	12A2p6	cell line	sgMsh2	30607639	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	145	0	0	NA	exonic	Prkcd	synonymous SNV	"Prkcd:NM_001310682:exon3:c.G345A:p.L115L,Prkcd:NM_011103:exon4:c.G345A:p.L115L"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999735	TCA	synonymous	NA	NA	NA	NA
M4_p20	chr14	30689749	12A2p6	cell line	sgMsh2	30689749	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	215	0	0	NA	exonic	Rft1	nonsynonymous SNV	Rft1:NM_177815:exon12:c.T1253C:p.L418S	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	88	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.634677641	2	0.9609434	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	103	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	CAA	synonymous	NA	NA	NA	NA
M4_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.375	274	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	137	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999579	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	31256261	12A2p6	cell line	sgMsh2	31256261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	0	0	NA	exonic	Bap1	nonsynonymous SNV	Bap1:NM_027088:exon11:c.T1082C:p.L361P	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	129	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr14	32158169	12A2p6	cell line	sgMsh2	32158169	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	199	0	0	NA	exonic	Msmb	synonymous SNV	Msmb:NM_020597:exon4:c.C315A:p.T105T	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.996285	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	122	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999001	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	103	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999701	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.556	25	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4_p20	chr14	34414822	12A2p6	cell line	sgMsh2	34414822	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	237	0	0	NA	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon12:c.C1411T:p.R471C	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	144	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999719	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	60	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-41183403	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9964389	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	44103024	12A2p6	cell line	sgMsh2	44103024	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	548	0	0	NA	exonic	Ear12;Ear2;Ear3	nonsynonymous SNV	"Ear12:NM_001012766:exon1:c.A138C:p.Q46H,Ear3:NM_017388:exon1:c.A138C:p.Q46H,Ear2:NM_007895:exon2:c.A138C:p.Q46H"	14qC1	chr14-41348326-44504568	6.14413088	5.14413088	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	AAT	nonsynonymous	AATGT	10	AATGTAATGT	NA
M4_p20	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	248	0	0	NA	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	143	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9995394	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr14	46814301	12A2p6	cell line	sgMsh2	46814301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	175	0	0	NA	exonic	Gmfb	synonymous SNV	Gmfb:NM_022023:exon6:c.G300A:p.Q100Q	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999953	GCT	synonymous	CTG	8	CTGCTGCT	NA
M4_p20	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	93	0	0	NA	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9988289	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	47416452	12A2p6	cell line	sgMsh2	47416452	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	212	0	0	NA	exonic	Dlgap5	nonsynonymous SNV	Dlgap5:NM_144553:exon2:c.A119G:p.E40G	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	96	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.763	59	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	3	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M4_p20	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	183	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	125	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999159	TAA	synonymous	NA	NA	NA	NA
M4_p20	chr14	50362621	12A2p6	cell line	sgMsh2	50362621	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	82	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.C2063T:p.A688V	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9989965	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	274	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.65E-08	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	50893207	12A2p6	cell line	sgMsh2	50893207	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.142	63	0	0	NA	exonic	Klhl33	nonsynonymous SNV	"Klhl33:NM_001166651:exon1:c.C49A:p.R17S,Klhl33:NM_001370764:exon2:c.C829A:p.R277S"	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	1	0.7751563	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	45	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	73	0	0	NA	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	119	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998812	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	136	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999554	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M4_p20	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	52	0	0	NA	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr14	52287337	12A2p6	cell line	sgMsh2	52287337	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.278	26	0	0	NA	exonic	Tox4	nonsynonymous SNV	Tox4:NM_023434:exon6:c.G616A:p.G206R	14qC2	chr14-44505690-52852156	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9752194	AGG	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	79	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9988072	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	122	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999001	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	127	0	0	NA	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999251	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	55650373	12A2p6	cell line	sgMsh2	55650373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	111	0	0	NA	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon1:c.A25C:p.T9P,Tssk4:NM_001253889:exon1:c.A25C:p.T9P,Tssk4:NM_027673:exon1:c.A25C:p.T9P"	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.651091718	2	0.9823053	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	28	0	0	NA	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9778608	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	55	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr14	55831705	12A2p6	cell line	sgMsh2	55831705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	32	0	0	NA	exonic	Nfatc4	synonymous SNV	"Nfatc4:NM_001168346:exon7:c.T1926C:p.S642S,Nfatc4:NM_023699:exon7:c.T1926C:p.S642S"	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9823429	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr14	55866051	12A2p6	cell line	sgMsh2	55866051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	227	0	0	NA	exonic	Nynrin	nonsynonymous SNV	Nynrin:NM_001040072:exon4:c.T2351C:p.V784A	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	133	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	2	0.9730688	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	154	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999842	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	275	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.923733	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	57808014	12A2p6	cell line	sgMsh2	57808014	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	96	0	0	NA	exonic	Ska3	frameshift deletion	Ska3:NM_198605:exon8:c.1199delA:p.K400Rfs*30	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	187	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	186	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999975	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M4_p20	chr14	64029911	12A2p6	cell line	sgMsh2	64029911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	49	0	0	NA	exonic	Rp1l1	nonsynonymous SNV	Rp1l1:NM_146246:exon4:c.C2945A:p.P982Q	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CCG	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr14	65931023	12A2p6	cell line	sgMsh2	65931023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	223	0	0	NA	exonic	Scara3	nonsynonymous SNV	Scara3:NM_172604:exon5:c.C1144T:p.R382W	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	115	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998503	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	93	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M4_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	171	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	427	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	2	1.03E-09	CGG	synonymous	NA	NA	NA	NA
M4_p20	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.162	102	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9864547	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.211	232	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr14	69032369	12A2p6	cell line	sgMsh2	69032369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	139	0	0	NA	exonic	Stc1	nonsynonymous SNV	Stc1:NM_009285:exon3:c.A397G:p.N133D	14qD2	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	69796307	12A2p6	cell line	sgMsh2	69796307	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.116	187	0	0	NA	exonic	Rhobtb2	nonsynonymous SNV	Rhobtb2:NM_153514:exon5:c.G1468A:p.V490I	14qD2	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.634677641	2	0.9999041	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	73282885	12A2p6	cell line	sgMsh2	73282885	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	161	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon7:c.T683C:p.L228P	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999895	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	80	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	176	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	200	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999989	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr14	75292284	12A2p6	cell line	sgMsh2	75292284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	128	0	0	NA	exonic	Zc3h13	nonsynonymous SNV	"Zc3h13:NM_001359875:exon3:c.G224A:p.R75K,Zc3h13:NM_026083:exon3:c.G224A:p.R75K"	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	76095067	12A2p6	cell line	sgMsh2	76095067	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	292	0	0	NA	exonic	Gpalpp1	synonymous SNV	Gpalpp1:NM_026177:exon7:c.T762C:p.D254D	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	6.50E-09	CAT	synonymous	TCTT	8	TCTTTCTT	NA
M4_p20	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	84	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.993042	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	56	0	0	NA	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	105	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.765990257	1	0.5598776	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	88468805	12A2p6	cell line	sgMsh2	88468805	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.421	160	0	0	NA	exonic	Pcdh20	frameshift deletion	Pcdh20:NM_178685:exon3:c.1058delA:p.N353Mfs*47	14qE1	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	75	0	0	NA	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998498	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	101607988	12A2p6	cell line	sgMsh2	101607988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	103	0	0	NA	exonic	Tbc1d4	nonsynonymous SNV	Tbc1d4:NM_001081278:exon1:c.T473C:p.V158A	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.9220962	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	103126690	12A2p6	cell line	sgMsh2	103126690	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	242	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon78:c.T13172A:p.L4391Q	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	352	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.17E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.138	45	0	0	NA	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	1	0.7657523	GCC	synonymous	NA	NA	NA	NA
M4_p20	chr14	106107404	12A2p6	cell line	sgMsh2	106107404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	42	0	0	NA	exonic	Trim52	synonymous SNV	Trim52:NM_198601:exon1:c.T495C:p.R165R	14qE2.3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9779247	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	120	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.7885607	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	118534037	12A2p6	cell line	sgMsh2	118534037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	124	0	0	NA	exonic	Abcc4	nonsynonymous SNV	"Abcc4:NM_001163676:exon20:c.T2416C:p.Y806H,Abcc4:NM_001033336:exon21:c.T2641C:p.Y881H,Abcc4:NM_001163675:exon21:c.T2512C:p.Y838H"	14qE4	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999911	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	182	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999969	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	233	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53294676-123291781	4	3	1	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	175	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	357	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	212	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M4_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	130	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999937	ATG	synonymous	A	5	AAAAA	NA
M4_p20	chr15	5098523	12A2p6	cell line	sgMsh2	5098523	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	269	0	0	NA	exonic	Card6	synonymous SNV	Card6:NM_001163138:exon4:c.C3390T:p.S1130S	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.180554846	3	1	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	209	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.574492692	2	0.9999991	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	8202293	12A2p6	cell line	sgMsh2	8202293	A	-	Deletion	Strelka2;Vardict	2	0.3023	43	0	0	NA	exonic	Cplane1	frameshift deletion	Cplane1:NM_001162906:exon19:c.3222delA:p.N1077Mfs*29	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M4_p20	chr15	8228930	12A2p6	cell line	sgMsh2	8228930	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	94	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon34:c.A6659T:p.Q2220L	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	8295648	12A2p6	cell line	sgMsh2	8295648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	134	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon44:c.A7530C:p.E2510D,Nipbl:NM_201232:exon44:c.A7530C:p.E2510D"	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.601849487	2	0.99941	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	195	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	2	0.9850907	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	108	0	0	NA	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997759	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	122	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	0.9997735	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	47	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	CTT	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Vardict	2	0.137	156	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr15	21492596	12A2p6	cell line	sgMsh2	21492596	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	0	0	NA	exonic	Cdh12	stopgain	Cdh12:NM_001008420:exon5:c.C700T:p.Q234X	15qA2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9845624	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	27848986	12A2p6	cell line	sgMsh2	27848986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	102	0	0	NA	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon16:c.C2821A:p.Q941K	15qB1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996833	TGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	222	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9998418	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	401	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	31297925	12A2p6	cell line	sgMsh2	31297925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	152	0	0	NA	exonic	Ankrd33b	nonsynonymous SNV	"Ankrd33b:NM_001357922:exon3:c.T115C:p.Y39H,Ankrd33b:NM_001164441:exon4:c.T685C:p.Y229H,Ankrd33b:NM_027496:exon4:c.T658C:p.Y220H,Ankrd33b:NM_001357923:exon5:c.T271C:p.Y91H"	15qB2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999823	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	46	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.992049	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	329	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M4_p20	chr15	34526254	12A2p6	cell line	sgMsh2	34526254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	114	0	0	NA	exonic	Pop1	nonsynonymous SNV	"Pop1:NM_026340:exon14:c.A1994G:p.D665G,Pop1:NM_152894:exon15:c.A2084G:p.D695G"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.519779103	2	0.9956036	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	35371970	12A2p6	cell line	sgMsh2	35371970	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.144	138	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T10C:p.S4P	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	1	0.6491897	GTC	nonsynonymous	CGTA	8	CGTACGTA	NA
M4_p20	chr15	35882975	12A2p6	cell line	sgMsh2	35882975	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	250	0	0	NA	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon51:c.G9264T:p.T3088T	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.999738	CGC	synonymous	NA	NA	NA	NA
M4_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	182	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999969	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	35910807	12A2p6	cell line	sgMsh2	35910807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	199	0	0	NA	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon56:c.T10716C:p.H3572H	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.981426	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr15	36162709	12A2p6	cell line	sgMsh2	36162709	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	287	0	0	NA	exonic	Fbxo43	synonymous SNV	"Fbxo43:NM_001081253:exon2:c.T351G:p.S117S,Fbxo43:NM_001368658:exon2:c.T492G:p.S164S"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.34E-09	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	141	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999666	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M4_p20	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998503	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	37981514	12A2p6	cell line	sgMsh2	37981514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	347	0	0	NA	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon49:c.T7037C:p.M2346T,Ubr5:NM_001112721:exon49:c.T7019C:p.M2340T"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.23E-09	CAT	nonsynonymous	CTC	9	CTCCTCCTC	NA
M4_p20	chr15	39675081	12A2p6	cell line	sgMsh2	39675081	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	92	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon2:c.A284C:p.N95T,Rims2:NM_001256383:exon22:c.A4079C:p.N1360T,Rims2:NM_001256382:exon23:c.A4145C:p.N1382T,Rims2:NM_053271:exon23:c.A4019C:p.N1340T"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	AAG	nonsynonymous	GGAA	8	GGAAGGAA	NA
M4_p20	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	419	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	42523589	12A2p6	cell line	sgMsh2	42523589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	238	0	0	NA	exonic	Angpt1	nonsynonymous SNV	"Angpt1:NM_001286062:exon2:c.A368G:p.H123R,Angpt1:NM_009640:exon2:c.A368G:p.H123R"	15qB3.1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9987522	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	205	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.9414242	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	47838514	12A2p6	cell line	sgMsh2	47838514	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	357	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon31:c.C5172T:p.T1724T	15qB3.3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.13E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr15	48011196	12A2p6	cell line	sgMsh2	48011196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	234	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon14:c.G2003A:p.G668D	15qB3.3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9996136	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9999932	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	140	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	2	0.9993735	TAA	synonymous	NA	NA	NA	NA
M4_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	146	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999975	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	71	0	0	NA	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9981089	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	184	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999972	TGA	synonymous	NA	NA	NA	NA
M4_p20	chr15	66016453	12A2p6	cell line	sgMsh2	66016453	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.139	45	0	0	NA	exonic	Kcnq3	nonsynonymous SNV	Kcnq3:NM_152923:exon9:c.G1261T:p.A421S	15qD1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	1	0.7798088	GCT	nonsynonymous	GCT	9	GCTGCTGCT	NA
M4_p20	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	178	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999996	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	73210751	12A2p6	cell line	sgMsh2	73210751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	190	0	0	NA	exonic	Ptk2	synonymous SNV	"Ptk2:NM_007982:exon30:c.T2856C:p.P952P,Ptk2:NM_001358045:exon32:c.T2997C:p.P999P,Ptk2:NM_001358046:exon33:c.T2904C:p.P968P"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999998	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr15	73229946	12A2p6	cell line	sgMsh2	73229946	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	117	0	0	NA	exonic	Ptk2	frameshift deletion	"Ptk2:NM_007982:exon26:c.2414delC:p.P805Lfs*2,Ptk2:NM_001358045:exon27:c.2546delC:p.P849Lfs*2,Ptk2:NM_001358046:exon28:c.2453delC:p.P818Lfs*2"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4_p20	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	157	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999867	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	75757657	12A2p6	cell line	sgMsh2	75757657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	151	0	0	NA	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.A2360G:p.Q787R	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999812	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	120	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998878	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	129	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76172453	12A2p6	cell line	sgMsh2	76172453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	152	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.T13436C:p.M4479T,Plec:NM_201385:exon32:c.T13322C:p.M4441T,Plec:NM_201386:exon32:c.T13283C:p.M4428T,Plec:NM_201387:exon32:c.T12878C:p.M4293T,Plec:NM_201388:exon32:c.T12878C:p.M4293T,Plec:NM_201389:exon32:c.T13778C:p.M4593T,Plec:NM_201390:exon32:c.T13253C:p.M4418T,Plec:NM_201391:exon32:c.T13349C:p.M4450T,Plec:NM_201392:exon32:c.T12878C:p.M4293T,Plec:NM_201393:exon32:c.T13370C:p.M4457T,Plec:NM_201394:exon32:c.T13349C:p.M4450T,Plec:NM_001163540:exon33:c.T13793C:p.M4598T,Plec:NM_001163549:exon33:c.T13364C:p.M4455T,Plec:NM_001163542:exon34:c.T13487C:p.M4496T,Plec:NM_001164203:exon34:c.T12878C:p.M4293T"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.771461615	2	0.5875283	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	263	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.03E-08	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.242	45	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.25	44	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9910852	AGA	synonymous	NA	NA	NA	NA
M4_p20	chr15	76504139	12A2p6	cell line	sgMsh2	76504139	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	272	0	0	NA	exonic	Dgat1	nonsynonymous SNV	Dgat1:NM_010046:exon6:c.T577G:p.L193V	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.84E-08	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Vardict	2	0.118	97	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M4_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	290	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4_p20	chr15	76623407	12A2p6	cell line	sgMsh2	76623407	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	267	0	0	NA	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.A168T:p.E56D,Vps28:NM_025842:exon6:c.A282T:p.E94D"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.43E-08	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76623440	12A2p6	cell line	sgMsh2	76623440	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	230	0	0	NA	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.G135T:p.Q45H,Vps28:NM_025842:exon6:c.G249T:p.Q83H"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	83	0	0	NA	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	191	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999981	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	76891629	12A2p6	cell line	sgMsh2	76891629	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	104	0	0	NA	exonic	Zfp7	frameshift deletion	"Zfp7:NM_001358816:exon5:c.1870delA:p.V626Cfs*3,Zfp7:NM_001358817:exon5:c.1867delA:p.V625Cfs*3,Zfp7:NM_001358818:exon5:c.1441delA:p.V483Cfs*3,Zfp7:NM_145916:exon5:c.1870delA:p.V626Cfs*3"	15qD3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	364	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.09E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	69	0	0	NA	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	137	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999579	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr15	78410352	12A2p6	cell line	sgMsh2	78410352	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	85	0	0	NA	exonic	Mpst	nonsynonymous SNV	"Mpst:NM_001162492:exon2:c.A283G:p.T95A,Mpst:NM_001162493:exon2:c.A283G:p.T95A,Mpst:NM_138670:exon2:c.A283G:p.T95A"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	1	6.38E-08	CAC	nonsynonymous	CACG	8	CACGCACG	NA
M4_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	108	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9991776	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	118	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998741	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	79726542	12A2p6	cell line	sgMsh2	79726542	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	162	0	0	NA	exonic	Sun2	synonymous SNV	"Sun2:NM_194342:exon16:c.G1986A:p.Q662Q,Sun2:NM_001205345:exon17:c.G2082A:p.Q694Q,Sun2:NM_001205346:exon17:c.G2076A:p.Q692Q"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999901	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr15	80374803	12A2p6	cell line	sgMsh2	80374803	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	62	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon21:c.A3712G:p.T1238A	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.650778	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	190	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999998	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	163	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.541664539	2	0.9998637	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr15	81776859	12A2p6	cell line	sgMsh2	81776859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	68	0	0	NA	exonic	Zc3h7b	nonsynonymous SNV	Zc3h7b:NM_001081016:exon10:c.A898G:p.T300A	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9977524	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	83800023	12A2p6	cell line	sgMsh2	83800023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	119	0	0	NA	exonic	Mpped1	nonsynonymous SNV	"Mpped1:NM_001359131:exon3:c.A245G:p.D82G,Mpped1:NM_001359132:exon3:c.A245G:p.D82G,Mpped1:NM_172610:exon3:c.A245G:p.D82G"	15qE1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.552607256	2	0.9993036	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	510	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	222	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	223	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr15	85251547	12A2p6	cell line	sgMsh2	85251547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	43	0	0	NA	exonic	Fbln1	synonymous SNV	Fbln1:NM_001347088:exon15:c.A1806G:p.P602P	15qE2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr15	85862673	12A2p6	cell line	sgMsh2	85862673	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	77	0	0	NA	exonic	Gtse1	nonsynonymous SNV	"Gtse1:NM_013882:exon3:c.A689C:p.N230T,Gtse1:NM_001168672:exon4:c.A689C:p.N230T"	15qE2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9986615	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	60	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9964389	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	477	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9998285	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	92	0	0	NA	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.744104821	2	6.53E-08	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr15	89474797	12A2p6	cell line	sgMsh2	89474797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	53	0	0	NA	exonic	Arsa	nonsynonymous SNV	Arsa:NM_009713:exon4:c.A665G:p.Y222C	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	276	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9996281	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	91739359	12A2p6	cell line	sgMsh2	91739359	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	113	0	0	NA	exonic	Lrrk2	nonsynonymous SNV	Lrrk2:NM_025730:exon25:c.C3445T:p.L1149F	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999832	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	92757697	12A2p6	cell line	sgMsh2	92757697	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	140	0	0	NA	exonic	Pdzrn4	synonymous SNV	"Pdzrn4:NM_001164594:exon7:c.G753A:p.E251E,Pdzrn4:NM_001164593:exon9:c.G1470A:p.E490E"	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999646	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr15	94345750	12A2p6	cell line	sgMsh2	94345750	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	185	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon14:c.T1997G:p.L666R,Adamts20:NM_177431:exon14:c.T1997G:p.L666R"	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999974	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	243	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	43	0	0	NA	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	97968638	12A2p6	cell line	sgMsh2	97968638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	309	0	0	NA	exonic	Tmem106c	nonsynonymous SNV	"Tmem106c:NM_001252153:exon7:c.T626C:p.V209A,Tmem106c:NM_001356508:exon7:c.T626C:p.V209A,Tmem106c:NM_201359:exon7:c.T626C:p.V209A"	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.06E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	123	0	0	NA	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	201	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9999986	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	371	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.06E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	184	0	0	NA	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9999972	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	98839329	12A2p6	cell line	sgMsh2	98839329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	238	0	0	NA	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon49:c.A15885C:p.K5295N	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	99082279	12A2p6	cell line	sgMsh2	99082279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	72	0	0	NA	exonic	Troap	nonsynonymous SNV	"Troap:NM_001162506:exon12:c.A1339G:p.N447D,Troap:NM_030159:exon12:c.A1339G:p.N447D"	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	99719240	12A2p6	cell line	sgMsh2	99719240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	255	0	0	NA	exonic	Gpd1	nonsynonymous SNV	Gpd1:NM_010271:exon3:c.T326C:p.L109S	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9913294	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	252	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9999995	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	87	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr15	101694066	12A2p6	cell line	sgMsh2	101694066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	47	0	0	NA	exonic	Krt6a	synonymous SNV	Krt6a:NM_008476:exon1:c.T183C:p.G61G	15qF2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr15	101947866	12A2p6	cell line	sgMsh2	101947866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	277	0	0	NA	exonic	Krt78	synonymous SNV	Krt78:NM_212487:exon9:c.T1509C:p.P503P	15qF2	chr15-3279130-102635078	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.41E-08	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	334	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M4_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	205	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	258	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	3991954	12A2p6	cell line	sgMsh2	3991954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	80	0	0	NA	exonic	Slx4	nonsynonymous SNV	Slx4:NM_177472:exon5:c.T803C:p.L268P	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	4107512	12A2p6	cell line	sgMsh2	4107512	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	157	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon19:c.A3617G:p.E1206G	16qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	37	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9867087	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	138	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999603	CAA	synonymous	NA	NA	NA	NA
M4_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	52	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9895051	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	303	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.92E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	206	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	10573360	12A2p6	cell line	sgMsh2	10573360	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	226	0	0	NA	exonic	Clec16a	nonsynonymous SNV	"Clec16a:NM_001204229:exon6:c.A659G:p.N220S,Clec16a:NM_177562:exon6:c.A665G:p.N222S"	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	11235405	12A2p6	cell line	sgMsh2	11235405	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	175	0	0	NA	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon6:c.A731G:p.K244R,Gspt1:NM_146066:exon6:c.A734G:p.K245R"	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999953	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	171	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999941	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	182	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999969	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	102	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996833	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	245	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	240	0	0	NA	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M4_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	210	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	190	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9984237	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	109	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997885	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17141957	12A2p6	cell line	sgMsh2	17141957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	183	0	0	NA	exonic	Ccdc116	synonymous SNV	"Ccdc116:NM_001306169:exon4:c.T867C:p.P289P,Ccdc116:NM_001373948:exon4:c.T867C:p.P289P,Ccdc116:NM_029779:exon4:c.T867C:p.P289P"	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	TAG	synonymous	TAGG	8	TAGGTAGG	NA
M4_p20	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	56	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	385	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.03E-09	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	173	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999947	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17520564	12A2p6	cell line	sgMsh2	17520564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	87	0	0	NA	exonic	Lztr1	nonsynonymous SNV	"Lztr1:NM_001331226:exon9:c.T650C:p.L217P,Lztr1:NM_001331227:exon9:c.T203C:p.L68P,Lztr1:NM_025808:exon9:c.T911C:p.L304P"	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992478	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995257	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	17807146	12A2p6	cell line	sgMsh2	17807146	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.5	9	0	0	NA	exonic	Scarf2	synonymous SNV	Scarf2:NM_153790:exon11:c.A2064G:p.K688K	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.935888	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	92	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	81	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	156	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	1	0.9991532	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	239	0	0	NA	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	27346894	12A2p6	cell line	sgMsh2	27346894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	237	0	0	NA	exonic	Ostn	nonsynonymous SNV	Ostn:NM_198112:exon4:c.A332G:p.K111R	16qB2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AAG	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr16	32671419	12A2p6	cell line	sgMsh2	32671419	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	50	0	0	NA	exonic	Tnk2	nonsynonymous SNV	"Tnk2:NM_001110147:exon8:c.C1139T:p.A380V,Tnk2:NM_016788:exon8:c.C1139T:p.A380V"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9936771	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	159	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9986437	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	321	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	253	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	88	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992899	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	35841541	12A2p6	cell line	sgMsh2	35841541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	143	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon13:c.A4123G:p.K1375E	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999702	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	236	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr16	36969312	12A2p6	cell line	sgMsh2	36969312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	201	0	0	NA	exonic	Fbxo40	nonsynonymous SNV	"Fbxo40:NM_001037321:exon2:c.T1435C:p.F479L,Fbxo40:NM_001358217:exon3:c.T1435C:p.F479L"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	149	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999789	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	61	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	43609697	12A2p6	cell line	sgMsh2	43609697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	138	0	0	NA	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.T351C:p.T117T,Zbtb20:NM_019778:exon8:c.T570C:p.T190T,Zbtb20:NM_001285805:exon10:c.T570C:p.T190T"	16qB4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999603	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	454	0	0	NA	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	TCT	synonymous	NA	NA	NA	NA
M4_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	232	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	44496409	12A2p6	cell line	sgMsh2	44496409	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	68	0	0	NA	exonic	Boc	nonsynonymous SNV	Boc:NM_172506:exon8:c.A1370C:p.K457T	16qB4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9977524	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	399	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	49138724	12A2p6	cell line	sgMsh2	49138724	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	135	0	0	NA	exonic	Myh15	synonymous SNV	Myh15:NM_001166210:exon24:c.A2958G:p.V986V	16qB5	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999528	TAG	synonymous	AGTAG	10	AGTAGAGTAG	NA
M4_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	207	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	248	0	0	NA	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	260	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.59E-08	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	88	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992899	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	282	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.08E-08	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	219	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	513	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	59361648	12A2p6	cell line	sgMsh2	59361648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	333	0	0	NA	exonic	Olfr207;Olfr209	nonsynonymous SNV	"Olfr207:NM_001011792:exon1:c.A569G:p.D190G,Olfr209:NM_207551:exon1:c.A569G:p.D190G"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9283739	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	59433483	12A2p6	cell line	sgMsh2	59433483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	277	0	0	NA	exonic	Gabrr3	nonsynonymous SNV	Gabrr3:NM_001081190:exon5:c.T562C:p.F188L	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.41E-08	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	85	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.403	64	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr16	63652282	12A2p6	cell line	sgMsh2	63652282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	290	0	0	NA	exonic	Epha3	nonsynonymous SNV	"Epha3:NM_001362452:exon5:c.T1239G:p.N413K,Epha3:NM_010140:exon5:c.T1239G:p.N413K"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.18E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.387	67	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chr16	66815326	12A2p6	cell line	sgMsh2	66815326	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	309	0	0	NA	exonic	Cadm2	nonsynonymous SNV	"Cadm2:NM_001145977:exon3:c.C347T:p.A116V,Cadm2:NM_001347247:exon3:c.C347T:p.A116V,Cadm2:NM_178721:exon4:c.C374T:p.A125V"	16qC1.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.06E-09	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	69861664	12A2p6	cell line	sgMsh2	69861664	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	383	0	0	NA	exonic	Speer2	nonsynonymous SNV	Speer2:NM_173069:exon2:c.G112A:p.G38R	16qC2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.03E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	487	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	73027766	12A2p6	cell line	sgMsh2	73027766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	49	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon26:c.A4175G:p.H1392R	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CAC	nonsynonymous	GCC	9	GCCGCCGCC	NA
M4_p20	chr16	73933776	12A2p6	cell line	sgMsh2	73933776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	330	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_175549:exon20:c.A2947G:p.T983A,Robo2:NM_001358491:exon21:c.A3028G:p.T1010A,Robo2:NM_001358492:exon21:c.A3028G:p.T1010A,Robo2:NM_001358493:exon21:c.A3028G:p.T1010A,Robo2:NM_001358494:exon21:c.A2959G:p.T987A"	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.61E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	73956550	12A2p6	cell line	sgMsh2	73956550	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	249	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_175549:exon16:c.A2438T:p.E813V,Robo2:NM_001358491:exon17:c.A2519T:p.E840V,Robo2:NM_001358492:exon17:c.A2519T:p.E840V,Robo2:NM_001358493:exon17:c.A2519T:p.E840V,Robo2:NM_001358494:exon17:c.A2450T:p.E817V"	16qC3.1	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	79087489	12A2p6	cell line	sgMsh2	79087489	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	128	0	0	NA	exonic	Tmprss15	synonymous SNV	"Tmprss15:NM_008941:exon3:c.C304T:p.L102L,Tmprss15:NM_178855:exon3:c.C304T:p.L102L"	16qC3.2	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9804762	AGA	synonymous	NA	NA	NA	NA
M4_p20	chr16	81443212	12A2p6	cell line	sgMsh2	81443212	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	106	0	0	NA	exonic	Ncam2	frameshift deletion	"Ncam2:NM_001113208:exon5:c.560delA:p.G188Efs*24,Ncam2:NM_010954:exon5:c.560delA:p.G188Efs*24"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	GAAG	8	GAAGGAAG	-1
M4_p20	chr16	85103214	12A2p6	cell line	sgMsh2	85103214	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	exonic	App	nonsynonymous SNV	"App:NM_001198823:exon3:c.G347C:p.R116P,App:NM_001198824:exon3:c.G347C:p.R116P,App:NM_001198825:exon3:c.G347C:p.R116P,App:NM_001198826:exon3:c.G347C:p.R116P,App:NM_007471:exon3:c.G347C:p.R116P"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.84E-08	ACG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	90	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993673	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	88751510	12A2p6	cell line	sgMsh2	88751510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	130	0	0	NA	exonic	Krtap13	nonsynonymous SNV	Krtap13:NM_010671:exon1:c.A89G:p.Y30C	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	0.9995214	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	77	0	0	NA	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M4_p20	chr16	90944553	12A2p6	cell line	sgMsh2	90944553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	162	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon31:c.A3711G:p.P1237P,Synj1:NM_001164483:exon31:c.A3831G:p.P1277P"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	266	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.57E-08	CGC	synonymous	NA	NA	NA	NA
M4_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	224	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M4_p20	chr16	93752143	12A2p6	cell line	sgMsh2	93752143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	315	0	0	NA	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon7:c.T570C:p.N190N,Dop1b:NM_027293:exon8:c.T924C:p.N308N"	16qC4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.46E-09	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	130	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.999937	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	96315804	12A2p6	cell line	sgMsh2	96315804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	179	0	0	NA	exonic	B3galt5	stopgain	"B3galt5:NM_001358390:exon3:c.C636A:p.C212X,B3galt5:NM_033149:exon3:c.C636A:p.C212X,B3galt5:NM_001122993:exon4:c.C636A:p.C212X,B3galt5:NM_001358389:exon4:c.C636A:p.C212X"	16qC4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999963	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	214	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M4_p20	chr17	3178204	12A2p6	cell line	sgMsh2	3178204	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	22	0	0	NA	exonic	Scaf8	nonsynonymous SNV	Scaf8:NM_134123:exon12:c.A1276G:p.K426E	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9689818	AAA	nonsynonymous	CGAAAG	13	CGAAAGCGAAAGC	NA
M4_p20	chr17	5986071	12A2p6	cell line	sgMsh2	5986071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	80	0	0	NA	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001113351:exon2:c.A59G:p.Y20C,Synj2:NM_001357667:exon2:c.A59G:p.Y20C,Synj2:NM_011523:exon2:c.A59G:p.Y20C,Synj2:NM_001113352:exon3:c.A314G:p.Y105C,Synj2:NM_001113353:exon3:c.A314G:p.Y105C"	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	TAC	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	530	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	8757066	12A2p6	cell line	sgMsh2	8757066	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	163	0	0	NA	exonic	Pde10a	nonsynonymous SNV	Pde10a:NM_001290707:exon2:c.G202T:p.G68C	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999906	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	204	0	0	NA	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	12967495	12A2p6	cell line	sgMsh2	12967495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	183	0	0	NA	exonic	Wtap	synonymous SNV	"Wtap:NM_001113533:exon8:c.T1164C:p.N388N,Wtap:NM_001379058:exon8:c.T1164C:p.N388N"	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	CAT	synonymous	TACATT	13	TACATTTACATTT	NA
M4_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	805	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9999918	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	1155	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.662034436	2	1	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	78	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-14988397	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9987364	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	173	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999947	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	455	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	318	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr17	18313241	12A2p6	cell line	sgMsh2	18313241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	374	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon4:c.T1406C:p.L469S	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.05E-09	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	258	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.01E-08	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.154	578	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	1	0.9973571	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	438	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	978	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	19773564	12A2p6	cell line	sgMsh2	19773564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	234	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon1:c.T202C:p.L68L	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.287	577	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr17	19811802	12A2p6	cell line	sgMsh2	19811802	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	610	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A1837T:p.I613F	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20041610	12A2p6	cell line	sgMsh2	20041610	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	360	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.G1257T:p.Q419H	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9999905	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	293	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	6.19E-09	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	333	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.52E-09	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	326	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.77E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20268253	12A2p6	cell line	sgMsh2	20268253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	414	0	0	NA	exonic	Vmn2r106	nonsynonymous SNV	"Vmn2r106:NM_001104568:exon6:c.A1883G:p.Y628C,Vmn2r106:NM_001385160:exon6:c.A1871G:p.Y624C"	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20582156	12A2p6	cell line	sgMsh2	20582156	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	262	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon4:c.A1456T:p.N486Y	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.21E-08	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20776752	12A2p6	cell line	sgMsh2	20776752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	289	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T503C:p.M168T	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.54E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	273	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.75E-08	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	277	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.41E-08	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	660	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	2	1	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	196	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999986	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	24572817	12A2p6	cell line	sgMsh2	24572817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	200	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon15:c.T3477C:p.D1159D	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr17	24573905	12A2p6	cell line	sgMsh2	24573905	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	84	0	0	NA	exonic	Pkd1	nonsynonymous SNV	Pkd1:NM_013630:exon15:c.C4565T:p.S1522F	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991058	TCT	nonsynonymous	CTGG	8	CTGGCTGG	NA
M4_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	58	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9960051	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	129	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999333	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M4_p20	chr17	25790563	12A2p6	cell line	sgMsh2	25790563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	60	0	0	NA	exonic	Antkmt	synonymous SNV	"Antkmt:NM_001285982:exon5:c.T441C:p.P147P,Antkmt:NM_001357989:exon5:c.T441C:p.P147P,Antkmt:NM_145410:exon5:c.T675C:p.P225P"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9964389	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	53	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	26123626	12A2p6	cell line	sgMsh2	26123626	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	45	0	0	NA	exonic	Mrpl28	nonsynonymous SNV	Mrpl28:NM_024227:exon1:c.C65T:p.A22V	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	102	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996833	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	33	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9833163	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	251	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	123	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	70	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9979968	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	28644614	12A2p6	cell line	sgMsh2	28644614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	297	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon17:c.A2170G:p.T724A	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.12E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	256	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.49E-08	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	28899714	12A2p6	cell line	sgMsh2	28899714	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.374	28	0	0	NA	exonic	Bnip5	frameshift deletion	Bnip5:NM_172450:exon11:c.1743delT:p.F581Lfs*15	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	193	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999983	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	29342862	12A2p6	cell line	sgMsh2	29342862	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	51	0	0	NA	exonic	Mtch1	nonsynonymous SNV	"Mtch1:NM_001347335:exon2:c.G367A:p.G123R,Mtch1:NM_001357762:exon2:c.G31A:p.G11R,Mtch1:NM_001357763:exon2:c.G31A:p.G11R,Mtch1:NM_019880:exon2:c.G367A:p.G123R"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9936001	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	48	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9929093	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M4_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	215	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9986836	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Vardict	2	0.184	152	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.186	147	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	87	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.705805308	2	0.7559637	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	30936331	12A2p6	cell line	sgMsh2	30936331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	40	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon13:c.T1291C:p.C431R	17qA3.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9887973	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	173	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999947	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M4_p20	chr17	32034457	12A2p6	cell line	sgMsh2	32034457	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	72	0	0	NA	exonic	Hsf2bp	nonsynonymous SNV	Hsf2bp:NM_028902:exon1:c.G36T:p.E12D	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	32056739	12A2p6	cell line	sgMsh2	32056739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	70	0	0	NA	exonic	Rrp1b	nonsynonymous SNV	"Rrp1b:NM_001163734:exon10:c.A956T:p.Q319L,Rrp1b:NM_028244:exon13:c.A1259T:p.Q420L"	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9979968	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	179	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999963	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	33935440	12A2p6	cell line	sgMsh2	33935440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	178	0	0	NA	exonic	Rgl2	nonsynonymous SNV	Rgl2:NM_009059:exon14:c.T1589C:p.I530T	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999996	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34026901	12A2p6	cell line	sgMsh2	34026901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	167	0	0	NA	exonic	H2-Ke6	nonsynonymous SNV	H2-Ke6:NM_013543:exon6:c.T595C:p.F199L	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999925	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34042448	12A2p6	cell line	sgMsh2	34042448	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	24	0	0	NA	exonic	Col11a2	nonsynonymous SNV	"Col11a2:NM_001317722:exon3:c.C280A:p.P94T,Col11a2:NM_009926:exon3:c.C280A:p.P94T"	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9722712	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34445497	12A2p6	cell line	sgMsh2	34445497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	487	0	0	NA	exonic	BC051142	synonymous SNV	"BC051142:NM_001001177:exon10:c.C342T:p.T114T,BC051142:NM_001163855:exon14:c.C336T:p.T112T"	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	35	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9851073	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	123	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999057	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34572515	12A2p6	cell line	sgMsh2	34572515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	72	0	0	NA	exonic	Notch4	synonymous SNV	Notch4:NM_010929:exon10:c.T1635C:p.C545C	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	39	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9881399	GAG	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	115	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998503	GCT	synonymous	G	5	GGGGG	NA
M4_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	21	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9671975	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	73	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	267	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.43E-08	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	34876169	12A2p6	cell line	sgMsh2	34876169	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	160	0	0	NA	exonic	C2	frameshift deletion	C2:NM_013484:exon5:c.721delC:p.Q241Rfs*3	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	TGGG	8	TGGGTGGG	-1
M4_p20	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	91	0	0	NA	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994027	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	35071654	12A2p6	cell line	sgMsh2	35071654	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.384	83	0	0	NA	exonic	Ly6g6d	frameshift deletion	"Ly6g6d:NM_033478:exon3:c.299delA:p.N100Tfs*15,Ly6g6d:NM_001371027:exon4:c.272delA:p.N91Tfs*15,Ly6g6d:NM_001371028:exon5:c.263delA:p.N88Tfs*15"	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr17	35078280	12A2p6	cell line	sgMsh2	35078280	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	112	0	0	NA	exonic	Ly6g6e	nonsynonymous SNV	Ly6g6e:NM_027366:exon3:c.C400A:p.L134I	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998221	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	76	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	82	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9989965	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	56	0	0	NA	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9955188	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	137	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	2	0.9998117	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	36671197	12A2p6	cell line	sgMsh2	36671197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	392	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon3:c.G511A:p.E171K	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-09	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	193	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9999054	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	37623831	12A2p6	cell line	sgMsh2	37623831	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	299	0	0	NA	exonic	Olfr116	nonsynonymous SNV	Olfr116:NM_146632:exon1:c.C803T:p.T268I	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.67E-09	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	480	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	754	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M4_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.268	155	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M4_p20	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	241	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	684	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	92	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	42503010	12A2p6	cell line	sgMsh2	42503010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	208	0	0	NA	exonic	Ptchd4	nonsynonymous SNV	"Ptchd4:NM_001355270:exon3:c.A1810G:p.T604A,Ptchd4:NM_028474:exon4:c.A1801G:p.T601A"	17qB3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	45	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	400	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	285	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	9.24E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999823	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	18	0	0	NA	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9612222	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	202	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999999	TGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46321655	12A2p6	cell line	sgMsh2	46321655	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	88	0	0	NA	exonic	Abcc10	frameshift deletion	"Abcc10:NM_145140:exon4:c.1653delC:p.A552Qfs*31,Abcc10:NM_001347396:exon5:c.1776delC:p.A593Qfs*31,Abcc10:NM_170680:exon5:c.1776delC:p.A593Qfs*31"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M4_p20	chr17	46323357	12A2p6	cell line	sgMsh2	46323357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	67	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon2:c.A1483G:p.T495A,Abcc10:NM_001347396:exon3:c.A1606G:p.T536A,Abcc10:NM_170680:exon3:c.A1606G:p.T536A"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9976192	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	145	0	0	NA	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.990315974	1	0.9999581	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46657444	12A2p6	cell line	sgMsh2	46657444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	161	0	0	NA	exonic	Cul7	nonsynonymous SNV	Cul7:NM_025611:exon11:c.A2335G:p.M779V	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999895	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	46661447	12A2p6	cell line	sgMsh2	46661447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	257	0	0	NA	exonic	Cul7	nonsynonymous SNV	Cul7:NM_025611:exon20:c.T3736C:p.Y1246H	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.24E-08	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	49071098	12A2p6	cell line	sgMsh2	49071098	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	53	0	0	NA	exonic	Lrfn2	synonymous SNV	Lrfn2:NM_027452:exon2:c.C1206A:p.S402S	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.8536151	CCA	synonymous	NA	NA	NA	NA
M4_p20	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	27	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9765765	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	50283138	12A2p6	cell line	sgMsh2	50283138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	172	0	0	NA	exonic	Dazl	nonsynonymous SNV	"Dazl:NM_001277863:exon9:c.A773G:p.D258G,Dazl:NM_010021:exon10:c.A824G:p.D275G"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9891832	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.227	20	0	0	NA	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9653132	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	50736151	12A2p6	cell line	sgMsh2	50736151	C	-	Deletion	Mutect2;Vardict	2	0.264	28	0	0	NA	exonic	Tbc1d5	frameshift deletion	"Tbc1d5:NM_001285993:exon22:c.2242delG:p.A748Pfs*32,Tbc1d5:NM_028162:exon22:c.2242delG:p.A748Pfs*32,Tbc1d5:NM_001285991:exon23:c.2308delG:p.A770Pfs*32"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4_p20	chr17	50968251	12A2p6	cell line	sgMsh2	50968251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	0	0	NA	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon5:c.T215C:p.V72A,Tbc1d5:NM_001285993:exon5:c.T215C:p.V72A,Tbc1d5:NM_028162:exon5:c.T215C:p.V72A"	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.97E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	52839141	12A2p6	cell line	sgMsh2	52839141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	225	0	0	NA	exonic	Kcnh8	synonymous SNV	Kcnh8:NM_001031811:exon7:c.T1056C:p.S352S	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr17	53462611	12A2p6	cell line	sgMsh2	53462611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	152	0	0	NA	exonic	Efhb	synonymous SNV	Efhb:NM_172497:exon1:c.T669C:p.D223D	17qC	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999823	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	49	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9933041	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	56353539	12A2p6	cell line	sgMsh2	56353539	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	423	0	0	NA	exonic	Kdm4b	nonsynonymous SNV	"Kdm4b:NM_001357909:exon4:c.G332A:p.R111H,Kdm4b:NM_172132:exon4:c.G332A:p.R111H"	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	107	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	56617892	12A2p6	cell line	sgMsh2	56617892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	128	0	0	NA	exonic	Lonp1	nonsynonymous SNV	Lonp1:NM_028782:exon10:c.G1514A:p.G505D	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999293	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	228	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	56654455	12A2p6	cell line	sgMsh2	56654455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	47	0	0	NA	exonic	Catsperd	synonymous SNV	Catsperd:NM_175350:exon13:c.C1176A:p.T392T	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	CCA	synonymous	NA	NA	NA	NA
M4_p20	chr17	56705553	12A2p6	cell line	sgMsh2	56705553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	46	0	0	NA	exonic	Ranbp3	synonymous SNV	"Ranbp3:NM_001252467:exon6:c.T412C:p.L138L,Ranbp3:NM_027933:exon8:c.T571C:p.L191L,Ranbp3:NM_001252466:exon9:c.T772C:p.L258L"	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.992049	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	115	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998503	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	159	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999882	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	374	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.05E-09	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	211	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	112	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998221	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr17	66037583	12A2p6	cell line	sgMsh2	66037583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	exonic	Ankrd12	nonsynonymous SNV	Ankrd12:NM_001025572:exon5:c.A361G:p.T121A	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994027	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	66380313	12A2p6	cell line	sgMsh2	66380313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	132	0	0	NA	exonic	Mtcl1	nonsynonymous SNV	"Mtcl1:NM_001114098:exon5:c.A1597G:p.K533E,Mtcl1:NM_172963:exon5:c.A1597G:p.K533E"	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999439	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.5	11	0	0	NA	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.942737	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M4_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	264	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.87E-08	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	67768409	12A2p6	cell line	sgMsh2	67768409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	81	0	0	NA	exonic	Lama1	stopgain	Lama1:NM_008480:exon22:c.G3120A:p.W1040X	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	67775828	12A2p6	cell line	sgMsh2	67775828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	99	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon28:c.C4080T:p.G1360G	17qE1.1	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996234	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.333	12	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9458533	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	25	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4_p20	chr17	73830095	12A2p6	cell line	sgMsh2	73830095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	59	0	0	NA	exonic	Ehd3	nonsynonymous SNV	Ehd3:NM_020578:exon6:c.G1258T:p.G420C	17qE2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9962282	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.23	153	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	74625239	12A2p6	cell line	sgMsh2	74625239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	118	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon37:c.G7584T:p.K2528N	17qE2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9879904	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	74724715	12A2p6	cell line	sgMsh2	74724715	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	334	0	0	NA	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon4:c.G506A:p.R169H	17qE2	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.49E-09	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	73	0	0	NA	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9983146	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	263	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.03E-08	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	80217259	12A2p6	cell line	sgMsh2	80217259	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	163	0	0	NA	exonic	Ttc39d	nonsynonymous SNV	Ttc39d:NM_026351:exon1:c.A1346G:p.Y449C	17qE3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999906	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	80547702	12A2p6	cell line	sgMsh2	80547702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	537	0	0	NA	exonic	Cdkl4	synonymous SNV	"Cdkl4:NM_001033443:exon5:c.A444G:p.A148A,Cdkl4:NM_001360143:exon5:c.A444G:p.A148A,Cdkl4:NM_001360144:exon5:c.A444G:p.A148A"	17qE3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr17	81445513	12A2p6	cell line	sgMsh2	81445513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	194	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon3:c.G1880T:p.R627L,Slc8a1:NM_001286684:exon3:c.G1880T:p.R627L,Slc8a1:NM_011406:exon3:c.G1880T:p.R627L"	17qE3	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999984	ACG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	317	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.30E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	333	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.52E-09	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M4_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	178	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999996	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	84566101	12A2p6	cell line	sgMsh2	84566101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	80	0	0	NA	exonic	Plekhh2	synonymous SNV	"Plekhh2:NM_001357986:exon8:c.T813C:p.G271G,Plekhh2:NM_001357987:exon8:c.T813C:p.G271G,Plekhh2:NM_177606:exon8:c.T813C:p.G271G"	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	GTG	synonymous	ATGG	8	ATGGATGG	NA
M4_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	110	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998003	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	41	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9894186	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	117	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-15052617-87650787	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998667	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.225	66	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	19.95000083	15.95000083	4	0.9	4.924223078	RARE KARYOTYPE	5	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M4_p20	chr17	87689082	12A2p6	cell line	sgMsh2	87689082	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	757	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon7:c.G1217A:p.R406Q	17qE4	chr17-87672302-87723786	19.95000083	15.95000083	4	0.9	4.924223078	RARE KARYOTYPE	1	0.361109692	3	1	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr17	91088096	12A2p6	cell line	sgMsh2	91088096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	26	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon1:c.A631G:p.S211G,Nrxn1:NM_020252:exon2:c.A631G:p.S211G,Nrxn1:NM_177284:exon2:c.A631G:p.S211G"	17qE5	chr17-87745782-94740433	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9752194	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	282	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	4340650	12A2p6	cell line	sgMsh2	4340650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	68	0	0	NA	exonic	Map3k8	synonymous SNV	Map3k8:NM_007746:exon4:c.T663C:p.S221S	18qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	78	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	362	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.10E-09	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M4_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	53	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	10499920	12A2p6	cell line	sgMsh2	10499920	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	107	0	0	NA	exonic	Greb1l	nonsynonymous SNV	Greb1l:NM_001083628:exon9:c.A986G:p.H329R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	246	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	285	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9999968	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	15398152	12A2p6	cell line	sgMsh2	15398152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	224	0	0	NA	exonic	Aqp4	nonsynonymous SNV	"Aqp4:NM_001308641:exon3:c.A485G:p.D162G,Aqp4:NM_001308647:exon3:c.A485G:p.D162G,Aqp4:NM_009700:exon3:c.A551G:p.D184G,Aqp4:NM_001308642:exon4:c.A485G:p.D162G,Aqp4:NM_001308643:exon4:c.A485G:p.D162G,Aqp4:NM_001308644:exon4:c.A485G:p.D162G,Aqp4:NM_001308645:exon5:c.A485G:p.D162G,Aqp4:NM_001308646:exon6:c.A485G:p.D162G"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.6985775	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	16648572	12A2p6	cell line	sgMsh2	16648572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	163	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon4:c.T461C:p.L154P	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9978349	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	20340318	12A2p6	cell line	sgMsh2	20340318	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	273	0	0	NA	exonic	Dsg1a	nonsynonymous SNV	Dsg1a:NM_010079:exon15:c.C2447A:p.P816Q	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.75E-08	CCA	nonsynonymous	CACC	10	CACCCACCCA	NA
M4_p20	chr18	20340838	12A2p6	cell line	sgMsh2	20340838	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.258	386	0	0	NA	exonic	Dsg1a	frameshift insertion	Dsg1a:NM_010079:exon15:c.2968dupG:p.V992Gfs*10	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAG	frameshift	G	5	GGGGG	1
M4_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	139	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999625	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	20850966	12A2p6	cell line	sgMsh2	20850966	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	304	0	0	NA	exonic	Trappc8	nonsynonymous SNV	"Trappc8:NM_001361188:exon14:c.T1949A:p.L650H,Trappc8:NM_001379370:exon14:c.T1991A:p.L664H,Trappc8:NM_029491:exon14:c.T1994A:p.L665H,Trappc8:NM_177038:exon14:c.T1994A:p.L665H"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.75E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	21148201	12A2p6	cell line	sgMsh2	21148201	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	140	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1097C:p.N366T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.508836385	2	0.9956533	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	243	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	61	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	32	0	0	NA	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9823429	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	78	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9831745	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	79	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	115	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	73	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	TAC	synonymous	T	5	TTTTT	NA
M4_p20	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	119	0	0	NA	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	1	0.7391576	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	44	0	0	NA	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9910852	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	36947361	12A2p6	cell line	sgMsh2	36947361	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	313	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.T1155G:p.S385S	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.64E-09	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	331	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.58E-09	ATT	synonymous	ATT	9	ATTATTATT	NA
M4_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	37297069	12A2p6	cell line	sgMsh2	37297069	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	491	0	0	NA	exonic	Pcdhb2	synonymous SNV	Pcdhb2:NM_053127:exon1:c.C2094A:p.A698A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.272	67	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	205	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	37356949	12A2p6	cell line	sgMsh2	37356949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	139	0	0	NA	exonic	Pcdhb8	nonsynonymous SNV	Pcdhb8:NM_053133:exon1:c.T1679C:p.V560A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999625	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	82	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9989965	ATT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	96	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9995523	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	228	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	343	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.29E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	59	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9962282	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	150	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	139	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	GTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	131	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.835717	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	231	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	44395916	12A2p6	cell line	sgMsh2	44395916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	377	0	0	NA	exonic	Dcp2	nonsynonymous SNV	Dcp2:NM_027490:exon2:c.A97G:p.I33V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.04E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	216	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.4674	92	0	0	NA	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M4_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	390	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.6334617	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	46850250	12A2p6	cell line	sgMsh2	46850250	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.231	18	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon1:c.C59G:p.A20G	18qC	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9612222	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	49871624	12A2p6	cell line	sgMsh2	49871624	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	104	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon17:c.A2738G:p.Y913C	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.317338821	3	0.9981333	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	229	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	36	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9859304	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr18	54898451	12A2p6	cell line	sgMsh2	54898451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	90	0	0	NA	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon4:c.T1138C:p.S380P,Zfp608:NM_175751:exon5:c.T2416C:p.S806P"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993673	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	125	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	180	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9817344	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	58048618	12A2p6	cell line	sgMsh2	58048618	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	81	0	0	NA	exonic	Fbn2	nonsynonymous SNV	Fbn2:NM_010181:exon44:c.A5570C:p.N1857T	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998937	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	59410019	12A2p6	cell line	sgMsh2	59410019	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	219	0	0	NA	exonic	Chsy3	nonsynonymous SNV	Chsy3:NM_001081328:exon3:c.T2228C:p.V743A	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	61746824	12A2p6	cell line	sgMsh2	61746824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	145	0	0	NA	exonic	Afap1l1	nonsynonymous SNV	Afap1l1:NM_178928:exon9:c.A974G:p.E325G	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	176	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	108	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	TTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr18	67619331	12A2p6	cell line	sgMsh2	67619331	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	96	0	0	NA	exonic	Cep76	nonsynonymous SNV	"Cep76:NM_001081073:exon12:c.A1883C:p.Q628P,Cep76:NM_001357523:exon12:c.A1349C:p.Q450P"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	51	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9940294	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr18	67834813	12A2p6	cell line	sgMsh2	67834813	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	232	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon17:c.T2367G:p.G789G	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	212	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	133	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999947	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	80291678	12A2p6	cell line	sgMsh2	80291678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	120	0	0	NA	exonic	Slc66a2	nonsynonymous SNV	"Slc66a2:NM_001164420:exon5:c.G657T:p.Q219H,Slc66a2:NM_001164421:exon5:c.G657T:p.Q219H,Slc66a2:NM_001164422:exon5:c.G657T:p.Q219H,Slc66a2:NM_025861:exon6:c.G711T:p.Q237H"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998878	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	82657008	12A2p6	cell line	sgMsh2	82657008	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Zfp236	nonsynonymous SNV	"Zfp236:NM_177832:exon8:c.C1214A:p.P405H,Zfp236:NM_001374229:exon9:c.C1358A:p.P453H"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992478	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	84094509	12A2p6	cell line	sgMsh2	84094509	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	157	0	0	NA	exonic	Zadh2	nonsynonymous SNV	Zadh2:NM_146090:exon2:c.G309T:p.E103D	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999867	AGG	nonsynonymous	GGT	8	GGTGGTGG	NA
M4_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	156	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999859	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	166	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999921	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr18	89012979	12A2p6	cell line	sgMsh2	89012979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	144	0	0	NA	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1813C:p.S605P	18qE4	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	347	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	3392164	12A2p6	cell line	sgMsh2	3392164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	102	0	0	NA	exonic	Tesmin	nonsynonymous SNV	"Tesmin:NM_001039657:exon2:c.A446G:p.Q149R,Tesmin:NM_001039658:exon2:c.A446G:p.Q149R"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4262505	12A2p6	cell line	sgMsh2	4262505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	46	0	0	NA	exonic	Ssh3	nonsynonymous SNV	"Ssh3:NM_001356620:exon14:c.G1796T:p.S599I,Ssh3:NM_001374687:exon14:c.G1811T:p.S604I,Ssh3:NM_198113:exon14:c.G1799T:p.S600I"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4612474	12A2p6	cell line	sgMsh2	4612474	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	67	0	0	NA	exonic	Lrfn4	nonsynonymous SNV	Lrfn4:NM_153388:exon3:c.T1514G:p.L505R	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.661	79	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	147	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	166	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4737476	12A2p6	cell line	sgMsh2	4737476	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	86	0	0	NA	exonic	Sptbn2	frameshift deletion	Sptbn2:NM_021287:exon15:c.2813delA:p.R939Gfs*15	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	28	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M4_p20	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	272	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	519	0	0	NA	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4840880	12A2p6	cell line	sgMsh2	4840880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	313	0	0	NA	exonic	Ccdc87	nonsynonymous SNV	Ccdc87:NM_207268:exon1:c.T1399C:p.Y467H	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	156	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5607862	12A2p6	cell line	sgMsh2	5607862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	413	0	0	NA	exonic	Kat5	nonsynonymous SNV	"Kat5:NM_001362370:exon5:c.A61G:p.I21V,Kat5:NM_001199248:exon6:c.A637G:p.I213V,Kat5:NM_001199249:exon6:c.A637G:p.I213V,Kat5:NM_001362371:exon6:c.A61G:p.I21V,Kat5:NM_001199247:exon7:c.A538G:p.I180V,Kat5:NM_001362372:exon7:c.A793G:p.I265V,Kat5:NM_178637:exon8:c.A694G:p.I232V"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	239	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	26	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	72	0	0	NA	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5943565	12A2p6	cell line	sgMsh2	5943565	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.135	53	0	0	NA	exonic	Pola2	nonsynonymous SNV	"Pola2:NM_001164057:exon14:c.A1343C:p.E448A,Pola2:NM_008893:exon14:c.A1343C:p.E448A"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	45	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5985928	12A2p6	cell line	sgMsh2	5985928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	118	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon1:c.A213G:p.I71M	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	5986075	12A2p6	cell line	sgMsh2	5986075	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	97	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon1:c.C66A:p.A22A	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr19	6050339	12A2p6	cell line	sgMsh2	6050339	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	180	0	0	NA	exonic	Syvn1	frameshift deletion	"Syvn1:NM_001164709:exon10:c.839delC:p.E282Rfs*17,Syvn1:NM_028769:exon10:c.839delC:p.E282Rfs*17"	19qA	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4_p20	chr19	6115532	12A2p6	cell line	sgMsh2	6115532	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	87	0	0	NA	exonic	Naaladl1	nonsynonymous SNV	Naaladl1:NM_001009546:exon18:c.C2215A:p.L739M	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.8593748	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	30	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.980226	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	92	0	0	NA	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9967226	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	136	0	0	NA	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9861747	TGC	synonymous	NA	NA	NA	NA
M4_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	98	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9993536	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	6976602	12A2p6	cell line	sgMsh2	6976602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	308	0	0	NA	exonic	Ppp1r14b	nonsynonymous SNV	Ppp1r14b:NM_008889:exon2:c.A317G:p.D106G	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	3.51E-08	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	8764541	12A2p6	cell line	sgMsh2	8764541	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	376	0	0	NA	exonic	Nxf1	nonsynonymous SNV	"Nxf1:NM_001276704:exon9:c.G838A:p.D280N,Nxf1:NM_016813:exon9:c.G838A:p.D280N"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.640149	2	2.81E-09	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	504	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	72	0	0	NA	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr19	8825025	12A2p6	cell line	sgMsh2	8825025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	440	0	0	NA	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon7:c.T1255C:p.F419L	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9986428	CTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	97	0	0	NA	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9995774	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	8928628	12A2p6	cell line	sgMsh2	8928628	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	215	0	0	NA	exonic	Rom1	nonsynonymous SNV	Rom1:NM_009073:exon1:c.G546T:p.W182C	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	2	0.5630217	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	8940646	12A2p6	cell line	sgMsh2	8940646	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	81	0	0	NA	exonic	Eml3	synonymous SNV	"Eml3:NM_001374671:exon20:c.C2325A:p.T775T,Eml3:NM_144872:exon20:c.C2328A:p.T776T"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	5.63E-07	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	37	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9867087	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	371	0	0	NA	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.579964051	2	1.01E-09	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	273	0	0	NA	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9999651	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	10593469	12A2p6	cell line	sgMsh2	10593469	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	219	0	0	NA	exonic	Tkfc	nonsynonymous SNV	Tkfc:NM_145496:exon14:c.G1446A:p.M482I	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9999463	GCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	51	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	1	0.7413122	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	10860377	12A2p6	cell line	sgMsh2	10860377	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	20	0	0	NA	exonic	Tmem132a	nonsynonymous SNV	"Tmem132a:NM_001378918:exon9:c.C1571T:p.A524V,Tmem132a:NM_133804:exon9:c.C1568T:p.A523V"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9653132	AGC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M4_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	199	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	171	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9999941	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr19	12651313	12A2p6	cell line	sgMsh2	12651313	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	303	0	0	NA	exonic	Glyat	nonsynonymous SNV	Glyat:NM_145935:exon6:c.G573T:p.E191D	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.6698316	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	12675042	12A2p6	cell line	sgMsh2	12675042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	421	0	0	NA	exonic	Olfr1442	nonsynonymous SNV	Olfr1442:NM_146697:exon1:c.T836G:p.V279G	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9846746	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	12890381	12A2p6	cell line	sgMsh2	12890381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	813	0	0	NA	exonic	Olfr1446	synonymous SNV	Olfr1446:NM_146704:exon1:c.T195C:p.G65G	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.640149	2	1	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	692	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.9999992	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	653	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.634677641	2	1	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr19	12999149	12A2p6	cell line	sgMsh2	12999149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	515	0	0	NA	exonic	Olfr1451	synonymous SNV	Olfr1451:NM_146705:exon1:c.T162C:p.H54H	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9984055	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.145	364	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	NA	NA	CTA	frameshift	NA	NA	NA	-1
M4_p20	chr19	13146604	12A2p6	cell line	sgMsh2	13146604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	318	0	0	NA	exonic	Olfr1459	synonymous SNV	Olfr1459:NM_146689:exon1:c.C54T:p.D18D	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.999997	AGT	synonymous	NA	NA	NA	NA
M4_p20	chr19	13165670	12A2p6	cell line	sgMsh2	13165670	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	160	0	0	NA	exonic	Olfr1461	nonsynonymous SNV	Olfr1461:NM_146302:exon1:c.T655C:p.Y219H	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999888	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	865	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	1.00E-09	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M4_p20	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	854	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9979939	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	301	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	529	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	7.48E-09	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	14466592	12A2p6	cell line	sgMsh2	14466592	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	96	0	0	NA	exonic	Tle4	nonsynonymous SNV	"Tle4:NM_001302950:exon10:c.C821A:p.S274Y,Tle4:NM_001302947:exon11:c.C896A:p.S299Y,Tle4:NM_001302951:exon11:c.C890A:p.S297Y,Tle4:NM_011600:exon11:c.C893A:p.S298Y"	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9701275	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	274	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.65E-08	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	367	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.07E-09	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr19	18679119	12A2p6	cell line	sgMsh2	18679119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	260	0	0	NA	exonic	Carnmt1	nonsynonymous SNV	"Carnmt1:NM_001377051:exon3:c.A280G:p.M94V,Carnmt1:NM_001377052:exon3:c.A259G:p.M87V,Carnmt1:NM_001377053:exon3:c.A415G:p.M139V,Carnmt1:NM_001377054:exon3:c.A280G:p.M94V,Carnmt1:NM_001377055:exon3:c.A259G:p.M87V,Carnmt1:NM_026120:exon3:c.A415G:p.M139V"	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9997945	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	18690332	12A2p6	cell line	sgMsh2	18690332	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	95	0	0	NA	exonic	Carnmt1	frameshift deletion	"Carnmt1:NM_001377051:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377052:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_001377053:exon4:c.666delT:p.F224Lfs*58,Carnmt1:NM_001377054:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377055:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_026120:exon4:c.666delT:p.F224Lfs*58"	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	403	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9999985	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	23210495	12A2p6	cell line	sgMsh2	23210495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	437	0	0	NA	exonic	Smc5	nonsynonymous SNV	"Smc5:NM_001252685:exon22:c.A2728G:p.T910A,Smc5:NM_153808:exon22:c.A2956G:p.T986A,Smc5:NM_001252684:exon23:c.A2998G:p.T1000A"	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.443180077	3	0.9281623	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	25162947	12A2p6	cell line	sgMsh2	25162947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	70	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon31:c.A3850G:p.K1284E	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9706853	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	25422280	12A2p6	cell line	sgMsh2	25422280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	202	0	0	NA	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon6:c.G2853A:p.M951I,Kank1:NM_181404:exon6:c.G2853A:p.M951I"	19qB	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999999	TGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	26651688	12A2p6	cell line	sgMsh2	26651688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	108	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon8:c.A1520G:p.E507G	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997759	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	26720882	12A2p6	cell line	sgMsh2	26720882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	76	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon27:c.A3949G:p.R1317G	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	375	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9999755	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	319	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.16E-09	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	29599989	12A2p6	cell line	sgMsh2	29599989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	236	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon22:c.A3292G:p.T1098A	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.930196	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	205	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999992	TCG	synonymous	NA	NA	NA	NA
M4_p20	chr19	29716475	12A2p6	cell line	sgMsh2	29716475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	306	0	0	NA	exonic	9930021J03Rik	nonsynonymous SNV	9930021J03Rik:NM_172836:exon8:c.A5818G:p.N1940D	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.9558416	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	664	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr19	32057813	12A2p6	cell line	sgMsh2	32057813	G	-	Deletion	Mutect2;Vardict	2	0.188	290	0	0	NA	exonic	Asah2	frameshift deletion	Asah2:NM_018830:exon5:c.111delC:p.I38Lfs*58	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M4_p20	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	528	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9994398	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	490	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	626	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.9999713	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	176	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M4_p20	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	142	0	0	NA	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.8760914	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr19	34952885	12A2p6	cell line	sgMsh2	34952885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	146	0	0	NA	exonic	Kif20b	synonymous SNV	"Kif20b:NM_001362434:exon21:c.T3669C:p.R1223R,Kif20b:NM_183046:exon21:c.T3789C:p.R1263R"	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.448651436	2	0.6948779	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr19	34974516	12A2p6	cell line	sgMsh2	34974516	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	194	0	0	NA	exonic	Kif20b	synonymous SNV	"Kif20b:NM_001362434:exon31:c.A5073G:p.K1691K,Kif20b:NM_183046:exon31:c.A5193G:p.K1731K"	19qC1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.8509596	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	150	0	0	NA	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9999801	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr19	36988164	12A2p6	cell line	sgMsh2	36988164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	305	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon21:c.T3035C:p.L1012P	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.60E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	153	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9999833	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	412	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9999735	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	38043240	12A2p6	cell line	sgMsh2	38043240	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	179	0	0	NA	exonic	Myof	frameshift deletion	"Myof:NM_001099634:exon1:c.84delT:p.F28Lfs*26,Myof:NM_001302140:exon1:c.84delT:p.F28Lfs*26"	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr19	38097601	12A2p6	cell line	sgMsh2	38097601	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	24	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.C475A:p.L159M	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9722712	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	390	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	4	1	1	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	277	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	294	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.90E-09	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr19	42105421	12A2p6	cell line	sgMsh2	42105421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	174	0	0	NA	exonic	Pi4k2a	nonsynonymous SNV	Pi4k2a:NM_145501:exon4:c.A860G:p.N287S	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.996572	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	42323779	12A2p6	cell line	sgMsh2	42323779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	162	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon4:c.A476G:p.D159G,Crtac1:NM_001356589:exon4:c.A494G:p.D165G,Crtac1:NM_145123:exon4:c.A494G:p.D165G"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999901	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	85	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	43691049	12A2p6	cell line	sgMsh2	43691049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	192	0	0	NA	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon3:c.T40C:p.W14R	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9999302	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	65	0	0	NA	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9836807	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	43901935	12A2p6	cell line	sgMsh2	43901935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	196	0	0	NA	exonic	Dnmbp	synonymous SNV	Dnmbp:NM_028029:exon4:c.A1392G:p.Q464Q	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	2	0.9227206	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr19	44973162	12A2p6	cell line	sgMsh2	44973162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	332	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon16:c.A3119G:p.Q1040R,Slf2:NM_172638:exon16:c.A1184G:p.Q395R"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9999355	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	774	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	1.37E-09	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	126	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9999207	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	123	0	0	NA	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.991195	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	61	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	70	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9979968	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	46515460	12A2p6	cell line	sgMsh2	46515460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	178	0	0	NA	exonic	Trim8	nonsynonymous SNV	Trim8:NM_053100:exon6:c.C1450T:p.H484Y	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.9946795	CCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	193	0	0	NA	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.530721821	2	0.9998855	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	47256825	12A2p6	cell line	sgMsh2	47256825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	49	0	0	NA	exonic	Neurl1a	nonsynonymous SNV	"Neurl1a:NM_001163480:exon5:c.T1402C:p.C468R,Neurl1a:NM_021360:exon5:c.T1453C:p.C485R"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	132	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9767075	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	389	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9977345	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	47637336	12A2p6	cell line	sgMsh2	47637336	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	228	0	0	NA	exonic	Slk	frameshift deletion	"Slk:NM_001164639:exon15:c.3160delA:p.S1056Vfs*1,Slk:NM_009289:exon16:c.3253delA:p.S1087Vfs*1"	19qD1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	117	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	1	0.891035	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	271	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.618263564	2	0.9999999	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr19	53381278	12A2p6	cell line	sgMsh2	53381278	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	89	0	0	NA	exonic	Smndc1	frameshift deletion	"Smndc1:NM_001356986:exon5:c.542delT:p.F181Sfs*13,Smndc1:NM_172429:exon5:c.542delT:p.F181Sfs*13"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	NA	NA	GAA	frameshift	TGT	8	TGTTGTTG	-1
M4_p20	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	256	0	0	NA	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.49E-08	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	55217338	12A2p6	cell line	sgMsh2	55217338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	224	0	0	NA	exonic	Gucy2g	nonsynonymous SNV	"Gucy2g:NM_001371012:exon1:c.T166C:p.S56P,Gucy2g:NM_001081076:exon13:c.T2089C:p.S697P"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.765990257	2	0.8753414	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	227	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.9999061	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	56800928	12A2p6	cell line	sgMsh2	56800928	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	497	0	0	NA	exonic	Ccdc186	synonymous SNV	Ccdc186:NM_170757:exon9:c.G1554A:p.R518R	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.9276741	TCC	synonymous	NA	NA	NA	NA
M4_p20	chr19	56908916	12A2p6	cell line	sgMsh2	56908916	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	178	0	0	NA	exonic	Vwa2	nonsynonymous SNV	Vwa2:NM_172840:exon12:c.G1652T:p.S551I	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	2	0.8501709	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	108	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	2	0.7943986	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M4_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	292	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.656563077	2	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	58827590	12A2p6	cell line	sgMsh2	58827590	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	244	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon3:c.T220G:p.F74V,Hspa12a:NM_001327998:exon4:c.T274G:p.F92V"	19qD2	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.995301	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	290	0	0	NA	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	7.18E-09	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	147	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999764	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	4935991	12A2p6	cell line	sgMsh2	4935991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	272	0	0	NA	exonic	Phyh	nonsynonymous SNV	Phyh:NM_010726:exon7:c.A701G:p.H234R	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.84E-08	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	4992103	12A2p6	cell line	sgMsh2	4992103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	140	0	0	NA	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon19:c.A2566G:p.M856V,Mcm10:NM_027290:exon19:c.A2566G:p.M856V"	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999646	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	10404486	12A2p6	cell line	sgMsh2	10404486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	188	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon5:c.G241A:p.V81M,Sfmbt2:NM_001198809:exon5:c.G241A:p.V81M,Sfmbt2:NM_001369078:exon5:c.G241A:p.V81M,Sfmbt2:NM_177386:exon6:c.G241A:p.V81M"	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999978	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	283	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-08	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	10575343	12A2p6	cell line	sgMsh2	10575343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon18:c.G1816A:p.G606S,Sfmbt2:NM_001369078:exon18:c.G1816A:p.G606S,Sfmbt2:NM_177386:exon19:c.G1816A:p.G606S"	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999916	GGG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	500	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	13446067	12A2p6	cell line	sgMsh2	13446067	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	193	0	0	NA	exonic	Cubn	synonymous SNV	Cubn:NM_001081084:exon19:c.T2526C:p.C842C	2qA1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999983	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	104	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr2	16669851	12A2p6	cell line	sgMsh2	16669851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	281	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon9:c.T1008C:p.P336P	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.14E-08	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	215	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	23545181	12A2p6	cell line	sgMsh2	23545181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	97	0	0	NA	exonic	Spopl	nonsynonymous SNV	Spopl:NM_029773:exon3:c.T172C:p.S58P	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995774	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	23545211	12A2p6	cell line	sgMsh2	23545211	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	121	0	0	NA	exonic	Spopl	frameshift deletion	Spopl:NM_029773:exon3:c.142delA:p.M48Wfs*4	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999207	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	24802031	12A2p6	cell line	sgMsh2	24802031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	85	0	0	NA	exonic	Ehmt1	nonsynonymous SNV	"Ehmt1:NM_001109686:exon23:c.T3286G:p.F1096V,Ehmt1:NM_001109687:exon23:c.T3301G:p.F1101V,Ehmt1:NM_001012518:exon24:c.T3445G:p.F1149V,Ehmt1:NM_172545:exon24:c.T3424G:p.F1142V"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	81	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	9.52E-06	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	109	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997885	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	25011619	12A2p6	cell line	sgMsh2	25011619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	216	0	0	NA	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon16:c.G1656A:p.Q552Q	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr2	25082999	12A2p6	cell line	sgMsh2	25082999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	42	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.G316A:p.A106T	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.009994125	GGC	nonsynonymous	GGA	8	GGAGGAGG	NA
M4_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	68	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9977524	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	25442390	12A2p6	cell line	sgMsh2	25442390	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	100	0	0	NA	exonic	Abca2	frameshift deletion	"Abca2:NM_001368624:exon27:c.4437delT:p.E1480Rfs*49,Abca2:NM_007379:exon27:c.4434delT:p.E1479Rfs*49"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTG	frameshift	NA	NA	NA	-1
M4_p20	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	59	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9962282	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	199	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	26635710	12A2p6	cell line	sgMsh2	26635710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	60	0	0	NA	exonic	Dipk1b	nonsynonymous SNV	Dipk1b:NM_019833:exon5:c.T655C:p.S219P	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9964389	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	26912143	12A2p6	cell line	sgMsh2	26912143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	120	0	0	NA	exonic	Rpl7a	synonymous SNV	Rpl7a:NM_013721:exon4:c.A399G:p.P133P	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998878	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	26926871	12A2p6	cell line	sgMsh2	26926871	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	171	0	0	NA	exonic	Surf4	nonsynonymous SNV	Surf4:NM_011512:exon2:c.T133C:p.W45R	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.437708718	3	0.5916629	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	26951726	12A2p6	cell line	sgMsh2	26951726	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	140	0	0	NA	exonic	Stkld1	nonsynonymous SNV	"Stkld1:NM_001379464:exon15:c.T1504G:p.L502V,Stkld1:NM_001379463:exon16:c.T1633G:p.L545V,Stkld1:NM_198628:exon16:c.T1609G:p.L537V"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999646	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	27171316	12A2p6	cell line	sgMsh2	27171316	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	141	0	0	NA	exonic	Dbh	nonsynonymous SNV	Dbh:NM_138942:exon4:c.A761C:p.E254A	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999666	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	140	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999646	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	330	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.61E-09	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	29145392	12A2p6	cell line	sgMsh2	29145392	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	86	0	0	NA	exonic	Setx	frameshift deletion	Setx:NM_198033:exon10:c.1888delA:p.N632Tfs*16	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M4_p20	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	86	0	0	NA	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992032	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M4_p20	chr2	30032472	12A2p6	cell line	sgMsh2	30032472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	87	0	0	NA	exonic	Wdr34	nonsynonymous SNV	Wdr34:NM_001008498:exon7:c.G1147T:p.A383S	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	66	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9974782	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	54	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9949735	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	30956900	12A2p6	cell line	sgMsh2	30956900	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	68	0	0	NA	exonic	Tor1b	nonsynonymous SNV	Tor1b:NM_133673:exon5:c.G858A:p.M286I	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9977524	TGT	nonsynonymous	TG	8	TGTGTGTG	NA
M4_p20	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	339	0	0	NA	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.37E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	31454882	12A2p6	cell line	sgMsh2	31454882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	45	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon92:c.T14005C:p.C4669R	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9915808	CTG	nonsynonymous	CTCCTG	13	CTCCTGCTCCTGC	NA
M4_p20	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	237	0	0	NA	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	278	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.33E-08	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	105	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997336	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	32647017	12A2p6	cell line	sgMsh2	32647017	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	148	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon1:c.A60G:p.V20V,Eng:NM_001146350:exon1:c.A60G:p.V20V,Eng:NM_007932:exon1:c.A60G:p.V20V"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.350166974	3	0.9991718	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	152	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	2	0.9653886	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	76	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	255	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.75E-08	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	76	0	0	NA	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9985821	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998937	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M4_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	36230677	12A2p6	cell line	sgMsh2	36230677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	exonic	Ptgs1	nonsynonymous SNV	Ptgs1:NM_008969:exon2:c.T17C:p.L6P	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	36860016	12A2p6	cell line	sgMsh2	36860016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	509	0	0	NA	exonic	Olfr351	nonsynonymous SNV	Olfr351:NM_146942:exon1:c.T331G:p.F111V	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	162	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	221	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	40697525	12A2p6	cell line	sgMsh2	40697525	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	201	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon77:c.A11717C:p.N3906T	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.238	255	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M4_p20	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	263	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9998803	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M4_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	65	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9973289	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	115	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	166	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999921	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	47	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr2	43679951	12A2p6	cell line	sgMsh2	43679951	T	-	Deletion	Mutect2;Vardict	2	0.205	41	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon13:c.1244delT:p.F416Lfs*3,Kynu:NM_027552:exon13:c.1244delT:p.F416Lfs*3"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr2	43780782	12A2p6	cell line	sgMsh2	43780782	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	198	0	0	NA	exonic	Arhgap15	nonsynonymous SNV	"Arhgap15:NM_001301831:exon2:c.G177T:p.K59N,Arhgap15:NM_153820:exon2:c.G177T:p.K59N"	2qB	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	48909281	12A2p6	cell line	sgMsh2	48909281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	160	0	0	NA	exonic	Orc4	synonymous SNV	"Orc4:NM_001355296:exon13:c.A1098G:p.K366K,Orc4:NM_011958:exon13:c.A1098G:p.K366K"	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999888	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	141	0	0	NA	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999666	AAA	synonymous	A	5	AAAAA	NA
M4_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	320	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.09E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	53126864	12A2p6	cell line	sgMsh2	53126864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	132	0	0	NA	exonic	Fmnl2	synonymous SNV	Fmnl2:NM_172409:exon25:c.T3054C:p.H1018H	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999439	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	56	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.985667	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	192	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999982	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	59310284	12A2p6	cell line	sgMsh2	59310284	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	59	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon7:c.G889T:p.G297C,Pkp4:NM_001362999:exon7:c.G310T:p.G104C,Pkp4:NM_001362990:exon8:c.G1327T:p.G443C,Pkp4:NM_001362991:exon8:c.G1327T:p.G443C,Pkp4:NM_001362997:exon8:c.G310T:p.G104C,Pkp4:NM_026361:exon8:c.G1333T:p.G445C,Pkp4:NM_175464:exon8:c.G1333T:p.G445C,Pkp4:NM_001362993:exon9:c.G889T:p.G297C,Pkp4:NM_001362994:exon9:c.G889T:p.G297C,Pkp4:NM_001362995:exon9:c.G889T:p.G297C,Pkp4:NM_001362996:exon9:c.G889T:p.G297C,Pkp4:NM_001362998:exon9:c.G310T:p.G104C"	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9962282	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	77	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	61807334	12A2p6	cell line	sgMsh2	61807334	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	152	0	0	NA	exonic	Tbr1	nonsynonymous SNV	Tbr1:NM_009322:exon4:c.T1025C:p.V342A	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999823	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	382	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.990315974	1	1.10E-09	ACT	synonymous	NA	NA	NA	NA
M4_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	105	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M4_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	185	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999974	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.18	153	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999645	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Vardict	2	0.183	151	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M4_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	352	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	377	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.04E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	69439848	12A2p6	cell line	sgMsh2	69439848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	310	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon67:c.A12391G:p.N4131D	2qC2	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.95E-09	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	334	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.49E-09	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	72226075	12A2p6	cell line	sgMsh2	72226075	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	203	0	0	NA	exonic	Rapgef4	frameshift deletion	"Rapgef4:NM_001355478:exon17:c.1520delA:p.E507Gfs*19,Rapgef4:NM_001204166:exon18:c.1574delA:p.E525Gfs*19,Rapgef4:NM_019688:exon20:c.1952delA:p.E651Gfs*19,Rapgef4:NM_001204165:exon21:c.2006delA:p.E669Gfs*19"	2qC3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M4_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	123	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr2	76650615	12A2p6	cell line	sgMsh2	76650615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	150	0	0	NA	exonic	Pjvk	nonsynonymous SNV	Pjvk:NM_001080711:exon1:c.A194G:p.D65G	2qC3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	76768020	12A2p6	cell line	sgMsh2	76768020	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	348	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon132:c.A33567G:p.P11189P,Ttn:NM_011652:exon253:c.A53310G:p.P17770P,Ttn:NM_001385708:exon290:c.A59142G:p.P19714P"	2qC3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.497893667	2	0.9998281	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	76810347	12A2p6	cell line	sgMsh2	76810347	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	211	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.G16075A:p.V5359M,Ttn:NM_011652:exon184:c.G35818A:p.V11940M,Ttn:NM_001385708:exon221:c.G41650A:p.V13884M"	2qC3	chr2-3197272-76824575	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	76909571	12A2p6	cell line	sgMsh2	76909571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	102	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon45:c.T10623C:p.Y3541Y,Ttn:NM_001385708:exon47:c.T11136C:p.Y3712Y"	2qC3	chr2-76867311-82253895	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996833	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	230	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-82253895	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	301	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-76867311-82253895	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	4.27E-09	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	83	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-76867311-82253895	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9953705	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	827	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.771461615	2	0.9999906	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M4_p20	chr2	82993973	12A2p6	cell line	sgMsh2	82993974	AG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	270	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon17:c.20043_20044del:p.R6683Tfs*5	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	NA	NA	AAG	frameshift	A	5	AAAAA	-2
M4_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	352	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	3.15E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	83920743	12A2p6	cell line	sgMsh2	83920743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	380	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon6:c.A751G:p.T251A	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9999154	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	84818277	12A2p6	cell line	sgMsh2	84818277	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	89	0	0	NA	exonic	Smtnl1	nonsynonymous SNV	Smtnl1:NM_024230:exon2:c.T632G:p.V211G	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993297	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M4_p20	chr2	84956385	12A2p6	cell line	sgMsh2	84956385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	340	0	0	NA	exonic	Slc43a3	nonsynonymous SNV	Slc43a3:NM_021398:exon12:c.A1409G:p.Y470C	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.35E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	265	0	0	NA	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.530721821	2	0.9999922	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	85041116	12A2p6	cell line	sgMsh2	85041116	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	273	0	0	NA	exonic	Ssrp1	nonsynonymous SNV	"Ssrp1:NM_001136081:exon8:c.T881C:p.V294A,Ssrp1:NM_182990:exon8:c.T881C:p.V294A"	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.295453385	3	1.13E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	85413972	12A2p6	cell line	sgMsh2	85413972	T	-	Deletion	Mutect2;Vardict	2	0.134	167	0	0	NA	exonic	Olfr993	frameshift deletion	Olfr993:NM_146435:exon1:c.906delA:p.K302Nfs*1	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr2	85430435	12A2p6	cell line	sgMsh2	85430435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	612	0	0	NA	exonic	Olfr994	synonymous SNV	Olfr994:NM_146433:exon1:c.C393T:p.R131R	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	2	1	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	387	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9999906	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	85647924	12A2p6	cell line	sgMsh2	85647924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	581	0	0	NA	exonic	Olfr1002	synonymous SNV	Olfr1002:NM_146573:exon1:c.T396C:p.Y132Y	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	1.01E-09	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	627	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	1.97E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	461	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.0989186	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	311	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.9564596	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	85887092	12A2p6	cell line	sgMsh2	85887092	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	1165	0	0	NA	exonic	Olfr1023	synonymous SNV	Olfr1023:NM_146587:exon1:c.C291T:p.C97C	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	1.00E-09	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr2	86084932	12A2p6	cell line	sgMsh2	86084932	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	713	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A844G:p.I282V	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.147726692	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	579	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86356129	12A2p6	cell line	sgMsh2	86356129	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	489	0	0	NA	exonic	Olfr1056	nonsynonymous SNV	Olfr1056:NM_147018:exon1:c.C252A:p.S84R	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.9737701	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	442	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr2	86422727	12A2p6	cell line	sgMsh2	86422727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	95	0	0	NA	exonic	Olfr1062	stoploss	Olfr1062:NM_147078:exon1:c.A948G:p.X316W	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9580671	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86594420	12A2p6	cell line	sgMsh2	86594420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	669	0	0	NA	exonic	Olfr1082	nonsynonymous SNV	Olfr1082:NM_207674:exon2:c.T407C:p.M136T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9998644	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86806874	12A2p6	cell line	sgMsh2	86806874	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	336	0	0	NA	exonic	Olfr141	stopgain	Olfr141:NM_181818:exon1:c.G124T:p.G42X	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9993563	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	86806924	12A2p6	cell line	sgMsh2	86806924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	504	0	0	NA	exonic	Olfr141	nonsynonymous SNV	Olfr141:NM_181818:exon1:c.T74C:p.L25P	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	229	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	AAA	nonsynonymous	A	6	AAAAAA	NA
M4_p20	chr2	87149865	12A2p6	cell line	sgMsh2	87149865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	209	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.C795T:p.S265S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	429	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	2	0.9996683	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	435	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87491040	12A2p6	cell line	sgMsh2	87491040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	544	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.A650G:p.N217S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87607864	12A2p6	cell line	sgMsh2	87607864	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	708	0	0	NA	exonic	Olfr1130	nonsynonymous SNV	Olfr1130:NM_146838:exon2:c.A475G:p.I159V	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	1	1.02E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	436	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9857086	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Vardict	2	0.143	410	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	NA	NA	CAT	frameshift	NA	NA	NA	1
M4_p20	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	610	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	354	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	1.19E-08	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	541	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	1.34E-08	TAC	synonymous	TACT	8	TACTTACT	NA
M4_p20	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	410	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	2	0.7300943	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	310	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.656563077	2	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87802956	12A2p6	cell line	sgMsh2	87802956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	526	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.T566C:p.L189S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.563549974	2	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	490	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.738633462	2	0.9999864	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87833126	12A2p6	cell line	sgMsh2	87833126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	310	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T86C:p.L29P	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.95E-09	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	651	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87974216	12A2p6	cell line	sgMsh2	87974216	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	722	0	0	NA	exonic	Olfr74	nonsynonymous SNV	Olfr74:NM_054091:exon1:c.T448C:p.Y150H	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.722219385	2	1.51E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	356	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.999958	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	585	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	1	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88025662	12A2p6	cell line	sgMsh2	88025662	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	48	0	0	NA	exonic	Olfr1161	frameshift deletion	Olfr1161:NM_146848:exon1:c.939delC:p.H315Ifs*15	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	978	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9988827	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	489	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	2	0.6760179	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	88340488	12A2p6	cell line	sgMsh2	88340488	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	151	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A922G:p.M308V	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.284510667	3	0.9999968	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88391771	12A2p6	cell line	sgMsh2	88391771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	492	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.T523C:p.Y175H	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.815232487	1	0.7305122	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	270	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.06E-08	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M4_p20	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	170	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.58543541	2	0.9999805	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88525797	12A2p6	cell line	sgMsh2	88525797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	470	0	0	NA	exonic	Olfr1186	synonymous SNV	Olfr1186:NM_146530:exon1:c.T213C:p.S71S	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	9.28E-09	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr2	88683277	12A2p6	cell line	sgMsh2	88683277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	420	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.A454G:p.I152V	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	4.86E-08	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	346	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.24E-09	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	560	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.999999	CTA	synonymous	ACT	8	ACTACTAC	NA
M4_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	567	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr2	88767635	12A2p6	cell line	sgMsh2	88767635	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	544	0	0	NA	exonic	Olfr1200	nonsynonymous SNV	Olfr1200:NM_001005227:exon1:c.T679G:p.S227A	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9987456	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88817843	12A2p6	cell line	sgMsh2	88817843	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	572	0	0	NA	exonic	Olfr1202	nonsynonymous SNV	Olfr1202:NM_146462:exon2:c.G671T:p.R224M	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	88831634	12A2p6	cell line	sgMsh2	88831634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	643	0	0	NA	exonic	Olfr1205	synonymous SNV	Olfr1205:NM_146896:exon2:c.T516C:p.I172I	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.765990257	2	0.9999362	TTG	synonymous	TGAT	8	TGATTGAT	NA
M4_p20	chr2	88958779	12A2p6	cell line	sgMsh2	88958779	T	-	Deletion	Mutect2;Vardict	2	0.033	524	0	0	NA	exonic	Olfr1212	frameshift deletion	Olfr1212:NM_207140:exon1:c.312delT:p.F105Sfs*6	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.180554846	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	397	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	TAA	synonymous	NA	NA	NA	NA
M4_p20	chr2	89013973	12A2p6	cell line	sgMsh2	89013973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	415	0	0	NA	exonic	Olfr1216	synonymous SNV	Olfr1216:NM_146893:exon1:c.A90G:p.L30L	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr2	89054702	12A2p6	cell line	sgMsh2	89054702	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	580	0	0	NA	exonic	Olfr1218	synonymous SNV	Olfr1218:NM_146818:exon1:c.C723A:p.A241A	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9999998	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr2	89074615	12A2p6	cell line	sgMsh2	89074615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	769	0	0	NA	exonic	Olfr1219	nonsynonymous SNV	Olfr1219:NM_146899:exon1:c.A475G:p.I159V	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9998053	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89248975	12A2p6	cell line	sgMsh2	89248975	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	670	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.A718G:p.S240G	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	1.03E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89282603	12A2p6	cell line	sgMsh2	89282603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	698	0	0	NA	exonic	Olfr1229	nonsynonymous SNV	Olfr1229:NM_001011761:exon1:c.A529G:p.I177V	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	1	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	260	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	2	0.9992811	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	466	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	2	1.02E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89575060	12A2p6	cell line	sgMsh2	89575060	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	451	0	0	NA	exonic	Olfr1245	nonsynonymous SNV	Olfr1245:NM_146788:exon1:c.C665A:p.S222Y	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	2	2.99E-08	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	412	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	2	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	89930111	12A2p6	cell line	sgMsh2	89930111	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	497	0	0	NA	exonic	Olfr1258	frameshift deletion	Olfr1258:NM_146978:exon1:c.301delG:p.E102Sfs*13	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	NA	NA	TGG	frameshift	NA	NA	NA	-1
M4_p20	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	310	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9971116	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M4_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	534	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	91190197	12A2p6	cell line	sgMsh2	91190197	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	403	0	0	NA	exonic	Nr1h3	nonsynonymous SNV	"Nr1h3:NM_001177730:exon7:c.T970C:p.F324L,Nr1h3:NM_001355279:exon7:c.T970C:p.F324L,Nr1h3:NM_013839:exon7:c.T970C:p.F324L"	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.683919872	2	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	293	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	91688761	12A2p6	cell line	sgMsh2	91688761	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	175	0	0	NA	exonic	Atg13	nonsynonymous SNV	"Atg13:NM_001355416:exon6:c.T338A:p.V113D,Atg13:NM_001355417:exon6:c.T338A:p.V113D,Atg13:NM_001355418:exon6:c.T338A:p.V113D,Atg13:NM_001355419:exon6:c.T338A:p.V113D,Atg13:NM_001355420:exon6:c.T338A:p.V113D,Atg13:NM_001355421:exon6:c.T338A:p.V113D,Atg13:NM_145528:exon6:c.T338A:p.V113D"	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9999613	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	81	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82255917-97631195	7	5	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9843388	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	101688487	12A2p6	cell line	sgMsh2	101688487	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	283	0	0	NA	exonic	Traf6	nonsynonymous SNV	"Traf6:NM_001303273:exon3:c.T320C:p.V107A,Traf6:NM_009424:exon4:c.T320C:p.V107A"	2qE2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-08	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	404	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	105393690	12A2p6	cell line	sgMsh2	105393690	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	113	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon3:c.A508C:p.K170Q	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999832	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	285	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	9.24E-09	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111316320	12A2p6	cell line	sgMsh2	111316320	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.203	522	0	0	NA	exonic	Olfr1280	synonymous SNV	Olfr1280:NM_146908:exon1:c.T840C:p.P280P	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.234	1352	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	698	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	447	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M4_p20	chr2	111449882	12A2p6	cell line	sgMsh2	111449882	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	802	0	0	NA	exonic	Olfr1287	synonymous SNV	Olfr1287:NM_001011773:exon1:c.T741G:p.V247V	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	111450013	12A2p6	cell line	sgMsh2	111450013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	424	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.A872G:p.N291S	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	316	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.38E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	399	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	111489545	12A2p6	cell line	sgMsh2	111489545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	469	0	0	NA	exonic	Olfr1290	synonymous SNV	"Olfr1290:NM_001278787:exon2:c.A612G:p.G204G,Olfr1290:NM_001278788:exon2:c.A612G:p.G204G,Olfr1290:NM_146262:exon3:c.A612G:p.G204G"	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	287	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	8.34E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	405	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	111960825	12A2p6	cell line	sgMsh2	111960825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	384	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.T247C:p.Y83H	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.03E-09	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	129	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	217	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	173	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999947	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	118279465	12A2p6	cell line	sgMsh2	118279465	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	74	0	0	NA	exonic	Gpr176	nonsynonymous SNV	Gpr176:NM_201367:exon3:c.G1312T:p.A438S	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	106	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	47	0	0	NA	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	40	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9887973	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	117	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	75	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.815232487	1	0.8801189	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	47	0	0	NA	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	52	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9943622	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	108	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M4_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	124	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	300	0	0	NA	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.47E-09	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	150	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999801	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	197	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999987	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	123	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	121236290	12A2p6	cell line	sgMsh2	121236290	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	99	0	0	NA	exonic	Trp53bp1	frameshift deletion	"Trp53bp1:NM_001290830:exon12:c.1954delT:p.S652Rfs*4,Trp53bp1:NM_013735:exon12:c.1954delT:p.S652Rfs*4"	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4_p20	chr2	121321665	12A2p6	cell line	sgMsh2	121321665	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon28:c.G3360T:p.Q1120H	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996644	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.308	28	0	0	NA	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9778608	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	121439942	12A2p6	cell line	sgMsh2	121439942	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	207	0	0	NA	exonic	Ell3	nonsynonymous SNV	Ell3:NM_145973:exon9:c.G938A:p.R313H	2qE5	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.169612128	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	125312913	12A2p6	cell line	sgMsh2	125312913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	338	0	0	NA	exonic	Fbn1	nonsynonymous SNV	Fbn1:NM_007993:exon59:c.T7262C:p.V2421A	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.39E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	125314635	12A2p6	cell line	sgMsh2	125314635	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	73	0	0	NA	exonic	Fbn1	nonsynonymous SNV	Fbn1:NM_007993:exon58:c.A7169C:p.K2390T	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9983146	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	125363675	12A2p6	cell line	sgMsh2	125363675	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	96	0	0	NA	exonic	Fbn1	frameshift deletion	Fbn1:NM_007993:exon27:c.3280delG:p.D1094Tfs*14	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	121	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998941	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	116	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998587	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	126	0	0	NA	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999207	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	315	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.46E-09	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	147	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	TTA	synonymous	NA	NA	NA	NA
M4_p20	chr2	127363814	12A2p6	cell line	sgMsh2	127363814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	243	0	0	NA	exonic	Adra2b	nonsynonymous SNV	Adra2b:NM_009633:exon1:c.T235C:p.Y79H	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	373	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.05E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127536625	12A2p6	cell line	sgMsh2	127536625	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	43	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon11:c.C1348A:p.L450M,Prom2:NM_178047:exon11:c.C1348A:p.L450M"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127756164	12A2p6	cell line	sgMsh2	127756164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	200	0	0	NA	exonic	Nphp1	nonsynonymous SNV	"Nphp1:NM_001291012:exon15:c.T1396C:p.Y466H,Nphp1:NM_001291013:exon15:c.T1393C:p.Y465H,Nphp1:NM_001355429:exon15:c.T1396C:p.Y466H,Nphp1:NM_001369236:exon15:c.T1396C:p.Y466H,Nphp1:NM_016902:exon15:c.T1399C:p.Y467H"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999989	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	127801272	12A2p6	cell line	sgMsh2	127801272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	179	0	0	NA	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon25:c.C3151T:p.L1051F,Bub1:NM_009772:exon25:c.C3148T:p.L1050F"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.454122795	2	0.7535533	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	269	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.17E-08	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	234	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr2	129472721	12A2p6	cell line	sgMsh2	129472721	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	367	0	0	NA	exonic	F830045P16Rik	nonsynonymous SNV	"F830045P16Rik:NM_001379444:exon3:c.A635G:p.K212R,F830045P16Rik:NM_177653:exon3:c.A635G:p.K212R"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.07E-09	CTT	nonsynonymous	AGTC	8	AGTCAGTC	NA
M4_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.224	362	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	130275979	12A2p6	cell line	sgMsh2	130275979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	159	0	0	NA	exonic	Nop56	nonsynonymous SNV	Nop56:NM_024193:exon5:c.T374C:p.V125A	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999882	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	146	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999975	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	146	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999975	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	131041706	12A2p6	cell line	sgMsh2	131041706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	48	0	0	NA	exonic	Gfra4	synonymous SNV	"Gfra4:NM_001136063:exon2:c.T99C:p.C33C,Gfra4:NM_001271001:exon2:c.T99C:p.C33C,Gfra4:NM_001271002:exon2:c.T126C:p.C42C,Gfra4:NM_020014:exon2:c.T126C:p.C42C"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9929093	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	141	0	0	NA	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999666	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	48	0	0	NA	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9929093	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	127	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999251	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	188	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999978	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	116	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998587	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	135364773	12A2p6	cell line	sgMsh2	135364773	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	19	0	0	NA	exonic	Plcb1	nonsynonymous SNV	"Plcb1:NM_001145830:exon26:c.G2716A:p.E906K,Plcb1:NM_019677:exon26:c.G2716A:p.E906K"	2qF3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9633235	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	135958735	12A2p6	cell line	sgMsh2	135958735	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	141	0	0	NA	exonic	Plcb4	nonsynonymous SNV	"Plcb4:NM_001355154:exon18:c.G1508A:p.S503N,Plcb4:NM_001355156:exon18:c.G704A:p.S235N,Plcb4:NM_001355153:exon19:c.G1508A:p.S503N,Plcb4:NM_001355155:exon19:c.G1508A:p.S503N,Plcb4:NM_013829:exon19:c.G1508A:p.S503N"	2qF3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999666	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	140661230	12A2p6	cell line	sgMsh2	140661230	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	155	0	0	NA	exonic	Flrt3	synonymous SNV	"Flrt3:NM_001172160:exon3:c.T477G:p.L159L,Flrt3:NM_178382:exon3:c.T477G:p.L159L"	2qF3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	AAA	synonymous	A	5	AAAAA	NA
M4_p20	chr2	144511505	12A2p6	cell line	sgMsh2	144511505	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	240	0	0	NA	exonic	Dzank1	nonsynonymous SNV	"Dzank1:NM_001360361:exon5:c.T461C:p.L154P,Dzank1:NM_001360362:exon5:c.T461C:p.L154P,Dzank1:NM_001360363:exon5:c.T461C:p.L154P,Dzank1:NM_172859:exon5:c.T461C:p.L154P"	2qG1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	148751018	12A2p6	cell line	sgMsh2	148751018	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	118	0	0	NA	exonic	Cstl1	frameshift deletion	Cstl1:NM_177655:exon2:c.92delG:p.G33Vfs*6	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4_p20	chr2	150753244	12A2p6	cell line	sgMsh2	150753244	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	69	0	0	NA	exonic	Entpd6	nonsynonymous SNV	"Entpd6:NM_001355068:exon2:c.G203A:p.R68H,Entpd6:NM_001370629:exon2:c.G203A:p.R68H,Entpd6:NM_001370630:exon2:c.G203A:p.R68H,Entpd6:NM_001370631:exon2:c.G203A:p.R68H,Entpd6:NM_172117:exon2:c.G203A:p.R68H"	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	150763636	12A2p6	cell line	sgMsh2	150763636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	exonic	Entpd6	nonsynonymous SNV	"Entpd6:NM_001355068:exon8:c.A785G:p.Y262C,Entpd6:NM_001370629:exon8:c.A785G:p.Y262C,Entpd6:NM_001370630:exon8:c.A785G:p.Y262C,Entpd6:NM_172117:exon8:c.A785G:p.Y262C"	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9949735	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	151472085	12A2p6	cell line	sgMsh2	151472085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	334	0	0	NA	exonic	4921509C19Rik	nonsynonymous SNV	4921509C19Rik:NM_198655:exon2:c.T1672C:p.S558P	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.49E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	67	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9976192	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	54	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9949735	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	152308424	12A2p6	cell line	sgMsh2	152308424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	335	0	0	NA	exonic	Tbc1d20	nonsynonymous SNV	Tbc1d20:NM_024196:exon5:c.A616G:p.M206V	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.46E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	30	0	0	NA	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.980226	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	201	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999999	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr2	153203866	12A2p6	cell line	sgMsh2	153203866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon16:c.A1657G:p.S553G	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994027	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	153920520	12A2p6	cell line	sgMsh2	153920520	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	103	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon3:c.T146C:p.I49T,Bpifb3:NM_194357:exon3:c.T146C:p.I49T"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.497893667	2	0.9796388	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	185	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999974	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	133	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999947	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M4_p20	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.2254	173	0	0	NA	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M4_p20	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	22	0	0	NA	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9689818	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr2	155506068	12A2p6	cell line	sgMsh2	155506068	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	74	0	0	NA	exonic	Ggt7	nonsynonymous SNV	"Ggt7:NM_001362898:exon3:c.T444G:p.S148R,Ggt7:NM_144786:exon3:c.T444G:p.S148R"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.426766	2	0.6129427	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	155561163	12A2p6	cell line	sgMsh2	155561163	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	126	0	0	NA	exonic	Acss2	synonymous SNV	Acss2:NM_019811:exon16:c.C1860G:p.G620G	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999207	GCC	synonymous	NA	NA	NA	NA
M4_p20	chr2	156095699	12A2p6	cell line	sgMsh2	156095699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	38	0	0	NA	exonic	Rbm12	synonymous SNV	"Rbm12:NM_029397:exon3:c.T2652C:p.S884S,Rbm12:NM_170598:exon3:c.T2652C:p.S884S"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9874444	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	657	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	160	0	0	NA	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999888	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M4_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	99	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996234	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	155	0	0	NA	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	53	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	306	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.45E-09	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr2	160992236	12A2p6	cell line	sgMsh2	160992236	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	304	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon18:c.A2705C:p.K902T	2qH2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.9120906	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	349	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.21E-09	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M4_p20	chr2	165515333	12A2p6	cell line	sgMsh2	165515333	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	exonic	Slc2a10	synonymous SNV	Slc2a10:NM_130451:exon2:c.C912T:p.C304C	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	GCG	synonymous	NA	NA	NA	NA
M4_p20	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	74	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	166646993	12A2p6	cell line	sgMsh2	166646993	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	138	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon2:c.T257G:p.L86R	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999603	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	166854918	12A2p6	cell line	sgMsh2	166854918	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	150	0	0	NA	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon13:c.G1700A:p.R567K	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.998258	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	382	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.03E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.666	6	0	0	NA	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9236119	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	116	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998587	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	172367054	12A2p6	cell line	sgMsh2	172367054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	64	0	0	NA	exonic	Aurka	nonsynonymous SNV	"Aurka:NM_001291185:exon3:c.C160T:p.R54C,Aurka:NM_011497:exon3:c.C226T:p.R76C"	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9971707	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	135	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999528	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999851	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	147	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	99	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	61	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	385	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.03E-09	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr2	178352481	12A2p6	cell line	sgMsh2	178352481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	168	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon35:c.T3649C:p.C1217R	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999993	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	178368492	12A2p6	cell line	sgMsh2	178368492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	167	0	0	NA	exonic	Sycp2	synonymous SNV	Sycp2:NM_177191:exon25:c.T2460G:p.P820P	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999925	CAG	synonymous	T	5	TTTTT	NA
M4_p20	chr2	180260288	12A2p6	cell line	sgMsh2	180260288	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	187	0	0	NA	exonic	Cables2	nonsynonymous SNV	Cables2:NM_145851:exon9:c.A1277C:p.K426T	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999977	CTT	nonsynonymous	CTTCA	12	CTTCACTTCACT	NA
M4_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	156	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999859	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	180660954	12A2p6	cell line	sgMsh2	180660954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	46	0	0	NA	exonic	Dido1	nonsynonymous SNV	Dido1:NM_175551:exon16:c.A5156G:p.Q1719R	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.992049	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	111	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.990735	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	101	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996644	ATC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	336	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97631202-181807525	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.9999164	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	111	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M4_p20	chr3	5400408	12A2p6	cell line	sgMsh2	5400408	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.G5703T:p.R1901S,Zfhx4:NM_030708:exon10:c.G5625T:p.R1875S"	3qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	286	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	301	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.27E-09	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	262	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.21E-08	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	165	0	0	NA	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999916	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	125	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	193	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999983	ACA	synonymous	NA	NA	NA	NA
M4_p20	chr3	20063980	12A2p6	cell line	sgMsh2	20063980	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	222	0	0	NA	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon3:c.G391A:p.E131K,Hltf:NM_009210:exon3:c.G391A:p.E131K"	3qA2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	27491158	12A2p6	cell line	sgMsh2	27491158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	168	0	0	NA	exonic	Fndc3b	nonsynonymous SNV	"Fndc3b:NM_173182:exon10:c.A1076G:p.Y359C,Fndc3b:NM_001356953:exon11:c.A1076G:p.Y359C"	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9999911	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	416	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	30636316	12A2p6	cell line	sgMsh2	30636316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	135	0	0	NA	exonic	Lrrc34	nonsynonymous SNV	Lrrc34:NM_027941:exon6:c.G436A:p.G146R	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999528	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	218	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	85	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991559	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	36222184	12A2p6	cell line	sgMsh2	36222184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	76	0	0	NA	exonic	Qrfpr	nonsynonymous SNV	Qrfpr:NM_198192:exon1:c.A56G:p.N19S	3qB	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9985821	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	36964891	12A2p6	cell line	sgMsh2	36964891	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	205	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon38:c.C5939G:p.S1980C	3qB	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999992	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	358	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.12E-09	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	38888297	12A2p6	cell line	sgMsh2	38888297	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.315	98	0	0	NA	exonic	Fat4	frameshift insertion	Fat4:NM_183221:exon1:c.1339dupC:p.T449Yfs*18	3qB	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CGC	frameshift	C	5	CCCCC	1
M4_p20	chr3	53043308	12A2p6	cell line	sgMsh2	53043308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	212	0	0	NA	exonic	Lhfp	nonsynonymous SNV	Lhfp:NM_175386:exon2:c.T2C:p.M1T	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	53655280	12A2p6	cell line	sgMsh2	53655280	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	99	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.A1805G:p.H602R	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	53656183	12A2p6	cell line	sgMsh2	53656183	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	104	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon1:c.G902T:p.R301M	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	125	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999159	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	290	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.18E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	181	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999967	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	235	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	167	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999925	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	93	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994678	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M4_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	329	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	2.02E-09	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	396	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	58416324	12A2p6	cell line	sgMsh2	58416326	GGT	-	Deletion	Strelka2;Vardict	2	0.0741	81	0	0	NA	exonic	Tsc22d2	nonframeshift deletion	"Tsc22d2:NM_001081229:exon1:c.636_638del:p.V217del,Tsc22d2:NM_001347233:exon1:c.636_638del:p.V217del"	3qD	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.4054277	NA	NA	CGG	inframe	GGT	17	GGTGGTGGTGGTGGTGG	-3
M4_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	86	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	227	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	30	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.980226	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	66061059	12A2p6	cell line	sgMsh2	66061059	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	192	0	0	NA	exonic	Veph1	frameshift deletion	Veph1:NM_145820:exon13:c.2262delA:p.K754Nfs*10	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M4_p20	chr3	67440182	12A2p6	cell line	sgMsh2	67440182	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	147	0	0	NA	exonic	Gfm1	nonsynonymous SNV	Gfm1:NM_138591:exon6:c.T773G:p.V258G	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	68898525	12A2p6	cell line	sgMsh2	68898525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	520	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon19:c.A2183G:p.K728R	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	447	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	178	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999996	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	311	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.84E-09	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	75257898	12A2p6	cell line	sgMsh2	75257898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	170	0	0	NA	exonic	Serpini2	nonsynonymous SNV	Serpini2:NM_026460:exon5:c.T695C:p.M232T	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999937	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	85	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991559	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	313	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.64E-09	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	154	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr3	82097612	12A2p6	cell line	sgMsh2	82097612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	355	0	0	NA	exonic	Gucy1a1	nonsynonymous SNV	"Gucy1a1:NM_001356987:exon8:c.C1865T:p.T622I,Gucy1a1:NM_001356988:exon8:c.C1865T:p.T622I,Gucy1a1:NM_021896:exon8:c.C1865T:p.T622I"	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.15E-09	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	199	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	202	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999999	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr3	84595028	12A2p6	cell line	sgMsh2	84595028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	182	0	0	NA	exonic	Tigd4	nonsynonymous SNV	Tigd4:NM_207278:exon1:c.A1251G:p.I417M	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999969	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	424	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M4_p20	chr3	85605048	12A2p6	cell line	sgMsh2	85605048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	208	0	0	NA	exonic	Gatb	nonsynonymous SNV	Gatb:NM_144896:exon5:c.A674C:p.D225A	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.999974	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	325	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.82E-09	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	87686006	12A2p6	cell line	sgMsh2	87686006	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	98	0	0	NA	exonic	Arhgef11	synonymous SNV	"Arhgef11:NM_001003912:exon4:c.A231G:p.A77A,Arhgef11:NM_001360195:exon4:c.A231G:p.A77A"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr3	87926813	12A2p6	cell line	sgMsh2	87926813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	30	0	0	NA	exonic	Rrnad1	nonsynonymous SNV	Rrnad1:NM_153562:exon5:c.A554G:p.N185S	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.980226	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	88116071	12A2p6	cell line	sgMsh2	88116071	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	84	0	0	NA	exonic	Iqgap3	synonymous SNV	Iqgap3:NM_001033484:exon34:c.C4362T:p.V1454V	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991058	TCA	synonymous	NA	NA	NA	NA
M4_p20	chr3	88168319	12A2p6	cell line	sgMsh2	88168319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	85	0	0	NA	exonic	Mef2d	nonsynonymous SNV	"Mef2d:NM_001310593:exon10:c.T1484C:p.V495A,Mef2d:NM_133665:exon10:c.T1487C:p.V496A,Mef2d:NM_001310587:exon11:c.T1508C:p.V503A"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991559	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	88394548	12A2p6	cell line	sgMsh2	88394548	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.106	69	0	0	NA	exonic	Pmf1	nonsynonymous SNV	"Pmf1:NM_001310605:exon3:c.A371C:p.E124A,Pmf1:NM_025928:exon5:c.A578C:p.E193A"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.579964051	2	0.9616842	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	99	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996234	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	88966257	12A2p6	cell line	sgMsh2	88966257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	310	0	0	NA	exonic	Ash1l	nonsynonymous SNV	Ash1l:NM_138679:exon1:c.A346G:p.K116E	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.95E-09	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	89243681	12A2p6	cell line	sgMsh2	89243681	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	48	0	0	NA	exonic	Trim46	nonsynonymous SNV	"Trim46:NM_001039466:exon3:c.C533A:p.A178D,Trim46:NM_183037:exon3:c.C572A:p.A191D"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9929093	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	89423528	12A2p6	cell line	sgMsh2	89423528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	180	0	0	NA	exonic	Shc1	nonsynonymous SNV	"Shc1:NM_001113331:exon3:c.G587A:p.C196Y,Shc1:NM_011368:exon4:c.G257A:p.C86Y"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999965	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	89432802	12A2p6	cell line	sgMsh2	89432802	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	25	0	0	NA	exonic	Pygo2	nonsynonymous SNV	"Pygo2:NM_001293763:exon3:c.A395C:p.Q132P,Pygo2:NM_001293766:exon3:c.A395C:p.Q132P,Pygo2:NM_001293767:exon3:c.A395C:p.Q132P,Pygo2:NM_001293768:exon3:c.A506C:p.Q169P,Pygo2:NM_026869:exon3:c.A395C:p.Q132P"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9737857	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	138	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9949343	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	77	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9986615	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	240	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	304	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.75E-09	TCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	90257131	12A2p6	cell line	sgMsh2	90257131	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	458	0	0	NA	exonic	Crtc2	nonsynonymous SNV	Crtc2:NM_028881:exon2:c.A168C:p.K56N	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr3	90352014	12A2p6	cell line	sgMsh2	90352014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	106	0	0	NA	exonic	Gatad2b	nonsynonymous SNV	"Gatad2b:NM_001379656:exon7:c.A1104G:p.I368M,Gatad2b:NM_001379657:exon7:c.A1101G:p.I367M,Gatad2b:NM_139304:exon7:c.A1104G:p.I368M,Gatad2b:NM_001379655:exon8:c.A1104G:p.I368M"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997485	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	399	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	546	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	87	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	CTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	79	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9988072	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	249	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	95506613	12A2p6	cell line	sgMsh2	95506613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	203	0	0	NA	exonic	Ctsk	nonsynonymous SNV	Ctsk:NM_007802:exon6:c.T670C:p.Y224H	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	330	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.61E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	314	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.55E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	169	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999934	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	203	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	96630957	12A2p6	cell line	sgMsh2	96630957	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	475	0	0	NA	exonic	Rbm8a	frameshift deletion	"Rbm8a:NM_001102407:exon4:c.297delA:p.N101Ifs*12,Rbm8a:NM_025875:exon4:c.294delA:p.N100Ifs*12"	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	247	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	189	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999979	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	98852774	12A2p6	cell line	sgMsh2	98852774	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	425	0	0	NA	exonic	Hsd3b1	synonymous SNV	"Hsd3b1:NM_001304800:exon4:c.T900C:p.T300T,Hsd3b1:NM_008293:exon5:c.T900C:p.T300T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	129	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.930131026	1	0.9987508	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	160	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999888	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	101056623	12A2p6	cell line	sgMsh2	101056623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	107	0	0	NA	exonic	Ptgfrn	nonsynonymous SNV	Ptgfrn:NM_011197:exon6:c.A1672G:p.K558E	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	101586865	12A2p6	cell line	sgMsh2	101586865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	125	0	0	NA	exonic	Atp1a1	nonsynonymous SNV	Atp1a1:NM_144900:exon11:c.A1418G:p.K473R	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	165	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999916	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	412	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	46	0	0	NA	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.992049	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	103821642	12A2p6	cell line	sgMsh2	103821642	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	121	0	0	NA	exonic	Ap4b1	nonsynonymous SNV	"Ap4b1:NM_001163553:exon9:c.C2015A:p.P672H,Ap4b1:NM_026193:exon10:c.C2099A:p.P700H,Ap4b1:NM_001163552:exon11:c.C2099A:p.P700H"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998941	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	113	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9572611	GGA	synonymous	NA	NA	NA	NA
M4_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	130	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999937	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	256	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.49E-08	CTG	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr3	106161214	12A2p6	cell line	sgMsh2	106161214	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	259	0	0	NA	exonic	Chil3	frameshift deletion	Chil3:NM_009892:exon4:c.274delA:p.T92Lfs*67	3qF2.2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	228	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	142	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999685	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.302	145	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M4_p20	chr3	107332304	12A2p6	cell line	sgMsh2	107332304	C	T	SNV	Mutect2;MuSe;Vardict	3	0.308	13	0	0	NA	exonic	Rbm15	synonymous SNV	Rbm15:NM_001045807:exon1:c.G777A:p.P259P	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9487899	ACG	synonymous	NA	NA	NA	NA
M4_p20	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	53	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	212	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	128	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr3	108413893	12A2p6	cell line	sgMsh2	108413893	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	137	0	0	NA	exonic	Celsr2	frameshift deletion	"Celsr2:NM_001004177:exon1:c.1602delT:p.G535Vfs*45,Celsr2:NM_017392:exon1:c.1602delT:p.G535Vfs*45"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAG	frameshift	NA	NA	NA	-1
M4_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	157	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999867	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	87	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	114164371	12A2p6	cell line	sgMsh2	114164371	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	65	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon43:c.C3293A:p.P1098H	3qF3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9973289	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	164	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	97	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9995774	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	116579670	12A2p6	cell line	sgMsh2	116579670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	164	0	0	NA	exonic	Lrrc39	nonsynonymous SNV	Lrrc39:NM_001379629:exon8:c.A978G:p.I326M	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	TAT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	268	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.30E-08	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	181	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999967	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	122141756	12A2p6	cell line	sgMsh2	122141756	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	244	0	0	NA	exonic	Abca4	frameshift deletion	Abca4:NM_007378:exon31:c.4602delA:p.T1536Rfs*5	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	253	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	123552522	12A2p6	cell line	sgMsh2	123552522	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	212	0	0	NA	exonic	Ndst3	nonsynonymous SNV	"Ndst3:NM_001293682:exon8:c.C857T:p.A286V,Ndst3:NM_031186:exon9:c.C2102T:p.A701V"	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	148	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999777	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	124321788	12A2p6	cell line	sgMsh2	124321788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	145	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.T596C:p.I199T	3qG1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	225	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr3	127544208	12A2p6	cell line	sgMsh2	127544208	T	-	Deletion	Strelka2;Vardict	2	0.2048	166	0	0	NA	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M4_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	264	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.87E-08	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	267	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.43E-08	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	89	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993297	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	373	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.05E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	183	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	256	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.49E-08	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	175	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999953	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	220	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	164	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999911	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	137885322	12A2p6	cell line	sgMsh2	137885322	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	110	0	0	NA	exonic	Dnajb14	synonymous SNV	Dnajb14:NM_001033155:exon2:c.G183A:p.T61T	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998003	CGC	synonymous	NA	NA	NA	NA
M4_p20	chr3	138147385	12A2p6	cell line	sgMsh2	138147385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	101	0	0	NA	exonic	Trmt10a	synonymous SNV	"Trmt10a:NM_001348196:exon2:c.T6C:p.N2N,Trmt10a:NM_175389:exon2:c.T6C:p.N2N,Trmt10a:NM_001348197:exon3:c.T6C:p.N2N"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.771461615	1	0.6210374	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	381	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	1	0.9999993	AAA	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr3	141211479	12A2p6	cell line	sgMsh2	141211479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	118	0	0	NA	exonic	Pdha2	synonymous SNV	Pdha2:NM_008811:exon1:c.T267C:p.R89R	3qH1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.672977154	2	0.9725441	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	317	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.30E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	479	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	143	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999702	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	148833898	12A2p6	cell line	sgMsh2	148833898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	0	0	NA	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon16:c.A2985G:p.I995M	3qH3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	152276697	12A2p6	cell line	sgMsh2	152276697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	108	0	0	NA	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon14:c.A1549G:p.T517A,Miga1:NM_174868:exon16:c.A1741G:p.T581A"	3qH3	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	CCA	synonymous	C	5	CCCCC	NA
M4_p20	chr3	154264010	12A2p6	cell line	sgMsh2	154264010	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	357	0	0	NA	exonic	Slc44a5	nonsynonymous SNV	Slc44a5:NM_001081263:exon19:c.A1803C:p.E601D	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.13E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	631	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	161	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999895	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	149	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999789	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	155086895	12A2p6	cell line	sgMsh2	155086895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	262	0	0	NA	exonic	Fpgt	synonymous SNV	Fpgt:NM_029330:exon4:c.A1494G:p.K498K	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.21E-08	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr3	155087127	12A2p6	cell line	sgMsh2	155087127	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	118	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.C1262T:p.S421F	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998741	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	246	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	137	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999579	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	155101249	12A2p6	cell line	sgMsh2	155101249	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	152	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon3:c.534delC:p.S180Vfs*9	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	113	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999832	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	245	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	158170584	12A2p6	cell line	sgMsh2	158170584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	128	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon18:c.C1967T:p.P656L,Lrrc7:NM_001370782:exon18:c.C1967T:p.P656L,Lrrc7:NM_001081358:exon19:c.C1868T:p.P623L,Lrrc7:NM_001291452:exon19:c.C1868T:p.P623L,Lrrc7:NM_001291453:exon19:c.C1868T:p.P623L"	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr3	159522741	12A2p6	cell line	sgMsh2	159522741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	203	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon8:c.T1129C:p.C377R,Depdc1a:NM_029523:exon8:c.T1129C:p.C377R"	3qH4	chr3-10012637-159913826	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	ATG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M4_p20	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	286	0	0	NA	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.78E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	4058811	12A2p6	cell line	sgMsh2	4058811	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	328	0	0	NA	exonic	Sdr16c6	nonsynonymous SNV	Sdr16c6:NM_001080710:exon6:c.A774T:p.Q258H	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.175083487	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	5798842	12A2p6	cell line	sgMsh2	5798842	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	71	0	0	NA	exonic	Fam110b	nonsynonymous SNV	"Fam110b:NM_001355716:exon3:c.C259A:p.P87T,Fam110b:NM_173426:exon3:c.C259A:p.P87T"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	8238026	12A2p6	cell line	sgMsh2	8238026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	124	0	0	NA	exonic	Car8	nonsynonymous SNV	Car8:NM_007592:exon2:c.A188G:p.D63G	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9944342	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	103	0	0	NA	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	11248260	12A2p6	cell line	sgMsh2	11248260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Ints8	synonymous SNV	"Ints8:NM_001159595:exon3:c.T357C:p.S119S,Ints8:NM_178112:exon3:c.T357C:p.S119S"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994362	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr4	11317100	12A2p6	cell line	sgMsh2	11317100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	155	0	0	NA	exonic	Dpy19l4	nonsynonymous SNV	Dpy19l4:NM_001081201:exon2:c.A97G:p.T33A	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999851	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	288	0	0	NA	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.93E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	14524506	12A2p6	cell line	sgMsh2	14524506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	235	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon12:c.T1377G:p.F459L	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CAA	nonsynonymous	AAC	8	AACAACAA	NA
M4_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	282	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.08E-08	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	129	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999333	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	19122406	12A2p6	cell line	sgMsh2	19122406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	208	0	0	NA	exonic	Cnbd1	synonymous SNV	Cnbd1:NM_001371269:exon1:c.T81C:p.S27S	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999993	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr4	19364135	12A2p6	cell line	sgMsh2	19364135	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	91	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon4:c.C338T:p.T113I	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.09286727	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	19367774	12A2p6	cell line	sgMsh2	19367774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	230	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon6:c.C682A:p.L228I	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	83	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	175	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	1	0.8875507	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	240	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	21879772	12A2p6	cell line	sgMsh2	21879772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	47	0	0	NA	exonic	Coq3	nonsynonymous SNV	Coq3:NM_172687:exon1:c.C85T:p.P29S	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9924913	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	277	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.41E-08	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	130	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999937	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	164	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	33081343	12A2p6	cell line	sgMsh2	33081343	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	68	0	0	NA	exonic	Gabrr2	synonymous SNV	Gabrr2:NM_008076:exon4:c.C378T:p.T126T	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.9658095	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	263	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.03E-08	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	35083872	12A2p6	cell line	sgMsh2	35083872	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	262	0	0	NA	exonic	Mob3b	nonsynonymous SNV	Mob3b:NM_178061:exon2:c.T316C:p.Y106H	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.21E-08	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	40220401	12A2p6	cell line	sgMsh2	40220401	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	187	0	0	NA	exonic	Ddx58	nonsynonymous SNV	Ddx58:NM_172689:exon10:c.T1481G:p.L494R	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.9997706	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	320	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.574492692	2	1.50E-09	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	55	0	0	NA	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	41093949	12A2p6	cell line	sgMsh2	41093949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	55	0	0	NA	exonic	Aqp3	synonymous SNV	Aqp3:NM_016689:exon5:c.T543C:p.P181P	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	89	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4_p20	chr4	41769953	12A2p6	cell line	sgMsh2	41769953	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	73	0	0	NA	exonic	Ccl27a	nonsynonymous SNV	"Ccl27a:NM_011336:exon2:c.A97T:p.S33C,Ccl27a:NM_001361246:exon4:c.A229T:p.S77C,Ccl27a:NM_001048179:exon5:c.A229T:p.S77C,Ccl27a:NM_001347065:exon5:c.A118T:p.S40C"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	42972753	12A2p6	cell line	sgMsh2	42972753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	72	0	0	NA	exonic	1700022I11Rik	synonymous SNV	1700022I11Rik:NM_026088:exon2:c.A2085G:p.P695P	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr4	43009258	12A2p6	cell line	sgMsh2	43009258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	43	0	0	NA	exonic	Fancg	nonsynonymous SNV	"Fancg:NM_001163233:exon3:c.C212T:p.A71V,Fancg:NM_053081:exon3:c.C212T:p.A71V"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	43578228	12A2p6	cell line	sgMsh2	43578228	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	41	0	0	NA	exonic	Gba2	nonsynonymous SNV	Gba2:NM_172692:exon1:c.G120T:p.E40D	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9839703	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	143	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999702	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	176	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	45279623	12A2p6	cell line	sgMsh2	45279623	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	21	0	0	NA	exonic	Frmpd1	frameshift deletion	Frmpd1:NM_001081172:exon15:c.2347delC:p.P783Hfs*15	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	374	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M4_p20	chr4	45882738	12A2p6	cell line	sgMsh2	45882738	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	155	0	0	NA	exonic	Stra6l	nonsynonymous SNV	"Stra6l:NM_028788:exon16:c.A1448C:p.N483T,Stra6l:NM_001305421:exon17:c.A1175C:p.N392T"	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999851	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	48279388	12A2p6	cell line	sgMsh2	48279388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	40	0	0	NA	exonic	Erp44	nonsynonymous SNV	Erp44:NM_029572:exon1:c.T53C:p.L18P	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9887973	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	104	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	55011581	12A2p6	cell line	sgMsh2	55011581	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.211	93	0	0	NA	exonic	Zfp462	frameshift insertion	Zfp462:NM_172867:exon3:c.3547dupT:p.C1185Lfs*4	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
M4_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	177	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.8020393	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	52	0	0	NA	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9943622	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	357	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.13E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	79	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9982404	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	195	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	2	0.5069352	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	69	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9978781	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	184	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999972	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	42	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.009994125	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	95	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995257	CTA	synonymous	NA	NA	NA	NA
M4_p20	chr4	70448665	12A2p6	cell line	sgMsh2	70448665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	153	0	0	NA	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon4:c.T1079C:p.I360T	4qC2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	74343488	12A2p6	cell line	sgMsh2	74343488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	204	0	0	NA	exonic	Kdm4c	synonymous SNV	"Kdm4c:NM_001356561:exon12:c.T1674C:p.N558N,Kdm4c:NM_001172095:exon13:c.T1950C:p.N650N,Kdm4c:NM_144787:exon13:c.T1899C:p.N633N"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	227	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	286	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.78E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	85377397	12A2p6	cell line	sgMsh2	85377397	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	105	0	0	NA	exonic	Sh3gl2	nonsynonymous SNV	Sh3gl2:NM_019535:exon5:c.C335A:p.P112H	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997336	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	89176859	12A2p6	cell line	sgMsh2	89176859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	139	0	0	NA	exonic	Mtap	nonsynonymous SNV	Mtap:NM_024433:exon7:c.T747G:p.S249R	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	94599690	12A2p6	cell line	sgMsh2	94599690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	122	0	0	NA	exonic	Gm12657	synonymous SNV	Gm12657:NM_001081019:exon2:c.T306C:p.V102V	4qC5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999001	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr4	96307394	12A2p6	cell line	sgMsh2	96307394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	363	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.T1064C:p.L355S	4qC5	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.09E-09	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	116	0	0	NA	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998587	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	47	0	0	NA	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9924913	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	294	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.90E-09	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr4	99221213	12A2p6	cell line	sgMsh2	99221213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	0	0	NA	exonic	Atg4c	nonsynonymous SNV	"Atg4c:NM_001145967:exon5:c.T416C:p.L139P,Atg4c:NM_175029:exon5:c.T416C:p.L139P"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999944	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	143	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999702	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M4_p20	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	182	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	2	0.8610188	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	80	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4_p20	chr4	106450159	12A2p6	cell line	sgMsh2	106450159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	23	0	0	NA	exonic	Pcsk9	nonsynonymous SNV	Pcsk9:NM_153565:exon6:c.T886C:p.Y296H	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9706714	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	205	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	TAG	synonymous	GTA	8	GTAGTAGT	NA
M4_p20	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	353	0	0	NA	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.16E-09	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	271	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.95E-08	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	297	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.12E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	163	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999906	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	111880286	12A2p6	cell line	sgMsh2	111880286	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	57	0	0	NA	exonic	Slc5a9	nonsynonymous SNV	Slc5a9:NM_145551:exon14:c.G1775A:p.G592E	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9957689	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	112290341	12A2p6	cell line	sgMsh2	112290341	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	68	0	0	NA	exonic	Skint3	synonymous SNV	"Skint3:NM_177578:exon7:c.C1044A:p.V348V,Skint3:NM_001348354:exon8:c.C912A:p.V304V,Skint3:NM_001102474:exon9:c.C1260A:p.V420V"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9977524	TCT	synonymous	NA	NA	NA	NA
M4_p20	chr4	112389201	12A2p6	cell line	sgMsh2	112389201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	107	0	0	NA	exonic	Skint9	nonsynonymous SNV	Skint9:NM_177864:exon6:c.T713C:p.V238A	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997626	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	231	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr4	113556115	12A2p6	cell line	sgMsh2	113556115	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	243	0	0	NA	exonic	Skint5	stopgain	"Skint5:NM_001167876:exon47:c.G3442T:p.E1148X,Skint5:NM_001167878:exon47:c.G3442T:p.E1148X"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	159	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9136152	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	115492211	12A2p6	cell line	sgMsh2	115492211	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	172	0	0	NA	exonic	Cyp4a14	synonymous SNV	Cyp4a14:NM_007822:exon6:c.T651G:p.A217A	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999944	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	288	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.93E-09	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	117111308	12A2p6	cell line	sgMsh2	117111308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	67	0	0	NA	exonic	Ptch2	nonsynonymous SNV	"Ptch2:NM_001312903:exon18:c.T1913C:p.L638P,Ptch2:NM_008958:exon18:c.T2879C:p.L960P"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	117273073	12A2p6	cell line	sgMsh2	117273073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	171	0	0	NA	exonic	Rnf220	stopgain	"Rnf220:NM_001310730:exon10:c.G835T:p.E279X,Rnf220:NM_001310731:exon10:c.G646T:p.E216X,Rnf220:NM_001310729:exon13:c.G970T:p.E324X,Rnf220:NM_025739:exon14:c.G1609T:p.E537X"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	206	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	119187290	12A2p6	cell line	sgMsh2	119187290	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	93	0	0	NA	exonic	Ermap	nonsynonymous SNV	"Ermap:NM_001369066:exon4:c.T230A:p.F77Y,Ermap:NM_013848:exon4:c.T230A:p.F77Y"	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	119226906	12A2p6	cell line	sgMsh2	119226906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	98	0	0	NA	exonic	AU022252	synonymous SNV	AU022252:NM_001012400:exon4:c.T309C:p.A103A	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	52	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9943622	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	120468444	12A2p6	cell line	sgMsh2	120468444	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	91	0	0	NA	exonic	Scmh1	synonymous SNV	"Scmh1:NM_001355424:exon5:c.T285C:p.N95N,Scmh1:NM_001355423:exon6:c.T357C:p.N119N,Scmh1:NM_001379184:exon6:c.T381C:p.N127N,Scmh1:NM_001159630:exon7:c.T357C:p.N119N,Scmh1:NM_001379186:exon7:c.T285C:p.N95N,Scmh1:NM_013883:exon7:c.T357C:p.N119N,Scmh1:NM_001379185:exon8:c.T357C:p.N119N"	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994027	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	117	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998667	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	376	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.04E-09	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	206	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	CAG	synonymous	GT	8	GTGTGTGT	NA
M4_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	211	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	144	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999719	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	124914717	12A2p6	cell line	sgMsh2	124914717	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	53	0	0	NA	exonic	Epha10	frameshift deletion	Epha10:NM_001256432:exon15:c.2596delC:p.R868Gfs*9	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4_p20	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	114	0	0	NA	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998415	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	251	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	83	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9990527	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	235	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	182	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999969	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	128549242	12A2p6	cell line	sgMsh2	128549242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	66	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon62:c.A9785G:p.Q3262R	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9974782	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	31	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9813139	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	103	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	106	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	89	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr4	129618554	12A2p6	cell line	sgMsh2	129618554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	73	0	0	NA	exonic	Iqcc	nonsynonymous SNV	Iqcc:NM_198026:exon2:c.G124A:p.G42S	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	130951862	12A2p6	cell line	sgMsh2	130951862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	138	0	0	NA	exonic	Matn1	nonsynonymous SNV	Matn1:NM_010769:exon5:c.T826C:p.S276P	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999603	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	272	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.84E-08	TTC	synonymous	NA	NA	NA	NA
M4_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	27	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9765765	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	185	0	0	NA	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999974	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	190	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999998	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	53	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9946766	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	69	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	44	0	0	NA	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9910852	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	135969256	12A2p6	cell line	sgMsh2	135969256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	86	0	0	NA	exonic	Lypla2	nonsynonymous SNV	Lypla2:NM_011942:exon9:c.T533C:p.M178T	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992032	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	148	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999777	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	136946101	12A2p6	cell line	sgMsh2	136946101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon3:c.A371G:p.H124R	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	132	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999439	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	71	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	17	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.959003	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	61	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M4_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9970032	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	110	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998003	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	139967366	12A2p6	cell line	sgMsh2	139967366	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	26	0	0	NA	exonic	Klhdc7a	nonsynonymous SNV	Klhdc7a:NM_173427:exon1:c.A269G:p.K90R	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9752194	CTT	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	21	0	0	NA	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9671975	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	40	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9887973	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	141628016	12A2p6	cell line	sgMsh2	141628016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	75	0	0	NA	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon17:c.T2720G:p.L907R,Plekhm2:NM_001033150:exon18:c.T2780G:p.L927R"	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9793984	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	141905105	12A2p6	cell line	sgMsh2	141905105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	139	0	0	NA	exonic	Fhad1	nonsynonymous SNV	Fhad1:NM_177868:exon28:c.T3722C:p.L1241P	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	143656547	12A2p6	cell line	sgMsh2	143656547	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	311	0	0	NA	exonic	Pramel22	nonsynonymous SNV	Pramel22:NM_001126325:exon2:c.G101A:p.G34D	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.84E-09	ACC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr4	143697033	12A2p6	cell line	sgMsh2	143697033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	230	0	0	NA	exonic	Pramel23	synonymous SNV	Pramel23:NM_001356572:exon4:c.A1185G:p.L395L	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	162	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr4	143811579	12A2p6	cell line	sgMsh2	143811579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	138	0	0	NA	exonic	Pramel26	nonsynonymous SNV	"Pramel26:NM_001005371:exon3:c.T821C:p.I274T,Pramel26:NM_001347257:exon3:c.T821C:p.I274T"	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999603	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	620	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	1	0.9979877	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	144158165	12A2p6	cell line	sgMsh2	144158165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	287	0	0	NA	exonic	Oog3	synonymous SNV	Oog3:NM_201258:exon4:c.A1200G:p.T400T	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	8.34E-09	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr4	144196215	12A2p6	cell line	sgMsh2	144196215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	83	0	0	NA	exonic	Oog2	nonsynonymous SNV	Oog2:NM_198661:exon5:c.T1049C:p.L350S	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9990527	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	144376938	12A2p6	cell line	sgMsh2	144376938	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	257	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon2:c.A617C:p.E206A	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.24E-08	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	145536605	12A2p6	cell line	sgMsh2	145536605	C	T	SNV	Mutect2;Vardict	2	0.017	937	0	0	NA	exonic	Zfp990	nonsynonymous SNV	Zfp990:NM_001324553:exon4:c.C172T:p.R58C	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.093013103	3	1	ACG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	148012708	12A2p6	cell line	sgMsh2	148012708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	153	0	0	NA	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon18:c.A1892G:p.H631R	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	55	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	151143907	12A2p6	cell line	sgMsh2	151143907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	64	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A2467G:p.I823V	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9971707	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	0	0	NA	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	154269992	12A2p6	cell line	sgMsh2	154269992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	43	0	0	NA	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon33:c.C4235A:p.P1412H	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9905608	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	154291298	12A2p6	cell line	sgMsh2	154291298	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	26	0	0	NA	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.C238A:p.P80T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9752194	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	154340784	12A2p6	cell line	sgMsh2	154340784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	176	0	0	NA	exonic	Prdm16	nonsynonymous SNV	"Prdm16:NM_001177995:exon9:c.T2546C:p.L849P,Prdm16:NM_001291026:exon9:c.T2540C:p.L847P,Prdm16:NM_001291029:exon9:c.T2546C:p.L849P,Prdm16:NM_027504:exon9:c.T2543C:p.L848P"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	65	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9973289	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	0	0	NA	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	62	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155145172	12A2p6	cell line	sgMsh2	155145172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	45	0	0	NA	exonic	Morn1	nonsynonymous SNV	Morn1:NM_001081100:exon14:c.T1297C:p.Y433H	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9802869	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155221584	12A2p6	cell line	sgMsh2	155221584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	64	0	0	NA	exonic	Ski	nonsynonymous SNV	"Ski:NM_001357191:exon1:c.T937C:p.Y313H,Ski:NM_011385:exon1:c.T937C:p.Y313H"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9971707	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	184	0	0	NA	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999972	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155661259	12A2p6	cell line	sgMsh2	155661259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	111	0	0	NA	exonic	Mib2	nonsynonymous SNV	"Mib2:NM_001369162:exon2:c.G94A:p.G32S,Mib2:NM_001256107:exon3:c.G94A:p.G32S,Mib2:NM_001369164:exon3:c.G94A:p.G32S,Mib2:NM_001369167:exon3:c.G94A:p.G32S,Mib2:NM_001369168:exon3:c.G94A:p.G32S,Mib2:NM_145124:exon3:c.G94A:p.G32S,Mib2:NM_001256108:exon4:c.G94A:p.G32S,Mib2:NM_001369161:exon4:c.G94A:p.G32S,Mib2:NM_001369163:exon4:c.G94A:p.G32S,Mib2:NM_001369165:exon4:c.G94A:p.G32S"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998115	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155841784	12A2p6	cell line	sgMsh2	155841784	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	74	0	0	NA	exonic	Mxra8	nonsynonymous SNV	Mxra8:NM_024263:exon5:c.G598A:p.A200T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155842017	12A2p6	cell line	sgMsh2	155842017	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	157	0	0	NA	exonic	Mxra8	stopgain	Mxra8:NM_024263:exon5:c.C831A:p.Y277X	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999867	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	121	0	0	NA	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998941	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	274	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.65E-08	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	183	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999997	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	295	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.63E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	145	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9998032	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	155	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9996177	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.565	140	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999646	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	72	0	0	NA	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9982147	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	181	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999967	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	182	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	1	0.5297043	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	182	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999969	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	80	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	139	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999625	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	14714463	12A2p6	cell line	sgMsh2	14714463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	223	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.A12949G:p.R4317G,Pclo:NM_011995:exon7:c.A12949G:p.R4317G"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	14790376	12A2p6	cell line	sgMsh2	14790376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	235	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon18:c.T14144C:p.L4715S,Pclo:NM_011995:exon18:c.T14144C:p.L4715S"	5qA1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	14913604	12A2p6	cell line	sgMsh2	14913604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	481	0	0	NA	exonic	Gm9758	nonsynonymous SNV	Gm9758:NM_198666:exon2:c.A209G:p.K70R	5qA2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	265	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.71E-08	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	23500293	12A2p6	cell line	sgMsh2	23500293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	337	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon23:c.A3820T:p.S1274C	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.41E-09	AAG	nonsynonymous	GA	10	GAGAGAGAGA	NA
M4_p20	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.625	20	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9653132	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	55	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9952539	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr5	24593239	12A2p6	cell line	sgMsh2	24593239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	86	0	0	NA	exonic	Smarcd3	nonsynonymous SNV	Smarcd3:NM_025891:exon11:c.A1282G:p.S428G	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992032	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.508	184	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999972	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	489	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	1.13E-09	GAA	synonymous	NA	NA	NA	NA
M4_p20	chr5	27262319	12A2p6	cell line	sgMsh2	27262319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	87	0	0	NA	exonic	Dpp6	nonsynonymous SNV	Dpp6:NM_001136060:exon1:c.G15T:p.K5N	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999646	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	0	0	NA	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	162	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.431	96	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M4_p20	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	198	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M4_p20	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	195	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M4_p20	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	62	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9968257	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	31487300	12A2p6	cell line	sgMsh2	31487300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	37	0	0	NA	exonic	4930548H24Rik	synonymous SNV	4930548H24Rik:NM_026296:exon2:c.A396G:p.K132K	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9867087	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	158	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999727	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	364	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.09E-09	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	168	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999993	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M4_p20	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	134	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.99995	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	33921861	12A2p6	cell line	sgMsh2	33921861	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	92	0	0	NA	exonic	Nelfa	stopgain	Nelfa:NM_011914:exon2:c.G367T:p.E123X	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	231	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	34905586	12A2p6	cell line	sgMsh2	34905586	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon63:c.A8561G:p.H2854R	5qB2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	36483906	12A2p6	cell line	sgMsh2	36483906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	11	0	0	NA	exonic	Tada2b	nonsynonymous SNV	Tada2b:NM_001170454:exon1:c.A152G:p.Y51C	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.942737	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	86	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992032	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	38351287	12A2p6	cell line	sgMsh2	38351287	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	171	0	0	NA	exonic	Slc2a9	synonymous SNV	"Slc2a9:NM_001102415:exon10:c.A1092T:p.A364A,Slc2a9:NM_145559:exon11:c.A1047T:p.A349A,Slc2a9:NM_001012363:exon12:c.A1368T:p.A456A,Slc2a9:NM_001102414:exon12:c.A1413T:p.A471A"	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr5	41806753	12A2p6	cell line	sgMsh2	41806753	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	60	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon16:c.G8097A:p.E2699E,Bod1l:NM_001310601:exon16:c.G8097A:p.E2699E"	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9964389	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr5	48189448	12A2p6	cell line	sgMsh2	48189448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	170	0	0	NA	exonic	Slit2	synonymous SNV	"Slit2:NM_001291227:exon8:c.T631C:p.L211L,Slit2:NM_001291228:exon8:c.T631C:p.L211L,Slit2:NM_178804:exon8:c.T631C:p.L211L"	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999937	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	135	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999528	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	50009459	12A2p6	cell line	sgMsh2	50009459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	288	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon6:c.A550G:p.I184V	5qB3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.93E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	79	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.875417436	1	0.9715295	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	67	0	0	NA	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	53652727	12A2p6	cell line	sgMsh2	53652727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	244	0	0	NA	exonic	Rbpj	nonsynonymous SNV	"Rbpj:NM_001080927:exon9:c.C1009T:p.P337S,Rbpj:NM_001080928:exon9:c.C1003T:p.P335S,Rbpj:NM_001359152:exon9:c.C1009T:p.P337S,Rbpj:NM_009035:exon9:c.C1126T:p.P376S,Rbpj:NM_001277116:exon11:c.C1069T:p.P357S"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	212	0	0	NA	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9995477	GTT	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr5	57721014	12A2p6	cell line	sgMsh2	57721014	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	210	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.C1910A:p.P637H,Pcdh7:NM_001310606:exon1:c.C1910A:p.P637H,Pcdh7:NM_001310608:exon1:c.C1910A:p.P637H,Pcdh7:NM_018764:exon1:c.C1910A:p.P637H"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	295	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.63E-09	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	57721784	12A2p6	cell line	sgMsh2	57721784	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	133	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.A2680C:p.I894L,Pcdh7:NM_001310606:exon1:c.A2680C:p.I894L,Pcdh7:NM_001310608:exon1:c.A2680C:p.I894L,Pcdh7:NM_018764:exon1:c.A2680C:p.I894L"	5qC1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999947	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	295	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.63E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	67	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9610086	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.565	63	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9970032	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	207	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999993	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	212	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	43	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	244	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr5	73104745	12A2p6	cell line	sgMsh2	73104745	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	339	0	0	NA	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon19:c.T1678C:p.C560R	5qC3.2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.37E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	134	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.99995	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.593	109	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M4_p20	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	84	0	0	NA	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991058	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	77	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr5	83354856	12A2p6	cell line	sgMsh2	83354856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	181	0	0	NA	exonic	Tecrl	nonsynonymous SNV	Tecrl:NM_153801:exon1:c.G145A:p.A49T	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999967	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	84331598	12A2p6	cell line	sgMsh2	84331598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	228	0	0	NA	exonic	Epha5	synonymous SNV	Epha5:NM_007937:exon3:c.T546C:p.D182D	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr5	86303666	12A2p6	cell line	sgMsh2	86303666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	146	0	0	NA	exonic	Tmprss11d	nonsynonymous SNV	Tmprss11d:NM_145561:exon10:c.T1199C:p.V400A	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999975	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	174	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999995	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	198	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	87001106	12A2p6	cell line	sgMsh2	87001106	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	159	0	0	NA	exonic	Ugt2b35	nonsynonymous SNV	Ugt2b35:NM_172881:exon1:c.T215G:p.L72R	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999882	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	226	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	128	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	GCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	192	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999982	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	160	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999888	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	89571680	12A2p6	cell line	sgMsh2	89571680	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	226	0	0	NA	exonic	Npffr2	nonsynonymous SNV	Npffr2:NM_133192:exon3:c.A427G:p.R143G	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	196	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999986	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	198	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	191	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999981	AAC	synonymous	A	5	AAAAA	NA
M4_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	147	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999764	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	320	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.09E-09	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr5	96709879	12A2p6	cell line	sgMsh2	96709879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	107	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon44:c.A6031T:p.R2011W	5qE3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997626	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	99232321	12A2p6	cell line	sgMsh2	99232321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	528	0	0	NA	exonic	Rasgef1b	nonsynonymous SNV	"Rasgef1b:NM_145839:exon7:c.T806C:p.V269A,Rasgef1b:NM_181318:exon7:c.T803C:p.V268A"	5qE3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	41	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9894186	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	100817984	12A2p6	cell line	sgMsh2	100817984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	236	0	0	NA	exonic	Abraxas1	nonsynonymous SNV	Abraxas1:NM_172405:exon3:c.A193G:p.I65V	5qE4	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	101906129	12A2p6	cell line	sgMsh2	101906129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	94	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon30:c.A4824G:p.I1608M	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994976	TTA	nonsynonymous	TTAT	10	TTATTTATTT	NA
M4_p20	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	177	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999958	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	175	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999953	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	133	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999947	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	391	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-09	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	330	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.61E-09	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr5	104815386	12A2p6	cell line	sgMsh2	104815386	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	320	0	0	NA	exonic	Zfp951	nonsynonymous SNV	Zfp951:NM_001039231:exon5:c.G313T:p.G105C	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.09E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	106618268	12A2p6	cell line	sgMsh2	106618268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	119	0	0	NA	exonic	Zfp644	nonsynonymous SNV	"Zfp644:NM_001363323:exon6:c.T3772C:p.F1258L,Zfp644:NM_001363320:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363321:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363322:exon7:c.T3814C:p.F1272L,Zfp644:NM_026856:exon7:c.T3847C:p.F1283L,Zfp644:NM_001363319:exon8:c.T3847C:p.F1283L,Zfp644:NM_001363318:exon10:c.T3847C:p.F1283L"	5qE5	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998812	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	101	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996644	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9881399	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	190	0	0	NA	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999998	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	110324597	12A2p6	cell line	sgMsh2	110324597	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	159	0	0	NA	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon36:c.G4725T:p.K1575N	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999882	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	110720814	12A2p6	cell line	sgMsh2	110720814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	127	0	0	NA	exonic	Ep400	synonymous SNV	"Ep400:NM_173066:exon12:c.T2743C:p.L915L,Ep400:NM_029337:exon13:c.T2851C:p.L951L"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr5	111224041	12A2p6	cell line	sgMsh2	111224041	G	-	Deletion	Mutect2;Vardict	2	0.127	62	0	0	NA	exonic	Ttc28	frameshift deletion	Ttc28:NM_001267622:exon7:c.2355delG:p.E787Sfs*34	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M4_p20	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	106	0	0	NA	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997485	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	78	0	0	NA	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9987364	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	57	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9957689	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	93	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	100	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996445	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.315	24	0	0	NA	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9722712	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	59	0	0	NA	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4_p20	chr5	121576473	12A2p6	cell line	sgMsh2	121576473	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	113	0	0	NA	exonic	Aldh2	nonsynonymous SNV	"Aldh2:NM_001308450:exon5:c.G542A:p.C181Y,Aldh2:NM_009656:exon5:c.G542A:p.C181Y"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.552607256	2	0.9989756	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	121828483	12A2p6	cell line	sgMsh2	121828483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.556	9	0	0	NA	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.A567G:p.A189A,Sh2b3:NM_008507:exon2:c.A567G:p.A189A,Sh2b3:NM_001306126:exon3:c.A567G:p.A189A,Sh2b3:NM_001306127:exon3:c.A567G:p.A189A"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.935888	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	48	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	9.17E-07	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	123174447	12A2p6	cell line	sgMsh2	123174447	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	101	0	0	NA	exonic	Hpd	synonymous SNV	Hpd:NM_008277:exon12:c.G858T:p.T286T	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996644	CCG	synonymous	NA	NA	NA	NA
M4_p20	chr5	123531190	12A2p6	cell line	sgMsh2	123531190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	0	0	NA	exonic	Vps33a	synonymous SNV	"Vps33a:NM_001359513:exon12:c.A1509G:p.V503V,Vps33a:NM_029929:exon13:c.A1647G:p.V549V"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.09365801	ATA	synonymous	A	5	AAAAA	NA
M4_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.538	205	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999992	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	152	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999823	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	93	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	186	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999975	GTG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	77	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	124123607	12A2p6	cell line	sgMsh2	124123607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	78	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon19:c.C2891T:p.S964F,Pitpnm2:NM_011256:exon19:c.C2729T:p.S910F"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9987364	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	280	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.20E-08	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr5	124573100	12A2p6	cell line	sgMsh2	124573100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	166	0	0	NA	exonic	Eif2b1	nonsynonymous SNV	Eif2b1:NM_145371:exon7:c.A605G:p.E202G	5qF	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999921	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	127609024	12A2p6	cell line	sgMsh2	127609024	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.361	58	0	0	NA	exonic	Slc15a4	frameshift deletion	Slc15a4:NM_133895:exon2:c.593delT:p.F198Sfs*15	5qG1.2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	125	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	131	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999405	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr5	135852233	12A2p6	cell line	sgMsh2	135852233	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.25	23	0	0	NA	exonic	Srrm3	nonsynonymous SNV	Srrm3:NM_021403:exon4:c.A386G:p.Y129C	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9706714	TAC	nonsynonymous	ACCC	8	ACCCACCC	NA
M4_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	200	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	137112773	12A2p6	cell line	sgMsh2	137112773	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	62	0	0	NA	exonic	Trim56	nonsynonymous SNV	Trim56:NM_201373:exon3:c.T1888G:p.S630A	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.486950949	2	0.009398683	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	93	0	0	NA	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	195	0	0	NA	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	214	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	139353881	12A2p6	cell line	sgMsh2	139353881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	71	0	0	NA	exonic	Cyp2w1	synonymous SNV	Cyp2w1:NM_001160265:exon2:c.A225G:p.G75G	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr5	140785542	12A2p6	cell line	sgMsh2	140785542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	80	0	0	NA	exonic	Gna12	nonsynonymous SNV	Gna12:NM_010302:exon2:c.A374G:p.H125R	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	142878786	12A2p6	cell line	sgMsh2	142878786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	94	0	0	NA	exonic	Fbxl18	synonymous SNV	Fbxl18:NM_001033312:exon4:c.C1839T:p.R613R	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994976	TGC	synonymous	NA	NA	NA	NA
M4_p20	chr5	143315036	12A2p6	cell line	sgMsh2	143315036	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	25	0	0	NA	exonic	E130309D02Rik	nonsynonymous SNV	E130309D02Rik:NM_172726:exon1:c.T59G:p.V20G	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9737857	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Strelka2;Vardict	2	0.2308	13	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M4_p20	chr5	143899235	12A2p6	cell line	sgMsh2	143899235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	93	0	0	NA	exonic	Eif2ak1	synonymous SNV	Eif2ak1:NM_013557:exon13:c.A1626G:p.Q542Q	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994678	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr5	144173959	12A2p6	cell line	sgMsh2	144173959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	67	0	0	NA	exonic	Lmtk2	nonsynonymous SNV	Lmtk2:NM_001081109:exon11:c.A1496G:p.Y499C	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.211	133	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999947	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.207	128	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999293	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	349	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.21E-09	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	73	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	190	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344463-151647482	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999998	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.551	85	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M4_p20	chr6	3372931	12A2p6	cell line	sgMsh2	3372931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	204	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.A4329G:p.I1443M	6qA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	241	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9972254	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	142	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9998646	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M4_p20	chr6	3692638	12A2p6	cell line	sgMsh2	3692638	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	153	0	0	NA	exonic	Calcr	synonymous SNV	"Calcr:NM_001042725:exon13:c.G1104T:p.L368L,Calcr:NM_001355192:exon13:c.G1104T:p.L368L,Calcr:NM_001377018:exon14:c.G1215T:p.L405L,Calcr:NM_007588:exon14:c.G1215T:p.L405L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999833	GCA	synonymous	NA	NA	NA	NA
M4_p20	chr6	4522458	12A2p6	cell line	sgMsh2	4522458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	124	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon24:c.C1385T:p.P462L	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9988066	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	270	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9993194	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M4_p20	chr6	4730086	12A2p6	cell line	sgMsh2	4730086	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	202	0	0	NA	exonic	Sgce	nonsynonymous SNV	Sgce:NM_001130188:exon2:c.T137G:p.I46R	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.519779103	2	0.999729	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	61	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	164	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	2	0.9999638	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	274	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.9999767	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.168	235	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	1	0.9999291	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M4_p20	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	173	0	0	NA	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.9985728	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	93	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9316529	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M4_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	363	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	2	8.46E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	170	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	2	0.8263921	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	14717889	12A2p6	cell line	sgMsh2	14717889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	310	0	0	NA	exonic	Ppp1r3a	nonsynonymous SNV	Ppp1r3a:NM_080464:exon4:c.G3025A:p.G1009S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.859003359	1	0.9971116	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	371	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9999062	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	267	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.705805308	2	0.9996528	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.127	276	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	2	0.9999076	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	528	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.728	365	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	4	1	1	1.08E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M4_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	263	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	2	0.8495251	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	24743656	12A2p6	cell line	sgMsh2	24743656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	167	0	0	NA	exonic	Hyal6	synonymous SNV	Hyal6:NM_028920:exon4:c.T1350C:p.P450P	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.640149	2	0.9995623	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	24876131	12A2p6	cell line	sgMsh2	24876131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	199	0	0	NA	exonic	Hyal5	nonsynonymous SNV	Hyal5:NM_028957:exon2:c.T2C:p.M1T	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	25688581	12A2p6	cell line	sgMsh2	25688581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	137	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon1:c.A516C:p.R172S	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.705805308	2	0.9538763	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	29399449	12A2p6	cell line	sgMsh2	29399449	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	69	0	0	NA	exonic	Ccdc136	nonsynonymous SNV	"Ccdc136:NM_001201378:exon2:c.G139T:p.G47W,Ccdc136:NM_145574:exon2:c.G139T:p.G47W,Ccdc136:NM_001347071:exon3:c.G415T:p.G139W,Ccdc136:NM_001347072:exon3:c.G415T:p.G139W,Ccdc136:NM_001347073:exon3:c.G415T:p.G139W"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	70	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.651091718	2	9.95E-05	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	30585022	12A2p6	cell line	sgMsh2	30585022	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	115	0	0	NA	exonic	Cpa4	synonymous SNV	Cpa4:NM_027926:exon9:c.T804C:p.S268S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9654481	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	153	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	0.9994173	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	292	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9999999	AAC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	177	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.558078615	2	0.9999828	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	38298021	12A2p6	cell line	sgMsh2	38298021	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	92	0	0	NA	exonic	Zc3hav1l	synonymous SNV	Zc3hav1l:NM_172467:exon2:c.G444A:p.G148G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	GCC	synonymous	C	5	CCCCC	NA
M4_p20	chr6	38387600	12A2p6	cell line	sgMsh2	38387600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	348	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon4:c.T238C:p.Y80H	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.999987	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	246	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.999964	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	38482509	12A2p6	cell line	sgMsh2	38482509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	281	0	0	NA	exonic	Ubn2	synonymous SNV	Ubn2:NM_177185:exon10:c.A1680G:p.Q560Q	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.14E-08	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	281	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9999725	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	76	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9985821	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M4_p20	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	51	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9940294	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	321	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.6973505	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	259	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9868564	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	40658269	12A2p6	cell line	sgMsh2	40658269	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	152	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon9:c.A1008G:p.E336E,Mgam:NM_001368875:exon9:c.A1008G:p.E336E"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.426766	3	8.41E-09	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	249	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.547135898	2	0.9999985	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	777	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.815232487	1	0.5784161	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	262	0	0	NA	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.21E-08	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	41697358	12A2p6	cell line	sgMsh2	41697358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	129	0	0	NA	exonic	Kel	synonymous SNV	Kel:NM_032540:exon10:c.A1137G:p.R379R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9950678	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Vardict	2	0.111	71	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	236	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	ACG	synonymous	NA	NA	NA	NA
M4_p20	chr6	42400778	12A2p6	cell line	sgMsh2	42400778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	286	0	0	NA	exonic	Tas2r143	nonsynonymous SNV	Tas2r143:NM_001001452:exon1:c.T541C:p.S181P	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	2	3.06E-08	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	42471981	12A2p6	cell line	sgMsh2	42471981	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	388	0	0	NA	exonic	Olfr457	synonymous SNV	Olfr457:NM_146987:exon1:c.C196T:p.L66L	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	144	0	0	NA	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999719	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	120	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9990978	ATG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr6	42927635	12A2p6	cell line	sgMsh2	42927635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	446	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.T403C:p.W135R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	2	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999995	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	531	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	1.77E-08	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	43274065	12A2p6	cell line	sgMsh2	43274065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	126	0	0	NA	exonic	Arhgef5	synonymous SNV	Arhgef5:NM_133674:exon2:c.T1749C:p.T583T	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.662034436	2	0.9879291	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	180	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.9980983	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	77	0	0	NA	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	49	0	0	NA	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	138	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	0.9648615	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	108	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	48835581	12A2p6	cell line	sgMsh2	48835581	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	280	0	0	NA	exonic	Tmem176b	nonsynonymous SNV	"Tmem176b:NM_001164207:exon5:c.T449A:p.V150D,Tmem176b:NM_001164208:exon5:c.T449A:p.V150D,Tmem176b:NM_001286652:exon5:c.T449A:p.V150D,Tmem176b:NM_023056:exon5:c.T449A:p.V150D,Tmem176b:NM_001164209:exon6:c.T449A:p.V150D,Tmem176b:NM_001286651:exon6:c.T449A:p.V150D"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.771461615	2	0.9228236	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	49437428	12A2p6	cell line	sgMsh2	49437428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	211	0	0	NA	exonic	Stk31	nonsynonymous SNV	"Stk31:NM_001381960:exon12:c.T1426C:p.F476L,Stk31:NM_029916:exon12:c.T1495C:p.F499L"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	50222875	12A2p6	cell line	sgMsh2	50222875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	93	0	0	NA	exonic	Gsdme	synonymous SNV	Gsdme:NM_018769:exon6:c.T723C:p.H241H	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9915344	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	94	0	0	NA	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994976	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	51451075	12A2p6	cell line	sgMsh2	51451075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	157	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon2:c.A616G:p.T206A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	2	0.9999332	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	51457447	12A2p6	cell line	sgMsh2	51457447	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	304	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.C986A:p.P329H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.738633462	2	0.9978179	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	51457902	12A2p6	cell line	sgMsh2	51457902	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	233	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.T1441G:p.S481A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.997115	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	51478452	12A2p6	cell line	sgMsh2	51478452	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	76	0	0	NA	exonic	Cbx3	nonsynonymous SNV	"Cbx3:NM_001355002:exon4:c.G182T:p.W61L,Cbx3:NM_007624:exon4:c.G182T:p.W61L"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	56	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	55679064	12A2p6	cell line	sgMsh2	55679064	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	173	0	0	NA	exonic	Neurod6	nonsynonymous SNV	Neurod6:NM_009717:exon2:c.C587T:p.A196V	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	1	0.8876725	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	56851461	12A2p6	cell line	sgMsh2	56851461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	357	0	0	NA	exonic	Fkbp9	synonymous SNV	Fkbp9:NM_012056:exon4:c.T657C:p.R219R	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	1	0.8759802	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	706	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.787875692	2	0.996964	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	434	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.601849487	2	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	273	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.9968737	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	250	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	179	0	0	NA	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M4_p20	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.197	187	0	0	NA	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999977	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	328	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.886360154	1	0.9998735	GTA	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr6	58944196	12A2p6	cell line	sgMsh2	58944196	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	114	0	0	NA	exonic	Fam13a	frameshift deletion	Fam13a:NM_153574:exon15:c.1581delC:p.S528Pfs*23	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4_p20	chr6	59210223	12A2p6	cell line	sgMsh2	59210223	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	164	0	0	NA	exonic	Tigd2	nonsynonymous SNV	Tigd2:NM_001081145:exon2:c.G74A:p.G25D	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.7121014	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	146	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.497893667	2	0.9911768	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.042	439	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.229797077	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	470	0	0	NA	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.9723009	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	164	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999911	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	266	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.848060641	1	0.9875878	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	317	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.492422308	2	0.9991936	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	131	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9990771	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.096	90	0	0	NA	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.525250462	2	0.991616	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	86	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	0.9969582	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.145	161	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	1	0.6552873	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	77641445	12A2p6	cell line	sgMsh2	77641445	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	72	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon5:c.A494C:p.N165T,Ctnna2:NM_009819:exon5:c.A494C:p.N165T,Ctnna2:NM_001109764:exon6:c.A494C:p.N165T,Ctnna2:NM_145732:exon6:c.A494C:p.N165T"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9982147	ATT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr6	77845565	12A2p6	cell line	sgMsh2	77845565	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	211	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon2:c.T15A:p.T5T,Ctnna2:NM_009819:exon2:c.T15A:p.T5T,Ctnna2:NM_001109764:exon3:c.T15A:p.T5T,Ctnna2:NM_145732:exon3:c.T15A:p.T5T"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.618263564	2	0.9999928	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr6	80021802	12A2p6	cell line	sgMsh2	80021802	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	266	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.G196T:p.G66C,Lrrtm4:NM_001282102:exon2:c.G196T:p.G66C,Lrrtm4:NM_001347261:exon2:c.G193T:p.G65C,Lrrtm4:NM_178731:exon2:c.G193T:p.G65C"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.57E-08	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	144	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999719	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	74	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	163	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9999107	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	83161721	12A2p6	cell line	sgMsh2	83161721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	73	0	0	NA	exonic	1700003E16Rik	synonymous SNV	1700003E16Rik:NM_027948:exon4:c.A627G:p.V209V	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9983146	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	127	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	83795226	12A2p6	cell line	sgMsh2	83795226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	183	0	0	NA	exonic	Nagk	nonsynonymous SNV	Nagk:NM_001347315:exon1:c.A61G:p.T21A	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.393937846	3	0.9923985	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	85696602	12A2p6	cell line	sgMsh2	85696602	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	297	0	0	NA	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon19:c.A9178C:p.S3060R	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.497893667	2	0.9995345	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	110	0	0	NA	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998003	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	276	0	0	NA	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999999	CAA	synonymous	NA	NA	NA	NA
M4_p20	chr6	86722595	12A2p6	cell line	sgMsh2	86722595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	90	0	0	NA	exonic	Gmcl1	nonsynonymous SNV	Gmcl1:NM_011818:exon3:c.T449G:p.I150S	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993673	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	87646167	12A2p6	cell line	sgMsh2	87646167	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	270	0	0	NA	exonic	Aplf	nonsynonymous SNV	"Aplf:NM_001170489:exon7:c.C992A:p.P331H,Aplf:NM_001372332:exon7:c.C992A:p.P331H,Aplf:NM_024251:exon7:c.C929A:p.P310H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.935602385	1	0.9999944	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	197	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9170568	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M4_p20	chr6	87749190	12A2p6	cell line	sgMsh2	87749190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	127	0	0	NA	exonic	Efcc1	nonsynonymous SNV	Efcc1:NM_001159697:exon3:c.A970G:p.N324D	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	141	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.776932974	1	0.5199719	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	73	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.508836385	2	0.9716795	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.213	18	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9612222	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	89322886	12A2p6	cell line	sgMsh2	89322886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	180	0	0	NA	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon28:c.C4900A:p.L1634I	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.672977154	2	0.9986187	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	90305116	12A2p6	cell line	sgMsh2	90305116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	150	0	0	NA	exonic	BC048671	nonsynonymous SNV	"BC048671:NM_001358298:exon4:c.A254G:p.Y85C,BC048671:NM_177738:exon5:c.A254G:p.Y85C"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	1	0.5531003	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	90309104	12A2p6	cell line	sgMsh2	90309104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	166	0	0	NA	exonic	Chst13	nonsynonymous SNV	Chst13:NM_027928:exon3:c.A875G:p.K292R	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999921	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	528	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.755047539	2	0.999919	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	91479573	12A2p6	cell line	sgMsh2	91479573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	291	0	0	NA	exonic	Tmem43	synonymous SNV	Tmem43:NM_028766:exon5:c.T393C:p.S131S	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	2	0.8360012	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	91504643	12A2p6	cell line	sgMsh2	91504643	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	176	0	0	NA	exonic	Xpc	nonsynonymous SNV	Xpc:NM_009531:exon6:c.T695A:p.I232N	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	1	0.9650349	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	179	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.69486259	2	0.994836	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	92458494	12A2p6	cell line	sgMsh2	92458494	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	48	0	0	NA	exonic	Prickle2	frameshift deletion	"Prickle2:NM_001134459:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001134460:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001134461:exon2:c.125delC:p.P42Qfs*2,Prickle2:NM_001081146:exon3:c.293delC:p.P98Qfs*2"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4_p20	chr6	93785549	12A2p6	cell line	sgMsh2	93785549	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	198	0	0	NA	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon4:c.G174T:p.Q58H,Magi1:NM_001083321:exon4:c.G174T:p.Q58H,Magi1:NM_001286788:exon4:c.G174T:p.Q58H,Magi1:NM_001029850:exon5:c.G855T:p.Q285H,Magi1:NM_001286784:exon5:c.G855T:p.Q285H,Magi1:NM_001286785:exon5:c.G855T:p.Q285H,Magi1:NM_001286786:exon5:c.G855T:p.Q285H,Magi1:NM_010367:exon5:c.G855T:p.Q285H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.820703846	1	0.8861423	TCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	276	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.48E-08	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	99726305	12A2p6	cell line	sgMsh2	99726305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	51	0	0	NA	exonic	Prok2	nonsynonymous SNV	"Prok2:NM_001037539:exon1:c.T16G:p.C6G,Prok2:NM_001170419:exon1:c.T16G:p.C6G,Prok2:NM_015768:exon1:c.T16G:p.C6G"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9940294	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	451	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	101377670	12A2p6	cell line	sgMsh2	101377670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	0	0	NA	exonic	Pdzrn3	synonymous SNV	Pdzrn3:NM_018884:exon1:c.T219C:p.R73R	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9970032	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	205	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	97	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995774	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	127	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	1	0.9525297	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M4_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	117	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998667	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	111495826	12A2p6	cell line	sgMsh2	111495826	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	269	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon9:c.G2625A:p.R875R,Grm7:NM_177328:exon9:c.G2625A:p.R875R"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.842589282	1	0.9805996	GGC	synonymous	NA	NA	NA	NA
M4_p20	chr6	112310674	12A2p6	cell line	sgMsh2	112310674	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	135	0	0	NA	exonic	Lmcd1	nonsynonymous SNV	Lmcd1:NM_144799:exon3:c.C320T:p.T107I	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999528	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	247	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.465065513	2	0.0913007	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	113428126	12A2p6	cell line	sgMsh2	113428126	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	153	0	0	NA	exonic	Cidec	synonymous SNV	"Cidec:NM_001301295:exon5:c.C552T:p.I184I,Cidec:NM_001372264:exon5:c.C582T:p.I194I,Cidec:NM_178373:exon5:c.C552T:p.I184I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.53619318	2	0.9996709	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	69	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9978781	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	548	0	0	NA	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TTA	synonymous	NA	NA	NA	NA
M4_p20	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	173	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.758386	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	295	0	0	NA	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.63E-09	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	109	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	0.9993527	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	124	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.9743844	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	115780869	12A2p6	cell line	sgMsh2	115780869	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	150	0	0	NA	exonic	Cand2	nonsynonymous SNV	Cand2:NM_025958:exon2:c.A91C:p.M31L	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.421294641	3	0.8070435	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	116406061	12A2p6	cell line	sgMsh2	116406061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	246	0	0	NA	exonic	Marchf8	nonsynonymous SNV	"Marchf8:NM_001302384:exon7:c.T596G:p.V199G,Marchf8:NM_001302385:exon7:c.T479G:p.V160G,Marchf8:NM_027920:exon7:c.T596G:p.V199G,Marchf8:NM_001302383:exon8:c.T596G:p.V199G"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Vardict	2	0.126	110	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.689391231	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M4_p20	chr6	118405011	12A2p6	cell line	sgMsh2	118405011	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	89	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.A1565C:p.E522A	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9848847	CTC	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M4_p20	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	326	0	0	NA	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.9999994	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	118508623	12A2p6	cell line	sgMsh2	118508623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	205	0	0	NA	exonic	Ankrd26	nonsynonymous SNV	Ankrd26:NM_001081112:exon30:c.T4289C:p.V1430A	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.656563077	2	0.9998628	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	118511612	12A2p6	cell line	sgMsh2	118511612	T	-	Deletion	Mutect2;Vardict	2	0.103	90	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon29:c.4085delA:p.N1362Tfs*12	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.563549974	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M4_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Vardict	2	0.145	111	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	NA	NA	CGT	frameshift	NA	NA	NA	-1
M4_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	105	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9996924	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M4_p20	chr6	118776550	12A2p6	cell line	sgMsh2	118776550	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	39	0	0	NA	exonic	Cacna1c	frameshift deletion	"Cacna1c:NM_001159533:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001159534:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001159535:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001255997:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001255998:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001255999:exon5:c.714delT:p.F238Lfs*4,Cacna1c:NM_001256000:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001256001:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_001256002:exon5:c.624delT:p.F208Lfs*4,Cacna1c:NM_009781:exon5:c.714delT:p.F238Lfs*4"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr6	119937777	12A2p6	cell line	sgMsh2	119937777	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	300	0	0	NA	exonic	Wnk1	nonsynonymous SNV	"Wnk1:NM_001185020:exon22:c.A5063T:p.K1688M,Wnk1:NM_001185021:exon22:c.A5264T:p.K1755M,Wnk1:NM_001199083:exon24:c.A6557T:p.K2186M,Wnk1:NM_001199084:exon24:c.A6584T:p.K2195M,Wnk1:NM_198703:exon24:c.A5810T:p.K1937M"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.9999946	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	119953874	12A2p6	cell line	sgMsh2	119953874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	262	0	0	NA	exonic	Wnk1	nonsynonymous SNV	Wnk1:NM_198703:exon11:c.A2708G:p.H903R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.514307744	2	0.9999104	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	120481057	12A2p6	cell line	sgMsh2	120481057	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	175	0	0	NA	exonic	Il17ra	nonsynonymous SNV	Il17ra:NM_008359:exon13:c.C1168A:p.H390N	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	2	0.9618284	CCA	nonsynonymous	C	5	CCCCC	NA
M4_p20	chr6	121262660	12A2p6	cell line	sgMsh2	121262660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	271	0	0	NA	exonic	Usp18	nonsynonymous SNV	Usp18:NM_011909:exon8:c.T713C:p.V238A	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.95E-08	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.375	9	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.935888	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M4_p20	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.2077	183	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M4_p20	chr6	121641346	12A2p6	cell line	sgMsh2	121641346	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	251	0	0	NA	exonic	A2m	synonymous SNV	A2m:NM_175628:exon6:c.C597T:p.P199P	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CCC	synonymous	C	5	CCCCC	NA
M4_p20	chr6	121880873	12A2p6	cell line	sgMsh2	121880873	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	337	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon27:c.C3324A:p.T1108T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.9999988	CCA	synonymous	NA	NA	NA	NA
M4_p20	chr6	122316328	12A2p6	cell line	sgMsh2	122316328	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.139	266	0	0	NA	exonic	M6pr	nonsynonymous SNV	M6pr:NM_010749:exon7:c.G715T:p.D239Y	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.9606495	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	259	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.678448513	2	0.999953	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr6	122464187	12A2p6	cell line	sgMsh2	122464187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	197	0	0	NA	exonic	Rimklb	nonsynonymous SNV	Rimklb:NM_027664:exon3:c.T197C:p.L66P	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9999983	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	122562426	12A2p6	cell line	sgMsh2	122562426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	491	0	0	NA	exonic	Aicda	nonsynonymous SNV	Aicda:NM_009645:exon5:c.T550C:p.Y184H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.990315974	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	75	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.667505795	2	0.8332534	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	123315652	12A2p6	cell line	sgMsh2	123315652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	512	0	0	NA	exonic	Vmn2r19	synonymous SNV	Vmn2r19:NM_001104632:exon3:c.C652T:p.L218L	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.569021333	2	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr6	123336368	12A2p6	cell line	sgMsh2	123336368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	460	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.T2396C:p.I799T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	704	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	907	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	123787388	12A2p6	cell line	sgMsh2	123787388	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	634	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon3:c.C1223A:p.A408D	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.9792401	GCT	nonsynonymous	TGC	8	TGCTGCTG	NA
M4_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	899	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	74	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr6	124493160	12A2p6	cell line	sgMsh2	124493160	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	88	0	0	NA	exonic	C1rl	nonsynonymous SNV	C1rl:NM_181344:exon1:c.T10G:p.F4V	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9985028	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	49	0	0	NA	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	0.990723	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	124766255	12A2p6	cell line	sgMsh2	124766255	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	150	0	0	NA	exonic	Eno2	nonsynonymous SNV	"Eno2:NM_001355220:exon7:c.G517A:p.V173M,Eno2:NM_013509:exon7:c.G517A:p.V173M"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.519779103	2	0.9986108	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	75	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M4_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	179	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.629206282	2	0.9998863	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	393	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	134	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.432237359	3	0.5704613	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	200	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999989	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	126738607	12A2p6	cell line	sgMsh2	126738607	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	301	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T1318A:p.S440T	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.27E-09	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	126739613	12A2p6	cell line	sgMsh2	126739613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	106	0	0	NA	exonic	Kcna6	synonymous SNV	Kcna6:NM_013568:exon1:c.T312C:p.G104G	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	182	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.782404333	2	0.5510297	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	128366066	12A2p6	cell line	sgMsh2	128366066	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	80	0	0	NA	exonic	Foxm1	nonsynonymous SNV	Foxm1:NM_008021:exon2:c.C362A:p.P121H	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.623734923	2	0.9524385	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	87	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.979373257	1	0.9986526	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	61	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9943709	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	129429902	12A2p6	cell line	sgMsh2	129429902	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	238	0	0	NA	exonic	Clec1a	nonsynonymous SNV	Clec1a:NM_175526:exon5:c.T649A:p.S217T	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	129643176	12A2p6	cell line	sgMsh2	129643176	C	T	SNV	Mutect2;MuSe;Vardict	3	0.134	123	0	0	NA	exonic	Klrc3	nonsynonymous SNV	Klrc3:NM_021378:exon1:c.G113A:p.S38N	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.8027382	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	310	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	0.9999609	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr6	131376073	12A2p6	cell line	sgMsh2	131376073	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	79	0	0	NA	exonic	Ybx3	nonsynonymous SNV	Ybx3:NM_139117:exon6:c.G657C:p.Q219H	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	ACT	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr6	131630478	12A2p6	cell line	sgMsh2	131630478	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	173	0	0	NA	exonic	Tas2r130	nonsynonymous SNV	Tas2r130:NM_199156:exon1:c.T353G:p.L118R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999947	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	132572232	12A2p6	cell line	sgMsh2	132572232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	86	0	0	NA	exonic	Prh1	nonsynonymous SNV	Prh1:NM_011174:exon2:c.C701T:p.P234L	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992032	CCA	nonsynonymous	CCA	12	CCACCACCACCA	NA
M4_p20	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	153	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.9476472	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr6	132755481	12A2p6	cell line	sgMsh2	132755481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	260	0	0	NA	exonic	Tas2r124	nonsynonymous SNV	Tas2r124:NM_207026:exon1:c.T752C:p.V251A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.711276667	2	0.9992811	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	132777455	12A2p6	cell line	sgMsh2	132777455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	234	0	0	NA	exonic	Tas2r136	nonsynonymous SNV	Tas2r136:NM_181276:exon1:c.G708T:p.Q236H	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.672977154	2	0.9999	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	279	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.26E-08	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	70	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9953579	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	130	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9996986	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	123	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9954136	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	247	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9997182	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	185	0	0	NA	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	1	0.6021016	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	176	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.716748026	2	0.9798427	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	136329362	12A2p6	cell line	sgMsh2	136329362	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	204	0	0	NA	exonic	Eif4a3l1	nonsynonymous SNV	Eif4a3l1:NM_001142734:exon2:c.A820G:p.T274A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.723018	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	136401316	12A2p6	cell line	sgMsh2	136401316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	384	0	0	NA	exonic	E330021D16Rik	nonsynonymous SNV	E330021D16Rik:NM_001201390:exon2:c.T515C:p.L172P	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.672977154	2	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	187	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.6743449	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.165	284	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	1	0.9999308	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M4_p20	chr6	137514729	12A2p6	cell line	sgMsh2	137514729	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.268	91	0	0	NA	exonic	Eps8	nonsynonymous SNV	"Eps8:NM_001271589:exon4:c.A220C:p.K74Q,Eps8:NM_001271587:exon11:c.A1078C:p.K360Q,Eps8:NM_001271588:exon11:c.A1000C:p.K334Q,Eps8:NM_001271595:exon11:c.A1000C:p.K334Q,Eps8:NM_007945:exon12:c.A1000C:p.K334Q"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994027	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	243	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.700333949	2	0.9994397	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr6	140543950	12A2p6	cell line	sgMsh2	140543950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	123	0	0	NA	exonic	Plekha5	nonsynonymous SNV	Plekha5:NM_144920:exon11:c.A1079G:p.Y360C	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9994837	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	190	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.590906769	2	0.9999944	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	263	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.03E-08	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	501	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.733162103	2	0.9999959	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142360906	12A2p6	cell line	sgMsh2	142360906	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	416	0	0	NA	exonic	Pyroxd1	nonsynonymous SNV	Pyroxd1:NM_183165:exon11:c.G1158T:p.K386N	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	1.35E-08	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	410	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	161	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999895	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142463365	12A2p6	cell line	sgMsh2	142463365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	328	0	0	NA	exonic	Gys2	nonsynonymous SNV	Gys2:NM_145572:exon2:c.A163G:p.T55A	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.612792205	2	2.68E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142620745	12A2p6	cell line	sgMsh2	142620745	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	123	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon29:c.G3456T:p.Q1152H,Abcc9:NM_001310143:exon29:c.G3456T:p.Q1152H,Abcc9:NM_021042:exon29:c.G3390T:p.Q1130H,Abcc9:NM_011511:exon30:c.G3495T:p.Q1165H,Abcc9:NM_021041:exon30:c.G3495T:p.Q1165H"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999057	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	385	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	2	0.6903891	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	317	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M4_p20	chr6	143835296	12A2p6	cell line	sgMsh2	143835296	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	233	0	0	NA	exonic	Sox5	stopgain	"Sox5:NM_001347506:exon7:c.A775T:p.K259X,Sox5:NM_001113559:exon13:c.A1744T:p.K582X,Sox5:NM_001243163:exon13:c.A1636T:p.K546X,Sox5:NM_011444:exon14:c.A1888T:p.K630X"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	145039468	12A2p6	cell line	sgMsh2	145039468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	183	0	0	NA	exonic	Bcat1	synonymous SNV	"Bcat1:NM_001024468:exon3:c.T447C:p.H149H,Bcat1:NM_007532:exon3:c.T246C:p.H82H"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.913716949	1	0.9994977	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	116	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9095653	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	147101622	12A2p6	cell line	sgMsh2	147101623	CT	TC	DBS	Mutect2;Vardict	2	0.111	175	0	0	NA	exonic	Klhl42	nonframeshift substitution	Klhl42:NM_001081237:exon2:c.893_894TC:p.A298V	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	357	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chr7	3616061	12A2p6	cell line	sgMsh2	3616061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	87	0	0	NA	exonic	Oscar	nonsynonymous SNV	"Oscar:NM_001290377:exon1:c.T17C:p.I6T,Oscar:NM_175632:exon1:c.T17C:p.I6T"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	198	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	CGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	39	0	0	NA	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.9835636	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999801	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	533	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	260	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4_p20	chr7	4470855	12A2p6	cell line	sgMsh2	4470855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	56	0	0	NA	exonic	Eps8l1	synonymous SNV	"Eps8l1:NM_001290416:exon7:c.C477T:p.R159R,Eps8l1:NM_001374622:exon7:c.C660T:p.R220R,Eps8l1:NM_026146:exon7:c.C477T:p.R159R"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.373	7	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9280275	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M4_p20	chr7	4541081	12A2p6	cell line	sgMsh2	4541081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	76	0	0	NA	exonic	Syt5	nonsynonymous SNV	"Syt5:NM_001360421:exon8:c.A959G:p.Q320R,Syt5:NM_001360422:exon8:c.A959G:p.Q320R"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9985821	CTG	nonsynonymous	CACCTG	12	CACCTGCACCTG	NA
M4_p20	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	90	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993673	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	53	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	342	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.31E-09	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	183	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9999287	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	653	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AGC	synonymous	NA	NA	NA	NA
M4_p20	chr7	6460824	12A2p6	cell line	sgMsh2	6460824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T314C:p.L105P	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999985	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	414	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	6514620	12A2p6	cell line	sgMsh2	6514620	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	118	0	0	NA	exonic	Olfr1349	nonsynonymous SNV	Olfr1349:NM_207136:exon1:c.C808T:p.R270C	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998741	CGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	6515134	12A2p6	cell line	sgMsh2	6515134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	61	0	0	NA	exonic	Olfr1349	synonymous SNV	Olfr1349:NM_207136:exon1:c.A294G:p.G98G	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	200	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	208	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9989484	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	161	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-7297085	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999895	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	9986490	12A2p6	cell line	sgMsh2	9986490	A	G	SNV	Mutect2;Vardict	2	0.07	948	0	0	NA	exonic	Vmn2r49	nonsynonymous SNV	Vmn2r49:NM_001105156:exon3:c.T1073C:p.I358T	7qA1	chr7-7312117-9989431	8.34230094	6.34230094	2	0.9	4.924223078	RARE KARYOTYPE	1	0.382995128	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	10053061	12A2p6	cell line	sgMsh2	10053061	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.602	146	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon1:c.G118A:p.G40R	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999975	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	10100105	12A2p6	cell line	sgMsh2	10100105	A	C	SNV	Mutect2;Vardict	2	0.08	456	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.T1005G:p.N335K	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.437708718	3	0.9837661	AAT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr7	10169124	12A2p6	cell line	sgMsh2	10169124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	360	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.T1376C:p.I459T	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.11E-09	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	185	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999974	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	11756416	12A2p6	cell line	sgMsh2	11756416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	261	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A160G:p.N54D	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.39E-08	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	271	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.837117923	1	0.969343	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M4_p20	chr7	12629678	12A2p6	cell line	sgMsh2	12629678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	262	0	0	NA	exonic	Vmn2r54	synonymous SNV	Vmn2r54:NM_001384946:exon4:c.T1503C:p.D501D	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.21E-08	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	93	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994678	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	90	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9993673	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	14236620	12A2p6	cell line	sgMsh2	14236620	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	743	0	0	NA	exonic	Sult2a6	nonsynonymous SNV	Sult2a6:NM_001081325:exon4:c.T550C:p.Y184H	7qA1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	20	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9653132	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	15988394	12A2p6	cell line	sgMsh2	15988394	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	37	0	0	NA	exonic	Bicra	synonymous SNV	Bicra:NM_001081418:exon5:c.T1197G:p.T399T	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9867087	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	314	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	3.38E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	16833031	12A2p6	cell line	sgMsh2	16833031	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	115	0	0	NA	exonic	Strn4	nonsynonymous SNV	"Strn4:NM_001039878:exon10:c.G1354A:p.A452T,Strn4:NM_133789:exon10:c.G1375A:p.A459T"	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998503	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	16886406	12A2p6	cell line	sgMsh2	16886406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	0	0	NA	exonic	Dact3	nonsynonymous SNV	Dact3:NM_001081655:exon4:c.A1825G:p.T609A	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998409	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	16908970	12A2p6	cell line	sgMsh2	16908970	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.211	61	0	0	NA	exonic	Ptgir	synonymous SNV	Ptgir:NM_008967:exon2:c.T1104C:p.A368A	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	CTA	synonymous	AAGG	8	AAGGAAGG	NA
M4_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	489	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M4_p20	chr7	18684588	12A2p6	cell line	sgMsh2	18684588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	507	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon2:c.T253C:p.Y85H	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.036	456	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.196968923	3	1	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	73	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9953904	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	22	0	0	NA	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9689818	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	153	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.172	236	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9999872	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	23418347	12A2p6	cell line	sgMsh2	23418347	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001039143:exon7:c.C1447T:p.L483L,Nlrp5:NM_001305857:exon7:c.C1495T:p.L499L,Nlrp5:NM_011860:exon8:c.C1495T:p.L499L"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	24126040	12A2p6	cell line	sgMsh2	24126040	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.229	112	0	0	NA	exonic	Zfp112	nonsynonymous SNV	Zfp112:NM_021307:exon5:c.A1444G:p.S482G	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998221	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	24570538	12A2p6	cell line	sgMsh2	24570538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	43	0	0	NA	exonic	Xrcc1	synonymous SNV	"Xrcc1:NM_001360169:exon11:c.A1098G:p.P366P,Xrcc1:NM_001360168:exon13:c.A1380G:p.P460P,Xrcc1:NM_009532:exon13:c.A1383G:p.P461P"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9905608	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	42	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.941073744	1	0.9779247	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	24	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9722712	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M4_p20	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	287	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	8.34E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	26462565	12A2p6	cell line	sgMsh2	26462565	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	360	0	0	NA	exonic	Nlrp4a	synonymous SNV	"Nlrp4a:NM_001362156:exon9:c.G2637A:p.L879L,Nlrp4a:NM_172896:exon9:c.G2637A:p.L879L"	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.11E-09	TGC	synonymous	NA	NA	NA	NA
M4_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	209	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	104	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M4_p20	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9790761	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	28107439	12A2p6	cell line	sgMsh2	28107439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	105	0	0	NA	exonic	Fcgbp	synonymous SNV	Fcgbp:NM_001122603:exon16:c.A6831G:p.A2277A	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997336	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	171	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	61	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9966379	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	28814227	12A2p6	cell line	sgMsh2	28814227	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	200	0	0	NA	exonic	Hnrnpl	nonsynonymous SNV	Hnrnpl:NM_177301:exon4:c.C641A:p.P214H	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999989	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	28894591	12A2p6	cell line	sgMsh2	28894591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	98	0	0	NA	exonic	Actn4	nonsynonymous SNV	"Actn4:NM_001360548:exon20:c.A2490C:p.Q830H,Actn4:NM_001360549:exon20:c.A2475C:p.Q825H,Actn4:NM_021895:exon20:c.A2490C:p.Q830H,Actn4:NM_001360550:exon21:c.A1701C:p.Q567H"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	183	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	29061581	12A2p6	cell line	sgMsh2	29061581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	56	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon65:c.A9615G:p.A3205A	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9955188	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	237	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	20	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9653132	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M4_p20	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	24	0	0	NA	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9722712	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	124	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999911	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr7	30715068	12A2p6	cell line	sgMsh2	30715068	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	81	0	0	NA	exonic	Atp4a	nonsynonymous SNV	"Atp4a:NM_001290627:exon5:c.A515C:p.K172T,Atp4a:NM_018731:exon5:c.A515C:p.K172T"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9971852	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	46	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.992049	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	274	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.65E-08	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	283	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M4_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	124	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999911	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	80	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998874	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	35	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9851073	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	134	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.99995	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M4_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	253	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	117	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998667	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	41648224	12A2p6	cell line	sgMsh2	41648224	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	270	0	0	NA	exonic	Zfp788	nonsynonymous SNV	"Zfp788:NM_001360678:exon4:c.A223G:p.T75A,Zfp788:NM_001360681:exon4:c.A127G:p.T43A,Zfp788:NM_001360674:exon5:c.A283G:p.T95A,Zfp788:NM_001360677:exon5:c.A238G:p.T80A,Zfp788:NM_001360680:exon5:c.A127G:p.T43A,Zfp788:NM_001360683:exon5:c.A127G:p.T43A,Zfp788:NM_001360684:exon5:c.A127G:p.T43A,Zfp788:NM_001360675:exon6:c.A283G:p.T95A,Zfp788:NM_023363:exon6:c.A127G:p.T43A"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.06E-08	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	42046819	12A2p6	cell line	sgMsh2	42046819	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	263	0	0	NA	exonic	Vmn2r59	synonymous SNV	Vmn2r59:NM_001105056:exon2:c.T498G:p.P166P	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.03E-08	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	736	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	42195170	12A2p6	cell line	sgMsh2	42195170	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	647	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon6:c.C1956T:p.T652T	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	43467545	12A2p6	cell line	sgMsh2	43467545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	38	0	0	NA	exonic	Vsig10l	synonymous SNV	"Vsig10l:NM_001290316:exon6:c.A1503G:p.Q501Q,Vsig10l:NM_001368881:exon6:c.A1809G:p.Q603Q"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9874444	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	136	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.919188308	1	0.9984139	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	43847495	12A2p6	cell line	sgMsh2	43847495	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	109	0	0	NA	exonic	Klk5	nonsynonymous SNV	Klk5:NM_026806:exon4:c.G650T:p.R217M	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997885	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	44253406	12A2p6	cell line	sgMsh2	44253406	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	48	0	0	NA	exonic	Acp4	nonsynonymous SNV	Acp4:NM_001195034:exon10:c.T1037C:p.L346P	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9929093	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	108	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997759	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	44	0	0	NA	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.727690744	1	8.33E-05	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	158	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999875	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	44943425	12A2p6	cell line	sgMsh2	44943425	A	-	Deletion	Strelka2;Vardict	2	0.3611	36	0	0	NA	exonic	Tsks	frameshift deletion	"Tsks:NM_001077591:exon1:c.142delA:p.K50Rfs*21,Tsks:NM_011651:exon1:c.142delA:p.K50Rfs*21"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4_p20	chr7	45000839	12A2p6	cell line	sgMsh2	45000853	GGGCTGGGCAATGGG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	106	0	0	NA	exonic	Irf3	nonframeshift deletion	Irf3:NM_016849:exon6:c.778_792del:p.G260_G264del	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AGG	inframe	NA	NA	NA	-15
M4_p20	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.722	25	0	0	NA	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9737857	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	55	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9952539	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	152	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999823	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	198	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	45800919	12A2p6	cell line	sgMsh2	45800919	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	35	0	0	NA	exonic	Lmtk3	nonsynonymous SNV	"Lmtk3:NM_001290990:exon14:c.T4128G:p.S1376R,Lmtk3:NM_001005511:exon15:c.T4128G:p.S1376R"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9851073	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	66	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.864474718	1	0.9557154	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	118	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998741	CCT	synonymous	CTG	8	CTGCTGCT	NA
M4_p20	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	140	0	0	NA	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999646	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.25	115	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.269	112	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998221	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	228	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	GTG	synonymous	GT	8	GTGTGTGT	NA
M4_p20	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	166	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999921	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	138	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999603	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	56230919	12A2p6	cell line	sgMsh2	56230919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon93:c.T14298C:p.F4766F,Herc2:NM_010418:exon93:c.T14298C:p.F4766F"	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.9999905	TTC	synonymous	TTCT	8	TTCTTTCT	NA
M4_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	332	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.55E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	125	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999159	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	63099665	12A2p6	cell line	sgMsh2	63099665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	79	0	0	NA	exonic	Chrna7	synonymous SNV	Chrna7:NM_007390:exon10:c.T1068C:p.A356A	7qC	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	AAG	synonymous	GCCG	8	GCCGGCCG	NA
M4_p20	chr7	64248315	12A2p6	cell line	sgMsh2	64248315	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	71	0	0	NA	exonic	Trpm1	nonsynonymous SNV	Trpm1:NM_001039104:exon26:c.A3695C:p.E1232A	7qC	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9981089	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	479	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	219	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	CAG	synonymous	AGA	8	AGAAGAAG	NA
M4_p20	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	162	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9970429	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	80238957	12A2p6	cell line	sgMsh2	80238957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	60	0	0	NA	exonic	Gdpgp1	nonsynonymous SNV	Gdpgp1:NM_178752:exon2:c.A735G:p.I245M	7qD2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9964389	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	37	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9867087	GCC	synonymous	NA	NA	NA	NA
M4_p20	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	56	0	0	NA	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9955188	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	149	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999789	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	79	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	67	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9976192	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	252	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	71	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	192	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999982	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	84856666	12A2p6	cell line	sgMsh2	84856666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	410	0	0	NA	exonic	Olfr291	nonsynonymous SNV	Olfr291:NM_146415:exon3:c.T302C:p.L101S	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	282	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.08E-08	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	85234520	12A2p6	cell line	sgMsh2	85234520	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	276	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon2:c.T376G:p.Y126D	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	2	0.9876166	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	85623945	12A2p6	cell line	sgMsh2	85623945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	366	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon6:c.T1954C:p.F652L	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.08E-09	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	86165071	12A2p6	cell line	sgMsh2	86165071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	552	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.T1213C:p.S405P	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	520	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M4_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	159	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999882	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	410	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr7	86616391	12A2p6	cell line	sgMsh2	86616391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	219	0	0	NA	exonic	Olfr294	nonsynonymous SNV	Olfr294:NM_001011750:exon1:c.A253G:p.T85A	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.418	163	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M4_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	501	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	86920249	12A2p6	cell line	sgMsh2	86920249	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	163	0	0	NA	exonic	Vmn2r78	frameshift deletion	Vmn2r78:NM_001105189:exon2:c.349delA:p.K119Rfs*15	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M4_p20	chr7	87002361	12A2p6	cell line	sgMsh2	87002361	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	487	0	0	NA	exonic	Vmn2r79	nonsynonymous SNV	Vmn2r79:NM_001105190:exon3:c.A967G:p.M323V	7qD3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	269	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.17E-08	TAA	synonymous	A	5	AAAAA	NA
M4_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	272	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.84E-08	ATT	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	199	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	TCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	100	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	0.9995924	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	137	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999174	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	98710164	12A2p6	cell line	sgMsh2	98710164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	304	0	0	NA	exonic	Thap12	synonymous SNV	Thap12:NM_028410:exon3:c.A249G:p.P83P	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.75E-09	CAA	synonymous	NA	NA	NA	NA
M4_p20	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	38	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9874444	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	70	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9979968	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	100259961	12A2p6	cell line	sgMsh2	100259961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	225	0	0	NA	exonic	Pgm2l1	synonymous SNV	Pgm2l1:NM_027629:exon6:c.A633G:p.E211E	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	68	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9977524	CAG	synonymous	CAG	8	CAGCAGCA	NA
M4_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	70	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9979968	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	102000334	12A2p6	cell line	sgMsh2	102000334	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	32	0	0	NA	exonic	Numa1	frameshift deletion	Numa1:NM_133947:exon14:c.3271delG:p.G1092Vfs*36	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M4_p20	chr7	102001125	12A2p6	cell line	sgMsh2	102001125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	16	0	0	NA	exonic	Numa1	synonymous SNV	Numa1:NM_133947:exon14:c.T4062C:p.S1354S	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9566587	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	164	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999911	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	164	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.74957618	2	0.8481652	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	162	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999901	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	198	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	213	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999995	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	249	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	512	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	103732555	12A2p6	cell line	sgMsh2	103732555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	605	0	0	NA	exonic	Olfr628	nonsynonymous SNV	Olfr628:NM_147097:exon1:c.C628T:p.L210F	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	103947175	12A2p6	cell line	sgMsh2	103947175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	244	0	0	NA	exonic	Olfr633	nonsynonymous SNV	Olfr633:NM_146354:exon1:c.T608C:p.V203A	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	104068260	12A2p6	cell line	sgMsh2	104068260	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	247	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.A770C:p.K257T	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	CTT	nonsynonymous	ACCT	8	ACCTACCT	NA
M4_p20	chr7	104141731	12A2p6	cell line	sgMsh2	104141731	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	197	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.C1220A:p.P407H,Ubqln3:NM_198623:exon2:c.C1151A:p.P384H"	7qE3	chr7-9991672-104249879	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999987	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	233	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	226	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	353	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.16E-09	TCC	synonymous	NA	NA	NA	NA
M4_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	649	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	104841298	12A2p6	cell line	sgMsh2	104841298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	548	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.A418G:p.T140A,Usp17lb:NM_201409:exon2:c.A421G:p.T141A"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	104881101	12A2p6	cell line	sgMsh2	104881101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	578	0	0	NA	exonic	Olfr665	synonymous SNV	Olfr665:NM_146814:exon1:c.A393G:p.P131P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	104916819	12A2p6	cell line	sgMsh2	104916819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	272	0	0	NA	exonic	Olfr667	nonsynonymous SNV	Olfr667:NM_147060:exon1:c.T476C:p.L159P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.84E-08	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M4_p20	chr7	104939220	12A2p6	cell line	sgMsh2	104939220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	453	0	0	NA	exonic	Olfr669	synonymous SNV	Olfr669:NM_147043:exon1:c.C693T:p.S231S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	114	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998415	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	127	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4_p20	chr7	106689451	12A2p6	cell line	sgMsh2	106689451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	649	0	0	NA	exonic	Olfr694	synonymous SNV	Olfr694:NM_146452:exon1:c.A279G:p.S93S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr7	106790922	12A2p6	cell line	sgMsh2	106790922	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	302	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.G78A:p.L26L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.09E-09	GCA	synonymous	NA	NA	NA	NA
M4_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	284	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	9.73E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr7	106845189	12A2p6	cell line	sgMsh2	106845189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	375	0	0	NA	exonic	Olfr703	nonsynonymous SNV	Olfr703:NM_146596:exon1:c.T577C:p.S193P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.05E-09	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	106845245	12A2p6	cell line	sgMsh2	106845245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	291	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.T633C:p.L211L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	6.83E-09	TTG	synonymous	NA	NA	NA	NA
M4_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	300	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.47E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	107128741	12A2p6	cell line	sgMsh2	107128741	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	378	0	0	NA	exonic	Olfr715	synonymous SNV	Olfr715:NM_146780:exon1:c.C651A:p.S217S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.04E-09	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	639	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M4_p20	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	600	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AAA	synonymous	AATG	8	AATGAATG	NA
M4_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	299	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.67E-09	ATG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	159	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999882	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	108124824	12A2p6	cell line	sgMsh2	108124824	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	289	0	0	NA	exonic	Olfr484	synonymous SNV	Olfr484:NM_146499:exon1:c.G438A:p.Q146Q	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	7.54E-09	ACT	synonymous	CAAC	8	CAACCAAC	NA
M4_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	284	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	9.73E-09	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	108287124	12A2p6	cell line	sgMsh2	108287124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	280	0	0	NA	exonic	Olfr490	nonsynonymous SNV	Olfr490:NM_146498:exon1:c.A1G:p.M1V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.20E-08	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	614	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	108368425	12A2p6	cell line	sgMsh2	108368425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	384	0	0	NA	exonic	Olfr494	nonsynonymous SNV	Olfr494:NM_146737:exon1:c.A934G:p.M312V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.03E-09	AAT	nonsynonymous	GAAA	8	GAAAGAAA	NA
M4_p20	chr7	108423139	12A2p6	cell line	sgMsh2	108423139	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	430	0	0	NA	exonic	Olfr497	synonymous SNV	Olfr497:NM_146738:exon1:c.A567G:p.E189E	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.22	468	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	108825371	12A2p6	cell line	sgMsh2	108825371	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	293	0	0	NA	exonic	Olfr514	frameshift deletion	Olfr514:NM_146726:exon1:c.627delC:p.F210Sfs*2	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M4_p20	chr7	109336109	12A2p6	cell line	sgMsh2	109336109	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	282	0	0	NA	exonic	Stk33	nonsynonymous SNV	"Stk33:NM_001355145:exon3:c.G106A:p.V36M,Stk33:NM_054103:exon6:c.G475A:p.V159M"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.08E-08	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	110047063	12A2p6	cell line	sgMsh2	110047063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	257	0	0	NA	exonic	Ipo7	synonymous SNV	"Ipo7:NM_001362172:exon15:c.T1668C:p.D556D,Ipo7:NM_181517:exon15:c.T1668C:p.D556D"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.24E-08	ATG	synonymous	ATG	8	ATGATGAT	NA
M4_p20	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	86	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9992032	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	98	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9996011	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	112381939	12A2p6	cell line	sgMsh2	112381939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	90	0	0	NA	exonic	Micalcl	synonymous SNV	"Micalcl:NM_001381862:exon4:c.A1119G:p.T373T,Micalcl:NM_027587:exon4:c.A1119G:p.T373T"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9993673	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	548	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	210	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	118184633	12A2p6	cell line	sgMsh2	118184633	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	41	0	0	NA	exonic	Smg1	nonsynonymous SNV	Smg1:NM_001031814:exon22:c.T3029C:p.I1010T	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9894186	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	118195821	12A2p6	cell line	sgMsh2	118195821	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	188	0	0	NA	exonic	Smg1	stopgain	Smg1:NM_001031814:exon11:c.T1502A:p.L501X	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.448651436	2	0.6276302	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	225	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	299	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.67E-09	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	119951765	12A2p6	cell line	sgMsh2	119951765	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	132	0	0	NA	exonic	Dnah3	synonymous SNV	Dnah3:NM_001370806:exon52:c.G9297A:p.L3099L	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	1	0.999828	TCA	synonymous	NA	NA	NA	NA
M4_p20	chr7	123001421	12A2p6	cell line	sgMsh2	123001421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	73	0	0	NA	exonic	Rbbp6	synonymous SNV	Rbbp6:NM_011247:exon18:c.A4650G:p.E1550E	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9983146	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	30	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.980226	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	123179823	12A2p6	cell line	sgMsh2	123179823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	153	0	0	NA	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon12:c.A3756G:p.K1252K	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	158	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999875	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	49	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9933041	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	127474715	12A2p6	cell line	sgMsh2	127474715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	79	0	0	NA	exonic	Prr14	synonymous SNV	Prr14:NM_145589:exon6:c.A750G:p.V250V	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	127549720	12A2p6	cell line	sgMsh2	127549720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	0	0	NA	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon27:c.A6112C:p.I2038L	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999833	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	65	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9973289	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	23	0	0	NA	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9706714	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	40	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9887973	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	283	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9999571	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;MuSe;Vardict	3	0.139	105	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	1	0.5134627	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;MuSe;Vardict	3	0.097	159	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.530721821	2	0.9995905	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	74	0	0	NA	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998409	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999603	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr7	128446198	12A2p6	cell line	sgMsh2	128446198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	178	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon6:c.A444G:p.K148K,Tial1:NM_009383:exon6:c.A495G:p.K165K,Tial1:NM_001347641:exon7:c.A327G:p.K109K"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999996	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr7	129390951	12A2p6	cell line	sgMsh2	129390951	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.227	111	0	0	NA	exonic	Plpp4	nonsynonymous SNV	Plpp4:NM_001080963:exon7:c.T712C:p.Y238H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998115	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	127	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999251	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	130743554	12A2p6	cell line	sgMsh2	130743554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	92	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_021314:exon10:c.A2171T:p.E724V,Tacc2:NM_206856:exon13:c.A2501T:p.E834V,Tacc2:NM_001004468:exon14:c.A7700T:p.E2567V"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994362	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	131074450	12A2p6	cell line	sgMsh2	131074450	T	G	SNV	Mutect2;MuSe;Vardict	3	0.101	429	0	0	NA	exonic	Dmbt1	synonymous SNV	"Dmbt1:NM_007769:exon20:c.T2034G:p.L678L,Dmbt1:NM_001347632:exon21:c.T2067G:p.L689L"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	0.552607256	2	1.10E-09	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	180	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999965	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	132991616	12A2p6	cell line	sgMsh2	132991616	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	229	0	0	NA	exonic	Ctbp2	nonsynonymous SNV	"Ctbp2:NM_001170744:exon5:c.C2355G:p.H785Q,Ctbp2:NM_001347623:exon5:c.C651G:p.H217Q,Ctbp2:NM_009980:exon7:c.C726G:p.H242Q"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	91	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994027	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M4_p20	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	81	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998937	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	139582036	12A2p6	cell line	sgMsh2	139582036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	21	0	0	NA	exonic	Nkx6-2	nonsynonymous SNV	Nkx6-2:NM_183248:exon2:c.C424A:p.L142M	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9671975	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	139936998	12A2p6	cell line	sgMsh2	139936998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	257	0	0	NA	exonic	Kndc1	nonsynonymous SNV	Kndc1:NM_177261:exon29:c.A4789C:p.I1597L	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.24E-08	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	140176434	12A2p6	cell line	sgMsh2	140176434	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	140	0	0	NA	exonic	Olfr523	nonsynonymous SNV	Olfr523:NM_146518:exon1:c.T331A:p.Y111N	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999646	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	259	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.79E-08	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2048	83	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chr7	140922447	12A2p6	cell line	sgMsh2	140922447	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	114	0	0	NA	exonic	Nlrp6	nonsynonymous SNV	Nlrp6:NM_133946:exon4:c.G375T:p.Q125H	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998415	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	141432693	12A2p6	cell line	sgMsh2	141432693	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	62	0	0	NA	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon5:c.A263T:p.D88V,Slc25a22:NM_001360723:exon5:c.A263T:p.D88V,Slc25a22:NM_001360724:exon5:c.A4T:p.T2S,Slc25a22:NM_026646:exon5:c.A263T:p.D88V"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9968257	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	171	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	145	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr7	142678723	12A2p6	cell line	sgMsh2	142678723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	62	0	0	NA	exonic	Ins2	nonsynonymous SNV	"Ins2:NM_001185084:exon2:c.A323G:p.Y108C,Ins2:NM_001185083:exon3:c.A323G:p.Y108C,Ins2:NM_008387:exon3:c.A323G:p.Y108C"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	60	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9964389	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	59	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9962282	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	211	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	163	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999906	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr7	145261979	12A2p6	cell line	sgMsh2	145261979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	61	0	0	NA	exonic	Tpcn2	nonsynonymous SNV	Tpcn2:NM_146206:exon15:c.T1316C:p.L439P	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	3512744	12A2p6	cell line	sgMsh2	3512744	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	195	0	0	NA	exonic	Mcoln1	nonsynonymous SNV	Mcoln1:NM_053177:exon12:c.G1454A:p.G485D	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999985	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	576	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	3688831	12A2p6	cell line	sgMsh2	3688831	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.178	163	0	0	NA	exonic	Fcer2a	frameshift insertion	"Fcer2a:NM_001253737:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253739:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253746:exon4:c.222dupA:p.F75Ifs*3,Fcer2a:NM_001253747:exon4:c.105dupA:p.F36Ifs*3,Fcer2a:NM_001253743:exon5:c.144dupA:p.F49Ifs*3,Fcer2a:NM_013517:exon5:c.225dupA:p.F76Ifs*3"	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.973901898	NA	NA	AAT	frameshift	T	5	TTTTT	1
M4_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	162	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999901	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	668	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M4_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	289	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	0.9999994	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	138	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999603	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	324	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.87E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	100	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996445	TCG	synonymous	NA	NA	NA	NA
M4_p20	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	186	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999975	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	13781433	12A2p6	cell line	sgMsh2	13781433	A	-	Deletion	Mutect2;Vardict	2	0.164	156	0	0	NA	exonic	Cdc16	frameshift deletion	"Cdc16:NM_001357247:exon17:c.1383delA:p.N463Tfs*13,Cdc16:NM_027276:exon18:c.1665delA:p.N557Tfs*13"	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	220	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.703563	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	16234128	12A2p6	cell line	sgMsh2	16234128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	77	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon13:c.A1615G:p.T539A	8qA1.2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9986615	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	276	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.48E-08	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	36	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9859304	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	127	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	23180916	12A2p6	cell line	sgMsh2	23180916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	604	0	0	NA	exonic	Gpat4	synonymous SNV	Gpat4:NM_018743:exon6:c.A645G:p.L215L	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	TTA	synonymous	NA	NA	NA	NA
M4_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	348	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.22E-09	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	292	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M4_p20	chr8	24922292	12A2p6	cell line	sgMsh2	24922292	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.118	65	0	0	NA	exonic	Adam32	stopgain	"Adam32:NM_001293693:exon4:c.G247T:p.G83X,Adam32:NM_153397:exon4:c.G247T:p.G83X"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.645620359	2	0.8272443	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	97	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9995774	AGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	25817606	12A2p6	cell line	sgMsh2	25817606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	264	0	0	NA	exonic	Ash2l	nonsynonymous SNV	"Ash2l:NM_001080793:exon15:c.C1495T:p.P499S,Ash2l:NM_001286207:exon15:c.C1495T:p.P499S,Ash2l:NM_011791:exon15:c.C1762T:p.P588S,Ash2l:NM_001359012:exon16:c.C1780T:p.P594S"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.87E-08	GGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	214	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	71	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	99	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996234	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	145	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999735	GGG	synonymous	NA	NA	NA	NA
M4_p20	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	142	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.601849487	2	0.9996677	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr8	41259226	12A2p6	cell line	sgMsh2	41259226	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	247	0	0	NA	exonic	Pcm1	nonsynonymous SNV	Pcm1:NM_023662:exon4:c.G532A:p.A178T	8qA4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	TGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	1100	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	813	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	189	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999979	TTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	108	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M4_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	151	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999812	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	53599412	12A2p6	cell line	sgMsh2	53599412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	336	0	0	NA	exonic	Neil3	nonsynonymous SNV	Neil3:NM_146208:exon8:c.A1150G:p.T384A	8qB1.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.43E-09	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	313	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	3.52E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	223	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	227	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	ACG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	60671704	12A2p6	cell line	sgMsh2	60671704	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	199	0	0	NA	exonic	Mfap3l	synonymous SNV	"Mfap3l:NM_001293769:exon2:c.A670C:p.R224R,Mfap3l:NM_001177881:exon3:c.A979C:p.R327R,Mfap3l:NM_001177882:exon3:c.A979C:p.R327R,Mfap3l:NM_027756:exon3:c.A979C:p.R327R"	8qB3.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999988	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr8	64117910	12A2p6	cell line	sgMsh2	64117910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	122	0	0	NA	exonic	Tll1	synonymous SNV	Tll1:NM_009390:exon5:c.T627C:p.P209P	8qB3.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999001	AAG	synonymous	NA	NA	NA	NA
M4_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	66704013	12A2p6	cell line	sgMsh2	66704013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	218	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon2:c.A84G:p.E28E,Npy1r:NM_001358955:exon3:c.A84G:p.E28E"	8qB3.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999996	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	214	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	69102178	12A2p6	cell line	sgMsh2	69102178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	405	0	0	NA	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon5:c.G400A:p.G134R	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	CGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	331	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.58E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	69881218	12A2p6	cell line	sgMsh2	69881218	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	62	0	0	NA	exonic	Cilp2	synonymous SNV	Cilp2:NM_026818:exon8:c.C3129T:p.L1043L	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9968257	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	192	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999982	CGA	synonymous	NA	NA	NA	NA
M4_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	188	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999978	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	70402451	12A2p6	cell line	sgMsh2	70402451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	99	0	0	NA	exonic	Crtc1	nonsynonymous SNV	Crtc1:NM_001004062:exon5:c.A518G:p.Q173R	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.809761128	1	0.8532205	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	70451561	12A2p6	cell line	sgMsh2	70451561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	262	0	0	NA	exonic	Klhl26	synonymous SNV	"Klhl26:NM_001122830:exon2:c.A1515G:p.T505T,Klhl26:NM_178771:exon3:c.A1698G:p.T566T,Klhl26:NM_001364258:exon4:c.A1455G:p.T485T"	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.21E-08	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	284	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.995787333	1	1.39E-08	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	71545799	12A2p6	cell line	sgMsh2	71545799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	80	0	0	NA	exonic	Mvb12a	nonsynonymous SNV	Mvb12a:NM_028617:exon6:c.T577C:p.S193P	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998874	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	71634633	12A2p6	cell line	sgMsh2	71634633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	76	0	0	NA	exonic	Unc13a	nonsynonymous SNV	Unc13a:NM_001029873:exon39:c.A4469G:p.K1490R	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9979393	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	120	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998878	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M4_p20	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	106	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	113	0	0	NA	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999832	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	75629738	12A2p6	cell line	sgMsh2	75629738	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	254	0	0	NA	exonic	Iqcm	synonymous SNV	"Iqcm:NM_027944:exon6:c.C498T:p.H166H,Iqcm:NM_001164235:exon7:c.C498T:p.H166H"	8qC1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.03E-08	ACA	synonymous	NA	NA	NA	NA
M4_p20	chr8	77187587	12A2p6	cell line	sgMsh2	77187587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	305	0	0	NA	exonic	Nr3c2	synonymous SNV	Nr3c2:NM_001083906:exon6:c.G2421A:p.S807S	8qC1	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.60E-09	CGT	synonymous	NA	NA	NA	NA
M4_p20	chr8	80663502	12A2p6	cell line	sgMsh2	80663502	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	217	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon3:c.G5381T:p.G1794V	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	180	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999965	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.204	146	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999975	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M4_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	244	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	83730210	12A2p6	cell line	sgMsh2	83730210	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	176	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163030:exon5:c.C406A:p.H136N,Adgre5:NM_011925:exon6:c.C541A:p.H181N"	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999956	TGG	nonsynonymous	GTGG	8	GTGGGTGG	NA
M4_p20	chr8	84029454	12A2p6	cell line	sgMsh2	84029454	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	141	0	0	NA	exonic	Palm3	nonsynonymous SNV	Palm3:NM_028877:exon7:c.A1594G:p.T532A	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999666	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	84228924	12A2p6	cell line	sgMsh2	84228924	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	169	0	0	NA	exonic	Zswim4	nonsynonymous SNV	Zswim4:NM_172503:exon5:c.G865C:p.A289P	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.306396103	3	0.9999958	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	26	0	0	NA	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.9752194	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	85009334	12A2p6	cell line	sgMsh2	85009334	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	371	0	0	NA	exonic	Best2	nonsynonymous SNV	Best2:NM_001130194:exon9:c.G970A:p.E324K	8qC3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.06E-09	TCA	nonsynonymous	CATCT	10	CATCTCATCT	NA
M4_p20	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9960051	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	302	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.09E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	71	0	0	NA	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9981089	TTT	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	443	0	0	NA	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-92679113	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ATC	synonymous	NA	NA	NA	NA
M4_p20	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	215	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999995	CAA	synonymous	NA	NA	NA	NA
M4_p20	chr8	93370095	12A2p6	cell line	sgMsh2	93370095	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	338	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon4:c.C504A:p.T168T	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.39E-09	TGG	synonymous	NA	NA	NA	NA
M4_p20	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	103	0	0	NA	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999701	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	92	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994362	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	94558251	12A2p6	cell line	sgMsh2	94558251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	147	0	0	NA	exonic	Cpne2	nonsynonymous SNV	Cpne2:NM_153507:exon11:c.T1054C:p.Y352H	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999764	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	113	0	0	NA	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.804289769	1	0.8176783	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	95076264	12A2p6	cell line	sgMsh2	95076264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	76	0	0	NA	exonic	Drc7	synonymous SNV	Drc7:NM_001042715:exon16:c.T2217C:p.H739H	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr8	95105773	12A2p6	cell line	sgMsh2	95105773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	267	0	0	NA	exonic	Kifc3	nonsynonymous SNV	"Kifc3:NM_001145832:exon10:c.G1147T:p.V383F,Kifc3:NM_001372315:exon12:c.G1558T:p.V520F,Kifc3:NM_010631:exon12:c.G1558T:p.V520F,Kifc3:NM_001372316:exon13:c.G1345T:p.V449F,Kifc3:NM_001372317:exon13:c.G1345T:p.V449F,Kifc3:NM_001145831:exon14:c.G1420T:p.V474F,Kifc3:NM_001372312:exon14:c.G2026T:p.V676F,Kifc3:NM_001372314:exon14:c.G1879T:p.V627F,Kifc3:NM_001372313:exon15:c.G1879T:p.V627F"	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.760518898	2	0.9614053	ACA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	133	0	0	NA	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999947	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	493	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	260	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.59E-08	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	235	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.957487821	1	0.9999962	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	670	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1	GAC	synonymous	NA	NA	NA	NA
M4_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	166	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.984844616	1	0.9999821	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	105522171	12A2p6	cell line	sgMsh2	105522171	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	195	0	0	NA	exonic	Hsd11b2	synonymous SNV	Hsd11b2:NM_008289:exon2:c.A294C:p.T98T	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.924659667	1	0.9998241	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	232	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M4_p20	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	261	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.39E-08	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	307	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	3.32E-09	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	205	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999992	GGC	synonymous	NA	NA	NA	NA
M4_p20	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	53	0	0	NA	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9946766	GCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	132	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999439	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	137	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999579	GAG	synonymous	NA	NA	NA	NA
M4_p20	chr8	108955670	12A2p6	cell line	sgMsh2	108955670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	31	0	0	NA	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon10:c.A9740G:p.K3247R	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9813139	AAG	nonsynonymous	GAAAG	20	GAAAGGAAAGGAGAAGGAAA	NA
M4_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	226	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M4_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	547	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M4_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	287	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9998934	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	113	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999832	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	221	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	81	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.998937	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	111994956	12A2p6	cell line	sgMsh2	111994956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	0	0	NA	exonic	Kars	nonsynonymous SNV	"Kars:NM_053092:exon13:c.A1597G:p.T533A,Kars:NM_001130868:exon14:c.A1684G:p.T562A,Kars:NM_001286384:exon15:c.A1684G:p.T562A,Kars:NM_001363429:exon15:c.A1684G:p.T562A,Kars:NM_001363430:exon16:c.A1684G:p.T562A"	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999969	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	112733443	12A2p6	cell line	sgMsh2	112733443	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon4:c.G427A:p.V143I	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999989	CGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	119876704	12A2p6	cell line	sgMsh2	119876704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	81	0	0	NA	exonic	Klhl36	nonsynonymous SNV	Klhl36:NM_146219:exon5:c.A1697G:p.Y566C	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	127	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999251	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	164	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M4_p20	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	97	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9750759	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	122501337	12A2p6	cell line	sgMsh2	122501337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	266	0	0	NA	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon9:c.C1118T:p.A373V,Piezo1:NM_001357349:exon9:c.C1121T:p.A374V"	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	2.57E-08	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	149	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999789	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	122621686	12A2p6	cell line	sgMsh2	122621686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	160	0	0	NA	exonic	Pabpn1l	nonsynonymous SNV	Pabpn1l:NM_001007462:exon3:c.A409G:p.N137D	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999888	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	108	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997759	GGC	synonymous	NA	NA	NA	NA
M4_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	287	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	8.34E-09	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M4_p20	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	157	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999867	CCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	257	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.946545103	1	0.9999964	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	124035177	12A2p6	cell line	sgMsh2	124035177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	216	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon5:c.T3784C:p.S1262P,Urb2:NM_001368414:exon5:c.T3784C:p.S1262P"	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999996	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	76	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	1	0.891831513	1	0.9798479	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr8	127603121	12A2p6	cell line	sgMsh2	127603121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	84	0	0	NA	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon23:c.A3552G:p.Q1184Q,Pard3:NM_001309391:exon24:c.A3597G:p.Q1199Q,Pard3:NM_001363431:exon24:c.A3507G:p.Q1169Q,Pard3:NM_001363432:exon24:c.A3603G:p.Q1201Q,Pard3:NM_033620:exon24:c.A3594G:p.Q1198Q"	8qE2	chr8-92827332-129138455	6	3	3	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9991058	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	123	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	412	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	GGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	170	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999937	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	246	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999999	ATG	synonymous	GAT	8	GATGATGA	NA
M4_p20	chr9	6359783	12A2p6	cell line	sgMsh2	6359783	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	164	0	0	NA	exonic	Pdgfd	synonymous SNV	"Pdgfd:NM_001357397:exon6:c.C835T:p.L279L,Pdgfd:NM_027924:exon6:c.C853T:p.L285L"	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999911	GCT	synonymous	AGCTGA	12	AGCTGAAGCTGA	NA
M4_p20	chr9	7049114	12A2p6	cell line	sgMsh2	7049114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	254	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon63:c.T9785G:p.L3262R	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.03E-08	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	7144178	12A2p6	cell line	sgMsh2	7144178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	173	0	0	NA	exonic	Dync2h1	frameshift deletion	Dync2h1:NM_029851:exon22:c.3262delA:p.I1088Lfs*8	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	395	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	8643537	12A2p6	cell line	sgMsh2	8643537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	177	0	0	NA	exonic	Trpc6	nonsynonymous SNV	"Trpc6:NM_001282086:exon5:c.A1322G:p.K441R,Trpc6:NM_013838:exon5:c.A1322G:p.K441R"	9qA1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999958	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.303	162	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999901	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	199	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999988	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	15996162	12A2p6	cell line	sgMsh2	15996162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	291	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.T8555C:p.L2852P	9qA2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	6.83E-09	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	153	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M4_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	229	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9999967	TAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	20897968	12A2p6	cell line	sgMsh2	20897968	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	229	0	0	NA	exonic	Eif3g	nonsynonymous SNV	Eif3g:NM_016876:exon4:c.C160A:p.P54T	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.793347051	2	0.5010035	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	114	0	0	NA	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998415	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	98	0	0	NA	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9996011	CAA	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr9	21299309	12A2p6	cell line	sgMsh2	21299309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	67	0	0	NA	exonic	Ap1m2	synonymous SNV	"Ap1m2:NM_001110300:exon8:c.T1023C:p.N341N,Ap1m2:NM_009678:exon8:c.T1017C:p.N339N"	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9976192	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	92	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994362	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	21509305	12A2p6	cell line	sgMsh2	21509305	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	149	0	0	NA	exonic	Tmed1	nonsynonymous SNV	"Tmed1:NM_001324510:exon2:c.C104A:p.P35H,Tmed1:NM_010744:exon2:c.C230A:p.P77H"	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999789	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	67	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9976192	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M4_p20	chr9	26756860	12A2p6	cell line	sgMsh2	26756860	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	155	0	0	NA	exonic	B3gat1	nonsynonymous SNV	"B3gat1:NM_029792:exon3:c.C745T:p.R249W,B3gat1:NM_001310766:exon5:c.C784T:p.R262W"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999851	CCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	26881782	12A2p6	cell line	sgMsh2	26881782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	83	0	0	NA	exonic	Gm1110	nonsynonymous SNV	Gm1110:NM_001281475:exon18:c.A1697G:p.Q566R	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9990527	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	228	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	152	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999823	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M4_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	48	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9929093	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	126	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999207	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	66	0	0	NA	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9974782	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	97	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995774	CGC	synonymous	NA	NA	NA	NA
M4_p20	chr9	32255664	12A2p6	cell line	sgMsh2	32255664	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	142	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon11:c.T1596C:p.S532S,Arhgap32:NM_001195632:exon20:c.T2643C:p.S881S,Arhgap32:NM_001370957:exon20:c.T2523C:p.S841S,Arhgap32:NM_001370958:exon21:c.T2565C:p.S855S"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999685	CTT	synonymous	NA	NA	NA	NA
M4_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	424	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr9	32649380	12A2p6	cell line	sgMsh2	32649380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	171	0	0	NA	exonic	Ets1	nonsynonymous SNV	Ets1:NM_001372534:exon2:c.A11G:p.Y4C	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	35188787	12A2p6	cell line	sgMsh2	35188787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	54	0	0	NA	exonic	Tirap	nonsynonymous SNV	"Tirap:NM_001177845:exon6:c.G600T:p.E200D,Tirap:NM_001177846:exon6:c.G600T:p.E200D,Tirap:NM_001177847:exon6:c.G600T:p.E200D,Tirap:NM_054096:exon6:c.G600T:p.E200D"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9949735	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	35554568	12A2p6	cell line	sgMsh2	35554568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	149	0	0	NA	exonic	Ddx25	nonsynonymous SNV	Ddx25:NM_013932:exon5:c.A356G:p.N119S	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999789	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	261	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.39E-08	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr9	36581832	12A2p6	cell line	sgMsh2	36581832	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	171	0	0	NA	exonic	Pate8	nonsynonymous SNV	Pate8:NM_001167584:exon2:c.A193T:p.T65S	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999941	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	37410489	12A2p6	cell line	sgMsh2	37410489	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	43	0	0	NA	exonic	Robo4	stopgain	Robo4:NM_028783:exon13:c.G2059T:p.G687X	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.9312144	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	67	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.853532	1	0.945166	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	185	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999974	TAT	synonymous	NA	NA	NA	NA
M4_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	414	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.952016462	1	4.08E-09	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	155	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.902774231	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M4_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	277	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.41E-08	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38179889	12A2p6	cell line	sgMsh2	38179889	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Olfr891	nonsynonymous SNV	Olfr891:NM_146478:exon1:c.A933T:p.E311D	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994362	ATT	nonsynonymous	TCAC	9	TCACTCACT	NA
M4_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	615	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	491	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
M4_p20	chr9	38607056	12A2p6	cell line	sgMsh2	38607056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	650	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.T590C:p.I197T	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38607351	12A2p6	cell line	sgMsh2	38607351	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	207	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.A885C:p.K295N	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	347	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.23E-09	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	433	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	388	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-09	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	353	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.16E-09	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	294	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.90E-09	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39019219	12A2p6	cell line	sgMsh2	39019219	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	522	0	0	NA	exonic	Olfr146	frameshift deletion	Olfr146:NM_146747:exon1:c.321delT:p.F107Lfs*39	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	232	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999998	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39144108	12A2p6	cell line	sgMsh2	39144108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	116	0	0	NA	exonic	Olfr242;Olfr27	nonsynonymous SNV	"Olfr242:NM_010974:exon1:c.G7A:p.A3T,Olfr27:NM_146829:exon2:c.G7A:p.A3T"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998587	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	314	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	2.55E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	296	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	5.37E-09	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr9	39623427	12A2p6	cell line	sgMsh2	39623427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	501	0	0	NA	exonic	Olfr960	synonymous SNV	Olfr960:NM_146279:exon1:c.T303C:p.H101H	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9999493	ATT	synonymous	NA	NA	NA	NA
M4_p20	chr9	39623870	12A2p6	cell line	sgMsh2	39623870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	542	0	0	NA	exonic	Olfr960	nonsynonymous SNV	Olfr960:NM_146279:exon1:c.T746C:p.M249T	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	414	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	39942613	12A2p6	cell line	sgMsh2	39942613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	273	0	0	NA	exonic	Olfr974	nonsynonymous SNV	Olfr974:NM_147107:exon1:c.A352G:p.M118V	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.75E-08	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	40001162	12A2p6	cell line	sgMsh2	40001162	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	438	0	0	NA	exonic	Olfr979	nonsynonymous SNV	Olfr979:NM_147108:exon1:c.G64A:p.D22N	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.00E-09	TCC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	71	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9981089	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	171	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999941	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M4_p20	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	65	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9973289	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	42330269	12A2p6	cell line	sgMsh2	42330269	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon24:c.A6409T:p.I2137F,Tecta:NM_009347:exon24:c.A6424T:p.I2142F,Tecta:NM_001378602:exon25:c.A6424T:p.I2142F"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999995	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	183	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.999997	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	117	0	0	NA	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998667	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.213	19	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9633235	ACG	synonymous	NA	NA	NA	NA
M4_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	193	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M4_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	50	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9936771	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	44715884	12A2p6	cell line	sgMsh2	44715884	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	104	0	0	NA	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon6:c.C1263A:p.P421P	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997178	AGG	synonymous	NA	NA	NA	NA
M4_p20	chr9	45001018	12A2p6	cell line	sgMsh2	45001018	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	142	0	0	NA	exonic	Cd3e	nonsynonymous SNV	Cd3e:NM_007648:exon6:c.C427T:p.P143S	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999685	GGC	nonsynonymous	CTTGGC	15	CTTGGCCTTGGCCTT	NA
M4_p20	chr9	45255890	12A2p6	cell line	sgMsh2	45255890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	115	0	0	NA	exonic	Il10ra	synonymous SNV	"Il10ra:NM_001324486:exon7:c.A1362G:p.P454P,Il10ra:NM_008348:exon7:c.A1368G:p.P456P"	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998503	CTG	synonymous	NA	NA	NA	NA
M4_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	106	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997485	TGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	45775745	12A2p6	cell line	sgMsh2	45775745	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	53	0	0	NA	exonic	Cep164	nonsynonymous SNV	Cep164:NM_001081373:exon20:c.G2479A:p.E827K	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9946766	TCC	nonsynonymous	CTC	8	CTCCTCCT	NA
M4_p20	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	103	0	0	NA	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.869946077	1	0.9772258	CTC	synonymous	NA	NA	NA	NA
M4_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	81	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	GAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	49416677	12A2p6	cell line	sgMsh2	49416677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	59	0	0	NA	exonic	Ankk1	nonsynonymous SNV	"Ankk1:NM_001376951:exon8:c.G1204A:p.A402T,Ankk1:NM_172922:exon8:c.G1201A:p.A401T"	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9962282	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	335	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.46E-09	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	53398017	12A2p6	cell line	sgMsh2	53398017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	104	0	0	NA	exonic	Poglut3	nonsynonymous SNV	Poglut3:NM_212445:exon7:c.T1379C:p.V460A	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997178	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	290	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	7.18E-09	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	211	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999994	CAT	synonymous	NA	NA	NA	NA
M4_p20	chr9	54887394	12A2p6	cell line	sgMsh2	54887394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	318	0	0	NA	exonic	Ireb2	nonsynonymous SNV	Ireb2:NM_022655:exon8:c.T1013C:p.L338P	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.968430539	1	3.31E-08	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	55430309	12A2p6	cell line	sgMsh2	55430309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	13	0	0	NA	exonic	Tmem266	nonsynonymous SNV	"Tmem266:NM_001357568:exon9:c.A428G:p.Q143R,Tmem266:NM_172923:exon9:c.A803G:p.Q268R"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9487899	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	56114307	12A2p6	cell line	sgMsh2	56114307	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	84	0	0	NA	exonic	Pstpip1	nonsynonymous SNV	Pstpip1:NM_011193:exon2:c.T114G:p.D38E	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9991058	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	1018	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.196968923	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	343	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.29E-09	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M4_p20	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	49	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9933041	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	203	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999991	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	196	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M4_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	223	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	59344092	12A2p6	cell line	sgMsh2	59344092	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	176	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon3:c.C124T:p.H42Y,Bbs4:NM_175325:exon3:c.C124T:p.H42Y"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999956	TGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	59562999	12A2p6	cell line	sgMsh2	59562999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	111	0	0	NA	exonic	Hexa	nonsynonymous SNV	Hexa:NM_010421:exon11:c.T1276C:p.Y426H	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998115	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	168	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999993	GGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	189	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999979	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	104	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997178	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	17	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	3	1	1	0.959003	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	65322664	12A2p6	cell line	sgMsh2	65322664	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	364	0	0	NA	exonic	Clpx	synonymous SNV	"Clpx:NM_001044389:exon10:c.T1393C:p.L465L,Clpx:NM_011802:exon11:c.T1435C:p.L479L"	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.09E-09	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	389	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.02E-09	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	208	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999993	GTA	synonymous	NA	NA	NA	NA
M4_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	128	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999293	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M4_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	361	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.10E-09	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	43	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9905608	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	69408274	12A2p6	cell line	sgMsh2	69408274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	81	0	0	NA	exonic	Ice2	synonymous SNV	Ice2:NM_145618:exon5:c.T411C:p.H137H	9qC	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998937	ATG	synonymous	NA	NA	NA	NA
M4_p20	chr9	70034292	12A2p6	cell line	sgMsh2	70034292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	193	0	0	NA	exonic	Gcnt3	synonymous SNV	Gcnt3:NM_028087:exon3:c.T993C:p.L331L	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999983	AAA	synonymous	NA	NA	NA	NA
M4_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	105	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997336	GCT	synonymous	NA	NA	NA	NA
M4_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	94	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9994976	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	156	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999859	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	175	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999953	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	204	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999991	AAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Vardict	2	0.05	159	0	0	NA	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.273567949	3	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	255	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	4.75E-08	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	77001655	12A2p6	cell line	sgMsh2	77001655	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	408	0	0	NA	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon7:c.A1003C:p.K335Q	9qD	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	373	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.05E-09	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	197	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999987	TTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	169	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999934	GTT	synonymous	NA	NA	NA	NA
M4_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	254	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	5.03E-08	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.1887	53	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M4_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	126	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999207	TAG	synonymous	NA	NA	NA	NA
M4_p20	chr9	86574215	12A2p6	cell line	sgMsh2	86574215	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	123	0	0	NA	exonic	Rwdd2a	nonsynonymous SNV	"Rwdd2a:NM_001145968:exon3:c.C443T:p.A148V,Rwdd2a:NM_001145969:exon3:c.C443T:p.A148V,Rwdd2a:NM_027100:exon3:c.C443T:p.A148V"	9qE3.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999057	GCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	76	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9985821	TTT	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr9	91364036	12A2p6	cell line	sgMsh2	91364036	-	TA	Insertion	Mutect2;Strelka2;Vardict	3	0.243	102	0	0	NA	exonic	Zic1	stopgain	"Zic1:NM_009573:exon1:c.981_982insTA:p.G328fs*0,Zic1:NM_001376941:exon2:c.981_982insTA:p.G328fs*0"	9qE3.2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CCT	nonsynonymous	TG	9	TGTGTGTGT	2
M4_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	146	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.999975	GAA	nonsynonymous	T	5	TTTTT	NA
M4_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	227	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999998	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	205	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999992	TAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.394	59	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M4_p20	chr9	99289273	12A2p6	cell line	sgMsh2	99289273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	69	0	0	NA	exonic	Cep70	nonsynonymous SNV	Cep70:NM_023873:exon12:c.A1079G:p.Q360R	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.90824559	1	0.9836128	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	99698873	12A2p6	cell line	sgMsh2	99698873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	265	0	0	NA	exonic	Cldn18	synonymous SNV	"Cldn18:NM_001194921:exon2:c.T321C:p.G107G,Cldn18:NM_001194922:exon2:c.T321C:p.G107G,Cldn18:NM_001194923:exon2:c.T321C:p.G107G,Cldn18:NM_019815:exon2:c.T321C:p.G107G"	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	2.71E-08	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	368	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9998938	GAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	100985213	12A2p6	cell line	sgMsh2	100985213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	131	0	0	NA	exonic	Pccb	nonsynonymous SNV	"Pccb:NM_001311149:exon12:c.C1208T:p.A403V,Pccb:NM_025835:exon13:c.C1319T:p.A440V"	9qE4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999405	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	103263181	12A2p6	cell line	sgMsh2	103263181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	222	0	0	NA	exonic	1300017J02Rik	synonymous SNV	1300017J02Rik:NM_027918:exon12:c.T1338C:p.Y446Y	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999997	AAT	synonymous	NA	NA	NA	NA
M4_p20	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	396	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.01E-09	AAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	105073826	12A2p6	cell line	sgMsh2	105073826	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.228	235	0	0	NA	exonic	Mrpl3	frameshift insertion	"Mrpl3:NM_001364512:exon8:c.476dupA:p.N160Kfs*28,Mrpl3:NM_001364513:exon8:c.791dupA:p.N265Kfs*28,Mrpl3:NM_053159:exon8:c.791dupA:p.N265Kfs*28"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M4_p20	chr9	105774278	12A2p6	cell line	sgMsh2	105774278	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	211	0	0	NA	exonic	Col6a6	nonsynonymous SNV	"Col6a6:NM_001102607:exon8:c.G3533A:p.G1178D,Col6a6:NM_172927:exon8:c.G3533A:p.G1178D"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999994	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	189	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999979	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	129	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999333	CAA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	70	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9979968	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	87	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9992478	ACT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	106885214	12A2p6	cell line	sgMsh2	106885214	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	40	0	0	NA	exonic	Rbm15b	nonsynonymous SNV	Rbm15b:NM_175402:exon1:c.A1754C:p.K585T	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9887973	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	107514942	12A2p6	cell line	sgMsh2	107514942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	175	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174047:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174048:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174049:exon15:c.A1481G:p.D494G,Cacna2d2:NM_001174050:exon15:c.A1481G:p.D494G,Cacna2d2:NM_020263:exon15:c.A1481G:p.D494G"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999953	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	107526730	12A2p6	cell line	sgMsh2	107526730	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	74	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174048:exon35:c.G3026T:p.S1009I,Cacna2d2:NM_001174049:exon35:c.G3023T:p.S1008I,Cacna2d2:NM_001174050:exon35:c.G3026T:p.S1009I,Cacna2d2:NM_001174047:exon36:c.G3044T:p.S1015I,Cacna2d2:NM_020263:exon36:c.G3044T:p.S1015I"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998409	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	107584788	12A2p6	cell line	sgMsh2	107584788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	150	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T20C:p.L7P	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.79881841	1	0.7337598	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	136	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.662034436	2	0.9928029	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	107980081	12A2p6	cell line	sgMsh2	107980081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	136	0	0	NA	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon18:c.A2141G:p.H714R	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999554	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	206	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999992	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	167	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999925	CTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	108393319	12A2p6	cell line	sgMsh2	108393319	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	80	0	0	NA	exonic	1700102P08Rik	nonsynonymous SNV	1700102P08Rik:NM_053216:exon2:c.G81T:p.Q27H	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.897302872	1	0.9839598	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	108405043	12A2p6	cell line	sgMsh2	108405043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	93	0	0	NA	exonic	Iho1	nonsynonymous SNV	"Iho1:NM_001135198:exon8:c.A1445G:p.Q482R,Iho1:NM_001379658:exon8:c.A1445G:p.Q482R"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9994678	CTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.329	91	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M4_p20	chr9	108534385	12A2p6	cell line	sgMsh2	108534385	A	-	Deletion	Mutect2;Vardict	2	0.111	98	0	0	NA	exonic	Qrich1	frameshift deletion	"Qrich1:NM_175143:exon3:c.1108delA:p.N371Tfs*5,Qrich1:NM_001114119:exon4:c.1108delA:p.N371Tfs*5"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.607320846	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M4_p20	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	75	0	0	NA	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.998498	CCT	synonymous	NA	NA	NA	NA
M4_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	97	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995774	TAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	110	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998003	GTG	synonymous	NA	NA	NA	NA
M4_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	72	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.96295918	1	0.9957612	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	109082012	12A2p6	cell line	sgMsh2	109082012	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	82	0	0	NA	exonic	Tma7	nonsynonymous SNV	Tma7:NM_183250:exon3:c.G150T:p.K50N	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9989965	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	109690589	12A2p6	cell line	sgMsh2	109690589	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	272	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon7:c.T848C:p.V283A	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	1.84E-08	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	110086218	12A2p6	cell line	sgMsh2	110086218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	127	0	0	NA	exonic	Dhx30	synonymous SNV	"Dhx30:NM_001252683:exon12:c.C2482A:p.R828R,Dhx30:NM_133347:exon15:c.C2464A:p.R822R,Dhx30:NM_001252682:exon16:c.C2395A:p.R799R"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999251	CGG	synonymous	NA	NA	NA	NA
M4_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	283	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	1.02E-08	GCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	110380285	12A2p6	cell line	sgMsh2	110380285	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	39	0	0	NA	exonic	Scap	synonymous SNV	"Scap:NM_001001144:exon14:c.T2025A:p.G675G,Scap:NM_001103162:exon14:c.T2025A:p.G675G"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9881399	GTC	synonymous	NA	NA	NA	NA
M4_p20	chr9	110384099	12A2p6	cell line	sgMsh2	110384099	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	126	0	0	NA	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon21:c.A3331G:p.T1111A,Scap:NM_001103162:exon21:c.A3331G:p.T1111A"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999207	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	247	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.880888795	1	0.9989477	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M4_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	119	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998812	ATA	synonymous	NA	NA	NA	NA
M4_p20	chr9	110632808	12A2p6	cell line	sgMsh2	110632808	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	79	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.T4580C:p.L1527P	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9988072	CAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	78	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9987364	GGA	nonsynonymous	G	5	GGGGG	NA
M4_p20	chr9	110636320	12A2p6	cell line	sgMsh2	110636320	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	61	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon20:c.C2930T:p.A977V	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9966379	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	110722545	12A2p6	cell line	sgMsh2	110722545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	96	0	0	NA	exonic	Pth1r	synonymous SNV	"Pth1r:NM_001083936:exon14:c.C1485T:p.S495S,Pth1r:NM_001083935:exon15:c.C1485T:p.S495S,Pth1r:NM_011199:exon16:c.C1485T:p.S495S"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	AGC	synonymous	TAGCTG	12	TAGCTGTAGCTG	NA
M4_p20	chr9	110742259	12A2p6	cell line	sgMsh2	110742259	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.152	39	0	0	NA	exonic	Pth1r	synonymous SNV	"Pth1r:NM_001083936:exon1:c.C42T:p.L14L,Pth1r:NM_001083935:exon2:c.C42T:p.L14L,Pth1r:NM_011199:exon3:c.C42T:p.L14L"	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.831646564	1	0.09214445	AGA	synonymous	NA	NA	NA	NA
M4_p20	chr9	111040452	12A2p6	cell line	sgMsh2	111040452	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	141	0	0	NA	exonic	Ltf	nonsynonymous SNV	Ltf:NM_008522:exon16:c.C2024T:p.S675L	9qF2	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999666	TCG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	112182815	12A2p6	cell line	sgMsh2	112182815	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	96	0	0	NA	exonic	Arpp21	synonymous SNV	"Arpp21:NM_001177615:exon5:c.C264A:p.L88L,Arpp21:NM_001362008:exon5:c.C264A:p.L88L,Arpp21:NM_001362009:exon5:c.C264A:p.L88L,Arpp21:NM_001362000:exon6:c.C264A:p.L88L,Arpp21:NM_001362001:exon6:c.C264A:p.L88L,Arpp21:NM_001362002:exon6:c.C264A:p.L88L,Arpp21:NM_001362005:exon6:c.C264A:p.L88L,Arpp21:NM_001362006:exon6:c.C264A:p.L88L,Arpp21:NM_001362007:exon6:c.C264A:p.L88L,Arpp21:NM_028755:exon6:c.C264A:p.L88L,Arpp21:NM_001177620:exon7:c.C264A:p.L88L,Arpp21:NM_001362003:exon7:c.C264A:p.L88L,Arpp21:NM_001362004:exon7:c.C264A:p.L88L"	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9995523	AGA	synonymous	NA	NA	NA	NA
M4_p20	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	52	0	0	NA	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9943622	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	109	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9997885	ATC	nonsynonymous	A	5	AAAAA	NA
M4_p20	chr9	115216918	12A2p6	cell line	sgMsh2	115216918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	114	0	0	NA	exonic	Osbpl10	nonsynonymous SNV	Osbpl10:NM_148958:exon8:c.A1621G:p.I541V	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998415	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	259	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	3.79E-08	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9997336	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	119348742	12A2p6	cell line	sgMsh2	119348742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	143	0	0	NA	exonic	Acaa1a	nonsynonymous SNV	"Acaa1a:NM_001357516:exon7:c.C332T:p.A111V,Acaa1a:NM_130864:exon8:c.C788T:p.A263V"	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999702	GCC	nonsynonymous	GCCT	8	GCCTGCCT	NA
M4_p20	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	160	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999888	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M4_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	66	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9974782	CCC	synonymous	NA	NA	NA	NA
M4_p20	chr9	121266311	12A2p6	cell line	sgMsh2	121266311	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	165	0	0	NA	exonic	Ulk4	nonsynonymous SNV	Ulk4:NM_177589:exon4:c.A275C:p.N92T	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999916	GTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	151	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	0.826175205	1	0.9128744	GAT	synonymous	NA	NA	NA	NA
M4_p20	chr9	123048544	12A2p6	cell line	sgMsh2	123048544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	145	0	0	NA	exonic	Tgm4	nonsynonymous SNV	Tgm4:NM_177911:exon6:c.A610G:p.I204V	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9999735	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	120	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9998878	CAC	synonymous	NA	NA	NA	NA
M4_p20	chr9	123180313	12A2p6	cell line	sgMsh2	123180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	120	0	0	NA	exonic	Cdcp1	synonymous SNV	Cdcp1:NM_133974:exon6:c.T1299C:p.P433P	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	2	1	1	0.9998878	CAG	synonymous	NA	NA	NA	NA
M4_p20	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	216	0	0	NA	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-3190600-124127055	5	3	2	0.9	4.924223078	RARE KARYOTYPE	1	1	1	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	21	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M4_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	63	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	119	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	172	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	219	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	21486740	12A2p6	cell line	sgMsh2	21486740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	87	0	0	NA	exonic	Agtr2	synonymous SNV	Agtr2:NM_007429:exon3:c.T612C:p.Y204Y	XqA2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M4_p20	chrX	23235418	12A2p6	cell line	sgMsh2	23235418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	84	0	0	NA	exonic	Klhl13	nonsynonymous SNV	"Klhl13:NM_001290476:exon5:c.T1153C:p.Y385H,Klhl13:NM_001310466:exon5:c.T1129C:p.Y377H,Klhl13:NM_001381894:exon6:c.T1171C:p.Y391H,Klhl13:NM_001381896:exon6:c.T1123C:p.Y375H,Klhl13:NM_001381893:exon7:c.T1171C:p.Y391H,Klhl13:NM_026167:exon7:c.T1123C:p.Y375H,Klhl13:NM_001381891:exon8:c.T1189C:p.Y397H,Klhl13:NM_001381892:exon8:c.T1189C:p.Y397H,Klhl13:NM_001381895:exon8:c.T1123C:p.Y375H"	XqA2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.551	214	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	46329256	12A2p6	cell line	sgMsh2	46329256	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	181	0	0	NA	exonic	Actrt1	synonymous SNV	Actrt1:NM_028514:exon1:c.A147T:p.A49A	XqA4	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M4_p20	chrX	47947707	12A2p6	cell line	sgMsh2	47947707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.454	81	0	0	NA	exonic	Ocrl	frameshift deletion	Ocrl:NM_177215:exon17:c.1711delT:p.F573Lfs*3	XqA5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M4_p20	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	67	0	0	NA	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	57299497	12A2p6	cell line	sgMsh2	57299497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.591	121	0	0	NA	exonic	Arhgef6	stopgain	"Arhgef6:NM_001358573:exon4:c.G162A:p.W54X,Arhgef6:NM_152801:exon5:c.G693A:p.W231X"	XqA6	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	80	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	62290460	12A2p6	cell line	sgMsh2	62290460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	93	0	0	NA	exonic	4933402E13Rik	nonsynonymous SNV	"4933402E13Rik:NM_001199996:exon4:c.G85A:p.V29M,4933402E13Rik:NM_001199997:exon4:c.G85A:p.V29M"	XqA6	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TGT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	66654991	12A2p6	cell line	sgMsh2	66654991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	82	0	0	NA	exonic	Slitrk2	nonsynonymous SNV	"Slitrk2:NM_198863:exon2:c.A1087T:p.R363W,Slitrk2:NM_001161431:exon3:c.A1087T:p.R363W"	XqA7.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	105	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M4_p20	chrX	71667688	12A2p6	cell line	sgMsh2	71667688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.609	71	0	0	NA	exonic	Gpr50	nonsynonymous SNV	Gpr50:NM_010340:exon2:c.A1375G:p.T459A	XqA7.3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	165	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	119	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M4_p20	chrX	79295219	12A2p6	cell line	sgMsh2	79295219	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	58	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon63:c.G9173T:p.R3058M	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	79319120	12A2p6	cell line	sgMsh2	79319120	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	39	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon57:c.G8255A:p.G2752D	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	79351159	12A2p6	cell line	sgMsh2	79351159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	27	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon48:c.A7032G:p.K2344K	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M4_p20	chrX	79509993	12A2p6	cell line	sgMsh2	79509993	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	25	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon6:c.T875G:p.I292S	XqB	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	85149159	12A2p6	cell line	sgMsh2	85149159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	160	0	0	NA	exonic	Dmd	nonsynonymous SNV	"Dmd:NM_001314035:exon10:c.A1049G:p.D350G,Dmd:NM_001314037:exon10:c.A1049G:p.D350G,Dmd:NM_001314034:exon11:c.A1088G:p.D363G,Dmd:NM_001314036:exon11:c.A1088G:p.D363G,Dmd:NM_007868:exon72:c.A10271G:p.D3424G"	XqC1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	80	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.603	93	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M4_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	155	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	96462998	12A2p6	cell line	sgMsh2	96462998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.532	189	0	0	NA	exonic	Heph	nonsynonymous SNV	"Heph:NM_001159627:exon3:c.T74C:p.I25T,Heph:NM_001159628:exon3:c.T74C:p.I25T,Heph:NM_010417:exon3:c.T74C:p.I25T,Heph:NM_181273:exon3:c.T74C:p.I25T"	XqC3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	19	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	78	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.545	81	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M4_p20	chrX	102078639	12A2p6	cell line	sgMsh2	102078639	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	55	0	0	NA	exonic	Nhsl2	nonsynonymous SNV	Nhsl2:NM_001163610:exon6:c.G2047A:p.A683T	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	80	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M4_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	122	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M4_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	54	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	107399652	12A2p6	cell line	sgMsh2	107399652	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	103	0	0	NA	exonic	Itm2a	nonsynonymous SNV	Itm2a:NM_008409:exon2:c.G158A:p.C53Y	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GCA	nonsynonymous	GCAT	8	GCATGCAT	NA
M4_p20	chrX	107685316	12A2p6	cell line	sgMsh2	107685316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	118	0	0	NA	exonic	Tbx22	synonymous SNV	"Tbx22:NM_001290747:exon6:c.C804T:p.G268G,Tbx22:NM_145224:exon9:c.C1410T:p.G470G,Tbx22:NM_181319:exon9:c.C1452T:p.G484G"	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M4_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	145	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	108798824	12A2p6	cell line	sgMsh2	108798824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	237	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon9:c.A845G:p.Y282C	XqD	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	83	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	67	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M4_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	80	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	59	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	126	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	134720720	12A2p6	cell line	sgMsh2	134720720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.641	50	0	0	NA	exonic	Armcx1	synonymous SNV	"Armcx1:NM_001166378:exon4:c.A570G:p.V190V,Armcx1:NM_001166379:exon4:c.A570G:p.V190V,Armcx1:NM_001166380:exon5:c.A570G:p.V190V,Armcx1:NM_001166377:exon6:c.A570G:p.V190V,Armcx1:NM_030066:exon6:c.A570G:p.V190V"	XqE3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M4_p20	chrX	136772728	12A2p6	cell line	sgMsh2	136772728	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	104	0	0	NA	exonic	Glra4	nonsynonymous SNV	Glra4:NM_010297:exon6:c.A710C:p.N237T	XqF1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.545	63	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M4_p20	chrX	144474159	12A2p6	cell line	sgMsh2	144474159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	76	0	0	NA	exonic	Trpc5os	nonsynonymous SNV	Trpc5os:NM_001195579:exon4:c.T275C:p.I92T	XqF2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	GATA	8	GATAGATA	NA
M4_p20	chrX	148703240	12A2p6	cell line	sgMsh2	148703240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	111	0	0	NA	exonic	Gm15127	synonymous SNV	Gm15127:NM_001114400:exon7:c.A1341G:p.T447T	XqF2	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M4_p20	chrX	149616692	12A2p6	cell line	sgMsh2	149616692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	217	0	0	NA	exonic	Gm10439	nonsynonymous SNV	Gm10439:NM_001037716:exon4:c.T556C:p.Y186H	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	16	0	0	NA	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M4_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	97	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	152272960	12A2p6	cell line	sgMsh2	152272960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	38	0	0	NA	exonic	Kdm5c	nonsynonymous SNV	Kdm5c:NM_013668:exon26:c.G4542T:p.Q1514H	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	154575995	12A2p6	cell line	sgMsh2	154575995	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.572	77	0	0	NA	exonic	Samt2	synonymous SNV	Samt2:NM_001037167:exon3:c.A55C:p.R19R	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M4_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	195	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	157871694	12A2p6	cell line	sgMsh2	157871694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	129	0	0	NA	exonic	Cnksr2	nonsynonymous SNV	"Cnksr2:NM_001310719:exon14:c.A1634G:p.Y545C,Cnksr2:NM_001374835:exon15:c.A1781G:p.Y594C,Cnksr2:NM_177751:exon15:c.A1781G:p.Y594C"	XqF4	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M4_p20	chrX	163549211	12A2p6	cell line	sgMsh2	163549211	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.597	118	0	0	NA	exonic	Grpr	synonymous SNV	Grpr:NM_008177:exon1:c.C87A:p.P29P	XqF4	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGG	synonymous	G	5	GGGGG	NA
M4_p20	chrX	164535496	12A2p6	cell line	sgMsh2	164535496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.609	108	0	0	NA	exonic	Asb9	nonsynonymous SNV	Asb9:NM_027027:exon7:c.G683A:p.G228D	XqF5	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M4_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	118	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.924223078	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	55	169	31	0.183431953	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	TGG	synonymous	NA	NA	NA	NA
M5	chr1	6230003	12A2p6	cell line	sgMsh2	6230003	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	113	46	12	0.260869565	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon3:c.A1G:p.M1V	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	CAT	nonsynonymous	ATC	8	ATCATCAT	NA
M5	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	51	92	25	0.27173913	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.991479	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	47	70	11	0.157142857	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9890716	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr1	9546354	12A2p6	cell line	sgMsh2	9546354	C	T	SNV	Mutect2;Vardict	2	0.075	121	147	0	0	exonic	Rrs1	synonymous SNV	Rrs1:NM_021511:exon1:c.C831T:p.S277S	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.318007603	3	0.9966005	GCA	synonymous	NA	NA	NA	NA
M5	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	146	15	2	0.133333333	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	10172927	12A2p6	cell line	sgMsh2	10172927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	83	145	21	0.144827586	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon21:c.C3187T:p.P1063S	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	230	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9999998	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M5	chr1	12848191	12A2p6	cell line	sgMsh2	12848191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	202	0	0	NA	exonic	Sulf1	nonsynonymous SNV	"Sulf1:NM_001198566:exon18:c.C2378T:p.A793V,Sulf1:NM_001198565:exon19:c.C2378T:p.A793V,Sulf1:NM_172294:exon19:c.C2378T:p.A793V"	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9993346	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	18251323	12A2p6	cell line	sgMsh2	18251323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	75	0	0	NA	exonic	Defb41	synonymous SNV	Defb41:NM_183124:exon2:c.T66C:p.H22H	1qA3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9977188	TAT	synonymous	NA	NA	NA	NA
M5	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	32	1	1	1	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	20559431	12A2p6	cell line	sgMsh2	20559431	G	-	Deletion	Mutect2;Vardict	2	0.235	44	1	0	0	exonic	Pkhd1	frameshift deletion	Pkhd1:NM_153179:exon20:c.1948delC:p.H650Tfs*60	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	NA	NA	TGG	frameshift	NA	NA	NA	-1
M5	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	74	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9979776	TGC	synonymous	NA	NA	NA	NA
M5	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	104	61	11	0.180327869	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	25226773	12A2p6	cell line	sgMsh2	25226773	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	84	0	0	NA	exonic	Adgrb3	synonymous SNV	Adgrb3:NM_175642:exon18:c.C2658T:p.G886G	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	GGC	synonymous	NA	NA	NA	NA
M5	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	112	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9993072	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr1	26687421	12A2p6	cell line	sgMsh2	26687421	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	327	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G6T:p.E2D	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.182324359	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	28778145	12A2p6	cell line	sgMsh2	28778145	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.262	198	0	0	NA	exonic	Gm597	frameshift insertion	Gm597:NM_001013750:exon2:c.804dupA:p.C269Mfs*5	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5	chr1	28778570	12A2p6	cell line	sgMsh2	28778570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	109	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A380G:p.K127R	1qA5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997752	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9669045	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	27	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9626395	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	33484699	12A2p6	cell line	sgMsh2	33484699	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	86	20	0.23255814	exonic	Prim2	nonsynonymous SNV	Prim2:NM_008922:exon11:c.G1130A:p.G377D	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.999998	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	198	47	0	0	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	36192425	12A2p6	cell line	sgMsh2	36192425	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	182	165	35	0.212121212	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon14:c.T1458G:p.P486P	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999753	CAG	synonymous	NA	NA	NA	NA
M5	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	130	130	29	0.223076923	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9897568	TAG	synonymous	NA	NA	NA	NA
M5	chr1	36269512	12A2p6	cell line	sgMsh2	36269512	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	41	11	0.268292683	exonic	Neurl3	nonsynonymous SNV	Neurl3:NM_153408:exon2:c.G218A:p.C73Y	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9770586	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	41	9	2	0.222222222	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9815451	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	60	3	0	0	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.972955	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr1	38535658	12A2p6	cell line	sgMsh2	38535658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	30	0	0	NA	exonic	Aff3	synonymous SNV	Aff3:NM_001290814:exon3:c.A240G:p.K80K	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9688568	CTT	synonymous	NA	NA	NA	NA
M5	chr1	39402906	12A2p6	cell line	sgMsh2	39402906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	160	0	0	NA	exonic	Tbc1d8	nonsynonymous SNV	"Tbc1d8:NM_001357521:exon5:c.T649C:p.W217R,Tbc1d8:NM_001357522:exon5:c.T604C:p.W202R,Tbc1d8:NM_018775:exon5:c.T604C:p.W202R"	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9998871	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	40537067	12A2p6	cell line	sgMsh2	40537067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	127	6	0	0	exonic	Il18rap	nonsynonymous SNV	Il18rap:NM_010553:exon8:c.T737C:p.I246T	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9998057	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr1	40767820	12A2p6	cell line	sgMsh2	40767820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	63	2	0	0	exonic	Slc9a2	nonsynonymous SNV	Slc9a2:NM_001033289:exon12:c.G2266A:p.G756R	1qB	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	CGG	nonsynonymous	G	5	GGGGG	NA
M5	chr1	44766105	12A2p6	cell line	sgMsh2	44766105	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	177	0	0	NA	exonic	Gulp1	nonsynonymous SNV	Gulp1:NM_028450:exon6:c.C353T:p.S118F	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999969	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	98	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	171	141	41	0.290780142	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999729	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	46099446	12A2p6	cell line	sgMsh2	46099446	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	249	3	1	0.333333333	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon7:c.T515G:p.L172R	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	3.51E-08	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	22	45	2	0.044444444	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9356394	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	147	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	212	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	202	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.992183722	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	107	857	202	0.235705951	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9991058	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	102	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.64873551	2	0.9627774	CAG	synonymous	NA	NA	NA	NA
M5	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	33	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9731177	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M5	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	80	14	3	0.214285714	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	ATG	synonymous	NA	NA	NA	NA
M5	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	85	414	110	0.265700483	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.98682	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	58829002	12A2p6	cell line	sgMsh2	58829002	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	148	339	72	0.212389381	exonic	Casp8	nonsynonymous SNV	"Casp8:NM_001080126:exon4:c.T541G:p.S181A,Casp8:NM_009812:exon4:c.T541G:p.S181A,Casp8:NM_001277926:exon5:c.T601G:p.S201A"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9995644	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr1	59199042	12A2p6	cell line	sgMsh2	59199042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	92	42	9	0.214285714	exonic	Als2	nonsynonymous SNV	"Als2:NM_001159948:exon10:c.A2130G:p.I710M,Als2:NM_028717:exon10:c.A2130G:p.I710M,Als2:NM_146109:exon10:c.A2130G:p.I710M"	1qC1.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	59556301	12A2p6	cell line	sgMsh2	59556301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	60	0	0	NA	exonic	Gm973	nonsynonymous SNV	"Gm973:NM_001357842:exon6:c.C941T:p.P314L,Gm973:NM_001013771:exon8:c.C1250T:p.P417L"	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7378821	CCA	nonsynonymous	AAAAG	10	AAAAGAAAAG	NA
M5	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	117	102	23	0.225490196	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	111	27	4	0.148148148	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998017	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	127	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	2	0.09621858	CTG	nonsynonymous	G	5	GGGGG	NA
M5	chr1	67160957	12A2p6	cell line	sgMsh2	67160957	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	107	0	0	NA	exonic	Cps1	nonsynonymous SNV	Cps1:NM_001080809:exon12:c.G1263T:p.E421D	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	67177025	12A2p6	cell line	sgMsh2	67177025	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	82	0	0	NA	exonic	Cps1	synonymous SNV	Cps1:NM_001080809:exon20:c.C2508T:p.N836N	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9976898	ACC	synonymous	NA	NA	NA	NA
M5	chr1	71317232	12A2p6	cell line	sgMsh2	71317232	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	110	0	0	NA	exonic	Abca12	synonymous SNV	Abca12:NM_175210:exon15:c.C1815T:p.N605N	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9994269	CGT	synonymous	NA	NA	NA	NA
M5	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	80	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9974216	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	113	26	9	0.346153846	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	121	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9984209	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	144	75	10	0.133333333	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.997132	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	172	15	1	0.066666667	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9994998	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	47	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9890716	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	74921451	12A2p6	cell line	sgMsh2	74921451	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	52	0	0	NA	exonic	Cfap65	nonsynonymous SNV	Cfap65:NM_001039495:exon13:c.T2359G:p.F787V	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	85	440	84	0.190909091	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9975463	TAG	synonymous	NA	NA	NA	NA
M5	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	44	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9868351	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	84738700	12A2p6	cell line	sgMsh2	84738700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	117	268	73	0.27238806	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon32:c.C4847T:p.A1616V	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.999753	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	139	145	4	0.027586207	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.009998028	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	98	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.758978146	1	0.5785331	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Strelka2;Vardict	2	0.0903	155	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.382881154	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	77	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.750497943	1	0.5932252	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	87049738	12A2p6	cell line	sgMsh2	87049738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	39	23	4	0.173913043	exonic	Dis3l2	nonsynonymous SNV	"Dis3l2:NM_153530:exon21:c.A2606G:p.E869G,Dis3l2:NM_001172157:exon22:c.A2648G:p.E883G"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9820644	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	82	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	87379988	12A2p6	cell line	sgMsh2	87379988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	236	44	10	0.227272727	exonic	Gigyf2	nonsynonymous SNV	"Gigyf2:NM_001110212:exon8:c.A515G:p.K172R,Gigyf2:NM_146112:exon8:c.A515G:p.K172R"	1qC5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999998	AAA	nonsynonymous	A	5	AAAAA	NA
M5	chr1	88232287	12A2p6	cell line	sgMsh2	88232287	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	470	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon6:c.A600T:p.I200I	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.224725373	3	1	TAT	synonymous	NA	NA	NA	NA
M5	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	255	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.250165981	3	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	88255241	12A2p6	cell line	sgMsh2	88255241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	165	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3809C:p.L1270P	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.241685778	3	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	88277397	12A2p6	cell line	sgMsh2	88277397	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	121	122	6	0.049180328	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon1:c.T73G:p.L25V,Hjurp:NM_198652:exon1:c.T73G:p.L25V"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.33920811	3	0.9856292	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	32	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M5	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	82	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	171	122	0	0	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999954	AAG	synonymous	NA	NA	NA	NA
M5	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	7	5	0.714285714	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996285	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	93408448	12A2p6	cell line	sgMsh2	93408448	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	123	491	97	0.197556008	exonic	Hdlbp	frameshift deletion	"Hdlbp:NM_001301364:exon27:c.3641delC:p.P1214Qfs*30,Hdlbp:NM_001357556:exon27:c.3641delC:p.P1214Qfs*30,Hdlbp:NM_133808:exon27:c.3641delC:p.P1214Qfs*30"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	133	26	4	0.153846154	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9976534	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	93689190	12A2p6	cell line	sgMsh2	93689190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	47	72	11	0.152777778	exonic	Bok	nonsynonymous SNV	Bok:NM_016778:exon3:c.A257G:p.Y86C	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9877563	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	61	108	22	0.203703704	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9954353	TAG	synonymous	NA	NA	NA	NA
M5	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Strelka2;Vardict	2	0.127	63	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.538492875	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr1	107379917	12A2p6	cell line	sgMsh2	107379917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	175	0	0	NA	exonic	Serpinb11	synonymous SNV	Serpinb11:NM_025867:exon8:c.A1077G:p.T359T	1qE2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999964	CAG	synonymous	CAGTT	12	CAGTTCAGTTCA	NA
M5	chr1	111862558	12A2p6	cell line	sgMsh2	111862558	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	232	0	0	NA	exonic	Dsel	frameshift deletion	Dsel:NM_001081316:exon2:c.246delT:p.F82Lfs*7	1qE2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.263	193	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5	chr1	116188300	12A2p6	cell line	sgMsh2	116188300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	238	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon10:c.A1511C:p.N504T,Cntnap5a:NM_001371013:exon10:c.A1514C:p.N505T"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	116412208	12A2p6	cell line	sgMsh2	116412208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	103	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon14:c.A2196G:p.R732R,Cntnap5a:NM_001371013:exon14:c.A2199G:p.R733R"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996723	GAC	synonymous	NA	NA	NA	NA
M5	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	51	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9865272	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	149	31	6	0.193548387	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.602094395	2	0.9995205	GTT	synonymous	NA	NA	NA	NA
M5	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	111	52	19	0.365384615	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998017	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.232	183	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999945	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	116	65	12	0.184615385	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998552	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	104	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	97	254	55	0.216535433	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	129678174	12A2p6	cell line	sgMsh2	129678174	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	88	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon7:c.A1651C:p.I551L	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	188	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999984	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	196	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.999999	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	131758835	12A2p6	cell line	sgMsh2	131758835	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	3	0	0	exonic	Slc26a9	nonsynonymous SNV	Slc26a9:NM_177243:exon11:c.A1292C:p.K431T	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9859936	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	131759481	12A2p6	cell line	sgMsh2	131759481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	152	0	0	NA	exonic	Slc26a9	synonymous SNV	Slc26a9:NM_177243:exon12:c.T1377C:p.S459S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.6996775	GTA	synonymous	NA	NA	NA	NA
M5	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	64	6	1	0.166666667	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9947635	GTA	synonymous	NA	NA	NA	NA
M5	chr1	131981619	12A2p6	cell line	sgMsh2	131981619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	41	3	0	0	exonic	Slc45a3	nonsynonymous SNV	"Slc45a3:NM_001177628:exon5:c.A1553G:p.H518R,Slc45a3:NM_145977:exon5:c.A1553G:p.H518R"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9841483	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	64	50	6	0.12	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M5	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	106	34	11	0.323529412	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.792898957	1	0.7926759	GGC	synonymous	NA	NA	NA	NA
M5	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	136	90	23	0.255555556	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999588	CTG	synonymous	NA	NA	NA	NA
M5	chr1	133067152	12A2p6	cell line	sgMsh2	133067152	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	105	20	8	0.4	exonic	Pik3c2b	nonsynonymous SNV	Pik3c2b:NM_001099276:exon2:c.C853A:p.P285T	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9995064	CCC	nonsynonymous	C	5	CCCCC	NA
M5	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	110	239	48	0.20083682	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9967056	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	62	59	19	0.322033898	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9651556	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr1	133320995	12A2p6	cell line	sgMsh2	133320995	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	69	8	0	0	exonic	Golt1a	frameshift deletion	Golt1a:NM_026680:exon4:c.301delT:p.F102Sfs*16	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.915861897	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr1	133376953	12A2p6	cell line	sgMsh2	133376953	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	8	2	0.25	exonic	Etnk2	nonsynonymous SNV	Etnk2:NM_175443:exon6:c.G913A:p.V305M	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr1	133386824	12A2p6	cell line	sgMsh2	133386824	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	41	34	4	0.117647059	exonic	Sox13	frameshift deletion	Sox13:NM_011439:exon9:c.942delC:p.A315Pfs*82	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CGG	frameshift	TGGC	8	TGGCTGGC	-1
M5	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	18	23	5	0.217391304	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9360476	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr1	133645798	12A2p6	cell line	sgMsh2	133645798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	137	325	62	0.190769231	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon4:c.A103G:p.T35A,Zc3h11a:NM_144530:exon4:c.A103G:p.T35A,Zc3h11a:NM_001276767:exon5:c.A103G:p.T35A"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9912797	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	133659294	12A2p6	cell line	sgMsh2	133659294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	142	106	33	0.311320755	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T304C:p.L102L	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999295	AAC	synonymous	NA	NA	NA	NA
M5	chr1	133903704	12A2p6	cell line	sgMsh2	133903704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	163	1	0	0	exonic	Optc	nonsynonymous SNV	"Optc:NM_001160421:exon3:c.C463A:p.L155I,Optc:NM_001160422:exon3:c.C463A:p.L155I,Optc:NM_054076:exon3:c.C463A:p.L155I,Optc:NM_001160420:exon4:c.C463A:p.L155I"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999924	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	134588851	12A2p6	cell line	sgMsh2	134588851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	158	83	23	0.277108434	exonic	Kdm5b	synonymous SNV	Kdm5b:NM_152895:exon4:c.T480C:p.G160G	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999896	GTT	synonymous	NA	NA	NA	NA
M5	chr1	135137352	12A2p6	cell line	sgMsh2	135137352	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	69	0	0	NA	exonic	Ptpn7	nonsynonymous SNV	"Ptpn7:NM_001356382:exon6:c.T497G:p.I166S,Ptpn7:NM_177081:exon6:c.T497G:p.I166S"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.219	150	27	6	0.222222222	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9995111	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.219	150	26	6	0.230769231	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9995111	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	135472218	12A2p6	cell line	sgMsh2	135472218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	62	28	7	0.25	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon5:c.C1613A:p.P538H	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	135845588	12A2p6	cell line	sgMsh2	135845588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	69	34	14	0.411764706	exonic	Tnnt2	nonsynonymous SNV	"Tnnt2:NM_001130180:exon4:c.G83A:p.G28D,Tnnt2:NM_001130181:exon4:c.G167A:p.G56D,Tnnt2:NM_011619:exon4:c.G83A:p.G28D,Tnnt2:NM_001130178:exon5:c.G95A:p.G32D,Tnnt2:NM_001130179:exon5:c.G179A:p.G60D"	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr1	136527421	12A2p6	cell line	sgMsh2	136527421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	90	15	4	0.266666667	exonic	Kif14	synonymous SNV	Kif14:NM_001287179:exon29:c.T4830C:p.C1610C	1qE4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	GTT	synonymous	NA	NA	NA	NA
M5	chr1	139516384	12A2p6	cell line	sgMsh2	139516384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	180	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon9:c.T1455C:p.F485F	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999974	TTG	synonymous	NA	NA	NA	NA
M5	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	211	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	173	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8410862	TAT	synonymous	NA	NA	NA	NA
M5	chr1	140570462	12A2p6	cell line	sgMsh2	140570462	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon23:c.G2676A:p.M892I	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.703856828	2	8.46E-08	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr1	144004030	12A2p6	cell line	sgMsh2	144004030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	105	0	0	NA	exonic	Rgs2	nonsynonymous SNV	Rgs2:NM_009061:exon1:c.G89A:p.R30Q	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9954309	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr1	144753924	12A2p6	cell line	sgMsh2	144753924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	112	0	0	NA	exonic	Rgs18	nonsynonymous SNV	Rgs18:NM_022881:exon5:c.T596C:p.L199S	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998138	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	114	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9996026	TTT	synonymous	NA	NA	NA	NA
M5	chr1	146701777	12A2p6	cell line	sgMsh2	146701777	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	69	0	0	NA	exonic	Brinp3	synonymous SNV	"Brinp3:NM_001145807:exon4:c.C549A:p.S183S,Brinp3:NM_153539:exon4:c.C549A:p.S183S,Brinp3:NM_001357571:exon5:c.C549A:p.S183S"	1qF	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.8770167	CCT	synonymous	NA	NA	NA	NA
M5	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	69	150	8	0.053333333	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.695376626	2	0.6661554	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr1	150664892	12A2p6	cell line	sgMsh2	150664892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	188	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon56:c.A8665G:p.T2889A	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	150743840	12A2p6	cell line	sgMsh2	150743840	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	72	0	0	NA	exonic	Hmcn1	synonymous SNV	Hmcn1:NM_001024720:exon24:c.G3522A:p.Q1174Q	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9875188	GCT	synonymous	NA	NA	NA	NA
M5	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	95	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	152	231	44	0.19047619	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999849	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	62	17	0.274193548	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999937	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	27	261	68	0.260536398	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.8770428	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	170	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8924052	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	84	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	176	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9998648	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	22	57	13	0.228070175	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9495467	AAG	synonymous	NA	NA	NA	NA
M5	chr1	162545885	12A2p6	cell line	sgMsh2	162545885	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	61	7	4	0.571428571	exonic	Eef1aknmt	nonsynonymous SNV	Eef1aknmt:NM_144877:exon2:c.G796A:p.G266R	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.8805577	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	198	49	11	0.224489796	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999889	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	17	3	0.176470588	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9998402	CCA	synonymous	NA	NA	NA	NA
M5	chr1	164286387	12A2p6	cell line	sgMsh2	164286387	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	86	31	6	0.193548387	exonic	Ccdc181	synonymous SNV	Ccdc181:NM_029115:exon5:c.C1359A:p.A453A	1qH2.2	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9986825	CCT	synonymous	NA	NA	NA	NA
M5	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9996385	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	60	22	4	0.181818182	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.619054801	2	0.8618118	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	106	3	0	0	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997286	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	65	212	33	0.155660377	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.7621186	CTG	synonymous	NA	NA	NA	NA
M5	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	58	276	53	0.192028986	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	108	207	49	0.236714976	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	ATA	synonymous	NA	NA	NA	NA
M5	chr1	171282585	12A2p6	cell line	sgMsh2	171282585	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	86	42	14	0.333333333	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon12:c.C1522A:p.L508I	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.09161351	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	162	59	14	0.237288136	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999772	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	67	80	10	0.125	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.758978146	1	0.6699201	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	55	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.580893888	2	0.099127	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	172599080	12A2p6	cell line	sgMsh2	172599080	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	128	0	0	NA	exonic	Fcrl6	frameshift deletion	Fcrl6:NM_001164725:exon3:c.298delA:p.S100Vfs*27	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	292	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	3.29E-09	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.28	279	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	184	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.424010138	2	0.7196764	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	257	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.995818	ATG	synonymous	NA	NA	NA	NA
M5	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	244	38	0	0	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.394329428	3	0.9774091	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr1	174231386	12A2p6	cell line	sgMsh2	174231386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	92	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon42:c.A5886G:p.L1962L	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	TAC	synonymous	NA	NA	NA	NA
M5	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	92	217	43	0.198156682	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr1	176868233	12A2p6	cell line	sgMsh2	176868233	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	16	2	0.125	exonic	Sdccag8	nonsynonymous SNV	"Sdccag8:NM_001357390:exon10:c.C1102A:p.L368M,Sdccag8:NM_029756:exon10:c.C1102A:p.L368M"	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	76	28	5	0.178571429	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9982159	ATA	synonymous	NA	NA	NA	NA
M5	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	83	129	28	0.217054264	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.636015206	2	0.9363158	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	95	151	31	0.205298013	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	1	0.9994585	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	66	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.746257842	1	0.6124665	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.351	84	69	4	0.057971014	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M5	chr1	181819941	12A2p6	cell line	sgMsh2	181819941	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	96	129	4	0.031007752	exonic	Lbr	stopgain	Lbr:NM_133815:exon10:c.C1270T:p.R424X	1qH5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994914	CGC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M5	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	48	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	CCT	synonymous	NA	NA	NA	NA
M5	chr1	186968272	12A2p6	cell line	sgMsh2	186968272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	124	0	0	NA	exonic	D1Pas1	nonsynonymous SNV	D1Pas1:NM_033077:exon1:c.G397A:p.D133N	1qH5	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9986011	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr1	188436966	12A2p6	cell line	sgMsh2	188436966	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon15:c.G3303A:p.P1101P	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.999976	CGT	synonymous	NA	NA	NA	NA
M5	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	131	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9881115	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	119	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9948468	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr1	195082677	12A2p6	cell line	sgMsh2	195082677	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	48	0	0	NA	exonic	Cd46	nonsynonymous SNV	Cd46:NM_010778:exon5:c.C611T:p.P204L	1qH6	chr1-3216742-195166209	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9177771	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	76	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	45	92	21	0.22826087	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9876267	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	39	6	0.153846154	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	5222390	12A2p6	cell line	sgMsh2	5222390	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	138	11	1	0.090909091	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon78:c.A15071T:p.E5024V,Syne1:NM_001347732:exon78:c.A15050T:p.E5017V"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	165	8	2	0.25	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9984656	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	6830410	12A2p6	cell line	sgMsh2	6830410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	118	0	0	NA	exonic	Oprm1	synonymous SNV	"Oprm1:NM_001039652:exon3:c.A1071G:p.T357T,Oprm1:NM_001302793:exon3:c.A1071G:p.T357T,Oprm1:NM_001302794:exon3:c.A867G:p.T289T,Oprm1:NM_001302795:exon3:c.A867G:p.T289T,Oprm1:NM_001302796:exon3:c.A867G:p.T289T,Oprm1:NM_001304937:exon3:c.A1071G:p.T357T,Oprm1:NM_001304938:exon3:c.A1071G:p.T357T,Oprm1:NM_001304948:exon3:c.A1071G:p.T357T,Oprm1:NM_001304950:exon3:c.A1071G:p.T357T,Oprm1:NM_001304955:exon3:c.A1071G:p.T357T"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	CAA	synonymous	NA	NA	NA	NA
M5	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	182	44	10	0.227272727	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.686896423	2	0.9922221	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	167	31	11	0.35483871	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999941	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	180	52	13	0.25	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999974	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	96	10	0	0	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9895011	CGC	synonymous	NA	NA	NA	NA
M5	chr10	13253706	12A2p6	cell line	sgMsh2	13253706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	67	8	1	0.125	exonic	Phactr2	synonymous SNV	"Phactr2:NM_001033257:exon5:c.C628T:p.L210L,Phactr2:NM_001359294:exon5:c.C481T:p.L161L,Phactr2:NM_001195065:exon6:c.C817T:p.L273L,Phactr2:NM_001195066:exon6:c.C607T:p.L203L,Phactr2:NM_001195096:exon6:c.C640T:p.L214L"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	AGT	synonymous	NA	NA	NA	NA
M5	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	124	18	4	0.222222222	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999124	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr10	14130210	12A2p6	cell line	sgMsh2	14130210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	80	31	6	0.193548387	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A2551G:p.S851G,Hivep2:NM_001358782:exon5:c.A2551G:p.S851G,Hivep2:NM_001358783:exon8:c.A2551G:p.S851G"	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.737777639	1	0.5032565	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	80	19	5	0.263157895	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	9.42E-08	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	75	31	9	0.290322581	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9566873	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	172	21	4	0.19047619	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9903667	CAC	synonymous	NA	NA	NA	NA
M5	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	53	18	5	0.277777778	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9924774	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	65	1	1	1	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9964459	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr10	20339787	12A2p6	cell line	sgMsh2	20339787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	76	326	66	0.202453988	exonic	Bclaf1	nonsynonymous SNV	"Bclaf1:NM_001025393:exon11:c.C2473T:p.R825C,Bclaf1:NM_001025392:exon12:c.C2620T:p.R874C,Bclaf1:NM_153787:exon12:c.C2614T:p.R872C"	10qA3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9982159	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	864	237	0.274305556	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr10	24244309	12A2p6	cell line	sgMsh2	24244309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	188	2	0	0	exonic	Moxd1	nonsynonymous SNV	Moxd1:NM_021509:exon2:c.A334G:p.M112V	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999889	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	352	86	0.244318182	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9778228	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	105	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9995064	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	90	42	1	0.023809524	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.975223316	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr10	33195991	12A2p6	cell line	sgMsh2	33195991	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	49	0	0	NA	exonic	Trdn	nonsynonymous SNV	"Trdn:NM_001364696:exon8:c.C653A:p.A218D,Trdn:NM_001364697:exon8:c.C653A:p.A218D,Trdn:NM_029726:exon8:c.C653A:p.A218D"	10qA4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9840313	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	34605853	12A2p6	cell line	sgMsh2	34605853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	131	141	30	0.212765957	exonic	Frk	nonsynonymous SNV	"Frk:NM_001159544:exon6:c.T1138G:p.F380V,Frk:NM_001358769:exon7:c.T1138G:p.F380V,Frk:NM_010237:exon7:c.T1138G:p.F380V"	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	156	29	10	0.344827586	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9872118	CCT	synonymous	NA	NA	NA	NA
M5	chr10	39828177	12A2p6	cell line	sgMsh2	39828177	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	157	19	0	0	exonic	Rev3l	nonsynonymous SNV	Rev3l:NM_011264:exon14:c.C6218A:p.A2073D	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.199284765	3	8.11E-09	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	40466671	12A2p6	cell line	sgMsh2	40466671	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	203	136	31	0.227941176	exonic	Cdk19	nonsynonymous SNV	"Cdk19:NM_001291816:exon5:c.C188A:p.P63H,Cdk19:NM_001291817:exon5:c.C29A:p.P10H,Cdk19:NM_001168304:exon6:c.C548A:p.P183H"	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9998318	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr10	41256492	12A2p6	cell line	sgMsh2	41256492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	139	37	11	0.297297297	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon12:c.C1317A:p.S439R	10qB1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	93	44	12	0.272727273	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	35	1	0	0	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9770586	GTT	synonymous	NA	NA	NA	NA
M5	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	58	27	3	0.111111111	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	51	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	129	89	10	0.112359551	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9983912	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr10	52027972	12A2p6	cell line	sgMsh2	52027972	C	T	SNV	Mutect2;Vardict	2	0.333	8	0	0	NA	exonic	Vgll2	synonymous SNV	"Vgll2:NM_001300957:exon3:c.C927T:p.L309L,Vgll2:NM_153786:exon3:c.C930T:p.L310L"	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.8860264	TCC	synonymous	NA	NA	NA	NA
M5	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	71	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9331381	TAC	synonymous	NA	NA	NA	NA
M5	chr10	53073510	12A2p6	cell line	sgMsh2	53073510	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	55	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon5:c.A694C:p.I232L	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.916207	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	56123586	12A2p6	cell line	sgMsh2	56123586	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	84	15	8	0.533333333	exonic	Tbc1d32	nonsynonymous SNV	Tbc1d32:NM_001033385:exon22:c.G2489T:p.R830M	10qB3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	57527716	12A2p6	cell line	sgMsh2	57527716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	71	414	111	0.268115942	exonic	Serinc1	synonymous SNV	Serinc1:NM_019760:exon2:c.A150G:p.V50V	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8678621	ATA	synonymous	NA	NA	NA	NA
M5	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	246	130	35	0.269230769	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	44	45	8	0.177777778	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	CAC	synonymous	NA	NA	NA	NA
M5	chr10	59339297	12A2p6	cell line	sgMsh2	59339297	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	93	134	25	0.186567164	exonic	P4ha1	synonymous SNV	"P4ha1:NM_001316370:exon3:c.T78A:p.G26G,P4ha1:NM_001316371:exon3:c.T78A:p.G26G,P4ha1:NM_011030:exon3:c.T78A:p.G26G"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	GTC	synonymous	NA	NA	NA	NA
M5	chr10	61180424	12A2p6	cell line	sgMsh2	61180424	A	-	Deletion	Strelka2;Vardict	2	0.2326	43	0	0	NA	exonic	Tbata	frameshift deletion	"Tbata:NM_001017407:exon4:c.576delA:p.R195delinsGLLKSPQCSAAGTGGEG,Tbata:NM_023064:exon4:c.678delA:p.R229delinsGLLKSPQCSAAGTGGEG,Tbata:NM_001017441:exon5:c.561delA:p.R190delinsGLLKSPQCSAAGTGGEG"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.98624758	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	128	19	3	0.157894737	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9972221	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr10	62393777	12A2p6	cell line	sgMsh2	62393777	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	104	2	0	0	exonic	Hkdc1	frameshift deletion	Hkdc1:NM_145419:exon15:c.2120delG:p.G707Afs*24	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	89	71	19	0.267605634	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr10	62751842	12A2p6	cell line	sgMsh2	62751842	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	103	87	0	0	exonic	Ccar1	frameshift deletion	Ccar1:NM_026201:exon19:c.2542delA:p.R848Efs*39	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.703856828	NA	NA	CTT	frameshift	TCTTT	11	TCTTTTCTTTT	-1
M5	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	180	39	12	0.307692308	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999974	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	104	83	12	0.144578313	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9993997	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr10	68096898	12A2p6	cell line	sgMsh2	68096898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	62	53	8	0.150943396	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A3173G:p.Y1058C	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.5129565	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	117	66	20	0.303030303	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.351928414	3	0.9590115	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	165	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999933	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	75158051	12A2p6	cell line	sgMsh2	75158051	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	138	102	24	0.235294118	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon12:c.G2565T:p.E855D	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9994491	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr10	75640498	12A2p6	cell line	sgMsh2	75640498	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	38	0	0	NA	exonic	Susd2	frameshift deletion	"Susd2:NM_001162913:exon4:c.573delC:p.C192Afs*61,Susd2:NM_027890:exon6:c.933delC:p.C312Afs*61"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M5	chr10	75715643	12A2p6	cell line	sgMsh2	75715643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	44	45	14	0.311111111	exonic	Cabin1	synonymous SNV	Cabin1:NM_172549:exon25:c.T3894C:p.P1298P	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	AAG	synonymous	NA	NA	NA	NA
M5	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	94	210	59	0.280952381	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.767458349	1	0.6494657	AAG	synonymous	NA	NA	NA	NA
M5	chr10	75948382	12A2p6	cell line	sgMsh2	75948382	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Vpreb3	nonsynonymous SNV	"Vpreb3:NM_001358532:exon1:c.C25A:p.L9M,Vpreb3:NM_009514:exon1:c.C25A:p.L9M"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	TCT	nonsynonymous	TGCC	9	TGCCTGCCT	NA
M5	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	17	45	8	0.177777778	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9321778	CTA	synonymous	NA	NA	NA	NA
M5	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	120	90	23	0.255555556	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998873	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	31	1	1	1	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	9.91E-08	CAC	synonymous	NA	NA	NA	NA
M5	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	58	1	0	0	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	CTG	synonymous	NA	NA	NA	NA
M5	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	203	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9988922	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	141	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999699	AAG	synonymous	NA	NA	NA	NA
M5	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	149	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	78970145	12A2p6	cell line	sgMsh2	78970145	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	154	0	0	NA	exonic	Olfr1353	nonsynonymous SNV	Olfr1353:NM_147042:exon3:c.G495T:p.E165D	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999867	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr10	79194030	12A2p6	cell line	sgMsh2	79194030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	234	0	0	NA	exonic	Vmn2r80	synonymous SNV	Vmn2r80:NM_001103368:exon6:c.C1689T:p.H563H	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	ACT	synonymous	NA	NA	NA	NA
M5	chr10	79746551	12A2p6	cell line	sgMsh2	79746551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	23	6	0	0	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon1:c.T2C:p.M1T	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9524732	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	79866723	12A2p6	cell line	sgMsh2	79866723	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	119	0	0	NA	exonic	Plppr3	nonsynonymous SNV	"Plppr3:NM_001170935:exon5:c.A596C:p.K199T,Plppr3:NM_181681:exon5:c.A596C:p.K199T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9845956	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	42	92	24	0.260869565	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9850991	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	40	25	2	0.08	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.983138	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	109	47	14	0.29787234	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.657215713	2	9.93E-08	GAC	synonymous	NA	NA	NA	NA
M5	chr10	80284460	12A2p6	cell line	sgMsh2	80284460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	11	160	39	0.24375	exonic	Dazap1	nonsynonymous SNV	"Dazap1:NM_001122604:exon10:c.C782T:p.P261L,Dazap1:NM_001122605:exon10:c.C779T:p.P260L,Dazap1:NM_001378995:exon10:c.C782T:p.P261L,Dazap1:NM_133188:exon10:c.C779T:p.P260L"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.09584972	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	82	2	1	0.5	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M5	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	49	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.928274	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80315259	12A2p6	cell line	sgMsh2	80315259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	40	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.T6059C:p.V2020A,Apc2:NM_001372237:exon15:c.T6146C:p.V2049A,Apc2:NM_001372238:exon15:c.T6149C:p.V2050A,Apc2:NM_001372239:exon15:c.T6074C:p.V2025A,Apc2:NM_001372240:exon15:c.T6188C:p.V2063A,Apc2:NM_001372241:exon15:c.T6185C:p.V2062A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.983138	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	24	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9552378	GTA	synonymous	NA	NA	NA	NA
M5	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	39	51	18	0.352941176	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9782033	GTA	synonymous	NA	NA	NA	NA
M5	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	29	5	1	0.2	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9645576	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	26	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.09747376	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80360535	12A2p6	cell line	sgMsh2	80360535	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	33	0	0	NA	exonic	Plk5	synonymous SNV	"Plk5:NM_001347124:exon8:c.C939T:p.G313G,Plk5:NM_183152:exon8:c.C951T:p.G317G"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.746257842	1	0.7320723	GCC	synonymous	NA	NA	NA	NA
M5	chr10	80387165	12A2p6	cell line	sgMsh2	80387165	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	12	50	15	0.3	exonic	Mex3d	nonsynonymous SNV	Mex3d:NM_198615:exon1:c.G256A:p.D86N	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9093297	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	32	2	1	0.5	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	97	30	0.309278351	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9690599	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	116	131	27	0.20610687	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.750497943	2	0.5543303	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	108	139	31	0.223021583	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	80853072	12A2p6	cell line	sgMsh2	80853072	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	86	4	1	0.25	exonic	Lsm7	nonsynonymous SNV	"Lsm7:NM_001359148:exon4:c.G201T:p.E67D,Lsm7:NM_001359149:exon4:c.G231T:p.E77D,Lsm7:NM_001359150:exon4:c.G228T:p.E76D,Lsm7:NM_025349:exon4:c.G198T:p.E66D"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9869787	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	81178079	12A2p6	cell line	sgMsh2	81178079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	74	6599	1468	0.222457948	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon3:c.C245A:p.S82Y	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9979776	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	52	29	6	0.206896552	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	81361426	12A2p6	cell line	sgMsh2	81361426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	47	10	1	0.1	exonic	Mfsd12	frameshift deletion	Mfsd12:NM_028657:exon4:c.752delC:p.L253Wfs*23	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	139	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	126	9	3	0.333333333	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	0.5326367	TTG	synonymous	NA	NA	NA	NA
M5	chr10	82226068	12A2p6	cell line	sgMsh2	82226068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	133	29	9	0.310344828	exonic	Zfp938	synonymous SNV	"Zfp938:NM_001105557:exon4:c.C717A:p.S239S,Zfp938:NM_001379437:exon4:c.C603A:p.S201S,Zfp938:NM_001379438:exon5:c.C699A:p.S233S"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	AGG	synonymous	NA	NA	NA	NA
M5	chr10	82670328	12A2p6	cell line	sgMsh2	82670328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	182	1	0	0	exonic	Glt8d2	nonsynonymous SNV	Glt8d2:NM_029102:exon3:c.G68A:p.G23E	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999977	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr10	87581906	12A2p6	cell line	sgMsh2	87581906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	106	0	0	NA	exonic	Pah	nonsynonymous SNV	Pah:NM_008777:exon12:c.A1258G:p.R420G	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997286	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	88174395	12A2p6	cell line	sgMsh2	88174395	G	A	SNV	Mutect2;Vardict	2	0.102	154	142	0	0	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon7:c.G550A:p.A184T,Nup37:NM_028334:exon7:c.G550A:p.A184T"	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.43249034	2	8.83E-08	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr10	88472758	12A2p6	cell line	sgMsh2	88472758	A	-	Deletion	Strelka2;Vardict	2	0.1616	99	17	1	0.058823529	exonic	Sycp3	frameshift deletion	Sycp3:NM_011517:exon8:c.689delA:p.V233Lfs*1	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.685200382	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M5	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	86	53	9	0.169811321	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.7386082	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	81	47	9	0.191489362	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9476449	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr10	88905051	12A2p6	cell line	sgMsh2	88905051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	150	0	0	NA	exonic	Slc5a8	nonsynonymous SNV	Slc5a8:NM_145423:exon6:c.C827T:p.A276V	10qC1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999829	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	122	75	22	0.293333333	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999006	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	116	661	166	0.251134644	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9808851	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr10	100539045	12A2p6	cell line	sgMsh2	100539045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	161	50	11	0.22	exonic	Cep290	synonymous SNV	Cep290:NM_146009:exon32:c.G4152A:p.E1384E	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999914	AGC	synonymous	NA	NA	NA	NA
M5	chr10	100612845	12A2p6	cell line	sgMsh2	100612845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	140	0	0	NA	exonic	1700017N19Rik	nonsynonymous SNV	1700017N19Rik:NM_001081246:exon11:c.G1021T:p.D341Y	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9993915	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr10	102388462	12A2p6	cell line	sgMsh2	102388462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	201	0	0	NA	exonic	Mgat4c	nonsynonymous SNV	"Mgat4c:NM_026243:exon4:c.A536G:p.Y179C,Mgat4c:NM_001162368:exon6:c.A536G:p.Y179C,Mgat4c:NM_001162369:exon6:c.A536G:p.Y179C,Mgat4c:NM_001205098:exon8:c.A536G:p.Y179C"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9999524	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	103170645	12A2p6	cell line	sgMsh2	103170645	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	221	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	Lrriq1:NM_001163559:exon16:c.G3618T:p.E1206D	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	106858253	12A2p6	cell line	sgMsh2	106858253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	Ppfia2	nonsynonymous SNV	"Ppfia2:NM_001359677:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359678:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359679:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359680:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359681:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359682:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359683:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359684:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359685:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359686:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359687:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359688:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359689:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359690:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359691:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359692:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359693:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359694:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359695:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359696:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359697:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359698:exon15:c.C1865T:p.A622V,Ppfia2:NM_001205341:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359672:exon17:c.C2099T:p.A700V,Ppfia2:NM_001359673:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359674:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359675:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359676:exon17:c.C2087T:p.A696V,Ppfia2:NM_177373:exon17:c.C2087T:p.A696V"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr10	106952043	12A2p6	cell line	sgMsh2	106952043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	89	0	0	NA	exonic	Acss3	synonymous SNV	Acss3:NM_001142804:exon12:c.A1512G:p.P504P	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	GTG	synonymous	NA	NA	NA	NA
M5	chr10	106965999	12A2p6	cell line	sgMsh2	106965999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	89	0	0	NA	exonic	Acss3	stoploss	Acss3:NM_198636:exon11:c.T1492C:p.X498R	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9935443	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr10	107586751	12A2p6	cell line	sgMsh2	107586751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	136	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon28:c.A4779G:p.E1593E,Ptprq:NM_001370987:exon28:c.A4782G:p.E1594E"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999588	CTT	synonymous	NA	NA	NA	NA
M5	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	80	152	22	0.144736842	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	104	54	10	0.185185185	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	TAC	synonymous	NA	NA	NA	NA
M5	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	146	2	0	0	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	117676081	12A2p6	cell line	sgMsh2	117676081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	118	1	1	1	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon7:c.A929G:p.Q310R	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	117690275	12A2p6	cell line	sgMsh2	117690275	T	-	Deletion	Strelka2;Vardict	2	0.2034	177	131	21	0.160305344	exonic	Mdm2	frameshift deletion	"Mdm2:NM_001288586:exon11:c.1258delA:p.R420Efs*13,Mdm2:NM_010786:exon12:c.1405delA:p.R469Efs*13"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.86243662	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M5	chr10	120084913	12A2p6	cell line	sgMsh2	120084913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	144	17	2	0.117647059	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon13:c.A3124G:p.T1042A	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	120146474	12A2p6	cell line	sgMsh2	120146474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	138	1	0	0	exonic	Irak3	nonsynonymous SNV	"Irak3:NM_001359184:exon9:c.A806G:p.Q269R,Irak3:NM_028679:exon9:c.A1082G:p.Q361R"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	56	5	0	0	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.733537538	1	0.5988587	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M5	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	61	7	2	0.285714286	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.954784	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	160	91	29	0.318681319	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9818958	TTT	nonsynonymous	T	5	TTTTT	NA
M5	chr10	121615116	12A2p6	cell line	sgMsh2	121615116	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	96	201	22	0.109452736	exonic	Xpot	frameshift deletion	"Xpot:NM_001081056:exon6:c.378delT:p.F126Lfs*8,Xpot:NM_001359618:exon6:c.378delT:p.F126Lfs*8"	10qD2	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M5	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	117	5	5	1	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	62	11	3	0.272727273	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	CCG	synonymous	NA	NA	NA	NA
M5	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	125	121	10	0.082644628	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr10	127444363	12A2p6	cell line	sgMsh2	127444363	A	-	Deletion	Strelka2;Vardict	2	0.2667	45	111	9	0.081081081	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359243:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359245:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359246:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_027900:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001168292:exon3:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359244:exon4:c.53delA:p.K20Nfs*6"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	115	2	1	0.5	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	121	59	16	0.271186441	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	83	59	14	0.237288136	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	AAC	synonymous	NA	NA	NA	NA
M5	chr10	128042956	12A2p6	cell line	sgMsh2	128042956	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	38	0	0	NA	exonic	Naca	nonsynonymous SNV	Naca:NM_001113199:exon3:c.C3856A:p.P1286T	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	2	1	1	0.9809238	CCC	nonsynonymous	A	5	AAAAA	NA
M5	chr10	128125327	12A2p6	cell line	sgMsh2	128125327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	216	41	12	0.292682927	exonic	Baz2a	nonsynonymous SNV	Baz2a:NM_054078:exon26:c.A4909G:p.S1637G	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9999857	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	213	160	46	0.2875	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9999618	CAC	synonymous	NA	NA	NA	NA
M5	chr10	128519189	12A2p6	cell line	sgMsh2	128519189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	170	130	44	0.338461538	exonic	Esyt1	nonsynonymous SNV	Esyt1:NM_011843:exon14:c.A1468G:p.N490D	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999951	TTG	nonsynonymous	GGGTT	10	GGGTTGGGTT	NA
M5	chr10	128521621	12A2p6	cell line	sgMsh2	128521621	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	149	104	1	0.009615385	exonic	Esyt1	stopgain	Esyt1:NM_011843:exon7:c.G823T:p.G275X	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr10	129321725	12A2p6	cell line	sgMsh2	129321725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	172	0	0	NA	exonic	Olfr780	nonsynonymous SNV	Olfr780:NM_146284:exon1:c.T101C:p.L34P	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999957	CTA	nonsynonymous	ACCT	9	ACCTACCTA	NA
M5	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	161	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999914	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	68	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9773179	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M5	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	95	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	129842856	12A2p6	cell line	sgMsh2	129842856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	198	0	0	NA	exonic	Olfr812	nonsynonymous SNV	Olfr812:NM_146795:exon1:c.G185A:p.R62Q	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	211	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	262	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr10	130074983	12A2p6	cell line	sgMsh2	130074983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	315	0	0	NA	exonic	Olfr822	nonsynonymous SNV	Olfr822:NM_146671:exon1:c.A572G:p.Q191R	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	312	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr11	3360509	12A2p6	cell line	sgMsh2	3360509	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	75	115	35	0.304347826	exonic	Limk2	nonsynonymous SNV	"Limk2:NM_001361623:exon2:c.G131T:p.W44L,Limk2:NM_173053:exon2:c.G131T:p.W44L,Limk2:NM_010718:exon3:c.G194T:p.W65L"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr11	3530029	12A2p6	cell line	sgMsh2	3530029	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	66	29	7	0.24137931	exonic	Smtn	nonsynonymous SNV	"Smtn:NM_001284427:exon10:c.A1191T:p.E397D,Smtn:NM_013870:exon10:c.A1191T:p.E397D,Smtn:NM_001159284:exon11:c.A1191T:p.E397D,Smtn:NM_001284428:exon11:c.A1191T:p.E397D,Smtn:NM_001284429:exon11:c.A444T:p.E148D"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9597954	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	92	20	1	0.05	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CTG	synonymous	NA	NA	NA	NA
M5	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	88	1	1	1	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	4943869	12A2p6	cell line	sgMsh2	4943869	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	88	0	0	NA	exonic	Nefh	nonsynonymous SNV	Nefh:NM_010904:exon3:c.T1184C:p.I395T	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	5062477	12A2p6	cell line	sgMsh2	5062477	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.363	66	32	4	0.125	exonic	Gas2l1	frameshift deletion	"Gas2l1:NM_001190408:exon4:c.776delG:p.G259Afs*9,Gas2l1:NM_030228:exon5:c.776delG:p.G259Afs*9,Gas2l1:NM_144560:exon5:c.776delG:p.G259Afs*9"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	28	28	4	0.142857143	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9648342	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	5281768	12A2p6	cell line	sgMsh2	5281768	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	67	9	4	0.444444444	exonic	Znrf3	nonsynonymous SNV	"Znrf3:NM_001080924:exon8:c.T1744A:p.F582I,Znrf3:NM_001290501:exon9:c.T1456A:p.F486I"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	5799332	12A2p6	cell line	sgMsh2	5799332	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	53	188	44	0.234042553	exonic	Dbnl	synonymous SNV	"Dbnl:NM_001146308:exon12:c.C1164T:p.Y388Y,Dbnl:NM_001146309:exon12:c.C1152T:p.Y384Y,Dbnl:NM_013810:exon12:c.C1155T:p.Y385Y"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9610356	ACC	synonymous	CAGG	8	CAGGCAGG	NA
M5	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	125	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9977922	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	80	46	14	0.304347826	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9974216	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	6511565	12A2p6	cell line	sgMsh2	6511565	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	55	0	0	NA	exonic	Myo1g	nonsynonymous SNV	Myo1g:NM_178440:exon15:c.G1885A:p.E629K	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr11	6601350	12A2p6	cell line	sgMsh2	6601350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	40	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1840G:p.S614G	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.983138	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	144	1	0	0	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.64873551	2	0.9946847	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	6605651	12A2p6	cell line	sgMsh2	6605651	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	26	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon1:c.C98A:p.A33D	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9603133	GGC	nonsynonymous	G	14	GGGGGGGGGGGGGG	NA
M5	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	87	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991052	GTG	synonymous	NA	NA	NA	NA
M5	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	32	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9473685	GTC	synonymous	NA	NA	NA	NA
M5	chr11	16883544	12A2p6	cell line	sgMsh2	16883544	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	137	2	1	0.5	exonic	Egfr	nonsynonymous SNV	"Egfr:NM_007912:exon15:c.A1811C:p.N604T,Egfr:NM_207655:exon15:c.A1811C:p.N604T"	11qA2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9970534	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	102	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	TTA	synonymous	NA	NA	NA	NA
M5	chr11	20021442	12A2p6	cell line	sgMsh2	20021442	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	75	59	24	0.406779661	exonic	Spred2	nonsynonymous SNV	Spred2:NM_033523:exon6:c.G1228A:p.A410T	11qA3.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CGC	nonsynonymous	GCC	8	GCCGCCGC	NA
M5	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	153	640	141	0.2203125	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9982086	GCA	synonymous	NA	NA	NA	NA
M5	chr11	21148451	12A2p6	cell line	sgMsh2	21148451	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	120	68	13	0.191176471	exonic	Peli1	synonymous SNV	Peli1:NM_023324:exon7:c.C1185T:p.C395C	11qA3.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.6975003	GCC	synonymous	NA	NA	NA	NA
M5	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	8	3	0.375	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9963618	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	23367343	12A2p6	cell line	sgMsh2	23367343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	62	55	18	0.327272727	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon16:c.A2401G:p.M801V	11qA3.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	23516464	12A2p6	cell line	sgMsh2	23516464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	165	0	0	NA	exonic	1700093K21Rik	synonymous SNV	"1700093K21Rik:NM_001110133:exon5:c.T513C:p.A171A,1700093K21Rik:NM_026105:exon5:c.T513C:p.A171A,1700093K21Rik:NM_001370913:exon6:c.T513C:p.A171A"	11qA3.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999933	GAG	synonymous	NA	NA	NA	NA
M5	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	114	6	0	0	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9998358	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M5	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	148	132	25	0.189393939	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999806	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	151	69	19	0.275362319	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	149	27	7	0.259259259	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	83	58	16	0.275862069	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	CTT	synonymous	NA	NA	NA	NA
M5	chr11	32612696	12A2p6	cell line	sgMsh2	32612696	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	56	50	11	0.22	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon14:c.A1511C:p.K504T,Stk10:NM_001359178:exon14:c.A1418C:p.K473T,Stk10:NM_009288:exon14:c.A2105C:p.K702T"	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	153	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999858	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	96	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9747704	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	166	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999937	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	57	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9538016	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	35698444	12A2p6	cell line	sgMsh2	35698444	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.24	24	0	0	NA	exonic	Slit3	synonymous SNV	Slit3:NM_011412:exon33:c.C3825T:p.S1275S	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9552378	GCC	synonymous	C	5	CCCCC	NA
M5	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	44	189	41	0.216931217	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9868351	CAC	synonymous	NA	NA	NA	NA
M5	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	138	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999636	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M5	chr11	36024130	12A2p6	cell line	sgMsh2	36024130	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	238	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon26:c.C6483T:p.T2161T,Tenm2:NM_011856:exon27:c.C6576T:p.T2192T"	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	AGG	synonymous	GTCATA	13	GTCATAGTCATAG	NA
M5	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	153	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9998077	GTT	synonymous	NA	NA	NA	NA
M5	chr11	36944005	12A2p6	cell line	sgMsh2	36944005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	63	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon1:c.A162G:p.R54R,Tenm2:NM_011856:exon1:c.A162G:p.R54R"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	TTC	synonymous	NA	NA	NA	NA
M5	chr11	41912364	12A2p6	cell line	sgMsh2	41912364	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	143	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_177408:exon9:c.C1353A:p.A451A,Gabrg2:NM_008073:exon10:c.C1377A:p.A459A,Gabrg2:NM_001362655:exon11:c.C1323A:p.A441A,Gabrg2:NM_001362656:exon11:c.C1320A:p.A440A"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999734	AGG	synonymous	NA	NA	NA	NA
M5	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	121	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	CTG	synonymous	NA	NA	NA	NA
M5	chr11	42317608	12A2p6	cell line	sgMsh2	42317608	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	130	0	0	NA	exonic	Gabra6	frameshift deletion	"Gabra6:NM_001099641:exon4:c.396delC:p.N133Tfs*5,Gabra6:NM_001359049:exon4:c.393delC:p.N132Tfs*5,Gabra6:NM_008068:exon4:c.366delC:p.N123Tfs*5"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	80	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.521532469	2	0.9938922	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	128	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.6873118	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	182	79	6	0.075949367	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999977	AAC	synonymous	AACA	8	AACAAACA	NA
M5	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	49	4	0	0	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9587382	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	89	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9992108	ATG	synonymous	NA	NA	NA	NA
M5	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	322	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	2.80E-09	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	245	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	4.48E-08	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	86	4	1	0.25	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9927459	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	45	2	0	0	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9876267	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	102	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9923725	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	50853382	12A2p6	cell line	sgMsh2	50853382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	83	0	0	NA	exonic	Grm6	nonsynonymous SNV	Grm6:NM_173372:exon3:c.T679C:p.F227L	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	65	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.8744209	GCC	synonymous	NA	NA	NA	NA
M5	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	75	18	0.24	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.767458349	2	0.507695	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	102	9	2	0.222222222	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	52037476	12A2p6	cell line	sgMsh2	52037476	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	198	3	0	0	exonic	Cdkl3	frameshift deletion	Cdkl3:NM_153785:exon13:c.1771delT:p.S594Pfs*8	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M5	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	140	208	6	0.028846154	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.826819768	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr11	53463343	12A2p6	cell line	sgMsh2	53463343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	44	11	2	0.181818182	exonic	Shroom1	nonsynonymous SNV	"Shroom1:NM_001290789:exon2:c.A89G:p.D30G,Shroom1:NM_027917:exon2:c.A89G:p.D30G"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	55	59	19	0.322033898	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9912283	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	64	12	0.1875	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.09305785	GTA	synonymous	NA	NA	NA	NA
M5	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	159	3	1	0.333333333	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9998196	AAC	nonsynonymous	A	5	AAAAA	NA
M5	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	41	67	10	0.149253731	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9841483	GTA	synonymous	NA	NA	NA	NA
M5	chr11	55284313	12A2p6	cell line	sgMsh2	55284313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	127	7	0	0	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon9:c.T5573C:p.V1858A	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999274	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	84	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	121	63	16	0.253968254	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9951568	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M5	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.084	457	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.356168516	3	4.81E-09	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M5	chr11	58831496	12A2p6	cell line	sgMsh2	58831496	C	G	SNV	Mutect2;Vardict	2	0.017	529	0	0	NA	exonic	Olfr312	nonsynonymous SNV	Olfr312:NM_001011819:exon1:c.C341G:p.T114R	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.072081723	3	1	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr11	58937150	12A2p6	cell line	sgMsh2	58937150	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	82	207	51	0.246376812	exonic	Rnf187	nonsynonymous SNV	Rnf187:NM_022423:exon2:c.C473A:p.A158D	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr11	59002999	12A2p6	cell line	sgMsh2	59002999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	59	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon89:c.C20241A:p.S6747S	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9948274	AGG	synonymous	NA	NA	NA	NA
M5	chr11	59007711	12A2p6	cell line	sgMsh2	59007711	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	117	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon85:c.T19723C:p.F6575L	11qB1.3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8743717	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	35	88	18	0.204545455	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9532807	ACG	synonymous	NA	NA	NA	NA
M5	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	79	62	15	0.241935484	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	61749013	12A2p6	cell line	sgMsh2	61749013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	234	14	3	0.214285714	exonic	Prpsap2	nonsynonymous SNV	"Prpsap2:NM_001164244:exon4:c.T53C:p.I18T,Prpsap2:NM_001164242:exon5:c.T311C:p.I104T,Prpsap2:NM_001164243:exon5:c.T53C:p.I18T,Prpsap2:NM_001364088:exon5:c.T74C:p.I25T,Prpsap2:NM_001364087:exon6:c.T311C:p.I104T,Prpsap2:NM_001364090:exon6:c.T53C:p.I18T,Prpsap2:NM_144806:exon6:c.T311C:p.I104T,Prpsap2:NM_001364086:exon7:c.T311C:p.I104T"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	62219339	12A2p6	cell line	sgMsh2	62219339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	69	56	16	0.285714286	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon13:c.T2902C:p.Y968H,Specc1:NM_001281818:exon15:c.T3142C:p.Y1048H"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	2	1	1	0.9972334	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	78	153	32	0.209150327	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	68	234	14	0.05982906	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.215	228	1435	442	0.308013937	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9999301	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr11	62582966	12A2p6	cell line	sgMsh2	62582966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	35	0	0	NA	exonic	Trpv2	nonsynonymous SNV	"Trpv2:NM_001382489:exon4:c.A446G:p.N149S,Trpv2:NM_001382491:exon4:c.A446G:p.N149S,Trpv2:NM_001382492:exon4:c.A446G:p.N149S,Trpv2:NM_011706:exon5:c.A446G:p.N149S,Trpv2:NM_001382490:exon6:c.A446G:p.N149S"	11qB2	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.976164	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	65003428	12A2p6	cell line	sgMsh2	65003428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	33	4	2	0.5	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_001099288:exon20:c.C2310A:p.P770P	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	AGG	synonymous	TGGA	8	TGGATGGA	NA
M5	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	107	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9972207	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9752582	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	194	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	GTG	synonymous	NA	NA	NA	NA
M5	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	134	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.998668	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	221	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	137	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	67259361	12A2p6	cell line	sgMsh2	67259361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	63	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon39:c.C5643A:p.A1881A	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.695376626	2	0.6214532	CCT	synonymous	NA	NA	NA	NA
M5	chr11	67329005	12A2p6	cell line	sgMsh2	67329005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	147	0	0	NA	exonic	Myh13	nonsynonymous SNV	Myh13:NM_001081250:exon2:c.A260G:p.K87R	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	24	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9481586	AAC	synonymous	NA	NA	NA	NA
M5	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	294	57	4	0.070175439	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9964842	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	69348933	12A2p6	cell line	sgMsh2	69348933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	112	325	62	0.190769231	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon32:c.A5068G:p.R1690G	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9997159	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	69437293	12A2p6	cell line	sgMsh2	69437293	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	55	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon65:c.C10003A:p.L3335M	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	69478795	12A2p6	cell line	sgMsh2	69478795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	98	0	0	NA	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon30:c.A4854G:p.A1618A	11qB3	chr11-3133045-69578588	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9969168	CTG	synonymous	NA	NA	NA	NA
M5	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	45	27	5	0.185185185	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-69578589-69590980	1	1	0	0.99	4.197700362	NA	1	0.886181188	1	0.9414097	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	58	140	28	0.2	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	2	1	1	0.9944939	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	69760249	12A2p6	cell line	sgMsh2	69760249	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	78	1	0	0	exonic	Slc35g3	synonymous SNV	Slc35g3:NM_019871:exon2:c.C975A:p.L325L	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9984262	AGA	synonymous	NA	NA	NA	NA
M5	chr11	69776029	12A2p6	cell line	sgMsh2	69776029	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	38	27	8	0.296296296	exonic	Zbtb4	synonymous SNV	"Zbtb4:NM_001363178:exon3:c.C159A:p.P53P,Zbtb4:NM_029348:exon3:c.C159A:p.P53P"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9809238	CCT	synonymous	NA	NA	NA	NA
M5	chr11	69821960	12A2p6	cell line	sgMsh2	69821960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	96	0	0	NA	exonic	Spem1	synonymous SNV	Spem1:NM_028855:exon1:c.C141A:p.T47T	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.970983215	1	0.9987848	GGG	synonymous	NA	NA	NA	NA
M5	chr11	69825411	12A2p6	cell line	sgMsh2	69825411	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.499	7	7	2	0.285714286	exonic	Nlgn2	nonsynonymous SNV	"Nlgn2:NM_198862:exon7:c.C2303T:p.P768L,Nlgn2:NM_001364137:exon8:c.C2303T:p.P768L"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	2	1	1	0.8793395	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	69883732	12A2p6	cell line	sgMsh2	69883732	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	45	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon18:c.G1703A:p.S568N	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9876267	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	57	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.733537538	1	0.5939059	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	69966001	12A2p6	cell line	sgMsh2	69966001	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	28	2	0	0	exonic	Cldn7	synonymous SNV	"Cldn7:NM_016887:exon1:c.T75G:p.T25T,Cldn7:NM_001193619:exon2:c.T75G:p.T25T"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.729297437	1	0.718916	CTG	synonymous	NA	NA	NA	NA
M5	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	59	14	4	0.285714286	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	2	1	1	0.9948274	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	70396878	12A2p6	cell line	sgMsh2	70396878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	115	63	13	0.206349206	exonic	Pelp1	nonsynonymous SNV	Pelp1:NM_029231:exon11:c.T1217C:p.V406A	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.937062404	1	0.9985163	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	70610394	12A2p6	cell line	sgMsh2	70610394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	93	99	23	0.232323232	exonic	Mink1	synonymous SNV	"Mink1:NM_016713:exon22:c.A2703G:p.G901G,Mink1:NM_001045959:exon23:c.A2814G:p.G938G,Mink1:NM_176893:exon23:c.A2727G:p.G909G,Mink1:NM_001045964:exon24:c.A2835G:p.G945G"	11qB3	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.999386	GAG	synonymous	NA	NA	NA	NA
M5	chr11	70974987	12A2p6	cell line	sgMsh2	70974987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	101	43	10	0.23255814	exonic	Rpain	nonsynonymous SNV	Rpain:NM_027186:exon6:c.T577C:p.F193L	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.750497943	1	0.5027136	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	73	3	1	0.333333333	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9978467	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M5	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	102	2	0	0	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9996511	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	65	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9964459	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	72831554	12A2p6	cell line	sgMsh2	72831554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	9	1	0.111111111	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon8:c.C1406T:p.T469I	11qB4	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.886181188	1	0.9842735	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	112	31	8	0.258064516	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9998138	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	170	147	37	0.25170068	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9999951	CAC	synonymous	NA	NA	NA	NA
M5	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	76	88	25	0.284090909	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.733537538	2	0.5027062	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	40	14	3	0.214285714	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.983138	GTA	synonymous	NA	NA	NA	NA
M5	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	122	20	7	0.35	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.89466139	1	0.9944842	ATG	synonymous	NA	NA	NA	NA
M5	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	69	19	3	0.157894737	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.898901492	1	0.9759711	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	76456674	12A2p6	cell line	sgMsh2	76456674	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	71	79	21	0.265822785	exonic	Abr	nonsynonymous SNV	"Abr:NM_001291186:exon6:c.A577C:p.M193L,Abr:NM_001346670:exon10:c.A1120C:p.M374L,Abr:NM_198018:exon10:c.A1267C:p.M423L,Abr:NM_198894:exon11:c.A1093C:p.M365L,Abr:NM_198895:exon11:c.A1231C:p.M411L"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.9243421	1	0.9870271	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr11	77846925	12A2p6	cell line	sgMsh2	77846925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	88	186	42	0.225806452	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon30:c.A3839G:p.Y1280C,Myo18a:NM_011586:exon31:c.A4844G:p.Y1615C,Myo18a:NM_001291212:exon32:c.A4880G:p.Y1627C,Myo18a:NM_001291213:exon32:c.A4988G:p.Y1663C,Myo18a:NM_001291215:exon33:c.A3905G:p.Y1302C"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.805619261	1	0.8490852	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	77972976	12A2p6	cell line	sgMsh2	77972976	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	60	0	0	NA	exonic	Sez6	synonymous SNV	"Sez6:NM_001291225:exon6:c.C1360T:p.L454L,Sez6:NM_021286:exon6:c.C1360T:p.L454L"	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9951408	CCT	synonymous	CTGCAC	12	CTGCACCTGCAC	NA
M5	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	48	214	61	0.285046729	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.835299971	1	0.8903226	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	77	73	18	0.246575342	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	0.920101999	1	0.9886203	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	54	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9929322	CTG	synonymous	NA	NA	NA	NA
M5	chr11	79386676	12A2p6	cell line	sgMsh2	79386676	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.243	115	31	0	0	exonic	Nf1	frameshift insertion	Nf1:NM_010897:exon3:c.227dupA:p.N78Kfs*28	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
M5	chr11	79535822	12A2p6	cell line	sgMsh2	79535822	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	116	24	5	0.208333333	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon37:c.G5061T:p.W1687C	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9998552	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	70	75	25	0.333333333	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9974014	CTA	synonymous	NA	NA	NA	NA
M5	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	147	217	60	0.276497696	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.99	4.197700362	NA	1	1	1	0.9999793	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	170	70	18	0.257142857	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999951	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	145	82	23	0.280487805	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	224	31	9	0.290322581	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.746257842	2	0.8970159	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	189	24	6	0.25	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999985	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	123	56	8	0.142857143	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999067	CAA	synonymous	CCT	8	CCTCCTCC	NA
M5	chr11	86329219	12A2p6	cell line	sgMsh2	86329219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	113	64	20	0.3125	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon6:c.A958G:p.M320V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9997322	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	87	5	0	0	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9889722	CCA	synonymous	NA	NA	NA	NA
M5	chr11	86548864	12A2p6	cell line	sgMsh2	86548864	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	191	19	2	0.105263158	exonic	Tubd1	nonsynonymous SNV	"Tubd1:NM_001199045:exon2:c.G34T:p.G12C,Tubd1:NM_001199046:exon2:c.G34T:p.G12C,Tubd1:NM_001199047:exon2:c.G34T:p.G12C,Tubd1:NM_019756:exon2:c.G34T:p.G12C"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	0.9470555	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	214	24	4	0.166666667	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8783782	CTA	synonymous	NA	NA	NA	NA
M5	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	181	50	0.276243094	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	89	72	15	0.208333333	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	2	1	1	0.9688568	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	146	14	7	0.5	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.9319707	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr11	90276799	12A2p6	cell line	sgMsh2	90276799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	67	102	33	0.323529412	exonic	Mmd	nonsynonymous SNV	Mmd:NM_026178:exon7:c.T653C:p.V218A	11qC	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	90535521	12A2p6	cell line	sgMsh2	90535521	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	39	17	2	0.117647059	exonic	Stxbp4	frameshift deletion	Stxbp4:NM_011505:exon16:c.1460delA:p.K487Rfs*35	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr11	94238328	12A2p6	cell line	sgMsh2	94238328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	128	0	0	NA	exonic	Wfikkn2	nonsynonymous SNV	Wfikkn2:NM_181819:exon2:c.G986A:p.S329N	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999318	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	96	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994914	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	67	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.644495409	2	0.8445622	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	94647955	12A2p6	cell line	sgMsh2	94647955	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	148	33	5	0.151515152	exonic	Eme1	synonymous SNV	"Eme1:NM_177752:exon5:c.G1098A:p.E366E,Eme1:NM_001379688:exon6:c.G1155A:p.E385E"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999806	TCT	synonymous	NA	NA	NA	NA
M5	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	81	23	2	0.086956522	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	94945535	12A2p6	cell line	sgMsh2	94945535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Col1a1	synonymous SNV	Col1a1:NM_007742:exon31:c.A2031G:p.Q677Q	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	AAG	synonymous	NA	NA	NA	NA
M5	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	86	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	126	58	12	0.206896552	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8944628	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	96934585	12A2p6	cell line	sgMsh2	96934585	A	-	Deletion	Strelka2;Vardict	2	0.2188	64	77	7	0.090909091	exonic	Prr15l	frameshift deletion	Prr15l:NM_146026:exon3:c.40delA:p.K16Nfs*92	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.927734181	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M5	chr11	96961294	12A2p6	cell line	sgMsh2	96961294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	79	39	8	0.205128205	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon3:c.T800C:p.V267A,Sp2:NM_001363226:exon3:c.T785C:p.V262A,Sp2:NM_030220:exon3:c.T803C:p.V268A,Sp2:NM_001363225:exon4:c.T785C:p.V262A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	97114689	12A2p6	cell line	sgMsh2	97114689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	55	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon1:c.A449G:p.N150S	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	97334465	12A2p6	cell line	sgMsh2	97334465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	139	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon12:c.A6863G:p.Y2288C	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	97351746	12A2p6	cell line	sgMsh2	97351746	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	52	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon2:c.G271T:p.V91F	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	100	1	0	0	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996044	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	97806853	12A2p6	cell line	sgMsh2	97806853	A	G	SNV	Mutect2;Vardict	2	0.046	289	828	23	0.027777778	exonic	Lasp1	nonsynonymous SNV	Lasp1:NM_010688:exon2:c.A98G:p.E33G	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.195044663	3	1	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	82	884	215	0.24321267	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	ATG	synonymous	NA	NA	NA	NA
M5	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	54	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9750712	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.2727	44	44	4	0.090909091	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M5	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	130	81	18	0.222222222	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	AAG	synonymous	NA	NA	NA	NA
M5	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	132	1	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.999947	CAT	synonymous	NA	NA	NA	NA
M5	chr11	98995876	12A2p6	cell line	sgMsh2	98995876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	170	733	162	0.22100955	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon31:c.T4050C:p.T1350T	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9920186	GAG	synonymous	NA	NA	NA	NA
M5	chr11	99003065	12A2p6	cell line	sgMsh2	99003065	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	108	328	62	0.18902439	exonic	Top2a	nonsynonymous SNV	Top2a:NM_011623:exon24:c.T3002G:p.L1001R	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr11	99949306	12A2p6	cell line	sgMsh2	99949306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	303	0	0	NA	exonic	Krtap9-5	nonsynonymous SNV	Krtap9-5:NM_001085527:exon1:c.A832G:p.T278A	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.999995	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	99985643	12A2p6	cell line	sgMsh2	99985643	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	75	0	0	NA	exonic	Krtap16-1	nonsynonymous SNV	Krtap16-1:NM_001256057:exon1:c.G934C:p.V312L	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	ACC	nonsynonymous	CA	9	CACACACAC	NA
M5	chr11	100134462	12A2p6	cell line	sgMsh2	100134462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	144	1	1	1	exonic	Krt15	nonsynonymous SNV	Krt15:NM_008469:exon2:c.A548G:p.D183G	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	100336894	12A2p6	cell line	sgMsh2	100336894	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	35	0	0	NA	exonic	Gast	nonsynonymous SNV	Gast:NM_010257:exon3:c.C301A:p.Q101K	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9739043	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr11	100592887	12A2p6	cell line	sgMsh2	100592887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	127	301	71	0.235880399	exonic	Dnajc7	synonymous SNV	"Dnajc7:NM_001378962:exon6:c.T519C:p.L173L,Dnajc7:NM_019795:exon6:c.T567C:p.L189L"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999274	CAA	synonymous	NA	NA	NA	NA
M5	chr11	101020563	12A2p6	cell line	sgMsh2	101020563	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	53	417	78	0.18705036	exonic	Atp6v0a1	nonsynonymous SNV	"Atp6v0a1:NM_001243049:exon3:c.A107C:p.D36A,Atp6v0a1:NM_001362639:exon3:c.A107C:p.D36A,Atp6v0a1:NM_001243050:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001243051:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362636:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362637:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362638:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362640:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362641:exon4:c.A287C:p.D96A,Atp6v0a1:NM_016920:exon4:c.A287C:p.D96A"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9924774	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	113	59	13	0.220338983	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	115	39	3	0.076923077	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.999762	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	101156781	12A2p6	cell line	sgMsh2	101156781	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	8	0	0	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon3:c.C191T:p.A64V	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9809988	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	101166508	12A2p6	cell line	sgMsh2	101166508	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	25	23	3	0.130434783	exonic	Plekhh3	nonsynonymous SNV	"Plekhh3:NM_001346769:exon7:c.C922A:p.L308M,Plekhh3:NM_146030:exon7:c.C922A:p.L308M"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.8737075	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr11	101261018	12A2p6	cell line	sgMsh2	101261018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	37	28	10	0.357142857	exonic	Wnk4	nonsynonymous SNV	Wnk4:NM_175638:exon1:c.C347T:p.A116V	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9797122	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	100	204	39	0.191176471	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996044	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	33	10	2	0.2	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9139519	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr11	102361382	12A2p6	cell line	sgMsh2	102361382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	51	0	0	NA	exonic	Slc4a1	nonsynonymous SNV	Slc4a1:NM_011403:exon2:c.G14A:p.R5Q	11qD	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	93	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	87	20	8	0.4	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9988933	CCC	nonsynonymous	C	5	CCCCC	NA
M5	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	77	48	15	0.3125	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	GTC	synonymous	NA	NA	NA	NA
M5	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	97	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	TTC	synonymous	NA	NA	NA	NA
M5	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	31	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	2	1	1	9.91E-08	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr11	105973467	12A2p6	cell line	sgMsh2	105973467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	109	3	2	0.666666667	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon9:c.A1433G:p.Q478R,Ace:NM_207624:exon9:c.A1433G:p.Q478R"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997752	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	133	4	3	0.75	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	106248056	12A2p6	cell line	sgMsh2	106248056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	101	175	44	0.251428571	exonic	Ddx42	nonsynonymous SNV	"Ddx42:NM_001361642:exon11:c.A1894G:p.K632E,Ddx42:NM_001361640:exon13:c.A2191G:p.K731E,Ddx42:NM_001361644:exon13:c.A1888G:p.K630E,Ddx42:NM_001361643:exon17:c.A1888G:p.K630E,Ddx42:NM_028074:exon18:c.A2680G:p.K894E"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996285	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	181	337	90	0.267062315	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9999466	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	28	3	0.107142857	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	48	93	20	0.215053763	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9755517	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M5	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	85	48	14	0.291666667	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989856	ATA	synonymous	ATAA	8	ATAAATAA	NA
M5	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	129	27	11	0.407407407	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.999936	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	108498317	12A2p6	cell line	sgMsh2	108498317	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	147	4	0	0	exonic	Cep112	nonsynonymous SNV	"Cep112:NM_001373899:exon9:c.C839T:p.A280V,Cep112:NM_029606:exon10:c.C839T:p.A280V"	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9953007	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr11	110154560	12A2p6	cell line	sgMsh2	110154560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	57	1	1	1	exonic	Abca9	nonsynonymous SNV	Abca9:NM_147220:exon8:c.A946G:p.T316A	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9867886	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	110158302	12A2p6	cell line	sgMsh2	110158302	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.233	86	1	0	0	exonic	Abca9	frameshift insertion	Abca9:NM_147220:exon6:c.678dupT:p.I227Yfs*139	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.987943621	NA	NA	ATA	frameshift	A	5	AAAAA	1
M5	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.257	174	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999962	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	92	33	8	0.242424242	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	113657504	12A2p6	cell line	sgMsh2	113657504	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	66	72	16	0.222222222	exonic	Cog1	nonsynonymous SNV	Cog1:NM_013581:exon9:c.T2344C:p.Y782H	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9828517	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	114	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.754738045	2	0.5090905	CTT	synonymous	NA	NA	NA	NA
M5	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	274	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.83105987	1	0.9863149	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	115243868	12A2p6	cell line	sgMsh2	115243868	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	72	5	1	0.2	exonic	Tmem104	nonsynonymous SNV	Tmem104:NM_001033393:exon10:c.T1229G:p.L410R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9966936	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	115318437	12A2p6	cell line	sgMsh2	115318437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	51	12	0	0	exonic	Ush1g	frameshift deletion	Ush1g:NM_176847:exon2:c.930delC:p.G311Afs*11	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.496091861	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	71	110	23	0.209090909	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	26	28	4	0.142857143	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	2	1	1	0.9603133	GTT	synonymous	NA	NA	NA	NA
M5	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	58	20	7	0.35	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9549281	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	88	22	6	0.272727273	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr11	116080661	12A2p6	cell line	sgMsh2	116080661	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	58	134	4	0.029850746	exonic	Wbp2	frameshift deletion	Wbp2:NM_016852:exon5:c.417delC:p.N140Mfs*45	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.992183722	NA	NA	TGG	frameshift	NA	NA	NA	-1
M5	chr11	116106258	12A2p6	cell line	sgMsh2	116106258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	4	2	0.5	exonic	Trim47	nonsynonymous SNV	"Trim47:NM_001205081:exon6:c.T1672C:p.Y558H,Trim47:NM_172570:exon6:c.T1669C:p.Y557H"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9965233	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	150	45	0.3	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.6736754	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	127	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999274	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	38	49	10	0.204081633	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8289066	CAC	synonymous	NA	NA	NA	NA
M5	chr11	116595789	12A2p6	cell line	sgMsh2	116595789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	58	0	0	NA	exonic	Aanat	synonymous SNV	Aanat:NM_009591:exon2:c.G153A:p.R51R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9769343	GGG	synonymous	NA	NA	NA	NA
M5	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	93	3	1	0.333333333	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	116766260	12A2p6	cell line	sgMsh2	116766260	T	C	SNV	Mutect2;MuSe;Vardict	3	0.058	477	0	0	NA	exonic	St6galnac1	nonsynonymous SNV	St6galnac1:NM_011371:exon7:c.A1288G:p.R430G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.24592588	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	116873346	12A2p6	cell line	sgMsh2	116873346	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	146	50	12	0.24	exonic	Mfsd11	synonymous SNV	"Mfsd11:NM_001361586:exon12:c.C525T:p.S175S,Mfsd11:NM_001361587:exon12:c.C591T:p.S197S,Mfsd11:NM_178620:exon12:c.C1152T:p.S384S,Mfsd11:NM_001361585:exon13:c.C591T:p.S197S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.767458349	1	0.524658	GCG	synonymous	NA	NA	NA	NA
M5	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	66	180	54	0.3	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	GTG	synonymous	NA	NA	NA	NA
M5	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	30	156	43	0.275641026	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9688568	CTT	synonymous	NA	NA	NA	NA
M5	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	80	28	5	0.178571429	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr11	118119615	12A2p6	cell line	sgMsh2	118119615	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	55	0	0	NA	exonic	Dnah17	synonymous SNV	Dnah17:NM_001167746:exon11:c.G1761A:p.K587K	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	ACT	synonymous	NA	NA	NA	NA
M5	chr11	118393201	12A2p6	cell line	sgMsh2	118393201	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	99	537	113	0.210428305	exonic	Lgals3bp	synonymous SNV	Lgals3bp:NM_011150:exon6:c.C1551A:p.L517L	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.682656321	2	0.8870121	AGA	synonymous	NA	NA	NA	NA
M5	chr11	119029064	12A2p6	cell line	sgMsh2	119029064	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	137	22	4	0.181818182	exonic	Cbx2	nonsynonymous SNV	Cbx2:NM_007623:exon5:c.G1454T:p.S485I	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	40	8	4	0.5	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	2	1	1	0.983138	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr11	119350989	12A2p6	cell line	sgMsh2	119350989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	90	4	2	0.5	exonic	Sgsh	nonsynonymous SNV	Sgsh:NM_018822:exon3:c.A290G:p.H97R	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9678116	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr11	119436427	12A2p6	cell line	sgMsh2	119436427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	96	18	3	0.166666667	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.C5242A:p.L1748I	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994914	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.182	58	16	1	0.0625	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7412082	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	120001098	12A2p6	cell line	sgMsh2	120001098	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	19	13	7	0.538461538	exonic	Baiap2	synonymous SNV	"Baiap2:NM_001037754:exon14:c.A1443C:p.T481T,Baiap2:NM_130862:exon14:c.A1563C:p.T521T"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	2	1	1	0.9397096	CAG	synonymous	NA	NA	NA	NA
M5	chr11	120065989	12A2p6	cell line	sgMsh2	120065989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	32	29	11	0.379310345	exonic	Cep131	nonsynonymous SNV	Cep131:NM_009734:exon22:c.A2624G:p.E875G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	113	74	24	0.324324324	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8553249	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	37	19	3	0.157894737	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9797122	TAC	nonsynonymous	C	5	CCCCC	NA
M5	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	102	1799	339	0.188438021	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9711058	CTG	synonymous	NA	NA	NA	NA
M5	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	74	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9872708	GTG	synonymous	NA	NA	NA	NA
M5	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	67	276	81	0.293478261	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.885082	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr11	120964979	12A2p6	cell line	sgMsh2	120964979	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	76	183	45	0.245901639	exonic	Csnk1d	stoploss	Csnk1d:NM_027874:exon9:c.A1229C:p.X410S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr11	121117141	12A2p6	cell line	sgMsh2	121117141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	58	0	0	NA	exonic	Tex19.2	synonymous SNV	Tex19.2:NM_027622:exon3:c.T480G:p.S160S	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9829421	GAG	synonymous	NA	NA	NA	NA
M5	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	80	5	1	0.2	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	156	50	8	0.16	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M5	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	114	11	2	0.181818182	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.542732976	2	0.9994102	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	117	125	16	0.128	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.619054801	2	0.9936087	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	178	41	7	0.170731707	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.525772571	2	0.999986	GTT	synonymous	TTA	8	TTATTATT	NA
M5	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	149	10	0	0	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	0.9998529	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	129	5	0	0	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.703856828	2	0.09114802	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M5	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	95	355	47	0.132394366	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.521532469	2	0.9979485	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	115	231	37	0.16017316	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9887474	GAG	synonymous	NA	NA	NA	NA
M5	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	94	1256	87	0.069267516	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.839540072	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5	chr12	8987342	12A2p6	cell line	sgMsh2	8987342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	108	76	12	0.157894737	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon9:c.T947C:p.L316P,Wdr35:NM_172470:exon9:c.T947C:p.L316P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.669936017	2	0.9436959	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	236	82	14	0.170731707	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.589374091	2	0.9999991	CTA	synonymous	NA	NA	NA	NA
M5	chr12	11289146	12A2p6	cell line	sgMsh2	11289146	-	A	Insertion	Strelka2;Vardict	2	0.1111	54	201	0	0	exonic	Smc6	frameshift insertion	"Smc6:NM_001324476:exon10:c.389dupA:p.Y133Vfs*6,Smc6:NM_025695:exon11:c.983dupA:p.Y331Vfs*6"	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.471075263	NA	NA	AGA	frameshift	A	5	AAAAA	1
M5	chr12	13231462	12A2p6	cell line	sgMsh2	13231462	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	279	484	87	0.179752066	exonic	Ddx1	nonsynonymous SNV	Ddx1:NM_134040:exon15:c.C1099A:p.L367M	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999998	AGG	nonsynonymous	CCAGGA	12	CCAGGACCAGGA	NA
M5	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	156	37	7	0.189189189	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.9843444	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	16824617	12A2p6	cell line	sgMsh2	16824617	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	140	95	14	0.147368421	exonic	E2f6	synonymous SNV	E2f6:NM_033270:exon6:c.A699T:p.V233V	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.767458349	1	0.5395371	TAT	synonymous	NA	NA	NA	NA
M5	chr12	17278908	12A2p6	cell line	sgMsh2	17278908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	139	1312	216	0.164634146	exonic	Pdia6	synonymous SNV	Pdia6:NM_027959:exon7:c.T657C:p.A219A	12qA1.1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999658	CTG	synonymous	NA	NA	NA	NA
M5	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	341	75	13	0.173333333	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.674176119	2	0.9999925	TTT	nonsynonymous	T	5	TTTTT	NA
M5	chr12	24581657	12A2p6	cell line	sgMsh2	24581657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	140	6	1	0.166666667	exonic	Grhl1	nonsynonymous SNV	"Grhl1:NM_145890:exon2:c.A362G:p.N121S,Grhl1:NM_001161406:exon4:c.A608G:p.N203S"	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.77169845	1	0.5852248	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	253	155	39	0.251612903	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	1	0.5100149	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	28594759	12A2p6	cell line	sgMsh2	28594759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	198	0	0	NA	exonic	Colec11	synonymous SNV	"Colec11:NM_001313978:exon7:c.T735C:p.D245D,Colec11:NM_027866:exon7:c.T717C:p.D239D"	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.999752	CAT	synonymous	TCC	8	TCCTCCTC	NA
M5	chr12	28746451	12A2p6	cell line	sgMsh2	28746451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	183	77	11	0.142857143	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon2:c.A1081T:p.S361C,Trappc12:NM_001161411:exon2:c.A1081T:p.S361C,Trappc12:NM_001377005:exon2:c.A1081T:p.S361C,Trappc12:NM_001377006:exon2:c.A1081T:p.S361C,Trappc12:NM_001377007:exon2:c.A1081T:p.S361C,Trappc12:NM_178811:exon2:c.A1081T:p.S361C"	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.843780174	1	0.9837183	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr12	29987228	12A2p6	cell line	sgMsh2	29987228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	224	131	11	0.083969466	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon9:c.C1004T:p.S335F	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9998341	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr12	31305879	12A2p6	cell line	sgMsh2	31305879	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.198	139	115	13	0.113043478	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon21:c.C2967A:p.A989A	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.839540072	1	0.9645708	CCT	synonymous	NA	NA	NA	NA
M5	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.152	191	348	4	0.011494253	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.644495409	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr12	31529474	12A2p6	cell line	sgMsh2	31529474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	57	0	0	NA	exonic	Slc26a4	synonymous SNV	Slc26a4:NM_011867:exon16:c.A1788G:p.Q596Q	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.864980681	1	0.9384831	GTT	synonymous	NA	NA	NA	NA
M5	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	157	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.610574598	2	0.9995561	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	372	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.873460883	1	0.9999624	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	288	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	2	0.5422093	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	33958432	12A2p6	cell line	sgMsh2	33958432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	44	0	0	NA	exonic	Twist1	nonsynonymous SNV	Twist1:NM_011658:exon1:c.C455T:p.T152I	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.911621796	1	0.9568904	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	193	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.424010138	2	0.7008772	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr12	38835204	12A2p6	cell line	sgMsh2	38835204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	268	0	0	NA	exonic	Etv1	synonymous SNV	"Etv1:NM_001163154:exon5:c.G570A:p.E190E,Etv1:NM_001347379:exon7:c.G636A:p.E212E,Etv1:NM_007960:exon8:c.G690A:p.E230E"	12qA3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.737777639	2	0.973558	AGT	synonymous	NA	NA	NA	NA
M5	chr12	40725734	12A2p6	cell line	sgMsh2	40725734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	156	109	13	0.119266055	exonic	Dock4	nonsynonymous SNV	Dock4:NM_172803:exon17:c.A1675G:p.T559A	12qB1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.559693382	2	0.9999589	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	228	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.746257842	2	0.0970112	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	195	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9993743	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	213	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9973724	CTG	synonymous	ACCT	8	ACCTACCT	NA
M5	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	89	86	18	0.209302326	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.860740579	1	0.9632001	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	211	201	38	0.189054726	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.610574598	2	0.9999817	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	208	274	46	0.167883212	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.636015206	2	0.9998856	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M5	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	86	112	17	0.151785714	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.9990473	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	53025731	12A2p6	cell line	sgMsh2	53025731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	168	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon9:c.T2881C:p.F961L	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9999512	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	54065900	12A2p6	cell line	sgMsh2	54065900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	195	0	0	NA	exonic	Npas3	nonsynonymous SNV	"Npas3:NM_001370960:exon10:c.A1429G:p.T477A,Npas3:NM_001370963:exon10:c.A1423G:p.T475A,Npas3:NM_001370961:exon11:c.A1519G:p.T507A,Npas3:NM_001370962:exon11:c.A1513G:p.T505A,Npas3:NM_013780:exon11:c.A1513G:p.T505A,Npas3:NM_001370964:exon12:c.A1564G:p.T522A"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.809859363	1	0.09990591	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	181	247	66	0.267206478	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M5	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	205	43	1	0.023255814	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.737777639	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M5	chr12	55257491	12A2p6	cell line	sgMsh2	55257491	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	358	180	1	0.005555556	exonic	Srp54b;Srp54c	frameshift deletion	"Srp54b:NM_001100109:exon14:c.1223delG:p.G409Dfs*12,Srp54c:NM_001100110:exon14:c.1223delG:p.G409Dfs*12,Srp54c:NM_001377038:exon14:c.1223delG:p.G409Dfs*12"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.517292368	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	199	47	9	0.191489362	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	0.9999832	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.133	100	113	0	0	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.563933483	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr12	61840162	12A2p6	cell line	sgMsh2	61840162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	180	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.T735C:p.N245N,Lrfn5:NM_178714:exon3:c.T735C:p.N245N"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.9894336	ATT	synonymous	NA	NA	NA	NA
M5	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	198	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.55545328	2	0.9999985	CTA	synonymous	NA	NA	NA	NA
M5	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	225	24	3	0.125	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.809859363	1	0.09132717	AAG	synonymous	NA	NA	NA	NA
M5	chr12	64967249	12A2p6	cell line	sgMsh2	64967249	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	266	82	15	0.182926829	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.G1273A:p.G425R,Togaram1:NM_177805:exon1:c.G1273A:p.G425R"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	4.32E-08	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	229	91	15	0.164835165	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.792898957	1	0.7493669	CAA	nonsynonymous	T	5	TTTTT	NA
M5	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	152	127	14	0.11023622	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.763218248	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5	chr12	65075798	12A2p6	cell line	sgMsh2	65075798	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	28	0	0	NA	exonic	Fancm	synonymous SNV	Fancm:NM_178912:exon1:c.C93T:p.P31P	12qC1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.9648342	CCG	synonymous	NA	NA	NA	NA
M5	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	175	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.572413686	2	0.9999809	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr12	69183033	12A2p6	cell line	sgMsh2	69183033	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	183	1790	297	0.165921788	exonic	Rpl36al	nonsynonymous SNV	Rpl36al:NM_025589:exon2:c.C104T:p.A35V	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.623294902	2	0.9998019	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	284	110	21	0.190909091	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	124	857	151	0.176196033	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.712337031	2	0.8607185	GGC	synonymous	NA	NA	NA	NA
M5	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	82	117	15	0.128205128	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.440970543	2	0.9403879	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr12	70198513	12A2p6	cell line	sgMsh2	70198513	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	66	0	0	NA	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon12:c.A1435G:p.K479E	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.695376626	2	0.6441184	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	231	979	162	0.165474974	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.860740579	1	0.9975171	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	203	778	149	0.19151671	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.695376626	2	0.9936223	GTA	synonymous	NA	NA	NA	NA
M5	chr12	71317133	12A2p6	cell line	sgMsh2	71317133	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	196	0	0	NA	exonic	Dact1	synonymous SNV	Dact1:NM_001190466:exon4:c.C687A:p.P229P	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.999726	CCT	synonymous	C	5	CCCCC	NA
M5	chr12	72506414	12A2p6	cell line	sgMsh2	72506414	A	-	Deletion	Strelka2;Vardict	2	0.1259	143	0	0	NA	exonic	Lrrc9	frameshift deletion	Lrrc9:NM_001142728:exon30:c.4089delA:p.S1366Vfs*2	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.533828763	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M5	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	212	33	7	0.212121212	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.55545328	2	0.9999995	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M5	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	201	1	0	0	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	0.975223316	1	0.9999967	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr12	74897856	12A2p6	cell line	sgMsh2	74897856	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	128	0	0	NA	exonic	Kcnh5	nonsynonymous SNV	Kcnh5:NM_172805:exon11:c.T2618G:p.L873R	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.9576743	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	190	36	3	0.083333333	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	1	0.8061734	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	249	19	6	0.315789474	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	2.00E-08	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	75966836	12A2p6	cell line	sgMsh2	75966836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	178	33	6	0.181818182	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon48:c.T8800C:p.S2934P	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.644495409	2	0.9991505	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	229	48	0	0	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.792898957	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	120	81	14	0.172839506	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.645139	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	76	51	6	0.117647059	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.9982159	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	168	112	13	0.116071429	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.822579667	1	0.941461	CTC	nonsynonymous	C	5	CCCCC	NA
M5	chr12	76910260	12A2p6	cell line	sgMsh2	76910260	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	102	27	0	0	exonic	Fntb	nonsynonymous SNV	Fntb:NM_145927:exon9:c.G872A:p.R291H	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.589374091	2	0.9942099	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	153	38	2	0.052631579	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9998639	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	131	24	5	0.208333333	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.767458349	1	0.561716	AGA	synonymous	NA	NA	NA	NA
M5	chr12	79266472	12A2p6	cell line	sgMsh2	79266472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	97	14	2	0.142857143	exonic	Zfyve26	stopgain	Zfyve26:NM_001008550:exon22:c.G4425A:p.W1475X	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.77169845	1	0.6716213	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr12	80720723	12A2p6	cell line	sgMsh2	80720723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	100	4	0	0	exonic	Plekhd1	nonsynonymous SNV	Plekhd1:NM_001177503:exon9:c.T884C:p.M295T	12qC3	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.784418754	1	0.7479532	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	243	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.9913117	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	223	1	0	0	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9999604	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	207	27	2	0.074074074	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9999966	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr12	82341775	12A2p6	cell line	sgMsh2	82341775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	201	124	18	0.14516129	exonic	Sipa1l1	synonymous SNV	"Sipa1l1:NM_172579:exon2:c.C774A:p.S258S,Sipa1l1:NM_001167983:exon5:c.C774A:p.S258S"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.665695916	2	0.9989423	CCT	synonymous	NA	NA	NA	NA
M5	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	144	168	24	0.142857143	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.699616727	2	0.9497304	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	258	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr12	83712466	12A2p6	cell line	sgMsh2	83712466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	206	195	26	0.133333333	exonic	Psen1	nonsynonymous SNV	Psen1:NM_001362271:exon4:c.A250G:p.M84V	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999858	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	214	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999913	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr12	85139473	12A2p6	cell line	sgMsh2	85139473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	91	0	0	NA	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364317:exon6:c.T812C:p.L271P,Rps6kl1:NM_001364315:exon7:c.T860C:p.L287P,Rps6kl1:NM_001364316:exon7:c.T830C:p.L277P,Rps6kl1:NM_146244:exon7:c.T860C:p.L287P"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.780178653	1	0.7327943	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	346	93	24	0.258064516	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.733537538	2	0.9961913	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	86058904	12A2p6	cell line	sgMsh2	86058904	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	109	3	0	0	exonic	Tgfb3	nonsynonymous SNV	Tgfb3:NM_009368:exon6:c.G1076A:p.S359N	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.669936017	2	0.9458087	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr12	86687000	12A2p6	cell line	sgMsh2	86687000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	169	4	0	0	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon3:c.A463G:p.K155E	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9993295	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	70	137	27	0.197080292	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.737777639	1	0.5512017	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	87279780	12A2p6	cell line	sgMsh2	87279780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	119	0	0	NA	exonic	Ism2	nonsynonymous SNV	Ism2:NM_001290302:exon6:c.T1384C:p.Y462H	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.6410252	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	98	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.763218248	1	0.6098783	CTT	synonymous	NA	NA	NA	NA
M5	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	94	41	8	0.195121951	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.589374091	2	0.9902426	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	82	30	2	0.066666667	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.351928414	3	9.90E-06	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	291	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9999923	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	176	29	5	0.172413793	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.674176119	2	0.9952188	ATG	synonymous	NA	NA	NA	NA
M5	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	185	63	15	0.238095238	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.521532469	2	0.9999851	TGA	synonymous	NA	NA	NA	NA
M5	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	113	31	4	0.129032258	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.848020275	1	0.9636139	TAG	synonymous	NA	NA	NA	NA
M5	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	72	8	0	0	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.9977075	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	119	19	0	0	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.725057335	2	0.7705589	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	75	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.911621796	1	0.9850769	AAC	synonymous	NA	NA	NA	NA
M5	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	102	19	8	0.421052632	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.610574598	2	0.9886911	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.146	286	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.619054801	NA	NA	CCA	frameshift	NA	NA	NA	1
M5	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.148	113	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.627535004	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M5	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	124	131	21	0.160305344	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	0.975223316	1	0.9997708	TTC	synonymous	NA	NA	NA	NA
M5	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	65	76	13	0.171052632	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	0.992183722	1	0.9958359	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr12	102558495	12A2p6	cell line	sgMsh2	102558495	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.154	61	0	0	NA	exonic	Chga	synonymous SNV	Chga:NM_007693:exon3:c.C123A:p.S41S	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.7755677	CCG	synonymous	NA	NA	NA	NA
M5	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.195	259	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.826819768	1	0.9777913	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	261	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.525772571	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr12	103333457	12A2p6	cell line	sgMsh2	103333457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	41	0	0	NA	exonic	Asb2	nonsynonymous SNV	"Asb2:NM_001374764:exon4:c.T571C:p.W191R,Asb2:NM_023049:exon6:c.T715C:p.W239R"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.822579667	1	0.8643518	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	180	210	42	0.2	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.572413686	2	0.9999866	GAG	synonymous	NA	NA	NA	NA
M5	chr12	103997113	12A2p6	cell line	sgMsh2	103997113	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	120	0	0	NA	exonic	Serpina9	nonsynonymous SNV	"Serpina9:NM_001361910:exon5:c.C1135T:p.R379C,Serpina9:NM_001361912:exon5:c.C1135T:p.R379C,Serpina9:NM_027997:exon5:c.C1135T:p.R379C"	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.937062404	1	0.9988037	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr12	104714802	12A2p6	cell line	sgMsh2	104714802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	157	49	9	0.183673469	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon9:c.T1451C:p.M484T	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.415529935	2	0.6137388	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.188	114	78	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	NA	NA	TGT	frameshift	T	5	TTTTT	1
M5	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	148	1	0	0	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.623294902	2	0.9986397	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	108537424	12A2p6	cell line	sgMsh2	108537424	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	120	104	22	0.211538462	exonic	Eml1	nonsynonymous SNV	"Eml1:NM_001364199:exon18:c.G1718A:p.G573D,Eml1:NM_001364198:exon19:c.G1733A:p.G578D,Eml1:NM_001043335:exon21:c.G2279A:p.G760D,Eml1:NM_001043336:exon21:c.G2186A:p.G729D,Eml1:NM_001286346:exon21:c.G2240A:p.G747D,Eml1:NM_001364195:exon21:c.G2270A:p.G757D,Eml1:NM_001286347:exon22:c.G2237A:p.G746D,Eml1:NM_001364194:exon22:c.G2330A:p.G777D,Eml1:NM_001364196:exon22:c.G2237A:p.G746D,Eml1:NM_001364197:exon22:c.G2186A:p.G729D,Eml1:NM_001364193:exon23:c.G2372A:p.G791D"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.809859363	1	0.875458	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	99	9	3	0.333333333	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9945624	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	99	8	3	0.375	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9945624	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	110794091	12A2p6	cell line	sgMsh2	110794091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	462	94	12	0.127659574	exonic	Wdr20	nonsynonymous SNV	"Wdr20:NM_001364273:exon3:c.G987T:p.K329N,Wdr20:NM_027149:exon3:c.G1410T:p.K470N,Wdr20:NM_001364272:exon4:c.G1290T:p.K430N"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr12	110815131	12A2p6	cell line	sgMsh2	110815131	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	144	7	1	0.142857143	exonic	Mok	nonsynonymous SNV	Mok:NM_011973:exon5:c.G362T:p.R121I	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	1	1	0.999975	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr12	110828057	12A2p6	cell line	sgMsh2	110828057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	234	5	0	0	exonic	Mok	nonsynonymous SNV	Mok:NM_011973:exon3:c.C196A:p.L66M	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.67841622	2	0.9993241	AGT	nonsynonymous	GTGCA	10	GTGCAGTGCA	NA
M5	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	79	16	4	0.25	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.746257842	1	0.5601923	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr12	111097527	12A2p6	cell line	sgMsh2	111097527	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	265	133	23	0.172932331	exonic	Rcor1	nonsynonymous SNV	Rcor1:NM_198023:exon5:c.T553A:p.F185I	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.9997025	CTT	nonsynonymous	C	5	CCCCC	NA
M5	chr12	111345605	12A2p6	cell line	sgMsh2	111345605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	79	110	16	0.145454545	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon2:c.T194C:p.L65P	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.792898957	1	0.8014064	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	111429503	12A2p6	cell line	sgMsh2	111429503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	89	74	5	0.067567568	exonic	Exoc3l4	nonsynonymous SNV	"Exoc3l4:NM_001289489:exon12:c.T1949C:p.L650P,Exoc3l4:NM_028807:exon12:c.T1949C:p.L650P,Exoc3l4:NM_001289487:exon13:c.T1949C:p.L650P,Exoc3l4:NM_001289488:exon13:c.T1949C:p.L650P"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.767458349	1	0.6607184	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	111629000	12A2p6	cell line	sgMsh2	111629000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	154	194	26	0.134020619	exonic	Mark3	synonymous SNV	"Mark3:NM_001370745:exon10:c.A702G:p.S234S,Mark3:NM_001370744:exon12:c.A1149G:p.S383S,Mark3:NM_021516:exon12:c.A1149G:p.S383S,Mark3:NM_022801:exon12:c.A1149G:p.S383S"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.974899	CAC	synonymous	NA	NA	NA	NA
M5	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	117	22	1	0.045454545	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.911621796	1	0.9965516	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	113	34	10	0.294117647	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.733537538	2	0.6839923	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	86	58	9	0.155172414	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.7112226	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	96	143	17	0.118881119	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.623294902	2	0.9766706	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	148	45	9	0.2	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.67841622	2	0.9828006	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	179	49	9	0.183673469	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.720817234	2	0.9449491	AGT	synonymous	NA	NA	NA	NA
M5	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	283	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.699616727	2	0.9993076	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	188	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.915861897	1	0.9997779	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	202	242	36	0.148760331	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.788658856	1	0.7070626	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	187	269	4	0.014869888	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.890421289	1	0.9989797	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M5	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	125	9	2	0.222222222	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.517292368	2	0.9996334	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.129	207	12	0	0	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.546973077	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	133	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9894085	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	317	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.9841499	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr12	118140689	12A2p6	cell line	sgMsh2	118140689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	191	0	0	NA	exonic	Dnah11	synonymous SNV	Dnah11:NM_010060:exon12:c.T1998C:p.S666S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	2	0.958262911	1	0.9999842	GAC	synonymous	NA	NA	NA	NA
M5	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	146	2	1	0.5	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.606334497	2	0.9992998	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr12	119190648	12A2p6	cell line	sgMsh2	119190648	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	132	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon5:c.G653A:p.C218Y	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.636015206	2	0.9944694	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr12	119208553	12A2p6	cell line	sgMsh2	119208553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	236	2	0	0	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon2:c.A179G:p.Q60R	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999978	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	232	6	0	0	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.99	4.197700362	NA	1	0.797139059	1	0.8017242	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr13	4143255	12A2p6	cell line	sgMsh2	4143255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	264	0	0	NA	exonic	Akr1c18	nonsynonymous SNV	Akr1c18:NM_134066:exon4:c.T410C:p.L137S	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	2	1	1	1.43E-08	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr13	13508777	12A2p6	cell line	sgMsh2	13508777	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	141	174	42	0.24137931	exonic	Nid1	nonsynonymous SNV	Nid1:NM_010917:exon18:c.G3439T:p.G1147W	13qA1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999382	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr13	18862594	12A2p6	cell line	sgMsh2	18862594	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	156	82	1	0.012195122	exonic	Vps41	frameshift deletion	Vps41:NM_172120:exon26:c.2314delA:p.M774Cfs*4	13qA2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	163	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999924	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr13	21754253	12A2p6	cell line	sgMsh2	21754253	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	134	9	3	0.333333333	exonic	H2bc15	nonsynonymous SNV	H2bc15:NM_178201:exon1:c.A131G:p.K44R	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	368	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9999978	GGC	synonymous	NA	NA	NA	NA
M5	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.6930969	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr13	22524076	12A2p6	cell line	sgMsh2	22524076	A	-	Deletion	Strelka2;Vardict	2	0.2674	258	0	0	NA	exonic	Vmn1r203	frameshift deletion	Vmn1r203:NM_134236:exon1:c.26delA:p.M11Wfs*2	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	AGGA	9	AGGAAGGAA	-1
M5	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	237	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr13	22827474	12A2p6	cell line	sgMsh2	22827474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	423	0	0	NA	exonic	Vmn1r210	nonsynonymous SNV	Vmn1r210:NM_134235:exon1:c.A641G:p.Y214C	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr13	24022624	12A2p6	cell line	sgMsh2	24022624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	87	27	5	0.185185185	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon36:c.A3851G:p.D1284G,Carmil1:NM_001384122:exon36:c.A3851G:p.D1284G,Carmil1:NM_026825:exon37:c.A3863G:p.D1288G"	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9937784	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	91	400	100	0.25	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	GCA	synonymous	NA	NA	NA	NA
M5	chr13	24831893	12A2p6	cell line	sgMsh2	24831893	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	27	35	3	0.085714286	exonic	Tdp2	frameshift deletion	Tdp2:NM_019551:exon1:c.162delC:p.S56Afs*13	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5	chr13	27270182	12A2p6	cell line	sgMsh2	27270182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	180	0	0	NA	exonic	Prl3a1	nonsynonymous SNV	Prl3a1:NM_025896:exon2:c.T142C:p.F48L	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.619054801	2	0.9998159	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr13	27776275	12A2p6	cell line	sgMsh2	27776275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	135	0	0	NA	exonic	Prl7c1	nonsynonymous SNV	"Prl7c1:NM_001368392:exon3:c.A244G:p.I82V,Prl7c1:NM_026206:exon4:c.A283G:p.I95V"	13qA3.1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999561	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	17	38	12	0.315789474	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	2	1	1	0.9321778	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	61	65	15	0.230769231	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9430633	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	38510225	12A2p6	cell line	sgMsh2	38510225	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	62	236	51	0.216101695	exonic	Txndc5	nonsynonymous SNV	"Txndc5:NM_001289598:exon5:c.T310G:p.F104V,Txndc5:NM_001289599:exon5:c.T373G:p.F125V,Txndc5:NM_145367:exon5:c.T592G:p.F198V"	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9867273	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr13	44914803	12A2p6	cell line	sgMsh2	44914803	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	27	9	5	0.555555556	exonic	Jarid2	synonymous SNV	"Jarid2:NM_001360281:exon15:c.T2784C:p.A928A,Jarid2:NM_001205043:exon16:c.T3300C:p.A1100A,Jarid2:NM_001205044:exon17:c.T3300C:p.A1100A,Jarid2:NM_021878:exon17:c.T3300C:p.A1100A"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	2	1	1	0.9626395	CTG	synonymous	NA	NA	NA	NA
M5	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	147	53	13	0.245283019	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	145	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	75	0	0	NA	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	GTA	synonymous	NA	NA	NA	NA
M5	chr13	49662355	12A2p6	cell line	sgMsh2	49662355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	185	90	25	0.277777778	exonic	Nol8	synonymous SNV	Nol8:NM_001271397:exon7:c.T1938C:p.C646C	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999962	GTA	synonymous	NA	NA	NA	NA
M5	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	162	19	6	0.315789474	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999919	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	92	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr13	50475010	12A2p6	cell line	sgMsh2	50475010	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	71	0	0	NA	exonic	Nutm2	synonymous SNV	Nutm2:NM_001033400:exon7:c.C2109A:p.L703L	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	2	1	1	0.9975592	TCT	synonymous	NA	NA	NA	NA
M5	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	33	18	3	0.166666667	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	AAG	synonymous	NA	NA	NA	NA
M5	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	61	2	1	0.5	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M5	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	91	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.805619261	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	143	51	5	0.098039216	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.8110619	AAC	synonymous	NA	NA	NA	NA
M5	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	112	26	5	0.192307692	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8725431	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	229	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr13	61000538	12A2p6	cell line	sgMsh2	61000538	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	146	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon8:c.C944T:p.A315V,Ctsj:NM_012007:exon8:c.C941T:p.A314V"	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr13	61003076	12A2p6	cell line	sgMsh2	61003076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	88	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T569C:p.V190A,Ctsj:NM_012007:exon5:c.T566C:p.V189A"	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.733537538	2	0.5640834	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	61159526	12A2p6	cell line	sgMsh2	61159526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	160	0	0	NA	exonic	Ctsr	stopgain	Ctsr:NM_020284:exon8:c.A955T:p.K319X	13qB2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999909	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	73	4	3	0.75	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9879921	CTA	synonymous	NA	NA	NA	NA
M5	chr13	64312589	12A2p6	cell line	sgMsh2	64312589	G	T	SNV	Mutect2;MuSe;Vardict	3	0.3	8	31	9	0.290322581	exonic	Prxl2c	synonymous SNV	Prxl2c:NM_025370:exon1:c.C96A:p.A32A	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.8860264	CGG	synonymous	NA	NA	NA	NA
M5	chr13	67442555	12A2p6	cell line	sgMsh2	67442555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	219	22	2	0.090909091	exonic	Zfp874a	stopgain	Zfp874a:NM_177712:exon4:c.G1009T:p.E337X	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9999988	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	169	42	5	0.119047619	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.920101999	NA	NA	TAG	frameshift	NA	NA	NA	-1
M5	chr13	68584570	12A2p6	cell line	sgMsh2	68584570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	115	37	12	0.324324324	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.A1009G:p.K337E,Fastkd3:NM_027123:exon2:c.A1009G:p.K337E"	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9996239	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr13	68678525	12A2p6	cell line	sgMsh2	68678525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	117	0	0	NA	exonic	Adcy2	nonsynonymous SNV	Adcy2:NM_153534:exon16:c.A2059G:p.T687A	13qB3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	72	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8570839	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	29	3	2	0.666666667	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9669045	GAG	synonymous	NA	NA	NA	NA
M5	chr13	74737623	12A2p6	cell line	sgMsh2	74737623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	105	131	28	0.213740458	exonic	Cast	synonymous SNV	"Cast:NM_001301156:exon10:c.T573C:p.N191N,Cast:NM_001301157:exon10:c.T573C:p.N191N,Cast:NM_001301155:exon11:c.T630C:p.N210N,Cast:NM_009817:exon12:c.T777C:p.N259N,Cast:NM_001301153:exon13:c.T879C:p.N293N"	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	CAT	synonymous	T	5	TTTTT	NA
M5	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	139	90	28	0.311111111	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr13	76129467	12A2p6	cell line	sgMsh2	76129467	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	131	85	29	0.341176471	exonic	Ttc37	synonymous SNV	Ttc37:NM_001081352:exon18:c.T1560G:p.A520A	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8596836	CTT	synonymous	NA	NA	NA	NA
M5	chr13	77183741	12A2p6	cell line	sgMsh2	77183741	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	61	6	2	0.333333333	exonic	2210408I21Rik	nonsynonymous SNV	"2210408I21Rik:NM_001081353:exon3:c.G272A:p.G91E,2210408I21Rik:NM_001145676:exon3:c.G272A:p.G91E"	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr13	77267679	12A2p6	cell line	sgMsh2	77267679	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	99	2	1	0.5	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon10:c.C1890T:p.F630F	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	TCG	synonymous	NA	NA	NA	NA
M5	chr13	77316362	12A2p6	cell line	sgMsh2	77316362	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	67	0	0	NA	exonic	2210408I21Rik	stopgain	2210408I21Rik:NM_001145676:exon15:c.G2677T:p.E893X	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.7599435	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr13	77316514	12A2p6	cell line	sgMsh2	77316514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	79	2	1	0.5	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon15:c.C2829T:p.S943S	13qC1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	GCA	synonymous	NA	NA	NA	NA
M5	chr13	81419685	12A2p6	cell line	sgMsh2	81419685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	193	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon74:c.A15368T:p.D5123V	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	GTC	nonsynonymous	AGTCA	10	AGTCAAGTCA	NA
M5	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	114	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	59	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.993546	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr13	83625321	12A2p6	cell line	sgMsh2	83625321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	105	0	0	NA	exonic	Mef2c	synonymous SNV	"Mef2c:NM_001347566:exon4:c.T315C:p.D105D,Mef2c:NM_001347567:exon4:c.T315C:p.D105D,Mef2c:NM_001347573:exon4:c.T315C:p.D105D,Mef2c:NM_001347574:exon4:c.T315C:p.D105D,Mef2c:NM_001347575:exon4:c.T315C:p.D105D,Mef2c:NM_001347576:exon4:c.T315C:p.D105D,Mef2c:NM_001347577:exon4:c.T315C:p.D105D,Mef2c:NM_001347578:exon4:c.T315C:p.D105D,Mef2c:NM_001347579:exon4:c.T315C:p.D105D,Mef2c:NM_001347580:exon4:c.T315C:p.D105D,Mef2c:NM_001347581:exon4:c.T315C:p.D105D,Mef2c:NM_001170537:exon5:c.T315C:p.D105D,Mef2c:NM_001347564:exon5:c.T315C:p.D105D,Mef2c:NM_001347571:exon5:c.T315C:p.D105D,Mef2c:NM_001347572:exon5:c.T315C:p.D105D"	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	ATT	synonymous	NA	NA	NA	NA
M5	chr13	85225580	12A2p6	cell line	sgMsh2	85225580	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	206	116	27	0.232758621	exonic	Rasa1	nonsynonymous SNV	Rasa1:NM_145452:exon18:c.T2362G:p.L788V	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	85256444	12A2p6	cell line	sgMsh2	85256444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	73	163	41	0.251533742	exonic	Rasa1	synonymous SNV	Rasa1:NM_145452:exon3:c.T696C:p.I232I	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.737777639	1	0.5368772	CAA	synonymous	NA	NA	NA	NA
M5	chr13	89712395	12A2p6	cell line	sgMsh2	89712395	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	51	14	2	0.142857143	exonic	Vcan	nonsynonymous SNV	"Vcan:NM_001081249:exon6:c.G852T:p.Q284H,Vcan:NM_001134474:exon6:c.G852T:p.Q284H,Vcan:NM_001134475:exon6:c.G852T:p.Q284H,Vcan:NM_019389:exon6:c.G852T:p.Q284H,Vcan:NM_172955:exon6:c.G852T:p.Q284H"	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.83105987	1	9.05E-08	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	215	23	4	0.173913043	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CTT	synonymous	NA	NA	NA	NA
M5	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	72	36	7	0.194444444	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	95700896	12A2p6	cell line	sgMsh2	95700896	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	234	0	0	NA	exonic	F2rl2	nonsynonymous SNV	F2rl2:NM_010170:exon2:c.G448A:p.A150T	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	120	94	15	0.159574468	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9996073	ATT	synonymous	NA	NA	NA	NA
M5	chr13	100060821	12A2p6	cell line	sgMsh2	100060821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	104	89	28	0.314606742	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A3055G:p.T1019A	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7444282	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr13	100803455	12A2p6	cell line	sgMsh2	100803455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	83	146	31	0.212328767	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.G2122T:p.G708W	13qD1	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.847811	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	105	94	28	0.29787234	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9908714	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr13	113616984	12A2p6	cell line	sgMsh2	113616984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	38	43	15	0.348837209	exonic	Snx18	nonsynonymous SNV	Snx18:NM_130796:exon1:c.T1412C:p.L471P	13qD2.2	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9809238	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	160	10	2	0.2	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999909	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	125	14	5	0.357142857	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9994134	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr13	119455737	12A2p6	cell line	sgMsh2	119455737	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	88	420	67	0.15952381	exonic	Paip1	frameshift deletion	"Paip1:NM_001079849:exon10:c.958delT:p.P322Qfs*87,Paip1:NM_145457:exon10:c.1057delT:p.P355Qfs*87"	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr13	119484468	12A2p6	cell line	sgMsh2	119484468	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	132	57	12	0.210526316	exonic	4833420G17Rik	nonsynonymous SNV	"4833420G17Rik:NM_001113550:exon12:c.G1704T:p.E568D,4833420G17Rik:NM_001360805:exon12:c.G1704T:p.E568D,4833420G17Rik:NM_026127:exon13:c.G1704T:p.E568D"	13qD2.3	chr13-3556297-119495179	4	2	2	0.99	4.197700362	NA	1	0.775938552	1	0.6430202	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	3225359	12A2p6	cell line	sgMsh2	3225359	G	-	Deletion	Strelka2;Vardict	2	0.0415	289	0	0	NA	exonic	D830030K20Rik	frameshift deletion	"D830030K20Rik:NM_001320366:exon2:c.45delG:p.E16Nfs*7,D830030K20Rik:NM_177135:exon2:c.45delG:p.E16Nfs*7"	14qA1	chr14-3072210-6875339	1.74068474	1.74068474	0	0.99	4.197700362	NA	1	0.175964207	NA	NA	TGG	frameshift	NA	NA	NA	-1
M5	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	154	784	205	0.261479592	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9982635	CCT	synonymous	NA	NA	NA	NA
M5	chr14	8253530	12A2p6	cell line	sgMsh2	8253530	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	61	5	0	0	exonic	Acox2	nonsynonymous SNV	"Acox2:NM_001161667:exon6:c.G616T:p.A206S,Acox2:NM_053115:exon6:c.G616T:p.A206S"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	3	0	0	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	CAG	synonymous	NA	NA	NA	NA
M5	chr14	12121999	12A2p6	cell line	sgMsh2	12121999	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	74	26	4	0.153846154	exonic	Ptprg	nonsynonymous SNV	Ptprg:NM_008981:exon8:c.T862A:p.F288I	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9895168	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	12373661	12A2p6	cell line	sgMsh2	12373661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	131	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001359920:exon29:c.G3991T:p.G1331C,Cadps:NM_012061:exon29:c.G4039T:p.G1347C,Cadps:NM_001359921:exon30:c.G3931T:p.G1311C,Cadps:NM_001042617:exon31:c.G4021T:p.G1341C,Cadps:NM_001359919:exon31:c.G4009T:p.G1337C"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	72	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	95	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9983507	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr14	14175138	12A2p6	cell line	sgMsh2	14175138	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	52	0	0	NA	exonic	Olfr720	synonymous SNV	Olfr720:NM_146392:exon1:c.A943C:p.R315R	14qA1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.530012672	2	0.94024	CTT	synonymous	TTTC	8	TTTCTTTC	NA
M5	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	72	75	12	0.16	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	TTA	synonymous	NA	NA	NA	NA
M5	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	96	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.99893	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	20420715	12A2p6	cell line	sgMsh2	20420715	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	119	0	0	NA	exonic	Cfap70	synonymous SNV	"Cfap70:NM_001163638:exon14:c.A1461T:p.I487I,Cfap70:NM_001163639:exon15:c.A1629T:p.I543I,Cfap70:NM_029698:exon15:c.A1629T:p.I543I"	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9548769	CTA	synonymous	NA	NA	NA	NA
M5	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	150	9	2	0.222222222	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9992721	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.447	62	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	60	24	6	0.25	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9951408	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	25662959	12A2p6	cell line	sgMsh2	25662959	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	148	67	17	0.253731343	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon24:c.A3113C:p.N1038T,Zmiz1:NM_183208:exon24:c.A3131C:p.N1044T"	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.9328892	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	169	305	86	0.281967213	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999528	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	135	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9993731	GAA	nonsynonymous	A	5	AAAAA	NA
M5	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	167	47	11	0.234042553	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.754738045	2	0.6846662	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	45	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	70	1429	311	0.21763471	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	1	0.9974014	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	77	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9540855	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr14	30921912	12A2p6	cell line	sgMsh2	30921912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	94	0	0	NA	exonic	Itih3	nonsynonymous SNV	Itih3:NM_008407:exon3:c.A239G:p.D80G	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994234	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	93	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.865386	CAA	synonymous	NA	NA	NA	NA
M5	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	167	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr14	30940878	12A2p6	cell line	sgMsh2	30940878	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.148	176	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon6:c.G684A:p.G228G,Itih1:NM_008406:exon6:c.G672A:p.G224G"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.627535004	2	0.9996321	TCC	synonymous	T	5	TTTTT	NA
M5	chr14	31010148	12A2p6	cell line	sgMsh2	31010148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	62	33	11	0.333333333	exonic	Glt8d1	nonsynonymous SNV	"Glt8d1:NM_001165930:exon6:c.A515G:p.D172G,Glt8d1:NM_029626:exon6:c.A515G:p.D172G"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	GAT	nonsynonymous	GAT	10	GATGATGATG	NA
M5	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	118	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	88	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	AGC	synonymous	NA	NA	NA	NA
M5	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	95	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9798545	CAG	synonymous	NA	NA	NA	NA
M5	chr14	32102327	12A2p6	cell line	sgMsh2	32102327	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	92	115	29	0.252173913	exonic	Oxnad1	synonymous SNV	Oxnad1:NM_145460:exon8:c.A852T:p.P284P	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CAC	synonymous	NA	NA	NA	NA
M5	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	69	25	1	0.04	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	61	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	1	0.9954353	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.2963	27	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5	chr14	33393091	12A2p6	cell line	sgMsh2	33393091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	93	67	16	0.23880597	exonic	Mapk8	nonsynonymous SNV	"Mapk8:NM_001310452:exon5:c.A467G:p.N156S,Mapk8:NM_001310453:exon6:c.A467G:p.N156S,Mapk8:NM_001310454:exon6:c.A467G:p.N156S,Mapk8:NM_016700:exon6:c.A467G:p.N156S"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr14	34434451	12A2p6	cell line	sgMsh2	34434451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	145	116	33	0.284482759	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon7:c.G458T:p.W153L	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999405	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	85	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989856	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	66	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9813114	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	132	37	4	0.108108108	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.720817234	2	0.8440451	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	163	33	8	0.242424242	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.99264	GAC	synonymous	NA	NA	NA	NA
M5	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	70	11	3	0.272727273	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	47268738	12A2p6	cell line	sgMsh2	47268738	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	127	40	11	0.275	exonic	Wdhd1	nonsynonymous SNV	"Wdhd1:NM_001360532:exon8:c.C718T:p.P240S,Wdhd1:NM_172598:exon8:c.C718T:p.P240S"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	0.8880957	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr14	47529305	12A2p6	cell line	sgMsh2	47529305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	169	68	23	0.338235294	exonic	Fbxo34	nonsynonymous SNV	"Fbxo34:NM_030236:exon2:c.A274G:p.S92G,Fbxo34:NM_001146086:exon3:c.A121G:p.S41G,Fbxo34:NM_001146085:exon4:c.A121G:p.S41G"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9989114	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	114	22	7	0.318181818	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.573	43	4	1	0.25	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M5	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	266	56	19	0.339285714	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	1.27E-08	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr14	49773243	12A2p6	cell line	sgMsh2	49773243	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	71	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon2:c.C1006T:p.P336S,Armh4:NM_026142:exon2:c.C1006T:p.P336S"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9331381	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	50299113	12A2p6	cell line	sgMsh2	50299113	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	181	0	0	NA	exonic	Olfr733	nonsynonymous SNV	Olfr733:NM_146663:exon1:c.T195G:p.N65K	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999976	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	109	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9977807	TAA	synonymous	NA	NA	NA	NA
M5	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	298	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	192	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999967	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	73	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9954079	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	98	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	CGT	synonymous	NA	NA	NA	NA
M5	chr14	50893051	12A2p6	cell line	sgMsh2	50893051	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	0	0	NA	exonic	Klhl33	nonsynonymous SNV	"Klhl33:NM_001166651:exon1:c.A205C:p.S69R,Klhl33:NM_001370764:exon2:c.A985C:p.S329R"	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	32	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	1	0.9724323	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	75	157	26	0.165605096	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	1	0.9981005	TAG	synonymous	NA	NA	NA	NA
M5	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	126	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999227	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	131	440	94	0.213636364	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M5	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	61	144	5	0.034722222	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr14	52298743	12A2p6	cell line	sgMsh2	52298743	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	116	63	19	0.301587302	exonic	Mettl3	nonsynonymous SNV	Mettl3:NM_019721:exon4:c.T796G:p.S266A	14qC2	chr14-7006943-52779282	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998552	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	74	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	2	1	1	0.9979776	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	75	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8699741	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	25	3	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	2	1	1	0.9578486	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	1	0	0	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9196535	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	60	24	8	0.333333333	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9909645	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	141	300	61	0.203333333	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999647	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	55718523	12A2p6	cell line	sgMsh2	55718523	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	81	96	26	0.270833333	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.C1276T:p.R426C,Rabggta:NM_001360387:exon14:c.C1276T:p.R426C,Rabggta:NM_001360388:exon14:c.C1276T:p.R426C"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	50	51	14	0.274509804	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.64873551	2	0.6904955	AAC	synonymous	NA	NA	NA	NA
M5	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	50	45	12	0.266666667	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	56	18	7	0.388888889	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	CTT	synonymous	NA	NA	NA	NA
M5	chr14	56043442	12A2p6	cell line	sgMsh2	56043442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	10	0	0	exonic	Mcpt2	nonsynonymous SNV	Mcpt2:NM_008571:exon3:c.T286C:p.F96L	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9943723	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	105	78	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	182	17	4	0.235294118	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999977	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr14	57597104	12A2p6	cell line	sgMsh2	57597104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	53	79	12	0.151898734	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.A2018G:p.E673G,Xpo4:NM_001368697:exon16:c.A1796G:p.E599G"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9828648	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr14	57890141	12A2p6	cell line	sgMsh2	57890141	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	43	64	8	0.125	exonic	Zdhhc20	nonsynonymous SNV	"Zdhhc20:NM_001360097:exon1:c.G40A:p.V14M,Zdhhc20:NM_001360098:exon1:c.G40A:p.V14M,Zdhhc20:NM_029492:exon1:c.G40A:p.V14M"	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	2	1	1	0.9859936	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	169	149	1	0.006711409	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr14	61205151	12A2p6	cell line	sgMsh2	61205151	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	171	13	6	0.461538462	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4645G:p.R1549G	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999954	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	206	15	4	0.266666667	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999995	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M5	chr14	62606644	12A2p6	cell line	sgMsh2	62606644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	72	0	0	NA	exonic	Fam124a	nonsynonymous SNV	Fam124a:NM_001243857:exon4:c.T1600C:p.F534L	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8570839	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	64896965	12A2p6	cell line	sgMsh2	64896965	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	178	54	15	0.277777778	exonic	Hmbox1	nonsynonymous SNV	"Hmbox1:NM_001347626:exon3:c.G185A:p.G62E,Hmbox1:NM_001347627:exon3:c.G185A:p.G62E,Hmbox1:NM_177338:exon3:c.G185A:p.G62E"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999971	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr14	65565467	12A2p6	cell line	sgMsh2	65565467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	132	34	0.257575758	exonic	Elp3	synonymous SNV	"Elp3:NM_001253812:exon8:c.T681C:p.S227S,Elp3:NM_028811:exon8:c.T624C:p.S208S"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9653008	CAG	synonymous	NA	NA	NA	NA
M5	chr14	65826534	12A2p6	cell line	sgMsh2	65826534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	147	112	29	0.258928571	exonic	Esco2	synonymous SNV	Esco2:NM_028039:exon7:c.C1200T:p.D400D	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	CGT	synonymous	NA	NA	NA	NA
M5	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	119	17302	4403	0.254479251	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9997799	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	65	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M5	chr14	66158534	12A2p6	cell line	sgMsh2	66158534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	88	72	13	0.180555556	exonic	Ptk2b	synonymous SNV	"Ptk2b:NM_172498:exon24:c.C2358T:p.C786C,Ptk2b:NM_001162365:exon25:c.C2484T:p.C828C,Ptk2b:NM_001162366:exon25:c.C2484T:p.C828C,Ptk2b:NM_001360233:exon25:c.C2484T:p.C828C"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	AGC	synonymous	NA	NA	NA	NA
M5	chr14	66175190	12A2p6	cell line	sgMsh2	66175190	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	88	61	14	0.229508197	exonic	Ptk2b	synonymous SNV	"Ptk2b:NM_001162365:exon12:c.G1128A:p.L376L,Ptk2b:NM_001162366:exon12:c.G1128A:p.L376L,Ptk2b:NM_001360233:exon12:c.G1128A:p.L376L,Ptk2b:NM_172498:exon12:c.G1128A:p.L376L"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	GCA	synonymous	AGGC	8	AGGCAGGC	NA
M5	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	169	59	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.9243421	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	215	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CGG	synonymous	NA	NA	NA	NA
M5	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	69	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	102	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	TAT	synonymous	NA	NA	NA	NA
M5	chr14	72567427	12A2p6	cell line	sgMsh2	72567427	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.276	97	96	27	0.28125	exonic	Fndc3a	synonymous SNV	Fndc3a:NM_207636:exon13:c.A1413C:p.A471A	14qD2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	TTG	synonymous	NA	NA	NA	NA
M5	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	68	39	8	0.205128205	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9954474	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	162	1	1	1	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999919	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	179	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999972	CAG	synonymous	NA	NA	NA	NA
M5	chr14	77582493	12A2p6	cell line	sgMsh2	77582493	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Enox1	nonsynonymous SNV	"Enox1:NM_001253759:exon10:c.A687C:p.E229D,Enox1:NM_172813:exon10:c.A687C:p.E229D"	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	79466334	12A2p6	cell line	sgMsh2	79466334	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	70	162	31	0.191358025	exonic	Wbp4	nonsynonymous SNV	Wbp4:NM_018765:exon9:c.A772G:p.T258A	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.983808	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	84	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9971107	GTT	synonymous	NA	NA	NA	NA
M5	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	82	37	14	0.378378378	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9985039	ATG	synonymous	NA	NA	NA	NA
M5	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	134	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	73	26	7	0.269230769	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	240	73	15	0.205479452	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999993	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	90	1	0	0	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.6849525	GCC	synonymous	NA	NA	NA	NA
M5	chr14	104479438	12A2p6	cell line	sgMsh2	104479438	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	41	11	0.268292683	exonic	Obi1	stopgain	Obi1:NM_026047:exon6:c.G1498T:p.G500X	14qE2.3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.9576978	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	107	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9653429	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	108911712	12A2p6	cell line	sgMsh2	108911712	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	99	0	0	NA	exonic	Slitrk1	synonymous SNV	Slitrk1:NM_199065:exon1:c.C1566T:p.I522I	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	GGA	synonymous	NA	NA	NA	NA
M5	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	62	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9558317	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr14	110750419	12A2p6	cell line	sgMsh2	110750419	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	145	0	0	NA	exonic	Slitrk6	frameshift deletion	Slitrk6:NM_175499:exon2:c.1855delA:p.T619Lfs*24	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr14	110751496	12A2p6	cell line	sgMsh2	110751496	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	151	0	0	NA	exonic	Slitrk6	nonsynonymous SNV	Slitrk6:NM_175499:exon2:c.C778A:p.R260S	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.178084258	3	3.64E-09	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	120	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998873	AAG	synonymous	NA	NA	NA	NA
M5	chr14	118235594	12A2p6	cell line	sgMsh2	118235594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	36	2	0	0	exonic	Sox21	synonymous SNV	Sox21:NM_177753:exon1:c.C42A:p.A14A	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	2	1	1	0.9784253	AGG	synonymous	NA	NA	NA	NA
M5	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	152	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999849	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	31	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	9.91E-08	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	119007321	12A2p6	cell line	sgMsh2	119007321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	78	14	1	0.071428571	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon34:c.A3796G:p.I1266V	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.188	92	10	1	0.1	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.8162588	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr14	121238629	12A2p6	cell line	sgMsh2	121238629	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	107	18	0.168224299	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon10:c.G857T:p.S286I	14qE5	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9763314	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	294	428	90	0.210280374	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	112	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	237	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	126	11	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999227	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M5	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	75	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	ATG	synonymous	A	5	AAAAA	NA
M5	chr15	4947253	12A2p6	cell line	sgMsh2	4947253	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	120	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon34:c.C3687A:p.T1229T	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998873	CCC	synonymous	NA	NA	NA	NA
M5	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	124	3	0	0	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.623294902	2	0.994917	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	132	19	8	0.421052632	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9991501	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	103	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996723	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	10462241	12A2p6	cell line	sgMsh2	10462241	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	140	43	11	0.255813953	exonic	Dnajc21	synonymous SNV	Dnajc21:NM_030046:exon3:c.T297G:p.G99G	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999679	AAC	synonymous	NA	NA	NA	NA
M5	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	70	190	45	0.236842105	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	1	0.9974014	TAT	synonymous	NA	NA	NA	NA
M5	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	96	45	14	0.311111111	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9936662	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	71	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9702256	CTT	nonsynonymous	G	5	GGGGG	NA
M5	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	114	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.703856828	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr15	28235733	12A2p6	cell line	sgMsh2	28235733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	229	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon8:c.T1005C:p.T335T	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9999998	CTG	synonymous	NA	NA	NA	NA
M5	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	120	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.6975003	TTG	synonymous	NA	NA	NA	NA
M5	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	145	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	31297384	12A2p6	cell line	sgMsh2	31297384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	25	0	0	NA	exonic	Ankrd33b	nonsynonymous SNV	"Ankrd33b:NM_001357922:exon3:c.T656C:p.V219A,Ankrd33b:NM_001164441:exon4:c.T1226C:p.V409A,Ankrd33b:NM_027496:exon4:c.T1199C:p.V400A,Ankrd33b:NM_001357923:exon5:c.T812C:p.V271A"	15qB2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	1	0.9578486	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	31492758	12A2p6	cell line	sgMsh2	31492758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	68	72	12	0.166666667	exonic	Marchf6	nonsynonymous SNV	Marchf6:NM_172606:exon9:c.A842G:p.D281G	15qB2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	215	57	9	0.157894737	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.682656321	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M5	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	108	32	5	0.15625	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	107	3922	876	0.223355431	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M5	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	624	156	0.25	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr15	39784630	12A2p6	cell line	sgMsh2	39784630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	86	0	0	NA	exonic	Dpys	nonsynonymous SNV	"Dpys:NM_001164466:exon9:c.A1528G:p.T510A,Dpys:NM_022722:exon9:c.A1528G:p.T510A"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9985235	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	201	47	16	0.340425532	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr15	44673420	12A2p6	cell line	sgMsh2	44673420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	199	0	0	NA	exonic	Sybu	synonymous SNV	"Sybu:NM_001285841:exon4:c.T495C:p.S165S,Sybu:NM_001285842:exon5:c.T495C:p.S165S,Sybu:NM_001285844:exon5:c.T714C:p.S238S,Sybu:NM_001032727:exon6:c.T909C:p.S303S,Sybu:NM_001285843:exon6:c.T822C:p.S274S,Sybu:NM_001285840:exon7:c.T1125C:p.S375S,Sybu:NM_001358583:exon7:c.T756C:p.S252S,Sybu:NM_001358584:exon7:c.T756C:p.S252S,Sybu:NM_001358582:exon8:c.T1122C:p.S374S,Sybu:NM_176998:exon8:c.T1509C:p.S503S,Sybu:NM_178765:exon8:c.T1125C:p.S375S"	15qB3.2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	GAG	synonymous	NA	NA	NA	NA
M5	chr15	47582455	12A2p6	cell line	sgMsh2	47582455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon71:c.T11120C:p.V3707A	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999318	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	47585645	12A2p6	cell line	sgMsh2	47585645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	66	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon70:c.T10952G:p.L3651R	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	103	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996723	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	47914060	12A2p6	cell line	sgMsh2	47914060	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	112	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon23:c.C3761T:p.S1254F	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9866345	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr15	48314092	12A2p6	cell line	sgMsh2	48314092	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	96	0	0	NA	exonic	Csmd3	frameshift deletion	Csmd3:NM_001081391:exon7:c.1049delT:p.L350Pfs*7	15qB3.3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.754738045	NA	NA	GAG	frameshift	NA	NA	NA	-1
M5	chr15	50846918	12A2p6	cell line	sgMsh2	50846918	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	122	0	0	NA	exonic	Trps1	frameshift deletion	"Trps1:NM_001310481:exon2:c.35delC:p.P12Lfs*1,Trps1:NM_001310485:exon2:c.35delC:p.P12Lfs*1,Trps1:NM_032000:exon2:c.23delC:p.P8Lfs*1"	15qC	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.958262911	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M5	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	111	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998017	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	82	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	TAA	synonymous	NA	NA	NA	NA
M5	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	82	10	2	0.2	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9938723	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	105	17	4	0.235294118	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	67	405	102	0.251851852	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	2	1	1	0.9968642	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	350	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	1.06E-09	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	81	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	TGA	synonymous	NA	NA	NA	NA
M5	chr15	65889623	12A2p6	cell line	sgMsh2	65889623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	0	0	NA	exonic	Oc90	nonsynonymous SNV	"Oc90:NM_001347038:exon7:c.A545G:p.N182S,Oc90:NM_010953:exon7:c.A545G:p.N182S"	15qD1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7399767	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	66912929	12A2p6	cell line	sgMsh2	66912929	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	41	0	0	NA	exonic	Ccn4	synonymous SNV	Ccn4:NM_018865:exon3:c.G450T:p.T150T	15qD2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9805333	CGG	synonymous	NA	NA	NA	NA
M5	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	66	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr15	73586721	12A2p6	cell line	sgMsh2	73586721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	91	18	4	0.222222222	exonic	Slc45a4	synonymous SNV	"Slc45a4:NM_001168255:exon4:c.T396C:p.S132S,Slc45a4:NM_001033219:exon5:c.T978C:p.S326S,Slc45a4:NM_001357747:exon5:c.T978C:p.S326S"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	CAC	synonymous	NA	NA	NA	NA
M5	chr15	73723510	12A2p6	cell line	sgMsh2	73723510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	178	0	0	NA	exonic	Ptp4a3	nonsynonymous SNV	Ptp4a3:NM_001166390:exon1:c.C43A:p.L15I	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999812	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr15	74611553	12A2p6	cell line	sgMsh2	74611553	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	53	0	0	NA	exonic	Mroh4	frameshift deletion	Mroh4:NM_001177437:exon19:c.1934delT:p.F645Sfs*4	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.814099464	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	78	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	66	59	11	0.186440678	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	149	7	2	0.285714286	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	121	148	43	0.290540541	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	GCG	synonymous	NA	NA	NA	NA
M5	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	35	124	35	0.282258065	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9572479	GTG	synonymous	NA	NA	NA	NA
M5	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.19	42	92	26	0.282608696	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8370264	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.19	42	96	28	0.291666667	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8370264	AGA	synonymous	NA	NA	NA	NA
M5	chr15	76240717	12A2p6	cell line	sgMsh2	76240717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	54	13	2	0.153846154	exonic	Parp10	synonymous SNV	"Parp10:NM_001163576:exon7:c.T1839C:p.A613A,Parp10:NM_001163575:exon8:c.T1839C:p.A613A"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9621864	TAG	synonymous	NA	NA	NA	NA
M5	chr15	76401587	12A2p6	cell line	sgMsh2	76401587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	77	49	9	0.183673469	exonic	Mroh1	synonymous SNV	"Mroh1:NM_001162489:exon4:c.G180A:p.P60P,Mroh1:NM_175457:exon5:c.G180A:p.P60P"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	CGT	synonymous	CCGTA	11	CCGTACCGTAC	NA
M5	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	92	11	0	0	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.742017741	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M5	chr15	76622239	12A2p6	cell line	sgMsh2	76622239	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	136	116	38	0.327586207	exonic	Vps28	synonymous SNV	"Vps28:NM_001305668:exon10:c.C546T:p.H182H,Vps28:NM_025842:exon10:c.C660T:p.H220H"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999588	CGT	synonymous	NA	NA	NA	NA
M5	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	129	143	8	0.055944056	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.996423823	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	75	29	3	0.103448276	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.720817234	2	0.571708	GGG	synonymous	NA	NA	NA	NA
M5	chr15	76715514	12A2p6	cell line	sgMsh2	76715514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	114	6	2	0.333333333	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon6:c.G1424A:p.G475E	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9852176	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	102	15	4	0.266666667	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr15	76890281	12A2p6	cell line	sgMsh2	76890281	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	99	67	16	0.23880597	exonic	Zfp7	synonymous SNV	"Zfp7:NM_001358816:exon5:c.C522T:p.H174H,Zfp7:NM_001358817:exon5:c.C519T:p.H173H,Zfp7:NM_001358818:exon5:c.C93T:p.H31H,Zfp7:NM_145916:exon5:c.C522T:p.H174H"	15qD3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9994634	ACC	synonymous	NA	NA	NA	NA
M5	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	169	421	113	0.268408551	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999948	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	61	7	2	0.285714286	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	95	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	CAG	synonymous	NA	NA	NA	NA
M5	chr15	78889034	12A2p6	cell line	sgMsh2	78889034	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	52	79	21	0.265822785	exonic	Gga1	synonymous SNV	Gga1:NM_145929:exon10:c.C861T:p.T287T	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	CCC	synonymous	NA	NA	NA	NA
M5	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	74	2129	502	0.235791451	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9634158	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	89	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9896862	CCT	synonymous	NA	NA	NA	NA
M5	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	114	27	0.236842105	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	109	78	18	0.230769231	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.999746	TCG	synonymous	NA	NA	NA	NA
M5	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	164	1	1	1	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9953217	TAT	synonymous	NA	NA	NA	NA
M5	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	115	89	21	0.235955056	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9998246	ATG	synonymous	NA	NA	NA	NA
M5	chr15	82299042	12A2p6	cell line	sgMsh2	82299042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	68	0	0	NA	exonic	Wbp2nl	synonymous SNV	Wbp2nl:NM_029066:exon1:c.T36C:p.R12R	15qE1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9922021	GTT	synonymous	NA	NA	NA	NA
M5	chr15	83904335	12A2p6	cell line	sgMsh2	83904335	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	88	0	0	NA	exonic	Efcab6	synonymous SNV	"Efcab6:NM_001161629:exon4:c.C243A:p.T81T,Efcab6:NM_001161628:exon6:c.C693A:p.T231T,Efcab6:NM_029946:exon23:c.C2757A:p.T919T"	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.733537538	2	0.5640834	CGG	synonymous	NA	NA	NA	NA
M5	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	228	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9999981	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	123	332	90	0.271084337	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9967118	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	223	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999995	CTC	synonymous	NA	NA	NA	NA
M5	chr15	85127511	12A2p6	cell line	sgMsh2	85127511	T	-	Deletion	Strelka2;Vardict	2	0.1481	81	0	0	NA	exonic	Smc1b	frameshift deletion	Smc1b:NM_080470:exon4:c.572delA:p.N191Mfs*1	15qE2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.627959014	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M5	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	30	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9688568	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	253	16	7	0.4375	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9996958	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr15	89300838	12A2p6	cell line	sgMsh2	89300838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	57	110	36	0.327272727	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon24:c.A3081G:p.T1027T,Sbf1:NM_001170561:exon24:c.A3081G:p.T1027T"	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.994139	GTG	synonymous	NA	NA	NA	NA
M5	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	69	37	7	0.189189189	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	GTA	synonymous	NA	NA	NA	NA
M5	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	147	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	135	42	13	0.30952381	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999561	CAC	synonymous	NA	NA	NA	NA
M5	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	93	115	33	0.286956522	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9788625	GTA	synonymous	NA	NA	NA	NA
M5	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	112	137	28	0.204379562	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9952365	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	55	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9933597	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr15	98543729	12A2p6	cell line	sgMsh2	98543729	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	103	81	18	0.222222222	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T1657G:p.L553V	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9751736	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	156	33	5	0.151515152	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9954198	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr15	98592746	12A2p6	cell line	sgMsh2	98592746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	137	142	39	0.274647887	exonic	Adcy6	nonsynonymous SNV	"Adcy6:NM_001368413:exon20:c.A3302G:p.Q1101R,Adcy6:NM_007405:exon21:c.A3308G:p.Q1103R"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	91	15	2	0.133333333	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.996307	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr15	98862972	12A2p6	cell line	sgMsh2	98862972	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	68	17	6	0.352941176	exonic	Kmt2d	synonymous SNV	Kmt2d:NM_001033276:exon11:c.T2496A:p.P832P	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	GAG	synonymous	NA	NA	NA	NA
M5	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	156	34	9	0.264705882	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999883	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr15	101940033	12A2p6	cell line	sgMsh2	101940033	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	42	11	2	0.181818182	exonic	Krt79	nonsynonymous SNV	Krt79:NM_146063:exon1:c.G182T:p.S61I	15qF2	chr15-3279130-102454328	4	2	2	0.99	4.197700362	NA	1	0.691136524	1	7.49E-05	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	81	8	0	0	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M5	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	124	30	6	0.2	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M5	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	114	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	146	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	46	8	1	0.125	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M5	chr16	4611385	12A2p6	cell line	sgMsh2	4611385	C	-	Deletion	Strelka2;Vardict	2	0.1964	56	38	6	0.157894737	exonic	Glis2	frameshift deletion	Glis2:NM_031184:exon4:c.451delC:p.K154Rfs*96	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TCC	frameshift	TCCT	16	CTTCCTCCTTCCTTCC	-1
M5	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	51	42	10	0.238095238	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	189	203	49	0.24137931	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999982	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	31	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9671806	ATG	synonymous	NA	NA	NA	NA
M5	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	52	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	CAA	synonymous	NA	NA	NA	NA
M5	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	44	18	6	0.333333333	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	2	1	1	0.9868351	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	175	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999931	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	91	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr16	10361310	12A2p6	cell line	sgMsh2	10361310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	98	0	0	NA	exonic	Tekt5	nonsynonymous SNV	Tekt5:NM_001291001:exon6:c.T1192C:p.C398R	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.998757	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	11319831	12A2p6	cell line	sgMsh2	11319831	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	158	0	0	NA	exonic	Tnfrsf17	nonsynonymous SNV	Tnfrsf17:NM_011608:exon3:c.C431A:p.P144Q	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999896	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr16	13685182	12A2p6	cell line	sgMsh2	13685182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	52	40	10	0.25	exonic	Bfar	nonsynonymous SNV	"Bfar:NM_001177552:exon2:c.A47C:p.E16A,Bfar:NM_025976:exon2:c.A47C:p.E16A"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.691136524	2	0.5515577	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	171	138	24	0.173913043	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8927225	ATG	synonymous	NA	NA	NA	NA
M5	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	98	310	60	0.193548387	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	199	240	58	0.241666667	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	CTA	synonymous	NA	NA	NA	NA
M5	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	107	249	39	0.156626506	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.737777639	2	0.6240391	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	129	122	33	0.270491803	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.9107032	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	113	52	9	0.173076923	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9974665	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M5	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	186	10	4	0.4	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999982	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	16436031	12A2p6	cell line	sgMsh2	16436031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	77	32	6	0.1875	exonic	Fgd4	nonsynonymous SNV	"Fgd4:NM_001301817:exon14:c.A2034G:p.I678M,Fgd4:NM_001301818:exon14:c.A1671G:p.I557M,Fgd4:NM_139232:exon14:c.A1671G:p.I557M"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	94	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.754738045	1	0.560324	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	81	7	1	0.142857143	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9902019	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	50	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	176	59	14	0.237288136	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9994511	CTC	synonymous	NA	NA	NA	NA
M5	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	100	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996044	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	59	47	17	0.361702128	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9948274	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	66	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.729297437	1	6.18E-07	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	58	139	42	0.302158273	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9638854	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr16	20600954	12A2p6	cell line	sgMsh2	20600954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	106	0	0	NA	exonic	Vwa5b2	stopgain	"Vwa5b2:NM_001384104:exon14:c.G1962A:p.W654X,Vwa5b2:NM_001384105:exon14:c.G1959A:p.W653X,Vwa5b2:NM_001144953:exon17:c.G1959A:p.W653X"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997286	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	60	515	123	0.238834951	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9951408	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	176	932	199	0.213519313	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999967	CTG	synonymous	NA	NA	NA	NA
M5	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	4	1	0.25	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9878085	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	70	6	3	0.5	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	155	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999875	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	23077559	12A2p6	cell line	sgMsh2	23077559	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	339	0	0	NA	exonic	Kng1	nonsynonymous SNV	"Kng1:NM_001102411:exon9:c.G1111T:p.A371S,Kng1:NM_001102412:exon9:c.G1111T:p.A371S,Kng1:NM_023125:exon9:c.G1111T:p.A371S"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	1.12E-09	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	142	260	65	0.25	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999717	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	25981189	12A2p6	cell line	sgMsh2	25981189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	193	9	5	0.555555556	exonic	P3h2	nonsynonymous SNV	P3h2:NM_173379:exon8:c.A1253G:p.H418R	16qB1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9999761	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr16	30550411	12A2p6	cell line	sgMsh2	30550411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	17	2	0	0	exonic	Tmem44	nonsynonymous SNV	"Tmem44:NM_001357414:exon1:c.T89G:p.F30C,Tmem44:NM_001384248:exon1:c.T89G:p.F30C,Tmem44:NM_172614:exon1:c.T89G:p.F30C"	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9321778	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr16	31944927	12A2p6	cell line	sgMsh2	31944927	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	147	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T802G:p.F268V	16qB2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	32626675	12A2p6	cell line	sgMsh2	32626675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	181	364	89	0.244505495	exonic	Tfrc	nonsynonymous SNV	"Tfrc:NM_001357298:exon17:c.A1813G:p.T605A,Tfrc:NM_011638:exon17:c.A1813G:p.T605A"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999976	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	32756512	12A2p6	cell line	sgMsh2	32756512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	237	21	1	0.047619048	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon4:c.A6385G:p.T2129A	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9894261	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	141	19	5	0.263157895	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999699	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	335	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.999985	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	207	50	9	0.18	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	94	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994234	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	35291578	12A2p6	cell line	sgMsh2	35291578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	68	0	0	NA	exonic	Adcy5	nonsynonymous SNV	Adcy5:NM_001012765:exon15:c.T2804C:p.V935A	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	2	1	1	0.9970545	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.24	23	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9524732	CTT	synonymous	NA	NA	NA	NA
M5	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	99	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9817037	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	36187978	12A2p6	cell line	sgMsh2	36187978	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	278	0	0	NA	exonic	Cstdc4	frameshift deletion	Cstdc4:NM_001082547:exon3:c.233delT:p.L79fs*0	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr16	36510002	12A2p6	cell line	sgMsh2	36510002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	156	0	0	NA	exonic	Casr	nonsynonymous SNV	Casr:NM_013803:exon4:c.G969T:p.K323N	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999883	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	105	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	GAT	synonymous	NA	NA	NA	NA
M5	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	75	5	1	0.2	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.09981288	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr16	37535918	12A2p6	cell line	sgMsh2	37535918	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	329	66	17	0.257575758	exonic	Gtf2e1	nonsynonymous SNV	"Gtf2e1:NM_001355727:exon2:c.G251A:p.G84E,Gtf2e1:NM_028812:exon2:c.G251A:p.G84E"	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	1.22E-09	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	45	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9791979	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr16	43609614	12A2p6	cell line	sgMsh2	43609614	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	118	14	5	0.357142857	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.C268T:p.L90L,Zbtb20:NM_019778:exon8:c.C487T:p.L163L,Zbtb20:NM_001285805:exon10:c.C487T:p.L163L"	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9998295	GCT	synonymous	NA	NA	NA	NA
M5	chr16	43610242	12A2p6	cell line	sgMsh2	43610242	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	75	18	1	0.055555556	exonic	Zbtb20	nonsynonymous SNV	"Zbtb20:NM_181058:exon6:c.G896T:p.G299V,Zbtb20:NM_019778:exon8:c.G1115T:p.G372V,Zbtb20:NM_001285805:exon10:c.G1115T:p.G372V"	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9835409	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	240	22	0	0	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	TCT	synonymous	NA	NA	NA	NA
M5	chr16	44216308	12A2p6	cell line	sgMsh2	44216308	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	15	4	0.266666667	exonic	Usf3	nonsynonymous SNV	Usf3:NM_001029889:exon8:c.C1150A:p.P384T	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	178	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9931491	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	48817292	12A2p6	cell line	sgMsh2	48817292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	107	0	0	NA	exonic	Retnlb	nonsynonymous SNV	Retnlb:NM_023881:exon2:c.T80C:p.F27S	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9996184	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	205	159	31	0.194968553	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	69	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9972334	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	176	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999967	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	179	479	118	0.246346555	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999972	CAC	synonymous	NA	NA	NA	NA
M5	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	194	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	88	274	52	0.189781022	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	277	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	6.87E-09	CTG	synonymous	NA	NA	NA	NA
M5	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	192	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	294	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr16	59303332	12A2p6	cell line	sgMsh2	59303332	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	363	0	0	NA	exonic	Olfr203	frameshift deletion	Olfr203:NM_146486:exon1:c.178delT:p.F61Sfs*4	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	68	3	0	0	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9950196	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	53	7	0	0	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.949782708	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5	chr16	62776550	12A2p6	cell line	sgMsh2	62776550	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	148	9	2	0.222222222	exonic	Nsun3	synonymous SNV	Nsun3:NM_178925:exon3:c.C204A:p.A68A	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.67841622	2	0.9828006	AGG	synonymous	NA	NA	NA	NA
M5	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.2564	78	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M5	chr16	65523559	12A2p6	cell line	sgMsh2	65523559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	116	0	0	NA	exonic	Pou1f1	nonsynonymous SNV	Pou1f1:NM_001362468:exon1:c.A109G:p.T37A	16qC1.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998552	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	225	29	8	0.275862069	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9999224	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	48	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	CTG	synonymous	NA	NA	NA	NA
M5	chr16	85795776	12A2p6	cell line	sgMsh2	85795776	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	125	29	6	0.206896552	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.G2532A:p.K844K	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	0.5354457	TCT	synonymous	TCT	11	TCTTCTTCTTC	NA
M5	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	147	573	126	0.219895288	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9998287	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	98	56	13	0.232142857	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9758248	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr16	88729227	12A2p6	cell line	sgMsh2	88729227	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	74	0	0	NA	exonic	Krtap13-1	nonsynonymous SNV	Krtap13-1:NM_183189:exon1:c.G338T:p.G113V	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	2	1	1	0.9979776	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr16	89897828	12A2p6	cell line	sgMsh2	89897828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	150	7	0	0	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.G740A:p.G247E,Tiam1:NM_009384:exon4:c.G740A:p.G247E"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999829	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr16	89898041	12A2p6	cell line	sgMsh2	89898041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	102	8	0	0	exonic	Tiam1	stopgain	"Tiam1:NM_001145886:exon4:c.G527A:p.W176X,Tiam1:NM_009384:exon4:c.G527A:p.W176X"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	155	32	8	0.25	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9996748	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	77	8	0	0	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.725057335	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M5	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	175	12	3	0.25	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999964	CGC	synonymous	NA	NA	NA	NA
M5	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	137	105	35	0.333333333	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M5	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2	2	0.228	37	152	39	0.256578947	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9704631	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	59	45	13	0.288888889	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9760043	GTA	synonymous	NA	NA	NA	NA
M5	chr16	94384051	12A2p6	cell line	sgMsh2	94384051	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	306	155	36	0.232258065	exonic	Ttc3	synonymous SNV	Ttc3:NM_009441:exon2:c.T129G:p.L43L	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	1	1.95E-09	TTT	synonymous	NA	NA	NA	NA
M5	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	143	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999734	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	177	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr16	97951903	12A2p6	cell line	sgMsh2	97951903	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.342	97	43	12	0.279069767	exonic	Zbtb21	frameshift deletion	"Zbtb21:NM_001081684:exon2:c.1179delA:p.A394Lfs*30,Zbtb21:NM_001081685:exon3:c.1263delA:p.A422Lfs*30,Zbtb21:NM_175428:exon3:c.1263delA:p.A422Lfs*30"	16qC4	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M5	chr17	3533187	12A2p6	cell line	sgMsh2	3533187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	98	0	0	NA	exonic	Cldn20	nonsynonymous SNV	Cldn20:NM_001101560:exon1:c.G634A:p.A212T	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9546842	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr17	5712447	12A2p6	cell line	sgMsh2	5712447	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	87	0	0	NA	exonic	Zdhhc14	frameshift deletion	Zdhhc14:NM_146073:exon4:c.625delT:p.Y211Ifs*9	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.911621796	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	181	87	11	0.126436782	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999976	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	99	30	8	0.266666667	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	13010572	12A2p6	cell line	sgMsh2	13010572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	104	156	45	0.288461538	exonic	Sod2	synonymous SNV	Sod2:NM_013671:exon3:c.G279A:p.G93G	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	GGG	synonymous	G	5	GGGGG	NA
M5	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	855	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.530012672	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	810	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.513052266	2	1	CCT	synonymous	NA	NA	NA	NA
M5	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	67	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	15527044	12A2p6	cell line	sgMsh2	15527044	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.571	6	29	5	0.172413793	exonic	Pdcd2	nonsynonymous SNV	Pdcd2:NM_008799:exon1:c.G230A:p.R77H	17qA2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.8722439	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	78	108	21	0.194444444	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.8176659	CAT	synonymous	NA	NA	NA	NA
M5	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	274	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	8.09E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	18022702	12A2p6	cell line	sgMsh2	18022702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	122	0	0	NA	exonic	Fpr-rs4	stoploss	Fpr-rs4:NM_008041:exon1:c.T970C:p.X324Q	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999006	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	245	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr17	18929203	12A2p6	cell line	sgMsh2	18929203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	384	0	0	NA	exonic	Vmn2r97	nonsynonymous SNV	"Vmn2r97:NM_001104549:exon3:c.T852G:p.I284M,Vmn2r97:NM_001385078:exon3:c.T852G:p.I284M"	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.01E-09	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	128	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9997417	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.324	254	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	2.59E-08	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	239	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.746257842	2	0.9178465	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	437	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.236	400	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M5	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	163	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999587	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	157	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999989	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	155	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999875	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr17	20502548	12A2p6	cell line	sgMsh2	20502548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	187	0	0	NA	exonic	Vmn1r225	nonsynonymous SNV	Vmn1r225:NM_134194:exon1:c.A250G:p.I84V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999983	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	20687637	12A2p6	cell line	sgMsh2	20687637	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	144	0	0	NA	exonic	Vmn1r226	nonsynonymous SNV	Vmn1r226:NM_134191:exon1:c.G130T:p.D44Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	200	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9999353	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr17	20846718	12A2p6	cell line	sgMsh2	20846718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	196	0	0	NA	exonic	Vmn1r230	synonymous SNV	Vmn1r230:NM_134197:exon1:c.A168G:p.K56K	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9999548	AAC	synonymous	NA	NA	NA	NA
M5	chr17	20994197	12A2p6	cell line	sgMsh2	20994197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	188	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.G490A:p.E164K	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.83105987	1	0.9684001	TCA	nonsynonymous	NA	NA	NA	NA
M5	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	159	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999903	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr17	22548681	12A2p6	cell line	sgMsh2	22548681	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	458	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon6:c.C1834T:p.H612Y	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.975308	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	293	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.67841622	2	0.9999274	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	23732620	12A2p6	cell line	sgMsh2	23732620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	28	24	6	0.25	exonic	Pkmyt1	nonsynonymous SNV	Pkmyt1:NM_023058:exon2:c.G147T:p.K49N	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9648342	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	23919159	12A2p6	cell line	sgMsh2	23919159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	192	0	0	NA	exonic	Dcpp3	nonsynonymous SNV	Dcpp3:NM_001077633:exon4:c.A290G:p.Y97C	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999988	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	136	100	27	0.27	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.775938552	1	0.6362832	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	119	131	26	0.198473282	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.99988	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	37	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9797122	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	24628994	12A2p6	cell line	sgMsh2	24628994	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	131	54	4	0.074074074	exonic	Tsc2	frameshift deletion	"Tsc2:NM_001039363:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286713:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286714:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286716:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286718:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286720:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_011647:exon5:c.429delT:p.F143Lfs*58"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.903141593	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	103	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9915421	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	92	99	20	0.202020202	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9906723	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr17	25089506	12A2p6	cell line	sgMsh2	25089506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	29	45	8	0.177777778	exonic	Ift140	synonymous SNV	Ift140:NM_134126:exon23:c.G3108A:p.R1036R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9669045	GGG	synonymous	NA	NA	NA	NA
M5	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	52	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.720817234	1	7.04E-06	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	25964418	12A2p6	cell line	sgMsh2	25964418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	56	14	2	0.142857143	exonic	Capn15	nonsynonymous SNV	"Capn15:NM_015830:exon1:c.A1088G:p.N363S,Capn15:NM_001347334:exon3:c.A1286G:p.N429S"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9617488	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	30	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9624822	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.173	22	3	2	0.666666667	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.733537538	1	0.7500262	GAG	synonymous	NA	NA	NA	NA
M5	chr17	27032945	12A2p6	cell line	sgMsh2	27032945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	48	13	2	0.153846154	exonic	Ggnbp1	nonsynonymous SNV	"Ggnbp1:NM_027544:exon4:c.A893G:p.K298R,Ggnbp1:NM_001251881:exon5:c.A569G:p.K190R"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	118	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	81	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9942521	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	85	33	17	0.515151515	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989856	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	75	54	13	0.240740741	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.8908818	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	70	246	62	0.25203252	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9378222	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	146	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	29169421	12A2p6	cell line	sgMsh2	29169421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	66	0	0	NA	exonic	Cpne5	nonsynonymous SNV	"Cpne5:NM_153166:exon13:c.A893G:p.Y298C,Cpne5:NM_001360239:exon14:c.A944G:p.Y315C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.8843384	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	151	73	14	0.191780822	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	48	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.661455815	2	9.66E-05	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M5	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	174	75	3	0.04	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.699616727	2	0.9796592	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	121	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.809859363	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.21	98	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9872348	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr17	30813150	12A2p6	cell line	sgMsh2	30813150	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon82:c.A12443G:p.H4148R	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9914781	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	84	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.580893888	2	0.984976	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	137	33	14	0.424242424	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9979497	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M5	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	86	24	2	0.083333333	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M5	chr17	32418211	12A2p6	cell line	sgMsh2	32418211	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	53	0	0	NA	exonic	Pglyrp2	nonsynonymous SNV	"Pglyrp2:NM_001271477:exon2:c.G842T:p.R281I,Pglyrp2:NM_001271479:exon2:c.G842T:p.R281I,Pglyrp2:NM_021319:exon2:c.G842T:p.R281I,Pglyrp2:NM_001271476:exon3:c.G842T:p.R281I,Pglyrp2:NM_001271478:exon3:c.G842T:p.R281I"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.988697	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	106	59	14	0.237288136	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.652975612	2	0.9644534	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	33302335	12A2p6	cell line	sgMsh2	33302335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	352	24	7	0.291666667	exonic	Zfp955b	synonymous SNV	Zfp955b:NM_001142957:exon4:c.A777G:p.S259S	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.05E-09	CAT	synonymous	NA	NA	NA	NA
M5	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	56	16	1	0.0625	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9937614	AAG	synonymous	NA	NA	NA	NA
M5	chr17	33640763	12A2p6	cell line	sgMsh2	33640763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	51	0	0	NA	exonic	Pram1	synonymous SNV	Pram1:NM_001002842:exon2:c.A303G:p.E101E	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.991479	AAT	synonymous	NA	NA	NA	NA
M5	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	56	40	13	0.325	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7445066	ATT	synonymous	NA	NA	NA	NA
M5	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	39	79	15	0.189873418	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9820644	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	34135711	12A2p6	cell line	sgMsh2	34135711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	104	0	0	NA	exonic	H2-DMa	nonsynonymous SNV	"H2-DMa:NM_001360530:exon2:c.T41C:p.L14P,H2-DMa:NM_010386:exon2:c.T41C:p.L14P"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9876456	CTG	nonsynonymous	GCT	8	GCTGCTGC	NA
M5	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	27	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9626395	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	93	1	1	1	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	93	1	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.999386	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	54	3	2	0.666666667	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9929322	GAG	nonsynonymous	C	5	CCCCC	NA
M5	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	76	1	0	0	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	GCT	synonymous	G	5	GGGGG	NA
M5	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	26	4	1	0.25	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9603133	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	45	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9876267	TAG	synonymous	NA	NA	NA	NA
M5	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	170	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9998262	CAG	synonymous	NA	NA	NA	NA
M5	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	79	77	13	0.168831169	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.746257842	1	0.5601923	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	35065580	12A2p6	cell line	sgMsh2	35065580	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	87	0	0	NA	exonic	Mpig6b	nonsynonymous SNV	"Mpig6b:NM_001033221:exon2:c.C386A:p.P129H,Mpig6b:NM_001191012:exon2:c.C386A:p.P129H"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.691136524	2	0.8008579	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	35111808	12A2p6	cell line	sgMsh2	35111808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	99	0	0	NA	exonic	Ly6g5c	nonsynonymous SNV	Ly6g5c:NM_148947:exon3:c.T305C:p.M102T	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	130	492	136	0.276422764	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999399	CGC	synonymous	NA	NA	NA	NA
M5	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	75	72	22	0.305555556	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	ATG	synonymous	NA	NA	NA	NA
M5	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	51	42	9	0.214285714	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	TAC	synonymous	NA	NA	NA	NA
M5	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	149	111	30	0.27027027	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.733537538	2	0.8194991	CAG	synonymous	NA	NA	NA	NA
M5	chr17	35853626	12A2p6	cell line	sgMsh2	35853626	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	156	75	20	0.266666667	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon10:c.G4065T:p.K1355N	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999883	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	61	93	16	0.172043011	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.104	87	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.440970543	2	0.940417	CAG	synonymous	NA	NA	NA	NA
M5	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	117	1	1	1	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9996631	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr17	36909539	12A2p6	cell line	sgMsh2	36909539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	94	1	0	0	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1346G:p.Y449C	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9573628	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	133	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999502	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	378	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	410	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	5.44E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M5	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.27	175	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M5	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	173	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999996	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	138	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	38335566	12A2p6	cell line	sgMsh2	38335566	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	373	0	0	NA	exonic	Olfr136	nonsynonymous SNV	Olfr136:NM_146807:exon1:c.G408C:p.M136I	17qB1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.01E-09	TGA	nonsynonymous	NA	NA	NA	NA
M5	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	410	4	1	0.25	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	60	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9951408	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	44	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	218	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999993	AGG	synonymous	NA	NA	NA	NA
M5	chr17	43478172	12A2p6	cell line	sgMsh2	43478172	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	74	4	0	0	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon12:c.C1751T:p.A584V	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9928979	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	82	1	0	0	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9968009	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	43594855	12A2p6	cell line	sgMsh2	43594855	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.29	102	22	0	0	exonic	Pla2g7	frameshift insertion	Pla2g7:NM_013737:exon4:c.306dupT:p.L104Ffs*3	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAT	frameshift	T	5	TTTTT	1
M5	chr17	44991768	12A2p6	cell line	sgMsh2	44991768	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	74	69	18	0.260869565	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon4:c.G221T:p.G74V	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9231036	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	142	81	12	0.148148148	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9990153	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	45695545	12A2p6	cell line	sgMsh2	45695545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	71	107	31	0.289719626	exonic	Mrpl14	nonsynonymous SNV	Mrpl14:NM_026732:exon2:c.G44A:p.S15N	17qB3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	110	103	32	0.310679612	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.989486	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	14	29	4	0.137931034	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9192162	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	111	50	7	0.14	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9997755	AGG	synonymous	NA	NA	NA	NA
M5	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr17	46307266	12A2p6	cell line	sgMsh2	46307266	C	T	SNV	Mutect2;Vardict	2	0.086	36	3	0	0	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon13:c.G2957A:p.G986D,Abcc10:NM_001347396:exon14:c.G3080A:p.G1027D,Abcc10:NM_170680:exon14:c.G3080A:p.G1027D"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.364648718	2	0.7541352	GCC	nonsynonymous	CCGG	8	CCGGCCGG	NA
M5	chr17	46540452	12A2p6	cell line	sgMsh2	46540452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	72	0	0	NA	exonic	Cul9	synonymous SNV	Cul9:NM_001081335:exon4:c.T1041C:p.P347P	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	GAG	synonymous	AGC	8	AGCAGCAG	NA
M5	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	101	78	16	0.205128205	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996285	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr17	46722293	12A2p6	cell line	sgMsh2	46722293	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	48	39	11	0.282051282	exonic	Pex6	nonsynonymous SNV	Pex6:NM_145488:exon8:c.C1741T:p.P581S	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr17	46919808	12A2p6	cell line	sgMsh2	46919808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	78	0	0	NA	exonic	Prph2	nonsynonymous SNV	Prph2:NM_008938:exon2:c.T626C:p.V209A	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9817426	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	35	25	7	0.28	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9770586	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr17	50608351	12A2p6	cell line	sgMsh2	50608351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	123	29	0	0	exonic	Plcl2	nonsynonymous SNV	Plcl2:NM_013880:exon2:c.C2387T:p.A796V	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999067	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	67	27	0	0	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9959659	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	50852534	12A2p6	cell line	sgMsh2	50852534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	77	16	3	0.1875	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon15:c.A1244G:p.K415R,Tbc1d5:NM_001285993:exon15:c.A1244G:p.K415R,Tbc1d5:NM_028162:exon15:c.A1244G:p.K415R"	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	52894041	12A2p6	cell line	sgMsh2	52894041	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	123	0	0	NA	exonic	Kcnh8	nonsynonymous SNV	Kcnh8:NM_001031811:exon9:c.A1502T:p.Q501L	17qC	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999067	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	56105023	12A2p6	cell line	sgMsh2	56105023	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	348	0	0	NA	exonic	Plin4	synonymous SNV	"Plin4:NM_001372234:exon5:c.C2601A:p.A867A,Plin4:NM_020568:exon6:c.C2007A:p.A669A"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	1.07E-09	AGG	synonymous	NA	NA	NA	NA
M5	chr17	56115591	12A2p6	cell line	sgMsh2	56115591	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	117	0	0	NA	exonic	Plin5	stopgain	"Plin5:NM_001077348:exon4:c.T344A:p.L115X,Plin5:NM_025874:exon5:c.T344A:p.L115X"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	41	189	36	0.19047619	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9841483	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	102	60	14	0.233333333	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	56620331	12A2p6	cell line	sgMsh2	56620331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	68	287	98	0.341463415	exonic	Lonp1	nonsynonymous SNV	Lonp1:NM_028782:exon6:c.G921A:p.M307I	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	GCA	nonsynonymous	GCCT	10	GCCTGCCTGC	NA
M5	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.9404422	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	63	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8426258	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	107	16	8	0.5	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9849159	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	57450038	12A2p6	cell line	sgMsh2	57450038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	58	0	0	NA	exonic	Adgre1	nonsynonymous SNV	"Adgre1:NM_001355722:exon17:c.T2294C:p.L765P,Adgre1:NM_001355723:exon17:c.T2246C:p.L749P,Adgre1:NM_010130:exon17:c.T2294C:p.L765P"	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	183	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999978	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	121	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	65	784	176	0.224489796	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	TAG	synonymous	NA	NA	NA	NA
M5	chr17	65850038	12A2p6	cell line	sgMsh2	65850038	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	36	83	19	0.228915663	exonic	Ralbp1	nonsynonymous SNV	"Ralbp1:NM_001198949:exon10:c.C1859T:p.P620L,Ralbp1:NM_009067:exon10:c.C1859T:p.P620L"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	2	1	1	0.9784253	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	24	59	18	0.305084746	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9552378	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M5	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	84	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M5	chr17	67631691	12A2p6	cell line	sgMsh2	67631691	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	72	0	0	NA	exonic	Lrrc30	nonsynonymous SNV	Lrrc30:NM_001033340:exon1:c.A893C:p.K298T	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9397278	CTT	nonsynonymous	T	5	TTTTT	NA
M5	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	120	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998873	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr17	67786098	12A2p6	cell line	sgMsh2	67786098	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon36:c.G5130A:p.L1710L	17qE1.1	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	TGC	synonymous	NA	NA	NA	NA
M5	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	21	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7974659	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	71749467	12A2p6	cell line	sgMsh2	71749467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	62	0	0	NA	exonic	Pcare	stopgain	Pcare:NM_146082:exon1:c.G3214T:p.E1072X	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	TCT	nonsynonymous	TGTT	9	TGTTTGTTT	NA
M5	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	16	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9280901	CTG	synonymous	NA	NA	NA	NA
M5	chr17	72939421	12A2p6	cell line	sgMsh2	72939421	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	65	166	44	0.265060241	exonic	Lbh	nonsynonymous SNV	Lbh:NM_029999:exon3:c.A295C:p.T99P	17qE1.3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9862044	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	79	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	44	49	15	0.306122449	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	GTG	synonymous	NA	NA	NA	NA
M5	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	99	73	21	0.287671233	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8518575	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	146	90	22	0.244444444	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9776825	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	180	94	24	0.255319149	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999974	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	179	80	24	0.3	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999946	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M5	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	100	110	22	0.2	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8521074	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	84560109	12A2p6	cell line	sgMsh2	84560109	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	192	19	5	0.263157895	exonic	Plekhh2	nonsynonymous SNV	"Plekhh2:NM_001357986:exon6:c.C442A:p.L148I,Plekhh2:NM_001357987:exon6:c.C442A:p.L148I,Plekhh2:NM_177606:exon6:c.C442A:p.L148I"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999988	TCT	nonsynonymous	AGAATC	12	AGAATCAGAATC	NA
M5	chr17	84672164	12A2p6	cell line	sgMsh2	84672164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	98	0	0	NA	exonic	Abcg5	nonsynonymous SNV	Abcg5:NM_031884:exon6:c.A767G:p.E256G	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.525772571	2	0.9983544	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.712337031	2	0.7772678	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	50	1	0	0	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	CTC	synonymous	NA	NA	NA	NA
M5	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	5	2	0.4	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-87650787	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9340834	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.341	98	28	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	4	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M5	chr17	87679880	12A2p6	cell line	sgMsh2	87679880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	599	106	0	0	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon3:c.T447C:p.G149G	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.207764967	3	1	GTA	synonymous	NA	NA	NA	NA
M5	chr17	87679899	12A2p6	cell line	sgMsh2	87679899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	673	112	43	0.383928571	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.G466A:p.D156N	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.250165981	3	1	TGA	nonsynonymous	NA	NA	NA	NA
M5	chr17	87717533	12A2p6	cell line	sgMsh2	87717533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	511	147	4	0.027210884	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon12:c.A1838G:p.N613S	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.3095274	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr17	87723354	12A2p6	cell line	sgMsh2	87723354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.047	278	108	1	0.009259259	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon16:c.G2658A:p.E886E	17qE4	chr17-87672302-87723786	12.82082004	9.82082004	3	0.99	4.197700362	NA	1	0.199284765	3	1	AGT	synonymous	NA	NA	NA	NA
M5	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	174	154	39	0.253246753	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	19	4	0.210526316	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr18	5063222	12A2p6	cell line	sgMsh2	5063222	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	77	40	11	0.275	exonic	Svil	nonsynonymous SNV	"Svil:NM_001347449:exon8:c.C1280T:p.S427F,Svil:NM_153153:exon12:c.C2492T:p.S831F"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	TCC	nonsynonymous	C	5	CCCCC	NA
M5	chr18	5767349	12A2p6	cell line	sgMsh2	5767349	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	30	6	0.2	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.C1691T:p.P564L,Zeb1:NM_011546:exon6:c.C1859T:p.P620L,Zeb1:NM_001360981:exon7:c.C1808T:p.P603L"	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	249	125	35	0.28	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	4.60E-08	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M5	chr18	7222616	12A2p6	cell line	sgMsh2	7222616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	127	0	0	NA	exonic	Armc4	nonsynonymous SNV	Armc4:NM_001357492:exon13:c.C1652T:p.T551M	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9704028	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	93	162	33	0.203703704	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	145	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9999279	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	155	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999875	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	143	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999734	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr18	20591962	12A2p6	cell line	sgMsh2	20591962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	210	61	10	0.163934426	exonic	Dsg2	nonsynonymous SNV	Dsg2:NM_007883:exon10:c.T1424C:p.V475A	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	107	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8706918	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	87	51	2	0.039215686	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.758978146	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	72	12	5	0.416666667	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	73	17	1	0.058823529	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	84	51	12	0.235294118	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	148	91	28	0.307692308	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999806	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	115	63	18	0.285714286	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9982721	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	83	147	32	0.217687075	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	TAC	synonymous	T	5	TTTTT	NA
M5	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	118	721	189	0.262135922	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.767458349	1	0.5933	ATT	synonymous	NA	NA	NA	NA
M5	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	83	398	83	0.208542714	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9926933	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	264	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	1.43E-08	ATT	synonymous	ATT	9	ATTATTATT	NA
M5	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	182	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999977	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.229	104	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.999209	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	185	2	0	0	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.758978146	2	0.6858445	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	93	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	0.647361	ATT	nonsynonymous	T	5	TTTTT	NA
M5	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	99	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9994634	CAG	synonymous	NA	NA	NA	NA
M5	chr18	37497762	12A2p6	cell line	sgMsh2	37497762	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	146	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.G609T:p.E203D	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	235	4	0	0	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr18	37820925	12A2p6	cell line	sgMsh2	37820925	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	129	1	0	0	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1251C:p.T417T	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9911532	CAT	synonymous	NA	NA	NA	NA
M5	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	244	273	48	0.175824176	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	4.77E-08	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	59	43	10	0.23255814	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.606334497	2	0.8816304	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	114	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	108	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	GTT	nonsynonymous	T	5	TTTTT	NA
M5	chr18	41991824	12A2p6	cell line	sgMsh2	41991824	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.188	73	0	0	NA	exonic	Grxcr2	frameshift insertion	Grxcr2:NM_001033426:exon2:c.517dupC:p.L173Pfs*18	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.797139059	NA	NA	CAG	frameshift	G	5	GGGGG	1
M5	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	70	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr18	42250855	12A2p6	cell line	sgMsh2	42250855	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	153	266	62	0.233082707	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon4:c.T274G:p.L92V	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9997114	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr18	42322165	12A2p6	cell line	sgMsh2	42322165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	98	72	11	0.152777778	exonic	Rbm27	nonsynonymous SNV	Rbm27:NM_172626:exon12:c.T1982C:p.V661A	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	184	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.999998	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr18	43969320	12A2p6	cell line	sgMsh2	43969320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	123	0	0	NA	exonic	Spink5	nonsynonymous SNV	Spink5:NM_001081180:exon4:c.A238G:p.N80D	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9996049	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr18	44342437	12A2p6	cell line	sgMsh2	44342437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	77	0	0	NA	exonic	Myot	synonymous SNV	Myot:NM_001033621:exon4:c.A624G:p.S208S	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9622515	CAC	synonymous	NA	NA	NA	NA
M5	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	122	15	0	0	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9979047	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr18	44871502	12A2p6	cell line	sgMsh2	44871502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	194	18	3	0.166666667	exonic	Ythdc2	synonymous SNV	Ythdc2:NM_001163013:exon24:c.T3342C:p.T1114T	18qB3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.6570851	CTG	synonymous	NA	NA	NA	NA
M5	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	145	2	0	0	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	AAG	synonymous	NA	NA	NA	NA
M5	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	311	597	127	0.212730318	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	1.69E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr18	47248715	12A2p6	cell line	sgMsh2	47248715	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	88	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.C2599A:p.P867T,Sema6a:NM_018744:exon19:c.C2764A:p.P922T"	18qC	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr18	48046948	12A2p6	cell line	sgMsh2	48046948	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.278	16	223	0	0	exonic	Eno1b	nonsynonymous SNV	Eno1b:NM_001025388:exon2:c.G192T:p.Q64H	18qC	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9280901	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr18	49877917	12A2p6	cell line	sgMsh2	49877917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	306	26	5	0.192307692	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon18:c.T3140C:p.V1047A	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	1.95E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	119	47	11	0.234042553	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9820079	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	52871437	12A2p6	cell line	sgMsh2	52871437	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	105	0	0	NA	exonic	Sncaip	nonsynonymous SNV	"Sncaip:NM_001199151:exon5:c.G1135A:p.E379K,Sncaip:NM_001199153:exon5:c.G1135A:p.E379K,Sncaip:NM_001199154:exon5:c.G1135A:p.E379K,Sncaip:NM_026408:exon5:c.G1135A:p.E379K"	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9908714	TGA	nonsynonymous	TGAA	8	TGAATGAA	NA
M5	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	25	75	12	0.16	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9578486	CGA	synonymous	NA	NA	NA	NA
M5	chr18	54987755	12A2p6	cell line	sgMsh2	54987755	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	88	20	2	0.1	exonic	Zfp608	synonymous SNV	Zfp608:NM_175751:exon2:c.C759T:p.G253G	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	CGC	synonymous	C	5	CCCCC	NA
M5	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	77	10	0	0	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	113	267	53	0.198501873	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	CTA	synonymous	NA	NA	NA	NA
M5	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	71	179	52	0.290502793	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	1	0.9975592	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr18	60390684	12A2p6	cell line	sgMsh2	60390684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	236	0	0	NA	exonic	Iigp1	synonymous SNV	"Iigp1:NM_001146275:exon3:c.A873G:p.L291L,Iigp1:NM_021792:exon3:c.A873G:p.L291L"	18qD3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.8012965	TAG	synonymous	NA	NA	NA	NA
M5	chr18	61019829	12A2p6	cell line	sgMsh2	61019829	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	57	0	0	NA	exonic	Cdx1	nonsynonymous SNV	Cdx1:NM_009880:exon3:c.C704A:p.T235N	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.994139	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr18	61575445	12A2p6	cell line	sgMsh2	61575445	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	172	967	210	0.217166494	exonic	Csnk1a1	synonymous SNV	"Csnk1a1:NM_001357500:exon5:c.C492T:p.Y164Y,Csnk1a1:NM_146087:exon5:c.C492T:p.Y164Y,Csnk1a1:NM_001357498:exon6:c.C576T:p.Y192Y,Csnk1a1:NM_001357499:exon6:c.C576T:p.Y192Y"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999957	ACA	synonymous	NA	NA	NA	NA
M5	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	112	140	40	0.285714286	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.988459	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr18	63050579	12A2p6	cell line	sgMsh2	63050579	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	131	0	0	NA	exonic	Piezo2	synonymous SNV	Piezo2:NM_001039485:exon37:c.G5253A:p.Q1751Q	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9858862	CCT	synonymous	NA	NA	NA	NA
M5	chr18	63796180	12A2p6	cell line	sgMsh2	63796180	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	91	17	7	0.411764706	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon18:c.T2990G:p.L997R,Wdr7:NM_001014981:exon19:c.T3086G:p.L1029R"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.936994	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	117	158	48	0.303797468	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8904589	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	77	127	34	0.267716535	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9442553	TTT	nonsynonymous	T	5	TTTTT	NA
M5	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	77	49	11	0.224489796	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9983244	TTT	synonymous	NA	NA	NA	NA
M5	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	109	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9985609	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr18	71682179	12A2p6	cell line	sgMsh2	71682179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	123	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon6:c.G1123A:p.D375N	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8765363	TCA	nonsynonymous	NA	NA	NA	NA
M5	chr18	74714856	12A2p6	cell line	sgMsh2	74714856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	63	63	12	0.19047619	exonic	Myo5b	nonsynonymous SNV	Myo5b:NM_201600:exon24:c.A3164G:p.N1055S	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9850198	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	143	61	17	0.278688525	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999734	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	45	6	3	0.5	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	9.79E-08	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	121	24	8	0.333333333	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	82624244	12A2p6	cell line	sgMsh2	82624244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	86	39	10	0.256410256	exonic	Zfp236	nonsynonymous SNV	"Zfp236:NM_177832:exon19:c.T3376C:p.Y1126H,Zfp236:NM_001374229:exon20:c.T3520C:p.Y1174H"	18qE3	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	2	1	1	0.9990473	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	90	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	118	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	68	24	15	0.625	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	4271293	12A2p6	cell line	sgMsh2	4271293	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	202	9	2	0.222222222	exonic	Ankrd13d	nonsynonymous SNV	Ankrd13d:NM_026720:exon12:c.G1274A:p.S425N	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr19	4281028	12A2p6	cell line	sgMsh2	4281028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	156	8	2	0.25	exonic	Ankrd13d	synonymous SNV	Ankrd13d:NM_026720:exon5:c.G450A:p.R150R	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
M5	chr19	4623890	12A2p6	cell line	sgMsh2	4623890	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	138	50	0	0	exonic	Rce1	frameshift deletion	"Rce1:NM_001368713:exon5:c.315delT:p.H106Tfs*124,Rce1:NM_001368714:exon5:c.315delT:p.H106Tfs*44,Rce1:NM_001368715:exon5:c.315delT:p.H106Tfs*44,Rce1:NM_001368712:exon6:c.627delT:p.H210Tfs*124,Rce1:NM_023131:exon6:c.627delT:p.H210Tfs*44"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.688	73	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	116	1	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	154	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	241	1	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	261	70	3	0.042857143	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	189	1	0	0	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M5	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	111	2	1	0.5	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	5024251	12A2p6	cell line	sgMsh2	5024251	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	92	3	0	0	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon1:c.G3A:p.M1I	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr19	5279489	12A2p6	cell line	sgMsh2	5279489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	113	543	68	0.125230203	exonic	Sf3b2	nonsynonymous SNV	"Sf3b2:NM_001362454:exon17:c.T2155C:p.F719L,Sf3b2:NM_030109:exon17:c.T2158C:p.F720L"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	5336070	12A2p6	cell line	sgMsh2	5336070	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	200	0	0	NA	exonic	Catsper1	frameshift deletion	Catsper1:NM_139301:exon1:c.330delC:p.A113Lfs*181	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr19	5607818	12A2p6	cell line	sgMsh2	5607818	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	217	146	2	0.01369863	exonic	Kat5	stopgain	"Kat5:NM_001362370:exon5:c.C105A:p.Y35X,Kat5:NM_001199248:exon6:c.C681A:p.Y227X,Kat5:NM_001199249:exon6:c.C681A:p.Y227X,Kat5:NM_001362371:exon6:c.C105A:p.Y35X,Kat5:NM_001199247:exon7:c.C582A:p.Y194X,Kat5:NM_001362372:exon7:c.C837A:p.Y279X,Kat5:NM_178637:exon8:c.C738A:p.Y246X"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr19	5660776	12A2p6	cell line	sgMsh2	5660776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	51	26	7	0.269230769	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon2:c.C205T:p.R69C,Sipa1:NM_001164568:exon2:c.C205T:p.R69C,Sipa1:NM_001164480:exon3:c.C205T:p.R69C,Sipa1:NM_011379:exon3:c.C205T:p.R69C,Sipa1:NM_001164481:exon4:c.C205T:p.R69C"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CGG	nonsynonymous	GGGCAC	15	GGGCACGGGCACGGG	NA
M5	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	137	80	22	0.275	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	72	50	12	0.24	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	39	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M5	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	63	125	49	0.392	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	109	252	90	0.357142857	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M5	chr19	6071366	12A2p6	cell line	sgMsh2	6071366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	103	68	6	0.088235294	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon4:c.G625A:p.V209M	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.886181188	1	0.9873093	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	39	13	9	0.692307692	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	3	1	1	0.9820644	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	101	97	30	0.309278351	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	0.9919431	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	6853563	12A2p6	cell line	sgMsh2	6853563	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	115	1	0	0	exonic	Ccdc88b	synonymous SNV	Ccdc88b:NM_001081291:exon14:c.C2010A:p.A670A	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9998458	GGG	synonymous	NA	NA	NA	NA
M5	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	661	107	0.161875946	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.835299971	1	0.9209052	TGC	synonymous	NA	NA	NA	NA
M5	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	61	53	7	0.132075472	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.80137916	1	0.8310358	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	6927164	12A2p6	cell line	sgMsh2	6927164	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	128	2	0	0	exonic	Kcnk4	nonsynonymous SNV	Kcnk4:NM_008431:exon6:c.T731A:p.L244Q	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	2	0.5576317	TAG	nonsynonymous	TAGGC	10	TAGGCTAGGC	NA
M5	chr19	6993489	12A2p6	cell line	sgMsh2	6993489	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.204	284	32	6	0.1875	exonic	Nudt22	synonymous SNV	Nudt22:NM_026675:exon5:c.C712T:p.L238L	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.864980681	1	0.9993843	AGG	synonymous	NA	NA	NA	NA
M5	chr19	7014089	12A2p6	cell line	sgMsh2	7014089	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	69	0	0	NA	exonic	Fermt3	synonymous SNV	"Fermt3:NM_001362399:exon5:c.C654A:p.S218S,Fermt3:NM_153795:exon5:c.C654A:p.S218S"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.758978146	1	8.52E-08	GGG	synonymous	CAGG	8	CAGGCAGG	NA
M5	chr19	7096153	12A2p6	cell line	sgMsh2	7096153	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	84	0	0	NA	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.T1028G:p.V343G	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.860740579	1	0.9596355	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	275	342	89	0.260233918	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	7.66E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	48	7	4	0.571428571	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr19	8820799	12A2p6	cell line	sgMsh2	8820799	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	51	949	306	0.322444679	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon1:c.C518A:p.A173D	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.991479	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr19	8847699	12A2p6	cell line	sgMsh2	8847699	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	120	67	12	0.179104478	exonic	Bscl2	synonymous SNV	"Bscl2:NM_001290823:exon8:c.C846T:p.H282H,Bscl2:NM_008144:exon8:c.C1026T:p.H342H,Bscl2:NM_001136064:exon9:c.C1026T:p.H342H"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.614814699	2	0.9953897	ACG	synonymous	NA	NA	NA	NA
M5	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	83	648	115	0.177469136	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	0.9855537	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr19	8931147	12A2p6	cell line	sgMsh2	8931147	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	141	68	1	0.014705882	exonic	Eml3	frameshift deletion	"Eml3:NM_001374671:exon3:c.295delC:p.P100Lfs*2,Eml3:NM_144872:exon3:c.298delC:p.P101Lfs*2"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr19	8951168	12A2p6	cell line	sgMsh2	8951168	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	116	346	54	0.156069364	exonic	Mta2	synonymous SNV	Mta2:NM_011842:exon17:c.T1725C:p.N575N	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.818339565	1	0.09580473	ATG	synonymous	NA	NA	NA	NA
M5	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	85	61	11	0.180327869	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.644495409	2	0.9285531	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr19	9006308	12A2p6	cell line	sgMsh2	9006308	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	255	509	85	0.166994106	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A4955C:p.N1652T	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.999399	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	233	78	0.334763948	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	9.91E-08	GTC	synonymous	NA	NA	NA	NA
M5	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	268	408	67	0.164215686	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.542732976	2	3.13E-09	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	184	369	62	0.16802168	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.9943091	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	74	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.886181188	1	0.9724941	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	119	30	10	0.333333333	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	0.958262911	1	0.9994325	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	106	42	12	0.285714286	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9997286	GTA	synonymous	NA	NA	NA	NA
M5	chr19	11333215	12A2p6	cell line	sgMsh2	11333215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	172	0	0	NA	exonic	Ms4a7	nonsynonymous SNV	"Ms4a7:NM_001025610:exon2:c.G139T:p.V47F,Ms4a7:NM_001276398:exon2:c.G238T:p.V80F,Ms4a7:NM_027836:exon2:c.G139T:p.V47F"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.606334497	2	0.9998543	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr19	12680523	12A2p6	cell line	sgMsh2	12680523	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	304	0	0	NA	exonic	Olfr1443	synonymous SNV	Olfr1443:NM_146698:exon3:c.A414C:p.T138T	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.9998394	CAT	synonymous	NA	NA	NA	NA
M5	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	480	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	408	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M5	chr19	13165574	12A2p6	cell line	sgMsh2	13165574	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	205	0	0	NA	exonic	Olfr1461	nonsynonymous SNV	Olfr1461:NM_146302:exon1:c.G559A:p.A187T	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.538492875	2	0.9999989	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	13454435	12A2p6	cell line	sgMsh2	13454435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	297	0	0	NA	exonic	Olfr1472	synonymous SNV	Olfr1472:NM_146690:exon1:c.T81C:p.I27I	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.788658856	1	0.6376498	TAA	synonymous	AATA	10	AATAAATAAA	NA
M5	chr19	13586087	12A2p6	cell line	sgMsh2	13586087	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	577	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.C782A:p.P261H	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.754738045	2	0.9984861	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Strelka2;Vardict	2	0.1708	281	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.724209315	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	339	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.64873551	2	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	13814832	12A2p6	cell line	sgMsh2	13814832	-	A	Insertion	Strelka2;Vardict	2	0.1818	176	0	0	NA	exonic	Olfr1499	frameshift insertion	Olfr1499:NM_146796:exon1:c.756dupT:p.G253Wfs*19	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.77085043	NA	NA	CCA	frameshift	A	8	AAAAAAAA	1
M5	chr19	13838377	12A2p6	cell line	sgMsh2	13838377	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	229	0	0	NA	exonic	Olfr1501	frameshift deletion	Olfr1501:NM_146633:exon1:c.795delA:p.K265Nfs*15	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.559693382	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5	chr19	14596822	12A2p6	cell line	sgMsh2	14596822	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	121	5	0	0	exonic	Tle4	synonymous SNV	"Tle4:NM_001302947:exon2:c.T78C:p.F26F,Tle4:NM_001302950:exon2:c.T78C:p.F26F,Tle4:NM_001302951:exon2:c.T72C:p.F24F,Tle4:NM_011600:exon2:c.T78C:p.F26F"	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.525772571	2	0.9996575	TAA	synonymous	NA	NA	NA	NA
M5	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	202	318	109	0.342767296	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999993	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	293	96	17	0.177083333	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.725057335	2	0.994799	TAC	synonymous	NA	NA	NA	NA
M5	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	42	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.742017741	1	0.6900212	AAG	synonymous	NA	NA	NA	NA
M5	chr19	18854204	12A2p6	cell line	sgMsh2	18854204	A	-	Deletion	Strelka2;Vardict	2	0.2037	162	0	0	NA	exonic	Trpm6	frameshift deletion	Trpm6:NM_153417:exon26:c.4432delA:p.K1480Sfs*78	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.86370865	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M5	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	159	89	16	0.179775281	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	3	1	1	0.9999903	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	103	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9996723	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr19	25427981	12A2p6	cell line	sgMsh2	25427981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	60	29	4	0.137931034	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon9:c.T3116C:p.I1039T,Kank1:NM_181404:exon10:c.T3362C:p.I1121T"	19qB	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.758978146	1	0.6891458	ATC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M5	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	218	410	147	0.358536585	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999998	CTC	synonymous	NA	NA	NA	NA
M5	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	181	3	0	0	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999976	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr19	30578787	12A2p6	cell line	sgMsh2	30578787	-	T	Insertion	Strelka2;Vardict	2	0.1897	174	1	0	0	exonic	Prkg1	frameshift insertion	"Prkg1:NM_001013833:exon15:c.1757dupA:p.N586Kfs*3,Prkg1:NM_011160:exon15:c.1802dupA:p.N601Kfs*3"	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.804347231	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5	chr19	31585637	12A2p6	cell line	sgMsh2	31585637	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	132	0	0	NA	exonic	Prkg1	frameshift deletion	"Prkg1:NM_001013833:exon2:c.363delC:p.V122Wfs*33,Prkg1:NM_011160:exon2:c.408delC:p.V137Wfs*33"	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.559693382	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	96	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9994914	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	253	53	5	0.094339623	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	1.49E-08	GTG	synonymous	NA	NA	NA	NA
M5	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	83	43	7	0.162790698	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.67841622	2	0.8301508	TAG	synonymous	NA	NA	NA	NA
M5	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	285	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	4.55E-09	TAC	synonymous	NA	NA	NA	NA
M5	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	256	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.669936017	2	0.9998508	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	34112952	12A2p6	cell line	sgMsh2	34112952	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	239	0	0	NA	exonic	Lipm	frameshift deletion	Lipm:NM_023903:exon5:c.532delA:p.K179Rfs*23	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.636015206	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5	chr19	34620011	12A2p6	cell line	sgMsh2	34620011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	287	0	0	NA	exonic	Ifit1bl2	synonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.C204T:p.Y68Y,Ifit1bl2:NM_053217:exon3:c.C204T:p.Y68Y"	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	4.13E-09	CGT	synonymous	NA	NA	NA	NA
M5	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	95	8	3	0.375	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9994585	GTG	synonymous	NA	NA	NA	NA
M5	chr19	36089200	12A2p6	cell line	sgMsh2	36089200	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	270	94	11	0.117021277	exonic	Rpp30	nonsynonymous SNV	Rpp30:NM_019428:exon5:c.A332C:p.K111T	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.593614193	2	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	149	142	47	0.330985915	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999818	CAG	synonymous	NA	NA	NA	NA
M5	chr19	36440012	12A2p6	cell line	sgMsh2	36440012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	230	104	15	0.144230769	exonic	Pcgf5	nonsynonymous SNV	"Pcgf5:NM_001368690:exon6:c.G339T:p.K113N,Pcgf5:NM_001368691:exon6:c.G339T:p.K113N,Pcgf5:NM_001368692:exon6:c.G339T:p.K113N,Pcgf5:NM_001368693:exon6:c.G339T:p.K113N,Pcgf5:NM_029508:exon6:c.G339T:p.K113N"	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.9878781	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	201	85	22	0.258823529	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999993	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	107	16	0.14953271	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	0.999994	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr19	38097545	12A2p6	cell line	sgMsh2	38097545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	57	138	16	0.115942029	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T419C:p.I140T	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	0.00094882	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	338	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	1.13E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	142	49	13	0.265306122	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999717	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	116	37	1	0.027027027	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9998552	CTG	synonymous	NA	NA	NA	NA
M5	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	205	1815	671	0.36969697	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999995	GAC	synonymous	NA	NA	NA	NA
M5	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	28	1	0	0	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9648342	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	247	40	0.16194332	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.903141593	1	0.9845302	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr19	42759764	12A2p6	cell line	sgMsh2	42759764	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	35	52	18	0.346153846	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon16:c.A1697C:p.N566T,Hps1:NM_001346703:exon17:c.A1721C:p.N574T,Hps1:NM_019424:exon17:c.A1697C:p.N566T"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	4	1	1	0.9770586	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	79	57	11	0.192982456	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9985219	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	37	41	17	0.414634146	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9797122	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr19	44012394	12A2p6	cell line	sgMsh2	44012394	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	204	1	0	0	exonic	Cyp2c23	synonymous SNV	"Cyp2c23:NM_001001446:exon7:c.C1050A:p.P350P,Cyp2c23:NM_001167905:exon7:c.C1050A:p.P350P"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.58513399	2	0.9999945	AGG	synonymous	NA	NA	NA	NA
M5	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	419	98	19	0.193877551	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	2.36E-09	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	116	168	50	0.297619048	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9998552	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	121	175	33	0.188571429	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.814099464	1	0.8922546	AAG	synonymous	NA	NA	NA	NA
M5	chr19	45024867	12A2p6	cell line	sgMsh2	45024867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	31	68	13	0.191176471	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon4:c.A1220G:p.Q407R,Lzts2:NM_001130526:exon4:c.A1220G:p.Q407R,Lzts2:NM_145503:exon4:c.A1220G:p.Q407R"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.903141593	1	0.9282832	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	73	29	8	0.275862069	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.390089327	2	0.6607927	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	56	9	3	0.333333333	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9937614	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	82	203	60	0.295566502	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9987755	CTT	synonymous	NA	NA	NA	NA
M5	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	151	304	29	0.095394737	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	0.999872	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	209	50	9	0.18	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.767458349	2	0.6292124	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	213	173	41	0.23699422	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	47651833	12A2p6	cell line	sgMsh2	47651833	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	146	0	0	NA	exonic	Col17a1	nonsynonymous SNV	"Col17a1:NM_001290825:exon44:c.C3092T:p.P1031L,Col17a1:NM_007732:exon44:c.C3092T:p.P1031L"	19qD1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.999978	GGG	nonsynonymous	G	5	GGGGG	NA
M5	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	100	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.864980681	1	0.9736358	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	172	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.937062404	1	0.9998728	GTG	synonymous	NA	NA	NA	NA
M5	chr19	52264739	12A2p6	cell line	sgMsh2	52264739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	120	0	0	NA	exonic	Ins1	nonsynonymous SNV	Ins1:NM_008386:exon2:c.T116C:p.L39P	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.869220782	1	0.9849241	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr19	52264767	12A2p6	cell line	sgMsh2	52264767	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.112	111	0	0	NA	exonic	Ins1	synonymous SNV	Ins1:NM_008386:exon2:c.C144T:p.F48F	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.474891354	2	0.9924178	TCT	synonymous	CTT	8	CTTCTTCT	NA
M5	chr19	53909279	12A2p6	cell line	sgMsh2	53909279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	120	360	71	0.197222222	exonic	Pdcd4	nonsynonymous SNV	"Pdcd4:NM_001168491:exon3:c.T211C:p.S71P,Pdcd4:NM_001168492:exon3:c.T211C:p.S71P,Pdcd4:NM_011050:exon3:c.T211C:p.S71P"	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.763218248	1	0.5494532	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr19	54046882	12A2p6	cell line	sgMsh2	54046882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	73	7	1	0.142857143	exonic	Adra2a	nonsynonymous SNV	Adra2a:NM_007417:exon1:c.C668A:p.P223H	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.55545328	2	0.9817919	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	138	41	6	0.146341463	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.483371557	2	0.9976392	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	139	1099	249	0.226569609	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.695376626	2	0.9510732	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	102	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	0.9996511	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M5	chr19	58787617	12A2p6	cell line	sgMsh2	58787617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	151	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon4:c.A379G:p.T127A,1700019N19Rik:NM_001368689:exon4:c.A379G:p.T127A,1700019N19Rik:NM_026208:exon4:c.A403G:p.T135A"	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.58513399	2	0.9998095	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	200	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.809859363	1	0.09842798	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	234	25	4	0.16	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9999778	GAT	synonymous	NA	NA	NA	NA
M5	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Strelka2;Vardict	2	0.1928	83	74	4	0.054054054	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	1	0.817491545	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M5	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	244	123	41	0.333333333	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.99	4.197700362	NA	2	1	1	4.77E-08	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M5	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	133	71	20	0.281690141	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	93	8	3	0.375	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	121	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9994863	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	12174185	12A2p6	cell line	sgMsh2	12174185	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	218	0	0	NA	exonic	Itga8	synonymous SNV	Itga8:NM_001001309:exon23:c.C2337T:p.N779N	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	TGT	synonymous	NA	NA	NA	NA
M5	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	191	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9854096	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	62	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	AAG	synonymous	NA	NA	NA	NA
M5	chr2	17443819	12A2p6	cell line	sgMsh2	17443819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	101	0	0	NA	exonic	Nebl	nonsynonymous SNV	Nebl:NM_001362722:exon6:c.T376C:p.Y126H	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.691136524	2	0.8659398	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	63	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.09422504	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	21827331	12A2p6	cell line	sgMsh2	21827331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	108	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.C3241T:p.R1081C	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9937154	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	117	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	22834366	12A2p6	cell line	sgMsh2	22834366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	180	0	0	NA	exonic	Apbb1ip	synonymous SNV	Apbb1ip:NM_019456:exon6:c.C651T:p.D217D	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999917	ACT	synonymous	NA	NA	NA	NA
M5	chr2	23511388	12A2p6	cell line	sgMsh2	23511388	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	141	50	16	0.32	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon11:c.A882C:p.E294D,Spopl:NM_029773:exon11:c.A1107C:p.E369D,Spopl:NM_001165997:exon12:c.A882C:p.E294D"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999699	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	24443096	12A2p6	cell line	sgMsh2	24443096	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.307	60	0	0	NA	exonic	Pax8	frameshift deletion	Pax8:NM_011040:exon4:c.233delG:p.G78Afs*14	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	82	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	67	95	20	0.210526316	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	101	135	30	0.222222222	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996285	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	62	1	0	0	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.5129565	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	54	20	4	0.2	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.716577132	1	6.25E-06	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	76	1	1	1	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	93	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.568173584	2	0.9942911	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	26473734	12A2p6	cell line	sgMsh2	26473734	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	93	31	6	0.193548387	exonic	Notch1	nonsynonymous SNV	Notch1:NM_008714:exon17:c.A2687C:p.Q896P	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9988844	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	26988391	12A2p6	cell line	sgMsh2	26988391	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	314	0	0	NA	exonic	Adamts13	synonymous SNV	"Adamts13:NM_001001322:exon15:c.C1773T:p.V591V,Adamts13:NM_001290463:exon15:c.C1773T:p.V591V,Adamts13:NM_001290464:exon15:c.C1773T:p.V591V,Adamts13:NM_001290465:exon15:c.C1773T:p.V591V"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	1.57E-09	TCA	synonymous	NA	NA	NA	NA
M5	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	92	38	8	0.210526316	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9807892	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	192	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999988	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	50	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.9909316	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	70	46	7	0.152173913	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M5	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	58	45	7	0.155555556	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	AAC	synonymous	NA	NA	NA	NA
M5	chr2	30083129	12A2p6	cell line	sgMsh2	30083129	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	168	55	2	0.036363636	exonic	Pkn3	frameshift deletion	Pkn3:NM_153805:exon8:c.1050delT:p.F351Lfs*28	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.941302505	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	67	6	2	0.333333333	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.9968642	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	54	46	24	0.52173913	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.9929322	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr2	30368944	12A2p6	cell line	sgMsh2	30368944	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	31	23	3	0.130434783	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon3:c.C164T:p.T55I,Miga2:NM_001378906:exon3:c.C164T:p.T55I,Miga2:NM_001378907:exon3:c.C164T:p.T55I,Miga2:NM_175392:exon3:c.C164T:p.T55I"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9567028	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	98	35	0.357142857	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999924	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	63	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	9.98E-09	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	31615612	12A2p6	cell line	sgMsh2	31615612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	54	107	29	0.271028037	exonic	Fubp3	nonsynonymous SNV	"Fubp3:NM_001363080:exon17:c.A1616G:p.Q539R,Fubp3:NM_001363081:exon17:c.A1217G:p.Q406R,Fubp3:NM_001033389:exon18:c.A1688G:p.Q563R,Fubp3:NM_001290548:exon18:c.A1688G:p.Q563R,Fubp3:NM_001363079:exon18:c.A1685G:p.Q562R"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9929322	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	174	824	157	0.190533981	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999962	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	174	92	25	0.27173913	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999816	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	32396335	12A2p6	cell line	sgMsh2	32396335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	8	11	2	0.181818182	exonic	Ptges2	nonsynonymous SNV	Ptges2:NM_133783:exon1:c.G61A:p.G21R	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.8860264	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	104	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	100	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9879341	CAC	synonymous	NA	NA	NA	NA
M5	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	68	36	9	0.25	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.9970545	CAT	synonymous	NA	NA	NA	NA
M5	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	66	185	38	0.205405405	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	175	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.990866	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	105	39	10	0.256410256	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.999711	GAG	synonymous	NA	NA	NA	NA
M5	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	64	44	11	0.25	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M5	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	75	83	24	0.289156627	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	35661625	12A2p6	cell line	sgMsh2	35661625	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	14	15	5	0.333333333	exonic	Dab2ip	nonsynonymous SNV	"Dab2ip:NM_001114124:exon3:c.G362A:p.R121K,Dab2ip:NM_001114125:exon3:c.G278A:p.R93K,Dab2ip:NM_001290637:exon3:c.G191A:p.R64K"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	2	1	1	0.9192162	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	35715376	12A2p6	cell line	sgMsh2	35715376	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	73	62	11	0.177419355	exonic	Dab2ip	nonsynonymous SNV	"Dab2ip:NM_001001602:exon7:c.T1373A:p.L458H,Dab2ip:NM_001290639:exon7:c.T1196A:p.L399H,Dab2ip:NM_001290640:exon7:c.T1337A:p.L446H,Dab2ip:NM_001114124:exon9:c.T1568A:p.L523H,Dab2ip:NM_001114125:exon9:c.T1484A:p.L495H,Dab2ip:NM_001290637:exon9:c.T1397A:p.L466H,Dab2ip:NM_001290641:exon9:c.T1196A:p.L399H"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	36869924	12A2p6	cell line	sgMsh2	36869924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	241	0	0	NA	exonic	Olfr352	synonymous SNV	Olfr352:NM_146940:exon1:c.C357A:p.T119T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CCT	synonymous	NA	NA	NA	NA
M5	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	139	65	17	0.261538462	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9992371	AAC	nonsynonymous	A	5	AAAAA	NA
M5	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	124	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9977103	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	40677586	12A2p6	cell line	sgMsh2	40677586	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	92	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon79:c.G12128T:p.W4043L	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.208	136	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.881941086	NA	NA	AAT	frameshift	T	5	TTTTT	1
M5	chr2	40928017	12A2p6	cell line	sgMsh2	40928017	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	65	0	0	NA	exonic	Lrp1b	frameshift deletion	Lrp1b:NM_053011:exon44:c.7200delT:p.I2400Mfs*54	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	75	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M5	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	62	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	GTG	synonymous	NA	NA	NA	NA
M5	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	61	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9899296	GAG	synonymous	NA	NA	NA	NA
M5	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	62	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	87	219	50	0.228310502	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991052	AAA	synonymous	A	5	AAAAA	NA
M5	chr2	52090195	12A2p6	cell line	sgMsh2	52090195	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	221	68	14	0.205882353	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon13:c.T1403A:p.I468N,Rif1:NM_001355415:exon13:c.T1382A:p.I461N,Rif1:NM_175238:exon13:c.T1403A:p.I468N"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9999106	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	52209455	12A2p6	cell line	sgMsh2	52209455	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	191	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon94:c.A14382G:p.E4794E	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999987	CTT	synonymous	CCTT	8	CCTTCCTT	NA
M5	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	232	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	63	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	58287755	12A2p6	cell line	sgMsh2	58287755	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	154	0	0	NA	exonic	Acvr1c	nonsynonymous SNV	"Acvr1c:NM_001033369:exon3:c.G311A:p.R104H,Acvr1c:NM_001111030:exon4:c.G701A:p.R234H"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999867	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	124	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999124	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	45	157	18	0.114649682	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9876267	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	59815484	12A2p6	cell line	sgMsh2	59815484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	142	78	18	0.230769231	exonic	Tanc1	nonsynonymous SNV	"Tanc1:NM_001290659:exon16:c.A2879G:p.N960S,Tanc1:NM_198294:exon17:c.A2900G:p.N967S"	2qC1.1	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999717	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	60653288	12A2p6	cell line	sgMsh2	60653288	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	125	20	1	0.05	exonic	Itgb6	nonsynonymous SNV	"Itgb6:NM_021359:exon6:c.C775T:p.R259C,Itgb6:NM_001159564:exon9:c.C775T:p.R259C"	2qC1.2	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.775938552	1	0.6546736	CGC	nonsynonymous	GCCA	8	GCCAGCCA	NA
M5	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	169	2	0	0	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999948	ACT	synonymous	NA	NA	NA	NA
M5	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	105	6	2	0.333333333	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M5	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	137	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	GTT	synonymous	NA	NA	NA	NA
M5	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.289	171	5	0	0	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999954	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.291	172	5	0	0	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M5	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	142	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999717	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	67510449	12A2p6	cell line	sgMsh2	67510449	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	168	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.C3033T:p.C1011C,Xirp2:NM_001083919:exon7:c.C3033T:p.C1011C"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999945	GCA	synonymous	NA	NA	NA	NA
M5	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	230	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.856500478	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr2	67515299	12A2p6	cell line	sgMsh2	67515299	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	150	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7883T:p.Q2628L,Xirp2:NM_001083919:exon7:c.A7883T:p.Q2628L"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999332	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	67517005	12A2p6	cell line	sgMsh2	67517005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T9589G:p.S3197A,Xirp2:NM_001083919:exon7:c.T9589G:p.S3197A"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.00999223	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	232	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	69397705	12A2p6	cell line	sgMsh2	69397705	A	-	Deletion	Strelka2;Vardict	2	0.2237	152	18	2	0.111111111	exonic	Dhrs9	frameshift deletion	Dhrs9:NM_175512:exon4:c.662delA:p.K223Nfs*27	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.948510678	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	259	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	1.92E-08	TAT	synonymous	NA	NA	NA	NA
M5	chr2	73819067	12A2p6	cell line	sgMsh2	73819067	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	170	145	44	0.303448276	exonic	Atf2	nonsynonymous SNV	"Atf2:NM_001284373:exon12:c.G1025A:p.S342N,Atf2:NM_001284374:exon12:c.G614A:p.S205N,Atf2:NM_001284369:exon13:c.G1199A:p.S400N,Atf2:NM_001284372:exon13:c.G1025A:p.S342N,Atf2:NM_009715:exon14:c.G1199A:p.S400N,Atf2:NM_001025093:exon15:c.G1319A:p.S440N,Atf2:NM_001284376:exon15:c.G1178A:p.S393N"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.640255308	2	0.9990013	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	23	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9524732	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	82	2	0	0	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	AGC	synonymous	NA	NA	NA	NA
M5	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	115	111	25	0.225225225	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	76716984	12A2p6	cell line	sgMsh2	76716984	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	207	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon182:c.G71736A:p.Q23912Q,Ttn:NM_011652:exon303:c.G91479A:p.Q30493Q,Ttn:NM_001385708:exon340:c.G97311A:p.Q32437Q"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	0.640255308	2	0.9998415	ACT	synonymous	NA	NA	NA	NA
M5	chr2	76871867	12A2p6	cell line	sgMsh2	76871867	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	24	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon100:c.A25692C:p.G8564G,Ttn:NM_001385708:exon102:c.A28749C:p.G9583G"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9552378	ATC	synonymous	NA	NA	NA	NA
M5	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	143	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999734	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	77896385	12A2p6	cell line	sgMsh2	77896385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	132	90	24	0.266666667	exonic	Cwc22	synonymous SNV	"Cwc22:NM_001290740:exon20:c.T2334C:p.D778D,Cwc22:NM_001362657:exon20:c.T2352C:p.D784D,Cwc22:NM_001362658:exon20:c.T2349C:p.D783D,Cwc22:NM_172667:exon20:c.T2331C:p.D777D,Cwc22:NM_001362659:exon21:c.T2331C:p.D777D,Cwc22:NM_030560:exon21:c.T2349C:p.D783D"	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.999947	GAT	synonymous	NA	NA	NA	NA
M5	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	226	1	0	0	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	TAT	synonymous	NA	NA	NA	NA
M5	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	62	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	2	1	1	0.995712	CTA	synonymous	NA	NA	NA	NA
M5	chr2	82259246	12A2p6	cell line	sgMsh2	82259246	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	131	0	0	NA	exonic	Zfp804a	stopgain	Zfp804a:NM_175513:exon4:c.G3418T:p.G1140X	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.860740579	1	0.9832514	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	174	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.780178653	1	0.6253913	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	82982296	12A2p6	cell line	sgMsh2	82982296	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	202	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.C8952T:p.L2984L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.636015206	2	0.9998445	TCG	synonymous	NA	NA	NA	NA
M5	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	527	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.797139059	1	0.7683163	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M5	chr2	82990905	12A2p6	cell line	sgMsh2	82990905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	216	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16975G:p.S5659G	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.907381694	1	0.9998581	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	83801865	12A2p6	cell line	sgMsh2	83801865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	243	208	5	0.024038462	exonic	Itgav	stopgain	Itgav:NM_008402:exon27:c.G2790A:p.W930X	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.80137916	1	0.847118	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	3	0	0	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.80137916	1	0.8430024	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	83923588	12A2p6	cell line	sgMsh2	83923588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	177	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon5:c.A727G:p.I243V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.937062404	1	0.9998975	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr2	84667326	12A2p6	cell line	sgMsh2	84667326	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	194	3	1	0.333333333	exonic	Btbd18	nonsynonymous SNV	Btbd18:NM_001145100:exon5:c.T1307C:p.V436A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.699616727	2	0.9889961	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	147	260	70	0.269230769	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.530012672	2	0.9999409	TTG	synonymous	NA	NA	NA	NA
M5	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	174	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.712337031	2	0.9601466	GTG	synonymous	NA	NA	NA	NA
M5	chr2	85648260	12A2p6	cell line	sgMsh2	85648260	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	225	0	0	NA	exonic	Olfr1002	frameshift deletion	Olfr1002:NM_146573:exon1:c.60delC:p.F21Sfs*8	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.835299971	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M5	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	360	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	1	1.03E-09	AGG	synonymous	NA	NA	NA	NA
M5	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	341	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.958262911	1	1.01E-08	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr2	85777152	12A2p6	cell line	sgMsh2	85777152	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.216	312	0	0	NA	exonic	Olfr1014	frameshift insertion	Olfr1014:NM_146569:exon1:c.568dupA:p.K192Efs*77	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	NA	NA	GCA	frameshift	A	5	AAAAA	1
M5	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	229	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.750497943	2	0.8747467	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	85951347	12A2p6	cell line	sgMsh2	85951347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	81	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.A283G:p.I95V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.818339565	1	0.8845286	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	85951575	12A2p6	cell line	sgMsh2	85951575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	216	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T511C:p.S171P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	1	0.99992	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	85976178	12A2p6	cell line	sgMsh2	85976178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	403	0	0	NA	exonic	Olfr1029	nonsynonymous SNV	Olfr1029:NM_001011852:exon1:c.A934G:p.T312A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.869220782	1	0.9999688	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	85983993	12A2p6	cell line	sgMsh2	85983993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	154	0	0	NA	exonic	Olfr1030	nonsynonymous SNV	Olfr1030:NM_146588:exon2:c.T152C:p.M51T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.949782708	1	0.9998503	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr2	86217093	12A2p6	cell line	sgMsh2	86217093	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	167	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.T616C:p.S206P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.788658856	1	0.7305815	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	287	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.805619261	1	0.8930077	AAA	synonymous	NA	NA	NA	NA
M5	chr2	86423160	12A2p6	cell line	sgMsh2	86423160	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	373	0	0	NA	exonic	Olfr1062	nonsynonymous SNV	Olfr1062:NM_147078:exon1:c.A515T:p.N172I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.852260377	1	0.9995638	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr2	86508848	12A2p6	cell line	sgMsh2	86508848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	194	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.C388T:p.L130F	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.534252773	2	0.9999971	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr2	86553750	12A2p6	cell line	sgMsh2	86553750	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	418	0	0	NA	exonic	Olfr1080	nonsynonymous SNV	Olfr1080:NM_146409:exon2:c.G373T:p.A125S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.80137916	1	0.8613773	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	86786394	12A2p6	cell line	sgMsh2	86786394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	262	0	0	NA	exonic	Olfr1093	synonymous SNV	"Olfr1093:NM_001368206:exon2:c.T663C:p.V221V,Olfr1093:NM_146366:exon3:c.T663C:p.V221V"	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	1	0.9999851	TTA	synonymous	NA	NA	NA	NA
M5	chr2	87002837	12A2p6	cell line	sgMsh2	87002837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	248	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.T867G:p.F289L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.809859363	1	0.9147951	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	235	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.89466139	1	0.9998099	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr2	87388088	12A2p6	cell line	sgMsh2	87388088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	272	0	0	NA	exonic	Olfr1122	nonsynonymous SNV	Olfr1122:NM_147031:exon1:c.A382G:p.T128A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.911621796	1	0.9999851	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	87418268	12A2p6	cell line	sgMsh2	87418268	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	208	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.219delT:p.S77Afs*10	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.83105987	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr2	87457903	12A2p6	cell line	sgMsh2	87457903	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	431	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.C737T:p.T246I	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.818339565	1	0.9840629	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr2	87545112	12A2p6	cell line	sgMsh2	87545112	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	361	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.T431A:p.L144H	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.657215713	2	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	197	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.860740579	1	0.9952361	AGG	synonymous	NA	NA	NA	NA
M5	chr2	87635233	12A2p6	cell line	sgMsh2	87635233	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	148	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C513A:p.S171S	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	1	0.9999806	TGG	synonymous	NA	NA	NA	NA
M5	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.175	307	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.742017741	NA	NA	CAT	frameshift	NA	NA	NA	1
M5	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	240	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.814099464	1	0.9349691	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	175	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.754738045	2	0.708237	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	255	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.949782708	1	0.9999987	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	87810610	12A2p6	cell line	sgMsh2	87810610	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	250	0	0	NA	exonic	Olfr1145	synonymous SNV	Olfr1145:NM_146320:exon1:c.G789T:p.L263L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.754738045	2	0.8735256	TGG	synonymous	TGG	10	TGGTGGTGGT	NA
M5	chr2	87857290	12A2p6	cell line	sgMsh2	87857290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	172	0	0	NA	exonic	Olfr1151	synonymous SNV	Olfr1151:NM_146638:exon1:c.T114C:p.T38T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.881941086	1	0.9975331	CTC	synonymous	NA	NA	NA	NA
M5	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	451	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.83105987	1	0.9976187	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	264	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.869220782	1	0.9993456	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	87990266	12A2p6	cell line	sgMsh2	87990266	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	431	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.A154T:p.S52C	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.657215713	2	2.35E-08	CAG	nonsynonymous	CAGT	9	CAGTCAGTC	NA
M5	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	369	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.763218248	2	0.9316481	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	208	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.898901492	1	0.999677	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	88093684	12A2p6	cell line	sgMsh2	88093684	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	176	0	0	NA	exonic	Olfr1164	nonsynonymous SNV	Olfr1164:NM_146641:exon1:c.G251A:p.C84Y	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.962503012	1	0.9999736	GCA	nonsynonymous	A	5	AAAAA	NA
M5	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	440	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.669936017	2	0.9999999	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	283	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.877700985	1	0.9997962	CTG	synonymous	NA	NA	NA	NA
M5	chr2	88677892	12A2p6	cell line	sgMsh2	88677892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	134	0	0	NA	exonic	Olfr1193	synonymous SNV	Olfr1193:NM_001011517:exon1:c.T36C:p.N12N	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.822579667	1	0.9262104	ATA	synonymous	NA	NA	NA	NA
M5	chr2	88678110	12A2p6	cell line	sgMsh2	88678110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	189	0	0	NA	exonic	Olfr1193	nonsynonymous SNV	Olfr1193:NM_001011517:exon1:c.A254G:p.K85R	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.839540072	1	0.980811	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	232	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.864980681	1	0.9982086	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	88728850	12A2p6	cell line	sgMsh2	88728850	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.218	372	0	0	NA	exonic	Olfr1197	frameshift insertion	Olfr1197:NM_001005225:exon1:c.747dupT:p.G250Wfs*13	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.9243421	NA	NA	CCA	frameshift	A	5	AAAAA	1
M5	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	412	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.881941086	1	0.999995	CTA	synonymous	ACT	8	ACTACTAC	NA
M5	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	319	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.852260377	1	0.9989329	AGG	synonymous	NA	NA	NA	NA
M5	chr2	88756331	12A2p6	cell line	sgMsh2	88756331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	285	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.C343A:p.L115I,Olfr1199:NM_146458:exon2:c.C343A:p.L115I"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.848020275	1	0.9972676	AGG	nonsynonymous	AGGATA	13	AGGATAAGGATAA	NA
M5	chr2	88756434	12A2p6	cell line	sgMsh2	88756434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	253	0	0	NA	exonic	Olfr1199	synonymous SNV	"Olfr1199:NM_001368212:exon2:c.T240C:p.I80I,Olfr1199:NM_146458:exon2:c.T240C:p.I80I"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.712337031	2	0.9951871	CAA	synonymous	NA	NA	NA	NA
M5	chr2	88794769	12A2p6	cell line	sgMsh2	88794769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	450	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.G386A:p.R129H	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.911621796	1	2.95E-08	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr2	88958925	12A2p6	cell line	sgMsh2	88958925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	338	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.T458C:p.L153S	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.669936017	2	0.9999946	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	278	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.77169845	2	0.6999903	TAA	synonymous	NA	NA	NA	NA
M5	chr2	89303195	12A2p6	cell line	sgMsh2	89303195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	148	0	0	NA	exonic	Olfr1231	synonymous SNV	Olfr1231:NM_146454:exon1:c.T396C:p.H132H	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.937062404	1	0.999642	AAT	synonymous	NA	NA	NA	NA
M5	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	159	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.937062404	1	0.9997772	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	229	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.797139059	1	0.8020445	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	221	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	89881051	12A2p6	cell line	sgMsh2	89881051	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	276	0	0	NA	exonic	Olfr1257	nonsynonymous SNV	Olfr1257:NM_146982:exon1:c.G224T:p.S75I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.89466139	1	0.9999441	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	240	158	33	0.208860759	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	265	722	140	0.193905817	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.682656321	2	0.9997025	TTG	synonymous	NA	NA	NA	NA
M5	chr2	91065599	12A2p6	cell line	sgMsh2	91065599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	114	31	2	0.064516129	exonic	Slc39a13	nonsynonymous SNV	"Slc39a13:NM_001290765:exon4:c.A556G:p.K186E,Slc39a13:NM_026721:exon4:c.A517G:p.K173E"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.881941086	1	0.9890346	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	91154700	12A2p6	cell line	sgMsh2	91154700	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	175	52	5	0.096153846	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon25:c.A3928T:p.M1310L,Madd:NM_145527:exon26:c.A3928T:p.M1310L,Madd:NM_001177719:exon27:c.A3985T:p.M1329L"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	1	0.9999964	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	293	48	15	0.3125	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	2	1	1	3.15E-09	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	91169815	12A2p6	cell line	sgMsh2	91169815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	68	37	4	0.108108108	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon9:c.A1745G:p.Y582C,Madd:NM_001177719:exon10:c.A1745G:p.Y582C,Madd:NM_145527:exon10:c.A1745G:p.Y582C"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.70809693	2	0.59571	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	178	52	6	0.115384615	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.907381694	1	0.999487	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	91505634	12A2p6	cell line	sgMsh2	91505634	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	151	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon35:c.C5129T:p.S1710F	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	0.915861897	1	0.9991438	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	91770923	12A2p6	cell line	sgMsh2	91770923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	150	78	15	0.192307692	exonic	Ambra1	synonymous SNV	"Ambra1:NM_001080754:exon6:c.T564C:p.F188F,Ambra1:NM_172669:exon6:c.T564C:p.F188F"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	2	1	1	0.9999829	TTG	synonymous	NA	NA	NA	NA
M5	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	91	61	11	0.180327869	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	2	1	1	0.9993039	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	94377654	12A2p6	cell line	sgMsh2	94377654	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	113	45	11	0.244444444	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon5:c.T610G:p.L204V,Ttc17:NM_001355691:exon5:c.T610G:p.L204V,Ttc17:NM_183106:exon5:c.T610G:p.L204V"	2qE1	chr2-82235500-94430128	5	3	2	0.99	4.197700362	NA	1	1	1	0.9998251	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	216	84	15	0.178571429	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	106372412	12A2p6	cell line	sgMsh2	106372412	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	125	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon18:c.C1722A:p.G574G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	GCT	synonymous	NA	NA	NA	NA
M5	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	212	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr2	107296108	12A2p6	cell line	sgMsh2	107296108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	162	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A1186G:p.S396G	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999919	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	110794942	12A2p6	cell line	sgMsh2	110794942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	163	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon2:c.A124G:p.R42G,Ano3:NM_001128103:exon5:c.A562G:p.R188G,Ano3:NM_001355245:exon5:c.A562G:p.R188G"	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9940631	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	110794971	12A2p6	cell line	sgMsh2	110794971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	161	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon2:c.A95G:p.D32G,Ano3:NM_001128103:exon5:c.A533G:p.D178G,Ano3:NM_001355245:exon5:c.A533G:p.D178G"	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999914	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	67	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9968642	CAT	synonymous	NA	NA	NA	NA
M5	chr2	111335393	12A2p6	cell line	sgMsh2	111335393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	490	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C684A:p.R228R	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M5	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.277	560	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	504	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M5	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	306	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9999987	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M5	chr2	111379900	12A2p6	cell line	sgMsh2	111379900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	202	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.A899G:p.K300R	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	193	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	193	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	AAT	synonymous	NA	NA	NA	NA
M5	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	212	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	111912707	12A2p6	cell line	sgMsh2	111912707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	273	0	0	NA	exonic	Olfr1306	synonymous SNV	Olfr1306:NM_001011803:exon1:c.T222C:p.S74S	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
M5	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	263	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	1.51E-08	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	112008392	12A2p6	cell line	sgMsh2	112008392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	97	0	0	NA	exonic	Olfr1310	nonsynonymous SNV	Olfr1310:NM_146449:exon1:c.T793C:p.S265P	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8810823	GAT	nonsynonymous	GATGT	10	GATGTGATGT	NA
M5	chr2	112241488	12A2p6	cell line	sgMsh2	112241488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	110	131	30	0.229007634	exonic	Lpcat4	nonsynonymous SNV	Lpcat4:NM_207206:exon2:c.T152C:p.V51A	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9955937	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	106	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	1	0.9997286	AAC	nonsynonymous	A	5	AAAAA	NA
M5	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	117	49	17	0.346938776	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9994633	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	146	184	44	0.239130435	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	118461764	12A2p6	cell line	sgMsh2	118461764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	66	15	0.227272727	exonic	Eif2ak4	nonsynonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3224G:p.D1075G,Eif2ak4:NM_001177806:exon27:c.A3458G:p.D1153G,Eif2ak4:NM_013719:exon28:c.A3794G:p.D1265G"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997752	GAT	nonsynonymous	G	5	GGGGG	NA
M5	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	110	64	13	0.203125	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997889	CAC	synonymous	NA	NA	NA	NA
M5	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	61	17	5	0.294117647	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	0.5468232	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	27	2	0	0	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9626395	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	118917218	12A2p6	cell line	sgMsh2	118917218	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	46	14	0.304347826	exonic	Bahd1	synonymous SNV	Bahd1:NM_001045523:exon2:c.T1317C:p.N439N	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9312096	ATG	synonymous	NA	NA	NA	NA
M5	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.2348	132	37	3	0.081081081	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.995575803	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M5	chr2	119156519	12A2p6	cell line	sgMsh2	119156519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	35	13	1	0.076923077	exonic	Rmdn3	nonsynonymous SNV	Rmdn3:NM_001033136:exon2:c.G26A:p.G9D	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7774308	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	59	42	5	0.119047619	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	1	0.9948274	TAT	synonymous	NA	NA	NA	NA
M5	chr2	119332788	12A2p6	cell line	sgMsh2	119332788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	84	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon9:c.G1889A:p.G630E	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	1	0.9989199	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	52	59	12	0.203389831	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	41	19	8	0.421052632	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.686896423	1	9.63E-05	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	119774213	12A2p6	cell line	sgMsh2	119774213	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	113	21	0	0	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon10:c.G1213T:p.G405W,Rpap1:NM_177294:exon11:c.G1213T:p.G405W"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.530012672	2	0.99944	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	83	46	10	0.217391304	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9825446	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M5	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	92	123	2	0.016260163	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.877700985	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	225	118	22	0.186440678	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.930611	AAC	synonymous	NA	NA	NA	NA
M5	chr2	120697786	12A2p6	cell line	sgMsh2	120697786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	195	3	1	0.333333333	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon23:c.A4595G:p.E1532G	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.999999	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	120705724	12A2p6	cell line	sgMsh2	120705724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	91	1	0	0	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon24:c.T12445C:p.F4149L	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	16	2	0.125	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9874115	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	150	23	9	0.391304348	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999829	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	81	42	8	0.19047619	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	121303394	12A2p6	cell line	sgMsh2	121303394	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.403	80	0	0	NA	exonic	Map1a	frameshift insertion	"Map1a:NM_001173506:exon4:c.3977dupG:p.K1329fs*0,Map1a:NM_032393:exon5:c.4691dupG:p.K1567fs*0"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GTG	frameshift	G	5	GGGGG	1
M5	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	116	20	3	0.15	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998552	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	51	17	6	0.352941176	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	1	0.991479	GTT	synonymous	NA	NA	NA	NA
M5	chr2	121510756	12A2p6	cell line	sgMsh2	121510756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	125	20	3	0.15	exonic	Wdr76	nonsynonymous SNV	Wdr76:NM_001369185:exon2:c.T281C:p.V94A	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	122798101	12A2p6	cell line	sgMsh2	122798101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	127	191	34	0.178010471	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon5:c.G523A:p.V175M,Sqor:NM_021507:exon5:c.G523A:p.V175M"	2qE5	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9985337	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr2	125308525	12A2p6	cell line	sgMsh2	125308525	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	56	0	0	NA	exonic	Fbn1	stopgain	Fbn1:NM_007993:exon63:c.T7770G:p.Y2590X	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	107	11	2	0.181818182	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	81	9	1	0.111111111	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9928834	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	126755082	12A2p6	cell line	sgMsh2	126755082	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	116	134	33	0.246268657	exonic	Usp8	synonymous SNV	"Usp8:NM_001252580:exon16:c.A2811C:p.L937L,Usp8:NM_019729:exon16:c.A2778C:p.L926L"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	2	1	1	0.9998552	TAC	synonymous	NA	NA	NA	NA
M5	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	117	15	2	0.133333333	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9746186	ATA	synonymous	NA	NA	NA	NA
M5	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	180	81	0	0	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999974	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	86	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	TTA	synonymous	NA	NA	NA	NA
M5	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	204	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999994	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	164	8	1	0.125	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9984192	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	135	44	12	0.272727273	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999561	GTA	synonymous	NA	NA	NA	NA
M5	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.289	180	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	95	13	1	0.076923077	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	107	24	8	0.333333333	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	98	99	26	0.262626263	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9985847	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	53	85	12	0.141176471	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9924774	ATT	synonymous	NA	NA	NA	NA
M5	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	49	76	26	0.342105263	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9903493	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr2	131520730	12A2p6	cell line	sgMsh2	131520730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	22	5	0.227272727	exonic	Smox	nonsynonymous SNV	"Smox:NM_001177833:exon5:c.C928T:p.P310S,Smox:NM_001177834:exon5:c.C928T:p.P310S,Smox:NM_001177835:exon5:c.C928T:p.P310S,Smox:NM_145533:exon5:c.C928T:p.P310S"	2qF1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	80	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	157	40	4	0.1	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.999989	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr2	132304956	12A2p6	cell line	sgMsh2	132304956	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	186	84	23	0.273809524	exonic	Cds2	nonsynonymous SNV	"Cds2:NM_001291039:exon12:c.G1151T:p.R384M,Cds2:NM_138651:exon12:c.G1202T:p.R401M"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999982	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	132373550	12A2p6	cell line	sgMsh2	132373550	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	172	2	0	0	exonic	Prokr2	synonymous SNV	Prokr2:NM_144944:exon3:c.C990T:p.F330F	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9763366	CGA	synonymous	NA	NA	NA	NA
M5	chr2	132572220	12A2p6	cell line	sgMsh2	132572220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	61	6	0	0	exonic	Gpcpd1	nonsynonymous SNV	"Gpcpd1:NM_001042672:exon2:c.A14G:p.Q5R,Gpcpd1:NM_001355649:exon2:c.A14G:p.Q5R,Gpcpd1:NM_001355650:exon2:c.A14G:p.Q5R,Gpcpd1:NM_001355651:exon2:c.A14G:p.Q5R,Gpcpd1:NM_028802:exon2:c.A14G:p.Q5R"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9907053	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	78	112	27	0.241071429	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.674176119	2	0.817732	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr2	134643895	12A2p6	cell line	sgMsh2	134643895	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	11	3	0.272727273	exonic	Tmx4	synonymous SNV	Tmx4:NM_029148:exon1:c.C111A:p.P37P	2qF2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9688568	TGG	synonymous	NA	NA	NA	NA
M5	chr2	142707297	12A2p6	cell line	sgMsh2	142707297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	57	57	17	0.298245614	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon20:c.T3297C:p.S1099S,Kif16b:NM_001355123:exon21:c.T3330C:p.S1110S"	2qG1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7837762	CAC	synonymous	C	5	CCCCC	NA
M5	chr2	142712909	12A2p6	cell line	sgMsh2	142712909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	113	57	13	0.228070175	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon19:c.A1968G:p.E656E,Kif16b:NM_001355123:exon20:c.A2001G:p.E667E"	2qG1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9983829	TTT	synonymous	NA	NA	NA	NA
M5	chr2	148771377	12A2p6	cell line	sgMsh2	148771377	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	42	0	0	NA	exonic	Cst11	synonymous SNV	Cst11:NM_030059:exon1:c.A27G:p.T9T	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.402809631	2	0.848677	GTG	synonymous	NA	NA	NA	NA
M5	chr2	150930854	12A2p6	cell line	sgMsh2	150930854	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	90	77	19	0.246753247	exonic	Gins1	nonsynonymous SNV	Gins1:NM_027014:exon7:c.G536A:p.R179Q	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.538492875	2	0.9965237	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	150937588	12A2p6	cell line	sgMsh2	150937588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	47	41	5	0.12195122	exonic	Ninl	nonsynonymous SNV	Ninl:NM_207204:exon22:c.A3845G:p.K1282R	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9773954	CTT	nonsynonymous	CTTCCT	12	CTTCCTCTTCCT	NA
M5	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	48	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	32	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	39	109	33	0.302752294	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9820644	AAG	synonymous	NA	NA	NA	NA
M5	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	158	302	70	0.231788079	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999896	CTG	synonymous	NA	NA	NA	NA
M5	chr2	153203878	12A2p6	cell line	sgMsh2	153203878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	68	100	28	0.28	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon16:c.G1669T:p.V557L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	97	5	1	0.2	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8669204	GCT	synonymous	NA	NA	NA	NA
M5	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	56	722	163	0.225761773	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.7717378	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M5	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1912	136	228	0	0	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.810707383	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M5	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	89	117	20	0.170940171	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9707155	ATA	synonymous	NA	NA	NA	NA
M5	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	29	31	6	0.193548387	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9669045	GTT	synonymous	NA	NA	NA	NA
M5	chr2	155716199	12A2p6	cell line	sgMsh2	155716199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	62	125	38	0.304	exonic	Edem2	nonsynonymous SNV	Edem2:NM_145537:exon6:c.G513A:p.M171I	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.995712	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr2	155753594	12A2p6	cell line	sgMsh2	155753594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	75	34	7	0.205882353	exonic	Procr	nonsynonymous SNV	Procr:NM_011171:exon2:c.A317G:p.N106S	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	155921650	12A2p6	cell line	sgMsh2	155921650	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	78	56	9	0.160714286	exonic	Uqcc1	stopgain	"Uqcc1:NM_001355443:exon2:c.G162A:p.W54X,Uqcc1:NM_018888:exon2:c.G102A:p.W34X"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9697408	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	155990259	12A2p6	cell line	sgMsh2	155990259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	74	32	6	0.1875	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon28:c.C4100T:p.A1367V,Cep250:NM_001130000:exon28:c.C4103T:p.A1368V,Cep250:NM_008383:exon29:c.C4040T:p.A1347V,Cep250:NM_177217:exon29:c.C4040T:p.A1347V"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.619054801	2	0.932171	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	66	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	156045671	12A2p6	cell line	sgMsh2	156045671	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	33	1	0	0	exonic	Fer1l4	frameshift deletion	Fer1l4:NM_001136556:exon15:c.1604delG:p.G535Afs*9	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5	chr2	156077617	12A2p6	cell line	sgMsh2	156077617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	138	172	27	0.156976744	exonic	Cpne1	nonsynonymous SNV	"Cpne1:NM_170590:exon11:c.G931A:p.G311R,Cpne1:NM_170588:exon12:c.G931A:p.G311R"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.23	100	127	33	0.25984252	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9991413	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	19	3	1	0.333333333	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.8631926	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	334	90	1	0.011111111	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9979827	TAT	synonymous	NA	NA	NA	NA
M5	chr2	157120489	12A2p6	cell line	sgMsh2	157120489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	120	76	0	0	exonic	Samhd1	frameshift deletion	"Samhd1:NM_001139520:exon6:c.692delA:p.K231Sfs*24,Samhd1:NM_001370610:exon6:c.692delA:p.K231Sfs*24,Samhd1:NM_018851:exon6:c.692delA:p.K231Sfs*24"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.937062404	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr2	157469871	12A2p6	cell line	sgMsh2	157469871	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	46	93	22	0.23655914	exonic	Src	nonsynonymous SNV	"Src:NM_001025395:exon14:c.G1518T:p.E506D,Src:NM_009271:exon15:c.G1536T:p.E512D"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9240572	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	157561705	12A2p6	cell line	sgMsh2	157561705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	29	0	0	NA	exonic	Nnat	synonymous SNV	"Nnat:NM_001291128:exon3:c.A324G:p.P108P,Nnat:NM_001291129:exon3:c.A312G:p.P104P"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9669045	CAG	synonymous	NA	NA	NA	NA
M5	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	149	51	14	0.274509804	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M5	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	44	154	38	0.246753247	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	GCG	synonymous	NA	NA	NA	NA
M5	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	127	85	26	0.305882353	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9997278	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	34	13	4	0.307692308	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9746854	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	200	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9998566	AGC	synonymous	NA	NA	NA	NA
M5	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	202	40	6	0.15	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M5	chr2	164562769	12A2p6	cell line	sgMsh2	164562769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	36	1617	321	0.19851577	exonic	Wfdc2	nonsynonymous SNV	"Wfdc2:NM_001374655:exon1:c.T44C:p.L15P,Wfdc2:NM_026323:exon1:c.T44C:p.L15P"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9195688	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	164597180	12A2p6	cell line	sgMsh2	164597180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	27	0	0	NA	exonic	Wfdc8	synonymous SNV	Wfdc8:NM_001276432:exon7:c.A1281G:p.X427X	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9626395	GTT	synonymous	NA	NA	NA	NA
M5	chr2	165434190	12A2p6	cell line	sgMsh2	165434190	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	exonic	Slc13a3	nonsynonymous SNV	Slc13a3:NM_054055:exon5:c.C635T:p.P212L	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	66	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9927852	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	166927269	12A2p6	cell line	sgMsh2	166927269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	189	332	70	0.210843373	exonic	Cse1l	nonsynonymous SNV	Cse1l:NM_023565:exon8:c.A701G:p.N234S	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999985	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr2	167056773	12A2p6	cell line	sgMsh2	167056773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	155	20	4	0.2	exonic	Znfx1	nonsynonymous SNV	Znfx1:NM_001033196:exon3:c.A230G:p.N77S	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9998837	GTT	nonsynonymous	TTC	9	TTCTTCTTC	NA
M5	chr2	167617965	12A2p6	cell line	sgMsh2	167617965	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	62	13	0.209677419	exonic	Ube2v1	nonsynonymous SNV	"Ube2v1:NM_001311146:exon2:c.C35T:p.P12L,Ube2v1:NM_023230:exon2:c.C35T:p.P12L,Ube2v1:NM_001311131:exon3:c.C113T:p.P38L"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999858	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr2	167974773	12A2p6	cell line	sgMsh2	167974773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	95	74	15	0.202702703	exonic	Ptpn1	synonymous SNV	Ptpn1:NM_011201:exon7:c.A747G:p.V249V	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9772096	TAC	synonymous	NA	NA	NA	NA
M5	chr2	167980825	12A2p6	cell line	sgMsh2	167980825	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	122	0	0	NA	exonic	Ripor3	stoploss	Ripor3:NM_001080708:exon22:c.2815delT:p.*939delinsKMP*	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.928582201	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M5	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	209	268	66	0.246268657	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	24	6	1	0.166666667	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9213194	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	63	49	11	0.224489796	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr2	168926553	12A2p6	cell line	sgMsh2	168926553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	90	49	19	0.387755102	exonic	Zfp64	stopgain	Zfp64:NM_009564:exon6:c.C1138T:p.Q380X	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	141	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.0991506	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	134	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	98	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	90	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr2	174345484	12A2p6	cell line	sgMsh2	174345484	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	119	2814	759	0.269722814	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon8:c.A2936C:p.N979T,Gnas:NM_001077510:exon8:c.A719C:p.N240T,Gnas:NM_001364030:exon8:c.A716C:p.N239T,Gnas:NM_010309:exon9:c.A2978C:p.N993T,Gnas:NM_201616:exon9:c.A761C:p.N254T,Gnas:NM_001310083:exon10:c.A761C:p.N254T"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9996466	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	39	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9820644	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	78	39	17	0.435897436	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	CTA	synonymous	NA	NA	NA	NA
M5	chr2	178347653	12A2p6	cell line	sgMsh2	178347653	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon42:c.T4291G:p.F1431V	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	69	18	0.260869565	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	96	117	39	0.333333333	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.746257842	2	0.5100466	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	55	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	7.67E-07	GCT	synonymous	NA	NA	NA	NA
M5	chr2	180911023	12A2p6	cell line	sgMsh2	180911023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	95	132	28	0.212121212	exonic	Ythdf1	synonymous SNV	Ythdf1:NM_173761:exon4:c.T1317C:p.S439S	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	CAC	synonymous	NA	NA	NA	NA
M5	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	23	4	0.173913043	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9261609	ATG	synonymous	NA	NA	NA	NA
M5	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	107	87	31	0.356321839	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	ATC	nonsynonymous	A	5	AAAAA	NA
M5	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	173	12	4	0.333333333	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9999514	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	92	12	4	0.333333333	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M5	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	146	20	3	0.15	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	7539087	12A2p6	cell line	sgMsh2	7539087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	149	35	9	0.257142857	exonic	Zc2hc1a	nonsynonymous SNV	Zc2hc1a:NM_173181:exon8:c.A713G:p.K238R	3qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	145	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999724	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	162	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999919	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	128	33	3	0.090909091	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	0.8054246	AAG	synonymous	NA	NA	NA	NA
M5	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	73	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	20015776	12A2p6	cell line	sgMsh2	20015776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	94	0	0	NA	exonic	Hps3	nonsynonymous SNV	Hps3:NM_001146324:exon9:c.A1735G:p.R579G	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994234	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	100	14	2	0.142857143	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	8.82E-09	ACA	synonymous	NA	NA	NA	NA
M5	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	95	60	19	0.316666667	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	AAT	nonsynonymous	A	5	AAAAA	NA
M5	chr3	20239672	12A2p6	cell line	sgMsh2	20239672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	172	0	0	NA	exonic	Cpa3	nonsynonymous SNV	Cpa3:NM_007753:exon3:c.T151C:p.F51L	3qA2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999957	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	213	10	4	0.4	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr3	28895683	12A2p6	cell line	sgMsh2	28895683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.447	55	0	0	NA	exonic	Gm1527	frameshift deletion	Gm1527:NM_001033479:exon2:c.91delA:p.R34Dfs*15	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M5	chr3	30598185	12A2p6	cell line	sgMsh2	30598185	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	100	0	0	NA	exonic	Actrt3	nonsynonymous SNV	Actrt3:NM_029690:exon2:c.G759T:p.E253D	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996044	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	30936831	12A2p6	cell line	sgMsh2	30936831	-	G	Insertion	Strelka2;Vardict	2	0.2212	104	23	0	0	exonic	Phc3	frameshift insertion	"Phc3:NM_001165955:exon7:c.1100dupC:p.H368Sfs*38,Phc3:NM_001165954:exon8:c.1235dupC:p.H413Sfs*38,Phc3:NM_001165956:exon8:c.1235dupC:p.H413Sfs*84,Phc3:NM_153421:exon8:c.1199dupC:p.H401Sfs*38"	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.937910424	NA	NA	GAG	frameshift	G	8	GGGGGGGG	1
M5	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	133	98	26	0.265306122	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9995975	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	53	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9924774	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	36164762	12A2p6	cell line	sgMsh2	36164762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	153	25	8	0.32	exonic	Zfp267	synonymous SNV	Zfp267:NM_001101478:exon4:c.C933T:p.D311D	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999858	ACG	synonymous	NA	NA	NA	NA
M5	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	129	144	26	0.180555556	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9980914	TTG	synonymous	NA	NA	NA	NA
M5	chr3	36988258	12A2p6	cell line	sgMsh2	36988258	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	129	18	7	0.388888889	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon48:c.A8389T:p.M2797L	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	0.8936439	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	198	41	7	0.170731707	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	38891206	12A2p6	cell line	sgMsh2	38891206	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.216	129	0	0	NA	exonic	Fat4	frameshift insertion	Fat4:NM_183221:exon1:c.4248dupC:p.S1419Qfs*8	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.915861897	NA	NA	AAC	frameshift	C	5	CCCCC	1
M5	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	127	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999274	TGC	synonymous	NA	NA	NA	NA
M5	chr3	41613752	12A2p6	cell line	sgMsh2	41613752	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	52	43	10	0.23255814	exonic	Jade1	stopgain	"Jade1:NM_001130184:exon11:c.C2254T:p.Q752X,Jade1:NM_001130185:exon11:c.C2254T:p.Q752X,Jade1:NM_001130186:exon11:c.C2254T:p.Q752X,Jade1:NM_172303:exon11:c.C2254T:p.Q752X"	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	GCA	nonsynonymous	GCA	9	GCAGCAGCA	NA
M5	chr3	41742008	12A2p6	cell line	sgMsh2	41742008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	253	14	6	0.428571429	exonic	Sclt1	synonymous SNV	Sclt1:NM_001081411:exon1:c.A21G:p.L7L	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	2.75E-08	GTA	synonymous	NA	NA	NA	NA
M5	chr3	45392577	12A2p6	cell line	sgMsh2	45392577	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	161	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.C2806A:p.L936I,Pcdh10:NM_001098171:exon4:c.C2806A:p.L936I,Pcdh10:NM_001098172:exon4:c.C2806A:p.L936I"	3qB	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999914	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	49755048	12A2p6	cell line	sgMsh2	49755048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	249	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.T1817A:p.V606D	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.7999016	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	69	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9816367	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	145	64	17	0.265625	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999595	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	136	133	32	0.240601504	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999588	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	54734326	12A2p6	cell line	sgMsh2	54734326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	210	127	39	0.307086614	exonic	Exosc8	synonymous SNV	"Exosc8:NM_001163570:exon2:c.G24A:p.V8V,Exosc8:NM_027148:exon2:c.G24A:p.V8V"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	CCA	synonymous	NA	NA	NA	NA
M5	chr3	54782403	12A2p6	cell line	sgMsh2	54782403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	18	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon2:c.A43G:p.S15G	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9360476	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	139	77	17	0.220779221	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.8114735	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	94	19	0.20212766	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9650174	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr3	55209024	12A2p6	cell line	sgMsh2	55209024	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	106	0	0	NA	exonic	Sohlh2	nonsynonymous SNV	Sohlh2:NM_028937:exon11:c.T1392A:p.S464R	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9911375	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	49	8	5	0.625	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9364649	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M5	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	193	22	0	0	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9933659	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	143	18	3	0.166666667	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999734	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	81	237	4	0.016877637	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.686896423	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr3	59179396	12A2p6	cell line	sgMsh2	59179396	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	148	0	0	NA	exonic	Gpr87	synonymous SNV	Gpr87:NM_001302203:exon3:c.C687A:p.I229I	3qD	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.67841622	2	0.9828006	AGA	synonymous	NA	NA	NA	NA
M5	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	151	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	59328421	12A2p6	cell line	sgMsh2	59328421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	99	0	0	NA	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.T4338C:p.S1446S	3qD	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	CAC	synonymous	NA	NA	NA	NA
M5	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.132	31	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.559693382	2	0.6802986	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	236	49	16	0.326530612	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M5	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	66	41	8	0.195121951	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	86	384	0	0	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M5	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	175	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.9140656	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	75616724	12A2p6	cell line	sgMsh2	75616724	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	99	0	0	NA	exonic	Serpini1	nonsynonymous SNV	"Serpini1:NM_001357514:exon4:c.A635T:p.Q212L,Serpini1:NM_009250:exon4:c.A638T:p.Q213L"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	76588983	12A2p6	cell line	sgMsh2	76588983	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	89	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon9:c.C1052T:p.A351V,Fstl5:NM_178673:exon9:c.C1052T:p.A351V"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9971655	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr3	76707951	12A2p6	cell line	sgMsh2	76707951	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	88	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon16:c.C2318T:p.S773F,Fstl5:NM_178673:exon16:c.C2318T:p.S773F"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	76	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9739122	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	169	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999948	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	78	3	0	0	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.903141593	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	165	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999933	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr3	83030849	12A2p6	cell line	sgMsh2	83030849	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	63	0	0	NA	exonic	Fga	nonsynonymous SNV	"Fga:NM_001111048:exon5:c.A530T:p.K177M,Fga:NM_010196:exon5:c.A530T:p.K177M"	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	83837498	12A2p6	cell line	sgMsh2	83837498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	201	4	1	0.25	exonic	Tlr2	nonsynonymous SNV	Tlr2:NM_011905:exon3:c.A1277G:p.H426R	3qE3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	122	25	7	0.28	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999006	AAT	synonymous	NA	NA	NA	NA
M5	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	183	31	6	0.193548387	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.999836	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M5	chr3	86085274	12A2p6	cell line	sgMsh2	86085274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	68	190	39	0.205263158	exonic	Sh3d19	nonsynonymous SNV	"Sh3d19:NM_001082414:exon8:c.T1259C:p.I420T,Sh3d19:NM_001374679:exon9:c.T1259C:p.I420T"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	187	37	9	0.243243243	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.97493	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr3	87925088	12A2p6	cell line	sgMsh2	87925088	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	80	16	3	0.1875	exonic	Rrnad1	nonsynonymous SNV	Rrnad1:NM_153562:exon6:c.A980C:p.E327A	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9979138	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr3	88083991	12A2p6	cell line	sgMsh2	88083991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	27	9	0.333333333	exonic	Iqgap3	nonsynonymous SNV	Iqgap3:NM_001033484:exon2:c.A98G:p.Y33C	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	18	5	0.277777778	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	88895604	12A2p6	cell line	sgMsh2	88895604	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	503	48	14	0.291666667	exonic	Gon4l	nonsynonymous SNV	"Gon4l:NM_027389:exon21:c.C3521A:p.T1174N,Gon4l:NM_001242372:exon22:c.C3572A:p.T1191N"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr3	89094889	12A2p6	cell line	sgMsh2	89094889	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	209	1079	222	0.205746061	exonic	Fdps	nonsynonymous SNV	"Fdps:NM_134469:exon7:c.T619A:p.Y207N,Fdps:NM_001253751:exon8:c.T820A:p.Y274N"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999991	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	43	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9859936	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M5	chr3	89231054	12A2p6	cell line	sgMsh2	89231054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	222	521	130	0.249520154	exonic	Muc1	nonsynonymous SNV	Muc1:NM_013605:exon2:c.T1202C:p.V401A	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	89237746	12A2p6	cell line	sgMsh2	89237746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	44	33	8	0.242424242	exonic	Trim46	synonymous SNV	"Trim46:NM_001039466:exon8:c.A1420C:p.R474R,Trim46:NM_183037:exon8:c.A1459C:p.R487R"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9868351	CTC	synonymous	NA	NA	NA	NA
M5	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	65	85	11	0.129411765	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.614814699	2	0.09977528	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr3	89447351	12A2p6	cell line	sgMsh2	89447351	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	42	30	7	0.233333333	exonic	Pbxip1	nonsynonymous SNV	Pbxip1:NM_146131:exon10:c.G1176T:p.K392N	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9850991	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	91	39	11	0.282051282	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9953029	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	53	681	204	0.299559471	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9924774	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	178	66	16	0.242424242	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9999942	AGC	synonymous	NA	NA	NA	NA
M5	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	139	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9951943	TCA	nonsynonymous	NA	NA	NA	NA
M5	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	226	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.09105294	TAC	synonymous	NA	NA	NA	NA
M5	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	222	116	28	0.24137931	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.729297437	2	0.9647596	GTG	synonymous	NA	NA	NA	NA
M5	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	68	49	14	0.285714286	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9458782	CTT	nonsynonymous	T	5	TTTTT	NA
M5	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	69	93	20	0.215053763	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9902415	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	156	246	67	0.272357724	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999883	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	237	272	49	0.180147059	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	232	288	58	0.201388889	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9997171	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	95764124	12A2p6	cell line	sgMsh2	95764124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	72	32	7	0.21875	exonic	Rprd2	synonymous SNV	"Rprd2:NM_001368179:exon10:c.A3834G:p.V1278V,Rprd2:NM_001081293:exon11:c.A3966G:p.V1322V,Rprd2:NM_001368178:exon11:c.A3912G:p.V1304V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	GTA	synonymous	NA	NA	NA	NA
M5	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	104	1	0	0	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	114	43	9	0.209302326	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	26	0	0	NA	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	113	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8729106	AAG	synonymous	NA	NA	NA	NA
M5	chr3	97603689	12A2p6	cell line	sgMsh2	97603689	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	20	5	0.25	exonic	Chd1l	synonymous SNV	Chd1l:NM_026539:exon3:c.T300G:p.V100V	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999937	AAA	synonymous	NA	NA	NA	NA
M5	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	110	13	3	0.230769231	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997889	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	152	11	5	0.454545455	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9999509	AGT	synonymous	NA	NA	NA	NA
M5	chr3	98297028	12A2p6	cell line	sgMsh2	98297028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	119	9	5	0.555555556	exonic	Hmgcs2	synonymous SNV	Hmgcs2:NM_008256:exon4:c.A744G:p.S248S	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.99988	CAG	synonymous	NA	NA	NA	NA
M5	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	107	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	CTT	synonymous	NA	NA	NA	NA
M5	chr3	100095607	12A2p6	cell line	sgMsh2	100095607	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	137	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon39:c.C5646A:p.S1882R	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.686896423	2	0.9632376	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	100888311	12A2p6	cell line	sgMsh2	100888311	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	110	4	1	0.25	exonic	Vtcn1	nonsynonymous SNV	Vtcn1:NM_178594:exon4:c.G593T:p.S198I	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9984095	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	67	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9968642	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	91	12	3	0.25	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.792898957	1	0.7975607	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr3	103326175	12A2p6	cell line	sgMsh2	103326175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	49	130	23	0.176923077	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon7:c.T1285C:p.F429L,Trim33:NM_053170:exon7:c.T1285C:p.F429L"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9903493	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	298	152	45	0.296052632	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	2.57E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	103777760	12A2p6	cell line	sgMsh2	103777760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	95	20	0.210526316	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon2:c.C538A:p.H180N,Hipk1:NM_001301306:exon2:c.C538A:p.H180N,Hipk1:NM_010432:exon2:c.C538A:p.H180N"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	34	8	1	0.125	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9756076	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	80	1	0	0	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	GGA	synonymous	NA	NA	NA	NA
M5	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	104	53	12	0.226415094	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9972664	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	221	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9977549	CTG	nonsynonymous	C	5	CCCCC	NA
M5	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	90	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	130	17	7	0.411764706	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8790211	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr3	106762161	12A2p6	cell line	sgMsh2	106762161	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	106	7	0	0	exonic	Cd53	nonsynonymous SNV	Cd53:NM_007651:exon7:c.G520A:p.A174T	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997286	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr3	107195326	12A2p6	cell line	sgMsh2	107195326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1272T:p.Y424Y	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	ACG	synonymous	NA	NA	NA	NA
M5	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	128	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9953845	GCT	synonymous	NA	NA	NA	NA
M5	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.1667	120	2	0	0	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.706824899	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M5	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	36	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.720817234	1	6.92E-05	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	108267820	12A2p6	cell line	sgMsh2	108267820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	260	113	14	0.123893805	exonic	Psma5	nonsynonymous SNV	Psma5:NM_011967:exon5:c.A319G:p.M107V	3qF2.3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	1.81E-08	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	188	22	10	0.454545455	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9927491	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	34	5	2	0.4	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9756076	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	108412474	12A2p6	cell line	sgMsh2	108412474	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	112	5	1	0.2	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.T3021A:p.A1007A,Celsr2:NM_017392:exon1:c.T3021A:p.A1007A"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998138	TAG	synonymous	NA	NA	NA	NA
M5	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	85	7	3	0.428571429	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9323815	CTG	synonymous	NA	NA	NA	NA
M5	chr3	108414903	12A2p6	cell line	sgMsh2	108414903	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	153	6	1	0.166666667	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon1:c.A592G:p.T198A,Celsr2:NM_017392:exon1:c.A592G:p.T198A"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.720817234	2	0.09935962	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	96	9	2	0.222222222	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994914	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	64	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	113249333	12A2p6	cell line	sgMsh2	113249333	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	25	0	0	NA	exonic	Amy2a5	stopgain	Amy2a5:NM_001042711:exon10:c.A1405T:p.K469X	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9578486	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	114206392	12A2p6	cell line	sgMsh2	114206392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	121	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon60:c.A4483G:p.I1495V	3qF3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	86	299	74	0.247491639	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	CCT	synonymous	NA	NA	NA	NA
M5	chr3	116497647	12A2p6	cell line	sgMsh2	116497647	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	95	63	19	0.301587302	exonic	Rtca	nonsynonymous SNV	Rtca:NM_025517:exon7:c.G683T:p.S228I	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9891722	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	48	50	14	0.28	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9897301	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	128	1	1	1	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.610574598	2	0.9975435	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr3	116581500	12A2p6	cell line	sgMsh2	116581500	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	114	31	12	0.387096774	exonic	Trmt13	nonsynonymous SNV	Trmt13:NM_030016:exon12:c.A1358G:p.Y453C	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.627535004	2	0.9897956	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	172	28	4	0.142857143	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9999743	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	120	54	14	0.259259259	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998873	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	147	1	0	0	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999793	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr3	123479673	12A2p6	cell line	sgMsh2	123479673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	169	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon4:c.A917G:p.N306S	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999948	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	116	1	1	1	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8360332	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	125713338	12A2p6	cell line	sgMsh2	125713338	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	91	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon11:c.G2150T:p.R717M	3qG1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9967257	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	148	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.919498	CGA	synonymous	NA	NA	NA	NA
M5	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	139	9	1	0.111111111	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	CAC	synonymous	NA	NA	NA	NA
M5	chr3	129633453	12A2p6	cell line	sgMsh2	129633453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	71	137	27	0.197080292	exonic	Elovl6	nonsynonymous SNV	Elovl6:NM_130450:exon5:c.A767G:p.Y256C	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.8880147	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	171	62	12	0.193548387	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999784	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	90	1	0	0	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	202	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	116	134	28	0.208955224	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7336607	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	148	270	73	0.27037037	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999806	ATG	synonymous	NA	NA	NA	NA
M5	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	124	22	9	0.409090909	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999124	TAC	synonymous	NA	NA	NA	NA
M5	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	151	94	0	0	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	135	88	19	0.215909091	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.9379827	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	229	516	99	0.191860465	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.6881222	AAA	nonsynonymous	A	5	AAAAA	NA
M5	chr3	142623776	12A2p6	cell line	sgMsh2	142623776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	99	1	0	0	exonic	Gbp2	nonsynonymous SNV	Gbp2:NM_010260:exon2:c.T83C:p.L28P	3qH1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	0.6784911	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	137	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.636015206	2	0.995711	CTC	synonymous	NA	NA	NA	NA
M5	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	239	75	20	0.266666667	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9999973	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	280	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	5.86E-09	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	104	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9905974	GTT	synonymous	NA	NA	NA	NA
M5	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	73	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.996562	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	152374766	12A2p6	cell line	sgMsh2	152374766	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	139	83	9	0.108433735	exonic	Usp33	synonymous SNV	"Usp33:NM_001076676:exon13:c.T1533G:p.A511A,Usp33:NM_001252486:exon13:c.T1533G:p.A511A,Usp33:NM_001355666:exon13:c.T1533G:p.A511A,Usp33:NM_133247:exon13:c.T1533G:p.A511A"	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9990828	CTT	synonymous	NA	NA	NA	NA
M5	chr3	152428148	12A2p6	cell line	sgMsh2	152428148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	110	30	0.272727273	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001355673:exon3:c.A842G:p.Q281R,Zzz3:NM_001080755:exon4:c.A842G:p.Q281R,Zzz3:NM_001287139:exon4:c.A842G:p.Q281R"	3qH3	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9943723	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	58	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	2	1	1	0.9944939	CCA	synonymous	C	5	CCCCC	NA
M5	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	356	113	22	0.194690265	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	1.21E-08	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	148	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999806	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	69	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.754738045	1	0.6436015	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	175	36	10	0.277777778	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8412612	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	128	36	6	0.166666667	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999318	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	104	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996923	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	163	203	50	0.246305419	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.99264	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr3	158175119	12A2p6	cell line	sgMsh2	158175119	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon17:c.C1778T:p.S593F,Lrrc7:NM_001370782:exon17:c.C1778T:p.S593F,Lrrc7:NM_001081358:exon18:c.C1679T:p.S560F,Lrrc7:NM_001291452:exon18:c.C1679T:p.S560F,Lrrc7:NM_001291453:exon18:c.C1679T:p.S560F"	3qH4	chr3-10012637-159913826	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9514907	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr4	3184754	12A2p6	cell line	sgMsh2	3184754	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.59	29	0	0	NA	exonic	Vmn1r3	nonsynonymous SNV	Vmn1r3:NM_001167535:exon1:c.A552G:p.I184M	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9669045	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr4	4134286	12A2p6	cell line	sgMsh2	4134286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	120	0	0	NA	exonic	Penk	nonsynonymous SNV	"Penk:NM_001002927:exon2:c.G360T:p.M120I,Penk:NM_001348209:exon3:c.G360T:p.M120I"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998873	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	71	108	28	0.259259259	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9975592	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	11245804	12A2p6	cell line	sgMsh2	11245804	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	84	138	39	0.282608696	exonic	Ints8	nonsynonymous SNV	"Ints8:NM_001159595:exon6:c.G673A:p.V225M,Ints8:NM_178112:exon6:c.G673A:p.V225M"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9989199	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	154	113	40	0.353982301	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999867	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	15919841	12A2p6	cell line	sgMsh2	15919841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	76	160	56	0.35	exonic	Decr1	synonymous SNV	Decr1:NM_026172:exon8:c.T876C:p.I292I	4qA2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9982159	TAA	synonymous	NA	NA	NA	NA
M5	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	104	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9996923	AAG	synonymous	NA	NA	NA	NA
M5	chr4	18116212	12A2p6	cell line	sgMsh2	18116212	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	107	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon10:c.G1815T:p.E605D,Mmp16:NM_001379518:exon11:c.G1815T:p.E605D,Mmp16:NM_001379519:exon11:c.G1815T:p.E605D"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9997451	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.627	74	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9979776	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	19481922	12A2p6	cell line	sgMsh2	19481922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	94	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon15:c.A1730G:p.K577R	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9994234	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	45	24	6	0.25	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9876267	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	81	122	32	0.262295082	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9986962	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	122	24	8	0.333333333	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999006	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	24505411	12A2p6	cell line	sgMsh2	24505411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	131	34	6	0.176470588	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon6:c.C670A:p.L224M	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999435	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr4	25620102	12A2p6	cell line	sgMsh2	25620102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	91	0	0	NA	exonic	Fut9	synonymous SNV	Fut9:NM_010243:exon3:c.T711C:p.T237T	4qA3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9993039	AAG	synonymous	NA	NA	NA	NA
M5	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	122	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999006	TTA	synonymous	NA	NA	NA	NA
M5	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	102	52	14	0.269230769	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9996511	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	110	27	6	0.222222222	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9997889	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	117	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999864	TAC	synonymous	NA	NA	NA	NA
M5	chr4	41118884	12A2p6	cell line	sgMsh2	41118884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	32	29	10	0.344827586	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon16:c.A2108G:p.E703G	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9724323	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	41121873	12A2p6	cell line	sgMsh2	41121873	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	34	23	6	0.260869565	exonic	Nol6	synonymous SNV	Nol6:NM_139236:exon5:c.T660G:p.A220A	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9756076	AAG	synonymous	NA	NA	NA	NA
M5	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.354	88	75	7	0.093333333	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr4	41638833	12A2p6	cell line	sgMsh2	41638833	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	34	0	0	NA	exonic	Enho	nonsynonymous SNV	Enho:NM_027147:exon2:c.G10A:p.A4T	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9756076	GCT	nonsynonymous	C	5	CCCCC	NA
M5	chr4	41765455	12A2p6	cell line	sgMsh2	41765455	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	136	6	4	0.666666667	exonic	Il11ra1	synonymous SNV	"Il11ra1:NM_001163401:exon7:c.T549C:p.H183H,Il11ra1:NM_010549:exon7:c.T549C:p.H183H,Il11ra1:NM_001172054:exon8:c.T549C:p.H183H"	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999588	ATG	synonymous	NA	NA	NA	NA
M5	chr4	43654928	12A2p6	cell line	sgMsh2	43654928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	49	43	18	0.418604651	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon2:c.A200G:p.D67G	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9903493	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	113	6	3	0.5	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998251	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr4	45285604	12A2p6	cell line	sgMsh2	45285604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	32	1	0	0	exonic	Frmpd1	nonsynonymous SNV	Frmpd1:NM_001081172:exon16:c.G4424A:p.C1475Y	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9724323	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	216	33	4	0.121212121	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr4	48204258	12A2p6	cell line	sgMsh2	48204258	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	78	191	80	0.418848168	exonic	Erp44	nonsynonymous SNV	"Erp44:NM_001355184:exon9:c.G626T:p.C209F,Erp44:NM_029572:exon10:c.G902T:p.C301F"	4qB1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9984262	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	62	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.995712	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	89	5	1	0.2	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9992108	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	55	13	2	0.153846154	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9933597	CTC	synonymous	NA	NA	NA	NA
M5	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	157	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999989	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	60	2	1	0.5	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9951408	GTG	synonymous	NA	NA	NA	NA
M5	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	129	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999936	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	59113907	12A2p6	cell line	sgMsh2	59113907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	76	0	0	NA	exonic	Shoc1	synonymous SNV	Shoc1:NM_001370843:exon2:c.T57C:p.Y19Y	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9982159	AAT	synonymous	NA	NA	NA	NA
M5	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	39	19	9	0.473684211	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.962503012	1	0.9719467	CCT	synonymous	NA	NA	NA	NA
M5	chr4	63151497	12A2p6	cell line	sgMsh2	63151497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	81	0	0	NA	exonic	Ambp	stopgain	Ambp:NM_007443:exon3:c.C291A:p.Y97X	4qB3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9986962	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	32	17	4	0.235294118	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9724323	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr4	65992427	12A2p6	cell line	sgMsh2	65992427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	79	0	0	NA	exonic	Astn2	synonymous SNV	"Astn2:NM_019514:exon5:c.G1167T:p.L389L,Astn2:NM_207109:exon6:c.G1323T:p.L441L"	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9985219	TCA	synonymous	NA	NA	NA	NA
M5	chr4	68792962	12A2p6	cell line	sgMsh2	68792962	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	46	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon7:c.G1008T:p.W336C	4qC1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9883713	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	70448741	12A2p6	cell line	sgMsh2	70448741	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	125	4	2	0.5	exonic	Megf9	frameshift deletion	Megf9:NM_172694:exon4:c.1003delT:p.Y335Ifs*17	4qC2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr4	74187548	12A2p6	cell line	sgMsh2	74187548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	108	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon14:c.A1430G:p.D477G,Frmd3:NM_172869:exon14:c.A1430G:p.D477G"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9997606	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	74359422	12A2p6	cell line	sgMsh2	74359422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	59	7	0	0	exonic	Kdm4c	stopgain	"Kdm4c:NM_001356561:exon16:c.G2087A:p.W696X,Kdm4c:NM_001172095:exon17:c.G2363A:p.W788X,Kdm4c:NM_144787:exon17:c.G2312A:p.W771X"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.877700985	1	0.9526171	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr4	75278201	12A2p6	cell line	sgMsh2	75278201	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.417	26	16	0	0	exonic	Dmac1	frameshift insertion	Dmac1:NM_025849:exon1:c.50dupC:p.T18Nfs*24	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	TTG	frameshift	G	5	GGGGG	1
M5	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	123	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999067	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	144	4	3	0.75	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999975	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	45	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9876267	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	59	76	14	0.184210526	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9948274	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	25	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9578486	GTC	synonymous	NA	NA	NA	NA
M5	chr4	96479061	12A2p6	cell line	sgMsh2	96479061	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	121	0	0	NA	exonic	Cyp2j8	synonymous SNV	"Cyp2j8:NM_001370972:exon4:c.T387G:p.P129P,Cyp2j8:NM_001104927:exon5:c.T819G:p.P273P"	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998942	AAG	synonymous	NA	NA	NA	NA
M5	chr4	96479086	12A2p6	cell line	sgMsh2	96479086	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	111	0	0	NA	exonic	Cyp2j8	nonsynonymous SNV	"Cyp2j8:NM_001370972:exon4:c.A362T:p.D121V,Cyp2j8:NM_001104927:exon5:c.A794T:p.D265V"	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998017	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	96629582	12A2p6	cell line	sgMsh2	96629582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	82	0	0	NA	exonic	Cyp2j5	synonymous SNV	Cyp2j5:NM_010007:exon9:c.T1392C:p.L464L	4qC5	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9987755	TAA	synonymous	NA	NA	NA	NA
M5	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	82	55	15	0.272727273	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9987755	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	146	155	40	0.258064516	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999978	CGA	synonymous	NA	NA	NA	NA
M5	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	84	37	8	0.216216216	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.979463418	1	0.9981481	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M5	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	124	72	24	0.333333333	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999124	CTG	synonymous	NA	NA	NA	NA
M5	chr4	104605307	12A2p6	cell line	sgMsh2	104605307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	47	0	0	NA	exonic	Dab1	nonsynonymous SNV	"Dab1:NM_010014:exon3:c.G77A:p.R26H,Dab1:NM_177259:exon3:c.G77A:p.R26H,Dab1:NM_001369046:exon5:c.G77A:p.R26H,Dab1:NM_001369048:exon5:c.G77A:p.R26H,Dab1:NM_001369047:exon6:c.G77A:p.R26H,Dab1:NM_001369049:exon6:c.G77A:p.R26H"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9890716	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr4	104861386	12A2p6	cell line	sgMsh2	104861386	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	78	0	0	NA	exonic	C8a	nonsynonymous SNV	"C8a:NM_001290645:exon3:c.G239A:p.G80D,C8a:NM_001316667:exon4:c.G371A:p.G124D,C8a:NM_146148:exon4:c.G371A:p.G124D"	4qC6	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9984262	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	106447658	12A2p6	cell line	sgMsh2	106447658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	32	20	1	0.05	exonic	Pcsk9	synonymous SNV	Pcsk9:NM_153565:exon8:c.C1212T:p.S404S	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9724323	GGC	synonymous	NA	NA	NA	NA
M5	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	92	43	12	0.279069767	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9993462	TAG	synonymous	GTA	8	GTAGTAGT	NA
M5	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	135	22	7	0.318181818	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999561	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	166	101	32	0.316831683	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999937	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr4	109244729	12A2p6	cell line	sgMsh2	109244729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	91	0	0	NA	exonic	Calr4	nonsynonymous SNV	"Calr4:NM_001033226:exon5:c.A701G:p.K234R,Calr4:NM_001285895:exon6:c.A758G:p.K253R,Calr4:NM_001285896:exon6:c.A380G:p.K127R,Calr4:NM_001285897:exon6:c.A380G:p.K127R,Calr4:NM_001285898:exon6:c.A380G:p.K127R"	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9993039	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	112	81	27	0.333333333	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998138	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr4	111890607	12A2p6	cell line	sgMsh2	111890607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	64	0	0	NA	exonic	Slc5a9	nonsynonymous SNV	Slc5a9:NM_145551:exon8:c.C775T:p.R259W	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9962163	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	144	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999975	GCT	synonymous	NA	NA	NA	NA
M5	chr4	114409242	12A2p6	cell line	sgMsh2	114409242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	48	0	0	NA	exonic	Trabd2b	nonsynonymous SNV	Trabd2b:NM_001085549:exon2:c.T452C:p.F151S	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9897301	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	83	27	4	0.148148148	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9988499	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	18	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2051	39	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.869644792	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
M5	chr4	115525899	12A2p6	cell line	sgMsh2	115525899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	237	0	0	NA	exonic	Cyp4a10	synonymous SNV	Cyp4a10:NM_010011:exon9:c.T1200C:p.D400D	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M5	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	168	20	10	0.5	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999945	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	59	218	54	0.247706422	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9948274	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M5	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998942	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	38	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9809238	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	57	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.994139	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	188	48	13	0.270833333	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999984	ATT	synonymous	NA	NA	NA	NA
M5	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	162	129	48	0.372093023	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999919	CAG	synonymous	GT	8	GTGTGTGT	NA
M5	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	85	1	0	0	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9989856	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	99	166	53	0.319277108	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9995787	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	88	12	4	0.333333333	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9991597	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	108	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9997606	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	63	1	1	1	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.995972	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	117	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.999864	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr4	126043463	12A2p6	cell line	sgMsh2	126043463	C	T	SNV	Mutect2;Vardict	2	0.069	60	0	0	NA	exonic	Csf3r	synonymous SNV	"Csf3r:NM_001252651:exon15:c.C1815T:p.S605S,Csf3r:NM_007782:exon17:c.C2139T:p.S713S"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.292566995	3	0.09413329	CCG	synonymous	NA	NA	NA	NA
M5	chr4	126043469	12A2p6	cell line	sgMsh2	126043469	C	T	SNV	Mutect2;Vardict	2	0.068	57	0	0	NA	exonic	Csf3r	synonymous SNV	"Csf3r:NM_001252651:exon15:c.C1821T:p.S607S,Csf3r:NM_007782:exon17:c.C2145T:p.S715S"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.288326894	3	0.8953625	GCT	synonymous	NA	NA	NA	NA
M5	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	56	159	44	0.27672956	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9937614	TAG	synonymous	NA	NA	NA	NA
M5	chr4	126180268	12A2p6	cell line	sgMsh2	126180268	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	124	174	0	0	exonic	Thrap3	synonymous SNV	"Thrap3:NM_146153:exon3:c.C684A:p.T228T,Thrap3:NM_001356455:exon4:c.C684A:p.T228T,Thrap3:NM_001356456:exon4:c.C684A:p.T228T"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.843780174	1	0.9637267	AGG	synonymous	GGT	8	GGTGGTGG	NA
M5	chr4	126355121	12A2p6	cell line	sgMsh2	126355121	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	66	10	0	0	exonic	Ago3	stopgain	Ago3:NM_153402:exon13:c.C1636T:p.Q546X	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9966616	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr4	127935978	12A2p6	cell line	sgMsh2	127935978	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	73	0	0	NA	exonic	CK137956	nonsynonymous SNV	CK137956:NM_001134733:exon6:c.T1544C:p.M515T	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9978467	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	128616904	12A2p6	cell line	sgMsh2	128616904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	40	0	0	NA	exonic	Tlr12	nonsynonymous SNV	Tlr12:NM_205823:exon1:c.C1552A:p.L518M	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.983138	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr4	128909374	12A2p6	cell line	sgMsh2	128909374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	76	1	0	0	exonic	Trim62	nonsynonymous SNV	"Trim62:NM_001370757:exon4:c.A1120G:p.R374G,Trim62:NM_001370756:exon5:c.A1234G:p.R412G,Trim62:NM_178110:exon5:c.A1216G:p.R406G"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9982159	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	21	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9464499	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	53	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9924774	CAT	synonymous	NA	NA	NA	NA
M5	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	69	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9972334	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	65	25	6	0.24	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	119	36	11	0.305555556	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.99988	TTC	synonymous	NA	NA	NA	NA
M5	chr4	132738385	12A2p6	cell line	sgMsh2	132738385	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	71	21	7	0.333333333	exonic	Smpdl3b	nonsynonymous SNV	Smpdl3b:NM_133888:exon6:c.C723A:p.F241L	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9975592	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	25	22	12	0.545454545	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9578486	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	133582986	12A2p6	cell line	sgMsh2	133582986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	34	11	2	0.181818182	exonic	Gpatch3	nonsynonymous SNV	Gpatch3:NM_172876:exon6:c.T1241C:p.I414T	4qD2.3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9756076	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	88	23	4	0.173913043	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9991597	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	52	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9919936	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	42	293	85	0.290102389	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9850991	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	136241469	12A2p6	cell line	sgMsh2	136241469	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	31	4	0	0	exonic	Asap3	nonsynonymous SNV	"Asap3:NM_001008232:exon22:c.G2224A:p.A742T,Asap3:NM_001355698:exon22:c.G1405A:p.A469T"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	9.91E-08	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	86	159	5	0.031446541	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9990473	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	136657505	12A2p6	cell line	sgMsh2	136657505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	92	0	0	NA	exonic	Ephb2	nonsynonymous SNV	"Ephb2:NM_001290753:exon14:c.A2597C:p.K866T,Ephb2:NM_010142:exon14:c.A2594C:p.K865T"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9993462	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	137538433	12A2p6	cell line	sgMsh2	137538433	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	47	40	16	0.4	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon44:c.G5454T:p.M1818I	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9890716	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	101	122	44	0.360655738	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9996285	CTG	synonymous	NA	NA	NA	NA
M5	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	42	33	14	0.424242424	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9850991	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	13	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9144061	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.34	53	1	1	1	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	68	15	4	0.266666667	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9970545	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	65	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9964459	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	51	521	174	0.333973129	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.991479	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	43	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	2	1	1	0.9859936	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	141860564	12A2p6	cell line	sgMsh2	141860564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	33	61	9	0.147540984	exonic	Efhd2	nonsynonymous SNV	Efhd2:NM_025994:exon3:c.A575G:p.N192S	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9740672	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	143135079	12A2p6	cell line	sgMsh2	143135079	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	142	81	20	0.24691358	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.A1640C:p.D547A,Prdm2:NM_001256380:exon8:c.A1640C:p.D547A"	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999717	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	175	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999964	CCT	synonymous	NA	NA	NA	NA
M5	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	64	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9962163	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr4	148948928	12A2p6	cell line	sgMsh2	148948928	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	39	3	0	0	exonic	Casz1	nonsynonymous SNV	Casz1:NM_001159344:exon20:c.G4156T:p.A1386S	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9820644	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr4	149106266	12A2p6	cell line	sgMsh2	149106266	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.263	108	13	2	0.153846154	exonic	Dffa	nonsynonymous SNV	"Dffa:NM_001025296:exon2:c.A251G:p.K84R,Dffa:NM_010044:exon2:c.A251G:p.K84R"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9997606	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	150142827	12A2p6	cell line	sgMsh2	150142827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	27	0	0	NA	exonic	Slc2a5	nonsynonymous SNV	Slc2a5:NM_019741:exon13:c.A1199G:p.E400G	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.784418754	1	0.8064466	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	45	394	96	0.243654822	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416G:p.Y139C	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9876267	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	55	11	0	0	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9933597	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr4	152028192	12A2p6	cell line	sgMsh2	152028192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	43	0	0	NA	exonic	Tas1r1	synonymous SNV	Tas1r1:NM_031867:exon6:c.G2403A:p.L801L	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9859936	TCA	synonymous	NA	NA	NA	NA
M5	chr4	154081548	12A2p6	cell line	sgMsh2	154081548	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	24	0	0	NA	exonic	Trp73	nonsynonymous SNV	"Trp73:NM_001126330:exon2:c.T63G:p.S21R,Trp73:NM_001126331:exon2:c.T63G:p.S21R,Trp73:NM_011642:exon4:c.T186G:p.S62R"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9552378	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	35	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9770586	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	59	5	0	0	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	0.958262911	1	0.9888876	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	159	14	0	0	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9999903	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	86	27	14	0.518518519	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9990473	CAA	synonymous	NA	NA	NA	NA
M5	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	111	1	1	1	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9998017	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr4	156166963	12A2p6	cell line	sgMsh2	156166963	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	28	120	28	0.233333333	exonic	Agrn	synonymous SNV	"Agrn:NM_021604:exon35:c.C5895T:p.G1965G,Agrn:NM_001369026:exon37:c.C5643T:p.G1881G"	4qE2	chr4-3172993-156223608	3	2	1	0.99	4.197700362	NA	1	1	1	0.9648342	AGC	synonymous	NA	NA	NA	NA
M5	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.625	186	13	5	0.384615385	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999982	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	131	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999435	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	132	25	5	0.2	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.631775105	2	0.9953539	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	134	31	8	0.258064516	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.871644	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	67	54	34	0.62962963	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9968642	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	31	20	3	0.15	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	9.91E-08	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	5249050	12A2p6	cell line	sgMsh2	5249050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	129	81	16	0.197530864	exonic	Cdk14	nonsynonymous SNV	"Cdk14:NM_001310448:exon2:c.T164C:p.I55T,Cdk14:NM_011074:exon3:c.T302C:p.I101T"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.999936	AAT	nonsynonymous	ATGC	10	ATGCATGCAT	NA
M5	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	137	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999613	CTT	synonymous	NA	NA	NA	NA
M5	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999395	TAG	synonymous	NA	NA	NA	NA
M5	chr5	8397252	12A2p6	cell line	sgMsh2	8397252	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	74	111	22	0.198198198	exonic	Dbf4	frameshift deletion	"Dbf4:NM_001190717:exon12:c.1954delT:p.S652Lfs*19,Dbf4:NM_013726:exon12:c.1957delT:p.S653Lfs*19"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.449450746	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5	chr5	8452763	12A2p6	cell line	sgMsh2	8452763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	278	27	4	0.148148148	exonic	Slc25a40	nonsynonymous SNV	"Slc25a40:NM_001289595:exon10:c.A844G:p.M282V,Slc25a40:NM_001289596:exon11:c.A655G:p.M219V,Slc25a40:NM_178766:exon11:c.A844G:p.M282V"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	4.86E-08	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	8864141	12A2p6	cell line	sgMsh2	8864141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	215	52	14	0.269230769	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon27:c.A3510C:p.K1170N	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	74	133	32	0.240601504	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9979776	CTG	synonymous	NA	NA	NA	NA
M5	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	112	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.009962947	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	135	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999561	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr5	14681547	12A2p6	cell line	sgMsh2	14681547	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	113	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon6:c.G10062A:p.E3354E,Pclo:NM_011995:exon6:c.G10062A:p.E3354E"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	AGA	synonymous	G	5	GGGGG	NA
M5	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	125	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.9091011	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	20802050	12A2p6	cell line	sgMsh2	20802050	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	66	30	8	0.266666667	exonic	Phtf2	nonsynonymous SNV	Phtf2:NM_172992:exon7:c.G514A:p.A172T	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	141	121	14	0.115702479	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M5	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	217	71	14	0.197183099	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	21942605	12A2p6	cell line	sgMsh2	21942605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	115	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon46:c.A7346G:p.Y2449C	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	26	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9603133	CAT	synonymous	NA	NA	NA	NA
M5	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	66	6	1	0.166666667	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	CAC	synonymous	NA	NA	NA	NA
M5	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.57	48	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9897301	CCT	synonymous	NA	NA	NA	NA
M5	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	43	1	0	0	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9237324	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	25261997	12A2p6	cell line	sgMsh2	25261997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	110	30	14	0.466666667	exonic	Galnt11	synonymous SNV	"Galnt11:NM_001359890:exon9:c.T1296C:p.R432R,Galnt11:NM_144908:exon9:c.T1296C:p.R432R"	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997889	GTG	synonymous	NA	NA	NA	NA
M5	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	161	26	13	0.5	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999914	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	242	20	6	0.3	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GAA	synonymous	NA	NA	NA	NA
M5	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	ATT	nonsynonymous	T	5	TTTTT	NA
M5	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	86	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9990473	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	70	5	0	0	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.674176119	2	0.7663482	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	125	92	18	0.195652174	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.486	99	143	45	0.314685315	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M5	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	186	95	20	0.210526316	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999982	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M5	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	185	98	22	0.224489796	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999981	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M5	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	65	196	52	0.265306122	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	66	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	113	797	220	0.276035132	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	235	25	12	0.48	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999999	CAG	synonymous	NA	NA	NA	NA
M5	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	200	39	16	0.41025641	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999973	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M5	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	138	18	6	0.333333333	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	109	6	1	0.166666667	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997752	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	33607752	12A2p6	cell line	sgMsh2	33607752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	54	25	2	0.08	exonic	Fam53a	synonymous SNV	"Fam53a:NM_001359461:exon4:c.T609C:p.S203S,Fam53a:NM_001359462:exon5:c.T609C:p.S203S,Fam53a:NM_178390:exon5:c.T609C:p.S203S,Fam53a:NM_001359463:exon6:c.T339C:p.S113S"	5qB1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.896754	CAC	synonymous	NA	NA	NA	NA
M5	chr5	33671713	12A2p6	cell line	sgMsh2	33671713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	44	216	48	0.222222222	exonic	Tacc3	synonymous SNV	"Tacc3:NM_001040435:exon14:c.A1755G:p.V585V,Tacc3:NM_001310541:exon14:c.A1776G:p.V592V"	5qB2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9398916	TAC	synonymous	NA	NA	NA	NA
M5	chr5	34500920	12A2p6	cell line	sgMsh2	34500920	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	132	26	8	0.307692308	exonic	Tnip2	nonsynonymous SNV	Tnip2:NM_139064:exon3:c.G648T:p.Q216H	5qB2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9998525	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	188	29	6	0.206896552	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999984	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	48	51	2	0.039215686	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7574211	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	37370632	12A2p6	cell line	sgMsh2	37370632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	98	0	0	NA	exonic	Evc2	synonymous SNV	Evc2:NM_145920:exon8:c.T984C:p.G328G	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	GTC	synonymous	NA	NA	NA	NA
M5	chr5	38673669	12A2p6	cell line	sgMsh2	38673669	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	137	4	0	0	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.C992T:p.P331L,Zfp518b:NM_001081144:exon4:c.C992T:p.P331L"	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9695501	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	43736066	12A2p6	cell line	sgMsh2	43736066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	69	29	3	0.103448276	exonic	Cc2d2a	synonymous SNV	"Cc2d2a:NM_001359905:exon35:c.A4350G:p.P1450P,Cc2d2a:NM_001359906:exon35:c.A4350G:p.P1450P,Cc2d2a:NM_001359903:exon36:c.A4371G:p.P1457P,Cc2d2a:NM_001359904:exon36:c.A4365G:p.P1455P,Cc2d2a:NM_172274:exon37:c.A4386G:p.P1462P"	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.623294902	2	0.0955673	CAC	synonymous	NA	NA	NA	NA
M5	chr5	48388106	12A2p6	cell line	sgMsh2	48388106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	275	38	7	0.184210526	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon9:c.A694G:p.S232G	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9998804	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	49960319	12A2p6	cell line	sgMsh2	49960319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	129	91	36	0.395604396	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3886G:p.T1296A	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.792898957	1	0.7850178	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	111	71	18	0.253521127	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998017	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	76	427	69	0.161592506	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	163	135	37	0.274074074	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999924	GTT	nonsynonymous	G	5	GGGGG	NA
M5	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	209	34	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.702217	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	62748989	12A2p6	cell line	sgMsh2	62748989	T	-	Deletion	Strelka2;Vardict	2	0.1926	270	8	2	0.25	exonic	Arap2	frameshift deletion	Arap2:NM_178407:exon2:c.686delA:p.N229Tfs*6	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.816643525	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5	chr5	63804939	12A2p6	cell line	sgMsh2	63804939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	160	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A1865G:p.H622R	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999909	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	178	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9861821	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	65030114	12A2p6	cell line	sgMsh2	65030114	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	98	151	38	0.251655629	exonic	Fam114a1	nonsynonymous SNV	Fam114a1:NM_026667:exon10:c.C1214T:p.S405L	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	86	1349	294	0.217939214	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.792898957	1	0.7991698	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	65637841	12A2p6	cell line	sgMsh2	65637841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	140	205	54	0.263414634	exonic	Pds5a	nonsynonymous SNV	Pds5a:NM_001081321:exon19:c.A2051G:p.Q684R	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9967695	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	78	144	61	0.423611111	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9984262	GTA	synonymous	NA	NA	NA	NA
M5	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	99	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	68155875	12A2p6	cell line	sgMsh2	68155875	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	135	0	0	NA	exonic	Grxcr1	nonsynonymous SNV	Grxcr1:NM_001018019:exon3:c.C694A:p.L232I	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999561	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	147	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.999964	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	52	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	191	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999987	TAT	synonymous	NA	NA	NA	NA
M5	chr5	75640733	12A2p6	cell line	sgMsh2	75640733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	124	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon11:c.A1691G:p.E564G,Kit:NM_021099:exon11:c.A1679G:p.E560G"	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999124	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	147	28	16	0.571428571	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999793	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.836	92	23	11	0.47826087	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M5	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	8	2	0.25	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7399767	ATG	synonymous	NA	NA	NA	NA
M5	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	141	70	14	0.2	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.7472605	CTG	synonymous	NA	NA	NA	NA
M5	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	80	145	30	0.206896552	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	ATT	synonymous	NA	NA	NA	NA
M5	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	94	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9994234	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	127	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9997278	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	145	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	87486579	12A2p6	cell line	sgMsh2	87486579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	110	0	0	NA	exonic	Ugt2a1	synonymous SNV	Ugt2a1:NM_053184:exon2:c.C168T:p.S56S	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997889	CGG	synonymous	NA	NA	NA	NA
M5	chr5	87521609	12A2p6	cell line	sgMsh2	87521609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	0	0	NA	exonic	Sult1b1	nonsynonymous SNV	"Sult1b1:NM_001382837:exon4:c.A379G:p.I127V,Sult1b1:NM_001356943:exon5:c.A379G:p.I127V,Sult1b1:NM_019878:exon5:c.A379G:p.I127V"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9859936	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	155	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999875	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	129	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.999936	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	108	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	87930167	12A2p6	cell line	sgMsh2	87930167	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	exonic	Csn3	synonymous SNV	"Csn3:NM_001356571:exon3:c.C501A:p.S167S,Csn3:NM_001356570:exon4:c.C531A:p.S177S,Csn3:NM_007786:exon4:c.C531A:p.S177S"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.9091011	CCT	synonymous	NA	NA	NA	NA
M5	chr5	88328605	12A2p6	cell line	sgMsh2	88328605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	136	0	0	NA	exonic	Prol1	nonsynonymous SNV	Prol1:NM_008644:exon3:c.A853G:p.T285A	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.999952	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	174	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9988267	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	130	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999399	AAG	synonymous	NA	NA	NA	NA
M5	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	125	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999177	AAC	synonymous	A	5	AAAAA	NA
M5	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	183	7	0	0	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999978	CTG	synonymous	NA	NA	NA	NA
M5	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	128	292	138	0.47260274	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999318	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr5	92039286	12A2p6	cell line	sgMsh2	92039286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	211	40	14	0.35	exonic	Cdkl2	synonymous SNV	"Cdkl2:NM_001276315:exon2:c.T120C:p.D40D,Cdkl2:NM_016912:exon2:c.T120C:p.D40D,Cdkl2:NM_177270:exon2:c.T120C:p.D40D"	5qE2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	CAT	synonymous	NA	NA	NA	NA
M5	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	275	73	15	0.205479452	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.99996	CTG	synonymous	NA	NA	NA	NA
M5	chr5	92454754	12A2p6	cell line	sgMsh2	92454754	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	117	251	51	0.203187251	exonic	Scarb2	nonsynonymous SNV	Scarb2:NM_007644:exon6:c.C802T:p.L268F	5qE2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	99964721	12A2p6	cell line	sgMsh2	99964721	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	102	682	149	0.218475073	exonic	Hnrnpd	synonymous SNV	"Hnrnpd:NM_001077266:exon4:c.G645A:p.E215E,Hnrnpd:NM_001077267:exon4:c.G645A:p.E215E,Hnrnpd:NM_001077265:exon5:c.G702A:p.E234E,Hnrnpd:NM_007516:exon5:c.G702A:p.E234E"	5qE4	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.8834896	GCT	synonymous	NA	NA	NA	NA
M5	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	46	214	58	0.271028037	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.725057335	1	0.6187787	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	101851258	12A2p6	cell line	sgMsh2	101851258	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	50	21	4	0.19047619	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon60:c.G9291A:p.K3097K	5qE4	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	GCT	synonymous	NA	NA	NA	NA
M5	chr5	101872900	12A2p6	cell line	sgMsh2	101872900	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	39	49	10	0.204081633	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon46:c.G7483T:p.G2495C	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9820644	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	93	30	7	0.233333333	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	136	44	8	0.181818182	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	0.8773255	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	132	44	10	0.227272727	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9804803	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	217	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	164	110	22	0.2	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999929	AAG	synonymous	NA	NA	NA	NA
M5	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	86	80	27	0.3375	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.742017741	1	0.5029119	ATA	synonymous	NA	NA	NA	NA
M5	chr5	106619558	12A2p6	cell line	sgMsh2	106619558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	198	60	11	0.183333333	exonic	Zfp644	nonsynonymous SNV	"Zfp644:NM_001363323:exon5:c.T3593C:p.V1198A,Zfp644:NM_001363320:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363321:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363322:exon6:c.T3635C:p.V1212A,Zfp644:NM_026856:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363319:exon7:c.T3668C:p.V1223A,Zfp644:NM_001363318:exon9:c.T3668C:p.V1223A"	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	119	21	5	0.238095238	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.534252773	2	0.9996364	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.561	133	24	4	0.166666667	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999502	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	38	8	3	0.375	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.767458349	1	0.7639504	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr5	109453011	12A2p6	cell line	sgMsh2	109453011	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	328	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon6:c.C2174T:p.T725I,Vmn2r17:NM_001385190:exon6:c.C2171T:p.T724I"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	1.24E-09	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr5	110100217	12A2p6	cell line	sgMsh2	110100217	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.314	56	0	0	NA	exonic	Plcxd1	frameshift insertion	Plcxd1:NM_207279:exon2:c.31_32insA:p.P11Hfs*15	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ACC	frameshift	CCCCA	14	CCCCACCCCACCCC	1
M5	chr5	110124414	12A2p6	cell line	sgMsh2	110124414	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	253	27	12	0.444444444	exonic	Zfp605	nonsynonymous SNV	Zfp605:NM_001163996:exon4:c.G198T:p.M66I	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	2.75E-08	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	18	6	0.333333333	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	110370976	12A2p6	cell line	sgMsh2	110370976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	65	20	5	0.25	exonic	Fbrsl1	synonymous SNV	"Fbrsl1:NM_028596:exon11:c.T918C:p.P306P,Fbrsl1:NM_001142642:exon18:c.T2232C:p.P744P"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	CAG	synonymous	NA	NA	NA	NA
M5	chr5	110668744	12A2p6	cell line	sgMsh2	110668744	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	36	19	3	0.157894737	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon47:c.C8180T:p.T2727I,Ep400:NM_029337:exon48:c.C8288T:p.T2763I"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9784253	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr5	110735372	12A2p6	cell line	sgMsh2	110735372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	107	58	14	0.24137931	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon5:c.A2087G:p.K696R,Ep400:NM_029337:exon6:c.A2195G:p.K732R"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.6523048	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	112782599	12A2p6	cell line	sgMsh2	112782599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	125	0	0	NA	exonic	Myo18b	nonsynonymous SNV	Myo18b:NM_028901:exon33:c.A5470G:p.T1824A	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	84	87	20	0.229885057	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.9241274	GTG	synonymous	NA	NA	NA	NA
M5	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	83	1	0	0	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9988499	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	56	123	57	0.463414634	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9937614	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	47	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.8892171	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr5	117893925	12A2p6	cell line	sgMsh2	117893925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	18	0	0	NA	exonic	Nos1	nonsynonymous SNV	Nos1:NM_008712:exon3:c.A937G:p.T313A	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9360476	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	118593540	12A2p6	cell line	sgMsh2	118593540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	138	28	9	0.321428571	exonic	Med13l	nonsynonymous SNV	"Med13l:NM_001347445:exon2:c.C280A:p.L94I,Med13l:NM_172424:exon2:c.C280A:p.L94I"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	20	3	0.15	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9982159	CTT	synonymous	NA	NA	NA	NA
M5	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	26	6	2	0.333333333	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9603133	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	53	28	1	0.035714286	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.911621796	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr5	121519747	12A2p6	cell line	sgMsh2	121519747	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	206	3	0	0	exonic	Adam1a	synonymous SNV	Adam1a:NM_172126:exon1:c.C1482T:p.C494C	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999995	GGC	synonymous	NA	NA	NA	NA
M5	chr5	121828483	12A2p6	cell line	sgMsh2	121828483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	16	4	2	0.5	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.A567G:p.A189A,Sh2b3:NM_008507:exon2:c.A567G:p.A189A,Sh2b3:NM_001306126:exon3:c.A567G:p.A189A,Sh2b3:NM_001306127:exon3:c.A567G:p.A189A"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9280901	GTG	synonymous	NA	NA	NA	NA
M5	chr5	122101802	12A2p6	cell line	sgMsh2	122101802	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	142	0	0	NA	exonic	Myl2	synonymous SNV	"Myl2:NM_001384326:exon2:c.C57T:p.S19S,Myl2:NM_010861:exon2:c.C57T:p.S19S"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.0987373	CCA	synonymous	NA	NA	NA	NA
M5	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	61	8	3	0.375	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9954353	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	123512548	12A2p6	cell line	sgMsh2	123512548	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.276	67	121	0	0	exonic	Diablo	frameshift insertion	Diablo:NM_023232:exon6:c.676dupG:p.A226Gfs*1	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	AGC	frameshift	C	5	CCCCC	1
M5	chr5	123520048	12A2p6	cell line	sgMsh2	123520048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	129	90	8	0.088888889	exonic	Diablo	nonsynonymous SNV	Diablo:NM_023232:exon3:c.A302G:p.Y101C	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.999936	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	138	62	25	0.403225806	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999636	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	151	56	19	0.339285714	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	73	39	17	0.435897436	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	108	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	GTG	nonsynonymous	G	5	GGGGG	NA
M5	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	70	1	0	0	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	124123005	12A2p6	cell line	sgMsh2	124123005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	45	9	3	0.333333333	exonic	Pitpnm2	synonymous SNV	"Pitpnm2:NM_001289472:exon21:c.A3105G:p.S1035S,Pitpnm2:NM_011256:exon21:c.A2943G:p.S981S"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9876267	CTG	synonymous	NA	NA	NA	NA
M5	chr5	124392958	12A2p6	cell line	sgMsh2	124392958	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	115	142	5	0.035211268	exonic	Sbno1	frameshift deletion	"Sbno1:NM_001081203:exon18:c.2366delA:p.K789Rfs*4,Sbno1:NM_001359978:exon18:c.2366delA:p.K789Rfs*4,Sbno1:NM_001359979:exon18:c.2363delA:p.K788Rfs*4"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	TTC	8	TTCTTCTT	-1
M5	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	151	192	42	0.21875	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	AAA	synonymous	NA	NA	NA	NA
M5	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	155	163	62	0.380368098	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9979331	TAC	synonymous	NA	NA	NA	NA
M5	chr5	128742036	12A2p6	cell line	sgMsh2	128742036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	85	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon7:c.G578T:p.R193M	5qG1.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.691136524	2	0.7898415	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	129902624	12A2p6	cell line	sgMsh2	129902624	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	165	3	0	0	exonic	Zbed5	synonymous SNV	"Zbed5:NM_183088:exon4:c.A1413C:p.R471R,Zbed5:NM_001359408:exon5:c.A1350C:p.R450R"	5qG1.3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9912201	GAC	synonymous	NA	NA	NA	NA
M5	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	91	16	3	0.1875	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	1	1	1	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.999843	TAC	synonymous	NA	NA	NA	NA
M5	chr5	135961956	12A2p6	cell line	sgMsh2	135961956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	84	7	1	0.142857143	exonic	Ssc4d	synonymous SNV	Ssc4d:NM_001160366:exon10:c.A1377G:p.E459E	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989199	GTT	synonymous	NA	NA	NA	NA
M5	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	191	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9999738	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr5	136064148	12A2p6	cell line	sgMsh2	136064148	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	66	7	2	0.285714286	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.C727A:p.L243I,Upk3bl:NM_027158:exon6:c.C730A:p.L244I"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9660361	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr5	137031954	12A2p6	cell line	sgMsh2	137031954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	17	0	0	NA	exonic	Vgf	synonymous SNV	Vgf:NM_001039385:exon2:c.A969G:p.Q323Q	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9321778	AAG	synonymous	NA	NA	NA	NA
M5	chr5	137563146	12A2p6	cell line	sgMsh2	137563146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	134	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon5:c.A409G:p.M137V	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr5	137577754	12A2p6	cell line	sgMsh2	137577754	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	41	1	0	0	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon8:c.C1040T:p.P347L,Tfr2:NM_001289511:exon9:c.C1040T:p.P347L,Tfr2:NM_001359206:exon9:c.C1040T:p.P347L,Tfr2:NM_001289509:exon10:c.C1040T:p.P347L,Tfr2:NM_015799:exon10:c.C1040T:p.P347L"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9794672	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	123	53	19	0.358490566	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999067	AGG	synonymous	NA	NA	NA	NA
M5	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	102	2	1	0.5	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9977319	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	157	56	13	0.232142857	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9989567	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr5	138163817	12A2p6	cell line	sgMsh2	138163817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	135	285	63	0.221052632	exonic	Cops6	nonsynonymous SNV	Cops6:NM_012002:exon10:c.T916C:p.F306L	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9687171	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	170	31	17	0.548387097	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999951	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	108	108	29	0.268518519	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	CTT	synonymous	NA	NA	NA	NA
M5	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	83	7071	1515	0.214255409	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M5	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	39	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.631775105	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	80	642	147	0.228971963	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.894375	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	75	573	143	0.2495637	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9835409	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr5	145986842	12A2p6	cell line	sgMsh2	145986842	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	187	0	0	NA	exonic	Cyp3a25	frameshift deletion	Cyp3a25:NM_019792:exon10:c.990delA:p.K330Nfs*20	5qG2	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.996423823	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	210	67	42	0.626865672	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999996	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	86	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	0.7112226	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	119	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344373-151647482	4	2	2	0.99	4.197700362	NA	1	0.758978146	1	0.5129562	TAC	synonymous	NA	NA	NA	NA
M5	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.472	86	80	5	0.0625	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M5	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	223	14	3	0.214285714	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.80137916	1	0.845414	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.826819768	1	0.9364618	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M5	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.474891354	2	0.9967969	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	168	50	9	0.18	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.826819768	1	0.9526047	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M5	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	233	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999999	TGC	synonymous	NA	NA	NA	NA
M5	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	52	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	0.983703519	1	0.9895874	AAG	synonymous	NA	NA	NA	NA
M5	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	49	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	0.987943621	1	0.9884122	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	150	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.521532469	2	0.9999201	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	174	397	65	0.16372796	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.661455815	2	0.9974078	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.233	106	670	109	0.162686567	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	0.987943621	1	0.9995952	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M5	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	100	370	45	0.121621622	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.530012672	2	0.9985577	CAC	synonymous	NA	NA	NA	NA
M5	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1812	149	84	1	0.011904762	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.768306369	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	98	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.542732976	2	0.9979724	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M5	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	233	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.712337031	2	0.9917348	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.877700985	1	0.9923553	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	15403822	12A2p6	cell line	sgMsh2	15403822	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	218	0	0	NA	exonic	Foxp2	frameshift deletion	"Foxp2:NM_001286607:exon9:c.1034delT:p.N346Tfs*23,Foxp2:NM_212435:exon9:c.1097delT:p.N367Tfs*23,Foxp2:NM_053242:exon11:c.1097delT:p.N367Tfs*23"	6qA1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.691136524	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	168	70	9	0.128571429	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.814099464	1	0.9114821	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	17563555	12A2p6	cell line	sgMsh2	17563555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	134	120	17	0.141666667	exonic	Met	synonymous SNV	Met:NM_008591:exon20:c.T3628C:p.L1210L	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9987906	GTT	synonymous	NA	NA	NA	NA
M5	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	219	805	106	0.131677019	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.9146774	GTT	synonymous	NA	NA	NA	NA
M5	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	218	763	108	0.141546527	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.792898957	1	0.7534743	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	18319747	12A2p6	cell line	sgMsh2	18319747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	152	5	0	0	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon26:c.G4196T:p.R1399M	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.9975572	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	319	4	0	0	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.818339565	1	0.9693858	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	21216494	12A2p6	cell line	sgMsh2	21216494	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	208	0	0	NA	exonic	Kcnd2	synonymous SNV	Kcnd2:NM_019697:exon1:c.C196T:p.L66L	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	0.9999905	TCT	synonymous	NA	NA	NA	NA
M5	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	129	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.64873551	2	0.9892823	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.678	182	134	85	0.634328358	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	4	1	1	0.9999977	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M5	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	246	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.780178653	1	0.52047	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr6	25669521	12A2p6	cell line	sgMsh2	25669521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	166	0	0	NA	exonic	Gpr37	synonymous SNV	Gpr37:NM_010338:exon2:c.C1323T:p.P441P	6qA3.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.623294902	2	0.9994948	TGG	synonymous	NA	NA	NA	NA
M5	chr6	25764252	12A2p6	cell line	sgMsh2	25764252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	87	2	0	0	exonic	Pot1a	frameshift deletion	Pot1a:NM_133931:exon9:c.875delA:p.A293Lfs*1	6qA3.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr6	29380157	12A2p6	cell line	sgMsh2	29380157	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	98	0	0	NA	exonic	Opn1sw	nonsynonymous SNV	Opn1sw:NM_007538:exon1:c.T259G:p.F87V	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	0.9948756	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	29447598	12A2p6	cell line	sgMsh2	29447598	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	93	31	7	0.225806452	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon21:c.T3399C:p.N1133N,Flnc:NM_001311074:exon21:c.T3399C:p.N1133N"	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.8631343	ATA	synonymous	NA	NA	NA	NA
M5	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	166	29	1	0.034482759	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.576653787	2	0.999955	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.149	63	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.8518712	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	135	88	12	0.136363636	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.758978146	2	0.5374313	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	266	228	48	0.210526316	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.712337031	2	0.9966163	AAC	nonsynonymous	A	5	AAAAA	NA
M5	chr6	34798229	12A2p6	cell line	sgMsh2	34798229	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	181	2	0	0	exonic	Agbl3	frameshift deletion	"Agbl3:NM_178630:exon6:c.454delG:p.G153Vfs*5,Agbl3:NM_001289656:exon7:c.469delG:p.G158Vfs*5"	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.699616727	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	164	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.644495409	2	0.9983276	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	36743494	12A2p6	cell line	sgMsh2	36743494	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	76	0	0	NA	exonic	Ptn	frameshift deletion	Ptn:NM_008973:exon3:c.122delA:p.K41Rfs*1	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.742017741	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	199	11	0	0	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.415529935	3	0.5411731	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	425	34	5	0.147058824	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.997681	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	71	302	39	0.129139073	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.674176119	2	0.7732863	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M5	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	50	4	4	1	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.9243421	1	0.9709691	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	38	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	0.945542607	1	0.9641675	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	40516153	12A2p6	cell line	sgMsh2	40516153	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	274	0	0	NA	exonic	Prss37	synonymous SNV	Prss37:NM_026317:exon4:c.G378T:p.R126R	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999998	GCC	synonymous	NA	NA	NA	NA
M5	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	330	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.890421289	1	0.9999827	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	220	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.610574598	2	0.9999892	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	198	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.720817234	2	0.9647525	CTT	synonymous	NA	NA	NA	NA
M5	chr6	41033155	12A2p6	cell line	sgMsh2	41033155	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	194	0	0	NA	exonic	2210010C04Rik	nonsynonymous SNV	2210010C04Rik:NM_023333:exon3:c.C244A:p.L82I	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.9817211	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	459	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.754738045	2	0.9922047	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	167	3	1	0.333333333	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.754738045	2	0.6846662	TTG	synonymous	NA	NA	NA	NA
M5	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.138	73	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.58513399	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5	chr6	42350378	12A2p6	cell line	sgMsh2	42350378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	19	73	7	0.095890411	exonic	Zyx	nonsynonymous SNV	"Zyx:NM_001289617:exon2:c.A110T:p.N37I,Zyx:NM_001289618:exon2:c.A110T:p.N37I,Zyx:NM_001289619:exon2:c.A110T:p.N37I,Zyx:NM_011777:exon2:c.A110T:p.N37I"	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	1	1	0.9397096	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	127	214	25	0.11682243	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.937062404	1	0.9991151	ACG	synonymous	NA	NA	NA	NA
M5	chr6	42460583	12A2p6	cell line	sgMsh2	42460583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	426	0	0	NA	exonic	Olfr458	synonymous SNV	Olfr458:NM_146444:exon1:c.A435G:p.A145A	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M5	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	135	60	4	0.066666667	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.483371557	2	0.997466	ATG	synonymous	NA	NA	NA	NA
M5	chr6	42686617	12A2p6	cell line	sgMsh2	42686617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	263	127	25	0.196850394	exonic	Tcaf1	nonsynonymous SNV	"Tcaf1:NM_001355768:exon2:c.A328G:p.I110V,Tcaf1:NM_001355769:exon2:c.A328G:p.I110V,Tcaf1:NM_029930:exon2:c.A328G:p.I110V,Tcaf1:NM_001355770:exon3:c.A328G:p.I110V"	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.517292368	2	0.9999992	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	110	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.839540072	1	0.9497318	ATG	nonsynonymous	G	5	GGGGG	NA
M5	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	175	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.669936017	2	0.996055	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	388	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.797139059	1	0.7845284	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	46015235	12A2p6	cell line	sgMsh2	46015235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	147	0	0	NA	exonic	Cntnap2	synonymous SNV	Cntnap2:NM_001004357:exon8:c.T1095C:p.S365S	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9978784	GTT	synonymous	NA	NA	NA	NA
M5	chr6	46015479	12A2p6	cell line	sgMsh2	46015479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	124	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon8:c.A1339G:p.I447V	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.657215713	2	0.9813008	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	168	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9873357	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	46988685	12A2p6	cell line	sgMsh2	46988685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	211	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon16:c.T2429C:p.L810P	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.780178653	1	0.5722973	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	147	14	0	0	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	0.9978784	TAG	synonymous	NA	NA	NA	NA
M5	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	47	31	2	0.064516129	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.674176119	2	7.11E-05	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	48044616	12A2p6	cell line	sgMsh2	48044616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	190	41	6	0.146341463	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon2:c.C203T:p.P68L,Zfp777:NM_001347139:exon2:c.C71T:p.P24L"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.733537538	2	0.9134591	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	60	47	9	0.191489362	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.436730442	2	0.9284971	GTG	synonymous	NA	NA	NA	NA
M5	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	95	14	5	0.357142857	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	2	1	1	0.9994585	CCC	synonymous	NA	NA	NA	NA
M5	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	72	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.932822303	1	0.9896673	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.606334497	2	0.9712144	GTC	synonymous	NA	NA	NA	NA
M5	chr6	48485453	12A2p6	cell line	sgMsh2	48485453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	69	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon74:c.C11157A:p.T3719T	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.46217105	2	0.9703657	CCT	synonymous	NA	NA	NA	NA
M5	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	63	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.5609265	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	135	2	0	0	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.725057335	2	0.8296527	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	48835600	12A2p6	cell line	sgMsh2	48835600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	196	5	0	0	exonic	Tmem176b	synonymous SNV	"Tmem176b:NM_001164207:exon5:c.T430C:p.L144L,Tmem176b:NM_001164208:exon5:c.T430C:p.L144L,Tmem176b:NM_001286652:exon5:c.T430C:p.L144L,Tmem176b:NM_023056:exon5:c.T430C:p.L144L,Tmem176b:NM_001164209:exon6:c.T430C:p.L144L,Tmem176b:NM_001286651:exon6:c.T430C:p.L144L"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.525772571	2	0.9999943	AAG	synonymous	NA	NA	NA	NA
M5	chr6	48836315	12A2p6	cell line	sgMsh2	48836315	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	86	2	0	0	exonic	Tmem176b	nonsynonymous SNV	"Tmem176b:NM_001164207:exon3:c.T209C:p.L70P,Tmem176b:NM_001164208:exon3:c.T209C:p.L70P,Tmem176b:NM_001286652:exon3:c.T209C:p.L70P,Tmem176b:NM_023056:exon3:c.T209C:p.L70P,Tmem176b:NM_001164209:exon4:c.T209C:p.L70P,Tmem176b:NM_001286651:exon4:c.T209C:p.L70P"	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.805619261	1	0.8485766	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	124	14	2	0.142857143	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.665695916	2	9.80E-09	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	43	2	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.869220782	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	61	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.920101999	1	0.9793567	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	176	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.832219	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr6	56850697	12A2p6	cell line	sgMsh2	56850697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	224	349	55	0.157593123	exonic	Fkbp9	nonsynonymous SNV	Fkbp9:NM_012056:exon3:c.T502C:p.F168L	6qB3	chr6-3373003-56898101	6	4	2	0.99	4.197700362	NA	1	0.593614193	2	0.9999974	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	406	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.742017741	2	0.9967432	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	300	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.597854294	2	2.99E-08	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	57522835	12A2p6	cell line	sgMsh2	57522835	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	146	50	5	0.1	exonic	Ppm1k	nonsynonymous SNV	Ppm1k:NM_175523:exon3:c.G455T:p.R152L	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.580893888	2	0.9997803	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	146	9	5	0.555555556	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.742017741	2	0.7434049	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	211	7	0	0	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.818339565	1	0.9432785	GAC	synonymous	NA	NA	NA	NA
M5	chr6	57659700	12A2p6	cell line	sgMsh2	57659700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	126	13	2	0.153846154	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon19:c.T2400C:p.C800C	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.402809631	2	0.5047659	GTG	synonymous	NA	NA	NA	NA
M5	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	187	42	0	0	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.46217105	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	194	43	0	0	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.49185176	2	0.9997501	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr6	57844095	12A2p6	cell line	sgMsh2	57844095	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	298	0	0	NA	exonic	Vmn1r21	frameshift deletion	Vmn1r21:NM_134183:exon1:c.363delA:p.K121Nfs*2	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.797139059	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	343	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.652975612	2	0.9999993	GTA	nonsynonymous	T	5	TTTTT	NA
M5	chr6	58665255	12A2p6	cell line	sgMsh2	58665255	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	178	10	0	0	exonic	Abcg2	nonsynonymous SNV	"Abcg2:NM_001381927:exon5:c.A527C:p.K176T,Abcg2:NM_011920:exon5:c.A527C:p.K176T,Abcg2:NM_001355477:exon6:c.A527C:p.K176T,Abcg2:NM_001381925:exon6:c.A527C:p.K176T,Abcg2:NM_001381926:exon6:c.A527C:p.K176T"	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.70809693	2	0.9714445	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	169	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.657215713	2	0.9974299	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	153	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.77169845	1	0.5577451	CCT	synonymous	NA	NA	NA	NA
M5	chr6	64729708	12A2p6	cell line	sgMsh2	64729708	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	60	0	0	NA	exonic	Atoh1	nonsynonymous SNV	Atoh1:NM_007500:exon1:c.A386T:p.K129M	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	2	1	1	0.9951408	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	65056521	12A2p6	cell line	sgMsh2	65056521	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	194	90	11	0.122222222	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001355250:exon4:c.A487T:p.T163S,Smarcad1:NM_007958:exon4:c.A487T:p.T163S"	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.682656321	2	0.9960426	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	65123582	12A2p6	cell line	sgMsh2	65123582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	303	2	0	0	exonic	Hpgds	synonymous SNV	Hpgds:NM_019455:exon5:c.C411T:p.D137D	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.496091861	2	0.9999945	TGT	synonymous	NA	NA	NA	NA
M5	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.065	391	581	2	0.003442341	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.275606589	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	404	630	104	0.165079365	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-56956255-70704451	5	4	1	0.99	4.197700362	NA	1	0.496091861	2	0.9999998	CTG	synonymous	NA	NA	NA	NA
M5	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	131	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.814099464	1	0.896631	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	264	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.729297437	2	0.9856515	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	213	161	24	0.149068323	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	2	0.9999114	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	145	106	8	0.075471698	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.440970543	2	0.9388568	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	89	21	3	0.142857143	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.8114347	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	150	258	49	0.189922481	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.58513399	2	0.9997963	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr6	76882551	12A2p6	cell line	sgMsh2	76882551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	136	0	0	NA	exonic	Ctnna2	stoploss	"Ctnna2:NM_001355193:exon18:c.A2717G:p.X906W,Ctnna2:NM_009819:exon19:c.A2861G:p.X954W,Ctnna2:NM_145732:exon19:c.A2717G:p.X906W,Ctnna2:NM_001109764:exon20:c.A2861G:p.X954W"	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.7077559	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	77653171	12A2p6	cell line	sgMsh2	77653171	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	61	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon4:c.G299A:p.G100D,Ctnna2:NM_009819:exon4:c.G299A:p.G100D,Ctnna2:NM_001109764:exon5:c.G299A:p.G100D,Ctnna2:NM_145732:exon5:c.G299A:p.G100D"	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.864980681	1	0.9430633	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr6	78382294	12A2p6	cell line	sgMsh2	78382294	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	198	0	0	NA	exonic	Reg3a	synonymous SNV	Reg3a:NM_011259:exon4:c.G276A:p.V92V	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.767458349	2	0.6033079	TGA	synonymous	NA	NA	NA	NA
M5	chr6	78467548	12A2p6	cell line	sgMsh2	78467548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	177	0	0	NA	exonic	Reg3g	synonymous SNV	Reg3g:NM_011260:exon4:c.C261T:p.F87F	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.970642	GGA	synonymous	AGGA	10	AGGAAGGAAG	NA
M5	chr6	80022136	12A2p6	cell line	sgMsh2	80022136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	149	0	0	NA	exonic	Lrrtm4	frameshift deletion	"Lrrtm4:NM_001134743:exon2:c.530delT:p.Q179Kfs*27,Lrrtm4:NM_001282102:exon2:c.530delT:p.Q179Kfs*27,Lrrtm4:NM_001347261:exon2:c.527delT:p.Q178Kfs*27,Lrrtm4:NM_178731:exon2:c.527delT:p.Q178Kfs*27"	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.797139059	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	137	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9632376	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	71	46	12	0.260869565	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.470651253	2	0.9783346	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	123	2	1	0.5	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.877700985	1	0.9897642	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	83183086	12A2p6	cell line	sgMsh2	83183086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	274	222	26	0.117117117	exonic	Dctn1	nonsynonymous SNV	"Dctn1:NM_001198866:exon3:c.A256G:p.T86A,Dctn1:NM_001198867:exon3:c.A256G:p.T86A,Dctn1:NM_007835:exon3:c.A307G:p.T103A"	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.606334497	2	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	99	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.7329404	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	85467134	12A2p6	cell line	sgMsh2	85467134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	107	994	154	0.154929577	exonic	Cct7	nonsynonymous SNV	Cct7:NM_007638:exon10:c.T1178C:p.I393T	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.09880276	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr6	85808552	12A2p6	cell line	sgMsh2	85808552	G	T	SNV	Mutect2;MuSe;Vardict	3	0.101	162	0	0	NA	exonic	Nat8f6	nonsynonymous SNV	Nat8f6:NM_001201389:exon3:c.C614A:p.S205Y	6qC3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.428250239	2	0.8256634	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	69	104	11	0.105769231	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.784418754	1	0.7741636	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	288	405	81	0.2	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.767458349	2	0.788477	CAA	synonymous	NA	NA	NA	NA
M5	chr6	86462625	12A2p6	cell line	sgMsh2	86462625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	262	26	4	0.153846154	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon8:c.T1267C:p.Y423H,C87436:NM_001243742:exon8:c.T1297C:p.Y433H,C87436:NM_001364555:exon8:c.T1297C:p.Y433H,C87436:NM_001364556:exon8:c.T1297C:p.Y433H,C87436:NM_001364557:exon8:c.T1297C:p.Y433H,C87436:NM_001364558:exon8:c.T1267C:p.Y423H,C87436:NM_146170:exon8:c.T1297C:p.Y433H"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.627535004	2	0.9999964	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	87288801	12A2p6	cell line	sgMsh2	87288801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	277	40	10	0.25	exonic	Antxr1	nonsynonymous SNV	Antxr1:NM_054041:exon4:c.T329C:p.V110A	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.55545328	2	4.12E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	186	48	12	0.25	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.750497943	2	0.7836429	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M5	chr6	87779444	12A2p6	cell line	sgMsh2	87779444	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	76	0	0	NA	exonic	Gp9	nonsynonymous SNV	Gp9:NM_018762:exon2:c.G440A:p.G147E	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.814099464	1	0.8704976	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	87904860	12A2p6	cell line	sgMsh2	87904860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	125	611	77	0.126022913	exonic	Copg1	nonsynonymous SNV	Copg1:NM_017477:exon17:c.T1693C:p.Y565H	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.572413686	2	0.999334	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	122	99	14	0.141414141	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.589374091	2	0.9984382	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	56	46	10	0.217391304	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.530012672	2	0.9561655	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	88376284	12A2p6	cell line	sgMsh2	88376284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	177	65	10	0.153846154	exonic	Eefsec	nonsynonymous SNV	Eefsec:NM_023060:exon2:c.A402G:p.I134M	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.746257842	2	0.7997095	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	42	2	0	0	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.886181188	1	9.91E-08	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	89323308	12A2p6	cell line	sgMsh2	89323308	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	134	239	56	0.234309623	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon27:c.C4792A:p.L1598I	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.763218248	1	0.5101055	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	338	36	7	0.194444444	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.80137916	1	0.8550024	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	159	88	14	0.159090909	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.9284223	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	79	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.674176119	2	0.8234956	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr6	93694158	12A2p6	cell line	sgMsh2	93694158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	213	55	2	0.036363636	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon18:c.A2425T:p.S809C,Magi1:NM_001083321:exon18:c.A2425T:p.S809C,Magi1:NM_001286784:exon18:c.A3070T:p.S1024C,Magi1:NM_001286786:exon18:c.A3070T:p.S1024C,Magi1:NM_001286788:exon18:c.A2419T:p.S807C,Magi1:NM_001029850:exon19:c.A3073T:p.S1025C,Magi1:NM_001286785:exon19:c.A3109T:p.S1037C"	6qD1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.542732976	2	0.9999995	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	147	612	107	0.174836601	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.500331962	2	0.9995294	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	422	65	9	0.138461538	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.474891354	2	0.9999771	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	101155901	12A2p6	cell line	sgMsh2	101155901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	199	0	0	NA	exonic	Pdzrn3	nonsynonymous SNV	Pdzrn3:NM_018884:exon7:c.G1385A:p.G462E	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.538492875	2	0.9999985	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	102165349	12A2p6	cell line	sgMsh2	102165349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	269	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon22:c.T3056C:p.L1019P	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	2	0.9999949	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	102208445	12A2p6	cell line	sgMsh2	102208445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	59	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon14:c.A1814G:p.K605R	6qD3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	0.966743114	1	0.990483	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	103649552	12A2p6	cell line	sgMsh2	103649552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	193	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon5:c.A260C:p.N87T	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.513052266	2	0.9999745	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	104832538	12A2p6	cell line	sgMsh2	104832538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	237	0	0	NA	exonic	Cntn6	synonymous SNV	Cntn6:NM_017383:exon13:c.T1533C:p.V511V	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	2	0.9996782	TTA	synonymous	NA	NA	NA	NA
M5	chr6	104845848	12A2p6	cell line	sgMsh2	104845848	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	150	0	0	NA	exonic	Cntn6	stopgain	Cntn6:NM_017383:exon18:c.G2359T:p.G787X	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.457930949	2	0.9847726	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	106344780	12A2p6	cell line	sgMsh2	106344780	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	242	0	0	NA	exonic	Cntn4	nonsynonymous SNV	"Cntn4:NM_001364565:exon4:c.A97C:p.S33R,Cntn4:NM_001109751:exon5:c.A97C:p.S33R,Cntn4:NM_001364566:exon5:c.A97C:p.S33R,Cntn4:NM_001109749:exon6:c.A97C:p.S33R,Cntn4:NM_173004:exon6:c.A97C:p.S33R"	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.826819768	1	0.9743774	AAG	nonsynonymous	GTCAT	12	GTCATGTCATGT	NA
M5	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	157	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.703856828	2	0.9583515	CTT	synonymous	NA	NA	NA	NA
M5	chr6	107567368	12A2p6	cell line	sgMsh2	107567368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	242	2	0	0	exonic	Lrrn1	synonymous SNV	Lrrn1:NM_008516:exon2:c.T126C:p.P42P	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.742017741	2	0.941825	CTT	synonymous	NA	NA	NA	NA
M5	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	219	2	0	0	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.784418754	1	0.6304162	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	227	2	0	0	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.775938552	2	0.5263957	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr6	107569194	12A2p6	cell line	sgMsh2	107569194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	250	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A1952G:p.Y651C	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.999002	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	118	26	2	0.076923077	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.496091861	2	0.9983248	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	110	17	0	0	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.479131455	2	0.9940286	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M5	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	103	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.538492875	2	0.9987306	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr6	111066876	12A2p6	cell line	sgMsh2	111066876	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	184	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon3:c.T851G:p.V284G,Grm7:NM_177328:exon3:c.T851G:p.V284G"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.818339565	1	0.9340239	GTG	nonsynonymous	T	5	TTTTT	NA
M5	chr6	113138031	12A2p6	cell line	sgMsh2	113138031	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	134	192	33	0.171875	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.C2612T:p.S871F,Setd5:NM_028385:exon17:c.C2555T:p.S852F"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	0.9997041	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	246	754	101	0.133952255	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.9999988	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	100	3	0	0	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.500331962	2	0.9973947	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	362	43	9	0.209302326	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.691136524	2	0.9999774	TTA	synonymous	NA	NA	NA	NA
M5	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	236	40	4	0.1	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9988282	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	252	74	21	0.283783784	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.77169845	2	0.6508469	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	149	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.614814699	2	0.9991326	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	114701198	12A2p6	cell line	sgMsh2	114701198	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	337	90	8	0.088888889	exonic	Atg7	nonsynonymous SNV	"Atg7:NM_001379130:exon10:c.G967A:p.G323S,Atg7:NM_028835:exon10:c.G919A:p.G307S,Atg7:NM_001253717:exon11:c.G1048A:p.G350S,Atg7:NM_001253718:exon11:c.G919A:p.G307S"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.563933483	2	1.08E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	146	1	0	0	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.360408617	3	0.9807285	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	115278321	12A2p6	cell line	sgMsh2	115278321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	31	0	0	NA	exonic	Syn2	synonymous SNV	Syn2:NM_001111015:exon12:c.A1593G:p.P531P	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	1	9.91E-08	CAG	synonymous	NA	NA	NA	NA
M5	chr6	115574567	12A2p6	cell line	sgMsh2	115574567	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	196	57	5	0.087719298	exonic	Tsen2	synonymous SNV	Tsen2:NM_199033:exon9:c.G1089A:p.L363L	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	0.958262911	1	0.9999877	TGT	synonymous	NA	NA	NA	NA
M5	chr6	116224517	12A2p6	cell line	sgMsh2	116224517	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	266	93	0	0	exonic	Washc2	frameshift deletion	Washc2:NM_026585:exon12:c.1073delT:p.F359Lfs*22	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	68	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.758978146	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	240	44	7	0.159090909	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.55545328	2	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	89	12	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.818339565	NA	NA	CGT	frameshift	NA	NA	NA	-1
M5	chr6	118652031	12A2p6	cell line	sgMsh2	118652031	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	139	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon25:c.A2968C:p.I990L,Cacna1c:NM_001159533:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001159534:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001159535:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001255997:exon29:c.A3835C:p.I1279L,Cacna1c:NM_001255999:exon29:c.A3835C:p.I1279L,Cacna1c:NM_009781:exon29:c.A3835C:p.I1279L,Cacna1c:NM_001255998:exon30:c.A3910C:p.I1304L,Cacna1c:NM_001256000:exon30:c.A3820C:p.I1274L,Cacna1c:NM_001256001:exon30:c.A3829C:p.I1277L,Cacna1c:NM_001256002:exon30:c.A3820C:p.I1274L"	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.627535004	2	0.997318	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	133	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.67841622	2	0.9700585	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M5	chr6	119594810	12A2p6	cell line	sgMsh2	119594810	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	85	75	9	0.12	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon20:c.A3200C:p.E1067A	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.589374091	2	0.9825061	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	120209371	12A2p6	cell line	sgMsh2	120209371	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	115	8	2	0.25	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon16:c.G2360A:p.R787H	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.699616727	2	0.8843389	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	101	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.7907442	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	32	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.000842576	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M5	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.1748	143	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.74116972	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M5	chr6	121649887	12A2p6	cell line	sgMsh2	121649887	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	115	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon14:c.T1697G:p.I566S	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.627535004	2	0.9903245	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr6	122079631	12A2p6	cell line	sgMsh2	122079631	T	G	SNV	Mutect2;Vardict	2	0.048	246	0	0	NA	exonic	Mug2	synonymous SNV	Mug2:NM_008646:exon28:c.T3534G:p.A1178A	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.203524866	3	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M5	chr6	122320320	12A2p6	cell line	sgMsh2	122320320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	91	48	10	0.208333333	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon11:c.T2234C:p.L745S,Phc1:NM_001271579:exon12:c.T2390C:p.L797S,Phc1:NM_007905:exon12:c.T2390C:p.L797S,Phc1:NM_001355215:exon13:c.T2438C:p.L813S"	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.682656321	2	0.8542794	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	185	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.725057335	2	0.9396148	AAT	synonymous	NA	NA	NA	NA
M5	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	134	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.729297437	2	0.799331	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	123336474	12A2p6	cell line	sgMsh2	123336474	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.127	333	0	0	NA	exonic	Vmn2r19	synonymous SNV	Vmn2r19:NM_001104632:exon6:c.T2502A:p.L834L	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.538492875	2	1.74E-09	TTC	synonymous	NA	NA	NA	NA
M5	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	411	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9999975	CTG	synonymous	NA	NA	NA	NA
M5	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	451	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.631775105	2	1.25E-09	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	123786737	12A2p6	cell line	sgMsh2	123786737	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	440	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon3:c.C572T:p.P191L	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.644495409	2	3.61E-09	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	563	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.750497943	2	0.9991277	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr6	124191963	12A2p6	cell line	sgMsh2	124191963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	553	0	0	NA	exonic	Vmn2r27	nonsynonymous SNV	Vmn2r27:NM_001104642:exon6:c.A2207G:p.E736G	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.699616727	2	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	114	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.703856828	2	0.8643271	GAT	synonymous	NA	NA	NA	NA
M5	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	51	44	6	0.136363636	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.873460883	1	0.939172	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	87	96	23	0.239583333	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	1	0.9991052	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	90	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.669936017	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5	chr6	124910892	12A2p6	cell line	sgMsh2	124910892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	73	0	0	NA	exonic	Lag3	synonymous SNV	Lag3:NM_008479:exon2:c.G78A:p.G26G	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.725057335	2	0.5356483	TCC	synonymous	NA	NA	NA	NA
M5	chr6	125139695	12A2p6	cell line	sgMsh2	125139695	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	425	170	15	0.088235294	exonic	Nop2	nonsynonymous SNV	Nop2:NM_138747:exon10:c.G989A:p.G330E	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	1.00E-09	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	203	330	81	0.245454545	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.530012672	2	0.9999974	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	76	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.742017741	1	6.80E-08	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M5	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	298	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.9999983	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	130	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.661455815	2	0.9829543	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	162	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.614814699	2	0.9995903	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	126880234	12A2p6	cell line	sgMsh2	126880234	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	261	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon13:c.G1481A:p.R494K	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.767458349	2	0.7401636	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	134	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.64873551	2	0.9915127	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	126934726	12A2p6	cell line	sgMsh2	126934726	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	179	67	10	0.149253731	exonic	Rad51ap1	nonsynonymous SNV	"Rad51ap1:NM_001347455:exon3:c.C197A:p.P66H,Rad51ap1:NM_009013:exon3:c.C197A:p.P66H"	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9986991	GGG	nonsynonymous	G	5	GGGGG	NA
M5	chr6	127732773	12A2p6	cell line	sgMsh2	127732773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	104	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon2:c.G123T:p.K41N	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.580893888	2	0.9961313	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	100	1810	320	0.17679558	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.814099464	1	0.8825318	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	237	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.758978146	2	0.807951	GAC	synonymous	NA	NA	NA	NA
M5	chr6	131285713	12A2p6	cell line	sgMsh2	131285713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	131	291	36	0.12371134	exonic	Magohb	nonsynonymous SNV	"Magohb:NM_025564:exon4:c.G277A:p.V93I,Magohb:NM_001327860:exon5:c.G139A:p.V47I"	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.763218248	1	0.5185645	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr6	131678276	12A2p6	cell line	sgMsh2	131678276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	124	0	0	NA	exonic	Tas2r106	nonsynonymous SNV	Tas2r106:NM_207016:exon1:c.A611G:p.N204S	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.754738045	2	0.543834	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	131689760	12A2p6	cell line	sgMsh2	131689760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	253	0	0	NA	exonic	Tas2r114	nonsynonymous SNV	Tas2r114:NM_207019:exon1:c.A304G:p.S102G	6qF3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.58513399	2	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;MuSe;Vardict	3	0.104	121	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.440970543	2	0.9396036	CCC	synonymous	NA	NA	NA	NA
M5	chr6	132711489	12A2p6	cell line	sgMsh2	132711489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	213	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.T440C:p.F147S	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.665695916	2	0.9993593	AAA	nonsynonymous	A	5	AAAAA	NA
M5	chr6	132737416	12A2p6	cell line	sgMsh2	132737416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	220	0	0	NA	exonic	Tas2r115	nonsynonymous SNV	Tas2r115:NM_207020:exon1:c.G571A:p.G191S	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.602094395	2	0.999994	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr6	132803231	12A2p6	cell line	sgMsh2	132803231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	215	0	0	NA	exonic	Tas2r117	nonsynonymous SNV	Tas2r117:NM_207021:exon1:c.A331G:p.T111A	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.652975612	2	0.9997495	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	201	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999993	GTG	synonymous	NA	NA	NA	NA
M5	chr6	132868495	12A2p6	cell line	sgMsh2	132868495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	271	0	0	NA	exonic	Tas2r110	nonsynonymous SNV	Tas2r110:NM_199155:exon1:c.T488C:p.V163A	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.788658856	1	0.6573839	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	133054992	12A2p6	cell line	sgMsh2	133054992	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.172	167	0	0	NA	exonic	Tas2r140	stopgain	Tas2r140:NM_021562:exon1:c.801dupT:p.E268fs*0	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.729297437	NA	NA	TCA	nonsynonymous	A	5	AAAAA	1
M5	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	59	46	11	0.239130435	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.657215713	2	0.7446269	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	96	11	0.114583333	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.6621937	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	83	95	10	0.105263158	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.746257842	1	0.5437772	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	215	110	17	0.154545455	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.686896423	2	0.9975505	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	173	94	15	0.159574468	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.703856828	2	0.9737582	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	132	16	2	0.125	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.822579667	1	0.9252077	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr6	135083751	12A2p6	cell line	sgMsh2	135083751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	192	1222	177	0.144844517	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon4:c.A989G:p.H330R	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.784418754	1	0.6591789	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	138	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.746257842	2	0.6763899	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	136737382	12A2p6	cell line	sgMsh2	136737382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	221	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon12:c.A1445G:p.N482S,Gucy2c:NM_145067:exon12:c.A1445G:p.N482S"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.9847466	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	164	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.563933483	2	0.9999725	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	178	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	0.9999943	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M5	chr6	137780817	12A2p6	cell line	sgMsh2	137780817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	57	69	5	0.072463768	exonic	Dera	nonsynonymous SNV	Dera:NM_172733:exon4:c.T365C:p.V122A	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	1	0.994139	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	138416614	12A2p6	cell line	sgMsh2	138416614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	97	0	0	NA	exonic	Lmo3	nonsynonymous SNV	"Lmo3:NM_001356305:exon2:c.T7C:p.S3P,Lmo3:NM_001356306:exon2:c.T7C:p.S3P,Lmo3:NM_001356307:exon2:c.T40C:p.S14P,Lmo3:NM_207222:exon3:c.T7C:p.S3P"	6qG1	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.640255308	2	0.963552	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	165	37	0	0	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.67841622	2	0.9908844	ATT	synonymous	NA	NA	NA	NA
M5	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	148	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.559693382	2	0.9999253	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	232	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	0.9999998	AAA	synonymous	NA	NA	NA	NA
M5	chr6	141569493	12A2p6	cell line	sgMsh2	141569493	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	68	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon15:c.C2110A:p.P704T,Slco1c1:NM_021471:exon15:c.C2113A:p.P705T"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.597854294	2	0.9388589	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr6	141812709	12A2p6	cell line	sgMsh2	141812709	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	152	0	0	NA	exonic	Slco1a4	synonymous SNV	"Slco1a4:NM_001355577:exon13:c.G1575A:p.S525S,Slco1a4:NM_030687:exon14:c.G1575A:p.S525S"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.636015206	2	0.9980026	GCG	synonymous	NA	NA	NA	NA
M5	chr6	141815578	12A2p6	cell line	sgMsh2	141815578	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	205	0	0	NA	exonic	Slco1a4	synonymous SNV	"Slco1a4:NM_001355577:exon12:c.T1308A:p.L436L,Slco1a4:NM_030687:exon13:c.T1308A:p.L436L"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.563933483	2	0.9999987	CAA	synonymous	NA	NA	NA	NA
M5	chr6	141987693	12A2p6	cell line	sgMsh2	141987693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	190	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon9:c.T1365C:p.T455T	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	0.9999977	CAG	synonymous	NA	NA	NA	NA
M5	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	360	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.661455815	2	0.9999991	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	279	62	13	0.209677419	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.551213179	2	2.91E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	128	54	13	0.240740741	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	1	0.9999318	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	286	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.568173584	2	5.90E-09	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	230	33	5	0.151515152	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M5	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	68	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.70809693	2	0.59571	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr6	146550736	12A2p6	cell line	sgMsh2	146550736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	94	117	16	0.136752137	exonic	Ints13	nonsynonymous SNV	"Ints13:NM_001362107:exon16:c.A1996G:p.N666D,Ints13:NM_001362108:exon16:c.A1984G:p.N662D,Ints13:NM_138757:exon16:c.A1984G:p.N662D,Ints13:NM_001362106:exon17:c.A2008G:p.N670D"	6qG3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.839540072	1	0.9391887	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	146592735	12A2p6	cell line	sgMsh2	146592735	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	300	71	5	0.070422535	exonic	Fgfr1op2	nonsynonymous SNV	Fgfr1op2:NM_026218:exon5:c.G498T:p.E166D	6qG3	chr6-70722260-148425959	6	4	2	0.99	4.197700362	NA	1	0.716577132	2	0.9979998	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	248	10	2	0.2	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M5	chr6	148933108	12A2p6	cell line	sgMsh2	148933108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	142	25	2	0.08	exonic	Sinhcaf	nonsynonymous SNV	"Sinhcaf:NM_001355645:exon2:c.A22G:p.K8E,Sinhcaf:NM_019643:exon2:c.A22G:p.K8E"	6qG3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	232	99	22	0.222222222	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	130	161	39	0.242236025	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	CGA	nonsynonymous	NA	NA	NA	NA
M5	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	85	39	11	0.282051282	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9975463	CAG	synonymous	NA	NA	NA	NA
M5	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	61	1	1	1	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-3716454	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9942607	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	371	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	1.02E-09	CCT	synonymous	NA	NA	NA	NA
M5	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	208	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	121	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9995624	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	21	4	1	0.25	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	2	1	1	0.9464499	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	50	42	11	0.261904762	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	CGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	243	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	5.07E-08	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	159	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999903	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	395	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M5	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	9	19	8	0.421052632	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	2	1	1	0.8923421	AGG	synonymous	NA	NA	NA	NA
M5	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	270	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	1.01E-08	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	140	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999679	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	199	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	CCC	synonymous	NA	NA	NA	NA
M5	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	146	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9984871	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	6996630	12A2p6	cell line	sgMsh2	6996630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	135	0	0	NA	exonic	Aurkc	nonsynonymous SNV	"Aurkc:NM_001080965:exon3:c.G252T:p.K84N,Aurkc:NM_001080966:exon3:c.G135T:p.K45N,Aurkc:NM_020572:exon3:c.G135T:p.K45N"	7qA1	chr7-3896664-7472715	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999561	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	10446891	12A2p6	cell line	sgMsh2	10446891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	97	0	0	NA	exonic	Vmn1r67	synonymous SNV	Vmn1r67:NM_134229:exon1:c.T81C:p.L27L	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	1	0.9995224	TTA	synonymous	NA	NA	NA	NA
M5	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	93	3	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	1	0.999386	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr7	10715340	12A2p6	cell line	sgMsh2	10715340	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	82	0	0	NA	exonic	Nlrp4b	frameshift deletion	"Nlrp4b:NM_001355151:exon4:c.1469delT:p.L492Wfs*28,Nlrp4b:NM_172481:exon4:c.1469delT:p.L492Wfs*28"	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	103	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-7473826-12260948	3	2	1	0.99	4.197700362	NA	1	1	1	0.9996723	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M5	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	99	647	161	0.248840804	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9995787	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	76	1	0	0	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9532356	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	14664508	12A2p6	cell line	sgMsh2	14664508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	165	0	0	NA	exonic	Obox7	nonsynonymous SNV	Obox7:NM_001038676:exon3:c.T346C:p.C116R	7qA1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9832028	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	27	365	85	0.232876712	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.8808554	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	16434943	12A2p6	cell line	sgMsh2	16434943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	56	48	7	0.145833333	exonic	Zc3h4	synonymous SNV	Zc3h4:NM_198631:exon14:c.A3201G:p.P1067P	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9937614	CAC	synonymous	NA	NA	NA	NA
M5	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	148	81	24	0.296296296	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.640255308	2	0.9970207	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	57	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.994139	TGA	synonymous	NA	NA	NA	NA
M5	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	268	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.797139059	1	0.7978497	ACA	synonymous	NA	NA	NA	NA
M5	chr7	18066078	12A2p6	cell line	sgMsh2	18066078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	51	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon1:c.A18T:p.A6A,Ceacam12:NM_001162524:exon1:c.A18T:p.A6A,Ceacam12:NM_026087:exon1:c.A18T:p.A6A"	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.70809693	1	0.5243591	CAC	synonymous	NA	NA	NA	NA
M5	chr7	18067240	12A2p6	cell line	sgMsh2	18067240	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	177	0	0	NA	exonic	Ceacam12	nonsynonymous SNV	"Ceacam12:NM_001162523:exon2:c.G143A:p.G48E,Ceacam12:NM_001162524:exon2:c.G143A:p.G48E,Ceacam12:NM_026087:exon2:c.G143A:p.G48E"	7qA2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999969	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	19097699	12A2p6	cell line	sgMsh2	19097699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	28	37	6	0.162162162	exonic	Six5	nonsynonymous SNV	Six5:NM_011383:exon3:c.T2114C:p.L705P	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9648342	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	98	90	21	0.233333333	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	19278332	12A2p6	cell line	sgMsh2	19278332	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	31	0	0	NA	exonic	Ppm1n	nonsynonymous SNV	Ppm1n:NM_177691:exon2:c.C974A:p.P325H	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	9.91E-08	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	27	3	3	1	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9558718	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	138	214	65	0.303738318	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	19701789	12A2p6	cell line	sgMsh2	19701789	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.146	36	303	90	0.297029703	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.C1015A:p.L339M,Tomm40:NM_016871:exon10:c.C1015A:p.L339M"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.619054801	2	0.6165587	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.189	157	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8396807	CAG	synonymous	NA	NA	NA	NA
M5	chr7	23984622	12A2p6	cell line	sgMsh2	23984622	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	326	0	0	NA	exonic	Vmn1r181	nonsynonymous SNV	Vmn1r181:NM_207546:exon1:c.A511C:p.S171R	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	1.27E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	24515483	12A2p6	cell line	sgMsh2	24515483	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	50	26	9	0.346153846	exonic	Zfp428	nonsynonymous SNV	"Zfp428:NM_001290461:exon3:c.G523T:p.G175W,Zfp428:NM_146183:exon3:c.G484T:p.G162W,Zfp428:NM_175142:exon3:c.G523T:p.G175W"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9909316	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	25093600	12A2p6	cell line	sgMsh2	25093600	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	35	0	0	NA	exonic	Pou2f2	frameshift deletion	"Pou2f2:NM_001163554:exon13:c.1237delC:p.L413Sfs*33,Pou2f2:NM_001163555:exon13:c.1303delC:p.L435Sfs*33,Pou2f2:NM_001163556:exon13:c.1237delC:p.L413Sfs*33,Pou2f2:NM_011138:exon13:c.1285delC:p.L429Sfs*33"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.848020275	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M5	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	102	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.568173584	2	0.9970141	CGC	synonymous	C	5	CCCCC	NA
M5	chr7	25203553	12A2p6	cell line	sgMsh2	25203553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	26	39	10	0.256410256	exonic	Dedd2	nonsynonymous SNV	Dedd2:NM_207677:exon5:c.C980T:p.T327I	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9603133	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	52	28	7	0.25	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9598512	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	64	15	3	0.2	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9962163	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	25346220	12A2p6	cell line	sgMsh2	25346220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	21	5	0.238095238	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon24:c.T4265C:p.V1422A	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9438749	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	41	100	25	0.25	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9841483	AGG	synonymous	NA	NA	NA	NA
M5	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	40	51	10	0.196078431	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.983138	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M5	chr7	26384922	12A2p6	cell line	sgMsh2	26384922	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	355	0	0	NA	exonic	Nlrp9c	nonsynonymous SNV	Nlrp9c:NM_001042612:exon3:c.C1231A:p.L411I	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	1.04E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	270	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9965676	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	26558562	12A2p6	cell line	sgMsh2	26558562	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	230	0	0	NA	exonic	Nlrp9a	nonsynonymous SNV	"Nlrp9a:NM_001302792:exon2:c.T1337C:p.V446A,Nlrp9a:NM_001048219:exon3:c.T1604C:p.V535A,Nlrp9a:NM_001048220:exon3:c.T1604C:p.V535A"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GTG	nonsynonymous	TGG	8	TGGTGGTG	NA
M5	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	191	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999987	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	71	7	2	0.285714286	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M5	chr7	27581432	12A2p6	cell line	sgMsh2	27581432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	33	10	1	0.1	exonic	2310022A10Rik	nonsynonymous SNV	"2310022A10Rik:NM_001122767:exon9:c.C1100T:p.T367I,2310022A10Rik:NM_001374792:exon11:c.C1178T:p.T393I"	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	25	10	2	0.2	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9578486	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	109	149	36	0.241610738	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997752	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	28395855	12A2p6	cell line	sgMsh2	28395855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	180	96	20	0.208333333	exonic	Paf1	synonymous SNV	Paf1:NM_019458:exon6:c.T444C:p.N148N	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999974	ATG	synonymous	NA	NA	NA	NA
M5	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	47	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9890716	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	23	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9524732	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	97	655	161	0.245801527	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	0.6125607	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	164	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999685	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	32	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9724323	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M5	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	25	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9578486	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	23	0	0	NA	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9524732	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	30360056	12A2p6	cell line	sgMsh2	30360056	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	47	4	0	0	exonic	Lrfn3	frameshift deletion	Lrfn3:NM_175478:exon2:c.743delG:p.G248Efs*50	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	CTG	synonymous	NA	NA	NA	NA
M5	chr7	30574236	12A2p6	cell line	sgMsh2	30574236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	40	20	2	0.1	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon29:c.T6982C:p.F2328L,Kmt2b:NM_029274:exon29:c.T6955C:p.F2319L"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.983138	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	74	630	93	0.147619048	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.713841	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	275	51	2	0.039215686	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	258	63	2	0.031746032	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.83105987	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	81	68	21	0.308823529	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	CAT	synonymous	NA	NA	NA	NA
M5	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	73	39	5	0.128205128	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	GCT	synonymous	NA	NA	NA	NA
M5	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	33	34	8	0.235294118	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.70809693	1	0.6481302	ATA	synonymous	NA	NA	NA	NA
M5	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	134	8	0	0	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.999616	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M5	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	133	70	9	0.128571429	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	90	34	8	0.235294118	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	378	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9999956	TAC	synonymous	NA	NA	NA	NA
M5	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	68	19	6	0.315789474	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	106	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9997286	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	43953899	12A2p6	cell line	sgMsh2	43953899	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	155	0	0	NA	exonic	Klk1b8	synonymous SNV	Klk1b8:NM_008457:exon3:c.C255A:p.P85P	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9986292	CCT	synonymous	NA	NA	NA	NA
M5	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	62	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.995712	CAG	synonymous	NA	NA	NA	NA
M5	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	85	31	0.364705882	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9977075	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	51	47	19	0.404255319	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	129	91	16	0.175824176	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.999936	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	44981747	12A2p6	cell line	sgMsh2	44981747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	102	635	136	0.214173228	exonic	Prmt1	nonsynonymous SNV	"Prmt1:NM_001252476:exon3:c.G285T:p.K95N,Prmt1:NM_001252477:exon3:c.G285T:p.K95N,Prmt1:NM_019830:exon4:c.G339T:p.K113N"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9885955	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	31	26	8	0.307692308	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	9.91E-08	AAG	synonymous	NA	NA	NA	NA
M5	chr7	45122859	12A2p6	cell line	sgMsh2	45122859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	107	2967	104	0.035052241	exonic	Rps11	nonsynonymous SNV	Rps11:NM_013725:exon4:c.A323G:p.N108S	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.449450746	2	0.9632128	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	1	0	0	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9929322	CAT	synonymous	NA	NA	NA	NA
M5	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	160	3	0	0	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.627535004	2	0.999131	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	142	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999717	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	43	19	4	0.210526316	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9679273	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	111	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9996986	CCT	synonymous	CTG	8	CTGCTGCT	NA
M5	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	110	121	28	0.231404959	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997889	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.309	59	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9948274	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.309	59	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9948274	ATA	synonymous	NA	NA	NA	NA
M5	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	29	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9669045	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	102	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8347725	GTG	synonymous	GT	8	GTGTGTGT	NA
M5	chr7	50599854	12A2p6	cell line	sgMsh2	50599854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	221	0	0	NA	exonic	4933405O20Rik	nonsynonymous SNV	4933405O20Rik:NM_172901:exon1:c.A635G:p.K212R	7qB4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr7	55874909	12A2p6	cell line	sgMsh2	55874909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	100	246	58	0.235772358	exonic	Cyfip1	synonymous SNV	"Cyfip1:NM_001164662:exon6:c.A390G:p.R130R,Cyfip1:NM_011370:exon6:c.A390G:p.R130R,Cyfip1:NM_001164661:exon7:c.A390G:p.R130R"	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996044	GAA	synonymous	NA	NA	NA	NA
M5	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	168	100	20	0.2	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9999504	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	56197112	12A2p6	cell line	sgMsh2	56197112	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	60	31	9	0.290322581	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon70:c.C10809A:p.D3603E,Herc2:NM_010418:exon70:c.C10809A:p.D3603E"	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9951408	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	82	77	4	0.051948052	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	AAG	synonymous	NA	NA	NA	NA
M5	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	151	169	37	0.218934911	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	82	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.7634128	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	62349187	12A2p6	cell line	sgMsh2	62349187	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	93	0	0	NA	exonic	Ndn	synonymous SNV	Ndn:NM_010882:exon1:c.C780A:p.P260P	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.965832	CCG	synonymous	NA	NA	NA	NA
M5	chr7	62419521	12A2p6	cell line	sgMsh2	62419521	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	45	0	0	NA	exonic	Mkrn3	nonsynonymous SNV	Mkrn3:NM_011746:exon1:c.G521T:p.R174M	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.8027156	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	62419569	12A2p6	cell line	sgMsh2	62419569	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	43	3	0	0	exonic	Mkrn3	nonsynonymous SNV	Mkrn3:NM_011746:exon1:c.C473T:p.P158L	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9859936	AGG	nonsynonymous	G	5	GGGGG	NA
M5	chr7	62419940	12A2p6	cell line	sgMsh2	62419940	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	25	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.102delT:p.F34Lfs*25	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Vardict	2	0.199	25	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.843780174	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5	chr7	62463809	12A2p6	cell line	sgMsh2	62463809	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	25	0	0	NA	exonic	Peg12	nonsynonymous SNV	Peg12:NM_013788:exon1:c.G539T:p.G180V	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9578486	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr7	64775706	12A2p6	cell line	sgMsh2	64775706	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	33	0	0	NA	exonic	Fam189a1	frameshift deletion	Fam189a1:NM_183087:exon7:c.925delC:p.Q309Rfs*52	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TGG	frameshift	CTGG	9	CTGGCTGGC	-1
M5	chr7	66060654	12A2p6	cell line	sgMsh2	66060654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	58	214	39	0.182242991	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon1:c.A44G:p.Y15C	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.691136524	2	0.6011052	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	299	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.763218248	2	0.8608198	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	67726092	12A2p6	cell line	sgMsh2	67726092	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.323	39	41	0	0	exonic	Ttc23	frameshift insertion	"Ttc23:NM_001168476:exon10:c.785dupC:p.Q264Pfs*33,Ttc23:NM_001168475:exon11:c.1292dupC:p.Q433Pfs*33,Ttc23:NM_001360653:exon12:c.1292dupC:p.Q433Pfs*33,Ttc23:NM_025905:exon12:c.1418dupC:p.Q475Pfs*33"	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
M5	chr7	67735847	12A2p6	cell line	sgMsh2	67735847	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	217	4	2	0.5	exonic	Synm	nonsynonymous SNV	"Synm:NM_201639:exon4:c.T2066G:p.V689G,Synm:NM_207663:exon4:c.T2066G:p.V689G"	7qC	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.695376626	2	0.9959454	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	72259103	12A2p6	cell line	sgMsh2	72259103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	31	0	0	NA	exonic	Mctp2	nonsynonymous SNV	Mctp2:NM_001024703:exon2:c.A461G:p.H154R	7qD1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9567028	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	73507892	12A2p6	cell line	sgMsh2	73507892	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	77	58	13	0.224137931	exonic	Chd2	synonymous SNV	Chd2:NM_001081345:exon6:c.C465A:p.P155P	7qD1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9791923	AGG	synonymous	NA	NA	NA	NA
M5	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	130	66	13	0.196969697	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	CAG	synonymous	AGA	8	AGAAGAAG	NA
M5	chr7	79710296	12A2p6	cell line	sgMsh2	79710296	A	G	SNV	Mutect2;MuSe;Vardict	3	0.399	9	0	0	NA	exonic	Kif7	nonsynonymous SNV	"Kif7:NM_010626:exon4:c.T1192C:p.S398P,Kif7:NM_001291222:exon5:c.T1192C:p.S398P"	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.8923421	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	130	3	0	0	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	79811156	12A2p6	cell line	sgMsh2	79811156	C	A	SNV	Mutect2;MuSe;Vardict	3	0.461	13	0	0	NA	exonic	Mesp2	synonymous SNV	Mesp2:NM_008589:exon1:c.C228A:p.P76P	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9144061	CCG	synonymous	NA	NA	NA	NA
M5	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	23	44	12	0.272727273	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9524732	GCC	synonymous	NA	NA	NA	NA
M5	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	51	49	14	0.285714286	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	112	670	155	0.231343284	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998138	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	33	22	5	0.227272727	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9296832	CAT	synonymous	NA	NA	NA	NA
M5	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	65	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9679215	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	151	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999367	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	49	4	1	0.25	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9903493	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	138	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	GAG	synonymous	NA	NA	NA	NA
M5	chr7	81596135	12A2p6	cell line	sgMsh2	81596137	GAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	59	33	9	0.272727273	exonic	Whamm	nonframeshift deletion	Whamm:NM_001004185:exon10:c.2338_2340del:p.E781del	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.9243421	NA	NA	AGA	inframe	GAG	8	GAGGAGGA	-3
M5	chr7	81614471	12A2p6	cell line	sgMsh2	81614471	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	37	19	0	0	exonic	Homer2	stopgain	"Homer2:NM_001164086:exon6:c.G523T:p.E175X,Homer2:NM_001164087:exon6:c.G364T:p.E122X,Homer2:NM_011983:exon6:c.G556T:p.E186X"	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9797122	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr7	81968991	12A2p6	cell line	sgMsh2	81968991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	57	0	0	NA	exonic	Bnc1	synonymous SNV	Bnc1:NM_007562:exon5:c.G2325A:p.L775L	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.733537538	1	0.5939059	TCA	synonymous	TTCA	8	TTCATTCA	NA
M5	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.311	70	27	4	0.148148148	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	GCA	synonymous	NA	NA	NA	NA
M5	chr7	84916076	12A2p6	cell line	sgMsh2	84916076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	503	0	0	NA	exonic	Olfr290	nonsynonymous SNV	Olfr290:NM_146416:exon1:c.T296C:p.L99S	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	1.01E-09	TTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	85005753	12A2p6	cell line	sgMsh2	85005753	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	108	0	0	NA	exonic	Vmn2r66	synonymous SNV	Vmn2r66:NM_001033878:exon4:c.C1347T:p.N449N	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9658933	GGT	synonymous	NA	NA	NA	NA
M5	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	205	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.77169845	2	0.5540281	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	85619258	12A2p6	cell line	sgMsh2	85619258	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	262	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon3:c.C656A:p.S219Y	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	1.61E-08	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	125	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	86269100	12A2p6	cell line	sgMsh2	86269100	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	233	0	0	NA	exonic	Olfr310	stopgain	Olfr310:NM_001011520:exon1:c.G688T:p.G230X	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CCT	nonsynonymous	CT	9	CTCTCTCTC	NA
M5	chr7	86363538	12A2p6	cell line	sgMsh2	86363538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	278	0	0	NA	exonic	Olfr305	synonymous SNV	Olfr305:NM_146616:exon1:c.A798G:p.S266S	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9999997	GTG	synonymous	NA	NA	NA	NA
M5	chr7	86413077	12A2p6	cell line	sgMsh2	86413077	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	214	0	0	NA	exonic	Olfr301	synonymous SNV	Olfr301:NM_212436:exon3:c.C714A:p.T238T	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.999995	CCT	synonymous	NA	NA	NA	NA
M5	chr7	86466004	12A2p6	cell line	sgMsh2	86466004	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	258	0	0	NA	exonic	Olfr299	nonsynonymous SNV	Olfr299:NM_001011767:exon1:c.C592A:p.L198I	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	2.04E-08	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	257	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.767458349	2	0.7324276	CTG	synonymous	NA	NA	NA	NA
M5	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.375	146	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M5	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	231	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr7	86811375	12A2p6	cell line	sgMsh2	86811375	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	294	0	0	NA	exonic	Vmn2r77	synonymous SNV	Vmn2r77:NM_001105188:exon6:c.C1908A:p.S636S	7qD3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9999996	CCT	synonymous	NA	NA	NA	NA
M5	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	96	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994914	TAA	synonymous	A	5	AAAAA	NA
M5	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	100	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9994231	ATT	nonsynonymous	A	5	AAAAA	NA
M5	chr7	96823811	12A2p6	cell line	sgMsh2	96823811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon18:c.A2813G:p.D938G,Tenm4:NM_011858:exon18:c.A2702G:p.D901G,Tenm4:NM_001310762:exon19:c.A2810G:p.D937G"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9881807	GAC	nonsynonymous	C	5	CCCCC	NA
M5	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	158	9	0	0	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999896	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	60	24	21	0.875	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8309438	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	102	31	27	0.870967742	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	98097619	12A2p6	cell line	sgMsh2	98097619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	70	35	1	0.028571429	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon5:c.C553A:p.L185M,Myo7a:NM_001256081:exon6:c.C586A:p.L196M,Myo7a:NM_001256082:exon6:c.C571A:p.L191M,Myo7a:NM_008663:exon6:c.C586A:p.L196M"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9974014	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	49	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9903493	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	83	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9985914	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	87	57	10	0.175438596	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9573382	CAG	synonymous	CAG	8	CAGCAGCA	NA
M5	chr7	100499325	12A2p6	cell line	sgMsh2	100499325	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	114	1318	61	0.046282246	exonic	Ucp2	nonsynonymous SNV	Ucp2:NM_011671:exon8:c.A905G:p.Y302C	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9986682	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	57	5	2	0.4	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.487611658	2	0.96903	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	101384922	12A2p6	cell line	sgMsh2	101384922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	33	16	6	0.375	exonic	Arap1	synonymous SNV	Arap1:NM_001040111:exon4:c.T570C:p.P190P	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9622652	CTG	synonymous	NA	NA	NA	NA
M5	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	97	135	34	0.251851852	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.83105987	1	0.9253662	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr7	102421529	12A2p6	cell line	sgMsh2	102421529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	33	17	1	0.058823529	exonic	Stim1	nonsynonymous SNV	"Stim1:NM_001374058:exon7:c.A968G:p.Q323R,Stim1:NM_001374060:exon7:c.A968G:p.Q323R,Stim1:NM_009287:exon7:c.A968G:p.Q323R"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	134	303	86	0.283828383	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.962354	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	105	382	94	0.246073298	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.999711	GTT	synonymous	NA	NA	NA	NA
M5	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	125	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	152	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999849	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr7	102887211	12A2p6	cell line	sgMsh2	102887211	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	88	0	0	NA	exonic	Olfr569	frameshift deletion	Olfr569:NM_147088:exon1:c.941delC:p.P314Lfs*1	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.928582201	NA	NA	AGG	frameshift	NA	NA	NA	-1
M5	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	172	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9999359	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr7	103041581	12A2p6	cell line	sgMsh2	103041581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	213	0	0	NA	exonic	Olfr582	nonsynonymous SNV	Olfr582:NM_147053:exon1:c.T101G:p.V34G	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9991444	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	103212324	12A2p6	cell line	sgMsh2	103212324	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	320	0	0	NA	exonic	Olfr593	nonsynonymous SNV	Olfr593:NM_146380:exon1:c.G463A:p.G155R	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	1.86E-09	TGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	377	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	5.11E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	135	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9737131	GTA	synonymous	NA	NA	NA	NA
M5	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	124	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999124	ATG	synonymous	NA	NA	NA	NA
M5	chr7	103506578	12A2p6	cell line	sgMsh2	103506578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	136	0	0	NA	exonic	Olfr610	nonsynonymous SNV	Olfr610:NM_147081:exon1:c.G367A:p.D123N	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999588	TCA	nonsynonymous	NA	NA	NA	NA
M5	chr7	104003305	12A2p6	cell line	sgMsh2	104003305	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	313	0	0	NA	exonic	Olfr638	nonsynonymous SNV	Olfr638:NM_147120:exon1:c.G47A:p.G16D	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	1.61E-09	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	104084516	12A2p6	cell line	sgMsh2	104084516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	143	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.T563A:p.I188N	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999027	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	359	10	1	0.1	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	130	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.979783	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	104617935	12A2p6	cell line	sgMsh2	104617935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	178	0	0	NA	exonic	Olfr656	synonymous SNV	Olfr656:NM_147075:exon1:c.T279C:p.A93A	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999971	CTA	synonymous	NA	NA	NA	NA
M5	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	248	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9999072	TCC	synonymous	NA	NA	NA	NA
M5	chr7	104840580	12A2p6	cell line	sgMsh2	104840580	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	326	0	0	NA	exonic	Usp17lb	frameshift deletion	"Usp17lb:NM_001358922:exon2:c.1136delA:p.K379Sfs*27,Usp17lb:NM_201409:exon2:c.1139delA:p.K380Sfs*27"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	377	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	1.01E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	105384980	12A2p6	cell line	sgMsh2	105384980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	49	29	5	0.172413793	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon8:c.T1443G:p.P481P,Fam160a2:NM_001242365:exon8:c.T1443G:p.P481P"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9903493	TAG	synonymous	NA	NA	NA	NA
M5	chr7	105389552	12A2p6	cell line	sgMsh2	105389552	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	82	31	7	0.225806452	exonic	Fam160a2	nonsynonymous SNV	"Fam160a2:NM_001242364:exon3:c.A479C:p.D160A,Fam160a2:NM_001242365:exon3:c.A479C:p.D160A,Fam160a2:NM_199009:exon3:c.A479C:p.D160A,Fam160a2:NM_001242363:exon4:c.A479C:p.D160A"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.67841622	2	8.46E-07	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	77	45	13	0.288888889	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.614814699	2	0.9474417	GAT	synonymous	NA	NA	NA	NA
M5	chr7	105434067	12A2p6	cell line	sgMsh2	105434067	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	34	0	0	NA	exonic	Cckbr	nonsynonymous SNV	Cckbr:NM_007627:exon3:c.C476T:p.P159L	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9756076	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	83	47	3	0.063829787	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	213	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999997	CCT	synonymous	NA	NA	NA	NA
M5	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	174	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999962	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	107074643	12A2p6	cell line	sgMsh2	107074643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	185	0	0	NA	exonic	Olfr714	nonsynonymous SNV	Olfr714:NM_147033:exon1:c.A814G:p.K272E	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.839540072	1	0.9798392	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	232	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	107822833	12A2p6	cell line	sgMsh2	107822833	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	390	0	0	NA	exonic	Olfr469	nonsynonymous SNV	Olfr469:NM_146426:exon1:c.T635G:p.V212G	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	1.47E-09	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	2.17E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M5	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	252	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	2.92E-08	AAA	synonymous	AATG	8	AATGAATG	NA
M5	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	184	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.999998	ATG	nonsynonymous	G	5	GGGGG	NA
M5	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	162	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999919	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	229	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9999502	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	108212306	12A2p6	cell line	sgMsh2	108212306	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	240	0	0	NA	exonic	Olfr487	nonsynonymous SNV	Olfr487:NM_001011811:exon1:c.G222T:p.M74I	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	CCA	nonsynonymous	NA	NA	NA	NA
M5	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	335	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9999984	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.292	304	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	2.08E-09	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	108845947	12A2p6	cell line	sgMsh2	108845947	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	186	0	0	NA	exonic	Olfr516	nonsynonymous SNV	Olfr516:NM_146725:exon1:c.C62A:p.P21H	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999982	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	109525720	12A2p6	cell line	sgMsh2	109525720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	92	14	1	0.071428571	exonic	Denn2b	synonymous SNV	"Denn2b:NM_029811:exon17:c.T1851G:p.T617T,Denn2b:NM_001001326:exon18:c.T3102G:p.T1034T"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CAG	synonymous	NA	NA	NA	NA
M5	chr7	110887956	12A2p6	cell line	sgMsh2	110887956	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	74	1	0	0	exonic	Mrvi1	synonymous SNV	"Mrvi1:NM_010826:exon16:c.T2184C:p.P728P,Mrvi1:NM_194464:exon17:c.T1989C:p.P663P"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.305287299	3	0.9485959	AAG	synonymous	NA	NA	NA	NA
M5	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	71	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9973579	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	111055527	12A2p6	cell line	sgMsh2	111055527	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	41	80	20	0.25	exonic	Ctr9	synonymous SNV	Ctr9:NM_009431:exon25:c.G3264A:p.P1088P	7qE3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.805619261	1	0.8367555	CGT	synonymous	NA	NA	NA	NA
M5	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	99	4	1	0.25	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9992043	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	243	718	186	0.259052925	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.898901492	1	0.9998915	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	174	244	60	0.245901639	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9997061	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	114415719	12A2p6	cell line	sgMsh2	114415719	T	A	SNV	Mutect2;MuSe	2	0.3	9	0	0	NA	exonic	Pde3b	nonsynonymous SNV	Pde3b:NM_011055:exon1:c.T169A:p.F57I	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.8923421	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	116526080	12A2p6	cell line	sgMsh2	116526080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	164	58	10	0.172413793	exonic	Nucb2	synonymous SNV	"Nucb2:NM_001130479:exon5:c.C372A:p.A124A,Nucb2:NM_001360375:exon6:c.C372A:p.A124A"	7qF1	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999929	CCC	synonymous	NA	NA	NA	NA
M5	chr7	119489394	12A2p6	cell line	sgMsh2	119489394	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	137	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.G1383A:p.R461R	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999613	GCC	synonymous	NA	NA	NA	NA
M5	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	154	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999867	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	173	44	8	0.181818182	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9993925	AAC	synonymous	NA	NA	NA	NA
M5	chr7	121737955	12A2p6	cell line	sgMsh2	121737955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	65	0	0	NA	exonic	Scnn1g	nonsynonymous SNV	Scnn1g:NM_011326:exon2:c.A38G:p.K13R	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.877700985	1	0.9588377	AAG	nonsynonymous	A	5	AAAAA	NA
M5	chr7	122107529	12A2p6	cell line	sgMsh2	122107529	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	67	35	12	0.342857143	exonic	Palb2	stopgain	"Palb2:NM_001289845:exon10:c.C1144T:p.R382X,Palb2:NM_001081238:exon13:c.C3304T:p.R1102X,Palb2:NM_001289844:exon13:c.C2215T:p.R739X"	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.9095529	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	122159773	12A2p6	cell line	sgMsh2	122159773	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	91	146	33	0.226027397	exonic	Plk1	nonsynonymous SNV	Plk1:NM_011121:exon1:c.G231T:p.E77D	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993039	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	23	99	19	0.191919192	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9524732	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	124397168	12A2p6	cell line	sgMsh2	124397168	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	108	0	0	NA	exonic	Hs3st4	synonymous SNV	Hs3st4:NM_001252072:exon2:c.A1056T:p.R352R	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	GAC	synonymous	NA	NA	NA	NA
M5	chr7	125663440	12A2p6	cell line	sgMsh2	125663440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	123	21	0.170731707	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon20:c.A3246G:p.L1082L	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9944857	CTA	synonymous	NA	NA	NA	NA
M5	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	103	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996723	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr7	126413811	12A2p6	cell line	sgMsh2	126413811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	89	0	0	NA	exonic	Cd19	nonsynonymous SNV	"Cd19:NM_001357091:exon3:c.A530G:p.N177S,Cd19:NM_009844:exon3:c.A530G:p.N177S"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr7	126496639	12A2p6	cell line	sgMsh2	126496639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	34	45	10	0.222222222	exonic	Atxn2l	synonymous SNV	"Atxn2l:NM_001347658:exon11:c.T1065C:p.P355P,Atxn2l:NM_183020:exon11:c.T1323C:p.P441P"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9756076	AAG	synonymous	NA	NA	NA	NA
M5	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	82	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	127586366	12A2p6	cell line	sgMsh2	127586366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	47	8	1	0.125	exonic	Ccdc189	synonymous SNV	"Ccdc189:NM_001033040:exon4:c.C390T:p.H130H,Ccdc189:NM_001382406:exon4:c.C390T:p.H130H,Ccdc189:NM_001382407:exon4:c.C390T:p.H130H"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9890716	CGT	synonymous	NA	NA	NA	NA
M5	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	94	11	3	0.272727273	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994234	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	43	3	0	0	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.758978146	1	0.7331299	GTT	synonymous	NA	NA	NA	NA
M5	chr7	127879282	12A2p6	cell line	sgMsh2	127879282	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	85	31	8	0.258064516	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A630G:p.V210V	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9558514	TAG	synonymous	NA	NA	NA	NA
M5	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	202	210	45	0.214285714	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999993	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	89	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.534252773	2	0.9964982	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	129	171	29	0.169590643	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	0.8936439	CAC	synonymous	NA	NA	NA	NA
M5	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	98	114	18	0.157894737	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.949782708	1	0.9979107	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	182	3	0	0	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999977	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr7	133722249	12A2p6	cell line	sgMsh2	133722249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	97	282	68	0.241134752	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon10:c.T1567C:p.Y523H,Dhx32:NM_001286030:exon11:c.T1987C:p.Y663H,Dhx32:NM_001286031:exon11:c.T1987C:p.Y663H,Dhx32:NM_001357685:exon11:c.T1942C:p.Y648H,Dhx32:NM_133941:exon11:c.T1987C:p.Y663H"	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	TAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	134765304	12A2p6	cell line	sgMsh2	134765304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	101	81	17	0.209876543	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon15:c.T1474C:p.F492L	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9990708	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	88	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M5	chr7	137453497	12A2p6	cell line	sgMsh2	137453497	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	107	305	0	0	exonic	Glrx3	frameshift deletion	Glrx3:NM_023140:exon4:c.367delT:p.P124Lfs*15	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	60	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9866054	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	138876716	12A2p6	cell line	sgMsh2	138876716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	114	14	0.122807018	exonic	Ppp2r2d	nonsynonymous SNV	"Ppp2r2d:NM_026391:exon8:c.A1081G:p.S361G,Ppp2r2d:NM_001347618:exon9:c.A586G:p.S196G"	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.997053	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	140031057	12A2p6	cell line	sgMsh2	140031057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	78	54	14	0.259259259	exonic	Tubgcp2	nonsynonymous SNV	"Tubgcp2:NM_001286007:exon4:c.T410C:p.L137P,Tubgcp2:NM_001286009:exon4:c.T410C:p.L137P,Tubgcp2:NM_133755:exon4:c.T410C:p.L137P"	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	140101391	12A2p6	cell line	sgMsh2	140101391	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	59	16	0	0	exonic	Fuom	nonsynonymous SNV	"Fuom:NM_001286217:exon3:c.C166A:p.P56T,Fuom:NM_026928:exon3:c.C166A:p.P56T"	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9207733	GGG	nonsynonymous	NA	NA	NA	NA
M5	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	180	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9998547	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.225	80	2	0	0	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.95402281	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M5	chr7	141274035	12A2p6	cell line	sgMsh2	141274035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	219	0	0	NA	exonic	Cdhr5	nonsynonymous SNV	"Cdhr5:NM_001114322:exon6:c.T539C:p.L180P,Cdhr5:NM_028069:exon6:c.T539C:p.L180P"	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9999464	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	141327384	12A2p6	cell line	sgMsh2	141327384	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	10	26	4	0.153846154	exonic	Deaf1	nonsynonymous SNV	Deaf1:NM_016874:exon1:c.G187A:p.V63I	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.8983161	ACC	nonsynonymous	NA	NA	NA	NA
M5	chr7	141431835	12A2p6	cell line	sgMsh2	141431835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	44	15	3	0.2	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon7:c.C491T:p.A164V,Slc25a22:NM_001360723:exon7:c.C491T:p.A164V,Slc25a22:NM_001360724:exon7:c.C251T:p.A84V,Slc25a22:NM_026646:exon7:c.C491T:p.A164V"	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	2	1	1	0.9868351	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	111	11	5	0.454545455	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9841683	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	130	13	1	0.076923077	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	GTT	synonymous	NA	NA	NA	NA
M5	chr7	141810047	12A2p6	cell line	sgMsh2	141810047	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.203	47	5	2	0.4	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon31:c.A7091T:p.N2364I	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9210707	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	141872548	12A2p6	cell line	sgMsh2	141872548	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	57	42	4	0.095238095	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon49:c.G14381T:p.G4794V	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9793574	GGG	nonsynonymous	CCTG	8	CCTGCCTG	NA
M5	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	56	6	2	0.333333333	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9904015	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	70	2	0	0	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9974014	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr7	144520751	12A2p6	cell line	sgMsh2	144520751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	73	99	21	0.212121212	exonic	Ppfia1	synonymous SNV	"Ppfia1:NM_001033319:exon4:c.T405C:p.H135H,Ppfia1:NM_001195086:exon4:c.T405C:p.H135H"	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	CAT	synonymous	NA	NA	NA	NA
M5	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	128	172	45	0.261627907	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999318	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	139	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9998255	GTA	synonymous	NA	NA	NA	NA
M5	chr7	144919377	12A2p6	cell line	sgMsh2	144919377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	71	1	1	1	exonic	LTO1	synonymous SNV	LTO1:NM_001357869:exon4:c.T423C:p.P141P	7qF5	chr7-12304531-145323643	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	CTG	synonymous	G	5	GGGGG	NA
M5	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	257	63	16	0.253968254	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9992374	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	155	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999724	GTA	synonymous	NA	NA	NA	NA
M5	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	349	168	37	0.220238095	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	1.95E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M5	chr8	11454234	12A2p6	cell line	sgMsh2	11454234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	85	11	1	0.090909091	exonic	Rab20	synonymous SNV	Rab20:NM_011227:exon2:c.C465A:p.A155A	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989856	GGG	synonymous	NA	NA	NA	NA
M5	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	243	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	5.07E-08	AAG	synonymous	NA	NA	NA	NA
M5	chr8	12616134	12A2p6	cell line	sgMsh2	12616134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	47	43	7	0.162790698	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon21:c.A2447G:p.Q816R	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.627535004	2	0.7255531	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	116	60	7	0.116666667	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9934095	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	164	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999929	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	69	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.8770167	TCG	synonymous	NA	NA	NA	NA
M5	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	133	73	19	0.260273973	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr8	15125173	12A2p6	cell line	sgMsh2	15125173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	52	0	0	NA	exonic	Myom2	nonsynonymous SNV	Myom2:NM_008664:exon32:c.T3751C:p.C1251R	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9919936	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	126	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.80137916	1	0.8369289	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	15921821	12A2p6	cell line	sgMsh2	15921821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	36	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon58:c.A9008T:p.Y3003F	8qA1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9784253	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	81	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	41	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9841483	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr8	21084450	12A2p6	cell line	sgMsh2	21084450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	87	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.A9G:p.T3T	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9991052	CAC	synonymous	NA	NA	NA	NA
M5	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	92	1	1	1	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9993462	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr8	23104908	12A2p6	cell line	sgMsh2	23104908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	23	14	0.608695652	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon17:c.A2018G:p.H673R,Ank1:NM_001277280:exon17:c.A2018G:p.H673R,Ank1:NM_001277281:exon17:c.A1907G:p.H636R,Ank1:NM_001277284:exon17:c.A1907G:p.H636R,Ank1:NM_001277286:exon17:c.A1931G:p.H644R,Ank1:NM_001277289:exon17:c.A1931G:p.H644R,Ank1:NM_031158:exon17:c.A1931G:p.H644R"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.873460883	1	0.9650174	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	209	1	0	0	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	144	3	0	0	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.903141593	NA	NA	GAG	frameshift	NA	NA	NA	-1
M5	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	58	1	0	0	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9944939	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr8	25032976	12A2p6	cell line	sgMsh2	25032976	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	157	0	0	NA	exonic	Htra4	frameshift deletion	Htra4:NM_001081187:exon5:c.1001delG:p.G334Vfs*3	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr8	27121957	12A2p6	cell line	sgMsh2	27121957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	15	22	4	0.181818182	exonic	Adgra2	synonymous SNV	Adgra2:NM_054044:exon19:c.T3933C:p.D1311D	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9237734	ATG	synonymous	NA	NA	NA	NA
M5	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	164	30	8	0.266666667	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999929	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	94	16	2	0.125	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.788658856	1	0.7756306	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	80	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.602094395	2	0.9671641	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	82	66	13	0.196969697	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.09452258	GGG	synonymous	NA	NA	NA	NA
M5	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	89	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	GTT	synonymous	NA	NA	NA	NA
M5	chr8	40551654	12A2p6	cell line	sgMsh2	40551654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	79	23	10	0.434782609	exonic	Mtmr7	nonsynonymous SNV	Mtmr7:NM_001040699:exon14:c.T1880C:p.V627A	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	157	87	23	0.264367816	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.758978146	2	0.6052858	CTA	synonymous	NA	NA	NA	NA
M5	chr8	41303997	12A2p6	cell line	sgMsh2	41303997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	69	73	16	0.219178082	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon23:c.T3945C:p.S1315S	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.792898957	1	0.8045689	GTG	synonymous	NA	NA	NA	NA
M5	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	448	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	527	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	130	245	62	0.253061224	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	45036912	12A2p6	cell line	sgMsh2	45036912	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	186	212	4	0.018867925	exonic	Fat1	frameshift deletion	Fat1:NM_001081286:exon18:c.10791delG:p.G3599Afs*2	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M5	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	162	28	11	0.392857143	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9996269	CAC	synonymous	NA	NA	NA	NA
M5	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	173	48	15	0.3125	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.999996	TTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	77	85	1	0.011764706	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M5	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	82	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9987755	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr8	55037411	12A2p6	cell line	sgMsh2	55037411	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	157	0	0	NA	exonic	Gpm6a	nonsynonymous SNV	"Gpm6a:NM_001253754:exon2:c.G88A:p.A30T,Gpm6a:NM_153581:exon2:c.G121A:p.A41T"	8qB1.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9999869	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	194	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	140	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999679	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	150	3	0	0	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999829	TGT	nonsynonymous	NA	NA	NA	NA
M5	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	118	169	50	0.295857988	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.9288946	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr8	58472973	12A2p6	cell line	sgMsh2	58472973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	85	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon3:c.A257C:p.E86A	8qB2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.996423823	1	0.9988844	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	112	50	12	0.24	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998138	ATA	synonymous	NA	NA	NA	NA
M5	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	48	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9897301	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	28	3	0.107142857	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	67960592	12A2p6	cell line	sgMsh2	67960592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	138	24	5	0.208333333	exonic	Psd3	nonsynonymous SNV	Psd3:NM_177698:exon3:c.C1285T:p.P429S	8qB3.2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr8	68282404	12A2p6	cell line	sgMsh2	68282404	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	95	114	0	0	exonic	Sh2d4a	frameshift deletion	Sh2d4a:NM_028182:exon2:c.174delA:p.E61Rfs*19	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.962503012	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	118	23	5	0.217391304	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998723	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	157	576	132	0.229166667	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.999989	CGA	synonymous	NA	NA	NA	NA
M5	chr8	69911801	12A2p6	cell line	sgMsh2	69911801	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	51	135	32	0.237037037	exonic	Gatad2a	nonsynonymous SNV	Gatad2a:NM_001286450:exon12:c.A1585G:p.T529A	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.991479	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	59	33	4	0.121212121	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9948274	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	70243552	12A2p6	cell line	sgMsh2	70243552	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	121	32	0	0	exonic	Sugp2	frameshift deletion	"Sugp2:NM_001168290:exon3:c.1174delT:p.L393fs*0,Sugp2:NM_172755:exon3:c.1174delT:p.L393fs*0"	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5	chr8	70509313	12A2p6	cell line	sgMsh2	70509313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	177	95	10	0.105263158	exonic	Uba52	nonsynonymous SNV	"Uba52:NM_001348229:exon2:c.A173G:p.D58G,Uba52:NM_001348227:exon3:c.A173G:p.D58G,Uba52:NM_001348228:exon3:c.A173G:p.D58G,Uba52:NM_019883:exon3:c.A173G:p.D58G"	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9911845	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	75	47	10	0.212765957	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9981005	CTG	synonymous	NA	NA	NA	NA
M5	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	146	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.999978	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	55	19	6	0.315789474	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9360659	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M5	chr8	72253610	12A2p6	cell line	sgMsh2	72253610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	114	118	25	0.211864407	exonic	Ap1m1	nonsynonymous SNV	Ap1m1:NM_007456:exon9:c.G1024A:p.V342M	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr8	72449701	12A2p6	cell line	sgMsh2	72449701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	35	17	3	0.176470588	exonic	1700030K09Rik	synonymous SNV	1700030K09Rik:NM_028170:exon3:c.T972C:p.S324S	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9770586	CTG	synonymous	NA	NA	NA	NA
M5	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	78	28	8	0.285714286	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9984262	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	42	72	22	0.305555556	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9850991	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	77344744	12A2p6	cell line	sgMsh2	77344744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	130	32	7	0.21875	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon17:c.T1546C:p.F516L,Arhgap10:NM_001363420:exon17:c.T1237C:p.F413L,Arhgap10:NM_001363418:exon18:c.T1612C:p.F538L,Arhgap10:NM_001363419:exon18:c.T1303C:p.F435L,Arhgap10:NM_001363421:exon18:c.T1303C:p.F435L,Arhgap10:NM_030113:exon18:c.T1612C:p.F538L"	8qC1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	77344798	12A2p6	cell line	sgMsh2	77344798	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	36	13	0.361111111	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon17:c.G1492A:p.V498M,Arhgap10:NM_001363420:exon17:c.G1183A:p.V395M,Arhgap10:NM_001363418:exon18:c.G1558A:p.V520M,Arhgap10:NM_001363419:exon18:c.G1249A:p.V417M,Arhgap10:NM_001363421:exon18:c.G1249A:p.V417M,Arhgap10:NM_030113:exon18:c.G1558A:p.V520M"	8qC1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	ACG	nonsynonymous	NA	NA	NA	NA
M5	chr8	79663746	12A2p6	cell line	sgMsh2	79663746	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	122	130	27	0.207692308	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon12:c.G984A:p.K328K,Otud4:NM_001256033:exon12:c.G987A:p.K329K"	8qC1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.809859363	1	0.8761778	AGC	synonymous	NA	NA	NA	NA
M5	chr8	80784644	12A2p6	cell line	sgMsh2	80784644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	13	2	0.153846154	exonic	Gab1	nonsynonymous SNV	"Gab1:NM_001301298:exon6:c.T1571C:p.L524P,Gab1:NM_021356:exon6:c.T1571C:p.L524P"	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9929322	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	123	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.9205391	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr8	83294283	12A2p6	cell line	sgMsh2	83294283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	123	0	0	NA	exonic	Ucp1	synonymous SNV	Ucp1:NM_009463:exon4:c.A627G:p.A209A	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.977145	CAG	synonymous	NA	NA	NA	NA
M5	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	68	235	39	0.165957447	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.716577132	2	8.48E-07	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M5	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	93	86	19	0.220930233	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9615167	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	21	15	3	0.2	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9464499	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	48	152	25	0.164473684	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.758978146	1	0.7206123	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	86019109	12A2p6	cell line	sgMsh2	86019109	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	130	45	11	0.244444444	exonic	Phkb	nonsynonymous SNV	"Phkb:NM_001364412:exon20:c.C1954T:p.H652Y,Phkb:NM_199446:exon21:c.C1930T:p.H644Y,Phkb:NM_001364411:exon23:c.C1777T:p.H593Y"	8qC3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	TCA	nonsynonymous	NA	NA	NA	NA
M5	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	168	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.784418754	1	0.6838048	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	63	62	12	0.193548387	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	TTT	nonsynonymous	G	5	GGGGG	NA
M5	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	183	27	3	0.111111111	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999978	ATC	synonymous	NA	NA	NA	NA
M5	chr8	93353526	12A2p6	cell line	sgMsh2	93353526	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	190	0	0	NA	exonic	Ces1h	nonsynonymous SNV	Ces1h:NM_001370830:exon12:c.C1359A:p.S453R	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9999978	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	126	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999227	CAA	synonymous	NA	NA	NA	NA
M5	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	58	34	4	0.117647059	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9944939	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	49	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9891337	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	75	111	20	0.18018018	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.699616727	2	7.31E-07	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	95068179	12A2p6	cell line	sgMsh2	95068179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	141	0	0	NA	exonic	Drc7	nonsynonymous SNV	Drc7:NM_001042715:exon8:c.T1211C:p.L404P	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9989774	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	95101421	12A2p6	cell line	sgMsh2	95101421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	73	51	6	0.117647059	exonic	Kifc3	synonymous SNV	"Kifc3:NM_001145832:exon16:c.C2047T:p.L683L,Kifc3:NM_001372315:exon18:c.C2458T:p.L820L,Kifc3:NM_010631:exon18:c.C2458T:p.L820L,Kifc3:NM_001372316:exon19:c.C2245T:p.L749L,Kifc3:NM_001372317:exon19:c.C2245T:p.L749L,Kifc3:NM_001145831:exon20:c.C2320T:p.L774L,Kifc3:NM_001372312:exon20:c.C2926T:p.L976L,Kifc3:NM_001372314:exon20:c.C2779T:p.L927L,Kifc3:NM_001372313:exon21:c.C2779T:p.L927L"	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	AGT	synonymous	NA	NA	NA	NA
M5	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	86	193	44	0.227979275	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9687901	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	203	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.890421289	1	0.9993533	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	102636982	12A2p6	cell line	sgMsh2	102636982	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	153	0	0	NA	exonic	Cdh11	nonsynonymous SNV	Cdh11:NM_009866:exon12:c.G1840A:p.G614S	8qD1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999858	CCG	nonsynonymous	NA	NA	NA	NA
M5	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	168	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999945	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	40	166	36	0.21686747	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.983138	TCG	nonsynonymous	NA	NA	NA	NA
M5	chr8	104526304	12A2p6	cell line	sgMsh2	104526304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	123	277	40	0.144404332	exonic	Nae1	nonsynonymous SNV	Nae1:NM_144931:exon7:c.A487G:p.R163G	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999067	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	142	16	0.112676056	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	CTT	synonymous	NA	NA	NA	NA
M5	chr8	104630778	12A2p6	cell line	sgMsh2	104630778	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	35	4	0	0	exonic	Rrad	nonsynonymous SNV	Rrad:NM_019662:exon2:c.C136A:p.L46I	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9770586	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	267	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999999	GAC	synonymous	NA	NA	NA	NA
M5	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	117	199	49	0.246231156	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.999864	AAT	nonsynonymous	NA	NA	NA	NA
M5	chr8	105663967	12A2p6	cell line	sgMsh2	105663967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	65	121	34	0.280991736	exonic	Ctcf	nonsynonymous SNV	"Ctcf:NM_001358924:exon3:c.A205G:p.T69A,Ctcf:NM_181322:exon3:c.A205G:p.T69A"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	105695429	12A2p6	cell line	sgMsh2	105695429	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	41	3	1	0.333333333	exonic	Carmil2	nonsynonymous SNV	Carmil2:NM_001357333:exon32:c.C3329A:p.P1110H	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9841483	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	68	25	4	0.16	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.9243421	1	0.9854344	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	101	31	0	0	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.979463418	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5	chr8	105844945	12A2p6	cell line	sgMsh2	105844945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	165	50	15	0.3	exonic	Cenpt	nonsynonymous SNV	Cenpt:NM_177150:exon13:c.A1475G:p.Y492C	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999933	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	121	2	1	0.5	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998942	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	130	46	4	0.086956522	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999399	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	113	26	6	0.230769231	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998251	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	94	25	0.265957447	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9645396	GGC	synonymous	NA	NA	NA	NA
M5	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	33	20	6	0.3	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	GCC	nonsynonymous	NA	NA	NA	NA
M5	chr8	106424126	12A2p6	cell line	sgMsh2	106424126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	115	44	9	0.204545455	exonic	Zfp90	nonsynonymous SNV	"Zfp90:NM_001368328:exon4:c.T530C:p.V177A,Zfp90:NM_001368329:exon4:c.T446C:p.V149A,Zfp90:NM_001368330:exon4:c.T374C:p.V125A,Zfp90:NM_001368331:exon4:c.T344C:p.V115A,Zfp90:NM_011764:exon4:c.T470C:p.V157A"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	73	3	2	0.666666667	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9971659	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	78	47	11	0.234042553	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9910694	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	108947092	12A2p6	cell line	sgMsh2	108947092	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	38	19	2	0.105263158	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A4773G:p.A1591A	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9809238	CAA	synonymous	NA	NA	NA	NA
M5	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	134	31	7	0.225806452	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	GAG	synonymous	NA	NA	NA	NA
M5	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	79	62	23	0.370967742	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M5	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	438	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	1.00E-09	ACA	synonymous	NA	NA	NA	NA
M5	chr8	109724013	12A2p6	cell line	sgMsh2	109724013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	168	23	7	0.304347826	exonic	Zfp821	nonsynonymous SNV	"Zfp821:NM_001363382:exon7:c.A637G:p.S213G,Zfp821:NM_001286393:exon8:c.A184G:p.S62G,Zfp821:NM_001363381:exon8:c.A637G:p.S213G,Zfp821:NM_001363383:exon8:c.A637G:p.S213G,Zfp821:NM_001363384:exon8:c.A184G:p.S62G,Zfp821:NM_001363386:exon8:c.A184G:p.S62G,Zfp821:NM_029468:exon8:c.A637G:p.S213G,Zfp821:NM_001167946:exon9:c.A637G:p.S213G,Zfp821:NM_001286391:exon9:c.A184G:p.S62G,Zfp821:NM_001363380:exon9:c.A637G:p.S213G,Zfp821:NM_001363385:exon9:c.A184G:p.S62G"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999945	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr8	109962037	12A2p6	cell line	sgMsh2	109962037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	31	5	0	0	exonic	Marveld3	nonsynonymous SNV	"Marveld3:NM_028584:exon1:c.A71G:p.H24R,Marveld3:NM_212447:exon1:c.A71G:p.H24R"	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	9.91E-08	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	152	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9987647	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	73	14	3	0.214285714	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	TAC	synonymous	NA	NA	NA	NA
M5	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	118	449	94	0.20935412	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9997273	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	111112792	12A2p6	cell line	sgMsh2	111112792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	122	7	3	0.428571429	exonic	Pdpr	synonymous SNV	Pdpr:NM_198308:exon5:c.T546C:p.D182D	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999006	ATG	synonymous	NA	NA	NA	NA
M5	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	161	11	3	0.272727273	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999914	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	111288399	12A2p6	cell line	sgMsh2	111288399	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	115	50	11	0.22	exonic	Rfwd3	nonsynonymous SNV	Rfwd3:NM_146218:exon5:c.C820A:p.P274T	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9996239	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	92	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	0.6258677	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	113639733	12A2p6	cell line	sgMsh2	113639733	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	123	21	5	0.238095238	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon4:c.C1360A:p.L454M,Mon1b:NM_001048143:exon5:c.C1360A:p.L454M"	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.966743114	1	0.9996644	ACT	nonsynonymous	AGCGAC	12	AGCGACAGCGAC	NA
M5	chr8	114230323	12A2p6	cell line	sgMsh2	114230323	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	100	0	0	NA	exonic	Vat1l	frameshift deletion	Vat1l:NM_173016:exon2:c.345delA:p.G117Dfs*34	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5	chr8	117758761	12A2p6	cell line	sgMsh2	117758761	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.243	113	4	1	0.25	exonic	Hsd17b2	frameshift insertion	Hsd17b2:NM_008290:exon5:c.962_963insA:p.V322Cfs*39	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CCT	frameshift	NA	NA	NA	1
M5	chr8	119522492	12A2p6	cell line	sgMsh2	119522492	G	A	SNV	Mutect2;Vardict	2	0.06	74	171	0	0	exonic	Mbtps1	synonymous SNV	"Mbtps1:NM_001167910:exon15:c.C2058T:p.D686D,Mbtps1:NM_019709:exon16:c.C2058T:p.D686D"	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.254406083	3	0.9936153	CGT	synonymous	NA	NA	NA	NA
M5	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	74	67	16	0.23880597	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.725057335	2	0.5414215	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	121939729	12A2p6	cell line	sgMsh2	121939729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	73	0	0	NA	exonic	Car5a	synonymous SNV	Car5a:NM_007608:exon2:c.A228G:p.P76P	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9978467	GTG	synonymous	NA	NA	NA	NA
M5	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	71	219	55	0.251141553	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9975592	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M5	chr8	122454948	12A2p6	cell line	sgMsh2	122454948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	50	4	1	0.25	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon3:c.A769G:p.T257A	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9909316	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	38	4	1	0.25	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.9641675	GCG	nonsynonymous	NA	NA	NA	NA
M5	chr8	122496403	12A2p6	cell line	sgMsh2	122496403	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	43	49	1	0.020408163	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon19:c.G2646T:p.E882D,Piezo1:NM_001357349:exon19:c.G2649T:p.E883D"	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9859936	CCT	nonsynonymous	NA	NA	NA	NA
M5	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Vardict	2	0.095	44	84	15	0.178571429	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.402809631	2	0.8477792	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	68	105	18	0.171428571	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	8.08E-08	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	49	2	0	0	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9532755	GGC	synonymous	NA	NA	NA	NA
M5	chr8	123235758	12A2p6	cell line	sgMsh2	123235758	G	A	SNV	Mutect2;MuSe;Vardict	3	0.221	17	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon1:c.C63T:p.G21G,Spata2l:NM_001357301:exon2:c.C63T:p.G21G,Spata2l:NM_030176:exon2:c.C63T:p.G21G"	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.09227964	GGC	synonymous	GCCGC	10	GCCGCGCCGC	NA
M5	chr8	123369263	12A2p6	cell line	sgMsh2	123369263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	46	46	14	0.304347826	exonic	Spire2	nonsynonymous SNV	Spire2:NM_172287:exon15:c.T2026C:p.C676R	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.941302505	1	0.9733396	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	138	9	3	0.333333333	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999636	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M5	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	65	54	13	0.240740741	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	2	1	1	0.9964459	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	82	28	3	0.107142857	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.631775105	2	0.9396694	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	178	66	21	0.318181818	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9996801	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	83	121	35	0.289256198	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9859472	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	32	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.201	72	45	4	0.088888889	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	267	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M5	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	105	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.822579667	1	0.9103958	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	135	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.742017741	2	0.704035	ATG	synonymous	GAT	8	GATGATGA	NA
M5	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	80	7	1	0.142857143	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9960629	TCA	synonymous	NA	NA	NA	NA
M5	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	185	354	76	0.214689266	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999938	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	7833726	12A2p6	cell line	sgMsh2	7833726	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	133	46	20	0.434782609	exonic	Birc2	synonymous SNV	"Birc2:NM_001291503:exon2:c.G753A:p.R251R,Birc2:NM_007465:exon2:c.G753A:p.R251R"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	ACC	synonymous	NA	NA	NA	NA
M5	chr9	8649519	12A2p6	cell line	sgMsh2	8649519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.T1729C:p.Y577H	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9994585	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr9	13813432	12A2p6	cell line	sgMsh2	13813432	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	63	99	2	0.02020202	exonic	Cep57	frameshift deletion	"Cep57:NM_001310721:exon7:c.788delA:p.K263Rfs*16,Cep57:NM_026665:exon7:c.788delA:p.K263Rfs*24"	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	CTT	frameshift	T	15	TTTTTTTTTATTTTT	-1
M5	chr9	14357861	12A2p6	cell line	sgMsh2	14357861	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	30	6	0.2	exonic	Endod1	synonymous SNV	Endod1:NM_028013:exon2:c.G327A:p.E109E	9qA1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.835299971	1	0.9523801	CCT	synonymous	NA	NA	NA	NA
M5	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.291	145	49	13	0.265306122	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999766	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	15332156	12A2p6	cell line	sgMsh2	15332156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	167	33	8	0.242424242	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon15:c.C5003T:p.A1668V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9997542	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	15944850	12A2p6	cell line	sgMsh2	15944850	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	92	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon21:c.A11647T:p.I3883F	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.737777639	2	7.75E-09	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	102	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9996511	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	166	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr9	19036033	12A2p6	cell line	sgMsh2	19036033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	89	0	0	NA	exonic	Olfr835	nonsynonymous SNV	Olfr835:NM_001012266:exon1:c.A909T:p.K303N	9qA2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	AAT	nonsynonymous	A	5	AAAAA	NA
M5	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	151	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999839	TAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	20054659	12A2p6	cell line	sgMsh2	20054659	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	0	0	NA	exonic	Olfr867	nonsynonymous SNV	Olfr867:NM_001011748:exon1:c.C803T:p.T268I	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9812668	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	112	45	12	0.266666667	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.415529935	2	0.7569486	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	66	34	7	0.205882353	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9966616	CAA	nonsynonymous	A	5	AAAAA	NA
M5	chr9	21309648	12A2p6	cell line	sgMsh2	21309648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	90	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon2:c.A187C:p.S63R,Ap1m2:NM_009678:exon2:c.A187C:p.S63R"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992588	CTG	nonsynonymous	NA	NA	NA	NA
M5	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	57	207	43	0.207729469	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.994139	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	57	197	58	0.294416244	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.937062404	1	0.9822039	GCT	synonymous	NA	NA	NA	NA
M5	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.176	33	1	0	0	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.746257842	1	0.7320723	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M5	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	115	41	5	0.12195122	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	TAC	synonymous	NA	NA	NA	NA
M5	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	140	64	13	0.203125	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999679	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M5	chr9	27322727	12A2p6	cell line	sgMsh2	27322727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	68	0	0	NA	exonic	Igsf9b	synonymous SNV	"Igsf9b:NM_001326702:exon9:c.C1221T:p.G407G,Igsf9b:NM_001384263:exon9:c.C1221T:p.G407G,Igsf9b:NM_001384264:exon9:c.C1221T:p.G407G"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9729532	GCC	synonymous	NA	NA	NA	NA
M5	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	33	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9740672	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	89	66	17	0.257575758	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9908245	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	42	795	162	0.203773585	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.826819768	1	0.8715733	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	83	7	3	0.428571429	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.860740579	1	0.9588839	CGC	synonymous	NA	NA	NA	NA
M5	chr9	31419820	12A2p6	cell line	sgMsh2	31419820	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	135	25	5	0.2	exonic	Nfrkb	synonymous SNV	"Nfrkb:NM_001359654:exon25:c.T2907C:p.S969S,Nfrkb:NM_172766:exon25:c.T3636C:p.S1212S"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.992183722	1	0.9999389	GTG	synonymous	NA	NA	NA	NA
M5	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	228	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9980553	TAG	synonymous	NA	NA	NA	NA
M5	chr9	35136421	12A2p6	cell line	sgMsh2	35136421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	112	218	37	0.169724771	exonic	Dcps	nonsynonymous SNV	Dcps:NM_027030:exon3:c.C442T:p.R148C	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9993072	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	60	202	48	0.237623762	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	1	0.9951408	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	150	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999829	AGG	synonymous	NA	NA	NA	NA
M5	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	72	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9956009	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	4	2	0.5	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995787	TAT	synonymous	NA	NA	NA	NA
M5	chr9	37898140	12A2p6	cell line	sgMsh2	37898140	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	188	0	0	NA	exonic	Olfr145	synonymous SNV	Olfr145:NM_146313:exon1:c.T735A:p.I245I	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999984	TTG	synonymous	NA	NA	NA	NA
M5	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	248	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	3.73E-08	GTA	synonymous	NA	NA	NA	NA
M5	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	130	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999632	AGA	nonsynonymous	NA	NA	NA	NA
M5	chr9	38116618	12A2p6	cell line	sgMsh2	38116618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	184	0	0	NA	exonic	Olfr889	frameshift deletion	Olfr889:NM_146482:exon1:c.821delT:p.Y276Ifs*7	9qA4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5	chr9	38253495	12A2p6	cell line	sgMsh2	38253495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	324	0	0	NA	exonic	Olfr143	nonsynonymous SNV	Olfr143:NM_146806:exon1:c.T77C:p.L26P	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	1.31E-09	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	38254138	12A2p6	cell line	sgMsh2	38254138	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	255	0	0	NA	exonic	Olfr143	synonymous SNV	Olfr143:NM_146806:exon1:c.C720A:p.A240A	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	2.44E-08	CCT	synonymous	NA	NA	NA	NA
M5	chr9	38403054	12A2p6	cell line	sgMsh2	38403054	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	198	0	0	NA	exonic	Olfr147	frameshift deletion	Olfr147:NM_146869:exon2:c.179delC:p.M62Cfs*23	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	267	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	1.20E-08	TTT	synonymous	NA	NA	NA	NA
M5	chr9	38581310	12A2p6	cell line	sgMsh2	38581310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	173	0	0	NA	exonic	Olfr912	nonsynonymous SNV	Olfr912:NM_146810:exon2:c.A32G:p.E11G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999996	GAA	nonsynonymous	ATTC	8	ATTCATTC	NA
M5	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	206	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.962503012	1	0.9999943	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	253	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	2.75E-08	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	254	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.979463418	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	196	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999999	CCT	synonymous	NA	NA	NA	NA
M5	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	210	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999996	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999998	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	214	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	39462266	12A2p6	cell line	sgMsh2	39462266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	256	0	0	NA	exonic	Olfr954	synonymous SNV	Olfr954:NM_146331:exon1:c.T834C:p.S278S	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	2.30E-08	CTG	synonymous	NA	NA	NA	NA
M5	chr9	39572368	12A2p6	cell line	sgMsh2	39572368	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	138	0	0	NA	exonic	Olfr959	nonsynonymous SNV	Olfr959:NM_146508:exon1:c.T890G:p.L297R	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9997794	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	229	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9952724	CTG	synonymous	NA	NA	NA	NA
M5	chr9	39719725	12A2p6	cell line	sgMsh2	39719725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	291	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T497C:p.V166A	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	3.44E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	214	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9999979	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	52	1	0	0	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.720817234	1	7.04E-06	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	133	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999502	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M5	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	30	7	4	0.571428571	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9688568	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	151	83	26	0.313253012	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9829842	CAG	synonymous	NA	NA	NA	NA
M5	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	80	12	4	0.333333333	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986118	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	44105221	12A2p6	cell line	sgMsh2	44105221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	91	0	0	NA	exonic	Mfrp	synonymous SNV	"Mfrp:NM_001190314:exon10:c.G1212T:p.T404T,Mfrp:NM_147126:exon10:c.G1212T:p.T404T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.993266	CGG	synonymous	NA	NA	NA	NA
M5	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	34	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9756076	ACG	synonymous	NA	NA	NA	NA
M5	chr9	44140473	12A2p6	cell line	sgMsh2	44140473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	107	1	0	0	exonic	Mcam	nonsynonymous SNV	"Mcam:NM_001359530:exon12:c.T1525C:p.S509P,Mcam:NM_023061:exon12:c.T1525C:p.S509P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997451	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	44402403	12A2p6	cell line	sgMsh2	44402403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	83	28	7	0.25	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.G1225A:p.V409I,Slc37a4:NM_001293630:exon9:c.G1225A:p.V409I,Slc37a4:NM_001293631:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378830:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378834:exon9:c.G1138A:p.V380I,Slc37a4:NM_001357729:exon10:c.G1288A:p.V430I,Slc37a4:NM_001357730:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378829:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378831:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378832:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378833:exon10:c.G1201A:p.V401I"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	AGT	nonsynonymous	NA	NA	NA	NA
M5	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	170	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M5	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	43	10	0.23255814	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9859936	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	44715884	12A2p6	cell line	sgMsh2	44715884	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	113	31	6	0.193548387	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon6:c.C1263A:p.P421P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.814099464	1	0.888637	AGG	synonymous	NA	NA	NA	NA
M5	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	68	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	TGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	45950101	12A2p6	cell line	sgMsh2	45950101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	101	106	25	0.235849057	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_001289668:exon7:c.T734C:p.V245A,Sidt2:NM_001359653:exon7:c.T734C:p.V245A,Sidt2:NM_172257:exon7:c.T734C:p.V245A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9897257	CAC	nonsynonymous	ACC	11	ACCACCACCAC	NA
M5	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	99	16	6	0.375	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.682656321	2	0.8870121	CTC	synonymous	NA	NA	NA	NA
M5	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	46	22	4	0.181818182	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.563933483	2	0.8605192	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	50494646	12A2p6	cell line	sgMsh2	50494646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	123	60	12	0.2	exonic	Plet1	synonymous SNV	Plet1:NM_029639:exon1:c.T84C:p.S28S	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9967118	GTG	synonymous	NA	NA	NA	NA
M5	chr9	51850243	12A2p6	cell line	sgMsh2	51850243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	134	0	0	NA	exonic	Arhgap20	nonsynonymous SNV	Arhgap20:NM_175535:exon15:c.G3393T:p.K1131N	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999532	AGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	156	12	2	0.166666667	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999883	TTT	nonsynonymous	NA	NA	NA	NA
M5	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	231	46	0	0	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	108	3	1	0.333333333	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9997606	CAT	synonymous	NA	NA	NA	NA
M5	chr9	55430309	12A2p6	cell line	sgMsh2	55430309	A	G	SNV	Mutect2;MuSe;Vardict	3	0.389	18	0	0	NA	exonic	Tmem266	nonsynonymous SNV	"Tmem266:NM_001357568:exon9:c.A428G:p.Q143R,Tmem266:NM_172923:exon9:c.A803G:p.Q268R"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	1	0.9360476	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	55609946	12A2p6	cell line	sgMsh2	55609946	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	176	24	8	0.333333333	exonic	Scaper	synonymous SNV	"Scaper:NM_001081341:exon27:c.A3204T:p.P1068P,Scaper:NM_001357652:exon27:c.A3186T:p.P1062P"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999967	CTG	synonymous	NA	NA	NA	NA
M5	chr9	56206453	12A2p6	cell line	sgMsh2	56206453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	56	44	11	0.25	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon7:c.C5203T:p.R1735C	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.818339565	1	0.8684085	CGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.021	808	53	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.089042129	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	162	73	18	0.246575342	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9999717	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M5	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	35	21	4	0.19047619	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9770586	CAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	57530298	12A2p6	cell line	sgMsh2	57530298	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	198	1131	257	0.227232538	exonic	Cox5a	nonsynonymous SNV	Cox5a:NM_007747:exon3:c.C263T:p.A88V	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999992	GCA	nonsynonymous	NA	NA	NA	NA
M5	chr9	57548646	12A2p6	cell line	sgMsh2	57548646	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	55	74	12	0.162162162	exonic	Mpi	synonymous SNV	Mpi:NM_025837:exon5:c.T552C:p.G184G	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.763218248	1	7.67E-07	CAC	synonymous	CCCA	9	CCCACCCAC	NA
M5	chr9	58233168	12A2p6	cell line	sgMsh2	58233168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	56	9	0.160714286	exonic	Pml	synonymous SNV	"Pml:NM_001311088:exon4:c.T1275C:p.P425P,Pml:NM_008884:exon4:c.T1275C:p.P425P,Pml:NM_178087:exon4:c.T1275C:p.P425P"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9985219	CAG	synonymous	NA	NA	NA	NA
M5	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	118	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.975223316	1	0.9996811	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	125	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	169	13	3	0.230769231	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9873188	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	113	2646	485	0.18329554	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.928582201	1	0.9978185	GGA	nonsynonymous	NA	NA	NA	NA
M5	chr9	60602735	12A2p6	cell line	sgMsh2	60602735	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	144	21	6	0.285714286	exonic	Lrrc49	synonymous SNV	"Lrrc49:NM_001146046:exon12:c.C1251T:p.T417T,Lrrc49:NM_001311095:exon12:c.C1233T:p.T411T,Lrrc49:NM_001146047:exon13:c.C1431T:p.T477T,Lrrc49:NM_145616:exon13:c.C1449T:p.T483T"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	GGG	synonymous	NA	NA	NA	NA
M5	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	143	61	10	0.163934426	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999734	GTA	nonsynonymous	NA	NA	NA	NA
M5	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	61	34	3	0.088235294	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.7362087	GAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	27	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9626395	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr9	63146869	12A2p6	cell line	sgMsh2	63146869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	57	0	0	NA	exonic	Skor1	nonsynonymous SNV	Skor1:NM_172446:exon1:c.G45T:p.W15C	9qB	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.994139	CCC	nonsynonymous	NA	NA	NA	NA
M5	chr9	65556120	12A2p6	cell line	sgMsh2	65556120	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	89	49	5	0.102040816	exonic	Plekho2	nonsynonymous SNV	Plekho2:NM_153119:exon6:c.A1446C:p.K482N	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.77169845	1	0.6866708	GTT	nonsynonymous	T	5	TTTTT	NA
M5	chr9	65651680	12A2p6	cell line	sgMsh2	65651680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	85	1	1	1	exonic	Rbpms2	synonymous SNV	Rbpms2:NM_028030:exon6:c.T534C:p.A178A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9989856	CTG	synonymous	CTG	16	CTGCTGCTGCTGCTGC	NA
M5	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	218	63	11	0.174603175	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	88	17	5	0.294117647	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9991597	GTA	synonymous	NA	NA	NA	NA
M5	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	102	23	8	0.347826087	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.843780174	1	0.9513569	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M5	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	188	20	4	0.2	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999984	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	31	2	0.064516129	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9859936	GGC	nonsynonymous	NA	NA	NA	NA
M5	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	107	114	49	0.429824561	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	1	0.9997451	GCT	synonymous	NA	NA	NA	NA
M5	chr9	71284968	12A2p6	cell line	sgMsh2	71284968	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	98	0	0	NA	exonic	Aldh1a2	frameshift deletion	Aldh1a2:NM_009022:exon10:c.1201delC:p.T402Pfs*24	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	128	142	33	0.232394366	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999318	GTT	nonsynonymous	NA	NA	NA	NA
M5	chr9	71849873	12A2p6	cell line	sgMsh2	71849873	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	83	152	46	0.302631579	exonic	Tcf12	nonsynonymous SNV	"Tcf12:NM_001253864:exon12:c.A1449C:p.K483N,Tcf12:NM_001253863:exon13:c.A1521C:p.K507N,Tcf12:NM_001253865:exon14:c.A1302C:p.K434N,Tcf12:NM_001253862:exon19:c.A1959C:p.K653N,Tcf12:NM_011544:exon20:c.A2031C:p.K677N"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	CTT	nonsynonymous	T	5	TTTTT	NA
M5	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	138	1	1	1	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9950625	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	132	78	26	0.333333333	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999947	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	6	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999386	AAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	168	35	8	0.228571429	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.9994243	AAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	147	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.754738045	2	0.6216263	ATG	nonsynonymous	NA	NA	NA	NA
M5	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	149	26111	6071	0.232507372	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	TTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	141	1	1	1	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.780178653	1	0.6703658	GTT	synonymous	NA	NA	NA	NA
M5	chr9	79674801	12A2p6	cell line	sgMsh2	79674801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	75	0	0	NA	exonic	Col12a1	synonymous SNV	Col12a1:NM_001290308:exon22:c.T4167G:p.T1389T	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.987943621	1	0.9974807	TAG	synonymous	NA	NA	NA	NA
M5	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.362	73	223	20	0.089686099	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
M5	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	144	99	28	0.282828283	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.999975	TAC	synonymous	NA	NA	NA	NA
M5	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9993742	ATT	nonsynonymous	NA	NA	NA	NA
M5	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2549	51	115	5	0.043478261	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5	chr9	86550146	12A2p6	cell line	sgMsh2	86550146	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	165	12	1	0.083333333	exonic	Dop1a	frameshift deletion	Dop1a:NM_177208:exon37:c.6932delA:p.N2312Ifs*21	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	84	24	0.285714286	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995514	TAG	synonymous	NA	NA	NA	NA
M5	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	68	21	4	0.19047619	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	TTT	nonsynonymous	T	5	TTTTT	NA
M5	chr9	87225934	12A2p6	cell line	sgMsh2	87225934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	23	5	0.217391304	exonic	Cep162	synonymous SNV	Cep162:NM_199316:exon13:c.A1402C:p.R468R	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9436911	CTG	synonymous	NA	NA	NA	NA
M5	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	54	59	10	0.169491525	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9929322	AAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	89974840	12A2p6	cell line	sgMsh2	89974840	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	93	0	0	NA	exonic	Rasgrf1	synonymous SNV	"Rasgrf1:NM_001357743:exon9:c.C1344T:p.G448G,Rasgrf1:NM_011245:exon9:c.C1350T:p.G450G"	9qE3.1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.970983215	1	0.9985725	GCT	synonymous	NA	NA	NA	NA
M5	chr9	95228955	12A2p6	cell line	sgMsh2	95228955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	83	0	0	NA	exonic	Slc9a9	nonsynonymous SNV	Slc9a9:NM_177909:exon16:c.A1825G:p.K609E	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	95937526	12A2p6	cell line	sgMsh2	95937526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	78	34	7	0.205882353	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon39:c.A6565G:p.M2189V	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.720817234	2	0.5896449	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	95969548	12A2p6	cell line	sgMsh2	95969548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	122	33	6	0.181818182	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon5:c.T618C:p.D206D,Xrn1:NM_011916:exon5:c.T618C:p.D206D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9923913	ATG	synonymous	NA	NA	NA	NA
M5	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	89	38	7	0.184210526	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9992108	GAA	nonsynonymous	T	5	TTTTT	NA
M5	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.311	126	96	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M5	chr9	96546304	12A2p6	cell line	sgMsh2	96546304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	85	43	10	0.23255814	exonic	Rasa2	synonymous SNV	Rasa2:NM_053268:exon20:c.A1956G:p.P652P	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9770633	CTG	synonymous	NA	NA	NA	NA
M5	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	109	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.9614133	TAC	synonymous	NA	NA	NA	NA
M5	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	103	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.89466139	1	0.9903153	TAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	41	24	1	0.041666667	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.937062404	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5	chr9	99320290	12A2p6	cell line	sgMsh2	99320290	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	48	0	0	NA	exonic	Esyt3	nonsynonymous SNV	Esyt3:NM_177775:exon16:c.G1567A:p.V523M	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.737777639	1	6.73E-06	ACA	nonsynonymous	NA	NA	NA	NA
M5	chr9	99663045	12A2p6	cell line	sgMsh2	99663045	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	29	3	0.103448276	exonic	Dzip1l	nonsynonymous SNV	"Dzip1l:NM_001311142:exon13:c.C1717T:p.L573F,Dzip1l:NM_028258:exon13:c.C1717T:p.L573F"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.95402281	1	0.9743042	TCT	nonsynonymous	NA	NA	NA	NA
M5	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	235	75	14	0.186666667	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	77	65	11	0.169230769	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.674176119	2	0.8118231	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	73	64	10	0.15625	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.70809693	2	6.32E-07	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	235	152	41	0.269736842	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M5	chr9	105022362	12A2p6	cell line	sgMsh2	105022362	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	129	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.C1297T:p.P433S,Cpne4:NM_001378996:exon14:c.C1267T:p.P423S,Cpne4:NM_028719:exon14:c.C1243T:p.P415S"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9996549	TCC	nonsynonymous	NA	NA	NA	NA
M5	chr9	105071376	12A2p6	cell line	sgMsh2	105071376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	129	31	0.240310078	exonic	Mrpl3	synonymous SNV	"Mrpl3:NM_001364512:exon7:c.T315C:p.T105T,Mrpl3:NM_001364513:exon7:c.T630C:p.T210T,Mrpl3:NM_053159:exon7:c.T630C:p.T210T"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9988499	GTA	synonymous	NA	NA	NA	NA
M5	chr9	105397382	12A2p6	cell line	sgMsh2	105397382	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	168	12	0	0	exonic	Aste1	nonsynonymous SNV	"Aste1:NM_025651:exon2:c.G820C:p.V274L,Aste1:NM_001357902:exon3:c.G637C:p.V213L"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.907381694	1	0.9992807	CGT	nonsynonymous	NA	NA	NA	NA
M5	chr9	105715324	12A2p6	cell line	sgMsh2	105715324	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	173	0	0	NA	exonic	Col6a6	frameshift deletion	Col6a6:NM_001102607:exon30:c.5185delT:p.S1729Pfs*46	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.975223316	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	161	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.856500478	1	0.9882941	ATC	nonsynonymous	NA	NA	NA	NA
M5	chr9	105928109	12A2p6	cell line	sgMsh2	105928109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	125	0	0	NA	exonic	Col6a5	synonymous SNV	Col6a5:NM_001167923:exon8:c.T3597C:p.N1199N	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999177	TAT	synonymous	NA	NA	NA	NA
M5	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	115	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998458	CAA	nonsynonymous	NA	NA	NA	NA
M5	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	65	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	72	17	0.236111111	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.848020275	1	0.09364856	GCT	synonymous	NA	NA	NA	NA
M5	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	68	65	15	0.230769231	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9970545	ACT	nonsynonymous	NA	NA	NA	NA
M5	chr9	106896764	12A2p6	cell line	sgMsh2	106896764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	39	0	0	NA	exonic	Dock3	frameshift deletion	Dock3:NM_153413:exon52:c.5555delC:p.P1852Rfs*44	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M5	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	102	2	1	0.5	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.881941086	1	0.9851027	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	124	153	31	0.202614379	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999124	CTT	nonsynonymous	NA	NA	NA	NA
M5	chr9	108050857	12A2p6	cell line	sgMsh2	108050857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	149	56	6	0.107142857	exonic	Gmppb	nonsynonymous SNV	"Gmppb:NM_177910:exon7:c.A649G:p.M217V,Gmppb:NM_001357682:exon8:c.A649G:p.M217V"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999818	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M5	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	157	33	9	0.272727273	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.746257842	2	0.7412656	CAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	114	4	4	1	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	CTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	108110038	12A2p6	cell line	sgMsh2	108110038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	71	1	0	0	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon5:c.A8514G:p.I2838M	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.852260377	1	0.9387819	CTA	nonsynonymous	NA	NA	NA	NA
M5	chr9	108305809	12A2p6	cell line	sgMsh2	108305809	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	38	9	3	0.333333333	exonic	Tcta	nonsynonymous SNV	"Tcta:NM_001311156:exon1:c.C136A:p.L46M,Tcta:NM_133986:exon1:c.C136A:p.L46M"	9qF1	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.669936017	1	0.5035676	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	72	116	24	0.206896552	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.856500478	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	65	4	2	0.5	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9964459	CCT	synonymous	NA	NA	NA	NA
M5	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	114	22	0.192982456	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.903141593	1	0.9845302	TAC	synonymous	NA	NA	NA	NA
M5	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	91	8	4	0.5	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.665695916	2	0.0952117	GTG	synonymous	NA	NA	NA	NA
M5	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	52	14	1	0.071428571	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	2	1	1	0.9919936	GTC	nonsynonymous	NA	NA	NA	NA
M5	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	139	281	66	0.234875445	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999658	GCT	nonsynonymous	NA	NA	NA	NA
M5	chr9	110385878	12A2p6	cell line	sgMsh2	110385878	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	104	83	16	0.192771084	exonic	Ptpn23	nonsynonymous SNV	Ptpn23:NM_001081043:exon24:c.T4535G:p.V1512G	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.869220782	1	0.9787366	GAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	110390906	12A2p6	cell line	sgMsh2	110390906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	167	86	17	0.197674419	exonic	Ptpn23	synonymous SNV	Ptpn23:NM_001081043:exon12:c.T948C:p.N316N	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999941	CAT	synonymous	NA	NA	NA	NA
M5	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	114	16	1	0.0625	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9998358	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M5	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	81	4	0	0	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9986962	ATA	synonymous	NA	NA	NA	NA
M5	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	57	55	13	0.236363636	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.945542607	1	0.984664	GGA	nonsynonymous	G	5	GGGGG	NA
M5	chr9	112127355	12A2p6	cell line	sgMsh2	112127355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	32	0	0	NA	exonic	Arpp21	nonsynonymous SNV	"Arpp21:NM_001177617:exon12:c.A1247G:p.Q416R,Arpp21:NM_001177616:exon14:c.A1394G:p.Q465R,Arpp21:NM_001177618:exon14:c.A1454G:p.Q485R,Arpp21:NM_001362014:exon14:c.A1454G:p.Q485R,Arpp21:NM_001362016:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362017:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362018:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362038:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362039:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362010:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362011:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362012:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362015:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362028:exon15:c.A1496G:p.Q499R,Arpp21:NM_001362029:exon15:c.A1496G:p.Q499R,Arpp21:NM_001362030:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362031:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362032:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362033:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362034:exon15:c.A1451G:p.Q484R,Arpp21:NM_001362035:exon15:c.A1451G:p.Q484R,Arpp21:NM_001362036:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362037:exon15:c.A1454G:p.Q485R,Arpp21:NM_033264:exon15:c.A1553G:p.Q518R,Arpp21:NM_001362013:exon16:c.A1454G:p.Q485R,Arpp21:NM_001362020:exon16:c.A1556G:p.Q519R,Arpp21:NM_001362021:exon16:c.A1556G:p.Q519R,Arpp21:NM_001362022:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362023:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362024:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362025:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362026:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362027:exon16:c.A1550G:p.Q517R,Arpp21:NM_001362040:exon16:c.A707G:p.Q236R,Arpp21:NM_001362041:exon16:c.A704G:p.Q235R"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9724323	CTG	nonsynonymous	TGC	8	TGCTGCTG	NA
M5	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	29	6	3	0.5	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9669045	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	97	124	36	0.290322581	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9995224	ATC	nonsynonymous	A	5	AAAAA	NA
M5	chr9	115257544	12A2p6	cell line	sgMsh2	115257544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	34	274	45	0.164233577	exonic	Stt3b	nonsynonymous SNV	Stt3b:NM_024222:exon7:c.T1006C:p.Y336H	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9756076	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	119105859	12A2p6	cell line	sgMsh2	119105859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	108	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon2:c.A469G:p.M157V,Dlec1:NM_001368821:exon2:c.A469G:p.M157V,Dlec1:NM_177117:exon2:c.A469G:p.M157V"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.864980681	1	0.9775445	CAT	nonsynonymous	NA	NA	NA	NA
M5	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	140	1	0	0	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999679	GAG	nonsynonymous	NA	NA	NA	NA
M5	chr9	119127041	12A2p6	cell line	sgMsh2	119127041	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	93	0	0	NA	exonic	Dlec1	synonymous SNV	"Dlec1:NM_001368820:exon14:c.C2148A:p.P716P,Dlec1:NM_001368821:exon14:c.C2148A:p.P716P,Dlec1:NM_177117:exon14:c.C2151A:p.P717P"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.915861897	1	0.9929387	CCT	synonymous	NA	NA	NA	NA
M5	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	63	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.995972	GTG	nonsynonymous	NA	NA	NA	NA
M5	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	102	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.932822303	1	0.9970288	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M5	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	45	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9876267	CCC	synonymous	NA	NA	NA	NA
M5	chr9	119950626	12A2p6	cell line	sgMsh2	119950626	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	36	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon10:c.G1119T:p.Q373H	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9784253	AGG	nonsynonymous	NA	NA	NA	NA
M5	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	135	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.920101999	1	0.9987173	GAT	synonymous	NA	NA	NA	NA
M5	chr9	122892365	12A2p6	cell line	sgMsh2	122892365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	6	2	0.333333333	exonic	Zkscan7	nonsynonymous SNV	Zkscan7:NM_001177505:exon4:c.A604G:p.T202A	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.911621796	1	0.985585	TAC	nonsynonymous	NA	NA	NA	NA
M5	chr9	123011533	12A2p6	cell line	sgMsh2	123011533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	140	77	17	0.220779221	exonic	Kif15	synonymous SNV	Kif15:NM_010620:exon30:c.A3591G:p.Q1197Q	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.983703519	1	0.9999345	AAT	synonymous	NA	NA	NA	NA
M5	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	84	91	19	0.208791209	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.886181188	1	0.9789053	CAC	synonymous	NA	NA	NA	NA
M5	chr9	123119243	12A2p6	cell line	sgMsh2	123119243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	131	149	50	0.33557047	exonic	Exosc7	synonymous SNV	Exosc7:NM_001081188:exon3:c.T162C:p.G54G	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	0.958262911	1	0.9996876	GTC	synonymous	NA	NA	NA	NA
M5	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	143	70	15	0.214285714	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	1	0.9999734	ATA	nonsynonymous	NA	NA	NA	NA
M5	chr9	124029335	12A2p6	cell line	sgMsh2	124029335	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	109	0	0	NA	exonic	Ccr3	frameshift deletion	Ccr3:NM_009914:exon2:c.706delA:p.K238Nfs*11	9qF4	chr9-4330518-124127055	4	2	2	0.99	4.197700362	NA	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M5	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	22	5	2	0.4	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M5	chrX	7616007	12A2p6	cell line	sgMsh2	7616007	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.604	55	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon14:c.C1729A:p.L577I	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M5	chrX	7641185	12A2p6	cell line	sgMsh2	7641185	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	63	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon3:c.C191T:p.A64V	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M5	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	46	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M5	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	67	9	6	0.666666667	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M5	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	41	35	11	0.314285714	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M5	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	141	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M5	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	135	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5	chrX	20718726	12A2p6	cell line	sgMsh2	20718726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	48	46	31	0.673913043	exonic	Usp11	synonymous SNV	"Usp11:NM_145628:exon17:c.A2211G:p.P737P,Usp11:NM_001358931:exon18:c.A1869G:p.P623P"	XqA1.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M5	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	128	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M5	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	36	5	3	0.6	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M5	chrX	57101982	12A2p6	cell line	sgMsh2	57101982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	74	0	0	NA	exonic	Vgll1	nonsynonymous SNV	"Vgll1:NM_133251:exon6:c.T685C:p.C229R,Vgll1:NM_001313763:exon7:c.T685C:p.C229R"	XqA6	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M5	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.596	45	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	66	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M5	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	101	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5	chrX	74273791	12A2p6	cell line	sgMsh2	74273791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	75	16	7	0.4375	exonic	Dnase1l1	nonsynonymous SNV	"Dnase1l1:NM_001370787:exon6:c.T677C:p.L226P,Dnase1l1:NM_001172154:exon7:c.T755C:p.L252P,Dnase1l1:NM_027109:exon7:c.T755C:p.L252P"	XqA7.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAG	nonsynonymous	TCAG	8	TCAGTCAG	NA
M5	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.529	67	104	42	0.403846154	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M5	chrX	74369835	12A2p6	cell line	sgMsh2	74369835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.544	58	15	3	0.2	exonic	Slc10a3	synonymous SNV	"Slc10a3:NM_001256104:exon2:c.A1038G:p.L346L,Slc10a3:NM_145406:exon3:c.A1038G:p.L346L"	XqA7.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M5	chrX	75574969	12A2p6	cell line	sgMsh2	75574969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.595	39	3	2	0.666666667	exonic	Rab39b	nonsynonymous SNV	Rab39b:NM_175122:exon2:c.G254A:p.G85D	XqA7.3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M5	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.597	76	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M5	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	60	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M5	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	95	4	2	0.5	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M5	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.603	54	469	245	0.52238806	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.596	13	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	51	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M5	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.486	65	131	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	67	55	32	0.581818182	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M5	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	99	14	0	0	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M5	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	44	100	42	0.42	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M5	chrX	106252195	12A2p6	cell line	sgMsh2	106252195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	155	0	0	NA	exonic	Fnd3c2	synonymous SNV	Fnd3c2:NM_001033424:exon2:c.T213C:p.N71N	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M5	chrX	107871178	12A2p6	cell line	sgMsh2	107871178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	93	0	0	NA	exonic	Tent5d	nonsynonymous SNV	"Tent5d:NM_001163104:exon6:c.A865G:p.I289V,Tent5d:NM_001271008:exon6:c.A865G:p.I289V"	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M5	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	85	27	14	0.518518519	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M5	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.559	40	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M5	chrX	122396617	12A2p6	cell line	sgMsh2	122396617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	88	0	0	NA	exonic	Nap1l3	synonymous SNV	Nap1l3:NM_138742:exon1:c.T403C:p.L135L	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M5	chrX	127721448	12A2p6	cell line	sgMsh2	127721448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	73	0	0	NA	exonic	Cldn34c4	nonsynonymous SNV	Cldn34c4:NM_001281537:exon2:c.T398C:p.V133A	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	51	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M5	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	47	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M5	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	34	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	50	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M5	chrX	140427939	12A2p6	cell line	sgMsh2	140427939	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	58	0	0	NA	exonic	Frmpd3	synonymous SNV	Frmpd3:NM_001320946:exon14:c.C1788A:p.S596S	XqF1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M5	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	44	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M5	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.443	9	22	11	0.5	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M5	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	62	16	7	0.4375	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	135	114	42	0.368421053	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5	chrX	161178252	12A2p6	cell line	sgMsh2	161178252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.481	91	0	0	NA	exonic	Scml2	frameshift deletion	"Scml2:NM_001290651:exon4:c.309delT:p.L104Yfs*9,Scml2:NM_001290652:exon4:c.309delT:p.L104Yfs*9"	XqF4	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	47	1	0	0	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5	chrX	167729093	12A2p6	cell line	sgMsh2	167729093	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	41	0	0	NA	exonic	Frmpd4	synonymous SNV	"Frmpd4:NM_001359072:exon2:c.C75A:p.T25T,Frmpd4:NM_001368936:exon2:c.C84A:p.T28T,Frmpd4:NM_001290427:exon3:c.C60A:p.T20T,Frmpd4:NM_001369234:exon4:c.C138A:p.T46T,Frmpd4:NM_001033330:exon5:c.C60A:p.T20T"	XqF5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M5	chrX	168796769	12A2p6	cell line	sgMsh2	168796769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	18	0	0	NA	exonic	Arhgap6	synonymous SNV	Arhgap6:NM_009707:exon1:c.A549G:p.P183P	XqF5	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M5	chrY	899517	12A2p6	cell line	sgMsh2	899517	G	T	SNV	Mutect2;Vardict	2	0.107	38	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon3:c.G318T:p.E106D	YqA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M5	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	83	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5	chrY	928352	12A2p6	cell line	sgMsh2	928352	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	51	0	0	NA	exonic	Kdm5d	synonymous SNV	Kdm5d:NM_011419:exon17:c.A2481G:p.Q827Q	YqA1	NA	NA	NA	NA	0.99	4.197700362	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	68	0	0	NA	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.730823041	2	7.23E-06	TGG	synonymous	NA	NA	NA	NA
M5_p20	chr1	6230003	12A2p6	cell line	sgMsh2	6230003	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	200	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon3:c.A1G:p.M1V	1qA1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999955	CAT	nonsynonymous	ATC	8	ATCATCAT	NA
M5_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	46	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.855492854	1	0.876432	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.937531	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	242	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.627648024	2	0.9999934	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	10172927	12A2p6	cell line	sgMsh2	10172927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	72	0	0	NA	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon21:c.C3187T:p.P1063S	1qA2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.700730328	2	0.7330358	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	373	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	1.36E-09	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M5_p20	chr1	12848191	12A2p6	cell line	sgMsh2	12848191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	370	0	0	NA	exonic	Sulf1	nonsynonymous SNV	"Sulf1:NM_001198566:exon18:c.C2378T:p.A793V,Sulf1:NM_001198565:exon19:c.C2378T:p.A793V,Sulf1:NM_172294:exon19:c.C2378T:p.A793V"	1qA3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	1.42E-09	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	18251323	12A2p6	cell line	sgMsh2	18251323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	115	0	0	NA	exonic	Defb41	synonymous SNV	Defb41:NM_183124:exon2:c.T66C:p.H22H	1qA3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.985235	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	89	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.9494178	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	131	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	TGC	synonymous	NA	NA	NA	NA
M5_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	124	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.9186191	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	25226773	12A2p6	cell line	sgMsh2	25226773	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	146	0	0	NA	exonic	Adgrb3	synonymous SNV	Adgrb3:NM_175642:exon18:c.C2658T:p.G886G	1qA5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.584658433	2	0.9997732	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	136	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.9984711	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	28778145	12A2p6	cell line	sgMsh2	28778145	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.177	288	0	0	NA	exonic	Gm597	frameshift insertion	Gm597:NM_001013750:exon2:c.804dupA:p.C269Mfs*5	1qA5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.760915755	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5_p20	chr1	28778570	12A2p6	cell line	sgMsh2	28778570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	94	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A380G:p.K127R	1qA5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	47	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9814936	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	57	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9891899	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	33484699	12A2p6	cell line	sgMsh2	33484699	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	354	0	0	NA	exonic	Prim2	nonsynonymous SNV	Prim2:NM_008922:exon11:c.G1130A:p.G377D	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	2.01E-09	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	141	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.55456572	2	0.9996449	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	36192425	12A2p6	cell line	sgMsh2	36192425	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	289	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon14:c.T1458G:p.P486P	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	3.59E-08	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	270	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999999	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	59	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.765214714	1	0.6333479	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	37498728	12A2p6	cell line	sgMsh2	37498728	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	18	0	0	NA	exonic	Mgat4a	nonsynonymous SNV	"Mgat4a:NM_001290801:exon2:c.C107A:p.A36D,Mgat4a:NM_173870:exon3:c.C107A:p.A36D"	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	9.28E-05	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	46	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9804764	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	38535658	12A2p6	cell line	sgMsh2	38535658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	84	0	0	NA	exonic	Aff3	synonymous SNV	Aff3:NM_001290814:exon3:c.A240G:p.K80K	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9389949	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr1	39402906	12A2p6	cell line	sgMsh2	39402906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	188	0	0	NA	exonic	Tbc1d8	nonsynonymous SNV	"Tbc1d8:NM_001357521:exon5:c.T649C:p.W217R,Tbc1d8:NM_001357522:exon5:c.T604C:p.W202R,Tbc1d8:NM_018775:exon5:c.T604C:p.W202R"	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.59755531	2	0.9999751	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	40767820	12A2p6	cell line	sgMsh2	40767820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	75	0	0	NA	exonic	Slc9a2	nonsynonymous SNV	Slc9a2:NM_001033289:exon12:c.G2266A:p.G756R	1qB	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.627648024	2	0.9382066	CGG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr1	44766105	12A2p6	cell line	sgMsh2	44766105	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	369	0	0	NA	exonic	Gulp1	nonsynonymous SNV	Gulp1:NM_028450:exon6:c.C353T:p.S118F	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.584658433	2	1.06E-09	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	168	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9888564	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	300	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.791008468	2	0.6661242	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	46099446	12A2p6	cell line	sgMsh2	46099446	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	385	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon7:c.T515G:p.L172R	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	1.19E-09	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	46596904	12A2p6	cell line	sgMsh2	46596904	C	A	SNV	Mutect2;MuSe;Vardict	3	0.087	231	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon21:c.C3286A:p.L1096I	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.374009439	3	0.999958	CCT	nonsynonymous	CCTCA	10	CCTCACCTCA	NA
M5_p20	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	32	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9590175	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	169	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999757	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;MuSe;Vardict	3	0.128	300	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.550266761	2	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	296	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.679235533	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	141	0	0	NA	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9993781	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	170	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	0.6067435	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	51	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.985067	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M5_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	127	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9959412	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	154	0	0	NA	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.700730328	2	0.9773215	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	58829002	12A2p6	cell line	sgMsh2	58829002	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	124	0	0	NA	exonic	Casp8	nonsynonymous SNV	"Casp8:NM_001080126:exon4:c.T541G:p.S181A,Casp8:NM_009812:exon4:c.T541G:p.S181A,Casp8:NM_001277926:exon5:c.T601G:p.S201A"	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.640544901	2	0.9929898	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	59199042	12A2p6	cell line	sgMsh2	59199042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	112	0	0	NA	exonic	Als2	nonsynonymous SNV	"Als2:NM_001159948:exon10:c.A2130G:p.I710M,Als2:NM_028717:exon10:c.A2130G:p.I710M,Als2:NM_146109:exon10:c.A2130G:p.I710M"	1qC1.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9994562	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	59556301	12A2p6	cell line	sgMsh2	59556301	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	24	0	0	NA	exonic	Gm973	nonsynonymous SNV	"Gm973:NM_001357842:exon6:c.C941T:p.P314L,Gm973:NM_001013771:exon8:c.C1250T:p.P417L"	1qC2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9379775	CCA	nonsynonymous	AAAAG	10	AAAAGAAAAG	NA
M5_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	101	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9990096	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	195	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999941	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	130	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.786709509	1	0.5826426	CTG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr1	67160957	12A2p6	cell line	sgMsh2	67160957	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	192	0	0	NA	exonic	Cps1	nonsynonymous SNV	Cps1:NM_001080809:exon12:c.G1263T:p.E421D	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9989624	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	67177025	12A2p6	cell line	sgMsh2	67177025	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	0	0	NA	exonic	Cps1	synonymous SNV	Cps1:NM_001080809:exon20:c.C2508T:p.N836N	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9984686	ACC	synonymous	NA	NA	NA	NA
M5_p20	chr1	71317232	12A2p6	cell line	sgMsh2	71317232	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	193	0	0	NA	exonic	Abca12	synonymous SNV	Abca12:NM_175210:exon15:c.C1815T:p.N605N	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999934	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	183	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.760915755	2	0.81668	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	149	0	0	NA	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999188	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	216	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9994755	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	123	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	252	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.999997	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	77	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9963425	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	74921451	12A2p6	cell line	sgMsh2	74921451	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	0	0	NA	exonic	Cfap65	nonsynonymous SNV	Cfap65:NM_001039495:exon13:c.T2359G:p.F787V	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	120	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8561086	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	65	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.833998059	1	0.8551489	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	84738700	12A2p6	cell line	sgMsh2	84738700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	154	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon32:c.C4847T:p.A1616V	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.846894936	1	0.946067	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	126	0	0	NA	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9762491	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	140	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9922993	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	100	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	95	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986266	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	87049738	12A2p6	cell line	sgMsh2	87049738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	0	0	NA	exonic	Dis3l2	nonsynonymous SNV	"Dis3l2:NM_153530:exon21:c.A2606G:p.E869G,Dis3l2:NM_001172157:exon22:c.A2648G:p.E883G"	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9949336	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	170	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.812503264	1	0.7848943	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	87379988	12A2p6	cell line	sgMsh2	87379988	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	320	0	0	NA	exonic	Gigyf2	nonsynonymous SNV	"Gigyf2:NM_001110212:exon8:c.A515G:p.K172R,Gigyf2:NM_146112:exon8:c.A515G:p.K172R"	1qC5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	7.43E-09	AAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr1	88232287	12A2p6	cell line	sgMsh2	88232287	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	845	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon6:c.A600T:p.I200I	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.210648994	3	1	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	362	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.283731298	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	88277397	12A2p6	cell line	sgMsh2	88277397	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	105	0	0	NA	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon1:c.T73G:p.L25V,Hjurp:NM_198652:exon1:c.T73G:p.L25V"	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.399803193	3	0.09791063	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	20	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9239751	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M5_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	141	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998881	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	211	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	133	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.442792784	3	8.81E-07	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	93408448	12A2p6	cell line	sgMsh2	93408448	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	128	0	0	NA	exonic	Hdlbp	frameshift deletion	"Hdlbp:NM_001301364:exon27:c.3641delC:p.P1214Qfs*30,Hdlbp:NM_001357556:exon27:c.3641delC:p.P1214Qfs*30,Hdlbp:NM_133808:exon27:c.3641delC:p.P1214Qfs*30"	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	166	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999714	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	93689190	12A2p6	cell line	sgMsh2	93689190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	64	0	0	NA	exonic	Bok	nonsynonymous SNV	Bok:NM_016778:exon3:c.A257G:p.Y86C	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9925954	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	124	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9938926	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Vardict	2	0.117	72	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.502978211	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr1	107379917	12A2p6	cell line	sgMsh2	107379917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	197	0	0	NA	exonic	Serpinb11	synonymous SNV	Serpinb11:NM_025867:exon8:c.A1077G:p.T359T	1qE2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8551065	CAG	synonymous	CAGTT	12	CAGTTCAGTTCA	NA
M5_p20	chr1	111862558	12A2p6	cell line	sgMsh2	111862558	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	361	0	0	NA	exonic	Dsel	frameshift deletion	Dsel:NM_001081316:exon2:c.246delT:p.F82Lfs*7	1qE2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.358	246	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5_p20	chr1	116188300	12A2p6	cell line	sgMsh2	116188300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	319	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon10:c.A1511C:p.N504T,Cntnap5a:NM_001371013:exon10:c.A1514C:p.N505T"	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	4.48E-08	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	116412208	12A2p6	cell line	sgMsh2	116412208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	155	0	0	NA	exonic	Cntnap5a	synonymous SNV	"Cntnap5a:NM_001077425:exon14:c.A2196G:p.R732R,Cntnap5a:NM_001371013:exon14:c.A2199G:p.R733R"	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.571761556	2	0.9999039	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr1	118837734	12A2p6	cell line	sgMsh2	118837734	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	96	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.C2686A:p.R896S	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.9635187	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	64	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9925954	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	233	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.64484386	2	0.9999647	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	155	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.261	207	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999969	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	126	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997465	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	116	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9933154	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	124	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	129678174	12A2p6	cell line	sgMsh2	129678174	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	178	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon7:c.A1651C:p.I551L	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999851	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	292	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.666338655	2	0.9999883	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	274	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9999978	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	131758835	12A2p6	cell line	sgMsh2	131758835	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	82	0	0	NA	exonic	Slc26a9	nonsynonymous SNV	Slc26a9:NM_177243:exon11:c.A1292C:p.K431T	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9845634	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	131759481	12A2p6	cell line	sgMsh2	131759481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	263	0	0	NA	exonic	Slc26a9	synonymous SNV	Slc26a9:NM_177243:exon12:c.T1377C:p.S459S	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	79	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr1	131981619	12A2p6	cell line	sgMsh2	131981619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	53	0	0	NA	exonic	Slc45a3	nonsynonymous SNV	"Slc45a3:NM_001177628:exon5:c.A1553G:p.H518R,Slc45a3:NM_145977:exon5:c.A1553G:p.H518R"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9865897	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M5_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	102	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9990621	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	182	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9996536	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr1	133067152	12A2p6	cell line	sgMsh2	133067152	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	162	0	0	NA	exonic	Pik3c2b	nonsynonymous SNV	Pik3c2b:NM_001099276:exon2:c.C853A:p.P285T	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999644	CCC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	70	0	0	NA	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.994651	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	85	0	0	NA	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9860193	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	133320995	12A2p6	cell line	sgMsh2	133320995	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	99	0	0	NA	exonic	Golt1a	frameshift deletion	Golt1a:NM_026680:exon4:c.301delT:p.F102Sfs*16	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr1	133376953	12A2p6	cell line	sgMsh2	133376953	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	exonic	Etnk2	nonsynonymous SNV	Etnk2:NM_175443:exon6:c.G913A:p.V305M	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9897579	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	133386824	12A2p6	cell line	sgMsh2	133386824	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	41	0	0	NA	exonic	Sox13	frameshift deletion	Sox13:NM_011439:exon9:c.942delC:p.A315Pfs*82	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.743719919	NA	NA	CGG	frameshift	TGGC	8	TGGCTGGC	-1
M5_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.214	21	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.8866341	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	133645798	12A2p6	cell line	sgMsh2	133645798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	222	0	0	NA	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon4:c.A103G:p.T35A,Zc3h11a:NM_144530:exon4:c.A103G:p.T35A,Zc3h11a:NM_001276767:exon5:c.A103G:p.T35A"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9999181	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	133659294	12A2p6	cell line	sgMsh2	133659294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	140	0	0	NA	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T304C:p.L102L	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.948305	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr1	133903704	12A2p6	cell line	sgMsh2	133903704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	261	0	0	NA	exonic	Optc	nonsynonymous SNV	"Optc:NM_001160421:exon3:c.C463A:p.L155I,Optc:NM_001160422:exon3:c.C463A:p.L155I,Optc:NM_054076:exon3:c.C463A:p.L155I,Optc:NM_001160420:exon4:c.C463A:p.L155I"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	134588851	12A2p6	cell line	sgMsh2	134588851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	244	0	0	NA	exonic	Kdm5b	synonymous SNV	Kdm5b:NM_152895:exon4:c.T480C:p.G160G	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999996	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr1	135137352	12A2p6	cell line	sgMsh2	135137352	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	143	0	0	NA	exonic	Ptpn7	nonsynonymous SNV	"Ptpn7:NM_001356382:exon6:c.T497G:p.I166S,Ptpn7:NM_177081:exon6:c.T497G:p.I166S"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.636245942	2	0.9977824	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.324	245	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.325	245	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999996	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	135472218	12A2p6	cell line	sgMsh2	135472218	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	65	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon5:c.C1613A:p.P538H	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9929857	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	135845588	12A2p6	cell line	sgMsh2	135845588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	81	0	0	NA	exonic	Tnnt2	nonsynonymous SNV	"Tnnt2:NM_001130180:exon4:c.G83A:p.G28D,Tnnt2:NM_001130181:exon4:c.G167A:p.G56D,Tnnt2:NM_011619:exon4:c.G83A:p.G28D,Tnnt2:NM_001130178:exon5:c.G95A:p.G32D,Tnnt2:NM_001130179:exon5:c.G179A:p.G60D"	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9970573	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	136527421	12A2p6	cell line	sgMsh2	136527421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	109	0	0	NA	exonic	Kif14	synonymous SNV	Kif14:NM_001287179:exon29:c.T4830C:p.C1610C	1qE4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.78241055	1	0.5912416	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr1	139516384	12A2p6	cell line	sgMsh2	139516384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	264	0	0	NA	exonic	F13b	synonymous SNV	F13b:NM_031164:exon9:c.T1455C:p.F485F	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9990063	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	192	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	398	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	1.09E-09	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr1	140570462	12A2p6	cell line	sgMsh2	140570462	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	171	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon23:c.G2676A:p.M892I	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999782	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	144004030	12A2p6	cell line	sgMsh2	144004030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	169	0	0	NA	exonic	Rgs2	nonsynonymous SNV	Rgs2:NM_009061:exon1:c.G89A:p.R30Q	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999757	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	144171481	12A2p6	cell line	sgMsh2	144171481	T	-	Deletion	Mutect2;Vardict	2	0.319	35	0	0	NA	exonic	Rgs13	stopgain	Rgs13:NM_153171:exon3:c.1delA:p.M1fs*0	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M5_p20	chr1	144753924	12A2p6	cell line	sgMsh2	144753924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	177	0	0	NA	exonic	Rgs18	nonsynonymous SNV	Rgs18:NM_022881:exon5:c.T596C:p.L199S	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999843	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	194	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.59755531	2	0.999983	TTT	synonymous	NA	NA	NA	NA
M5_p20	chr1	146701777	12A2p6	cell line	sgMsh2	146701777	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	144	0	0	NA	exonic	Brinp3	synonymous SNV	"Brinp3:NM_001145807:exon4:c.C549A:p.S183S,Brinp3:NM_153539:exon4:c.C549A:p.S183S,Brinp3:NM_001357571:exon5:c.C549A:p.S183S"	1qF	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.999905	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	74	0	0	NA	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.717926164	2	0.6687612	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	150664892	12A2p6	cell line	sgMsh2	150664892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	313	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon56:c.A8665G:p.T2889A	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	1.04E-08	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	95	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.343916725	3	0.9910974	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	211	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	200	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999948	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	48	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9824588	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	368	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.743719919	2	0.9981494	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	143	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.69213241	2	0.977159	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	301	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	1.91E-08	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	162545885	12A2p6	cell line	sgMsh2	162545885	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	91	0	0	NA	exonic	Eef1aknmt	nonsynonymous SNV	Eef1aknmt:NM_144877:exon2:c.G796A:p.G266R	1qH2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.343916725	3	0.9883935	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	250	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	258	0	0	NA	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.999986	CCA	synonymous	NA	NA	NA	NA
M5_p20	chr1	164286387	12A2p6	cell line	sgMsh2	164286387	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	101	0	0	NA	exonic	Ccdc181	synonymous SNV	Ccdc181:NM_029115:exon5:c.C1359A:p.A453A	1qH2.2	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990096	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	174	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999815	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	84	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9975004	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	97	0	0	NA	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	63	0	0	NA	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9921835	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	88	0	0	NA	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9824045	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	206	0	0	NA	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.730823041	2	0.9754938	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr1	171282585	12A2p6	cell line	sgMsh2	171282585	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	106	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon12:c.C1522A:p.L508I	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.339617766	3	0.9966481	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	197	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999921	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	111	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.619050106	2	0.9932127	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	72	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9952012	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	172599080	12A2p6	cell line	sgMsh2	172599080	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	132	0	0	NA	exonic	Fcrl6	frameshift deletion	Fcrl6:NM_001164725:exon3:c.298delA:p.S100Vfs*27	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.997358503	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	434	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	3.52E-09	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.364	392	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2	2	0.072	248	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.309525053	3	4.21E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	288	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.705029287	2	0.9996287	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	285	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.468586538	2	0.8460437	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	174231386	12A2p6	cell line	sgMsh2	174231386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	171	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon42:c.A5886G:p.L1962L	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999782	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	147	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999194	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	176868233	12A2p6	cell line	sgMsh2	176868233	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	111	0	0	NA	exonic	Sdccag8	nonsynonymous SNV	"Sdccag8:NM_001357390:exon10:c.C1102A:p.L368M,Sdccag8:NM_029756:exon10:c.C1102A:p.L368M"	1qH4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.705029287	2	0.8983577	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	94	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.739420959	2	0.6632734	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998173	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	48	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.976913	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	181819941	12A2p6	cell line	sgMsh2	181819941	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	99	0	0	NA	exonic	Lbr	stopgain	Lbr:NM_133815:exon10:c.C1270T:p.R424X	1qH5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9988955	CGC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M5_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	65	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.6290654	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr1	186968272	12A2p6	cell line	sgMsh2	186968272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	123	0	0	NA	exonic	D1Pas1	nonsynonymous SNV	D1Pas1:NM_033077:exon1:c.G397A:p.D133N	1qH5	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997015	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	188436966	12A2p6	cell line	sgMsh2	188436966	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	268	0	0	NA	exonic	Ush2a	synonymous SNV	Ush2a:NM_021408:exon15:c.G3303A:p.P1101P	1qH6	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	198	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.999995	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	164	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999681	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr1	195082677	12A2p6	cell line	sgMsh2	195082677	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	80	0	0	NA	exonic	Cd46	nonsynonymous SNV	Cd46:NM_010778:exon5:c.C611T:p.P204L	1qH6	chr1-3216742-195166209	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9959548	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	75	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9959226	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	84	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9668127	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	179	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999859	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	5222390	12A2p6	cell line	sgMsh2	5222390	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	177	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon78:c.A15071T:p.E5024V,Syne1:NM_001347732:exon78:c.A15050T:p.E5017V"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999843	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	189	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999918	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	5367590	12A2p6	cell line	sgMsh2	5367590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	206	0	0	NA	exonic	Syne1	synonymous SNV	"Syne1:NM_001347711:exon15:c.T1524C:p.R508R,Syne1:NM_001347732:exon15:c.T1503C:p.R501R,Syne1:NM_153399:exon15:c.T1503C:p.R501R"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.477184456	2	0.9336159	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	6830410	12A2p6	cell line	sgMsh2	6830410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	166	0	0	NA	exonic	Oprm1	synonymous SNV	"Oprm1:NM_001039652:exon3:c.A1071G:p.T357T,Oprm1:NM_001302793:exon3:c.A1071G:p.T357T,Oprm1:NM_001302794:exon3:c.A867G:p.T289T,Oprm1:NM_001302795:exon3:c.A867G:p.T289T,Oprm1:NM_001302796:exon3:c.A867G:p.T289T,Oprm1:NM_001304937:exon3:c.A1071G:p.T357T,Oprm1:NM_001304938:exon3:c.A1071G:p.T357T,Oprm1:NM_001304948:exon3:c.A1071G:p.T357T,Oprm1:NM_001304950:exon3:c.A1071G:p.T357T,Oprm1:NM_001304955:exon3:c.A1071G:p.T357T"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9603897	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	237	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	216	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999981	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	168	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999743	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	179	0	0	NA	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999859	CGC	synonymous	NA	NA	NA	NA
M5_p20	chr10	13253706	12A2p6	cell line	sgMsh2	13253706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	46	0	0	NA	exonic	Phactr2	synonymous SNV	"Phactr2:NM_001033257:exon5:c.C628T:p.L210L,Phactr2:NM_001359294:exon5:c.C481T:p.L161L,Phactr2:NM_001195065:exon6:c.C817T:p.L273L,Phactr2:NM_001195066:exon6:c.C607T:p.L203L,Phactr2:NM_001195096:exon6:c.C640T:p.L214L"	10qA2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.955444	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	187	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9995356	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	14130210	12A2p6	cell line	sgMsh2	14130210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	83	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A2551G:p.S851G,Hivep2:NM_001358782:exon5:c.A2551G:p.S851G,Hivep2:NM_001358783:exon8:c.A2551G:p.S851G"	10qA2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.769513673	1	0.5748239	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	115	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995382	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	132	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9951786	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	173	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9972441	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	82	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9972131	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	73	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9954548	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	20339787	12A2p6	cell line	sgMsh2	20339787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	107	0	0	NA	exonic	Bclaf1	nonsynonymous SNV	"Bclaf1:NM_001025393:exon11:c.C2473T:p.R825C,Bclaf1:NM_001025392:exon12:c.C2620T:p.R874C,Bclaf1:NM_153787:exon12:c.C2614T:p.R872C"	10qA3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9932625	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	81	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.7319852	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	24244309	12A2p6	cell line	sgMsh2	24244309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	301	0	0	NA	exonic	Moxd1	nonsynonymous SNV	Moxd1:NM_021509:exon2:c.A334G:p.M112V	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	1.91E-08	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	138	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.683534492	2	0.9806386	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	116	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.91997724	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr10	33779673	12A2p6	cell line	sgMsh2	33779673	T	-	Deletion	Mutect2;Vardict	2	0.026	456	0	0	NA	exonic	Sult3a2	frameshift deletion	Sult3a2:NM_001101452:exon2:c.309delA:p.Y104Ifs*2	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.111772936	NA	NA	ATG	frameshift	NA	NA	NA	-1
M5_p20	chr10	34605853	12A2p6	cell line	sgMsh2	34605853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	194	0	0	NA	exonic	Frk	nonsynonymous SNV	"Frk:NM_001159544:exon6:c.T1138G:p.F380V,Frk:NM_001358769:exon7:c.T1138G:p.F380V,Frk:NM_010237:exon7:c.T1138G:p.F380V"	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999938	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	144	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9980409	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr10	40466671	12A2p6	cell line	sgMsh2	40466671	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	291	0	0	NA	exonic	Cdk19	nonsynonymous SNV	"Cdk19:NM_001291816:exon5:c.C188A:p.P63H,Cdk19:NM_001291817:exon5:c.C29A:p.P10H,Cdk19:NM_001168304:exon6:c.C548A:p.P183H"	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.773812632	2	0.8910208	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	41256492	12A2p6	cell line	sgMsh2	41256492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	219	0	0	NA	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon12:c.C1317A:p.S439R	10qB1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999984	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	124	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	59	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.9736274	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	86	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	90	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	286	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	4.21E-08	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	116	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9988459	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	53073510	12A2p6	cell line	sgMsh2	53073510	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	53	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon5:c.A694C:p.I232L	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.610452187	2	0.8534161	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	56123586	12A2p6	cell line	sgMsh2	56123586	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	131	0	0	NA	exonic	Tbc1d32	nonsynonymous SNV	Tbc1d32:NM_001033385:exon22:c.G2489T:p.R830M	10qB3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	57527716	12A2p6	cell line	sgMsh2	57527716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	123	0	0	NA	exonic	Serinc1	synonymous SNV	Serinc1:NM_019760:exon2:c.A150G:p.V50V	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	321	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.999999	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	41	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.717926164	1	0.5591094	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	59339297	12A2p6	cell line	sgMsh2	59339297	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	130	0	0	NA	exonic	P4ha1	synonymous SNV	"P4ha1:NM_001316370:exon3:c.T78A:p.G26G,P4ha1:NM_001316371:exon3:c.T78A:p.G26G,P4ha1:NM_011030:exon3:c.T78A:p.G26G"	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997962	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr10	61180424	12A2p6	cell line	sgMsh2	61180424	A	-	Deletion	Strelka2;Vardict	2	0.4375	32	0	0	NA	exonic	Tbata	frameshift deletion	"Tbata:NM_001017407:exon4:c.576delA:p.R195delinsGLLKSPQCSAAGTGGEG,Tbata:NM_023064:exon4:c.678delA:p.R229delinsGLLKSPQCSAAGTGGEG,Tbata:NM_001017441:exon5:c.561delA:p.R190delinsGLLKSPQCSAAGTGGEG"	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	197	0	0	NA	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999947	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	62393777	12A2p6	cell line	sgMsh2	62393777	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	178	0	0	NA	exonic	Hkdc1	frameshift deletion	Hkdc1:NM_145419:exon15:c.2120delG:p.G707Afs*24	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.795307427	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5_p20	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	90	0	0	NA	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr10	62751842	12A2p6	cell line	sgMsh2	62751842	T	-	Deletion	Mutect2;Vardict	2	0.191	170	0	0	NA	exonic	Ccar1	frameshift deletion	Ccar1:NM_026201:exon19:c.2542delA:p.R848Efs*39	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.821101182	NA	NA	CTT	frameshift	TCTTT	11	TCTTTTCTTTT	-1
M5_p20	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	390	0	0	NA	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	1.51E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	98	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	68096898	12A2p6	cell line	sgMsh2	68096898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	33	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon10:c.A3173G:p.Y1058C	10qB5.2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9406936	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	0	0	NA	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.657740737	2	0.9539537	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	233	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	75158051	12A2p6	cell line	sgMsh2	75158051	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	183	0	0	NA	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon12:c.G2565T:p.E855D	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9893225	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	75585406	12A2p6	cell line	sgMsh2	75585406	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	203	0	0	NA	exonic	Ggt1	synonymous SNV	"Ggt1:NM_008116:exon11:c.C1353A:p.S451S,Ggt1:NM_001305992:exon12:c.C1353A:p.S451S,Ggt1:NM_001379540:exon12:c.C1353A:p.S451S,Ggt1:NM_001379541:exon12:c.C1353A:p.S451S,Ggt1:NM_001379537:exon13:c.C1353A:p.S451S,Ggt1:NM_001379538:exon13:c.C1353A:p.S451S,Ggt1:NM_001379539:exon13:c.C1353A:p.S451S"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.502978211	2	0.9957236	CCA	synonymous	NA	NA	NA	NA
M5_p20	chr10	75640498	12A2p6	cell line	sgMsh2	75640498	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	25	0	0	NA	exonic	Susd2	frameshift deletion	"Susd2:NM_001162913:exon4:c.573delC:p.C192Afs*61,Susd2:NM_027890:exon6:c.933delC:p.C312Afs*61"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.937173077	NA	NA	AGG	frameshift	NA	NA	NA	-1
M5_p20	chr10	75715643	12A2p6	cell line	sgMsh2	75715643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	44	0	0	NA	exonic	Cabin1	synonymous SNV	Cabin1:NM_172549:exon25:c.T3894C:p.P1298P	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	127	0	0	NA	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr10	75948382	12A2p6	cell line	sgMsh2	75948382	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	91	0	0	NA	exonic	Vpreb3	nonsynonymous SNV	"Vpreb3:NM_001358532:exon1:c.C25A:p.L9M,Vpreb3:NM_009514:exon1:c.C25A:p.L9M"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9982924	TCT	nonsynonymous	TGCC	9	TGCCTGCCT	NA
M5_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	186	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9677925	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	99	0	0	NA	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	82	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.717926164	2	0.7172176	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	356	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	1.90E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	211	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	158	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.6687152	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	78970145	12A2p6	cell line	sgMsh2	78970145	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	258	0	0	NA	exonic	Olfr1353	nonsynonymous SNV	Olfr1353:NM_147042:exon3:c.G495T:p.E165D	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	79194030	12A2p6	cell line	sgMsh2	79194030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	294	0	0	NA	exonic	Vmn2r80	synonymous SNV	Vmn2r80:NM_001103368:exon6:c.C1689T:p.H563H	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.855492854	1	0.9928512	ACT	synonymous	NA	NA	NA	NA
M5_p20	chr10	79746551	12A2p6	cell line	sgMsh2	79746551	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.5	8	0	0	NA	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon1:c.T2C:p.M1T	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.8611064	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	79866723	12A2p6	cell line	sgMsh2	79866723	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	157	0	0	NA	exonic	Plppr3	nonsynonymous SNV	"Plppr3:NM_001170935:exon5:c.A596C:p.K199T,Plppr3:NM_181681:exon5:c.A596C:p.K199T"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9989602	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	48	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9411967	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.185	39	0	0	NA	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	0.7656251	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	229	0	0	NA	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999991	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	80284460	12A2p6	cell line	sgMsh2	80284460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	8	0	0	NA	exonic	Dazap1	nonsynonymous SNV	"Dazap1:NM_001122604:exon10:c.C782T:p.P261L,Dazap1:NM_001122605:exon10:c.C779T:p.P260L,Dazap1:NM_001378995:exon10:c.C782T:p.P261L,Dazap1:NM_133188:exon10:c.C779T:p.P260L"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.8611064	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	98	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9988337	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M5_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	74	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8242681	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80315259	12A2p6	cell line	sgMsh2	80315259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	45	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.T6059C:p.V2020A,Apc2:NM_001372237:exon15:c.T6146C:p.V2049A,Apc2:NM_001372238:exon15:c.T6149C:p.V2050A,Apc2:NM_001372239:exon15:c.T6074C:p.V2025A,Apc2:NM_001372240:exon15:c.T6188C:p.V2063A,Apc2:NM_001372241:exon15:c.T6185C:p.V2062A"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9794044	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	24	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9379775	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	51	0	0	NA	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.985067	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	62	0	0	NA	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.991749	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	32	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.8619338	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80360535	12A2p6	cell line	sgMsh2	80360535	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.148	38	0	0	NA	exonic	Plk5	synonymous SNV	"Plk5:NM_001347124:exon8:c.C939T:p.G313G,Plk5:NM_183152:exon8:c.C951T:p.G317G"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.636245942	2	0.6408475	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	56	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.717926164	2	5.61E-05	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	198	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.999995	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996484	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	136	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.769513673	2	0.5997792	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80853072	12A2p6	cell line	sgMsh2	80853072	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	124	0	0	NA	exonic	Lsm7	nonsynonymous SNV	"Lsm7:NM_001359148:exon4:c.G201T:p.E67D,Lsm7:NM_001359149:exon4:c.G231T:p.E77D,Lsm7:NM_001359150:exon4:c.G228T:p.E76D,Lsm7:NM_025349:exon4:c.G198T:p.E66D"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	103	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9932378	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	81178079	12A2p6	cell line	sgMsh2	81178079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	exonic	Eef2	nonsynonymous SNV	Eef2:NM_007907:exon3:c.C245A:p.S82Y	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.978612	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	97	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8304031	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	81361426	12A2p6	cell line	sgMsh2	81361426	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	57	0	0	NA	exonic	Mfsd12	frameshift deletion	Mfsd12:NM_028657:exon4:c.752delC:p.L253Wfs*23	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.713627205	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8833557	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	156	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999506	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr10	82226068	12A2p6	cell line	sgMsh2	82226068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	309	0	0	NA	exonic	Zfp938	synonymous SNV	"Zfp938:NM_001105557:exon4:c.C717A:p.S239S,Zfp938:NM_001379437:exon4:c.C603A:p.S201S,Zfp938:NM_001379438:exon5:c.C699A:p.S233S"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	1.27E-08	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr10	82670328	12A2p6	cell line	sgMsh2	82670328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	164	0	0	NA	exonic	Glt8d2	nonsynonymous SNV	Glt8d2:NM_029102:exon3:c.G68A:p.G23E	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999681	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	87581906	12A2p6	cell line	sgMsh2	87581906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	84	0	0	NA	exonic	Pah	nonsynonymous SNV	Pah:NM_008777:exon12:c.A1258G:p.R420G	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9975004	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	88174395	12A2p6	cell line	sgMsh2	88174395	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	224	0	0	NA	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon7:c.G550A:p.A184T,Nup37:NM_028334:exon7:c.G550A:p.A184T"	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.176257322	3	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	88472758	12A2p6	cell line	sgMsh2	88472758	A	-	Deletion	Strelka2;Vardict	2	0.2182	110	0	0	NA	exonic	Sycp3	frameshift deletion	Sycp3:NM_011517:exon8:c.689delA:p.V233Lfs*1	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.938032868	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	107	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992858	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	140	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998819	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	88905051	12A2p6	cell line	sgMsh2	88905051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	261	0	0	NA	exonic	Slc5a8	nonsynonymous SNV	Slc5a8:NM_145423:exon6:c.C827T:p.A276V	10qC1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	207	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999969	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	132	0	0	NA	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.997523	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	100539045	12A2p6	cell line	sgMsh2	100539045	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	205	0	0	NA	exonic	Cep290	synonymous SNV	Cep290:NM_146009:exon32:c.G4152A:p.E1384E	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999966	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr10	100612845	12A2p6	cell line	sgMsh2	100612845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	164	0	0	NA	exonic	1700017N19Rik	nonsynonymous SNV	1700017N19Rik:NM_001081246:exon11:c.G1021T:p.D341Y	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9902432	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	102388462	12A2p6	cell line	sgMsh2	102388462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	359	0	0	NA	exonic	Mgat4c	nonsynonymous SNV	"Mgat4c:NM_026243:exon4:c.A536G:p.Y179C,Mgat4c:NM_001162368:exon6:c.A536G:p.Y179C,Mgat4c:NM_001162369:exon6:c.A536G:p.Y179C,Mgat4c:NM_001205098:exon8:c.A536G:p.Y179C"	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9986712	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	103170645	12A2p6	cell line	sgMsh2	103170645	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	309	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	Lrriq1:NM_001163559:exon16:c.G3618T:p.E1206D	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	1.27E-08	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	106858253	12A2p6	cell line	sgMsh2	106858253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	86	0	0	NA	exonic	Ppfia2	nonsynonymous SNV	"Ppfia2:NM_001359677:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359678:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359679:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359680:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359681:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359682:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359683:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359684:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359685:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359686:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359687:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359688:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359689:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359690:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359691:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359692:exon15:c.C1877T:p.A626V,Ppfia2:NM_001359693:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359694:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359695:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359696:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359697:exon15:c.C1865T:p.A622V,Ppfia2:NM_001359698:exon15:c.C1865T:p.A622V,Ppfia2:NM_001205341:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359672:exon17:c.C2099T:p.A700V,Ppfia2:NM_001359673:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359674:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359675:exon17:c.C2087T:p.A696V,Ppfia2:NM_001359676:exon17:c.C2087T:p.A696V,Ppfia2:NM_177373:exon17:c.C2087T:p.A696V"	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	106952043	12A2p6	cell line	sgMsh2	106952043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	80	0	0	NA	exonic	Acss3	synonymous SNV	Acss3:NM_001142804:exon12:c.A1512G:p.P504P	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9968929	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr10	106965999	12A2p6	cell line	sgMsh2	106965999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	159	0	0	NA	exonic	Acss3	stoploss	Acss3:NM_198636:exon11:c.T1492C:p.X498R	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999581	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	107586751	12A2p6	cell line	sgMsh2	107586751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	240	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon28:c.A4779G:p.E1593E,Ptprq:NM_001370987:exon28:c.A4782G:p.E1594E"	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999995	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	78	0	0	NA	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.752317837	2	6.36E-07	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	111224688	12A2p6	cell line	sgMsh2	111224688	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	364	0	0	NA	exonic	Osbpl8	nonsynonymous SNV	Osbpl8:NM_175489:exon3:c.A59G:p.K20R	10qD1	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.189154199	3	1	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	139	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998753	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	170	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9797024	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	117676081	12A2p6	cell line	sgMsh2	117676081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	107	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon7:c.A929G:p.Q310R	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.7170617	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	117690275	12A2p6	cell line	sgMsh2	117690275	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	195	0	0	NA	exonic	Mdm2	frameshift deletion	"Mdm2:NM_001288586:exon11:c.1258delA:p.R420Efs*13,Mdm2:NM_010786:exon12:c.1405delA:p.R469Efs*13"	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.984461626	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr10	120084913	12A2p6	cell line	sgMsh2	120084913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	256	0	0	NA	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon13:c.A3124G:p.T1042A	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.999954	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	120146474	12A2p6	cell line	sgMsh2	120146474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	184	0	0	NA	exonic	Irak3	nonsynonymous SNV	"Irak3:NM_001359184:exon9:c.A806G:p.Q269R,Irak3:NM_028679:exon9:c.A1082G:p.Q361R"	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.662039696	2	0.9989594	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	92	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9983829	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M5_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	142	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9787417	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	232	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999992	TTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr10	121615116	12A2p6	cell line	sgMsh2	121615116	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	108	0	0	NA	exonic	Xpot	frameshift deletion	"Xpot:NM_001081056:exon6:c.378delT:p.F126Lfs*8,Xpot:NM_001359618:exon6:c.378delT:p.F126Lfs*8"	10qD2	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M5_p20	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	138	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.765214714	2	0.6469998	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	60	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9191461	CCG	synonymous	NA	NA	NA	NA
M5_p20	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	217	0	0	NA	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr10	127444363	12A2p6	cell line	sgMsh2	127444363	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	49	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359243:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359245:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359246:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_027900:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001168292:exon3:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359244:exon4:c.53delA:p.K20Nfs*6"	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	180	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9657245	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	157	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999533	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	81	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9970573	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	128042956	12A2p6	cell line	sgMsh2	128042956	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	18	0	0	NA	exonic	Naca	nonsynonymous SNV	Naca:NM_001113199:exon3:c.C3856A:p.P1286T	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	9.28E-05	CCC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr10	128125327	12A2p6	cell line	sgMsh2	128125327	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	315	0	0	NA	exonic	Baz2a	nonsynonymous SNV	Baz2a:NM_054078:exon26:c.A4909G:p.S1637G	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	9.45E-09	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	225	0	0	NA	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999968	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr10	128519189	12A2p6	cell line	sgMsh2	128519189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	224	0	0	NA	exonic	Esyt1	nonsynonymous SNV	Esyt1:NM_011843:exon14:c.A1468G:p.N490D	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999988	TTG	nonsynonymous	GGGTT	10	GGGTTGGGTT	NA
M5_p20	chr10	128521621	12A2p6	cell line	sgMsh2	128521621	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	269	0	0	NA	exonic	Esyt1	stopgain	Esyt1:NM_011843:exon7:c.G823T:p.G275X	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129321725	12A2p6	cell line	sgMsh2	129321725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	203	0	0	NA	exonic	Olfr780	nonsynonymous SNV	Olfr780:NM_146284:exon1:c.T101C:p.L34P	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999962	CTA	nonsynonymous	ACCT	9	ACCTACCTA	NA
M5_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	212	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999977	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	77	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.97	4.169990295	NA	2	1	1	0.9963425	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M5_p20	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	90	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129842856	12A2p6	cell line	sgMsh2	129842856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	217	0	0	NA	exonic	Olfr812	nonsynonymous SNV	Olfr812:NM_146795:exon1:c.G185A:p.R62Q	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	222	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	305	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	129902524	12A2p6	cell line	sgMsh2	129902524	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.G203A:p.R68H	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	130074983	12A2p6	cell line	sgMsh2	130074983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	577	0	0	NA	exonic	Olfr822	nonsynonymous SNV	Olfr822:NM_146671:exon1:c.A572G:p.Q191R	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	385	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr11	3186096	12A2p6	cell line	sgMsh2	3186096	T	C	SNV	Mutect2;Vardict	2	0.008186	1357	0	0	NA	exonic	Sfi1	nonsynonymous SNV	Sfi1:NM_030207:exon4:c.A235G:p.T79A	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.035191279	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	3360509	12A2p6	cell line	sgMsh2	3360509	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	153	0	0	NA	exonic	Limk2	nonsynonymous SNV	"Limk2:NM_001361623:exon2:c.G131T:p.W44L,Limk2:NM_173053:exon2:c.G131T:p.W44L,Limk2:NM_010718:exon3:c.G194T:p.W65L"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999419	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	3530029	12A2p6	cell line	sgMsh2	3530029	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	exonic	Smtn	nonsynonymous SNV	"Smtn:NM_001284427:exon10:c.A1191T:p.E397D,Smtn:NM_013870:exon10:c.A1191T:p.E397D,Smtn:NM_001159284:exon11:c.A1191T:p.E397D,Smtn:NM_001284428:exon11:c.A1191T:p.E397D,Smtn:NM_001284429:exon11:c.A444T:p.E148D"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9952012	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	107	0	0	NA	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992858	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	198	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.999995	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	4943869	12A2p6	cell line	sgMsh2	4943869	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	124	0	0	NA	exonic	Nefh	nonsynonymous SNV	Nefh:NM_010904:exon3:c.T1184C:p.I395T	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	5062477	12A2p6	cell line	sgMsh2	5062477	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	91	0	0	NA	exonic	Gas2l1	frameshift deletion	"Gas2l1:NM_001190408:exon4:c.776delG:p.G259Afs*9,Gas2l1:NM_030228:exon5:c.776delG:p.G259Afs*9,Gas2l1:NM_144560:exon5:c.776delG:p.G259Afs*9"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.898482445	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	44	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	5281768	12A2p6	cell line	sgMsh2	5281768	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	121	0	0	NA	exonic	Znrf3	nonsynonymous SNV	"Znrf3:NM_001080924:exon8:c.T1744A:p.F582I,Znrf3:NM_001290501:exon9:c.T1456A:p.F486I"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	5799332	12A2p6	cell line	sgMsh2	5799332	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	84	0	0	NA	exonic	Dbnl	synonymous SNV	"Dbnl:NM_001146308:exon12:c.C1164T:p.Y388Y,Dbnl:NM_001146309:exon12:c.C1152T:p.Y384Y,Dbnl:NM_013810:exon12:c.C1155T:p.Y385Y"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.5076881	ACC	synonymous	CAGG	8	CAGGCAGG	NA
M5_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	206	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.6196852	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	118	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	6511565	12A2p6	cell line	sgMsh2	6511565	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	exonic	Myo1g	nonsynonymous SNV	Myo1g:NM_178440:exon15:c.G1885A:p.E629K	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9972131	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	6601350	12A2p6	cell line	sgMsh2	6601350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	34	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1840G:p.S614G	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9630971	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	195	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999941	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	6605651	12A2p6	cell line	sgMsh2	6605651	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	22	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon1:c.C98A:p.A33D	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9313098	GGC	nonsynonymous	G	14	GGGGGGGGGGGGGG	NA
M5_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	185	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999899	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr11	16883544	12A2p6	cell line	sgMsh2	16883544	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	195	0	0	NA	exonic	Egfr	nonsynonymous SNV	"Egfr:NM_007912:exon15:c.A1811C:p.N604T,Egfr:NM_207655:exon15:c.A1811C:p.N604T"	11qA2	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8212225	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	136	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9928414	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	20021442	12A2p6	cell line	sgMsh2	20021442	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	76	0	0	NA	exonic	Spred2	nonsynonymous SNV	Spred2:NM_033523:exon6:c.G1228A:p.A410T	11qA3.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9961382	CGC	nonsynonymous	GCC	8	GCCGCCGC	NA
M5_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	252	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	GCA	synonymous	NA	NA	NA	NA
M5_p20	chr11	21148451	12A2p6	cell line	sgMsh2	21148451	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	240	0	0	NA	exonic	Peli1	synonymous SNV	Peli1:NM_023324:exon7:c.C1185T:p.C395C	11qA3.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999995	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	194	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9997752	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	23367343	12A2p6	cell line	sgMsh2	23367343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	94	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon16:c.A2401G:p.M801V	11qA3.2	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	23516464	12A2p6	cell line	sgMsh2	23516464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	205	0	0	NA	exonic	1700093K21Rik	synonymous SNV	"1700093K21Rik:NM_001110133:exon5:c.T513C:p.A171A,1700093K21Rik:NM_026105:exon5:c.T513C:p.A171A,1700093K21Rik:NM_001370913:exon6:c.T513C:p.A171A"	11qA3.2	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999966	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	228	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.999999	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M5_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	190	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999923	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	345	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	2.65E-09	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	149	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9726605	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	146	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr11	32612696	12A2p6	cell line	sgMsh2	32612696	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	107	0	0	NA	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon14:c.A1511C:p.K504T,Stk10:NM_001359178:exon14:c.A1418C:p.K473T,Stk10:NM_009288:exon14:c.A2105C:p.K702T"	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992858	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	166	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9966977	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	239	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999995	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	123	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	344	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.799606386	2	0.5318369	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	113	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.999485	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	35698444	12A2p6	cell line	sgMsh2	35698444	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	20	0	0	NA	exonic	Slit3	synonymous SNV	Slit3:NM_011412:exon33:c.C3825T:p.S1275S	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9239751	GCC	synonymous	C	5	CCCCC	NA
M5_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	70	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9875507	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	277	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M5_p20	chr11	36024130	12A2p6	cell line	sgMsh2	36024130	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	441	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon26:c.C6483T:p.T2161T,Tenm2:NM_011856:exon27:c.C6576T:p.T2192T"	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9999919	AGG	synonymous	GTCATA	13	GTCATAGTCATAG	NA
M5_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	197	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999947	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr11	36944005	12A2p6	cell line	sgMsh2	36944005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	138	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon1:c.A162G:p.R54R,Tenm2:NM_011856:exon1:c.A162G:p.R54R"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998683	TTC	synonymous	NA	NA	NA	NA
M5_p20	chr11	41912364	12A2p6	cell line	sgMsh2	41912364	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	155	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_177408:exon9:c.C1353A:p.A451A,Gabrg2:NM_008073:exon10:c.C1377A:p.A459A,Gabrg2:NM_001362655:exon11:c.C1323A:p.A441A,Gabrg2:NM_001362656:exon11:c.C1320A:p.A440A"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	196	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9999225	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	42317608	12A2p6	cell line	sgMsh2	42317608	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	194	0	0	NA	exonic	Gabra6	frameshift deletion	"Gabra6:NM_001099641:exon4:c.396delC:p.N133Tfs*5,Gabra6:NM_001359049:exon4:c.393delC:p.N132Tfs*5,Gabra6:NM_008068:exon4:c.366delC:p.N123Tfs*5"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9878818	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	316	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8316604	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	288	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9999026	AAC	synonymous	AACA	8	AACAAACA	NA
M5_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	74	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-45005041	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.7632979	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	117	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995859	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	433	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	1.46E-08	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	401	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9999875	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	87	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.238	28	0	0	NA	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9495278	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	230	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999991	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	50853382	12A2p6	cell line	sgMsh2	50853382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	134	0	0	NA	exonic	Grm6	nonsynonymous SNV	Grm6:NM_173372:exon3:c.T679C:p.F227L	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998361	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	73	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	175	0	0	NA	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9993059	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	89	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9980959	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	52037476	12A2p6	cell line	sgMsh2	52037476	T	-	Deletion	Mutect2;Vardict	2	0.268	219	0	0	NA	exonic	Cdkl3	frameshift deletion	Cdkl3:NM_153785:exon13:c.1771delT:p.S594Pfs*8	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M5_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	137	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.975863708	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr11	53463343	12A2p6	cell line	sgMsh2	53463343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	57	0	0	NA	exonic	Shroom1	nonsynonymous SNV	"Shroom1:NM_001290789:exon2:c.A89G:p.D30G,Shroom1:NM_027917:exon2:c.A89G:p.D30G"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.8968929	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	79	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	116	0	0	NA	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995627	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	264	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.8296991	1	0.9288204	AAC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	54	0	0	NA	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9872925	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	55284313	12A2p6	cell line	sgMsh2	55284313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	212	0	0	NA	exonic	Fat2	nonsynonymous SNV	Fat2:NM_001029988:exon9:c.T5573C:p.V1858A	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999977	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	82	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9972131	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	137	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9975242	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M5_p20	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.269	35	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9649875	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	621	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	1.00E-09	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.082	615	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.352514643	3	1	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M5_p20	chr11	58937150	12A2p6	cell line	sgMsh2	58937150	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	97	0	0	NA	exonic	Rnf187	nonsynonymous SNV	Rnf187:NM_022423:exon2:c.C473A:p.A158D	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9942301	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	59002999	12A2p6	cell line	sgMsh2	59002999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon89:c.C20241A:p.S6747S	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr11	59007711	12A2p6	cell line	sgMsh2	59007711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.29	95	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon85:c.T19723C:p.F6575L	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986266	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	59062816	12A2p6	cell line	sgMsh2	59062816	A	T	SNV	Mutect2;Vardict	2	0.025	227	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon42:c.T11385A:p.P3795P,Obscn:NM_199152:exon44:c.T12012A:p.P4004P"	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.107473977	3	1	CAG	synonymous	CTCCA	11	CTCCACTCCAC	NA
M5_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.136	174	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.584658433	2	0.9999655	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.166	37	0	0	NA	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.713627205	1	0.000610505	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	119	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	61749013	12A2p6	cell line	sgMsh2	61749013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	411	0	0	NA	exonic	Prpsap2	nonsynonymous SNV	"Prpsap2:NM_001164244:exon4:c.T53C:p.I18T,Prpsap2:NM_001164242:exon5:c.T311C:p.I104T,Prpsap2:NM_001164243:exon5:c.T53C:p.I18T,Prpsap2:NM_001364088:exon5:c.T74C:p.I25T,Prpsap2:NM_001364087:exon6:c.T311C:p.I104T,Prpsap2:NM_001364090:exon6:c.T53C:p.I18T,Prpsap2:NM_144806:exon6:c.T311C:p.I104T,Prpsap2:NM_001364086:exon7:c.T311C:p.I104T"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	1.10E-09	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	62219339	12A2p6	cell line	sgMsh2	62219339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	155	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001029936:exon13:c.T2902C:p.Y968H,Specc1:NM_001281818:exon15:c.T3142C:p.Y1048H"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9237673	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	139	0	0	NA	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.743719919	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5_p20	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	171	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9752728	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.208	466	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9999955	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	62582966	12A2p6	cell line	sgMsh2	62582966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	88	0	0	NA	exonic	Trpv2	nonsynonymous SNV	"Trpv2:NM_001382489:exon4:c.A446G:p.N149S,Trpv2:NM_001382491:exon4:c.A446G:p.N149S,Trpv2:NM_001382492:exon4:c.A446G:p.N149S,Trpv2:NM_011706:exon5:c.A446G:p.N149S,Trpv2:NM_001382490:exon6:c.A446G:p.N149S"	11qB2	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	65003428	12A2p6	cell line	sgMsh2	65003428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	39	0	0	NA	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_001099288:exon20:c.C2310A:p.P770P	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	2	1	1	0.9716563	AGG	synonymous	TGGA	8	TGGATGGA	NA
M5_p20	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	117	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995859	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.760915755	2	0.7346571	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	67087307	12A2p6	cell line	sgMsh2	67087307	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	154	0	0	NA	exonic	Myh3	nonsynonymous SNV	Myh3:NM_001099635:exon13:c.T1204G:p.F402V	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.601854269	2	0.9997351	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	336	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	3.69E-09	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	137	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998609	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	333	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.5849402	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	212	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8881118	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	67259361	12A2p6	cell line	sgMsh2	67259361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	129	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon39:c.C5643A:p.A1881A	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997848	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr11	67329005	12A2p6	cell line	sgMsh2	67329005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	189	0	0	NA	exonic	Myh13	nonsynonymous SNV	Myh13:NM_001081250:exon2:c.A260G:p.K87R	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999918	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9716563	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	404	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	4.27E-08	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69348933	12A2p6	cell line	sgMsh2	69348933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	88	0	0	NA	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon32:c.A5068G:p.R1690G	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9482608	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69437293	12A2p6	cell line	sgMsh2	69437293	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	52	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon65:c.C10003A:p.L3335M	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	1	1	0.9858485	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69478795	12A2p6	cell line	sgMsh2	69478795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	158	0	0	NA	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon30:c.A4854G:p.A1618A	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9997522	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	58	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-45883360-69579350	4	2	2	0.97	4.169990295	NA	2	1	1	0.9897579	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.941472036	1	0.9953319	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69760249	12A2p6	cell line	sgMsh2	69760249	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	132	0	0	NA	exonic	Slc35g3	synonymous SNV	Slc35g3:NM_019871:exon2:c.C975A:p.L325L	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.78241055	1	0.537435	AGA	synonymous	NA	NA	NA	NA
M5_p20	chr11	69776029	12A2p6	cell line	sgMsh2	69776029	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	47	0	0	NA	exonic	Zbtb4	synonymous SNV	"Zbtb4:NM_001363178:exon3:c.C159A:p.P53P,Zbtb4:NM_029348:exon3:c.C159A:p.P53P"	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.911379322	1	0.9396022	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr11	69821960	12A2p6	cell line	sgMsh2	69821960	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	62	0	0	NA	exonic	Spem1	synonymous SNV	Spem1:NM_028855:exon1:c.C141A:p.T47T	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.991749	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr11	69883732	12A2p6	cell line	sgMsh2	69883732	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	65	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon18:c.G1703A:p.S568N	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9929857	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	43	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.477184456	2	0.8245389	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	69966001	12A2p6	cell line	sgMsh2	69966001	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	47	0	0	NA	exonic	Cldn7	synonymous SNV	"Cldn7:NM_016887:exon1:c.T75G:p.T25T,Cldn7:NM_001193619:exon2:c.T75G:p.T25T"	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.55456572	2	0.09842192	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	70	0	0	NA	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.994651	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	70974987	12A2p6	cell line	sgMsh2	70974987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	159	0	0	NA	exonic	Rpain	nonsynonymous SNV	Rpain:NM_027186:exon6:c.T577C:p.F193L	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.791008468	1	0.5733125	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	63	0	0	NA	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9921835	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M5_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	175	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9999825	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	79	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9967192	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	72831554	12A2p6	cell line	sgMsh2	72831554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon8:c.C1406T:p.T469I	11qB4	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9961382	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	221	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9999986	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	37	0	0	NA	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9684922	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	286	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.997358503	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	95	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.859791813	1	0.9350541	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.153	40	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.657740737	2	0.6075507	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	132	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9998173	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	80	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9968929	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	76456674	12A2p6	cell line	sgMsh2	76456674	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	127	0	0	NA	exonic	Abr	nonsynonymous SNV	"Abr:NM_001291186:exon6:c.A577C:p.M193L,Abr:NM_001346670:exon10:c.A1120C:p.M374L,Abr:NM_198018:exon10:c.A1267C:p.M423L,Abr:NM_198894:exon11:c.A1093C:p.M365L,Abr:NM_198895:exon11:c.A1231C:p.M411L"	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.588957392	2	0.9990722	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	77846925	12A2p6	cell line	sgMsh2	77846925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	117	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon30:c.A3839G:p.Y1280C,Myo18a:NM_011586:exon31:c.A4844G:p.Y1615C,Myo18a:NM_001291212:exon32:c.A4880G:p.Y1627C,Myo18a:NM_001291213:exon32:c.A4988G:p.Y1663C,Myo18a:NM_001291215:exon33:c.A3905G:p.Y1302C"	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9995859	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	77972976	12A2p6	cell line	sgMsh2	77972976	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	80	0	0	NA	exonic	Sez6	synonymous SNV	"Sez6:NM_001291225:exon6:c.C1360T:p.L454L,Sez6:NM_021286:exon6:c.C1360T:p.L454L"	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.945770995	1	0.9889422	CCT	synonymous	CTGCAC	12	CTGCACCTGCAC	NA
M5_p20	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	66	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9933556	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	135	0	0	NA	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9998448	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	69	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.571761556	2	0.9676784	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	79386676	12A2p6	cell line	sgMsh2	79386676	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.247	111	0	0	NA	exonic	Nf1	frameshift insertion	Nf1:NM_010897:exon3:c.227dupA:p.N78Kfs*28	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	NA	NA	TGA	frameshift	A	5	AAAAA	1
M5_p20	chr11	79535822	12A2p6	cell line	sgMsh2	79535822	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	135	0	0	NA	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon37:c.G5061T:p.W1687C	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9998448	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	93	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	0.593256351	2	0.9902487	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	200	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.97	4.169990295	NA	1	1	1	0.9999955	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	83520586	12A2p6	cell line	sgMsh2	83520586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	204	0	0	NA	exonic	Heatr9	nonsynonymous SNV	Heatr9:NM_001045543:exon2:c.A122G:p.K41R	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.343916725	3	0.9999939	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	279	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	356	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	1.90E-09	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	313	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.730823041	2	0.9982186	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	188	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9995509	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	237	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999994	CAA	synonymous	CCT	8	CCTCCTCC	NA
M5_p20	chr11	86329219	12A2p6	cell line	sgMsh2	86329219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	167	0	0	NA	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon6:c.A958G:p.M320V	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999729	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	102	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990621	CCA	synonymous	NA	NA	NA	NA
M5_p20	chr11	86548864	12A2p6	cell line	sgMsh2	86548864	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	231	0	0	NA	exonic	Tubd1	nonsynonymous SNV	"Tubd1:NM_001199045:exon2:c.G34T:p.G12C,Tubd1:NM_001199046:exon2:c.G34T:p.G12C,Tubd1:NM_001199047:exon2:c.G34T:p.G12C,Tubd1:NM_019756:exon2:c.G34T:p.G12C"	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.786709509	2	0.622592	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	214	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999979	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	63	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9921835	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	117	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9758563	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	42	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9758313	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	175	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999825	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	90276799	12A2p6	cell line	sgMsh2	90276799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	146	0	0	NA	exonic	Mmd	nonsynonymous SNV	Mmd:NM_026178:exon7:c.T653C:p.V218A	11qC	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	90535521	12A2p6	cell line	sgMsh2	90535521	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	68	0	0	NA	exonic	Stxbp4	frameshift deletion	Stxbp4:NM_011505:exon16:c.1460delA:p.K487Rfs*35	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.825400141	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr11	94238328	12A2p6	cell line	sgMsh2	94238328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	146	0	0	NA	exonic	Wfikkn2	nonsynonymous SNV	Wfikkn2:NM_181819:exon2:c.G986A:p.S329N	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	124	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	91	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9982924	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	94647955	12A2p6	cell line	sgMsh2	94647955	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	170	0	0	NA	exonic	Eme1	synonymous SNV	"Eme1:NM_177752:exon5:c.G1098A:p.E366E,Eme1:NM_001379688:exon6:c.G1155A:p.E385E"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999674	TCT	synonymous	NA	NA	NA	NA
M5_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	88	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	94945535	12A2p6	cell line	sgMsh2	94945535	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	159	0	0	NA	exonic	Col1a1	synonymous SNV	Col1a1:NM_007742:exon31:c.A2031G:p.Q677Q	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9805111	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	128	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9996529	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	170	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.999977	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	96934585	12A2p6	cell line	sgMsh2	96934585	A	-	Deletion	Strelka2;Vardict	2	0.3235	34	0	0	NA	exonic	Prr15l	frameshift deletion	Prr15l:NM_146026:exon3:c.40delA:p.K16Nfs*92	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M5_p20	chr11	96961294	12A2p6	cell line	sgMsh2	96961294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	64	0	0	NA	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon3:c.T800C:p.V267A,Sp2:NM_001363226:exon3:c.T785C:p.V262A,Sp2:NM_030220:exon3:c.T803C:p.V268A,Sp2:NM_001363225:exon4:c.T785C:p.V262A"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9925954	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97114689	12A2p6	cell line	sgMsh2	97114689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	68	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon1:c.A449G:p.N150S	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9940382	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97334465	12A2p6	cell line	sgMsh2	97334465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	87	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon12:c.A6863G:p.Y2288C	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97351746	12A2p6	cell line	sgMsh2	97351746	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	41	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon2:c.G271T:p.V91F	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.778111591	1	0.7240641	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	197	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999921	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97806853	12A2p6	cell line	sgMsh2	97806853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.056	381	0	0	NA	exonic	Lasp1	nonsynonymous SNV	Lasp1:NM_010688:exon2:c.A98G:p.E33G	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.240741708	3	1	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	197	0	0	NA	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999947	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9974714	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	157	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9987319	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	175	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999825	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr11	98995876	12A2p6	cell line	sgMsh2	98995876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	217	0	0	NA	exonic	Top2a	synonymous SNV	Top2a:NM_011623:exon31:c.T4050C:p.T1350T	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999982	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	99003065	12A2p6	cell line	sgMsh2	99003065	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	97	0	0	NA	exonic	Top2a	nonsynonymous SNV	Top2a:NM_011623:exon24:c.T3002G:p.L1001R	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr11	99949306	12A2p6	cell line	sgMsh2	99949306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	422	0	0	NA	exonic	Krtap9-5	nonsynonymous SNV	Krtap9-5:NM_001085527:exon1:c.A832G:p.T278A	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	1.02E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	99985643	12A2p6	cell line	sgMsh2	99985643	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	123	0	0	NA	exonic	Krtap16-1	nonsynonymous SNV	Krtap16-1:NM_001256057:exon1:c.G934C:p.V312L	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.09488149	ACC	nonsynonymous	CA	9	CACACACAC	NA
M5_p20	chr11	100134462	12A2p6	cell line	sgMsh2	100134462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	161	0	0	NA	exonic	Krt15	nonsynonymous SNV	Krt15:NM_008469:exon2:c.A548G:p.D183G	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.623349065	2	0.9995319	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	100336894	12A2p6	cell line	sgMsh2	100336894	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	64	0	0	NA	exonic	Gast	nonsynonymous SNV	Gast:NM_010257:exon3:c.C301A:p.Q101K	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9925954	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	100592887	12A2p6	cell line	sgMsh2	100592887	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	161	0	0	NA	exonic	Dnajc7	synonymous SNV	"Dnajc7:NM_001378962:exon6:c.T519C:p.L173L,Dnajc7:NM_019795:exon6:c.T567C:p.L189L"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999624	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr11	101020563	12A2p6	cell line	sgMsh2	101020563	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	113	0	0	NA	exonic	Atp6v0a1	nonsynonymous SNV	"Atp6v0a1:NM_001243049:exon3:c.A107C:p.D36A,Atp6v0a1:NM_001362639:exon3:c.A107C:p.D36A,Atp6v0a1:NM_001243050:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001243051:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362636:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362637:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362638:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362640:exon4:c.A287C:p.D96A,Atp6v0a1:NM_001362641:exon4:c.A287C:p.D96A,Atp6v0a1:NM_016920:exon4:c.A287C:p.D96A"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.735122	2	0.7759896	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	113	0	0	NA	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9321155	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101156781	12A2p6	cell line	sgMsh2	101156781	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	141	0	0	NA	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon3:c.C191T:p.A64V	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9992567	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101166508	12A2p6	cell line	sgMsh2	101166508	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	24	0	0	NA	exonic	Plekhh3	nonsynonymous SNV	"Plekhh3:NM_001346769:exon7:c.C922A:p.L308M,Plekhh3:NM_146030:exon7:c.C922A:p.L308M"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9379775	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101261018	12A2p6	cell line	sgMsh2	101261018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	23	0	0	NA	exonic	Wnk4	nonsynonymous SNV	Wnk4:NM_175638:exon1:c.C347T:p.A116V	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9347234	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101325361	12A2p6	cell line	sgMsh2	101325361	A	G	SNV	Mutect2;Vardict	2	0.064	170	0	0	NA	exonic	Aoc2	nonsynonymous SNV	Aoc2:NM_178932:exon1:c.A269G:p.N90S	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.27513338	3	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	127	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	54	0	0	NA	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9216635	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	102204900	12A2p6	cell line	sgMsh2	102204900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	80	0	0	NA	exonic	Hdac5	nonsynonymous SNV	"Hdac5:NM_001077696:exon10:c.T1072C:p.S358P,Hdac5:NM_001284250:exon10:c.T1069C:p.S357P,Hdac5:NM_010412:exon10:c.T1069C:p.S357P,Hdac5:NM_001284249:exon11:c.T946C:p.S316P,Hdac5:NM_001361596:exon11:c.T946C:p.S316P,Hdac5:NM_001284248:exon12:c.T1126C:p.S376P"	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.524473006	2	0.9790741	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	102361382	12A2p6	cell line	sgMsh2	102361382	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	37	0	0	NA	exonic	Slc4a1	nonsynonymous SNV	Slc4a1:NM_011403:exon2:c.G14A:p.R5Q	11qD	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9684922	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	90	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	118	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	CCC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	59	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9902963	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	102	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9952374	TTC	synonymous	NA	NA	NA	NA
M5_p20	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	70	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.994651	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	105973467	12A2p6	cell line	sgMsh2	105973467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	118	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon9:c.A1433G:p.Q478R,Ace:NM_207624:exon9:c.A1433G:p.Q478R"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	157	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999533	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	106248056	12A2p6	cell line	sgMsh2	106248056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	65	0	0	NA	exonic	Ddx42	nonsynonymous SNV	"Ddx42:NM_001361642:exon11:c.A1894G:p.K632E,Ddx42:NM_001361640:exon13:c.A2191G:p.K731E,Ddx42:NM_001361644:exon13:c.A1888G:p.K630E,Ddx42:NM_001361643:exon17:c.A1888G:p.K630E,Ddx42:NM_028074:exon18:c.A2680G:p.K894E"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9929857	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	320	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.5949904	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	125	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997323	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	39	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9716563	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M5_p20	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	107	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.791008468	1	0.6590452	ATA	synonymous	ATAA	8	ATAAATAA	NA
M5_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	143	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.999668	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	108498317	12A2p6	cell line	sgMsh2	108498317	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	253	0	0	NA	exonic	Cep112	nonsynonymous SNV	"Cep112:NM_001373899:exon9:c.C839T:p.A280V,Cep112:NM_029606:exon10:c.C839T:p.A280V"	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9999299	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	110154560	12A2p6	cell line	sgMsh2	110154560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	0	0	NA	exonic	Abca9	nonsynonymous SNV	Abca9:NM_147220:exon8:c.A946G:p.T316A	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	110158302	12A2p6	cell line	sgMsh2	110158302	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.264	87	0	0	NA	exonic	Abca9	frameshift insertion	Abca9:NM_147220:exon6:c.678dupT:p.I227Yfs*139	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATA	frameshift	A	5	AAAAA	1
M5_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.288	331	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	4.53E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9925954	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	113657504	12A2p6	cell line	sgMsh2	113657504	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	67	0	0	NA	exonic	Cog1	nonsynonymous SNV	Cog1:NM_013581:exon9:c.T2344C:p.Y782H	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.666338655	2	0.8205485	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	93	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8120359	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr11	114890404	12A2p6	cell line	sgMsh2	114890404	-	TGCTGC	Insertion	Mutect2;Vardict	2	0.112	65	0	0	NA	exonic	Cd300a	nonframeshift insertion	"Cd300a:NM_001347654:exon1:c.40_41insTGCTGC:p.L19_F20insLL,Cd300a:NM_001359812:exon1:c.40_41insTGCTGC:p.L19_F20insLL,Cd300a:NM_170758:exon1:c.40_41insTGCTGC:p.L19_F20insLL"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.481483415	NA	NA	GTT	inframe	TGC	16	TGCTGCTGCTGCTGCT	6
M5_p20	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	470	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	115243868	12A2p6	cell line	sgMsh2	115243868	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	121	0	0	NA	exonic	Tmem104	nonsynonymous SNV	Tmem104:NM_001033393:exon10:c.T1229G:p.L410R	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	115318437	12A2p6	cell line	sgMsh2	115318437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	68	0	0	NA	exonic	Ush1g	frameshift deletion	Ush1g:NM_176847:exon2:c.930delC:p.G311Afs*11	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.907080363	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	133	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.999827	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	60	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9908067	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	179	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.769513673	2	0.7265967	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116080661	12A2p6	cell line	sgMsh2	116080661	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	95	0	0	NA	exonic	Wbp2	frameshift deletion	Wbp2:NM_016852:exon5:c.417delC:p.N140Mfs*45	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.980162667	NA	NA	TGG	frameshift	NA	NA	NA	-1
M5_p20	chr11	116106258	12A2p6	cell line	sgMsh2	116106258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	83	0	0	NA	exonic	Trim47	nonsynonymous SNV	"Trim47:NM_001205081:exon6:c.T1672C:p.Y558H,Trim47:NM_172570:exon6:c.T1669C:p.Y557H"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9973606	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	75	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9416736	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	282	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	33	0	0	NA	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9611086	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr11	116595789	12A2p6	cell line	sgMsh2	116595789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	83	0	0	NA	exonic	Aanat	synonymous SNV	Aanat:NM_009591:exon2:c.G153A:p.R51R	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	2	1	1	0.9973606	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	131	0	0	NA	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9996486	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116766260	12A2p6	cell line	sgMsh2	116766260	T	C	SNV	Mutect2;MuSe;Vardict	3	0.061	520	0	0	NA	exonic	St6galnac1	nonsynonymous SNV	St6galnac1:NM_011371:exon7:c.A1288G:p.R430G	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.262236503	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	116873346	12A2p6	cell line	sgMsh2	116873346	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	131	0	0	NA	exonic	Mfsd11	synonymous SNV	"Mfsd11:NM_001361586:exon12:c.C525T:p.S175S,Mfsd11:NM_001361587:exon12:c.C591T:p.S197S,Mfsd11:NM_178620:exon12:c.C1152T:p.S384S,Mfsd11:NM_001361585:exon13:c.C591T:p.S197S"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	GCG	synonymous	NA	NA	NA	NA
M5_p20	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	73	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	25	0	0	NA	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9410786	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	99	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.855492854	1	0.9305243	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	118119615	12A2p6	cell line	sgMsh2	118119615	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	71	0	0	NA	exonic	Dnah17	synonymous SNV	Dnah17:NM_001167746:exon11:c.G1761A:p.K587K	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.773812632	1	0.6344388	ACT	synonymous	NA	NA	NA	NA
M5_p20	chr11	118393201	12A2p6	cell line	sgMsh2	118393201	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	107	0	0	NA	exonic	Lgals3bp	synonymous SNV	Lgals3bp:NM_011150:exon6:c.C1551A:p.L517L	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9868237	AGA	synonymous	NA	NA	NA	NA
M5_p20	chr11	119029064	12A2p6	cell line	sgMsh2	119029064	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	207	0	0	NA	exonic	Cbx2	nonsynonymous SNV	Cbx2:NM_007623:exon5:c.G1454T:p.S485I	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9980702	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	49	0	0	NA	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9598273	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	119350989	12A2p6	cell line	sgMsh2	119350989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	155	0	0	NA	exonic	Sgsh	nonsynonymous SNV	Sgsh:NM_018822:exon3:c.A290G:p.H97R	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	119436427	12A2p6	cell line	sgMsh2	119436427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	122	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.C5242A:p.L1748I	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.9894605	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.14	91	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.601854269	2	0.9863135	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.231	14	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.8946092	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	119507364	12A2p6	cell line	sgMsh2	119507364	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.176	22	0	0	NA	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.C705T:p.T235T,Endov:NM_001164636:exon9:c.C954T:p.T318T"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.756616796	1	0.7358359	CCG	synonymous	NA	NA	NA	NA
M5_p20	chr11	120001098	12A2p6	cell line	sgMsh2	120001098	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	30	0	0	NA	exonic	Baiap2	synonymous SNV	"Baiap2:NM_001037754:exon14:c.A1443C:p.T481T,Baiap2:NM_130862:exon14:c.A1563C:p.T521T"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.09771321	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	120065989	12A2p6	cell line	sgMsh2	120065989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	33	0	0	NA	exonic	Cep131	nonsynonymous SNV	Cep131:NM_009734:exon22:c.A2624G:p.E875G	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.8983491	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	259	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.773812632	1	0.6883472	TAC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	217	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999982	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	124	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	85	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9951887	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	85	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.550266761	2	0.9901679	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	120964979	12A2p6	cell line	sgMsh2	120964979	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	132	0	0	NA	exonic	Csnk1d	stoploss	Csnk1d:NM_027874:exon9:c.A1229C:p.X410S	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9994484	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr11	121117141	12A2p6	cell line	sgMsh2	121117141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	102	0	0	NA	exonic	Tex19.2	synonymous SNV	Tex19.2:NM_027622:exon3:c.T480G:p.S160S	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.833998059	1	0.8792315	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	191	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9954618	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	161	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M5_p20	chr12	4201333	12A2p6	cell line	sgMsh2	4201333	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	45	0	0	NA	exonic	Adcy3	nonsynonymous SNV	"Adcy3:NM_138305:exon10:c.A1954T:p.I652F,Adcy3:NM_001159536:exon11:c.A1954T:p.I652F,Adcy3:NM_001159537:exon11:c.A1954T:p.I652F"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.778111591	1	0.7153775	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.846894936	1	0.9289871	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	165	0	0	NA	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.64484386	2	0.9989395	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	220	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.855492854	1	0.9828096	GTT	synonymous	TTA	8	TTATTATT	NA
M5_p20	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	204	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.760915755	2	0.8613989	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	146	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.885585568	1	0.9884812	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M5_p20	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	171	0	0	NA	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.610452187	2	0.9998605	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	154	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.984461626	1	0.9998886	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr12	8749702	12A2p6	cell line	sgMsh2	8749702	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	260	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160222:exon20:c.A2940G:p.P980P,Pum2:NM_001310519:exon20:c.A2925G:p.P975P,Pum2:NM_001160219:exon21:c.A3183G:p.P1061P,Pum2:NM_001160220:exon21:c.A3177G:p.P1059P,Pum2:NM_001160221:exon21:c.A3177G:p.P1059P,Pum2:NM_030723:exon21:c.A3183G:p.P1061P"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.292329217	3	1.10E-09	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	66	0	0	NA	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.748018878	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5_p20	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	296	0	0	NA	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.485782375	2	0.9884378	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr12	11289146	12A2p6	cell line	sgMsh2	11289146	-	A	Insertion	Mutect2;Vardict	2	0.201	53	0	0	NA	exonic	Smc6	frameshift insertion	"Smc6:NM_001324476:exon10:c.389dupA:p.Y133Vfs*6,Smc6:NM_025695:exon11:c.983dupA:p.Y331Vfs*6"	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.864090772	NA	NA	AGA	frameshift	A	5	AAAAA	1
M5_p20	chr12	13231462	12A2p6	cell line	sgMsh2	13231462	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	308	0	0	NA	exonic	Ddx1	nonsynonymous SNV	Ddx1:NM_134040:exon15:c.C1099A:p.L367M	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.700730328	2	0.9998682	AGG	nonsynonymous	CCAGGA	12	CCAGGACCAGGA	NA
M5_p20	chr12	13374809	12A2p6	cell line	sgMsh2	13374809	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	161	0	0	NA	exonic	Nbas	synonymous SNV	Nbas:NM_027706:exon26:c.C3048T:p.C1016C	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.253638585	3	4.39E-08	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	204	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.842595977	1	0.9560376	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	16824617	12A2p6	cell line	sgMsh2	16824617	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	254	0	0	NA	exonic	E2f6	synonymous SNV	E2f6:NM_033270:exon6:c.A699T:p.V233V	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.631946983	2	0.9999953	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr12	17278908	12A2p6	cell line	sgMsh2	17278908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	138	0	0	NA	exonic	Pdia6	synonymous SNV	Pdia6:NM_027959:exon7:c.T657C:p.A219A	12qA1.1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.756616796	2	0.72217	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	480	0	0	NA	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.636245942	2	1.05E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr12	24581657	12A2p6	cell line	sgMsh2	24581657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	211	0	0	NA	exonic	Grhl1	nonsynonymous SNV	"Grhl1:NM_145890:exon2:c.A362G:p.N121S,Grhl1:NM_001161406:exon4:c.A608G:p.N203S"	12qA1.3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.606153228	2	0.9999904	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	314	0	0	NA	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.623349065	2	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	28594759	12A2p6	cell line	sgMsh2	28594759	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	301	0	0	NA	exonic	Colec11	synonymous SNV	"Colec11:NM_001313978:exon7:c.T735C:p.D245D,Colec11:NM_027866:exon7:c.T717C:p.D239D"	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.69213241	2	0.9999222	CAT	synonymous	TCC	8	TCCTCCTC	NA
M5_p20	chr12	28746451	12A2p6	cell line	sgMsh2	28746451	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	209	0	0	NA	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon2:c.A1081T:p.S361C,Trappc12:NM_001161411:exon2:c.A1081T:p.S361C,Trappc12:NM_001377005:exon2:c.A1081T:p.S361C,Trappc12:NM_001377006:exon2:c.A1081T:p.S361C,Trappc12:NM_001377007:exon2:c.A1081T:p.S361C,Trappc12:NM_178811:exon2:c.A1081T:p.S361C"	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.760915755	2	0.870595	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	29987228	12A2p6	cell line	sgMsh2	29987228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	274	0	0	NA	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon9:c.C1004T:p.S335F	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.563163638	2	0.9999998	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	31305879	12A2p6	cell line	sgMsh2	31305879	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	284	0	0	NA	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon21:c.C2967A:p.A989A	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.498679252	2	0.9981824	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	197	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	265	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.6365482	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	461	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.709328246	2	0.9999975	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	338	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.726524082	2	0.9993732	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	33958432	12A2p6	cell line	sgMsh2	33958432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	68	0	0	NA	exonic	Twist1	nonsynonymous SNV	Twist1:NM_011658:exon1:c.C455T:p.T152I	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.649142819	2	0.8706884	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	300	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.490081334	2	0.9944094	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	38835204	12A2p6	cell line	sgMsh2	38835204	G	A	SNV	Mutect2;MuSe;Vardict	3	0.107	243	0	0	NA	exonic	Etv1	synonymous SNV	"Etv1:NM_001163154:exon5:c.G570A:p.E190E,Etv1:NM_001347379:exon7:c.G636A:p.E212E,Etv1:NM_007960:exon8:c.G690A:p.E230E"	12qA3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.45998862	2	0.6388655	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr12	40725734	12A2p6	cell line	sgMsh2	40725734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	199	0	0	NA	exonic	Dock4	nonsynonymous SNV	Dock4:NM_172803:exon17:c.A1675G:p.T559A	12qB1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.730823041	2	0.9709994	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	182	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.78241055	2	0.5808442	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	211	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9871538	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	231	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.593256351	2	0.9999988	CTG	synonymous	ACCT	8	ACCTACCT	NA
M5_p20	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	185	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.748018878	2	0.09724062	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	283	0	0	NA	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9981736	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	188	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9762259	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M5_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	74	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	1	0.995695	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	53025731	12A2p6	cell line	sgMsh2	53025731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	238	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon9:c.T2881C:p.F961L	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.606153228	2	0.9999982	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	54065900	12A2p6	cell line	sgMsh2	54065900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	225	0	0	NA	exonic	Npas3	nonsynonymous SNV	"Npas3:NM_001370960:exon10:c.A1429G:p.T477A,Npas3:NM_001370963:exon10:c.A1423G:p.T475A,Npas3:NM_001370961:exon11:c.A1519G:p.T507A,Npas3:NM_001370962:exon11:c.A1513G:p.T505A,Npas3:NM_013780:exon11:c.A1513G:p.T505A,Npas3:NM_001370964:exon12:c.A1564G:p.T522A"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.769513673	2	0.8306541	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	228	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M5_p20	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	400	0	0	NA	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.773812632	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M5_p20	chr12	55257491	12A2p6	cell line	sgMsh2	55257491	G	-	Deletion	Mutect2;Vardict	2	0.117	394	0	0	NA	exonic	Srp54b;Srp54c	frameshift deletion	"Srp54b:NM_001100109:exon14:c.1223delG:p.G409Dfs*12,Srp54c:NM_001100110:exon14:c.1223delG:p.G409Dfs*12,Srp54c:NM_001377038:exon14:c.1223delG:p.G409Dfs*12"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.502978211	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5_p20	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	237	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.593256351	2	0.9999992	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	58	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr12	61840162	12A2p6	cell line	sgMsh2	61840162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	202	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.T735C:p.N245N,Lrfn5:NM_178714:exon3:c.T735C:p.N245N"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.739420959	2	0.955797	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	269	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.700730328	2	0.999512	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	314	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.859791813	1	0.9962077	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr12	64967249	12A2p6	cell line	sgMsh2	64967249	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	273	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.G1273A:p.G425R,Togaram1:NM_177805:exon1:c.G1273A:p.G425R"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.859791813	1	0.9934864	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	372	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.773812632	2	0.9559685	CAA	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	173	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5_p20	chr12	65075798	12A2p6	cell line	sgMsh2	65075798	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	38	0	0	NA	exonic	Fancm	synonymous SNV	Fancm:NM_178912:exon1:c.C93T:p.P31P	12qC1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	1	0.9701148	CCG	synonymous	NA	NA	NA	NA
M5_p20	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	244	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.816802223	1	0.8255092	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	69183033	12A2p6	cell line	sgMsh2	69183033	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	344	0	0	NA	exonic	Rpl36al	nonsynonymous SNV	Rpl36al:NM_025589:exon2:c.C104T:p.A35V	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.799606386	2	0.5318369	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	461	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.825400141	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	127	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.786709509	1	0.5886553	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	345	0	0	NA	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.78241055	2	0.8674789	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	307	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.64484386	2	0.9999991	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr12	71317133	12A2p6	cell line	sgMsh2	71317133	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	443	0	0	NA	exonic	Dact1	synonymous SNV	Dact1:NM_001190466:exon4:c.C687A:p.P229P	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.851193895	1	0.9978922	CCT	synonymous	C	5	CCCCC	NA
M5_p20	chr12	72506414	12A2p6	cell line	sgMsh2	72506414	A	-	Deletion	Strelka2;Vardict	2	0.1659	223	0	0	NA	exonic	Lrrc9	frameshift deletion	Lrrc9:NM_001142728:exon30:c.4089delA:p.S1366Vfs*2	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.713197309	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	308	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.6041976	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M5_p20	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	373	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.5536051	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	74897856	12A2p6	cell line	sgMsh2	74897856	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	138	0	0	NA	exonic	Kcnh5	nonsynonymous SNV	Kcnh5:NM_172805:exon11:c.T2618G:p.L873R	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.584658433	2	0.9996115	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	260	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.6402371	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	502	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.674936573	2	5.32E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	75966836	12A2p6	cell line	sgMsh2	75966836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	205	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon48:c.T8800C:p.S2934P	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.748018878	2	0.9322203	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	182	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.756616796	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	214	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.846894936	1	0.9686995	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	69	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.812503264	1	0.7960054	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	164	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.404102152	3	0.9823019	CTC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr12	76910260	12A2p6	cell line	sgMsh2	76910260	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	137	0	0	NA	exonic	Fntb	nonsynonymous SNV	Fntb:NM_145927:exon9:c.G872A:p.R291H	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	1	0.9998609	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	217	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.838297018	1	0.9484037	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	124	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.619050106	2	0.9967825	AGA	synonymous	NA	NA	NA	NA
M5_p20	chr12	79266472	12A2p6	cell line	sgMsh2	79266472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	96	0	0	NA	exonic	Zfyve26	stopgain	Zfyve26:NM_001008550:exon22:c.G4425A:p.W1475X	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.898482445	1	0.9775553	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	80720723	12A2p6	cell line	sgMsh2	80720723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	138	0	0	NA	exonic	Plekhd1	nonsynonymous SNV	Plekhd1:NM_001177503:exon9:c.T884C:p.M295T	12qC3	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.614751147	2	0.9987913	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	419	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.662039696	2	2.78E-08	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	316	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.69213241	2	0.9999547	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	322	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.821101182	1	0.8817025	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	82341775	12A2p6	cell line	sgMsh2	82341775	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	173	0	0	NA	exonic	Sipa1l1	synonymous SNV	"Sipa1l1:NM_172579:exon2:c.C774A:p.S258S,Sipa1l1:NM_001167983:exon5:c.C774A:p.S258S"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9646474	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	218	0	0	NA	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.614751147	2	0.9999891	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	407	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.683534492	2	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	83712466	12A2p6	cell line	sgMsh2	83712466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	279	0	0	NA	exonic	Psen1	nonsynonymous SNV	Psen1:NM_001362271:exon4:c.A250G:p.M84V	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.8296991	1	0.9330615	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	83791846	12A2p6	cell line	sgMsh2	83791846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	65	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon27:c.T3682C:p.S1228P,Papln:NM_001205343:exon28:c.T3748C:p.S1250P"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	1	0.9929857	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	261	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.649142819	2	0.9999879	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	336	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.786709509	2	0.7970242	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	86058904	12A2p6	cell line	sgMsh2	86058904	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	150	0	0	NA	exonic	Tgfb3	nonsynonymous SNV	Tgfb3:NM_009368:exon6:c.G1076A:p.S359N	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.588957392	2	0.9997984	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	86687000	12A2p6	cell line	sgMsh2	86687000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	157	0	0	NA	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon3:c.A463G:p.K155E	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.91997724	1	0.9981142	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	82	0	0	NA	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.64484386	2	0.9366799	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	87279780	12A2p6	cell line	sgMsh2	87279780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	123	0	0	NA	exonic	Ism2	nonsynonymous SNV	Ism2:NM_001290302:exon6:c.T1384C:p.Y462H	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.833998059	1	0.8913046	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.868389731	1	0.9650461	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	121	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.679235533	2	0.9683609	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	100	0	0	NA	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	1	0.9989541	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	373	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.571761556	2	1.18E-09	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	178	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.614751147	2	0.9998854	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	372	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.593256351	2	1.12E-09	TGA	synonymous	NA	NA	NA	NA
M5_p20	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	131	0	0	NA	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.950069954	1	0.9986773	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	98	0	0	NA	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.567462597	2	0.9957494	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	207	0	0	NA	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.889884527	1	0.9974936	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	130	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.455689661	2	0.6839365	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	144	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.739420959	2	0.8565714	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.163	425	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.700730328	NA	NA	CCA	frameshift	NA	NA	NA	1
M5_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	119	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M5_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	156	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.812503264	1	0.7864603	TTC	synonymous	NA	NA	NA	NA
M5_p20	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	91	0	0	NA	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	1	1	0.9982924	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	102558495	12A2p6	cell line	sgMsh2	102558495	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.131	81	0	0	NA	exonic	Chga	synonymous SNV	Chga:NM_007693:exon3:c.C123A:p.S41S	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.563163638	2	0.009986889	CCG	synonymous	NA	NA	NA	NA
M5_p20	chr12	103083551	12A2p6	cell line	sgMsh2	103083551	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	169	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon20:c.T2715G:p.I905M	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.386906316	3	0.9968432	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.166	335	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.713627205	2	0.99981	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	246	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr12	103333457	12A2p6	cell line	sgMsh2	103333457	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	63	0	0	NA	exonic	Asb2	nonsynonymous SNV	"Asb2:NM_001374764:exon4:c.T571C:p.W191R,Asb2:NM_023049:exon6:c.T715C:p.W239R"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.537369883	2	0.9595543	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	145	0	0	NA	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.855492854	1	0.9587707	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr12	103997113	12A2p6	cell line	sgMsh2	103997113	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	127	0	0	NA	exonic	Serpina9	nonsynonymous SNV	"Serpina9:NM_001361910:exon5:c.C1135T:p.R379C,Serpina9:NM_001361912:exon5:c.C1135T:p.R379C,Serpina9:NM_027997:exon5:c.C1135T:p.R379C"	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.662039696	2	0.9866616	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	104714802	12A2p6	cell line	sgMsh2	104714802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	269	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon9:c.T1451C:p.M484T	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.558864679	2	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.168	147	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	NA	NA	TGT	frameshift	T	5	TTTTT	1
M5_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	197	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.881286609	1	0.9948645	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	108537424	12A2p6	cell line	sgMsh2	108537424	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	150	0	0	NA	exonic	Eml1	nonsynonymous SNV	"Eml1:NM_001364199:exon18:c.G1718A:p.G573D,Eml1:NM_001364198:exon19:c.G1733A:p.G578D,Eml1:NM_001043335:exon21:c.G2279A:p.G760D,Eml1:NM_001043336:exon21:c.G2186A:p.G729D,Eml1:NM_001286346:exon21:c.G2240A:p.G747D,Eml1:NM_001364195:exon21:c.G2270A:p.G757D,Eml1:NM_001286347:exon22:c.G2237A:p.G746D,Eml1:NM_001364194:exon22:c.G2330A:p.G777D,Eml1:NM_001364196:exon22:c.G2237A:p.G746D,Eml1:NM_001364197:exon22:c.G2186A:p.G729D,Eml1:NM_001364193:exon23:c.G2372A:p.G791D"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.911379322	1	0.9965806	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	121	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.735122	2	0.806908	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	131	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.743719919	2	0.7913177	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	109033003	12A2p6	cell line	sgMsh2	109033003	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	63	0	0	NA	exonic	Begain	nonsynonymous SNV	"Begain:NM_001163175:exon7:c.A1841G:p.Y614C,Begain:NM_001374201:exon7:c.A1835G:p.Y612C,Begain:NM_001374202:exon7:c.A1823G:p.Y608C,Begain:NM_001374203:exon7:c.A1784G:p.Y595C,Begain:NM_001374200:exon8:c.A1931G:p.Y644C"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.524473006	2	0.9549537	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	110794091	12A2p6	cell line	sgMsh2	110794091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	529	0	0	NA	exonic	Wdr20	nonsynonymous SNV	"Wdr20:NM_001364273:exon3:c.G987T:p.K329N,Wdr20:NM_027149:exon3:c.G1410T:p.K470N,Wdr20:NM_001364272:exon4:c.G1290T:p.K430N"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.490081334	2	0.9996202	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	110815131	12A2p6	cell line	sgMsh2	110815131	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	162	0	0	NA	exonic	Mok	nonsynonymous SNV	Mok:NM_011973:exon5:c.G362T:p.R121I	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.730823041	2	0.9306386	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	110828057	12A2p6	cell line	sgMsh2	110828057	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	319	0	0	NA	exonic	Mok	nonsynonymous SNV	Mok:NM_011973:exon3:c.C196A:p.L66M	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.687833451	2	0.9999729	AGT	nonsynonymous	GTGCA	10	GTGCAGTGCA	NA
M5_p20	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.133	60	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.571761556	2	0.941118	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111097527	12A2p6	cell line	sgMsh2	111097527	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	249	0	0	NA	exonic	Rcor1	nonsynonymous SNV	Rcor1:NM_198023:exon5:c.T553A:p.F185I	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.786709509	2	0.6568377	CTT	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr12	111345605	12A2p6	cell line	sgMsh2	111345605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	126	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon2:c.T194C:p.L65P	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.563163638	2	0.9993346	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111429503	12A2p6	cell line	sgMsh2	111429503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	97	0	0	NA	exonic	Exoc3l4	nonsynonymous SNV	"Exoc3l4:NM_001289489:exon12:c.T1949C:p.L650P,Exoc3l4:NM_028807:exon12:c.T1949C:p.L650P,Exoc3l4:NM_001289487:exon13:c.T1949C:p.L650P,Exoc3l4:NM_001289488:exon13:c.T1949C:p.L650P"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.545967801	2	0.9948328	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111485500	12A2p6	cell line	sgMsh2	111485500	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	41	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A271C:p.S91R	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	2	1	1	0.974511	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111629000	12A2p6	cell line	sgMsh2	111629000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	222	0	0	NA	exonic	Mark3	synonymous SNV	"Mark3:NM_001370745:exon10:c.A702G:p.S234S,Mark3:NM_001370744:exon12:c.A1149G:p.S383S,Mark3:NM_021516:exon12:c.A1149G:p.S383S,Mark3:NM_022801:exon12:c.A1149G:p.S383S"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9904489	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	186	0	0	NA	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.614751147	2	0.9999285	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	119	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.653441778	2	0.9858687	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	101	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.339617766	3	0.9952665	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	146	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.623349065	2	0.9989101	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	140	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.937173077	1	0.9984278	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	180	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.760915755	2	0.8094516	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	365	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.705029287	2	0.9999691	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	231	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.881286609	1	0.9973551	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	326	0	0	NA	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.760915755	2	0.9772727	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	212	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.885585568	1	0.9970665	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M5_p20	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	80	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.7598158	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	373	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.69213241	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	154	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.752317837	2	0.8059828	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	496	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.640544901	2	1.04E-09	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	118140689	12A2p6	cell line	sgMsh2	118140689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	255	0	0	NA	exonic	Dnah11	synonymous SNV	Dnah11:NM_010060:exon12:c.T1998C:p.S666S	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.515875088	2	0.9997242	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr12	119190648	12A2p6	cell line	sgMsh2	119190648	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	156	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon5:c.G653A:p.C218Y	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.756616796	2	0.7796136	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	119208553	12A2p6	cell line	sgMsh2	119208553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	321	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon2:c.A179G:p.Q60R	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.657740737	2	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	249	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	5	4	1	0.97	4.169990295	NA	1	0.816802223	1	0.825942	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	4143255	12A2p6	cell line	sgMsh2	4143255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	434	0	0	NA	exonic	Akr1c18	nonsynonymous SNV	Akr1c18:NM_134066:exon4:c.T410C:p.L137S	13qA1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	1.01E-09	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	11706716	12A2p6	cell line	sgMsh2	11706716	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	83	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon52:c.A7828G:p.T2610A	13qA1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.395504234	3	0.8322284	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	13508777	12A2p6	cell line	sgMsh2	13508777	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	264	0	0	NA	exonic	Nid1	nonsynonymous SNV	Nid1:NM_010917:exon18:c.G3439T:p.G1147W	13qA1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	13696674	12A2p6	cell line	sgMsh2	13696674	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	60	0	0	NA	exonic	Lyst	synonymous SNV	Lyst:NM_010748:exon30:c.A7995C:p.S2665S	13qA1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.408401111	3	0.5695965	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr13	18862594	12A2p6	cell line	sgMsh2	18862594	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	178	0	0	NA	exonic	Vps41	frameshift deletion	Vps41:NM_172120:exon26:c.2314delA:p.M774Cfs*4	13qA2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	273	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	21754253	12A2p6	cell line	sgMsh2	21754253	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	176	0	0	NA	exonic	H2bc15	nonsynonymous SNV	H2bc15:NM_178201:exon1:c.A131G:p.K44R	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	421	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	1.03E-09	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	288	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	3.79E-08	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	22524076	12A2p6	cell line	sgMsh2	22524076	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	286	0	0	NA	exonic	Vmn1r203	frameshift deletion	Vmn1r203:NM_134236:exon1:c.26delA:p.M11Wfs*2	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.868389731	NA	NA	GAA	frameshift	AGGA	9	AGGAAGGAA	-1
M5_p20	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	202	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.999996	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	22827474	12A2p6	cell line	sgMsh2	22827474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	566	0	0	NA	exonic	Vmn1r210	nonsynonymous SNV	Vmn1r210:NM_134235:exon1:c.A641G:p.Y214C	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	5.19E-08	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	366	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	1.52E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	24022624	12A2p6	cell line	sgMsh2	24022624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	115	0	0	NA	exonic	Carmil1	nonsynonymous SNV	"Carmil1:NM_001311122:exon36:c.A3851G:p.D1284G,Carmil1:NM_001384122:exon36:c.A3851G:p.D1284G,Carmil1:NM_026825:exon37:c.A3863G:p.D1288G"	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9986023	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	117	0	0	NA	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995859	GCA	synonymous	NA	NA	NA	NA
M5_p20	chr13	24831893	12A2p6	cell line	sgMsh2	24831893	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	24	0	0	NA	exonic	Tdp2	frameshift deletion	Tdp2:NM_019551:exon1:c.162delC:p.S56Afs*13	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5_p20	chr13	27270182	12A2p6	cell line	sgMsh2	27270182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	338	0	0	NA	exonic	Prl3a1	nonsynonymous SNV	Prl3a1:NM_025896:exon2:c.T142C:p.F48L	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	3.41E-09	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	27776275	12A2p6	cell line	sgMsh2	27776275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	201	0	0	NA	exonic	Prl7c1	nonsynonymous SNV	"Prl7c1:NM_001368392:exon3:c.A244G:p.I82V,Prl7c1:NM_026206:exon4:c.A283G:p.I95V"	13qA3.1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999958	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	272	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	34163247	12A2p6	cell line	sgMsh2	34163247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	30	0	0	NA	exonic	Psmg4	nonsynonymous SNV	"Psmg4:NM_001101430:exon1:c.T172C:p.Y58H,Psmg4:NM_001110515:exon1:c.T172C:p.Y58H"	13qA3.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.954508	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	86	0	0	NA	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.9977582	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	38510225	12A2p6	cell line	sgMsh2	38510225	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	59	0	0	NA	exonic	Txndc5	nonsynonymous SNV	"Txndc5:NM_001289598:exon5:c.T310G:p.F104V,Txndc5:NM_001289599:exon5:c.T373G:p.F125V,Txndc5:NM_145367:exon5:c.T592G:p.F198V"	13qA3.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9902963	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	112	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.9994562	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	217	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999972	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	163	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999663	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	75	0	0	NA	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9889093	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr13	49662355	12A2p6	cell line	sgMsh2	49662355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	283	0	0	NA	exonic	Nol8	synonymous SNV	Nol8:NM_001271397:exon7:c.T1938C:p.C646C	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	4.94E-08	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	218	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999983	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	97	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	50475010	12A2p6	cell line	sgMsh2	50475010	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	74	0	0	NA	exonic	Nutm2	synonymous SNV	Nutm2:NM_001033400:exon7:c.C2109A:p.L703L	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9904037	TCT	synonymous	NA	NA	NA	NA
M5_p20	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	49	0	0	NA	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.9833744	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	85	0	0	NA	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.9976328	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M5_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.379	96	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5_p20	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	186	0	0	NA	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9975094	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	122	0	0	NA	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996847	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	59718309	12A2p6	cell line	sgMsh2	59718309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	89	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3270C:p.K1090N	13qB2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9980959	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	276	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	61000538	12A2p6	cell line	sgMsh2	61000538	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	250	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon8:c.C944T:p.A315V,Ctsj:NM_012007:exon8:c.C941T:p.A314V"	13qB2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	61003076	12A2p6	cell line	sgMsh2	61003076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T569C:p.V190A,Ctsj:NM_012007:exon5:c.T566C:p.V189A"	13qB2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.09391302	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	61159526	12A2p6	cell line	sgMsh2	61159526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	248	0	0	NA	exonic	Ctsr	stopgain	Ctsr:NM_020284:exon8:c.A955T:p.K319X	13qB2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.765214714	2	0.09880058	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	103	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.833998059	1	0.8798317	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr13	64312589	12A2p6	cell line	sgMsh2	64312589	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.375	10	0	0	NA	exonic	Prxl2c	synonymous SNV	Prxl2c:NM_025370:exon1:c.C96A:p.A32A	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.8745638	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr13	67442555	12A2p6	cell line	sgMsh2	67442555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	398	0	0	NA	exonic	Zfp874a	stopgain	Zfp874a:NM_177712:exon4:c.G1009T:p.E337X	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	1.09E-09	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Vardict	2	0.197	128	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.846894936	NA	NA	TAG	frameshift	NA	NA	NA	-1
M5_p20	chr13	68584570	12A2p6	cell line	sgMsh2	68584570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	112	0	0	NA	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.A1009G:p.K337E,Fastkd3:NM_027123:exon2:c.A1009G:p.K337E"	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994562	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	68678525	12A2p6	cell line	sgMsh2	68678525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	180	0	0	NA	exonic	Adcy2	nonsynonymous SNV	Adcy2:NM_153534:exon16:c.A2059G:p.T687A	13qB3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999867	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	43	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	2	1	1	0.9770849	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr13	74737623	12A2p6	cell line	sgMsh2	74737623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	112	0	0	NA	exonic	Cast	synonymous SNV	"Cast:NM_001301156:exon10:c.T573C:p.N191N,Cast:NM_001301157:exon10:c.T573C:p.N191N,Cast:NM_001301155:exon11:c.T630C:p.N210N,Cast:NM_009817:exon12:c.T777C:p.N259N,Cast:NM_001301153:exon13:c.T879C:p.N293N"	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994562	CAT	synonymous	T	5	TTTTT	NA
M5_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	217	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999982	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	76129467	12A2p6	cell line	sgMsh2	76129467	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	193	0	0	NA	exonic	Ttc37	synonymous SNV	Ttc37:NM_001081352:exon18:c.T1560G:p.A520A	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999903	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr13	77183741	12A2p6	cell line	sgMsh2	77183741	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	106	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	"2210408I21Rik:NM_001081353:exon3:c.G272A:p.G91E,2210408I21Rik:NM_001145676:exon3:c.G272A:p.G91E"	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	77267679	12A2p6	cell line	sgMsh2	77267679	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	160	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon10:c.C1890T:p.F630F	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8181105	TCG	synonymous	NA	NA	NA	NA
M5_p20	chr13	77316362	12A2p6	cell line	sgMsh2	77316362	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	122	0	0	NA	exonic	2210408I21Rik	stopgain	2210408I21Rik:NM_001145676:exon15:c.G2677T:p.E893X	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996847	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	77316514	12A2p6	cell line	sgMsh2	77316514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	113	0	0	NA	exonic	2210408I21Rik	synonymous SNV	2210408I21Rik:NM_001145676:exon15:c.C2829T:p.S943S	13qC1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.7115989	GCA	synonymous	NA	NA	NA	NA
M5_p20	chr13	81419685	12A2p6	cell line	sgMsh2	81419685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	295	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon74:c.A15368T:p.D5123V	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9976847	GTC	nonsynonymous	AGTCA	10	AGTCAAGTCA	NA
M5_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	187	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999909	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	129	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997848	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	83625321	12A2p6	cell line	sgMsh2	83625321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	220	0	0	NA	exonic	Mef2c	synonymous SNV	"Mef2c:NM_001347566:exon4:c.T315C:p.D105D,Mef2c:NM_001347567:exon4:c.T315C:p.D105D,Mef2c:NM_001347573:exon4:c.T315C:p.D105D,Mef2c:NM_001347574:exon4:c.T315C:p.D105D,Mef2c:NM_001347575:exon4:c.T315C:p.D105D,Mef2c:NM_001347576:exon4:c.T315C:p.D105D,Mef2c:NM_001347577:exon4:c.T315C:p.D105D,Mef2c:NM_001347578:exon4:c.T315C:p.D105D,Mef2c:NM_001347579:exon4:c.T315C:p.D105D,Mef2c:NM_001347580:exon4:c.T315C:p.D105D,Mef2c:NM_001347581:exon4:c.T315C:p.D105D,Mef2c:NM_001170537:exon5:c.T315C:p.D105D,Mef2c:NM_001347564:exon5:c.T315C:p.D105D,Mef2c:NM_001347571:exon5:c.T315C:p.D105D,Mef2c:NM_001347572:exon5:c.T315C:p.D105D"	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999985	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr13	85225580	12A2p6	cell line	sgMsh2	85225580	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	322	0	0	NA	exonic	Rasa1	nonsynonymous SNV	Rasa1:NM_145452:exon18:c.T2362G:p.L788V	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	6.77E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	85233721	12A2p6	cell line	sgMsh2	85233721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	47	0	0	NA	exonic	Rasa1	stopgain	Rasa1:NM_145452:exon11:c.T1451G:p.L484X	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.760915755	1	0.6597261	TAA	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr13	85256444	12A2p6	cell line	sgMsh2	85256444	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	94	0	0	NA	exonic	Rasa1	synonymous SNV	Rasa1:NM_145452:exon3:c.T696C:p.I232I	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr13	89712395	12A2p6	cell line	sgMsh2	89712395	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	45	0	0	NA	exonic	Vcan	nonsynonymous SNV	"Vcan:NM_001081249:exon6:c.G852T:p.Q284H,Vcan:NM_001134474:exon6:c.G852T:p.Q284H,Vcan:NM_001134475:exon6:c.G852T:p.Q284H,Vcan:NM_019389:exon6:c.G852T:p.Q284H,Vcan:NM_172955:exon6:c.G852T:p.Q284H"	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9794044	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	284	0	0	NA	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	4.68E-08	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr13	93092519	12A2p6	cell line	sgMsh2	93092519	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.103	130	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.G6060A:p.G2020G	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.442792784	3	0.5328043	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	61	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.9754772	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	95700896	12A2p6	cell line	sgMsh2	95700896	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	254	0	0	NA	exonic	F2rl2	nonsynonymous SNV	F2rl2:NM_010170:exon2:c.G448A:p.A150T	13qD1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9999973	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	179	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.950069954	1	0.9998044	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr13	100060821	12A2p6	cell line	sgMsh2	100060821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	154	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A3055G:p.T1019A	13qD1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999379	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	100803455	12A2p6	cell line	sgMsh2	100803455	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	87	0	0	NA	exonic	Slc30a5	nonsynonymous SNV	Slc30a5:NM_022885:exon16:c.G2122T:p.G708W	13qD1	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	66	0	0	NA	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	113616984	12A2p6	cell line	sgMsh2	113616984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	68	0	0	NA	exonic	Snx18	nonsynonymous SNV	Snx18:NM_130796:exon1:c.T1412C:p.L471P	13qD2.2	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9562165	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	223	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9959033	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	139	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9811886	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr13	119455737	12A2p6	cell line	sgMsh2	119455737	T	-	Deletion	Mutect2;Vardict	2	0.168	113	0	0	NA	exonic	Paip1	frameshift deletion	"Paip1:NM_001079849:exon10:c.958delT:p.P322Qfs*87,Paip1:NM_145457:exon10:c.1057delT:p.P355Qfs*87"	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	0.722225123	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr13	119484468	12A2p6	cell line	sgMsh2	119484468	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	199	0	0	NA	exonic	4833420G17Rik	nonsynonymous SNV	"4833420G17Rik:NM_001113550:exon12:c.G1704T:p.E568D,4833420G17Rik:NM_001360805:exon12:c.G1704T:p.E568D,4833420G17Rik:NM_026127:exon13:c.G1704T:p.E568D"	13qD2.3	chr13-3556297-119495179	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999953	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	3225359	12A2p6	cell line	sgMsh2	3225359	G	-	Deletion	Strelka2;Vardict	2	0.0484	578	0	0	NA	exonic	D830030K20Rik	frameshift deletion	"D830030K20Rik:NM_001320366:exon2:c.45delG:p.E16Nfs*7,D830030K20Rik:NM_177135:exon2:c.45delG:p.E16Nfs*7"	14qA1	chr14-3190453-4037583	3.70531048	2.70531048	1	0.97	4.169990295	NA	1	0.208069619	NA	NA	TGG	frameshift	NA	NA	NA	-1
M5_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	169	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999575	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr14	8253530	12A2p6	cell line	sgMsh2	8253530	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	126	0	0	NA	exonic	Acox2	nonsynonymous SNV	"Acox2:NM_001161667:exon6:c.G616T:p.A206S,Acox2:NM_053115:exon6:c.G616T:p.A206S"	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997465	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	33	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	2	1	1	0.9611086	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	12121999	12A2p6	cell line	sgMsh2	12121999	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	91	0	0	NA	exonic	Ptprg	nonsynonymous SNV	Ptprg:NM_008981:exon8:c.T862A:p.F288I	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	0.752317837	2	9.80E-08	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	12373661	12A2p6	cell line	sgMsh2	12373661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	201	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001359920:exon29:c.G3991T:p.G1331C,Cadps:NM_012061:exon29:c.G4039T:p.G1347C,Cadps:NM_001359921:exon30:c.G3931T:p.G1311C,Cadps:NM_001042617:exon31:c.G4021T:p.G1341C,Cadps:NM_001359919:exon31:c.G4009T:p.G1337C"	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999958	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	119	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	14175138	12A2p6	cell line	sgMsh2	14175138	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	36	0	0	NA	exonic	Olfr720	synonymous SNV	Olfr720:NM_146392:exon1:c.A943C:p.R315R	14qA1	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	7.80E-05	CTT	synonymous	TTTC	8	TTTCTTTC	NA
M5_p20	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	101	0	0	NA	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7548571-19566630	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9581199	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	135	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998448	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	20420715	12A2p6	cell line	sgMsh2	20420715	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	194	0	0	NA	exonic	Cfap70	synonymous SNV	"Cfap70:NM_001163638:exon14:c.A1461T:p.I487I,Cfap70:NM_001163639:exon15:c.A1629T:p.I543I,Cfap70:NM_029698:exon15:c.A1629T:p.I543I"	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9703629	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	113	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.511576129	2	0.9863084	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	69	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.898482445	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	58	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.748018878	1	0.5664799	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	25662959	12A2p6	cell line	sgMsh2	25662959	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	174	0	0	NA	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon24:c.A3113C:p.N1038T,Zmiz1:NM_183208:exon24:c.A3131C:p.N1044T"	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999815	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	254	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	176	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.722225123	2	0.9673316	GAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr14	29988224	12A2p6	cell line	sgMsh2	29988224	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	161	0	0	NA	exonic	Actr8	nonsynonymous SNV	Actr8:NM_027493:exon8:c.G947T:p.R316M	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999624	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	77	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.928575158	NA	NA	TCC	frameshift	NA	NA	NA	-1
M5_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	113	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9851251	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	96	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	2	1	1	0.9986994	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	30921912	12A2p6	cell line	sgMsh2	30921912	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	114	0	0	NA	exonic	Itih3	nonsynonymous SNV	Itih3:NM_008407:exon3:c.A239G:p.D80G	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.382607357	3	0.9736285	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	85	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9976328	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	249	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr14	30940878	12A2p6	cell line	sgMsh2	30940878	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.264	255	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon6:c.G684A:p.G228G,Itih1:NM_008406:exon6:c.G672A:p.G224G"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	TCC	synonymous	T	5	TTTTT	NA
M5_p20	chr14	31010148	12A2p6	cell line	sgMsh2	31010148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	66	0	0	NA	exonic	Glt8d1	nonsynonymous SNV	"Glt8d1:NM_001165930:exon6:c.A515G:p.D172G,Glt8d1:NM_029626:exon6:c.A515G:p.D172G"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	GAT	nonsynonymous	GAT	10	GATGATGATG	NA
M5_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	146	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.9311222	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	128	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997727	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	116	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9815375	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	32102327	12A2p6	cell line	sgMsh2	32102327	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	156	0	0	NA	exonic	Oxnad1	synonymous SNV	Oxnad1:NM_145460:exon8:c.A852T:p.P284P	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999506	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	130	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.571761556	2	0.9994913	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	87	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	2	1	1	0.9978769	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.3043	23	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr14	33393091	12A2p6	cell line	sgMsh2	33393091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	138	0	0	NA	exonic	Mapk8	nonsynonymous SNV	"Mapk8:NM_001310452:exon5:c.A467G:p.N156S,Mapk8:NM_001310453:exon6:c.A467G:p.N156S,Mapk8:NM_001310454:exon6:c.A467G:p.N156S,Mapk8:NM_016700:exon6:c.A467G:p.N156S"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998683	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	34434451	12A2p6	cell line	sgMsh2	34434451	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	172	0	0	NA	exonic	Bmpr1a	nonsynonymous SNV	Bmpr1a:NM_009758:exon7:c.G458T:p.W153L	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999794	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	127	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	140	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998819	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	98	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-41183403	4	2	2	0.97	4.169990295	NA	1	0.610452187	2	0.9887817	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	265	0	0	NA	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.999966	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	175	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.511576129	2	0.9967854	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr14	47089060	12A2p6	cell line	sgMsh2	47089060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	93	0	0	NA	exonic	Samd4	nonsynonymous SNV	"Samd4:NM_001310544:exon6:c.A686G:p.N229S,Samd4:NM_001163433:exon10:c.A1610G:p.N537S,Samd4:NM_028966:exon10:c.A1649G:p.N550S,Samd4:NM_001037221:exon11:c.A1913G:p.N638S"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9966697	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	47268738	12A2p6	cell line	sgMsh2	47268738	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	208	0	0	NA	exonic	Wdhd1	nonsynonymous SNV	"Wdhd1:NM_001360532:exon8:c.C718T:p.P240S,Wdhd1:NM_172598:exon8:c.C718T:p.P240S"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9975483	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	47529305	12A2p6	cell line	sgMsh2	47529305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	134	0	0	NA	exonic	Fbxo34	nonsynonymous SNV	"Fbxo34:NM_030236:exon2:c.A274G:p.S92G,Fbxo34:NM_001146086:exon3:c.A121G:p.S41G,Fbxo34:NM_001146085:exon4:c.A121G:p.S41G"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.950069954	1	0.9988261	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	133	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.999827	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.78	35	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M5_p20	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	249	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	49773243	12A2p6	cell line	sgMsh2	49773243	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	84	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon2:c.C1006T:p.P336S,Armh4:NM_026142:exon2:c.C1006T:p.P336S"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.944809	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50299113	12A2p6	cell line	sgMsh2	50299113	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	164	0	0	NA	exonic	Olfr733	nonsynonymous SNV	Olfr733:NM_146663:exon1:c.T195G:p.N65K	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9991847	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	96	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.812503264	1	0.7930776	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	330	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	4.73E-09	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	242	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.627648024	2	0.9999934	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	47	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.9814936	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	113	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.78241055	1	0.5820026	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr14	50893051	12A2p6	cell line	sgMsh2	50893051	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	66	0	0	NA	exonic	Klhl33	nonsynonymous SNV	"Klhl33:NM_001166651:exon1:c.A205C:p.S69R,Klhl33:NM_001370764:exon2:c.A985C:p.S329R"	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	68	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	2	1	1	0.9940382	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	88	0	0	NA	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.705029287	2	0.8078281	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9685892	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	192	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999931	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M5_p20	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	42	0	0	NA	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr14	52298743	12A2p6	cell line	sgMsh2	52298743	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	164	0	0	NA	exonic	Mettl3	nonsynonymous SNV	Mettl3:NM_019721:exon4:c.T796G:p.S266A	14qC2	chr14-43673573-52852156	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999681	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	103	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9991118	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	116	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995627	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.213	19	0	0	NA	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.8776099	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	73	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	90	0	0	NA	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	55580423	12A2p6	cell line	sgMsh2	55580423	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	160	0	0	NA	exonic	Psme1	nonsynonymous SNV	Psme1:NM_011189:exon6:c.A386C:p.N129T	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999603	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	55718523	12A2p6	cell line	sgMsh2	55718523	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	101	0	0	NA	exonic	Rabggta	nonsynonymous SNV	"Rabggta:NM_019519:exon13:c.C1276T:p.R426C,Rabggta:NM_001360387:exon14:c.C1276T:p.R426C,Rabggta:NM_001360388:exon14:c.C1276T:p.R426C"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.5797629	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	55720950	12A2p6	cell line	sgMsh2	55720950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	43	0	0	NA	exonic	Rabggta	synonymous SNV	"Rabggta:NM_019519:exon4:c.T253C:p.L85L,Rabggta:NM_001360387:exon5:c.T253C:p.L85L,Rabggta:NM_001360388:exon5:c.T253C:p.L85L"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9770849	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr14	55751244	12A2p6	cell line	sgMsh2	55751244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	67	0	0	NA	exonic	Nop9	nonsynonymous SNV	Nop9:NM_026403:exon5:c.T1142C:p.L381P	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9937061	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	73	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr14	56043442	12A2p6	cell line	sgMsh2	56043442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	144	0	0	NA	exonic	Mcpt2	nonsynonymous SNV	Mcpt2:NM_008571:exon3:c.T286C:p.F96L	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.999905	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;MuSe;Vardict	3	0.105	119	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.451390702	2	7.71E-06	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	143	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998997	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	318	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.537369883	2	0.9999986	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	57597104	12A2p6	cell line	sgMsh2	57597104	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	57	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.A2018G:p.E673G,Xpo4:NM_001368697:exon16:c.A1796G:p.E599G"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9258028	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	57890141	12A2p6	cell line	sgMsh2	57890141	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	56	0	0	NA	exonic	Zdhhc20	nonsynonymous SNV	"Zdhhc20:NM_001360097:exon1:c.G40A:p.V14M,Zdhhc20:NM_001360098:exon1:c.G40A:p.V14M,Zdhhc20:NM_029492:exon1:c.G40A:p.V14M"	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9885908	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	237	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr14	61205151	12A2p6	cell line	sgMsh2	61205151	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	175	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4645G:p.R1549G	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999825	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	239	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.992453	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M5_p20	chr14	62606644	12A2p6	cell line	sgMsh2	62606644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	99	0	0	NA	exonic	Fam124a	nonsynonymous SNV	Fam124a:NM_001243857:exon4:c.T1600C:p.F534L	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	64896965	12A2p6	cell line	sgMsh2	64896965	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	181	0	0	NA	exonic	Hmbox1	nonsynonymous SNV	"Hmbox1:NM_001347626:exon3:c.G185A:p.G62E,Hmbox1:NM_001347627:exon3:c.G185A:p.G62E,Hmbox1:NM_177338:exon3:c.G185A:p.G62E"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999874	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	65565467	12A2p6	cell line	sgMsh2	65565467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	129	0	0	NA	exonic	Elp3	synonymous SNV	"Elp3:NM_001253812:exon8:c.T681C:p.S227S,Elp3:NM_028811:exon8:c.T624C:p.S208S"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997848	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	65826534	12A2p6	cell line	sgMsh2	65826534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	241	0	0	NA	exonic	Esco2	synonymous SNV	Esco2:NM_028039:exon7:c.C1200T:p.D400D	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999995	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	123	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	125	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997323	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M5_p20	chr14	66158534	12A2p6	cell line	sgMsh2	66158534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	114	0	0	NA	exonic	Ptk2b	synonymous SNV	"Ptk2b:NM_172498:exon24:c.C2358T:p.C786C,Ptk2b:NM_001162365:exon25:c.C2484T:p.C828C,Ptk2b:NM_001162366:exon25:c.C2484T:p.C828C,Ptk2b:NM_001360233:exon25:c.C2484T:p.C828C"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995124	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr14	66175190	12A2p6	cell line	sgMsh2	66175190	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	117	0	0	NA	exonic	Ptk2b	synonymous SNV	"Ptk2b:NM_001162365:exon12:c.G1128A:p.L376L,Ptk2b:NM_001162366:exon12:c.G1128A:p.L376L,Ptk2b:NM_001360233:exon12:c.G1128A:p.L376L,Ptk2b:NM_172498:exon12:c.G1128A:p.L376L"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	1	0.9995859	GCA	synonymous	AGGC	8	AGGCAGGC	NA
M5_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	149	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.91997724	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr14	68504619	12A2p6	cell line	sgMsh2	68504619	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	344	0	0	NA	exonic	Adam7	synonymous SNV	Adam7:NM_007402:exon20:c.C2187T:p.T729T	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	3.27E-09	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr14	68571814	12A2p6	cell line	sgMsh2	68571814	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.241	134	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon8:c.A698G:p.Y233C	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998361	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.13	255	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.558864679	2	0.9999992	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr14	70578054	12A2p6	cell line	sgMsh2	70578054	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.107	44	0	0	NA	exonic	Nudt18	nonsynonymous SNV	Nudt18:NM_153136:exon1:c.G106A:p.V36M	14qD2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.45998862	2	0.7846327	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	72567427	12A2p6	cell line	sgMsh2	72567427	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.141	98	0	0	NA	exonic	Fndc3a	synonymous SNV	Fndc3a:NM_207636:exon13:c.A1413C:p.A471A	14qD2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.606153228	2	0.9900392	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	121	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	1	0.9996671	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	221	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999986	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	204	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.9438123	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	77582493	12A2p6	cell line	sgMsh2	77582493	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	85	0	0	NA	exonic	Enox1	nonsynonymous SNV	"Enox1:NM_001253759:exon10:c.A687C:p.E229D,Enox1:NM_172813:exon10:c.A687C:p.E229D"	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9976328	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	79466334	12A2p6	cell line	sgMsh2	79466334	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	0	0	NA	exonic	Wbp4	nonsynonymous SNV	Wbp4:NM_018765:exon9:c.A772G:p.T258A	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9842431	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	84447153	12A2p6	cell line	sgMsh2	84447153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	74	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.T1059C:p.G353G	14qD3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr14	87506459	12A2p6	cell line	sgMsh2	87506459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	68	0	0	NA	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon11:c.T1842C:p.D614D,Tdrd3:NM_172605:exon11:c.T1842C:p.D614D"	14qE1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9940382	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr14	88467939	12A2p6	cell line	sgMsh2	88467939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	155	0	0	NA	exonic	Pcdh20	nonsynonymous SNV	Pcdh20:NM_178685:exon3:c.A1924G:p.N642D	14qE1	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	99101089	12A2p6	cell line	sgMsh2	99101089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	52	0	0	NA	exonic	Pibf1	nonsynonymous SNV	Pibf1:NM_029320:exon2:c.A40G:p.I14V	14qE2.2	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	2	1	1	0.9858485	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	312	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	1.10E-08	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	103306292	12A2p6	cell line	sgMsh2	103306292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	141	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon4:c.T646C:p.F216L	14qE2.3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.455689661	2	9.16E-07	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	104465852	12A2p6	cell line	sgMsh2	104465852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	53	0	0	NA	exonic	Pou4f1	synonymous SNV	Pou4f1:NM_011143:exon2:c.G1143A:p.R381R	14qE2.3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9865897	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr14	104479438	12A2p6	cell line	sgMsh2	104479438	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	147	0	0	NA	exonic	Obi1	stopgain	Obi1:NM_026047:exon6:c.G1498T:p.G500X	14qE2.3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999194	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	116	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.752317837	2	0.6738044	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	108911712	12A2p6	cell line	sgMsh2	108911712	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	145	0	0	NA	exonic	Slitrk1	synonymous SNV	Slitrk1:NM_199065:exon1:c.C1566T:p.I522I	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999101	GGA	synonymous	NA	NA	NA	NA
M5_p20	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	71	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9555453	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	110750419	12A2p6	cell line	sgMsh2	110750419	T	-	Deletion	Mutect2;Vardict	2	0.152	122	0	0	NA	exonic	Slitrk6	frameshift deletion	Slitrk6:NM_175499:exon2:c.1855delA:p.T619Lfs*24	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.653441778	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	110	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993936	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr14	118235594	12A2p6	cell line	sgMsh2	118235594	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	33	0	0	NA	exonic	Sox21	synonymous SNV	Sox21:NM_177753:exon1:c.C42A:p.A14A	14qE4	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.0978897	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	223	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	119007321	12A2p6	cell line	sgMsh2	119007321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	72	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon34:c.A3796G:p.I1266V	14qE4	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9952012	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.142	83	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.610452187	2	0.9727202	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	121238629	12A2p6	cell line	sgMsh2	121238629	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	106	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon10:c.G857T:p.S286I	14qE5	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	0.855492854	1	0.9357599	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	325	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123291781	4	2	2	0.97	4.169990295	NA	1	1	1	5.90E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	186	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	416	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	247	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999997	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M5_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	144	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.999905	ATG	synonymous	A	5	AAAAA	NA
M5_p20	chr15	4947253	12A2p6	cell line	sgMsh2	4947253	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	238	0	0	NA	exonic	Mroh2b	synonymous SNV	Mroh2b:NM_001166066:exon34:c.C3687A:p.T1229T	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.881286609	1	0.9976932	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	211	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.717926164	2	0.9901352	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	167	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999729	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	204	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.786709509	2	0.5689484	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	10462241	12A2p6	cell line	sgMsh2	10462241	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	220	0	0	NA	exonic	Dnajc21	synonymous SNV	Dnajc21:NM_030046:exon3:c.T297G:p.G99G	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999985	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	138	0	0	NA	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9998683	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	146	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.958667872	1	0.9994968	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	52	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	3	1	1	0.9858485	CTT	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	166	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.717926164	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr15	28235733	12A2p6	cell line	sgMsh2	28235733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	575	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon8:c.T1005C:p.T335T	15qB1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.812503264	1	0.7360197	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	179	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.962966831	1	0.9999009	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	343	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	2.83E-09	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	31297384	12A2p6	cell line	sgMsh2	31297384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	32	0	0	NA	exonic	Ankrd33b	nonsynonymous SNV	"Ankrd33b:NM_001357922:exon3:c.T656C:p.V219A,Ankrd33b:NM_001164441:exon4:c.T1226C:p.V409A,Ankrd33b:NM_027496:exon4:c.T1199C:p.V400A,Ankrd33b:NM_001357923:exon5:c.T812C:p.V271A"	15qB2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9590175	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	31492758	12A2p6	cell line	sgMsh2	31492758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	110	0	0	NA	exonic	Marchf6	nonsynonymous SNV	Marchf6:NM_172606:exon9:c.A842G:p.D281G	15qB2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	1	1	0.9993936	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	37	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9684922	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	326	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.907080363	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M5_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	205	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.541668842	2	0.9999421	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	144	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	1	1	0.999905	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M5_p20	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	125	0	0	NA	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9997323	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	39784630	12A2p6	cell line	sgMsh2	39784630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	270	0	0	NA	exonic	Dpys	nonsynonymous SNV	"Dpys:NM_001164466:exon9:c.A1528G:p.T510A,Dpys:NM_022722:exon9:c.A1528G:p.T510A"	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.760915755	2	0.9465132	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	382	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	1.22E-09	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	44673420	12A2p6	cell line	sgMsh2	44673420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	208	0	0	NA	exonic	Sybu	synonymous SNV	"Sybu:NM_001285841:exon4:c.T495C:p.S165S,Sybu:NM_001285842:exon5:c.T495C:p.S165S,Sybu:NM_001285844:exon5:c.T714C:p.S238S,Sybu:NM_001032727:exon6:c.T909C:p.S303S,Sybu:NM_001285843:exon6:c.T822C:p.S274S,Sybu:NM_001285840:exon7:c.T1125C:p.S375S,Sybu:NM_001358583:exon7:c.T756C:p.S252S,Sybu:NM_001358584:exon7:c.T756C:p.S252S,Sybu:NM_001358582:exon8:c.T1122C:p.S374S,Sybu:NM_176998:exon8:c.T1509C:p.S503S,Sybu:NM_178765:exon8:c.T1125C:p.S375S"	15qB3.2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999971	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr15	47582455	12A2p6	cell line	sgMsh2	47582455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	399	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon71:c.T11120C:p.V3707A	15qB3.3	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.795307427	2	0.7064062	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	47585645	12A2p6	cell line	sgMsh2	47585645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon70:c.T10952G:p.L3651R	15qB3.3	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.722225123	2	0.9173777	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	175	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.8296991	1	0.8981824	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	47914060	12A2p6	cell line	sgMsh2	47914060	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	292	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon23:c.C3761T:p.S1254F	15qB3.3	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.812503264	1	0.7708958	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	48314092	12A2p6	cell line	sgMsh2	48314092	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	116	0	0	NA	exonic	Csmd3	frameshift deletion	Csmd3:NM_001081391:exon7:c.1049delT:p.L350Pfs*7	15qB3.3	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.735122	NA	NA	GAG	frameshift	NA	NA	NA	-1
M5_p20	chr15	50846918	12A2p6	cell line	sgMsh2	50846918	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	125	0	0	NA	exonic	Trps1	frameshift deletion	"Trps1:NM_001310481:exon2:c.35delC:p.P12Lfs*1,Trps1:NM_001310485:exon2:c.35delC:p.P12Lfs*1,Trps1:NM_032000:exon2:c.23delC:p.P8Lfs*1"	15qC	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.821101182	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M5_p20	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	154	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.627648024	2	0.9991564	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	86	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.984461626	1	0.9966809	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	119	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9996287	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	81	0	0	NA	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9970573	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	439	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	193	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999934	TGA	synonymous	NA	NA	NA	NA
M5_p20	chr15	65889623	12A2p6	cell line	sgMsh2	65889623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	160	0	0	NA	exonic	Oc90	nonsynonymous SNV	"Oc90:NM_001347038:exon7:c.A545G:p.N182S,Oc90:NM_010953:exon7:c.A545G:p.N182S"	15qD1	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.528771965	2	0.9989561	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	66912929	12A2p6	cell line	sgMsh2	66912929	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	96	0	0	NA	exonic	Ccn4	synonymous SNV	Ccn4:NM_018865:exon3:c.G450T:p.T150T	15qD2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	2	1	1	0.9986994	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr15	66948408	12A2p6	cell line	sgMsh2	66948408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	163	0	0	NA	exonic	Ndrg1	nonsynonymous SNV	Ndrg1:NM_008681:exon4:c.T176C:p.I59T	15qD2	chr15-3279130-67114084	5	3	2	0.97	4.169990295	NA	1	0.584658433	2	0.9999277	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	108	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9978075	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	73586721	12A2p6	cell line	sgMsh2	73586721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	97	0	0	NA	exonic	Slc45a4	synonymous SNV	"Slc45a4:NM_001168255:exon4:c.T396C:p.S132S,Slc45a4:NM_001033219:exon5:c.T978C:p.S326S,Slc45a4:NM_001357747:exon5:c.T978C:p.S326S"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr15	73723510	12A2p6	cell line	sgMsh2	73723510	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	189	0	0	NA	exonic	Ptp4a3	nonsynonymous SNV	Ptp4a3:NM_001166390:exon1:c.C43A:p.L15I	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9996581	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	74611553	12A2p6	cell line	sgMsh2	74611553	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.334	42	0	0	NA	exonic	Mroh4	frameshift deletion	Mroh4:NM_001177437:exon19:c.1934delT:p.F645Sfs*4	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	111	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994257	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	96	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	2	1	1	0.9986994	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	128	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997727	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	130	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997962	GCG	synonymous	NA	NA	NA	NA
M5_p20	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	37	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9684922	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2	2	0.185	36	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	7.80E-05	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.185	36	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	7.80E-05	AGA	synonymous	NA	NA	NA	NA
M5_p20	chr15	76240717	12A2p6	cell line	sgMsh2	76240717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	52	0	0	NA	exonic	Parp10	synonymous SNV	"Parp10:NM_001163576:exon7:c.T1839C:p.A613A,Parp10:NM_001163575:exon8:c.T1839C:p.A613A"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.5351713	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr15	76401587	12A2p6	cell line	sgMsh2	76401587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	121	0	0	NA	exonic	Mroh1	synonymous SNV	"Mroh1:NM_001162489:exon4:c.G180A:p.P60P,Mroh1:NM_175457:exon5:c.G180A:p.P60P"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	CGT	synonymous	CCGTA	11	CCGTACCGTAC	NA
M5_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	92	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.851193895	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M5_p20	chr15	76622239	12A2p6	cell line	sgMsh2	76622239	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	229	0	0	NA	exonic	Vps28	synonymous SNV	"Vps28:NM_001305668:exon10:c.C546T:p.H182H,Vps28:NM_025842:exon10:c.C660T:p.H220H"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9999149	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	232	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	55	0	0	NA	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9879589	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr15	76694344	12A2p6	cell line	sgMsh2	76694344	C	-	Deletion	Strelka2;Vardict	2	0.225	40	0	0	NA	exonic	Ppp1r16a	frameshift deletion	"Ppp1r16a:NM_033371:exon11:c.1247delC:p.R420Dfs*7,Ppp1r16a:NM_001358933:exon12:c.1247delC:p.R420Dfs*7"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.96726579	NA	NA	GCC	frameshift	C	8	CCCCCCCC	-1
M5_p20	chr15	76715514	12A2p6	cell line	sgMsh2	76715514	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	198	0	0	NA	exonic	Lrrc24	nonsynonymous SNV	Lrrc24:NM_198119:exon6:c.G1424A:p.G475E	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999876	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	146	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	76890281	12A2p6	cell line	sgMsh2	76890281	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	83	0	0	NA	exonic	Zfp7	synonymous SNV	"Zfp7:NM_001358816:exon5:c.C522T:p.H174H,Zfp7:NM_001358817:exon5:c.C519T:p.H173H,Zfp7:NM_001358818:exon5:c.C93T:p.H31H,Zfp7:NM_145916:exon5:c.C522T:p.H174H"	15qD3	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9973606	ACC	synonymous	NA	NA	NA	NA
M5_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	250	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9999955	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	0	0	NA	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9901835	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	90	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr15	78889034	12A2p6	cell line	sgMsh2	78889034	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	83	0	0	NA	exonic	Gga1	synonymous SNV	Gga1:NM_145929:exon10:c.C861T:p.T287T	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9624347	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	71	0	0	NA	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.477184456	2	0.8773739	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	78929730	12A2p6	cell line	sgMsh2	78929730	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	101	0	0	NA	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon3:c.A187G:p.T63A	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.32242193	3	0.9981378	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	109	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.950069954	1	0.996828	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	95	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.8989879	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	102	0	0	NA	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990621	TCG	synonymous	NA	NA	NA	NA
M5_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	210	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999974	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	143	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998997	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr15	82299042	12A2p6	cell line	sgMsh2	82299042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	101	0	0	NA	exonic	Wbp2nl	synonymous SNV	Wbp2nl:NM_029066:exon1:c.T36C:p.R12R	15qE1	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990096	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr15	83904335	12A2p6	cell line	sgMsh2	83904335	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	114	0	0	NA	exonic	Efcab6	synonymous SNV	"Efcab6:NM_001161629:exon4:c.C243A:p.T81T,Efcab6:NM_001161628:exon6:c.C693A:p.T231T,Efcab6:NM_029946:exon23:c.C2757A:p.T919T"	15qE2	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8537772	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	430	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	1.02E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	172	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999794	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	209	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9995087	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr15	85127511	12A2p6	cell line	sgMsh2	85127511	T	-	Deletion	Strelka2;Vardict	2	0.2283	92	0	0	NA	exonic	Smc1b	frameshift deletion	Smc1b:NM_080470:exon4:c.572delA:p.N191Mfs*1	15qE2	chr15-68084012-85707006	4	2	2	0.97	4.169990295	NA	1	0.981452355	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	73	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.558864679	2	0.9783606	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	412	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.833998059	1	0.9768266	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	89300838	12A2p6	cell line	sgMsh2	89300838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	112	0	0	NA	exonic	Sbf1	synonymous SNV	"Sbf1:NM_001081030:exon24:c.A3081G:p.T1027T,Sbf1:NM_001170561:exon24:c.A3081G:p.T1027T"	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.78241055	1	0.5843181	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.868389731	1	0.9726368	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	253	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	241	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999995	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	56	0	0	NA	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.735122	1	0.5235113	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	141	0	0	NA	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.778111591	2	0.5285166	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	167	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999729	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	79	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	2	1	1	0.9967192	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98543729	12A2p6	cell line	sgMsh2	98543729	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	176	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T1657G:p.L553V	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.765214714	2	0.7613771	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	350	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	2	1	1	2.25E-09	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98592746	12A2p6	cell line	sgMsh2	98592746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	194	0	0	NA	exonic	Adcy6	nonsynonymous SNV	"Adcy6:NM_001368413:exon20:c.A3302G:p.Q1101R,Adcy6:NM_007405:exon21:c.A3308G:p.Q1103R"	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999938	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	198	0	0	NA	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.795307427	1	0.5678953	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	98862972	12A2p6	cell line	sgMsh2	98862972	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	60	0	0	NA	exonic	Kmt2d	synonymous SNV	Kmt2d:NM_001033276:exon11:c.T2496A:p.P832P	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	1	1	0.9908067	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	263	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	1	0.786709509	2	0.6824089	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	91	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-85707064-102454328	5	3	2	0.97	4.169990295	NA	3	1	1	0.9982924	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	171	0	0	NA	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	273	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M5_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	203	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	236	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	49	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M5_p20	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	35	0	0	NA	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	303	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9956148	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	32	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9590175	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	141	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9981875	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	43	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9770849	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	311	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9999763	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	209	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999973	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	10284453	12A2p6	cell line	sgMsh2	10284453	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.217	104	0	0	NA	exonic	Emp2	nonsynonymous SNV	Emp2:NM_007929:exon5:c.A494G:p.Y165C	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9934675	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	10361310	12A2p6	cell line	sgMsh2	10361310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	197	0	0	NA	exonic	Tekt5	nonsynonymous SNV	Tekt5:NM_001291001:exon6:c.T1192C:p.C398R	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9959934	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	11319831	12A2p6	cell line	sgMsh2	11319831	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	225	0	0	NA	exonic	Tnfrsf17	nonsynonymous SNV	Tnfrsf17:NM_011608:exon3:c.C431A:p.P144Q	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999989	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	13685182	12A2p6	cell line	sgMsh2	13685182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	61	0	0	NA	exonic	Bfar	nonsynonymous SNV	"Bfar:NM_001177552:exon2:c.A47C:p.E16A,Bfar:NM_025976:exon2:c.A47C:p.E16A"	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9844286	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	157	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9998574	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	125	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997323	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	206	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9999604	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	114	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.09997896	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	175	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999825	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	162	0	0	NA	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999644	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M5_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	141	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998881	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	16436031	12A2p6	cell line	sgMsh2	16436031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	136	0	0	NA	exonic	Fgd4	nonsynonymous SNV	"Fgd4:NM_001301817:exon14:c.A2034G:p.I678M,Fgd4:NM_001301818:exon14:c.A1671G:p.I557M,Fgd4:NM_139232:exon14:c.A1671G:p.I557M"	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	154	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.999945	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	108	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9807937	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	52	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.722225123	2	7.82E-05	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	298	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9999491	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	138	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.8296991	1	0.8823032	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	98	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	90	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9981968	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	83	0	0	NA	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.84123	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	20600954	12A2p6	cell line	sgMsh2	20600954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	179	0	0	NA	exonic	Vwa5b2	stopgain	"Vwa5b2:NM_001384104:exon14:c.G1962A:p.W654X,Vwa5b2:NM_001384105:exon14:c.G1959A:p.W653X,Vwa5b2:NM_001144953:exon17:c.G1959A:p.W653X"	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999859	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	130	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997962	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	204	0	0	NA	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9999667	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	96	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.760915755	2	0.528638	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	71	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9949336	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	137	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.580359474	2	0.9996317	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	23077559	12A2p6	cell line	sgMsh2	23077559	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	614	0	0	NA	exonic	Kng1	nonsynonymous SNV	"Kng1:NM_001102411:exon9:c.G1111T:p.A371S,Kng1:NM_001102412:exon9:c.G1111T:p.A371S,Kng1:NM_023125:exon9:c.G1111T:p.A371S"	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	235	0	0	NA	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	25981189	12A2p6	cell line	sgMsh2	25981189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	272	0	0	NA	exonic	P3h2	nonsynonymous SNV	P3h2:NM_173379:exon8:c.A1253G:p.H418R	16qB1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.09452526	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	30550411	12A2p6	cell line	sgMsh2	30550411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	25	0	0	NA	exonic	Tmem44	nonsynonymous SNV	"Tmem44:NM_001357414:exon1:c.T89G:p.F30C,Tmem44:NM_001384248:exon1:c.T89G:p.F30C,Tmem44:NM_172614:exon1:c.T89G:p.F30C"	16qB2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9410786	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	31944927	12A2p6	cell line	sgMsh2	31944927	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	151	0	0	NA	exonic	Pigz	nonsynonymous SNV	Pigz:NM_172822:exon3:c.T802G:p.F268V	16qB2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.8296991	1	0.8881132	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	32626675	12A2p6	cell line	sgMsh2	32626675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	389	0	0	NA	exonic	Tfrc	nonsynonymous SNV	"Tfrc:NM_001357298:exon17:c.A1813G:p.T605A,Tfrc:NM_011638:exon17:c.A1813G:p.T605A"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.15E-09	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	32756512	12A2p6	cell line	sgMsh2	32756512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	334	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon4:c.A6385G:p.T2129A	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	4.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	173	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999805	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	332	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	4.34E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	211	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	121	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	35291578	12A2p6	cell line	sgMsh2	35291578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	108	0	0	NA	exonic	Adcy5	nonsynonymous SNV	Adcy5:NM_001012765:exon15:c.T2804C:p.V935A	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9991568	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	41	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.974511	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	153	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999419	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	36187978	12A2p6	cell line	sgMsh2	36187978	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	253	0	0	NA	exonic	Cstdc4	frameshift deletion	Cstdc4:NM_001082547:exon3:c.233delT:p.L79fs*0	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr16	36510002	12A2p6	cell line	sgMsh2	36510002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	182	0	0	NA	exonic	Casr	nonsynonymous SNV	Casr:NM_013803:exon4:c.G969T:p.K323N	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.999988	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	211	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr16	36721610	12A2p6	cell line	sgMsh2	36721610	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	28	0	0	NA	exonic	Ildr1	frameshift deletion	"Ildr1:NM_001285788:exon6:c.716delG:p.A241Rfs*11,Ildr1:NM_134109:exon6:c.716delG:p.A241Rfs*11"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	151	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999352	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	37535918	12A2p6	cell line	sgMsh2	37535918	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	407	0	0	NA	exonic	Gtf2e1	nonsynonymous SNV	"Gtf2e1:NM_001355727:exon2:c.G251A:p.G84E,Gtf2e1:NM_028812:exon2:c.G251A:p.G84E"	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.06E-09	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.138	43	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.593256351	2	0.008421241	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	43609614	12A2p6	cell line	sgMsh2	43609614	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	182	0	0	NA	exonic	Zbtb20	synonymous SNV	"Zbtb20:NM_181058:exon6:c.C268T:p.L90L,Zbtb20:NM_019778:exon8:c.C487T:p.L163L,Zbtb20:NM_001285805:exon10:c.C487T:p.L163L"	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.999988	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr16	43610242	12A2p6	cell line	sgMsh2	43610242	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Zbtb20	nonsynonymous SNV	"Zbtb20:NM_181058:exon6:c.G896T:p.G299V,Zbtb20:NM_019778:exon8:c.G1115T:p.G372V,Zbtb20:NM_001285805:exon10:c.G1115T:p.G372V"	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9983829	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	383	0	0	NA	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.21E-09	TCT	synonymous	NA	NA	NA	NA
M5_p20	chr16	44216308	12A2p6	cell line	sgMsh2	44216308	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	135	0	0	NA	exonic	Usf3	nonsynonymous SNV	Usf3:NM_001029889:exon8:c.C1150A:p.P384T	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998448	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	253	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9999035	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	48817292	12A2p6	cell line	sgMsh2	48817292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	175	0	0	NA	exonic	Retnlb	nonsynonymous SNV	Retnlb:NM_023881:exon2:c.T80C:p.F27S	16qB5	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.752317837	2	0.859389	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	440	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.996536	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	171	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999782	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	234	0	0	NA	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	266	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	99	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	358	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999998	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	198	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.988760585	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	505	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	59303332	12A2p6	cell line	sgMsh2	59303332	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	535	0	0	NA	exonic	Olfr203	frameshift deletion	Olfr203:NM_146486:exon1:c.178delT:p.F61Sfs*4	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.997358503	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	91	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9982924	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Vardict	2	0.167	35	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.717926164	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5_p20	chr16	62776550	12A2p6	cell line	sgMsh2	62776550	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	197	0	0	NA	exonic	Nsun3	synonymous SNV	Nsun3:NM_178925:exon3:c.C204A:p.A68A	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9948645	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	70	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M5_p20	chr16	65523559	12A2p6	cell line	sgMsh2	65523559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	232	0	0	NA	exonic	Pou1f1	nonsynonymous SNV	Pou1f1:NM_001362468:exon1:c.A109G:p.T37A	16qC1.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999992	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	434	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	66	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr16	85795776	12A2p6	cell line	sgMsh2	85795776	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	159	0	0	NA	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.G2532A:p.K844K	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.760915755	2	0.7527824	TCT	synonymous	TCT	11	TCTTCTTCTTC	NA
M5_p20	chr16	85866621	12A2p6	cell line	sgMsh2	85866621	T	-	Deletion	Mutect2;Vardict	2	0.079	145	0	0	NA	exonic	Adamts5	frameshift deletion	Adamts5:NM_011782:exon7:c.2224delA:p.S742Afs*7	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.339617766	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	161	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999624	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	101	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9936183	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	88729227	12A2p6	cell line	sgMsh2	88729227	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	80	0	0	NA	exonic	Krtap13-1	nonsynonymous SNV	Krtap13-1:NM_183189:exon1:c.G338T:p.G113V	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9968929	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	89897828	12A2p6	cell line	sgMsh2	89897828	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	205	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon4:c.G740A:p.G247E,Tiam1:NM_009384:exon4:c.G740A:p.G247E"	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.614751147	2	0.9999767	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	89898041	12A2p6	cell line	sgMsh2	89898041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	87	0	0	NA	exonic	Tiam1	stopgain	"Tiam1:NM_001145886:exon4:c.G527A:p.W176X,Tiam1:NM_009384:exon4:c.G527A:p.W176X"	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.627648024	2	0.999921	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.451	72	0	0	NA	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M5_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	236	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999994	CGC	synonymous	NA	NA	NA	NA
M5_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	220	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.709328246	2	0.9956032	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M5_p20	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	41	0	0	NA	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8228446	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	41	0	0	NA	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	0.69213241	2	0.000706582	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr16	94384051	12A2p6	cell line	sgMsh2	94384051	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	585	0	0	NA	exonic	Ttc3	synonymous SNV	Ttc3:NM_009441:exon2:c.T129G:p.L43L	16qC4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
M5_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	138	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998683	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	222	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr16	97951903	12A2p6	cell line	sgMsh2	97951903	T	-	Deletion	Strelka2;Vardict	2	0.1759	108	0	0	NA	exonic	Zbtb21	frameshift deletion	"Zbtb21:NM_001081684:exon2:c.1179delA:p.A394Lfs*30,Zbtb21:NM_001081685:exon3:c.1263delA:p.A422Lfs*30,Zbtb21:NM_175428:exon3:c.1263delA:p.A422Lfs*30"	16qC4	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr17	3533187	12A2p6	cell line	sgMsh2	3533187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	136	0	0	NA	exonic	Cldn20	nonsynonymous SNV	Cldn20:NM_001101560:exon1:c.G634A:p.A212T	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	5712447	12A2p6	cell line	sgMsh2	5712447	T	-	Deletion	Mutect2;Vardict	2	0.171	83	0	0	NA	exonic	Zdhhc14	frameshift deletion	Zdhhc14:NM_146073:exon4:c.625delT:p.Y211Ifs*9	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.735122	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	489	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	1.01E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	172	0	0	NA	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999794	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	13010572	12A2p6	cell line	sgMsh2	13010572	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	119	0	0	NA	exonic	Sod2	synonymous SNV	Sod2:NM_013671:exon3:c.G279A:p.G93G	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	GGG	synonymous	G	5	GGGGG	NA
M5_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	743	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.45998862	3	0.8393575	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;MuSe;Vardict	3	0.107	1078	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.45998862	3	0.9586505	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	78	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-14959781	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8391264	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	15527044	12A2p6	cell line	sgMsh2	15527044	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.571	9	0	0	NA	exonic	Pdcd2	nonsynonymous SNV	Pdcd2:NM_008799:exon1:c.G230A:p.R77H	17qA2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.8680473	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	129	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997848	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	364	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.58E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	18022702	12A2p6	cell line	sgMsh2	18022702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	133	0	0	NA	exonic	Fpr-rs4	stoploss	Fpr-rs4:NM_008041:exon1:c.T970C:p.X324Q	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.78241055	1	0.5350662	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	262	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.954368913	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr17	18597501	12A2p6	cell line	sgMsh2	18597501	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	927	0	0	NA	exonic	Vmn2r96	nonsynonymous SNV	"Vmn2r96:NM_001104547:exon5:c.T1339C:p.F447L,Vmn2r96:NM_001385081:exon6:c.T1915C:p.F639L"	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	18929203	12A2p6	cell line	sgMsh2	18929203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	746	0	0	NA	exonic	Vmn2r97	nonsynonymous SNV	"Vmn2r97:NM_001104549:exon3:c.T852G:p.I284M,Vmn2r97:NM_001385078:exon3:c.T852G:p.I284M"	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	218	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.846894936	1	0.969827	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.285	481	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	19069775	12A2p6	cell line	sgMsh2	19069775	A	G	SNV	Mutect2;MuSe;Vardict	3	0.098	307	0	0	NA	exonic	Vmn2r98	synonymous SNV	Vmn2r98:NM_001104550:exon5:c.A1572G:p.V524V	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.421297989	3	0.9977933	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	413	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.04E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	902	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.950069954	1	1	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.259	576	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	253	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	221	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9999841	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	221	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9999723	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20502548	12A2p6	cell line	sgMsh2	20502548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	252	0	0	NA	exonic	Vmn1r225	nonsynonymous SNV	Vmn1r225:NM_134194:exon1:c.A250G:p.I84V	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20687637	12A2p6	cell line	sgMsh2	20687637	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	214	0	0	NA	exonic	Vmn1r226	nonsynonymous SNV	Vmn1r226:NM_134191:exon1:c.G130T:p.D44Y	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9963137	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	276	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20846718	12A2p6	cell line	sgMsh2	20846718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	204	0	0	NA	exonic	Vmn1r230	synonymous SNV	Vmn1r230:NM_134197:exon1:c.A168G:p.K56K	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.822016	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr17	20994197	12A2p6	cell line	sgMsh2	20994197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	304	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.G490A:p.E164K	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.64E-08	TCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	257	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9999679	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	22548681	12A2p6	cell line	sgMsh2	22548681	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	682	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon6:c.C1834T:p.H612Y	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.59755531	2	1	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	590	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.69213241	2	3.29E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	23732620	12A2p6	cell line	sgMsh2	23732620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	27	0	0	NA	exonic	Pkmyt1	nonsynonymous SNV	Pkmyt1:NM_023058:exon2:c.G147T:p.K49N	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9468477	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	23919159	12A2p6	cell line	sgMsh2	23919159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	242	0	0	NA	exonic	Dcpp3	nonsynonymous SNV	Dcpp3:NM_001077633:exon4:c.A290G:p.Y97C	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	221	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.670637614	2	0.9996549	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	94	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9948906	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	24628994	12A2p6	cell line	sgMsh2	24628994	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	131	0	0	NA	exonic	Tsc2	frameshift deletion	"Tsc2:NM_001039363:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286713:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286714:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286716:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286718:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_001286720:exon5:c.429delT:p.F143Lfs*58,Tsc2:NM_011647:exon5:c.429delT:p.F143Lfs*58"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	166	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999714	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9317578	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	128	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.511576129	2	0.9903883	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M5_p20	chr17	25964418	12A2p6	cell line	sgMsh2	25964418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	76	0	0	NA	exonic	Capn15	nonsynonymous SNV	"Capn15:NM_015830:exon1:c.A1088G:p.N363S,Capn15:NM_001347334:exon3:c.A1286G:p.N429S"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9961382	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	76	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.8737013	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	35	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.778111591	1	0.7367425	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	27032945	12A2p6	cell line	sgMsh2	27032945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	98	0	0	NA	exonic	Ggnbp1	nonsynonymous SNV	"Ggnbp1:NM_027544:exon4:c.A893G:p.K298R,Ggnbp1:NM_001251881:exon5:c.A569G:p.K190R"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9374285	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	27562476	12A2p6	cell line	sgMsh2	27562476	T	C	SNV	Mutect2;Vardict	2	0.177	25	0	0	NA	exonic	Hmga1;Hmga1b	nonsynonymous SNV	Hmga1:NM_001166546:exon5:c.T305C:p.L102P	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.760915755	1	0.000991978	CTG	nonsynonymous	GAG	9	GAGGAGGAG	NA
M5_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	185	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999899	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	113	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.999485	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	117	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.846894936	1	0.9251492	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	70	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.808204305	1	0.7811257	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	154	0	0	NA	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.550266761	2	0.9997624	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	256	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.726524082	2	0.9947478	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	29169421	12A2p6	cell line	sgMsh2	29169421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	66	0	0	NA	exonic	Cpne5	nonsynonymous SNV	"Cpne5:NM_153166:exon13:c.A893G:p.Y298C,Cpne5:NM_001360239:exon14:c.A944G:p.Y315C"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	192	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999931	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	63	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9921835	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M5_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	187	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.64484386	2	0.999647	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	155	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.855492854	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.156	133	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.670637614	2	0.9857521	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	30813150	12A2p6	cell line	sgMsh2	30813150	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	207	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon82:c.A12443G:p.H4148R	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.502978211	2	0.9960308	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	116	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.705029287	2	0.9121891	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	207	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999969	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M5_p20	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	117	0	0	NA	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9995859	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M5_p20	chr17	32418211	12A2p6	cell line	sgMsh2	32418211	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	48	0	0	NA	exonic	Pglyrp2	nonsynonymous SNV	"Pglyrp2:NM_001271477:exon2:c.G842T:p.R281I,Pglyrp2:NM_001271479:exon2:c.G842T:p.R281I,Pglyrp2:NM_021319:exon2:c.G842T:p.R281I,Pglyrp2:NM_001271476:exon3:c.G842T:p.R281I,Pglyrp2:NM_001271478:exon3:c.G842T:p.R281I"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9824588	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	32418805	12A2p6	cell line	sgMsh2	32418805	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	122	0	0	NA	exonic	Pglyrp2	nonsynonymous SNV	"Pglyrp2:NM_001271477:exon2:c.A248C:p.E83A,Pglyrp2:NM_001271479:exon2:c.A248C:p.E83A,Pglyrp2:NM_021319:exon2:c.A248C:p.E83A,Pglyrp2:NM_001271476:exon3:c.A248C:p.E83A,Pglyrp2:NM_001271478:exon3:c.A248C:p.E83A"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.55456572	2	0.9989862	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	182	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8516013	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	33302335	12A2p6	cell line	sgMsh2	33302335	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	325	0	0	NA	exonic	Zfp955b	synonymous SNV	Zfp955b:NM_001142957:exon4:c.A777G:p.S259S	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	5.90E-09	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	65	0	0	NA	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9929857	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	33640763	12A2p6	cell line	sgMsh2	33640763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	41	0	0	NA	exonic	Pram1	synonymous SNV	Pram1:NM_001002842:exon2:c.A303G:p.E101E	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.974511	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	65	0	0	NA	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9707858	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	31	0	0	NA	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.956819	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	34135711	12A2p6	cell line	sgMsh2	34135711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	136	0	0	NA	exonic	H2-DMa	nonsynonymous SNV	"H2-DMa:NM_001360530:exon2:c.T41C:p.L14P,H2-DMa:NM_010386:exon2:c.T41C:p.L14P"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.670637614	2	0.9874339	CTG	nonsynonymous	GCT	8	GCTGCTGC	NA
M5_p20	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	45	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9794044	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	95	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986266	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	98	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	161	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999624	GCT	synonymous	G	5	GGGGG	NA
M5_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.213	19	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.8776099	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	49	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9833744	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	251	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.999979	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	103	0	0	NA	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9932378	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	35065580	12A2p6	cell line	sgMsh2	35065580	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	136	0	0	NA	exonic	Mpig6b	nonsynonymous SNV	"Mpig6b:NM_001033221:exon2:c.C386A:p.P129H,Mpig6b:NM_001191012:exon2:c.C386A:p.P129H"	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	35111808	12A2p6	cell line	sgMsh2	35111808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	149	0	0	NA	exonic	Ly6g5c	nonsynonymous SNV	Ly6g5c:NM_148947:exon3:c.T305C:p.M102T	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999277	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	87	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	44	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.09369961	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	44	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	35853626	12A2p6	cell line	sgMsh2	35853626	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	194	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon10:c.G4065T:p.K1355N	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999938	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	70	0	0	NA	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9117788	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2	2	0.101	159	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.434194866	3	0.7799972	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	157	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999533	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	36909539	12A2p6	cell line	sgMsh2	36909539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	174	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1346G:p.Y449C	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999815	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	144	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9996829	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	499	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr17	37726881	12A2p6	cell line	sgMsh2	37726881	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	393	0	0	NA	exonic	Olfr120	nonsynonymous SNV	Olfr120:NM_146631:exon1:c.G883A:p.A295T	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.378308398	3	2.90E-08	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	673	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M5_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.279	131	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M5_p20	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	225	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9970262	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	204	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999964	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	38335566	12A2p6	cell line	sgMsh2	38335566	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	593	0	0	NA	exonic	Olfr136	nonsynonymous SNV	Olfr136:NM_146807:exon1:c.G408C:p.M136I	17qB1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9999901	TGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	532	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.314	51	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.985067	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	53	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	389	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	1.14E-08	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr17	43478172	12A2p6	cell line	sgMsh2	43478172	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	116	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon12:c.C1751T:p.A584V	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995627	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	44	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9109235	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	43594855	12A2p6	cell line	sgMsh2	43594855	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.186	167	0	0	NA	exonic	Pla2g7	frameshift insertion	Pla2g7:NM_013737:exon4:c.306dupT:p.L104Ffs*3	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.799606386	NA	NA	TAT	frameshift	T	5	TTTTT	1
M5_p20	chr17	44991768	12A2p6	cell line	sgMsh2	44991768	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon4:c.G221T:p.G74V	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9683346	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	276	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9992261	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	45695545	12A2p6	cell line	sgMsh2	45695545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	62	0	0	NA	exonic	Mrpl14	nonsynonymous SNV	Mrpl14:NM_026732:exon2:c.G44A:p.S15N	17qB3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.627648024	2	0.8809699	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	141	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998881	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	19	0	0	NA	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9200387	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	110	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993936	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	162	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999644	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46540452	12A2p6	cell line	sgMsh2	46540452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	71	0	0	NA	exonic	Cul9	synonymous SNV	Cul9:NM_001081335:exon4:c.T1041C:p.P347P	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9949336	GAG	synonymous	AGC	8	AGCAGCAG	NA
M5_p20	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	152	0	0	NA	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999386	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46722293	12A2p6	cell line	sgMsh2	46722293	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	113	0	0	NA	exonic	Pex6	nonsynonymous SNV	Pex6:NM_145488:exon8:c.C1741T:p.P581S	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9902647	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	46919808	12A2p6	cell line	sgMsh2	46919808	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	108	0	0	NA	exonic	Prph2	nonsynonymous SNV	Prph2:NM_008938:exon2:c.T626C:p.V209A	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993237	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	47468586	12A2p6	cell line	sgMsh2	47468586	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.18	30	0	0	NA	exonic	AI661453	nonsynonymous SNV	AI661453:NM_145489:exon4:c.G3236C:p.G1079A	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.773812632	1	0.7396729	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.218	34	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9329462	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	50608351	12A2p6	cell line	sgMsh2	50608351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	176	0	0	NA	exonic	Plcl2	nonsynonymous SNV	Plcl2:NM_013880:exon2:c.C2387T:p.A796V	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9989523	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	50852534	12A2p6	cell line	sgMsh2	50852534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	144	0	0	NA	exonic	Tbc1d5	nonsynonymous SNV	"Tbc1d5:NM_001285991:exon15:c.A1244G:p.K415R,Tbc1d5:NM_001285993:exon15:c.A1244G:p.K415R,Tbc1d5:NM_028162:exon15:c.A1244G:p.K415R"	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9993429	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	52894041	12A2p6	cell line	sgMsh2	52894041	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	189	0	0	NA	exonic	Kcnh8	nonsynonymous SNV	Kcnh8:NM_001031811:exon9:c.A1502T:p.Q501L	17qC	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999918	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	56105023	12A2p6	cell line	sgMsh2	56105023	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	498	0	0	NA	exonic	Plin4	synonymous SNV	"Plin4:NM_001372234:exon5:c.C2601A:p.A867A,Plin4:NM_020568:exon6:c.C2007A:p.A669A"	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr17	56115591	12A2p6	cell line	sgMsh2	56115591	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	195	0	0	NA	exonic	Plin5	stopgain	"Plin5:NM_001077348:exon4:c.T344A:p.L115X,Plin5:NM_025874:exon5:c.T344A:p.L115X"	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.709328246	2	0.9904946	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	150	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.9998356	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	56620331	12A2p6	cell line	sgMsh2	56620331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	104	0	0	NA	exonic	Lonp1	nonsynonymous SNV	Lonp1:NM_028782:exon6:c.G921A:p.M307I	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.999159	GCA	nonsynonymous	GCCT	10	GCCTGCCTGC	NA
M5_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	281	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8734804	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	113	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.999485	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	129	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997848	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	57450038	12A2p6	cell line	sgMsh2	57450038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	65	0	0	NA	exonic	Adgre1	nonsynonymous SNV	"Adgre1:NM_001355722:exon17:c.T2294C:p.L765P,Adgre1:NM_001355723:exon17:c.T2246C:p.L749P,Adgre1:NM_010130:exon17:c.T2294C:p.L765P"	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9130557	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	325	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	5.90E-09	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	155	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999479	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	70	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.567462597	2	0.9713248	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr17	65850038	12A2p6	cell line	sgMsh2	65850038	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	39	0	0	NA	exonic	Ralbp1	nonsynonymous SNV	"Ralbp1:NM_001198949:exon10:c.C1859T:p.P620L,Ralbp1:NM_009067:exon10:c.C1859T:p.P620L"	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9716563	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	14	0	0	NA	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.8972936	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M5_p20	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	145	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9901938	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M5_p20	chr17	67631691	12A2p6	cell line	sgMsh2	67631691	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	85	0	0	NA	exonic	Lrrc30	nonsynonymous SNV	Lrrc30:NM_001033340:exon1:c.A893C:p.K298T	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.679235533	2	0.8791634	CTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	259	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.99997	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	67786098	12A2p6	cell line	sgMsh2	67786098	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	163	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon36:c.G5130A:p.L1710L	17qE1.1	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9998927	TGC	synonymous	NA	NA	NA	NA
M5_p20	chr17	71749467	12A2p6	cell line	sgMsh2	71749467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	44	0	0	NA	exonic	Pcare	stopgain	Pcare:NM_146082:exon1:c.G3214T:p.E1072X	17qE1.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	TCT	nonsynonymous	TGTT	9	TGTTTGTTT	NA
M5_p20	chr17	71902646	12A2p6	cell line	sgMsh2	71902646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	26	0	0	NA	exonic	Alk	synonymous SNV	Alk:NM_007439:exon16:c.A2802G:p.S934S	17qE1.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9440333	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Strelka2;Vardict	2	0.1875	48	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.806054825	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr17	72939421	12A2p6	cell line	sgMsh2	72939421	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	44	0	0	NA	exonic	Lbh	nonsynonymous SNV	Lbh:NM_029999:exon3:c.A295C:p.T99P	17qE1.3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.253	140	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998819	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	62	0	0	NA	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.991749	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	100	0	0	NA	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.989073	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	264	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	305	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	335	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	3.84E-09	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M5_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.98961	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	84560109	12A2p6	cell line	sgMsh2	84560109	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	259	0	0	NA	exonic	Plekhh2	nonsynonymous SNV	"Plekhh2:NM_001357986:exon6:c.C442A:p.L148I,Plekhh2:NM_001357987:exon6:c.C442A:p.L148I,Plekhh2:NM_177606:exon6:c.C442A:p.L148I"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	TCT	nonsynonymous	AGAATC	12	AGAATCAGAATC	NA
M5_p20	chr17	84672164	12A2p6	cell line	sgMsh2	84672164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	199	0	0	NA	exonic	Abcg5	nonsynonymous SNV	Abcg5:NM_031884:exon6:c.A767G:p.E256G	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999953	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	84691872	12A2p6	cell line	sgMsh2	84691872	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	201	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon3:c.T17G:p.I6S,Abcg8:NM_001347418:exon4:c.T395G:p.I132S,Abcg8:NM_026180:exon4:c.T398G:p.I133S"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.361112562	3	0.9999523	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	94	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	2	1	1	0.9985498	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	42	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9758313	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr17	86136436	12A2p6	cell line	sgMsh2	86136436	-	T	Insertion	Strelka2;Vardict	2	0.2222	81	0	0	NA	exonic	Srbd1	frameshift insertion	Srbd1:NM_030133:exon4:c.360dupA:p.P121Tfs*11	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	0.955228705	NA	NA	GGT	frameshift	T	8	TTTTTTTT	1
M5_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	103	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-15052617-87650787	4	2	2	0.97	4.169990295	NA	1	1	1	0.9991118	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.221	78	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	4	0.950069954	NA	NA	AGT	frameshift	NA	NA	NA	-4
M5_p20	chr17	87679880	12A2p6	cell line	sgMsh2	87679880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	545	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon3:c.T447C:p.G149G	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	2	0.361112562	3	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr17	87679899	12A2p6	cell line	sgMsh2	87679899	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	606	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon3:c.G466A:p.D156N	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	2	0.434194866	3	0.9999226	TGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	87717533	12A2p6	cell line	sgMsh2	87717533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	542	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon12:c.A1838G:p.N613S	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	1	0.270834421	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr17	87723354	12A2p6	cell line	sgMsh2	87723354	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	368	0	0	NA	exonic	Msh2	synonymous SNV	Msh2:NM_008628:exon16:c.G2658A:p.E886E	17qE4	chr17-87672302-87723786	18.50797381	15.50797381	3	0.97	4.169990295	NA	1	0.141865649	3	1	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	229	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	115	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	5063222	12A2p6	cell line	sgMsh2	5063222	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	70	0	0	NA	exonic	Svil	nonsynonymous SNV	"Svil:NM_001347449:exon8:c.C1280T:p.S427F,Svil:NM_153153:exon12:c.C2492T:p.S831F"	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.545967801	2	0.009965804	TCC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr18	5767349	12A2p6	cell line	sgMsh2	5767349	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	61	0	0	NA	exonic	Zeb1	nonsynonymous SNV	"Zeb1:NM_001360982:exon6:c.C1691T:p.P564L,Zeb1:NM_011546:exon6:c.C1859T:p.P620L,Zeb1:NM_001360981:exon7:c.C1808T:p.P603L"	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.537369883	2	0.9543876	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	318	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	8.18E-09	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M5_p20	chr18	7222616	12A2p6	cell line	sgMsh2	7222616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	217	0	0	NA	exonic	Armc4	nonsynonymous SNV	Armc4:NM_001357492:exon13:c.C1652T:p.T551M	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999982	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.143	40	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.614751147	2	0.7165756	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	191	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999927	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	230	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999991	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.543	156	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	2	1	1	0.9999506	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	20591962	12A2p6	cell line	sgMsh2	20591962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	290	0	0	NA	exonic	Dsg2	nonsynonymous SNV	Dsg2:NM_007883:exon10:c.T1424C:p.V475A	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.760915755	2	0.9604729	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	194	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.533070924	2	0.9997808	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	51	0	0	NA	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	45	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9794044	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	32	0	0	NA	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.924276199	1	0.9197682	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	69	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.96726579	1	0.9890767	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	74	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.995695	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.838297018	1	0.09391302	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	82	0	0	NA	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.812503264	1	0.7945996	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	47	0	0	NA	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9814936	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	36992676	12A2p6	cell line	sgMsh2	36992676	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	313	0	0	NA	exonic	Pcdha8	synonymous SNV	Pcdha8:NM_201243:exon1:c.T210C:p.G70G	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.898482445	1	0.999891	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	281	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999999	ATT	synonymous	ATT	9	ATTATTATT	NA
M5_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	254	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.267	44	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9782749	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	243	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.950069954	1	0.9999847	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37343315	12A2p6	cell line	sgMsh2	37343315	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	505	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.A1503G:p.I501M	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.438493825	3	0.9984116	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	214	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.803905345	1	0.6733572	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	74	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.995695	ATT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.78241055	1	0.6771232	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr18	37497762	12A2p6	cell line	sgMsh2	37497762	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	122	0	0	NA	exonic	Pcdhb19	nonsynonymous SNV	Pcdhb19:NM_053144:exon1:c.G609T:p.E203D	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996847	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	261	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	2	1	1	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	37820925	12A2p6	cell line	sgMsh2	37820925	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	150	0	0	NA	exonic	Pcdhgc5	synonymous SNV	Pcdhgc5:NM_033583:exon1:c.A1251C:p.T417T	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.45998862	2	0.7279184	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	309	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.958667872	1	0.9999995	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	43	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9770849	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	119	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996287	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	137	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998609	GTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr18	41991824	12A2p6	cell line	sgMsh2	41991824	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.322	79	0	0	NA	exonic	Grxcr2	frameshift insertion	Grxcr2:NM_001033426:exon2:c.517dupC:p.L173Pfs*18	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	CAG	frameshift	G	5	GGGGG	1
M5_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	103	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.769513673	1	6.17E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	42250855	12A2p6	cell line	sgMsh2	42250855	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	272	0	0	NA	exonic	Lars	nonsynonymous SNV	Lars:NM_134137:exon4:c.T274G:p.L92V	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	42322165	12A2p6	cell line	sgMsh2	42322165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	129	0	0	NA	exonic	Rbm27	nonsynonymous SNV	Rbm27:NM_172626:exon12:c.T1982C:p.V661A	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997848	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	163	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.902781404	1	0.9964316	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	43969320	12A2p6	cell line	sgMsh2	43969320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	165	0	0	NA	exonic	Spink5	nonsynonymous SNV	Spink5:NM_001081180:exon4:c.A238G:p.N80D	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999698	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	44342437	12A2p6	cell line	sgMsh2	44342437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	122	0	0	NA	exonic	Myot	synonymous SNV	Myot:NM_001033621:exon4:c.A624G:p.S208S	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996847	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	159	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.588957392	2	0.9998891	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	44871502	12A2p6	cell line	sgMsh2	44871502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	272	0	0	NA	exonic	Ythdc2	synonymous SNV	Ythdc2:NM_001163013:exon24:c.T3342C:p.T1114T	18qB3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.69213241	2	0.9997783	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	210	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.717926164	2	0.9898528	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.3086	81	0	0	NA	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M5_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	316	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	9.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	47248715	12A2p6	cell line	sgMsh2	47248715	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	80	0	0	NA	exonic	Sema6a	nonsynonymous SNV	"Sema6a:NM_001311097:exon18:c.C2599A:p.P867T,Sema6a:NM_018744:exon19:c.C2764A:p.P922T"	18qC	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9968929	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	49877917	12A2p6	cell line	sgMsh2	49877917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	330	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon18:c.T3140C:p.V1047A	18qD1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.954368913	1	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	182	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.999988	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	52871437	12A2p6	cell line	sgMsh2	52871437	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	117	0	0	NA	exonic	Sncaip	nonsynonymous SNV	"Sncaip:NM_001199151:exon5:c.G1135A:p.E379K,Sncaip:NM_001199153:exon5:c.G1135A:p.E379K,Sncaip:NM_001199154:exon5:c.G1135A:p.E379K,Sncaip:NM_026408:exon5:c.G1135A:p.E379K"	18qD1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.670637614	2	0.972288	TGA	nonsynonymous	TGAA	8	TGAATGAA	NA
M5_p20	chr18	54987755	12A2p6	cell line	sgMsh2	54987755	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	81	0	0	NA	exonic	Zfp608	synonymous SNV	Zfp608:NM_175751:exon2:c.C759T:p.G253G	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9970573	CGC	synonymous	C	5	CCCCC	NA
M5_p20	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	121	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.640544901	2	0.9918327	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	94	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9985498	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	126	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997465	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	57389278	12A2p6	cell line	sgMsh2	57389278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	110	0	0	NA	exonic	Prrc1	nonsynonymous SNV	Prrc1:NM_028447:exon9:c.T1181C:p.V394A	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.537369883	2	0.9963131	GTG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr18	60390684	12A2p6	cell line	sgMsh2	60390684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	277	0	0	NA	exonic	Iigp1	synonymous SNV	"Iigp1:NM_001146275:exon3:c.A873G:p.L291L,Iigp1:NM_021792:exon3:c.A873G:p.L291L"	18qD3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999999	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr18	61019829	12A2p6	cell line	sgMsh2	61019829	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	79	0	0	NA	exonic	Cdx1	nonsynonymous SNV	Cdx1:NM_009880:exon3:c.C704A:p.T235N	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9967192	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	61575445	12A2p6	cell line	sgMsh2	61575445	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	122	0	0	NA	exonic	Csnk1a1	synonymous SNV	"Csnk1a1:NM_001357500:exon5:c.C492T:p.Y164Y,Csnk1a1:NM_146087:exon5:c.C492T:p.Y164Y,Csnk1a1:NM_001357498:exon6:c.C576T:p.Y192Y,Csnk1a1:NM_001357499:exon6:c.C576T:p.Y192Y"	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996847	ACA	synonymous	NA	NA	NA	NA
M5_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	93	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9984686	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	63050579	12A2p6	cell line	sgMsh2	63050579	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	105	0	0	NA	exonic	Piezo2	synonymous SNV	Piezo2:NM_001039485:exon37:c.G5253A:p.Q1751Q	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.821101182	1	0.8324967	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr18	63796180	12A2p6	cell line	sgMsh2	63796180	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	106	0	0	NA	exonic	Wdr7	nonsynonymous SNV	"Wdr7:NM_001360837:exon18:c.T2990G:p.L997R,Wdr7:NM_001014981:exon19:c.T3086G:p.L1029R"	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9992458	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	123	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.941472036	1	0.997519	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	96	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9986994	TTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	57	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9891899	TTT	synonymous	NA	NA	NA	NA
M5_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	187	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999909	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	71682179	12A2p6	cell line	sgMsh2	71682179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	122	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon6:c.G1123A:p.D375N	18qE2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996847	TCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	74714856	12A2p6	cell line	sgMsh2	74714856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	59	0	0	NA	exonic	Myo5b	nonsynonymous SNV	Myo5b:NM_201600:exon24:c.A3164G:p.N1055S	18qE2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9902963	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	139	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.915678281	1	0.9960805	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	55	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.984461626	1	0.9845667	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	115	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9995382	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	82624244	12A2p6	cell line	sgMsh2	82624244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	88	0	0	NA	exonic	Zfp236	nonsynonymous SNV	"Zfp236:NM_177832:exon19:c.T3376C:p.Y1126H,Zfp236:NM_001374229:exon20:c.T3520C:p.Y1174H"	18qE3	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9979894	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	149	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	0.812503264	1	0.7872402	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	121	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996671	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	111	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4271293	12A2p6	cell line	sgMsh2	4271293	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	254	0	0	NA	exonic	Ankrd13d	nonsynonymous SNV	Ankrd13d:NM_026720:exon12:c.G1274A:p.S425N	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4281028	12A2p6	cell line	sgMsh2	4281028	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	223	0	0	NA	exonic	Ankrd13d	synonymous SNV	Ankrd13d:NM_026720:exon5:c.G450A:p.R150R	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr19	4623890	12A2p6	cell line	sgMsh2	4623890	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	121	0	0	NA	exonic	Rce1	frameshift deletion	"Rce1:NM_001368713:exon5:c.315delT:p.H106Tfs*124,Rce1:NM_001368714:exon5:c.315delT:p.H106Tfs*44,Rce1:NM_001368715:exon5:c.315delT:p.H106Tfs*44,Rce1:NM_001368712:exon6:c.627delT:p.H210Tfs*124,Rce1:NM_023131:exon6:c.627delT:p.H210Tfs*44"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	68	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	147	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	172	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	343	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	476	0	0	NA	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	225	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5279489	12A2p6	cell line	sgMsh2	5279489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	121	0	0	NA	exonic	Sf3b2	nonsynonymous SNV	"Sf3b2:NM_001362454:exon17:c.T2155C:p.F719L,Sf3b2:NM_030109:exon17:c.T2158C:p.F720L"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5336070	12A2p6	cell line	sgMsh2	5336070	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	374	0	0	NA	exonic	Catsper1	frameshift deletion	Catsper1:NM_139301:exon1:c.330delC:p.A113Lfs*181	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr19	5607818	12A2p6	cell line	sgMsh2	5607818	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	382	0	0	NA	exonic	Kat5	stopgain	"Kat5:NM_001362370:exon5:c.C105A:p.Y35X,Kat5:NM_001199248:exon6:c.C681A:p.Y227X,Kat5:NM_001199249:exon6:c.C681A:p.Y227X,Kat5:NM_001362371:exon6:c.C105A:p.Y35X,Kat5:NM_001199247:exon7:c.C582A:p.Y194X,Kat5:NM_001362372:exon7:c.C837A:p.Y279X,Kat5:NM_178637:exon8:c.C738A:p.Y246X"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5660776	12A2p6	cell line	sgMsh2	5660776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	50	0	0	NA	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon2:c.C205T:p.R69C,Sipa1:NM_001164568:exon2:c.C205T:p.R69C,Sipa1:NM_001164480:exon3:c.C205T:p.R69C,Sipa1:NM_011379:exon3:c.C205T:p.R69C,Sipa1:NM_001164481:exon4:c.C205T:p.R69C"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CGG	nonsynonymous	GGGCAC	15	GGGCACGGGCACGGG	NA
M5_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	230	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	41	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	65	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M5_p20	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	61	0	0	NA	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	116	0	0	NA	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr19	6071366	12A2p6	cell line	sgMsh2	6071366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	181	0	0	NA	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon4:c.G625A:p.V209M	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	2	9.69E-08	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	39	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9716563	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	6832035	12A2p6	cell line	sgMsh2	6832035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	105	0	0	NA	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon11:c.T1250C:p.L417P	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.584658433	2	0.996425	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	6853563	12A2p6	cell line	sgMsh2	6853563	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	125	0	0	NA	exonic	Ccdc88b	synonymous SNV	Ccdc88b:NM_001081291:exon14:c.C2010A:p.A670A	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.816802223	1	0.8149564	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr19	6906879	12A2p6	cell line	sgMsh2	6906879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	121	0	0	NA	exonic	Prdx5	synonymous SNV	Prdx5:NM_012021:exon6:c.C600T:p.C200C	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.627648024	2	0.9948218	TGC	synonymous	NA	NA	NA	NA
M5_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	73	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.545967801	2	0.9787928	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	6927164	12A2p6	cell line	sgMsh2	6927164	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	145	0	0	NA	exonic	Kcnk4	nonsynonymous SNV	Kcnk4:NM_008431:exon6:c.T731A:p.L244Q	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.894183486	1	0.9918247	TAG	nonsynonymous	TAGGC	10	TAGGCTAGGC	NA
M5_p20	chr19	6993489	12A2p6	cell line	sgMsh2	6993489	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.155	333	0	0	NA	exonic	Nudt22	synonymous SNV	Nudt22:NM_026675:exon5:c.C712T:p.L238L	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.666338655	2	0.999998	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr19	7014089	12A2p6	cell line	sgMsh2	7014089	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	43	0	0	NA	exonic	Fermt3	synonymous SNV	"Fermt3:NM_001362399:exon5:c.C654A:p.S218S,Fermt3:NM_153795:exon5:c.C654A:p.S218S"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.937173077	1	0.9506069	GGG	synonymous	CAGG	8	CAGGCAGG	NA
M5_p20	chr19	7096153	12A2p6	cell line	sgMsh2	7096153	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	74	0	0	NA	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.T1028G:p.V343G	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.662039696	2	0.8721131	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	496	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	65	0	0	NA	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.889884527	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr19	8820799	12A2p6	cell line	sgMsh2	8820799	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	84	0	0	NA	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon1:c.C518A:p.A173D	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9975004	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	8847699	12A2p6	cell line	sgMsh2	8847699	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	151	0	0	NA	exonic	Bscl2	synonymous SNV	"Bscl2:NM_001290823:exon8:c.C846T:p.H282H,Bscl2:NM_008144:exon8:c.C1026T:p.H342H,Bscl2:NM_001136064:exon9:c.C1026T:p.H342H"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9999352	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr19	8931147	12A2p6	cell line	sgMsh2	8931147	C	-	Deletion	Mutect2;Vardict	2	0.121	120	0	0	NA	exonic	Eml3	frameshift deletion	"Eml3:NM_001374671:exon3:c.295delC:p.P100Lfs*2,Eml3:NM_144872:exon3:c.298delC:p.P101Lfs*2"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.520174047	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr19	8951168	12A2p6	cell line	sgMsh2	8951168	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	143	0	0	NA	exonic	Mta2	synonymous SNV	Mta2:NM_011842:exon17:c.T1725C:p.N575N	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9998997	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr19	8959238	12A2p6	cell line	sgMsh2	8959238	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	85	0	0	NA	exonic	Tut1	nonsynonymous SNV	Tut1:NM_197993:exon3:c.T425A:p.V142E	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.588957392	2	0.9851151	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	9006308	12A2p6	cell line	sgMsh2	9006308	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	343	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A4955C:p.N1652T	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.838297018	1	0.9777869	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	42	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9758313	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	346	0	0	NA	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	2	0.99276	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	270	0	0	NA	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.610452187	2	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	10535245	12A2p6	cell line	sgMsh2	10535245	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	49	0	0	NA	exonic	Cpsf7	nonsynonymous SNV	"Cpsf7:NM_001164272:exon6:c.C665A:p.A222D,Cpsf7:NM_172302:exon6:c.C692A:p.A231D"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.356813603	3	0.7833167	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	10711334	12A2p6	cell line	sgMsh2	10711334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	275	0	0	NA	exonic	Vps37c	nonsynonymous SNV	"Vps37c:NM_001361959:exon3:c.A5G:p.K2R,Vps37c:NM_001361963:exon3:c.A5G:p.K2R,Vps37c:NM_001361958:exon4:c.A329G:p.K110R,Vps37c:NM_001361960:exon4:c.A329G:p.K110R,Vps37c:NM_001361961:exon4:c.A329G:p.K110R,Vps37c:NM_001361962:exon4:c.A329G:p.K110R,Vps37c:NM_001361964:exon4:c.A329G:p.K110R,Vps37c:NM_181403:exon4:c.A329G:p.K110R"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.408401111	3	0.9992655	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	10848751	12A2p6	cell line	sgMsh2	10848751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	133	0	0	NA	exonic	Slc15a3	nonsynonymous SNV	Slc15a3:NM_023044:exon2:c.T805C:p.F269L	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.627648024	2	0.9973209	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	236	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.640544901	2	0.9999774	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	197	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9999947	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr19	11333215	12A2p6	cell line	sgMsh2	11333215	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	273	0	0	NA	exonic	Ms4a7	nonsynonymous SNV	"Ms4a7:NM_001025610:exon2:c.G139T:p.V47F,Ms4a7:NM_001276398:exon2:c.G238T:p.V80F,Ms4a7:NM_027836:exon2:c.G139T:p.V47F"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.41270007	3	0.9985266	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	12680523	12A2p6	cell line	sgMsh2	12680523	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	454	0	0	NA	exonic	Olfr1443	synonymous SNV	Olfr1443:NM_146698:exon3:c.A414C:p.T138T	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.752317837	2	0.9990326	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	552	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	516	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr19	13165574	12A2p6	cell line	sgMsh2	13165574	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	285	0	0	NA	exonic	Olfr1461	nonsynonymous SNV	Olfr1461:NM_146302:exon1:c.G559A:p.A187T	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.773812632	2	0.883795	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	13454435	12A2p6	cell line	sgMsh2	13454435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	334	0	0	NA	exonic	Olfr1472	synonymous SNV	Olfr1472:NM_146690:exon1:c.T81C:p.I27I	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.752317837	2	0.9912821	TAA	synonymous	AATA	10	AATAAATAAA	NA
M5_p20	chr19	13479544	12A2p6	cell line	sgMsh2	13479544	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	724	0	0	NA	exonic	Olfr1475	nonsynonymous SNV	Olfr1475:NM_146301:exon1:c.T653A:p.L218H	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.421297989	3	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	827	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.726524082	2	2.90E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	13586087	12A2p6	cell line	sgMsh2	13586087	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	1062	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.C782A:p.P261H	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.528771965	2	1	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.134	317	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.576060515	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	549	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.657740737	2	1.04E-09	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	13814832	12A2p6	cell line	sgMsh2	13814832	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.426	191	0	0	NA	exonic	Olfr1499	frameshift insertion	Olfr1499:NM_146796:exon1:c.756dupT:p.G253Wfs*19	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	NA	NA	CCA	frameshift	A	8	AAAAAAAA	1
M5_p20	chr19	13838377	12A2p6	cell line	sgMsh2	13838377	T	-	Deletion	Mutect2;Vardict	2	0.16	359	0	0	NA	exonic	Olfr1501	frameshift deletion	Olfr1501:NM_146633:exon1:c.795delA:p.K265Nfs*15	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.687833451	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5_p20	chr19	14596822	12A2p6	cell line	sgMsh2	14596822	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	176	0	0	NA	exonic	Tle4	synonymous SNV	"Tle4:NM_001302947:exon2:c.T78C:p.F26F,Tle4:NM_001302950:exon2:c.T78C:p.F26F,Tle4:NM_001302951:exon2:c.T72C:p.F24F,Tle4:NM_011600:exon2:c.T78C:p.F26F"	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.558864679	2	0.9999573	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	249	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9999997	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	433	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.726524082	2	0.9999469	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.756616796	1	0.6344263	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr19	18854204	12A2p6	cell line	sgMsh2	18854204	A	-	Deletion	Strelka2;Vardict	2	0.2082	245	0	0	NA	exonic	Trpm6	frameshift deletion	Trpm6:NM_153417:exon26:c.4432delA:p.K1480Sfs*78	19qB	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.895043278	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	331	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	4.53E-09	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	55	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9879589	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	26672713	12A2p6	cell line	sgMsh2	26672713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	285	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon14:c.A2084G:p.D695G	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.36971048	3	0.9999986	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	325	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	5.90E-09	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	279	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	0.945770995	1	0.9999948	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	30578787	12A2p6	cell line	sgMsh2	30578787	-	T	Insertion	Mutect2;Vardict	2	0.174	139	0	0	NA	exonic	Prkg1	frameshift insertion	"Prkg1:NM_001013833:exon15:c.1757dupA:p.N586Kfs*3,Prkg1:NM_011160:exon15:c.1802dupA:p.N601Kfs*3"	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.748018878	NA	NA	CAT	frameshift	T	5	TTTTT	1
M5_p20	chr19	31585637	12A2p6	cell line	sgMsh2	31585637	G	-	Deletion	Mutect2;Vardict	2	0.093	209	0	0	NA	exonic	Prkg1	frameshift deletion	"Prkg1:NM_001013833:exon2:c.363delC:p.V122Wfs*33,Prkg1:NM_011160:exon2:c.408delC:p.V137Wfs*33"	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.399803193	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5_p20	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	109	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.726524082	2	0.806059	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	575	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.640544901	2	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr19	32019026	12A2p6	cell line	sgMsh2	32019026	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	180	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon13:c.T1071C:p.P357P	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.696431369	2	0.9923414	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	472	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.726524082	2	0.9999807	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	433	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.666338655	2	2.57E-08	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	34112952	12A2p6	cell line	sgMsh2	34112952	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	391	0	0	NA	exonic	Lipm	frameshift deletion	Lipm:NM_023903:exon5:c.532delA:p.K179Rfs*23	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.773812632	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5_p20	chr19	34620011	12A2p6	cell line	sgMsh2	34620011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	348	0	0	NA	exonic	Ifit1bl2	synonymous SNV	"Ifit1bl2:NM_001362130:exon2:c.C204T:p.Y68Y,Ifit1bl2:NM_053217:exon3:c.C204T:p.Y68Y"	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	2.40E-09	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	119	0	0	NA	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9996287	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr19	36089200	12A2p6	cell line	sgMsh2	36089200	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	467	0	0	NA	exonic	Rpp30	nonsynonymous SNV	Rpp30:NM_019428:exon5:c.A332C:p.K111T	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.709328246	2	0.9999979	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	139	0	0	NA	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9998753	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr19	36440012	12A2p6	cell line	sgMsh2	36440012	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	517	0	0	NA	exonic	Pcgf5	nonsynonymous SNV	"Pcgf5:NM_001368690:exon6:c.G339T:p.K113N,Pcgf5:NM_001368691:exon6:c.G339T:p.K113N,Pcgf5:NM_001368692:exon6:c.G339T:p.K113N,Pcgf5:NM_001368693:exon6:c.G339T:p.K113N,Pcgf5:NM_029508:exon6:c.G339T:p.K113N"	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.533070924	2	3.76E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	170	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.902781404	1	0.9970219	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	353	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.545967801	2	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	38097545	12A2p6	cell line	sgMsh2	38097545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	43	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T419C:p.I140T	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.631946983	2	0.710267	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	38097601	12A2p6	cell line	sgMsh2	38097601	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	35	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.C475A:p.L159M	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.636245942	2	0.6034903	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	378	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	1.27E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	250	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	40337027	12A2p6	cell line	sgMsh2	40337027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	117	0	0	NA	exonic	Sorbs1	synonymous SNV	"Sorbs1:NM_001034964:exon12:c.A1032T:p.A344A,Sorbs1:NM_001034962:exon14:c.A1122T:p.A374A,Sorbs1:NM_001034963:exon14:c.A1152T:p.A384A,Sorbs1:NM_009166:exon15:c.A1032T:p.A344A,Sorbs1:NM_178362:exon20:c.A1794T:p.A598A"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.524473006	2	0.994308	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	298	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.881286609	1	0.9992867	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.236	49	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9833744	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	85	0	0	NA	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.494380293	2	0.9440279	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	42759764	12A2p6	cell line	sgMsh2	42759764	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	62	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon16:c.A1697C:p.N566T,Hps1:NM_001346703:exon17:c.A1721C:p.N574T,Hps1:NM_019424:exon17:c.A1697C:p.N566T"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.991749	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	84	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9975004	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	47	0	0	NA	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9814936	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	44012394	12A2p6	cell line	sgMsh2	44012394	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	338	0	0	NA	exonic	Cyp2c23	synonymous SNV	"Cyp2c23:NM_001001446:exon7:c.C1050A:p.P350P,Cyp2c23:NM_001167905:exon7:c.C1050A:p.P350P"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.425596948	3	0.997796	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	803	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.606153228	2	1	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	145	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9999101	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	144	0	0	NA	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.485782375	2	0.953111	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	89	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.649142819	2	0.9494178	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	77	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	0.945770995	1	0.9876023	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9912904	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	145	0	0	NA	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.584658433	2	0.9997575	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	385	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.760915755	2	0.9909564	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	326	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	5.64E-09	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	47651833	12A2p6	cell line	sgMsh2	47651833	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	221	0	0	NA	exonic	Col17a1	nonsynonymous SNV	"Col17a1:NM_001290825:exon44:c.C3092T:p.P1031L,Col17a1:NM_007732:exon44:c.C3092T:p.P1031L"	19qD1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.924276199	1	0.9998034	GGG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	137	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.786709509	1	0.5685201	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	298	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.580359474	2	5.77E-09	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr19	52264739	12A2p6	cell line	sgMsh2	52264739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	145	0	0	NA	exonic	Ins1	nonsynonymous SNV	Ins1:NM_008386:exon2:c.T116C:p.L39P	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.842595977	1	0.9305947	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	52264767	12A2p6	cell line	sgMsh2	52264767	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.156	113	0	0	NA	exonic	Ins1	synonymous SNV	Ins1:NM_008386:exon2:c.C144T:p.F48F	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.670637614	2	0.9673284	TCT	synonymous	CTT	8	CTTCTTCT	NA
M5_p20	chr19	53909279	12A2p6	cell line	sgMsh2	53909279	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	92	0	0	NA	exonic	Pdcd4	nonsynonymous SNV	"Pdcd4:NM_001168491:exon3:c.T211C:p.S71P,Pdcd4:NM_001168492:exon3:c.T211C:p.S71P,Pdcd4:NM_011050:exon3:c.T211C:p.S71P"	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.45998862	2	0.7757578	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	54046882	12A2p6	cell line	sgMsh2	54046882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	114	0	0	NA	exonic	Adra2a	nonsynonymous SNV	Adra2a:NM_007417:exon1:c.C668A:p.P223H	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	0.9995124	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	201	0	0	NA	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.391205275	3	0.9987605	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	206	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.649142819	2	0.9998229	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	130	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	3	1	1	0.9997962	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M5_p20	chr19	58787617	12A2p6	cell line	sgMsh2	58787617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	239	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon4:c.A379G:p.T127A,1700019N19Rik:NM_001368689:exon4:c.A379G:p.T127A,1700019N19Rik:NM_026208:exon4:c.A403G:p.T135A"	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.545967801	2	0.9999913	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	284	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.614751147	2	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	283	0	0	NA	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	1	0.262236503	3	1.00E-09	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Strelka2;Vardict	2	0.2985	67	0	0	NA	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	311	0	0	NA	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.97	4.169990295	NA	2	1	1	1.15E-08	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M5_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	158	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999557	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	155	0	0	NA	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999479	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	248	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.769513673	2	0.8695168	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	12174185	12A2p6	cell line	sgMsh2	12174185	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	466	0	0	NA	exonic	Itga8	synonymous SNV	Itga8:NM_001001309:exon23:c.C2337T:p.N779N	2qA1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	2.17E-09	TGT	synonymous	NA	NA	NA	NA
M5_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	379	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.26E-09	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	90	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr2	17443819	12A2p6	cell line	sgMsh2	17443819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	156	0	0	NA	exonic	Nebl	nonsynonymous SNV	Nebl:NM_001362722:exon6:c.T376C:p.Y126H	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999506	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	63	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9921835	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	21827331	12A2p6	cell line	sgMsh2	21827331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	118	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.C3241T:p.R1081C	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9886344	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	186	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999904	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	22834366	12A2p6	cell line	sgMsh2	22834366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	281	0	0	NA	exonic	Apbb1ip	synonymous SNV	Apbb1ip:NM_019456:exon6:c.C651T:p.D217D	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999999	ACT	synonymous	NA	NA	NA	NA
M5_p20	chr2	23511388	12A2p6	cell line	sgMsh2	23511388	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	220	0	0	NA	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon11:c.A882C:p.E294D,Spopl:NM_029773:exon11:c.A1107C:p.E369D,Spopl:NM_001165997:exon12:c.A882C:p.E294D"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.977414	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	24443096	12A2p6	cell line	sgMsh2	24443096	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	62	0	0	NA	exonic	Pax8	frameshift deletion	Pax8:NM_011040:exon4:c.233delG:p.G78Afs*14	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5_p20	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	106	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	72	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9952012	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	153	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999419	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	55	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9879589	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	44	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9782749	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	76	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.59755531	2	0.9684278	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	148	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999236	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	26473734	12A2p6	cell line	sgMsh2	26473734	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	exonic	Notch1	nonsynonymous SNV	Notch1:NM_008714:exon17:c.A2687C:p.Q896P	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.726524082	2	0.7378616	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	26988391	12A2p6	cell line	sgMsh2	26988391	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	569	0	0	NA	exonic	Adamts13	synonymous SNV	"Adamts13:NM_001001322:exon15:c.C1773T:p.V591V,Adamts13:NM_001290463:exon15:c.C1773T:p.V591V,Adamts13:NM_001290464:exon15:c.C1773T:p.V591V,Adamts13:NM_001290465:exon15:c.C1773T:p.V591V"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	TCA	synonymous	NA	NA	NA	NA
M5_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	140	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.9151077	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	362	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.78241055	2	0.8850125	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	62	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.991749	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.158	72	0	0	NA	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.679235533	2	0.8123903	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M5_p20	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	79	0	0	NA	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	30083129	12A2p6	cell line	sgMsh2	30083129	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	152	0	0	NA	exonic	Pkn3	frameshift deletion	Pkn3:NM_153805:exon8:c.1050delT:p.F351Lfs*28	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr2	30103420	12A2p6	cell line	sgMsh2	30103420	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	84	0	0	NA	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon11:c.A1634T:p.E545V,Zer1:NM_178694:exon11:c.A1673T:p.E558V"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.558864679	2	0.9896492	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9975004	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	63	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.9921835	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	30368944	12A2p6	cell line	sgMsh2	30368944	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.166	30	0	0	NA	exonic	Miga2	nonsynonymous SNV	"Miga2:NM_001242407:exon3:c.C164T:p.T55I,Miga2:NM_001378906:exon3:c.C164T:p.T55I,Miga2:NM_001378907:exon3:c.C164T:p.T55I,Miga2:NM_175392:exon3:c.C164T:p.T55I"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.713627205	1	0.6248908	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	238	0	0	NA	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999994	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	69	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.9943529	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	31615612	12A2p6	cell line	sgMsh2	31615612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	61	0	0	NA	exonic	Fubp3	nonsynonymous SNV	"Fubp3:NM_001363080:exon17:c.A1616G:p.Q539R,Fubp3:NM_001363081:exon17:c.A1217G:p.Q406R,Fubp3:NM_001033389:exon18:c.A1688G:p.Q563R,Fubp3:NM_001290548:exon18:c.A1688G:p.Q563R,Fubp3:NM_001363079:exon18:c.A1685G:p.Q562R"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.752317837	1	7.25E-06	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	197	0	0	NA	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999947	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	316	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	9.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9713348	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	113	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9656053	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	62	0	0	NA	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.991749	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	76	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9961382	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	229	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9979404	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	65	0	0	NA	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.9929857	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	74	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M5_p20	chr2	35715376	12A2p6	cell line	sgMsh2	35715376	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	72	0	0	NA	exonic	Dab2ip	nonsynonymous SNV	"Dab2ip:NM_001001602:exon7:c.T1373A:p.L458H,Dab2ip:NM_001290639:exon7:c.T1196A:p.L399H,Dab2ip:NM_001290640:exon7:c.T1337A:p.L446H,Dab2ip:NM_001114124:exon9:c.T1568A:p.L523H,Dab2ip:NM_001114125:exon9:c.T1484A:p.L495H,Dab2ip:NM_001290637:exon9:c.T1397A:p.L466H,Dab2ip:NM_001290641:exon9:c.T1196A:p.L399H"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9952012	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	36869924	12A2p6	cell line	sgMsh2	36869924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	502	0	0	NA	exonic	Olfr352	synonymous SNV	Olfr352:NM_146940:exon1:c.C357A:p.T119T	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	185	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999899	AAC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	198	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.999995	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	40677586	12A2p6	cell line	sgMsh2	40677586	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	163	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon79:c.G12128T:p.W4043L	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9918917	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.241	174	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M5_p20	chr2	40928017	12A2p6	cell line	sgMsh2	40928017	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	36	0	0	NA	exonic	Lrp1b	frameshift deletion	Lrp1b:NM_053011:exon44:c.7200delT:p.I2400Mfs*54	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	220	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9999875	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M5_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	58	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.662039696	2	0.76841	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	94	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.563163638	2	0.9946001	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.213	154	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9974866	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	50	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995124	AAA	synonymous	A	5	AAAAA	NA
M5_p20	chr2	52090195	12A2p6	cell line	sgMsh2	52090195	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	268	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon13:c.T1403A:p.I468N,Rif1:NM_001355415:exon13:c.T1382A:p.I461N,Rif1:NM_175238:exon13:c.T1403A:p.I468N"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	52209455	12A2p6	cell line	sgMsh2	52209455	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	425	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon94:c.A14382G:p.E4794E	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9999798	CTT	synonymous	CCTT	8	CCTTCCTT	NA
M5_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	392	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.13E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	62	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.991749	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	58287755	12A2p6	cell line	sgMsh2	58287755	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	301	0	0	NA	exonic	Acvr1c	nonsynonymous SNV	"Acvr1c:NM_001033369:exon3:c.G311A:p.R104H,Acvr1c:NM_001111030:exon4:c.G701A:p.R234H"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.91E-08	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	177	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999843	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	73	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9954548	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	59815484	12A2p6	cell line	sgMsh2	59815484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	176	0	0	NA	exonic	Tanc1	nonsynonymous SNV	"Tanc1:NM_001290659:exon16:c.A2879G:p.N960S,Tanc1:NM_198294:exon17:c.A2900G:p.N967S"	2qC1.1	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	60653288	12A2p6	cell line	sgMsh2	60653288	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	146	0	0	NA	exonic	Itgb6	nonsynonymous SNV	"Itgb6:NM_021359:exon6:c.C775T:p.R259C,Itgb6:NM_001159564:exon9:c.C775T:p.R259C"	2qC1.2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	CGC	nonsynonymous	GCCA	8	GCCAGCCA	NA
M5_p20	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	323	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9966329	ACT	synonymous	NA	NA	NA	NA
M5_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	112	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M5_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	195	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999888	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.19	147	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8169439	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Vardict	2	0.19	149	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.816802223	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M5_p20	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	188	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9684546	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	67510449	12A2p6	cell line	sgMsh2	67510449	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	170	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.C3033T:p.C1011C,Xirp2:NM_001083919:exon7:c.C3033T:p.C1011C"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9989826	GCA	synonymous	NA	NA	NA	NA
M5_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	239	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr2	67515299	12A2p6	cell line	sgMsh2	67515299	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	124	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7883T:p.Q2628L,Xirp2:NM_001083919:exon7:c.A7883T:p.Q2628L"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	67517005	12A2p6	cell line	sgMsh2	67517005	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	192	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T9589G:p.S3197A,Xirp2:NM_001083919:exon7:c.T9589G:p.S3197A"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999931	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	366	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.9999245	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	69397705	12A2p6	cell line	sgMsh2	69397705	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	125	0	0	NA	exonic	Dhrs9	frameshift deletion	Dhrs9:NM_175512:exon4:c.662delA:p.K223Nfs*27	2qC2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	296	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	2.48E-08	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	69959630	12A2p6	cell line	sgMsh2	69959630	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	315	0	0	NA	exonic	Ubr3	nonsynonymous SNV	"Ubr3:NM_001303033:exon19:c.A2630G:p.D877G,Ubr3:NM_177783:exon19:c.A2630G:p.D877G"	2qC2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.23214379	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	70426841	12A2p6	cell line	sgMsh2	70426841	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	91	0	0	NA	exonic	Myo3b	synonymous SNV	Myo3b:NM_177376:exon35:c.T3882C:p.D1294D	2qC2	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.292329217	3	0.9990649	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr2	73819067	12A2p6	cell line	sgMsh2	73819067	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	252	0	0	NA	exonic	Atf2	nonsynonymous SNV	"Atf2:NM_001284373:exon12:c.G1025A:p.S342N,Atf2:NM_001284374:exon12:c.G614A:p.S205N,Atf2:NM_001284369:exon13:c.G1199A:p.S400N,Atf2:NM_001284372:exon13:c.G1025A:p.S342N,Atf2:NM_009715:exon14:c.G1199A:p.S400N,Atf2:NM_001025093:exon15:c.G1319A:p.S440N,Atf2:NM_001284376:exon15:c.G1178A:p.S393N"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.717926164	2	0.9969144	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	13	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	2	1	1	0.8920463	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	120	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996484	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9840028	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	76716984	12A2p6	cell line	sgMsh2	76716984	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	218	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon182:c.G71736A:p.Q23912Q,Ttn:NM_011652:exon303:c.G91479A:p.Q30493Q,Ttn:NM_001385708:exon340:c.G97311A:p.Q32437Q"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999983	ACT	synonymous	NA	NA	NA	NA
M5_p20	chr2	76871867	12A2p6	cell line	sgMsh2	76871867	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon100:c.A25692C:p.G8564G,Ttn:NM_001385708:exon102:c.A28749C:p.G9583G"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9842431	ATC	synonymous	NA	NA	NA	NA
M5_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	215	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.999998	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	77896385	12A2p6	cell line	sgMsh2	77896385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	165	0	0	NA	exonic	Cwc22	synonymous SNV	"Cwc22:NM_001290740:exon20:c.T2334C:p.D778D,Cwc22:NM_001362657:exon20:c.T2352C:p.D784D,Cwc22:NM_001362658:exon20:c.T2349C:p.D783D,Cwc22:NM_172667:exon20:c.T2331C:p.D777D,Cwc22:NM_001362659:exon21:c.T2331C:p.D777D,Cwc22:NM_030560:exon21:c.T2349C:p.D783D"	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999698	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	308	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	1	1	1.34E-08	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	76	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-3197272-82253895	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.7017859	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	82259246	12A2p6	cell line	sgMsh2	82259246	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	exonic	Zfp804a	stopgain	Zfp804a:NM_175513:exon4:c.G3418T:p.G1140X	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	0.9993237	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	125	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.760915755	2	0.6397909	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	82982296	12A2p6	cell line	sgMsh2	82982296	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	294	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.C8952T:p.L2984L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.928575158	1	0.9999871	TCG	synonymous	NA	NA	NA	NA
M5_p20	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	667	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.700730328	2	1.77E-09	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M5_p20	chr2	82990905	12A2p6	cell line	sgMsh2	82990905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	221	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16975G:p.S5659G	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	83801865	12A2p6	cell line	sgMsh2	83801865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	353	0	0	NA	exonic	Itgav	stopgain	Itgav:NM_008402:exon27:c.G2790A:p.W930X	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.700730328	2	0.9999709	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	316	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.627648024	2	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	83923588	12A2p6	cell line	sgMsh2	83923588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	330	0	0	NA	exonic	Zswim2	nonsynonymous SNV	Zswim2:NM_027964:exon5:c.A727G:p.I243V	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.765214714	2	0.9679191	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	84667326	12A2p6	cell line	sgMsh2	84667326	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	176	0	0	NA	exonic	Btbd18	nonsynonymous SNV	Btbd18:NM_001145100:exon5:c.T1307C:p.V436A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.924276199	1	0.9991614	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	213	0	0	NA	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.593256351	2	0.9999961	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	85430333	12A2p6	cell line	sgMsh2	85430333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	477	0	0	NA	exonic	Olfr994	synonymous SNV	Olfr994:NM_146433:exon1:c.A495G:p.S165S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.309525053	3	1	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	294	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.705029287	2	0.9996941	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	85648260	12A2p6	cell line	sgMsh2	85648260	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	234	0	0	NA	exonic	Olfr1002	frameshift deletion	Olfr1002:NM_146573:exon1:c.60delC:p.F21Sfs*8	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.640544901	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M5_p20	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	423	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.705029287	2	0.9999953	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	382	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.937173077	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	85777152	12A2p6	cell line	sgMsh2	85777152	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.18	424	0	0	NA	exonic	Olfr1014	frameshift insertion	Olfr1014:NM_146569:exon1:c.568dupA:p.K192Efs*77	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	NA	NA	GCA	frameshift	A	5	AAAAA	1
M5_p20	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	1	0.9998516	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	85951347	12A2p6	cell line	sgMsh2	85951347	A	G	SNV	Mutect2;MuSe	2	0.147	64	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.A283G:p.I95V	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.631946983	2	0.8841745	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	85951575	12A2p6	cell line	sgMsh2	85951575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	225	0	0	NA	exonic	Olfr1028	nonsynonymous SNV	Olfr1028:NM_001011774:exon1:c.T511C:p.S171P	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.791008468	2	0.5414529	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	85976178	12A2p6	cell line	sgMsh2	85976178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	536	0	0	NA	exonic	Olfr1029	nonsynonymous SNV	Olfr1029:NM_001011852:exon1:c.A934G:p.T312A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	85983993	12A2p6	cell line	sgMsh2	85983993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	201	0	0	NA	exonic	Olfr1030	nonsynonymous SNV	Olfr1030:NM_146588:exon2:c.T152C:p.M51T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	1	0.6824289	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86075417	12A2p6	cell line	sgMsh2	86075417	A	G	SNV	Mutect2;MuSe;Vardict	3	0.083	777	0	0	NA	exonic	Olfr1036	nonsynonymous SNV	Olfr1036:NM_207142:exon1:c.A676G:p.M226V	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.356813603	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86217093	12A2p6	cell line	sgMsh2	86217093	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.T616C:p.S206P	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.962966831	1	0.9996918	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	444	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.894183486	1	0.9999924	AAA	synonymous	NA	NA	NA	NA
M5_p20	chr2	86423160	12A2p6	cell line	sgMsh2	86423160	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	496	0	0	NA	exonic	Olfr1062	nonsynonymous SNV	Olfr1062:NM_147078:exon1:c.A515T:p.N172I	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	2	0.9897774	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86508848	12A2p6	cell line	sgMsh2	86508848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	243	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.C388T:p.L130F	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.928575158	1	0.9999289	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86553750	12A2p6	cell line	sgMsh2	86553750	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	524	0	0	NA	exonic	Olfr1080	nonsynonymous SNV	Olfr1080:NM_146409:exon2:c.G373T:p.A125S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.842595977	1	0.9966731	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	86786394	12A2p6	cell line	sgMsh2	86786394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	328	0	0	NA	exonic	Olfr1093	synonymous SNV	"Olfr1093:NM_001368206:exon2:c.T663C:p.V221V,Olfr1093:NM_146366:exon3:c.T663C:p.V221V"	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.941472036	1	0.9999988	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	86828814	12A2p6	cell line	sgMsh2	86828814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	279	0	0	NA	exonic	Olfr1094	nonsynonymous SNV	Olfr1094:NM_146365:exon1:c.A61T:p.T21S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.23214379	3	1.00E-09	CAC	nonsynonymous	GACA	8	GACAGACA	NA
M5_p20	chr2	87002837	12A2p6	cell line	sgMsh2	87002837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	387	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.T867G:p.F289L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	1.17E-09	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	218	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.954368913	1	0.9999686	AAA	nonsynonymous	A	6	AAAAAA	NA
M5_p20	chr2	87135939	12A2p6	cell line	sgMsh2	87135939	T	A	SNV	Mutect2;Vardict	2	0.018	402	0	0	NA	exonic	Olfr1110	synonymous SNV	Olfr1110:NM_146769:exon2:c.A381T:p.A127A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.077381263	3	1	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	275	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.954368913	1	0.999997	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87388088	12A2p6	cell line	sgMsh2	87388088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	285	0	0	NA	exonic	Olfr1122	nonsynonymous SNV	Olfr1122:NM_147031:exon1:c.A382G:p.T128A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.911379322	1	0.9999263	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87418268	12A2p6	cell line	sgMsh2	87418268	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	191	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.219delT:p.S77Afs*10	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr2	87434741	12A2p6	cell line	sgMsh2	87434741	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	216	0	0	NA	exonic	Olfr1124	nonsynonymous SNV	Olfr1124:NM_147028:exon1:c.C253T:p.P85S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.257937544	3	1.12E-09	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87457903	12A2p6	cell line	sgMsh2	87457903	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	556	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.C737T:p.T246I	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.795307427	2	0.8553555	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87545112	12A2p6	cell line	sgMsh2	87545112	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	574	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.T431A:p.L144H	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.971564749	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	326	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.760915755	2	0.9772727	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr2	87635233	12A2p6	cell line	sgMsh2	87635233	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	127	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C513A:p.S171S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.894183486	1	0.9875986	TGG	synonymous	NA	NA	NA	NA
M5_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.204	304	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.87698765	NA	NA	CAT	frameshift	NA	NA	NA	1
M5_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	223	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.541668842	2	0.9999717	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	419	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.666338655	2	4.66E-08	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	234	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.791008468	2	0.5570344	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	388	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.855492854	1	0.9976736	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87810610	12A2p6	cell line	sgMsh2	87810610	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	289	0	0	NA	exonic	Olfr1145	synonymous SNV	Olfr1145:NM_146320:exon1:c.G789T:p.L263L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.958667872	1	0.9999988	TGG	synonymous	TGG	10	TGGTGGTGGT	NA
M5_p20	chr2	87857290	12A2p6	cell line	sgMsh2	87857290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	252	0	0	NA	exonic	Olfr1151	synonymous SNV	Olfr1151:NM_146638:exon1:c.T114C:p.T38T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999997	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	456	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.846894936	1	0.9967383	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	249	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.808204305	1	0.7164144	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	87990266	12A2p6	cell line	sgMsh2	87990266	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	575	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.A154T:p.S52C	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	1	1.51E-09	CAG	nonsynonymous	CAGT	9	CAGTCAGTC	NA
M5_p20	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	473	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	2	0.526064	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	357	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.752317837	2	0.9942712	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88093684	12A2p6	cell line	sgMsh2	88093684	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	191	0	0	NA	exonic	Olfr1164	nonsynonymous SNV	Olfr1164:NM_146641:exon1:c.G251A:p.C84Y	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.773812632	2	0.710028	GCA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	748	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	1	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	428	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	1.02E-09	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	88525797	12A2p6	cell line	sgMsh2	88525797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	337	0	0	NA	exonic	Olfr1186	synonymous SNV	Olfr1186:NM_146530:exon1:c.T213C:p.S71S	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.812503264	1	0.7655735	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	88559672	12A2p6	cell line	sgMsh2	88559672	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	286	0	0	NA	exonic	Olfr1188	nonsynonymous SNV	Olfr1188:NM_146919:exon1:c.T202G:p.L68V	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.391205275	3	0.9999636	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88677892	12A2p6	cell line	sgMsh2	88677892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	198	0	0	NA	exonic	Olfr1193	synonymous SNV	Olfr1193:NM_001011517:exon1:c.T36C:p.N12N	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.894183486	1	0.9976192	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr2	88678110	12A2p6	cell line	sgMsh2	88678110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	282	0	0	NA	exonic	Olfr1193	nonsynonymous SNV	Olfr1193:NM_001011517:exon1:c.A254G:p.K85R	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.769513673	2	0.9129077	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	280	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.87698765	1	0.9985546	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88728850	12A2p6	cell line	sgMsh2	88728850	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.169	421	0	0	NA	exonic	Olfr1197	frameshift insertion	Olfr1197:NM_001005225:exon1:c.747dupT:p.G250Wfs*13	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.726524082	NA	NA	CCA	frameshift	A	5	AAAAA	1
M5_p20	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	426	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.700730328	2	0.9999975	CTA	synonymous	ACT	8	ACTACTAC	NA
M5_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	391	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.528771965	2	0.9999994	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr2	88756331	12A2p6	cell line	sgMsh2	88756331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	329	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.C343A:p.L115I,Olfr1199:NM_146458:exon2:c.C343A:p.L115I"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.756616796	2	0.9855887	AGG	nonsynonymous	AGGATA	13	AGGATAAGGATAA	NA
M5_p20	chr2	88756434	12A2p6	cell line	sgMsh2	88756434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	306	0	0	NA	exonic	Olfr1199	synonymous SNV	"Olfr1199:NM_001368212:exon2:c.T240C:p.I80I,Olfr1199:NM_146458:exon2:c.T240C:p.I80I"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.735122	2	0.9968844	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr2	88794769	12A2p6	cell line	sgMsh2	88794769	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	594	0	0	NA	exonic	Olfr1201	nonsynonymous SNV	Olfr1201:NM_146895:exon1:c.G386A:p.R129H	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.791008468	2	0.9397325	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88958925	12A2p6	cell line	sgMsh2	88958925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	495	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.T458C:p.L153S	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	333	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	4.17E-09	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr2	89303195	12A2p6	cell line	sgMsh2	89303195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	205	0	0	NA	exonic	Olfr1231	synonymous SNV	Olfr1231:NM_146454:exon1:c.T396C:p.H132H	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999966	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	89325694	12A2p6	cell line	sgMsh2	89325694	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	342	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.C485A:p.T162N	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.288030257	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	208	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.833998059	1	0.9299327	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	361	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.864090772	1	0.9987092	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	341	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.846894936	1	0.9903782	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	89881051	12A2p6	cell line	sgMsh2	89881051	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	472	0	0	NA	exonic	Olfr1257	nonsynonymous SNV	Olfr1257:NM_146982:exon1:c.G224T:p.S75I	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.778111591	2	0.9755419	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	294	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.524473006	2	0.999974	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	371	0	0	NA	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.730823041	2	0.9995746	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	91065599	12A2p6	cell line	sgMsh2	91065599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	114	0	0	NA	exonic	Slc39a13	nonsynonymous SNV	"Slc39a13:NM_001290765:exon4:c.A556G:p.K186E,Slc39a13:NM_026721:exon4:c.A517G:p.K173E"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	1	0.9953776	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91154700	12A2p6	cell line	sgMsh2	91154700	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	234	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon25:c.A3928T:p.M1310L,Madd:NM_145527:exon26:c.A3928T:p.M1310L,Madd:NM_001177719:exon27:c.A3985T:p.M1329L"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.713627205	2	0.9961693	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	343	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	2	1	1	2.83E-09	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91169815	12A2p6	cell line	sgMsh2	91169815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon9:c.A1745G:p.Y582C,Madd:NM_001177719:exon10:c.A1745G:p.Y582C,Madd:NM_145527:exon10:c.A1745G:p.Y582C"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	1	1	0.9978769	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	228	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.855492854	1	0.9843578	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91505634	12A2p6	cell line	sgMsh2	91505634	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	144	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon35:c.C5129T:p.S1710F	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.803905345	1	0.7205371	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	91770923	12A2p6	cell line	sgMsh2	91770923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	385	0	0	NA	exonic	Ambra1	synonymous SNV	"Ambra1:NM_001080754:exon6:c.T564C:p.F188F,Ambra1:NM_172669:exon6:c.T564C:p.F188F"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.932874117	1	0.9999996	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	68	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	2	1	1	0.9940382	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	94377654	12A2p6	cell line	sgMsh2	94377654	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	182	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon5:c.T610G:p.L204V,Ttc17:NM_001355691:exon5:c.T610G:p.L204V,Ttc17:NM_183106:exon5:c.T610G:p.L204V"	2qE1	chr2-82255917-94427291	5	3	2	0.97	4.169990295	NA	1	0.696431369	2	0.9928532	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	424	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9999986	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	106372412	12A2p6	cell line	sgMsh2	106372412	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	121	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon18:c.C1722A:p.G574G	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	246	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999996	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	107296108	12A2p6	cell line	sgMsh2	107296108	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	270	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A1186G:p.S396G	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9998411	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	110794942	12A2p6	cell line	sgMsh2	110794942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	183	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon2:c.A124G:p.R42G,Ano3:NM_001128103:exon5:c.A562G:p.R188G,Ano3:NM_001355245:exon5:c.A562G:p.R188G"	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9999584	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	110794971	12A2p6	cell line	sgMsh2	110794971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	184	0	0	NA	exonic	Ano3	nonsynonymous SNV	"Ano3:NM_001355244:exon2:c.A95G:p.D32G,Ano3:NM_001128103:exon5:c.A533G:p.D178G,Ano3:NM_001355245:exon5:c.A533G:p.D178G"	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999893	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998448	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	111335393	12A2p6	cell line	sgMsh2	111335393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	645	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C684A:p.R228R	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.259	1111	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	565	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	328	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	5.16E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M5_p20	chr2	111379900	12A2p6	cell line	sgMsh2	111379900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	245	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.A899G:p.K300R	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9996865	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	238	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.8296991	1	0.9208778	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	345	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.752317837	2	0.992867	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	234	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9999039	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	111912707	12A2p6	cell line	sgMsh2	111912707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	440	0	0	NA	exonic	Olfr1306	synonymous SNV	Olfr1306:NM_001011803:exon1:c.T222C:p.S74S	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1.01E-09	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	326	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	5.64E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	112008392	12A2p6	cell line	sgMsh2	112008392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	134	0	0	NA	exonic	Olfr1310	nonsynonymous SNV	Olfr1310:NM_146449:exon1:c.T793C:p.S265P	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.743719919	2	0.8014911	GAT	nonsynonymous	GATGT	10	GATGTGATGT	NA
M5_p20	chr2	112241488	12A2p6	cell line	sgMsh2	112241488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	110	0	0	NA	exonic	Lpcat4	nonsynonymous SNV	Lpcat4:NM_207206:exon2:c.T152C:p.V51A	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.481483415	2	0.9194565	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	142	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998941	AAC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	170	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.848747	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	139	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998753	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	118461764	12A2p6	cell line	sgMsh2	118461764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	94	0	0	NA	exonic	Eif2ak4	nonsynonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3224G:p.D1075G,Eif2ak4:NM_001177806:exon27:c.A3458G:p.D1153G,Eif2ak4:NM_013719:exon28:c.A3794G:p.D1265G"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.545967801	2	0.9938944	GAT	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	112	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.947473	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	34	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9302029	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	118917218	12A2p6	cell line	sgMsh2	118917218	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	138	0	0	NA	exonic	Bahd1	synonymous SNV	Bahd1:NM_001045523:exon2:c.T1317C:p.N439N	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9942842	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	110	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M5_p20	chr2	119156519	12A2p6	cell line	sgMsh2	119156519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	27	0	0	NA	exonic	Rmdn3	nonsynonymous SNV	Rmdn3:NM_001033136:exon2:c.G26A:p.G9D	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.8915626	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	49	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9833744	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	119332788	12A2p6	cell line	sgMsh2	119332788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	124	0	0	NA	exonic	Dll4	nonsynonymous SNV	Dll4:NM_019454:exon9:c.G1889A:p.G630E	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.696431369	2	0.948489	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	53	0	0	NA	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9865897	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	48	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9824588	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	119774213	12A2p6	cell line	sgMsh2	119774213	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.181	160	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon10:c.G1213T:p.G405W,Rpap1:NM_177294:exon11:c.G1213T:p.G405W"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.778111591	2	0.5791343	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	94	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M5_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	117	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	240	0	0	NA	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.6548242	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	120697786	12A2p6	cell line	sgMsh2	120697786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	159	0	0	NA	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon23:c.A4595G:p.E1532G	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999581	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	120705724	12A2p6	cell line	sgMsh2	120705724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	145	0	0	NA	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon24:c.T12445C:p.F4149L	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999101	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	119	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	146	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	104	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9915165	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	121303394	12A2p6	cell line	sgMsh2	121303394	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.177	80	0	0	NA	exonic	Map1a	frameshift insertion	"Map1a:NM_001173506:exon4:c.3977dupG:p.K1329fs*0,Map1a:NM_032393:exon5:c.4691dupG:p.K1567fs*0"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.760915755	NA	NA	GTG	frameshift	G	5	GGGGG	1
M5_p20	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	183	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999887	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.414	40	0	0	NA	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9731205	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr2	121510756	12A2p6	cell line	sgMsh2	121510756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	141	0	0	NA	exonic	Wdr76	nonsynonymous SNV	Wdr76:NM_001369185:exon2:c.T281C:p.V94A	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.812503264	1	0.788129	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	122798101	12A2p6	cell line	sgMsh2	122798101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	123	0	0	NA	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon5:c.G523A:p.V175M,Sqor:NM_021507:exon5:c.G523A:p.V175M"	2qE5	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	125308525	12A2p6	cell line	sgMsh2	125308525	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	112	0	0	NA	exonic	Fbn1	stopgain	Fbn1:NM_007993:exon63:c.T7770G:p.Y2590X	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994562	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	126	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997465	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	114	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9995124	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	126755082	12A2p6	cell line	sgMsh2	126755082	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	217	0	0	NA	exonic	Usp8	synonymous SNV	"Usp8:NM_001252580:exon16:c.A2811C:p.L937L,Usp8:NM_019729:exon16:c.A2778C:p.L926L"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999982	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	140	0	0	NA	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998819	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	301	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9995404	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	137	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9930233	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	287	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.9708629	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	235	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	180	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999867	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.315	256	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.9107	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	131	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	151	0	0	NA	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999352	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9879589	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	52	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9437966	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	131520730	12A2p6	cell line	sgMsh2	131520730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	99	0	0	NA	exonic	Smox	nonsynonymous SNV	"Smox:NM_001177833:exon5:c.C928T:p.P310S,Smox:NM_001177834:exon5:c.C928T:p.P310S,Smox:NM_001177835:exon5:c.C928T:p.P310S,Smox:NM_145533:exon5:c.C928T:p.P310S"	2qF1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	115	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.808204305	1	0.7659143	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	161	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999215	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	132304956	12A2p6	cell line	sgMsh2	132304956	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	247	0	0	NA	exonic	Cds2	nonsynonymous SNV	"Cds2:NM_001291039:exon12:c.G1151T:p.R384M,Cds2:NM_138651:exon12:c.G1202T:p.R401M"	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999989	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	132373550	12A2p6	cell line	sgMsh2	132373550	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	281	0	0	NA	exonic	Prokr2	synonymous SNV	Prokr2:NM_144944:exon3:c.C990T:p.F330F	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9971135	CGA	synonymous	NA	NA	NA	NA
M5_p20	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.208	113	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9828769	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	142707297	12A2p6	cell line	sgMsh2	142707297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	125	0	0	NA	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon20:c.T3297C:p.S1099S,Kif16b:NM_001355123:exon21:c.T3330C:p.S1110S"	2qG1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997323	CAC	synonymous	C	5	CCCCC	NA
M5_p20	chr2	142712909	12A2p6	cell line	sgMsh2	142712909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	97	0	0	NA	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon19:c.A1968G:p.E656E,Kif16b:NM_001355123:exon20:c.A2001G:p.E667E"	2qG1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	TTT	synonymous	NA	NA	NA	NA
M5_p20	chr2	148771377	12A2p6	cell line	sgMsh2	148771377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	74	0	0	NA	exonic	Cst11	synonymous SNV	Cst11:NM_030059:exon1:c.A27G:p.T9T	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.743719919	2	0.5350839	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	150753190	12A2p6	cell line	sgMsh2	150753190	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	76	0	0	NA	exonic	Entpd6	nonsynonymous SNV	"Entpd6:NM_001355068:exon2:c.C149T:p.A50V,Entpd6:NM_001370629:exon2:c.C149T:p.A50V,Entpd6:NM_001370630:exon2:c.C149T:p.A50V,Entpd6:NM_001370631:exon2:c.C149T:p.A50V,Entpd6:NM_172117:exon2:c.C149T:p.A50V"	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.567462597	2	0.9809367	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	150930854	12A2p6	cell line	sgMsh2	150930854	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	192	0	0	NA	exonic	Gins1	nonsynonymous SNV	Gins1:NM_027014:exon7:c.G536A:p.R179Q	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999931	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	150937588	12A2p6	cell line	sgMsh2	150937588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	57	0	0	NA	exonic	Ninl	nonsynonymous SNV	Ninl:NM_207204:exon22:c.A3845G:p.K1282R	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.858441	CTT	nonsynonymous	CTTCCT	12	CTTCCTCTTCCT	NA
M5_p20	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	79	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9930008	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	29	0	0	NA	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.889468	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	169	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9998466	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr2	153203878	12A2p6	cell line	sgMsh2	153203878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	70	0	0	NA	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon16:c.G1669T:p.V557L	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.7493259	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	170	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.735122	2	0.9295023	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	141	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8416628	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M5_p20	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	139	0	0	NA	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998753	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	33	0	0	NA	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.778111591	1	0.7408647	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr2	155716199	12A2p6	cell line	sgMsh2	155716199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	79	0	0	NA	exonic	Edem2	nonsynonymous SNV	Edem2:NM_145537:exon6:c.G513A:p.M171I	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	155753594	12A2p6	cell line	sgMsh2	155753594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	61	0	0	NA	exonic	Procr	nonsynonymous SNV	Procr:NM_011171:exon2:c.A317G:p.N106S	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9912904	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	155990259	12A2p6	cell line	sgMsh2	155990259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	110	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon28:c.C4100T:p.A1367V,Cep250:NM_001130000:exon28:c.C4103T:p.A1368V,Cep250:NM_008383:exon29:c.C4040T:p.A1347V,Cep250:NM_177217:exon29:c.C4040T:p.A1347V"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9759061	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	53	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9865897	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	156045671	12A2p6	cell line	sgMsh2	156045671	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	38	0	0	NA	exonic	Fer1l4	frameshift deletion	Fer1l4:NM_001136556:exon15:c.1604delG:p.G535Afs*9	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5_p20	chr2	156077617	12A2p6	cell line	sgMsh2	156077617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	exonic	Cpne1	nonsynonymous SNV	"Cpne1:NM_170590:exon11:c.G931A:p.G311R,Cpne1:NM_170588:exon12:c.G931A:p.G311R"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.272	211	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	20	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9239751	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	488	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr2	157120489	12A2p6	cell line	sgMsh2	157120489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.314	108	0	0	NA	exonic	Samhd1	frameshift deletion	"Samhd1:NM_001139520:exon6:c.692delA:p.K231Sfs*24,Samhd1:NM_001370610:exon6:c.692delA:p.K231Sfs*24,Samhd1:NM_018851:exon6:c.692delA:p.K231Sfs*24"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr2	157469871	12A2p6	cell line	sgMsh2	157469871	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	49	0	0	NA	exonic	Src	nonsynonymous SNV	"Src:NM_001025395:exon14:c.G1518T:p.E506D,Src:NM_009271:exon15:c.G1536T:p.E512D"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9833744	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	136	0	0	NA	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M5_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	81	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9970573	GCG	synonymous	NA	NA	NA	NA
M5_p20	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	153	0	0	NA	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999419	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	33	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	2	1	1	0.9611086	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	297	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.999983	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	311	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1.15E-08	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M5_p20	chr2	164562769	12A2p6	cell line	sgMsh2	164562769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	exonic	Wfdc2	nonsynonymous SNV	"Wfdc2:NM_001374655:exon1:c.T44C:p.L15P,Wfdc2:NM_026323:exon1:c.T44C:p.L15P"	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9912904	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	165434190	12A2p6	cell line	sgMsh2	165434190	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	88	0	0	NA	exonic	Slc13a3	nonsynonymous SNV	Slc13a3:NM_054055:exon5:c.C635T:p.P212L	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	85	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8420652	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	166927269	12A2p6	cell line	sgMsh2	166927269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	215	0	0	NA	exonic	Cse1l	nonsynonymous SNV	Cse1l:NM_023565:exon8:c.A701G:p.N234S	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.99878	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	167056773	12A2p6	cell line	sgMsh2	167056773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	209	0	0	NA	exonic	Znfx1	nonsynonymous SNV	Znfx1:NM_001033196:exon3:c.A230G:p.N77S	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999973	GTT	nonsynonymous	TTC	9	TTCTTCTTC	NA
M5_p20	chr2	167617965	12A2p6	cell line	sgMsh2	167617965	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	150	0	0	NA	exonic	Ube2v1	nonsynonymous SNV	"Ube2v1:NM_001311146:exon2:c.C35T:p.P12L,Ube2v1:NM_023230:exon2:c.C35T:p.P12L,Ube2v1:NM_001311131:exon3:c.C113T:p.P38L"	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999231	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	167974773	12A2p6	cell line	sgMsh2	167974773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	101	0	0	NA	exonic	Ptpn1	synonymous SNV	Ptpn1:NM_011201:exon7:c.A747G:p.V249V	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.791008468	1	0.6684102	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	167980825	12A2p6	cell line	sgMsh2	167980825	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	111	0	0	NA	exonic	Ripor3	stoploss	Ripor3:NM_001080708:exon22:c.2815delT:p.*939delinsKMP*	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M5_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	284	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	4.68E-08	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9683346	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	168926553	12A2p6	cell line	sgMsh2	168926553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	98	0	0	NA	exonic	Zfp64	stopgain	Zfp64:NM_009564:exon6:c.C1138T:p.Q380X	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	128	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997727	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	148	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9988212	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	143	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998997	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	95	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9538151	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	174345484	12A2p6	cell line	sgMsh2	174345484	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	125	0	0	NA	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon8:c.A2936C:p.N979T,Gnas:NM_001077510:exon8:c.A719C:p.N240T,Gnas:NM_001364030:exon8:c.A716C:p.N239T,Gnas:NM_010309:exon9:c.A2978C:p.N993T,Gnas:NM_201616:exon9:c.A761C:p.N254T,Gnas:NM_001310083:exon10:c.A761C:p.N254T"	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.769513673	2	0.5641434	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	58	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9897579	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	355	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	1.95E-09	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr2	178347653	12A2p6	cell line	sgMsh2	178347653	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	91	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon42:c.T4291G:p.F1431V	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9982924	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	136	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	0.6521232	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9808474	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	108	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993237	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr2	180911023	12A2p6	cell line	sgMsh2	180911023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	128	0	0	NA	exonic	Ythdf1	synonymous SNV	Ythdf1:NM_173761:exon4:c.T1317C:p.S439S	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997727	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	86	0	0	NA	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.687833451	2	0.8589693	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	108	0	0	NA	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.998544	ATC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	268	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-94427292-181807525	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.999999	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	82	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M5_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	231	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	7539087	12A2p6	cell line	sgMsh2	7539087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	230	0	0	NA	exonic	Zc2hc1a	nonsynonymous SNV	Zc2hc1a:NM_173181:exon8:c.A713G:p.K238R	3qA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	337	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	3.55E-09	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	233	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.902781404	1	0.9994168	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	134	0	0	NA	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.722225123	2	0.09588935	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	77	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9963425	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	18072694	12A2p6	cell line	sgMsh2	18072694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	330	0	0	NA	exonic	Cyp7b1	synonymous SNV	Cyp7b1:NM_007825:exon6:c.A1287G:p.G429G	3qA1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.305226094	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr3	20015776	12A2p6	cell line	sgMsh2	20015776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	116	0	0	NA	exonic	Hps3	nonsynonymous SNV	Hps3:NM_001146324:exon9:c.A1735G:p.R579G	3qA2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9995627	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	215	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999388	ACA	synonymous	NA	NA	NA	NA
M5_p20	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	47	0	0	NA	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9814936	AAT	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr3	20239672	12A2p6	cell line	sgMsh2	20239672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	316	0	0	NA	exonic	Cpa3	nonsynonymous SNV	Cpa3:NM_007753:exon3:c.T151C:p.F51L	3qA2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	9.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	368	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	1.47E-09	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	28895683	12A2p6	cell line	sgMsh2	28895683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.402	96	0	0	NA	exonic	Gm1527	frameshift deletion	Gm1527:NM_001033479:exon2:c.91delA:p.R34Dfs*15	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M5_p20	chr3	30598185	12A2p6	cell line	sgMsh2	30598185	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	168	0	0	NA	exonic	Actrt3	nonsynonymous SNV	Actrt3:NM_029690:exon2:c.G759T:p.E253D	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999743	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	232	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999992	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	85	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.962966831	1	0.9940404	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	36164762	12A2p6	cell line	sgMsh2	36164762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	236	0	0	NA	exonic	Zfp267	synonymous SNV	Zfp267:NM_001101478:exon4:c.C933T:p.D311D	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.915678281	1	0.9997797	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	187	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.924276199	1	0.9994117	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr3	36988258	12A2p6	cell line	sgMsh2	36988258	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	216	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon48:c.A8389T:p.M2797L	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.687833451	2	0.9987274	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	397	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	1.10E-09	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	38891206	12A2p6	cell line	sgMsh2	38891206	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.2	127	0	0	NA	exonic	Fat4	frameshift insertion	Fat4:NM_183221:exon1:c.4248dupC:p.S1419Qfs*8	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.859791813	NA	NA	AAC	frameshift	C	5	CCCCC	1
M5_p20	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	234	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999993	TGC	synonymous	NA	NA	NA	NA
M5_p20	chr3	41613752	12A2p6	cell line	sgMsh2	41613752	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	54	0	0	NA	exonic	Jade1	stopgain	"Jade1:NM_001130184:exon11:c.C2254T:p.Q752X,Jade1:NM_001130185:exon11:c.C2254T:p.Q752X,Jade1:NM_001130186:exon11:c.C2254T:p.Q752X,Jade1:NM_172303:exon11:c.C2254T:p.Q752X"	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9872925	GCA	nonsynonymous	GCA	9	GCAGCAGCA	NA
M5_p20	chr3	41742008	12A2p6	cell line	sgMsh2	41742008	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	402	0	0	NA	exonic	Sclt1	synonymous SNV	Sclt1:NM_001081411:exon1:c.A21G:p.L7L	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.825400141	1	0.9350459	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr3	45392577	12A2p6	cell line	sgMsh2	45392577	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	271	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.C2806A:p.L936I,Pcdh10:NM_001098171:exon4:c.C2806A:p.L936I,Pcdh10:NM_001098172:exon4:c.C2806A:p.L936I"	3qB	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999999	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	49755048	12A2p6	cell line	sgMsh2	49755048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	387	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.T1817A:p.V606D	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.954368913	1	3.12E-08	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	121	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9996671	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	275	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.812503264	1	0.7728842	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	166	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.993815	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	54734326	12A2p6	cell line	sgMsh2	54734326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	282	0	0	NA	exonic	Exosc8	synonymous SNV	"Exosc8:NM_001163570:exon2:c.G24A:p.V8V,Exosc8:NM_027148:exon2:c.G24A:p.V8V"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.855492854	1	0.9917537	CCA	synonymous	NA	NA	NA	NA
M5_p20	chr3	54782403	12A2p6	cell line	sgMsh2	54782403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	21	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon2:c.A43G:p.S15G	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9277295	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	253	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.9990925	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	153	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999419	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	55209024	12A2p6	cell line	sgMsh2	55209024	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	120	0	0	NA	exonic	Sohlh2	nonsynonymous SNV	Sohlh2:NM_028937:exon11:c.T1392A:p.S464R	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.743719919	2	0.7507826	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	102	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.941472036	1	0.9945846	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M5_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	319	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.958667872	1	0.9999997	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	373	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	3	1	1	1.36E-09	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.363	112	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr3	59179396	12A2p6	cell line	sgMsh2	59179396	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	194	0	0	NA	exonic	Gpr87	synonymous SNV	Gpr87:NM_001302203:exon3:c.C687A:p.I229I	3qD	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999938	AGA	synonymous	NA	NA	NA	NA
M5_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	251	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	59328421	12A2p6	cell line	sgMsh2	59328421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	112	0	0	NA	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.T4338C:p.S1446S	3qD	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.868389731	1	0.9599218	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.182	33	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.78241055	1	0.7488142	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	397	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.91997724	1	0.9999989	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	144	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.541668842	2	0.9993184	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Strelka2;Vardict	2	0.2212	104	0	0	NA	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.950929746	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M5_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	332	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999993	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	75616724	12A2p6	cell line	sgMsh2	75616724	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	146	0	0	NA	exonic	Serpini1	nonsynonymous SNV	"Serpini1:NM_001357514:exon4:c.A635T:p.Q212L,Serpini1:NM_009250:exon4:c.A638T:p.Q213L"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999148	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	76588983	12A2p6	cell line	sgMsh2	76588983	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	183	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon9:c.C1052T:p.A351V,Fstl5:NM_178673:exon9:c.C1052T:p.A351V"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.833998059	1	0.920124	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	76707951	12A2p6	cell line	sgMsh2	76707951	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	142	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon16:c.C2318T:p.S773F,Fstl5:NM_178673:exon16:c.C2318T:p.S773F"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9998941	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	72	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.786709509	1	0.6926789	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	265	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	143	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.8296991	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr3	82541404	12A2p6	cell line	sgMsh2	82541404	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	156	0	0	NA	exonic	Npy2r	stopgain	"Npy2r:NM_001205099:exon2:c.T63G:p.Y21X,Npy2r:NM_008731:exon2:c.T63G:p.Y21X"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.318122971	3	0.9999827	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	177	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999843	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	83030849	12A2p6	cell line	sgMsh2	83030849	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	49	0	0	NA	exonic	Fga	nonsynonymous SNV	"Fga:NM_001111048:exon5:c.A530T:p.K177M,Fga:NM_010196:exon5:c.A530T:p.K177M"	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.859791813	1	0.8866614	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	83837498	12A2p6	cell line	sgMsh2	83837498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	210	0	0	NA	exonic	Tlr2	nonsynonymous SNV	Tlr2:NM_011905:exon3:c.A1277G:p.H426R	3qE3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999974	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	172	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999794	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	426	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.988760585	1	1.08E-09	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M5_p20	chr3	86085274	12A2p6	cell line	sgMsh2	86085274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	67	0	0	NA	exonic	Sh3d19	nonsynonymous SNV	"Sh3d19:NM_001082414:exon8:c.T1259C:p.I420T,Sh3d19:NM_001374679:exon9:c.T1259C:p.I420T"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.975863708	1	0.9899062	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	284	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.756616796	2	0.9693744	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	86998896	12A2p6	cell line	sgMsh2	86998896	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	246	0	0	NA	exonic	Cd1d1	nonsynonymous SNV	"Cd1d1:NM_001379501:exon2:c.A71C:p.K24T,Cd1d1:NM_001379502:exon2:c.A71C:p.K24T,Cd1d1:NM_007639:exon2:c.A71C:p.K24T"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.558864679	2	0.9999988	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	87925088	12A2p6	cell line	sgMsh2	87925088	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	95	0	0	NA	exonic	Rrnad1	nonsynonymous SNV	Rrnad1:NM_153562:exon6:c.A980C:p.E327A	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9986266	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	88083991	12A2p6	cell line	sgMsh2	88083991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	147	0	0	NA	exonic	Iqgap3	nonsynonymous SNV	Iqgap3:NM_001033484:exon2:c.A98G:p.Y33C	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999194	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	114	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9995124	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	88895604	12A2p6	cell line	sgMsh2	88895604	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	743	0	0	NA	exonic	Gon4l	nonsynonymous SNV	"Gon4l:NM_027389:exon21:c.C3521A:p.T1174N,Gon4l:NM_001242372:exon22:c.C3572A:p.T1191N"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.924276199	1	1.01E-09	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	89094889	12A2p6	cell line	sgMsh2	89094889	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	268	0	0	NA	exonic	Fdps	nonsynonymous SNV	"Fdps:NM_134469:exon7:c.T619A:p.Y207N,Fdps:NM_001253751:exon8:c.T820A:p.Y274N"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.812503264	1	0.7736994	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	77	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9963425	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M5_p20	chr3	89231054	12A2p6	cell line	sgMsh2	89231054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	241	0	0	NA	exonic	Muc1	nonsynonymous SNV	Muc1:NM_013605:exon2:c.T1202C:p.V401A	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999995	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	101	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9990096	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	89447351	12A2p6	cell line	sgMsh2	89447351	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	49	0	0	NA	exonic	Pbxip1	nonsynonymous SNV	Pbxip1:NM_146131:exon10:c.G1176T:p.K392N	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9833744	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	118	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9996079	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	56	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.713627205	2	6.60E-05	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	218	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.928575158	1	0.9998356	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	313	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.971564749	1	0.9999999	TCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	343	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	2.83E-09	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	568	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.872688691	1	0.9999848	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	64	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9925954	CTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	83	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.907080363	1	0.9750021	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	251	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	339	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.700730328	2	0.9999535	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	342	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.752317837	2	0.9924656	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	95764124	12A2p6	cell line	sgMsh2	95764124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	84	0	0	NA	exonic	Rprd2	synonymous SNV	"Rprd2:NM_001368179:exon10:c.A3834G:p.V1278V,Rprd2:NM_001081293:exon11:c.A3966G:p.V1322V,Rprd2:NM_001368178:exon11:c.A3912G:p.V1304V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.662039696	2	0.914489	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	166	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999714	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	184	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.9958381	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Strelka2;Vardict	2	0.3529	17	0	0	NA	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	242	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999995	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr3	97603689	12A2p6	cell line	sgMsh2	97603689	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	215	0	0	NA	exonic	Chd1l	synonymous SNV	Chd1l:NM_026539:exon3:c.T300G:p.V100V	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.9978992	AAA	synonymous	NA	NA	NA	NA
M5_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	171	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.894183486	1	0.9955327	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	245	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.937173077	1	0.9999642	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr3	98297028	12A2p6	cell line	sgMsh2	98297028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	194	0	0	NA	exonic	Hmgcs2	synonymous SNV	Hmgcs2:NM_008256:exon4:c.A744G:p.S248S	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.851193895	1	0.9703629	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	138	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.937173077	1	0.9983104	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr3	100095607	12A2p6	cell line	sgMsh2	100095607	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	263	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon39:c.C5646A:p.S1882R	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.87698765	1	0.9980274	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	100888311	12A2p6	cell line	sgMsh2	100888311	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	137	0	0	NA	exonic	Vtcn1	nonsynonymous SNV	Vtcn1:NM_178594:exon4:c.G593T:p.S198I	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.924276199	1	0.9970567	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	177	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.791008468	1	0.5422728	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	170	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.999977	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103326175	12A2p6	cell line	sgMsh2	103326175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	69	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon7:c.T1285C:p.F429L,Trim33:NM_053170:exon7:c.T1285C:p.F429L"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.950069954	1	0.9845793	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	409	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	1.05E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103575472	12A2p6	cell line	sgMsh2	103575472	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	25	0	0	NA	exonic	Syt6	nonsynonymous SNV	Syt6:NM_018800:exon1:c.T95G:p.L32R	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9410786	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103777760	12A2p6	cell line	sgMsh2	103777760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	143	0	0	NA	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon2:c.C538A:p.H180N,Hipk1:NM_001301306:exon2:c.C538A:p.H180N,Hipk1:NM_010432:exon2:c.C538A:p.H180N"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9998997	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	62	0	0	NA	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.91997724	1	0.9653845	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	104650899	12A2p6	cell line	sgMsh2	104650899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	251	0	0	NA	exonic	Slc16a1	synonymous SNV	Slc16a1:NM_009196:exon3:c.T231C:p.S77S	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999997	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.619050106	2	0.999618	GGA	synonymous	NA	NA	NA	NA
M5_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	123	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9997015	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	337	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.915678281	1	0.999989	CTG	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	166	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999714	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	257	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.588957392	2	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	106762161	12A2p6	cell line	sgMsh2	106762161	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	139	0	0	NA	exonic	Cd53	nonsynonymous SNV	Cd53:NM_007651:exon7:c.G520A:p.A174T	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.971564749	1	0.9996006	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	107195326	12A2p6	cell line	sgMsh2	107195326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	123	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1272T:p.Y424Y	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9997015	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	133	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.748018878	2	0.7696551	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.2086	187	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.896762861	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M5_p20	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	54	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.980162667	1	0.9826617	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108267820	12A2p6	cell line	sgMsh2	108267820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	465	0	0	NA	exonic	Psma5	nonsynonymous SNV	Psma5:NM_011967:exon5:c.A319G:p.M107V	3qF2.3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.748018878	2	0.9995611	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	234	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999993	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.146	53	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.627648024	2	0.818108	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108412474	12A2p6	cell line	sgMsh2	108412474	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	151	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.T3021A:p.A1007A,Celsr2:NM_017392:exon1:c.T3021A:p.A1007A"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.9914022	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	122	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9996847	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr3	108414903	12A2p6	cell line	sgMsh2	108414903	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	212	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon1:c.A592G:p.T198A,Celsr2:NM_017392:exon1:c.A592G:p.T198A"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999977	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	172	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.842595977	1	0.9435966	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	103	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.962966831	1	0.9972743	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	113249333	12A2p6	cell line	sgMsh2	113249333	T	A	SNV	Mutect2;MuSe	2	0.25	22	0	0	NA	exonic	Amy2a5	stopgain	Amy2a5:NM_001042711:exon10:c.A1405T:p.K469X	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9313098	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	114206392	12A2p6	cell line	sgMsh2	114206392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	175	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon60:c.A4483G:p.I1495V	3qF3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.889884527	1	0.9949259	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	160	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999603	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr3	116497647	12A2p6	cell line	sgMsh2	116497647	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	165	0	0	NA	exonic	Rtca	nonsynonymous SNV	Rtca:NM_025517:exon7:c.G683T:p.S228I	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999698	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	71	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.885585568	1	0.9472531	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	204	0	0	NA	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999964	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116581500	12A2p6	cell line	sgMsh2	116581500	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	250	0	0	NA	exonic	Trmt13	nonsynonymous SNV	Trmt13:NM_030016:exon12:c.A1358G:p.Y453C	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	185	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.709328246	2	0.9870791	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	182	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.872688691	1	0.9891408	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	235	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.915678281	1	0.9997731	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	123479673	12A2p6	cell line	sgMsh2	123479673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	263	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon4:c.A917G:p.N306S	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	166	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999714	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	125713338	12A2p6	cell line	sgMsh2	125713338	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	159	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon11:c.G2150T:p.R717M	3qG1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999581	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	236	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999994	CGA	synonymous	NA	NA	NA	NA
M5_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	277	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.773812632	2	0.8735163	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr3	129633453	12A2p6	cell line	sgMsh2	129633453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	129	0	0	NA	exonic	Elovl6	nonsynonymous SNV	Elovl6:NM_130450:exon5:c.A767G:p.Y256C	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9997848	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	248	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	96	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9986994	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	363	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	1.62E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	184	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999893	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	216	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.791008468	2	0.52579	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	157	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999533	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr3	133467338	12A2p6	cell line	sgMsh2	133467338	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	326	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon11:c.G5138C:p.G1713A,Tet2:NM_001346736:exon12:c.G5162C:p.G1721A"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.361112562	3	3.61E-08	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	222	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.915678281	1	0.9996661	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	147	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.705029287	2	0.9658513	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	269	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.833998059	1	0.9493682	AAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr3	142623776	12A2p6	cell line	sgMsh2	142623776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	237	0	0	NA	exonic	Gbp2	nonsynonymous SNV	Gbp2:NM_010260:exon2:c.T83C:p.L28P	3qH1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.623349065	2	0.9999935	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	180	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999867	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	377	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	1.29E-09	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	403	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.894183486	1	0.9999802	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	160	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.821101182	1	0.8463341	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	133	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.999827	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	152374766	12A2p6	cell line	sgMsh2	152374766	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	258	0	0	NA	exonic	Usp33	synonymous SNV	"Usp33:NM_001076676:exon13:c.T1533G:p.A511A,Usp33:NM_001252486:exon13:c.T1533G:p.A511A,Usp33:NM_001355666:exon13:c.T1533G:p.A511A,Usp33:NM_133247:exon13:c.T1533G:p.A511A"	3qH3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999998	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr3	152428148	12A2p6	cell line	sgMsh2	152428148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	244	0	0	NA	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001355673:exon3:c.A842G:p.Q281R,Zzz3:NM_001080755:exon4:c.A842G:p.Q281R,Zzz3:NM_001287139:exon4:c.A842G:p.Q281R"	3qH3	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	75	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9959226	CCA	synonymous	C	5	CCCCC	NA
M5_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	564	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.842595977	1	0.9976009	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	161	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999624	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	152	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.683534492	2	0.9886361	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	259	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	125	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.954368913	1	0.9985661	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	165	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	1	0.765214714	2	0.7310133	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	248	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr3	158175119	12A2p6	cell line	sgMsh2	158175119	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	163	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon17:c.C1778T:p.S593F,Lrrc7:NM_001370782:exon17:c.C1778T:p.S593F,Lrrc7:NM_001081358:exon18:c.C1679T:p.S560F,Lrrc7:NM_001291452:exon18:c.C1679T:p.S560F,Lrrc7:NM_001291453:exon18:c.C1679T:p.S560F"	3qH4	chr3-10012637-159913826	5	3	2	0.97	4.169990295	NA	2	1	1	0.9999663	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	4134286	12A2p6	cell line	sgMsh2	4134286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	162	0	0	NA	exonic	Penk	nonsynonymous SNV	"Penk:NM_001002927:exon2:c.G360T:p.M120I,Penk:NM_001348209:exon3:c.G360T:p.M120I"	4qA1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999644	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	79	0	0	NA	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9967192	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	11245804	12A2p6	cell line	sgMsh2	11245804	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	130	0	0	NA	exonic	Ints8	nonsynonymous SNV	"Ints8:NM_001159595:exon6:c.G673A:p.V225M,Ints8:NM_178112:exon6:c.G673A:p.V225M"	4qA1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997962	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	211	0	0	NA	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	15919841	12A2p6	cell line	sgMsh2	15919841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	0	0	NA	exonic	Decr1	synonymous SNV	Decr1:NM_026172:exon8:c.T876C:p.I292I	4qA2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9980959	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	234	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999993	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr4	18116212	12A2p6	cell line	sgMsh2	18116212	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	101	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon10:c.G1815T:p.E605D,Mmp16:NM_001379518:exon11:c.G1815T:p.E605D,Mmp16:NM_001379519:exon11:c.G1815T:p.E605D"	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9990096	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.637	133	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.999827	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	19481922	12A2p6	cell line	sgMsh2	19481922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	133	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon15:c.A1730G:p.K577R	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.999827	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	73	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9954548	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	168	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999743	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	209	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999973	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	24505411	12A2p6	cell line	sgMsh2	24505411	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	226	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon6:c.C670A:p.L224M	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999989	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	25620102	12A2p6	cell line	sgMsh2	25620102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	123	0	0	NA	exonic	Fut9	synonymous SNV	Fut9:NM_010243:exon3:c.T711C:p.T237T	4qA3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.911379322	1	0.9926576	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	223	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999987	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	203	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999962	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	142	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998941	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	41118884	12A2p6	cell line	sgMsh2	41118884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	57	0	0	NA	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon16:c.A2108G:p.E703G	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9891899	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	41121873	12A2p6	cell line	sgMsh2	41121873	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	49	0	0	NA	exonic	Nol6	synonymous SNV	Nol6:NM_139236:exon5:c.T660G:p.A220A	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9833744	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.372	81	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr4	41638833	12A2p6	cell line	sgMsh2	41638833	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	61	0	0	NA	exonic	Enho	nonsynonymous SNV	Enho:NM_027147:exon2:c.G10A:p.A4T	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9912904	GCT	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr4	41765455	12A2p6	cell line	sgMsh2	41765455	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	160	0	0	NA	exonic	Il11ra1	synonymous SNV	"Il11ra1:NM_001163401:exon7:c.T549C:p.H183H,Il11ra1:NM_010549:exon7:c.T549C:p.H183H,Il11ra1:NM_001172054:exon8:c.T549C:p.H183H"	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999603	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr4	43654928	12A2p6	cell line	sgMsh2	43654928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	55	0	0	NA	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon2:c.A200G:p.D67G	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.954368913	1	0.9751158	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	178	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999851	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	45285604	12A2p6	cell line	sgMsh2	45285604	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	42	0	0	NA	exonic	Frmpd1	nonsynonymous SNV	Frmpd1:NM_001081172:exon16:c.G4424A:p.C1475Y	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9758313	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.366	297	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr4	48204258	12A2p6	cell line	sgMsh2	48204258	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	95	0	0	NA	exonic	Erp44	nonsynonymous SNV	"Erp44:NM_001355184:exon9:c.G626T:p.C209F,Erp44:NM_029572:exon10:c.G902T:p.C301F"	4qB1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9986266	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	87	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9978769	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	170	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.999977	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	65	0	0	NA	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9929857	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	327	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	5.39E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	80	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9968929	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	139	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998753	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	59113907	12A2p6	cell line	sgMsh2	59113907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	66	0	0	NA	exonic	Shoc1	synonymous SNV	Shoc1:NM_001370843:exon2:c.T57C:p.Y19Y	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.96726579	1	0.9875211	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	74	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.995695	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr4	63151497	12A2p6	cell line	sgMsh2	63151497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	189	0	0	NA	exonic	Ambp	stopgain	Ambp:NM_007443:exon3:c.C291A:p.Y97X	4qB3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999918	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	33	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9611086	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	65992427	12A2p6	cell line	sgMsh2	65992427	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	93	0	0	NA	exonic	Astn2	synonymous SNV	"Astn2:NM_019514:exon5:c.G1167T:p.L389L,Astn2:NM_207109:exon6:c.G1323T:p.L441L"	4qC1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9984686	TCA	synonymous	NA	NA	NA	NA
M5_p20	chr4	70448741	12A2p6	cell line	sgMsh2	70448741	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	229	0	0	NA	exonic	Megf9	frameshift deletion	Megf9:NM_172694:exon4:c.1003delT:p.Y335Ifs*17	4qC2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr4	74187548	12A2p6	cell line	sgMsh2	74187548	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	141	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon14:c.A1430G:p.D477G,Frmd3:NM_172869:exon14:c.A1430G:p.D477G"	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998881	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	74359422	12A2p6	cell line	sgMsh2	74359422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	138	0	0	NA	exonic	Kdm4c	stopgain	"Kdm4c:NM_001356561:exon16:c.G2087A:p.W696X,Kdm4c:NM_001172095:exon17:c.G2363A:p.W788X,Kdm4c:NM_144787:exon17:c.G2312A:p.W771X"	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998683	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	75278201	12A2p6	cell line	sgMsh2	75278201	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.378	22	0	0	NA	exonic	Dmac1	frameshift insertion	Dmac1:NM_025849:exon1:c.50dupC:p.T18Nfs*24	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	TTG	frameshift	G	5	GGGGG	1
M5_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	163	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999663	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	83263761	12A2p6	cell line	sgMsh2	83263761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	170	0	0	NA	exonic	Ttc39b	nonsynonymous SNV	Ttc39b:NM_027238:exon4:c.T220C:p.C74R	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.50727717	2	0.9946557	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	222	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999987	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	57	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9891899	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	67	0	0	NA	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9937061	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	25	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9410786	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr4	96479061	12A2p6	cell line	sgMsh2	96479061	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	134	0	0	NA	exonic	Cyp2j8	synonymous SNV	"Cyp2j8:NM_001370972:exon4:c.T387G:p.P129P,Cyp2j8:NM_001104927:exon5:c.T819G:p.P273P"	4qC5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998361	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr4	96479086	12A2p6	cell line	sgMsh2	96479086	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	133	0	0	NA	exonic	Cyp2j8	nonsynonymous SNV	"Cyp2j8:NM_001370972:exon4:c.A362T:p.D121V,Cyp2j8:NM_001104927:exon5:c.A794T:p.D265V"	4qC5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.999827	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	96629582	12A2p6	cell line	sgMsh2	96629582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	62	0	0	NA	exonic	Cyp2j5	synonymous SNV	Cyp2j5:NM_010007:exon9:c.T1392C:p.L464L	4qC5	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.991749	TAA	synonymous	NA	NA	NA	NA
M5_p20	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	253	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999998	CGA	synonymous	NA	NA	NA	NA
M5_p20	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997323	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M5_p20	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	151	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999352	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr4	104605307	12A2p6	cell line	sgMsh2	104605307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	57	0	0	NA	exonic	Dab1	nonsynonymous SNV	"Dab1:NM_010014:exon3:c.G77A:p.R26H,Dab1:NM_177259:exon3:c.G77A:p.R26H,Dab1:NM_001369046:exon5:c.G77A:p.R26H,Dab1:NM_001369048:exon5:c.G77A:p.R26H,Dab1:NM_001369047:exon6:c.G77A:p.R26H,Dab1:NM_001369049:exon6:c.G77A:p.R26H"	4qC6	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.881286609	1	0.9258028	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	104861386	12A2p6	cell line	sgMsh2	104861386	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	184	0	0	NA	exonic	C8a	nonsynonymous SNV	"C8a:NM_001290645:exon3:c.G239A:p.G80D,C8a:NM_001316667:exon4:c.G371A:p.G124D,C8a:NM_146148:exon4:c.G371A:p.G124D"	4qC6	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999893	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	106447658	12A2p6	cell line	sgMsh2	106447658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	62	0	0	NA	exonic	Pcsk9	synonymous SNV	Pcsk9:NM_153565:exon8:c.C1212T:p.S404S	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.657740737	2	0.8111862	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	132	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9998173	TAG	synonymous	GTA	8	GTAGTAGT	NA
M5_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	216	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999981	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	175	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999825	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	109244729	12A2p6	cell line	sgMsh2	109244729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	127	0	0	NA	exonic	Calr4	nonsynonymous SNV	"Calr4:NM_001033226:exon5:c.A701G:p.K234R,Calr4:NM_001285895:exon6:c.A758G:p.K253R,Calr4:NM_001285896:exon6:c.A380G:p.K127R,Calr4:NM_001285897:exon6:c.A380G:p.K127R,Calr4:NM_001285898:exon6:c.A380G:p.K127R"	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.99976	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	152	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999386	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	111890607	12A2p6	cell line	sgMsh2	111890607	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	0	0	NA	exonic	Slc5a9	nonsynonymous SNV	Slc5a9:NM_145551:exon8:c.C775T:p.R259W	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9963425	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	183	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999887	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr4	114409242	12A2p6	cell line	sgMsh2	114409242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	47	0	0	NA	exonic	Trabd2b	nonsynonymous SNV	Trabd2b:NM_001085549:exon2:c.T452C:p.F151S	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9814936	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	76	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9961382	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Vardict	2	0.293	18	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5_p20	chr4	115525899	12A2p6	cell line	sgMsh2	115525899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	381	0	0	NA	exonic	Cyp4a10	synonymous SNV	Cyp4a10:NM_010011:exon9:c.T1200C:p.D400D	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	1.23E-09	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	223	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999987	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	42	0	0	NA	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9758313	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M5_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	151	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999352	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	55	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.713627205	2	7.43E-05	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9949336	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	272	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999999	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	175	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999825	CAG	synonymous	GT	8	GTGTGTGT	NA
M5_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	144	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.999905	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	101	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9990096	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	107	0	0	NA	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9992858	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	204	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999964	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	106	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9992458	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	149	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999277	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	69	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9943529	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr4	126180268	12A2p6	cell line	sgMsh2	126180268	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	128	0	0	NA	exonic	Thrap3	synonymous SNV	"Thrap3:NM_146153:exon3:c.C684A:p.T228T,Thrap3:NM_001356455:exon4:c.C684A:p.T228T,Thrap3:NM_001356456:exon4:c.C684A:p.T228T"	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.739420959	2	0.8072378	AGG	synonymous	GGT	8	GGTGGTGG	NA
M5_p20	chr4	126355121	12A2p6	cell line	sgMsh2	126355121	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	99	0	0	NA	exonic	Ago3	stopgain	Ago3:NM_153402:exon13:c.C1636T:p.Q546X	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9988955	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	127935978	12A2p6	cell line	sgMsh2	127935978	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	106	0	0	NA	exonic	CK137956	nonsynonymous SNV	CK137956:NM_001134733:exon6:c.T1544C:p.M515T	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9992458	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	128616904	12A2p6	cell line	sgMsh2	128616904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	36	0	0	NA	exonic	Tlr12	nonsynonymous SNV	Tlr12:NM_205823:exon1:c.C1552A:p.L518M	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9667845	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	128909374	12A2p6	cell line	sgMsh2	128909374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	124	0	0	NA	exonic	Trim62	nonsynonymous SNV	"Trim62:NM_001370757:exon4:c.A1120G:p.R374G,Trim62:NM_001370756:exon5:c.A1234G:p.R412G,Trim62:NM_178110:exon5:c.A1216G:p.R406G"	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997173	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	19	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9200387	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	68	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9940382	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	100	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9989541	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	76	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	229	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999991	TTC	synonymous	NA	NA	NA	NA
M5_p20	chr4	132738385	12A2p6	cell line	sgMsh2	132738385	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	98	0	0	NA	exonic	Smpdl3b	nonsynonymous SNV	Smpdl3b:NM_133888:exon6:c.C723A:p.F241L	4qD2.3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9988337	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	21	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9277295	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	133294202	12A2p6	cell line	sgMsh2	133294202	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	11	0	0	NA	exonic	Wdtc1	nonsynonymous SNV	Wdtc1:NM_199306:exon16:c.T2020A:p.C674S	4qD2.3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.000970976	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	133582986	12A2p6	cell line	sgMsh2	133582986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	77	0	0	NA	exonic	Gpatch3	nonsynonymous SNV	Gpatch3:NM_172876:exon6:c.T1241C:p.I414T	4qD2.3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9963425	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	148	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999236	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9921835	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	72	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9952012	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	52	0	0	NA	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9858485	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	136241469	12A2p6	cell line	sgMsh2	136241469	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	28	0	0	NA	exonic	Asap3	nonsynonymous SNV	"Asap3:NM_001008232:exon22:c.G2224A:p.A742T,Asap3:NM_001355698:exon22:c.G1405A:p.A469T"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9495278	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	156	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999506	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	136657505	12A2p6	cell line	sgMsh2	136657505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	144	0	0	NA	exonic	Ephb2	nonsynonymous SNV	"Ephb2:NM_001290753:exon14:c.A2597C:p.K866T,Ephb2:NM_010142:exon14:c.A2594C:p.K865T"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.999905	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	137538433	12A2p6	cell line	sgMsh2	137538433	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	103	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon44:c.G5454T:p.M1818I	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9991118	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	121	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9996671	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	64	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9925954	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	15	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.09745711	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.373	50	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	95	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9986266	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	95	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9986266	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	141019224	12A2p6	cell line	sgMsh2	141019224	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	29	0	0	NA	exonic	Crocc	nonsynonymous SNV	"Crocc:NM_001145958:exon32:c.A4877C:p.E1626A,Crocc:NM_172122:exon33:c.A5369C:p.E1790A"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9520794	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	65	0	0	NA	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9929857	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.578	52	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9858485	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	141860564	12A2p6	cell line	sgMsh2	141860564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	53	0	0	NA	exonic	Efhd2	nonsynonymous SNV	Efhd2:NM_025994:exon3:c.A575G:p.N192S	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9865897	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	143135079	12A2p6	cell line	sgMsh2	143135079	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	180	0	0	NA	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.A1640C:p.D547A,Prdm2:NM_001256380:exon8:c.A1640C:p.D547A"	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999867	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	213	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999978	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	383	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	0.958667872	1	2.29E-08	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	148948928	12A2p6	cell line	sgMsh2	148948928	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	61	0	0	NA	exonic	Casz1	nonsynonymous SNV	Casz1:NM_001159344:exon20:c.G4156T:p.A1386S	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9912904	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	149106266	12A2p6	cell line	sgMsh2	149106266	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.323	181	0	0	NA	exonic	Dffa	nonsynonymous SNV	"Dffa:NM_001025296:exon2:c.A251G:p.K84R,Dffa:NM_010044:exon2:c.A251G:p.K84R"	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999874	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	150142827	12A2p6	cell line	sgMsh2	150142827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	34	0	0	NA	exonic	Slc2a5	nonsynonymous SNV	Slc2a5:NM_019741:exon13:c.A1199G:p.E400G	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9630971	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	40	0	0	NA	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416G:p.Y139C	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9731205	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	77	0	0	NA	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9963425	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	152028192	12A2p6	cell line	sgMsh2	152028192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	49	0	0	NA	exonic	Tas1r1	synonymous SNV	Tas1r1:NM_031867:exon6:c.G2403A:p.L801L	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	2	1	1	0.9833744	TCA	synonymous	NA	NA	NA	NA
M5_p20	chr4	154081548	12A2p6	cell line	sgMsh2	154081548	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	10	0	0	NA	exonic	Trp73	nonsynonymous SNV	"Trp73:NM_001126330:exon2:c.T63G:p.S21R,Trp73:NM_001126331:exon2:c.T63G:p.S21R,Trp73:NM_011642:exon4:c.T186G:p.S62R"	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.8745638	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	40	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9731205	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	82	0	0	NA	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9972131	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	130	0	0	NA	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9997962	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	108	0	0	NA	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9993237	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	223	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9999987	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr4	156166963	12A2p6	cell line	sgMsh2	156166963	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	60	0	0	NA	exonic	Agrn	synonymous SNV	"Agrn:NM_021604:exon35:c.C5895T:p.G1965G,Agrn:NM_001369026:exon37:c.C5643T:p.G1881G"	4qE2	chr4-3184971-156223608	3	2	1	0.97	4.169990295	NA	1	1	1	0.9908067	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	233	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999993	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	319	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	7.79E-09	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	156	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999506	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	158	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999557	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	123	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997015	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	75	0	0	NA	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9959226	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	5249050	12A2p6	cell line	sgMsh2	5249050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	175	0	0	NA	exonic	Cdk14	nonsynonymous SNV	"Cdk14:NM_001310448:exon2:c.T164C:p.I55T,Cdk14:NM_011074:exon3:c.T302C:p.I101T"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9810974	AAT	nonsynonymous	ATGC	10	ATGCATGCAT	NA
M5_p20	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.226	175	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9999242	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	186	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9960175	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	8397252	12A2p6	cell line	sgMsh2	8397252	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	69	0	0	NA	exonic	Dbf4	frameshift deletion	"Dbf4:NM_001190717:exon12:c.1954delT:p.S652Lfs*19,Dbf4:NM_013726:exon12:c.1957delT:p.S653Lfs*19"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M5_p20	chr5	8452763	12A2p6	cell line	sgMsh2	8452763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	244	0	0	NA	exonic	Slc25a40	nonsynonymous SNV	"Slc25a40:NM_001289595:exon10:c.A844G:p.M282V,Slc25a40:NM_001289596:exon11:c.A655G:p.M219V,Slc25a40:NM_178766:exon11:c.A844G:p.M282V"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	8864141	12A2p6	cell line	sgMsh2	8864141	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	375	0	0	NA	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon27:c.A3510C:p.K1170N	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.795307427	2	0.6771115	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	55	0	0	NA	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9879589	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	181	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9992862	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	139	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998753	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	14681547	12A2p6	cell line	sgMsh2	14681547	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	118	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon6:c.G10062A:p.E3354E,Pclo:NM_011995:exon6:c.G10062A:p.E3354E"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	AGA	synonymous	G	5	GGGGG	NA
M5_p20	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	134	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9954556	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	15031683	12A2p6	cell line	sgMsh2	15031683	C	A	SNV	Mutect2;Vardict	2	0.034	1086	0	0	NA	exonic	Gm17019	stopgain	Gm17019:NM_182957:exon2:c.G241T:p.E81X	5qA2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.146164608	3	1	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	145	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.670637614	2	0.9913888	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	20802050	12A2p6	cell line	sgMsh2	20802050	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	0	0	NA	exonic	Phtf2	nonsynonymous SNV	Phtf2:NM_172992:exon7:c.G514A:p.A172T	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9621405	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	167	0	0	NA	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.997358503	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M5_p20	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	271	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	21942605	12A2p6	cell line	sgMsh2	21942605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	80	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon46:c.A7346G:p.Y2449C	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	40	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9731205	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9237673	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	48	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9824588	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	34	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9630971	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	25261997	12A2p6	cell line	sgMsh2	25261997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	119	0	0	NA	exonic	Galnt11	synonymous SNV	"Galnt11:NM_001359890:exon9:c.T1296C:p.R432R,Galnt11:NM_144908:exon9:c.T1296C:p.R432R"	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	140	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998819	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	480	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	GAA	synonymous	NA	NA	NA	NA
M5_p20	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	77	0	0	NA	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9963425	ATT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	96	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	119	0	0	NA	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	154	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.999945	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.533	87	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M5_p20	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	175	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9999242	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M5_p20	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	170	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9998816	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M5_p20	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	86	0	0	NA	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	62	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9906448	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	143	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998997	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	358	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	1.81E-09	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	160	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999603	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M5_p20	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	142	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998941	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	140	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998819	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	33607752	12A2p6	cell line	sgMsh2	33607752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	42	0	0	NA	exonic	Fam53a	synonymous SNV	"Fam53a:NM_001359461:exon4:c.T609C:p.S203S,Fam53a:NM_001359462:exon5:c.T609C:p.S203S,Fam53a:NM_178390:exon5:c.T609C:p.S203S,Fam53a:NM_001359463:exon6:c.T339C:p.S113S"	5qB1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9758313	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	33671713	12A2p6	cell line	sgMsh2	33671713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	68	0	0	NA	exonic	Tacc3	synonymous SNV	"Tacc3:NM_001040435:exon14:c.A1755G:p.V585V,Tacc3:NM_001310541:exon14:c.A1776G:p.V592V"	5qB2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9940382	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	34500920	12A2p6	cell line	sgMsh2	34500920	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	209	0	0	NA	exonic	Tnip2	nonsynonymous SNV	Tnip2:NM_139064:exon3:c.G648T:p.Q216H	5qB2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999973	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	207	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999969	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	82	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9972131	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	37370632	12A2p6	cell line	sgMsh2	37370632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	114	0	0	NA	exonic	Evc2	synonymous SNV	Evc2:NM_145920:exon8:c.T984C:p.G328G	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995124	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr5	38673669	12A2p6	cell line	sgMsh2	38673669	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	189	0	0	NA	exonic	Zfp518b	nonsynonymous SNV	"Zfp518b:NM_001177902:exon3:c.C992T:p.P331L,Zfp518b:NM_001081144:exon4:c.C992T:p.P331L"	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999918	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	43736066	12A2p6	cell line	sgMsh2	43736066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	104	0	0	NA	exonic	Cc2d2a	synonymous SNV	"Cc2d2a:NM_001359905:exon35:c.A4350G:p.P1450P,Cc2d2a:NM_001359906:exon35:c.A4350G:p.P1450P,Cc2d2a:NM_001359903:exon36:c.A4371G:p.P1457P,Cc2d2a:NM_001359904:exon36:c.A4365G:p.P1455P,Cc2d2a:NM_172274:exon37:c.A4386G:p.P1462P"	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.760915755	2	9.11E-09	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	48388106	12A2p6	cell line	sgMsh2	48388106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	541	0	0	NA	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon9:c.A694G:p.S232G	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.9971046	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	49960319	12A2p6	cell line	sgMsh2	49960319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	174	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3886G:p.T1296A	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999815	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	141	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998881	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	43	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9770849	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	62	0	0	NA	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.769513673	1	0.6413734	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	186	0	0	NA	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999822	GTT	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	249	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	62748989	12A2p6	cell line	sgMsh2	62748989	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	174	0	0	NA	exonic	Arap2	frameshift deletion	Arap2:NM_178407:exon2:c.686delA:p.N229Tfs*6	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M5_p20	chr5	62749178	12A2p6	cell line	sgMsh2	62749178	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	201	0	0	NA	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon2:c.A497T:p.D166V	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.730823041	2	0.9723594	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	63804939	12A2p6	cell line	sgMsh2	63804939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	180	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A1865G:p.H622R	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9990743	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	272	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	65030114	12A2p6	cell line	sgMsh2	65030114	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	0	0	NA	exonic	Fam114a1	nonsynonymous SNV	Fam114a1:NM_026667:exon10:c.C1214T:p.S405L	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.6902244	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	65	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9929857	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	65637841	12A2p6	cell line	sgMsh2	65637841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	178	0	0	NA	exonic	Pds5a	nonsynonymous SNV	Pds5a:NM_001081321:exon19:c.A2051G:p.Q684R	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.999958	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	68	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9940382	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	176	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	68155875	12A2p6	cell line	sgMsh2	68155875	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	170	0	0	NA	exonic	Grxcr1	nonsynonymous SNV	Grxcr1:NM_001018019:exon3:c.C694A:p.L232I	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.8180364	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	143	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998997	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	53	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.812503264	1	0.7977242	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	229	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999991	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr5	75640733	12A2p6	cell line	sgMsh2	75640733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	119	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon11:c.A1691G:p.E564G,Kit:NM_021099:exon11:c.A1679G:p.E560G"	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	158	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999557	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.786	121	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M5_p20	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	121	0	0	NA	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	152	0	0	NA	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.545967801	2	0.9996458	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	80	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	ATT	synonymous	NA	NA	NA	NA
M5_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	160	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999603	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	200	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.709328246	2	0.9918501	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	199	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999953	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87486579	12A2p6	cell line	sgMsh2	87486579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	146	0	0	NA	exonic	Ugt2a1	synonymous SNV	Ugt2a1:NM_053184:exon2:c.C168T:p.S56S	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9998852	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr5	87521609	12A2p6	cell line	sgMsh2	87521609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	exonic	Sult1b1	nonsynonymous SNV	"Sult1b1:NM_001382837:exon4:c.A379G:p.I127V,Sult1b1:NM_001356943:exon5:c.A379G:p.I127V,Sult1b1:NM_019878:exon5:c.A379G:p.I127V"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.994651	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	120	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9996484	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	196	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999944	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	154	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9789437	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	87930167	12A2p6	cell line	sgMsh2	87930167	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	92	0	0	NA	exonic	Csn3	synonymous SNV	"Csn3:NM_001356571:exon3:c.C501A:p.S167S,Csn3:NM_001356570:exon4:c.C531A:p.S177S,Csn3:NM_007786:exon4:c.C531A:p.S177S"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9983829	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr5	88328605	12A2p6	cell line	sgMsh2	88328605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	279	0	0	NA	exonic	Prol1	nonsynonymous SNV	Prol1:NM_008644:exon3:c.A853G:p.T285A	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	88503032	12A2p6	cell line	sgMsh2	88503032	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	209	0	0	NA	exonic	Enam	nonsynonymous SNV	Enam:NM_017468:exon10:c.A2174T:p.N725I	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.300927135	3	3.52E-08	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	210	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999974	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	208	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999971	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	205	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999966	AAC	synonymous	A	5	AAAAA	NA
M5_p20	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	254	0	0	NA	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	151	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999352	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	92039286	12A2p6	cell line	sgMsh2	92039286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	377	0	0	NA	exonic	Cdkl2	synonymous SNV	"Cdkl2:NM_001276315:exon2:c.T120C:p.D40D,Cdkl2:NM_016912:exon2:c.T120C:p.D40D,Cdkl2:NM_177270:exon2:c.T120C:p.D40D"	5qE2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	1.29E-09	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	323	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	6.46E-09	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	92454754	12A2p6	cell line	sgMsh2	92454754	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	168	0	0	NA	exonic	Scarb2	nonsynonymous SNV	Scarb2:NM_007644:exon6:c.C802T:p.L268F	5qE2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999743	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	99964721	12A2p6	cell line	sgMsh2	99964721	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	187	0	0	NA	exonic	Hnrnpd	synonymous SNV	"Hnrnpd:NM_001077266:exon4:c.G645A:p.E215E,Hnrnpd:NM_001077267:exon4:c.G645A:p.E215E,Hnrnpd:NM_001077265:exon5:c.G702A:p.E234E,Hnrnpd:NM_007516:exon5:c.G702A:p.E234E"	5qE4	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999909	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	57	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9891899	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	101851258	12A2p6	cell line	sgMsh2	101851258	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	96	0	0	NA	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon60:c.G9291A:p.K3097K	5qE4	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr5	101872900	12A2p6	cell line	sgMsh2	101872900	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	28	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon46:c.G7483T:p.G2495C	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9495278	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	144	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.999905	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	107	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992858	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	89	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9980959	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	326	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	5.64E-09	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	333	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	4.17E-09	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	96	0	0	NA	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr5	106619558	12A2p6	cell line	sgMsh2	106619558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	464	0	0	NA	exonic	Zfp644	nonsynonymous SNV	"Zfp644:NM_001363323:exon5:c.T3593C:p.V1198A,Zfp644:NM_001363320:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363321:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363322:exon6:c.T3635C:p.V1212A,Zfp644:NM_026856:exon6:c.T3668C:p.V1223A,Zfp644:NM_001363319:exon7:c.T3668C:p.V1223A,Zfp644:NM_001363318:exon9:c.T3668C:p.V1223A"	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	130	0	0	NA	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997962	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	109	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9993596	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	42	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.765214714	1	7.20E-05	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	109453011	12A2p6	cell line	sgMsh2	109453011	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	408	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon6:c.C2174T:p.T725I,Vmn2r17:NM_001385190:exon6:c.C2171T:p.T724I"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	3.67E-08	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	110100217	12A2p6	cell line	sgMsh2	110100217	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.29	83	0	0	NA	exonic	Plcxd1	frameshift insertion	Plcxd1:NM_207279:exon2:c.31_32insA:p.P11Hfs*15	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ACC	frameshift	CCCCA	14	CCCCACCCCACCCC	1
M5_p20	chr5	110124414	12A2p6	cell line	sgMsh2	110124414	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	235	0	0	NA	exonic	Zfp605	nonsynonymous SNV	Zfp605:NM_001163996:exon4:c.G198T:p.M66I	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9999547	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	110370976	12A2p6	cell line	sgMsh2	110370976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	48	0	0	NA	exonic	Fbrsl1	synonymous SNV	"Fbrsl1:NM_028596:exon11:c.T918C:p.P306P,Fbrsl1:NM_001142642:exon18:c.T2232C:p.P744P"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9824588	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	110668744	12A2p6	cell line	sgMsh2	110668744	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	28	0	0	NA	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon47:c.C8180T:p.T2727I,Ep400:NM_029337:exon48:c.C8288T:p.T2763I"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9495278	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	110735372	12A2p6	cell line	sgMsh2	110735372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	141	0	0	NA	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon5:c.A2087G:p.K696R,Ep400:NM_029337:exon6:c.A2195G:p.K732R"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998881	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	111386541	12A2p6	cell line	sgMsh2	111386541	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	220	0	0	NA	exonic	Pitpnb	synonymous SNV	"Pitpnb:NM_001301666:exon10:c.C723T:p.A241A,Pitpnb:NM_001301643:exon11:c.C807T:p.A269A,Pitpnb:NM_001359215:exon11:c.C804T:p.A268A,Pitpnb:NM_001359217:exon11:c.C588T:p.A196A"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.404102152	3	0.9974055	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr5	112782599	12A2p6	cell line	sgMsh2	112782599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	224	0	0	NA	exonic	Myo18b	nonsynonymous SNV	Myo18b:NM_028901:exon33:c.A5470G:p.T1824A	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9999755	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	128	0	0	NA	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997727	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	82	0	0	NA	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.808204305	1	0.7771401	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	63	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9921835	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	116006089	12A2p6	cell line	sgMsh2	116006089	A	-	Deletion	Mutect2;Strelka2	2	0.298	29	0	0	NA	exonic	Cit	frameshift deletion	Cit:NM_007708:exon46:c.6142delA:p.K2048Rfs*13	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	79	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	117893925	12A2p6	cell line	sgMsh2	117893925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	21	0	0	NA	exonic	Nos1	nonsynonymous SNV	Nos1:NM_008712:exon3:c.A937G:p.T313A	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9277295	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	118593540	12A2p6	cell line	sgMsh2	118593540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	115	0	0	NA	exonic	Med13l	nonsynonymous SNV	"Med13l:NM_001347445:exon2:c.C280A:p.L94I,Med13l:NM_172424:exon2:c.C280A:p.L94I"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995382	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	101	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.748018878	2	0.6404922	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	48	0	0	NA	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr5	121519747	12A2p6	cell line	sgMsh2	121519747	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	353	0	0	NA	exonic	Adam1a	synonymous SNV	Adam1a:NM_172126:exon1:c.C1482T:p.C494C	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	2.06E-09	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr5	121828483	12A2p6	cell line	sgMsh2	121828483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	24	0	0	NA	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.A567G:p.A189A,Sh2b3:NM_008507:exon2:c.A567G:p.A189A,Sh2b3:NM_001306126:exon3:c.A567G:p.A189A,Sh2b3:NM_001306127:exon3:c.A567G:p.A189A"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9379775	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	74	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	123512548	12A2p6	cell line	sgMsh2	123512548	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.278	88	0	0	NA	exonic	Diablo	frameshift insertion	Diablo:NM_023232:exon6:c.676dupG:p.A226Gfs*1	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AGC	frameshift	C	5	CCCCC	1
M5_p20	chr5	123520048	12A2p6	cell line	sgMsh2	123520048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	171	0	0	NA	exonic	Diablo	nonsynonymous SNV	Diablo:NM_023232:exon3:c.A302G:p.Y101C	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.812503264	1	0.7847821	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	193	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999934	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	125	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.657740737	2	0.9875309	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	93	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9984686	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	201	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999958	GTG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	71	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9949336	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	124123005	12A2p6	cell line	sgMsh2	124123005	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	109	0	0	NA	exonic	Pitpnm2	synonymous SNV	"Pitpnm2:NM_001289472:exon21:c.A3105G:p.S1035S,Pitpnm2:NM_011256:exon21:c.A2943G:p.S981S"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993596	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	174	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999815	AAA	synonymous	NA	NA	NA	NA
M5_p20	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	257	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9919594	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	128742036	12A2p6	cell line	sgMsh2	128742036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	165	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon7:c.G578T:p.R193M	5qG1.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999577	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	144	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.999905	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	129902624	12A2p6	cell line	sgMsh2	129902624	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	171	0	0	NA	exonic	Zbed5	synonymous SNV	"Zbed5:NM_183088:exon4:c.A1413C:p.R471R,Zbed5:NM_001359408:exon5:c.A1350C:p.R450R"	5qG1.3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9992064	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	142	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9997972	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	96	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9940045	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	135961956	12A2p6	cell line	sgMsh2	135961956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	111	0	0	NA	exonic	Ssc4d	synonymous SNV	Ssc4d:NM_001160366:exon10:c.A1377G:p.E459E	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.545967801	2	0.9975442	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	216	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.9480635	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	136064148	12A2p6	cell line	sgMsh2	136064148	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	82	0	0	NA	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.C727A:p.L243I,Upk3bl:NM_027158:exon6:c.C730A:p.L244I"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9972131	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	137031954	12A2p6	cell line	sgMsh2	137031954	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.445	12	0	0	NA	exonic	Vgf	synonymous SNV	Vgf:NM_001039385:exon2:c.A969G:p.Q323Q	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.8865268	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr5	137290481	12A2p6	cell line	sgMsh2	137290481	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	143	0	0	NA	exonic	Ache	nonsynonymous SNV	"Ache:NM_001290010:exon2:c.T448G:p.Y150D,Ache:NM_009599:exon2:c.T448G:p.Y150D"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.27513338	3	0.9999982	CTA	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr5	137563146	12A2p6	cell line	sgMsh2	137563146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	262	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon5:c.A409G:p.M137V	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999996	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	137577754	12A2p6	cell line	sgMsh2	137577754	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	33	0	0	NA	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon8:c.C1040T:p.P347L,Tfr2:NM_001289511:exon9:c.C1040T:p.P347L,Tfr2:NM_001359206:exon9:c.C1040T:p.P347L,Tfr2:NM_001289509:exon10:c.C1040T:p.P347L,Tfr2:NM_015799:exon10:c.C1040T:p.P347L"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.8533564	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	145	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.999748	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	91	0	0	NA	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9982924	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	141	0	0	NA	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998881	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	138163817	12A2p6	cell line	sgMsh2	138163817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	203	0	0	NA	exonic	Cops6	nonsynonymous SNV	Cops6:NM_012002:exon10:c.T916C:p.F306L	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999962	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	240	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999995	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	162	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999644	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	88	0	0	NA	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M5_p20	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	17	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.225	128	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9992199	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.22	131	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9984391	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	145986842	12A2p6	cell line	sgMsh2	145986842	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	282	0	0	NA	exonic	Cyp3a25	frameshift deletion	Cyp3a25:NM_019792:exon10:c.990delA:p.K330Nfs*20	5qG2	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	364	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	2	1	1	1.58E-09	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	94	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	200	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344436-151647482	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8557992	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.429	101	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M5_p20	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	251	0	0	NA	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.558864679	2	0.9999991	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	111	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.954368913	1	0.9974533	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M5_p20	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	204	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	2	0.8276017	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	275	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999999	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M5_p20	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	361	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.640544901	2	3.80E-08	TGC	synonymous	NA	NA	NA	NA
M5_p20	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	23	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	0.9347234	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	155	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999479	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	286	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.399803193	3	0.999863	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.238	174	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999815	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M5_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1757	222	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.755327108	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	118	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.438493825	3	0.5597542	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M5_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	374	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.739420959	2	0.9989825	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	15403822	12A2p6	cell line	sgMsh2	15403822	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	360	0	0	NA	exonic	Foxp2	frameshift deletion	"Foxp2:NM_001286607:exon9:c.1034delT:p.N346Tfs*23,Foxp2:NM_212435:exon9:c.1097delT:p.N367Tfs*23,Foxp2:NM_053242:exon11:c.1097delT:p.N367Tfs*23"	6qA1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.812503264	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	336	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.739420959	2	0.9976391	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	17563555	12A2p6	cell line	sgMsh2	17563555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	129	0	0	NA	exonic	Met	synonymous SNV	Met:NM_008591:exon20:c.T3628C:p.L1210L	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.528771965	2	0.9970741	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	238	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.773812632	2	0.8118681	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	229	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.791008468	2	0.5483899	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	18319747	12A2p6	cell line	sgMsh2	18319747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	189	0	0	NA	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon26:c.G4196T:p.R1399M	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.709328246	2	0.9885707	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	444	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.821101182	1	0.09652247	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	21216494	12A2p6	cell line	sgMsh2	21216494	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	268	0	0	NA	exonic	Kcnd2	synonymous SNV	Kcnd2:NM_019697:exon1:c.C196T:p.L66L	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.429895907	3	0.9798866	TCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	205	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.713627205	2	0.9909625	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.748	327	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	4	1	1	5.39E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M5_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	270	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.778111591	2	0.8185028	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	25669521	12A2p6	cell line	sgMsh2	25669521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	241	0	0	NA	exonic	Gpr37	synonymous SNV	Gpr37:NM_010338:exon2:c.C1323T:p.P441P	6qA3.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.451390702	3	0.6311367	TGG	synonymous	NA	NA	NA	NA
M5_p20	chr6	25764252	12A2p6	cell line	sgMsh2	25764252	T	-	Deletion	Mutect2;Vardict	2	0.146	81	0	0	NA	exonic	Pot1a	frameshift deletion	Pot1a:NM_133931:exon9:c.875delA:p.A293Lfs*1	6qA3.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.627648024	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr6	29380157	12A2p6	cell line	sgMsh2	29380157	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	92	0	0	NA	exonic	Opn1sw	nonsynonymous SNV	Opn1sw:NM_007538:exon1:c.T259G:p.F87V	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.45998862	2	0.7757578	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	29447598	12A2p6	cell line	sgMsh2	29447598	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	112	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon21:c.T3399C:p.N1133N,Flnc:NM_001311074:exon21:c.T3399C:p.N1133N"	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9994562	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	190	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.748018878	2	0.9110503	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	81	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.859791813	1	0.9228283	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	162	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.666338655	2	0.9965727	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	31398872	12A2p6	cell line	sgMsh2	31398872	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	19	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon1:c.G16A:p.A6T	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.859791813	1	0.8396749	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	334	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.8296991	1	0.9466798	AAC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr6	34798229	12A2p6	cell line	sgMsh2	34798229	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	195	0	0	NA	exonic	Agbl3	frameshift deletion	"Agbl3:NM_178630:exon6:c.454delG:p.G153Vfs*5,Agbl3:NM_001289656:exon7:c.469delG:p.G158Vfs*5"	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.722225123	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr6	34799587	12A2p6	cell line	sgMsh2	34799587	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	294	0	0	NA	exonic	Agbl3	nonsynonymous SNV	"Agbl3:NM_001289657:exon7:c.T298C:p.Y100H,Agbl3:NM_178630:exon7:c.T1012C:p.Y338H,Agbl3:NM_001289656:exon8:c.T1027C:p.Y343H"	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.210648994	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	34896279	12A2p6	cell line	sgMsh2	34896279	G	A	SNV	Mutect2;Vardict	2	0.074	79	0	0	NA	exonic	Wdr91	nonsynonymous SNV	Wdr91:NM_001013366:exon7:c.C955T:p.P319S	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.318122971	3	0.9913247	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	197	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.898482445	1	0.9980998	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	250	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.778111591	2	0.7842175	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	318	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.730823041	2	0.9984253	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	80	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.945770995	1	0.9889422	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M5_p20	chr6	40516153	12A2p6	cell line	sgMsh2	40516153	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	353	0	0	NA	exonic	Prss37	synonymous SNV	Prss37:NM_026317:exon4:c.G378T:p.R126R	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.356813603	3	4.26E-09	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	367	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.705029287	2	0.9999711	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	284	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.855492854	1	0.9919475	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	219	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.739420959	2	0.9692572	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr6	41033155	12A2p6	cell line	sgMsh2	41033155	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	351	0	0	NA	exonic	2210010C04Rik	nonsynonymous SNV	2210010C04Rik:NM_023333:exon3:c.C244A:p.L82I	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.584658433	2	1.19E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;MuSe;Vardict	3	0.072	765	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.309525053	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	247	0	0	NA	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.735122	2	0.9876867	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Strelka2;Vardict	2	0.0982	112	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.42215778	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	232	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.705029287	2	0.9977367	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr6	42460583	12A2p6	cell line	sgMsh2	42460583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	488	0	0	NA	exonic	Olfr458	synonymous SNV	Olfr458:NM_146444:exon1:c.A435G:p.A145A	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.735122	2	0.9999562	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	123	0	0	NA	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9997015	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr6	42686617	12A2p6	cell line	sgMsh2	42686617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	304	0	0	NA	exonic	Tcaf1	nonsynonymous SNV	"Tcaf1:NM_001355768:exon2:c.A328G:p.I110V,Tcaf1:NM_001355769:exon2:c.A328G:p.I110V,Tcaf1:NM_029930:exon2:c.A328G:p.I110V,Tcaf1:NM_001355770:exon3:c.A328G:p.I110V"	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.279432339	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	110	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.571761556	2	0.998029	ATG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	173	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	0.9999805	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	427	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.769513673	2	0.9863661	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	46015235	12A2p6	cell line	sgMsh2	46015235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	174	0	0	NA	exonic	Cntnap2	synonymous SNV	Cntnap2:NM_001004357:exon8:c.T1095C:p.S365S	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.537369883	2	0.9997033	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr6	46015479	12A2p6	cell line	sgMsh2	46015479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	136	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon8:c.A1339G:p.I447V	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.8296991	1	0.8813865	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	180	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9706058	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	46988685	12A2p6	cell line	sgMsh2	46988685	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon16:c.T2429C:p.L810P	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.300927135	3	1.41E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	194	0	0	NA	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.730823041	2	0.9673094	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	96	0	0	NA	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.872688691	1	0.9545607	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	48044616	12A2p6	cell line	sgMsh2	48044616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	196	0	0	NA	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon2:c.C203T:p.P68L,Zfp777:NM_001347139:exon2:c.C71T:p.P24L"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.96726579	1	0.9999632	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	36	0	0	NA	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	0.9667845	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	114	0	0	NA	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.773812632	1	0.5082147	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	117	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.69213241	2	0.9436026	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	48485453	12A2p6	cell line	sgMsh2	48485453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	64	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon74:c.C11157A:p.T3719T	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9925954	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.13	59	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.558864679	2	0.9445746	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	119	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.343916725	3	0.9982036	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	48835600	12A2p6	cell line	sgMsh2	48835600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	299	0	0	NA	exonic	Tmem176b	synonymous SNV	"Tmem176b:NM_001164207:exon5:c.T430C:p.L144L,Tmem176b:NM_001164208:exon5:c.T430C:p.L144L,Tmem176b:NM_001286652:exon5:c.T430C:p.L144L,Tmem176b:NM_023056:exon5:c.T430C:p.L144L,Tmem176b:NM_001164209:exon6:c.T430C:p.L144L,Tmem176b:NM_001286651:exon6:c.T430C:p.L144L"	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	2.12E-08	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	82	0	0	NA	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.511576129	2	0.9699509	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Strelka2;Vardict	2	0.2727	11	0	0	NA	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr6	52243398	12A2p6	cell line	sgMsh2	52243398	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	191	0	0	NA	exonic	Hoxa11	nonsynonymous SNV	Hoxa11:NM_010450:exon2:c.G904A:p.D302N	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.365411521	3	0.9998678	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	71	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.623349065	2	0.9300553	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	162	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.851193895	1	0.9587246	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	56850697	12A2p6	cell line	sgMsh2	56850697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	350	0	0	NA	exonic	Fkbp9	nonsynonymous SNV	Fkbp9:NM_012056:exon3:c.T502C:p.F168L	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.748018878	2	0.99581	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	677	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.335318807	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	424	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	2	0.9994257	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57522835	12A2p6	cell line	sgMsh2	57522835	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	163	0	0	NA	exonic	Ppm1k	nonsynonymous SNV	Ppm1k:NM_175523:exon3:c.G455T:p.R152L	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.352514643	3	0.9997991	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	202	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.8296991	1	0.09145762	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	251	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999997	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr6	57659700	12A2p6	cell line	sgMsh2	57659700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	169	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon19:c.T2400C:p.C800C	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.709328246	2	0.9789419	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Vardict	2	0.205	158	0	0	NA	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.881286609	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.214	162	0	0	NA	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.91997724	1	0.9983844	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	57844095	12A2p6	cell line	sgMsh2	57844095	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	357	0	0	NA	exonic	Vmn1r21	frameshift deletion	Vmn1r21:NM_134183:exon1:c.363delA:p.K121Nfs*2	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.915678281	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	288	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.786709509	2	0.7253882	GTA	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr6	58215111	12A2p6	cell line	sgMsh2	58215111	A	C	SNV	Mutect2;Vardict	2	0.099	46	0	0	NA	exonic	Vmn1r27	nonsynonymous SNV	Vmn1r27:NM_134436:exon1:c.T907G:p.L303V	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.425596948	2	0.6357484	AAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr6	58665255	12A2p6	cell line	sgMsh2	58665255	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	143	0	0	NA	exonic	Abcg2	nonsynonymous SNV	"Abcg2:NM_001381927:exon5:c.A527C:p.K176T,Abcg2:NM_011920:exon5:c.A527C:p.K176T,Abcg2:NM_001355477:exon6:c.A527C:p.K176T,Abcg2:NM_001381925:exon6:c.A527C:p.K176T,Abcg2:NM_001381926:exon6:c.A527C:p.K176T"	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.722225123	2	0.9233657	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	207	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.971564749	1	0.9999827	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	155	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.773812632	2	0.6133632	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	65056521	12A2p6	cell line	sgMsh2	65056521	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	233	0	0	NA	exonic	Smarcad1	nonsynonymous SNV	"Smarcad1:NM_001355250:exon4:c.A487T:p.T163S,Smarcad1:NM_007958:exon4:c.A487T:p.T163S"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.756616796	2	0.9296731	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	65123582	12A2p6	cell line	sgMsh2	65123582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	476	0	0	NA	exonic	Hpgds	synonymous SNV	Hpgds:NM_019455:exon5:c.C411T:p.D137D	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	2	0.9960764	TGT	synonymous	NA	NA	NA	NA
M5_p20	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.036	424	0	0	NA	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.154762526	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9997465	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	296	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.803905345	1	0.6133316	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	279	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.78241055	2	0.7773319	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	141	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.924276199	1	0.997412	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	101	0	0	NA	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.911379322	1	0.9863573	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	151	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	0.9999352	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	76882551	12A2p6	cell line	sgMsh2	76882551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	123	0	0	NA	exonic	Ctnna2	stoploss	"Ctnna2:NM_001355193:exon18:c.A2717G:p.X906W,Ctnna2:NM_009819:exon19:c.A2861G:p.X954W,Ctnna2:NM_145732:exon19:c.A2717G:p.X906W,Ctnna2:NM_001109764:exon20:c.A2861G:p.X954W"	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.59755531	2	0.9984003	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	77653171	12A2p6	cell line	sgMsh2	77653171	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	102	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon4:c.G299A:p.G100D,Ctnna2:NM_009819:exon4:c.G299A:p.G100D,Ctnna2:NM_001109764:exon5:c.G299A:p.G100D,Ctnna2:NM_145732:exon5:c.G299A:p.G100D"	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.833998059	1	0.8792315	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	78382294	12A2p6	cell line	sgMsh2	78382294	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	256	0	0	NA	exonic	Reg3a	synonymous SNV	Reg3a:NM_011259:exon4:c.G276A:p.V92V	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.696431369	2	0.9994539	TGA	synonymous	NA	NA	NA	NA
M5_p20	chr6	78467548	12A2p6	cell line	sgMsh2	78467548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	223	0	0	NA	exonic	Reg3g	synonymous SNV	Reg3g:NM_011260:exon4:c.C261T:p.F87F	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.352514643	3	0.9999952	GGA	synonymous	AGGA	10	AGGAAGGAAG	NA
M5_p20	chr6	80022136	12A2p6	cell line	sgMsh2	80022136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	86	0	0	NA	exonic	Lrrtm4	frameshift deletion	"Lrrtm4:NM_001134743:exon2:c.530delT:p.Q179Kfs*27,Lrrtm4:NM_001282102:exon2:c.530delT:p.Q179Kfs*27,Lrrtm4:NM_001347261:exon2:c.527delT:p.Q178Kfs*27,Lrrtm4:NM_178731:exon2:c.527delT:p.Q178Kfs*27"	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.631946983	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	168	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.902781404	1	0.996864	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	88	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9979894	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	141	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.980162667	1	0.9997451	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	83183086	12A2p6	cell line	sgMsh2	83183086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	289	0	0	NA	exonic	Dctn1	nonsynonymous SNV	"Dctn1:NM_001198866:exon3:c.A256G:p.T86A,Dctn1:NM_001198867:exon3:c.A256G:p.T86A,Dctn1:NM_007835:exon3:c.A307G:p.T103A"	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.842595977	1	0.977603	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	121	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9996671	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	85467134	12A2p6	cell line	sgMsh2	85467134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	227	0	0	NA	exonic	Cct7	nonsynonymous SNV	Cct7:NM_007638:exon10:c.T1178C:p.I393T	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.528771965	2	0.9998831	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	85808552	12A2p6	cell line	sgMsh2	85808552	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	266	0	0	NA	exonic	Nat8f6	nonsynonymous SNV	Nat8f6:NM_001201389:exon3:c.C614A:p.S205Y	6qC3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.709328246	2	0.9989422	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	82	0	0	NA	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.576060515	2	0.9857405	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	293	0	0	NA	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.911379322	1	0.9999413	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr6	86462625	12A2p6	cell line	sgMsh2	86462625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	317	0	0	NA	exonic	C87436	nonsynonymous SNV	"C87436:NM_001243741:exon8:c.T1267C:p.Y423H,C87436:NM_001243742:exon8:c.T1297C:p.Y433H,C87436:NM_001364555:exon8:c.T1297C:p.Y433H,C87436:NM_001364556:exon8:c.T1297C:p.Y433H,C87436:NM_001364557:exon8:c.T1297C:p.Y433H,C87436:NM_001364558:exon8:c.T1267C:p.Y423H,C87436:NM_146170:exon8:c.T1297C:p.Y433H"	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.752317837	2	0.9881213	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	87288801	12A2p6	cell line	sgMsh2	87288801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	299	0	0	NA	exonic	Antxr1	nonsynonymous SNV	Antxr1:NM_054041:exon4:c.T329C:p.V110A	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.593256351	2	1.49E-08	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	178	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999851	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M5_p20	chr6	87779444	12A2p6	cell line	sgMsh2	87779444	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	62	0	0	NA	exonic	Gp9	nonsynonymous SNV	Gp9:NM_018762:exon2:c.G440A:p.G147E	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.679235533	2	0.7438944	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	87904860	12A2p6	cell line	sgMsh2	87904860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	146	0	0	NA	exonic	Copg1	nonsynonymous SNV	Copg1:NM_017477:exon17:c.T1693C:p.Y565H	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.567462597	2	0.9998232	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	153	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	2	0.6952345	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	90	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.429895907	3	6.81E-05	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	88376284	12A2p6	cell line	sgMsh2	88376284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	264	0	0	NA	exonic	Eefsec	nonsynonymous SNV	Eefsec:NM_023060:exon2:c.A402G:p.I134M	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.588957392	2	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	89323308	12A2p6	cell line	sgMsh2	89323308	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	196	0	0	NA	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon27:c.C4792A:p.L1598I	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	2	0.9365853	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	527	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.799606386	2	0.7199139	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	197	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.653441778	2	0.9996476	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	93694158	12A2p6	cell line	sgMsh2	93694158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	339	0	0	NA	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon18:c.A2425T:p.S809C,Magi1:NM_001083321:exon18:c.A2425T:p.S809C,Magi1:NM_001286784:exon18:c.A3070T:p.S1024C,Magi1:NM_001286786:exon18:c.A3070T:p.S1024C,Magi1:NM_001286788:exon18:c.A2419T:p.S807C,Magi1:NM_001029850:exon19:c.A3073T:p.S1025C,Magi1:NM_001286785:exon19:c.A3109T:p.S1037C"	6qD1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	3.28E-09	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	192	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.950069954	1	0.9998835	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	422	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.619050106	2	1.11E-09	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	101155901	12A2p6	cell line	sgMsh2	101155901	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	286	0	0	NA	exonic	Pdzrn3	nonsynonymous SNV	Pdzrn3:NM_018884:exon7:c.G1385A:p.G462E	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.588957392	2	2.60E-09	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	102165349	12A2p6	cell line	sgMsh2	102165349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	294	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon22:c.T3056C:p.L1019P	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	1	0.9976479	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	102208445	12A2p6	cell line	sgMsh2	102208445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	110	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon14:c.A1814G:p.K605R	6qD3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	0.9993936	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	103649552	12A2p6	cell line	sgMsh2	103649552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	284	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon5:c.A260C:p.N87T	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.937173077	1	0.9999912	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	104832538	12A2p6	cell line	sgMsh2	104832538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	258	0	0	NA	exonic	Cntn6	synonymous SNV	Cntn6:NM_017383:exon13:c.T1533C:p.V511V	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9999998	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr6	104845848	12A2p6	cell line	sgMsh2	104845848	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	145	0	0	NA	exonic	Cntn6	stopgain	Cntn6:NM_017383:exon18:c.G2359T:p.G787X	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.614751147	2	0.9991996	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	106344780	12A2p6	cell line	sgMsh2	106344780	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	319	0	0	NA	exonic	Cntn4	nonsynonymous SNV	"Cntn4:NM_001364565:exon4:c.A97C:p.S33R,Cntn4:NM_001109751:exon5:c.A97C:p.S33R,Cntn4:NM_001364566:exon5:c.A97C:p.S33R,Cntn4:NM_001109749:exon6:c.A97C:p.S33R,Cntn4:NM_173004:exon6:c.A97C:p.S33R"	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.78241055	2	0.8363331	AAG	nonsynonymous	GTCAT	12	GTCATGTCATGT	NA
M5_p20	chr6	107567368	12A2p6	cell line	sgMsh2	107567368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	281	0	0	NA	exonic	Lrrn1	synonymous SNV	Lrrn1:NM_008516:exon2:c.T126C:p.P42P	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.760915755	2	0.9546853	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	208	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.872688691	1	0.9930035	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	210	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.915678281	1	0.9995231	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	107569194	12A2p6	cell line	sgMsh2	107569194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	295	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A1952G:p.Y651C	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.898482445	1	0.9998301	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	88	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.96726579	1	0.9953169	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	151	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.687833451	2	0.9857423	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M5_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	129	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.842595977	1	0.9216308	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	111066876	12A2p6	cell line	sgMsh2	111066876	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	213	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon3:c.T851G:p.V284G,Grm7:NM_177328:exon3:c.T851G:p.V284G"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.391205275	3	0.9992464	GTG	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr6	113138031	12A2p6	cell line	sgMsh2	113138031	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	143	0	0	NA	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon16:c.C2612T:p.S871F,Setd5:NM_028385:exon17:c.C2555T:p.S852F"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.791008468	1	0.6004344	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	193	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.511576129	2	0.9978863	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	91	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.954368913	1	0.9942239	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	532	0	0	NA	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.868389731	1	0.999945	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	196	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.567462597	2	0.999992	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	287	0	0	NA	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.91997724	1	0.9999663	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	127	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.821101182	1	0.8381475	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	114701198	12A2p6	cell line	sgMsh2	114701198	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	304	0	0	NA	exonic	Atg7	nonsynonymous SNV	"Atg7:NM_001379130:exon10:c.G967A:p.G323S,Atg7:NM_028835:exon10:c.G919A:p.G307S,Atg7:NM_001253717:exon11:c.G1048A:p.G350S,Atg7:NM_001253718:exon11:c.G919A:p.G307S"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.795307427	2	0.5826993	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	222	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.537369883	2	0.9999507	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	115574567	12A2p6	cell line	sgMsh2	115574567	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	198	0	0	NA	exonic	Tsen2	synonymous SNV	Tsen2:NM_199033:exon9:c.G1089A:p.L363L	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.881286609	1	0.9949636	TGT	synonymous	NA	NA	NA	NA
M5_p20	chr6	116224517	12A2p6	cell line	sgMsh2	116224517	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	253	0	0	NA	exonic	Washc2	frameshift deletion	Washc2:NM_026585:exon12:c.1073delT:p.F359Lfs*22	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.881286609	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	70	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.717926164	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M5_p20	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	359	0	0	NA	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	1	0.9263675	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	102	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.520174047	NA	NA	CGT	frameshift	NA	NA	NA	-1
M5_p20	chr6	118652031	12A2p6	cell line	sgMsh2	118652031	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	169	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon25:c.A2968C:p.I990L,Cacna1c:NM_001159533:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001159534:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001159535:exon29:c.A3745C:p.I1249L,Cacna1c:NM_001255997:exon29:c.A3835C:p.I1279L,Cacna1c:NM_001255999:exon29:c.A3835C:p.I1279L,Cacna1c:NM_009781:exon29:c.A3835C:p.I1279L,Cacna1c:NM_001255998:exon30:c.A3910C:p.I1304L,Cacna1c:NM_001256000:exon30:c.A3820C:p.I1274L,Cacna1c:NM_001256001:exon30:c.A3829C:p.I1277L,Cacna1c:NM_001256002:exon30:c.A3820C:p.I1274L"	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.55456572	2	0.9999163	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	120	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.752317837	2	0.6897578	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M5_p20	chr6	119594810	12A2p6	cell line	sgMsh2	119594810	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	93	0	0	NA	exonic	Erc1	nonsynonymous SNV	Erc1:NM_053204:exon20:c.A3200C:p.E1067A	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.91997724	1	0.9864625	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	120209371	12A2p6	cell line	sgMsh2	120209371	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	138	0	0	NA	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon16:c.G2360A:p.R787H	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.606153228	2	0.9991431	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	68	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.932874117	1	0.977519	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.25	16	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.09277045	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M5_p20	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.1854	178	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.797027011	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M5_p20	chr6	121649887	12A2p6	cell line	sgMsh2	121649887	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	128	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon14:c.T1697G:p.I566S	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.50727717	2	0.9871353	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	122320320	12A2p6	cell line	sgMsh2	122320320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	122	0	0	NA	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon11:c.T2234C:p.L745S,Phc1:NM_001271579:exon12:c.T2390C:p.L797S,Phc1:NM_007905:exon12:c.T2390C:p.L797S,Phc1:NM_001355215:exon13:c.T2438C:p.L813S"	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	1	0.8568789	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	217	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.980162667	1	0.9999937	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr6	122559582	12A2p6	cell line	sgMsh2	122559582	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	48	0	0	NA	exonic	Aicda	synonymous SNV	Aicda:NM_009645:exon2:c.C120T:p.T40T	6qF1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	1	1	0.9824588	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	123336474	12A2p6	cell line	sgMsh2	123336474	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.147	422	0	0	NA	exonic	Vmn2r19	synonymous SNV	Vmn2r19:NM_001104632:exon6:c.T2502A:p.L834L	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.631946983	2	1.56E-09	TTC	synonymous	NA	NA	NA	NA
M5_p20	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	595	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.69213241	2	2.91E-09	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	847	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.833998059	1	0.9979859	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	123786737	12A2p6	cell line	sgMsh2	123786737	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	560	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon3:c.C572T:p.P191L	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.799606386	2	0.7486217	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	903	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.816802223	1	0.875507	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	123828441	12A2p6	cell line	sgMsh2	123828441	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	510	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon4:c.C1456T:p.H486Y	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.348215684	3	1.00E-09	TGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	124191963	12A2p6	cell line	sgMsh2	124191963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	810	0	0	NA	exonic	Vmn2r27	nonsynonymous SNV	Vmn2r27:NM_001104642:exon6:c.A2207G:p.E736G	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.795307427	2	0.9620233	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	93	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.472885497	2	0.8677881	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Vardict	2	0.192	84	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.825400141	NA	NA	CGG	frameshift	NA	NA	NA	-1
M5_p20	chr6	124910892	12A2p6	cell line	sgMsh2	124910892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	48	0	0	NA	exonic	Lag3	synonymous SNV	Lag3:NM_008479:exon2:c.G78A:p.G26G	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.950069954	1	0.9651019	TCC	synonymous	NA	NA	NA	NA
M5_p20	chr6	124914408	12A2p6	cell line	sgMsh2	124914408	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.11	49	0	0	NA	exonic	Ptms	synonymous SNV	Ptms:NM_026988:exon4:c.G255A:p.E85E	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.472885497	2	0.8339385	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	125139695	12A2p6	cell line	sgMsh2	125139695	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	621	0	0	NA	exonic	Nop2	nonsynonymous SNV	Nop2:NM_138747:exon10:c.G989A:p.G330E	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.270834421	3	1	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	186	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.735122	2	0.9504645	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	146	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.584658433	2	0.9997732	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M5_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	355	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.541668842	2	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	126039487	12A2p6	cell line	sgMsh2	126039487	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	84	0	0	NA	exonic	Ano2	synonymous SNV	"Ano2:NM_001364563:exon24:c.C2784A:p.S928S,Ano2:NM_001364562:exon25:c.C2970A:p.S990S,Ano2:NM_153589:exon26:c.C2982A:p.S994S"	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.567462597	2	0.9889612	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	200	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.687833451	2	0.9976882	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	126880234	12A2p6	cell line	sgMsh2	126880234	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	195	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon13:c.G1481A:p.R494K	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.515875088	2	0.9987148	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	242	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.343916725	3	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	127732773	12A2p6	cell line	sgMsh2	127732773	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	134	0	0	NA	exonic	Prmt8	nonsynonymous SNV	Prmt8:NM_201371:exon2:c.G123T:p.K41N	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.670637614	2	0.986336	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	78	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.971564749	1	0.9933652	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	72	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.717926164	2	7.82E-06	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	319	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.700730328	2	0.9999089	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr6	131285713	12A2p6	cell line	sgMsh2	131285713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	190	0	0	NA	exonic	Magohb	nonsynonymous SNV	"Magohb:NM_025564:exon4:c.G277A:p.V93I,Magohb:NM_001327860:exon5:c.G139A:p.V47I"	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.846894936	1	0.9610302	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	131678276	12A2p6	cell line	sgMsh2	131678276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	125	0	0	NA	exonic	Tas2r106	nonsynonymous SNV	Tas2r106:NM_207016:exon1:c.A611G:p.N204S	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.726524082	2	0.8629845	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	131689760	12A2p6	cell line	sgMsh2	131689760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	293	0	0	NA	exonic	Tas2r114	nonsynonymous SNV	Tas2r114:NM_207019:exon1:c.A304G:p.S102G	6qF3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.696431369	2	0.9998495	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	162	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.558864679	2	0.9999092	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr6	132600518	12A2p6	cell line	sgMsh2	132600518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	33	0	0	NA	exonic	Prp2	nonsynonymous SNV	Prp2:NM_031499:exon2:c.C767A:p.P256H	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.924276199	1	0.9221171	CCC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr6	132711489	12A2p6	cell line	sgMsh2	132711489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	192	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.T440C:p.F147S	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.855492854	1	0.9761127	AAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr6	132737416	12A2p6	cell line	sgMsh2	132737416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	228	0	0	NA	exonic	Tas2r115	nonsynonymous SNV	Tas2r115:NM_207020:exon1:c.G571A:p.G191S	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.494380293	2	0.9923245	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	132803231	12A2p6	cell line	sgMsh2	132803231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	202	0	0	NA	exonic	Tas2r117	nonsynonymous SNV	Tas2r117:NM_207021:exon1:c.A331G:p.T111A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	2	0.823399	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	285	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	1	4.44E-08	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr6	132868495	12A2p6	cell line	sgMsh2	132868495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	337	0	0	NA	exonic	Tas2r110	nonsynonymous SNV	Tas2r110:NM_199155:exon1:c.T488C:p.V163A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.257937544	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	76	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	2	0.5454748	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	117	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.743719919	2	0.7388571	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	109	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.808204305	1	0.7679843	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	204	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.662039696	2	0.9995764	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	231	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.898482445	1	0.9991773	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	144	0	0	NA	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.765214714	2	0.6667249	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	135083751	12A2p6	cell line	sgMsh2	135083751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	223	0	0	NA	exonic	Gprc5a	nonsynonymous SNV	Gprc5a:NM_181444:exon4:c.A989G:p.H330R	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.619050106	2	0.9999893	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	192	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.795307427	1	0.576308	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	136329362	12A2p6	cell line	sgMsh2	136329362	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.15	157	0	0	NA	exonic	Eif4a3l1	nonsynonymous SNV	Eif4a3l1:NM_001142734:exon2:c.A820G:p.T274A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.64484386	2	0.9984183	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	136737382	12A2p6	cell line	sgMsh2	136737382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	366	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon12:c.A1445G:p.N482S,Gucy2c:NM_145067:exon12:c.A1445G:p.N482S"	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.915678281	1	0.9999954	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.138	226	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.593256351	2	0.9999983	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M5_p20	chr6	137780817	12A2p6	cell line	sgMsh2	137780817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	90	0	0	NA	exonic	Dera	nonsynonymous SNV	Dera:NM_172733:exon4:c.T365C:p.V122A	6qG1	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.885585568	1	0.9638865	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	135	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.382607357	3	0.989826	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	142	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.941472036	1	0.9987774	AAA	synonymous	NA	NA	NA	NA
M5_p20	chr6	141812709	12A2p6	cell line	sgMsh2	141812709	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	337	0	0	NA	exonic	Slco1a4	synonymous SNV	"Slco1a4:NM_001355577:exon13:c.G1575A:p.S525S,Slco1a4:NM_030687:exon14:c.G1575A:p.S525S"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.799606386	2	0.5240532	GCG	synonymous	NA	NA	NA	NA
M5_p20	chr6	141815578	12A2p6	cell line	sgMsh2	141815578	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	429	0	0	NA	exonic	Slco1a4	synonymous SNV	"Slco1a4:NM_001355577:exon12:c.T1308A:p.L436L,Slco1a4:NM_030687:exon13:c.T1308A:p.L436L"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.399803193	3	0.9999993	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr6	141987693	12A2p6	cell line	sgMsh2	141987693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	387	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon9:c.T1365C:p.T455T	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.679235533	2	0.9999992	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	447	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.816802223	1	0.8424066	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	362	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.816802223	1	0.835499	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.911379322	1	0.9930609	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	368	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.786709509	2	0.8364568	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	142767811	12A2p6	cell line	sgMsh2	142767811	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	213	0	0	NA	exonic	Cmas	nonsynonymous SNV	Cmas:NM_009908:exon4:c.A561C:p.E187D	6qG2	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.55456572	2	0.9999901	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.409	340	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M5_p20	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	126	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.902781404	1	0.990743	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	146550736	12A2p6	cell line	sgMsh2	146550736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	58	0	0	NA	exonic	Ints13	nonsynonymous SNV	"Ints13:NM_001362107:exon16:c.A1996G:p.N666D,Ints13:NM_001362108:exon16:c.A1984G:p.N662D,Ints13:NM_138757:exon16:c.A1984G:p.N662D,Ints13:NM_001362106:exon17:c.A2008G:p.N670D"	6qG3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.838297018	1	0.8592812	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	146592735	12A2p6	cell line	sgMsh2	146592735	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	384	0	0	NA	exonic	Fgfr1op2	nonsynonymous SNV	Fgfr1op2:NM_026218:exon5:c.G498T:p.E166D	6qG3	chr6-3373003-148425959	5	4	1	0.97	4.169990295	NA	1	0.778111591	2	0.9391417	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1802	394	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M5_p20	chr6	148933108	12A2p6	cell line	sgMsh2	148933108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	153	0	0	NA	exonic	Sinhcaf	nonsynonymous SNV	"Sinhcaf:NM_001355645:exon2:c.A22G:p.K8E,Sinhcaf:NM_019643:exon2:c.A22G:p.K8E"	6qG3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	202	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	193	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9995151	CGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	32	0	0	NA	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	8.19E-05	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	139	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9944366	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	553	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	227	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Vardict	2	0.2	14	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.8296339	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M5_p20	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	80	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	21	0	0	NA	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	2	1	1	0.9277295	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	65	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9307566	CGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	293	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.881286609	1	0.9992134	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	176	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	505	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	22	0	0	NA	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9313098	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	399	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	2.47E-09	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	122	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996847	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	181	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9985816	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	166	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999714	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	6996630	12A2p6	cell line	sgMsh2	6996630	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	225	0	0	NA	exonic	Aurkc	nonsynonymous SNV	"Aurkc:NM_001080965:exon3:c.G252T:p.K84N,Aurkc:NM_001080966:exon3:c.G135T:p.K45N,Aurkc:NM_020572:exon3:c.G135T:p.K45N"	7qA1	chr7-3489139-7297085	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999989	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	9025227	12A2p6	cell line	sgMsh2	9025227	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	473	0	0	NA	exonic	Vmn2r39	nonsynonymous SNV	"Vmn2r39:NM_001105071:exon3:c.C1144A:p.L382I,Vmn2r39:NM_001385077:exon3:c.C1096A:p.L366I"	7qA1	chr7-7312117-10048638	6.45044659	4.45044659	2	0.97	4.169990295	NA	2	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	9986490	12A2p6	cell line	sgMsh2	9986490	A	G	SNV	Mutect2;Vardict	2	0.058	857	0	0	NA	exonic	Vmn2r49	nonsynonymous SNV	Vmn2r49:NM_001105156:exon3:c.T1073C:p.I358T	7qA1	chr7-7312117-10048638	6.45044659	4.45044659	2	0.97	4.169990295	NA	1	0.249339626	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	10037304	12A2p6	cell line	sgMsh2	10037304	T	G	SNV	Mutect2;Vardict	2	0.065	388	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.A2517C:p.E839D	7qA1	chr7-7312117-10048638	6.45044659	4.45044659	2	0.97	4.169990295	NA	1	0.279432339	3	1	TTT	nonsynonymous	TTTC	9	TTTCTTTCT	NA
M5_p20	chr7	10446891	12A2p6	cell line	sgMsh2	10446891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	138	0	0	NA	exonic	Vmn1r67	synonymous SNV	Vmn1r67:NM_134229:exon1:c.T81C:p.L27L	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998683	TTA	synonymous	NA	NA	NA	NA
M5_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	171	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.998777	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	10715340	12A2p6	cell line	sgMsh2	10715340	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	44	0	0	NA	exonic	Nlrp4b	frameshift deletion	"Nlrp4b:NM_001355151:exon4:c.1469delT:p.L492Wfs*28,Nlrp4b:NM_172481:exon4:c.1469delT:p.L492Wfs*28"	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	218	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9999921	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M5_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	106	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	105	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992036	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	14664508	12A2p6	cell line	sgMsh2	14664508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	206	0	0	NA	exonic	Obox7	nonsynonymous SNV	Obox7:NM_001038676:exon3:c.T346C:p.C116R	7qA1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9995862	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	16434943	12A2p6	cell line	sgMsh2	16434943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	43	0	0	NA	exonic	Zc3h4	synonymous SNV	Zc3h4:NM_198631:exon14:c.A3201G:p.P1067P	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.649142819	2	0.6645955	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	224	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999988	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	37	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9684922	TGA	synonymous	NA	NA	NA	NA
M5_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	438	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.01E-09	ACA	synonymous	NA	NA	NA	NA
M5_p20	chr7	18066078	12A2p6	cell line	sgMsh2	18066078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	90	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon1:c.A18T:p.A6A,Ceacam12:NM_001162524:exon1:c.A18T:p.A6A,Ceacam12:NM_026087:exon1:c.A18T:p.A6A"	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.705029287	2	0.8176613	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	18067240	12A2p6	cell line	sgMsh2	18067240	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	226	0	0	NA	exonic	Ceacam12	nonsynonymous SNV	"Ceacam12:NM_001162523:exon2:c.G143A:p.G48E,Ceacam12:NM_001162524:exon2:c.G143A:p.G48E,Ceacam12:NM_026087:exon2:c.G143A:p.G48E"	7qA2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.833998059	1	0.9362925	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.061	476	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.262236503	3	1	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	91	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9982924	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	19278332	12A2p6	cell line	sgMsh2	19278332	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	33	0	0	NA	exonic	Ppm1n	nonsynonymous SNV	Ppm1n:NM_177691:exon2:c.C974A:p.P325H	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9611086	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9999596	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	19701789	12A2p6	cell line	sgMsh2	19701789	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	64	0	0	NA	exonic	Tomm40	nonsynonymous SNV	"Tomm40:NM_001109748:exon9:c.C1015A:p.L339M,Tomm40:NM_016871:exon10:c.C1015A:p.L339M"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	0.9901013	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	20811432	12A2p6	cell line	sgMsh2	20811432	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	176	0	0	NA	exonic	Vmn1r114	nonsynonymous SNV	Vmn1r114:NM_001166837:exon1:c.T755G:p.L252R	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.21	201	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9986643	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	23984622	12A2p6	cell line	sgMsh2	23984622	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	547	0	0	NA	exonic	Vmn1r181	nonsynonymous SNV	Vmn1r181:NM_207546:exon1:c.A511C:p.S171R	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	24515483	12A2p6	cell line	sgMsh2	24515483	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	56	0	0	NA	exonic	Zfp428	nonsynonymous SNV	"Zfp428:NM_001290461:exon3:c.G523T:p.G175W,Zfp428:NM_146183:exon3:c.G484T:p.G162W,Zfp428:NM_175142:exon3:c.G523T:p.G175W"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.9842456	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	106	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	CGC	synonymous	C	5	CCCCC	NA
M5_p20	chr7	25203553	12A2p6	cell line	sgMsh2	25203553	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.19	31	0	0	NA	exonic	Dedd2	nonsynonymous SNV	Dedd2:NM_207677:exon5:c.C980T:p.T327I	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.816802223	1	0.8061881	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	38	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9701148	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	81	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9608021	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	25346220	12A2p6	cell line	sgMsh2	25346220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	65	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon24:c.T4265C:p.V1422A	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.653441778	2	0.8427219	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	35	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.932428	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9427584	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M5_p20	chr7	26384922	12A2p6	cell line	sgMsh2	26384922	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	453	0	0	NA	exonic	Nlrp9c	nonsynonymous SNV	Nlrp9c:NM_001042612:exon3:c.C1231A:p.L411I	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	306	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.48E-08	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	26558562	12A2p6	cell line	sgMsh2	26558562	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	199	0	0	NA	exonic	Nlrp9a	nonsynonymous SNV	"Nlrp9a:NM_001302792:exon2:c.T1337C:p.V446A,Nlrp9a:NM_001048219:exon3:c.T1604C:p.V535A,Nlrp9a:NM_001048220:exon3:c.T1604C:p.V535A"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999953	GTG	nonsynonymous	TGG	8	TGGTGGTG	NA
M5_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	218	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999983	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.8847794	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M5_p20	chr7	27581432	12A2p6	cell line	sgMsh2	27581432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	50	0	0	NA	exonic	2310022A10Rik	nonsynonymous SNV	"2310022A10Rik:NM_001122767:exon9:c.C1100T:p.T367I,2310022A10Rik:NM_001374792:exon11:c.C1178T:p.T393I"	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9842431	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	121	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.687833451	2	0.9575024	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	28395855	12A2p6	cell line	sgMsh2	28395855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	169	0	0	NA	exonic	Paf1	synonymous SNV	Paf1:NM_019458:exon6:c.T444C:p.N148N	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999757	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	155	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9990838	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	195	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999941	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	32	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9590175	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M5_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	22	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9313098	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	28	0	0	NA	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9495278	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	30360056	12A2p6	cell line	sgMsh2	30360056	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	42	0	0	NA	exonic	Lrfn3	frameshift deletion	Lrfn3:NM_175478:exon2:c.743delG:p.G248Efs*50	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M5_p20	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	123	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997015	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	30574236	12A2p6	cell line	sgMsh2	30574236	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.207	46	0	0	NA	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon29:c.T6982C:p.F2328L,Kmt2b:NM_029274:exon29:c.T6955C:p.F2319L"	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9187069	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	72	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.846894936	1	9.82E-09	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	228	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9997206	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Vardict	2	0.183	222	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.786709509	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	101	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990096	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.979122	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	36	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9667845	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	131	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9990503	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M5_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	206	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999968	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995859	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	732	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	1.09E-09	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9821865	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	104	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999159	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	43953899	12A2p6	cell line	sgMsh2	43953899	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	131	0	0	NA	exonic	Klk1b8	synonymous SNV	Klk1b8:NM_008457:exon3:c.C255A:p.P85P	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	69	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9943529	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	104	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999159	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	29	0	0	NA	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9520794	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	181	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999874	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	44981747	12A2p6	cell line	sgMsh2	44981747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	94	0	0	NA	exonic	Prmt1	nonsynonymous SNV	"Prmt1:NM_001252476:exon3:c.G285T:p.K95N,Prmt1:NM_001252477:exon3:c.G285T:p.K95N,Prmt1:NM_019830:exon4:c.G339T:p.K113N"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.9927147	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	19	0	0	NA	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9200387	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	45122859	12A2p6	cell line	sgMsh2	45122859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	142	0	0	NA	exonic	Rps11	nonsynonymous SNV	Rps11:NM_013725:exon4:c.A323G:p.N108S	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.563163638	2	0.9997552	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	64	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9925954	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	131	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	139	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.799606386	1	0.6872201	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	56	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9885908	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	126	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9986238	CCT	synonymous	CTG	8	CTGCTGCT	NA
M5_p20	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	113	0	0	NA	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999485	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.288	106	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.288	106	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	22	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9313098	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	216	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999981	GTG	synonymous	GT	8	GTGTGTGT	NA
M5_p20	chr7	50599854	12A2p6	cell line	sgMsh2	50599854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	268	0	0	NA	exonic	4933405O20Rik	nonsynonymous SNV	4933405O20Rik:NM_172901:exon1:c.A635G:p.K212R	7qB4	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr7	55874909	12A2p6	cell line	sgMsh2	55874909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	114	0	0	NA	exonic	Cyfip1	synonymous SNV	"Cyfip1:NM_001164662:exon6:c.A390G:p.R130R,Cyfip1:NM_011370:exon6:c.A390G:p.R130R,Cyfip1:NM_001164661:exon7:c.A390G:p.R130R"	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.696431369	2	0.9285517	GAA	synonymous	NA	NA	NA	NA
M5_p20	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	154	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9933661	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	56197112	12A2p6	cell line	sgMsh2	56197112	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	160	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon70:c.C10809A:p.D3603E,Herc2:NM_010418:exon70:c.C10809A:p.D3603E"	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999603	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	154	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9919498	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	270	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999927	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	101	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.786709509	1	0.6394904	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	62349187	12A2p6	cell line	sgMsh2	62349187	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	106	0	0	NA	exonic	Ndn	synonymous SNV	Ndn:NM_010882:exon1:c.C780A:p.P260P	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	CCG	synonymous	NA	NA	NA	NA
M5_p20	chr7	62419521	12A2p6	cell line	sgMsh2	62419521	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	55	0	0	NA	exonic	Mkrn3	nonsynonymous SNV	Mkrn3:NM_011746:exon1:c.G521T:p.R174M	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9879589	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	62419940	12A2p6	cell line	sgMsh2	62419940	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	20	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.102delT:p.F34Lfs*25	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M5_p20	chr7	64247520	12A2p6	cell line	sgMsh2	64247520	-	A	Insertion	Mutect2;Vardict	2	0.174	57	0	0	NA	exonic	Trpm1	frameshift insertion	Trpm1:NM_001039104:exon25:c.3522dupA:p.R1177Efs*16	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.748018878	NA	NA	AGA	frameshift	A	5	AAAAA	1
M5_p20	chr7	64775706	12A2p6	cell line	sgMsh2	64775706	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	36	0	0	NA	exonic	Fam189a1	frameshift deletion	Fam189a1:NM_183087:exon7:c.925delC:p.Q309Rfs*52	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.984461626	NA	NA	TGG	frameshift	CTGG	9	CTGGCTGGC	-1
M5_p20	chr7	66060654	12A2p6	cell line	sgMsh2	66060654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	52	0	0	NA	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon1:c.A44G:p.Y15C	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9858485	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	465	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9994862	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	67726092	12A2p6	cell line	sgMsh2	67726092	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.236	60	0	0	NA	exonic	Ttc23	frameshift insertion	"Ttc23:NM_001168476:exon10:c.785dupC:p.Q264Pfs*33,Ttc23:NM_001168475:exon11:c.1292dupC:p.Q433Pfs*33,Ttc23:NM_001360653:exon12:c.1292dupC:p.Q433Pfs*33,Ttc23:NM_025905:exon12:c.1418dupC:p.Q475Pfs*33"	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TGC	frameshift	C	5	CCCCC	1
M5_p20	chr7	67735847	12A2p6	cell line	sgMsh2	67735847	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	210	0	0	NA	exonic	Synm	nonsynonymous SNV	"Synm:NM_201639:exon4:c.T2066G:p.V689G,Synm:NM_207663:exon4:c.T2066G:p.V689G"	7qC	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999974	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	73507892	12A2p6	cell line	sgMsh2	73507892	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	82	0	0	NA	exonic	Chd2	synonymous SNV	Chd2:NM_001081345:exon6:c.C465A:p.P155P	7qD1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9924756	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	173	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999805	CAG	synonymous	AGA	8	AGAAGAAG	NA
M5_p20	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	132	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.791008468	1	0.6187401	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.294	26	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9440333	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	51	0	0	NA	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.696431369	2	0.5912355	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	165	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999698	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.773812632	1	6.21E-09	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	239	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	63	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9857471	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	224	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9959774	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	81596135	12A2p6	cell line	sgMsh2	81596137	GAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	78	0	0	NA	exonic	Whamm	nonframeshift deletion	Whamm:NM_001004185:exon10:c.2338_2340del:p.E781del	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AGA	inframe	GAG	8	GAGGAGGA	-3
M5_p20	chr7	81614471	12A2p6	cell line	sgMsh2	81614471	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	63	0	0	NA	exonic	Homer2	stopgain	"Homer2:NM_001164086:exon6:c.G523T:p.E175X,Homer2:NM_001164087:exon6:c.G364T:p.E122X,Homer2:NM_011983:exon6:c.G556T:p.E186X"	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.791008468	1	9.23E-07	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	81968991	12A2p6	cell line	sgMsh2	81968991	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	87	0	0	NA	exonic	Bnc1	synonymous SNV	Bnc1:NM_007562:exon5:c.G2325A:p.L775L	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	TCA	synonymous	TTCA	8	TTCATTCA	NA
M5_p20	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.316	90	0	0	NA	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	GCA	synonymous	NA	NA	NA	NA
M5_p20	chr7	84916076	12A2p6	cell line	sgMsh2	84916076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	535	0	0	NA	exonic	Olfr290	nonsynonymous SNV	Olfr290:NM_146416:exon1:c.T296C:p.L99S	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.872688691	1	0.9999734	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	85005753	12A2p6	cell line	sgMsh2	85005753	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	156	0	0	NA	exonic	Vmn2r66	synonymous SNV	Vmn2r66:NM_001033878:exon4:c.C1347T:p.N449N	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9996706	GGT	synonymous	NA	NA	NA	NA
M5_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	244	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9994028	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	85619258	12A2p6	cell line	sgMsh2	85619258	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	371	0	0	NA	exonic	Vmn2r71	nonsynonymous SNV	Vmn2r71:NM_001384948:exon3:c.C656A:p.S219Y	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.894183486	1	0.9999583	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	572	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	1.00E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M5_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	143	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9998997	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	86268808	12A2p6	cell line	sgMsh2	86268808	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	41	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.A980C:p.K327T	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.571761556	2	0.8085175	TTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr7	86269100	12A2p6	cell line	sgMsh2	86269100	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	317	0	0	NA	exonic	Olfr310	stopgain	Olfr310:NM_001011520:exon1:c.G688T:p.G230X	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.717926164	2	0.9995152	CCT	nonsynonymous	CT	9	CTCTCTCTC	NA
M5_p20	chr7	86363538	12A2p6	cell line	sgMsh2	86363538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	304	0	0	NA	exonic	Olfr305	synonymous SNV	Olfr305:NM_146616:exon1:c.A798G:p.S266S	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.64E-08	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	86386263	12A2p6	cell line	sgMsh2	86386263	T	G	SNV	Mutect2;Strelka2	2	0.039	238	0	0	NA	exonic	Olfr304	synonymous SNV	Olfr304:NM_001011828:exon1:c.A396C:p.A132A	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.167659404	3	1	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	86413077	12A2p6	cell line	sgMsh2	86413077	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	329	0	0	NA	exonic	Olfr301	synonymous SNV	Olfr301:NM_212436:exon3:c.C714A:p.T238T	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	4.94E-09	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	86466004	12A2p6	cell line	sgMsh2	86466004	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	370	0	0	NA	exonic	Olfr299	nonsynonymous SNV	Olfr299:NM_001011767:exon1:c.C592A:p.L198I	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.42E-09	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	368	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.47E-09	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.445	193	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M5_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	415	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.04E-09	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	86811375	12A2p6	cell line	sgMsh2	86811375	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	448	0	0	NA	exonic	Vmn2r77	synonymous SNV	Vmn2r77:NM_001105188:exon6:c.C1908A:p.S636S	7qD3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9993564	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	213	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999978	TAA	synonymous	A	5	AAAAA	NA
M5_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	208	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999971	ATT	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr7	96823811	12A2p6	cell line	sgMsh2	96823811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	82	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon18:c.A2813G:p.D938G,Tenm4:NM_011858:exon18:c.A2702G:p.D901G,Tenm4:NM_001310762:exon19:c.A2810G:p.D937G"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9944779	GAC	nonsynonymous	C	5	CCCCC	NA
M5_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	180	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999867	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	97	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	156	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.9998772	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	98097619	12A2p6	cell line	sgMsh2	98097619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	111	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon5:c.C553A:p.L185M,Myo7a:NM_001256081:exon6:c.C586A:p.L196M,Myo7a:NM_001256082:exon6:c.C571A:p.L191M,Myo7a:NM_008663:exon6:c.C586A:p.L196M"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994257	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9961382	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	81	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9228283	CAG	synonymous	CAG	8	CAGCAGCA	NA
M5_p20	chr7	100499325	12A2p6	cell line	sgMsh2	100499325	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	147	0	0	NA	exonic	Ucp2	nonsynonymous SNV	Ucp2:NM_011671:exon8:c.A905G:p.Y302C	7qE2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9996675	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	66	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	101384922	12A2p6	cell line	sgMsh2	101384922	T	C	SNV	Mutect2;Vardict	2	0.176	22	0	0	NA	exonic	Arap1	synonymous SNV	Arap1:NM_001040111:exon4:c.T570C:p.P190P	7qE2	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.756616796	1	0.7358359	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	102421529	12A2p6	cell line	sgMsh2	102421529	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	25	0	0	NA	exonic	Stim1	nonsynonymous SNV	"Stim1:NM_001374058:exon7:c.A968G:p.Q323R,Stim1:NM_001374060:exon7:c.A968G:p.Q323R,Stim1:NM_009287:exon7:c.A968G:p.Q323R"	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	2	1	1	0.9410786	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	174	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.9444628	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	144	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.999905	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	173	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999777	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	155	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	102887211	12A2p6	cell line	sgMsh2	102887211	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	75	0	0	NA	exonic	Olfr569	frameshift deletion	Olfr569:NM_147088:exon1:c.941delC:p.P314Lfs*1	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M5_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	228	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8621326	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	103212324	12A2p6	cell line	sgMsh2	103212324	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	402	0	0	NA	exonic	Olfr593	nonsynonymous SNV	Olfr593:NM_146380:exon1:c.G463A:p.G155R	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.07E-09	TGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	496	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	171	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999782	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	208	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999971	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr7	103506578	12A2p6	cell line	sgMsh2	103506578	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	129	0	0	NA	exonic	Olfr610	nonsynonymous SNV	Olfr610:NM_147081:exon1:c.G367A:p.D123N	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9993665	TCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	104003305	12A2p6	cell line	sgMsh2	104003305	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	695	0	0	NA	exonic	Olfr638	nonsynonymous SNV	Olfr638:NM_147120:exon1:c.G47A:p.G16D	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	1	1	1	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	104084516	12A2p6	cell line	sgMsh2	104084516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	198	0	0	NA	exonic	Olfr645	nonsynonymous SNV	Olfr645:NM_207144:exon1:c.T563A:p.I188N	7qE3	chr7-10049773-104249043	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9969431	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	260	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.833998059	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9981716	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	104596319	12A2p6	cell line	sgMsh2	104596319	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	297	0	0	NA	exonic	Olfr655	synonymous SNV	Olfr655:NM_146820:exon1:c.C861T:p.N287N	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.159061485	3	1	GGT	synonymous	NA	NA	NA	NA
M5_p20	chr7	104617935	12A2p6	cell line	sgMsh2	104617935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	248	0	0	NA	exonic	Olfr656	synonymous SNV	Olfr656:NM_147075:exon1:c.T279C:p.A93A	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	383	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9999996	TCC	synonymous	NA	NA	NA	NA
M5_p20	chr7	104840580	12A2p6	cell line	sgMsh2	104840580	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	275	0	0	NA	exonic	Usp17lb	frameshift deletion	"Usp17lb:NM_001358922:exon2:c.1136delA:p.K379Sfs*27,Usp17lb:NM_201409:exon2:c.1139delA:p.K380Sfs*27"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.937173077	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M5_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	575	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	1.51E-09	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	105384980	12A2p6	cell line	sgMsh2	105384980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	96	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon8:c.T1443G:p.P481P,Fam160a2:NM_001242365:exon8:c.T1443G:p.P481P"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9986994	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	105389552	12A2p6	cell line	sgMsh2	105389552	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.098	74	0	0	NA	exonic	Fam160a2	nonsynonymous SNV	"Fam160a2:NM_001242364:exon3:c.A479C:p.D160A,Fam160a2:NM_001242365:exon3:c.A479C:p.D160A,Fam160a2:NM_199009:exon3:c.A479C:p.D160A,Fam160a2:NM_001242363:exon4:c.A479C:p.D160A"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.421297989	3	0.5547134	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	118	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr7	105434067	12A2p6	cell line	sgMsh2	105434067	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	39	0	0	NA	exonic	Cckbr	nonsynonymous SNV	Cckbr:NM_007627:exon3:c.C476T:p.P159L	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9678768	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	144	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.907080363	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	272	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9999991	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	243	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999996	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	107074643	12A2p6	cell line	sgMsh2	107074643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	287	0	0	NA	exonic	Olfr714	nonsynonymous SNV	Olfr714:NM_147033:exon1:c.A814G:p.K272E	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	3.99E-08	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	214	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999979	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	107822833	12A2p6	cell line	sgMsh2	107822833	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	583	0	0	NA	exonic	Olfr469	nonsynonymous SNV	Olfr469:NM_146426:exon1:c.T635G:p.V212G	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	655	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	1.16E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M5_p20	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	568	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	AAA	synonymous	AATG	8	AATGAATG	NA
M5_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	272	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	ATG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	142	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998941	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	330	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9997489	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108212306	12A2p6	cell line	sgMsh2	108212306	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	355	0	0	NA	exonic	Olfr487	nonsynonymous SNV	Olfr487:NM_001011811:exon1:c.G222T:p.M74I	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	1.95E-09	CCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108317514	12A2p6	cell line	sgMsh2	108317514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	575	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.A619G:p.I207V	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.468586538	2	0.8528925	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	596	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.984461626	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.234	405	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	1.06E-09	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	108845947	12A2p6	cell line	sgMsh2	108845947	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	215	0	0	NA	exonic	Olfr516	nonsynonymous SNV	Olfr516:NM_146725:exon1:c.C62A:p.P21H	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.999998	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	109525720	12A2p6	cell line	sgMsh2	109525720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	96	0	0	NA	exonic	Denn2b	synonymous SNV	"Denn2b:NM_029811:exon17:c.T1851G:p.T617T,Denn2b:NM_001001326:exon18:c.T3102G:p.T1034T"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986994	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	110887956	12A2p6	cell line	sgMsh2	110887956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	100	0	0	NA	exonic	Mrvi1	synonymous SNV	"Mrvi1:NM_010826:exon16:c.T2184C:p.P728P,Mrvi1:NM_194464:exon17:c.T1989C:p.P663P"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9989541	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	83	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9973606	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	111055527	12A2p6	cell line	sgMsh2	111055527	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	41	0	0	NA	exonic	Ctr9	synonymous SNV	Ctr9:NM_009431:exon25:c.G3264A:p.P1088P	7qE3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9737067	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	127	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	420	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	8.77E-09	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	180	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.993059544	1	0.9999807	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	116526080	12A2p6	cell line	sgMsh2	116526080	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	261	0	0	NA	exonic	Nucb2	synonymous SNV	"Nucb2:NM_001130479:exon5:c.C372A:p.A124A,Nucb2:NM_001360375:exon6:c.C372A:p.A124A"	7qF1	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.833998059	1	0.9471449	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr7	119489394	12A2p6	cell line	sgMsh2	119489394	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	222	0	0	NA	exonic	Pdilt	synonymous SNV	Pdilt:NM_027943:exon10:c.G1383A:p.R461R	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999987	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	217	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999982	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	275	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	121737955	12A2p6	cell line	sgMsh2	121737955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	68	0	0	NA	exonic	Scnn1g	nonsynonymous SNV	Scnn1g:NM_011326:exon2:c.A38G:p.K13R	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9940382	AAG	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr7	122159773	12A2p6	cell line	sgMsh2	122159773	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	0	0	NA	exonic	Plk1	nonsynonymous SNV	Plk1:NM_011121:exon1:c.G231T:p.E77D	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.979122	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	28	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9495278	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	124397168	12A2p6	cell line	sgMsh2	124397168	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	exonic	Hs3st4	synonymous SNV	Hs3st4:NM_001252072:exon2:c.A1056T:p.R352R	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993237	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	125663440	12A2p6	cell line	sgMsh2	125663440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	179	0	0	NA	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon20:c.A3246G:p.L1082L	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999859	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	147	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999194	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	126413811	12A2p6	cell line	sgMsh2	126413811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	108	0	0	NA	exonic	Cd19	nonsynonymous SNV	"Cd19:NM_001357091:exon3:c.A530G:p.N177S,Cd19:NM_009844:exon3:c.A530G:p.N177S"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993237	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	126496639	12A2p6	cell line	sgMsh2	126496639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	16	0	0	NA	exonic	Atxn2l	synonymous SNV	"Atxn2l:NM_001347658:exon11:c.T1065C:p.P355P,Atxn2l:NM_183020:exon11:c.T1323C:p.P441P"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.09277045	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	44	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9782749	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	127586366	12A2p6	cell line	sgMsh2	127586366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	41	0	0	NA	exonic	Ccdc189	synonymous SNV	"Ccdc189:NM_001033040:exon4:c.C390T:p.H130H,Ccdc189:NM_001382406:exon4:c.C390T:p.H130H,Ccdc189:NM_001382407:exon4:c.C390T:p.H130H"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.974511	CGT	synonymous	NA	NA	NA	NA
M5_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9912904	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	41	0	0	NA	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.974511	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr7	127879282	12A2p6	cell line	sgMsh2	127879282	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	112	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A630G:p.V210V	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994562	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	42	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9758313	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	268	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9981997	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	82	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.737787	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	59	0	0	NA	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9902963	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	126	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9891596	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	143	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998997	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	194	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999938	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	133722249	12A2p6	cell line	sgMsh2	133722249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	169	0	0	NA	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon10:c.T1567C:p.Y523H,Dhx32:NM_001286030:exon11:c.T1987C:p.Y663H,Dhx32:NM_001286031:exon11:c.T1987C:p.Y663H,Dhx32:NM_001357685:exon11:c.T1942C:p.Y648H,Dhx32:NM_133941:exon11:c.T1987C:p.Y663H"	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9999193	TAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	134765304	12A2p6	cell line	sgMsh2	134765304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	0	0	NA	exonic	Dock1	nonsynonymous SNV	Dock1:NM_001033420:exon15:c.T1474C:p.F492L	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9976328	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	92	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9983829	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M5_p20	chr7	137453497	12A2p6	cell line	sgMsh2	137453497	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	102	0	0	NA	exonic	Glrx3	frameshift deletion	Glrx3:NM_023140:exon4:c.367delT:p.P124Lfs*15	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	94	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	138876716	12A2p6	cell line	sgMsh2	138876716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	147	0	0	NA	exonic	Ppp2r2d	nonsynonymous SNV	"Ppp2r2d:NM_026391:exon8:c.A1081G:p.S361G,Ppp2r2d:NM_001347618:exon9:c.A586G:p.S196G"	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9995995	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	140031057	12A2p6	cell line	sgMsh2	140031057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	128	0	0	NA	exonic	Tubgcp2	nonsynonymous SNV	"Tubgcp2:NM_001286007:exon4:c.T410C:p.L137P,Tubgcp2:NM_001286009:exon4:c.T410C:p.L137P,Tubgcp2:NM_133755:exon4:c.T410C:p.L137P"	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997727	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	140101391	12A2p6	cell line	sgMsh2	140101391	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	43	0	0	NA	exonic	Fuom	nonsynonymous SNV	"Fuom:NM_001286217:exon3:c.C166A:p.P56T,Fuom:NM_026928:exon3:c.C166A:p.P56T"	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	9.98E-08	GGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	228	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.999999	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Strelka2;Vardict	2	0.2897	107	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M5_p20	chr7	141274035	12A2p6	cell line	sgMsh2	141274035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	192	0	0	NA	exonic	Cdhr5	nonsynonymous SNV	"Cdhr5:NM_001114322:exon6:c.T539C:p.L180P,Cdhr5:NM_028069:exon6:c.T539C:p.L180P"	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999931	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	141431835	12A2p6	cell line	sgMsh2	141431835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	39	0	0	NA	exonic	Slc25a22	nonsynonymous SNV	"Slc25a22:NM_001177576:exon7:c.C491T:p.A164V,Slc25a22:NM_001360723:exon7:c.C491T:p.A164V,Slc25a22:NM_001360724:exon7:c.C251T:p.A84V,Slc25a22:NM_026646:exon7:c.C491T:p.A164V"	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.9678768	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	141638249	12A2p6	cell line	sgMsh2	141638249	T	C	SNV	Mutect2;MuSe;Vardict	3	0.044	1144	0	0	NA	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.A6195G:p.S2065S	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.189154199	3	1	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	146	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	136	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr7	141872548	12A2p6	cell line	sgMsh2	141872548	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	86	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon49:c.G14381T:p.G4794V	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	GGG	nonsynonymous	CCTG	8	CCTGCCTG	NA
M5_p20	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	56	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9885908	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	144520751	12A2p6	cell line	sgMsh2	144520751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	76	0	0	NA	exonic	Ppfia1	synonymous SNV	"Ppfia1:NM_001033319:exon4:c.T405C:p.H135H,Ppfia1:NM_001195086:exon4:c.T405C:p.H135H"	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.683534492	2	0.8218797	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	165	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999698	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	200	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9986293	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr7	144919377	12A2p6	cell line	sgMsh2	144919377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	80	0	0	NA	exonic	LTO1	synonymous SNV	LTO1:NM_001357869:exon4:c.T423C:p.P141P	7qF5	chr7-104329818-145323643	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	CTG	synonymous	G	5	GGGGG	NA
M5_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	393	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9999992	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	159	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9997628	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	600	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	1.00E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M5_p20	chr8	11454234	12A2p6	cell line	sgMsh2	11454234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	159	0	0	NA	exonic	Rab20	synonymous SNV	Rab20:NM_011227:exon2:c.C465A:p.A155A	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.765214714	2	0.7134579	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	286	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	4.21E-08	AAG	synonymous	NA	NA	NA	NA
M5_p20	chr8	12616134	12A2p6	cell line	sgMsh2	12616134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	84	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon21:c.A2447G:p.Q816R	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9975004	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	127	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	215	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.999998	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	97	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	TCG	synonymous	NA	NA	NA	NA
M5_p20	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	176	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9999276	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	15125173	12A2p6	cell line	sgMsh2	15125173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	83	0	0	NA	exonic	Myom2	nonsynonymous SNV	Myom2:NM_008664:exon32:c.T3751C:p.C1251R	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9973606	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	197	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9980998	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	15921821	12A2p6	cell line	sgMsh2	15921821	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon58:c.A9008T:p.Y3003F	8qA1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	170	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.999977	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	43	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9770849	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	21084450	12A2p6	cell line	sgMsh2	21084450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	148	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.A9G:p.T3T	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9999236	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	113	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9958499	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	23104908	12A2p6	cell line	sgMsh2	23104908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	138	0	0	NA	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon17:c.A2018G:p.H673R,Ank1:NM_001277280:exon17:c.A2018G:p.H673R,Ank1:NM_001277281:exon17:c.A1907G:p.H636R,Ank1:NM_001277284:exon17:c.A1907G:p.H636R,Ank1:NM_001277286:exon17:c.A1931G:p.H644R,Ank1:NM_001277289:exon17:c.A1931G:p.H644R,Ank1:NM_031158:exon17:c.A1931G:p.H644R"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.9997051	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	301	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1.91E-08	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	263	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M5_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	75	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	8.81E-09	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	25032976	12A2p6	cell line	sgMsh2	25032976	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	175	0	0	NA	exonic	Htra4	frameshift deletion	Htra4:NM_001081187:exon5:c.1001delG:p.G334Vfs*3	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr8	27121957	12A2p6	cell line	sgMsh2	27121957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	36	0	0	NA	exonic	Adgra2	synonymous SNV	Adgra2:NM_054044:exon19:c.T3933C:p.D1311D	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9317452	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	187	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9799048	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	70	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.994651	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	98	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	109	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9945044	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	93	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.739420959	2	0.6583011	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr8	40551654	12A2p6	cell line	sgMsh2	40551654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	83	0	0	NA	exonic	Mtmr7	nonsynonymous SNV	Mtmr7:NM_001040699:exon14:c.T1880C:p.V627A	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9935004	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	264	0	0	NA	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M5_p20	chr8	41303997	12A2p6	cell line	sgMsh2	41303997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	106	0	0	NA	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon23:c.T3945C:p.S1315S	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.7443258	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	850	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	650	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	180	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999867	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	45036912	12A2p6	cell line	sgMsh2	45036912	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	228	0	0	NA	exonic	Fat1	frameshift deletion	Fat1:NM_001081286:exon18:c.10791delG:p.G3599Afs*2	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M5_p20	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	220	0	0	NA	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9991833	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	123	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9997015	TTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	96	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M5_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	84	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9975004	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	55037411	12A2p6	cell line	sgMsh2	55037411	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	250	0	0	NA	exonic	Gpm6a	nonsynonymous SNV	"Gpm6a:NM_001253754:exon2:c.G88A:p.A30T,Gpm6a:NM_153581:exon2:c.G121A:p.A41T"	8qB1.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.846894936	1	0.9775326	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	282	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	174	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999815	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	185	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.932874117	1	0.9996071	TGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	160	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999603	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	58472973	12A2p6	cell line	sgMsh2	58472973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	119	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon3:c.A257C:p.E86A	8qB2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996287	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	179	0	0	NA	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	0.5943783	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	38	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	0.966245	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	154	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.998598	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	67960592	12A2p6	cell line	sgMsh2	67960592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	206	0	0	NA	exonic	Psd3	nonsynonymous SNV	Psd3:NM_177698:exon3:c.C1285T:p.P429S	8qB3.2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999968	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	68282404	12A2p6	cell line	sgMsh2	68282404	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	91	0	0	NA	exonic	Sh2d4a	frameshift deletion	Sh2d4a:NM_028182:exon2:c.174delA:p.E61Rfs*19	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	238	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	150	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999315	CGA	synonymous	NA	NA	NA	NA
M5_p20	chr8	69911801	12A2p6	cell line	sgMsh2	69911801	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Gatad2a	nonsynonymous SNV	Gatad2a:NM_001286450:exon12:c.A1585G:p.T529A	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9978769	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	103	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9991118	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	70243552	12A2p6	cell line	sgMsh2	70243552	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	124	0	0	NA	exonic	Sugp2	frameshift deletion	"Sugp2:NM_001168290:exon3:c.1174delT:p.L393fs*0,Sugp2:NM_172755:exon3:c.1174delT:p.L393fs*0"	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.898482445	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M5_p20	chr8	70509313	12A2p6	cell line	sgMsh2	70509313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	213	0	0	NA	exonic	Uba52	nonsynonymous SNV	"Uba52:NM_001348229:exon2:c.A173G:p.D58G,Uba52:NM_001348227:exon3:c.A173G:p.D58G,Uba52:NM_001348228:exon3:c.A173G:p.D58G,Uba52:NM_019883:exon3:c.A173G:p.D58G"	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.8587693	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	154	0	0	NA	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.999945	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	208	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9909152	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	88	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.98423	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M5_p20	chr8	72253610	12A2p6	cell line	sgMsh2	72253610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	208	0	0	NA	exonic	Ap1m1	nonsynonymous SNV	Ap1m1:NM_007456:exon9:c.G1024A:p.V342M	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999971	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	72449701	12A2p6	cell line	sgMsh2	72449701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	66	0	0	NA	exonic	1700030K09Rik	synonymous SNV	1700030K09Rik:NM_028170:exon3:c.T972C:p.S324S	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9933556	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	79	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9967192	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	109	0	0	NA	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9993596	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	77344744	12A2p6	cell line	sgMsh2	77344744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	222	0	0	NA	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon17:c.T1546C:p.F516L,Arhgap10:NM_001363420:exon17:c.T1237C:p.F413L,Arhgap10:NM_001363418:exon18:c.T1612C:p.F538L,Arhgap10:NM_001363419:exon18:c.T1303C:p.F435L,Arhgap10:NM_001363421:exon18:c.T1303C:p.F435L,Arhgap10:NM_030113:exon18:c.T1612C:p.F538L"	8qC1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999987	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	77344798	12A2p6	cell line	sgMsh2	77344798	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	126	0	0	NA	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon17:c.G1492A:p.V498M,Arhgap10:NM_001363420:exon17:c.G1183A:p.V395M,Arhgap10:NM_001363418:exon18:c.G1558A:p.V520M,Arhgap10:NM_001363419:exon18:c.G1249A:p.V417M,Arhgap10:NM_001363421:exon18:c.G1249A:p.V417M,Arhgap10:NM_030113:exon18:c.G1558A:p.V520M"	8qC1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.773812632	2	0.5279262	ACG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	79663746	12A2p6	cell line	sgMsh2	79663746	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	169	0	0	NA	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon12:c.G984A:p.K328K,Otud4:NM_001256033:exon12:c.G987A:p.K329K"	8qC1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9998762	AGC	synonymous	NA	NA	NA	NA
M5_p20	chr8	80708744	12A2p6	cell line	sgMsh2	80708744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	188	0	0	NA	exonic	Smarca5	nonsynonymous SNV	Smarca5:NM_053124:exon19:c.T2456C:p.I819T	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.335318807	3	0.9999926	AAT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr8	80784644	12A2p6	cell line	sgMsh2	80784644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	53	0	0	NA	exonic	Gab1	nonsynonymous SNV	"Gab1:NM_001301298:exon6:c.T1571C:p.L524P,Gab1:NM_021356:exon6:c.T1571C:p.L524P"	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.756616796	1	0.6224411	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	177	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999843	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	83294283	12A2p6	cell line	sgMsh2	83294283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	121	0	0	NA	exonic	Ucp1	synonymous SNV	Ucp1:NM_009463:exon4:c.A627G:p.A209A	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996671	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.227	111	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.975863708	1	0.9987369	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M5_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	210	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999974	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	37	0	0	NA	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9684922	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	58	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.902781404	1	0.9483689	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	86019109	12A2p6	cell line	sgMsh2	86019109	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	209	0	0	NA	exonic	Phkb	nonsynonymous SNV	"Phkb:NM_001364412:exon20:c.C1954T:p.H652Y,Phkb:NM_199446:exon21:c.C1930T:p.H644Y,Phkb:NM_001364411:exon23:c.C1777T:p.H593Y"	8qC3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999973	TCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	214	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9858668	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	81	0	0	NA	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9869652	TTT	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	323	0	0	NA	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	6.46E-09	ATC	synonymous	NA	NA	NA	NA
M5_p20	chr8	93353526	12A2p6	cell line	sgMsh2	93353526	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	159	0	0	NA	exonic	Ces1h	nonsynonymous SNV	Ces1h:NM_001370830:exon12:c.C1359A:p.S453R	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999581	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	196	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999944	CAA	synonymous	NA	NA	NA	NA
M5_p20	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	127	0	0	NA	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.588957392	2	0.9990722	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	72	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9952012	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	128	0	0	NA	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.992512	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	95068179	12A2p6	cell line	sgMsh2	95068179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	244	0	0	NA	exonic	Drc7	nonsynonymous SNV	Drc7:NM_001042715:exon8:c.T1211C:p.L404P	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999996	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	95101421	12A2p6	cell line	sgMsh2	95101421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	85	0	0	NA	exonic	Kifc3	synonymous SNV	"Kifc3:NM_001145832:exon16:c.C2047T:p.L683L,Kifc3:NM_001372315:exon18:c.C2458T:p.L820L,Kifc3:NM_010631:exon18:c.C2458T:p.L820L,Kifc3:NM_001372316:exon19:c.C2245T:p.L749L,Kifc3:NM_001372317:exon19:c.C2245T:p.L749L,Kifc3:NM_001145831:exon20:c.C2320T:p.L774L,Kifc3:NM_001372312:exon20:c.C2926T:p.L976L,Kifc3:NM_001372314:exon20:c.C2779T:p.L927L,Kifc3:NM_001372313:exon21:c.C2779T:p.L927L"	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9762936	AGT	synonymous	NA	NA	NA	NA
M5_p20	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	119	0	0	NA	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9904563	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	411	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1.04E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	102636982	12A2p6	cell line	sgMsh2	102636982	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	390	0	0	NA	exonic	Cdh11	nonsynonymous SNV	Cdh11:NM_009866:exon12:c.G1840A:p.G614S	8qD1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1.14E-09	CCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	244	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999996	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	74	0	0	NA	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	TCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	104526304	12A2p6	cell line	sgMsh2	104526304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	201	0	0	NA	exonic	Nae1	nonsynonymous SNV	Nae1:NM_144931:exon7:c.A487G:p.R163G	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9999706	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	167	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9986159	CTT	synonymous	NA	NA	NA	NA
M5_p20	chr8	104630778	12A2p6	cell line	sgMsh2	104630778	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.4	21	0	0	NA	exonic	Rrad	nonsynonymous SNV	Rrad:NM_019662:exon2:c.C136A:p.L46I	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9277295	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	611	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	GAC	synonymous	NA	NA	NA	NA
M5_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	146	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999148	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105663967	12A2p6	cell line	sgMsh2	105663967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	93	0	0	NA	exonic	Ctcf	nonsynonymous SNV	"Ctcf:NM_001358924:exon3:c.A205G:p.T69A,Ctcf:NM_181322:exon3:c.A205G:p.T69A"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.748018878	2	9.55E-08	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105695429	12A2p6	cell line	sgMsh2	105695429	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	53	0	0	NA	exonic	Carmil2	nonsynonymous SNV	Carmil2:NM_001357333:exon32:c.C3329A:p.P1110H	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9865897	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	95	0	0	NA	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986266	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	155	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M5_p20	chr8	105844945	12A2p6	cell line	sgMsh2	105844945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	269	0	0	NA	exonic	Cenpt	nonsynonymous SNV	Cenpt:NM_177150:exon13:c.A1475G:p.Y492C	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9996774	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	211	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999975	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	152	0	0	NA	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.842595977	1	0.9342102	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	196	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999944	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	50	0	0	NA	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9842431	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	106424126	12A2p6	cell line	sgMsh2	106424126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	109	0	0	NA	exonic	Zfp90	nonsynonymous SNV	"Zfp90:NM_001368328:exon4:c.T530C:p.V177A,Zfp90:NM_001368329:exon4:c.T446C:p.V149A,Zfp90:NM_001368330:exon4:c.T374C:p.V125A,Zfp90:NM_001368331:exon4:c.T344C:p.V115A,Zfp90:NM_011764:exon4:c.T470C:p.V157A"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.958059	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	154	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.999945	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	94	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.477184456	2	0.8910149	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	124	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	GAG	synonymous	NA	NA	NA	NA
M5_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	173	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999805	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M5_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	463	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.988760585	1	1.01E-09	ACA	synonymous	NA	NA	NA	NA
M5_p20	chr8	109628770	12A2p6	cell line	sgMsh2	109628770	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	126	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon7:c.G2169A:p.T723T,Pkd1l3:NM_001286454:exon7:c.G2229A:p.T743T,Pkd1l3:NM_181544:exon7:c.G2229A:p.T743T"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.550266761	2	0.9990453	CGG	synonymous	AAC	9	AACAACAAC	NA
M5_p20	chr8	109724013	12A2p6	cell line	sgMsh2	109724013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	258	0	0	NA	exonic	Zfp821	nonsynonymous SNV	"Zfp821:NM_001363382:exon7:c.A637G:p.S213G,Zfp821:NM_001286393:exon8:c.A184G:p.S62G,Zfp821:NM_001363381:exon8:c.A637G:p.S213G,Zfp821:NM_001363383:exon8:c.A637G:p.S213G,Zfp821:NM_001363384:exon8:c.A184G:p.S62G,Zfp821:NM_001363386:exon8:c.A184G:p.S62G,Zfp821:NM_029468:exon8:c.A637G:p.S213G,Zfp821:NM_001167946:exon9:c.A637G:p.S213G,Zfp821:NM_001286391:exon9:c.A184G:p.S62G,Zfp821:NM_001363380:exon9:c.A637G:p.S213G,Zfp821:NM_001363385:exon9:c.A184G:p.S62G"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.998874	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	109962037	12A2p6	cell line	sgMsh2	109962037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	30	0	0	NA	exonic	Marveld3	nonsynonymous SNV	"Marveld3:NM_028584:exon1:c.A71G:p.H24R,Marveld3:NM_212447:exon1:c.A71G:p.H24R"	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.954508	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	235	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.91997724	1	0.9998314	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	100	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9389661	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	152	0	0	NA	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9985009	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	111112792	12A2p6	cell line	sgMsh2	111112792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	213	0	0	NA	exonic	Pdpr	synonymous SNV	Pdpr:NM_198308:exon5:c.T546C:p.D182D	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999978	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	178	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999851	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	111288399	12A2p6	cell line	sgMsh2	111288399	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	182	0	0	NA	exonic	Rfwd3	nonsynonymous SNV	Rfwd3:NM_146218:exon5:c.C820A:p.P274T	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.999988	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	45	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9794044	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	113639733	12A2p6	cell line	sgMsh2	113639733	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	188	0	0	NA	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon4:c.C1360A:p.L454M,Mon1b:NM_001048143:exon5:c.C1360A:p.L454M"	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999914	ACT	nonsynonymous	AGCGAC	12	AGCGACAGCGAC	NA
M5_p20	chr8	114230323	12A2p6	cell line	sgMsh2	114230323	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	192	0	0	NA	exonic	Vat1l	frameshift deletion	Vat1l:NM_173016:exon2:c.345delA:p.G117Dfs*34	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.911379322	NA	NA	TAA	frameshift	NA	NA	NA	-1
M5_p20	chr8	117758761	12A2p6	cell line	sgMsh2	117758761	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.19	192	0	0	NA	exonic	Hsd17b2	frameshift insertion	Hsd17b2:NM_008290:exon5:c.962_963insA:p.V322Cfs*39	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.816802223	NA	NA	CCT	frameshift	NA	NA	NA	1
M5_p20	chr8	121116811	12A2p6	cell line	sgMsh2	121116811	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	52	0	0	NA	exonic	Foxc2	nonsynonymous SNV	Foxc2:NM_013519:exon1:c.C197A:p.P66H	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9858485	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	126	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.821101182	1	0.837894	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	121939729	12A2p6	cell line	sgMsh2	121939729	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	0	0	NA	exonic	Car5a	synonymous SNV	Car5a:NM_007608:exon2:c.A228G:p.P76P	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990096	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	115	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9995382	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M5_p20	chr8	122454948	12A2p6	cell line	sgMsh2	122454948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	51	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon3:c.A769G:p.T257A	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.9647776	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	64	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.735122	2	0.5233328	GCG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	122496403	12A2p6	cell line	sgMsh2	122496403	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	86	0	0	NA	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon19:c.G2646T:p.E882D,Piezo1:NM_001357349:exon19:c.G2649T:p.E883D"	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	CCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	42	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.971564749	1	0.9659924	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	107	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992858	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	105	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992036	GGC	synonymous	NA	NA	NA	NA
M5_p20	chr8	123369263	12A2p6	cell line	sgMsh2	123369263	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	89	0	0	NA	exonic	Spire2	nonsynonymous SNV	Spire2:NM_172287:exon15:c.T2026C:p.C676R	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9980959	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	28	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9495278	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	213	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9890278	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M5_p20	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	109	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.9993596	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	86	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	123997433	12A2p6	cell line	sgMsh2	123997433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	120	0	0	NA	exonic	Taf5l	nonsynonymous SNV	"Taf5l:NM_001357315:exon5:c.A1646G:p.D549G,Taf5l:NM_133966:exon5:c.A1646G:p.D549G"	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.558864679	2	0.9989702	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	230	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999991	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.204	119	0	0	NA	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	1	0.87698765	1	0.9730862	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	41	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.97	4.169990295	NA	2	1	1	0.974511	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	131	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	305	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.56E-08	GGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	159	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999581	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	277	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9999887	ATG	synonymous	GAT	8	GATGATGA	NA
M5_p20	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	80	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	TCA	synonymous	NA	NA	NA	NA
M5_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	262	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	7833726	12A2p6	cell line	sgMsh2	7833726	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	200	0	0	NA	exonic	Birc2	synonymous SNV	"Birc2:NM_001291503:exon2:c.G753A:p.R251R,Birc2:NM_007465:exon2:c.G753A:p.R251R"	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9991734	ACC	synonymous	NA	NA	NA	NA
M5_p20	chr9	8649519	12A2p6	cell line	sgMsh2	8649519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	115	0	0	NA	exonic	Trpc6	nonsynonymous SNV	Trpc6:NM_013838:exon6:c.T1729C:p.Y577H	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9995382	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	14357861	12A2p6	cell line	sgMsh2	14357861	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	127	0	0	NA	exonic	Endod1	synonymous SNV	Endod1:NM_028013:exon2:c.G327A:p.E109E	9qA1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.99976	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.275	136	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998531	TAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	15332156	12A2p6	cell line	sgMsh2	15332156	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	204	0	0	NA	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon15:c.C5003T:p.A1668V	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999964	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	15944850	12A2p6	cell line	sgMsh2	15944850	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	143	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon21:c.A11647T:p.I3883F	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9990169	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	160	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8708695	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Vardict	2	0.158	106	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.679235533	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr9	19036033	12A2p6	cell line	sgMsh2	19036033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	90	0	0	NA	exonic	Olfr835	nonsynonymous SNV	Olfr835:NM_001012266:exon1:c.A909T:p.K303N	9qA2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9981968	AAT	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	207	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.9994786	TAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	20054659	12A2p6	cell line	sgMsh2	20054659	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	105	0	0	NA	exonic	Olfr867	nonsynonymous SNV	Olfr867:NM_001011748:exon1:c.C803T:p.T268I	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.696431369	2	0.09525672	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	150	0	0	NA	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.795307427	1	0.6337173	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	90	0	0	NA	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.924276199	1	0.9867398	CAA	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr9	21309648	12A2p6	cell line	sgMsh2	21309648	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	86	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon2:c.A187C:p.S63R,Ap1m2:NM_009678:exon2:c.A187C:p.S63R"	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9977582	CTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	70	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.994651	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	83	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9919927	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	36	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9667845	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M5_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	203	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999962	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	122	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996847	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M5_p20	chr9	27322727	12A2p6	cell line	sgMsh2	27322727	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	100	0	0	NA	exonic	Igsf9b	synonymous SNV	"Igsf9b:NM_001326702:exon9:c.C1221T:p.G407G,Igsf9b:NM_001384263:exon9:c.C1221T:p.G407G,Igsf9b:NM_001384264:exon9:c.C1221T:p.G407G"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9948574	GCC	synonymous	NA	NA	NA	NA
M5_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	47	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9814936	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9986266	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.114	55	0	0	NA	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.490081334	2	0.08952669	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9990621	CGC	synonymous	NA	NA	NA	NA
M5_p20	chr9	31419820	12A2p6	cell line	sgMsh2	31419820	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	234	0	0	NA	exonic	Nfrkb	synonymous SNV	"Nfrkb:NM_001359654:exon25:c.T2907C:p.S969S,Nfrkb:NM_172766:exon25:c.T3636C:p.S1212S"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.911379322	1	0.9996857	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	340	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999995	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr9	35136421	12A2p6	cell line	sgMsh2	35136421	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	186	0	0	NA	exonic	Dcps	nonsynonymous SNV	Dcps:NM_027030:exon3:c.C442T:p.R148C	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999904	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	268	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	64	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.838297018	1	0.8642349	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	152	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.803905345	1	0.7153598	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	37898140	12A2p6	cell line	sgMsh2	37898140	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	233	0	0	NA	exonic	Olfr145	synonymous SNV	Olfr145:NM_146313:exon1:c.T735A:p.I245I	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	TTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	348	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	2.40E-09	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Vardict	2	0.253	129	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M5_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	233	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999993	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	38116618	12A2p6	cell line	sgMsh2	38116618	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	284	0	0	NA	exonic	Olfr889	frameshift deletion	Olfr889:NM_146482:exon1:c.821delT:p.Y276Ifs*7	9qA4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M5_p20	chr9	38253495	12A2p6	cell line	sgMsh2	38253495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	509	0	0	NA	exonic	Olfr143	nonsynonymous SNV	Olfr143:NM_146806:exon1:c.T77C:p.L26P	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	38254138	12A2p6	cell line	sgMsh2	38254138	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	364	0	0	NA	exonic	Olfr143	synonymous SNV	Olfr143:NM_146806:exon1:c.C720A:p.A240A	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.58E-09	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	639	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr9	38403054	12A2p6	cell line	sgMsh2	38403054	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	272	0	0	NA	exonic	Olfr147	frameshift deletion	Olfr147:NM_146869:exon2:c.179delC:p.M62Cfs*23	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.8296991	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	420	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	3.93E-08	TTT	synonymous	NA	NA	NA	NA
M5_p20	chr9	38581310	12A2p6	cell line	sgMsh2	38581310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	229	0	0	NA	exonic	Olfr912	nonsynonymous SNV	Olfr912:NM_146810:exon2:c.A32G:p.E11G	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999989	GAA	nonsynonymous	ATTC	8	ATTCATTC	NA
M5_p20	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	277	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	309	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.27E-08	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	344	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9999998	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	348	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	2.40E-09	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	223	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.687833451	2	0.99902	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	181	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9999278	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	367	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	1.50E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	39462266	12A2p6	cell line	sgMsh2	39462266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	412	0	0	NA	exonic	Olfr954	synonymous SNV	Olfr954:NM_146331:exon1:c.T834C:p.S278S	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.04E-09	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	39572368	12A2p6	cell line	sgMsh2	39572368	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	182	0	0	NA	exonic	Olfr959	nonsynonymous SNV	Olfr959:NM_146508:exon1:c.T890G:p.L297R	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.999451	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	278	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9998722	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	39719725	12A2p6	cell line	sgMsh2	39719725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	568	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T497C:p.V166A	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	2.32E-09	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	420	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	5.57E-09	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	69	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9943529	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	160	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9992348	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M5_p20	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	44	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9782749	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	175	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.859791813	1	0.9765201	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	82	0	0	NA	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9972131	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	44105221	12A2p6	cell line	sgMsh2	44105221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	70	0	0	NA	exonic	Mfrp	synonymous SNV	"Mfrp:NM_001190314:exon10:c.G1212T:p.T404T,Mfrp:NM_147126:exon10:c.G1212T:p.T404T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.994651	CGG	synonymous	NA	NA	NA	NA
M5_p20	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	22	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9313098	ACG	synonymous	NA	NA	NA	NA
M5_p20	chr9	44140473	12A2p6	cell line	sgMsh2	44140473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	88	0	0	NA	exonic	Mcam	nonsynonymous SNV	"Mcam:NM_001359530:exon12:c.T1525C:p.S509P,Mcam:NM_023061:exon12:c.T1525C:p.S509P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9979894	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	44402403	12A2p6	cell line	sgMsh2	44402403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	111	0	0	NA	exonic	Slc37a4	nonsynonymous SNV	"Slc37a4:NM_008063:exon8:c.G1225A:p.V409I,Slc37a4:NM_001293630:exon9:c.G1225A:p.V409I,Slc37a4:NM_001293631:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378830:exon9:c.G1225A:p.V409I,Slc37a4:NM_001378834:exon9:c.G1138A:p.V380I,Slc37a4:NM_001357729:exon10:c.G1288A:p.V430I,Slc37a4:NM_001357730:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378829:exon10:c.G1288A:p.V430I,Slc37a4:NM_001378831:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378832:exon10:c.G1201A:p.V401I,Slc37a4:NM_001378833:exon10:c.G1201A:p.V401I"	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994257	AGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.335	157	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M5_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	51	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.985067	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	44715884	12A2p6	cell line	sgMsh2	44715884	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	99	0	0	NA	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon6:c.C1263A:p.P421P	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988955	AGG	synonymous	NA	NA	NA	NA
M5_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	98	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9988337	TGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	45950101	12A2p6	cell line	sgMsh2	45950101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	163	0	0	NA	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_001289668:exon7:c.T734C:p.V245A,Sidt2:NM_001359653:exon7:c.T734C:p.V245A,Sidt2:NM_172257:exon7:c.T734C:p.V245A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999663	CAC	nonsynonymous	ACC	11	ACCACCACCAC	NA
M5_p20	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	95	0	0	NA	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9709382	CTC	synonymous	NA	NA	NA	NA
M5_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	74	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	50494646	12A2p6	cell line	sgMsh2	50494646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	134	0	0	NA	exonic	Plet1	synonymous SNV	Plet1:NM_029639:exon1:c.T84C:p.S28S	9qA5.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.958667872	1	0.9991636	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	51850243	12A2p6	cell line	sgMsh2	51850243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	137	0	0	NA	exonic	Arhgap20	nonsynonymous SNV	Arhgap20:NM_175535:exon15:c.G3393T:p.K1131N	9qA5.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998609	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	299	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9999976	TTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	305	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.713627205	2	0.999536	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	143	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.868389731	1	0.9750487	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	55609946	12A2p6	cell line	sgMsh2	55609946	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	249	0	0	NA	exonic	Scaper	synonymous SNV	"Scaper:NM_001081341:exon27:c.A3204T:p.P1068P,Scaper:NM_001357652:exon27:c.A3186T:p.P1062P"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	56206453	12A2p6	cell line	sgMsh2	56206453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	77	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon7:c.C5203T:p.R1735C	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.756616796	1	5.85E-07	CGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.039	964	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.167659404	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	278	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M5_p20	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	35	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9649875	CAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	57530298	12A2p6	cell line	sgMsh2	57530298	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	347	0	0	NA	exonic	Cox5a	nonsynonymous SNV	Cox5a:NM_007747:exon3:c.C263T:p.A88V	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	2.93E-09	GCA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	57548646	12A2p6	cell line	sgMsh2	57548646	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	66	0	0	NA	exonic	Mpi	synonymous SNV	Mpi:NM_025837:exon5:c.T552C:p.G184G	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.898482445	1	0.9541052	CAC	synonymous	CCCA	9	CCCACCCAC	NA
M5_p20	chr9	58233168	12A2p6	cell line	sgMsh2	58233168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	69	0	0	NA	exonic	Pml	synonymous SNV	"Pml:NM_001311088:exon4:c.T1275C:p.P425P,Pml:NM_008884:exon4:c.T1275C:p.P425P,Pml:NM_178087:exon4:c.T1275C:p.P425P"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.683534492	2	0.7787786	CAG	synonymous	NA	NA	NA	NA
M5_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	118	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9996079	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	169	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M5_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	165	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999698	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	185	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.980162667	1	0.9999701	GGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	60602735	12A2p6	cell line	sgMsh2	60602735	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	159	0	0	NA	exonic	Lrrc49	synonymous SNV	"Lrrc49:NM_001146046:exon12:c.C1251T:p.T417T,Lrrc49:NM_001311095:exon12:c.C1233T:p.T411T,Lrrc49:NM_001146047:exon13:c.C1431T:p.T477T,Lrrc49:NM_145616:exon13:c.C1449T:p.T483T"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999581	GGG	synonymous	NA	NA	NA	NA
M5_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	137	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998609	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	66	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9933556	GAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	28	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9495278	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	63146869	12A2p6	cell line	sgMsh2	63146869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	64	0	0	NA	exonic	Skor1	nonsynonymous SNV	Skor1:NM_172446:exon1:c.G45T:p.W15C	9qB	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.752317837	1	0.5574022	CCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	65556120	12A2p6	cell line	sgMsh2	65556120	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	105	0	0	NA	exonic	Plekho2	nonsynonymous SNV	Plekho2:NM_153119:exon6:c.A1446C:p.K482N	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992036	GTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr9	65651680	12A2p6	cell line	sgMsh2	65651680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	134	0	0	NA	exonic	Rbpms2	synonymous SNV	Rbpms2:NM_028030:exon6:c.T534C:p.A178A	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8614283	CTG	synonymous	CTG	16	CTGCTGCTGCTGCTGC	NA
M5_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	312	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	1.10E-08	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	185	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.999754	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	149	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999277	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M5_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	275	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	60	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9908067	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	104	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.999159	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	71284968	12A2p6	cell line	sgMsh2	71284968	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	130	0	0	NA	exonic	Aldh1a2	frameshift deletion	Aldh1a2:NM_009022:exon10:c.1201delC:p.T402Pfs*24	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M5_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	95	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.885585568	1	0.9673458	GTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	71849873	12A2p6	cell line	sgMsh2	71849873	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	69	0	0	NA	exonic	Tcf12	nonsynonymous SNV	"Tcf12:NM_001253864:exon12:c.A1449C:p.K483N,Tcf12:NM_001253863:exon13:c.A1521C:p.K507N,Tcf12:NM_001253865:exon14:c.A1302C:p.K434N,Tcf12:NM_001253862:exon19:c.A1959C:p.K653N,Tcf12:NM_011544:exon20:c.A2031C:p.K677N"	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.945770995	1	0.9831954	CTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	124	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9997173	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999644	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	185	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9836112	AAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	150	0	0	NA	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.262236503	3	0.9999997	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	181	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999874	AAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	254	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	176	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999834	TTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	181	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.9660778	GTT	synonymous	NA	NA	NA	NA
M5_p20	chr9	79674801	12A2p6	cell line	sgMsh2	79674801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	0	0	NA	exonic	Col12a1	synonymous SNV	Col12a1:NM_001290308:exon22:c.T4167G:p.T1389T	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.915678281	1	0.987248	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	123	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
M5_p20	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	202	0	0	NA	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.937173077	1	0.9998315	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	254	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2381	42	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M5_p20	chr9	86550146	12A2p6	cell line	sgMsh2	86550146	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	213	0	0	NA	exonic	Dop1a	frameshift deletion	Dop1a:NM_177208:exon37:c.6932delA:p.N2312Ifs*21	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	155	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999479	TAG	synonymous	NA	NA	NA	NA
M5_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	103	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9991118	TTT	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr9	87225934	12A2p6	cell line	sgMsh2	87225934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	97	0	0	NA	exonic	Cep162	synonymous SNV	Cep162:NM_199316:exon13:c.A1402C:p.R468R	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9987684	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	80	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9968929	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	89974840	12A2p6	cell line	sgMsh2	89974840	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	175	0	0	NA	exonic	Rasgrf1	synonymous SNV	"Rasgrf1:NM_001357743:exon9:c.C1344T:p.G448G,Rasgrf1:NM_011245:exon9:c.C1350T:p.G450G"	9qE3.1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999825	GCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	95228955	12A2p6	cell line	sgMsh2	95228955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	106	0	0	NA	exonic	Slc9a9	nonsynonymous SNV	Slc9a9:NM_177909:exon16:c.A1825G:p.K609E	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9992458	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	95937526	12A2p6	cell line	sgMsh2	95937526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	147	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon39:c.A6565G:p.M2189V	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9999096	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	95969548	12A2p6	cell line	sgMsh2	95969548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	165	0	0	NA	exonic	Xrn1	synonymous SNV	"Xrn1:NM_001311130:exon5:c.T618C:p.D206D,Xrn1:NM_011916:exon5:c.T618C:p.D206D"	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999698	ATG	synonymous	NA	NA	NA	NA
M5_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	140	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.851193895	1	0.948305	GAA	nonsynonymous	T	5	TTTTT	NA
M5_p20	chr9	96546304	12A2p6	cell line	sgMsh2	96546304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	154	0	0	NA	exonic	Rasa2	synonymous SNV	Rasa2:NM_053268:exon20:c.A1956G:p.P652P	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.999945	CTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	176	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.730823041	2	0.9499105	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	82	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M5_p20	chr9	99320290	12A2p6	cell line	sgMsh2	99320290	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	exonic	Esyt3	nonsynonymous SNV	Esyt3:NM_177775:exon16:c.G1567A:p.V523M	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.928575158	1	0.9626945	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	99663045	12A2p6	cell line	sgMsh2	99663045	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	94	0	0	NA	exonic	Dzip1l	nonsynonymous SNV	"Dzip1l:NM_001311142:exon13:c.C1717T:p.L573F,Dzip1l:NM_028258:exon13:c.C1717T:p.L573F"	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9985498	TCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	354	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	2.01E-09	GAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	48	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9824588	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	46	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9804764	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	303	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.941472036	1	0.999997	AAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	105022362	12A2p6	cell line	sgMsh2	105022362	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	188	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.C1297T:p.P433S,Cpne4:NM_001378996:exon14:c.C1267T:p.P423S,Cpne4:NM_028719:exon14:c.C1243T:p.P415S"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.889884527	1	0.9961892	TCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	105071376	12A2p6	cell line	sgMsh2	105071376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	74	0	0	NA	exonic	Mrpl3	synonymous SNV	"Mrpl3:NM_001364512:exon7:c.T315C:p.T105T,Mrpl3:NM_001364513:exon7:c.T630C:p.T210T,Mrpl3:NM_053159:exon7:c.T630C:p.T210T"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.995695	GTA	synonymous	NA	NA	NA	NA
M5_p20	chr9	105397382	12A2p6	cell line	sgMsh2	105397382	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	214	0	0	NA	exonic	Aste1	nonsynonymous SNV	"Aste1:NM_025651:exon2:c.G820C:p.V274L,Aste1:NM_001357902:exon3:c.G637C:p.V213L"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9999785	CGT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	105715324	12A2p6	cell line	sgMsh2	105715324	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	140	0	0	NA	exonic	Col6a6	frameshift deletion	Col6a6:NM_001102607:exon30:c.5185delT:p.S1729Pfs*46	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	160	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999603	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	105928109	12A2p6	cell line	sgMsh2	105928109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	163	0	0	NA	exonic	Col6a5	synonymous SNV	Col6a5:NM_001167923:exon8:c.T3597C:p.N1199N	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999663	TAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	97	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9987684	CAA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.127	54	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.545967801	2	0.9286075	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	111	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994257	ACT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	106896764	12A2p6	cell line	sgMsh2	106896764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	63	0	0	NA	exonic	Dock3	frameshift deletion	Dock3:NM_153413:exon52:c.5555delC:p.P1852Rfs*44	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M5_p20	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	130	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9929055	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	0	0	NA	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9994257	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	108050857	12A2p6	cell line	sgMsh2	108050857	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	142	0	0	NA	exonic	Gmppb	nonsynonymous SNV	"Gmppb:NM_177910:exon7:c.A649G:p.M217V,Gmppb:NM_001357682:exon8:c.A649G:p.M217V"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.997358503	1	0.9998817	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M5_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	178	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999851	CAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	150	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.756616796	2	0.7614589	CTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	108110038	12A2p6	cell line	sgMsh2	108110038	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	61	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon5:c.A8514G:p.I2838M	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.537369883	2	0.9543876	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	108305809	12A2p6	cell line	sgMsh2	108305809	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	52	0	0	NA	exonic	Tcta	nonsynonymous SNV	"Tcta:NM_001311156:exon1:c.C136A:p.L46M,Tcta:NM_133986:exon1:c.C136A:p.L46M"	9qF1	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9858485	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	78	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M5_p20	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	83	0	0	NA	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9973606	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	95	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.8296991	1	0.8611964	TAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	88	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.962966831	1	0.9947679	GTG	synonymous	NA	NA	NA	NA
M5_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	108	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9993237	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	226	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.864090772	1	0.9908987	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	110385878	12A2p6	cell line	sgMsh2	110385878	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	174	0	0	NA	exonic	Ptpn23	nonsynonymous SNV	Ptpn23:NM_001081043:exon24:c.T4535G:p.V1512G	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.907080363	1	0.9978442	GAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	110390906	12A2p6	cell line	sgMsh2	110390906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	230	0	0	NA	exonic	Ptpn23	synonymous SNV	Ptpn23:NM_001081043:exon12:c.T948C:p.N316N	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999991	CAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	209	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999973	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M5_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	85	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.954368913	1	0.9926201	ATA	synonymous	NA	NA	NA	NA
M5_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	59	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9902963	GGA	nonsynonymous	G	5	GGGGG	NA
M5_p20	chr9	112127355	12A2p6	cell line	sgMsh2	112127355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	65	0	0	NA	exonic	Arpp21	nonsynonymous SNV	"Arpp21:NM_001177617:exon12:c.A1247G:p.Q416R,Arpp21:NM_001177616:exon14:c.A1394G:p.Q465R,Arpp21:NM_001177618:exon14:c.A1454G:p.Q485R,Arpp21:NM_001362014:exon14:c.A1454G:p.Q485R,Arpp21:NM_001362016:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362017:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362018:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362038:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362039:exon14:c.A1394G:p.Q465R,Arpp21:NM_001362010:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362011:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362012:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362015:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362028:exon15:c.A1496G:p.Q499R,Arpp21:NM_001362029:exon15:c.A1496G:p.Q499R,Arpp21:NM_001362030:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362031:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362032:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362033:exon15:c.A1493G:p.Q498R,Arpp21:NM_001362034:exon15:c.A1451G:p.Q484R,Arpp21:NM_001362035:exon15:c.A1451G:p.Q484R,Arpp21:NM_001362036:exon15:c.A1454G:p.Q485R,Arpp21:NM_001362037:exon15:c.A1454G:p.Q485R,Arpp21:NM_033264:exon15:c.A1553G:p.Q518R,Arpp21:NM_001362013:exon16:c.A1454G:p.Q485R,Arpp21:NM_001362020:exon16:c.A1556G:p.Q519R,Arpp21:NM_001362021:exon16:c.A1556G:p.Q519R,Arpp21:NM_001362022:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362023:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362024:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362025:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362026:exon16:c.A1553G:p.Q518R,Arpp21:NM_001362027:exon16:c.A1550G:p.Q517R,Arpp21:NM_001362040:exon16:c.A707G:p.Q236R,Arpp21:NM_001362041:exon16:c.A704G:p.Q235R"	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9929857	CTG	nonsynonymous	TGC	8	TGCTGCTG	NA
M5_p20	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	43	0	0	NA	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9770849	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	110	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9993936	ATC	nonsynonymous	A	5	AAAAA	NA
M5_p20	chr9	115257544	12A2p6	cell line	sgMsh2	115257544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	37	0	0	NA	exonic	Stt3b	nonsynonymous SNV	Stt3b:NM_024222:exon7:c.T1006C:p.Y336H	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9684922	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	119105859	12A2p6	cell line	sgMsh2	119105859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	156	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon2:c.A469G:p.M157V,Dlec1:NM_001368821:exon2:c.A469G:p.M157V,Dlec1:NM_177117:exon2:c.A469G:p.M157V"	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999506	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	215	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.999998	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	119127041	12A2p6	cell line	sgMsh2	119127041	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	135	0	0	NA	exonic	Dlec1	synonymous SNV	"Dlec1:NM_001368820:exon14:c.C2148A:p.P716P,Dlec1:NM_001368821:exon14:c.C2148A:p.P716P,Dlec1:NM_177117:exon14:c.C2151A:p.P717P"	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998448	CCT	synonymous	NA	NA	NA	NA
M5_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	76	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.9961382	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	135	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9998448	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M5_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	62	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	2	1	1	0.991749	CCC	synonymous	NA	NA	NA	NA
M5_p20	chr9	119950626	12A2p6	cell line	sgMsh2	119950626	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	45	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon10:c.G1119T:p.Q373H	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9794044	AGG	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	170	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.999977	GAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	122892365	12A2p6	cell line	sgMsh2	122892365	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	71	0	0	NA	exonic	Zkscan7	nonsynonymous SNV	Zkscan7:NM_001177505:exon4:c.A604G:p.T202A	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9949336	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	123011533	12A2p6	cell line	sgMsh2	123011533	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	119	0	0	NA	exonic	Kif15	synonymous SNV	Kif15:NM_010620:exon30:c.A3591G:p.Q1197Q	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.96726579	1	0.9988319	AAT	synonymous	NA	NA	NA	NA
M5_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	131	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.999807	CAC	synonymous	NA	NA	NA	NA
M5_p20	chr9	123119243	12A2p6	cell line	sgMsh2	123119243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	191	0	0	NA	exonic	Exosc7	synonymous SNV	Exosc7:NM_001081188:exon3:c.T162C:p.G54G	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	1	0.9999927	GTC	synonymous	NA	NA	NA	NA
M5_p20	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	181	0	0	NA	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	0.825400141	1	0.8780901	ATA	nonsynonymous	NA	NA	NA	NA
M5_p20	chr9	124029335	12A2p6	cell line	sgMsh2	124029335	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	174	0	0	NA	exonic	Ccr3	frameshift deletion	Ccr3:NM_009914:exon2:c.706delA:p.K238Nfs*11	9qF4	chr9-3190600-124127055	4	2	2	0.97	4.169990295	NA	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M5_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	39	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M5_p20	chrX	7616007	12A2p6	cell line	sgMsh2	7616007	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	66	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon14:c.C1729A:p.L577I	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	7641185	12A2p6	cell line	sgMsh2	7641185	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	123	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon3:c.C191T:p.A64V	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	84	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.562	103	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	71	0	0	NA	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M5_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	200	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.518	166	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	20718726	12A2p6	cell line	sgMsh2	20718726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	73	0	0	NA	exonic	Usp11	synonymous SNV	"Usp11:NM_145628:exon17:c.A2211G:p.P737P,Usp11:NM_001358931:exon18:c.A1869G:p.P623P"	XqA1.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M5_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	184	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	49793868	12A2p6	cell line	sgMsh2	49793868	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.121	46	0	0	NA	exonic	Igsf1	nonsynonymous SNV	Igsf1:NM_177915:exon5:c.G673T:p.V225F	XqA5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.529	53	0	0	NA	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	57101982	12A2p6	cell line	sgMsh2	57101982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	97	0	0	NA	exonic	Vgll1	nonsynonymous SNV	"Vgll1:NM_133251:exon6:c.T685C:p.C229R,Vgll1:NM_001313763:exon7:c.T685C:p.C229R"	XqA6	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	62	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	99	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M5_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	181	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	103	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M5_p20	chrX	74369835	12A2p6	cell line	sgMsh2	74369835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	44	0	0	NA	exonic	Slc10a3	synonymous SNV	"Slc10a3:NM_001256104:exon2:c.A1038G:p.L346L,Slc10a3:NM_145406:exon3:c.A1038G:p.L346L"	XqA7.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M5_p20	chrX	75574969	12A2p6	cell line	sgMsh2	75574969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	27	0	0	NA	exonic	Rab39b	nonsynonymous SNV	Rab39b:NM_175122:exon2:c.G254A:p.G85D	XqA7.3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	82	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	78	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M5_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	122	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	73	0	0	NA	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	19	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	97	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.493	77	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M5_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.574	83	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M5_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	119	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M5_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.545	53	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	106252195	12A2p6	cell line	sgMsh2	106252195	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	168	0	0	NA	exonic	Fnd3c2	synonymous SNV	Fnd3c2:NM_001033424:exon2:c.T213C:p.N71N	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M5_p20	chrX	107871178	12A2p6	cell line	sgMsh2	107871178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	125	0	0	NA	exonic	Tent5d	nonsynonymous SNV	"Tent5d:NM_001163104:exon6:c.A865G:p.I289V,Tent5d:NM_001271008:exon6:c.A865G:p.I289V"	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	135	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	76	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	122396617	12A2p6	cell line	sgMsh2	122396617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	132	0	0	NA	exonic	Nap1l3	synonymous SNV	Nap1l3:NM_138742:exon1:c.T403C:p.L135L	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M5_p20	chrX	127721448	12A2p6	cell line	sgMsh2	127721448	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	70	0	0	NA	exonic	Cldn34c4	nonsynonymous SNV	Cldn34c4:NM_001281537:exon2:c.T398C:p.V133A	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	48	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M5_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	58	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	44	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	88	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	140427939	12A2p6	cell line	sgMsh2	140427939	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	53	0	0	NA	exonic	Frmpd3	synonymous SNV	Frmpd3:NM_001320946:exon14:c.C1788A:p.S596S	XqF1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCT	synonymous	NA	NA	NA	NA
M5_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	44	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M5_p20	chrX	150648889	12A2p6	cell line	sgMsh2	150648918	CCAAAGCCACCACTGGGATTGGATATGCCA	-	Deletion	Mutect2;Vardict	2	0.351	143	0	0	NA	exonic	Tro	nonframeshift deletion	"Tro:NM_001002272:exon12:c.3051_3080del:p.I1019_G1028del,Tro:NM_001290770:exon12:c.3051_3080del:p.I1019_G1028del"	XqF3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CCC	inframe	C	5	CCCCC	-30
M5_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	102	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	251	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	161178252	12A2p6	cell line	sgMsh2	161178252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.616	105	0	0	NA	exonic	Scml2	frameshift deletion	"Scml2:NM_001290651:exon4:c.309delT:p.L104Yfs*9,Scml2:NM_001290652:exon4:c.309delT:p.L104Yfs*9"	XqF4	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	ATT	frameshift	NA	NA	NA	-1
M5_p20	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	53	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrX	167729093	12A2p6	cell line	sgMsh2	167729093	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	114	0	0	NA	exonic	Frmpd4	synonymous SNV	"Frmpd4:NM_001359072:exon2:c.C75A:p.T25T,Frmpd4:NM_001368936:exon2:c.C84A:p.T28T,Frmpd4:NM_001290427:exon3:c.C60A:p.T20T,Frmpd4:NM_001369234:exon4:c.C138A:p.T46T,Frmpd4:NM_001033330:exon5:c.C60A:p.T20T"	XqF5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M5_p20	chrX	168796769	12A2p6	cell line	sgMsh2	168796769	A	G	SNV	Mutect2;MuSe;Vardict	3	0.294	24	0	0	NA	exonic	Arhgap6	synonymous SNV	Arhgap6:NM_009707:exon1:c.A549G:p.P183P	XqF5	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M5_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.54	134	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M5_p20	chrY	928352	12A2p6	cell line	sgMsh2	928352	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	92	0	0	NA	exonic	Kdm5d	synonymous SNV	Kdm5d:NM_011419:exon17:c.A2481G:p.Q827Q	YqA1	NA	NA	NA	NA	0.97	4.169990295	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M6	chr1	4347311	12A2p6	cell line	sgMsh2	4347311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	241	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.T3577C:p.C1193R	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.647478	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	4348716	12A2p6	cell line	sgMsh2	4348716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	154	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.A2172G:p.E724E	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999943	ATT	synonymous	NA	NA	NA	NA
M6	chr1	4349292	12A2p6	cell line	sgMsh2	4349292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	435	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G1596T:p.Q532H	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.9993426	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	4352795	12A2p6	cell line	sgMsh2	4352795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	120	0	0	NA	exonic	Rp1	nonsynonymous SNV	"Rp1:NM_001195662:exon2:c.A61G:p.M21V,Rp1:NM_001370921:exon2:c.A31G:p.M11V,Rp1:NM_011283:exon2:c.A31G:p.M11V"	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr1	5916369	12A2p6	cell line	sgMsh2	5916369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	120	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.T925C:p.Y309H	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999457	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	6249133	12A2p6	cell line	sgMsh2	6249133	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	166	114	20	0.175438596	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon15:c.G2775T:p.V925V	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999974	TGC	synonymous	NA	NA	NA	NA
M6	chr1	6802738	12A2p6	cell line	sgMsh2	6802738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	248	0	0	NA	exonic	St18	synonymous SNV	"St18:NM_173868:exon6:c.A696G:p.E232E,St18:NM_001244693:exon7:c.A696G:p.E232E,St18:NM_001244692:exon8:c.A696G:p.E232E"	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.999997	AAG	synonymous	NA	NA	NA	NA
M6	chr1	6855401	12A2p6	cell line	sgMsh2	6855401	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	264	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon20:c.G2782A:p.D928N,St18:NM_001244693:exon21:c.G2782A:p.D928N,St18:NM_001244692:exon22:c.G2782A:p.D928N"	1qA1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	5.01E-09	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	196	5	0	0	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	9745771	12A2p6	cell line	sgMsh2	9745771	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	258	97	4	0.041237113	exonic	Vcpip1	nonsynonymous SNV	Vcpip1:NM_173443:exon1:c.T2386C:p.F796L	1qA2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.00E-09	AAG	nonsynonymous	A	5	AAAAA	NA
M6	chr1	11231710	12A2p6	cell line	sgMsh2	11231710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	233	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon35:c.T4236C:p.Y1412Y	1qA2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
M6	chr1	12848408	12A2p6	cell line	sgMsh2	12848408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	154	0	0	NA	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.C2502T:p.C834C,Sulf1:NM_001198565:exon20:c.C2502T:p.C834C,Sulf1:NM_172294:exon20:c.C2502T:p.C834C"	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	GCC	synonymous	NA	NA	NA	NA
M6	chr1	12921116	12A2p6	cell line	sgMsh2	12921116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	158	0	0	NA	exonic	Slco5a1	nonsynonymous SNV	Slco5a1:NM_172841:exon4:c.A1348G:p.T450A	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9672837	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	15710517	12A2p6	cell line	sgMsh2	15710517	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	196	0	0	NA	exonic	Kcnb2	stopgain	Kcnb2:NM_001098528:exon3:c.C1612T:p.Q538X	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr1	15815963	12A2p6	cell line	sgMsh2	15815963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	205	34	3	0.088235294	exonic	Terf1	synonymous SNV	Terf1:NM_009352:exon4:c.A576G:p.E192E	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	AAT	synonymous	NA	NA	NA	NA
M6	chr1	16440421	12A2p6	cell line	sgMsh2	16440421	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	174	75	2	0.026666667	exonic	Stau2	synonymous SNV	"Stau2:NM_001111272:exon4:c.T216C:p.A72A,Stau2:NM_001347045:exon4:c.T216C:p.A72A,Stau2:NM_025303:exon5:c.T312C:p.A104A,Stau2:NM_001347044:exon7:c.T312C:p.A104A"	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999994	TAG	synonymous	NA	NA	NA	NA
M6	chr1	17621651	12A2p6	cell line	sgMsh2	17621651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	288	0	0	NA	exonic	Pi15	nonsynonymous SNV	Pi15:NM_053191:exon5:c.T563C:p.V188A	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	9.08E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	17747516	12A2p6	cell line	sgMsh2	17747516	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.224	138	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon6:c.C642T:p.G214G,Crispld1:NM_031402:exon6:c.C642T:p.G214G"	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999835	GCC	synonymous	NA	NA	NA	NA
M6	chr1	17752850	12A2p6	cell line	sgMsh2	17752850	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	157	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon11:c.T1140C:p.S380S,Crispld1:NM_031402:exon11:c.T1140C:p.S380S"	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9993512	CTG	synonymous	NA	NA	NA	NA
M6	chr1	17756262	12A2p6	cell line	sgMsh2	17756262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	162	0	0	NA	exonic	Crispld1	nonsynonymous SNV	"Crispld1:NM_001356551:exon13:c.T1249C:p.Y417H,Crispld1:NM_031402:exon13:c.T1249C:p.Y417H"	1qA3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9986908	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	20961291	12A2p6	cell line	sgMsh2	20961291	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	211	6	0	0	exonic	Efhc1	nonsynonymous SNV	Efhc1:NM_027974:exon4:c.T712G:p.F238V	1qA4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.5736242	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	21001577	12A2p6	cell line	sgMsh2	21001577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	123	12	2	0.166666667	exonic	Tram2	synonymous SNV	Tram2:NM_177409:exon11:c.A1098G:p.K366K	1qA4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	0.9942272	GTT	synonymous	NA	NA	NA	NA
M6	chr1	23378790	12A2p6	cell line	sgMsh2	23378790	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	219	9	1	0.111111111	exonic	Ogfrl1	synonymous SNV	"Ogfrl1:NM_001081079:exon3:c.C339T:p.I113I,Ogfrl1:NM_001379082:exon3:c.C342T:p.I114I,Ogfrl1:NM_001379083:exon3:c.C339T:p.I113I"	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	2.05E-08	GGA	synonymous	NA	NA	NA	NA
M6	chr1	24057380	12A2p6	cell line	sgMsh2	24057380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	234	96	6	0.0625	exonic	Fam135a	synonymous SNV	Fam135a:NM_026604:exon5:c.T283C:p.L95L	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999993	AAC	synonymous	NA	NA	NA	NA
M6	chr1	24322942	12A2p6	cell line	sgMsh2	24322942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	56	0	0	NA	exonic	Col19a1	synonymous SNV	Col19a1:NM_007733:exon25:c.A1749G:p.K583K	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	GTT	synonymous	NA	NA	NA	NA
M6	chr1	25117350	12A2p6	cell line	sgMsh2	25117350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	161	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon23:c.G3127A:p.V1043I	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr1	25228437	12A2p6	cell line	sgMsh2	25228437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	196	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon17:c.A2591G:p.Q864R	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	25547416	12A2p6	cell line	sgMsh2	25547416	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.109	48	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon5:c.G1195A:p.V399I	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	2	0.8270282	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	26682439	12A2p6	cell line	sgMsh2	26682439	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	344	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.G3659A:p.S1220N	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.98025	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	26683452	12A2p6	cell line	sgMsh2	26683452	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.14	193	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2646C:p.T882T	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.8178172	CTG	synonymous	CTGTA	10	CTGTACTGTA	NA
M6	chr1	26683454	12A2p6	cell line	sgMsh2	26683454	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.14	193	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2644T:p.T882S	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.8178172	GTA	nonsynonymous	CTGTA	10	CTGTACTGTA	NA
M6	chr1	26687339	12A2p6	cell line	sgMsh2	26687339	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	551	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G88A:p.A30T	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr1	28778215	12A2p6	cell line	sgMsh2	28778215	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	302	0	0	NA	exonic	Gm597	frameshift deletion	Gm597:NM_001013750:exon2:c.735delT:p.P246Hfs*2	1qA5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	48	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.000981406	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	55	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.8238673	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	32545434	12A2p6	cell line	sgMsh2	32545434	C	T	SNV	Mutect2;Vardict	2	0.018	508	0	0	NA	exonic	Gm5415	nonsynonymous SNV	Gm5415:NM_001164286:exon1:c.G1394A:p.R465K	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.096565704	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	33776997	12A2p6	cell line	sgMsh2	33776997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	130	43	6	0.139534884	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001290699:exon8:c.T1388C:p.M463T,Zfp451:NM_001359274:exon10:c.T1871C:p.M624T,Zfp451:NM_001359275:exon10:c.T1871C:p.M624T,Zfp451:NM_133817:exon10:c.T1871C:p.M624T"	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9994871	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	33883519	12A2p6	cell line	sgMsh2	33883519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	109	3	0	0	exonic	Bend6	synonymous SNV	Bend6:NM_177235:exon2:c.A42G:p.Q14Q	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.9951728	CTT	synonymous	NA	NA	NA	NA
M6	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	204	146	3	0.020547945	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M6	chr1	37232279	12A2p6	cell line	sgMsh2	37232279	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	193	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon2:c.C35T:p.S12F,Cnga3:NM_001282010:exon3:c.C35T:p.S12F"	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.43E-09	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr1	37431486	12A2p6	cell line	sgMsh2	37431486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	181	197	30	0.152284264	exonic	Unc50	nonsynonymous SNV	"Unc50:NM_001356528:exon2:c.T190C:p.Y64H,Unc50:NM_026123:exon2:c.T190C:p.Y64H"	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.999458	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	38088168	12A2p6	cell line	sgMsh2	38088168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	308	21	7	0.333333333	exonic	Rev1	nonsynonymous SNV	Rev1:NM_019570:exon6:c.T1010C:p.V337A	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.22E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	40111977	12A2p6	cell line	sgMsh2	40111977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	138	2	0	0	exonic	Il1r2	nonsynonymous SNV	"Il1r2:NM_001360801:exon3:c.A1G:p.M1V,Il1r2:NM_001360800:exon4:c.A445G:p.M149V,Il1r2:NM_010555:exon4:c.A391G:p.M131V"	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	40524327	12A2p6	cell line	sgMsh2	40524327	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	164	3	0	0	exonic	Il18rap	synonymous SNV	Il18rap:NM_010553:exon4:c.C15G:p.G5G	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.999081	GCT	synonymous	NA	NA	NA	NA
M6	chr1	40548690	12A2p6	cell line	sgMsh2	40548690	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	233	2	0	0	exonic	Il18rap	nonsynonymous SNV	Il18rap:NM_010553:exon13:c.A1447C:p.S483R	1qB	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	1.06E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	43934141	12A2p6	cell line	sgMsh2	43934141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	37	93	9	0.096774194	exonic	Tpp2	nonsynonymous SNV	"Tpp2:NM_001310540:exon1:c.A53G:p.K18R,Tpp2:NM_009418:exon1:c.A53G:p.K18R"	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9870974	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	43970423	12A2p6	cell line	sgMsh2	43970423	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	147	200	26	0.13	exonic	Tpp2	nonsynonymous SNV	"Tpp2:NM_001310540:exon12:c.C1416A:p.D472E,Tpp2:NM_009418:exon12:c.C1416A:p.D472E"	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9979702	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr1	44117219	12A2p6	cell line	sgMsh2	44117219	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	169	96	7	0.072916667	exonic	Poglut2	nonsynonymous SNV	Poglut2:NM_023645:exon2:c.G207T:p.K69N	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.06E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	44773286	12A2p6	cell line	sgMsh2	44773286	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	89	1	0	0	exonic	Gulp1	nonsynonymous SNV	Gulp1:NM_028450:exon7:c.T415G:p.L139V	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	9.60E-06	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	269	143	0	0	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	45822533	12A2p6	cell line	sgMsh2	45822533	A	-	Deletion	Mutect2;Vardict	2	0.041	182	132	0	0	exonic	Wdr75	frameshift deletion	Wdr75:NM_028599:exon19:c.2132delA:p.T712Lfs*10	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr1	46223106	12A2p6	cell line	sgMsh2	46223106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	304	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon37:c.A5996G:p.Y1999C	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.29E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	46234215	12A2p6	cell line	sgMsh2	46234215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	217	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.T7370C:p.L2457P	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9997382	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	46819099	12A2p6	cell line	sgMsh2	46819099	G	A	SNV	Mutect2;Vardict	2	0.031	181	92	3	0.032608696	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon7:c.C2037T:p.D679D,Slc39a10:NM_001356416:exon8:c.C2037T:p.D679D,Slc39a10:NM_001356417:exon8:c.C2037T:p.D679D"	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	CGT	synonymous	NA	NA	NA	NA
M6	chr1	46836054	12A2p6	cell line	sgMsh2	46836054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	236	166	39	0.234939759	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon2:c.T87C:p.H29H,Slc39a10:NM_001356416:exon3:c.T87C:p.H29H,Slc39a10:NM_001356417:exon3:c.T87C:p.H29H"	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9999986	CAT	synonymous	CATGGT	13	CATGGTCATGGTC	NA
M6	chr1	53299033	12A2p6	cell line	sgMsh2	53299033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	165	112	14	0.125	exonic	Ormdl1	nonsynonymous SNV	Ormdl1:NM_145517:exon2:c.A55G:p.S19G	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9997288	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	53348375	12A2p6	cell line	sgMsh2	53348375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	271	201	43	0.213930348	exonic	Asnsd1	nonsynonymous SNV	Asnsd1:NM_133728:exon4:c.G92A:p.G31D	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9956447	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Vardict	2	0.029	299	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Vardict	2	0.03	286	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr1	54486531	12A2p6	cell line	sgMsh2	54486531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	166	391	63	0.16112532	exonic	Pgap1	synonymous SNV	Pgap1:NM_001163314:exon25:c.T2464C:p.L822L	1qC1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9948204	AAG	synonymous	NA	NA	NA	NA
M6	chr1	54651725	12A2p6	cell line	sgMsh2	54651725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	322	21	1	0.047619048	exonic	Ankrd44	nonsynonymous SNV	Ankrd44:NM_001081433:exon27:c.T2867C:p.V956A	1qC1.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9606644	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	55078678	12A2p6	cell line	sgMsh2	55078678	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	264	56	0.212121212	exonic	Hspd1	nonsynonymous SNV	"Hspd1:NM_001356512:exon11:c.A1420T:p.I474F,Hspd1:NM_010477:exon11:c.A1420T:p.I474F"	1qC1.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	55079198	12A2p6	cell line	sgMsh2	55079198	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	182	1426	2	0.001402525	exonic	Hspd1	frameshift deletion	"Hspd1:NM_001356512:exon10:c.1248delG:p.D419Tfs*18,Hspd1:NM_010477:exon10:c.1248delG:p.D419Tfs*18"	1qC1.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	NA	NA	TCT	frameshift	T	6	TTTTTT	-1
M6	chr1	56871315	12A2p6	cell line	sgMsh2	56871315	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	258	6	0	0	exonic	Satb2	synonymous SNV	"Satb2:NM_139146:exon7:c.A1170C:p.T390T,Satb2:NM_001358580:exon8:c.A1170C:p.T390T,Satb2:NM_001358581:exon8:c.A1170C:p.T390T"	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	GTG	synonymous	NA	NA	NA	NA
M6	chr1	56891178	12A2p6	cell line	sgMsh2	56891178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	170	8	0	0	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.T685C:p.Y229H,Satb2:NM_001358580:exon7:c.T685C:p.Y229H,Satb2:NM_001358581:exon7:c.T685C:p.Y229H"	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.998964	TAC	nonsynonymous	T	5	TTTTT	NA
M6	chr1	56897988	12A2p6	cell line	sgMsh2	56897988	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	163	10	0	0	exonic	Satb2	synonymous SNV	"Satb2:NM_139146:exon5:c.A555G:p.E185E,Satb2:NM_001358580:exon6:c.A555G:p.E185E,Satb2:NM_001358581:exon6:c.A555G:p.E185E"	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.02E-09	TTT	synonymous	NA	NA	NA	NA
M6	chr1	57383382	12A2p6	cell line	sgMsh2	57383382	A	G	SNV	Mutect2;Vardict	2	0.037	284	22	2	0.090909091	exonic	1700066M21Rik	nonsynonymous SNV	1700066M21Rik:NM_028546:exon2:c.A916G:p.T306A	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	58015564	12A2p6	cell line	sgMsh2	58015564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	276	45	8	0.177777778	exonic	Sgo2a	synonymous SNV	"Sgo2a:NM_001177867:exon4:c.T606C:p.H202H,Sgo2a:NM_199007:exon7:c.T906C:p.H302H"	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	4.65E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr1	58016536	12A2p6	cell line	sgMsh2	58016536	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	177	80	13	0.1625	exonic	Sgo2a	synonymous SNV	"Sgo2a:NM_001177867:exon4:c.C1578A:p.P526P,Sgo2a:NM_199007:exon7:c.C1878A:p.P626P"	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	CCT	synonymous	NA	NA	NA	NA
M6	chr1	58062187	12A2p6	cell line	sgMsh2	58062187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	184	13	1	0.076923077	exonic	Aox1	nonsynonymous SNV	Aox1:NM_009676:exon14:c.T1316C:p.I439T	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9974124	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	58400838	12A2p6	cell line	sgMsh2	58400838	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	283	548	16	0.02919708	exonic	Bzw1	synonymous SNV	Bzw1:NM_025824:exon6:c.A534G:p.K178K	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr1	58404268	12A2p6	cell line	sgMsh2	58404268	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.187	178	772	124	0.160621762	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1142G:p.Y381C	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	58404270	12A2p6	cell line	sgMsh2	58404270	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.187	178	778	121	0.155526992	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1144G:p.K382E	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	58997406	12A2p6	cell line	sgMsh2	58997406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	321	0	0	NA	exonic	C2cd6	nonsynonymous SNV	C2cd6:NM_026600:exon19:c.A6706T:p.M2236L	1qC1.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9999778	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr1	59847167	12A2p6	cell line	sgMsh2	59847167	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	179	87	13	0.149425287	exonic	Bmpr2	nonsynonymous SNV	Bmpr2:NM_007561:exon7:c.G962A:p.R321Q	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.09159326	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr1	59867606	12A2p6	cell line	sgMsh2	59867606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	330	91	14	0.153846154	exonic	Bmpr2	synonymous SNV	Bmpr2:NM_007561:exon12:c.C1857T:p.G619G	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999999	GCC	synonymous	NA	NA	NA	NA
M6	chr1	60082077	12A2p6	cell line	sgMsh2	60082077	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	197	85	9	0.105882353	exonic	Wdr12	nonsynonymous SNV	"Wdr12:NM_021312:exon11:c.G1081T:p.G361C,Wdr12:NM_001199060:exon12:c.G1081T:p.G361C,Wdr12:NM_001199061:exon12:c.G1081T:p.G361C"	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr1	60200873	12A2p6	cell line	sgMsh2	60200873	A	-	Deletion	Strelka2;Vardict	2	0.1905	126	75	0	0	exonic	Nbeal1	frameshift deletion	Nbeal1:NM_173444:exon6:c.397delA:p.K135Rfs*14	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M6	chr1	60312190	12A2p6	cell line	sgMsh2	60312190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	316	109	18	0.165137615	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon50:c.A7346G:p.H2449R	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9999985	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	62159518	12A2p6	cell line	sgMsh2	62159518	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.242	151	7	0	0	exonic	Pard3b	frameshift insertion	Pard3b:NM_001081050:exon7:c.765dupA:p.I257Nfs*37	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GTA	frameshift	A	5	AAAAA	1
M6	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	211	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	CTG	nonsynonymous	G	5	GGGGG	NA
M6	chr1	62344084	12A2p6	cell line	sgMsh2	62344084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	53	4	0	0	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon17:c.A2336C:p.E779A	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.5224885	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	63748090	12A2p6	cell line	sgMsh2	63748090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	106	110	20	0.181818182	exonic	Fastkd2	nonsynonymous SNV	Fastkd2:NM_172422:exon9:c.T1682C:p.L561P	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9271892	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	65245796	12A2p6	cell line	sgMsh2	65245796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	187	43	5	0.11627907	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon19:c.T2418C:p.T806T,Pikfyve:NM_011086:exon19:c.T2283C:p.T761T"	1qC2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9996789	CTT	synonymous	NA	NA	NA	NA
M6	chr1	66483256	12A2p6	cell line	sgMsh2	66483256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	213	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon5:c.T616A:p.F206I,Unc80:NM_001368825:exon5:c.T616A:p.F206I,Unc80:NM_175510:exon5:c.T616A:p.F206I"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	2	0.9845927	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	66555061	12A2p6	cell line	sgMsh2	66555061	A	G	SNV	Mutect2;Vardict	2	0.027	288	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon22:c.A3604G:p.I1202V,Unc80:NM_001368825:exon22:c.A3604G:p.I1202V,Unc80:NM_175510:exon22:c.A3598G:p.I1200V"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	66590242	12A2p6	cell line	sgMsh2	66590242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	178	0	0	NA	exonic	Unc80	synonymous SNV	"Unc80:NM_001368824:exon24:c.T3903C:p.S1301S,Unc80:NM_001368825:exon24:c.T3903C:p.S1301S,Unc80:NM_175510:exon24:c.T3897C:p.S1299S"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9494966	GTC	synonymous	NA	NA	NA	NA
M6	chr1	68560548	12A2p6	cell line	sgMsh2	68560548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	184	0	0	NA	exonic	Erbb4	synonymous SNV	Erbb4:NM_010154:exon3:c.C369T:p.Y123Y	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	TGT	synonymous	NA	NA	NA	NA
M6	chr1	68560567	12A2p6	cell line	sgMsh2	68560567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	201	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon3:c.T350C:p.L117S	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	71559269	12A2p6	cell line	sgMsh2	71559269	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	135	164	23	0.140243902	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon3:c.C190T:p.R64C	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.7705875	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	136	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999987	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	74254915	12A2p6	cell line	sgMsh2	74254915	A	C	SNV	Mutect2;Vardict	2	0.034	263	2166	38	0.01754386	exonic	Arpc2	nonsynonymous SNV	"Arpc2:NM_029711:exon5:c.A356C:p.N119T,Arpc2:NM_001357387:exon6:c.A356C:p.N119T"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	74419626	12A2p6	cell line	sgMsh2	74419626	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	218	181	39	0.215469613	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon5:c.T405G:p.D135E	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr1	74426621	12A2p6	cell line	sgMsh2	74426621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	106	187	50	0.267379679	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon14:c.A1570G:p.N524D	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998631	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	153	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.999052	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	74565151	12A2p6	cell line	sgMsh2	74565151	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	281	1	0	0	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon15:c.T2191A:p.Y731N,Plcd4:NM_148937:exon16:c.T2287A:p.Y763N"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9996952	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	74575816	12A2p6	cell line	sgMsh2	74575816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	256	24	3	0.125	exonic	Zfp142	nonsynonymous SNV	"Zfp142:NM_001310668:exon5:c.A1837G:p.K613E,Zfp142:NM_029888:exon5:c.A1528G:p.K510E"	1qC3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9492381	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	220	15	3	0.2	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	75212610	12A2p6	cell line	sgMsh2	75212610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	147	191	19	0.09947644	exonic	Stk16	nonsynonymous SNV	"Stk16:NM_001277992:exon4:c.T317C:p.L106P,Stk16:NM_011494:exon4:c.T317C:p.L106P"	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	105	418	10	0.023923445	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	0.9999993	TAG	synonymous	NA	NA	NA	NA
M6	chr1	75217351	12A2p6	cell line	sgMsh2	75217351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	141	330	56	0.16969697	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.G87A:p.G29G	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	TCC	synonymous	NA	NA	NA	NA
M6	chr1	75315970	12A2p6	cell line	sgMsh2	75315970	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	150	278	57	0.205035971	exonic	Dnpep	nonsynonymous SNV	"Dnpep:NM_001110831:exon5:c.C404T:p.T135I,Dnpep:NM_016878:exon5:c.C398T:p.T133I"	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	GGT	nonsynonymous	AGGTC	10	AGGTCAGGTC	NA
M6	chr1	75429573	12A2p6	cell line	sgMsh2	75429573	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	74	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon36:c.A7118G:p.Q2373R,Speg:NM_007463:exon38:c.A9323G:p.Q3108R"	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	7.65E-07	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	75532489	12A2p6	cell line	sgMsh2	75532489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	225	31	3	0.096774194	exonic	Stk11ip	nonsynonymous SNV	Stk11ip:NM_027886:exon18:c.A2261G:p.D754G	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9999144	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	75556905	12A2p6	cell line	sgMsh2	75556905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	95	5	1	0.2	exonic	Slc4a3	nonsynonymous SNV	"Slc4a3:NM_001357149:exon20:c.T3170C:p.V1057A,Slc4a3:NM_001357150:exon20:c.T3170C:p.V1057A,Slc4a3:NM_009208:exon20:c.T3170C:p.V1057A"	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8737698	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	78817742	12A2p6	cell line	sgMsh2	78817742	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	100	0	0	NA	exonic	Kcne4	nonsynonymous SNV	Kcne4:NM_021342:exon2:c.T106A:p.Y36N	1qC4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.953407	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	81241326	12A2p6	cell line	sgMsh2	81241326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	0	0	NA	exonic	Nyap2	nonsynonymous SNV	"Nyap2:NM_001356397:exon4:c.A966G:p.I322M,Nyap2:NM_001356400:exon4:c.A966G:p.I322M,Nyap2:NM_001356398:exon5:c.A1062G:p.I354M,Nyap2:NM_001356399:exon5:c.A966G:p.I322M"	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999293	TAC	nonsynonymous	C	5	CCCCC	NA
M6	chr1	82287309	12A2p6	cell line	sgMsh2	82287309	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	91	25	0	0	exonic	Irs1	frameshift deletion	Irs1:NM_010570:exon1:c.3185delG:p.G1062Afs*1	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr1	82715280	12A2p6	cell line	sgMsh2	82715280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	86	11	0	0	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon48:c.A4285G:p.N1429D	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9991308	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	84395636	12A2p6	cell line	sgMsh2	84395636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	207	0	0	NA	exonic	Dner	nonsynonymous SNV	Dner:NM_152915:exon11:c.G1834A:p.V612M	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ACC	nonsynonymous	CCCA	8	CCCACCCA	NA
M6	chr1	84585349	12A2p6	cell line	sgMsh2	84585349	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.159	180	0	0	NA	exonic	Dner	synonymous SNV	Dner:NM_152915:exon2:c.G549A:p.G183G	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9925541	GCC	synonymous	NA	NA	NA	NA
M6	chr1	84757751	12A2p6	cell line	sgMsh2	84757751	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.126	141	290	49	0.168965517	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon18:c.G2724T:p.K908N	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9844154	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	84766032	12A2p6	cell line	sgMsh2	84766032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	183	259	42	0.162162162	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon10:c.T1553C:p.L518P	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9990152	GAG	nonsynonymous	G	5	GGGGG	NA
M6	chr1	85723148	12A2p6	cell line	sgMsh2	85723148	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	275	0	0	NA	exonic	A630001G21Rik	nonsynonymous SNV	A630001G21Rik:NM_177055:exon4:c.A359C:p.K120T	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9997746	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	86130678	12A2p6	cell line	sgMsh2	86130678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	239	244	28	0.114754098	exonic	Psmd1	synonymous SNV	Psmd1:NM_027357:exon21:c.A2430G:p.T810T	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9898816	CAT	synonymous	NA	NA	NA	NA
M6	chr1	86133737	12A2p6	cell line	sgMsh2	86133737	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.052	152	284	0	0	exonic	Psmd1	frameshift deletion	Psmd1:NM_027357:exon23:c.2668delA:p.K890Rfs*2	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr1	87099527	12A2p6	cell line	sgMsh2	87099527	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	176	0	0	NA	exonic	Alpi	synonymous SNV	Alpi:NM_001081082:exon9:c.A1029C:p.T343T	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999971	CTG	synonymous	NA	NA	NA	NA
M6	chr1	87264656	12A2p6	cell line	sgMsh2	87264656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	32	0	0	NA	exonic	Efhd1	synonymous SNV	Efhd1:NM_028889:exon1:c.T207C:p.G69G	1qC5	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9620869	GTA	synonymous	NA	NA	NA	NA
M6	chr1	87918689	12A2p6	cell line	sgMsh2	87918689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	100	83	5	0.060240964	exonic	Dgkd	synonymous SNV	Dgkd:NM_177646:exon9:c.T1053C:p.V351V	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	TTT	synonymous	T	5	TTTTT	NA
M6	chr1	87949990	12A2p6	cell line	sgMsh2	87949990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	440	47	7	0.14893617	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon26:c.A3176G:p.Q1059R,Usp40:NM_001198573:exon30:c.A3443G:p.Q1148R"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	8.24E-09	TTG	nonsynonymous	T	5	TTTTT	NA
M6	chr1	88212249	12A2p6	cell line	sgMsh2	88212249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	1077	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.T248C:p.V83A	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	88247214	12A2p6	cell line	sgMsh2	88247214	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	942	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon25:c.A2715G:p.Q905Q	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1	AAC	synonymous	C	5	CCCCC	NA
M6	chr1	88254870	12A2p6	cell line	sgMsh2	88254870	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	439	1	0	0	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon32:c.G3510T:p.E1170D	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	88255099	12A2p6	cell line	sgMsh2	88255099	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	414	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.A3667G:p.T1223A	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	88277237	12A2p6	cell line	sgMsh2	88277238	TT	CC	DBS	Mutect2;Vardict	2	0.044	349	121	3	0.024793388	exonic	A730008H23Rik;Hjurp	nonframeshift substitution	"A730008H23Rik:NM_172505:exon2:c.144_145GG:p.T49A,Hjurp:NM_198652:exon2:c.144_145GG:p.T49A"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	88277396	12A2p6	cell line	sgMsh2	88277396	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	177	86	2	0.023255814	exonic	A730008H23Rik;Hjurp	nonsynonymous SNV	"A730008H23Rik:NM_172505:exon1:c.T74C:p.L25S,Hjurp:NM_198652:exon1:c.T74C:p.L25S"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.01E-09	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	89145723	12A2p6	cell line	sgMsh2	89145723	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	95	122	29	0.237704918	exonic	Sh3bp4	synonymous SNV	Sh3bp4:NM_133816:exon4:c.C2292T:p.N764N	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	ACA	synonymous	NA	NA	NA	NA
M6	chr1	89152266	12A2p6	cell line	sgMsh2	89152266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	132	134	23	0.171641791	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon5:c.A2542G:p.T848A	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	89968262	12A2p6	cell line	sgMsh2	89968262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	80	0	0	NA	exonic	Asb18	nonsynonymous SNV	"Asb18:NM_001355134:exon3:c.T932C:p.V311A,Asb18:NM_139152:exon4:c.T1055C:p.V352A"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9618061	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	90807774	12A2p6	cell line	sgMsh2	90807774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	131	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon6:c.C2152T:p.L718L,Col6a3:NM_001243008:exon9:c.C3973T:p.L1325L"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9867734	AGT	synonymous	NA	NA	NA	NA
M6	chr1	90822219	12A2p6	cell line	sgMsh2	90822219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	131	0	0	NA	exonic	Col6a3	nonsynonymous SNV	Col6a3:NM_001243008:exon4:c.T892C:p.Y298H	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.5737974	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	91420472	12A2p6	cell line	sgMsh2	91420472	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	140	12	2	0.166666667	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon21:c.A3407T:p.D1136V	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999855	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	91431044	12A2p6	cell line	sgMsh2	91431044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	117	10	0	0	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon15:c.A1718C:p.E573A	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9998325	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	91435706	12A2p6	cell line	sgMsh2	91435706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	56	4	2	0.5	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon10:c.T1091C:p.V364A	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.7704507	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	92888774	12A2p6	cell line	sgMsh2	92888774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	108	0	0	NA	exonic	Ankmy1	nonsynonymous SNV	"Ankmy1:NM_001347091:exon5:c.C617T:p.P206L,Ankmy1:NM_172850:exon5:c.C617T:p.P206L"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Vardict	2	0.04	130	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	2.94E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	93310192	12A2p6	cell line	sgMsh2	93310192	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	102	4	1	0.25	exonic	Pask	nonsynonymous SNV	Pask:NM_080850:exon18:c.T4052C:p.M1351T	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8277857	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	257	165	0	0	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	AAG	synonymous	NA	NA	NA	NA
M6	chr1	93425296	12A2p6	cell line	sgMsh2	93425296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	120	1057	163	0.154210028	exonic	Hdlbp	nonsynonymous SNV	"Hdlbp:NM_001301364:exon12:c.C1483T:p.R495W,Hdlbp:NM_001357556:exon12:c.C1483T:p.R495W,Hdlbp:NM_133808:exon12:c.C1483T:p.R495W"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr1	93500465	12A2p6	cell line	sgMsh2	93500465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	193	758	72	0.094986807	exonic	Septin2	nonsynonymous SNV	"Septin2:NM_001159718:exon7:c.A482G:p.D161G,Septin2:NM_001159717:exon8:c.A602G:p.D201G,Septin2:NM_001159719:exon8:c.A602G:p.D201G,Septin2:NM_010891:exon8:c.A602G:p.D201G"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9475189	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	94024961	12A2p6	cell line	sgMsh2	94024961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	0	0	NA	exonic	Neu4	synonymous SNV	"Neu4:NM_173772:exon4:c.T982C:p.L328L,Neu4:NM_001310769:exon5:c.T1051C:p.L351L"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999993	GTT	synonymous	NA	NA	NA	NA
M6	chr1	98466696	12A2p6	cell line	sgMsh2	98466696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	168	0	0	NA	exonic	Slco6d1	synonymous SNV	"Slco6d1:NM_001164233:exon7:c.A1104G:p.V368V,Slco6d1:NM_027584:exon7:c.A1104G:p.V368V"	1qD	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	TAT	synonymous	NA	NA	NA	NA
M6	chr1	99967371	12A2p6	cell line	sgMsh2	99967371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	218	0	0	NA	exonic	Cntnap5b	stopgain	Cntnap5b:NM_172851:exon3:c.G367T:p.G123X	1qE1.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.9386221	AGG	nonsynonymous	CAAG	8	CAAGCAAG	NA
M6	chr1	104979041	12A2p6	cell line	sgMsh2	104979041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	332	0	0	NA	exonic	Cdh20	nonsynonymous SNV	Cdh20:NM_011800:exon10:c.A1592G:p.Y531C	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9999701	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	107515526	12A2p6	cell line	sgMsh2	107515526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	150	0	0	NA	exonic	Serpinb2	synonymous SNV	"Serpinb2:NM_001174170:exon2:c.G54A:p.Q18Q,Serpinb2:NM_011111:exon2:c.G54A:p.Q18Q"	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.5833062	AGA	synonymous	NA	NA	NA	NA
M6	chr1	110908178	12A2p6	cell line	sgMsh2	110908178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	212	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon9:c.A1333G:p.N445D,Cdh19:NM_001356415:exon10:c.A1333G:p.N445D"	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9891338	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	110925087	12A2p6	cell line	sgMsh2	110925087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	227	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon7:c.T1117A:p.Y373N,Cdh19:NM_001356415:exon8:c.T1117A:p.Y373N"	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.9999971	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	111859904	12A2p6	cell line	sgMsh2	111859904	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	271	4	0	0	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.G2900A:p.S967N	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9520834	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr1	111861067	12A2p6	cell line	sgMsh2	111861067	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	211	0	0	NA	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.C1737T:p.V579V	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999003	CGA	synonymous	NA	NA	NA	NA
M6	chr1	111861569	12A2p6	cell line	sgMsh2	111861569	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	192	2	0	0	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.T1235A:p.V412D	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9994558	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	111862676	12A2p6	cell line	sgMsh2	111862676	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	279	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.A128G:p.K43R	1qE2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9999943	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	116089370	12A2p6	cell line	sgMsh2	116089370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	226	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon5:c.T692C:p.L231P,Cntnap5a:NM_001371013:exon5:c.T692C:p.L231P"	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	5.04E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	119527237	12A2p6	cell line	sgMsh2	119527237	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	210	120	28	0.233333333	exonic	Tmem185b	nonsynonymous SNV	Tmem185b:NM_146103:exon1:c.T727C:p.Y243H	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	120067734	12A2p6	cell line	sgMsh2	120067734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	120	7	1	0.142857143	exonic	Tmem37	synonymous SNV	Tmem37:NM_019432:exon2:c.T612C:p.G204G	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9305203	AAC	synonymous	NA	NA	NA	NA
M6	chr1	121306909	12A2p6	cell line	sgMsh2	121306909	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	172	198	26	0.131313131	exonic	Insig2	frameshift deletion	"Insig2:NM_001271532:exon4:c.267delT:p.F89Lfs*4,Insig2:NM_001271531:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_001357251:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_133748:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_178082:exon5:c.591delT:p.F197Lfs*4"	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr1	123367622	12A2p6	cell line	sgMsh2	123367622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	69	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon19:c.A1688C:p.N563T	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9983436	GTT	nonsynonymous	T	5	TTTTT	NA
M6	chr1	123445299	12A2p6	cell line	sgMsh2	123445299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	132	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon8:c.T611C:p.I204T	1qE2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999754	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	127551395	12A2p6	cell line	sgMsh2	127551395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	130	18	5	0.277777778	exonic	Tmem163	nonsynonymous SNV	Tmem163:NM_028135:exon4:c.T386C:p.L129P	1qE3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	181	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	3.89E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	128328161	12A2p6	cell line	sgMsh2	128328161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	125	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon1:c.C143T:p.P48L	1qE3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.665230404	2	0.9803767	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.025	314	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	3	1	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	130841561	12A2p6	cell line	sgMsh2	130841561	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	93	0	0	NA	exonic	Pigr	synonymous SNV	Pigr:NM_011082:exon3:c.T108C:p.V36V	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.6210567	TTT	synonymous	NA	NA	NA	NA
M6	chr1	131275839	12A2p6	cell line	sgMsh2	131275839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	77	29	7	0.24137931	exonic	Ikbke	synonymous SNV	Ikbke:NM_019777:exon4:c.G96T:p.G32G	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9985104	CCC	synonymous	NA	NA	NA	NA
M6	chr1	132023625	12A2p6	cell line	sgMsh2	132023625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	76	14	0.184210526	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376959:exon4:c.T397A:p.F133I,Elk4:NM_001376954:exon5:c.T1267A:p.F423I,Elk4:NM_001376955:exon5:c.T1267A:p.F423I,Elk4:NM_001376956:exon5:c.T1267A:p.F423I,Elk4:NM_007923:exon5:c.T1267A:p.F423I,Elk4:NM_001376957:exon6:c.T1267A:p.F423I,Elk4:NM_001376958:exon6:c.T1267A:p.F423I"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9998659	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	133639049	12A2p6	cell line	sgMsh2	133639049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	236	331	49	0.148036254	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon6:c.G493A:p.D165N,Zc3h11a:NM_144530:exon6:c.G493A:p.D165N,Zc3h11a:NM_001276767:exon7:c.G493A:p.D165N"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9997703	TCT	nonsynonymous	TCA	17	TCATCTTCATCATCATC	NA
M6	chr1	133657321	12A2p6	cell line	sgMsh2	133657321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	220	118	14	0.118644068	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T2277C:p.S759S	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M6	chr1	133658840	12A2p6	cell line	sgMsh2	133658840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	259	164	25	0.152439024	exonic	Zbed6	nonsynonymous SNV	Zbed6:NM_001166552:exon1:c.A758C:p.N253T	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999811	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	133729924	12A2p6	cell line	sgMsh2	133729924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	143	14	0	0	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon11:c.A1827G:p.E609E,Atp2b4:NM_213616:exon11:c.A1827G:p.E609E"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	CTT	synonymous	TCCT	9	TCCTTCCTT	NA
M6	chr1	133739185	12A2p6	cell line	sgMsh2	133739185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	16	3	0.1875	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon3:c.A627G:p.G209G,Atp2b4:NM_213616:exon3:c.A627G:p.G209G"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	CTC	synonymous	NA	NA	NA	NA
M6	chr1	133903690	12A2p6	cell line	sgMsh2	133903690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	233	0	0	NA	exonic	Optc	synonymous SNV	"Optc:NM_001160421:exon3:c.A477G:p.V159V,Optc:NM_001160422:exon3:c.A477G:p.V159V,Optc:NM_054076:exon3:c.A477G:p.V159V,Optc:NM_001160420:exon4:c.A477G:p.V159V"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8285399	GTA	synonymous	NA	NA	NA	NA
M6	chr1	134203040	12A2p6	cell line	sgMsh2	134203040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	215	49	8	0.163265306	exonic	Adora1	nonsynonymous SNV	"Adora1:NM_001008533:exon2:c.A892G:p.T298A,Adora1:NM_001291928:exon2:c.A622G:p.T208A,Adora1:NM_001291930:exon2:c.A466G:p.T156A,Adora1:NM_001039510:exon3:c.A892G:p.T298A,Adora1:NM_001282945:exon3:c.A892G:p.T298A"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	134300497	12A2p6	cell line	sgMsh2	134300497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	186	2	1	0.5	exonic	Ppfia4	synonymous SNV	"Ppfia4:NM_001144855:exon26:c.C3300A:p.A1100A,Ppfia4:NM_001374777:exon27:c.C3300A:p.A1100A"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9975239	AGG	synonymous	NA	NA	NA	NA
M6	chr1	134355657	12A2p6	cell line	sgMsh2	134355657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	126	218	29	0.133027523	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon4:c.T424C:p.Y142H,Tmem183a:NM_020588:exon4:c.T427C:p.Y143H"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9998436	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	135167045	12A2p6	cell line	sgMsh2	135167045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	152	0	0	NA	exonic	Gpr37l1	nonsynonymous SNV	Gpr37l1:NM_134438:exon1:c.A460G:p.I154V	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999927	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr1	135167376	12A2p6	cell line	sgMsh2	135167376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	62	0	0	NA	exonic	Gpr37l1	synonymous SNV	Gpr37l1:NM_134438:exon1:c.A129C:p.R43R	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9963477	GTC	synonymous	NA	NA	NA	NA
M6	chr1	135309143	12A2p6	cell line	sgMsh2	135309143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	201	299	36	0.120401338	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon3:c.A116G:p.Q39R,Timm17a:NM_011590:exon3:c.A182G:p.Q61R"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9974454	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	135405832	12A2p6	cell line	sgMsh2	135405832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	161	281	47	0.167259786	exonic	Ipo9	nonsynonymous SNV	"Ipo9:NM_153774:exon10:c.A1111G:p.T371A,Ipo9:NM_001357575:exon11:c.A1003G:p.T335A,Ipo9:NM_001357576:exon11:c.A658G:p.T220A,Ipo9:NM_001357578:exon11:c.A265G:p.T89A,Ipo9:NM_001357577:exon12:c.A658G:p.T220A"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999964	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	136118373	12A2p6	cell line	sgMsh2	136118373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	215	0	0	NA	exonic	Cacna1s	nonsynonymous SNV	"Cacna1s:NM_014193:exon41:c.A5115T:p.R1705S,Cacna1s:NM_001081023:exon42:c.A5172T:p.R1724S"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.6075544	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	136153261	12A2p6	cell line	sgMsh2	136153261	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	70	29	8	0.275862069	exonic	Kif21b	synonymous SNV	Kif21b:NM_001039472:exon13:c.G1839T:p.S613S	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.8242095	CGG	synonymous	NA	NA	NA	NA
M6	chr1	136165026	12A2p6	cell line	sgMsh2	136165026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	179	27	7	0.259259259	exonic	Kif21b	nonsynonymous SNV	Kif21b:NM_001039472:exon27:c.A3704C:p.D1235A	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9730157	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	136625870	12A2p6	cell line	sgMsh2	136625870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	168	30	4	0.133333333	exonic	Zfp281	synonymous SNV	"Zfp281:NM_001160251:exon2:c.A585G:p.L195L,Zfp281:NM_177643:exon2:c.A585G:p.L195L"	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9877484	TAC	synonymous	NA	NA	NA	NA
M6	chr1	139236840	12A2p6	cell line	sgMsh2	139236840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	122	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon9:c.T3728C:p.F1243S	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9923973	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	139423488	12A2p6	cell line	sgMsh2	139423488	A	G	SNV	Mutect2;Vardict	2	0.029	225	60	6	0.1	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon2:c.A338G:p.Y113C	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	139478372	12A2p6	cell line	sgMsh2	139478372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	239	17	2	0.117647059	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T4996C:p.Y1666H	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.19E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	139478536	12A2p6	cell line	sgMsh2	139478536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	190	12	3	0.25	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon18:c.T5160C:p.C1720C	1qE4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.8941574	GTA	synonymous	NA	NA	NA	NA
M6	chr1	139492825	12A2p6	cell line	sgMsh2	139492825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	143	36	7	0.194444444	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon27:c.T9215C:p.V3072A	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9970495	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	139698220	12A2p6	cell line	sgMsh2	139698220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	152	0	0	NA	exonic	Gm4788	nonsynonymous SNV	"Gm4788:NM_001160304:exon14:c.A2338G:p.I780V,Gm4788:NM_001029977:exon15:c.A2515G:p.I839V,Gm4788:NM_001160303:exon15:c.A2512G:p.I838V"	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9654403	ATA	nonsynonymous	AATA	8	AATAAATA	NA
M6	chr1	139733178	12A2p6	cell line	sgMsh2	139733178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	235	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon11:c.1771delA:p.R591Gfs*31,Gm4788:NM_001160303:exon11:c.1768delA:p.R590Gfs*31,Gm4788:NM_001160304:exon11:c.1771delA:p.R591Gfs*31"	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Vardict	2	0.025	274	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Vardict	2	0.032	335	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	TAT	synonymous	NA	NA	NA	NA
M6	chr1	140246265	12A2p6	cell line	sgMsh2	140246265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	130	0	0	NA	exonic	Kcnt2	synonymous SNV	Kcnt2:NM_001081027:exon1:c.T9C:p.D3D	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	ATT	synonymous	NA	NA	NA	NA
M6	chr1	140484198	12A2p6	cell line	sgMsh2	140484198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	248	0	0	NA	exonic	Kcnt2	synonymous SNV	Kcnt2:NM_001081027:exon14:c.A1368G:p.T456T	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9993812	CAC	synonymous	NA	NA	NA	NA
M6	chr1	140484217	12A2p6	cell line	sgMsh2	140484217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	200	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon14:c.C1387T:p.H463Y	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.632525	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr1	140518870	12A2p6	cell line	sgMsh2	140518870	G	A	SNV	Mutect2;Vardict	2	0.029	244	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon18:c.G2002A:p.A668T	1qF	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr1	149857649	12A2p6	cell line	sgMsh2	149857649	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	179	119	17	0.142857143	exonic	Pla2g4a	nonsynonymous SNV	"Pla2g4a:NM_001305632:exon13:c.A1348C:p.S450R,Pla2g4a:NM_008869:exon14:c.A1372C:p.S458R"	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9997809	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	150104474	12A2p6	cell line	sgMsh2	150104474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	169	60	6	0.1	exonic	Ptgs2	nonsynonymous SNV	Ptgs2:NM_011198:exon8:c.T1162C:p.Y388H	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9704193	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	150333395	12A2p6	cell line	sgMsh2	150333395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	171	0	0	NA	exonic	Pdc	nonsynonymous SNV	"Pdc:NM_001159730:exon4:c.T628C:p.F210L,Pdc:NM_024458:exon4:c.T628C:p.F210L"	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.6759009	ATT	nonsynonymous	T	5	TTTTT	NA
M6	chr1	150428159	12A2p6	cell line	sgMsh2	150428159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	231	262	50	0.190839695	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon31:c.T4282C:p.Y1428H	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	150573530	12A2p6	cell line	sgMsh2	150573530	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.187	220	0	0	NA	exonic	Hmcn1	stopgain	Hmcn1:NM_001024720:exon105:c.C16357T:p.Q5453X	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	150573532	12A2p6	cell line	sgMsh2	150573532	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.187	220	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon105:c.A16355T:p.Y5452F	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	150652555	12A2p6	cell line	sgMsh2	150652555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	266	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon64:c.A9841G:p.R3281G	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.9233968	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	150686813	12A2p6	cell line	sgMsh2	150686813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	266	0	0	NA	exonic	Hmcn1	frameshift deletion	Hmcn1:NM_001024720:exon45:c.6993delC:p.L2332fs*0	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6	chr1	150723488	12A2p6	cell line	sgMsh2	150723488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	131	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon31:c.T4676C:p.L1559S	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8474018	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	239	411	15	0.03649635	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	151411279	12A2p6	cell line	sgMsh2	151411279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	123	54	4	0.074074074	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon6:c.T461G:p.I154S	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999241	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	151420172	12A2p6	cell line	sgMsh2	151420172	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	85	53	4	0.075471698	exonic	Swt1	synonymous SNV	Swt1:NM_025819:exon4:c.G153A:p.K51K	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9932326	CCT	synonymous	T	5	TTTTT	NA
M6	chr1	151453933	12A2p6	cell line	sgMsh2	151453933	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	221	120	24	0.2	exonic	Trmt1l	nonsynonymous SNV	"Trmt1l:NM_001357569:exon12:c.A1626T:p.E542D,Trmt1l:NM_001357570:exon12:c.A822T:p.E274D,Trmt1l:NM_026876:exon12:c.A1626T:p.E542D"	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	0.9817685	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	151717587	12A2p6	cell line	sgMsh2	151717587	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	55	46	10	0.217391304	exonic	Niban1	nonsynonymous SNV	Niban1:NM_022018:exon14:c.G2022T:p.E674D	1qG1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9960359	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	153154408	12A2p6	cell line	sgMsh2	153154408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	191	423	84	0.19858156	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon5:c.G487A:p.G163R	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9797035	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr1	153230850	12A2p6	cell line	sgMsh2	153230850	T	A	SNV	Mutect2;MuSe;Vardict	3	0.304	24	271	39	0.143911439	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3715T:p.N1239Y	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	9.78E-06	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	153433241	12A2p6	cell line	sgMsh2	153433241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	208	0	0	NA	exonic	Shcbp1l	nonsynonymous SNV	Shcbp1l:NM_001033162:exon3:c.T580C:p.F194L	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.02E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	153807711	12A2p6	cell line	sgMsh2	153807711	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	123	0	0	NA	exonic	Rgsl1	nonsynonymous SNV	"Rgsl1:NM_001243223:exon11:c.A2092G:p.K698E,Rgsl1:NM_001368270:exon12:c.A2197G:p.K733E"	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9833696	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	314	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Vardict	2	0.042	126	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	0.9999999	AAG	nonsynonymous	A	5	AAAAA	NA
M6	chr1	155129292	12A2p6	cell line	sgMsh2	155129292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	239	17	3	0.176470588	exonic	Mr1	nonsynonymous SNV	"Mr1:NM_001355062:exon6:c.T788C:p.V263A,Mr1:NM_001355063:exon6:c.T665C:p.V222A,Mr1:NM_008209:exon6:c.T1001C:p.V334A"	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9951639	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	155146647	12A2p6	cell line	sgMsh2	155146647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	166	13	0	0	exonic	Mr1	nonsynonymous SNV	Mr1:NM_008209:exon1:c.A40C:p.K14Q	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9959931	TTC	nonsynonymous	GCTTC	10	GCTTCGCTTC	NA
M6	chr1	155217499	12A2p6	cell line	sgMsh2	155217499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	85	0	0	NA	exonic	BC034090	nonsynonymous SNV	BC034090:NM_001370865:exon9:c.A3298G:p.T1100A	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9989246	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	155330376	12A2p6	cell line	sgMsh2	155330376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	205	85	13	0.152941176	exonic	Xpr1	nonsynonymous SNV	Xpr1:NM_011273:exon5:c.A559G:p.T187A	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9928938	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	155933429	12A2p6	cell line	sgMsh2	155933429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	113	53	14	0.264150943	exonic	Cep350	nonsynonymous SNV	Cep350:NM_001039184:exon10:c.A1400G:p.E467G	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.6726775	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	155959745	12A2p6	cell line	sgMsh2	155959745	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.206	345	37	7	0.189189189	exonic	Cep350	synonymous SNV	Cep350:NM_001039184:exon4:c.T204C:p.S68S	1qG3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.02E-09	CAC	synonymous	NA	NA	NA	NA
M6	chr1	158295509	12A2p6	cell line	sgMsh2	158295509	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	107	0	0	NA	exonic	Brinp2	synonymous SNV	Brinp2:NM_207583:exon2:c.A186G:p.R62R	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999862	CTC	synonymous	NA	NA	NA	NA
M6	chr1	158295517	12A2p6	cell line	sgMsh2	158295517	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	101	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon2:c.A178G:p.T60A	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999312	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	158572975	12A2p6	cell line	sgMsh2	158572975	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	251	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon9:c.A1571G:p.Q524R,Astn1:NM_007495:exon9:c.A1547G:p.Q516R"	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-08	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	158657301	12A2p6	cell line	sgMsh2	158657301	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	72	0	0	NA	exonic	Astn1	frameshift deletion	"Astn1:NM_001205204:exon17:c.2957delC:p.Q987Rfs*8,Astn1:NM_007495:exon17:c.2933delC:p.Q979Rfs*8"	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	NA	NA	ACC	frameshift	NA	NA	NA	-1
M6	chr1	158717047	12A2p6	cell line	sgMsh2	158717047	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	136	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon22:c.A5210G:p.D1737G	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9494758	ATC	nonsynonymous	ACCA	8	ACCAACCA	NA
M6	chr1	158848221	12A2p6	cell line	sgMsh2	158848221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	202	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon8:c.T2954C:p.I985T	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9376186	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	158936779	12A2p6	cell line	sgMsh2	158936779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	159	0	0	NA	exonic	Pappa2	synonymous SNV	Pappa2:NM_001085376:exon3:c.T1161C:p.A387A	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9998555	TAG	synonymous	NA	NA	NA	NA
M6	chr1	159278090	12A2p6	cell line	sgMsh2	159278090	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	264	50	14	0.28	exonic	Cop1	nonsynonymous SNV	"Cop1:NM_001360878:exon9:c.A964T:p.S322C,Cop1:NM_011931:exon9:c.A976T:p.S326C"	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9999996	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	159851961	12A2p6	cell line	sgMsh2	159851961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	126	0	0	NA	exonic	Tnr	synonymous SNV	Tnr:NM_022312:exon4:c.A504G:p.Q168Q	1qH1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9970114	AAC	synonymous	NA	NA	NA	NA
M6	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	235	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	161157126	12A2p6	cell line	sgMsh2	161157126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	371	0	0	NA	exonic	Tex50	synonymous SNV	Tex50:NM_001195189:exon2:c.T543C:p.T181T	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	4.59E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	35	53	1	0.018867925	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	1	0.5799898	AAG	synonymous	NA	NA	NA	NA
M6	chr1	161970451	12A2p6	cell line	sgMsh2	161970451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	205	90	10	0.111111111	exonic	Pigc	nonsynonymous SNV	"Pigc:NM_001039045:exon2:c.A1G:p.M1V,Pigc:NM_026078:exon2:c.A1G:p.M1V"	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	162545775	12A2p6	cell line	sgMsh2	162545775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	141	28	4	0.142857143	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T906C:p.I302I	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999864	AAA	synonymous	NA	NA	NA	NA
M6	chr1	162546462	12A2p6	cell line	sgMsh2	162546462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	235	60	9	0.15	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T219C:p.D73D	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.83E-08	TAT	synonymous	NA	NA	NA	NA
M6	chr1	162794363	12A2p6	cell line	sgMsh2	162794363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	153	1	0	0	exonic	Fmo4	synonymous SNV	Fmo4:NM_144878:exon9:c.A1278G:p.K426K	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9911504	GTT	synonymous	NA	NA	NA	NA
M6	chr1	162955215	12A2p6	cell line	sgMsh2	162955215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	348	0	0	NA	exonic	Fmo3	nonsynonymous SNV	Fmo3:NM_008030:exon8:c.A1232C:p.E411A	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9995439	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr1	163952152	12A2p6	cell line	sgMsh2	163952152	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	102	41	16	0.390243902	exonic	Scyl3	nonsynonymous SNV	"Scyl3:NM_001286002:exon13:c.A1648C:p.T550P,Scyl3:NM_001286003:exon13:c.A1003C:p.T335P,Scyl3:NM_001357426:exon13:c.A1003C:p.T335P,Scyl3:NM_028776:exon13:c.A1687C:p.T563P"	1qH2.1	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	1	0.5247112	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	164217413	12A2p6	cell line	sgMsh2	164217413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	171	5	0	0	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon24:c.A6269G:p.K2090R	1qH2.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999981	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	165336829	12A2p6	cell line	sgMsh2	165336829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	128	91	11	0.120879121	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon17:c.A2376G:p.L792L	1qH2.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9997198	CTA	synonymous	NA	NA	NA	NA
M6	chr1	165351045	12A2p6	cell line	sgMsh2	165351045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	218	100	19	0.19	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon14:c.T1914C:p.H638H	1qH2.2	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TAT	synonymous	NA	NA	NA	NA
M6	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	178	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9702319	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	165551108	12A2p6	cell line	sgMsh2	165551108	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	161	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon20:c.T977C:p.M326T,Adcy10:NM_173029:exon20:c.T2465C:p.M822T"	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.92E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr1	165576619	12A2p6	cell line	sgMsh2	165576619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	98	0	0	NA	exonic	Adcy10	synonymous SNV	"Adcy10:NM_001357427:exon34:c.A3354G:p.A1118A,Adcy10:NM_173029:exon34:c.A4842G:p.A1614A"	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9217275	CAT	synonymous	NA	NA	NA	NA
M6	chr1	165875869	12A2p6	cell line	sgMsh2	165875869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	178	19	4	0.210526316	exonic	Pou2f1	nonsynonymous SNV	"Pou2f1:NM_198932:exon16:c.G2179T:p.G727W,Pou2f1:NM_198933:exon16:c.G2146T:p.G716W,Pou2f1:NM_001368808:exon17:c.G2182T:p.G728W,Pou2f1:NM_011137:exon17:c.G2251T:p.G751W,Pou2f1:NM_198934:exon17:c.G2218T:p.G740W"	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999975	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	112	19	2	0.105263158	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	0.9999996	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr1	167229990	12A2p6	cell line	sgMsh2	167229990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	105	219	38	0.173515982	exonic	Uck2	nonsynonymous SNV	Uck2:NM_030724:exon5:c.T500C:p.V167A	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	167846641	12A2p6	cell line	sgMsh2	167846641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	195	0	0	NA	exonic	Lmx1a	synonymous SNV	Lmx1a:NM_033652:exon8:c.A1029G:p.T343T	1qH2.3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CAT	synonymous	NA	NA	NA	NA
M6	chr1	169998156	12A2p6	cell line	sgMsh2	169998156	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	99	1	0	0	exonic	Ddr2	nonsynonymous SNV	Ddr2:NM_022563:exon8:c.T874C:p.F292L	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9986098	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	170867653	12A2p6	cell line	sgMsh2	170867653	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	80	49	10	0.204081633	exonic	Atf6	nonsynonymous SNV	Atf6:NM_001081304:exon1:c.T49A:p.W17R	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9992375	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr1	170907874	12A2p6	cell line	sgMsh2	170907874	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	31	0	0	NA	exonic	Fcrlb	nonsynonymous SNV	Fcrlb:NM_001029984:exon5:c.C830A:p.P277Q	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9583526	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	170912927	12A2p6	cell line	sgMsh2	170912927	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	177	0	0	NA	exonic	Fcrlb	synonymous SNV	Fcrlb:NM_001029984:exon1:c.A15T:p.A5A	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.9999945	CTG	synonymous	NA	NA	NA	NA
M6	chr1	171054004	12A2p6	cell line	sgMsh2	171054004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	322	6	0	0	exonic	Fcgr3	nonsynonymous SNV	"Fcgr3:NM_001356511:exon4:c.A551G:p.Y184C,Fcgr3:NM_010188:exon4:c.A554G:p.Y185C"	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	2.12E-09	GTA	nonsynonymous	AGT	9	AGTAGTAGT	NA
M6	chr1	171236387	12A2p6	cell line	sgMsh2	171236387	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	125	392	32	0.081632653	exonic	Ndufs2	stopgain	Ndufs2:NM_153064:exon11:c.T1266A:p.C422X	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.999961	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	245	53	22	0.41509434	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.51E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	171641143	12A2p6	cell line	sgMsh2	171641143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	192	0	0	NA	exonic	Slamf7	synonymous SNV	"Slamf7:NM_001347184:exon2:c.T180C:p.L60L,Slamf7:NM_144539:exon3:c.T180C:p.L60L"	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.579394223	2	0.9999965	CAA	synonymous	AAGA	9	AAGAAAGAA	NA
M6	chr1	171641147	12A2p6	cell line	sgMsh2	171641147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	192	0	0	NA	exonic	Slamf7	nonsynonymous SNV	"Slamf7:NM_001347184:exon2:c.T176C:p.F59S,Slamf7:NM_144539:exon3:c.T176C:p.F59S"	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9999992	AAA	nonsynonymous	AAGA	9	AAGAAAGAA	NA
M6	chr1	172119922	12A2p6	cell line	sgMsh2	172119922	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	161	569	81	0.142355009	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon31:c.A3304C:p.I1102L	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9579013	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	172165917	12A2p6	cell line	sgMsh2	172165917	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	222	201	9	0.044776119	exonic	Dcaf8	synonymous SNV	"Dcaf8:NM_001357204:exon3:c.T51C:p.N17N,Dcaf8:NM_153555:exon3:c.T51C:p.N17N"	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr1	172172887	12A2p6	cell line	sgMsh2	172172887	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	160	209	37	0.177033493	exonic	Dcaf8	nonsynonymous SNV	"Dcaf8:NM_001357204:exon4:c.G611A:p.S204N,Dcaf8:NM_153555:exon4:c.G611A:p.S204N"	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9757307	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr1	172244047	12A2p6	cell line	sgMsh2	172244047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	112	0	0	NA	exonic	Atp1a4	nonsynonymous SNV	Atp1a4:NM_013734:exon11:c.A1480T:p.N494Y	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9990798	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr1	172290712	12A2p6	cell line	sgMsh2	172290712	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	181	0	0	NA	exonic	Atp1a2	nonsynonymous SNV	Atp1a2:NM_178405:exon5:c.A394T:p.I132F	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999235	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	172584444	12A2p6	cell line	sgMsh2	172584444	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.191	176	0	0	NA	exonic	Slamf8	nonsynonymous SNV	Slamf8:NM_029084:exon3:c.T563C:p.L188P	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	CAG	nonsynonymous	CCCAGT	12	CCCAGTCCCAGT	NA
M6	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	401	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr1	173203457	12A2p6	cell line	sgMsh2	173203457	A	C	SNV	Mutect2;Vardict	2	0.023	240	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.A100C:p.T34P	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	173215653	12A2p6	cell line	sgMsh2	173215653	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	202	0	0	NA	exonic	Olfr1404	nonsynonymous SNV	Olfr1404:NM_146881:exon1:c.A1G:p.M1V	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Strelka2;Vardict	2	0.189	328	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr1	173638983	12A2p6	cell line	sgMsh2	173638983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	90	0	0	NA	exonic	Ifi209	nonsynonymous SNV	Ifi209:NM_175026:exon3:c.G380A:p.R127K	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9995054	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	174028199	12A2p6	cell line	sgMsh2	174028199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	162	1	0	0	exonic	Ifi205	synonymous SNV	Ifi205:NM_172648:exon2:c.A264G:p.E88E	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999606	CTT	synonymous	NA	NA	NA	NA
M6	chr1	174250568	12A2p6	cell line	sgMsh2	174250568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.T358C:p.F120L	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999934	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	174836908	12A2p6	cell line	sgMsh2	174836908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	103	0	0	NA	exonic	Grem2	nonsynonymous SNV	Grem2:NM_011825:exon2:c.C374T:p.P125L	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9986147	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	175705958	12A2p6	cell line	sgMsh2	175705958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	145	0	0	NA	exonic	Wdr64	synonymous SNV	Wdr64:NM_029453:exon2:c.T159C:p.Y53Y	1qH3	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.6569324	ATG	synonymous	NA	NA	NA	NA
M6	chr1	175899449	12A2p6	cell line	sgMsh2	175899449	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	179	38	0	0	exonic	Exo1	frameshift deletion	Exo1:NM_012012:exon11:c.1325delA:p.N443Mfs*34	1qH4	chr1-3216742-176140308	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr1	176274706	12A2p6	cell line	sgMsh2	176274706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	54	0	0	NA	exonic	Pld5	nonsynonymous SNV	Pld5:NM_176916:exon1:c.A169G:p.R57G	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9957663	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	177752925	12A2p6	cell line	sgMsh2	177752925	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	228	68	13	0.191176471	exonic	1700016C15Rik	nonsynonymous SNV	1700016C15Rik:NM_027077:exon5:c.G335A:p.R112Q	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.43E-08	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	179423384	12A2p6	cell line	sgMsh2	179423384	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	398	45	1	0.022222222	exonic	Smyd3	nonsynonymous SNV	Smyd3:NM_027188:exon2:c.A199G:p.I67V	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	179529275	12A2p6	cell line	sgMsh2	179529275	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	37	2	1	0.5	exonic	Tfb2m	nonsynonymous SNV	"Tfb2m:NM_001331054:exon7:c.C1030A:p.P344T,Tfb2m:NM_001331055:exon7:c.C679A:p.P227T,Tfb2m:NM_008249:exon8:c.C1093A:p.P365T"	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9870974	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	111	95	10	0.105263158	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999803	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr1	180067347	12A2p6	cell line	sgMsh2	180067347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	260	62	9	0.14516129	exonic	Cdc42bpa	nonsynonymous SNV	"Cdc42bpa:NM_001033285:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346804:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346805:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359541:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359542:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359543:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359544:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359545:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359546:exon9:c.G884A:p.S295N,Cdc42bpa:NM_001359547:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359548:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359549:exon9:c.G779A:p.S260N"	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	6.23E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr1	180144741	12A2p6	cell line	sgMsh2	180144741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	176	48	11	0.229166667	exonic	Cdc42bpa	synonymous SNV	"Cdc42bpa:NM_001346805:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001359544:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001346804:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359541:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359545:exon29:c.T4008C:p.S1336S,Cdc42bpa:NM_001033285:exon30:c.T4107C:p.S1369S,Cdc42bpa:NM_001359543:exon30:c.T4116C:p.S1372S,Cdc42bpa:NM_001359549:exon30:c.T3696C:p.S1232S,Cdc42bpa:NM_001359542:exon31:c.T4155C:p.S1385S,Cdc42bpa:NM_001359546:exon31:c.T3900C:p.S1300S,Cdc42bpa:NM_001359548:exon31:c.T3804C:p.S1268S,Cdc42bpa:NM_001359547:exon32:c.T3843C:p.S1281S"	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	GTG	synonymous	NA	NA	NA	NA
M6	chr1	180965639	12A2p6	cell line	sgMsh2	180965639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	128	85	19	0.223529412	exonic	Tmem63a	nonsynonymous SNV	Tmem63a:NM_144794:exon15:c.T1474C:p.W492R	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr1	180974268	12A2p6	cell line	sgMsh2	180974268	A	G	SNV	Mutect2;Vardict	2	0.038	107	67	3	0.044776119	exonic	Tmem63a	nonsynonymous SNV	Tmem63a:NM_144794:exon23:c.A2347G:p.T783A	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	181054895	12A2p6	cell line	sgMsh2	181054895	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	198	0	0	NA	exonic	9130409I23Rik	frameshift deletion	9130409I23Rik:NM_001033819:exon2:c.221delA:p.Y74Lfs*10	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAT	frameshift	NA	NA	NA	-1
M6	chr1	181211090	12A2p6	cell line	sgMsh2	181211090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	62	201	47	0.233830846	exonic	Wdr26	synonymous SNV	Wdr26:NM_145514:exon1:c.T348C:p.N116N	1qH4	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.8792156	CAT	synonymous	NA	NA	NA	NA
M6	chr1	181816916	12A2p6	cell line	sgMsh2	181816916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	118	131	29	0.221374046	exonic	Lbr	nonsynonymous SNV	Lbr:NM_133815:exon14:c.T1823C:p.L608P	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	CAG	nonsynonymous	CCAGG	12	CCAGGCCAGGCC	NA
M6	chr1	182973202	12A2p6	cell line	sgMsh2	182973202	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	122	1	0	0	exonic	Tlr5	nonsynonymous SNV	Tlr5:NM_016928:exon4:c.G70T:p.G24C	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.963252	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr1	184944834	12A2p6	cell line	sgMsh2	184944834	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	189	0	0	NA	exonic	Mark1	nonsynonymous SNV	"Mark1:NM_001378876:exon2:c.A218G:p.K73R,Mark1:NM_145515:exon2:c.A218G:p.K73R"	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr1	185258613	12A2p6	cell line	sgMsh2	185258613	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	142	63	8	0.126984127	exonic	Rab3gap2	synonymous SNV	Rab3gap2:NM_001163754:exon19:c.G1983A:p.P661P	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999873	CGT	synonymous	NA	NA	NA	NA
M6	chr1	186625518	12A2p6	cell line	sgMsh2	186625518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	130	2	0	0	exonic	Tgfb2	nonsynonymous SNV	"Tgfb2:NM_009367:exon7:c.A1175G:p.Y392C,Tgfb2:NM_001329107:exon8:c.A1259G:p.Y420C"	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999719	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr1	188066447	12A2p6	cell line	sgMsh2	188066447	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	100	0	0	NA	exonic	Esrrg	nonsynonymous SNV	"Esrrg:NM_011935:exon3:c.G579A:p.M193I,Esrrg:NM_001243792:exon4:c.G510A:p.M170I,Esrrg:NM_001357534:exon4:c.G510A:p.M170I,Esrrg:NM_001357535:exon4:c.G510A:p.M170I,Esrrg:NM_001357536:exon4:c.G528A:p.M176I"	1qH5	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	122	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999928	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr1	188948540	12A2p6	cell line	sgMsh2	188948540	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon66:c.A14714T:p.E4905V	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9911947	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr1	191013388	12A2p6	cell line	sgMsh2	191013388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	136	18	1	0.055555556	exonic	Flvcr1	synonymous SNV	"Flvcr1:NM_001313747:exon3:c.T645C:p.N215N,Flvcr1:NM_001081259:exon4:c.T1083C:p.N361N"	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	GAT	synonymous	NA	NA	NA	NA
M6	chr1	191058906	12A2p6	cell line	sgMsh2	191058906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	133	17	3	0.176470588	exonic	Tatdn3	nonsynonymous SNV	"Tatdn3:NM_001163421:exon4:c.A170G:p.N57S,Tatdn3:NM_001163422:exon4:c.A170G:p.N57S,Tatdn3:NM_001357166:exon4:c.A170G:p.N57S,Tatdn3:NM_026895:exon4:c.A170G:p.N57S"	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9961199	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2394	71	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M6	chr1	191164343	12A2p6	cell line	sgMsh2	191164343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	229	0	0	NA	exonic	Fam71a	synonymous SNV	Fam71a:NM_001109759:exon1:c.A102G:p.L34L	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.15E-08	GTA	synonymous	CTG	9	CTGCTGCTG	NA
M6	chr1	191356936	12A2p6	cell line	sgMsh2	191356936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	255	99	14	0.141414141	exonic	Ppp2r5a	nonsynonymous SNV	Ppp2r5a:NM_144880:exon7:c.T824C:p.V275A	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.6515575	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	192846378	12A2p6	cell line	sgMsh2	192846378	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	129	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.A1129T:p.M377L,Sertad4:NM_198247:exon4:c.A1129T:p.M377L"	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr1	193240306	12A2p6	cell line	sgMsh2	193240306	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	167	0	0	NA	exonic	Hsd11b1	nonsynonymous SNV	"Hsd11b1:NM_001044751:exon4:c.G442A:p.V148M,Hsd11b1:NM_008288:exon5:c.G442A:p.V148M"	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9998258	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr1	194780562	12A2p6	cell line	sgMsh2	194780562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	118	18	3	0.166666667	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon13:c.A2636G:p.H879R	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999938	CAT	nonsynonymous	CCAT	8	CCATCCAT	NA
M6	chr1	194796987	12A2p6	cell line	sgMsh2	194796987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	152	44	8	0.181818182	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon21:c.A3955G:p.T1319A	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr1	194806431	12A2p6	cell line	sgMsh2	194806431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	71	42	11	0.261904762	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon28:c.A5014G:p.M1672V	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9913383	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr1	194812106	12A2p6	cell line	sgMsh2	194812106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	101	49	13	0.265306122	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon32:c.A5630G:p.Q1877R	1qH6	chr1-176213282-195166209	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr10	3919204	12A2p6	cell line	sgMsh2	3919204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	269	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon4:c.A578G:p.K193R,Plekhg1:NM_001159942:exon5:c.A578G:p.K193R"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.88E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	4418620	12A2p6	cell line	sgMsh2	4418620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	292	6	1	0.166666667	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon5:c.A628G:p.I210V,Rmnd1:NM_001358796:exon6:c.A628G:p.I210V"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.63E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Vardict	2	0.036	115	25	1	0.04	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	4.25E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	4512797	12A2p6	cell line	sgMsh2	4512797	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	132	0	0	NA	exonic	Ccdc170	nonsynonymous SNV	"Ccdc170:NM_001195672:exon2:c.C94G:p.L32V,Ccdc170:NM_001370992:exon2:c.C112G:p.L38V,Ccdc170:NM_001370993:exon2:c.C112G:p.L38V"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	5022126	12A2p6	cell line	sgMsh2	5022126	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	74	18	5	0.277777778	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon17:c.A2731T:p.I911F,Syne1:NM_001079686:exon55:c.A8914T:p.I2972F,Syne1:NM_001347711:exon146:c.A26317T:p.I8773F,Syne1:NM_001347732:exon146:c.A26281T:p.I8761F"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr10	5204117	12A2p6	cell line	sgMsh2	5204117	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	72	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon89:c.C17122A:p.L5708M,Syne1:NM_001347732:exon89:c.C17101A:p.L5701M"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	5270944	12A2p6	cell line	sgMsh2	5270944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	84	4	1	0.25	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon58:c.A9355G:p.M3119V,Syne1:NM_001347732:exon58:c.A9334G:p.M3112V"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9828755	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	168	2	1	0.5	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	5799603	12A2p6	cell line	sgMsh2	5799603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	87	50	9	0.18	exonic	Fbxo5	nonsynonymous SNV	Fbxo5:NM_025995:exon5:c.A1234G:p.K412E	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	TTA	nonsynonymous	T	5	TTTTT	NA
M6	chr10	6890590	12A2p6	cell line	sgMsh2	6890590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	100	2	0	0	exonic	Ipcef1	nonsynonymous SNV	"Ipcef1:NM_001170800:exon9:c.T1106C:p.M369T,Ipcef1:NM_001347225:exon9:c.T1118C:p.M373T"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.5563739	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	8741496	12A2p6	cell line	sgMsh2	8741496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	61	55	9	0.163636364	exonic	Sash1	nonsynonymous SNV	Sash1:NM_175155:exon14:c.T1645A:p.C549S	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9973297	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	10689376	12A2p6	cell line	sgMsh2	10689376	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	49	0	0	NA	exonic	Grm1	nonsynonymous SNV	Grm1:NM_016976:exon9:c.A3187T:p.T1063S	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	11160485	12A2p6	cell line	sgMsh2	11160485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	107	33	4	0.121212121	exonic	Shprh	synonymous SNV	"Shprh:NM_001077707:exon6:c.A1065G:p.P355P,Shprh:NM_001284354:exon6:c.A1065G:p.P355P,Shprh:NM_172937:exon6:c.A1065G:p.P355P"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9921041	CAC	synonymous	NA	NA	NA	NA
M6	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	199	35	2	0.057142857	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.02E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	203	54	2	0.037037037	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	12421645	12A2p6	cell line	sgMsh2	12421645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	179	127	21	0.165354331	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon65:c.T9440G:p.L3147R	10qA1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	12941485	12A2p6	cell line	sgMsh2	12941485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	149	16	1	0.0625	exonic	Stx11	nonsynonymous SNV	"Stx11:NM_001163590:exon2:c.T494C:p.L165P,Stx11:NM_001163591:exon2:c.T494C:p.L165P,Stx11:NM_029075:exon3:c.T494C:p.L165P"	10qA2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Vardict	2	0.031	149	13	2	0.153846154	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.03E-09	CGC	synonymous	NA	NA	NA	NA
M6	chr10	18473025	12A2p6	cell line	sgMsh2	18473025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	141	23	5	0.217391304	exonic	Nhsl1	nonsynonymous SNV	"Nhsl1:NM_001163592:exon2:c.G165T:p.E55D,Nhsl1:NM_173390:exon2:c.G309T:p.E103D"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9998852	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	66	13	3	0.230769231	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9980794	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	20357669	12A2p6	cell line	sgMsh2	20357669	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	138	13	3	0.230769231	exonic	Mtfr2	nonsynonymous SNV	Mtfr2:NM_027930:exon6:c.A983C:p.N328T	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8758398	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	21072555	12A2p6	cell line	sgMsh2	21072555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	86	9	0	0	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001177776:exon5:c.A277G:p.K93E,Ahi1:NM_001358561:exon21:c.A2965G:p.K989E,Ahi1:NM_026203:exon22:c.A2992G:p.K998E"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9860245	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr10	21074448	12A2p6	cell line	sgMsh2	21074448	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	75	7	1	0.142857143	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001177776:exon6:c.C397T:p.P133S,Ahi1:NM_001358561:exon22:c.C3085T:p.P1029S,Ahi1:NM_026203:exon23:c.C3112T:p.P1038S"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9989393	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	21156376	12A2p6	cell line	sgMsh2	21156376	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	0	0	NA	exonic	Myb	synonymous SNV	"Myb:NM_001198914:exon2:c.G105A:p.K35K,Myb:NM_010848:exon2:c.G105A:p.K35K"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	GCT	synonymous	NA	NA	NA	NA
M6	chr10	21382316	12A2p6	cell line	sgMsh2	21382316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	88	0	0	NA	exonic	Aldh8a1	nonsynonymous SNV	Aldh8a1:NM_178713:exon3:c.C311T:p.T104I	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr10	23157368	12A2p6	cell line	sgMsh2	23157368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	105	0	0	NA	exonic	Eya4	nonsynonymous SNV	"Eya4:NM_001347372:exon8:c.A539G:p.K180R,Eya4:NM_010167:exon8:c.A539G:p.K180R"	10qA3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	95	640	160	0.25	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997168	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr10	24596360	12A2p6	cell line	sgMsh2	24596360	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	83	250	60	0.24	exonic	Ccn2	synonymous SNV	Ccn2:NM_010217:exon3:c.A300G:p.A100A	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	CAC	synonymous	NA	NA	NA	NA
M6	chr10	24596386	12A2p6	cell line	sgMsh2	24596386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	82	336	93	0.276785714	exonic	Ccn2	nonsynonymous SNV	Ccn2:NM_010217:exon3:c.A326G:p.Y109C	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	97	352	10	0.028409091	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.5546803	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	99	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9983649	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	28465801	12A2p6	cell line	sgMsh2	28465801	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	168	218	32	0.146788991	exonic	Ptprk	nonsynonymous SNV	"Ptprk:NM_001359355:exon8:c.G1203T:p.Q401H,Ptprk:NM_001359356:exon8:c.G1203T:p.Q401H,Ptprk:NM_008983:exon8:c.G1203T:p.Q401H"	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	28587027	12A2p6	cell line	sgMsh2	28587027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	88	210	50	0.238095238	exonic	Ptprk	synonymous SNV	"Ptprk:NM_001359356:exon26:c.T3672C:p.F1224F,Ptprk:NM_008983:exon27:c.T3708C:p.F1236F,Ptprk:NM_001359355:exon29:c.T3750C:p.F1250F"	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.7469963	TTT	synonymous	T	5	TTTTT	NA
M6	chr10	29224559	12A2p6	cell line	sgMsh2	29224559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	155	13	2	0.153846154	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon5:c.A927G:p.Q309Q	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9998699	AAG	synonymous	NA	NA	NA	NA
M6	chr10	29227239	12A2p6	cell line	sgMsh2	29227239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	53	2	0	0	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon6:c.A1815G:p.K605K	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9954785	AAG	synonymous	NA	NA	NA	NA
M6	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Vardict	2	0.063	157	52	0	0	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr10	31534870	12A2p6	cell line	sgMsh2	31534870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	81	17	0.209876543	exonic	Rnf217	synonymous SNV	Rnf217:NM_001146349:exon2:c.A828G:p.K276K	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999939	ATT	synonymous	NA	NA	NA	NA
M6	chr10	33186688	12A2p6	cell line	sgMsh2	33186688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	0	0	NA	exonic	Trdn	nonsynonymous SNV	"Trdn:NM_001364696:exon7:c.A598G:p.M200V,Trdn:NM_001364697:exon7:c.A598G:p.M200V,Trdn:NM_029726:exon7:c.A598G:p.M200V"	10qA4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	33930261	12A2p6	cell line	sgMsh2	33930261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	166	19	3	0.157894737	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon7:c.T1042C:p.F348L,Zup1:NM_001359456:exon7:c.T1042C:p.F348L,Zup1:NM_028287:exon7:c.T1042C:p.F348L"	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999974	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	34411414	12A2p6	cell line	sgMsh2	34411414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	87	40	5	0.125	exonic	Nt5dc1	nonsynonymous SNV	Nt5dc1:NM_176968:exon2:c.T139C:p.Y47H	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	39082766	12A2p6	cell line	sgMsh2	39082766	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	83	0	0	NA	exonic	Lama4	frameshift deletion	Lama4:NM_010681:exon26:c.3581delG:p.C1196fs*0	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Vardict	2	0.03	177	30	3	0.1	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1.00E-09	CCT	synonymous	NA	NA	NA	NA
M6	chr10	40003010	12A2p6	cell line	sgMsh2	40003010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	349	0	0	NA	exonic	Mfsd4b1	nonsynonymous SNV	Mfsd4b1:NM_144821:exon4:c.T890C:p.I297T	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	6.41E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	40254307	12A2p6	cell line	sgMsh2	40254307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	152	218	41	0.188073394	exonic	Gtf3c6	synonymous SNV	"Gtf3c6:NM_001359491:exon4:c.T231C:p.D77D,Gtf3c6:NM_001359492:exon4:c.T42C:p.D14D,Gtf3c6:NM_001359493:exon4:c.T42C:p.D14D,Gtf3c6:NM_026113:exon4:c.T228C:p.D76D"	10qB1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	TAT	synonymous	NA	NA	NA	NA
M6	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	141	45	11	0.244444444	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9380524	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	42274939	12A2p6	cell line	sgMsh2	42274939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	90	21	9	0.428571429	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon2:c.C495T:p.I165I,Foxo3:NM_019740:exon2:c.C495T:p.I165I"	10qB2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9988876	TGA	synonymous	NA	NA	NA	NA
M6	chr10	44441731	12A2p6	cell line	sgMsh2	44441731	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.C1095G:p.G365G	10qB2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	GGC	synonymous	NA	NA	NA	NA
M6	chr10	49132856	12A2p6	cell line	sgMsh2	49132856	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	159	0	0	NA	exonic	Grik2	synonymous SNV	"Grik2:NM_001111268:exon15:c.A2134C:p.R712R,Grik2:NM_001358866:exon15:c.A2134C:p.R712R,Grik2:NM_010349:exon15:c.A2134C:p.R712R"	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	CTG	synonymous	CTG	8	CTGCTGCT	NA
M6	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	150	52	8	0.153846154	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	79	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.6407827	TAC	synonymous	NA	NA	NA	NA
M6	chr10	53021917	12A2p6	cell line	sgMsh2	53021917	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	103	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon3:c.A423C:p.E141D	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	53319635	12A2p6	cell line	sgMsh2	53319635	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.203	104	4	0	0	exonic	Cep85l	frameshift insertion	Cep85l:NM_001204983:exon4:c.1104dupA:p.E369Rfs*11	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TCT	frameshift	NA	NA	NA	1
M6	chr10	53541605	12A2p6	cell line	sgMsh2	53541605	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	215	7	0	0	exonic	Mcm9	nonsynonymous SNV	Mcm9:NM_027830:exon11:c.A1747G:p.M583V	10qB3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr10	57512133	12A2p6	cell line	sgMsh2	57512133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	56	7	0.125	exonic	Hsf2	nonsynonymous SNV	Hsf2:NM_008297:exon12:c.C1489T:p.L497F	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr10	57512156	12A2p6	cell line	sgMsh2	57512156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	161	64	13	0.203125	exonic	Hsf2	synonymous SNV	Hsf2:NM_008297:exon12:c.T1512C:p.A504A	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	CTC	synonymous	NA	NA	NA	NA
M6	chr10	57523171	12A2p6	cell line	sgMsh2	57523171	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	181	606	164	0.270627063	exonic	Serinc1	nonsynonymous SNV	Serinc1:NM_019760:exon6:c.C635T:p.A212V	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	58476919	12A2p6	cell line	sgMsh2	58476919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	232	178	37	0.207865169	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.A3460G:p.S1154G	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	4.03E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	58479591	12A2p6	cell line	sgMsh2	58479591	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	201	209	9	0.043062201	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A6132G:p.S2044S	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999824	CAG	synonymous	NA	NA	NA	NA
M6	chr10	59049580	12A2p6	cell line	sgMsh2	59049580	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	51	0	0	NA	exonic	Sh3rf3	nonsynonymous SNV	Sh3rf3:NM_172788:exon4:c.G1284T:p.Q428H	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	AGG	nonsynonymous	CCCA	8	CCCACCCA	NA
M6	chr10	60773801	12A2p6	cell line	sgMsh2	60773801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	125	169	44	0.26035503	exonic	Unc5b	nonsynonymous SNV	"Unc5b:NM_001359273:exon10:c.T1682G:p.I561S,Unc5b:NM_029770:exon11:c.T1715G:p.I572S"	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	61672432	12A2p6	cell line	sgMsh2	61672432	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	188	142	4	0.028169014	exonic	Ppa1	synonymous SNV	Ppa1:NM_026438:exon10:c.T837C:p.D279D	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999996	ATG	synonymous	NA	NA	NA	NA
M6	chr10	62252883	12A2p6	cell line	sgMsh2	62252883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	49	0	0	NA	exonic	Tacr2	synonymous SNV	Tacr2:NM_009314:exon1:c.C66T:p.G22G	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	GCG	synonymous	NA	NA	NA	NA
M6	chr10	62563277	12A2p6	cell line	sgMsh2	62563277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	152	69	13	0.188405797	exonic	Kifbp	nonsynonymous SNV	Kifbp:NM_028197:exon6:c.T937C:p.Y313H	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	62664112	12A2p6	cell line	sgMsh2	62664112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	157	0	0	NA	exonic	Stox1	nonsynonymous SNV	Stox1:NM_001033260:exon3:c.A2668G:p.S890G	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	227	27	4	0.148148148	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	63246002	12A2p6	cell line	sgMsh2	63246002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	105	73	13	0.178082192	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_001359484:exon3:c.A103G:p.K35E,Herc4:NM_026101:exon3:c.A103G:p.K35E,Herc4:NM_030114:exon3:c.A103G:p.K35E"	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9942747	AAA	nonsynonymous	A	5	AAAAA	NA
M6	chr10	64088725	12A2p6	cell line	sgMsh2	64088725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	109	0	0	NA	exonic	Lrrtm3	nonsynonymous SNV	Lrrtm3:NM_178678:exon2:c.A662G:p.N221S	10qB4	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9998521	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	67021863	12A2p6	cell line	sgMsh2	67021863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	101	130	23	0.176923077	exonic	Reep3	nonsynonymous SNV	"Reep3:NM_001204915:exon6:c.A448G:p.S150G,Reep3:NM_178606:exon6:c.A448G:p.S150G"	10qB5.1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9995754	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	67219678	12A2p6	cell line	sgMsh2	67219678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	165	55	11	0.2	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1194C:p.N398N,Jmjd1c:NM_207221:exon8:c.T1737C:p.N579N"	10qB5.1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999972	ATG	synonymous	NA	NA	NA	NA
M6	chr10	69340868	12A2p6	cell line	sgMsh2	69340868	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	107	187	33	0.176470588	exonic	Cdk1	nonsynonymous SNV	Cdk1:NM_007659:exon6:c.T500C:p.L167P	10qB5.3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	69808417	12A2p6	cell line	sgMsh2	69808417	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	149	10	2	0.2	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon2:c.C65T:p.S22F,Ank3:NM_170688:exon2:c.C65T:p.S22F,Ank3:NM_170689:exon2:c.C65T:p.S22F,Ank3:NM_170690:exon2:c.C65T:p.S22F,Ank3:NM_170728:exon2:c.C65T:p.S22F,Ank3:NM_170729:exon2:c.C65T:p.S22F"	10qB5.3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9950047	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	74290972	12A2p6	cell line	sgMsh2	74290972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	293	0	0	NA	exonic	Pcdh15	synonymous SNV	"Pcdh15:NM_001142738:exon8:c.A771G:p.E257E,Pcdh15:NM_001142736:exon9:c.A882G:p.E294E,Pcdh15:NM_001142740:exon9:c.A882G:p.E294E,Pcdh15:NM_001142743:exon9:c.A882G:p.E294E,Pcdh15:NM_001142748:exon9:c.A882G:p.E294E,Pcdh15:NM_001142747:exon10:c.A897G:p.E299E"	10qB5.3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.59E-09	AAC	synonymous	NA	NA	NA	NA
M6	chr10	75061795	12A2p6	cell line	sgMsh2	75061795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	74	100	3	0.03	exonic	Bcr	nonsynonymous SNV	Bcr:NM_001081412:exon1:c.T770C:p.L257P	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.982742	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	75263363	12A2p6	cell line	sgMsh2	75263363	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	151	54	6	0.111111111	exonic	Specc1l	nonsynonymous SNV	"Specc1l:NM_153406:exon9:c.C2648A:p.P883H,Specc1l:NM_001145826:exon12:c.C2699A:p.P900H"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9993914	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	75585276	12A2p6	cell line	sgMsh2	75585276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	112	0	0	NA	exonic	Ggt1	nonsynonymous SNV	"Ggt1:NM_008116:exon10:c.A1324G:p.I442V,Ggt1:NM_001305992:exon11:c.A1324G:p.I442V,Ggt1:NM_001379540:exon11:c.A1324G:p.I442V,Ggt1:NM_001379541:exon11:c.A1324G:p.I442V,Ggt1:NM_001379537:exon12:c.A1324G:p.I442V,Ggt1:NM_001379538:exon12:c.A1324G:p.I442V,Ggt1:NM_001379539:exon12:c.A1324G:p.I442V"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	75954626	12A2p6	cell line	sgMsh2	75954626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	66	0	0	NA	exonic	Gm5134	synonymous SNV	Gm5134:NM_198635:exon1:c.T55C:p.L19L	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	CTT	synonymous	NA	NA	NA	NA
M6	chr10	76147554	12A2p6	cell line	sgMsh2	76147554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	66	0	0	NA	exonic	Slc5a4a	synonymous SNV	Slc5a4a:NM_133184:exon1:c.T24C:p.S8S	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	GTA	synonymous	NA	NA	NA	NA
M6	chr10	76357079	12A2p6	cell line	sgMsh2	76357079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	123	57	5	0.087719298	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon37:c.C8035T:p.H2679Y,Pcnt:NM_008787:exon37:c.C8089T:p.H2697Y"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	76389176	12A2p6	cell line	sgMsh2	76389176	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	78	26	4	0.153846154	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon25:c.T5493A:p.S1831R,Pcnt:NM_008787:exon25:c.T5493A:p.S1831R"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991299	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	76504413	12A2p6	cell line	sgMsh2	76504413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	52	38	5	0.131578947	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon22:c.T4517C:p.V1506A	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	77065287	12A2p6	cell line	sgMsh2	77065287	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.422	67	492	9	0.018292683	exonic	Col18a1	frameshift deletion	"Col18a1:NM_001109991:exon29:c.3092delC:p.P1031Lfs*65,Col18a1:NM_009929:exon30:c.2456delC:p.P819Lfs*65"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr10	77077196	12A2p6	cell line	sgMsh2	77077196	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.147	122	356	97	0.27247191	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon13:c.A2204G:p.E735G,Col18a1:NM_009929:exon14:c.A1568G:p.E523G"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7835968	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	77077198	12A2p6	cell line	sgMsh2	77077198	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.147	122	389	100	0.257069409	exonic	Col18a1	synonymous SNV	"Col18a1:NM_001109991:exon13:c.A2202G:p.K734K,Col18a1:NM_009929:exon14:c.A1566G:p.K522K"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7835968	CTT	synonymous	NA	NA	NA	NA
M6	chr10	77096292	12A2p6	cell line	sgMsh2	77096292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	92	188	64	0.340425532	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T962C:p.V321A,Col18a1:NM_009929:exon3:c.T326C:p.V109A"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	77096319	12A2p6	cell line	sgMsh2	77096319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	97	213	69	0.323943662	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T935C:p.L312P,Col18a1:NM_009929:exon3:c.T299C:p.L100P"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	77548693	12A2p6	cell line	sgMsh2	77548693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	105	0	0	NA	exonic	Itgb2	nonsynonymous SNV	Itgb2:NM_008404:exon6:c.A647G:p.Q216R	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	77606960	12A2p6	cell line	sgMsh2	77606960	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	84	8	0	0	exonic	Sumo3	synonymous SNV	Sumo3:NM_001301671:exon1:c.T13C:p.L5L	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9994606	GTT	synonymous	NA	NA	NA	NA
M6	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	208	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	78071997	12A2p6	cell line	sgMsh2	78071997	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	159	4	2	0.5	exonic	Icosl	synonymous SNV	Icosl:NM_015790:exon3:c.T390A:p.P130P	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	CTC	synonymous	NA	NA	NA	NA
M6	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	176	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.46E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	78752673	12A2p6	cell line	sgMsh2	78752673	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	53	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon1:c.A302T:p.K101M	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9954785	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	78801882	12A2p6	cell line	sgMsh2	78801882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.C1241A:p.P414H	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	79377807	12A2p6	cell line	sgMsh2	79377807	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	279	0	0	NA	exonic	Vmn2r82	stopgain	Vmn2r82:NM_001101572:exon2:c.C226T:p.R76X	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.49E-09	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr10	79378064	12A2p6	cell line	sgMsh2	79378064	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	336	0	0	NA	exonic	Vmn2r82	nonsynonymous SNV	Vmn2r82:NM_001101572:exon2:c.A483G:p.I161M	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	79541685	12A2p6	cell line	sgMsh2	79541685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	17	3	0.176470588	exonic	Mier2	nonsynonymous SNV	"Mier2:NM_001316699:exon13:c.T1433C:p.L478P,Mier2:NM_027422:exon13:c.T1427C:p.L476P"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	79542433	12A2p6	cell line	sgMsh2	79542433	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	116	53	3	0.056603774	exonic	Mier2	synonymous SNV	"Mier2:NM_001316699:exon12:c.G1155A:p.R385R,Mier2:NM_027422:exon12:c.G1149A:p.R383R"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	GCC	synonymous	NA	NA	NA	NA
M6	chr10	79675488	12A2p6	cell line	sgMsh2	79675488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	70	59	17	0.288135593	exonic	Tpgs1	nonsynonymous SNV	Tpgs1:NM_148934:exon2:c.T427C:p.Y143H	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9358901	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	79743227	12A2p6	cell line	sgMsh2	79743227	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	87	20	0	0	exonic	Polrmt	nonsynonymous SNV	Polrmt:NM_172551:exon3:c.T689C:p.V230A	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9997644	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	79865362	12A2p6	cell line	sgMsh2	79865362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	84	3	1	0.333333333	exonic	Plppr3	nonsynonymous SNV	Plppr3:NM_181681:exon7:c.A1645G:p.M549V	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr10	79900192	12A2p6	cell line	sgMsh2	79900192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	49	43	6	0.139534884	exonic	Med16	nonsynonymous SNV	"Med16:NM_001163276:exon7:c.A1118G:p.D373G,Med16:NM_001359629:exon7:c.A1121G:p.D374G,Med16:NM_198107:exon7:c.A1121G:p.D374G"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	79997840	12A2p6	cell line	sgMsh2	79997840	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	54	21	3	0.142857143	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon3:c.138delC:p.P48Lfs*29,Abca7:NM_013850:exon3:c.138delC:p.P48Lfs*29"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6	chr10	80024846	12A2p6	cell line	sgMsh2	80024846	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	48	110	19	0.172727273	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon10:c.A1018T:p.N340Y,Arhgap45:NM_001142701:exon11:c.A1366T:p.N456Y,Arhgap45:NM_001347074:exon11:c.A1399T:p.N467Y"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	AAA	nonsynonymous	A	5	AAAAA	NA
M6	chr10	80028669	12A2p6	cell line	sgMsh2	80028669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	48	74	8	0.108108108	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.C2173T:p.L725F,Arhgap45:NM_001142701:exon20:c.C2521T:p.L841F,Arhgap45:NM_001347074:exon20:c.C2554T:p.L852F"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	80060204	12A2p6	cell line	sgMsh2	80060204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	148	75	12	0.16	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon25:c.A2827T:p.S943C,Sbno2:NM_183426:exon25:c.A2827T:p.S943C"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9942899	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	80293842	12A2p6	cell line	sgMsh2	80293842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	121	2926	550	0.187969925	exonic	Rps15	nonsynonymous SNV	"Rps15:NM_001310726:exon3:c.A209G:p.Y70C,Rps15:NM_009091:exon3:c.A290G:p.Y97C"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999445	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Vardict	2	0.055	81	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9990969	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M6	chr10	80314629	12A2p6	cell line	sgMsh2	80314629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	128	1	0	0	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.G5429A:p.R1810H,Apc2:NM_001372237:exon15:c.G5516A:p.R1839H,Apc2:NM_001372238:exon15:c.G5519A:p.R1840H,Apc2:NM_001372239:exon15:c.G5444A:p.R1815H,Apc2:NM_001372240:exon15:c.G5558A:p.R1853H,Apc2:NM_001372241:exon15:c.G5555A:p.R1852H"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	42	1	0	0	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.0967407	GTA	synonymous	NA	NA	NA	NA
M6	chr10	80520339	12A2p6	cell line	sgMsh2	80520339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	170	1	0	0	exonic	Atp8b3	nonsynonymous SNV	Atp8b3:NM_026094:exon28:c.A3538G:p.I1180V	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.999776	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr10	80544051	12A2p6	cell line	sgMsh2	80544051	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	65	35	5	0.142857143	exonic	Rexo1	nonsynonymous SNV	Rexo1:NM_025852:exon10:c.C2944T:p.R982C	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9922408	CGC	nonsynonymous	CGCA	8	CGCACGCA	NA
M6	chr10	80634539	12A2p6	cell line	sgMsh2	80634539	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	250	50	0.2	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_001159591:exon2:c.G85T:p.G29C,Csnk1g2:NM_134002:exon2:c.G85T:p.G29C"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9989393	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	80639826	12A2p6	cell line	sgMsh2	80639826	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	75	215	42	0.195348837	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_134002:exon10:c.A1226C:p.N409T,Csnk1g2:NM_001159591:exon11:c.A1145C:p.N382T"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9989393	AAC	nonsynonymous	C	5	CCCCC	NA
M6	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	146	72	1	0.013888889	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999965	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	80730907	12A2p6	cell line	sgMsh2	80730907	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	222	98	13	0.132653061	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon3:c.T240G:p.I80M	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999999	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr10	80789091	12A2p6	cell line	sgMsh2	80789091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	42	36	7	0.194444444	exonic	Dot1l	nonsynonymous SNV	Dot1l:NM_199322:exon24:c.T3392C:p.M1131T	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.983813	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr10	80893198	12A2p6	cell line	sgMsh2	80893198	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	90	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon12:c.A1964G:p.K655R	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.928807	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	81081397	12A2p6	cell line	sgMsh2	81081397	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	66	146	36	0.246575342	exonic	Thop1	nonsynonymous SNV	Thop1:NM_022653:exon11:c.G1733A:p.R578Q	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9980794	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	81118183	12A2p6	cell line	sgMsh2	81118183	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	169	185	37	0.2	exonic	Map2k2	nonsynonymous SNV	"Map2k2:NM_001347144:exon4:c.A482C:p.E161A,Map2k2:NM_023138:exon4:c.A482C:p.E161A"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	81144148	12A2p6	cell line	sgMsh2	81144148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	114	131	36	0.27480916	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T175C:p.F59L	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	81144365	12A2p6	cell line	sgMsh2	81144365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	82	79	15	0.189873418	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T392A:p.I131N	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9993318	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr10	81244775	12A2p6	cell line	sgMsh2	81244775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	1	0	0	exonic	Zfr2	nonsynonymous SNV	Zfr2:NM_001034895:exon8:c.T1282C:p.Y428H	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	81308972	12A2p6	cell line	sgMsh2	81308972	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	154	59	2	0.033898305	exonic	Pip5k1c	synonymous SNV	"Pip5k1c:NM_001146687:exon7:c.C646T:p.L216L,Pip5k1c:NM_001293646:exon7:c.C646T:p.L216L,Pip5k1c:NM_001293647:exon7:c.C337T:p.L113L,Pip5k1c:NM_008844:exon7:c.C646T:p.L216L"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.14E-08	GCT	synonymous	GCT	8	GCTGCTGC	NA
M6	chr10	81387338	12A2p6	cell line	sgMsh2	81387338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	60	47	9	0.191489362	exonic	Dohh	synonymous SNV	Dohh:NM_133964:exon4:c.A450G:p.P150P	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	CAG	synonymous	NA	NA	NA	NA
M6	chr10	81509305	12A2p6	cell line	sgMsh2	81509305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	113	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T725C:p.L242P	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9816534	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	144	13	0	0	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	2.79E-09	TTG	synonymous	NA	NA	NA	NA
M6	chr10	82985899	12A2p6	cell line	sgMsh2	82985899	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	69	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon1:c.A35G:p.N12S	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	83191774	12A2p6	cell line	sgMsh2	83191774	T	C	SNV	Mutect2;MuSe;Vardict	3	0.217	61	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon3:c.T1034C:p.V345A	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9973297	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	86934874	12A2p6	cell line	sgMsh2	86934874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	145	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon24:c.A2644G:p.T882A	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	86949922	12A2p6	cell line	sgMsh2	86949922	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	120	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon17:c.G1855A:p.A619T	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	88777517	12A2p6	cell line	sgMsh2	88777517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	168	54	3	0.055555556	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon31:c.C3901T:p.P1301S	10qC1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	89805342	12A2p6	cell line	sgMsh2	89805342	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	216	79	3	0.037974684	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.2374delT:p.L793fs*0	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr10	91001014	12A2p6	cell line	sgMsh2	91001014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	88	49	11	0.224489796	exonic	Apaf1	nonsynonymous SNV	"Apaf1:NM_001042558:exon23:c.T3200C:p.V1067A,Apaf1:NM_001282947:exon23:c.T3167C:p.V1056A,Apaf1:NM_009684:exon23:c.T3200C:p.V1067A"	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	91061751	12A2p6	cell line	sgMsh2	91061751	A	G	SNV	Mutect2;Vardict	2	0.05	100	60	2	0.033333333	exonic	Apaf1	nonsynonymous SNV	"Apaf1:NM_001042558:exon7:c.T902C:p.M301T,Apaf1:NM_001282947:exon7:c.T869C:p.M290T,Apaf1:NM_009684:exon7:c.T902C:p.M301T"	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999616	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	91153120	12A2p6	cell line	sgMsh2	91153120	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	272	248	11	0.044354839	exonic	Tmpo	nonsynonymous SNV	"Tmpo:NM_001080130:exon5:c.G721T:p.A241S,Tmpo:NM_001080129:exon6:c.G841T:p.A281S"	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	93500663	12A2p6	cell line	sgMsh2	93500663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	242	1	0	0	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon14:c.T1253C:p.I418T	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9768975	ATC	nonsynonymous	CAT	8	CATCATCA	NA
M6	chr10	93516261	12A2p6	cell line	sgMsh2	93516261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	188	1	1	1	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon20:c.C1913T:p.A638V	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999925	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr10	93974002	12A2p6	cell line	sgMsh2	93974002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	80	56	9	0.160714286	exonic	Vezt	nonsynonymous SNV	"Vezt:NM_001304572:exon11:c.A1664T:p.E555V,Vezt:NM_001304575:exon11:c.A1676T:p.E559V,Vezt:NM_001304720:exon11:c.A1664T:p.E555V,Vezt:NM_172538:exon11:c.A1664T:p.E555V"	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	93996912	12A2p6	cell line	sgMsh2	93996912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	93	74	13	0.175675676	exonic	Vezt	synonymous SNV	"Vezt:NM_001304572:exon5:c.A636G:p.R212R,Vezt:NM_001304575:exon5:c.A636G:p.R212R,Vezt:NM_001304720:exon5:c.A636G:p.R212R,Vezt:NM_172538:exon5:c.A636G:p.R212R"	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	CTC	synonymous	NA	NA	NA	NA
M6	chr10	94195270	12A2p6	cell line	sgMsh2	94195270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	97	42	12	0.285714286	exonic	Nr2c1	synonymous SNV	Nr2c1:NM_011629:exon14:c.A1692G:p.V564V	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	TAC	synonymous	NA	NA	NA	NA
M6	chr10	96011018	12A2p6	cell line	sgMsh2	96011018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	50	58	12	0.206896552	exonic	Eea1	nonsynonymous SNV	Eea1:NM_001001932:exon11:c.A1159G:p.T387A	10qC2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9944928	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	100512322	12A2p6	cell line	sgMsh2	100512322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	114	53	10	0.188679245	exonic	Cep290	nonsynonymous SNV	Cep290:NM_146009:exon18:c.T1750C:p.F584L	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999193	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	100563393	12A2p6	cell line	sgMsh2	100563393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	129	37	5	0.135135135	exonic	Cep290	nonsynonymous SNV	Cep290:NM_146009:exon49:c.T6776C:p.L2259P	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	103393986	12A2p6	cell line	sgMsh2	103393986	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	158	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon4:c.C533A:p.P178H,Slc6a15:NM_001358821:exon4:c.C533A:p.P178H,Slc6a15:NM_175328:exon5:c.C533A:p.P178H"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	103404331	12A2p6	cell line	sgMsh2	103404331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	178	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon7:c.A914G:p.Q305R,Slc6a15:NM_001358821:exon7:c.A914G:p.Q305R,Slc6a15:NM_175328:exon8:c.A914G:p.Q305R"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	105413620	12A2p6	cell line	sgMsh2	105413620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	118	10	0	0	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C251A:p.P84H	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9994337	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	105763431	12A2p6	cell line	sgMsh2	105763431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	134	6	0	0	exonic	Mettl25	synonymous SNV	"Mettl25:NM_207522:exon12:c.T1732C:p.L578L,Mettl25:NM_001359640:exon13:c.T1297C:p.L433L,Mettl25:NM_001359642:exon13:c.T1297C:p.L433L"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	AAC	synonymous	NA	NA	NA	NA
M6	chr10	106893435	12A2p6	cell line	sgMsh2	106893435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	114	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359683:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359684:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359685:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359690:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359691:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359692:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359694:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359695:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359697:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359698:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359677:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359678:exon21:c.T2442C:p.H814H,Ppfia2:NM_001359680:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359681:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359682:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359686:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359687:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359688:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359689:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359693:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359696:exon21:c.T2430C:p.H810H,Ppfia2:NM_001205341:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359672:exon22:c.T2655C:p.H885H,Ppfia2:NM_001359673:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359674:exon22:c.T2643C:p.H881H,Ppfia2:NM_001359675:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359676:exon22:c.T2643C:p.H881H,Ppfia2:NM_177373:exon22:c.T2643C:p.H881H"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9996992	ATG	synonymous	NA	NA	NA	NA
M6	chr10	107575960	12A2p6	cell line	sgMsh2	107575960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	317	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon32:c.T5544C:p.D1848D,Ptprq:NM_001370987:exon32:c.T5547C:p.D1849D"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.12E-09	TAT	synonymous	NA	NA	NA	NA
M6	chr10	110782288	12A2p6	cell line	sgMsh2	110782288	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	69	8	4	0.5	exonic	E2f7	nonsynonymous SNV	"E2f7:NM_001358560:exon12:c.C2213T:p.P738L,E2f7:NM_178609:exon12:c.C2213T:p.P738L"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	111492909	12A2p6	cell line	sgMsh2	111492909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	172	428	99	0.231308411	exonic	Nap1l1	nonsynonymous SNV	"Nap1l1:NM_001358932:exon7:c.A509G:p.Y170C,Nap1l1:NM_015781:exon9:c.A698G:p.Y233C"	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	111506644	12A2p6	cell line	sgMsh2	111506644	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	11	205	46	0.224390244	exonic	Phlda1	synonymous SNV	Phlda1:NM_009344:exon1:c.C240T:p.C80C	10qD1	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9297858	GCC	synonymous	NA	NA	NA	NA
M6	chr10	112211131	12A2p6	cell line	sgMsh2	112211131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	242	0	0	NA	exonic	Caps2	nonsynonymous SNV	"Caps2:NM_178278:exon16:c.T1541G:p.I514S,Caps2:NM_001310675:exon17:c.T1415G:p.I472S"	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr10	112456180	12A2p6	cell line	sgMsh2	112456180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	67	0	0	NA	exonic	Kcnc2	synonymous SNV	"Kcnc2:NM_001025581:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359752:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359753:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379643:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379644:exon3:c.G1272A:p.Q424Q"	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.8969678	AGT	synonymous	NA	NA	NA	NA
M6	chr10	112461980	12A2p6	cell line	sgMsh2	112461980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	138	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	Kcnc2:NM_001025581:exon5:c.C1808A:p.P603H	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr10	115229164	12A2p6	cell line	sgMsh2	115229164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	87	203	35	0.172413793	exonic	Tbc1d15	nonsynonymous SNV	Tbc1d15:NM_025706:exon5:c.T515C:p.L172P	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9995197	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	122	57	5	0.087719298	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999991	TAC	synonymous	NA	NA	NA	NA
M6	chr10	115423268	12A2p6	cell line	sgMsh2	115423268	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	204	39	11	0.282051282	exonic	Zfc3h1	nonsynonymous SNV	Zfc3h1:NM_001033261:exon25:c.C4817A:p.P1606Q	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr10	117362129	12A2p6	cell line	sgMsh2	117362129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	64	124	21	0.169354839	exonic	Cpsf6	synonymous SNV	"Cpsf6:NM_001013391:exon5:c.A579C:p.S193S,Cpsf6:NM_001310609:exon5:c.A579C:p.S193S"	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9978087	GTG	synonymous	NA	NA	NA	NA
M6	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	157	8	2	0.25	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999953	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	120102859	12A2p6	cell line	sgMsh2	120102859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	143	25	8	0.32	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon5:c.A1709G:p.D570G	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	120925957	12A2p6	cell line	sgMsh2	120925957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	137	44	12	0.272727273	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon11:c.C2492T:p.A831V	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	146	90	3	0.033333333	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999847	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr10	121553926	12A2p6	cell line	sgMsh2	121553926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	87	65	11	0.169230769	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon14:c.A1620G:p.E540E	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	7.53E-08	CTT	synonymous	NA	NA	NA	NA
M6	chr10	121561593	12A2p6	cell line	sgMsh2	121561593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	116	75	9	0.12	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon9:c.A1173G:p.G391G	10qD2	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9995902	GTC	synonymous	NA	NA	NA	NA
M6	chr10	125294803	12A2p6	cell line	sgMsh2	125294803	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	135	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon3:c.G12T:p.E4D,Slc16a7:NM_001358915:exon3:c.G12T:p.E4D,Slc16a7:NM_011391:exon4:c.G12T:p.E4D"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	64	16	4	0.25	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	CCG	synonymous	NA	NA	NA	NA
M6	chr10	127169983	12A2p6	cell line	sgMsh2	127169983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	126	237	66	0.278481013	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon6:c.T826C:p.Y276H,B4galnt1:NM_001358577:exon7:c.T718C:p.Y240H,B4galnt1:NM_027739:exon7:c.T925C:p.Y309H,B4galnt1:NM_008080:exon8:c.T817C:p.Y273H"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	127171079	12A2p6	cell line	sgMsh2	127171079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	59	145	40	0.275862069	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon8:c.T1313C:p.V438A,B4galnt1:NM_001358577:exon9:c.T1205C:p.V402A,B4galnt1:NM_027739:exon9:c.T1412C:p.V471A,B4galnt1:NM_008080:exon10:c.T1304C:p.V435A"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	127284965	12A2p6	cell line	sgMsh2	127284965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	30	24	3	0.125	exonic	Mbd6	synonymous SNV	"Mbd6:NM_001347171:exon7:c.A1818G:p.P606P,Mbd6:NM_001379570:exon7:c.A1818G:p.P606P,Mbd6:NM_001379571:exon7:c.A1818G:p.P606P,Mbd6:NM_033072:exon7:c.A1818G:p.P606P"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9796647	GTG	synonymous	G	5	GGGGG	NA
M6	chr10	127308565	12A2p6	cell line	sgMsh2	127308565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	59	137	31	0.226277372	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon6:c.T605C:p.L202P,Mars1:NM_001171582:exon6:c.T605C:p.L202P"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	127444363	12A2p6	cell line	sgMsh2	127444363	A	-	Deletion	Strelka2;Vardict	2	0.16	50	94	7	0.074468085	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359243:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359245:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359246:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_027900:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001168292:exon3:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359244:exon4:c.53delA:p.K20Nfs*6"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M6	chr10	127476547	12A2p6	cell line	sgMsh2	127476547	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	139	57	3	0.052631579	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001168293:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359245:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359246:exon13:c.G1199A:p.C400Y,R3hdm2:NM_027900:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359243:exon14:c.G1253A:p.C418Y,R3hdm2:NM_001168292:exon15:c.G1253A:p.C418Y,R3hdm2:NM_001359244:exon15:c.G1157A:p.C386Y"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999976	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	161	4	0	0	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999969	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr10	127518121	12A2p6	cell line	sgMsh2	127518121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	132	184	25	0.135869565	exonic	Shmt2	nonsynonymous SNV	"Shmt2:NM_001252316:exon11:c.T1282G:p.L428V,Shmt2:NM_028230:exon11:c.T1291G:p.L431V"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	127553800	12A2p6	cell line	sgMsh2	127553800	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	95	101	19	0.188118812	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon59:c.A9365T:p.K3122M	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	127557203	12A2p6	cell line	sgMsh2	127557203	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	70	59	8	0.13559322	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon50:c.A8185T:p.T2729S	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9929834	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	125	55	1	0.018181818	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	7.61E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	128048308	12A2p6	cell line	sgMsh2	128048308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	170	708	145	0.20480226	exonic	Naca	nonsynonymous SNV	"Naca:NM_001282976:exon7:c.A574G:p.R192G,Naca:NM_013608:exon7:c.A574G:p.R192G,Naca:NM_001113199:exon8:c.A6490G:p.R2164G"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999998	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	128110868	12A2p6	cell line	sgMsh2	128110868	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	221	111	5	0.045045045	exonic	Baz2a	frameshift deletion	Baz2a:NM_054078:exon4:c.250delA:p.N84Tfs*92	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr10	128116127	12A2p6	cell line	sgMsh2	128116127	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	161	97	6	0.06185567	exonic	Baz2a	synonymous SNV	Baz2a:NM_054078:exon9:c.C1713T:p.G571G	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.53E-09	GCC	synonymous	NA	NA	NA	NA
M6	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	242	189	8	0.042328042	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	CAC	synonymous	NA	NA	NA	NA
M6	chr10	128211121	12A2p6	cell line	sgMsh2	128211121	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	174	26	2	0.076923077	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.A356C:p.D119A	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr10	128225892	12A2p6	cell line	sgMsh2	128225892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	84	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T11A:p.L4H	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	128225954	12A2p6	cell line	sgMsh2	128225954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	97	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T73C:p.F25L	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr10	128277187	12A2p6	cell line	sgMsh2	128277187	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	161	20	3	0.15	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon4:c.G347T:p.R116M	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr10	128277668	12A2p6	cell line	sgMsh2	128277668	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	105	23	1	0.043478261	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon5:c.G403T:p.A135S	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9103319	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr10	128389817	12A2p6	cell line	sgMsh2	128389817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	211	78	18	0.230769231	exonic	Ankrd52	synonymous SNV	Ankrd52:NM_172790:exon26:c.T2853C:p.L951L	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
M6	chr10	128492272	12A2p6	cell line	sgMsh2	128492272	G	T	SNV	Mutect2;Vardict	2	0.043	278	417	13	0.03117506	exonic	Myl6	synonymous SNV	"Myl6:NM_001317219:exon3:c.C201A:p.G67G,Myl6:NM_001317220:exon3:c.C201A:p.G67G,Myl6:NM_001317217:exon4:c.C306A:p.G102G,Myl6:NM_001317218:exon4:c.C306A:p.G102G,Myl6:NM_010860:exon4:c.C306A:p.G102G"	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.00E-09	TGC	synonymous	NA	NA	NA	NA
M6	chr10	128571459	12A2p6	cell line	sgMsh2	128571459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	146	152	26	0.171052632	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon24:c.A2918G:p.Y973C	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999903	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr10	129160683	12A2p6	cell line	sgMsh2	129160683	A	-	Deletion	Strelka2;Vardict	2	0.2613	199	0	0	NA	exonic	Olfr771	frameshift deletion	Olfr771:NM_146547:exon1:c.300delT:p.F100Lfs*6	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr10	129462699	12A2p6	cell line	sgMsh2	129462699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	255	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.A22G:p.T8A	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	8.27E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	129463208	12A2p6	cell line	sgMsh2	129463208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	374	0	0	NA	exonic	Olfr787	stopgain	Olfr787:NM_001011822:exon1:c.T531A:p.C177X	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr10	129463212	12A2p6	cell line	sgMsh2	129463212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	381	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.T535C:p.Y179H	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Vardict	2	0.053	77	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9992649	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M6	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Vardict	2	0.042	112	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr10	129648033	12A2p6	cell line	sgMsh2	129648033	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.159	90	0	0	NA	exonic	Olfr799	nonsynonymous SNV	Olfr799:NM_146927:exon1:c.A904G:p.I302V	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	A	5	AAAAA	NA
M6	chr10	129659829	12A2p6	cell line	sgMsh2	129659829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	245	0	0	NA	exonic	Olfr800	nonsynonymous SNV	Olfr800:NM_146548:exon1:c.A22G:p.T8A	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr10	129660061	12A2p6	cell line	sgMsh2	129660061	G	A	SNV	Mutect2;Vardict	2	0.028	342	0	0	NA	exonic	Olfr800	nonsynonymous SNV	Olfr800:NM_146548:exon1:c.G254A:p.G85D	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr10	129791191	12A2p6	cell line	sgMsh2	129791191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	332	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A397G:p.I133V	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr10	129801679	12A2p6	cell line	sgMsh2	129801679	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	373	0	0	NA	exonic	Olfr811	frameshift deletion	Olfr811:NM_146552:exon1:c.845delT:p.L282Cfs*1	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr10	129842231	12A2p6	cell line	sgMsh2	129842231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	391	0	0	NA	exonic	Olfr812	synonymous SNV	Olfr812:NM_146795:exon1:c.A810G:p.K270K	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	TTTA	8	TTTATTTA	NA
M6	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Vardict	2	0.035	315	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr10	130163110	12A2p6	cell line	sgMsh2	130163110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	265	0	0	NA	exonic	Olfr825	nonsynonymous SNV	Olfr825:NM_146677:exon1:c.T215C:p.I72T	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Vardict	2	0.025	431	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr11	3156811	12A2p6	cell line	sgMsh2	3156811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	51	6	0	0	exonic	Sfi1	synonymous SNV	Sfi1:NM_030207:exon12:c.A1137G:p.Q379Q	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9771174	TTT	synonymous	NA	NA	NA	NA
M6	chr11	3333214	12A2p6	cell line	sgMsh2	3333214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	81	20	7	0.35	exonic	Pik3ip1	nonsynonymous SNV	Pik3ip1:NM_178149:exon4:c.A313G:p.T105A	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	3419953	12A2p6	cell line	sgMsh2	3419953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	92	51	12	0.235294118	exonic	Rnf185	synonymous SNV	"Rnf185:NM_001290473:exon5:c.T249C:p.D83D,Rnf185:NM_001290472:exon6:c.T390C:p.D130D,Rnf185:NM_145355:exon7:c.T498C:p.D166D"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CAT	synonymous	NA	NA	NA	NA
M6	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	143	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9985735	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	3897432	12A2p6	cell line	sgMsh2	3897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	249	32	6	0.1875	exonic	Dusp18	nonsynonymous SNV	Dusp18:NM_173745:exon2:c.A421G:p.I141V	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9999931	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	4148945	12A2p6	cell line	sgMsh2	4148945	A	-	Deletion	Mutect2;Vardict	2	0.085	60	10	0	0	exonic	Ccdc157	frameshift deletion	"Ccdc157:NM_001164620:exon5:c.560delT:p.L187Cfs*71,Ccdc157:NM_177616:exon6:c.254delT:p.L85Cfs*71"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr11	4504060	12A2p6	cell line	sgMsh2	4504060	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	103	79	3	0.037974684	exonic	Mtmr3	nonsynonymous SNV	"Mtmr3:NM_001373897:exon8:c.T643G:p.W215G,Mtmr3:NM_028860:exon8:c.T643G:p.W215G"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9963413	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	4683002	12A2p6	cell line	sgMsh2	4683002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	71	146	27	0.184931507	exonic	Ascc2	nonsynonymous SNV	"Ascc2:NM_001376980:exon19:c.A1832G:p.N611S,Ascc2:NM_029291:exon20:c.A2174G:p.N725S"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	5058352	12A2p6	cell line	sgMsh2	5058352	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	59	0	0	NA	exonic	Rasl10a	nonsynonymous SNV	"Rasl10a:NM_001363179:exon1:c.G47A:p.G16D,Rasl10a:NM_145216:exon1:c.G47A:p.G16D"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr11	5061408	12A2p6	cell line	sgMsh2	5061408	T	C	SNV	Mutect2;Vardict	2	0.266	14	30	5	0.166666667	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190408:exon6:c.A1420G:p.T474A,Gas2l1:NM_144560:exon7:c.A1420G:p.T474A"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9429739	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	66	74	1	0.013513514	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.52574661	2	0.9625695	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	5070073	12A2p6	cell line	sgMsh2	5070073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	97	400	47	0.1175	exonic	Ewsr1	synonymous SNV	"Ewsr1:NM_001283062:exon15:c.G1848T:p.R616R,Ewsr1:NM_001362617:exon15:c.G1608T:p.R536R,Ewsr1:NM_001362616:exon16:c.G1866T:p.R622R,Ewsr1:NM_001362620:exon16:c.G945T:p.R315R,Ewsr1:NM_001283061:exon17:c.G1962T:p.R654R,Ewsr1:NM_007968:exon17:c.G1959T:p.R653R,Ewsr1:NM_001362612:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362613:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362614:exon18:c.G1977T:p.R659R,Ewsr1:NM_001362615:exon18:c.G1974T:p.R658R"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	GCC	synonymous	NA	NA	NA	NA
M6	chr11	5088002	12A2p6	cell line	sgMsh2	5088002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	87	219	47	0.214611872	exonic	Ewsr1	nonsynonymous SNV	"Ewsr1:NM_001283061:exon5:c.A371G:p.Y124C,Ewsr1:NM_001283062:exon5:c.A371G:p.Y124C,Ewsr1:NM_001283063:exon5:c.A371G:p.Y124C,Ewsr1:NM_001362617:exon5:c.A371G:p.Y124C,Ewsr1:NM_007968:exon5:c.A371G:p.Y124C,Ewsr1:NM_001362612:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362613:exon6:c.A392G:p.Y131C,Ewsr1:NM_001362614:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362615:exon6:c.A386G:p.Y129C,Ewsr1:NM_001362616:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362618:exon6:c.A389G:p.Y130C"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	GTA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M6	chr11	5103222	12A2p6	cell line	sgMsh2	5103222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	88	15	2	0.133333333	exonic	Rhbdd3	synonymous SNV	"Rhbdd3:NM_001290493:exon4:c.T21A:p.P7P,Rhbdd3:NM_001290491:exon5:c.T21A:p.P7P,Rhbdd3:NM_001290492:exon5:c.T21A:p.P7P,Rhbdd3:NM_177370:exon5:c.T21A:p.P7P"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9248691	CTG	synonymous	NA	NA	NA	NA
M6	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	150	3	0	0	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9998571	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	5870135	12A2p6	cell line	sgMsh2	5870135	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	114	5	0	0	exonic	Aebp1	synonymous SNV	"Aebp1:NM_001291857:exon18:c.T2253C:p.G751G,Aebp1:NM_009636:exon18:c.T2250C:p.G750G"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9997817	GTG	synonymous	NA	NA	NA	NA
M6	chr11	6313900	12A2p6	cell line	sgMsh2	6313900	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	139	212	44	0.20754717	exonic	Ogdh	nonsynonymous SNV	"Ogdh:NM_001252282:exon3:c.C335T:p.S112F,Ogdh:NM_001252283:exon3:c.C335T:p.S112F,Ogdh:NM_001252287:exon3:c.C335T:p.S112F,Ogdh:NM_001252288:exon3:c.C335T:p.S112F,Ogdh:NM_001361902:exon3:c.C335T:p.S112F,Ogdh:NM_001361903:exon3:c.C335T:p.S112F,Ogdh:NM_001361904:exon3:c.C335T:p.S112F,Ogdh:NM_001361905:exon3:c.C335T:p.S112F,Ogdh:NM_010956:exon3:c.C335T:p.S112F"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999717	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	6418301	12A2p6	cell line	sgMsh2	6418301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	117	21	3	0.142857143	exonic	Ppia	nonsynonymous SNV	Ppia:NM_008907:exon3:c.G176A:p.G59E	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	6589494	12A2p6	cell line	sgMsh2	6589494	G	A	SNV	Mutect2;Vardict	2	0.073	72	92	3	0.032608696	exonic	Ccm2	nonsynonymous SNV	"Ccm2:NM_001190343:exon4:c.G361A:p.A121T,Ccm2:NM_001190344:exon5:c.G343A:p.A115T,Ccm2:NM_146014:exon5:c.G535A:p.A179T"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.8757572	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	6601506	12A2p6	cell line	sgMsh2	6601506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	85	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1684G:p.T562A	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	194	1	0	0	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.9999914	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	7144735	12A2p6	cell line	sgMsh2	7144735	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	136	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon9:c.A1660G:p.N554D	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	3.38E-08	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr11	7198264	12A2p6	cell line	sgMsh2	7198264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	56	0	0	NA	exonic	Igfbp1	synonymous SNV	Igfbp1:NM_008341:exon1:c.T306G:p.G102G	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9962884	GTC	synonymous	NA	NA	NA	NA
M6	chr11	9298024	12A2p6	cell line	sgMsh2	9298024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	194	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon18:c.T7770C:p.L2590L	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	TTT	synonymous	NA	NA	NA	NA
M6	chr11	9331622	12A2p6	cell line	sgMsh2	9331622	C	-	Deletion	Mutect2;Vardict	2	0.062	139	0	0	NA	exonic	Abca13	frameshift deletion	Abca13:NM_178259:exon25:c.9503delC:p.Q3169Sfs*44	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr11	9588391	12A2p6	cell line	sgMsh2	9588391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	153	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon55:c.T14173G:p.F4725V	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999939	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	11801119	12A2p6	cell line	sgMsh2	11801119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	250	72	17	0.236111111	exonic	Fignl1	synonymous SNV	"Fignl1:NM_001163360:exon2:c.T1935C:p.V645V,Fignl1:NM_001163359:exon3:c.T1935C:p.V645V,Fignl1:NM_021891:exon3:c.T1935C:p.V645V"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.11E-08	GAA	synonymous	NA	NA	NA	NA
M6	chr11	11801717	12A2p6	cell line	sgMsh2	11801717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	159	32	3	0.09375	exonic	Fignl1	nonsynonymous SNV	"Fignl1:NM_001163360:exon2:c.T1337C:p.I446T,Fignl1:NM_001163359:exon3:c.T1337C:p.I446T,Fignl1:NM_021891:exon3:c.T1337C:p.I446T"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9980972	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	12253400	12A2p6	cell line	sgMsh2	12253400	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	151	20	3	0.15	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.C3226T:p.L1076F,Cobl:NM_001282994:exon12:c.C3280T:p.L1094F,Cobl:NM_172496:exon12:c.C3301T:p.L1101F"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	12253475	12A2p6	cell line	sgMsh2	12253475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	151	47	9	0.191489362	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.A3151G:p.T1051A,Cobl:NM_001282994:exon12:c.A3205G:p.T1069A,Cobl:NM_172496:exon12:c.A3226G:p.T1076A"	11qA1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	16263013	12A2p6	cell line	sgMsh2	16263013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	127	0	0	NA	exonic	Vstm2a	nonsynonymous SNV	"Vstm2a:NM_001290539:exon4:c.A397G:p.N133D,Vstm2a:NM_001363461:exon4:c.A397G:p.N133D,Vstm2a:NM_145967:exon4:c.A397G:p.N133D"	11qA2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr11	16263042	12A2p6	cell line	sgMsh2	16263042	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	107	0	0	NA	exonic	Vstm2a	synonymous SNV	"Vstm2a:NM_001290539:exon4:c.C426A:p.A142A,Vstm2a:NM_001363461:exon4:c.C426A:p.A142A,Vstm2a:NM_145967:exon4:c.C426A:p.A142A"	11qA2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998718	CCC	synonymous	NA	NA	NA	NA
M6	chr11	17078555	12A2p6	cell line	sgMsh2	17078555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	132	0	0	NA	exonic	Cnrip1	synonymous SNV	Cnrip1:NM_029861:exon3:c.C486T:p.S162S	11qA2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	CCT	synonymous	TCCT	8	TCCTTCCT	NA
M6	chr11	17946289	12A2p6	cell line	sgMsh2	17946289	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	294	47	2	0.042553191	exonic	Etaa1	synonymous SNV	"Etaa1:NM_001362970:exon5:c.A1368G:p.V456V,Etaa1:NM_026576:exon5:c.A1827G:p.V609V"	11qA3.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	CTA	synonymous	ATC	9	ATCATCATC	NA
M6	chr11	20008413	12A2p6	cell line	sgMsh2	20008413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	266	89	16	0.179775281	exonic	Spred2	nonsynonymous SNV	Spred2:NM_033523:exon4:c.G374A:p.G125D	11qA3.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.52E-09	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	179	585	36	0.061538462	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	1.29E-08	GCA	synonymous	NA	NA	NA	NA
M6	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	149	16	0	0	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9988836	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	23473232	12A2p6	cell line	sgMsh2	23473232	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	136	129	4	0.031007752	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon74:c.A9433G:p.I3145V	11qA3.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999875	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	23517230	12A2p6	cell line	sgMsh2	23517230	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	247	0	0	NA	exonic	1700093K21Rik	synonymous SNV	"1700093K21Rik:NM_001110133:exon4:c.T348G:p.A116A,1700093K21Rik:NM_026105:exon4:c.T348G:p.A116A,1700093K21Rik:NM_001370913:exon5:c.T348G:p.A116A"	11qA3.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.33E-08	TAG	synonymous	NA	NA	NA	NA
M6	chr11	23870296	12A2p6	cell line	sgMsh2	23870296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	214	53	8	0.150943396	exonic	Papolg	synonymous SNV	Papolg:NM_172555:exon15:c.T1293C:p.N431N	11qA3.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
M6	chr11	29571679	12A2p6	cell line	sgMsh2	29571679	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	129	0	0	NA	exonic	Clhc1	nonsynonymous SNV	"Clhc1:NM_001163521:exon10:c.T1211G:p.I404S,Clhc1:NM_028504:exon10:c.T1244G:p.I415S"	11qA3.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9997332	ATT	nonsynonymous	ATATT	10	ATATTATATT	NA
M6	chr11	29825156	12A2p6	cell line	sgMsh2	29825156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	38	0	0	NA	exonic	Fem1al	synonymous SNV	Fem1al:NM_176829:exon1:c.T300C:p.R100R	11qA3.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9867103	TAC	synonymous	NA	NA	NA	NA
M6	chr11	30143115	12A2p6	cell line	sgMsh2	30143115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	115	766	197	0.257180157	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon10:c.A1206G:p.I402M,Sptbn1:NM_175836:exon10:c.A1245G:p.I415M"	11qA3.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.6680914	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	30149994	12A2p6	cell line	sgMsh2	30149994	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	164	603	144	0.23880597	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon5:c.A544T:p.I182F,Sptbn1:NM_175836:exon5:c.A583T:p.I195F"	11qA3.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	30952611	12A2p6	cell line	sgMsh2	30952611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	139	144	22	0.152777778	exonic	Erlec1	synonymous SNV	Erlec1:NM_025745:exon2:c.A228G:p.K76K	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999845	ATT	synonymous	T	5	TTTTT	NA
M6	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	196	71	5	0.070422535	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr11	31369736	12A2p6	cell line	sgMsh2	31369736	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	83	9	3	0.333333333	exonic	Stc2	nonsynonymous SNV	Stc2:NM_011491:exon1:c.G127A:p.G43S	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9993745	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	31671559	12A2p6	cell line	sgMsh2	31671559	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	49	42	14	0.333333333	exonic	Bod1	nonsynonymous SNV	Bod1:NM_001024919:exon1:c.A143C:p.K48T	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	152	52	3	0.057692308	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.99999	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	125	73	1	0.01369863	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999917	CTT	synonymous	NA	NA	NA	NA
M6	chr11	32598830	12A2p6	cell line	sgMsh2	32598830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	101	18	3	0.166666667	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon9:c.A803G:p.N268S,Stk10:NM_001359178:exon9:c.A710G:p.N237S,Stk10:NM_009288:exon9:c.A1397G:p.N466S"	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	176	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.04E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	34071108	12A2p6	cell line	sgMsh2	34071108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	131	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon7:c.G463A:p.A155T	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999737	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	231	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	114	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9953433	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	34402347	12A2p6	cell line	sgMsh2	34402347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	100	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.A388G:p.S130G	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	34514488	12A2p6	cell line	sgMsh2	34514488	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	122	0	0	NA	exonic	Dock2	synonymous SNV	Dock2:NM_033374:exon23:c.G2316A:p.R772R	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999524	GCC	synonymous	NA	NA	NA	NA
M6	chr11	34514531	12A2p6	cell line	sgMsh2	34514531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	85	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon23:c.A2273G:p.Y758C	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7895587	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	194	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	2.03E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	34822188	12A2p6	cell line	sgMsh2	34822188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	198	30	6	0.2	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon7:c.A884C:p.K295T	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	35234893	12A2p6	cell line	sgMsh2	35234893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	195	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon4:c.C398T:p.P133L	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999987	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr11	35588985	12A2p6	cell line	sgMsh2	35588985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	189	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon10:c.T988C:p.Y330H	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.19E-09	GTA	nonsynonymous	A	5	AAAAA	NA
M6	chr11	35808486	12A2p6	cell line	sgMsh2	35808486	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	170	113	18	0.159292035	exonic	Rars	nonsynonymous SNV	Rars:NM_025936:exon15:c.T1979A:p.M660K	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999923	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	36047089	12A2p6	cell line	sgMsh2	36047089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	197	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon22:c.T4663C:p.F1555L,Tenm2:NM_011856:exon23:c.T4756C:p.F1586L"	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9998432	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	201	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GTT	synonymous	NA	NA	NA	NA
M6	chr11	40710205	12A2p6	cell line	sgMsh2	40710205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	339	56	7	0.125	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1337G:p.N446S	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.03E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr11	40728505	12A2p6	cell line	sgMsh2	40728505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	79	32	6	0.1875	exonic	Hmmr	synonymous SNV	Hmmr:NM_013552:exon3:c.G147A:p.E49E	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991854	ACT	synonymous	NA	NA	NA	NA
M6	chr11	41971878	12A2p6	cell line	sgMsh2	41971878	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	114	0	0	NA	exonic	Gabrg2	nonsynonymous SNV	"Gabrg2:NM_008073:exon4:c.A378T:p.K126N,Gabrg2:NM_177408:exon4:c.A378T:p.K126N,Gabrg2:NM_001362655:exon5:c.A324T:p.K108N,Gabrg2:NM_001362656:exon5:c.A321T:p.K107N"	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr11	42162557	12A2p6	cell line	sgMsh2	42162557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	246	0	0	NA	exonic	Gabra1	synonymous SNV	"Gabra1:NM_001359035:exon4:c.T249C:p.D83D,Gabra1:NM_010250:exon4:c.T249C:p.D83D"	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.42E-08	TAT	synonymous	NA	NA	NA	NA
M6	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	111	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9889706	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	42529453	12A2p6	cell line	sgMsh2	42529453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	194	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362647:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362649:exon5:c.A404G:p.Y135C,Gabrb2:NM_001362646:exon6:c.A500G:p.Y167C,Gabrb2:NM_008070:exon6:c.A500G:p.Y167C"	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	43203069	12A2p6	cell line	sgMsh2	43203069	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	85	0	0	NA	exonic	Atp10b	nonsynonymous SNV	Atp10b:NM_176999:exon10:c.A1439G:p.Y480C	11qA5	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	242	60	1	0.016666667	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	AAC	synonymous	AACA	8	AACAAACA	NA
M6	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Vardict	2	0.047	90	3	0	0	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999601	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	44561649	12A2p6	cell line	sgMsh2	44561649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	148	111	15	0.135135135	exonic	Rnf145	nonsynonymous SNV	"Rnf145:NM_001363166:exon10:c.T1454C:p.M485T,Rnf145:NM_028862:exon10:c.T1454C:p.M485T"	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999915	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	44869152	12A2p6	cell line	sgMsh2	44869152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	222	0	0	NA	exonic	Ebf1	synonymous SNV	"Ebf1:NM_001290709:exon7:c.A615G:p.P205P,Ebf1:NM_001290710:exon7:c.A615G:p.P205P,Ebf1:NM_001290711:exon7:c.A216G:p.P72P,Ebf1:NM_001362569:exon7:c.A519G:p.P173P,Ebf1:NM_001362571:exon7:c.A615G:p.P205P,Ebf1:NM_001362574:exon7:c.A615G:p.P205P,Ebf1:NM_001362576:exon7:c.A216G:p.P72P,Ebf1:NM_001362578:exon7:c.A216G:p.P72P,Ebf1:NM_007897:exon7:c.A615G:p.P205P,Ebf1:NM_001362575:exon8:c.A564G:p.P188P,Ebf1:NM_001362577:exon8:c.A216G:p.P72P,Ebf1:NM_001362579:exon8:c.A216G:p.P72P"	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9998484	CAC	synonymous	NA	NA	NA	NA
M6	chr11	46389319	12A2p6	cell line	sgMsh2	46389319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	66	0	0	NA	exonic	Itk	nonsynonymous SNV	"Itk:NM_001281965:exon1:c.T92C:p.F31S,Itk:NM_001281966:exon1:c.T92C:p.F31S,Itk:NM_001281967:exon1:c.T92C:p.F31S,Itk:NM_001281968:exon1:c.T92C:p.F31S,Itk:NM_010583:exon1:c.T92C:p.F31S"	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9980794	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	104	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.9919191	ATG	synonymous	NA	NA	NA	NA
M6	chr11	48889131	12A2p6	cell line	sgMsh2	48889131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	554	1	0	0	exonic	Gm5431	synonymous SNV	Gm5431:NM_001024230:exon5:c.A963G:p.Q321Q	11qB1.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1	CTT	synonymous	NA	NA	NA	NA
M6	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Vardict	2	0.036	378	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	314	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	49960554	12A2p6	cell line	sgMsh2	49960554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	52	0	0	NA	exonic	Rasgef1c	nonsynonymous SNV	"Rasgef1c:NM_001347462:exon5:c.A604T:p.S202C,Rasgef1c:NM_029004:exon5:c.A595T:p.S199C"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	50379470	12A2p6	cell line	sgMsh2	50379470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	159	421	78	0.185273159	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362529:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362530:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362533:exon2:c.T100C:p.C34R,Hnrnph1:NM_001347487:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362522:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362524:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362525:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362527:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362528:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362532:exon3:c.T100C:p.C34R,Hnrnph1:NM_021510:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362523:exon4:c.T100C:p.C34R"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	50776632	12A2p6	cell line	sgMsh2	50776632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	81	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon9:c.T1396G:p.C466G	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M6	chr11	50785555	12A2p6	cell line	sgMsh2	50785555	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	188	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon14:c.G2096A:p.G699E	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Vardict	2	0.067	155	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9985302	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	50900193	12A2p6	cell line	sgMsh2	50900193	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	183	9	0	0	exonic	Zfp2	nonsynonymous SNV	"Zfp2:NM_001044697:exon6:c.A1022G:p.Q341R,Zfp2:NM_001044698:exon6:c.A1022G:p.Q341R,Zfp2:NM_001044700:exon6:c.A1022G:p.Q341R,Zfp2:NM_001294323:exon6:c.A1022G:p.Q341R,Zfp2:NM_178447:exon7:c.A1022G:p.Q341R"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.20E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	51048724	12A2p6	cell line	sgMsh2	51048724	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	323	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.T616G:p.L206V	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.08E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	51586645	12A2p6	cell line	sgMsh2	51586645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	116	21	5	0.238095238	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon3:c.A263G:p.N88S,Phykpl:NM_028398:exon3:c.A263G:p.N88S"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	51831404	12A2p6	cell line	sgMsh2	51831404	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	88	21	3	0.142857143	exonic	Jade2	synonymous SNV	"Jade2:NM_199299:exon5:c.A321T:p.P107P,Jade2:NM_001357588:exon6:c.A537T:p.P179P"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9753194	GTG	synonymous	NA	NA	NA	NA
M6	chr11	53375629	12A2p6	cell line	sgMsh2	53375629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	56	309	49	0.158576052	exonic	Aff4	nonsynonymous SNV	"Aff4:NM_001363331:exon4:c.T944G:p.L315R,Aff4:NM_033565:exon4:c.T944G:p.L315R"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	171	325	1	0.003076923	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr11	53478591	12A2p6	cell line	sgMsh2	53478591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	58	0	0	NA	exonic	Sowaha	synonymous SNV	Sowaha:NM_183173:exon1:c.C1317T:p.D439D	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9802594	GGT	synonymous	NA	NA	NA	NA
M6	chr11	53536663	12A2p6	cell line	sgMsh2	53536663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	175	97	15	0.154639175	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon6:c.T708C:p.P236P,Septin8:NM_001252333:exon6:c.T702C:p.P234P,Septin8:NM_001347496:exon6:c.T708C:p.P236P,Septin8:NM_001361968:exon6:c.T702C:p.P234P,Septin8:NM_001361969:exon6:c.T522C:p.P174P,Septin8:NM_033144:exon6:c.T708C:p.P236P"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	CTT	synonymous	NA	NA	NA	NA
M6	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	86	79	20	0.253164557	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Vardict	2	0.048	92	48	3	0.0625	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999559	GTA	synonymous	NA	NA	NA	NA
M6	chr11	53684264	12A2p6	cell line	sgMsh2	53684264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	60	84	16	0.19047619	exonic	Rad50	nonsynonymous SNV	Rad50:NM_009012:exon12:c.A1831G:p.I611V	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	ATA	nonsynonymous	TTAT	8	TTATTTAT	NA
M6	chr11	54325615	12A2p6	cell line	sgMsh2	54325615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	191	0	0	NA	exonic	Acsl6	nonsynonymous SNV	"Acsl6:NM_001033597:exon6:c.T607C:p.Y203H,Acsl6:NM_001033598:exon6:c.T532C:p.Y178H,Acsl6:NM_001033599:exon6:c.T532C:p.Y178H,Acsl6:NM_144823:exon6:c.T607C:p.Y203H"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	54482531	12A2p6	cell line	sgMsh2	54482531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	132	40	8	0.2	exonic	Fnip1	synonymous SNV	Fnip1:NM_173753:exon6:c.T567C:p.S189S	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GTA	synonymous	NA	NA	NA	NA
M6	chr11	54493324	12A2p6	cell line	sgMsh2	54493324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	103	47	6	0.127659574	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon10:c.A1046G:p.N349S	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9358951	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	54568451	12A2p6	cell line	sgMsh2	54568451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	169	50	9	0.18	exonic	Rapgef6	synonymous SNV	"Rapgef6:NM_001252494:exon6:c.A450G:p.E150E,Rapgef6:NM_001252496:exon6:c.A450G:p.E150E,Rapgef6:NM_175258:exon6:c.A450G:p.E150E"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	AAC	synonymous	NA	NA	NA	NA
M6	chr11	54690210	12A2p6	cell line	sgMsh2	54690210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	162	95	11	0.115789474	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon25:c.A3779C:p.N1260T,Rapgef6:NM_001252494:exon26:c.A3794C:p.N1265T,Rapgef6:NM_001252496:exon27:c.A3818C:p.N1273T"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999966	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	176	13	1	0.076923077	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999946	AAC	nonsynonymous	A	5	AAAAA	NA
M6	chr11	54917807	12A2p6	cell line	sgMsh2	54917807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	69	150	16	0.106666667	exonic	Tnip1	nonsynonymous SNV	"Tnip1:NM_001199276:exon13:c.A1394G:p.N465S,Tnip1:NM_001271455:exon14:c.A1394G:p.N465S,Tnip1:NM_021327:exon14:c.A1553G:p.N518S,Tnip1:NM_001199275:exon15:c.A1553G:p.N518S,Tnip1:NM_001271456:exon15:c.A1553G:p.N518S"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr11	55497734	12A2p6	cell line	sgMsh2	55497734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	147	270	54	0.2	exonic	G3bp1	synonymous SNV	G3bp1:NM_013716:exon9:c.T921C:p.N307N	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	ATA	synonymous	NA	NA	NA	NA
M6	chr11	57201163	12A2p6	cell line	sgMsh2	57201163	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	108	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon5:c.A683T:p.Y228F,Gria1:NM_001252403:exon5:c.A476T:p.Y159F,Gria1:NM_008165:exon5:c.A683T:p.Y228F"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.724503	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	143	86	2	0.023255814	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	3.05E-09	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M6	chr11	58625368	12A2p6	cell line	sgMsh2	58625368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	0	0	NA	exonic	Olfr323	nonsynonymous SNV	Olfr323:NM_146376:exon1:c.T677C:p.L226P	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Vardict	2	0.036	456	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	AGT	synonymous	NA	NA	NA	NA
M6	chr11	58733096	12A2p6	cell line	sgMsh2	58733096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	186	0	0	NA	exonic	Olfr317	nonsynonymous SNV	Olfr317:NM_001011769:exon1:c.T68C:p.L23P	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9997627	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	58733122	12A2p6	cell line	sgMsh2	58733122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	186	0	0	NA	exonic	Olfr317	synonymous SNV	Olfr317:NM_001011769:exon1:c.T42C:p.L14L	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999989	TAA	synonymous	NA	NA	NA	NA
M6	chr11	59000260	12A2p6	cell line	sgMsh2	59000260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	76	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon93:c.T21445C:p.S7149P	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	59007828	12A2p6	cell line	sgMsh2	59007828	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.209	201	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon84:c.T19704C:p.I6568I	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CAA	synonymous	NA	NA	NA	NA
M6	chr11	59028617	12A2p6	cell line	sgMsh2	59028617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	173	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon76:c.T18601C:p.W6201R,Obscn:NM_199152:exon83:c.T20560C:p.W6854R"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999935	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	59163559	12A2p6	cell line	sgMsh2	59163559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	34	3	2	0.666666667	exonic	Iba57	nonsynonymous SNV	"Iba57:NM_001270791:exon1:c.G133A:p.G45S,Iba57:NM_173785:exon1:c.G133A:p.G45S"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9843134	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr11	59463124	12A2p6	cell line	sgMsh2	59463124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	7	2	0.285714286	exonic	Zfp867	nonsynonymous SNV	Zfp867:NM_178417:exon4:c.T1378C:p.Y460H	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	59589837	12A2p6	cell line	sgMsh2	59589837	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	147	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.A251C:p.Q84P	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9879042	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	59761185	12A2p6	cell line	sgMsh2	59761185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	98	37	9	0.243243243	exonic	Mprip	nonsynonymous SNV	Mprip:NM_001368931:exon16:c.A6176C:p.E2059A	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.980042	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	59792727	12A2p6	cell line	sgMsh2	59792727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	130	49	6	0.12244898	exonic	Flcn	synonymous SNV	"Flcn:NM_001271356:exon13:c.A1623G:p.A541A,Flcn:NM_001271357:exon13:c.A1623G:p.A541A,Flcn:NM_146018:exon13:c.A1623G:p.A541A"	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	ATG	synonymous	NA	NA	NA	NA
M6	chr11	59960641	12A2p6	cell line	sgMsh2	59960641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	47	28	9	0.321428571	exonic	Med9	nonsynonymous SNV	Med9:NM_138675:exon2:c.A295G:p.T99A	11qB1.3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	60201272	12A2p6	cell line	sgMsh2	60201272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	44	192	36	0.1875	exonic	Srebf1	nonsynonymous SNV	"Srebf1:NM_001313979:exon16:c.A2821G:p.T941A,Srebf1:NM_001358314:exon16:c.A2764G:p.T922A,Srebf1:NM_001358315:exon16:c.A2743G:p.T915A,Srebf1:NM_011480:exon16:c.A2836G:p.T946A"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9918357	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	60387305	12A2p6	cell line	sgMsh2	60387305	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	177	2	0	0	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon11:c.A1144C:p.I382L	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.22E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	60393818	12A2p6	cell line	sgMsh2	60393818	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	213	6	0	0	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon13:c.T1448C:p.L483P	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	60438534	12A2p6	cell line	sgMsh2	60438534	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	88	72	21	0.291666667	exonic	Gid4	nonsynonymous SNV	Gid4:NM_025757:exon5:c.C551A:p.A184D	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	60487239	12A2p6	cell line	sgMsh2	60487239	A	G	SNV	Mutect2;Vardict	2	0.046	117	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_182698:exon7:c.A518G:p.E173G,Myo15:NM_001103171:exon8:c.A4079G:p.E1360G,Myo15:NM_010862:exon8:c.A4079G:p.E1360G"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999984	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr11	61070416	12A2p6	cell line	sgMsh2	61070416	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	94	0	0	NA	exonic	Kcnj12	nonsynonymous SNV	"Kcnj12:NM_001267593:exon2:c.G1233T:p.Q411H,Kcnj12:NM_010603:exon3:c.G1539T:p.Q513H"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9943942	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	61266903	12A2p6	cell line	sgMsh2	61266903	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	23	110	25	0.227272727	exonic	Aldh3a2	nonsynonymous SNV	"Aldh3a2:NM_001331114:exon1:c.A104T:p.Q35L,Aldh3a2:NM_007437:exon1:c.A104T:p.Q35L"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9680764	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	61485766	12A2p6	cell line	sgMsh2	61485766	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	26	0	0	NA	exonic	Mfap4	frameshift deletion	"Mfap4:NM_001347545:exon2:c.52delC:p.C20Afs*54,Mfap4:NM_001361359:exon2:c.25delC:p.C11Afs*54,Mfap4:NM_029568:exon2:c.52delC:p.C20Afs*54"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6	chr11	61491124	12A2p6	cell line	sgMsh2	61491124	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	22	4	0.181818182	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon3:c.C961A:p.L321I,Mapk7:NM_001291035:exon3:c.C544A:p.L182I,Mapk7:NM_001291037:exon3:c.C751A:p.L251I,Mapk7:NM_001291033:exon4:c.C754A:p.L252I,Mapk7:NM_001291036:exon4:c.C544A:p.L182I,Mapk7:NM_001361989:exon4:c.C544A:p.L182I,Mapk7:NM_011841:exon4:c.C961A:p.L321I"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	84	168	39	0.232142857	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994145	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	61671685	12A2p6	cell line	sgMsh2	61671685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	42	0	0	NA	exonic	Grap	nonsynonymous SNV	Grap:NM_027817:exon5:c.T481A:p.C161S	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9747393	TTG	nonsynonymous	GCTT	8	GCTTGCTT	NA
M6	chr11	61915229	12A2p6	cell line	sgMsh2	61915229	G	A	SNV	Mutect2;Vardict	2	0.031	137	58	3	0.051724138	exonic	Akap10	synonymous SNV	Akap10:NM_019921:exon4:c.C672T:p.D224D	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.18E-09	GGT	synonymous	NA	NA	NA	NA
M6	chr11	62029334	12A2p6	cell line	sgMsh2	62029334	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	81	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001281818:exon2:c.A59C:p.D20A,Specc1:NM_001310526:exon2:c.A59C:p.D20A"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9991242	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	62211664	12A2p6	cell line	sgMsh2	62211664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	108	57	8	0.140350877	exonic	Specc1	synonymous SNV	"Specc1:NM_001029936:exon12:c.A2808G:p.A936A,Specc1:NM_001281818:exon14:c.A3048G:p.A1016A"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	CAT	synonymous	NA	NA	NA	NA
M6	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	90	169	6	0.035502959	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.509652326	2	0.9868178	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Vardict	2	0.056	273	2341	197	0.084152072	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	1.73E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	140	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	65855384	12A2p6	cell line	sgMsh2	65855384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	62	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon63:c.A11902G:p.T3968A	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	66502749	12A2p6	cell line	sgMsh2	66502749	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	125	0	0	NA	exonic	Shisa6	synonymous SNV	Shisa6:NM_001034874:exon2:c.C720A:p.T240T	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	TGG	synonymous	NA	NA	NA	NA
M6	chr11	67181039	12A2p6	cell line	sgMsh2	67181039	T	C	SNV	Mutect2;Vardict	2	0.026	287	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon16:c.T1592C:p.M531T	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	67215156	12A2p6	cell line	sgMsh2	67215156	T	G	SNV	Mutect2;Vardict	2	0.077	106	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon27:c.T3596G:p.L1199R	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	0.7539127	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	67245792	12A2p6	cell line	sgMsh2	67245792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	145	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.T1395C:p.I465I	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999896	TTG	synonymous	NA	NA	NA	NA
M6	chr11	67248692	12A2p6	cell line	sgMsh2	67248692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	176	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon16:c.T1834C:p.Y612H	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999898	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	67258686	12A2p6	cell line	sgMsh2	67258686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	141	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon36:c.T5243C:p.I1748T	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	180	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	4.21E-09	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	67681255	12A2p6	cell line	sgMsh2	67681255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	189	0	0	NA	exonic	Gas7	nonsynonymous SNV	"Gas7:NM_001277080:exon11:c.A800G:p.Y267C,Gas7:NM_001109657:exon12:c.A989G:p.Y330C,Gas7:NM_001277079:exon12:c.A977G:p.Y326C,Gas7:NM_008088:exon12:c.A1004G:p.Y335C"	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	67695718	12A2p6	cell line	sgMsh2	67695718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	140	0	0	NA	exonic	Rcvrn	nonsynonymous SNV	Rcvrn:NM_009038:exon1:c.A302G:p.K101R	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	51	12	0	0	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9948431	AAC	synonymous	NA	NA	NA	NA
M6	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	355	66	0	0	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	69122669	12A2p6	cell line	sgMsh2	69122669	T	-	Deletion	Mutect2;Vardict	2	0.429	5	0	0	NA	exonic	Hes7	frameshift deletion	Hes7:NM_033041:exon4:c.353delT:p.F119Sfs*16	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr11	69127508	12A2p6	cell line	sgMsh2	69127508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	109	0	0	NA	exonic	Aloxe3	synonymous SNV	Aloxe3:NM_011786:exon2:c.T330C:p.T110T	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	CTG	synonymous	TACTG	11	TACTGTACTGT	NA
M6	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	65	11	0	0	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr11	69357706	12A2p6	cell line	sgMsh2	69357706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	131	174	18	0.103448276	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon14:c.A2498G:p.E833G	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999737	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69395144	12A2p6	cell line	sgMsh2	69395144	C	A	SNV	Mutect2;Vardict	2	0.049	179	10	1	0.1	exonic	Cyb5d1	nonsynonymous SNV	Cyb5d1:NM_001045525:exon1:c.G150T:p.E50D	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	1.29E-08	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	69402221	12A2p6	cell line	sgMsh2	69402221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	123	68	15	0.220588235	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon15:c.T3728C:p.V1243A	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69404925	12A2p6	cell line	sgMsh2	69404925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	55	56	13	0.232142857	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon12:c.T2515C:p.Y839H	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9960359	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69477754	12A2p6	cell line	sgMsh2	69477754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	159	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon32:c.T5054C:p.V1685A	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.8656438	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	74	33	1	0.03030303	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133045-69579350	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6779186	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69668102	12A2p6	cell line	sgMsh2	69668102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	225	53	13	0.245283019	exonic	Eif4a1	nonsynonymous SNV	"Eif4a1:NM_001159375:exon9:c.A916G:p.M306V,Eif4a1:NM_144958:exon9:c.A916G:p.M306V"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr11	69685258	12A2p6	cell line	sgMsh2	69685258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	44	3	3	1	exonic	Tnfsf13	nonsynonymous SNV	"Tnfsf13:NM_001159505:exon1:c.T2C:p.M1T,Tnfsf13:NM_023517:exon1:c.T2C:p.M1T"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9918357	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	69760935	12A2p6	cell line	sgMsh2	69760935	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	138	1	0	0	exonic	Slc35g3	nonsynonymous SNV	Slc35g3:NM_019871:exon2:c.C289T:p.L97F	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69817073	12A2p6	cell line	sgMsh2	69817073	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	88	0	0	NA	exonic	Spem2	nonsynonymous SNV	Spem2:NM_175368:exon3:c.T1065G:p.S355R	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	69882634	12A2p6	cell line	sgMsh2	69882634	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	148	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon19:c.A1912G:p.S638G	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.999997	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	69913202	12A2p6	cell line	sgMsh2	69913202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	88	45	13	0.288888889	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon28:c.T4491C:p.Y1497Y,Neurl4:NM_001013414:exon29:c.T4563C:p.Y1521Y,Neurl4:NM_001291118:exon29:c.T4557C:p.Y1519Y"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9845213	ATA	synonymous	NA	NA	NA	NA
M6	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Vardict	2	0.069	62	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9316184	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	70	24	1	0.041666667	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6773386	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	70460791	12A2p6	cell line	sgMsh2	70460791	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	47	1	0	0	exonic	Zmynd15	synonymous SNV	Zmynd15:NM_001029929:exon2:c.T222A:p.G74G	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9932937	GTG	synonymous	NA	NA	NA	NA
M6	chr11	70664812	12A2p6	cell line	sgMsh2	70664812	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	140	184	4	0.02173913	exonic	Spag7	nonsynonymous SNV	"Spag7:NM_001167669:exon4:c.G268A:p.D90N,Spag7:NM_172561:exon4:c.G298A:p.D100N"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999997	TCA	nonsynonymous	TCA	8	TCATCATC	NA
M6	chr11	70674659	12A2p6	cell line	sgMsh2	70674659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	45	26	9	0.346153846	exonic	Camta2	nonsynonymous SNV	"Camta2:NM_001190379:exon14:c.T2390C:p.V797A,Camta2:NM_001364103:exon14:c.T2582C:p.V861A,Camta2:NM_001190376:exon15:c.T2462C:p.V821A,Camta2:NM_001190378:exon15:c.T2462C:p.V821A,Camta2:NM_178116:exon15:c.T2477C:p.V826A"	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	70726356	12A2p6	cell line	sgMsh2	70726356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	50	475	81	0.170526316	exonic	Kif1c	nonsynonymous SNV	Kif1c:NM_153103:exon22:c.G2479A:p.A827T	11qB3	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9944928	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	70934579	12A2p6	cell line	sgMsh2	70934579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	131	14	0.106870229	exonic	Rabep1	nonsynonymous SNV	"Rabep1:NM_001291141:exon13:c.T2071C:p.C691R,Rabep1:NM_001291142:exon13:c.T2080C:p.C694R,Rabep1:NM_019400:exon14:c.T2200C:p.C734R,Rabep1:NM_001291143:exon15:c.T1948C:p.C650R"	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999859	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	119	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999942	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	72176682	12A2p6	cell line	sgMsh2	72176682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	7	1	0.142857143	exonic	4933427D14Rik	nonsynonymous SNV	"4933427D14Rik:NM_001361564:exon10:c.A1781G:p.D594G,4933427D14Rik:NM_028963:exon10:c.A1781G:p.D594G"	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr11	72304809	12A2p6	cell line	sgMsh2	72304809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	63	1	0	0	exonic	Xaf1	synonymous SNV	Xaf1:NM_001037713:exon3:c.A312G:p.V104V	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	TAC	synonymous	NA	NA	NA	NA
M6	chr11	72317574	12A2p6	cell line	sgMsh2	72317574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.19	134	0	0	NA	exonic	Fbxo39	nonsynonymous SNV	Fbxo39:NM_001099688:exon2:c.A751G:p.T251A	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	72980714	12A2p6	cell line	sgMsh2	72980714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	121	94	26	0.276595745	exonic	Atp2a3	synonymous SNV	"Atp2a3:NM_001163336:exon14:c.A2040G:p.E680E,Atp2a3:NM_001163337:exon14:c.A2040G:p.E680E,Atp2a3:NM_016745:exon14:c.A2040G:p.E680E"	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	AAC	synonymous	NA	NA	NA	NA
M6	chr11	73008107	12A2p6	cell line	sgMsh2	73008107	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	132	0	0	NA	exonic	P2rx1	nonsynonymous SNV	P2rx1:NM_008771:exon2:c.T143C:p.V48A	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	0.9999999	GTG	nonsynonymous	GGTG	8	GGTGGGTG	NA
M6	chr11	73075717	12A2p6	cell line	sgMsh2	73075717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	186	61	10	0.163934426	exonic	Ncbp3	synonymous SNV	Ncbp3:NM_025818:exon11:c.T1398C:p.D466D	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9999683	ATG	synonymous	NA	NA	NA	NA
M6	chr11	73340436	12A2p6	cell line	sgMsh2	73340436	C	A	SNV	Mutect2;Vardict	2	0.037	146	1	0	0	exonic	Spata22	nonsynonymous SNV	Spata22:NM_001045531:exon6:c.C515A:p.P172H	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.84E-09	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	73354368	12A2p6	cell line	sgMsh2	73354368	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	443	0	0	NA	exonic	Olfr20	nonsynonymous SNV	Olfr20:NM_146923:exon2:c.T614G:p.L205R	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	73814500	12A2p6	cell line	sgMsh2	73814500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T581C:p.V194A	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9838644	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	73814508	12A2p6	cell line	sgMsh2	73814508	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	191	0	0	NA	exonic	Olfr392	synonymous SNV	Olfr392:NM_147006:exon2:c.C573T:p.D191D	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9998998	TGT	synonymous	NA	NA	NA	NA
M6	chr11	73906934	12A2p6	cell line	sgMsh2	73906934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	250	0	0	NA	exonic	Olfr395	nonsynonymous SNV	Olfr395:NM_147005:exon1:c.A557G:p.K186R	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	3.09E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	73907191	12A2p6	cell line	sgMsh2	73907191	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	447	0	0	NA	exonic	Olfr395	synonymous SNV	Olfr395:NM_147005:exon1:c.G300A:p.Q100Q	11qB4	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	GCT	synonymous	NA	NA	NA	NA
M6	chr11	74122125	12A2p6	cell line	sgMsh2	74122125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	279	0	0	NA	exonic	Olfr401	nonsynonymous SNV	Olfr401:NM_146706:exon1:c.A835G:p.I279V	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.49E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	74784202	12A2p6	cell line	sgMsh2	74784202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	209	115	15	0.130434783	exonic	Mettl16	synonymous SNV	Mettl16:NM_026197:exon3:c.T273C:p.D91D	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999988	ATT	synonymous	NA	NA	NA	NA
M6	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	130	38	2	0.052631579	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.967654	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	75167319	12A2p6	cell line	sgMsh2	75167319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	40	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T263C:p.M88T,Hic1:NM_010430:exon2:c.T743C:p.M248T"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9844192	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	75432703	12A2p6	cell line	sgMsh2	75432703	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	97	1	0	0	exonic	Serpinf2	synonymous SNV	Serpinf2:NM_008878:exon10:c.G1176A:p.E392E	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CCT	synonymous	NA	NA	NA	NA
M6	chr11	75490344	12A2p6	cell line	sgMsh2	75490344	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	187	341	17	0.049853372	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon5:c.C669A:p.S223S	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9999971	CCA	synonymous	NA	NA	NA	NA
M6	chr11	75637419	12A2p6	cell line	sgMsh2	75637419	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	169	61	0	0	exonic	Inpp5k	frameshift deletion	Inpp5k:NM_008916:exon5:c.442delG:p.G149Efs*5	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr11	75660278	12A2p6	cell line	sgMsh2	75660278	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	162	240	6	0.025	exonic	Myo1c	nonsynonymous SNV	"Myo1c:NM_001080774:exon6:c.G630T:p.E210D,Myo1c:NM_001080775:exon6:c.G678T:p.E226D,Myo1c:NM_001370611:exon6:c.G735T:p.E245D,Myo1c:NM_008659:exon6:c.G630T:p.E210D"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999984	AGG	nonsynonymous	G	5	GGGGG	NA
M6	chr11	75665554	12A2p6	cell line	sgMsh2	75665554	A	G	SNV	Mutect2;Strelka2	2	0.04	141	261	4	0.01532567	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon15:c.A1506G:p.L502L,Myo1c:NM_001080775:exon15:c.A1554G:p.L518L,Myo1c:NM_001370611:exon15:c.A1611G:p.L537L,Myo1c:NM_008659:exon15:c.A1506G:p.L502L"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	7.93E-09	TAG	synonymous	NA	NA	NA	NA
M6	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	185	242	5	0.020661157	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.9718514	CAC	synonymous	NA	NA	NA	NA
M6	chr11	76202236	12A2p6	cell line	sgMsh2	76202236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	48	6	2	0.333333333	exonic	Tlcd3a	nonsynonymous SNV	Tlcd3a:NM_027773:exon1:c.T103A:p.C35S	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	76234512	12A2p6	cell line	sgMsh2	76234512	C	A	SNV	Mutect2;Vardict	2	0.049	85	160	8	0.05	exonic	Glod4	nonsynonymous SNV	"Glod4:NM_001362901:exon5:c.G363T:p.K121N,Glod4:NM_026029:exon5:c.G420T:p.K140N"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9998807	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	76250233	12A2p6	cell line	sgMsh2	76250233	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	126	25	6	0.24	exonic	Mrm3	nonsynonymous SNV	Mrm3:NM_183263:exon4:c.G1066A:p.E356K	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr11	76424923	12A2p6	cell line	sgMsh2	76424923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	96	118	18	0.152542373	exonic	Abr	nonsynonymous SNV	"Abr:NM_001363379:exon3:c.T323C:p.V108A,Abr:NM_001291186:exon13:c.T1298C:p.V433A,Abr:NM_001346670:exon17:c.T1841C:p.V614A,Abr:NM_198018:exon17:c.T1988C:p.V663A,Abr:NM_198894:exon18:c.T1814C:p.V605A,Abr:NM_198895:exon18:c.T1952C:p.V651A"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9995983	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	77455152	12A2p6	cell line	sgMsh2	77455152	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	160	30	4	0.133333333	exonic	Ssh2	nonsynonymous SNV	"Ssh2:NM_001291190:exon14:c.A3962T:p.Q1321L,Ssh2:NM_177710:exon15:c.A3944T:p.Q1315L"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	77477532	12A2p6	cell line	sgMsh2	77477532	G	A	SNV	Mutect2;Vardict	2	0.076	63	26	2	0.076923077	exonic	Ankrd13b	nonsynonymous SNV	"Ankrd13b:NM_001373882:exon3:c.C263T:p.A88V,Ankrd13b:NM_001373883:exon3:c.C263T:p.A88V,Ankrd13b:NM_172945:exon3:c.C263T:p.A88V"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.76135	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	77692371	12A2p6	cell line	sgMsh2	77692371	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	235	255	5	0.019607843	exonic	Nufip2	synonymous SNV	Nufip2:NM_001024205:exon2:c.A1110G:p.V370V	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	2.15E-09	TAC	synonymous	NA	NA	NA	NA
M6	chr11	77777511	12A2p6	cell line	sgMsh2	77777511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	115	185	38	0.205405405	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291212:exon1:c.A196G:p.I66V,Myo18a:NM_001291213:exon1:c.A196G:p.I66V,Myo18a:NM_011586:exon1:c.A196G:p.I66V"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8747363	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	78154074	12A2p6	cell line	sgMsh2	78154074	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	67	15	0	0	exonic	Fam222b	nonsynonymous SNV	"Fam222b:NM_001346762:exon3:c.C76T:p.R26C,Fam222b:NM_001364110:exon3:c.C460T:p.R154C,Fam222b:NM_145430:exon3:c.C460T:p.R154C"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	3	0.6257831	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	88	36	0	0	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9997842	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	78366894	12A2p6	cell line	sgMsh2	78366894	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	140	1	0	0	exonic	Foxn1	nonsynonymous SNV	"Foxn1:NM_001277290:exon5:c.T800G:p.L267R,Foxn1:NM_008238:exon5:c.T803G:p.L268R"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	74	1	0	0	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	2	0.9365112	CTG	synonymous	NA	NA	NA	NA
M6	chr11	78515125	12A2p6	cell line	sgMsh2	78515125	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	206	168	31	0.18452381	exonic	Poldip2	nonsynonymous SNV	Poldip2:NM_026389:exon3:c.T281A:p.V94D	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	78589348	12A2p6	cell line	sgMsh2	78589348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	141	89	17	0.191011236	exonic	Nlk	nonsynonymous SNV	Nlk:NM_008702:exon5:c.T794G:p.I265S	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999678	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	78929831	12A2p6	cell line	sgMsh2	78929831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	155	0	0	NA	exonic	Nos2	synonymous SNV	Nos2:NM_010927:exon4:c.A261C:p.G87G	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	GAG	synonymous	NA	NA	NA	NA
M6	chr11	79680895	12A2p6	cell line	sgMsh2	79680895	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	101	4	3	0.75	exonic	Rab11fip4	synonymous SNV	Rab11fip4:NM_175543:exon4:c.C444A:p.P148P	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9997541	CCC	synonymous	NA	NA	NA	NA
M6	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	86	88	5	0.056818182	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8707433	CTA	synonymous	NA	NA	NA	NA
M6	chr11	80226080	12A2p6	cell line	sgMsh2	80226080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	175	100	19	0.19	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001163354:exon5:c.A279G:p.I93M,Rhot1:NM_001163355:exon5:c.A279G:p.I93M,Rhot1:NM_001362868:exon5:c.A279G:p.I93M,Rhot1:NM_021536:exon5:c.A279G:p.I93M"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9996524	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	80226108	12A2p6	cell line	sgMsh2	80226108	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	164	89	17	0.191011236	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001163354:exon5:c.A307T:p.I103F,Rhot1:NM_001163355:exon5:c.A307T:p.I103F,Rhot1:NM_001362868:exon5:c.A307T:p.I103F,Rhot1:NM_021536:exon5:c.A307T:p.I103F"	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.7293963	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	80330582	12A2p6	cell line	sgMsh2	80330582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	76	0	0	NA	exonic	Rhbdl3	nonsynonymous SNV	Rhbdl3:NM_139228:exon5:c.T545C:p.V182A	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.979052	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	180	173	3	0.01734104	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	81572854	12A2p6	cell line	sgMsh2	81572854	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.082	129	0	0	NA	exonic	1700071K01Rik	frameshift deletion	1700071K01Rik:NM_001033765:exon1:c.620delA:p.K207Rfs*16	11qB5	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr11	82785352	12A2p6	cell line	sgMsh2	82785352	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	140	58	16	0.275862069	exonic	Lig3	nonsynonymous SNV	"Lig3:NM_001291245:exon3:c.A588C:p.K196N,Lig3:NM_001291246:exon3:c.A588C:p.K196N,Lig3:NM_001291247:exon3:c.A588C:p.K196N,Lig3:NM_010716:exon3:c.A588C:p.K196N"	11qC	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M6	chr11	82881778	12A2p6	cell line	sgMsh2	82881778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	99	34	10	0.294117647	exonic	Rad51d	synonymous SNV	"Rad51d:NM_001277941:exon6:c.G525A:p.Q175Q,Rad51d:NM_001277939:exon7:c.G660A:p.Q220Q,Rad51d:NM_011235:exon7:c.G660A:p.Q220Q"	11qC	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	TCT	synonymous	NA	NA	NA	NA
M6	chr11	82901049	12A2p6	cell line	sgMsh2	82901049	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.178	35	29	3	0.103448276	exonic	Nle1	nonsynonymous SNV	Nle1:NM_145431:exon13:c.T1447C:p.W483R	11qC	chr11-69590981-82929860	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.975279	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	83487390	12A2p6	cell line	sgMsh2	83487390	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	219	441	9	0.020408163	exonic	Taf15	frameshift deletion	Taf15:NM_027427:exon6:c.455delA:p.N153Tfs*12	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	185	71	1	0.014084507	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	7.60E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr11	84293969	12A2p6	cell line	sgMsh2	84293969	T	C	SNV	Mutect2;Vardict	2	0.083	119	14	9	0.642857143	exonic	Acaca	synonymous SNV	Acaca:NM_133360:exon30:c.T3810C:p.H1270H	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.7735098	ATA	synonymous	NA	NA	NA	NA
M6	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	169	111	20	0.18018018	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	86061449	12A2p6	cell line	sgMsh2	86061449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	168	17	1	0.058823529	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3505G:p.T1169A	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	247	15	1	0.066666667	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	203	16	0	0	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Vardict	2	0.043	134	68	1	0.014705882	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	0.9999999	CAA	synonymous	CCT	8	CCTCCTCC	NA
M6	chr11	86328609	12A2p6	cell line	sgMsh2	86328609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	196	85	17	0.2	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon7:c.T1010C:p.V337A	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	75	8	0	0	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.000767967	CCA	synonymous	NA	NA	NA	NA
M6	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	186	24	0	0	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.26E-09	CTA	synonymous	NA	NA	NA	NA
M6	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	120	69	4	0.057971014	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	3.16E-08	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr11	87196947	12A2p6	cell line	sgMsh2	87196947	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	106	30	6	0.2	exonic	Trim37	nonsynonymous SNV	"Trim37:NM_001363026:exon17:c.A1838T:p.D613V,Trim37:NM_001363025:exon18:c.A1883T:p.D628V,Trim37:NM_001363027:exon18:c.A1883T:p.D628V,Trim37:NM_001363028:exon18:c.A1883T:p.D628V,Trim37:NM_197987:exon18:c.A1883T:p.D628V"	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	87231262	12A2p6	cell line	sgMsh2	87231262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	143	0	0	NA	exonic	Ppm1e	nonsynonymous SNV	Ppm1e:NM_177167:exon7:c.T1868C:p.V623A	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	87775042	12A2p6	cell line	sgMsh2	87775042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	64	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon17:c.T2605C:p.C869R	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9967589	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	88845679	12A2p6	cell line	sgMsh2	88845679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	93	48	12	0.25	exonic	Akap1	synonymous SNV	"Akap1:NM_001042541:exon2:c.A156G:p.R52R,Akap1:NM_009648:exon2:c.A156G:p.R52R"	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	GTC	synonymous	NA	NA	NA	NA
M6	chr11	88943840	12A2p6	cell line	sgMsh2	88943840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	142	438	116	0.264840183	exonic	Scpep1	nonsynonymous SNV	Scpep1:NM_029023:exon5:c.A503G:p.Y168C	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.7533596	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	88965039	12A2p6	cell line	sgMsh2	88965039	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	173	0	0	NA	exonic	Elobl	nonsynonymous SNV	Elobl:NM_001360780:exon3:c.T197C:p.V66A	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	177	25	2	0.08	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9999941	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr11	90683283	12A2p6	cell line	sgMsh2	90683283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	208	122	27	0.221311475	exonic	Tom1l1	synonymous SNV	"Tom1l1:NM_001357543:exon3:c.A174G:p.K58K,Tom1l1:NM_001357544:exon3:c.A174G:p.K58K"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTT	synonymous	NA	NA	NA	NA
M6	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	121	1	0	0	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.8412071	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	94463486	12A2p6	cell line	sgMsh2	94463486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon5:c.T602C:p.V201A,Cacna1g:NM_001177888:exon5:c.T602C:p.V201A,Cacna1g:NM_001177890:exon5:c.T602C:p.V201A,Cacna1g:NM_009783:exon5:c.T602C:p.V201A"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	94509328	12A2p6	cell line	sgMsh2	94509328	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	127	7	1	0.142857143	exonic	Mycbpap	nonsynonymous SNV	Mycbpap:NM_170671:exon10:c.T1142C:p.M381T	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9850741	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	94570669	12A2p6	cell line	sgMsh2	94570669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	232	23	8	0.347826087	exonic	Acsf2	nonsynonymous SNV	Acsf2:NM_153807:exon7:c.A833G:p.H278R	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.42E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	94632131	12A2p6	cell line	sgMsh2	94632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	284	383	55	0.143603133	exonic	Lrrc59	synonymous SNV	Lrrc59:NM_133807:exon2:c.T156C:p.S52S	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	4.66E-09	GTA	synonymous	NA	NA	NA	NA
M6	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	104	14	6	0.428571429	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998437	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	94757126	12A2p6	cell line	sgMsh2	94757126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	236	0	0	NA	exonic	Gm11545	synonymous SNV	Gm11545:NM_001105561:exon5:c.A432G:p.P144P	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.65E-08	GTG	synonymous	GGA	8	GGAGGAGG	NA
M6	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	126	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999924	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	95051493	12A2p6	cell line	sgMsh2	95051493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	70	731	175	0.239398085	exonic	Itga3	nonsynonymous SNV	"Itga3:NM_001306071:exon22:c.A2791G:p.T931A,Itga3:NM_013565:exon23:c.A2884G:p.T962A,Itga3:NM_001306162:exon24:c.A2884G:p.T962A"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.7389168	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	95578330	12A2p6	cell line	sgMsh2	95578330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	97	0	0	NA	exonic	Ngfr	nonsynonymous SNV	Ngfr:NM_033217:exon3:c.T221C:p.V74A	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.622312314	2	0.9821821	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	137	51	1	0.019607843	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9719034	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	96957655	12A2p6	cell line	sgMsh2	96957655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	112	25	4	0.16	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon4:c.A1138G:p.T380A,Sp2:NM_001363226:exon4:c.A1123G:p.T375A,Sp2:NM_030220:exon4:c.A1141G:p.T381A,Sp2:NM_001363225:exon5:c.A1123G:p.T375A"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	97099192	12A2p6	cell line	sgMsh2	97099192	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	79	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon6:c.A1173C:p.E391D	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991854	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	97231984	12A2p6	cell line	sgMsh2	97231984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	185	343	74	0.21574344	exonic	Npepps	nonsynonymous SNV	Npepps:NM_008942:exon13:c.A1444G:p.S482G	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	97339060	12A2p6	cell line	sgMsh2	97339060	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	46	0	0	NA	exonic	Gpr179	synonymous SNV	Gpr179:NM_001081220:exon12:c.C2268T:p.S756S	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.009864123	AGC	synonymous	NA	NA	NA	NA
M6	chr11	97351581	12A2p6	cell line	sgMsh2	97351581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	110	0	0	NA	exonic	Gpr179	synonymous SNV	Gpr179:NM_001081220:exon2:c.A436C:p.R146R	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9994439	CTG	synonymous	NA	NA	NA	NA
M6	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	149	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.96415	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	98398962	12A2p6	cell line	sgMsh2	98398962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	124	17	2	0.117647059	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon2:c.T202C:p.C68R	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999583	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	134	58	3	0.051724138	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999641	AAG	synonymous	NA	NA	NA	NA
M6	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	158	6	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.509652326	2	0.9997328	CAT	synonymous	NA	NA	NA	NA
M6	chr11	99234927	12A2p6	cell line	sgMsh2	99234927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	114	1	1	1	exonic	Krt222	nonsynonymous SNV	"Krt222:NM_001361584:exon6:c.A757G:p.T253A,Krt222:NM_172946:exon6:c.A877G:p.T293A"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9879825	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	99388055	12A2p6	cell line	sgMsh2	99388055	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	4	0	0	exonic	Krt10	nonsynonymous SNV	Krt10:NM_010660:exon2:c.T632G:p.L211R	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CAG	nonsynonymous	GCA	9	GCAGCAGCA	NA
M6	chr11	99416087	12A2p6	cell line	sgMsh2	99416087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	159	4	0	0	exonic	Krt12	nonsynonymous SNV	Krt12:NM_010661:exon8:c.T1388C:p.I463T	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	GAT	nonsynonymous	T	5	TTTTT	NA
M6	chr11	100037746	12A2p6	cell line	sgMsh2	100037746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	142	0	0	NA	exonic	Krt34	synonymous SNV	Krt34:NM_027563:exon7:c.T1152C:p.P384P	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999873	AAG	synonymous	NA	NA	NA	NA
M6	chr11	100049530	12A2p6	cell line	sgMsh2	100049530	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	84	0	0	NA	exonic	Krt31	synonymous SNV	Krt31:NM_010659:exon3:c.G498A:p.L166L	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	CCA	synonymous	NA	NA	NA	NA
M6	chr11	100133708	12A2p6	cell line	sgMsh2	100133708	C	A	SNV	Mutect2;Vardict	2	0.05	107	0	0	NA	exonic	Krt15	nonsynonymous SNV	Krt15:NM_008469:exon4:c.G801T:p.M267I	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999802	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr11	100431194	12A2p6	cell line	sgMsh2	100431194	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	116	151	8	0.052980132	exonic	Nt5c3b	nonsynonymous SNV	"Nt5c3b:NM_001362966:exon7:c.G627T:p.Q209H,Nt5c3b:NM_001362967:exon7:c.G522T:p.Q174H,Nt5c3b:NM_001102650:exon8:c.G651T:p.Q217H,Nt5c3b:NM_026561:exon9:c.G651T:p.Q217H"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999875	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	100463034	12A2p6	cell line	sgMsh2	100463034	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	191	18	5	0.277777778	exonic	Klhl11	nonsynonymous SNV	Klhl11:NM_172565:exon2:c.A1960T:p.R654W	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	100767017	12A2p6	cell line	sgMsh2	100767017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	85	40	7	0.175	exonic	Ghdc	nonsynonymous SNV	Ghdc:NM_031871:exon9:c.A1385G:p.N462S	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	GTT	nonsynonymous	GCAG	8	GCAGGCAG	NA
M6	chr11	100794593	12A2p6	cell line	sgMsh2	100794593	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	114	54	2	0.037037037	exonic	Stat5b	nonsynonymous SNV	"Stat5b:NM_001113563:exon12:c.A1424G:p.D475G,Stat5b:NM_001362682:exon12:c.A1424G:p.D475G,Stat5b:NM_011489:exon12:c.A1424G:p.D475G"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.999985	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	101159134	12A2p6	cell line	sgMsh2	101159134	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	6	0	0	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon6:c.T605A:p.V202E	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	101174536	12A2p6	cell line	sgMsh2	101174536	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	60	3	0	0	exonic	Ccr10	nonsynonymous SNV	Ccr10:NM_007721:exon2:c.T167A:p.L56Q	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9213018	CAG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M6	chr11	101296209	12A2p6	cell line	sgMsh2	101296209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	102	14	1	0.071428571	exonic	Becn1	synonymous SNV	Becn1:NM_001359821:exon4:c.T303C:p.I101I	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998216	TAA	synonymous	NA	NA	NA	NA
M6	chr11	101296219	12A2p6	cell line	sgMsh2	101296219	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	108	15	0	0	exonic	Becn1	nonsynonymous SNV	Becn1:NM_001359821:exon4:c.G293A:p.G98E	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	101325565	12A2p6	cell line	sgMsh2	101325565	G	C	SNV	Mutect2;Vardict	2	0.048	201	4	0	0	exonic	Aoc2	nonsynonymous SNV	Aoc2:NM_178932:exon1:c.G473C:p.G158A	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.70E-09	GGC	nonsynonymous	C	5	CCCCC	NA
M6	chr11	101460511	12A2p6	cell line	sgMsh2	101460511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	85	339	75	0.221238938	exonic	Vat1	nonsynonymous SNV	Vat1:NM_012037:exon5:c.G1003T:p.A335S	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	119	263	73	0.27756654	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999942	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	102205371	12A2p6	cell line	sgMsh2	102205371	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	107	68	13	0.191176471	exonic	Hdac5	synonymous SNV	"Hdac5:NM_001077696:exon9:c.C921T:p.P307P,Hdac5:NM_001284250:exon9:c.C918T:p.P306P,Hdac5:NM_010412:exon9:c.C918T:p.P306P,Hdac5:NM_001284249:exon10:c.C795T:p.P265P,Hdac5:NM_001361596:exon10:c.C795T:p.P265P,Hdac5:NM_001284248:exon11:c.C975T:p.P325P"	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CGG	synonymous	NA	NA	NA	NA
M6	chr11	102276580	12A2p6	cell line	sgMsh2	102276580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	28	0	0	NA	exonic	Asb16	synonymous SNV	Asb16:NM_148953:exon3:c.A771G:p.P257P	11qD	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9768578	CAG	synonymous	NA	NA	NA	NA
M6	chr11	102605275	12A2p6	cell line	sgMsh2	102605275	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	60	15	3	0.2	exonic	Fzd2	nonsynonymous SNV	Fzd2:NM_020510:exon1:c.G544C:p.G182R	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.8943213	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	102605588	12A2p6	cell line	sgMsh2	102605588	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.212	111	19	9	0.473684211	exonic	Fzd2	nonsynonymous SNV	Fzd2:NM_020510:exon1:c.T857G:p.I286S	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	142	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999993	TTC	synonymous	NA	NA	NA	NA
M6	chr11	103543231	12A2p6	cell line	sgMsh2	103543231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	206	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.A2583T:p.Q861H	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	103697646	12A2p6	cell line	sgMsh2	103697646	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	34	73	16	0.219178082	exonic	Gosr2	nonsynonymous SNV	"Gosr2:NM_001362852:exon1:c.T13C:p.Y5H,Gosr2:NM_001362858:exon1:c.T13C:p.Y5H,Gosr2:NM_019650:exon1:c.T13C:p.Y5H"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.8404857	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	103827260	12A2p6	cell line	sgMsh2	103827260	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	256	60	0	0	exonic	Nsf	nonsynonymous SNV	Nsf:NM_008740:exon19:c.T2108G:p.V703G	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	104637134	12A2p6	cell line	sgMsh2	104637134	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	137	32	3	0.09375	exonic	Itgb3	nonsynonymous SNV	Itgb3:NM_016780:exon5:c.G694A:p.V232M	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999998	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr11	105108949	12A2p6	cell line	sgMsh2	105108949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	98	2	0	0	exonic	Efcab3	synonymous SNV	Efcab3:NM_001081046:exon7:c.A663G:p.K221K	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	AAC	synonymous	NA	NA	NA	NA
M6	chr11	105385472	12A2p6	cell line	sgMsh2	105385472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	92	0	0	NA	exonic	Marchf10	synonymous SNV	Marchf10:NM_172568:exon8:c.A1989G:p.L663L	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9968214	GTA	synonymous	NA	NA	NA	NA
M6	chr11	105972931	12A2p6	cell line	sgMsh2	105972931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	127	4	0	0	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon8:c.T1204C:p.Y402H,Ace:NM_207624:exon8:c.T1204C:p.Y402H"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	106205422	12A2p6	cell line	sgMsh2	106205422	A	G	SNV	Mutect2;Vardict	2	0.034	229	291	11	0.037800687	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.T775C:p.Y259H	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	106205433	12A2p6	cell line	sgMsh2	106205433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	264	36	0.136363636	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.A764G:p.D255G	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	212	351	14	0.03988604	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr11	106327590	12A2p6	cell line	sgMsh2	106327590	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	63	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon16:c.G3047T:p.R1016M	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9975505	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr11	106330112	12A2p6	cell line	sgMsh2	106330112	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	154	0	0	NA	exonic	Scn4a	frameshift deletion	Scn4a:NM_133199:exon14:c.2720delA:p.N907Tfs*85	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr11	106376336	12A2p6	cell line	sgMsh2	106376336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	25	0	0	NA	exonic	Prr29	nonsynonymous SNV	Prr29:NM_029345:exon4:c.A326G:p.Y109C	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9719233	TAC	nonsynonymous	CTTGC	11	CTTGCCTTGCC	NA
M6	chr11	106423395	12A2p6	cell line	sgMsh2	106423395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	152	22	1	0.045454545	exonic	Ern1	nonsynonymous SNV	Ern1:NM_023913:exon7:c.T578C:p.V193A	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	106751363	12A2p6	cell line	sgMsh2	106751363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	248	0	0	NA	exonic	Milr1	nonsynonymous SNV	"Milr1:NM_001033435:exon1:c.T80C:p.L27P,Milr1:NM_001271372:exon1:c.T80C:p.L27P,Milr1:NM_001271373:exon1:c.T80C:p.L27P,Milr1:NM_001271374:exon1:c.T80C:p.L27P,Milr1:NM_001271375:exon1:c.T80C:p.L27P"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.25E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr11	106779085	12A2p6	cell line	sgMsh2	106779085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	128	27	17	0.62962963	exonic	Polg2	nonsynonymous SNV	"Polg2:NM_001353435:exon1:c.A358G:p.R120G,Polg2:NM_015810:exon1:c.A358G:p.R120G"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	98	50	0	0	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9991028	ATA	synonymous	ATAA	8	ATAAATAA	NA
M6	chr11	107671123	12A2p6	cell line	sgMsh2	107671123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	60	17	4	0.235294118	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon29:c.T4635C:p.H1545H,Helz:NM_001368755:exon30:c.T4632C:p.H1544H"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	ATG	synonymous	NA	NA	NA	NA
M6	chr11	107734998	12A2p6	cell line	sgMsh2	107734998	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	94	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.A766C:p.R256R	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9814368	CTG	synonymous	NA	NA	NA	NA
M6	chr11	107735260	12A2p6	cell line	sgMsh2	107735260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	125	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.T504C:p.S168S	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	CAC	synonymous	NA	NA	NA	NA
M6	chr11	109936435	12A2p6	cell line	sgMsh2	109936435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	238	2	1	0.5	exonic	Abca8b	nonsynonymous SNV	"Abca8b:NM_001362749:exon35:c.A4346G:p.Y1449C,Abca8b:NM_013851:exon36:c.A4532G:p.Y1511C"	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9843715	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	110078743	12A2p6	cell line	sgMsh2	110078743	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	89	1	0	0	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon8:c.T1006A:p.L336M	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	110151971	12A2p6	cell line	sgMsh2	110151971	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	158	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon9:c.G1251A:p.A417A	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	ACG	synonymous	NA	NA	NA	NA
M6	chr11	110210173	12A2p6	cell line	sgMsh2	110210173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	221	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon21:c.T2786C:p.I929T	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9999957	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	245	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr11	113625125	12A2p6	cell line	sgMsh2	113625125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	87	0	0	NA	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.T869C:p.L290P,Sstr2:NM_009217:exon2:c.T869C:p.L290P"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	113709409	12A2p6	cell line	sgMsh2	113709409	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.182	58	0	0	NA	exonic	Cpsf4l	synonymous SNV	"Cpsf4l:NM_001164532:exon1:c.A81C:p.L27L,Cpsf4l:NM_001362806:exon1:c.A81C:p.L27L,Cpsf4l:NM_026682:exon1:c.A81C:p.L27L"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9948544	GTA	synonymous	NA	NA	NA	NA
M6	chr11	113842148	12A2p6	cell line	sgMsh2	113842148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	66	0	0	NA	exonic	Sdk2	nonsynonymous SNV	Sdk2:NM_172800:exon21:c.A2870G:p.Y957C	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.8809884	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Vardict	2	0.027	385	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	114987450	12A2p6	cell line	sgMsh2	114987450	G	T	SNV	Mutect2;MuSe;Vardict	3	0.073	363	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.C235A:p.R79S	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9991003	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	115260855	12A2p6	cell line	sgMsh2	115260855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	59	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T278C:p.I93T	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	115261107	12A2p6	cell line	sgMsh2	115261107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	37	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T26C:p.L9P	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9870974	CAG	nonsynonymous	GGGC	8	GGGCGGGC	NA
M6	chr11	115390987	12A2p6	cell line	sgMsh2	115390987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	49	27	1	0.037037037	exonic	Cdr2l	nonsynonymous SNV	Cdr2l:NM_001080929:exon3:c.A317G:p.K106R	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	115587966	12A2p6	cell line	sgMsh2	115587966	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	68	19	3	0.157894737	exonic	Gga3	synonymous SNV	"Gga3:NM_001252067:exon11:c.A984G:p.S328S,Gga3:NM_173048:exon12:c.A1218G:p.S406S"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	1	9.09E-07	GTG	synonymous	NA	NA	NA	NA
M6	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	91	92	4	0.043478261	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.8085763	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	115797158	12A2p6	cell line	sgMsh2	115797158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	64	101	20	0.198019802	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon28:c.T3530A:p.L1177Q	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	115848252	12A2p6	cell line	sgMsh2	115848252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	83	20	0.240963855	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon10:c.A948G:p.S316S,Llgl2:NM_145438:exon10:c.A948G:p.S316S"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CAG	synonymous	NA	NA	NA	NA
M6	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Vardict	2	0.053	81	32	3	0.09375	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9994758	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	116006563	12A2p6	cell line	sgMsh2	116006563	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	122	187	4	0.021390374	exonic	Itgb4	nonsynonymous SNV	"Itgb4:NM_133663:exon34:c.A4451G:p.D1484G,Itgb4:NM_001005608:exon35:c.A4601G:p.D1534G"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.962036	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	119	148	12	0.081081081	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	2	0.507169	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Vardict	2	0.034	164	1	0	0	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.01E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	116293974	12A2p6	cell line	sgMsh2	116293974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	40	35	10	0.285714286	exonic	Exoc7	nonsynonymous SNV	"Exoc7:NM_001162872:exon11:c.A1334G:p.Q445R,Exoc7:NM_001362839:exon11:c.A1334G:p.Q445R,Exoc7:NM_001347636:exon12:c.A1427G:p.Q476R,Exoc7:NM_001378961:exon12:c.A1403G:p.Q468R,Exoc7:NM_016857:exon12:c.A1427G:p.Q476R,Exoc7:NM_001362838:exon13:c.A1496G:p.Q499R,Exoc7:NM_001378960:exon13:c.A1496G:p.Q499R"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9893925	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr11	116294024	12A2p6	cell line	sgMsh2	116294024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	48	82	11	0.134146341	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.A1284G:p.L428L,Exoc7:NM_001362839:exon11:c.A1284G:p.L428L,Exoc7:NM_001347636:exon12:c.A1377G:p.L459L,Exoc7:NM_001378961:exon12:c.A1353G:p.L451L,Exoc7:NM_016857:exon12:c.A1377G:p.L459L,Exoc7:NM_001362838:exon13:c.A1446G:p.L482L,Exoc7:NM_001378960:exon13:c.A1446G:p.L482L"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9937198	GTA	synonymous	NA	NA	NA	NA
M6	chr11	116438124	12A2p6	cell line	sgMsh2	116438124	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	58	28	1	0.035714286	exonic	Ubald2	frameshift deletion	Ubald2:NM_176902:exon3:c.314delC:p.P107Lfs*76	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6	chr11	116541710	12A2p6	cell line	sgMsh2	116541710	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	71	31	2	0.064516129	exonic	Ube2o	nonsynonymous SNV	Ube2o:NM_173755:exon14:c.A2429G:p.E810G	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8451163	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr11	116600911	12A2p6	cell line	sgMsh2	116600911	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	94	24	1	0.041666667	exonic	Rhbdf2	nonsynonymous SNV	"Rhbdf2:NM_001167680:exon15:c.A1717G:p.I573V,Rhbdf2:NM_172572:exon15:c.A1717G:p.I573V"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9856673	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	116685182	12A2p6	cell line	sgMsh2	116685182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	100	0	0	NA	exonic	St6galnac2	nonsynonymous SNV	St6galnac2:NM_009180:exon4:c.A442G:p.I148V	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9973416	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr11	116852120	12A2p6	cell line	sgMsh2	116852120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	201	401	59	0.14713217	exonic	Srsf2	nonsynonymous SNV	Srsf2:NM_011358:exon2:c.C574T:p.P192S	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	103	148	3	0.02027027	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9981656	GTG	synonymous	NA	NA	NA	NA
M6	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	106	32	1	0.03125	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	7.52E-06	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr11	117812466	12A2p6	cell line	sgMsh2	117812466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	93	213	33	0.154929577	exonic	Syngr2	nonsynonymous SNV	Syngr2:NM_009304:exon2:c.C107T:p.A36V	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.7795743	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	119447328	12A2p6	cell line	sgMsh2	119447328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	215	37	4	0.108108108	exonic	Rnf213	synonymous SNV	Rnf213:NM_001040005:exon32:c.T10155C:p.G3385G	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GTA	synonymous	NA	NA	NA	NA
M6	chr11	119486149	12A2p6	cell line	sgMsh2	119486149	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	136	28	2	0.071428571	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon68:c.A15438C:p.Q5146H	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr11	120009848	12A2p6	cell line	sgMsh2	120009848	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	76	0	0	NA	exonic	Aatk	nonsynonymous SNV	"Aatk:NM_001377503:exon8:c.T3190C:p.Y1064H,Aatk:NM_001198785:exon11:c.T3721C:p.Y1241H,Aatk:NM_001198787:exon11:c.T3550C:p.Y1184H,Aatk:NM_007377:exon11:c.T3550C:p.Y1184H"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9989675	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr11	120271785	12A2p6	cell line	sgMsh2	120271785	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	54	10	3	0.3	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.G908C:p.G303A	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	9.63E-07	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	64	18	0	0	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.0938742	TAC	nonsynonymous	C	5	CCCCC	NA
M6	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;MuSe;Vardict	3	0.083	112	1913	42	0.021955044	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.7530072	CTG	synonymous	NA	NA	NA	NA
M6	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	86	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.8261319	GTG	synonymous	NA	NA	NA	NA
M6	chr11	120444528	12A2p6	cell line	sgMsh2	120444528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	123	0	0	NA	exonic	Tspan10	nonsynonymous SNV	Tspan10:NM_145363:exon2:c.G463A:p.A155T	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	84	190	43	0.226315789	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr11	120478523	12A2p6	cell line	sgMsh2	120478523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	107	185	32	0.172972973	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon13:c.C1037T:p.P346L,Hgs:NM_008244:exon13:c.C1037T:p.P346L"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr11	120788491	12A2p6	cell line	sgMsh2	120788491	T	C	SNV	Mutect2;Vardict	2	0.057	152	32	0	0	exonic	Gps1	synonymous SNV	"Gps1:NM_001177874:exon13:c.T1284C:p.R428R,Gps1:NM_001346709:exon13:c.T1284C:p.R428R,Gps1:NM_001363440:exon13:c.T1281C:p.R427R,Gps1:NM_145370:exon13:c.T1401C:p.R467R"	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.99999	GTA	synonymous	NA	NA	NA	NA
M6	chr11	121460477	12A2p6	cell line	sgMsh2	121460477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	180	62	6	0.096774194	exonic	Tbcd	synonymous SNV	Tbcd:NM_029878:exon4:c.T402C:p.D134D	11qE2	chr11-83350706-121956668	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9732628	ATA	synonymous	NA	NA	NA	NA
M6	chr12	3984561	12A2p6	cell line	sgMsh2	3984561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	63	0	0	NA	exonic	Efr3b	nonsynonymous SNV	Efr3b:NM_001082483:exon6:c.A608G:p.N203S	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9976594	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	4850510	12A2p6	cell line	sgMsh2	4850510	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	99	14	3	0.214285714	exonic	Wdcp	nonsynonymous SNV	"Wdcp:NM_001170858:exon2:c.A365G:p.H122R,Wdcp:NM_173416:exon2:c.A365G:p.H122R"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.488193281	2	0.9723113	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	4891350	12A2p6	cell line	sgMsh2	4891350	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	366	114	15	0.131578947	exonic	Ubxn2a	synonymous SNV	Ubxn2a:NM_145441:exon4:c.T255G:p.G85G	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAC	synonymous	NA	NA	NA	NA
M6	chr12	5209980	12A2p6	cell line	sgMsh2	5209980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	60	0	0	NA	exonic	Klhl29	synonymous SNV	Klhl29:NM_001164493:exon3:c.A237G:p.E79E	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9971478	CTT	synonymous	NA	NA	NA	NA
M6	chr12	7978239	12A2p6	cell line	sgMsh2	7978239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	193	6	0	0	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon2:c.T109G:p.F37V	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9831338	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	8713572	12A2p6	cell line	sgMsh2	8713572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	154	301	30	0.099667774	exonic	Pum2	nonsynonymous SNV	"Pum2:NM_001160219:exon6:c.T728C:p.V243A,Pum2:NM_001160220:exon6:c.T728C:p.V243A,Pum2:NM_001160221:exon6:c.T728C:p.V243A,Pum2:NM_001160222:exon6:c.T728C:p.V243A,Pum2:NM_001310519:exon6:c.T728C:p.V243A,Pum2:NM_030723:exon6:c.T728C:p.V243A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9999637	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	231	42	2	0.047619048	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M6	chr12	10391126	12A2p6	cell line	sgMsh2	10391126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	54	20	2	0.1	exonic	Rdh14	nonsynonymous SNV	Rdh14:NM_023697:exon1:c.G287A:p.G96E	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.969948	GGG	nonsynonymous	G	5	GGGGG	NA
M6	chr12	11091884	12A2p6	cell line	sgMsh2	11091884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	115	0	0	NA	exonic	Kcns3	synonymous SNV	"Kcns3:NM_001168564:exon3:c.T813C:p.A271A,Kcns3:NM_173417:exon3:c.T813C:p.A271A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.6795475	CAG	synonymous	NA	NA	NA	NA
M6	chr12	11242309	12A2p6	cell line	sgMsh2	11242309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	216	17	2	0.117647059	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon14:c.A1673G:p.K558R	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9719556	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	11291704	12A2p6	cell line	sgMsh2	11291704	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.183	99	131	22	0.167938931	exonic	Smc6	synonymous SNV	"Smc6:NM_001324476:exon14:c.G1128T:p.R376R,Smc6:NM_025695:exon15:c.G1722T:p.R574R"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.999601	GGG	synonymous	NA	NA	NA	NA
M6	chr12	11456985	12A2p6	cell line	sgMsh2	11456985	A	-	Deletion	Strelka2;Vardict	2	0.1295	139	0	0	NA	exonic	Rad51ap2	frameshift deletion	Rad51ap2:NM_001111118:exon1:c.907delA:p.N305Mfs*23	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.694736592	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M6	chr12	11457116	12A2p6	cell line	sgMsh2	11457116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	168	0	0	NA	exonic	Rad51ap2	synonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1038G:p.V346V	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9466175	TAA	synonymous	NA	NA	NA	NA
M6	chr12	11457193	12A2p6	cell line	sgMsh2	11457193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	128	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1115G:p.Y372C	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999649	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	16822106	12A2p6	cell line	sgMsh2	16822106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	243	64	4	0.0625	exonic	E2f6	nonsynonymous SNV	E2f6:NM_033270:exon5:c.A550T:p.T184S	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.71E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	16965596	12A2p6	cell line	sgMsh2	16965596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	128	367	68	0.185286104	exonic	Rock2	synonymous SNV	Rock2:NM_009072:exon20:c.T2493C:p.N831N	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.997191	ATA	synonymous	NA	NA	NA	NA
M6	chr12	17297790	12A2p6	cell line	sgMsh2	17297790	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	170	1	0	0	exonic	Atp6v1c2	nonsynonymous SNV	"Atp6v1c2:NM_133699:exon6:c.T409C:p.S137P,Atp6v1c2:NM_001159632:exon7:c.T439C:p.S147P"	12qA1.1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9999516	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	21394991	12A2p6	cell line	sgMsh2	21394991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	145	62	15	0.241935484	exonic	Ywhaq	nonsynonymous SNV	Ywhaq:NM_011739:exon4:c.A652G:p.M218V	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.09813733	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr12	24044781	12A2p6	cell line	sgMsh2	24044781	C	T	SNV	Mutect2;Vardict	2	0.03	253	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	9030624G23Rik:NM_001256489:exon4:c.G388A:p.G130R	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr12	24044796	12A2p6	cell line	sgMsh2	24044796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	247	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	9030624G23Rik:NM_001256489:exon4:c.T373C:p.C125R	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9993546	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	24680651	12A2p6	cell line	sgMsh2	24680651	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	21	2	0	0	exonic	Cys1	synonymous SNV	"Cys1:NM_001004455:exon1:c.C258T:p.G86G,Cys1:NM_001161807:exon1:c.C258T:p.G86G,Cys1:NM_138686:exon1:c.C258T:p.G86G"	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.963713	GGC	synonymous	CGGG	8	CGGGCGGG	NA
M6	chr12	24712686	12A2p6	cell line	sgMsh2	24712686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	230	94	13	0.138297872	exonic	Rrm2	nonsynonymous SNV	Rrm2:NM_009104:exon8:c.T827C:p.L276P	12qA1.3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9998818	CTG	nonsynonymous	TGCC	10	TGCCTGCCTG	NA
M6	chr12	26474158	12A2p6	cell line	sgMsh2	26474158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	178	0	0	NA	exonic	Cmpk2	nonsynonymous SNV	Cmpk2:NM_020557:exon3:c.T953C:p.I318T	12qA2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.999976	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr12	30119426	12A2p6	cell line	sgMsh2	30119426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	218	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon4:c.T309C:p.R103R	12qA2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999977	CAC	synonymous	NA	NA	NA	NA
M6	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	350	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	31928627	12A2p6	cell line	sgMsh2	31928627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	192	278	50	0.179856115	exonic	Hbp1	nonsynonymous SNV	"Hbp1:NM_001361928:exon10:c.A1490G:p.K497R,Hbp1:NM_153198:exon10:c.A1520G:p.K507R"	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9999758	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	31930939	12A2p6	cell line	sgMsh2	31930939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	89	217	50	0.230414747	exonic	Hbp1	synonymous SNV	"Hbp1:NM_001361928:exon9:c.T1134C:p.R378R,Hbp1:NM_153198:exon9:c.T1164C:p.R388R,Hbp1:NM_177993:exon9:c.T1164C:p.R388R"	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8734787	CAC	synonymous	NA	NA	NA	NA
M6	chr12	33147779	12A2p6	cell line	sgMsh2	33147779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	95	11	1	0.090909091	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374022:exon1:c.T45C:p.A15A,Atxn7l1:NM_001374023:exon1:c.T45C:p.A15A,Atxn7l1:NM_028139:exon1:c.T45C:p.A15A"	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.999286	CTG	synonymous	GCT	11	GCTGCTGCTGC	NA
M6	chr12	33364412	12A2p6	cell line	sgMsh2	33364412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	113	1	0	0	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374024:exon8:c.A1158G:p.S386S,Atxn7l1:NM_001374022:exon10:c.A1530G:p.S510S"	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	CAG	synonymous	NA	NA	NA	NA
M6	chr12	36119017	12A2p6	cell line	sgMsh2	36119017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	157	312	45	0.144230769	exonic	Bzw2	nonsynonymous SNV	Bzw2:NM_025840:exon6:c.A511G:p.S171G	12qA3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9260845	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	41452717	12A2p6	cell line	sgMsh2	41452717	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	226	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.G1600A:p.A534T,Lrrn3:NM_010733:exon2:c.G1600A:p.A534T,Lrrn3:NM_001271708:exon3:c.G1600A:p.A534T"	12qB1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	2	0.5112178	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	172	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.6252997	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	44566323	12A2p6	cell line	sgMsh2	44566323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	179	0	0	NA	exonic	Nrcam	nonsynonymous SNV	"Nrcam:NM_001146031:exon17:c.A1796G:p.D599G,Nrcam:NM_176930:exon17:c.A1796G:p.D599G"	12qB2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9994233	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	50385204	12A2p6	cell line	sgMsh2	50385204	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	181	0	0	NA	exonic	Prkd1	synonymous SNV	"Prkd1:NM_001382814:exon12:c.A1731C:p.T577T,Prkd1:NM_008858:exon13:c.A1755C:p.T585T"	12qB3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.9999783	CTG	synonymous	NA	NA	NA	NA
M6	chr12	51603211	12A2p6	cell line	sgMsh2	51603211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	181	1	1	1	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon10:c.A982G:p.N328D,Coch:NM_001198835:exon11:c.A982G:p.N328D"	12qB3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.989879	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr12	51769296	12A2p6	cell line	sgMsh2	51769296	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	150	91	10	0.10989011	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon25:c.A3992C:p.D1331A	12qB3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9410412	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	51956223	12A2p6	cell line	sgMsh2	51956223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	140	103	12	0.116504854	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon5:c.T495C:p.T165T	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999271	CAG	synonymous	CCCAG	10	CCCAGCCCAG	NA
M6	chr12	53141873	12A2p6	cell line	sgMsh2	53141873	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	248	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon13:c.T6069A:p.S2023R	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.25E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	54203530	12A2p6	cell line	sgMsh2	54203530	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	55	6	0	0	exonic	Egln3	nonsynonymous SNV	Egln3:NM_028133:exon1:c.T32C:p.L11P	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9889601	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	204	194	39	0.201030928	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M6	chr12	55708096	12A2p6	cell line	sgMsh2	55708096	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	107	67	0	0	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001112714:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_019994:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001286263:exon25:c.A3550C:p.T1184P,Ralgapa1:NM_001368814:exon25:c.A4918C:p.T1640P"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9860026	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	57239200	12A2p6	cell line	sgMsh2	57239200	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	465	276	9	0.032608696	exonic	Prps1l3	nonsynonymous SNV	Prps1l3:NM_001037746:exon2:c.T775C:p.S259P	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	59174146	12A2p6	cell line	sgMsh2	59174146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	88	346	38	0.10982659	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001165253:exon17:c.G1414T:p.D472Y,Mia2:NM_001165254:exon17:c.G1381T:p.D461Y,Mia2:NM_001374760:exon19:c.G1513T:p.D505Y,Mia2:NM_146034:exon19:c.G1480T:p.D494Y,Mia2:NM_001329047:exon24:c.G3289T:p.D1097Y,Mia2:NM_001368839:exon24:c.G3286T:p.D1096Y"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AGA	nonsynonymous	A	5	AAAAA	NA
M6	chr12	61840213	12A2p6	cell line	sgMsh2	61840213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	187	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.G786A:p.T262T,Lrfn5:NM_178714:exon3:c.G786A:p.T262T"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CGT	synonymous	NA	NA	NA	NA
M6	chr12	61843778	12A2p6	cell line	sgMsh2	61843778	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	111	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1852G:p.S618A,Lrfn5:NM_178714:exon4:c.T1852G:p.S618A"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9768592	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	64471562	12A2p6	cell line	sgMsh2	64471562	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	216	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.G3129T:p.K1043N	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr12	64473036	12A2p6	cell line	sgMsh2	64473036	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	162	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.T1655G:p.V552G	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9999895	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	64473084	12A2p6	cell line	sgMsh2	64473084	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.19	141	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.C1607T:p.A536V	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr12	64957332	12A2p6	cell line	sgMsh2	64957332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	316	35	4	0.114285714	exonic	Klhl28	nonsynonymous SNV	Klhl28:NM_025707:exon2:c.A406G:p.N136D	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.13E-09	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	64967733	12A2p6	cell line	sgMsh2	64967733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	217	87	10	0.114942529	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.T1757C:p.V586A,Togaram1:NM_177805:exon1:c.T1757C:p.V586A"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9940477	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	65016552	12A2p6	cell line	sgMsh2	65016552	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	252	106	14	0.132075472	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_177805:exon17:c.T4640G:p.I1547S,Togaram1:NM_001364325:exon18:c.T4790G:p.I1597S"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9964533	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	256	84	3	0.035714286	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	CAA	nonsynonymous	T	5	TTTTT	NA
M6	chr12	65043292	12A2p6	cell line	sgMsh2	65043292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	281	79	16	0.202531646	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.T379C:p.Y127H	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	1.31E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	170	165	22	0.133333333	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6	chr12	65106560	12A2p6	cell line	sgMsh2	65106560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	111	15	4	0.266666667	exonic	Fancm	synonymous SNV	"Fancm:NM_001364447:exon14:c.T1566C:p.A522A,Fancm:NM_178912:exon14:c.T3789C:p.A1263A"	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8508942	CTT	synonymous	NA	NA	NA	NA
M6	chr12	65153830	12A2p6	cell line	sgMsh2	65153830	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	117	34	7	0.205882353	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon6:c.T1271A:p.I424N	12qC1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9848208	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	133	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.999977	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr12	69340984	12A2p6	cell line	sgMsh2	69340984	T	-	Deletion	Strelka2;Vardict	2	0.4545	22	62	7	0.112903226	exonic	Nemf	frameshift deletion	Nemf:NM_025441:exon14:c.1325delA:p.K442Sfs*17	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	3	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M6	chr12	69590736	12A2p6	cell line	sgMsh2	69590736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	127	67	11	0.164179104	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon20:c.A3296G:p.D1099G	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	69826325	12A2p6	cell line	sgMsh2	69826325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	146	118	23	0.194915254	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon18:c.A1406G:p.Q469R	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9965843	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	69969116	12A2p6	cell line	sgMsh2	69969116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	161	502	85	0.169322709	exonic	Sav1	nonsynonymous SNV	Sav1:NM_022028:exon4:c.G907A:p.A303T	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9967859	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr12	70197745	12A2p6	cell line	sgMsh2	70197745	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	185	1	1	1	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon13:c.A1535T:p.Y512F	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9757681	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr12	70464456	12A2p6	cell line	sgMsh2	70464456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	295	286	50	0.174825175	exonic	Tmx1	synonymous SNV	Tmx1:NM_028339:exon7:c.A648G:p.Q216Q	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9738677	AAC	synonymous	NA	NA	NA	NA
M6	chr12	70956648	12A2p6	cell line	sgMsh2	70956648	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	154	321	40	0.124610592	exonic	Actr10	nonsynonymous SNV	Actr10:NM_019785:exon10:c.A763C:p.I255L	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	225	697	14	0.020086083	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	192	531	28	0.052730697	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.02E-09	GTA	synonymous	NA	NA	NA	NA
M6	chr12	71184475	12A2p6	cell line	sgMsh2	71184475	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	114	10	0	0	exonic	2700049A03Rik	synonymous SNV	"2700049A03Rik:NM_001163378:exon21:c.T3006G:p.P1002P,2700049A03Rik:NM_029818:exon21:c.T3006G:p.P1002P"	12qC2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9968205	CTG	synonymous	NA	NA	NA	NA
M6	chr12	72101985	12A2p6	cell line	sgMsh2	72101985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	167	0	0	NA	exonic	Ccdc175	nonsynonymous SNV	Ccdc175:NM_028687:exon20:c.A2398G:p.R800G	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.999995	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	72470286	12A2p6	cell line	sgMsh2	72470286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	243	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon15:c.T1808C:p.V603A,Lrrc9:NM_001142729:exon15:c.T1811C:p.V604A,Lrrc9:NM_030070:exon15:c.T1811C:p.V604A"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9903228	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	72653207	12A2p6	cell line	sgMsh2	72653207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	56	37	1	0.027027027	exonic	Dhrs7	nonsynonymous SNV	Dhrs7:NM_025522:exon5:c.T650C:p.L217P	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	73109092	12A2p6	cell line	sgMsh2	73109092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	159	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.A1100C:p.N367T,Six4:NM_001362272:exon3:c.A1076C:p.N359T"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9940355	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	73168143	12A2p6	cell line	sgMsh2	73168143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	95	142	22	0.154929577	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon2:c.T233C:p.V78A	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Vardict	2	0.034	191	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr12	73941714	12A2p6	cell line	sgMsh2	73941714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	338	580	85	0.146551724	exonic	Hif1a	synonymous SNV	"Hif1a:NM_001313919:exon11:c.T1563C:p.T521T,Hif1a:NM_010431:exon11:c.T1560C:p.T520T"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.5531674	CTC	synonymous	NA	NA	NA	NA
M6	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Vardict	2	0.028	192	40	1	0.025	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr12	75716391	12A2p6	cell line	sgMsh2	75716391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	263	34	8	0.235294118	exonic	Sgpp1	synonymous SNV	Sgpp1:NM_030750:exon3:c.T1015C:p.L339L	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.29E-09	AAC	synonymous	NA	NA	NA	NA
M6	chr12	75966413	12A2p6	cell line	sgMsh2	75966413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	152	50	8	0.16	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon48:c.G8377A:p.G2793S	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999934	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr12	75979847	12A2p6	cell line	sgMsh2	75979847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	76	28	3	0.107142857	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon52:c.T10448C:p.L3483P	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990071	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	76145477	12A2p6	cell line	sgMsh2	76145477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	157	0	0	NA	exonic	Esr2	nonsynonymous SNV	"Esr2:NM_010157:exon5:c.A776G:p.H259R,Esr2:NM_207707:exon5:c.A776G:p.H259R"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9920847	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr12	76270450	12A2p6	cell line	sgMsh2	76270450	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	180	83	1	0.012048193	exonic	Mthfd1	nonsynonymous SNV	Mthfd1:NM_138745:exon2:c.C74G:p.T25S	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr12	76438455	12A2p6	cell line	sgMsh2	76438455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	144	2	0	0	exonic	Ppp1r36	synonymous SNV	Ppp1r36:NM_001163103:exon10:c.A951G:p.K317K	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.8051194	AAG	synonymous	A	5	AAAAA	NA
M6	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Vardict	2	0.034	199	126	1	0.007936508	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	CTC	nonsynonymous	C	5	CCCCC	NA
M6	chr12	76583325	12A2p6	cell line	sgMsh2	76583325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	73	2	1	0.5	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon36:c.A6890G:p.K2297R	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.7744165	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	78866537	12A2p6	cell line	sgMsh2	78866537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	185	390	58	0.148717949	exonic	Eif2s1	nonsynonymous SNV	Eif2s1:NM_026114:exon2:c.T11C:p.L4P	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.90952	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	120	10	0	0	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999914	AGA	synonymous	NA	NA	NA	NA
M6	chr12	80174498	12A2p6	cell line	sgMsh2	80174498	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	213	789	140	0.177439797	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon15:c.A1780C:p.T594P,Actn1:NM_001379075:exon15:c.A1780C:p.T594P,Actn1:NM_001379076:exon15:c.A1585C:p.T529P,Actn1:NM_134156:exon15:c.A1780C:p.T594P"	12qC3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	243	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	81724281	12A2p6	cell line	sgMsh2	81724281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	127	47	5	0.106382979	exonic	Map3k9	synonymous SNV	Map3k9:NM_001174107:exon10:c.A2532G:p.Q844Q	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999529	ATT	synonymous	NA	NA	NA	NA
M6	chr12	81772870	12A2p6	cell line	sgMsh2	81772870	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	181	27	5	0.185185185	exonic	Map3k9	synonymous SNV	"Map3k9:NM_001174107:exon2:c.C609T:p.C203C,Map3k9:NM_177395:exon2:c.C609T:p.C203C"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999999	GGC	synonymous	NA	NA	NA	NA
M6	chr12	81981013	12A2p6	cell line	sgMsh2	81981013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	109	35	0	0	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon26:c.T4850C:p.L1617P	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	83539395	12A2p6	cell line	sgMsh2	83539395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	190	71	11	0.154929577	exonic	Dcaf4	nonsynonymous SNV	"Dcaf4:NM_001165256:exon11:c.A1135G:p.T379A,Dcaf4:NM_030246:exon12:c.A1096G:p.T366A"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9875585	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	83555228	12A2p6	cell line	sgMsh2	83555228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	275	79	10	0.126582278	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon4:c.T209C:p.V70A,Zfyve1:NM_001359166:exon7:c.T1454C:p.V485A,Zfyve1:NM_183154:exon7:c.T1454C:p.V485A,Zfyve1:NM_001359167:exon8:c.T1454C:p.V485A"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9994289	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	83784299	12A2p6	cell line	sgMsh2	83784299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	101	1	0	0	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon23:c.A3161G:p.D1054G,Papln:NM_001205343:exon24:c.A3227G:p.D1076G"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9994907	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	83786790	12A2p6	cell line	sgMsh2	83786790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	218	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon25:c.T3413C:p.L1138P,Papln:NM_001205343:exon26:c.T3479C:p.L1160P"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.994135	CTG	nonsynonymous	GCCT	13	GCCTGCCTCCTGC	NA
M6	chr12	83952501	12A2p6	cell line	sgMsh2	83952501	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	208	50	4	0.08	exonic	Riox1	stoploss	Riox1:NM_023633:exon1:c.T1810A:p.X604K	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8333275	TTA	nonsynonymous	AGTT	8	AGTTAGTT	NA
M6	chr12	84053467	12A2p6	cell line	sgMsh2	84053467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	105	0	0	NA	exonic	Acot3	nonsynonymous SNV	Acot3:NM_134246:exon2:c.A16G:p.T6A	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.7296076	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	84335083	12A2p6	cell line	sgMsh2	84335083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	116	1	0	0	exonic	Zfp410	nonsynonymous SNV	Zfp410:NM_001252583:exon9:c.C1019T:p.P340L	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999293	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr12	84337617	12A2p6	cell line	sgMsh2	84337617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	93	66	10	0.151515152	exonic	Zfp410	synonymous SNV	"Zfp410:NM_001364223:exon6:c.T582C:p.G194G,Zfp410:NM_144833:exon9:c.T1005C:p.G335G"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.998883	GTG	synonymous	NA	NA	NA	NA
M6	chr12	84996859	12A2p6	cell line	sgMsh2	84996859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	54	29	6	0.206896552	exonic	Ylpm1	nonsynonymous SNV	"Ylpm1:NM_001347421:exon1:c.T370C:p.Y124H,Ylpm1:NM_178363:exon1:c.T370C:p.Y124H"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9307423	GTA	nonsynonymous	AGC	11	AGCAGCAGCAG	NA
M6	chr12	85042138	12A2p6	cell line	sgMsh2	85042138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	263	107	10	0.093457944	exonic	Ylpm1	synonymous SNV	"Ylpm1:NM_001347421:exon8:c.T2916C:p.R972R,Ylpm1:NM_178363:exon9:c.T5034C:p.R1678R"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9997177	GTG	synonymous	NA	NA	NA	NA
M6	chr12	85139623	12A2p6	cell line	sgMsh2	85139623	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	107	1	0	0	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364317:exon6:c.A662T:p.Y221F,Rps6kl1:NM_001364315:exon7:c.A710T:p.Y237F,Rps6kl1:NM_001364316:exon7:c.A680T:p.Y227F,Rps6kl1:NM_146244:exon7:c.A710T:p.Y237F"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	313	80	1	0.0125	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	86680169	12A2p6	cell line	sgMsh2	86680169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	91	2	0	0	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon1:c.A182T:p.E61V	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996312	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	86720492	12A2p6	cell line	sgMsh2	86720492	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	76	1	0	0	exonic	Angel1	nonsynonymous SNV	Angel1:NM_144524:exon5:c.T1109A:p.L370Q	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	87077206	12A2p6	cell line	sgMsh2	87077206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	385	0	0	NA	exonic	Tmem63c	nonsynonymous SNV	"Tmem63c:NM_001361704:exon17:c.T1457C:p.L486P,Tmem63c:NM_001361705:exon17:c.T1457C:p.L486P,Tmem63c:NM_172583:exon18:c.T1457C:p.L486P"	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9999693	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	87350283	12A2p6	cell line	sgMsh2	87350283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	195	255	23	0.090196078	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon5:c.A728G:p.N243S	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	87464594	12A2p6	cell line	sgMsh2	87464594	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	151	282	13	0.046099291	exonic	Snw1	nonsynonymous SNV	Snw1:NM_025507:exon3:c.A286T:p.I96F	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.70E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	88181783	12A2p6	cell line	sgMsh2	88181783	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	77	0	0	NA	exonic	Pramel51	frameshift deletion	Pramel51:NM_001105254:exon1:c.62delT:p.F21Sfs*6	12qD2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr12	88795504	12A2p6	cell line	sgMsh2	88795504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	269	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.G320A:p.S107N	12qD3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.88E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr12	89348299	12A2p6	cell line	sgMsh2	89348299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	144	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon7:c.A979G:p.M327V,Nrxn3:NM_001198587:exon8:c.A2098G:p.M700V"	12qD3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	90331986	12A2p6	cell line	sgMsh2	90331986	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	224	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_001252074:exon7:c.A1280G:p.N427S,Nrxn3:NM_001198587:exon20:c.A4292G:p.N1431S"	12qD3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	3.93E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	91537344	12A2p6	cell line	sgMsh2	91537344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	132	0	0	NA	exonic	Tshr	nonsynonymous SNV	Tshr:NM_011648:exon10:c.A1055G:p.Y352C	12qD3	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9997698	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	301	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr12	98435226	12A2p6	cell line	sgMsh2	98435226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	126	0	0	NA	exonic	Kcnk10	nonsynonymous SNV	"Kcnk10:NM_001316664:exon7:c.T1147C:p.F383L,Kcnk10:NM_001316665:exon7:c.T1198C:p.F400L,Kcnk10:NM_029911:exon7:c.T1189C:p.F397L"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	171	19	2	0.105263158	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	ATG	synonymous	NA	NA	NA	NA
M6	chr12	98783698	12A2p6	cell line	sgMsh2	98783698	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	155	139	33	0.237410072	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001160108:exon3:c.T586A:p.C196S,Zc3h14:NM_001364405:exon9:c.T931A:p.C311S,Zc3h14:NM_001160107:exon10:c.T1396A:p.C466S,Zc3h14:NM_001364404:exon10:c.T1006A:p.C336S,Zc3h14:NM_001008506:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364402:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364401:exon12:c.T1789A:p.C597S,Zc3h14:NM_001364403:exon12:c.T1399A:p.C467S,Zc3h14:NM_001364400:exon13:c.T1864A:p.C622S,Zc3h14:NM_029334:exon13:c.T1864A:p.C622S"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	2	0.9850279	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	100123103	12A2p6	cell line	sgMsh2	100123103	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	94	379	9	0.023746702	exonic	Psmc1	nonsynonymous SNV	Psmc1:NM_008947:exon10:c.A1231G:p.M411V	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999506	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	101058739	12A2p6	cell line	sgMsh2	101058739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	155	214	34	0.158878505	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A500G:p.E167G,Ppp4r3a:NM_211355:exon4:c.A500G:p.E167G"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Vardict	2	0.037	245	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	NA	NA	CCA	frameshift	NA	NA	NA	1
M6	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	129	93	14	0.150537634	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	TTC	synonymous	NA	NA	NA	NA
M6	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	64	61	2	0.032786885	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.5295539	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	102785347	12A2p6	cell line	sgMsh2	102785347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	203	107	22	0.205607477	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon11:c.C3157T:p.R1053W,Btbd7:NM_172806:exon12:c.C3157T:p.R1053W"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9975467	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr12	103088490	12A2p6	cell line	sgMsh2	103088490	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	240	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon21:c.C2845A:p.L949I	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9988396	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr12	103113162	12A2p6	cell line	sgMsh2	103113162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	143	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon30:c.T5528C:p.I1843T	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9387285	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	103169710	12A2p6	cell line	sgMsh2	103169710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	171	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon45:c.A7229G:p.D2410G	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.9999913	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	103173515	12A2p6	cell line	sgMsh2	103173515	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	253	0	0	NA	exonic	Unc79	synonymous SNV	Unc79:NM_001081017:exon47:c.A7533G:p.S2511S	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999999	CAA	synonymous	NA	NA	NA	NA
M6	chr12	103330500	12A2p6	cell line	sgMsh2	103330500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	164	0	0	NA	exonic	Asb2	synonymous SNV	"Asb2:NM_001374764:exon5:c.G753A:p.T251T,Asb2:NM_023049:exon7:c.G897A:p.T299T"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.8296123	GCG	synonymous	NA	NA	NA	NA
M6	chr12	103980370	12A2p6	cell line	sgMsh2	103980370	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	41	0	0	NA	exonic	Serpina11	nonsynonymous SNV	"Serpina11:NM_001166350:exon5:c.C1265T:p.P422L,Serpina11:NM_199314:exon5:c.C1271T:p.P424L"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.009936071	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr12	104103241	12A2p6	cell line	sgMsh2	104103241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	185	0	0	NA	exonic	Serpina5	synonymous SNV	Serpina5:NM_172953:exon3:c.A711G:p.E237E	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.878069	AAG	synonymous	NA	NA	NA	NA
M6	chr12	104696556	12A2p6	cell line	sgMsh2	104696556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	94	39	4	0.102564103	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon23:c.T4765C:p.L1589L	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996975	AAG	synonymous	NA	NA	NA	NA
M6	chr12	104696697	12A2p6	cell line	sgMsh2	104696697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	102	37	2	0.054054054	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.G4624A:p.D1542N	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998216	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr12	104729211	12A2p6	cell line	sgMsh2	104729211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	184	60	7	0.116666667	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon5:c.T460C:p.L154L	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999982	AAG	synonymous	NA	NA	NA	NA
M6	chr12	105032886	12A2p6	cell line	sgMsh2	105032886	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	50	96	13	0.135416667	exonic	Glrx5	nonsynonymous SNV	Glrx5:NM_028419:exon1:c.T187G:p.C63G	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9847594	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	105164467	12A2p6	cell line	sgMsh2	105164467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	196	0	0	NA	exonic	Tcl1b1	synonymous SNV	Tcl1b1:NM_013773:exon2:c.T208C:p.L70L	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.5351903	CTT	synonymous	NA	NA	NA	NA
M6	chr12	105809376	12A2p6	cell line	sgMsh2	105809376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	355	400	84	0.21	exonic	Papola	nonsynonymous SNV	"Papola:NM_001347440:exon8:c.T641C:p.V214A,Papola:NM_011112:exon8:c.T641C:p.V214A"	12qE	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9654099	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	108199358	12A2p6	cell line	sgMsh2	108199358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	276	90	16	0.177777778	exonic	Ccnk	synonymous SNV	Ccnk:NM_009832:exon11:c.A1098G:p.P366P	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999999	CAT	synonymous	CACC	8	CACCCACC	NA
M6	chr12	108357507	12A2p6	cell line	sgMsh2	108357507	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	103	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon11:c.A1001C:p.E334A	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9949365	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	108806507	12A2p6	cell line	sgMsh2	108806507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	156	461	76	0.164859002	exonic	Yy1	synonymous SNV	Yy1:NM_009537:exon2:c.A708T:p.T236T	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	CAG	synonymous	NA	NA	NA	NA
M6	chr12	109027407	12A2p6	cell line	sgMsh2	109027407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	49	6	1	0.166666667	exonic	Wdr25	synonymous SNV	Wdr25:NM_177602:exon7:c.T1548C:p.P516P	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9877262	CTG	synonymous	NA	NA	NA	NA
M6	chr12	110632717	12A2p6	cell line	sgMsh2	110632717	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	293	219	5	0.02283105	exonic	Dync1h1	synonymous SNV	Dync1h1:NM_030238:exon27:c.A5505G:p.E1835E	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.00E-09	AAT	synonymous	NA	NA	NA	NA
M6	chr12	110639846	12A2p6	cell line	sgMsh2	110639846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	97	81	13	0.160493827	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon36:c.T7349C:p.L2450P	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	110855054	12A2p6	cell line	sgMsh2	110855054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	53	15	2	0.133333333	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.A301G:p.T101A,Zfp839:NM_028365:exon2:c.A301G:p.T101A"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	1	0.7037404	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	110855303	12A2p6	cell line	sgMsh2	110855303	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	65	18	4	0.222222222	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.G550A:p.A184T,Zfp839:NM_028365:exon2:c.G550A:p.A184T"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr12	110926319	12A2p6	cell line	sgMsh2	110926319	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	190	9	0	0	exonic	Tecpr2	nonsynonymous SNV	"Tecpr2:NM_001289510:exon6:c.T794G:p.V265G,Tecpr2:NM_001081057:exon7:c.T794G:p.V265G"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999995	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr12	111242465	12A2p6	cell line	sgMsh2	111242466	AG	-	Deletion	Strelka2;Vardict	2	0.1534	352	25	0	0	exonic	Traf3	frameshift deletion	"Traf3:NM_001286122:exon4:c.317_318del:p.E108Dfs*10,Traf3:NM_001364364:exon5:c.317_318del:p.E108Dfs*10,Traf3:NM_011632:exon5:c.317_318del:p.E108Dfs*10"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.822954387	NA	NA	AAG	frameshift	AG	9	AGAGAGAGA	-2
M6	chr12	111669725	12A2p6	cell line	sgMsh2	111669725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	101	14	2	0.142857143	exonic	Ckb	synonymous SNV	Ckb:NM_021273:exon8:c.T984C:p.A328A	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.945203	CAG	synonymous	NA	NA	NA	NA
M6	chr12	111711096	12A2p6	cell line	sgMsh2	111711096	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	182	85	15	0.176470588	exonic	Bag5	nonsynonymous SNV	"Bag5:NM_001324480:exon2:c.T292G:p.F98V,Bag5:NM_001324481:exon2:c.T292G:p.F98V,Bag5:NM_001324482:exon2:c.T292G:p.F98V,Bag5:NM_027404:exon2:c.T292G:p.F98V"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999898	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	70	55	13	0.236363636	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9784726	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr12	112852194	12A2p6	cell line	sgMsh2	112852194	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	174	0	0	NA	exonic	Gpr132	nonsynonymous SNV	Gpr132:NM_019925:exon3:c.G1011T:p.K337N	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr12	112962602	12A2p6	cell line	sgMsh2	112962602	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	235	72	0	0	exonic	Brf1	nonsynonymous SNV	Brf1:NM_028193:exon15:c.A1543G:p.I515V	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr12	113068082	12A2p6	cell line	sgMsh2	113068082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	81	32	3	0.09375	exonic	Pacs2	nonsynonymous SNV	"Pacs2:NM_001291445:exon18:c.A1907G:p.D636G,Pacs2:NM_001081170:exon19:c.A1997G:p.D666G,Pacs2:NM_001291444:exon19:c.A2003G:p.D668G"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9932747	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr12	113130589	12A2p6	cell line	sgMsh2	113130589	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	125	261	32	0.122605364	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001364622:exon11:c.A1022C:p.N341T,Mta1:NM_001364623:exon11:c.A1022C:p.N341T,Mta1:NM_054081:exon11:c.A1022C:p.N341T,Mta1:NM_001346696:exon12:c.A1073C:p.N358T,Mta1:NM_001364620:exon12:c.A1073C:p.N358T,Mta1:NM_001364621:exon12:c.A1073C:p.N358T"	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9989989	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr12	113490367	12A2p6	cell line	sgMsh2	113490367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	467	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T803C:p.V268A	12qF1	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr12	116059469	12A2p6	cell line	sgMsh2	116059469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	172	47	6	0.127659574	exonic	Zfp386	nonsynonymous SNV	"Zfp386:NM_001004066:exon3:c.A806T:p.E269V,Zfp386:NM_019565:exon3:c.A701T:p.E234V"	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7385234	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr12	116841323	12A2p6	cell line	sgMsh2	116841323	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	264	21	13	0.619047619	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon5:c.T457A:p.Y153N	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9923444	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr12	117233326	12A2p6	cell line	sgMsh2	117233326	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	239	13	3	0.230769231	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon17:c.G2419T:p.G807C	12qF2	chr12-3501831-119465464	6	4	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9845162	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr13	3577004	12A2p6	cell line	sgMsh2	3577004	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	256	76	12	0.157894737	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon14:c.G2615A:p.S872N,Tasor2:NM_134063:exon14:c.G2945A:p.S982N"	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	1.40E-08	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	3588492	12A2p6	cell line	sgMsh2	3588492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	106	74	16	0.216216216	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon11:c.T1238C:p.L413P,Tasor2:NM_134063:exon11:c.T1238C:p.L413P"	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	3886115	12A2p6	cell line	sgMsh2	3886115	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	122	363	8	0.022038567	exonic	Net1	frameshift deletion	"Net1:NM_001047159:exon8:c.968delA:p.K323Rfs*16,Net1:NM_019671:exon10:c.1130delA:p.K377Rfs*16"	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr13	8991761	12A2p6	cell line	sgMsh2	8991761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	117	182	27	0.148351648	exonic	Gtpbp4	synonymous SNV	Gtpbp4:NM_027000:exon4:c.T414C:p.C138C	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	TAC	synonymous	NA	NA	NA	NA
M6	chr13	9575459	12A2p6	cell line	sgMsh2	9575459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	15	2	0.133333333	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon16:c.A1854G:p.I618M	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	9690368	12A2p6	cell line	sgMsh2	9690368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	218	34	14	0.411764706	exonic	Zmynd11	synonymous SNV	"Zmynd11:NM_001347479:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347480:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347470:exon12:c.T1305C:p.S435S,Zmynd11:NM_001347471:exon12:c.T1305C:p.S435S"	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M6	chr13	11587341	12A2p6	cell line	sgMsh2	11587341	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	121	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon94:c.A13654G:p.R4552G	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CTG	nonsynonymous	G	5	GGGGG	NA
M6	chr13	11595649	12A2p6	cell line	sgMsh2	11595649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	144	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon90:c.T12290C:p.V4097A	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	12212733	12A2p6	cell line	sgMsh2	12212733	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	231	28	0	0	exonic	Mtr	nonsynonymous SNV	Mtr:NM_001081128:exon21:c.A2206T:p.I736F	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9999982	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr13	12429781	12A2p6	cell line	sgMsh2	12429781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	228	64	8	0.125	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon33:c.T4611C:p.G1537G	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9993492	GTG	synonymous	GTG	8	GTGGTGGT	NA
M6	chr13	13730347	12A2p6	cell line	sgMsh2	13730347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	121	33	7	0.212121212	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon42:c.A9608G:p.K3203R	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	13759442	12A2p6	cell line	sgMsh2	13759442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	129	15	0	0	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon48:c.T10724C:p.I3575T	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr13	14014753	12A2p6	cell line	sgMsh2	14014753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	146	48	16	0.333333333	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon5:c.A442T:p.I148F	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.5933592	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr13	15660914	12A2p6	cell line	sgMsh2	15660914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	60	3	2	0.666666667	exonic	Gli3	nonsynonymous SNV	Gli3:NM_008130:exon9:c.A1276G:p.T426A	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9971478	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	16027074	12A2p6	cell line	sgMsh2	16027074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	98	12	0	0	exonic	Inhba	nonsynonymous SNV	Inhba:NM_008380:exon5:c.A1220C:p.N407T	13qA1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	AAC	nonsynonymous	CAT	8	CATCATCA	NA
M6	chr13	19630076	12A2p6	cell line	sgMsh2	19630076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	131	0	0	NA	exonic	Sfrp4	nonsynonymous SNV	Sfrp4:NM_016687:exon5:c.C802T:p.L268F	13qA2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999737	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	20979491	12A2p6	cell line	sgMsh2	20979491	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	225	0	0	NA	exonic	Aoah	frameshift deletion	Aoah:NM_012054:exon13:c.963delT:p.L322fs*0	13qA2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr13	21013142	12A2p6	cell line	sgMsh2	21013142	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	143	0	0	NA	exonic	Aoah	nonsynonymous SNV	Aoah:NM_012054:exon20:c.A1550G:p.Q517R	13qA2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	4.32E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	21364017	12A2p6	cell line	sgMsh2	21364017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	109	37	13	0.351351351	exonic	Zscan12	nonsynonymous SNV	Zscan12:NM_016684:exon2:c.A368G:p.D123G	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9992879	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	441	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	1.00E-09	GGC	synonymous	NA	NA	NA	NA
M6	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	235	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.999927	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr13	22293996	12A2p6	cell line	sgMsh2	22293996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	314	0	0	NA	exonic	Vmn1r196	synonymous SNV	Vmn1r196:NM_001167541:exon1:c.T804C:p.T268T	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.15E-09	CTA	synonymous	NA	NA	NA	NA
M6	chr13	23163522	12A2p6	cell line	sgMsh2	23163522	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	173	0	0	NA	exonic	Vmn1r219	nonsynonymous SNV	Vmn1r219:NM_134238:exon1:c.T880G:p.C294G	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999835	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr13	23465179	12A2p6	cell line	sgMsh2	23465179	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	114	0	0	NA	exonic	Btn1a1	nonsynonymous SNV	Btn1a1:NM_013483:exon2:c.T2C:p.M1T	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.09109565	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	23478418	12A2p6	cell line	sgMsh2	23478418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	214	1	0	0	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon7:c.T1334C:p.I445T,Btn2a2:NM_001289615:exon8:c.T1361C:p.I454T,Btn2a2:NM_175938:exon8:c.T1361C:p.I454T"	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	23543231	12A2p6	cell line	sgMsh2	23543231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	284	9	4	0.444444444	exonic	H2bc9	nonsynonymous SNV	H2bc9:NM_178197:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.07E-09	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M6	chr13	23574069	12A2p6	cell line	sgMsh2	23574069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	275	0	0	NA	exonic	H2bc7	nonsynonymous SNV	H2bc7:NM_178195:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.94E-09	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M6	chr13	23575860	12A2p6	cell line	sgMsh2	23575860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	152	2	0	0	exonic	H3c4	nonsynonymous SNV	H3c4:NM_178204:exon1:c.A59G:p.Q20R	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	23752398	12A2p6	cell line	sgMsh2	23752398	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.171	188	6	2	0.333333333	exonic	H3c2	nonsynonymous SNV	H3c2:NM_178203:exon1:c.A19T:p.T7S	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9998876	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	23785909	12A2p6	cell line	sgMsh2	23785909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	194	0	0	NA	exonic	Trim38	synonymous SNV	Trim38:NM_001029935:exon2:c.T450C:p.R150R	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9940944	GTG	synonymous	NA	NA	NA	NA
M6	chr13	24677796	12A2p6	cell line	sgMsh2	24677796	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	76	11	0	0	exonic	Ripor2	nonsynonymous SNV	"Ripor2:NM_001080381:exon7:c.T562A:p.F188I,Ripor2:NM_001286100:exon7:c.T487A:p.F163I,Ripor2:NM_029679:exon7:c.T562A:p.F188I,Ripor2:NM_178658:exon7:c.T571A:p.F191I,Ripor2:NM_001286101:exon8:c.T487A:p.F163I"	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9264445	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr13	27245800	12A2p6	cell line	sgMsh2	27245800	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	97	0	0	NA	exonic	Prl3b1	nonsynonymous SNV	Prl3b1:NM_008865:exon3:c.A220C:p.T74P	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.959289	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	27385231	12A2p6	cell line	sgMsh2	27385231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	0	0	NA	exonic	Prl2b1	nonsynonymous SNV	Prl2b1:NM_025532:exon4:c.A383G:p.H128R	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr13	27576975	12A2p6	cell line	sgMsh2	27576975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	152	0	0	NA	exonic	Prl8a1	synonymous SNV	Prl8a1:NM_028477:exon4:c.G273A:p.Q91Q	13qA3.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	GCT	synonymous	NA	NA	NA	NA
M6	chr13	31560116	12A2p6	cell line	sgMsh2	31560116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	44	99	24	0.242424242	exonic	Foxq1	synonymous SNV	Foxq1:NM_008239:exon1:c.T1200C:p.A400A	13qA3.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9918357	CTT	synonymous	NA	NA	NA	NA
M6	chr13	32127986	12A2p6	cell line	sgMsh2	32127986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	116	31	6	0.193548387	exonic	Gmds	synonymous SNV	Gmds:NM_146041:exon5:c.C459A:p.A153A	13qA3.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	AGG	synonymous	NA	NA	NA	NA
M6	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Vardict	2	0.048	91	60	1	0.016666667	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999512	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	38019220	12A2p6	cell line	sgMsh2	38019220	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	85	1	0	0	exonic	Cage1	frameshift deletion	Cage1:NM_027724:exon6:c.1867delG:p.A623Pfs*9	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr13	38944637	12A2p6	cell line	sgMsh2	38944637	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	199	29	2	0.068965517	exonic	Slc35b3	nonsynonymous SNV	"Slc35b3:NM_001170430:exon4:c.A341G:p.Y114C,Slc35b3:NM_001170431:exon4:c.A341G:p.Y114C,Slc35b3:NM_134060:exon4:c.A341G:p.Y114C"	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr13	40094750	12A2p6	cell line	sgMsh2	40094750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	103	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon14:c.T1907C:p.I636T	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	40918635	12A2p6	cell line	sgMsh2	40918635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	226	37	9	0.243243243	exonic	Gcnt2	synonymous SNV	Gcnt2:NM_133219:exon1:c.A753G:p.P251P	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999985	CAC	synonymous	CTCCAC	12	CTCCACCTCCAC	NA
M6	chr13	41316168	12A2p6	cell line	sgMsh2	41316168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	207	53	17	0.320754717	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1508T:p.H503L,Nedd9:NM_001111324:exon6:c.A1508T:p.H503L"	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr13	41316172	12A2p6	cell line	sgMsh2	41316172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	206	53	15	0.283018868	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1504G:p.S502G,Nedd9:NM_001111324:exon6:c.A1504G:p.S502G"	13qA3.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr13	46299456	12A2p6	cell line	sgMsh2	46299456	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	81	0	0	NA	exonic	Stmnd1	nonsynonymous SNV	Stmnd1:NM_001005422:exon5:c.G607A:p.A203T	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9989867	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr13	46830848	12A2p6	cell line	sgMsh2	46830848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	78	23	11	0.47826087	exonic	Kif13a	nonsynonymous SNV	Kif13a:NM_010617:exon6:c.T440C:p.V147A	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991299	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	49061054	12A2p6	cell line	sgMsh2	49061054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	48	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon20:c.C4345T:p.P1449S,Wnk2:NM_001290313:exon20:c.C4345T:p.P1449S,Wnk2:NM_029361:exon20:c.C4345T:p.P1449S"	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9126728	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr13	49461637	12A2p6	cell line	sgMsh2	49461637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	198	48	9	0.1875	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon13:c.T1495C:p.Y499H,Ippk:NM_199056:exon13:c.T1348C:p.Y450H"	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr13	49641245	12A2p6	cell line	sgMsh2	49641245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	61	17	6	0.352941176	exonic	Cenpp	synonymous SNV	Cenpp:NM_025495:exon4:c.T445C:p.L149L	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9973297	AAT	synonymous	NA	NA	NA	NA
M6	chr13	49722263	12A2p6	cell line	sgMsh2	49722263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	118	90	25	0.277777778	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon23:c.G2425A:p.V809I	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.6943814	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr13	50417950	12A2p6	cell line	sgMsh2	50417950	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	70	14	1	0.071428571	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon1:c.A53T:p.E18V	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9831938	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	167	16	1	0.0625	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.08E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	107	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999418	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr13	51442754	12A2p6	cell line	sgMsh2	51442754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	59	0	0	NA	exonic	Shc3	nonsynonymous SNV	Shc3:NM_009167:exon11:c.T1592C:p.F531S	13qA5	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9968211	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr13	53118802	12A2p6	cell line	sgMsh2	53118802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	93	0	0	NA	exonic	Ror2	nonsynonymous SNV	Ror2:NM_013846:exon6:c.C826T:p.L276F	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9993242	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr13	54053932	12A2p6	cell line	sgMsh2	54053932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	165	0	0	NA	exonic	Drd1	nonsynonymous SNV	"Drd1:NM_001291801:exon2:c.T262C:p.F88L,Drd1:NM_010076:exon2:c.T262C:p.F88L"	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999924	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	54214497	12A2p6	cell line	sgMsh2	54214497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	197	0	0	NA	exonic	Hrh2	nonsynonymous SNV	Hrh2:NM_001010973:exon2:c.C491T:p.T164I	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr13	54552616	12A2p6	cell line	sgMsh2	54552616	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	170	121	27	0.223140496	exonic	4833439L19Rik	nonsynonymous SNV	"4833439L19Rik:NM_001252648:exon5:c.T287G:p.F96C,4833439L19Rik:NM_001252647:exon6:c.T593G:p.F198C,4833439L19Rik:NM_001252646:exon7:c.T851G:p.F284C,4833439L19Rik:NM_001252645:exon8:c.T851G:p.F284C,4833439L19Rik:NM_133797:exon9:c.T908G:p.F303C"	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9964787	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr13	54736542	12A2p6	cell line	sgMsh2	54736542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	55	16	3	0.1875	exonic	Cdhr2	nonsynonymous SNV	Cdhr2:NM_001033364:exon32:c.T3889C:p.S1297P	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9960359	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr13	55105459	12A2p6	cell line	sgMsh2	55105459	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	31	13	5	0.384615385	exonic	Zfp346	nonsynonymous SNV	"Zfp346:NM_001378934:exon1:c.A116T:p.E39V,Zfp346:NM_001378935:exon1:c.A116T:p.E39V,Zfp346:NM_012017:exon1:c.A116T:p.E39V"	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9809401	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	55247836	12A2p6	cell line	sgMsh2	55247836	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	79	72	5	0.069444444	exonic	Nsd1	frameshift deletion	Nsd1:NM_008739:exon5:c.3558delT:p.A1187Lfs*18	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
M6	chr13	55472255	12A2p6	cell line	sgMsh2	55472255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	20	2	0	0	exonic	Prr7	synonymous SNV	Prr7:NM_001030296:exon2:c.A231G:p.P77P	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9613148	CAC	synonymous	"CGC, ACCGC"	"13, 11"	"CGCCGCCGCCGCC, ACCGCACCGCA"	NA
M6	chr13	55670331	12A2p6	cell line	sgMsh2	55670331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	90	125	21	0.168	exonic	Ddx46	nonsynonymous SNV	Ddx46:NM_001282055:exon18:c.A2414G:p.D805G	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999606	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	56527283	12A2p6	cell line	sgMsh2	56527283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	113	7	4	0.571428571	exonic;splicing	Fbxl21;Fbxl21	nonsynonymous SNV	Fbxl21:NM_001359807:exon3:c.T446C:p.V149A	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9963506	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr13	57429422	12A2p6	cell line	sgMsh2	57429422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	39	0	0	NA	exonic	Spock1	nonsynonymous SNV	"Spock1:NM_001166463:exon11:c.T1193C:p.L398P,Spock1:NM_001166466:exon12:c.T1199C:p.L400P,Spock1:NM_009262:exon12:c.T1202C:p.L401P"	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9751037	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	59054441	12A2p6	cell line	sgMsh2	59054441	A	G	SNV	Mutect2;Vardict	2	0.048	115	0	0	NA	exonic	Ntrk2	nonsynonymous SNV	"Ntrk2:NM_001025074:exon15:c.A1862G:p.H621R,Ntrk2:NM_001282961:exon15:c.A1862G:p.H621R"	13qB1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999957	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	59718084	12A2p6	cell line	sgMsh2	59718084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	126	0	0	NA	exonic	Spata31d1b	synonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3045G:p.P1015P	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.99996	CAC	synonymous	NA	NA	NA	NA
M6	chr13	59718309	12A2p6	cell line	sgMsh2	59718309	A	C	SNV	Mutect2;Vardict	2	0.05	112	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3270C:p.K1090N	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999877	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	59718988	12A2p6	cell line	sgMsh2	59718988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	94	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.T3949C:p.C1317R	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr13	60801380	12A2p6	cell line	sgMsh2	60801380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	157	0	0	NA	exonic	Ctsll3	synonymous SNV	Ctsll3:NM_027344:exon2:c.A36G:p.L12L	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	CTA	synonymous	NA	NA	NA	NA
M6	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	247	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr13	60935412	12A2p6	cell line	sgMsh2	60935412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	235	2	0	0	exonic	Ctla2a	nonsynonymous SNV	"Ctla2a:NM_001145799:exon4:c.T251C:p.L84P,Ctla2a:NM_007796:exon4:c.T323C:p.L108P"	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9930488	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	61003080	12A2p6	cell line	sgMsh2	61003080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	121	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T565C:p.Y189H,Ctsj:NM_012007:exon5:c.T562C:p.Y188H"	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9640567	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	61003149	12A2p6	cell line	sgMsh2	61003149	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	145	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.C496A:p.L166I,Ctsj:NM_012007:exon5:c.C493A:p.L165I"	13qB2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	83	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9646275	CTA	synonymous	NA	NA	NA	NA
M6	chr13	64793242	12A2p6	cell line	sgMsh2	64793242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	172	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon6:c.A923G:p.D308G	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999907	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr13	65194380	12A2p6	cell line	sgMsh2	65194380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	155	0	0	NA	exonic	Nlrp4f	nonsynonymous SNV	Nlrp4f:NM_175290:exon3:c.A1450G:p.M484V	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	3	8.44E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr13	65284942	12A2p6	cell line	sgMsh2	65284942	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	16	3	0.1875	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon4:c.A245C:p.N82T	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	65296618	12A2p6	cell line	sgMsh2	65296618	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	157	23	5	0.217391304	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon8:c.A1574C:p.E525A	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr13	66956472	12A2p6	cell line	sgMsh2	66956472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	272	138	21	0.152173913	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A407G:p.N136S	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	3.36E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	67207979	12A2p6	cell line	sgMsh2	67207979	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	273	3	0	0	exonic	Zfp455	nonsynonymous SNV	Zfp455:NM_001048204:exon4:c.C1310T:p.T437I	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.21E-09	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Vardict	2	0.031	172	44	2	0.045454545	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	NA	NA	TAG	frameshift	NA	NA	NA	-1
M6	chr13	68584051	12A2p6	cell line	sgMsh2	68584051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	103	17	4	0.235294118	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.C490T:p.L164F,Fastkd3:NM_027123:exon2:c.C490T:p.L164F"	13qB3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	70594889	12A2p6	cell line	sgMsh2	70594889	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	334	60	12	0.2	exonic	Ice1	synonymous SNV	Ice1:NM_144837:exon17:c.A6351G:p.R2117R	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.04E-09	TTC	synonymous	NA	NA	NA	NA
M6	chr13	70602846	12A2p6	cell line	sgMsh2	70602846	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	66	35	6	0.171428571	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5120A:p.S1707N	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9963541	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Vardict	2	0.061	93	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.99769	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr13	70779659	12A2p6	cell line	sgMsh2	70779659	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	110	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon10:c.T1460G:p.I487R	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998949	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	73927936	12A2p6	cell line	sgMsh2	73927936	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	199	32	1	0.03125	exonic	Trip13	stopgain	Trip13:NM_027182:exon6:c.A583T:p.K195X	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr13	74222926	12A2p6	cell line	sgMsh2	74222926	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	72	0	0	NA	exonic	Ahrr	nonsynonymous SNV	"Ahrr:NM_001317351:exon6:c.T290G:p.L97R,Ahrr:NM_009644:exon7:c.T674G:p.L225R"	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987071	CAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M6	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	175	45	3	0.066666667	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.05E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr13	76825249	12A2p6	cell line	sgMsh2	76825249	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	172	0	0	NA	exonic	Mctp1	nonsynonymous SNV	"Mctp1:NM_001377108:exon13:c.A1379C:p.Q460P,Mctp1:NM_030174:exon13:c.A2039C:p.Q680P"	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9999871	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	77051181	12A2p6	cell line	sgMsh2	77051181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	73	33	7	0.212121212	exonic	Slf1	nonsynonymous SNV	Slf1:NM_134071:exon16:c.A2080G:p.T694A	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr13	77245342	12A2p6	cell line	sgMsh2	77245342	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	94	3	0	0	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon5:c.A1112T:p.Q371L	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9978192	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	77323668	12A2p6	cell line	sgMsh2	77323668	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	174	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon16:c.A3191T:p.N1064I	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	AAT	nonsynonymous	AAAGC	12	AAAGCAAAGCAA	NA
M6	chr13	77999635	12A2p6	cell line	sgMsh2	77999635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	171	23	6	0.260869565	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163420:exon7:c.T629C:p.L210S,Fam172a:NM_001163419:exon8:c.T821C:p.L274S,Fam172a:NM_138312:exon9:c.T959C:p.L320S"	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr13	78163545	12A2p6	cell line	sgMsh2	78163545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	33	22	4	0.181818182	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163420:exon9:c.A814G:p.S272G,Fam172a:NM_001163419:exon10:c.A1006G:p.S336G,Fam172a:NM_138312:exon11:c.A1144G:p.S382G"	13qC1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9832599	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	81413124	12A2p6	cell line	sgMsh2	81413124	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	127	2	0	0	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon76:c.C16270T:p.R5424W	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.7364612	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr13	81440140	12A2p6	cell line	sgMsh2	81440140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	163	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon66:c.A13326G:p.P4442P	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999968	CTG	synonymous	NA	NA	NA	NA
M6	chr13	81475027	12A2p6	cell line	sgMsh2	81475027	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	181	0	0	NA	exonic	Adgrv1	stopgain	Adgrv1:NM_054053:exon55:c.C11476T:p.Q3826X	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	TGA	nonsynonymous	NA	NA	NA	NA
M6	chr13	81565046	12A2p6	cell line	sgMsh2	81565046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon16:c.A2961G:p.Q987Q	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	TTT	synonymous	NA	NA	NA	NA
M6	chr13	83575685	12A2p6	cell line	sgMsh2	83575685	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	255	0	0	NA	exonic	Mef2c	frameshift deletion	"Mef2c:NM_001347566:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347567:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347568:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347569:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347573:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347574:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347575:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347576:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347577:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347578:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347579:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347580:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347581:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001170537:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347564:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347571:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347572:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_025282:exon3:c.9delA:p.K5Rfs*6"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr13	84294848	12A2p6	cell line	sgMsh2	84294848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	103	32	3	0.09375	exonic	Tmem161b	nonsynonymous SNV	"Tmem161b:NM_001361908:exon11:c.C1051T:p.L351F,Tmem161b:NM_001361909:exon11:c.C886T:p.L296F,Tmem161b:NM_001361911:exon12:c.C886T:p.L296F,Tmem161b:NM_175187:exon12:c.C1432T:p.L478F"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9979929	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	89704467	12A2p6	cell line	sgMsh2	89704467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	212	12	2	0.166666667	exonic	Vcan	synonymous SNV	"Vcan:NM_001081249:exon7:c.A2373G:p.L791L,Vcan:NM_001134474:exon7:c.A2373G:p.L791L"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTA	synonymous	NA	NA	NA	NA
M6	chr13	92574979	12A2p6	cell line	sgMsh2	92574979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	202	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A988G:p.R330G	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr13	93092203	12A2p6	cell line	sgMsh2	93092203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	165	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.A6376C:p.R2126R	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999972	CTT	synonymous	NA	NA	NA	NA
M6	chr13	93175552	12A2p6	cell line	sgMsh2	93175552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	236	56	2	0.035714286	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon6:c.T639C:p.D213D,Tent2:NM_001361537:exon6:c.T639C:p.D213D,Tent2:NM_133905:exon6:c.T639C:p.D213D"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999991	CAT	synonymous	NA	NA	NA	NA
M6	chr13	93175597	12A2p6	cell line	sgMsh2	93175597	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	184	55	0	0	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_001361537:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_133905:exon6:c.594delT:p.L199Sfs*5"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr13	93346580	12A2p6	cell line	sgMsh2	93346580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	124	37	7	0.189189189	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon3:c.T174C:p.N58N,Homer1:NM_001347598:exon3:c.T174C:p.N58N,Homer1:NM_011982:exon3:c.T174C:p.N58N,Homer1:NM_147176:exon3:c.T174C:p.N58N,Homer1:NM_152134:exon3:c.T222C:p.N74N"	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9974556	ATA	synonymous	NA	NA	NA	NA
M6	chr13	93459675	12A2p6	cell line	sgMsh2	93459675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	161	61	12	0.196721311	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon4:c.T1445C:p.M482T	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9967859	CAT	nonsynonymous	TCA	8	TCATCATC	NA
M6	chr13	93663296	12A2p6	cell line	sgMsh2	93663296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	52	0	0	NA	exonic	Bhmt2	nonsynonymous SNV	Bhmt2:NM_022884:exon6:c.G631T:p.G211W	13qC3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9454873	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr13	95514004	12A2p6	cell line	sgMsh2	95514004	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.244	134	260	34	0.130769231	exonic	F2rl1	synonymous SNV	F2rl1:NM_007974:exon2:c.C369T:p.D123D	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GGT	synonymous	NA	NA	NA	NA
M6	chr13	96652012	12A2p6	cell line	sgMsh2	96652012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	105	193	43	0.222797927	exonic	Hmgcr	nonsynonymous SNV	"Hmgcr:NM_001360165:exon18:c.T2298G:p.D766E,Hmgcr:NM_001360166:exon18:c.T2328G:p.D776E,Hmgcr:NM_008255:exon18:c.T2298G:p.D766E"	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	97175602	12A2p6	cell line	sgMsh2	97175602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	270	59	10	0.169491525	exonic	Gfm2	synonymous SNV	"Gfm2:NM_001271464:exon20:c.A2124G:p.G708G,Gfm2:NM_001271463:exon21:c.A2205G:p.G735G,Gfm2:NM_001271465:exon21:c.A2199G:p.G733G,Gfm2:NM_177266:exon21:c.A2205G:p.G735G"	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.70E-09	GAT	synonymous	NA	NA	NA	NA
M6	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	156	131	3	0.022900763	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.35E-09	ATT	synonymous	NA	NA	NA	NA
M6	chr13	99228945	12A2p6	cell line	sgMsh2	99228945	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	109	0	0	NA	exonic	Zfp366	frameshift deletion	Zfp366:NM_001004149:exon2:c.613delC:p.E207Sfs*24	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr13	99429636	12A2p6	cell line	sgMsh2	99429636	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	174	100	11	0.11	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.A6576G:p.K2192K	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	GTT	synonymous	NA	NA	NA	NA
M6	chr13	100059643	12A2p6	cell line	sgMsh2	100059643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	98	65	11	0.169230769	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon18:c.C3610T:p.P1204S	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997677	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr13	100242802	12A2p6	cell line	sgMsh2	100242802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	377	2	0	0	exonic	Naip5	synonymous SNV	Naip5:NM_010870:exon4:c.C729T:p.Y243Y	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CGT	synonymous	NA	NA	NA	NA
M6	chr13	100684293	12A2p6	cell line	sgMsh2	100684293	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	165	42	9	0.214285714	exonic	Ccdc125	nonsynonymous SNV	"Ccdc125:NM_001168386:exon5:c.A443C:p.N148T,Ccdc125:NM_183115:exon6:c.A521C:p.N174T"	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999972	AAT	nonsynonymous	AAAT	8	AAATAAAT	NA
M6	chr13	102736450	12A2p6	cell line	sgMsh2	102736450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	68	36	0	0	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.G6409A:p.A2137T	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9983167	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	102736962	12A2p6	cell line	sgMsh2	102736962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	172	42	8	0.19047619	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.A5897G:p.K1966R	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9954109	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr13	102751407	12A2p6	cell line	sgMsh2	102751407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	158	49	13	0.265306122	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon25:c.A3493G:p.I1165V	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9998865	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr13	103171523	12A2p6	cell line	sgMsh2	103171523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	73	1	0	0	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon2:c.T391C:p.F131L	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987897	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	103850828	12A2p6	cell line	sgMsh2	103850828	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	135	172	25	0.145348837	exonic	Erbin	nonsynonymous SNV	"Erbin:NM_001005868:exon15:c.C1223A:p.P408H,Erbin:NM_001289473:exon15:c.C1223A:p.P408H,Erbin:NM_001289474:exon15:c.C1223A:p.P408H,Erbin:NM_001289475:exon15:c.C1223A:p.P408H"	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr13	104154329	12A2p6	cell line	sgMsh2	104154329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	190	140	27	0.192857143	exonic	Trappc13	synonymous SNV	"Trappc13:NM_001093759:exon7:c.A513G:p.P171P,Trappc13:NM_001093760:exon7:c.A513G:p.P171P,Trappc13:NM_001360778:exon7:c.A513G:p.P171P,Trappc13:NM_025879:exon7:c.A513G:p.P171P"	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	ATG	synonymous	NA	NA	NA	NA
M6	chr13	104493669	12A2p6	cell line	sgMsh2	104493669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	2	0	0	exonic	Adamts6	nonsynonymous SNV	Adamts6:NM_001081020:exon25:c.A3319G:p.R1107G	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999737	CAG	nonsynonymous	CAGA	8	CAGACAGA	NA
M6	chr13	105444804	12A2p6	cell line	sgMsh2	105444804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	117	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.C551A:p.P184H	13qD1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	2	0.9912524	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr13	107022050	12A2p6	cell line	sgMsh2	107022050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	41	64	13	0.203125	exonic	Kif2a	nonsynonymous SNV	"Kif2a:NM_001145779:exon1:c.T26C:p.I9T,Kif2a:NM_001374727:exon1:c.T26C:p.I9T,Kif2a:NM_001378937:exon1:c.T26C:p.I9T,Kif2a:NM_001378938:exon1:c.T26C:p.I9T,Kif2a:NM_001378940:exon1:c.T26C:p.I9T"	13qD2.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.8011189	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr13	107748230	12A2p6	cell line	sgMsh2	107748230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	95	53	9	0.169811321	exonic	Zswim6	synonymous SNV	Zswim6:NM_145456:exon9:c.A1440G:p.L480L	13qD2.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.7591613	GTA	synonymous	NA	NA	NA	NA
M6	chr13	110061828	12A2p6	cell line	sgMsh2	110061828	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	39	0	0	NA	exonic	Rab3c	nonsynonymous SNV	"Rab3c:NM_001360099:exon5:c.A665C:p.N222T,Rab3c:NM_023852:exon5:c.A671C:p.N224T"	13qD2.1	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9886763	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr13	112532945	12A2p6	cell line	sgMsh2	112532945	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	217	0	0	NA	exonic	Il31ra	nonsynonymous SNV	Il31ra:NM_139299:exon12:c.G1185T:p.E395D	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.03E-09	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr13	112895502	12A2p6	cell line	sgMsh2	112895502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	140	169	41	0.24260355	exonic	Mtrex	nonsynonymous SNV	Mtrex:NM_028151:exon16:c.A1775G:p.H592R	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.6946247	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr13	114869213	12A2p6	cell line	sgMsh2	114869213	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	261	285	24	0.084210526	exonic	Itga2	nonsynonymous SNV	Itga2:NM_008396:exon12:c.A1430G:p.Q477R	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr13	114970490	12A2p6	cell line	sgMsh2	114970490	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	204	198	36	0.181818182	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon24:c.T3064A:p.S1022T	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.999912	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	116301769	12A2p6	cell line	sgMsh2	116301769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	88	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon5:c.G775A:p.G259R	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr13	116305373	12A2p6	cell line	sgMsh2	116305373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	72	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon3:c.T323C:p.V108A	13qD2.2	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Vardict	2	0.035	165	12	2	0.166666667	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.02E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	137	22	5	0.227272727	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9995413	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	7907282	12A2p6	cell line	sgMsh2	7907282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	89	378	72	0.19047619	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon22:c.A3854C:p.N1285T,Flnb:NM_134080:exon22:c.A3854C:p.N1285T"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	151	515	23	0.044660194	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999936	CCT	synonymous	NA	NA	NA	NA
M6	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.096	57	1	0	0	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9150458	CAG	synonymous	NA	NA	NA	NA
M6	chr14	14089403	12A2p6	cell line	sgMsh2	14089403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	104	17	0	0	exonic	Atxn7	synonymous SNV	Atxn7:NM_139227:exon6:c.G918A:p.K306K	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	AGA	synonymous	NA	NA	NA	NA
M6	chr14	14771278	12A2p6	cell line	sgMsh2	14771278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	200	110	28	0.254545455	exonic	Slc4a7	synonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360515:exon15:c.A1992G:p.T664T,Slc4a7:NM_001360516:exon15:c.A1968G:p.T656T,Slc4a7:NM_001360517:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360520:exon15:c.A1953G:p.T651T,Slc4a7:NM_001360504:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360505:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360506:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360508:exon16:c.A2361G:p.T787T,Slc4a7:NM_001360509:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360510:exon16:c.A2322G:p.T774T,Slc4a7:NM_001360511:exon16:c.A2067G:p.T689T,Slc4a7:NM_001360512:exon16:c.A2052G:p.T684T,Slc4a7:NM_001360513:exon16:c.A2028G:p.T676T,Slc4a7:NM_001360514:exon16:c.A2013G:p.T671T"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CAG	synonymous	NA	NA	NA	NA
M6	chr14	14771285	12A2p6	cell line	sgMsh2	14771285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	198	107	23	0.214953271	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360515:exon15:c.A1999G:p.S667G,Slc4a7:NM_001360516:exon15:c.A1975G:p.S659G,Slc4a7:NM_001360517:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360520:exon15:c.A1960G:p.S654G,Slc4a7:NM_001360504:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360505:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360506:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360508:exon16:c.A2368G:p.S790G,Slc4a7:NM_001360509:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360510:exon16:c.A2329G:p.S777G,Slc4a7:NM_001360511:exon16:c.A2074G:p.S692G,Slc4a7:NM_001360512:exon16:c.A2059G:p.S687G,Slc4a7:NM_001360513:exon16:c.A2035G:p.S679G,Slc4a7:NM_001360514:exon16:c.A2020G:p.S674G"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	14774979	12A2p6	cell line	sgMsh2	14774979	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	67	69	19	0.275362319	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360515:exon18:c.T2393A:p.L798H,Slc4a7:NM_001360516:exon18:c.T2369A:p.L790H,Slc4a7:NM_001360517:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360520:exon18:c.T2354A:p.L785H,Slc4a7:NM_001360504:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360505:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360506:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360508:exon19:c.T2762A:p.L921H,Slc4a7:NM_001360509:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360510:exon19:c.T2723A:p.L908H,Slc4a7:NM_001360511:exon19:c.T2468A:p.L823H,Slc4a7:NM_001360512:exon19:c.T2453A:p.L818H,Slc4a7:NM_001360513:exon19:c.T2429A:p.L810H,Slc4a7:NM_001360514:exon19:c.T2414A:p.L805H"	14qA1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	16277879	12A2p6	cell line	sgMsh2	16277879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	106	87	22	0.252873563	exonic	Ngly1	nonsynonymous SNV	"Ngly1:NM_001362432:exon5:c.A673G:p.N225D,Ngly1:NM_001362433:exon5:c.A730G:p.N244D,Ngly1:NM_021504:exon5:c.A730G:p.N244D"	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr14	16423715	12A2p6	cell line	sgMsh2	16423715	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	54	91	2	0.021978022	exonic	Top2b	frameshift deletion	Top2b:NM_009409:exon32:c.4276delA:p.S1428Vfs*40	14qA2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	104	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.9968717	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	20409093	12A2p6	cell line	sgMsh2	20409093	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	97	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon18:c.C2033T:p.T678I,Cfap70:NM_001163639:exon18:c.C2069T:p.T690I,Cfap70:NM_029698:exon19:c.C2201T:p.T734I"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	113	12	0	0	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999948	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	20714697	12A2p6	cell line	sgMsh2	20714697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	76	55	12	0.218181818	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon10:c.A2134G:p.T712A,Zswim8:NM_027996:exon10:c.A2134G:p.T712A,Zswim8:NM_001252082:exon11:c.A2032G:p.T678A"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	20840609	12A2p6	cell line	sgMsh2	20840609	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	135	10	0	0	exonic	Plau	nonsynonymous SNV	Plau:NM_008873:exon9:c.A947C:p.E316A	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9968906	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	21660934	12A2p6	cell line	sgMsh2	21660934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	47	20	8	0.4	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon13:c.A1948G:p.T650A,Kat6b:NM_017479:exon13:c.A1948G:p.T650A"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	21792527	12A2p6	cell line	sgMsh2	21792527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	144	67	23	0.343283582	exonic	Samd8	nonsynonymous SNV	"Samd8:NM_001359953:exon5:c.A916C:p.T306P,Samd8:NM_001359954:exon5:c.A967C:p.T323P,Samd8:NM_026283:exon5:c.A1105C:p.T369P"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	59	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr14	24306945	12A2p6	cell line	sgMsh2	24306945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	91	0	0	NA	exonic	E330034G19Rik	nonsynonymous SNV	"E330034G19Rik:NM_001033214:exon5:c.T743C:p.I248T,E330034G19Rik:NM_001346536:exon5:c.T536C:p.I179T,E330034G19Rik:NM_001379547:exon5:c.T548C:p.I183T"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996312	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.115	55	20	1	0.05	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.8238673	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	25649813	12A2p6	cell line	sgMsh2	25649813	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	36	111	13	0.117117117	exonic	Zmiz1	nonsynonymous SNV	"Zmiz1:NM_001310666:exon12:c.A1376G:p.Y459C,Zmiz1:NM_183208:exon12:c.A1394G:p.Y465C"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	1	0.5693706	TAC	nonsynonymous	ACCC	13	ACCCACCCCCCAC	NA
M6	chr14	27384212	12A2p6	cell line	sgMsh2	27384212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	123	35	8	0.228571429	exonic	Arhgef3	nonsynonymous SNV	"Arhgef3:NM_001289687:exon4:c.A431T:p.K144I,Arhgef3:NM_001289688:exon4:c.A449T:p.K150I,Arhgef3:NM_027871:exon5:c.A452T:p.K151I,Arhgef3:NM_001289686:exon7:c.A512T:p.K171I"	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	AAA	nonsynonymous	A	5	AAAAA	NA
M6	chr14	27481131	12A2p6	cell line	sgMsh2	27481131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	114	32	11	0.34375	exonic	Tasor	nonsynonymous SNV	Tasor:NM_001114879:exon24:c.A4657G:p.I1553V	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	AAT	nonsynonymous	ATTG	8	ATTGATTG	NA
M6	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	125	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.7120825	GAA	nonsynonymous	A	5	AAAAA	NA
M6	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	69	801	30	0.037453184	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9927174	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	30682803	12A2p6	cell line	sgMsh2	30682803	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	212	19	0	0	exonic	Rft1	synonymous SNV	Rft1:NM_177815:exon11:c.T1155C:p.N385N	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1.11E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	82	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr14	31015289	12A2p6	cell line	sgMsh2	31015289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	174	141	13	0.092198582	exonic	Gnl3	stopgain	Gnl3:NM_153547:exon7:c.A631T:p.R211X	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	31151199	12A2p6	cell line	sgMsh2	31151199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	201	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon30:c.G3243A:p.T1081T	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TCG	synonymous	NA	NA	NA	NA
M6	chr14	31157712	12A2p6	cell line	sgMsh2	31157712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	109	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon19:c.T2028C:p.S676S	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	CAC	synonymous	NA	NA	NA	NA
M6	chr14	31270161	12A2p6	cell line	sgMsh2	31270161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	59	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon57:c.A8963G:p.N2988S	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	80	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9477782	AGC	synonymous	NA	NA	NA	NA
M6	chr14	31295595	12A2p6	cell line	sgMsh2	31295595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	90	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon27:c.A4478G:p.D1493G	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr14	31296323	12A2p6	cell line	sgMsh2	31296323	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	87	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon26:c.T4237A:p.W1413R	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	31300760	12A2p6	cell line	sgMsh2	31300760	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	75	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon20:c.A3419C:p.E1140A	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr14	31302344	12A2p6	cell line	sgMsh2	31302344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	75	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon17:c.T2777A:p.I926N	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	31347762	12A2p6	cell line	sgMsh2	31347762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	186	97	24	0.24742268	exonic	Capn7	nonsynonymous SNV	"Capn7:NM_001360187:exon5:c.C410A:p.P137H,Capn7:NM_009796:exon5:c.C542A:p.P181H"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr14	31552962	12A2p6	cell line	sgMsh2	31552962	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	36	0	0	NA	exonic	Colq	nonsynonymous SNV	Colq:NM_009937:exon3:c.T248A:p.L83Q	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9862283	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	32180565	12A2p6	cell line	sgMsh2	32180565	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	52	4	1	0.25	exonic	Timm23	nonsynonymous SNV	Timm23:NM_016897:exon7:c.A620C:p.Q207P	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	32337491	12A2p6	cell line	sgMsh2	32337491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	147	35	7	0.2	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon10:c.A1037G:p.N346S	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	94	30	0	0	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8828593	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	32347610	12A2p6	cell line	sgMsh2	32347610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	64	37	5	0.135135135	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon24:c.T3014C:p.F1005S	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr14	33633039	12A2p6	cell line	sgMsh2	33633039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	100	0	0	NA	exonic	Ptpn20	nonsynonymous SNV	Ptpn20:NM_008978:exon10:c.T1070C:p.V357A	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	34249237	12A2p6	cell line	sgMsh2	34249237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	10	1	0.1	exonic	Shld2	synonymous SNV	"Shld2:NM_001360074:exon5:c.T1690C:p.L564L,Shld2:NM_029389:exon6:c.T1690C:p.L564L"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999977	AAC	synonymous	NA	NA	NA	NA
M6	chr14	35452313	12A2p6	cell line	sgMsh2	35452313	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	80	0	0	NA	exonic	Grid1	stopgain	Grid1:NM_008166:exon12:c.G1911A:p.W637X	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr14	36940587	12A2p6	cell line	sgMsh2	36940587	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.31	142	35	9	0.257142857	exonic	Ccser2	synonymous SNV	"Ccser2:NM_001347502:exon1:c.T639C:p.T213T,Ccser2:NM_027045:exon2:c.T639C:p.T213T"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999873	AAG	synonymous	NA	NA	NA	NA
M6	chr14	38371303	12A2p6	cell line	sgMsh2	38371303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	138	0	0	NA	exonic	Nrg3	stopgain	"Nrg3:NM_001190187:exon9:c.G1605A:p.W535X,Nrg3:NM_008734:exon9:c.G1608A:p.W536X"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr14	39472225	12A2p6	cell line	sgMsh2	39472225	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	25	0	0	NA	exonic	Nrg3	synonymous SNV	"Nrg3:NM_001190187:exon1:c.G576T:p.T192T,Nrg3:NM_001190188:exon1:c.G576T:p.T192T,Nrg3:NM_008734:exon1:c.G576T:p.T192T"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9719233	CCG	synonymous	NA	NA	NA	NA
M6	chr14	40913481	12A2p6	cell line	sgMsh2	40913481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	35	105	34	0.323809524	exonic	Tspan14	nonsynonymous SNV	"Tspan14:NM_001316748:exon6:c.T457C:p.C153R,Tspan14:NM_145928:exon6:c.T457C:p.C153R"	14qB	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9853015	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	128	33	2	0.060606061	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr14	46385728	12A2p6	cell line	sgMsh2	46385728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	30	5	0	0	exonic	Bmp4	synonymous SNV	"Bmp4:NM_001316360:exon2:c.T360C:p.S120S,Bmp4:NM_007554:exon3:c.T360C:p.S120S"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9796647	AAC	synonymous	NA	NA	NA	NA
M6	chr14	46853909	12A2p6	cell line	sgMsh2	46853909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	65	15	8	0.533333333	exonic	Cgrrf1	nonsynonymous SNV	"Cgrrf1:NM_001360454:exon6:c.A886G:p.S296G,Cgrrf1:NM_026832:exon6:c.A889G:p.S297G"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9979485	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	114	24	4	0.166666667	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999193	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr14	47701134	12A2p6	cell line	sgMsh2	47701134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	179	128	31	0.2421875	exonic	Ktn1	nonsynonymous SNV	"Ktn1:NM_001347522:exon19:c.T2282C:p.V761A,Ktn1:NM_008477:exon19:c.T2282C:p.V761A,Ktn1:NM_001293635:exon20:c.T2282C:p.V761A,Ktn1:NM_001347519:exon20:c.T2282C:p.V761A,Ktn1:NM_001347520:exon20:c.T2282C:p.V761A,Ktn1:NM_001347521:exon20:c.T2282C:p.V761A,Ktn1:NM_001347523:exon20:c.T2282C:p.V761A,Ktn1:NM_001347524:exon20:c.T2282C:p.V761A,Ktn1:NM_001347525:exon20:c.T2282C:p.V761A,Ktn1:NM_001347526:exon20:c.T2282C:p.V761A,Ktn1:NM_001347527:exon20:c.T2282C:p.V761A,Ktn1:NM_001347528:exon20:c.T2282C:p.V761A,Ktn1:NM_001379486:exon20:c.T2282C:p.V761A,Ktn1:NM_001379487:exon20:c.T2279C:p.V760A,Ktn1:NM_001379488:exon20:c.T2279C:p.V760A,Ktn1:NM_001379489:exon20:c.T2279C:p.V760A,Ktn1:NM_001379490:exon20:c.T2282C:p.V761A,Ktn1:NM_001379491:exon20:c.T2282C:p.V761A,Ktn1:NM_001379492:exon20:c.T2282C:p.V761A,Ktn1:NM_001379493:exon20:c.T2282C:p.V761A,Ktn1:NM_001379494:exon20:c.T2282C:p.V761A,Ktn1:NM_001379495:exon20:c.T2282C:p.V761A,Ktn1:NM_001293636:exon21:c.T1757C:p.V586A"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999989	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	48168284	12A2p6	cell line	sgMsh2	48168284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	65	5	0	0	exonic	Peli2	synonymous SNV	Peli2:NM_033602:exon2:c.A165G:p.K55K	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	AAC	synonymous	NA	NA	NA	NA
M6	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.739	42	1	0	0	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	3	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M6	chr14	48256095	12A2p6	cell line	sgMsh2	48256095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	6	1	0.166666667	exonic	Peli2	nonsynonymous SNV	Peli2:NM_033602:exon6:c.A773C:p.D258A	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	48658834	12A2p6	cell line	sgMsh2	48658834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	115	0	0	NA	exonic	Otx2	synonymous SNV	"Otx2:NM_001360226:exon3:c.T766C:p.L256L,Otx2:NM_144841:exon3:c.T742C:p.L248L,Otx2:NM_001286483:exon4:c.T742C:p.L248L,Otx2:NM_001360225:exon4:c.T766C:p.L256L,Otx2:NM_001286481:exon5:c.T766C:p.L256L,Otx2:NM_001286482:exon5:c.T742C:p.L248L"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	AAG	synonymous	NA	NA	NA	NA
M6	chr14	49074099	12A2p6	cell line	sgMsh2	49074099	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	173	33	10	0.303030303	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon2:c.A625C:p.I209L,Ap5m1:NM_144535:exon2:c.A625C:p.I209L"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	GAT	nonsynonymous	ATTTCT	14	ATTTCTATTTCTAT	NA
M6	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	221	32	1	0.03125	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	107	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.09955782	TAA	synonymous	NA	NA	NA	NA
M6	chr14	50360968	12A2p6	cell line	sgMsh2	50360968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	264	0	0	NA	exonic	Tlr11	frameshift deletion	Tlr11:NM_205819:exon2:c.410delT:p.F139Lfs*8	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M6	chr14	50393400	12A2p6	cell line	sgMsh2	50393400	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	157	0	0	NA	exonic	Olfr736	frameshift deletion	Olfr736:NM_146666:exon1:c.643delT:p.Y217Ifs*7	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	264	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999983	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr14	50414187	12A2p6	cell line	sgMsh2	50414187	-	T	Insertion	Strelka2;Vardict	2	0.1659	217	0	0	NA	exonic	Olfr738	frameshift insertion	Olfr738:NM_146420:exon1:c.643dupT:p.I218Yfs*51	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.890013904	NA	NA	CAT	frameshift	T	9	TTTTTTTTT	1
M6	chr14	50767276	12A2p6	cell line	sgMsh2	50767276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	94	42	4	0.095238095	exonic	Ttc5	nonsynonymous SNV	"Ttc5:NM_001360545:exon8:c.T626G:p.L209W,Ttc5:NM_001080949:exon9:c.T1070G:p.L357W"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr14	50793705	12A2p6	cell line	sgMsh2	50793705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	103	0	0	NA	exonic	Ccnb1ip1	synonymous SNV	Ccnb1ip1:NM_001111119:exon2:c.T150C:p.A50A	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	AAG	synonymous	NA	NA	NA	NA
M6	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Vardict	2	0.055	96	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.999719	CGT	synonymous	NA	NA	NA	NA
M6	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	83	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	140	200	51	0.255	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999855	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M6	chr14	52215181	12A2p6	cell line	sgMsh2	52215181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	186	88	20	0.227272727	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon19:c.A3880G:p.I1294V	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	74	103	2	0.019417476	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr14	52226039	12A2p6	cell line	sgMsh2	52226039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	59	89	21	0.235955056	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon9:c.A2147G:p.E716G	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	TTC	nonsynonymous	TACT	9	TACTTACTT	NA
M6	chr14	52315565	12A2p6	cell line	sgMsh2	52315565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	111	14	1	0.071428571	exonic	Sall2	nonsynonymous SNV	"Sall2:NM_001244916:exon2:c.A166G:p.T56A,Sall2:NM_015772:exon2:c.A172G:p.T58A"	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	3	0.5050979	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	52450765	12A2p6	cell line	sgMsh2	52450765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	202	0	0	NA	exonic	Olfr1509	synonymous SNV	Olfr1509:NM_020514:exon1:c.T351C:p.I117I	14qC2	chr14-3072210-52852156	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTA	synonymous	NA	NA	NA	NA
M6	chr14	54439978	12A2p6	cell line	sgMsh2	54439978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	48	287	79	0.275261324	exonic	Mmp14	nonsynonymous SNV	Mmp14:NM_008608:exon9:c.A1375T:p.I459F	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9937198	AAT	nonsynonymous	GGAA	8	GGAAGGAA	NA
M6	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	71	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.998619	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	54642734	12A2p6	cell line	sgMsh2	54642734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	37	191	30	0.157068063	exonic	Acin1	synonymous SNV	"Acin1:NM_001242605:exon12:c.C1692T:p.R564R,Acin1:NM_001242606:exon12:c.C1653T:p.R551R,Acin1:NM_001085472:exon13:c.C1740T:p.R580R,Acin1:NM_019567:exon13:c.C1899T:p.R633R,Acin1:NM_001374770:exon18:c.C3891T:p.R1297R,Acin1:NM_001085473:exon19:c.C3975T:p.R1325R,Acin1:NM_023190:exon19:c.C4011T:p.R1337R"	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9870974	GGC	synonymous	NA	NA	NA	NA
M6	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	90	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9962887	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Vardict	2	0.109	48	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	2	0.8270282	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	54946434	12A2p6	cell line	sgMsh2	54946434	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	62	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon34:c.A5042C:p.N1681T,Myh6:NM_010856:exon34:c.A5042C:p.N1681T"	14qC2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	55065991	12A2p6	cell line	sgMsh2	55065991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	58	17	2	0.117647059	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A4535G:p.Q1512R	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9967463	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	55234674	12A2p6	cell line	sgMsh2	55234674	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	97	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.T21C:p.P7P	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997518	CTA	synonymous	NA	NA	NA	NA
M6	chr14	55576701	12A2p6	cell line	sgMsh2	55576701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	50	0	0	NA	exonic	Fitm1	nonsynonymous SNV	Fitm1:NM_026808:exon2:c.T653C:p.L218P	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.966339	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	55651469	12A2p6	cell line	sgMsh2	55651469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	98	1	1	1	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon3:c.A451G:p.S151G,Tssk4:NM_001253889:exon3:c.A451G:p.S151G"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	CAG	nonsynonymous	C	5	CCCCC	NA
M6	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Vardict	2	0.059	128	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.99987	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	126	36	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999635	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	56796690	12A2p6	cell line	sgMsh2	56796690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	100	48	9	0.1875	exonic	Zmym5	nonsynonymous SNV	"Zmym5:NM_001253752:exon7:c.A1063G:p.M355V,Zmym5:NM_001253753:exon7:c.A1063G:p.M355V,Zmym5:NM_144842:exon7:c.A1063G:p.M355V"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997965	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr14	56804452	12A2p6	cell line	sgMsh2	56804452	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	83	59	5	0.084745763	exonic	Zmym5	frameshift deletion	"Zmym5:NM_001253752:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_001253753:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_144842:exon3:c.368delA:p.N123Mfs*17"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr14	56959772	12A2p6	cell line	sgMsh2	56959772	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	148	120	22	0.183333333	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon25:c.T3996A:p.S1332R,Zmym2:NM_029498:exon25:c.T3996A:p.S1332R"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999915	GTT	nonsynonymous	GTTCTA	12	GTTCTAGTTCTA	NA
M6	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	148	9	0	0	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.996862	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr14	57480762	12A2p6	cell line	sgMsh2	57480762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	138	13	6	0.461538462	exonic	Ift88	synonymous SNV	Ift88:NM_009376:exon19:c.C1791T:p.Y597Y	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	ACG	synonymous	NA	NA	NA	NA
M6	chr14	59413492	12A2p6	cell line	sgMsh2	59413492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	101	13	2	0.153846154	exonic	Gm45935;Setdb2	synonymous SNV	"Setdb2:NM_001320721:exon8:c.A1275G:p.K425K,Setdb2:NM_001320720:exon9:c.A1341G:p.K447K,Gm45935:NM_001320725:exon9:c.A1341G:p.K447K"	14qC3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	CTT	synonymous	NA	NA	NA	NA
M6	chr14	61204235	12A2p6	cell line	sgMsh2	61204235	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	164	2	0	0	exonic	Sacs	synonymous SNV	Sacs:NM_015788:exon10:c.T3729C:p.S1243S	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999778	GTG	synonymous	NA	NA	NA	NA
M6	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	224	5	0	0	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999988	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M6	chr14	63036057	12A2p6	cell line	sgMsh2	63036057	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	144	0	0	NA	exonic	Defb30	nonsynonymous SNV	Defb30:NM_001039566:exon2:c.T103C:p.C35R	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	64861558	12A2p6	cell line	sgMsh2	64861558	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	233	33	2	0.060606061	exonic	Hmbox1	frameshift deletion	"Hmbox1:NM_001347626:exon5:c.655delA:p.R219Gfs*17,Hmbox1:NM_001347627:exon5:c.655delA:p.R219Gfs*17,Hmbox1:NM_177338:exon5:c.655delA:p.R219Gfs*17"	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr14	65076263	12A2p6	cell line	sgMsh2	65076263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	75	23	5	0.217391304	exonic	Extl3	nonsynonymous SNV	"Extl3:NM_001360385:exon2:c.T1469G:p.V490G,Extl3:NM_018788:exon3:c.T1469G:p.V490G"	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	115	31288	9717	0.310566351	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999244	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	66143923	12A2p6	cell line	sgMsh2	66143923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	186	0	0	NA	exonic	Chrna2	synonymous SNV	Chrna2:NM_144803:exon4:c.T228C:p.D76D	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	ATG	synonymous	NA	NA	NA	NA
M6	chr14	66297304	12A2p6	cell line	sgMsh2	66297304	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	130	33	0.253846154	exonic	Trim35	nonsynonymous SNV	Trim35:NM_029979:exon1:c.G235A:p.A79T	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9753155	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Vardict	2	0.064	147	22	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr14	68124785	12A2p6	cell line	sgMsh2	68124785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	13	0	0	NA	exonic	Nefm	nonsynonymous SNV	Nefm:NM_008691:exon1:c.A29G:p.N10S	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9390095	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	68579175	12A2p6	cell line	sgMsh2	68579175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	46	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon3:c.T263C:p.V88A	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	AAC	nonsynonymous	A	5	AAAAA	NA
M6	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	134	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999985	TAT	synonymous	NA	NA	NA	NA
M6	chr14	70139642	12A2p6	cell line	sgMsh2	70139642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	91	50	11	0.22	exonic	Ccar2	nonsynonymous SNV	Ccar2:NM_146055:exon19:c.A2368C:p.K790Q	14qD2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	70421637	12A2p6	cell line	sgMsh2	70421637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	53	0	0	NA	exonic	Piwil2	synonymous SNV	"Piwil2:NM_001364321:exon5:c.T651C:p.S217S,Piwil2:NM_021308:exon5:c.T438C:p.S146S"	14qD2	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9948339	AAC	synonymous	NA	NA	NA	NA
M6	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	55	40	4	0.1	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7500275	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	141	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.999767	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Vardict	2	0.037	146	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.84E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr14	75206279	12A2p6	cell line	sgMsh2	75206279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	95	5	0	0	exonic	Lcp1	nonsynonymous SNV	"Lcp1:NM_001247984:exon7:c.A734C:p.N245T,Lcp1:NM_008879:exon8:c.A734C:p.N245T"	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr14	75206283	12A2p6	cell line	sgMsh2	75206283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	91	5	0	0	exonic	Lcp1	synonymous SNV	"Lcp1:NM_001247984:exon7:c.A738G:p.E246E,Lcp1:NM_008879:exon8:c.A738G:p.E246E"	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	AAG	synonymous	NA	NA	NA	NA
M6	chr14	78307833	12A2p6	cell line	sgMsh2	78307833	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	16	0	0	NA	exonic	Tnfsf11	synonymous SNV	Tnfsf11:NM_011613:exon1:c.C57T:p.G19G	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9499796	TGC	synonymous	NA	NA	NA	NA
M6	chr14	79661991	12A2p6	cell line	sgMsh2	79661991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	70	0	0	NA	exonic	Cnmd	synonymous SNV	"Cnmd:NM_001310655:exon1:c.A21G:p.K7K,Cnmd:NM_010701:exon1:c.A21G:p.K7K"	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	CTT	synonymous	NA	NA	NA	NA
M6	chr14	84447137	12A2p6	cell line	sgMsh2	84447137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.A1043G:p.N348S	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	84448194	12A2p6	cell line	sgMsh2	84448194	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	135	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G2100T:p.W700C	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr14	84448627	12A2p6	cell line	sgMsh2	84448627	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	87	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.C2533T:p.P845S	14qD3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr14	87472219	12A2p6	cell line	sgMsh2	87472219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	27	8	0.296296296	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon4:c.T336C:p.S112S,Tdrd3:NM_172605:exon4:c.T336C:p.S112S"	14qE1	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTT	synonymous	NA	NA	NA	NA
M6	chr14	101458136	12A2p6	cell line	sgMsh2	101458136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	85	3	0	0	exonic	Tbc1d4	synonymous SNV	Tbc1d4:NM_001081278:exon14:c.T2676G:p.P892P	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	GAG	synonymous	NA	NA	NA	NA
M6	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	227	60	4	0.066666667	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	1.14E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	103177262	12A2p6	cell line	sgMsh2	103177262	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	162	0	0	NA	exonic	Mycbp2	frameshift deletion	Mycbp2:NM_207215:exon53:c.7713delT:p.Q2573Rfs*13	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr14	103248510	12A2p6	cell line	sgMsh2	103248510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	79	28	7	0.25	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon22:c.T3114C:p.A1038A	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991854	GAG	synonymous	NA	NA	NA	NA
M6	chr14	104479274	12A2p6	cell line	sgMsh2	104479274	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	109	30	7	0.233333333	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T1662G:p.G554G	14qE2.3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	AAC	synonymous	NA	NA	NA	NA
M6	chr14	108912978	12A2p6	cell line	sgMsh2	108912978	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	124	0	0	NA	exonic	Slitrk1	synonymous SNV	Slitrk1:NM_199065:exon1:c.G300T:p.G100G	14qE3	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.8832871	CCC	synonymous	C	5	CCCCC	NA
M6	chr14	115552293	12A2p6	cell line	sgMsh2	115552293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	98	0	0	NA	exonic	Gpc5	synonymous SNV	Gpc5:NM_175500:exon6:c.T1359C:p.P453P	14qE4	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	CTG	synonymous	NA	NA	NA	NA
M6	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	140	1	0	0	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9996063	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	193	341	20	0.058651026	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	0.8119711	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr14	122476082	12A2p6	cell line	sgMsh2	122476082	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.429	6	0	0	NA	exonic	Zic2	nonsynonymous SNV	Zic2:NM_009574:exon1:c.A407G:p.H136R	14qE5	chr14-53294676-123291781	4	3	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.09012321	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr14	123293438	12A2p6	cell line	sgMsh2	123293438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	206	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon37:c.A4187G:p.H1396R	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr14	123299215	12A2p6	cell line	sgMsh2	123299215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	70	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon32:c.A3623G:p.Q1208R	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.097	94	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	200	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	4057686	12A2p6	cell line	sgMsh2	4057686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	247	188	5	0.026595745	exonic	Oxct1	synonymous SNV	Oxct1:NM_024188:exon6:c.T582C:p.G194G	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999961	GTC	synonymous	NA	NA	NA	NA
M6	chr15	6483221	12A2p6	cell line	sgMsh2	6483221	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	79	0	0	NA	exonic	C9	nonsynonymous SNV	"C9:NM_001368420:exon6:c.A784G:p.T262A,C9:NM_013485:exon6:c.A784G:p.T262A,C9:NM_001368421:exon7:c.A658G:p.T220A"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9464014	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	6794098	12A2p6	cell line	sgMsh2	6794098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	92	36	5	0.138888889	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon35:c.A4755G:p.S1585S	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9927454	CAG	synonymous	CAGC	8	CAGCCAGC	NA
M6	chr15	6827115	12A2p6	cell line	sgMsh2	6827115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	132	5	2	0.4	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon11:c.T1550C:p.M517T,Osmr:NM_011019:exon11:c.T1550C:p.M517T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	7185572	12A2p6	cell line	sgMsh2	7185572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	123	20	1	0.05	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.T2159C:p.I720T,Lifr:NM_013584:exon16:c.T2159C:p.I720T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr15	8042785	12A2p6	cell line	sgMsh2	8042785	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	86	65	16	0.246153846	exonic	Wdr70	synonymous SNV	Wdr70:NM_001081402:exon7:c.C621T:p.Y207Y	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CGT	synonymous	NA	NA	NA	NA
M6	chr15	8176258	12A2p6	cell line	sgMsh2	8176258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	169	5	0	0	exonic	Cplane1	synonymous SNV	Cplane1:NM_001162906:exon6:c.T477C:p.G159G	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GTC	synonymous	NA	NA	NA	NA
M6	chr15	8186270	12A2p6	cell line	sgMsh2	8186270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	181	14	3	0.214285714	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon11:c.T1309C:p.S437P	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.9623149	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr15	8201354	12A2p6	cell line	sgMsh2	8201354	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	129	18	0	0	exonic	Cplane1	frameshift deletion	Cplane1:NM_001162906:exon18:c.3114delT:p.F1039Lfs*12	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6	chr15	8228693	12A2p6	cell line	sgMsh2	8228693	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	47	11	4	0.363636364	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon34:c.C6422T:p.P2141L	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr15	8318397	12A2p6	cell line	sgMsh2	8318397	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	148	89	18	0.202247191	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon32:c.C5810T:p.T1937I,Nipbl:NM_201232:exon32:c.C5810T:p.T1937I"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr15	8351084	12A2p6	cell line	sgMsh2	8351084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	119	90	15	0.166666667	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon10:c.A2223G:p.E741E,Nipbl:NM_201232:exon10:c.A2223G:p.E741E"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	CTT	synonymous	GGCC	8	GGCCGGCC	NA
M6	chr15	8650879	12A2p6	cell line	sgMsh2	8650879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	122	0	0	NA	exonic	Slc1a3	nonsynonymous SNV	Slc1a3:NM_148938:exon4:c.C494T:p.T165I	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999524	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr15	10393753	12A2p6	cell line	sgMsh2	10393753	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	292	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon11:c.A1216C:p.S406R,Agxt2:NM_001310735:exon11:c.A1132C:p.S378R,Agxt2:NM_001310736:exon11:c.A1129C:p.S377R"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	CAG	nonsynonymous	CTTCA	10	CTTCACTTCA	NA
M6	chr15	10492812	12A2p6	cell line	sgMsh2	10492812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	257	69	10	0.144927536	exonic	Rad1	nonsynonymous SNV	"Rad1:NM_001289447:exon5:c.A614G:p.K205R,Rad1:NM_001289448:exon5:c.A614G:p.K205R,Rad1:NM_011232:exon5:c.A614G:p.K205R"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	7.37E-09	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr15	10988924	12A2p6	cell line	sgMsh2	10988924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	73	19	7	0.368421053	exonic	Amacr	nonsynonymous SNV	Amacr:NM_008537:exon4:c.T715C:p.F239L	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	119	30	6	0.2	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	12339738	12A2p6	cell line	sgMsh2	12339738	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	264	395	29	0.073417722	exonic	Golph3	frameshift deletion	Golph3:NM_025673:exon2:c.336delA:p.S114Vfs*2	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr15	12373410	12A2p6	cell line	sgMsh2	12373410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	129	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A6638G:p.K2213R	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	12374447	12A2p6	cell line	sgMsh2	12374447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	95	0	0	NA	exonic	Pdzd2	synonymous SNV	Pdzd2:NM_001081064:exon21:c.A5601G:p.S1867S	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9983206	GTG	synonymous	NA	NA	NA	NA
M6	chr15	12883238	12A2p6	cell line	sgMsh2	12883238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	114	151	40	0.264900662	exonic	Drosha	synonymous SNV	"Drosha:NM_001130149:exon18:c.T2436C:p.T812T,Drosha:NM_026799:exon18:c.T2436C:p.T812T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	CTG	synonymous	CAAA	9	CAAACAAAC	NA
M6	chr15	16848552	12A2p6	cell line	sgMsh2	16848552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	111	0	0	NA	exonic	Cdh9	synonymous SNV	Cdh9:NM_009869:exon8:c.C1317T:p.I439I	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	TCT	synonymous	NA	NA	NA	NA
M6	chr15	21358976	12A2p6	cell line	sgMsh2	21358976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	147	0	0	NA	exonic	Cdh12	nonsynonymous SNV	Cdh12:NM_001008420:exon3:c.A485G:p.D162G	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M6	chr15	22714533	12A2p6	cell line	sgMsh2	22714533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	285	0	0	NA	exonic	Hnrnpa1l2-ps2	nonsynonymous SNV	Hnrnpa1l2-ps2:NM_001165971:exon1:c.G298T:p.A100S	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr15	25701571	12A2p6	cell line	sgMsh2	25701571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	128	68	18	0.264705882	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon3:c.T130A:p.Y44N	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	25742429	12A2p6	cell line	sgMsh2	25742429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	93	107	19	0.177570093	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon18:c.A1828G:p.T610A	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	27571642	12A2p6	cell line	sgMsh2	27571642	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	142	474	4	0.008438819	exonic	Ank	synonymous SNV	Ank:NM_020332:exon8:c.G999A:p.A333A	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9997794	CGC	synonymous	NA	NA	NA	NA
M6	chr15	27833070	12A2p6	cell line	sgMsh2	27833070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	84	43	11	0.255813953	exonic	Trio	synonymous SNV	Trio:NM_001081302:exon22:c.A3657G:p.K1219K	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	ATT	synonymous	T	5	TTTTT	NA
M6	chr15	28326571	12A2p6	cell line	sgMsh2	28326571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	113	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon36:c.T5925C:p.P1975P	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999138	CTG	synonymous	NA	NA	NA	NA
M6	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Vardict	2	0.044	145	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	3.01E-08	TTG	synonymous	NA	NA	NA	NA
M6	chr15	28367729	12A2p6	cell line	sgMsh2	28367729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	73	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon50:c.G8259A:p.S2753S	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	CGG	synonymous	NA	NA	NA	NA
M6	chr15	28378421	12A2p6	cell line	sgMsh2	28378421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	117	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon53:c.T8902C:p.F2968L	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M6	chr15	28408355	12A2p6	cell line	sgMsh2	28408355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	137	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon62:c.T10485C:p.G3495G	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	GTG	synonymous	NA	NA	NA	NA
M6	chr15	28419888	12A2p6	cell line	sgMsh2	28419888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	102	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon66:c.T11331C:p.S3777S	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTC	synonymous	NA	NA	NA	NA
M6	chr15	28445079	12A2p6	cell line	sgMsh2	28445079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	176	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon72:c.T12360C:p.H4120H	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9991308	ATG	synonymous	NA	NA	NA	NA
M6	chr15	30647054	12A2p6	cell line	sgMsh2	30647054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	19	0	0	NA	exonic	Ctnnd2	nonsynonymous SNV	"Ctnnd2:NM_001355502:exon7:c.T895C:p.S299P,Ctnnd2:NM_008729:exon7:c.T895C:p.S299P"	15qB2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9587574	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr15	30905701	12A2p6	cell line	sgMsh2	30905701	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	109	0	0	NA	exonic	Ctnnd2	frameshift deletion	"Ctnnd2:NM_001355502:exon15:c.2493delA:p.I834Sfs*8,Ctnnd2:NM_008729:exon15:c.2493delA:p.I834Sfs*8"	15qB2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr15	31616962	12A2p6	cell line	sgMsh2	31616962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	44	27	6	0.222222222	exonic	Atpsckmt	nonsynonymous SNV	"Atpsckmt:NM_026546:exon5:c.A572G:p.D191G,Atpsckmt:NM_001356313:exon6:c.A338G:p.D113G"	15qB2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9918357	GAC	nonsynonymous	ACCAC	10	ACCACACCAC	NA
M6	chr15	33028073	12A2p6	cell line	sgMsh2	33028073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	155	53	7	0.132075472	exonic	Sdc2	synonymous SNV	Sdc2:NM_008304:exon4:c.A336G:p.E112E	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999437	AAG	synonymous	NA	NA	NA	NA
M6	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	232	68	17	0.25	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M6	chr15	34839911	12A2p6	cell line	sgMsh2	34839911	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	162	0	0	NA	exonic	Kcns2	synonymous SNV	"Kcns2:NM_001271704:exon2:c.T1419C:p.D473D,Kcns2:NM_181317:exon2:c.T1419C:p.D473D"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999966	ATG	synonymous	NA	NA	NA	NA
M6	chr15	35372084	12A2p6	cell line	sgMsh2	35372084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	30	6	0.2	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T124G:p.L42V	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	35378909	12A2p6	cell line	sgMsh2	35378909	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	127	34	7	0.205882353	exonic	Vps13b	frameshift deletion	Vps13b:NM_177151:exon3:c.168delT:p.L58fs*0	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr15	35869439	12A2p6	cell line	sgMsh2	35869439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	66	25	6	0.24	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon44:c.A8088G:p.K2696K	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9974458	AAC	synonymous	A	5	AAAAA	NA
M6	chr15	35878713	12A2p6	cell line	sgMsh2	35878713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	147	31	8	0.258064516	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon49:c.A8857G:p.T2953A	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9979702	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	124	22	0	0	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.787399	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	36245599	12A2p6	cell line	sgMsh2	36245599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	102	42	10	0.238095238	exonic	Rnf19a	nonsynonymous SNV	Rnf19a:NM_013923:exon8:c.A1499G:p.N500S	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Vardict	2	0.066	129	3712	235	0.06330819	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9974735	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M6	chr15	38018942	12A2p6	cell line	sgMsh2	38018942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	119	134	14	0.104477612	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon19:c.T2364C:p.S788S,Ubr5:NM_001112721:exon19:c.T2346C:p.S782S"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	CAC	synonymous	NA	NA	NA	NA
M6	chr15	38037822	12A2p6	cell line	sgMsh2	38037822	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	168	156	24	0.153846154	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon9:c.T1092C:p.P364P,Ubr5:NM_001112721:exon9:c.T1074C:p.P358P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999965	CAG	synonymous	NA	NA	NA	NA
M6	chr15	41101450	12A2p6	cell line	sgMsh2	41101450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	52	5	0.096153846	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A1171G:p.K391E,Zfpm2:NM_011766:exon8:c.A1330G:p.K444E"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	AAA	nonsynonymous	A	5	AAAAA	NA
M6	chr15	43511750	12A2p6	cell line	sgMsh2	43511750	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	264	148	39	0.263513514	exonic	Emc2	synonymous SNV	Emc2:NM_025736:exon9:c.T642C:p.Y214Y	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.01E-09	ATT	synonymous	NA	NA	NA	NA
M6	chr15	44405891	12A2p6	cell line	sgMsh2	44405891	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	208	64	10	0.15625	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.C372A:p.S124S,Nudcd1:NM_026149:exon3:c.C372A:p.S124S"	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999994	AGG	synonymous	NA	NA	NA	NA
M6	chr15	44529215	12A2p6	cell line	sgMsh2	44529215	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	249	21	5	0.238095238	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon38:c.G4945A:p.A1649T	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.18E-08	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr15	44547035	12A2p6	cell line	sgMsh2	44547035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	188	24	1	0.041666667	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.T7937G:p.I2646S	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999925	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr15	47607150	12A2p6	cell line	sgMsh2	47607150	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	196	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon64:c.T10129C:p.F3377L	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	47614086	12A2p6	cell line	sgMsh2	47614086	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	124	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon62:c.T10014A:p.S3338R	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999583	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	47657556	12A2p6	cell line	sgMsh2	47657556	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	120	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon53:c.G8391A:p.R2797R	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CCC	synonymous	NA	NA	NA	NA
M6	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	119	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999942	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	47698117	12A2p6	cell line	sgMsh2	47698117	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	108	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon43:c.T6795A:p.L2265L	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	GAA	synonymous	NA	NA	NA	NA
M6	chr15	47755456	12A2p6	cell line	sgMsh2	47755456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	225	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon34:c.T5535C:p.G1845G	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M6	chr15	47857918	12A2p6	cell line	sgMsh2	47857918	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	99	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon28:c.G4628T:p.G1543V	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	TCC	nonsynonymous	CGTC	8	CGTCCGTC	NA
M6	chr15	50831671	12A2p6	cell line	sgMsh2	50831671	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	139	3	0	0	exonic	Trps1	synonymous SNV	"Trps1:NM_001310481:exon3:c.T1227C:p.A409A,Trps1:NM_001310485:exon3:c.T1227C:p.A409A,Trps1:NM_032000:exon3:c.T1215C:p.A405A"	15qC	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9957363	CAG	synonymous	NA	NA	NA	NA
M6	chr15	51964186	12A2p6	cell line	sgMsh2	51964186	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	93	342	21	0.061403509	exonic	Rad21	nonsynonymous SNV	Rad21:NM_009009:exon14:c.A1778C:p.N593T	15qC	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.9999844	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	54598538	12A2p6	cell line	sgMsh2	54598538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	122	306	23	0.075163399	exonic	Mal2	nonsynonymous SNV	Mal2:NM_178920:exon3:c.A428G:p.N143S	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.9950895	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	145	25	1	0.04	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9999565	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr15	57249707	12A2p6	cell line	sgMsh2	57249707	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	106	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon8:c.T1135C:p.L379L,Slc22a22:NM_172378:exon9:c.T1135C:p.L379L"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8991774	AAG	synonymous	NA	NA	NA	NA
M6	chr15	58889378	12A2p6	cell line	sgMsh2	58889378	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	79	24	2	0.083333333	exonic	Rnf139	nonsynonymous SNV	Rnf139:NM_175226:exon1:c.T65G:p.L22R	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991854	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr15	59322881	12A2p6	cell line	sgMsh2	59322881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	217	281	63	0.224199288	exonic	Sqle	synonymous SNV	Sqle:NM_009270:exon4:c.T765C:p.D255D	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M6	chr15	60823463	12A2p6	cell line	sgMsh2	60823463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	53	26	8	0.307692308	exonic	Lratd2	nonsynonymous SNV	Lratd2:NM_001162926:exon2:c.T433A:p.L145M	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9954785	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr15	65845945	12A2p6	cell line	sgMsh2	65845945	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	90	128	12	0.09375	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon9:c.G784A:p.G262R,Efr3a:NM_133766:exon9:c.G892A:p.G298R"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr15	66532791	12A2p6	cell line	sgMsh2	66532791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	133	11	0	0	exonic	Tmem71	synonymous SNV	Tmem71:NM_172514:exon8:c.A747G:p.L249L	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	CTA	synonymous	NA	NA	NA	NA
M6	chr15	66604238	12A2p6	cell line	sgMsh2	66604238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	100	74	16	0.216216216	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon7:c.T719C:p.F240S	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9607918	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	68178774	12A2p6	cell line	sgMsh2	68178774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	73	8	3	0.375	exonic	Zfat	synonymous SNV	"Zfat:NM_001145888:exon7:c.C2397A:p.G799G,Zfat:NM_198644:exon7:c.C2376A:p.G792G"	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987897	AGC	synonymous	NA	NA	NA	NA
M6	chr15	71452455	12A2p6	cell line	sgMsh2	71452455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	238	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon17:c.T3662C:p.I1221T	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.34E-08	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	71462656	12A2p6	cell line	sgMsh2	71462656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	120	0	0	NA	exonic	Fam135b	synonymous SNV	Fam135b:NM_177819:exon13:c.T2688C:p.H896H	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	TAT	synonymous	NA	NA	NA	NA
M6	chr15	71525818	12A2p6	cell line	sgMsh2	71525818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	102	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon6:c.C392T:p.P131L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9997226	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr15	71952562	12A2p6	cell line	sgMsh2	71952562	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	151	0	0	NA	exonic	Col22a1	synonymous SNV	Col22a1:NM_027174:exon13:c.A1632T:p.P544P	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	GTG	synonymous	NA	NA	NA	NA
M6	chr15	73126467	12A2p6	cell line	sgMsh2	73126467	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	164	70	13	0.185714286	exonic	Ago2	synonymous SNV	Ago2:NM_153178:exon7:c.G861A:p.R287R	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	GCC	synonymous	NA	NA	NA	NA
M6	chr15	73303873	12A2p6	cell line	sgMsh2	73303873	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	128	167	38	0.22754491	exonic	Ptk2	nonsynonymous SNV	"Ptk2:NM_001358046:exon10:c.T814A:p.L272M,Ptk2:NM_007982:exon10:c.T814A:p.L272M,Ptk2:NM_001358045:exon11:c.T946A:p.L316M"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	74575898	12A2p6	cell line	sgMsh2	74575898	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	86	0	0	NA	exonic	Adgrb1	synonymous SNV	"Adgrb1:NM_001359759:exon24:c.G1443A:p.T481T,Adgrb1:NM_174991:exon24:c.G3372A:p.T1124T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9701471	CGG	synonymous	NA	NA	NA	NA
M6	chr15	74751320	12A2p6	cell line	sgMsh2	74751320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	106	11	1	0.090909091	exonic	Lynx1	nonsynonymous SNV	Lynx1:NM_011838:exon4:c.T262C:p.Y88H	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	74839366	12A2p6	cell line	sgMsh2	74839366	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	145	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon3:c.A462C:p.K154N	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	75757546	12A2p6	cell line	sgMsh2	75757546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	119	1	0	0	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.T2471C:p.V824A	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	87	17	0.195402299	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.998619	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr15	76059103	12A2p6	cell line	sgMsh2	76059103	A	G	SNV	Mutect2;Vardict	2	0.103	49	32	8	0.25	exonic	Scrib	synonymous SNV	"Scrib:NM_001310542:exon21:c.T2826C:p.P942P,Scrib:NM_001310543:exon21:c.T2826C:p.P942P,Scrib:NM_134089:exon21:c.T2826C:p.P942P"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.09358309	TAG	synonymous	NA	NA	NA	NA
M6	chr15	76072306	12A2p6	cell line	sgMsh2	76072306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	178	167	31	0.185628743	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon6:c.A350G:p.Y117C,Puf60:NM_001378985:exon6:c.A491G:p.Y164C,Puf60:NM_133691:exon6:c.A494G:p.Y165C,Puf60:NM_001378984:exon7:c.A542G:p.Y181C,Puf60:NM_001378986:exon7:c.A473G:p.Y158C,Puf60:NM_028364:exon7:c.A545G:p.Y182C,Puf60:NM_001356629:exon8:c.A524G:p.Y175C"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	76072463	12A2p6	cell line	sgMsh2	76072463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	96	183	39	0.213114754	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon5:c.T274C:p.F92L,Puf60:NM_001378985:exon5:c.T415C:p.F139L,Puf60:NM_133691:exon5:c.T418C:p.F140L,Puf60:NM_001378984:exon6:c.T466C:p.F156L,Puf60:NM_001378986:exon6:c.T397C:p.F133L,Puf60:NM_028364:exon6:c.T469C:p.F157L,Puf60:NM_001356629:exon7:c.T448C:p.F150L"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997349	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	76103687	12A2p6	cell line	sgMsh2	76103687	T	C	SNV	Mutect2;Vardict	2	0.035	695	13	0	0	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A8993G:p.Y2998C	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	181	4	1	0.25	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	76108981	12A2p6	cell line	sgMsh2	76108981	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	91	5	0	0	exonic	Eppk1	synonymous SNV	Eppk1:NM_144848:exon2:c.C3699A:p.G1233G	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TGC	synonymous	NA	NA	NA	NA
M6	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	106	207	56	0.270531401	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	GCG	synonymous	NA	NA	NA	NA
M6	chr15	76175643	12A2p6	cell line	sgMsh2	76175643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	131	24	0.183206107	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.G10246A:p.A3416T,Plec:NM_201385:exon32:c.G10132A:p.A3378T,Plec:NM_201386:exon32:c.G10093A:p.A3365T,Plec:NM_201387:exon32:c.G9688A:p.A3230T,Plec:NM_201388:exon32:c.G9688A:p.A3230T,Plec:NM_201389:exon32:c.G10588A:p.A3530T,Plec:NM_201390:exon32:c.G10063A:p.A3355T,Plec:NM_201391:exon32:c.G10159A:p.A3387T,Plec:NM_201392:exon32:c.G9688A:p.A3230T,Plec:NM_201393:exon32:c.G10180A:p.A3394T,Plec:NM_201394:exon32:c.G10159A:p.A3387T,Plec:NM_001163540:exon33:c.G10603A:p.A3535T,Plec:NM_001163549:exon33:c.G10174A:p.A3392T,Plec:NM_001163542:exon34:c.G10297A:p.A3433T,Plec:NM_001164203:exon34:c.G9688A:p.A3230T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr15	76177019	12A2p6	cell line	sgMsh2	76177019	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	109	183	42	0.229508197	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8870G:p.Y2957C,Plec:NM_201385:exon32:c.A8756G:p.Y2919C,Plec:NM_201386:exon32:c.A8717G:p.Y2906C,Plec:NM_201387:exon32:c.A8312G:p.Y2771C,Plec:NM_201388:exon32:c.A8312G:p.Y2771C,Plec:NM_201389:exon32:c.A9212G:p.Y3071C,Plec:NM_201390:exon32:c.A8687G:p.Y2896C,Plec:NM_201391:exon32:c.A8783G:p.Y2928C,Plec:NM_201392:exon32:c.A8312G:p.Y2771C,Plec:NM_201393:exon32:c.A8804G:p.Y2935C,Plec:NM_201394:exon32:c.A8783G:p.Y2928C,Plec:NM_001163540:exon33:c.A9227G:p.Y3076C,Plec:NM_001163549:exon33:c.A8798G:p.Y2933C,Plec:NM_001163542:exon34:c.A8921G:p.Y2974C,Plec:NM_001164203:exon34:c.A8312G:p.Y2771C"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	76268180	12A2p6	cell line	sgMsh2	76268180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	31	0	0	NA	exonic	Spatc1	synonymous SNV	Spatc1:NM_028852:exon1:c.A9G:p.L3L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9809401	TAC	synonymous	NA	NA	NA	NA
M6	chr15	76453682	12A2p6	cell line	sgMsh2	76453682	A	-	Deletion	Mutect2;Vardict	2	0.049	253	49	0	0	exonic	Bop1	frameshift deletion	Bop1:NM_013481:exon14:c.1899delT:p.F633Lfs*12	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr15	76458086	12A2p6	cell line	sgMsh2	76458086	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	12	4	0.333333333	exonic	Scx	nonsynonymous SNV	Scx:NM_198885:exon1:c.T485G:p.L162R	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.982137	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Vardict	2	0.046	118	11	1	0.090909091	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M6	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Vardict	2	0.05	151	165	1	0.006060606	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr15	76623407	12A2p6	cell line	sgMsh2	76623407	T	A	SNV	Mutect2;Vardict	2	0.036	155	209	4	0.019138756	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.A168T:p.E56D,Vps28:NM_025842:exon6:c.A282T:p.E94D"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.14E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr15	76698051	12A2p6	cell line	sgMsh2	76698051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	4	2	0.5	exonic	Gpt	nonsynonymous SNV	Gpt:NM_182805:exon5:c.T707C:p.V236A	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	76702727	12A2p6	cell line	sgMsh2	76702727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	101	5	1	0.2	exonic	Mfsd3	synonymous SNV	Mfsd3:NM_027122:exon2:c.T766C:p.L256L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	CTT	synonymous	NA	NA	NA	NA
M6	chr15	76708547	12A2p6	cell line	sgMsh2	76708547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	129	6	0	0	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon6:c.T1222C:p.C408R	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	132	26	1	0.038461538	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999988	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	76900788	12A2p6	cell line	sgMsh2	76900788	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	108	81	1	0.012345679	exonic	Commd5	synonymous SNV	Commd5:NM_025536:exon2:c.T384C:p.S128S	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9996721	GTT	synonymous	NA	NA	NA	NA
M6	chr15	76911323	12A2p6	cell line	sgMsh2	76911323	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	90	9	2	0.222222222	exonic	Zfp647	nonsynonymous SNV	"Zfp647:NM_172817:exon5:c.T1136C:p.F379S,Zfp647:NM_001168276:exon6:c.T1136C:p.F379S"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9908554	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr15	77404342	12A2p6	cell line	sgMsh2	77404342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	241	0	0	NA	exonic	Apol9a	nonsynonymous SNV	"Apol9a:NM_001162883:exon3:c.A824G:p.K275R,Apol9a:NM_173786:exon3:c.A824G:p.K275R"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8806799	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	77635321	12A2p6	cell line	sgMsh2	77635321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	178	0	0	NA	exonic	Apol11b	synonymous SNV	Apol11b:NM_001143686:exon4:c.T558C:p.S186S	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	CAG	synonymous	NA	NA	NA	NA
M6	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	169	402	17	0.042288557	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999712	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr15	78781167	12A2p6	cell line	sgMsh2	78781167	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	32	69	10	0.144927536	exonic	Card10	synonymous SNV	Card10:NM_130859:exon14:c.T2085A:p.T695T	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.982137	CAG	synonymous	NA	NA	NA	NA
M6	chr15	78912005	12A2p6	cell line	sgMsh2	78912005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	95	9	2	0.222222222	exonic	Sh3bp1	nonsynonymous SNV	"Sh3bp1:NM_001316686:exon17:c.A1169G:p.N390S,Sh3bp1:NM_001316685:exon18:c.A1742G:p.N581S,Sh3bp1:NM_009164:exon18:c.A1736G:p.N579S"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	6.43E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	79001618	12A2p6	cell line	sgMsh2	79001618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	63	72	13	0.180555556	exonic	Triobp	synonymous SNV	"Triobp:NM_001024716:exon9:c.A1359G:p.Q453Q,Triobp:NM_138579:exon19:c.A5382G:p.Q1794Q,Triobp:NM_001039156:exon20:c.A5520G:p.Q1840Q"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	AAC	synonymous	NA	NA	NA	NA
M6	chr15	79089912	12A2p6	cell line	sgMsh2	79089912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	125	406	79	0.194581281	exonic	Eif3l	nonsynonymous SNV	Eif3l:NM_145139:exon11:c.T1526C:p.L509P	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999961	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	79129918	12A2p6	cell line	sgMsh2	79129918	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	69	24	3	0.125	exonic	Micall1	nonsynonymous SNV	Micall1:NM_177461:exon10:c.A2012T:p.H671L	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	80256356	12A2p6	cell line	sgMsh2	80256356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	150	564	114	0.20212766	exonic	Atf4	nonsynonymous SNV	"Atf4:NM_009716:exon2:c.T58C:p.F20L,Atf4:NM_001287180:exon3:c.T58C:p.F20L"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	CTT	nonsynonymous	C	5	CCCCC	NA
M6	chr15	80956273	12A2p6	cell line	sgMsh2	80956273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	299	110	41	0.372727273	exonic	Adsl	synonymous SNV	Adsl:NM_009634:exon4:c.T463C:p.L155L	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.40E-09	GTT	synonymous	NA	NA	NA	NA
M6	chr15	80961395	12A2p6	cell line	sgMsh2	80961395	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	168	111	0	0	exonic	Adsl	frameshift deletion	Adsl:NM_009634:exon6:c.694delT:p.F232Lfs*26	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	174	1	0	0	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999999	TAT	synonymous	NA	NA	NA	NA
M6	chr15	81623449	12A2p6	cell line	sgMsh2	81623449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	138	109	19	0.174311927	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon11:c.T2058C:p.N686N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	2	0.8836012	ATG	synonymous	NA	NA	NA	NA
M6	chr15	81946849	12A2p6	cell line	sgMsh2	81946849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	47	2	0	0	exonic	Csdc2	synonymous SNV	Csdc2:NM_145473:exon2:c.T96C:p.S32S	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	GTA	synonymous	NA	NA	NA	NA
M6	chr15	82037539	12A2p6	cell line	sgMsh2	82037539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	102	163	47	0.288343558	exonic	Xrcc6	synonymous SNV	Xrcc6:NM_010247:exon12:c.T1599C:p.N533N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998216	ATC	synonymous	NA	NA	NA	NA
M6	chr15	82286498	12A2p6	cell line	sgMsh2	82286498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	184	0	0	NA	exonic	Septin3	nonsynonymous SNV	"Septin3:NM_001368647:exon6:c.A539G:p.D180G,Septin3:NM_001358836:exon7:c.A731G:p.D244G,Septin3:NM_001358837:exon7:c.A731G:p.D244G,Septin3:NM_001368642:exon7:c.A731G:p.D244G,Septin3:NM_001368643:exon7:c.A731G:p.D244G,Septin3:NM_001368644:exon7:c.A692G:p.D231G,Septin3:NM_001368645:exon7:c.A692G:p.D231G,Septin3:NM_001368646:exon7:c.A692G:p.D231G,Septin3:NM_011889:exon7:c.A692G:p.D231G,Septin3:NM_001368784:exon8:c.A2135G:p.D712G,Septin3:NM_001368785:exon8:c.A2135G:p.D712G"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	82558930	12A2p6	cell line	sgMsh2	82558930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	199	0	0	NA	exonic	Cyp2d12	nonsynonymous SNV	"Cyp2d12:NM_001355665:exon7:c.C1039T:p.L347F,Cyp2d12:NM_201360:exon8:c.C1192T:p.L398F"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CCT	nonsynonymous	TCC	9	TCCTCCTCC	NA
M6	chr15	82617507	12A2p6	cell line	sgMsh2	82617507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	176	0	0	NA	exonic	Cyp2d34	synonymous SNV	Cyp2d34:NM_145474:exon5:c.T801C:p.P267P	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9969142	CAG	synonymous	NA	NA	NA	NA
M6	chr15	82854799	12A2p6	cell line	sgMsh2	82854799	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	166	122	25	0.204918033	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.C2450A:p.P817H,Tcf20:NM_013836:exon2:c.C2450A:p.P817H"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999974	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr15	83879517	12A2p6	cell line	sgMsh2	83879517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	168	0	0	NA	exonic	Efcab6	nonsynonymous SNV	"Efcab6:NM_001161629:exon8:c.T1099C:p.F367L,Efcab6:NM_001161628:exon10:c.T1549C:p.F517L,Efcab6:NM_029946:exon27:c.T3613C:p.F1205L"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	271	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	84105443	12A2p6	cell line	sgMsh2	84105443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	27	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T157C:p.Y53H,Sult4a1:NM_013873:exon1:c.T157C:p.Y53H"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9753155	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	84122566	12A2p6	cell line	sgMsh2	84122566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	60	0	0	NA	exonic	Pnpla5	nonsynonymous SNV	Pnpla5:NM_029427:exon2:c.T215C:p.L72P	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.5069155	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	145	285	70	0.245614035	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr15	84702744	12A2p6	cell line	sgMsh2	84702744	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	74	90	2	0.022222222	exonic	Prr5	nonsynonymous SNV	"Prr5:NM_146061:exon8:c.T721C:p.S241P,Prr5:NM_001346662:exon9:c.T694C:p.S232P"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9946236	CTC	nonsynonymous	CCGCTC	12	CCGCTCCCGCTC	NA
M6	chr15	84935251	12A2p6	cell line	sgMsh2	84935251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	133	167	34	0.203592814	exonic	Nup50	nonsynonymous SNV	Nup50:NM_016714:exon5:c.A725G:p.K242R	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999977	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	225	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M6	chr15	85230884	12A2p6	cell line	sgMsh2	85230884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	28	11	0.392857143	exonic	Fbln1	synonymous SNV	"Fbln1:NM_001347088:exon6:c.T636C:p.D212D,Fbln1:NM_010180:exon6:c.T636C:p.D212D"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	ATG	synonymous	NA	NA	NA	NA
M6	chr15	85393384	12A2p6	cell line	sgMsh2	85393384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	182	735	158	0.214965986	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1051C:p.F351L	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	85393457	12A2p6	cell line	sgMsh2	85393457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	201	715	138	0.193006993	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1124C:p.I375T	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	ATC	nonsynonymous	TCTCA	12	TCTCATCTCATC	NA
M6	chr15	85816500	12A2p6	cell line	sgMsh2	85816500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	254	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T5234C:p.V1745A	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	8.77E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	88914616	12A2p6	cell line	sgMsh2	88914616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	80	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon12:c.C1321T:p.P441S,Ttll8:NM_172818:exon12:c.C1915T:p.P639S"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr15	89100895	12A2p6	cell line	sgMsh2	89100895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	110	25	7	0.28	exonic	Tubgcp6	synonymous SNV	Tubgcp6:NM_001163319:exon23:c.T4989C:p.H1663H	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	CAT	synonymous	NA	NA	NA	NA
M6	chr15	89101277	12A2p6	cell line	sgMsh2	89101277	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	130	14	1	0.071428571	exonic	Tubgcp6	stopgain	Tubgcp6:NM_001163319:exon22:c.G4680A:p.W1560X	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	255	21	2	0.095238095	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	172	1	0	0	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999568	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr15	89543125	12A2p6	cell line	sgMsh2	89543125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	86	0	0	NA	exonic	Shank3	synonymous SNV	Shank3:NM_021423:exon19:c.T2382C:p.V794V	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994869	TTG	synonymous	NA	NA	NA	NA
M6	chr15	89569857	12A2p6	cell line	sgMsh2	89569857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	150	0	0	NA	exonic	Acr	synonymous SNV	"Acr:NM_001205049:exon3:c.T396C:p.H132H,Acr:NM_001277245:exon3:c.T228C:p.H76H,Acr:NM_001277246:exon3:c.T228C:p.H76H,Acr:NM_001277247:exon3:c.T270C:p.H90H,Acr:NM_013455:exon3:c.T396C:p.H132H"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	ATG	synonymous	NA	NA	NA	NA
M6	chr15	93501215	12A2p6	cell line	sgMsh2	93501215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	168	18	1	0.055555556	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon8:c.A1731G:p.K577K,Prickle1:NM_001364846:exon8:c.A1731G:p.K577K"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999977	TTT	synonymous	NA	NA	NA	NA
M6	chr15	94291673	12A2p6	cell line	sgMsh2	94291673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	97	0	0	NA	exonic	Adamts20	nonsynonymous SNV	Adamts20:NM_177431:exon29:c.A4298G:p.K1433R	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	94338749	12A2p6	cell line	sgMsh2	94338749	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	87	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon17:c.T2389G:p.S797A,Adamts20:NM_177431:exon17:c.T2389G:p.S797A"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8549978	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	94353613	12A2p6	cell line	sgMsh2	94353613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	90	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon9:c.T1292C:p.L431P,Adamts20:NM_001164786:exon9:c.T1292C:p.L431P,Adamts20:NM_177431:exon9:c.T1292C:p.L431P"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	94355362	12A2p6	cell line	sgMsh2	94355362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	56	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon8:c.T1129A:p.C377S,Adamts20:NM_001164786:exon8:c.T1129A:p.C377S,Adamts20:NM_177431:exon8:c.T1129A:p.C377S"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	94523487	12A2p6	cell line	sgMsh2	94523487	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	214	13	1	0.076923077	exonic	Pus7l	synonymous SNV	Pus7l:NM_172437:exon9:c.C1941A:p.P647P	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999999	GGG	synonymous	G	5	GGGGG	NA
M6	chr15	95094585	12A2p6	cell line	sgMsh2	95094585	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	223	23	7	0.304347826	exonic	Tmem117	synonymous SNV	Tmem117:NM_178789:exon8:c.T1125C:p.V375V	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
M6	chr15	96370823	12A2p6	cell line	sgMsh2	96370823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	148	31	5	0.161290323	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon15:c.A2816G:p.Y939C	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	96691324	12A2p6	cell line	sgMsh2	96691324	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	218	589	21	0.03565365	exonic	Slc38a2	nonsynonymous SNV	"Slc38a2:NM_001355633:exon13:c.A1051G:p.T351A,Slc38a2:NM_175121:exon14:c.A1288G:p.T430A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.01E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	97245269	12A2p6	cell line	sgMsh2	97245269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	179	2	0	0	exonic	Amigo2	nonsynonymous SNV	"Amigo2:NM_178114:exon1:c.A1271G:p.K424R,Amigo2:NM_001164563:exon2:c.A1271G:p.K424R,Amigo2:NM_001164602:exon2:c.A1271G:p.K424R"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999989	TTT	nonsynonymous	TTTGCA	13	TTTGCATTTGCAT	NA
M6	chr15	97245313	12A2p6	cell line	sgMsh2	97245313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	169	2	1	0.5	exonic	Amigo2	synonymous SNV	"Amigo2:NM_178114:exon1:c.A1227T:p.I409I,Amigo2:NM_001164563:exon2:c.A1227T:p.I409I,Amigo2:NM_001164602:exon2:c.A1227T:p.I409I"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999918	CTA	synonymous	NA	NA	NA	NA
M6	chr15	97719565	12A2p6	cell line	sgMsh2	97719565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	152	0	0	NA	exonic	Endou	nonsynonymous SNV	"Endou:NM_008902:exon4:c.A629G:p.N210S,Endou:NM_001168693:exon5:c.A503G:p.N168S"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	98313094	12A2p6	cell line	sgMsh2	98313094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	136	0	0	NA	exonic	Olfr257;Olfr285	nonsynonymous SNV	"Olfr285:NM_001011778:exon1:c.T455C:p.L152P,Olfr257:NM_207554:exon1:c.T455C:p.L152P"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	198	35	1	0.028571429	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.95E-09	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr15	99426064	12A2p6	cell line	sgMsh2	99426064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	62	4	0	0	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2557G:p.T853A	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	99426306	12A2p6	cell line	sgMsh2	99426306	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	7	1	0.142857143	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2315C:p.K772T	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	99510618	12A2p6	cell line	sgMsh2	99510618	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	84	0	0	NA	exonic	Faim2	synonymous SNV	"Faim2:NM_001038658:exon11:c.G732A:p.A244A,Faim2:NM_028224:exon11:c.G768A:p.A256A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9994606	CCG	synonymous	NA	NA	NA	NA
M6	chr15	99524793	12A2p6	cell line	sgMsh2	99524793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	41	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon2:c.A122G:p.E41G,Faim2:NM_028224:exon2:c.A122G:p.E41G"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.009936071	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr15	99628663	12A2p6	cell line	sgMsh2	99628663	G	-	Deletion	Strelka2;Vardict	2	0.2185	119	57	2	0.035087719	exonic	Racgap1	frameshift deletion	"Racgap1:NM_001253808:exon10:c.1018delC:p.L340Wfs*22,Racgap1:NM_001253809:exon10:c.1018delC:p.L340Wfs*22,Racgap1:NM_012025:exon11:c.1018delC:p.L340Wfs*22"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
M6	chr15	99719240	12A2p6	cell line	sgMsh2	99719240	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	124	70	0	0	exonic	Gpd1	nonsynonymous SNV	Gpd1:NM_010271:exon3:c.T326C:p.L109S	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9991104	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr15	99780525	12A2p6	cell line	sgMsh2	99780525	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	166	277	2	0.007220217	exonic	Lima1	synonymous SNV	"Lima1:NM_023063:exon8:c.A1554G:p.A518A,Lima1:NM_001113545:exon11:c.A2034G:p.A678A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.09E-09	TTG	synonymous	NA	NA	NA	NA
M6	chr15	99929889	12A2p6	cell line	sgMsh2	99929889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	107	0	0	NA	exonic	Fam186a	synonymous SNV	Fam186a:NM_028180:exon2:c.G54A:p.R18R	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	GCC	synonymous	NA	NA	NA	NA
M6	chr15	99929906	12A2p6	cell line	sgMsh2	99929906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	94	0	0	NA	exonic	Fam186a	nonsynonymous SNV	Fam186a:NM_028180:exon2:c.T37C:p.F13L	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	172	25	1	0.04	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9999924	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	100312997	12A2p6	cell line	sgMsh2	100312997	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	229	38	0	0	exonic	Mettl7a1	frameshift deletion	Mettl7a1:NM_027334:exon2:c.502delG:p.A169Lfs*35	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	AGGG	8	AGGGAGGG	-1
M6	chr15	100704244	12A2p6	cell line	sgMsh2	100704244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	58	0	0	NA	exonic	Galnt6	synonymous SNV	"Galnt6:NM_001161767:exon5:c.G681A:p.R227R,Galnt6:NM_001161768:exon5:c.G681A:p.R227R,Galnt6:NM_172451:exon5:c.G681A:p.R227R"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9967463	GCC	synonymous	NA	NA	NA	NA
M6	chr15	101568091	12A2p6	cell line	sgMsh2	101568091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	95	0	0	NA	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon7:c.A1238G:p.K413R	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	101624375	12A2p6	cell line	sgMsh2	101624375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	241	0	0	NA	exonic	Gm5414	synonymous SNV	Gm5414:NM_001003670:exon8:c.A1416G:p.P472P	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.93E-08	CTG	synonymous	NA	NA	NA	NA
M6	chr15	102156832	12A2p6	cell line	sgMsh2	102156832	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	203	17	2	0.117647059	exonic	Soat2	stopgain	Soat2:NM_146064:exon6:c.T461A:p.L154X	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr15	102236025	12A2p6	cell line	sgMsh2	102236025	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	28	75	22	0.293333333	exonic	Rarg	synonymous SNV	"Rarg:NM_001042727:exon8:c.G1343A:p.X448X,Rarg:NM_011244:exon10:c.G1376A:p.X459X"	15qF3	chr15-3279130-102454328	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9768578	TCA	synonymous	NA	NA	NA	NA
M6	chr15	102522909	12A2p6	cell line	sgMsh2	102522909	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	54	9	1	0.111111111	exonic	Tarbp2	nonsynonymous SNV	"Tarbp2:NM_001253795:exon6:c.T526A:p.L176M,Tarbp2:NM_009319:exon8:c.T799A:p.L267M"	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr15	102707415	12A2p6	cell line	sgMsh2	102707415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	73	175	24	0.137142857	exonic	Calcoco1	nonsynonymous SNV	Calcoco1:NM_026192:exon15:c.A2030G:p.D677G	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	CCAT	8	CCATCCAT	NA
M6	chr15	102936948	12A2p6	cell line	sgMsh2	102936948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	75	0	0	NA	exonic	Hoxc12	synonymous SNV	Hoxc12:NM_010463:exon1:c.A96G:p.S32S	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6	chr15	102956556	12A2p6	cell line	sgMsh2	102956556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	52	0	0	NA	exonic	Hoxc11	nonsynonymous SNV	Hoxc11:NM_001024842:exon2:c.T770C:p.I257T	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr15	102984095	12A2p6	cell line	sgMsh2	102984095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	48	0	0	NA	exonic	Hoxc9	nonsynonymous SNV	Hoxc9:NM_008272:exon3:c.A739C:p.M247L	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	GATGAA	12	GATGAAGATGAA	NA
M6	chr15	102990879	12A2p6	cell line	sgMsh2	102990879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	75	0	0	NA	exonic	Hoxc8	stopgain	Hoxc8:NM_010466:exon1:c.A100T:p.R34X	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr15	103241519	12A2p6	cell line	sgMsh2	103241519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	246	9	3	0.333333333	exonic	Hnrnpa1	nonsynonymous SNV	"Hnrnpa1:NM_001039129:exon3:c.A206G:p.D69G,Hnrnpa1:NM_010447:exon3:c.A206G:p.D69G"	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr15	103562974	12A2p6	cell line	sgMsh2	103562974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	210	0	0	NA	exonic	Glycam1	synonymous SNV	Glycam1:NM_008134:exon4:c.A366G:p.T122T	15qF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M6	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	141	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr16	4288835	12A2p6	cell line	sgMsh2	4288835	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	146	12	1	0.083333333	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A3125C:p.E1042A,Adcy9:NM_001291910:exon12:c.A2414C:p.E805A"	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	35	11	4	0.363636364	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M6	chr16	4486303	12A2p6	cell line	sgMsh2	4486303	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	147	4	0	0	exonic	Srl	nonsynonymous SNV	"Srl:NM_001347162:exon5:c.T581A:p.I194N,Srl:NM_001361474:exon5:c.T584A:p.I195N,Srl:NM_175347:exon6:c.T1895A:p.I632N"	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	4616855	12A2p6	cell line	sgMsh2	4616855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	240	19	5	0.263157895	exonic	Pam16	synonymous SNV	Pam16:NM_025571:exon4:c.G249A:p.V83V	16qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TCA	synonymous	NA	NA	NA	NA
M6	chr16	4648302	12A2p6	cell line	sgMsh2	4648302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	20	2	0.1	exonic	Vasn	nonsynonymous SNV	Vasn:NM_139307:exon2:c.T112C:p.F38L	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	4765812	12A2p6	cell line	sgMsh2	4765812	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	158	130	17	0.130769231	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon5:c.T743A:p.L248Q,Hmox2:NM_001357050:exon5:c.T827A:p.L276Q,Hmox2:NM_001378999:exon5:c.T800A:p.L267Q,Hmox2:NM_010443:exon5:c.T743A:p.L248Q"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.541840894	2	0.9999828	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	5233830	12A2p6	cell line	sgMsh2	5233830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	19	4	0.210526316	exonic	Alg1	nonsynonymous SNV	Alg1:NM_145362:exon1:c.T181G:p.F61V	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9944928	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	7224509	12A2p6	cell line	sgMsh2	7224509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	69	2	0	0	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.A298G:p.S100G,Rbfox1:NM_001359728:exon2:c.A298G:p.S100G,Rbfox1:NM_001359729:exon2:c.A298G:p.S100G,Rbfox1:NM_183188:exon2:c.A286G:p.S96G,Rbfox1:NM_001359723:exon5:c.A226G:p.S76G,Rbfox1:NM_001359724:exon5:c.A226G:p.S76G,Rbfox1:NM_001359730:exon5:c.A226G:p.S76G,Rbfox1:NM_001359725:exon6:c.A226G:p.S76G,Rbfox1:NM_021477:exon6:c.A226G:p.S76G"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.8977131	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	49	9	1	0.111111111	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.862234	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	8708904	12A2p6	cell line	sgMsh2	8708904	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	63	151	40	0.264900662	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon5:c.T569G:p.V190G	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	10395212	12A2p6	cell line	sgMsh2	10395212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	92	0	0	NA	exonic	Tekt5	nonsynonymous SNV	Tekt5:NM_001291001:exon1:c.T208C:p.S70P	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	10480230	12A2p6	cell line	sgMsh2	10480230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	80	0	0	NA	exonic	Ciita	synonymous SNV	"Ciita:NM_001243760:exon1:c.C87T:p.G29G,Ciita:NM_001302618:exon1:c.C87T:p.G29G"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GCC	synonymous	NA	NA	NA	NA
M6	chr16	10508578	12A2p6	cell line	sgMsh2	10508578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	108	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon8:c.A860G:p.Q287R,Ciita:NM_001243761:exon8:c.A623G:p.Q208R,Ciita:NM_001302618:exon8:c.A863G:p.Q288R,Ciita:NM_007575:exon8:c.A632G:p.Q211R,Ciita:NM_001302619:exon9:c.A560G:p.Q187R"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	11088119	12A2p6	cell line	sgMsh2	11088119	T	C	SNV	Mutect2;Vardict	2	0.047	87	23	1	0.043478261	exonic	Txndc11	nonsynonymous SNV	Txndc11:NM_029582:exon8:c.A1546G:p.T516A	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999454	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr16	11147315	12A2p6	cell line	sgMsh2	11147315	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	88	83	19	0.228915663	exonic	Zc3h7a	synonymous SNV	Zc3h7a:NM_145931:exon16:c.C1953A:p.A651A	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	1	7.50E-09	GGG	synonymous	NA	NA	NA	NA
M6	chr16	11228191	12A2p6	cell line	sgMsh2	11228191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	62	252	42	0.166666667	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon11:c.T1346C:p.M449T,Gspt1:NM_146066:exon11:c.T1349C:p.M450T"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	11313991	12A2p6	cell line	sgMsh2	11313991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	272	0	0	NA	exonic	Tnfrsf17	synonymous SNV	Tnfrsf17:NM_011608:exon1:c.T39C:p.S13S	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.36E-09	GTC	synonymous	NA	NA	NA	NA
M6	chr16	13401031	12A2p6	cell line	sgMsh2	13401031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	228	35	12	0.342857143	exonic	Mrtfb	nonsynonymous SNV	"Mrtfb:NM_153588:exon10:c.A1540C:p.T514P,Mrtfb:NM_001122667:exon12:c.A1573C:p.T525P"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.43E-08	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	13626201	12A2p6	cell line	sgMsh2	13626201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	134	79	7	0.088607595	exonic	Parn	nonsynonymous SNV	"Parn:NM_001358452:exon16:c.T1027C:p.Y343H,Parn:NM_001358453:exon16:c.T1018C:p.Y340H,Parn:NM_028761:exon17:c.T1084C:p.Y362H"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.9438654	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Vardict	2	0.028	174	121	9	0.074380165	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr16	13791967	12A2p6	cell line	sgMsh2	13791967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	122	124	27	0.217741935	exonic	Rrn3	nonsynonymous SNV	Rrn3:NM_001039521:exon8:c.T638G:p.V213G	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999524	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	84	265	36	0.135849057	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.8964912	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	117	142	42	0.295774648	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9982974	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	14152629	12A2p6	cell line	sgMsh2	14152629	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	171	80	23	0.2875	exonic	Marf1	synonymous SNV	Marf1:NM_001081154:exon3:c.A225T:p.P75P	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	CTG	synonymous	NA	NA	NA	NA
M6	chr16	14244891	12A2p6	cell line	sgMsh2	14244891	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	168	0	0	NA	exonic	Myh11	nonsynonymous SNV	"Myh11:NM_001161775:exon8:c.A803G:p.K268R,Myh11:NM_013607:exon8:c.A803G:p.K268R"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	123	38	8	0.210526316	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999657	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M6	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Vardict	2	0.035	158	7	0	0	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.06E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	15705232	12A2p6	cell line	sgMsh2	15705232	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	238	6	2	0.333333333	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon30:c.T3517C:p.C1173R	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.34E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	15862510	12A2p6	cell line	sgMsh2	15862510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	34	20	2	0.1	exonic	Mzt2	synonymous SNV	"Mzt2:NM_029354:exon2:c.T210C:p.A70A,Mzt2:NM_001359003:exon3:c.T210C:p.A70A"	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9843134	GAG	synonymous	NA	NA	NA	NA
M6	chr16	16262686	12A2p6	cell line	sgMsh2	16262686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	128	36	0.28125	exonic	Pkp2	nonsynonymous SNV	Pkp2:NM_026163:exon9:c.C1835T:p.T612I	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr16	16303674	12A2p6	cell line	sgMsh2	16303674	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	74	67	15	0.223880597	exonic	Yars2	nonsynonymous SNV	Yars2:NM_198246:exon1:c.T691A:p.Y231N	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	77	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.6909001	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	17212027	12A2p6	cell line	sgMsh2	17212027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	87	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.C3314T:p.S1105F	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr16	17212648	12A2p6	cell line	sgMsh2	17212648	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.083	75	0	0	NA	exonic	Rimbp3	frameshift insertion	Rimbp3:NM_001033338:exon1:c.3936dupA:p.I1314Nfs*9	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	NA	NA	GGA	frameshift	A	5	AAAAA	1
M6	chr16	17297275	12A2p6	cell line	sgMsh2	17297275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	107	63	4	0.063492063	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon38:c.A4249G:p.T1417A,Pi4ka:NM_001373955:exon38:c.A4432G:p.T1478A"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9904402	GTT	nonsynonymous	GGTT	8	GGTTGGTT	NA
M6	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Vardict	2	0.034	169	59	5	0.084745763	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.01E-09	CTC	synonymous	NA	NA	NA	NA
M6	chr16	17342352	12A2p6	cell line	sgMsh2	17342352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	2	0	0	exonic	Serpind1	nonsynonymous SNV	"Serpind1:NM_001331047:exon4:c.T1112C:p.V371A,Serpind1:NM_008223:exon4:c.T1112C:p.V371A"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr16	17469136	12A2p6	cell line	sgMsh2	17469136	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	185	94	13	0.138297872	exonic	Crkl	synonymous SNV	Crkl:NM_007764:exon2:c.G555A:p.S185S	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	CGC	synonymous	NA	NA	NA	NA
M6	chr16	17640995	12A2p6	cell line	sgMsh2	17640995	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	98	27	5	0.185185185	exonic	Smpd4	synonymous SNV	"Smpd4:NM_001164610:exon15:c.T1494C:p.H498H,Smpd4:NM_001164611:exon15:c.T1491C:p.H497H,Smpd4:NM_001164609:exon16:c.T1533C:p.H511H,Smpd4:NM_029945:exon16:c.T1581C:p.H527H"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	ATG	synonymous	NA	NA	NA	NA
M6	chr16	17652754	12A2p6	cell line	sgMsh2	17652754	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	95	102	4	0.039215686	exonic	Med15	nonsynonymous SNV	"Med15:NM_001040683:exon16:c.T2068C:p.Y690H,Med15:NM_001285886:exon16:c.T1738C:p.Y580H,Med15:NM_001358404:exon16:c.T1975C:p.Y659H,Med15:NM_001285884:exon17:c.T2188C:p.Y730H,Med15:NM_033609:exon17:c.T2188C:p.Y730H"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9647934	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	17849750	12A2p6	cell line	sgMsh2	17849750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	115	141	30	0.212765957	exonic	Dgcr2	nonsynonymous SNV	"Dgcr2:NM_001109750:exon7:c.T835C:p.F279L,Dgcr2:NM_010048:exon7:c.T844C:p.F282L"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	17898798	12A2p6	cell line	sgMsh2	17898798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	113	0	0	NA	exonic	Tssk2	nonsynonymous SNV	Tssk2:NM_009436:exon1:c.T64C:p.S22P	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	71	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	19407757	12A2p6	cell line	sgMsh2	19407757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	247	0	0	NA	exonic	Olfr165	synonymous SNV	Olfr165:NM_146466:exon1:c.T261C:p.L87L	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	1.57E-08	AAA	synonymous	NA	NA	NA	NA
M6	chr16	19487703	12A2p6	cell line	sgMsh2	19487703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	242	0	0	NA	exonic	Olfr166	synonymous SNV	Olfr166:NM_147068:exon1:c.T864C:p.I288I	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.82E-08	TTT	synonymous	NA	NA	NA	NA
M6	chr16	19515290	12A2p6	cell line	sgMsh2	19515290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	116	0	0	NA	exonic	Olfr167	synonymous SNV	Olfr167:NM_146935:exon1:c.A345G:p.A115A	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	ATG	synonymous	NA	NA	NA	NA
M6	chr16	19947087	12A2p6	cell line	sgMsh2	19947087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	142	0	0	NA	exonic	Klhl6	stopgain	Klhl6:NM_183390:exon7:c.T1764A:p.C588X	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9930123	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	20398878	12A2p6	cell line	sgMsh2	20398878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	162	136	18	0.132352941	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon8:c.T1082C:p.V361A	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9982475	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	200	723	35	0.048409405	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999952	CTG	synonymous	NA	NA	NA	NA
M6	chr16	20738726	12A2p6	cell line	sgMsh2	20738726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	52	15	2	0.133333333	exonic	Chrd	synonymous SNV	"Chrd:NM_001278041:exon16:c.T2160C:p.P720P,Chrd:NM_001354996:exon16:c.T2094C:p.P698P,Chrd:NM_009893:exon16:c.T2094C:p.P698P,Chrd:NM_001354995:exon17:c.T657C:p.P219P"	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9884214	CTA	synonymous	NA	NA	NA	NA
M6	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	51	4	0	0	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	21937998	12A2p6	cell line	sgMsh2	21937998	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	64	32	3	0.09375	exonic	Tmem41a	nonsynonymous SNV	Tmem41a:NM_025693:exon3:c.A370C:p.S124R	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9616981	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	150	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.498922803	2	0.9988535	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	23118058	12A2p6	cell line	sgMsh2	23118058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	146	74	7	0.094594595	exonic	Rfc4	nonsynonymous SNV	Rfc4:NM_145480:exon5:c.A296G:p.E99G	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.9836444	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	27444556	12A2p6	cell line	sgMsh2	27444556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	191	216	31	0.143518519	exonic	Ccdc50	synonymous SNV	"Ccdc50:NM_001025615:exon9:c.T759C:p.P253P,Ccdc50:NM_026202:exon10:c.T804C:p.P268P,Ccdc50:NM_001289436:exon11:c.T354C:p.P118P"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	CTA	synonymous	ACC	12	ACCACCACCACC	NA
M6	chr16	28827838	12A2p6	cell line	sgMsh2	28827838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	140	9	0	0	exonic	Mb21d2	synonymous SNV	Mb21d2:NM_177718:exon2:c.A1383G:p.L461L	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	CTA	synonymous	NA	NA	NA	NA
M6	chr16	30260866	12A2p6	cell line	sgMsh2	30260866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	60	0	0	NA	exonic	Cpn2	nonsynonymous SNV	Cpn2:NM_027904:exon2:c.T16C:p.W6R	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	30272931	12A2p6	cell line	sgMsh2	30272931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	184	2	0	0	exonic	Lrrc15	nonsynonymous SNV	Lrrc15:NM_028973:exon2:c.T1589C:p.M530T	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999976	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	31684199	12A2p6	cell line	sgMsh2	31684199	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	70	134	36	0.268656716	exonic	Dlg1	nonsynonymous SNV	"Dlg1:NM_001252433:exon4:c.C223A:p.P75T,Dlg1:NM_001252434:exon4:c.C223A:p.P75T,Dlg1:NM_001252435:exon4:c.C223A:p.P75T,Dlg1:NM_001357282:exon4:c.C223A:p.P75T,Dlg1:NM_007862:exon4:c.C223A:p.P75T"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr16	32084622	12A2p6	cell line	sgMsh2	32084622	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	161	89	23	0.258426966	exonic	Pigx	nonsynonymous SNV	"Pigx:NM_001111025:exon6:c.T620C:p.L207P,Pigx:NM_024464:exon6:c.T626C:p.L209P"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	32291951	12A2p6	cell line	sgMsh2	32291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	151	59	13	0.220338983	exonic	Rnf168	synonymous SNV	Rnf168:NM_027355:exon5:c.T735C:p.A245A	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	CTG	synonymous	NA	NA	NA	NA
M6	chr16	32621228	12A2p6	cell line	sgMsh2	32621228	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	112	162	15	0.092592593	exonic	Tfrc	nonsynonymous SNV	"Tfrc:NM_001357298:exon11:c.G1258T:p.A420S,Tfrc:NM_011638:exon11:c.G1258T:p.A420S"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.6643415	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr16	32680749	12A2p6	cell line	sgMsh2	32680749	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	35	33	4	0.121212121	exonic	Tnk2	nonsynonymous SNV	"Tnk2:NM_001289443:exon4:c.A1364C:p.Q455P,Tnk2:NM_001347185:exon4:c.A1364C:p.Q455P,Tnk2:NM_001110147:exon12:c.A2834C:p.Q945P,Tnk2:NM_016788:exon13:c.A2879C:p.Q960P"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9853015	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	147	2	1	0.5	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999502	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr16	32776913	12A2p6	cell line	sgMsh2	32776913	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	79	8	1	0.125	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon22:c.A9626T:p.N3209I	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.056	277	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	1.54E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	32844553	12A2p6	cell line	sgMsh2	32844553	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	127	30	0	0	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon6:c.A727C:p.S243R,Rubcn:NM_001374776:exon6:c.A544C:p.S182R,Rubcn:NM_172615:exon6:c.A727C:p.S243R"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.5856671	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	32959460	12A2p6	cell line	sgMsh2	32959460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	46	9	0.195652174	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon5:c.T706C:p.C236R,Lrch3:NM_001310672:exon5:c.T706C:p.C236R,Lrch3:NM_001310673:exon5:c.T706C:p.C236R,Lrch3:NM_001310674:exon5:c.T706C:p.C236R"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	TTG	nonsynonymous	TGTT	8	TGTTTGTT	NA
M6	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	218	48	1	0.020833333	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	32975787	12A2p6	cell line	sgMsh2	32975787	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	89	65	13	0.2	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon8:c.G1040A:p.R347K,Lrch3:NM_001310672:exon8:c.G1040A:p.R347K,Lrch3:NM_001310673:exon8:c.G1040A:p.R347K,Lrch3:NM_001310674:exon8:c.G1040A:p.R347K"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr16	33763612	12A2p6	cell line	sgMsh2	33763612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	82	29	3	0.103448276	exonic	Heg1	nonsynonymous SNV	Heg1:NM_175256:exon14:c.A3095C:p.Y1032S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	33975874	12A2p6	cell line	sgMsh2	33975874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	117	2	1	0.5	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon60:c.T8591C:p.L2864P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	33977543	12A2p6	cell line	sgMsh2	33977543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	116	2	1	0.5	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon59:c.G8368A:p.A2790T	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.7106028	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Vardict	2	0.071	76	4	0	0	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9264445	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	34723880	12A2p6	cell line	sgMsh2	34723880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	67	11	5	0.454545455	exonic	Ccdc14	synonymous SNV	Ccdc14:NM_172824:exon13:c.T2751C:p.D917D	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	ATG	synonymous	NA	NA	NA	NA
M6	chr16	35836111	12A2p6	cell line	sgMsh2	35836111	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	115	1	0	0	exonic	Parp14	frameshift deletion	Parp14:NM_001039530:exon16:c.5044delA:p.S1682Vfs*8	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.211	100	1	0	0	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	35863528	12A2p6	cell line	sgMsh2	35863528	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	114	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon4:c.T427A:p.C143S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	36615278	12A2p6	cell line	sgMsh2	36615278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	108	0	0	NA	exonic	Cd86	nonsynonymous SNV	Cd86:NM_019388:exon5:c.T776C:p.L259P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	36752284	12A2p6	cell line	sgMsh2	36752284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	153	0	0	NA	exonic	Slc15a2	synonymous SNV	Slc15a2:NM_021301:exon21:c.T2034C:p.S678S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9986285	CAC	synonymous	NA	NA	NA	NA
M6	chr16	36919605	12A2p6	cell line	sgMsh2	36919605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	152	85	23	0.270588235	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon14:c.G8428T:p.V2810L	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr16	37029420	12A2p6	cell line	sgMsh2	37029420	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	197	8	0	0	exonic	Polq	frameshift deletion	Polq:NM_029977:exon7:c.1035delA:p.K347Nfs*5	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr16	37139968	12A2p6	cell line	sgMsh2	37139968	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.247	132	0	0	NA	exonic	Stxbp5l	frameshift insertion	"Stxbp5l:NM_001114611:exon21:c.2288dupA:p.N763Kfs*1,Stxbp5l:NM_001114612:exon22:c.2459dupA:p.N820Kfs*1,Stxbp5l:NM_001114613:exon22:c.2360dupA:p.N787Kfs*1,Stxbp5l:NM_172440:exon23:c.2531dupA:p.N844Kfs*1"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M6	chr16	37818952	12A2p6	cell line	sgMsh2	37818952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	111	0	0	NA	exonic	Fstl1	nonsynonymous SNV	Fstl1:NM_008047:exon4:c.T211C:p.Y71H	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	CTA	nonsynonymous	ACCT	8	ACCTACCT	NA
M6	chr16	38005795	12A2p6	cell line	sgMsh2	38005795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	62	0	0	NA	exonic	Gpr156	synonymous SNV	Gpr156:NM_153394:exon10:c.T2373C:p.D791D	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9975	ATG	synonymous	NA	NA	NA	NA
M6	chr16	38332185	12A2p6	cell line	sgMsh2	38332185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	143	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T662C:p.L221P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	38332237	12A2p6	cell line	sgMsh2	38332237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	155	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T610C:p.Y204H	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	43982105	12A2p6	cell line	sgMsh2	43982105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	13	2	0.153846154	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon13:c.T1327C:p.F443L,Gramd1c:NM_153528:exon13:c.T1327C:p.F443L,Gramd1c:NM_001359085:exon17:c.T1858C:p.F620L"	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	AAG	nonsynonymous	T	5	TTTTT	NA
M6	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	214	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	44488543	12A2p6	cell line	sgMsh2	44488543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	53	0	0	NA	exonic	Boc	nonsynonymous SNV	Boc:NM_172506:exon15:c.C2605T:p.P869S	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	1	7.86E-05	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr16	45144199	12A2p6	cell line	sgMsh2	45144199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	227	53	11	0.20754717	exonic	Slc35a5	nonsynonymous SNV	"Slc35a5:NM_001356453:exon6:c.A667G:p.T223A,Slc35a5:NM_028756:exon6:c.A670G:p.T224A"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.72E-08	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	45183749	12A2p6	cell line	sgMsh2	45183749	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	186	113	18	0.159292035	exonic	Atg3	nonsynonymous SNV	"Atg3:NM_001356366:exon9:c.T473A:p.V158E,Atg3:NM_026402:exon10:c.T734A:p.V245E"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	45547695	12A2p6	cell line	sgMsh2	45547695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	157	0	0	NA	exonic	Slc9c1	nonsynonymous SNV	Slc9c1:NM_198106:exon6:c.T646A:p.F216I	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr16	48994304	12A2p6	cell line	sgMsh2	48994304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	56	39	5	0.128205128	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon1:c.C27T:p.S9S	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	CCC	synonymous	NA	NA	NA	NA
M6	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	227	48	8	0.166666667	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.72E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	49001667	12A2p6	cell line	sgMsh2	49001667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	129	69	10	0.144927536	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon6:c.A657G:p.L219L	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	TAA	synonymous	NA	NA	NA	NA
M6	chr16	49018524	12A2p6	cell line	sgMsh2	49018524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	136	66	8	0.121212121	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon21:c.A2703G:p.E901E	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	AAA	synonymous	NA	NA	NA	NA
M6	chr16	50224494	12A2p6	cell line	sgMsh2	50224494	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	157	68	10	0.147058824	exonic	Bbx	nonsynonymous SNV	"Bbx:NM_027444:exon11:c.A1703C:p.E568A,Bbx:NM_001347240:exon12:c.A1703C:p.E568A"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9582242	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	154	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.14E-08	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr16	52189136	12A2p6	cell line	sgMsh2	52189136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	33	27	0	0	exonic	Cblb	frameshift deletion	Cblb:NM_001033238:exon16:c.2420delT:p.F808Sfs*97	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	129	223	34	0.152466368	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr16	57214237	12A2p6	cell line	sgMsh2	57214237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	139	84	21	0.25	exonic	Tbc1d23	synonymous SNV	"Tbc1d23:NM_001358433:exon3:c.T198C:p.S66S,Tbc1d23:NM_026254:exon3:c.T198C:p.S66S"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999845	AAC	synonymous	NA	NA	NA	NA
M6	chr16	57570538	12A2p6	cell line	sgMsh2	57570538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	132	85	17	0.2	exonic	Filip1l	synonymous SNV	"Filip1l:NM_001177871:exon2:c.G774T:p.V258V,Filip1l:NM_001040397:exon5:c.G1488T:p.V496V"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	TGA	synonymous	NA	NA	NA	NA
M6	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	199	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	284	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.9765804	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr16	59098943	12A2p6	cell line	sgMsh2	59098943	T	A	SNV	Mutect2;Vardict	2	0.043	185	0	0	NA	exonic	Olfr192	synonymous SNV	Olfr192:NM_207549:exon1:c.A48T:p.T16T	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.16E-09	CTG	synonymous	NA	NA	NA	NA
M6	chr16	59167394	12A2p6	cell line	sgMsh2	59167394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	152	0	0	NA	exonic	Olfr196	synonymous SNV	Olfr196:NM_146779:exon1:c.T748C:p.L250L	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9982462	AAA	synonymous	NA	NA	NA	NA
M6	chr16	59314714	12A2p6	cell line	sgMsh2	59314714	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	266	0	0	NA	exonic	Olfr204	nonsynonymous SNV	Olfr204:NM_146992:exon1:c.G692T:p.R231M	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.52E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr16	59362061	12A2p6	cell line	sgMsh2	59362061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	649	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.T156C:p.P52P,Olfr209:NM_207551:exon1:c.T156C:p.P52P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	1	GAG	synonymous	NA	NA	NA	NA
M6	chr16	59530197	12A2p6	cell line	sgMsh2	59530197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	63	11	2	0.181818182	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon14:c.C7821T:p.G2607G	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	CGC	synonymous	NA	NA	NA	NA
M6	chr16	63773391	12A2p6	cell line	sgMsh2	63773391	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.303	86	0	0	NA	exonic	Epha3	frameshift insertion	"Epha3:NM_001362452:exon3:c.332dupT:p.L111Ffs*10,Epha3:NM_010140:exon3:c.332dupT:p.L111Ffs*10"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M6	chr16	64786149	12A2p6	cell line	sgMsh2	64786149	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	128	22	5	0.227272727	exonic	Zfp654	frameshift deletion	Zfp654:NM_001347245:exon8:c.1689delA:p.G564Afs*5	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr16	64926197	12A2p6	cell line	sgMsh2	64926197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	178	0	0	NA	exonic	Htr1f	nonsynonymous SNV	Htr1f:NM_008310:exon3:c.C731T:p.S244F	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999873	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr16	66812809	12A2p6	cell line	sgMsh2	66812809	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	88	0	0	NA	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon4:c.G423T:p.L141L,Cadm2:NM_001347247:exon4:c.G423T:p.L141L,Cadm2:NM_178721:exon5:c.G450T:p.L150L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	TCA	synonymous	NA	NA	NA	NA
M6	chr16	66882797	12A2p6	cell line	sgMsh2	66882797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	148	2	0	0	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon2:c.T147C:p.N49N,Cadm2:NM_001347247:exon2:c.T147C:p.N49N,Cadm2:NM_178721:exon3:c.T174C:p.N58N"	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9947591	CAT	synonymous	NA	NA	NA	NA
M6	chr16	69857128	12A2p6	cell line	sgMsh2	69857128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	88	0	0	NA	exonic	Speer2	synonymous SNV	Speer2:NM_173069:exon6:c.T732C:p.H244H	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAT	synonymous	NA	NA	NA	NA
M6	chr16	70483864	12A2p6	cell line	sgMsh2	70483864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	203	14	0	0	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon9:c.A1152C:p.Q384H	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	283	9	0	0	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr16	70492004	12A2p6	cell line	sgMsh2	70492004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	278	8	1	0.125	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.A1406G:p.Y469C	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.59E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	70495379	12A2p6	cell line	sgMsh2	70495379	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	193	12	0	0	exonic	Gbe1	frameshift deletion	Gbe1:NM_028803:exon12:c.1598delA:p.G534Afs*35	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr16	70527167	12A2p6	cell line	sgMsh2	70527167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	119	14	7	0.5	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon13:c.A1669G:p.N557D	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr16	72972373	12A2p6	cell line	sgMsh2	72972373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	120	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon11:c.T1679C:p.F560S	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.579394223	2	0.9991962	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	72979914	12A2p6	cell line	sgMsh2	72979914	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	61	2	0	0	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon15:c.C2273A:p.T758N	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9973297	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	53	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7470246	CTG	synonymous	NA	NA	NA	NA
M6	chr16	75596522	12A2p6	cell line	sgMsh2	75596522	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	83	0	0	NA	exonic	Rbm11	synonymous SNV	Rbm11:NM_198302:exon2:c.A105G:p.P35P	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	2	0.852815	CAC	synonymous	NA	NA	NA	NA
M6	chr16	77114936	12A2p6	cell line	sgMsh2	77114936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	165	86	5	0.058139535	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2852C:p.V951A	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9992945	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	79062263	12A2p6	cell line	sgMsh2	79062263	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	129	0	0	NA	exonic	Tmprss15	nonsynonymous SNV	"Tmprss15:NM_178855:exon8:c.G628T:p.V210F,Tmprss15:NM_008941:exon9:c.G673T:p.V225F"	16qC3.2	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr16	85797849	12A2p6	cell line	sgMsh2	85797849	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	119	47	3	0.063829787	exonic	Adamts1	frameshift deletion	Adamts1:NM_009621:exon7:c.1900delT:p.S634Pfs*10	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr16	85899599	12A2p6	cell line	sgMsh2	85899599	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	68	0	0	NA	exonic	Adamts5	synonymous SNV	Adamts5:NM_011782:exon1:c.G669T:p.S223S	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9983167	CCG	synonymous	NA	NA	NA	NA
M6	chr16	87912833	12A2p6	cell line	sgMsh2	87912833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	70	0	0	NA	exonic	Grik1	nonsynonymous SNV	Grik1:NM_001346964:exon16:c.A2599G:p.T867A	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M6	chr16	88751235	12A2p6	cell line	sgMsh2	88751235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	131	0	0	NA	exonic	Krtap13	nonsynonymous SNV	Krtap13:NM_010671:exon1:c.A364G:p.T122A	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999737	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr16	88884969	12A2p6	cell line	sgMsh2	88884969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	71	0	0	NA	exonic	Krtap19-4	nonsynonymous SNV	Krtap19-4:NM_130873:exon1:c.G98A:p.R33H	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr16	89570793	12A2p6	cell line	sgMsh2	89570793	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	111	0	0	NA	exonic	Krtap11-1	nonsynonymous SNV	Krtap11-1:NM_001113406:exon1:c.C337T:p.P113S	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr16	89833118	12A2p6	cell line	sgMsh2	89833118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	51	12	0	0	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon15:c.T2779C:p.Y927H,Tiam1:NM_009384:exon15:c.T2779C:p.Y927H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	90752060	12A2p6	cell line	sgMsh2	90752060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	30	14	4	0.285714286	exonic	Urb1	synonymous SNV	Urb1:NM_029497:exon39:c.T6759C:p.L2253L	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9796647	CAA	synonymous	NA	NA	NA	NA
M6	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	159	25	6	0.24	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	CGC	synonymous	NA	NA	NA	NA
M6	chr16	91056105	12A2p6	cell line	sgMsh2	91056105	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	117	0	0	NA	exonic	4932438H23Rik	nonsynonymous SNV	"4932438H23Rik:NM_001163695:exon2:c.A88G:p.T30A,4932438H23Rik:NM_028905:exon3:c.A88G:p.T30A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.8753671	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	149	104	2	0.019230769	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	2.51E-09	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M6	chr16	91501628	12A2p6	cell line	sgMsh2	91501628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	103	76	14	0.184210526	exonic	Ifnar1	nonsynonymous SNV	Ifnar1:NM_010508:exon9:c.A1132G:p.M378V	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	91636125	12A2p6	cell line	sgMsh2	91636125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	115	190	28	0.147368421	exonic	Gart	nonsynonymous SNV	"Gart:NM_001357351:exon10:c.T935C:p.V312A,Gart:NM_010256:exon10:c.T935C:p.V312A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.5834732	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr16	94432031	12A2p6	cell line	sgMsh2	94432031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	111	110	15	0.136363636	exonic	Ttc3	nonsynonymous SNV	Ttc3:NM_009441:exon28:c.A2984C:p.D995A	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9997625	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr16	94502227	12A2p6	cell line	sgMsh2	94502227	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	70	92	13	0.141304348	exonic	Vps26c	synonymous SNV	Vps26c:NM_007834:exon6:c.T513C:p.A171A	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	AAG	synonymous	NA	NA	NA	NA
M6	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	161	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999964	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr16	95295629	12A2p6	cell line	sgMsh2	95295629	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	100	0	0	NA	exonic	Kcnj15	nonsynonymous SNV	"Kcnj15:NM_001271695:exon3:c.A28C:p.S10R,Kcnj15:NM_001039056:exon4:c.A28C:p.S10R,Kcnj15:NM_001039057:exon4:c.A109C:p.S37R,Kcnj15:NM_001271691:exon4:c.A28C:p.S10R,Kcnj15:NM_001271692:exon4:c.A109C:p.S37R,Kcnj15:NM_001271693:exon4:c.A28C:p.S10R,Kcnj15:NM_001271694:exon4:c.A109C:p.S37R,Kcnj15:NM_001271687:exon5:c.A109C:p.S37R,Kcnj15:NM_001271689:exon5:c.A28C:p.S10R,Kcnj15:NM_001271690:exon5:c.A109C:p.S37R,Kcnj15:NM_019664:exon5:c.A28C:p.S10R"	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9413643	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Vardict	2	0.033	190	2	0	0	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr17	3453370	12A2p6	cell line	sgMsh2	3453370	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	311	9	2	0.222222222	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon13:c.T2821G:p.F941V,Tiam2:NM_011878:exon13:c.T2821G:p.F941V"	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.18E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr17	3557673	12A2p6	cell line	sgMsh2	3557673	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	58	20	4	0.2	exonic	Tfb1m	frameshift deletion	Tfb1m:NM_146074:exon1:c.41delC:p.P14Rfs*16	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M6	chr17	5291024	12A2p6	cell line	sgMsh2	5291024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	96	59	9	0.152542373	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon8:c.A2446G:p.M816V	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997349	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Strelka2;Vardict	2	0.2319	69	17	0	0	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
M6	chr17	7228018	12A2p6	cell line	sgMsh2	7228018	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	178	37	2	0.054054054	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon2:c.T205C:p.S69P	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	7255928	12A2p6	cell line	sgMsh2	7255928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	129	40	9	0.225	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon8:c.T702C:p.R234R	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	GTG	synonymous	NA	NA	NA	NA
M6	chr17	7271596	12A2p6	cell line	sgMsh2	7271596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	225	28	4	0.142857143	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon11:c.T912C:p.A304A	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M6	chr17	8169062	12A2p6	cell line	sgMsh2	8169062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	110	44	17	0.386363636	exonic	Cep43	synonymous SNV	"Cep43:NM_001197046:exon3:c.T184C:p.L62L,Cep43:NM_201230:exon3:c.T184C:p.L62L"	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998949	CTT	synonymous	A	5	AAAAA	NA
M6	chr17	12210663	12A2p6	cell line	sgMsh2	12210663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	113	113	22	0.194690265	exonic	Agpat4	nonsynonymous SNV	Agpat4:NM_026644:exon5:c.C535T:p.R179W	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	1	0.5775895	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr17	12272077	12A2p6	cell line	sgMsh2	12272077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	161	32	2	0.0625	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon3:c.T466C:p.C156R,Map3k4:NM_011948:exon3:c.T466C:p.C156R"	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9933226	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	12892818	12A2p6	cell line	sgMsh2	12892818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	95	0	0	NA	exonic	Pnldc1	stopgain	Pnldc1:NM_001034866:exon13:c.T1001A:p.L334X	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.579394223	2	0.9946775	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	13225659	12A2p6	cell line	sgMsh2	13225659	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.02	756	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A122C:p.K41T	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.107295226	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	13225746	12A2p6	cell line	sgMsh2	13225746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	1059	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T209C:p.M70T	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.557935178	2	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Vardict	2	0.014	1109	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.075106659	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Vardict	2	0.018	1194	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.096565704	3	1	CCT	synonymous	NA	NA	NA	NA
M6	chr17	14368972	12A2p6	cell line	sgMsh2	14368972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	105	0	0	NA	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon8:c.T702C:p.N234N	17qA2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998537	ATG	synonymous	NA	NA	NA	NA
M6	chr17	15368710	12A2p6	cell line	sgMsh2	15368710	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.201	86	2	0	0	exonic	Dll1	nonsynonymous SNV	"Dll1:NM_007865:exon9:c.T1702C:p.C568R,Dll1:NM_001379042:exon10:c.T1702C:p.C568R"	17qA2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	265	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	17892838	12A2p6	cell line	sgMsh2	17892838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	283	0	0	NA	exonic	Fpr2	nonsynonymous SNV	Fpr2:NM_008039:exon2:c.T95C:p.V32A	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.14E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	18277423	12A2p6	cell line	sgMsh2	18277423	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	134	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon1:c.A86T:p.D29V	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	18304157	12A2p6	cell line	sgMsh2	18304157	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.226	321	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon2:c.T412C:p.Y138H	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.09E-09	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Vardict	2	0.036	158	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.09E-09	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	339	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	19066365	12A2p6	cell line	sgMsh2	19066365	A	G	SNV	Mutect2;Vardict	2	0.038	448	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A1124G:p.Q375R	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	19521428	12A2p6	cell line	sgMsh2	19521428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	280	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon2:c.A401G:p.K134R	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	3.83E-09	AAG	nonsynonymous	GAAA	9	GAAAGAAAG	NA
M6	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	340	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	19589629	12A2p6	cell line	sgMsh2	19589629	G	T	SNV	Mutect2;Vardict	2	0.028	348	0	0	NA	exonic	Vmn2r101	stopgain	Vmn2r101:NM_001104563:exon3:c.G676T:p.G226X	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.016	581	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.085836181	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	19773523	12A2p6	cell line	sgMsh2	19773523	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	155	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon1:c.C161A:p.T54N	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	472	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	GTA	synonymous	NA	NA	NA	NA
M6	chr17	19812337	12A2p6	cell line	sgMsh2	19812337	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	343	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.C2372A:p.T791N	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.02E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr17	19812411	12A2p6	cell line	sgMsh2	19812411	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	238	0	0	NA	exonic	Vmn2r103	frameshift deletion	Vmn2r103:NM_001104565:exon6:c.2446delA:p.S816Afs*1	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAG	frameshift	NA	NA	NA	-1
M6	chr17	19812523	12A2p6	cell line	sgMsh2	19812523	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.198	92	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A2558G:p.Y853C	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	242	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9985506	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	202	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	206	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	20502835	12A2p6	cell line	sgMsh2	20502835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	207	0	0	NA	exonic	Vmn1r225	synonymous SNV	Vmn1r225:NM_134194:exon1:c.A537G:p.T179T	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CAG	synonymous	NA	NA	NA	NA
M6	chr17	20540614	12A2p6	cell line	sgMsh2	20540614	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	252	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.C2480A:p.P827H	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.86E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	20584215	12A2p6	cell line	sgMsh2	20584215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	229	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon2:c.A442G:p.T148A	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	4.15E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	243	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.01E-09	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	21262216	12A2p6	cell line	sgMsh2	21262216	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	247	0	0	NA	exonic	Vmn1r235	nonsynonymous SNV	Vmn1r235:NM_134199:exon2:c.A802T:p.I268L	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.999735	TAT	nonsynonymous	TTATG	14	TTATGTTATGTTAT	NA
M6	chr17	21287172	12A2p6	cell line	sgMsh2	21287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	307	0	0	NA	exonic	Vmn1r236	nonsynonymous SNV	Vmn1r236:NM_134201:exon1:c.A551G:p.Y184C	17qA3.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.23E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	21990896	12A2p6	cell line	sgMsh2	21990896	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	136	27	0	0	exonic	Zfp943	frameshift deletion	Zfp943:NM_001025373:exon3:c.148delT:p.F51Lfs*6	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr17	22548443	12A2p6	cell line	sgMsh2	22548443	T	C	SNV	Mutect2;Vardict	2	0.023	622	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon6:c.A2072G:p.Y691C	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	293	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	23665443	12A2p6	cell line	sgMsh2	23665443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	75	1	1	1	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon3:c.A338G:p.E113G	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24376386	12A2p6	cell line	sgMsh2	24376386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	92	69	8	0.115942029	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon8:c.T896C:p.L299P,Abca3:NM_013855:exon9:c.T896C:p.L299P"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	24421837	12A2p6	cell line	sgMsh2	24421837	A	G	SNV	Mutect2;Vardict	2	0.051	266	46	2	0.043478261	exonic	Rnps1	nonsynonymous SNV	"Rnps1:NM_001080128:exon4:c.A439G:p.R147G,Rnps1:NM_001080127:exon5:c.A508G:p.R170G,Rnps1:NM_001357626:exon6:c.A508G:p.R170G,Rnps1:NM_009070:exon6:c.A508G:p.R170G"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24442481	12A2p6	cell line	sgMsh2	24442481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	149	1	0	0	exonic	Dnase1l2	nonsynonymous SNV	Dnase1l2:NM_025718:exon3:c.T157C:p.Y53H	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9997764	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24444906	12A2p6	cell line	sgMsh2	24444906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	41	24	6	0.25	exonic	E4f1	synonymous SNV	"E4f1:NM_001301784:exon11:c.A1659G:p.R553R,E4f1:NM_001355708:exon11:c.A1179G:p.R393R,E4f1:NM_007893:exon11:c.A1656G:p.R552R"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.009936071	CTC	synonymous	NA	NA	NA	NA
M6	chr17	24496437	12A2p6	cell line	sgMsh2	24496437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	64	0	0	NA	exonic	Caskin1	synonymous SNV	"Caskin1:NM_001360469:exon4:c.T256C:p.L86L,Caskin1:NM_027937:exon4:c.T256C:p.L86L"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	GTT	synonymous	NA	NA	NA	NA
M6	chr17	24587208	12A2p6	cell line	sgMsh2	24587208	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	157	14	3	0.214285714	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon31:c.A10056T:p.T3352T	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7526584	CAG	synonymous	CCCACA	12	CCCACACCCACA	NA
M6	chr17	24613241	12A2p6	cell line	sgMsh2	24613241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	63	46	10	0.217391304	exonic	Tsc2	nonsynonymous SNV	"Tsc2:NM_001039363:exon20:c.T2170C:p.F724L,Tsc2:NM_001286713:exon20:c.T2170C:p.F724L,Tsc2:NM_001286714:exon20:c.T2170C:p.F724L,Tsc2:NM_001286716:exon20:c.T2170C:p.F724L,Tsc2:NM_001286718:exon20:c.T2170C:p.F724L,Tsc2:NM_001286720:exon20:c.T2170C:p.F724L,Tsc2:NM_011647:exon20:c.T2170C:p.F724L"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9709912	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24702369	12A2p6	cell line	sgMsh2	24702369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	97	68	8	0.117647059	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon15:c.A1447G:p.N483D	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997518	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24705424	12A2p6	cell line	sgMsh2	24705424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	196	43	9	0.209302326	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon6:c.A437G:p.H146R	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24852744	12A2p6	cell line	sgMsh2	24852744	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	137	34	0	0	exonic	Hagh	frameshift deletion	Hagh:NM_024284:exon2:c.90delG:p.G31Dfs*12	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M6	chr17	24880730	12A2p6	cell line	sgMsh2	24880730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	108	0	0	NA	exonic	Igfals	nonsynonymous SNV	"Igfals:NM_001364895:exon2:c.T794G:p.M265R,Igfals:NM_001364896:exon2:c.T899G:p.M300R,Igfals:NM_008340:exon2:c.T794G:p.M265R"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	24891473	12A2p6	cell line	sgMsh2	24891473	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	65	59	11	0.186440678	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon7:c.T1273A:p.Y425N,Spsb3:NM_001163751:exon7:c.T928A:p.Y310N,Spsb3:NM_001374602:exon7:c.T835A:p.Y279N,Spsb3:NM_027141:exon7:c.T940A:p.Y314N"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	110	57	0	0	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999688	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	25092449	12A2p6	cell line	sgMsh2	25092449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	88	49	11	0.224489796	exonic	Ift140	nonsynonymous SNV	Ift140:NM_134126:exon26:c.A3617G:p.Y1206C	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9948481	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	25113114	12A2p6	cell line	sgMsh2	25113114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	85	9	2	0.222222222	exonic	Telo2	nonsynonymous SNV	"Telo2:NM_001163661:exon3:c.T479A:p.V160D,Telo2:NM_027880:exon3:c.T479A:p.V160D"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.7566596	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	25171566	12A2p6	cell line	sgMsh2	25171566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	90	0	0	NA	exonic	Ccdc154	nonsynonymous SNV	Ccdc154:NM_001079929:exon16:c.G1763A:p.G588D	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	25299878	12A2p6	cell line	sgMsh2	25299878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	156	0	0	NA	exonic	Prss34	nonsynonymous SNV	Prss34:NM_178372:exon5:c.A833G:p.K278R	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	25373836	12A2p6	cell line	sgMsh2	25373836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	74	0	0	NA	exonic	Tpsg1	nonsynonymous SNV	"Tpsg1:NM_001357726:exon3:c.T290C:p.M97T,Tpsg1:NM_012034:exon4:c.T599C:p.M200T"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	25393902	12A2p6	cell line	sgMsh2	25393902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	108	10	1	0.1	exonic	Cacna1h	nonsynonymous SNV	"Cacna1h:NM_001163691:exon7:c.A946G:p.T316A,Cacna1h:NM_021415:exon7:c.A946G:p.T316A"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.597729	GTG	nonsynonymous	TGCAC	10	TGCACTGCAC	NA
M6	chr17	25777348	12A2p6	cell line	sgMsh2	25777348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	40	53	8	0.150943396	exonic	Ciao3	synonymous SNV	Ciao3:NM_026238:exon4:c.G330A:p.R110R	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9893925	GGC	synonymous	NA	NA	NA	NA
M6	chr17	25831566	12A2p6	cell line	sgMsh2	25831566	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	153	510	100	0.196078431	exonic	Stub1	nonsynonymous SNV	Stub1:NM_019719:exon4:c.A593T:p.Q198L	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999939	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	25947877	12A2p6	cell line	sgMsh2	25947877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	70	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.C685T:p.P229S	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.557935178	2	0.9753591	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	25960509	12A2p6	cell line	sgMsh2	25960509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	69	6	0	0	exonic	Capn15	synonymous SNV	"Capn15:NM_015830:exon8:c.G2592A:p.R864R,Capn15:NM_001347334:exon10:c.G2790A:p.R930R"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9984242	CCC	synonymous	NA	NA	NA	NA
M6	chr17	26067991	12A2p6	cell line	sgMsh2	26067991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	72	23	3	0.130434783	exonic	Rab11fip3	nonsynonymous SNV	"Rab11fip3:NM_001162868:exon1:c.T1187A:p.V396E,Rab11fip3:NM_001162869:exon1:c.T1187A:p.V396E"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987071	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	26184221	12A2p6	cell line	sgMsh2	26184221	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	140	98	24	0.244897959	exonic	Axin1	nonsynonymous SNV	"Axin1:NM_001159598:exon5:c.A1176T:p.K392N,Axin1:NM_009733:exon5:c.A1176T:p.K392N"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	53	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.547205655	2	0.9105727	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	27886552	12A2p6	cell line	sgMsh2	27886552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	89	19	3	0.157894737	exonic	Uhrf1bp1	nonsynonymous SNV	Uhrf1bp1:NM_001080769:exon14:c.T2051A:p.L684H	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	142	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999997	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	70	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.52574661	2	0.9721006	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	88	63	4	0.063492063	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9982925	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	152	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	8.82E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	163	68	1	0.014705882	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.41E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr17	30530221	12A2p6	cell line	sgMsh2	30530221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	211	47	6	0.127659574	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon2:c.T118C:p.F40L,Btbd9:NM_172618:exon2:c.T118C:p.F40L"	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	0.9999623	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	30992080	12A2p6	cell line	sgMsh2	30992080	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	85	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon14:c.T2576C:p.V859A	17qA3.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9800199	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	31678065	12A2p6	cell line	sgMsh2	31678065	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	171	0	0	NA	exonic	Cryaa	nonsynonymous SNV	"Cryaa:NM_001278569:exon1:c.T65G:p.L22R,Cryaa:NM_001278570:exon1:c.T65G:p.L22R,Cryaa:NM_013501:exon1:c.T65G:p.L22R"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	9.25E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	32141444	12A2p6	cell line	sgMsh2	32141444	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	33	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.G4512A:p.E1504E	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9832599	CCT	synonymous	NA	NA	NA	NA
M6	chr17	32144796	12A2p6	cell line	sgMsh2	32144796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	113	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon21:c.T3369C:p.N1123N	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	TAT	synonymous	NA	NA	NA	NA
M6	chr17	32158267	12A2p6	cell line	sgMsh2	32158267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	174	3	0	0	exonic	Notch3	frameshift deletion	Notch3:NM_008716:exon5:c.749delG:p.G250Efs*3	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6	chr17	32392616	12A2p6	cell line	sgMsh2	32392616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	67	0	0	NA	exonic	Rasal3	stopgain	"Rasal3:NM_178785:exon14:c.C2530T:p.Q844X,Rasal3:NM_001374604:exon15:c.C2464T:p.Q822X,Rasal3:NM_001347343:exon16:c.C2536T:p.Q846X"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9530012	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr17	33432978	12A2p6	cell line	sgMsh2	33432978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	45	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A11T:p.N4I	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	33434038	12A2p6	cell line	sgMsh2	33434038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	90	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.A1071G:p.L357L	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9395608	TAC	synonymous	NA	NA	NA	NA
M6	chr17	33538663	12A2p6	cell line	sgMsh2	33538663	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	229	11	2	0.181818182	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon9:c.A233C:p.E78A,Adamts10:NM_001329143:exon10:c.A233C:p.E78A,Adamts10:NM_001329151:exon10:c.A13C:p.S5R,Adamts10:NM_001329152:exon10:c.A13C:p.S5R,Adamts10:NM_001329153:exon10:c.A13C:p.S5R,Adamts10:NM_001329154:exon10:c.A13C:p.S5R,Adamts10:NM_001329202:exon11:c.A13C:p.S5R,Adamts10:NM_001329203:exon11:c.A326C:p.E109A,Adamts10:NM_172619:exon11:c.A1430C:p.E477A"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999898	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	33642056	12A2p6	cell line	sgMsh2	33642056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	257	0	0	NA	exonic	Pram1	nonsynonymous SNV	Pram1:NM_001002842:exon3:c.A1523G:p.Q508R	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	7.37E-09	CAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M6	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	51	76	3	0.039473684	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.590123746	2	0.8472635	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	34059163	12A2p6	cell line	sgMsh2	34059163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	104	0	0	NA	exonic	Col11a2	synonymous SNV	"Col11a2:NM_009926:exon41:c.T2991C:p.D997D,Col11a2:NM_001317722:exon42:c.T3186C:p.D1062D"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998437	ATG	synonymous	NA	NA	NA	NA
M6	chr17	34114108	12A2p6	cell line	sgMsh2	34114108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	132	230	53	0.230434783	exonic	Brd2	nonsynonymous SNV	"Brd2:NM_001204973:exon9:c.A1396G:p.T466A,Brd2:NM_010238:exon9:c.A1396G:p.T466A"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	34419577	12A2p6	cell line	sgMsh2	34419577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	194	0	0	NA	exonic	BC051142	synonymous SNV	"BC051142:NM_001001177:exon5:c.A126G:p.S42S,BC051142:NM_001163855:exon5:c.A126G:p.S42S"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9764994	CAG	synonymous	NA	NA	NA	NA
M6	chr17	34685052	12A2p6	cell line	sgMsh2	34685052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	119	4	3	0.75	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon7:c.T3166C:p.Y1056H	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9991707	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	57	1	0	0	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	200	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr17	34740606	12A2p6	cell line	sgMsh2	34740606	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	60	0	0	NA	exonic	C4b	nonsynonymous SNV	C4b:NM_009780:exon10:c.T1078G:p.F360V	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9902774	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.09	80	97	2	0.020618557	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.482828519	2	0.9215317	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	35149532	12A2p6	cell line	sgMsh2	35149532	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	159	300	8	0.026666667	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon30:c.A6311G:p.Q2104R,Prrc2a:NM_020027:exon30:c.A6314G:p.Q2105R"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	35158000	12A2p6	cell line	sgMsh2	35158000	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	68	175	31	0.177142857	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon14:c.C2133T:p.P711P,Prrc2a:NM_020027:exon14:c.C2133T:p.P711P"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9983167	GGG	synonymous	GGCC	8	GGCCGGCC	NA
M6	chr17	35159890	12A2p6	cell line	sgMsh2	35159890	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	59	306	72	0.235294118	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon11:c.G1174A:p.E392K,Prrc2a:NM_020027:exon11:c.G1174A:p.E392K"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr17	35171181	12A2p6	cell line	sgMsh2	35171181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	123	0	0	NA	exonic	Aif1	synonymous SNV	"Aif1:NM_001361502:exon7:c.T369C:p.Y123Y,Aif1:NM_001361501:exon8:c.T372C:p.Y124Y,Aif1:NM_019467:exon8:c.T372C:p.Y124Y"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.998684	CAT	synonymous	NA	NA	NA	NA
M6	chr17	35235699	12A2p6	cell line	sgMsh2	35235699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	129	12	1	0.083333333	exonic	Nfkbil1	nonsynonymous SNV	Nfkbil1:NM_010909:exon1:c.A8G:p.N3S	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Vardict	2	0.046	144	233	3	0.012875536	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999999	CGC	synonymous	NA	NA	NA	NA
M6	chr17	35265861	12A2p6	cell line	sgMsh2	35265861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	468	165	34	0.206060606	exonic	H2-D1;H2-L	nonsynonymous SNV	"H2-D1:NM_010380:exon4:c.T697A:p.Y233N,H2-L:NM_001267808:exon8:c.T673A:p.Y225N"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	35344959	12A2p6	cell line	sgMsh2	35344959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	476	0	0	NA	exonic	H2-Q2	nonsynonymous SNV	"H2-Q2:NM_001368740:exon4:c.T815G:p.F272C,H2-Q2:NM_010392:exon4:c.T815G:p.F272C"	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	35567593	12A2p6	cell line	sgMsh2	35567593	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	63	0	0	NA	exonic	2300002M23Rik	nonsynonymous SNV	2300002M23Rik:NM_175148:exon1:c.T40G:p.L14V	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	35636896	12A2p6	cell line	sgMsh2	35636896	G	T	SNV	Mutect2;Vardict	2	0.052	83	52	0	0	exonic	Mucl3	synonymous SNV	Mucl3:NM_001033366:exon3:c.C1440A:p.S480S	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.999665	AGG	synonymous	NA	NA	NA	NA
M6	chr17	35658255	12A2p6	cell line	sgMsh2	35658255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	42	84	14	0.166666667	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon25:c.A2553G:p.L851L	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9906932	GTA	synonymous	NA	NA	NA	NA
M6	chr17	35848547	12A2p6	cell line	sgMsh2	35848547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	115	41	5	0.12195122	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon5:c.A1818G:p.I606M	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999244	TAC	nonsynonymous	ATAC	9	ATACATACA	NA
M6	chr17	35850517	12A2p6	cell line	sgMsh2	35850517	T	C	SNV	Mutect2;Vardict	2	0.038	116	75	1	0.013333333	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon8:c.T2321C:p.I774T	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	172	85	3	0.035294118	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999999	CAG	synonymous	NA	NA	NA	NA
M6	chr17	36671197	12A2p6	cell line	sgMsh2	36671197	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	211	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon3:c.G511A:p.E171K	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr17	36870135	12A2p6	cell line	sgMsh2	36870135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	60	0	0	NA	exonic	Trim10	nonsynonymous SNV	Trim10:NM_011280:exon1:c.A257G:p.Q86R	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	36909282	12A2p6	cell line	sgMsh2	36909282	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	141	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1089T:p.K363N	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999864	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	36947603	12A2p6	cell line	sgMsh2	36947603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	69	10	3	0.3	exonic	Rnf39	synonymous SNV	Rnf39:NM_001099632:exon4:c.T1026C:p.R342R	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	GTA	synonymous	NA	NA	NA	NA
M6	chr17	37195390	12A2p6	cell line	sgMsh2	37195390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	144	0	0	NA	exonic	Ubd	nonsynonymous SNV	Ubd:NM_023137:exon2:c.C166T:p.P56S	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9210733	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr17	37609922	12A2p6	cell line	sgMsh2	37609922	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	327	0	0	NA	exonic	Olfr115	synonymous SNV	Olfr115:NM_001011753:exon1:c.C834T:p.Y278Y	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.06E-09	TGT	synonymous	NA	NA	NA	NA
M6	chr17	37672151	12A2p6	cell line	sgMsh2	37672151	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	589	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.G127A:p.V43I	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Vardict	2	0.041	437	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Vardict	2	0.045	476	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M6	chr17	37752250	12A2p6	cell line	sgMsh2	37752250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	622	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.T395C:p.I132T	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr17	37952180	12A2p6	cell line	sgMsh2	37952180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	437	0	0	NA	exonic	Olfr761	synonymous SNV	Olfr761:NM_001011829:exon1:c.A843G:p.L281L	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	1.16E-09	GTA	synonymous	G	5	GGGGG	NA
M6	chr17	38275376	12A2p6	cell line	sgMsh2	38275376	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	225	0	0	NA	exonic	Olfr138	nonsynonymous SNV	Olfr138:NM_130868:exon1:c.G604T:p.V202L	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999387	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr17	38304580	12A2p6	cell line	sgMsh2	38304580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	105	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A880G:p.R294G	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Vardict	2	0.035	156	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.07E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	426	1	0	0	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	61	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr17	42666616	12A2p6	cell line	sgMsh2	42666616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	136	2	0	0	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289500:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289501:exon6:c.T1835C:p.V612A,Adgrf4:NM_030067:exon6:c.T1835C:p.V612A"	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999811	AAC	nonsynonymous	T	5	TTTTT	NA
M6	chr17	42666943	12A2p6	cell line	sgMsh2	42666943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	185	1	0	0	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289500:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289501:exon6:c.T1508C:p.I503T,Adgrf4:NM_030067:exon6:c.T1508C:p.I503T"	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999977	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	269	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M6	chr17	42876315	12A2p6	cell line	sgMsh2	42876315	A	G	SNV	Mutect2;Vardict	2	0.375	6	230	50	0.217391304	exonic	Cd2ap	nonsynonymous SNV	Cd2ap:NM_009847:exon1:c.T2C:p.M1T	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.09012321	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr17	43450308	12A2p6	cell line	sgMsh2	43450308	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	194	29	0	0	exonic	Adgrf5	nonsynonymous SNV	"Adgrf5:NM_001081178:exon17:c.G2893T:p.G965W,Adgrf5:NM_001357332:exon17:c.G2947T:p.G983W"	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999965	AGG	nonsynonymous	G	5	GGGGG	NA
M6	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	95	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9353692	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	43602838	12A2p6	cell line	sgMsh2	43602838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	148	20	0	0	exonic	Pla2g7	nonsynonymous SNV	Pla2g7:NM_013737:exon8:c.G671A:p.R224K	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr17	44270494	12A2p6	cell line	sgMsh2	44270494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	39	19	3	0.157894737	exonic	Clic5	nonsynonymous SNV	Clic5:NM_172621:exon5:c.T410C:p.L137P	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9823528	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	45633384	12A2p6	cell line	sgMsh2	45633384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	132	0	0	NA	exonic	Capn11	synonymous SNV	Capn11:NM_001013767:exon14:c.T1593C:p.F531F	17qB3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999754	CAA	synonymous	NA	NA	NA	NA
M6	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	105	22	0	0	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999832	AGG	synonymous	NA	NA	NA	NA
M6	chr17	46241817	12A2p6	cell line	sgMsh2	46241817	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	61	66	6	0.090909091	exonic	Xpo5	nonsynonymous SNV	Xpo5:NM_028198:exon31:c.A3404C:p.N1135T	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.8943082	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	88	1	0	0	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9958643	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	46306692	12A2p6	cell line	sgMsh2	46306692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	36	4	0	0	exonic	Abcc10	stopgain	"Abcc10:NM_145140:exon14:c.T3293A:p.L1098X,Abcc10:NM_001347396:exon15:c.T3416A:p.L1139X,Abcc10:NM_170680:exon15:c.T3416A:p.L1139X"	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9862283	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	46310187	12A2p6	cell line	sgMsh2	46310187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	81	5	0	0	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon12:c.A2773G:p.T925A,Abcc10:NM_001347396:exon13:c.A2896G:p.T966A,Abcc10:NM_170680:exon13:c.A2896G:p.T966A"	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	46541735	12A2p6	cell line	sgMsh2	46541735	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	49	3	0	0	exonic	Cul9	nonsynonymous SNV	Cul9:NM_001081335:exon3:c.A700G:p.T234A	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	46676762	12A2p6	cell line	sgMsh2	46676762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	145	183	39	0.213114754	exonic	Klhdc3	synonymous SNV	"Klhdc3:NM_001163729:exon8:c.G864A:p.P288P,Klhdc3:NM_027910:exon9:c.G864A:p.P288P"	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	ACG	synonymous	NA	NA	NA	NA
M6	chr17	49070985	12A2p6	cell line	sgMsh2	49070985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	96	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon2:c.G1093A:p.A365T	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9997158	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	52803436	12A2p6	cell line	sgMsh2	52803436	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	123	0	0	NA	exonic	Kcnh8	nonsynonymous SNV	Kcnh8:NM_001031811:exon5:c.A674T:p.D225V	17qC	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999481	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	55814243	12A2p6	cell line	sgMsh2	55814243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	161	0	0	NA	exonic	Adgre4	synonymous SNV	Adgre4:NM_139138:exon12:c.C1308T:p.L436L	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9989912	TCA	synonymous	NA	NA	NA	NA
M6	chr17	56064084	12A2p6	cell line	sgMsh2	56064084	C	A	SNV	Mutect2;Strelka2;MuSe	3	0.184	106	35	7	0.2	exonic	Chaf1a	synonymous SNV	Chaf1a:NM_013733:exon12:c.C1968A:p.R656R	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9997833	GCT	synonymous	NA	NA	NA	NA
M6	chr17	56064087	12A2p6	cell line	sgMsh2	56064087	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.182	108	33	7	0.212121212	exonic	Chaf1a	synonymous SNV	Chaf1a:NM_013733:exon12:c.T1971C:p.F657F	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9997173	TTC	synonymous	NA	NA	NA	NA
M6	chr17	56082293	12A2p6	cell line	sgMsh2	56082293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	81	86	3	0.034883721	exonic	Hdgfl2	stopgain	"Hdgfl2:NM_001304784:exon3:c.A166T:p.K56X,Hdgfl2:NM_001304785:exon3:c.A166T:p.K56X,Hdgfl2:NM_001331053:exon3:c.A166T:p.K56X,Hdgfl2:NM_008233:exon3:c.A166T:p.K56X"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr17	56104565	12A2p6	cell line	sgMsh2	56104565	C	T	SNV	Mutect2;MuSe;Vardict	3	0.048	385	3	0	0	exonic	Plin4	nonsynonymous SNV	"Plin4:NM_001372234:exon5:c.G3059A:p.G1020D,Plin4:NM_020568:exon6:c.G2465A:p.G822D"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr17	56353539	12A2p6	cell line	sgMsh2	56353539	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	257	39	0	0	exonic	Kdm4b	nonsynonymous SNV	"Kdm4b:NM_001357909:exon4:c.G332A:p.R111H,Kdm4b:NM_172132:exon4:c.G332A:p.R111H"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	103	49	3	0.06122449	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9998847	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	160	1	1	1	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr17	56705553	12A2p6	cell line	sgMsh2	56705553	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	77	136	5	0.036764706	exonic	Ranbp3	synonymous SNV	"Ranbp3:NM_001252467:exon6:c.T412C:p.L138L,Ranbp3:NM_027933:exon8:c.T571C:p.L191L,Ranbp3:NM_001252466:exon9:c.T772C:p.L258L"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9973248	CTT	synonymous	NA	NA	NA	NA
M6	chr17	56853862	12A2p6	cell line	sgMsh2	56853862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	118	0	0	NA	exonic	Acsbg2	nonsynonymous SNV	Acsbg2:NM_001039114:exon8:c.T781G:p.S261A	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	57023515	12A2p6	cell line	sgMsh2	57023515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	98	206	28	0.13592233	exonic	Khsrp	synonymous SNV	Khsrp:NM_010613:exon15:c.T1680G:p.P560P	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	GAG	synonymous	NA	NA	NA	NA
M6	chr17	57047201	12A2p6	cell line	sgMsh2	57047201	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	73	74	12	0.162162162	exonic	Slc25a23	synonymous SNV	"Slc25a23:NM_001379069:exon8:c.C1051A:p.R351R,Slc25a23:NM_001379067:exon9:c.C1243A:p.R415R,Slc25a23:NM_001379068:exon9:c.C1243A:p.R415R,Slc25a23:NM_025877:exon9:c.C1204A:p.R402R,Slc25a23:NM_001379070:exon10:c.C835A:p.R279R"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	CGG	synonymous	NA	NA	NA	NA
M6	chr17	57062728	12A2p6	cell line	sgMsh2	57062728	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	51	96	29	0.302083333	exonic	Crb3	nonsynonymous SNV	"Crb3:NM_001347408:exon2:c.T35C:p.F12S,Crb3:NM_001359813:exon2:c.T35C:p.F12S,Crb3:NM_001359814:exon2:c.T35C:p.F12S,Crb3:NM_177638:exon2:c.T35C:p.F12S"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	1	0.6309058	TTT	nonsynonymous	GTTTG	10	GTTTGGTTTG	NA
M6	chr17	57107100	12A2p6	cell line	sgMsh2	57107100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	103	49	13	0.265306122	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.T526A:p.Y176N	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	133	53	2	0.037735849	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.997854	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	57509535	12A2p6	cell line	sgMsh2	57509535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	186	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon6:c.G1801T:p.A601S,Vmn2r120:NM_001104591:exon7:c.G1819T:p.A607S"	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9995406	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	257	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	58410314	12A2p6	cell line	sgMsh2	58410314	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	137	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon24:c.G3890A:p.R1297K	17qD	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	64834280	12A2p6	cell line	sgMsh2	64834280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	139	0	0	NA	exonic	4930583I09Rik	synonymous SNV	4930583I09Rik:NM_030031:exon3:c.C246T:p.S82S	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.8255208	GGC	synonymous	GGCT	8	GGCTGGCT	NA
M6	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	128	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999995	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	66148789	12A2p6	cell line	sgMsh2	66148789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	139	12	1	0.083333333	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon21:c.T2104C:p.S702P,Ddx11:NM_001348292:exon21:c.T2182C:p.S728P"	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999845	GTC	nonsynonymous	TGTC	8	TGTCTGTC	NA
M6	chr17	67738873	12A2p6	cell line	sgMsh2	67738873	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	158	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.C772G:p.P258A	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9989603	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr17	67748052	12A2p6	cell line	sgMsh2	67748052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	28	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon11:c.T1452C:p.V484V	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9768578	TTG	synonymous	NA	NA	NA	NA
M6	chr17	67785064	12A2p6	cell line	sgMsh2	67785064	T	C	SNV	Mutect2;Vardict	2	0.031	183	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon35:c.T4931C:p.L1644S	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	67817637	12A2p6	cell line	sgMsh2	67817637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	218	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon60:c.T8691C:p.A2897A	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.999999	CTC	synonymous	NA	NA	NA	NA
M6	chr17	67881452	12A2p6	cell line	sgMsh2	67881452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	209	0	0	NA	exonic	Arhgap28	nonsynonymous SNV	"Arhgap28:NM_001347410:exon5:c.T572C:p.L191P,Arhgap28:NM_172964:exon5:c.T722C:p.L241P"	17qE1.1	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9985082	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr17	68461485	12A2p6	cell line	sgMsh2	68461485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	217	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.T587C:p.M196T	17qE1.2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr17	69388297	12A2p6	cell line	sgMsh2	69388297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	177	35	4	0.114285714	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.A989G:p.Y330C,Zbtb14:NM_001356283:exon3:c.A989G:p.Y330C,Zbtb14:NM_009547:exon3:c.A989G:p.Y330C"	17qE1.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	71751515	12A2p6	cell line	sgMsh2	71751515	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	60	0	0	NA	exonic	Pcare	nonsynonymous SNV	Pcare:NM_146082:exon1:c.G1166T:p.G389V	17qE1.3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9954166	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr17	73934860	12A2p6	cell line	sgMsh2	73934860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	75	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon6:c.A443G:p.N148S	17qE2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9903407	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	74447996	12A2p6	cell line	sgMsh2	74447996	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	88	28	8	0.285714286	exonic	Nlrc4	frameshift deletion	Nlrc4:NM_001033367:exon3:c.224delA:p.N75Tfs*9	17qE2	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	123	83	9	0.108433735	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999957	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	78855344	12A2p6	cell line	sgMsh2	78855344	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	174	72	4	0.055555556	exonic	Eif2ak2	nonsynonymous SNV	Eif2ak2:NM_011163:exon15:c.A1424G:p.E475G	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9999933	TTC	nonsynonymous	ACTT	8	ACTTACTT	NA
M6	chr17	78934740	12A2p6	cell line	sgMsh2	78934740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	197	31	0.157360406	exonic	Cebpz	nonsynonymous SNV	Cebpz:NM_001024806:exon2:c.C1484T:p.P495L	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	147	89	7	0.078651685	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr17	80238795	12A2p6	cell line	sgMsh2	80238795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	43	33	13	0.393939394	exonic	Dhx57	nonsynonymous SNV	"Dhx57:NM_198942:exon23:c.A4000G:p.T1334A,Dhx57:NM_001163759:exon24:c.A4159G:p.T1387A"	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.991283	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr17	80615070	12A2p6	cell line	sgMsh2	80615070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	138	94	9	0.095744681	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon20:c.T1421A:p.V474D,Map4k3:NM_001360278:exon20:c.T1391A:p.V464D"	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9998285	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr17	81648313	12A2p6	cell line	sgMsh2	81648313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	174	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon2:c.A1295T:p.D432V,Slc8a1:NM_001286684:exon2:c.A1295T:p.D432V,Slc8a1:NM_011406:exon2:c.A1295T:p.D432V"	17qE3	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	GTC	nonsynonymous	C	5	CCCCC	NA
M6	chr17	83221013	12A2p6	cell line	sgMsh2	83221013	G	A	SNV	Mutect2;Vardict	2	0.1	42	2	0	0	exonic	Pkdcc	synonymous SNV	Pkdcc:NM_134117:exon3:c.G810A:p.P270P	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.8025071	CGC	synonymous	NA	NA	NA	NA
M6	chr17	83221077	12A2p6	cell line	sgMsh2	83221077	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	54	4	1	0.25	exonic	Pkdcc	frameshift deletion	Pkdcc:NM_134117:exon3:c.874delA:p.V293fs*0	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr17	84575027	12A2p6	cell line	sgMsh2	84575027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	91	12	2	0.166666667	exonic	Plekhh2	nonsynonymous SNV	"Plekhh2:NM_001357987:exon11:c.T1151C:p.L384P,Plekhh2:NM_001357986:exon12:c.T2060C:p.L687P,Plekhh2:NM_177606:exon12:c.T2060C:p.L687P"	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr17	84751229	12A2p6	cell line	sgMsh2	84751229	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	170	74	3	0.040540541	exonic	Lrpprc	synonymous SNV	Lrpprc:NM_028233:exon21:c.A2202G:p.Q734Q	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999518	CTT	synonymous	NA	NA	NA	NA
M6	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	60	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.5659157	CTC	synonymous	NA	NA	NA	NA
M6	chr17	85028758	12A2p6	cell line	sgMsh2	85028758	C	A	SNV	Mutect2;Vardict	2	0.051	95	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.C327A:p.I109I	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999153	TCT	synonymous	NA	NA	NA	NA
M6	chr17	86168897	12A2p6	cell line	sgMsh2	86168897	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	57	13	2	0.153846154	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon1:c.T305A:p.F102Y	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9965248	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr17	87135223	12A2p6	cell line	sgMsh2	87135223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	85	101	24	0.237623762	exonic	Socs5	synonymous SNV	Socs5:NM_019654:exon3:c.A1590C:p.R530R	17qE4	chr17-3079405-87650787	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9950409	GAG	synonymous	NA	NA	NA	NA
M6	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.244	177	139	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	23.31008077	21.31008077	2	0.93	4.989228032	RARE KARYOTYPE	6	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M6	chr17	87678297	12A2p6	cell line	sgMsh2	87678297	G	A	SNV	Mutect2;MuSe;Vardict	3	0.035	1069	259	9	0.034749035	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon2:c.G301A:p.E101K	17qE4	chr17-87672302-87723786	23.31008077	21.31008077	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	TGA	nonsynonymous	NA	NA	NA	NA
M6	chr17	87797118	12A2p6	cell line	sgMsh2	87797118	G	A	SNV	Mutect2;MuSe;Vardict	3	0.311	12	0	0	NA	exonic	Kcnk12	nonsynonymous SNV	Kcnk12:NM_199251:exon1:c.C337T:p.R113C	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9346481	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr17	87988322	12A2p6	cell line	sgMsh2	87988322	T	-	Deletion	Mutect2;Vardict	2	0.06	174	115	1	0.008695652	exonic	Msh6	frameshift deletion	Msh6:NM_010830:exon5:c.3300delT:p.F1102Lfs*10	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr17	88635346	12A2p6	cell line	sgMsh2	88635346	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	52	55	2	0.036363636	exonic	Ston1	frameshift deletion	Ston1:NM_029858:exon2:c.179delC:p.L62Cfs*154	17qE4	chr17-87745782-94740433	5	4	1	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ACC	frameshift	CAG	8	CAGCAGCA	-1
M6	chr18	4343023	12A2p6	cell line	sgMsh2	4343023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	83	0	0	NA	exonic	Map3k8	nonsynonymous SNV	Map3k8:NM_007746:exon3:c.T503C:p.L168P	18qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	5214851	12A2p6	cell line	sgMsh2	5214851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	111	3	1	0.333333333	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon4:c.A106G:p.T36A,Zfp438:NM_178722:exon4:c.A106G:p.T36A"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	202	119	2	0.016806723	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	1.98E-08	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M6	chr18	6220979	12A2p6	cell line	sgMsh2	6220979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	111	334	82	0.245508982	exonic	Kif5b	synonymous SNV	Kif5b:NM_008448:exon12:c.T1128C:p.I376I	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	CAA	synonymous	NA	NA	NA	NA
M6	chr18	7288548	12A2p6	cell line	sgMsh2	7288548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	80	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon4:c.A318G:p.Q106Q	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GTT	synonymous	NA	NA	NA	NA
M6	chr18	7355046	12A2p6	cell line	sgMsh2	7355046	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	231	20	1	0.05	exonic	Mpp7	frameshift deletion	"Mpp7:NM_001081287:exon15:c.1379delA:p.K460Rfs*11,Mpp7:NM_001360860:exon16:c.1379delA:p.K460Rfs*11"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr18	7379989	12A2p6	cell line	sgMsh2	7379989	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	62	13	1	0.076923077	exonic	Mpp7	nonsynonymous SNV	"Mpp7:NM_001081287:exon13:c.C1204T:p.H402Y,Mpp7:NM_001161620:exon13:c.C1204T:p.R402C,Mpp7:NM_001360860:exon14:c.C1204T:p.H402Y"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr18	7403267	12A2p6	cell line	sgMsh2	7403267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	79	27	0	0	exonic	Mpp7	nonsynonymous SNV	"Mpp7:NM_001081287:exon12:c.A1042G:p.T348A,Mpp7:NM_001161620:exon12:c.A1042G:p.T348A,Mpp7:NM_001360860:exon13:c.A1042G:p.T348A"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	12188311	12A2p6	cell line	sgMsh2	12188311	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	100	77	2	0.025974026	exonic	Rmc1	nonsynonymous SNV	Rmc1:NM_029623:exon15:c.C1399T:p.P467S	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.991773	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	142	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999873	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	159	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.509652326	2	0.9997475	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	20340039	12A2p6	cell line	sgMsh2	20340039	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	98	0	0	NA	exonic	Dsg1a	nonsynonymous SNV	Dsg1a:NM_010079:exon15:c.A2168G:p.Y723C	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	20340838	12A2p6	cell line	sgMsh2	20340838	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.262	360	0	0	NA	exonic	Dsg1a	frameshift insertion	Dsg1a:NM_010079:exon15:c.2968dupG:p.V992Gfs*10	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAG	frameshift	G	5	GGGGG	1
M6	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	166	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999974	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr18	20533423	12A2p6	cell line	sgMsh2	20533423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	115	0	0	NA	exonic	Dsg3	nonsynonymous SNV	Dsg3:NM_030596:exon12:c.A1688G:p.Y563C	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	20720135	12A2p6	cell line	sgMsh2	20720135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	115	234	57	0.243589744	exonic	B4galt6	synonymous SNV	B4galt6:NM_019737:exon3:c.T240C:p.P80P	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	CAG	synonymous	NA	NA	NA	NA
M6	chr18	21147800	12A2p6	cell line	sgMsh2	21147800	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	126	32	0	0	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.C1498A:p.L500M	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9995132	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr18	21148113	12A2p6	cell line	sgMsh2	21148113	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	171	24	0	0	exonic	Garem1	synonymous SNV	Garem1:NM_001033445:exon4:c.C1185T:p.L395L	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9998416	GGA	synonymous	NA	NA	NA	NA
M6	chr18	22020869	12A2p6	cell line	sgMsh2	22020869	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	88	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon18:c.T1882A:p.L628I	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAT	nonsynonymous	T	5	TTTTT	NA
M6	chr18	22434636	12A2p6	cell line	sgMsh2	22434636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	70	0	0	NA	exonic	Asxl3	synonymous SNV	Asxl3:NM_001167777:exon6:c.A270G:p.V90V	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9985248	TAT	synonymous	NA	NA	NA	NA
M6	chr18	22515917	12A2p6	cell line	sgMsh2	22515917	A	G	SNV	Mutect2;Vardict	2	0.046	92	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon12:c.A962G:p.N321S	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999762	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	110	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998949	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	23039830	12A2p6	cell line	sgMsh2	23039830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	74	0	0	NA	exonic	Nol4	synonymous SNV	"Nol4:NM_001347509:exon1:c.T213C:p.R71R,Nol4:NM_001347510:exon1:c.T213C:p.R71R,Nol4:NM_199024:exon1:c.T213C:p.R71R"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	CAC	synonymous	C	5	CCCCC	NA
M6	chr18	23646896	12A2p6	cell line	sgMsh2	23646896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	64	3	1	0.333333333	exonic	Dtna	nonsynonymous SNV	"Dtna:NM_001285817:exon17:c.A1741G:p.S581G,Dtna:NM_001361215:exon17:c.A1741G:p.S581G,Dtna:NM_001285808:exon18:c.A1762G:p.S588G,Dtna:NM_001285810:exon18:c.A1750G:p.S584G,Dtna:NM_001361216:exon18:c.A1741G:p.S581G,Dtna:NM_001361217:exon18:c.A1741G:p.S581G,Dtna:NM_207650:exon18:c.A1741G:p.S581G,Dtna:NM_001285813:exon19:c.A1750G:p.S584G,Dtna:NM_001285807:exon22:c.A1933G:p.S645G"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	24679789	12A2p6	cell line	sgMsh2	24679789	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	70	4	1	0.25	exonic	Mocos	nonsynonymous SNV	Mocos:NM_026779:exon8:c.T1739A:p.I580N	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr18	31682054	12A2p6	cell line	sgMsh2	31682054	A	C	SNV	Mutect2;Vardict	2	0.053	85	41	0	0	exonic	Sap130	nonsynonymous SNV	"Sap130:NM_001357554:exon14:c.A1828C:p.N610H,Sap130:NM_001357555:exon14:c.A1885C:p.N629H,Sap130:NM_172965:exon14:c.A1825C:p.N609H"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9996262	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr18	31887733	12A2p6	cell line	sgMsh2	31887733	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	58	91	18	0.197802198	exonic	Wdr33	nonsynonymous SNV	Wdr33:NM_028866:exon15:c.A1555C:p.N519H	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9967463	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr18	32133218	12A2p6	cell line	sgMsh2	32133218	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	72	9	3	0.333333333	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon6:c.G461T:p.S154I,Proc:NM_001313938:exon6:c.G461T:p.S154I,Proc:NM_008934:exon6:c.G524T:p.S175I,Proc:NM_001042768:exon7:c.G488T:p.S163I"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr18	32208688	12A2p6	cell line	sgMsh2	32208688	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	120	36	0.3	exonic	Map3k2	nonsynonymous SNV	Map3k2:NM_011946:exon9:c.G644A:p.G215E	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr18	32208714	12A2p6	cell line	sgMsh2	32208714	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	167	125	35	0.28	exonic	Map3k2	nonsynonymous SNV	Map3k2:NM_011946:exon9:c.T670G:p.L224V	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999976	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	33442853	12A2p6	cell line	sgMsh2	33442853	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	102	56	13	0.232142857	exonic	Nrep	nonsynonymous SNV	"Nrep:NM_053078:exon3:c.C44T:p.P15L,Nrep:NM_001109988:exon4:c.C44T:p.P15L,Nrep:NM_001109989:exon4:c.C44T:p.P15L,Nrep:NM_001267717:exon4:c.C44T:p.P15L"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr18	34312372	12A2p6	cell line	sgMsh2	34312372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	222	63	19	0.301587302	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2143G:p.I715V,Apc:NM_007462:exon16:c.A2320G:p.I774V,Apc:NM_001360980:exon17:c.A2374G:p.I792V"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	75	38	4	0.105263158	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.541840894	2	0.9847328	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	34317049	12A2p6	cell line	sgMsh2	34317049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	121	54	16	0.296296296	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A6820G:p.R2274G,Apc:NM_007462:exon16:c.A6997G:p.R2333G,Apc:NM_001360980:exon17:c.A7051G:p.R2351G"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	34425065	12A2p6	cell line	sgMsh2	34425065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	134	0	0	NA	exonic	Pkd2l2	nonsynonymous SNV	"Pkd2l2:NM_001163004:exon6:c.T796C:p.F266L,Pkd2l2:NM_016927:exon6:c.T796C:p.F266L"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	96	57	2	0.035087719	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	3	0.6070577	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	94	126	4	0.031746032	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.6787481	TAC	synonymous	T	5	TTTTT	NA
M6	chr18	34905059	12A2p6	cell line	sgMsh2	34905059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	101	522	115	0.220306513	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon11:c.T1243C:p.Y415H	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Vardict	2	0.072	114	707	32	0.045261669	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.955487	ATT	synonymous	NA	NA	NA	NA
M6	chr18	36451119	12A2p6	cell line	sgMsh2	36451119	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	158	462	132	0.285714286	exonic	Pfdn1	nonsynonymous SNV	Pfdn1:NM_026027:exon2:c.T161G:p.L54R	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	36589454	12A2p6	cell line	sgMsh2	36589454	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	125	69	1	0.014492754	exonic	Ankhd1	synonymous SNV	Ankhd1:NM_175375:exon6:c.T1029C:p.T343T	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999945	CTC	synonymous	NA	NA	NA	NA
M6	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	91	274	19	0.069343066	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.498922803	2	0.9782176	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	36932452	12A2p6	cell line	sgMsh2	36932452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	203	0	0	NA	exonic	Pcdha1	nonsynonymous SNV	Pcdha1:NM_054072:exon1:c.C2168A:p.A723E	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr18	36947985	12A2p6	cell line	sgMsh2	36947985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	178	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.G1779A:p.A593A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	CGG	synonymous	NA	NA	NA	NA
M6	chr18	36999240	12A2p6	cell line	sgMsh2	36999240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	361	0	0	NA	exonic	Pcdha9	nonsynonymous SNV	Pcdha9:NM_138661:exon1:c.T1361C:p.V454A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
M6	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	282	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	ATT	synonymous	ATT	9	ATTATTATT	NA
M6	chr18	37006858	12A2p6	cell line	sgMsh2	37006858	G	A	SNV	Mutect2;Vardict	2	0.032	377	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.G1539A:p.A513A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	CGG	synonymous	NA	NA	NA	NA
M6	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	193	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr18	37022463	12A2p6	cell line	sgMsh2	37022463	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	153	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T2234A:p.V745E	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999907	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	37144501	12A2p6	cell line	sgMsh2	37144501	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	86	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.C533T:p.A178V	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr18	37267308	12A2p6	cell line	sgMsh2	37267308	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	150	0	0	NA	exonic	Pcdhb1	nonsynonymous SNV	Pcdhb1:NM_053126:exon1:c.C2311G:p.L771V	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Vardict	2	0.044	249	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	37302917	12A2p6	cell line	sgMsh2	37302917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	281	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.30E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr18	37309772	12A2p6	cell line	sgMsh2	37309772	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	267	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.A2134T:p.R712W	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.29E-09	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	37342041	12A2p6	cell line	sgMsh2	37342041	G	A	SNV	Mutect2;Vardict	2	0.027	198	1	0	0	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.G229A:p.A77T	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	3	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	188	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999992	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr18	37402875	12A2p6	cell line	sgMsh2	37402875	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	296	0	0	NA	exonic	Pcdhb9	synonymous SNV	Pcdhb9:NM_053134:exon1:c.T1921C:p.L641L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.48E-09	GTT	synonymous	NA	NA	NA	NA
M6	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	82	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9942789	ATT	nonsynonymous	T	5	TTTTT	NA
M6	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	108	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9990267	CAG	synonymous	NA	NA	NA	NA
M6	chr18	37478269	12A2p6	cell line	sgMsh2	37478269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	104	0	0	NA	exonic	Pcdhb16	frameshift deletion	Pcdhb16:NM_053141:exon1:c.281delA:p.K95Nfs*10	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr18	37515185	12A2p6	cell line	sgMsh2	37515185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	381	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1366G:p.T456A	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.656	246	10	0	0	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.42E-08	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr18	37687064	12A2p6	cell line	sgMsh2	37687064	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	195	2	2	1	exonic	Pcdhga4	synonymous SNV	Pcdhga4:NM_033587:exon1:c.C1665T:p.N555N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	ACG	synonymous	NA	NA	NA	NA
M6	chr18	37717080	12A2p6	cell line	sgMsh2	37717080	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	181	5	0	0	exonic	Pcdhga7	synonymous SNV	Pcdhga7:NM_033590:exon1:c.A2139G:p.L713L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.08E-09	TAT	synonymous	NA	NA	NA	NA
M6	chr18	37742541	12A2p6	cell line	sgMsh2	37742541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	198	15	1	0.066666667	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.A301G:p.K101E	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr18	37753480	12A2p6	cell line	sgMsh2	37753480	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	157	1	0	0	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1702A:p.D568N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr18	37753772	12A2p6	cell line	sgMsh2	37753772	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	210	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1994A:p.S665N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr18	37758106	12A2p6	cell line	sgMsh2	37758106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	122	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A2166G:p.L722L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999524	TAC	synonymous	NA	NA	NA	NA
M6	chr18	37766536	12A2p6	cell line	sgMsh2	37766536	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	72	0	0	NA	exonic	Pcdhga12	frameshift deletion	Pcdhga12:NM_033595:exon1:c.420delA:p.M142fs*0	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr18	37768454	12A2p6	cell line	sgMsh2	37768454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	99	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A2338C:p.I780L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	37825061	12A2p6	cell line	sgMsh2	37825061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	92	119	35	0.294117647	exonic	Gm37013;Gm38666;Gm38667;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc4;Pcdhgc5	nonsynonymous SNV	"Gm37013:NM_001174154:exon2:c.A2426G:p.Q809R,Gm38666:NM_001301256:exon2:c.A2450G:p.Q817R,Gm38667:NM_001301259:exon2:c.A2423G:p.Q808R,Pcdhgb1:NM_033574:exon2:c.A2423G:p.Q808R,Pcdhgb2:NM_033575:exon2:c.A2453G:p.Q818R,Pcdhgb4:NM_033576:exon2:c.A2405G:p.Q802R,Pcdhgb5:NM_033577:exon2:c.A2447G:p.Q816R,Pcdhgb6:NM_033578:exon2:c.A2459G:p.Q820R,Pcdhgb7:NM_033579:exon2:c.A2456G:p.Q819R,Pcdhgc3:NM_033581:exon2:c.A2471G:p.Q824R,Pcdhgc4:NM_033582:exon2:c.A2492G:p.Q831R,Pcdhgc5:NM_033583:exon2:c.A2501G:p.Q834R,Pcdhga1:NM_033584:exon2:c.A2462G:p.Q821R,Pcdhga2:NM_033585:exon2:c.A2462G:p.Q821R,Pcdhga3:NM_033586:exon2:c.A2453G:p.Q818R,Pcdhga4:NM_033587:exon2:c.A2459G:p.Q820R,Pcdhga5:NM_033588:exon2:c.A2465G:p.Q822R,Pcdhga6:NM_033589:exon2:c.A2465G:p.Q822R,Pcdhga7:NM_033590:exon2:c.A2474G:p.Q825R,Pcdhga8:NM_033591:exon2:c.A2465G:p.Q822R,Pcdhga9:NM_033592:exon2:c.A2465G:p.Q822R,Pcdhga10:NM_033593:exon2:c.A2459G:p.Q820R,Pcdhga11:NM_033594:exon2:c.A2468G:p.Q823R,Pcdhga12:NM_033595:exon2:c.A2465G:p.Q822R"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	61	33	0	0	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.7941615	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	110	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9885914	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr18	38283912	12A2p6	cell line	sgMsh2	38283912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	82	0	0	NA	exonic	Pcdh12	synonymous SNV	Pcdh12:NM_017378:exon1:c.A159G:p.L53L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	TTA	synonymous	NA	NA	NA	NA
M6	chr18	38308372	12A2p6	cell line	sgMsh2	38308372	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	126	56	13	0.232142857	exonic	Rnf14	nonsynonymous SNV	"Rnf14:NM_001164622:exon4:c.C436T:p.P146S,Rnf14:NM_020012:exon5:c.C814T:p.P272S,Rnf14:NM_001164621:exon6:c.C814T:p.P272S,Rnf14:NM_001361264:exon6:c.C814T:p.P272S,Rnf14:NM_001361266:exon6:c.C814T:p.P272S,Rnf14:NM_001361267:exon6:c.C814T:p.P272S,Rnf14:NM_001361265:exon7:c.C814T:p.P272S,Rnf14:NM_001361268:exon7:c.C814T:p.P272S,Rnf14:NM_001361269:exon7:c.C814T:p.P272S"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr18	39296795	12A2p6	cell line	sgMsh2	39296795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	100	5	2	0.4	exonic	Arhgap26	nonsynonymous SNV	"Arhgap26:NM_001361073:exon19:c.C1709T:p.T570M,Arhgap26:NM_001374831:exon19:c.C1709T:p.T570M,Arhgap26:NM_175164:exon19:c.C1709T:p.T570M"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	135	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9998697	GTT	nonsynonymous	T	5	TTTTT	NA
M6	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	78	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.95713	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr18	43563329	12A2p6	cell line	sgMsh2	43563329	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	125	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon11:c.G1554T:p.E518D	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9996349	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr18	45685341	12A2p6	cell line	sgMsh2	45685341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	108	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	"Kcnn2:NM_080465:exon8:c.A1504G:p.I502V,Kcnn2:NM_001312905:exon11:c.A2329G:p.I777V"	18qC	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	131	2	0	0	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9998929	AAG	synonymous	NA	NA	NA	NA
M6	chr18	46248930	12A2p6	cell line	sgMsh2	46248930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	69	50	16	0.32	exonic	Pggt1b	nonsynonymous SNV	Pggt1b:NM_172627:exon7:c.G784A:p.G262R	18qC	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.3684	57	7	0	0	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M6	chr18	46881476	12A2p6	cell line	sgMsh2	46881476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	203	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon9:c.T1640C:p.M547T	18qC	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr18	54895603	12A2p6	cell line	sgMsh2	54895603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	33	58	17	0.293103448	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon5:c.A2459G:p.Y820C,Zfp608:NM_175751:exon6:c.A3737G:p.Y1246C"	18qD3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9832599	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	78	117	2	0.017094017	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9296654	CTA	synonymous	NA	NA	NA	NA
M6	chr18	61083359	12A2p6	cell line	sgMsh2	61083359	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	74	0	0	NA	exonic	Pdgfrb	synonymous SNV	"Pdgfrb:NM_001146268:exon23:c.T3276G:p.A1092A,Pdgfrb:NM_008809:exon23:c.T3273G:p.A1091A"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	CTG	synonymous	NA	NA	NA	NA
M6	chr18	61311113	12A2p6	cell line	sgMsh2	61311113	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	100	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon5:c.A978C:p.Q326H,Ppargc1b:NM_001364996:exon6:c.A1026C:p.Q342H"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr18	63092879	12A2p6	cell line	sgMsh2	63092879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	86	0	0	NA	exonic	Piezo2	synonymous SNV	Piezo2:NM_001039485:exon19:c.T2685C:p.G895G	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CAC	synonymous	NA	NA	NA	NA
M6	chr18	63106236	12A2p6	cell line	sgMsh2	63106236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	72	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon16:c.T2272C:p.Y758H	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr18	63736404	12A2p6	cell line	sgMsh2	63736404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	110	24	1	0.041666667	exonic	Wdr7	synonymous SNV	"Wdr7:NM_001014981:exon9:c.T864C:p.S288S,Wdr7:NM_001360837:exon9:c.T864C:p.S288S"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.6709927	GTT	synonymous	NA	NA	NA	NA
M6	chr18	67218523	12A2p6	cell line	sgMsh2	67218523	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	129	1	1	1	exonic	Gnal	nonsynonymous SNV	"Gnal:NM_010307:exon11:c.A951T:p.E317D,Gnal:NM_177137:exon11:c.A1152T:p.E384D"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr18	67623224	12A2p6	cell line	sgMsh2	67623224	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	102	9	1	0.111111111	exonic	Cep76	synonymous SNV	"Cep76:NM_001081073:exon10:c.A1536G:p.P512P,Cep76:NM_001357523:exon10:c.A1002G:p.P334P"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTG	synonymous	NA	NA	NA	NA
M6	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	78	26	2	0.076923077	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	3	0.618838	TTT	synonymous	NA	NA	NA	NA
M6	chr18	67841306	12A2p6	cell line	sgMsh2	67841306	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	99	20	2	0.1	exonic	Cep192	nonsynonymous SNV	Cep192:NM_027556:exon20:c.T3479C:p.L1160P	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9968246	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	68314063	12A2p6	cell line	sgMsh2	68314063	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.322	173	137	35	0.255474453	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.T1017A:p.N339K,Rnmt:NM_026440:exon7:c.T1017A:p.N339K,Rnmt:NM_001361002:exon8:c.T1017A:p.N339K"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999984	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr18	68314065	12A2p6	cell line	sgMsh2	68314065	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.322	174	130	35	0.269230769	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.A1019C:p.Y340S,Rnmt:NM_026440:exon7:c.A1019C:p.Y340S,Rnmt:NM_001361002:exon8:c.A1019C:p.Y340S"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999985	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	127	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9998614	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr18	73937142	12A2p6	cell line	sgMsh2	73937142	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	91	1	0	0	exonic	Mapk4	frameshift deletion	"Mapk4:NM_001360936:exon2:c.142delA:p.M48Cfs*15,Mapk4:NM_172632:exon3:c.679delA:p.M227Cfs*15"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6	chr18	74949253	12A2p6	cell line	sgMsh2	74949253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	37	0	0	NA	exonic	Lipg	nonsynonymous SNV	Lipg:NM_010720:exon5:c.G598A:p.E200K	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9870974	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr18	75230060	12A2p6	cell line	sgMsh2	75230060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	82	19	0.231707317	exonic	Dym	nonsynonymous SNV	Dym:NM_027727:exon15:c.A1634G:p.N545S	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	50	13	0	0	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	3	0.005954675	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	76262625	12A2p6	cell line	sgMsh2	76262625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	116	203	56	0.275862069	exonic	Smad2	nonsynonymous SNV	"Smad2:NM_001311070:exon1:c.T134C:p.V45A,Smad2:NM_001252481:exon2:c.T134C:p.V45A,Smad2:NM_010754:exon2:c.T134C:p.V45A"	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	77286450	12A2p6	cell line	sgMsh2	77286450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	109	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon2:c.G216T:p.G72G	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	GGC	synonymous	NA	NA	NA	NA
M6	chr18	78120159	12A2p6	cell line	sgMsh2	78120159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	86	2	2	1	exonic	Slc14a1	nonsynonymous SNV	Slc14a1:NM_001171010:exon2:c.T136C:p.W46R	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	127	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9997876	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr18	89013091	12A2p6	cell line	sgMsh2	89013091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	79	6	1	0.166666667	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1925G:p.I642S	18qE4	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr18	89128765	12A2p6	cell line	sgMsh2	89128765	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	135	13	0	0	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon47:c.T6431C:p.V2144A	18qE4	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	3276763	12A2p6	cell line	sgMsh2	3276763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	88	40	2	0.05	exonic	Ighmbp2	nonsynonymous SNV	Ighmbp2:NM_009212:exon5:c.G701A:p.G234D	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	158	249	27	0.108433735	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr19	3591809	12A2p6	cell line	sgMsh2	3591809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	160	232	30	0.129310345	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon20:c.T4152C:p.S1384S	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6	chr19	3896637	12A2p6	cell line	sgMsh2	3896637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	160	42	4	0.095238095	exonic	Tcirg1	synonymous SNV	"Tcirg1:NM_001136091:exon18:c.T2215C:p.L739L,Tcirg1:NM_001167784:exon18:c.T2215C:p.L739L,Tcirg1:NM_016921:exon18:c.T2215C:p.L739L"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M6	chr19	3943578	12A2p6	cell line	sgMsh2	3943578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	67	13	0	0	exonic	Unc93b1	nonsynonymous SNV	"Unc93b1:NM_001161428:exon8:c.T1019G:p.L340R,Unc93b1:NM_019449:exon8:c.T1019G:p.L340R"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	3997290	12A2p6	cell line	sgMsh2	3997290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	119	0	0	NA	exonic	Tbx10	synonymous SNV	"Tbx10:NM_001001320:exon4:c.T393C:p.S131S,Tbx10:NM_011533:exon4:c.T270C:p.S90S"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M6	chr19	4324783	12A2p6	cell line	sgMsh2	4324783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	69	139	19	0.136690647	exonic	Kdm2a	synonymous SNV	Kdm2a:NM_001001984:exon17:c.A2319G:p.V773V	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6	chr19	4450930	12A2p6	cell line	sgMsh2	4450930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	173	7	0	0	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1091G:p.Q364R	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	CACCT	10	CACCTCACCT	NA
M6	chr19	4602557	12A2p6	cell line	sgMsh2	4602557	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	120	35	0	0	exonic	Pcx	nonsynonymous SNV	"Pcx:NM_008797:exon5:c.A571G:p.I191V,Pcx:NM_001162946:exon6:c.A574G:p.I192V"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.633	110	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	205	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	4751156	12A2p6	cell line	sgMsh2	4751156	G	A	SNV	Mutect2;Vardict	2	0.028	263	3	0	0	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon36:c.G6904A:p.D2302N	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	302	65	0	0	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	4864044	12A2p6	cell line	sgMsh2	4864044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	142	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon15:c.A1784G:p.Y595C	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	4872343	12A2p6	cell line	sgMsh2	4872343	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	271	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon3:c.G275T:p.R92M	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	138	3	0	0	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	4988880	12A2p6	cell line	sgMsh2	4988880	A	C	SNV	Mutect2;Vardict	2	0.056	96	0	0	NA	exonic	Npas4	synonymous SNV	Npas4:NM_153553:exon2:c.T183G:p.P61P	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M6	chr19	5026042	12A2p6	cell line	sgMsh2	5026042	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	137	13	1	0.076923077	exonic	Slc29a2	synonymous SNV	Slc29a2:NM_007854:exon3:c.G126A:p.R42R	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGT	synonymous	NA	NA	NA	NA
M6	chr19	5026119	12A2p6	cell line	sgMsh2	5026119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	159	13	1	0.076923077	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon3:c.A203G:p.N68S	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5069793	12A2p6	cell line	sgMsh2	5069793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	105	0	0	NA	exonic	Cd248	synonymous SNV	Cd248:NM_054042:exon1:c.T1668C:p.T556T	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6	chr19	5098235	12A2p6	cell line	sgMsh2	5098235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	43	0	0	NA	exonic	Cnih2	nonsynonymous SNV	Cnih2:NM_009920:exon1:c.A29G:p.Y10C	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	5111426	12A2p6	cell line	sgMsh2	5111426	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	130	47	0	0	exonic	Klc2	nonsynonymous SNV	"Klc2:NM_001369360:exon8:c.A1055G:p.E352G,Klc2:NM_001369361:exon8:c.A1055G:p.E352G,Klc2:NM_001369362:exon8:c.A1055G:p.E352G,Klc2:NM_008451:exon8:c.A1055G:p.E352G"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5384713	12A2p6	cell line	sgMsh2	5384713	T	C	SNV	Mutect2;Vardict	2	0.04	128	141	4	0.028368794	exonic	Sart1	nonsynonymous SNV	Sart1:NM_016882:exon5:c.A565G:p.T189A	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5390984	12A2p6	cell line	sgMsh2	5390984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	98	1	1	1	exonic	Tsga10ip	nonsynonymous SNV	Tsga10ip:NM_001373978:exon6:c.A1322G:p.Y441C	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	5426195	12A2p6	cell line	sgMsh2	5426195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	96	78	8	0.102564103	exonic	AI837181	nonsynonymous SNV	AI837181:NM_134149:exon2:c.T385C:p.Y129H	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	5485091	12A2p6	cell line	sgMsh2	5485091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	177	42	5	0.119047619	exonic	Mus81	synonymous SNV	Mus81:NM_027877:exon9:c.A909G:p.L303L	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6	chr19	5498732	12A2p6	cell line	sgMsh2	5498732	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	321	6	0	0	exonic	Snx32	synonymous SNV	"Snx32:NM_001024560:exon2:c.T132C:p.T44T,Snx32:NM_001362042:exon2:c.T132C:p.T44T"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6	chr19	5570890	12A2p6	cell line	sgMsh2	5570890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	116	2	0	0	exonic	Ap5b1	synonymous SNV	"Ap5b1:NM_001033448:exon2:c.T2337C:p.R779R,Ap5b1:NM_001362046:exon3:c.T2337C:p.R779R"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M6	chr19	5655062	12A2p6	cell line	sgMsh2	5655062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	110	17	1	0.058823529	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon8:c.T1504C:p.F502L,Sipa1:NM_001164568:exon8:c.T1504C:p.F502L,Sipa1:NM_001164480:exon9:c.T1504C:p.F502L,Sipa1:NM_011379:exon9:c.T1504C:p.F502L,Sipa1:NM_001164481:exon10:c.T1504C:p.F502L"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	163	93	19	0.204301075	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5675046	12A2p6	cell line	sgMsh2	5675046	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	99	74	5	0.067567568	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon22:c.C3533T:p.A1178V	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5702130	12A2p6	cell line	sgMsh2	5702130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	97	86	9	0.104651163	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2339G:p.D780G	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	5751857	12A2p6	cell line	sgMsh2	5751857	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	58	296	6	0.02027027	exonic	Ltbp3	frameshift deletion	Ltbp3:NM_008520:exon16:c.2202delG:p.G736Afs*45	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr19	5757602	12A2p6	cell line	sgMsh2	5757602	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	217	354	56	0.15819209	exonic	Ltbp3	synonymous SNV	Ltbp3:NM_008520:exon26:c.C3453T:p.P1151P	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCC	synonymous	C	5	CCCCC	NA
M6	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	125	416	47	0.112980769	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	5766276	12A2p6	cell line	sgMsh2	5766276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	171	201	32	0.15920398	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon6:c.T890A:p.L297Q,Scyl1:NM_001361922:exon6:c.T890A:p.L297Q,Scyl1:NM_023912:exon6:c.T890A:p.L297Q"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	5770781	12A2p6	cell line	sgMsh2	5770781	A	-	Deletion	Mutect2;Vardict	2	0.048	137	202	1	0.004950495	exonic	Scyl1	frameshift deletion	"Scyl1:NM_001361921:exon2:c.194delT:p.F65Sfs*27,Scyl1:NM_001361922:exon2:c.194delT:p.F65Sfs*27,Scyl1:NM_023912:exon2:c.194delT:p.F65Sfs*27"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr19	5940924	12A2p6	cell line	sgMsh2	5940924	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	57	72	9	0.125	exonic	Pola2	nonsynonymous SNV	Pola2:NM_008893:exon18:c.A1741C:p.K581Q	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	5972998	12A2p6	cell line	sgMsh2	5972998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	145	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon7:c.A1116G:p.V372V	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6	chr19	6049233	12A2p6	cell line	sgMsh2	6049233	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	175	48	4	0.083333333	exonic	Syvn1	stopgain	"Syvn1:NM_001164709:exon6:c.C511T:p.Q171X,Syvn1:NM_028769:exon6:c.C511T:p.Q171X"	19qA	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr19	6077057	12A2p6	cell line	sgMsh2	6077057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	36	40	4	0.1	exonic	Vps51	nonsynonymous SNV	Vps51:NM_001081041:exon1:c.A122G:p.Y41C	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9189269	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	6082695	12A2p6	cell line	sgMsh2	6082695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	85	140	16	0.114285714	exonic	Zfpl1	nonsynonymous SNV	"Zfpl1:NM_001356994:exon4:c.T298C:p.C100R,Zfpl1:NM_024231:exon4:c.T298C:p.C100R"	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	2	0.917374186	1	0.9942244	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	6112724	12A2p6	cell line	sgMsh2	6112724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	194	2	0	0	exonic	Naaladl1	synonymous SNV	Naaladl1:NM_001009546:exon12:c.T1461C:p.S487S	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.9288032	GTA	synonymous	NA	NA	NA	NA
M6	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Vardict	2	0.037	113	0	0	NA	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	76	50	9	0.18	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.7212975	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	6999448	12A2p6	cell line	sgMsh2	6999448	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	209	4	0	0	exonic	Fermt3	nonsynonymous SNV	"Fermt3:NM_001362399:exon15:c.G1891A:p.E631K,Fermt3:NM_153795:exon15:c.G1891A:p.E631K"	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1.15E-09	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr19	7025374	12A2p6	cell line	sgMsh2	7025374	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.136	207	482	1	0.002074689	exonic	Stip1	frameshift deletion	Stip1:NM_016737:exon10:c.1186delC:p.L396Cfs*27	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	NA	NA	AGT	frameshift	NA	NA	NA	-1
M6	chr19	7097161	12A2p6	cell line	sgMsh2	7097161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	100	2	0	0	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.C20T:p.A7V	19qA	chr19-6054831-7683235	8	6	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.6626093	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	8071840	12A2p6	cell line	sgMsh2	8071840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	506	0	0	NA	exonic	Slc22a28	nonsynonymous SNV	Slc22a28:NM_001013820:exon6:c.A1043G:p.N348S	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	2	0.6505125	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr19	8386728	12A2p6	cell line	sgMsh2	8386728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	348	0	0	NA	exonic	Slc22a30	nonsynonymous SNV	Slc22a30:NM_177002:exon3:c.T583C:p.S195P	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9999036	GAG	nonsynonymous	GGAG	8	GGAGGGAG	NA
M6	chr19	8764541	12A2p6	cell line	sgMsh2	8764541	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	296	187	5	0.026737968	exonic	Nxf1	nonsynonymous SNV	"Nxf1:NM_001276704:exon9:c.G838A:p.D280N,Nxf1:NM_016813:exon9:c.G838A:p.D280N"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr19	8764999	12A2p6	cell line	sgMsh2	8764999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	248	192	26	0.135416667	exonic	Nxf1	synonymous SNV	"Nxf1:NM_001276704:exon10:c.T981C:p.C327C,Nxf1:NM_016813:exon10:c.T981C:p.C327C"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.25E-08	GTG	synonymous	NA	NA	NA	NA
M6	chr19	8775087	12A2p6	cell line	sgMsh2	8775087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	109	51	6	0.117647059	exonic	Taf6l	synonymous SNV	"Taf6l:NM_001177798:exon12:c.T1239C:p.P413P,Taf6l:NM_146092:exon12:c.T1314C:p.P438P"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998877	AAG	synonymous	NA	NA	NA	NA
M6	chr19	8778120	12A2p6	cell line	sgMsh2	8778120	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	126	20	4	0.2	exonic	Taf6l	synonymous SNV	"Taf6l:NM_001177798:exon10:c.G873A:p.G291G,Taf6l:NM_146092:exon10:c.G948A:p.G316G"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.963603	CCC	synonymous	NA	NA	NA	NA
M6	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	289	388	18	0.046391753	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	2	0.5251059	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	8804565	12A2p6	cell line	sgMsh2	8804565	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	211	19	0	0	exonic	Zbtb3	nonsynonymous SNV	"Zbtb3:NM_001098237:exon2:c.T1541C:p.L514P,Zbtb3:NM_133759:exon2:c.T1541C:p.L514P"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	153	488	15	0.030737705	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.26E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	8907247	12A2p6	cell line	sgMsh2	8907247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	184	483	58	0.120082816	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon5:c.T413C:p.V138A,Ganab:NM_008060:exon5:c.T413C:p.V138A"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999934	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	8927699	12A2p6	cell line	sgMsh2	8927699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	90	8	2	0.25	exonic	Rom1	synonymous SNV	Rom1:NM_009073:exon3:c.A1026G:p.E342E	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.992256	GTT	synonymous	NA	NA	NA	NA
M6	chr19	9003288	12A2p6	cell line	sgMsh2	9003288	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	326	392	44	0.112244898	exonic	Ahnak	synonymous SNV	Ahnak:NM_009643:exon5:c.A1935G:p.E645E	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9999997	AAG	synonymous	NA	NA	NA	NA
M6	chr19	9004009	12A2p6	cell line	sgMsh2	9004009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	289	482	61	0.126556017	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A2656G:p.M886V	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	2	0.5160095	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	9015943	12A2p6	cell line	sgMsh2	9015943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	267	550	70	0.127272727	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14590G:p.M4864V	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9912384	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	58	87	18	0.206896552	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.000857228	GTC	synonymous	NA	NA	NA	NA
M6	chr19	10207246	12A2p6	cell line	sgMsh2	10207246	T	G	SNV	Mutect2;Vardict	2	0.031	212	363	10	0.027548209	exonic	Tmem258	nonsynonymous SNV	"Tmem258:NM_001163431:exon3:c.T181G:p.F61V,Tmem258:NM_026919:exon3:c.T196G:p.F66V"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	10503010	12A2p6	cell line	sgMsh2	10503010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	231	174	26	0.149425287	exonic	Sdhaf2	nonsynonymous SNV	Sdhaf2:NM_025333:exon4:c.A484C:p.K162Q	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999906	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	10664259	12A2p6	cell line	sgMsh2	10664259	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.125	73	0	0	NA	exonic	Vwce	frameshift deletion	Vwce:NM_027913:exon20:c.2348delT:p.L784fs*0	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr19	10723153	12A2p6	cell line	sgMsh2	10723153	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	123	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon6:c.C986G:p.T329R	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.9264192	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr19	10726376	12A2p6	cell line	sgMsh2	10726376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	224	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon3:c.A321C:p.Q107H	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.9999964	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	10791167	12A2p6	cell line	sgMsh2	10791167	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	82	0	0	NA	exonic	Cd6	nonsynonymous SNV	"Cd6:NM_001037801:exon10:c.T1457C:p.L486P,Cd6:NM_009852:exon11:c.T1574C:p.L525P"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9619151	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	10918761	12A2p6	cell line	sgMsh2	10918761	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	309	0	0	NA	exonic	Zp1	nonsynonymous SNV	Zp1:NM_009580:exon3:c.T599G:p.V200G	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	10940395	12A2p6	cell line	sgMsh2	10940395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	184	0	0	NA	exonic	Ptgdr2	nonsynonymous SNV	Ptgdr2:NM_009962:exon3:c.T275A:p.V92E	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9986655	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	138	86	1	0.011627907	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9972209	GTA	synonymous	NA	NA	NA	NA
M6	chr19	11977986	12A2p6	cell line	sgMsh2	11977986	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	103	123	10	0.081300813	exonic	Osbp	nonsynonymous SNV	Osbp:NM_001033174:exon4:c.C1001A:p.A334D	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999833	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr19	11978656	12A2p6	cell line	sgMsh2	11978656	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	302	147	3	0.020408163	exonic	Osbp	nonsynonymous SNV	Osbp:NM_001033174:exon6:c.G1144A:p.A382T	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	12210204	12A2p6	cell line	sgMsh2	12210204	T	C	SNV	Mutect2;MuSe;Vardict	3	0.117	304	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.T637C:p.L213L	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.9999999	CTT	synonymous	NA	NA	NA	NA
M6	chr19	12241072	12A2p6	cell line	sgMsh2	12241072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	350	0	0	NA	exonic	Olfr262	synonymous SNV	Olfr262:NM_146688:exon1:c.A588G:p.V196V	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.9925643	GTA	synonymous	NA	NA	NA	NA
M6	chr19	12422509	12A2p6	cell line	sgMsh2	12422509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	370	0	0	NA	exonic	Olfr1441	synonymous SNV	Olfr1441:NM_146683:exon1:c.C199T:p.L67L	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.8750799	TCT	synonymous	NA	NA	NA	NA
M6	chr19	12463289	12A2p6	cell line	sgMsh2	12463289	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	249	1	0	0	exonic	Mpeg1	nonsynonymous SNV	"Mpeg1:NM_001374668:exon2:c.T2089G:p.L697V,Mpeg1:NM_010821:exon2:c.T2089G:p.L697V"	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9999989	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	12719168	12A2p6	cell line	sgMsh2	12719168	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	174	0	0	NA	exonic	Keg1	nonsynonymous SNV	Keg1:NM_029550:exon6:c.T874C:p.C292R	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	0.9391114	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	12778971	12A2p6	cell line	sgMsh2	12778971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	159	267	28	0.104868914	exonic	Zfp91	nonsynonymous SNV	Zfp91:NM_053009:exon3:c.A508G:p.T170A	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.9176713	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	12935450	12A2p6	cell line	sgMsh2	12935450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	266	0	0	NA	exonic	Olfr1449	synonymous SNV	Olfr1449:NM_146303:exon1:c.C711A:p.A237A	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9995756	CCT	synonymous	NA	NA	NA	NA
M6	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	451	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	TTG	synonymous	NA	NA	NA	NA
M6	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Vardict	2	0.022	341	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.118024749	NA	NA	CTA	frameshift	NA	NA	NA	-1
M6	chr19	13165429	12A2p6	cell line	sgMsh2	13165429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	365	0	0	NA	exonic	Olfr1461	synonymous SNV	Olfr1461:NM_146302:exon1:c.T414C:p.T138T	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9999989	CTT	synonymous	NA	NA	NA	NA
M6	chr19	13364838	12A2p6	cell line	sgMsh2	13364838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	234	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T209G:p.F70C	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9837789	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	13445599	12A2p6	cell line	sgMsh2	13445599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	761	0	0	NA	exonic	Olfr1471	nonsynonymous SNV	Olfr1471:NM_207132:exon1:c.A586G:p.T196A	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	2	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	13453837	12A2p6	cell line	sgMsh2	13453837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	474	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.C679T:p.R227C	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	1.33E-09	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Vardict	2	0.019	642	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.101930465	3	1	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M6	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	415	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	13838751	12A2p6	cell line	sgMsh2	13838751	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	353	0	0	NA	exonic	Olfr1501	nonsynonymous SNV	Olfr1501:NM_146633:exon1:c.C421A:p.L141M	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.5346801	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr19	13919786	12A2p6	cell line	sgMsh2	13919786	C	T	SNV	Mutect2;MuSe;Vardict	3	0.123	470	0	0	NA	exonic	Olfr1505	synonymous SNV	Olfr1505:NM_001011850:exon1:c.C765T:p.L255L	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	1.95E-09	TCA	synonymous	NA	NA	NA	NA
M6	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	199	529	87	0.164461248	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8350247	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.022	381	72	3	0.041666667	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.118024749	3	1	TAC	synonymous	NA	NA	NA	NA
M6	chr19	16691883	12A2p6	cell line	sgMsh2	16691883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	166	39	2	0.051282051	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon35:c.G3963A:p.Q1321Q	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.590123746	2	0.9999548	CCT	synonymous	NA	NA	NA	NA
M6	chr19	16754360	12A2p6	cell line	sgMsh2	16754360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	196	64	3	0.046875	exonic	Vps13a	nonsynonymous SNV	Vps13a:NM_173028:exon6:c.A387C:p.E129D	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9769294	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	16759981	12A2p6	cell line	sgMsh2	16759981	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	103	46	6	0.130434783	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon4:c.T243A:p.A81A	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	0.6999601	CAG	synonymous	NA	NA	NA	NA
M6	chr19	17395292	12A2p6	cell line	sgMsh2	17395292	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	257	772	117	0.151554404	exonic	Rfk	nonsynonymous SNV	Rfk:NM_019437:exon2:c.T177A:p.H59Q	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9996743	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr19	17565335	12A2p6	cell line	sgMsh2	17565335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	154	0	0	NA	exonic	Pcsk5	synonymous SNV	"Pcsk5:NM_001163144:exon18:c.C2319T:p.C773C,Pcsk5:NM_001190483:exon18:c.C2319T:p.C773C"	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9404253	CGC	synonymous	NA	NA	NA	NA
M6	chr19	18642183	12A2p6	cell line	sgMsh2	18642183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	183	31	5	0.161290323	exonic	Nmrk1	synonymous SNV	Nmrk1:NM_145497:exon7:c.A399G:p.V133V	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.5802558	TAT	synonymous	NA	NA	NA	NA
M6	chr19	18854182	12A2p6	cell line	sgMsh2	18854182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	210	4	2	0.5	exonic	Trpm6	synonymous SNV	Trpm6:NM_153417:exon26:c.T4410C:p.D1470D	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9577518	ATG	synonymous	NA	NA	NA	NA
M6	chr19	20804657	12A2p6	cell line	sgMsh2	20804657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	372	0	0	NA	exonic	Tmc1	nonsynonymous SNV	Tmc1:NM_028953:exon16:c.A1696G:p.T566A	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	21417045	12A2p6	cell line	sgMsh2	21417045	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	354	131	16	0.122137405	exonic	Gda	nonsynonymous SNV	Gda:NM_010266:exon7:c.G669T:p.M223I	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	1.15E-08	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Vardict	2	0.046	117	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999984	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr19	23350619	12A2p6	cell line	sgMsh2	23350619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	247	1	0	0	exonic	Mamdc2	nonsynonymous SNV	Mamdc2:NM_174857:exon9:c.A1384G:p.K462E	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9984362	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	23708921	12A2p6	cell line	sgMsh2	23708921	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	86	38	11	0.289473684	exonic	Ptar1	nonsynonymous SNV	Ptar1:NM_028208:exon5:c.C596T:p.S199F	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	0.9539176	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr19	25158466	12A2p6	cell line	sgMsh2	25158466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	163	2	0	0	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon29:c.A3647G:p.Y1216C	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9823914	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	25171612	12A2p6	cell line	sgMsh2	25171612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	138	5	0	0	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon35:c.A4453G:p.T1485A	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9258456	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	25409129	12A2p6	cell line	sgMsh2	25409129	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	236	48	6	0.125	exonic	Kank1	synonymous SNV	"Kank1:NM_001348180:exon5:c.G81A:p.K27K,Kank1:NM_181404:exon5:c.G81A:p.K27K"	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9999985	AGA	synonymous	AAAG	9	AAAGAAAGA	NA
M6	chr19	25409764	12A2p6	cell line	sgMsh2	25409764	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	183	38	6	0.157894737	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon5:c.T716C:p.V239A,Kank1:NM_181404:exon5:c.T716C:p.V239A"	19qB	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.996369	GTC	nonsynonymous	TCCG	8	TCCGTCCG	NA
M6	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	265	368	62	0.168478261	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.9999998	CTC	synonymous	NA	NA	NA	NA
M6	chr19	28835324	12A2p6	cell line	sgMsh2	28835324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	106	0	0	NA	exonic	Slc1a1	nonsynonymous SNV	Slc1a1:NM_009199:exon1:c.T83C:p.V28A	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9991749	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	29311810	12A2p6	cell line	sgMsh2	29311810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	195	218	29	0.133027523	exonic	Jak2	nonsynonymous SNV	"Jak2:NM_001048177:exon24:c.C3361T:p.L1121F,Jak2:NM_008413:exon25:c.C3361T:p.L1121F"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9984353	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr19	29373657	12A2p6	cell line	sgMsh2	29373657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	309	3	0	0	exonic	Cd274	nonsynonymous SNV	Cd274:NM_021893:exon3:c.T152G:p.L51R	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.7881194	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	245	7	0	0	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9999903	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Vardict	2	0.028	186	182	0	0	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1.00E-09	TCG	synonymous	NA	NA	NA	NA
M6	chr19	29952834	12A2p6	cell line	sgMsh2	29952834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	162	174	17	0.097701149	exonic	Il33	nonsynonymous SNV	"Il33:NM_001164724:exon4:c.A328C:p.I110L,Il33:NM_133775:exon4:c.A328C:p.I110L,Il33:NM_001360725:exon5:c.A328C:p.I110L"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7480043	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	29958921	12A2p6	cell line	sgMsh2	29958921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	124	255	26	0.101960784	exonic	Il33	synonymous SNV	"Il33:NM_001164724:exon8:c.T681C:p.V227V,Il33:NM_133775:exon8:c.T681C:p.V227V,Il33:NM_001360725:exon9:c.T681C:p.V227V"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.7653455	TTT	synonymous	NA	NA	NA	NA
M6	chr19	30075201	12A2p6	cell line	sgMsh2	30075201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	215	322	41	0.127329193	exonic	Uhrf2	nonsynonymous SNV	Uhrf2:NM_144873:exon6:c.A1094G:p.E365G	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9406245	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	30087253	12A2p6	cell line	sgMsh2	30087253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	144	305	42	0.137704918	exonic	Uhrf2	synonymous SNV	Uhrf2:NM_144873:exon12:c.T1848C:p.V616V	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.7108253	TTG	synonymous	NA	NA	NA	NA
M6	chr19	30624734	12A2p6	cell line	sgMsh2	30624734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	363	0	0	NA	exonic	Prkg1	nonsynonymous SNV	"Prkg1:NM_001013833:exon10:c.A1076G:p.D359G,Prkg1:NM_011160:exon10:c.A1121G:p.D374G"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9974751	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr19	32498438	12A2p6	cell line	sgMsh2	32498438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	239	205	30	0.146341463	exonic	Minpp1	nonsynonymous SNV	Minpp1:NM_010799:exon4:c.A970G:p.T324A	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	2	0.9999821	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	33514261	12A2p6	cell line	sgMsh2	33514261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	325	0	0	NA	exonic	Lipo4	synonymous SNV	Lipo4:NM_001323386:exon3:c.A315G:p.A105A	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.5690734	CTG	synonymous	NA	NA	NA	NA
M6	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Vardict	2	0.031	363	11	0	0	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr19	33782196	12A2p6	cell line	sgMsh2	33782196	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	109	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon5:c.T639A:p.A213A	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9981	AAG	synonymous	NA	NA	NA	NA
M6	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	337	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	TAC	synonymous	NA	NA	NA	NA
M6	chr19	34039172	12A2p6	cell line	sgMsh2	34039172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	116	0	0	NA	exonic	Lipk	nonsynonymous SNV	"Lipk:NM_001205349:exon7:c.A799G:p.S267G,Lipk:NM_172837:exon7:c.A784G:p.S262G"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8213748	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	332	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	34236304	12A2p6	cell line	sgMsh2	34236304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	324	147	17	0.115646259	exonic	Stambpl1	nonsynonymous SNV	"Stambpl1:NM_001360720:exon4:c.T434C:p.V145A,Stambpl1:NM_001360716:exon8:c.T932C:p.V311A,Stambpl1:NM_001360718:exon8:c.T932C:p.V311A,Stambpl1:NM_001360719:exon8:c.T932C:p.V311A,Stambpl1:NM_029682:exon8:c.T932C:p.V311A,Stambpl1:NM_001360717:exon9:c.T932C:p.V311A"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9997922	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	244	6	1	0.166666667	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M6	chr19	34629749	12A2p6	cell line	sgMsh2	34629749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	528	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon1:c.T11C:p.L4P,Ifit1bl2:NM_053217:exon2:c.T11C:p.L4P"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	2	0.9984092	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	34950647	12A2p6	cell line	sgMsh2	34950647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	248	61	8	0.131147541	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon19:c.T3188C:p.L1063P,Kif20b:NM_183046:exon19:c.T3308C:p.L1103P"	19qC1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9658831	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	168	263	12	0.045627376	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6899154	CAG	synonymous	NA	NA	NA	NA
M6	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	229	68	11	0.161764706	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	37004629	12A2p6	cell line	sgMsh2	37004629	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	232	107	3	0.028037383	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon35:c.T5058G:p.H1686Q	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr19	37550485	12A2p6	cell line	sgMsh2	37550485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	45	32	3	0.09375	exonic	Exoc6	synonymous SNV	Exoc6:NM_175353:exon1:c.T21G:p.A7A	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8520067	CTC	synonymous	NA	NA	NA	NA
M6	chr19	37954506	12A2p6	cell line	sgMsh2	37954506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	166	1366	181	0.13250366	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon22:c.A2123G:p.Q708R,Myof:NM_001302140:exon23:c.A2162G:p.Q721R"	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.999633	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	38097293	12A2p6	cell line	sgMsh2	38097293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	145	59	7	0.118644068	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T167C:p.L56P	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.7649826	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	386	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	1.38E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	38305778	12A2p6	cell line	sgMsh2	38305778	A	G	SNV	Mutect2;MuSe	2	0.13	67	0	0	NA	exonic	Lgi1	nonsynonymous SNV	Lgi1:NM_020278:exon8:c.A997G:p.N333D	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.6208902	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr19	38726902	12A2p6	cell line	sgMsh2	38726902	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	160	109	0	0	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon13:c.A3892T:p.T1298S	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	4.57E-08	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	38795525	12A2p6	cell line	sgMsh2	38795525	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	505	127	11	0.086614173	exonic	Noc3l	nonsynonymous SNV	Noc3l:NM_021315:exon16:c.T1738C:p.Y580H	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9808433	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	39031345	12A2p6	cell line	sgMsh2	39031345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	122	6	0	0	exonic	Cyp2c55	synonymous SNV	Cyp2c55:NM_028089:exon5:c.T726C:p.S242S	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.875073	GTT	synonymous	NA	NA	NA	NA
M6	chr19	39087723	12A2p6	cell line	sgMsh2	39087723	A	G	SNV	Mutect2;MuSe;Vardict	3	0.121	376	56	9	0.160714286	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon7:c.A1118G:p.D373G	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	2.37E-08	GAC	nonsynonymous	CGTGA	10	CGTGACGTGA	NA
M6	chr19	39290827	12A2p6	cell line	sgMsh2	39290827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	323	0	0	NA	exonic	Cyp2c29	nonsynonymous SNV	Cyp2c29:NM_007815:exon2:c.T267G:p.D89E	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	4.36E-09	ATC	nonsynonymous	TGAT	8	TGATTGAT	NA
M6	chr19	40001830	12A2p6	cell line	sgMsh2	40001830	A	G	SNV	Mutect2;MuSe;Vardict	3	0.062	267	0	0	NA	exonic	Cyp2c37	nonsynonymous SNV	Cyp2c37:NM_010001:exon7:c.A971G:p.Q324R	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	40046198	12A2p6	cell line	sgMsh2	40046198	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	335	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon7:c.A1027C:p.S343R	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	3.21E-08	CTC	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M6	chr19	40912760	12A2p6	cell line	sgMsh2	40912760	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	199	39	0	0	exonic	Zfp518a	nonsynonymous SNV	Zfp518a:NM_028319:exon5:c.T1132G:p.C378G	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9842179	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	40916015	12A2p6	cell line	sgMsh2	40916015	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	259	58	9	0.155172414	exonic	Zfp518a	stopgain	Zfp518a:NM_028319:exon5:c.G4387T:p.G1463X	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	1.54E-09	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	239	1366	110	0.080527086	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	2.19E-08	GAC	synonymous	NA	NA	NA	NA
M6	chr19	41232352	12A2p6	cell line	sgMsh2	41232352	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	207	1158	1	0.000863558	exonic	Tm9sf3	frameshift deletion	Tm9sf3:NM_133352:exon9:c.1170delT:p.F390Lfs*17	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr19	41256264	12A2p6	cell line	sgMsh2	41256264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	257	1387	205	0.147801009	exonic	Tm9sf3	nonsynonymous SNV	Tm9sf3:NM_133352:exon2:c.A173G:p.Y58C	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	2	0.8969671	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr19	41302604	12A2p6	cell line	sgMsh2	41302604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	81	10	0.12345679	exonic	Pik3ap1	synonymous SNV	Pik3ap1:NM_031376:exon10:c.A1488G:p.K496K	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.9984626	GTT	synonymous	NA	NA	NA	NA
M6	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.094	47	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.504287564	2	0.8166131	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	41981112	12A2p6	cell line	sgMsh2	41981112	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	78	19	1	0.052631579	exonic	Mms19	nonsynonymous SNV	"Mms19:NM_001373946:exon1:c.T2G:p.M1R,Mms19:NM_028152:exon1:c.T2G:p.M1R"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991299	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	42039911	12A2p6	cell line	sgMsh2	42039911	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	173	0	0	NA	exonic	Ankrd2	nonsynonymous SNV	Ankrd2:NM_020033:exon2:c.A149T:p.K50M	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	2	0.9993815	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	84	239	6	0.025104603	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9881065	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	42299222	12A2p6	cell line	sgMsh2	42299222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	114	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon9:c.A1136T:p.H379L,Crtac1:NM_001356589:exon9:c.A1154T:p.H385L,Crtac1:NM_145123:exon9:c.A1154T:p.H385L"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9882028	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	42414026	12A2p6	cell line	sgMsh2	42414026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	123	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon2:c.T124G:p.Y42D,Crtac1:NM_001356589:exon2:c.T142G:p.Y48D,Crtac1:NM_145123:exon2:c.T142G:p.Y48D"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9936406	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	42767263	12A2p6	cell line	sgMsh2	42767263	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	150	66	9	0.136363636	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon6:c.A523G:p.I175V,Hps1:NM_001346703:exon7:c.A523G:p.I175V,Hps1:NM_019424:exon7:c.A523G:p.I175V"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9918507	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr19	43493730	12A2p6	cell line	sgMsh2	43493730	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	139	10	5	0.5	exonic	Cnnm1	nonsynonymous SNV	"Cnnm1:NM_031396:exon10:c.A2695T:p.N899Y,Cnnm1:NM_001373992:exon11:c.A2758T:p.N920Y"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9998496	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr19	43717476	12A2p6	cell line	sgMsh2	43717476	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	115	15	4	0.266666667	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon8:c.T736G:p.S246A	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9994695	CTC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M6	chr19	43901569	12A2p6	cell line	sgMsh2	43901569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	145	31	4	0.129032258	exonic	Dnmbp	synonymous SNV	Dnmbp:NM_028029:exon4:c.T1758C:p.D586D	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999445	TAT	synonymous	NA	NA	NA	NA
M6	chr19	44059158	12A2p6	cell line	sgMsh2	44059158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	157	109	13	0.119266055	exonic	Erlin1	nonsynonymous SNV	"Erlin1:NM_145502:exon5:c.A323G:p.N108S,Erlin1:NM_001164359:exon6:c.A323G:p.N108S,Erlin1:NM_001164360:exon6:c.A323G:p.N108S"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9816911	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	44153684	12A2p6	cell line	sgMsh2	44153684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	204	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon9:c.T1634C:p.V545A	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.9984626	GAC	nonsynonymous	GAA	17	GAAGAAGACGAAGAAGA	NA
M6	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	471	107	5	0.046728972	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	152	238	15	0.06302521	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.02E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	153	246	2	0.008130081	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999907	AAG	synonymous	NA	NA	NA	NA
M6	chr19	45516106	12A2p6	cell line	sgMsh2	45516106	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	274	60	3	0.05	exonic	Btrc	nonsynonymous SNV	"Btrc:NM_001286466:exon9:c.A680C:p.K227T,Btrc:NM_001360127:exon9:c.A1268C:p.K423T,Btrc:NM_009771:exon9:c.A1238C:p.K413T,Btrc:NM_001037758:exon10:c.A1346C:p.K449T,Btrc:NM_001286465:exon10:c.A1346C:p.K449T,Btrc:NM_001360122:exon10:c.A1310C:p.K437T,Btrc:NM_001360126:exon10:c.A1280C:p.K427T,Btrc:NM_001360120:exon11:c.A1388C:p.K463T,Btrc:NM_001360124:exon12:c.A1292C:p.K431T"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	45635833	12A2p6	cell line	sgMsh2	45635833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	65	48	6	0.125	exonic	Fbxw4	nonsynonymous SNV	Fbxw4:NM_013907:exon4:c.A571G:p.T191A	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.8848014	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr19	45749141	12A2p6	cell line	sgMsh2	45749141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	109	26	9	0.346153846	exonic	Npm3	synonymous SNV	Npm3:NM_008723:exon2:c.T120C:p.G40G	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.590123746	2	0.9973029	AAC	synonymous	NA	NA	NA	NA
M6	chr19	45757977	12A2p6	cell line	sgMsh2	45757977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	255	465	51	0.109677419	exonic	Oga	synonymous SNV	Oga:NM_023799:exon14:c.A2382G:p.K794K	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	8.27E-09	TTT	synonymous	NA	NA	NA	NA
M6	chr19	46068033	12A2p6	cell line	sgMsh2	46068033	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	218	116	2	0.017241379	exonic	Pprc1	synonymous SNV	"Pprc1:NM_001081214:exon8:c.C3570A:p.P1190P,Pprc1:NM_001346801:exon8:c.C3576A:p.P1192P"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.00E-09	CCC	synonymous	NA	NA	NA	NA
M6	chr19	46083586	12A2p6	cell line	sgMsh2	46083586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	222	289	48	0.166089965	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon11:c.T1811C:p.V604A,Nolc1:NM_001039352:exon11:c.T1817C:p.V606A,Nolc1:NM_001039353:exon11:c.T1814C:p.V605A,Nolc1:NM_053086:exon11:c.T1814C:p.V605A"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.5961965	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	46271825	12A2p6	cell line	sgMsh2	46271825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	247	103	12	0.116504854	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon26:c.A3331G:p.I1111V	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9999987	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	65	14	1	0.071428571	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9664295	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	46320954	12A2p6	cell line	sgMsh2	46320954	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	128	0	0	NA	exonic	Psd	synonymous SNV	"Psd:NM_001347454:exon7:c.C1566A:p.P522P,Psd:NM_028627:exon7:c.C1563A:p.P521P"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8479299	GGG	synonymous	NA	NA	NA	NA
M6	chr19	46585712	12A2p6	cell line	sgMsh2	46585712	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	185	12	0	0	exonic	Sfxn2	nonsynonymous SNV	Sfxn2:NM_053196:exon4:c.C340T:p.P114S	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999261	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr19	47021911	12A2p6	cell line	sgMsh2	47021911	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	210	0	0	NA	exonic	Ina	nonsynonymous SNV	Ina:NM_146100:exon2:c.T1144G:p.L382V	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9999991	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	47071000	12A2p6	cell line	sgMsh2	47071000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	201	24	1	0.041666667	exonic	Taf5	synonymous SNV	Taf5:NM_177342:exon2:c.A582G:p.E194E	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9995915	AAG	synonymous	NA	NA	NA	NA
M6	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	286	34	4	0.117647059	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	2	0.6363015	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr19	47102587	12A2p6	cell line	sgMsh2	47102587	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	110	73	12	0.164383562	exonic	Pdcd11	synonymous SNV	Pdcd11:NM_011053:exon9:c.C999T:p.C333C	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.9944982	GCG	synonymous	NA	NA	NA	NA
M6	chr19	47129189	12A2p6	cell line	sgMsh2	47129189	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.146	172	87	1	0.011494253	exonic	Pdcd11	frameshift deletion	Pdcd11:NM_011053:exon33:c.4976delA:p.N1660Tfs*8	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr19	47133166	12A2p6	cell line	sgMsh2	47133166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	89	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon3:c.G563A:p.G188E	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9995791	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr19	47135722	12A2p6	cell line	sgMsh2	47135722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	172	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T182C:p.I61T	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9966303	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	47135782	12A2p6	cell line	sgMsh2	47135782	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	167	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T122C:p.V41A	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.25E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr19	47267526	12A2p6	cell line	sgMsh2	47267526	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	155	50	9	0.18	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon14:c.G2752C:p.G918R,Sh3pxd2a:NM_008018:exon15:c.G2836C:p.G946R"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.5706428	CCG	nonsynonymous	C	5	CCCCC	NA
M6	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	138	106	14	0.132075472	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.6132248	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	262	204	21	0.102941176	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9999916	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	47733582	12A2p6	cell line	sgMsh2	47733582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	271	980	136	0.13877551	exonic	Sfr1	nonsynonymous SNV	Sfr1:NM_026377:exon3:c.A436G:p.S146G	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.981409	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	190	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	GTG	synonymous	NA	NA	NA	NA
M6	chr19	50222223	12A2p6	cell line	sgMsh2	50222223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	148	0	0	NA	exonic	Sorcs1	stopgain	"Sorcs1:NM_001252501:exon17:c.G2203T:p.E735X,Sorcs1:NM_001290356:exon17:c.G2203T:p.E735X,Sorcs1:NM_001360457:exon17:c.G2203T:p.E735X,Sorcs1:NM_021377:exon17:c.G2203T:p.E735X"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9947591	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr19	50228253	12A2p6	cell line	sgMsh2	50228253	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	314	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon14:c.A1887T:p.P629P,Sorcs1:NM_001290356:exon14:c.A1887T:p.P629P,Sorcs1:NM_001360457:exon14:c.A1887T:p.P629P,Sorcs1:NM_021377:exon14:c.A1887T:p.P629P"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9998375	GTG	synonymous	NA	NA	NA	NA
M6	chr19	50232658	12A2p6	cell line	sgMsh2	50232658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	340	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon11:c.C1620T:p.I540I,Sorcs1:NM_001290356:exon11:c.C1620T:p.I540I,Sorcs1:NM_001360457:exon11:c.C1620T:p.I540I,Sorcs1:NM_021377:exon11:c.C1620T:p.I540I"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8068151	TGA	synonymous	NA	NA	NA	NA
M6	chr19	50259804	12A2p6	cell line	sgMsh2	50259804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	254	0	0	NA	exonic	Sorcs1	stopgain	"Sorcs1:NM_001252501:exon8:c.C1183T:p.R395X,Sorcs1:NM_001290356:exon8:c.C1183T:p.R395X,Sorcs1:NM_001360457:exon8:c.C1183T:p.R395X,Sorcs1:NM_021377:exon8:c.C1183T:p.R395X"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9999873	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr19	50313026	12A2p6	cell line	sgMsh2	50313026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	129	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon5:c.C899T:p.A300V,Sorcs1:NM_001290356:exon5:c.C899T:p.A300V,Sorcs1:NM_001360457:exon5:c.C899T:p.A300V,Sorcs1:NM_021377:exon5:c.C899T:p.A300V"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.6476045	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	50333459	12A2p6	cell line	sgMsh2	50333459	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	179	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon4:c.G885T:p.K295N,Sorcs1:NM_001290356:exon4:c.G885T:p.K295N,Sorcs1:NM_001360457:exon4:c.G885T:p.K295N,Sorcs1:NM_021377:exon4:c.G885T:p.K295N"	19qD1	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9996753	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr19	53851470	12A2p6	cell line	sgMsh2	53851470	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	171	1	0	0	exonic	Rbm20	synonymous SNV	Rbm20:NM_001170847:exon11:c.G2889A:p.P963P	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.09309682	CGT	synonymous	NA	NA	NA	NA
M6	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	170	43	3	0.069767442	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9999972	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr19	55278125	12A2p6	cell line	sgMsh2	55278125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	251	861	127	0.147502904	exonic	Acsl5	synonymous SNV	Acsl5:NM_027976:exon5:c.A375G:p.K125K	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.9999994	AAG	synonymous	NA	NA	NA	NA
M6	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	180	897	22	0.024526198	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr19	56791006	12A2p6	cell line	sgMsh2	56791006	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	226	80	17	0.2125	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon16:c.T2711A:p.I904N	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	57685672	12A2p6	cell line	sgMsh2	57685672	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.122	123	97	16	0.164948454	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon12:c.T1938A:p.N646K	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9860996	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	229	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	58962878	12A2p6	cell line	sgMsh2	58962878	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	124	0	0	NA	exonic	Eno4	nonsynonymous SNV	Eno4:NM_178689:exon10:c.A1318T:p.I440F	19qD2	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.9956342	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr19	59235176	12A2p6	cell line	sgMsh2	59235176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	204	0	0	NA	exonic	Kcnk18	nonsynonymous SNV	Kcnk18:NM_207261:exon3:c.A752G:p.K251R	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9998164	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr19	59344995	12A2p6	cell line	sgMsh2	59344995	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	103	83	9	0.108433735	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon1:c.A593G:p.N198S	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.7883117	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	252	26	1	0.038461538	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	GAT	synonymous	NA	NA	NA	NA
M6	chr19	60220490	12A2p6	cell line	sgMsh2	60220490	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.142	103	48	0	0	exonic	Fam204a	frameshift insertion	"Fam204a:NM_001358273:exon3:c.330dupA:p.G111Rfs*5,Fam204a:NM_029648:exon3:c.330dupA:p.G111Rfs*5"	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	NA	NA	CCT	frameshift	T	5	TTTTT	1
M6	chr19	60766902	12A2p6	cell line	sgMsh2	60766903	CT	-	Deletion	Strelka2;Vardict	2	0.1154	156	790	8	0.010126582	exonic	Eif3a	frameshift deletion	Eif3a:NM_010123:exon19:c.2840_2841del:p.E947Vfs*3	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.619093457	NA	NA	ACT	frameshift	CT	10	CTCTCTCTCT	-2
M6	chr19	60779455	12A2p6	cell line	sgMsh2	60779455	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	198	645	78	0.120930233	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon5:c.G644A:p.S215N	19qD3	chr19-7683516-61227351	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.909165	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	3186515	12A2p6	cell line	sgMsh2	3186515	G	T	SNV	Mutect2;Vardict	2	0.056	78	27	1	0.037037037	exonic	Fam171a1	nonsynonymous SNV	"Fam171a1:NM_001081161:exon3:c.G418T:p.G140C,Fam171a1:NM_001310434:exon3:c.G43T:p.G15C,Fam171a1:NM_001347067:exon3:c.G403T:p.G135C,Fam171a1:NM_001361386:exon3:c.G418T:p.G140C"	2qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	3329041	12A2p6	cell line	sgMsh2	3329041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	211	30	8	0.266666667	exonic	Rpp38	stopgain	Rpp38:NM_001013376:exon2:c.A823T:p.K275X	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTA	nonsynonymous	T	5	TTTTT	NA
M6	chr2	4995798	12A2p6	cell line	sgMsh2	4995798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	140	23	0	0	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.T2081C:p.V694A,Mcm10:NM_027290:exon15:c.T2081C:p.V694A"	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	4995802	12A2p6	cell line	sgMsh2	4995802	T	C	SNV	Mutect2;Vardict	2	0.031	146	22	0	0	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.A2077G:p.T693A,Mcm10:NM_027290:exon15:c.A2077G:p.T693A"	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.04E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	5902496	12A2p6	cell line	sgMsh2	5902496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	94	7	1	0.142857143	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon15:c.T2408A:p.V803D	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	5973518	12A2p6	cell line	sgMsh2	5973518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	81	37	5	0.135135135	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon4:c.T1192C:p.Y398H	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.622312314	2	0.9541284	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	10126177	12A2p6	cell line	sgMsh2	10126177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	121	30	0.247933884	exonic	Itih2	nonsynonymous SNV	Itih2:NM_010582:exon4:c.A348C:p.K116N	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	11226873	12A2p6	cell line	sgMsh2	11226873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	127	0	0	NA	exonic	Prkcq	synonymous SNV	Prkcq:NM_008859:exon2:c.A6G:p.S2S	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999658	CAC	synonymous	NA	NA	NA	NA
M6	chr2	11586945	12A2p6	cell line	sgMsh2	11586945	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	269	277	7	0.025270758	exonic	Rbm17	nonsynonymous SNV	Rbm17:NM_152824:exon10:c.G963T:p.E321D	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	239	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	13444324	12A2p6	cell line	sgMsh2	13444324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	134	31	7	0.225806452	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon21:c.A2939G:p.E980G	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	13456616	12A2p6	cell line	sgMsh2	13456616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	187	30	1	0.033333333	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon16:c.T2099C:p.L700P	2qA1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	14238248	12A2p6	cell line	sgMsh2	14238248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	111	0	0	NA	exonic	Mrc1	nonsynonymous SNV	Mrc1:NM_008625:exon2:c.T184G:p.S62A	2qA2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9998056	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	16357184	12A2p6	cell line	sgMsh2	16357184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	109	0	0	NA	exonic	Plxdc2	nonsynonymous SNV	Plxdc2:NM_026162:exon1:c.T59C:p.F20S	2qA2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998877	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Vardict	2	0.054	79	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9991906	AAG	synonymous	NA	NA	NA	NA
M6	chr2	19269134	12A2p6	cell line	sgMsh2	19269134	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	121	0	0	NA	exonic	Armc3	synonymous SNV	"Armc3:NM_001081083:exon9:c.A978G:p.G326G,Armc3:NM_001271563:exon9:c.A978G:p.G326G,Armc3:NM_001271564:exon9:c.A978G:p.G326G,Armc3:NM_001271565:exon9:c.A978G:p.G326G"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9976657	GAT	synonymous	NA	NA	NA	NA
M6	chr2	20859758	12A2p6	cell line	sgMsh2	20859758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	195	86	16	0.186046512	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon17:c.A3654C:p.K1218N,Arhgap21:NM_001128084:exon18:c.A3684C:p.K1228N"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	21194492	12A2p6	cell line	sgMsh2	21194492	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	82	2	0	0	exonic	Enkur	frameshift deletion	Enkur:NM_027728:exon3:c.230delA:p.K77Sfs*13	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	149	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.22E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	22291860	12A2p6	cell line	sgMsh2	22291860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	141	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon7:c.T664A:p.W222R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	22399798	12A2p6	cell line	sgMsh2	22399798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon18:c.A1964G:p.Q655R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9944928	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	22826908	12A2p6	cell line	sgMsh2	22826908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	129	0	0	NA	exonic	Apbb1ip	nonsynonymous SNV	Apbb1ip:NM_019456:exon5:c.A521G:p.K174R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	AAG	nonsynonymous	GAAG	8	GAAGGAAG	NA
M6	chr2	22895674	12A2p6	cell line	sgMsh2	22895674	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	32	7	3	0.428571429	exonic	Pdss1	nonsynonymous SNV	"Pdss1:NM_001355467:exon1:c.G44T:p.R15M,Pdss1:NM_019501:exon1:c.G44T:p.R15M"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.982137	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	23099671	12A2p6	cell line	sgMsh2	23099671	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	46	94	20	0.212765957	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon9:c.T942A:p.N314K,Acbd5:NM_001102436:exon10:c.T1161A:p.N387K,Acbd5:NM_001102437:exon10:c.T1272A:p.N424K,Acbd5:NM_001102438:exon10:c.T1269A:p.N423K,Acbd5:NM_001355641:exon10:c.T975A:p.N325K,Acbd5:NM_028793:exon10:c.T1164A:p.N388K,Acbd5:NM_001355637:exon11:c.T1305A:p.N435K,Acbd5:NM_001355638:exon11:c.T1302A:p.N434K,Acbd5:NM_001355639:exon11:c.T1194A:p.N398K"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	1	0.6973832	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	23110710	12A2p6	cell line	sgMsh2	23110710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	196	171	36	0.210526316	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon11:c.A1134G:p.I378M,Acbd5:NM_001102436:exon12:c.A1353G:p.I451M,Acbd5:NM_001102437:exon12:c.A1464G:p.I488M,Acbd5:NM_001102438:exon12:c.A1461G:p.I487M,Acbd5:NM_001355641:exon12:c.A1167G:p.I389M,Acbd5:NM_028793:exon12:c.A1356G:p.I452M,Acbd5:NM_001355637:exon13:c.A1497G:p.I499M,Acbd5:NM_001355638:exon13:c.A1494G:p.I498M,Acbd5:NM_001355639:exon13:c.A1386G:p.I462M"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999983	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	23136890	12A2p6	cell line	sgMsh2	23136890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	106	42	6	0.142857143	exonic	Mastl	nonsynonymous SNV	Mastl:NM_025979:exon7:c.A959G:p.K320R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	23181050	12A2p6	cell line	sgMsh2	23181050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	253	425	75	0.176470588	exonic	Yme1l1	nonsynonymous SNV	Yme1l1:NM_013771:exon8:c.T797G:p.L266R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.30E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	23537589	12A2p6	cell line	sgMsh2	23537589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	95	36	4	0.111111111	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon6:c.A305G:p.N102S,Spopl:NM_029773:exon6:c.A530G:p.N177S,Spopl:NM_001165997:exon7:c.A305G:p.N102S"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	24155269	12A2p6	cell line	sgMsh2	24155269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	186	0	0	NA	exonic	Il1f8	synonymous SNV	Il1f8:NM_027163:exon3:c.A132G:p.Q44Q	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	AAC	synonymous	NA	NA	NA	NA
M6	chr2	24395019	12A2p6	cell line	sgMsh2	24395019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	60	18	2	0.111111111	exonic	Psd4	synonymous SNV	"Psd4:NM_001355232:exon2:c.A894G:p.V298V,Psd4:NM_177611:exon2:c.A894G:p.V298V,Psd4:NM_001355231:exon3:c.A894G:p.V298V"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9866002	TAC	synonymous	NA	NA	NA	NA
M6	chr2	25021954	12A2p6	cell line	sgMsh2	25021954	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	171	7	0	0	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon20:c.C2131T:p.L711L	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9882763	ACT	synonymous	NA	NA	NA	NA
M6	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	80	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9992375	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	25249426	12A2p6	cell line	sgMsh2	25249426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	99	31	13	0.419354839	exonic	Ndor1	nonsynonymous SNV	"Ndor1:NM_001252541:exon5:c.A622G:p.T208A,Ndor1:NM_001082476:exon7:c.A823G:p.T275A,Ndor1:NM_001252542:exon7:c.A616G:p.T206A"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	GTG	nonsynonymous	A	5	AAAAA	NA
M6	chr2	25263058	12A2p6	cell line	sgMsh2	25263058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	42	25	2	0.08	exonic	Tprn	nonsynonymous SNV	Tprn:NM_175286:exon1:c.T371C:p.V124A	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9906932	GTA	nonsynonymous	GTA	8	GTAGTAGT	NA
M6	chr2	25354574	12A2p6	cell line	sgMsh2	25354574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	50	19	0.38	exonic	Dpp7	nonsynonymous SNV	Dpp7:NM_031843:exon7:c.T794C:p.L265P	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	25355694	12A2p6	cell line	sgMsh2	25355694	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	86	19	5	0.263157895	exonic	Dpp7	nonsynonymous SNV	Dpp7:NM_031843:exon4:c.G379T:p.G127C	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994869	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	25425186	12A2p6	cell line	sgMsh2	25425186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	97	0	0	NA	exonic	Fut7	nonsynonymous SNV	"Fut7:NM_001177366:exon2:c.T455C:p.L152P,Fut7:NM_001177367:exon3:c.T314C:p.L105P,Fut7:NM_001289455:exon3:c.T314C:p.L105P,Fut7:NM_013524:exon3:c.T314C:p.L105P,Fut7:NM_001289453:exon4:c.T314C:p.L105P,Fut7:NM_001289454:exon4:c.T314C:p.L105P,Fut7:NM_001289456:exon4:c.T314C:p.L105P"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9963447	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	113	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999836	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	25898394	12A2p6	cell line	sgMsh2	25898394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	95	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon11:c.A1060G:p.M354V,Kcnt1:NM_001145403:exon12:c.A1042G:p.M348V,Kcnt1:NM_175462:exon12:c.A1102G:p.M368V"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	25898829	12A2p6	cell line	sgMsh2	25898829	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	69	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon12:c.G1232T:p.R411L,Kcnt1:NM_001145403:exon13:c.G1214T:p.R405L,Kcnt1:NM_175462:exon13:c.G1274T:p.R425L"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr2	26364684	12A2p6	cell line	sgMsh2	26364684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	129	20	4	0.2	exonic	Snapc4	nonsynonymous SNV	"Snapc4:NM_172339:exon21:c.C3803T:p.A1268V,Snapc4:NM_001290419:exon22:c.C3533T:p.A1178V"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9998948	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	26376996	12A2p6	cell line	sgMsh2	26376996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	77	28	5	0.178571429	exonic	Snapc4	nonsynonymous SNV	Snapc4:NM_172339:exon4:c.A218C:p.D73A	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990705	GTC	nonsynonymous	TCC	8	TCCTCCTC	NA
M6	chr2	27018384	12A2p6	cell line	sgMsh2	27018384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	111	53	8	0.150943396	exonic	Cacfd1	nonsynonymous SNV	Cacfd1:NM_029862:exon4:c.T329C:p.V110A	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	27071924	12A2p6	cell line	sgMsh2	27071924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	62	0	0	NA	exonic	Mymk	nonsynonymous SNV	Mymk:NM_025376:exon1:c.A92G:p.Y31C	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	27929453	12A2p6	cell line	sgMsh2	27929453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	95	8	2	0.25	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon4:c.A566C:p.K189T	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9966737	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	27986752	12A2p6	cell line	sgMsh2	27986752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	215	6	1	0.166666667	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon29:c.A2462G:p.D821G	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	28450656	12A2p6	cell line	sgMsh2	28450656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	90	2	1	0.5	exonic	Ppp1r26	synonymous SNV	"Ppp1r26:NM_001005420:exon4:c.T297C:p.R99R,Ppp1r26:NM_001368159:exon4:c.T297C:p.R99R"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9762767	GTG	synonymous	NA	NA	NA	NA
M6	chr2	28450778	12A2p6	cell line	sgMsh2	28450778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	97	7	2	0.285714286	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.A419G:p.Y140C,Ppp1r26:NM_001368159:exon4:c.A419G:p.Y140C"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9702677	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	220	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	28962632	12A2p6	cell line	sgMsh2	28962632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	113	1	0	0	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon4:c.G627T:p.K209N	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	29065312	12A2p6	cell line	sgMsh2	29065312	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	121	29	3	0.103448276	exonic	Ttf1	nonsynonymous SNV	Ttf1:NM_009442:exon2:c.A687C:p.K229N	2qA3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999142	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	29126985	12A2p6	cell line	sgMsh2	29126985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	149	47	5	0.106382979	exonic	Setx	synonymous SNV	Setx:NM_198033:exon3:c.T99C:p.A33A	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	CTG	synonymous	NA	NA	NA	NA
M6	chr2	29763417	12A2p6	cell line	sgMsh2	29763417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	228	0	0	NA	exonic	Gm13547	nonsynonymous SNV	Gm13547:NM_001177392:exon2:c.C266A:p.P89H	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.43E-08	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	29869617	12A2p6	cell line	sgMsh2	29869617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	26	0	0	NA	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon1:c.T80C:p.L27P	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.9736728	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	29996132	12A2p6	cell line	sgMsh2	29996132	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	65	131	29	0.221374046	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177667:exon17:c.C2305T:p.L769F,Sptan1:NM_001177668:exon17:c.C2305T:p.L769F,Sptan1:NM_001309460:exon17:c.C2305T:p.L769F,Sptan1:NM_001369325:exon17:c.C2305T:p.L769F"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	30087189	12A2p6	cell line	sgMsh2	30087189	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	62	32	9	0.28125	exonic	Pkn3	nonsynonymous SNV	Pkn3:NM_153805:exon16:c.A1940T:p.E647V	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	76	73	33	0.452054795	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.9990071	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	30342753	12A2p6	cell line	sgMsh2	30342753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	178	49	15	0.306122449	exonic	Nup188	nonsynonymous SNV	Nup188:NM_198304:exon40:c.A4730G:p.H1577R	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999952	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	31010194	12A2p6	cell line	sgMsh2	31010194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	61	19	6	0.315789474	exonic	Usp20	nonsynonymous SNV	Usp20:NM_028846:exon11:c.T719C:p.M240T	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9973297	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	31392146	12A2p6	cell line	sgMsh2	31392146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	130	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon37:c.A5679G:p.E1893E	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	AAC	synonymous	NA	NA	NA	NA
M6	chr2	31976596	12A2p6	cell line	sgMsh2	31976596	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	32	3	0.09375	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon2:c.T142A:p.Y48N	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	GTA	nonsynonymous	GTATG	10	GTATGGTATG	NA
M6	chr2	31977810	12A2p6	cell line	sgMsh2	31977810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	229	50	15	0.3	exonic	Nup214	synonymous SNV	Nup214:NM_172268:exon3:c.T288C:p.H96H	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.15E-08	ATC	synonymous	NA	NA	NA	NA
M6	chr2	32033233	12A2p6	cell line	sgMsh2	32033233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	52	35	9	0.257142857	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon29:c.A3773G:p.Q1258R	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9951712	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	231	610	22	0.036065574	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.999961	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	32673367	12A2p6	cell line	sgMsh2	32673367	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	0	0	NA	exonic	Eng	nonsynonymous SNV	"Eng:NM_001146348:exon7:c.A931G:p.T311A,Eng:NM_001146350:exon7:c.A934G:p.T312A,Eng:NM_007932:exon7:c.A934G:p.T312A"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.995558	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	32709892	12A2p6	cell line	sgMsh2	32709892	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	77	154	33	0.214285714	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.T485A:p.V162D	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990705	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	33104854	12A2p6	cell line	sgMsh2	33104854	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	15	2	0.133333333	exonic	Garnl3	nonsynonymous SNV	"Garnl3:NM_001355200:exon2:c.C262A:p.L88I,Garnl3:NM_001355201:exon2:c.C142A:p.L48I"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	199	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	35006105	12A2p6	cell line	sgMsh2	35006105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	113	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon28:c.T3665C:p.V1222A	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	35088812	12A2p6	cell line	sgMsh2	35088812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	153	1	0	0	exonic	AI182371	nonsynonymous SNV	"AI182371:NM_001243102:exon5:c.T539C:p.V180A,AI182371:NM_001243103:exon5:c.T536C:p.V179A,AI182371:NM_001379434:exon5:c.T539C:p.V180A,AI182371:NM_178885:exon5:c.T536C:p.V179A"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.999991	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	94	216	0	0	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	2	0.9746942	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	35385643	12A2p6	cell line	sgMsh2	35385643	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	118	0	0	NA	exonic	4930402F06Rik	nonsynonymous SNV	"4930402F06Rik:NM_001272040:exon3:c.A44T:p.Q15L,4930402F06Rik:NM_001080709:exon4:c.A137T:p.Q46L"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	35422190	12A2p6	cell line	sgMsh2	35422190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	157	124	21	0.169354839	exonic	Ggta1	nonsynonymous SNV	"Ggta1:NM_001145821:exon4:c.T175C:p.Y59H,Ggta1:NM_001308299:exon4:c.T175C:p.Y59H,Ggta1:NM_001308300:exon4:c.T175C:p.Y59H,Ggta1:NM_010283:exon4:c.T175C:p.Y59H"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	36117859	12A2p6	cell line	sgMsh2	36117859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	110	72	17	0.236111111	exonic	Rbm18	nonsynonymous SNV	"Rbm18:NM_001355580:exon5:c.A322G:p.R108G,Rbm18:NM_001159635:exon6:c.A439G:p.R147G,Rbm18:NM_026434:exon6:c.A529G:p.R177G"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	CTT	nonsynonymous	T	5	TTTTT	NA
M6	chr2	36422142	12A2p6	cell line	sgMsh2	36422142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	447	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.T743C:p.V248A	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	36422162	12A2p6	cell line	sgMsh2	36422162	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	417	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.A763T:p.I255F	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	36640915	12A2p6	cell line	sgMsh2	36640915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	371	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T875C:p.L292P	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	36813090	12A2p6	cell line	sgMsh2	36813090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	117	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.A1G:p.M1V	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999338	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	36890485	12A2p6	cell line	sgMsh2	36890485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	369	0	0	NA	exonic	Olfr353	nonsynonymous SNV	Olfr353:NM_146941:exon1:c.A362G:p.Y121C	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	36927639	12A2p6	cell line	sgMsh2	36927639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	192	0	0	NA	exonic	Olfr355	synonymous SNV	Olfr355:NM_146625:exon1:c.T474C:p.L158L	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	AAA	synonymous	NA	NA	NA	NA
M6	chr2	37005072	12A2p6	cell line	sgMsh2	37005072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	312	0	0	NA	exonic	Olfr358	nonsynonymous SNV	Olfr358:NM_207235:exon1:c.A541G:p.T181A	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.17E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	37085712	12A2p6	cell line	sgMsh2	37085712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	179	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T35C:p.F12S	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999989	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	155	62	2	0.032258065	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9991264	AAC	nonsynonymous	A	5	AAAAA	NA
M6	chr2	37790466	12A2p6	cell line	sgMsh2	37790466	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	112	0	0	NA	exonic	Crb2	nonsynonymous SNV	Crb2:NM_001163566:exon7:c.T1405C:p.F469L	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999079	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	37793478	12A2p6	cell line	sgMsh2	37793478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	46	0	0	NA	exonic	Crb2	synonymous SNV	Crb2:NM_001163566:exon10:c.T2991C:p.G997G	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	GTG	synonymous	NA	NA	NA	NA
M6	chr2	37800703	12A2p6	cell line	sgMsh2	37800703	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	102	4	1	0.25	exonic	Dennd1a	nonsynonymous SNV	"Dennd1a:NM_001362978:exon20:c.A2168T:p.N723I,Dennd1a:NM_001362977:exon21:c.A2288T:p.N763I,Dennd1a:NM_146122:exon22:c.A2384T:p.N795I,Dennd1a:NM_001362973:exon23:c.A2513T:p.N838I"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	40601553	12A2p6	cell line	sgMsh2	40601553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	169	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon88:c.T13367C:p.L4456S	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	40677558	12A2p6	cell line	sgMsh2	40677558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	145	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon79:c.A12156C:p.I4052I	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9828413	CTA	synonymous	NA	NA	NA	NA
M6	chr2	41123683	12A2p6	cell line	sgMsh2	41123683	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	166	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon36:c.G5809A:p.A1937T	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999974	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	43629042	12A2p6	cell line	sgMsh2	43629042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	114	0	0	NA	exonic	Kynu	synonymous SNV	"Kynu:NM_001289593:exon9:c.T822C:p.C274C,Kynu:NM_001289594:exon9:c.T822C:p.C274C,Kynu:NM_027552:exon9:c.T822C:p.C274C"	2qB	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	GTT	synonymous	NA	NA	NA	NA
M6	chr2	48814780	12A2p6	cell line	sgMsh2	48814780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	50	42	5	0.119047619	exonic	Acvr2a	synonymous SNV	Acvr2a:NM_007396:exon1:c.T9C:p.A3A	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9944928	CTG	synonymous	GCT	8	GCTGCTGC	NA
M6	chr2	48917308	12A2p6	cell line	sgMsh2	48917308	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	97	134	3	0.02238806	exonic	Orc4	stopgain	"Orc4:NM_001355296:exon9:c.A610T:p.K204X,Orc4:NM_011958:exon9:c.A610T:p.K204X"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	49256209	12A2p6	cell line	sgMsh2	49256209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	86	25	5	0.2	exonic	Mbd5	nonsynonymous SNV	"Mbd5:NM_001290656:exon4:c.A430G:p.T144A,Mbd5:NM_029924:exon11:c.A430G:p.T144A"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	52105483	12A2p6	cell line	sgMsh2	52105483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	158	79	2	0.025316456	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon24:c.C2713T:p.L905F,Rif1:NM_001355415:exon24:c.C2692T:p.L898F,Rif1:NM_175238:exon24:c.C2713T:p.L905F"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	52116276	12A2p6	cell line	sgMsh2	52116276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	171	55	12	0.218181818	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon31:c.T6494C:p.I2165T,Rif1:NM_001355415:exon31:c.T6473C:p.I2158T,Rif1:NM_175238:exon31:c.T6494C:p.I2165T"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	52137428	12A2p6	cell line	sgMsh2	52137428	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	62	0	0	NA	exonic	Neb	frameshift deletion	Neb:NM_010889:exon157:c.21289delA:p.I7097Sfs*7	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6	chr2	52170445	12A2p6	cell line	sgMsh2	52170445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	220	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon134:c.A18924G:p.A6308A	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
M6	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	266	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	53191128	12A2p6	cell line	sgMsh2	53191128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	54	58	9	0.155172414	exonic	Prpf40a	synonymous SNV	"Prpf40a:NM_001371015:exon1:c.A105G:p.Q35Q,Prpf40a:NM_001371016:exon1:c.A105G:p.Q35Q,Prpf40a:NM_018785:exon1:c.A105G:p.Q35Q"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	GTT	synonymous	GAGG	8	GAGGGAGG	NA
M6	chr2	55073920	12A2p6	cell line	sgMsh2	55073920	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	184	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon11:c.A1319G:p.Q440R	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	CAA	nonsynonymous	CAAT	8	CAATCAAT	NA
M6	chr2	55098684	12A2p6	cell line	sgMsh2	55098684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	116	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon12:c.A1517G:p.E506G	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999293	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	55437642	12A2p6	cell line	sgMsh2	55437642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	92	0	0	NA	exonic	Kcnj3	nonsynonymous SNV	"Kcnj3:NM_001304810:exon2:c.T442C:p.Y148H,Kcnj3:NM_008426:exon2:c.T442C:p.Y148H,Kcnj3:NM_001355118:exon3:c.T442C:p.Y148H"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	58823588	12A2p6	cell line	sgMsh2	58823588	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	199	3	1	0.333333333	exonic	Ccdc148	nonsynonymous SNV	"Ccdc148:NM_001362393:exon14:c.G1634T:p.R545M,Ccdc148:NM_001362394:exon14:c.G1415T:p.R472M,Ccdc148:NM_001001178:exon15:c.G1550T:p.R517M,Ccdc148:NM_001372501:exon15:c.G1766T:p.R589M"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CCT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M6	chr2	59308409	12A2p6	cell line	sgMsh2	59308409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	139	145	23	0.15862069	exonic	Pkp4	synonymous SNV	"Pkp4:NM_001362992:exon6:c.A558G:p.S186S,Pkp4:NM_001362990:exon7:c.A996G:p.S332S,Pkp4:NM_001362991:exon7:c.A996G:p.S332S,Pkp4:NM_026361:exon7:c.A1002G:p.S334S,Pkp4:NM_175464:exon7:c.A1002G:p.S334S,Pkp4:NM_001362993:exon8:c.A558G:p.S186S,Pkp4:NM_001362994:exon8:c.A558G:p.S186S,Pkp4:NM_001362995:exon8:c.A558G:p.S186S,Pkp4:NM_001362996:exon8:c.A558G:p.S186S"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999845	CAT	synonymous	NA	NA	NA	NA
M6	chr2	59790783	12A2p6	cell line	sgMsh2	59790783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	183	75	9	0.12	exonic	Tanc1	synonymous SNV	"Tanc1:NM_001290659:exon8:c.T945C:p.S315S,Tanc1:NM_198294:exon9:c.T945C:p.S315S"	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9998638	GTT	synonymous	NA	NA	NA	NA
M6	chr2	60303594	12A2p6	cell line	sgMsh2	60303594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	135	10	2	0.2	exonic	Ly75	synonymous SNV	Ly75:NM_013825:exon32:c.A4686G:p.Q1562Q	2qC1.1	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	CTT	synonymous	NA	NA	NA	NA
M6	chr2	61764871	12A2p6	cell line	sgMsh2	61764871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	190	270	55	0.203703704	exonic	Psmd14	nonsynonymous SNV	Psmd14:NM_021526:exon7:c.T334C:p.Y112H	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	GTA	nonsynonymous	GTTG	15	TGGTTGTTGGTTGGT	NA
M6	chr2	62211477	12A2p6	cell line	sgMsh2	62211477	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	107	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242378:exon4:c.T400A:p.W134R,Slc4a10:NM_001242379:exon4:c.T400A:p.W134R,Slc4a10:NM_001242380:exon4:c.T400A:p.W134R,Slc4a10:NM_001242381:exon4:c.T400A:p.W134R,Slc4a10:NM_001242382:exon4:c.T400A:p.W134R,Slc4a10:NM_001242383:exon4:c.T400A:p.W134R,Slc4a10:NM_001362671:exon4:c.T397A:p.W133R,Slc4a10:NM_001362672:exon4:c.T397A:p.W133R,Slc4a10:NM_001362673:exon4:c.T397A:p.W133R,Slc4a10:NM_001362674:exon4:c.T397A:p.W133R,Slc4a10:NM_001362675:exon4:c.T397A:p.W133R,Slc4a10:NM_001362676:exon4:c.T397A:p.W133R,Slc4a10:NM_033552:exon4:c.T400A:p.W134R"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	62478687	12A2p6	cell line	sgMsh2	62478687	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	153	0	0	NA	exonic	Gcg	nonsynonymous SNV	Gcg:NM_008100:exon3:c.A122G:p.H41R	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999939	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	62611711	12A2p6	cell line	sgMsh2	62611711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	132	8	1	0.125	exonic	Ifih1	synonymous SNV	"Ifih1:NM_001164477:exon5:c.A1161G:p.S387S,Ifih1:NM_027835:exon6:c.A1308G:p.S436S"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.7119083	CTG	synonymous	CCAA	10	CCAACCAACC	NA
M6	chr2	62635163	12A2p6	cell line	sgMsh2	62635163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	101	6	0	0	exonic	Ifih1	nonsynonymous SNV	Ifih1:NM_027835:exon3:c.A662G:p.N221S	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9978179	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	63978844	12A2p6	cell line	sgMsh2	63978844	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	197	3	0	0	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.C2081T:p.A694V,Fign:NM_001267846:exon4:c.C2048T:p.A683V,Fign:NM_001267847:exon4:c.C2048T:p.A683V"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	63979031	12A2p6	cell line	sgMsh2	63979031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	169	6	0	0	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A1894G:p.K632E,Fign:NM_001267846:exon4:c.A1861G:p.K621E,Fign:NM_001267847:exon4:c.A1861G:p.K621E"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Vardict	2	0.047	131	6	3	0.5	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M6	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	166	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999401	GTT	synonymous	NA	NA	NA	NA
M6	chr2	65497488	12A2p6	cell line	sgMsh2	65497488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	366	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon16:c.T2804C:p.I935T,Scn3a:NM_001355167:exon16:c.T2753C:p.I918T,Scn3a:NM_001355168:exon16:c.T2666C:p.I889T,Scn3a:NM_001355169:exon16:c.T2666C:p.I889T,Scn3a:NM_001355170:exon16:c.T2657C:p.I886T,Scn3a:NM_001355171:exon16:c.T899C:p.I300T,Scn3a:NM_018732:exon16:c.T2657C:p.I886T"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	65717806	12A2p6	cell line	sgMsh2	65717806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	188	5	2	0.4	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346679:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346680:exon17:c.A3341G:p.D1114G"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	65763800	12A2p6	cell line	sgMsh2	65763800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	371	0	0	NA	exonic	Scn2a	synonymous SNV	"Scn2a:NM_001099298:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346679:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346680:exon27:c.C4992T:p.I1664I"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	TCG	synonymous	NA	NA	NA	NA
M6	chr2	65763849	12A2p6	cell line	sgMsh2	65763849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	364	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346679:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346680:exon27:c.T5041C:p.S1681P"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	66107064	12A2p6	cell line	sgMsh2	66107064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	130	132	34	0.257575758	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon2:c.T301C:p.Y101H	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999719	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	66536237	12A2p6	cell line	sgMsh2	66536237	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	171	2	0	0	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon14:c.2201delA:p.K734Sfs*6,Scn9a:NM_001290675:exon14:c.2168delA:p.K723Sfs*6"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr2	66565105	12A2p6	cell line	sgMsh2	66565105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	66	6	0	0	exonic	Scn9a	synonymous SNV	"Scn9a:NM_001290674:exon5:c.T594C:p.F198F,Scn9a:NM_001290675:exon5:c.T594C:p.F198F"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	CAA	synonymous	A	5	AAAAA	NA
M6	chr2	66676137	12A2p6	cell line	sgMsh2	66676137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	123	0	0	NA	exonic	Scn7a	synonymous SNV	Scn7a:NM_009135:exon25:c.T4407C:p.P1469P	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	AAG	synonymous	NA	NA	NA	NA
M6	chr2	67513258	12A2p6	cell line	sgMsh2	67513258	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	80	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.5842delA:p.N1949Mfs*19,Xirp2:NM_001083919:exon7:c.5842delA:p.N1949Mfs*19"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr2	67514993	12A2p6	cell line	sgMsh2	67514993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	156	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7577G:p.K2526R,Xirp2:NM_001083919:exon7:c.A7577G:p.K2526R"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	67516356	12A2p6	cell line	sgMsh2	67516356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	91	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A8940G:p.I2980M,Xirp2:NM_001083919:exon7:c.A8940G:p.I2980M"	2qC1.3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	69152395	12A2p6	cell line	sgMsh2	69152395	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	95	40	7	0.175	exonic	Nostrin	nonsynonymous SNV	Nostrin:NM_181547:exon3:c.A174C:p.K58N	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.7609741	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	69156162	12A2p6	cell line	sgMsh2	69156162	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	108	34	5	0.147058824	exonic	Nostrin	nonsynonymous SNV	Nostrin:NM_181547:exon4:c.G247A:p.A83T	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9990267	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	69202618	12A2p6	cell line	sgMsh2	69202618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	156	61	10	0.163934426	exonic	Spc25	synonymous SNV	"Spc25:NM_025565:exon3:c.T162A:p.T54T,Spc25:NM_001199123:exon4:c.T306A:p.T102T,Spc25:NM_001199124:exon4:c.T306A:p.T102T,Spc25:NM_001305800:exon4:c.T306A:p.T102T"	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9998757	CAG	synonymous	NA	NA	NA	NA
M6	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	261	1	0	0	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	TAT	synonymous	NA	NA	NA	NA
M6	chr2	69483852	12A2p6	cell line	sgMsh2	69483852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	61	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6534C:p.N2178N	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9956743	TAT	synonymous	NA	NA	NA	NA
M6	chr2	70476910	12A2p6	cell line	sgMsh2	70476910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	67	1	0	0	exonic	Sp5	nonsynonymous SNV	Sp5:NM_022435:exon2:c.T938C:p.L313P	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.7459042	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	71421695	12A2p6	cell line	sgMsh2	71421695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	71	143	21	0.146853147	exonic	Hat1	nonsynonymous SNV	Hat1:NM_026115:exon8:c.T770C:p.V257A	2qC2	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	73356701	12A2p6	cell line	sgMsh2	73356701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	99	2	0	0	exonic	Gpr155	synonymous SNV	"Gpr155:NM_001276444:exon11:c.T1683C:p.S561S,Gpr155:NM_001190297:exon12:c.T1767C:p.S589S,Gpr155:NM_001276443:exon12:c.T1767C:p.S589S"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997826	AAC	synonymous	NA	NA	NA	NA
M6	chr2	73568222	12A2p6	cell line	sgMsh2	73568222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	135	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon7:c.T872C:p.V291A	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	74657986	12A2p6	cell line	sgMsh2	74657986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	41	0	0	NA	exonic	Evx2	synonymous SNV	Evx2:NM_007967:exon2:c.T489C:p.G163G	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.009936071	TAC	synonymous	NA	NA	NA	NA
M6	chr2	74876455	12A2p6	cell line	sgMsh2	74876455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	136	180	32	0.177777778	exonic	Mtx2	nonsynonymous SNV	Mtx2:NM_016804:exon10:c.G773A:p.G258D	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9751323	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	75891847	12A2p6	cell line	sgMsh2	75891847	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	107	86	2	0.023255814	exonic	Agps	frameshift deletion	Agps:NM_172666:exon13:c.1380delA:p.K462Sfs*14	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr2	76375434	12A2p6	cell line	sgMsh2	76375434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	120	70	9	0.128571429	exonic	Rbm45	nonsynonymous SNV	Rbm45:NM_153405:exon4:c.A629G:p.Q210R	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	76379058	12A2p6	cell line	sgMsh2	76379058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	102	96	28	0.291666667	exonic	Rbm45	synonymous SNV	Rbm45:NM_153405:exon8:c.A1215G:p.L405L	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998216	TAG	synonymous	NA	NA	NA	NA
M6	chr2	76591882	12A2p6	cell line	sgMsh2	76591882	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	108	7	1	0.142857143	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon22:c.A2382C:p.G794G,Osbpl6:NM_001290733:exon24:c.A2475C:p.G825G,Osbpl6:NM_145525:exon24:c.A2499C:p.G833G"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.6868465	GAC	synonymous	NA	NA	NA	NA
M6	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	111	5	0	0	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999126	AGC	synonymous	NA	NA	NA	NA
M6	chr2	76711137	12A2p6	cell line	sgMsh2	76711137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	187	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A76523G:p.Y25508C,Ttn:NM_011652:exon307:c.A96266G:p.Y32089C,Ttn:NM_001385708:exon344:c.A102098G:p.Y34033C"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	76713049	12A2p6	cell line	sgMsh2	76713049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	190	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A74611G:p.T24871A,Ttn:NM_011652:exon307:c.A94354G:p.T31452A,Ttn:NM_001385708:exon344:c.A100186G:p.T33396A"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	76713536	12A2p6	cell line	sgMsh2	76713536	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	250	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon186:c.A74124G:p.E24708E,Ttn:NM_011652:exon307:c.A93867G:p.E31289E,Ttn:NM_001385708:exon344:c.A99699G:p.E33233E"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	GTT	synonymous	NA	NA	NA	NA
M6	chr2	76728398	12A2p6	cell line	sgMsh2	76728398	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	169	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon164:c.A64157G:p.Y21386C,Ttn:NM_011652:exon285:c.A83900G:p.Y27967C,Ttn:NM_001385708:exon322:c.A89732G:p.Y29911C"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	76732118	12A2p6	cell line	sgMsh2	76732118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	222	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon160:c.61401delA:p.K20467Nfs*38,Ttn:NM_011652:exon281:c.81144delA:p.K27048Nfs*38,Ttn:NM_001385708:exon318:c.86976delA:p.K28992Nfs*38"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6	chr2	76739135	12A2p6	cell line	sgMsh2	76739135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	197	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A56432G:p.K18811R,Ttn:NM_011652:exon275:c.A76175G:p.K25392R,Ttn:NM_001385708:exon312:c.A82007G:p.K27336R"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	76744270	12A2p6	cell line	sgMsh2	76744270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	225	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon154:c.A51297G:p.V17099V,Ttn:NM_011652:exon275:c.A71040G:p.V23680V,Ttn:NM_001385708:exon312:c.A76872G:p.V25624V"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTA	synonymous	NA	NA	NA	NA
M6	chr2	76754106	12A2p6	cell line	sgMsh2	76754106	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	233	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon152:c.A41676G:p.S13892S,Ttn:NM_011652:exon273:c.A61419G:p.S20473S,Ttn:NM_001385708:exon310:c.A67251G:p.S22417S"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
M6	chr2	76768907	12A2p6	cell line	sgMsh2	76768907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	226	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon131:c.A32776C:p.N10926H,Ttn:NM_011652:exon252:c.A52519C:p.N17507H,Ttn:NM_001385708:exon289:c.A58351C:p.N19451H"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.04E-08	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr2	76776268	12A2p6	cell line	sgMsh2	76776268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	238	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon118:c.A29316G:p.A9772A,Ttn:NM_011652:exon239:c.A49059G:p.A16353A,Ttn:NM_001385708:exon276:c.A54891G:p.A18297A"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.34E-08	GTG	synonymous	NA	NA	NA	NA
M6	chr2	76778035	12A2p6	cell line	sgMsh2	76778035	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	142	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon116:c.28562delA:p.K9521Rfs*23,Ttn:NM_011652:exon237:c.48305delA:p.K16102Rfs*23,Ttn:NM_001385708:exon274:c.54137delA:p.K18046Rfs*23"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	TTCT	10	TTCTTTCTTT	-1
M6	chr2	76782226	12A2p6	cell line	sgMsh2	76782226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	273	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon107:c.T26527C:p.S8843P,Ttn:NM_011652:exon228:c.T46270C:p.S15424P,Ttn:NM_001385708:exon265:c.T52102C:p.S17368P"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	76789931	12A2p6	cell line	sgMsh2	76789931	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	127	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon93:c.A22578C:p.G7526G,Ttn:NM_011652:exon214:c.A42321C:p.G14107G,Ttn:NM_001385708:exon251:c.A48153C:p.G16051G"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9927911	CTC	synonymous	NA	NA	NA	NA
M6	chr2	76808646	12A2p6	cell line	sgMsh2	76808646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	151	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon66:c.A16710G:p.K5570K,Ttn:NM_011652:exon187:c.A36453G:p.K12151K,Ttn:NM_001385708:exon224:c.A42285G:p.K14095K"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	GTT	synonymous	NA	NA	NA	NA
M6	chr2	76810340	12A2p6	cell line	sgMsh2	76810340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	136	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.A16082G:p.K5361R,Ttn:NM_011652:exon184:c.A35825G:p.K11942R,Ttn:NM_001385708:exon221:c.A41657G:p.K13886R"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	76810518	12A2p6	cell line	sgMsh2	76810518	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	179	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.C15904A:p.L5302I,Ttn:NM_011652:exon184:c.C35647A:p.L11883I,Ttn:NM_001385708:exon221:c.C41479A:p.L13827I"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999989	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	76810937	12A2p6	cell line	sgMsh2	76810937	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	187	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon61:c.A15743C:p.K5248T,Ttn:NM_011652:exon182:c.A35486C:p.K11829T,Ttn:NM_001385708:exon219:c.A41318C:p.K13773T"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	76811367	12A2p6	cell line	sgMsh2	76811367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	273	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon60:c.A15403G:p.T5135A,Ttn:NM_011652:exon181:c.A35146G:p.T11716A,Ttn:NM_001385708:exon218:c.A40978G:p.T13660A"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.21E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	76813481	12A2p6	cell line	sgMsh2	76813481	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	179	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon55:c.C14421T:p.I4807I,Ttn:NM_011652:exon176:c.C34164T:p.I11388I,Ttn:NM_001385708:exon213:c.C39996T:p.I13332I"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999989	GGA	synonymous	NA	NA	NA	NA
M6	chr2	76822458	12A2p6	cell line	sgMsh2	76822458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	158	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon166:c.A32832G:p.Q10944Q,Ttn:NM_001385708:exon203:c.A38664G:p.Q12888Q"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9997333	GTT	synonymous	NA	NA	NA	NA
M6	chr2	76856849	12A2p6	cell line	sgMsh2	76856849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	97	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon123:c.A28392G:p.K9464K,Ttn:NM_001385708:exon125:c.A31449G:p.K10483K"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	GTT	synonymous	T	5	TTTTT	NA
M6	chr2	76945268	12A2p6	cell line	sgMsh2	76945268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	203	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon27:c.T5429C:p.V1810A,Ttn:NM_001385708:exon28:c.T5567C:p.V1856A,Ttn:NM_011652:exon28:c.T5567C:p.V1856A"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	140	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	77015131	12A2p6	cell line	sgMsh2	77015131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	115	6	2	0.333333333	exonic	Ccdc141	synonymous SNV	Ccdc141:NM_001025576:exon23:c.T3591C:p.L1197L	2qC3	chr2-3197272-82253895	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	GAA	synonymous	NA	NA	NA	NA
M6	chr2	82979003	12A2p6	cell line	sgMsh2	82979003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	507	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.T5659C:p.L1887L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9997994	GTT	synonymous	NA	NA	NA	NA
M6	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	220	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.01E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	82983323	12A2p6	cell line	sgMsh2	82983323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	316	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.G9979T:p.A3327S	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9973847	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	82990389	12A2p6	cell line	sgMsh2	82990389	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	328	0	0	NA	exonic	Fsip2	stopgain	Fsip2:NM_001370266:exon17:c.G16459T:p.G5487X	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8093521	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	82990519	12A2p6	cell line	sgMsh2	82990519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	583	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16589G:p.Q5530R	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9950446	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	82992429	12A2p6	cell line	sgMsh2	82992429	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	195	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T18499A:p.S6167T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.5326079	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr2	83803240	12A2p6	cell line	sgMsh2	83803240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	257	22	0.085603113	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3040T:p.M1014L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	83803275	12A2p6	cell line	sgMsh2	83803275	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	291	287	54	0.18815331	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3075C:p.E1025D	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999938	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	309	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	84612086	12A2p6	cell line	sgMsh2	84612086	T	-	Deletion	Mutect2;Vardict	2	0.031	246	852	0	0	exonic	Ctnnd1	frameshift deletion	"Ctnnd1:NM_001085449:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001355067:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001085453:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001355066:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001085448:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001085450:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355064:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355065:exon12:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_007615:exon12:c.1901delA:p.K634Sfs*47"	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr2	84675459	12A2p6	cell line	sgMsh2	84675459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	441	28	3	0.107142857	exonic	Tmx2	synonymous SNV	"Tmx2:NM_001290751:exon3:c.C273T:p.P91P,Tmx2:NM_025868:exon5:c.C387T:p.P129P"	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.665230404	2	9.49E-09	GGG	synonymous	G	5	GGGGG	NA
M6	chr2	84849786	12A2p6	cell line	sgMsh2	84849786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	127	0	0	NA	exonic	Slc43a1	nonsynonymous SNV	"Slc43a1:NM_001083809:exon2:c.T353C:p.L118P,Slc43a1:NM_001081349:exon3:c.T404C:p.L135P,Slc43a1:NM_024497:exon3:c.T275C:p.L92P"	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9998138	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	85054346	12A2p6	cell line	sgMsh2	85054346	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	273	585	78	0.133333333	exonic	Tnks1bp1	synonymous SNV	Tnks1bp1:NM_001081260:exon4:c.T789C:p.P263P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.9482752	CTA	synonymous	NA	NA	NA	NA
M6	chr2	85399824	12A2p6	cell line	sgMsh2	85399824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	335	0	0	NA	exonic	Olfr992	synonymous SNV	Olfr992:NM_146865:exon1:c.A708G:p.K236K	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.04E-09	CTT	synonymous	NA	NA	NA	NA
M6	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	264	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1	GTG	synonymous	NA	NA	NA	NA
M6	chr2	85647893	12A2p6	cell line	sgMsh2	85647893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	524	0	0	NA	exonic	Olfr1002	stopgain	Olfr1002:NM_146573:exon1:c.C427T:p.Q143X	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.7646974	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	85648049	12A2p6	cell line	sgMsh2	85648049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	383	0	0	NA	exonic	Olfr1002	nonsynonymous SNV	Olfr1002:NM_146573:exon1:c.G271A:p.V91M	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	ACC	nonsynonymous	T	5	TTTTT	NA
M6	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Vardict	2	0.033	500	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	AGG	synonymous	NA	NA	NA	NA
M6	chr2	85754028	12A2p6	cell line	sgMsh2	85754028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	260	0	0	NA	exonic	Olfr1010	nonsynonymous SNV	Olfr1010:NM_207149:exon3:c.T658C:p.F220L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9798097	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	430	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	85770150	12A2p6	cell line	sgMsh2	85770150	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	380	0	0	NA	exonic	Olfr1013	synonymous SNV	Olfr1013:NM_146762:exon1:c.C348A:p.A116A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9999827	CCA	synonymous	NA	NA	NA	NA
M6	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	285	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	85799569	12A2p6	cell line	sgMsh2	85799569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	375	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A700G:p.M234V	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9977934	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	85799973	12A2p6	cell line	sgMsh2	85799973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	283	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A296T:p.Q99L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999918	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	85800215	12A2p6	cell line	sgMsh2	85800215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	267	0	0	NA	exonic	Olfr1016	synonymous SNV	Olfr1016:NM_001011758:exon1:c.T54C:p.S18S	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.999696	CAG	synonymous	NA	NA	NA	NA
M6	chr2	85868829	12A2p6	cell line	sgMsh2	85868829	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.149	709	0	0	NA	exonic	Olfr1022	frameshift insertion	Olfr1022:NM_146589:exon1:c.237dupA:p.N80Kfs*31	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	NA	NA	CCA	frameshift	NA	NA	NA	1
M6	chr2	85904396	12A2p6	cell line	sgMsh2	85904396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	170	0	0	NA	exonic	Olfr1024	synonymous SNV	Olfr1024:NM_001005230:exon1:c.C657T:p.I219I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9792732	GGA	synonymous	NA	NA	NA	NA
M6	chr2	85923475	12A2p6	cell line	sgMsh2	85923475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	516	0	0	NA	exonic	Olfr1026	nonsynonymous SNV	Olfr1026:NM_146584:exon1:c.T206C:p.V69A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9999816	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	85951457	12A2p6	cell line	sgMsh2	85951457	T	C	SNV	Mutect2;MuSe;Vardict	3	0.136	98	0	0	NA	exonic	Olfr1028	synonymous SNV	Olfr1028:NM_001011774:exon1:c.T393C:p.R131R	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	7.84E-09	GTT	synonymous	NA	NA	NA	NA
M6	chr2	85992807	12A2p6	cell line	sgMsh2	85992807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	191	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A989G:p.Y330C	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.5634629	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86041816	12A2p6	cell line	sgMsh2	86041816	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.142	736	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G500A:p.C167Y	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.9997748	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86042133	12A2p6	cell line	sgMsh2	86042133	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	361	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G817A:p.A273T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9999668	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	86046756	12A2p6	cell line	sgMsh2	86046756	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	592	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.T273G:p.S91S	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9983776	CTT	synonymous	NA	NA	NA	NA
M6	chr2	86084983	12A2p6	cell line	sgMsh2	86084983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	389	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A793G:p.S265G	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9997696	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86085501	12A2p6	cell line	sgMsh2	86085501	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	174	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.T275C:p.I92T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9764905	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86085539	12A2p6	cell line	sgMsh2	86085539	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	197	0	0	NA	exonic	Olfr1037	frameshift deletion	Olfr1037:NM_001011532:exon1:c.237delC:p.K80Sfs*25	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr2	86131294	12A2p6	cell line	sgMsh2	86131294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	558	0	0	NA	exonic	Olfr1039	nonsynonymous SNV	Olfr1039:NM_001011784:exon1:c.A368G:p.Y123C	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9997182	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	86146018	12A2p6	cell line	sgMsh2	86146018	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	538	0	0	NA	exonic	Olfr1040	frameshift deletion	Olfr1040:NM_207561:exon1:c.715delT:p.S239Pfs*6	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr2	86170923	12A2p6	cell line	sgMsh2	86170923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	241	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.A893C:p.K298T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86170996	12A2p6	cell line	sgMsh2	86170996	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	229	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G820A:p.A274T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.7101859	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	86181246	12A2p6	cell line	sgMsh2	86181246	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.121	193	0	0	NA	exonic	Olfr52	frameshift insertion	Olfr52:NM_146583:exon1:c.863dupT:p.L288Ffs*20	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	NA	NA	TCA	frameshift	NA	NA	NA	1
M6	chr2	86198171	12A2p6	cell line	sgMsh2	86198171	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	334	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.C580A:p.L194I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.563299939	2	1.01E-09	AGG	nonsynonymous	AGGT	8	AGGTAGGT	NA
M6	chr2	86217371	12A2p6	cell line	sgMsh2	86217371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	403	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.C338A:p.T113N	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.9532749	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86275913	12A2p6	cell line	sgMsh2	86275913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	496	0	0	NA	exonic	Olfr1051	nonsynonymous SNV	Olfr1051:NM_207562:exon1:c.T573G:p.H191Q	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.962823	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86275949	12A2p6	cell line	sgMsh2	86275949	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	530	0	0	NA	exonic	Olfr1051	stopgain	Olfr1051:NM_207562:exon1:c.T537A:p.C179X	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	2	7.22E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	86298531	12A2p6	cell line	sgMsh2	86298531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	294	0	0	NA	exonic	Olfr1052	nonsynonymous SNV	Olfr1052:NM_147010:exon1:c.C714A:p.F238L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8164017	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86298731	12A2p6	cell line	sgMsh2	86298731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	128	0	0	NA	exonic	Olfr1052	nonsynonymous SNV	Olfr1052:NM_147010:exon1:c.T914C:p.I305T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8753611	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	86332428	12A2p6	cell line	sgMsh2	86332428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	165	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T927A:p.N309K	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.09423898	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86332927	12A2p6	cell line	sgMsh2	86332927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	272	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T428C:p.V143A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.999995	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	86347285	12A2p6	cell line	sgMsh2	86347285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	295	0	0	NA	exonic	Olfr1055	synonymous SNV	"Olfr1055:NM_001310551:exon1:c.T480C:p.I160I,Olfr1055:NM_147021:exon1:c.T480C:p.I160I"	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8161972	TAA	synonymous	NA	NA	NA	NA
M6	chr2	86374619	12A2p6	cell line	sgMsh2	86374619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	435	0	0	NA	exonic	Olfr1057	synonymous SNV	Olfr1057:NM_207563:exon1:c.T792G:p.T264T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9999999	TAG	synonymous	NA	NA	NA	NA
M6	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Vardict	2	0.024	400	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	AAA	synonymous	NA	NA	NA	NA
M6	chr2	86413272	12A2p6	cell line	sgMsh2	86413272	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	283	0	0	NA	exonic	Olfr1061	stopgain	Olfr1061:NM_207134:exon1:c.T779A:p.L260X	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9962741	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	86423263	12A2p6	cell line	sgMsh2	86423263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	655	0	0	NA	exonic	Olfr1062	stopgain	Olfr1062:NM_147078:exon1:c.C412T:p.R138X	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	1.00E-09	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr2	86483115	12A2p6	cell line	sgMsh2	86483115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	258	0	0	NA	exonic	Olfr228	nonsynonymous SNV	Olfr228:NM_146405:exon1:c.C626A:p.T209N	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9989214	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	86657968	12A2p6	cell line	sgMsh2	86657968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	410	0	0	NA	exonic	Olfr1085	synonymous SNV	Olfr1085:NM_146590:exon1:c.A489G:p.L163L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	1.01E-09	ATA	synonymous	NA	NA	NA	NA
M6	chr2	86732789	12A2p6	cell line	sgMsh2	86732789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	215	0	0	NA	exonic	Olfr1089	synonymous SNV	Olfr1089:NM_001011771:exon1:c.A822G:p.A274A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.9548423	ATG	synonymous	GATG	8	GATGGATG	NA
M6	chr2	86753861	12A2p6	cell line	sgMsh2	86753861	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	234	0	0	NA	exonic	Olfr1090	synonymous SNV	Olfr1090:NM_146847:exon1:c.G876A:p.L292L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9837789	TCA	synonymous	NA	NA	NA	NA
M6	chr2	86829125	12A2p6	cell line	sgMsh2	86829125	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	316	0	0	NA	exonic	Olfr1094	synonymous SNV	Olfr1094:NM_146365:exon1:c.C372T:p.C124C	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.9309605	GCT	synonymous	NA	NA	NA	NA
M6	chr2	86829277	12A2p6	cell line	sgMsh2	86829277	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	326	0	0	NA	exonic	Olfr1094	nonsynonymous SNV	Olfr1094:NM_146365:exon1:c.C524A:p.T175N	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.9963306	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr2	86890262	12A2p6	cell line	sgMsh2	86890262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	336	0	0	NA	exonic	Olfr1097	synonymous SNV	Olfr1097:NM_146843:exon2:c.T912C:p.V304V	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.6961766	TAA	synonymous	NA	NA	NA	NA
M6	chr2	86890419	12A2p6	cell line	sgMsh2	86890419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	373	0	0	NA	exonic	Olfr1097	nonsynonymous SNV	Olfr1097:NM_146843:exon2:c.A755G:p.Y252C	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	2	0.6531422	ATA	nonsynonymous	A	5	AAAAA	NA
M6	chr2	86923173	12A2p6	cell line	sgMsh2	86923173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	505	0	0	NA	exonic	Olfr1098	nonsynonymous SNV	Olfr1098:NM_146845:exon1:c.T358C:p.Y120H	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9999994	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	86958907	12A2p6	cell line	sgMsh2	86958907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	237	0	0	NA	exonic	Olfr1099	nonsynonymous SNV	Olfr1099:NM_146768:exon1:c.C550T:p.L184F	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.999938	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	87002062	12A2p6	cell line	sgMsh2	87002062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	347	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.A92G:p.D31G	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	1.20E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	87136044	12A2p6	cell line	sgMsh2	87136044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	368	0	0	NA	exonic	Olfr1110	synonymous SNV	Olfr1110:NM_146769:exon2:c.T276C:p.S92S	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9976129	TAC	synonymous	NA	NA	NA	NA
M6	chr2	87149894	12A2p6	cell line	sgMsh2	87149894	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	0	0	NA	exonic	Olfr1111	nonsynonymous SNV	Olfr1111:NM_146593:exon1:c.C766A:p.L256M	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	2	0.9998483	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.02	329	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.107295226	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	87212904	12A2p6	cell line	sgMsh2	87212904	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	394	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.A11T:p.K4I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	1.07E-09	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	87252590	12A2p6	cell line	sgMsh2	87252590	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	547	0	0	NA	exonic	Olfr1115	nonsynonymous SNV	Olfr1115:NM_146297:exon1:c.G652C:p.V218L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9999915	TGT	nonsynonymous	T	5	TTTTT	NA
M6	chr2	87252877	12A2p6	cell line	sgMsh2	87252877	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.133	214	0	0	NA	exonic	Olfr1115	frameshift insertion	Olfr1115:NM_146297:exon1:c.940dupG:p.A315Gfs*15	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	NA	NA	CAG	frameshift	NA	NA	NA	1
M6	chr2	87418564	12A2p6	cell line	sgMsh2	87418564	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.127	369	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.515delA:p.T173Hfs*34	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr2	87457588	12A2p6	cell line	sgMsh2	87457588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	486	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.T422C:p.V141A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	87489731	12A2p6	cell line	sgMsh2	87489731	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	221	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon3:c.A1217T:p.Q406L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9998443	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	87491385	12A2p6	cell line	sgMsh2	87491385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	186	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.T305C:p.V102A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9993978	AAC	nonsynonymous	T	5	TTTTT	NA
M6	chr2	87575824	12A2p6	cell line	sgMsh2	87575824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	549	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.T739C:p.C247R	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9996882	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	87645506	12A2p6	cell line	sgMsh2	87645506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	547	0	0	NA	exonic	Olfr1133	nonsynonymous SNV	Olfr1133:NM_146351:exon1:c.T616G:p.C206G	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	1.17E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.165	457	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	NA	NA	CAT	frameshift	NA	NA	NA	1
M6	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	297	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.45E-09	AAT	synonymous	NA	NA	NA	NA
M6	chr2	87802800	12A2p6	cell line	sgMsh2	87802800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	355	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.C410T:p.T137I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9999686	ACA	nonsynonymous	AACA	8	AACAAACA	NA
M6	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	338	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	87833305	12A2p6	cell line	sgMsh2	87833305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	289	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T265C:p.F89L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8174212	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	87833436	12A2p6	cell line	sgMsh2	87833436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	414	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.A396G:p.I132M	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	611	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	87943158	12A2p6	cell line	sgMsh2	87943158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	188	0	0	NA	exonic	Olfr1155	nonsynonymous SNV	Olfr1155:NM_146643:exon1:c.T469C:p.C157R	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.999999	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	87961977	12A2p6	cell line	sgMsh2	87961977	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	269	0	0	NA	exonic	Olfr1157	nonsynonymous SNV	Olfr1157:NM_146849:exon2:c.T914A:p.V305E	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.9992562	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	311	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9974122	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88006235	12A2p6	cell line	sgMsh2	88006235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	601	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.T542C:p.V181A	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.9623342	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Vardict	2	0.041	470	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr2	88070610	12A2p6	cell line	sgMsh2	88070610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	315	0	0	NA	exonic	Olfr1163	nonsynonymous SNV	Olfr1163:NM_146644:exon1:c.A771G:p.I257M	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	2	0.559744	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	88185810	12A2p6	cell line	sgMsh2	88185810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	160	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.C932T:p.T311I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.6919999	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr2	88339906	12A2p6	cell line	sgMsh2	88339906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	322	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.T340C:p.F114L	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9999993	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88339985	12A2p6	cell line	sgMsh2	88339985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	356	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A419G:p.K140R	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	8.29E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88340206	12A2p6	cell line	sgMsh2	88340206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	295	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A640G:p.I214V	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9981249	TAT	nonsynonymous	ATC	8	ATCATCAT	NA
M6	chr2	88391383	12A2p6	cell line	sgMsh2	88391383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	433	0	0	NA	exonic	Olfr1178	synonymous SNV	Olfr1178:NM_001011868:exon1:c.T135C:p.I45I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8892673	TTT	synonymous	NA	NA	NA	NA
M6	chr2	88392008	12A2p6	cell line	sgMsh2	88392008	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	278	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.T760A:p.F254I	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.99999	GTT	nonsynonymous	TTTA	8	TTTATTTA	NA
M6	chr2	88402653	12A2p6	cell line	sgMsh2	88402653	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	222	0	0	NA	exonic	Olfr1179	frameshift deletion	Olfr1179:NM_146917:exon1:c.280delA:p.S94Afs*21	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr2	88412415	12A2p6	cell line	sgMsh2	88412415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	233	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.T242C:p.L81P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9999127	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88423567	12A2p6	cell line	sgMsh2	88423567	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	378	0	0	NA	exonic	Olfr1181	nonsynonymous SNV	Olfr1181:NM_001011816:exon1:c.C457A:p.H153N	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9994368	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88446554	12A2p6	cell line	sgMsh2	88446554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	371	0	0	NA	exonic	Olfr1182	nonsynonymous SNV	Olfr1182:NM_001011535:exon3:c.T383C:p.L128P	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9993301	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88682960	12A2p6	cell line	sgMsh2	88682960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	231	0	0	NA	exonic	Olfr1195	synonymous SNV	Olfr1195:NM_146753:exon1:c.A771G:p.T257T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9997365	GTG	synonymous	NA	NA	NA	NA
M6	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.026	292	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88700603	12A2p6	cell line	sgMsh2	88700603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	495	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T725C:p.I242T	2qD	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9999973	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Vardict	2	0.028	556	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	CTA	synonymous	ACT	8	ACTACTAC	NA
M6	chr2	88746012	12A2p6	cell line	sgMsh2	88746012	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	427	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.A875C:p.K292T	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	1.35E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Vardict	2	0.032	445	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	AGG	synonymous	NA	NA	NA	NA
M6	chr2	88756087	12A2p6	cell line	sgMsh2	88756087	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	399	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.T587G:p.L196R,Olfr1199:NM_146458:exon2:c.T587G:p.L196R"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9965466	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	88767954	12A2p6	cell line	sgMsh2	88767954	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	487	0	0	NA	exonic	Olfr1200	synonymous SNV	Olfr1200:NM_001005227:exon1:c.C360A:p.R120R	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	4.11E-08	AGC	synonymous	NA	NA	NA	NA
M6	chr2	88896799	12A2p6	cell line	sgMsh2	88896799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	494	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.A797G:p.K266R	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	2.77E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88929666	12A2p6	cell line	sgMsh2	88929666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	567	0	0	NA	exonic	Olfr1211	synonymous SNV	Olfr1211:NM_001011804:exon1:c.C648T:p.S216S	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	2	0.9999993	AGG	synonymous	NA	NA	NA	NA
M6	chr2	88929956	12A2p6	cell line	sgMsh2	88929956	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	433	0	0	NA	exonic	Olfr1211	nonsynonymous SNV	Olfr1211:NM_001011804:exon1:c.G358A:p.D120N	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9974935	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr2	88973316	12A2p6	cell line	sgMsh2	88973316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	504	0	0	NA	exonic	Olfr1213	nonsynonymous SNV	Olfr1213:NM_146898:exon3:c.T574A:p.Y192N	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.9942593	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	435	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	TAA	synonymous	NA	NA	NA	NA
M6	chr2	89001870	12A2p6	cell line	sgMsh2	89001870	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	372	0	0	NA	exonic	Olfr1215	synonymous SNV	Olfr1215:NM_146459:exon1:c.C417A:p.L139L	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.7999245	AGA	synonymous	NA	NA	NA	NA
M6	chr2	89002089	12A2p6	cell line	sgMsh2	89002089	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.148	290	0	0	NA	exonic	Olfr1215	synonymous SNV	Olfr1215:NM_146459:exon1:c.C198T:p.S66S	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.7260743	AGG	synonymous	NA	NA	NA	NA
M6	chr2	89112330	12A2p6	cell line	sgMsh2	89112330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	465	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T181C:p.F61L	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	2	1.00E-09	AAG	nonsynonymous	AAG	9	AAGAAGAAG	NA
M6	chr2	89112332	12A2p6	cell line	sgMsh2	89112332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	466	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T179C:p.F60S	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8906876	GAA	nonsynonymous	AAG	9	AAGAAGAAG	NA
M6	chr2	89296856	12A2p6	cell line	sgMsh2	89296856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	236	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.T413C:p.V138A	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	89339668	12A2p6	cell line	sgMsh2	89339668	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	398	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.C633A:p.S211S	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	AGG	synonymous	NA	NA	NA	NA
M6	chr2	89439637	12A2p6	cell line	sgMsh2	89439637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	386	0	0	NA	exonic	Olfr1240	nonsynonymous SNV	Olfr1240:NM_146808:exon1:c.T641C:p.V214A	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8872166	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Vardict	2	0.032	380	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	89528088	12A2p6	cell line	sgMsh2	89528088	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	317	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.T321G:p.G107G	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9999955	CAC	synonymous	NA	NA	NA	NA
M6	chr2	89574963	12A2p6	cell line	sgMsh2	89574963	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	208	0	0	NA	exonic	Olfr1245	frameshift deletion	Olfr1245:NM_146788:exon1:c.762delT:p.F254Lfs*26	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	NA	NA	TAA	frameshift	CATA	8	CATACATA	-1
M6	chr2	89575481	12A2p6	cell line	sgMsh2	89575481	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	345	0	0	NA	exonic	Olfr1245	nonsynonymous SNV	Olfr1245:NM_146788:exon1:c.G244A:p.D82N	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9998024	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	89590257	12A2p6	cell line	sgMsh2	89590257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	143	0	0	NA	exonic	Olfr1246	nonsynonymous SNV	Olfr1246:NM_146792:exon1:c.C857T:p.T286I	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	2	0.8974319	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	89609883	12A2p6	cell line	sgMsh2	89609883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	605	0	0	NA	exonic	Olfr1247	nonsynonymous SNV	Olfr1247:NM_146966:exon1:c.C218A:p.T73N	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	1	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	89657283	12A2p6	cell line	sgMsh2	89657283	A	G	SNV	Mutect2;Vardict	2	0.018	558	0	0	NA	exonic	Olfr1250	synonymous SNV	Olfr1250:NM_146965:exon1:c.T157C:p.L53L	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.096565704	3	1	AAG	synonymous	NA	NA	NA	NA
M6	chr2	89788829	12A2p6	cell line	sgMsh2	89788829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	279	0	0	NA	exonic	Olfr1254	synonymous SNV	Olfr1254:NM_146476:exon1:c.T522C:p.H174H	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999992	AAT	synonymous	NA	NA	NA	NA
M6	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Vardict	2	0.029	268	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	89930592	12A2p6	cell line	sgMsh2	89930592	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	309	0	0	NA	exonic	Olfr1258	nonsynonymous SNV	Olfr1258:NM_146978:exon1:c.C782T:p.A261V	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	90139121	12A2p6	cell line	sgMsh2	90139121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	383	0	0	NA	exonic	Olfr32	nonsynonymous SNV	Olfr32:NM_010980:exon5:c.T17G:p.V6G	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9999998	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	90149482	12A2p6	cell line	sgMsh2	90149482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	418	0	0	NA	exonic	Olfr1270	nonsynonymous SNV	Olfr1270:NM_146985:exon1:c.T523C:p.Y175H	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9729812	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	90810714	12A2p6	cell line	sgMsh2	90810714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	106	0	0	NA	exonic	Agbl2	nonsynonymous SNV	"Agbl2:NM_001356533:exon15:c.A2180G:p.Y727C,Agbl2:NM_178755:exon15:c.A2180G:p.Y727C"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9680518	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	91063372	12A2p6	cell line	sgMsh2	91063372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	118	39	4	0.102564103	exonic	Slc39a13	synonymous SNV	"Slc39a13:NM_001290765:exon8:c.A897G:p.G299G,Slc39a13:NM_026721:exon8:c.A858G:p.G286G"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9959321	CTC	synonymous	NA	NA	NA	NA
M6	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	359	92	33	0.358695652	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	1.01E-09	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	91167572	12A2p6	cell line	sgMsh2	91167572	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	54	67	11	0.164179104	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon11:c.A2110G:p.T704A,Madd:NM_001177719:exon12:c.A2110G:p.T704A,Madd:NM_145527:exon12:c.A2110G:p.T704A"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.488193281	2	0.8206682	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	91278916	12A2p6	cell line	sgMsh2	91278916	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	83	58	13	0.224137931	exonic	1110051M20Rik	nonsynonymous SNV	1110051M20Rik:NM_175123:exon9:c.C863T:p.T288I	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9993745	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	248	53	6	0.113207547	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.999997	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	91564413	12A2p6	cell line	sgMsh2	91564413	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.132	224	113	2	0.017699115	exonic	Ckap5	frameshift deletion	"Ckap5:NM_029437:exon11:c.1432delT:p.L479fs*0,Ckap5:NM_001165989:exon12:c.1432delT:p.L479fs*0"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr2	91585795	12A2p6	cell line	sgMsh2	91585795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	209	122	22	0.180327869	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon24:c.A3065G:p.H1022R,Ckap5:NM_001165989:exon25:c.A3065G:p.H1022R"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9902658	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	91606329	12A2p6	cell line	sgMsh2	91606329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	310	121	19	0.157024793	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.G4773T:p.Q1591H,Ckap5:NM_001165989:exon36:c.G4773T:p.Q1591H"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.9999886	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	91606343	12A2p6	cell line	sgMsh2	91606343	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	360	125	18	0.144	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.A4787T:p.Y1596F,Ckap5:NM_001165989:exon36:c.A4787T:p.Y1596F"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9999993	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	91668289	12A2p6	cell line	sgMsh2	91668289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	316	412	59	0.143203883	exonic	Arhgap1	nonsynonymous SNV	"Arhgap1:NM_001145902:exon5:c.T530C:p.L177P,Arhgap1:NM_146124:exon5:c.T410C:p.L137P,Arhgap1:NM_001359970:exon6:c.T410C:p.L137P"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.8760945	CTC	nonsynonymous	CCCT	9	CCCTCCCTC	NA
M6	chr2	92953470	12A2p6	cell line	sgMsh2	92953470	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	166	0	0	NA	exonic	Syt13	nonsynonymous SNV	Syt13:NM_030725:exon6:c.T1084G:p.F362V	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7442395	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	93677384	12A2p6	cell line	sgMsh2	93677384	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	98	0	0	NA	exonic	Alx4	synonymous SNV	Alx4:NM_007442:exon4:c.T1023A:p.S341S	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9876414	CTG	synonymous	NA	NA	NA	NA
M6	chr2	93704611	12A2p6	cell line	sgMsh2	93704611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	182	234	24	0.102564103	exonic	Ext2	nonsynonymous SNV	"Ext2:NM_010163:exon12:c.T1807C:p.Y603H,Ext2:NM_001355075:exon13:c.T1852C:p.Y618H"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.9321755	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	93841940	12A2p6	cell line	sgMsh2	93841940	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	162	8	0	0	exonic	Accs	synonymous SNV	"Accs:NM_001290782:exon7:c.T582C:p.P194P,Accs:NM_183220:exon7:c.T513C:p.P171P"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.05E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr2	94324433	12A2p6	cell line	sgMsh2	94324433	T	C	SNV	Mutect2;Vardict	2	0.024	229	62	3	0.048387097	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon20:c.A2875G:p.T959A,Ttc17:NM_183106:exon21:c.A3046G:p.T1016A"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.128754272	3	1	GTA	nonsynonymous	ATGC	8	ATGCATGC	NA
M6	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	101	79	4	0.050632911	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82255917-94430128	7	5	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999034	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	97629518	12A2p6	cell line	sgMsh2	97629518	T	-	Deletion	Strelka2;Vardict	2	0.2083	168	0	0	NA	exonic	Lrrc4c	frameshift deletion	"Lrrc4c:NM_001289744:exon2:c.488delT:p.I163Tfs*16,Lrrc4c:NM_178725:exon3:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363049:exon4:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289743:exon7:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289742:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363048:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363047:exon9:c.488delT:p.I163Tfs*16"	2qE1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATC	frameshift	NA	NA	NA	-1
M6	chr2	103082989	12A2p6	cell line	sgMsh2	103082989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	176	49	5	0.102040816	exonic	Apip	nonsynonymous SNV	"Apip:NM_001355473:exon2:c.T89C:p.L30P,Apip:NM_019735:exon2:c.T89C:p.L30P"	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	103775493	12A2p6	cell line	sgMsh2	103775493	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	192	739	27	0.036535859	exonic	Caprin1	synonymous SNV	"Caprin1:NM_001111289:exon10:c.T1149C:p.L383L,Caprin1:NM_001111290:exon10:c.T1122C:p.L374L,Caprin1:NM_001111292:exon10:c.T1149C:p.L383L,Caprin1:NM_001111291:exon11:c.T1149C:p.L383L,Caprin1:NM_016739:exon11:c.T1149C:p.L383L"	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	CAA	synonymous	NA	NA	NA	NA
M6	chr2	104645002	12A2p6	cell line	sgMsh2	104645002	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	146	68	10	0.147058824	exonic	Cstf3	nonsynonymous SNV	Cstf3:NM_145529:exon5:c.G282T:p.K94N	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999903	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	104690590	12A2p6	cell line	sgMsh2	104690590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	106	43	8	0.186046512	exonic	Tcp11l1	nonsynonymous SNV	Tcp11l1:NM_177190:exon6:c.G679A:p.A227T	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998631	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	104723147	12A2p6	cell line	sgMsh2	104723147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	407	104	26	0.25	exonic	Depdc7	synonymous SNV	Depdc7:NM_144804:exon7:c.A1155G:p.V385V	2qE2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M6	chr2	106351587	12A2p6	cell line	sgMsh2	106351587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	91	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon11:c.G540A:p.E180E	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	AGG	synonymous	NA	NA	NA	NA
M6	chr2	106861512	12A2p6	cell line	sgMsh2	106861512	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	132	0	0	NA	exonic	Mpped2	synonymous SNV	"Mpped2:NM_001356555:exon4:c.C183T:p.G61G,Mpped2:NM_001143683:exon5:c.C561T:p.G187G,Mpped2:NM_001356554:exon5:c.C561T:p.G187G,Mpped2:NM_029837:exon5:c.C561T:p.G187G"	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GCT	synonymous	NA	NA	NA	NA
M6	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	277	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	2.37E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	110265593	12A2p6	cell line	sgMsh2	110265593	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	153	0	0	NA	exonic	Bbox1	nonsynonymous SNV	Bbox1:NM_130452:exon7:c.A1025T:p.N342I	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.6895654	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	110362216	12A2p6	cell line	sgMsh2	110362216	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	144	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A580T:p.I194F	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	110616679	12A2p6	cell line	sgMsh2	110616679	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.154	106	0	0	NA	exonic	Slc5a12	frameshift deletion	"Slc5a12:NM_001003915:exon5:c.531delT:p.L178fs*0,Slc5a12:NM_001177624:exon5:c.531delT:p.L178fs*0"	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	NA	NA	GTT	frameshift	G	6	GGGGGG	-1
M6	chr2	111094799	12A2p6	cell line	sgMsh2	111094799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	127	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon57:c.C4094T:p.P1365L	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	111105990	12A2p6	cell line	sgMsh2	111105990	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	66	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon50:c.3629delA:p.N1210Ifs*31	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr2	111134225	12A2p6	cell line	sgMsh2	111134225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	186	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon38:c.A2819G:p.N940S	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999993	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	111170296	12A2p6	cell line	sgMsh2	111170296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	131	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon20:c.G1693T:p.A565S	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999737	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	111190394	12A2p6	cell line	sgMsh2	111190394	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.233	123	0	0	NA	exonic	A26c3	frameshift insertion	A26c3:NM_001378593:exon17:c.1483dupT:p.S495Ffs*1	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M6	chr2	111227935	12A2p6	cell line	sgMsh2	111227935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	309	0	0	NA	exonic	A26c3	nonsynonymous SNV	"A26c3:NM_001378593:exon3:c.T512C:p.M171T,A26c3:NM_026248:exon3:c.T512C:p.M171T"	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.21E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	111257558	12A2p6	cell line	sgMsh2	111257558	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	206	0	0	NA	exonic	Olfr1276	nonsynonymous SNV	Olfr1276:NM_146395:exon1:c.G442C:p.A148P	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	609	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	AGG	synonymous	NA	NA	NA	NA
M6	chr2	111449611	12A2p6	cell line	sgMsh2	111449611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	761	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.T470C:p.M157T	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	229	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	AAT	synonymous	NA	NA	NA	NA
M6	chr2	111537775	12A2p6	cell line	sgMsh2	111537775	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	316	0	0	NA	exonic	Olfr1294	synonymous SNV	Olfr1294:NM_146885:exon1:c.C513A:p.P171P	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	TGG	synonymous	NA	NA	NA	NA
M6	chr2	111537918	12A2p6	cell line	sgMsh2	111537918	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	377	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.G370C:p.V124L	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	262	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	111814073	12A2p6	cell line	sgMsh2	111814073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	121	0	0	NA	exonic	Olfr1303	nonsynonymous SNV	Olfr1303:NM_146402:exon1:c.T652C:p.Y218H	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999492	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	112071871	12A2p6	cell line	sgMsh2	112071871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	230	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T711A:p.S237S	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.89E-08	TAG	synonymous	NA	NA	NA	NA
M6	chr2	112091992	12A2p6	cell line	sgMsh2	112091992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	315	0	0	NA	exonic	Olfr1314	synonymous SNV	Olfr1314:NM_146450:exon1:c.T708C:p.A236A	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	6.23E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr2	112266999	12A2p6	cell line	sgMsh2	112266999	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	94	33	6	0.181818182	exonic	Slc12a6	nonsynonymous SNV	"Slc12a6:NM_001362700:exon1:c.A178T:p.M60L,Slc12a6:NM_133649:exon1:c.A178T:p.M60L"	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9982394	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	128	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.999968	AAC	nonsynonymous	A	5	AAAAA	NA
M6	chr2	114101619	12A2p6	cell line	sgMsh2	114101619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	99	120	18	0.15	exonic	Aqr	synonymous SNV	Aqr:NM_009702:exon35:c.A4266G:p.T1422T	2qE4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	2	0.9921733	GTG	synonymous	NA	NA	NA	NA
M6	chr2	114105839	12A2p6	cell line	sgMsh2	114105839	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	182	105	5	0.047619048	exonic	Aqr	synonymous SNV	"Aqr:NM_001290788:exon33:c.G4002A:p.L1334L,Aqr:NM_009702:exon33:c.G4002A:p.L1334L"	2qE4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	3.61E-09	GCA	synonymous	NA	NA	NA	NA
M6	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	143	16	5	0.3125	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	2.27E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr2	117153037	12A2p6	cell line	sgMsh2	117153037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	96	152	30	0.197368421	exonic	Spred1	synonymous SNV	"Spred1:NM_001277256:exon2:c.C78T:p.D26D,Spred1:NM_033524:exon2:c.C78T:p.D26D"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997349	ACT	synonymous	NA	NA	NA	NA
M6	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	207	170	43	0.252941176	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	118823465	12A2p6	cell line	sgMsh2	118823465	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	154	106	10	0.094339623	exonic	Knstrn	synonymous SNV	Knstrn:NM_026412:exon5:c.T522C:p.D174D	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.46E-09	ATA	synonymous	A	5	AAAAA	NA
M6	chr2	118927583	12A2p6	cell line	sgMsh2	118927583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	130	17	3	0.176470588	exonic	Chst14	nonsynonymous SNV	Chst14:NM_028117:exon1:c.A932G:p.E311G	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999213	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	119022129	12A2p6	cell line	sgMsh2	119022129	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	152	42	11	0.261904762	exonic	Ccdc32	nonsynonymous SNV	Ccdc32:NM_199310:exon3:c.G341A:p.R114Q	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	119069078	12A2p6	cell line	sgMsh2	119069078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	152	20	2	0.1	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1259T:p.K420M,Knl1:NM_029617:exon8:c.A1259T:p.K420M"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999502	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	119069506	12A2p6	cell line	sgMsh2	119069506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	151	20	5	0.25	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1687G:p.S563G,Knl1:NM_029617:exon8:c.A1687G:p.S563G"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	AAG	nonsynonymous	TAAGT	17	TAAGTTAAGTCAAGTTA	NA
M6	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.1813	171	46	5	0.108695652	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.972631228	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M6	chr2	119210530	12A2p6	cell line	sgMsh2	119210530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	86	62	15	0.241935484	exonic	Zfyve19	nonsynonymous SNV	"Zfyve19:NM_001164827:exon2:c.T103C:p.F35L,Zfyve19:NM_028054:exon2:c.T103C:p.F35L"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	119270688	12A2p6	cell line	sgMsh2	119270688	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	121	1	0	0	exonic	Rhov	synonymous SNV	Rhov:NM_145530:exon2:c.A261T:p.A87A	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9996049	CTG	synonymous	CCTGC	10	CCTGCCCTGC	NA
M6	chr2	119293418	12A2p6	cell line	sgMsh2	119293418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	112	45	3	0.066666667	exonic	Vps18	synonymous SNV	Vps18:NM_172269:exon4:c.T825C:p.P275P	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9943633	CTA	synonymous	NA	NA	NA	NA
M6	chr2	119751679	12A2p6	cell line	sgMsh2	119751679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	13	4	0.307692308	exonic	Ltk	nonsynonymous SNV	"Ltk:NM_008523:exon14:c.A1654G:p.R552G,Ltk:NM_206941:exon15:c.A1837G:p.R613G,Ltk:NM_206942:exon19:c.A2407G:p.R803G,Ltk:NM_203345:exon20:c.A2590G:p.R864G"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9906932	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	56	18	6	0.333333333	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9952748	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	120171767	12A2p6	cell line	sgMsh2	120171767	G	T	SNV	Mutect2;Vardict	2	0.038	157	0	0	NA	exonic	Pla2g4e	synonymous SNV	"Pla2g4e:NM_001363091:exon16:c.C687A:p.T229T,Pla2g4e:NM_177845:exon16:c.C1806A:p.T602T,Pla2g4e:NM_001363090:exon17:c.C1539A:p.T513T"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.31E-09	AGG	synonymous	NA	NA	NA	NA
M6	chr2	120191246	12A2p6	cell line	sgMsh2	120191246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.T380C:p.L127P,Pla2g4e:NM_001363090:exon4:c.T113C:p.L38P"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	120533940	12A2p6	cell line	sgMsh2	120533941	TT	CC	DBS	Mutect2;Vardict	2	0.159	168	221	57	0.257918552	exonic	Zfp106	nonframeshift substitution	Zfp106:NM_011743:exon5:c.2053_2054GG:p.N685G	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	120607915	12A2p6	cell line	sgMsh2	120607915	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	117	15	0	0	exonic	Lrrc57	frameshift deletion	"Lrrc57:NM_001159609:exon4:c.451delC:p.Q151Sfs*3,Lrrc57:NM_001159610:exon4:c.502delC:p.Q168Sfs*3,Lrrc57:NM_001159612:exon4:c.376delC:p.Q126Sfs*3,Lrrc57:NM_025657:exon4:c.376delC:p.Q126Sfs*3"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr2	120677961	12A2p6	cell line	sgMsh2	120677961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	196	2	0	0	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon10:c.A749G:p.N250S	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999951	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	120719193	12A2p6	cell line	sgMsh2	120719193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	150	13	4	0.307692308	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon27:c.A3542G:p.H1181R	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	171	10	0	0	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9974592	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	120882258	12A2p6	cell line	sgMsh2	120882258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	134	55	12	0.218181818	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon38:c.C4193T:p.T1398I	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	120947880	12A2p6	cell line	sgMsh2	120947880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	42	40	11	0.275	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon6:c.T676C:p.Y226H	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9906932	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	120955715	12A2p6	cell line	sgMsh2	120955715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	66	53	11	0.20754717	exonic	Ubr1	synonymous SNV	Ubr1:NM_009461:exon4:c.T423C:p.H141H	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9941449	TAT	synonymous	NA	NA	NA	NA
M6	chr2	121021461	12A2p6	cell line	sgMsh2	121021461	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	88	0	0	NA	exonic	Epb42	frameshift deletion	Epb42:NM_013513:exon12:c.1851delC:p.M618Cfs*50	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	142	36	1	0.027777778	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.009935857	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	121343482	12A2p6	cell line	sgMsh2	121343482	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	248	17	5	0.294117647	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon10:c.G1157T:p.G386V	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.25E-08	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	121348482	12A2p6	cell line	sgMsh2	121348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	231	29	6	0.206896552	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon7:c.T762C:p.D254D	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9990815	CAT	synonymous	NA	NA	NA	NA
M6	chr2	121348531	12A2p6	cell line	sgMsh2	121348531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	199	21	9	0.428571429	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon7:c.G713A:p.S238N	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999993	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr2	121548711	12A2p6	cell line	sgMsh2	121548711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	104	4	0	0	exonic	Frmd5	nonsynonymous SNV	Frmd5:NM_001360084:exon14:c.A1657G:p.R553G	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9997968	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	122059523	12A2p6	cell line	sgMsh2	122059523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	119	49	12	0.244897959	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon34:c.T6337C:p.F2113L	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999029	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	122108151	12A2p6	cell line	sgMsh2	122108151	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	59	32	0	0	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon6:c.T1321C:p.C441R	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	122123858	12A2p6	cell line	sgMsh2	122123858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	159	0	0	NA	exonic	Patl2	nonsynonymous SNV	Patl2:NM_026251:exon15:c.G1231A:p.G411S	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	122349395	12A2p6	cell line	sgMsh2	122349395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	58	46	16	0.347826087	exonic	Shf	nonsynonymous SNV	"Shf:NM_001013829:exon6:c.A675T:p.E225D,Shf:NM_001374011:exon7:c.A1410T:p.E470D"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	5.73E-05	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	122799964	12A2p6	cell line	sgMsh2	122799964	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.214	107	228	53	0.23245614	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon6:c.T857C:p.V286A,Sqor:NM_021507:exon6:c.T857C:p.V286A"	2qE5	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	125377880	12A2p6	cell line	sgMsh2	125377880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	148	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon17:c.T2026C:p.L676L	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	AAC	synonymous	NA	NA	NA	NA
M6	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	74	7	1	0.142857143	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8505619	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	126459694	12A2p6	cell line	sgMsh2	126459694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	172	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon5:c.T245C:p.I82T,Atp8b4:NM_001359975:exon5:c.T245C:p.I82T"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999983	AAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M6	chr2	126462655	12A2p6	cell line	sgMsh2	126462655	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	224	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon4:c.T157G:p.L53V,Atp8b4:NM_001359975:exon4:c.T157G:p.L53V"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	126653571	12A2p6	cell line	sgMsh2	126653571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	147	31	2	0.064516129	exonic	Gabpb1	nonsynonymous SNV	"Gabpb1:NM_001271468:exon3:c.T260C:p.V87A,Gabpb1:NM_001271469:exon3:c.T260C:p.V87A,Gabpb1:NM_001271492:exon3:c.T260C:p.V87A,Gabpb1:NM_001355108:exon3:c.T260C:p.V87A,Gabpb1:NM_010249:exon3:c.T260C:p.V87A,Gabpb1:NM_207669:exon3:c.T260C:p.V87A,Gabpb1:NM_001271467:exon4:c.T260C:p.V87A,Gabpb1:NM_001271470:exon4:c.T260C:p.V87A,Gabpb1:NM_001355109:exon4:c.T260C:p.V87A"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999618	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	127086860	12A2p6	cell line	sgMsh2	127086860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	210	66	5	0.075757576	exonic	Blvra	synonymous SNV	Blvra:NM_026678:exon5:c.T267C:p.A89A	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M6	chr2	127226396	12A2p6	cell line	sgMsh2	127226396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	96	101	22	0.217821782	exonic	Snrnp200	synonymous SNV	Snrnp200:NM_177214:exon20:c.G2655A:p.Q885Q	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997349	AGC	synonymous	NA	NA	NA	NA
M6	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	203	110	4	0.036363636	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	123	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	TTA	synonymous	NA	NA	NA	NA
M6	chr2	127804943	12A2p6	cell line	sgMsh2	127804943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	118	29	6	0.206896552	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon21:c.T2416C:p.F806L,Bub1:NM_009772:exon21:c.T2413C:p.F805L"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999938	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	128629527	12A2p6	cell line	sgMsh2	128629527	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	67	134	7	0.052238806	exonic	Anapc1	nonsynonymous SNV	Anapc1:NM_008569:exon37:c.A4508G:p.N1503S	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9269792	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	128729258	12A2p6	cell line	sgMsh2	128729258	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	103	6	0	0	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon2:c.T131C:p.V44A	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9981656	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	165	9	0	0	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.251	224	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	130137453	12A2p6	cell line	sgMsh2	130137453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	0	0	NA	exonic	Tgm6	nonsynonymous SNV	Tgm6:NM_177726:exon4:c.G502A:p.V168M	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9996634	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	130600458	12A2p6	cell line	sgMsh2	130600458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	119	14	2	0.142857143	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon4:c.G308A:p.G103D,Ubox5:NM_080562:exon4:c.G308A:p.G103D,Ubox5:NM_001255993:exon5:c.G308A:p.G103D"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999942	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	130615776	12A2p6	cell line	sgMsh2	130615776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	108	39	14	0.358974359	exonic	Fastkd5	stopgain	"Fastkd5:NM_001377124:exon2:c.T758A:p.L253X,Fastkd5:NM_001377125:exon2:c.T758A:p.L253X,Fastkd5:NM_001146084:exon3:c.T758A:p.L253X,Fastkd5:NM_198176:exon3:c.T758A:p.L253X"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	130973419	12A2p6	cell line	sgMsh2	130973419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	111	38	2	0.052631579	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon14:c.A2254G:p.M752V	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.547205655	2	0.9992522	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	130994169	12A2p6	cell line	sgMsh2	130994169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	237	36	6	0.166666667	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon20:c.A3368T:p.K1123M	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.49E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	68	80	23	0.2875	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.934526	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr2	132058256	12A2p6	cell line	sgMsh2	132058256	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	235	41	11	0.268292683	exonic	Slc23a2	nonsynonymous SNV	"Slc23a2:NM_001355430:exon15:c.C1658T:p.T553I,Slc23a2:NM_018824:exon15:c.C1658T:p.T553I"	2qF2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.83E-08	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	177	38	4	0.105263158	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999987	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	138284030	12A2p6	cell line	sgMsh2	138284030	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	107	65	13	0.2	exonic	Btbd3	nonsynonymous SNV	"Btbd3:NM_145534:exon4:c.T1133C:p.L378P,Btbd3:NM_001025431:exon5:c.T926C:p.L309P"	2qF3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	139546415	12A2p6	cell line	sgMsh2	139546415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	87	0	0	NA	exonic	Sptlc3	nonsynonymous SNV	"Sptlc3:NM_001356507:exon3:c.A326G:p.D109G,Sptlc3:NM_175467:exon4:c.A326G:p.D109G"	2qF3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	140129235	12A2p6	cell line	sgMsh2	140129235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	206	84	14	0.166666667	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon11:c.A1985G:p.N662S	2qF3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999986	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	140167949	12A2p6	cell line	sgMsh2	140167949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	99	79	15	0.189873418	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon2:c.A466G:p.S156G	2qF3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	140240982	12A2p6	cell line	sgMsh2	140240982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	160	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon18:c.A1735G:p.S579G	2qF3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	143858116	12A2p6	cell line	sgMsh2	143858116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	314	0	0	NA	exonic	Bfsp1	nonsynonymous SNV	"Bfsp1:NM_001291061:exon2:c.T358C:p.Y120H,Bfsp1:NM_009751:exon2:c.T358C:p.Y120H"	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.15E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	143989053	12A2p6	cell line	sgMsh2	143989053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	105	206	32	0.155339806	exonic	Rrbp1	nonsynonymous SNV	"Rrbp1:NM_024281:exon2:c.A1193G:p.Q398R,Rrbp1:NM_133626:exon2:c.A1193G:p.Q398R"	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	CTG	nonsynonymous	TGGTTT	12	TGGTTTTGGTTT	NA
M6	chr2	144594154	12A2p6	cell line	sgMsh2	144594154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	74	14	0.189189189	exonic	Smim26	nonsynonymous SNV	Smim26:NM_001033297:exon1:c.T64C:p.W22R	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	145860441	12A2p6	cell line	sgMsh2	145860441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	100	78	14	0.179487179	exonic	Rin2	synonymous SNV	Rin2:NM_028724:exon9:c.A921G:p.K307K	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9933183	AAC	synonymous	NA	NA	NA	NA
M6	chr2	146412145	12A2p6	cell line	sgMsh2	146412145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	60	87	14	0.16091954	exonic	Ralgapa2	synonymous SNV	Ralgapa2:NM_001033348:exon18:c.T2353C:p.L785L	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9970216	AAC	synonymous	NA	NA	NA	NA
M6	chr2	146449255	12A2p6	cell line	sgMsh2	146449255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	93	216	62	0.287037037	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon8:c.T760C:p.F254L	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	146460717	12A2p6	cell line	sgMsh2	146460717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	153	80	12	0.15	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon4:c.A325G:p.I109V	2qG1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9982967	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	147029768	12A2p6	cell line	sgMsh2	147029768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	218	307	67	0.218241042	exonic	Xrn2	nonsynonymous SNV	"Xrn2:NM_001356402:exon11:c.T611C:p.V204A,Xrn2:NM_001356403:exon12:c.T416C:p.V139A,Xrn2:NM_011917:exon12:c.T1109C:p.V370A"	2qG2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	148688061	12A2p6	cell line	sgMsh2	148688061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	175	50	10	0.2	exonic	Gzf1	nonsynonymous SNV	"Gzf1:NM_001355689:exon4:c.T1511C:p.L504S,Gzf1:NM_028986:exon4:c.T1511C:p.L504S"	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	150324034	12A2p6	cell line	sgMsh2	150324034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	155	8	3	0.375	exonic	Gm10130	nonsynonymous SNV	Gm10130:NM_001374676:exon3:c.T137C:p.V46A	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	150587016	12A2p6	cell line	sgMsh2	150587016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	88	43	11	0.255813953	exonic	Apmap	nonsynonymous SNV	"Apmap:NM_027977:exon6:c.T686C:p.V229A,Apmap:NM_001356491:exon7:c.T458C:p.V153A,Apmap:NM_001356492:exon7:c.T101C:p.V34A"	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	150637979	12A2p6	cell line	sgMsh2	150637979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	106	21	5	0.238095238	exonic	Acss1	synonymous SNV	Acss1:NM_080575:exon5:c.T807C:p.P269P	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9993183	CAG	synonymous	NA	NA	NA	NA
M6	chr2	150667960	12A2p6	cell line	sgMsh2	150667960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	37	19	8	0.421052632	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon1:c.T238C:p.Y80H	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9449569	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	150963359	12A2p6	cell line	sgMsh2	150963359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	67	28	4	0.142857143	exonic	Ninl	nonsynonymous SNV	Ninl:NM_207204:exon10:c.A1303G:p.I435V	2qG3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	ATT	nonsynonymous	TTTTC	10	TTTTCTTTTC	NA
M6	chr2	153000138	12A2p6	cell line	sgMsh2	153000138	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	142	0	0	NA	exonic	Ttll9	nonsynonymous SNV	"Ttll9:NM_001355717:exon10:c.T725A:p.L242Q,Ttll9:NM_001355719:exon11:c.T725A:p.L242Q,Ttll9:NM_001083618:exon12:c.T911A:p.L304Q,Ttll9:NM_001355720:exon12:c.T629A:p.L210Q,Ttll9:NM_029064:exon12:c.T911A:p.L304Q"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999873	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	153194353	12A2p6	cell line	sgMsh2	153194353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	93	64	8	0.125	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon10:c.T1034C:p.L345P	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9863609	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	153261424	12A2p6	cell line	sgMsh2	153261424	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	123	34	7	0.205882353	exonic	Pofut1	nonsynonymous SNV	Pofut1:NM_080463:exon6:c.A977T:p.Q326L	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	153470739	12A2p6	cell line	sgMsh2	153470739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	117	0	0	NA	exonic	Nol4l	synonymous SNV	Nol4l:NM_001134300:exon4:c.C648T:p.T216T	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	AGG	synonymous	NA	NA	NA	NA
M6	chr2	153856217	12A2p6	cell line	sgMsh2	153856217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	112	0	0	NA	exonic	Sun5	nonsynonymous SNV	"Sun5:NM_029599:exon12:c.T1042C:p.S348P,Sun5:NM_001305048:exon13:c.T1117C:p.S373P"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	153932715	12A2p6	cell line	sgMsh2	153932715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	148	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon16:c.T1400C:p.V467A,Bpifb3:NM_194357:exon16:c.T1400C:p.V467A"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	154009883	12A2p6	cell line	sgMsh2	154009883	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	177	0	0	NA	exonic	Bpifa2	nonsynonymous SNV	Bpifa2:NM_008953:exon3:c.A238C:p.S80R	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999991	AAG	nonsynonymous	A	5	AAAAA	NA
M6	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Vardict	2	0.051	101	9	0	0	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.999951	GCT	synonymous	NA	NA	NA	NA
M6	chr2	154521212	12A2p6	cell line	sgMsh2	154521212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	187	60	10	0.166666667	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_001285446:exon7:c.T357C:p.A119A,Cbfa2t2:NM_009823:exon7:c.T1008C:p.A336A,Cbfa2t2:NM_172860:exon7:c.T1008C:p.A336A"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CTG	synonymous	NA	NA	NA	NA
M6	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	118	149	7	0.046979866	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.999888	ATA	synonymous	NA	NA	NA	NA
M6	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	44	35	2	0.057142857	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.5171592	GTT	synonymous	NA	NA	NA	NA
M6	chr2	155632414	12A2p6	cell line	sgMsh2	155632414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	52	0	0	NA	exonic	Myh7b	nonsynonymous SNV	Myh7b:NM_001085378:exon36:c.G5048A:p.R1683H	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9226052	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	155979285	12A2p6	cell line	sgMsh2	155979285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	81	37	9	0.243243243	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon19:c.A2791G:p.S931G,Cep250:NM_001130000:exon19:c.A2794G:p.S932G,Cep250:NM_008383:exon20:c.A2731G:p.S911G,Cep250:NM_177217:exon20:c.A2731G:p.S911G"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	155986018	12A2p6	cell line	sgMsh2	155986018	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	81	37	5	0.135135135	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon24:c.A3548T:p.E1183V,Cep250:NM_001130000:exon24:c.A3551T:p.E1184V,Cep250:NM_008383:exon25:c.A3488T:p.E1163V,Cep250:NM_177217:exon25:c.A3488T:p.E1163V"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr2	156096428	12A2p6	cell line	sgMsh2	156096428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	33	5	0.151515152	exonic	Rbm12	nonsynonymous SNV	"Rbm12:NM_029397:exon3:c.A1923G:p.I641M,Rbm12:NM_170598:exon3:c.A1923G:p.I641M"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	143	136	8	0.058823529	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.482828519	2	0.9931777	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	156144569	12A2p6	cell line	sgMsh2	156144569	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	50	176	34	0.193181818	exonic	Romo1	synonymous SNV	"Romo1:NM_025946:exon1:c.C111T:p.F37F,Romo1:NM_001164216:exon2:c.C111T:p.F37F,Romo1:NM_001164217:exon2:c.C111T:p.F37F"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9918327	TCG	synonymous	NA	NA	NA	NA
M6	chr2	156748402	12A2p6	cell line	sgMsh2	156748402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	93	63	8	0.126984127	exonic	Dlgap4	nonsynonymous SNV	"Dlgap4:NM_001042487:exon3:c.A464G:p.Q155R,Dlgap4:NM_001277187:exon8:c.A2030G:p.Q677R,Dlgap4:NM_146128:exon9:c.A2081G:p.Q694R"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	387	66	3	0.045454545	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1	TAT	synonymous	NA	NA	NA	NA
M6	chr2	157169951	12A2p6	cell line	sgMsh2	157169951	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	142	45	16	0.355555556	exonic	Rbl1	nonsynonymous SNV	Rbl1:NM_011249:exon15:c.A2083T:p.I695F	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999873	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr2	157295373	12A2p6	cell line	sgMsh2	157295373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	169	233	40	0.17167382	exonic	Rpn2	nonsynonymous SNV	"Rpn2:NM_001355163:exon6:c.A675C:p.E225D,Rpn2:NM_001355164:exon6:c.A666C:p.E222D,Rpn2:NM_001355165:exon6:c.A21C:p.E7D,Rpn2:NM_019642:exon6:c.A675C:p.E225D"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9704193	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	165	36	4	0.111111111	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	1.65E-08	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M6	chr2	158058754	12A2p6	cell line	sgMsh2	158058754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	94	40	10	0.25	exonic	Rprd1b	nonsynonymous SNV	"Rprd1b:NM_001291136:exon5:c.A371G:p.Q124R,Rprd1b:NM_001291134:exon6:c.A758G:p.Q253R,Rprd1b:NM_001291135:exon6:c.A758G:p.Q253R,Rprd1b:NM_027434:exon6:c.A755G:p.Q252R"	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.638406598	2	0.9650737	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	158120220	12A2p6	cell line	sgMsh2	158120220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	299	16	0.053511706	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon11:c.A1678G:p.I560V	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9978087	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	83	145	2	0.013793103	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9875748	GCG	synonymous	NA	NA	NA	NA
M6	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	53	3	1	0.333333333	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9954785	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr2	160715046	12A2p6	cell line	sgMsh2	160715046	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.251	73	219	0	0	exonic	Top1	frameshift insertion	Top1:NM_009408:exon16:c.1646dupT:p.K551fs*0	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6	chr2	160753658	12A2p6	cell line	sgMsh2	160753658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	77	77	13	0.168831169	exonic	Plcg1	nonsynonymous SNV	Plcg1:NM_021280:exon16:c.T1525C:p.Y509H	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990705	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	219	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9994203	AGC	synonymous	NA	NA	NA	NA
M6	chr2	160895539	12A2p6	cell line	sgMsh2	160895539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	91	11	2	0.181818182	exonic	Lpin3	nonsynonymous SNV	"Lpin3:NM_001199118:exon4:c.A505G:p.T169A,Lpin3:NM_022883:exon4:c.A505G:p.T169A"	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9993557	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	235	56	5	0.089285714	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M6	chr2	162253765	12A2p6	cell line	sgMsh2	162253765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	80	0	0	NA	exonic	Ptprt	synonymous SNV	"Ptprt:NM_001291149:exon5:c.A684G:p.K228K,Ptprt:NM_001291150:exon5:c.A684G:p.K228K,Ptprt:NM_001291151:exon5:c.A684G:p.K228K,Ptprt:NM_021464:exon5:c.A684G:p.K228K"	2qH2	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9954565	GTT	synonymous	NA	NA	NA	NA
M6	chr2	163376333	12A2p6	cell line	sgMsh2	163376333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	41	0	0	NA	exonic	Jph2	nonsynonymous SNV	"Jph2:NM_021566:exon2:c.A422G:p.Y141C,Jph2:NM_001205076:exon3:c.A422G:p.Y141C"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.009936071	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	163376334	12A2p6	cell line	sgMsh2	163376334	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	41	0	0	NA	exonic	Jph2	nonsynonymous SNV	"Jph2:NM_021566:exon2:c.T421C:p.Y141H,Jph2:NM_001205076:exon3:c.T421C:p.Y141H"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.5728332	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	164025647	12A2p6	cell line	sgMsh2	164025647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	90	0	0	NA	exonic	Pabpc1l	nonsynonymous SNV	Pabpc1l:NM_001114079:exon1:c.A167G:p.Y56C	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9995054	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	164404506	12A2p6	cell line	sgMsh2	164404506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	66	1	1	1	exonic	Rbpjl	nonsynonymous SNV	Rbpjl:NM_009036:exon2:c.A70C:p.S24R	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	164820502	12A2p6	cell line	sgMsh2	164820502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	130	37	6	0.162162162	exonic	Zswim3	nonsynonymous SNV	Zswim3:NM_178375:exon2:c.C901T:p.L301F	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	TCT	nonsynonymous	CTCTC	10	CTCTCCTCTC	NA
M6	chr2	164827437	12A2p6	cell line	sgMsh2	164827437	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	46	0	0	NA	exonic	Spata25	nonsynonymous SNV	Spata25:NM_029370:exon2:c.T653C:p.V218A	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.009864123	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	164889684	12A2p6	cell line	sgMsh2	164889684	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	140	37	8	0.216216216	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon13:c.T1607A:p.F536Y,Pcif1:NM_001374127:exon14:c.T1556A:p.F519Y,Pcif1:NM_001374128:exon14:c.T1556A:p.F519Y,Pcif1:NM_146129:exon14:c.T1556A:p.F519Y"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr2	164973752	12A2p6	cell line	sgMsh2	164973752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	157	0	0	NA	exonic	Slc12a5	nonsynonymous SNV	"Slc12a5:NM_001355480:exon2:c.T187C:p.Y63H,Slc12a5:NM_001355481:exon2:c.T187C:p.Y63H,Slc12a5:NM_020333:exon2:c.T118C:p.Y40H"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	165314768	12A2p6	cell line	sgMsh2	165314768	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	58	58	8	0.137931034	exonic	Elmo2	nonsynonymous SNV	"Elmo2:NM_001302754:exon4:c.T206G:p.I69S,Elmo2:NM_001302752:exon5:c.T206G:p.I69S,Elmo2:NM_080287:exon5:c.T206G:p.I69S,Elmo2:NM_207706:exon5:c.T206G:p.I69S"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9967463	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	165353130	12A2p6	cell line	sgMsh2	165353130	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	41	0	0	NA	exonic	Zfp663	nonsynonymous SNV	"Zfp663:NM_001379475:exon5:c.A1168T:p.T390S,Zfp663:NM_001379476:exon5:c.A1060T:p.T354S,Zfp663:NM_001005425:exon6:c.A1168T:p.T390S,Zfp663:NM_001379474:exon6:c.A1168T:p.T390S"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.009936071	GTT	nonsynonymous	G	5	GGGGG	NA
M6	chr2	165380247	12A2p6	cell line	sgMsh2	165380247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	112	24	4	0.166666667	exonic	Zfp334	synonymous SNV	Zfp334:NM_178411:exon5:c.A1875G:p.K625K	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	GTT	synonymous	NA	NA	NA	NA
M6	chr2	165685599	12A2p6	cell line	sgMsh2	165685599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	86	106	27	0.254716981	exonic	Eya2	nonsynonymous SNV	"Eya2:NM_001271962:exon4:c.A188G:p.Y63C,Eya2:NM_001271963:exon4:c.A188G:p.Y63C,Eya2:NM_010165:exon4:c.A188G:p.Y63C"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr2	166077539	12A2p6	cell line	sgMsh2	166077539	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	102	1	0	0	exonic	Sulf2	frameshift deletion	"Sulf2:NM_001252578:exon18:c.2488delC:p.R830Gfs*28,Sulf2:NM_001252579:exon18:c.2587delC:p.R863Gfs*28,Sulf2:NM_028072:exon18:c.2488delC:p.R830Gfs*28,Sulf2:NM_001355619:exon19:c.2488delC:p.R830Gfs*28"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M6	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	87	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9921933	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	166863660	12A2p6	cell line	sgMsh2	166863660	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	94	39	6	0.153846154	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon20:c.G2810A:p.R937H	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996975	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	230	285	79	0.277192982	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.89E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	168536341	12A2p6	cell line	sgMsh2	168536341	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	113	3	3	1	exonic	Nfatc2	nonsynonymous SNV	"Nfatc2:NM_001291171:exon3:c.G53T:p.R18M,Nfatc2:NM_001291173:exon3:c.G53T:p.R18M,Nfatc2:NM_001291176:exon3:c.G53T:p.R18M,Nfatc2:NM_001291178:exon3:c.G53T:p.R18M,Nfatc2:NM_001037177:exon4:c.G1403T:p.R468M,Nfatc2:NM_001037178:exon4:c.G740T:p.R247M,Nfatc2:NM_001136073:exon4:c.G1403T:p.R468M,Nfatc2:NM_001291168:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291169:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291170:exon4:c.G740T:p.R247M,Nfatc2:NM_001291172:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291174:exon4:c.G740T:p.R247M,Nfatc2:NM_001291175:exon4:c.G740T:p.R247M,Nfatc2:NM_001291177:exon4:c.G740T:p.R247M,Nfatc2:NM_001291179:exon4:c.G740T:p.R247M,Nfatc2:NM_010899:exon4:c.G1403T:p.R468M"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.702783733	2	0.873028	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	168754816	12A2p6	cell line	sgMsh2	168754816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	88	0	0	NA	exonic	Sall4	nonsynonymous SNV	Sall4:NM_175303:exon2:c.G2103T:p.E701D	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	168756149	12A2p6	cell line	sgMsh2	168756149	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	109	0	0	NA	exonic	Sall4	nonsynonymous SNV	"Sall4:NM_175303:exon2:c.G770T:p.S257I,Sall4:NM_201395:exon2:c.G770T:p.S257I"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr2	168925849	12A2p6	cell line	sgMsh2	168925849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	90	71	13	0.183098592	exonic	Zfp64	synonymous SNV	Zfp64:NM_009564:exon6:c.T1842C:p.L614L	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	TAA	synonymous	NA	NA	NA	NA
M6	chr2	169884258	12A2p6	cell line	sgMsh2	169884258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	90	16	0	0	exonic	Tshz2	nonsynonymous SNV	"Tshz2:NM_001363022:exon2:c.A773G:p.K258R,Tshz2:NM_001363023:exon2:c.A773G:p.K258R,Tshz2:NM_080455:exon2:c.A773G:p.K258R,Tshz2:NM_177659:exon2:c.A773G:p.K258R"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999606	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	170496688	12A2p6	cell line	sgMsh2	170496688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	45	0	0	NA	exonic	Cyp24a1	synonymous SNV	Cyp24a1:NM_009996:exon1:c.A87G:p.T29T	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	ATG	synonymous	NA	NA	NA	NA
M6	chr2	172042266	12A2p6	cell line	sgMsh2	172042266	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	27	0	0	NA	exonic	Cbln4	synonymous SNV	Cbln4:NM_175631:exon1:c.A33C:p.V11V	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9753155	GTA	synonymous	NA	NA	NA	NA
M6	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr2	172445350	12A2p6	cell line	sgMsh2	172445350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	258	150	29	0.193333333	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon3:c.T188C:p.I63T	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9998745	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr2	172468763	12A2p6	cell line	sgMsh2	172468763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	87	92	14	0.152173913	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon9:c.T913C:p.Y305H	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	172982025	12A2p6	cell line	sgMsh2	172982025	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	212	0	0	NA	exonic	Spo11	frameshift deletion	Spo11:NM_012046:exon2:c.178delA:p.S61Afs*11	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr2	173578048	12A2p6	cell line	sgMsh2	173578048	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	47	0	0	NA	exonic	Ankrd60	synonymous SNV	"Ankrd60:NM_001199955:exon1:c.G27A:p.E9E,Ankrd60:NM_027303:exon1:c.G27A:p.E9E"	2qH3	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.08746648	GCT	synonymous	NA	NA	NA	NA
M6	chr2	174345240	12A2p6	cell line	sgMsh2	174345240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	241	1452	305	0.210055096	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon7:c.T2773C:p.C925R,Gnas:NM_001077510:exon7:c.T556C:p.C186R,Gnas:NM_001364030:exon7:c.T553C:p.C185R,Gnas:NM_010309:exon8:c.T2815C:p.C939R,Gnas:NM_201616:exon8:c.T598C:p.C200R,Gnas:NM_001310083:exon9:c.T598C:p.C200R"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.93E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr2	174648180	12A2p6	cell line	sgMsh2	174648180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	152	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon2:c.C3739T:p.R1247C	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	106	30	4	0.133333333	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	CTA	synonymous	NA	NA	NA	NA
M6	chr2	178374934	12A2p6	cell line	sgMsh2	178374934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	201	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon22:c.C1874A:p.P625H	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9845638	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr2	178420663	12A2p6	cell line	sgMsh2	178420663	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	125	0	0	NA	exonic	Fam217b	nonsynonymous SNV	Fam217b:NM_001081289:exon4:c.A419G:p.E140G	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr2	178460063	12A2p6	cell line	sgMsh2	178460063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	218	0	0	NA	exonic	Cdh26	synonymous SNV	"Cdh26:NM_001291189:exon5:c.T474C:p.P158P,Cdh26:NM_198656:exon5:c.T474C:p.P158P"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.999995	CTA	synonymous	T	5	TTTTT	NA
M6	chr2	178460775	12A2p6	cell line	sgMsh2	178460775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	127	0	0	NA	exonic	Cdh26	nonsynonymous SNV	"Cdh26:NM_001291189:exon6:c.A734G:p.N245S,Cdh26:NM_198656:exon6:c.A734G:p.N245S"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	178477681	12A2p6	cell line	sgMsh2	178477681	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	161	0	0	NA	exonic	Cdh26	synonymous SNV	Cdh26:NM_198656:exon13:c.T1992C:p.T664T	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	CTT	synonymous	NA	NA	NA	NA
M6	chr2	180052506	12A2p6	cell line	sgMsh2	180052506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	79	15	4	0.266666667	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon2:c.T112C:p.Y38H	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9991854	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	180058120	12A2p6	cell line	sgMsh2	180058120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	128	9	3	0.333333333	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon7:c.T772C:p.Y258H	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	180145179	12A2p6	cell line	sgMsh2	180145179	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	135	104	16	0.153846154	exonic	Osbpl2	nonsynonymous SNV	Osbpl2:NM_144500:exon6:c.T484G:p.L162V	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	180202253	12A2p6	cell line	sgMsh2	180202253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	119	178	44	0.247191011	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon8:c.G1114A:p.D372N	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9998508	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	180258378	12A2p6	cell line	sgMsh2	180258378	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	329	567	410	0.723104056	exonic	Rps21	synonymous SNV	"Rps21:NM_001355516:exon5:c.G243A:p.K81K,Rps21:NM_001355517:exon6:c.G243A:p.K81K,Rps21:NM_001355518:exon6:c.G243A:p.K81K,Rps21:NM_001355520:exon6:c.G243A:p.K81K,Rps21:NM_001355521:exon6:c.G243A:p.K81K,Rps21:NM_025587:exon6:c.G243A:p.K81K"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-09	GGA	synonymous	NA	NA	NA	NA
M6	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Vardict	2	0.05	106	142	5	0.035211268	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999783	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	74	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8505619	GCT	synonymous	NA	NA	NA	NA
M6	chr2	180911048	12A2p6	cell line	sgMsh2	180911048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	139	162	27	0.166666667	exonic	Ythdf1	nonsynonymous SNV	Ythdf1:NM_173761:exon4:c.A1292G:p.K431R	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999845	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr2	181000460	12A2p6	cell line	sgMsh2	181000460	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	89	11	4	0.363636364	exonic	Col20a1	synonymous SNV	Col20a1:NM_028518:exon16:c.C2163A:p.G721G	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	GCA	synonymous	NA	NA	NA	NA
M6	chr2	181013423	12A2p6	cell line	sgMsh2	181013423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	81	26	11	0.423076923	exonic	Col20a1	nonsynonymous SNV	Col20a1:NM_028518:exon29:c.A3472T:p.T1158S	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr2	181081450	12A2p6	cell line	sgMsh2	181081450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	62	0	0	NA	exonic	Kcnq2	nonsynonymous SNV	"Kcnq2:NM_001302888:exon16:c.G2159T:p.R720L,Kcnq2:NM_010611:exon17:c.G2216T:p.R739L"	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr2	181233173	12A2p6	cell line	sgMsh2	181233173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	95	11	3	0.272727273	exonic	Helz2	nonsynonymous SNV	Helz2:NM_183162:exon9:c.A5527G:p.T1843A	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.0930253	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr2	181670370	12A2p6	cell line	sgMsh2	181670370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	100	1	0	0	exonic	Sox18	nonsynonymous SNV	Sox18:NM_009236:exon2:c.T967C:p.Y323H	2qH4	chr2-97628777-181807525	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	5242704	12A2p6	cell line	sgMsh2	5242704	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	161	20	3	0.15	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.C989A:p.P330H,Zfhx4:NM_030708:exon2:c.C989A:p.P330H"	3qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	185	26	2	0.076923077	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	5560883	12A2p6	cell line	sgMsh2	5560883	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	110	210	6	0.028571429	exonic	Pex2	nonsynonymous SNV	"Pex2:NM_001267714:exon4:c.A865G:p.S289G,Pex2:NM_001267715:exon4:c.A865G:p.S289G,Pex2:NM_001163301:exon5:c.A865G:p.S289G,Pex2:NM_001163302:exon5:c.A865G:p.S289G,Pex2:NM_001163305:exon5:c.A865G:p.S289G,Pex2:NM_001163306:exon5:c.A865G:p.S289G,Pex2:NM_008994:exon6:c.A865G:p.S289G"	3qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	179	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.18E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr3	15543244	12A2p6	cell line	sgMsh2	15543244	G	A	SNV	Mutect2;Vardict	2	0.037	237	0	0	NA	exonic	Sirpb1b	nonsynonymous SNV	Sirpb1b:NM_001173460:exon3:c.C440T:p.S147F	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998095	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	114	76	1	0.013157895	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999931	AAT	nonsynonymous	A	5	AAAAA	NA
M6	chr3	20266459	12A2p6	cell line	sgMsh2	20266459	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	214	0	0	NA	exonic	Cpb1	nonsynonymous SNV	Cpb1:NM_029706:exon4:c.G331A:p.G111R	3qA2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999996	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr3	23846609	12A2p6	cell line	sgMsh2	23846609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	115	0	0	NA	exonic	Naaladl2	nonsynonymous SNV	Naaladl2:NM_001326288:exon13:c.T2056C:p.F686L	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	25436635	12A2p6	cell line	sgMsh2	25436635	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	105	0	0	NA	exonic	Nlgn1	frameshift deletion	"Nlgn1:NM_001163387:exon5:c.840delT:p.Q281Nfs*3,Nlgn1:NM_001357096:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357097:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357095:exon6:c.927delT:p.Q310Nfs*3,Nlgn1:NM_138666:exon7:c.927delT:p.Q310Nfs*3"	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr3	27239540	12A2p6	cell line	sgMsh2	27239540	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	115	60	11	0.183333333	exonic	Nceh1	nonsynonymous SNV	Nceh1:NM_178772:exon4:c.T446G:p.L149R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	27372502	12A2p6	cell line	sgMsh2	27372502	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	80	0	0	NA	exonic	Ghsr	synonymous SNV	Ghsr:NM_177330:exon2:c.A706C:p.R236R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GAG	synonymous	NA	NA	NA	NA
M6	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	271	16	1	0.0625	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.53E-09	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr3	31118554	12A2p6	cell line	sgMsh2	31118554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	63	175	38	0.217142857	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon7:c.A1831G:p.M611V,Skil:NM_011386:exon7:c.A1969G:p.M657V,Skil:NM_001271772:exon9:c.A1591G:p.M531V"	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	1	0.6359242	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M6	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	153	121	3	0.024793388	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	7.95E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	34651199	12A2p6	cell line	sgMsh2	34651199	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	23	0	0	NA	exonic	Sox2	nonsynonymous SNV	Sox2:NM_011443:exon1:c.C784A:p.H262N	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9680764	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr3	36973333	12A2p6	cell line	sgMsh2	36973333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	107	14	1	0.071428571	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon43:c.A6865G:p.R2289G	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9884298	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M6	chr3	38454366	12A2p6	cell line	sgMsh2	38454366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	188	407	50	0.122850123	exonic	Ankrd50	nonsynonymous SNV	Ankrd50:NM_001373894:exon4:c.C3962T:p.T1321M	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr3	38483027	12A2p6	cell line	sgMsh2	38483027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	102	194	35	0.180412371	exonic	Ankrd50	nonsynonymous SNV	"Ankrd50:NM_001167883:exon2:c.A176G:p.N59S,Ankrd50:NM_001373894:exon2:c.A176G:p.N59S"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr3	38887230	12A2p6	cell line	sgMsh2	38887230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	69	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon1:c.T271C:p.Y91H	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9864371	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	38891294	12A2p6	cell line	sgMsh2	38891294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	190	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon1:c.T4335C:p.H1445H	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	ATG	synonymous	NA	NA	NA	NA
M6	chr3	38979852	12A2p6	cell line	sgMsh2	38979852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	171	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon9:c.C7652T:p.T2551I	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr3	45381123	12A2p6	cell line	sgMsh2	45381123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	51	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098171:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098172:exon1:c.A1871G:p.N624S,Pcdh10:NM_011043:exon1:c.A1871G:p.N624S"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8609755	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	45381496	12A2p6	cell line	sgMsh2	45381496	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	81	0	0	NA	exonic	Pcdh10	synonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2244T:p.I748I,Pcdh10:NM_001098171:exon1:c.C2244T:p.I748I,Pcdh10:NM_001098172:exon1:c.C2244T:p.I748I,Pcdh10:NM_011043:exon1:c.C2244T:p.I748I"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9754188	TCT	synonymous	NA	NA	NA	NA
M6	chr3	45381524	12A2p6	cell line	sgMsh2	45381524	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	81	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098171:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098172:exon1:c.C2272A:p.L758I,Pcdh10:NM_011043:exon1:c.C2272A:p.L758I"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	45381753	12A2p6	cell line	sgMsh2	45381753	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	130	0	0	NA	exonic	Pcdh10	frameshift deletion	"Pcdh10:NM_001098170:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098171:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098172:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_011043:exon1:c.2501delT:p.L834Rfs*3"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTG	frameshift	GACC	8	GACCGACC	-1
M6	chr3	45392730	12A2p6	cell line	sgMsh2	45392730	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	96	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098171:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098172:exon4:c.T2959C:p.F987L"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997349	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	49744983	12A2p6	cell line	sgMsh2	49744983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	162	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.T3029C:p.V1010A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999836	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	49754760	12A2p6	cell line	sgMsh2	49754760	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	198	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.T2105A:p.I702K	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	2.74E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	50427776	12A2p6	cell line	sgMsh2	50427776	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	149	51	9	0.176470588	exonic	Slc7a11	nonsynonymous SNV	Slc7a11:NM_011990:exon4:c.C521A:p.T174N	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999086	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	51493550	12A2p6	cell line	sgMsh2	51493550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	251	58	12	0.206896552	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.T444C:p.N148N	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-08	ATA	synonymous	AAAT	8	AAATAAAT	NA
M6	chr3	51521321	12A2p6	cell line	sgMsh2	51521321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	51	19	7	0.368421053	exonic	Setd7	nonsynonymous SNV	Setd7:NM_080793:exon8:c.A1087G:p.T363A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	53043350	12A2p6	cell line	sgMsh2	53043350	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	181	4	2	0.5	exonic	Lhfp	nonsynonymous SNV	Lhfp:NM_175386:exon2:c.T44G:p.L15R	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	CTT	nonsynonymous	GCTTT	10	GCTTTGCTTT	NA
M6	chr3	54794474	12A2p6	cell line	sgMsh2	54794474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	150	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.A1135G:p.M379V	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999274	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	55121731	12A2p6	cell line	sgMsh2	55121731	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	137	40	5	0.125	exonic	Spg20	synonymous SNV	"Spg20:NM_001144987:exon3:c.G942A:p.E314E,Spg20:NM_001144988:exon3:c.G942A:p.E314E,Spg20:NM_144895:exon3:c.G942A:p.E314E"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	AGC	synonymous	NA	NA	NA	NA
M6	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	176	76	1	0.013157895	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999808	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	73	16	3	0.1875	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.7708541	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M6	chr3	55968022	12A2p6	cell line	sgMsh2	55968022	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	195	19	0	0	exonic	Nbea	synonymous SNV	Nbea:NM_030595:exon31:c.T5226C:p.A1742A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9998298	CAG	synonymous	NA	NA	NA	NA
M6	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	191	17	2	0.117647059	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999995	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	85	225	3	0.013333333	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr3	59217615	12A2p6	cell line	sgMsh2	59217615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	2	0	0	exonic	P2ry12	nonsynonymous SNV	"P2ry12:NM_001357007:exon3:c.T638C:p.V213A,P2ry12:NM_001357010:exon4:c.T638C:p.V213A,P2ry12:NM_027571:exon4:c.T638C:p.V213A,P2ry12:NM_001357008:exon5:c.T638C:p.V213A"	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	59319866	12A2p6	cell line	sgMsh2	59319866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	205	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon7:c.A6385G:p.T2129A	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	59319877	12A2p6	cell line	sgMsh2	59319877	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	194	0	0	NA	exonic	Igsf10	frameshift deletion	Igsf10:NM_001162884:exon7:c.6374delA:p.K2125Rfs*49	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	184	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9998561	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	59331736	12A2p6	cell line	sgMsh2	59331736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	160	0	0	NA	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.A1023G:p.L341L	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	GTA	synonymous	NA	NA	NA	NA
M6	chr3	60039863	12A2p6	cell line	sgMsh2	60039863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	261	0	0	NA	exonic	Aadac	nonsynonymous SNV	Aadac:NM_023383:exon5:c.A981G:p.I327M	3qD	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.89E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	62340037	12A2p6	cell line	sgMsh2	62340037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	54	3	0	0	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.T541C:p.S181P	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr3	63697910	12A2p6	cell line	sgMsh2	63697910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	259	45	9	0.2	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A4572G:p.S1524S,Plch1:NM_001370984:exon24:c.A4548G:p.S1516S"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	6.58E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr3	63698648	12A2p6	cell line	sgMsh2	63698648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	171	48	8	0.166666667	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A3834G:p.P1278P,Plch1:NM_001370984:exon24:c.A3810G:p.P1270P"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9989938	TTG	synonymous	NA	NA	NA	NA
M6	chr3	64503772	12A2p6	cell line	sgMsh2	64503772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	598	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon2:c.T1113C:p.H371H,Vmn2r5:NM_001385126:exon3:c.T1374C:p.H458H"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	1	TAT	synonymous	NA	NA	NA	NA
M6	chr3	66157922	12A2p6	cell line	sgMsh2	66157922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	141	0	0	NA	exonic	Veph1	nonsynonymous SNV	Veph1:NM_145820:exon9:c.T1723C:p.C575R	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9985438	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	67461382	12A2p6	cell line	sgMsh2	67461382	A	G	SNV	Mutect2;Vardict	2	0.04	138	140	7	0.05	exonic	Lxn	synonymous SNV	Lxn:NM_016753:exon3:c.T300C:p.D100D	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.12E-08	CAT	synonymous	NA	NA	NA	NA
M6	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	274	44	2	0.045454545	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	CTG	synonymous	NA	NA	NA	NA
M6	chr3	68916152	12A2p6	cell line	sgMsh2	68916152	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.218	106	26	0	0	exonic	Ift80	frameshift insertion	Ift80:NM_026641:exon16:c.1775dupT:p.H593Pfs*1	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GGA	frameshift	NA	NA	NA	1
M6	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	98	41	14	0.341463415	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997677	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	68950427	12A2p6	cell line	sgMsh2	68950427	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	148	55	13	0.236363636	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon9:c.T884A:p.F295Y	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9993211	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr3	69006113	12A2p6	cell line	sgMsh2	69006113	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	42	86	18	0.209302326	exonic	Smc4	synonymous SNV	Smc4:NM_133786:exon2:c.C33T:p.A11A	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9906932	CCT	synonymous	CTGC	9	CTGCCTGCC	NA
M6	chr3	69575824	12A2p6	cell line	sgMsh2	69575824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	14	1	0.071428571	exonic	B3galnt1	nonsynonymous SNV	B3galnt1:NM_020026:exon3:c.T103C:p.Y35H	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.665230404	2	0.947334	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	257	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	7.37E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	76536248	12A2p6	cell line	sgMsh2	76536248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	193	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon8:c.T899C:p.F300S,Fstl5:NM_178673:exon8:c.T899C:p.F300S"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	76659695	12A2p6	cell line	sgMsh2	76659695	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	127	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon14:c.T1645C:p.Y549H,Fstl5:NM_178673:exon14:c.T1645C:p.Y549H"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.999993	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	79481028	12A2p6	cell line	sgMsh2	79481028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	55	24	9	0.375	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon13:c.T2305C:p.C769R	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.7725973	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	79512558	12A2p6	cell line	sgMsh2	79512558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	232	32	7	0.21875	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.T410C:p.M137T	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	79886907	12A2p6	cell line	sgMsh2	79886907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	102	0	0	NA	exonic	Gask1b	synonymous SNV	Gask1b:NM_133187:exon1:c.T681C:p.A227A	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9776133	CTG	synonymous	NA	NA	NA	NA
M6	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	186	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.7435867	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	82009540	12A2p6	cell line	sgMsh2	82009540	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	123	0	0	NA	exonic	Asic5	synonymous SNV	Asic5:NM_021370:exon6:c.T936A:p.T312T	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.8928007	CTT	synonymous	NA	NA	NA	NA
M6	chr3	82359114	12A2p6	cell line	sgMsh2	82359114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	157	7	0	0	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon2:c.C65A:p.T22N,Map9:NM_001356457:exon2:c.C65A:p.T22N"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	256	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr3	84172848	12A2p6	cell line	sgMsh2	84172848	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	159	63	0	0	exonic	Trim2	nonsynonymous SNV	"Trim2:NM_001271725:exon9:c.C1865T:p.A622V,Trim2:NM_001271726:exon9:c.C1787T:p.A596V,Trim2:NM_001271727:exon9:c.C1787T:p.A596V,Trim2:NM_001271728:exon9:c.C1787T:p.A596V,Trim2:NM_030706:exon9:c.C1838T:p.A613V"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999988	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	188	44	1	0.022727273	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1.00E-09	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M6	chr3	86107262	12A2p6	cell line	sgMsh2	86107262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	109	369	81	0.219512195	exonic	Sh3d19	synonymous SNV	"Sh3d19:NM_001082414:exon14:c.A2010G:p.E670E,Sh3d19:NM_001374679:exon15:c.A2010G:p.E670E"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	AAT	synonymous	NA	NA	NA	NA
M6	chr3	86395233	12A2p6	cell line	sgMsh2	86395233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	176	36	5	0.138888889	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon35:c.T5599C:p.S1867P,Lrba:NM_001077688:exon35:c.T5599C:p.S1867P,Lrba:NM_030695:exon35:c.T5599C:p.S1867P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.99995	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	86641597	12A2p6	cell line	sgMsh2	86641597	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	169	55	14	0.254545455	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon45:c.C6893T:p.T2298I,Lrba:NM_001077688:exon45:c.C6893T:p.T2298I,Lrba:NM_030695:exon45:c.C6893T:p.T2298I"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr3	87389666	12A2p6	cell line	sgMsh2	87389666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	170	0	0	NA	exonic	Fcrl1	synonymous SNV	"Fcrl1:NM_001136236:exon7:c.A792G:p.A264A,Fcrl1:NM_001310545:exon8:c.A921G:p.A307A,Fcrl1:NM_178165:exon8:c.A921G:p.A307A,Fcrl1:NM_153090:exon9:c.A981G:p.A327A"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999998	CAG	synonymous	CAG	9	CAGCAGCAG	NA
M6	chr3	87814518	12A2p6	cell line	sgMsh2	87814518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	68	0	0	NA	exonic	Insrr	nonsynonymous SNV	Insrr:NM_011832:exon21:c.C3598A:p.Q1200K	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9977418	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr3	87913145	12A2p6	cell line	sgMsh2	87913145	T	-	Deletion	Strelka2;Vardict	2	0.1831	142	547	46	0.084095064	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.982287799	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M6	chr3	88159205	12A2p6	cell line	sgMsh2	88159205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	123	24	0.195121951	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310587:exon5:c.T480C:p.S160S,Mef2d:NM_001310593:exon5:c.T477C:p.S159S,Mef2d:NM_133665:exon5:c.T480C:p.S160S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GTA	synonymous	NA	NA	NA	NA
M6	chr3	88245865	12A2p6	cell line	sgMsh2	88245865	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	149	0	0	NA	exonic	Rhbg	nonsynonymous SNV	Rhbg:NM_021375:exon5:c.A781C:p.S261R	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	111	8	0	0	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9947385	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	88762296	12A2p6	cell line	sgMsh2	88762296	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	126	13	0	0	exonic	Syt11	nonsynonymous SNV	Syt11:NM_018804:exon2:c.A288G:p.I96M	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	0.7682595	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	89092053	12A2p6	cell line	sgMsh2	89092053	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	126	0	0	NA	exonic	Rusc1	nonsynonymous SNV	"Rusc1:NM_001083807:exon2:c.G421A:p.G141S,Rusc1:NM_028188:exon2:c.G421A:p.G141S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr3	89231181	12A2p6	cell line	sgMsh2	89231181	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	211	681	18	0.026431718	exonic	Muc1	stopgain	Muc1:NM_013605:exon2:c.C1329A:p.Y443X	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ACT	nonsynonymous	ACT	8	ACTACTAC	NA
M6	chr3	89344764	12A2p6	cell line	sgMsh2	89344764	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	65	91	1	0.010989011	exonic	Adam15	nonsynonymous SNV	"Adam15:NM_001037722:exon11:c.A1093C:p.S365R,Adam15:NM_009614:exon11:c.A1093C:p.S365R"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9585728	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	89735373	12A2p6	cell line	sgMsh2	89735373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	120	38	10	0.263157895	exonic	Adar	nonsynonymous SNV	"Adar:NM_001146296:exon2:c.T560C:p.L187P,Adar:NM_001357958:exon2:c.T677C:p.L226P,Adar:NM_019655:exon2:c.T560C:p.L187P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	89948174	12A2p6	cell line	sgMsh2	89948174	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	169	71	2	0.028169014	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon15:c.T1572A:p.N524K,Atp8b2:NM_001081182:exon16:c.T1515A:p.N505K"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.999999	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	90000921	12A2p6	cell line	sgMsh2	90000921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	123	137	14	0.102189781	exonic	Ubap2l	nonsynonymous SNV	"Ubap2l:NM_001357307:exon27:c.A3272G:p.N1091S,Ubap2l:NM_001165983:exon28:c.A3314G:p.N1105S,Ubap2l:NM_001165984:exon28:c.A3299G:p.N1100S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9995529	GTT	nonsynonymous	AGCTGT	12	AGCTGTAGCTGT	NA
M6	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	221	60	0	0	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999986	AGC	synonymous	NA	NA	NA	NA
M6	chr3	90609932	12A2p6	cell line	sgMsh2	90609932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	107	3	0	0	exonic	S100a5	nonsynonymous SNV	S100a5:NM_011312:exon2:c.T109G:p.L37V	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	92433547	12A2p6	cell line	sgMsh2	92433547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	182	0	0	NA	exonic	Sprr2k	nonsynonymous SNV	Sprr2k:NM_011477:exon2:c.A203G:p.K68R	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9992707	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	284	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	TAC	synonymous	NA	NA	NA	NA
M6	chr3	93202866	12A2p6	cell line	sgMsh2	93202866	T	G	SNV	Mutect2;Vardict	2	0.043	179	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon3:c.T2200G:p.S734A	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.32E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr3	93397005	12A2p6	cell line	sgMsh2	93397005	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	434	0	0	NA	exonic	Rptn	synonymous SNV	Rptn:NM_009100:exon3:c.C1644T:p.G548G	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	GCC	synonymous	NA	NA	NA	NA
M6	chr3	93443526	12A2p6	cell line	sgMsh2	93443526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	150	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A272G:p.Q91R	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9999049	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	94486556	12A2p6	cell line	sgMsh2	94486556	T	G	SNV	Mutect2;Vardict	2	0.081	50	0	0	NA	exonic	Celf3	synonymous SNV	"Celf3:NM_001379256:exon5:c.T291G:p.A97A,Celf3:NM_001289613:exon6:c.T519G:p.A173A,Celf3:NM_001357784:exon6:c.T519G:p.A173A,Celf3:NM_172434:exon6:c.T516G:p.A172A,Celf3:NM_001289616:exon7:c.T288G:p.A96A,Celf3:NM_001289620:exon7:c.T288G:p.A96A,Celf3:NM_001357785:exon7:c.T291G:p.A97A,Celf3:NM_001357786:exon7:c.T291G:p.A97A,Celf3:NM_001379249:exon7:c.T519G:p.A173A,Celf3:NM_001379250:exon7:c.T516G:p.A172A,Celf3:NM_001379251:exon7:c.T288G:p.A96A,Celf3:NM_001379252:exon7:c.T291G:p.A97A,Celf3:NM_001379253:exon7:c.T291G:p.A97A,Celf3:NM_001379254:exon7:c.T288G:p.A96A,Celf3:NM_001379255:exon7:c.T291G:p.A97A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	3	0.005954675	CTG	synonymous	NA	NA	NA	NA
M6	chr3	94486600	12A2p6	cell line	sgMsh2	94486600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	50	0	0	NA	exonic	Celf3	nonsynonymous SNV	"Celf3:NM_001379256:exon5:c.C335T:p.A112V,Celf3:NM_001289613:exon6:c.C563T:p.A188V,Celf3:NM_001357784:exon6:c.C563T:p.A188V,Celf3:NM_172434:exon6:c.C560T:p.A187V,Celf3:NM_001289616:exon7:c.C332T:p.A111V,Celf3:NM_001289620:exon7:c.C332T:p.A111V,Celf3:NM_001357785:exon7:c.C335T:p.A112V,Celf3:NM_001357786:exon7:c.C335T:p.A112V,Celf3:NM_001379249:exon7:c.C563T:p.A188V,Celf3:NM_001379250:exon7:c.C560T:p.A187V,Celf3:NM_001379251:exon7:c.C332T:p.A111V,Celf3:NM_001379252:exon7:c.C335T:p.A112V,Celf3:NM_001379253:exon7:c.C335T:p.A112V,Celf3:NM_001379254:exon7:c.C332T:p.A111V,Celf3:NM_001379255:exon7:c.C335T:p.A112V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9944928	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	283	126	6	0.047619048	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M6	chr3	94999049	12A2p6	cell line	sgMsh2	94999049	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	174	108	3	0.027777778	exonic	Pi4kb	nonsynonymous SNV	"Pi4kb:NM_001293716:exon7:c.C955T:p.R319C,Pi4kb:NM_175356:exon8:c.C1906T:p.R636C,Pi4kb:NM_001293715:exon9:c.C1951T:p.R651C"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	2.04E-08	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	137	232	68	0.293103448	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	95288332	12A2p6	cell line	sgMsh2	95288332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	123	408	79	0.193627451	exonic	Mindy1	nonsynonymous SNV	"Mindy1:NM_133858:exon2:c.A385G:p.I129V,Mindy1:NM_199475:exon2:c.A385G:p.I129V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.923288	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	95324761	12A2p6	cell line	sgMsh2	95324761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	143	95	22	0.231578947	exonic	Setdb1	nonsynonymous SNV	"Setdb1:NM_001163641:exon20:c.A3589G:p.T1197A,Setdb1:NM_001163642:exon20:c.A3586G:p.T1196A,Setdb1:NM_018877:exon20:c.A3589G:p.T1197A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999714	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M6	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	269	244	10	0.040983607	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	264	256	14	0.0546875	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	153	1	1	1	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999939	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	134	71	7	0.098591549	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9876526	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	96188350	12A2p6	cell line	sgMsh2	96188350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	122	0	0	NA	exonic	Sv2a	synonymous SNV	Sv2a:NM_022030:exon5:c.T981C:p.A327A	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999524	CTT	synonymous	NA	NA	NA	NA
M6	chr3	96220087	12A2p6	cell line	sgMsh2	96220087	T	C	SNV	Mutect2;Vardict	2	0.049	207	0	0	NA	exonic	H2ac21	nonsynonymous SNV	H2ac21:NM_178213:exon1:c.T172C:p.Y58H	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	1.76E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	96440748	12A2p6	cell line	sgMsh2	96440748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	88	0	0	NA	exonic	BC107364	nonsynonymous SNV	"BC107364:NM_001256180:exon3:c.A224G:p.N75S,BC107364:NM_001256181:exon3:c.A224G:p.N75S"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9948481	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	96526589	12A2p6	cell line	sgMsh2	96526589	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	39	0	0	NA	exonic	Hjv	synonymous SNV	Hjv:NM_027126:exon2:c.C75T:p.L25L	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9886763	TCC	synonymous	CTG	8	CTGCTGCT	NA
M6	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	151	1	0	0	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	7.81E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr3	96656998	12A2p6	cell line	sgMsh2	96656998	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	195	1	0	0	exonic	Itga10	nonsynonymous SNV	Itga10:NM_001302471:exon23:c.T2806C:p.Y936H	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	116	12	1	0.083333333	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9957075	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	180	48	2	0.041666667	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	AGT	synonymous	NA	NA	NA	NA
M6	chr3	99939331	12A2p6	cell line	sgMsh2	99939331	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.219	136	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon2:c.G170A:p.R57Q	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr3	100159792	12A2p6	cell line	sgMsh2	100159792	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.185	15	66	2	0.03030303	exonic	Wdr3	stopgain	Wdr3:NM_175552:exon3:c.G355T:p.G119X	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9446328	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	100161037	12A2p6	cell line	sgMsh2	100161037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	216	65	21	0.323076923	exonic	Wdr3	nonsynonymous SNV	Wdr3:NM_175552:exon2:c.T154A:p.L52I	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	99	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9971213	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	101056312	12A2p6	cell line	sgMsh2	101056312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	93	109	16	0.146788991	exonic	Ptgfrn	synonymous SNV	Ptgfrn:NM_011197:exon6:c.T1983C:p.S661S	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	GAG	synonymous	NA	NA	NA	NA
M6	chr3	103056908	12A2p6	cell line	sgMsh2	103056908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	212	1135	178	0.156828194	exonic	Csde1	nonsynonymous SNV	"Csde1:NM_001310693:exon18:c.T1982C:p.I661T,Csde1:NM_001161854:exon19:c.T2279C:p.I760T,Csde1:NM_144901:exon20:c.T2372C:p.I791T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.9143804	ATC	nonsynonymous	AGAA	11	AGAAAGAAAGA	NA
M6	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	14	2	0.142857143	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	383	142	6	0.042253521	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	55	16	0	0	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6744052	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	104054483	12A2p6	cell line	sgMsh2	104054483	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.182	74	80	15	0.1875	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon9:c.G1228A:p.V410I,Magi3:NM_133853:exon9:c.G1228A:p.V410I"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9979636	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	123	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9750705	GGA	synonymous	NA	NA	NA	NA
M6	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	73	15	0.205479452	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr3	105716778	12A2p6	cell line	sgMsh2	105716778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	108	0	0	NA	exonic	Inka2	nonsynonymous SNV	"Inka2:NM_001163356:exon2:c.A410G:p.Q137R,Inka2:NM_175398:exon2:c.A467G:p.Q156R"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	243	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	CTG	nonsynonymous	C	5	CCCCC	NA
M6	chr3	105951690	12A2p6	cell line	sgMsh2	105951690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	129	428	91	0.212616822	exonic	Atp5pb	synonymous SNV	"Atp5pb:NM_009725:exon5:c.A414G:p.V138V,Atp5pb:NM_001304719:exon6:c.A339G:p.V113V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999476	TTA	synonymous	NA	NA	NA	NA
M6	chr3	106128164	12A2p6	cell line	sgMsh2	106128164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	281	0	0	NA	exonic	Chia1	synonymous SNV	Chia1:NM_023186:exon6:c.T495G:p.A165A	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.477463758	2	0.9999267	CTT	synonymous	NA	NA	NA	NA
M6	chr3	106164096	12A2p6	cell line	sgMsh2	106164096	T	C	SNV	Mutect2;Vardict	2	0.023	363	4	0	0	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon3:c.A251G:p.K84R	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	3	1	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	106164811	12A2p6	cell line	sgMsh2	106164811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	668	2	0	0	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon2:c.T47C:p.V16A	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	1	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	106822035	12A2p6	cell line	sgMsh2	106822035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	195	0	0	NA	exonic	Olfr266	nonsynonymous SNV	Olfr266:NM_146489:exon1:c.A523C:p.N175H	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9979691	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	147	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999767	GCT	synonymous	NA	NA	NA	NA
M6	chr3	107447981	12A2p6	cell line	sgMsh2	107447981	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	126	0	0	NA	exonic	Kcnc4	stopgain	"Kcnc4:NM_001356447:exon2:c.G1150T:p.E384X,Kcnc4:NM_145922:exon2:c.G1150T:p.E384X"	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	198	42	1	0.023809524	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr3	108464426	12A2p6	cell line	sgMsh2	108464426	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.134	63	31	0	0	exonic	Elapor1	frameshift deletion	"Elapor1:NM_001033304:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001358065:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001346518:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358063:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358064:exon16:c.2131delA:p.M711Wfs*37"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr3	108756837	12A2p6	cell line	sgMsh2	108756837	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	62	0	0	NA	exonic	Aknad1	nonsynonymous SNV	Aknad1:NM_177859:exon4:c.A1115T:p.K372I	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr3	108883558	12A2p6	cell line	sgMsh2	108883558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	252	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon3:c.A151G:p.T51A,Fndc7:NM_177091:exon3:c.A151G:p.T51A"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.86E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	109628125	12A2p6	cell line	sgMsh2	109628125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	180	0	0	NA	exonic	Vav3	synonymous SNV	"Vav3:NM_146139:exon3:c.T192G:p.T64T,Vav3:NM_001378987:exon20:c.T1872G:p.T624T,Vav3:NM_020505:exon20:c.T1872G:p.T624T"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	CTG	synonymous	NA	NA	NA	NA
M6	chr3	114182647	12A2p6	cell line	sgMsh2	114182647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	84	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon49:c.T3737G:p.V1246G	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	2	0.9598975	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	175	3	0	0	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.8786675	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	116605233	12A2p6	cell line	sgMsh2	116605233	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	92	9	0	0	exonic	Sass6	frameshift deletion	"Sass6:NM_001289571:exon2:c.58delT:p.L22Cfs*13,Sass6:NM_028349:exon3:c.163delT:p.L57Cfs*13"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	179	8	0	0	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	116895535	12A2p6	cell line	sgMsh2	116895535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	245	118	15	0.127118644	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.T1054C:p.Y352H,Frrs1:NM_009146:exon10:c.T1054C:p.Y352H"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	ATA	nonsynonymous	A	5	AAAAA	NA
M6	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	165	68	3	0.044117647	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	117575905	12A2p6	cell line	sgMsh2	117575905	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	61	0	0	NA	exonic	Plppr5	synonymous SNV	"Plppr5:NM_001305451:exon1:c.G210A:p.S70S,Plppr5:NM_029425:exon1:c.G210A:p.S70S"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.936408	CGC	synonymous	NA	NA	NA	NA
M6	chr3	117800890	12A2p6	cell line	sgMsh2	117800890	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	148	118	23	0.194915254	exonic	Snx7	nonsynonymous SNV	Snx7:NM_029655:exon8:c.G1211T:p.R404M	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	121729520	12A2p6	cell line	sgMsh2	121729520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	52	162	23	0.141975309	exonic	F3	synonymous SNV	F3:NM_010171:exon3:c.T378C:p.F126F	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9951712	TTA	synonymous	NA	NA	NA	NA
M6	chr3	123112816	12A2p6	cell line	sgMsh2	123112816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	207	0	0	NA	exonic	Synpo2	synonymous SNV	Synpo2:NM_080451:exon4:c.A2850G:p.K950K	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTT	synonymous	NA	NA	NA	NA
M6	chr3	125437880	12A2p6	cell line	sgMsh2	125437880	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	166	0	0	NA	exonic	Ndst4	synonymous SNV	Ndst4:NM_022565:exon2:c.C97T:p.L33L	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999936	CCT	synonymous	NA	NA	NA	NA
M6	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	177	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.01E-09	CGA	synonymous	NA	NA	NA	NA
M6	chr3	126943351	12A2p6	cell line	sgMsh2	126943351	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	112	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001327939:exon37:c.C8622T:p.S2874S,Ank2:NM_001327938:exon39:c.C8868T:p.S2956S"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	AGG	synonymous	NA	NA	NA	NA
M6	chr3	126981840	12A2p6	cell line	sgMsh2	126981840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	158	0	0	NA	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_178655:exon4:c.A139C:p.N47H,Ank2:NM_001327938:exon24:c.A2641C:p.N881H,Ank2:NM_001327939:exon24:c.A2491C:p.N831H"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	127546742	12A2p6	cell line	sgMsh2	127546742	C	G	SNV	Mutect2;Vardict	2	0.038	157	33	0	0	exonic	Larp7	nonsynonymous SNV	Larp7:NM_138593:exon5:c.G446C:p.S149T	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.31E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr3	127815622	12A2p6	cell line	sgMsh2	127815622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	69	182	58	0.318681319	exonic	Ap1ar	nonsynonymous SNV	Ap1ar:NM_145964:exon6:c.G349A:p.A117T	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	203	32	0	0	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.999998	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Vardict	2	0.038	112	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	0.9999999	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr3	129999552	12A2p6	cell line	sgMsh2	129999552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	88	151	38	0.251655629	exonic	Sec24b	synonymous SNV	Sec24b:NM_207209:exon11:c.T2035C:p.L679L	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAA	synonymous	NA	NA	NA	NA
M6	chr3	130033850	12A2p6	cell line	sgMsh2	130033850	-	G	Insertion	Strelka2;Vardict	2	0.1654	133	64	0	0	exonic	Sec24b	frameshift insertion	Sec24b:NM_207209:exon3:c.998dupC:p.E334Rfs*5	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.887331523	NA	NA	CTG	frameshift	G	8	GGGGGGGG	1
M6	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	238	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	171	311	16	0.051446945	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.47E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	145	18	0	0	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999938	TAC	synonymous	NA	NA	NA	NA
M6	chr3	133485665	12A2p6	cell line	sgMsh2	133485665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	195	18	4	0.222222222	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.A3007G:p.T1003A,Tet2:NM_001346736:exon3:c.A3007G:p.T1003A"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	133486751	12A2p6	cell line	sgMsh2	133486751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	185	17	1	0.058823529	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.T1921C:p.Y641H,Tet2:NM_001346736:exon3:c.T1921C:p.Y641H"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	134829477	12A2p6	cell line	sgMsh2	134829477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	132	3	0	0	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.T205C:p.S69P	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999754	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	135326185	12A2p6	cell line	sgMsh2	135326185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	48	1	0	0	exonic	Slc9b2	nonsynonymous SNV	Slc9b2:NM_178877:exon7:c.A805G:p.T269A	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.990835	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	135423288	12A2p6	cell line	sgMsh2	135423288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	29	28	4	0.142857143	exonic	Cisd2	nonsynonymous SNV	Cisd2:NM_025902:exon1:c.A74G:p.D25G	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9783057	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	155	142	7	0.049295775	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.9132974	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	138282520	12A2p6	cell line	sgMsh2	138282520	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	252	0	0	NA	exonic	Adh1	nonsynonymous SNV	Adh1:NM_007409:exon4:c.G344A:p.S115N	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.86E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	280	462	21	0.045454545	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	AAA	nonsynonymous	A	5	AAAAA	NA
M6	chr3	138454726	12A2p6	cell line	sgMsh2	138454726	A	-	Deletion	Mutect2;Vardict	2	0.061	291	467	0	0	exonic	Adh5	frameshift deletion	"Adh5:NM_001288578:exon8:c.654delA:p.V220Lfs*4,Adh5:NM_007410:exon8:c.1020delA:p.V342Lfs*4"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr3	138480720	12A2p6	cell line	sgMsh2	138480720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	316	127	23	0.181102362	exonic	Metap1	nonsynonymous SNV	Metap1:NM_175224:exon3:c.T247C:p.Y83H	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.13E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	125	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9954801	CTC	synonymous	NA	NA	NA	NA
M6	chr3	144696887	12A2p6	cell line	sgMsh2	144696887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	248	1140	48	0.042105263	exonic	Sh3glb1	nonsynonymous SNV	"Sh3glb1:NM_001282042:exon7:c.A728G:p.Q243R,Sh3glb1:NM_001379173:exon7:c.A728G:p.Q243R,Sh3glb1:NM_019464:exon7:c.A728G:p.Q243R,Sh3glb1:NM_001282037:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379170:exon9:c.A839G:p.Q280R,Sh3glb1:NM_001379171:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379172:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379174:exon9:c.A839G:p.Q280R"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9998969	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Vardict	2	0.046	264	77	1	0.012987013	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Vardict	2	0.038	276	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	144952971	12A2p6	cell line	sgMsh2	144952971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	174	0	0	NA	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon14:c.T2482C:p.F828L	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	144963643	12A2p6	cell line	sgMsh2	144963643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	213	0	0	NA	exonic	Clca4a	synonymous SNV	Clca4a:NM_207208:exon7:c.T1146C:p.N382N	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
M6	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	136	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	9.33E-09	GTT	synonymous	NA	NA	NA	NA
M6	chr3	145889211	12A2p6	cell line	sgMsh2	145889211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	95	24	0	0	exonic	Ddah1	nonsynonymous SNV	Ddah1:NM_026993:exon5:c.A725G:p.Y242C	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	145930531	12A2p6	cell line	sgMsh2	145930531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	78	95	18	0.189473684	exonic	Bcl10	nonsynonymous SNV	Bcl10:NM_009740:exon2:c.T183A:p.S61R	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991299	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	101	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9998096	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	146650711	12A2p6	cell line	sgMsh2	146650711	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	178	0	0	NA	exonic	4930503B20Rik	frameshift deletion	4930503B20Rik:NM_029144:exon1:c.441delC:p.I148Sfs*27	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr3	146913305	12A2p6	cell line	sgMsh2	146913305	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	75	27	0	0	exonic	Ttll7	frameshift deletion	"Ttll7:NM_001302957:exon9:c.964delC:p.S325Afs*47,Ttll7:NM_001302958:exon9:c.964delC:p.S325Afs*47,Ttll7:NM_001357217:exon9:c.964delC:p.S325Afs*47"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr3	148837574	12A2p6	cell line	sgMsh2	148837574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	146	48	0	0	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon13:c.G2513T:p.R838M	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9954081	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	148837711	12A2p6	cell line	sgMsh2	148837711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	98	45	13	0.288888889	exonic	Adgrl2	synonymous SNV	Adgrl2:NM_001081298:exon13:c.C2376T:p.C792C	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	AGC	synonymous	NA	NA	NA	NA
M6	chr3	151541023	12A2p6	cell line	sgMsh2	151541023	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	245	0	0	NA	exonic	Adgrl4	nonsynonymous SNV	Adgrl4:NM_133222:exon14:c.A1959C:p.K653N	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	151732442	12A2p6	cell line	sgMsh2	151732442	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	139	0	0	NA	exonic	Ifi44	nonsynonymous SNV	Ifi44:NM_133871:exon8:c.G1207A:p.A403T	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999845	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr3	152226131	12A2p6	cell line	sgMsh2	152226131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	97	163	33	0.202453988	exonic	Fubp1	nonsynonymous SNV	"Fubp1:NM_001355369:exon17:c.A1616G:p.H539R,Fubp1:NM_001355370:exon17:c.A1613G:p.H538R,Fubp1:NM_001355371:exon17:c.A1616G:p.H539R,Fubp1:NM_001355372:exon17:c.A1616G:p.H539R,Fubp1:NM_001355373:exon17:c.A1616G:p.H539R,Fubp1:NM_001355374:exon17:c.A1613G:p.H538R,Fubp1:NM_057172:exon17:c.A1613G:p.H538R,Fubp1:NM_001355366:exon18:c.A1679G:p.H560R,Fubp1:NM_001355367:exon18:c.A1676G:p.H559R,Fubp1:NM_001355368:exon18:c.A1679G:p.H560R"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	152278905	12A2p6	cell line	sgMsh2	152278905	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	167	14	1	0.071428571	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon13:c.T1380G:p.C460W,Miga1:NM_174868:exon15:c.T1572G:p.C524W"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999976	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr3	152382963	12A2p6	cell line	sgMsh2	152382963	T	G	SNV	Mutect2;Vardict	2	0.031	193	126	4	0.031746032	exonic	Usp33	synonymous SNV	"Usp33:NM_001076676:exon20:c.T2238G:p.P746P,Usp33:NM_001252486:exon20:c.T2238G:p.P746P,Usp33:NM_001355666:exon20:c.T2262G:p.P754P,Usp33:NM_133247:exon20:c.T2262G:p.P754P"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M6	chr3	152785494	12A2p6	cell line	sgMsh2	152785494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	153	76	19	0.25	exonic	Pigk	synonymous SNV	"Pigk:NM_025662:exon11:c.T1170C:p.H390H,Pigk:NM_178016:exon12:c.T1311C:p.H437H"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999939	ATA	synonymous	NA	NA	NA	NA
M6	chr3	153907632	12A2p6	cell line	sgMsh2	153907632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	172	253	55	0.217391304	exonic	Rabggtb	nonsynonymous SNV	"Rabggtb:NM_001163479:exon7:c.G845T:p.R282M,Rabggtb:NM_011231:exon8:c.G989T:p.R330M,Rabggtb:NM_001163478:exon9:c.G965T:p.R322M"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	409	106	6	0.056603774	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	154622253	12A2p6	cell line	sgMsh2	154622253	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	55	110	16	0.145454545	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon9:c.T991G:p.L331V,Cryz:NM_001357673:exon9:c.T991G:p.L331V,Cryz:NM_001357674:exon9:c.T991G:p.L331V,Cryz:NM_001357675:exon9:c.T991G:p.L331V,Cryz:NM_001357676:exon9:c.T991G:p.L331V,Cryz:NM_009968:exon9:c.T991G:p.L331V"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9960359	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	154748360	12A2p6	cell line	sgMsh2	154748360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	133	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1171C:p.Y391H	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr3	155087133	12A2p6	cell line	sgMsh2	155087133	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	152	45	1	0.022222222	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.A1256G:p.E419G	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	5.69E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	169	35	0	0	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999837	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr3	155187768	12A2p6	cell line	sgMsh2	155187768	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	171	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon7:c.1105delG:p.A370Qfs*2	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M6	chr3	157146312	12A2p6	cell line	sgMsh2	157146312	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	159	0	0	NA	exonic	Negr1	synonymous SNV	"Negr1:NM_001039094:exon5:c.G750A:p.E250E,Negr1:NM_177274:exon5:c.G750A:p.E250E"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	AGT	synonymous	NA	NA	NA	NA
M6	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	139	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	6.61E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr3	157546722	12A2p6	cell line	sgMsh2	157546722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	104	120	9	0.075	exonic	Zranb2	nonsynonymous SNV	"Zranb2:NM_001355381:exon9:c.G770A:p.S257N,Zranb2:NM_017381:exon10:c.G977A:p.S326N"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.994095	AGT	nonsynonymous	GTTCAA	12	GTTCAAGTTCAA	NA
M6	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Vardict	2	0.033	172	195	8	0.041025641	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr3	158031539	12A2p6	cell line	sgMsh2	158031539	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	39	58	10	0.172413793	exonic	Srsf11	nonsynonymous SNV	"Srsf11:NM_001093753:exon1:c.A95C:p.N32T,Srsf11:NM_001379533:exon1:c.A95C:p.N32T,Srsf11:NM_001093752:exon2:c.A200C:p.N67T,Srsf11:NM_001379531:exon2:c.A200C:p.N67T,Srsf11:NM_001379532:exon2:c.A200C:p.N67T"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9599076	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr3	158054594	12A2p6	cell line	sgMsh2	158054594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	266	74	13	0.175675676	exonic	Lrrc40	synonymous SNV	"Lrrc40:NM_001289525:exon6:c.T337C:p.L113L,Lrrc40:NM_001359763:exon7:c.T622C:p.L208L,Lrrc40:NM_001289524:exon8:c.T337C:p.L113L,Lrrc40:NM_024194:exon8:c.T991C:p.L331L"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.52E-09	ATT	synonymous	NA	NA	NA	NA
M6	chr3	159515518	12A2p6	cell line	sgMsh2	159515518	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	196	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A485T:p.K162M,Depdc1a:NM_001172093:exon4:c.A485T:p.K162M,Depdc1a:NM_029523:exon4:c.A485T:p.K162M"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999713	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr3	159515569	12A2p6	cell line	sgMsh2	159515569	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	219	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A536C:p.N179T,Depdc1a:NM_001172093:exon4:c.A536C:p.N179T,Depdc1a:NM_029523:exon4:c.A536C:p.N179T"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9999245	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	160	38	0	0	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.02E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	6381056	12A2p6	cell line	sgMsh2	6381056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	125	833	232	0.278511405	exonic	Sdcbp	nonsynonymous SNV	"Sdcbp:NM_001098227:exon4:c.T200C:p.I67T,Sdcbp:NM_016807:exon4:c.T200C:p.I67T"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr4	11165096	12A2p6	cell line	sgMsh2	11165096	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	126	26	6	0.230769231	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.G119A:p.C40Y,Trp53inp1:NM_021897:exon3:c.G119A:p.C40Y"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr4	11165105	12A2p6	cell line	sgMsh2	11165105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	133	30	6	0.2	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.T128G:p.F43C,Trp53inp1:NM_021897:exon3:c.T128G:p.F43C"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	11292592	12A2p6	cell line	sgMsh2	11292592	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	146	59	2	0.033898305	exonic	Dpy19l4	synonymous SNV	Dpy19l4:NM_001081201:exon8:c.C829T:p.L277L	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999992	AGC	synonymous	AGC	11	AGCAGCAGCAG	NA
M6	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	188	99	6	0.060606061	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.84E-08	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	12164156	12A2p6	cell line	sgMsh2	12164156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	152	141	39	0.276595745	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon5:c.A670G:p.T224A,Cibar1:NM_026558:exon5:c.A682G:p.T228A"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	12168245	12A2p6	cell line	sgMsh2	12168245	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	164	70	9	0.128571429	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon4:c.A617G:p.N206S,Cibar1:NM_026558:exon4:c.A617G:p.N206S"	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999615	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	14506466	12A2p6	cell line	sgMsh2	14506466	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.3	156	0	0	NA	exonic	Slc26a7	frameshift insertion	Slc26a7:NM_145947:exon18:c.1881dupA:p.P628Tfs*4	4qA1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6	chr4	15976113	12A2p6	cell line	sgMsh2	15976113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	39	11	0.282051282	exonic	Nbn	nonsynonymous SNV	Nbn:NM_013752:exon9:c.T1073C:p.V358A	4qA2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990705	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	15981361	12A2p6	cell line	sgMsh2	15981361	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	37	11	0.297297297	exonic	Nbn	synonymous SNV	Nbn:NM_013752:exon11:c.G1452A:p.E484E	4qA2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	AGC	synonymous	NA	NA	NA	NA
M6	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	114	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	19366491	12A2p6	cell line	sgMsh2	19366491	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	97	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon5:c.C551T:p.P184L	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.101	80	30	2	0.066666667	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.541840894	2	0.9898757	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	21759627	12A2p6	cell line	sgMsh2	21759627	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	114	16	0	0	exonic	Tstd3	nonsynonymous SNV	Tstd3:NM_029840:exon2:c.A237G:p.I79M	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.999985	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	138	17	1	0.058823529	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9889231	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	21873968	12A2p6	cell line	sgMsh2	21873968	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	37	42	10	0.238095238	exonic	Pnisr	synonymous SNV	"Pnisr:NM_001369189:exon11:c.C1710T:p.R570R,Pnisr:NM_001369190:exon11:c.C984T:p.R328R,Pnisr:NM_001369191:exon11:c.C984T:p.R328R,Pnisr:NM_025669:exon11:c.C1710T:p.R570R"	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9870974	GCA	synonymous	AGCAGG	15	AGCAGGAGCAGGAGC	NA
M6	chr4	21892840	12A2p6	cell line	sgMsh2	21892840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	92	10	0	0	exonic	Coq3	synonymous SNV	Coq3:NM_172687:exon2:c.A141G:p.L47L	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9942366	TAC	synonymous	NA	NA	NA	NA
M6	chr4	25207152	12A2p6	cell line	sgMsh2	25207152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	90	0	0	NA	exonic	Fhl5	synonymous SNV	"Fhl5:NM_001355498:exon5:c.T615C:p.D205D,Fhl5:NM_021318:exon5:c.T615C:p.D205D,Fhl5:NM_001379528:exon6:c.T615C:p.D205D"	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	CAT	synonymous	NA	NA	NA	NA
M6	chr4	25250638	12A2p6	cell line	sgMsh2	25250638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	37	13	0.351351351	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon19:c.A2214G:p.L738L,Ufl1:NM_026194:exon19:c.A2214G:p.L738L"	4qA3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	CTA	synonymous	TGAC	9	TGACTGACT	NA
M6	chr4	31979762	12A2p6	cell line	sgMsh2	31979762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	43	27	11	0.407407407	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_009316:exon5:c.T370C:p.Y124H,Map3k7:NM_172688:exon5:c.T370C:p.Y124H"	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.991283	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	32644256	12A2p6	cell line	sgMsh2	32644256	A	-	Deletion	Strelka2;Vardict	2	0.2326	86	21	3	0.142857143	exonic	Casp8ap2	frameshift deletion	"Casp8ap2:NM_001122978:exon8:c.3328delA:p.K1112Nfs*5,Casp8ap2:NM_011997:exon8:c.3328delA:p.K1112Nfs*5"	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M6	chr4	32722967	12A2p6	cell line	sgMsh2	32722967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	114	12	3	0.25	exonic	Mdn1	synonymous SNV	Mdn1:NM_001081392:exon48:c.A7281G:p.T2427T	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	CAG	synonymous	NA	NA	NA	NA
M6	chr4	33944549	12A2p6	cell line	sgMsh2	33944549	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	132	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T936G:p.R312R,Cnr1:NM_001365881:exon2:c.T936G:p.R312R,Cnr1:NM_007726:exon2:c.T936G:p.R312R,Cnr1:NM_001355021:exon6:c.T936G:p.R312R"	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GTG	synonymous	NA	NA	NA	NA
M6	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	132	48	17	0.354166667	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999754	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr4	39451164	12A2p6	cell line	sgMsh2	39451164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	109	0	0	NA	exonic	1700009N14Rik	synonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A369G:p.K123K	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	AAG	synonymous	NA	NA	NA	NA
M6	chr4	40177796	12A2p6	cell line	sgMsh2	40177796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	96	105	19	0.180952381	exonic	Aco1	synonymous SNV	Aco1:NM_007386:exon8:c.A816G:p.G272G	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997349	GAG	synonymous	NA	NA	NA	NA
M6	chr4	41121239	12A2p6	cell line	sgMsh2	41121239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	84	24	11	0.458333333	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon7:c.T1016C:p.V339A	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994145	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	41379393	12A2p6	cell line	sgMsh2	41379393	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	89	87	6	0.068965517	exonic	Ubap1	synonymous SNV	"Ubap1:NM_001290454:exon4:c.G606A:p.R202R,Ubap1:NM_001355508:exon4:c.G606A:p.R202R,Ubap1:NM_023305:exon4:c.G606A:p.R202R"	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.9999756	GGG	synonymous	NA	NA	NA	NA
M6	chr4	41388100	12A2p6	cell line	sgMsh2	41388100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	157	110	26	0.236363636	exonic	Ubap1	nonsynonymous SNV	"Ubap1:NM_001290454:exon5:c.T1088C:p.L363P,Ubap1:NM_001355509:exon5:c.T347C:p.L116P,Ubap1:NM_001355508:exon6:c.T1271C:p.L424P,Ubap1:NM_023305:exon6:c.T1271C:p.L424P"	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.076	96	59	0	0	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr4	43654396	12A2p6	cell line	sgMsh2	43654396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	117	86	10	0.11627907	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon5:c.A416G:p.K139R	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	149	5	0	0	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.94E-08	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr4	44993453	12A2p6	cell line	sgMsh2	44993453	T	C	SNV	Mutect2;Vardict	2	0.068	144	14	0	0	exonic	Zbtb5	nonsynonymous SNV	"Zbtb5:NM_001163283:exon2:c.A1930G:p.S644G,Zbtb5:NM_001163284:exon2:c.A1930G:p.S644G,Zbtb5:NM_173399:exon2:c.A1930G:p.S644G"	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9964038	CTG	nonsynonymous	GACT	10	GACTGACTGA	NA
M6	chr4	44994084	12A2p6	cell line	sgMsh2	44994084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	72	11	2	0.181818182	exonic	Zbtb5	synonymous SNV	"Zbtb5:NM_001163283:exon2:c.T1299C:p.C433C,Zbtb5:NM_001163284:exon2:c.T1299C:p.C433C,Zbtb5:NM_173399:exon2:c.T1299C:p.C433C"	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	TAC	synonymous	NA	NA	NA	NA
M6	chr4	45043792	12A2p6	cell line	sgMsh2	45043792	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	70	11	1	0.090909091	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378819:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378820:exon8:c.G1469A:p.G490D,Fbxo10:NM_001378821:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378822:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378823:exon8:c.G1469A:p.G490D"	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Vardict	2	0.05	218	65	0	0	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr4	45399331	12A2p6	cell line	sgMsh2	45399331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	329	143	0	0	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.C807A:p.L269L	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-09	AGA	synonymous	NA	NA	NA	NA
M6	chr4	45399489	12A2p6	cell line	sgMsh2	45399489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	185	85	0	0	exonic	Slc25a51	nonsynonymous SNV	Slc25a51:NM_001009949:exon3:c.A649G:p.I217V	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	45444765	12A2p6	cell line	sgMsh2	45444765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	54	133	38	0.285714286	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon5:c.T1242C:p.A414A	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	CAG	synonymous	NA	NA	NA	NA
M6	chr4	45458236	12A2p6	cell line	sgMsh2	45458236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	55	109	29	0.266055046	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon3:c.T927C:p.T309T	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9960359	CAG	synonymous	NA	NA	NA	NA
M6	chr4	46020900	12A2p6	cell line	sgMsh2	46020900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	46	14	0.304347826	exonic	Tdrd7	synonymous SNV	"Tdrd7:NM_001290475:exon13:c.A2325G:p.P775P,Tdrd7:NM_001355189:exon13:c.A2226G:p.P742P,Tdrd7:NM_146142:exon13:c.A2226G:p.P742P"	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CAC	synonymous	NA	NA	NA	NA
M6	chr4	46629947	12A2p6	cell line	sgMsh2	46629947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	75	19	5	0.263157895	exonic	Tbc1d2	nonsynonymous SNV	Tbc1d2:NM_198664:exon4:c.T719C:p.V240A	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	47279934	12A2p6	cell line	sgMsh2	47279934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	57	2	0	0	exonic	Col15a1	nonsynonymous SNV	Col15a1:NM_009928:exon16:c.A2158G:p.T720A	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	47405561	12A2p6	cell line	sgMsh2	47405561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	164	47	7	0.14893617	exonic	Tgfbr1	nonsynonymous SNV	"Tgfbr1:NM_001312869:exon6:c.T914C:p.I305T,Tgfbr1:NM_001312868:exon7:c.T1151C:p.I384T,Tgfbr1:NM_009370:exon7:c.T1163C:p.I388T"	4qB1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9968492	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr4	52449331	12A2p6	cell line	sgMsh2	52449331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	22	90	25	0.277777778	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon6:c.T491C:p.M164T,Smc2:NM_008017:exon6:c.T491C:p.M164T"	4qB2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9659636	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	52995837	12A2p6	cell line	sgMsh2	52995837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	84	0	0	NA	exonic	Nipsnap3a	nonsynonymous SNV	Nipsnap3a:NM_028529:exon3:c.C284T:p.A95V	4qB2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	122	19	5	0.263157895	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999524	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr4	57076378	12A2p6	cell line	sgMsh2	57076378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	95	51	17	0.333333333	exonic	Epb41l4b	nonsynonymous SNV	"Epb41l4b:NM_001355492:exon11:c.A1082G:p.H361R,Epb41l4b:NM_019427:exon11:c.A1082G:p.H361R"	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997168	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	57103523	12A2p6	cell line	sgMsh2	57103523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	47	68	13	0.191176471	exonic	Epb41l4b	synonymous SNV	"Epb41l4b:NM_001355492:exon2:c.T312C:p.H104H,Epb41l4b:NM_019427:exon2:c.T312C:p.H104H"	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	CAT	synonymous	NA	NA	NA	NA
M6	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	200	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.77E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	58053269	12A2p6	cell line	sgMsh2	58053269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	125	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon43:c.A10075G:p.I3359V	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	58088241	12A2p6	cell line	sgMsh2	58088241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	71	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon31:c.A5207G:p.N1736S	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	58100861	12A2p6	cell line	sgMsh2	58100861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	43	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon23:c.A3800T:p.E1267V	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.991283	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	58146653	12A2p6	cell line	sgMsh2	58146653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	81	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon4:c.A988G:p.K330E	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9992862	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Vardict	2	0.062	63	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9840929	GTG	synonymous	NA	NA	NA	NA
M6	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Vardict	2	0.031	169	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	59737654	12A2p6	cell line	sgMsh2	59737654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	126	6	0	0	exonic	E130308A19Rik	nonsynonymous SNV	E130308A19Rik:NM_001015681:exon3:c.A1264G:p.K422E	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	CAA	nonsynonymous	CAC	8	CACCACCA	NA
M6	chr4	63356984	12A2p6	cell line	sgMsh2	63356984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	258	0	0	NA	exonic	Orm3	nonsynonymous SNV	Orm3:NM_001379520:exon3:c.G331A:p.E111K	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	6.96E-09	TGA	nonsynonymous	NA	NA	NA	NA
M6	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	124	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999583	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	59	19	0	0	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.477463758	2	0.00831687	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	68762239	12A2p6	cell line	sgMsh2	68762239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	85	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T2053G:p.F685V	4qC1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994519	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	68762410	12A2p6	cell line	sgMsh2	68762410	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	132	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.C1882A:p.L628I	4qC1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	0.9999999	AGG	nonsynonymous	GGGT	8	GGGTGGGT	NA
M6	chr4	70272739	12A2p6	cell line	sgMsh2	70272739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	127	36	0	0	exonic	Cdk5rap2	frameshift deletion	"Cdk5rap2:NM_001313762:exon20:c.2249delA:p.Q750Rfs*54,Cdk5rap2:NM_145990:exon23:c.3068delA:p.Q1023Rfs*54"	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTG	frameshift	NA	NA	NA	-1
M6	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	81	22	2	0.090909091	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7846523	CTA	synonymous	NA	NA	NA	NA
M6	chr4	70433397	12A2p6	cell line	sgMsh2	70433397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	108	19	1	0.052631579	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1486C:p.S496P	4qC2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr4	72851748	12A2p6	cell line	sgMsh2	72851748	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	138	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.C822T:p.D274D	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999835	GGT	synonymous	NA	NA	NA	NA
M6	chr4	74307008	12A2p6	cell line	sgMsh2	74307008	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	38	23	1	0.043478261	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon5:c.G448A:p.A150T,Kdm4c:NM_001172095:exon6:c.G724A:p.A242T,Kdm4c:NM_144787:exon6:c.G673A:p.A225T"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9879123	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr4	75957140	12A2p6	cell line	sgMsh2	75957140	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	135	2	0	0	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon23:c.3664delA:p.I1222fs*0,Ptprd:NM_001352629:exon24:c.3676delA:p.I1226fs*0,Ptprd:NM_001352630:exon24:c.3673delA:p.I1225fs*0,Ptprd:NM_001368993:exon24:c.3703delA:p.I1235fs*0,Ptprd:NM_001352628:exon25:c.3715delA:p.I1239fs*0,Ptprd:NM_001368991:exon34:c.3688delA:p.I1230fs*0,Ptprd:NM_011211:exon34:c.3691delA:p.I1231fs*0"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	nonsynonymous	NA	NA	NA	-1
M6	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	158	2	1	0.5	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	3.26E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	76133145	12A2p6	cell line	sgMsh2	76133145	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	220	9	3	0.333333333	exonic	Ptprd	synonymous SNV	"Ptprd:NM_001368992:exon8:c.C870T:p.D290D,Ptprd:NM_001368993:exon8:c.C870T:p.D290D,Ptprd:NM_001352628:exon9:c.C882T:p.D294D,Ptprd:NM_001352629:exon9:c.C882T:p.D294D,Ptprd:NM_001352630:exon9:c.C882T:p.D294D,Ptprd:NM_001368991:exon19:c.C900T:p.D300D,Ptprd:NM_011211:exon19:c.C900T:p.D300D"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	1.21E-09	CGT	synonymous	NA	NA	NA	NA
M6	chr4	76133175	12A2p6	cell line	sgMsh2	76133175	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	214	5	1	0.2	exonic	Ptprd	synonymous SNV	"Ptprd:NM_001368992:exon8:c.G840T:p.P280P,Ptprd:NM_001368993:exon8:c.G840T:p.P280P,Ptprd:NM_001352628:exon9:c.G852T:p.P284P,Ptprd:NM_001352629:exon9:c.G852T:p.P284P,Ptprd:NM_001352630:exon9:c.G852T:p.P284P,Ptprd:NM_001368991:exon19:c.G870T:p.P290P,Ptprd:NM_011211:exon19:c.G870T:p.P290P"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	TCG	synonymous	NA	NA	NA	NA
M6	chr4	83681465	12A2p6	cell line	sgMsh2	83681465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	99	2	1	0.5	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon16:c.T743C:p.M248T,Ccdc171:NM_001355378:exon17:c.T2540C:p.M847T"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997826	ATG	nonsynonymous	AGGCAT	12	AGGCATAGGCAT	NA
M6	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	148	5	0	0	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.9999496	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	84275845	12A2p6	cell line	sgMsh2	84275845	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	164	0	0	NA	exonic	Bnc2	nonsynonymous SNV	"Bnc2:NM_001369082:exon6:c.A3062C:p.N1021T,Bnc2:NM_172870:exon6:c.A3041C:p.N1014T,Bnc2:NM_001369081:exon7:c.A3263C:p.N1088T,Bnc2:NM_001369083:exon7:c.A3242C:p.N1081T,Bnc2:NM_001369084:exon7:c.A3008C:p.N1003T"	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	85067548	12A2p6	cell line	sgMsh2	85067548	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	109	5	1	0.2	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon17:c.C2835T:p.S945S	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	GCT	synonymous	NA	NA	NA	NA
M6	chr4	86445063	12A2p6	cell line	sgMsh2	86445063	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	62	0	0	NA	exonic	Saxo1	frameshift deletion	Saxo1:NM_001081096:exon4:c.1182delC:p.W395Gfs*9	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr4	86575940	12A2p6	cell line	sgMsh2	86575940	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.373	54	96	15	0.15625	exonic	Rraga	frameshift deletion	Rraga:NM_178376:exon1:c.22delA:p.K9Rfs*3	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr4	88414292	12A2p6	cell line	sgMsh2	88414292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	47	2	0	0	exonic	Hacd4	nonsynonymous SNV	"Hacd4:NM_001377100:exon6:c.T524G:p.V175G,Hacd4:NM_001377098:exon7:c.T671G:p.V224G,Hacd4:NM_001377099:exon7:c.T671G:p.V224G,Hacd4:NM_025760:exon7:c.T671G:p.V224G"	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	AAC	nonsynonymous	A	5	AAAAA	NA
M6	chr4	88880163	12A2p6	cell line	sgMsh2	88880163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	120	0	0	NA	exonic	Ifne	nonsynonymous SNV	Ifne:NM_177348:exon1:c.T17C:p.L6P	4qC4	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	90224531	12A2p6	cell line	sgMsh2	90224531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	191	0	0	NA	exonic	Zfp352	nonsynonymous SNV	Zfp352:NM_153102:exon2:c.T907A:p.C303S	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	94599690	12A2p6	cell line	sgMsh2	94599690	T	C	SNV	Mutect2;Vardict	2	0.065	70	10	0	0	exonic	Gm12657	synonymous SNV	Gm12657:NM_001081019:exon2:c.T306C:p.V102V	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.978117	TTG	synonymous	NA	NA	NA	NA
M6	chr4	95050417	12A2p6	cell line	sgMsh2	95050417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	96	260	79	0.303846154	exonic	Jun	synonymous SNV	Jun:NM_010591:exon1:c.A855G:p.E285E	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997349	TTT	synonymous	T	5	TTTTT	NA
M6	chr4	96307431	12A2p6	cell line	sgMsh2	96307431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	187	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.A1027G:p.I343V	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	96579407	12A2p6	cell line	sgMsh2	96579407	A	T	SNV	Mutect2;Vardict	2	0.042	137	0	0	NA	exonic	Cyp2j9	nonsynonymous SNV	Cyp2j9:NM_028979:exon5:c.T841A:p.F281I	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	3.01E-08	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr4	96584125	12A2p6	cell line	sgMsh2	96584125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	180	0	0	NA	exonic	Cyp2j9	synonymous SNV	Cyp2j9:NM_028979:exon3:c.A375G:p.G125G	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	ATC	synonymous	NA	NA	NA	NA
M6	chr4	96723946	12A2p6	cell line	sgMsh2	96723946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	135	0	0	NA	exonic	Gm12695	nonsynonymous SNV	Gm12695:NM_001081284:exon12:c.T1579C:p.Y527H	4qC5	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	98357954	12A2p6	cell line	sgMsh2	98357954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	149	137	31	0.226277372	exonic	Tm2d1	nonsynonymous SNV	Tm2d1:NM_053157:exon6:c.A610G:p.T204A	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	GTT	nonsynonymous	T	5	TTTTT	NA
M6	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	109	71	1	0.014084507	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9757602	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	98931511	12A2p6	cell line	sgMsh2	98931511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	108	118	23	0.194915254	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon5:c.A1047G:p.T349T,Usp1:NM_001301414:exon6:c.A1209G:p.T403T,Usp1:NM_146144:exon6:c.A1209G:p.T403T"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99988	CAC	synonymous	NA	NA	NA	NA
M6	chr4	98973478	12A2p6	cell line	sgMsh2	98973478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	97	53	24	0.452830189	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_001369285:exon31:c.T3911C:p.V1304A,Dock7:NM_026082:exon31:c.T3911C:p.V1304A,Dock7:NM_001290636:exon32:c.T4001C:p.V1334A,Dock7:NM_001369286:exon32:c.T4001C:p.V1334A"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	100441210	12A2p6	cell line	sgMsh2	100441210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	106	5	0	0	exonic	Ror1	synonymous SNV	Ror1:NM_013845:exon9:c.A1779G:p.L593L	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	TAC	synonymous	NA	NA	NA	NA
M6	chr4	100966265	12A2p6	cell line	sgMsh2	100966265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	164	21	3	0.142857143	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon10:c.T1513C:p.Y505H	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	101137712	12A2p6	cell line	sgMsh2	101137712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	104	0	0	NA	exonic	Raver2	nonsynonymous SNV	Raver2:NM_183024:exon10:c.T1631C:p.V544A	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	101160041	12A2p6	cell line	sgMsh2	101160041	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	70	86	23	0.26744186	exonic	Jak1	synonymous SNV	Jak1:NM_146145:exon17:c.C2391A:p.T797T	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	GGG	synonymous	GTCTT	10	GTCTTGTCTT	NA
M6	chr4	101599194	12A2p6	cell line	sgMsh2	101599194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	143	0	0	NA	exonic	Dnajc6	nonsynonymous SNV	"Dnajc6:NM_001164583:exon4:c.T488C:p.V163A,Dnajc6:NM_001164584:exon4:c.T398C:p.V133A,Dnajc6:NM_001355179:exon4:c.T407C:p.V136A,Dnajc6:NM_001164585:exon5:c.T284C:p.V95A,Dnajc6:NM_001355180:exon5:c.T284C:p.V95A,Dnajc6:NM_198412:exon5:c.T284C:p.V95A"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	101967930	12A2p6	cell line	sgMsh2	101967930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	157	0	0	NA	exonic	Gm12790	nonsynonymous SNV	Gm12790:NM_001377350:exon3:c.A286G:p.K96E	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	TTA	nonsynonymous	ACTT	9	ACTTACTTA	NA
M6	chr4	102605137	12A2p6	cell line	sgMsh2	102605137	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	100	2	0	0	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.A1493T:p.D498V,Pde4b:NM_001177981:exon10:c.A1310T:p.D437V,Pde4b:NM_001177982:exon10:c.A1253T:p.D418V,Pde4b:NM_001374780:exon15:c.A1778T:p.D593V,Pde4b:NM_019840:exon15:c.A1964T:p.D655V"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997965	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	103139430	12A2p6	cell line	sgMsh2	103139435	GAGGAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.483	63	29	2	0.068965517	exonic	Mier1	nonframeshift deletion	"Mier1:NM_001039081:exon4:c.253_258del:p.E92_E93del,Mier1:NM_001286223:exon4:c.250_255del:p.E91_E92del,Mier1:NM_001286221:exon6:c.388_393del:p.E137_E138del,Mier1:NM_001286222:exon6:c.304_309del:p.E109_E110del,Mier1:NM_027696:exon6:c.304_309del:p.E109_E110del"	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	AGA	inframe	GAG	32	GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGA	-6
M6	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	138	43	1	0.023255814	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9982503	CTG	synonymous	NA	NA	NA	NA
M6	chr4	105219449	12A2p6	cell line	sgMsh2	105219449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	96	31	9	0.290322581	exonic	Plpp3	nonsynonymous SNV	Plpp3:NM_080555:exon5:c.A758G:p.H253R	4qC6	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997349	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	106359040	12A2p6	cell line	sgMsh2	106359040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	63	27	5	0.185185185	exonic	Usp24	synonymous SNV	Usp24:NM_183225:exon10:c.T1084C:p.L362L	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	CTT	synonymous	NA	NA	NA	NA
M6	chr4	106407959	12A2p6	cell line	sgMsh2	106407959	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	123	44	4	0.090909091	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon45:c.A5285T:p.E1762V	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999481	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	106636819	12A2p6	cell line	sgMsh2	106636819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	67	2	1	0.5	exonic	Ttc22	synonymous SNV	Ttc22:NM_177667:exon5:c.T975C:p.L325L	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	TTA	synonymous	NA	NA	NA	NA
M6	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	105	47	2	0.042553191	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9982581	TAG	synonymous	GTA	8	GTAGTAGT	NA
M6	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	168	7	0	0	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9997079	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	108642133	12A2p6	cell line	sgMsh2	108642133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	100	9	2	0.222222222	exonic	Zfyve9	synonymous SNV	"Zfyve9:NM_183300:exon17:c.T1914C:p.D638D,Zfyve9:NM_001347163:exon18:c.T3987C:p.D1329D,Zfyve9:NM_001384118:exon18:c.T3987C:p.D1329D"	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	CAT	synonymous	NA	NA	NA	NA
M6	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	193	96	4	0.041666667	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9987088	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	109083130	12A2p6	cell line	sgMsh2	109083130	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	133	152	42	0.276315789	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon8:c.T567A:p.D189E,Osbpl9:NM_001355191:exon9:c.T363A:p.D121E,Osbpl9:NM_173350:exon9:c.T606A:p.D202E,Osbpl9:NM_001355190:exon10:c.T363A:p.D121E,Osbpl9:NM_133885:exon11:c.T858A:p.D286E,Osbpl9:NM_001346502:exon12:c.T927A:p.D309E,Osbpl9:NM_001368727:exon12:c.T897A:p.D299E"	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	136	94	6	0.063829787	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.9181789	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr4	109925893	12A2p6	cell line	sgMsh2	109925893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	145	126	25	0.198412698	exonic	Faf1	synonymous SNV	Faf1:NM_007983:exon17:c.T1581C:p.A527A	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	CTC	synonymous	NA	NA	NA	NA
M6	chr4	110213217	12A2p6	cell line	sgMsh2	110213217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	152	0	0	NA	exonic	Elavl4	nonsynonymous SNV	"Elavl4:NM_001038698:exon4:c.C419T:p.P140L,Elavl4:NM_001163397:exon4:c.C428T:p.P143L,Elavl4:NM_001163399:exon4:c.C434T:p.P145L,Elavl4:NM_001347178:exon4:c.C419T:p.P140L,Elavl4:NM_010488:exon4:c.C434T:p.P145L,Elavl4:NM_001357190:exon5:c.C413T:p.P138L"	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr4	110580106	12A2p6	cell line	sgMsh2	110580106	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	84	0	0	NA	exonic	Agbl4	synonymous SNV	"Agbl4:NM_001048189:exon3:c.G213A:p.R71R,Agbl4:NM_001284190:exon3:c.G213A:p.R71R,Agbl4:NM_030231:exon3:c.G213A:p.R71R"	4qC7	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GGC	synonymous	NA	NA	NA	NA
M6	chr4	112125158	12A2p6	cell line	sgMsh2	112125158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	117	0	0	NA	exonic	Skint4	nonsynonymous SNV	"Skint4:NM_001357339:exon6:c.T847A:p.S283T,Skint4:NM_178786:exon6:c.T847A:p.S283T,Skint4:NM_001347180:exon7:c.T823A:p.S275T"	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	138	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999997	GCT	synonymous	NA	NA	NA	NA
M6	chr4	113238336	12A2p6	cell line	sgMsh2	113238336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	224	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon3:c.G125A:p.G42D	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr4	115016199	12A2p6	cell line	sgMsh2	115016199	A	T	SNV	Mutect2;Vardict	2	0.045	99	15	1	0.066666667	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon9:c.A340T:p.I114F,Stil:NM_001304555:exon10:c.A1018T:p.I340F,Stil:NM_001304559:exon10:c.A1018T:p.I340F,Stil:NM_009185:exon10:c.A1018T:p.I340F"	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.999992	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	115016252	12A2p6	cell line	sgMsh2	115016252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	93	24	3	0.125	exonic	Stil	synonymous SNV	"Stil:NM_001304551:exon9:c.T393G:p.V131V,Stil:NM_001304555:exon10:c.T1071G:p.V357V,Stil:NM_001304559:exon10:c.T1071G:p.V357V,Stil:NM_009185:exon10:c.T1071G:p.V357V"	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	TTC	synonymous	NA	NA	NA	NA
M6	chr4	115432495	12A2p6	cell line	sgMsh2	115432495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	144	0	0	NA	exonic	Cyp4a12b	synonymous SNV	Cyp4a12b:NM_172306:exon5:c.C558T:p.H186H	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	ACA	synonymous	NA	NA	NA	NA
M6	chr4	115628670	12A2p6	cell line	sgMsh2	115628670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	28	13	2	0.153846154	exonic	Cyp4b1	nonsynonymous SNV	Cyp4b1:NM_007823:exon8:c.T1069C:p.W357R	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9768578	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	116163736	12A2p6	cell line	sgMsh2	116163736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	269	21	6	0.285714286	exonic	Tspan1	synonymous SNV	Tspan1:NM_133681:exon6:c.A483G:p.S161S	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.88E-09	GTG	synonymous	NA	NA	NA	NA
M6	chr4	116704648	12A2p6	cell line	sgMsh2	116704648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	79	27	10	0.37037037	exonic	Mmachc	synonymous SNV	Mmachc:NM_025962:exon3:c.A288G:p.E96E	4qD1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	CTT	synonymous	NA	NA	NA	NA
M6	chr4	117760430	12A2p6	cell line	sgMsh2	117760430	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	136	0	0	NA	exonic	Klf17	nonsynonymous SNV	Klf17:NM_029416:exon2:c.A729T:p.R243S	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	117864847	12A2p6	cell line	sgMsh2	117864847	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	78	77	5	0.064935065	exonic	Slc6a9	nonsynonymous SNV	"Slc6a9:NM_001355175:exon9:c.G1351A:p.A451T,Slc6a9:NM_001369017:exon9:c.G1099A:p.A367T,Slc6a9:NM_001369016:exon10:c.G1294A:p.A432T,Slc6a9:NM_008135:exon10:c.G1294A:p.A432T"	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.6370195	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr4	118366133	12A2p6	cell line	sgMsh2	118366133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	80	19	7	0.368421053	exonic	Szt2	synonymous SNV	Szt2:NM_198170:exon66:c.A9252C:p.G3084G	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GTC	synonymous	NA	NA	NA	NA
M6	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Vardict	2	0.073	60	55	3	0.054545455	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.8510532	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M6	chr4	118709712	12A2p6	cell line	sgMsh2	118709712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	170	0	0	NA	exonic	Olfr1341	nonsynonymous SNV	Olfr1341:NM_146853:exon1:c.T304C:p.Y102H	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999998	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	118829749	12A2p6	cell line	sgMsh2	118829749	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.303	329	0	0	NA	exonic	Olfr1333	synonymous SNV	Olfr1333:NM_207157:exon1:c.G690A:p.K230K	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-09	ACT	synonymous	NA	NA	NA	NA
M6	chr4	118829751	12A2p6	cell line	sgMsh2	118829751	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.303	329	0	0	NA	exonic	Olfr1333	stopgain	Olfr1333:NM_207157:exon1:c.A688T:p.K230X	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-09	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	115	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9993499	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	120097174	12A2p6	cell line	sgMsh2	120097174	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.G2686T:p.A896S	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9613148	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr4	120162006	12A2p6	cell line	sgMsh2	120162006	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	71	0	0	NA	exonic	Edn2	nonsynonymous SNV	Edn2:NM_007902:exon2:c.T191G:p.I64S	4qD2.1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9975765	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	120535475	12A2p6	cell line	sgMsh2	120535475	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	112	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon3:c.G966T:p.K322N	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr4	121082857	12A2p6	cell line	sgMsh2	121082857	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	75	135	3	0.022222222	exonic	Zmpste24	frameshift deletion	Zmpste24:NM_172700:exon5:c.591delT:p.F197Lfs*8	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	219	43	1	0.023255814	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999992	ATT	synonymous	NA	NA	NA	NA
M6	chr4	123117040	12A2p6	cell line	sgMsh2	123117040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	193	0	0	NA	exonic	Oxct2b	nonsynonymous SNV	Oxct2b:NM_181859:exon1:c.T752C:p.V251A	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	123376393	12A2p6	cell line	sgMsh2	123376393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	46	126	36	0.285714286	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon78:c.T13883C:p.M4628T,Macf1:NM_001199136:exon83:c.T19964C:p.M6655T"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	123408505	12A2p6	cell line	sgMsh2	123408505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	138	47	11	0.234042553	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A2203G:p.T735A	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.6132248	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	123409107	12A2p6	cell line	sgMsh2	123409107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	89	56	20	0.357142857	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A1601G:p.Y534C	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	121	3	1	0.333333333	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.9999993	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	123474499	12A2p6	cell line	sgMsh2	123474499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	203	1	0	0	exonic	Macf1	synonymous SNV	Macf1:NM_001199136:exon36:c.A6468G:p.K2156K	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATT	synonymous	NA	NA	NA	NA
M6	chr4	123474578	12A2p6	cell line	sgMsh2	123474578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	174	2	1	0.5	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A6389G:p.E2130G	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	TTC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M6	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	148	150	50	0.333333333	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999915	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	124838723	12A2p6	cell line	sgMsh2	124838723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	91	6	1	0.166666667	exonic	Mtf1	nonsynonymous SNV	Mtf1:NM_008636:exon9:c.A1573G:p.T525A	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	102	10	2	0.2	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9707716	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	120	1	0	0	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.493558042	2	0.9923864	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	81	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9154238	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	108	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9993227	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr4	125641560	12A2p6	cell line	sgMsh2	125641560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	129	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon5:c.T749C:p.M250T	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	84	139	10	0.071942446	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.8967607	TAG	synonymous	NA	NA	NA	NA
M6	chr4	126757006	12A2p6	cell line	sgMsh2	126757006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	61	57	10	0.175438596	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon2:c.T80C:p.L27P,AU040320:NM_001035526:exon2:c.T80C:p.L27P,AU040320:NM_133886:exon2:c.T80C:p.L27P"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9973297	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	126836683	12A2p6	cell line	sgMsh2	126836683	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	56	66	18	0.272727273	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon11:c.T1702C:p.Y568H,AU040320:NM_001035526:exon11:c.T1702C:p.Y568H,AU040320:NM_133886:exon11:c.T1702C:p.Y568H,AU040320:NM_001355196:exon13:c.T1639C:p.Y547H"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	127128894	12A2p6	cell line	sgMsh2	127128894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	81	11	3	0.272727273	exonic	Tmem35b	synonymous SNV	Tmem35b:NM_001099319:exon3:c.T327C:p.S109S	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	GTA	synonymous	NA	NA	NA	NA
M6	chr4	127355639	12A2p6	cell line	sgMsh2	127355639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	112	0	0	NA	exonic	Gjb5	synonymous SNV	Gjb5:NM_010291:exon2:c.A711G:p.K237K	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999079	CTT	synonymous	NA	NA	NA	NA
M6	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	121	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	65	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9979485	CAT	synonymous	NA	NA	NA	NA
M6	chr4	129182365	12A2p6	cell line	sgMsh2	129182365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	187	48	11	0.229166667	exonic	S100pbp	nonsynonymous SNV	"S100pbp:NM_001379589:exon2:c.G166A:p.E56K,S100pbp:NM_001379591:exon2:c.G166A:p.E56K,S100pbp:NM_001379593:exon2:c.G166A:p.E56K,S100pbp:NM_001379597:exon2:c.G166A:p.E56K,S100pbp:NM_001347203:exon3:c.G166A:p.E56K,S100pbp:NM_001361317:exon3:c.G166A:p.E56K,S100pbp:NM_001379588:exon3:c.G166A:p.E56K,S100pbp:NM_001379590:exon3:c.G166A:p.E56K,S100pbp:NM_001379592:exon3:c.G166A:p.E56K,S100pbp:NM_001379594:exon3:c.G166A:p.E56K,S100pbp:NM_001379595:exon3:c.G166A:p.E56K,S100pbp:NM_001379596:exon3:c.G166A:p.E56K,S100pbp:NM_001379598:exon3:c.G166A:p.E56K,S100pbp:NM_001379599:exon3:c.G166A:p.E56K,S100pbp:NM_029036:exon3:c.G166A:p.E56K"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	85	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.89836	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	129607148	12A2p6	cell line	sgMsh2	129607148	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	226	160	39	0.24375	exonic	Tmem234	synonymous SNV	"Tmem234:NM_001368255:exon4:c.G297A:p.G99G,Tmem234:NM_001368256:exon4:c.G297A:p.G99G,Tmem234:NM_001368257:exon4:c.G270A:p.G90G,Tmem234:NM_029748:exon4:c.G297A:p.G99G,Tmem234:NM_001368258:exon5:c.G180A:p.G60G,Tmem234:NM_001368259:exon5:c.G180A:p.G60G,Tmem234:NM_001368260:exon5:c.G141A:p.G47G"	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.04E-08	GGA	synonymous	NA	NA	NA	NA
M6	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Vardict	2	0.069	94	18	0	0	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6	chr4	130314024	12A2p6	cell line	sgMsh2	130314024	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	171	3	2	0.666666667	exonic	Fabp3	nonsynonymous SNV	Fabp3:NM_010174:exon3:c.C317T:p.T106I	4qD2.2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	ACT	nonsynonymous	ACTA	8	ACTAACTA	NA
M6	chr4	131819618	12A2p6	cell line	sgMsh2	131819618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	38	22	2	0.090909091	exonic	Ptpru	nonsynonymous SNV	"Ptpru:NM_001083119:exon6:c.T761C:p.V254A,Ptpru:NM_011214:exon6:c.T761C:p.V254A"	4qD2.3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9879123	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	138	29	5	0.172413793	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9993071	TTC	synonymous	NA	NA	NA	NA
M6	chr4	133061867	12A2p6	cell line	sgMsh2	133061867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	52	16	5	0.3125	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A418G:p.S140G	4qD2.3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	108	29	4	0.137931034	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9966944	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr4	134472876	12A2p6	cell line	sgMsh2	134472876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	72	323	105	0.325077399	exonic	Stmn1	nonsynonymous SNV	Stmn1:NM_019641:exon4:c.A259G:p.I87V	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	91	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9949597	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	134913128	12A2p6	cell line	sgMsh2	134913128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	125	173	44	0.25433526	exonic	Tmem50a	nonsynonymous SNV	Tmem50a:NM_027935:exon2:c.A56G:p.K19R	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	134924269	12A2p6	cell line	sgMsh2	134924269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	29	27	5	0.185185185	exonic	Rsrp1	nonsynonymous SNV	Rsrp1:NM_023665:exon2:c.T343C:p.Y115H	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9783057	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	135416591	12A2p6	cell line	sgMsh2	135416591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	159	58	20	0.344827586	exonic	Rcan3	synonymous SNV	Rcan3:NM_022980:exon5:c.A549G:p.K183K	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	ATT	synonymous	NA	NA	NA	NA
M6	chr4	135479566	12A2p6	cell line	sgMsh2	135479566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	59	44	21	0.477272727	exonic	Nipal3	nonsynonymous SNV	"Nipal3:NM_001347220:exon4:c.A316G:p.I106V,Nipal3:NM_001361484:exon4:c.A316G:p.I106V,Nipal3:NM_028995:exon4:c.A316G:p.I106V"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9410224	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	135872245	12A2p6	cell line	sgMsh2	135872245	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	155	101	28	0.277227723	exonic	Pnrc2	synonymous SNV	Pnrc2:NM_026383:exon3:c.A192T:p.G64G	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9996992	TTC	synonymous	C	5	CCCCC	NA
M6	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	102	186	0	0	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9996504	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	136940317	12A2p6	cell line	sgMsh2	136940317	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	29	0	0	NA	exonic	Epha8	synonymous SNV	Epha8:NM_007939:exon4:c.C852T:p.P284P	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9783057	CGG	synonymous	G	5	GGGGG	NA
M6	chr4	136951779	12A2p6	cell line	sgMsh2	136951779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	151	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon2:c.T142C:p.Y48H	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	136995549	12A2p6	cell line	sgMsh2	136995549	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	78	14	4	0.285714286	exonic	Zbtb40	synonymous SNV	Zbtb40:NM_198248:exon12:c.G2217A:p.P739P	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991299	CCG	synonymous	NA	NA	NA	NA
M6	chr4	137423336	12A2p6	cell line	sgMsh2	137423336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	98	0	0	NA	exonic	Cela3b	nonsynonymous SNV	Cela3b:NM_026419:exon6:c.T550C:p.Y184H	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	137553774	12A2p6	cell line	sgMsh2	137553774	C	T	SNV	Mutect2;Vardict	2	0.198	19	55	14	0.254545455	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon74:c.C10056T:p.V3352V	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9587574	TCC	synonymous	NA	NA	NA	NA
M6	chr4	137559090	12A2p6	cell line	sgMsh2	137559090	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	52	58	15	0.25862069	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon79:c.G10819A:p.V3607M	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr4	137610706	12A2p6	cell line	sgMsh2	137610706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	99	28	0.282828283	exonic	Usp48	nonsynonymous SNV	"Usp48:NM_001347227:exon7:c.G791A:p.G264E,Usp48:NM_001355588:exon7:c.G791A:p.G264E,Usp48:NM_130879:exon7:c.G791A:p.G264E"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr4	138103404	12A2p6	cell line	sgMsh2	138103404	A	-	Deletion	Mutect2;Vardict	2	0.055	131	59	0	0	exonic	Eif4g3	frameshift deletion	"Eif4g3:NM_001369130:exon6:c.529delA:p.T179Lfs*1,Eif4g3:NM_001355699:exon7:c.562delA:p.T190Lfs*1,Eif4g3:NM_001369131:exon8:c.529delA:p.T179Lfs*1,Eif4g3:NM_001256195:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_001256198:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_172703:exon9:c.469delA:p.T159Lfs*1"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	NA	NA	GAA	frameshift	AG	9	AGAGAGAGA	-1
M6	chr4	138288156	12A2p6	cell line	sgMsh2	138288156	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	66	0	0	NA	exonic	Kif17	nonsynonymous SNV	Kif17:NM_010623:exon8:c.T1615G:p.S539A	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	138291492	12A2p6	cell line	sgMsh2	138291492	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.429	29	0	0	NA	exonic	Kif17	frameshift deletion	"Kif17:NM_001190978:exon8:c.1441delC:p.L482Cfs*4,Kif17:NM_010623:exon10:c.2152delC:p.L719Cfs*4"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Vardict	2	0.095	46	38	1	0.026315789	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.509652326	2	0.8193596	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.408	81	2	0	0	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6	chr4	139349016	12A2p6	cell line	sgMsh2	139349016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	104	126	14	0.111111111	exonic	Mrto4	nonsynonymous SNV	"Mrto4:NM_001290810:exon4:c.A263G:p.N88S,Mrto4:NM_001356476:exon4:c.A122G:p.N41S,Mrto4:NM_023536:exon4:c.A263G:p.N88S"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	139371773	12A2p6	cell line	sgMsh2	139371773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	30	48	13	0.270833333	exonic	Emc1	nonsynonymous SNV	"Emc1:NM_001039200:exon20:c.A2557G:p.T853A,Emc1:NM_146157:exon21:c.A2566G:p.T856A"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9796647	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	139410659	12A2p6	cell line	sgMsh2	139410659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	58	48	15	0.3125	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon25:c.T3326C:p.L1109P	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9967463	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	139463368	12A2p6	cell line	sgMsh2	139463368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	63	110	36	0.327272727	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon82:c.A12185G:p.K4062R	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	76	21	0	0	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.778393	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	140028713	12A2p6	cell line	sgMsh2	140028713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	121	0	0	NA	exonic	Igsf21	synonymous SNV	Igsf21:NM_198610:exon7:c.A1086G:p.L362L	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CTA	synonymous	NA	NA	NA	NA
M6	chr4	140710387	12A2p6	cell line	sgMsh2	140710387	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	88	206	45	0.218446602	exonic	Rcc2	nonsynonymous SNV	Rcc2:NM_173867:exon4:c.T428G:p.L143R	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	140737313	12A2p6	cell line	sgMsh2	140737313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	131	0	0	NA	exonic	Padi6	nonsynonymous SNV	Padi6:NM_153106:exon6:c.T604C:p.S202P	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999737	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	141247451	12A2p6	cell line	sgMsh2	141247451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	80	5	0	0	exonic	Arhgef19	synonymous SNV	"Arhgef19:NM_001379652:exon4:c.T762C:p.D254D,Arhgef19:NM_172520:exon5:c.T762C:p.D254D,Arhgef19:NM_001379647:exon6:c.T762C:p.D254D"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	ATC	synonymous	NA	NA	NA	NA
M6	chr4	141247457	12A2p6	cell line	sgMsh2	141247457	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	80	3	0	0	exonic	Arhgef19	nonsynonymous SNV	"Arhgef19:NM_001379652:exon4:c.C768A:p.N256K,Arhgef19:NM_172520:exon5:c.C768A:p.N256K,Arhgef19:NM_001379647:exon6:c.C768A:p.N256K"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr4	141379731	12A2p6	cell line	sgMsh2	141379731	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	56	7	0	0	exonic	Fam131c	synonymous SNV	Fam131c:NM_001085513:exon2:c.C76T:p.L26L	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.52574661	2	0.9224513	CCT	synonymous	NA	NA	NA	NA
M6	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Vardict	2	0.082	35	1	0	0	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	3	0.540688	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	141628313	12A2p6	cell line	sgMsh2	141628313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	91	15	2	0.133333333	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon16:c.A2575T:p.M859L,Plekhm2:NM_001033150:exon17:c.A2635T:p.M879L"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	141629940	12A2p6	cell line	sgMsh2	141629940	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	51	12	4	0.333333333	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001347237:exon13:c.G2160A:p.A720A,Plekhm2:NM_001033150:exon14:c.G2220A:p.A740A"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	TCG	synonymous	NA	NA	NA	NA
M6	chr4	141776940	12A2p6	cell line	sgMsh2	141776940	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	46	37	12	0.324324324	exonic	Dnajc16	synonymous SNV	Dnajc16:NM_172338:exon5:c.A708T:p.L236L	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.992839	GTA	synonymous	NA	NA	NA	NA
M6	chr4	143135359	12A2p6	cell line	sgMsh2	143135359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	154	105	21	0.2	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.T1360C:p.S454P,Prdm2:NM_001256380:exon8:c.T1360C:p.S454P"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	143180932	12A2p6	cell line	sgMsh2	143180932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	110	14	2	0.142857143	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon3:c.A69G:p.R23R,Prdm2:NM_001256380:exon3:c.A69G:p.R23R"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	CTC	synonymous	NA	NA	NA	NA
M6	chr4	143726070	12A2p6	cell line	sgMsh2	143726070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	142	0	0	NA	exonic	Pramel24	nonsynonymous SNV	Pramel24:NM_001085412:exon2:c.A70G:p.T24A	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999873	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Vardict	2	0.052	203	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	9.74E-09	CCT	synonymous	NA	NA	NA	NA
M6	chr4	143949937	12A2p6	cell line	sgMsh2	143949937	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	202	0	0	NA	exonic	Pramel16	nonsynonymous SNV	Pramel16:NM_001126315:exon2:c.T596A:p.I199N	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	144159644	12A2p6	cell line	sgMsh2	144159644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	169	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.A383G:p.Q128R	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	144363539	12A2p6	cell line	sgMsh2	144363539	T	G	SNV	Mutect2;Vardict	2	0.037	303	0	0	NA	exonic	Pramel31	nonsynonymous SNV	Pramel31:NM_001034101:exon4:c.T1148G:p.L383R	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	144418410	12A2p6	cell line	sgMsh2	144418410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	54	0	0	NA	exonic	1700012P22Rik	synonymous SNV	1700012P22Rik:NM_027056:exon4:c.C585T:p.R195R	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9957663	AGC	synonymous	NA	NA	NA	NA
M6	chr4	144555570	12A2p6	cell line	sgMsh2	144555570	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	142	0	0	NA	exonic	Aadacl4fm2	synonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.A651G:p.Q217Q	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.9999999	CTT	synonymous	NA	NA	NA	NA
M6	chr4	144715455	12A2p6	cell line	sgMsh2	144715455	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.412	42	0	0	NA	exonic	AAdacl4fm3	frameshift deletion	AAdacl4fm3:NM_001085536:exon2:c.225delT:p.Q76Kfs*2	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr4	144786389	12A2p6	cell line	sgMsh2	144786389	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	99	0	0	NA	exonic	Aadacl4fm5	nonsynonymous SNV	Aadacl4fm5:NM_001126316:exon1:c.C139G:p.H47D	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	TGC	nonsynonymous	ATGCA	11	ATGCAATGCAA	NA
M6	chr4	145065883	12A2p6	cell line	sgMsh2	145065883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	113	37	13	0.351351351	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon57:c.T11276C:p.V3759A,Vps13d:NM_001276465:exon58:c.T11273C:p.V3758A"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	145110843	12A2p6	cell line	sgMsh2	145110843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	35	38	2	0.052631579	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon35:c.T8189C:p.L2730P,Vps13d:NM_001276465:exon36:c.T8189C:p.L2730P"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9853015	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	145156208	12A2p6	cell line	sgMsh2	145156208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	85	15	0	0	exonic	Vps13d	synonymous SNV	"Vps13d:NM_001276502:exon18:c.T2814C:p.S938S,Vps13d:NM_001276465:exon19:c.T2814C:p.S938S"	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994519	TAC	synonymous	NA	NA	NA	NA
M6	chr4	145293180	12A2p6	cell line	sgMsh2	145293180	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	76	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon5:c.A422T:p.K141M	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990071	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	145536879	12A2p6	cell line	sgMsh2	145536879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	626	0	0	NA	exonic	Zfp990	nonsynonymous SNV	Zfp990:NM_001324553:exon4:c.T446C:p.I149T	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	3.13E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr4	147613749	12A2p6	cell line	sgMsh2	147613749	T	G	SNV	Mutect2;MuSe	2	0.13	134	0	0	NA	exonic	Zfp979	nonsynonymous SNV	Zfp979:NM_145078:exon5:c.A502C:p.I168L	4qE1	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.946832	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	148013719	12A2p6	cell line	sgMsh2	148013719	C	A	SNV	Mutect2;Vardict	2	0.047	98	7	0	0	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon17:c.G1753T:p.G585C	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999827	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr4	148016905	12A2p6	cell line	sgMsh2	148016905	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	173	5	1	0.2	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon13:c.T1195A:p.C399S	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	148038747	12A2p6	cell line	sgMsh2	148038747	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	18	5	0	0	exonic	Clcn6	synonymous SNV	Clcn6:NM_011929:exon1:c.C21T:p.S7S	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9560275	CGG	synonymous	C	5	CCCCC	NA
M6	chr4	148038755	12A2p6	cell line	sgMsh2	148038755	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.437	18	3	0	0	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon1:c.A13T:p.R5W	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9560275	CTG	nonsynonymous	C	5	CCCCC	NA
M6	chr4	148500097	12A2p6	cell line	sgMsh2	148500097	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	69	0	0	NA	exonic	Angptl7	nonsynonymous SNV	Angptl7:NM_001039554:exon1:c.T193G:p.W65G	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9690802	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	149237413	12A2p6	cell line	sgMsh2	149237413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	175	29	9	0.310344828	exonic	Kif1b	synonymous SNV	Kif1b:NM_008441:exon21:c.A3048G:p.V1016V	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	GTA	synonymous	NA	NA	NA	NA
M6	chr4	150866443	12A2p6	cell line	sgMsh2	150866443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	141	192	51	0.265625	exonic	Errfi1	synonymous SNV	"Errfi1:NM_001356323:exon4:c.A327G:p.Q109Q,Errfi1:NM_133753:exon4:c.A327G:p.Q109Q"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	AAG	synonymous	NA	NA	NA	NA
M6	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	59	361	96	0.265927978	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416T:p.Y139F	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr4	150929934	12A2p6	cell line	sgMsh2	150929934	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	104	0	0	NA	exonic	Tnfrsf9	nonsynonymous SNV	"Tnfrsf9:NM_001077508:exon2:c.A89G:p.N30S,Tnfrsf9:NM_001077509:exon2:c.A89G:p.N30S,Tnfrsf9:NM_011612:exon2:c.A89G:p.N30S"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9987743	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	151078848	12A2p6	cell line	sgMsh2	151078848	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	63	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon18:c.C4556T:p.S1519F	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.9231077	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr4	151143921	12A2p6	cell line	sgMsh2	151143921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	61	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A2453G:p.Q818R	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.52574661	2	0.9460249	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr4	151145372	12A2p6	cell line	sgMsh2	151145372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	69	0	0	NA	exonic	Camta1	synonymous SNV	Camta1:NM_001081557:exon9:c.A1002G:p.A334A	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9984242	GTG	synonymous	NA	NA	NA	NA
M6	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Vardict	2	0.054	80	9	0	0	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9992537	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr4	152108328	12A2p6	cell line	sgMsh2	152108328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	100	4	1	0.25	exonic	Plekhg5	nonsynonymous SNV	"Plekhg5:NM_001285999:exon14:c.A1750G:p.M584V,Plekhg5:NM_001374783:exon15:c.A1711G:p.M571V"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997965	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr4	152138902	12A2p6	cell line	sgMsh2	152138902	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	26	1	0	0	exonic	Espn	nonsynonymous SNV	Espn:NM_207687:exon4:c.T692G:p.V231G	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9736728	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr4	152312198	12A2p6	cell line	sgMsh2	152312198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	58	0	0	NA	exonic	Rnf207	nonsynonymous SNV	Rnf207:NM_001033489:exon13:c.T1355C:p.L452P	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9967463	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	152377002	12A2p6	cell line	sgMsh2	152377002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	68	1	0	0	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_029216:exon24:c.T3659A:p.I1220N,Chd5:NM_001081376:exon25:c.T3770A:p.I1257N,Chd5:NM_001369243:exon25:c.T3770A:p.I1257N"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9983167	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr4	154033286	12A2p6	cell line	sgMsh2	154033286	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	98	0	0	NA	exonic	Ccdc27	frameshift deletion	Ccdc27:NM_001033455:exon9:c.1465delC:p.L489Wfs*9	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6	chr4	154291064	12A2p6	cell line	sgMsh2	154291064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	39	60	20	0.333333333	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.T472C:p.Y158H	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9886763	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	48	2	1	0.5	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9934991	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	202	16	0	0	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.771467	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr4	155753972	12A2p6	cell line	sgMsh2	155753972	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	127	113	1	0.008849558	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C587T:p.A196V	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999893	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr4	155753982	12A2p6	cell line	sgMsh2	155753982	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	124	113	0	0	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C577G:p.R193G	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999791	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	159	2	0	0	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	2.17E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	156177081	12A2p6	cell line	sgMsh2	156177081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	53	66	12	0.181818182	exonic	Agrn	nonsynonymous SNV	"Agrn:NM_001369026:exon8:c.A1358G:p.E453G,Agrn:NM_021604:exon9:c.A1679G:p.E560G"	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9954785	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr4	156217413	12A2p6	cell line	sgMsh2	156217413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	59	2	2	1	exonic	Perm1	nonsynonymous SNV	Perm1:NM_172417:exon2:c.T413C:p.M138T	4qE2	chr4-3172993-156223608	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9969536	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr4	156233654	12A2p6	cell line	sgMsh2	156233654	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	114	15	5	0.333333333	exonic	Klhl17	nonsynonymous SNV	Klhl17:NM_198305:exon3:c.T421G:p.L141V	4qE2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	191	21	2	0.095238095	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999708	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	3693883	12A2p6	cell line	sgMsh2	3693883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	121	21	3	0.142857143	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001289528:exon18:c.C1584T:p.G528G,Ankib1:NM_001003909:exon19:c.C2406T:p.G802G,Ankib1:NM_001289527:exon19:c.C2424T:p.G808G,Ankib1:NM_001289529:exon19:c.C951T:p.G317G"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	GGC	synonymous	NA	NA	NA	NA
M6	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	144	26	1	0.038461538	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999714	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	153	37	2	0.054054054	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.999974	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	3772546	12A2p6	cell line	sgMsh2	3772546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	243	87	16	0.183908046	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001003909:exon2:c.T159C:p.A53A,Ankib1:NM_001289527:exon2:c.T159C:p.A53A"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.71E-08	CAG	synonymous	NA	NA	NA	NA
M6	chr5	3818616	12A2p6	cell line	sgMsh2	3818616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	101	47	7	0.14893617	exonic	Krit1	nonsynonymous SNV	"Krit1:NM_001170552:exon9:c.A1079G:p.H360R,Krit1:NM_030675:exon9:c.A1079G:p.H360R"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9675169	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	70	67	8	0.119402985	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9686109	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	6770788	12A2p6	cell line	sgMsh2	6770788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	212	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.C2274T:p.C758C	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GGC	synonymous	NA	NA	NA	NA
M6	chr5	6771852	12A2p6	cell line	sgMsh2	6771852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	353	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A1210C:p.R404R	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	CTT	synonymous	NA	NA	NA	NA
M6	chr5	7975687	12A2p6	cell line	sgMsh2	7975687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	219	1	1	1	exonic	Steap4	nonsynonymous SNV	Steap4:NM_054098:exon2:c.A247G:p.R83G	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	8955418	12A2p6	cell line	sgMsh2	8955418	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	133	9	1	0.111111111	exonic	Abcb4	synonymous SNV	Abcb4:NM_008830:exon26:c.C3300T:p.L1100L	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	TCA	synonymous	NA	NA	NA	NA
M6	chr5	8974158	12A2p6	cell line	sgMsh2	8974158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	145	280	56	0.2	exonic	Crot	nonsynonymous SNV	Crot:NM_023733:exon11:c.T1037C:p.V346A	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999896	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	8989678	12A2p6	cell line	sgMsh2	8989678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	278	49	0.176258993	exonic	Crot	nonsynonymous SNV	Crot:NM_023733:exon4:c.A168C:p.Q56H	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999972	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	9118463	12A2p6	cell line	sgMsh2	9118463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	81	35	6	0.171428571	exonic	Tmem243	nonsynonymous SNV	Tmem243:NM_001081029:exon5:c.T244C:p.Y82H	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9673536	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	9422342	12A2p6	cell line	sgMsh2	9422342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	134	0	0	NA	exonic	Elapor2	synonymous SNV	"Elapor2:NM_001359885:exon7:c.T699C:p.T233T,Elapor2:NM_001359886:exon7:c.T699C:p.T233T,Elapor2:NM_001359884:exon8:c.T1038C:p.T346T,Elapor2:NM_172706:exon8:c.T1038C:p.T346T"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999615	CTA	synonymous	NA	NA	NA	NA
M6	chr5	9512114	12A2p6	cell line	sgMsh2	9512114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	232	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.G1735T:p.G579C	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.42E-08	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	9589774	12A2p6	cell line	sgMsh2	9589774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	249	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon2:c.G270T:p.K90N	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.18E-08	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	14679484	12A2p6	cell line	sgMsh2	14679484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	195	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.A8355G:p.L2785L,Pclo:NM_011995:exon5:c.A8355G:p.L2785L"	5qA1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	TAG	synonymous	NA	NA	NA	NA
M6	chr5	16025798	12A2p6	cell line	sgMsh2	16025798	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	171	3	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110843:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110844:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110845:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110846:exon3:c.G227A:p.R76H,Cacna2d1:NM_009784:exon3:c.G227A:p.R76H"	5qA2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999954	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	16246742	12A2p6	cell line	sgMsh2	16246742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	137	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110844:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110845:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110846:exon7:c.T603C:p.P201P,Cacna2d1:NM_009784:exon7:c.T603C:p.P201P"	5qA2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999141	CTA	synonymous	NA	NA	NA	NA
M6	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	90	3	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999011	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	16578469	12A2p6	cell line	sgMsh2	16578469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	190	0	0	NA	exonic	Hgf	nonsynonymous SNV	"Hgf:NM_001289461:exon7:c.A761G:p.N254S,Hgf:NM_001289458:exon8:c.A776G:p.N259S,Hgf:NM_001289459:exon8:c.A776G:p.N259S,Hgf:NM_010427:exon8:c.A776G:p.N259S"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	16618861	12A2p6	cell line	sgMsh2	16618861	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.265	184	0	0	NA	exonic	Hgf	frameshift insertion	"Hgf:NM_001289461:exon18:c.2041dupA:p.M682Nfs*58,Hgf:NM_001289458:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_001289459:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_010427:exon19:c.2056dupA:p.M687Nfs*58"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	ACA	frameshift	NA	NA	NA	1
M6	chr5	19227361	12A2p6	cell line	sgMsh2	19227361	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	45	0	0	NA	exonic	Magi2	nonsynonymous SNV	Magi2:NM_001170746:exon1:c.G73A:p.E25K	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr5	20569240	12A2p6	cell line	sgMsh2	20569240	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	99	0	0	NA	exonic	Magi2	nonsynonymous SNV	"Magi2:NM_001170745:exon14:c.T2197G:p.F733V,Magi2:NM_015823:exon15:c.T2239G:p.F747V,Magi2:NM_001170746:exon16:c.T2728G:p.F910V"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	20886392	12A2p6	cell line	sgMsh2	20886392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	137	94	19	0.20212766	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A154G:p.M52V	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	211	87	9	0.103448276	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	5.33E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	20896261	12A2p6	cell line	sgMsh2	20896261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	173	59	10	0.169491525	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2280C:p.S760S	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	TAC	synonymous	NA	NA	NA	NA
M6	chr5	21303253	12A2p6	cell line	sgMsh2	21303253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	161	0	0	NA	exonic	Ccdc146	nonsynonymous SNV	Ccdc146:NM_029195:exon14:c.A1796G:p.N599S	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	21523589	12A2p6	cell line	sgMsh2	21523589	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	186	0	0	NA	exonic	Fbxl13	synonymous SNV	"Fbxl13:NM_177076:exon14:c.T1501C:p.L501L,Fbxl13:NM_001199632:exon15:c.T1600C:p.L534L"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9990931	AAA	synonymous	AAAGTG	13	AAAGTGAAAGTGA	NA
M6	chr5	21796579	12A2p6	cell line	sgMsh2	21796579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	168	363	65	0.179063361	exonic	Psmc2	synonymous SNV	"Psmc2:NM_001368661:exon4:c.T237C:p.D79D,Psmc2:NM_011188:exon5:c.T237C:p.D79D"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	ATT	synonymous	NA	NA	NA	NA
M6	chr5	22550222	12A2p6	cell line	sgMsh2	22550222	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	126	22	4	0.181818182	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon1:c.A42G:p.Q14Q	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	CTT	synonymous	NA	NA	NA	NA
M6	chr5	22746438	12A2p6	cell line	sgMsh2	22746438	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	67	0	0	NA	exonic	Lhfpl3	synonymous SNV	"Lhfpl3:NM_001081231:exon1:c.G246A:p.R82R,Lhfpl3:NM_001359998:exon1:c.G246A:p.R82R,Lhfpl3:NM_029990:exon1:c.G246A:p.R82R"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	GGG	synonymous	NA	NA	NA	NA
M6	chr5	23502411	12A2p6	cell line	sgMsh2	23502411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	29	46	5	0.108695652	exonic	Kmt2e	synonymous SNV	Kmt2e:NM_026984:exon26:c.A4971G:p.V1657V	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9783057	TAG	synonymous	NA	NA	NA	NA
M6	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	79	5	2	0.4	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	CAC	synonymous	NA	NA	NA	NA
M6	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	53	0	0	NA	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.5929881	CCT	synonymous	NA	NA	NA	NA
M6	chr5	24415437	12A2p6	cell line	sgMsh2	24415437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	63	1	1	1	exonic	Asic3	frameshift deletion	"Asic3:NM_001310474:exon2:c.585delG:p.A197Qfs*76,Asic3:NM_183000:exon2:c.585delG:p.A197Qfs*76"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6	chr5	24440726	12A2p6	cell line	sgMsh2	24440726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	170	163	3	0.018404908	exonic	Slc4a2	nonsynonymous SNV	"Slc4a2:NM_001253892:exon22:c.T3688C:p.Y1230H,Slc4a2:NM_009207:exon23:c.T3688C:p.Y1230H"	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9995268	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	25315222	12A2p6	cell line	sgMsh2	25315222	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	222	32	4	0.125	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon36:c.T5889G:p.P1963P	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GAG	synonymous	NA	NA	NA	NA
M6	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	156	21	2	0.095238095	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.9141382	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	278	16	0	0	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	GAA	synonymous	NA	NA	NA	NA
M6	chr5	27501291	12A2p6	cell line	sgMsh2	27501291	T	C	SNV	Mutect2;MuSe;Vardict	3	0.09	386	0	0	NA	exonic	Speer4b	nonsynonymous SNV	Speer4b:NM_028561:exon1:c.A77G:p.E26G	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.482828519	2	0.9999996	CTC	nonsynonymous	CCTC	10	CCTCCCTCCC	NA
M6	chr5	29435567	12A2p6	cell line	sgMsh2	29435567	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	111	69	10	0.144927536	exonic	Nom1	nonsynonymous SNV	Nom1:NM_001033457:exon1:c.A890T:p.K297I	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9937058	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	30114031	12A2p6	cell line	sgMsh2	30114031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	82	0	0	NA	exonic	Garem2	nonsynonymous SNV	Garem2:NM_001167879:exon4:c.A490G:p.T164A	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	30145301	12A2p6	cell line	sgMsh2	30145301	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	144	277	76	0.274368231	exonic	Hadha	nonsynonymous SNV	Hadha:NM_178878:exon4:c.A248C:p.D83A	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	98	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9876414	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	30534207	12A2p6	cell line	sgMsh2	30534207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	118	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon3:c.T169C:p.S57P	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	30958349	12A2p6	cell line	sgMsh2	30958349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	107	161	19	0.118012422	exonic	Preb	synonymous SNV	"Preb:NM_001294302:exon5:c.A636G:p.T212T,Preb:NM_016703:exon5:c.A636G:p.T212T"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CTG	synonymous	NA	NA	NA	NA
M6	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	128	129	0	0	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9996929	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	31058101	12A2p6	cell line	sgMsh2	31058101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	82	31	4	0.129032258	exonic	Cad	synonymous SNV	"Cad:NM_001289522:exon3:c.A255G:p.G85G,Cad:NM_001289523:exon3:c.A255G:p.G85G,Cad:NM_023525:exon3:c.A255G:p.G85G"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.72960754	2	0.5350983	GAC	synonymous	NA	NA	NA	NA
M6	chr5	31073249	12A2p6	cell line	sgMsh2	31073249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	91	30	8	0.266666667	exonic	Cad	nonsynonymous SNV	"Cad:NM_001289522:exon30:c.A4836G:p.I1612M,Cad:NM_001289523:exon30:c.A4836G:p.I1612M,Cad:NM_023525:exon30:c.A4836G:p.I1612M"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	31109641	12A2p6	cell line	sgMsh2	31109641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	183	0	0	NA	exonic	Dnajc5g	nonsynonymous SNV	"Dnajc5g:NM_001347324:exon3:c.A260G:p.Y87C,Dnajc5g:NM_177677:exon3:c.A260G:p.Y87C"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	31159468	12A2p6	cell line	sgMsh2	31159468	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	132	99	15	0.151515152	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon15:c.C2081T:p.A694V	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.542	115	87	24	0.275862069	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	3	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M6	chr5	31208020	12A2p6	cell line	sgMsh2	31208020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	166	260	40	0.153846154	exonic	Ppm1g	nonsynonymous SNV	Ppm1g:NM_008014:exon3:c.T269C:p.L90P	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999974	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	31246336	12A2p6	cell line	sgMsh2	31246336	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	137	0	0	NA	exonic	Nrbp1	nonsynonymous SNV	Nrbp1:NM_001347326:exon8:c.T676A:p.F226I	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9965224	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr5	31295080	12A2p6	cell line	sgMsh2	31295080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	120	0	0	NA	exonic	Fndc4	nonsynonymous SNV	"Fndc4:NM_001356945:exon3:c.A163G:p.R55G,Fndc4:NM_001356946:exon3:c.A163G:p.R55G,Fndc4:NM_001378890:exon3:c.A163G:p.R55G,Fndc4:NM_022424:exon3:c.A163G:p.R55G"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	31487300	12A2p6	cell line	sgMsh2	31487300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	53	2	0	0	exonic	4930548H24Rik	synonymous SNV	4930548H24Rik:NM_026296:exon2:c.A396G:p.K132K	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.006043231	AAG	synonymous	NA	NA	NA	NA
M6	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Vardict	2	0.054	103	1	0	0	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9998847	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	32262374	12A2p6	cell line	sgMsh2	32262374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	157	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon3:c.T74A:p.I25N	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	32655595	12A2p6	cell line	sgMsh2	32655595	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	190	77	3	0.038961039	exonic	Yes1	nonsynonymous SNV	"Yes1:NM_001205132:exon8:c.T1042C:p.F348L,Yes1:NM_001205133:exon8:c.T1042C:p.F348L,Yes1:NM_009535:exon8:c.T1042C:p.F348L"	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	3.13E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	32827513	12A2p6	cell line	sgMsh2	32827513	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	98	28	0	0	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.T4637C:p.V1546A	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9970497	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	293	26	4	0.153846154	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr5	33147043	12A2p6	cell line	sgMsh2	33147043	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	180	0	0	NA	exonic	Slc5a1	nonsynonymous SNV	Slc5a1:NM_019810:exon9:c.T986C:p.V329A	5qB1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.52E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	34129276	12A2p6	cell line	sgMsh2	34129276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	224	1	0	0	exonic	Poln	nonsynonymous SNV	"Poln:NM_001289803:exon4:c.A547G:p.T183A,Poln:NM_181857:exon4:c.A547G:p.T183A,Poln:NM_001289804:exon5:c.A547G:p.T183A"	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	34650362	12A2p6	cell line	sgMsh2	34650362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	201	104	22	0.211538462	exonic	Nop14	nonsynonymous SNV	Nop14:NM_029278:exon8:c.A1255G:p.K419E	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	213	28	1	0.035714286	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.05E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr5	35087007	12A2p6	cell line	sgMsh2	35087007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	70	0	0	NA	exonic	Dok7	nonsynonymous SNV	"Dok7:NM_172708:exon9:c.T1594C:p.S532P,Dok7:NM_001348478:exon10:c.T1705C:p.S569P"	5qB2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	36824150	12A2p6	cell line	sgMsh2	36824150	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	97	104	20	0.192307692	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon5:c.A622G:p.T208A	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997518	GTG	nonsynonymous	GTGA	8	GTGAGTGA	NA
M6	chr5	37318996	12A2p6	cell line	sgMsh2	37318996	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	69	0	0	NA	exonic	Evc	nonsynonymous SNV	Evc:NM_021292:exon9:c.G1208A:p.G403D	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.5686647	2	0.9690802	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr5	38106637	12A2p6	cell line	sgMsh2	38106637	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	129	42	0	0	exonic	Stx18	frameshift deletion	"Stx18:NM_001359398:exon3:c.264delA:p.R90Efs*13,Stx18:NM_001289535:exon4:c.426delA:p.R144Efs*13,Stx18:NM_026959:exon4:c.426delA:p.R144Efs*13"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr5	38144744	12A2p6	cell line	sgMsh2	38144744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	160	0	0	NA	exonic	Nsg1	nonsynonymous SNV	"Nsg1:NM_001359090:exon3:c.T322C:p.Y108H,Nsg1:NM_001359091:exon4:c.T322C:p.Y108H,Nsg1:NM_001359092:exon4:c.T322C:p.Y108H,Nsg1:NM_010942:exon4:c.T322C:p.Y108H"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	39614551	12A2p6	cell line	sgMsh2	39614551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	135	325	80	0.246153846	exonic	Hs3st1	nonsynonymous SNV	Hs3st1:NM_010474:exon2:c.T748C:p.F250L	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	41794340	12A2p6	cell line	sgMsh2	41794340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	86	65	18	0.276923077	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon25:c.T8727C:p.S2909S,Bod1l:NM_001310601:exon25:c.T8727C:p.S2909S"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CAG	synonymous	NA	NA	NA	NA
M6	chr5	41817204	12A2p6	cell line	sgMsh2	41817204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	262	78	15	0.192307692	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6766T:p.R2256C,Bod1l:NM_001310601:exon10:c.C6766T:p.R2256C"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.58E-09	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	41817776	12A2p6	cell line	sgMsh2	41817776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	126	77	14	0.181818182	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6194T:p.T2065I,Bod1l:NM_001310601:exon10:c.C6194T:p.T2065I"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	44541790	12A2p6	cell line	sgMsh2	44541790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	134	0	0	NA	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon3:c.A305G:p.Y102C,Ldb2:NM_001286348:exon3:c.A305G:p.Y102C,Ldb2:NM_001347349:exon3:c.A305G:p.Y102C,Ldb2:NM_001359070:exon3:c.A305G:p.Y102C,Ldb2:NM_001359071:exon3:c.A305G:p.Y102C,Ldb2:NM_010698:exon3:c.A305G:p.Y102C"	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	45512033	12A2p6	cell line	sgMsh2	45512033	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	265	58	0.218867925	exonic	Lap3	nonsynonymous SNV	Lap3:NM_024434:exon13:c.T1523G:p.I508S	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999244	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	48374537	12A2p6	cell line	sgMsh2	48374537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	144	25	4	0.16	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon3:c.C206A:p.P69H	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999889	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	49987499	12A2p6	cell line	sgMsh2	49987499	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	37	74	15	0.202702703	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon12:c.G1751A:p.S584N	5qB3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9870974	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	52161595	12A2p6	cell line	sgMsh2	52161595	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	140	221	33	0.149321267	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon8:c.G1477A:p.E493K,Dhx15:NM_007839:exon8:c.G1477A:p.E493K"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	52171429	12A2p6	cell line	sgMsh2	52171429	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	83	324	51	0.157407407	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon4:c.T856G:p.L286V,Dhx15:NM_007839:exon4:c.T856G:p.L286V"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.557935178	2	0.9915136	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	52376478	12A2p6	cell line	sgMsh2	52376478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	72	9	3	0.333333333	exonic	Ccdc149	nonsynonymous SNV	"Ccdc149:NM_001256059:exon12:c.A1345T:p.T449S,Ccdc149:NM_001379231:exon13:c.A1378T:p.T460S"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.996628	GTC	nonsynonymous	TCAG	9	TCAGTCAGT	NA
M6	chr5	53200387	12A2p6	cell line	sgMsh2	53200387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	146	68	18	0.264705882	exonic	Sel1l3	nonsynonymous SNV	Sel1l3:NM_172710:exon2:c.T262G:p.F88V	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999903	AAG	nonsynonymous	AAAT	11	AAATAAATAAA	NA
M6	chr5	53642025	12A2p6	cell line	sgMsh2	53642025	T	-	Deletion	Strelka2;Vardict	2	0.181	221	25	0	0	exonic	Rbpj	frameshift deletion	"Rbpj:NM_001080927:exon4:c.157delT:p.C55Afs*37,Rbpj:NM_001080928:exon4:c.151delT:p.C53Afs*37,Rbpj:NM_001359152:exon4:c.157delT:p.C55Afs*37,Rbpj:NM_009035:exon4:c.274delT:p.C94Afs*37,Rbpj:NM_001277116:exon6:c.217delT:p.C75Afs*37"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr5	53642073	12A2p6	cell line	sgMsh2	53642073	A	-	Deletion	Strelka2;Vardict	2	0.1672	317	45	4	0.088888889	exonic	Rbpj	frameshift deletion	"Rbpj:NM_001080927:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_001080928:exon4:c.199delA:p.E70Sfs*20,Rbpj:NM_001359152:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_009035:exon4:c.322delA:p.E111Sfs*20,Rbpj:NM_001277116:exon6:c.265delA:p.E92Sfs*20"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.896988093	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M6	chr5	53700084	12A2p6	cell line	sgMsh2	53700084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	98	0	0	NA	exonic	Cckar	nonsynonymous SNV	"Cckar:NM_001347354:exon5:c.T770C:p.V257A,Cckar:NM_009827:exon5:c.T983C:p.V328A"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9523966	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	202	154	5	0.032467532	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999671	GTT	nonsynonymous	G	5	GGGGG	NA
M6	chr5	57719690	12A2p6	cell line	sgMsh2	57719690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	36	5	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.A586G:p.R196G,Pcdh7:NM_001310606:exon1:c.A586G:p.R196G,Pcdh7:NM_001310608:exon1:c.A586G:p.R196G,Pcdh7:NM_018764:exon1:c.A586G:p.R196G"	5qC1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9862283	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	61809783	12A2p6	cell line	sgMsh2	61809783	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	207	2	0	0	exonic	G6pd2	synonymous SNV	G6pd2:NM_019468:exon1:c.T900C:p.T300T	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999871	CTG	synonymous	NA	NA	NA	NA
M6	chr5	62730687	12A2p6	cell line	sgMsh2	62730687	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	156	35	4	0.114285714	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon6:c.T1315G:p.F439V	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	62730745	12A2p6	cell line	sgMsh2	62730745	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	174	23	3	0.130434783	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon6:c.C1257T:p.C419C	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	AGC	synonymous	NA	NA	NA	NA
M6	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	208	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	63898504	12A2p6	cell line	sgMsh2	63898504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	68	76	25	0.328947368	exonic	0610040J01Rik	synonymous SNV	0610040J01Rik:NM_029554:exon4:c.A582C:p.T194T	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.953742	CAG	synonymous	NA	NA	NA	NA
M6	chr5	64926353	12A2p6	cell line	sgMsh2	64926353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	236	0	0	NA	exonic	Tlr1	nonsynonymous SNV	"Tlr1:NM_030682:exon3:c.A880G:p.M294V,Tlr1:NM_001276445:exon4:c.A880G:p.M294V"	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.65E-08	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	65594882	12A2p6	cell line	sgMsh2	65594882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	228	387	60	0.15503876	exonic	Ube2k	nonsynonymous SNV	"Ube2k:NM_001310618:exon5:c.T383C:p.V128A,Ube2k:NM_001310619:exon6:c.T326C:p.V109A,Ube2k:NM_016786:exon7:c.T536C:p.V179A"	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.43E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	127	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.9935876	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	67398283	12A2p6	cell line	sgMsh2	67398283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	95	8	0	0	exonic	Bend4	nonsynonymous SNV	Bend4:NM_001164806:exon5:c.T1579C:p.S527P	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8536404	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	67611390	12A2p6	cell line	sgMsh2	67611390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	97	0	0	NA	exonic	Shisa3	nonsynonymous SNV	Shisa3:NM_001033415:exon2:c.T632C:p.L211P	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997518	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	68166268	12A2p6	cell line	sgMsh2	68166268	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	160	0	0	NA	exonic	Grxcr1	stopgain	Grxcr1:NM_001018019:exon4:c.C888A:p.C296X	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	170	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.93E-09	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr5	69340751	12A2p6	cell line	sgMsh2	69340751	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	33	0	0	NA	exonic	Kctd8	nonsynonymous SNV	Kctd8:NM_175519:exon1:c.C551T:p.A184V	5qC3.1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9832599	AGC	nonsynonymous	GCC	9	GCCGCCGCC	NA
M6	chr5	72136781	12A2p6	cell line	sgMsh2	72136781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon9:c.T1397C:p.V466A,Gabrb1:NM_001370968:exon10:c.T1298C:p.V433A"	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	183	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	2.84E-08	TAT	synonymous	NA	NA	NA	NA
M6	chr5	73068782	12A2p6	cell line	sgMsh2	73068782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	83	34	6	0.176470588	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon44:c.T5537C:p.L1846P	5qC3.2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	75166548	12A2p6	cell line	sgMsh2	75166548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	164	0	0	NA	exonic	Pdgfra	synonymous SNV	"Pdgfra:NM_001083316:exon4:c.T405C:p.D135D,Pdgfra:NM_001347718:exon4:c.T405C:p.D135D,Pdgfra:NM_001347719:exon4:c.T405C:p.D135D,Pdgfra:NM_011058:exon4:c.T405C:p.D135D"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	ATT	synonymous	NA	NA	NA	NA
M6	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	75620996	12A2p6	cell line	sgMsh2	75620996	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	123	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon6:c.G1084T:p.G362W,Kit:NM_021099:exon6:c.G1084T:p.G362W"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr5	75962720	12A2p6	cell line	sgMsh2	75962720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	134	0	0	NA	exonic	Kdr	nonsynonymous SNV	"Kdr:NM_001363216:exon10:c.T1408C:p.Y470H,Kdr:NM_010612:exon10:c.T1408C:p.Y470H"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9995693	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	143	37	1	0.027027027	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999998	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.342	76	38	5	0.131578947	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M6	chr5	76848823	12A2p6	cell line	sgMsh2	76848823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	53	0	0	NA	exonic	Cracd	synonymous SNV	Cracd:NM_001163793:exon3:c.T127C:p.L43L	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9464314	GTT	synonymous	NA	NA	NA	NA
M6	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Vardict	2	0.041	122	12	0	0	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	0.9999999	ATG	synonymous	NA	NA	NA	NA
M6	chr5	76925791	12A2p6	cell line	sgMsh2	76925791	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	136	126	31	0.246031746	exonic	Ppat	synonymous SNV	Ppat:NM_172146:exon3:c.C285A:p.A95A	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9996053	TGG	synonymous	NA	NA	NA	NA
M6	chr5	77060825	12A2p6	cell line	sgMsh2	77060825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	81	0	0	NA	exonic	Thegl	nonsynonymous SNV	Thegl:NM_027970:exon8:c.T1199C:p.V400A	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9986434	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	77087800	12A2p6	cell line	sgMsh2	77087800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	73	2	0	0	exonic	Hopx	nonsynonymous SNV	"Hopx:NM_001159901:exon2:c.G161A:p.R54H,Hopx:NM_001159900:exon3:c.G161A:p.R54H,Hopx:NM_175606:exon3:c.G161A:p.R54H"	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987897	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	77345396	12A2p6	cell line	sgMsh2	77345396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	167	148	33	0.222972973	exonic	Polr2b	nonsynonymous SNV	Polr2b:NM_153798:exon23:c.T3224C:p.M1075T	5qC3.3	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999976	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	84416382	12A2p6	cell line	sgMsh2	84416382	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	29	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon1:c.C124T:p.L42F	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9783057	AGG	nonsynonymous	G	5	GGGGG	NA
M6	chr5	86045467	12A2p6	cell line	sgMsh2	86045467	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	176	74	14	0.189189189	exonic	Cenpc1	nonsynonymous SNV	"Cenpc1:NM_007683:exon7:c.G562A:p.A188T,Cenpc1:NM_001345902:exon8:c.G829A:p.A277T,Cenpc1:NM_001345903:exon8:c.G466A:p.A156T"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.999822	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	86148870	12A2p6	cell line	sgMsh2	86148870	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	141	59	13	0.220338983	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon11:c.A959T:p.E320V	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	86428627	12A2p6	cell line	sgMsh2	86428627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	151	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon5:c.A364G:p.S122G	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	138	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.12E-08	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr5	86661610	12A2p6	cell line	sgMsh2	86661610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	188	0	0	NA	exonic	Tmprss11b	nonsynonymous SNV	Tmprss11b:NM_177024:exon9:c.A1022G:p.Y341C	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.9342229	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr5	87474945	12A2p6	cell line	sgMsh2	87474945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	142	0	0	NA	exonic	Ugt2a2	nonsynonymous SNV	Ugt2a2:NM_001024148:exon2:c.G163T:p.A55S	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999859	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr5	87587646	12A2p6	cell line	sgMsh2	87587646	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	176	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon3:c.G172A:p.V58M	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9991308	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr5	87587657	12A2p6	cell line	sgMsh2	87587657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	176	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon3:c.T161C:p.I54T	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999807	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	87671530	12A2p6	cell line	sgMsh2	87671530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	219	0	0	NA	exonic	Csn1s1	synonymous SNV	"Csn1s1:NM_001286016:exon8:c.T219C:p.T73T,Csn1s1:NM_007784:exon8:c.T219C:p.T73T"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	0.9807914	CTA	synonymous	NA	NA	NA	NA
M6	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	186	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	177	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.99999	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	161	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9988263	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	87887345	12A2p6	cell line	sgMsh2	87887345	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	41	0	0	NA	exonic	Odam	nonsynonymous SNV	Odam:NM_027128:exon5:c.C167T:p.P56L	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.009936071	CCC	nonsynonymous	TCCCT	10	TCCCTTCCCT	NA
M6	chr5	87980248	12A2p6	cell line	sgMsh2	87980248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	234	0	0	NA	exonic	Cabs1	nonsynonymous SNV	Cabs1:NM_027631:exon1:c.A757G:p.S253G	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.01E-08	AAG	nonsynonymous	ACTAA	10	ACTAAACTAA	NA
M6	chr5	87980456	12A2p6	cell line	sgMsh2	87980456	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	298	0	0	NA	exonic	Cabs1	nonsynonymous SNV	Cabs1:NM_027631:exon1:c.C965T:p.A322V	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.42E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr5	88463329	12A2p6	cell line	sgMsh2	88463329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	91	0	0	NA	exonic	Ambn	nonsynonymous SNV	"Ambn:NM_001303431:exon6:c.A412G:p.T138A,Ambn:NM_009664:exon6:c.A367G:p.T123A"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.998759	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	88502641	12A2p6	cell line	sgMsh2	88502641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	110	0	0	NA	exonic	Enam	nonsynonymous SNV	Enam:NM_017468:exon10:c.A1783G:p.S595G	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	AAG	nonsynonymous	GCAA	8	GCAAGCAA	NA
M6	chr5	88555637	12A2p6	cell line	sgMsh2	88555637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	129	239	57	0.238493724	exonic	Utp3	nonsynonymous SNV	Utp3:NM_023054:exon1:c.A1024G:p.T342A	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.957404	AAC	nonsynonymous	AACCAA	12	AACCAAAACCAA	NA
M6	chr5	88672714	12A2p6	cell line	sgMsh2	88672714	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	118	210	23	0.10952381	exonic	Grsf1	synonymous SNV	"Grsf1:NM_001098476:exon3:c.T207C:p.N69N,Grsf1:NM_178700:exon3:c.T558C:p.N186N"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.6032529	TAT	synonymous	NA	NA	NA	NA
M6	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	142	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999873	AAG	synonymous	NA	NA	NA	NA
M6	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	149	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999992	AAC	synonymous	A	5	AAAAA	NA
M6	chr5	90260161	12A2p6	cell line	sgMsh2	90260161	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	296	201	6	0.029850746	exonic	Ankrd17	nonsynonymous SNV	"Ankrd17:NM_198010:exon22:c.G3443A:p.R1148H,Ankrd17:NM_030886:exon23:c.G4196A:p.R1399H"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	90289329	12A2p6	cell line	sgMsh2	90289329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	157	198	35	0.176767677	exonic	Ankrd17	synonymous SNV	"Ankrd17:NM_030886:exon9:c.T1656C:p.A552A,Ankrd17:NM_198010:exon9:c.T1656C:p.A552A"	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	CAG	synonymous	NA	NA	NA	NA
M6	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	184	7	0	0	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999225	CTG	synonymous	NA	NA	NA	NA
M6	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	153	265	46	0.173584906	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9796786	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	92070423	12A2p6	cell line	sgMsh2	92070423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	138	284	38	0.133802817	exonic	G3bp2	nonsynonymous SNV	"G3bp2:NM_001080794:exon3:c.T111A:p.N37K,G3bp2:NM_001080795:exon3:c.T111A:p.N37K,G3bp2:NM_001080796:exon3:c.T111A:p.N37K,G3bp2:NM_001080797:exon3:c.T111A:p.N37K,G3bp2:NM_001359195:exon3:c.T111A:p.N37K,G3bp2:NM_001359196:exon3:c.T111A:p.N37K,G3bp2:NM_001359197:exon3:c.T111A:p.N37K,G3bp2:NM_011816:exon3:c.T111A:p.N37K"	5qE2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999366	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	92181489	12A2p6	cell line	sgMsh2	92181489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	122	105	12	0.114285714	exonic	Uso1	nonsynonymous SNV	Uso1:NM_019490:exon12:c.T1235C:p.I412T	5qE2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999524	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	305	60	11	0.183333333	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	9.42E-09	CTG	synonymous	NA	NA	NA	NA
M6	chr5	92933813	12A2p6	cell line	sgMsh2	92933813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	83	51	19	0.37254902	exonic	Shroom3	nonsynonymous SNV	Shroom3:NM_015756:exon4:c.A512G:p.Q171R	5qE2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.7708028	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	92941728	12A2p6	cell line	sgMsh2	92941728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	35	44	8	0.181818182	exonic	Shroom3	nonsynonymous SNV	"Shroom3:NM_001077595:exon4:c.A1811G:p.E604G,Shroom3:NM_001077596:exon4:c.A1811G:p.E604G,Shroom3:NM_015756:exon5:c.A2336G:p.E779G"	5qE2	chr5-3344388-93393322	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9839642	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	96131164	12A2p6	cell line	sgMsh2	96131164	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	169	90	18	0.2	exonic	Cnot6l	nonsynonymous SNV	"Cnot6l:NM_001285511:exon3:c.G194A:p.R65H,Cnot6l:NM_144910:exon3:c.G194A:p.R65H,Cnot6l:NM_178854:exon3:c.G209A:p.R70H"	5qE3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	96709879	12A2p6	cell line	sgMsh2	96709879	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	116	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon44:c.A6031T:p.R2011W	5qE3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999875	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	97938118	12A2p6	cell line	sgMsh2	97938118	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	178	153	13	0.08496732	exonic	Antxr2	nonsynonymous SNV	Antxr2:NM_133738:exon16:c.T1394C:p.V465A	5qE3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	100037641	12A2p6	cell line	sgMsh2	100037641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	114	627	135	0.215311005	exonic	Hnrnpdl	nonsynonymous SNV	Hnrnpdl:NM_016690:exon3:c.A701G:p.K234R	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999193	CTT	nonsynonymous	T	5	TTTTT	NA
M6	chr5	100062189	12A2p6	cell line	sgMsh2	100062189	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.063	135	68	0	0	exonic	Enoph1	frameshift deletion	"Enoph1:NM_001163035:exon4:c.427delG:p.M144fs*0,Enoph1:NM_026421:exon4:c.427delG:p.M144fs*0"	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	NA	NA	TGG	frameshift	NA	NA	NA	-1
M6	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	90	183	33	0.180327869	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9994184	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	100485449	12A2p6	cell line	sgMsh2	100485449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	197	30	8	0.266666667	exonic	Lin54	synonymous SNV	"Lin54:NM_001115010:exon2:c.T375C:p.D125D,Lin54:NM_172714:exon2:c.T375C:p.D125D"	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GAT	synonymous	NA	NA	NA	NA
M6	chr5	100533370	12A2p6	cell line	sgMsh2	100533370	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	202	355	68	0.191549296	exonic	Cops4	nonsynonymous SNV	"Cops4:NM_001359203:exon4:c.A386C:p.N129T,Cops4:NM_012001:exon5:c.A539C:p.N180T,Cops4:NM_001359204:exon6:c.A386C:p.N129T"	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9995939	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	100783064	12A2p6	cell line	sgMsh2	100783064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	13	0	0	exonic	Helq	nonsynonymous SNV	Helq:NM_001081107:exon9:c.A1819G:p.T607A	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990705	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	100806887	12A2p6	cell line	sgMsh2	100806887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	39	44	15	0.340909091	exonic	Abraxas1	nonsynonymous SNV	Abraxas1:NM_172405:exon8:c.A685G:p.I229V	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9886763	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr5	101844611	12A2p6	cell line	sgMsh2	101844611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	130	31	7	0.225806452	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon65:c.A10142G:p.H3381R	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999719	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	101849358	12A2p6	cell line	sgMsh2	101849358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	80	33	6	0.181818182	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon61:c.A9400G:p.I3134V	5qE4	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	98	28	2	0.071428571	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9910779	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	181	55	3	0.054545455	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	101951305	12A2p6	cell line	sgMsh2	101951305	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	120	24	4	0.166666667	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon9:c.C876A:p.D292E	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	102892466	12A2p6	cell line	sgMsh2	102892466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	99	2	2	1	exonic	Arhgap24	nonsynonymous SNV	"Arhgap24:NM_001346585:exon6:c.A1277G:p.K426R,Arhgap24:NM_001286468:exon7:c.A1268G:p.K423R,Arhgap24:NM_146161:exon8:c.A1268G:p.K423R,Arhgap24:NM_029270:exon9:c.A1547G:p.K516R"	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.99943	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Vardict	2	0.031	215	87	0	0	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr5	104337342	12A2p6	cell line	sgMsh2	104337342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	0	0	NA	exonic	Mepe	nonsynonymous SNV	Mepe:NM_053172:exon3:c.A347C:p.D116A	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	104478920	12A2p6	cell line	sgMsh2	104478920	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	193	79	1	0.012658228	exonic	Pkd2	stopgain	Pkd2:NM_008861:exon4:c.C967T:p.R323X	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	105015021	12A2p6	cell line	sgMsh2	105015021	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	120	0	0	NA	exonic	Gbp8	frameshift deletion	Gbp8:NM_029509:exon10:c.1506delA:p.K502Nfs*32	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M6	chr5	105118429	12A2p6	cell line	sgMsh2	105118429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	181	0	0	NA	exonic	Gbp4	nonsynonymous SNV	"Gbp4:NM_001359080:exon10:c.T1337C:p.L446P,Gbp4:NM_001359081:exon10:c.T1337C:p.L446P,Gbp4:NM_001256005:exon11:c.T1745C:p.L582P,Gbp4:NM_001359082:exon11:c.T1337C:p.L446P,Gbp4:NM_008620:exon11:c.T1337C:p.L446P,Gbp4:NM_001359079:exon12:c.T1784C:p.L595P"	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	107619891	12A2p6	cell line	sgMsh2	107619891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	84	38	10	0.263157895	exonic	Rpap2	synonymous SNV	"Rpap2:NM_001163461:exon8:c.C594T:p.G198G,Rpap2:NM_001163462:exon8:c.C357T:p.G119G,Rpap2:NM_001289569:exon8:c.C363T:p.G121G,Rpap2:NM_001289570:exon8:c.C594T:p.G198G,Rpap2:NM_001359916:exon8:c.C567T:p.G189G,Rpap2:NM_001359917:exon8:c.C357T:p.G119G,Rpap2:NM_001359918:exon8:c.C357T:p.G119G,Rpap2:NM_144911:exon8:c.C594T:p.G198G"	5qE5	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GCG	synonymous	NA	NA	NA	NA
M6	chr5	107720172	12A2p6	cell line	sgMsh2	107720172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	147	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon5:c.A1031G:p.Q344R,Gfi1:NM_001267621:exon6:c.A1229G:p.Q410R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	107721245	12A2p6	cell line	sgMsh2	107721245	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	48	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon4:c.C802G:p.P268A,Gfi1:NM_001267621:exon5:c.C1000G:p.P334A"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9937198	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	108104296	12A2p6	cell line	sgMsh2	108104296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	98	70	20	0.285714286	exonic	Mtf2	synonymous SNV	"Mtf2:NM_001253880:exon11:c.T991C:p.L331L,Mtf2:NM_001253879:exon13:c.T991C:p.L331L,Mtf2:NM_013827:exon13:c.T1297C:p.L433L,Mtf2:NM_001253877:exon14:c.T991C:p.L331L,Mtf2:NM_001253878:exon14:c.T991C:p.L331L,Mtf2:NM_001359088:exon14:c.T1330C:p.L444L,Mtf2:NM_001359089:exon15:c.T991C:p.L331L"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	GTT	synonymous	NA	NA	NA	NA
M6	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	168	19	2	0.105263158	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	3.59E-08	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.991283	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	108604387	12A2p6	cell line	sgMsh2	108604387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	41	130	16	0.123076923	exonic	Gak	nonsynonymous SNV	"Gak:NM_001359924:exon8:c.A521G:p.N174S,Gak:NM_001282052:exon9:c.A368G:p.N123S,Gak:NM_001282051:exon10:c.A521G:p.N174S,Gak:NM_001359922:exon10:c.A521G:p.N174S,Gak:NM_001359923:exon10:c.A521G:p.N174S,Gak:NM_153569:exon10:c.A1004G:p.N335S"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.009936071	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	108680967	12A2p6	cell line	sgMsh2	108680967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	91	7	0	0	exonic	Idua	nonsynonymous SNV	"Idua:NM_172997:exon8:c.T935G:p.F312C,Idua:NM_008325:exon9:c.T1076G:p.F359C"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	108797917	12A2p6	cell line	sgMsh2	108797917	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	474	0	0	NA	exonic	Vmn2r8	nonsynonymous SNV	Vmn2r8:NM_001104620:exon6:c.A1823T:p.K608M	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	109156479	12A2p6	cell line	sgMsh2	109156479	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	500	0	0	NA	exonic	Vmn2r13	synonymous SNV	"Vmn2r13:NM_001104624:exon6:c.G2085A:p.L695L,Vmn2r13:NM_001384974:exon6:c.G2082A:p.L694L"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CCA	synonymous	NA	NA	NA	NA
M6	chr5	109340546	12A2p6	cell line	sgMsh2	109340546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	257	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon3:c.T1284C:p.S428S,Vmn2r16:NM_001385189:exon3:c.T1284C:p.S428S"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.991722	GTG	synonymous	NA	NA	NA	NA
M6	chr5	109420209	12A2p6	cell line	sgMsh2	109420209	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	45	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon1:c.T197A:p.I66N,Vmn2r17:NM_001385190:exon1:c.T197A:p.I66N"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	110189662	12A2p6	cell line	sgMsh2	110189662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	72	38	8	0.210526316	exonic	Golga3	synonymous SNV	"Golga3:NM_001347389:exon7:c.A1335G:p.L445L,Golga3:NM_008146:exon7:c.A1215G:p.L405L"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987071	TAC	synonymous	NA	NA	NA	NA
M6	chr5	110269678	12A2p6	cell line	sgMsh2	110269678	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.144	24	73	11	0.150684932	exonic	Pgam5	synonymous SNV	"Pgam5:NM_001163538:exon1:c.C162A:p.R54R,Pgam5:NM_028273:exon1:c.C162A:p.R54R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.8367122	CGC	synonymous	NA	NA	NA	NA
M6	chr5	110303958	12A2p6	cell line	sgMsh2	110303958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	152	24	5	0.208333333	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon23:c.A2665G:p.T889A	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999502	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	110325598	12A2p6	cell line	sgMsh2	110325598	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	122	18	0	0	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon39:c.A5257G:p.M1753V	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999928	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	110787217	12A2p6	cell line	sgMsh2	110787217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	58	58	19	0.327586207	exonic	Ulk1	nonsynonymous SNV	"Ulk1:NM_001347394:exon26:c.A2849T:p.Y950F,Ulk1:NM_009469:exon26:c.A2831T:p.Y944F"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9967463	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	113279221	12A2p6	cell line	sgMsh2	113279221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	102	0	0	NA	exonic	Sgsm1	synonymous SNV	"Sgsm1:NM_001309526:exon3:c.C342A:p.S114S,Sgsm1:NM_001309528:exon3:c.C342A:p.S114S,Sgsm1:NM_001162965:exon12:c.C1203A:p.S401S,Sgsm1:NM_001254731:exon12:c.C1203A:p.S401S,Sgsm1:NM_172718:exon12:c.C1203A:p.S401S"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.563299939	2	0.9980295	AGG	synonymous	NA	NA	NA	NA
M6	chr5	114446235	12A2p6	cell line	sgMsh2	114446235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	111	53	12	0.226415094	exonic	Mvk	nonsynonymous SNV	"Mvk:NM_001306205:exon3:c.A155G:p.N52S,Mvk:NM_023556:exon3:c.A155G:p.N52S"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	114611151	12A2p6	cell line	sgMsh2	114611151	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	74	0	0	NA	exonic	Fam222a	nonsynonymous SNV	Fam222a:NM_001004180:exon3:c.C407T:p.S136L	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	114733245	12A2p6	cell line	sgMsh2	114733245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	54	53	14	0.264150943	exonic	Git2	nonsynonymous SNV	"Git2:NM_001077360:exon16:c.A1711G:p.T571A,Git2:NM_001077359:exon17:c.A1714G:p.T572A,Git2:NM_019834:exon17:c.A1798G:p.T600A,Git2:NM_001347400:exon18:c.A1951G:p.T651A"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9773872	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	99	0	0	NA	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9552503	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	114937417	12A2p6	cell line	sgMsh2	114937417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	100	40	26	0.65	exonic	Oasl1	stoploss	"Oasl1:NM_001359946:exon5:c.A998T:p.X333L,Oasl1:NM_001359945:exon6:c.A1535T:p.X512L,Oasl1:NM_145209:exon7:c.A1535T:p.X512L"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997965	TAG	nonsynonymous	AGCT	8	AGCTAGCT	NA
M6	chr5	115127330	12A2p6	cell line	sgMsh2	115127330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	213	58	11	0.189655172	exonic	Unc119b	nonsynonymous SNV	Unc119b:NM_175352:exon3:c.T442C:p.F148L	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999971	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	115295713	12A2p6	cell line	sgMsh2	115295713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	254	71	21	0.295774648	exonic	Coq5	nonsynonymous SNV	Coq5:NM_026504:exon6:c.T818C:p.V273A	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	8.77E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	115341076	12A2p6	cell line	sgMsh2	115341076	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	35	18	6	0.333333333	exonic	Gatc	nonsynonymous SNV	Gatc:NM_029645:exon1:c.A74T:p.N25I	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9853015	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr5	115587846	12A2p6	cell line	sgMsh2	115587846	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	109	53	12	0.226415094	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon17:c.T1670A:p.L557H	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	91	67	5	0.074626866	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.09249834	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	115640184	12A2p6	cell line	sgMsh2	115640184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	91	156	35	0.224358974	exonic	Rab35	nonsynonymous SNV	Rab35:NM_198163:exon3:c.T208C:p.F70L	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	88	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9995504	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	117555453	12A2p6	cell line	sgMsh2	117555453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	53	0	0	NA	exonic	Ksr2	nonsynonymous SNV	Ksr2:NM_001312914:exon4:c.G965A:p.R322H	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9954785	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	118755543	12A2p6	cell line	sgMsh2	118755543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	56	15	2	0.133333333	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon27:c.T5913C:p.A1971A,Med13l:NM_172424:exon27:c.T5886C:p.A1962A"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9962884	CTG	synonymous	NA	NA	NA	NA
M6	chr5	119675671	12A2p6	cell line	sgMsh2	119675671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	172	0	0	NA	exonic	Tbx3	synonymous SNV	"Tbx3:NM_011535:exon4:c.A831G:p.E277E,Tbx3:NM_198052:exon4:c.A771G:p.E257E"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	AAT	synonymous	NA	NA	NA	NA
M6	chr5	120116639	12A2p6	cell line	sgMsh2	120116639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	120	30	6	0.2	exonic	Rbm19	nonsynonymous SNV	Rbm19:NM_028762:exon1:c.T26C:p.L9P	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9970989	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	120609786	12A2p6	cell line	sgMsh2	120609786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	50	35	7	0.2	exonic	Rita1	nonsynonymous SNV	"Rita1:NM_029096:exon3:c.A446G:p.H149R,Rita1:NM_133908:exon4:c.A446G:p.H149R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9944928	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	121384041	12A2p6	cell line	sgMsh2	121384041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	134	25	3	0.12	exonic	Trafd1	nonsynonymous SNV	"Trafd1:NM_001163470:exon2:c.T46C:p.C16R,Trafd1:NM_001359947:exon2:c.T46C:p.C16R,Trafd1:NM_172275:exon2:c.T46C:p.C16R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	121434925	12A2p6	cell line	sgMsh2	121434925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	139	94	12	0.127659574	exonic	Naa25	synonymous SNV	Naa25:NM_172722:exon18:c.T2106C:p.S702S	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999637	GTC	synonymous	NA	NA	NA	NA
M6	chr5	121610131	12A2p6	cell line	sgMsh2	121610131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	210	2	0	0	exonic	Acad12	nonsynonymous SNV	Acad12:NM_178799:exon3:c.A223C:p.K75Q	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	121817963	12A2p6	cell line	sgMsh2	121817963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	64	28	5	0.178571429	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon8:c.A1425G:p.P475P,Sh2b3:NM_008507:exon8:c.A1455G:p.P485P,Sh2b3:NM_001306126:exon9:c.A1455G:p.P485P,Sh2b3:NM_001306127:exon9:c.A1455G:p.P485P"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	GTG	synonymous	NA	NA	NA	NA
M6	chr5	122102770	12A2p6	cell line	sgMsh2	122102770	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	153	0	0	NA	exonic	Myl2	synonymous SNV	"Myl2:NM_001384326:exon3:c.A168G:p.L56L,Myl2:NM_010861:exon3:c.A168G:p.L56L,Myl2:NM_001384330:exon5:c.A111G:p.L37L,Myl2:NM_001384327:exon6:c.A111G:p.L37L,Myl2:NM_001384331:exon6:c.A111G:p.L37L,Myl2:NM_001384329:exon7:c.A111G:p.L37L,Myl2:NM_001384328:exon8:c.A111G:p.L37L"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999939	TAG	synonymous	NA	NA	NA	NA
M6	chr5	122334415	12A2p6	cell line	sgMsh2	122334415	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	183	3	1	0.333333333	exonic	Rad9b	nonsynonymous SNV	"Rad9b:NM_001382853:exon7:c.C682G:p.L228V,Rad9b:NM_144912:exon7:c.C682G:p.L228V"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9929146	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	122439459	12A2p6	cell line	sgMsh2	122439459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	82	57	14	0.245614035	exonic	Anapc7	nonsynonymous SNV	Anapc7:NM_019805:exon8:c.T1076C:p.I359T	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	122559719	12A2p6	cell line	sgMsh2	122559719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	215	41	14	0.341463415	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon15:c.A1475G:p.H492R,Ift81:NM_001358917:exon16:c.A1694G:p.H565R,Ift81:NM_001358918:exon16:c.A1526G:p.H509R,Ift81:NM_009879:exon16:c.A1694G:p.H565R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.9932363	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	93	7	0	0	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9995149	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	122883335	12A2p6	cell line	sgMsh2	122883335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	63	33	1	0.03030303	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001378864:exon3:c.A407G:p.H136R,Kdm2b:NM_001378865:exon3:c.A407G:p.H136R,Kdm2b:NM_013910:exon3:c.A407G:p.H136R,Kdm2b:NM_001003953:exon14:c.A2006G:p.H669R,Kdm2b:NM_001378863:exon14:c.A1988G:p.H663R"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	123029094	12A2p6	cell line	sgMsh2	123029094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	35	9	0.257142857	exonic	Orai1	nonsynonymous SNV	Orai1:NM_175423:exon2:c.A329G:p.Q110R	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	123039332	12A2p6	cell line	sgMsh2	123039332	A	G	SNV	Mutect2;Vardict	2	0.073	61	0	0	NA	exonic	Morn3	nonsynonymous SNV	"Morn3:NM_001347456:exon3:c.T388C:p.Y130H,Morn3:NM_029112:exon3:c.T388C:p.Y130H"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.8532702	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	123148147	12A2p6	cell line	sgMsh2	123148147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	9	6	3	0.5	exonic	Setd1b	nonsynonymous SNV	Setd1b:NM_001040398:exon6:c.T1255C:p.F419L	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9178809	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	123182676	12A2p6	cell line	sgMsh2	123182676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	189	0	0	NA	exonic	Hpd	nonsynonymous SNV	Hpd:NM_008277:exon1:c.A1C:p.M1L	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	123646269	12A2p6	cell line	sgMsh2	123646269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	93	69	13	0.188405797	exonic	Clip1	synonymous SNV	"Clip1:NM_001291229:exon5:c.T816C:p.A272A,Clip1:NM_001347468:exon5:c.T816C:p.A272A,Clip1:NM_001359220:exon5:c.T816C:p.A272A,Clip1:NM_001359221:exon5:c.T816C:p.A272A,Clip1:NM_001359222:exon5:c.T816C:p.A272A,Clip1:NM_001359223:exon5:c.T816C:p.A272A,Clip1:NM_001359224:exon5:c.T816C:p.A272A,Clip1:NM_019765:exon5:c.T816C:p.A272A"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996768	GAG	synonymous	NA	NA	NA	NA
M6	chr5	123729278	12A2p6	cell line	sgMsh2	123729278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	144	231	55	0.238095238	exonic	Rsrc2	nonsynonymous SNV	"Rsrc2:NM_001005525:exon10:c.A1204G:p.N402D,Rsrc2:NM_001359864:exon10:c.A1201G:p.N401D,Rsrc2:NM_025438:exon11:c.A1030G:p.N344D,Rsrc2:NM_001359861:exon12:c.A1030G:p.N344D,Rsrc2:NM_001359866:exon12:c.A1027G:p.N343D,Rsrc2:NM_001359860:exon13:c.A1030G:p.N344D,Rsrc2:NM_001359865:exon13:c.A1027G:p.N343D"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999889	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	147	16	5	0.3125	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999374	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Vardict	2	0.037	176	34	0	0	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	89	24	9	0.375	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr5	123802402	12A2p6	cell line	sgMsh2	123802402	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	81	34	8	0.235294118	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon48:c.G5062A:p.A1688T	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	95	3	0	0	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9997792	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	124123998	12A2p6	cell line	sgMsh2	124123998	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	67	3	0	0	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon18:c.C2779T:p.H927Y,Pitpnm2:NM_011256:exon18:c.C2617T:p.H873Y"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	183	166	6	0.036144578	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9940171	TAC	synonymous	NA	NA	NA	NA
M6	chr5	124410263	12A2p6	cell line	sgMsh2	124410263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	119	212	31	0.146226415	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon4:c.T354G:p.T118T,Sbno1:NM_001359978:exon4:c.T354G:p.T118T,Sbno1:NM_001359979:exon4:c.T351G:p.T117T"	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	AAG	synonymous	NA	NA	NA	NA
M6	chr5	124646720	12A2p6	cell line	sgMsh2	124646720	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	63	11	0.174603175	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon9:c.G942C:p.M314I	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr5	124800930	12A2p6	cell line	sgMsh2	124800930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	178	1	0	0	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon47:c.A8078G:p.K2693R	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999975	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	124832622	12A2p6	cell line	sgMsh2	124832622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	156	1	0	0	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon77:c.C13475T:p.A4492V	5qF	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999995	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	125011324	12A2p6	cell line	sgMsh2	125011324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	84	2	2	1	exonic	Rflna	nonsynonymous SNV	Rflna:NM_028443:exon3:c.T334C:p.F112L	5qG1.1	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9992761	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	125048197	12A2p6	cell line	sgMsh2	125048197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	48	111	23	0.207207207	exonic	Ncor2	synonymous SNV	"Ncor2:NM_001253905:exon17:c.G1890A:p.E630E,Ncor2:NM_001253904:exon21:c.G2022A:p.E674E,Ncor2:NM_011424:exon21:c.G2547A:p.E849E"	5qG1.1	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	CCT	synonymous	NA	NA	NA	NA
M6	chr5	125622767	12A2p6	cell line	sgMsh2	125622767	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	103	15	4	0.266666667	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon2:c.T368A:p.L123H	5qG1.1	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9998201	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	127359899	12A2p6	cell line	sgMsh2	127359899	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	172	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon2:c.C451G:p.H151D	5qG1.2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr5	127563252	12A2p6	cell line	sgMsh2	127563252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	99	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon9:c.A2486G:p.D829G	5qG1.2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	127650704	12A2p6	cell line	sgMsh2	127650704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	122	0	0	NA	exonic	Glt1d1	nonsynonymous SNV	Glt1d1:NM_177005:exon3:c.T239C:p.V80A	5qG1.2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9996238	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	128601785	12A2p6	cell line	sgMsh2	128601785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	42	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.C568T:p.R190C	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9906932	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	128601801	12A2p6	cell line	sgMsh2	128601801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	49	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A584G:p.N195S	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	128602175	12A2p6	cell line	sgMsh2	128602175	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.T958G:p.F320V	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999583	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	128986369	12A2p6	cell line	sgMsh2	128986369	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	154	45	15	0.333333333	exonic	Stx2	nonsynonymous SNV	"Stx2:NM_001286033:exon10:c.C851T:p.A284V,Stx2:NM_001286034:exon10:c.C764T:p.A255V"	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	129908839	12A2p6	cell line	sgMsh2	129908839	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	0	0	NA	exonic	Nupr1l	nonsynonymous SNV	"Nupr1l:NM_001359308:exon1:c.A248C:p.N83T,Nupr1l:NM_026916:exon1:c.A248C:p.N83T"	5qG1.3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9613148	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	130877695	12A2p6	cell line	sgMsh2	130877695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	75	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1634G:p.K545R	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.8205809	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	131086045	12A2p6	cell line	sgMsh2	131086045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	76	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon4:c.T616C:p.Y206H	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	134135628	12A2p6	cell line	sgMsh2	134135628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	85	11	2	0.181818182	exonic	Castor2	nonsynonymous SNV	Castor2:NM_030719:exon4:c.T427C:p.F143L	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994519	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	113	21	7	0.333333333	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	134243910	12A2p6	cell line	sgMsh2	134243910	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	77	492	85	0.172764228	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080749:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359066:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359067:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080747:exon26:c.A2404C:p.S802R,Gtf2i:NM_001359063:exon26:c.A2410C:p.S804R,Gtf2i:NM_001359065:exon26:c.A2404C:p.S802R,Gtf2i:NM_010365:exon26:c.A2410C:p.S804R,Gtf2i:NM_001080746:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359062:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359064:exon27:c.A2410C:p.S804R"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990705	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	134597889	12A2p6	cell line	sgMsh2	134597889	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	151	60	15	0.25	exonic	Rfc2	nonsynonymous SNV	Rfc2:NM_020022:exon11:c.A980G:p.N327S	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	135064529	12A2p6	cell line	sgMsh2	135064529	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.26	51	18	0	0	exonic	Bud23;Dnajc30	frameshift insertion	"Bud23:NM_001363325:exon1:c.14dupA:p.T6Dfs*6,Dnajc30:NM_025362:exon1:c.280dupT:p.L94Ffs*10"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	TCT	frameshift	NA	NA	NA	1
M6	chr5	135217467	12A2p6	cell line	sgMsh2	135217467	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	98	154	36	0.233766234	exonic	Baz1b	nonsynonymous SNV	Baz1b:NM_011714:exon7:c.A1769C:p.N590T	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	135734871	12A2p6	cell line	sgMsh2	135734871	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.172	113	219	55	0.251141553	exonic	Por	nonsynonymous SNV	Por:NM_008898:exon16:c.T1951G:p.F651V	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9983811	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	135734873	12A2p6	cell line	sgMsh2	135734873	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.173	113	216	53	0.24537037	exonic	Por	synonymous SNV	Por:NM_008898:exon16:c.T1953C:p.F651F	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9986791	TTG	synonymous	NA	NA	NA	NA
M6	chr5	135967893	12A2p6	cell line	sgMsh2	135967893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	48	0	0	NA	exonic	Ssc4d	nonsynonymous SNV	Ssc4d:NM_001160366:exon4:c.T353C:p.V118A	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	215	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr5	136091264	12A2p6	cell line	sgMsh2	136091264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	39	13	1	0.076923077	exonic	Rasa4	nonsynonymous SNV	"Rasa4:NM_001039103:exon3:c.T193C:p.F65L,Rasa4:NM_133914:exon3:c.T193C:p.F65L"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9886763	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	136224301	12A2p6	cell line	sgMsh2	136224301	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	59	0	0	NA	exonic	Sh2b2	nonsynonymous SNV	"Sh2b2:NM_001302938:exon6:c.A1016T:p.E339V,Sh2b2:NM_001302939:exon6:c.A1016T:p.E339V,Sh2b2:NM_018825:exon6:c.A1016T:p.E339V"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M6	chr5	136360024	12A2p6	cell line	sgMsh2	136360024	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	146	217	0	0	exonic	Cux1	nonsynonymous SNV	"Cux1:NM_001291233:exon8:c.T940C:p.Y314H,Cux1:NM_001291234:exon8:c.T685C:p.Y229H,Cux1:NM_001291238:exon8:c.T685C:p.Y229H,Cux1:NM_001291239:exon8:c.T940C:p.Y314H,Cux1:NM_001291240:exon8:c.T940C:p.Y314H,Cux1:NM_009986:exon8:c.T685C:p.Y229H,Cux1:NM_198602:exon8:c.T685C:p.Y229H"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	6.96E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	137300090	12A2p6	cell line	sgMsh2	137300090	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	95	153	30	0.196078431	exonic	Srrt	synonymous SNV	"Srrt:NM_001109909:exon7:c.G819A:p.E273E,Srrt:NM_001109910:exon7:c.G819A:p.E273E,Srrt:NM_001359602:exon7:c.G819A:p.E273E,Srrt:NM_031405:exon7:c.G819A:p.E273E"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.7772382	CCT	synonymous	TCC	16	TCCTCCTCCTCCTCCT	NA
M6	chr5	137555077	12A2p6	cell line	sgMsh2	137555077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	102	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon4:c.T350C:p.V117A	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr5	137580217	12A2p6	cell line	sgMsh2	137580217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	90	0	0	NA	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon10:c.G1306A:p.A436T,Tfr2:NM_001289511:exon11:c.G1306A:p.A436T,Tfr2:NM_001359206:exon11:c.G1306A:p.A436T,Tfr2:NM_001289509:exon12:c.G1306A:p.A436T,Tfr2:NM_015799:exon12:c.G1306A:p.A436T"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9994184	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	137587025	12A2p6	cell line	sgMsh2	137587025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.156	47	1	0	0	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon18:c.T2318C:p.L773P,Tfr2:NM_001289511:exon19:c.T2318C:p.L773P,Tfr2:NM_001359206:exon19:c.T2318C:p.L773P,Tfr2:NM_001289509:exon20:c.T2318C:p.L773P,Tfr2:NM_015799:exon20:c.T2318C:p.L773P"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9184891	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	126	2	0	0	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9981283	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	137857515	12A2p6	cell line	sgMsh2	137857515	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	213	12	1	0.083333333	exonic	Pilrb1	frameshift deletion	Pilrb1:NM_133209:exon2:c.113delA:p.N38Mfs*36	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr5	138179501	12A2p6	cell line	sgMsh2	138179501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	31	147	26	0.176870748	exonic	Taf6	nonsynonymous SNV	"Taf6:NM_001356600:exon14:c.C1568T:p.A523V,Taf6:NM_001356601:exon14:c.C1568T:p.A523V,Taf6:NM_001356602:exon14:c.C1568T:p.A523V,Taf6:NM_009315:exon14:c.C1568T:p.A523V"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.09604479	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr5	138183578	12A2p6	cell line	sgMsh2	138183578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	63	60	7	0.116666667	exonic	Taf6	synonymous SNV	"Taf6:NM_001356600:exon4:c.C387T:p.V129V,Taf6:NM_001356601:exon4:c.C387T:p.V129V,Taf6:NM_001356602:exon4:c.C387T:p.V129V,Taf6:NM_009315:exon4:c.C387T:p.V129V"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	AGA	synonymous	NA	NA	NA	NA
M6	chr5	138646905	12A2p6	cell line	sgMsh2	138646905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	88	28	8	0.285714286	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1051G:p.T351A	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	138647722	12A2p6	cell line	sgMsh2	138647722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	115	15	5	0.333333333	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1868G:p.Y623C	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	138755649	12A2p6	cell line	sgMsh2	138755649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	68	24	9	0.375	exonic	Fam20c	nonsynonymous SNV	Fam20c:NM_030565:exon1:c.T14C:p.L5P	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9983167	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	139050736	12A2p6	cell line	sgMsh2	139050736	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	57	8	0	0	exonic	Prkar1b	frameshift deletion	"Prkar1b:NM_001359101:exon6:c.258delC:p.R87Efs*4,Prkar1b:NM_001253890:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359097:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359098:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359099:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359100:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_008923:exon7:c.630delC:p.R211Efs*4"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr5	139152877	12A2p6	cell line	sgMsh2	139152877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	126	14	0	0	exonic	Dnaaf5	nonsynonymous SNV	Dnaaf5:NM_001081265:exon3:c.T812C:p.L271P	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	154	44	11	0.25	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999943	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	139235573	12A2p6	cell line	sgMsh2	139235573	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	92	142	29	0.204225352	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon9:c.C1042T:p.H348Y,Sun1:NM_001256117:exon11:c.C1141T:p.H381Y,Sun1:NM_001359496:exon12:c.C1207T:p.H403Y,Sun1:NM_001256115:exon13:c.C1399T:p.H467Y,Sun1:NM_001256116:exon13:c.C1318T:p.H440Y,Sun1:NM_001359494:exon13:c.C1318T:p.H440Y,Sun1:NM_024451:exon14:c.C1510T:p.H504Y"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr5	139263481	12A2p6	cell line	sgMsh2	139263481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	93	71	15	0.211267606	exonic	Get4	nonsynonymous SNV	"Get4:NM_001163316:exon4:c.A160G:p.N54D,Get4:NM_001359238:exon4:c.A316G:p.N106D,Get4:NM_026269:exon4:c.A319G:p.N107D"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr5	139392809	12A2p6	cell line	sgMsh2	139392809	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	150	8	1	0.125	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T365C:p.L122P,Gpr146:NM_001362206:exon2:c.T365C:p.L122P,Gpr146:NM_030258:exon2:c.T365C:p.L122P"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	CTG	nonsynonymous	CACTG	11	CACTGCACTGC	NA
M6	chr5	139392815	12A2p6	cell line	sgMsh2	139392815	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	156	9	1	0.111111111	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T371G:p.L124R,Gpr146:NM_001362206:exon2:c.T371G:p.L124R,Gpr146:NM_030258:exon2:c.T371G:p.L124R"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999995	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	139716647	12A2p6	cell line	sgMsh2	139716647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	140	13	2	0.153846154	exonic	Micall2	synonymous SNV	Micall2:NM_174850:exon6:c.T840C:p.N280N	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.988776	CAT	synonymous	NA	NA	NA	NA
M6	chr5	139806938	12A2p6	cell line	sgMsh2	139806938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	88	15	7	0.466666667	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon6:c.A790G:p.I264V,Tmem184a:NM_001161548:exon7:c.A862G:p.I288V"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	139813029	12A2p6	cell line	sgMsh2	139813030	CT	GC	DBS	Mutect2;Vardict	2	0.215	74	10	8	0.8	exonic	Tmem184a	nonframeshift substitution	"Tmem184a:NM_144914:exon1:c.163_164GC:p.S55A,Tmem184a:NM_001161548:exon2:c.235_236GC:p.S79A"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	102	82	1	0.012195122	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.6478976	CTT	synonymous	NA	NA	NA	NA
M6	chr5	140665374	12A2p6	cell line	sgMsh2	140665374	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	88	23	2	0.086956522	exonic	Iqce	nonsynonymous SNV	"Iqce:NM_001347517:exon23:c.C2278T:p.P760S,Iqce:NM_028833:exon23:c.C2329T:p.P777S"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr5	140718582	12A2p6	cell line	sgMsh2	140718582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	42	39	6	0.153846154	exonic	Brat1	synonymous SNV	"Brat1:NM_001276287:exon14:c.A2589G:p.E863E,Brat1:NM_181066:exon14:c.A2454G:p.E818E"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.8331894	AAG	synonymous	NA	NA	NA	NA
M6	chr5	141953112	12A2p6	cell line	sgMsh2	141953112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	67	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon9:c.T1289C:p.L430S	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	1	0.5871402	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr5	142161926	12A2p6	cell line	sgMsh2	142161926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	58	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon37:c.A5312G:p.K1771R	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9967463	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	142451467	12A2p6	cell line	sgMsh2	142451467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	129	72	12	0.166666667	exonic	Foxk1	nonsynonymous SNV	Foxk1:NM_199068:exon5:c.A1037G:p.N346S	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	142472335	12A2p6	cell line	sgMsh2	142472335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	21	3	0.142857143	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon10:c.A1262C:p.D421A	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9954047	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	142477436	12A2p6	cell line	sgMsh2	142477436	C	T	SNV	Mutect2;Vardict	2	0.078	56	24	1	0.041666667	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon17:c.C2374T:p.R792C	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6746768	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	143202035	12A2p6	cell line	sgMsh2	143202035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	183	0	0	NA	exonic	Spdye4b	nonsynonymous SNV	"Spdye4b:NM_001384193:exon6:c.T473C:p.M158T,Spdye4b:NM_177880:exon6:c.T443C:p.M148T"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	ATG	nonsynonymous	GGA	9	GGAGGAGGA	NA
M6	chr5	143254581	12A2p6	cell line	sgMsh2	143254581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	48	14	6	0.428571429	exonic	Zfp316	nonsynonymous SNV	Zfp316:NM_017467:exon7:c.A1682G:p.D561G	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9937198	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Vardict	2	0.087	45	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr5	144001449	12A2p6	cell line	sgMsh2	144001449	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	124	277	38	0.137184116	exonic	Ccz1	synonymous SNV	Ccz1:NM_177682:exon8:c.A702T:p.L234L	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999583	CTA	synonymous	NA	NA	NA	NA
M6	chr5	144553422	12A2p6	cell line	sgMsh2	144553422	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	59	0	0	NA	exonic	Nptx2	synonymous SNV	Nptx2:NM_016789:exon3:c.A660T:p.P220P	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CAG	synonymous	NA	NA	NA	NA
M6	chr5	144834242	12A2p6	cell line	sgMsh2	144834242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	213	51	8	0.156862745	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon55:c.A8393G:p.Y2798C	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	144857455	12A2p6	cell line	sgMsh2	144857455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	114	93	29	0.311827957	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon70:c.A11135G:p.N3712S	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr5	145044767	12A2p6	cell line	sgMsh2	145044767	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.134	202	0	0	NA	exonic	1700018F24Rik	frameshift deletion	1700018F24Rik:NM_027069:exon4:c.411delT:p.F139Lfs*8	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr5	145096078	12A2p6	cell line	sgMsh2	145096078	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	74	238	19	0.079831933	exonic	Arpc1a	nonsynonymous SNV	Arpc1a:NM_019767:exon4:c.C196T:p.R66C	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9517726	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr5	145187147	12A2p6	cell line	sgMsh2	145187147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	164	559	108	0.193202147	exonic	Atp5j2	nonsynonymous SNV	Atp5j2:NM_020582:exon2:c.A100G:p.I34V	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	145218650	12A2p6	cell line	sgMsh2	145218650	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	85	20	3	0.15	exonic	Zkscan5	nonsynonymous SNV	"Zkscan5:NM_001167944:exon3:c.G911A:p.S304N,Zkscan5:NM_001359190:exon3:c.G464A:p.S155N,Zkscan5:NM_001359192:exon3:c.G911A:p.S304N,Zkscan5:NM_001359187:exon5:c.G1085A:p.S362N,Zkscan5:NM_001359188:exon5:c.G683A:p.S228N,Zkscan5:NM_001359189:exon5:c.G569A:p.S190N,Zkscan5:NM_001359191:exon5:c.G1130A:p.S377N,Zkscan5:NM_016683:exon5:c.G1130A:p.S377N"	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9738125	AGC	nonsynonymous	A	5	AAAAA	NA
M6	chr5	145779670	12A2p6	cell line	sgMsh2	145779670	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	283	0	0	NA	exonic	Cyp3a44	nonsynonymous SNV	Cyp3a44:NM_177380:exon11:c.T1109C:p.I370T	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	145865954	12A2p6	cell line	sgMsh2	145865954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	165	0	0	NA	exonic	Cyp3a11	nonsynonymous SNV	Cyp3a11:NM_007818:exon8:c.A728G:p.K243R	5qG2	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999972	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	260	52	12	0.230769231	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9996075	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr5	146955155	12A2p6	cell line	sgMsh2	146955155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	128	125	24	0.192	exonic	Gtf3a	nonsynonymous SNV	Gtf3a:NM_025652:exon8:c.A899C:p.D300A	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr5	149453408	12A2p6	cell line	sgMsh2	149453408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	149	0	0	NA	exonic	Tex26	synonymous SNV	"Tex26:NM_001310765:exon2:c.A6G:p.V2V,Tex26:NM_001310763:exon3:c.A258G:p.V86V,Tex26:NM_001310764:exon3:c.A6G:p.V2V,Tex26:NM_029464:exon3:c.A261G:p.V87V"	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	TAA	synonymous	A	5	AAAAA	NA
M6	chr5	150378979	12A2p6	cell line	sgMsh2	150378979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	51	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon15:c.A1650G:p.I550M	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9948431	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	150554424	12A2p6	cell line	sgMsh2	150554424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	94	5	2	0.4	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon18:c.A8009G:p.Q2670R,Brca2:NM_009765:exon18:c.A8009G:p.Q2670R"	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9200232	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr5	150988521	12A2p6	cell line	sgMsh2	150988521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	157	0	0	NA	exonic	Kl	synonymous SNV	Kl:NM_013823:exon4:c.T1734C:p.S578S	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.5048301	CTG	synonymous	NA	NA	NA	NA
M6	chr5	151645654	12A2p6	cell line	sgMsh2	151645654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	94	58	2	0.034482759	exonic	Rfc3	nonsynonymous SNV	Rfc3:NM_027009:exon5:c.A437T:p.H146L	5qG3	chr5-95958329-151647482	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	107	65	4	0.061538462	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M6	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	212	33	2	0.060606061	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr6	3532184	12A2p6	cell line	sgMsh2	3532184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	180	56	8	0.142857143	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon10:c.C686A:p.T229N,Vps50:NM_001167751:exon10:c.C686A:p.T229N,Vps50:NM_024260:exon10:c.C686A:p.T229N"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.09565244	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr6	4532747	12A2p6	cell line	sgMsh2	4532747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	238	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon39:c.A2371G:p.M791V	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	2.34E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	4539480	12A2p6	cell line	sgMsh2	4539480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	91	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon51:c.A3747G:p.E1249E	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	AAG	synonymous	NA	NA	NA	NA
M6	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	218	14	0	0	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	TGC	synonymous	NA	NA	NA	NA
M6	chr6	4905506	12A2p6	cell line	sgMsh2	4905506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	83	11	4	0.363636364	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon2:c.G60A:p.R20R,Ppp1r9a:NM_181595:exon2:c.G60A:p.R20R"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	GGA	synonymous	NA	NA	NA	NA
M6	chr6	5230455	12A2p6	cell line	sgMsh2	5230455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	160	61	18	0.295081967	exonic	Pon3	synonymous SNV	"Pon3:NM_001363812:exon8:c.C633T:p.H211H,Pon3:NM_173006:exon8:c.C852T:p.H284H"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9997538	GGT	synonymous	NA	NA	NA	NA
M6	chr6	5496078	12A2p6	cell line	sgMsh2	5496078	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	29	0	0	NA	exonic	Pdk4	nonsynonymous SNV	Pdk4:NM_013743:exon1:c.C85G:p.R29G	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9783057	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	5972208	12A2p6	cell line	sgMsh2	5972208	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	61	0	0	NA	exonic	Dync1i1	nonsynonymous SNV	"Dync1i1:NM_001191023:exon13:c.A1499C:p.K500T,Dync1i1:NM_001191025:exon13:c.A1448C:p.K483T,Dync1i1:NM_001191027:exon13:c.A1415C:p.K472T,Dync1i1:NM_001191026:exon14:c.A1475C:p.K492T,Dync1i1:NM_010063:exon14:c.A1508C:p.K503T"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8455115	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	6113973	12A2p6	cell line	sgMsh2	6113973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	100	28	1	0.035714286	exonic	Slc25a13	nonsynonymous SNV	"Slc25a13:NM_001177572:exon9:c.A898C:p.M300L,Slc25a13:NM_015829:exon9:c.A898C:p.M300L"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997965	ATT	nonsynonymous	TTCC	9	TTCCTTCCT	NA
M6	chr6	6152512	12A2p6	cell line	sgMsh2	6152512	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	86	24	0	0	exonic	Slc25a13	frameshift deletion	"Slc25a13:NM_001177572:exon4:c.224delT:p.F75Sfs*4,Slc25a13:NM_015829:exon4:c.224delT:p.F75Sfs*4"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr6	6878375	12A2p6	cell line	sgMsh2	6878375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	63	0	0	NA	exonic	Dlx5	synonymous SNV	Dlx5:NM_010056:exon3:c.A654G:p.P218P	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	GTG	synonymous	NA	NA	NA	NA
M6	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	159	229	15	0.065502183	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9998505	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr6	7863979	12A2p6	cell line	sgMsh2	7863979	T	-	Deletion	Strelka2;Vardict	2	0.202	99	123	12	0.097560976	exonic	C1galt1	frameshift deletion	C1galt1:NM_052993:exon2:c.58delT:p.L22Yfs*5	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M6	chr6	8013113	12A2p6	cell line	sgMsh2	8013113	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	90	0	0	NA	exonic	Col28a1	frameshift deletion	Col28a1:NM_001037865:exon33:c.2938delA:p.I980Ffs*58	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1852	108	51	2	0.039215686	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.993553797	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M6	chr6	12320949	12A2p6	cell line	sgMsh2	12320949	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	87	2	1	0.5	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon25:c.G4726T:p.A1576S	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9931539	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	12555638	12A2p6	cell line	sgMsh2	12555638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon2:c.T246C:p.T82T	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996768	TAG	synonymous	NA	NA	NA	NA
M6	chr6	13185194	12A2p6	cell line	sgMsh2	13185194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	140	0	0	NA	exonic	Vwde	nonsynonymous SNV	Vwde:NM_001368871:exon13:c.T2768C:p.I923T	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	205	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	103	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8952979	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	13591542	12A2p6	cell line	sgMsh2	13591542	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	48	62	11	0.177419355	exonic	Tmem168	nonsynonymous SNV	Tmem168:NM_028990:exon4:c.C1274A:p.P425H	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	15799800	12A2p6	cell line	sgMsh2	15799800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	205	59	10	0.169491525	exonic	Mdfic	nonsynonymous SNV	Mdfic:NM_175088:exon5:c.T679C:p.C227R	6qA1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	17097518	12A2p6	cell line	sgMsh2	17097518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	127	260	51	0.196153846	exonic	Tes	synonymous SNV	Tes:NM_207176:exon4:c.T624C:p.P208P	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8162078	CTG	synonymous	NA	NA	NA	NA
M6	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Vardict	2	0.037	122	32	1	0.03125	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	2.42E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	17492124	12A2p6	cell line	sgMsh2	17492124	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	131	103	6	0.058252427	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon3:c.T884C:p.L295P	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999992	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	172	498	109	0.218875502	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	GTT	synonymous	NA	NA	NA	NA
M6	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	159	455	109	0.23956044	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	17665325	12A2p6	cell line	sgMsh2	17665325	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	190	622	24	0.038585209	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon10:c.T751G:p.S251A	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	293	1	0	0	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.59E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	132	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9798346	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.928	176	96	89	0.927083333	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	5	1	1	0.9999987	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M6	chr6	22237622	12A2p6	cell line	sgMsh2	22237622	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	188	0	0	NA	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon21:c.A2736T:p.E912D	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.999564	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	22254572	12A2p6	cell line	sgMsh2	22254572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	193	1	0	0	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon22:c.A2963G:p.H988R	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	23587545	12A2p6	cell line	sgMsh2	23587545	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.169	71	2	0	0	exonic	Cadps2	synonymous SNV	"Cadps2:NM_001252105:exon5:c.C945T:p.S315S,Cadps2:NM_001252106:exon5:c.C945T:p.S315S,Cadps2:NM_001252107:exon5:c.C945T:p.S315S,Cadps2:NM_001252108:exon5:c.C945T:p.S315S,Cadps2:NM_001252110:exon5:c.C945T:p.S315S,Cadps2:NM_153163:exon5:c.C945T:p.S315S"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9873347	CGG	synonymous	NA	NA	NA	NA
M6	chr6	23599510	12A2p6	cell line	sgMsh2	23599510	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	86	0	0	NA	exonic	Cadps2	synonymous SNV	"Cadps2:NM_001252105:exon4:c.C796T:p.L266L,Cadps2:NM_001252106:exon4:c.C796T:p.L266L,Cadps2:NM_001252107:exon4:c.C796T:p.L266L,Cadps2:NM_001252108:exon4:c.C796T:p.L266L,Cadps2:NM_001252109:exon4:c.C796T:p.L266L,Cadps2:NM_001252110:exon4:c.C796T:p.L266L,Cadps2:NM_153163:exon4:c.C796T:p.L266L"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994869	AGC	synonymous	NA	NA	NA	NA
M6	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	190	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	23969343	12A2p6	cell line	sgMsh2	23969343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	216	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T718C:p.S240P	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	24168044	12A2p6	cell line	sgMsh2	24168044	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.178	86	0	0	NA	exonic	Slc13a1	synonymous SNV	Slc13a1:NM_019481:exon1:c.T21C:p.A7A	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9981149	AAG	synonymous	NA	NA	NA	NA
M6	chr6	24450823	12A2p6	cell line	sgMsh2	24450823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	42	0	0	NA	exonic	Iqub	synonymous SNV	Iqub:NM_172535:exon11:c.T1776C:p.D592D	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9906932	TAT	synonymous	NA	NA	NA	NA
M6	chr6	24598008	12A2p6	cell line	sgMsh2	24598008	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	62	0	0	NA	exonic	Lmod2	synonymous SNV	Lmod2:NM_053098:exon1:c.T126G:p.P42P	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	CTG	synonymous	NA	NA	NA	NA
M6	chr6	24756271	12A2p6	cell line	sgMsh2	24756271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	133	0	0	NA	exonic	Hyal4	nonsynonymous SNV	Hyal4:NM_029848:exon3:c.T487C:p.Y163H	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	CTA	nonsynonymous	ACAG	9	ACAGACAGA	NA
M6	chr6	24763855	12A2p6	cell line	sgMsh2	24763855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	266	0	0	NA	exonic	Hyal4	synonymous SNV	Hyal4:NM_029848:exon4:c.T1014C:p.V338V	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999978	TTT	synonymous	TTG	8	TTGTTGTT	NA
M6	chr6	24765781	12A2p6	cell line	sgMsh2	24765781	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	202	0	0	NA	exonic	Hyal4	nonsynonymous SNV	Hyal4:NM_029848:exon5:c.G1133A:p.R378H	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999833	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr6	24796789	12A2p6	cell line	sgMsh2	24796789	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	179	0	0	NA	exonic	Spam1	synonymous SNV	"Spam1:NM_009241:exon2:c.T738C:p.D246D,Spam1:NM_001079875:exon3:c.T738C:p.D246D"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999998	ATA	synonymous	NA	NA	NA	NA
M6	chr6	25753197	12A2p6	cell line	sgMsh2	25753197	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	113	39	6	0.153846154	exonic	Pot1a	nonsynonymous SNV	Pot1a:NM_133931:exon13:c.A1339C:p.N447H	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	TTT	nonsynonymous	T	5	TTTTT	NA
M6	chr6	27363247	12A2p6	cell line	sgMsh2	27363247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	197	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2268C:p.S756S,Grm8:NM_001361125:exon9:c.T2268C:p.S756S,Grm8:NM_008174:exon9:c.T2268C:p.S756S"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999609	TAC	synonymous	NA	NA	NA	NA
M6	chr6	27363252	12A2p6	cell line	sgMsh2	27363252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	198	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.T2263C:p.Y755H,Grm8:NM_001361125:exon9:c.T2263C:p.Y755H,Grm8:NM_008174:exon9:c.T2263C:p.Y755H"	6qA3.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999625	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	29155080	12A2p6	cell line	sgMsh2	29155080	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	113	104	8	0.076923077	exonic	Rbm28	synonymous SNV	Rbm28:NM_133925:exon7:c.T723C:p.D241D	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999923	CAT	synonymous	NA	NA	NA	NA
M6	chr6	29450863	12A2p6	cell line	sgMsh2	29450863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	7	0	0	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon26:c.T4509C:p.T1503T,Flnc:NM_001311074:exon26:c.T4509C:p.T1503T"	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CTG	synonymous	NA	NA	NA	NA
M6	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	46	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	29757358	12A2p6	cell line	sgMsh2	29757358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	113	95	8	0.084210526	exonic	Smo	nonsynonymous SNV	Smo:NM_176996:exon8:c.T1471C:p.Y491H	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9776008	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	30640606	12A2p6	cell line	sgMsh2	30640606	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	170	0	0	NA	exonic	Cpa1	synonymous SNV	Cpa1:NM_025350:exon3:c.T246C:p.H82H	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999998	ATG	synonymous	NA	NA	NA	NA
M6	chr6	30748971	12A2p6	cell line	sgMsh2	30748971	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	118	110	4	0.036363636	exonic	Copg2	synonymous SNV	Copg2:NM_017478:exon24:c.C2502T:p.G834G	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	4.13E-08	AGC	synonymous	NA	NA	NA	NA
M6	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Vardict	2	0.036	119	92	7	0.076086957	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	2.45E-08	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	30958662	12A2p6	cell line	sgMsh2	30958662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	19	0	0	NA	exonic	Klf14	synonymous SNV	Klf14:NM_001135093:exon1:c.T36C:p.A12A	6qA3.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9587574	CAG	synonymous	NA	NA	NA	NA
M6	chr6	34357477	12A2p6	cell line	sgMsh2	34357477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	150	432	81	0.1875	exonic	Akr1b8	nonsynonymous SNV	Akr1b8:NM_008012:exon3:c.T251C:p.F84S	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	128	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	35271698	12A2p6	cell line	sgMsh2	35271698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	75	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon14:c.C1513T:p.L505L	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.8205809	AGG	synonymous	NA	NA	NA	NA
M6	chr6	38036747	12A2p6	cell line	sgMsh2	38036747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	120	0	0	NA	exonic	Svopl	nonsynonymous SNV	Svopl:NM_177200:exon4:c.A239C:p.Q80P	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	2	0.9456889	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	165	12	0	0	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Vardict	2	0.075	57	162	5	0.030864198	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.7868864	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M6	chr6	38818458	12A2p6	cell line	sgMsh2	38818458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	207	120	23	0.191666667	exonic	Hipk2	nonsynonymous SNV	"Hipk2:NM_001136065:exon2:c.A854G:p.K285R,Hipk2:NM_001294143:exon2:c.A875G:p.K292R,Hipk2:NM_001294144:exon2:c.A875G:p.K292R,Hipk2:NM_010433:exon2:c.A875G:p.K292R"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	38982203	12A2p6	cell line	sgMsh2	38982203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	252	1	0	0	exonic	Tbxas1	nonsynonymous SNV	Tbxas1:NM_011539:exon4:c.T319C:p.F107L	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.86E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	39401410	12A2p6	cell line	sgMsh2	39401410	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	45	55	9	0.163636364	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon5:c.C594A:p.A198A,Mkrn1:NM_018810:exon5:c.C786A:p.A262A"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9923537	GGG	synonymous	NA	NA	NA	NA
M6	chr6	39405918	12A2p6	cell line	sgMsh2	39405918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	233	154	36	0.233766234	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon3:c.T165C:p.A55A,Mkrn1:NM_018810:exon3:c.T357C:p.A119A"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999943	TAG	synonymous	NA	NA	NA	NA
M6	chr6	39614154	12A2p6	cell line	sgMsh2	39614154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	99	19	3	0.157894737	exonic	Braf	synonymous SNV	Braf:NM_139294:exon21:c.A2370G:p.T790T	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	GTG	synonymous	NA	NA	NA	NA
M6	chr6	39639598	12A2p6	cell line	sgMsh2	39639598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	175	32	4	0.125	exonic	Braf	nonsynonymous SNV	Braf:NM_139294:exon16:c.G1797T:p.Q599H	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	245	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	40581839	12A2p6	cell line	sgMsh2	40581839	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	152	0	0	NA	exonic	Clec5a	synonymous SNV	"Clec5a:NM_021364:exon4:c.A237G:p.Q79Q,Clec5a:NM_001038604:exon5:c.A312G:p.Q104Q"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999834	CTT	synonymous	NA	NA	NA	NA
M6	chr6	40612821	12A2p6	cell line	sgMsh2	40612821	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	98	0	0	NA	exonic	Tas2r138	frameshift deletion	Tas2r138:NM_001001451:exon1:c.490delT:p.C164Afs*12	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr6	40655285	12A2p6	cell line	sgMsh2	40655285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	135	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon6:c.T552C:p.P184P,Mgam:NM_001368875:exon6:c.T552C:p.P184P"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999539	CTT	synonymous	NA	NA	NA	NA
M6	chr6	40895432	12A2p6	cell line	sgMsh2	40895432	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	152	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon6:c.C656A:p.A219D	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9976945	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr6	40925978	12A2p6	cell line	sgMsh2	40925978	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.248	151	0	0	NA	exonic	1700074P13Rik	frameshift insertion	"1700074P13Rik:NM_001361930:exon4:c.458dupA:p.N153Kfs*2,1700074P13Rik:NM_028550:exon5:c.458dupA:p.N153Kfs*2"	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6	chr6	41374996	12A2p6	cell line	sgMsh2	41374996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	370	0	0	NA	exonic	Prss3	nonsynonymous SNV	Prss3:NM_011645:exon3:c.T332G:p.L111R	6qB1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	164	11	0	0	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.36E-09	TTG	synonymous	NA	NA	NA	NA
M6	chr6	41621271	12A2p6	cell line	sgMsh2	41621271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	135	0	0	NA	exonic	Trpv6	synonymous SNV	Trpv6:NM_022413:exon15:c.T2101C:p.L701L	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	AAG	synonymous	NA	NA	NA	NA
M6	chr6	41657965	12A2p6	cell line	sgMsh2	41657965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	191	0	0	NA	exonic	Trpv5	nonsynonymous SNV	Trpv5:NM_001007572:exon13:c.A1576G:p.T526A	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9662437	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	41685379	12A2p6	cell line	sgMsh2	41685379	T	-	Deletion	Strelka2;Vardict	2	0.1825	126	0	0	NA	exonic	Llcfc1	frameshift deletion	"Llcfc1:NM_001381953:exon2:c.199delT:p.F68_L69insYER,Llcfc1:NM_001381954:exon2:c.178delT:p.F61_L62insYER,Llcfc1:NM_029671:exon2:c.316delT:p.F107_L108insYER,Llcfc1:NM_001381952:exon3:c.331delT:p.F112_L113insYER"	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.979068942	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M6	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Vardict	2	0.087	58	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Vardict	2	0.034	134	118	3	0.025423729	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	2.14E-09	ACG	synonymous	NA	NA	NA	NA
M6	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	103	66	2	0.03030303	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9999711	ATG	synonymous	NA	NA	NA	NA
M6	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	94	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9856673	ATG	nonsynonymous	G	5	GGGGG	NA
M6	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	42955913	12A2p6	cell line	sgMsh2	42955913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	445	0	0	NA	exonic	Olfr444	synonymous SNV	Olfr444:NM_146656:exon1:c.A414G:p.K138K	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	375	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	43167977	12A2p6	cell line	sgMsh2	43167977	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	73	0	0	NA	exonic	Olfr437	nonsynonymous SNV	Olfr437:NM_146296:exon1:c.G918T:p.K306N	6qB2.1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.718878017	2	0.5450361	AGA	nonsynonymous	AGA	9	AGAAGAAGA	NA
M6	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	134	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	0.9764013	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	47821490	12A2p6	cell line	sgMsh2	47821490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	185	3	0	0	exonic	Zfp786	synonymous SNV	Zfp786:NM_177882:exon4:c.A513C:p.V171V	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	GTA	synonymous	NA	NA	NA	NA
M6	chr6	47890077	12A2p6	cell line	sgMsh2	47890077	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	88	39	12	0.307692308	exonic	Zfp282	synonymous SNV	Zfp282:NM_146175:exon3:c.C597T:p.T199T	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CCT	synonymous	NA	NA	NA	NA
M6	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	102	11	0	0	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.8094653	CCC	synonymous	NA	NA	NA	NA
M6	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	61	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.8532702	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr6	48490404	12A2p6	cell line	sgMsh2	48490404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	87	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon83:c.T12526C:p.S4176P	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	48495247	12A2p6	cell line	sgMsh2	48495247	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	95	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon94:c.C14374T:p.R4792C	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	TCG	nonsynonymous	NA	NA	NA	NA
M6	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	118	7	0	0	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	0.9999994	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	48677655	12A2p6	cell line	sgMsh2	48677655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	239	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.C175A:p.L59I	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.19E-08	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	48678048	12A2p6	cell line	sgMsh2	48678048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	136	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.A568G:p.M190V	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	48708056	12A2p6	cell line	sgMsh2	48708056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	152	0	0	NA	exonic	Gimap6	nonsynonymous SNV	Gimap6:NM_153175:exon1:c.A95G:p.Y32C	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9780069	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	48723489	12A2p6	cell line	sgMsh2	48723489	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	53	0	0	NA	exonic	Gimap7	nonsynonymous SNV	Gimap7:NM_146167:exon2:c.A8C:p.E3A	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.44527519	2	0.006043231	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	48742609	12A2p6	cell line	sgMsh2	48742609	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	64	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.T154A:p.F52I,Gimap1:NM_175860:exon3:c.T154A:p.F52I"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9978087	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	48743156	12A2p6	cell line	sgMsh2	48743156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	90	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.A701G:p.D234G,Gimap1:NM_175860:exon3:c.A701G:p.D234G"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.999316	GAC	nonsynonymous	C	5	CCCCC	NA
M6	chr6	48907730	12A2p6	cell line	sgMsh2	48907730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	84	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon2:c.A1706G:p.Q569R,Aoc1:NM_001161622:exon3:c.A1706G:p.Q569R,Aoc1:NM_029638:exon3:c.A1706G:p.Q569R"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9993778	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	48975491	12A2p6	cell line	sgMsh2	48975491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	132	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.A349G:p.T117A	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9960122	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	49438524	12A2p6	cell line	sgMsh2	49438525	AA	TT	DBS	Mutect2;Vardict	2	0.041	170	0	0	NA	exonic	Stk31	nonframeshift substitution	"Stk31:NM_001381960:exon14:c.1723_1724TT:p.K575L,Stk31:NM_029916:exon14:c.1792_1793TT:p.K598L"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	50320078	12A2p6	cell line	sgMsh2	50320078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	88	113	23	0.203539823	exonic	Osbpl3	nonsynonymous SNV	"Osbpl3:NM_001163645:exon15:c.T1639A:p.C547S,Osbpl3:NM_027881:exon15:c.T1747A:p.C583S,Osbpl3:NM_001347213:exon17:c.T1840A:p.C614S"	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	50574046	12A2p6	cell line	sgMsh2	50574046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	286	13	2	0.153846154	exonic	4921507P07Rik	synonymous SNV	4921507P07Rik:NM_027564:exon10:c.T1422C:p.Y474Y	6qB2.3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.94E-09	CAT	synonymous	NA	NA	NA	NA
M6	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	25	9	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6	chr6	51458223	12A2p6	cell line	sgMsh2	51458223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	192	33	3	0.090909091	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.A1762G:p.T588A	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9992308	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	52012366	12A2p6	cell line	sgMsh2	52012366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	71	58	13	0.224137931	exonic	Skap2	synonymous SNV	Skap2:NM_018773:exon1:c.T36C:p.P12P	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9981229	GAG	synonymous	NA	NA	NA	NA
M6	chr6	53818171	12A2p6	cell line	sgMsh2	53818171	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	35	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.G2065T:p.G689C	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9853015	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	55872621	12A2p6	cell line	sgMsh2	55872621	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	152	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.A137C:p.N46T	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9797263	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	148	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999782	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr6	55898057	12A2p6	cell line	sgMsh2	55898057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	208	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.T991G:p.C331G	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	56741496	12A2p6	cell line	sgMsh2	56741496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	224	50	4	0.08	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon11:c.T1346C:p.I449T	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9999811	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	377	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	57159416	12A2p6	cell line	sgMsh2	57159416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	352	0	0	NA	exonic	Vmn1r12	nonsynonymous SNV	Vmn1r12:NM_001101579:exon1:c.T497C:p.V166A	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	57233566	12A2p6	cell line	sgMsh2	57233566	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	323	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A128C:p.K43T	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.08E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	57233999	12A2p6	cell line	sgMsh2	57233999	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.163	343	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A561G:p.I187M	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9999582	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	283	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	57360638	12A2p6	cell line	sgMsh2	57360638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	312	0	0	NA	exonic	Vmn1r17	nonsynonymous SNV	Vmn1r17:NM_134171:exon1:c.A741G:p.I247M	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.17E-09	ATA	nonsynonymous	ATGAT	10	ATGATATGAT	NA
M6	chr6	57522771	12A2p6	cell line	sgMsh2	57522771	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	135	31	0	0	exonic	Ppm1k	synonymous SNV	Ppm1k:NM_175523:exon3:c.T519C:p.S173S	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	3.81E-08	AAC	synonymous	NA	NA	NA	NA
M6	chr6	57611833	12A2p6	cell line	sgMsh2	57611833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	105	7	1	0.142857143	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon10:c.A1273G:p.R425G	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	57723627	12A2p6	cell line	sgMsh2	57723627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	168	18	2	0.111111111	exonic	Lancl2	synonymous SNV	Lancl2:NM_133737:exon4:c.T669C:p.A223A	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	CTA	synonymous	NA	NA	NA	NA
M6	chr6	57978758	12A2p6	cell line	sgMsh2	57978758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	418	0	0	NA	exonic	Vmn1r25	nonsynonymous SNV	Vmn1r25:NM_053238:exon1:c.T545C:p.F182S	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	58939350	12A2p6	cell line	sgMsh2	58939350	-	T	Insertion	Strelka2;Vardict	2	0.1429	98	0	0	NA	exonic	Fam13a	frameshift insertion	Fam13a:NM_153574:exon17:c.1900dupA:p.M634Nfs*7	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.766624393	NA	NA	CAT	frameshift	T	9	TTTTTTTTT	1
M6	chr6	58955281	12A2p6	cell line	sgMsh2	58955281	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	201	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon11:c.A1106T:p.K369M	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	59354815	12A2p6	cell line	sgMsh2	59354815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	140	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.G506T:p.G169V	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999271	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	132	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	2.30E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	60972984	12A2p6	cell line	sgMsh2	60972984	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	136	0	0	NA	exonic	Mmrn1	frameshift deletion	"Mmrn1:NM_001163507:exon5:c.917delA:p.K307Nfs*5,Mmrn1:NM_027613:exon5:c.917delA:p.K307Nfs*5"	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr6	60976637	12A2p6	cell line	sgMsh2	60976637	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	213	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.A1901C:p.Q634P,Mmrn1:NM_027613:exon6:c.A1901C:p.Q634P"	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	61638471	12A2p6	cell line	sgMsh2	61638471	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	132	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon7:c.A1956T:p.S652S,Ccser1:NM_183310:exon7:c.A1956T:p.S652S"	6qB3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999657	CAC	synonymous	NA	NA	NA	NA
M6	chr6	64665882	12A2p6	cell line	sgMsh2	64665882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	129	0	0	NA	exonic	Grid2	nonsynonymous SNV	Grid2:NM_008167:exon16:c.A2627G:p.H876R	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	65859463	12A2p6	cell line	sgMsh2	65859463	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	50	13	1	0.076923077	exonic	Prdm5	nonsynonymous SNV	Prdm5:NM_027547:exon6:c.G757A:p.E253K	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	0.7080452	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr6	65953308	12A2p6	cell line	sgMsh2	65953308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	233	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A526G:p.R176G	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.21E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;Vardict	2	0.019	331	170	0	0	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.101930465	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	373	209	10	0.04784689	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	CTG	synonymous	NA	NA	NA	NA
M6	chr6	66539850	12A2p6	cell line	sgMsh2	66539851	TA	AG	DBS	Mutect2;Vardict	2	0.122	289	163	0	0	exonic	Mad2l1	nonframeshift substitution	"Mad2l1:NM_001355624:exon5:c.525_526AG:p.T176A,Mad2l1:NM_019499:exon5:c.525_526AG:p.T176A"	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	194	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	71496844	12A2p6	cell line	sgMsh2	71496844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	174	118	20	0.169491525	exonic	Rnf103	nonsynonymous SNV	Rnf103:NM_009543:exon2:c.A240C:p.E80D	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8775504	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	182	39	0.214285714	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr6	77244542	12A2p6	cell line	sgMsh2	77244542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.C981A:p.S327S,Lrrtm1:NM_028880:exon2:c.C981A:p.S327S"	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	CCT	synonymous	NA	NA	NA	NA
M6	chr6	78376435	12A2p6	cell line	sgMsh2	78376435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	151	0	0	NA	exonic	Reg3d	nonsynonymous SNV	"Reg3d:NM_001161741:exon4:c.C286T:p.H96Y,Reg3d:NM_013893:exon5:c.C424T:p.H142Y"	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Vardict	2	0.033	160	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.01E-09	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr6	81964328	12A2p6	cell line	sgMsh2	81964328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	155	113	25	0.221238938	exonic	Mrpl19	nonsynonymous SNV	Mrpl19:NM_026490:exon2:c.G251A:p.R84K	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8431227	CCT	nonsynonymous	C	5	CCCCC	NA
M6	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	81	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	84099572	12A2p6	cell line	sgMsh2	84099572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	103	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon19:c.T1876C:p.Y626H,Dysf:NM_001077694:exon20:c.T1966C:p.Y656H,Dysf:NM_021469:exon20:c.T1969C:p.Y657H"	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999833	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	85628589	12A2p6	cell line	sgMsh2	85628589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	243	15	1	0.066666667	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon10:c.T5813C:p.V1938A	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.71E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	86118765	12A2p6	cell line	sgMsh2	86118765	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	119	26	3	0.115384615	exonic	Add2	nonsynonymous SNV	"Add2:NM_001271857:exon16:c.A2162C:p.E721A,Add2:NM_001271858:exon16:c.A2162C:p.E721A,Add2:NM_001271859:exon16:c.A2162C:p.E721A,Add2:NM_013458:exon16:c.A2162C:p.E721A"	6qC3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9997161	GAG	nonsynonymous	AAG	15	AAGAAGAAGGAGAAG	NA
M6	chr6	86524911	12A2p6	cell line	sgMsh2	86524911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	95	744	120	0.161290323	exonic	Pcbp1	synonymous SNV	Pcbp1:NM_011865:exon1:c.T1005C:p.S335S	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9988071	TAC	synonymous	NA	NA	NA	NA
M6	chr6	87588585	12A2p6	cell line	sgMsh2	87588585	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	164	1	0	0	exonic	Prokr1	nonsynonymous SNV	"Prokr1:NM_001355655:exon2:c.C277A:p.L93I,Prokr1:NM_021381:exon2:c.C277A:p.L93I"	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	2	0.998998	AGC	nonsynonymous	T	5	TTTTT	NA
M6	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	97	51	6	0.117647059	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	22	1	0	0	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9659636	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	89870010	12A2p6	cell line	sgMsh2	89870010	G	-	Deletion	Mutect2;Vardict	2	0.028	353	0	0	NA	exonic	Vmn1r43	frameshift deletion	Vmn1r43:NM_053220:exon1:c.493delC:p.Q165Nfs*11	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	NA	NA	TGA	frameshift	NA	NA	NA	-1
M6	chr6	90179503	12A2p6	cell line	sgMsh2	90179503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	378	0	0	NA	exonic	Vmn1r52	nonsynonymous SNV	Vmn1r52:NM_053222:exon1:c.T788C:p.I263T	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	90203026	12A2p6	cell line	sgMsh2	90203026	A	G	SNV	Mutect2;Vardict	2	0.031	335	0	0	NA	exonic	V1ra8	synonymous SNV	V1ra8:NM_053223:exon1:c.A210G:p.T70T	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	CAG	synonymous	NA	NA	NA	NA
M6	chr6	90417670	12A2p6	cell line	sgMsh2	90417670	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	113	1	0	0	exonic	Cfap100	synonymous SNV	Cfap100:NM_173775:exon4:c.C174T:p.H58H	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9996585	TGT	synonymous	NA	NA	NA	NA
M6	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	253	29	3	0.103448276	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr6	91172243	12A2p6	cell line	sgMsh2	91172243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	78	34	3	0.088235294	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon9:c.G728T:p.R243M	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991299	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	91365853	12A2p6	cell line	sgMsh2	91365853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	97	15	5	0.333333333	exonic	Wnt7a	nonsynonymous SNV	Wnt7a:NM_009527:exon4:c.A1046C:p.K349T	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9989225	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	91408767	12A2p6	cell line	sgMsh2	91408767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	151	17	2	0.117647059	exonic	Wnt7a	nonsynonymous SNV	"Wnt7a:NM_001363757:exon2:c.T203C:p.M68T,Wnt7a:NM_009527:exon2:c.T203C:p.M68T"	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999475	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	128	71	0	0	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.498922803	2	0.9965681	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr6	92458604	12A2p6	cell line	sgMsh2	92458604	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	1	0	0	exonic	Prickle2	nonsynonymous SNV	"Prickle2:NM_001134459:exon2:c.G15A:p.M5I,Prickle2:NM_001134460:exon2:c.G15A:p.M5I,Prickle2:NM_001134461:exon2:c.G15A:p.M5I,Prickle2:NM_001081146:exon3:c.G183A:p.M61I"	6qD1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	152	459	25	0.054466231	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9997865	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	98003970	12A2p6	cell line	sgMsh2	98003970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	135	0	0	NA	exonic	Mitf	synonymous SNV	"Mitf:NM_008601:exon5:c.A525G:p.P175P,Mitf:NM_001113198:exon6:c.A846G:p.P282P,Mitf:NM_001178049:exon6:c.A798G:p.P266P"	6qD3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8123777	CAG	synonymous	NA	NA	NA	NA
M6	chr6	98013757	12A2p6	cell line	sgMsh2	98013757	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	117	2	0	0	exonic	Mitf	nonsynonymous SNV	"Mitf:NM_008601:exon8:c.C799A:p.L267I,Mitf:NM_001113198:exon9:c.C1120A:p.L374I,Mitf:NM_001178049:exon9:c.C1072A:p.L358I"	6qD3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	372	42	8	0.19047619	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	103711236	12A2p6	cell line	sgMsh2	103711236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	64	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon23:c.A3036G:p.L1012L	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9935444	TAG	synonymous	NA	NA	NA	NA
M6	chr6	104845775	12A2p6	cell line	sgMsh2	104845775	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	141	0	0	NA	exonic	Cntn6	synonymous SNV	Cntn6:NM_017383:exon18:c.C2286T:p.I762I	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9975162	TCT	synonymous	NA	NA	NA	NA
M6	chr6	106353644	12A2p6	cell line	sgMsh2	106353644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	162	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon5:c.T222C:p.D74D,Cntn4:NM_001109751:exon6:c.T222C:p.D74D,Cntn4:NM_001364566:exon6:c.T222C:p.D74D,Cntn4:NM_001109749:exon7:c.T222C:p.D74D,Cntn4:NM_173004:exon7:c.T222C:p.D74D"	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9982475	ATT	synonymous	NA	NA	NA	NA
M6	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	140	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	5.92E-09	CTT	synonymous	NA	NA	NA	NA
M6	chr6	108152244	12A2p6	cell line	sgMsh2	108152244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	83	67	11	0.164179104	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.T817C:p.F273L	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	108152315	12A2p6	cell line	sgMsh2	108152315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	57	81	24	0.296296296	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.A746G:p.Q249R	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	105	17	6	0.352941176	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998537	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M6	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	110	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	200	531	20	0.037664783	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9979639	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr6	113672757	12A2p6	cell line	sgMsh2	113672757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	119	25	9	0.36	exonic	Irak2	nonsynonymous SNV	"Irak2:NM_001113553:exon4:c.T391C:p.S131P,Irak2:NM_172161:exon5:c.T535C:p.S179P"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr6	113686774	12A2p6	cell line	sgMsh2	113686774	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	117	29	0	0	exonic	Irak2	nonsynonymous SNV	"Irak2:NM_001113553:exon10:c.G1139A:p.S380N,Irak2:NM_172161:exon11:c.G1283A:p.S428N"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.999736	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	213	53	2	0.037735849	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	1.87E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	114302069	12A2p6	cell line	sgMsh2	114302069	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	119	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon3:c.C120T:p.D40D	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	ACC	synonymous	NA	NA	NA	NA
M6	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	130	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.94E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	115965922	12A2p6	cell line	sgMsh2	115965922	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	260	41	4	0.097560976	exonic	Plxnd1	frameshift deletion	Plxnd1:NM_026376:exon20:c.3800delG:p.G1267Afs*66	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr6	115967825	12A2p6	cell line	sgMsh2	115967825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	129	56	11	0.196428571	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon15:c.A3007G:p.I1003V	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.9987137	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr6	116043378	12A2p6	cell line	sgMsh2	116043378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	218	44	9	0.204545455	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon2:c.A32G:p.K11R,Tmcc1:NM_177412:exon4:c.A992G:p.K331R"	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9996051	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	116259224	12A2p6	cell line	sgMsh2	116259224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	231	121	18	0.148760331	exonic	Washc2	nonsynonymous SNV	Washc2:NM_026585:exon29:c.G3655A:p.D1219N	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.65E-08	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr6	116414553	12A2p6	cell line	sgMsh2	116414553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	121	0	0	NA	exonic	Alox5	nonsynonymous SNV	Alox5:NM_009662:exon9:c.G1242T:p.Q414H	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	116427220	12A2p6	cell line	sgMsh2	116427220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	163	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon4:c.A477G:p.K159K	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999968	ATT	synonymous	NA	NA	NA	NA
M6	chr6	116582189	12A2p6	cell line	sgMsh2	116582189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	256	0	0	NA	exonic	Olfr215	synonymous SNV	Olfr215:NM_146446:exon1:c.C756T:p.S252S	6qE3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	7.81E-09	AGC	synonymous	NA	NA	NA	NA
M6	chr6	117176090	12A2p6	cell line	sgMsh2	117176090	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.161	40	0	0	NA	exonic	Cxcl12	nonsynonymous SNV	Cxcl12:NM_001012477:exon4:c.C271T:p.R91C	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9372469	GCG	nonsynonymous	G	5	GGGGG	NA
M6	chr6	118126130	12A2p6	cell line	sgMsh2	118126130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	107	191	35	0.183246073	exonic	Csgalnact2	synonymous SNV	"Csgalnact2:NM_001362149:exon3:c.G870A:p.Q290Q,Csgalnact2:NM_030165:exon3:c.G870A:p.Q290Q"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998718	TCT	synonymous	NA	NA	NA	NA
M6	chr6	118404595	12A2p6	cell line	sgMsh2	118404595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	120	99	15	0.151515152	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.T1981G:p.S661A	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7852772	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	118411538	12A2p6	cell line	sgMsh2	118411538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	76	72	8	0.111111111	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon8:c.T1039C:p.Y347H	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9929008	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	203	34	2	0.058823529	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	118518367	12A2p6	cell line	sgMsh2	118518367	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	172	31	1	0.032258065	exonic	Ankrd26	synonymous SNV	Ankrd26:NM_001081112:exon26:c.T3768C:p.A1256A	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.075	72	19	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	NA	NA	CGT	frameshift	NA	NA	NA	-1
M6	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	122	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999524	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M6	chr6	119242886	12A2p6	cell line	sgMsh2	119242886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	207	0	0	NA	exonic	Cacna2d4	nonsynonymous SNV	"Cacna2d4:NM_001033382:exon5:c.A532G:p.R178G,Cacna2d4:NM_001347427:exon5:c.A532G:p.R178G"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	119773806	12A2p6	cell line	sgMsh2	119773806	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	197	53	2	0.037735849	exonic	Erc1	synonymous SNV	"Erc1:NM_178085:exon6:c.T960C:p.S320S,Erc1:NM_053204:exon8:c.T1497C:p.S499S"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	4.94E-09	TAC	synonymous	NA	NA	NA	NA
M6	chr6	120208928	12A2p6	cell line	sgMsh2	120208928	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	106	18	3	0.166666667	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon17:c.A2549C:p.Q850P	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9974076	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	120334800	12A2p6	cell line	sgMsh2	120334800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	136	32	10	0.3125	exonic	Ccdc77	nonsynonymous SNV	"Ccdc77:NM_001381937:exon6:c.A634G:p.N212D,Ccdc77:NM_001381934:exon8:c.A790G:p.N264D,Ccdc77:NM_001381935:exon8:c.A736G:p.N246D,Ccdc77:NM_001381936:exon8:c.A736G:p.N246D,Ccdc77:NM_001381938:exon8:c.A133G:p.N45D,Ccdc77:NM_026028:exon8:c.A790G:p.N264D"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	120756781	12A2p6	cell line	sgMsh2	120756781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	106	0	0	NA	exonic	Cecr2	synonymous SNV	"Cecr2:NM_001128151:exon14:c.A1728G:p.S576S,Cecr2:NM_001368706:exon14:c.A1728G:p.S576S"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	CAT	synonymous	NA	NA	NA	NA
M6	chr6	121190155	12A2p6	cell line	sgMsh2	121190155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	90	26	5	0.192307692	exonic	Pex26	nonsynonymous SNV	"Pex26:NM_001304773:exon4:c.G722A:p.G241D,Pex26:NM_028730:exon4:c.G722A:p.G241D"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr6	121387756	12A2p6	cell line	sgMsh2	121387756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	81	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	"Iqsec3:NM_001289685:exon7:c.A1673G:p.K558R,Iqsec3:NM_001033354:exon8:c.A2573G:p.K858R"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	121840105	12A2p6	cell line	sgMsh2	121840105	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	282	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon2:c.T132C:p.P44P	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	3.49E-09	CTG	synonymous	NA	NA	NA	NA
M6	chr6	122049751	12A2p6	cell line	sgMsh2	122049751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	280	0	0	NA	exonic	Mug2	nonsynonymous SNV	Mug2:NM_008646:exon14:c.T1643C:p.V548A	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.39E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	122279655	12A2p6	cell line	sgMsh2	122279655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	169	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon2:c.A171G:p.Q57Q	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GTT	synonymous	NA	NA	NA	NA
M6	chr6	122322387	12A2p6	cell line	sgMsh2	122322387	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	154	42	11	0.261904762	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon8:c.C1841A:p.P614H,Phc1:NM_001271579:exon9:c.C1997A:p.P666H,Phc1:NM_007905:exon9:c.C1997A:p.P666H,Phc1:NM_001355215:exon10:c.C2045A:p.P682H"	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999915	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	189	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.66E-09	AAT	synonymous	NA	NA	NA	NA
M6	chr6	122850369	12A2p6	cell line	sgMsh2	122850369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	217	0	0	NA	exonic	C3ar1	frameshift deletion	C3ar1:NM_009779:exon2:c.888delT:p.T297Lfs*29	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	NA	NA	TAG	frameshift	NA	NA	NA	-1
M6	chr6	122850373	12A2p6	cell line	sgMsh2	122850373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.156	224	0	0	NA	exonic	C3ar1	nonsynonymous SNV	C3ar1:NM_009779:exon2:c.T884C:p.F295S	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9880427	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	123235521	12A2p6	cell line	sgMsh2	123235521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	78	0	0	NA	exonic	Clec4n	nonsynonymous SNV	"Clec4n:NM_001190320:exon3:c.T205G:p.F69V,Clec4n:NM_001190321:exon3:c.T193G:p.F65V,Clec4n:NM_020001:exon4:c.T295G:p.F99V"	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9985969	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	123335825	12A2p6	cell line	sgMsh2	123335825	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	294	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.G1853T:p.R618L	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	123712979	12A2p6	cell line	sgMsh2	123712979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	415	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.A813G:p.T271T	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAC	synonymous	NA	NA	NA	NA
M6	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	387	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1	CTG	synonymous	NA	NA	NA	NA
M6	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Vardict	2	0.045	386	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.045	535	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr6	123816064	12A2p6	cell line	sgMsh2	123816064	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.226	306	0	0	NA	exonic	Vmn2r24	synonymous SNV	Vmn2r24:NM_001104639:exon6:c.G2349A:p.E783E	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.25E-09	AGG	synonymous	A	5	AAAAA	NA
M6	chr6	123822895	12A2p6	cell line	sgMsh2	123822895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	353	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon6:c.A2487G:p.L829L	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	GTA	synonymous	NA	NA	NA	NA
M6	chr6	124039164	12A2p6	cell line	sgMsh2	124039164	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	389	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon3:c.A586C:p.M196L	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	124061555	12A2p6	cell line	sgMsh2	124061555	A	-	Deletion	Mutect2;Vardict	2	0.037	520	0	0	NA	exonic	Vmn2r26	frameshift deletion	Vmn2r26:NM_019917:exon6:c.2088delA:p.M698Wfs*3	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr6	124325514	12A2p6	cell line	sgMsh2	124325514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	80	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon12:c.A3036G:p.K1012K,Cd163:NM_053094:exon12:c.A3036G:p.K1012K"	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	AAC	synonymous	NA	NA	NA	NA
M6	chr6	124702305	12A2p6	cell line	sgMsh2	124702305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	210	141	19	0.134751773	exonic	Lpcat3	nonsynonymous SNV	Lpcat3:NM_145130:exon8:c.A856G:p.T286A	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	2	0.5710842	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	124728798	12A2p6	cell line	sgMsh2	124728798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	77	11	0	0	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A505G:p.I169V,Ptpn6:NM_013545:exon4:c.A499G:p.I167V"	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990705	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	124809730	12A2p6	cell line	sgMsh2	124809730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	70	40	13	0.325	exonic	Spsb2	nonsynonymous SNV	"Spsb2:NM_001306050:exon2:c.A425G:p.H142R,Spsb2:NM_001306051:exon2:c.A425G:p.H142R,Spsb2:NM_001306052:exon2:c.A425G:p.H142R,Spsb2:NM_001306053:exon2:c.A425G:p.H142R,Spsb2:NM_013539:exon2:c.A425G:p.H142R"	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9985248	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	124831481	12A2p6	cell line	sgMsh2	124831481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	118	49	6	0.12244898	exonic	Cdca3	synonymous SNV	Cdca3:NM_013538:exon3:c.T240C:p.S80S	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	GTG	synonymous	NA	NA	NA	NA
M6	chr6	124837668	12A2p6	cell line	sgMsh2	124837668	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	198	0	0	NA	exonic	Gnb3	nonsynonymous SNV	Gnb3:NM_013530:exon5:c.A266T:p.K89M	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	125165300	12A2p6	cell line	sgMsh2	125165300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	201	27	0	0	exonic	Gapdh	synonymous SNV	Gapdh:NM_001289726:exon2:c.A72T:p.V24V	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTA	synonymous	NA	NA	NA	NA
M6	chr6	125170161	12A2p6	cell line	sgMsh2	125170161	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	174	64	5	0.078125	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon28:c.A3596G:p.K1199R	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	187	69	4	0.057971014	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	125177429	12A2p6	cell line	sgMsh2	125177429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	86	62	8	0.129032258	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon15:c.A1823G:p.E608G	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	125184281	12A2p6	cell line	sgMsh2	125184281	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	112	82	2	0.024390244	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon8:c.A787C:p.S263R	6qF2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.999996	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	125603430	12A2p6	cell line	sgMsh2	125603430	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.191	54	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon14:c.T1640C:p.V547A	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	125656649	12A2p6	cell line	sgMsh2	125656649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	177	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon36:c.T6097C:p.Y2033H	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	125667493	12A2p6	cell line	sgMsh2	125667493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	131	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon43:c.T7310C:p.V2437A	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999737	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	242	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	126101934	12A2p6	cell line	sgMsh2	126101934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	147	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A608G:p.Y203C,Ntf3:NM_008742:exon2:c.A569G:p.Y190C,Ntf3:NM_001164034:exon3:c.A608G:p.Y203C"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	ATA	nonsynonymous	A	5	AAAAA	NA
M6	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	119	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999789	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	126738672	12A2p6	cell line	sgMsh2	126738672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	164	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T1253C:p.V418A	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.999844	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	126866824	12A2p6	cell line	sgMsh2	126866824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	103	0	0	NA	exonic	Akap3	nonsynonymous SNV	Akap3:NM_009650:exon5:c.A2405G:p.Y802C	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	126928223	12A2p6	cell line	sgMsh2	126928223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	209	34	7	0.205882353	exonic	Rad51ap1	synonymous SNV	"Rad51ap1:NM_001347455:exon5:c.T324C:p.T108T,Rad51ap1:NM_009013:exon5:c.T324C:p.T108T"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999992	CAG	synonymous	NA	NA	NA	NA
M6	chr6	127146068	12A2p6	cell line	sgMsh2	127146068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	103	1083	170	0.156971376	exonic	Ccnd2	nonsynonymous SNV	Ccnd2:NM_009829:exon3:c.C523A:p.L175M	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9994521	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	128243381	12A2p6	cell line	sgMsh2	128243381	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	84	32	0	0	exonic	Tead4	nonsynonymous SNV	"Tead4:NM_001080979:exon7:c.G562A:p.D188N,Tead4:NM_011567:exon8:c.G691A:p.D231N"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	0.8876953	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	128487428	12A2p6	cell line	sgMsh2	128487428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	187	5	2	0.4	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon31:c.A4135G:p.T1379A	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr6	128499002	12A2p6	cell line	sgMsh2	128499002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	98	3	0	0	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon17:c.A2058T:p.P686P	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	GTG	synonymous	NA	NA	NA	NA
M6	chr6	128581002	12A2p6	cell line	sgMsh2	128581002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	185	0	0	NA	exonic	A2ml1	nonsynonymous SNV	A2ml1:NM_001001179:exon2:c.A190G:p.T64A	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	GTA	nonsynonymous	TAG	8	TAGTAGTA	NA
M6	chr6	129053198	12A2p6	cell line	sgMsh2	129053198	A	-	Deletion	Mutect2;Vardict	2	0.031	247	0	0	NA	exonic	Klrb1f	frameshift deletion	Klrb1f:NM_153094:exon3:c.200delA:p.K68Nfs*3	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr6	130327147	12A2p6	cell line	sgMsh2	130327147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	366	0	0	NA	exonic	Klra3	nonsynonymous SNV	"Klra3:NM_001289604:exon6:c.T581C:p.V194A,Klra3:NM_001289605:exon6:c.T581C:p.V194A,Klra3:NM_010648:exon6:c.T581C:p.V194A"	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	131684865	12A2p6	cell line	sgMsh2	131684865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	119	0	0	NA	exonic	Tas2r104	synonymous SNV	Tas2r104:NM_207011:exon1:c.C880T:p.L294L	6qF3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999216	AGT	synonymous	NA	NA	NA	NA
M6	chr6	132711246	12A2p6	cell line	sgMsh2	132711246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	190	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.A683G:p.H228R	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	188	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.9999994	GTG	synonymous	NA	NA	NA	NA
M6	chr6	132856271	12A2p6	cell line	sgMsh2	132856271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	148	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.C834T:p.S278S	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	CCT	synonymous	NA	NA	NA	NA
M6	chr6	132951200	12A2p6	cell line	sgMsh2	132951200	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	168	0	0	NA	exonic	Tas2r129	nonsynonymous SNV	Tas2r129:NM_207029:exon1:c.A99G:p.I33M	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999944	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	132952057	12A2p6	cell line	sgMsh2	132952057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	67	0	0	NA	exonic	Tas2r129	nonsynonymous SNV	Tas2r129:NM_207029:exon1:c.T956C:p.I319T	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998202	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr6	132980733	12A2p6	cell line	sgMsh2	132980733	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	206	0	0	NA	exonic	Tas2r109	nonsynonymous SNV	Tas2r109:NM_207017:exon1:c.T233C:p.L78P	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	2.78E-08	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	133036200	12A2p6	cell line	sgMsh2	133036200	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	90	0	0	NA	exonic	Tas2r103	nonsynonymous SNV	Tas2r103:NM_053211:exon1:c.G902T:p.R301M	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	134248493	12A2p6	cell line	sgMsh2	134248493	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	49	35	6	0.171428571	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A686G:p.N229S,Etv6:NM_001303102:exon6:c.A557G:p.N186S"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	152	113	20	0.17699115	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	134507677	12A2p6	cell line	sgMsh2	134507677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	128	23	0.1796875	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon6:c.A982G:p.T328A	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999583	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Vardict	2	0.041	108	18	2	0.111111111	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	0.9999993	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr6	135106215	12A2p6	cell line	sgMsh2	135106215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	140	0	0	NA	exonic	Gprc5d	synonymous SNV	Gprc5d:NM_001205396:exon4:c.A1014C:p.P338P	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9856	GTG	synonymous	NA	NA	NA	NA
M6	chr6	135106258	12A2p6	cell line	sgMsh2	135106258	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	121	0	0	NA	exonic	Gprc5d	stoploss	Gprc5d:NM_053118:exon3:c.A903C:p.X301C	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr6	135116037	12A2p6	cell line	sgMsh2	135116037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	88	0	0	NA	exonic	Gprc5d	nonsynonymous SNV	"Gprc5d:NM_001205396:exon2:c.A871G:p.M291V,Gprc5d:NM_053118:exon2:c.A871G:p.M291V"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	ATC	nonsynonymous	ATCC	8	ATCCATCC	NA
M6	chr6	136044278	12A2p6	cell line	sgMsh2	136044278	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	73	0	0	NA	exonic	Grin2b	stopgain	"Grin2b:NM_001363750:exon4:c.T24A:p.C8X,Grin2b:NM_008171:exon4:c.T24A:p.C8X"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	136704287	12A2p6	cell line	sgMsh2	136704287	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.163	98	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_145067:exon23:c.G2726A:p.G909E,Gucy2c:NM_001127318:exon24:c.G2798A:p.G933E"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9856959	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr6	136854946	12A2p6	cell line	sgMsh2	136854946	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	157	0	0	NA	exonic	Art4	nonsynonymous SNV	Art4:NM_026639:exon2:c.G196A:p.V66I	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999023	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr6	136908049	12A2p6	cell line	sgMsh2	136908049	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.171	73	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon6:c.G750T:p.E250D	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9908856	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr6	137382718	12A2p6	cell line	sgMsh2	137382718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	49	0	0	NA	exonic	Ptpro	nonsynonymous SNV	"Ptpro:NM_001164401:exon6:c.A1285G:p.S429G,Ptpro:NM_011216:exon6:c.A1285G:p.S429G"	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	137750554	12A2p6	cell line	sgMsh2	137750554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	164	413	67	0.162227603	exonic	Strap	nonsynonymous SNV	Strap:NM_011499:exon10:c.A995G:p.E332G	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.945423	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr6	138657515	12A2p6	cell line	sgMsh2	138657515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	115	0	0	NA	exonic	Igbp1b	synonymous SNV	Igbp1b:NM_015777:exon1:c.A930G:p.Q310Q	6qG1	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999244	TTT	synonymous	NA	NA	NA	NA
M6	chr6	139494878	12A2p6	cell line	sgMsh2	139494878	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	170	0	0	NA	exonic	Rergl	nonsynonymous SNV	Rergl:NM_001128090:exon4:c.T272C:p.F91S	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.00E-09	AAA	nonsynonymous	AAGG	8	AAGGAAGG	NA
M6	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	125	28	2	0.071428571	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	7.61E-09	ATT	synonymous	NA	NA	NA	NA
M6	chr6	140042058	12A2p6	cell line	sgMsh2	140042058	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	214	0	0	NA	exonic	Capza3	nonsynonymous SNV	Capza3:NM_007605:exon1:c.T382C:p.Y128H	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	140643981	12A2p6	cell line	sgMsh2	140643981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	238	172	38	0.220930233	exonic	Aebp2	nonsynonymous SNV	"Aebp2:NM_001005605:exon5:c.T1187C:p.L396P,Aebp2:NM_001309436:exon5:c.T521C:p.L174P,Aebp2:NM_001309437:exon5:c.T521C:p.L174P,Aebp2:NM_009637:exon5:c.T1187C:p.L396P,Aebp2:NM_178803:exon5:c.T521C:p.L174P"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.34E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	141481133	12A2p6	cell line	sgMsh2	141481133	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	128	0	0	NA	exonic	Pde3a	synonymous SNV	Pde3a:NM_018779:exon9:c.T2019A:p.A673A	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	CTC	synonymous	NA	NA	NA	NA
M6	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	203	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.02E-09	AAA	synonymous	NA	NA	NA	NA
M6	chr6	141812743	12A2p6	cell line	sgMsh2	141812743	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	123	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon13:c.1541delT:p.L514fs*0,Slco1a4:NM_030687:exon14:c.1541delT:p.L514fs*0"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M6	chr6	141918548	12A2p6	cell line	sgMsh2	141918548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	119	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon11:c.A1525G:p.K509E	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.652296	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	141939985	12A2p6	cell line	sgMsh2	141939985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	326	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon3:c.T313C:p.S105P	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.07E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr6	141972220	12A2p6	cell line	sgMsh2	141972220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	63	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon14:c.T1929C:p.D643D	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.675959927	2	0.6910465	CAT	synonymous	NA	NA	NA	NA
M6	chr6	142003500	12A2p6	cell line	sgMsh2	142003500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	155	0	0	NA	exonic	Gm6614	nonsynonymous SNV	Gm6614:NM_001081318:exon2:c.T149C:p.L50P	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9996022	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	142103105	12A2p6	cell line	sgMsh2	142103105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	183	0	0	NA	exonic	Slco1a6	synonymous SNV	"Slco1a6:NM_001381930:exon8:c.T948C:p.P316P,Slco1a6:NM_023718:exon9:c.T948C:p.P316P"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	TAG	synonymous	NA	NA	NA	NA
M6	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Vardict	2	0.035	396	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	142303310	12A2p6	cell line	sgMsh2	142303310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	119	0	0	NA	exonic	Iapp	nonsynonymous SNV	Iapp:NM_010491:exon3:c.A88G:p.S30G	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.6588236	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	142367356	12A2p6	cell line	sgMsh2	142367356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	227	45	8	0.177777778	exonic	Recql	synonymous SNV	"Recql:NM_001204906:exon10:c.T1134C:p.I378I,Recql:NM_001204907:exon10:c.T1134C:p.I378I,Recql:NM_001355511:exon10:c.T1134C:p.I378I,Recql:NM_023042:exon10:c.T1134C:p.I378I"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.72E-08	CAA	synonymous	NA	NA	NA	NA
M6	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	248	29	2	0.068965517	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr6	142454479	12A2p6	cell line	sgMsh2	142454479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	169	0	0	NA	exonic	Gys2	synonymous SNV	Gys2:NM_145572:exon7:c.A1005G:p.S335S	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9998284	TTG	synonymous	TTTG	8	TTTGTTTG	NA
M6	chr6	142459492	12A2p6	cell line	sgMsh2	142459492	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	150	0	0	NA	exonic	Gys2	nonsynonymous SNV	Gys2:NM_145572:exon4:c.C568A:p.L190I	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.74E-08	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr6	142645892	12A2p6	cell line	sgMsh2	142645892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	226	0	0	NA	exonic	Abcc9	synonymous SNV	"Abcc9:NM_001044720:exon20:c.A2370G:p.G790G,Abcc9:NM_001310143:exon20:c.A2370G:p.G790G,Abcc9:NM_021042:exon20:c.A2304G:p.G768G,Abcc9:NM_011511:exon21:c.A2409G:p.G803G,Abcc9:NM_021041:exon21:c.A2409G:p.G803G"	6qG2	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.04E-08	CTC	synonymous	NA	NA	NA	NA
M6	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.396	193	15	2	0.133333333	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M6	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Vardict	2	0.06	73	3	0	0	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.994287	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr6	146180313	12A2p6	cell line	sgMsh2	146180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	228	3	0	0	exonic	Itpr2	nonsynonymous SNV	"Itpr2:NM_010586:exon48:c.T6713C:p.V2238A,Itpr2:NM_019923:exon49:c.T6812C:p.V2271A"	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	4.43E-08	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	147535727	12A2p6	cell line	sgMsh2	147535727	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	134	33	0	0	exonic	Ccdc91	frameshift deletion	"Ccdc91:NM_001355713:exon5:c.410delA:p.I139Yfs*24,Ccdc91:NM_025911:exon5:c.410delA:p.I139Yfs*24,Ccdc91:NM_001355714:exon6:c.320delA:p.I109Yfs*24,Ccdc91:NM_001355715:exon7:c.320delA:p.I109Yfs*24"	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr6	148204819	12A2p6	cell line	sgMsh2	148204819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	199	160	40	0.25	exonic	Ergic2	nonsynonymous SNV	Ergic2:NM_026168:exon3:c.A172G:p.T58A	6qG3	chr6-3373003-148425959	5	5	0	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr6	148846202	12A2p6	cell line	sgMsh2	148846202	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	90	12	3	0.25	exonic	Caprin2	nonsynonymous SNV	"Caprin2:NM_001301351:exon16:c.A1757T:p.Q586L,Caprin2:NM_181541:exon17:c.A2414T:p.Q805L"	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	nonsynonymous	TGCAGC	14	TGCAGCTGCAGCTG	NA
M6	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	184	6	0	0	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M6	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	177	81	19	0.234567901	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr6	149511934	12A2p6	cell line	sgMsh2	149511934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	175	22	7	0.318181818	exonic	Bicd1	nonsynonymous SNV	"Bicd1:NM_001112796:exon4:c.G822T:p.E274D,Bicd1:NM_009753:exon4:c.G822T:p.E274D"	6qG3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	3653248	12A2p6	cell line	sgMsh2	3653248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	171	113	31	0.274336283	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.T532C:p.Y178H	7qA1	chr7-3489139-3716106	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999981	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	135	122	5	0.040983607	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-3716106	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9996772	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	97	35	2	0.057142857	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-3716106	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9998645	CAG	synonymous	NA	NA	NA	NA
M6	chr7	3704668	12A2p6	cell line	sgMsh2	3704668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	118	4535	842	0.185667034	exonic	Rps9	synonymous SNV	Rps9:NM_029767:exon3:c.A120G:p.K40K	7qA1	chr7-3489139-3716106	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	AAC	synonymous	NA	NA	NA	NA
M6	chr7	4128199	12A2p6	cell line	sgMsh2	4128199	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	56	0	0	NA	exonic	Ttyh1	stopgain	"Ttyh1:NM_001001454:exon5:c.T668A:p.L223X,Ttyh1:NM_001109765:exon5:c.T668A:p.L223X,Ttyh1:NM_001305822:exon5:c.T173A:p.L58X,Ttyh1:NM_021324:exon5:c.T668A:p.L223X"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9962884	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	4238628	12A2p6	cell line	sgMsh2	4238628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	123	0	0	NA	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon4:c.T425C:p.L142P	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Vardict	2	0.028	421	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	CCT	synonymous	NA	NA	NA	NA
M6	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.042	213	16	0	0	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr7	4477607	12A2p6	cell line	sgMsh2	4477607	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	156	16	0	0	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon16:c.A1559C:p.Q520P,Eps8l1:NM_001374622:exon16:c.A1742C:p.Q581P,Eps8l1:NM_026146:exon16:c.A1559C:p.Q520P"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999995	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	4521893	12A2p6	cell line	sgMsh2	4521893	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	51	0	0	NA	exonic	Tnni3	nonsynonymous SNV	Tnni3:NM_009406:exon3:c.C34A:p.P12T	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	4836502	12A2p6	cell line	sgMsh2	4836502	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.181	25	0	0	NA	exonic	Shisa7	synonymous SNV	"Shisa7:NM_001290291:exon2:c.A222T:p.A74A,Shisa7:NM_172737:exon2:c.A222T:p.A74A"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9644548	CTG	synonymous	NA	NA	NA	NA
M6	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Vardict	2	0.04	127	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	4.27E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	5008766	12A2p6	cell line	sgMsh2	5008766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	63	15	5	0.333333333	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A752G:p.K251R,Fiz1:NM_001110329:exon3:c.A752G:p.K251R,Fiz1:NM_001110330:exon3:c.A752G:p.K251R,Fiz1:NM_001360241:exon3:c.A752G:p.K251R,Fiz1:NM_001360242:exon3:c.A752G:p.K251R,Fiz1:NM_001360243:exon3:c.A752G:p.K251R,Fiz1:NM_011813:exon3:c.A752G:p.K251R"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.7788264	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	5075496	12A2p6	cell line	sgMsh2	5075496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	85	231	25	0.108225108	exonic	U2af2	nonsynonymous SNV	"U2af2:NM_001205231:exon11:c.T1073C:p.L358P,U2af2:NM_133671:exon11:c.T1061C:p.L354P"	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9876556	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	164	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999332	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	5410476	12A2p6	cell line	sgMsh2	5410476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	288	0	0	NA	exonic	Vmn1r58	nonsynonymous SNV	Vmn1r58:NM_030739:exon2:c.A754G:p.I252V	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.82E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	495	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.139483794	3	1	AGC	synonymous	NA	NA	NA	NA
M6	chr7	6316961	12A2p6	cell line	sgMsh2	6316961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	113	10	3	0.3	exonic	Zfp583	nonsynonymous SNV	Zfp583:NM_001033249:exon5:c.T1051C:p.Y351H	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9997409	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	333	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.12338951	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	6514657	12A2p6	cell line	sgMsh2	6514657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	90	0	0	NA	exonic	Olfr1349	synonymous SNV	Olfr1349:NM_207136:exon1:c.A771G:p.V257V	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	TTA	synonymous	NA	NA	NA	NA
M6	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Vardict	2	0.037	155	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.24E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	188	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.39E-09	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	6710043	12A2p6	cell line	sgMsh2	6710043	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	190	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.C2179T:p.P727S	7qA1	chr7-3896664-7472715	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr7	7876665	12A2p6	cell line	sgMsh2	7876665	T	-	Deletion	Strelka2;Vardict	2	0.0587	426	0	0	NA	exonic	Vmn2r36	frameshift deletion	Vmn2r36:NM_001105068:exon6:c.2547delA:p.K849Nfs*4	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	0.31491149	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr7	7889239	12A2p6	cell line	sgMsh2	7889239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	60	0	0	NA	exonic	Vmn2r36	nonsynonymous SNV	Vmn2r36:NM_001105068:exon3:c.T1069C:p.Y357H	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	9928427	12A2p6	cell line	sgMsh2	9928427	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.269	94	0	0	NA	exonic	Vmn2r48	synonymous SNV	Vmn2r48:NM_001105152:exon6:c.T1765C:p.L589L	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	AAG	synonymous	NA	NA	NA	NA
M6	chr7	10037612	12A2p6	cell line	sgMsh2	10037612	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	250	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.A2209T:p.I737F	7qA1	chr7-7473826-10105930	3.38719038	2.38719038	1	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.11E-08	ATG	nonsynonymous	ATG	9	ATGATGATG	NA
M6	chr7	10168971	12A2p6	cell line	sgMsh2	10168971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	247	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.A1529G:p.K510R	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.33E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	10274592	12A2p6	cell line	sgMsh2	10274592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	192	0	0	NA	exonic	Vmn1r66	synonymous SNV	Vmn1r66:NM_134230:exon1:c.C513T:p.Y171Y	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	AGT	synonymous	NA	NA	NA	NA
M6	chr7	10447363	12A2p6	cell line	sgMsh2	10447363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	317	0	0	NA	exonic	Vmn1r67	nonsynonymous SNV	Vmn1r67:NM_134229:exon1:c.G553A:p.V185M	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.12E-09	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	10447706	12A2p6	cell line	sgMsh2	10447706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	144	0	0	NA	exonic	Vmn1r67	stopgain	Vmn1r67:NM_134229:exon1:c.G896A:p.W299X	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999889	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	10715271	12A2p6	cell line	sgMsh2	10715271	C	A	SNV	Mutect2;Vardict	2	0.034	188	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C1400A:p.S467Y,Nlrp4b:NM_172481:exon4:c.C1400A:p.S467Y"	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	10748632	12A2p6	cell line	sgMsh2	10748632	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	128	0	0	NA	exonic	Vmn1r71	nonsynonymous SNV	Vmn1r71:NM_145848:exon1:c.C128T:p.T43I	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	11669849	12A2p6	cell line	sgMsh2	11669849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	221	0	0	NA	exonic	Vmn1r72	nonsynonymous SNV	Vmn1r72:NM_145843:exon1:c.A671G:p.Y224C	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9999935	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	12304990	12A2p6	cell line	sgMsh2	12304990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	194	0	0	NA	exonic	Vmn1r82	synonymous SNV	Vmn1r82:NM_134234:exon1:c.A186G:p.G62G	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GAA	synonymous	NA	NA	NA	NA
M6	chr7	12305304	12A2p6	cell line	sgMsh2	12305304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	284	0	0	NA	exonic	Vmn1r82	nonsynonymous SNV	Vmn1r82:NM_134234:exon1:c.A500G:p.Y167C	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.07E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	12632429	12A2p6	cell line	sgMsh2	12632429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	465	0	0	NA	exonic	Vmn2r54	nonsynonymous SNV	Vmn2r54:NM_001384946:exon3:c.T793C:p.C265R	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	12670730	12A2p6	cell line	sgMsh2	12670730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	435	0	0	NA	exonic	Vmn2r55	nonsynonymous SNV	"Vmn2r55:NM_001104645:exon2:c.T745C:p.F249L,Vmn2r55:NM_001374650:exon3:c.T961C:p.F321L"	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	12848937	12A2p6	cell line	sgMsh2	12848937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	213	71	7	0.098591549	exonic	Zfp110	nonsynonymous SNV	"Zfp110:NM_001360576:exon8:c.A1511G:p.K504R,Zfp110:NM_022981:exon8:c.A1511G:p.K504R"	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	12890100	12A2p6	cell line	sgMsh2	12890100	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	157	5	1	0.2	exonic	Zfp128	nonsynonymous SNV	Zfp128:NM_153802:exon4:c.C394A:p.P132T	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.999984	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	113	3	0	0	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9349902	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	13131970	12A2p6	cell line	sgMsh2	13131970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	221	0	0	NA	exonic	Vmn1r87	nonsynonymous SNV	Vmn1r87:NM_134227:exon1:c.A389G:p.N130S	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	13219428	12A2p6	cell line	sgMsh2	13219428	T	C	SNV	Mutect2;Vardict	2	0.051	231	0	0	NA	exonic	Vmn1r89	synonymous SNV	Vmn1r89:NM_134226:exon1:c.T90C:p.Y30Y	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.34E-09	ATG	synonymous	TGTA	9	TGTATGTAT	NA
M6	chr7	13261283	12A2p6	cell line	sgMsh2	13261283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	112	6	1	0.166666667	exonic	Zswim9	nonsynonymous SNV	Zswim9:NM_177312:exon4:c.A946G:p.I316V	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.7566731	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	13292474	12A2p6	cell line	sgMsh2	13292474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	125	111	20	0.18018018	exonic	Lig1	synonymous SNV	"Lig1:NM_001083188:exon11:c.C867A:p.A289A,Lig1:NM_001199310:exon11:c.C867A:p.A289A,Lig1:NM_010715:exon11:c.C867A:p.A289A"	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	1	0.9975377	CCG	synonymous	NA	NA	NA	NA
M6	chr7	13931730	12A2p6	cell line	sgMsh2	13931730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	458	0	0	NA	exonic	Sult2a4	stopgain	Sult2a4:NM_001101534:exon4:c.G507A:p.W169X	7qA1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	1.06E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	35	363	13	0.035812672	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	1	0.5799898	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	196	128	5	0.0390625	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	9.38E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	16865872	12A2p6	cell line	sgMsh2	16865872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	147	26	5	0.192307692	exonic	Prkd2	synonymous SNV	"Prkd2:NM_178900:exon16:c.T2259C:p.N753N,Prkd2:NM_001252458:exon17:c.T2259C:p.N753N"	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999909	ATG	synonymous	GAGGAC	12	GAGGACGAGGAC	NA
M6	chr7	16894986	12A2p6	cell line	sgMsh2	16894986	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	152	0	0	NA	exonic	Gng8	nonsynonymous SNV	Gng8:NM_010320:exon3:c.G43A:p.V15M	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	8.82E-09	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	17048661	12A2p6	cell line	sgMsh2	17048661	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	61	1	0	0	exonic	Hif3a	frameshift deletion	"Hif3a:NM_001162950:exon8:c.978delG:p.R327Gfs*13,Hif3a:NM_016868:exon8:c.972delG:p.R325Gfs*13"	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	NA	NA	GCC	frameshift	GCCCC	10	GCCCCGCCCC	-1
M6	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	288	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	ACA	synonymous	NA	NA	NA	NA
M6	chr7	17917286	12A2p6	cell line	sgMsh2	17917286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	221	0	0	NA	exonic	Gm5155	synonymous SNV	Gm5155:NM_001378684:exon9:c.T2721C:p.D907D	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATA	synonymous	T	5	TTTTT	NA
M6	chr7	18013057	12A2p6	cell line	sgMsh2	18013057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	108	0	0	NA	exonic	Ceacam13	stopgain	"Ceacam13:NM_027210:exon3:c.T434A:p.L145X,Ceacam13:NM_028171:exon3:c.T434A:p.L145X"	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.99988	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	18067508	12A2p6	cell line	sgMsh2	18067508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	254	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon2:c.A411G:p.E137E,Ceacam12:NM_001162524:exon2:c.A411G:p.E137E,Ceacam12:NM_026087:exon2:c.A411G:p.E137E"	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	8.77E-09	AAT	synonymous	NA	NA	NA	NA
M6	chr7	18069123	12A2p6	cell line	sgMsh2	18069123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	143	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon3:c.T453C:p.P151P,Ceacam12:NM_001162524:exon3:c.T453C:p.P151P,Ceacam12:NM_026087:exon3:c.T453C:p.P151P"	7qA2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	CTA	synonymous	NA	NA	NA	NA
M6	chr7	18612054	12A2p6	cell line	sgMsh2	18612054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	453	0	0	NA	exonic	Psg23	nonsynonymous SNV	Psg23:NM_020261:exon3:c.T715C:p.Y239H	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	18681013	12A2p6	cell line	sgMsh2	18681013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	409	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.T956C:p.I319T	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	19159634	12A2p6	cell line	sgMsh2	19159634	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	101	0	0	NA	exonic	Gipr	nonsynonymous SNV	Gipr:NM_001080815:exon12:c.A1021G:p.T341A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	0.9999968	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	19179249	12A2p6	cell line	sgMsh2	19179249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.184	26	0	0	NA	exonic	Eml2	synonymous SNV	Eml2:NM_001347582:exon2:c.T171C:p.S57S	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.970627	GTG	synonymous	NA	NA	NA	NA
M6	chr7	19179326	12A2p6	cell line	sgMsh2	19179326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	34	0	0	NA	exonic	Eml2	nonsynonymous SNV	Eml2:NM_001347582:exon2:c.A248G:p.K83R	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9795545	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	19371223	12A2p6	cell line	sgMsh2	19371223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	75	15	4	0.266666667	exonic	Ppp1r13l	nonsynonymous SNV	Ppp1r13l:NM_001010836:exon7:c.A919G:p.T307A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	19448648	12A2p6	cell line	sgMsh2	19448648	T	G	SNV	Mutect2;Vardict	2	0.072	58	59	3	0.050847458	exonic	Mark4	nonsynonymous SNV	"Mark4:NM_001368427:exon3:c.A263C:p.K88T,Mark4:NM_172279:exon3:c.A263C:p.K88T"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.8701959	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	166	240	11	0.045833333	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9999888	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	19944783	12A2p6	cell line	sgMsh2	19944783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	6	0	0	exonic	Igsf23	synonymous SNV	"Igsf23:NM_001364024:exon2:c.A219G:p.E73E,Igsf23:NM_027308:exon2:c.A195G:p.E65E,Igsf23:NM_001364025:exon3:c.A81G:p.E27E"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	CTT	synonymous	NA	NA	NA	NA
M6	chr7	21260202	12A2p6	cell line	sgMsh2	21260202	T	A	SNV	Mutect2;Vardict	2	0.073	107	0	0	NA	exonic	Vmn1r124	nonsynonymous SNV	Vmn1r124:NM_001166757:exon1:c.A416T:p.N139I	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9283543	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	21272384	12A2p6	cell line	sgMsh2	21272384	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	257	0	0	NA	exonic	Vmn1r125	nonsynonymous SNV	Vmn1r125:NM_001166740:exon1:c.C206T:p.T69I	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	7.37E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr7	23541176	12A2p6	cell line	sgMsh2	23541176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	458	0	0	NA	exonic	Vmn1r168	nonsynonymous SNV	Vmn1r168:NM_001166842:exon1:c.A457G:p.I153V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.99802	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	23866409	12A2p6	cell line	sgMsh2	23866409	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	213	0	0	NA	exonic	Vmn1r177	nonsynonymous SNV	Vmn1r177:NM_206872:exon1:c.T41A:p.V14E	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9936854	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	23952621	12A2p6	cell line	sgMsh2	23952621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	292	0	0	NA	exonic	Vmn1r180	nonsynonymous SNV	Vmn1r180:NM_206869:exon1:c.A208G:p.T70A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.63E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	23952668	12A2p6	cell line	sgMsh2	23952668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	310	0	0	NA	exonic	Vmn1r180	synonymous SNV	Vmn1r180:NM_206869:exon1:c.T255C:p.T85T	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.19E-09	CTG	synonymous	NA	NA	NA	NA
M6	chr7	24104956	12A2p6	cell line	sgMsh2	24104956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	165	19	0	0	exonic	Zfp180	nonsynonymous SNV	"Zfp180:NM_172483:exon3:c.T274C:p.F92L,Zfp180:NM_001289637:exon4:c.T727C:p.F243L,Zfp180:NM_001045486:exon5:c.T799C:p.F267L,Zfp180:NM_001289640:exon5:c.T697C:p.F233L,Zfp180:NM_001289641:exon5:c.T619C:p.F207L,Zfp180:NM_001289634:exon6:c.T727C:p.F243L"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	2	0.6707739	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	24140735	12A2p6	cell line	sgMsh2	24140735	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	158	23	7	0.304347826	exonic	Zfp235	nonsynonymous SNV	"Zfp235:NM_019941:exon5:c.A578G:p.N193S,Zfp235:NM_001360465:exon6:c.A788G:p.N263S"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	24502703	12A2p6	cell line	sgMsh2	24502703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	173	11	2	0.181818182	exonic	Cadm4	synonymous SNV	Cadm4:NM_153112:exon8:c.T966C:p.P322P	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	CTT	synonymous	NA	NA	NA	NA
M6	chr7	24760286	12A2p6	cell line	sgMsh2	24760286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	76	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon1:c.A1G:p.M1V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	24908411	12A2p6	cell line	sgMsh2	24908411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	66	65	17	0.261538462	exonic	Arhgef1	nonsynonymous SNV	"Arhgef1:NM_001130150:exon4:c.A206G:p.E69G,Arhgef1:NM_001130151:exon4:c.A206G:p.E69G,Arhgef1:NM_001130152:exon4:c.A206G:p.E69G,Arhgef1:NM_001130153:exon4:c.A206G:p.E69G,Arhgef1:NM_008488:exon4:c.A206G:p.E69G"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	25015880	12A2p6	cell line	sgMsh2	25015880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	83	18	4	0.222222222	exonic	Grik5	synonymous SNV	"Grik5:NM_001360067:exon16:c.T1392C:p.A464A,Grik5:NM_008168:exon16:c.T1965C:p.A655A"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9993745	CAG	synonymous	NA	NA	NA	NA
M6	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	123	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999555	CGC	synonymous	C	5	CCCCC	NA
M6	chr7	25233854	12A2p6	cell line	sgMsh2	25233854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	182	156	31	0.198717949	exonic	Gsk3a	nonsynonymous SNV	Gsk3a:NM_001031667:exon3:c.T529C:p.Y177H	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	2	0.727117	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	25271203	12A2p6	cell line	sgMsh2	25271203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	63	45	7	0.155555556	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.T358C:p.Y120H	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr7	25271985	12A2p6	cell line	sgMsh2	25271985	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	38	16	1	0.0625	exonic	Cic	synonymous SNV	Cic:NM_001302811:exon2:c.T1140A:p.A380A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9879123	CTG	synonymous	NA	NA	NA	NA
M6	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	60	32	8	0.25	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9879575	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	25295207	12A2p6	cell line	sgMsh2	25295207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	108	245	61	0.248979592	exonic	Pafah1b3	nonsynonymous SNV	"Pafah1b3:NM_001357350:exon5:c.A581G:p.Y194C,Pafah1b3:NM_008776:exon6:c.A581G:p.Y194C"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9998702	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	81	17	0	0	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6788728	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	25395550	12A2p6	cell line	sgMsh2	25395550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	151	28	2	0.071428571	exonic	Lipe	synonymous SNV	Lipe:NM_010719:exon1:c.A60G:p.E20E	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	CTT	synonymous	NA	NA	NA	NA
M6	chr7	25538649	12A2p6	cell line	sgMsh2	25538649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	193	0	0	NA	exonic	Ceacam2	nonsynonymous SNV	"Ceacam2:NM_001113368:exon2:c.A349G:p.T117A,Ceacam2:NM_001113369:exon2:c.A349G:p.T117A,Ceacam2:NM_007543:exon2:c.A349G:p.T117A"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	25733271	12A2p6	cell line	sgMsh2	25733271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	245	308	66	0.214285714	exonic	Hnrnpul1	synonymous SNV	"Hnrnpul1:NM_001360789:exon9:c.T1065C:p.G355G,Hnrnpul1:NM_144922:exon9:c.T1365C:p.G455G"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	TAC	synonymous	NA	NA	NA	NA
M6	chr7	25761460	12A2p6	cell line	sgMsh2	25761460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	131	647	128	0.197836167	exonic	Axl	nonsynonymous SNV	"Axl:NM_001190975:exon16:c.A1832G:p.K611R,Axl:NM_001190974:exon17:c.A2096G:p.K699R,Axl:NM_009465:exon18:c.A2123G:p.K708R"	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9990033	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	26080708	12A2p6	cell line	sgMsh2	26080708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	196	0	0	NA	exonic	Cyp2b13	synonymous SNV	Cyp2b13:NM_007813:exon2:c.T282C:p.A94A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999996	CTT	synonymous	T	5	TTTTT	NA
M6	chr7	26382396	12A2p6	cell line	sgMsh2	26382396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	153	0	0	NA	exonic	Nlrp9c	nonsynonymous SNV	Nlrp9c:NM_001042612:exon4:c.A1904G:p.H635R	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999939	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Vardict	2	0.05	196	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	5.33E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	27157598	12A2p6	cell line	sgMsh2	27157598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	129	1	0	0	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon7:c.A986G:p.Y329C	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9997886	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	27157834	12A2p6	cell line	sgMsh2	27157834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	128	1	0	0	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon8:c.T1121C:p.V374A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	27233707	12A2p6	cell line	sgMsh2	27233707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	101	27	6	0.222222222	exonic	Coq8b	synonymous SNV	Coq8b:NM_133770:exon3:c.A111G:p.P37P	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8282366	CAT	synonymous	NA	NA	NA	NA
M6	chr7	27240043	12A2p6	cell line	sgMsh2	27240043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	234	19	1	0.052631579	exonic	Coq8b	nonsynonymous SNV	Coq8b:NM_133770:exon7:c.A497G:p.N166S	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.01E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	27264930	12A2p6	cell line	sgMsh2	27264930	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	100	19	0	0	exonic	Numbl	nonsynonymous SNV	Numbl:NM_010950:exon3:c.C164G:p.A55G	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.999597	GCC	nonsynonymous	AGCC	8	AGCCAGCC	NA
M6	chr7	27516896	12A2p6	cell line	sgMsh2	27516896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	64	7	1	0.142857143	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.A1238C:p.E413A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9978087	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	97	9	0	0	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.402357099	3	0.8501705	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M6	chr7	27528950	12A2p6	cell line	sgMsh2	27528950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	48	2	1	0.5	exonic	Hipk4	nonsynonymous SNV	Hipk4:NM_001033315:exon3:c.T824C:p.V275A	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9937198	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	27673702	12A2p6	cell line	sgMsh2	27673702	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	51	24	1	0.041666667	exonic	Map3k10	frameshift deletion	Map3k10:NM_001290528:exon1:c.323delG:p.G108Afs*14	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr7	28093319	12A2p6	cell line	sgMsh2	28093319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	88	10	0	0	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon8:c.A2747G:p.N916S	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	28150766	12A2p6	cell line	sgMsh2	28150766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	178	2	0	0	exonic	9530053A07Rik	synonymous SNV	9530053A07Rik:NM_001164655:exon10:c.A3636G:p.S1212S	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999988	CAG	synonymous	NA	NA	NA	NA
M6	chr7	28155429	12A2p6	cell line	sgMsh2	28155429	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	219	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon14:c.T5479C:p.C1827R	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	126	193	3	0.015544041	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	2	0.517898	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	28540915	12A2p6	cell line	sgMsh2	28540915	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	132	0	0	NA	exonic	Sycn	synonymous SNV	Sycn:NM_026716:exon1:c.C6A:p.S2S	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	CCC	synonymous	NA	NA	NA	NA
M6	chr7	29045605	12A2p6	cell line	sgMsh2	29045605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	82	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon82:c.T11601C:p.T3867T	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.999291	CAG	synonymous	NA	NA	NA	NA
M6	chr7	29061567	12A2p6	cell line	sgMsh2	29061567	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	50	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon65:c.A9629C:p.E3210A	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.976287	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	187	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	29074854	12A2p6	cell line	sgMsh2	29074854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	84	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon44:c.T7154C:p.I2385T	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	29087403	12A2p6	cell line	sgMsh2	29087403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	61	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon33:c.A4764G:p.P1588P	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9973297	CTG	synonymous	NA	NA	NA	NA
M6	chr7	29096187	12A2p6	cell line	sgMsh2	29096187	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.258	63	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon25:c.T3277C:p.F1093L	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.148	28	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8583289	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	29185076	12A2p6	cell line	sgMsh2	29185076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	333	0	0	NA	exonic	Catsperg1	nonsynonymous SNV	"Catsperg1:NM_001164658:exon24:c.T2678C:p.V893A,Catsperg1:NM_001368407:exon24:c.T2837C:p.V946A"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.04E-09	CAC	nonsynonymous	ACC	16	ACCACCACCCACCACC	NA
M6	chr7	29225257	12A2p6	cell line	sgMsh2	29225257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	83	3	0	0	exonic	Kcnk6	nonsynonymous SNV	Kcnk6:NM_001033525:exon3:c.T721C:p.Y241H	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.888852	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	29245728	12A2p6	cell line	sgMsh2	29245728	T	G	SNV	Mutect2;Vardict	2	0.057	74	33	1	0.03030303	exonic	Yif1b	nonsynonymous SNV	"Yif1b:NM_001110201:exon6:c.T584G:p.V195G,Yif1b:NM_001357664:exon6:c.T569G:p.V190G,Yif1b:NM_001357666:exon6:c.T503G:p.V168G,Yif1b:NM_001357668:exon6:c.T503G:p.V168G,Yif1b:NM_029887:exon6:c.T593G:p.V198G"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9974429	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	30057402	12A2p6	cell line	sgMsh2	30057402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	89	19	2	0.105263158	exonic	Zfp82	nonsynonymous SNV	"Zfp82:NM_001252519:exon6:c.T254C:p.L85P,Zfp82:NM_177889:exon7:c.T344C:p.L115P"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	30190555	12A2p6	cell line	sgMsh2	30190555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	145	1274	241	0.189167975	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon8:c.T528C:p.A176A	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999896	TAG	synonymous	NA	NA	NA	NA
M6	chr7	30241548	12A2p6	cell line	sgMsh2	30241548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	83	9	3	0.333333333	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon31:c.A3854G:p.N1285S	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9974511	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Vardict	2	0.049	122	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999968	CTG	synonymous	NA	NA	NA	NA
M6	chr7	30569294	12A2p6	cell line	sgMsh2	30569294	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	193	57	18	0.315789474	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon37:c.T8036G:p.I2679S,Kmt2b:NM_029274:exon37:c.T8009G:p.I2670S"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	30645046	12A2p6	cell line	sgMsh2	30645046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	27	85	17	0.2	exonic	Rbm42	nonsynonymous SNV	Rbm42:NM_133693:exon7:c.T791C:p.V264A	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9753155	CAC	nonsynonymous	CCACTG	13	CCACTGCCACTGC	NA
M6	chr7	30736625	12A2p6	cell line	sgMsh2	30736625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	202	0	0	NA	exonic	Gapdhs	nonsynonymous SNV	"Gapdhs:NM_001290631:exon4:c.A539G:p.Y180C,Gapdhs:NM_008085:exon4:c.A533G:p.Y178C"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	30877545	12A2p6	cell line	sgMsh2	30877545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	244	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon3:c.T336C:p.C112C,Cd22:NM_001043317:exon5:c.T336C:p.C112C"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.60E-08	TAC	synonymous	NA	NA	NA	NA
M6	chr7	30922524	12A2p6	cell line	sgMsh2	30922524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	313	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.T236G:p.I79S	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.16E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	34227208	12A2p6	cell line	sgMsh2	34227208	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	91	522	109	0.208812261	exonic	Gpi1	synonymous SNV	Gpi1:NM_008155:exon4:c.G312T:p.R104R	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TCC	synonymous	NA	NA	NA	NA
M6	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	262	85	4	0.047058824	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.58E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	270	108	3	0.027777778	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.096	100	55	2	0.036363636	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9945691	CAT	synonymous	NA	NA	NA	NA
M6	chr7	35120404	12A2p6	cell line	sgMsh2	35120404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	78	21	1	0.047619048	exonic	Cebpa	nonsynonymous SNV	"Cebpa:NM_001287514:exon1:c.T1097C:p.V366A,Cebpa:NM_001287515:exon1:c.T944C:p.V315A,Cebpa:NM_001287521:exon1:c.T635C:p.V212A,Cebpa:NM_001287523:exon1:c.T347C:p.V116A,Cebpa:NM_007678:exon1:c.T986C:p.V329A"	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.9874734	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	35195149	12A2p6	cell line	sgMsh2	35195149	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	89	0	0	NA	exonic	Slc7a10	nonsynonymous SNV	Slc7a10:NM_017394:exon2:c.G232A:p.V78M	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	35206103	12A2p6	cell line	sgMsh2	35206103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Lrp3	nonsynonymous SNV	Lrp3:NM_001024707:exon4:c.A257G:p.N86S	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999634	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	50	42	1	0.023809524	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.8753254	ATA	synonymous	NA	NA	NA	NA
M6	chr7	35429212	12A2p6	cell line	sgMsh2	35429212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	87	22	0	0	exonic	Cep89	stopgain	Cep89:NM_028120:exon16:c.A1789T:p.K597X	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9990425	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	35555491	12A2p6	cell line	sgMsh2	35555491	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.154	27	4	1	0.25	exonic	Nudt19	nonsynonymous SNV	Nudt19:NM_033080:exon1:c.T314G:p.L105R	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.8906552	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	146	29	0	0	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	4.34E-08	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M6	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	150	55	2	0.036363636	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.09E-08	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	36771832	12A2p6	cell line	sgMsh2	36771832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	90	0	0	NA	exonic	Tshz3	stoploss	Tshz3:NM_172298:exon2:c.A3245G:p.X1082W	7qB2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.999316	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	38106650	12A2p6	cell line	sgMsh2	38106650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	13	1	0.076923077	exonic	Ccne1	synonymous SNV	Ccne1:NM_007633:exon3:c.A48G:p.E16E	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTT	synonymous	CTT	9	CTTCTTCTT	NA
M6	chr7	39537148	12A2p6	cell line	sgMsh2	39537148	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	109	3	1	0.333333333	exonic	Zfp619	nonsynonymous SNV	Zfp619:NM_001004139:exon4:c.A2601C:p.K867N	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9981	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	40993301	12A2p6	cell line	sgMsh2	40993301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	196	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G393A:p.L131L	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	TGG	synonymous	G	5	GGGGG	NA
M6	chr7	41044593	12A2p6	cell line	sgMsh2	41044593	G	A	SNV	Mutect2;MuSe;Vardict	3	0.06	239	0	0	NA	exonic	Gm4884	nonsynonymous SNV	Gm4884:NM_183166:exon3:c.G1985A:p.R662H	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999998	CGT	nonsynonymous	NA	NA	NA	NA
M6	chr7	41286204	12A2p6	cell line	sgMsh2	41286204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	301	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon2:c.A129G:p.P43P	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	2.28E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr7	41837597	12A2p6	cell line	sgMsh2	41837597	T	C	SNV	Mutect2;Vardict	2	0.038	373	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon6:c.A1873G:p.T625A	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	41862058	12A2p6	cell line	sgMsh2	41862058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	181	0	0	NA	exonic	Vmn2r58	synonymous SNV	Vmn2r58:NM_001105055:exon4:c.C1320T:p.F440F	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9735077	GGA	synonymous	NA	NA	NA	NA
M6	chr7	42047016	12A2p6	cell line	sgMsh2	42047016	T	C	SNV	Mutect2;Vardict	2	0.053	96	0	0	NA	exonic	Vmn2r59	nonsynonymous SNV	Vmn2r59:NM_001105056:exon2:c.A301G:p.I101V	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9998526	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	441	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	TAC	synonymous	NA	NA	NA	NA
M6	chr7	43464830	12A2p6	cell line	sgMsh2	43464830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	55	0	0	NA	exonic	Vsig10l	nonsynonymous SNV	"Vsig10l:NM_001290316:exon3:c.A575G:p.Q192R,Vsig10l:NM_001368881:exon3:c.A881G:p.Q294R"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9960359	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	127	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	44361088	12A2p6	cell line	sgMsh2	44361088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	73	0	0	NA	exonic	1700008O03Rik	synonymous SNV	1700008O03Rik:NM_027049:exon5:c.T357C:p.N119N	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987897	TAT	synonymous	NA	NA	NA	NA
M6	chr7	44461349	12A2p6	cell line	sgMsh2	44461349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	103	0	0	NA	exonic	Lrrc4b	nonsynonymous SNV	Lrrc4b:NM_198250:exon3:c.A644G:p.N215S	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999833	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	44542145	12A2p6	cell line	sgMsh2	44542145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	49	34	6	0.176470588	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon4:c.T416C:p.I139T	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9425602	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	44839809	12A2p6	cell line	sgMsh2	44839809	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	55	2	0	0	exonic	Il4i1;Il4i1b	stopgain	"Il4i1:NM_010215:exon8:c.997delT:p.L333fs*0,Il4i1b:NM_001171024:exon9:c.1021delT:p.L341fs*0"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	-1
M6	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	164	54	2	0.037037037	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9998842	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	44905812	12A2p6	cell line	sgMsh2	44905812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	123	108	15	0.138888889	exonic	Ap2a1	nonsynonymous SNV	"Ap2a1:NM_001077264:exon11:c.T1328C:p.V443A,Ap2a1:NM_007458:exon11:c.T1328C:p.V443A"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	45002309	12A2p6	cell line	sgMsh2	45002309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	34	11	0.323529412	exonic	Irf3	nonsynonymous SNV	Irf3:NM_016849:exon8:c.T1223C:p.V408A	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991299	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	45088550	12A2p6	cell line	sgMsh2	45088550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	93	2	2	1	exonic	Rcn3	synonymous SNV	"Rcn3:NM_001355045:exon3:c.G393A:p.G131G,Rcn3:NM_026555:exon3:c.G393A:p.G131G"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9996768	GCC	synonymous	NA	NA	NA	NA
M6	chr7	45304827	12A2p6	cell line	sgMsh2	45304827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	66	37	7	0.189189189	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon23:c.T3499C:p.Y1167H	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9980794	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	103	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9963413	CAT	synonymous	NA	NA	NA	NA
M6	chr7	45360546	12A2p6	cell line	sgMsh2	45360546	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	95	0	0	NA	exonic	Ppfia3	nonsynonymous SNV	Ppfia3:NM_029741:exon3:c.A332G:p.N111S	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	3	0.9989117	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	45360626	12A2p6	cell line	sgMsh2	45360626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	75	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon3:c.T252C:p.A84A	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	GAG	synonymous	NA	NA	NA	NA
M6	chr7	45369292	12A2p6	cell line	sgMsh2	45369292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	156	0	0	NA	exonic	Lin7b	nonsynonymous SNV	Lin7b:NM_011698:exon4:c.T287C:p.L96P	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999995	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	45518619	12A2p6	cell line	sgMsh2	45518619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	81	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon5:c.T454C:p.S152P,Tulp2:NM_001290998:exon5:c.T418C:p.S140P,Tulp2:NM_001290999:exon5:c.T454C:p.S152P,Tulp2:NM_001045555:exon8:c.T790C:p.S264P,Tulp2:NM_008807:exon8:c.T790C:p.S264P"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992862	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	157	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.9480168	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	45588276	12A2p6	cell line	sgMsh2	45588276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	155	258	50	0.19379845	exonic	Bcat2	nonsynonymous SNV	"Bcat2:NM_001243052:exon9:c.A845T:p.K282M,Bcat2:NM_009737:exon9:c.A965T:p.K322M"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999946	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	45650957	12A2p6	cell line	sgMsh2	45650957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	211	89	24	0.269662921	exonic	Fut2	synonymous SNV	"Fut2:NM_018876:exon2:c.T390C:p.N130N,Fut2:NM_001271993:exon3:c.T390C:p.N130N"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9993324	AAT	synonymous	NA	NA	NA	NA
M6	chr7	45712131	12A2p6	cell line	sgMsh2	45712131	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	104	67	13	0.194029851	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon5:c.G694A:p.V232M,Sphk2:NM_020011:exon5:c.G694A:p.V232M,Sphk2:NM_203280:exon6:c.G694A:p.V232M"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr7	45834817	12A2p6	cell line	sgMsh2	45834817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	67	1	0	0	exonic	Grin2d	synonymous SNV	Grin2d:NM_008172:exon10:c.C2253T:p.D751D	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9792656	CGT	synonymous	NA	NA	NA	NA
M6	chr7	45918149	12A2p6	cell line	sgMsh2	45918149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	79	58	14	0.24137931	exonic	Emp3	nonsynonymous SNV	"Emp3:NM_001146346:exon5:c.T409C:p.Y137H,Emp3:NM_010129:exon5:c.T409C:p.Y137H"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	45948460	12A2p6	cell line	sgMsh2	45948460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	46	4	1	0.25	exonic	Ccdc114	nonsynonymous SNV	"Ccdc114:NM_001364168:exon15:c.T1901C:p.L634P,Ccdc114:NM_001374632:exon15:c.T1901C:p.L634P"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	46033961	12A2p6	cell line	sgMsh2	46033961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	107	15	0.140186916	exonic	Nomo1	nonsynonymous SNV	Nomo1:NM_153057:exon1:c.T130C:p.S44P	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	46259908	12A2p6	cell line	sgMsh2	46259908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	141	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon17:c.T1801C:p.S601P	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	46287691	12A2p6	cell line	sgMsh2	46287691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon36:c.C4823T:p.P1608L	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9967036	CCT	nonsynonymous	C	5	CCCCC	NA
M6	chr7	46662185	12A2p6	cell line	sgMsh2	46662185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	51	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T132G:p.N44K,Tph1:NM_001276372:exon3:c.T132G:p.N44K,Tph1:NM_009414:exon3:c.T132G:p.N44K"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	46740785	12A2p6	cell line	sgMsh2	46740785	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	136	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.T288G:p.A96A,Saa1:NM_009117:exon4:c.T288G:p.A96A"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CAG	synonymous	NA	NA	NA	NA
M6	chr7	46740812	12A2p6	cell line	sgMsh2	46740812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	144	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.C261T:p.F87F,Saa1:NM_009117:exon4:c.C261T:p.F87F"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9993939	CGA	synonymous	NA	NA	NA	NA
M6	chr7	46741257	12A2p6	cell line	sgMsh2	46741257	T	C	SNV	Mutect2;Vardict	2	0.047	173	0	0	NA	exonic	Saa1	nonsynonymous SNV	"Saa1:NM_001357493:exon3:c.A229G:p.S77G,Saa1:NM_009117:exon3:c.A229G:p.S77G"	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	7.69E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	47008133	12A2p6	cell line	sgMsh2	47008133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	57	58	16	0.275862069	exonic	Spty2d1	nonsynonymous SNV	Spty2d1:NM_175318:exon1:c.T2C:p.M1T	7qB3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9965248	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	48875619	12A2p6	cell line	sgMsh2	48875619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	221	41	6	0.146341463	exonic	E2f8	nonsynonymous SNV	"E2f8:NM_001013368:exon5:c.T604C:p.Y202H,E2f8:NM_001360812:exon5:c.T604C:p.Y202H"	7qB4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999991	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	49781143	12A2p6	cell line	sgMsh2	49781143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	39	53	7	0.132075472	exonic	Prmt3	synonymous SNV	Prmt3:NM_133740:exon4:c.T264C:p.I88I	7qB4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9767547	TTA	synonymous	NA	NA	NA	NA
M6	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Vardict	2	0.049	109	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.262873305	3	0.9999887	GTG	synonymous	GT	8	GTGTGTGT	NA
M6	chr7	51546678	12A2p6	cell line	sgMsh2	51546678	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	180	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon6:c.A314T:p.K105I,Ano5:NM_177694:exon7:c.A356T:p.K119I"	7qB4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	55979873	12A2p6	cell line	sgMsh2	55979873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	72	20	4	0.2	exonic	Nipa1	nonsynonymous SNV	Nipa1:NM_153578:exon5:c.T491C:p.L164P	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9768385	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	56984956	12A2p6	cell line	sgMsh2	56984956	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	73	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon4:c.C478A:p.L160I	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987897	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	57408671	12A2p6	cell line	sgMsh2	57408671	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	121	0	0	NA	exonic	Gabra5	stopgain	"Gabra5:NM_001362161:exon10:c.T1328A:p.L443X,Gabra5:NM_176942:exon10:c.T1328A:p.L443X,Gabra5:NM_001362162:exon11:c.T1328A:p.L443X"	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999492	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	187	163	6	0.036809816	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999809	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	59276594	12A2p6	cell line	sgMsh2	59276594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	173	161	32	0.198757764	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon4:c.A1119G:p.E373E,Ube3a:NM_011668:exon6:c.A1182G:p.E394E"	7qB5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	AAC	synonymous	NA	NA	NA	NA
M6	chr7	62379272	12A2p6	cell line	sgMsh2	62379272	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	20	0	0	NA	exonic	Magel2	nonsynonymous SNV	Magel2:NM_013779:exon1:c.G1923T:p.Q641H	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9613148	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	63727459	12A2p6	cell line	sgMsh2	63727459	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	116	0	0	NA	exonic	Otud7a	synonymous SNV	Otud7a:NM_130880:exon7:c.A598C:p.R200R	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.7516513	AAG	synonymous	NA	NA	NA	NA
M6	chr7	63757608	12A2p6	cell line	sgMsh2	63757608	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.163	99	0	0	NA	exonic	Otud7a	nonsynonymous SNV	Otud7a:NM_130880:exon14:c.A1658G:p.N553S	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9860287	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	63757613	12A2p6	cell line	sgMsh2	63757613	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	97	0	0	NA	exonic	Otud7a	frameshift deletion	Otud7a:NM_130880:exon14:c.1663delA:p.N556Tfs*65	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr7	65312728	12A2p6	cell line	sgMsh2	65312728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	137	329	67	0.203647416	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon20:c.G3460A:p.E1154K,Tjp1:NM_009386:exon21:c.G3700A:p.E1234K"	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9881442	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	66074375	12A2p6	cell line	sgMsh2	66074375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	180	123	25	0.203252033	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon9:c.T763C:p.S255P	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999999	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	66171343	12A2p6	cell line	sgMsh2	66171343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	143	70	14	0.2	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A1325G:p.Y442C	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	362	4	2	0.5	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	67041823	12A2p6	cell line	sgMsh2	67041823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	66	0	0	NA	exonic	Adamts17	nonsynonymous SNV	Adamts17:NM_001033877:exon13:c.T1754C:p.V585A	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.997124	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	67736755	12A2p6	cell line	sgMsh2	67736755	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	109	0	0	NA	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.A1158T:p.T386T,Synm:NM_207663:exon4:c.A1158T:p.T386T"	7qC	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	TTG	synonymous	NA	NA	NA	NA
M6	chr7	72245550	12A2p6	cell line	sgMsh2	72245550	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	102	0	0	NA	exonic	Mctp2	nonsynonymous SNV	Mctp2:NM_001024703:exon4:c.A548G:p.D183G	7qD1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999112	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	74346684	12A2p6	cell line	sgMsh2	74346684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	59	43	2	0.046511628	exonic	Slco3a1	nonsynonymous SNV	"Slco3a1:NM_001038643:exon4:c.C973T:p.P325S,Slco3a1:NM_023908:exon4:c.C973T:p.P325S"	7qD1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9933303	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	75609145	12A2p6	cell line	sgMsh2	75609145	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	112	86	16	0.186046512	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon7:c.A1516C:p.R506R	7qD1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999079	AAG	synonymous	NA	NA	NA	NA
M6	chr7	75666561	12A2p6	cell line	sgMsh2	75666561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	89	61	10	0.163934426	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon10:c.A4185G:p.K1395K	7qD1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	AAG	synonymous	NA	NA	NA	NA
M6	chr7	78843901	12A2p6	cell line	sgMsh2	78843901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	147	21	2	0.095238095	exonic	Det1	synonymous SNV	Det1:NM_029585:exon2:c.T354G:p.G118G	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	GAC	synonymous	NA	NA	NA	NA
M6	chr7	78919856	12A2p6	cell line	sgMsh2	78919856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	104	0	0	NA	exonic	Isg20	nonsynonymous SNV	Isg20:NM_001291220:exon4:c.C574T:p.P192S	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	140	65	22	0.338461538	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	CAG	synonymous	AGA	8	AGAAGAAG	NA
M6	chr7	79089869	12A2p6	cell line	sgMsh2	79089869	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	121	103	15	0.145631068	exonic	Acan	nonsynonymous SNV	"Acan:NM_001361500:exon6:c.T1024A:p.S342T,Acan:NM_007424:exon6:c.T1024A:p.S342T"	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	79695307	12A2p6	cell line	sgMsh2	79695307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	9	1	0.111111111	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.C4919T:p.T1640I	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9985248	ACC	nonsynonymous	C	5	CCCCC	NA
M6	chr7	80082188	12A2p6	cell line	sgMsh2	80082188	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	32	5	0.15625	exonic	Zfp710	nonsynonymous SNV	"Zfp710:NM_001145999:exon2:c.A1112T:p.H371L,Zfp710:NM_001146000:exon2:c.A1112T:p.H371L,Zfp710:NM_175433:exon2:c.A1112T:p.H371L"	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	34	52	13	0.25	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9843134	GCC	synonymous	NA	NA	NA	NA
M6	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Vardict	2	0.077	72	75	3	0.04	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	0.728083	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	80328797	12A2p6	cell line	sgMsh2	80328797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.177	50	61	9	0.147540984	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon14:c.T1902C:p.A634A	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9872415	GAG	synonymous	NA	NA	NA	NA
M6	chr7	80359748	12A2p6	cell line	sgMsh2	80359748	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	32	2	0.0625	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon17:c.G2357A:p.R786Q	7qD2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CCG	nonsynonymous	NA	NA	NA	NA
M6	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	106	636	30	0.047169811	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	80730246	12A2p6	cell line	sgMsh2	80730246	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	246	288	0	0	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon27:c.3466delA:p.I1156Sfs*11	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	49	26	7	0.269230769	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	CAT	synonymous	NA	NA	NA	NA
M6	chr7	81095526	12A2p6	cell line	sgMsh2	81095526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	166	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon8:c.G4021A:p.E1341K	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999974	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	133	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.34E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	81351885	12A2p6	cell line	sgMsh2	81351885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	130	1	1	1	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon7:c.A1030G:p.R344G,Cpeb1:NM_001252525:exon9:c.A1273G:p.R425G,Cpeb1:NM_001252526:exon9:c.A1255G:p.R419G,Cpeb1:NM_007755:exon9:c.A1270G:p.R424G"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9830331	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	82683023	12A2p6	cell line	sgMsh2	82683023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	269	90	19	0.211111111	exonic	Efl1	nonsynonymous SNV	"Efl1:NM_001159672:exon9:c.T874G:p.L292V,Efl1:NM_175317:exon9:c.T874G:p.L292V"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	1.02E-08	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	82867884	12A2p6	cell line	sgMsh2	82867884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	149	21	0	0	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon1:c.G234A:p.P78P	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	CGG	synonymous	NA	NA	NA	NA
M6	chr7	82869546	12A2p6	cell line	sgMsh2	82869546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	65	17	5	0.294117647	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon2:c.A1068G:p.V356V	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9979485	TAC	synonymous	NA	NA	NA	NA
M6	chr7	83618603	12A2p6	cell line	sgMsh2	83618603	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	78	0	0	NA	exonic	Tmc3	frameshift deletion	Tmc3:NM_177695:exon21:c.2274delA:p.K759Sfs*19	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr7	83618621	12A2p6	cell line	sgMsh2	83618621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	65	0	0	NA	exonic	Tmc3	synonymous SNV	Tmc3:NM_177695:exon21:c.A2292G:p.Q764Q	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	AAG	synonymous	NA	NA	NA	NA
M6	chr7	84343763	12A2p6	cell line	sgMsh2	84343763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	83	2	0	0	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon5:c.A601G:p.T201A	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993745	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	84856838	12A2p6	cell line	sgMsh2	84856838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	424	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T474C:p.S158S	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.9826352	CTT	synonymous	NA	NA	NA	NA
M6	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Vardict	2	0.029	194	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	85222219	12A2p6	cell line	sgMsh2	85222219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	280	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon6:c.A1855G:p.S619G	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.39E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	85222432	12A2p6	cell line	sgMsh2	85222432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	307	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon6:c.G1642A:p.D548N	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.23E-09	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	85406987	12A2p6	cell line	sgMsh2	85406987	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	473	0	0	NA	exonic	Vmn2r69	stopgain	Vmn2r69:NM_001105182:exon6:c.C1942T:p.Q648X	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	85561954	12A2p6	cell line	sgMsh2	85561954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	203	0	0	NA	exonic	Vmn2r70	synonymous SNV	Vmn2r70:NM_001384914:exon5:c.T1539C:p.P513P	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999992	AAG	synonymous	NA	NA	NA	NA
M6	chr7	85749164	12A2p6	cell line	sgMsh2	85749164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	195	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon5:c.T1592C:p.F531S	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	AAA	nonsynonymous	ACAA	9	ACAAACAAA	NA
M6	chr7	85871535	12A2p6	cell line	sgMsh2	85871535	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	382	0	0	NA	exonic	Vmn2r73	synonymous SNV	Vmn2r73:NM_001105186:exon3:c.G1224A:p.L408L	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	GCA	synonymous	GCA	9	GCAGCAGCA	NA
M6	chr7	85871998	12A2p6	cell line	sgMsh2	85871998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	145	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.A761G:p.N254S	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	371	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M6	chr7	86228859	12A2p6	cell line	sgMsh2	86228859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	59	0	0	NA	exonic	Vmn2r76	synonymous SNV	Vmn2r76:NM_001384930:exon4:c.T1320C:p.H440H	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	AAT	synonymous	NA	NA	NA	NA
M6	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	144	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999959	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	86269480	12A2p6	cell line	sgMsh2	86269480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	326	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.T308C:p.L103S	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.07E-09	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	86306382	12A2p6	cell line	sgMsh2	86306382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	163	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.A730G:p.M244V	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9999096	ATG	nonsynonymous	CAC	8	CACCACCA	NA
M6	chr7	86363962	12A2p6	cell line	sgMsh2	86363962	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	exonic	Olfr305	nonsynonymous SNV	Olfr305:NM_146616:exon1:c.G374A:p.C125Y	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	292	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1	CTG	synonymous	NA	NA	NA	NA
M6	chr7	86488673	12A2p6	cell line	sgMsh2	86488673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	245	0	0	NA	exonic	Olfr298	nonsynonymous SNV	Olfr298:NM_001011751:exon1:c.A877G:p.S293G	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	86695231	12A2p6	cell line	sgMsh2	86695231	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	199	0	0	NA	exonic	Olfr292	frameshift deletion	Olfr292:NM_146620:exon2:c.774delA:p.K259Nfs*7	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr7	86756970	12A2p6	cell line	sgMsh2	86756970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon7:c.T894C:p.P298P,Folh1:NM_016770:exon7:c.T894C:p.P298P"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	TAG	synonymous	NA	NA	NA	NA
M6	chr7	86773254	12A2p6	cell line	sgMsh2	86773254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	199	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon2:c.C174T:p.G58G,Folh1:NM_016770:exon2:c.C174T:p.G58G"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TGC	synonymous	NA	NA	NA	NA
M6	chr7	87602580	12A2p6	cell line	sgMsh2	87602580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	246	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon3:c.A37G:p.K13E,Grm5:NM_001143834:exon3:c.A37G:p.K13E"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.42E-08	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	87603038	12A2p6	cell line	sgMsh2	87603038	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	273	0	0	NA	exonic	Grm5	synonymous SNV	"Grm5:NM_001081414:exon3:c.C495T:p.N165N,Grm5:NM_001143834:exon3:c.C495T:p.N165N"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	2.03E-08	ACA	synonymous	NA	NA	NA	NA
M6	chr7	88130070	12A2p6	cell line	sgMsh2	88130070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	50	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon10:c.A2717G:p.K906R,Grm5:NM_001143834:exon11:c.A2813G:p.K938R"	7qD3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9944928	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	90427491	12A2p6	cell line	sgMsh2	90427491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	68	1	1	1	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.A908G:p.K303R	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9983167	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	90427503	12A2p6	cell line	sgMsh2	90427503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	73	2	1	0.5	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.T920A:p.L307Q	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	111	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	0.9999995	TAA	synonymous	A	5	AAAAA	NA
M6	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	113	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	0.9999998	ATT	nonsynonymous	A	5	AAAAA	NA
M6	chr7	92624080	12A2p6	cell line	sgMsh2	92624080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	76	10	2	0.2	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon4:c.T338C:p.I113T	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	96843077	12A2p6	cell line	sgMsh2	96843077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	162	5	1	0.2	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon20:c.A3220G:p.S1074G,Tenm4:NM_011858:exon20:c.A3109G:p.S1037G,Tenm4:NM_001310762:exon21:c.A3217G:p.S1073G"	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999966	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	97499576	12A2p6	cell line	sgMsh2	97499576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	244	116	27	0.232758621	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon6:c.T661C:p.L221L,Ints4:NM_027256:exon6:c.T688C:p.L230L"	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.60E-08	GTT	synonymous	NA	NA	NA	NA
M6	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Vardict	2	0.065	65	13	2	0.153846154	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9728383	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	98352168	12A2p6	cell line	sgMsh2	98352168	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	52	8	1	0.125	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.C955T:p.R319C,Tsku:NM_001168539:exon2:c.C955T:p.R319C,Tsku:NM_001168540:exon3:c.C955T:p.R319C,Tsku:NM_001168541:exon4:c.C955T:p.R319C"	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	98477241	12A2p6	cell line	sgMsh2	98477241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	109	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon19:c.C3303A:p.R1101R	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	GCC	synonymous	NA	NA	NA	NA
M6	chr7	98703399	12A2p6	cell line	sgMsh2	98703399	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	26	15	5	0.333333333	exonic	Thap12	nonsynonymous SNV	Thap12:NM_028410:exon1:c.T10C:p.F4L	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9736728	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	99438340	12A2p6	cell line	sgMsh2	99438340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	49	8	1	0.125	exonic	Gdpd5	synonymous SNV	"Gdpd5:NM_001362167:exon5:c.T210C:p.D70D,Gdpd5:NM_201352:exon5:c.T210C:p.D70D,Gdpd5:NM_001362166:exon6:c.T210C:p.D70D"	7qE1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9941189	ATG	synonymous	NA	NA	NA	NA
M6	chr7	100029349	12A2p6	cell line	sgMsh2	100029349	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	0	0	NA	exonic	Chrdl2	nonsynonymous SNV	"Chrdl2:NM_001291320:exon9:c.A1127C:p.K376T,Chrdl2:NM_133709:exon9:c.A1106C:p.K369T"	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9979485	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	100344993	12A2p6	cell line	sgMsh2	100344993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	99	86	17	0.197674419	exonic	Ppme1	nonsynonymous SNV	Ppme1:NM_028292:exon6:c.T512C:p.V171A	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	100881196	12A2p6	cell line	sgMsh2	100881196	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.123	50	45	4	0.088888889	exonic	Arhgef17	nonsynonymous SNV	Arhgef17:NM_001081116:exon11:c.A4382C:p.E1461A	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.000677325	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	100938968	12A2p6	cell line	sgMsh2	100938968	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	85	0	0	NA	exonic	P2ry6	synonymous SNV	P2ry6:NM_183168:exon3:c.C183T:p.S61S	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9951355	CGG	synonymous	NA	NA	NA	NA
M6	chr7	101999278	12A2p6	cell line	sgMsh2	101999278	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	42	228	46	0.201754386	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon14:c.A2215C:p.S739R	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9782118	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	102011047	12A2p6	cell line	sgMsh2	102011047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	123	168	3	0.017857143	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon19:c.A5377G:p.T1793A	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999481	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	102012774	12A2p6	cell line	sgMsh2	102012774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	65	106	21	0.198113208	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon21:c.G5671A:p.D1891N	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9979485	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr7	102240087	12A2p6	cell line	sgMsh2	102240087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	98	153	31	0.202614379	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.T158A:p.L53Q	7qE2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	139	160	7	0.04375	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999998	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	119	201	6	0.029850746	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999686	GTT	synonymous	NA	NA	NA	NA
M6	chr7	102605185	12A2p6	cell line	sgMsh2	102605185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	165	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T830C:p.L277P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999972	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	146	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	2.37E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	102640431	12A2p6	cell line	sgMsh2	102640431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	123	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.T184C:p.Y62H	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	102774994	12A2p6	cell line	sgMsh2	102774994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	187	0	0	NA	exonic	Olfr561	nonsynonymous SNV	Olfr561:NM_147092:exon1:c.G469A:p.A157T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	CGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	102804243	12A2p6	cell line	sgMsh2	102804243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	327	0	0	NA	exonic	Olfr564	nonsynonymous SNV	Olfr564:NM_146359:exon1:c.T764C:p.I255T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.06E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	103219940	12A2p6	cell line	sgMsh2	103219940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	190	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G221A:p.G74D	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999983	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103328734	12A2p6	cell line	sgMsh2	103328734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	486	0	0	NA	exonic	Olfr598	nonsynonymous SNV	Olfr598:NM_001011793:exon1:c.A247G:p.I83V	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	4.23E-08	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	103338948	12A2p6	cell line	sgMsh2	103338948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	124	0	0	NA	exonic	Olfr599	nonsynonymous SNV	Olfr599:NM_146731:exon1:c.A893G:p.K298R	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999583	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Vardict	2	0.03	472	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103442844	12A2p6	cell line	sgMsh2	103442844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	361	0	0	NA	exonic	Olfr605	nonsynonymous SNV	Olfr605:NM_001011854:exon1:c.A278G:p.D93G	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.01E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103451350	12A2p6	cell line	sgMsh2	103451350	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	183	0	0	NA	exonic	Olfr606	synonymous SNV	Olfr606:NM_147094:exon1:c.A12T:p.S4S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9990152	CAA	synonymous	NA	NA	NA	NA
M6	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Vardict	2	0.032	161	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.171672362	3	1.01E-09	ATG	synonymous	NA	NA	NA	NA
M6	chr7	103506837	12A2p6	cell line	sgMsh2	103506837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	75	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T108C:p.I36I	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	AAA	synonymous	NA	NA	NA	NA
M6	chr7	103597381	12A2p6	cell line	sgMsh2	103597381	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	192	0	0	NA	exonic	Olfr618	stopgain	Olfr618:NM_147047:exon1:c.G64T:p.G22X	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	103597434	12A2p6	cell line	sgMsh2	103597434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	241	0	0	NA	exonic	Olfr618	nonsynonymous SNV	Olfr618:NM_147047:exon1:c.A117G:p.I39M	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.93E-08	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	103611559	12A2p6	cell line	sgMsh2	103611559	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	280	0	0	NA	exonic	Olfr620	nonsynonymous SNV	Olfr620:NM_146812:exon1:c.C793T:p.R265C	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	2.71E-09	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	103841781	12A2p6	cell line	sgMsh2	103841781	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	172	0	0	NA	exonic	Hbb-bh1	nonsynonymous SNV	Hbb-bh1:NM_008219:exon3:c.G415A:p.A139T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103892925	12A2p6	cell line	sgMsh2	103892925	A	G	SNV	Mutect2;Vardict	2	0.117	227	0	0	NA	exonic	Olfr64	nonsynonymous SNV	Olfr64:NM_013617:exon1:c.T809C:p.V270A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.99999	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103906510	12A2p6	cell line	sgMsh2	103906510	G	T	SNV	Mutect2;Vardict	2	0.029	262	0	0	NA	exonic	Olfr65	nonsynonymous SNV	Olfr65:NM_013616:exon1:c.G70T:p.A24S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	103947175	12A2p6	cell line	sgMsh2	103947175	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	239	0	0	NA	exonic	Olfr633	nonsynonymous SNV	Olfr633:NM_146354:exon1:c.T608C:p.V203A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	104003606	12A2p6	cell line	sgMsh2	104003606	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	245	0	0	NA	exonic	Olfr638	synonymous SNV	Olfr638:NM_147120:exon1:c.A348G:p.S116S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	CAT	synonymous	TCAT	8	TCATTCAT	NA
M6	chr7	104069002	12A2p6	cell line	sgMsh2	104069002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	106	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.G28T:p.G10W	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998631	CCA	nonsynonymous	NA	NA	NA	NA
M6	chr7	104106545	12A2p6	cell line	sgMsh2	104106545	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	170	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.A265T:p.I89F	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999998	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104107148	12A2p6	cell line	sgMsh2	104107148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	151	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.T868C:p.Y290H	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999993	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	104128695	12A2p6	cell line	sgMsh2	104128695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	128	0	0	NA	exonic	Ubqln5	synonymous SNV	Ubqln5:NM_027634:exon1:c.T921C:p.P307P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999649	CAG	synonymous	NA	NA	NA	NA
M6	chr7	104129212	12A2p6	cell line	sgMsh2	104129212	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	68	0	0	NA	exonic	Ubqln5	nonsynonymous SNV	Ubqln5:NM_027634:exon1:c.A404C:p.D135A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9983167	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	104141090	12A2p6	cell line	sgMsh2	104141090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	82	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.T1861C:p.F621L,Ubqln3:NM_198623:exon2:c.T1792C:p.F598L"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9935257	AAG	nonsynonymous	G	5	GGGGG	NA
M6	chr7	104265854	12A2p6	cell line	sgMsh2	104265854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	208	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon8:c.A1007G:p.N336S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104336164	12A2p6	cell line	sgMsh2	104336164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	395	1	0	0	exonic	Trim34b	synonymous SNV	Trim34b:NM_001243916:exon7:c.T1005C:p.N335N	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.7948591	ATG	synonymous	NA	NA	NA	NA
M6	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Vardict	2	0.054	404	14	0	0	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6	chr7	104473250	12A2p6	cell line	sgMsh2	104473250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon5:c.T353C:p.I118T,Trim30d:NM_199146:exon6:c.T803C:p.I268T"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104553663	12A2p6	cell line	sgMsh2	104553663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	203	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.T743C:p.I248T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104588061	12A2p6	cell line	sgMsh2	104588061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	183	0	0	NA	exonic	Olfr654	nonsynonymous SNV	Olfr654:NM_146379:exon1:c.T307G:p.F103V	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104596668	12A2p6	cell line	sgMsh2	104596668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	175	0	0	NA	exonic	Olfr655	nonsynonymous SNV	Olfr655:NM_146820:exon1:c.G512T:p.R171M	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	104635816	12A2p6	cell line	sgMsh2	104635816	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	281	0	0	NA	exonic	Olfr657	frameshift deletion	Olfr657:NM_146312:exon1:c.141delA:p.N48Tfs*13	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	256	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	TCC	synonymous	NA	NA	NA	NA
M6	chr7	104636454	12A2p6	cell line	sgMsh2	104636454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	331	0	0	NA	exonic	Olfr657	nonsynonymous SNV	Olfr657:NM_146312:exon1:c.T779C:p.V260A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.05E-09	GTT	nonsynonymous	TGT	9	TGTTGTTGT	NA
M6	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	463	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	104860793	12A2p6	cell line	sgMsh2	104860793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	495	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon3:c.T604C:p.S202P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTC	nonsynonymous	TCAGC	14	TCAGCTCAGCTCAG	NA
M6	chr7	104939177	12A2p6	cell line	sgMsh2	104939177	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	253	0	0	NA	exonic	Olfr669	nonsynonymous SNV	Olfr669:NM_147043:exon1:c.C650T:p.S217F	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.30E-09	TCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	105086511	12A2p6	cell line	sgMsh2	105086511	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	339	0	0	NA	exonic	Olfr679	nonsynonymous SNV	Olfr679:NM_147044:exon1:c.C794T:p.T265I	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.03E-09	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr7	105329402	12A2p6	cell line	sgMsh2	105329402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	139	0	0	NA	exonic	Olfr690	synonymous SNV	Olfr690:NM_020290:exon1:c.T789C:p.T263T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999717	GAG	synonymous	NA	NA	NA	NA
M6	chr7	105337497	12A2p6	cell line	sgMsh2	105337497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	136	0	0	NA	exonic	Olfr691	nonsynonymous SNV	Olfr691:NM_147061:exon1:c.T218C:p.I73T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999811	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	101	54	2	0.037037037	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9784345	GAT	synonymous	NA	NA	NA	NA
M6	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	101	55	2	0.036363636	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6	chr7	105720931	12A2p6	cell line	sgMsh2	105720931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	92	0	0	NA	exonic	Dnhd1	nonsynonymous SNV	Dnhd1:NM_001370803:exon43:c.T13559C:p.V4520A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9994859	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	105721722	12A2p6	cell line	sgMsh2	105721722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	102	0	0	NA	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon44:c.A14205G:p.T4735T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	CAT	synonymous	NA	NA	NA	NA
M6	chr7	105734947	12A2p6	cell line	sgMsh2	105734947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	119	25	7	0.28	exonic	Rrp8	nonsynonymous SNV	"Rrp8:NM_025897:exon2:c.T209C:p.V70A,Rrp8:NM_133951:exon2:c.T347C:p.V116A"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	TAC	nonsynonymous	CCT	16	CCTCCTCCTCCTCCTC	NA
M6	chr7	106601234	12A2p6	cell line	sgMsh2	106601234	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	167	0	0	NA	exonic	Gm1966	frameshift deletion	"Gm1966:NM_001277179:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277180:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277181:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277182:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277183:exon6:c.2802delA:p.K934Nfs*4"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6	chr7	106603495	12A2p6	cell line	sgMsh2	106603495	G	T	SNV	Mutect2;Vardict	2	0.029	264	0	0	NA	exonic	Gm1966	nonsynonymous SNV	"Gm1966:NM_001277179:exon3:c.C541A:p.L181M,Gm1966:NM_001277180:exon3:c.C541A:p.L181M,Gm1966:NM_001277181:exon4:c.C541A:p.L181M,Gm1966:NM_001277182:exon4:c.C541A:p.L181M,Gm1966:NM_001277183:exon6:c.C541A:p.L181M"	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	106677976	12A2p6	cell line	sgMsh2	106677976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	276	0	0	NA	exonic	Olfr693	nonsynonymous SNV	Olfr693:NM_146453:exon1:c.A509G:p.K170R	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.82E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	106790217	12A2p6	cell line	sgMsh2	106790217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	198	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.A783G:p.L261L	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GTA	synonymous	NA	NA	NA	NA
M6	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	287	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	CCT	synonymous	NA	NA	NA	NA
M6	chr7	106886682	12A2p6	cell line	sgMsh2	106886682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	253	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.T134C:p.L45P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	9.30E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	265	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	107823332	12A2p6	cell line	sgMsh2	107823332	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	499	0	0	NA	exonic	Olfr469	nonsynonymous SNV	Olfr469:NM_146426:exon1:c.C136A:p.L46I	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	107845023	12A2p6	cell line	sgMsh2	107845023	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	535	0	0	NA	exonic	Olfr470	synonymous SNV	Olfr470:NM_146425:exon1:c.C709A:p.R237R	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1	CGG	synonymous	NA	NA	NA	NA
M6	chr7	107902860	12A2p6	cell line	sgMsh2	107902860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	371	0	0	NA	exonic	Olfr472	nonsynonymous SNV	Olfr472:NM_146774:exon1:c.T142G:p.L48V	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	402	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M6	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	330	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	AAA	synonymous	AATG	8	AATGAATG	NA
M6	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Vardict	2	0.03	253	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	ATG	nonsynonymous	G	5	GGGGG	NA
M6	chr7	108094849	12A2p6	cell line	sgMsh2	108094849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	380	0	0	NA	exonic	Olfr482	synonymous SNV	Olfr482:NM_146733:exon1:c.C720T:p.A240A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M6	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	185	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.16E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	108159177	12A2p6	cell line	sgMsh2	108159177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	280	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T695C:p.L232P	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	3.83E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	277	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.155578078	3	1	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	108286369	12A2p6	cell line	sgMsh2	108286369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	256	0	0	NA	exonic	Olfr490	synonymous SNV	Olfr490:NM_146498:exon1:c.T756C:p.T252T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	7.81E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	388	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	108317735	12A2p6	cell line	sgMsh2	108317735	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	300	0	0	NA	exonic	Olfr491	synonymous SNV	Olfr491:NM_146736:exon1:c.G840T:p.V280V	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	1.73E-09	TGG	synonymous	NA	NA	NA	NA
M6	chr7	108323552	12A2p6	cell line	sgMsh2	108323552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	417	0	0	NA	exonic	Olfr492	synonymous SNV	Olfr492:NM_146497:exon1:c.T123C:p.T41T	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr7	108465962	12A2p6	cell line	sgMsh2	108465962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	301	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A637G:p.T213A	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.35E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	108466294	12A2p6	cell line	sgMsh2	108466294	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	298	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.C969A:p.H323Q	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.42E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr7	108523091	12A2p6	cell line	sgMsh2	108523091	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	349	0	0	NA	exonic	Olfr502	frameshift deletion	Olfr502:NM_146739:exon1:c.858delC:p.M287Cfs*1	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M6	chr7	108565457	12A2p6	cell line	sgMsh2	108565457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	234	0	0	NA	exonic	Olfr504	nonsynonymous SNV	Olfr504:NM_001011858:exon1:c.T337C:p.F113L	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.01E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	108755711	12A2p6	cell line	sgMsh2	108755711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	150	0	0	NA	exonic	Olfr513	nonsynonymous SNV	Olfr513:NM_146723:exon1:c.A854G:p.N285S	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999994	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	108881560	12A2p6	cell line	sgMsh2	108881560	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	101	0	0	NA	exonic	Olfr518	synonymous SNV	Olfr518:NM_146306:exon1:c.C45A:p.G15G	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9995754	AGC	synonymous	NA	NA	NA	NA
M6	chr7	110489358	12A2p6	cell line	sgMsh2	110489358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	71	29	2	0.068965517	exonic	Sbf2	nonsynonymous SNV	Sbf2:NM_177324:exon3:c.T145C:p.F49L	7qE3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	111554553	12A2p6	cell line	sgMsh2	111554553	A	G	SNV	Mutect2;Vardict	2	0.048	86	2	0	0	exonic	Galnt18	nonsynonymous SNV	"Galnt18:NM_001360903:exon5:c.T863C:p.F288S,Galnt18:NM_173739:exon5:c.T863C:p.F288S"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.999919	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Vardict	2	0.035	124	14	0	0	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	8.64E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	112876204	12A2p6	cell line	sgMsh2	112876204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	163	76	13	0.171052632	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon9:c.T829C:p.F277L,Tead1:NM_009346:exon10:c.T841C:p.F281L,Tead1:NM_001166584:exon11:c.T904C:p.F302L"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9999721	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	112894450	12A2p6	cell line	sgMsh2	112894450	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	92	63	6	0.095238095	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.T1153A:p.F385I,Tead1:NM_009346:exon12:c.T1165A:p.F389I,Tead1:NM_001166584:exon13:c.T1228A:p.F410I"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	246	896	12	0.013392857	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	176	222	6	0.027027027	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9872918	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	114526788	12A2p6	cell line	sgMsh2	114526788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	176	19	1	0.052631579	exonic	Pde3b	synonymous SNV	Pde3b:NM_011055:exon12:c.T2256C:p.D752D	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999987	ATG	synonymous	NA	NA	NA	NA
M6	chr7	116351909	12A2p6	cell line	sgMsh2	116351909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	123	146	19	0.130136986	exonic	Pik3c2a	nonsynonymous SNV	Pik3c2a:NM_011083:exon24:c.G3740A:p.G1247D	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr7	117634620	12A2p6	cell line	sgMsh2	117634620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	68	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon7:c.T1373C:p.L458P	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9983167	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	118433917	12A2p6	cell line	sgMsh2	118433917	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	49	32	4	0.125	exonic	Syt17	synonymous SNV	"Syt17:NM_001362179:exon5:c.G684C:p.V228V,Syt17:NM_001362180:exon5:c.G684C:p.V228V,Syt17:NM_138649:exon5:c.G855C:p.V285V"	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	TCA	synonymous	NA	NA	NA	NA
M6	chr7	118490439	12A2p6	cell line	sgMsh2	118490439	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	52	106	17	0.160377358	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.G896T:p.G299V	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9951712	GCC	nonsynonymous	GCA	8	GCAGCAGC	NA
M6	chr7	118552817	12A2p6	cell line	sgMsh2	118552817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	89	9	2	0.222222222	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon7:c.A880G:p.I294V	7qF1	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	118722185	12A2p6	cell line	sgMsh2	118722185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	133	10	1	0.1	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon5:c.T1062C:p.S354S,Ccp110:NM_001360794:exon5:c.T1062C:p.S354S,Ccp110:NM_182995:exon5:c.T1062C:p.S354S"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	GTC	synonymous	NA	NA	NA	NA
M6	chr7	118724564	12A2p6	cell line	sgMsh2	118724564	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	114	12	1	0.083333333	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon6:c.G2022A:p.R674R,Ccp110:NM_001360794:exon6:c.G2025A:p.R675R,Ccp110:NM_182995:exon6:c.G2025A:p.R675R"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	GGG	synonymous	GGAGCA	23	GAGCAGGAGAGGGAGCAGGAGCA	NA
M6	chr7	118760190	12A2p6	cell line	sgMsh2	118760190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	242	134	26	0.194029851	exonic	Vps35l	synonymous SNV	Vps35l:NM_027815:exon8:c.T753C:p.V251V	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.82E-08	TTA	synonymous	NA	NA	NA	NA
M6	chr7	119452931	12A2p6	cell line	sgMsh2	119452931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	113	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon4:c.T550C:p.C184R	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9932964	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	119454281	12A2p6	cell line	sgMsh2	119454281	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	112	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon3:c.G447T:p.K149N	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999079	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr7	119498011	12A2p6	cell line	sgMsh2	119498011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	131	0	0	NA	exonic	Pdilt	nonsynonymous SNV	Pdilt:NM_027943:exon7:c.T856C:p.Y286H	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999737	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	119717011	12A2p6	cell line	sgMsh2	119717011	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	166	116	20	0.172413793	exonic	Thumpd1	synonymous SNV	Thumpd1:NM_145585:exon5:c.G714A:p.T238T	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999974	CCG	synonymous	NA	NA	NA	NA
M6	chr7	119785795	12A2p6	cell line	sgMsh2	119785795	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	206	37	6	0.162162162	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon9:c.C798A:p.A266A,Eri2:NM_027698:exon9:c.C1482A:p.A494A"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	AGG	synonymous	NA	NA	NA	NA
M6	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	215	21	1	0.047619048	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
M6	chr7	119801262	12A2p6	cell line	sgMsh2	119801262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	96	9	0	0	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A269G:p.N90S,Rexo5:NM_001370778:exon4:c.A269G:p.N90S"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9968041	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	119801285	12A2p6	cell line	sgMsh2	119801285	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	109	9	0	0	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A292C:p.K98Q,Rexo5:NM_001370778:exon4:c.A292C:p.K98Q"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.938833232	1	0.9989454	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	119928814	12A2p6	cell line	sgMsh2	119928814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	123	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon58:c.T11411C:p.L3804P	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999053	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	120021009	12A2p6	cell line	sgMsh2	120021009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	175	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon33:c.T4663C:p.Y1555H	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999978	TAG	nonsynonymous	CATAGT	12	CATAGTCATAGT	NA
M6	chr7	120139766	12A2p6	cell line	sgMsh2	120139766	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	133	0	0	NA	exonic	Zp2	nonsynonymous SNV	"Zp2:NM_001374631:exon7:c.A597C:p.Q199H,Zp2:NM_011775:exon7:c.A597C:p.Q199H"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	120339991	12A2p6	cell line	sgMsh2	120339991	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	84	0	0	NA	exonic	Abca15	nonsynonymous SNV	Abca15:NM_177213:exon6:c.T607C:p.Y203H	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9842887	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	120403069	12A2p6	cell line	sgMsh2	120403069	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	164	0	0	NA	exonic	Abca15	nonsynonymous SNV	Abca15:NM_177213:exon29:c.A4804G:p.T1602A	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	121648566	12A2p6	cell line	sgMsh2	121648566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	90	20	6	0.3	exonic	Usp31	nonsynonymous SNV	Usp31:NM_001033173:exon16:c.A3653G:p.K1218R	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	122171703	12A2p6	cell line	sgMsh2	122171703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	107	1	0	0	exonic	Ern2	synonymous SNV	"Ern2:NM_001316689:exon18:c.A2166G:p.S722S,Ern2:NM_012016:exon18:c.A2169G:p.S723S"	7qF2	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9934803	CTG	synonymous	NA	NA	NA	NA
M6	chr7	123175446	12A2p6	cell line	sgMsh2	123175446	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	124	76	10	0.131578947	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon9:c.G3504A:p.R1168R	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.842267528	1	0.9710355	GGA	synonymous	NA	NA	NA	NA
M6	chr7	123176843	12A2p6	cell line	sgMsh2	123176843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	161	113	17	0.150442478	exonic	Tnrc6a	nonsynonymous SNV	Tnrc6a:NM_144925:exon10:c.A3536G:p.N1179S	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999964	AAC	nonsynonymous	AAAC	10	AAACAAACAA	NA
M6	chr7	124397094	12A2p6	cell line	sgMsh2	124397094	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	184	0	0	NA	exonic	Hs3st4	nonsynonymous SNV	Hs3st4:NM_001252072:exon2:c.A982G:p.I328V	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9999775	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	125663465	12A2p6	cell line	sgMsh2	125663465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	98	93	19	0.204301075	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon20:c.A3221G:p.E1074G	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9995764	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr7	125669638	12A2p6	cell line	sgMsh2	125669638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	219	182	33	0.181318681	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon14:c.A2295G:p.K765K	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TTT	synonymous	T	5	TTTTT	NA
M6	chr7	125677390	12A2p6	cell line	sgMsh2	125677390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	26	66	18	0.272727273	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon9:c.A1478G:p.K493R	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9736728	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	126367949	12A2p6	cell line	sgMsh2	126367949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	134	3	1	0.333333333	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon8:c.T432G:p.S144R	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	126572480	12A2p6	cell line	sgMsh2	126572480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	120	67	17	0.253731343	exonic	Cln3	synonymous SNV	"Cln3:NM_001329789:exon13:c.T1116C:p.I372I,Cln3:NM_009907:exon14:c.T1188C:p.I396I,Cln3:NM_001146311:exon17:c.T1188C:p.I396I"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	CAA	synonymous	NA	NA	NA	NA
M6	chr7	126781902	12A2p6	cell line	sgMsh2	126781902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	57	0	0	NA	exonic	Tbx6	nonsynonymous SNV	Tbx6:NM_011538:exon2:c.A308G:p.E103G	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	GAA	nonsynonymous	GGAA	8	GGAAGGAA	NA
M6	chr7	126785135	12A2p6	cell line	sgMsh2	126785135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	84	1	0	0	exonic	Tbx6	synonymous SNV	Tbx6:NM_011538:exon8:c.T1278C:p.G426G	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9266013	GTT	synonymous	NA	NA	NA	NA
M6	chr7	126786500	12A2p6	cell line	sgMsh2	126786500	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	88	324	55	0.169753086	exonic	Ppp4c	synonymous SNV	"Ppp4c:NM_001360464:exon7:c.C666T:p.V222V,Ppp4c:NM_019674:exon8:c.C666T:p.V222V"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	CGA	synonymous	NA	NA	NA	NA
M6	chr7	126824204	12A2p6	cell line	sgMsh2	126824204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	50	0	0	NA	exonic	Tlcd3b	synonymous SNV	Tlcd3b:NM_029978:exon1:c.C117T:p.V39V	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.956343	TCT	synonymous	NA	NA	NA	NA
M6	chr7	127236362	12A2p6	cell line	sgMsh2	127236362	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	86	19	0.220930233	exonic	Zfp553	nonsynonymous SNV	"Zfp553:NM_001360912:exon2:c.A1088G:p.Y363C,Zfp553:NM_146201:exon2:c.A1088G:p.Y363C"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9987071	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	59	5	0	0	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.942827	GTT	synonymous	NA	NA	NA	NA
M6	chr7	127879144	12A2p6	cell line	sgMsh2	127879144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	104	37	10	0.27027027	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A492G:p.Q164Q	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998437	AAG	synonymous	NA	NA	NA	NA
M6	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	55	26	0	0	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.8238673	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr7	127889628	12A2p6	cell line	sgMsh2	127889628	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	146	0	0	NA	exonic	Prss53	synonymous SNV	Prss53:NM_001081268:exon3:c.T93A:p.R31R	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999903	CAC	synonymous	AGGGCC	13	AGGGCCAGGGCCA	NA
M6	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	204	241	7	0.029045643	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.177037124	3	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr7	128114736	12A2p6	cell line	sgMsh2	128114736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	226	0	0	NA	exonic	Itgam	synonymous SNV	"Itgam:NM_001082960:exon23:c.T2715C:p.S905S,Itgam:NM_008401:exon23:c.T2712C:p.S904S"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.04E-08	GTG	synonymous	NA	NA	NA	NA
M6	chr7	128136127	12A2p6	cell line	sgMsh2	128136127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	106	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon13:c.T1453C:p.Y485H	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998631	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	128545788	12A2p6	cell line	sgMsh2	128545788	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	76	114	13	0.114035088	exonic	Bag3	nonsynonymous SNV	Bag3:NM_013863:exon4:c.A1126G:p.I376V	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.778393	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	129631238	12A2p6	cell line	sgMsh2	129631238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	213	57	14	0.245614035	exonic	Wdr11	nonsynonymous SNV	Wdr11:NM_172255:exon24:c.A2993G:p.K998R	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr7	131058208	12A2p6	cell line	sgMsh2	131058208	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	328	32	9	0.28125	exonic	Dmbt1	synonymous SNV	"Dmbt1:NM_007769:exon12:c.T1155G:p.S385S,Dmbt1:NM_001347632:exon13:c.T1188G:p.S396S"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	1.13E-09	CTA	synonymous	NA	NA	NA	NA
M6	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.028	232	68	0	0	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr7	131318094	12A2p6	cell line	sgMsh2	131318094	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	96	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon3:c.A292G:p.T98A	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9789362	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	133667558	12A2p6	cell line	sgMsh2	133667558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	101	33	6	0.181818182	exonic	Edrf1	nonsynonymous SNV	Edrf1:NM_178115:exon24:c.A3415G:p.T1139A	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	133721362	12A2p6	cell line	sgMsh2	133721362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	97	226	46	0.203539823	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon11:c.A1702G:p.N568D,Dhx32:NM_001286030:exon12:c.A2122G:p.N708D,Dhx32:NM_001286031:exon12:c.A2122G:p.N708D,Dhx32:NM_001357685:exon12:c.A2077G:p.N693D,Dhx32:NM_133941:exon12:c.A2122G:p.N708D"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9853553	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	133748902	12A2p6	cell line	sgMsh2	133748902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	177	185	35	0.189189189	exonic	Dhx32	synonymous SNV	"Dhx32:NM_001286032:exon2:c.G18A:p.G6G,Dhx32:NM_001286030:exon3:c.G438A:p.G146G,Dhx32:NM_001286031:exon3:c.G438A:p.G146G,Dhx32:NM_001357685:exon3:c.G393A:p.G131G,Dhx32:NM_133941:exon3:c.G438A:p.G146G"	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999987	GCC	synonymous	NA	NA	NA	NA
M6	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	120	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999806	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M6	chr7	135698125	12A2p6	cell line	sgMsh2	135698125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	309	73	17	0.232876712	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A5179G:p.I1727V	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.21E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr7	135699991	12A2p6	cell line	sgMsh2	135699991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	205	72	11	0.152777778	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A3313G:p.N1105D	7qF3	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr7	139511443	12A2p6	cell line	sgMsh2	139511443	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	148	57	1	0.01754386	exonic	Inpp5a	frameshift deletion	"Inpp5a:NM_001127363:exon5:c.342delA:p.N116Tfs*65,Inpp5a:NM_001355162:exon5:c.366delA:p.N124Tfs*65,Inpp5a:NM_183144:exon5:c.342delA:p.N116Tfs*65"	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr7	139654645	12A2p6	cell line	sgMsh2	139654645	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.19	92	0	0	NA	exonic	Cfap46	nonsynonymous SNV	Cfap46:NM_001302546:exon17:c.A2038T:p.I680F	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996547	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	139976647	12A2p6	cell line	sgMsh2	139976647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	81	1	0	0	exonic	Spef1l	synonymous SNV	"Spef1l:NM_001033465:exon4:c.T426C:p.A142A,Spef1l:NM_001347613:exon4:c.T426C:p.A142A,Spef1l:NM_001347614:exon4:c.T426C:p.A142A,Spef1l:NM_001359836:exon4:c.T426C:p.A142A"	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9981841	CAG	synonymous	NA	NA	NA	NA
M6	chr7	140126761	12A2p6	cell line	sgMsh2	140126761	T	G	SNV	Mutect2;Vardict	2	0.068	79	2	0	0	exonic	Paox	nonsynonymous SNV	Paox:NM_153783:exon2:c.T593G:p.L198R	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.36480377	3	0.967769	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	212	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	140220515	12A2p6	cell line	sgMsh2	140220515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	125	0	0	NA	exonic	Cd163l1	nonsynonymous SNV	Cd163l1:NM_172909:exon2:c.T208G:p.C70G	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9980336	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	140248153	12A2p6	cell line	sgMsh2	140248153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	158	0	0	NA	exonic	5830411N06Rik	synonymous SNV	"5830411N06Rik:NM_001128145:exon2:c.T273C:p.P91P,5830411N06Rik:NM_001128146:exon2:c.T273C:p.P91P,5830411N06Rik:NM_175533:exon2:c.T273C:p.P91P"	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999956	CTT	synonymous	NA	NA	NA	NA
M6	chr7	140372788	12A2p6	cell line	sgMsh2	140372788	G	T	SNV	Mutect2;Vardict	2	0.022	310	0	0	NA	exonic	Olfr530	nonsynonymous SNV	Olfr530:NM_146519:exon1:c.C821A:p.A274D	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.118024749	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr7	140400943	12A2p6	cell line	sgMsh2	140400943	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	286	0	0	NA	exonic	Olfr531	synonymous SNV	Olfr531:NM_146953:exon1:c.T102A:p.A34A	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.94E-09	CAG	synonymous	NA	NA	NA	NA
M6	chr7	140861417	12A2p6	cell line	sgMsh2	140861417	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	110	138	23	0.166666667	exonic	Ric8a	nonsynonymous SNV	Ric8a:NM_053194:exon8:c.G1329T:p.E443D	7qF4	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9581597	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr7	141068731	12A2p6	cell line	sgMsh2	141068731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	83	3	0	0	exonic	B4galnt4	nonsynonymous SNV	B4galnt4:NM_177897:exon14:c.A2159G:p.Y720C	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	2	0.7961624	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	141091981	12A2p6	cell line	sgMsh2	141091981	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	57	12	2	0.166666667	exonic	Sigirr	synonymous SNV	"Sigirr:NM_001355055:exon9:c.T888G:p.S296S,Sigirr:NM_023059:exon9:c.T888G:p.S296S"	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9965248	CAG	synonymous	NA	NA	NA	NA
M6	chr7	141211179	12A2p6	cell line	sgMsh2	141211179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	102	8	0	0	exonic	Lmntd2	nonsynonymous SNV	"Lmntd2:NM_001347565:exon9:c.A1319G:p.H440R,Lmntd2:NM_028050:exon9:c.A1289G:p.H430R,Lmntd2:NM_001382822:exon10:c.A1289G:p.H430R"	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9891448	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	141357561	12A2p6	cell line	sgMsh2	141357561	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	88	165	1	0.006060606	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon13:c.1087delA:p.S363Afs*3	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	CAG	frameshift	NA	NA	NA	-1
M6	chr7	141361607	12A2p6	cell line	sgMsh2	141361607	A	G	SNV	Mutect2;Vardict	2	0.053	89	165	1	0.006060606	exonic	Eps8l2	nonsynonymous SNV	Eps8l2:NM_133191:exon19:c.A1790G:p.N597S	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9997335	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	141401716	12A2p6	cell line	sgMsh2	141401716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	146	377	52	0.137931034	exonic	Taldo1	synonymous SNV	Taldo1:NM_011528:exon5:c.A597G:p.A199A	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9940337	CAA	synonymous	NA	NA	NA	NA
M6	chr7	141638741	12A2p6	cell line	sgMsh2	141638741	T	C	SNV	Mutect2;Vardict	2	0.022	1460	5	0	0	exonic	Muc6	synonymous SNV	Muc6:NM_001368953:exon31:c.A5703G:p.P1901P	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.118024749	3	1	GTG	synonymous	NA	NA	NA	NA
M6	chr7	141639538	12A2p6	cell line	sgMsh2	141639538	T	C	SNV	Mutect2;Vardict	2	0.03	1477	0	0	NA	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.A4906G:p.T1636A	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr7	141647548	12A2p6	cell line	sgMsh2	141647548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	exonic	Muc6	nonsynonymous SNV	"Muc6:NM_001330001:exon19:c.A2365G:p.T789A,Muc6:NM_001368953:exon19:c.A2365G:p.T789A"	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9998659	GTG	nonsynonymous	G	5	GGGGG	NA
M6	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	141	167	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999947	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	128	162	0	0	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999958	GTT	synonymous	NA	NA	NA	NA
M6	chr7	141804802	12A2p6	cell line	sgMsh2	141804802	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	194	45	0.231958763	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon28:c.A3735G:p.V1245V	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9989393	TAC	synonymous	NA	NA	NA	NA
M6	chr7	141865244	12A2p6	cell line	sgMsh2	141865244	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	87	25	0	0	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.A11926G:p.T3976A	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8723145	TAC	nonsynonymous	C	5	CCCCC	NA
M6	chr7	143764865	12A2p6	cell line	sgMsh2	143764865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	150	0	0	NA	exonic	Mrgprg	nonsynonymous SNV	Mrgprg:NM_203492:exon2:c.T509C:p.V170A	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999925	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr7	144595572	12A2p6	cell line	sgMsh2	144595572	T	C	SNV	Mutect2;Vardict	2	0.038	146	456	12	0.026315789	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon23:c.A2368G:p.M790V,Ano1:NM_178642:exon24:c.A2380G:p.M794V"	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	2.37E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	176	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-10158375-145323643	5	3	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999999	GTA	synonymous	NA	NA	NA	NA
M6	chr8	3189231	12A2p6	cell line	sgMsh2	3189231	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	107	91	15	0.164835165	exonic	Insr	nonsynonymous SNV	"Insr:NM_001330056:exon9:c.G1929C:p.K643N,Insr:NM_010568:exon9:c.G1929C:p.K643N"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr8	3604493	12A2p6	cell line	sgMsh2	3604493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	79	69	13	0.188405797	exonic	Camsap3	nonsynonymous SNV	"Camsap3:NM_001163749:exon11:c.T2084G:p.L695R,Camsap3:NM_027171:exon11:c.T2081G:p.L694R,Camsap3:NM_001347112:exon12:c.T2129G:p.L710R,Camsap3:NM_001347113:exon12:c.T2114G:p.L705R,Camsap3:NM_001363240:exon12:c.T2132G:p.L711R,Camsap3:NM_001363241:exon12:c.T2117G:p.L706R,Camsap3:NM_001347111:exon13:c.T2162G:p.L721R,Camsap3:NM_001363239:exon13:c.T2165G:p.L722R"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	358	56	1	0.017857143	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	4289852	12A2p6	cell line	sgMsh2	4289852	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	223	219	20	0.091324201	exonic	Elavl1	synonymous SNV	Elavl1:NM_010485:exon6:c.C729T:p.G243G	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.9191838	AGC	synonymous	NA	NA	NA	NA
M6	chr8	4749614	12A2p6	cell line	sgMsh2	4749614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	165	43	18	0.418604651	exonic	Shcbp1	synonymous SNV	Shcbp1:NM_011369:exon6:c.T861C:p.N287N	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999972	AAT	synonymous	NA	NA	NA	NA
M6	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.018	442	328	5	0.015243902	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.096565704	3	1	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M6	chr8	9971777	12A2p6	cell line	sgMsh2	9971777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	319	36	8	0.222222222	exonic	Lig4	nonsynonymous SNV	"Lig4:NM_001377042:exon2:c.A2002G:p.S668G,Lig4:NM_176953:exon2:c.A2002G:p.S668G"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	1.43E-08	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	11223048	12A2p6	cell line	sgMsh2	11223048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	98	254	44	0.173228346	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon28:c.T2046C:p.G682G	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.793984676	1	0.8295836	CAC	synonymous	NA	NA	NA	NA
M6	chr8	11244386	12A2p6	cell line	sgMsh2	11244386	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	84	222	34	0.153153153	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon10:c.A570T:p.P190P	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.724242779	2	0.5845936	CTG	synonymous	NA	NA	NA	NA
M6	chr8	11441269	12A2p6	cell line	sgMsh2	11441269	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	88	58	12	0.206896552	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon40:c.A3667T:p.R1223W	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9995504	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	11628529	12A2p6	cell line	sgMsh2	11628529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	87	28	7	0.25	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon3:c.A362G:p.D121G,Ankrd10:NM_133971:exon3:c.A362G:p.D121G"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	1	8.94E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	296	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr8	11824593	12A2p6	cell line	sgMsh2	11824593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	88	0	0	NA	exonic	Arhgef7	synonymous SNV	"Arhgef7:NM_001113518:exon18:c.T1752C:p.L584L,Arhgef7:NM_001372326:exon18:c.T1752C:p.L584L,Arhgef7:NM_001113517:exon19:c.T2223C:p.L741L,Arhgef7:NM_001372321:exon19:c.T2223C:p.L741L"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.531111371	2	0.9936591	TTT	synonymous	NA	NA	NA	NA
M6	chr8	11854270	12A2p6	cell line	sgMsh2	11854270	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	331	0	0	NA	exonic	Tex29	nonsynonymous SNV	Tex29:NM_029326:exon5:c.C355T:p.P119S	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9881717	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr8	12624927	12A2p6	cell line	sgMsh2	12624927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	134	43	7	0.162790698	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon19:c.A2192G:p.E731G	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999785	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	13094170	12A2p6	cell line	sgMsh2	13094170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	175	117	24	0.205128205	exonic	Pcid2	synonymous SNV	Pcid2:NM_178708:exon6:c.A336G:p.A112A	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.999347	GTG	synonymous	NA	NA	NA	NA
M6	chr8	13242349	12A2p6	cell line	sgMsh2	13242349	C	-	Deletion	Mutect2;Vardict	2	0.059	107	0	0	NA	exonic	Adprhl1	frameshift deletion	Adprhl1:NM_172750:exon6:c.807delG:p.R270Gfs*7	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.316520918	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6	chr8	13308355	12A2p6	cell line	sgMsh2	13308355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	71	132	16	0.121212121	exonic	Tmco3	nonsynonymous SNV	"Tmco3:NM_001364217:exon8:c.T1232C:p.I411T,Tmco3:NM_172282:exon8:c.T1235C:p.I412T"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	1	7.06E-07	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr8	13405551	12A2p6	cell line	sgMsh2	13405551	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	133	0	0	NA	exonic	Grk1	nonsynonymous SNV	Grk1:NM_011881:exon1:c.T434G:p.L145R	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9918481	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	13455186	12A2p6	cell line	sgMsh2	13455186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	100	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon5:c.T427C:p.Y143H,Tmem255b:NM_001143671:exon6:c.T490C:p.Y164H"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.772525631	1	0.701662	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	157	133	2	0.015037594	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.06E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr8	13764591	12A2p6	cell line	sgMsh2	13764591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	197	243	50	0.205761317	exonic	Cdc16	nonsynonymous SNV	"Cdc16:NM_001357247:exon7:c.T374G:p.V125G,Cdc16:NM_027276:exon8:c.T656G:p.V219G"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.643771359	2	0.9998292	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	14962630	12A2p6	cell line	sgMsh2	14962630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	228	91	17	0.186813187	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon16:c.A1820G:p.N607S,Arhgef10:NM_172751:exon17:c.A1937G:p.N646S"	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9999263	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	15027907	12A2p6	cell line	sgMsh2	15027907	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	39	5	1	0.2	exonic	Kbtbd11	nonsynonymous SNV	Kbtbd11:NM_029116:exon2:c.G505T:p.D169Y	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9886763	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr8	15929088	12A2p6	cell line	sgMsh2	15929088	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	159	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon55:c.A8495T:p.Y2832F	8qA1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999959	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	115	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	7.29E-07	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	21948522	12A2p6	cell line	sgMsh2	21948522	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	126	0	0	NA	exonic	Defb13	nonsynonymous SNV	Defb13:NM_139223:exon2:c.A95G:p.K32R	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999635	AAG	nonsynonymous	A	5	AAAAA	NA
M6	chr8	22027710	12A2p6	cell line	sgMsh2	22027710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	181	0	0	NA	exonic	Atp7b	nonsynonymous SNV	Atp7b:NM_007511:exon2:c.A1111G:p.T371A	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.912009425	1	0.9997963	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	22113825	12A2p6	cell line	sgMsh2	22113825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	281	0	0	NA	exonic	Nek5	nonsynonymous SNV	"Nek5:NM_001347318:exon5:c.T335C:p.L112P,Nek5:NM_177898:exon5:c.T335C:p.L112P"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	2.30E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	136	3	0	0	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9998108	CAA	nonsynonymous	NA	NA	NA	NA
M6	chr8	22365925	12A2p6	cell line	sgMsh2	22365925	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	358	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon26:c.C1740G:p.D580E	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9999899	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr8	22561194	12A2p6	cell line	sgMsh2	22561194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	89	128	26	0.203125	exonic	Slc20a2	synonymous SNV	Slc20a2:NM_011394:exon8:c.T1242C:p.S414S	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.8888607	GTG	synonymous	NA	NA	NA	NA
M6	chr8	22768462	12A2p6	cell line	sgMsh2	22768462	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	122	7	1	0.142857143	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon3:c.T80A:p.F27Y	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	1	0.7439896	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	22804011	12A2p6	cell line	sgMsh2	22804011	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	109	9	0	0	exonic	Ap3m2	nonsynonymous SNV	"Ap3m2:NM_001122820:exon2:c.A22G:p.I8V,Ap3m2:NM_029505:exon2:c.A22G:p.I8V"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9993628	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr8	23064995	12A2p6	cell line	sgMsh2	23064995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	168	27	1	0.037037037	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon2:c.A170G:p.N57S,Ank1:NM_001277280:exon2:c.A170G:p.N57S,Ank1:NM_001277281:exon2:c.A59G:p.N20S,Ank1:NM_001277284:exon2:c.A59G:p.N20S,Ank1:NM_001277286:exon2:c.A83G:p.N28S,Ank1:NM_001277289:exon2:c.A83G:p.N28S,Ank1:NM_031158:exon2:c.A83G:p.N28S"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9997582	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	23106108	12A2p6	cell line	sgMsh2	23106108	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	118	27	1	0.037037037	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon18:c.T2174C:p.V725A,Ank1:NM_001277280:exon18:c.T2174C:p.V725A,Ank1:NM_001277281:exon18:c.T2063C:p.V688A,Ank1:NM_001277284:exon18:c.T2063C:p.V688A,Ank1:NM_001277286:exon18:c.T2087C:p.V696A,Ank1:NM_001277289:exon18:c.T2087C:p.V696A,Ank1:NM_031158:exon18:c.T2087C:p.V696A"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9960434	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	275	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999996	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	25022626	12A2p6	cell line	sgMsh2	25022626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	127	389	53	0.136246787	exonic	Tm2d2	synonymous SNV	Tm2d2:NM_027194:exon4:c.A489G:p.G163G	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999658	GAG	synonymous	NA	NA	NA	NA
M6	chr8	25593874	12A2p6	cell line	sgMsh2	25593874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	251	9	1	0.111111111	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon3:c.A340G:p.T114A,Letm2:NM_173012:exon3:c.A340G:p.T114A"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.9256534	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	25666073	12A2p6	cell line	sgMsh2	25666073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	155	141	20	0.141843972	exonic	Nsd3	nonsynonymous SNV	"Nsd3:NM_001081269:exon6:c.G1655T:p.R552M,Nsd3:NM_001001735:exon7:c.G1655T:p.R552M,Nsd3:NM_001308481:exon7:c.G1655T:p.R552M,Nsd3:NM_001308482:exon7:c.G1655T:p.R552M"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9978766	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	25769390	12A2p6	cell line	sgMsh2	25769390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	95	36	4	0.111111111	exonic	Bag4	synonymous SNV	Bag4:NM_026121:exon4:c.A780G:p.A260A	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	GTG	synonymous	NA	NA	NA	NA
M6	chr8	25952049	12A2p6	cell line	sgMsh2	25952049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	255	61	7	0.114754098	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon14:c.T1447C:p.Y483H	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9997842	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	138	53	0	0	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.7450983	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	27393303	12A2p6	cell line	sgMsh2	27393303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	224	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon3:c.T226C:p.W76R,Chrnb3:NM_173212:exon4:c.T271C:p.W91R"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9821993	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr8	28694739	12A2p6	cell line	sgMsh2	28694739	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	86	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347498:exon11:c.G1732T:p.V578L,Unc5d:NM_001347500:exon12:c.G1726T:p.V576L,Unc5d:NM_001347501:exon12:c.G1765T:p.V589L,Unc5d:NM_001347499:exon13:c.G1894T:p.V632L,Unc5d:NM_153135:exon14:c.G1948T:p.V650L"	8qA2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9977995	ACT	nonsynonymous	NA	NA	NA	NA
M6	chr8	31918096	12A2p6	cell line	sgMsh2	31918096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	81	0	0	NA	exonic	Nrg1	synonymous SNV	"Nrg1:NM_001364422:exon1:c.A108G:p.E36E,Nrg1:NM_001364423:exon1:c.A108G:p.E36E,Nrg1:NM_001364424:exon1:c.A108G:p.E36E,Nrg1:NM_001364426:exon1:c.A108G:p.E36E,Nrg1:NM_001364427:exon1:c.A108G:p.E36E,Nrg1:NM_001364428:exon1:c.A108G:p.E36E,Nrg1:NM_001364431:exon1:c.A108G:p.E36E,Nrg1:NM_178591:exon1:c.A108G:p.E36E"	8qA3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9992862	GTT	synonymous	NA	NA	NA	NA
M6	chr8	33334204	12A2p6	cell line	sgMsh2	33334204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	140	24	2	0.083333333	exonic	Wrn	synonymous SNV	"Wrn:NM_001122822:exon7:c.T678C:p.D226D,Wrn:NM_011721:exon7:c.T678C:p.D226D"	8qA3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	TAT	synonymous	NA	NA	NA	NA
M6	chr8	34841777	12A2p6	cell line	sgMsh2	34841777	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	270	178	22	0.123595506	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon22:c.A3327C:p.K1109N	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.70E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	36129007	12A2p6	cell line	sgMsh2	36129007	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	101	35	9	0.257142857	exonic	Prag1	synonymous SNV	Prag1:NM_172911:exon4:c.C2091T:p.H697H	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.7363204	ACC	synonymous	NA	NA	NA	NA
M6	chr8	40499372	12A2p6	cell line	sgMsh2	40499372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	97	247	43	0.174089069	exonic	Cnot7	nonsynonymous SNV	"Cnot7:NM_001361938:exon4:c.T541C:p.F181L,Cnot7:NM_001271542:exon5:c.T541C:p.F181L,Cnot7:NM_001271543:exon5:c.T541C:p.F181L,Cnot7:NM_011135:exon5:c.T541C:p.F181L,Cnot7:NM_001361939:exon6:c.T580C:p.F194L"	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9849931	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr8	40912583	12A2p6	cell line	sgMsh2	40912583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	147	4	0	0	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon9:c.A1402G:p.M468V,Slc7a2:NM_007514:exon9:c.A1399G:p.M467V"	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	41343555	12A2p6	cell line	sgMsh2	41343555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	229	706	195	0.276203966	exonic	Asah1	synonymous SNV	Asah1:NM_019734:exon12:c.A1002G:p.T334T	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	4.15E-08	GTG	synonymous	NA	NA	NA	NA
M6	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	567	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	43569504	12A2p6	cell line	sgMsh2	43569504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	494	0	0	NA	exonic	Adam26a	synonymous SNV	Adam26a:NM_010085:exon2:c.T948G:p.L316L	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	1.00E-09	AAA	synonymous	NA	NA	NA	NA
M6	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.05	696	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	44951515	12A2p6	cell line	sgMsh2	44951515	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	314	401	18	0.044887781	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon1:c.T1302C:p.H434H	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1	ATT	synonymous	NA	NA	NA	NA
M6	chr8	44953091	12A2p6	cell line	sgMsh2	44953091	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	216	334	6	0.017964072	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon1:c.T2878G:p.S960A	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	GTC	nonsynonymous	GTCA	14	GTCAGTCAAGTCAG	NA
M6	chr8	45010006	12A2p6	cell line	sgMsh2	45010006	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	313	62	0.198083067	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon4:c.G3859A:p.A1287T	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999968	TGC	nonsynonymous	NA	NA	NA	NA
M6	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	176	407	5	0.012285012	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.02E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	45277024	12A2p6	cell line	sgMsh2	45277024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	100	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon8:c.A819C:p.E273D	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997965	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	45381602	12A2p6	cell line	sgMsh2	45381602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	77	0	0	NA	exonic	Fam149a	synonymous SNV	Fam149a:NM_153535:exon1:c.T159C:p.T53T	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9990705	AAG	synonymous	NA	NA	NA	NA
M6	chr8	45772633	12A2p6	cell line	sgMsh2	45772633	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	127	160	26	0.1625	exonic	Sorbs2	nonsynonymous SNV	"Sorbs2:NM_001310708:exon8:c.C572T:p.A191V,Sorbs2:NM_001205219:exon11:c.C779T:p.A260V,Sorbs2:NM_001310707:exon11:c.C710T:p.A237V,Sorbs2:NM_172752:exon11:c.C779T:p.A260V"	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999658	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr8	45943338	12A2p6	cell line	sgMsh2	45943338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	299	0	0	NA	exonic	Ccdc110	synonymous SNV	Ccdc110:NM_001033246:exon6:c.A2265T:p.I755I	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.9666252	TAC	synonymous	NA	NA	NA	NA
M6	chr8	45980631	12A2p6	cell line	sgMsh2	45980631	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	123	96	16	0.166666667	exonic	Ufsp2	nonsynonymous SNV	Ufsp2:NM_138668:exon4:c.A301C:p.T101P	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9997701	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	46170111	12A2p6	cell line	sgMsh2	46170111	A	-	Deletion	Strelka2;Vardict	2	0.1404	285	43	1	0.023255814	exonic	Cfap97	frameshift deletion	"Cfap97:NM_001357215:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_025747:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_001357216:exon3:c.537delA:p.N182Tfs*1"	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.75321249	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M6	chr8	46531903	12A2p6	cell line	sgMsh2	46531903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	139	118	24	0.203389831	exonic	Acsl1	nonsynonymous SNV	"Acsl1:NM_001302163:exon18:c.A1757G:p.Q586R,Acsl1:NM_007981:exon18:c.A1757G:p.Q586R"	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.9867536	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	226	60	3	0.05	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9999973	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	47192082	12A2p6	cell line	sgMsh2	47192082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	73	0	0	NA	exonic	Stox2	nonsynonymous SNV	"Stox2:NM_001114311:exon3:c.A2342G:p.D781G,Stox2:NM_001286376:exon3:c.A2342G:p.D781G,Stox2:NM_175162:exon3:c.A2156G:p.D719G,Stox2:NM_001363119:exon4:c.A1718G:p.D573G"	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	GTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M6	chr8	47193435	12A2p6	cell line	sgMsh2	47193435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	110	0	0	NA	exonic	Stox2	nonsynonymous SNV	"Stox2:NM_001114311:exon3:c.A989G:p.H330R,Stox2:NM_001286376:exon3:c.A989G:p.H330R,Stox2:NM_175162:exon3:c.A803G:p.H268R,Stox2:NM_001363119:exon4:c.A365G:p.H122R"	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998949	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	123	111	2	0.018018018	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M6	chr8	47822604	12A2p6	cell line	sgMsh2	47822604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	107	0	0	NA	exonic	Cldn24	synonymous SNV	Cldn24:NM_001111318:exon1:c.T462C:p.P154P	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CTG	synonymous	NA	NA	NA	NA
M6	chr8	47858780	12A2p6	cell line	sgMsh2	47858780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	127	106	25	0.235849057	exonic	Wwc2	synonymous SNV	Wwc2:NM_133791:exon15:c.T2347C:p.L783L	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8753131	AAC	synonymous	NA	NA	NA	NA
M6	chr8	47883537	12A2p6	cell line	sgMsh2	47883537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	89	149	18	0.120805369	exonic	Wwc2	nonsynonymous SNV	Wwc2:NM_133791:exon6:c.A689G:p.K230R	8qB1.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	53587238	12A2p6	cell line	sgMsh2	53587238	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	119	11	7	0.636363636	exonic	Neil3	nonsynonymous SNV	Neil3:NM_146208:exon10:c.T1728A:p.N576K	8qB1.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999942	AAT	nonsynonymous	A	6	AAAAAA	NA
M6	chr8	53608826	12A2p6	cell line	sgMsh2	53608826	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	154	10	4	0.4	exonic	Neil3	synonymous SNV	Neil3:NM_146208:exon4:c.G519A:p.Q173Q	8qB1.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999943	CCT	synonymous	NA	NA	NA	NA
M6	chr8	55871464	12A2p6	cell line	sgMsh2	55871464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	154	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.T1954C:p.F652L	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999943	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	55873143	12A2p6	cell line	sgMsh2	55873143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	210	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.A275G:p.Y92C	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	250	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.144848556	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	228	4	0	0	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	56542923	12A2p6	cell line	sgMsh2	56542923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	260	72	11	0.152777778	exonic	Cep44	nonsynonymous SNV	Cep44:NM_001009951:exon5:c.T490C:p.F164L	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.9999986	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	179	496	13	0.026209677	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.498922803	2	0.9997297	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr8	60896764	12A2p6	cell line	sgMsh2	60896764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	192	142	29	0.204225352	exonic	Hpf1	nonsynonymous SNV	"Hpf1:NM_001379027:exon4:c.A425G:p.Y142C,Hpf1:NM_028299:exon4:c.A425G:p.Y142C"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	60922977	12A2p6	cell line	sgMsh2	60922977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	304	41	9	0.219512195	exonic	Clcn3	synonymous SNV	"Clcn3:NM_007711:exon10:c.T1788C:p.A596A,Clcn3:NM_173876:exon10:c.T1881C:p.A627A,Clcn3:NM_173873:exon11:c.T1962C:p.A654A,Clcn3:NM_173874:exon11:c.T1962C:p.A654A"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9999992	CAG	synonymous	NA	NA	NA	NA
M6	chr8	60933131	12A2p6	cell line	sgMsh2	60933131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	150	33	11	0.333333333	exonic	Clcn3	nonsynonymous SNV	"Clcn3:NM_007711:exon6:c.T712C:p.F238L,Clcn3:NM_173876:exon6:c.T805C:p.F269L,Clcn3:NM_173873:exon7:c.T886C:p.F296L,Clcn3:NM_173874:exon7:c.T886C:p.F296L"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999925	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	61384775	12A2p6	cell line	sgMsh2	61384775	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	18	90	20	0.222222222	exonic	Sh3rf1	nonsynonymous SNV	Sh3rf1:NM_021506:exon11:c.C2353T:p.P785S	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9560275	TCC	nonsynonymous	GATGGT	12	GATGGTGATGGT	NA
M6	chr8	64968763	12A2p6	cell line	sgMsh2	64968763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	193	56	7	0.125	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T595A:p.Y199N,Tmem192:NM_028427:exon6:c.T730A:p.Y244N"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	64968767	12A2p6	cell line	sgMsh2	64968767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	190	57	9	0.157894737	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T599C:p.L200P,Tmem192:NM_028427:exon6:c.T734C:p.L245P"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	64983490	12A2p6	cell line	sgMsh2	64983490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	133	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A307G:p.T103A	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9985094	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	64983657	12A2p6	cell line	sgMsh2	64983657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	141	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A140G:p.Q47R	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.836902767	1	0.9701163	CTG	nonsynonymous	CTGCC	11	CTGCCCTGCCC	NA
M6	chr8	65001561	12A2p6	cell line	sgMsh2	65001561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	200	0	0	NA	exonic	Trim60	nonsynonymous SNV	Trim60:NM_153097:exon2:c.A35G:p.K12R	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	65086574	12A2p6	cell line	sgMsh2	65086574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	165	71	19	0.267605634	exonic	Smim31	nonsynonymous SNV	Smim31:NM_001352886:exon3:c.A202G:p.T68A	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999972	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	66681852	12A2p6	cell line	sgMsh2	66681852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Npy5r	synonymous SNV	"Npy5r:NM_001358957:exon2:c.A288G:p.T96T,Npy5r:NM_001358958:exon2:c.A288G:p.T96T,Npy5r:NM_016708:exon2:c.A288G:p.T96T"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999864	CTG	synonymous	NA	NA	NA	NA
M6	chr8	66704576	12A2p6	cell line	sgMsh2	66704576	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	133	0	0	NA	exonic	Npy1r	nonsynonymous SNV	"Npy1r:NM_010934:exon2:c.T647G:p.V216G,Npy1r:NM_001358955:exon3:c.T647G:p.V216G"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9589197	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	66704873	12A2p6	cell line	sgMsh2	66704873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	223	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon3:c.T834C:p.L278L,Npy1r:NM_001358955:exon4:c.T834C:p.L278L"	8qB3.1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	TTA	synonymous	NA	NA	NA	NA
M6	chr8	69102822	12A2p6	cell line	sgMsh2	69102822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	203	242	38	0.157024793	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon7:c.T664C:p.Y222H	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	69823579	12A2p6	cell line	sgMsh2	69823579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	139	32	0	0	exonic	Lpar2	nonsynonymous SNV	Lpar2:NM_020028:exon2:c.A17G:p.Y6C	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999845	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	69880970	12A2p6	cell line	sgMsh2	69880970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	55	0	0	NA	exonic	Cilp2	nonsynonymous SNV	Cilp2:NM_026818:exon8:c.A3377G:p.N1126S	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9646098	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	95	41	3	0.073170732	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.5499817	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	70257220	12A2p6	cell line	sgMsh2	70257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	56	12	2	0.166666667	exonic	Sugp2	synonymous SNV	"Sugp2:NM_001168290:exon7:c.T2490C:p.G830G,Sugp2:NM_172755:exon7:c.T2490C:p.G830G"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9962884	GTG	synonymous	NA	NA	NA	NA
M6	chr8	70294725	12A2p6	cell line	sgMsh2	70294725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	204	124	19	0.153225806	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1064G:p.Y355C	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9999985	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	70294744	12A2p6	cell line	sgMsh2	70294744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	176	113	12	0.10619469	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1045G:p.I349V	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.954927516	1	0.9999807	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr8	71348698	12A2p6	cell line	sgMsh2	71348698	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	128	88	13	0.147727273	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3496G:p.T1166A,Myo9b:NM_001142323:exon22:c.A3496G:p.T1166A,Myo9b:NM_015742:exon22:c.A3496G:p.T1166A"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9997198	CAC	nonsynonymous	CACC	8	CACCCACC	NA
M6	chr8	71349146	12A2p6	cell line	sgMsh2	71349146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	113	58	14	0.24137931	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3944C:p.D1315A,Myo9b:NM_001142323:exon22:c.A3944C:p.D1315A,Myo9b:NM_015742:exon23:c.A3911C:p.D1304A"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	71351019	12A2p6	cell line	sgMsh2	71351019	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	62	72	6	0.083333333	exonic	Myo9b	synonymous SNV	"Myo9b:NM_001142322:exon24:c.C4146T:p.G1382G,Myo9b:NM_001142323:exon24:c.C4146T:p.G1382G,Myo9b:NM_015742:exon25:c.C4107T:p.G1369G"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9975	GCC	synonymous	NA	NA	NA	NA
M6	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	196	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	71461477	12A2p6	cell line	sgMsh2	71461477	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	94	27	3	0.111111111	exonic	Abhd8	nonsynonymous SNV	Abhd8:NM_022419:exon2:c.T506C:p.V169A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.820808483	1	0.9200232	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	71482301	12A2p6	cell line	sgMsh2	71482301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	186	110	15	0.136363636	exonic	Ano8	nonsynonymous SNV	Ano8:NM_001164679:exon10:c.T1256C:p.V419A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	71620653	12A2p6	cell line	sgMsh2	71620653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	203	209	34	0.162679426	exonic	Colgalt1	synonymous SNV	"Colgalt1:NM_001364443:exon7:c.T987C:p.T329T,Colgalt1:NM_146211:exon7:c.T987C:p.T329T"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9999561	CTT	synonymous	NA	NA	NA	NA
M6	chr8	71641433	12A2p6	cell line	sgMsh2	71641433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	96	9	0	0	exonic	Unc13a	synonymous SNV	Unc13a:NM_001029873:exon33:c.A4023G:p.V1341V	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9997349	GTA	synonymous	NA	NA	NA	NA
M6	chr8	71679027	12A2p6	cell line	sgMsh2	71679027	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	327	54	12	0.222222222	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon4:c.C358A:p.L120M,Jak3:NM_010589:exon4:c.C358A:p.L120M"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.895915141	1	0.9999942	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr8	71681541	12A2p6	cell line	sgMsh2	71681541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	41	22	11	0.5	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon10:c.A1286G:p.Q429R,Jak3:NM_010589:exon10:c.A1286G:p.Q429R"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.009936071	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	71913129	12A2p6	cell line	sgMsh2	71913129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	145	5	0	0	exonic	Zfp882	nonsynonymous SNV	Zfp882:NM_001166645:exon2:c.T11C:p.V4A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999896	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	71965814	12A2p6	cell line	sgMsh2	71965814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	195	26	5	0.192307692	exonic	Zfp961	synonymous SNV	Zfp961:NM_001164581:exon2:c.T87C:p.D29D	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9999852	ATG	synonymous	NA	NA	NA	NA
M6	chr8	72002469	12A2p6	cell line	sgMsh2	72002469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	68	0	0	NA	exonic	Cyp4f18	nonsynonymous SNV	Cyp4f18:NM_024444:exon3:c.T262A:p.C88S	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9980018	CAT	nonsynonymous	GCAT	8	GCATGCAT	NA
M6	chr8	72468438	12A2p6	cell line	sgMsh2	72468438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	61	34	7	0.205882353	exonic	Cherp	synonymous SNV	"Cherp:NM_001359024:exon6:c.A756G:p.V252V,Cherp:NM_138585:exon6:c.A723G:p.V241V"	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.7804503	CTA	synonymous	NA	NA	NA	NA
M6	chr8	72711624	12A2p6	cell line	sgMsh2	72711624	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	157	0	0	NA	exonic	Nwd1	synonymous SNV	Nwd1:NM_176940:exon19:c.T4299C:p.A1433A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.300426634	3	0.9999959	CTG	synonymous	NA	NA	NA	NA
M6	chr8	72741820	12A2p6	cell line	sgMsh2	72741820	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	113	34	7	0.205882353	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon8:c.T923C:p.V308A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9997886	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	72753204	12A2p6	cell line	sgMsh2	72753204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	104	22	4	0.181818182	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon15:c.T2537C:p.V846A	8qB3.3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9995698	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	75121622	12A2p6	cell line	sgMsh2	75121622	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	209	125	0	0	exonic	Mcm5	frameshift deletion	"Mcm5:NM_001302540:exon12:c.1498delG:p.E501Rfs*15,Mcm5:NM_008566:exon12:c.1498delG:p.E501Rfs*15"	8qC1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6	chr8	77310815	12A2p6	cell line	sgMsh2	77310815	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	185	35	0	0	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon18:c.G1717A:p.A573T,Arhgap10:NM_001363420:exon18:c.G1408A:p.A470T,Arhgap10:NM_001363418:exon19:c.G1783A:p.A595T,Arhgap10:NM_001363419:exon19:c.G1474A:p.A492T,Arhgap10:NM_001363421:exon19:c.G1474A:p.A492T,Arhgap10:NM_030113:exon19:c.G1783A:p.A595T"	8qC1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.777890392	1	0.5760734	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr8	79274268	12A2p6	cell line	sgMsh2	79274268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	175	21	2	0.095238095	exonic	Mmaa	nonsynonymous SNV	"Mmaa:NM_133823:exon4:c.T560C:p.L187P,Mmaa:NM_001363471:exon5:c.T74C:p.L25P,Mmaa:NM_001363470:exon6:c.T560C:p.L187P,Mmaa:NM_001363472:exon6:c.T74C:p.L25P"	8qC1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999986	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	79667617	12A2p6	cell line	sgMsh2	79667617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	179	128	24	0.1875	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon16:c.T1557C:p.H519H,Otud4:NM_001256033:exon16:c.T1560C:p.H520H"	8qC1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9960155	ATA	synonymous	NA	NA	NA	NA
M6	chr8	80612038	12A2p6	cell line	sgMsh2	80612038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	172	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.A959G:p.D320G	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.852997051	1	0.9915012	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	80985050	12A2p6	cell line	sgMsh2	80985050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	208	59	7	0.118644068	exonic	Usp38	synonymous SNV	Usp38:NM_027554:exon9:c.A2355G:p.S785S	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	GTG	synonymous	NA	NA	NA	NA
M6	chr8	82010546	12A2p6	cell line	sgMsh2	82010546	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	171	24	0	0	exonic	Inpp4b	nonsynonymous SNV	"Inpp4b:NM_001297593:exon16:c.T1388G:p.V463G,Inpp4b:NM_001024617:exon17:c.T1520G:p.V507G,Inpp4b:NM_001297591:exon17:c.T1571G:p.V524G,Inpp4b:NM_001297596:exon17:c.T1571G:p.V524G"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9998836	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	82343311	12A2p6	cell line	sgMsh2	82343311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	275	14	1	0.071428571	exonic	Il15	synonymous SNV	"Il15:NM_001254747:exon5:c.A123T:p.V41V,Il15:NM_008357:exon5:c.A123T:p.V41V"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9999213	CTA	synonymous	NA	NA	NA	NA
M6	chr8	82344394	12A2p6	cell line	sgMsh2	82344394	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	373	22	0	0	exonic	Il15	nonsynonymous SNV	"Il15:NM_001254747:exon4:c.A91T:p.I31F,Il15:NM_008357:exon4:c.A91T:p.I31F"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr8	83354721	12A2p6	cell line	sgMsh2	83354721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	109	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon2:c.A102C:p.Q34H	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9998877	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	83368168	12A2p6	cell line	sgMsh2	83368168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	155	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon8:c.G833T:p.W278L	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.5681717	TGG	nonsynonymous	T	5	TTTTT	NA
M6	chr8	83573085	12A2p6	cell line	sgMsh2	83573085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	44	483	107	0.221532091	exonic	Tecr	nonsynonymous SNV	"Tecr:NM_027179:exon5:c.T281C:p.V94A,Tecr:NM_134118:exon6:c.T326C:p.V109A"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9918357	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	83668275	12A2p6	cell line	sgMsh2	83668275	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	64	19	5	0.263157895	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.T380C:p.L127P	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.461369474	2	0.7251815	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	83668425	12A2p6	cell line	sgMsh2	83668425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	93	29	4	0.137931034	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.A530G:p.H177R	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.8910481	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	83669445	12A2p6	cell line	sgMsh2	83669445	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	123	29	8	0.275862069	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon3:c.G1130A:p.G377D	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9995529	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	152	148	6	0.040540541	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.99999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	83725997	12A2p6	cell line	sgMsh2	83725997	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	155	307	66	0.214983713	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon11:c.A1161G:p.I387M,Adgre5:NM_001163031:exon11:c.A1155G:p.I385M,Adgre5:NM_001163030:exon12:c.A1308G:p.I436M,Adgre5:NM_011925:exon13:c.A1443G:p.I481M"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.9998685	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	84090184	12A2p6	cell line	sgMsh2	84090184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	72	14	2	0.142857143	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon10:c.A1343G:p.Y448C	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.822765	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	84092987	12A2p6	cell line	sgMsh2	84092987	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	107	32	4	0.125	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.G1927A:p.E643K	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr8	84093075	12A2p6	cell line	sgMsh2	84093075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	119	27	6	0.222222222	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.A2015G:p.Y672C	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	0.9927523	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	84176098	12A2p6	cell line	sgMsh2	84176098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	68	0	0	NA	exonic	Nanos3	nonsynonymous SNV	"Nanos3:NM_001357361:exon1:c.G434A:p.R145H,Nanos3:NM_194059:exon1:c.G434A:p.R145H"	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.815443721	1	0.897341	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr8	84253982	12A2p6	cell line	sgMsh2	84253982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	148	96	10	0.104166667	exonic	Mri1	nonsynonymous SNV	Mri1:NM_026423:exon4:c.A830G:p.Y277C	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999915	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	84673217	12A2p6	cell line	sgMsh2	84673217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	147	166	22	0.13253012	exonic	Nacc1	nonsynonymous SNV	Nacc1:NM_025788:exon6:c.T1370C:p.V457A	8qC2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9993368	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	84913049	12A2p6	cell line	sgMsh2	84913049	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	168	4	0	0	exonic	Mast1	nonsynonymous SNV	Mast1:NM_019945:exon26:c.A3650C:p.Q1217P	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.713513256	2	0.9601518	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	84990752	12A2p6	cell line	sgMsh2	84990752	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	63	42	2	0.047619048	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001167991:exon1:c.G45T:p.W15C,Hook2:NM_001363497:exon1:c.G45T:p.W15C,Hook2:NM_001363498:exon1:c.G45T:p.W15C,Hook2:NM_001372357:exon1:c.G45T:p.W15C,Hook2:NM_001372358:exon1:c.G45T:p.W15C,Hook2:NM_001372359:exon1:c.G45T:p.W15C,Hook2:NM_001372360:exon1:c.G45T:p.W15C,Hook2:NM_001372361:exon1:c.G22T:p.V8F,Hook2:NM_133255:exon1:c.G45T:p.W15C"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9976594	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	85055070	12A2p6	cell line	sgMsh2	85055070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	179	134	14	0.104477612	exonic	Tnpo2	nonsynonymous SNV	"Tnpo2:NM_001122843:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364031:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364032:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364033:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364034:exon22:c.T2450C:p.M817T,Tnpo2:NM_001379096:exon22:c.T2480C:p.M827T,Tnpo2:NM_145390:exon22:c.T2480C:p.M827T"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9999397	ATG	nonsynonymous	ATG	8	ATGATGAT	NA
M6	chr8	85085445	12A2p6	cell line	sgMsh2	85085445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	137	118	24	0.203389831	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon4:c.T527C:p.L176P	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9995164	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	85359107	12A2p6	cell line	sgMsh2	85359107	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	170	1	0	0	exonic	Mylk3	nonsynonymous SNV	"Mylk3:NM_001297612:exon3:c.T398C:p.V133A,Mylk3:NM_175441:exon3:c.T797C:p.V266A"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.740337063	2	0.8468423	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	85553352	12A2p6	cell line	sgMsh2	85553352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	95	571	97	0.169877408	exonic	Dnaja2	nonsynonymous SNV	Dnaja2:NM_019794:exon3:c.A197G:p.Y66C	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997168	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	236	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	86527358	12A2p6	cell line	sgMsh2	86527358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	117	0	0	NA	exonic	Abcc12	frameshift deletion	Abcc12:NM_172912:exon20:c.2796delT:p.F932Lfs*7	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.901279903	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr8	88308681	12A2p6	cell line	sgMsh2	88308681	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	135	0	0	NA	exonic	Adcy7	nonsynonymous SNV	"Adcy7:NM_001037723:exon5:c.T212G:p.L71R,Adcy7:NM_001037724:exon5:c.T212G:p.L71R,Adcy7:NM_001109756:exon5:c.T212G:p.L71R,Adcy7:NM_007406:exon5:c.T212G:p.L71R"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999798	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	88309697	12A2p6	cell line	sgMsh2	88309697	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	103	0	0	NA	exonic	Adcy7	synonymous SNV	"Adcy7:NM_001037723:exon6:c.T381C:p.P127P,Adcy7:NM_001037724:exon6:c.T381C:p.P127P,Adcy7:NM_001109756:exon6:c.T381C:p.P127P,Adcy7:NM_007406:exon6:c.T381C:p.P127P"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.622312314	2	0.9875667	CTT	synonymous	NA	NA	NA	NA
M6	chr8	89032825	12A2p6	cell line	sgMsh2	89032825	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	91	0	0	NA	exonic	Sall1	nonsynonymous SNV	"Sall1:NM_001371070:exon2:c.G650A:p.G217E,Sall1:NM_001371069:exon3:c.G650A:p.G217E,Sall1:NM_021390:exon3:c.G650A:p.G217E"	8qC3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	CCC	nonsynonymous	C	5	CCCCC	NA
M6	chr8	90933831	12A2p6	cell line	sgMsh2	90933832	AT	GC	DBS	Mutect2;Vardict	2	0.213	194	26	4	0.153846154	exonic	Chd9	nonframeshift substitution	"Chd9:NM_001310530:exon1:c.1418_1419GC:p.H473R,Chd9:NM_177224:exon3:c.1418_1419GC:p.H473R"	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	90994482	12A2p6	cell line	sgMsh2	90994482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	168	46	7	0.152173913	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon12:c.A2897G:p.Y966C,Chd9:NM_177224:exon14:c.A2897G:p.Y966C"	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.9835465	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	91087019	12A2p6	cell line	sgMsh2	91087019	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	111	81	11	0.135802469	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon7:c.A891T:p.L297F,Rbl2:NM_001282001:exon8:c.A1020T:p.L340F,Rbl2:NM_011250:exon8:c.A1020T:p.L340F"	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	91096777	12A2p6	cell line	sgMsh2	91096777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	130	81	12	0.148148148	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon10:c.A1332C:p.K444N,Rbl2:NM_011250:exon11:c.A1461C:p.K487N"	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.8754569	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M6	chr8	91220227	12A2p6	cell line	sgMsh2	91220227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	211	15	2	0.133333333	exonic	Rpgrip1l	nonsynonymous SNV	Rpgrip1l:NM_173431:exon26:c.C3745T:p.H1249Y	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TGA	nonsynonymous	NA	NA	NA	NA
M6	chr8	91401873	12A2p6	cell line	sgMsh2	91401873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	200	107	11	0.102803738	exonic	Fto	nonsynonymous SNV	Fto:NM_011936:exon2:c.T112C:p.F38L	8qC4	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.692054211	2	0.9962823	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	92360634	12A2p6	cell line	sgMsh2	92360634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	68	50	3	0.06	exonic	Irx5	nonsynonymous SNV	Irx5:NM_018826:exon3:c.T1193C:p.V398A	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.985965	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	92678548	12A2p6	cell line	sgMsh2	92678548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	82	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.T1043C:p.L348S,Irx6:NM_022428:exon5:c.T1043C:p.L348S"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9973231	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	93025607	12A2p6	cell line	sgMsh2	93025607	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	224	0	0	NA	exonic	Ces1a	nonsynonymous SNV	Ces1a:NM_001013764:exon10:c.A1121C:p.K374T	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.16094284	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	205	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.00E-09	CAA	synonymous	NA	NA	NA	NA
M6	chr8	94172860	12A2p6	cell line	sgMsh2	94172860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	139	165	18	0.109090909	exonic	Mt2	nonsynonymous SNV	Mt2:NM_008630:exon1:c.T13A:p.C5S	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	0.9999637	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	94353051	12A2p6	cell line	sgMsh2	94353051	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	214	0	0	NA	exonic	Slc12a3	synonymous SNV	"Slc12a3:NM_001205311:exon21:c.A2506C:p.R836R,Slc12a3:NM_019415:exon21:c.A2503C:p.R835R"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.681324688	2	0.9989794	GAG	synonymous	NA	NA	NA	NA
M6	chr8	94649777	12A2p6	cell line	sgMsh2	94649777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	157	76	14	0.184210526	exonic	Rspry1	nonsynonymous SNV	"Rspry1:NM_001359093:exon12:c.A1298C:p.D433A,Rspry1:NM_026274:exon12:c.A1298C:p.D433A"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.996465	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	94671326	12A2p6	cell line	sgMsh2	94671326	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	113	176	49	0.278409091	exonic	Arl2bp	nonsynonymous SNV	"Arl2bp:NM_024191:exon4:c.A239C:p.Q80P,Arl2bp:NM_024269:exon4:c.A206C:p.Q69P"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999138	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	94906038	12A2p6	cell line	sgMsh2	94906038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	90	41	6	0.146341463	exonic	Ccdc102a	nonsynonymous SNV	Ccdc102a:NM_001033533:exon7:c.A1310C:p.E437A	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9952261	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	95003584	12A2p6	cell line	sgMsh2	95003584	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	27	130	2	0.015384615	exonic	Adgrg1	frameshift deletion	"Adgrg1:NM_001198894:exon3:c.398delC:p.P134Rfs*1,Adgrg1:NM_018882:exon3:c.398delC:p.P134Rfs*1"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr8	95095417	12A2p6	cell line	sgMsh2	95095417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	95	24	5	0.208333333	exonic	Katnb1	nonsynonymous SNV	Katnb1:NM_028805:exon10:c.A770G:p.Y257C	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	0.9785142	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	95102721	12A2p6	cell line	sgMsh2	95102721	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	130	69	9	0.130434783	exonic	Kifc3	synonymous SNV	"Kifc3:NM_001145832:exon13:c.C1527T:p.H509H,Kifc3:NM_001372315:exon15:c.C1938T:p.H646H,Kifc3:NM_010631:exon15:c.C1938T:p.H646H,Kifc3:NM_001372316:exon16:c.C1725T:p.H575H,Kifc3:NM_001372317:exon16:c.C1725T:p.H575H,Kifc3:NM_001145831:exon17:c.C1800T:p.H600H,Kifc3:NM_001372312:exon17:c.C2406T:p.H802H,Kifc3:NM_001372314:exon17:c.C2259T:p.H753H,Kifc3:NM_001372313:exon18:c.C2259T:p.H753H"	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.5971376	CGT	synonymous	NA	NA	NA	NA
M6	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	130	215	8	0.037209302	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999871	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	95740989	12A2p6	cell line	sgMsh2	95740989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	216	179	24	0.134078212	exonic	Cnot1	synonymous SNV	"Cnot1:NM_001205226:exon32:c.T4494C:p.C1498C,Cnot1:NM_001372351:exon32:c.T4497C:p.C1499C,Cnot1:NM_001372353:exon32:c.T4515C:p.C1505C,Cnot1:NM_153164:exon32:c.T4500C:p.C1500C,Cnot1:NM_178078:exon32:c.T4500C:p.C1500C"	8qD1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9999823	AAC	synonymous	AAC	8	AACAACAA	NA
M6	chr8	95760148	12A2p6	cell line	sgMsh2	95760148	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	133	199	34	0.170854271	exonic	Cnot1	nonsynonymous SNV	"Cnot1:NM_001205226:exon16:c.C1924T:p.P642S,Cnot1:NM_001372351:exon16:c.C1930T:p.P644S,Cnot1:NM_001372353:exon16:c.C1930T:p.P644S,Cnot1:NM_153164:exon16:c.C1930T:p.P644S,Cnot1:NM_178078:exon16:c.C1930T:p.P644S"	8qD1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	2	0.5514535	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr8	99031048	12A2p6	cell line	sgMsh2	99031048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	172	0	0	NA	exonic	Cdh8	synonymous SNV	"Cdh8:NM_001039154:exon12:c.T1917A:p.V639V,Cdh8:NM_001285913:exon12:c.T1917A:p.V639V,Cdh8:NM_001285914:exon12:c.T1917A:p.V639V,Cdh8:NM_007667:exon12:c.T1917A:p.V639V"	8qD1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.992480845	1	0.9999973	GAA	synonymous	NA	NA	NA	NA
M6	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	230	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.375533293	3	0.9991058	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr8	104322418	12A2p6	cell line	sgMsh2	104322418	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	135	0	0	NA	exonic	Cmtm2b	frameshift deletion	Cmtm2b:NM_028524:exon1:c.64delA:p.G23Afs*23	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	136	172	0	0	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.9999875	CTT	synonymous	NA	NA	NA	NA
M6	chr8	104619895	12A2p6	cell line	sgMsh2	104619895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	65	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon6:c.T676C:p.Y226H,Cdh16:NM_001252628:exon7:c.T766C:p.Y256H,Cdh16:NM_007663:exon7:c.T766C:p.Y256H"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.989008	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	104621641	12A2p6	cell line	sgMsh2	104621641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	80	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon5:c.T353C:p.L118P,Cdh16:NM_001252628:exon6:c.T443C:p.L148P,Cdh16:NM_007663:exon6:c.T443C:p.L148P"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9970476	GAG	nonsynonymous	AGGAAG	12	AGGAAGAGGAAG	NA
M6	chr8	104741414	12A2p6	cell line	sgMsh2	104741414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	132	0	0	NA	exonic	Ces2a	stoploss	"Ces2a:NM_001190330:exon11:c.T1576C:p.X526Q,Ces2a:NM_133960:exon12:c.T1675C:p.X559Q"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	2	0.6055703	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	389	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	GAC	synonymous	NA	NA	NA	NA
M6	chr8	104954091	12A2p6	cell line	sgMsh2	104954091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	265	0	0	NA	exonic	Ces2f	nonsynonymous SNV	"Ces2f:NM_001357269:exon9:c.A1091G:p.N364S,Ces2f:NM_001079865:exon11:c.A1484G:p.N495S"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.804714199	1	0.881784	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	104968392	12A2p6	cell line	sgMsh2	104968392	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	102	1	1	1	exonic	Ces2g	nonsynonymous SNV	Ces2g:NM_197999:exon12:c.G1644T:p.E548D	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9969798	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	157	179	7	0.039106145	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	3.56E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	105178680	12A2p6	cell line	sgMsh2	105178680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	164	218	32	0.146788991	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.T253C:p.Y85H,Cbfb:NM_001161458:exon3:c.T253C:p.Y85H,Cbfb:NM_022309:exon3:c.T253C:p.Y85H"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.999994	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	105332119	12A2p6	cell line	sgMsh2	105332119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	129	71	18	0.253521127	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon14:c.T2216C:p.L739P	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.99997	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	105375733	12A2p6	cell line	sgMsh2	105375733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	115	0	0	NA	exonic	Plekhg4	nonsynonymous SNV	"Plekhg4:NM_001081333:exon1:c.A353G:p.N118S,Plekhg4:NM_001364406:exon3:c.A461G:p.N154S"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999244	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	105458499	12A2p6	cell line	sgMsh2	105458499	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	138	0	0	NA	exonic	Lrrc36	nonsynonymous SNV	"Lrrc36:NM_001033371:exon9:c.G1544T:p.G515V,Lrrc36:NM_001170789:exon9:c.G1550T:p.G517V,Lrrc36:NM_001170788:exon12:c.G1913T:p.G638V"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9966164	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	105522199	12A2p6	cell line	sgMsh2	105522199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	133	0	0	NA	exonic	Hsd11b2	nonsynonymous SNV	Hsd11b2:NM_008289:exon2:c.A322G:p.T108A	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9969446	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	105700789	12A2p6	cell line	sgMsh2	105700789	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	87	68	7	0.102941176	exonic	Acd	synonymous SNV	Acd:NM_001012638:exon2:c.T150A:p.P50P	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9379301	CAG	synonymous	NA	NA	NA	NA
M6	chr8	105708453	12A2p6	cell line	sgMsh2	105708453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	120	0	0	NA	exonic	4933405L10Rik	synonymous SNV	"4933405L10Rik:NM_001357256:exon1:c.A22C:p.R8R,4933405L10Rik:NM_027655:exon1:c.A22C:p.R8R"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999457	GAG	synonymous	NA	NA	NA	NA
M6	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	163	56	0	0	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.24E-09	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr8	105945456	12A2p6	cell line	sgMsh2	105945456	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	73	73	16	0.219178082	exonic	Slc12a4	nonsynonymous SNV	"Slc12a4:NM_001253804:exon20:c.C2629T:p.R877W,Slc12a4:NM_009195:exon20:c.C2623T:p.R875W"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9987897	CGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	127	116	18	0.155172414	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9981651	GGC	synonymous	NA	NA	NA	NA
M6	chr8	105996314	12A2p6	cell line	sgMsh2	105996314	C	A	SNV	Mutect2;Vardict	2	0.054	124	0	0	NA	exonic	Dpep2	nonsynonymous SNV	Dpep2:NM_176913:exon1:c.G81T:p.K27N	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999791	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr8	106011354	12A2p6	cell line	sgMsh2	106011354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	72	16	1	0.0625	exonic	Ddx28	nonsynonymous SNV	Ddx28:NM_028038:exon1:c.T71C:p.L24P	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.826173244	1	0.9201075	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	106092120	12A2p6	cell line	sgMsh2	106092120	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	216	143	28	0.195804196	exonic	Nfatc3	nonsynonymous SNV	"Nfatc3:NM_001368796:exon4:c.A1493T:p.Q498L,Nfatc3:NM_001368797:exon4:c.A1469T:p.Q490L,Nfatc3:NM_010901:exon4:c.A1493T:p.Q498L"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9939591	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	106131676	12A2p6	cell line	sgMsh2	106131676	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	145	101	13	0.128712871	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon14:c.T2052G:p.F684L	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999896	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr8	106131688	12A2p6	cell line	sgMsh2	106131688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	143	111	23	0.207207207	exonic	Esrp2	synonymous SNV	Esrp2:NM_176838:exon14:c.A2040G:p.L680L	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	GTA	synonymous	NA	NA	NA	NA
M6	chr8	106219993	12A2p6	cell line	sgMsh2	106219993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	178	77	11	0.142857143	exonic	Prmt7	nonsynonymous SNV	Prmt7:NM_145404:exon4:c.T206C:p.L69P	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	2	0.6447411	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	106242239	12A2p6	cell line	sgMsh2	106242239	T	-	Deletion	Mutect2;Vardict	2	0.044	150	71	0	0	exonic	Prmt7	frameshift deletion	Prmt7:NM_145404:exon10:c.1184delT:p.L395Rfs*13	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	NA	NA	CTG	frameshift	NA	NA	NA	-1
M6	chr8	106692630	12A2p6	cell line	sgMsh2	106692630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	233	17	3	0.176470588	exonic	Tango6	nonsynonymous SNV	Tango6:NM_173037:exon3:c.T808C:p.Y270H	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.21E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	107040978	12A2p6	cell line	sgMsh2	107040978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	152	94	16	0.170212766	exonic	Vps4a	nonsynonymous SNV	Vps4a:NM_126165:exon6:c.T568C:p.F190L	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999934	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
M6	chr8	107052821	12A2p6	cell line	sgMsh2	107052821	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	162	123	22	0.178861789	exonic	Cog8	nonsynonymous SNV	Cog8:NM_139229:exon3:c.T823A:p.F275I	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999966	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	107058147	12A2p6	cell line	sgMsh2	107058147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	163	177	39	0.220338983	exonic	Nip7	nonsynonymous SNV	Nip7:NM_025391:exon4:c.A383G:p.Y128C	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.831538005	1	0.9687469	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	107065463	12A2p6	cell line	sgMsh2	107065463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	84	3	0	0	exonic	Tmed6	nonsynonymous SNV	Tmed6:NM_025458:exon1:c.C149T:p.P50L	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.708148495	2	0.6891108	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	198	42	6	0.142857143	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GAG	synonymous	NA	NA	NA	NA
M6	chr8	108949466	12A2p6	cell line	sgMsh2	108949466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	86	41	11	0.268292683	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.A7147G:p.T2383A	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994869	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	157	87	5	0.057471264	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.34E-08	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M6	chr8	109803054	12A2p6	cell line	sgMsh2	109803054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	170	180	24	0.133333333	exonic	Ap1g1	synonymous SNV	"Ap1g1:NM_001301211:exon2:c.G105A:p.R35R,Ap1g1:NM_009677:exon2:c.G105A:p.R35R"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.9999907	GGT	synonymous	NA	NA	NA	NA
M6	chr8	110154658	12A2p6	cell line	sgMsh2	110154658	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	85	0	0	NA	exonic	Calb2	nonsynonymous SNV	"Calb2:NM_001368293:exon3:c.G256T:p.A86S,Calb2:NM_007586:exon3:c.G256T:p.A86S"	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.928103709	1	0.9957425	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr8	110222125	12A2p6	cell line	sgMsh2	110222125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	245	50	7	0.14	exonic	Cmtr2	nonsynonymous SNV	Cmtr2:NM_146215:exon2:c.T1066C:p.F356L	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.734972301	2	0.9768263	CTT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M6	chr8	110267353	12A2p6	cell line	sgMsh2	110267353	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	214	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon2:c.A18T:p.K6N	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9999959	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	110490782	12A2p6	cell line	sgMsh2	110490782	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	62	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon28:c.T4301A:p.I1434N	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	190	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	96	18	1	0.055555556	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9893469	TAC	synonymous	NA	NA	NA	NA
M6	chr8	110817587	12A2p6	cell line	sgMsh2	110817587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	184	172	14	0.081395349	exonic	Sf3b3	nonsynonymous SNV	Sf3b3:NM_133953:exon18:c.A2420G:p.Y807C	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9999983	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	111075417	12A2p6	cell line	sgMsh2	111075417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	44	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon5:c.T693C:p.C231C	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	3	1	1	0.9918357	CAC	synonymous	NA	NA	NA	NA
M6	chr8	111078787	12A2p6	cell line	sgMsh2	111078787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	85	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon3:c.T435C:p.A145A	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9994519	CAG	synonymous	NA	NA	NA	NA
M6	chr8	111102082	12A2p6	cell line	sgMsh2	111102082	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.182	80	13	1	0.076923077	exonic	Pdpr	synonymous SNV	Pdpr:NM_198308:exon2:c.G216A:p.E72E	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9985623	AGC	synonymous	GCAGG	10	GCAGGGCAGG	NA
M6	chr8	111124575	12A2p6	cell line	sgMsh2	111124575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	182	23	2	0.086956522	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon12:c.T1565C:p.V522A	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.9980508	GTC	nonsynonymous	TG	9	TGTGTGTGT	NA
M6	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	205	31	1	0.032258065	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.182401885	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	111504389	12A2p6	cell line	sgMsh2	111504389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	219	42	2	0.047619048	exonic	Wdr59	synonymous SNV	"Wdr59:NM_001170742:exon3:c.T186C:p.I62I,Wdr59:NM_001170743:exon3:c.T186C:p.I62I,Wdr59:NM_176923:exon3:c.T186C:p.I62I"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9988033	CAA	synonymous	NA	NA	NA	NA
M6	chr8	111504457	12A2p6	cell line	sgMsh2	111504457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	192	27	1	0.037037037	exonic	Wdr59	nonsynonymous SNV	"Wdr59:NM_001170742:exon3:c.T118C:p.Y40H,Wdr59:NM_001170743:exon3:c.T118C:p.Y40H,Wdr59:NM_176923:exon3:c.T118C:p.Y40H"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.788619915	1	0.7188836	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	111688682	12A2p6	cell line	sgMsh2	111688682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	103	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon5:c.A359C:p.D120A	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.885185619	1	0.9911947	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	155	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.482828519	2	0.9957546	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	111713461	12A2p6	cell line	sgMsh2	111713461	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	133	212	41	0.193396226	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A1900T:p.S634C,Bcar1:NM_009954:exon5:c.A1900T:p.S634C"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.590123746	2	0.9995178	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	111714373	12A2p6	cell line	sgMsh2	111714373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	87	128	19	0.1484375	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A988G:p.T330A,Bcar1:NM_009954:exon5:c.A988G:p.T330A"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9995197	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	112753904	12A2p6	cell line	sgMsh2	112753904	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	263	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon7:c.T982A:p.Y328N	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	2	0.7875817	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr8	113636188	12A2p6	cell line	sgMsh2	113636188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	47	21	2	0.095238095	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon1:c.T67C:p.F23L,Mon1b:NM_001048143:exon2:c.T67C:p.F23L"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9932937	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	113737642	12A2p6	cell line	sgMsh2	113737642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	211	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon15:c.A2183C:p.E728A	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	113775269	12A2p6	cell line	sgMsh2	113775269	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	141	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon5:c.C959T:p.T320I	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.799349437	1	0.8456306	TGT	nonsynonymous	NA	NA	NA	NA
M6	chr8	114712137	12A2p6	cell line	sgMsh2	114712137	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	143	12	0	0	exonic	Wwox	synonymous SNV	Wwox:NM_019573:exon8:c.C942T:p.R314R	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	GCG	synonymous	NA	NA	NA	NA
M6	chr8	116971476	12A2p6	cell line	sgMsh2	116971476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	140	0	0	NA	exonic	1700030J22Rik	synonymous SNV	"1700030J22Rik:NM_001357253:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357254:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357255:exon3:c.T570C:p.T190T,1700030J22Rik:NM_027103:exon3:c.T891C:p.T297T"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	CAG	synonymous	GTGG	9	GTGGGTGGG	NA
M6	chr8	117596440	12A2p6	cell line	sgMsh2	117596440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	88	6	2	0.333333333	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon20:c.A2233G:p.M745V	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.917374186	1	0.9948481	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	117605210	12A2p6	cell line	sgMsh2	117605210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	365	16	2	0.125	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon24:c.T2534C:p.L845P	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.783255153	2	0.6407698	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr8	117663826	12A2p6	cell line	sgMsh2	117663826	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	157	12	3	0.25	exonic	Sdr42e1	synonymous SNV	"Sdr42e1:NM_001357273:exon3:c.C75G:p.G25G,Sdr42e1:NM_028725:exon3:c.C75G:p.G25G,Sdr42e1:NM_001357272:exon4:c.C75G:p.G25G"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.874456096	1	0.996465	AGC	synonymous	NA	NA	NA	NA
M6	chr8	117758891	12A2p6	cell line	sgMsh2	117758891	A	-	Deletion	Strelka2;Vardict	2	0.125	168	3	1	0.333333333	exonic	Hsd17b2	frameshift deletion	Hsd17b2:NM_008290:exon5:c.1092delA:p.G367Vfs*10	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6	chr8	119533367	12A2p6	cell line	sgMsh2	119533367	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	80	162	31	0.191358025	exonic	Mbtps1	nonsynonymous SNV	"Mbtps1:NM_001167910:exon10:c.A1240G:p.S414G,Mbtps1:NM_019709:exon11:c.A1240G:p.S414G"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.488193281	2	0.9384842	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	121753638	12A2p6	cell line	sgMsh2	121753638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	84	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon2:c.A1054G:p.I352V	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.93346847	1	0.9961825	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	121796690	12A2p6	cell line	sgMsh2	121796690	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	89	64	6	0.09375	exonic	Klhdc4	synonymous SNV	Klhdc4:NM_145605:exon12:c.C1612A:p.R538R	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.756431347	1	6.31E-09	CGG	synonymous	NA	NA	NA	NA
M6	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	111	44	7	0.159090909	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9982462	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr8	122439655	12A2p6	cell line	sgMsh2	122439655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	139	70	8	0.114285714	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.A242G:p.Q81R	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.81007896	1	0.09933456	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	61	1	0	0	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9606847	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr8	122468690	12A2p6	cell line	sgMsh2	122468690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	157	58	10	0.172413793	exonic	Rnf166	nonsynonymous SNV	"Rnf166:NM_001033142:exon3:c.T349C:p.C117R,Rnf166:NM_001368370:exon3:c.T22C:p.C8R"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999953	CAG	nonsynonymous	CAGG	8	CAGGCAGG	NA
M6	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Vardict	2	0.06	87	92	5	0.054347826	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9975623	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	122622101	12A2p6	cell line	sgMsh2	122622101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	44	0	0	NA	exonic	Pabpn1l	synonymous SNV	Pabpn1l:NM_001007462:exon2:c.A267G:p.K89K	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.949562754	1	0.9829436	GTT	synonymous	NA	NA	NA	NA
M6	chr8	122634411	12A2p6	cell line	sgMsh2	122634411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	160	7	1	0.142857143	exonic	Cbfa2t3	nonsynonymous SNV	"Cbfa2t3:NM_177289:exon9:c.A1168G:p.T390A,Cbfa2t3:NM_001109873:exon10:c.A1246G:p.T416A,Cbfa2t3:NM_009824:exon10:c.A1351G:p.T451A"	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.68668945	2	0.9876612	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	122813653	12A2p6	cell line	sgMsh2	122813653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	147	36	5	0.138888889	exonic	Acsf3	nonsynonymous SNV	Acsf3:NM_144932:exon9:c.A1589G:p.D530G	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	0.9901237	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	122865142	12A2p6	cell line	sgMsh2	122865142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	84	0	0	NA	exonic	Cdh15	nonsynonymous SNV	Cdh15:NM_007662:exon11:c.C1765T:p.P589S	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9994145	GCC	nonsynonymous	TGCC	8	TGCCTGCC	NA
M6	chr8	122890651	12A2p6	cell line	sgMsh2	122890651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	120	93	12	0.129032258	exonic	Ankrd11	nonsynonymous SNV	Ankrd11:NM_001081379:exon9:c.T6398C:p.L2133P	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.600853268	2	0.9981185	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	123269307	12A2p6	cell line	sgMsh2	123269307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	149	30	8	0.266666667	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon40:c.A3966G:p.L1322L	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.622312314	2	0.9992348	GTA	synonymous	NA	NA	NA	NA
M6	chr8	123282666	12A2p6	cell line	sgMsh2	123282666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	284	15	1	0.066666667	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon29:c.T2786C:p.L929P	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.981751322	1	7.11E-09	CAG	nonsynonymous	TTCCAG	12	TTCCAGTTCCAG	NA
M6	chr8	123305856	12A2p6	cell line	sgMsh2	123305856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	123	17	2	0.117647059	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon11:c.T888C:p.P296P	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999241	TAG	synonymous	NA	NA	NA	NA
M6	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	154	3	0	0	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	4.68E-09	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M6	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Vardict	2	0.052	84	65	3	0.046153846	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9996932	CCC	nonsynonymous	NA	NA	NA	NA
M6	chr8	124025157	12A2p6	cell line	sgMsh2	124025157	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	188	41	7	0.170731707	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon3:c.C228A:p.N76K,Urb2:NM_001368414:exon3:c.C228A:p.N76K"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr8	124025166	12A2p6	cell line	sgMsh2	124025166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	190	45	9	0.2	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon3:c.T237C:p.H79H,Urb2:NM_001368414:exon3:c.T237C:p.H79H"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	ATA	synonymous	NA	NA	NA	NA
M6	chr8	124028714	12A2p6	cell line	sgMsh2	124028714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	172	57	10	0.175438596	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1159C:p.F387L,Urb2:NM_001368414:exon4:c.T1159C:p.F387L"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999983	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	252	71	3	0.042253521	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr8	125482101	12A2p6	cell line	sgMsh2	125482101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	131	0	0	NA	exonic	Sipa1l2	nonsynonymous SNV	"Sipa1l2:NM_001081337:exon2:c.A1567G:p.R523G,Sipa1l2:NM_001357372:exon4:c.A1567G:p.R523G"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.761796108	1	0.5152937	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr8	125671560	12A2p6	cell line	sgMsh2	125671560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	139	0	0	NA	exonic	Map10	nonsynonymous SNV	Map10:NM_028908:exon1:c.A1691G:p.D564G	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.616947552	2	0.9989057	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	83	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.9869207	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr8	126949307	12A2p6	cell line	sgMsh2	126949307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	124	133	13	0.097744361	exonic	Rbm34	synonymous SNV	"Rbm34:NM_001374800:exon10:c.A1197G:p.A399A,Rbm34:NM_172762:exon11:c.A1257G:p.A419A"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.922738948	1	0.9989579	CTG	synonymous	NA	NA	NA	NA
M6	chr8	127474550	12A2p6	cell line	sgMsh2	127474550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	140	27	9	0.333333333	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon21:c.A3303G:p.E1101E,Pard3:NM_001309391:exon22:c.A3348G:p.E1116E,Pard3:NM_001363431:exon22:c.A3258G:p.E1086E,Pard3:NM_001363432:exon22:c.A3354G:p.E1118E,Pard3:NM_033620:exon22:c.A3345G:p.E1115E"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAG	synonymous	NA	NA	NA	NA
M6	chr8	128497982	12A2p6	cell line	sgMsh2	128497982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	93	32	3	0.09375	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon14:c.A2204G:p.Y735C,Nrp1:NM_001358960:exon14:c.A2225G:p.Y742C,Nrp1:NM_008737:exon14:c.A2225G:p.Y742C"	8qE2	chr8-3154030-129138455	6	3	3	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9863609	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	3458787	12A2p6	cell line	sgMsh2	3458787	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.093	114	25	0	0	exonic	Cwf19l2	frameshift insertion	Cwf19l2:NM_027545:exon15:c.2236dupT:p.L747Ffs*3	9qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TCT	frameshift	T	5	TTTTT	1
M6	chr9	3634650	12A2p6	cell line	sgMsh2	3634650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	135	0	0	NA	exonic	Gucy1a2	synonymous SNV	Gucy1a2:NM_001033322:exon4:c.T693C:p.G231G	9qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	245	1	0	0	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr9	4308732	12A2p6	cell line	sgMsh2	4308732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	178	85	10	0.117647059	exonic;splicing	Aasdhppt;Aasdhppt	nonsynonymous SNV	Aasdhppt:NM_026276:exon2:c.T371C:p.V124A	9qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	4309405	12A2p6	cell line	sgMsh2	4309405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	49	52	9	0.173076923	exonic	Aasdhppt	nonsynonymous SNV	"Aasdhppt:NM_001326359:exon1:c.T32C:p.V11A,Aasdhppt:NM_026276:exon1:c.T32C:p.V11A"	9qA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	4384088	12A2p6	cell line	sgMsh2	4384088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	105	201	57	0.28358209	exonic	Msantd4	synonymous SNV	Msantd4:NM_145609:exon2:c.A408G:p.G136G	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998537	GAT	synonymous	NA	NA	NA	NA
M6	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	97	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	2	0.8979132	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	4664969	12A2p6	cell line	sgMsh2	4664969	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.201	78	0	0	NA	exonic	Gria4	frameshift insertion	"Gria4:NM_001113180:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_001113181:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_019691:exon4:c.285dupT:p.G96Wfs*3"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CCA	frameshift	A	5	AAAAA	1
M6	chr9	5303669	12A2p6	cell line	sgMsh2	5303669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	157	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon6:c.T754C:p.S252P	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	5348935	12A2p6	cell line	sgMsh2	5348935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	164	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon3:c.T296C:p.I99T	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.999997	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	169	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.295061873	3	0.999999	ATG	synonymous	GAT	8	GATGATGA	NA
M6	chr9	6983433	12A2p6	cell line	sgMsh2	6983433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	59	6	1	0.166666667	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon83:c.A12110G:p.N4037S	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	6992577	12A2p6	cell line	sgMsh2	6992577	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	48	13	4	0.307692308	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon82:c.T11983G:p.F3995V	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.960292277	1	0.9881506	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	7135090	12A2p6	cell line	sgMsh2	7135090	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	152	11	0	0	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon30:c.T4540G:p.L1514V	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999934	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	7142289	12A2p6	cell line	sgMsh2	7142289	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	104	10	1	0.1	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon25:c.C3655A:p.L1219I	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.697418972	2	0.8595031	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	184	272	11	0.040441176	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9999981	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	7455659	12A2p6	cell line	sgMsh2	7455659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	145	1	0	0	exonic	Mmp3	nonsynonymous SNV	Mmp3:NM_010809:exon10:c.T1409C:p.I470T	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9999445	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr9	7503275	12A2p6	cell line	sgMsh2	7503275	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	164	6	0	0	exonic	Mmp10	nonsynonymous SNV	Mmp10:NM_019471:exon2:c.C235G:p.L79V	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.547205655	2	0.9999911	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	8610048	12A2p6	cell line	sgMsh2	8610048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	174	0	0	NA	exonic	Trpc6	synonymous SNV	"Trpc6:NM_001282086:exon2:c.T516C:p.Y172Y,Trpc6:NM_001282087:exon2:c.T516C:p.Y172Y,Trpc6:NM_013838:exon2:c.T516C:p.Y172Y"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	ATG	synonymous	NA	NA	NA	NA
M6	chr9	9238774	12A2p6	cell line	sgMsh2	9238774	C	-	Deletion	Strelka2;Vardict	2	0.1765	17	12	2	0.166666667	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372564:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372565:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372566:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372567:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372568:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372569:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372570:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_027823:exon1:c.6delG:p.L3Cfs*37"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.946880374	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6	chr9	9673855	12A2p6	cell line	sgMsh2	9673855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	89	0	0	NA	exonic	Cntn5	synonymous SNV	"Cntn5:NM_001033359:exon18:c.C2241T:p.Y747Y,Cntn5:NM_001170787:exon22:c.C2856T:p.Y952Y"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995791	TGT	synonymous	NA	NA	NA	NA
M6	chr9	13782310	12A2p6	cell line	sgMsh2	13782310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	242	84	3	0.035714286	exonic	Mtmr2	synonymous SNV	"Mtmr2:NM_001373873:exon2:c.T114C:p.H38H,Mtmr2:NM_023858:exon2:c.T114C:p.H38H"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9999439	ATA	synonymous	NA	NA	NA	NA
M6	chr9	13810656	12A2p6	cell line	sgMsh2	13810656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	154	136	25	0.183823529	exonic	Cep57	synonymous SNV	"Cep57:NM_001310721:exon8:c.T1017C:p.T339T,Cep57:NM_026665:exon9:c.T1095C:p.T365T"	9qA1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	AAG	synonymous	NA	NA	NA	NA
M6	chr9	14786962	12A2p6	cell line	sgMsh2	14786962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	143	61	14	0.229508197	exonic	Mre11a	synonymous SNV	"Mre11a:NM_001310728:exon3:c.T105C:p.D35D,Mre11a:NM_018736:exon3:c.T105C:p.D35D"	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999881	ATA	synonymous	NA	NA	NA	NA
M6	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Vardict	2	0.047	131	42	2	0.047619048	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.252143782	3	0.9999995	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	15311987	12A2p6	cell line	sgMsh2	15311987	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	223	19	1	0.052631579	exonic	Taf1d	nonsynonymous SNV	Taf1d:NM_029248:exon7:c.T935C:p.V312A	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	15330553	12A2p6	cell line	sgMsh2	15330553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	98	19	3	0.157894737	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon17:c.A5476G:p.T1826A	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr9	15600919	12A2p6	cell line	sgMsh2	15600919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	122	0	0	NA	exonic	Deup1	nonsynonymous SNV	"Deup1:NM_001373919:exon5:c.A431G:p.K144R,Deup1:NM_001373920:exon5:c.A527G:p.K176R,Deup1:NM_001373917:exon6:c.A527G:p.K176R,Deup1:NM_001373921:exon6:c.A527G:p.K176R,Deup1:NM_181816:exon6:c.A527G:p.K176R,Deup1:NM_001373918:exon7:c.A464G:p.K155R"	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.520381848	2	0.9990429	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	15999264	12A2p6	cell line	sgMsh2	15999264	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	169	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.C5453A:p.T1818N	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	AGT	nonsynonymous	NA	NA	NA	NA
M6	chr9	16029910	12A2p6	cell line	sgMsh2	16029910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	118	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.T4096C:p.Y1366H	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr9	18312832	12A2p6	cell line	sgMsh2	18312832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	186	216	53	0.24537037	exonic	Chordc1	nonsynonymous SNV	Chordc1:NM_025844:exon11:c.A907T:p.T303S	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	18409431	12A2p6	cell line	sgMsh2	18409431	-	A	Insertion	Strelka2;Vardict	2	0.2375	80	0	0	NA	exonic	Ubtfl1	frameshift insertion	"Ubtfl1:NM_001360216:exon2:c.255dupA:p.T88Nfs*4,Ubtfl1:NM_001033793:exon3:c.255dupA:p.T88Nfs*4"	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
M6	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Vardict	2	0.06	145	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr9	18945178	12A2p6	cell line	sgMsh2	18945178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	188	0	0	NA	exonic	Olfr832	frameshift deletion	Olfr832:NM_001011824:exon1:c.529delT:p.C179Vfs*23	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr9	19360720	12A2p6	cell line	sgMsh2	19360720	A	G	SNV	Mutect2;Vardict	2	0.061	172	0	0	NA	exonic	Olfr846	nonsynonymous SNV	Olfr846:NM_146282:exon1:c.T634C:p.F212L	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.327250441	3	0.9999758	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	19375606	12A2p6	cell line	sgMsh2	19375606	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	313	0	0	NA	exonic	Olfr847	nonsynonymous SNV	Olfr847:NM_146525:exon1:c.A274G:p.I92V	9qA2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	163	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.209225692	3	1.24E-09	TAA	nonsynonymous	NA	NA	NA	NA
M6	chr9	19783379	12A2p6	cell line	sgMsh2	19783379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	384	0	0	NA	exonic	Olfr58	nonsynonymous SNV	Olfr58:NM_011001:exon2:c.T245C:p.L82P	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	19921049	12A2p6	cell line	sgMsh2	19921049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	exonic	Olfr77	nonsynonymous SNV	Olfr77:NM_146339:exon3:c.T839C:p.V280A	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.906644664	1	0.9991438	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	20101525	12A2p6	cell line	sgMsh2	20101525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	160	0	0	NA	exonic	Olfr868	synonymous SNV	Olfr868:NM_146559:exon2:c.T765C:p.Y255Y	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999961	ATG	synonymous	NA	NA	NA	NA
M6	chr9	20438356	12A2p6	cell line	sgMsh2	20438356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	133	36	7	0.194444444	exonic	Zfp26	nonsynonymous SNV	"Zfp26:NM_001357809:exon10:c.T911G:p.L304R,Zfp26:NM_011753:exon10:c.T911G:p.L304R"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999977	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	20878353	12A2p6	cell line	sgMsh2	20878353	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.189	22	0	0	NA	exonic	Angptl6	nonsynonymous SNV	Angptl6:NM_145154:exon2:c.T242G:p.L81R	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9659636	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	20922368	12A2p6	cell line	sgMsh2	20922368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	121	92	23	0.25	exonic	Dnmt1	synonymous SNV	"Dnmt1:NM_001199431:exon20:c.T1728C:p.D576D,Dnmt1:NM_001199432:exon20:c.T1371C:p.D457D,Dnmt1:NM_001199433:exon20:c.T1374C:p.D458D,Dnmt1:NM_001314011:exon20:c.T1749C:p.D583D,Dnmt1:NM_010066:exon20:c.T1725C:p.D575D"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CAT	synonymous	TCA	8	TCATCATC	NA
M6	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Vardict	2	0.051	108	29	2	0.068965517	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	0.9999741	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	21007720	12A2p6	cell line	sgMsh2	21007720	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	121	83	5	0.060240964	exonic	Mrpl4	synonymous SNV	"Mrpl4:NM_001357899:exon7:c.T660C:p.S220S,Mrpl4:NM_023167:exon7:c.T642C:p.S214S"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	2	0.9990795	GTT	synonymous	NA	NA	NA	NA
M6	chr9	21036526	12A2p6	cell line	sgMsh2	21036526	T	G	SNV	Mutect2;Strelka2	2	0.043	172	4	0	0	exonic	Icam5	nonsynonymous SNV	Icam5:NM_008319:exon8:c.T1719G:p.S573R	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.74E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	21036528	12A2p6	cell line	sgMsh2	21036528	T	G	SNV	Mutect2;Strelka2	2	0.043	172	4	0	0	exonic	Icam5	nonsynonymous SNV	Icam5:NM_008319:exon8:c.T1721G:p.F574C	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.74E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	21149856	12A2p6	cell line	sgMsh2	21149856	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	26	428	98	0.228971963	exonic	Cdc37	nonsynonymous SNV	"Cdc37:NM_001378796:exon1:c.T2G:p.M1R,Cdc37:NM_016742:exon1:c.T2G:p.M1R"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9736728	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	21233517	12A2p6	cell line	sgMsh2	21233517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	53	41	5	0.12195122	exonic	Keap1	nonsynonymous SNV	"Keap1:NM_016679:exon2:c.T1196C:p.M399T,Keap1:NM_001110305:exon3:c.T1196C:p.M399T,Keap1:NM_001110306:exon3:c.T1196C:p.M399T,Keap1:NM_001110307:exon3:c.T1196C:p.M399T"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9954785	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	21343176	12A2p6	cell line	sgMsh2	21343176	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	198	55	2	0.036363636	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon10:c.T746C:p.V249A,Slc44a2:NM_001359227:exon10:c.T746C:p.V249A,Slc44a2:NM_152808:exon10:c.T752C:p.V251A"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.25E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	21723828	12A2p6	cell line	sgMsh2	21723828	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	78	52	5	0.096153846	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon1:c.T51C:p.A17A,Ldlr:NM_001252659:exon1:c.T51C:p.A17A,Ldlr:NM_010700:exon1:c.T51C:p.A17A"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.6950971	CTG	synonymous	GCT	8	GCTGCTGC	NA
M6	chr9	21739689	12A2p6	cell line	sgMsh2	21739689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	59	142	27	0.190140845	exonic	Ldlr	nonsynonymous SNV	"Ldlr:NM_001252658:exon10:c.A1402G:p.I468V,Ldlr:NM_001252659:exon10:c.A1399G:p.I467V,Ldlr:NM_010700:exon10:c.A1402G:p.I468V"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9969536	CAT	nonsynonymous	CAT	8	CATCATCA	NA
M6	chr9	22058114	12A2p6	cell line	sgMsh2	22058114	A	G	SNV	Mutect2;Strelka2	2	0.23	26	5	0	0	exonic	Zfp653	synonymous SNV	"Zfp653:NM_001310759:exon4:c.T855C:p.T285T,Zfp653:NM_177318:exon4:c.T855C:p.T285T"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9736728	CAG	synonymous	NA	NA	NA	NA
M6	chr9	22339087	12A2p6	cell line	sgMsh2	22339087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	52	49	11	0.224489796	exonic	Anln	nonsynonymous SNV	Anln:NM_028390:exon21:c.T2876C:p.V959A	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9951712	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	22887892	12A2p6	cell line	sgMsh2	22887892	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	186	6	1	0.166666667	exonic	Bbs9	stoploss	"Bbs9:NM_001360258:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_181316:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_001360259:exon23:c.2657delA:p.*886delinsCLE*,Bbs9:NM_178415:exon23:c.2642delA:p.*881delinsCLE*"	9qA3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAG	nonsynonymous	NA	NA	NA	-1
M6	chr9	24625612	12A2p6	cell line	sgMsh2	24625612	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	174	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.C397A:p.P133T	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9999304	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr9	26768455	12A2p6	cell line	sgMsh2	26768455	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	137	0	0	NA	exonic	Glb1l2	stopgain	"Glb1l2:NM_001310768:exon12:c.C1179A:p.Y393X,Glb1l2:NM_153803:exon13:c.C1227A:p.Y409X"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	0.9785794	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr9	26844248	12A2p6	cell line	sgMsh2	26844248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	132	0	0	NA	exonic	Glb1l3	nonsynonymous SNV	Glb1l3:NM_001113323:exon9:c.T839C:p.M280T	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999754	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	27082519	12A2p6	cell line	sgMsh2	27082519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	137	24	9	0.375	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A674G:p.Y225C,Ncapd3:NM_178113:exon26:c.A3200G:p.Y1067C"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999823	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	27319526	12A2p6	cell line	sgMsh2	27319526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	128	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon7:c.A824G:p.D275G,Igsf9b:NM_001384263:exon7:c.A824G:p.D275G,Igsf9b:NM_001384264:exon7:c.A824G:p.D275G"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.997845606	1	0.9999649	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	27328503	12A2p6	cell line	sgMsh2	27328503	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	56	5	0	0	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001384264:exon13:c.C1655A:p.T552N,Igsf9b:NM_001326702:exon14:c.C1843A:p.P615T,Igsf9b:NM_001384263:exon14:c.C1831A:p.P611T"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.89055038	1	0.971609	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr9	27331757	12A2p6	cell line	sgMsh2	27331757	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	59	0	0	NA	exonic	Igsf9b	synonymous SNV	Igsf9b:NM_001326702:exon16:c.T2238C:p.T746T	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	3	0.583081	CTC	synonymous	NA	NA	NA	NA
M6	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	44	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9918357	TCC	nonsynonymous	NA	NA	NA	NA
M6	chr9	29179195	12A2p6	cell line	sgMsh2	29179195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	119	30	6	0.2	exonic	Ntm	nonsynonymous SNV	"Ntm:NM_001357601:exon2:c.A227G:p.Y76C,Ntm:NM_001357602:exon2:c.A227G:p.Y76C,Ntm:NM_001357593:exon3:c.A227G:p.Y76C,Ntm:NM_001357597:exon3:c.A227G:p.Y76C,Ntm:NM_001357598:exon3:c.A227G:p.Y76C,Ntm:NM_001357603:exon3:c.A155G:p.Y52C,Ntm:NM_172290:exon3:c.A227G:p.Y76C"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	102	42	3	0.071428571	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.370168531	3	0.9790755	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr9	31053521	12A2p6	cell line	sgMsh2	31053521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	196	57	3	0.052631579	exonic	Zbtb44	nonsynonymous SNV	"Zbtb44:NM_001115130:exon2:c.C226T:p.H76Y,Zbtb44:NM_172765:exon2:c.C226T:p.H76Y"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9999982	TCA	nonsynonymous	NA	NA	NA	NA
M6	chr9	31327436	12A2p6	cell line	sgMsh2	31327436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	87	8	4	0.5	exonic	Prdm10	nonsynonymous SNV	"Prdm10:NM_001368845:exon5:c.T623C:p.I208T,Prdm10:NM_001368846:exon5:c.T623C:p.I208T,Prdm10:NM_199315:exon6:c.T623C:p.I208T"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995197	ATA	nonsynonymous	ATAG	8	ATAGATAG	NA
M6	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	86	13	1	0.076923077	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.579394223	2	0.9895022	CGC	synonymous	NA	NA	NA	NA
M6	chr9	31426949	12A2p6	cell line	sgMsh2	31426949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	120	0	0	NA	exonic	Tmem45b	nonsynonymous SNV	Tmem45b:NM_144936:exon6:c.A733G:p.T245A	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999457	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	237	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	1.44E-09	TAG	synonymous	NA	NA	NA	NA
M6	chr9	32260136	12A2p6	cell line	sgMsh2	32260136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	225	0	0	NA	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon13:c.A4211G:p.Y1404C,Arhgap32:NM_001195632:exon22:c.A5258G:p.Y1753C,Arhgap32:NM_001370957:exon22:c.A5138G:p.Y1713C,Arhgap32:NM_001370958:exon23:c.A5180G:p.Y1727C"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	35214258	12A2p6	cell line	sgMsh2	35214258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	184	175	25	0.142857143	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon9:c.A1117G:p.M373V	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	36257396	12A2p6	cell line	sgMsh2	36257396	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.085	170	0	0	NA	exonic	Gm3867	frameshift deletion	Gm3867:NM_001361061:exon4:c.231delT:p.R78Vfs*21	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	186	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.14E-09	AGG	synonymous	NA	NA	NA	NA
M6	chr9	36863526	12A2p6	cell line	sgMsh2	36863526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	90	0	0	NA	exonic	Fez1	synonymous SNV	"Fez1:NM_001357610:exon5:c.G528A:p.Q176Q,Fez1:NM_001357611:exon5:c.G528A:p.Q176Q,Fez1:NM_001357613:exon5:c.G528A:p.Q176Q,Fez1:NM_001357614:exon5:c.G528A:p.Q176Q,Fez1:NM_183171:exon5:c.G528A:p.Q176Q,Fez1:NM_001357612:exon6:c.G528A:p.Q176Q"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	AGA	synonymous	NA	NA	NA	NA
M6	chr9	37255323	12A2p6	cell line	sgMsh2	37255323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	38	1	0	0	exonic	Slc37a2	nonsynonymous SNV	"Slc37a2:NM_001145960:exon1:c.T35C:p.L12P,Slc37a2:NM_020258:exon1:c.T35C:p.L12P"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9879123	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	37381811	12A2p6	cell line	sgMsh2	37381811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	94	0	0	NA	exonic	Hepacam	nonsynonymous SNV	Hepacam:NM_175189:exon3:c.A697G:p.I233V	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996975	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	37522884	12A2p6	cell line	sgMsh2	37522884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	82	19	4	0.210526316	exonic	Msantd2	nonsynonymous SNV	Msantd2:NM_146222:exon4:c.T1022C:p.L341P	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9993318	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	124	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999583	TAT	synonymous	NA	NA	NA	NA
M6	chr9	37804586	12A2p6	cell line	sgMsh2	37804586	T	C	SNV	Mutect2;MuSe;Vardict	3	0.082	320	0	0	NA	exonic	Olfr876	nonsynonymous SNV	Olfr876:NM_146883:exon1:c.T674C:p.L225P	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.9680854	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	37855276	12A2p6	cell line	sgMsh2	37855276	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.24	158	0	0	NA	exonic	Olfr877	frameshift insertion	Olfr877:NM_146417:exon1:c.458dupT:p.G155Wfs*16	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	AGT	frameshift	ATGGG	11	ATGGGATGGGA	1
M6	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	245	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	1.50E-09	GTA	synonymous	NA	NA	NA	NA
M6	chr9	38061932	12A2p6	cell line	sgMsh2	38061932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	286	0	0	NA	exonic	Olfr885	nonsynonymous SNV	Olfr885:NM_001011739:exon1:c.T611G:p.V204G	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.94E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	187	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.20386093	3	1.01E-09	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr9	38116625	12A2p6	cell line	sgMsh2	38116625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	207	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T828C:p.Y276Y	9qA4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATA	synonymous	NA	NA	NA	NA
M6	chr9	38179964	12A2p6	cell line	sgMsh2	38179964	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	91	0	0	NA	exonic	Olfr891	synonymous SNV	Olfr891:NM_146478:exon1:c.C858T:p.P286P	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9996312	AGG	synonymous	TAAA	8	TAAATAAA	NA
M6	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	245	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.51E-08	TTT	synonymous	NA	NA	NA	NA
M6	chr9	38539211	12A2p6	cell line	sgMsh2	38539211	T	-	Deletion	Mutect2;Vardict	2	0.028	462	0	0	NA	exonic	Olfr910	frameshift deletion	Olfr910:NM_146811:exon2:c.315delT:p.F107Lfs*8	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.150213317	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6	chr9	38698231	12A2p6	cell line	sgMsh2	38698231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	220	0	0	NA	exonic	Olfr919	nonsynonymous SNV	Olfr919:NM_146440:exon1:c.T146C:p.M49T	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	38728677	12A2p6	cell line	sgMsh2	38728677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	191	82	25	0.304878049	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon10:c.T1220C:p.V407A,Vwa5a:NM_172767:exon11:c.T1220C:p.V407A"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999995	GTT	nonsynonymous	AAGTT	12	AAGTTAAGTTAA	NA
M6	chr9	38734738	12A2p6	cell line	sgMsh2	38734738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	154	48	1	0.020833333	exonic	Vwa5a	synonymous SNV	"Vwa5a:NM_001145957:exon12:c.T1401C:p.D467D,Vwa5a:NM_172767:exon13:c.T1401C:p.D467D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.579394223	2	0.9999383	ATA	synonymous	NA	NA	NA	NA
M6	chr9	38741168	12A2p6	cell line	sgMsh2	38741168	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.118	39	69	6	0.086956522	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon18:c.A2246G:p.K749R,Vwa5a:NM_172767:exon19:c.A2246G:p.K749R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.633041836	2	0.006335467	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	38775660	12A2p6	cell line	sgMsh2	38775660	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	158	0	0	NA	exonic	Olfr921	nonsynonymous SNV	Olfr921:NM_146782:exon3:c.C404T:p.A135V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999956	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr9	38775841	12A2p6	cell line	sgMsh2	38775841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	203	0	0	NA	exonic	Olfr921	synonymous SNV	Olfr921:NM_146782:exon3:c.T585C:p.N195N	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	ATG	synonymous	NA	NA	NA	NA
M6	chr9	38828631	12A2p6	cell line	sgMsh2	38828631	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	78	0	0	NA	exonic	Olfr923	synonymous SNV	Olfr923:NM_146816:exon1:c.A939G:p.R313R	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.780914	GAA	synonymous	NA	NA	NA	NA
M6	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	233	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	1.00E-09	GCA	nonsynonymous	NA	NA	NA	NA
M6	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2	2	0.043	263	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.230684737	3	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	38877830	12A2p6	cell line	sgMsh2	38877830	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	396	0	0	NA	exonic	Olfr926	nonsynonymous SNV	Olfr926:NM_146815:exon1:c.T653C:p.I218T	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	38994685	12A2p6	cell line	sgMsh2	38994685	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	199	0	0	NA	exonic	Olfr935	nonsynonymous SNV	Olfr935:NM_146746:exon1:c.T749G:p.V250G	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	263	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	1.11E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	189	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.28433235	3	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M6	chr9	39184300	12A2p6	cell line	sgMsh2	39184300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	272	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.A121G:p.T41A	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	3.36E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	39218204	12A2p6	cell line	sgMsh2	39218204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	174	0	0	NA	exonic	Olfr944	synonymous SNV	Olfr944:NM_146507:exon1:c.A846G:p.V282V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999985	TAC	synonymous	NA	NA	NA	NA
M6	chr9	39238389	12A2p6	cell line	sgMsh2	39238389	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	exonic	Olfr1537	nonsynonymous SNV	Olfr1537:NM_207665:exon1:c.T43G:p.F15V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.02E-09	AAC	nonsynonymous	AAG	8	AAGAAGAA	NA
M6	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.536	229	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	4.15E-08	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39470406	12A2p6	cell line	sgMsh2	39470406	A	G	SNV	Mutect2;MuSe;Vardict	3	0.051	372	0	0	NA	exonic	Olfr955	nonsynonymous SNV	Olfr955:NM_207141:exon1:c.T319C:p.F107L	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.00E-09	AAA	nonsynonymous	CAA	9	CAACAACAA	NA
M6	chr9	39470583	12A2p6	cell line	sgMsh2	39470583	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	261	0	0	NA	exonic	Olfr955	nonsynonymous SNV	Olfr955:NM_207141:exon1:c.T142G:p.L48V	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	5.89E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	39484543	12A2p6	cell line	sgMsh2	39484543	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	209	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A709T:p.R237W	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39510911	12A2p6	cell line	sgMsh2	39510911	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	250	0	0	NA	exonic	Olfr957	nonsynonymous SNV	Olfr957:NM_146745:exon1:c.C808A:p.Q270K	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.11E-08	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39511354	12A2p6	cell line	sgMsh2	39511354	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	170	0	0	NA	exonic	Olfr957	nonsynonymous SNV	Olfr957:NM_146745:exon1:c.G365A:p.R122H	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.166307601	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	252	2	0	0	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1	CTG	synonymous	NA	NA	NA	NA
M6	chr9	39596639	12A2p6	cell line	sgMsh2	39596639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	155	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon11:c.T1200C:p.T400T,AW551984:NM_001359951:exon11:c.T1200C:p.T400T,AW551984:NM_178737:exon11:c.T1200C:p.T400T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.472098997	2	0.9880628	AAG	synonymous	NA	NA	NA	NA
M6	chr9	39719434	12A2p6	cell line	sgMsh2	39719434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	299	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T206C:p.I69T	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.40E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	39750389	12A2p6	cell line	sgMsh2	39750389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	132	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.T2C:p.M1T	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999754	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	253	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.273602828	3	1.05E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	39772775	12A2p6	cell line	sgMsh2	39772775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	162	0	0	NA	exonic	Olfr968	synonymous SNV	Olfr968:NM_146612:exon1:c.A24G:p.G8G	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.9973255	CTC	synonymous	NA	NA	NA	NA
M6	chr9	39795557	12A2p6	cell line	sgMsh2	39795557	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	296	0	0	NA	exonic	Olfr969	frameshift deletion	Olfr969:NM_146826:exon1:c.181delT:p.L63Sfs*20	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chr9	39873441	12A2p6	cell line	sgMsh2	39873441	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	307	0	0	NA	exonic	Olfr972	synonymous SNV	Olfr972:NM_146610:exon1:c.A165T:p.L55L	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	1.23E-09	TAC	synonymous	AC	8	ACACACAC	NA
M6	chr9	39873961	12A2p6	cell line	sgMsh2	39873961	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	349	0	0	NA	exonic	Olfr972	frameshift deletion	Olfr972:NM_146610:exon1:c.685delA:p.K229Nfs*56	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6	chr9	40333499	12A2p6	cell line	sgMsh2	40333499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	107	3	0	0	exonic	Gramd1b	synonymous SNV	"Gramd1b:NM_001357618:exon2:c.T180C:p.G60G,Gramd1b:NM_001357619:exon2:c.T207C:p.G69G,Gramd1b:NM_001357620:exon2:c.T180C:p.G60G,Gramd1b:NM_001357621:exon2:c.T180C:p.G60G,Gramd1b:NM_001357623:exon2:c.T207C:p.G69G,Gramd1b:NM_001357617:exon3:c.T261C:p.G87G,Gramd1b:NM_172768:exon3:c.T612C:p.G204G"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CAC	synonymous	NA	NA	NA	NA
M6	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	116	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.391627577	3	0.9380896	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M6	chr9	40978194	12A2p6	cell line	sgMsh2	40978194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	136	0	0	NA	exonic	Crtam	nonsynonymous SNV	"Crtam:NM_001281954:exon8:c.T884C:p.L295P,Crtam:NM_019465:exon8:c.T881C:p.L294P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999811	CAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	42002631	12A2p6	cell line	sgMsh2	42002631	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	101	11	0	0	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon24:c.A2999G:p.N1000S,Sorl1:NM_011436:exon29:c.A4001G:p.N1334S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.423816145	3	6.68E-06	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	156	82	3	0.036585366	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.654500882	2	0.9973036	CAG	synonymous	NA	NA	NA	NA
M6	chr9	44106252	12A2p6	cell line	sgMsh2	44106252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	88	0	0	NA	exonic	Mfrp	nonsynonymous SNV	"Mfrp:NM_001190314:exon13:c.A1522G:p.S508G,Mfrp:NM_147126:exon13:c.A1540G:p.S514G"	9qA5.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	44250827	12A2p6	cell line	sgMsh2	44250827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	99	0	0	NA	exonic	Pdzd3	nonsynonymous SNV	Pdzd3:NM_133226:exon3:c.T74C:p.I25T	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.767160869	1	0.6653269	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	44263821	12A2p6	cell line	sgMsh2	44263821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	58	1	1	1	exonic	Nlrx1	synonymous SNV	"Nlrx1:NM_001163742:exon5:c.T657C:p.R219R,Nlrx1:NM_001163743:exon5:c.T657C:p.R219R,Nlrx1:NM_178420:exon5:c.T657C:p.R219R"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.863726573	1	9.75E-09	AAC	synonymous	NA	NA	NA	NA
M6	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	37	43	4	0.093023256	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9870974	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	44711013	12A2p6	cell line	sgMsh2	44711013	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	50	55	3	0.054545455	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon9:c.A2304G:p.R768R	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.536476132	2	0.8877861	CTC	synonymous	GCTC	8	GCTCGCTC	NA
M6	chr9	44743959	12A2p6	cell line	sgMsh2	44743959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	441	110	0.249433107	exonic	Arcn1	nonsynonymous SNV	Arcn1:NM_145985:exon10:c.A1504G:p.T502A	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997518	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	44810718	12A2p6	cell line	sgMsh2	44810718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	138	29	2	0.068965517	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon33:c.T11329C:p.F3777L	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.429180906	2	0.5362464	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	44814689	12A2p6	cell line	sgMsh2	44814689	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	88	51	3	0.058823529	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon30:c.C10939T:p.L3647F	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.7885336	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	44823338	12A2p6	cell line	sgMsh2	44823338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	193	33	5	0.151515152	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6206G:p.Y2069C	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr9	45183178	12A2p6	cell line	sgMsh2	45183178	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	101	0	0	NA	exonic	Tmprss4	nonsynonymous SNV	"Tmprss4:NM_001364528:exon5:c.G14T:p.S5I,Tmprss4:NM_145403:exon5:c.G434T:p.S145I"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998095	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	45255890	12A2p6	cell line	sgMsh2	45255890	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	147	0	0	NA	exonic	Il10ra	synonymous SNV	"Il10ra:NM_001324486:exon7:c.A1362G:p.P454P,Il10ra:NM_008348:exon7:c.A1368G:p.P456P"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1.73E-09	CTG	synonymous	NA	NA	NA	NA
M6	chr9	45266583	12A2p6	cell line	sgMsh2	45266583	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	118	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon3:c.G242A:p.C81Y,Il10ra:NM_008348:exon3:c.G248A:p.C83Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.337979963	3	0.9987924	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr9	45916032	12A2p6	cell line	sgMsh2	45916032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	79	20	8	0.4	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon9:c.T1096C:p.C366R,Pcsk7:NM_008794:exon9:c.T1096C:p.C366R"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9991854	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	45944380	12A2p6	cell line	sgMsh2	45944380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	60	82	14	0.170731707	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_172257:exon17:c.A1600G:p.N534D,Sidt2:NM_001289668:exon18:c.A1663G:p.N555D,Sidt2:NM_001359653:exon18:c.A1612G:p.N538D"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9971478	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	45947872	12A2p6	cell line	sgMsh2	45947872	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	76	129	12	0.093023256	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_001289668:exon10:c.T979A:p.L327M,Sidt2:NM_001359653:exon10:c.T979A:p.L327M,Sidt2:NM_172257:exon10:c.T979A:p.L327M"	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	46283050	12A2p6	cell line	sgMsh2	46283050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	62	9	0	0	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon1:c.T20G:p.L7R	9qA5.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.659865643	2	0.7497276	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	49037852	12A2p6	cell line	sgMsh2	49037852	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	92	24	1	0.041666667	exonic	Usp28	nonsynonymous SNV	"Usp28:NM_175482:exon22:c.G2745T:p.K915N,Usp28:NM_001359739:exon23:c.G2841T:p.K947N"	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9942366	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	49268648	12A2p6	cell line	sgMsh2	49268648	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	126	0	0	NA	exonic	Gm4894	nonsynonymous SNV	Gm4894:NM_177701:exon2:c.A77T:p.E26V	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999635	GAA	nonsynonymous	NA	NA	NA	NA
M6	chr9	50740565	12A2p6	cell line	sgMsh2	50740565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	168	87	21	0.24137931	exonic	2310030G06Rik	nonsynonymous SNV	2310030G06Rik:NM_025865:exon4:c.A320G:p.Y107C	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999977	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr9	50862464	12A2p6	cell line	sgMsh2	50862464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	164	45	13	0.288888889	exonic	Ppp2r1b	nonsynonymous SNV	"Ppp2r1b:NM_001034085:exon5:c.T638C:p.V213A,Ppp2r1b:NM_001286553:exon5:c.T638C:p.V213A,Ppp2r1b:NM_028614:exon5:c.T638C:p.V213A"	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	51943627	12A2p6	cell line	sgMsh2	51943627	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	118	86	12	0.139534884	exonic	Fdx1	frameshift deletion	Fdx1:NM_007996:exon4:c.475delT:p.C159Vfs*1	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	143	9	1	0.111111111	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	3	0.9751101	TTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	53425655	12A2p6	cell line	sgMsh2	53425655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	214	3	2	0.666666667	exonic	4930550C14Rik	synonymous SNV	"4930550C14Rik:NM_001376945:exon5:c.T258C:p.D86D,4930550C14Rik:NM_001376943:exon7:c.T693C:p.D231D,4930550C14Rik:NM_001376944:exon7:c.T693C:p.D231D,4930550C14Rik:NM_029247:exon7:c.T693C:p.D231D"	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M6	chr9	53500806	12A2p6	cell line	sgMsh2	53500806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	149	28	5	0.178571429	exonic	Atm	synonymous SNV	Atm:NM_007499:exon20:c.A2949G:p.R983R	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999992	GTC	synonymous	NA	NA	NA	NA
M6	chr9	53563665	12A2p6	cell line	sgMsh2	53563665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	109	59	17	0.288135593	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon13:c.A2756G:p.N919S	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998877	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	53570988	12A2p6	cell line	sgMsh2	53570988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	109	45	1	0.022222222	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon17:c.T3995G:p.L1332R	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	2	0.5549521	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	54446743	12A2p6	cell line	sgMsh2	54446743	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	220	0	0	NA	exonic	Dmxl2	nonsynonymous SNV	Dmxl2:NM_172771:exon12:c.G1940A:p.G647D	9qA5.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.321885679	3	0.9999993	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr9	56147420	12A2p6	cell line	sgMsh2	56147420	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	88	178	38	0.213483146	exonic	Tspan3	synonymous SNV	Tspan3:NM_019793:exon2:c.T222A:p.A74A	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	TAG	synonymous	NA	NA	NA	NA
M6	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	823	70	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.187766646	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	140	60	21	0.35	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M6	chr9	56489931	12A2p6	cell line	sgMsh2	56489931	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	119	64	11	0.171875	exonic	Hmg20a	synonymous SNV	Hmg20a:NM_025812:exon9:c.A1014C:p.R338R	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999942	GAG	synonymous	NA	NA	NA	NA
M6	chr9	56885911	12A2p6	cell line	sgMsh2	56885911	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	100	2	0	0	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.A929C:p.N310T	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.332615202	3	0.9978414	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	56886067	12A2p6	cell line	sgMsh2	56886067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	63	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.A1085T:p.N362I	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	56918565	12A2p6	cell line	sgMsh2	56918565	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	54	37	9	0.243243243	exonic	Snx33	synonymous SNV	Snx33:NM_175483:exon2:c.C1611A:p.R537R	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	GGC	synonymous	NA	NA	NA	NA
M6	chr9	56982712	12A2p6	cell line	sgMsh2	56982712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	54	25	6	0.24	exonic	Snupn	synonymous SNV	Snupn:NM_178374:exon9:c.T816C:p.S272S	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	GTA	synonymous	NA	NA	NA	NA
M6	chr9	57096822	12A2p6	cell line	sgMsh2	57096822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	131	106	31	0.29245283	exonic	Sin3a	nonsynonymous SNV	"Sin3a:NM_001110350:exon6:c.T857C:p.V286A,Sin3a:NM_001357754:exon6:c.T857C:p.V286A,Sin3a:NM_001110351:exon7:c.T857C:p.V286A,Sin3a:NM_011378:exon7:c.T857C:p.V286A"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999737	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	57592934	12A2p6	cell line	sgMsh2	57592934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	80	20	4	0.2	exonic	Ulk3	nonsynonymous SNV	Ulk3:NM_027895:exon7:c.A812G:p.D271G	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	57612601	12A2p6	cell line	sgMsh2	57612601	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	115	0	0	NA	exonic	Lman1l	nonsynonymous SNV	Lman1l:NM_199222:exon7:c.C752T:p.T251I	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.64913612	2	0.9831903	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr9	57629290	12A2p6	cell line	sgMsh2	57629290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	40	175	50	0.285714286	exonic	Csk	nonsynonymous SNV	"Csk:NM_007783:exon6:c.A526G:p.T176A,Csk:NM_001304761:exon8:c.A526G:p.T176A"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9893925	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	117	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.24141426	3	0.9999989	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Vardict	2	0.072	139	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.386262815	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6	chr9	58908457	12A2p6	cell line	sgMsh2	58908457	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	83	157	11	0.070063694	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon16:c.A2534G:p.N845S,Neo1:NM_008684:exon16:c.A2534G:p.N845S"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7871164	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	58921767	12A2p6	cell line	sgMsh2	58921767	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	114	149	14	0.093959732	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon10:c.G1848T:p.Q616H,Neo1:NM_008684:exon10:c.G1848T:p.Q616H"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999193	CCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Vardict	2	0.113	124	1659	156	0.09403255	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.9982091	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr9	59868201	12A2p6	cell line	sgMsh2	59868201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	208	34	7	0.205882353	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon23:c.A3094G:p.R1032G	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999998	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	62060180	12A2p6	cell line	sgMsh2	62060180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	120	47	2	0.042553191	exonic	Glce	nonsynonymous SNV	"Glce:NM_001368304:exon4:c.T1688C:p.L563P,Glce:NM_033320:exon5:c.T1688C:p.L563P"	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	2	0.9456889	GAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	62282046	12A2p6	cell line	sgMsh2	62282046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	80	0	0	NA	exonic	Spesp1	nonsynonymous SNV	Spesp1:NM_025721:exon1:c.T17C:p.L6P	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.9710218	1	0.9983397	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	62882039	12A2p6	cell line	sgMsh2	62882039	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	69	31	10	0.322580645	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.G1885T:p.V629L	9qB	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9984242	ACA	nonsynonymous	NA	NA	NA	NA
M6	chr9	64122225	12A2p6	cell line	sgMsh2	64122225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	113	0	0	NA	exonic	Lctl	synonymous SNV	Lctl:NM_145835:exon6:c.T597C:p.S199S	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9988709	GTG	synonymous	NA	NA	NA	NA
M6	chr9	64132809	12A2p6	cell line	sgMsh2	64132809	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	107	0	0	NA	exonic	Lctl	nonsynonymous SNV	Lctl:NM_145835:exon11:c.T1201C:p.Y401H	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	0.7546442	GTA	nonsynonymous	NA	NA	NA	NA
M6	chr9	64212673	12A2p6	cell line	sgMsh2	64212673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	76	161	27	0.167701863	exonic	Map2k1	nonsynonymous SNV	Map2k1:NM_008927:exon3:c.G349T:p.V117L	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	ACC	nonsynonymous	NA	NA	NA	NA
M6	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	185	42	2	0.047619048	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.289697112	3	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	66372540	12A2p6	cell line	sgMsh2	66372540	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	183	14	2	0.142857143	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon2:c.T729C:p.G243G	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.343344725	3	0.9999187	GTC	synonymous	NA	NA	NA	NA
M6	chr9	66386829	12A2p6	cell line	sgMsh2	66386829	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	164	22	0	0	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon5:c.T1452C:p.D484D	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	1.09E-08	ATG	synonymous	NA	NA	NA	NA
M6	chr9	66445540	12A2p6	cell line	sgMsh2	66445540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	154	28	3	0.107142857	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon35:c.A6307G:p.T2103A	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	TAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	67830813	12A2p6	cell line	sgMsh2	67830813	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	22	0	0	NA	exonic	C2cd4a	nonsynonymous SNV	C2cd4a:NM_001163143:exon2:c.G947A:p.S316N	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9659636	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	60	21	2	0.095238095	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.751066585	1	0.6979668	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	69467368	12A2p6	cell line	sgMsh2	69467368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	159	3372	1193	0.353795967	exonic	Anxa2	synonymous SNV	Anxa2:NM_007585:exon3:c.T126C:p.I42I	9qC	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999959	TTG	synonymous	NA	NA	NA	NA
M6	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	121	126	49	0.388888889	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999492	GCT	synonymous	NA	NA	NA	NA
M6	chr9	70419008	12A2p6	cell line	sgMsh2	70419008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	183	72	17	0.236111111	exonic	Ccnb2	nonsynonymous SNV	Ccnb2:NM_007630:exon2:c.T146C:p.V49A	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.976386561	1	0.9999964	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	70580236	12A2p6	cell line	sgMsh2	70580236	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	75	69	9	0.130434783	exonic	Sltm	synonymous SNV	"Sltm:NM_001357911:exon12:c.T1323C:p.D441D,Sltm:NM_025690:exon12:c.T1551C:p.D517D,Sltm:NM_026337:exon12:c.T1497C:p.D499D"	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.450639951	2	0.682401	ATA	synonymous	NA	NA	NA	NA
M6	chr9	71716549	12A2p6	cell line	sgMsh2	71716549	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	62	225	48	0.213333333	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon6:c.A1901T:p.Q634L,Cgnl1:NM_026599:exon6:c.A1901T:p.Q634L"	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9975	CTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	71725437	12A2p6	cell line	sgMsh2	71725437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	174	161	5	0.031055901	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A631G:p.K211E,Cgnl1:NM_026599:exon2:c.A631G:p.K211E"	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.466734235	2	0.9885556	TTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	72617209	12A2p6	cell line	sgMsh2	72617209	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	89	47	8	0.170212766	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A1680C:p.K560N	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.847632289	1	0.9614197	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	72694422	12A2p6	cell line	sgMsh2	72694422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	167	1	0	0	exonic	Nedd4	synonymous SNV	Nedd4:NM_001357998:exon1:c.T984C:p.C328C	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9999976	GTG	synonymous	TG	8	TGTGTGTG	NA
M6	chr9	73012712	12A2p6	cell line	sgMsh2	73012712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	57	141	44	0.312056738	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286544:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286545:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286546:exon8:c.A1308C:p.K436N,Ccpg1:NM_028181:exon8:c.A1608C:p.K536N,Ccpg1:NM_001359295:exon9:c.A1704C:p.K568N,Ccpg1:NM_001359296:exon9:c.A1704C:p.K568N"	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.879820857	1	0.9663218	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	73017490	12A2p6	cell line	sgMsh2	73017490	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	107	36	9	0.25	exonic	Pigb	synonymous SNV	Pigb:NM_018889:exon11:c.A1386T:p.A462A	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	CTG	synonymous	NA	NA	NA	NA
M6	chr9	73931436	12A2p6	cell line	sgMsh2	73931436	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	218	5	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.C2132A:p.T711N	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	GGT	nonsynonymous	NA	NA	NA	NA
M6	chr9	73931834	12A2p6	cell line	sgMsh2	73931834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	98	2	0	0	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.T1734C:p.L578L	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	AAA	synonymous	NA	NA	NA	NA
M6	chr9	75006449	12A2p6	cell line	sgMsh2	75006449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	125	14	0	0	exonic	Fam214a	synonymous SNV	"Fam214a:NM_153584:exon3:c.A384G:p.A128A,Fam214a:NM_001113283:exon4:c.A363G:p.A121A,Fam214a:NM_001359816:exon4:c.A363G:p.A121A"	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999961	CAC	synonymous	NA	NA	NA	NA
M6	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	173	37	1	0.027027027	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	4.74E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	76952029	12A2p6	cell line	sgMsh2	76952029	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	115	2	0	0	exonic	Tinag	frameshift deletion	Tinag:NM_012033:exon11:c.1296delT:p.I432Mfs*21	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6	chr9	77032432	12A2p6	cell line	sgMsh2	77032432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	147	2	0	0	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon2:c.A410G:p.N137S	9qD	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	GTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	78059630	12A2p6	cell line	sgMsh2	78059630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	123	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon3:c.A130G:p.I44V	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999555	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	78098394	12A2p6	cell line	sgMsh2	78098394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	31	3	0.096774194	exonic	Fbxo9	nonsynonymous SNV	"Fbxo9:NM_001081490:exon5:c.A359G:p.K120R,Fbxo9:NM_023605:exon5:c.A356G:p.K119R"	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999997	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	149	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.193131408	3	1.34E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	146	26292	7066	0.268750951	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999903	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	106	2	0	0	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.439910429	2	0.6595405	GTT	synonymous	NA	NA	NA	NA
M6	chr9	79818911	12A2p6	cell line	sgMsh2	79818911	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	110	0	0	NA	exonic	Filip1	nonsynonymous SNV	"Filip1:NM_001357354:exon2:c.G1681A:p.A561T,Filip1:NM_001081243:exon5:c.G2425A:p.A809T,Filip1:NM_001357352:exon5:c.G2470A:p.A824T,Filip1:NM_001357353:exon5:c.G2425A:p.A809T"	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.311156157	3	0.9997137	GCC	nonsynonymous	NA	NA	NA	NA
M6	chr9	82025664	12A2p6	cell line	sgMsh2	82025664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	140	10	1	0.1	exonic	Mei4	nonsynonymous SNV	"Mei4:NM_001357479:exon4:c.A749G:p.K250R,Mei4:NM_175213:exon5:c.A1046G:p.K349R"	9qE1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999855	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	82876063	12A2p6	cell line	sgMsh2	82876063	C	T	SNV	Mutect2;Vardict	2	0.025	181	80	2	0.025	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon38:c.G4576A:p.A1526T	9qE2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.134119033	3	1.00E-09	GCT	nonsynonymous	TGA	8	TGATGATG	NA
M6	chr9	83847153	12A2p6	cell line	sgMsh2	83847153	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	138	17	5	0.294117647	exonic	Ttk	nonsynonymous SNV	"Ttk:NM_001110265:exon10:c.T988A:p.L330M,Ttk:NM_001284272:exon10:c.T988A:p.L330M,Ttk:NM_009445:exon10:c.T988A:p.L330M"	9qE2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999835	TTT	nonsynonymous	CTAT	8	CTATCTAT	NA
M6	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.4	25	137	10	0.072992701	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M6	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	116	86	2	0.023255814	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9936745	TAG	synonymous	NA	NA	NA	NA
M6	chr9	86559478	12A2p6	cell line	sgMsh2	86559478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	113	90	20	0.222222222	exonic	Pgm3	synonymous SNV	"Pgm3:NM_001163746:exon9:c.T1065C:p.H355H,Pgm3:NM_028352:exon9:c.T1065C:p.H355H"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	AAT	synonymous	NA	NA	NA	NA
M6	chr9	87707833	12A2p6	cell line	sgMsh2	87707833	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	0	0	NA	exonic	Tbx18	nonsynonymous SNV	Tbx18:NM_023814:exon7:c.T1051A:p.Y351N	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999938	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	88462956	12A2p6	cell line	sgMsh2	88462956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	179	372	61	0.163978495	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.A713C:p.K238T,Syncrip:NM_001284328:exon8:c.A1007C:p.K336T,Syncrip:NM_019666:exon8:c.A1007C:p.K336T,Syncrip:NM_019796:exon8:c.A1007C:p.K336T"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999989	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	88480612	12A2p6	cell line	sgMsh2	88480612	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	88	20	9	0.45	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001284328:exon2:c.G142A:p.V48I,Syncrip:NM_019666:exon2:c.G142A:p.V48I,Syncrip:NM_019796:exon2:c.G142A:p.V48I"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9995504	ACG	nonsynonymous	NA	NA	NA	NA
M6	chr9	88582205	12A2p6	cell line	sgMsh2	88582205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	196	0	0	NA	exonic	Trim43a	synonymous SNV	"Trim43a:NM_001034906:exon2:c.T168C:p.C56C,Trim43a:NM_001357687:exon2:c.T168C:p.C56C"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.987116084	1	0.9999992	GTA	synonymous	NA	NA	NA	NA
M6	chr9	89602722	12A2p6	cell line	sgMsh2	89602722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	157	0	0	NA	exonic	Minar1	synonymous SNV	Minar1:NM_153509:exon2:c.G621A:p.Q207Q	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.498922803	2	0.9991911	GCT	synonymous	NA	NA	NA	NA
M6	chr9	90093785	12A2p6	cell line	sgMsh2	90093785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	181	4	0	0	exonic	Morf4l1	nonsynonymous SNV	"Morf4l1:NM_024431:exon11:c.T836C:p.L279P,Morf4l1:NM_001039147:exon12:c.T953C:p.L318P,Morf4l1:NM_001357780:exon12:c.T950C:p.L317P"	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.359439009	3	0.9994458	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	90223478	12A2p6	cell line	sgMsh2	90223478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	107	49	16	0.326530612	exonic	Tbc1d2b	synonymous SNV	Tbc1d2b:NM_194334:exon7:c.A1548T:p.R516R	9qE3.1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998718	TTC	synonymous	NA	NA	NA	NA
M6	chr9	91364112	12A2p6	cell line	sgMsh2	91364112	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	152	0	0	NA	exonic	Zic1	frameshift deletion	"Zic1:NM_009573:exon1:c.906delT:p.C304Afs*77,Zic1:NM_001376941:exon2:c.906delT:p.C304Afs*77"	9qE3.2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chr9	95462729	12A2p6	cell line	sgMsh2	95462729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	183	192	52	0.270833333	exonic	U2surp	synonymous SNV	"U2surp:NM_001357977:exon25:c.T1698C:p.P566P,U2surp:NM_001357975:exon26:c.T2790C:p.P930P,U2surp:NM_001357976:exon26:c.T1698C:p.P566P,U2surp:NM_026476:exon26:c.T2793C:p.P931P,U2surp:NM_001114977:exon27:c.T2925C:p.P975P,U2surp:NM_001357974:exon27:c.T2922C:p.P974P"	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	TAG	synonymous	NA	NA	NA	NA
M6	chr9	95678362	12A2p6	cell line	sgMsh2	95678362	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	91	15	0	0	exonic	Pcolce2	stopgain	Pcolce2:NM_029620:exon4:c.G463T:p.G155X	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.869091335	1	0.9801911	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	95865695	12A2p6	cell line	sgMsh2	95865695	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	216	17	2	0.117647059	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon4:c.T1029G:p.D343E	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M6	chr9	95945351	12A2p6	cell line	sgMsh2	95945351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	185	12	1	0.083333333	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7348G:p.S2450G	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999993	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	95945356	12A2p6	cell line	sgMsh2	95945356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	184	12	1	0.083333333	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7353C:p.R2451S	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999992	GAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	117	19	0	0	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9958789	GAA	nonsynonymous	T	5	TTTTT	NA
M6	chr9	97365830	12A2p6	cell line	sgMsh2	97365830	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	46	0	0	NA	exonic	Trim42	nonsynonymous SNV	Trim42:NM_030219:exon2:c.C812T:p.A271V	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.992839	GGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	97570592	12A2p6	cell line	sgMsh2	97570592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	113	2	0	0	exonic	Clstn2	nonsynonymous SNV	Clstn2:NM_022319:exon5:c.A761G:p.D254G	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.965657038	1	0.9996823	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	98444684	12A2p6	cell line	sgMsh2	98444684	T	G	SNV	Mutect2;Vardict	2	0.046	92	305	0	0	exonic	Rbp1	nonsynonymous SNV	Rbp1:NM_011254:exon3:c.T347G:p.L116R	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.246779021	3	0.9999762	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	99583360	12A2p6	cell line	sgMsh2	99583360	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	76	76	17	0.223684211	exonic	Dbr1	nonsynonymous SNV	"Dbr1:NM_001368298:exon7:c.A909C:p.K303N,Dbr1:NM_031403:exon8:c.A990C:p.K330N"	9qE3.3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9990071	AAT	nonsynonymous	A	5	AAAAA	NA
M6	chr9	101101410	12A2p6	cell line	sgMsh2	101101410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	154	82	19	0.231707317	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T982C:p.C328R,Msl2:NM_001379344:exon3:c.T760C:p.C254R"	9qE4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	ATG	nonsynonymous	NA	NA	NA	NA
M6	chr9	102723707	12A2p6	cell line	sgMsh2	102723707	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	43	41	13	0.317073171	exonic	Amotl2	synonymous SNV	Amotl2:NM_019764:exon3:c.A873T:p.A291A	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.858361812	1	9.44E-07	CAG	synonymous	NA	NA	NA	NA
M6	chr9	102730061	12A2p6	cell line	sgMsh2	102730061	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	23	47	18	0.382978723	exonic	Amotl2	nonsynonymous SNV	Amotl2:NM_019764:exon8:c.G1968T:p.Q656H	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9680764	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	103343982	12A2p6	cell line	sgMsh2	103343982	T	C	SNV	Mutect2;MuSe;Vardict	3	0.125	70	64	7	0.109375	exonic	Topbp1	nonsynonymous SNV	Topbp1:NM_176979:exon23:c.T3805C:p.S1269P	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.670595166	2	0.7740066	GTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	104004794	12A2p6	cell line	sgMsh2	104004794	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	99	7	2	0.285714286	exonic	Nphp3	synonymous SNV	"Nphp3:NM_028721:exon2:c.G462A:p.A154A,Nphp3:NM_172460:exon2:c.G462A:p.A154A"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997826	CGG	synonymous	NA	NA	NA	NA
M6	chr9	104098898	12A2p6	cell line	sgMsh2	104098898	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	91	0	0	NA	exonic	Ackr4	synonymous SNV	Ackr4:NM_145700:exon3:c.C849T:p.V283V	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.418451383	3	0.6801774	CGA	synonymous	NA	NA	NA	NA
M6	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	190	91	7	0.076923077	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.02E-09	AAC	synonymous	NA	NA	NA	NA
M6	chr9	104218563	12A2p6	cell line	sgMsh2	104218563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	117	70	12	0.171428571	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon15:c.A1677G:p.V559V,Dnajc13:NM_001359740:exon15:c.A1677G:p.V559V"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999338	CTA	synonymous	NA	NA	NA	NA
M6	chr9	105022375	12A2p6	cell line	sgMsh2	105022375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	141	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.A1310G:p.K437R,Cpne4:NM_001378996:exon14:c.A1280G:p.K427R,Cpne4:NM_028719:exon14:c.A1256G:p.K419R"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.611582791	2	0.999251	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	105073826	12A2p6	cell line	sgMsh2	105073826	-	A	Insertion	Strelka2;Vardict	2	0.0387	155	178	0	0	exonic	Mrpl3	frameshift insertion	"Mrpl3:NM_001364512:exon8:c.476dupA:p.N160Kfs*28,Mrpl3:NM_001364513:exon8:c.791dupA:p.N265Kfs*28,Mrpl3:NM_053159:exon8:c.791dupA:p.N265Kfs*28"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.207616263	NA	NA	CCA	frameshift	NA	NA	NA	1
M6	chr9	105414742	12A2p6	cell line	sgMsh2	105414742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	74	216	62	0.287037037	exonic	Atp2c1	nonsynonymous SNV	"Atp2c1:NM_001253831:exon26:c.A2620G:p.N874D,Atp2c1:NM_001359823:exon26:c.A2470G:p.N824D,Atp2c1:NM_001253834:exon27:c.A2518G:p.N840D,Atp2c1:NM_175025:exon27:c.A2518G:p.N840D,Atp2c1:NM_001359822:exon28:c.A2530G:p.N844D"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	TTA	nonsynonymous	NA	NA	NA	NA
M6	chr9	105418083	12A2p6	cell line	sgMsh2	105418083	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	205	111	3	0.027027027	exonic	Atp2c1	frameshift deletion	"Atp2c1:NM_001253831:exon25:c.2553delT:p.F851Lfs*6,Atp2c1:NM_001359823:exon25:c.2403delT:p.F801Lfs*6,Atp2c1:NM_001253834:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_175025:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_001359822:exon27:c.2463delT:p.F821Lfs*6"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6	chr9	105699314	12A2p6	cell line	sgMsh2	105699314	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	72	0	0	NA	exonic	Col6a6	nonsynonymous SNV	Col6a6:NM_001102607:exon35:c.C5846T:p.A1949V	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.595488507	2	0.9577621	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	147	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999909	ATC	nonsynonymous	NA	NA	NA	NA
M6	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	54	54	5	0.092592593	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9957663	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	106627561	12A2p6	cell line	sgMsh2	106627561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	71	0	0	NA	exonic	Iqcf6	synonymous SNV	Iqcf6:NM_001101628:exon2:c.T390C:p.Y130Y	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998619	ATG	synonymous	NA	NA	NA	NA
M6	chr9	106844234	12A2p6	cell line	sgMsh2	106844234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	199	79	18	0.227848101	exonic	Dcaf1	synonymous SNV	"Dcaf1:NM_001015507:exon9:c.T1224A:p.A408A,Dcaf1:NM_001373930:exon9:c.T1224A:p.A408A"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
M6	chr9	107526094	12A2p6	cell line	sgMsh2	107526094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	111	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174048:exon32:c.A2753G:p.N918S,Cacna2d2:NM_001174049:exon32:c.A2750G:p.N917S,Cacna2d2:NM_001174050:exon32:c.A2753G:p.N918S,Cacna2d2:NM_001174047:exon33:c.A2771G:p.N924S,Cacna2d2:NM_020263:exon33:c.A2771G:p.N924S"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999016	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Vardict	2	0.042	103	1	0	0	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.225319976	3	0.9999982	CTT	nonsynonymous	NA	NA	NA	NA
M6	chr9	107586400	12A2p6	cell line	sgMsh2	107586400	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	82	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon3:c.A916G:p.I306V	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.434545667	2	0.5192278	TAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	107788136	12A2p6	cell line	sgMsh2	107788136	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	234	162	2	0.012345679	exonic	Rbm6	synonymous SNV	"Rbm6:NM_011251:exon13:c.T2316C:p.S772S,Rbm6:NM_029169:exon13:c.T1920C:p.S640S"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.236049498	3	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6	chr9	107788148	12A2p6	cell line	sgMsh2	107788148	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	254	185	3	0.016216216	exonic	Rbm6	nonsynonymous SNV	"Rbm6:NM_011251:exon13:c.T2304A:p.N768K,Rbm6:NM_029169:exon13:c.T1908A:p.N636K"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.198496169	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	107901383	12A2p6	cell line	sgMsh2	107901383	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	49	12	3	0.25	exonic	Mon1a	nonsynonymous SNV	Mon1a:NM_028369:exon4:c.C805T:p.L269F	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9941189	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	107929742	12A2p6	cell line	sgMsh2	107929742	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	94	0	0	NA	exonic	Actl11	nonsynonymous SNV	Actl11:NM_026338:exon1:c.G1263T:p.Q421H	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.584758984	2	0.9932803	AGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	107963385	12A2p6	cell line	sgMsh2	107963385	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	80	21	8	0.380952381	exonic	Traip	synonymous SNV	Traip:NM_011634:exon10:c.C852A:p.T284T	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9992375	CCA	synonymous	NA	NA	NA	NA
M6	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	188	34	2	0.058823529	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.214590453	3	1.02E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	108063508	12A2p6	cell line	sgMsh2	108063508	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	44	16	3	0.1875	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon23:c.T2151G:p.N717K,Rnf123:NM_032543:exon23:c.T2133G:p.N711K"	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9918357	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	108083085	12A2p6	cell line	sgMsh2	108083085	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	102	0	0	NA	exonic	Mst1	nonsynonymous SNV	Mst1:NM_008243:exon10:c.G1189T:p.G397C	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9998216	GGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	108112472	12A2p6	cell line	sgMsh2	108112472	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	98	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon5:c.C6080T:p.S2027L	9qF1	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9997677	CGA	nonsynonymous	NA	NA	NA	NA
M6	chr9	108484042	12A2p6	cell line	sgMsh2	108484042	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	115	98	3	0.030612245	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon15:c.A1772G:p.N591S	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.305791395	3	0.9998614	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	71	146	28	0.191780822	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6	chr9	108563479	12A2p6	cell line	sgMsh2	108563479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	215	205	9	0.043902439	exonic	Impdh2	nonsynonymous SNV	"Impdh2:NM_001378921:exon8:c.A878G:p.K293R,Impdh2:NM_011830:exon8:c.A878G:p.K293R"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.9856531	AAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Vardict	2	0.048	87	85	1	0.011764706	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.257508544	3	0.9999268	TAC	synonymous	NA	NA	NA	NA
M6	chr9	108968614	12A2p6	cell line	sgMsh2	108968614	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	154	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon56:c.G5063C:p.G1688A	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999943	GGA	nonsynonymous	NA	NA	NA	NA
M6	chr9	108973691	12A2p6	cell line	sgMsh2	108973691	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	161	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon78:c.G6361A:p.D2121N	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.348709486	3	0.9996019	AGA	nonsynonymous	NA	NA	NA	NA
M6	chr9	109082209	12A2p6	cell line	sgMsh2	109082209	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	76	133	1	0.007518797	exonic	Tma7	synonymous SNV	Tma7:NM_183250:exon2:c.C34T:p.L12L	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.574029462	2	0.9801564	AGG	synonymous	NA	NA	NA	NA
M6	chr9	109688739	12A2p6	cell line	sgMsh2	109688739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	213	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon8:c.T1178A:p.V393E	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.944197993	1	0.9999937	CAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	109835328	12A2p6	cell line	sgMsh2	109835328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	113	14	3	0.214285714	exonic	Nme6	nonsynonymous SNV	Nme6:NM_018757:exon3:c.A4G:p.T2A	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999138	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	110036791	12A2p6	cell line	sgMsh2	110036791	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	78	163	12	0.073619632	exonic	Map4	synonymous SNV	"Map4:NM_001205330:exon8:c.T1848G:p.P616P,Map4:NM_001205332:exon8:c.T1848G:p.P616P,Map4:NM_008633:exon8:c.T1848G:p.P616P"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.627677075	2	0.9377326	CTT	synonymous	NA	NA	NA	NA
M6	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	169	214	46	0.214953271	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999979	GCT	nonsynonymous	NA	NA	NA	NA
M6	chr9	110373489	12A2p6	cell line	sgMsh2	110373489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	63	77	3	0.038961039	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon6:c.A731G:p.H244R,Scap:NM_001103162:exon6:c.A731G:p.H244R"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.60621803	2	0.09254396	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	104	12	2	0.166666667	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8966055	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M6	chr9	110511451	12A2p6	cell line	sgMsh2	110511451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	121	1	0	0	exonic	Kif9	nonsynonymous SNV	"Kif9:NM_001163569:exon15:c.T1511C:p.F504S,Kif9:NM_010628:exon15:c.T1511C:p.F504S"	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	TTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	110633693	12A2p6	cell line	sgMsh2	110633693	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	62	67	2	0.029850746	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon27:c.A4303C:p.S1435R	9qF2	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.515017087	2	0.9385293	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	111349370	12A2p6	cell line	sgMsh2	111349370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	88	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon7:c.T1125C:p.H375H	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.552570416	2	0.9947333	ATG	synonymous	NA	NA	NA	NA
M6	chr9	111391303	12A2p6	cell line	sgMsh2	111391303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	90	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon20:c.C7107A:p.S2369S	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.999606	CCT	synonymous	NA	NA	NA	NA
M6	chr9	113674457	12A2p6	cell line	sgMsh2	113674457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	121	310	88	0.283870968	exonic	Pdcd6ip	synonymous SNV	"Pdcd6ip:NM_001164677:exon10:c.T1242C:p.S414S,Pdcd6ip:NM_001164678:exon10:c.T1227C:p.S409S,Pdcd6ip:NM_011052:exon10:c.T1227C:p.S409S"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999492	CAG	synonymous	NA	NA	NA	NA
M6	chr9	113908688	12A2p6	cell line	sgMsh2	113908688	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	88	17	0	0	exonic	Clasp2	synonymous SNV	"Clasp2:NM_029633:exon29:c.T3129C:p.D1043D,Clasp2:NM_001286600:exon31:c.T3183C:p.D1061D"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.456004713	2	0.7885336	ATC	synonymous	NA	NA	NA	NA
M6	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Vardict	2	0.05	86	88	6	0.068181818	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.268238066	3	0.9998556	ATC	nonsynonymous	A	5	AAAAA	NA
M6	chr9	114723292	12A2p6	cell line	sgMsh2	114723292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	157	135	26	0.192592593	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon13:c.A1499C:p.D500A	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999953	GAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	115216918	12A2p6	cell line	sgMsh2	115216918	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	109	4	0	0	exonic	Osbpl10	nonsynonymous SNV	Osbpl10:NM_148958:exon8:c.A1621G:p.I541V	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.354074247	3	0.9942924	CAT	nonsynonymous	NA	NA	NA	NA
M6	chr9	118538955	12A2p6	cell line	sgMsh2	118538955	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	92	109	3	0.027522936	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon11:c.A1225G:p.S409G	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.413086622	3	9.78E-06	TAG	nonsynonymous	NA	NA	NA	NA
M6	chr9	119072264	12A2p6	cell line	sgMsh2	119072264	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	164	8	0	0	exonic	Plcd1	nonsynonymous SNV	"Plcd1:NM_001293648:exon13:c.T2099C:p.V700A,Plcd1:NM_019676:exon13:c.T2021C:p.V674A"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.219955214	3	1.63E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	60	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.407721861	3	0.7572075	GTG	nonsynonymous	NA	NA	NA	NA
M6	chr9	119359281	12A2p6	cell line	sgMsh2	119359281	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	189	14	5	0.357142857	exonic	Xylb	nonsynonymous SNV	Xylb:NM_001033209:exon2:c.G152A:p.S51N	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999994	AGC	nonsynonymous	NA	NA	NA	NA
M6	chr9	119361126	12A2p6	cell line	sgMsh2	119361126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	88	8	2	0.25	exonic	Xylb	synonymous SNV	Xylb:NM_001033209:exon3:c.T198C:p.G66G	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.745701824	1	0.5464947	GTG	synonymous	NA	NA	NA	NA
M6	chr9	119515973	12A2p6	cell line	sgMsh2	119515973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	21	0	0	NA	exonic	Scn5a	nonsynonymous SNV	"Scn5a:NM_001253860:exon17:c.A3329G:p.E1110G,Scn5a:NM_021544:exon18:c.A3329G:p.E1110G"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.963713	CTC	nonsynonymous	NA	NA	NA	NA
M6	chr9	119638553	12A2p6	cell line	sgMsh2	119638553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	74	0	0	NA	exonic	Scn10a	synonymous SNV	"Scn10a:NM_001205321:exon16:c.C2520T:p.V840V,Scn10a:NM_009134:exon16:c.C2520T:p.V840V"	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.998867	CGA	synonymous	GAC	8	GACGACGA	NA
M6	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	64	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	2	1	1	0.9978087	CCC	synonymous	NA	NA	NA	NA
M6	chr9	119956940	12A2p6	cell line	sgMsh2	119956940	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	85	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon15:c.A2003G:p.N668S	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.396992338	3	0.8691555	AAC	nonsynonymous	NA	NA	NA	NA
M6	chr9	121208159	12A2p6	cell line	sgMsh2	121208159	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	88	1	0	0	exonic	Ulk4	stopgain	Ulk4:NM_177589:exon18:c.C1762T:p.Q588X	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.278967589	3	0.9997842	TGG	nonsynonymous	NA	NA	NA	NA
M6	chr9	121690387	12A2p6	cell line	sgMsh2	121690387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	51	15	2	0.133333333	exonic	Sec22c	synonymous SNV	"Sec22c:NM_001164562:exon4:c.T375C:p.H125H,Sec22c:NM_178677:exon5:c.T375C:p.H125H"	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9948431	AAT	synonymous	NA	NA	NA	NA
M6	chr9	123051339	12A2p6	cell line	sgMsh2	123051339	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	exonic	Tgm4	synonymous SNV	Tgm4:NM_177911:exon8:c.A804G:p.A268A	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9976594	CAG	synonymous	NA	NA	NA	NA
M6	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	120	54	1	0.018518519	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	0.380898054	3	0.9732508	ATA	nonsynonymous	NA	NA	NA	NA
M6	chr9	123582251	12A2p6	cell line	sgMsh2	123582251	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	64	97	0	0	exonic	Sacm1l	frameshift deletion	Sacm1l:NM_030692:exon14:c.1104delT:p.L370fs*0	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6	chr9	124028825	12A2p6	cell line	sgMsh2	124028825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	173	0	0	NA	exonic	Ccr3	nonsynonymous SNV	Ccr3:NM_009914:exon2:c.T196C:p.Y66H	9qF4	chr9-4330518-124127055	4	2	2	0.93	4.989228032	RARE KARYOTYPE	1	1	1	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
M6	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	38	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Vardict	2	0.059	77	12	1	0.083333333	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6	chrX	7676186	12A2p6	cell line	sgMsh2	7676186	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	59	0	0	NA	exonic	Magix	nonsynonymous SNV	Magix:NM_018832:exon4:c.G430A:p.G144R	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M6	chrX	8273656	12A2p6	cell line	sgMsh2	8273656	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	116	0	0	NA	exonic	Slc38a5	nonsynonymous SNV	Slc38a5:NM_172479:exon6:c.T419A:p.I140N	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	CAT	10	CATCATCATC	NA
M6	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	132	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6	chrX	12604926	12A2p6	cell line	sgMsh2	12604926	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.497	113	160	71	0.44375	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon4:c.A363T:p.E121D	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	146	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6	chrX	17215699	12A2p6	cell line	sgMsh2	17215699	T	C	SNV	Mutect2;Vardict	2	0.088	47	0	0	NA	exonic	Efhc2	synonymous SNV	Efhc2:NM_028916:exon9:c.A1236G:p.T412T	XqA1.2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M6	chrX	20517466	12A2p6	cell line	sgMsh2	20517466	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	74	25	14	0.56	exonic	Jade3	nonsynonymous SNV	"Jade3:NM_199317:exon13:c.T2045G:p.V682G,Jade3:NM_001289684:exon14:c.T1733G:p.V578G"	XqA1.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6	chrX	20644940	12A2p6	cell line	sgMsh2	20644940	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	63	44	19	0.431818182	exonic	Rbm10	nonsynonymous SNV	"Rbm10:NM_001358905:exon7:c.A317T:p.Q106L,Rbm10:NM_001167776:exon8:c.A569T:p.Q190L,Rbm10:NM_001358904:exon8:c.A569T:p.Q190L,Rbm10:NM_001167775:exon9:c.A800T:p.Q267L,Rbm10:NM_001358903:exon9:c.A800T:p.Q267L,Rbm10:NM_145627:exon9:c.A800T:p.Q267L"	XqA1.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6	chrX	33314184	12A2p6	cell line	sgMsh2	33314184	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.375	14	0	0	NA	exonic	Btbd35f12	nonsynonymous SNV	Btbd35f12:NM_001099333:exon1:c.G762T:p.K254N	XqA3.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6	chrX	36044973	12A2p6	cell line	sgMsh2	36044973	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	38	84	11	0.130952381	exonic	Dock11	synonymous SNV	Dock11:NM_001009947:exon42:c.T4689C:p.P1563P	XqA3.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M6	chrX	42715097	12A2p6	cell line	sgMsh2	42715097	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	29	0	0	NA	exonic	Tenm1	synonymous SNV	Tenm1:NM_011855:exon16:c.C2448T:p.C816C	XqA4	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CGC	synonymous	NA	NA	NA	NA
M6	chrX	47811248	12A2p6	cell line	sgMsh2	47811248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	41	47	28	0.595744681	exonic	Smarca1	synonymous SNV	"Smarca1:NM_001290708:exon23:c.T3027C:p.N1009N,Smarca1:NM_001358618:exon23:c.T3012C:p.N1004N,Smarca1:NM_001358619:exon23:c.T3027C:p.N1009N,Smarca1:NM_053123:exon23:c.T3027C:p.N1009N"	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M6	chrX	48263593	12A2p6	cell line	sgMsh2	48263593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	59	53	16	0.301886792	exonic	Utp14a	synonymous SNV	Utp14a:NM_028276:exon6:c.T498C:p.S166S	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6	chrX	48263598	12A2p6	cell line	sgMsh2	48263598	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	60	55	17	0.309090909	exonic	Utp14a	nonsynonymous SNV	Utp14a:NM_028276:exon6:c.T503A:p.F168Y	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M6	chrX	48378995	12A2p6	cell line	sgMsh2	48378995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	48	37	11	0.297297297	exonic	Bcorl1	nonsynonymous SNV	Bcorl1:NM_178782:exon8:c.A3740T:p.Q1247L	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6	chrX	48519719	12A2p6	cell line	sgMsh2	48519719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	108	0	0	NA	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon1:c.T119G:p.I40S	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6	chrX	48872877	12A2p6	cell line	sgMsh2	48872877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	83	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A958G:p.T320A	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chrX	48872904	12A2p6	cell line	sgMsh2	48872904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	71	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A931G:p.S311G	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6	chrX	48875321	12A2p6	cell line	sgMsh2	48875321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	36	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon5:c.A500G:p.N167S	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M6	chrX	52054518	12A2p6	cell line	sgMsh2	52054518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	34	0	0	NA	exonic	Gpc4	nonsynonymous SNV	Gpc4:NM_008150:exon7:c.T1220C:p.V407A	XqA5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	45	4	0	0	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	56661300	12A2p6	cell line	sgMsh2	56661300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	101	43	18	0.418604651	exonic	Slc9a6	nonsynonymous SNV	"Slc9a6:NM_172780:exon16:c.T1961C:p.M654T,Slc9a6:NM_001358861:exon17:c.T1802C:p.M601T"	XqA6	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6	chrX	57304585	12A2p6	cell line	sgMsh2	57304585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	63	0	0	NA	exonic	Arhgef6	synonymous SNV	Arhgef6:NM_152801:exon3:c.T387C:p.A129A	XqA6	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6	chrX	61185286	12A2p6	cell line	sgMsh2	61185286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	329	0	0	NA	exonic	Cdr1	synonymous SNV	Cdr1:NM_001166658:exon1:c.G273T:p.S91S	XqA6	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M6	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	113	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M6	chrX	73795591	12A2p6	cell line	sgMsh2	73795591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	34	2	2	1	exonic	Pdzd4	synonymous SNV	"Pdzd4:NM_001290540:exon6:c.C765T:p.C255C,Pdzd4:NM_001029868:exon8:c.C1110T:p.C370C"	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGC	synonymous	NA	NA	NA	NA
M6	chrX	74018000	12A2p6	cell line	sgMsh2	74018000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	55	6	4	0.666666667	exonic	Irak1	synonymous SNV	Irak1:NM_001177973:exon12:c.T1560C:p.H520H	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
M6	chrX	74273681	12A2p6	cell line	sgMsh2	74273681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	63	31	14	0.451612903	exonic	Dnase1l1	nonsynonymous SNV	"Dnase1l1:NM_001370787:exon7:c.T701G:p.I234S,Dnase1l1:NM_001172154:exon8:c.T779G:p.I260S,Dnase1l1:NM_027109:exon8:c.T779G:p.I260S"	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	70	83	8	0.096385542	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M6	chrX	74411431	12A2p6	cell line	sgMsh2	74411431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	106	172	50	0.290697674	exonic	G6pdx	nonsynonymous SNV	G6pdx:NM_008062:exon9:c.A878G:p.K293R	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6	chrX	74640741	12A2p6	cell line	sgMsh2	74640741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	125	0	0	NA	exonic	Gm5640	synonymous SNV	Gm5640:NM_001099302:exon4:c.A738G:p.K246K	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6	chrX	75287087	12A2p6	cell line	sgMsh2	75287087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	80	3	2	0.666666667	exonic	F8	nonsynonymous SNV	"F8:NM_001161373:exon13:c.A3196G:p.N1066D,F8:NM_001161374:exon13:c.A3196G:p.N1066D,F8:NM_007977:exon14:c.A3406G:p.N1136D"	XqA7.3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M6	chrX	84474168	12A2p6	cell line	sgMsh2	84474168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	31	0	0	NA	exonic	Dmd	synonymous SNV	Dmd:NM_007868:exon51:c.T7323A:p.S2441S	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M6	chrX	85776446	12A2p6	cell line	sgMsh2	85776446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	34	15	8	0.533333333	exonic	Gk	nonsynonymous SNV	"Gk:NM_001294138:exon1:c.A58G:p.T20A,Gk:NM_001294140:exon1:c.A58G:p.T20A,Gk:NM_001331046:exon1:c.A58G:p.T20A,Gk:NM_008194:exon1:c.A58G:p.T20A,Gk:NM_212444:exon1:c.A58G:p.T20A"	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6	chrX	89404332	12A2p6	cell line	sgMsh2	89404332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	52	0	0	NA	exonic	Dcaf8l	synonymous SNV	Dcaf8l:NM_008821:exon12:c.T2190C:p.G730G	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6	chrX	89753239	12A2p6	cell line	sgMsh2	89753239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	102	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.T676C:p.Y226H	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6	chrX	89754344	12A2p6	cell line	sgMsh2	89754344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	60	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.C1781T:p.A594V	XqC1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M6	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	104	4	2	0.5	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M6	chrX	94197377	12A2p6	cell line	sgMsh2	94197377	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	96	3	2	0.666666667	exonic	Eif2s3x	nonsynonymous SNV	Eif2s3x:NM_012010:exon10:c.C1093T:p.P365S	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6	chrX	94536944	12A2p6	cell line	sgMsh2	94536944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	130	557	261	0.468581688	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon11:c.A1880G:p.Y627C	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6	chrX	94538842	12A2p6	cell line	sgMsh2	94538842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	46	227	84	0.370044053	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon4:c.A1178G:p.Q393R	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M6	chrX	95926565	12A2p6	cell line	sgMsh2	95926565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	34	0	0	NA	exonic	Zc3h12b	nonsynonymous SNV	Zc3h12b:NM_001034907:exon9:c.A1103G:p.Y368C	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	97076114	12A2p6	cell line	sgMsh2	97076114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	69	0	0	NA	exonic	Pgr15l	nonsynonymous SNV	Pgr15l:NM_001033361:exon2:c.A101T:p.D34V	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	97076625	12A2p6	cell line	sgMsh2	97076625	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	81	0	0	NA	exonic	Pgr15l	stopgain	Pgr15l:NM_001033361:exon3:c.C409T:p.Q137X	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M6	chrX	98150436	12A2p6	cell line	sgMsh2	98150436	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.498	45	0	0	NA	exonic	Ar	nonsynonymous SNV	Ar:NM_013476:exon1:c.C655A:p.L219I	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	G	5	GGGGG	NA
M6	chrX	100506021	12A2p6	cell line	sgMsh2	100506021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	116	316	132	0.417721519	exonic	Igbp1	synonymous SNV	Igbp1:NM_008784:exon5:c.A843G:p.L281L	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M6	chrX	100626574	12A2p6	cell line	sgMsh2	100626574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	28	5	1	0.2	exonic	Kif4	nonsynonymous SNV	Kif4:NM_008446:exon1:c.C106A:p.P36T	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M6	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	19	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6	chrX	101411907	12A2p6	cell line	sgMsh2	101411907	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	140	85	37	0.435294118	exonic	Zmym3	nonsynonymous SNV	"Zmym3:NM_001177985:exon16:c.G2626C:p.V876L,Zmym3:NM_019831:exon16:c.G2626C:p.V876L"	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M6	chrX	102069453	12A2p6	cell line	sgMsh2	102069453	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	37	5	1	0.2	exonic	Rtl5	synonymous SNV	Rtl5:NM_001278534:exon1:c.G1410A:p.E470E	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M6	chrX	106187306	12A2p6	cell line	sgMsh2	106187306	T	C	SNV	Mutect2;Vardict	2	0.096	53	13	3	0.230769231	exonic	Pgk1	nonsynonymous SNV	Pgk1:NM_008828:exon1:c.T56C:p.V19A	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6	chrX	106930585	12A2p6	cell line	sgMsh2	106930585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	102	9	0	0	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.G374A:p.S125N	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M6	chrX	107946286	12A2p6	cell line	sgMsh2	107946286	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	147	0	0	NA	exonic	Gm732	synonymous SNV	Gm732:NM_001033252:exon2:c.T1020A:p.S340S	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M6	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	96	20	0	0	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M6	chrX	112119806	12A2p6	cell line	sgMsh2	112119806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	129	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A1968T:p.K656N	XqE1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	112627170	12A2p6	cell line	sgMsh2	112627170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	54	1	0	0	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_177747:exon6:c.G917A:p.S306N,Zfp711:NM_001381898:exon7:c.G917A:p.S306N"	XqE1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6	chrX	112632850	12A2p6	cell line	sgMsh2	112632850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	91	2	0	0	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_001381900:exon8:c.A1577G:p.H526R,Zfp711:NM_001381899:exon9:c.A1577G:p.H526R,Zfp711:NM_177747:exon9:c.A1712G:p.H571R,Zfp711:NM_001381898:exon10:c.A1712G:p.H571R"	XqE1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	112656104	12A2p6	cell line	sgMsh2	112656104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	141	26	9	0.346153846	exonic	Pof1b	synonymous SNV	Pof1b:NM_181579:exon9:c.T936C:p.I312I	XqE1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
M6	chrX	130289939	12A2p6	cell line	sgMsh2	130289939	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	67	35	6	0.171428571	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon25:c.A3098T:p.E1033V	XqE3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M6	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	39	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	57	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6	chrX	135613266	12A2p6	cell line	sgMsh2	135613266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	131	0	0	NA	exonic	Prame	nonsynonymous SNV	Prame:NM_029459:exon10:c.G1273A:p.E425K	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
M6	chrX	135842828	12A2p6	cell line	sgMsh2	135842828	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	55	0	0	NA	exonic	Gprasp2	nonsynonymous SNV	"Gprasp2:NM_001359371:exon6:c.G935T:p.R312M,Gprasp2:NM_001163015:exon7:c.G935T:p.R312M,Gprasp2:NM_001163016:exon7:c.G935T:p.R312M,Gprasp2:NM_001163017:exon7:c.G935T:p.R312M"	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6	chrX	136076062	12A2p6	cell line	sgMsh2	136076062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	138	0	0	NA	exonic	Nxf3	nonsynonymous SNV	Nxf3:NM_001024141:exon12:c.A1028G:p.H343R	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6	chrX	136139925	12A2p6	cell line	sgMsh2	136139925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	51	0	0	NA	exonic	Bex4	synonymous SNV	"Bex4:NM_001359569:exon3:c.A66G:p.K22K,Bex4:NM_001359570:exon3:c.A66G:p.K22K,Bex4:NM_212457:exon3:c.A66G:p.K22K"	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	synonymous	A	5	AAAAA	NA
M6	chrX	136214247	12A2p6	cell line	sgMsh2	136214247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	95	0	0	NA	exonic	Bex1	nonsynonymous SNV	Bex1:NM_009052:exon3:c.T332C:p.V111A	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	CCGC	8	CCGCCCGC	NA
M6	chrX	136832106	12A2p6	cell line	sgMsh2	136832106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	36	0	0	NA	exonic	Plp1	synonymous SNV	"Plp1:NM_001290561:exon3:c.A345T:p.A115A,Plp1:NM_011123:exon3:c.A345T:p.A115A,Plp1:NM_001359117:exon4:c.A345T:p.A115A,Plp1:NM_001359118:exon4:c.A345T:p.A115A,Plp1:NM_001359120:exon4:c.A345T:p.A115A,Plp1:NM_001359119:exon5:c.A345T:p.A115A"	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M6	chrX	136861391	12A2p6	cell line	sgMsh2	136861391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	98	0	0	NA	exonic	Rab9b	nonsynonymous SNV	Rab9b:NM_176971:exon3:c.T259C:p.F87L	XqF1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6	chrX	141722961	12A2p6	cell line	sgMsh2	141722961	A	G	SNV	Mutect2;Vardict	2	0.085	48	0	0	NA	exonic	Irs4	synonymous SNV	Irs4:NM_010572:exon1:c.T2238C:p.N746N	XqF2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAT	synonymous	TCACTG	15	TCACTGTCACTGTCA	NA
M6	chrX	143733094	12A2p6	cell line	sgMsh2	143733094	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	34	0	0	NA	exonic	Pak3	nonsynonymous SNV	"Pak3:NM_001195047:exon6:c.C554A:p.P185H,Pak3:NM_008778:exon6:c.C491A:p.P164H,Pak3:NM_001195046:exon7:c.C599A:p.P200H,Pak3:NM_001195048:exon7:c.C536A:p.P179H,Pak3:NM_001195049:exon9:c.C491A:p.P164H"	XqF2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Vardict	2	0.077	55	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M6	chrX	148703240	12A2p6	cell line	sgMsh2	148703240	A	G	SNV	Mutect2;Vardict	2	0.077	104	0	0	NA	exonic	Gm15127	synonymous SNV	Gm15127:NM_001114400:exon7:c.A1341G:p.T447T	XqF2	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6	chrX	152004181	12A2p6	cell line	sgMsh2	152004181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	59	468	217	0.463675214	exonic	Hsd17b10	nonsynonymous SNV	Hsd17b10:NM_016763:exon6:c.T638C:p.V213A	XqF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6	chrX	153392828	12A2p6	cell line	sgMsh2	153392828	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	32	2	0	0	exonic	Klf8	nonsynonymous SNV	"Klf8:NM_173780:exon7:c.A1028T:p.D343V,Klf8:NM_001357183:exon8:c.A1028T:p.D343V"	XqF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	155054380	12A2p6	cell line	sgMsh2	155054380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	279	0	0	NA	exonic	Magea5	synonymous SNV	Magea5:NM_020018:exon3:c.T15C:p.H5H	XqF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M6	chrX	155574712	12A2p6	cell line	sgMsh2	155574712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	94	3	2	0.666666667	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon3:c.A1496G:p.Y499C	XqF3	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6	chrX	160635155	12A2p6	cell line	sgMsh2	160635155	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.389	37	0	0	NA	exonic	Ppef1	frameshift deletion	Ppef1:NM_011147:exon11:c.1107delA:p.G370Afs*27	XqF4	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6	chrX	163939348	12A2p6	cell line	sgMsh2	163939348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	101	44	20	0.454545455	exonic	Zrsr2	nonsynonymous SNV	Zrsr2:NM_009453:exon10:c.T907C:p.C303R	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M6	chrX	166427251	12A2p6	cell line	sgMsh2	166427251	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.367	58	19	3	0.157894737	exonic	Ofd1	frameshift deletion	Ofd1:NM_177429:exon7:c.577delT:p.S193Pfs*2	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6	chrX	166568517	12A2p6	cell line	sgMsh2	166568517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	95	0	0	NA	exonic	Egfl6	nonsynonymous SNV	Egfl6:NM_019397:exon2:c.T73C:p.W25R	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	167306156	12A2p6	cell line	sgMsh2	167306156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	180	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.T2333C:p.M778T,Tlr7:NM_133211:exon3:c.T2333C:p.M778T,Tlr7:NM_001290756:exon4:c.T2333C:p.M778T,Tlr7:NM_001290758:exon4:c.T2342C:p.M781T,Tlr7:NM_001290755:exon5:c.T2333C:p.M778T"	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6	chrX	169253600	12A2p6	cell line	sgMsh2	169253600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	86	55	23	0.418181818	exonic	Arhgap6	synonymous SNV	"Arhgap6:NM_001287530:exon6:c.C726T:p.F242F,Arhgap6:NM_009707:exon6:c.C1302T:p.F434F,Arhgap6:NM_178754:exon6:c.C756T:p.F252F"	XqF5	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M6	chrY	1197294	12A2p6	cell line	sgMsh2	1197294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	117	48	23	0.479166667	exonic	Uty	nonsynonymous SNV	"Uty:NM_001326682:exon6:c.T458C:p.V153A,Uty:NM_001326683:exon6:c.T272C:p.V91A,Uty:NM_009484:exon6:c.T461C:p.V154A"	YqA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6	chrY	1367117	12A2p6	cell line	sgMsh2	1367117	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	104	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon22:c.A2969G:p.H990R	YqA1	NA	NA	NA	NA	0.93	4.989228032	RARE KARYOTYPE	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	4347311	12A2p6	cell line	sgMsh2	4347311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	290	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.T3577C:p.C1193R	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9937665	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	4348716	12A2p6	cell line	sgMsh2	4348716	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	111	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.A2172G:p.E724E	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9519271	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr1	4349292	12A2p6	cell line	sgMsh2	4349292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	584	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G1596T:p.Q532H	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	4352795	12A2p6	cell line	sgMsh2	4352795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	147	0	0	NA	exonic	Rp1	nonsynonymous SNV	"Rp1:NM_001195662:exon2:c.A61G:p.M21V,Rp1:NM_001370921:exon2:c.A31G:p.M11V,Rp1:NM_011283:exon2:c.A31G:p.M11V"	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	8.26E-08	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	5916369	12A2p6	cell line	sgMsh2	5916369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	106	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.T925C:p.Y309H	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.980179	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2	2	0.174	24	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.6692409	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	6802738	12A2p6	cell line	sgMsh2	6802738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	158	0	0	NA	exonic	St18	synonymous SNV	"St18:NM_173868:exon6:c.A696G:p.E232E,St18:NM_001244693:exon7:c.A696G:p.E232E,St18:NM_001244692:exon8:c.A696G:p.E232E"	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999971	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	6855401	12A2p6	cell line	sgMsh2	6855401	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	244	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon20:c.G2782A:p.D928N,St18:NM_001244693:exon21:c.G2782A:p.D928N,St18:NM_001244692:exon22:c.G2782A:p.D928N"	1qA1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	2	1	1	3.25E-09	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	192	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.915777641	1	0.9999754	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	9745771	12A2p6	cell line	sgMsh2	9745771	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	248	0	0	NA	exonic	Vcpip1	nonsynonymous SNV	Vcpip1:NM_173443:exon1:c.T2386C:p.F796L	1qA2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.366311056	3	0.9996844	AAG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr1	11231710	12A2p6	cell line	sgMsh2	11231710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	386	0	0	NA	exonic	Prex2	synonymous SNV	Prex2:NM_029525:exon35:c.T4236C:p.Y1412Y	1qA2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9999796	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	325	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.399185125	3	0.9988292	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M6_p20	chr1	12836257	12A2p6	cell line	sgMsh2	12836257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	105	0	0	NA	exonic	Sulf1	nonsynonymous SNV	"Sulf1:NM_001198566:exon12:c.G1522A:p.D508N,Sulf1:NM_001198565:exon13:c.G1522A:p.D508N,Sulf1:NM_172294:exon13:c.G1522A:p.D508N"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.864118389	1	0.9847744	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	12848408	12A2p6	cell line	sgMsh2	12848408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	111	0	0	NA	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.C2502T:p.C834C,Sulf1:NM_001198565:exon20:c.C2502T:p.C834C,Sulf1:NM_172294:exon20:c.C2502T:p.C834C"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9588517	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr1	12921116	12A2p6	cell line	sgMsh2	12921116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	271	0	0	NA	exonic	Slco5a1	nonsynonymous SNV	Slco5a1:NM_172841:exon4:c.A1348G:p.T450A	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9984465	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	14898123	12A2p6	cell line	sgMsh2	14898123	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	304	0	0	NA	exonic	Trpa1	nonsynonymous SNV	"Trpa1:NM_001348288:exon12:c.C1418T:p.T473M,Trpa1:NM_177781:exon12:c.C1418T:p.T473M"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.7095452	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	15815963	12A2p6	cell line	sgMsh2	15815963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	147	0	0	NA	exonic	Terf1	synonymous SNV	Terf1:NM_009352:exon4:c.A576G:p.E192E	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	5.81E-08	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	16440421	12A2p6	cell line	sgMsh2	16440421	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	181	0	0	NA	exonic	Stau2	synonymous SNV	"Stau2:NM_001111272:exon4:c.T216C:p.A72A,Stau2:NM_001347045:exon4:c.T216C:p.A72A,Stau2:NM_025303:exon5:c.T312C:p.A104A,Stau2:NM_001347044:exon7:c.T312C:p.A104A"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9894542	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	17621651	12A2p6	cell line	sgMsh2	17621651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	215	0	0	NA	exonic	Pi15	nonsynonymous SNV	Pi15:NM_053191:exon5:c.T563C:p.V188A	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.9873007	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	17747516	12A2p6	cell line	sgMsh2	17747516	C	T	SNV	Mutect2;Strelka2	2	0.122	244	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon6:c.C642T:p.G214G,Crispld1:NM_031402:exon6:c.C642T:p.G214G"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9999819	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr1	17752850	12A2p6	cell line	sgMsh2	17752850	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Crispld1	synonymous SNV	"Crispld1:NM_001356551:exon11:c.T1140C:p.S380S,Crispld1:NM_031402:exon11:c.T1140C:p.S380S"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9952975	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	17756262	12A2p6	cell line	sgMsh2	17756262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	372	0	0	NA	exonic	Crispld1	nonsynonymous SNV	"Crispld1:NM_001356551:exon13:c.T1249C:p.Y417H,Crispld1:NM_031402:exon13:c.T1249C:p.Y417H"	1qA3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.978145	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	74	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.7904398	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	20961291	12A2p6	cell line	sgMsh2	20961291	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	200	0	0	NA	exonic	Efhc1	nonsynonymous SNV	Efhc1:NM_027974:exon4:c.T712G:p.F238V	1qA4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.8773681	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	21001577	12A2p6	cell line	sgMsh2	21001577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	152	0	0	NA	exonic	Tram2	synonymous SNV	Tram2:NM_177409:exon11:c.A1098G:p.K366K	1qA4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9141572	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	23378790	12A2p6	cell line	sgMsh2	23378790	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	214	0	0	NA	exonic	Ogfrl1	synonymous SNV	"Ogfrl1:NM_001081079:exon3:c.C339T:p.I113I,Ogfrl1:NM_001379082:exon3:c.C342T:p.I114I,Ogfrl1:NM_001379083:exon3:c.C339T:p.I113I"	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999975	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	175	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.300562918	3	0.9999458	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	24322942	12A2p6	cell line	sgMsh2	24322942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	82	0	0	NA	exonic	Col19a1	synonymous SNV	Col19a1:NM_007733:exon25:c.A1749G:p.K583K	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.91587	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	25117350	12A2p6	cell line	sgMsh2	25117350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	153	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon23:c.G3127A:p.V1043I	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9968274	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	25228437	12A2p6	cell line	sgMsh2	25228437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	186	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon17:c.A2591G:p.Q864R	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9823487	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	25547416	12A2p6	cell line	sgMsh2	25547416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon5:c.G1195A:p.V399I	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.8276091	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	26682439	12A2p6	cell line	sgMsh2	26682439	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	225	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.G3659A:p.S1220N	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9925813	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	98	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.09551235	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	26683452	12A2p6	cell line	sgMsh2	26683452	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.186	215	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2646C:p.T882T	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.9998768	CTG	synonymous	CTGTA	10	CTGTACTGTA	NA
M6_p20	chr1	26683454	12A2p6	cell line	sgMsh2	26683454	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.186	215	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2644T:p.T882S	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.9998768	GTA	nonsynonymous	CTGTA	10	CTGTACTGTA	NA
M6_p20	chr1	26687339	12A2p6	cell line	sgMsh2	26687339	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	709	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G88A:p.A30T	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.150281459	3	1	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	28778215	12A2p6	cell line	sgMsh2	28778215	A	-	Deletion	Mutect2;Vardict	2	0.162	245	0	0	NA	exonic	Gm597	frameshift deletion	Gm597:NM_001013750:exon2:c.735delT:p.P246Hfs*2	1qA5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.760799886	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr1	31203467	12A2p6	cell line	sgMsh2	31203467	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	114	0	0	NA	exonic	Lgsn	nonsynonymous SNV	Lgsn:NM_153601:exon5:c.T629C:p.F210S	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.6270414	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	32545434	12A2p6	cell line	sgMsh2	32545434	C	T	SNV	Mutect2;MuSe;Vardict	3	0.06	887	0	0	NA	exonic	Gm5415	nonsynonymous SNV	Gm5415:NM_001164286:exon1:c.G1394A:p.R465K	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	33776997	12A2p6	cell line	sgMsh2	33776997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	160	0	0	NA	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001290699:exon8:c.T1388C:p.M463T,Zfp451:NM_001359274:exon10:c.T1871C:p.M624T,Zfp451:NM_001359275:exon10:c.T1871C:p.M624T,Zfp451:NM_133817:exon10:c.T1871C:p.M624T"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.530681402	2	0.9928816	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Vardict	2	0.059	119	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	0.9994564	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	33883519	12A2p6	cell line	sgMsh2	33883519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	129	0	0	NA	exonic	Bend6	synonymous SNV	Bend6:NM_177235:exon2:c.A42G:p.Q14Q	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9894521	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	34191980	12A2p6	cell line	sgMsh2	34191980	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	126	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_134448:exon36:c.T8653C:p.L2885L,Dst:NM_001276764:exon39:c.T9187C:p.L3063L"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.8296456	CTT	synonymous	TGACT	11	TGACTTGACTT	NA
M6_p20	chr1	34191985	12A2p6	cell line	sgMsh2	34191985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	127	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_134448:exon36:c.T8658C:p.T2886T,Dst:NM_001276764:exon39:c.T9192C:p.T3064T"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.7967026	CTT	synonymous	TGACT	11	TGACTTGACTT	NA
M6_p20	chr1	34473352	12A2p6	cell line	sgMsh2	34473352	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.109	90	0	0	NA	exonic	Ptpn18	nonsynonymous SNV	Ptpn18:NM_011206:exon14:c.T1237C:p.S413P	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9181939	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	315	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999999	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	36419763	12A2p6	cell line	sgMsh2	36419763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	100	0	0	NA	exonic	Fer1l5	synonymous SNV	Fer1l5:NM_001277076:exon46:c.T5154C:p.P1718P	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9857929	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr1	37232279	12A2p6	cell line	sgMsh2	37232279	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	242	0	0	NA	exonic	Cnga3	nonsynonymous SNV	"Cnga3:NM_009918:exon2:c.C35T:p.S12F,Cnga3:NM_001282010:exon3:c.C35T:p.S12F"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999853	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	37431486	12A2p6	cell line	sgMsh2	37431486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	160	0	0	NA	exonic	Unc50	nonsynonymous SNV	"Unc50:NM_001356528:exon2:c.T190C:p.Y64H,Unc50:NM_026123:exon2:c.T190C:p.Y64H"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.999822	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	38088168	12A2p6	cell line	sgMsh2	38088168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	362	0	0	NA	exonic	Rev1	nonsynonymous SNV	Rev1:NM_019570:exon6:c.T1010C:p.V337A	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	40111977	12A2p6	cell line	sgMsh2	40111977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	126	0	0	NA	exonic	Il1r2	nonsynonymous SNV	"Il1r2:NM_001360801:exon3:c.A1G:p.M1V,Il1r2:NM_001360800:exon4:c.A445G:p.M149V,Il1r2:NM_010555:exon4:c.A391G:p.M131V"	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.995165	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	40524327	12A2p6	cell line	sgMsh2	40524327	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	155	0	0	NA	exonic	Il18rap	synonymous SNV	Il18rap:NM_010553:exon4:c.C15G:p.G5G	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.9318342	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr1	40548690	12A2p6	cell line	sgMsh2	40548690	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	201	0	0	NA	exonic	Il18rap	nonsynonymous SNV	Il18rap:NM_010553:exon13:c.A1447C:p.S483R	1qB	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999973	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	43970423	12A2p6	cell line	sgMsh2	43970423	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	296	0	0	NA	exonic	Tpp2	nonsynonymous SNV	"Tpp2:NM_001310540:exon12:c.C1416A:p.D472E,Tpp2:NM_009418:exon12:c.C1416A:p.D472E"	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9999988	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	44117219	12A2p6	cell line	sgMsh2	44117219	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	165	0	0	NA	exonic	Poglut2	nonsynonymous SNV	Poglut2:NM_023645:exon2:c.G207T:p.K69N	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9933741	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	44773286	12A2p6	cell line	sgMsh2	44773286	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	89	0	0	NA	exonic	Gulp1	nonsynonymous SNV	Gulp1:NM_028450:exon7:c.T415G:p.L139V	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9741015	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	228	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999924	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	333	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	45822533	12A2p6	cell line	sgMsh2	45822533	A	-	Deletion	Mutect2;Vardict	2	0.071	177	0	0	NA	exonic	Wdr75	frameshift deletion	Wdr75:NM_028599:exon19:c.2132delA:p.T712Lfs*10	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.333436987	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr1	46223106	12A2p6	cell line	sgMsh2	46223106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	272	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon37:c.A5996G:p.Y1999C	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.999986	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	46234215	12A2p6	cell line	sgMsh2	46234215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	202	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.T7370C:p.L2457P	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	46819099	12A2p6	cell line	sgMsh2	46819099	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	297	0	0	NA	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon7:c.C2037T:p.D679D,Slc39a10:NM_001356416:exon8:c.C2037T:p.D679D,Slc39a10:NM_001356417:exon8:c.C2037T:p.D679D"	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.262992553	3	1.54E-09	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr1	46836054	12A2p6	cell line	sgMsh2	46836054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	262	0	0	NA	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon2:c.T87C:p.H29H,Slc39a10:NM_001356416:exon3:c.T87C:p.H29H,Slc39a10:NM_001356417:exon3:c.T87C:p.H29H"	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9999898	CAT	synonymous	CATGGT	13	CATGGTCATGGTC	NA
M6_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	192	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999901	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	53192152	12A2p6	cell line	sgMsh2	53192152	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	75	0	0	NA	exonic	Pms1	nonsynonymous SNV	Pms1:NM_153556:exon12:c.A2537C:p.N846T	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	0.9812615	ATT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr1	53299033	12A2p6	cell line	sgMsh2	53299033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	390	0	0	NA	exonic	Ormdl1	nonsynonymous SNV	Ormdl1:NM_145517:exon2:c.A55G:p.S19G	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9981675	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	53348375	12A2p6	cell line	sgMsh2	53348375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	219	0	0	NA	exonic	Asnsd1	nonsynonymous SNV	Asnsd1:NM_133728:exon4:c.G92A:p.G31D	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9930027	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Vardict	2	0.061	325	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	2.20E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Vardict	2	0.104	348	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.488414742	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr1	54486531	12A2p6	cell line	sgMsh2	54486531	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	203	0	0	NA	exonic	Pgap1	synonymous SNV	Pgap1:NM_001163314:exon25:c.T2464C:p.L822L	1qC1.1	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.9240701	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	54651725	12A2p6	cell line	sgMsh2	54651725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	361	0	0	NA	exonic	Ankrd44	nonsynonymous SNV	Ankrd44:NM_001081433:exon27:c.T2867C:p.V956A	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999971	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	54988042	12A2p6	cell line	sgMsh2	54988042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	240	0	0	NA	exonic	Sf3b1	nonsynonymous SNV	Sf3b1:NM_031179:exon24:c.A3653G:p.N1218S	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.427362899	3	0.09437477	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	55078678	12A2p6	cell line	sgMsh2	55078678	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	77	0	0	NA	exonic	Hspd1	nonsynonymous SNV	"Hspd1:NM_001356512:exon11:c.A1420T:p.I474F,Hspd1:NM_010477:exon11:c.A1420T:p.I474F"	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9488434	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	55079198	12A2p6	cell line	sgMsh2	55079198	C	-	Deletion	Mutect2;Vardict	2	0.167	231	0	0	NA	exonic	Hspd1	frameshift deletion	"Hspd1:NM_001356512:exon10:c.1248delG:p.D419Tfs*18,Hspd1:NM_010477:exon10:c.1248delG:p.D419Tfs*18"	1qC1.2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.784281364	NA	NA	TCT	frameshift	T	6	TTTTTT	-1
M6_p20	chr1	56871315	12A2p6	cell line	sgMsh2	56871315	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	228	0	0	NA	exonic	Satb2	synonymous SNV	"Satb2:NM_139146:exon7:c.A1170C:p.T390T,Satb2:NM_001358580:exon8:c.A1170C:p.T390T,Satb2:NM_001358581:exon8:c.A1170C:p.T390T"	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.998572	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	56891178	12A2p6	cell line	sgMsh2	56891178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	291	0	0	NA	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.T685C:p.Y229H,Satb2:NM_001358580:exon7:c.T685C:p.Y229H,Satb2:NM_001358581:exon7:c.T685C:p.Y229H"	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9960101	TAC	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr1	57383382	12A2p6	cell line	sgMsh2	57383382	A	G	SNV	Mutect2;MuSe;Vardict	3	0.11	231	0	0	NA	exonic	1700066M21Rik	nonsynonymous SNV	1700066M21Rik:NM_028546:exon2:c.A916G:p.T306A	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9963543	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	58015564	12A2p6	cell line	sgMsh2	58015564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	389	0	0	NA	exonic	Sgo2a	synonymous SNV	"Sgo2a:NM_001177867:exon4:c.T606C:p.H202H,Sgo2a:NM_199007:exon7:c.T906C:p.H302H"	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.999996	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	58062187	12A2p6	cell line	sgMsh2	58062187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	118	0	0	NA	exonic	Aox1	nonsynonymous SNV	Aox1:NM_009676:exon14:c.T1316C:p.I439T	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9876942	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	221	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9999642	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	58	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.5695735	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M6_p20	chr1	58400838	12A2p6	cell line	sgMsh2	58400838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	346	0	0	NA	exonic	Bzw1	synonymous SNV	Bzw1:NM_025824:exon6:c.A534G:p.K178K	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.9283711	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	58404268	12A2p6	cell line	sgMsh2	58404268	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.165	161	0	0	NA	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1142G:p.Y381C	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.855882	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	58404270	12A2p6	cell line	sgMsh2	58404270	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.165	161	0	0	NA	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1144G:p.K382E	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.855882	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	134	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.389792534	3	0.9459086	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	58997406	12A2p6	cell line	sgMsh2	58997406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	295	0	0	NA	exonic	C2cd6	nonsynonymous SNV	C2cd6:NM_026600:exon19:c.A6706T:p.M2236L	1qC1.3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9998492	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	59847167	12A2p6	cell line	sgMsh2	59847167	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	208	0	0	NA	exonic	Bmpr2	nonsynonymous SNV	Bmpr2:NM_007561:exon7:c.G962A:p.R321Q	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.6005891	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	59867606	12A2p6	cell line	sgMsh2	59867606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	347	0	0	NA	exonic	Bmpr2	synonymous SNV	Bmpr2:NM_007561:exon12:c.C1857T:p.G619G	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.9999737	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr1	60082077	12A2p6	cell line	sgMsh2	60082077	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	96	0	0	NA	exonic	Wdr12	nonsynonymous SNV	"Wdr12:NM_021312:exon11:c.G1081T:p.G361C,Wdr12:NM_001199060:exon12:c.G1081T:p.G361C,Wdr12:NM_001199061:exon12:c.G1081T:p.G361C"	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	2	1	1	0.9996418	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	60312190	12A2p6	cell line	sgMsh2	60312190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	543	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon50:c.A7346G:p.H2449R	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	211	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9919168	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	62159518	12A2p6	cell line	sgMsh2	62159518	-	A	Insertion	Mutect2;Vardict	2	0.085	144	0	0	NA	exonic	Pard3b	frameshift insertion	Pard3b:NM_001081050:exon7:c.765dupA:p.I257Nfs*37	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.399185125	NA	NA	GTA	frameshift	A	5	AAAAA	1
M6_p20	chr1	62344084	12A2p6	cell line	sgMsh2	62344084	A	C	SNV	Mutect2;Vardict	2	0.136	32	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon17:c.A2336C:p.E779A	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.6797521	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	63748090	12A2p6	cell line	sgMsh2	63748090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	156	0	0	NA	exonic	Fastkd2	nonsynonymous SNV	Fastkd2:NM_172422:exon9:c.T1682C:p.L561P	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9986746	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	65245796	12A2p6	cell line	sgMsh2	65245796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	289	0	0	NA	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon19:c.T2418C:p.T806T,Pikfyve:NM_011086:exon19:c.T2283C:p.T761T"	1qC2	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.8871188	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	66483256	12A2p6	cell line	sgMsh2	66483256	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	241	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon5:c.T616A:p.F206I,Unc80:NM_001368825:exon5:c.T616A:p.F206I,Unc80:NM_175510:exon5:c.T616A:p.F206I"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.9405436	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	66555061	12A2p6	cell line	sgMsh2	66555061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	450	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon22:c.A3604G:p.I1202V,Unc80:NM_001368825:exon22:c.A3604G:p.I1202V,Unc80:NM_175510:exon22:c.A3598G:p.I1200V"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.267688849	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	66590242	12A2p6	cell line	sgMsh2	66590242	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	192	0	0	NA	exonic	Unc80	synonymous SNV	"Unc80:NM_001368824:exon24:c.T3903C:p.S1301S,Unc80:NM_001368825:exon24:c.T3903C:p.S1301S,Unc80:NM_175510:exon24:c.T3897C:p.S1299S"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9983815	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr1	67145814	12A2p6	cell line	sgMsh2	67145814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	339	0	0	NA	exonic	Cps1	synonymous SNV	Cps1:NM_001080809:exon5:c.A499C:p.R167R	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999988	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	68560548	12A2p6	cell line	sgMsh2	68560548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	249	0	0	NA	exonic	Erbb4	synonymous SNV	Erbb4:NM_010154:exon3:c.C369T:p.Y123Y	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9998416	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr1	68560567	12A2p6	cell line	sgMsh2	68560567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	264	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon3:c.T350C:p.L117S	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.7780615	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	71559269	12A2p6	cell line	sgMsh2	71559269	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	191	0	0	NA	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon3:c.C190T:p.R64C	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.7899476	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	211	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.9948584	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74254915	12A2p6	cell line	sgMsh2	74254915	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	379	0	0	NA	exonic	Arpc2	nonsynonymous SNV	"Arpc2:NM_029711:exon5:c.A356C:p.N119T,Arpc2:NM_001357387:exon6:c.A356C:p.N119T"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999939	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74419626	12A2p6	cell line	sgMsh2	74419626	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	100	0	0	NA	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon5:c.T405G:p.D135E	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9872454	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74426621	12A2p6	cell line	sgMsh2	74426621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	122	0	0	NA	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon14:c.A1570G:p.N524D	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.6846894	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74466974	12A2p6	cell line	sgMsh2	74466974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	203	0	0	NA	exonic	Usp37	synonymous SNV	"Usp37:NM_001310662:exon15:c.A1611G:p.S537S,Usp37:NM_176972:exon16:c.A1611G:p.S537S"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9978001	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	236	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999093	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74565151	12A2p6	cell line	sgMsh2	74565151	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	234	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon15:c.T2191A:p.Y731N,Plcd4:NM_148937:exon16:c.T2287A:p.Y763N"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.854977	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74575816	12A2p6	cell line	sgMsh2	74575816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	422	0	0	NA	exonic	Zfp142	nonsynonymous SNV	"Zfp142:NM_001310668:exon5:c.A1837G:p.K613E,Zfp142:NM_029888:exon5:c.A1528G:p.K510E"	1qC3	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	2.76E-08	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	146	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.8491359	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	270	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.8414933	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	86	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.5563984	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	75212610	12A2p6	cell line	sgMsh2	75212610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	106	0	0	NA	exonic	Stk16	nonsynonymous SNV	"Stk16:NM_001277992:exon4:c.T317C:p.L106P,Stk16:NM_011494:exon4:c.T317C:p.L106P"	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.770192477	1	0.7450238	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	75217351	12A2p6	cell line	sgMsh2	75217351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	143	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.G87A:p.G29G	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9980663	TCC	synonymous	NA	NA	NA	NA
M6_p20	chr1	75315970	12A2p6	cell line	sgMsh2	75315970	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	129	0	0	NA	exonic	Dnpep	nonsynonymous SNV	"Dnpep:NM_001110831:exon5:c.C404T:p.T135I,Dnpep:NM_016878:exon5:c.C398T:p.T133I"	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999752	GGT	nonsynonymous	AGGTC	10	AGGTCAGGTC	NA
M6_p20	chr1	75429573	12A2p6	cell line	sgMsh2	75429573	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	68	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon36:c.A7118G:p.Q2373R,Speg:NM_007463:exon38:c.A9323G:p.Q3108R"	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.915777641	1	0.9794536	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	75532489	12A2p6	cell line	sgMsh2	75532489	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	270	0	0	NA	exonic	Stk11ip	nonsynonymous SNV	Stk11ip:NM_027886:exon18:c.A2261G:p.D754G	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	75556905	12A2p6	cell line	sgMsh2	75556905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	79	0	0	NA	exonic	Slc4a3	nonsynonymous SNV	"Slc4a3:NM_001357149:exon20:c.T3170C:p.V1057A,Slc4a3:NM_001357150:exon20:c.T3170C:p.V1057A,Slc4a3:NM_009208:exon20:c.T3170C:p.V1057A"	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.5923117	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	78817742	12A2p6	cell line	sgMsh2	78817742	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	100	0	0	NA	exonic	Kcne4	nonsynonymous SNV	Kcne4:NM_021342:exon2:c.T106A:p.Y36N	1qC4	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.925865	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	81241326	12A2p6	cell line	sgMsh2	81241326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	94	0	0	NA	exonic	Nyap2	nonsynonymous SNV	"Nyap2:NM_001356397:exon4:c.A966G:p.I322M,Nyap2:NM_001356400:exon4:c.A966G:p.I322M,Nyap2:NM_001356398:exon5:c.A1062G:p.I354M,Nyap2:NM_001356399:exon5:c.A966G:p.I322M"	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.976829483	1	0.9991642	TAC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr1	82453791	12A2p6	cell line	sgMsh2	82453791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	52	0	0	NA	exonic	Col4a4	nonsynonymous SNV	Col4a4:NM_007735:exon47:c.T4771C:p.Y1591H	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.5198804	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	82715280	12A2p6	cell line	sgMsh2	82715280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	73	0	0	NA	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon48:c.A4285G:p.N1429D	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.000780585	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	84395636	12A2p6	cell line	sgMsh2	84395636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	345	0	0	NA	exonic	Dner	nonsynonymous SNV	Dner:NM_152915:exon11:c.G1834A:p.V612M	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9999859	ACC	nonsynonymous	CCCA	8	CCCACCCA	NA
M6_p20	chr1	84585349	12A2p6	cell line	sgMsh2	84585349	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	154	0	0	NA	exonic	Dner	synonymous SNV	Dner:NM_152915:exon2:c.G549A:p.G183G	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.916403	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr1	84766032	12A2p6	cell line	sgMsh2	84766032	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	242	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon10:c.T1553C:p.L518P	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.9760106	GAG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr1	84766068	12A2p6	cell line	sgMsh2	84766068	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	216	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon10:c.A1517G:p.H506R	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.408577717	3	0.9705727	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	119	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-84929848	5	3	2	0.93	4.367554902	NA	1	0.605822132	2	0.9924216	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Vardict	2	0.113	52	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-85027661-85662926	7.35797826	5.35797826	2	0.93	4.367554902	NA	1	0.530681402	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr1	85723148	12A2p6	cell line	sgMsh2	85723148	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	202	0	0	NA	exonic	A630001G21Rik	nonsynonymous SNV	A630001G21Rik:NM_177055:exon4:c.A359C:p.K120T	1qC5	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9864076	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	86130678	12A2p6	cell line	sgMsh2	86130678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	188	0	0	NA	exonic	Psmd1	synonymous SNV	Psmd1:NM_027357:exon21:c.A2430G:p.T810T	1qC5	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.43675549	3	0.7232754	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	87099527	12A2p6	cell line	sgMsh2	87099527	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	151	0	0	NA	exonic	Alpi	synonymous SNV	Alpi:NM_001081082:exon9:c.A1029C:p.T343T	1qC5	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.976829483	1	0.9999874	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	235	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	0.9999996	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	87918689	12A2p6	cell line	sgMsh2	87918689	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	55	0	0	NA	exonic	Dgkd	synonymous SNV	Dgkd:NM_177646:exon9:c.T1053C:p.V351V	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.602914	TTT	synonymous	T	5	TTTTT	NA
M6_p20	chr1	87949990	12A2p6	cell line	sgMsh2	87949990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	295	0	0	NA	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon26:c.A3176G:p.Q1059R,Usp40:NM_001198573:exon30:c.A3443G:p.Q1148R"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9912122	TTG	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr1	88247214	12A2p6	cell line	sgMsh2	88247214	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.019	1315	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon25:c.A2715G:p.Q905Q	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.089229616	3	1	AAC	synonymous	C	5	CCCCC	NA
M6_p20	chr1	89152266	12A2p6	cell line	sgMsh2	89152266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	125	0	0	NA	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon5:c.A2542G:p.T848A	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.727778	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	90807774	12A2p6	cell line	sgMsh2	90807774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	101	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon6:c.C2152T:p.L718L,Col6a3:NM_001243008:exon9:c.C3973T:p.L1325L"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.09475096	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr1	90822219	12A2p6	cell line	sgMsh2	90822219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	96	0	0	NA	exonic	Col6a3	nonsynonymous SNV	Col6a3:NM_001243008:exon4:c.T892C:p.Y298H	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.6066206	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	91420472	12A2p6	cell line	sgMsh2	91420472	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	157	0	0	NA	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon21:c.A3407T:p.D1136V	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9666522	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	91431044	12A2p6	cell line	sgMsh2	91431044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	132	0	0	NA	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon15:c.A1718C:p.E573A	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.969003	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	91435706	12A2p6	cell line	sgMsh2	91435706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	61	0	0	NA	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon10:c.T1091C:p.V364A	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.6394434	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	92888774	12A2p6	cell line	sgMsh2	92888774	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	exonic	Ankmy1	nonsynonymous SNV	"Ankmy1:NM_001347091:exon5:c.C617T:p.P206L,Ankmy1:NM_172850:exon5:c.C617T:p.P206L"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.399185125	3	0.8030651	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	141	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9153996	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	93310192	12A2p6	cell line	sgMsh2	93310192	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	72	0	0	NA	exonic	Pask	nonsynonymous SNV	Pask:NM_080850:exon18:c.T4052C:p.M1351T	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.09810584	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	340	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	3	1.07E-09	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	144	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9983995	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	93425296	12A2p6	cell line	sgMsh2	93425296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	77	0	0	NA	exonic	Hdlbp	nonsynonymous SNV	"Hdlbp:NM_001301364:exon12:c.C1483T:p.R495W,Hdlbp:NM_001357556:exon12:c.C1483T:p.R495W,Hdlbp:NM_133808:exon12:c.C1483T:p.R495W"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.998335	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	93500465	12A2p6	cell line	sgMsh2	93500465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	267	0	0	NA	exonic	Septin2	nonsynonymous SNV	"Septin2:NM_001159718:exon7:c.A482G:p.D161G,Septin2:NM_001159717:exon8:c.A602G:p.D201G,Septin2:NM_001159719:exon8:c.A602G:p.D201G,Septin2:NM_010891:exon8:c.A602G:p.D201G"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.7507191	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	206	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.403881421	3	0.9750909	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	94024961	12A2p6	cell line	sgMsh2	94024961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	136	0	0	NA	exonic	Neu4	synonymous SNV	"Neu4:NM_173772:exon4:c.T982C:p.L328L,Neu4:NM_001310769:exon5:c.T1051C:p.L351L"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.859422094	1	0.9942386	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	98466696	12A2p6	cell line	sgMsh2	98466696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	221	0	0	NA	exonic	Slco6d1	synonymous SNV	"Slco6d1:NM_001164233:exon7:c.A1104G:p.V368V,Slco6d1:NM_027584:exon7:c.A1104G:p.V368V"	1qD	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.99996	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	99967371	12A2p6	cell line	sgMsh2	99967371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	307	0	0	NA	exonic	Cntnap5b	stopgain	Cntnap5b:NM_172851:exon3:c.G367T:p.G123X	1qE1.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9999981	AGG	nonsynonymous	CAAG	8	CAAGCAAG	NA
M6_p20	chr1	104979041	12A2p6	cell line	sgMsh2	104979041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	402	0	0	NA	exonic	Cdh20	nonsynonymous SNV	Cdh20:NM_011800:exon10:c.A1592G:p.Y531C	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.999542	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	107515526	12A2p6	cell line	sgMsh2	107515526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	160	0	0	NA	exonic	Serpinb2	synonymous SNV	"Serpinb2:NM_001174170:exon2:c.G54A:p.Q18Q,Serpinb2:NM_011111:exon2:c.G54A:p.Q18Q"	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.9504804	AGA	synonymous	NA	NA	NA	NA
M6_p20	chr1	110908178	12A2p6	cell line	sgMsh2	110908178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	356	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon9:c.A1333G:p.N445D,Cdh19:NM_001356415:exon10:c.A1333G:p.N445D"	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9988759	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	110925087	12A2p6	cell line	sgMsh2	110925087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	272	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon7:c.T1117A:p.Y373N,Cdh19:NM_001356415:exon8:c.T1117A:p.Y373N"	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9998446	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	111859904	12A2p6	cell line	sgMsh2	111859904	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	229	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.G2900A:p.S967N	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9996757	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	111861067	12A2p6	cell line	sgMsh2	111861067	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	200	0	0	NA	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.C1737T:p.V579V	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.99504	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr1	111861198	12A2p6	cell line	sgMsh2	111861198	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	171	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.A1606G:p.I536V	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9994282	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	111861569	12A2p6	cell line	sgMsh2	111861569	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	156	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.T1235A:p.V412D	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9981725	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	111862676	12A2p6	cell line	sgMsh2	111862676	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	315	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.A128G:p.K43R	1qE2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9999929	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	116089370	12A2p6	cell line	sgMsh2	116089370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	268	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon5:c.T692C:p.L231P,Cntnap5a:NM_001371013:exon5:c.T692C:p.L231P"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	1.32E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Vardict	2	0.076	224	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.356918465	NA	NA	CAT	frameshift	T	5	TTTTT	1
M6_p20	chr1	116157474	12A2p6	cell line	sgMsh2	116157474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	466	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon8:c.C1141A:p.P381T,Cntnap5a:NM_001371013:exon8:c.C1144A:p.P382T"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.9684734	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	119527237	12A2p6	cell line	sgMsh2	119527237	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	306	0	0	NA	exonic	Tmem185b	nonsynonymous SNV	Tmem185b:NM_146103:exon1:c.T727C:p.Y243H	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9999997	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	279	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.9620021	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	120067734	12A2p6	cell line	sgMsh2	120067734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	158	0	0	NA	exonic	Tmem37	synonymous SNV	Tmem37:NM_019432:exon2:c.T612C:p.G204G	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.530681402	2	0.992492	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	120243991	12A2p6	cell line	sgMsh2	120243991	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	79	0	0	NA	exonic	Steap3	nonsynonymous SNV	"Steap3:NM_001379354:exon2:c.C269T:p.A90V,Steap3:NM_001379355:exon2:c.C299T:p.A100V,Steap3:NM_133186:exon2:c.C269T:p.A90V,Steap3:NM_001085409:exon3:c.C269T:p.A90V"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	9.60E-06	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	121306909	12A2p6	cell line	sgMsh2	121306909	A	-	Deletion	Mutect2;Vardict	2	0.093	189	0	0	NA	exonic	Insig2	frameshift deletion	"Insig2:NM_001271532:exon4:c.267delT:p.F89Lfs*4,Insig2:NM_001271531:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_001357251:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_133748:exon5:c.591delT:p.F197Lfs*4,Insig2:NM_178082:exon5:c.591delT:p.F197Lfs*4"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.43675549	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	146	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	0.9968586	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	123367622	12A2p6	cell line	sgMsh2	123367622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	35	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon19:c.A1688C:p.N563T	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.8653002	GTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr1	123445299	12A2p6	cell line	sgMsh2	123445299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	168	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon8:c.T611C:p.I204T	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999989	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.073	284	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	0.9999928	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	127	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.403881421	3	0.8811191	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	127551395	12A2p6	cell line	sgMsh2	127551395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	301	0	0	NA	exonic	Tmem163	nonsynonymous SNV	Tmem163:NM_028135:exon4:c.T386C:p.L129P	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.8033233	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	111	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9919521	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	128328161	12A2p6	cell line	sgMsh2	128328161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	62	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon1:c.C143T:p.P48L	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9819483	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	152	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9880074	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	129595408	12A2p6	cell line	sgMsh2	129595408	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	128	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon3:c.G178A:p.G60R	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9961064	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	362	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.300562918	3	1.73E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	312	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.309955509	3	4.51E-08	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	130841561	12A2p6	cell line	sgMsh2	130841561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	exonic	Pigr	synonymous SNV	Pigr:NM_011082:exon3:c.T108C:p.V36V	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.9902016	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	130844450	12A2p6	cell line	sgMsh2	130844450	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	195	0	0	NA	exonic	Pigr	nonsynonymous SNV	Pigr:NM_011082:exon4:c.G404T:p.S135I	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	3	0.9999979	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	75	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9595517	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M6_p20	chr1	132023625	12A2p6	cell line	sgMsh2	132023625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	177	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376959:exon4:c.T397A:p.F133I,Elk4:NM_001376954:exon5:c.T1267A:p.F423I,Elk4:NM_001376955:exon5:c.T1267A:p.F423I,Elk4:NM_001376956:exon5:c.T1267A:p.F423I,Elk4:NM_007923:exon5:c.T1267A:p.F423I,Elk4:NM_001376957:exon6:c.T1267A:p.F423I,Elk4:NM_001376958:exon6:c.T1267A:p.F423I"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9987541	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.158	65	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5358729	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr1	132938193	12A2p6	cell line	sgMsh2	132938193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	251	0	0	NA	exonic	Lrrn2	nonsynonymous SNV	Lrrn2:NM_010732:exon2:c.A995G:p.H332R	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999519	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	133639049	12A2p6	cell line	sgMsh2	133639049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	189	0	0	NA	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon6:c.G493A:p.D165N,Zc3h11a:NM_144530:exon6:c.G493A:p.D165N,Zc3h11a:NM_001276767:exon7:c.G493A:p.D165N"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	8.17E-08	TCT	nonsynonymous	TCA	17	TCATCTTCATCATCATC	NA
M6_p20	chr1	133657321	12A2p6	cell line	sgMsh2	133657321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	169	0	0	NA	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T2277C:p.S759S	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.8445326	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	133658840	12A2p6	cell line	sgMsh2	133658840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	174	0	0	NA	exonic	Zbed6	nonsynonymous SNV	Zbed6:NM_001166552:exon1:c.A758C:p.N253T	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9985998	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	133729924	12A2p6	cell line	sgMsh2	133729924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	309	0	0	NA	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon11:c.A1827G:p.E609E,Atp2b4:NM_213616:exon11:c.A1827G:p.E609E"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9999787	CTT	synonymous	TCCT	9	TCCTTCCTT	NA
M6_p20	chr1	133739185	12A2p6	cell line	sgMsh2	133739185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon3:c.A627G:p.G209G,Atp2b4:NM_213616:exon3:c.A627G:p.G209G"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9836834	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr1	133903690	12A2p6	cell line	sgMsh2	133903690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	391	0	0	NA	exonic	Optc	synonymous SNV	"Optc:NM_001160421:exon3:c.A477G:p.V159V,Optc:NM_001160422:exon3:c.A477G:p.V159V,Optc:NM_054076:exon3:c.A477G:p.V159V,Optc:NM_001160420:exon4:c.A477G:p.V159V"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9999685	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr1	134300497	12A2p6	cell line	sgMsh2	134300497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	152	0	0	NA	exonic	Ppfia4	synonymous SNV	"Ppfia4:NM_001144855:exon26:c.C3300A:p.A1100A,Ppfia4:NM_001374777:exon27:c.C3300A:p.A1100A"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999961	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr1	134355657	12A2p6	cell line	sgMsh2	134355657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	129	0	0	NA	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon4:c.T424C:p.Y142H,Tmem183a:NM_020588:exon4:c.T427C:p.Y143H"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.6962121	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	135167045	12A2p6	cell line	sgMsh2	135167045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	exonic	Gpr37l1	nonsynonymous SNV	Gpr37l1:NM_134438:exon1:c.A460G:p.I154V	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9674695	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	135309143	12A2p6	cell line	sgMsh2	135309143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	120	0	0	NA	exonic	Timm17a	nonsynonymous SNV	"Timm17a:NM_001360857:exon3:c.A116G:p.Q39R,Timm17a:NM_011590:exon3:c.A182G:p.Q61R"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.8244972	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	135405832	12A2p6	cell line	sgMsh2	135405832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	176	0	0	NA	exonic	Ipo9	nonsynonymous SNV	"Ipo9:NM_153774:exon10:c.A1111G:p.T371A,Ipo9:NM_001357575:exon11:c.A1003G:p.T335A,Ipo9:NM_001357576:exon11:c.A658G:p.T220A,Ipo9:NM_001357578:exon11:c.A265G:p.T89A,Ipo9:NM_001357577:exon12:c.A658G:p.T220A"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9994163	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2	2	0.068	191	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.3193481	3	0.9999198	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2	2	0.068	191	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.3193481	3	0.9999198	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	136165026	12A2p6	cell line	sgMsh2	136165026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	218	0	0	NA	exonic	Kif21b	nonsynonymous SNV	Kif21b:NM_001039472:exon27:c.A3704C:p.D1235A	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9997469	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	136625870	12A2p6	cell line	sgMsh2	136625870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	150	0	0	NA	exonic	Zfp281	synonymous SNV	"Zfp281:NM_001160251:exon2:c.A585G:p.L195L,Zfp281:NM_177643:exon2:c.A585G:p.L195L"	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.5259048	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	139236840	12A2p6	cell line	sgMsh2	139236840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	155	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon9:c.T3728C:p.F1243S	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.7368343	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	139423488	12A2p6	cell line	sgMsh2	139423488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	261	0	0	NA	exonic	Zbtb41	nonsynonymous SNV	Zbtb41:NM_172643:exon2:c.A338G:p.Y113C	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.8865999	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	139478372	12A2p6	cell line	sgMsh2	139478372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	157	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.T4996C:p.Y1666H	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9865503	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	139478536	12A2p6	cell line	sgMsh2	139478536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	179	0	0	NA	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon18:c.T5160C:p.C1720C	1qE4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.09335512	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr1	139492825	12A2p6	cell line	sgMsh2	139492825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	176	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon27:c.T9215C:p.V3072A	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.99749	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	139698220	12A2p6	cell line	sgMsh2	139698220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	270	0	0	NA	exonic	Gm4788	nonsynonymous SNV	"Gm4788:NM_001160304:exon14:c.A2338G:p.I780V,Gm4788:NM_001029977:exon15:c.A2515G:p.I839V,Gm4788:NM_001160303:exon15:c.A2512G:p.I838V"	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.9999998	ATA	nonsynonymous	AATA	8	AATAAATA	NA
M6_p20	chr1	139733178	12A2p6	cell line	sgMsh2	139733178	T	-	Deletion	Mutect2;Vardict	2	0.211	173	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon11:c.1771delA:p.R591Gfs*31,Gm4788:NM_001160303:exon11:c.1768delA:p.R590Gfs*31,Gm4788:NM_001160304:exon11:c.1771delA:p.R591Gfs*31"	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.99091837	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	502	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.403881421	3	0.99995	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	140484198	12A2p6	cell line	sgMsh2	140484198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	190	0	0	NA	exonic	Kcnt2	synonymous SNV	Kcnt2:NM_001081027:exon14:c.A1368G:p.T456T	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	0.9999959	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	140518870	12A2p6	cell line	sgMsh2	140518870	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	445	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon18:c.G2002A:p.A668T	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.338133283	3	3.73E-09	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	253	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.309955509	3	0.9999988	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	149857649	12A2p6	cell line	sgMsh2	149857649	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	192	0	0	NA	exonic	Pla2g4a	nonsynonymous SNV	"Pla2g4a:NM_001305632:exon13:c.A1348C:p.S450R,Pla2g4a:NM_008869:exon14:c.A1372C:p.S458R"	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9983815	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150104474	12A2p6	cell line	sgMsh2	150104474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	208	0	0	NA	exonic	Ptgs2	nonsynonymous SNV	Ptgs2:NM_011198:exon8:c.T1162C:p.Y388H	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.9312396	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150333395	12A2p6	cell line	sgMsh2	150333395	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	234	0	0	NA	exonic	Pdc	nonsynonymous SNV	"Pdc:NM_001159730:exon4:c.T628C:p.F210L,Pdc:NM_024458:exon4:c.T628C:p.F210L"	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	6.05E-09	ATT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr1	150428159	12A2p6	cell line	sgMsh2	150428159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	197	0	0	NA	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon31:c.T4282C:p.Y1428H	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.953344	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150573530	12A2p6	cell line	sgMsh2	150573530	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.112	365	0	0	NA	exonic	Hmcn1	stopgain	Hmcn1:NM_001024720:exon105:c.C16357T:p.Q5453X	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9999426	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150573532	12A2p6	cell line	sgMsh2	150573532	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.112	365	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon105:c.A16355T:p.Y5452F	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9999426	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150652555	12A2p6	cell line	sgMsh2	150652555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	321	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon64:c.A9841G:p.R3281G	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9996663	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	150686813	12A2p6	cell line	sgMsh2	150686813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	195	0	0	NA	exonic	Hmcn1	frameshift deletion	Hmcn1:NM_001024720:exon45:c.6993delC:p.L2332fs*0	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.699748043	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6_p20	chr1	150723488	12A2p6	cell line	sgMsh2	150723488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	164	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon31:c.T4676C:p.L1559S	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.450844377	2	0.529419	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	247	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9983236	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	151411279	12A2p6	cell line	sgMsh2	151411279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	78	0	0	NA	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon6:c.T461G:p.I154S	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.09241029	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	151420172	12A2p6	cell line	sgMsh2	151420172	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	exonic	Swt1	synonymous SNV	Swt1:NM_025819:exon4:c.G153A:p.K51K	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.999292	CCT	synonymous	T	5	TTTTT	NA
M6_p20	chr1	151433827	12A2p6	cell line	sgMsh2	151433827	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	133	0	0	NA	exonic	Trmt1l	nonsynonymous SNV	"Trmt1l:NM_001357569:exon2:c.A260G:p.D87G,Trmt1l:NM_026876:exon2:c.A260G:p.D87G"	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.9718246	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	151453933	12A2p6	cell line	sgMsh2	151453933	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	253	0	0	NA	exonic	Trmt1l	nonsynonymous SNV	"Trmt1l:NM_001357569:exon12:c.A1626T:p.E542D,Trmt1l:NM_001357570:exon12:c.A822T:p.E274D,Trmt1l:NM_026876:exon12:c.A1626T:p.E542D"	1qG1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9991094	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	238	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	153154408	12A2p6	cell line	sgMsh2	153154408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	168	0	0	NA	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon5:c.G487A:p.G163R	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9995174	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	153448923	12A2p6	cell line	sgMsh2	153448923	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	207	0	0	NA	exonic	Shcbp1l	nonsynonymous SNV	Shcbp1l:NM_001033162:exon9:c.C1568A:p.P523H	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9797509	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	186	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.989664	AAG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr1	155129292	12A2p6	cell line	sgMsh2	155129292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	265	0	0	NA	exonic	Mr1	nonsynonymous SNV	"Mr1:NM_001355062:exon6:c.T788C:p.V263A,Mr1:NM_001355063:exon6:c.T665C:p.V222A,Mr1:NM_008209:exon6:c.T1001C:p.V334A"	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.7787738	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	155146647	12A2p6	cell line	sgMsh2	155146647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	258	0	0	NA	exonic	Mr1	nonsynonymous SNV	Mr1:NM_008209:exon1:c.A40C:p.K14Q	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.6145552	TTC	nonsynonymous	GCTTC	10	GCTTCGCTTC	NA
M6_p20	chr1	155217499	12A2p6	cell line	sgMsh2	155217499	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	exonic	BC034090	nonsynonymous SNV	BC034090:NM_001370865:exon9:c.A3298G:p.T1100A	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.8446692	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	155933429	12A2p6	cell line	sgMsh2	155933429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	98	0	0	NA	exonic	Cep350	nonsynonymous SNV	Cep350:NM_001039184:exon10:c.A1400G:p.E467G	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996953	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	155959745	12A2p6	cell line	sgMsh2	155959745	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	470	0	0	NA	exonic	Cep350	synonymous SNV	Cep350:NM_001039184:exon4:c.T204C:p.S68S	1qG3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	1.22E-09	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	158572975	12A2p6	cell line	sgMsh2	158572975	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	368	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon9:c.A1571G:p.Q524R,Astn1:NM_007495:exon9:c.A1547G:p.Q516R"	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.998617	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	158657301	12A2p6	cell line	sgMsh2	158657301	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	69	0	0	NA	exonic	Astn1	frameshift deletion	"Astn1:NM_001205204:exon17:c.2957delC:p.Q987Rfs*8,Astn1:NM_007495:exon17:c.2933delC:p.Q979Rfs*8"	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.756103591	NA	NA	ACC	frameshift	NA	NA	NA	-1
M6_p20	chr1	158717047	12A2p6	cell line	sgMsh2	158717047	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	138	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon22:c.A5210G:p.D1737G	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9987112	ATC	nonsynonymous	ACCA	8	ACCAACCA	NA
M6_p20	chr1	158848221	12A2p6	cell line	sgMsh2	158848221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	128	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon8:c.T2954C:p.I985T	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.8374413	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	158936643	12A2p6	cell line	sgMsh2	158936643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	213	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon3:c.G1297A:p.A433T	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.507199924	2	0.988709	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	158936779	12A2p6	cell line	sgMsh2	158936779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	210	0	0	NA	exonic	Pappa2	synonymous SNV	Pappa2:NM_001085376:exon3:c.T1161C:p.A387A	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9753041	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	159278090	12A2p6	cell line	sgMsh2	159278090	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	289	0	0	NA	exonic	Cop1	nonsynonymous SNV	"Cop1:NM_001360878:exon9:c.A964T:p.S322C,Cop1:NM_011931:exon9:c.A976T:p.S326C"	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9936537	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	159851961	12A2p6	cell line	sgMsh2	159851961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	140	0	0	NA	exonic	Tnr	synonymous SNV	Tnr:NM_022312:exon4:c.A504G:p.Q168Q	1qH1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9964054	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	370	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.9999988	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	161157126	12A2p6	cell line	sgMsh2	161157126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	460	0	0	NA	exonic	Tex50	synonymous SNV	Tex50:NM_001195189:exon2:c.T543C:p.T181T	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	4.18E-08	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr1	161970451	12A2p6	cell line	sgMsh2	161970451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	197	0	0	NA	exonic	Pigc	nonsynonymous SNV	"Pigc:NM_001039045:exon2:c.A1G:p.M1V,Pigc:NM_026078:exon2:c.A1G:p.M1V"	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.929866528	1	0.9999922	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	162545775	12A2p6	cell line	sgMsh2	162545775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	167	0	0	NA	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T906C:p.I302I	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9731895	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr1	162546462	12A2p6	cell line	sgMsh2	162546462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	231	0	0	NA	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T219C:p.D73D	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.8510445	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	162794363	12A2p6	cell line	sgMsh2	162794363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	123	0	0	NA	exonic	Fmo4	synonymous SNV	Fmo4:NM_144878:exon9:c.A1278G:p.K426K	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9878825	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	162955215	12A2p6	cell line	sgMsh2	162955215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	481	0	0	NA	exonic	Fmo3	nonsynonymous SNV	Fmo3:NM_008030:exon8:c.A1232C:p.E411A	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	1.04E-08	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	163952152	12A2p6	cell line	sgMsh2	163952152	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	65	0	0	NA	exonic	Scyl3	nonsynonymous SNV	"Scyl3:NM_001286002:exon13:c.A1648C:p.T550P,Scyl3:NM_001286003:exon13:c.A1003C:p.T335P,Scyl3:NM_001357426:exon13:c.A1003C:p.T335P,Scyl3:NM_028776:exon13:c.A1687C:p.T563P"	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9360628	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	405	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	164217413	12A2p6	cell line	sgMsh2	164217413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	297	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon24:c.A6269G:p.K2090R	1qH2.2	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.09370936	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	165336829	12A2p6	cell line	sgMsh2	165336829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	98	0	0	NA	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon17:c.A2376G:p.L792L	1qH2.2	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.9851133	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr1	165351045	12A2p6	cell line	sgMsh2	165351045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	202	0	0	NA	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon14:c.T1914C:p.H638H	1qH2.2	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9723927	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	183	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999997	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	165551108	12A2p6	cell line	sgMsh2	165551108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	240	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon20:c.T977C:p.M326T,Adcy10:NM_173029:exon20:c.T2465C:p.M822T"	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.999821	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	165875869	12A2p6	cell line	sgMsh2	165875869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	58	0	0	NA	exonic	Pou2f1	nonsynonymous SNV	"Pou2f1:NM_198932:exon16:c.G2179T:p.G727W,Pou2f1:NM_198933:exon16:c.G2146T:p.G716W,Pou2f1:NM_001368808:exon17:c.G2182T:p.G728W,Pou2f1:NM_011137:exon17:c.G2251T:p.G751W,Pou2f1:NM_198934:exon17:c.G2218T:p.G740W"	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.9922977	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	166165176	12A2p6	cell line	sgMsh2	166165176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	133	0	0	NA	exonic	Gpa33	nonsynonymous SNV	"Gpa33:NM_001360925:exon6:c.A533G:p.K178R,Gpa33:NM_021610:exon7:c.A857G:p.K286R"	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.9883365	AAG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	139	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9481321	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	167229990	12A2p6	cell line	sgMsh2	167229990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	89	0	0	NA	exonic	Uck2	nonsynonymous SNV	Uck2:NM_030724:exon5:c.T500C:p.V167A	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9901668	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	69	0	0	NA	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9429451	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	167846641	12A2p6	cell line	sgMsh2	167846641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	258	0	0	NA	exonic	Lmx1a	synonymous SNV	Lmx1a:NM_033652:exon8:c.A1029G:p.T343T	1qH2.3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999932	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	169998156	12A2p6	cell line	sgMsh2	169998156	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.155	82	0	0	NA	exonic	Ddr2	nonsynonymous SNV	Ddr2:NM_022563:exon8:c.T874C:p.F292L	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	7.20E-05	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	170867653	12A2p6	cell line	sgMsh2	170867653	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	56	0	0	NA	exonic	Atf6	nonsynonymous SNV	Atf6:NM_001081304:exon1:c.T49A:p.W17R	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.5973626	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	170907874	12A2p6	cell line	sgMsh2	170907874	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	14	0	0	NA	exonic	Fcrlb	nonsynonymous SNV	Fcrlb:NM_001029984:exon5:c.C830A:p.P277Q	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	1	0.7804278	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	170912927	12A2p6	cell line	sgMsh2	170912927	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	130	0	0	NA	exonic	Fcrlb	synonymous SNV	Fcrlb:NM_001029984:exon1:c.A15T:p.A5A	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.6652638	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	171054004	12A2p6	cell line	sgMsh2	171054004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	613	0	0	NA	exonic	Fcgr3	nonsynonymous SNV	"Fcgr3:NM_001356511:exon4:c.A551G:p.Y184C,Fcgr3:NM_010188:exon4:c.A554G:p.Y185C"	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.530681402	2	4.12E-08	GTA	nonsynonymous	AGT	9	AGTAGTAGT	NA
M6_p20	chr1	171236387	12A2p6	cell line	sgMsh2	171236387	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Ndufs2	stopgain	Ndufs2:NM_153064:exon11:c.T1266A:p.C422X	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9958467	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	240	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	1	4.11E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172119922	12A2p6	cell line	sgMsh2	172119922	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	0	0	NA	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon31:c.A3304C:p.I1102L	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.999987	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172165917	12A2p6	cell line	sgMsh2	172165917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	176	0	0	NA	exonic	Dcaf8	synonymous SNV	"Dcaf8:NM_001357204:exon3:c.T51C:p.N17N,Dcaf8:NM_153555:exon3:c.T51C:p.N17N"	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9707157	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	172172887	12A2p6	cell line	sgMsh2	172172887	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	183	0	0	NA	exonic	Dcaf8	nonsynonymous SNV	"Dcaf8:NM_001357204:exon4:c.G611A:p.S204N,Dcaf8:NM_153555:exon4:c.G611A:p.S204N"	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9680275	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172244047	12A2p6	cell line	sgMsh2	172244047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	65	0	0	NA	exonic	Atp1a4	nonsynonymous SNV	Atp1a4:NM_013734:exon11:c.A1480T:p.N494Y	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	1	1	0.9956145	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172290712	12A2p6	cell line	sgMsh2	172290712	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	231	0	0	NA	exonic	Atp1a2	nonsynonymous SNV	Atp1a2:NM_178405:exon5:c.A394T:p.I132F	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	0.5743925	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	77	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.845333207	1	0.9337554	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	172584444	12A2p6	cell line	sgMsh2	172584444	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.106	241	0	0	NA	exonic	Slamf8	nonsynonymous SNV	Slamf8:NM_029084:exon3:c.T563C:p.L188P	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9840078	CAG	nonsynonymous	CCCAGT	12	CCCAGTCCCAGT	NA
M6_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	513	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	2.84E-09	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	173203457	12A2p6	cell line	sgMsh2	173203457	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	271	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.A100C:p.T34P	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.272385144	3	1.07E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	173204097	12A2p6	cell line	sgMsh2	173204097	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	261	0	0	NA	exonic	Olfr218	nonsynonymous SNV	Olfr218:NM_001001809:exon1:c.C740G:p.T247S	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.427362899	3	0.9253975	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	376	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;MuSe;Vardict	3	0.065	407	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.305259214	3	1.10E-09	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	173638983	12A2p6	cell line	sgMsh2	173638983	G	A	SNV	Mutect2;Vardict	2	0.098	87	0	0	NA	exonic	Ifi209	nonsynonymous SNV	Ifi209:NM_175026:exon3:c.G380A:p.R127K	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.460236968	2	0.6648251	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	246	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999972	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	174028199	12A2p6	cell line	sgMsh2	174028199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	191	0	0	NA	exonic	Ifi205	synonymous SNV	Ifi205:NM_172648:exon2:c.A264G:p.E88E	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.8892257	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr1	174250568	12A2p6	cell line	sgMsh2	174250568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	168	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.T358C:p.F120L	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.7986961	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	174836908	12A2p6	cell line	sgMsh2	174836908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	73	0	0	NA	exonic	Grem2	nonsynonymous SNV	Grem2:NM_011825:exon2:c.C374T:p.P125L	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9233426	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	218	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.9980408	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	175705958	12A2p6	cell line	sgMsh2	175705958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	190	0	0	NA	exonic	Wdr64	synonymous SNV	Wdr64:NM_029453:exon2:c.T159C:p.Y53Y	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.8468326	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr1	175785577	12A2p6	cell line	sgMsh2	175785577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	306	0	0	NA	exonic	Wdr64	nonsynonymous SNV	Wdr64:NM_029453:exon16:c.T2047C:p.W683R	1qH3	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.8584313	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	175899449	12A2p6	cell line	sgMsh2	175899449	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	155	0	0	NA	exonic	Exo1	frameshift deletion	Exo1:NM_012012:exon11:c.1325delA:p.N443Mfs*34	1qH4	chr1-85663222-176090204	5	3	2	0.93	4.367554902	NA	1	0.854725798	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr1	176274706	12A2p6	cell line	sgMsh2	176274706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	28	0	0	NA	exonic	Pld5	nonsynonymous SNV	Pld5:NM_176916:exon1:c.A169G:p.R57G	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	2	1	1	0.9189909	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	177752925	12A2p6	cell line	sgMsh2	177752925	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	193	0	0	NA	exonic	1700016C15Rik	nonsynonymous SNV	1700016C15Rik:NM_027077:exon5:c.G335A:p.R112Q	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9624815	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	179423384	12A2p6	cell line	sgMsh2	179423384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	514	0	0	NA	exonic	Smyd3	nonsynonymous SNV	Smyd3:NM_027188:exon2:c.A199G:p.I67V	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	179529275	12A2p6	cell line	sgMsh2	179529275	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	25	0	0	NA	exonic	Tfb2m	nonsynonymous SNV	"Tfb2m:NM_001331054:exon7:c.C1030A:p.P344T,Tfb2m:NM_001331055:exon7:c.C679A:p.P227T,Tfb2m:NM_008249:exon8:c.C1093A:p.P365T"	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	1	0.898846	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	180067347	12A2p6	cell line	sgMsh2	180067347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	364	0	0	NA	exonic	Cdc42bpa	nonsynonymous SNV	"Cdc42bpa:NM_001033285:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346804:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346805:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359541:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359542:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359543:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359544:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359545:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359546:exon9:c.G884A:p.S295N,Cdc42bpa:NM_001359547:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359548:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359549:exon9:c.G779A:p.S260N"	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.535377698	2	0.9999838	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	180144741	12A2p6	cell line	sgMsh2	180144741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	223	0	0	NA	exonic	Cdc42bpa	synonymous SNV	"Cdc42bpa:NM_001346805:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001359544:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001346804:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359541:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359545:exon29:c.T4008C:p.S1336S,Cdc42bpa:NM_001033285:exon30:c.T4107C:p.S1369S,Cdc42bpa:NM_001359543:exon30:c.T4116C:p.S1372S,Cdc42bpa:NM_001359549:exon30:c.T3696C:p.S1232S,Cdc42bpa:NM_001359542:exon31:c.T4155C:p.S1385S,Cdc42bpa:NM_001359546:exon31:c.T3900C:p.S1300S,Cdc42bpa:NM_001359548:exon31:c.T3804C:p.S1268S,Cdc42bpa:NM_001359547:exon32:c.T3843C:p.S1281S"	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9992233	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	135	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9949097	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	180965639	12A2p6	cell line	sgMsh2	180965639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	86	0	0	NA	exonic	Tmem63a	nonsynonymous SNV	Tmem63a:NM_144794:exon15:c.T1474C:p.W492R	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.09281308	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	181054895	12A2p6	cell line	sgMsh2	181054895	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	140	0	0	NA	exonic	9130409I23Rik	frameshift deletion	9130409I23Rik:NM_001033819:exon2:c.221delA:p.Y74Lfs*10	1qH4	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.87351098	NA	NA	TAT	frameshift	NA	NA	NA	-1
M6_p20	chr1	181816916	12A2p6	cell line	sgMsh2	181816916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	112	0	0	NA	exonic	Lbr	nonsynonymous SNV	Lbr:NM_133815:exon14:c.T1823C:p.L608P	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.6678277	CAG	nonsynonymous	CCAGG	12	CCAGGCCAGGCC	NA
M6_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	46	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.8478593	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr1	182973202	12A2p6	cell line	sgMsh2	182973202	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	199	0	0	NA	exonic	Tlr5	nonsynonymous SNV	Tlr5:NM_016928:exon4:c.G70T:p.G24C	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9742881	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	184944834	12A2p6	cell line	sgMsh2	184944834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	194	0	0	NA	exonic	Mark1	nonsynonymous SNV	"Mark1:NM_001378876:exon2:c.A218G:p.K73R,Mark1:NM_145515:exon2:c.A218G:p.K73R"	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	0.9837084	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	185258613	12A2p6	cell line	sgMsh2	185258613	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	161	0	0	NA	exonic	Rab3gap2	synonymous SNV	Rab3gap2:NM_001163754:exon19:c.G1983A:p.P661P	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.239511075	3	0.9999969	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr1	186625518	12A2p6	cell line	sgMsh2	186625518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	215	0	0	NA	exonic	Tgfb2	nonsynonymous SNV	"Tgfb2:NM_009367:exon7:c.A1175G:p.Y392C,Tgfb2:NM_001329107:exon8:c.A1259G:p.Y420C"	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.7411705	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	188066447	12A2p6	cell line	sgMsh2	188066447	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	52	0	0	NA	exonic	Esrrg	nonsynonymous SNV	"Esrrg:NM_011935:exon3:c.G579A:p.M193I,Esrrg:NM_001243792:exon4:c.G510A:p.M170I,Esrrg:NM_001357534:exon4:c.G510A:p.M170I,Esrrg:NM_001357535:exon4:c.G510A:p.M170I,Esrrg:NM_001357536:exon4:c.G528A:p.M176I"	1qH5	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.000626655	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	175	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9969805	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	188948540	12A2p6	cell line	sgMsh2	188948540	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	117	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon66:c.A14714T:p.E4905V	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	7.04E-07	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	191013388	12A2p6	cell line	sgMsh2	191013388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	168	0	0	NA	exonic	Flvcr1	synonymous SNV	"Flvcr1:NM_001313747:exon3:c.T645C:p.N215N,Flvcr1:NM_001081259:exon4:c.T1083C:p.N361N"	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.7070801	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr1	191058906	12A2p6	cell line	sgMsh2	191058906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	191	0	0	NA	exonic	Tatdn3	nonsynonymous SNV	"Tatdn3:NM_001163421:exon4:c.A170G:p.N57S,Tatdn3:NM_001163422:exon4:c.A170G:p.N57S,Tatdn3:NM_001357166:exon4:c.A170G:p.N57S,Tatdn3:NM_026895:exon4:c.A170G:p.N57S"	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9961037	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.26	50	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M6_p20	chr1	191164343	12A2p6	cell line	sgMsh2	191164343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	320	0	0	NA	exonic	Fam71a	synonymous SNV	Fam71a:NM_001109759:exon1:c.A102G:p.L34L	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9999958	GTA	synonymous	CTG	9	CTGCTGCTG	NA
M6_p20	chr1	191356936	12A2p6	cell line	sgMsh2	191356936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	247	0	0	NA	exonic	Ppp2r5a	nonsynonymous SNV	Ppp2r5a:NM_144880:exon7:c.T824C:p.V275A	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999523	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	192846378	12A2p6	cell line	sgMsh2	192846378	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	95	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.A1129T:p.M377L,Sertad4:NM_198247:exon4:c.A1129T:p.M377L"	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	1	0.9996116	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	193240306	12A2p6	cell line	sgMsh2	193240306	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	231	0	0	NA	exonic	Hsd11b1	nonsynonymous SNV	"Hsd11b1:NM_001044751:exon4:c.G442A:p.V148M,Hsd11b1:NM_008288:exon5:c.G442A:p.V148M"	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.9999957	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	194780562	12A2p6	cell line	sgMsh2	194780562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	232	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon13:c.A2636G:p.H879R	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.999989	CAT	nonsynonymous	CCAT	8	CCATCCAT	NA
M6_p20	chr1	194796987	12A2p6	cell line	sgMsh2	194796987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	117	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon21:c.A3955G:p.T1319A	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999345	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	194806431	12A2p6	cell line	sgMsh2	194806431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	60	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon28:c.A5014G:p.M1672V	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.000732844	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr1	194812106	12A2p6	cell line	sgMsh2	194812106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	155	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon32:c.A5630G:p.Q1877R	1qH6	chr1-176139660-195166209	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999926	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	102	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.8784814	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	3919204	12A2p6	cell line	sgMsh2	3919204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	282	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon4:c.A578G:p.K193R,Plekhg1:NM_001159942:exon5:c.A578G:p.K193R"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.9988311	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	73	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.009942981	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	4411680	12A2p6	cell line	sgMsh2	4411680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	189	0	0	NA	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon9:c.A992G:p.Q331R,Rmnd1:NM_001358796:exon10:c.A992G:p.Q331R"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.441451786	3	7.55E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	4418620	12A2p6	cell line	sgMsh2	4418620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	300	0	0	NA	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon5:c.A628G:p.I210V,Rmnd1:NM_001358796:exon6:c.A628G:p.I210V"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.94865171	1	4.09E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	166	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.9998328	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	4512797	12A2p6	cell line	sgMsh2	4512797	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	124	0	0	NA	exonic	Ccdc170	nonsynonymous SNV	"Ccdc170:NM_001195672:exon2:c.C94G:p.L32V,Ccdc170:NM_001370992:exon2:c.C112G:p.L38V,Ccdc170:NM_001370993:exon2:c.C112G:p.L38V"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9996019	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	5022126	12A2p6	cell line	sgMsh2	5022126	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	23	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon17:c.A2731T:p.I911F,Syne1:NM_001079686:exon55:c.A8914T:p.I2972F,Syne1:NM_001347711:exon146:c.A26317T:p.I8773F,Syne1:NM_001347732:exon146:c.A26281T:p.I8761F"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	1	0.8829861	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	5204117	12A2p6	cell line	sgMsh2	5204117	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	62	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon89:c.C17122A:p.L5708M,Syne1:NM_001347732:exon89:c.C17101A:p.L5701M"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.994416	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	5799603	12A2p6	cell line	sgMsh2	5799603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	52	0	0	NA	exonic	Fbxo5	nonsynonymous SNV	Fbxo5:NM_025995:exon5:c.A1234G:p.K412E	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9875423	TTA	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr10	6890590	12A2p6	cell line	sgMsh2	6890590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	129	0	0	NA	exonic	Ipcef1	nonsynonymous SNV	"Ipcef1:NM_001170800:exon9:c.T1106C:p.M369T,Ipcef1:NM_001347225:exon9:c.T1118C:p.M373T"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.7806181	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	9809188	12A2p6	cell line	sgMsh2	9809188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	74	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon15:c.A1467C:p.K489N	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9967406	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	262	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	10689376	12A2p6	cell line	sgMsh2	10689376	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.154	37	0	0	NA	exonic	Grm1	nonsynonymous SNV	Grm1:NM_016976:exon9:c.A3187T:p.T1063S	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.006672328	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	208	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.9940525	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	196	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9972717	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	12421645	12A2p6	cell line	sgMsh2	12421645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	298	0	0	NA	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon65:c.T9440G:p.L3147R	10qA1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	1.03E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	12941485	12A2p6	cell line	sgMsh2	12941485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	160	0	0	NA	exonic	Stx11	nonsynonymous SNV	"Stx11:NM_001163590:exon2:c.T494C:p.L165P,Stx11:NM_001163591:exon2:c.T494C:p.L165P,Stx11:NM_029075:exon3:c.T494C:p.L165P"	10qA2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.967436892	1	0.9999896	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	152	0	0	NA	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6673017	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	129	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.6629315	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	100	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9766453	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	18473025	12A2p6	cell line	sgMsh2	18473025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	163	0	0	NA	exonic	Nhsl1	nonsynonymous SNV	"Nhsl1:NM_001163592:exon2:c.G165T:p.E55D,Nhsl1:NM_173390:exon2:c.G309T:p.E103D"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999984	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	52	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.967436892	1	0.978951	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	102	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	1	0.9997796	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	20357669	12A2p6	cell line	sgMsh2	20357669	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	120	0	0	NA	exonic	Mtfr2	nonsynonymous SNV	Mtfr2:NM_027930:exon6:c.A983C:p.N328T	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9624018	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	21072555	12A2p6	cell line	sgMsh2	21072555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	88	0	0	NA	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001177776:exon5:c.A277G:p.K93E,Ahi1:NM_001358561:exon21:c.A2965G:p.K989E,Ahi1:NM_026203:exon22:c.A2992G:p.K998E"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5307218	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	21074448	12A2p6	cell line	sgMsh2	21074448	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001177776:exon6:c.C397T:p.P133S,Ahi1:NM_001358561:exon22:c.C3085T:p.P1029S,Ahi1:NM_026203:exon23:c.C3112T:p.P1038S"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9948479	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	21156376	12A2p6	cell line	sgMsh2	21156376	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	305	0	0	NA	exonic	Myb	synonymous SNV	"Myb:NM_001198914:exon2:c.G105A:p.K35K,Myb:NM_010848:exon2:c.G105A:p.K35K"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.8670112	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr10	21382316	12A2p6	cell line	sgMsh2	21382316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	157	0	0	NA	exonic	Aldh8a1	nonsynonymous SNV	Aldh8a1:NM_178713:exon3:c.C311T:p.T104I	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9973241	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	23157368	12A2p6	cell line	sgMsh2	23157368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	93	0	0	NA	exonic	Eya4	nonsynonymous SNV	"Eya4:NM_001347372:exon8:c.A539G:p.K180R,Eya4:NM_010167:exon8:c.A539G:p.K180R"	10qA3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9995434	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.953348005	1	0.99782	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	24596360	12A2p6	cell line	sgMsh2	24596360	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.145	150	0	0	NA	exonic	Ccn2	synonymous SNV	Ccn2:NM_010217:exon3:c.A300G:p.A100A	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.940797	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	24596386	12A2p6	cell line	sgMsh2	24596386	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.159	163	0	0	NA	exonic	Ccn2	nonsynonymous SNV	Ccn2:NM_010217:exon3:c.A326G:p.Y109C	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5878774	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	142	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9898412	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	28465801	12A2p6	cell line	sgMsh2	28465801	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	194	0	0	NA	exonic	Ptprk	nonsynonymous SNV	"Ptprk:NM_001359355:exon8:c.G1203T:p.Q401H,Ptprk:NM_001359356:exon8:c.G1203T:p.Q401H,Ptprk:NM_008983:exon8:c.G1203T:p.Q401H"	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9997178	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	28587027	12A2p6	cell line	sgMsh2	28587027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	173	0	0	NA	exonic	Ptprk	synonymous SNV	"Ptprk:NM_001359356:exon26:c.T3672C:p.F1224F,Ptprk:NM_008983:exon27:c.T3708C:p.F1236F,Ptprk:NM_001359355:exon29:c.T3750C:p.F1250F"	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9817035	TTT	synonymous	T	5	TTTTT	NA
M6_p20	chr10	29224559	12A2p6	cell line	sgMsh2	29224559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	147	0	0	NA	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon5:c.A927G:p.Q309Q	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9993204	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr10	29227239	12A2p6	cell line	sgMsh2	29227239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	99	0	0	NA	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon6:c.A1815G:p.K605K	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.998136	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr10	31534870	12A2p6	cell line	sgMsh2	31534870	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	150	0	0	NA	exonic	Rnf217	synonymous SNV	Rnf217:NM_001146349:exon2:c.A828G:p.K276K	10qA4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	0.9999671	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr10	33930261	12A2p6	cell line	sgMsh2	33930261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	226	0	0	NA	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon7:c.T1042C:p.F348L,Zup1:NM_001359456:exon7:c.T1042C:p.F348L,Zup1:NM_028287:exon7:c.T1042C:p.F348L"	10qB1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999607	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	34411414	12A2p6	cell line	sgMsh2	34411414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	99	0	0	NA	exonic	Nt5dc1	nonsynonymous SNV	Nt5dc1:NM_176968:exon2:c.T139C:p.Y47H	10qB1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9419712	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	87	0	0	NA	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9272453	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr10	40003010	12A2p6	cell line	sgMsh2	40003010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	223	0	0	NA	exonic	Mfsd4b1	nonsynonymous SNV	Mfsd4b1:NM_144821:exon4:c.T890C:p.I297T	10qB1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9998766	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	40254307	12A2p6	cell line	sgMsh2	40254307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	125	0	0	NA	exonic	Gtf3c6	synonymous SNV	"Gtf3c6:NM_001359491:exon4:c.T231C:p.D77D,Gtf3c6:NM_001359492:exon4:c.T42C:p.D14D,Gtf3c6:NM_001359493:exon4:c.T42C:p.D14D,Gtf3c6:NM_026113:exon4:c.T228C:p.D76D"	10qB1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9124724	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	164	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999985	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	66	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.000777613	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	42274939	12A2p6	cell line	sgMsh2	42274939	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	81	0	0	NA	exonic	Foxo3	synonymous SNV	"Foxo3:NM_001376967:exon2:c.C495T:p.I165I,Foxo3:NM_019740:exon2:c.C495T:p.I165I"	10qB2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.8228996	TGA	synonymous	NA	NA	NA	NA
M6_p20	chr10	44441731	12A2p6	cell line	sgMsh2	44441731	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	33	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.C1095G:p.G365G	10qB2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.8595236	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr10	49132856	12A2p6	cell line	sgMsh2	49132856	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	169	0	0	NA	exonic	Grik2	synonymous SNV	"Grik2:NM_001111268:exon15:c.A2134C:p.R712R,Grik2:NM_001358866:exon15:c.A2134C:p.R712R,Grik2:NM_010349:exon15:c.A2134C:p.R712R"	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9755709	CTG	synonymous	CTG	8	CTGCTGCT	NA
M6_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	193	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	139	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.92426	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	53021917	12A2p6	cell line	sgMsh2	53021917	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	128	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon3:c.A423C:p.E141D	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9979392	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	53319635	12A2p6	cell line	sgMsh2	53319635	-	T	Insertion	Mutect2;Vardict	2	0.148	111	0	0	NA	exonic	Cep85l	frameshift insertion	Cep85l:NM_001204983:exon4:c.1104dupA:p.E369Rfs*11	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.695051748	NA	NA	TCT	frameshift	NA	NA	NA	1
M6_p20	chr10	53541605	12A2p6	cell line	sgMsh2	53541605	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	374	0	0	NA	exonic	Mcm9	nonsynonymous SNV	Mcm9:NM_027830:exon11:c.A1747G:p.M583V	10qB3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999995	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	57512133	12A2p6	cell line	sgMsh2	57512133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	171	0	0	NA	exonic	Hsf2	nonsynonymous SNV	Hsf2:NM_008297:exon12:c.C1489T:p.L497F	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9927301	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	57512156	12A2p6	cell line	sgMsh2	57512156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	149	0	0	NA	exonic	Hsf2	synonymous SNV	Hsf2:NM_008297:exon12:c.T1512C:p.A504A	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9999854	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr10	57523171	12A2p6	cell line	sgMsh2	57523171	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	144	0	0	NA	exonic	Serinc1	nonsynonymous SNV	Serinc1:NM_019760:exon6:c.C635T:p.A212V	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9639906	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	58476919	12A2p6	cell line	sgMsh2	58476919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	224	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.A3460G:p.S1154G	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9979725	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	58479591	12A2p6	cell line	sgMsh2	58479591	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	230	0	0	NA	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A6132G:p.S2044S	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.9999333	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr10	59049580	12A2p6	cell line	sgMsh2	59049580	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	19	0	0	NA	exonic	Sh3rf3	nonsynonymous SNV	Sh3rf3:NM_172788:exon4:c.G1284T:p.Q428H	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	1	0.8444029	AGG	nonsynonymous	CCCA	8	CCCACCCA	NA
M6_p20	chr10	59892714	12A2p6	cell line	sgMsh2	59892714	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	136	0	0	NA	exonic	Dnajb12	nonsynonymous SNV	"Dnajb12:NM_001374756:exon4:c.G503T:p.R168M,Dnajb12:NM_001376970:exon4:c.G503T:p.R168M,Dnajb12:NM_019965:exon4:c.G503T:p.R168M"	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.441451786	3	0.5667349	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	60773801	12A2p6	cell line	sgMsh2	60773801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	123	0	0	NA	exonic	Unc5b	nonsynonymous SNV	"Unc5b:NM_001359273:exon10:c.T1682G:p.I561S,Unc5b:NM_029770:exon11:c.T1715G:p.I572S"	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999597	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	61672432	12A2p6	cell line	sgMsh2	61672432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	244	0	0	NA	exonic	Ppa1	synonymous SNV	Ppa1:NM_026438:exon10:c.T837C:p.D279D	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.9097221	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr10	62563277	12A2p6	cell line	sgMsh2	62563277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	267	0	0	NA	exonic	Kifbp	nonsynonymous SNV	Kifbp:NM_028197:exon6:c.T937C:p.Y313H	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.992003	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	62664112	12A2p6	cell line	sgMsh2	62664112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	129	0	0	NA	exonic	Stox1	nonsynonymous SNV	Stox1:NM_001033260:exon3:c.A2668G:p.S890G	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9706547	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	63246002	12A2p6	cell line	sgMsh2	63246002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	137	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_001359484:exon3:c.A103G:p.K35E,Herc4:NM_026101:exon3:c.A103G:p.K35E,Herc4:NM_030114:exon3:c.A103G:p.K35E"	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	8.10E-08	AAA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr10	64088725	12A2p6	cell line	sgMsh2	64088725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	94	0	0	NA	exonic	Lrrtm3	nonsynonymous SNV	Lrrtm3:NM_178678:exon2:c.A662G:p.N221S	10qB4	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8891024	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	67021863	12A2p6	cell line	sgMsh2	67021863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	95	0	0	NA	exonic	Reep3	nonsynonymous SNV	"Reep3:NM_001204915:exon6:c.A448G:p.S150G,Reep3:NM_178606:exon6:c.A448G:p.S150G"	10qB5.1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.6381574	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	67219678	12A2p6	cell line	sgMsh2	67219678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	243	0	0	NA	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1194C:p.N398N,Jmjd1c:NM_207221:exon8:c.T1737C:p.N579N"	10qB5.1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9915196	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	184	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.300562918	3	0.9999684	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	69340868	12A2p6	cell line	sgMsh2	69340868	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	105	0	0	NA	exonic	Cdk1	nonsynonymous SNV	Cdk1:NM_007659:exon6:c.T500C:p.L167P	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.925170232	1	0.9979506	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	69808417	12A2p6	cell line	sgMsh2	69808417	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	192	0	0	NA	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon2:c.C65T:p.S22F,Ank3:NM_170688:exon2:c.C65T:p.S22F,Ank3:NM_170689:exon2:c.C65T:p.S22F,Ank3:NM_170690:exon2:c.C65T:p.S22F,Ank3:NM_170728:exon2:c.C65T:p.S22F,Ank3:NM_170729:exon2:c.C65T:p.S22F"	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9995992	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	74290972	12A2p6	cell line	sgMsh2	74290972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	479	0	0	NA	exonic	Pcdh15	synonymous SNV	"Pcdh15:NM_001142738:exon8:c.A771G:p.E257E,Pcdh15:NM_001142736:exon9:c.A882G:p.E294E,Pcdh15:NM_001142740:exon9:c.A882G:p.E294E,Pcdh15:NM_001142743:exon9:c.A882G:p.E294E,Pcdh15:NM_001142748:exon9:c.A882G:p.E294E,Pcdh15:NM_001142747:exon10:c.A897G:p.E299E"	10qB5.3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9999499	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	75263363	12A2p6	cell line	sgMsh2	75263363	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	160	0	0	NA	exonic	Specc1l	nonsynonymous SNV	"Specc1l:NM_153406:exon9:c.C2648A:p.P883H,Specc1l:NM_001145826:exon12:c.C2699A:p.P900H"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.999998	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	75585276	12A2p6	cell line	sgMsh2	75585276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	102	0	0	NA	exonic	Ggt1	nonsynonymous SNV	"Ggt1:NM_008116:exon10:c.A1324G:p.I442V,Ggt1:NM_001305992:exon11:c.A1324G:p.I442V,Ggt1:NM_001379540:exon11:c.A1324G:p.I442V,Ggt1:NM_001379541:exon11:c.A1324G:p.I442V,Ggt1:NM_001379537:exon12:c.A1324G:p.I442V,Ggt1:NM_001379538:exon12:c.A1324G:p.I442V,Ggt1:NM_001379539:exon12:c.A1324G:p.I442V"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9997796	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	75954626	12A2p6	cell line	sgMsh2	75954626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	80	0	0	NA	exonic	Gm5134	synonymous SNV	Gm5134:NM_198635:exon1:c.T55C:p.L19L	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9986935	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	76147554	12A2p6	cell line	sgMsh2	76147554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	105	0	0	NA	exonic	Slc5a4a	synonymous SNV	Slc5a4a:NM_133184:exon1:c.T24C:p.S8S	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9491715	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr10	76357079	12A2p6	cell line	sgMsh2	76357079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	0	0	NA	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon37:c.C8035T:p.H2679Y,Pcnt:NM_008787:exon37:c.C8089T:p.H2697Y"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9999786	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	76389176	12A2p6	cell line	sgMsh2	76389176	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	67	0	0	NA	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon25:c.T5493A:p.S1831R,Pcnt:NM_008787:exon25:c.T5493A:p.S1831R"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.8316186	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	156	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9920063	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	77077196	12A2p6	cell line	sgMsh2	77077196	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.25	53	0	0	NA	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon13:c.A2204G:p.E735G,Col18a1:NM_009929:exon14:c.A1568G:p.E523G"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9884997	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	77077198	12A2p6	cell line	sgMsh2	77077198	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.25	53	0	0	NA	exonic	Col18a1	synonymous SNV	"Col18a1:NM_001109991:exon13:c.A2202G:p.K734K,Col18a1:NM_009929:exon14:c.A1566G:p.K522K"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9884997	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	77096292	12A2p6	cell line	sgMsh2	77096292	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	81	0	0	NA	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T962C:p.V321A,Col18a1:NM_009929:exon3:c.T326C:p.V109A"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.0941558	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	77096319	12A2p6	cell line	sgMsh2	77096319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	91	0	0	NA	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T935C:p.L312P,Col18a1:NM_009929:exon3:c.T299C:p.L100P"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.525985106	2	0.9476555	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	77548693	12A2p6	cell line	sgMsh2	77548693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	50	0	0	NA	exonic	Itgb2	nonsynonymous SNV	Itgb2:NM_008404:exon6:c.A647G:p.Q216R	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.732622113	1	0.4994923	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	77606960	12A2p6	cell line	sgMsh2	77606960	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	80	0	0	NA	exonic	Sumo3	synonymous SNV	Sumo3:NM_001301671:exon1:c.T13C:p.L5L	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.00087132	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	324	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.211333302	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	78071997	12A2p6	cell line	sgMsh2	78071997	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	118	0	0	NA	exonic	Icosl	synonymous SNV	Icosl:NM_015790:exon3:c.T390A:p.P130P	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9715794	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	168	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.9998506	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	78752673	12A2p6	cell line	sgMsh2	78752673	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	19	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon1:c.A302T:p.K101M	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	2	1	1	0.8444029	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	78801882	12A2p6	cell line	sgMsh2	78801882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	118	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.C1241A:p.P414H	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999396	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79377807	12A2p6	cell line	sgMsh2	79377807	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	442	0	0	NA	exonic	Vmn2r82	stopgain	Vmn2r82:NM_001101572:exon2:c.C226T:p.R76X	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.009910521	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79378064	12A2p6	cell line	sgMsh2	79378064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	418	0	0	NA	exonic	Vmn2r82	nonsynonymous SNV	Vmn2r82:NM_001101572:exon2:c.A483G:p.I161M	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	5.50E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79541685	12A2p6	cell line	sgMsh2	79541685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	35	0	0	NA	exonic	Mier2	nonsynonymous SNV	"Mier2:NM_001316699:exon13:c.T1433C:p.L478P,Mier2:NM_027422:exon13:c.T1427C:p.L476P"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9524188	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79542433	12A2p6	cell line	sgMsh2	79542433	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	126	0	0	NA	exonic	Mier2	synonymous SNV	"Mier2:NM_001316699:exon12:c.G1155A:p.R385R,Mier2:NM_027422:exon12:c.G1149A:p.R383R"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9999207	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr10	79865362	12A2p6	cell line	sgMsh2	79865362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	84	0	0	NA	exonic	Plppr3	nonsynonymous SNV	Plppr3:NM_181681:exon7:c.A1645G:p.M549V	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.964939	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79887570	12A2p6	cell line	sgMsh2	79887570	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	27	0	0	NA	exonic	Elane	nonsynonymous SNV	Elane:NM_015779:exon4:c.A368G:p.N123S	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.8187479	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79900192	12A2p6	cell line	sgMsh2	79900192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	70	0	0	NA	exonic	Med16	nonsynonymous SNV	"Med16:NM_001163276:exon7:c.A1118G:p.D373G,Med16:NM_001359629:exon7:c.A1121G:p.D374G,Med16:NM_198107:exon7:c.A1121G:p.D374G"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.7454213	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	79997840	12A2p6	cell line	sgMsh2	79997840	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	38	0	0	NA	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon3:c.138delC:p.P48Lfs*29,Abca7:NM_013850:exon3:c.138delC:p.P48Lfs*29"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6_p20	chr10	80024846	12A2p6	cell line	sgMsh2	80024846	A	T	SNV	Mutect2;Vardict	2	0.135	28	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon10:c.A1018T:p.N340Y,Arhgap45:NM_001142701:exon11:c.A1366T:p.N456Y,Arhgap45:NM_001347074:exon11:c.A1399T:p.N467Y"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.6526878	AAA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr10	80028669	12A2p6	cell line	sgMsh2	80028669	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.2	21	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.C2173T:p.L725F,Arhgap45:NM_001142701:exon20:c.C2521T:p.L841F,Arhgap45:NM_001347074:exon20:c.C2554T:p.L852F"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.8101112	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80060204	12A2p6	cell line	sgMsh2	80060204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	96	0	0	NA	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon25:c.A2827T:p.S943C,Sbno2:NM_183426:exon25:c.A2827T:p.S943C"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9996418	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80293842	12A2p6	cell line	sgMsh2	80293842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	109	0	0	NA	exonic	Rps15	nonsynonymous SNV	"Rps15:NM_001310726:exon3:c.A209G:p.Y70C,Rps15:NM_009091:exon3:c.A290G:p.Y97C"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9711395	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	63	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9287282	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M6_p20	chr10	80314629	12A2p6	cell line	sgMsh2	80314629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	82	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.G5429A:p.R1810H,Apc2:NM_001372237:exon15:c.G5516A:p.R1839H,Apc2:NM_001372238:exon15:c.G5519A:p.R1840H,Apc2:NM_001372239:exon15:c.G5444A:p.R1815H,Apc2:NM_001372240:exon15:c.G5558A:p.R1853H,Apc2:NM_001372241:exon15:c.G5555A:p.R1852H"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9645875	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	49	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.09528491	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.199	32	0	0	NA	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.8902282	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr10	80520339	12A2p6	cell line	sgMsh2	80520339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	176	0	0	NA	exonic	Atp8b3	nonsynonymous SNV	Atp8b3:NM_026094:exon28:c.A3538G:p.I1180V	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9962276	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80544051	12A2p6	cell line	sgMsh2	80544051	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	86	0	0	NA	exonic	Rexo1	nonsynonymous SNV	Rexo1:NM_025852:exon10:c.C2944T:p.R982C	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9991957	CGC	nonsynonymous	CGCA	8	CGCACGCA	NA
M6_p20	chr10	80584311	12A2p6	cell line	sgMsh2	80584311	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	112	0	0	NA	exonic	Abhd17a	nonsynonymous SNV	Abhd17a:NM_145421:exon4:c.G539A:p.S180N	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.8428329	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80634539	12A2p6	cell line	sgMsh2	80634539	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	80	0	0	NA	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_001159591:exon2:c.G85T:p.G29C,Csnk1g2:NM_134002:exon2:c.G85T:p.G29C"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8576645	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80639826	12A2p6	cell line	sgMsh2	80639826	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	41	0	0	NA	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_134002:exon10:c.A1226C:p.N409T,Csnk1g2:NM_001159591:exon11:c.A1145C:p.N382T"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.970185	AAC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	190	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.5759361	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	80	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9500259	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80730907	12A2p6	cell line	sgMsh2	80730907	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	304	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon3:c.T240G:p.I80M	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9999859	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80789091	12A2p6	cell line	sgMsh2	80789091	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.188	21	0	0	NA	exonic	Dot1l	nonsynonymous SNV	Dot1l:NM_199322:exon24:c.T3392C:p.M1131T	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.7449141	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80893198	12A2p6	cell line	sgMsh2	80893198	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	95	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon12:c.A1964G:p.K655R	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.9908888	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	71	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.446148081	2	0.000889151	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81081397	12A2p6	cell line	sgMsh2	81081397	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.174	34	0	0	NA	exonic	Thop1	nonsynonymous SNV	Thop1:NM_022653:exon11:c.G1733A:p.R578Q	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.7217314	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81118183	12A2p6	cell line	sgMsh2	81118183	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	159	0	0	NA	exonic	Map2k2	nonsynonymous SNV	"Map2k2:NM_001347144:exon4:c.A482C:p.E161A,Map2k2:NM_023138:exon4:c.A482C:p.E161A"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9839696	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81144148	12A2p6	cell line	sgMsh2	81144148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	127	0	0	NA	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T175C:p.F59L	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.8994619	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81144365	12A2p6	cell line	sgMsh2	81144365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	58	0	0	NA	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T392A:p.I131N	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81244775	12A2p6	cell line	sgMsh2	81244775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	73	0	0	NA	exonic	Zfr2	nonsynonymous SNV	Zfr2:NM_001034895:exon8:c.T1282C:p.Y428H	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.8996234	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.128	46	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.8367485	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81387338	12A2p6	cell line	sgMsh2	81387338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	exonic	Dohh	synonymous SNV	Dohh:NM_133964:exon4:c.A450G:p.P150P	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9975066	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr10	81420728	12A2p6	cell line	sgMsh2	81420728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	105	0	0	NA	exonic	Nfic	nonsynonymous SNV	"Nfic:NM_008688:exon2:c.T101C:p.L34P,Nfic:NM_026756:exon2:c.T101C:p.L34P"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9346412	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	81509305	12A2p6	cell line	sgMsh2	81509305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	165	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T725C:p.L242P	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6460141	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	82985899	12A2p6	cell line	sgMsh2	82985899	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	56	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon1:c.A35G:p.N12S	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.6739469	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	86044493	12A2p6	cell line	sgMsh2	86044493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	251	0	0	NA	exonic	Fbxo7	synonymous SNV	"Fbxo7:NM_001310745:exon7:c.T804G:p.L268L,Fbxo7:NM_001347151:exon7:c.T798G:p.L266L,Fbxo7:NM_153195:exon7:c.T1041G:p.L347L"	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9999948	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	86934874	12A2p6	cell line	sgMsh2	86934874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	212	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon24:c.A2644G:p.T882A	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.7946532	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	86949922	12A2p6	cell line	sgMsh2	86949922	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	175	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon17:c.G1855A:p.A619T	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.6004117	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	88777517	12A2p6	cell line	sgMsh2	88777517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	149	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon31:c.C3901T:p.P1301S	10qC1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999951	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	89805342	12A2p6	cell line	sgMsh2	89805342	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	192	0	0	NA	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.2374delT:p.L793fs*0	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr10	91001014	12A2p6	cell line	sgMsh2	91001014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	76	0	0	NA	exonic	Apaf1	nonsynonymous SNV	"Apaf1:NM_001042558:exon23:c.T3200C:p.V1067A,Apaf1:NM_001282947:exon23:c.T3167C:p.V1056A,Apaf1:NM_009684:exon23:c.T3200C:p.V1067A"	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.7388507	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	91153120	12A2p6	cell line	sgMsh2	91153120	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	325	0	0	NA	exonic	Tmpo	nonsynonymous SNV	"Tmpo:NM_001080130:exon5:c.G721T:p.A241S,Tmpo:NM_001080129:exon6:c.G841T:p.A281S"	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999963	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	93500663	12A2p6	cell line	sgMsh2	93500663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	474	0	0	NA	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon14:c.T1253C:p.I418T	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	1.72E-09	ATC	nonsynonymous	CAT	8	CATCATCA	NA
M6_p20	chr10	93516261	12A2p6	cell line	sgMsh2	93516261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	191	0	0	NA	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon20:c.C1913T:p.A638V	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.9999916	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	93575309	12A2p6	cell line	sgMsh2	93575309	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	93	0	0	NA	exonic	Ccdc38	synonymous SNV	"Ccdc38:NM_001359749:exon10:c.T879C:p.H293H,Ccdc38:NM_175488:exon13:c.T1179C:p.H393H"	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6651264	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr10	93974002	12A2p6	cell line	sgMsh2	93974002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	66	0	0	NA	exonic	Vezt	nonsynonymous SNV	"Vezt:NM_001304572:exon11:c.A1664T:p.E555V,Vezt:NM_001304575:exon11:c.A1676T:p.E559V,Vezt:NM_001304720:exon11:c.A1664T:p.E555V,Vezt:NM_172538:exon11:c.A1664T:p.E555V"	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9959541	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	93996912	12A2p6	cell line	sgMsh2	93996912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	75	0	0	NA	exonic	Vezt	synonymous SNV	"Vezt:NM_001304572:exon5:c.A636G:p.R212R,Vezt:NM_001304575:exon5:c.A636G:p.R212R,Vezt:NM_001304720:exon5:c.A636G:p.R212R,Vezt:NM_172538:exon5:c.A636G:p.R212R"	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.8356237	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr10	94195270	12A2p6	cell line	sgMsh2	94195270	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.137	82	0	0	NA	exonic	Nr2c1	synonymous SNV	Nr2c1:NM_011629:exon14:c.A1692G:p.V564V	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9159305	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	96011018	12A2p6	cell line	sgMsh2	96011018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	26	0	0	NA	exonic	Eea1	nonsynonymous SNV	Eea1:NM_001001932:exon11:c.A1159G:p.T387A	10qC2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.09373808	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	100563393	12A2p6	cell line	sgMsh2	100563393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	141	0	0	NA	exonic	Cep290	nonsynonymous SNV	Cep290:NM_146009:exon49:c.T6776C:p.L2259P	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9425908	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	103393986	12A2p6	cell line	sgMsh2	103393986	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	252	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon4:c.C533A:p.P178H,Slc6a15:NM_001358821:exon4:c.C533A:p.P178H,Slc6a15:NM_175328:exon5:c.C533A:p.P178H"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9896367	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	103404331	12A2p6	cell line	sgMsh2	103404331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	173	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon7:c.A914G:p.Q305R,Slc6a15:NM_001358821:exon7:c.A914G:p.Q305R,Slc6a15:NM_175328:exon8:c.A914G:p.Q305R"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	0.9995947	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	105413620	12A2p6	cell line	sgMsh2	105413620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C251A:p.P84H	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9958467	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	105763431	12A2p6	cell line	sgMsh2	105763431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	159	0	0	NA	exonic	Mettl25	synonymous SNV	"Mettl25:NM_207522:exon12:c.T1732C:p.L578L,Mettl25:NM_001359640:exon13:c.T1297C:p.L433L,Mettl25:NM_001359642:exon13:c.T1297C:p.L433L"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.998033	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	106893435	12A2p6	cell line	sgMsh2	106893435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	166	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359683:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359684:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359685:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359690:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359691:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359692:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359694:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359695:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359697:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359698:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359677:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359678:exon21:c.T2442C:p.H814H,Ppfia2:NM_001359680:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359681:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359682:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359686:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359687:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359688:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359689:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359693:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359696:exon21:c.T2430C:p.H810H,Ppfia2:NM_001205341:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359672:exon22:c.T2655C:p.H885H,Ppfia2:NM_001359673:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359674:exon22:c.T2643C:p.H881H,Ppfia2:NM_001359675:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359676:exon22:c.T2643C:p.H881H,Ppfia2:NM_177373:exon22:c.T2643C:p.H881H"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9551797	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr10	107575960	12A2p6	cell line	sgMsh2	107575960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	514	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon32:c.T5544C:p.D1848D,Ptprq:NM_001370987:exon32:c.T5547C:p.D1849D"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	1	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr10	109693190	12A2p6	cell line	sgMsh2	109693190	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	65	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001368815:exon35:c.G6487T:p.G2163C,Nav3:NM_001081035:exon36:c.G6508T:p.G2170C"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.000966072	CCT	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr10	111492909	12A2p6	cell line	sgMsh2	111492909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	226	0	0	NA	exonic	Nap1l1	nonsynonymous SNV	"Nap1l1:NM_001358932:exon7:c.A509G:p.Y170C,Nap1l1:NM_015781:exon9:c.A698G:p.Y233C"	10qD1	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9991868	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	112211131	12A2p6	cell line	sgMsh2	112211131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	197	0	0	NA	exonic	Caps2	nonsynonymous SNV	"Caps2:NM_178278:exon16:c.T1541G:p.I514S,Caps2:NM_001310675:exon17:c.T1415G:p.I472S"	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9997418	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	112456180	12A2p6	cell line	sgMsh2	112456180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	99	0	0	NA	exonic	Kcnc2	synonymous SNV	"Kcnc2:NM_001025581:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359752:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359753:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379643:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379644:exon3:c.G1272A:p.Q424Q"	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	6.43E-06	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr10	112461980	12A2p6	cell line	sgMsh2	112461980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	103	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	Kcnc2:NM_001025581:exon5:c.C1808A:p.P603H	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	9.20E-08	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	115229164	12A2p6	cell line	sgMsh2	115229164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	226	0	0	NA	exonic	Tbc1d15	nonsynonymous SNV	Tbc1d15:NM_025706:exon5:c.T515C:p.L172P	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.999886	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.113	97	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9613875	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	115423268	12A2p6	cell line	sgMsh2	115423268	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	257	0	0	NA	exonic	Zfc3h1	nonsynonymous SNV	Zfc3h1:NM_001033261:exon25:c.C4817A:p.P1606Q	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.615214723	2	0.9999618	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	117362129	12A2p6	cell line	sgMsh2	117362129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	70	0	0	NA	exonic	Cpsf6	synonymous SNV	"Cpsf6:NM_001013391:exon5:c.A579C:p.S193S,Cpsf6:NM_001310609:exon5:c.A579C:p.S193S"	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.799784	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	111	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998936	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	120102859	12A2p6	cell line	sgMsh2	120102859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	162	0	0	NA	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon5:c.A1709G:p.D570G	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9985815	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	120925957	12A2p6	cell line	sgMsh2	120925957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	147	0	0	NA	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon11:c.C2492T:p.A831V	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999942	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	132	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9926793	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	182	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9988873	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr10	121553926	12A2p6	cell line	sgMsh2	121553926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	76	0	0	NA	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon14:c.A1620G:p.E540E	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.9710505	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	121561593	12A2p6	cell line	sgMsh2	121561593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	132	0	0	NA	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon9:c.A1173G:p.G391G	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.8652902	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr10	121561608	12A2p6	cell line	sgMsh2	121561608	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	138	0	0	NA	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon9:c.A1158G:p.Q386Q	10qD2	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.225422188	3	0.99999	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr10	125294803	12A2p6	cell line	sgMsh2	125294803	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	131	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon3:c.G12T:p.E4D,Slc16a7:NM_001358915:exon3:c.G12T:p.E4D,Slc16a7:NM_011391:exon4:c.G12T:p.E4D"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999789	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	58	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	CCG	synonymous	NA	NA	NA	NA
M6_p20	chr10	127169983	12A2p6	cell line	sgMsh2	127169983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	110	0	0	NA	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon6:c.T826C:p.Y276H,B4galnt1:NM_001358577:exon7:c.T718C:p.Y240H,B4galnt1:NM_027739:exon7:c.T925C:p.Y309H,B4galnt1:NM_008080:exon8:c.T817C:p.Y273H"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.821851729	1	0.9476492	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127308565	12A2p6	cell line	sgMsh2	127308565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	0	0	NA	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon6:c.T605C:p.L202P,Mars1:NM_001171582:exon6:c.T605C:p.L202P"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9302904	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127476547	12A2p6	cell line	sgMsh2	127476547	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.087	76	0	0	NA	exonic	R3hdm2	nonsynonymous SNV	"R3hdm2:NM_001168293:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359245:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359246:exon13:c.G1199A:p.C400Y,R3hdm2:NM_027900:exon13:c.G1157A:p.C386Y,R3hdm2:NM_001359243:exon14:c.G1253A:p.C418Y,R3hdm2:NM_001168292:exon15:c.G1253A:p.C418Y,R3hdm2:NM_001359244:exon15:c.G1157A:p.C386Y"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.6886681	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127518121	12A2p6	cell line	sgMsh2	127518121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	58	0	0	NA	exonic	Shmt2	nonsynonymous SNV	"Shmt2:NM_001252316:exon11:c.T1282G:p.L428V,Shmt2:NM_028230:exon11:c.T1291G:p.L431V"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127553800	12A2p6	cell line	sgMsh2	127553800	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	104	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon59:c.A9365T:p.K3122M	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.615214723	2	0.9812539	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127557203	12A2p6	cell line	sgMsh2	127557203	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	54	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon50:c.A8185T:p.T2729S	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9707393	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	170	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.8815284	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	104	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.5575031	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr10	127860229	12A2p6	cell line	sgMsh2	127860229	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	689	0	0	NA	exonic	Rdh19	synonymous SNV	Rdh19:NM_147222:exon4:c.A849G:p.S283S	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.187851824	3	1	CAG	synonymous	GCTG	9	GCTGGCTGG	NA
M6_p20	chr10	128048308	12A2p6	cell line	sgMsh2	128048308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	192	0	0	NA	exonic	Naca	nonsynonymous SNV	"Naca:NM_001282976:exon7:c.A574G:p.R192G,Naca:NM_013608:exon7:c.A574G:p.R192G,Naca:NM_001113199:exon8:c.A6490G:p.R2164G"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.9645053	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128110868	12A2p6	cell line	sgMsh2	128110868	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	220	0	0	NA	exonic	Baz2a	frameshift deletion	Baz2a:NM_054078:exon4:c.250delA:p.N84Tfs*92	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.972133188	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6_p20	chr10	128116127	12A2p6	cell line	sgMsh2	128116127	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	182	0	0	NA	exonic	Baz2a	synonymous SNV	Baz2a:NM_054078:exon9:c.C1713T:p.G571G	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9841297	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr10	128209424	12A2p6	cell line	sgMsh2	128209424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	57	0	0	NA	exonic	Gls2	nonsynonymous SNV	"Gls2:NM_001285777:exon17:c.A1222G:p.N408D,Gls2:NM_001033264:exon18:c.A1789G:p.N597D,Gls2:NM_001285779:exon18:c.A994G:p.N332D"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9916538	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128211121	12A2p6	cell line	sgMsh2	128211121	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	199	0	0	NA	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.A356C:p.D119A	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9958838	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128225892	12A2p6	cell line	sgMsh2	128225892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	107	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T11A:p.L4H	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998529	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128225954	12A2p6	cell line	sgMsh2	128225954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	100	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T73C:p.F25L	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	0.9997408	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128277187	12A2p6	cell line	sgMsh2	128277187	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	166	0	0	NA	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon4:c.G347T:p.R116M	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.8300842	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	128389817	12A2p6	cell line	sgMsh2	128389817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	178	0	0	NA	exonic	Ankrd52	synonymous SNV	Ankrd52:NM_172790:exon26:c.T2853C:p.L951L	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.8130534	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr10	128492272	12A2p6	cell line	sgMsh2	128492272	G	T	SNV	Mutect2;Vardict	2	0.049	340	0	0	NA	exonic	Myl6	synonymous SNV	"Myl6:NM_001317219:exon3:c.C201A:p.G67G,Myl6:NM_001317220:exon3:c.C201A:p.G67G,Myl6:NM_001317217:exon4:c.C306A:p.G102G,Myl6:NM_001317218:exon4:c.C306A:p.G102G,Myl6:NM_010860:exon4:c.C306A:p.G102G"	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.230118484	3	1.00E-09	TGC	synonymous	NA	NA	NA	NA
M6_p20	chr10	128571459	12A2p6	cell line	sgMsh2	128571459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	140	0	0	NA	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon24:c.A2918G:p.Y973C	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.8227651	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129160683	12A2p6	cell line	sgMsh2	129160683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	142	0	0	NA	exonic	Olfr771	frameshift deletion	Olfr771:NM_146547:exon1:c.300delT:p.F100Lfs*6	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr10	129462699	12A2p6	cell line	sgMsh2	129462699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	307	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.A22G:p.T8A	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	1	1	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129463208	12A2p6	cell line	sgMsh2	129463208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	366	0	0	NA	exonic	Olfr787	stopgain	Olfr787:NM_001011822:exon1:c.T531A:p.C177X	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.9863269	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129463212	12A2p6	cell line	sgMsh2	129463212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	366	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.T535C:p.Y179H	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.9767351	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	179	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.995104	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	99	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	0.9859144	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M6_p20	chr10	129648033	12A2p6	cell line	sgMsh2	129648033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	69	0	0	NA	exonic	Olfr799	nonsynonymous SNV	Olfr799:NM_146927:exon1:c.A904G:p.I302V	10qD3	chr10-3120209-129648033	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.9961332	AAT	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr10	129659829	12A2p6	cell line	sgMsh2	129659829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	342	0	0	NA	exonic	Olfr800	nonsynonymous SNV	Olfr800:NM_146548:exon1:c.A22G:p.T8A	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129660061	12A2p6	cell line	sgMsh2	129660061	G	A	SNV	Mutect2;MuSe;Vardict	3	0.072	468	0	0	NA	exonic	Olfr800	nonsynonymous SNV	Olfr800:NM_146548:exon1:c.G254A:p.G85D	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129791191	12A2p6	cell line	sgMsh2	129791191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	261	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A397G:p.I133V	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	129801679	12A2p6	cell line	sgMsh2	129801679	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	386	0	0	NA	exonic	Olfr811	frameshift deletion	Olfr811:NM_146552:exon1:c.845delT:p.L282Cfs*1	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr10	129842231	12A2p6	cell line	sgMsh2	129842231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	466	0	0	NA	exonic	Olfr812	synonymous SNV	Olfr812:NM_146795:exon1:c.A810G:p.K270K	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	TTTA	8	TTTATTTA	NA
M6_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Vardict	2	0.043	298	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	130112307	12A2p6	cell line	sgMsh2	130112307	A	G	SNV	Mutect2;MuSe	2	0.249	16	0	0	NA	exonic	Olfr823	nonsynonymous SNV	Olfr823:NM_146673:exon1:c.T482C:p.I161T	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	130163110	12A2p6	cell line	sgMsh2	130163110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	226	0	0	NA	exonic	Olfr825	nonsynonymous SNV	Olfr825:NM_146677:exon1:c.T215C:p.I72T	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Vardict	2	0.028	372	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr11	3333214	12A2p6	cell line	sgMsh2	3333214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	89	0	0	NA	exonic	Pik3ip1	nonsynonymous SNV	Pik3ip1:NM_178149:exon4:c.A313G:p.T105A	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.862338	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	3419953	12A2p6	cell line	sgMsh2	3419953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	84	0	0	NA	exonic	Rnf185	synonymous SNV	"Rnf185:NM_001290473:exon5:c.T249C:p.D83D,Rnf185:NM_001290472:exon6:c.T390C:p.D130D,Rnf185:NM_145355:exon7:c.T498C:p.D166D"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.826548024	1	0.9148656	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	164	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	0.9098346	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	3897432	12A2p6	cell line	sgMsh2	3897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	305	0	0	NA	exonic	Dusp18	nonsynonymous SNV	Dusp18:NM_173745:exon2:c.A421G:p.I141V	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9999994	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	51	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.8267728	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	5070073	12A2p6	cell line	sgMsh2	5070073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	65	0	0	NA	exonic	Ewsr1	synonymous SNV	"Ewsr1:NM_001283062:exon15:c.G1848T:p.R616R,Ewsr1:NM_001362617:exon15:c.G1608T:p.R536R,Ewsr1:NM_001362616:exon16:c.G1866T:p.R622R,Ewsr1:NM_001362620:exon16:c.G945T:p.R315R,Ewsr1:NM_001283061:exon17:c.G1962T:p.R654R,Ewsr1:NM_007968:exon17:c.G1959T:p.R653R,Ewsr1:NM_001362612:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362613:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362614:exon18:c.G1977T:p.R659R,Ewsr1:NM_001362615:exon18:c.G1974T:p.R658R"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	2	1	1	0.9956145	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr11	5088002	12A2p6	cell line	sgMsh2	5088002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	117	0	0	NA	exonic	Ewsr1	nonsynonymous SNV	"Ewsr1:NM_001283061:exon5:c.A371G:p.Y124C,Ewsr1:NM_001283062:exon5:c.A371G:p.Y124C,Ewsr1:NM_001283063:exon5:c.A371G:p.Y124C,Ewsr1:NM_001362617:exon5:c.A371G:p.Y124C,Ewsr1:NM_007968:exon5:c.A371G:p.Y124C,Ewsr1:NM_001362612:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362613:exon6:c.A392G:p.Y131C,Ewsr1:NM_001362614:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362615:exon6:c.A386G:p.Y129C,Ewsr1:NM_001362616:exon6:c.A389G:p.Y130C,Ewsr1:NM_001362618:exon6:c.A389G:p.Y130C"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999345	GTA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M6_p20	chr11	5103222	12A2p6	cell line	sgMsh2	5103222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	62	0	0	NA	exonic	Rhbdd3	synonymous SNV	"Rhbdd3:NM_001290493:exon4:c.T21A:p.P7P,Rhbdd3:NM_001290491:exon5:c.T21A:p.P7P,Rhbdd3:NM_001290492:exon5:c.T21A:p.P7P,Rhbdd3:NM_177370:exon5:c.T21A:p.P7P"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	0.980249	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	185	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9997062	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	5867952	12A2p6	cell line	sgMsh2	5867952	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	124	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon11:c.A1369G:p.S457G,Aebp1:NM_009636:exon11:c.A1366G:p.S456G"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.366311056	3	0.9757365	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	5870135	12A2p6	cell line	sgMsh2	5870135	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	106	0	0	NA	exonic	Aebp1	synonymous SNV	"Aebp1:NM_001291857:exon18:c.T2253C:p.G751G,Aebp1:NM_009636:exon18:c.T2250C:p.G750G"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	0.5152326	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	136	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	0.5667349	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	6589494	12A2p6	cell line	sgMsh2	6589494	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	78	0	0	NA	exonic	Ccm2	nonsynonymous SNV	"Ccm2:NM_001190343:exon4:c.G361A:p.A121T,Ccm2:NM_001190344:exon5:c.G343A:p.A115T,Ccm2:NM_146014:exon5:c.G535A:p.A179T"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.8545934	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	232	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.770192477	1	0.8958179	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	7198264	12A2p6	cell line	sgMsh2	7198264	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	58	0	0	NA	exonic	Igfbp1	synonymous SNV	Igfbp1:NM_008341:exon1:c.T306G:p.G102G	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.8219759	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr11	9298024	12A2p6	cell line	sgMsh2	9298024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	173	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon18:c.T7770C:p.L2590L	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.590713	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	9331622	12A2p6	cell line	sgMsh2	9331622	C	-	Deletion	Mutect2;Vardict	2	0.061	198	0	0	NA	exonic	Abca13	frameshift deletion	Abca13:NM_178259:exon25:c.9503delC:p.Q3169Sfs*44	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	197	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.8893509	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	9588391	12A2p6	cell line	sgMsh2	9588391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	268	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon55:c.T14173G:p.F4725V	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999793	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	88	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9295887	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr11	11801119	12A2p6	cell line	sgMsh2	11801119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	292	0	0	NA	exonic	Fignl1	synonymous SNV	"Fignl1:NM_001163360:exon2:c.T1935C:p.V645V,Fignl1:NM_001163359:exon3:c.T1935C:p.V645V,Fignl1:NM_021891:exon3:c.T1935C:p.V645V"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.6876609	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr11	11801717	12A2p6	cell line	sgMsh2	11801717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	121	0	0	NA	exonic	Fignl1	nonsynonymous SNV	"Fignl1:NM_001163360:exon2:c.T1337C:p.I446T,Fignl1:NM_001163359:exon3:c.T1337C:p.I446T,Fignl1:NM_021891:exon3:c.T1337C:p.I446T"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.6990632	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	12253400	12A2p6	cell line	sgMsh2	12253400	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	75	0	0	NA	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.C3226T:p.L1076F,Cobl:NM_001282994:exon12:c.C3280T:p.L1094F,Cobl:NM_172496:exon12:c.C3301T:p.L1101F"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.99091837	1	0.997576	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	12253475	12A2p6	cell line	sgMsh2	12253475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	116	0	0	NA	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.A3151G:p.T1051A,Cobl:NM_001282994:exon12:c.A3205G:p.T1069A,Cobl:NM_172496:exon12:c.A3226G:p.T1076A"	11qA1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9262428	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	16263013	12A2p6	cell line	sgMsh2	16263013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	133	0	0	NA	exonic	Vstm2a	nonsynonymous SNV	"Vstm2a:NM_001290539:exon4:c.A397G:p.N133D,Vstm2a:NM_001363461:exon4:c.A397G:p.N133D,Vstm2a:NM_145967:exon4:c.A397G:p.N133D"	11qA2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9820922	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	16263042	12A2p6	cell line	sgMsh2	16263042	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	133	0	0	NA	exonic	Vstm2a	synonymous SNV	"Vstm2a:NM_001290539:exon4:c.C426A:p.A142A,Vstm2a:NM_001363461:exon4:c.C426A:p.A142A,Vstm2a:NM_145967:exon4:c.C426A:p.A142A"	11qA2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	8.47E-07	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr11	17078555	12A2p6	cell line	sgMsh2	17078555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	163	0	0	NA	exonic	Cnrip1	synonymous SNV	Cnrip1:NM_029861:exon3:c.C486T:p.S162S	11qA2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999984	CCT	synonymous	TCCT	8	TCCTTCCT	NA
M6_p20	chr11	20008413	12A2p6	cell line	sgMsh2	20008413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	322	0	0	NA	exonic	Spred2	nonsynonymous SNV	Spred2:NM_033523:exon4:c.G374A:p.G125D	11qA3.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.9855238	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	201	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5255912	GCA	synonymous	NA	NA	NA	NA
M6_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	165	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9922031	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	23473232	12A2p6	cell line	sgMsh2	23473232	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	135	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon74:c.A9433G:p.I3145V	11qA3.2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.605822132	2	0.9962516	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	23517230	12A2p6	cell line	sgMsh2	23517230	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	296	0	0	NA	exonic	1700093K21Rik	synonymous SNV	"1700093K21Rik:NM_001110133:exon4:c.T348G:p.A116A,1700093K21Rik:NM_026105:exon4:c.T348G:p.A116A,1700093K21Rik:NM_001370913:exon5:c.T348G:p.A116A"	11qA3.2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.850029502	1	0.9999606	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	245	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.324044396	3	0.9999929	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M6_p20	chr11	23870296	12A2p6	cell line	sgMsh2	23870296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	183	0	0	NA	exonic	Papolg	synonymous SNV	Papolg:NM_172555:exon15:c.T1293C:p.N431N	11qA3.2	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.7260335	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	146	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9983276	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	29571679	12A2p6	cell line	sgMsh2	29571679	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	272	0	0	NA	exonic	Clhc1	nonsynonymous SNV	"Clhc1:NM_001163521:exon10:c.T1211G:p.I404S,Clhc1:NM_028504:exon10:c.T1244G:p.I415S"	11qA3.3	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999823	ATT	nonsynonymous	ATATT	10	ATATTATATT	NA
M6_p20	chr11	30143115	12A2p6	cell line	sgMsh2	30143115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	118	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon10:c.A1206G:p.I402M,Sptbn1:NM_175836:exon10:c.A1245G:p.I415M"	11qA3.3	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9976743	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	30149994	12A2p6	cell line	sgMsh2	30149994	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	301	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon5:c.A544T:p.I182F,Sptbn1:NM_175836:exon5:c.A583T:p.I195F"	11qA3.3	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.9971534	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	30952611	12A2p6	cell line	sgMsh2	30952611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	284	0	0	NA	exonic	Erlec1	synonymous SNV	Erlec1:NM_025745:exon2:c.A228G:p.K76K	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	1	1	1.09E-09	ATT	synonymous	T	5	TTTTT	NA
M6_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	365	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999902	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	31369736	12A2p6	cell line	sgMsh2	31369736	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.134	60	0	0	NA	exonic	Stc2	nonsynonymous SNV	Stc2:NM_011491:exon1:c.G127A:p.G43S	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.009655848	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	31671559	12A2p6	cell line	sgMsh2	31671559	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	23	0	0	NA	exonic	Bod1	nonsynonymous SNV	Bod1:NM_001024919:exon1:c.A143C:p.K48T	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.8288936	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	128	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	0.9997073	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	168	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.460236968	2	0.6678554	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	32598830	12A2p6	cell line	sgMsh2	32598830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	67	0	0	NA	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon9:c.A803G:p.N268S,Stk10:NM_001359178:exon9:c.A710G:p.N237S,Stk10:NM_009288:exon9:c.A1397G:p.N466S"	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	1	1	0.9962675	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	180	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.09178621	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34071108	12A2p6	cell line	sgMsh2	34071108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	176	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon7:c.G463A:p.A155T	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9999927	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	222	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.9996405	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	115	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	9.91E-06	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34402347	12A2p6	cell line	sgMsh2	34402347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.A388G:p.S130G	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9880671	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34514488	12A2p6	cell line	sgMsh2	34514488	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	171	0	0	NA	exonic	Dock2	synonymous SNV	Dock2:NM_033374:exon23:c.G2316A:p.R772R	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9747223	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr11	34514531	12A2p6	cell line	sgMsh2	34514531	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	104	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon23:c.A2273G:p.Y758C	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	0.9803446	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	377	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	34822188	12A2p6	cell line	sgMsh2	34822188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	350	0	0	NA	exonic	Spdl1	nonsynonymous SNV	Spdl1:NM_027411:exon7:c.A884C:p.K295T	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.8822422	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	35234893	12A2p6	cell line	sgMsh2	35234893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	332	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon4:c.C398T:p.P133L	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9999776	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	35588985	12A2p6	cell line	sgMsh2	35588985	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	86	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon10:c.T988C:p.Y330H	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9227105	GTA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr11	35808486	12A2p6	cell line	sgMsh2	35808486	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	214	0	0	NA	exonic	Rars	nonsynonymous SNV	Rars:NM_025936:exon15:c.T1979A:p.M660K	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.554293	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	39	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.8466151	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	245	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.9991661	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M6_p20	chr11	36047089	12A2p6	cell line	sgMsh2	36047089	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	257	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon22:c.T4663C:p.F1555L,Tenm2:NM_011856:exon23:c.T4756C:p.F1586L"	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.258296258	3	7.63E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	262	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	2	1	1	1.52E-09	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	40710205	12A2p6	cell line	sgMsh2	40710205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	613	0	0	NA	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1337G:p.N446S	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.878207276	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	40728505	12A2p6	cell line	sgMsh2	40728505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	78	0	0	NA	exonic	Hmmr	synonymous SNV	Hmmr:NM_013552:exon3:c.G147A:p.E49E	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	1	1	0.9984643	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr11	41971878	12A2p6	cell line	sgMsh2	41971878	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	101	0	0	NA	exonic	Gabrg2	nonsynonymous SNV	"Gabrg2:NM_008073:exon4:c.A378T:p.K126N,Gabrg2:NM_177408:exon4:c.A378T:p.K126N,Gabrg2:NM_001362655:exon5:c.A324T:p.K108N,Gabrg2:NM_001362656:exon5:c.A321T:p.K107N"	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9809904	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	42162557	12A2p6	cell line	sgMsh2	42162557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	513	0	0	NA	exonic	Gabra1	synonymous SNV	"Gabra1:NM_001359035:exon4:c.T249C:p.D83D,Gabra1:NM_010250:exon4:c.T249C:p.D83D"	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5016429	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	373	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.239511075	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	42529453	12A2p6	cell line	sgMsh2	42529453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	379	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362647:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362649:exon5:c.A404G:p.Y135C,Gabrb2:NM_001362646:exon6:c.A500G:p.Y167C,Gabrb2:NM_008070:exon6:c.A500G:p.Y167C"	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	9.83E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	43203069	12A2p6	cell line	sgMsh2	43203069	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	111	0	0	NA	exonic	Atp10b	nonsynonymous SNV	Atp10b:NM_176999:exon10:c.A1439G:p.Y480C	11qA5	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9994567	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	307	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	4.88E-09	AAC	synonymous	AACA	8	AACAAACA	NA
M6_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	84	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9733245	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	44561649	12A2p6	cell line	sgMsh2	44561649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	221	0	0	NA	exonic	Rnf145	nonsynonymous SNV	"Rnf145:NM_001363166:exon10:c.T1454C:p.M485T,Rnf145:NM_028862:exon10:c.T1454C:p.M485T"	11qB1.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.09362895	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	44869152	12A2p6	cell line	sgMsh2	44869152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	139	0	0	NA	exonic	Ebf1	synonymous SNV	"Ebf1:NM_001290709:exon7:c.A615G:p.P205P,Ebf1:NM_001290710:exon7:c.A615G:p.P205P,Ebf1:NM_001290711:exon7:c.A216G:p.P72P,Ebf1:NM_001362569:exon7:c.A519G:p.P173P,Ebf1:NM_001362571:exon7:c.A615G:p.P205P,Ebf1:NM_001362574:exon7:c.A615G:p.P205P,Ebf1:NM_001362576:exon7:c.A216G:p.P72P,Ebf1:NM_001362578:exon7:c.A216G:p.P72P,Ebf1:NM_007897:exon7:c.A615G:p.P205P,Ebf1:NM_001362575:exon8:c.A564G:p.P188P,Ebf1:NM_001362577:exon8:c.A216G:p.P72P,Ebf1:NM_001362579:exon8:c.A216G:p.P72P"	11qB1.1	chr11-3133133-45005041	5	3	2	0.93	4.367554902	NA	1	0.507199924	2	0.9589593	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	46389319	12A2p6	cell line	sgMsh2	46389319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	91	0	0	NA	exonic	Itk	nonsynonymous SNV	"Itk:NM_001281965:exon1:c.T92C:p.F31S,Itk:NM_001281966:exon1:c.T92C:p.F31S,Itk:NM_001281967:exon1:c.T92C:p.F31S,Itk:NM_001281968:exon1:c.T92C:p.F31S,Itk:NM_010583:exon1:c.T92C:p.F31S"	11qB1.1	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9994632	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	46679649	12A2p6	cell line	sgMsh2	46679649	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	179	0	0	NA	exonic	Timd2	nonsynonymous SNV	"Timd2:NM_001161355:exon5:c.G598T:p.D200Y,Timd2:NM_001161356:exon5:c.G598T:p.D200Y,Timd2:NM_134249:exon5:c.G598T:p.D200Y"	11qB1.1	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	0.9997152	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	48889131	12A2p6	cell line	sgMsh2	48889131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	815	0	0	NA	exonic	Gm5431	synonymous SNV	Gm5431:NM_001024230:exon5:c.A963G:p.Q321Q	11qB1.2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	1	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	48987591	12A2p6	cell line	sgMsh2	48987591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	325	0	0	NA	exonic	Tgtp1	nonsynonymous SNV	Tgtp1:NM_011579:exon2:c.A286T:p.M96L	11qB1.2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9952814	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;MuSe;Vardict	3	0.08	332	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.375703647	3	0.999947	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	81	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.7778214	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	49960554	12A2p6	cell line	sgMsh2	49960554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	16	0	0	NA	exonic	Rasgef1c	nonsynonymous SNV	"Rasgef1c:NM_001347462:exon5:c.A604T:p.S202C,Rasgef1c:NM_029004:exon5:c.A595T:p.S199C"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.8084062	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	50379470	12A2p6	cell line	sgMsh2	50379470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	68	0	0	NA	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362529:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362530:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362533:exon2:c.T100C:p.C34R,Hnrnph1:NM_001347487:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362522:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362524:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362525:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362527:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362528:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362532:exon3:c.T100C:p.C34R,Hnrnph1:NM_021510:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362523:exon4:c.T100C:p.C34R"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9724175	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	50776632	12A2p6	cell line	sgMsh2	50776632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	88	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon9:c.T1396G:p.C466G	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.950272	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M6_p20	chr11	50785555	12A2p6	cell line	sgMsh2	50785555	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	217	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon14:c.G2096A:p.G699E	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9996617	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	219	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9939586	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	50	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9853852	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr11	51048724	12A2p6	cell line	sgMsh2	51048724	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	256	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.T616G:p.L206V	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9945946	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	51586645	12A2p6	cell line	sgMsh2	51586645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	133	0	0	NA	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon3:c.A263G:p.N88S,Phykpl:NM_028398:exon3:c.A263G:p.N88S"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9737298	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	86	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9466742	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	51831404	12A2p6	cell line	sgMsh2	51831404	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.147	34	0	0	NA	exonic	Jade2	synonymous SNV	"Jade2:NM_199299:exon5:c.A321T:p.P107P,Jade2:NM_001357588:exon6:c.A537T:p.P179P"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.5891233	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	53375629	12A2p6	cell line	sgMsh2	53375629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	54	0	0	NA	exonic	Aff4	nonsynonymous SNV	"Aff4:NM_001363331:exon4:c.T944G:p.L315R,Aff4:NM_033565:exon4:c.T944G:p.L315R"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9893843	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Vardict	2	0.079	173	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.371007352	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr11	53536663	12A2p6	cell line	sgMsh2	53536663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	234	0	0	NA	exonic	Septin8	synonymous SNV	"Septin8:NM_001252332:exon6:c.T708C:p.P236P,Septin8:NM_001252333:exon6:c.T702C:p.P234P,Septin8:NM_001347496:exon6:c.T708C:p.P236P,Septin8:NM_001361968:exon6:c.T702C:p.P234P,Septin8:NM_001361969:exon6:c.T522C:p.P174P,Septin8:NM_033144:exon6:c.T708C:p.P236P"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999982	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	53684264	12A2p6	cell line	sgMsh2	53684264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	44	0	0	NA	exonic	Rad50	nonsynonymous SNV	Rad50:NM_009012:exon12:c.A1831G:p.I611V	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9764624	ATA	nonsynonymous	TTAT	8	TTATTTAT	NA
M6_p20	chr11	54325615	12A2p6	cell line	sgMsh2	54325615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	287	0	0	NA	exonic	Acsl6	nonsynonymous SNV	"Acsl6:NM_001033597:exon6:c.T607C:p.Y203H,Acsl6:NM_001033598:exon6:c.T532C:p.Y178H,Acsl6:NM_001033599:exon6:c.T532C:p.Y178H,Acsl6:NM_144823:exon6:c.T607C:p.Y203H"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9962933	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	54482531	12A2p6	cell line	sgMsh2	54482531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	171	0	0	NA	exonic	Fnip1	synonymous SNV	Fnip1:NM_173753:exon6:c.T567C:p.S189S	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.997412	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr11	54493324	12A2p6	cell line	sgMsh2	54493324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	124	0	0	NA	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon10:c.A1046G:p.N349S	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	6.20E-07	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	54568451	12A2p6	cell line	sgMsh2	54568451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	168	0	0	NA	exonic	Rapgef6	synonymous SNV	"Rapgef6:NM_001252494:exon6:c.A450G:p.E150E,Rapgef6:NM_001252496:exon6:c.A450G:p.E150E,Rapgef6:NM_175258:exon6:c.A450G:p.E150E"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.8357068	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	54690210	12A2p6	cell line	sgMsh2	54690210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	155	0	0	NA	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon25:c.A3779C:p.N1260T,Rapgef6:NM_001252494:exon26:c.A3794C:p.N1265T,Rapgef6:NM_001252496:exon27:c.A3818C:p.N1273T"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9997681	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	306	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	1.01E-09	AAC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr11	55497734	12A2p6	cell line	sgMsh2	55497734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	80	0	0	NA	exonic	G3bp1	synonymous SNV	G3bp1:NM_013716:exon9:c.T921C:p.N307N	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.8015178	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr11	57201163	12A2p6	cell line	sgMsh2	57201163	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	198	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon5:c.A683T:p.Y228F,Gria1:NM_001252403:exon5:c.A476T:p.Y159F,Gria1:NM_008165:exon5:c.A683T:p.Y228F"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.8653371	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	114	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.9914509	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	141	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.999121	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M6_p20	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	57	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.502503628	2	0.8196942	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	58625368	12A2p6	cell line	sgMsh2	58625368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	265	0	0	NA	exonic	Olfr323	nonsynonymous SNV	Olfr323:NM_146376:exon1:c.T677C:p.L226P	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.7787738	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Vardict	2	0.042	714	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.197244415	3	1	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr11	58733096	12A2p6	cell line	sgMsh2	58733096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	247	0	0	NA	exonic	Olfr317	nonsynonymous SNV	Olfr317:NM_001011769:exon1:c.T68C:p.L23P	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.972472	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	58733122	12A2p6	cell line	sgMsh2	58733122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	250	0	0	NA	exonic	Olfr317	synonymous SNV	Olfr317:NM_001011769:exon1:c.T42C:p.L14L	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9777893	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr11	59000260	12A2p6	cell line	sgMsh2	59000260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	43	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon93:c.T21445C:p.S7149P	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.8056101	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59007828	12A2p6	cell line	sgMsh2	59007828	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.171	278	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon84:c.T19704C:p.I6568I	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9956083	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr11	59028617	12A2p6	cell line	sgMsh2	59028617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	246	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon76:c.T18601C:p.W6201R,Obscn:NM_199152:exon83:c.T20560C:p.W6854R"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	3.53E-08	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.121	161	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.9991205	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59463124	12A2p6	cell line	sgMsh2	59463124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	154	0	0	NA	exonic	Zfp867	nonsynonymous SNV	Zfp867:NM_178417:exon4:c.T1378C:p.Y460H	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.99998	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59589837	12A2p6	cell line	sgMsh2	59589837	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	131	0	0	NA	exonic	Olfr223	nonsynonymous SNV	Olfr223:NM_146429:exon1:c.A251C:p.Q84P	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9104392	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59761185	12A2p6	cell line	sgMsh2	59761185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	93	0	0	NA	exonic	Mprip	nonsynonymous SNV	Mprip:NM_001368931:exon16:c.A6176C:p.E2059A	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9919342	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	59792727	12A2p6	cell line	sgMsh2	59792727	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	110	0	0	NA	exonic	Flcn	synonymous SNV	"Flcn:NM_001271356:exon13:c.A1623G:p.A541A,Flcn:NM_001271357:exon13:c.A1623G:p.A541A,Flcn:NM_146018:exon13:c.A1623G:p.A541A"	11qB1.3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9929806	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr11	60201272	12A2p6	cell line	sgMsh2	60201272	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Srebf1	nonsynonymous SNV	"Srebf1:NM_001313979:exon16:c.A2821G:p.T941A,Srebf1:NM_001358314:exon16:c.A2764G:p.T922A,Srebf1:NM_001358315:exon16:c.A2743G:p.T915A,Srebf1:NM_011480:exon16:c.A2836G:p.T946A"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9902016	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	60387305	12A2p6	cell line	sgMsh2	60387305	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	299	0	0	NA	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon11:c.A1144C:p.I382L	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9992634	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	60393818	12A2p6	cell line	sgMsh2	60393818	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	221	0	0	NA	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon13:c.T1448C:p.L483P	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.9845208	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	60487239	12A2p6	cell line	sgMsh2	60487239	A	G	SNV	Mutect2;Vardict	2	0.103	42	0	0	NA	exonic	Myo15	nonsynonymous SNV	"Myo15:NM_182698:exon7:c.A518G:p.E173G,Myo15:NM_001103171:exon8:c.A4079G:p.E1360G,Myo15:NM_010862:exon8:c.A4079G:p.E1360G"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.7204377	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	60779813	12A2p6	cell line	sgMsh2	60779813	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	117	0	0	NA	exonic	Smcr8	nonsynonymous SNV	"Smcr8:NM_001085440:exon1:c.C1786A:p.L596I,Smcr8:NM_175491:exon1:c.C1786A:p.L596I"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	0.9939584	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	61491124	12A2p6	cell line	sgMsh2	61491124	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	86	0	0	NA	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon3:c.C961A:p.L321I,Mapk7:NM_001291035:exon3:c.C544A:p.L182I,Mapk7:NM_001291037:exon3:c.C751A:p.L251I,Mapk7:NM_001291033:exon4:c.C754A:p.L252I,Mapk7:NM_001291036:exon4:c.C544A:p.L182I,Mapk7:NM_001361989:exon4:c.C544A:p.L182I,Mapk7:NM_011841:exon4:c.C961A:p.L321I"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9322669	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	119	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999443	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	61671685	12A2p6	cell line	sgMsh2	61671685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	41	0	0	NA	exonic	Grap	nonsynonymous SNV	Grap:NM_027817:exon5:c.T481A:p.C161S	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.970185	TTG	nonsynonymous	GCTT	8	GCTTGCTT	NA
M6_p20	chr11	62029334	12A2p6	cell line	sgMsh2	62029334	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	91	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001281818:exon2:c.A59C:p.D20A,Specc1:NM_001310526:exon2:c.A59C:p.D20A"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.7937197	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	62211664	12A2p6	cell line	sgMsh2	62211664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	169	0	0	NA	exonic	Specc1	synonymous SNV	"Specc1:NM_001029936:exon12:c.A2808G:p.A936A,Specc1:NM_001281818:exon14:c.A3048G:p.A1016A"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5280426	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Vardict	2	0.096	420	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.450844377	3	0.678693	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	65000325	12A2p6	cell line	sgMsh2	65000325	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	140	0	0	NA	exonic	Elac2	nonsynonymous SNV	"Elac2:NM_001362982:exon23:c.T2141C:p.M714T,Elac2:NM_001362983:exon23:c.T2126C:p.M709T,Elac2:NM_001362984:exon23:c.T1022C:p.M341T,Elac2:NM_023479:exon23:c.T2126C:p.M709T"	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9632894	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	65855384	12A2p6	cell line	sgMsh2	65855384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon63:c.A11902G:p.T3968A	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9724397	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	118	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9675247	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	66502749	12A2p6	cell line	sgMsh2	66502749	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	151	0	0	NA	exonic	Shisa6	synonymous SNV	Shisa6:NM_001034874:exon2:c.C720A:p.T240T	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.953512	TGG	synonymous	NA	NA	NA	NA
M6_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	353	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.262992553	3	1.01E-09	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	67245792	12A2p6	cell line	sgMsh2	67245792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	198	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.T1395C:p.I465I	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	67248692	12A2p6	cell line	sgMsh2	67248692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	85	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon16:c.T1834C:p.Y612H	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9685781	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	67258686	12A2p6	cell line	sgMsh2	67258686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	110	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon36:c.T5243C:p.I1748T	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9826181	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	179	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.9908183	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	67681255	12A2p6	cell line	sgMsh2	67681255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	296	0	0	NA	exonic	Gas7	nonsynonymous SNV	"Gas7:NM_001277080:exon11:c.A800G:p.Y267C,Gas7:NM_001109657:exon12:c.A989G:p.Y330C,Gas7:NM_001277079:exon12:c.A977G:p.Y326C,Gas7:NM_008088:exon12:c.A1004G:p.Y335C"	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9968718	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	67695718	12A2p6	cell line	sgMsh2	67695718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	176	0	0	NA	exonic	Rcvrn	nonsynonymous SNV	Rcvrn:NM_009038:exon1:c.A302G:p.K101R	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	36	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	2	1	1	0.9559584	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	312	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.300562918	3	1.56E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69127508	12A2p6	cell line	sgMsh2	69127508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	116	0	0	NA	exonic	Aloxe3	synonymous SNV	Aloxe3:NM_011786:exon2:c.T330C:p.T110T	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.8177269	CTG	synonymous	TACTG	11	TACTGTACTGT	NA
M6_p20	chr11	69233024	12A2p6	cell line	sgMsh2	69233024	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	21	0	0	NA	exonic	Gucy2e	nonsynonymous SNV	Gucy2e:NM_008192:exon4:c.T1048G:p.F350V	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.000955716	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.503	28	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr11	69357706	12A2p6	cell line	sgMsh2	69357706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	154	0	0	NA	exonic	Chd3	nonsynonymous SNV	Chd3:NM_146019:exon14:c.A2498G:p.E833G	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999967	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69402221	12A2p6	cell line	sgMsh2	69402221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	122	0	0	NA	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon15:c.T3728C:p.V1243A	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9933587	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69477754	12A2p6	cell line	sgMsh2	69477754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	189	0	0	NA	exonic	Dnah2	nonsynonymous SNV	Dnah2:NM_001081330:exon32:c.T5054C:p.V1685A	11qB3	chr11-45881890-69579350	4	2	2	0.93	4.367554902	NA	1	0.502503628	2	0.9761063	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69642133	12A2p6	cell line	sgMsh2	69642133	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.124	61	0	0	NA	exonic	Fxr2	nonsynonymous SNV	Fxr2:NM_011814:exon6:c.T536A:p.F179Y	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.582340654	2	0.9221363	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69668102	12A2p6	cell line	sgMsh2	69668102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	267	0	0	NA	exonic	Eif4a1	nonsynonymous SNV	"Eif4a1:NM_001159375:exon9:c.A916G:p.M306V,Eif4a1:NM_144958:exon9:c.A916G:p.M306V"	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.774888773	1	0.9451266	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69760935	12A2p6	cell line	sgMsh2	69760935	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	122	0	0	NA	exonic	Slc35g3	nonsynonymous SNV	Slc35g3:NM_019871:exon2:c.C289T:p.L97F	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9999563	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69882634	12A2p6	cell line	sgMsh2	69882634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	106	0	0	NA	exonic	Acap1	nonsynonymous SNV	Acap1:NM_153788:exon19:c.A1912G:p.S638G	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.638696201	2	0.9646379	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	69913202	12A2p6	cell line	sgMsh2	69913202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	56	0	0	NA	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon28:c.T4491C:p.Y1497Y,Neurl4:NM_001013414:exon29:c.T4563C:p.Y1521Y,Neurl4:NM_001291118:exon29:c.T4557C:p.Y1519Y"	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9909565	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr11	70460791	12A2p6	cell line	sgMsh2	70460791	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	13	0	0	NA	exonic	Zmynd15	synonymous SNV	Zmynd15:NM_001029929:exon2:c.T222A:p.G74G	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.008222426	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	70664812	12A2p6	cell line	sgMsh2	70664812	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	129	0	0	NA	exonic	Spag7	nonsynonymous SNV	"Spag7:NM_001167669:exon4:c.G268A:p.D90N,Spag7:NM_172561:exon4:c.G298A:p.D100N"	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.408577717	3	0.8602138	TCA	nonsynonymous	TCA	8	TCATCATC	NA
M6_p20	chr11	70674659	12A2p6	cell line	sgMsh2	70674659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	45	0	0	NA	exonic	Camta2	nonsynonymous SNV	"Camta2:NM_001190379:exon14:c.T2390C:p.V797A,Camta2:NM_001364103:exon14:c.T2582C:p.V861A,Camta2:NM_001190376:exon15:c.T2462C:p.V821A,Camta2:NM_001190378:exon15:c.T2462C:p.V821A,Camta2:NM_178116:exon15:c.T2477C:p.V826A"	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.901688754	1	0.9178036	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	70726356	12A2p6	cell line	sgMsh2	70726356	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.164	35	0	0	NA	exonic	Kif1c	nonsynonymous SNV	Kif1c:NM_153103:exon22:c.G2479A:p.A827T	11qB3	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.770192477	1	0.6119556	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	70934579	12A2p6	cell line	sgMsh2	70934579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	76	0	0	NA	exonic	Rabep1	nonsynonymous SNV	"Rabep1:NM_001291141:exon13:c.T2071C:p.C691R,Rabep1:NM_001291142:exon13:c.T2080C:p.C694R,Rabep1:NM_019400:exon14:c.T2200C:p.C734R,Rabep1:NM_001291143:exon15:c.T1948C:p.C650R"	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.699748043	2	0.7046311	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	71759877	12A2p6	cell line	sgMsh2	71759877	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.16	37	0	0	NA	exonic	Wscd1	nonsynonymous SNV	"Wscd1:NM_001357960:exon2:c.A29C:p.K10T,Wscd1:NM_001357965:exon2:c.A29C:p.K10T,Wscd1:NM_177618:exon2:c.A29C:p.K10T"	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.751407295	1	0.5630503	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.185	137	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.868814685	1	0.9962888	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	72176682	12A2p6	cell line	sgMsh2	72176682	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.219	135	0	0	NA	exonic	4933427D14Rik	nonsynonymous SNV	"4933427D14Rik:NM_001361564:exon10:c.A1781G:p.D594G,4933427D14Rik:NM_028963:exon10:c.A1781G:p.D594G"	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9999847	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	72304809	12A2p6	cell line	sgMsh2	72304809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	63	0	0	NA	exonic	Xaf1	synonymous SNV	Xaf1:NM_001037713:exon3:c.A312G:p.V104V	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.624607314	2	0.009118229	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	72317574	12A2p6	cell line	sgMsh2	72317574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	168	0	0	NA	exonic	Fbxo39	nonsynonymous SNV	Fbxo39:NM_001099688:exon2:c.A751G:p.T251A	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.502503628	2	0.9668296	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	72980714	12A2p6	cell line	sgMsh2	72980714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	129	0	0	NA	exonic	Atp2a3	synonymous SNV	"Atp2a3:NM_001163336:exon14:c.A2040G:p.E680E,Atp2a3:NM_001163337:exon14:c.A2040G:p.E680E,Atp2a3:NM_016745:exon14:c.A2040G:p.E680E"	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.525985106	2	0.9797242	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	73008107	12A2p6	cell line	sgMsh2	73008107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	143	0	0	NA	exonic	P2rx1	nonsynonymous SNV	P2rx1:NM_008771:exon2:c.T143C:p.V48A	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.507199924	2	0.9616845	GTG	nonsynonymous	GGTG	8	GGTGGGTG	NA
M6_p20	chr11	73075717	12A2p6	cell line	sgMsh2	73075717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	177	0	0	NA	exonic	Ncbp3	synonymous SNV	Ncbp3:NM_025818:exon11:c.T1398C:p.D466D	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.549466584	2	0.9986799	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr11	73354368	12A2p6	cell line	sgMsh2	73354368	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	615	0	0	NA	exonic	Olfr20	nonsynonymous SNV	Olfr20:NM_146923:exon2:c.T614G:p.L205R	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.624607314	2	1.13E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	73814500	12A2p6	cell line	sgMsh2	73814500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	226	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T581C:p.V194A	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.934562823	1	0.999999	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	73814508	12A2p6	cell line	sgMsh2	73814508	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	232	0	0	NA	exonic	Olfr392	synonymous SNV	Olfr392:NM_147006:exon2:c.C573T:p.D191D	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.868814685	1	0.9999136	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr11	73906934	12A2p6	cell line	sgMsh2	73906934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	353	0	0	NA	exonic	Olfr395	nonsynonymous SNV	Olfr395:NM_147005:exon1:c.A557G:p.K186R	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.62930361	2	0.9999962	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	73907191	12A2p6	cell line	sgMsh2	73907191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	622	0	0	NA	exonic	Olfr395	synonymous SNV	Olfr395:NM_147005:exon1:c.G300A:p.Q100Q	11qB4	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.328740692	3	1.00E-09	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr11	74122125	12A2p6	cell line	sgMsh2	74122125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	452	0	0	NA	exonic	Olfr401	nonsynonymous SNV	Olfr401:NM_146706:exon1:c.A835G:p.I279V	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.779585069	1	0.9953818	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	74784202	12A2p6	cell line	sgMsh2	74784202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	197	0	0	NA	exonic	Mettl16	synonymous SNV	Mettl16:NM_026197:exon3:c.T273C:p.D91D	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.896992458	1	0.9999398	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	228	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.248903666	3	2.77E-08	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	75167319	12A2p6	cell line	sgMsh2	75167319	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	24	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T263C:p.M88T,Hic1:NM_010430:exon2:c.T743C:p.M248T"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.939259119	1	0.8376615	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	75432703	12A2p6	cell line	sgMsh2	75432703	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	111	0	0	NA	exonic	Serpinf2	synonymous SNV	Serpinf2:NM_008878:exon10:c.G1176A:p.E392E	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9998936	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr11	75490344	12A2p6	cell line	sgMsh2	75490344	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	198	0	0	NA	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon5:c.C669A:p.S223S	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.230118484	3	0.9999999	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr11	75637419	12A2p6	cell line	sgMsh2	75637419	G	-	Deletion	Mutect2;Vardict	2	0.163	107	0	0	NA	exonic	Inpp5k	frameshift deletion	Inpp5k:NM_008916:exon5:c.442delG:p.G149Efs*5	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.765496182	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6_p20	chr11	76202236	12A2p6	cell line	sgMsh2	76202236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	20	0	0	NA	exonic	Tlcd3a	nonsynonymous SNV	Tlcd3a:NM_027773:exon1:c.T103A:p.C35S	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.854985	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	99	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.610518427	2	0.979617	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr11	76250233	12A2p6	cell line	sgMsh2	76250233	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	92	0	0	NA	exonic	Mrm3	nonsynonymous SNV	Mrm3:NM_183263:exon4:c.G1066A:p.E356K	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9995049	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	81	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.479022151	2	0.7778214	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	76424923	12A2p6	cell line	sgMsh2	76424923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	77	0	0	NA	exonic	Abr	nonsynonymous SNV	"Abr:NM_001363379:exon3:c.T323C:p.V108A,Abr:NM_001291186:exon13:c.T1298C:p.V433A,Abr:NM_001346670:exon17:c.T1841C:p.V614A,Abr:NM_198018:exon17:c.T1988C:p.V663A,Abr:NM_198894:exon18:c.T1814C:p.V605A,Abr:NM_198895:exon18:c.T1952C:p.V651A"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.835940616	1	0.9181974	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	77455152	12A2p6	cell line	sgMsh2	77455152	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	125	0	0	NA	exonic	Ssh2	nonsynonymous SNV	"Ssh2:NM_001291190:exon14:c.A3962T:p.Q1321L,Ssh2:NM_177710:exon15:c.A3944T:p.Q1315L"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.962740597	1	0.9998515	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	77477532	12A2p6	cell line	sgMsh2	77477532	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.141	61	0	0	NA	exonic	Ankrd13b	nonsynonymous SNV	"Ankrd13b:NM_001373882:exon3:c.C263T:p.A88V,Ankrd13b:NM_001373883:exon3:c.C263T:p.A88V,Ankrd13b:NM_172945:exon3:c.C263T:p.A88V"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.662177679	2	0.7971805	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	77692371	12A2p6	cell line	sgMsh2	77692371	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	162	0	0	NA	exonic	Nufip2	synonymous SNV	Nufip2:NM_001024205:exon2:c.A1110G:p.V370V	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.272385144	3	0.9999788	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	77777511	12A2p6	cell line	sgMsh2	77777511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291212:exon1:c.A196G:p.I66V,Myo18a:NM_001291213:exon1:c.A196G:p.I66V,Myo18a:NM_011586:exon1:c.A196G:p.I66V"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.939259119	1	0.9950048	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	77983351	12A2p6	cell line	sgMsh2	77983351	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	79	0	0	NA	exonic	Phf12	synonymous SNV	Phf12:NM_174852:exon1:c.T40C:p.L14L	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.408577717	3	8.59E-05	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	78190492	12A2p6	cell line	sgMsh2	78190492	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	309	0	0	NA	exonic	Rab34	nonsynonymous SNV	"Rab34:NM_033475:exon5:c.G329A:p.G110D,Rab34:NM_001159482:exon6:c.G329A:p.G110D"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.244207371	3	1.02E-09	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	78366894	12A2p6	cell line	sgMsh2	78366894	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	134	0	0	NA	exonic	Foxn1	nonsynonymous SNV	"Foxn1:NM_001277290:exon5:c.T800G:p.L267R,Foxn1:NM_008238:exon5:c.T803G:p.L268R"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.662177679	2	0.9625102	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	78467118	12A2p6	cell line	sgMsh2	78467118	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	123	0	0	NA	exonic	Slc46a1	synonymous SNV	Slc46a1:NM_026740:exon2:c.C996T:p.T332T	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.497807333	2	0.9191374	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr11	78515125	12A2p6	cell line	sgMsh2	78515125	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	221	0	0	NA	exonic	Poldip2	nonsynonymous SNV	Poldip2:NM_026389:exon3:c.T281A:p.V94D	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	1.55E-08	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	78589348	12A2p6	cell line	sgMsh2	78589348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	158	0	0	NA	exonic	Nlk	nonsynonymous SNV	Nlk:NM_008702:exon5:c.T794G:p.I265S	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.939259119	1	0.9999513	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	78929831	12A2p6	cell line	sgMsh2	78929831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	162	0	0	NA	exonic	Nos2	synonymous SNV	Nos2:NM_010927:exon4:c.A261C:p.G87G	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.962740597	1	0.9999885	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr11	78952980	12A2p6	cell line	sgMsh2	78952980	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	80	0	0	NA	exonic	Nos2	nonsynonymous SNV	"Nos2:NM_001313921:exon21:c.A2413G:p.T805A,Nos2:NM_001313922:exon21:c.A2413G:p.T805A,Nos2:NM_010927:exon22:c.A2752G:p.T918A"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.450844377	2	0.5988588	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	79680895	12A2p6	cell line	sgMsh2	79680895	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	47	0	0	NA	exonic	Rab11fip4	synonymous SNV	Rab11fip4:NM_175543:exon4:c.C444A:p.P148P	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.90638505	1	0.9297223	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr11	80226080	12A2p6	cell line	sgMsh2	80226080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	119	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001163354:exon5:c.A279G:p.I93M,Rhot1:NM_001163355:exon5:c.A279G:p.I93M,Rhot1:NM_001362868:exon5:c.A279G:p.I93M,Rhot1:NM_021536:exon5:c.A279G:p.I93M"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.502503628	2	0.9297609	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	80226108	12A2p6	cell line	sgMsh2	80226108	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	115	0	0	NA	exonic	Rhot1	nonsynonymous SNV	"Rhot1:NM_001163354:exon5:c.A307T:p.I103F,Rhot1:NM_001163355:exon5:c.A307T:p.I103F,Rhot1:NM_001362868:exon5:c.A307T:p.I103F,Rhot1:NM_021536:exon5:c.A307T:p.I103F"	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.521288811	2	0.9652238	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	80330582	12A2p6	cell line	sgMsh2	80330582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	90	0	0	NA	exonic	Rhbdl3	nonsynonymous SNV	Rhbdl3:NM_139228:exon5:c.T545C:p.V182A	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.779585069	1	0.7687711	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	189	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.479022151	2	0.8848064	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	81572854	12A2p6	cell line	sgMsh2	81572854	T	-	Deletion	Mutect2;Vardict	2	0.106	142	0	0	NA	exonic	1700071K01Rik	frameshift deletion	1700071K01Rik:NM_001033765:exon1:c.620delA:p.K207Rfs*16	11qB5	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.497807333	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr11	82785352	12A2p6	cell line	sgMsh2	82785352	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	168	0	0	NA	exonic	Lig3	nonsynonymous SNV	"Lig3:NM_001291245:exon3:c.A588C:p.K196N,Lig3:NM_001291246:exon3:c.A588C:p.K196N,Lig3:NM_001291247:exon3:c.A588C:p.K196N,Lig3:NM_010716:exon3:c.A588C:p.K196N"	11qC	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.94865171	1	0.999984	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M6_p20	chr11	82881778	12A2p6	cell line	sgMsh2	82881778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	73	0	0	NA	exonic	Rad51d	synonymous SNV	"Rad51d:NM_001277941:exon6:c.G525A:p.Q175Q,Rad51d:NM_001277939:exon7:c.G660A:p.Q220Q,Rad51d:NM_011235:exon7:c.G660A:p.Q220Q"	11qC	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	0.953348005	1	0.9933076	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr11	82901049	12A2p6	cell line	sgMsh2	82901049	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.222	27	0	0	NA	exonic	Nle1	nonsynonymous SNV	Nle1:NM_145431:exon13:c.T1447C:p.W483R	11qC	chr11-69590981-82929860	4	4	0	0.93	4.367554902	NA	1	1	1	0.9127268	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	83213533	12A2p6	cell line	sgMsh2	83213533	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	290	0	0	NA	exonic	Slfn3	nonsynonymous SNV	Slfn3:NM_011409:exon2:c.A860C:p.E287A	11qC	chr11-83185009-83339739	6.84155842	NA	NA	0.93	4.367554902	NA	NA	0.882903572	1	0.9999976	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	83422063	12A2p6	cell line	sgMsh2	83422063	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	96	0	0	NA	exonic	Gas2l2	nonsynonymous SNV	Gas2l2:NM_001013759:exon6:c.G2422T:p.G808W	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.8652178	CCT	nonsynonymous	CCCT	8	CCCTCCCT	NA
M6_p20	chr11	83487390	12A2p6	cell line	sgMsh2	83487390	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	327	0	0	NA	exonic	Taf15	frameshift deletion	Taf15:NM_027427:exon6:c.455delA:p.N153Tfs*12	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.845333207	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr11	83588833	12A2p6	cell line	sgMsh2	83588833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	156	0	0	NA	exonic	Ccl6	nonsynonymous SNV	Ccl6:NM_009139:exon4:c.A343G:p.I115V	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999972	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	320	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999974	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	341	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	86061449	12A2p6	cell line	sgMsh2	86061449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	183	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3505G:p.T1169A	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.99317	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	238	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.300562918	3	0.9999988	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	160	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9987201	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	301	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999942	CAA	synonymous	CCT	8	CCTCCTCC	NA
M6_p20	chr11	86272531	12A2p6	cell line	sgMsh2	86272531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	336	0	0	NA	exonic	Med13	synonymous SNV	Med13:NM_001080931:exon29:c.A6315G:p.Q2105Q	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9970165	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr11	86328609	12A2p6	cell line	sgMsh2	86328609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	190	0	0	NA	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon7:c.T1010C:p.V337A	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.9999911	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	86486138	12A2p6	cell line	sgMsh2	86486138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	133	0	0	NA	exonic	Rnft1	synonymous SNV	Rnft1:NM_029788:exon2:c.T27C:p.H9H	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5671034	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr11	86491688	12A2p6	cell line	sgMsh2	86491688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	181	0	0	NA	exonic	Rnft1	nonsynonymous SNV	Rnft1:NM_029788:exon6:c.T736C:p.Y246H	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9975217	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	61	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.8441306	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	87	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9762397	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	87196947	12A2p6	cell line	sgMsh2	87196947	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	103	0	0	NA	exonic	Trim37	nonsynonymous SNV	"Trim37:NM_001363026:exon17:c.A1838T:p.D613V,Trim37:NM_001363025:exon18:c.A1883T:p.D628V,Trim37:NM_001363027:exon18:c.A1883T:p.D628V,Trim37:NM_001363028:exon18:c.A1883T:p.D628V,Trim37:NM_197987:exon18:c.A1883T:p.D628V"	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.281777736	3	0.9980413	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	29	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.8210137	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	87775042	12A2p6	cell line	sgMsh2	87775042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	52	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon17:c.T2605C:p.C869R	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9875423	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	88943840	12A2p6	cell line	sgMsh2	88943840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	160	0	0	NA	exonic	Scpep1	nonsynonymous SNV	Scpep1:NM_029023:exon5:c.A503G:p.Y168C	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.8546385	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	88965039	12A2p6	cell line	sgMsh2	88965039	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	162	0	0	NA	exonic	Elobl	nonsynonymous SNV	Elobl:NM_001360780:exon3:c.T197C:p.V66A	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9985815	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	148	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.6846849	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	90683283	12A2p6	cell line	sgMsh2	90683283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	218	0	0	NA	exonic	Tom1l1	synonymous SNV	"Tom1l1:NM_001357543:exon3:c.A174G:p.K58K,Tom1l1:NM_001357544:exon3:c.A174G:p.K58K"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9999586	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	137	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.8510714	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	72	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9748158	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	94463486	12A2p6	cell line	sgMsh2	94463486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	73	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon5:c.T602C:p.V201A,Cacna1g:NM_001177888:exon5:c.T602C:p.V201A,Cacna1g:NM_001177890:exon5:c.T602C:p.V201A,Cacna1g:NM_009783:exon5:c.T602C:p.V201A"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	8.90E-06	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	94509328	12A2p6	cell line	sgMsh2	94509328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	122	0	0	NA	exonic	Mycbpap	nonsynonymous SNV	Mycbpap:NM_170671:exon10:c.T1142C:p.M381T	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.8278074	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	94632131	12A2p6	cell line	sgMsh2	94632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	345	0	0	NA	exonic	Lrrc59	synonymous SNV	Lrrc59:NM_133807:exon2:c.T156C:p.S52S	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.915777641	1	6.97E-09	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	90	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.999418	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	94757126	12A2p6	cell line	sgMsh2	94757126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	372	0	0	NA	exonic	Gm11545	synonymous SNV	Gm11545:NM_001105561:exon5:c.A432G:p.P144P	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9999995	GTG	synonymous	GGA	8	GGAGGAGG	NA
M6_p20	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	102	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9884157	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	95051493	12A2p6	cell line	sgMsh2	95051493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	139	0	0	NA	exonic	Itga3	nonsynonymous SNV	"Itga3:NM_001306071:exon22:c.A2791G:p.T931A,Itga3:NM_013565:exon23:c.A2884G:p.T962A,Itga3:NM_001306162:exon24:c.A2884G:p.T962A"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5504127	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	160	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6675787	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	96957655	12A2p6	cell line	sgMsh2	96957655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	103	0	0	NA	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon4:c.A1138G:p.T380A,Sp2:NM_001363226:exon4:c.A1123G:p.T375A,Sp2:NM_030220:exon4:c.A1141G:p.T381A,Sp2:NM_001363225:exon5:c.A1123G:p.T375A"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9542486	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	97099192	12A2p6	cell line	sgMsh2	97099192	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	60	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon6:c.A1173C:p.E391D	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	9.36E-05	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	97231984	12A2p6	cell line	sgMsh2	97231984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	140	0	0	NA	exonic	Npepps	nonsynonymous SNV	Npepps:NM_008942:exon13:c.A1444G:p.S482G	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	9.14E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	97349754	12A2p6	cell line	sgMsh2	97349754	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	182	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon3:c.A842G:p.Q281R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9993552	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	97351581	12A2p6	cell line	sgMsh2	97351581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	49	0	0	NA	exonic	Gpr179	synonymous SNV	Gpr179:NM_001081220:exon2:c.A436C:p.R146R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9841726	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	157	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.8211916	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	98109543	12A2p6	cell line	sgMsh2	98109543	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	122	0	0	NA	exonic	Fbxl20	nonsynonymous SNV	Fbxl20:NM_028149:exon6:c.A349G:p.R117G	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.9941421	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	98398962	12A2p6	cell line	sgMsh2	98398962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	156	0	0	NA	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon2:c.T202C:p.C68R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999972	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	135	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	0.9339552	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	127	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.446148081	2	0.5045772	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr11	99234927	12A2p6	cell line	sgMsh2	99234927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	81	0	0	NA	exonic	Krt222	nonsynonymous SNV	"Krt222:NM_001361584:exon6:c.A757G:p.T253A,Krt222:NM_172946:exon6:c.A877G:p.T293A"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.969368	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	99388055	12A2p6	cell line	sgMsh2	99388055	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	290	0	0	NA	exonic	Krt10	nonsynonymous SNV	Krt10:NM_010660:exon2:c.T632G:p.L211R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9904601	CAG	nonsynonymous	GCA	9	GCAGCAGCA	NA
M6_p20	chr11	99416087	12A2p6	cell line	sgMsh2	99416087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	145	0	0	NA	exonic	Krt12	nonsynonymous SNV	Krt12:NM_010661:exon8:c.T1388C:p.I463T	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9811845	GAT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr11	99492993	12A2p6	cell line	sgMsh2	99492993	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	14	0	0	NA	exonic	Krt23	synonymous SNV	Krt23:NM_033373:exon1:c.G72A:p.R24R	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.7804278	GCC	synonymous	C	5	CCCCC	NA
M6_p20	chr11	100037746	12A2p6	cell line	sgMsh2	100037746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	259	0	0	NA	exonic	Krt34	synonymous SNV	Krt34:NM_027563:exon7:c.T1152C:p.P384P	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.9980014	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr11	100049530	12A2p6	cell line	sgMsh2	100049530	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	108	0	0	NA	exonic	Krt31	synonymous SNV	Krt31:NM_010659:exon3:c.G498A:p.L166L	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998644	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr11	100463034	12A2p6	cell line	sgMsh2	100463034	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	198	0	0	NA	exonic	Klhl11	nonsynonymous SNV	Klhl11:NM_172565:exon2:c.A1960T:p.R654W	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9990894	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	100767017	12A2p6	cell line	sgMsh2	100767017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	78	0	0	NA	exonic	Ghdc	nonsynonymous SNV	Ghdc:NM_031871:exon9:c.A1385G:p.N462S	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9984643	GTT	nonsynonymous	GCAG	8	GCAGGCAG	NA
M6_p20	chr11	101159134	12A2p6	cell line	sgMsh2	101159134	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	220	0	0	NA	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon6:c.T605A:p.V202E	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9988139	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	101174536	12A2p6	cell line	sgMsh2	101174536	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	78	0	0	NA	exonic	Ccr10	nonsynonymous SNV	Ccr10:NM_007721:exon2:c.T167A:p.L56Q	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	8.84E-05	CAG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M6_p20	chr11	101325361	12A2p6	cell line	sgMsh2	101325361	A	G	SNV	Mutect2;Vardict	2	0.081	136	0	0	NA	exonic	Aoc2	nonsynonymous SNV	Aoc2:NM_178932:exon1:c.A269G:p.N90S	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.9675556	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	101460511	12A2p6	cell line	sgMsh2	101460511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	102	0	0	NA	exonic	Vat1	nonsynonymous SNV	Vat1:NM_012037:exon5:c.G1003T:p.A335S	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9829599	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	107	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.999484	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	102205371	12A2p6	cell line	sgMsh2	102205371	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	98	0	0	NA	exonic	Hdac5	synonymous SNV	"Hdac5:NM_001077696:exon9:c.C921T:p.P307P,Hdac5:NM_001284250:exon9:c.C918T:p.P306P,Hdac5:NM_010412:exon9:c.C918T:p.P306P,Hdac5:NM_001284249:exon10:c.C795T:p.P265P,Hdac5:NM_001361596:exon10:c.C795T:p.P265P,Hdac5:NM_001284248:exon11:c.C975T:p.P325P"	11qD	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9996953	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr11	102868646	12A2p6	cell line	sgMsh2	102868646	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	160	0	0	NA	exonic	Eftud2	nonsynonymous SNV	"Eftud2:NM_001109995:exon6:c.T433C:p.F145L,Eftud2:NM_011431:exon6:c.T430C:p.F144L"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9970139	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Vardict	2	0.081	53	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.000793817	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	68	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9253452	CCC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr11	103543231	12A2p6	cell line	sgMsh2	103543231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	293	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.A2583T:p.Q861H	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	1.10E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	103827260	12A2p6	cell line	sgMsh2	103827260	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	355	0	0	NA	exonic	Nsf	nonsynonymous SNV	Nsf:NM_008740:exon19:c.T2108G:p.V703G	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9968278	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	104637134	12A2p6	cell line	sgMsh2	104637134	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	137	0	0	NA	exonic	Itgb3	nonsynonymous SNV	Itgb3:NM_016780:exon5:c.G694A:p.V232M	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.493111037	2	0.9160148	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	105108949	12A2p6	cell line	sgMsh2	105108949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	100	0	0	NA	exonic	Efcab3	synonymous SNV	Efcab3:NM_001081046:exon7:c.A663G:p.K221K	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	5.78E-06	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	105385472	12A2p6	cell line	sgMsh2	105385472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	74	0	0	NA	exonic	Marchf10	synonymous SNV	Marchf10:NM_172568:exon8:c.A1989G:p.L663L	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9978784	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr11	105972931	12A2p6	cell line	sgMsh2	105972931	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	193	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_001281819:exon8:c.T1204C:p.Y402H,Ace:NM_207624:exon8:c.T1204C:p.Y402H"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.929866528	1	0.9999901	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	166	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.9980881	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106205422	12A2p6	cell line	sgMsh2	106205422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	285	0	0	NA	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.T775C:p.Y259H	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.9094877	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106205433	12A2p6	cell line	sgMsh2	106205433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	272	0	0	NA	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.A764G:p.D255G	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.987186	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	306	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999919	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106327590	12A2p6	cell line	sgMsh2	106327590	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	69	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon16:c.G3047T:p.R1016M	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9424704	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106330112	12A2p6	cell line	sgMsh2	106330112	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	148	0	0	NA	exonic	Scn4a	frameshift deletion	Scn4a:NM_133199:exon14:c.2720delA:p.N907Tfs*85	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.953348005	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr11	106376336	12A2p6	cell line	sgMsh2	106376336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	54	0	0	NA	exonic	Prr29	nonsynonymous SNV	Prr29:NM_029345:exon4:c.A326G:p.Y109C	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.9683834	TAC	nonsynonymous	CTTGC	11	CTTGCCTTGCC	NA
M6_p20	chr11	106423395	12A2p6	cell line	sgMsh2	106423395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	154	0	0	NA	exonic	Ern1	nonsynonymous SNV	Ern1:NM_023913:exon7:c.T578C:p.V193A	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5838534	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106751363	12A2p6	cell line	sgMsh2	106751363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	244	0	0	NA	exonic	Milr1	nonsynonymous SNV	"Milr1:NM_001033435:exon1:c.T80C:p.L27P,Milr1:NM_001271372:exon1:c.T80C:p.L27P,Milr1:NM_001271373:exon1:c.T80C:p.L27P,Milr1:NM_001271374:exon1:c.T80C:p.L27P,Milr1:NM_001271375:exon1:c.T80C:p.L27P"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.999441	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106779085	12A2p6	cell line	sgMsh2	106779085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	103	0	0	NA	exonic	Polg2	nonsynonymous SNV	"Polg2:NM_001353435:exon1:c.A358G:p.R120G,Polg2:NM_015810:exon1:c.A358G:p.R120G"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	7.04E-06	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.09	128	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.7537412	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	107252023	12A2p6	cell line	sgMsh2	107252023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	414	0	0	NA	exonic	Pitpnc1	nonsynonymous SNV	"Pitpnc1:NM_001359616:exon6:c.A461G:p.E154G,Pitpnc1:NM_145823:exon6:c.A461G:p.E154G"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	2.45E-08	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	107671123	12A2p6	cell line	sgMsh2	107671123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	80	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon29:c.T4635C:p.H1545H,Helz:NM_001368755:exon30:c.T4632C:p.H1544H"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.61102	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	135	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9959864	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	107734998	12A2p6	cell line	sgMsh2	107734998	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	106	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.A766C:p.R256R	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9995958	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	107735260	12A2p6	cell line	sgMsh2	107735260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	118	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.T504C:p.S168S	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9934018	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr11	109936435	12A2p6	cell line	sgMsh2	109936435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	206	0	0	NA	exonic	Abca8b	nonsynonymous SNV	"Abca8b:NM_001362749:exon35:c.A4346G:p.Y1449C,Abca8b:NM_013851:exon36:c.A4532G:p.Y1511C"	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	4.97E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	110078743	12A2p6	cell line	sgMsh2	110078743	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	105	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon8:c.T1006A:p.L336M	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998271	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	110151971	12A2p6	cell line	sgMsh2	110151971	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	204	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon9:c.G1251A:p.A417A	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr11	110210173	12A2p6	cell line	sgMsh2	110210173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	334	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon21:c.T2786C:p.I929T	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9953767	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	315	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9995169	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	80	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	9.34E-06	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	113625125	12A2p6	cell line	sgMsh2	113625125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	97	0	0	NA	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.T869C:p.L290P,Sstr2:NM_009217:exon2:c.T869C:p.L290P"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.9865421	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	113842148	12A2p6	cell line	sgMsh2	113842148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	83	0	0	NA	exonic	Sdk2	nonsynonymous SNV	Sdk2:NM_172800:exon21:c.A2870G:p.Y957C	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.8986774	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	114987450	12A2p6	cell line	sgMsh2	114987450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	506	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.C235A:p.R79S	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.8157709	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	115261107	12A2p6	cell line	sgMsh2	115261107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	10	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T26C:p.L9P	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	2	1	1	0.7127846	CAG	nonsynonymous	GGGC	8	GGGCGGGC	NA
M6_p20	chr11	115587966	12A2p6	cell line	sgMsh2	115587966	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	94	0	0	NA	exonic	Gga3	synonymous SNV	"Gga3:NM_001252067:exon11:c.A984G:p.S328S,Gga3:NM_173048:exon12:c.A1218G:p.S406S"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.441451786	2	7.91E-05	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	97	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.375703647	3	0.916853	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	115797158	12A2p6	cell line	sgMsh2	115797158	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.118	69	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon28:c.T3530A:p.L1177Q	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9403184	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	115848252	12A2p6	cell line	sgMsh2	115848252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	58	0	0	NA	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon10:c.A948G:p.S316S,Llgl2:NM_145438:exon10:c.A948G:p.S316S"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.875186	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	114	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9266031	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	116106514	12A2p6	cell line	sgMsh2	116106514	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	62	0	0	NA	exonic	Trim47	synonymous SNV	"Trim47:NM_001205081:exon6:c.C1416T:p.C472C,Trim47:NM_172570:exon6:c.C1413T:p.C471C"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7083575	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	74	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.9649487	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	208	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.23481478	3	4.44E-08	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	116852120	12A2p6	cell line	sgMsh2	116852120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	125	0	0	NA	exonic	Srsf2	nonsynonymous SNV	Srsf2:NM_011358:exon2:c.C574T:p.P192S	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9887542	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	91	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9807814	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	117812466	12A2p6	cell line	sgMsh2	117812466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	122	0	0	NA	exonic	Syngr2	nonsynonymous SNV	Syngr2:NM_009304:exon2:c.C107T:p.A36V	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6195386	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	119447328	12A2p6	cell line	sgMsh2	119447328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	280	0	0	NA	exonic	Rnf213	synonymous SNV	Rnf213:NM_001040005:exon32:c.T10155C:p.G3385G	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9996461	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr11	119486149	12A2p6	cell line	sgMsh2	119486149	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	148	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon68:c.A15438C:p.Q5146H	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9909333	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120271785	12A2p6	cell line	sgMsh2	120271785	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	33	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.G908C:p.G303A	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9445113	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	33	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.853511	TAC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr11	120347261	12A2p6	cell line	sgMsh2	120347261	A	C	SNV	Mutect2;Vardict	2	0.125	62	0	0	NA	exonic	Actg1	nonsynonymous SNV	"Actg1:NM_009609:exon4:c.T452G:p.I151S,Actg1:NM_001313923:exon5:c.T86G:p.I29S"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9239731	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.139	129	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9706547	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr11	120444528	12A2p6	cell line	sgMsh2	120444528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	70	0	0	NA	exonic	Tspan10	nonsynonymous SNV	Tspan10:NM_145363:exon2:c.G463A:p.A155T	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9970698	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	61	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9876974	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120478523	12A2p6	cell line	sgMsh2	120478523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	49	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon13:c.C1037T:p.P346L,Hgs:NM_008244:exon13:c.C1037T:p.P346L"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.9818348	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	75	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.7697336	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	120788491	12A2p6	cell line	sgMsh2	120788491	T	C	SNV	Mutect2;Vardict	2	0.055	143	0	0	NA	exonic	Gps1	synonymous SNV	"Gps1:NM_001177874:exon13:c.T1284C:p.R428R,Gps1:NM_001346709:exon13:c.T1284C:p.R428R,Gps1:NM_001363440:exon13:c.T1281C:p.R427R,Gps1:NM_145370:exon13:c.T1401C:p.R467R"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.258296258	3	0.9999621	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	169	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9962331	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr11	121460477	12A2p6	cell line	sgMsh2	121460477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	182	0	0	NA	exonic	Tbcd	synonymous SNV	Tbcd:NM_029878:exon4:c.T402C:p.D134D	11qE2	chr11-83350706-121956668	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999997	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr12	3984561	12A2p6	cell line	sgMsh2	3984561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	64	0	0	NA	exonic	Efr3b	nonsynonymous SNV	Efr3b:NM_001082483:exon6:c.A608G:p.N203S	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9952465	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	4850510	12A2p6	cell line	sgMsh2	4850510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	94	0	0	NA	exonic	Wdcp	nonsynonymous SNV	"Wdcp:NM_001170858:exon2:c.A365G:p.H122R,Wdcp:NM_173416:exon2:c.A365G:p.H122R"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9995789	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	4891350	12A2p6	cell line	sgMsh2	4891350	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	538	0	0	NA	exonic	Ubxn2a	synonymous SNV	Ubxn2a:NM_145441:exon4:c.T255G:p.G85G	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.483718446	2	0.9959838	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	7978239	12A2p6	cell line	sgMsh2	7978239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	148	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon2:c.T109G:p.F37V	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.493111037	2	9.55E-06	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	8713572	12A2p6	cell line	sgMsh2	8713572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	141	0	0	NA	exonic	Pum2	nonsynonymous SNV	"Pum2:NM_001160219:exon6:c.T728C:p.V243A,Pum2:NM_001160220:exon6:c.T728C:p.V243A,Pum2:NM_001160221:exon6:c.T728C:p.V243A,Pum2:NM_001160222:exon6:c.T728C:p.V243A,Pum2:NM_001310519:exon6:c.T728C:p.V243A,Pum2:NM_030723:exon6:c.T728C:p.V243A"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999906	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	117	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.59642954	2	0.9934783	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	11091884	12A2p6	cell line	sgMsh2	11091884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	134	0	0	NA	exonic	Kcns3	synonymous SNV	"Kcns3:NM_001168564:exon3:c.T813C:p.A271A,Kcns3:NM_173417:exon3:c.T813C:p.A271A"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.774888773	1	0.8191027	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	11242309	12A2p6	cell line	sgMsh2	11242309	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	189	0	0	NA	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon14:c.A1673G:p.K558R	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.314651805	3	0.9999362	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	11291704	12A2p6	cell line	sgMsh2	11291704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	54	0	0	NA	exonic	Smc6	synonymous SNV	"Smc6:NM_001324476:exon14:c.G1128T:p.R376R,Smc6:NM_025695:exon15:c.G1722T:p.R574R"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9893843	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr12	11457116	12A2p6	cell line	sgMsh2	11457116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	171	0	0	NA	exonic	Rad51ap2	synonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1038G:p.V346V	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.62930361	2	0.997412	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr12	13441908	12A2p6	cell line	sgMsh2	13441908	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	184	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon38:c.T4499G:p.L1500R	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.558859176	2	0.9994386	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	16822106	12A2p6	cell line	sgMsh2	16822106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	376	0	0	NA	exonic	E2f6	nonsynonymous SNV	E2f6:NM_033270:exon5:c.A550T:p.T184S	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.516592515	2	0.9998352	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	16965596	12A2p6	cell line	sgMsh2	16965596	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.099	92	0	0	NA	exonic	Rock2	synonymous SNV	Rock2:NM_009072:exon20:c.T2493C:p.N831N	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.464933264	2	0.7002501	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr12	17297790	12A2p6	cell line	sgMsh2	17297790	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	104	0	0	NA	exonic	Atp6v1c2	nonsynonymous SNV	"Atp6v1c2:NM_133699:exon6:c.T409C:p.S137P,Atp6v1c2:NM_001159632:exon7:c.T439C:p.S147P"	12qA1.1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.422666603	3	0.6862885	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	21394991	12A2p6	cell line	sgMsh2	21394991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	166	0	0	NA	exonic	Ywhaq	nonsynonymous SNV	Ywhaq:NM_011739:exon4:c.A652G:p.M218V	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.7957277	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	24044796	12A2p6	cell line	sgMsh2	24044796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	254	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	9030624G23Rik:NM_001256489:exon4:c.T373C:p.C125R	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.455540673	2	0.5653007	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	24712686	12A2p6	cell line	sgMsh2	24712686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	211	0	0	NA	exonic	Rrm2	nonsynonymous SNV	Rrm2:NM_009104:exon8:c.T827C:p.L276P	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.948234	CTG	nonsynonymous	TGCC	10	TGCCTGCCTG	NA
M6_p20	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	249	0	0	NA	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.23481478	3	2.35E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	26474158	12A2p6	cell line	sgMsh2	26474158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	188	0	0	NA	exonic	Cmpk2	nonsynonymous SNV	Cmpk2:NM_020557:exon3:c.T953C:p.I318T	12qA2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.67157027	2	0.983112	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	30119426	12A2p6	cell line	sgMsh2	30119426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	281	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon4:c.T309C:p.R103R	12qA2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.699748043	2	0.9749703	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	31287946	12A2p6	cell line	sgMsh2	31287946	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	317	0	0	NA	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon10:c.G1257A:p.V419V	12qA2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.9997688	TGG	synonymous	NA	NA	NA	NA
M6_p20	chr12	31302992	12A2p6	cell line	sgMsh2	31302992	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	93	0	0	NA	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon19:c.G2547C:p.R849R	12qA2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.342829578	3	0.9684745	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	431	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.220725893	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	31928627	12A2p6	cell line	sgMsh2	31928627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	252	0	0	NA	exonic	Hbp1	nonsynonymous SNV	"Hbp1:NM_001361928:exon10:c.A1490G:p.K497R,Hbp1:NM_153198:exon10:c.A1520G:p.K507R"	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.695051748	2	0.9744222	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	31930939	12A2p6	cell line	sgMsh2	31930939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	97	0	0	NA	exonic	Hbp1	synonymous SNV	"Hbp1:NM_001361928:exon9:c.T1134C:p.R378R,Hbp1:NM_153198:exon9:c.T1164C:p.R388R,Hbp1:NM_177993:exon9:c.T1164C:p.R388R"	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.568251767	2	0.9848424	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	33364412	12A2p6	cell line	sgMsh2	33364412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	116	0	0	NA	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374024:exon8:c.A1158G:p.S386S,Atxn7l1:NM_001374022:exon10:c.A1530G:p.S510S"	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.469629559	2	0.750359	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	36119017	12A2p6	cell line	sgMsh2	36119017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	261	0	0	NA	exonic	Bzw2	nonsynonymous SNV	Bzw2:NM_025840:exon6:c.A511G:p.S171G	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.479022151	2	0.9281959	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	281	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.27708144	3	8.83E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	41452717	12A2p6	cell line	sgMsh2	41452717	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	193	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.G1600A:p.A534T,Lrrn3:NM_010733:exon2:c.G1600A:p.A534T,Lrrn3:NM_001271708:exon3:c.G1600A:p.A534T"	12qB1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.422666603	3	0.8837221	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	167	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.737318408	2	8.18E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	44566323	12A2p6	cell line	sgMsh2	44566323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	204	0	0	NA	exonic	Nrcam	nonsynonymous SNV	"Nrcam:NM_001146031:exon17:c.A1796G:p.D599G,Nrcam:NM_176930:exon17:c.A1796G:p.D599G"	12qB2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.67157027	2	0.9881556	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	170	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.314651805	3	0.9998198	CTG	synonymous	ACCT	8	ACCTACCT	NA
M6_p20	chr12	50385204	12A2p6	cell line	sgMsh2	50385204	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.12	101	0	0	NA	exonic	Prkd1	synonymous SNV	"Prkd1:NM_001382814:exon12:c.A1731C:p.T577T,Prkd1:NM_008858:exon13:c.A1755C:p.T585T"	12qB3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.563555471	2	0.9863967	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr12	51603211	12A2p6	cell line	sgMsh2	51603211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	123	0	0	NA	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon10:c.A982G:p.N328D,Coch:NM_001198835:exon11:c.A982G:p.N328D"	12qB3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	1	0.9998578	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	51621886	12A2p6	cell line	sgMsh2	51621886	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	190	0	0	NA	exonic	Strn3	synonymous SNV	"Strn3:NM_001172098:exon13:c.C1668T:p.G556G,Strn3:NM_001364437:exon14:c.C1809T:p.G603G,Strn3:NM_052973:exon15:c.C1920T:p.G640G"	12qB3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.432059195	3	0.7882075	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr12	51769296	12A2p6	cell line	sgMsh2	51769296	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	124	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon25:c.A3992C:p.D1331A	12qB3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999628	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	51952607	12A2p6	cell line	sgMsh2	51952607	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	62	0	0	NA	exonic	Heatr5a	nonsynonymous SNV	Heatr5a:NM_177171:exon7:c.A810C:p.E270D	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.469629559	2	0.7083575	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	51956223	12A2p6	cell line	sgMsh2	51956223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	179	0	0	NA	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon5:c.T495C:p.T165T	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.939259119	1	0.9999867	CAG	synonymous	CCCAG	10	CCCAGCCCAG	NA
M6_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	41	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.5664182	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	53141873	12A2p6	cell line	sgMsh2	53141873	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	319	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon13:c.T6069A:p.S2023R	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.535377698	2	0.9999416	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	54203530	12A2p6	cell line	sgMsh2	54203530	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	57	0	0	NA	exonic	Egln3	nonsynonymous SNV	Egln3:NM_028133:exon1:c.T32C:p.L11P	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.549466584	2	0.9000353	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Vardict	2	0.111	129	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.521288811	NA	NA	TGT	frameshift	NA	NA	NA	-1
M6_p20	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Vardict	2	0.061	307	0	0	NA	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.286474031	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M6_p20	chr12	55708096	12A2p6	cell line	sgMsh2	55708096	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	69	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001112714:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_019994:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001286263:exon25:c.A3550C:p.T1184P,Ralgapa1:NM_001368814:exon25:c.A4918C:p.T1640P"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.680962861	2	0.7646358	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	59174146	12A2p6	cell line	sgMsh2	59174146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	110	0	0	NA	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001165253:exon17:c.G1414T:p.D472Y,Mia2:NM_001165254:exon17:c.G1381T:p.D461Y,Mia2:NM_001374760:exon19:c.G1513T:p.D505Y,Mia2:NM_146034:exon19:c.G1480T:p.D494Y,Mia2:NM_001329047:exon24:c.G3289T:p.D1097Y,Mia2:NM_001368839:exon24:c.G3286T:p.D1096Y"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.685659157	2	0.8607453	AGA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr12	61840213	12A2p6	cell line	sgMsh2	61840213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	209	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.G786A:p.T262T,Lrfn5:NM_178714:exon3:c.G786A:p.T262T"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.9469425	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr12	61843778	12A2p6	cell line	sgMsh2	61843778	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	102	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1852G:p.S618A,Lrfn5:NM_178714:exon4:c.T1852G:p.S618A"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.375703647	3	0.9281577	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	64471562	12A2p6	cell line	sgMsh2	64471562	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	199	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.G3129T:p.K1043N	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.915777641	1	0.9999832	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	64473084	12A2p6	cell line	sgMsh2	64473084	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.262	60	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.C1607T:p.A536V	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9934412	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	64957332	12A2p6	cell line	sgMsh2	64957332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	268	0	0	NA	exonic	Klhl28	nonsynonymous SNV	Klhl28:NM_025707:exon2:c.A406G:p.N136D	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.544770289	2	0.9999034	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	64967733	12A2p6	cell line	sgMsh2	64967733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	278	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.T1757C:p.V586A,Togaram1:NM_177805:exon1:c.T1757C:p.V586A"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.9776663	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	65016552	12A2p6	cell line	sgMsh2	65016552	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	209	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_177805:exon17:c.T4640G:p.I1547S,Togaram1:NM_001364325:exon18:c.T4790G:p.I1597S"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.850029502	1	0.9992608	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	297	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.615214723	2	0.9999924	CAA	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr12	65043292	12A2p6	cell line	sgMsh2	65043292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	331	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.T379C:p.Y127H	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.746710999	1	0.6346061	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	117	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.995614666	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr12	65106560	12A2p6	cell line	sgMsh2	65106560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	141	0	0	NA	exonic	Fancm	synonymous SNV	"Fancm:NM_001364447:exon14:c.T1566C:p.A522A,Fancm:NM_178912:exon14:c.T3789C:p.A1263A"	12qC1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.558859176	2	0.997021	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	165	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.286474031	3	0.9999589	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	157	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	2	1	1	0.9999974	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Vardict	2	0.103	345	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.483718446	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr12	69590736	12A2p6	cell line	sgMsh2	69590736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	130	0	0	NA	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon20:c.A3296G:p.D1099G	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.727925817	2	6.24E-07	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	69826325	12A2p6	cell line	sgMsh2	69826325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	172	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon18:c.A1406G:p.Q469R	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.507199924	2	0.9768151	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	69969116	12A2p6	cell line	sgMsh2	69969116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	185	0	0	NA	exonic	Sav1	nonsynonymous SNV	Sav1:NM_022028:exon4:c.G907A:p.A303T	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.727925817	2	0.6711596	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	70197745	12A2p6	cell line	sgMsh2	70197745	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	131	0	0	NA	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon13:c.A1535T:p.Y512F	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.648088792	2	0.9769961	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	70464456	12A2p6	cell line	sgMsh2	70464456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	657	0	0	NA	exonic	Tmx1	synonymous SNV	Tmx1:NM_028339:exon7:c.A648G:p.Q216Q	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	2	1.19E-09	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	70956648	12A2p6	cell line	sgMsh2	70956648	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	186	0	0	NA	exonic	Actr10	nonsynonymous SNV	Actr10:NM_019785:exon10:c.A763C:p.I255L	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.821851729	1	0.9917023	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	194	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.868814685	1	0.9996109	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr12	72101985	12A2p6	cell line	sgMsh2	72101985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	128	0	0	NA	exonic	Ccdc175	nonsynonymous SNV	Ccdc175:NM_028687:exon20:c.A2398G:p.R800G	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.601125836	2	0.995586	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	72470286	12A2p6	cell line	sgMsh2	72470286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	244	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon15:c.T1808C:p.V603A,Lrrc9:NM_001142729:exon15:c.T1811C:p.V604A,Lrrc9:NM_030070:exon15:c.T1811C:p.V604A"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.774888773	1	0.9318367	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	72664743	12A2p6	cell line	sgMsh2	72664743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	16	0	0	NA	exonic	Dhrs7	synonymous SNV	Dhrs7:NM_025522:exon1:c.T19C:p.L7L	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	2	1	1	0.8084062	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	73109092	12A2p6	cell line	sgMsh2	73109092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	271	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.A1100C:p.N367T,Six4:NM_001362272:exon3:c.A1076C:p.N359T"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.309955509	3	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	73168143	12A2p6	cell line	sgMsh2	73168143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	99	0	0	NA	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon2:c.T233C:p.V78A	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.878207276	1	0.9876272	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	73941714	12A2p6	cell line	sgMsh2	73941714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	362	0	0	NA	exonic	Hif1a	synonymous SNV	"Hif1a:NM_001313919:exon11:c.T1563C:p.T521T,Hif1a:NM_010431:exon11:c.T1560C:p.T520T"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.441451786	3	0.8620061	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr12	75716391	12A2p6	cell line	sgMsh2	75716391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	352	0	0	NA	exonic	Sgpp1	synonymous SNV	Sgpp1:NM_030750:exon3:c.T1015C:p.L339L	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.474325855	2	0.9305197	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	451	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.413274012	3	0.9992784	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	75966413	12A2p6	cell line	sgMsh2	75966413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	97	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon48:c.G8377A:p.G2793S	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.732622113	2	0.5380437	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	64	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.704444339	2	0.000910259	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	76145477	12A2p6	cell line	sgMsh2	76145477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	139	0	0	NA	exonic	Esr2	nonsynonymous SNV	"Esr2:NM_010157:exon5:c.A776G:p.H259R,Esr2:NM_207707:exon5:c.A776G:p.H259R"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.450844377	2	0.5504127	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	76270450	12A2p6	cell line	sgMsh2	76270450	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	218	0	0	NA	exonic	Mthfd1	nonsynonymous SNV	Mthfd1:NM_138745:exon2:c.C74G:p.T25S	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.676266565	2	0.9880672	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	76583325	12A2p6	cell line	sgMsh2	76583325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	51	0	0	NA	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon36:c.A6890G:p.K2297R	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9865062	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	78680393	12A2p6	cell line	sgMsh2	78680393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	132	0	0	NA	exonic	Gphn	nonsynonymous SNV	"Gphn:NM_145965:exon21:c.G2087T:p.R696M,Gphn:NM_172952:exon22:c.G2078T:p.R693M"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.450844377	2	0.5562614	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	78866537	12A2p6	cell line	sgMsh2	78866537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	141	0	0	NA	exonic	Eif2s1	nonsynonymous SNV	Eif2s1:NM_026114:exon2:c.T11C:p.L4P	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.90638505	1	0.9994009	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	169	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.248903666	3	0.9999971	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	80174498	12A2p6	cell line	sgMsh2	80174498	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	411	0	0	NA	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon15:c.A1780C:p.T594P,Actn1:NM_001379075:exon15:c.A1780C:p.T594P,Actn1:NM_001379076:exon15:c.A1585C:p.T529P,Actn1:NM_134156:exon15:c.A1780C:p.T594P"	12qC3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.9999816	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	349	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.27708144	3	1.07E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	81379199	12A2p6	cell line	sgMsh2	81379199	T	C	SNV	Mutect2;Vardict	2	0.052	372	0	0	NA	exonic	Gm4787	nonsynonymous SNV	Gm4787:NM_001038995:exon1:c.A184G:p.M62V	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.244207371	3	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	81724281	12A2p6	cell line	sgMsh2	81724281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	98	0	0	NA	exonic	Map3k9	synonymous SNV	Map3k9:NM_001174107:exon10:c.A2532G:p.Q844Q	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.544770289	2	0.9757931	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr12	81772870	12A2p6	cell line	sgMsh2	81772870	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	151	0	0	NA	exonic	Map3k9	synonymous SNV	"Map3k9:NM_001174107:exon2:c.C609T:p.C203C,Map3k9:NM_177395:exon2:c.C609T:p.C203C"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	1	0.9999803	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr12	81981013	12A2p6	cell line	sgMsh2	81981013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	59	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon26:c.T4850C:p.L1617P	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9928923	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	83539395	12A2p6	cell line	sgMsh2	83539395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	107	0	0	NA	exonic	Dcaf4	nonsynonymous SNV	"Dcaf4:NM_001165256:exon11:c.A1135G:p.T379A,Dcaf4:NM_030246:exon12:c.A1096G:p.T366A"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.742014704	1	0.5327869	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	83555228	12A2p6	cell line	sgMsh2	83555228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	289	0	0	NA	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon4:c.T209C:p.V70A,Zfyve1:NM_001359166:exon7:c.T1454C:p.V485A,Zfyve1:NM_183154:exon7:c.T1454C:p.V485A,Zfyve1:NM_001359167:exon8:c.T1454C:p.V485A"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.417970308	3	0.9798165	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	83784299	12A2p6	cell line	sgMsh2	83784299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	70	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon23:c.A3161G:p.D1054G,Papln:NM_001205343:exon24:c.A3227G:p.D1076G"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.624607314	2	0.9146445	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	83786790	12A2p6	cell line	sgMsh2	83786790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	150	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon25:c.T3413C:p.L1138P,Papln:NM_001205343:exon26:c.T3479C:p.L1160P"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.67157027	2	0.9611859	CTG	nonsynonymous	GCCT	13	GCCTGCCTCCTGC	NA
M6_p20	chr12	83952501	12A2p6	cell line	sgMsh2	83952501	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	191	0	0	NA	exonic	Riox1	stoploss	Riox1:NM_023633:exon1:c.T1810A:p.X604K	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.760799886	1	0.7747674	TTA	nonsynonymous	AGTT	8	AGTTAGTT	NA
M6_p20	chr12	84053467	12A2p6	cell line	sgMsh2	84053467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	75	0	0	NA	exonic	Acot3	nonsynonymous SNV	Acot3:NM_134246:exon2:c.A16G:p.T6A	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.920473936	1	0.9873345	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	84335083	12A2p6	cell line	sgMsh2	84335083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	94	0	0	NA	exonic	Zfp410	nonsynonymous SNV	Zfp410:NM_001252583:exon9:c.C1019T:p.P340L	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.850029502	1	0.9655365	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	85042138	12A2p6	cell line	sgMsh2	85042138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	278	0	0	NA	exonic	Ylpm1	synonymous SNV	"Ylpm1:NM_001347421:exon8:c.T2916C:p.R972R,Ylpm1:NM_178363:exon9:c.T5034C:p.R1678R"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.460236968	2	0.6716463	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr12	85139623	12A2p6	cell line	sgMsh2	85139623	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	58	0	0	NA	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364317:exon6:c.A662T:p.Y221F,Rps6kl1:NM_001364315:exon7:c.A710T:p.Y237F,Rps6kl1:NM_001364316:exon7:c.A680T:p.Y227F,Rps6kl1:NM_146244:exon7:c.A710T:p.Y237F"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	1	0.9861255	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	193	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.619911018	2	0.9993313	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	86680169	12A2p6	cell line	sgMsh2	86680169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	110	0	0	NA	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon1:c.A182T:p.E61V	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.6120129	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	86720492	12A2p6	cell line	sgMsh2	86720492	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	71	0	0	NA	exonic	Angel1	nonsynonymous SNV	Angel1:NM_144524:exon5:c.T1109A:p.L370Q	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.826548024	1	0.8841621	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	87077206	12A2p6	cell line	sgMsh2	87077206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	651	0	0	NA	exonic	Tmem63c	nonsynonymous SNV	"Tmem63c:NM_001361704:exon17:c.T1457C:p.L486P,Tmem63c:NM_001361705:exon17:c.T1457C:p.L486P,Tmem63c:NM_172583:exon18:c.T1457C:p.L486P"	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.666873974	2	0.9999998	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	83	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.572948062	2	0.9720886	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr12	87350283	12A2p6	cell line	sgMsh2	87350283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	236	0	0	NA	exonic	Sptlc2	nonsynonymous SNV	Sptlc2:NM_011479:exon5:c.A728G:p.N243S	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	0.9999828	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.115	68	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.540073993	2	0.9253452	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	88181783	12A2p6	cell line	sgMsh2	88181783	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	26	0	0	NA	exonic	Pramel51	frameshift deletion	Pramel51:NM_001105254:exon1:c.62delT:p.F21Sfs*6	12qD2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr12	88795285	12A2p6	cell line	sgMsh2	88795285	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.137	41	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.C101T:p.P34L	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.643392496	2	0.737618	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	88795504	12A2p6	cell line	sgMsh2	88795504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	263	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.G320A:p.S107N	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.535377698	2	0.9997128	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	89348299	12A2p6	cell line	sgMsh2	89348299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	321	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon7:c.A979G:p.M327V,Nrxn3:NM_001198587:exon8:c.A2098G:p.M700V"	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.718533226	2	0.9095461	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	91537344	12A2p6	cell line	sgMsh2	91537344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	76	0	0	NA	exonic	Tshr	nonsynonymous SNV	Tshr:NM_011648:exon10:c.A1055G:p.Y352C	12qD3	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.455540673	2	0.000767944	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	98435226	12A2p6	cell line	sgMsh2	98435226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	108	0	0	NA	exonic	Kcnk10	nonsynonymous SNV	"Kcnk10:NM_001316664:exon7:c.T1147C:p.F383L,Kcnk10:NM_001316665:exon7:c.T1198C:p.F400L,Kcnk10:NM_029911:exon7:c.T1189C:p.F397L"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9998644	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	148	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.685659157	2	0.9246879	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr12	98783698	12A2p6	cell line	sgMsh2	98783698	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	167	0	0	NA	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001160108:exon3:c.T586A:p.C196S,Zc3h14:NM_001364405:exon9:c.T931A:p.C311S,Zc3h14:NM_001160107:exon10:c.T1396A:p.C466S,Zc3h14:NM_001364404:exon10:c.T1006A:p.C336S,Zc3h14:NM_001008506:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364402:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364401:exon12:c.T1789A:p.C597S,Zc3h14:NM_001364403:exon12:c.T1399A:p.C467S,Zc3h14:NM_001364400:exon13:c.T1864A:p.C622S,Zc3h14:NM_029334:exon13:c.T1864A:p.C622S"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.798370251	1	0.9559204	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	100123103	12A2p6	cell line	sgMsh2	100123103	A	G	SNV	Mutect2;Vardict	2	0.124	32	0	0	NA	exonic	Psmc1	nonsynonymous SNV	Psmc1:NM_008947:exon10:c.A1231G:p.M411V	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	0.08638972	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	104	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.648088792	2	0.9496856	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	101058739	12A2p6	cell line	sgMsh2	101058739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	139	0	0	NA	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A500G:p.E167G,Ppp4r3a:NM_211355:exon4:c.A500G:p.E167G"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.469629559	2	0.7659534	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Vardict	2	0.083	340	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.389792534	NA	NA	CCA	frameshift	NA	NA	NA	1
M6_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	152	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999961	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr12	102785347	12A2p6	cell line	sgMsh2	102785347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	181	0	0	NA	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon11:c.C3157T:p.R1053W,Btbd7:NM_172806:exon12:c.C3157T:p.R1053W"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.8172038	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	103088490	12A2p6	cell line	sgMsh2	103088490	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	230	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon21:c.C2845A:p.L949I	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.695051748	2	0.9647021	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	103169710	12A2p6	cell line	sgMsh2	103169710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	188	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon45:c.A7229G:p.D2410G	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.638696201	2	0.9975513	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	103173515	12A2p6	cell line	sgMsh2	103173515	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	294	0	0	NA	exonic	Unc79	synonymous SNV	Unc79:NM_001081017:exon47:c.A7533G:p.S2511S	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.507199924	2	0.9973153	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr12	103330500	12A2p6	cell line	sgMsh2	103330500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	207	0	0	NA	exonic	Asb2	synonymous SNV	"Asb2:NM_001374764:exon5:c.G753A:p.T251T,Asb2:NM_023049:exon7:c.G897A:p.T299T"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.9955476	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr12	103424065	12A2p6	cell line	sgMsh2	103424065	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	85	0	0	NA	exonic	Ddx24	nonsynonymous SNV	"Ddx24:NM_001159502:exon2:c.A666T:p.K222N,Ddx24:NM_001364162:exon2:c.A528T:p.K176N,Ddx24:NM_001364163:exon2:c.A528T:p.K176N,Ddx24:NM_020494:exon2:c.A528T:p.K176N"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.779585069	1	0.7583687	ATT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr12	103950807	12A2p6	cell line	sgMsh2	103950807	A	G	SNV	Mutect2;Vardict	2	0.058	290	0	0	NA	exonic	Serpina1e	nonsynonymous SNV	Serpina1e:NM_009247:exon2:c.T602C:p.V201A	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.272385144	3	3.52E-09	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	104103241	12A2p6	cell line	sgMsh2	104103241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	171	0	0	NA	exonic	Serpina5	synonymous SNV	Serpina5:NM_172953:exon3:c.A711G:p.E237E	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.699748043	2	9.03E-08	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	104696697	12A2p6	cell line	sgMsh2	104696697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	140	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.G4624A:p.D1542N	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.685659157	2	0.9139906	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	104729211	12A2p6	cell line	sgMsh2	104729211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	261	0	0	NA	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon5:c.T460C:p.L154L	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	0.9999948	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	104782075	12A2p6	cell line	sgMsh2	104782075	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	106	0	0	NA	exonic	Clmn	synonymous SNV	"Clmn:NM_001040682:exon9:c.G1212A:p.E404E,Clmn:NM_053155:exon9:c.G1212A:p.E404E"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.911081345	1	0.9969062	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr12	105164467	12A2p6	cell line	sgMsh2	105164467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	226	0	0	NA	exonic	Tcl1b1	synonymous SNV	Tcl1b1:NM_013773:exon2:c.T208C:p.L70L	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.615214723	2	0.9998667	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr12	105809376	12A2p6	cell line	sgMsh2	105809376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	383	0	0	NA	exonic	Papola	nonsynonymous SNV	"Papola:NM_001347440:exon8:c.T641C:p.V214A,Papola:NM_011112:exon8:c.T641C:p.V214A"	12qE	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.9661721	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	108199358	12A2p6	cell line	sgMsh2	108199358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	253	0	0	NA	exonic	Ccnk	synonymous SNV	Ccnk:NM_009832:exon11:c.A1098G:p.P366P	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.493111037	2	0.9790358	CAT	synonymous	CACC	8	CACCCACC	NA
M6_p20	chr12	108357507	12A2p6	cell line	sgMsh2	108357507	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	85	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon11:c.A1001C:p.E334A	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.887599867	1	0.9826231	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	92	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	2	0.9511703	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	108806507	12A2p6	cell line	sgMsh2	108806507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	145	0	0	NA	exonic	Yy1	synonymous SNV	Yy1:NM_009537:exon2:c.A708T:p.T236T	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.915777641	1	0.9996823	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	109027407	12A2p6	cell line	sgMsh2	109027407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	44	0	0	NA	exonic	Wdr25	synonymous SNV	Wdr25:NM_177602:exon7:c.T1548C:p.P516P	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.803066546	1	0.730059	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr12	110639846	12A2p6	cell line	sgMsh2	110639846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	109	0	0	NA	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon36:c.T7349C:p.L2450P	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.67157027	2	0.09217121	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	110855054	12A2p6	cell line	sgMsh2	110855054	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	23	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.A301G:p.T101A,Zfp839:NM_028365:exon2:c.A301G:p.T101A"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.6065963	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	110855303	12A2p6	cell line	sgMsh2	110855303	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	45	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.G550A:p.A184T,Zfp839:NM_028365:exon2:c.G550A:p.A184T"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.5597405	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	110926319	12A2p6	cell line	sgMsh2	110926319	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	196	0	0	NA	exonic	Tecpr2	nonsynonymous SNV	"Tecpr2:NM_001289510:exon6:c.T794G:p.V265G,Tecpr2:NM_001081057:exon7:c.T794G:p.V265G"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.8368849	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	111242465	12A2p6	cell line	sgMsh2	111242466	AG	-	Deletion	Strelka2;Vardict	2	0.2036	334	0	0	NA	exonic	Traf3	frameshift deletion	"Traf3:NM_001286122:exon4:c.317_318del:p.E108Dfs*10,Traf3:NM_001364364:exon5:c.317_318del:p.E108Dfs*10,Traf3:NM_011632:exon5:c.317_318del:p.E108Dfs*10"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.956165783	NA	NA	AAG	frameshift	AG	9	AGAGAGAGA	-2
M6_p20	chr12	111669725	12A2p6	cell line	sgMsh2	111669725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	80	0	0	NA	exonic	Ckb	synonymous SNV	Ckb:NM_021273:exon8:c.T984C:p.A328A	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.976829483	1	0.9976602	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr12	111711096	12A2p6	cell line	sgMsh2	111711096	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	162	0	0	NA	exonic	Bag5	nonsynonymous SNV	"Bag5:NM_001324480:exon2:c.T292G:p.F98V,Bag5:NM_001324481:exon2:c.T292G:p.F98V,Bag5:NM_001324482:exon2:c.T292G:p.F98V,Bag5:NM_027404:exon2:c.T292G:p.F98V"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.803066546	1	0.9619135	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	78	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.5916691	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	112852194	12A2p6	cell line	sgMsh2	112852194	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	178	0	0	NA	exonic	Gpr132	nonsynonymous SNV	Gpr132:NM_019925:exon3:c.G1011T:p.K337N	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.295866622	3	0.999967	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	112922038	12A2p6	cell line	sgMsh2	112922038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	97	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon3:c.T437C:p.V146A	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.807762842	1	0.894994	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	113068082	12A2p6	cell line	sgMsh2	113068082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	99	0	0	NA	exonic	Pacs2	nonsynonymous SNV	"Pacs2:NM_001291445:exon18:c.A1907G:p.D636G,Pacs2:NM_001081170:exon19:c.A1997G:p.D666G,Pacs2:NM_001291444:exon19:c.A2003G:p.D668G"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.6050659	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	113130589	12A2p6	cell line	sgMsh2	113130589	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	53	0	0	NA	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001364622:exon11:c.A1022C:p.N341T,Mta1:NM_001364623:exon11:c.A1022C:p.N341T,Mta1:NM_054081:exon11:c.A1022C:p.N341T,Mta1:NM_001346696:exon12:c.A1073C:p.N358T,Mta1:NM_001364620:exon12:c.A1073C:p.N358T,Mta1:NM_001364621:exon12:c.A1073C:p.N358T"	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.605822132	2	0.8717525	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	113490367	12A2p6	cell line	sgMsh2	113490367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	410	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T803C:p.V268A	12qF1	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.633999905	2	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	116059469	12A2p6	cell line	sgMsh2	116059469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	214	0	0	NA	exonic	Zfp386	nonsynonymous SNV	"Zfp386:NM_001004066:exon3:c.A806T:p.E269V,Zfp386:NM_019565:exon3:c.A701T:p.E234V"	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.732622113	2	0.6305373	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	126	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.366311056	3	0.9773492	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M6_p20	chr12	116841323	12A2p6	cell line	sgMsh2	116841323	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	340	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon5:c.T457A:p.Y153N	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.967436892	1	1.03E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	117233326	12A2p6	cell line	sgMsh2	117233326	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	233	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon17:c.G2419T:p.G807C	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.742014704	1	0.5231385	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	117876971	12A2p6	cell line	sgMsh2	117876971	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	224	0	0	NA	exonic	Cdca7l	synonymous SNV	Cdca7l:NM_146040:exon9:c.C1227A:p.R409R	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.403881421	3	0.9828168	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	470	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	1.03E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	118126826	12A2p6	cell line	sgMsh2	118126826	C	T	SNV	Mutect2;Vardict	2	0.052	217	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon17:c.G3299A:p.S1100N	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.244207371	3	4.47E-08	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr12	118130961	12A2p6	cell line	sgMsh2	118130961	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	134	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon14:c.T2371G:p.F791V	12qF2	chr12-3873436-119465464	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	0.9983677	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	3577004	12A2p6	cell line	sgMsh2	3577004	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	242	0	0	NA	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon14:c.G2615A:p.S872N,Tasor2:NM_134063:exon14:c.G2945A:p.S982N"	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9791035	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	3588492	12A2p6	cell line	sgMsh2	3588492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	81	0	0	NA	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon11:c.T1238C:p.L413P,Tasor2:NM_134063:exon11:c.T1238C:p.L413P"	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8601366	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	3886115	12A2p6	cell line	sgMsh2	3886115	T	-	Deletion	Mutect2;Vardict	2	0.133	66	0	0	NA	exonic	Net1	frameshift deletion	"Net1:NM_001047159:exon8:c.968delA:p.K323Rfs*16,Net1:NM_019671:exon10:c.1130delA:p.K377Rfs*16"	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.624607314	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr13	3907818	12A2p6	cell line	sgMsh2	3907818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	125	0	0	NA	exonic	Net1	synonymous SNV	Net1:NM_019671:exon3:c.C234T:p.S78S	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9212469	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr13	8991761	12A2p6	cell line	sgMsh2	8991761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	147	0	0	NA	exonic	Gtpbp4	synonymous SNV	Gtpbp4:NM_027000:exon4:c.T414C:p.C138C	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9981423	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr13	9575459	12A2p6	cell line	sgMsh2	9575459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	189	0	0	NA	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon16:c.A1854G:p.I618M	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9989706	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	9690368	12A2p6	cell line	sgMsh2	9690368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	280	0	0	NA	exonic	Zmynd11	synonymous SNV	"Zmynd11:NM_001347479:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347480:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347470:exon12:c.T1305C:p.S435S,Zmynd11:NM_001347471:exon12:c.T1305C:p.S435S"	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9993741	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr13	11587341	12A2p6	cell line	sgMsh2	11587341	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	119	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon94:c.A13654G:p.R4552G	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.6178369	CTG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr13	11595649	12A2p6	cell line	sgMsh2	11595649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	190	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon90:c.T12290C:p.V4097A	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9988224	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	11738141	12A2p6	cell line	sgMsh2	11738141	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	98	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon37:c.5293delT:p.S1765Pfs*5	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.756103591	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr13	12212733	12A2p6	cell line	sgMsh2	12212733	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	160	0	0	NA	exonic	Mtr	nonsynonymous SNV	Mtr:NM_001081128:exon21:c.A2206T:p.I736F	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999975	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	12429781	12A2p6	cell line	sgMsh2	12429781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	169	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon33:c.T4611C:p.G1537G	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9459161	GTG	synonymous	GTG	8	GTGGTGGT	NA
M6_p20	chr13	13730347	12A2p6	cell line	sgMsh2	13730347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	210	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon42:c.A9608G:p.K3203R	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9649952	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	13759442	12A2p6	cell line	sgMsh2	13759442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	193	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon48:c.T10724C:p.I3575T	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9998707	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	14014753	12A2p6	cell line	sgMsh2	14014753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	178	0	0	NA	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon5:c.A442T:p.I148F	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9942636	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	16027074	12A2p6	cell line	sgMsh2	16027074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	151	0	0	NA	exonic	Inhba	nonsynonymous SNV	Inhba:NM_008380:exon5:c.A1220C:p.N407T	13qA1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9958375	AAC	nonsynonymous	CAT	8	CATCATCA	NA
M6_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	229	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	19630076	12A2p6	cell line	sgMsh2	19630076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	148	0	0	NA	exonic	Sfrp4	nonsynonymous SNV	Sfrp4:NM_016687:exon5:c.C802T:p.L268F	13qA2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.765496182	1	0.7708558	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	20979491	12A2p6	cell line	sgMsh2	20979491	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	161	0	0	NA	exonic	Aoah	frameshift deletion	Aoah:NM_012054:exon13:c.963delT:p.L322fs*0	13qA2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr13	21013142	12A2p6	cell line	sgMsh2	21013142	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	306	0	0	NA	exonic	Aoah	nonsynonymous SNV	Aoah:NM_012054:exon20:c.A1550G:p.Q517R	13qA2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	21364017	12A2p6	cell line	sgMsh2	21364017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	67	0	0	NA	exonic	Zscan12	nonsynonymous SNV	Zscan12:NM_016684:exon2:c.A368G:p.D123G	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5602942	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	330	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.9999997	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	214	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.272385144	3	0.9999995	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	22293996	12A2p6	cell line	sgMsh2	22293996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	241	0	0	NA	exonic	Vmn1r196	synonymous SNV	Vmn1r196:NM_001167541:exon1:c.T804C:p.T268T	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9963617	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr13	23163522	12A2p6	cell line	sgMsh2	23163522	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	168	0	0	NA	exonic	Vmn1r219	nonsynonymous SNV	Vmn1r219:NM_134238:exon1:c.T880G:p.C294G	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9996852	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	313	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	2	1	1	1.01E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23465179	12A2p6	cell line	sgMsh2	23465179	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	93	0	0	NA	exonic	Btn1a1	nonsynonymous SNV	Btn1a1:NM_013483:exon2:c.T2C:p.M1T	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.7544128	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23478418	12A2p6	cell line	sgMsh2	23478418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	240	0	0	NA	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon7:c.T1334C:p.I445T,Btn2a2:NM_001289615:exon8:c.T1361C:p.I454T,Btn2a2:NM_175938:exon8:c.T1361C:p.I454T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.7259877	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23543231	12A2p6	cell line	sgMsh2	23543231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	280	0	0	NA	exonic	H2bc9	nonsynonymous SNV	H2bc9:NM_178197:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.662177679	2	0.9990532	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M6_p20	chr13	23574069	12A2p6	cell line	sgMsh2	23574069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	237	0	0	NA	exonic	H2bc7	nonsynonymous SNV	H2bc7:NM_178195:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9995915	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M6_p20	chr13	23575860	12A2p6	cell line	sgMsh2	23575860	A	G	SNV	Mutect2;Vardict	2	0.122	58	0	0	NA	exonic	H3c4	nonsynonymous SNV	H3c4:NM_178204:exon1:c.A59G:p.Q20R	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9124675	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23752398	12A2p6	cell line	sgMsh2	23752398	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.257	118	0	0	NA	exonic	H3c2	nonsynonymous SNV	H3c2:NM_178203:exon1:c.A19T:p.T7S	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999396	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	23785909	12A2p6	cell line	sgMsh2	23785909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	193	0	0	NA	exonic	Trim38	synonymous SNV	Trim38:NM_001029935:exon2:c.T450C:p.R150R	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.9215783	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	90	0	0	NA	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9239252	GCA	synonymous	NA	NA	NA	NA
M6_p20	chr13	27245800	12A2p6	cell line	sgMsh2	27245800	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	187	0	0	NA	exonic	Prl3b1	nonsynonymous SNV	Prl3b1:NM_008865:exon3:c.A220C:p.T74P	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	27385231	12A2p6	cell line	sgMsh2	27385231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	273	0	0	NA	exonic	Prl2b1	nonsynonymous SNV	Prl2b1:NM_025532:exon4:c.A383G:p.H128R	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.7084407	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	27576975	12A2p6	cell line	sgMsh2	27576975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	214	0	0	NA	exonic	Prl8a1	synonymous SNV	Prl8a1:NM_028477:exon4:c.G273A:p.Q91Q	13qA3.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.929866528	1	0.9999971	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr13	32127986	12A2p6	cell line	sgMsh2	32127986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	108	0	0	NA	exonic	Gmds	synonymous SNV	Gmds:NM_146041:exon5:c.C459A:p.A153A	13qA3.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9813744	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;MuSe;Vardict	3	0.09	354	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.9863584	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	38944637	12A2p6	cell line	sgMsh2	38944637	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	229	0	0	NA	exonic	Slc35b3	nonsynonymous SNV	"Slc35b3:NM_001170430:exon4:c.A341G:p.Y114C,Slc35b3:NM_001170431:exon4:c.A341G:p.Y114C,Slc35b3:NM_134060:exon4:c.A341G:p.Y114C"	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.272385144	3	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	40094750	12A2p6	cell line	sgMsh2	40094750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	57	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon14:c.T1907C:p.I636T	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9916538	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	40918635	12A2p6	cell line	sgMsh2	40918635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	199	0	0	NA	exonic	Gcnt2	synonymous SNV	Gcnt2:NM_133219:exon1:c.A753G:p.P251P	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.92111	CAC	synonymous	CTCCAC	12	CTCCACCTCCAC	NA
M6_p20	chr13	41316168	12A2p6	cell line	sgMsh2	41316168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	174	0	0	NA	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1508T:p.H503L,Nedd9:NM_001111324:exon6:c.A1508T:p.H503L"	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9892404	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	41316172	12A2p6	cell line	sgMsh2	41316172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	174	0	0	NA	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1504G:p.S502G,Nedd9:NM_001111324:exon6:c.A1504G:p.S502G"	13qA3.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9892404	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	195	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9999084	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	46830848	12A2p6	cell line	sgMsh2	46830848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	78	0	0	NA	exonic	Kif13a	nonsynonymous SNV	Kif13a:NM_010617:exon6:c.T440C:p.V147A	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9203693	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	49461637	12A2p6	cell line	sgMsh2	49461637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	218	0	0	NA	exonic	Ippk	nonsynonymous SNV	"Ippk:NM_001276399:exon13:c.T1495C:p.Y499H,Ippk:NM_199056:exon13:c.T1348C:p.Y450H"	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9998496	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	49641245	12A2p6	cell line	sgMsh2	49641245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	32	0	0	NA	exonic	Cenpp	synonymous SNV	Cenpp:NM_025495:exon4:c.T445C:p.L149L	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	2	1	1	0.9401058	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr13	49722263	12A2p6	cell line	sgMsh2	49722263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	94	0	0	NA	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon23:c.G2425A:p.V809I	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	9.61E-05	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	50417950	12A2p6	cell line	sgMsh2	50417950	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	53	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon1:c.A53T:p.E18V	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9884997	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	201	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.995153	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	51	0	0	NA	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.4998971	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr13	53118802	12A2p6	cell line	sgMsh2	53118802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	exonic	Ror2	nonsynonymous SNV	Ror2:NM_013846:exon6:c.C826T:p.L276F	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.994416	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	54053932	12A2p6	cell line	sgMsh2	54053932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	117	0	0	NA	exonic	Drd1	nonsynonymous SNV	"Drd1:NM_001291801:exon2:c.T262C:p.F88L,Drd1:NM_010076:exon2:c.T262C:p.F88L"	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999345	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	54214497	12A2p6	cell line	sgMsh2	54214497	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	196	0	0	NA	exonic	Hrh2	nonsynonymous SNV	Hrh2:NM_001010973:exon2:c.C491T:p.T164I	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.8368849	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	54552616	12A2p6	cell line	sgMsh2	54552616	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	200	0	0	NA	exonic	4833439L19Rik	nonsynonymous SNV	"4833439L19Rik:NM_001252648:exon5:c.T287G:p.F96C,4833439L19Rik:NM_001252647:exon6:c.T593G:p.F198C,4833439L19Rik:NM_001252646:exon7:c.T851G:p.F284C,4833439L19Rik:NM_001252645:exon8:c.T851G:p.F284C,4833439L19Rik:NM_133797:exon9:c.T908G:p.F303C"	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9987872	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	164	0	0	NA	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.9196833	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr13	55247836	12A2p6	cell line	sgMsh2	55247836	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	28	0	0	NA	exonic	Nsd1	frameshift deletion	Nsd1:NM_008739:exon5:c.3558delT:p.A1187Lfs*18	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
M6_p20	chr13	55670331	12A2p6	cell line	sgMsh2	55670331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	134	0	0	NA	exonic	Ddx46	nonsynonymous SNV	Ddx46:NM_001282055:exon18:c.A2414G:p.D805G	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999835	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	56527283	12A2p6	cell line	sgMsh2	56527283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	159	0	0	NA	exonic;splicing	Fbxl21;Fbxl21	nonsynonymous SNV	Fbxl21:NM_001359807:exon3:c.T446C:p.V149A	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9984445	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	57429422	12A2p6	cell line	sgMsh2	57429422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	58	0	0	NA	exonic	Spock1	nonsynonymous SNV	"Spock1:NM_001166463:exon11:c.T1193C:p.L398P,Spock1:NM_001166466:exon12:c.T1199C:p.L400P,Spock1:NM_009262:exon12:c.T1202C:p.L401P"	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	59054441	12A2p6	cell line	sgMsh2	59054441	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	129	0	0	NA	exonic	Ntrk2	nonsynonymous SNV	"Ntrk2:NM_001025074:exon15:c.A1862G:p.H621R,Ntrk2:NM_001282961:exon15:c.A1862G:p.H621R"	13qB1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9973314	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	59718084	12A2p6	cell line	sgMsh2	59718084	A	G	SNV	Mutect2;MuSe;Vardict	3	0.129	102	0	0	NA	exonic	Spata31d1b	synonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3045G:p.P1015P	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9840052	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr13	59718988	12A2p6	cell line	sgMsh2	59718988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	35	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.T3949C:p.C1317R	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9524188	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	60801380	12A2p6	cell line	sgMsh2	60801380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	205	0	0	NA	exonic	Ctsll3	synonymous SNV	Ctsll3:NM_027344:exon2:c.A36G:p.L12L	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9442677	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	237	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.9429411	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	60935412	12A2p6	cell line	sgMsh2	60935412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	171	0	0	NA	exonic	Ctla2a	nonsynonymous SNV	"Ctla2a:NM_001145799:exon4:c.T251C:p.L84P,Ctla2a:NM_007796:exon4:c.T323C:p.L108P"	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.8400506	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	61003080	12A2p6	cell line	sgMsh2	61003080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	87	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T565C:p.Y189H,Ctsj:NM_012007:exon5:c.T562C:p.Y188H"	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9662407	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	61003149	12A2p6	cell line	sgMsh2	61003149	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	116	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.C496A:p.L166I,Ctsj:NM_012007:exon5:c.C493A:p.L165I"	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.6359059	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	61161173	12A2p6	cell line	sgMsh2	61161173	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	207	0	0	NA	exonic	Ctsr	nonsynonymous SNV	Ctsr:NM_020284:exon6:c.C767A:p.S256Y	13qB2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.450844377	3	0.5068942	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	76	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9600653	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr13	64793242	12A2p6	cell line	sgMsh2	64793242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	303	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon6:c.A923G:p.D308G	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9998427	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	65194380	12A2p6	cell line	sgMsh2	65194380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	65	0	0	NA	exonic	Nlrp4f	nonsynonymous SNV	Nlrp4f:NM_175290:exon3:c.A1450G:p.M484V	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.692836	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	65284942	12A2p6	cell line	sgMsh2	65284942	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	183	0	0	NA	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon4:c.A245C:p.N82T	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5935426	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	65296618	12A2p6	cell line	sgMsh2	65296618	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	103	0	0	NA	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon8:c.A1574C:p.E525A	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9922693	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	66956472	12A2p6	cell line	sgMsh2	66956472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	324	0	0	NA	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A407G:p.N136S	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9984263	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	67181907	12A2p6	cell line	sgMsh2	67181907	C	A	SNV	Mutect2;Vardict	2	0.056	281	0	0	NA	exonic	Rsl1	nonsynonymous SNV	Rsl1:NM_001013769:exon4:c.C418A:p.L140I	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.262992553	3	2.76E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	67207979	12A2p6	cell line	sgMsh2	67207979	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	401	0	0	NA	exonic	Zfp455	nonsynonymous SNV	Zfp455:NM_001048204:exon4:c.C1310T:p.T437I	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.9863549	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Vardict	2	0.106	111	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.497807333	NA	NA	TAG	frameshift	NA	NA	NA	-1
M6_p20	chr13	68584051	12A2p6	cell line	sgMsh2	68584051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	76	0	0	NA	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.C490T:p.L164F,Fastkd3:NM_027123:exon2:c.C490T:p.L164F"	13qB3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.7274043	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	70594889	12A2p6	cell line	sgMsh2	70594889	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	781	0	0	NA	exonic	Ice1	synonymous SNV	Ice1:NM_144837:exon17:c.A6351G:p.R2117R	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	1.01E-09	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr13	70602846	12A2p6	cell line	sgMsh2	70602846	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	49	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5120A:p.S1707N	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.09528491	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	70735817	12A2p6	cell line	sgMsh2	70735817	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	97	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon21:c.T3238C:p.Y1080H	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.6375563	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	102	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.963746	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	70779659	12A2p6	cell line	sgMsh2	70779659	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	90	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon10:c.T1460G:p.I487R	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.9631579	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	73927936	12A2p6	cell line	sgMsh2	73927936	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	180	0	0	NA	exonic	Trip13	stopgain	Trip13:NM_027182:exon6:c.A583T:p.K195X	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.7124944	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	36	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.8767594	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr13	74222926	12A2p6	cell line	sgMsh2	74222926	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	119	0	0	NA	exonic	Ahrr	nonsynonymous SNV	"Ahrr:NM_001317351:exon6:c.T290G:p.L97R,Ahrr:NM_009644:exon7:c.T674G:p.L225R"	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9977875	CAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M6_p20	chr13	76202115	12A2p6	cell line	sgMsh2	76202115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	70	0	0	NA	exonic	Fam81b	nonsynonymous SNV	Fam81b:NM_001370926:exon10:c.T1130C:p.L377P	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.09856992	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	76825249	12A2p6	cell line	sgMsh2	76825249	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	164	0	0	NA	exonic	Mctp1	nonsynonymous SNV	"Mctp1:NM_001377108:exon13:c.A1379C:p.Q460P,Mctp1:NM_030174:exon13:c.A2039C:p.Q680P"	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.728675	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	77245342	12A2p6	cell line	sgMsh2	77245342	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.096	85	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon5:c.A1112T:p.Q371L	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5948932	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	77323668	12A2p6	cell line	sgMsh2	77323668	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	216	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon16:c.A3191T:p.N1064I	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999987	AAT	nonsynonymous	AAAGC	12	AAAGCAAAGCAA	NA
M6_p20	chr13	77999635	12A2p6	cell line	sgMsh2	77999635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	247	0	0	NA	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163420:exon7:c.T629C:p.L210S,Fam172a:NM_001163419:exon8:c.T821C:p.L274S,Fam172a:NM_138312:exon9:c.T959C:p.L320S"	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.99998	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	78163545	12A2p6	cell line	sgMsh2	78163545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	15	0	0	NA	exonic	Fam172a	nonsynonymous SNV	"Fam172a:NM_001163420:exon9:c.A814G:p.S272G,Fam172a:NM_001163419:exon10:c.A1006G:p.S336G,Fam172a:NM_138312:exon11:c.A1144G:p.S382G"	13qC1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	2	1	1	0.7948483	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	81413124	12A2p6	cell line	sgMsh2	81413124	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	143	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon76:c.C16270T:p.R5424W	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9916158	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	81440140	12A2p6	cell line	sgMsh2	81440140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	200	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon66:c.A13326G:p.P4442P	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.6866698	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr13	81475027	12A2p6	cell line	sgMsh2	81475027	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	196	0	0	NA	exonic	Adgrv1	stopgain	Adgrv1:NM_054053:exon55:c.C11476T:p.Q3826X	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.7796231	TGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	141	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.9949346	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	81565046	12A2p6	cell line	sgMsh2	81565046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	245	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon16:c.A2961G:p.Q987Q	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9952561	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	135	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.6117335	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	83575685	12A2p6	cell line	sgMsh2	83575685	A	-	Deletion	Mutect2;Vardict	2	0.069	297	0	0	NA	exonic	Mef2c	frameshift deletion	"Mef2c:NM_001347566:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347567:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347568:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347569:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347573:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347574:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347575:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347576:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347577:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347578:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347579:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347580:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347581:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001170537:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347564:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347571:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347572:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_025282:exon3:c.9delA:p.K5Rfs*6"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.324044396	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr13	84294848	12A2p6	cell line	sgMsh2	84294848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	exonic	Tmem161b	nonsynonymous SNV	"Tmem161b:NM_001361908:exon11:c.C1051T:p.L351F,Tmem161b:NM_001361909:exon11:c.C886T:p.L296F,Tmem161b:NM_001361911:exon12:c.C886T:p.L296F,Tmem161b:NM_175187:exon12:c.C1432T:p.L478F"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9735973	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	89704467	12A2p6	cell line	sgMsh2	89704467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	291	0	0	NA	exonic	Vcan	synonymous SNV	"Vcan:NM_001081249:exon7:c.A2373G:p.L791L,Vcan:NM_001134474:exon7:c.A2373G:p.L791L"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	1.41E-08	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	241	0	0	NA	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9579522	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr13	92574979	12A2p6	cell line	sgMsh2	92574979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	116	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A988G:p.R330G	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9978347	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	93092203	12A2p6	cell line	sgMsh2	93092203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	183	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.A6376C:p.R2126R	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9887638	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr13	93175552	12A2p6	cell line	sgMsh2	93175552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	163	0	0	NA	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon6:c.T639C:p.D213D,Tent2:NM_001361537:exon6:c.T639C:p.D213D,Tent2:NM_133905:exon6:c.T639C:p.D213D"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999984	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr13	93175597	12A2p6	cell line	sgMsh2	93175597	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	135	0	0	NA	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_001361537:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_133905:exon6:c.594delT:p.L199Sfs*5"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr13	93346580	12A2p6	cell line	sgMsh2	93346580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	165	0	0	NA	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon3:c.T174C:p.N58N,Homer1:NM_001347598:exon3:c.T174C:p.N58N,Homer1:NM_011982:exon3:c.T174C:p.N58N,Homer1:NM_147176:exon3:c.T174C:p.N58N,Homer1:NM_152134:exon3:c.T222C:p.N74N"	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.8892094	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr13	93459675	12A2p6	cell line	sgMsh2	93459675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	251	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon4:c.T1445C:p.M482T	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.910059	CAT	nonsynonymous	TCA	8	TCATCATC	NA
M6_p20	chr13	93663296	12A2p6	cell line	sgMsh2	93663296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	43	0	0	NA	exonic	Bhmt2	nonsynonymous SNV	Bhmt2:NM_022884:exon6:c.G631T:p.G211W	13qC3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9745283	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	95514004	12A2p6	cell line	sgMsh2	95514004	G	A	SNV	Mutect2;Strelka2	2	0.18	86	0	0	NA	exonic	F2rl1	synonymous SNV	F2rl1:NM_007974:exon2:c.C369T:p.D123D	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	9.84E-08	GGT	synonymous	NA	NA	NA	NA
M6_p20	chr13	96652012	12A2p6	cell line	sgMsh2	96652012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	73	0	0	NA	exonic	Hmgcr	nonsynonymous SNV	"Hmgcr:NM_001360165:exon18:c.T2298G:p.D766E,Hmgcr:NM_001360166:exon18:c.T2328G:p.D776E,Hmgcr:NM_008255:exon18:c.T2298G:p.D766E"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9977	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	97175602	12A2p6	cell line	sgMsh2	97175602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	345	0	0	NA	exonic	Gfm2	synonymous SNV	"Gfm2:NM_001271464:exon20:c.A2124G:p.G708G,Gfm2:NM_001271463:exon21:c.A2205G:p.G735G,Gfm2:NM_001271465:exon21:c.A2199G:p.G733G,Gfm2:NM_177266:exon21:c.A2205G:p.G735G"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.7510674	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	174	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6680628	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr13	99228945	12A2p6	cell line	sgMsh2	99228945	C	-	Deletion	Mutect2;Vardict	2	0.216	68	0	0	NA	exonic	Zfp366	frameshift deletion	Zfp366:NM_001004149:exon2:c.613delC:p.E207Sfs*24	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6_p20	chr13	99425856	12A2p6	cell line	sgMsh2	99425856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	145	0	0	NA	exonic	Map1b	nonsynonymous SNV	Map1b:NM_008634:exon7:c.A7345G:p.T2449A	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7699037	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	99429636	12A2p6	cell line	sgMsh2	99429636	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	135	0	0	NA	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.A6576G:p.K2192K	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.922206	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr13	100023682	12A2p6	cell line	sgMsh2	100023682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	111	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon38:c.A7190G:p.D2397G	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6126422	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	100059643	12A2p6	cell line	sgMsh2	100059643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	140	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon18:c.C3610T:p.P1204S	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.999046	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	100188916	12A2p6	cell line	sgMsh2	100188916	T	G	SNV	Mutect2;Vardict	2	0.036	565	0	0	NA	exonic	Naip2	synonymous SNV	"Naip2:NM_001126182:exon3:c.A483C:p.A161A,Naip2:NM_010872:exon3:c.A483C:p.A161A"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.169066641	3	1	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr13	100242802	12A2p6	cell line	sgMsh2	100242802	G	A	SNV	Mutect2;MuSe;Vardict	3	0.142	381	0	0	NA	exonic	Naip5	synonymous SNV	Naip5:NM_010870:exon4:c.C729T:p.Y243Y	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9998726	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr13	100684293	12A2p6	cell line	sgMsh2	100684293	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	64	0	0	NA	exonic	Ccdc125	nonsynonymous SNV	"Ccdc125:NM_001168386:exon5:c.A443C:p.N148T,Ccdc125:NM_183115:exon6:c.A521C:p.N174T"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9948096	AAT	nonsynonymous	AAAT	8	AAATAAAT	NA
M6_p20	chr13	102736962	12A2p6	cell line	sgMsh2	102736962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	162	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.A5897G:p.K1966R	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.9991441	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	102751407	12A2p6	cell line	sgMsh2	102751407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	221	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon25:c.A3493G:p.I1165V	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9907342	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	103171523	12A2p6	cell line	sgMsh2	103171523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	51	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon2:c.T391C:p.F131L	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.5741369	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	103850828	12A2p6	cell line	sgMsh2	103850828	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	38	0	0	NA	exonic	Erbin	nonsynonymous SNV	"Erbin:NM_001005868:exon15:c.C1223A:p.P408H,Erbin:NM_001289473:exon15:c.C1223A:p.P408H,Erbin:NM_001289474:exon15:c.C1223A:p.P408H,Erbin:NM_001289475:exon15:c.C1223A:p.P408H"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9622963	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	104154329	12A2p6	cell line	sgMsh2	104154329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	364	0	0	NA	exonic	Trappc13	synonymous SNV	"Trappc13:NM_001093759:exon7:c.A513G:p.P171P,Trappc13:NM_001093760:exon7:c.A513G:p.P171P,Trappc13:NM_001360778:exon7:c.A513G:p.P171P,Trappc13:NM_025879:exon7:c.A513G:p.P171P"	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9974624	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr13	104493669	12A2p6	cell line	sgMsh2	104493669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	200	0	0	NA	exonic	Adamts6	nonsynonymous SNV	Adamts6:NM_001081020:exon25:c.A3319G:p.R1107G	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9552388	CAG	nonsynonymous	CAGA	8	CAGACAGA	NA
M6_p20	chr13	105444804	12A2p6	cell line	sgMsh2	105444804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	102	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.C551A:p.P184H	13qD1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.7156505	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	106964365	12A2p6	cell line	sgMsh2	106964365	T	-	Deletion	Mutect2;Vardict	2	0.077	156	0	0	NA	exonic	Kif2a	stopgain	"Kif2a:NM_001145779:exon19:c.2008delA:p.I670fs*0,Kif2a:NM_001378938:exon19:c.1951delA:p.I651fs*0,Kif2a:NM_001374727:exon20:c.2122delA:p.I708fs*0,Kif2a:NM_001378936:exon20:c.1870delA:p.I624fs*0,Kif2a:NM_001378937:exon20:c.2065delA:p.I689fs*0,Kif2a:NM_001378939:exon20:c.1927delA:p.I643fs*0,Kif2a:NM_001378940:exon20:c.2065delA:p.I689fs*0,Kif2a:NM_008442:exon21:c.2041delA:p.I681fs*0"	13qD2.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.361614761	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M6_p20	chr13	107748230	12A2p6	cell line	sgMsh2	107748230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	215	0	0	NA	exonic	Zswim6	synonymous SNV	Zswim6:NM_145456:exon9:c.A1440G:p.L480L	13qD2.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9636611	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr13	110061828	12A2p6	cell line	sgMsh2	110061828	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	26	0	0	NA	exonic	Rab3c	nonsynonymous SNV	"Rab3c:NM_001360099:exon5:c.A665C:p.N222T,Rab3c:NM_023852:exon5:c.A671C:p.N224T"	13qD2.1	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.6972824	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	49	0	0	NA	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.000774491	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	112532945	12A2p6	cell line	sgMsh2	112532945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	232	0	0	NA	exonic	Il31ra	nonsynonymous SNV	Il31ra:NM_139299:exon12:c.G1185T:p.E395D	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9976293	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	112895502	12A2p6	cell line	sgMsh2	112895502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	142	0	0	NA	exonic	Mtrex	nonsynonymous SNV	Mtrex:NM_028151:exon16:c.A1775G:p.H592R	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.6724849	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	114849343	12A2p6	cell line	sgMsh2	114849343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	374	0	0	NA	exonic	Itga2	synonymous SNV	Itga2:NM_008396:exon24:c.T2895C:p.G965G	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	1.09E-09	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr13	114970490	12A2p6	cell line	sgMsh2	114970490	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	231	0	0	NA	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon24:c.T3064A:p.S1022T	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	7.44E-09	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	116305373	12A2p6	cell line	sgMsh2	116305373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	43	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon3:c.T323C:p.V108A	13qD2.2	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	1	1	0.9745283	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Vardict	2	0.058	89	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	4	2	2	0.93	4.367554902	NA	1	0.272385144	3	0.996351	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	7907282	12A2p6	cell line	sgMsh2	7907282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon22:c.A3854C:p.N1285T,Flnb:NM_134080:exon22:c.A3854C:p.N1285T"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	1	1	0.9975066	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	209	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9981993	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.12	47	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.8589684	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	12522267	12A2p6	cell line	sgMsh2	12522267	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	145	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon11:c.G1896T:p.Q632H,Cadps:NM_001359919:exon11:c.G1896T:p.Q632H,Cadps:NM_001359920:exon11:c.G1896T:p.Q632H,Cadps:NM_001359921:exon11:c.G1896T:p.Q632H,Cadps:NM_012061:exon11:c.G1896T:p.Q632H"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.8783627	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	12705816	12A2p6	cell line	sgMsh2	12705816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	74	0	0	NA	exonic	Cadps	nonsynonymous SNV	"Cadps:NM_001042617:exon3:c.G578T:p.R193L,Cadps:NM_001359919:exon3:c.G578T:p.R193L,Cadps:NM_001359920:exon3:c.G578T:p.R193L,Cadps:NM_001359921:exon3:c.G578T:p.R193L,Cadps:NM_012061:exon3:c.G578T:p.R193L"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	9.12E-05	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	14771278	12A2p6	cell line	sgMsh2	14771278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	250	0	0	NA	exonic	Slc4a7	synonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360515:exon15:c.A1992G:p.T664T,Slc4a7:NM_001360516:exon15:c.A1968G:p.T656T,Slc4a7:NM_001360517:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360520:exon15:c.A1953G:p.T651T,Slc4a7:NM_001360504:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360505:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360506:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360508:exon16:c.A2361G:p.T787T,Slc4a7:NM_001360509:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360510:exon16:c.A2322G:p.T774T,Slc4a7:NM_001360511:exon16:c.A2067G:p.T689T,Slc4a7:NM_001360512:exon16:c.A2052G:p.T684T,Slc4a7:NM_001360513:exon16:c.A2028G:p.T676T,Slc4a7:NM_001360514:exon16:c.A2013G:p.T671T"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	1	1	2.38E-09	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	14771285	12A2p6	cell line	sgMsh2	14771285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	246	0	0	NA	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360515:exon15:c.A1999G:p.S667G,Slc4a7:NM_001360516:exon15:c.A1975G:p.S659G,Slc4a7:NM_001360517:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360520:exon15:c.A1960G:p.S654G,Slc4a7:NM_001360504:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360505:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360506:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360508:exon16:c.A2368G:p.S790G,Slc4a7:NM_001360509:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360510:exon16:c.A2329G:p.S777G,Slc4a7:NM_001360511:exon16:c.A2074G:p.S692G,Slc4a7:NM_001360512:exon16:c.A2059G:p.S687G,Slc4a7:NM_001360513:exon16:c.A2035G:p.S679G,Slc4a7:NM_001360514:exon16:c.A2020G:p.S674G"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	1	1	2.91E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	14774979	12A2p6	cell line	sgMsh2	14774979	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	114	0	0	NA	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360515:exon18:c.T2393A:p.L798H,Slc4a7:NM_001360516:exon18:c.T2369A:p.L790H,Slc4a7:NM_001360517:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360520:exon18:c.T2354A:p.L785H,Slc4a7:NM_001360504:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360505:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360506:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360508:exon19:c.T2762A:p.L921H,Slc4a7:NM_001360509:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360510:exon19:c.T2723A:p.L908H,Slc4a7:NM_001360511:exon19:c.T2468A:p.L823H,Slc4a7:NM_001360512:exon19:c.T2453A:p.L818H,Slc4a7:NM_001360513:exon19:c.T2429A:p.L810H,Slc4a7:NM_001360514:exon19:c.T2414A:p.L805H"	14qA1	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999165	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	16277879	12A2p6	cell line	sgMsh2	16277879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	125	0	0	NA	exonic	Ngly1	nonsynonymous SNV	"Ngly1:NM_001362432:exon5:c.A673G:p.N225D,Ngly1:NM_001362433:exon5:c.A730G:p.N244D,Ngly1:NM_021504:exon5:c.A730G:p.N244D"	14qA2	chr14-7548571-19566630	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999657	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	116	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.563555471	2	0.992877	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	20409093	12A2p6	cell line	sgMsh2	20409093	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon18:c.C2033T:p.T678I,Cfap70:NM_001163639:exon18:c.C2069T:p.T690I,Cfap70:NM_029698:exon19:c.C2201T:p.T734I"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9997796	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	20714697	12A2p6	cell line	sgMsh2	20714697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	38	0	0	NA	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon10:c.A2134G:p.T712A,Zswim8:NM_027996:exon10:c.A2134G:p.T712A,Zswim8:NM_001252082:exon11:c.A2032G:p.T678A"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	2	1	1	0.9622963	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	20840609	12A2p6	cell line	sgMsh2	20840609	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	144	0	0	NA	exonic	Plau	nonsynonymous SNV	Plau:NM_008873:exon9:c.A947C:p.E316A	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.460236968	2	0.6670242	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	21660934	12A2p6	cell line	sgMsh2	21660934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	58	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon13:c.A1948G:p.T650A,Kat6b:NM_017479:exon13:c.A1948G:p.T650A"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9922977	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	21792527	12A2p6	cell line	sgMsh2	21792527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	165	0	0	NA	exonic	Samd8	nonsynonymous SNV	"Samd8:NM_001359953:exon5:c.A916C:p.T306P,Samd8:NM_001359954:exon5:c.A967C:p.T323P,Samd8:NM_026283:exon5:c.A1105C:p.T369P"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999987	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	61	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.967436892	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr14	24306945	12A2p6	cell line	sgMsh2	24306945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	162	0	0	NA	exonic	E330034G19Rik	nonsynonymous SNV	"E330034G19Rik:NM_001033214:exon5:c.T743C:p.I248T,E330034G19Rik:NM_001346536:exon5:c.T536C:p.I179T,E330034G19Rik:NM_001379547:exon5:c.T548C:p.I183T"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999983	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	204	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.572948062	2	0.9998929	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	27384212	12A2p6	cell line	sgMsh2	27384212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	127	0	0	NA	exonic	Arhgef3	nonsynonymous SNV	"Arhgef3:NM_001289687:exon4:c.A431T:p.K144I,Arhgef3:NM_001289688:exon4:c.A449T:p.K150I,Arhgef3:NM_027871:exon5:c.A452T:p.K151I,Arhgef3:NM_001289686:exon7:c.A512T:p.K171I"	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999709	AAA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr14	27481131	12A2p6	cell line	sgMsh2	27481131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Tasor	nonsynonymous SNV	Tasor:NM_001114879:exon24:c.A4657G:p.I1553V	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999165	AAT	nonsynonymous	ATTG	8	ATTGATTG	NA
M6_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	135	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.587036949	2	0.9976568	GAA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Vardict	2	0.131	62	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.615214723	NA	NA	TCC	frameshift	NA	NA	NA	-1
M6_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	64	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.59642954	2	0.9255673	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	30682803	12A2p6	cell line	sgMsh2	30682803	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	379	0	0	NA	exonic	Rft1	synonymous SNV	Rft1:NM_177815:exon11:c.T1155C:p.N385N	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.497807333	2	0.9977475	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	63	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9948479	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	70	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.51189622	2	0.8798094	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Vardict	2	0.14	237	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.657481383	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr14	31015289	12A2p6	cell line	sgMsh2	31015289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	200	0	0	NA	exonic	Gnl3	stopgain	Gnl3:NM_153547:exon7:c.A631T:p.R211X	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.94865171	1	0.999998	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	184	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.446148081	3	0.5683726	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31151199	12A2p6	cell line	sgMsh2	31151199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	249	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon30:c.G3243A:p.T1081T	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	2.50E-09	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr14	31157712	12A2p6	cell line	sgMsh2	31157712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	72	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon19:c.T2028C:p.S676S	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.981525779	1	0.9962143	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr14	31270161	12A2p6	cell line	sgMsh2	31270161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	119	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon57:c.A8963G:p.N2988S	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999443	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.133	123	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.624607314	2	0.9878825	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr14	31295595	12A2p6	cell line	sgMsh2	31295595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	127	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon27:c.A4478G:p.D1493G	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999709	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31296323	12A2p6	cell line	sgMsh2	31296323	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	128	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon26:c.T4237A:p.W1413R	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.784281364	1	0.8615966	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31300760	12A2p6	cell line	sgMsh2	31300760	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	88	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon20:c.A3419C:p.E1140A	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.953348005	1	0.9975119	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31302344	12A2p6	cell line	sgMsh2	31302344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	81	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon17:c.T2777A:p.I926N	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.939259119	1	0.9943512	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31347762	12A2p6	cell line	sgMsh2	31347762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	202	0	0	NA	exonic	Capn7	nonsynonymous SNV	"Capn7:NM_001360187:exon5:c.C410A:p.P137H,Capn7:NM_009796:exon5:c.C542A:p.P181H"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.962740597	1	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	31552962	12A2p6	cell line	sgMsh2	31552962	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	34	0	0	NA	exonic	Colq	nonsynonymous SNV	Colq:NM_009937:exon3:c.T248A:p.L83Q	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9486092	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	32180565	12A2p6	cell line	sgMsh2	32180565	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	54	0	0	NA	exonic	Timm23	nonsynonymous SNV	Timm23:NM_016897:exon7:c.A620C:p.Q207P	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9893843	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	32337491	12A2p6	cell line	sgMsh2	32337491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	317	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon10:c.A1037G:p.N346S	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	126	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.615214723	2	0.9923352	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	32347610	12A2p6	cell line	sgMsh2	32347610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	40	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon24:c.T3014C:p.F1005S	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9677517	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	32660305	12A2p6	cell line	sgMsh2	32660305	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.232	17	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.G3702T:p.E1234D	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.821154	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	33633039	12A2p6	cell line	sgMsh2	33633039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	192	0	0	NA	exonic	Ptpn20	nonsynonymous SNV	Ptpn20:NM_008978:exon10:c.T1070C:p.V357A	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	34249237	12A2p6	cell line	sgMsh2	34249237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	240	0	0	NA	exonic	Shld2	synonymous SNV	"Shld2:NM_001360074:exon5:c.T1690C:p.L564L,Shld2:NM_029389:exon6:c.T1690C:p.L564L"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	4.11E-09	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	120	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.723229521	2	0.6416501	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	35452313	12A2p6	cell line	sgMsh2	35452313	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	153	0	0	NA	exonic	Grid1	stopgain	Grid1:NM_008166:exon12:c.G1911A:p.W637X	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999964	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	123	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.43675549	3	0.5977563	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	36940587	12A2p6	cell line	sgMsh2	36940587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	175	0	0	NA	exonic	Ccser2	synonymous SNV	"Ccser2:NM_001347502:exon1:c.T639C:p.T213T,Ccser2:NM_027045:exon2:c.T639C:p.T213T"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999994	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	38371303	12A2p6	cell line	sgMsh2	38371303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	185	0	0	NA	exonic	Nrg3	stopgain	"Nrg3:NM_001190187:exon9:c.G1605A:p.W535X,Nrg3:NM_008734:exon9:c.G1608A:p.W536X"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.840636911	1	0.997137	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	40913481	12A2p6	cell line	sgMsh2	40913481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	57	0	0	NA	exonic	Tspan14	nonsynonymous SNV	"Tspan14:NM_001316748:exon6:c.T457C:p.C153R,Tspan14:NM_145928:exon6:c.T457C:p.C153R"	14qB	chr14-19751082-41183403	3	2	1	0.93	4.367554902	NA	1	0.882903572	1	0.9355725	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	189	0	0	NA	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.427362899	3	0.8372551	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	173	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.328740692	3	0.9996171	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr14	46853909	12A2p6	cell line	sgMsh2	46853909	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	49	0	0	NA	exonic	Cgrrf1	nonsynonymous SNV	"Cgrrf1:NM_001360454:exon6:c.A886G:p.S296G,Cgrrf1:NM_026832:exon6:c.A889G:p.S297G"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9841726	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	75	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9980431	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	47701134	12A2p6	cell line	sgMsh2	47701134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	260	0	0	NA	exonic	Ktn1	nonsynonymous SNV	"Ktn1:NM_001347522:exon19:c.T2282C:p.V761A,Ktn1:NM_008477:exon19:c.T2282C:p.V761A,Ktn1:NM_001293635:exon20:c.T2282C:p.V761A,Ktn1:NM_001347519:exon20:c.T2282C:p.V761A,Ktn1:NM_001347520:exon20:c.T2282C:p.V761A,Ktn1:NM_001347521:exon20:c.T2282C:p.V761A,Ktn1:NM_001347523:exon20:c.T2282C:p.V761A,Ktn1:NM_001347524:exon20:c.T2282C:p.V761A,Ktn1:NM_001347525:exon20:c.T2282C:p.V761A,Ktn1:NM_001347526:exon20:c.T2282C:p.V761A,Ktn1:NM_001347527:exon20:c.T2282C:p.V761A,Ktn1:NM_001347528:exon20:c.T2282C:p.V761A,Ktn1:NM_001379486:exon20:c.T2282C:p.V761A,Ktn1:NM_001379487:exon20:c.T2279C:p.V760A,Ktn1:NM_001379488:exon20:c.T2279C:p.V760A,Ktn1:NM_001379489:exon20:c.T2279C:p.V760A,Ktn1:NM_001379490:exon20:c.T2282C:p.V761A,Ktn1:NM_001379491:exon20:c.T2282C:p.V761A,Ktn1:NM_001379492:exon20:c.T2282C:p.V761A,Ktn1:NM_001379493:exon20:c.T2282C:p.V761A,Ktn1:NM_001379494:exon20:c.T2282C:p.V761A,Ktn1:NM_001379495:exon20:c.T2282C:p.V761A,Ktn1:NM_001293636:exon21:c.T1757C:p.V586A"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.742014704	1	0.5210682	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	48168284	12A2p6	cell line	sgMsh2	48168284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	121	0	0	NA	exonic	Peli2	synonymous SNV	Peli2:NM_033602:exon2:c.A165G:p.K55K	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999526	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.79	47	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M6_p20	chr14	48658834	12A2p6	cell line	sgMsh2	48658834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	96	0	0	NA	exonic	Otx2	synonymous SNV	"Otx2:NM_001360226:exon3:c.T766C:p.L256L,Otx2:NM_144841:exon3:c.T742C:p.L248L,Otx2:NM_001286483:exon4:c.T742C:p.L248L,Otx2:NM_001360225:exon4:c.T766C:p.L256L,Otx2:NM_001286481:exon5:c.T766C:p.L256L,Otx2:NM_001286482:exon5:c.T742C:p.L248L"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9996418	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	49074099	12A2p6	cell line	sgMsh2	49074099	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	205	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon2:c.A625C:p.I209L,Ap5m1:NM_144535:exon2:c.A625C:p.I209L"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.756103591	1	0.7331701	GAT	nonsynonymous	ATTTCT	14	ATTTCTATTTCTAT	NA
M6_p20	chr14	50360968	12A2p6	cell line	sgMsh2	50360968	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	233	0	0	NA	exonic	Tlr11	frameshift deletion	Tlr11:NM_205819:exon2:c.410delT:p.F139Lfs*8	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M6_p20	chr14	50393400	12A2p6	cell line	sgMsh2	50393400	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	132	0	0	NA	exonic	Olfr736	frameshift deletion	Olfr736:NM_146666:exon1:c.643delT:p.Y217Ifs*7	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	272	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.375703647	3	0.9996453	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	205	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.67157027	2	0.988416	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	50767276	12A2p6	cell line	sgMsh2	50767276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	73	0	0	NA	exonic	Ttc5	nonsynonymous SNV	"Ttc5:NM_001360545:exon8:c.T626G:p.L209W,Ttc5:NM_001080949:exon9:c.T1070G:p.L357W"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9977	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	50793705	12A2p6	cell line	sgMsh2	50793705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	117	0	0	NA	exonic	Ccnb1ip1	synonymous SNV	Ccnb1ip1:NM_001111119:exon2:c.T150C:p.A50A	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999345	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	84	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.779585069	1	0.7562502	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	128	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999731	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M6_p20	chr14	52215181	12A2p6	cell line	sgMsh2	52215181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	329	0	0	NA	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon19:c.A3880G:p.I1294V	14qC2	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	52226039	12A2p6	cell line	sgMsh2	52226039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	99	0	0	NA	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon9:c.A2147G:p.E716G	14qC2	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	1	1	0.999719	TTC	nonsynonymous	TACT	9	TACTTACTT	NA
M6_p20	chr14	52450765	12A2p6	cell line	sgMsh2	52450765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	290	0	0	NA	exonic	Olfr1509	synonymous SNV	Olfr1509:NM_020514:exon1:c.T351C:p.I117I	14qC2	chr14-44852972-53079320	3	2	1	0.93	4.367554902	NA	1	0.845333207	1	0.9999259	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr14	54439978	12A2p6	cell line	sgMsh2	54439978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	53	0	0	NA	exonic	Mmp14	nonsynonymous SNV	Mmp14:NM_008608:exon9:c.A1375T:p.I459F	14qC2	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9884997	AAT	nonsynonymous	GGAA	8	GGAAGGAA	NA
M6_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	61	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9939481	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	54642734	12A2p6	cell line	sgMsh2	54642734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	29	0	0	NA	exonic	Acin1	synonymous SNV	"Acin1:NM_001242605:exon12:c.C1692T:p.R564R,Acin1:NM_001242606:exon12:c.C1653T:p.R551R,Acin1:NM_001085472:exon13:c.C1740T:p.R580R,Acin1:NM_019567:exon13:c.C1899T:p.R633R,Acin1:NM_001374770:exon18:c.C3891T:p.R1297R,Acin1:NM_001085473:exon19:c.C3975T:p.R1325R,Acin1:NM_023190:exon19:c.C4011T:p.R1337R"	14qC2	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9248375	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr14	55065991	12A2p6	cell line	sgMsh2	55065991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	38	0	0	NA	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A4535G:p.Q1512R	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9622963	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	55234674	12A2p6	cell line	sgMsh2	55234674	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	105	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.T21C:p.P7P	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998271	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr14	55651469	12A2p6	cell line	sgMsh2	55651469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	51	0	0	NA	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon3:c.A451G:p.S151G,Tssk4:NM_001253889:exon3:c.A451G:p.S151G"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9865062	CAG	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	136	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999859	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	56796690	12A2p6	cell line	sgMsh2	56796690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	192	0	0	NA	exonic	Zmym5	nonsynonymous SNV	"Zmym5:NM_001253752:exon7:c.A1063G:p.M355V,Zmym5:NM_001253753:exon7:c.A1063G:p.M355V,Zmym5:NM_144842:exon7:c.A1063G:p.M355V"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	56804452	12A2p6	cell line	sgMsh2	56804452	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	100	0	0	NA	exonic	Zmym5	frameshift deletion	"Zmym5:NM_001253752:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_001253753:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_144842:exon3:c.368delA:p.N123Mfs*17"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr14	56959772	12A2p6	cell line	sgMsh2	56959772	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	145	0	0	NA	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon25:c.T3996A:p.S1332R,Zmym2:NM_029498:exon25:c.T3996A:p.S1332R"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.90638505	1	0.9995123	GTT	nonsynonymous	GTTCTA	12	GTTCTAGTTCTA	NA
M6_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	220	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.347525874	3	0.9998216	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	57480762	12A2p6	cell line	sgMsh2	57480762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	214	0	0	NA	exonic	Ift88	synonymous SNV	Ift88:NM_009376:exon19:c.C1791T:p.Y597Y	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	2.65E-08	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr14	57597104	12A2p6	cell line	sgMsh2	57597104	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.148	37	0	0	NA	exonic	Xpo4	nonsynonymous SNV	"Xpo4:NM_020506:exon15:c.A2018C:p.E673A,Xpo4:NM_001368697:exon16:c.A1796C:p.E599A"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.695051748	2	0.5905361	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Vardict	2	0.123	221	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.577644358	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr14	59413492	12A2p6	cell line	sgMsh2	59413492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	0	0	NA	exonic	Gm45935;Setdb2	synonymous SNV	"Setdb2:NM_001320721:exon8:c.A1275G:p.K425K,Setdb2:NM_001320720:exon9:c.A1341G:p.K447K,Gm45935:NM_001320725:exon9:c.A1341G:p.K447K"	14qC3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999345	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr14	61204235	12A2p6	cell line	sgMsh2	61204235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	207	0	0	NA	exonic	Sacs	synonymous SNV	Sacs:NM_015788:exon10:c.T3729C:p.S1243S	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.680962861	2	0.9797509	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	189	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.479022151	2	0.8848064	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M6_p20	chr14	64861558	12A2p6	cell line	sgMsh2	64861558	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	216	0	0	NA	exonic	Hmbox1	frameshift deletion	"Hmbox1:NM_001347626:exon5:c.655delA:p.R219Gfs*17,Hmbox1:NM_001347627:exon5:c.655delA:p.R219Gfs*17,Hmbox1:NM_177338:exon5:c.655delA:p.R219Gfs*17"	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr14	65076263	12A2p6	cell line	sgMsh2	65076263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	47	0	0	NA	exonic	Extl3	nonsynonymous SNV	"Extl3:NM_001360385:exon2:c.T1469G:p.V490G,Extl3:NM_018788:exon3:c.T1469G:p.V490G"	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.868814685	1	0.8835181	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	86	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9991957	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.109	96	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.51189622	2	0.9269593	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M6_p20	chr14	66143923	12A2p6	cell line	sgMsh2	66143923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	210	0	0	NA	exonic	Chrna2	synonymous SNV	Chrna2:NM_144803:exon4:c.T228C:p.D76D	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	3.63E-08	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr14	66297304	12A2p6	cell line	sgMsh2	66297304	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.334	12	0	0	NA	exonic	Trim35	nonsynonymous SNV	Trim35:NM_029979:exon1:c.G235A:p.A79T	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.7487509	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Vardict	2	0.089	173	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.417970308	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr14	68579175	12A2p6	cell line	sgMsh2	68579175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	42	0	0	NA	exonic	Adamdec1	nonsynonymous SNV	Adamdec1:NM_021475:exon3:c.T263C:p.V88A	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9724397	AAC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	227	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.35222217	3	0.9998017	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr14	70139642	12A2p6	cell line	sgMsh2	70139642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	52	0	0	NA	exonic	Ccar2	nonsynonymous SNV	Ccar2:NM_146055:exon19:c.A2368C:p.K790Q	14qD2	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9875423	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.104	223	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.488414742	2	0.9557786	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	75206279	12A2p6	cell line	sgMsh2	75206279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	91	0	0	NA	exonic	Lcp1	nonsynonymous SNV	"Lcp1:NM_001247984:exon7:c.A734C:p.N245T,Lcp1:NM_008879:exon8:c.A734C:p.N245T"	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9994632	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	75206283	12A2p6	cell line	sgMsh2	75206283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	92	0	0	NA	exonic	Lcp1	synonymous SNV	"Lcp1:NM_001247984:exon7:c.A738G:p.E246E,Lcp1:NM_008879:exon8:c.A738G:p.E246E"	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9995049	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	79661991	12A2p6	cell line	sgMsh2	79661991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	126	0	0	NA	exonic	Cnmd	synonymous SNV	"Cnmd:NM_001310655:exon1:c.A21G:p.K7K,Cnmd:NM_010701:exon1:c.A21G:p.K7K"	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999684	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr14	84447137	12A2p6	cell line	sgMsh2	84447137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	62	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.A1043G:p.N348S	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.854725798	1	0.9125972	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	84448194	12A2p6	cell line	sgMsh2	84448194	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	183	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G2100T:p.W700C	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.807762842	1	0.9801013	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	84448627	12A2p6	cell line	sgMsh2	84448627	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	46	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.C2533T:p.P845S	14qD3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9799098	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	87472219	12A2p6	cell line	sgMsh2	87472219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	134	0	0	NA	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon4:c.T336C:p.S112S,Tdrd3:NM_172605:exon4:c.T336C:p.S112S"	14qE1	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999835	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr14	101458136	12A2p6	cell line	sgMsh2	101458136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	139	0	0	NA	exonic	Tbc1d4	synonymous SNV	Tbc1d4:NM_001081278:exon14:c.T2676G:p.P892P	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.770192477	1	0.7949352	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	354	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.502503628	2	0.9982769	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	103177262	12A2p6	cell line	sgMsh2	103177262	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	169	0	0	NA	exonic	Mycbp2	frameshift deletion	Mycbp2:NM_207215:exon53:c.7713delT:p.Q2573Rfs*13	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr14	103248510	12A2p6	cell line	sgMsh2	103248510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	50	0	0	NA	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon22:c.T3114C:p.A1038A	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9853852	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	104479274	12A2p6	cell line	sgMsh2	104479274	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	80	0	0	NA	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T1662G:p.G554G	14qE2.3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9986935	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	121	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.417970308	3	0.7746413	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	61	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.59642954	2	0.9151562	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	108912978	12A2p6	cell line	sgMsh2	108912978	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	129	0	0	NA	exonic	Slitrk1	synonymous SNV	Slitrk1:NM_199065:exon1:c.G300T:p.G100G	14qE3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.427362899	3	9.18E-07	CCC	synonymous	C	5	CCCCC	NA
M6_p20	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	138	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.563555471	2	0.9971966	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr14	115552293	12A2p6	cell line	sgMsh2	115552293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	107	0	0	NA	exonic	Gpc5	synonymous SNV	Gpc5:NM_175500:exon6:c.T1359C:p.P453P	14qE4	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998529	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	210	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.577644358	2	0.9999331	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	319	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53105048-123291781	3	2	1	0.93	4.367554902	NA	1	0.39448883	3	0.9992359	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	123293438	12A2p6	cell line	sgMsh2	123293438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	515	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon37:c.A4187G:p.H1396R	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	123299215	12A2p6	cell line	sgMsh2	123299215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	125	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon32:c.A3623G:p.Q1208R	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	182	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	415	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	4057686	12A2p6	cell line	sgMsh2	4057686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	291	0	0	NA	exonic	Oxct1	synonymous SNV	Oxct1:NM_024188:exon6:c.T582C:p.G194G	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.9947236	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr15	6483221	12A2p6	cell line	sgMsh2	6483221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	111	0	0	NA	exonic	C9	nonsynonymous SNV	"C9:NM_001368420:exon6:c.A784G:p.T262A,C9:NM_013485:exon6:c.A784G:p.T262A,C9:NM_001368421:exon7:c.A658G:p.T220A"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5324814	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	6794098	12A2p6	cell line	sgMsh2	6794098	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	104	0	0	NA	exonic	Rictor	synonymous SNV	Rictor:NM_030168:exon35:c.A4755G:p.S1585S	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9802794	CAG	synonymous	CAGC	8	CAGCCAGC	NA
M6_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	210	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.309955509	3	0.999986	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	6827115	12A2p6	cell line	sgMsh2	6827115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	227	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon11:c.T1550C:p.M517T,Osmr:NM_011019:exon11:c.T1550C:p.M517T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.8548364	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	7185572	12A2p6	cell line	sgMsh2	7185572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	153	0	0	NA	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.T2159C:p.I720T,Lifr:NM_013584:exon16:c.T2159C:p.I720T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9307388	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	8042785	12A2p6	cell line	sgMsh2	8042785	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Wdr70	synonymous SNV	Wdr70:NM_001081402:exon7:c.C621T:p.Y207Y	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999563	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr15	8176258	12A2p6	cell line	sgMsh2	8176258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	164	0	0	NA	exonic	Cplane1	synonymous SNV	Cplane1:NM_001162906:exon6:c.T477C:p.G159G	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	8.81E-08	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr15	8186270	12A2p6	cell line	sgMsh2	8186270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	274	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon11:c.T1309C:p.S437P	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.9985913	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	8201354	12A2p6	cell line	sgMsh2	8201354	T	-	Deletion	Mutect2;Vardict	2	0.197	99	0	0	NA	exonic	Cplane1	frameshift deletion	Cplane1:NM_001162906:exon18:c.3114delT:p.F1039Lfs*12	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.925170232	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr15	8296778	12A2p6	cell line	sgMsh2	8296778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	168	0	0	NA	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon43:c.T7346C:p.I2449T,Nipbl:NM_201232:exon43:c.T7346C:p.I2449T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999989	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	8351084	12A2p6	cell line	sgMsh2	8351084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	53	0	0	NA	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon10:c.A2223G:p.E741E,Nipbl:NM_201232:exon10:c.A2223G:p.E741E"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.000738003	CTT	synonymous	GGCC	8	GGCCGGCC	NA
M6_p20	chr15	8650879	12A2p6	cell line	sgMsh2	8650879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	258	0	0	NA	exonic	Slc1a3	nonsynonymous SNV	Slc1a3:NM_148938:exon4:c.C494T:p.T165I	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.999999	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	9716373	12A2p6	cell line	sgMsh2	9716373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	149	0	0	NA	exonic	Spef2	nonsynonymous SNV	"Spef2:NM_001305044:exon7:c.A955G:p.R319G,Spef2:NM_177123:exon7:c.A955G:p.R319G,Spef2:NM_001305042:exon8:c.A1126G:p.R376G"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.5237258	CTT	nonsynonymous	TCTT	8	TCTTTCTT	NA
M6_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	199	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.220725893	3	3.34E-08	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	10393753	12A2p6	cell line	sgMsh2	10393753	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	503	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon11:c.A1216C:p.S406R,Agxt2:NM_001310735:exon11:c.A1132C:p.S378R,Agxt2:NM_001310736:exon11:c.A1129C:p.S377R"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.324044396	3	1.01E-09	CAG	nonsynonymous	CTTCA	10	CTTCACTTCA	NA
M6_p20	chr15	10492812	12A2p6	cell line	sgMsh2	10492812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	399	0	0	NA	exonic	Rad1	nonsynonymous SNV	"Rad1:NM_001289447:exon5:c.A614G:p.K205R,Rad1:NM_001289448:exon5:c.A614G:p.K205R,Rad1:NM_011232:exon5:c.A614G:p.K205R"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.9907984	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	10988924	12A2p6	cell line	sgMsh2	10988924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	exonic	Amacr	nonsynonymous SNV	Amacr:NM_008537:exon4:c.T715C:p.F239L	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999932	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	122	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999563	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	12339738	12A2p6	cell line	sgMsh2	12339738	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	240	0	0	NA	exonic	Golph3	frameshift deletion	Golph3:NM_025673:exon2:c.336delA:p.S114Vfs*2	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.803066546	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr15	12373410	12A2p6	cell line	sgMsh2	12373410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	138	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A6638G:p.K2213R	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.999988	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	12374447	12A2p6	cell line	sgMsh2	12374447	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	77	0	0	NA	exonic	Pdzd2	synonymous SNV	Pdzd2:NM_001081064:exon21:c.A5601G:p.S1867S	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9162954	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	12883238	12A2p6	cell line	sgMsh2	12883238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	139	0	0	NA	exonic	Drosha	synonymous SNV	"Drosha:NM_001130149:exon18:c.T2436C:p.T812T,Drosha:NM_026799:exon18:c.T2436C:p.T812T"	15qA1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.999989	CTG	synonymous	CAAA	9	CAAACAAAC	NA
M6_p20	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Vardict	2	0.059	136	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.27708144	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr15	16848552	12A2p6	cell line	sgMsh2	16848552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	140	0	0	NA	exonic	Cdh9	synonymous SNV	Cdh9:NM_009869:exon8:c.C1317T:p.I439I	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.8226147	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr15	16855846	12A2p6	cell line	sgMsh2	16855846	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	200	0	0	NA	exonic	Cdh9	synonymous SNV	Cdh9:NM_009869:exon12:c.C1971A:p.T657T	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.206637006	3	1.12E-08	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr15	21358976	12A2p6	cell line	sgMsh2	21358976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	296	0	0	NA	exonic	Cdh12	nonsynonymous SNV	Cdh12:NM_001008420:exon3:c.A485G:p.D162G	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9997373	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M6_p20	chr15	22714533	12A2p6	cell line	sgMsh2	22714533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	410	0	0	NA	exonic	Hnrnpa1l2-ps2	nonsynonymous SNV	Hnrnpa1l2-ps2:NM_001165971:exon1:c.G298T:p.A100S	15qA2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9999997	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	25701571	12A2p6	cell line	sgMsh2	25701571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	222	0	0	NA	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon3:c.T130A:p.Y44N	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	1.43E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	25742429	12A2p6	cell line	sgMsh2	25742429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	186	0	0	NA	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon18:c.A1828G:p.T610A	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.781142	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	27571642	12A2p6	cell line	sgMsh2	27571642	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	202	0	0	NA	exonic	Ank	synonymous SNV	Ank:NM_020332:exon8:c.G999A:p.A333A	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9998692	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr15	27833070	12A2p6	cell line	sgMsh2	27833070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	54	0	0	NA	exonic	Trio	synonymous SNV	Trio:NM_001081302:exon22:c.A3657G:p.K1219K	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9893843	ATT	synonymous	T	5	TTTTT	NA
M6_p20	chr15	28326571	12A2p6	cell line	sgMsh2	28326571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	110	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon36:c.T5925C:p.P1975P	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9998846	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	167	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.9969789	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	28372359	12A2p6	cell line	sgMsh2	28372359	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	252	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon52:c.C8755A:p.R2919S	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	28378421	12A2p6	cell line	sgMsh2	28378421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	210	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon53:c.T8902C:p.F2968L	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9958918	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M6_p20	chr15	28408355	12A2p6	cell line	sgMsh2	28408355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	169	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon62:c.T10485C:p.G3495G	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9997661	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	28421022	12A2p6	cell line	sgMsh2	28421022	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	353	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon67:c.A11504G:p.E3835G	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.201940711	3	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	28445079	12A2p6	cell line	sgMsh2	28445079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	347	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon72:c.T12360C:p.H4120H	15qB1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.982841	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	30905701	12A2p6	cell line	sgMsh2	30905701	A	-	Deletion	Mutect2;Vardict	2	0.149	103	0	0	NA	exonic	Ctnnd2	frameshift deletion	"Ctnnd2:NM_001355502:exon15:c.2493delA:p.I834Sfs*8,Ctnnd2:NM_008729:exon15:c.2493delA:p.I834Sfs*8"	15qB2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.699748043	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr15	31616962	12A2p6	cell line	sgMsh2	31616962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	73	0	0	NA	exonic	Atpsckmt	nonsynonymous SNV	"Atpsckmt:NM_026546:exon5:c.A572G:p.D191G,Atpsckmt:NM_001356313:exon6:c.A338G:p.D113G"	15qB2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9977	GAC	nonsynonymous	ACCAC	10	ACCACACCAC	NA
M6_p20	chr15	33028073	12A2p6	cell line	sgMsh2	33028073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	130	0	0	NA	exonic	Sdc2	synonymous SNV	Sdc2:NM_008304:exon4:c.A336G:p.E112E	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.8328628	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.154	334	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.723229521	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M6_p20	chr15	34839911	12A2p6	cell line	sgMsh2	34839911	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	215	0	0	NA	exonic	Kcns2	synonymous SNV	"Kcns2:NM_001271704:exon2:c.T1419C:p.D473D,Kcns2:NM_181317:exon2:c.T1419C:p.D473D"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	2.45E-08	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	35372084	12A2p6	cell line	sgMsh2	35372084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	218	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T124G:p.L42V	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	9.99E-08	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	35378909	12A2p6	cell line	sgMsh2	35378909	T	-	Deletion	Mutect2;Vardict	2	0.136	125	0	0	NA	exonic	Vps13b	frameshift deletion	Vps13b:NM_177151:exon3:c.168delT:p.L58fs*0	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.638696201	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr15	35869439	12A2p6	cell line	sgMsh2	35869439	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.105	91	0	0	NA	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon44:c.A8088G:p.K2696K	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.8590527	AAC	synonymous	A	5	AAAAA	NA
M6_p20	chr15	35878713	12A2p6	cell line	sgMsh2	35878713	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	284	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon49:c.A8857G:p.T2953A	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.878207276	1	0.9999953	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	195	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.958044301	1	0.9999984	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	35910807	12A2p6	cell line	sgMsh2	35910807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	240	0	0	NA	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon56:c.T10716C:p.H3572H	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9999858	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	36245599	12A2p6	cell line	sgMsh2	36245599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	146	0	0	NA	exonic	Rnf19a	nonsynonymous SNV	Rnf19a:NM_013923:exon8:c.A1499G:p.N500S	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.6344148	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	99	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.997111	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M6_p20	chr15	38018942	12A2p6	cell line	sgMsh2	38018942	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	103	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon19:c.T2364C:p.S788S,Ubr5:NM_001112721:exon19:c.T2346C:p.S782S"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9583884	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	38037822	12A2p6	cell line	sgMsh2	38037822	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	173	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon9:c.T1092C:p.P364P,Ubr5:NM_001112721:exon9:c.T1074C:p.P358P"	15qB3.1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.507199924	2	0.9772159	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	43511750	12A2p6	cell line	sgMsh2	43511750	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	297	0	0	NA	exonic	Emc2	synonymous SNV	Emc2:NM_025736:exon9:c.T642C:p.Y214Y	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.9526528	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr15	44405891	12A2p6	cell line	sgMsh2	44405891	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	220	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.C372A:p.S124S,Nudcd1:NM_026149:exon3:c.C372A:p.S124S"	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.8985244	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr15	44529215	12A2p6	cell line	sgMsh2	44529215	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	446	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon38:c.G4945A:p.A1649T	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	0.9985986	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	44547035	12A2p6	cell line	sgMsh2	44547035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	178	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.T7937G:p.I2646S	15qB3.2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9996547	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	47607150	12A2p6	cell line	sgMsh2	47607150	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	346	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon64:c.T10129C:p.F3377L	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	47614086	12A2p6	cell line	sgMsh2	47614086	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	312	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon62:c.T10014A:p.S3338R	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.9149377	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	47657556	12A2p6	cell line	sgMsh2	47657556	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	162	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon53:c.G8391A:p.R2797R	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	0.6013445	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	211	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	3.35E-08	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	47698117	12A2p6	cell line	sgMsh2	47698117	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	174	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon43:c.T6795A:p.L2265L	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9515357	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr15	47755456	12A2p6	cell line	sgMsh2	47755456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	388	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon34:c.T5535C:p.G1845G	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.488414742	2	0.9922312	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	47857918	12A2p6	cell line	sgMsh2	47857918	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	258	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon28:c.G4628T:p.G1543V	15qB3.3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9999464	TCC	nonsynonymous	CGTC	8	CGTCCGTC	NA
M6_p20	chr15	50831671	12A2p6	cell line	sgMsh2	50831671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	137	0	0	NA	exonic	Trps1	synonymous SNV	"Trps1:NM_001310481:exon3:c.T1227C:p.A409A,Trps1:NM_001310485:exon3:c.T1227C:p.A409A,Trps1:NM_032000:exon3:c.T1215C:p.A405A"	15qC	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.674797	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	51964186	12A2p6	cell line	sgMsh2	51964186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	66	0	0	NA	exonic	Rad21	nonsynonymous SNV	Rad21:NM_009009:exon14:c.A1778C:p.N593T	15qC	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.946697	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	51967874	12A2p6	cell line	sgMsh2	51967874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	52	0	0	NA	exonic	Rad21	nonsynonymous SNV	Rad21:NM_009009:exon11:c.A1396G:p.T466A	15qC	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9670157	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	336	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.408577717	3	0.9970165	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	54598538	12A2p6	cell line	sgMsh2	54598538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	227	0	0	NA	exonic	Mal2	nonsynonymous SNV	Mal2:NM_178920:exon3:c.A428G:p.N143S	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9868841	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	146	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.8130047	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	104	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.770192477	1	0.7417555	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	57249707	12A2p6	cell line	sgMsh2	57249707	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	145	0	0	NA	exonic	Slc22a22	synonymous SNV	"Slc22a22:NM_001357930:exon8:c.T1135C:p.L379L,Slc22a22:NM_172378:exon9:c.T1135C:p.L379L"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.366311056	3	0.988269	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	58889378	12A2p6	cell line	sgMsh2	58889378	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	52	0	0	NA	exonic	Rnf139	nonsynonymous SNV	Rnf139:NM_175226:exon1:c.T65G:p.L22R	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9670157	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	59322881	12A2p6	cell line	sgMsh2	59322881	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	403	0	0	NA	exonic	Sqle	synonymous SNV	Sqle:NM_009270:exon4:c.T765C:p.D255D	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999999	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	60823463	12A2p6	cell line	sgMsh2	60823463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	79	0	0	NA	exonic	Lratd2	nonsynonymous SNV	Lratd2:NM_001162926:exon2:c.T433A:p.L145M	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9438344	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	65845945	12A2p6	cell line	sgMsh2	65845945	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	161	0	0	NA	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon9:c.G784A:p.G262R,Efr3a:NM_133766:exon9:c.G892A:p.G298R"	15qD1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9962977	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	66532791	12A2p6	cell line	sgMsh2	66532791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	384	0	0	NA	exonic	Tmem71	synonymous SNV	Tmem71:NM_172514:exon8:c.A747G:p.L249L	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9998093	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr15	66604238	12A2p6	cell line	sgMsh2	66604238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	132	0	0	NA	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon7:c.T719C:p.F240S	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999806	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	68178774	12A2p6	cell line	sgMsh2	68178774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	108	0	0	NA	exonic	Zfat	synonymous SNV	"Zfat:NM_001145888:exon7:c.C2397A:p.G799G,Zfat:NM_198644:exon7:c.C2376A:p.G792G"	15qD2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.8913376	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr15	71452455	12A2p6	cell line	sgMsh2	71452455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	395	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon17:c.T3662C:p.I1221T	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9997792	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	71462656	12A2p6	cell line	sgMsh2	71462656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	179	0	0	NA	exonic	Fam135b	synonymous SNV	Fam135b:NM_177819:exon13:c.T2688C:p.H896H	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9919577	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr15	71525818	12A2p6	cell line	sgMsh2	71525818	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	153	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon6:c.C392T:p.P131L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.99091837	1	0.9999945	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	71952562	12A2p6	cell line	sgMsh2	71952562	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	208	0	0	NA	exonic	Col22a1	synonymous SNV	Col22a1:NM_027174:exon13:c.A1632T:p.P544P	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.488414742	2	0.9484274	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	73126467	12A2p6	cell line	sgMsh2	73126467	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	259	0	0	NA	exonic	Ago2	synonymous SNV	Ago2:NM_153178:exon7:c.G861A:p.R287R	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.9986365	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr15	73303873	12A2p6	cell line	sgMsh2	73303873	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	166	0	0	NA	exonic	Ptk2	nonsynonymous SNV	"Ptk2:NM_001358046:exon10:c.T814A:p.L272M,Ptk2:NM_007982:exon10:c.T814A:p.L272M,Ptk2:NM_001358045:exon11:c.T946A:p.L316M"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9559891	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	73800224	12A2p6	cell line	sgMsh2	73800224	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	100	0	0	NA	exonic	Mroh5	nonsynonymous SNV	"Mroh5:NM_001033365:exon3:c.G64A:p.A22T,Mroh5:NM_001368162:exon3:c.G64A:p.A22T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9943016	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
M6_p20	chr15	74575898	12A2p6	cell line	sgMsh2	74575898	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	167	0	0	NA	exonic	Adgrb1	synonymous SNV	"Adgrb1:NM_001359759:exon24:c.G1443A:p.T481T,Adgrb1:NM_174991:exon24:c.G3372A:p.T1124T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999989	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr15	74751320	12A2p6	cell line	sgMsh2	74751320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	126	0	0	NA	exonic	Lynx1	nonsynonymous SNV	Lynx1:NM_011838:exon4:c.T262C:p.Y88H	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9984396	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	74839366	12A2p6	cell line	sgMsh2	74839366	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	185	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon3:c.A462C:p.K154N	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.526817	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	75757546	12A2p6	cell line	sgMsh2	75757546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	91	0	0	NA	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.T2471C:p.V824A	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	0.9666326	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	75839591	12A2p6	cell line	sgMsh2	75839591	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	119	0	0	NA	exonic	Zc3h3	synonymous SNV	Zc3h3:NM_172121:exon2:c.T1020C:p.G340G	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999443	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	86	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9991957	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76059103	12A2p6	cell line	sgMsh2	76059103	A	G	SNV	Mutect2;MuSe;Vardict	3	0.098	60	0	0	NA	exonic	Scrib	synonymous SNV	"Scrib:NM_001310542:exon21:c.T2826C:p.P942P,Scrib:NM_001310543:exon21:c.T2826C:p.P942P,Scrib:NM_134089:exon21:c.T2826C:p.P942P"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.460236968	2	0.6616355	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	76072306	12A2p6	cell line	sgMsh2	76072306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	0	0	NA	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon6:c.A350G:p.Y117C,Puf60:NM_001378985:exon6:c.A491G:p.Y164C,Puf60:NM_133691:exon6:c.A494G:p.Y165C,Puf60:NM_001378984:exon7:c.A542G:p.Y181C,Puf60:NM_001378986:exon7:c.A473G:p.Y158C,Puf60:NM_028364:exon7:c.A545G:p.Y182C,Puf60:NM_001356629:exon8:c.A524G:p.Y175C"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.826548024	1	0.9898981	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76072463	12A2p6	cell line	sgMsh2	76072463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon5:c.T274C:p.F92L,Puf60:NM_001378985:exon5:c.T415C:p.F139L,Puf60:NM_133691:exon5:c.T418C:p.F140L,Puf60:NM_001378984:exon6:c.T466C:p.F156L,Puf60:NM_001378986:exon6:c.T397C:p.F133L,Puf60:NM_028364:exon6:c.T469C:p.F157L,Puf60:NM_001356629:exon7:c.T448C:p.F150L"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.8408473	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76103687	12A2p6	cell line	sgMsh2	76103687	T	C	SNV	Mutect2;Vardict	2	0.043	447	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A8993G:p.Y2998C	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.201940711	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	121	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999526	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76108981	12A2p6	cell line	sgMsh2	76108981	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	69	0	0	NA	exonic	Eppk1	synonymous SNV	Eppk1:NM_144848:exon2:c.C3699A:p.G1233G	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.7229742	TGC	synonymous	NA	NA	NA	NA
M6_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	160	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.999998	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr15	76175643	12A2p6	cell line	sgMsh2	76175643	C	T	SNV	Mutect2;Vardict	2	0.125	54	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.G10246A:p.A3416T,Plec:NM_201385:exon32:c.G10132A:p.A3378T,Plec:NM_201386:exon32:c.G10093A:p.A3365T,Plec:NM_201387:exon32:c.G9688A:p.A3230T,Plec:NM_201388:exon32:c.G9688A:p.A3230T,Plec:NM_201389:exon32:c.G10588A:p.A3530T,Plec:NM_201390:exon32:c.G10063A:p.A3355T,Plec:NM_201391:exon32:c.G10159A:p.A3387T,Plec:NM_201392:exon32:c.G9688A:p.A3230T,Plec:NM_201393:exon32:c.G10180A:p.A3394T,Plec:NM_201394:exon32:c.G10159A:p.A3387T,Plec:NM_001163540:exon33:c.G10603A:p.A3535T,Plec:NM_001163549:exon33:c.G10174A:p.A3392T,Plec:NM_001163542:exon34:c.G10297A:p.A3433T,Plec:NM_001164203:exon34:c.G9688A:p.A3230T"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.8916553	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76177019	12A2p6	cell line	sgMsh2	76177019	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	160	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.A8870G:p.Y2957C,Plec:NM_201385:exon32:c.A8756G:p.Y2919C,Plec:NM_201386:exon32:c.A8717G:p.Y2906C,Plec:NM_201387:exon32:c.A8312G:p.Y2771C,Plec:NM_201388:exon32:c.A8312G:p.Y2771C,Plec:NM_201389:exon32:c.A9212G:p.Y3071C,Plec:NM_201390:exon32:c.A8687G:p.Y2896C,Plec:NM_201391:exon32:c.A8783G:p.Y2928C,Plec:NM_201392:exon32:c.A8312G:p.Y2771C,Plec:NM_201393:exon32:c.A8804G:p.Y2935C,Plec:NM_201394:exon32:c.A8783G:p.Y2928C,Plec:NM_001163540:exon33:c.A9227G:p.Y3076C,Plec:NM_001163549:exon33:c.A8798G:p.Y2933C,Plec:NM_001163542:exon34:c.A8921G:p.Y2974C,Plec:NM_001164203:exon34:c.A8312G:p.Y2771C"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5287318	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76268180	12A2p6	cell line	sgMsh2	76268180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	34	0	0	NA	exonic	Spatc1	synonymous SNV	Spatc1:NM_028852:exon1:c.A9G:p.L3L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9486092	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	76453682	12A2p6	cell line	sgMsh2	76453682	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	396	0	0	NA	exonic	Bop1	frameshift deletion	Bop1:NM_013481:exon14:c.1899delT:p.F633Lfs*12	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Vardict	2	0.091	81	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.427362899	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M6_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Vardict	2	0.073	287	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.342829578	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr15	76623407	12A2p6	cell line	sgMsh2	76623407	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	218	0	0	NA	exonic	Vps28	nonsynonymous SNV	"Vps28:NM_001305668:exon6:c.A168T:p.E56D,Vps28:NM_025842:exon6:c.A282T:p.E94D"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.380399943	3	0.9971219	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76702727	12A2p6	cell line	sgMsh2	76702727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	100	0	0	NA	exonic	Mfsd3	synonymous SNV	Mfsd3:NM_027122:exon2:c.T766C:p.L256L	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9582824	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr15	76708547	12A2p6	cell line	sgMsh2	76708547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	196	0	0	NA	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon6:c.T1222C:p.C408R	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9996405	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	197	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9998829	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	77404342	12A2p6	cell line	sgMsh2	77404342	T	C	SNV	Mutect2;MuSe;Vardict	3	0.167	193	0	0	NA	exonic	Apol9a	nonsynonymous SNV	"Apol9a:NM_001162883:exon3:c.A824G:p.K275R,Apol9a:NM_173786:exon3:c.A824G:p.K275R"	15qD3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9354636	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	77635321	12A2p6	cell line	sgMsh2	77635321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	207	0	0	NA	exonic	Apol11b	synonymous SNV	Apol11b:NM_001143686:exon4:c.T558C:p.S186S	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.962740597	1	0.9999995	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	290	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.272385144	3	3.52E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	78781167	12A2p6	cell line	sgMsh2	78781167	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	25	0	0	NA	exonic	Card10	synonymous SNV	Card10:NM_130859:exon14:c.T2085A:p.T695T	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.898846	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;MuSe;Vardict	3	0.125	81	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9684269	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr15	79001618	12A2p6	cell line	sgMsh2	79001618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	45	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001024716:exon9:c.A1359G:p.Q453Q,Triobp:NM_138579:exon19:c.A5382G:p.Q1794Q,Triobp:NM_001039156:exon20:c.A5520G:p.Q1840Q"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9782528	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	79089912	12A2p6	cell line	sgMsh2	79089912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	181	0	0	NA	exonic	Eif3l	nonsynonymous SNV	Eif3l:NM_145139:exon11:c.T1526C:p.L509P	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.460236968	2	7.99E-08	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	79129918	12A2p6	cell line	sgMsh2	79129918	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	40	0	0	NA	exonic	Micall1	nonsynonymous SNV	Micall1:NM_177461:exon10:c.A2012T:p.H671L	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.864118389	1	0.8440745	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	79535974	12A2p6	cell line	sgMsh2	79535974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	66	0	0	NA	exonic	Ddx17	nonsynonymous SNV	"Ddx17:NM_001040187:exon11:c.T1193C:p.V398A,Ddx17:NM_199079:exon11:c.T1193C:p.V398A,Ddx17:NM_199080:exon11:c.T1193C:p.V398A"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.09072996	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	79568665	12A2p6	cell line	sgMsh2	79568665	T	-	Deletion	Mutect2;Vardict	2	0.073	176	0	0	NA	exonic	Dmc1	frameshift deletion	"Dmc1:NM_001278226:exon11:c.762delA:p.E254Dfs*1,Dmc1:NM_010059:exon13:c.927delA:p.E309Dfs*1"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.342829578	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr15	80150497	12A2p6	cell line	sgMsh2	80150497	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	45	0	0	NA	exonic	Tab1	nonsynonymous SNV	Tab1:NM_025609:exon5:c.A482C:p.E161A	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9782528	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	80256356	12A2p6	cell line	sgMsh2	80256356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	114	0	0	NA	exonic	Atf4	nonsynonymous SNV	"Atf4:NM_009716:exon2:c.T58C:p.F20L,Atf4:NM_001287180:exon3:c.T58C:p.F20L"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	0.7092129	CTT	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr15	80256370	12A2p6	cell line	sgMsh2	80256370	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	104	0	0	NA	exonic	Atf4	synonymous SNV	"Atf4:NM_009716:exon2:c.T72G:p.G24G,Atf4:NM_001287180:exon3:c.T72G:p.G24G"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.7419138	GTT	synonymous	G	5	GGGGG	NA
M6_p20	chr15	80887857	12A2p6	cell line	sgMsh2	80887857	A	-	Deletion	Mutect2;Vardict	2	0.062	377	0	0	NA	exonic	Tnrc6b	frameshift deletion	"Tnrc6b:NM_177124:exon9:c.3238delA:p.M1081Wfs*4,Tnrc6b:NM_144812:exon12:c.3346delA:p.M1117Wfs*4"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.291170327	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr15	80956273	12A2p6	cell line	sgMsh2	80956273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	542	0	0	NA	exonic	Adsl	synonymous SNV	Adsl:NM_009634:exon4:c.T463C:p.L155L	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.9173656	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr15	80961395	12A2p6	cell line	sgMsh2	80961395	T	-	Deletion	Mutect2;Vardict	2	0.17	161	0	0	NA	exonic	Adsl	frameshift deletion	Adsl:NM_009634:exon6:c.694delT:p.F232Lfs*26	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.798370251	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	189	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	7.55E-09	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	186	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.427362899	3	0.8321964	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	81623449	12A2p6	cell line	sgMsh2	81623449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	300	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon11:c.T2058C:p.N686N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9999702	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	81946849	12A2p6	cell line	sgMsh2	81946849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	75	0	0	NA	exonic	Csdc2	synonymous SNV	Csdc2:NM_145473:exon2:c.T96C:p.S32S	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.7366196	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr15	82037539	12A2p6	cell line	sgMsh2	82037539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	94	0	0	NA	exonic	Xrcc6	synonymous SNV	Xrcc6:NM_010247:exon12:c.T1599C:p.N533N	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9414039	ATC	synonymous	NA	NA	NA	NA
M6_p20	chr15	82286498	12A2p6	cell line	sgMsh2	82286498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	126	0	0	NA	exonic	Septin3	nonsynonymous SNV	"Septin3:NM_001368647:exon6:c.A539G:p.D180G,Septin3:NM_001358836:exon7:c.A731G:p.D244G,Septin3:NM_001358837:exon7:c.A731G:p.D244G,Septin3:NM_001368642:exon7:c.A731G:p.D244G,Septin3:NM_001368643:exon7:c.A731G:p.D244G,Septin3:NM_001368644:exon7:c.A692G:p.D231G,Septin3:NM_001368645:exon7:c.A692G:p.D231G,Septin3:NM_001368646:exon7:c.A692G:p.D231G,Septin3:NM_011889:exon7:c.A692G:p.D231G,Septin3:NM_001368784:exon8:c.A2135G:p.D712G,Septin3:NM_001368785:exon8:c.A2135G:p.D712G"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.7572291	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	82558930	12A2p6	cell line	sgMsh2	82558930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	252	0	0	NA	exonic	Cyp2d12	nonsynonymous SNV	"Cyp2d12:NM_001355665:exon7:c.C1039T:p.L347F,Cyp2d12:NM_201360:exon8:c.C1192T:p.L398F"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9950551	CCT	nonsynonymous	TCC	9	TCCTCCTCC	NA
M6_p20	chr15	82617507	12A2p6	cell line	sgMsh2	82617507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	224	0	0	NA	exonic	Cyp2d34	synonymous SNV	Cyp2d34:NM_145474:exon5:c.T801C:p.P267P	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.9991289	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	82854799	12A2p6	cell line	sgMsh2	82854799	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	235	0	0	NA	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.C2450A:p.P817H,Tcf20:NM_013836:exon2:c.C2450A:p.P817H"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9833503	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	83496310	12A2p6	cell line	sgMsh2	83496310	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	69	0	0	NA	exonic	Ttll1	nonsynonymous SNV	"Ttll1:NM_001357953:exon9:c.A853C:p.I285L,Ttll1:NM_178869:exon9:c.A853C:p.I285L"	15qE1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.427362899	3	0.000565959	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	83879517	12A2p6	cell line	sgMsh2	83879517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	363	0	0	NA	exonic	Efcab6	nonsynonymous SNV	"Efcab6:NM_001161629:exon8:c.T1099C:p.F367L,Efcab6:NM_001161628:exon10:c.T1549C:p.F517L,Efcab6:NM_029946:exon27:c.T3613C:p.F1205L"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.488414742	2	0.9898559	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	522	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	1.51E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	84105443	12A2p6	cell line	sgMsh2	84105443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	51	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T157C:p.Y53H,Sult4a1:NM_013873:exon1:c.T157C:p.Y53H"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.878207276	1	0.9117927	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	180	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999996	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	84303416	12A2p6	cell line	sgMsh2	84303416	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	81	0	0	NA	exonic	Parvb	nonsynonymous SNV	Parvb:NM_133167:exon9:c.G724A:p.A242T	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	0.953219	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	84935251	12A2p6	cell line	sgMsh2	84935251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	159	0	0	NA	exonic	Nup50	nonsynonymous SNV	Nup50:NM_016714:exon5:c.A725G:p.K242R	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999978	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	262	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	0.999952	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr15	85230884	12A2p6	cell line	sgMsh2	85230884	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	111	0	0	NA	exonic	Fbln1	synonymous SNV	"Fbln1:NM_001347088:exon6:c.T636C:p.D212D,Fbln1:NM_010180:exon6:c.T636C:p.D212D"	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	8.54E-06	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	85393384	12A2p6	cell line	sgMsh2	85393384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	338	0	0	NA	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1051C:p.F351L	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.530681402	2	0.9999382	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	85393457	12A2p6	cell line	sgMsh2	85393457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	313	0	0	NA	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1124C:p.I375T	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.999984	ATC	nonsynonymous	TCTCA	12	TCTCATCTCATC	NA
M6_p20	chr15	85816500	12A2p6	cell line	sgMsh2	85816500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	296	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T5234C:p.V1745A	15qE2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9993697	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	88914616	12A2p6	cell line	sgMsh2	88914616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	53	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon12:c.C1321T:p.P441S,Ttll8:NM_172818:exon12:c.C1915T:p.P639S"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.8475252	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	64	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.7112656	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	89100895	12A2p6	cell line	sgMsh2	89100895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	80	0	0	NA	exonic	Tubgcp6	synonymous SNV	Tubgcp6:NM_001163319:exon23:c.T4989C:p.H1663H	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.8262662	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr15	89101277	12A2p6	cell line	sgMsh2	89101277	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	269	0	0	NA	exonic	Tubgcp6	stopgain	Tubgcp6:NM_001163319:exon22:c.G4680A:p.W1560X	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.864118389	1	0.9999703	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	400	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.9999747	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	116	0	0	NA	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9940251	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr15	89373970	12A2p6	cell line	sgMsh2	89373970	T	C	SNV	Mutect2;MuSe;Vardict	3	0.294	18	0	0	NA	exonic	Tymp	nonsynonymous SNV	Tymp:NM_138302:exon8:c.A1079G:p.H360R	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.8331388	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	251	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9999873	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	89543125	12A2p6	cell line	sgMsh2	89543125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	93	0	0	NA	exonic	Shank3	synonymous SNV	Shank3:NM_021423:exon19:c.T2382C:p.V794V	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.8727342	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	89569857	12A2p6	cell line	sgMsh2	89569857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	217	0	0	NA	exonic	Acr	synonymous SNV	"Acr:NM_001205049:exon3:c.T396C:p.H132H,Acr:NM_001277245:exon3:c.T228C:p.H76H,Acr:NM_001277246:exon3:c.T228C:p.H76H,Acr:NM_001277247:exon3:c.T270C:p.H90H,Acr:NM_013455:exon3:c.T396C:p.H132H"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9997369	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr15	93387807	12A2p6	cell line	sgMsh2	93387807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	124	0	0	NA	exonic	Zcrb1	nonsynonymous SNV	"Zcrb1:NM_001347097:exon6:c.A386G:p.E129G,Zcrb1:NM_026025:exon6:c.A386G:p.E129G"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	0.713181	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	93501215	12A2p6	cell line	sgMsh2	93501215	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.149	139	0	0	NA	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon8:c.A1731G:p.K577K,Prickle1:NM_001364846:exon8:c.A1731G:p.K577K"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.8492362	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr15	94291673	12A2p6	cell line	sgMsh2	94291673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	70	0	0	NA	exonic	Adamts20	nonsynonymous SNV	Adamts20:NM_177431:exon29:c.A4298G:p.K1433R	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.8918385	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	94338749	12A2p6	cell line	sgMsh2	94338749	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	114	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon17:c.T2389G:p.S797A,Adamts20:NM_177431:exon17:c.T2389G:p.S797A"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9881282	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	94353613	12A2p6	cell line	sgMsh2	94353613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	144	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon9:c.T1292C:p.L431P,Adamts20:NM_001164786:exon9:c.T1292C:p.L431P,Adamts20:NM_177431:exon9:c.T1292C:p.L431P"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.833513	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	94355362	12A2p6	cell line	sgMsh2	94355362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	92	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon8:c.T1129A:p.C377S,Adamts20:NM_001164786:exon8:c.T1129A:p.C377S,Adamts20:NM_177431:exon8:c.T1129A:p.C377S"	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9995049	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	94523487	12A2p6	cell line	sgMsh2	94523487	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	371	0	0	NA	exonic	Pus7l	synonymous SNV	Pus7l:NM_172437:exon9:c.C1941A:p.P647P	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9995615	GGG	synonymous	G	5	GGGGG	NA
M6_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	214	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.8119277	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr15	95094585	12A2p6	cell line	sgMsh2	95094585	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	330	0	0	NA	exonic	Tmem117	synonymous SNV	Tmem117:NM_178789:exon8:c.T1125C:p.V375V	15qE3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	96370823	12A2p6	cell line	sgMsh2	96370823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	284	0	0	NA	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon15:c.A2816G:p.Y939C	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9999983	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	96691324	12A2p6	cell line	sgMsh2	96691324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	235	0	0	NA	exonic	Slc38a2	nonsynonymous SNV	"Slc38a2:NM_001355633:exon13:c.A1051G:p.T351A,Slc38a2:NM_175121:exon14:c.A1288G:p.T430A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9999728	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	97245269	12A2p6	cell line	sgMsh2	97245269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	223	0	0	NA	exonic	Amigo2	nonsynonymous SNV	"Amigo2:NM_178114:exon1:c.A1271G:p.K424R,Amigo2:NM_001164563:exon2:c.A1271G:p.K424R,Amigo2:NM_001164602:exon2:c.A1271G:p.K424R"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9999997	TTT	nonsynonymous	TTTGCA	13	TTTGCATTTGCAT	NA
M6_p20	chr15	97245313	12A2p6	cell line	sgMsh2	97245313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	262	0	0	NA	exonic	Amigo2	synonymous SNV	"Amigo2:NM_178114:exon1:c.A1227T:p.I409I,Amigo2:NM_001164563:exon2:c.A1227T:p.I409I,Amigo2:NM_001164602:exon2:c.A1227T:p.I409I"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9999541	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr15	97719565	12A2p6	cell line	sgMsh2	97719565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	173	0	0	NA	exonic	Endou	nonsynonymous SNV	"Endou:NM_008902:exon4:c.A629G:p.N210S,Endou:NM_001168693:exon5:c.A503G:p.N168S"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.590713	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	97761220	12A2p6	cell line	sgMsh2	97761220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	53	0	0	NA	exonic	Rapgef3	stopgain	"Rapgef3:NM_001177810:exon5:c.C390A:p.C130X,Rapgef3:NM_001177811:exon5:c.C390A:p.C130X,Rapgef3:NM_001357630:exon5:c.C390A:p.C130X,Rapgef3:NM_144850:exon5:c.C390A:p.C130X"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.878207276	1	9.84E-06	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	203	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9989258	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	316	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.9770045	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	98722600	12A2p6	cell line	sgMsh2	98722600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	0	0	NA	exonic	Ccdc65	nonsynonymous SNV	Ccdc65:NM_153518:exon7:c.T1118C:p.V373A	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9894012	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	99037163	12A2p6	cell line	sgMsh2	99037163	G	A	SNV	Mutect2;Strelka2	2	0.189	25	0	0	NA	exonic	Tuba1c	synonymous SNV	Tuba1c:NM_009448:exon4:c.G504A:p.E168E	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.887599867	1	0.784765	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr15	99037169	12A2p6	cell line	sgMsh2	99037169	C	T	SNV	Mutect2;Strelka2	2	0.2	24	0	0	NA	exonic	Tuba1c	synonymous SNV	Tuba1c:NM_009448:exon4:c.C510T:p.S170S	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.8376615	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr15	99227932	12A2p6	cell line	sgMsh2	99227932	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	80	0	0	NA	exonic	Kcnh3	nonsynonymous SNV	Kcnh3:NM_010601:exon4:c.C469G:p.R157G	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	2	1	1	0.9986935	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	99510618	12A2p6	cell line	sgMsh2	99510618	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	89	0	0	NA	exonic	Faim2	synonymous SNV	"Faim2:NM_001038658:exon11:c.G732A:p.A244A,Faim2:NM_028224:exon11:c.G768A:p.A256A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9230426	CCG	synonymous	NA	NA	NA	NA
M6_p20	chr15	99524793	12A2p6	cell line	sgMsh2	99524793	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	46	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon2:c.A122G:p.E41G,Faim2:NM_028224:exon2:c.A122G:p.E41G"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.7325823	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	99628663	12A2p6	cell line	sgMsh2	99628663	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	156	0	0	NA	exonic	Racgap1	frameshift deletion	"Racgap1:NM_001253808:exon10:c.1018delC:p.L340Wfs*22,Racgap1:NM_001253809:exon10:c.1018delC:p.L340Wfs*22,Racgap1:NM_012025:exon11:c.1018delC:p.L340Wfs*22"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
M6_p20	chr15	99719240	12A2p6	cell line	sgMsh2	99719240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	239	0	0	NA	exonic	Gpd1	nonsynonymous SNV	Gpd1:NM_010271:exon3:c.T326C:p.L109S	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999201	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	99780525	12A2p6	cell line	sgMsh2	99780525	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	223	0	0	NA	exonic	Lima1	synonymous SNV	"Lima1:NM_023063:exon8:c.A1554G:p.A518A,Lima1:NM_001113545:exon11:c.A2034G:p.A678A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.8687777	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	99929889	12A2p6	cell line	sgMsh2	99929889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	97	0	0	NA	exonic	Fam186a	synonymous SNV	Fam186a:NM_028180:exon2:c.G54A:p.R18R	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996696	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr15	99929906	12A2p6	cell line	sgMsh2	99929906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	88	0	0	NA	exonic	Fam186a	nonsynonymous SNV	Fam186a:NM_028180:exon2:c.T37C:p.F13L	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.9993158	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	246	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.324044396	3	0.9999932	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	100312997	12A2p6	cell line	sgMsh2	100312997	G	-	Deletion	Mutect2;Vardict	2	0.129	161	0	0	NA	exonic	Mettl7a1	frameshift deletion	Mettl7a1:NM_027334:exon2:c.502delG:p.A169Lfs*35	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.605822132	NA	NA	AGG	frameshift	AGGG	8	AGGGAGGG	-1
M6_p20	chr15	100704244	12A2p6	cell line	sgMsh2	100704244	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.15	60	0	0	NA	exonic	Galnt6	synonymous SNV	"Galnt6:NM_001161767:exon5:c.G681A:p.R227R,Galnt6:NM_001161768:exon5:c.G681A:p.R227R,Galnt6:NM_172451:exon5:c.G681A:p.R227R"	15qF1	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.6365768	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr15	101568091	12A2p6	cell line	sgMsh2	101568091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	99	0	0	NA	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon7:c.A1238G:p.K413R	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9987978	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	101624375	12A2p6	cell line	sgMsh2	101624375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	528	0	0	NA	exonic	Gm5414	synonymous SNV	Gm5414:NM_001003670:exon8:c.A1416G:p.P472P	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.6862912	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr15	102156832	12A2p6	cell line	sgMsh2	102156832	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	367	0	0	NA	exonic	Soat2	stopgain	Soat2:NM_146064:exon6:c.T461A:p.L154X	15qF2	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	102236025	12A2p6	cell line	sgMsh2	102236025	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.249	14	0	0	NA	exonic	Rarg	synonymous SNV	"Rarg:NM_001042727:exon8:c.G1343A:p.X448X,Rarg:NM_011244:exon10:c.G1376A:p.X459X"	15qF3	chr15-3279130-102454328	5	3	2	0.93	4.367554902	NA	1	1	1	0.7804278	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr15	102522909	12A2p6	cell line	sgMsh2	102522909	T	A	SNV	Mutect2;Vardict	2	0.166	27	0	0	NA	exonic	Tarbp2	nonsynonymous SNV	"Tarbp2:NM_001253795:exon6:c.T526A:p.L176M,Tarbp2:NM_009319:exon8:c.T799A:p.L267M"	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	102936948	12A2p6	cell line	sgMsh2	102936948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	89	0	0	NA	exonic	Hoxc12	synonymous SNV	Hoxc12:NM_010463:exon1:c.A96G:p.S32S	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr15	102956556	12A2p6	cell line	sgMsh2	102956556	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.211	17	0	0	NA	exonic	Hoxc11	nonsynonymous SNV	Hoxc11:NM_001024842:exon2:c.T770C:p.I257T	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	102984095	12A2p6	cell line	sgMsh2	102984095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	68	0	0	NA	exonic	Hoxc9	nonsynonymous SNV	Hoxc9:NM_008272:exon3:c.A739C:p.M247L	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAT	nonsynonymous	GATGAA	12	GATGAAGATGAA	NA
M6_p20	chr15	102990879	12A2p6	cell line	sgMsh2	102990879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	49	0	0	NA	exonic	Hoxc8	stopgain	Hoxc8:NM_010466:exon1:c.A100T:p.R34X	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	103034935	12A2p6	cell line	sgMsh2	103034935	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.306	14	0	0	NA	exonic	Hoxc4	synonymous SNV	Hoxc4:NM_013553:exon1:c.T213C:p.S71S	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr15	103241519	12A2p6	cell line	sgMsh2	103241519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	370	0	0	NA	exonic	Hnrnpa1	nonsynonymous SNV	"Hnrnpa1:NM_001039129:exon3:c.A206G:p.D69G,Hnrnpa1:NM_010447:exon3:c.A206G:p.D69G"	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	282	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M6_p20	chr15	103562974	12A2p6	cell line	sgMsh2	103562974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	277	0	0	NA	exonic	Glycam1	synonymous SNV	Glycam1:NM_008134:exon4:c.A366G:p.T122T	15qF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Vardict	2	0.078	146	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Vardict	2	0.054	170	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	4288835	12A2p6	cell line	sgMsh2	4288835	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	184	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A3125C:p.E1042A,Adcy9:NM_001291910:exon12:c.A2414C:p.E805A"	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	55	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M6_p20	chr16	4486303	12A2p6	cell line	sgMsh2	4486303	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	124	0	0	NA	exonic	Srl	nonsynonymous SNV	"Srl:NM_001347162:exon5:c.T581A:p.I194N,Srl:NM_001361474:exon5:c.T584A:p.I195N,Srl:NM_175347:exon6:c.T1895A:p.I632N"	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	4616855	12A2p6	cell line	sgMsh2	4616855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	364	0	0	NA	exonic	Pam16	synonymous SNV	Pam16:NM_025571:exon4:c.G249A:p.V83V	16qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr16	4763827	12A2p6	cell line	sgMsh2	4763827	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	112	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon3:c.T182C:p.I61T,Hmox2:NM_001357050:exon3:c.T266C:p.I89T,Hmox2:NM_001378999:exon3:c.T239C:p.I80T,Hmox2:NM_010443:exon3:c.T182C:p.I61T"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.092684	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	4765812	12A2p6	cell line	sgMsh2	4765812	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	168	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon5:c.T743A:p.L248Q,Hmox2:NM_001357050:exon5:c.T827A:p.L276Q,Hmox2:NM_001378999:exon5:c.T800A:p.L267Q,Hmox2:NM_010443:exon5:c.T743A:p.L248Q"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.8357068	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.152	40	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.006088218	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	5233830	12A2p6	cell line	sgMsh2	5233830	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.153	40	0	0	NA	exonic	Alg1	nonsynonymous SNV	Alg1:NM_145362:exon1:c.T181G:p.F61V	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.005524333	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	7224509	12A2p6	cell line	sgMsh2	7224509	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	102	0	0	NA	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.A298G:p.S100G,Rbfox1:NM_001359728:exon2:c.A298G:p.S100G,Rbfox1:NM_001359729:exon2:c.A298G:p.S100G,Rbfox1:NM_183188:exon2:c.A286G:p.S96G,Rbfox1:NM_001359723:exon5:c.A226G:p.S76G,Rbfox1:NM_001359724:exon5:c.A226G:p.S76G,Rbfox1:NM_001359730:exon5:c.A226G:p.S76G,Rbfox1:NM_001359725:exon6:c.A226G:p.S76G,Rbfox1:NM_021477:exon6:c.A226G:p.S76G"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9488022	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	124	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.7608925	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	42	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5518094	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	8636088	12A2p6	cell line	sgMsh2	8636088	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.129	46	0	0	NA	exonic	Tmem186	nonsynonymous SNV	"Tmem186:NM_001362486:exon2:c.T17C:p.L6P,Tmem186:NM_025708:exon2:c.T308C:p.L103P"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.831754	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	8708904	12A2p6	cell line	sgMsh2	8708904	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	149	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon5:c.T569G:p.V190G	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9990419	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	142	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9538851	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	10361328	12A2p6	cell line	sgMsh2	10361328	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	202	0	0	NA	exonic	Tekt5	nonsynonymous SNV	Tekt5:NM_001291001:exon6:c.G1174T:p.A392S	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.9999781	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	10395212	12A2p6	cell line	sgMsh2	10395212	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	59	0	0	NA	exonic	Tekt5	nonsynonymous SNV	Tekt5:NM_001291001:exon1:c.T208C:p.S70P	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.8382709	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	10508578	12A2p6	cell line	sgMsh2	10508578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	110	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon8:c.A860G:p.Q287R,Ciita:NM_001243761:exon8:c.A623G:p.Q208R,Ciita:NM_001302618:exon8:c.A863G:p.Q288R,Ciita:NM_007575:exon8:c.A632G:p.Q211R,Ciita:NM_001302619:exon9:c.A560G:p.Q187R"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9688988	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	11072559	12A2p6	cell line	sgMsh2	11072559	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	110	0	0	NA	exonic	Snn	nonsynonymous SNV	Snn:NM_009223:exon2:c.G241A:p.A81T	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.8628865	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	11147315	12A2p6	cell line	sgMsh2	11147315	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	104	0	0	NA	exonic	Zc3h7a	synonymous SNV	Zc3h7a:NM_145931:exon16:c.C1953A:p.A651A	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5710327	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr16	11228191	12A2p6	cell line	sgMsh2	11228191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	60	0	0	NA	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon11:c.T1346C:p.M449T,Gspt1:NM_146066:exon11:c.T1349C:p.M450T"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8002551	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	11313991	12A2p6	cell line	sgMsh2	11313991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	479	0	0	NA	exonic	Tnfrsf17	synonymous SNV	Tnfrsf17:NM_011608:exon1:c.T39C:p.S13S	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9999998	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr16	13401031	12A2p6	cell line	sgMsh2	13401031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	366	0	0	NA	exonic	Mrtfb	nonsynonymous SNV	"Mrtfb:NM_153588:exon10:c.A1540C:p.T514P,Mrtfb:NM_001122667:exon12:c.A1573C:p.T525P"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	13626201	12A2p6	cell line	sgMsh2	13626201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	252	0	0	NA	exonic	Parn	nonsynonymous SNV	"Parn:NM_001358452:exon16:c.T1027C:p.Y343H,Parn:NM_001358453:exon16:c.T1018C:p.Y340H,Parn:NM_028761:exon17:c.T1084C:p.Y362H"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.8028146	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	120	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9884884	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	13791967	12A2p6	cell line	sgMsh2	13791967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	146	0	0	NA	exonic	Rrn3	nonsynonymous SNV	Rrn3:NM_001039521:exon8:c.T638G:p.V213G	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.765496182	1	0.7683424	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	13806610	12A2p6	cell line	sgMsh2	13806610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	193	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon14:c.T1305C:p.L435L	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9988229	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	142	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.9983753	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	287	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999594	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	14152629	12A2p6	cell line	sgMsh2	14152629	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	199	0	0	NA	exonic	Marf1	synonymous SNV	Marf1:NM_001081154:exon3:c.A225T:p.P75P	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9999454	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr16	14244891	12A2p6	cell line	sgMsh2	14244891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	214	0	0	NA	exonic	Myh11	nonsynonymous SNV	"Myh11:NM_001161775:exon8:c.A803G:p.K268R,Myh11:NM_013607:exon8:c.A803G:p.K268R"	16qA1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9999315	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	178	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9992934	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	15705232	12A2p6	cell line	sgMsh2	15705232	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	354	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon30:c.T3517C:p.C1173R	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.9607092	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	15862510	12A2p6	cell line	sgMsh2	15862510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	51	0	0	NA	exonic	Mzt2	synonymous SNV	"Mzt2:NM_029354:exon2:c.T210C:p.A70A,Mzt2:NM_001359003:exon3:c.T210C:p.A70A"	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9865062	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr16	16262686	12A2p6	cell line	sgMsh2	16262686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	181	0	0	NA	exonic	Pkp2	nonsynonymous SNV	Pkp2:NM_026163:exon9:c.C1835T:p.T612I	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.9287908	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	16303674	12A2p6	cell line	sgMsh2	16303674	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	69	0	0	NA	exonic	Yars2	nonsynonymous SNV	Yars2:NM_198246:exon1:c.T691A:p.Y231N	16qA2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.7969753	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	142	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9969538	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	105	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.9894492	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17212027	12A2p6	cell line	sgMsh2	17212027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	79	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.C3314T:p.S1105F	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9971707	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17278046	12A2p6	cell line	sgMsh2	17278046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	18	0	0	NA	exonic	Tmem191c	nonsynonymous SNV	Tmem191c:NM_177473:exon10:c.T779C:p.V260A	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.8331388	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17297275	12A2p6	cell line	sgMsh2	17297275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	139	0	0	NA	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon38:c.A4249G:p.T1417A,Pi4ka:NM_001373955:exon38:c.A4432G:p.T1478A"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	9.52E-06	GTT	nonsynonymous	GGTT	8	GGTTGGTT	NA
M6_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	380	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.9992963	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr16	17342352	12A2p6	cell line	sgMsh2	17342352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	75	0	0	NA	exonic	Serpind1	nonsynonymous SNV	"Serpind1:NM_001331047:exon4:c.T1112C:p.V371A,Serpind1:NM_008223:exon4:c.T1112C:p.V371A"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.8356237	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17469136	12A2p6	cell line	sgMsh2	17469136	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	273	0	0	NA	exonic	Crkl	synonymous SNV	Crkl:NM_007764:exon2:c.G555A:p.S185S	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	1.22E-09	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr16	17640995	12A2p6	cell line	sgMsh2	17640995	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	64	0	0	NA	exonic	Smpd4	synonymous SNV	"Smpd4:NM_001164610:exon15:c.T1494C:p.H498H,Smpd4:NM_001164611:exon15:c.T1491C:p.H497H,Smpd4:NM_001164609:exon16:c.T1533C:p.H511H,Smpd4:NM_029945:exon16:c.T1581C:p.H527H"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.9952465	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	17652754	12A2p6	cell line	sgMsh2	17652754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	116	0	0	NA	exonic	Med15	nonsynonymous SNV	"Med15:NM_001040683:exon16:c.T2068C:p.Y690H,Med15:NM_001285886:exon16:c.T1738C:p.Y580H,Med15:NM_001358404:exon16:c.T1975C:p.Y659H,Med15:NM_001285884:exon17:c.T2188C:p.Y730H,Med15:NM_033609:exon17:c.T2188C:p.Y730H"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9743638	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17849750	12A2p6	cell line	sgMsh2	17849750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	188	0	0	NA	exonic	Dgcr2	nonsynonymous SNV	"Dgcr2:NM_001109750:exon7:c.T835C:p.F279L,Dgcr2:NM_010048:exon7:c.T844C:p.F282L"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17898798	12A2p6	cell line	sgMsh2	17898798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	134	0	0	NA	exonic	Tssk2	nonsynonymous SNV	Tssk2:NM_009436:exon1:c.T64C:p.S22P	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	7.70E-07	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	17911179	12A2p6	cell line	sgMsh2	17911179	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.5	8	0	0	NA	exonic	Ess2	nonsynonymous SNV	"Ess2:NM_001081633:exon1:c.G127A:p.E43K,Ess2:NM_022408:exon1:c.G127A:p.E43K"	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.6717552	TCA	nonsynonymous	TCT	8	TCTTCTTC	NA
M6_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	105	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998271	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	19407757	12A2p6	cell line	sgMsh2	19407757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	213	0	0	NA	exonic	Olfr165	synonymous SNV	Olfr165:NM_146466:exon1:c.T261C:p.L87L	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.6297764	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	19487703	12A2p6	cell line	sgMsh2	19487703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	227	0	0	NA	exonic	Olfr166	synonymous SNV	Olfr166:NM_147068:exon1:c.T864C:p.I288I	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9986681	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr16	19515290	12A2p6	cell line	sgMsh2	19515290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	148	0	0	NA	exonic	Olfr167	synonymous SNV	Olfr167:NM_146935:exon1:c.A345G:p.A115A	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.7675532	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	19947087	12A2p6	cell line	sgMsh2	19947087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	298	0	0	NA	exonic	Klhl6	stopgain	Klhl6:NM_183390:exon7:c.T1764A:p.C588X	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.9592107	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	20398878	12A2p6	cell line	sgMsh2	20398878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	309	0	0	NA	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon8:c.T1082C:p.V361A	16qA3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.9988088	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	20738726	12A2p6	cell line	sgMsh2	20738726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.154	37	0	0	NA	exonic	Chrd	synonymous SNV	"Chrd:NM_001278041:exon16:c.T2160C:p.P720P,Chrd:NM_001354996:exon16:c.T2094C:p.P698P,Chrd:NM_009893:exon16:c.T2094C:p.P698P,Chrd:NM_001354995:exon17:c.T657C:p.P219P"	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.006672328	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	47	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.981443	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	21937998	12A2p6	cell line	sgMsh2	21937998	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	35	0	0	NA	exonic	Tmem41a	nonsynonymous SNV	Tmem41a:NM_025693:exon3:c.A370C:p.S124R	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.5937563	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	122	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.8171408	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	23118058	12A2p6	cell line	sgMsh2	23118058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	282	0	0	NA	exonic	Rfc4	nonsynonymous SNV	Rfc4:NM_145480:exon5:c.A296G:p.E99G	16qB1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9938324	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	26676828	12A2p6	cell line	sgMsh2	26676828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	113	0	0	NA	exonic	Il1rap	nonsynonymous SNV	"Il1rap:NM_001159317:exon3:c.C184A:p.H62N,Il1rap:NM_001159318:exon3:c.C184A:p.H62N,Il1rap:NM_008364:exon3:c.C184A:p.H62N,Il1rap:NM_134103:exon3:c.C184A:p.H62N"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9271314	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	26676856	12A2p6	cell line	sgMsh2	26676856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	105	0	0	NA	exonic	Il1rap	nonsynonymous SNV	"Il1rap:NM_001159317:exon3:c.A212G:p.Y71C,Il1rap:NM_001159318:exon3:c.A212G:p.Y71C,Il1rap:NM_008364:exon3:c.A212G:p.Y71C,Il1rap:NM_134103:exon3:c.A212G:p.Y71C"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.99028	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	27444556	12A2p6	cell line	sgMsh2	27444556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	349	0	0	NA	exonic	Ccdc50	synonymous SNV	"Ccdc50:NM_001025615:exon9:c.T759C:p.P253P,Ccdc50:NM_026202:exon10:c.T804C:p.P268P,Ccdc50:NM_001289436:exon11:c.T354C:p.P118P"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.9543448	CTA	synonymous	ACC	12	ACCACCACCACC	NA
M6_p20	chr16	28752846	12A2p6	cell line	sgMsh2	28752846	T	-	Deletion	Mutect2;Vardict	2	0.142	63	0	0	NA	exonic	Fgf12	frameshift deletion	Fgf12:NM_010199:exon2:c.1delA:p.M1Wfs*7	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.666873974	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr16	28827838	12A2p6	cell line	sgMsh2	28827838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	114	0	0	NA	exonic	Mb21d2	synonymous SNV	Mb21d2:NM_177718:exon2:c.A1383G:p.L461L	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.993441	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr16	30260866	12A2p6	cell line	sgMsh2	30260866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	53	0	0	NA	exonic	Cpn2	nonsynonymous SNV	Cpn2:NM_027904:exon2:c.T16C:p.W6R	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.6690434	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	30272931	12A2p6	cell line	sgMsh2	30272931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	338	0	0	NA	exonic	Lrrc15	nonsynonymous SNV	Lrrc15:NM_028973:exon2:c.T1589C:p.M530T	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	1.72E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	31684199	12A2p6	cell line	sgMsh2	31684199	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	108	0	0	NA	exonic	Dlg1	nonsynonymous SNV	"Dlg1:NM_001252433:exon4:c.C223A:p.P75T,Dlg1:NM_001252434:exon4:c.C223A:p.P75T,Dlg1:NM_001252435:exon4:c.C223A:p.P75T,Dlg1:NM_001357282:exon4:c.C223A:p.P75T,Dlg1:NM_007862:exon4:c.C223A:p.P75T"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.953348005	1	0.9993374	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32084622	12A2p6	cell line	sgMsh2	32084622	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	143	0	0	NA	exonic	Pigx	nonsynonymous SNV	"Pigx:NM_001111025:exon6:c.T620C:p.L207P,Pigx:NM_024464:exon6:c.T626C:p.L209P"	16qB2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9946079	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32291951	12A2p6	cell line	sgMsh2	32291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	249	0	0	NA	exonic	Rnf168	synonymous SNV	Rnf168:NM_027355:exon5:c.T735C:p.A245A	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	4.13E-08	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr16	32751782	12A2p6	cell line	sgMsh2	32751782	A	G	SNV	Mutect2;Vardict	2	0.019	444	0	0	NA	exonic	Muc4	synonymous SNV	Muc4:NM_080457:exon2:c.A1659G:p.T553T	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.089229616	3	1	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr16	32756322	12A2p6	cell line	sgMsh2	32756322	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	405	0	0	NA	exonic	Muc4	synonymous SNV	Muc4:NM_080457:exon4:c.A6195T:p.S2065S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.211333302	3	1	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	140	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999898	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32776913	12A2p6	cell line	sgMsh2	32776913	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	77	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon22:c.A9626T:p.N3209I	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.683422	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	311	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.8838318	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32844553	12A2p6	cell line	sgMsh2	32844553	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	200	0	0	NA	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon6:c.A727C:p.S243R,Rubcn:NM_001374776:exon6:c.A544C:p.S182R,Rubcn:NM_172615:exon6:c.A727C:p.S243R"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9959986	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32959460	12A2p6	cell line	sgMsh2	32959460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	116	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon5:c.T706C:p.C236R,Lrch3:NM_001310672:exon5:c.T706C:p.C236R,Lrch3:NM_001310673:exon5:c.T706C:p.C236R,Lrch3:NM_001310674:exon5:c.T706C:p.C236R"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.8824346	TTG	nonsynonymous	TGTT	8	TGTTTGTT	NA
M6_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	183	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.5671088	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	32975787	12A2p6	cell line	sgMsh2	32975787	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	119	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon8:c.G1040A:p.R347K,Lrch3:NM_001310672:exon8:c.G1040A:p.R347K,Lrch3:NM_001310673:exon8:c.G1040A:p.R347K,Lrch3:NM_001310674:exon8:c.G1040A:p.R347K"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9936659	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	33975874	12A2p6	cell line	sgMsh2	33975874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	146	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon60:c.T8591C:p.L2864P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.8045374	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	33977543	12A2p6	cell line	sgMsh2	33977543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	154	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon59:c.G8368A:p.A2790T	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9683058	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	86	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9720961	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	34723880	12A2p6	cell line	sgMsh2	34723880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	43	0	0	NA	exonic	Ccdc14	synonymous SNV	Ccdc14:NM_172824:exon13:c.T2751C:p.D917D	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.8802344	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	35836111	12A2p6	cell line	sgMsh2	35836111	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	151	0	0	NA	exonic	Parp14	frameshift deletion	Parp14:NM_001039530:exon16:c.5044delA:p.S1682Vfs*8	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.915777641	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	189	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	35863528	12A2p6	cell line	sgMsh2	35863528	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	127	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon4:c.T427A:p.C143S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.651604	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	220	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9701826	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr16	36615278	12A2p6	cell line	sgMsh2	36615278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	exonic	Cd86	nonsynonymous SNV	Cd86:NM_019388:exon5:c.T776C:p.L259P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5232918	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	36752284	12A2p6	cell line	sgMsh2	36752284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	299	0	0	NA	exonic	Slc15a2	synonymous SNV	Slc15a2:NM_021301:exon21:c.T2034C:p.S678S	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9999642	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr16	36919605	12A2p6	cell line	sgMsh2	36919605	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	138	0	0	NA	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon14:c.G8428T:p.V2810L	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9949235	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	37029420	12A2p6	cell line	sgMsh2	37029420	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	345	0	0	NA	exonic	Polq	frameshift deletion	Polq:NM_029977:exon7:c.1035delA:p.K347Nfs*5	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.850029502	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr16	37139968	12A2p6	cell line	sgMsh2	37139968	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.202	111	0	0	NA	exonic	Stxbp5l	frameshift insertion	"Stxbp5l:NM_001114611:exon21:c.2288dupA:p.N763Kfs*1,Stxbp5l:NM_001114612:exon22:c.2459dupA:p.N820Kfs*1,Stxbp5l:NM_001114613:exon22:c.2360dupA:p.N787Kfs*1,Stxbp5l:NM_172440:exon23:c.2531dupA:p.N844Kfs*1"	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.94865171	NA	NA	CAT	frameshift	T	5	TTTTT	1
M6_p20	chr16	37818952	12A2p6	cell line	sgMsh2	37818952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	196	0	0	NA	exonic	Fstl1	nonsynonymous SNV	Fstl1:NM_008047:exon4:c.T211C:p.Y71H	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9641728	CTA	nonsynonymous	ACCT	8	ACCTACCT	NA
M6_p20	chr16	38005795	12A2p6	cell line	sgMsh2	38005795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	24	0	0	NA	exonic	Gpr156	synonymous SNV	Gpr156:NM_153394:exon10:c.T2373C:p.D791D	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.8911772	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	27	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9127268	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	38332185	12A2p6	cell line	sgMsh2	38332185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T662C:p.L221P	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.662177679	2	0.9854133	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	38332237	12A2p6	cell line	sgMsh2	38332237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	226	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T610C:p.Y204H	16qB3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9986278	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	43982105	12A2p6	cell line	sgMsh2	43982105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	177	0	0	NA	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon13:c.T1327C:p.F443L,Gramd1c:NM_153528:exon13:c.T1327C:p.F443L,Gramd1c:NM_001359085:exon17:c.T1858C:p.F620L"	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9992371	AAG	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	263	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	1.48E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	44419226	12A2p6	cell line	sgMsh2	44419226	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	160	0	0	NA	exonic	Cfap44	synonymous SNV	Cfap44:NM_001033247:exon14:c.G1635A:p.R545R	16qB4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.9990352	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr16	45144199	12A2p6	cell line	sgMsh2	45144199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	365	0	0	NA	exonic	Slc35a5	nonsynonymous SNV	"Slc35a5:NM_001356453:exon6:c.A667G:p.T223A,Slc35a5:NM_028756:exon6:c.A670G:p.T224A"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9972292	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	45183749	12A2p6	cell line	sgMsh2	45183749	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	364	0	0	NA	exonic	Atg3	nonsynonymous SNV	"Atg3:NM_001356366:exon9:c.T473A:p.V158E,Atg3:NM_026402:exon10:c.T734A:p.V245E"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.8412225	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	45547695	12A2p6	cell line	sgMsh2	45547695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	393	0	0	NA	exonic	Slc9c1	nonsynonymous SNV	Slc9c1:NM_198106:exon6:c.T646A:p.F216I	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	48994304	12A2p6	cell line	sgMsh2	48994304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	79	0	0	NA	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon1:c.C27T:p.S9S	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9499788	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	391	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	49001667	12A2p6	cell line	sgMsh2	49001667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	140	0	0	NA	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon6:c.A657G:p.L219L	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9998519	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	49018524	12A2p6	cell line	sgMsh2	49018524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	167	0	0	NA	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon21:c.A2703G:p.E901E	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.6520451	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	52	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9875423	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	50224494	12A2p6	cell line	sgMsh2	50224494	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	206	0	0	NA	exonic	Bbx	nonsynonymous SNV	"Bbx:NM_027444:exon11:c.A1703C:p.E568A,Bbx:NM_001347240:exon12:c.A1703C:p.E568A"	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.8967535	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	168	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9978389	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	100	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9997408	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	57214237	12A2p6	cell line	sgMsh2	57214237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	175	0	0	NA	exonic	Tbc1d23	synonymous SNV	"Tbc1d23:NM_001358433:exon3:c.T198C:p.S66S,Tbc1d23:NM_026254:exon3:c.T198C:p.S66S"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9969946	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr16	57569952	12A2p6	cell line	sgMsh2	57569952	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	52	0	0	NA	exonic	Filip1l	nonsynonymous SNV	"Filip1l:NM_001177871:exon2:c.A188T:p.H63L,Filip1l:NM_001040397:exon5:c.A902T:p.H301L"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9866271	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	57570538	12A2p6	cell line	sgMsh2	57570538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	137	0	0	NA	exonic	Filip1l	synonymous SNV	"Filip1l:NM_001177871:exon2:c.G774T:p.V258V,Filip1l:NM_001040397:exon5:c.G1488T:p.V496V"	16qC1.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.7175975	TGA	synonymous	NA	NA	NA	NA
M6_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	320	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9959417	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Vardict	2	0.085	176	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.399185125	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	354	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9982352	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	59098943	12A2p6	cell line	sgMsh2	59098943	T	A	SNV	Mutect2;Vardict	2	0.062	188	0	0	NA	exonic	Olfr192	synonymous SNV	Olfr192:NM_207549:exon1:c.A48T:p.T16T	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999872	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr16	59167394	12A2p6	cell line	sgMsh2	59167394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	160	0	0	NA	exonic	Olfr196	synonymous SNV	Olfr196:NM_146779:exon1:c.T748C:p.L250L	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999975	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr16	59362061	12A2p6	cell line	sgMsh2	59362061	A	G	SNV	Mutect2;MuSe;Vardict	3	0.084	818	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.T156C:p.P52P,Olfr209:NM_207551:exon1:c.T156C:p.P52P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	4.56E-09	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr16	59530197	12A2p6	cell line	sgMsh2	59530197	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.134	59	0	0	NA	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon14:c.C7821T:p.G2607G	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.8662729	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr16	63773391	12A2p6	cell line	sgMsh2	63773391	-	A	Insertion	Mutect2;Vardict	2	0.129	102	0	0	NA	exonic	Epha3	frameshift insertion	"Epha3:NM_001362452:exon3:c.332dupT:p.L111Ffs*10,Epha3:NM_010140:exon3:c.332dupT:p.L111Ffs*10"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.605822132	NA	NA	CCA	frameshift	NA	NA	NA	1
M6_p20	chr16	64786149	12A2p6	cell line	sgMsh2	64786149	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	199	0	0	NA	exonic	Zfp654	frameshift deletion	Zfp654:NM_001347245:exon8:c.1689delA:p.G564Afs*5	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr16	64926197	12A2p6	cell line	sgMsh2	64926197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	213	0	0	NA	exonic	Htr1f	nonsynonymous SNV	Htr1f:NM_008310:exon3:c.C731T:p.S244F	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.999354	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	66812809	12A2p6	cell line	sgMsh2	66812809	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	121	0	0	NA	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon4:c.G423T:p.L141L,Cadm2:NM_001347247:exon4:c.G423T:p.L141L,Cadm2:NM_178721:exon5:c.G450T:p.L150L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999526	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr16	66882797	12A2p6	cell line	sgMsh2	66882797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	268	0	0	NA	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon2:c.T147C:p.N49N,Cadm2:NM_001347247:exon2:c.T147C:p.N49N,Cadm2:NM_178721:exon3:c.T174C:p.N58N"	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9996676	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr16	69857128	12A2p6	cell line	sgMsh2	69857128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	60	0	0	NA	exonic	Speer2	synonymous SNV	Speer2:NM_173069:exon6:c.T732C:p.H244H	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9934412	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr16	70483864	12A2p6	cell line	sgMsh2	70483864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	394	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon9:c.A1152C:p.Q384H	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	1.47E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	448	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.822651	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	70492004	12A2p6	cell line	sgMsh2	70492004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	505	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.A1406G:p.Y469C	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	1.73E-08	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	70495379	12A2p6	cell line	sgMsh2	70495379	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	220	0	0	NA	exonic	Gbe1	frameshift deletion	Gbe1:NM_028803:exon12:c.1598delA:p.G534Afs*35	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.662177679	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr16	70527167	12A2p6	cell line	sgMsh2	70527167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	132	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon13:c.A1669G:p.N557D	16qC2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9880909	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	72972373	12A2p6	cell line	sgMsh2	72972373	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.126	51	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon11:c.T1679C:p.F560S	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	0.09072683	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	72979914	12A2p6	cell line	sgMsh2	72979914	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	58	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon15:c.C2273A:p.T758N	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.821851729	1	0.8326376	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	75596522	12A2p6	cell line	sgMsh2	75596522	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	76	0	0	NA	exonic	Rbm11	synonymous SNV	Rbm11:NM_198302:exon2:c.A105G:p.P35P	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.563666	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr16	77114936	12A2p6	cell line	sgMsh2	77114936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	168	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2852C:p.V951A	16qC3.1	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.9576038	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	79062263	12A2p6	cell line	sgMsh2	79062263	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	232	0	0	NA	exonic	Tmprss15	nonsynonymous SNV	"Tmprss15:NM_178855:exon8:c.G628T:p.V210F,Tmprss15:NM_008941:exon9:c.G673T:p.V225F"	16qC3.2	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9936551	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	81595208	12A2p6	cell line	sgMsh2	81595208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	204	0	0	NA	exonic	Ncam2	nonsynonymous SNV	Ncam2:NM_010954:exon16:c.T2079A:p.D693E	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9435794	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	85120555	12A2p6	cell line	sgMsh2	85120555	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	90	0	0	NA	exonic	App	nonsynonymous SNV	"App:NM_001198823:exon2:c.A200G:p.E67G,App:NM_001198824:exon2:c.A200G:p.E67G,App:NM_001198825:exon2:c.A200G:p.E67G,App:NM_001198826:exon2:c.A200G:p.E67G,App:NM_007471:exon2:c.A200G:p.E67G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.502503628	2	0.8916917	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	129	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.6140276	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	87912833	12A2p6	cell line	sgMsh2	87912833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	exonic	Grik1	nonsynonymous SNV	Grik1:NM_001346964:exon16:c.A2599G:p.T867A	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.8590715	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M6_p20	chr16	88751235	12A2p6	cell line	sgMsh2	88751235	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	70	0	0	NA	exonic	Krtap13	nonsynonymous SNV	Krtap13:NM_010671:exon1:c.A364G:p.T122A	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9176097	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	88874220	12A2p6	cell line	sgMsh2	88874220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	64	0	0	NA	exonic	Krtap19-2	synonymous SNV	Krtap19-2:NM_130870:exon1:c.C36A:p.G12G	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.963316	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr16	88884969	12A2p6	cell line	sgMsh2	88884969	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.199	53	0	0	NA	exonic	Krtap19-4	nonsynonymous SNV	Krtap19-4:NM_130873:exon1:c.G98A:p.R33H	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.966483	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	88896399	12A2p6	cell line	sgMsh2	88896399	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	46	0	0	NA	exonic	Krtap19-5	synonymous SNV	Krtap19-5:NM_010676:exon1:c.C24T:p.Y8Y	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9660212	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr16	89570793	12A2p6	cell line	sgMsh2	89570793	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	108	0	0	NA	exonic	Krtap11-1	nonsynonymous SNV	Krtap11-1:NM_001113406:exon1:c.C337T:p.P113S	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.8913376	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	89833118	12A2p6	cell line	sgMsh2	89833118	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	38	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon15:c.T2779C:p.Y927H,Tiam1:NM_009384:exon15:c.T2779C:p.Y927H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.563925	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	193	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999999	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr16	91056105	12A2p6	cell line	sgMsh2	91056105	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	213	0	0	NA	exonic	4932438H23Rik	nonsynonymous SNV	"4932438H23Rik:NM_001163695:exon2:c.A88G:p.T30A,4932438H23Rik:NM_028905:exon3:c.A88G:p.T30A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9996504	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	212	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9759839	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M6_p20	chr16	91501628	12A2p6	cell line	sgMsh2	91501628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	151	0	0	NA	exonic	Ifnar1	nonsynonymous SNV	Ifnar1:NM_010508:exon9:c.A1132G:p.M378V	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9425482	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	91636125	12A2p6	cell line	sgMsh2	91636125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	120	0	0	NA	exonic	Gart	nonsynonymous SNV	"Gart:NM_001357351:exon10:c.T935C:p.V312A,Gart:NM_010256:exon10:c.T935C:p.V312A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9792502	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	94432031	12A2p6	cell line	sgMsh2	94432031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	171	0	0	NA	exonic	Ttc3	nonsynonymous SNV	Ttc3:NM_009441:exon28:c.A2984C:p.D995A	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999992	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	94502227	12A2p6	cell line	sgMsh2	94502227	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	62	0	0	NA	exonic	Vps26c	synonymous SNV	Vps26c:NM_007834:exon6:c.T513C:p.A171A	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.994416	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.606	110	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	2	1	1	0.9998846	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	95295629	12A2p6	cell line	sgMsh2	95295629	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	195	0	0	NA	exonic	Kcnj15	nonsynonymous SNV	"Kcnj15:NM_001271695:exon3:c.A28C:p.S10R,Kcnj15:NM_001039056:exon4:c.A28C:p.S10R,Kcnj15:NM_001039057:exon4:c.A109C:p.S37R,Kcnj15:NM_001271691:exon4:c.A28C:p.S10R,Kcnj15:NM_001271692:exon4:c.A109C:p.S37R,Kcnj15:NM_001271693:exon4:c.A28C:p.S10R,Kcnj15:NM_001271694:exon4:c.A109C:p.S37R,Kcnj15:NM_001271687:exon5:c.A109C:p.S37R,Kcnj15:NM_001271689:exon5:c.A28C:p.S10R,Kcnj15:NM_001271690:exon5:c.A109C:p.S37R,Kcnj15:NM_019664:exon5:c.A28C:p.S10R"	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9886838	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Vardict	2	0.165	138	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.93	4.367554902	NA	1	0.774888773	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr17	3453370	12A2p6	cell line	sgMsh2	3453370	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	528	0	0	NA	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon13:c.T2821G:p.F941V,Tiam2:NM_011878:exon13:c.T2821G:p.F941V"	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.78897766	1	0.9995948	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	3557673	12A2p6	cell line	sgMsh2	3557673	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	40	0	0	NA	exonic	Tfb1m	frameshift deletion	Tfb1m:NM_146074:exon1:c.41delC:p.P14Rfs*16	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M6_p20	chr17	5291024	12A2p6	cell line	sgMsh2	5291024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	96	0	0	NA	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon8:c.A2446G:p.M816V	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9996418	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	6029822	12A2p6	cell line	sgMsh2	6029822	C	-	Deletion	Strelka2;Vardict	2	0.1754	57	0	0	NA	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.823730247	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
M6_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;MuSe;Vardict	3	0.069	532	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.324044396	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	7228018	12A2p6	cell line	sgMsh2	7228018	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	271	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon2:c.T205C:p.S69P	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	3	0.9733722	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	7255928	12A2p6	cell line	sgMsh2	7255928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	160	0	0	NA	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon8:c.T702C:p.R234R	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	0.999323	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr17	7271596	12A2p6	cell line	sgMsh2	7271596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	350	0	0	NA	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon11:c.T912C:p.A304A	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.774888773	1	0.9753986	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr17	7771851	12A2p6	cell line	sgMsh2	7771851	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	59	0	0	NA	exonic	Fndc1	synonymous SNV	Fndc1:NM_001081416:exon9:c.G3159A:p.S1053S	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.587036949	2	0.9130463	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr17	8169062	12A2p6	cell line	sgMsh2	8169062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	130	0	0	NA	exonic	Cep43	synonymous SNV	"Cep43:NM_001197046:exon3:c.T184C:p.L62L,Cep43:NM_201230:exon3:c.T184C:p.L62L"	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999771	CTT	synonymous	A	5	AAAAA	NA
M6_p20	chr17	12210663	12A2p6	cell line	sgMsh2	12210663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	148	0	0	NA	exonic	Agpat4	nonsynonymous SNV	Agpat4:NM_026644:exon5:c.C535T:p.R179W	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999947	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	12892818	12A2p6	cell line	sgMsh2	12892818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	101	0	0	NA	exonic	Pnldc1	stopgain	Pnldc1:NM_001034866:exon13:c.T1001A:p.L334X	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.756103591	1	0.6413653	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	13225659	12A2p6	cell line	sgMsh2	13225659	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	864	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.A122C:p.K41T	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.183155528	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	13225746	12A2p6	cell line	sgMsh2	13225746	T	C	SNV	Mutect2;MuSe;Vardict	3	0.068	1514	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T209C:p.M70T	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Vardict	2	0.03	1124	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.140888868	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;MuSe;Vardict	3	0.041	1277	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.192548119	3	1	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr17	14368972	12A2p6	cell line	sgMsh2	14368972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	172	0	0	NA	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon8:c.T702C:p.N234N	17qA2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.403881421	3	0.950313	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr17	15368710	12A2p6	cell line	sgMsh2	15368710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	63	0	0	NA	exonic	Dll1	nonsynonymous SNV	"Dll1:NM_007865:exon9:c.T1702C:p.C568R,Dll1:NM_001379042:exon10:c.T1702C:p.C568R"	17qA2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.915777641	1	0.9732013	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	340	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.460236968	2	0.673773	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	17892838	12A2p6	cell line	sgMsh2	17892838	T	C	SNV	Mutect2;MuSe;Vardict	3	0.124	307	0	0	NA	exonic	Fpr2	nonsynonymous SNV	Fpr2:NM_008039:exon2:c.T95C:p.V32A	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Vardict	2	0.089	232	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr17	18277423	12A2p6	cell line	sgMsh2	18277423	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	281	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon1:c.A86T:p.D29V	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.727925817	2	0.7629404	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	18304157	12A2p6	cell line	sgMsh2	18304157	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	371	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon2:c.T412C:p.Y138H	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.9932293	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	522	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.347525874	3	1.51E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19066365	12A2p6	cell line	sgMsh2	19066365	A	G	SNV	Mutect2;MuSe;Vardict	3	0.059	661	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.A1124G:p.Q375R	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.27708144	3	1	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19521428	12A2p6	cell line	sgMsh2	19521428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	340	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon2:c.A401G:p.K134R	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.760799886	1	0.8880605	AAG	nonsynonymous	GAAA	9	GAAAGAAAG	NA
M6_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	397	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.366311056	3	0.9999983	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19589629	12A2p6	cell line	sgMsh2	19589629	G	T	SNV	Mutect2;MuSe;Vardict	3	0.082	476	0	0	NA	exonic	Vmn2r101	stopgain	Vmn2r101:NM_001104563:exon3:c.G676T:p.G226X	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.385096239	3	0.999997	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19611835	12A2p6	cell line	sgMsh2	19611835	A	G	SNV	Mutect2;Vardict	2	0.034	992	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon6:c.A2092G:p.I698V	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.15967405	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	980	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.324044396	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19773523	12A2p6	cell line	sgMsh2	19773523	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	313	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon1:c.C161A:p.T54N	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.7298466	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	594	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.300562918	3	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr17	19812337	12A2p6	cell line	sgMsh2	19812337	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	383	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.C2372A:p.T791N	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	19812411	12A2p6	cell line	sgMsh2	19812411	A	-	Deletion	Mutect2;Vardict	2	0.137	223	0	0	NA	exonic	Vmn2r103	frameshift deletion	Vmn2r103:NM_001104565:exon6:c.2446delA:p.S816Afs*1	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.643392496	NA	NA	CAG	frameshift	NA	NA	NA	-1
M6_p20	chr17	19812523	12A2p6	cell line	sgMsh2	19812523	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.198	47	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A2558G:p.Y853C	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.929866528	1	0.9493118	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	274	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.389792534	3	0.9985769	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	293	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.450844377	3	0.5789247	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	290	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.422666603	3	0.9672451	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20502835	12A2p6	cell line	sgMsh2	20502835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	237	0	0	NA	exonic	Vmn1r225	synonymous SNV	Vmn1r225:NM_134194:exon1:c.A537G:p.T179T	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.892296163	1	0.9999877	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	20540614	12A2p6	cell line	sgMsh2	20540614	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	284	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.C2480A:p.P827H	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.516592515	2	0.998823	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20584215	12A2p6	cell line	sgMsh2	20584215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	247	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon2:c.A442G:p.T148A	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	2.76E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	335	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.35222217	3	0.9999975	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	247	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.295866622	3	0.9999995	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	21262216	12A2p6	cell line	sgMsh2	21262216	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	368	0	0	NA	exonic	Vmn1r235	nonsynonymous SNV	Vmn1r235:NM_134199:exon2:c.A802T:p.I268L	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.493111037	2	0.99496	TAT	nonsynonymous	TTATG	14	TTATGTTATGTTAT	NA
M6_p20	chr17	21287172	12A2p6	cell line	sgMsh2	21287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	558	0	0	NA	exonic	Vmn1r236	nonsynonymous SNV	Vmn1r236:NM_134201:exon1:c.A551G:p.Y184C	17qA3.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.760799886	1	0.9642125	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	21990896	12A2p6	cell line	sgMsh2	21990896	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	195	0	0	NA	exonic	Zfp943	frameshift deletion	Zfp943:NM_001025373:exon3:c.148delT:p.F51Lfs*6	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr17	22548443	12A2p6	cell line	sgMsh2	22548443	T	C	SNV	Mutect2;MuSe;Vardict	3	0.053	756	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon6:c.A2072G:p.Y691C	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.248903666	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	561	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.267688849	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	23310423	12A2p6	cell line	sgMsh2	23310423	T	-	Deletion	Mutect2;Vardict	2	0.058	429	0	0	NA	exonic	Vmn2r114	frameshift deletion	Vmn2r114:NM_001102584:exon3:c.704delA:p.N235Mfs*9	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.272385144	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr17	23665443	12A2p6	cell line	sgMsh2	23665443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	38	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon3:c.A338G:p.E113G	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9622963	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24376386	12A2p6	cell line	sgMsh2	24376386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	117	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon8:c.T896C:p.L299P,Abca3:NM_013855:exon9:c.T896C:p.L299P"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999345	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	207	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	0.9999656	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24422227	12A2p6	cell line	sgMsh2	24422227	C	T	SNV	Mutect2;Vardict	2	0.098	221	0	0	NA	exonic	Rnps1	synonymous SNV	"Rnps1:NM_001080128:exon5:c.C531T:p.H177H,Rnps1:NM_001080127:exon6:c.C600T:p.H200H,Rnps1:NM_001357626:exon7:c.C600T:p.H200H,Rnps1:NM_009070:exon7:c.C600T:p.H200H"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.460236968	2	0.6696847	ACC	synonymous	NA	NA	NA	NA
M6_p20	chr17	24442481	12A2p6	cell line	sgMsh2	24442481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	159	0	0	NA	exonic	Dnase1l2	nonsynonymous SNV	Dnase1l2:NM_025718:exon3:c.T157C:p.Y53H	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.793673955	1	0.9371451	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24444906	12A2p6	cell line	sgMsh2	24444906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	31	0	0	NA	exonic	E4f1	synonymous SNV	"E4f1:NM_001301784:exon11:c.A1659G:p.R553R,E4f1:NM_001355708:exon11:c.A1179G:p.R393R,E4f1:NM_007893:exon11:c.A1656G:p.R552R"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9353725	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr17	24496437	12A2p6	cell line	sgMsh2	24496437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	77	0	0	NA	exonic	Caskin1	synonymous SNV	"Caskin1:NM_001360469:exon4:c.T256C:p.L86L,Caskin1:NM_027937:exon4:c.T256C:p.L86L"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.878207276	1	0.9690219	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr17	24496928	12A2p6	cell line	sgMsh2	24496928	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.118	50	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon6:c.C551T:p.T184I,Caskin1:NM_027937:exon6:c.C551T:p.T184I"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.55416288	2	0.8720839	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	29	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.99091837	1	0.9188544	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24505792	12A2p6	cell line	sgMsh2	24505792	T	C	SNV	Mutect2;MuSe;Vardict	3	0.271	10	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T3340C:p.S1114P,Caskin1:NM_027937:exon18:c.T3553C:p.S1185P"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.7127846	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24587208	12A2p6	cell line	sgMsh2	24587208	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	254	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon31:c.A10056T:p.T3352T	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.507199924	2	0.9945348	CAG	synonymous	CCCACA	12	CCCACACCCACA	NA
M6_p20	chr17	24613241	12A2p6	cell line	sgMsh2	24613241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	68	0	0	NA	exonic	Tsc2	nonsynonymous SNV	"Tsc2:NM_001039363:exon20:c.T2170C:p.F724L,Tsc2:NM_001286713:exon20:c.T2170C:p.F724L,Tsc2:NM_001286714:exon20:c.T2170C:p.F724L,Tsc2:NM_001286716:exon20:c.T2170C:p.F724L,Tsc2:NM_001286718:exon20:c.T2170C:p.F724L,Tsc2:NM_001286720:exon20:c.T2170C:p.F724L,Tsc2:NM_011647:exon20:c.T2170C:p.F724L"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.838877	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24702369	12A2p6	cell line	sgMsh2	24702369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	192	0	0	NA	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon15:c.A1447G:p.N483D	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.662177679	2	0.9911809	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24705424	12A2p6	cell line	sgMsh2	24705424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	311	0	0	NA	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon6:c.A437G:p.H146R	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.887599867	1	0.9999994	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24852744	12A2p6	cell line	sgMsh2	24852744	G	-	Deletion	Mutect2;Vardict	2	0.158	154	0	0	NA	exonic	Hagh	frameshift deletion	Hagh:NM_024284:exon2:c.90delG:p.G31Dfs*12	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.742014704	NA	NA	TGG	frameshift	NA	NA	NA	-1
M6_p20	chr17	24880730	12A2p6	cell line	sgMsh2	24880730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	112	0	0	NA	exonic	Igfals	nonsynonymous SNV	"Igfals:NM_001364895:exon2:c.T794G:p.M265R,Igfals:NM_001364896:exon2:c.T899G:p.M300R,Igfals:NM_008340:exon2:c.T794G:p.M265R"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.90638505	1	0.9973412	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24891473	12A2p6	cell line	sgMsh2	24891473	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	56	0	0	NA	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon7:c.T1273A:p.Y425N,Spsb3:NM_001163751:exon7:c.T928A:p.Y310N,Spsb3:NM_001374602:exon7:c.T835A:p.Y279N,Spsb3:NM_027141:exon7:c.T940A:p.Y314N"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.709140635	2	0.6055478	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	70	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.8462231	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25092449	12A2p6	cell line	sgMsh2	25092449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	132	0	0	NA	exonic	Ift140	nonsynonymous SNV	Ift140:NM_134126:exon26:c.A3617G:p.Y1206C	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.59642954	2	0.9967729	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25113114	12A2p6	cell line	sgMsh2	25113114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	109	0	0	NA	exonic	Telo2	nonsynonymous SNV	"Telo2:NM_001163661:exon3:c.T479A:p.V160D,Telo2:NM_027880:exon3:c.T479A:p.V160D"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9998749	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25171566	12A2p6	cell line	sgMsh2	25171566	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	106	0	0	NA	exonic	Ccdc154	nonsynonymous SNV	Ccdc154:NM_001079929:exon16:c.G1763A:p.G588D	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9998405	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25299878	12A2p6	cell line	sgMsh2	25299878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	0	0	NA	exonic	Prss34	nonsynonymous SNV	Prss34:NM_178372:exon5:c.A833G:p.K278R	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.999923	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25393902	12A2p6	cell line	sgMsh2	25393902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	81	0	0	NA	exonic	Cacna1h	nonsynonymous SNV	"Cacna1h:NM_001163691:exon7:c.A946G:p.T316A,Cacna1h:NM_021415:exon7:c.A946G:p.T316A"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.998795	GTG	nonsynonymous	TGCAC	10	TGCACTGCAC	NA
M6_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Vardict	2	0.069	85	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.324044396	3	0.9752472	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M6_p20	chr17	25831566	12A2p6	cell line	sgMsh2	25831566	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	220	0	0	NA	exonic	Stub1	nonsynonymous SNV	Stub1:NM_019719:exon4:c.A593T:p.Q198L	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.521288811	2	0.9968726	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	25960509	12A2p6	cell line	sgMsh2	25960509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	39	0	0	NA	exonic	Capn15	synonymous SNV	"Capn15:NM_015830:exon8:c.G2592A:p.R864R,Capn15:NM_001347334:exon10:c.G2790A:p.R930R"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9651268	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr17	26067991	12A2p6	cell line	sgMsh2	26067991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	39	0	0	NA	exonic	Rab11fip3	nonsynonymous SNV	"Rab11fip3:NM_001162868:exon1:c.T1187A:p.V396E,Rab11fip3:NM_001162869:exon1:c.T1187A:p.V396E"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.901688754	1	0.8921145	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	26184221	12A2p6	cell line	sgMsh2	26184221	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	180	0	0	NA	exonic	Axin1	nonsynonymous SNV	"Axin1:NM_001159598:exon5:c.A1176T:p.K392N,Axin1:NM_009733:exon5:c.A1176T:p.K392N"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	26441193	12A2p6	cell line	sgMsh2	26441193	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	133	0	0	NA	exonic	Neurl1b	nonsynonymous SNV	Neurl1b:NM_001081656:exon4:c.A1386T:p.E462D	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.35222217	3	0.9911353	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	22	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.8742441	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	27886552	12A2p6	cell line	sgMsh2	27886552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	0	0	NA	exonic	Uhrf1bp1	nonsynonymous SNV	Uhrf1bp1:NM_001080769:exon14:c.T2051A:p.L684H	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9978784	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	195	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.460236968	2	0.668788	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	113	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.455540673	2	0.620112	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	283	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	3	0.9997496	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	141	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.572948062	2	0.9981266	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	30530221	12A2p6	cell line	sgMsh2	30530221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	350	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon2:c.T118C:p.F40L,Btbd9:NM_172618:exon2:c.T118C:p.F40L"	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.488414742	2	0.9883496	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	95	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.413274012	3	0.7296565	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	74	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.389792534	3	0.7822555	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	30936331	12A2p6	cell line	sgMsh2	30936331	T	C	SNV	Mutect2;Vardict	2	0.167	28	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon13:c.T1291C:p.C431R	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.784281364	1	0.6252203	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	30992080	12A2p6	cell line	sgMsh2	30992080	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	124	0	0	NA	exonic	Umodl1	nonsynonymous SNV	Umodl1:NM_177465:exon14:c.T2576C:p.V859A	17qA3.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.366311056	3	0.9757365	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	196	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.516592515	2	9.99E-07	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M6_p20	chr17	31678065	12A2p6	cell line	sgMsh2	31678065	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	194	0	0	NA	exonic	Cryaa	nonsynonymous SNV	"Cryaa:NM_001278569:exon1:c.T65G:p.L22R,Cryaa:NM_001278570:exon1:c.T65G:p.L22R,Cryaa:NM_013501:exon1:c.T65G:p.L22R"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.35222217	3	0.9992453	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	31946715	12A2p6	cell line	sgMsh2	31946715	C	A	SNV	Mutect2;Vardict	2	0.188	19	0	0	NA	exonic	Hsf2bp	nonsynonymous SNV	Hsf2bp:NM_028902:exon8:c.G905T:p.S302I	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.882903572	1	0.7265003	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	32141444	12A2p6	cell line	sgMsh2	32141444	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	17	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.G4512A:p.E1504E	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	0.821154	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr17	32144796	12A2p6	cell line	sgMsh2	32144796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	153	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon21:c.T3369C:p.N1123N	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.732622113	2	0.5830598	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr17	32158267	12A2p6	cell line	sgMsh2	32158267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	207	0	0	NA	exonic	Notch3	frameshift deletion	Notch3:NM_008716:exon5:c.749delG:p.G250Efs*3	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.737318408	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	200	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.267688849	3	0.999999	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	33434038	12A2p6	cell line	sgMsh2	33434038	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	65	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.A1071G:p.L357L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.502503628	2	0.8416239	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr17	33538663	12A2p6	cell line	sgMsh2	33538663	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.132	178	0	0	NA	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon9:c.A233C:p.E78A,Adamts10:NM_001329143:exon10:c.A233C:p.E78A,Adamts10:NM_001329151:exon10:c.A13C:p.S5R,Adamts10:NM_001329152:exon10:c.A13C:p.S5R,Adamts10:NM_001329153:exon10:c.A13C:p.S5R,Adamts10:NM_001329154:exon10:c.A13C:p.S5R,Adamts10:NM_001329202:exon11:c.A13C:p.S5R,Adamts10:NM_001329203:exon11:c.A326C:p.E109A,Adamts10:NM_172619:exon11:c.A1430C:p.E477A"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.619911018	2	0.9988017	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	33642056	12A2p6	cell line	sgMsh2	33642056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	301	0	0	NA	exonic	Pram1	nonsynonymous SNV	Pram1:NM_001002842:exon3:c.A1523G:p.Q508R	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.558859176	2	0.9999932	CAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M6_p20	chr17	34026901	12A2p6	cell line	sgMsh2	34026901	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	141	0	0	NA	exonic	H2-Ke6	nonsynonymous SNV	H2-Ke6:NM_013543:exon6:c.T595C:p.F199L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	0.9988723	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	34059163	12A2p6	cell line	sgMsh2	34059163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	44	0	0	NA	exonic	Col11a2	synonymous SNV	"Col11a2:NM_009926:exon41:c.T2991C:p.D997D,Col11a2:NM_001317722:exon42:c.T3186C:p.D1062D"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9764624	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr17	34366476	12A2p6	cell line	sgMsh2	34366476	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	250	0	0	NA	exonic	Btnl2	synonymous SNV	Btnl2:NM_079835:exon8:c.C1450A:p.R484R	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.27708144	3	0.9999999	GCG	synonymous	GGC	8	GGCGGCGG	NA
M6_p20	chr17	34419577	12A2p6	cell line	sgMsh2	34419577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	436	0	0	NA	exonic	BC051142	synonymous SNV	"BC051142:NM_001001177:exon5:c.A126G:p.S42S,BC051142:NM_001163855:exon5:c.A126G:p.S42S"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.71383693	2	0.9789307	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.101	97	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.474325855	2	0.7687032	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.214	19	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.8444029	GAG	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	126	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.516592515	2	0.9664842	GCT	synonymous	G	5	GGGGG	NA
M6_p20	chr17	34683471	12A2p6	cell line	sgMsh2	34683471	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	112	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon6:c.T2928C:p.R976R	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.295866622	3	0.9980592	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr17	34685052	12A2p6	cell line	sgMsh2	34685052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	116	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon7:c.T3166C:p.Y1056H	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.821851729	1	0.9545672	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	42	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.868814685	1	0.8614793	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	242	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.371007352	3	0.9994021	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	34879936	12A2p6	cell line	sgMsh2	34879936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	87	0	0	NA	exonic	C2	nonsynonymous SNV	C2:NM_013484:exon3:c.T403C:p.Y135H	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.718533226	2	6.64E-05	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35081203	12A2p6	cell line	sgMsh2	35081203	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.112	89	0	0	NA	exonic	Ly6g6f	nonsynonymous SNV	Ly6g6f:NM_001163192:exon4:c.C668T:p.S223F	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.525985106	2	0.944928	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35149532	12A2p6	cell line	sgMsh2	35149532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	131	0	0	NA	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon30:c.A6311G:p.Q2104R,Prrc2a:NM_020027:exon30:c.A6314G:p.Q2105R"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.469629559	2	0.7606116	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35158000	12A2p6	cell line	sgMsh2	35158000	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.154	36	0	0	NA	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon14:c.C2133T:p.P711P,Prrc2a:NM_020027:exon14:c.C2133T:p.P711P"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.723229521	2	0.007340986	GGG	synonymous	GGCC	8	GGCCGGCC	NA
M6_p20	chr17	35159890	12A2p6	cell line	sgMsh2	35159890	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	32	0	0	NA	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon11:c.G1174A:p.E392K,Prrc2a:NM_020027:exon11:c.G1174A:p.E392K"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9401058	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35235699	12A2p6	cell line	sgMsh2	35235699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	104	0	0	NA	exonic	Nfkbil1	nonsynonymous SNV	Nfkbil1:NM_010909:exon1:c.A8G:p.N3S	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.732622113	2	6.36E-06	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Vardict	2	0.101	87	0	0	NA	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.474325855	2	0.7586151	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr17	35344959	12A2p6	cell line	sgMsh2	35344959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	502	0	0	NA	exonic	H2-Q2	nonsynonymous SNV	"H2-Q2:NM_001368740:exon4:c.T815G:p.F272C,H2-Q2:NM_010392:exon4:c.T815G:p.F272C"	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.925170232	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	35636896	12A2p6	cell line	sgMsh2	35636896	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.123	51	0	0	NA	exonic	Mucl3	synonymous SNV	Mucl3:NM_001033366:exon3:c.C1440A:p.S480S	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.577644358	2	0.8803403	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr17	35658255	12A2p6	cell line	sgMsh2	35658255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	66	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon25:c.A2553G:p.L851L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.779585069	1	0.7159858	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr17	35848547	12A2p6	cell line	sgMsh2	35848547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	136	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon5:c.A1818G:p.I606M	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.78897766	1	0.8941427	TAC	nonsynonymous	ATAC	9	ATACATACA	NA
M6_p20	chr17	35850517	12A2p6	cell line	sgMsh2	35850517	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	108	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon8:c.T2321C:p.I774T	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.333436987	3	0.9886573	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	36671197	12A2p6	cell line	sgMsh2	36671197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	410	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon3:c.G511A:p.E171K	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.366311056	3	0.9999989	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	36870135	12A2p6	cell line	sgMsh2	36870135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	59	0	0	NA	exonic	Trim10	nonsynonymous SNV	Trim10:NM_011280:exon1:c.A257G:p.Q86R	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.986222075	1	0.9908376	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	36909282	12A2p6	cell line	sgMsh2	36909282	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	92	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1089T:p.K363N	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	0.9995049	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	36947603	12A2p6	cell line	sgMsh2	36947603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	52	0	0	NA	exonic	Rnf39	synonymous SNV	Rnf39:NM_001099632:exon4:c.T1026C:p.R342R	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.695051748	2	0.64825	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	169	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.385096239	3	0.9834284	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	37195390	12A2p6	cell line	sgMsh2	37195390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	211	0	0	NA	exonic	Ubd	nonsynonymous SNV	Ubd:NM_023137:exon2:c.C166T:p.P56S	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.493111037	2	0.9650164	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	37590226	12A2p6	cell line	sgMsh2	37590226	A	G	SNV	Mutect2;Vardict	2	0.027	915	0	0	NA	exonic	Olfr114	synonymous SNV	Olfr114:NM_146287:exon1:c.T126C:p.N42N	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.126799981	3	1	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr17	37609922	12A2p6	cell line	sgMsh2	37609922	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	339	0	0	NA	exonic	Olfr115	synonymous SNV	Olfr115:NM_001011753:exon1:c.C834T:p.Y278Y	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.563555471	2	0.9999991	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr17	37672151	12A2p6	cell line	sgMsh2	37672151	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	890	0	0	NA	exonic	Olfr118	nonsynonymous SNV	Olfr118:NM_213721:exon1:c.G127A:p.V43I	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.685659157	2	0.9999999	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Vardict	2	0.089	433	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;MuSe;Vardict	3	0.064	695	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.300562918	3	1	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M6_p20	chr17	37752250	12A2p6	cell line	sgMsh2	37752250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	927	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.T395C:p.I132T	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.652785087	2	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	37952180	12A2p6	cell line	sgMsh2	37952180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	410	0	0	NA	exonic	Olfr761	synonymous SNV	Olfr761:NM_001011829:exon1:c.A843G:p.L281L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.751407295	1	0.7774638	GTA	synonymous	G	5	GGGGG	NA
M6_p20	chr17	38275376	12A2p6	cell line	sgMsh2	38275376	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	275	0	0	NA	exonic	Olfr138	nonsynonymous SNV	Olfr138:NM_130868:exon1:c.G604T:p.V202L	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	1.18E-09	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	38304580	12A2p6	cell line	sgMsh2	38304580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	112	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A880G:p.R294G	17qB1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.690355452	2	0.8444961	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	669	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.305259214	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	42502440	12A2p6	cell line	sgMsh2	42502440	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	130	0	0	NA	exonic	Ptchd4	nonsynonymous SNV	"Ptchd4:NM_001355270:exon3:c.A1240C:p.S414R,Ptchd4:NM_028474:exon4:c.A1231C:p.S411R"	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	3	0.9691025	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	42666616	12A2p6	cell line	sgMsh2	42666616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	162	0	0	NA	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289500:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289501:exon6:c.T1835C:p.V612A,Adgrf4:NM_030067:exon6:c.T1835C:p.V612A"	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.803066546	1	0.9619135	AAC	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr17	42666943	12A2p6	cell line	sgMsh2	42666943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	217	0	0	NA	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289500:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289501:exon6:c.T1508C:p.I503T,Adgrf4:NM_030067:exon6:c.T1508C:p.I503T"	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.845333207	1	0.999222	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	502	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.432059195	3	0.9898106	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr17	43450308	12A2p6	cell line	sgMsh2	43450308	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	168	0	0	NA	exonic	Adgrf5	nonsynonymous SNV	"Adgrf5:NM_001081178:exon17:c.G2893T:p.G965W,Adgrf5:NM_001357332:exon17:c.G2947T:p.G983W"	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.479022151	2	8.82E-07	AGG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	47	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.807762842	1	0.7543292	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	43602838	12A2p6	cell line	sgMsh2	43602838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	170	0	0	NA	exonic	Pla2g7	nonsynonymous SNV	Pla2g7:NM_013737:exon8:c.G671A:p.R224K	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.685659157	2	0.9480945	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	44270494	12A2p6	cell line	sgMsh2	44270494	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	39	0	0	NA	exonic	Clic5	nonsynonymous SNV	Clic5:NM_172621:exon5:c.T410C:p.L137P	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.746710999	1	0.5504259	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	297	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.295866622	3	2.23E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	45633384	12A2p6	cell line	sgMsh2	45633384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	126	0	0	NA	exonic	Capn11	synonymous SNV	Capn11:NM_001013767:exon14:c.T1593C:p.F531F	17qB3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.709140635	2	0.7647501	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	155	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.389792534	3	0.9681785	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	88	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.535377698	2	0.9564921	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr17	46306692	12A2p6	cell line	sgMsh2	46306692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	50	0	0	NA	exonic	Abcc10	stopgain	"Abcc10:NM_145140:exon14:c.T3293A:p.L1098X,Abcc10:NM_001347396:exon15:c.T3416A:p.L1139X,Abcc10:NM_170680:exon15:c.T3416A:p.L1139X"	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9853852	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	46310187	12A2p6	cell line	sgMsh2	46310187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	135	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon12:c.A2773G:p.T925A,Abcc10:NM_001347396:exon13:c.A2896G:p.T966A,Abcc10:NM_170680:exon13:c.A2896G:p.T966A"	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.652785087	2	0.9751472	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	46676762	12A2p6	cell line	sgMsh2	46676762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	70	0	0	NA	exonic	Klhdc3	synonymous SNV	"Klhdc3:NM_001163729:exon8:c.G864A:p.P288P,Klhdc3:NM_027910:exon9:c.G864A:p.P288P"	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.958044301	1	0.9926441	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr17	52839116	12A2p6	cell line	sgMsh2	52839116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	233	0	0	NA	exonic	Kcnh8	nonsynonymous SNV	Kcnh8:NM_001031811:exon7:c.A1031G:p.K344R	17qC	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.347525874	3	0.999897	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	55814243	12A2p6	cell line	sgMsh2	55814243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	191	0	0	NA	exonic	Adgre4	synonymous SNV	Adgre4:NM_139138:exon12:c.C1308T:p.L436L	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.62930361	2	0.9987355	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr17	56064084	12A2p6	cell line	sgMsh2	56064084	C	A	SNV	Mutect2;Strelka2;MuSe	3	0.207	136	0	0	NA	exonic	Chaf1a	synonymous SNV	Chaf1a:NM_013733:exon12:c.C1968A:p.R656R	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.972133188	1	0.9999536	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr17	56064087	12A2p6	cell line	sgMsh2	56064087	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.207	136	0	0	NA	exonic	Chaf1a	synonymous SNV	Chaf1a:NM_013733:exon12:c.T1971C:p.F657F	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.972133188	1	0.9999536	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr17	56082293	12A2p6	cell line	sgMsh2	56082293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	39	0	0	NA	exonic	Hdgfl2	stopgain	"Hdgfl2:NM_001304784:exon3:c.A166T:p.K56X,Hdgfl2:NM_001304785:exon3:c.A166T:p.K56X,Hdgfl2:NM_001331053:exon3:c.A166T:p.K56X,Hdgfl2:NM_008233:exon3:c.A166T:p.K56X"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	0.9651268	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56104565	12A2p6	cell line	sgMsh2	56104565	C	T	SNV	Mutect2;MuSe;Vardict	3	0.124	399	0	0	NA	exonic	Plin4	nonsynonymous SNV	"Plin4:NM_001372234:exon5:c.G3059A:p.G1020D,Plin4:NM_020568:exon6:c.G2465A:p.G822D"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.582340654	2	6.17E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.139	57	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.652785087	2	0.8054639	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56353539	12A2p6	cell line	sgMsh2	56353539	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	415	0	0	NA	exonic	Kdm4b	nonsynonymous SNV	"Kdm4b:NM_001357909:exon4:c.G332A:p.R111H,Kdm4b:NM_172132:exon4:c.G332A:p.R111H"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.211333302	3	1	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Vardict	2	0.062	129	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.291170327	3	0.9994584	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	263	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.911081345	1	0.9999992	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56705553	12A2p6	cell line	sgMsh2	56705553	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.132	64	0	0	NA	exonic	Ranbp3	synonymous SNV	"Ranbp3:NM_001252467:exon6:c.T412C:p.L138L,Ranbp3:NM_027933:exon8:c.T571C:p.L191L,Ranbp3:NM_001252466:exon9:c.T772C:p.L258L"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.619911018	2	0.00971225	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	153	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.479022151	2	0.855507	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	56853862	12A2p6	cell line	sgMsh2	56853862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	251	0	0	NA	exonic	Acsbg2	nonsynonymous SNV	Acsbg2:NM_001039114:exon8:c.T781G:p.S261A	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.67157027	2	0.9958524	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	57023515	12A2p6	cell line	sgMsh2	57023515	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	143	0	0	NA	exonic	Khsrp	synonymous SNV	Khsrp:NM_010613:exon15:c.T1680G:p.P560P	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.727925817	2	0.6257863	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	57062728	12A2p6	cell line	sgMsh2	57062728	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	34	0	0	NA	exonic	Crb3	nonsynonymous SNV	"Crb3:NM_001347408:exon2:c.T35C:p.F12S,Crb3:NM_001359813:exon2:c.T35C:p.F12S,Crb3:NM_001359814:exon2:c.T35C:p.F12S,Crb3:NM_177638:exon2:c.T35C:p.F12S"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.9486092	TTT	nonsynonymous	GTTTG	10	GTTTGGTTTG	NA
M6_p20	chr17	57107100	12A2p6	cell line	sgMsh2	57107100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	81	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.T526A:p.Y176N	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.998795	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.068	157	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.3193481	3	0.9995159	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	57410780	12A2p6	cell line	sgMsh2	57410780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	322	0	0	NA	exonic	Adgre1	nonsynonymous SNV	"Adgre1:NM_001355722:exon8:c.T877C:p.Y293H,Adgre1:NM_001355723:exon8:c.T829C:p.Y277H,Adgre1:NM_010130:exon8:c.T877C:p.Y293H"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.652785087	2	0.9998745	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	57509535	12A2p6	cell line	sgMsh2	57509535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	260	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon6:c.G1801T:p.A601S,Vmn2r120:NM_001104591:exon7:c.G1819T:p.A607S"	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.558859176	2	0.9999683	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	352	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.248903666	3	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	58410314	12A2p6	cell line	sgMsh2	58410314	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	180	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon24:c.G3890A:p.R1297K	17qD	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.610518427	2	0.9993359	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	168	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	3	0.8781966	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	66	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.601125836	2	0.9285018	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	66148789	12A2p6	cell line	sgMsh2	66148789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	219	0	0	NA	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon21:c.T2104C:p.S702P,Ddx11:NM_001348292:exon21:c.T2182C:p.S728P"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.854725798	1	0.9996182	GTC	nonsynonymous	TGTC	8	TGTCTGTC	NA
M6_p20	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	141	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.389792534	3	0.9546126	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M6_p20	chr17	66944323	12A2p6	cell line	sgMsh2	66944323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	126	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_001357625:exon10:c.T1558C:p.Y520H,Ptprm:NM_008984:exon10:c.T1558C:p.Y520H"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.572948062	2	0.9962485	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	295	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.286474031	3	9.49E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	67738873	12A2p6	cell line	sgMsh2	67738873	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	195	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.C772G:p.P258A	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.666873974	2	0.9891207	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	67748052	12A2p6	cell line	sgMsh2	67748052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	21	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon11:c.T1452C:p.V484V	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	0.000955716	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr17	67785064	12A2p6	cell line	sgMsh2	67785064	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	272	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon35:c.T4931C:p.L1644S	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.300562918	3	0.9999998	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	67791304	12A2p6	cell line	sgMsh2	67791304	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	228	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon38:c.C5495T:p.A1832V	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.709140635	2	0.09395998	GCT	nonsynonymous	GCT	8	GCTGCTGC	NA
M6_p20	chr17	67817637	12A2p6	cell line	sgMsh2	67817637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	293	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon60:c.T8691C:p.A2897A	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.746710999	1	0.624222	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr17	67881452	12A2p6	cell line	sgMsh2	67881452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	305	0	0	NA	exonic	Arhgap28	nonsynonymous SNV	"Arhgap28:NM_001347410:exon5:c.T572C:p.L191P,Arhgap28:NM_172964:exon5:c.T722C:p.L241P"	17qE1.1	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.633999905	2	0.9999665	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	68461485	12A2p6	cell line	sgMsh2	68461485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	347	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.T587C:p.M196T	17qE1.2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	69388297	12A2p6	cell line	sgMsh2	69388297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	82	0	0	NA	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.A989G:p.Y330C,Zbtb14:NM_001356283:exon3:c.A989G:p.Y330C,Zbtb14:NM_009547:exon3:c.A989G:p.Y330C"	17qE1.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.859422094	1	0.9597216	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	14	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	1	0.7804278	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	71751515	12A2p6	cell line	sgMsh2	71751515	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	64	0	0	NA	exonic	Pcare	nonsynonymous SNV	Pcare:NM_146082:exon1:c.G1166T:p.G389V	17qE1.3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.8232707	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	170	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.267688849	3	0.9999911	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	73934860	12A2p6	cell line	sgMsh2	73934860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	76	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon6:c.A443G:p.N148S	17qE2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.516592515	2	0.09093701	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	74447996	12A2p6	cell line	sgMsh2	74447996	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	65	0	0	NA	exonic	Nlrc4	frameshift deletion	Nlrc4:NM_001033367:exon3:c.224delA:p.N75Tfs*9	17qE2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr17	75539432	12A2p6	cell line	sgMsh2	75539432	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	213	0	0	NA	exonic	Fam98a	nonsynonymous SNV	"Fam98a:NM_001357860:exon5:c.T104A:p.V35D,Fam98a:NM_133747:exon6:c.T689A:p.V230D"	17qE2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.446148081	3	0.6045727	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	78280062	12A2p6	cell line	sgMsh2	78280062	C	-	Deletion	Mutect2;Vardict	2	0.156	86	0	0	NA	exonic	Crim1	frameshift deletion	Crim1:NM_015800:exon3:c.595delC:p.E202Sfs*25	17qE2	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.732622113	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6_p20	chr17	78795108	12A2p6	cell line	sgMsh2	78795108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	191	0	0	NA	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon24:c.A3840G:p.L1280L	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.535377698	2	0.9977724	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	106	0	0	NA	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.422666603	3	8.24E-06	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	78855344	12A2p6	cell line	sgMsh2	78855344	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	148	0	0	NA	exonic	Eif2ak2	nonsynonymous SNV	Eif2ak2:NM_011163:exon15:c.A1424G:p.E475G	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.676266565	2	0.9500524	TTC	nonsynonymous	ACTT	8	ACTTACTT	NA
M6_p20	chr17	78934740	12A2p6	cell line	sgMsh2	78934740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	150	0	0	NA	exonic	Cebpz	nonsynonymous SNV	Cebpz:NM_001024806:exon2:c.C1484T:p.P495L	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.619911018	2	0.9964338	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	220	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.709140635	2	0.8985244	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	80238795	12A2p6	cell line	sgMsh2	80238795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	16	0	0	NA	exonic	Dhx57	nonsynonymous SNV	"Dhx57:NM_198942:exon23:c.A4000G:p.T1334A,Dhx57:NM_001163759:exon24:c.A4159G:p.T1387A"	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	2	1	1	0.8084062	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	80615070	12A2p6	cell line	sgMsh2	80615070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	150	0	0	NA	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon20:c.T1421A:p.V474D,Map4k3:NM_001360278:exon20:c.T1391A:p.V464D"	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.770192477	1	0.8098697	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	81648313	12A2p6	cell line	sgMsh2	81648313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	248	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon2:c.A1295T:p.D432V,Slc8a1:NM_001286684:exon2:c.A1295T:p.D432V,Slc8a1:NM_011406:exon2:c.A1295T:p.D432V"	17qE3	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.779585069	1	0.9535673	GTC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr17	83221013	12A2p6	cell line	sgMsh2	83221013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	49	0	0	NA	exonic	Pkdcc	synonymous SNV	Pkdcc:NM_134117:exon3:c.G810A:p.P270P	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.680962861	2	0.6843912	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	315	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.610518427	2	0.9999977	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	345	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.610518427	2	0.9999993	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M6_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	205	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.417970308	3	0.9281496	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.375703647	3	0.0960444	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	84751229	12A2p6	cell line	sgMsh2	84751229	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	309	0	0	NA	exonic	Lrpprc	synonymous SNV	Lrpprc:NM_028233:exon21:c.A2202G:p.Q734Q	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.253599962	3	1.07E-09	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr17	85028758	12A2p6	cell line	sgMsh2	85028758	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.114	77	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.C327A:p.I109I	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.535377698	2	0.9391753	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr17	86168897	12A2p6	cell line	sgMsh2	86168897	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.093	71	0	0	NA	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon1:c.T305A:p.F102Y	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.43675549	2	0.00064308	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	101	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.615214723	2	0.9788286	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	86994565	12A2p6	cell line	sgMsh2	86994565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	21	0	0	NA	exonic	Rhoq	nonsynonymous SNV	Rhoq:NM_145491:exon3:c.T208C:p.Y70H	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.915777641	1	0.7846755	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr17	87135223	12A2p6	cell line	sgMsh2	87135223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	90	0	0	NA	exonic	Socs5	synonymous SNV	Socs5:NM_019654:exon3:c.A1590C:p.R530R	17qE4	chr17-3079405-87650787	4	3	1	0.93	4.367554902	NA	1	0.657481383	2	0.09449651	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.339	71	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	29.89567001	26.89567001	3	0.93	4.367554902	NA	10	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M6_p20	chr17	87988322	12A2p6	cell line	sgMsh2	87988322	T	-	Deletion	Mutect2;Vardict	2	0.111	229	0	0	NA	exonic	Msh6	frameshift deletion	Msh6:NM_010830:exon5:c.3300delT:p.F1102Lfs*10	17qE4	chr17-87745782-94740433	5	3	2	0.93	4.367554902	NA	1	0.521288811	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr17	90059548	12A2p6	cell line	sgMsh2	90059548	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	182	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon2:c.C49A:p.L17I,Nrxn1:NM_001347419:exon2:c.C49A:p.L17I,Nrxn1:NM_001346960:exon5:c.C937A:p.L313I,Nrxn1:NM_001346961:exon5:c.C937A:p.L313I,Nrxn1:NM_001346958:exon6:c.C1027A:p.L343I,Nrxn1:NM_001346959:exon6:c.C1027A:p.L343I,Nrxn1:NM_001346957:exon18:c.C4003A:p.L1335I,Nrxn1:NM_177284:exon20:c.C4108A:p.L1370I,Nrxn1:NM_020252:exon22:c.C4144A:p.L1382I"	17qE5	chr17-87745782-94740433	5	3	2	0.93	4.367554902	NA	1	0.248903666	3	0.999999	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	300	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	4343023	12A2p6	cell line	sgMsh2	4343023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	119	0	0	NA	exonic	Map3k8	nonsynonymous SNV	Map3k8:NM_007746:exon3:c.T503C:p.L168P	18qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	90	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	5214851	12A2p6	cell line	sgMsh2	5214851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	225	0	0	NA	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon4:c.A106G:p.T36A,Zfp438:NM_178722:exon4:c.A106G:p.T36A"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.7748596	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	6220979	12A2p6	cell line	sgMsh2	6220979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	177	0	0	NA	exonic	Kif5b	synonymous SNV	Kif5b:NM_008448:exon12:c.T1128C:p.I376I	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999995	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr18	7288548	12A2p6	cell line	sgMsh2	7288548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon4:c.A318G:p.Q106Q	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9980431	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr18	7355046	12A2p6	cell line	sgMsh2	7355046	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	337	0	0	NA	exonic	Mpp7	frameshift deletion	"Mpp7:NM_001081287:exon15:c.1379delA:p.K460Rfs*11,Mpp7:NM_001360860:exon16:c.1379delA:p.K460Rfs*11"	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.929866528	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	40	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9677517	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	12188311	12A2p6	cell line	sgMsh2	12188311	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	123	0	0	NA	exonic	Rmc1	nonsynonymous SNV	Rmc1:NM_029623:exon15:c.C1399T:p.P467S	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.8457018	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	180	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	20340838	12A2p6	cell line	sgMsh2	20340838	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.209	334	0	0	NA	exonic	Dsg1a	frameshift insertion	Dsg1a:NM_010079:exon15:c.2968dupG:p.V992Gfs*10	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.981525779	NA	NA	TAG	frameshift	G	5	GGGGG	1
M6_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	164	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999985	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	20533423	12A2p6	cell line	sgMsh2	20533423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	189	0	0	NA	exonic	Dsg3	nonsynonymous SNV	Dsg3:NM_030596:exon12:c.A1688G:p.Y563C	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	20720135	12A2p6	cell line	sgMsh2	20720135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	209	0	0	NA	exonic	B4galt6	synonymous SNV	B4galt6:NM_019737:exon3:c.T240C:p.P80P	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	3.92E-08	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr18	21147800	12A2p6	cell line	sgMsh2	21147800	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	113	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.C1498A:p.L500M	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9826584	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	21148113	12A2p6	cell line	sgMsh2	21148113	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	195	0	0	NA	exonic	Garem1	synonymous SNV	Garem1:NM_001033445:exon4:c.C1185T:p.L395L	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.9745382	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr18	22020869	12A2p6	cell line	sgMsh2	22020869	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.121	55	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon18:c.T1882A:p.L628I	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.899947	AAT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr18	22434636	12A2p6	cell line	sgMsh2	22434636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	116	0	0	NA	exonic	Asxl3	synonymous SNV	Asxl3:NM_001167777:exon6:c.A270G:p.V90V	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.999929	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	250	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	2.38E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	23039830	12A2p6	cell line	sgMsh2	23039830	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.225	49	0	0	NA	exonic	Nol4	synonymous SNV	"Nol4:NM_001347509:exon1:c.T213C:p.R71R,Nol4:NM_001347510:exon1:c.T213C:p.R71R,Nol4:NM_199024:exon1:c.T213C:p.R71R"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9841726	CAC	synonymous	C	5	CCCCC	NA
M6_p20	chr18	23646896	12A2p6	cell line	sgMsh2	23646896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	64	0	0	NA	exonic	Dtna	nonsynonymous SNV	"Dtna:NM_001285817:exon17:c.A1741G:p.S581G,Dtna:NM_001361215:exon17:c.A1741G:p.S581G,Dtna:NM_001285808:exon18:c.A1762G:p.S588G,Dtna:NM_001285810:exon18:c.A1750G:p.S584G,Dtna:NM_001361216:exon18:c.A1741G:p.S581G,Dtna:NM_001361217:exon18:c.A1741G:p.S581G,Dtna:NM_207650:exon18:c.A1741G:p.S581G,Dtna:NM_001285813:exon19:c.A1750G:p.S584G,Dtna:NM_001285807:exon22:c.A1933G:p.S645G"	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9106419	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	24679789	12A2p6	cell line	sgMsh2	24679789	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	79	0	0	NA	exonic	Mocos	nonsynonymous SNV	Mocos:NM_026779:exon8:c.T1739A:p.I580N	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9985835	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	71	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.6369748	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	31887733	12A2p6	cell line	sgMsh2	31887733	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	49	0	0	NA	exonic	Wdr33	nonsynonymous SNV	Wdr33:NM_028866:exon15:c.A1555C:p.N519H	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.870678	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	31888265	12A2p6	cell line	sgMsh2	31888265	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.115	43	0	0	NA	exonic	Wdr33	nonsynonymous SNV	Wdr33:NM_028866:exon16:c.G1867T:p.G623C	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.8232394	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	32208688	12A2p6	cell line	sgMsh2	32208688	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	119	0	0	NA	exonic	Map3k2	nonsynonymous SNV	Map3k2:NM_011946:exon9:c.G644A:p.G215E	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9933495	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	32208714	12A2p6	cell line	sgMsh2	32208714	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	114	0	0	NA	exonic	Map3k2	nonsynonymous SNV	Map3k2:NM_011946:exon9:c.T670G:p.L224V	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.967877	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	33442853	12A2p6	cell line	sgMsh2	33442853	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	191	0	0	NA	exonic	Nrep	nonsynonymous SNV	"Nrep:NM_053078:exon3:c.C44T:p.P15L,Nrep:NM_001109988:exon4:c.C44T:p.P15L,Nrep:NM_001109989:exon4:c.C44T:p.P15L,Nrep:NM_001267717:exon4:c.C44T:p.P15L"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34312372	12A2p6	cell line	sgMsh2	34312372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	272	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2143G:p.I715V,Apc:NM_007462:exon16:c.A2320G:p.I774V,Apc:NM_001360980:exon17:c.A2374G:p.I792V"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	1.23E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	72	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.09348911	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34317049	12A2p6	cell line	sgMsh2	34317049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	83	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A6820G:p.R2274G,Apc:NM_007462:exon16:c.A6997G:p.R2333G,Apc:NM_001360980:exon17:c.A7051G:p.R2351G"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9989749	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34425065	12A2p6	cell line	sgMsh2	34425065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	113	0	0	NA	exonic	Pkd2l2	nonsynonymous SNV	"Pkd2l2:NM_001163004:exon6:c.T796C:p.F266L,Pkd2l2:NM_016927:exon6:c.T796C:p.F266L"	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9904509	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	84	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.8360545	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	34905059	12A2p6	cell line	sgMsh2	34905059	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	79	0	0	NA	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon11:c.T1243C:p.Y415H	18qB1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.000948612	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	35734582	12A2p6	cell line	sgMsh2	35734582	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.148	88	0	0	NA	exonic	Sting1	nonsynonymous SNV	"Sting1:NM_001289591:exon7:c.T1207C:p.S403P,Sting1:NM_001289592:exon8:c.T937C:p.S313P,Sting1:NM_028261:exon8:c.T1060C:p.S354P"	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.7619869	GAG	nonsynonymous	GGAG	9	GGAGGGAGG	NA
M6_p20	chr18	36451119	12A2p6	cell line	sgMsh2	36451119	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	232	0	0	NA	exonic	Pfdn1	nonsynonymous SNV	Pfdn1:NM_026027:exon2:c.T161G:p.L54R	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9999945	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	36589454	12A2p6	cell line	sgMsh2	36589454	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	191	0	0	NA	exonic	Ankhd1	synonymous SNV	Ankhd1:NM_175375:exon6:c.T1029C:p.T343T	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.262992553	3	0.9999986	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr18	36932452	12A2p6	cell line	sgMsh2	36932452	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	251	0	0	NA	exonic	Pcdha1	nonsynonymous SNV	Pcdha1:NM_054072:exon1:c.C2168A:p.A723E	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9550743	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	36947985	12A2p6	cell line	sgMsh2	36947985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	180	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.G1779A:p.A593A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999996	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr18	36999240	12A2p6	cell line	sgMsh2	36999240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	462	0	0	NA	exonic	Pcdha9	nonsynonymous SNV	Pcdha9:NM_138661:exon1:c.T1361C:p.V454A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.505561	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
M6_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	250	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9999793	ATT	synonymous	ATT	9	ATTATTATT	NA
M6_p20	chr18	37006858	12A2p6	cell line	sgMsh2	37006858	G	A	SNV	Mutect2;MuSe;Vardict	3	0.085	353	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.G1539A:p.A513A	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9993819	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr18	37020761	12A2p6	cell line	sgMsh2	37020761	T	C	SNV	Mutect2;Vardict	2	0.043	131	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T532C:p.F178L	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.201940711	3	0.9999942	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	238	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9906861	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37022463	12A2p6	cell line	sgMsh2	37022463	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.07	135	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T2234A:p.V745E	18qB2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	0.9975064	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37144501	12A2p6	cell line	sgMsh2	37144501	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	54	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.C533T:p.A178V	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9893843	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37267308	12A2p6	cell line	sgMsh2	37267308	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	160	0	0	NA	exonic	Pcdhb1	nonsynonymous SNV	Pcdhb1:NM_053126:exon1:c.C2311G:p.L771V	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.999998	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2	2	0.125	50	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.08811608	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	154	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.5276859	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37302917	12A2p6	cell line	sgMsh2	37302917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	279	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	1.13E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37309772	12A2p6	cell line	sgMsh2	37309772	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.186	301	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.A2134T:p.R712W	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9999964	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	196	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.8879665	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37357583	12A2p6	cell line	sgMsh2	37357583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	108	0	0	NA	exonic	Pcdhb8	synonymous SNV	Pcdhb8:NM_053133:exon1:c.T2313C:p.I771I	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9185858	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr18	37402875	12A2p6	cell line	sgMsh2	37402875	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	337	0	0	NA	exonic	Pcdhb9	synonymous SNV	Pcdhb9:NM_053134:exon1:c.T1921C:p.L641L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	60	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.615214723	2	0.09404528	ATT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	69	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9369517	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr18	37478269	12A2p6	cell line	sgMsh2	37478269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	97	0	0	NA	exonic	Pcdhb16	frameshift deletion	Pcdhb16:NM_053141:exon1:c.281delA:p.K95Nfs*10	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.99091837	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr18	37515185	12A2p6	cell line	sgMsh2	37515185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	427	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1366G:p.T456A	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.929866528	1	1.01E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.575	245	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	1	3.07E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37687064	12A2p6	cell line	sgMsh2	37687064	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	292	0	0	NA	exonic	Pcdhga4	synonymous SNV	Pcdhga4:NM_033587:exon1:c.C1665T:p.N555N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9966268	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr18	37717080	12A2p6	cell line	sgMsh2	37717080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	202	0	0	NA	exonic	Pcdhga7	synonymous SNV	Pcdhga7:NM_033590:exon1:c.A2139G:p.L713L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9977254	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr18	37742541	12A2p6	cell line	sgMsh2	37742541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	167	0	0	NA	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.A301G:p.K101E	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999989	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37753480	12A2p6	cell line	sgMsh2	37753480	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	171	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1702A:p.D568N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999992	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37753772	12A2p6	cell line	sgMsh2	37753772	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	281	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1994A:p.S665N	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9992796	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37758106	12A2p6	cell line	sgMsh2	37758106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	105	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A2166G:p.L722L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9835693	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr18	37766536	12A2p6	cell line	sgMsh2	37766536	A	-	Deletion	Mutect2;Vardict	2	0.22	32	0	0	NA	exonic	Pcdhga12	frameshift deletion	Pcdhga12:NM_033595:exon1:c.420delA:p.M142fs*0	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr18	37768454	12A2p6	cell line	sgMsh2	37768454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	64	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A2338C:p.I780L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9952465	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37825061	12A2p6	cell line	sgMsh2	37825061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	93	0	0	NA	exonic	Gm37013;Gm38666;Gm38667;Pcdhga1;Pcdhga10;Pcdhga11;Pcdhga12;Pcdhga2;Pcdhga3;Pcdhga4;Pcdhga5;Pcdhga6;Pcdhga7;Pcdhga8;Pcdhga9;Pcdhgb1;Pcdhgb2;Pcdhgb4;Pcdhgb5;Pcdhgb6;Pcdhgb7;Pcdhgb8;Pcdhgc3;Pcdhgc4;Pcdhgc5	nonsynonymous SNV	"Gm37013:NM_001174154:exon2:c.A2426G:p.Q809R,Gm38666:NM_001301256:exon2:c.A2450G:p.Q817R,Gm38667:NM_001301259:exon2:c.A2423G:p.Q808R,Pcdhgb1:NM_033574:exon2:c.A2423G:p.Q808R,Pcdhgb2:NM_033575:exon2:c.A2453G:p.Q818R,Pcdhgb4:NM_033576:exon2:c.A2405G:p.Q802R,Pcdhgb5:NM_033577:exon2:c.A2447G:p.Q816R,Pcdhgb6:NM_033578:exon2:c.A2459G:p.Q820R,Pcdhgb7:NM_033579:exon2:c.A2456G:p.Q819R,Pcdhgc3:NM_033581:exon2:c.A2471G:p.Q824R,Pcdhgc4:NM_033582:exon2:c.A2492G:p.Q831R,Pcdhgc5:NM_033583:exon2:c.A2501G:p.Q834R,Pcdhga1:NM_033584:exon2:c.A2462G:p.Q821R,Pcdhga2:NM_033585:exon2:c.A2462G:p.Q821R,Pcdhga3:NM_033586:exon2:c.A2453G:p.Q818R,Pcdhga4:NM_033587:exon2:c.A2459G:p.Q820R,Pcdhga5:NM_033588:exon2:c.A2465G:p.Q822R,Pcdhga6:NM_033589:exon2:c.A2465G:p.Q822R,Pcdhga7:NM_033590:exon2:c.A2474G:p.Q825R,Pcdhga8:NM_033591:exon2:c.A2465G:p.Q822R,Pcdhga9:NM_033592:exon2:c.A2465G:p.Q822R,Pcdhga10:NM_033593:exon2:c.A2459G:p.Q820R,Pcdhga11:NM_033594:exon2:c.A2468G:p.Q823R,Pcdhga12:NM_033595:exon2:c.A2465G:p.Q822R"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9762884	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37851604	12A2p6	cell line	sgMsh2	37851604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	80	0	0	NA	exonic	Diaph1	nonsynonymous SNV	"Diaph1:NM_007858:exon26:c.T3557C:p.L1186P,Diaph1:NM_001305980:exon27:c.T3584C:p.L1195P,Diaph1:NM_001305981:exon28:c.T3452C:p.L1151P"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9669027	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	340	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.8730142	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	28	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9189909	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	121	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9390914	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	38283912	12A2p6	cell line	sgMsh2	38283912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	44	0	0	NA	exonic	Pcdh12	synonymous SNV	Pcdh12:NM_017378:exon1:c.A159G:p.L53L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9764624	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr18	38308372	12A2p6	cell line	sgMsh2	38308372	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	221	0	0	NA	exonic	Rnf14	nonsynonymous SNV	"Rnf14:NM_001164622:exon4:c.C436T:p.P146S,Rnf14:NM_020012:exon5:c.C814T:p.P272S,Rnf14:NM_001164621:exon6:c.C814T:p.P272S,Rnf14:NM_001361264:exon6:c.C814T:p.P272S,Rnf14:NM_001361266:exon6:c.C814T:p.P272S,Rnf14:NM_001361267:exon6:c.C814T:p.P272S,Rnf14:NM_001361265:exon7:c.C814T:p.P272S,Rnf14:NM_001361268:exon7:c.C814T:p.P272S,Rnf14:NM_001361269:exon7:c.C814T:p.P272S"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.55738	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	39296795	12A2p6	cell line	sgMsh2	39296795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	173	0	0	NA	exonic	Arhgap26	nonsynonymous SNV	"Arhgap26:NM_001361073:exon19:c.C1709T:p.T570M,Arhgap26:NM_001374831:exon19:c.C1709T:p.T570M,Arhgap26:NM_175164:exon19:c.C1709T:p.T570M"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.650848	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	136	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.8735412	GTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	105	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.300562918	3	0.9964058	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	219	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.9998967	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	43563329	12A2p6	cell line	sgMsh2	43563329	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	166	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon11:c.G1554T:p.E518D	18qB3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9576382	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	45685341	12A2p6	cell line	sgMsh2	45685341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	155	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	"Kcnn2:NM_080465:exon8:c.A1504G:p.I502V,Kcnn2:NM_001312905:exon11:c.A2329G:p.I777V"	18qC	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.943955414	1	0.9999534	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	204	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.8062237	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr18	46248930	12A2p6	cell line	sgMsh2	46248930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	152	0	0	NA	exonic	Pggt1b	nonsynonymous SNV	Pggt1b:NM_172627:exon7:c.G784A:p.G262R	18qC	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999961	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	406	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.23481478	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	46881476	12A2p6	cell line	sgMsh2	46881476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	282	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon9:c.T1640C:p.M547T	18qC	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.94865171	1	1.09E-08	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	215	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.09737563	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	50053578	12A2p6	cell line	sgMsh2	50053578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	15	0	0	NA	exonic	Tnfaip8	nonsynonymous SNV	Tnfaip8:NM_134131:exon1:c.A32G:p.H11R	18qD1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	2	1	1	0.7948483	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.213	21	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.000955716	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr18	54895603	12A2p6	cell line	sgMsh2	54895603	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.154	42	0	0	NA	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon5:c.A2459G:p.Y820C,Zfp608:NM_175751:exon6:c.A3737G:p.Y1246C"	18qD3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.5220988	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	124	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9992561	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	61083359	12A2p6	cell line	sgMsh2	61083359	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	97	0	0	NA	exonic	Pdgfrb	synonymous SNV	"Pdgfrb:NM_001146268:exon23:c.T3276G:p.A1092A,Pdgfrb:NM_008809:exon23:c.T3273G:p.A1091A"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.582340654	2	0.9856829	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr18	61311113	12A2p6	cell line	sgMsh2	61311113	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	39	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon5:c.A978C:p.Q326H,Ppargc1b:NM_001364996:exon6:c.A1026C:p.Q342H"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9651268	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	91	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7324508	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	63092879	12A2p6	cell line	sgMsh2	63092879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	65	0	0	NA	exonic	Piezo2	synonymous SNV	Piezo2:NM_001039485:exon19:c.T2685C:p.G895G	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5358729	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr18	63106236	12A2p6	cell line	sgMsh2	63106236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	68	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon16:c.T2272C:p.Y758H	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9965567	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	63736404	12A2p6	cell line	sgMsh2	63736404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	112	0	0	NA	exonic	Wdr7	synonymous SNV	"Wdr7:NM_001014981:exon9:c.T864C:p.S288S,Wdr7:NM_001360837:exon9:c.T864C:p.S288S"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.286474031	3	0.9986932	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr18	67218523	12A2p6	cell line	sgMsh2	67218523	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	127	0	0	NA	exonic	Gnal	nonsynonymous SNV	"Gnal:NM_010307:exon11:c.A951T:p.E317D,Gnal:NM_177137:exon11:c.A1152T:p.E384D"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9998707	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	67431690	12A2p6	cell line	sgMsh2	67431690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	62	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon7:c.A713G:p.N238S	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5360545	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	67623224	12A2p6	cell line	sgMsh2	67623224	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	195	0	0	NA	exonic	Cep76	synonymous SNV	"Cep76:NM_001081073:exon10:c.A1536G:p.P512P,Cep76:NM_001357523:exon10:c.A1002G:p.P334P"	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	58	0	0	NA	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr18	67841306	12A2p6	cell line	sgMsh2	67841306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	114	0	0	NA	exonic	Cep192	nonsynonymous SNV	Cep192:NM_027556:exon20:c.T3479C:p.L1160P	18qE1	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.5098497	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	68314063	12A2p6	cell line	sgMsh2	68314063	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.214	196	0	0	NA	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.T1017A:p.N339K,Rnmt:NM_026440:exon7:c.T1017A:p.N339K,Rnmt:NM_001361002:exon8:c.T1017A:p.N339K"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	68314065	12A2p6	cell line	sgMsh2	68314065	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.214	196	0	0	NA	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.A1019C:p.Y340S,Rnmt:NM_026440:exon7:c.A1019C:p.Y340S,Rnmt:NM_001361002:exon8:c.A1019C:p.Y340S"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	158	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	9.54E-08	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	73937142	12A2p6	cell line	sgMsh2	73937142	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	114	0	0	NA	exonic	Mapk4	frameshift deletion	"Mapk4:NM_001360936:exon2:c.142delA:p.M48Cfs*15,Mapk4:NM_172632:exon3:c.679delA:p.M227Cfs*15"	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.826548024	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	92	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	8.36E-06	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	74949253	12A2p6	cell line	sgMsh2	74949253	C	T	SNV	Mutect2;Vardict	2	0.15	29	0	0	NA	exonic	Lipg	nonsynonymous SNV	Lipg:NM_010720:exon5:c.G598A:p.E200K	18qE2	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.5364559	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	75230060	12A2p6	cell line	sgMsh2	75230060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	214	0	0	NA	exonic	Dym	nonsynonymous SNV	Dym:NM_027727:exon15:c.A1634G:p.N545S	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9994552	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	77286450	12A2p6	cell line	sgMsh2	77286450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	150	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon2:c.G216T:p.G72G	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999955	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr18	77361795	12A2p6	cell line	sgMsh2	77361795	A	G	SNV	Mutect2;Strelka2	2	0.08	152	0	0	NA	exonic	Loxhd1	nonsynonymous SNV	Loxhd1:NM_172834:exon15:c.A2044G:p.K682E	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.375703647	3	0.9843667	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	78120159	12A2p6	cell line	sgMsh2	78120159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	76	0	0	NA	exonic	Slc14a1	nonsynonymous SNV	Slc14a1:NM_001171010:exon2:c.T136C:p.W46R	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.5488532	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	80128931	12A2p6	cell line	sgMsh2	80128931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	175	0	0	NA	exonic	Adnp2	synonymous SNV	Adnp2:NM_175028:exon4:c.T2262C:p.S754S	18qE3	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9962506	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	108	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9754349	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	89013091	12A2p6	cell line	sgMsh2	89013091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	76	0	0	NA	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1925G:p.I642S	18qE4	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr18	89128765	12A2p6	cell line	sgMsh2	89128765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	184	0	0	NA	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon47:c.T6431C:p.V2144A	18qE4	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	283	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	3591798	12A2p6	cell line	sgMsh2	3591798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	164	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon20:c.C4163A:p.P1388H	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	3591809	12A2p6	cell line	sgMsh2	3591809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	169	0	0	NA	exonic	Lrp5	synonymous SNV	Lrp5:NM_008513:exon20:c.T4152C:p.S1384S	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	3896637	12A2p6	cell line	sgMsh2	3896637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	142	0	0	NA	exonic	Tcirg1	synonymous SNV	"Tcirg1:NM_001136091:exon18:c.T2215C:p.L739L,Tcirg1:NM_001167784:exon18:c.T2215C:p.L739L,Tcirg1:NM_016921:exon18:c.T2215C:p.L739L"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	3943578	12A2p6	cell line	sgMsh2	3943578	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	77	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	"Unc93b1:NM_001161428:exon8:c.T1019G:p.L340R,Unc93b1:NM_019449:exon8:c.T1019G:p.L340R"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4324783	12A2p6	cell line	sgMsh2	4324783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	36	0	0	NA	exonic	Kdm2a	synonymous SNV	Kdm2a:NM_001001984:exon17:c.A2319G:p.V773V	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	4450930	12A2p6	cell line	sgMsh2	4450930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	190	0	0	NA	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1091G:p.Q364R	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	CACCT	10	CACCTCACCT	NA
M6_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.605	68	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	104	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	115	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4787834	12A2p6	cell line	sgMsh2	4787834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	529	0	0	NA	exonic	Gm21992;Rbm4	nonsynonymous SNV	"Gm21992:NM_001290128:exon2:c.T546G:p.D182E,Rbm4:NM_001290122:exon3:c.T621G:p.D207E,Rbm4:NM_001290123:exon3:c.T621G:p.D207E,Gm21992:NM_001290127:exon3:c.T969G:p.D323E,Rbm4:NM_009032:exon3:c.T621G:p.D207E"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4864044	12A2p6	cell line	sgMsh2	4864044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	189	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon15:c.A1784G:p.Y595C	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4872343	12A2p6	cell line	sgMsh2	4872343	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	234	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon3:c.G275T:p.R92M	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	106	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	4988880	12A2p6	cell line	sgMsh2	4988880	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	62	0	0	NA	exonic	Npas4	synonymous SNV	Npas4:NM_153553:exon2:c.T183G:p.P61P	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	5026119	12A2p6	cell line	sgMsh2	5026119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	201	0	0	NA	exonic	Slc29a2	nonsynonymous SNV	Slc29a2:NM_007854:exon3:c.A203G:p.N68S	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5069793	12A2p6	cell line	sgMsh2	5069793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	62	0	0	NA	exonic	Cd248	synonymous SNV	Cd248:NM_054042:exon1:c.T1668C:p.T556T	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	5390984	12A2p6	cell line	sgMsh2	5390984	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.126	53	0	0	NA	exonic	Tsga10ip	nonsynonymous SNV	Tsga10ip:NM_001373978:exon6:c.A1322G:p.Y441C	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5426195	12A2p6	cell line	sgMsh2	5426195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	78	0	0	NA	exonic	AI837181	nonsynonymous SNV	AI837181:NM_134149:exon2:c.T385C:p.Y129H	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5485091	12A2p6	cell line	sgMsh2	5485091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	76	0	0	NA	exonic	Mus81	synonymous SNV	Mus81:NM_027877:exon9:c.A909G:p.L303L	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	5498732	12A2p6	cell line	sgMsh2	5498732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	407	0	0	NA	exonic	Snx32	synonymous SNV	"Snx32:NM_001024560:exon2:c.T132C:p.T44T,Snx32:NM_001362042:exon2:c.T132C:p.T44T"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	5570811	12A2p6	cell line	sgMsh2	5570811	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	70	0	0	NA	exonic	Ap5b1	nonsynonymous SNV	"Ap5b1:NM_001033448:exon2:c.C2258T:p.A753V,Ap5b1:NM_001362046:exon3:c.C2258T:p.A753V"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5570890	12A2p6	cell line	sgMsh2	5570890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	49	0	0	NA	exonic	Ap5b1	synonymous SNV	"Ap5b1:NM_001033448:exon2:c.T2337C:p.R779R,Ap5b1:NM_001362046:exon3:c.T2337C:p.R779R"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	5655062	12A2p6	cell line	sgMsh2	5655062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	48	0	0	NA	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon8:c.T1504C:p.F502L,Sipa1:NM_001164568:exon8:c.T1504C:p.F502L,Sipa1:NM_001164480:exon9:c.T1504C:p.F502L,Sipa1:NM_011379:exon9:c.T1504C:p.F502L,Sipa1:NM_001164481:exon10:c.T1504C:p.F502L"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	214	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	35	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5702130	12A2p6	cell line	sgMsh2	5702130	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.106	77	0	0	NA	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2339G:p.D780G	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5751857	12A2p6	cell line	sgMsh2	5751857	G	-	Deletion	Mutect2;Vardict	2	0.164	34	0	0	NA	exonic	Ltbp3	frameshift deletion	Ltbp3:NM_008520:exon16:c.2202delG:p.G736Afs*45	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6_p20	chr19	5757602	12A2p6	cell line	sgMsh2	5757602	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	178	0	0	NA	exonic	Ltbp3	synonymous SNV	Ltbp3:NM_008520:exon26:c.C3453T:p.P1151P	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCC	synonymous	C	5	CCCCC	NA
M6_p20	chr19	5757789	12A2p6	cell line	sgMsh2	5757789	T	C	SNV	Mutect2;Vardict	2	0.076	82	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon27:c.T3557C:p.V1186A	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	GGCGG	10	GGCGGGGCGG	NA
M6_p20	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	123	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5766276	12A2p6	cell line	sgMsh2	5766276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	164	0	0	NA	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon6:c.T890A:p.L297Q,Scyl1:NM_001361922:exon6:c.T890A:p.L297Q,Scyl1:NM_023912:exon6:c.T890A:p.L297Q"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	5770781	12A2p6	cell line	sgMsh2	5770781	A	-	Deletion	Mutect2;Vardict	2	0.084	105	0	0	NA	exonic	Scyl1	frameshift deletion	"Scyl1:NM_001361921:exon2:c.194delT:p.F65Sfs*27,Scyl1:NM_001361922:exon2:c.194delT:p.F65Sfs*27,Scyl1:NM_023912:exon2:c.194delT:p.F65Sfs*27"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr19	5905434	12A2p6	cell line	sgMsh2	5905434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	141	0	0	NA	exonic	Dpf2	synonymous SNV	"Dpf2:NM_001291078:exon4:c.T420C:p.D140D,Dpf2:NM_011262:exon4:c.T420C:p.D140D"	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr19	5972998	12A2p6	cell line	sgMsh2	5972998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	182	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon7:c.A1116G:p.V372V	19qA	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	6082695	12A2p6	cell line	sgMsh2	6082695	A	G	SNV	Mutect2;Vardict	2	0.114	42	0	0	NA	exonic	Zfpl1	nonsynonymous SNV	"Zfpl1:NM_001356994:exon4:c.T298C:p.C100R,Zfpl1:NM_024231:exon4:c.T298C:p.C100R"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.535377698	2	0.8128876	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	6112724	12A2p6	cell line	sgMsh2	6112724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	284	0	0	NA	exonic	Naaladl1	synonymous SNV	Naaladl1:NM_001009546:exon12:c.T1461C:p.S487S	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.709140635	2	0.9459952	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	79	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.972133188	1	0.9971707	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	7018726	12A2p6	cell line	sgMsh2	7018726	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	134	0	0	NA	exonic	Fermt3	nonsynonymous SNV	"Fermt3:NM_001362399:exon2:c.C100T:p.L34F,Fermt3:NM_153795:exon2:c.C100T:p.L34F"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.563555471	2	0.9966834	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	7025374	12A2p6	cell line	sgMsh2	7025374	G	-	Deletion	Mutect2;Vardict	2	0.098	114	0	0	NA	exonic	Stip1	frameshift deletion	Stip1:NM_016737:exon10:c.1186delC:p.L396Cfs*27	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.460236968	NA	NA	AGT	frameshift	NA	NA	NA	-1
M6_p20	chr19	7097161	12A2p6	cell line	sgMsh2	7097161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	135	0	0	NA	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.C20T:p.A7V	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	3	0.5650353	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8071840	12A2p6	cell line	sgMsh2	8071840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	649	0	0	NA	exonic	Slc22a28	nonsynonymous SNV	Slc22a28:NM_001013820:exon6:c.A1043G:p.N348S	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.432059195	3	0.9977912	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8161659	12A2p6	cell line	sgMsh2	8161659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	253	0	0	NA	exonic	Slc22a29	nonsynonymous SNV	Slc22a29:NM_172776:exon9:c.T1438C:p.F480L	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.450844377	3	0.5456508	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8386728	12A2p6	cell line	sgMsh2	8386728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	252	0	0	NA	exonic	Slc22a30	nonsynonymous SNV	Slc22a30:NM_177002:exon3:c.T583C:p.S195P	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.474325855	2	0.8858032	GAG	nonsynonymous	GGAG	8	GGAGGGAG	NA
M6_p20	chr19	8764999	12A2p6	cell line	sgMsh2	8764999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	221	0	0	NA	exonic	Nxf1	synonymous SNV	"Nxf1:NM_001276704:exon10:c.T981C:p.C327C,Nxf1:NM_016813:exon10:c.T981C:p.C327C"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999503	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr19	8773595	12A2p6	cell line	sgMsh2	8773595	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	64	0	0	NA	exonic	Tmem179b	nonsynonymous SNV	Tmem179b:NM_026325:exon2:c.T194A:p.F65Y	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.633999905	2	0.8782024	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	541	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.380399943	3	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.105	94	0	0	NA	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.493111037	2	0.8636632	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	8907247	12A2p6	cell line	sgMsh2	8907247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	221	0	0	NA	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon5:c.T413C:p.V138A,Ganab:NM_008060:exon5:c.T413C:p.V138A"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.464933264	2	0.7498096	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	9003288	12A2p6	cell line	sgMsh2	9003288	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	246	0	0	NA	exonic	Ahnak	synonymous SNV	Ahnak:NM_009643:exon5:c.A1935G:p.E645E	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.366311056	3	0.9996614	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	9004009	12A2p6	cell line	sgMsh2	9004009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	328	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A2656G:p.M886V	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.605822132	2	0.9999992	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	9015943	12A2p6	cell line	sgMsh2	9015943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	146	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A14590G:p.M4864V	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.483718446	2	0.8793213	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10054643	12A2p6	cell line	sgMsh2	10054643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	310	0	0	NA	exonic	Fads3	nonsynonymous SNV	Fads3:NM_021890:exon6:c.A797G:p.H266R	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.23481478	3	1.01E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10503010	12A2p6	cell line	sgMsh2	10503010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	258	0	0	NA	exonic	Sdhaf2	nonsynonymous SNV	Sdhaf2:NM_025333:exon4:c.A484C:p.K162Q	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.427362899	3	0.922826	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10664259	12A2p6	cell line	sgMsh2	10664259	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	56	0	0	NA	exonic	Vwce	frameshift deletion	Vwce:NM_027913:exon20:c.2348delT:p.L784fs*0	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr19	10723153	12A2p6	cell line	sgMsh2	10723153	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	90	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon6:c.C986G:p.T329R	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.812459138	1	0.8940806	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10726376	12A2p6	cell line	sgMsh2	10726376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	264	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon3:c.A321C:p.Q107H	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.558859176	2	0.9999727	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10918761	12A2p6	cell line	sgMsh2	10918761	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	222	0	0	NA	exonic	Zp1	nonsynonymous SNV	Zp1:NM_009580:exon3:c.T599G:p.V200G	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.23481478	3	1.43E-08	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	10940395	12A2p6	cell line	sgMsh2	10940395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	142	0	0	NA	exonic	Ptgdr2	nonsynonymous SNV	Ptgdr2:NM_009962:exon3:c.T275A:p.V92E	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.535377698	2	0.9909899	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	188	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.248903666	3	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	165	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.328740692	3	0.9994318	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	11333263	12A2p6	cell line	sgMsh2	11333263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	265	0	0	NA	exonic	Ms4a7	nonsynonymous SNV	"Ms4a7:NM_001025610:exon2:c.T91C:p.Y31H,Ms4a7:NM_001276398:exon2:c.T190C:p.Y64H,Ms4a7:NM_027836:exon2:c.T91C:p.Y31H"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.624607314	2	0.9999396	TAT	nonsynonymous	TATG	9	TATGTATGT	NA
M6_p20	chr19	11977986	12A2p6	cell line	sgMsh2	11977986	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.095	62	0	0	NA	exonic	Osbp	nonsynonymous SNV	Osbp:NM_001033174:exon4:c.C1001A:p.A334D	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.446148081	2	0.5861227	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	11978656	12A2p6	cell line	sgMsh2	11978656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	559	0	0	NA	exonic	Osbp	nonsynonymous SNV	Osbp:NM_001033174:exon6:c.G1144A:p.A382T	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.338133283	3	1.01E-09	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12210204	12A2p6	cell line	sgMsh2	12210204	T	C	SNV	Mutect2;MuSe;Vardict	3	0.154	171	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.T637C:p.L213L	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.723229521	2	0.7109318	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	12241072	12A2p6	cell line	sgMsh2	12241072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	396	0	0	NA	exonic	Olfr262	synonymous SNV	Olfr262:NM_146688:exon1:c.A588G:p.V196V	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.479022151	2	0.9716762	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr19	12422509	12A2p6	cell line	sgMsh2	12422509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	415	0	0	NA	exonic	Olfr1441	synonymous SNV	Olfr1441:NM_146683:exon1:c.C199T:p.L67L	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.530681402	2	0.9999921	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr19	12463289	12A2p6	cell line	sgMsh2	12463289	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	291	0	0	NA	exonic	Mpeg1	nonsynonymous SNV	"Mpeg1:NM_001374668:exon2:c.T2089G:p.L697V,Mpeg1:NM_010821:exon2:c.T2089G:p.L697V"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.530681402	2	0.9997834	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12587011	12A2p6	cell line	sgMsh2	12587011	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	234	0	0	NA	exonic	Fam111a	nonsynonymous SNV	"Fam111a:NM_001346545:exon3:c.A123C:p.K41N,Fam111a:NM_026640:exon4:c.A255C:p.K85N"	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.216029597	3	1.92E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12719168	12A2p6	cell line	sgMsh2	12719168	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	201	0	0	NA	exonic	Keg1	nonsynonymous SNV	Keg1:NM_029550:exon6:c.T874C:p.C292R	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.864118389	1	0.9996031	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12778971	12A2p6	cell line	sgMsh2	12778971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	251	0	0	NA	exonic	Zfp91	nonsynonymous SNV	Zfp91:NM_053009:exon3:c.A508G:p.T170A	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.479022151	2	0.9232256	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.048	740	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.225422188	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	12935450	12A2p6	cell line	sgMsh2	12935450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	587	0	0	NA	exonic	Olfr1449	synonymous SNV	Olfr1449:NM_146303:exon1:c.C711A:p.A237A	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.67157027	2	0.9999978	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Vardict	2	0.061	387	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.286474031	NA	NA	CTA	frameshift	NA	NA	NA	-1
M6_p20	chr19	13165429	12A2p6	cell line	sgMsh2	13165429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	617	0	0	NA	exonic	Olfr1461	synonymous SNV	Olfr1461:NM_146302:exon1:c.T414C:p.T138T	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.563555471	2	1.02E-09	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	13364838	12A2p6	cell line	sgMsh2	13364838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	291	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T209G:p.F70C	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.507199924	2	0.9971681	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13445599	12A2p6	cell line	sgMsh2	13445599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	1191	0	0	NA	exonic	Olfr1471	nonsynonymous SNV	Olfr1471:NM_207132:exon1:c.A586G:p.T196A	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.521288811	2	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13453837	12A2p6	cell line	sgMsh2	13453837	G	A	SNV	Mutect2;MuSe;Vardict	3	0.071	697	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.C679T:p.R227C	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.333436987	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Vardict	2	0.041	706	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.192548119	3	1	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M6_p20	chr19	13502951	12A2p6	cell line	sgMsh2	13502951	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	782	0	0	NA	exonic	Olfr1477	stopgain	Olfr1477:NM_146696:exon2:c.G607T:p.G203X	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.305259214	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13633547	12A2p6	cell line	sgMsh2	13633547	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	609	0	0	NA	exonic	Olfr1489	synonymous SNV	Olfr1489:NM_146635:exon1:c.T435C:p.G145G	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.493111037	2	0.9997531	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Vardict	2	0.063	254	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr19	13705333	12A2p6	cell line	sgMsh2	13705333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	523	0	0	NA	exonic	Olfr1491	nonsynonymous SNV	Olfr1491:NM_146345:exon1:c.A505G:p.T169A	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.27708144	3	1	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13838751	12A2p6	cell line	sgMsh2	13838751	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	403	0	0	NA	exonic	Olfr1501	nonsynonymous SNV	Olfr1501:NM_146633:exon1:c.C421A:p.L141M	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.568251767	2	3.75E-08	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	13919786	12A2p6	cell line	sgMsh2	13919786	C	T	SNV	Mutect2;MuSe;Vardict	3	0.118	662	0	0	NA	exonic	Olfr1505	synonymous SNV	Olfr1505:NM_001011850:exon1:c.C765T:p.L255L	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.55416288	2	1.03E-09	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	276	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.648088792	2	0.9996917	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	394	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999998	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	16691883	12A2p6	cell line	sgMsh2	16691883	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	202	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon35:c.G3963A:p.Q1321Q	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999947	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr19	16754360	12A2p6	cell line	sgMsh2	16754360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	189	0	0	NA	exonic	Vps13a	nonsynonymous SNV	Vps13a:NM_173028:exon6:c.A387C:p.E129D	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.615214723	2	0.9994055	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	17395292	12A2p6	cell line	sgMsh2	17395292	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	393	0	0	NA	exonic	Rfk	nonsynonymous SNV	Rfk:NM_019437:exon2:c.T177A:p.H59Q	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	2	0.8931754	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	17565335	12A2p6	cell line	sgMsh2	17565335	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	306	0	0	NA	exonic	Pcsk5	synonymous SNV	"Pcsk5:NM_001163144:exon18:c.C2319T:p.C773C,Pcsk5:NM_001190483:exon18:c.C2319T:p.C773C"	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.464933264	2	0.7792261	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr19	18642183	12A2p6	cell line	sgMsh2	18642183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	219	0	0	NA	exonic	Nmrk1	synonymous SNV	Nmrk1:NM_145497:exon7:c.A399G:p.V133V	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.525985106	2	0.9978249	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr19	18854182	12A2p6	cell line	sgMsh2	18854182	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	305	0	0	NA	exonic	Trpm6	synonymous SNV	Trpm6:NM_153417:exon26:c.T4410C:p.D1470D	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.530681402	2	0.9998509	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	308	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.309955509	3	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	20804657	12A2p6	cell line	sgMsh2	20804657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	809	0	0	NA	exonic	Tmc1	nonsynonymous SNV	Tmc1:NM_028953:exon16:c.A1696G:p.T566A	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.59642954	2	1	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	21417045	12A2p6	cell line	sgMsh2	21417045	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	567	0	0	NA	exonic	Gda	nonsynonymous SNV	Gda:NM_010266:exon7:c.G669T:p.M223I	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.43675549	3	0.9859781	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.124	61	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.582340654	2	0.9221363	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	23350619	12A2p6	cell line	sgMsh2	23350619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	286	0	0	NA	exonic	Mamdc2	nonsynonymous SNV	Mamdc2:NM_174857:exon9:c.A1384G:p.K462E	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.51189622	2	0.9981312	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	23708921	12A2p6	cell line	sgMsh2	23708921	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	117	0	0	NA	exonic	Ptar1	nonsynonymous SNV	Ptar1:NM_028208:exon5:c.C596T:p.S199F	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.723229521	2	0.6373457	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	25158466	12A2p6	cell line	sgMsh2	25158466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	168	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon29:c.A3647G:p.Y1216C	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.643392496	2	0.9939661	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	25171612	12A2p6	cell line	sgMsh2	25171612	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	121	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon35:c.A4453G:p.T1485A	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.366311056	3	0.9731057	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	25409129	12A2p6	cell line	sgMsh2	25409129	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	223	0	0	NA	exonic	Kank1	synonymous SNV	"Kank1:NM_001348180:exon5:c.G81A:p.K27K,Kank1:NM_181404:exon5:c.G81A:p.K27K"	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.385096239	3	0.9963265	AGA	synonymous	AAAG	9	AAAGAAAGA	NA
M6_p20	chr19	25409764	12A2p6	cell line	sgMsh2	25409764	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	183	0	0	NA	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon5:c.T716C:p.V239A,Kank1:NM_181404:exon5:c.T716C:p.V239A"	19qB	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	2	0.9915369	GTC	nonsynonymous	TCCG	8	TCCGTCCG	NA
M6_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	286	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.958044301	1	4.29E-09	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr19	29311810	12A2p6	cell line	sgMsh2	29311810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	229	0	0	NA	exonic	Jak2	nonsynonymous SNV	"Jak2:NM_001048177:exon24:c.C3361T:p.L1121F,Jak2:NM_008413:exon25:c.C3361T:p.L1121F"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.55416288	2	0.999849	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	29373657	12A2p6	cell line	sgMsh2	29373657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	383	0	0	NA	exonic	Cd274	nonsynonymous SNV	Cd274:NM_021893:exon3:c.T152G:p.L51R	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.619911018	2	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	346	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.211333302	3	1.00E-09	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	29579778	12A2p6	cell line	sgMsh2	29579778	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	229	0	0	NA	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon12:c.A1262G:p.Q421R	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.305259214	3	0.9999968	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	110	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.43675549	3	0.5703251	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr19	29754369	12A2p6	cell line	sgMsh2	29754369	C	T	SNV	Mutect2;Strelka2	2	0.038	151	0	0	NA	exonic	9930021J03Rik	synonymous SNV	9930021J03Rik:NM_172836:exon3:c.G1443A:p.V481V	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.178459233	3	0.9999998	GCA	synonymous	NA	NA	NA	NA
M6_p20	chr19	29952834	12A2p6	cell line	sgMsh2	29952834	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	273	0	0	NA	exonic	Il33	nonsynonymous SNV	"Il33:NM_001164724:exon4:c.A328C:p.I110L,Il33:NM_133775:exon4:c.A328C:p.I110L,Il33:NM_001360725:exon5:c.A328C:p.I110L"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.619911018	2	0.99997	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	29958921	12A2p6	cell line	sgMsh2	29958921	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	96	0	0	NA	exonic	Il33	synonymous SNV	"Il33:NM_001164724:exon8:c.T681C:p.V227V,Il33:NM_133775:exon8:c.T681C:p.V227V,Il33:NM_001360725:exon9:c.T681C:p.V227V"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.408577717	3	0.7649835	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	30075201	12A2p6	cell line	sgMsh2	30075201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	349	0	0	NA	exonic	Uhrf2	nonsynonymous SNV	Uhrf2:NM_144873:exon6:c.A1094G:p.E365G	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999956	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	30087253	12A2p6	cell line	sgMsh2	30087253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	208	0	0	NA	exonic	Uhrf2	synonymous SNV	Uhrf2:NM_144873:exon12:c.T1848C:p.V616V	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.662177679	2	0.9941134	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr19	30624734	12A2p6	cell line	sgMsh2	30624734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	293	0	0	NA	exonic	Prkg1	nonsynonymous SNV	"Prkg1:NM_001013833:exon10:c.A1076G:p.D359G,Prkg1:NM_011160:exon10:c.A1121G:p.D374G"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999672	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	32498438	12A2p6	cell line	sgMsh2	32498438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	195	0	0	NA	exonic	Minpp1	nonsynonymous SNV	Minpp1:NM_010799:exon4:c.A970G:p.T324A	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.516592515	2	0.9921616	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	33514261	12A2p6	cell line	sgMsh2	33514261	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	550	0	0	NA	exonic	Lipo4	synonymous SNV	Lipo4:NM_001323386:exon3:c.A315G:p.A105A	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.55416288	2	2.67E-09	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Vardict	2	0.044	616	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.206637006	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	33782196	12A2p6	cell line	sgMsh2	33782196	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	81	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon5:c.T639A:p.A213A	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.845333207	1	0.9412977	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	496	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.248903666	3	1	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	34039172	12A2p6	cell line	sgMsh2	34039172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	200	0	0	NA	exonic	Lipk	nonsynonymous SNV	"Lipk:NM_001205349:exon7:c.A799G:p.S267G,Lipk:NM_172837:exon7:c.A784G:p.S262G"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.652785087	2	0.9959986	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	34112943	12A2p6	cell line	sgMsh2	34112943	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	412	0	0	NA	exonic	Lipm	nonsynonymous SNV	Lipm:NM_023903:exon5:c.A523G:p.T175A	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.23481478	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	34236304	12A2p6	cell line	sgMsh2	34236304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	527	0	0	NA	exonic	Stambpl1	nonsynonymous SNV	"Stambpl1:NM_001360720:exon4:c.T434C:p.V145A,Stambpl1:NM_001360716:exon8:c.T932C:p.V311A,Stambpl1:NM_001360718:exon8:c.T932C:p.V311A,Stambpl1:NM_001360719:exon8:c.T932C:p.V311A,Stambpl1:NM_029682:exon8:c.T932C:p.V311A,Stambpl1:NM_001360717:exon9:c.T932C:p.V311A"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.474325855	2	0.972089	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Vardict	2	0.112	169	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.525985106	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M6_p20	chr19	34629749	12A2p6	cell line	sgMsh2	34629749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	593	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon1:c.T11C:p.L4P,Ifit1bl2:NM_053217:exon2:c.T11C:p.L4P"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.582340654	2	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	34950647	12A2p6	cell line	sgMsh2	34950647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	168	0	0	NA	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon19:c.T3188C:p.L1063P,Kif20b:NM_183046:exon19:c.T3308C:p.L1103P"	19qC1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.455540673	2	0.5990227	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	149	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.488414742	2	0.09308092	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	37550485	12A2p6	cell line	sgMsh2	37550485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	14	0	0	NA	exonic	Exoc6	synonymous SNV	Exoc6:NM_175353:exon1:c.T21G:p.A7A	19qC2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	2	1	1	0.7804278	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr19	37954506	12A2p6	cell line	sgMsh2	37954506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	215	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon22:c.A2123G:p.Q708R,Myof:NM_001302140:exon23:c.A2162G:p.Q721R"	19qC2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.737318408	2	0.5547343	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	38097293	12A2p6	cell line	sgMsh2	38097293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	189	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T167C:p.L56P	19qC2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	3	7.55E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	415	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999982	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	275	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.328740692	3	0.9999975	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	38795525	12A2p6	cell line	sgMsh2	38795525	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	738	0	0	NA	exonic	Noc3l	nonsynonymous SNV	Noc3l:NM_021315:exon16:c.T1738C:p.Y580H	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	2	3.76E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	39031345	12A2p6	cell line	sgMsh2	39031345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	106	0	0	NA	exonic	Cyp2c55	synonymous SNV	Cyp2c55:NM_028089:exon5:c.T726C:p.S242S	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.582340654	2	0.9907236	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	39087723	12A2p6	cell line	sgMsh2	39087723	A	G	SNV	Mutect2;MuSe;Vardict	3	0.099	570	0	0	NA	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon7:c.A1118G:p.D373G	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.464933264	2	0.8543552	GAC	nonsynonymous	CGTGA	10	CGTGACGTGA	NA
M6_p20	chr19	39290827	12A2p6	cell line	sgMsh2	39290827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	487	0	0	NA	exonic	Cyp2c29	nonsynonymous SNV	Cyp2c29:NM_007815:exon2:c.T267G:p.D89E	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.479022151	2	0.9851271	ATC	nonsynonymous	TGAT	8	TGATTGAT	NA
M6_p20	chr19	39638726	12A2p6	cell line	sgMsh2	39638726	G	T	SNV	Mutect2;Vardict	2	0.111	77	0	0	NA	exonic	Cyp2c67	nonsynonymous SNV	Cyp2c67:NM_001024719:exon5:c.C659A:p.P220H	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.521288811	2	0.9162954	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	39877590	12A2p6	cell line	sgMsh2	39877590	A	G	SNV	Mutect2;MuSe;Vardict	3	0.066	371	0	0	NA	exonic	Cyp2c69	synonymous SNV	Cyp2c69:NM_001104525:exon4:c.T558C:p.R186R	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.309955509	3	2.58E-09	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	40001830	12A2p6	cell line	sgMsh2	40001830	A	G	SNV	Mutect2;Vardict	2	0.062	494	0	0	NA	exonic	Cyp2c37	nonsynonymous SNV	Cyp2c37:NM_010001:exon7:c.A971G:p.Q324R	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.291170327	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	40046198	12A2p6	cell line	sgMsh2	40046198	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	769	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon7:c.A1027C:p.S343R	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.615214723	2	1.00E-09	CTC	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M6_p20	chr19	40912760	12A2p6	cell line	sgMsh2	40912760	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	138	0	0	NA	exonic	Zfp518a	nonsynonymous SNV	Zfp518a:NM_028319:exon5:c.T1132G:p.C378G	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.479022151	2	0.8415721	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	40916015	12A2p6	cell line	sgMsh2	40916015	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	119	0	0	NA	exonic	Zfp518a	stopgain	Zfp518a:NM_028319:exon5:c.G4387T:p.G1463X	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.347525874	3	0.9873823	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	310	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.652785087	2	0.9998235	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	41232352	12A2p6	cell line	sgMsh2	41232352	A	-	Deletion	Mutect2;Vardict	2	0.094	238	0	0	NA	exonic	Tm9sf3	frameshift deletion	Tm9sf3:NM_133352:exon9:c.1170delT:p.F390Lfs*17	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.441451786	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr19	41256264	12A2p6	cell line	sgMsh2	41256264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	236	0	0	NA	exonic	Tm9sf3	nonsynonymous SNV	Tm9sf3:NM_133352:exon2:c.A173G:p.Y58C	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.450844377	3	0.531367	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	41302604	12A2p6	cell line	sgMsh2	41302604	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	216	0	0	NA	exonic	Pik3ap1	synonymous SNV	Pik3ap1:NM_031376:exon10:c.A1488G:p.K496K	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.333436987	3	0.9999328	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	41600584	12A2p6	cell line	sgMsh2	41600584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.154	34	0	0	NA	exonic	Slit1	nonsynonymous SNV	Slit1:NM_015748:exon37:c.C4463T:p.A1488V	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.723229521	2	0.008883933	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	41981112	12A2p6	cell line	sgMsh2	41981112	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	52	0	0	NA	exonic	Mms19	nonsynonymous SNV	"Mms19:NM_001373946:exon1:c.T2G:p.M1R,Mms19:NM_028152:exon1:c.T2G:p.M1R"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.878207276	1	0.9151597	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42031952	12A2p6	cell line	sgMsh2	42031952	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	229	0	0	NA	exonic	Ubtd1	nonsynonymous SNV	Ubtd1:NM_145500:exon2:c.G134A:p.G45E	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999986	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42039911	12A2p6	cell line	sgMsh2	42039911	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	105	0	0	NA	exonic	Ankrd2	nonsynonymous SNV	Ankrd2:NM_020033:exon2:c.A149T:p.K50M	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	2	1	1	0.9998271	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42124970	12A2p6	cell line	sgMsh2	42124970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	80	0	0	NA	exonic	Avpi1	nonsynonymous SNV	Avpi1:NM_027106:exon2:c.T47C:p.V16A	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.746710999	1	0.5641111	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42299222	12A2p6	cell line	sgMsh2	42299222	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.105	95	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon9:c.A1136T:p.H379L,Crtac1:NM_001356589:exon9:c.A1154T:p.H385L,Crtac1:NM_145123:exon9:c.A1154T:p.H385L"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.493111037	2	0.8651667	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42414026	12A2p6	cell line	sgMsh2	42414026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	224	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon2:c.T124G:p.Y42D,Crtac1:NM_001356589:exon2:c.T142G:p.Y48D,Crtac1:NM_145123:exon2:c.T142G:p.Y48D"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.798370251	1	0.9832217	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	42767263	12A2p6	cell line	sgMsh2	42767263	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	130	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon6:c.A523G:p.I175V,Hps1:NM_001346703:exon7:c.A523G:p.I175V,Hps1:NM_019424:exon7:c.A523G:p.I175V"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.403881421	3	0.8875813	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	43493730	12A2p6	cell line	sgMsh2	43493730	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.109	79	0	0	NA	exonic	Cnnm1	nonsynonymous SNV	"Cnnm1:NM_031396:exon10:c.A2695T:p.N899Y,Cnnm1:NM_001373992:exon11:c.A2758T:p.N920Y"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.51189622	2	0.09750983	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	43717476	12A2p6	cell line	sgMsh2	43717476	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	0	0	NA	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon8:c.T736G:p.S246A	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.83124432	1	0.9880671	CTC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M6_p20	chr19	43901569	12A2p6	cell line	sgMsh2	43901569	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	79	0	0	NA	exonic	Dnmbp	synonymous SNV	Dnmbp:NM_028029:exon4:c.T1758C:p.D586D	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.516592515	2	0.9103083	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr19	44059158	12A2p6	cell line	sgMsh2	44059158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	326	0	0	NA	exonic	Erlin1	nonsynonymous SNV	"Erlin1:NM_145502:exon5:c.A323G:p.N108S,Erlin1:NM_001164359:exon6:c.A323G:p.N108S,Erlin1:NM_001164360:exon6:c.A323G:p.N108S"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.488414742	2	0.984966	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	44153684	12A2p6	cell line	sgMsh2	44153684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	236	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon9:c.T1634C:p.V545A	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.469629559	2	0.8240203	GAC	nonsynonymous	GAA	17	GAAGAAGACGAAGAAGA	NA
M6_p20	chr19	44973627	12A2p6	cell line	sgMsh2	44973627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	707	0	0	NA	exonic	Slf2	nonsynonymous SNV	"Slf2:NM_001081225:exon17:c.T3242C:p.I1081T,Slf2:NM_172638:exon17:c.T1307C:p.I436T"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.258296258	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	144	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.544770289	2	0.9947813	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	45516106	12A2p6	cell line	sgMsh2	45516106	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	428	0	0	NA	exonic	Btrc	nonsynonymous SNV	"Btrc:NM_001286466:exon9:c.A680C:p.K227T,Btrc:NM_001360127:exon9:c.A1268C:p.K423T,Btrc:NM_009771:exon9:c.A1238C:p.K413T,Btrc:NM_001037758:exon10:c.A1346C:p.K449T,Btrc:NM_001286465:exon10:c.A1346C:p.K449T,Btrc:NM_001360122:exon10:c.A1310C:p.K437T,Btrc:NM_001360126:exon10:c.A1280C:p.K427T,Btrc:NM_001360120:exon11:c.A1388C:p.K463T,Btrc:NM_001360124:exon12:c.A1292C:p.K431T"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.239511075	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	45635833	12A2p6	cell line	sgMsh2	45635833	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.129	39	0	0	NA	exonic	Fbxw4	nonsynonymous SNV	Fbxw4:NM_013907:exon4:c.A571G:p.T191A	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.605822132	2	0.7822082	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	45749141	12A2p6	cell line	sgMsh2	45749141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	65	0	0	NA	exonic	Npm3	synonymous SNV	Npm3:NM_008723:exon2:c.T120C:p.G40G	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.840636911	1	0.896872	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr19	45757977	12A2p6	cell line	sgMsh2	45757977	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	362	0	0	NA	exonic	Oga	synonymous SNV	Oga:NM_023799:exon14:c.A2382G:p.K794K	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.483718446	2	0.9807292	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr19	46005527	12A2p6	cell line	sgMsh2	46005527	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	66	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A1902C:p.K634N	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.572948062	2	0.9388991	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	46083586	12A2p6	cell line	sgMsh2	46083586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	169	0	0	NA	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon11:c.T1811C:p.V604A,Nolc1:NM_001039352:exon11:c.T1817C:p.V606A,Nolc1:NM_001039353:exon11:c.T1814C:p.V605A,Nolc1:NM_053086:exon11:c.T1814C:p.V605A"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.356918465	3	0.9972036	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	46271825	12A2p6	cell line	sgMsh2	46271825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	192	0	0	NA	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon26:c.A3331G:p.I1111V	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.591733245	2	0.9998375	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	46320954	12A2p6	cell line	sgMsh2	46320954	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.088	135	0	0	NA	exonic	Psd	synonymous SNV	"Psd:NM_001347454:exon7:c.C1566A:p.P522P,Psd:NM_028627:exon7:c.C1563A:p.P521P"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.413274012	3	0.8447635	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr19	46585712	12A2p6	cell line	sgMsh2	46585712	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	203	0	0	NA	exonic	Sfxn2	nonsynonymous SNV	Sfxn2:NM_053196:exon4:c.C340T:p.P114S	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.272385144	3	0.9999988	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47021911	12A2p6	cell line	sgMsh2	47021911	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	307	0	0	NA	exonic	Ina	nonsynonymous SNV	Ina:NM_146100:exon2:c.T1144G:p.L382V	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999956	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47071000	12A2p6	cell line	sgMsh2	47071000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	319	0	0	NA	exonic	Taf5	synonymous SNV	Taf5:NM_177342:exon2:c.A582G:p.E194E	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.516592515	2	0.9994427	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	426	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.878207276	1	1.22E-08	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47102587	12A2p6	cell line	sgMsh2	47102587	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	101	0	0	NA	exonic	Pdcd11	synonymous SNV	Pdcd11:NM_011053:exon9:c.C999T:p.C333C	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.770192477	1	0.7368021	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr19	47129189	12A2p6	cell line	sgMsh2	47129189	A	-	Deletion	Mutect2;Vardict	2	0.069	158	0	0	NA	exonic	Pdcd11	frameshift deletion	Pdcd11:NM_011053:exon33:c.4976delA:p.N1660Tfs*8	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.324044396	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr19	47133166	12A2p6	cell line	sgMsh2	47133166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	94	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon3:c.G563A:p.G188E	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.934562823	1	0.9970855	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47135722	12A2p6	cell line	sgMsh2	47135722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	136	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T182C:p.I61T	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.615214723	2	0.9948968	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47135782	12A2p6	cell line	sgMsh2	47135782	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	155	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T122C:p.V41A	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.262992553	3	0.9999799	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	116	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.638696201	2	0.9743638	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	333	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.704444339	2	0.9797269	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47733582	12A2p6	cell line	sgMsh2	47733582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	373	0	0	NA	exonic	Sfr1	nonsynonymous SNV	Sfr1:NM_026377:exon3:c.A436G:p.S146G	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.572948062	2	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	47986451	12A2p6	cell line	sgMsh2	47986451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	138	0	0	NA	exonic	Cfap58	nonsynonymous SNV	Cfap58:NM_001163267:exon14:c.T2050C:p.Y684H	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.676266565	2	0.939082	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	48802727	12A2p6	cell line	sgMsh2	48802727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	312	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon26:c.T3513C:p.S1171S	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.356918465	3	0.999989	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr19	50222223	12A2p6	cell line	sgMsh2	50222223	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	246	0	0	NA	exonic	Sorcs1	stopgain	"Sorcs1:NM_001252501:exon17:c.G2203T:p.E735X,Sorcs1:NM_001290356:exon17:c.G2203T:p.E735X,Sorcs1:NM_001360457:exon17:c.G2203T:p.E735X,Sorcs1:NM_021377:exon17:c.G2203T:p.E735X"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.624607314	2	0.9998773	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	50228253	12A2p6	cell line	sgMsh2	50228253	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	430	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon14:c.A1887T:p.P629P,Sorcs1:NM_001290356:exon14:c.A1887T:p.P629P,Sorcs1:NM_001360457:exon14:c.A1887T:p.P629P,Sorcs1:NM_021377:exon14:c.A1887T:p.P629P"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.601125836	2	6.35E-09	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr19	50232658	12A2p6	cell line	sgMsh2	50232658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	523	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon11:c.C1620T:p.I540I,Sorcs1:NM_001290356:exon11:c.C1620T:p.I540I,Sorcs1:NM_001360457:exon11:c.C1620T:p.I540I,Sorcs1:NM_021377:exon11:c.C1620T:p.I540I"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	2	0.9999991	TGA	synonymous	NA	NA	NA	NA
M6_p20	chr19	50259804	12A2p6	cell line	sgMsh2	50259804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	244	0	0	NA	exonic	Sorcs1	stopgain	"Sorcs1:NM_001252501:exon8:c.C1183T:p.R395X,Sorcs1:NM_001290356:exon8:c.C1183T:p.R395X,Sorcs1:NM_001360457:exon8:c.C1183T:p.R395X,Sorcs1:NM_021377:exon8:c.C1183T:p.R395X"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.657481383	2	0.9983515	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	50313026	12A2p6	cell line	sgMsh2	50313026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	145	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon5:c.C899T:p.A300V,Sorcs1:NM_001290356:exon5:c.C899T:p.A300V,Sorcs1:NM_001360457:exon5:c.C899T:p.A300V,Sorcs1:NM_021377:exon5:c.C899T:p.A300V"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.497807333	2	0.9396939	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	50333459	12A2p6	cell line	sgMsh2	50333459	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	179	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon4:c.G885T:p.K295N,Sorcs1:NM_001290356:exon4:c.G885T:p.K295N,Sorcs1:NM_001360457:exon4:c.G885T:p.K295N,Sorcs1:NM_021377:exon4:c.G885T:p.K295N"	19qD1	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.446148081	3	0.562045	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	53851470	12A2p6	cell line	sgMsh2	53851470	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	122	0	0	NA	exonic	Rbm20	synonymous SNV	Rbm20:NM_001170847:exon11:c.G2889A:p.P963P	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.727925817	2	0.602179	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr19	55278125	12A2p6	cell line	sgMsh2	55278125	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	185	0	0	NA	exonic	Acsl5	synonymous SNV	Acsl5:NM_027976:exon5:c.A375G:p.K125K	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.324044396	3	0.9998473	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr19	55279530	12A2p6	cell line	sgMsh2	55279530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	240	0	0	NA	exonic	Acsl5	nonsynonymous SNV	Acsl5:NM_027976:exon6:c.G499A:p.G167S	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.413274012	3	0.9716583	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	56791006	12A2p6	cell line	sgMsh2	56791006	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	278	0	0	NA	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon16:c.T2711A:p.I904N	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.587036949	2	0.9999978	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	57685672	12A2p6	cell line	sgMsh2	57685672	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	92	0	0	NA	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon12:c.T1938A:p.N646K	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.666873974	2	0.8847318	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	58799428	12A2p6	cell line	sgMsh2	58799428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	291	0	0	NA	exonic	Hspa12a	nonsynonymous SNV	"Hspa12a:NM_175199:exon12:c.A1961G:p.K654R,Hspa12a:NM_001327998:exon13:c.A2015G:p.K672R"	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.408577717	3	0.9929194	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	58962878	12A2p6	cell line	sgMsh2	58962878	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	189	0	0	NA	exonic	Eno4	nonsynonymous SNV	Eno4:NM_178689:exon10:c.A1318T:p.I440F	19qD2	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.375703647	3	0.9951051	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr19	60779455	12A2p6	cell line	sgMsh2	60779455	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	312	0	0	NA	exonic	Eif3a	nonsynonymous SNV	Eif3a:NM_010123:exon5:c.G644A:p.S215N	19qD3	chr19-6054831-61227351	6	4	2	0.93	4.367554902	NA	1	0.530681402	2	0.9998763	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	3186515	12A2p6	cell line	sgMsh2	3186515	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	61	0	0	NA	exonic	Fam171a1	nonsynonymous SNV	"Fam171a1:NM_001081161:exon3:c.G418T:p.G140C,Fam171a1:NM_001310434:exon3:c.G43T:p.G15C,Fam171a1:NM_001347067:exon3:c.G403T:p.G135C,Fam171a1:NM_001361386:exon3:c.G418T:p.G140C"	2qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	171	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9850429	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	3329041	12A2p6	cell line	sgMsh2	3329041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	218	0	0	NA	exonic	Rpp38	stopgain	Rpp38:NM_001013376:exon2:c.A823T:p.K275X	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.972133188	1	0.9999999	TTA	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	4995798	12A2p6	cell line	sgMsh2	4995798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	179	0	0	NA	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.T2081C:p.V694A,Mcm10:NM_027290:exon15:c.T2081C:p.V694A"	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.943955414	1	0.9999898	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	4995802	12A2p6	cell line	sgMsh2	4995802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	179	0	0	NA	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.A2077G:p.T693A,Mcm10:NM_027290:exon15:c.A2077G:p.T693A"	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.408577717	3	0.9416927	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	5902496	12A2p6	cell line	sgMsh2	5902496	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	90	0	0	NA	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon15:c.T2408A:p.V803D	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.6783095	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	5973518	12A2p6	cell line	sgMsh2	5973518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	92	0	0	NA	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon4:c.T1192C:p.Y398H	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.990301	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	6100504	12A2p6	cell line	sgMsh2	6100504	T	C	SNV	Mutect2;Strelka2	2	0.428	8	0	0	NA	exonic	Proser2	synonymous SNV	"Proser2:NM_001159657:exon4:c.A1248G:p.E416E,Proser2:NM_144883:exon4:c.A1248G:p.E416E"	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.6717552	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	10126177	12A2p6	cell line	sgMsh2	10126177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	151	0	0	NA	exonic	Itih2	nonsynonymous SNV	Itih2:NM_010582:exon4:c.A348C:p.K116N	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.953512	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	11226873	12A2p6	cell line	sgMsh2	11226873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	265	0	0	NA	exonic	Prkcq	synonymous SNV	Prkcq:NM_008859:exon2:c.A6G:p.S2S	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999812	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	11494028	12A2p6	cell line	sgMsh2	11494028	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	129	0	0	NA	exonic	Pfkfb3	nonsynonymous SNV	"Pfkfb3:NM_001177752:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177753:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177754:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177755:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177756:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177757:exon2:c.C77T:p.S26F,Pfkfb3:NM_001177758:exon2:c.C17T:p.A6V,Pfkfb3:NM_133232:exon2:c.C77T:p.S26F"	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9894521	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	11586945	12A2p6	cell line	sgMsh2	11586945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	395	0	0	NA	exonic	Rbm17	nonsynonymous SNV	Rbm17:NM_152824:exon10:c.G963T:p.E321D	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.314651805	3	1.82E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	489	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.9883445	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	13444324	12A2p6	cell line	sgMsh2	13444324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	183	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon21:c.A2939G:p.E980G	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	8.17E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	13456616	12A2p6	cell line	sgMsh2	13456616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	233	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon16:c.T2099C:p.L700P	2qA1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9988865	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	14238248	12A2p6	cell line	sgMsh2	14238248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	124	0	0	NA	exonic	Mrc1	nonsynonymous SNV	Mrc1:NM_008625:exon2:c.T184G:p.S62A	2qA2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.615214723	2	0.9916855	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	16357184	12A2p6	cell line	sgMsh2	16357184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	123	0	0	NA	exonic	Plxdc2	nonsynonymous SNV	Plxdc2:NM_026162:exon1:c.T59C:p.F20S	2qA2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9309787	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	102	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9598095	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	19269134	12A2p6	cell line	sgMsh2	19269134	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	90	0	0	NA	exonic	Armc3	synonymous SNV	"Armc3:NM_001081083:exon9:c.A978G:p.G326G,Armc3:NM_001271563:exon9:c.A978G:p.G326G,Armc3:NM_001271564:exon9:c.A978G:p.G326G,Armc3:NM_001271565:exon9:c.A978G:p.G326G"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9181939	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	20859758	12A2p6	cell line	sgMsh2	20859758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	167	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon17:c.A3654C:p.K1218N,Arhgap21:NM_001128084:exon18:c.A3684C:p.K1228N"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9920473	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	21194492	12A2p6	cell line	sgMsh2	21194492	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	40	0	0	NA	exonic	Enkur	frameshift deletion	Enkur:NM_027728:exon3:c.230delA:p.K77Sfs*13	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	180	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.8778642	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	22291860	12A2p6	cell line	sgMsh2	22291860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	210	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon7:c.T664A:p.W222R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9999563	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	22399798	12A2p6	cell line	sgMsh2	22399798	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.128	41	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon18:c.A1964G:p.Q655R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.8023483	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	22826908	12A2p6	cell line	sgMsh2	22826908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	178	0	0	NA	exonic	Apbb1ip	nonsynonymous SNV	Apbb1ip:NM_019456:exon5:c.A521G:p.K174R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.09329749	AAG	nonsynonymous	GAAG	8	GAAGGAAG	NA
M6_p20	chr2	23099671	12A2p6	cell line	sgMsh2	23099671	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	116	0	0	NA	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon9:c.T942A:p.N314K,Acbd5:NM_001102436:exon10:c.T1161A:p.N387K,Acbd5:NM_001102437:exon10:c.T1272A:p.N424K,Acbd5:NM_001102438:exon10:c.T1269A:p.N423K,Acbd5:NM_001355641:exon10:c.T975A:p.N325K,Acbd5:NM_028793:exon10:c.T1164A:p.N388K,Acbd5:NM_001355637:exon11:c.T1305A:p.N435K,Acbd5:NM_001355638:exon11:c.T1302A:p.N434K,Acbd5:NM_001355639:exon11:c.T1194A:p.N398K"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.000991469	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	23110710	12A2p6	cell line	sgMsh2	23110710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	218	0	0	NA	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon11:c.A1134G:p.I378M,Acbd5:NM_001102436:exon12:c.A1353G:p.I451M,Acbd5:NM_001102437:exon12:c.A1464G:p.I488M,Acbd5:NM_001102438:exon12:c.A1461G:p.I487M,Acbd5:NM_001355641:exon12:c.A1167G:p.I389M,Acbd5:NM_028793:exon12:c.A1356G:p.I452M,Acbd5:NM_001355637:exon13:c.A1497G:p.I499M,Acbd5:NM_001355638:exon13:c.A1494G:p.I498M,Acbd5:NM_001355639:exon13:c.A1386G:p.I462M"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.7435399	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	23136890	12A2p6	cell line	sgMsh2	23136890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	210	0	0	NA	exonic	Mastl	nonsynonymous SNV	Mastl:NM_025979:exon7:c.A959G:p.K320R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.450844377	3	0.5094294	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	23181050	12A2p6	cell line	sgMsh2	23181050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	255	0	0	NA	exonic	Yme1l1	nonsynonymous SNV	Yme1l1:NM_013771:exon8:c.T797G:p.L266R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.986222075	1	3.79E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	23537589	12A2p6	cell line	sgMsh2	23537589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	130	0	0	NA	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon6:c.A305G:p.N102S,Spopl:NM_029773:exon6:c.A530G:p.N177S,Spopl:NM_001165997:exon7:c.A305G:p.N102S"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999771	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	24155269	12A2p6	cell line	sgMsh2	24155269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	226	0	0	NA	exonic	Il1f8	synonymous SNV	Il1f8:NM_027163:exon3:c.A132G:p.Q44Q	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	1.07E-08	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	24395019	12A2p6	cell line	sgMsh2	24395019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	94	0	0	NA	exonic	Psd4	synonymous SNV	"Psd4:NM_001355232:exon2:c.A894G:p.V298V,Psd4:NM_177611:exon2:c.A894G:p.V298V,Psd4:NM_001355231:exon3:c.A894G:p.V298V"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.8416868	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	165	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9916861	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	24926891	12A2p6	cell line	sgMsh2	24926891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	62	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T422C:p.I141T,Arrdc1:NM_178408:exon4:c.T422C:p.I141T"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.981525779	1	0.99201	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	144	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.450844377	2	0.5462261	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25021954	12A2p6	cell line	sgMsh2	25021954	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	302	0	0	NA	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon20:c.C2131T:p.L711L	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999989	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.161	57	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.5983805	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25249426	12A2p6	cell line	sgMsh2	25249426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	80	0	0	NA	exonic	Ndor1	nonsynonymous SNV	"Ndor1:NM_001252541:exon5:c.A622G:p.T208A,Ndor1:NM_001082476:exon7:c.A823G:p.T275A,Ndor1:NM_001252542:exon7:c.A616G:p.T206A"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9986935	GTG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr2	25354574	12A2p6	cell line	sgMsh2	25354574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	100	0	0	NA	exonic	Dpp7	nonsynonymous SNV	Dpp7:NM_031843:exon7:c.T794C:p.L265P	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.43675549	3	0.548909	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25355694	12A2p6	cell line	sgMsh2	25355694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	100	0	0	NA	exonic	Dpp7	nonsynonymous SNV	Dpp7:NM_031843:exon4:c.G379T:p.G127C	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.7390424	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25425186	12A2p6	cell line	sgMsh2	25425186	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	102	0	0	NA	exonic	Fut7	nonsynonymous SNV	"Fut7:NM_001177366:exon2:c.T455C:p.L152P,Fut7:NM_001177367:exon3:c.T314C:p.L105P,Fut7:NM_001289455:exon3:c.T314C:p.L105P,Fut7:NM_013524:exon3:c.T314C:p.L105P,Fut7:NM_001289453:exon4:c.T314C:p.L105P,Fut7:NM_001289454:exon4:c.T314C:p.L105P,Fut7:NM_001289456:exon4:c.T314C:p.L105P"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.9281577	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.152	50	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.5717748	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25795180	12A2p6	cell line	sgMsh2	25795180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	166	0	0	NA	exonic	Glt6d1	nonsynonymous SNV	Glt6d1:NM_001039095:exon4:c.A230G:p.N77S	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.99346	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	194	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.974049	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25898394	12A2p6	cell line	sgMsh2	25898394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	87	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon11:c.A1060G:p.M354V,Kcnt1:NM_001145403:exon12:c.A1042G:p.M348V,Kcnt1:NM_175462:exon12:c.A1102G:p.M368V"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9586473	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	25898829	12A2p6	cell line	sgMsh2	25898829	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	108	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon12:c.G1232T:p.R411L,Kcnt1:NM_001145403:exon13:c.G1214T:p.R405L,Kcnt1:NM_175462:exon13:c.G1274T:p.R425L"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9142898	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	26364684	12A2p6	cell line	sgMsh2	26364684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	146	0	0	NA	exonic	Snapc4	nonsynonymous SNV	"Snapc4:NM_172339:exon21:c.C3803T:p.A1268V,Snapc4:NM_001290419:exon22:c.C3533T:p.A1178V"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9656188	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	26996803	12A2p6	cell line	sgMsh2	26996803	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	89	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001290465:exon22:c.G2924A:p.R975H,Adamts13:NM_001001322:exon23:c.G2951A:p.R984H,Adamts13:NM_001290463:exon23:c.G2867A:p.R956H,Adamts13:NM_001290464:exon23:c.G2951A:p.R984H"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.5641244	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	27018384	12A2p6	cell line	sgMsh2	27018384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	128	0	0	NA	exonic	Cacfd1	nonsynonymous SNV	Cacfd1:NM_029862:exon4:c.T329C:p.V110A	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9698328	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	27071924	12A2p6	cell line	sgMsh2	27071924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	130	0	0	NA	exonic	Mymk	nonsynonymous SNV	Mymk:NM_025376:exon1:c.A92G:p.Y31C	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9959704	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	27929453	12A2p6	cell line	sgMsh2	27929453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	137	0	0	NA	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon4:c.A566C:p.K189T	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9965104	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	27986752	12A2p6	cell line	sgMsh2	27986752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	159	0	0	NA	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon29:c.A2462G:p.D821G	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9374047	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	28450778	12A2p6	cell line	sgMsh2	28450778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	52	0	0	NA	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.A419G:p.Y140C,Ppp1r26:NM_001368159:exon4:c.A419G:p.Y140C"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.9875423	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	155	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.854529	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	410	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9999905	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	28962632	12A2p6	cell line	sgMsh2	28962632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	230	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon4:c.G627T:p.K209N	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9952692	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	29065312	12A2p6	cell line	sgMsh2	29065312	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	183	0	0	NA	exonic	Ttf1	nonsynonymous SNV	Ttf1:NM_009442:exon2:c.A687C:p.K229N	2qA3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.6568468	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	29126985	12A2p6	cell line	sgMsh2	29126985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	253	0	0	NA	exonic	Setx	synonymous SNV	Setx:NM_198033:exon3:c.T99C:p.A33A	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9999359	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	29763417	12A2p6	cell line	sgMsh2	29763417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	396	0	0	NA	exonic	Gm13547	nonsynonymous SNV	Gm13547:NM_001177392:exon2:c.C266A:p.P89H	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	1.73E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	29869617	12A2p6	cell line	sgMsh2	29869617	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.177	25	0	0	NA	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon1:c.T80C:p.L27P	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.6992405	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	29996132	12A2p6	cell line	sgMsh2	29996132	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	40	0	0	NA	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177667:exon17:c.C2305T:p.L769F,Sptan1:NM_001177668:exon17:c.C2305T:p.L769F,Sptan1:NM_001309460:exon17:c.C2305T:p.L769F,Sptan1:NM_001369325:exon17:c.C2305T:p.L769F"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9677517	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	30111304	12A2p6	cell line	sgMsh2	30111304	T	C	SNV	Mutect2;Vardict	2	0.188	24	0	0	NA	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon3:c.A187G:p.T63A,Zer1:NM_178694:exon3:c.A187G:p.T63A"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.7704027	GTG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M6_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	34	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	3	1	1	0.9486092	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	30342753	12A2p6	cell line	sgMsh2	30342753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	156	0	0	NA	exonic	Nup188	nonsynonymous SNV	Nup188:NM_198304:exon40:c.A4730G:p.H1577R	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9972837	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	31392146	12A2p6	cell line	sgMsh2	31392146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	145	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon37:c.A5679G:p.E1893E	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.826548024	1	0.9816512	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	31976596	12A2p6	cell line	sgMsh2	31976596	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon2:c.T142A:p.Y48N	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999597	GTA	nonsynonymous	GTATG	10	GTATGGTATG	NA
M6_p20	chr2	31977810	12A2p6	cell line	sgMsh2	31977810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	465	0	0	NA	exonic	Nup214	synonymous SNV	Nup214:NM_172268:exon3:c.T288C:p.H96H	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.969523	ATC	synonymous	NA	NA	NA	NA
M6_p20	chr2	32011035	12A2p6	cell line	sgMsh2	32011035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	552	0	0	NA	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon20:c.T2729C:p.L910P	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	1.05E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	267	0	0	NA	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	1.35E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	267	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	2.15E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	32673367	12A2p6	cell line	sgMsh2	32673367	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.109	83	0	0	NA	exonic	Eng	nonsynonymous SNV	"Eng:NM_001146348:exon7:c.A931G:p.T311A,Eng:NM_001146350:exon7:c.A934G:p.T312A,Eng:NM_007932:exon7:c.A934G:p.T312A"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.09089987	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	32709892	12A2p6	cell line	sgMsh2	32709892	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	84	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.T485A:p.V162D	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9561869	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	33104854	12A2p6	cell line	sgMsh2	33104854	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	118	0	0	NA	exonic	Garnl3	nonsynonymous SNV	"Garnl3:NM_001355200:exon2:c.C262A:p.L88I,Garnl3:NM_001355201:exon2:c.C142A:p.L48I"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.9566733	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	260	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.8815228	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	35006105	12A2p6	cell line	sgMsh2	35006105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	126	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon28:c.T3665C:p.V1222A	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9681212	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	35088812	12A2p6	cell line	sgMsh2	35088812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	158	0	0	NA	exonic	AI182371	nonsynonymous SNV	"AI182371:NM_001243102:exon5:c.T539C:p.V180A,AI182371:NM_001243103:exon5:c.T536C:p.V179A,AI182371:NM_001379434:exon5:c.T539C:p.V180A,AI182371:NM_178885:exon5:c.T536C:p.V179A"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9996013	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	123	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9828465	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	35385643	12A2p6	cell line	sgMsh2	35385643	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	119	0	0	NA	exonic	4930402F06Rik	nonsynonymous SNV	"4930402F06Rik:NM_001272040:exon3:c.A44T:p.Q15L,4930402F06Rik:NM_001080709:exon4:c.A137T:p.Q46L"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.9576911	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	35422190	12A2p6	cell line	sgMsh2	35422190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	188	0	0	NA	exonic	Ggta1	nonsynonymous SNV	"Ggta1:NM_001145821:exon4:c.T175C:p.Y59H,Ggta1:NM_001308299:exon4:c.T175C:p.Y59H,Ggta1:NM_001308300:exon4:c.T175C:p.Y59H,Ggta1:NM_010283:exon4:c.T175C:p.Y59H"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9471919	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36117859	12A2p6	cell line	sgMsh2	36117859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	130	0	0	NA	exonic	Rbm18	nonsynonymous SNV	"Rbm18:NM_001355580:exon5:c.A322G:p.R108G,Rbm18:NM_001159635:exon6:c.A439G:p.R147G,Rbm18:NM_026434:exon6:c.A529G:p.R177G"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.887599867	1	0.997727	CTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	36134192	12A2p6	cell line	sgMsh2	36134192	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	299	0	0	NA	exonic	Rbm18	nonsynonymous SNV	"Rbm18:NM_001159635:exon2:c.G56T:p.G19V,Rbm18:NM_001355578:exon2:c.G56T:p.G19V,Rbm18:NM_001355579:exon2:c.G56T:p.G19V,Rbm18:NM_026434:exon2:c.G56T:p.G19V"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.211333302	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36422142	12A2p6	cell line	sgMsh2	36422142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	725	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.T743C:p.V248A	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	2.34E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36422162	12A2p6	cell line	sgMsh2	36422162	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	623	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.A763T:p.I255F	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.999999	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36640915	12A2p6	cell line	sgMsh2	36640915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	825	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T875C:p.L292P	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	1.03E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36813090	12A2p6	cell line	sgMsh2	36813090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	109	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.A1G:p.M1V	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9998749	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36890485	12A2p6	cell line	sgMsh2	36890485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	547	0	0	NA	exonic	Olfr353	nonsynonymous SNV	Olfr353:NM_146941:exon1:c.A362G:p.Y121C	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9999976	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	36927639	12A2p6	cell line	sgMsh2	36927639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	316	0	0	NA	exonic	Olfr355	synonymous SNV	Olfr355:NM_146625:exon1:c.T474C:p.L158L	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.920473936	1	1.91E-08	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	37005072	12A2p6	cell line	sgMsh2	37005072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	463	0	0	NA	exonic	Olfr358	nonsynonymous SNV	Olfr358:NM_207235:exon1:c.A541G:p.T181A	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	37085712	12A2p6	cell line	sgMsh2	37085712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	216	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T35C:p.F12S	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.9116529	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	162	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9913872	AAC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr2	37790466	12A2p6	cell line	sgMsh2	37790466	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	0	0	NA	exonic	Crb2	nonsynonymous SNV	Crb2:NM_001163566:exon7:c.T1405C:p.F469L	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9918358	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	37800703	12A2p6	cell line	sgMsh2	37800703	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	122	0	0	NA	exonic	Dennd1a	nonsynonymous SNV	"Dennd1a:NM_001362978:exon20:c.A2168T:p.N723I,Dennd1a:NM_001362977:exon21:c.A2288T:p.N763I,Dennd1a:NM_146122:exon22:c.A2384T:p.N795I,Dennd1a:NM_001362973:exon23:c.A2513T:p.N838I"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999563	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	38941653	12A2p6	cell line	sgMsh2	38941653	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	74	0	0	NA	exonic	Olfml2a	synonymous SNV	Olfml2a:NM_172854:exon2:c.T243G:p.T81T	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.952315	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	40601553	12A2p6	cell line	sgMsh2	40601553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	321	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon88:c.T13367C:p.L4456S	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.8770215	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	40677558	12A2p6	cell line	sgMsh2	40677558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	227	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon79:c.A12156C:p.I4052I	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.986222075	1	2.48E-08	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	40927322	12A2p6	cell line	sgMsh2	40927322	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	156	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon45:c.A7392G:p.E2464E	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.230118484	3	0.9999973	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	41123683	12A2p6	cell line	sgMsh2	41123683	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	197	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon36:c.G5809A:p.A1937T	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9996752	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	62	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.413274012	3	0.000749698	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	139	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.5108673	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	61	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	43629042	12A2p6	cell line	sgMsh2	43629042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	123	0	0	NA	exonic	Kynu	synonymous SNV	"Kynu:NM_001289593:exon9:c.T822C:p.C274C,Kynu:NM_001289594:exon9:c.T822C:p.C274C,Kynu:NM_027552:exon9:c.T822C:p.C274C"	2qB	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.887599867	1	0.9968762	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	48917308	12A2p6	cell line	sgMsh2	48917308	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	113	0	0	NA	exonic	Orc4	stopgain	"Orc4:NM_001355296:exon9:c.A610T:p.K204X,Orc4:NM_011958:exon9:c.A610T:p.K204X"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.5736147	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	49256209	12A2p6	cell line	sgMsh2	49256209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	99	0	0	NA	exonic	Mbd5	nonsynonymous SNV	"Mbd5:NM_001290656:exon4:c.A430G:p.T144A,Mbd5:NM_029924:exon11:c.A430G:p.T144A"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9870535	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	52105483	12A2p6	cell line	sgMsh2	52105483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	285	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon24:c.C2713T:p.L905F,Rif1:NM_001355415:exon24:c.C2692T:p.L898F,Rif1:NM_175238:exon24:c.C2713T:p.L905F"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	2.00E-08	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	52116276	12A2p6	cell line	sgMsh2	52116276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	333	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon31:c.T6494C:p.I2165T,Rif1:NM_001355415:exon31:c.T6473C:p.I2158T,Rif1:NM_175238:exon31:c.T6494C:p.I2165T"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.7156689	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	52137428	12A2p6	cell line	sgMsh2	52137428	T	-	Deletion	Mutect2;Vardict	2	0.187	86	0	0	NA	exonic	Neb	frameshift deletion	Neb:NM_010889:exon157:c.21289delA:p.I7097Sfs*7	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.878207276	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr2	52170445	12A2p6	cell line	sgMsh2	52170445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	396	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon134:c.A18924G:p.A6308A	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.09111498	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	367	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.309955509	3	2.98E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	55073920	12A2p6	cell line	sgMsh2	55073920	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	216	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon11:c.A1319G:p.Q440R	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9999189	CAA	nonsynonymous	CAAT	8	CAATCAAT	NA
M6_p20	chr2	55098684	12A2p6	cell line	sgMsh2	55098684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	158	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon12:c.A1517G:p.E506G	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.8792169	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	55437642	12A2p6	cell line	sgMsh2	55437642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	106	0	0	NA	exonic	Kcnj3	nonsynonymous SNV	"Kcnj3:NM_001304810:exon2:c.T442C:p.Y148H,Kcnj3:NM_008426:exon2:c.T442C:p.Y148H,Kcnj3:NM_001355118:exon3:c.T442C:p.Y148H"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9904471	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	58823588	12A2p6	cell line	sgMsh2	58823588	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	317	0	0	NA	exonic	Ccdc148	nonsynonymous SNV	"Ccdc148:NM_001362393:exon14:c.G1634T:p.R545M,Ccdc148:NM_001362394:exon14:c.G1415T:p.R472M,Ccdc148:NM_001001178:exon15:c.G1550T:p.R517M,Ccdc148:NM_001372501:exon15:c.G1766T:p.R589M"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.9999981	CCT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M6_p20	chr2	59308409	12A2p6	cell line	sgMsh2	59308409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	223	0	0	NA	exonic	Pkp4	synonymous SNV	"Pkp4:NM_001362992:exon6:c.A558G:p.S186S,Pkp4:NM_001362990:exon7:c.A996G:p.S332S,Pkp4:NM_001362991:exon7:c.A996G:p.S332S,Pkp4:NM_026361:exon7:c.A1002G:p.S334S,Pkp4:NM_175464:exon7:c.A1002G:p.S334S,Pkp4:NM_001362993:exon8:c.A558G:p.S186S,Pkp4:NM_001362994:exon8:c.A558G:p.S186S,Pkp4:NM_001362995:exon8:c.A558G:p.S186S,Pkp4:NM_001362996:exon8:c.A558G:p.S186S"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	0.9996683	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.116	71	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9374771	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	59790783	12A2p6	cell line	sgMsh2	59790783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	350	0	0	NA	exonic	Tanc1	synonymous SNV	"Tanc1:NM_001290659:exon8:c.T945C:p.S315S,Tanc1:NM_198294:exon9:c.T945C:p.S315S"	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9997323	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	60303594	12A2p6	cell line	sgMsh2	60303594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	211	0	0	NA	exonic	Ly75	synonymous SNV	Ly75:NM_013825:exon32:c.A4686G:p.Q1562Q	2qC1.1	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.958044301	1	0.9999995	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	61764871	12A2p6	cell line	sgMsh2	61764871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	215	0	0	NA	exonic	Psmd14	nonsynonymous SNV	Psmd14:NM_021526:exon7:c.T334C:p.Y112H	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.8637161	GTA	nonsynonymous	GTTG	15	TGGTTGTTGGTTGGT	NA
M6_p20	chr2	62211477	12A2p6	cell line	sgMsh2	62211477	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	152	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242378:exon4:c.T400A:p.W134R,Slc4a10:NM_001242379:exon4:c.T400A:p.W134R,Slc4a10:NM_001242380:exon4:c.T400A:p.W134R,Slc4a10:NM_001242381:exon4:c.T400A:p.W134R,Slc4a10:NM_001242382:exon4:c.T400A:p.W134R,Slc4a10:NM_001242383:exon4:c.T400A:p.W134R,Slc4a10:NM_001362671:exon4:c.T397A:p.W133R,Slc4a10:NM_001362672:exon4:c.T397A:p.W133R,Slc4a10:NM_001362673:exon4:c.T397A:p.W133R,Slc4a10:NM_001362674:exon4:c.T397A:p.W133R,Slc4a10:NM_001362675:exon4:c.T397A:p.W133R,Slc4a10:NM_001362676:exon4:c.T397A:p.W133R,Slc4a10:NM_033552:exon4:c.T400A:p.W134R"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999961	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	62478687	12A2p6	cell line	sgMsh2	62478687	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	118	0	0	NA	exonic	Gcg	nonsynonymous SNV	Gcg:NM_008100:exon3:c.A122G:p.H41R	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999396	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	62611711	12A2p6	cell line	sgMsh2	62611711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	86	0	0	NA	exonic	Ifih1	synonymous SNV	"Ifih1:NM_001164477:exon5:c.A1161G:p.S387S,Ifih1:NM_027835:exon6:c.A1308G:p.S436S"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9648072	CTG	synonymous	CCAA	10	CCAACCAACC	NA
M6_p20	chr2	62635163	12A2p6	cell line	sgMsh2	62635163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	199	0	0	NA	exonic	Ifih1	nonsynonymous SNV	Ifih1:NM_027835:exon3:c.A662G:p.N221S	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9992914	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	63978844	12A2p6	cell line	sgMsh2	63978844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	229	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.C2081T:p.A694V,Fign:NM_001267846:exon4:c.C2048T:p.A683V,Fign:NM_001267847:exon4:c.C2048T:p.A683V"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.99091837	1	1.56E-08	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	63979031	12A2p6	cell line	sgMsh2	63979031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	212	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A1894G:p.K632E,Fign:NM_001267846:exon4:c.A1861G:p.K621E,Fign:NM_001267847:exon4:c.A1861G:p.K621E"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.9940335	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	121	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.911081345	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M6_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	243	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999989	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	65497488	12A2p6	cell line	sgMsh2	65497488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	608	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon16:c.T2804C:p.I935T,Scn3a:NM_001355167:exon16:c.T2753C:p.I918T,Scn3a:NM_001355168:exon16:c.T2666C:p.I889T,Scn3a:NM_001355169:exon16:c.T2666C:p.I889T,Scn3a:NM_001355170:exon16:c.T2657C:p.I886T,Scn3a:NM_001355171:exon16:c.T899C:p.I300T,Scn3a:NM_018732:exon16:c.T2657C:p.I886T"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.9355318	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	65717806	12A2p6	cell line	sgMsh2	65717806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	204	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346679:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346680:exon17:c.A3341G:p.D1114G"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.967436892	1	0.9999995	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	65763800	12A2p6	cell line	sgMsh2	65763800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	298	0	0	NA	exonic	Scn2a	synonymous SNV	"Scn2a:NM_001099298:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346679:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346680:exon27:c.C4992T:p.I1664I"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.9991953	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr2	65763849	12A2p6	cell line	sgMsh2	65763849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	340	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346679:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346680:exon27:c.T5041C:p.S1681P"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5149299	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	66107064	12A2p6	cell line	sgMsh2	66107064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	107	0	0	NA	exonic	Galnt3	nonsynonymous SNV	Galnt3:NM_015736:exon2:c.T301C:p.Y101H	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9903608	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	66536237	12A2p6	cell line	sgMsh2	66536237	T	-	Deletion	Mutect2;Vardict	2	0.159	128	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon14:c.2201delA:p.K734Sfs*6,Scn9a:NM_001290675:exon14:c.2168delA:p.K723Sfs*6"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.746710999	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	66565105	12A2p6	cell line	sgMsh2	66565105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	52	0	0	NA	exonic	Scn9a	synonymous SNV	"Scn9a:NM_001290674:exon5:c.T594C:p.F198F,Scn9a:NM_001290675:exon5:c.T594C:p.F198F"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9875423	CAA	synonymous	A	5	AAAAA	NA
M6_p20	chr2	66676137	12A2p6	cell line	sgMsh2	66676137	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.144	70	0	0	NA	exonic	Scn7a	synonymous SNV	Scn7a:NM_009135:exon25:c.T4407C:p.P1469P	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.7858994	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Vardict	2	0.071	359	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.333436987	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr2	67513258	12A2p6	cell line	sgMsh2	67513258	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	51	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.5842delA:p.N1949Mfs*19,Xirp2:NM_001083919:exon7:c.5842delA:p.N1949Mfs*19"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr2	67514993	12A2p6	cell line	sgMsh2	67514993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	77	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7577G:p.K2526R,Xirp2:NM_001083919:exon7:c.A7577G:p.K2526R"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.6583316	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	67516356	12A2p6	cell line	sgMsh2	67516356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	98	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A8940G:p.I2980M,Xirp2:NM_001083919:exon7:c.A8940G:p.I2980M"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996953	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	67516432	12A2p6	cell line	sgMsh2	67516432	-	A	Insertion	Mutect2;Vardict	2	0.121	84	0	0	NA	exonic	Xirp2	frameshift insertion	"Xirp2:NM_001024618:exon7:c.9017dupA:p.T3008Nfs*6,Xirp2:NM_001083919:exon7:c.9017dupA:p.T3008Nfs*5"	2qC1.3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.568251767	NA	NA	AGA	frameshift	A	5	AAAAA	1
M6_p20	chr2	69152395	12A2p6	cell line	sgMsh2	69152395	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	129	0	0	NA	exonic	Nostrin	nonsynonymous SNV	Nostrin:NM_181547:exon3:c.A174C:p.K58N	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9983746	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	69156162	12A2p6	cell line	sgMsh2	69156162	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	153	0	0	NA	exonic	Nostrin	nonsynonymous SNV	Nostrin:NM_181547:exon4:c.G247A:p.A83T	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9904605	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	69202618	12A2p6	cell line	sgMsh2	69202618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	265	0	0	NA	exonic	Spc25	synonymous SNV	"Spc25:NM_025565:exon3:c.T162A:p.T54T,Spc25:NM_001199123:exon4:c.T306A:p.T102T,Spc25:NM_001199124:exon4:c.T306A:p.T102T,Spc25:NM_001305800:exon4:c.T306A:p.T102T"	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.9917215	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	337	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9999274	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	69483852	12A2p6	cell line	sgMsh2	69483852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	71	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6534C:p.N2178N	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.8061591	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	71421695	12A2p6	cell line	sgMsh2	71421695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	103	0	0	NA	exonic	Hat1	nonsynonymous SNV	Hat1:NM_026115:exon8:c.T770C:p.V257A	2qC2	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9312544	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	71853577	12A2p6	cell line	sgMsh2	71853577	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	234	0	0	NA	exonic	Itga6	nonsynonymous SNV	Itga6:NM_008397:exon25:c.C3158T:p.T1053I	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.39448883	3	0.993848	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	73356701	12A2p6	cell line	sgMsh2	73356701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	167	0	0	NA	exonic	Gpr155	synonymous SNV	"Gpr155:NM_001276444:exon11:c.T1683C:p.S561S,Gpr155:NM_001190297:exon12:c.T1767C:p.S589S,Gpr155:NM_001276443:exon12:c.T1767C:p.S589S"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	8.18E-09	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	73568222	12A2p6	cell line	sgMsh2	73568222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	260	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon7:c.T872C:p.V291A	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	1.62E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2	2	0.298	10	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.7127846	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	74876455	12A2p6	cell line	sgMsh2	74876455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	80	0	0	NA	exonic	Mtx2	nonsynonymous SNV	Mtx2:NM_016804:exon10:c.G773A:p.G258D	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.8742175	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	75891847	12A2p6	cell line	sgMsh2	75891847	A	-	Deletion	Mutect2;Vardict	2	0.208	52	0	0	NA	exonic	Agps	frameshift deletion	Agps:NM_172666:exon13:c.1380delA:p.K462Sfs*14	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.976829483	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr2	76375434	12A2p6	cell line	sgMsh2	76375434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	93	0	0	NA	exonic	Rbm45	nonsynonymous SNV	Rbm45:NM_153405:exon4:c.A629G:p.Q210R	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	0.9995434	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76379058	12A2p6	cell line	sgMsh2	76379058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	100	0	0	NA	exonic	Rbm45	synonymous SNV	Rbm45:NM_153405:exon8:c.A1215G:p.L405L	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9773966	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	76591882	12A2p6	cell line	sgMsh2	76591882	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	78	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon22:c.A2382C:p.G794G,Osbpl6:NM_001290733:exon24:c.A2475C:p.G825G,Osbpl6:NM_145525:exon24:c.A2499C:p.G833G"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9296125	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	90	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.999418	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr2	76636823	12A2p6	cell line	sgMsh2	76636823	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	154	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon6:c.A581C:p.N194T	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9817004	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76711137	12A2p6	cell line	sgMsh2	76711137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	192	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A76523G:p.Y25508C,Ttn:NM_011652:exon307:c.A96266G:p.Y32089C,Ttn:NM_001385708:exon344:c.A102098G:p.Y34033C"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9998375	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76713049	12A2p6	cell line	sgMsh2	76713049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	145	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A74611G:p.T24871A,Ttn:NM_011652:exon307:c.A94354G:p.T31452A,Ttn:NM_001385708:exon344:c.A100186G:p.T33396A"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.994949	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76713536	12A2p6	cell line	sgMsh2	76713536	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	261	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon186:c.A74124G:p.E24708E,Ttn:NM_011652:exon307:c.A93867G:p.E31289E,Ttn:NM_001385708:exon344:c.A99699G:p.E33233E"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.244207371	3	2.23E-09	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	76728398	12A2p6	cell line	sgMsh2	76728398	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	204	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon164:c.A64157G:p.Y21386C,Ttn:NM_011652:exon285:c.A83900G:p.Y27967C,Ttn:NM_001385708:exon322:c.A89732G:p.Y29911C"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.258296258	3	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76732118	12A2p6	cell line	sgMsh2	76732118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	256	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon160:c.61401delA:p.K20467Nfs*38,Ttn:NM_011652:exon281:c.81144delA:p.K27048Nfs*38,Ttn:NM_001385708:exon318:c.86976delA:p.K28992Nfs*38"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.803066546	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	76739135	12A2p6	cell line	sgMsh2	76739135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	176	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A56432G:p.K18811R,Ttn:NM_011652:exon275:c.A76175G:p.K25392R,Ttn:NM_001385708:exon312:c.A82007G:p.K27336R"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9963714	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76744270	12A2p6	cell line	sgMsh2	76744270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	261	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon154:c.A51297G:p.V17099V,Ttn:NM_011652:exon275:c.A71040G:p.V23680V,Ttn:NM_001385708:exon312:c.A76872G:p.V25624V"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9992903	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	76754106	12A2p6	cell line	sgMsh2	76754106	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	321	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon152:c.A41676G:p.S13892S,Ttn:NM_011652:exon273:c.A61419G:p.S20473S,Ttn:NM_001385708:exon310:c.A67251G:p.S22417S"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9994637	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	76768907	12A2p6	cell line	sgMsh2	76768907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	372	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon131:c.A32776C:p.N10926H,Ttn:NM_011652:exon252:c.A52519C:p.N17507H,Ttn:NM_001385708:exon289:c.A58351C:p.N19451H"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	2.25E-08	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	76776268	12A2p6	cell line	sgMsh2	76776268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	435	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon118:c.A29316G:p.A9772A,Ttn:NM_011652:exon239:c.A49059G:p.A16353A,Ttn:NM_001385708:exon276:c.A54891G:p.A18297A"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9999973	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	76778035	12A2p6	cell line	sgMsh2	76778035	T	-	Deletion	Mutect2;Vardict	2	0.19	61	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon116:c.28562delA:p.K9521Rfs*23,Ttn:NM_011652:exon237:c.48305delA:p.K16102Rfs*23,Ttn:NM_001385708:exon274:c.54137delA:p.K18046Rfs*23"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.892296163	NA	NA	CTT	frameshift	TTCT	10	TTCTTTCTTT	-1
M6_p20	chr2	76782226	12A2p6	cell line	sgMsh2	76782226	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	538	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon107:c.T26527C:p.S8843P,Ttn:NM_011652:exon228:c.T46270C:p.S15424P,Ttn:NM_001385708:exon265:c.T52102C:p.S17368P"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.216029597	3	1	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76789931	12A2p6	cell line	sgMsh2	76789931	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	128	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon93:c.A22578C:p.G7526G,Ttn:NM_011652:exon214:c.A42321C:p.G14107G,Ttn:NM_001385708:exon251:c.A48153C:p.G16051G"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999731	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr2	76808646	12A2p6	cell line	sgMsh2	76808646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	86	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon66:c.A16710G:p.K5570K,Ttn:NM_011652:exon187:c.A36453G:p.K12151K,Ttn:NM_001385708:exon224:c.A42285G:p.K14095K"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9853392	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	76810340	12A2p6	cell line	sgMsh2	76810340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	269	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.A16082G:p.K5361R,Ttn:NM_011652:exon184:c.A35825G:p.K11942R,Ttn:NM_001385708:exon221:c.A41657G:p.K13886R"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.5784162	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76810518	12A2p6	cell line	sgMsh2	76810518	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	171	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.C15904A:p.L5302I,Ttn:NM_011652:exon184:c.C35647A:p.L11883I,Ttn:NM_001385708:exon221:c.C41479A:p.L13827I"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9957258	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76810937	12A2p6	cell line	sgMsh2	76810937	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	102	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon61:c.A15743C:p.K5248T,Ttn:NM_011652:exon182:c.A35486C:p.K11829T,Ttn:NM_001385708:exon219:c.A41318C:p.K13773T"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.9961794	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76811367	12A2p6	cell line	sgMsh2	76811367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	349	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon60:c.A15403G:p.T5135A,Ttn:NM_011652:exon181:c.A35146G:p.T11716A,Ttn:NM_001385708:exon218:c.A40978G:p.T13660A"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9999926	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76813481	12A2p6	cell line	sgMsh2	76813481	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	240	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon55:c.C14421T:p.I4807I,Ttn:NM_011652:exon176:c.C34164T:p.I11388I,Ttn:NM_001385708:exon213:c.C39996T:p.I13332I"	2qC3	chr2-3197272-76814467	5	3	2	0.93	4.367554902	NA	1	1	1	4.11E-09	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr2	76822458	12A2p6	cell line	sgMsh2	76822458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	153	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon166:c.A32832G:p.Q10944Q,Ttn:NM_001385708:exon203:c.A38664G:p.Q12888Q"	2qC3	chr2-76814468-76867310	3	NA	NA	0.93	4.367554902	NA	NA	0.746710999	1	0.585036	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	76856849	12A2p6	cell line	sgMsh2	76856849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	91	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon123:c.A28392G:p.K9464K,Ttn:NM_001385708:exon125:c.A31449G:p.K10483K"	2qC3	chr2-76814468-76867310	3	NA	NA	0.93	4.367554902	NA	NA	0.835940616	1	0.9441655	GTT	synonymous	T	5	TTTTT	NA
M6_p20	chr2	76945268	12A2p6	cell line	sgMsh2	76945268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	188	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon27:c.T5429C:p.V1810A,Ttn:NM_001385708:exon28:c.T5567C:p.V1856A,Ttn:NM_011652:exon28:c.T5567C:p.V1856A"	2qC3	chr2-76867311-82253895	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.5949551	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	249	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-82253895	5	3	2	0.93	4.367554902	NA	1	1	1	2.50E-09	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	77015131	12A2p6	cell line	sgMsh2	77015131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	116	0	0	NA	exonic	Ccdc141	synonymous SNV	Ccdc141:NM_001025576:exon23:c.T3591C:p.L1197L	2qC3	chr2-76867311-82253895	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.9136313	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	306	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-76867311-82253895	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	2.40E-09	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	82979003	12A2p6	cell line	sgMsh2	82979003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	918	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.T5659C:p.L1887L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.638696201	2	1.00E-09	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	82983323	12A2p6	cell line	sgMsh2	82983323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	322	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.G9979T:p.A3327S	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	2	0.9997042	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	82990389	12A2p6	cell line	sgMsh2	82990389	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	263	0	0	NA	exonic	Fsip2	stopgain	Fsip2:NM_001370266:exon17:c.G16459T:p.G5487X	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.540073993	2	0.9998196	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	82990519	12A2p6	cell line	sgMsh2	82990519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	779	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16589G:p.Q5530R	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.469629559	2	0.9720506	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	82992429	12A2p6	cell line	sgMsh2	82992429	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	170	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T18499A:p.S6167T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.39448883	3	0.9709767	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	83803240	12A2p6	cell line	sgMsh2	83803240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	274	0	0	NA	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3040T:p.M1014L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.422666603	3	0.9593604	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	83803275	12A2p6	cell line	sgMsh2	83803275	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	309	0	0	NA	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3075C:p.E1025D	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.474325855	2	0.9137152	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	365	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.460236968	2	0.6746286	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	84612086	12A2p6	cell line	sgMsh2	84612086	T	-	Deletion	Mutect2;Vardict	2	0.171	137	0	0	NA	exonic	Ctnnd1	frameshift deletion	"Ctnnd1:NM_001085449:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001355067:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001085453:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001355066:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001085448:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001085450:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355064:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355065:exon12:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_007615:exon12:c.1901delA:p.K634Sfs*47"	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.803066546	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	84675459	12A2p6	cell line	sgMsh2	84675459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	589	0	0	NA	exonic	Tmx2	synonymous SNV	"Tmx2:NM_001290751:exon3:c.C273T:p.P91P,Tmx2:NM_025868:exon5:c.C387T:p.P129P"	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.450844377	3	0.7890473	GGG	synonymous	G	5	GGGGG	NA
M6_p20	chr2	84849786	12A2p6	cell line	sgMsh2	84849786	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	100	0	0	NA	exonic	Slc43a1	nonsynonymous SNV	"Slc43a1:NM_001083809:exon2:c.T353C:p.L118P,Slc43a1:NM_001081349:exon3:c.T404C:p.L135P,Slc43a1:NM_024497:exon3:c.T275C:p.L92P"	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.427362899	3	0.6341314	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85054346	12A2p6	cell line	sgMsh2	85054346	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	405	0	0	NA	exonic	Tnks1bp1	synonymous SNV	Tnks1bp1:NM_001081260:exon4:c.T789C:p.P263P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.516592515	2	0.9999113	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	85399824	12A2p6	cell line	sgMsh2	85399824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	562	0	0	NA	exonic	Olfr992	synonymous SNV	Olfr992:NM_146865:exon1:c.A708G:p.K236K	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.450844377	3	0.7734509	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	427	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.43675549	3	0.9542128	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	85647893	12A2p6	cell line	sgMsh2	85647893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	853	0	0	NA	exonic	Olfr1002	stopgain	Olfr1002:NM_146573:exon1:c.C427T:p.Q143X	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.540073993	2	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85648049	12A2p6	cell line	sgMsh2	85648049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	390	0	0	NA	exonic	Olfr1002	nonsynonymous SNV	Olfr1002:NM_146573:exon1:c.G271A:p.V91M	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.483718446	2	0.9849566	ACC	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	729	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.601125836	2	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	85754028	12A2p6	cell line	sgMsh2	85754028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	321	0	0	NA	exonic	Olfr1010	nonsynonymous SNV	Olfr1010:NM_207149:exon3:c.T658C:p.F220L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	2	0.997075	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	571	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	2	2.07E-08	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85770150	12A2p6	cell line	sgMsh2	85770150	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	429	0	0	NA	exonic	Olfr1013	synonymous SNV	Olfr1013:NM_146762:exon1:c.C348A:p.A116A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	2	0.9994832	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	259	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.732622113	2	0.6640635	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85799569	12A2p6	cell line	sgMsh2	85799569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	452	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A700G:p.M234V	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.497807333	2	0.999206	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85799973	12A2p6	cell line	sgMsh2	85799973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	369	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A296T:p.Q99L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	2	0.9904844	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85800215	12A2p6	cell line	sgMsh2	85800215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	575	0	0	NA	exonic	Olfr1016	synonymous SNV	Olfr1016:NM_001011758:exon1:c.T54C:p.S18S	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.474325855	2	0.9783861	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	85868829	12A2p6	cell line	sgMsh2	85868829	-	A	Insertion	Mutect2;Vardict	2	0.094	1170	0	0	NA	exonic	Olfr1022	frameshift insertion	Olfr1022:NM_146589:exon1:c.237dupA:p.N80Kfs*31	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.441451786	NA	NA	CCA	frameshift	NA	NA	NA	1
M6_p20	chr2	85904396	12A2p6	cell line	sgMsh2	85904396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	173	0	0	NA	exonic	Olfr1024	synonymous SNV	Olfr1024:NM_001005230:exon1:c.C657T:p.I219I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.432059195	3	0.7570211	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr2	85923475	12A2p6	cell line	sgMsh2	85923475	T	C	SNV	Mutect2;MuSe;Vardict	3	0.088	887	0	0	NA	exonic	Olfr1026	nonsynonymous SNV	Olfr1026:NM_146584:exon1:c.T206C:p.V69A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.413274012	3	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	85992807	12A2p6	cell line	sgMsh2	85992807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	232	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A989G:p.Y330C	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	3	0.9996322	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86041816	12A2p6	cell line	sgMsh2	86041816	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.12	947	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G500A:p.C167Y	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.563555471	2	1	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86042133	12A2p6	cell line	sgMsh2	86042133	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	682	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G817A:p.A273T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	2	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86046756	12A2p6	cell line	sgMsh2	86046756	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	739	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.T273G:p.S91S	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	2	1.01E-09	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	86084983	12A2p6	cell line	sgMsh2	86084983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	610	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A793G:p.S265G	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.619911018	2	1.06E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86085539	12A2p6	cell line	sgMsh2	86085539	G	-	Deletion	Mutect2;Vardict	2	0.121	96	0	0	NA	exonic	Olfr1037	frameshift deletion	Olfr1037:NM_001011532:exon1:c.237delC:p.K80Sfs*25	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr2	86131294	12A2p6	cell line	sgMsh2	86131294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	847	0	0	NA	exonic	Olfr1039	nonsynonymous SNV	Olfr1039:NM_001011784:exon1:c.A368G:p.Y123C	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.51189622	2	3.22E-08	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86146018	12A2p6	cell line	sgMsh2	86146018	A	-	Deletion	Mutect2;Vardict	2	0.142	756	0	0	NA	exonic	Olfr1040	frameshift deletion	Olfr1040:NM_207561:exon1:c.715delT:p.S239Pfs*6	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.666873974	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr2	86170923	12A2p6	cell line	sgMsh2	86170923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	362	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.A893C:p.K298T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	2	0.9998828	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86170996	12A2p6	cell line	sgMsh2	86170996	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	393	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G820A:p.A274T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	2	0.9999948	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86181246	12A2p6	cell line	sgMsh2	86181246	-	A	Insertion	Mutect2;Vardict	2	0.131	191	0	0	NA	exonic	Olfr52	frameshift insertion	Olfr52:NM_146583:exon1:c.863dupT:p.L288Ffs*20	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	NA	NA	TCA	frameshift	NA	NA	NA	1
M6_p20	chr2	86198171	12A2p6	cell line	sgMsh2	86198171	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	342	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.C580A:p.L194I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.385096239	3	0.9998705	AGG	nonsynonymous	AGGT	8	AGGTAGGT	NA
M6_p20	chr2	86217371	12A2p6	cell line	sgMsh2	86217371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	693	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.C338A:p.T113N	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	3	0.6095138	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86254820	12A2p6	cell line	sgMsh2	86254820	C	A	SNV	Mutect2;MuSe;Vardict	3	0.105	108	0	0	NA	exonic	Olfr1049	nonsynonymous SNV	Olfr1049:NM_147016:exon1:c.G872T:p.S291I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	2	0.8833266	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86275913	12A2p6	cell line	sgMsh2	86275913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	573	0	0	NA	exonic	Olfr1051	nonsynonymous SNV	Olfr1051:NM_207562:exon1:c.T573G:p.H191Q	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	2	0.9996124	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86275949	12A2p6	cell line	sgMsh2	86275949	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	611	0	0	NA	exonic	Olfr1051	stopgain	Olfr1051:NM_207562:exon1:c.T537A:p.C179X	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	2	1.56E-09	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86298531	12A2p6	cell line	sgMsh2	86298531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	451	0	0	NA	exonic	Olfr1052	nonsynonymous SNV	Olfr1052:NM_147010:exon1:c.C714A:p.F238L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.432059195	3	0.982757	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86332428	12A2p6	cell line	sgMsh2	86332428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	223	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T927A:p.N309K	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.403881421	3	0.9824573	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86332927	12A2p6	cell line	sgMsh2	86332927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	258	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T428C:p.V143A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.432059195	3	0.883408	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86347285	12A2p6	cell line	sgMsh2	86347285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	692	0	0	NA	exonic	Olfr1055	synonymous SNV	"Olfr1055:NM_001310551:exon1:c.T480C:p.I160I,Olfr1055:NM_147021:exon1:c.T480C:p.I160I"	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.446148081	3	0.9474124	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	86374619	12A2p6	cell line	sgMsh2	86374619	A	C	SNV	Mutect2;MuSe;Vardict	3	0.114	917	0	0	NA	exonic	Olfr1057	synonymous SNV	Olfr1057:NM_207563:exon1:c.T792G:p.T264T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	2	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Vardict	2	0.052	644	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.244207371	3	1	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	86413272	12A2p6	cell line	sgMsh2	86413272	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	487	0	0	NA	exonic	Olfr1061	stopgain	Olfr1061:NM_207134:exon1:c.T779A:p.L260X	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.507199924	2	0.999914	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86423263	12A2p6	cell line	sgMsh2	86423263	G	A	SNV	Mutect2;MuSe;Vardict	3	0.108	904	0	0	NA	exonic	Olfr1062	stopgain	Olfr1062:NM_147078:exon1:c.C412T:p.R138X	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.507199924	2	5.15E-08	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86483115	12A2p6	cell line	sgMsh2	86483115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	190	0	0	NA	exonic	Olfr228	nonsynonymous SNV	Olfr228:NM_146405:exon1:c.C626A:p.T209N	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.601125836	2	0.9997367	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86657968	12A2p6	cell line	sgMsh2	86657968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	581	0	0	NA	exonic	Olfr1085	synonymous SNV	Olfr1085:NM_146590:exon1:c.A489G:p.L163L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.718533226	2	0.9867526	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr2	86732789	12A2p6	cell line	sgMsh2	86732789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	355	0	0	NA	exonic	Olfr1089	synonymous SNV	Olfr1089:NM_001011771:exon1:c.A822G:p.A274A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	2	0.9999997	ATG	synonymous	GATG	8	GATGGATG	NA
M6_p20	chr2	86753861	12A2p6	cell line	sgMsh2	86753861	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	420	0	0	NA	exonic	Olfr1090	synonymous SNV	Olfr1090:NM_146847:exon1:c.G876A:p.L292L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	3	0.5012509	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr2	86829125	12A2p6	cell line	sgMsh2	86829125	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	577	0	0	NA	exonic	Olfr1094	synonymous SNV	Olfr1094:NM_146365:exon1:c.C372T:p.C124C	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.460236968	2	0.6818366	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr2	86829277	12A2p6	cell line	sgMsh2	86829277	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	604	0	0	NA	exonic	Olfr1094	nonsynonymous SNV	Olfr1094:NM_146365:exon1:c.C524A:p.T175N	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	2	0.999969	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86890262	12A2p6	cell line	sgMsh2	86890262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	212	0	0	NA	exonic	Olfr1097	synonymous SNV	Olfr1097:NM_146843:exon2:c.T912C:p.V304V	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.516592515	2	0.9945374	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	86890419	12A2p6	cell line	sgMsh2	86890419	T	C	SNV	Mutect2;MuSe;Vardict	3	0.124	335	0	0	NA	exonic	Olfr1097	nonsynonymous SNV	Olfr1097:NM_146843:exon2:c.A755G:p.Y252C	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.582340654	2	0.9999999	ATA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr2	86923173	12A2p6	cell line	sgMsh2	86923173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	567	0	0	NA	exonic	Olfr1098	nonsynonymous SNV	Olfr1098:NM_146845:exon1:c.T358C:p.Y120H	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.51189622	2	0.9999924	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	86958907	12A2p6	cell line	sgMsh2	86958907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	348	0	0	NA	exonic	Olfr1099	nonsynonymous SNV	Olfr1099:NM_146768:exon1:c.C550T:p.L184F	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.540073993	2	0.9999862	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87002062	12A2p6	cell line	sgMsh2	87002062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	661	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.A92G:p.D31G	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.380399943	3	6.08E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87092592	12A2p6	cell line	sgMsh2	87092592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	439	0	0	NA	exonic	Olfr1109	nonsynonymous SNV	Olfr1109:NM_146766:exon1:c.G804T:p.M268I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	2	9.38E-09	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87136044	12A2p6	cell line	sgMsh2	87136044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	513	0	0	NA	exonic	Olfr1110	synonymous SNV	Olfr1110:NM_146769:exon2:c.T276C:p.S92S	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.408577717	3	0.9999017	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	87149894	12A2p6	cell line	sgMsh2	87149894	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	228	0	0	NA	exonic	Olfr1111	nonsynonymous SNV	Olfr1111:NM_146593:exon1:c.C766A:p.L256M	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.587036949	2	0.9999746	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	440	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.305259214	3	1.01E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87212904	12A2p6	cell line	sgMsh2	87212904	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	307	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.A11T:p.K4I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	2	0.9999723	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87252590	12A2p6	cell line	sgMsh2	87252590	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	846	0	0	NA	exonic	Olfr1115	nonsynonymous SNV	Olfr1115:NM_146297:exon1:c.G652C:p.V218L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.55416288	2	1.00E-09	TGT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	87252877	12A2p6	cell line	sgMsh2	87252877	-	G	Insertion	Mutect2;Vardict	2	0.091	143	0	0	NA	exonic	Olfr1115	frameshift insertion	Olfr1115:NM_146297:exon1:c.940dupG:p.A315Gfs*15	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.427362899	NA	NA	CAG	frameshift	NA	NA	NA	1
M6_p20	chr2	87418564	12A2p6	cell line	sgMsh2	87418564	A	-	Deletion	Mutect2;Vardict	2	0.089	542	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.515delA:p.T173Hfs*34	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr2	87457588	12A2p6	cell line	sgMsh2	87457588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	566	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.T422C:p.V141A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	2	1.05E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87489731	12A2p6	cell line	sgMsh2	87489731	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	299	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon3:c.A1217T:p.Q406L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999991	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87491385	12A2p6	cell line	sgMsh2	87491385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	239	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.T305C:p.V102A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.446148081	3	0.6360931	AAC	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr2	87575824	12A2p6	cell line	sgMsh2	87575824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	632	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.T739C:p.C247R	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.568251767	2	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87645506	12A2p6	cell line	sgMsh2	87645506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	1058	0	0	NA	exonic	Olfr1133	nonsynonymous SNV	Olfr1133:NM_146351:exon1:c.T616G:p.C206G	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	2	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.252	348	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	2	1	NA	NA	CAT	frameshift	NA	NA	NA	1
M6_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	317	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.605822132	2	0.9999987	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	87802800	12A2p6	cell line	sgMsh2	87802800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	431	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.C410T:p.T137I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.530681402	2	0.9999948	ACA	nonsynonymous	AACA	8	AACAAACA	NA
M6_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	444	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.760799886	1	0.9342789	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87833305	12A2p6	cell line	sgMsh2	87833305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	407	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T265C:p.F89L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.558859176	2	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87833436	12A2p6	cell line	sgMsh2	87833436	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	660	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.A396G:p.I132M	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	2	1.35E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	559	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	2	4.26E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87943158	12A2p6	cell line	sgMsh2	87943158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	216	0	0	NA	exonic	Olfr1155	nonsynonymous SNV	Olfr1155:NM_146643:exon1:c.T469C:p.C157R	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.619911018	2	0.9997264	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87961977	12A2p6	cell line	sgMsh2	87961977	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	419	0	0	NA	exonic	Olfr1157	nonsynonymous SNV	Olfr1157:NM_146849:exon2:c.T914A:p.V305E	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.516592515	2	0.9999343	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	323	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	2	0.896992458	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88006235	12A2p6	cell line	sgMsh2	88006235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	735	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.T542C:p.V181A	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.572948062	2	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	593	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	2	2.50E-08	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88070610	12A2p6	cell line	sgMsh2	88070610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	369	0	0	NA	exonic	Olfr1163	nonsynonymous SNV	Olfr1163:NM_146644:exon1:c.A771G:p.I257M	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.493111037	2	0.9950225	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88185810	12A2p6	cell line	sgMsh2	88185810	C	T	SNV	Mutect2;Vardict	2	0.08	116	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.C932T:p.T311I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.375703647	3	0.9526741	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	1211	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.483718446	2	0.9999905	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;MuSe;Vardict	3	0.111	486	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	2	0.9999934	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	88339906	12A2p6	cell line	sgMsh2	88339906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	513	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.T340C:p.F114L	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.483718446	2	0.9949758	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88339985	12A2p6	cell line	sgMsh2	88339985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	577	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A419G:p.K140R	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.483718446	2	0.9971691	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88340206	12A2p6	cell line	sgMsh2	88340206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	716	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.A640G:p.I214V	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.507199924	2	0.9999986	TAT	nonsynonymous	ATC	8	ATCATCAT	NA
M6_p20	chr2	88391383	12A2p6	cell line	sgMsh2	88391383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	663	0	0	NA	exonic	Olfr1178	synonymous SNV	Olfr1178:NM_001011868:exon1:c.T135C:p.I45I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.540073993	2	2.02E-09	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	88392008	12A2p6	cell line	sgMsh2	88392008	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	359	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.T760A:p.F254I	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	2	0.9984097	GTT	nonsynonymous	TTTA	8	TTTATTTA	NA
M6_p20	chr2	88402653	12A2p6	cell line	sgMsh2	88402653	T	-	Deletion	Mutect2;Vardict	2	0.077	274	0	0	NA	exonic	Olfr1179	frameshift deletion	Olfr1179:NM_146917:exon1:c.280delA:p.S94Afs*21	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr2	88412415	12A2p6	cell line	sgMsh2	88412415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	364	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.T242C:p.L81P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.676266565	2	0.9994385	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88423567	12A2p6	cell line	sgMsh2	88423567	G	T	SNV	Mutect2;MuSe;Vardict	3	0.086	561	0	0	NA	exonic	Olfr1181	nonsynonymous SNV	Olfr1181:NM_001011816:exon1:c.C457A:p.H153N	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.403881421	3	0.9999856	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88446554	12A2p6	cell line	sgMsh2	88446554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	460	0	0	NA	exonic	Olfr1182	nonsynonymous SNV	Olfr1182:NM_001011535:exon3:c.T383C:p.L128P	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.464933264	2	0.8259949	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88525797	12A2p6	cell line	sgMsh2	88525797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	489	0	0	NA	exonic	Olfr1186	synonymous SNV	Olfr1186:NM_146530:exon1:c.T213C:p.S71S	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.540073993	2	0.9999998	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	88682960	12A2p6	cell line	sgMsh2	88682960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	451	0	0	NA	exonic	Olfr1195	synonymous SNV	Olfr1195:NM_146753:exon1:c.A771G:p.T257T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.558859176	2	2.63E-08	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	386	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	2	0.9999913	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88700603	12A2p6	cell line	sgMsh2	88700603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	372	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T725C:p.I242T	2qD	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.709140635	2	0.978145	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;MuSe;Vardict	3	0.088	617	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.413274012	3	0.9999607	CTA	synonymous	ACT	8	ACTACTAC	NA
M6_p20	chr2	88746012	12A2p6	cell line	sgMsh2	88746012	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	638	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.A875C:p.K292T	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.727925817	2	0.9459619	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Vardict	2	0.048	633	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.225422188	3	1	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	88756087	12A2p6	cell line	sgMsh2	88756087	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	406	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.T587G:p.L196R,Olfr1199:NM_146458:exon2:c.T587G:p.L196R"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.497807333	2	0.998468	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88767954	12A2p6	cell line	sgMsh2	88767954	G	T	SNV	Mutect2;MuSe;Vardict	3	0.126	614	0	0	NA	exonic	Olfr1200	synonymous SNV	Olfr1200:NM_001005227:exon1:c.C360A:p.R120R	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.591733245	2	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr2	88896799	12A2p6	cell line	sgMsh2	88896799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	634	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.A797G:p.K266R	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	2	1.79E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88929666	12A2p6	cell line	sgMsh2	88929666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	774	0	0	NA	exonic	Olfr1211	synonymous SNV	Olfr1211:NM_001011804:exon1:c.C648T:p.S216S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.469629559	2	0.9715446	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	88929956	12A2p6	cell line	sgMsh2	88929956	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	640	0	0	NA	exonic	Olfr1211	nonsynonymous SNV	Olfr1211:NM_001011804:exon1:c.G358A:p.D120N	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.3193481	3	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88959354	12A2p6	cell line	sgMsh2	88959354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	149	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.C887T:p.A296V	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.530681402	2	0.9904569	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88973316	12A2p6	cell line	sgMsh2	88973316	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	534	0	0	NA	exonic	Olfr1213	nonsynonymous SNV	Olfr1213:NM_146898:exon3:c.T574A:p.Y192N	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.516592515	2	0.9999944	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	395	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999999	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	89001870	12A2p6	cell line	sgMsh2	89001870	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	377	0	0	NA	exonic	Olfr1215	synonymous SNV	Olfr1215:NM_146459:exon1:c.C417A:p.L139L	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.544770289	2	0.999997	AGA	synonymous	NA	NA	NA	NA
M6_p20	chr2	89002089	12A2p6	cell line	sgMsh2	89002089	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	466	0	0	NA	exonic	Olfr1215	synonymous SNV	Olfr1215:NM_146459:exon1:c.C198T:p.S66S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999997	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	89112330	12A2p6	cell line	sgMsh2	89112330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	977	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T181C:p.F61L	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.549466584	2	1.00E-09	AAG	nonsynonymous	AAG	9	AAGAAGAAG	NA
M6_p20	chr2	89112332	12A2p6	cell line	sgMsh2	89112332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	975	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T179C:p.F60S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.455540673	3	0.7109595	GAA	nonsynonymous	AAG	9	AAGAAGAAG	NA
M6_p20	chr2	89249319	12A2p6	cell line	sgMsh2	89249319	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	526	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.T374G:p.I125S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.59642954	2	1.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89249377	12A2p6	cell line	sgMsh2	89249377	-	A	Insertion	Mutect2;Vardict	2	0.046	743	0	0	NA	exonic	Olfr1228	stopgain	Olfr1228:NM_146971:exon1:c.315dupT:p.E106fs*0	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.216029597	NA	NA	TCA	nonsynonymous	NA	NA	NA	1
M6_p20	chr2	89296856	12A2p6	cell line	sgMsh2	89296856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	231	0	0	NA	exonic	Olfr1230	nonsynonymous SNV	Olfr1230:NM_146789:exon1:c.T413C:p.V138A	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.446148081	3	0.6265044	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89339668	12A2p6	cell line	sgMsh2	89339668	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	590	0	0	NA	exonic	Olfr1233	synonymous SNV	Olfr1233:NM_146972:exon2:c.C633A:p.S211S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.507199924	2	0.9999863	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	89362487	12A2p6	cell line	sgMsh2	89362487	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	126	0	0	NA	exonic	Olfr1234	nonsynonymous SNV	Olfr1234:NM_146973:exon1:c.C941A:p.S314Y	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.371007352	3	0.9718545	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89439637	12A2p6	cell line	sgMsh2	89439637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	549	0	0	NA	exonic	Olfr1240	nonsynonymous SNV	Olfr1240:NM_146808:exon1:c.T641C:p.V214A	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.408577717	3	0.9999509	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	518	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.601125836	2	1.10E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89528088	12A2p6	cell line	sgMsh2	89528088	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	297	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.T321G:p.G107G	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.605822132	2	0.9999968	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	89574963	12A2p6	cell line	sgMsh2	89574963	A	-	Deletion	Mutect2;Vardict	2	0.104	243	0	0	NA	exonic	Olfr1245	frameshift deletion	Olfr1245:NM_146788:exon1:c.762delT:p.F254Lfs*26	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.488414742	NA	NA	TAA	frameshift	CATA	8	CATACATA	-1
M6_p20	chr2	89575481	12A2p6	cell line	sgMsh2	89575481	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	404	0	0	NA	exonic	Olfr1245	nonsynonymous SNV	Olfr1245:NM_146788:exon1:c.G244A:p.D82N	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.338133283	3	1.89E-08	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89590257	12A2p6	cell line	sgMsh2	89590257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	147	0	0	NA	exonic	Olfr1246	nonsynonymous SNV	Olfr1246:NM_146792:exon1:c.C857T:p.T286I	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.558859176	2	0.9976477	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89609883	12A2p6	cell line	sgMsh2	89609883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	893	0	0	NA	exonic	Olfr1247	nonsynonymous SNV	Olfr1247:NM_146966:exon1:c.C218A:p.T73N	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.521288811	2	1.54E-09	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	89657283	12A2p6	cell line	sgMsh2	89657283	A	G	SNV	Mutect2;MuSe;Vardict	3	0.1	706	0	0	NA	exonic	Olfr1250	synonymous SNV	Olfr1250:NM_146965:exon1:c.T157C:p.L53L	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.469629559	2	0.9637167	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	89788829	12A2p6	cell line	sgMsh2	89788829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	616	0	0	NA	exonic	Olfr1254	synonymous SNV	Olfr1254:NM_146476:exon1:c.T522C:p.H174H	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	2	1.35E-08	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	312	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.479022151	2	0.9492143	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	90139121	12A2p6	cell line	sgMsh2	90139121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	624	0	0	NA	exonic	Olfr32	nonsynonymous SNV	Olfr32:NM_010980:exon5:c.T17G:p.V6G	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.389792534	3	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	90149482	12A2p6	cell line	sgMsh2	90149482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	480	0	0	NA	exonic	Olfr1270	nonsynonymous SNV	Olfr1270:NM_146985:exon1:c.T523C:p.Y175H	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.62930361	2	4.16E-08	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91063372	12A2p6	cell line	sgMsh2	91063372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	113	0	0	NA	exonic	Slc39a13	synonymous SNV	"Slc39a13:NM_001290765:exon8:c.A897G:p.G299G,Slc39a13:NM_026721:exon8:c.A858G:p.G286G"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.474325855	2	0.7840035	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	545	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	2	1	1	1	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91278916	12A2p6	cell line	sgMsh2	91278916	G	A	SNV	Mutect2;Vardict	2	0.114	54	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	1110051M20Rik:NM_175123:exon9:c.C863T:p.T288I	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.535377698	2	0.09598492	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	286	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.643392496	2	0.9998502	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91556606	12A2p6	cell line	sgMsh2	91556606	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	223	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon5:c.A737T:p.Q246L,Ckap5:NM_001165989:exon6:c.A737T:p.Q246L"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.704444339	2	0.9270827	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91564413	12A2p6	cell line	sgMsh2	91564413	T	-	Deletion	Mutect2;Vardict	2	0.077	549	0	0	NA	exonic	Ckap5	frameshift deletion	"Ckap5:NM_029437:exon11:c.1432delT:p.L479fs*0,Ckap5:NM_001165989:exon12:c.1432delT:p.L479fs*0"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.361614761	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	91585795	12A2p6	cell line	sgMsh2	91585795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	224	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon24:c.A3065G:p.H1022R,Ckap5:NM_001165989:exon25:c.A3065G:p.H1022R"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.417970308	3	0.9457338	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91606329	12A2p6	cell line	sgMsh2	91606329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	642	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.G4773T:p.Q1591H,Ckap5:NM_001165989:exon36:c.G4773T:p.Q1591H"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.525985106	2	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91606343	12A2p6	cell line	sgMsh2	91606343	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	729	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.A4787T:p.Y1596F,Ckap5:NM_001165989:exon36:c.A4787T:p.Y1596F"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.502503628	2	0.9999958	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	91668289	12A2p6	cell line	sgMsh2	91668289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	328	0	0	NA	exonic	Arhgap1	nonsynonymous SNV	"Arhgap1:NM_001145902:exon5:c.T530C:p.L177P,Arhgap1:NM_146124:exon5:c.T410C:p.L137P,Arhgap1:NM_001359970:exon6:c.T410C:p.L137P"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.615214723	2	0.9999978	CTC	nonsynonymous	CCCT	9	CCCTCCCTC	NA
M6_p20	chr2	92953470	12A2p6	cell line	sgMsh2	92953470	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	187	0	0	NA	exonic	Syt13	nonsynonymous SNV	Syt13:NM_030725:exon6:c.T1084G:p.F362V	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.756103591	1	0.7183792	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	93677384	12A2p6	cell line	sgMsh2	93677384	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.11	65	0	0	NA	exonic	Alx4	synonymous SNV	Alx4:NM_007442:exon4:c.T1023A:p.S341S	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.516592515	2	0.878224	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	93704611	12A2p6	cell line	sgMsh2	93704611	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	234	0	0	NA	exonic	Ext2	nonsynonymous SNV	"Ext2:NM_010163:exon12:c.T1807C:p.Y603H,Ext2:NM_001355075:exon13:c.T1852C:p.Y618H"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.399185125	3	0.9907237	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	93841940	12A2p6	cell line	sgMsh2	93841940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	321	0	0	NA	exonic	Accs	synonymous SNV	"Accs:NM_001290782:exon7:c.T582C:p.P194P,Accs:NM_183220:exon7:c.T513C:p.P171P"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.690355452	2	0.9942713	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	94324433	12A2p6	cell line	sgMsh2	94324433	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	420	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon20:c.A2875G:p.T959A,Ttc17:NM_183106:exon21:c.A3046G:p.T1016A"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.220725893	3	1	GTA	nonsynonymous	ATGC	8	ATGCATGC	NA
M6_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	82	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82255917-97631195	7	5	2	0.93	4.367554902	NA	1	0.450844377	2	0.59728	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	103082989	12A2p6	cell line	sgMsh2	103082989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	149	0	0	NA	exonic	Apip	nonsynonymous SNV	"Apip:NM_001355473:exon2:c.T89C:p.L30P,Apip:NM_019735:exon2:c.T89C:p.L30P"	2qE2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.868814685	1	0.9976899	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	104645002	12A2p6	cell line	sgMsh2	104645002	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	exonic	Cstf3	nonsynonymous SNV	Cstf3:NM_145529:exon5:c.G282T:p.K94N	2qE2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	9.83E-07	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	104690590	12A2p6	cell line	sgMsh2	104690590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	135	0	0	NA	exonic	Tcp11l1	nonsynonymous SNV	Tcp11l1:NM_177190:exon6:c.G679A:p.A227T	2qE2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9922592	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	104723147	12A2p6	cell line	sgMsh2	104723147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	831	0	0	NA	exonic	Depdc7	synonymous SNV	Depdc7:NM_144804:exon7:c.A1155G:p.V385V	2qE2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9999828	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	105393690	12A2p6	cell line	sgMsh2	105393690	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	138	0	0	NA	exonic	Rcn1	nonsynonymous SNV	Rcn1:NM_009037:exon3:c.A508C:p.K170Q	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9473342	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	106351587	12A2p6	cell line	sgMsh2	106351587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	102	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon11:c.G540A:p.E180E	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9997796	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	106861512	12A2p6	cell line	sgMsh2	106861512	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	151	0	0	NA	exonic	Mpped2	synonymous SNV	"Mpped2:NM_001356555:exon4:c.C183T:p.G61G,Mpped2:NM_001143683:exon5:c.C561T:p.G187G,Mpped2:NM_001356554:exon5:c.C561T:p.G187G,Mpped2:NM_029837:exon5:c.C561T:p.G187G"	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999958	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	264	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.929866528	1	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	107296814	12A2p6	cell line	sgMsh2	107296814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	111	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A1892G:p.Q631R	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9998936	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	110265593	12A2p6	cell line	sgMsh2	110265593	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	168	0	0	NA	exonic	Bbox1	nonsynonymous SNV	Bbox1:NM_130452:exon7:c.A1025T:p.N342I	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999989	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	110362216	12A2p6	cell line	sgMsh2	110362216	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	148	0	0	NA	exonic	Fibin	nonsynonymous SNV	Fibin:NM_026271:exon1:c.A580T:p.I194F	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	9.19E-07	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	110616679	12A2p6	cell line	sgMsh2	110616679	T	-	Deletion	Mutect2;Vardict	2	0.175	183	0	0	NA	exonic	Slc5a12	frameshift deletion	"Slc5a12:NM_001003915:exon5:c.531delT:p.L178fs*0,Slc5a12:NM_001177624:exon5:c.531delT:p.L178fs*0"	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.821851729	NA	NA	GTT	frameshift	G	6	GGGGGG	-1
M6_p20	chr2	110644386	12A2p6	cell line	sgMsh2	110644386	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	157	0	0	NA	exonic	Slc5a12	nonsynonymous SNV	"Slc5a12:NM_001003915:exon14:c.C1634A:p.P545H,Slc5a12:NM_001177624:exon14:c.C1622A:p.P541H"	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9989531	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111094799	12A2p6	cell line	sgMsh2	111094799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	150	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon57:c.C4094T:p.P1365L	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9979087	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111105990	12A2p6	cell line	sgMsh2	111105990	T	-	Deletion	Mutect2;Vardict	2	0.12	61	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon50:c.3629delA:p.N1210Ifs*31	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.563555471	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr2	111134225	12A2p6	cell line	sgMsh2	111134225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	288	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon38:c.A2819G:p.N940S	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	2.52E-08	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111170296	12A2p6	cell line	sgMsh2	111170296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	277	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon20:c.G1693T:p.A565S	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	1.16E-09	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111190394	12A2p6	cell line	sgMsh2	111190394	-	A	Insertion	Mutect2;Vardict	2	0.201	91	0	0	NA	exonic	A26c3	frameshift insertion	A26c3:NM_001378593:exon17:c.1483dupT:p.S495Ffs*1	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.943955414	NA	NA	AGA	frameshift	A	5	AAAAA	1
M6_p20	chr2	111227935	12A2p6	cell line	sgMsh2	111227935	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	613	0	0	NA	exonic	A26c3	nonsynonymous SNV	"A26c3:NM_001378593:exon3:c.T512C:p.M171T,A26c3:NM_026248:exon3:c.T512C:p.M171T"	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.7073242	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111257558	12A2p6	cell line	sgMsh2	111257558	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	198	0	0	NA	exonic	Olfr1276	nonsynonymous SNV	Olfr1276:NM_146395:exon1:c.G442C:p.A148P	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999997	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	670	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.253599962	3	1	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;MuSe;Vardict	3	0.085	431	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.399185125	3	0.9998958	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M6_p20	chr2	111449611	12A2p6	cell line	sgMsh2	111449611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	1172	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.T470C:p.M157T	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.999975	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	424	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.408577717	3	0.9994527	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	111537775	12A2p6	cell line	sgMsh2	111537775	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	448	0	0	NA	exonic	Olfr1294	synonymous SNV	Olfr1294:NM_146885:exon1:c.C513A:p.P171P	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	1.04E-09	TGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	111537918	12A2p6	cell line	sgMsh2	111537918	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	627	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.G370C:p.V124L	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.8612983	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	301	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.23481478	3	1.02E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	112071871	12A2p6	cell line	sgMsh2	112071871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	251	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T711A:p.S237S	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.9249365	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	112091992	12A2p6	cell line	sgMsh2	112091992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	581	0	0	NA	exonic	Olfr1314	synonymous SNV	Olfr1314:NM_146450:exon1:c.T708C:p.A236A	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.9999989	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	112130499	12A2p6	cell line	sgMsh2	112130499	A	G	SNV	Mutect2;MuSe;Vardict	3	0.095	622	0	0	NA	exonic	Olfr1316	nonsynonymous SNV	Olfr1316:NM_146742:exon1:c.T317C:p.I106T	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.9262713	GAT	nonsynonymous	ATGG	9	ATGGATGGA	NA
M6_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	121	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	3	1	1	0.9999526	AAC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr2	112875135	12A2p6	cell line	sgMsh2	112875135	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	103	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon20:c.G2373T:p.M791I	2qE3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.9963756	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	114105839	12A2p6	cell line	sgMsh2	114105839	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	172	0	0	NA	exonic	Aqr	synonymous SNV	"Aqr:NM_001290788:exon33:c.G4002A:p.L1334L,Aqr:NM_009702:exon33:c.G4002A:p.L1334L"	2qE4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.960665	GCA	synonymous	NA	NA	NA	NA
M6_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	197	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.305259214	3	0.9999795	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	117153037	12A2p6	cell line	sgMsh2	117153037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	208	0	0	NA	exonic	Spred1	synonymous SNV	"Spred1:NM_001277256:exon2:c.C78T:p.D26D,Spred1:NM_033524:exon2:c.C78T:p.D26D"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9801348	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	242	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	3.64E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	85	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	0.6972638	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	118790755	12A2p6	cell line	sgMsh2	118790755	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	135	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.A1967C:p.K656T	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9975064	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	118823465	12A2p6	cell line	sgMsh2	118823465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	85	0	0	NA	exonic	Knstrn	synonymous SNV	Knstrn:NM_026412:exon5:c.T522C:p.D174D	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.816707	ATA	synonymous	A	5	AAAAA	NA
M6_p20	chr2	118927583	12A2p6	cell line	sgMsh2	118927583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	125	0	0	NA	exonic	Chst14	nonsynonymous SNV	Chst14:NM_028117:exon1:c.A932G:p.E311G	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.9965701	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	119022129	12A2p6	cell line	sgMsh2	119022129	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	193	0	0	NA	exonic	Ccdc32	nonsynonymous SNV	Ccdc32:NM_199310:exon3:c.G341A:p.R114Q	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.6627961	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	119069078	12A2p6	cell line	sgMsh2	119069078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	138	0	0	NA	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1259T:p.K420M,Knl1:NM_029617:exon8:c.A1259T:p.K420M"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999855	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	119069506	12A2p6	cell line	sgMsh2	119069506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	217	0	0	NA	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1687G:p.S563G,Knl1:NM_029617:exon8:c.A1687G:p.S563G"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9979649	AAG	nonsynonymous	TAAGT	17	TAAGTTAAGTCAAGTTA	NA
M6_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Strelka2;Vardict	2	0.2192	146	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M6_p20	chr2	119210530	12A2p6	cell line	sgMsh2	119210530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	86	0	0	NA	exonic	Zfyve19	nonsynonymous SNV	"Zfyve19:NM_001164827:exon2:c.T103C:p.F35L,Zfyve19:NM_028054:exon2:c.T103C:p.F35L"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9991957	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	76	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9981949	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	119270688	12A2p6	cell line	sgMsh2	119270688	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	123	0	0	NA	exonic	Rhov	synonymous SNV	Rhov:NM_145530:exon2:c.A261T:p.A87A	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.603315	CTG	synonymous	CCTGC	10	CCTGCCCTGC	NA
M6_p20	chr2	119293418	12A2p6	cell line	sgMsh2	119293418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	51	0	0	NA	exonic	Vps18	synonymous SNV	Vps18:NM_172269:exon4:c.T825C:p.P275P	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9865062	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	119751679	12A2p6	cell line	sgMsh2	119751679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	33	0	0	NA	exonic	Ltk	nonsynonymous SNV	"Ltk:NM_008523:exon14:c.A1654G:p.R552G,Ltk:NM_206941:exon15:c.A1837G:p.R613G,Ltk:NM_206942:exon19:c.A2407G:p.R803G,Ltk:NM_203345:exon20:c.A2590G:p.R864G"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.8472858	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	60	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9934412	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120171767	12A2p6	cell line	sgMsh2	120171767	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	255	0	0	NA	exonic	Pla2g4e	synonymous SNV	"Pla2g4e:NM_001363091:exon16:c.C687A:p.T229T,Pla2g4e:NM_177845:exon16:c.C1806A:p.T602T,Pla2g4e:NM_001363090:exon17:c.C1539A:p.T513T"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.9999988	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	120191246	12A2p6	cell line	sgMsh2	120191246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	141	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.T380C:p.L127P,Pla2g4e:NM_001363090:exon4:c.T113C:p.L38P"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999906	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Vardict	2	0.085	143	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.399185125	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr2	120533940	12A2p6	cell line	sgMsh2	120533941	TT	CC	DBS	Mutect2;Vardict	2	0.097	154	0	0	NA	exonic	Zfp106	nonframeshift substitution	Zfp106:NM_011743:exon5:c.2053_2054GG:p.N685G	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.455540673	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120607915	12A2p6	cell line	sgMsh2	120607915	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	82	0	0	NA	exonic	Lrrc57	frameshift deletion	"Lrrc57:NM_001159609:exon4:c.451delC:p.Q151Sfs*3,Lrrc57:NM_001159610:exon4:c.502delC:p.Q168Sfs*3,Lrrc57:NM_001159612:exon4:c.376delC:p.Q126Sfs*3,Lrrc57:NM_025657:exon4:c.376delC:p.Q126Sfs*3"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.90638505	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr2	120677961	12A2p6	cell line	sgMsh2	120677961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	378	0	0	NA	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon10:c.A749G:p.N250S	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.944968	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120719193	12A2p6	cell line	sgMsh2	120719193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	162	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon27:c.A3542G:p.H1181R	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999983	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	158	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.8603086	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120882258	12A2p6	cell line	sgMsh2	120882258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	161	0	0	NA	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon38:c.C4193T:p.T1398I	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9847976	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120947880	12A2p6	cell line	sgMsh2	120947880	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	68	0	0	NA	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon6:c.T676C:p.Y226H	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.09479537	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	120955715	12A2p6	cell line	sgMsh2	120955715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	38	0	0	NA	exonic	Ubr1	synonymous SNV	Ubr1:NM_009461:exon4:c.T423C:p.H141H	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9622963	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	121021461	12A2p6	cell line	sgMsh2	121021461	G	-	Deletion	Mutect2;Vardict	2	0.143	54	0	0	NA	exonic	Epb42	frameshift deletion	Epb42:NM_013513:exon12:c.1851delC:p.M618Cfs*50	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.67157027	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	133	0	0	NA	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999821	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	158	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.8599192	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	121343482	12A2p6	cell line	sgMsh2	121343482	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	332	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon10:c.G1157T:p.G386V	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999919	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	121348482	12A2p6	cell line	sgMsh2	121348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	369	0	0	NA	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon7:c.T762C:p.D254D	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9999993	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	121348531	12A2p6	cell line	sgMsh2	121348531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	325	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon7:c.G713A:p.S238N	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.9218395	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	121548711	12A2p6	cell line	sgMsh2	121548711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	69	0	0	NA	exonic	Frmd5	nonsynonymous SNV	Frmd5:NM_001360084:exon14:c.A1657G:p.R553G	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.8551664	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	122059523	12A2p6	cell line	sgMsh2	122059523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	102	0	0	NA	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon34:c.T6337C:p.F2113L	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9887476	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	122123858	12A2p6	cell line	sgMsh2	122123858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	337	0	0	NA	exonic	Patl2	nonsynonymous SNV	Patl2:NM_026251:exon15:c.G1231A:p.G411S	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.999965	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	122349395	12A2p6	cell line	sgMsh2	122349395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	108	0	0	NA	exonic	Shf	nonsynonymous SNV	"Shf:NM_001013829:exon6:c.A675T:p.E225D,Shf:NM_001374011:exon7:c.A1410T:p.E470D"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9913262	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	122799964	12A2p6	cell line	sgMsh2	122799964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	181	0	0	NA	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon6:c.T857C:p.V286A,Sqor:NM_021507:exon6:c.T857C:p.V286A"	2qE5	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.5396878	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	125190262	12A2p6	cell line	sgMsh2	125190262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	196	0	0	NA	exonic	Slc12a1	nonsynonymous SNV	"Slc12a1:NM_001079690:exon15:c.T1832C:p.M611T,Slc12a1:NM_183354:exon15:c.T1832C:p.M611T"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9858537	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	125329052	12A2p6	cell line	sgMsh2	125329052	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	98	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon48:c.C5862T:p.G1954G	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.8894746	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr2	125377880	12A2p6	cell line	sgMsh2	125377880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	254	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon17:c.T2026C:p.L676L	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.962740597	1	2.07E-08	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	81	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.8739363	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	126459694	12A2p6	cell line	sgMsh2	126459694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	323	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon5:c.T245C:p.I82T,Atp8b4:NM_001359975:exon5:c.T245C:p.I82T"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.9857168	AAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M6_p20	chr2	126462655	12A2p6	cell line	sgMsh2	126462655	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	485	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon4:c.T157G:p.L53V,Atp8b4:NM_001359975:exon4:c.T157G:p.L53V"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	1.45E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	126653571	12A2p6	cell line	sgMsh2	126653571	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	157	0	0	NA	exonic	Gabpb1	nonsynonymous SNV	"Gabpb1:NM_001271468:exon3:c.T260C:p.V87A,Gabpb1:NM_001271469:exon3:c.T260C:p.V87A,Gabpb1:NM_001271492:exon3:c.T260C:p.V87A,Gabpb1:NM_001355108:exon3:c.T260C:p.V87A,Gabpb1:NM_010249:exon3:c.T260C:p.V87A,Gabpb1:NM_207669:exon3:c.T260C:p.V87A,Gabpb1:NM_001271467:exon4:c.T260C:p.V87A,Gabpb1:NM_001271470:exon4:c.T260C:p.V87A,Gabpb1:NM_001355109:exon4:c.T260C:p.V87A"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999974	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	157	0	0	NA	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999974	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr2	127086860	12A2p6	cell line	sgMsh2	127086860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	208	0	0	NA	exonic	Blvra	synonymous SNV	Blvra:NM_026678:exon5:c.T267C:p.A89A	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9993121	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	127226396	12A2p6	cell line	sgMsh2	127226396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	133	0	0	NA	exonic	Snrnp200	synonymous SNV	Snrnp200:NM_177214:exon20:c.G2655A:p.Q885Q	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9682139	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	330	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	146	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999937	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	127804943	12A2p6	cell line	sgMsh2	127804943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	196	0	0	NA	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon21:c.T2416C:p.F806L,Bub1:NM_009772:exon21:c.T2413C:p.F805L"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.99091837	1	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	128729258	12A2p6	cell line	sgMsh2	128729258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	101	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon2:c.T131C:p.V44A	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.000971787	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	248	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999454	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	187	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.9773586	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.379	361	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130137453	12A2p6	cell line	sgMsh2	130137453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	163	0	0	NA	exonic	Tgm6	nonsynonymous SNV	Tgm6:NM_177726:exon4:c.G502A:p.V168M	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9929477	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130141280	12A2p6	cell line	sgMsh2	130141280	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	183	0	0	NA	exonic	Tgm6	nonsynonymous SNV	"Tgm6:NM_001289749:exon4:c.A119G:p.K40R,Tgm6:NM_001289748:exon6:c.A119G:p.K40R,Tgm6:NM_177726:exon6:c.A788G:p.K263R,Tgm6:NM_001289747:exon7:c.A119G:p.K40R"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999757	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	188	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.488414742	2	0.9368184	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130615776	12A2p6	cell line	sgMsh2	130615776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	60	0	0	NA	exonic	Fastkd5	stopgain	"Fastkd5:NM_001377124:exon2:c.T758A:p.L253X,Fastkd5:NM_001377125:exon2:c.T758A:p.L253X,Fastkd5:NM_001146084:exon3:c.T758A:p.L253X,Fastkd5:NM_198176:exon3:c.T758A:p.L253X"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.981525779	1	0.9907268	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	91	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.413274012	3	0.7155985	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130973419	12A2p6	cell line	sgMsh2	130973419	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	152	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon14:c.A2254G:p.M752V	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.389792534	3	0.9656487	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	130994169	12A2p6	cell line	sgMsh2	130994169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	339	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon20:c.A3368T:p.K1123M	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.958044301	1	1.09E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	149	0	0	NA	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.8403665	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	47	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.967436892	1	0.970292	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	132058256	12A2p6	cell line	sgMsh2	132058256	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	337	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	"Slc23a2:NM_001355430:exon15:c.C1658T:p.T553I,Slc23a2:NM_018824:exon15:c.C1658T:p.T553I"	2qF2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.886377	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	233	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.9999987	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	138284030	12A2p6	cell line	sgMsh2	138284030	T	C	SNV	Mutect2;Vardict	2	0.109	83	0	0	NA	exonic	Btbd3	nonsynonymous SNV	"Btbd3:NM_145534:exon4:c.T1133C:p.L378P,Btbd3:NM_001025431:exon5:c.T926C:p.L309P"	2qF3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.09089987	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	139546415	12A2p6	cell line	sgMsh2	139546415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	91	0	0	NA	exonic	Sptlc3	nonsynonymous SNV	"Sptlc3:NM_001356507:exon3:c.A326G:p.D109G,Sptlc3:NM_175467:exon4:c.A326G:p.D109G"	2qF3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.850029502	1	0.9620084	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	140129235	12A2p6	cell line	sgMsh2	140129235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	326	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon11:c.A1985G:p.N662S	2qF3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9999014	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	140167949	12A2p6	cell line	sgMsh2	140167949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	53	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon2:c.A466G:p.S156G	2qF3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9884997	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	140240982	12A2p6	cell line	sgMsh2	140240982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	345	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon18:c.A1735G:p.S579G	2qF3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9999608	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	143858116	12A2p6	cell line	sgMsh2	143858116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	505	0	0	NA	exonic	Bfsp1	nonsynonymous SNV	"Bfsp1:NM_001291061:exon2:c.T358C:p.Y120H,Bfsp1:NM_009751:exon2:c.T358C:p.Y120H"	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	1.73E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	143989053	12A2p6	cell line	sgMsh2	143989053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	77	0	0	NA	exonic	Rrbp1	nonsynonymous SNV	"Rrbp1:NM_024281:exon2:c.A1193G:p.Q398R,Rrbp1:NM_133626:exon2:c.A1193G:p.Q398R"	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.8422051	CTG	nonsynonymous	TGGTTT	12	TGGTTTTGGTTT	NA
M6_p20	chr2	144594154	12A2p6	cell line	sgMsh2	144594154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	123	0	0	NA	exonic	Smim26	nonsynonymous SNV	Smim26:NM_001033297:exon1:c.T64C:p.W22R	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	0.8445667	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	145860441	12A2p6	cell line	sgMsh2	145860441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	42	0	0	NA	exonic	Rin2	synonymous SNV	Rin2:NM_028724:exon9:c.A921G:p.K307K	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9724397	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	146412145	12A2p6	cell line	sgMsh2	146412145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	59	0	0	NA	exonic	Ralgapa2	synonymous SNV	Ralgapa2:NM_001033348:exon18:c.T2353C:p.L785L	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	0.9764227	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr2	146460717	12A2p6	cell line	sgMsh2	146460717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	231	0	0	NA	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon4:c.A325G:p.I109V	2qG1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.858319	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	147029768	12A2p6	cell line	sgMsh2	147029768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	exonic	Xrn2	nonsynonymous SNV	"Xrn2:NM_001356402:exon11:c.T611C:p.V204A,Xrn2:NM_001356403:exon12:c.T416C:p.V139A,Xrn2:NM_011917:exon12:c.T1109C:p.V370A"	2qG2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.915777641	1	0.9990047	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	148688061	12A2p6	cell line	sgMsh2	148688061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	228	0	0	NA	exonic	Gzf1	nonsynonymous SNV	"Gzf1:NM_001355689:exon4:c.T1511C:p.L504S,Gzf1:NM_028986:exon4:c.T1511C:p.L504S"	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.6061966	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	150324034	12A2p6	cell line	sgMsh2	150324034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	198	0	0	NA	exonic	Gm10130	nonsynonymous SNV	Gm10130:NM_001374676:exon3:c.T137C:p.V46A	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.5977753	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	150587016	12A2p6	cell line	sgMsh2	150587016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	122	0	0	NA	exonic	Apmap	nonsynonymous SNV	"Apmap:NM_027977:exon6:c.T686C:p.V229A,Apmap:NM_001356491:exon7:c.T458C:p.V153A,Apmap:NM_001356492:exon7:c.T101C:p.V34A"	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.864118389	1	0.991981	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	150590098	12A2p6	cell line	sgMsh2	150590098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	167	0	0	NA	exonic	Apmap	nonsynonymous SNV	"Apmap:NM_027977:exon4:c.G353A:p.G118D,Apmap:NM_001356491:exon5:c.G125A:p.G42D"	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.911081345	1	0.9998771	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	150637979	12A2p6	cell line	sgMsh2	150637979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	119	0	0	NA	exonic	Acss1	synonymous SNV	Acss1:NM_080575:exon5:c.T807C:p.P269P	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.718533226	2	0.6796794	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr2	150963359	12A2p6	cell line	sgMsh2	150963359	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	66	0	0	NA	exonic	Ninl	nonsynonymous SNV	Ninl:NM_207204:exon10:c.A1303G:p.I435V	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.572948062	2	0.9388991	ATT	nonsynonymous	TTTTC	10	TTTTCTTTTC	NA
M6_p20	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	56	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.6918907	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	50	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.5895334	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	153000138	12A2p6	cell line	sgMsh2	153000138	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	158	0	0	NA	exonic	Ttll9	nonsynonymous SNV	"Ttll9:NM_001355717:exon10:c.T725A:p.L242Q,Ttll9:NM_001355719:exon11:c.T725A:p.L242Q,Ttll9:NM_001083618:exon12:c.T911A:p.L304Q,Ttll9:NM_001355720:exon12:c.T629A:p.L210Q,Ttll9:NM_029064:exon12:c.T911A:p.L304Q"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.9488126	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	153194353	12A2p6	cell line	sgMsh2	153194353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	168	0	0	NA	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon10:c.T1034C:p.L345P	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.8357068	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	153261424	12A2p6	cell line	sgMsh2	153261424	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	120	0	0	NA	exonic	Pofut1	nonsynonymous SNV	Pofut1:NM_080463:exon6:c.A977T:p.Q326L	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.94865171	1	0.9996425	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	153470739	12A2p6	cell line	sgMsh2	153470739	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	100	0	0	NA	exonic	Nol4l	synonymous SNV	Nol4l:NM_001134300:exon4:c.C648T:p.T216T	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.8012522	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	153856217	12A2p6	cell line	sgMsh2	153856217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	177	0	0	NA	exonic	Sun5	nonsynonymous SNV	"Sun5:NM_029599:exon12:c.T1042C:p.S348P,Sun5:NM_001305048:exon13:c.T1117C:p.S373P"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9998413	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	153932715	12A2p6	cell line	sgMsh2	153932715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	367	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon16:c.T1400C:p.V467A,Bpifb3:NM_194357:exon16:c.T1400C:p.V467A"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.9791802	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	154009883	12A2p6	cell line	sgMsh2	154009883	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	240	0	0	NA	exonic	Bpifa2	nonsynonymous SNV	Bpifa2:NM_008953:exon3:c.A238C:p.S80R	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.380399943	3	0.9985074	AAG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;MuSe;Vardict	3	0.103	172	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.09796598	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr2	154521212	12A2p6	cell line	sgMsh2	154521212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	231	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_001285446:exon7:c.T357C:p.A119A,Cbfa2t2:NM_009823:exon7:c.T1008C:p.A336A,Cbfa2t2:NM_172860:exon7:c.T1008C:p.A336A"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9750283	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	185	0	0	NA	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.399185125	3	0.9721338	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr2	155632414	12A2p6	cell line	sgMsh2	155632414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	37	0	0	NA	exonic	Myh7b	nonsynonymous SNV	Myh7b:NM_001085378:exon36:c.G5048A:p.R1683H	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9592453	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	155979285	12A2p6	cell line	sgMsh2	155979285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	104	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon19:c.A2791G:p.S931G,Cep250:NM_001130000:exon19:c.A2794G:p.S932G,Cep250:NM_008383:exon20:c.A2731G:p.S911G,Cep250:NM_177217:exon20:c.A2731G:p.S911G"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.845333207	1	0.9711411	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	155986018	12A2p6	cell line	sgMsh2	155986018	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	32	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon24:c.A3548T:p.E1183V,Cep250:NM_001130000:exon24:c.A3551T:p.E1184V,Cep250:NM_008383:exon25:c.A3488T:p.E1163V,Cep250:NM_177217:exon25:c.A3488T:p.E1163V"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.943955414	1	0.899158	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	156096428	12A2p6	cell line	sgMsh2	156096428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	72	0	0	NA	exonic	Rbm12	nonsynonymous SNV	"Rbm12:NM_029397:exon3:c.A1923G:p.I641M,Rbm12:NM_170598:exon3:c.A1923G:p.I641M"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9448972	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	225	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	0.999785	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	156144569	12A2p6	cell line	sgMsh2	156144569	C	T	SNV	Mutect2;Vardict	2	0.105	60	0	0	NA	exonic	Romo1	synonymous SNV	"Romo1:NM_025946:exon1:c.C111T:p.F37F,Romo1:NM_001164216:exon2:c.C111T:p.F37F,Romo1:NM_001164217:exon2:c.C111T:p.F37F"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.00838543	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.5	6	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	3	1	1	0.624693	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	661	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.389792534	3	0.9999999	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr2	157169951	12A2p6	cell line	sgMsh2	157169951	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	174	0	0	NA	exonic	Rbl1	nonsynonymous SNV	Rbl1:NM_011249:exon15:c.A2083T:p.I695F	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.8443009	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	157295373	12A2p6	cell line	sgMsh2	157295373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	243	0	0	NA	exonic	Rpn2	nonsynonymous SNV	"Rpn2:NM_001355163:exon6:c.A675C:p.E225D,Rpn2:NM_001355164:exon6:c.A666C:p.E222D,Rpn2:NM_001355165:exon6:c.A21C:p.E7D,Rpn2:NM_019642:exon6:c.A675C:p.E225D"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.7937979	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	150	0	0	NA	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999955	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M6_p20	chr2	158058754	12A2p6	cell line	sgMsh2	158058754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	71	0	0	NA	exonic	Rprd1b	nonsynonymous SNV	"Rprd1b:NM_001291136:exon5:c.A371G:p.Q124R,Rprd1b:NM_001291134:exon6:c.A758G:p.Q253R,Rprd1b:NM_001291135:exon6:c.A758G:p.Q253R,Rprd1b:NM_027434:exon6:c.A755G:p.Q252R"	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.887599867	1	0.967627	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	158120220	12A2p6	cell line	sgMsh2	158120220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	97	0	0	NA	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon11:c.A1678G:p.I560V	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.8667757	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	85	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	9.12E-06	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	32	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	0.9401058	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	160715046	12A2p6	cell line	sgMsh2	160715046	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.228	74	0	0	NA	exonic	Top1	frameshift insertion	Top1:NM_009408:exon16:c.1646dupT:p.K551fs*0	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6_p20	chr2	160753658	12A2p6	cell line	sgMsh2	160753658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	97	0	0	NA	exonic	Plcg1	nonsynonymous SNV	Plcg1:NM_021280:exon16:c.T1525C:p.Y509H	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9912074	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	296	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.225422188	3	1.01E-09	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr2	160895539	12A2p6	cell line	sgMsh2	160895539	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.141	68	0	0	NA	exonic	Lpin3	nonsynonymous SNV	"Lpin3:NM_001199118:exon4:c.A505G:p.T169A,Lpin3:NM_022883:exon4:c.A505G:p.T169A"	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.8252993	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	333	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999985	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M6_p20	chr2	162253765	12A2p6	cell line	sgMsh2	162253765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	109	0	0	NA	exonic	Ptprt	synonymous SNV	"Ptprt:NM_001291149:exon5:c.A684G:p.K228K,Ptprt:NM_001291150:exon5:c.A684G:p.K228K,Ptprt:NM_001291151:exon5:c.A684G:p.K228K,Ptprt:NM_021464:exon5:c.A684G:p.K228K"	2qH2	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9662614	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	163376333	12A2p6	cell line	sgMsh2	163376333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	63	0	0	NA	exonic	Jph2	nonsynonymous SNV	"Jph2:NM_021566:exon2:c.A422G:p.Y141C,Jph2:NM_001205076:exon3:c.A422G:p.Y141C"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9948479	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	164025647	12A2p6	cell line	sgMsh2	164025647	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.131	60	0	0	NA	exonic	Pabpc1l	nonsynonymous SNV	Pabpc1l:NM_001114079:exon1:c.A167G:p.Y56C	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.615214723	2	0.09404528	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	164820502	12A2p6	cell line	sgMsh2	164820502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	147	0	0	NA	exonic	Zswim3	nonsynonymous SNV	Zswim3:NM_178375:exon2:c.C901T:p.L301F	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.850029502	1	0.9940554	TCT	nonsynonymous	CTCTC	10	CTCTCCTCTC	NA
M6_p20	chr2	164827437	12A2p6	cell line	sgMsh2	164827437	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	38	0	0	NA	exonic	Spata25	nonsynonymous SNV	Spata25:NM_029370:exon2:c.T653C:p.V218A	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.7495653	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	164889684	12A2p6	cell line	sgMsh2	164889684	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	133	0	0	NA	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon13:c.T1607A:p.F536Y,Pcif1:NM_001374127:exon14:c.T1556A:p.F519Y,Pcif1:NM_001374128:exon14:c.T1556A:p.F519Y,Pcif1:NM_146129:exon14:c.T1556A:p.F519Y"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.9229928	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	164973752	12A2p6	cell line	sgMsh2	164973752	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	319	0	0	NA	exonic	Slc12a5	nonsynonymous SNV	"Slc12a5:NM_001355480:exon2:c.T187C:p.Y63H,Slc12a5:NM_001355481:exon2:c.T187C:p.Y63H,Slc12a5:NM_020333:exon2:c.T118C:p.Y40H"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	165314768	12A2p6	cell line	sgMsh2	165314768	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	99	0	0	NA	exonic	Elmo2	nonsynonymous SNV	"Elmo2:NM_001302754:exon4:c.T206G:p.I69S,Elmo2:NM_001302752:exon5:c.T206G:p.I69S,Elmo2:NM_080287:exon5:c.T206G:p.I69S,Elmo2:NM_207706:exon5:c.T206G:p.I69S"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.798370251	1	0.8688429	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	165353130	12A2p6	cell line	sgMsh2	165353130	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.118	54	0	0	NA	exonic	Zfp663	nonsynonymous SNV	"Zfp663:NM_001379475:exon5:c.A1168T:p.T390S,Zfp663:NM_001379476:exon5:c.A1060T:p.T354S,Zfp663:NM_001005425:exon6:c.A1168T:p.T390S,Zfp663:NM_001379474:exon6:c.A1168T:p.T390S"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.8908889	GTT	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr2	165380247	12A2p6	cell line	sgMsh2	165380247	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	75	0	0	NA	exonic	Zfp334	synonymous SNV	Zfp334:NM_178411:exon5:c.A1875G:p.K625K	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.720011	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	165685599	12A2p6	cell line	sgMsh2	165685599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	133	0	0	NA	exonic	Eya2	nonsynonymous SNV	"Eya2:NM_001271962:exon4:c.A188G:p.Y63C,Eya2:NM_001271963:exon4:c.A188G:p.Y63C,Eya2:NM_010165:exon4:c.A188G:p.Y63C"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9852203	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	166077539	12A2p6	cell line	sgMsh2	166077539	G	-	Deletion	Mutect2;Vardict	2	0.151	107	0	0	NA	exonic	Sulf2	frameshift deletion	"Sulf2:NM_001252578:exon18:c.2488delC:p.R830Gfs*28,Sulf2:NM_001252579:exon18:c.2587delC:p.R863Gfs*28,Sulf2:NM_028072:exon18:c.2488delC:p.R830Gfs*28,Sulf2:NM_001355619:exon19:c.2488delC:p.R830Gfs*28"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.709140635	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M6_p20	chr2	166854918	12A2p6	cell line	sgMsh2	166854918	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	153	0	0	NA	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon13:c.G1700A:p.R567K	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.5288612	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	166863660	12A2p6	cell line	sgMsh2	166863660	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	140	0	0	NA	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon20:c.G2810A:p.R937H	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.6697377	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	167019920	12A2p6	cell line	sgMsh2	167019920	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	79	0	0	NA	exonic	Ddx27	nonsynonymous SNV	Ddx27:NM_153065:exon4:c.G341C:p.G114A	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9985835	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	387	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	168536341	12A2p6	cell line	sgMsh2	168536341	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	113	0	0	NA	exonic	Nfatc2	nonsynonymous SNV	"Nfatc2:NM_001291171:exon3:c.G53T:p.R18M,Nfatc2:NM_001291173:exon3:c.G53T:p.R18M,Nfatc2:NM_001291176:exon3:c.G53T:p.R18M,Nfatc2:NM_001291178:exon3:c.G53T:p.R18M,Nfatc2:NM_001037177:exon4:c.G1403T:p.R468M,Nfatc2:NM_001037178:exon4:c.G740T:p.R247M,Nfatc2:NM_001136073:exon4:c.G1403T:p.R468M,Nfatc2:NM_001291168:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291169:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291170:exon4:c.G740T:p.R247M,Nfatc2:NM_001291172:exon4:c.G1343T:p.R448M,Nfatc2:NM_001291174:exon4:c.G740T:p.R247M,Nfatc2:NM_001291175:exon4:c.G740T:p.R247M,Nfatc2:NM_001291177:exon4:c.G740T:p.R247M,Nfatc2:NM_001291179:exon4:c.G740T:p.R247M,Nfatc2:NM_010899:exon4:c.G1403T:p.R468M"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.920473936	1	0.9984686	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	168754816	12A2p6	cell line	sgMsh2	168754816	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	71	0	0	NA	exonic	Sall4	nonsynonymous SNV	Sall4:NM_175303:exon2:c.G2103T:p.E701D	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.997297	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	168756149	12A2p6	cell line	sgMsh2	168756149	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	124	0	0	NA	exonic	Sall4	nonsynonymous SNV	"Sall4:NM_175303:exon2:c.G770T:p.S257I,Sall4:NM_201395:exon2:c.G770T:p.S257I"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9736729	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	168925849	12A2p6	cell line	sgMsh2	168925849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	83	0	0	NA	exonic	Zfp64	synonymous SNV	Zfp64:NM_009564:exon6:c.T1842C:p.L614L	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9273453	TAA	synonymous	NA	NA	NA	NA
M6_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	79	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.8876424	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	169884258	12A2p6	cell line	sgMsh2	169884258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	90	0	0	NA	exonic	Tshz2	nonsynonymous SNV	"Tshz2:NM_001363022:exon2:c.A773G:p.K258R,Tshz2:NM_001363023:exon2:c.A773G:p.K258R,Tshz2:NM_080455:exon2:c.A773G:p.K258R,Tshz2:NM_177659:exon2:c.A773G:p.K258R"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.8797156	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	147	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999942	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	172445350	12A2p6	cell line	sgMsh2	172445350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	251	0	0	NA	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon3:c.T188C:p.I63T	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.450844377	3	0.5439738	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	172468763	12A2p6	cell line	sgMsh2	172468763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	77	0	0	NA	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon9:c.T913C:p.Y305H	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9801309	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	154	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9465948	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	172982025	12A2p6	cell line	sgMsh2	172982025	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	181	0	0	NA	exonic	Spo11	frameshift deletion	Spo11:NM_012046:exon2:c.178delA:p.S61Afs*11	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.798370251	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr2	173578048	12A2p6	cell line	sgMsh2	173578048	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	43	0	0	NA	exonic	Ankrd60	synonymous SNV	"Ankrd60:NM_001199955:exon1:c.G27A:p.E9E,Ankrd60:NM_027303:exon1:c.G27A:p.E9E"	2qH3	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9745283	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr2	174345240	12A2p6	cell line	sgMsh2	174345240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	221	0	0	NA	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon7:c.T2773C:p.C925R,Gnas:NM_001077510:exon7:c.T556C:p.C186R,Gnas:NM_001364030:exon7:c.T553C:p.C185R,Gnas:NM_010309:exon8:c.T2815C:p.C939R,Gnas:NM_201616:exon8:c.T598C:p.C200R,Gnas:NM_001310083:exon9:c.T598C:p.C200R"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.8658499	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	174648180	12A2p6	cell line	sgMsh2	174648180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	232	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon2:c.C3739T:p.R1247C	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.995614666	1	9.19E-09	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	350	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr2	178374934	12A2p6	cell line	sgMsh2	178374934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	269	0	0	NA	exonic	Sycp2	nonsynonymous SNV	Sycp2:NM_177191:exon22:c.C1874A:p.P625H	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999558	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	178420663	12A2p6	cell line	sgMsh2	178420663	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	85	0	0	NA	exonic	Fam217b	nonsynonymous SNV	Fam217b:NM_001081289:exon4:c.A419G:p.E140G	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9738715	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	178460063	12A2p6	cell line	sgMsh2	178460063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	254	0	0	NA	exonic	Cdh26	synonymous SNV	"Cdh26:NM_001291189:exon5:c.T474C:p.P158P,Cdh26:NM_198656:exon5:c.T474C:p.P158P"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9790131	CTA	synonymous	T	5	TTTTT	NA
M6_p20	chr2	178460775	12A2p6	cell line	sgMsh2	178460775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	246	0	0	NA	exonic	Cdh26	nonsynonymous SNV	"Cdh26:NM_001291189:exon6:c.A734G:p.N245S,Cdh26:NM_198656:exon6:c.A734G:p.N245S"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9959144	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	178477681	12A2p6	cell line	sgMsh2	178477681	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	165	0	0	NA	exonic	Cdh26	synonymous SNV	Cdh26:NM_198656:exon13:c.T1992C:p.T664T	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999162	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr2	180052506	12A2p6	cell line	sgMsh2	180052506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	96	0	0	NA	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon2:c.T112C:p.Y38H	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.6719534	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180058120	12A2p6	cell line	sgMsh2	180058120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	212	0	0	NA	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon7:c.T772C:p.Y258H	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9759839	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180101087	12A2p6	cell line	sgMsh2	180101087	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.132	40	0	0	NA	exonic	Hrh3	synonymous SNV	Hrh3:NM_133849:exon3:c.C747A:p.P249P	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.7717098	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr2	180145179	12A2p6	cell line	sgMsh2	180145179	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	128	0	0	NA	exonic	Osbpl2	nonsynonymous SNV	Osbpl2:NM_144500:exon6:c.T484G:p.L162V	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9826143	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180202253	12A2p6	cell line	sgMsh2	180202253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	178	0	0	NA	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon8:c.G1114A:p.D372N	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9226399	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180258378	12A2p6	cell line	sgMsh2	180258378	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	283	0	0	NA	exonic	Rps21	synonymous SNV	"Rps21:NM_001355516:exon5:c.G243A:p.K81K,Rps21:NM_001355517:exon6:c.G243A:p.K81K,Rps21:NM_001355518:exon6:c.G243A:p.K81K,Rps21:NM_001355520:exon6:c.G243A:p.K81K,Rps21:NM_001355521:exon6:c.G243A:p.K81K,Rps21:NM_025587:exon6:c.G243A:p.K81K"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999736	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	164	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	0.9999561	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	181	0	0	NA	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	94	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9995789	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr2	180911048	12A2p6	cell line	sgMsh2	180911048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	107	0	0	NA	exonic	Ythdf1	nonsynonymous SNV	Ythdf1:NM_173761:exon4:c.A1292G:p.K431R	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9895879	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	181000460	12A2p6	cell line	sgMsh2	181000460	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	130	0	0	NA	exonic	Col20a1	synonymous SNV	Col20a1:NM_028518:exon16:c.C2163A:p.G721G	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999771	GCA	synonymous	NA	NA	NA	NA
M6_p20	chr2	181013423	12A2p6	cell line	sgMsh2	181013423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	58	0	0	NA	exonic	Col20a1	nonsynonymous SNV	Col20a1:NM_028518:exon29:c.A3472T:p.T1158S	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5362677	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	181081450	12A2p6	cell line	sgMsh2	181081450	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	62	0	0	NA	exonic	Kcnq2	nonsynonymous SNV	"Kcnq2:NM_001302888:exon16:c.G2159T:p.R720L,Kcnq2:NM_010611:exon17:c.G2216T:p.R739L"	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.7385713	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr2	181670370	12A2p6	cell line	sgMsh2	181670370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	112	0	0	NA	exonic	Sox18	nonsynonymous SNV	Sox18:NM_009236:exon2:c.T967C:p.Y323H	2qH4	chr2-97631202-181807525	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9917581	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	5242704	12A2p6	cell line	sgMsh2	5242704	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	172	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.C989A:p.P330H,Zfhx4:NM_030708:exon2:c.C989A:p.P330H"	3qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	93	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M6_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	274	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	5560883	12A2p6	cell line	sgMsh2	5560883	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	241	0	0	NA	exonic	Pex2	nonsynonymous SNV	"Pex2:NM_001267714:exon4:c.A865G:p.S289G,Pex2:NM_001267715:exon4:c.A865G:p.S289G,Pex2:NM_001163301:exon5:c.A865G:p.S289G,Pex2:NM_001163302:exon5:c.A865G:p.S289G,Pex2:NM_001163305:exon5:c.A865G:p.S289G,Pex2:NM_001163306:exon5:c.A865G:p.S289G,Pex2:NM_008994:exon6:c.A865G:p.S289G"	3qA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	285	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.43675549	3	0.8585592	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	15543244	12A2p6	cell line	sgMsh2	15543244	G	A	SNV	Mutect2;MuSe;Vardict	3	0.059	398	0	0	NA	exonic	Sirpb1b	nonsynonymous SNV	Sirpb1b:NM_001173460:exon3:c.C440T:p.S147F	3qA1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	168	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9896461	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr3	20266459	12A2p6	cell line	sgMsh2	20266459	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	331	0	0	NA	exonic	Cpb1	nonsynonymous SNV	Cpb1:NM_029706:exon4:c.G331A:p.G111R	3qA2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9930204	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	23846609	12A2p6	cell line	sgMsh2	23846609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	142	0	0	NA	exonic	Naaladl2	nonsynonymous SNV	Naaladl2:NM_001326288:exon13:c.T2056C:p.F686L	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9889736	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	27239540	12A2p6	cell line	sgMsh2	27239540	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	170	0	0	NA	exonic	Nceh1	nonsynonymous SNV	Nceh1:NM_178772:exon4:c.T446G:p.L149R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.6552671	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	27372502	12A2p6	cell line	sgMsh2	27372502	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	70	0	0	NA	exonic	Ghsr	synonymous SNV	Ghsr:NM_177330:exon2:c.A706C:p.R236R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.878207276	1	0.9587085	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	351	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	31118554	12A2p6	cell line	sgMsh2	31118554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	68	0	0	NA	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon7:c.A1831G:p.M611V,Skil:NM_011386:exon7:c.A1969G:p.M657V,Skil:NM_001271772:exon9:c.A1591G:p.M531V"	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9965567	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M6_p20	chr3	32854616	12A2p6	cell line	sgMsh2	32854616	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	419	0	0	NA	exonic	Usp13	nonsynonymous SNV	Usp13:NM_001013024:exon4:c.T410G:p.L137R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	76	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9171962	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	34058009	12A2p6	cell line	sgMsh2	34058009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	175	0	0	NA	exonic	Dnajc19	nonsynonymous SNV	Dnajc19:NM_001026211:exon6:c.A386G:p.K129R	3qA3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.39448883	3	0.9742497	TTT	nonsynonymous	TTTTG	10	TTTTGTTTTG	NA
M6_p20	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.079	192	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9968249	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	36973333	12A2p6	cell line	sgMsh2	36973333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	229	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon43:c.A6865G:p.R2289G	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999658	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M6_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	383	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.497807333	2	0.9978725	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	38454366	12A2p6	cell line	sgMsh2	38454366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	154	0	0	NA	exonic	Ankrd50	nonsynonymous SNV	Ankrd50:NM_001373894:exon4:c.C3962T:p.T1321M	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999967	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	38483027	12A2p6	cell line	sgMsh2	38483027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	80	0	0	NA	exonic	Ankrd50	nonsynonymous SNV	"Ankrd50:NM_001167883:exon2:c.A176G:p.N59S,Ankrd50:NM_001373894:exon2:c.A176G:p.N59S"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9986935	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	38887230	12A2p6	cell line	sgMsh2	38887230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	90	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon1:c.T271C:p.Y91H	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.976829483	1	0.9988783	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	38891294	12A2p6	cell line	sgMsh2	38891294	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	184	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon1:c.T4335C:p.H1445H	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.9972082	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr3	38979852	12A2p6	cell line	sgMsh2	38979852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	176	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon9:c.C7652T:p.T2551I	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9983273	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	45381496	12A2p6	cell line	sgMsh2	45381496	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	117	0	0	NA	exonic	Pcdh10	synonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2244T:p.I748I,Pcdh10:NM_001098171:exon1:c.C2244T:p.I748I,Pcdh10:NM_001098172:exon1:c.C2244T:p.I748I,Pcdh10:NM_011043:exon1:c.C2244T:p.I748I"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9667752	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr3	45381524	12A2p6	cell line	sgMsh2	45381524	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	114	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098171:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098172:exon1:c.C2272A:p.L758I,Pcdh10:NM_011043:exon1:c.C2272A:p.L758I"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.9105984	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	45381753	12A2p6	cell line	sgMsh2	45381753	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	120	0	0	NA	exonic	Pcdh10	frameshift deletion	"Pcdh10:NM_001098170:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098171:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098172:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_011043:exon1:c.2501delT:p.L834Rfs*3"	3qB	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.901688754	NA	NA	CTG	frameshift	GACC	8	GACCGACC	-1
M6_p20	chr3	49744983	12A2p6	cell line	sgMsh2	49744983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	126	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.T3029C:p.V1010A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9488593	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	49754760	12A2p6	cell line	sgMsh2	49754760	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	326	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon1:c.T2105A:p.I702K	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.267688849	3	1.11E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	50427776	12A2p6	cell line	sgMsh2	50427776	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	149	0	0	NA	exonic	Slc7a11	nonsynonymous SNV	Slc7a11:NM_011990:exon4:c.C521A:p.T174N	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9955667	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	51493550	12A2p6	cell line	sgMsh2	51493550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	284	0	0	NA	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.T444C:p.N148N	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.887599867	1	0.999998	ATA	synonymous	AAAT	8	AAATAAAT	NA
M6_p20	chr3	51521321	12A2p6	cell line	sgMsh2	51521321	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.222	27	0	0	NA	exonic	Setd7	nonsynonymous SNV	Setd7:NM_080793:exon8:c.A1087G:p.T363A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9127268	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	52346125	12A2p6	cell line	sgMsh2	52346125	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	156	0	0	NA	exonic	Foxo1	nonsynonymous SNV	Foxo1:NM_019739:exon2:c.A1708G:p.S570G	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.366311056	3	0.9920063	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	53043350	12A2p6	cell line	sgMsh2	53043350	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	166	0	0	NA	exonic	Lhfp	nonsynonymous SNV	Lhfp:NM_175386:exon2:c.T44G:p.L15R	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9992921	CTT	nonsynonymous	GCTTT	10	GCTTTGCTTT	NA
M6_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	125	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9933301	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	54794474	12A2p6	cell line	sgMsh2	54794474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	193	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.A1135G:p.M379V	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	8.24E-09	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	55048409	12A2p6	cell line	sgMsh2	55048409	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	161	0	0	NA	exonic	Ccna1	nonsynonymous SNV	"Ccna1:NM_001305221:exon6:c.A965G:p.K322R,Ccna1:NM_007628:exon6:c.A965G:p.K322R"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9978412	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	55121731	12A2p6	cell line	sgMsh2	55121731	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	125	0	0	NA	exonic	Spg20	synonymous SNV	"Spg20:NM_001144987:exon3:c.G942A:p.E314E,Spg20:NM_001144988:exon3:c.G942A:p.E314E,Spg20:NM_144895:exon3:c.G942A:p.E314E"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9933301	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	286	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	1.02E-08	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	55968022	12A2p6	cell line	sgMsh2	55968022	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	216	0	0	NA	exonic	Nbea	synonymous SNV	Nbea:NM_030595:exon31:c.T5226C:p.A1742A	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.272385144	3	0.9999995	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	331	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.220725893	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	376	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.252	80	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr3	59217615	12A2p6	cell line	sgMsh2	59217615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	0	0	NA	exonic	P2ry12	nonsynonymous SNV	"P2ry12:NM_001357007:exon3:c.T638C:p.V213A,P2ry12:NM_001357010:exon4:c.T638C:p.V213A,P2ry12:NM_027571:exon4:c.T638C:p.V213A,P2ry12:NM_001357008:exon5:c.T638C:p.V213A"	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.859422094	1	0.9987592	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	59319866	12A2p6	cell line	sgMsh2	59319866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	287	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon7:c.A6385G:p.T2129A	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.9698702	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	59319877	12A2p6	cell line	sgMsh2	59319877	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.167	265	0	0	NA	exonic	Igsf10	frameshift deletion	Igsf10:NM_001162884:exon7:c.6374delA:p.K2125Rfs*49	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	211	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.676266565	2	0.9862025	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	59331736	12A2p6	cell line	sgMsh2	59331736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	252	0	0	NA	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.A1023G:p.L341L	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9992297	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	60039863	12A2p6	cell line	sgMsh2	60039863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	362	0	0	NA	exonic	Aadac	nonsynonymous SNV	Aadac:NM_023383:exon5:c.A981G:p.I327M	3qD	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.9973803	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	62340037	12A2p6	cell line	sgMsh2	62340037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	38	0	0	NA	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.T541C:p.S181P	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.9622963	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	63697910	12A2p6	cell line	sgMsh2	63697910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	201	0	0	NA	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A4572G:p.S1524S,Plch1:NM_001370984:exon24:c.A4548G:p.S1516S"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9976424	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr3	63698648	12A2p6	cell line	sgMsh2	63698648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	185	0	0	NA	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A3834G:p.P1278P,Plch1:NM_001370984:exon24:c.A3810G:p.P1270P"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999997	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	64503772	12A2p6	cell line	sgMsh2	64503772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	1352	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon2:c.T1113C:p.H371H,Vmn2r5:NM_001385126:exon3:c.T1374C:p.H458H"	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr3	66157922	12A2p6	cell line	sgMsh2	66157922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	171	0	0	NA	exonic	Veph1	nonsynonymous SNV	Veph1:NM_145820:exon9:c.T1723C:p.C575R	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9909253	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	67461382	12A2p6	cell line	sgMsh2	67461382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	214	0	0	NA	exonic	Lxn	synonymous SNV	Lxn:NM_016753:exon3:c.T300C:p.D100D	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999975	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr3	67467816	12A2p6	cell line	sgMsh2	67467816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	99	0	0	NA	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon14:c.T1611C:p.F537F	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9704001	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	404	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.9999997	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	68916152	12A2p6	cell line	sgMsh2	68916152	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.189	185	0	0	NA	exonic	Ift80	frameshift insertion	Ift80:NM_026641:exon16:c.1775dupT:p.H593Pfs*1	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.887599867	NA	NA	GGA	frameshift	NA	NA	NA	1
M6_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	133	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999821	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	68950427	12A2p6	cell line	sgMsh2	68950427	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	219	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon9:c.T884A:p.F295Y	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.530681402	2	0.998522	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	69575824	12A2p6	cell line	sgMsh2	69575824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	182	0	0	NA	exonic	B3galnt1	nonsynonymous SNV	B3galnt1:NM_020026:exon3:c.T103C:p.Y35H	3qE1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9995427	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	308	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	1.01E-09	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	76536248	12A2p6	cell line	sgMsh2	76536248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	241	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon8:c.T899C:p.F300S,Fstl5:NM_178673:exon8:c.T899C:p.F300S"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.9999929	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	76659695	12A2p6	cell line	sgMsh2	76659695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	291	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon14:c.T1645C:p.Y549H,Fstl5:NM_178673:exon14:c.T1645C:p.Y549H"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9999901	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	79512558	12A2p6	cell line	sgMsh2	79512558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	516	0	0	NA	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.T410C:p.M137T	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9999989	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	101	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9850479	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	79886907	12A2p6	cell line	sgMsh2	79886907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	82	0	0	NA	exonic	Gask1b	synonymous SNV	Gask1b:NM_133187:exon1:c.T681C:p.A227A	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9159305	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	339	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Vardict	2	0.131	133	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.615214723	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr3	82009540	12A2p6	cell line	sgMsh2	82009540	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	244	0	0	NA	exonic	Asic5	synonymous SNV	Asic5:NM_021370:exon6:c.T936A:p.T312T	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9988322	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr3	82359114	12A2p6	cell line	sgMsh2	82359114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	263	0	0	NA	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon2:c.C65A:p.T22N,Map9:NM_001356457:exon2:c.C65A:p.T22N"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.9941756	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	226	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9962687	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	184	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	8.83E-08	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr3	84172848	12A2p6	cell line	sgMsh2	84172848	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	226	0	0	NA	exonic	Trim2	nonsynonymous SNV	"Trim2:NM_001271725:exon9:c.C1865T:p.A622V,Trim2:NM_001271726:exon9:c.C1787T:p.A596V,Trim2:NM_001271727:exon9:c.C1787T:p.A596V,Trim2:NM_001271728:exon9:c.C1787T:p.A596V,Trim2:NM_030706:exon9:c.C1838T:p.A613V"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	0.9997935	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	495	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.192548119	3	1	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M6_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	300	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999957	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	86395233	12A2p6	cell line	sgMsh2	86395233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	216	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon35:c.T5599C:p.S1867P,Lrba:NM_001077688:exon35:c.T5599C:p.S1867P,Lrba:NM_030695:exon35:c.T5599C:p.S1867P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9999826	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	86641597	12A2p6	cell line	sgMsh2	86641597	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	214	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon45:c.C6893T:p.T2298I,Lrba:NM_001077688:exon45:c.C6893T:p.T2298I,Lrba:NM_030695:exon45:c.C6893T:p.T2298I"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.966264	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	87389666	12A2p6	cell line	sgMsh2	87389666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	351	0	0	NA	exonic	Fcrl1	synonymous SNV	"Fcrl1:NM_001136236:exon7:c.A792G:p.A264A,Fcrl1:NM_001310545:exon8:c.A921G:p.A307A,Fcrl1:NM_178165:exon8:c.A921G:p.A307A,Fcrl1:NM_153090:exon9:c.A981G:p.A327A"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999995	CAG	synonymous	CAG	9	CAGCAGCAG	NA
M6_p20	chr3	87754065	12A2p6	cell line	sgMsh2	87754065	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	86	0	0	NA	exonic	Pear1	synonymous SNV	"Pear1:NM_001032414:exon14:c.G1818A:p.R606R,Pear1:NM_001289600:exon14:c.G1581A:p.R527R,Pear1:NM_001032413:exon15:c.G1818A:p.R606R,Pear1:NM_001289601:exon16:c.G1062A:p.R354R,Pear1:NM_028460:exon16:c.G1818A:p.R606R,Pear1:NM_152799:exon16:c.G1818A:p.R606R"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.5563984	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr3	87814518	12A2p6	cell line	sgMsh2	87814518	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	62	0	0	NA	exonic	Insrr	nonsynonymous SNV	Insrr:NM_011832:exon21:c.C3598A:p.Q1200K	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.994416	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	87913145	12A2p6	cell line	sgMsh2	87913145	T	-	Deletion	Strelka2;Vardict	2	0.1557	244	0	0	NA	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.731213224	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M6_p20	chr3	88159205	12A2p6	cell line	sgMsh2	88159205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	104	0	0	NA	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310587:exon5:c.T480C:p.S160S,Mef2d:NM_001310593:exon5:c.T477C:p.S159S,Mef2d:NM_133665:exon5:c.T480C:p.S160S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5330158	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	88245865	12A2p6	cell line	sgMsh2	88245865	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	239	0	0	NA	exonic	Rhbg	nonsynonymous SNV	Rhbg:NM_021375:exon5:c.A781C:p.S261R	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.956495	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	106	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.756103591	1	0.6461012	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	88762296	12A2p6	cell line	sgMsh2	88762296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	118	0	0	NA	exonic	Syt11	nonsynonymous SNV	Syt11:NM_018804:exon2:c.A288G:p.I96M	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9913028	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	88912863	12A2p6	cell line	sgMsh2	88912863	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	213	0	0	NA	exonic	Msto1	synonymous SNV	Msto1:NM_144898:exon3:c.A285G:p.V95V	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999988	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	89092053	12A2p6	cell line	sgMsh2	89092053	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	112	0	0	NA	exonic	Rusc1	nonsynonymous SNV	"Rusc1:NM_001083807:exon2:c.G421A:p.G141S,Rusc1:NM_028188:exon2:c.G421A:p.G141S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.8107553	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Vardict	2	0.13	33	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.7267751	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M6_p20	chr3	89168917	12A2p6	cell line	sgMsh2	89168917	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	53	0	0	NA	exonic	Clk2;Gm45927	synonymous SNV	"Clk2:NM_001163432:exon3:c.A390G:p.S130S,Gm45927:NM_001310016:exon3:c.A393G:p.S131S,Clk2:NM_007712:exon3:c.A393G:p.S131S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.8070422	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr3	89231181	12A2p6	cell line	sgMsh2	89231181	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	117	0	0	NA	exonic	Muc1	stopgain	Muc1:NM_013605:exon2:c.C1329A:p.Y443X	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9846958	ACT	nonsynonymous	ACT	8	ACTACTAC	NA
M6_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	67	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.009792339	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	89344764	12A2p6	cell line	sgMsh2	89344764	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	54	0	0	NA	exonic	Adam15	nonsynonymous SNV	"Adam15:NM_001037722:exon11:c.A1093C:p.S365R,Adam15:NM_009614:exon11:c.A1093C:p.S365R"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	9.50E-05	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	89380595	12A2p6	cell line	sgMsh2	89380595	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.107	81	0	0	NA	exonic	Zbtb7b	nonsynonymous SNV	"Zbtb7b:NM_001355211:exon2:c.G915T:p.E305D,Zbtb7b:NM_001355212:exon2:c.G915T:p.E305D,Zbtb7b:NM_009565:exon2:c.G915T:p.E305D,Zbtb7b:NM_001355206:exon3:c.G1104T:p.E368D"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.8760948	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	89735373	12A2p6	cell line	sgMsh2	89735373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	104	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001146296:exon2:c.T560C:p.L187P,Adar:NM_001357958:exon2:c.T677C:p.L226P,Adar:NM_019655:exon2:c.T560C:p.L187P"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.5710327	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	89948174	12A2p6	cell line	sgMsh2	89948174	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	197	0	0	NA	exonic	Atp8b2	nonsynonymous SNV	"Atp8b2:NM_001368650:exon15:c.T1572A:p.N524K,Atp8b2:NM_001081182:exon16:c.T1515A:p.N505K"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	0.9993317	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	90000921	12A2p6	cell line	sgMsh2	90000921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	127	0	0	NA	exonic	Ubap2l	nonsynonymous SNV	"Ubap2l:NM_001357307:exon27:c.A3272G:p.N1091S,Ubap2l:NM_001165983:exon28:c.A3314G:p.N1105S,Ubap2l:NM_001165984:exon28:c.A3299G:p.N1100S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	8.51E-08	GTT	nonsynonymous	AGCTGT	12	AGCTGTAGCTGT	NA
M6_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	64	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9952465	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	185	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9288917	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	233	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.366311056	3	0.9994649	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	90609932	12A2p6	cell line	sgMsh2	90609932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	223	0	0	NA	exonic	S100a5	nonsynonymous SNV	S100a5:NM_011312:exon2:c.T109G:p.L37V	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.9764203	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	90657760	12A2p6	cell line	sgMsh2	90657760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	275	0	0	NA	exonic	S100a7a	synonymous SNV	S100a7a:NM_199422:exon3:c.G261A:p.K87K	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.300562918	3	0.9999999	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr3	92433547	12A2p6	cell line	sgMsh2	92433547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	227	0	0	NA	exonic	Sprr2k	nonsynonymous SNV	Sprr2k:NM_011477:exon2:c.A203G:p.K68R	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.9999981	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	427	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.206637006	3	1	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr3	93018577	12A2p6	cell line	sgMsh2	93018577	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	78	0	0	NA	exonic	Lce1m	nonsynonymous SNV	"Lce1m:NM_001355725:exon2:c.A52G:p.T18A,Lce1m:NM_025420:exon2:c.A52G:p.T18A"	3qF1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.403881421	3	7.81E-05	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	93214656	12A2p6	cell line	sgMsh2	93214656	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	408	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon6:c.G4132T:p.G1378W	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9977008	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	93397005	12A2p6	cell line	sgMsh2	93397005	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	512	0	0	NA	exonic	Rptn	synonymous SNV	Rptn:NM_009100:exon3:c.C1644T:p.G548G	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9999466	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr3	93443526	12A2p6	cell line	sgMsh2	93443526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	130	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A272G:p.Q91R	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.8856321	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	94486600	12A2p6	cell line	sgMsh2	94486600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	70	0	0	NA	exonic	Celf3	nonsynonymous SNV	"Celf3:NM_001379256:exon5:c.C335T:p.A112V,Celf3:NM_001289613:exon6:c.C563T:p.A188V,Celf3:NM_001357784:exon6:c.C563T:p.A188V,Celf3:NM_172434:exon6:c.C560T:p.A187V,Celf3:NM_001289616:exon7:c.C332T:p.A111V,Celf3:NM_001289620:exon7:c.C332T:p.A111V,Celf3:NM_001357785:exon7:c.C335T:p.A112V,Celf3:NM_001357786:exon7:c.C335T:p.A112V,Celf3:NM_001379249:exon7:c.C563T:p.A188V,Celf3:NM_001379250:exon7:c.C560T:p.A187V,Celf3:NM_001379251:exon7:c.C332T:p.A111V,Celf3:NM_001379252:exon7:c.C335T:p.A112V,Celf3:NM_001379253:exon7:c.C335T:p.A112V,Celf3:NM_001379254:exon7:c.C332T:p.A111V,Celf3:NM_001379255:exon7:c.C335T:p.A112V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9970698	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	495	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.305259214	3	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	94999049	12A2p6	cell line	sgMsh2	94999049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	314	0	0	NA	exonic	Pi4kb	nonsynonymous SNV	"Pi4kb:NM_001293716:exon7:c.C955T:p.R319C,Pi4kb:NM_175356:exon8:c.C1906T:p.R636C,Pi4kb:NM_001293715:exon9:c.C1951T:p.R651C"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.8619836	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	106	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	6.71E-06	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	253	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95288332	12A2p6	cell line	sgMsh2	95288332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	178	0	0	NA	exonic	Mindy1	nonsynonymous SNV	"Mindy1:NM_133858:exon2:c.A385G:p.I129V,Mindy1:NM_199475:exon2:c.A385G:p.I129V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9976378	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95324761	12A2p6	cell line	sgMsh2	95324761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	187	0	0	NA	exonic	Setdb1	nonsynonymous SNV	"Setdb1:NM_001163641:exon20:c.A3589G:p.T1197A,Setdb1:NM_001163642:exon20:c.A3586G:p.T1196A,Setdb1:NM_018877:exon20:c.A3589G:p.T1197A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.8446953	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M6_p20	chr3	95355990	12A2p6	cell line	sgMsh2	95355990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	193	0	0	NA	exonic	Setdb1	synonymous SNV	"Setdb1:NM_001163641:exon2:c.A204G:p.V68V,Setdb1:NM_001163642:exon2:c.A204G:p.V68V,Setdb1:NM_018877:exon2:c.A204G:p.V68V"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.7767188	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	362	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	360	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9999973	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	121	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999526	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	179	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.838877	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	96173985	12A2p6	cell line	sgMsh2	96173985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	122	0	0	NA	exonic	Sf3b4	nonsynonymous SNV	Sf3b4:NM_153053:exon3:c.A608G:p.Q203R	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.8920116	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	96188350	12A2p6	cell line	sgMsh2	96188350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	141	0	0	NA	exonic	Sv2a	synonymous SNV	Sv2a:NM_022030:exon5:c.T981C:p.A327A	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999906	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr3	96220087	12A2p6	cell line	sgMsh2	96220087	T	C	SNV	Mutect2;Vardict	2	0.089	109	0	0	NA	exonic	H2ac21	nonsynonymous SNV	H2ac21:NM_178213:exon1:c.T172C:p.Y58H	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.7399227	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	96440748	12A2p6	cell line	sgMsh2	96440748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	97	0	0	NA	exonic	BC107364	nonsynonymous SNV	"BC107364:NM_001256180:exon3:c.A224G:p.N75S,BC107364:NM_001256181:exon3:c.A224G:p.N75S"	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996696	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	96526589	12A2p6	cell line	sgMsh2	96526589	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	51	0	0	NA	exonic	Hjv	synonymous SNV	Hjv:NM_027126:exon2:c.C75T:p.L25L	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.441451786	2	0.5761021	TCC	synonymous	CTG	8	CTGCTGCT	NA
M6_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	208	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.9999112	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr3	96656998	12A2p6	cell line	sgMsh2	96656998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	371	0	0	NA	exonic	Itga10	nonsynonymous SNV	Itga10:NM_001302471:exon23:c.T2806C:p.Y936H	3qF2.1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.286474031	3	1.06E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	137	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.248903666	3	0.9999632	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	239	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	4.37E-09	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr3	99939331	12A2p6	cell line	sgMsh2	99939331	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.147	227	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon2:c.G170A:p.R57Q	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9733621	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	100021766	12A2p6	cell line	sgMsh2	100021766	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	165	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon12:c.G1611T:p.K537N	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.413274012	3	0.09797038	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	100159792	12A2p6	cell line	sgMsh2	100159792	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.215	20	0	0	NA	exonic	Wdr3	stopgain	Wdr3:NM_175552:exon3:c.G355T:p.G119X	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.854985	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	100161037	12A2p6	cell line	sgMsh2	100161037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	249	0	0	NA	exonic	Wdr3	nonsynonymous SNV	Wdr3:NM_175552:exon2:c.T154A:p.L52I	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9998903	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	100924998	12A2p6	cell line	sgMsh2	100924998	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	131	0	0	NA	exonic	Trim45	synonymous SNV	"Trim45:NM_001165952:exon2:c.C546T:p.Y182Y,Trim45:NM_001165953:exon2:c.C546T:p.Y182Y,Trim45:NM_194343:exon2:c.C546T:p.Y182Y"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.314651805	3	0.9984824	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	127	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999709	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	101056312	12A2p6	cell line	sgMsh2	101056312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	83	0	0	NA	exonic	Ptgfrn	synonymous SNV	Ptgfrn:NM_011197:exon6:c.T1983C:p.S661S	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.978569	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr3	103056908	12A2p6	cell line	sgMsh2	103056908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	384	0	0	NA	exonic	Csde1	nonsynonymous SNV	"Csde1:NM_001310693:exon18:c.T1982C:p.I661T,Csde1:NM_001161854:exon19:c.T2279C:p.I760T,Csde1:NM_144901:exon20:c.T2372C:p.I791T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.521288811	2	0.9999295	ATC	nonsynonymous	AGAA	11	AGAAAGAAAGA	NA
M6_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	117	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999345	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	420	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.253599962	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	104054483	12A2p6	cell line	sgMsh2	104054483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	64	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon9:c.G1228A:p.V410I,Magi3:NM_133853:exon9:c.G1228A:p.V410I"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.7281637	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	155	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9980937	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	115	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.999923	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	105716778	12A2p6	cell line	sgMsh2	105716778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	46	0	0	NA	exonic	Inka2	nonsynonymous SNV	"Inka2:NM_001163356:exon2:c.A410G:p.Q137R,Inka2:NM_175398:exon2:c.A467G:p.Q156R"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.995614666	1	0.9786203	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	105951690	12A2p6	cell line	sgMsh2	105951690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	174	0	0	NA	exonic	Atp5pb	synonymous SNV	"Atp5pb:NM_009725:exon5:c.A414G:p.V138V,Atp5pb:NM_001304719:exon6:c.A339G:p.V113V"	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9997626	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	105987076	12A2p6	cell line	sgMsh2	105987076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	218	0	0	NA	exonic	Ovgp1	stoploss	Ovgp1:NM_007696:exon11:c.T2164C:p.X722R	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	0.5795095	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	106128164	12A2p6	cell line	sgMsh2	106128164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	388	0	0	NA	exonic	Chia1	synonymous SNV	Chia1:NM_023186:exon6:c.T495G:p.A165A	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.9846876	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr3	106164096	12A2p6	cell line	sgMsh2	106164096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.048	970	0	0	NA	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon3:c.A251G:p.K84R	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.225422188	3	1	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	106164811	12A2p6	cell line	sgMsh2	106164811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	709	0	0	NA	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon2:c.T47C:p.V16A	3qF2.2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.389792534	3	1.59E-08	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	169	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.8798725	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	106822035	12A2p6	cell line	sgMsh2	106822035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	236	0	0	NA	exonic	Olfr266	nonsynonymous SNV	Olfr266:NM_146489:exon1:c.A523C:p.N175H	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.850029502	1	0.9997024	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.9998529	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr3	107447981	12A2p6	cell line	sgMsh2	107447981	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	147	0	0	NA	exonic	Kcnc4	stopgain	"Kcnc4:NM_001356447:exon2:c.G1150T:p.E384X,Kcnc4:NM_145922:exon2:c.G1150T:p.E384X"	3qF2.3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.8650952	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	238	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.9162931	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.09	117	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.7240711	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	108464426	12A2p6	cell line	sgMsh2	108464426	T	-	Deletion	Mutect2;Vardict	2	0.177	51	0	0	NA	exonic	Elapor1	frameshift deletion	"Elapor1:NM_001033304:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001358065:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001346518:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358063:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358064:exon16:c.2131delA:p.M711Wfs*37"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.83124432	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	162	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9979304	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	108756837	12A2p6	cell line	sgMsh2	108756837	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	96	0	0	NA	exonic	Aknad1	nonsynonymous SNV	Aknad1:NM_177859:exon4:c.A1115T:p.K372I	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9368143	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	108883558	12A2p6	cell line	sgMsh2	108883558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	402	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon3:c.A151G:p.T51A,Fndc7:NM_177091:exon3:c.A151G:p.T51A"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.6536706	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	109628125	12A2p6	cell line	sgMsh2	109628125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	247	0	0	NA	exonic	Vav3	synonymous SNV	"Vav3:NM_146139:exon3:c.T192G:p.T64T,Vav3:NM_001378987:exon20:c.T1872G:p.T624T,Vav3:NM_020505:exon20:c.T1872G:p.T624T"	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.892296163	1	0.9999923	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr3	114182647	12A2p6	cell line	sgMsh2	114182647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	115	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon49:c.T3737G:p.V1246G	3qF3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.5526209	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	134	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.324044396	3	0.9979321	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	61	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.918152	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	116605233	12A2p6	cell line	sgMsh2	116605233	T	-	Deletion	Mutect2;Vardict	2	0.186	56	0	0	NA	exonic	Sass6	frameshift deletion	"Sass6:NM_001289571:exon2:c.58delT:p.L22Cfs*13,Sass6:NM_028349:exon3:c.163delT:p.L57Cfs*13"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.87351098	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	203	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9998551	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	116895535	12A2p6	cell line	sgMsh2	116895535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	222	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.T1054C:p.Y352H,Frrs1:NM_009146:exon10:c.T1054C:p.Y352H"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9670489	ATA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	151	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.3193481	3	0.9993352	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	117575905	12A2p6	cell line	sgMsh2	117575905	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.159	35	0	0	NA	exonic	Plppr5	synonymous SNV	"Plppr5:NM_001305451:exon1:c.G210A:p.S70S,Plppr5:NM_029425:exon1:c.G210A:p.S70S"	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	0.5482644	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr3	117800890	12A2p6	cell line	sgMsh2	117800890	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	216	0	0	NA	exonic	Snx7	nonsynonymous SNV	Snx7:NM_029655:exon8:c.G1211T:p.R404M	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.901688754	1	0.9999826	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	121729520	12A2p6	cell line	sgMsh2	121729520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	65	0	0	NA	exonic	F3	synonymous SNV	F3:NM_010171:exon3:c.T378C:p.F126F	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.6291211	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr3	122262639	12A2p6	cell line	sgMsh2	122262639	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	177	0	0	NA	exonic	Gclm	nonsynonymous SNV	Gclm:NM_008129:exon5:c.T377G:p.I126S	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.328740692	3	0.9996857	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	123112816	12A2p6	cell line	sgMsh2	123112816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	236	0	0	NA	exonic	Synpo2	synonymous SNV	Synpo2:NM_080451:exon4:c.A2850G:p.K950K	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.633999905	2	0.9996424	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr3	123360923	12A2p6	cell line	sgMsh2	123360923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	187	0	0	NA	exonic	Sec24d	nonsynonymous SNV	Sec24d:NM_027135:exon21:c.T2780C:p.M927T	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9985408	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	248	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	0.9999999	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	125437880	12A2p6	cell line	sgMsh2	125437880	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	141	0	0	NA	exonic	Ndst4	synonymous SNV	Ndst4:NM_022565:exon2:c.C97T:p.L33L	3qG1	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	0.9960875	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	182	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.338133283	3	0.9995326	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr3	126943351	12A2p6	cell line	sgMsh2	126943351	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	186	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001327939:exon37:c.C8622T:p.S2874S,Ank2:NM_001327938:exon39:c.C8868T:p.S2956S"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9996843	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr3	126981840	12A2p6	cell line	sgMsh2	126981840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	254	0	0	NA	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_178655:exon4:c.A139C:p.N47H,Ank2:NM_001327938:exon24:c.A2641C:p.N881H,Ank2:NM_001327939:exon24:c.A2491C:p.N831H"	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9977672	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	127546742	12A2p6	cell line	sgMsh2	127546742	C	G	SNV	Mutect2;MuSe;Vardict	3	0.12	187	0	0	NA	exonic	Larp7	nonsynonymous SNV	Larp7:NM_138593:exon5:c.G446C:p.S149T	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9996265	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	272	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	1.56E-08	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr3	127815622	12A2p6	cell line	sgMsh2	127815622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	125	0	0	NA	exonic	Ap1ar	nonsynonymous SNV	Ap1ar:NM_145964:exon6:c.G349A:p.A117T	3qG2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.8901705	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	238	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9999515	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	64	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	0.6370978	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	130033850	12A2p6	cell line	sgMsh2	130033850	-	G	Insertion	Strelka2;Vardict	2	0.1562	160	0	0	NA	exonic	Sec24b	frameshift insertion	Sec24b:NM_207209:exon3:c.998dupC:p.E334Rfs*5	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.733561372	NA	NA	CTG	frameshift	G	8	GGGGGGGG	1
M6_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	304	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9999477	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	157	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.23481478	3	0.9999967	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	240	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.267688849	3	0.9999999	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	198	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.8018339	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr3	133485665	12A2p6	cell line	sgMsh2	133485665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	232	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.A3007G:p.T1003A,Tet2:NM_001346736:exon3:c.A3007G:p.T1003A"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.896992458	1	0.999989	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	133486751	12A2p6	cell line	sgMsh2	133486751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	280	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.T1921C:p.Y641H,Tet2:NM_001346736:exon3:c.T1921C:p.Y641H"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.770192477	1	0.9284272	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	134829477	12A2p6	cell line	sgMsh2	134829477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	121	0	0	NA	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.T205C:p.S69P	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.8503811	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	135326185	12A2p6	cell line	sgMsh2	135326185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	77	0	0	NA	exonic	Slc9b2	nonsynonymous SNV	Slc9b2:NM_178877:exon7:c.A805G:p.T269A	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	1	1	0.998335	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	222	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9711268	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	132	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	8.07E-06	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	138282520	12A2p6	cell line	sgMsh2	138282520	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	262	0	0	NA	exonic	Adh1	nonsynonymous SNV	Adh1:NM_007409:exon4:c.G344A:p.S115N	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9726424	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	173	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	0.999955	AAA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr3	138480720	12A2p6	cell line	sgMsh2	138480720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	422	0	0	NA	exonic	Metap1	nonsynonymous SNV	Metap1:NM_175224:exon3:c.T247C:p.Y83H	3qG3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.998993	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	144696887	12A2p6	cell line	sgMsh2	144696887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	385	0	0	NA	exonic	Sh3glb1	nonsynonymous SNV	"Sh3glb1:NM_001282042:exon7:c.A728G:p.Q243R,Sh3glb1:NM_001379173:exon7:c.A728G:p.Q243R,Sh3glb1:NM_019464:exon7:c.A728G:p.Q243R,Sh3glb1:NM_001282037:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379170:exon9:c.A839G:p.Q280R,Sh3glb1:NM_001379171:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379172:exon9:c.A791G:p.Q264R,Sh3glb1:NM_001379174:exon9:c.A839G:p.Q280R"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.71383693	2	0.9667671	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Vardict	2	0.05	386	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.23481478	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;MuSe;Vardict	3	0.087	377	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.408577717	3	0.9986454	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	144952971	12A2p6	cell line	sgMsh2	144952971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	87	0	0	NA	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon14:c.T2482C:p.F828L	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.840636911	1	0.9447729	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	144963643	12A2p6	cell line	sgMsh2	144963643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	318	0	0	NA	exonic	Clca4a	synonymous SNV	Clca4a:NM_207208:exon7:c.T1146C:p.N382N	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999995	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	134	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.7528605	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr3	145889211	12A2p6	cell line	sgMsh2	145889211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	140	0	0	NA	exonic	Ddah1	nonsynonymous SNV	Ddah1:NM_026993:exon5:c.A725G:p.Y242C	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.6697377	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	145930531	12A2p6	cell line	sgMsh2	145930531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	61	0	0	NA	exonic	Bcl10	nonsynonymous SNV	Bcl10:NM_009740:exon2:c.T183A:p.S61R	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.915777641	1	0.970212	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	140	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.9632894	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	146650711	12A2p6	cell line	sgMsh2	146650711	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	130	0	0	NA	exonic	4930503B20Rik	frameshift deletion	4930503B20Rik:NM_029144:exon1:c.441delC:p.I148Sfs*27	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.915777641	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr3	146913305	12A2p6	cell line	sgMsh2	146913305	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	68	0	0	NA	exonic	Ttll7	frameshift deletion	"Ttll7:NM_001302957:exon9:c.964delC:p.S325Afs*47,Ttll7:NM_001302958:exon9:c.964delC:p.S325Afs*47,Ttll7:NM_001357217:exon9:c.964delC:p.S325Afs*47"	3qH2	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.892296163	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6_p20	chr3	148837574	12A2p6	cell line	sgMsh2	148837574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	209	0	0	NA	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon13:c.G2513T:p.R838M	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9998459	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	151541023	12A2p6	cell line	sgMsh2	151541023	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	374	0	0	NA	exonic	Adgrl4	nonsynonymous SNV	Adgrl4:NM_133222:exon14:c.A1959C:p.K653N	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9998494	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	151732442	12A2p6	cell line	sgMsh2	151732442	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	212	0	0	NA	exonic	Ifi44	nonsynonymous SNV	Ifi44:NM_133871:exon8:c.G1207A:p.A403T	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.8904804	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	152226131	12A2p6	cell line	sgMsh2	152226131	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	103	0	0	NA	exonic	Fubp1	nonsynonymous SNV	"Fubp1:NM_001355369:exon17:c.A1616G:p.H539R,Fubp1:NM_001355370:exon17:c.A1613G:p.H538R,Fubp1:NM_001355371:exon17:c.A1616G:p.H539R,Fubp1:NM_001355372:exon17:c.A1616G:p.H539R,Fubp1:NM_001355373:exon17:c.A1616G:p.H539R,Fubp1:NM_001355374:exon17:c.A1613G:p.H538R,Fubp1:NM_057172:exon17:c.A1613G:p.H538R,Fubp1:NM_001355366:exon18:c.A1679G:p.H560R,Fubp1:NM_001355367:exon18:c.A1676G:p.H559R,Fubp1:NM_001355368:exon18:c.A1679G:p.H560R"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	0.9650759	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	152278905	12A2p6	cell line	sgMsh2	152278905	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	114	0	0	NA	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon13:c.T1380G:p.C460W,Miga1:NM_174868:exon15:c.T1572G:p.C524W"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.324044396	3	0.9942715	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	152382963	12A2p6	cell line	sgMsh2	152382963	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	219	0	0	NA	exonic	Usp33	synonymous SNV	"Usp33:NM_001076676:exon20:c.T2238G:p.P746P,Usp33:NM_001252486:exon20:c.T2238G:p.P746P,Usp33:NM_001355666:exon20:c.T2262G:p.P754P,Usp33:NM_133247:exon20:c.T2262G:p.P754P"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.9436433	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr3	152785494	12A2p6	cell line	sgMsh2	152785494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	185	0	0	NA	exonic	Pigk	synonymous SNV	"Pigk:NM_025662:exon11:c.T1170C:p.H390H,Pigk:NM_178016:exon12:c.T1311C:p.H437H"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.94865171	1	0.9999947	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr3	153907632	12A2p6	cell line	sgMsh2	153907632	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	308	0	0	NA	exonic	Rabggtb	nonsynonymous SNV	"Rabggtb:NM_001163479:exon7:c.G845T:p.R282M,Rabggtb:NM_011231:exon8:c.G989T:p.R330M,Rabggtb:NM_001163478:exon9:c.G965T:p.R322M"	3qH3	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.9995958	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.094	101	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	0.5065816	CCA	synonymous	C	5	CCCCC	NA
M6_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	638	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.356918465	3	1.04E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	154622253	12A2p6	cell line	sgMsh2	154622253	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.133	69	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon9:c.T991G:p.L331V,Cryz:NM_001357673:exon9:c.T991G:p.L331V,Cryz:NM_001357674:exon9:c.T991G:p.L331V,Cryz:NM_001357675:exon9:c.T991G:p.L331V,Cryz:NM_001357676:exon9:c.T991G:p.L331V,Cryz:NM_009968:exon9:c.T991G:p.L331V"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9115452	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	154748360	12A2p6	cell line	sgMsh2	154748360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	198	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1171C:p.Y391H	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9974266	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	134	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.385096239	3	0.9568287	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	121	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.8991961	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	229	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.300562918	3	0.9999979	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	96	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.5018081	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	155187768	12A2p6	cell line	sgMsh2	155187768	G	-	Deletion	Mutect2;Vardict	2	0.094	160	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon7:c.1105delG:p.A370Qfs*2	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.441451786	NA	NA	CGG	frameshift	NA	NA	NA	-1
M6_p20	chr3	157146312	12A2p6	cell line	sgMsh2	157146312	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	80	0	0	NA	exonic	Negr1	synonymous SNV	"Negr1:NM_001039094:exon5:c.G750A:p.E250E,Negr1:NM_177274:exon5:c.G750A:p.E250E"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.6485879	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	106	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9907236	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	157546722	12A2p6	cell line	sgMsh2	157546722	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.095	95	0	0	NA	exonic	Zranb2	nonsynonymous SNV	"Zranb2:NM_001355381:exon9:c.G770A:p.S257N,Zranb2:NM_017381:exon10:c.G977A:p.S326N"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.446148081	2	8.94E-05	AGT	nonsynonymous	GTTCAA	12	GTTCAAGTTCAA	NA
M6_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.086	210	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.403881421	3	0.9770577	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	158031539	12A2p6	cell line	sgMsh2	158031539	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	17	0	0	NA	exonic	Srsf11	nonsynonymous SNV	"Srsf11:NM_001093753:exon1:c.A95C:p.N32T,Srsf11:NM_001379533:exon1:c.A95C:p.N32T,Srsf11:NM_001093752:exon2:c.A200C:p.N67T,Srsf11:NM_001379531:exon2:c.A200C:p.N67T,Srsf11:NM_001379532:exon2:c.A200C:p.N67T"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	2	1	1	0.821154	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	158054594	12A2p6	cell line	sgMsh2	158054594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	433	0	0	NA	exonic	Lrrc40	synonymous SNV	"Lrrc40:NM_001289525:exon6:c.T337C:p.L113L,Lrrc40:NM_001359763:exon7:c.T622C:p.L208L,Lrrc40:NM_001289524:exon8:c.T337C:p.L113L,Lrrc40:NM_024194:exon8:c.T991C:p.L331L"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.770192477	1	0.9796361	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr3	158160311	12A2p6	cell line	sgMsh2	158160311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	132	0	0	NA	exonic	Lrrc7	synonymous SNV	"Lrrc7:NM_001370781:exon21:c.A3891G:p.G1297G,Lrrc7:NM_001370782:exon21:c.A3891G:p.G1297G,Lrrc7:NM_001081358:exon22:c.A3792G:p.G1264G,Lrrc7:NM_001291452:exon22:c.A3792G:p.G1264G,Lrrc7:NM_001291453:exon22:c.A3792G:p.G1264G"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.9879964	CTC	synonymous	CTCTC	11	CTCTCCTCTCC	NA
M6_p20	chr3	159515518	12A2p6	cell line	sgMsh2	159515518	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	196	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A485T:p.K162M,Depdc1a:NM_001172093:exon4:c.A485T:p.K162M,Depdc1a:NM_029523:exon4:c.A485T:p.K162M"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9668964	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr3	159515569	12A2p6	cell line	sgMsh2	159515569	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	248	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A536C:p.N179T,Depdc1a:NM_001172093:exon4:c.A536C:p.N179T,Depdc1a:NM_029523:exon4:c.A536C:p.N179T"	3qH4	chr3-10012637-159913826	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999618	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	198	0	0	NA	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.371007352	3	0.9974007	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	6381056	12A2p6	cell line	sgMsh2	6381056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	223	0	0	NA	exonic	Sdcbp	nonsynonymous SNV	"Sdcbp:NM_001098227:exon4:c.T200C:p.I67T,Sdcbp:NM_016807:exon4:c.T200C:p.I67T"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.887599867	1	0.999967	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	8866542	12A2p6	cell line	sgMsh2	8866542	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	78	0	0	NA	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon37:c.A5143T:p.N1715Y,Chd7:NM_001277149:exon38:c.A8848T:p.N2950Y"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.521288811	2	0.9182585	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.128	69	0	0	NA	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.601125836	2	0.9371999	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	11165096	12A2p6	cell line	sgMsh2	11165096	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	168	0	0	NA	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.G119A:p.C40Y,Trp53inp1:NM_021897:exon3:c.G119A:p.C40Y"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.87351098	1	0.99915	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	11165105	12A2p6	cell line	sgMsh2	11165105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	172	0	0	NA	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.T128G:p.F43C,Trp53inp1:NM_021897:exon3:c.T128G:p.F43C"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.939259119	1	0.9999795	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	11292592	12A2p6	cell line	sgMsh2	11292592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	272	0	0	NA	exonic	Dpy19l4	synonymous SNV	Dpy19l4:NM_001081201:exon8:c.C829T:p.L277L	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.572948062	2	0.9999947	AGC	synonymous	AGC	11	AGCAGCAGCAG	NA
M6_p20	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	244	0	0	NA	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.633999905	2	0.9997282	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	12164156	12A2p6	cell line	sgMsh2	12164156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	223	0	0	NA	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon5:c.A670G:p.T224A,Cibar1:NM_026558:exon5:c.A682G:p.T228A"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.995614666	1	1.77E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	12168245	12A2p6	cell line	sgMsh2	12168245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	155	0	0	NA	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon4:c.A617G:p.N206S,Cibar1:NM_026558:exon4:c.A617G:p.N206S"	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.417970308	3	0.854529	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	14506466	12A2p6	cell line	sgMsh2	14506466	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.252	179	0	0	NA	exonic	Slc26a7	frameshift insertion	Slc26a7:NM_145947:exon18:c.1881dupA:p.P628Tfs*4	4qA1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6_p20	chr4	15976113	12A2p6	cell line	sgMsh2	15976113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	75	0	0	NA	exonic	Nbn	nonsynonymous SNV	Nbn:NM_013752:exon9:c.T1073C:p.V358A	4qA2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.845333207	1	0.9296549	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	15981361	12A2p6	cell line	sgMsh2	15981361	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	108	0	0	NA	exonic	Nbn	synonymous SNV	Nbn:NM_013752:exon11:c.G1452A:p.E484E	4qA2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998644	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	292	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.39448883	3	0.9985164	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	18115973	12A2p6	cell line	sgMsh2	18115973	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	249	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon10:c.C1576A:p.L526I,Mmp16:NM_001379518:exon11:c.C1576A:p.L526I,Mmp16:NM_001379519:exon11:c.C1576A:p.L526I"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.535377698	2	0.9995723	CCT	nonsynonymous	ATCC	8	ATCCATCC	NA
M6_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	122	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999563	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	19366491	12A2p6	cell line	sgMsh2	19366491	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	85	0	0	NA	exonic	Cngb3	nonsynonymous SNV	Cngb3:NM_013927:exon5:c.C551T:p.P184L	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.915777641	1	0.9917506	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	167	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.535377698	2	0.9955877	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	248	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.460236968	2	0.6706146	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	238	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.35222217	3	0.999873	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	25207152	12A2p6	cell line	sgMsh2	25207152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	0	0	NA	exonic	Fhl5	synonymous SNV	"Fhl5:NM_001355498:exon5:c.T615C:p.D205D,Fhl5:NM_021318:exon5:c.T615C:p.D205D,Fhl5:NM_001379528:exon6:c.T615C:p.D205D"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999942	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr4	25250638	12A2p6	cell line	sgMsh2	25250638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	114	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon19:c.A2214G:p.L738L,Ufl1:NM_026194:exon19:c.A2214G:p.L738L"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999165	CTA	synonymous	TGAC	9	TGACTGACT	NA
M6_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	83	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.432059195	3	0.5486217	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr4	31979762	12A2p6	cell line	sgMsh2	31979762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_009316:exon5:c.T370C:p.Y124H,Map3k7:NM_172688:exon5:c.T370C:p.Y124H"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.999761	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	32722967	12A2p6	cell line	sgMsh2	32722967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	108	0	0	NA	exonic	Mdn1	synonymous SNV	Mdn1:NM_001081392:exon48:c.A7281G:p.T2427T	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.981525779	1	0.9997458	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	33944549	12A2p6	cell line	sgMsh2	33944549	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	246	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T936G:p.R312R,Cnr1:NM_001365881:exon2:c.T936G:p.R312R,Cnr1:NM_007726:exon2:c.T936G:p.R312R,Cnr1:NM_001355021:exon6:c.T936G:p.R312R"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.727925817	2	0.7316136	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	196	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	39451164	12A2p6	cell line	sgMsh2	39451164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	158	0	0	NA	exonic	1700009N14Rik	synonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A369G:p.K123K	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.972133188	1	0.9999905	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	40177796	12A2p6	cell line	sgMsh2	40177796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	158	0	0	NA	exonic	Aco1	synonymous SNV	Aco1:NM_007386:exon8:c.A816G:p.G272G	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.94865171	1	0.9999695	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	249	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.309955509	3	0.9999985	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	41121239	12A2p6	cell line	sgMsh2	41121239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	88	0	0	NA	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon7:c.T1016C:p.V339A	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9993158	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	41379393	12A2p6	cell line	sgMsh2	41379393	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	100	0	0	NA	exonic	Ubap1	synonymous SNV	"Ubap1:NM_001290454:exon4:c.G606A:p.R202R,Ubap1:NM_001355508:exon4:c.G606A:p.R202R,Ubap1:NM_023305:exon4:c.G606A:p.R202R"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.497807333	2	0.8907509	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr4	41388100	12A2p6	cell line	sgMsh2	41388100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	151	0	0	NA	exonic	Ubap1	nonsynonymous SNV	"Ubap1:NM_001290454:exon5:c.T1088C:p.L363P,Ubap1:NM_001355509:exon5:c.T347C:p.L116P,Ubap1:NM_001355508:exon6:c.T1271C:p.L424P,Ubap1:NM_023305:exon6:c.T1271C:p.L424P"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.821851729	1	0.9804346	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Vardict	2	0.082	108	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.385096239	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6_p20	chr4	41769953	12A2p6	cell line	sgMsh2	41769953	T	A	SNV	Mutect2;Vardict	2	0.125	46	0	0	NA	exonic	Ccl27a	nonsynonymous SNV	"Ccl27a:NM_011336:exon2:c.A97T:p.S33C,Ccl27a:NM_001361246:exon4:c.A229T:p.S77C,Ccl27a:NM_001048179:exon5:c.A229T:p.S77C,Ccl27a:NM_001347065:exon5:c.A118T:p.S40C"	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.587036949	2	0.8478593	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	43654396	12A2p6	cell line	sgMsh2	43654396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	148	0	0	NA	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon5:c.A416G:p.K139R	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999947	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	153	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.300562918	3	0.9997973	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	44993453	12A2p6	cell line	sgMsh2	44993453	T	C	SNV	Mutect2;MuSe;Vardict	3	0.099	100	0	0	NA	exonic	Zbtb5	nonsynonymous SNV	"Zbtb5:NM_001163283:exon2:c.A1930G:p.S644G,Zbtb5:NM_001163284:exon2:c.A1930G:p.S644G,Zbtb5:NM_173399:exon2:c.A1930G:p.S644G"	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.464933264	2	0.7035617	CTG	nonsynonymous	GACT	10	GACTGACTGA	NA
M6_p20	chr4	44994084	12A2p6	cell line	sgMsh2	44994084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	45	0	0	NA	exonic	Zbtb5	synonymous SNV	"Zbtb5:NM_001163283:exon2:c.T1299C:p.C433C,Zbtb5:NM_001163284:exon2:c.T1299C:p.C433C,Zbtb5:NM_173399:exon2:c.T1299C:p.C433C"	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9782528	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Vardict	2	0.059	302	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.27708144	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr4	45399331	12A2p6	cell line	sgMsh2	45399331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	417	0	0	NA	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.C807A:p.L269L	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.723229521	2	0.9191445	AGA	synonymous	NA	NA	NA	NA
M6_p20	chr4	45399489	12A2p6	cell line	sgMsh2	45399489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	130	0	0	NA	exonic	Slc25a51	nonsynonymous SNV	Slc25a51:NM_001009949:exon3:c.A649G:p.I217V	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.995614666	1	0.9999726	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	45444765	12A2p6	cell line	sgMsh2	45444765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	64	0	0	NA	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon5:c.T1242C:p.A414A	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.934562823	1	0.9824546	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	45458236	12A2p6	cell line	sgMsh2	45458236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	74	0	0	NA	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon3:c.T927C:p.T309T	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9978784	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	46020900	12A2p6	cell line	sgMsh2	46020900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	70	0	0	NA	exonic	Tdrd7	synonymous SNV	"Tdrd7:NM_001290475:exon13:c.A2325G:p.P775P,Tdrd7:NM_001355189:exon13:c.A2226G:p.P742P,Tdrd7:NM_146142:exon13:c.A2226G:p.P742P"	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9970698	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	46629947	12A2p6	cell line	sgMsh2	46629947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	65	0	0	NA	exonic	Tbc1d2	nonsynonymous SNV	Tbc1d2:NM_198664:exon4:c.T719C:p.V240A	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9956145	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	47279934	12A2p6	cell line	sgMsh2	47279934	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.175	30	0	0	NA	exonic	Col15a1	nonsynonymous SNV	Col15a1:NM_009928:exon16:c.A2158G:p.T720A	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.821851729	1	0.7111034	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	47405561	12A2p6	cell line	sgMsh2	47405561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	272	0	0	NA	exonic	Tgfbr1	nonsynonymous SNV	"Tgfbr1:NM_001312869:exon6:c.T914C:p.I305T,Tgfbr1:NM_001312868:exon7:c.T1151C:p.I384T,Tgfbr1:NM_009370:exon7:c.T1163C:p.I388T"	4qB1	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.643392496	2	0.9997676	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	52995837	12A2p6	cell line	sgMsh2	52995837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	162	0	0	NA	exonic	Nipsnap3a	nonsynonymous SNV	Nipsnap3a:NM_028529:exon3:c.C284T:p.A95V	4qB2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999983	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	89	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.784281364	1	0.7894289	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	176	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999994	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	57076378	12A2p6	cell line	sgMsh2	57076378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	111	0	0	NA	exonic	Epb41l4b	nonsynonymous SNV	"Epb41l4b:NM_001355492:exon11:c.A1082G:p.H361R,Epb41l4b:NM_019427:exon11:c.A1082G:p.H361R"	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998936	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	57103523	12A2p6	cell line	sgMsh2	57103523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	59	0	0	NA	exonic	Epb41l4b	synonymous SNV	"Epb41l4b:NM_001355492:exon2:c.T312C:p.H104H,Epb41l4b:NM_019427:exon2:c.T312C:p.H104H"	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9928923	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	336	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.638696201	2	0.999981	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	58053269	12A2p6	cell line	sgMsh2	58053269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon43:c.A10075G:p.I3359V	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.901688754	1	0.9991428	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	58088241	12A2p6	cell line	sgMsh2	58088241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	165	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon31:c.A5207G:p.N1736S	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999987	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	58100861	12A2p6	cell line	sgMsh2	58100861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	26	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon23:c.A3800T:p.E1267V	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.09373808	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	58146653	12A2p6	cell line	sgMsh2	58146653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon4:c.A988G:p.K330E	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	1	1	0.9995049	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	58486647	12A2p6	cell line	sgMsh2	58486647	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	143	0	0	NA	exonic	Lpar1	nonsynonymous SNV	"Lpar1:NM_001290486:exon2:c.T569C:p.V190A,Lpar1:NM_010336:exon3:c.T623C:p.V208A,Lpar1:NM_172989:exon3:c.T623C:p.V208A"	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.371007352	3	0.9838634	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	164	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.375703647	3	0.9892572	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	59737654	12A2p6	cell line	sgMsh2	59737654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	224	0	0	NA	exonic	E130308A19Rik	nonsynonymous SNV	E130308A19Rik:NM_001015681:exon3:c.A1264G:p.K422E	4qB3	chr4-3184901-60740166	3	2	1	0.93	4.367554902	NA	1	0.995614666	1	1.65E-08	CAA	nonsynonymous	CAC	8	CACCACCA	NA
M6_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	55	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9902016	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr4	63356984	12A2p6	cell line	sgMsh2	63356984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	227	0	0	NA	exonic	Orm3	nonsynonymous SNV	Orm3:NM_001379520:exon3:c.G331A:p.E111K	4qB3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	9.90E-09	TGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	168	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.845333207	1	0.9962368	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	68762239	12A2p6	cell line	sgMsh2	68762239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	139	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T2053G:p.F685V	4qC1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.999989	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	68762410	12A2p6	cell line	sgMsh2	68762410	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.139	127	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.C1882A:p.L628I	4qC1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.652785087	2	0.9689885	AGG	nonsynonymous	GGGT	8	GGGTGGGT	NA
M6_p20	chr4	70272739	12A2p6	cell line	sgMsh2	70272739	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	108	0	0	NA	exonic	Cdk5rap2	frameshift deletion	"Cdk5rap2:NM_001313762:exon20:c.2249delA:p.Q750Rfs*54,Cdk5rap2:NM_145990:exon23:c.3068delA:p.Q1023Rfs*54"	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	CTG	frameshift	NA	NA	NA	-1
M6_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	94	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.572948062	2	0.9832958	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr4	70433397	12A2p6	cell line	sgMsh2	70433397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	117	0	0	NA	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1486C:p.S496P	4qC2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999345	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	72851748	12A2p6	cell line	sgMsh2	72851748	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	216	0	0	NA	exonic	Aldoart1	synonymous SNV	Aldoart1:NM_001199270:exon1:c.C822T:p.D274D	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	2.27E-08	GGT	synonymous	NA	NA	NA	NA
M6_p20	chr4	74307008	12A2p6	cell line	sgMsh2	74307008	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	67	0	0	NA	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon5:c.G448A:p.A150T,Kdm4c:NM_001172095:exon6:c.G724A:p.A242T,Kdm4c:NM_144787:exon6:c.G673A:p.A225T"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.939259119	1	0.9866834	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	75957140	12A2p6	cell line	sgMsh2	75957140	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	181	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon23:c.3664delA:p.I1222fs*0,Ptprd:NM_001352629:exon24:c.3676delA:p.I1226fs*0,Ptprd:NM_001352630:exon24:c.3673delA:p.I1225fs*0,Ptprd:NM_001368993:exon24:c.3703delA:p.I1235fs*0,Ptprd:NM_001352628:exon25:c.3715delA:p.I1239fs*0,Ptprd:NM_001368991:exon34:c.3688delA:p.I1230fs*0,Ptprd:NM_011211:exon34:c.3691delA:p.I1231fs*0"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	ATT	nonsynonymous	NA	NA	NA	-1
M6_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	176	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.399185125	3	0.9659923	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	76133145	12A2p6	cell line	sgMsh2	76133145	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	421	0	0	NA	exonic	Ptprd	synonymous SNV	"Ptprd:NM_001368992:exon8:c.C870T:p.D290D,Ptprd:NM_001368993:exon8:c.C870T:p.D290D,Ptprd:NM_001352628:exon9:c.C882T:p.D294D,Ptprd:NM_001352629:exon9:c.C882T:p.D294D,Ptprd:NM_001352630:exon9:c.C882T:p.D294D,Ptprd:NM_001368991:exon19:c.C900T:p.D300D,Ptprd:NM_011211:exon19:c.C900T:p.D300D"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.525985106	2	0.9999858	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr4	76133175	12A2p6	cell line	sgMsh2	76133175	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	400	0	0	NA	exonic	Ptprd	synonymous SNV	"Ptprd:NM_001368992:exon8:c.G840T:p.P280P,Ptprd:NM_001368993:exon8:c.G840T:p.P280P,Ptprd:NM_001352628:exon9:c.G852T:p.P284P,Ptprd:NM_001352629:exon9:c.G852T:p.P284P,Ptprd:NM_001352630:exon9:c.G852T:p.P284P,Ptprd:NM_001368991:exon19:c.G870T:p.P290P,Ptprd:NM_011211:exon19:c.G870T:p.P290P"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.450844377	3	0.6637717	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr4	83681465	12A2p6	cell line	sgMsh2	83681465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	113	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon16:c.T743C:p.M248T,Ccdc171:NM_001355378:exon17:c.T2540C:p.M847T"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999095	ATG	nonsynonymous	AGGCAT	12	AGGCATAGGCAT	NA
M6_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	277	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.577644358	2	0.999997	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	84275845	12A2p6	cell line	sgMsh2	84275845	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	183	0	0	NA	exonic	Bnc2	nonsynonymous SNV	"Bnc2:NM_001369082:exon6:c.A3062C:p.N1021T,Bnc2:NM_172870:exon6:c.A3041C:p.N1014T,Bnc2:NM_001369081:exon7:c.A3263C:p.N1088T,Bnc2:NM_001369083:exon7:c.A3242C:p.N1081T,Bnc2:NM_001369084:exon7:c.A3008C:p.N1003T"	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	84971163	12A2p6	cell line	sgMsh2	84971163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	96	0	0	NA	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon6:c.A882G:p.K294K	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9996418	AAG	synonymous	AAAG	11	AAAGAAAGAAA	NA
M6_p20	chr4	85067548	12A2p6	cell line	sgMsh2	85067548	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	84	0	0	NA	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon17:c.C2835T:p.S945S	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.657481383	2	0.8899031	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr4	86445063	12A2p6	cell line	sgMsh2	86445063	G	-	Deletion	Mutect2;Vardict	2	0.162	56	0	0	NA	exonic	Saxo1	frameshift deletion	Saxo1:NM_001081096:exon4:c.1182delC:p.W395Gfs*9	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.760799886	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6_p20	chr4	88182594	12A2p6	cell line	sgMsh2	88182594	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	176	0	0	NA	exonic	Focad	nonsynonymous SNV	Focad:NM_001081184:exon9:c.T917A:p.V306D	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.361614761	3	0.9970898	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	88182599	12A2p6	cell line	sgMsh2	88182599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	177	0	0	NA	exonic	Focad	synonymous SNV	Focad:NM_001081184:exon9:c.T922C:p.L308L	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.361614761	3	0.9971951	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr4	88414292	12A2p6	cell line	sgMsh2	88414292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	29	0	0	NA	exonic	Hacd4	nonsynonymous SNV	"Hacd4:NM_001377100:exon6:c.T524G:p.V175G,Hacd4:NM_001377098:exon7:c.T671G:p.V224G,Hacd4:NM_001377099:exon7:c.T671G:p.V224G,Hacd4:NM_025760:exon7:c.T671G:p.V224G"	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9248375	AAC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr4	88880163	12A2p6	cell line	sgMsh2	88880163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	198	0	0	NA	exonic	Ifne	nonsynonymous SNV	Ifne:NM_177348:exon1:c.T17C:p.L6P	4qC4	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	90224531	12A2p6	cell line	sgMsh2	90224531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	221	0	0	NA	exonic	Zfp352	nonsynonymous SNV	Zfp352:NM_153102:exon2:c.T907A:p.C303S	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	1.55E-08	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	94569414	12A2p6	cell line	sgMsh2	94569414	T	-	Deletion	Mutect2;Vardict	2	0.101	106	0	0	NA	exonic	Plaa	frameshift deletion	Plaa:NM_172695:exon14:c.2318delA:p.K773Sfs*10	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.474325855	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr4	94599690	12A2p6	cell line	sgMsh2	94599690	T	C	SNV	Mutect2;Vardict	2	0.084	95	0	0	NA	exonic	Gm12657	synonymous SNV	Gm12657:NM_001081019:exon2:c.T306C:p.V102V	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.39448883	3	0.8408993	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	94849658	12A2p6	cell line	sgMsh2	94849658	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	209	0	0	NA	exonic	Tek	synonymous SNV	"Tek:NM_001290551:exon12:c.C1791T:p.N597N,Tek:NM_001290549:exon13:c.C1944T:p.N648N,Tek:NM_013690:exon13:c.C1944T:p.N648N"	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.39448883	3	0.9886792	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr4	95050417	12A2p6	cell line	sgMsh2	95050417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	35	0	0	NA	exonic	Jun	synonymous SNV	Jun:NM_010591:exon1:c.A855G:p.E285E	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9524188	TTT	synonymous	T	5	TTTTT	NA
M6_p20	chr4	96307431	12A2p6	cell line	sgMsh2	96307431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	239	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.A1027G:p.I343V	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	4.37E-09	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	96579407	12A2p6	cell line	sgMsh2	96579407	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	149	0	0	NA	exonic	Cyp2j9	nonsynonymous SNV	Cyp2j9:NM_028979:exon5:c.T841A:p.F281I	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.267688849	3	0.9999593	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	96584125	12A2p6	cell line	sgMsh2	96584125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	150	0	0	NA	exonic	Cyp2j9	synonymous SNV	Cyp2j9:NM_028979:exon3:c.A375G:p.G125G	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999955	ATC	synonymous	NA	NA	NA	NA
M6_p20	chr4	96723946	12A2p6	cell line	sgMsh2	96723946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	94	0	0	NA	exonic	Gm12695	nonsynonymous SNV	Gm12695:NM_001081284:exon12:c.T1579C:p.Y527H	4qC5	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9995789	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	98357954	12A2p6	cell line	sgMsh2	98357954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	178	0	0	NA	exonic	Tm2d1	nonsynonymous SNV	Tm2d1:NM_053157:exon6:c.A610G:p.T204A	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999995	GTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr4	98931511	12A2p6	cell line	sgMsh2	98931511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	195	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon5:c.A1047G:p.T349T,Usp1:NM_001301414:exon6:c.A1209G:p.T403T,Usp1:NM_146144:exon6:c.A1209G:p.T403T"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999999	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;MuSe;Vardict	3	0.086	240	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.403881421	3	0.9876728	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr4	98973478	12A2p6	cell line	sgMsh2	98973478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	92	0	0	NA	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_001369285:exon31:c.T3911C:p.V1304A,Dock7:NM_026082:exon31:c.T3911C:p.V1304A,Dock7:NM_001290636:exon32:c.T4001C:p.V1334A,Dock7:NM_001369286:exon32:c.T4001C:p.V1334A"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9995049	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	99221213	12A2p6	cell line	sgMsh2	99221213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	118	0	0	NA	exonic	Atg4c	nonsynonymous SNV	"Atg4c:NM_001145967:exon5:c.T416C:p.L139P,Atg4c:NM_175029:exon5:c.T416C:p.L139P"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.633999905	2	0.9796694	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	100441210	12A2p6	cell line	sgMsh2	100441210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	137	0	0	NA	exonic	Ror1	synonymous SNV	Ror1:NM_013845:exon9:c.A1779G:p.L593L	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.999987	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	100966265	12A2p6	cell line	sgMsh2	100966265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	209	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon10:c.T1513C:p.Y505H	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	3.92E-08	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	101137712	12A2p6	cell line	sgMsh2	101137712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	87	0	0	NA	exonic	Raver2	nonsynonymous SNV	Raver2:NM_183024:exon10:c.T1631C:p.V544A	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.67157027	2	0.8568712	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	101160041	12A2p6	cell line	sgMsh2	101160041	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	104	0	0	NA	exonic	Jak1	synonymous SNV	Jak1:NM_146145:exon17:c.C2391A:p.T797T	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998125	GGG	synonymous	GTCTT	10	GTCTTGTCTT	NA
M6_p20	chr4	101599194	12A2p6	cell line	sgMsh2	101599194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	180	0	0	NA	exonic	Dnajc6	nonsynonymous SNV	"Dnajc6:NM_001164583:exon4:c.T488C:p.V163A,Dnajc6:NM_001164584:exon4:c.T398C:p.V133A,Dnajc6:NM_001355179:exon4:c.T407C:p.V136A,Dnajc6:NM_001164585:exon5:c.T284C:p.V95A,Dnajc6:NM_001355180:exon5:c.T284C:p.V95A,Dnajc6:NM_198412:exon5:c.T284C:p.V95A"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.83124432	1	0.9943298	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	101967930	12A2p6	cell line	sgMsh2	101967930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	141	0	0	NA	exonic	Gm12790	nonsynonymous SNV	Gm12790:NM_001377350:exon3:c.A286G:p.K96E	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.90638505	1	0.9994009	TTA	nonsynonymous	ACTT	9	ACTTACTTA	NA
M6_p20	chr4	102605137	12A2p6	cell line	sgMsh2	102605137	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	80	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.A1493T:p.D498V,Pde4b:NM_001177981:exon10:c.A1310T:p.D437V,Pde4b:NM_001177982:exon10:c.A1253T:p.D418V,Pde4b:NM_001374780:exon15:c.A1778T:p.D593V,Pde4b:NM_019840:exon15:c.A1964T:p.D655V"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9986935	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	102605178	12A2p6	cell line	sgMsh2	102605178	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	63	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.C1534A:p.L512I,Pde4b:NM_001177981:exon10:c.C1351A:p.L451I,Pde4b:NM_001177982:exon10:c.C1294A:p.L432I,Pde4b:NM_001374780:exon15:c.C1819A:p.L607I,Pde4b:NM_019840:exon15:c.C2005A:p.L669I"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.742014704	1	0.5359957	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	103139430	12A2p6	cell line	sgMsh2	103139435	GAGGAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	92	0	0	NA	exonic	Mier1	nonframeshift deletion	"Mier1:NM_001039081:exon4:c.253_258del:p.E92_E93del,Mier1:NM_001286223:exon4:c.250_255del:p.E91_E92del,Mier1:NM_001286221:exon6:c.388_393del:p.E137_E138del,Mier1:NM_001286222:exon6:c.304_309del:p.E109_E110del,Mier1:NM_027696:exon6:c.304_309del:p.E109_E110del"	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	AGA	inframe	GAG	32	GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGA	-6
M6_p20	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	191	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.525985106	2	0.995638	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	105219449	12A2p6	cell line	sgMsh2	105219449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	122	0	0	NA	exonic	Plpp3	nonsynonymous SNV	Plpp3:NM_080555:exon5:c.A758G:p.H253R	4qC6	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.901688754	1	0.9980949	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	106359040	12A2p6	cell line	sgMsh2	106359040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	47	0	0	NA	exonic	Usp24	synonymous SNV	Usp24:NM_183225:exon10:c.T1084C:p.L362L	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.90638505	1	0.9297223	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr4	106407959	12A2p6	cell line	sgMsh2	106407959	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	194	0	0	NA	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon45:c.A5285T:p.E1762V	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.450844377	2	0.5040941	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	106753796	12A2p6	cell line	sgMsh2	106753796	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	85	0	0	NA	exonic	Acot11	nonsynonymous SNV	"Acot11:NM_001347159:exon12:c.T1217G:p.V406G,Acot11:NM_025590:exon12:c.T1157G:p.V386G"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.521288811	2	0.9306675	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.12	128	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.563555471	2	0.9957272	TAG	synonymous	GTA	8	GTAGTAGT	NA
M6_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	273	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.356918465	3	0.9999502	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	108642133	12A2p6	cell line	sgMsh2	108642133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	110	0	0	NA	exonic	Zfyve9	synonymous SNV	"Zfyve9:NM_183300:exon17:c.T1914C:p.D638D,Zfyve9:NM_001347163:exon18:c.T3987C:p.D1329D,Zfyve9:NM_001384118:exon18:c.T3987C:p.D1329D"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.807762842	1	0.9174331	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr4	108890458	12A2p6	cell line	sgMsh2	108890458	T	-	Deletion	Mutect2;Vardict	2	0.117	144	0	0	NA	exonic	Rab3b	frameshift deletion	Rab3b:NM_023537:exon2:c.151delT:p.F51Lfs*10	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.549466584	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	227	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.460236968	2	0.6698915	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	109083130	12A2p6	cell line	sgMsh2	109083130	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	184	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon8:c.T567A:p.D189E,Osbpl9:NM_001355191:exon9:c.T363A:p.D121E,Osbpl9:NM_173350:exon9:c.T606A:p.D202E,Osbpl9:NM_001355190:exon10:c.T363A:p.D121E,Osbpl9:NM_133885:exon11:c.T858A:p.D286E,Osbpl9:NM_001346502:exon12:c.T927A:p.D309E,Osbpl9:NM_001368727:exon12:c.T897A:p.D299E"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	134	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.432059195	3	7.69E-07	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	109925893	12A2p6	cell line	sgMsh2	109925893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	213	0	0	NA	exonic	Faf1	synonymous SNV	Faf1:NM_007983:exon17:c.T1581C:p.A527A	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	2.87E-08	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr4	110213217	12A2p6	cell line	sgMsh2	110213217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	154	0	0	NA	exonic	Elavl4	nonsynonymous SNV	"Elavl4:NM_001038698:exon4:c.C419T:p.P140L,Elavl4:NM_001163397:exon4:c.C428T:p.P143L,Elavl4:NM_001163399:exon4:c.C434T:p.P145L,Elavl4:NM_001347178:exon4:c.C419T:p.P140L,Elavl4:NM_010488:exon4:c.C434T:p.P145L,Elavl4:NM_001357190:exon5:c.C413T:p.P138L"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999967	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	110580106	12A2p6	cell line	sgMsh2	110580106	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	91	0	0	NA	exonic	Agbl4	synonymous SNV	"Agbl4:NM_001048189:exon3:c.G213A:p.R71R,Agbl4:NM_001284190:exon3:c.G213A:p.R71R,Agbl4:NM_030231:exon3:c.G213A:p.R71R"	4qC7	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9994632	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr4	112125158	12A2p6	cell line	sgMsh2	112125158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	255	0	0	NA	exonic	Skint4	nonsynonymous SNV	"Skint4:NM_001357339:exon6:c.T847A:p.S283T,Skint4:NM_178786:exon6:c.T847A:p.S283T,Skint4:NM_001347180:exon7:c.T823A:p.S275T"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.882903572	1	0.9999888	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	113238336	12A2p6	cell line	sgMsh2	113238336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	232	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon3:c.G125A:p.G42D	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	6.94E-09	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	115016199	12A2p6	cell line	sgMsh2	115016199	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.104	71	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon9:c.A340T:p.I114F,Stil:NM_001304555:exon10:c.A1018T:p.I340F,Stil:NM_001304559:exon10:c.A1018T:p.I340F,Stil:NM_009185:exon10:c.A1018T:p.I340F"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.488414742	2	0.8053674	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	115016252	12A2p6	cell line	sgMsh2	115016252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	58	0	0	NA	exonic	Stil	synonymous SNV	"Stil:NM_001304551:exon9:c.T393G:p.V131V,Stil:NM_001304555:exon10:c.T1071G:p.V357V,Stil:NM_001304559:exon10:c.T1071G:p.V357V,Stil:NM_009185:exon10:c.T1071G:p.V357V"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9922977	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	109	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.558859176	2	0.9892354	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Strelka2;Vardict	2	0.2381	21	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6_p20	chr4	115432495	12A2p6	cell line	sgMsh2	115432495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	348	0	0	NA	exonic	Cyp4a12b	synonymous SNV	Cyp4a12b:NM_172306:exon5:c.C558T:p.H186H	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.845333207	1	0.9999886	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	265	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.516592515	2	0.9982343	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	116163736	12A2p6	cell line	sgMsh2	116163736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	340	0	0	NA	exonic	Tspan1	synonymous SNV	Tspan1:NM_133681:exon6:c.A483G:p.S161S	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	116581342	12A2p6	cell line	sgMsh2	116581342	A	G	SNV	Mutect2;Vardict	2	0.048	103	0	0	NA	exonic	Gpbp1l1	nonsynonymous SNV	"Gpbp1l1:NM_001368177:exon7:c.A634G:p.T212A,Gpbp1l1:NM_029868:exon7:c.A634G:p.T212A"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.225422188	3	0.9997795	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	116704648	12A2p6	cell line	sgMsh2	116704648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	109	0	0	NA	exonic	Mmachc	synonymous SNV	Mmachc:NM_025962:exon3:c.A288G:p.E96E	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998749	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr4	117109866	12A2p6	cell line	sgMsh2	117109866	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.181	27	0	0	NA	exonic	Ptch2	synonymous SNV	"Ptch2:NM_001312903:exon14:c.A873G:p.V291V,Ptch2:NM_008958:exon14:c.A1839G:p.V613V"	4qD1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.850029502	1	0.7435931	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	117760430	12A2p6	cell line	sgMsh2	117760430	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	99	0	0	NA	exonic	Klf17	nonsynonymous SNV	Klf17:NM_029416:exon2:c.A729T:p.R243S	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.999719	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	117864847	12A2p6	cell line	sgMsh2	117864847	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.103	77	0	0	NA	exonic	Slc6a9	nonsynonymous SNV	"Slc6a9:NM_001355175:exon9:c.G1351A:p.A451T,Slc6a9:NM_001369017:exon9:c.G1099A:p.A367T,Slc6a9:NM_001369016:exon10:c.G1294A:p.A432T,Slc6a9:NM_008135:exon10:c.G1294A:p.A432T"	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.483718446	2	0.7952138	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	118366133	12A2p6	cell line	sgMsh2	118366133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	82	0	0	NA	exonic	Szt2	synonymous SNV	Szt2:NM_198170:exon66:c.A9252C:p.G3084G	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9988885	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9401058	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M6_p20	chr4	118709712	12A2p6	cell line	sgMsh2	118709712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	162	0	0	NA	exonic	Olfr1341	nonsynonymous SNV	Olfr1341:NM_146853:exon1:c.T304C:p.Y102H	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.821851729	1	0.9850416	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	118829749	12A2p6	cell line	sgMsh2	118829749	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.274	270	0	0	NA	exonic	Olfr1333	synonymous SNV	Olfr1333:NM_207157:exon1:c.G690A:p.K230K	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	1.27E-09	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr4	118829751	12A2p6	cell line	sgMsh2	118829751	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.274	270	0	0	NA	exonic	Olfr1333	stopgain	Olfr1333:NM_207157:exon1:c.A688T:p.K230X	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	1.27E-09	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	147	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.544770289	2	0.9952681	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	44	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.779585069	1	0.000862675	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	120162006	12A2p6	cell line	sgMsh2	120162006	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	80	0	0	NA	exonic	Edn2	nonsynonymous SNV	Edn2:NM_007902:exon2:c.T191G:p.I64S	4qD2.1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9986935	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	120535475	12A2p6	cell line	sgMsh2	120535475	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	123	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon3:c.G966T:p.K322N	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999597	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	120715830	12A2p6	cell line	sgMsh2	120715830	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	98	0	0	NA	exonic	Kcnq4	nonsynonymous SNV	Kcnq4:NM_001081142:exon5:c.A773G:p.Y258C	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.399185125	3	0.8271322	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.112	63	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.525985106	2	0.09468425	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	121082857	12A2p6	cell line	sgMsh2	121082857	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	52	0	0	NA	exonic	Zmpste24	frameshift deletion	Zmpste24:NM_172700:exon5:c.591delT:p.F197Lfs*8	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	327	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.591733245	2	0.9999998	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr4	123117040	12A2p6	cell line	sgMsh2	123117040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	202	0	0	NA	exonic	Oxct2b	nonsynonymous SNV	Oxct2b:NM_181859:exon1:c.T752C:p.V251A	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.807762842	1	0.9864076	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	123376393	12A2p6	cell line	sgMsh2	123376393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	112	0	0	NA	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon78:c.T13883C:p.M4628T,Macf1:NM_001199136:exon83:c.T19964C:p.M6655T"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.953348005	1	0.9994915	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	162	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.540073993	2	0.9961591	CAG	synonymous	GT	8	GTGTGTGT	NA
M6_p20	chr4	123408505	12A2p6	cell line	sgMsh2	123408505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	89	0	0	NA	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A2203G:p.T735A	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.90638505	1	0.9913691	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	123409107	12A2p6	cell line	sgMsh2	123409107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	107	0	0	NA	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A1601G:p.Y534C	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998529	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	152	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.55416288	2	0.99756	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	123474499	12A2p6	cell line	sgMsh2	123474499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	191	0	0	NA	exonic	Macf1	synonymous SNV	Macf1:NM_001199136:exon36:c.A6468G:p.K2156K	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.995614666	1	0.9999998	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr4	123474578	12A2p6	cell line	sgMsh2	123474578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	113	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A6389G:p.E2130G	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999095	TTC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M6_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	119	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999443	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	124838723	12A2p6	cell line	sgMsh2	124838723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	107	0	0	NA	exonic	Mtf1	nonsynonymous SNV	Mtf1:NM_008636:exon9:c.A1573G:p.T525A	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.817155433	1	0.9348241	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	271	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.427362899	3	0.9334097	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	64	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.572948062	2	0.9331023	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	125120409	12A2p6	cell line	sgMsh2	125120409	A	-	Deletion	Mutect2;Vardict	2	0.096	95	0	0	NA	exonic	Zc3h12a	stopgain	Zc3h12a:NM_153159:exon5:c.842delT:p.L281fs*0	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.450844377	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M6_p20	chr4	125641560	12A2p6	cell line	sgMsh2	125641560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	113	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon5:c.T749C:p.M250T	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.995614666	1	0.9998942	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	126526090	12A2p6	cell line	sgMsh2	126526090	T	C	SNV	Mutect2;Vardict	2	0.041	104	0	0	NA	exonic	Ago4	synonymous SNV	Ago4:NM_153177:exon2:c.A93G:p.L31L	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.192548119	3	0.9999443	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr4	126757006	12A2p6	cell line	sgMsh2	126757006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	69	0	0	NA	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon2:c.T80C:p.L27P,AU040320:NM_001035526:exon2:c.T80C:p.L27P,AU040320:NM_133886:exon2:c.T80C:p.L27P"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9968235	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	127355639	12A2p6	cell line	sgMsh2	127355639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	75	0	0	NA	exonic	Gjb5	synonymous SNV	Gjb5:NM_010291:exon2:c.A711G:p.K237K	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9980431	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	125	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999657	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	128549242	12A2p6	cell line	sgMsh2	128549242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	52	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon62:c.A9785G:p.Q3262R	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9875423	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	73	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	2	1	1	0.9977	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr4	129182365	12A2p6	cell line	sgMsh2	129182365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	202	0	0	NA	exonic	S100pbp	nonsynonymous SNV	"S100pbp:NM_001379589:exon2:c.G166A:p.E56K,S100pbp:NM_001379591:exon2:c.G166A:p.E56K,S100pbp:NM_001379593:exon2:c.G166A:p.E56K,S100pbp:NM_001379597:exon2:c.G166A:p.E56K,S100pbp:NM_001347203:exon3:c.G166A:p.E56K,S100pbp:NM_001361317:exon3:c.G166A:p.E56K,S100pbp:NM_001379588:exon3:c.G166A:p.E56K,S100pbp:NM_001379590:exon3:c.G166A:p.E56K,S100pbp:NM_001379592:exon3:c.G166A:p.E56K,S100pbp:NM_001379594:exon3:c.G166A:p.E56K,S100pbp:NM_001379595:exon3:c.G166A:p.E56K,S100pbp:NM_001379596:exon3:c.G166A:p.E56K,S100pbp:NM_001379598:exon3:c.G166A:p.E56K,S100pbp:NM_001379599:exon3:c.G166A:p.E56K,S100pbp:NM_029036:exon3:c.G166A:p.E56K"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999999	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	129306630	12A2p6	cell line	sgMsh2	129306630	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	96	0	0	NA	exonic	Sync	nonsynonymous SNV	Sync:NM_023485:exon4:c.C1328A:p.A443D	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.718533226	2	0.6399357	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	91	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.549466584	2	0.9725223	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	129607148	12A2p6	cell line	sgMsh2	129607148	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	261	0	0	NA	exonic	Tmem234	synonymous SNV	"Tmem234:NM_001368255:exon4:c.G297A:p.G99G,Tmem234:NM_001368256:exon4:c.G297A:p.G99G,Tmem234:NM_001368257:exon4:c.G270A:p.G90G,Tmem234:NM_029748:exon4:c.G297A:p.G99G,Tmem234:NM_001368258:exon5:c.G180A:p.G60G,Tmem234:NM_001368259:exon5:c.G180A:p.G60G,Tmem234:NM_001368260:exon5:c.G141A:p.G47G"	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.760799886	1	0.8358979	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr4	130068520	12A2p6	cell line	sgMsh2	130068520	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	63	0	0	NA	exonic	Col16a1	nonsynonymous SNV	Col16a1:NM_028266:exon37:c.G2480A:p.G827E	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.666873974	2	0.7911004	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	130314024	12A2p6	cell line	sgMsh2	130314024	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	231	0	0	NA	exonic	Fabp3	nonsynonymous SNV	Fabp3:NM_010174:exon3:c.C317T:p.T106I	4qD2.2	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	7.44E-09	ACT	nonsynonymous	ACTA	8	ACTAACTA	NA
M6_p20	chr4	131819618	12A2p6	cell line	sgMsh2	131819618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	33	0	0	NA	exonic	Ptpru	nonsynonymous SNV	"Ptpru:NM_001083119:exon6:c.T761C:p.V254A,Ptpru:NM_011214:exon6:c.T761C:p.V254A"	4qD2.3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9445113	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	133061867	12A2p6	cell line	sgMsh2	133061867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	45	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A418G:p.S140G	4qD2.3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9782528	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	25	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.784281364	1	0.009064292	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	148	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.652785087	2	0.9826964	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	42	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.972133188	1	0.9606381	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	134913128	12A2p6	cell line	sgMsh2	134913128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	166	0	0	NA	exonic	Tmem50a	nonsynonymous SNV	Tmem50a:NM_027935:exon2:c.A56G:p.K19R	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999988	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	135324842	12A2p6	cell line	sgMsh2	135324842	G	A	SNV	Mutect2;Strelka2	2	0.125	45	0	0	NA	exonic	Srrm1	synonymous SNV	"Srrm1:NM_001369070:exon14:c.C2193T:p.T731T,Srrm1:NM_001369071:exon14:c.C2190T:p.T730T,Srrm1:NM_001369073:exon14:c.C2103T:p.T701T,Srrm1:NM_001130477:exon15:c.C2220T:p.T740T,Srrm1:NM_001369067:exon15:c.C2232T:p.T744T,Srrm1:NM_001369068:exon15:c.C2229T:p.T743T,Srrm1:NM_001369069:exon15:c.C2196T:p.T732T,Srrm1:NM_001369072:exon15:c.C2145T:p.T715T,Srrm1:NM_016799:exon15:c.C2235T:p.T745T,Srrm1:NM_001369074:exon16:c.C1896T:p.T632T"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.587036949	2	0.8414659	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr4	135416591	12A2p6	cell line	sgMsh2	135416591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	123	0	0	NA	exonic	Rcan3	synonymous SNV	Rcan3:NM_022980:exon5:c.A549G:p.K183K	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999597	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr4	135872245	12A2p6	cell line	sgMsh2	135872245	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	165	0	0	NA	exonic	Pnrc2	synonymous SNV	Pnrc2:NM_026383:exon3:c.A192T:p.G64G	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.807762842	1	0.9715251	TTC	synonymous	C	5	CCCCC	NA
M6_p20	chr4	135960883	12A2p6	cell line	sgMsh2	135960883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	89	0	0	NA	exonic	Hmgcl	nonsynonymous SNV	"Hmgcl:NM_001357529:exon8:c.T776C:p.M259T,Hmgcl:NM_008254:exon8:c.T851C:p.M284T,Hmgcl:NM_001357530:exon9:c.T644C:p.M215T"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.779585069	1	0.766716	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	133	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.338133283	3	0.9956029	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	136951779	12A2p6	cell line	sgMsh2	136951779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	180	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon2:c.T142C:p.Y48H	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999996	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	136995549	12A2p6	cell line	sgMsh2	136995549	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.16	44	0	0	NA	exonic	Zbtb40	synonymous SNV	Zbtb40:NM_198248:exon12:c.G2217A:p.P739P	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.751407295	1	0.5687578	CCG	synonymous	NA	NA	NA	NA
M6_p20	chr4	137423336	12A2p6	cell line	sgMsh2	137423336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	84	0	0	NA	exonic	Cela3b	nonsynonymous SNV	Cela3b:NM_026419:exon6:c.T550C:p.Y184H	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9990545	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	137559090	12A2p6	cell line	sgMsh2	137559090	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	56	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon79:c.G10819A:p.V3607M	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9909565	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	137610706	12A2p6	cell line	sgMsh2	137610706	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.189	53	0	0	NA	exonic	Usp48	nonsynonymous SNV	"Usp48:NM_001347227:exon7:c.G791A:p.G264E,Usp48:NM_001355588:exon7:c.G791A:p.G264E,Usp48:NM_130879:exon7:c.G791A:p.G264E"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.887599867	1	0.9294137	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	108	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.413274012	3	0.7722051	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	138103404	12A2p6	cell line	sgMsh2	138103404	A	-	Deletion	Mutect2;Vardict	2	0.092	150	0	0	NA	exonic	Eif4g3	frameshift deletion	"Eif4g3:NM_001369130:exon6:c.529delA:p.T179Lfs*1,Eif4g3:NM_001355699:exon7:c.562delA:p.T190Lfs*1,Eif4g3:NM_001369131:exon8:c.529delA:p.T179Lfs*1,Eif4g3:NM_001256195:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_001256198:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_172703:exon9:c.469delA:p.T159Lfs*1"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.432059195	NA	NA	GAA	frameshift	AG	9	AGAGAGAGA	-1
M6_p20	chr4	138288156	12A2p6	cell line	sgMsh2	138288156	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	38	0	0	NA	exonic	Kif17	nonsynonymous SNV	Kif17:NM_010623:exon8:c.T1615G:p.S539A	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9622963	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	138291492	12A2p6	cell line	sgMsh2	138291492	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	25	0	0	NA	exonic	Kif17	frameshift deletion	"Kif17:NM_001190978:exon8:c.1441delC:p.L482Cfs*4,Kif17:NM_010623:exon10:c.2152delC:p.L719Cfs*4"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	53	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M6_p20	chr4	139349016	12A2p6	cell line	sgMsh2	139349016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	110	0	0	NA	exonic	Mrto4	nonsynonymous SNV	"Mrto4:NM_001290810:exon4:c.A263G:p.N88S,Mrto4:NM_001356476:exon4:c.A122G:p.N41S,Mrto4:NM_023536:exon4:c.A263G:p.N88S"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9998846	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	139410659	12A2p6	cell line	sgMsh2	139410659	T	C	SNV	Mutect2;Vardict	2	0.121	47	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon25:c.T3326C:p.L1109P	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.568251767	2	0.8593629	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	139463368	12A2p6	cell line	sgMsh2	139463368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	72	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon82:c.A12185G:p.K4062R	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9975066	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	80	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.455540673	2	0.632245	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	105	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.83124432	1	0.9561617	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	140028713	12A2p6	cell line	sgMsh2	140028713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	74	0	0	NA	exonic	Igsf21	synonymous SNV	Igsf21:NM_198610:exon7:c.A1086G:p.L362L	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.638696201	2	0.09366359	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr4	140710387	12A2p6	cell line	sgMsh2	140710387	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	99	0	0	NA	exonic	Rcc2	nonsynonymous SNV	Rcc2:NM_173867:exon4:c.T428G:p.L143R	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.798370251	1	0.8688429	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	140737313	12A2p6	cell line	sgMsh2	140737313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	120	0	0	NA	exonic	Padi6	nonsynonymous SNV	Padi6:NM_153106:exon6:c.T604C:p.S202P	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999486	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	141247451	12A2p6	cell line	sgMsh2	141247451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	40	0	0	NA	exonic	Arhgef19	synonymous SNV	"Arhgef19:NM_001379652:exon4:c.T762C:p.D254D,Arhgef19:NM_172520:exon5:c.T762C:p.D254D,Arhgef19:NM_001379647:exon6:c.T762C:p.D254D"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.962740597	1	0.9494086	ATC	synonymous	NA	NA	NA	NA
M6_p20	chr4	141247457	12A2p6	cell line	sgMsh2	141247457	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.208	40	0	0	NA	exonic	Arhgef19	nonsynonymous SNV	"Arhgef19:NM_001379652:exon4:c.C768A:p.N256K,Arhgef19:NM_172520:exon5:c.C768A:p.N256K,Arhgef19:NM_001379647:exon6:c.C768A:p.N256K"	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.976829483	1	0.9572861	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	141379731	12A2p6	cell line	sgMsh2	141379731	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.132	51	0	0	NA	exonic	Fam131c	synonymous SNV	Fam131c:NM_001085513:exon2:c.C76T:p.L26L	4qD3	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.619911018	2	0.8425763	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr4	141628313	12A2p6	cell line	sgMsh2	141628313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	87	0	0	NA	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon16:c.A2575T:p.M859L,Plekhm2:NM_001033150:exon17:c.A2635T:p.M879L"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.812459138	1	0.8877026	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	141629940	12A2p6	cell line	sgMsh2	141629940	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	39	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001347237:exon13:c.G2160A:p.A720A,Plekhm2:NM_001033150:exon14:c.G2220A:p.A740A"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.901688754	1	0.8921145	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr4	141776940	12A2p6	cell line	sgMsh2	141776940	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	24	0	0	NA	exonic	Dnajc16	synonymous SNV	Dnajc16:NM_172338:exon5:c.A708T:p.L236L	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.8911772	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr4	143135359	12A2p6	cell line	sgMsh2	143135359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	177	0	0	NA	exonic	Prdm2	nonsynonymous SNV	"Prdm2:NM_001081355:exon8:c.T1360C:p.S454P,Prdm2:NM_001256380:exon8:c.T1360C:p.S454P"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.71383693	2	0.8116539	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	143180932	12A2p6	cell line	sgMsh2	143180932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	105	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon3:c.A69G:p.R23R,Prdm2:NM_001256380:exon3:c.A69G:p.R23R"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.859422094	1	0.9822619	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr4	143654600	12A2p6	cell line	sgMsh2	143654600	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	92	0	0	NA	exonic	Pramel22	synonymous SNV	Pramel22:NM_001126325:exon4:c.T852C:p.S284S	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.765496182	1	0.6934389	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	143726070	12A2p6	cell line	sgMsh2	143726070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	111	0	0	NA	exonic	Pramel24	nonsynonymous SNV	Pramel24:NM_001085412:exon2:c.A70G:p.T24A	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	2	1	1	0.9998936	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	151	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.859422094	1	0.9966678	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr4	143897144	12A2p6	cell line	sgMsh2	143897144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	374	0	0	NA	exonic	Pramel11	synonymous SNV	Pramel11:NM_001085414:exon3:c.T459C:p.L153L	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.737318408	2	0.6233592	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr4	143949937	12A2p6	cell line	sgMsh2	143949937	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.21	297	0	0	NA	exonic	Pramel16	nonsynonymous SNV	Pramel16:NM_001126315:exon2:c.T596A:p.I199N	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.986222075	1	1.11E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Vardict	2	0.055	532	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.258296258	3	1	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	143993405	12A2p6	cell line	sgMsh2	143993405	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	197	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon2:c.C389A:p.P130H	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	144159644	12A2p6	cell line	sgMsh2	144159644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	214	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.A383G:p.Q128R	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	2.65E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	144363539	12A2p6	cell line	sgMsh2	144363539	T	G	SNV	Mutect2;Vardict	2	0.04	296	0	0	NA	exonic	Pramel31	nonsynonymous SNV	Pramel31:NM_001034101:exon4:c.T1148G:p.L383R	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.187851824	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	144418410	12A2p6	cell line	sgMsh2	144418410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	50	0	0	NA	exonic	1700012P22Rik	synonymous SNV	1700012P22Rik:NM_027056:exon4:c.C585T:p.R195R	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9853852	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr4	144555570	12A2p6	cell line	sgMsh2	144555570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	127	0	0	NA	exonic	Aadacl4fm2	synonymous SNV	Aadacl4fm2:NM_001085542:exon4:c.A651G:p.Q217Q	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.591733245	2	0.9963039	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr4	144715455	12A2p6	cell line	sgMsh2	144715455	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	32	0	0	NA	exonic	AAdacl4fm3	frameshift deletion	AAdacl4fm3:NM_001085536:exon2:c.225delT:p.Q76Kfs*2	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr4	144786389	12A2p6	cell line	sgMsh2	144786389	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	84	0	0	NA	exonic	Aadacl4fm5	nonsynonymous SNV	Aadacl4fm5:NM_001126316:exon1:c.C139G:p.H47D	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	0.812459138	1	0.8809916	TGC	nonsynonymous	ATGCA	11	ATGCAATGCAA	NA
M6_p20	chr4	145065883	12A2p6	cell line	sgMsh2	145065883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	71	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon57:c.T11276C:p.V3759A,Vps13d:NM_001276465:exon58:c.T11273C:p.V3758A"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.997297	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	145110843	12A2p6	cell line	sgMsh2	145110843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	59	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon35:c.T8189C:p.L2730P,Vps13d:NM_001276465:exon36:c.T8189C:p.L2730P"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9928923	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	145156208	12A2p6	cell line	sgMsh2	145156208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	76	0	0	NA	exonic	Vps13d	synonymous SNV	"Vps13d:NM_001276502:exon18:c.T2814C:p.S938S,Vps13d:NM_001276465:exon19:c.T2814C:p.S938S"	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9981949	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr4	145293180	12A2p6	cell line	sgMsh2	145293180	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	74	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon5:c.A422T:p.K141M	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9978784	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	145296939	12A2p6	cell line	sgMsh2	145296939	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	53	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon4:c.A323G:p.Q108R	4qE1	chr4-61672369-145315362	3	2	1	0.93	4.367554902	NA	1	1	1	0.9884997	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	145536879	12A2p6	cell line	sgMsh2	145536879	T	C	SNV	Mutect2;Vardict	2	0.059	369	0	0	NA	exonic	Zfp990	nonsynonymous SNV	Zfp990:NM_001324553:exon4:c.T446C:p.I149T	4qE1	chr4-145467622-145701461	9.82783125	7.82783125	2	0.93	4.367554902	NA	1	0.27708144	3	1.02E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	147510755	12A2p6	cell line	sgMsh2	147510755	T	G	SNV	Mutect2;Vardict	2	0.058	944	0	0	NA	exonic	Zfp982	synonymous SNV	"Zfp982:NM_001039209:exon2:c.T33G:p.G11G,Zfp982:NM_001365422:exon3:c.T33G:p.G11G,Zfp982:NM_001371349:exon3:c.T33G:p.G11G,Zfp982:NM_001371348:exon4:c.T33G:p.G11G"	4qE1	chr4-145892162-147676356	5.20034682	3.20034682	2	0.93	4.367554902	NA	1	0.272385144	3	1	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr4	148013719	12A2p6	cell line	sgMsh2	148013719	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	84	0	0	NA	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon17:c.G1753T:p.G585C	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.695051748	2	0.7508194	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	148016905	12A2p6	cell line	sgMsh2	148016905	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	251	0	0	NA	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon13:c.T1195A:p.C399S	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.94865171	1	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	148500097	12A2p6	cell line	sgMsh2	148500097	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	49	0	0	NA	exonic	Angptl7	nonsynonymous SNV	Angptl7:NM_001039554:exon1:c.T193G:p.W65G	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.71383693	2	0.5693991	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	149237413	12A2p6	cell line	sgMsh2	149237413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	exonic	Kif1b	synonymous SNV	Kif1b:NM_008441:exon21:c.A3048G:p.V1016V	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.83124432	1	0.984304	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr4	150866443	12A2p6	cell line	sgMsh2	150866443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	173	0	0	NA	exonic	Errfi1	synonymous SNV	"Errfi1:NM_001356323:exon4:c.A327G:p.Q109Q,Errfi1:NM_133753:exon4:c.A327G:p.Q109Q"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.859422094	1	0.9985099	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	35	0	0	NA	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416T:p.Y139F	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9524188	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	150929934	12A2p6	cell line	sgMsh2	150929934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	186	0	0	NA	exonic	Tnfrsf9	nonsynonymous SNV	"Tnfrsf9:NM_001077508:exon2:c.A89G:p.N30S,Tnfrsf9:NM_001077509:exon2:c.A89G:p.N30S,Tnfrsf9:NM_011612:exon2:c.A89G:p.N30S"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.493111037	2	0.952749	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	151078848	12A2p6	cell line	sgMsh2	151078848	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.115	63	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon18:c.C4556T:p.S1519F	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.540073993	2	0.9114959	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	151083836	12A2p6	cell line	sgMsh2	151083836	C	A	SNV	Mutect2;Vardict	2	0.062	71	0	0	NA	exonic	Camta1	synonymous SNV	Camta1:NM_001081557:exon16:c.G4029T:p.G1343G	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.291170327	3	0.9788934	TCC	synonymous	NA	NA	NA	NA
M6_p20	chr4	151145372	12A2p6	cell line	sgMsh2	151145372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	85	0	0	NA	exonic	Camta1	synonymous SNV	Camta1:NM_001081557:exon9:c.A1002G:p.A334A	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9991279	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr4	152108328	12A2p6	cell line	sgMsh2	152108328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	151	0	0	NA	exonic	Plekhg5	nonsynonymous SNV	"Plekhg5:NM_001285999:exon14:c.A1750G:p.M584V,Plekhg5:NM_001374783:exon15:c.A1711G:p.M571V"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9999958	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	152138902	12A2p6	cell line	sgMsh2	152138902	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.333	13	0	0	NA	exonic	Espn	nonsynonymous SNV	Espn:NM_207687:exon4:c.T692G:p.V231G	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.008222426	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	152312198	12A2p6	cell line	sgMsh2	152312198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	74	0	0	NA	exonic	Rnf207	nonsynonymous SNV	Rnf207:NM_001033489:exon13:c.T1355C:p.L452P	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.784281364	1	0.755172	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	152377002	12A2p6	cell line	sgMsh2	152377002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	83	0	0	NA	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_029216:exon24:c.T3659A:p.I1220N,Chd5:NM_001081376:exon25:c.T3770A:p.I1257N,Chd5:NM_001369243:exon25:c.T3770A:p.I1257N"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9989749	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	154033286	12A2p6	cell line	sgMsh2	154033286	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	84	0	0	NA	exonic	Ccdc27	frameshift deletion	Ccdc27:NM_001033455:exon9:c.1465delC:p.L489Wfs*9	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.840636911	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6_p20	chr4	154258124	12A2p6	cell line	sgMsh2	154258124	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	45	0	0	NA	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon15:c.A1819C:p.K607Q	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.624607314	2	0.7990782	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	154291064	12A2p6	cell line	sgMsh2	154291064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	33	0	0	NA	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.T472C:p.Y158H	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9445113	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	45	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.742014704	1	0.5364668	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	103	0	0	NA	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.582340654	2	0.9892776	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	147	0	0	NA	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.709140635	2	0.8026226	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	155747419	12A2p6	cell line	sgMsh2	155747419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	85	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon14:c.T1397C:p.I466T	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.737318408	1	0.5030807	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	155842017	12A2p6	cell line	sgMsh2	155842017	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	125	0	0	NA	exonic	Mxra8	stopgain	Mxra8:NM_024263:exon5:c.C831A:p.Y277X	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.455540673	2	8.84E-06	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	174	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.291170327	3	0.9999689	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	156177081	12A2p6	cell line	sgMsh2	156177081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	126	0	0	NA	exonic	Agrn	nonsynonymous SNV	"Agrn:NM_001369026:exon8:c.A1358G:p.E453G,Agrn:NM_021604:exon9:c.A1679G:p.E560G"	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	0.939259119	1	0.9996482	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	156217413	12A2p6	cell line	sgMsh2	156217413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	33	0	0	NA	exonic	Perm1	nonsynonymous SNV	Perm1:NM_172417:exon2:c.T413C:p.M138T	4qE2	chr4-147681972-156223608	3	2	1	0.93	4.367554902	NA	1	1	1	0.9445113	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr4	156233654	12A2p6	cell line	sgMsh2	156233654	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	145	0	0	NA	exonic	Klhl17	nonsynonymous SNV	Klhl17:NM_198305:exon3:c.T421G:p.L141V	4qE2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	202	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9987389	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	3693883	12A2p6	cell line	sgMsh2	3693883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001289528:exon18:c.C1584T:p.G528G,Ankib1:NM_001003909:exon19:c.C2406T:p.G802G,Ankib1:NM_001289527:exon19:c.C2424T:p.G808G,Ankib1:NM_001289529:exon19:c.C951T:p.G317G"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.9990545	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	159	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9712727	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	162	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	0.964885	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	3772546	12A2p6	cell line	sgMsh2	3772546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	218	0	0	NA	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001003909:exon2:c.T159C:p.A53A,Ankib1:NM_001289527:exon2:c.T159C:p.A53A"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.9132577	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	3818616	12A2p6	cell line	sgMsh2	3818616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	108	0	0	NA	exonic	Krit1	nonsynonymous SNV	"Krit1:NM_001170552:exon9:c.A1079G:p.H360R,Krit1:NM_030675:exon9:c.A1079G:p.H360R"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998644	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	93	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.9995434	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	6770788	12A2p6	cell line	sgMsh2	6770788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	276	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.C2274T:p.C758C	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.8487967	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr5	6771852	12A2p6	cell line	sgMsh2	6771852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	477	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A1210C:p.R404R	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	1.08E-09	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr5	7975687	12A2p6	cell line	sgMsh2	7975687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	219	0	0	NA	exonic	Steap4	nonsynonymous SNV	Steap4:NM_054098:exon2:c.A247G:p.R83G	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.9162118	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	8579047	12A2p6	cell line	sgMsh2	8579047	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	97	0	0	NA	exonic	Rundc3b	nonsynonymous SNV	"Rundc3b:NM_001347311:exon3:c.A353C:p.N118T,Rundc3b:NM_001359961:exon3:c.A353C:p.N118T,Rundc3b:NM_198620:exon3:c.A353C:p.N118T"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9629618	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	8955418	12A2p6	cell line	sgMsh2	8955418	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	160	0	0	NA	exonic	Abcb4	synonymous SNV	Abcb4:NM_008830:exon26:c.C3300T:p.L1100L	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.999998	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr5	8958457	12A2p6	cell line	sgMsh2	8958457	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	102	0	0	NA	exonic	Abcb4	nonsynonymous SNV	Abcb4:NM_008830:exon27:c.G3624T:p.K1208N	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.09993329	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	8989678	12A2p6	cell line	sgMsh2	8989678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	144	0	0	NA	exonic	Crot	nonsynonymous SNV	Crot:NM_023733:exon4:c.A168C:p.Q56H	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999926	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	9118463	12A2p6	cell line	sgMsh2	9118463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	121	0	0	NA	exonic	Tmem243	nonsynonymous SNV	Tmem243:NM_001081029:exon5:c.T244C:p.Y82H	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999526	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	9422342	12A2p6	cell line	sgMsh2	9422342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	281	0	0	NA	exonic	Elapor2	synonymous SNV	"Elapor2:NM_001359885:exon7:c.T699C:p.T233T,Elapor2:NM_001359886:exon7:c.T699C:p.T233T,Elapor2:NM_001359884:exon8:c.T1038C:p.T346T,Elapor2:NM_172706:exon8:c.T1038C:p.T346T"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	1	1	1.11E-09	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr5	9512114	12A2p6	cell line	sgMsh2	9512114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	358	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon4:c.G1735T:p.G579C	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	1.27E-08	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	9589774	12A2p6	cell line	sgMsh2	9589774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	308	0	0	NA	exonic	Grm3	nonsynonymous SNV	Grm3:NM_181850:exon2:c.G270T:p.K90N	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9998969	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Vardict	2	0.039	195	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.183155528	3	3.94E-09	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	14540296	12A2p6	cell line	sgMsh2	14540296	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	145	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon3:c.T2609C:p.F870S,Pclo:NM_011995:exon3:c.T2609C:p.F870S"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9988206	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	14679484	12A2p6	cell line	sgMsh2	14679484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	281	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.A8355G:p.L2785L,Pclo:NM_011995:exon5:c.A8355G:p.L2785L"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9999347	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	110	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344388-14859185	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9881875	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	16025798	12A2p6	cell line	sgMsh2	16025798	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	162	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110843:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110844:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110845:exon3:c.G227A:p.R76H,Cacna2d1:NM_001110846:exon3:c.G227A:p.R76H,Cacna2d1:NM_009784:exon3:c.G227A:p.R76H"	5qA2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9963353	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	16246742	12A2p6	cell line	sgMsh2	16246742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	164	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110844:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110845:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110846:exon7:c.T603C:p.P201P,Cacna2d1:NM_009784:exon7:c.T603C:p.P201P"	5qA2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9991428	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr5	16359015	12A2p6	cell line	sgMsh2	16359015	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	153	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.G2623A:p.D875N,Cacna2d1:NM_009784:exon32:c.G2638A:p.D880N,Cacna2d1:NM_001110843:exon33:c.G2695A:p.D899N,Cacna2d1:NM_001110844:exon33:c.G2659A:p.D887N,Cacna2d1:NM_001110845:exon33:c.G2644A:p.D882N"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999964	TGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	175	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.216029597	3	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	16578469	12A2p6	cell line	sgMsh2	16578469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	232	0	0	NA	exonic	Hgf	nonsynonymous SNV	"Hgf:NM_001289461:exon7:c.A761G:p.N254S,Hgf:NM_001289458:exon8:c.A776G:p.N259S,Hgf:NM_001289459:exon8:c.A776G:p.N259S,Hgf:NM_010427:exon8:c.A776G:p.N259S"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	6.94E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	16618861	12A2p6	cell line	sgMsh2	16618861	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.167	228	0	0	NA	exonic	Hgf	frameshift insertion	"Hgf:NM_001289461:exon18:c.2041dupA:p.M682Nfs*58,Hgf:NM_001289458:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_001289459:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_010427:exon19:c.2056dupA:p.M687Nfs*58"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.784281364	NA	NA	ACA	frameshift	NA	NA	NA	1
M6_p20	chr5	19227361	12A2p6	cell line	sgMsh2	19227361	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	29	0	0	NA	exonic	Magi2	nonsynonymous SNV	Magi2:NM_001170746:exon1:c.G73A:p.E25K	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9248375	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	20569240	12A2p6	cell line	sgMsh2	20569240	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	111	0	0	NA	exonic	Magi2	nonsynonymous SNV	"Magi2:NM_001170745:exon14:c.T2197G:p.F733V,Magi2:NM_015823:exon15:c.T2239G:p.F747V,Magi2:NM_001170746:exon16:c.T2728G:p.F910V"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	1	0.9998936	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	20886392	12A2p6	cell line	sgMsh2	20886392	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	129	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A154G:p.M52V	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9891487	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	252	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9999705	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	20896261	12A2p6	cell line	sgMsh2	20896261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	142	0	0	NA	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2280C:p.S760S	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999913	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr5	21303253	12A2p6	cell line	sgMsh2	21303253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	250	0	0	NA	exonic	Ccdc146	nonsynonymous SNV	Ccdc146:NM_029195:exon14:c.A1796G:p.N599S	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.98725	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	21523589	12A2p6	cell line	sgMsh2	21523589	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	332	0	0	NA	exonic	Fbxl13	synonymous SNV	"Fbxl13:NM_177076:exon14:c.T1501C:p.L501L,Fbxl13:NM_001199632:exon15:c.T1600C:p.L534L"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	AAA	synonymous	AAAGTG	13	AAAGTGAAAGTGA	NA
M6_p20	chr5	21796579	12A2p6	cell line	sgMsh2	21796579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	136	0	0	NA	exonic	Psmc2	synonymous SNV	"Psmc2:NM_001368661:exon4:c.T237C:p.D79D,Psmc2:NM_011188:exon5:c.T237C:p.D79D"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999859	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr5	22550222	12A2p6	cell line	sgMsh2	22550222	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	169	0	0	NA	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon1:c.A42G:p.Q14Q	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.999999	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr5	23502845	12A2p6	cell line	sgMsh2	23502845	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	174	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon26:c.A5405G:p.H1802R	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9968671	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	67	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9649212	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr5	24415437	12A2p6	cell line	sgMsh2	24415437	G	-	Deletion	Mutect2;Vardict	2	0.244	56	0	0	NA	exonic	Asic3	frameshift deletion	"Asic3:NM_001310474:exon2:c.585delG:p.A197Qfs*76,Asic3:NM_183000:exon2:c.585delG:p.A197Qfs*76"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M6_p20	chr5	24440726	12A2p6	cell line	sgMsh2	24440726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	202	0	0	NA	exonic	Slc4a2	nonsynonymous SNV	"Slc4a2:NM_001253892:exon22:c.T3688C:p.Y1230H,Slc4a2:NM_009207:exon23:c.T3688C:p.Y1230H"	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.999936	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	25315222	12A2p6	cell line	sgMsh2	25315222	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	232	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon36:c.T5889G:p.P1963P	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	6.94E-09	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	157	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999974	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	565	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9997342	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr5	29233094	12A2p6	cell line	sgMsh2	29233094	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	254	0	0	NA	exonic	Lmbr1	nonsynonymous SNV	Lmbr1:NM_020295:exon17:c.C1442A:p.P481H	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	30114031	12A2p6	cell line	sgMsh2	30114031	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	55	0	0	NA	exonic	Garem2	nonsynonymous SNV	Garem2:NM_001167879:exon4:c.A490G:p.T164A	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9558732	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	30145301	12A2p6	cell line	sgMsh2	30145301	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	276	0	0	NA	exonic	Hadha	nonsynonymous SNV	Hadha:NM_178878:exon4:c.A248C:p.D83A	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	1.84E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	30196311	12A2p6	cell line	sgMsh2	30196311	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	52	0	0	NA	exonic	Adgrf3	synonymous SNV	Adgrf3:NM_001014394:exon10:c.A2718G:p.G906G	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.8442767	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr5	30534207	12A2p6	cell line	sgMsh2	30534207	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	109	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon3:c.T169C:p.S57P	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9892354	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	30920199	12A2p6	cell line	sgMsh2	30920199	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	88	0	0	NA	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon7:c.T2698C:p.Y900H	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.7047688	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	30958349	12A2p6	cell line	sgMsh2	30958349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	136	0	0	NA	exonic	Preb	synonymous SNV	"Preb:NM_001294302:exon5:c.A636G:p.T212T,Preb:NM_016703:exon5:c.A636G:p.T212T"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9266302	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	178	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5176117	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31058101	12A2p6	cell line	sgMsh2	31058101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	99	0	0	NA	exonic	Cad	synonymous SNV	"Cad:NM_001289522:exon3:c.A255G:p.G85G,Cad:NM_001289523:exon3:c.A255G:p.G85G,Cad:NM_023525:exon3:c.A255G:p.G85G"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.999719	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr5	31073249	12A2p6	cell line	sgMsh2	31073249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	96	0	0	NA	exonic	Cad	nonsynonymous SNV	"Cad:NM_001289522:exon30:c.A4836G:p.I1612M,Cad:NM_001289523:exon30:c.A4836G:p.I1612M,Cad:NM_023525:exon30:c.A4836G:p.I1612M"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9443959	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31109641	12A2p6	cell line	sgMsh2	31109641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	168	0	0	NA	exonic	Dnajc5g	nonsynonymous SNV	"Dnajc5g:NM_001347324:exon3:c.A260G:p.Y87C,Dnajc5g:NM_177677:exon3:c.A260G:p.Y87C"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.589296	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31159468	12A2p6	cell line	sgMsh2	31159468	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	74	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon15:c.C2081T:p.A694V	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	0.8560752	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.465	102	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M6_p20	chr5	31208020	12A2p6	cell line	sgMsh2	31208020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	179	0	0	NA	exonic	Ppm1g	nonsynonymous SNV	Ppm1g:NM_008014:exon3:c.T269C:p.L90P	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999867	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31246336	12A2p6	cell line	sgMsh2	31246336	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	106	0	0	NA	exonic	Nrbp1	nonsynonymous SNV	Nrbp1:NM_001347326:exon8:c.T676A:p.F226I	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998405	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr5	31295080	12A2p6	cell line	sgMsh2	31295080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	113	0	0	NA	exonic	Fndc4	nonsynonymous SNV	"Fndc4:NM_001356945:exon3:c.A163G:p.R55G,Fndc4:NM_001356946:exon3:c.A163G:p.R55G,Fndc4:NM_001378890:exon3:c.A163G:p.R55G,Fndc4:NM_022424:exon3:c.A163G:p.R55G"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9794325	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	31487300	12A2p6	cell line	sgMsh2	31487300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	32	0	0	NA	exonic	4930548H24Rik	synonymous SNV	4930548H24Rik:NM_026296:exon2:c.A396G:p.K132K	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.8902282	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Vardict	2	0.081	56	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.7311741	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	32262374	12A2p6	cell line	sgMsh2	32262374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	242	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon3:c.T74A:p.I25N	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.8454891	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	142	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.375703647	3	0.9786646	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	32655595	12A2p6	cell line	sgMsh2	32655595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	298	0	0	NA	exonic	Yes1	nonsynonymous SNV	"Yes1:NM_001205132:exon8:c.T1042C:p.F348L,Yes1:NM_001205133:exon8:c.T1042C:p.F348L,Yes1:NM_009535:exon8:c.T1042C:p.F348L"	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.9985224	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	318	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.9617863	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	33147043	12A2p6	cell line	sgMsh2	33147043	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	224	0	0	NA	exonic	Slc5a1	nonsynonymous SNV	Slc5a1:NM_019810:exon9:c.T986C:p.V329A	5qB1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	0.999986	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	34129276	12A2p6	cell line	sgMsh2	34129276	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	195	0	0	NA	exonic	Poln	nonsynonymous SNV	"Poln:NM_001289803:exon4:c.A547G:p.T183A,Poln:NM_181857:exon4:c.A547G:p.T183A,Poln:NM_001289804:exon5:c.A547G:p.T183A"	5qB2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9997423	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	35087007	12A2p6	cell line	sgMsh2	35087007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	40	0	0	NA	exonic	Dok7	nonsynonymous SNV	"Dok7:NM_172708:exon9:c.T1594C:p.S532P,Dok7:NM_001348478:exon10:c.T1705C:p.S569P"	5qB2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.8968421	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	36824150	12A2p6	cell line	sgMsh2	36824150	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	180	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon5:c.A622G:p.T208A	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9625643	GTG	nonsynonymous	GTGA	8	GTGAGTGA	NA
M6_p20	chr5	38106637	12A2p6	cell line	sgMsh2	38106637	A	-	Deletion	Mutect2;Vardict	2	0.104	135	0	0	NA	exonic	Stx18	frameshift deletion	"Stx18:NM_001359398:exon3:c.264delA:p.R90Efs*13,Stx18:NM_001289535:exon4:c.426delA:p.R144Efs*13,Stx18:NM_026959:exon4:c.426delA:p.R144Efs*13"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.488414742	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr5	38144744	12A2p6	cell line	sgMsh2	38144744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	189	0	0	NA	exonic	Nsg1	nonsynonymous SNV	"Nsg1:NM_001359090:exon3:c.T322C:p.Y108H,Nsg1:NM_001359091:exon4:c.T322C:p.Y108H,Nsg1:NM_001359092:exon4:c.T322C:p.Y108H,Nsg1:NM_010942:exon4:c.T322C:p.Y108H"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	41794340	12A2p6	cell line	sgMsh2	41794340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	54	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon25:c.T8727C:p.S2909S,Bod1l:NM_001310601:exon25:c.T8727C:p.S2909S"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	1	0.9893843	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	41817204	12A2p6	cell line	sgMsh2	41817204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	321	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6766T:p.R2256C,Bod1l:NM_001310601:exon10:c.C6766T:p.R2256C"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	41817776	12A2p6	cell line	sgMsh2	41817776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	119	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6194T:p.T2065I,Bod1l:NM_001310601:exon10:c.C6194T:p.T2065I"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	9.74E-09	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	41828848	12A2p6	cell line	sgMsh2	41828848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	310	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon6:c.G1390A:p.V464I,Bod1l:NM_001310601:exon6:c.G1390A:p.V464I"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	0.9990467	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	44541790	12A2p6	cell line	sgMsh2	44541790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	197	0	0	NA	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon3:c.A305G:p.Y102C,Ldb2:NM_001286348:exon3:c.A305G:p.Y102C,Ldb2:NM_001347349:exon3:c.A305G:p.Y102C,Ldb2:NM_001359070:exon3:c.A305G:p.Y102C,Ldb2:NM_001359071:exon3:c.A305G:p.Y102C,Ldb2:NM_010698:exon3:c.A305G:p.Y102C"	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	48374537	12A2p6	cell line	sgMsh2	48374537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	126	0	0	NA	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon3:c.C206A:p.P69H	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999684	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	49987499	12A2p6	cell line	sgMsh2	49987499	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	37	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon12:c.G1751A:p.S584N	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9444725	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	50025736	12A2p6	cell line	sgMsh2	50025736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	121	0	0	NA	exonic	Adgra3	synonymous SNV	Adgra3:NM_133911:exon2:c.A267G:p.S89S	5qB3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.978188	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr5	51473680	12A2p6	cell line	sgMsh2	51473680	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	380	0	0	NA	exonic	Ppargc1a	nonsynonymous SNV	Ppargc1a:NM_008904:exon8:c.T1606C:p.S536P	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999941	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	52171429	12A2p6	cell line	sgMsh2	52171429	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	113	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon4:c.T856G:p.L286V,Dhx15:NM_007839:exon4:c.T856G:p.L286V"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.8685349	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	52376478	12A2p6	cell line	sgMsh2	52376478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	38	0	0	NA	exonic	Ccdc149	nonsynonymous SNV	"Ccdc149:NM_001256059:exon12:c.A1345T:p.T449S,Ccdc149:NM_001379231:exon13:c.A1378T:p.T460S"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9250054	GTC	nonsynonymous	TCAG	9	TCAGTCAGT	NA
M6_p20	chr5	53200387	12A2p6	cell line	sgMsh2	53200387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	174	0	0	NA	exonic	Sel1l3	nonsynonymous SNV	Sel1l3:NM_172710:exon2:c.T262G:p.F88V	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999994	AAG	nonsynonymous	AAAT	11	AAATAAATAAA	NA
M6_p20	chr5	53642025	12A2p6	cell line	sgMsh2	53642025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	79	0	0	NA	exonic	Rbpj	frameshift deletion	"Rbpj:NM_001080927:exon4:c.157delT:p.C55Afs*37,Rbpj:NM_001080928:exon4:c.151delT:p.C53Afs*37,Rbpj:NM_001359152:exon4:c.157delT:p.C55Afs*37,Rbpj:NM_009035:exon4:c.274delT:p.C94Afs*37,Rbpj:NM_001277116:exon6:c.217delT:p.C75Afs*37"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr5	53700084	12A2p6	cell line	sgMsh2	53700084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	153	0	0	NA	exonic	Cckar	nonsynonymous SNV	"Cckar:NM_001347354:exon5:c.T770C:p.V257A,Cckar:NM_009827:exon5:c.T983C:p.V328A"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999964	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	131	0	0	NA	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9879202	GTT	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr5	57719505	12A2p6	cell line	sgMsh2	57719505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	127	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T401G:p.L134R,Pcdh7:NM_001310606:exon1:c.T401G:p.L134R,Pcdh7:NM_001310608:exon1:c.T401G:p.L134R,Pcdh7:NM_018764:exon1:c.T401G:p.L134R"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	8.51E-08	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	57721985	12A2p6	cell line	sgMsh2	57721985	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	160	0	0	NA	exonic	Pcdh7	stopgain	"Pcdh7:NM_001122758:exon1:c.G2881T:p.G961X,Pcdh7:NM_001310606:exon1:c.G2881T:p.G961X,Pcdh7:NM_001310608:exon1:c.G2881T:p.G961X,Pcdh7:NM_018764:exon1:c.G2881T:p.G961X"	5qC1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9970139	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	61809783	12A2p6	cell line	sgMsh2	61809783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	274	0	0	NA	exonic	G6pd2	synonymous SNV	G6pd2:NM_019468:exon1:c.T900C:p.T300T	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9985769	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	62730687	12A2p6	cell line	sgMsh2	62730687	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	65	0	0	NA	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon6:c.T1315G:p.F439V	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8160742	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	62730745	12A2p6	cell line	sgMsh2	62730745	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	70	0	0	NA	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon6:c.C1257T:p.C419C	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9945973	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	237	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.9157369	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	63898504	12A2p6	cell line	sgMsh2	63898504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	22	0	0	NA	exonic	0610040J01Rik	synonymous SNV	0610040J01Rik:NM_029554:exon4:c.A582C:p.T194T	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.8742441	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	64926353	12A2p6	cell line	sgMsh2	64926353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	211	0	0	NA	exonic	Tlr1	nonsynonymous SNV	"Tlr1:NM_030682:exon3:c.A880G:p.M294V,Tlr1:NM_001276445:exon4:c.A880G:p.M294V"	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9997289	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	62	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.6375487	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	65594882	12A2p6	cell line	sgMsh2	65594882	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	307	0	0	NA	exonic	Ube2k	nonsynonymous SNV	"Ube2k:NM_001310618:exon5:c.T383C:p.V128A,Ube2k:NM_001310619:exon6:c.T326C:p.V109A,Ube2k:NM_016786:exon7:c.T536C:p.V179A"	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	58	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	181	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.9913468	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	67611390	12A2p6	cell line	sgMsh2	67611390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	43	0	0	NA	exonic	Shisa3	nonsynonymous SNV	Shisa3:NM_001033415:exon2:c.T632C:p.L211P	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.5836048	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	68166268	12A2p6	cell line	sgMsh2	68166268	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	163	0	0	NA	exonic	Grxcr1	stopgain	Grxcr1:NM_001018019:exon4:c.C888A:p.C296X	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	0.9999864	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	165	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9987502	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	69340751	12A2p6	cell line	sgMsh2	69340751	G	A	SNV	Mutect2;Vardict	2	0.231	17	0	0	NA	exonic	Kctd8	nonsynonymous SNV	Kctd8:NM_175519:exon1:c.C551T:p.A184V	5qC3.1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.821154	AGC	nonsynonymous	GCC	9	GCCGCCGCC	NA
M6_p20	chr5	72136781	12A2p6	cell line	sgMsh2	72136781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	142	0	0	NA	exonic	Gabrb1	nonsynonymous SNV	"Gabrb1:NM_008069:exon9:c.T1397C:p.V466A,Gabrb1:NM_001370968:exon10:c.T1298C:p.V433A"	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9995386	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	72301569	12A2p6	cell line	sgMsh2	72301569	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.143	41	0	0	NA	exonic	Corin	nonsynonymous SNV	"Corin:NM_001122756:exon22:c.T3061C:p.Y1021H,Corin:NM_016869:exon22:c.T3259C:p.Y1087H"	5qC3.2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.6720164	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	75166548	12A2p6	cell line	sgMsh2	75166548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	200	0	0	NA	exonic	Pdgfra	synonymous SNV	"Pdgfra:NM_001083316:exon4:c.T405C:p.D135D,Pdgfra:NM_001347718:exon4:c.T405C:p.D135D,Pdgfra:NM_001347719:exon4:c.T405C:p.D135D,Pdgfra:NM_011058:exon4:c.T405C:p.D135D"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.821851729	1	0.9941248	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	211	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	3.35E-08	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	75620996	12A2p6	cell line	sgMsh2	75620996	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	108	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon6:c.G1084T:p.G362W,Kit:NM_021099:exon6:c.G1084T:p.G362W"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.849192	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	75962720	12A2p6	cell line	sgMsh2	75962720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	92	0	0	NA	exonic	Kdr	nonsynonymous SNV	"Kdr:NM_001363216:exon10:c.T1408C:p.Y470H,Kdr:NM_010612:exon10:c.T1408C:p.Y470H"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9925945	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	140	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.9687505	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.341	114	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M6_p20	chr5	76848823	12A2p6	cell line	sgMsh2	76848823	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.12	68	0	0	NA	exonic	Cracd	synonymous SNV	Cracd:NM_001163793:exon3:c.T127C:p.L43L	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.9424082	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr5	76925791	12A2p6	cell line	sgMsh2	76925791	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	120	0	0	NA	exonic	Ppat	synonymous SNV	Ppat:NM_172146:exon3:c.C285A:p.A95A	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6182882	TGG	synonymous	NA	NA	NA	NA
M6_p20	chr5	77060825	12A2p6	cell line	sgMsh2	77060825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	146	0	0	NA	exonic	Thegl	nonsynonymous SNV	Thegl:NM_027970:exon8:c.T1199C:p.V400A	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999937	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	77087800	12A2p6	cell line	sgMsh2	77087800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	94	0	0	NA	exonic	Hopx	nonsynonymous SNV	"Hopx:NM_001159901:exon2:c.G161A:p.R54H,Hopx:NM_001159900:exon3:c.G161A:p.R54H,Hopx:NM_175606:exon3:c.G161A:p.R54H"	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9995789	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Vardict	2	0.075	79	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.926126	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr5	77345396	12A2p6	cell line	sgMsh2	77345396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	141	0	0	NA	exonic	Polr2b	nonsynonymous SNV	Polr2b:NM_153798:exon23:c.T3224C:p.M1075T	5qC3.3	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9927326	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	84156458	12A2p6	cell line	sgMsh2	84156458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	112	0	0	NA	exonic	Epha5	nonsynonymous SNV	Epha5:NM_007937:exon4:c.G995A:p.R332H	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	7.99E-06	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	86148870	12A2p6	cell line	sgMsh2	86148870	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	113	0	0	NA	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon11:c.A959T:p.E320V	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9794325	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	86428627	12A2p6	cell line	sgMsh2	86428627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	205	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon5:c.A364G:p.S122G	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	7.01E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	147	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9968946	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	86661610	12A2p6	cell line	sgMsh2	86661610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	304	0	0	NA	exonic	Tmprss11b	nonsynonymous SNV	Tmprss11b:NM_177024:exon9:c.A1022G:p.Y341C	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9998841	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87474945	12A2p6	cell line	sgMsh2	87474945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	151	0	0	NA	exonic	Ugt2a2	nonsynonymous SNV	Ugt2a2:NM_001024148:exon2:c.G163T:p.A55S	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999958	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87587646	12A2p6	cell line	sgMsh2	87587646	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	269	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon3:c.G172A:p.V58M	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9998543	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87587657	12A2p6	cell line	sgMsh2	87587657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	274	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon3:c.T161C:p.I54T	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9997211	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87671530	12A2p6	cell line	sgMsh2	87671530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	240	0	0	NA	exonic	Csn1s1	synonymous SNV	"Csn1s1:NM_001286016:exon8:c.T219C:p.T73T,Csn1s1:NM_007784:exon8:c.T219C:p.T73T"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9993608	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	102	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	7.79E-06	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	129	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	9.63E-08	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	112	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.8925911	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	87887345	12A2p6	cell line	sgMsh2	87887345	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	0	0	NA	exonic	Odam	nonsynonymous SNV	Odam:NM_027128:exon5:c.C167T:p.P56L	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9529007	CCC	nonsynonymous	TCCCT	10	TCCCTTCCCT	NA
M6_p20	chr5	87980248	12A2p6	cell line	sgMsh2	87980248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	283	0	0	NA	exonic	Cabs1	nonsynonymous SNV	Cabs1:NM_027631:exon1:c.A757G:p.S253G	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9999986	AAG	nonsynonymous	ACTAA	10	ACTAAACTAA	NA
M6_p20	chr5	87980456	12A2p6	cell line	sgMsh2	87980456	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	443	0	0	NA	exonic	Cabs1	nonsynonymous SNV	Cabs1:NM_027631:exon1:c.C965T:p.A322V	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.6518275	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	88463329	12A2p6	cell line	sgMsh2	88463329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	85	0	0	NA	exonic	Ambn	nonsynonymous SNV	"Ambn:NM_001303431:exon6:c.A412G:p.T138A,Ambn:NM_009664:exon6:c.A367G:p.T123A"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9991279	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	88555637	12A2p6	cell line	sgMsh2	88555637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	60	0	0	NA	exonic	Utp3	nonsynonymous SNV	Utp3:NM_023054:exon1:c.A1024G:p.T342A	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.6365768	AAC	nonsynonymous	AACCAA	12	AACCAAAACCAA	NA
M6_p20	chr5	88672714	12A2p6	cell line	sgMsh2	88672714	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	135	0	0	NA	exonic	Grsf1	synonymous SNV	"Grsf1:NM_001098476:exon3:c.T207C:p.N69N,Grsf1:NM_178700:exon3:c.T558C:p.N186N"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.965015	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Vardict	2	0.022	388	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.103318503	3	1	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	274	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	1	1.20E-09	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	268	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	2	1	1	1.32E-09	AAC	synonymous	A	5	AAAAA	NA
M6_p20	chr5	90260161	12A2p6	cell line	sgMsh2	90260161	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	588	0	0	NA	exonic	Ankrd17	nonsynonymous SNV	"Ankrd17:NM_198010:exon22:c.G3443A:p.R1148H,Ankrd17:NM_030886:exon23:c.G4196A:p.R1399H"	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	174	0	0	NA	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9360812	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	152	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.974722	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	92070423	12A2p6	cell line	sgMsh2	92070423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	140	0	0	NA	exonic	G3bp2	nonsynonymous SNV	"G3bp2:NM_001080794:exon3:c.T111A:p.N37K,G3bp2:NM_001080795:exon3:c.T111A:p.N37K,G3bp2:NM_001080796:exon3:c.T111A:p.N37K,G3bp2:NM_001080797:exon3:c.T111A:p.N37K,G3bp2:NM_001359195:exon3:c.T111A:p.N37K,G3bp2:NM_001359196:exon3:c.T111A:p.N37K,G3bp2:NM_001359197:exon3:c.T111A:p.N37K,G3bp2:NM_011816:exon3:c.T111A:p.N37K"	5qE2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999898	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	92181489	12A2p6	cell line	sgMsh2	92181489	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	122	0	0	NA	exonic	Uso1	nonsynonymous SNV	Uso1:NM_019490:exon12:c.T1235C:p.I412T	5qE2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.6940141	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	356	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.7517221	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	92933813	12A2p6	cell line	sgMsh2	92933813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	96	0	0	NA	exonic	Shroom3	nonsynonymous SNV	Shroom3:NM_015756:exon4:c.A512G:p.Q171R	5qE2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	0.925170232	1	0.9965703	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	92941728	12A2p6	cell line	sgMsh2	92941728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	15	0	0	NA	exonic	Shroom3	nonsynonymous SNV	"Shroom3:NM_001077595:exon4:c.A1811G:p.E604G,Shroom3:NM_001077596:exon4:c.A1811G:p.E604G,Shroom3:NM_015756:exon5:c.A2336G:p.E779G"	5qE2	chr5-15714380-94221358	4	2	2	0.93	4.367554902	NA	1	1	1	0.7948483	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	96709879	12A2p6	cell line	sgMsh2	96709879	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	109	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon44:c.A6031T:p.R2011W	5qE3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.8353283	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	97938118	12A2p6	cell line	sgMsh2	97938118	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	96	0	0	NA	exonic	Antxr2	nonsynonymous SNV	Antxr2:NM_133738:exon16:c.T1394C:p.V465A	5qE3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.5820687	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	100037641	12A2p6	cell line	sgMsh2	100037641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	47	0	0	NA	exonic	Hnrnpdl	nonsynonymous SNV	Hnrnpdl:NM_016690:exon3:c.A701G:p.K234R	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	8.74E-05	CTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr5	100485449	12A2p6	cell line	sgMsh2	100485449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	179	0	0	NA	exonic	Lin54	synonymous SNV	"Lin54:NM_001115010:exon2:c.T375C:p.D125D,Lin54:NM_172714:exon2:c.T375C:p.D125D"	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.9568313	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr5	100533370	12A2p6	cell line	sgMsh2	100533370	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	309	0	0	NA	exonic	Cops4	nonsynonymous SNV	"Cops4:NM_001359203:exon4:c.A386C:p.N129T,Cops4:NM_012001:exon5:c.A539C:p.N180T,Cops4:NM_001359204:exon6:c.A386C:p.N129T"	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.441451786	3	0.8123556	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	100783064	12A2p6	cell line	sgMsh2	100783064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	97	0	0	NA	exonic	Helq	nonsynonymous SNV	Helq:NM_001081107:exon9:c.A1819G:p.T607A	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9749471	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	101844611	12A2p6	cell line	sgMsh2	101844611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	190	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon65:c.A10142G:p.H3381R	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.502503628	2	0.9764783	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	101849358	12A2p6	cell line	sgMsh2	101849358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	71	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon61:c.A9400G:p.I3134V	5qE4	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.997297	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	160	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9989718	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	101951305	12A2p6	cell line	sgMsh2	101951305	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	112	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon9:c.C876A:p.D292E	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9821065	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	102892466	12A2p6	cell line	sgMsh2	102892466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	105	0	0	NA	exonic	Arhgap24	nonsynonymous SNV	"Arhgap24:NM_001346585:exon6:c.A1277G:p.K426R,Arhgap24:NM_001286468:exon7:c.A1268G:p.K423R,Arhgap24:NM_146161:exon8:c.A1268G:p.K423R,Arhgap24:NM_029270:exon9:c.A1547G:p.K516R"	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9634867	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	104337342	12A2p6	cell line	sgMsh2	104337342	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.107	85	0	0	NA	exonic	Mepe	nonsynonymous SNV	Mepe:NM_053172:exon3:c.A347C:p.D116A	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.502503628	2	0.883303	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	104478920	12A2p6	cell line	sgMsh2	104478920	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	164	0	0	NA	exonic	Pkd2	stopgain	Pkd2:NM_008861:exon4:c.C967T:p.R323X	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9632757	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	105118429	12A2p6	cell line	sgMsh2	105118429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	334	0	0	NA	exonic	Gbp4	nonsynonymous SNV	"Gbp4:NM_001359080:exon10:c.T1337C:p.L446P,Gbp4:NM_001359081:exon10:c.T1337C:p.L446P,Gbp4:NM_001256005:exon11:c.T1745C:p.L582P,Gbp4:NM_001359082:exon11:c.T1337C:p.L446P,Gbp4:NM_008620:exon11:c.T1337C:p.L446P,Gbp4:NM_001359079:exon12:c.T1784C:p.L595P"	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.6064421	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	107619891	12A2p6	cell line	sgMsh2	107619891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	91	0	0	NA	exonic	Rpap2	synonymous SNV	"Rpap2:NM_001163461:exon8:c.C594T:p.G198G,Rpap2:NM_001163462:exon8:c.C357T:p.G119G,Rpap2:NM_001289569:exon8:c.C363T:p.G121G,Rpap2:NM_001289570:exon8:c.C594T:p.G198G,Rpap2:NM_001359916:exon8:c.C567T:p.G189G,Rpap2:NM_001359917:exon8:c.C357T:p.G119G,Rpap2:NM_001359918:exon8:c.C357T:p.G119G,Rpap2:NM_144911:exon8:c.C594T:p.G198G"	5qE5	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9922066	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr5	107720172	12A2p6	cell line	sgMsh2	107720172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	240	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon5:c.A1031G:p.Q344R,Gfi1:NM_001267621:exon6:c.A1229G:p.Q410R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9573127	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	107721245	12A2p6	cell line	sgMsh2	107721245	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	26	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon4:c.C802G:p.P268A,Gfi1:NM_001267621:exon5:c.C1000G:p.P334A"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	0.671942	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108104296	12A2p6	cell line	sgMsh2	108104296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	55	0	0	NA	exonic	Mtf2	synonymous SNV	"Mtf2:NM_001253880:exon11:c.T991C:p.L331L,Mtf2:NM_001253879:exon13:c.T991C:p.L331L,Mtf2:NM_013827:exon13:c.T1297C:p.L433L,Mtf2:NM_001253877:exon14:c.T991C:p.L331L,Mtf2:NM_001253878:exon14:c.T991C:p.L331L,Mtf2:NM_001359088:exon14:c.T1330C:p.L444L,Mtf2:NM_001359089:exon15:c.T991C:p.L331L"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.8902882	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	94	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9736817	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108332107	12A2p6	cell line	sgMsh2	108332107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	156	0	0	NA	exonic	Pigg	nonsynonymous SNV	"Pigg:NM_001081234:exon7:c.T1247C:p.L416P,Pigg:NM_001310689:exon7:c.T1247C:p.L416P,Pigg:NM_001370998:exon7:c.T1247C:p.L416P"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.94865171	1	0.9999653	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	52	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9875423	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108604387	12A2p6	cell line	sgMsh2	108604387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	67	0	0	NA	exonic	Gak	nonsynonymous SNV	"Gak:NM_001359924:exon8:c.A521G:p.N174S,Gak:NM_001282052:exon9:c.A368G:p.N123S,Gak:NM_001282051:exon10:c.A521G:p.N174S,Gak:NM_001359922:exon10:c.A521G:p.N174S,Gak:NM_001359923:exon10:c.A521G:p.N174S,Gak:NM_153569:exon10:c.A1004G:p.N335S"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.7389595	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108680967	12A2p6	cell line	sgMsh2	108680967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	138	0	0	NA	exonic	Idua	nonsynonymous SNV	"Idua:NM_172997:exon8:c.T935G:p.F312C,Idua:NM_008325:exon9:c.T1076G:p.F359C"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9998324	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	108797917	12A2p6	cell line	sgMsh2	108797917	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	830	0	0	NA	exonic	Vmn2r8	nonsynonymous SNV	Vmn2r8:NM_001104620:exon6:c.A1823T:p.K608M	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.9919914	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	109156479	12A2p6	cell line	sgMsh2	109156479	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	657	0	0	NA	exonic	Vmn2r13	synonymous SNV	"Vmn2r13:NM_001104624:exon6:c.G2085A:p.L695L,Vmn2r13:NM_001384974:exon6:c.G2082A:p.L694L"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.450844377	3	0.8247856	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr5	109340546	12A2p6	cell line	sgMsh2	109340546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	341	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon3:c.T1284C:p.S428S,Vmn2r16:NM_001385189:exon3:c.T1284C:p.S428S"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9999881	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	109420209	12A2p6	cell line	sgMsh2	109420209	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	18	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon1:c.T197A:p.I66N,Vmn2r17:NM_001385190:exon1:c.T197A:p.I66N"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.8331388	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	110189662	12A2p6	cell line	sgMsh2	110189662	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	92	0	0	NA	exonic	Golga3	synonymous SNV	"Golga3:NM_001347389:exon7:c.A1335G:p.L445L,Golga3:NM_008146:exon7:c.A1215G:p.L405L"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.7191543	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	185	0	0	NA	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	110303958	12A2p6	cell line	sgMsh2	110303958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	213	0	0	NA	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon23:c.A2665G:p.T889A	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9989216	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	110787217	12A2p6	cell line	sgMsh2	110787217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	70	0	0	NA	exonic	Ulk1	nonsynonymous SNV	"Ulk1:NM_001347394:exon26:c.A2849T:p.Y950F,Ulk1:NM_009469:exon26:c.A2831T:p.Y944F"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.6171385	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	113279221	12A2p6	cell line	sgMsh2	113279221	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	81	0	0	NA	exonic	Sgsm1	synonymous SNV	"Sgsm1:NM_001309526:exon3:c.C342A:p.S114S,Sgsm1:NM_001309528:exon3:c.C342A:p.S114S,Sgsm1:NM_001162965:exon12:c.C1203A:p.S401S,Sgsm1:NM_001254731:exon12:c.C1203A:p.S401S,Sgsm1:NM_172718:exon12:c.C1203A:p.S401S"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.998795	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr5	114446235	12A2p6	cell line	sgMsh2	114446235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	125	0	0	NA	exonic	Mvk	nonsynonymous SNV	"Mvk:NM_001306205:exon3:c.A155G:p.N52S,Mvk:NM_023556:exon3:c.A155G:p.N52S"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9996257	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	114733245	12A2p6	cell line	sgMsh2	114733245	T	C	SNV	Mutect2;Vardict	2	0.143	31	0	0	NA	exonic	Git2	nonsynonymous SNV	"Git2:NM_001077360:exon16:c.A1711G:p.T571A,Git2:NM_001077359:exon17:c.A1714G:p.T572A,Git2:NM_019834:exon17:c.A1798G:p.T600A,Git2:NM_001347400:exon18:c.A1951G:p.T651A"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.6135194	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	114937417	12A2p6	cell line	sgMsh2	114937417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	159	0	0	NA	exonic	Oasl1	stoploss	"Oasl1:NM_001359946:exon5:c.A998T:p.X333L,Oasl1:NM_001359945:exon6:c.A1535T:p.X512L,Oasl1:NM_145209:exon7:c.A1535T:p.X512L"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999978	TAG	nonsynonymous	AGCT	8	AGCTAGCT	NA
M6_p20	chr5	115127330	12A2p6	cell line	sgMsh2	115127330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	125	0	0	NA	exonic	Unc119b	nonsynonymous SNV	Unc119b:NM_175352:exon3:c.T442C:p.F148L	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9338162	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	115295713	12A2p6	cell line	sgMsh2	115295713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	193	0	0	NA	exonic	Coq5	nonsynonymous SNV	Coq5:NM_026504:exon6:c.T818C:p.V273A	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9995952	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	115587846	12A2p6	cell line	sgMsh2	115587846	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	73	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon17:c.T1670A:p.L557H	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.737318408	1	0.5083943	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	54	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9535854	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	115640184	12A2p6	cell line	sgMsh2	115640184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	172	0	0	NA	exonic	Rab35	nonsynonymous SNV	Rab35:NM_198163:exon3:c.T208C:p.F70L	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9931442	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	85	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9981631	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	117555453	12A2p6	cell line	sgMsh2	117555453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	45	0	0	NA	exonic	Ksr2	nonsynonymous SNV	Ksr2:NM_001312914:exon4:c.G965A:p.R322H	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9782528	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	118742282	12A2p6	cell line	sgMsh2	118742282	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	110	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon17:c.T3438C:p.D1146D,Med13l:NM_172424:exon17:c.T3438C:p.D1146D"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9896664	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr5	118755543	12A2p6	cell line	sgMsh2	118755543	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.114	60	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon27:c.T5913C:p.A1971A,Med13l:NM_172424:exon27:c.T5886C:p.A1962A"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.535377698	2	0.8961216	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	119675671	12A2p6	cell line	sgMsh2	119675671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	139	0	0	NA	exonic	Tbx3	synonymous SNV	"Tbx3:NM_011535:exon4:c.A831G:p.E277E,Tbx3:NM_198052:exon4:c.A771G:p.E257E"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.999989	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr5	120609786	12A2p6	cell line	sgMsh2	120609786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	30	0	0	NA	exonic	Rita1	nonsynonymous SNV	"Rita1:NM_029096:exon3:c.A446G:p.H149R,Rita1:NM_133908:exon4:c.A446G:p.H149R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9302904	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	120769968	12A2p6	cell line	sgMsh2	120769968	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	43	0	0	NA	exonic	Oas3	synonymous SNV	Oas3:NM_145226:exon5:c.C906T:p.D302D	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9745283	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr5	121384041	12A2p6	cell line	sgMsh2	121384041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	174	0	0	NA	exonic	Trafd1	nonsynonymous SNV	"Trafd1:NM_001163470:exon2:c.T46C:p.C16R,Trafd1:NM_001359947:exon2:c.T46C:p.C16R,Trafd1:NM_172275:exon2:c.T46C:p.C16R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.8712535	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	121434925	12A2p6	cell line	sgMsh2	121434925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	220	0	0	NA	exonic	Naa25	synonymous SNV	Naa25:NM_172722:exon18:c.T2106C:p.S702S	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	1.67E-08	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr5	121610131	12A2p6	cell line	sgMsh2	121610131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	193	0	0	NA	exonic	Acad12	nonsynonymous SNV	Acad12:NM_178799:exon3:c.A223C:p.K75Q	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.915777641	1	0.9999767	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	121817963	12A2p6	cell line	sgMsh2	121817963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	52	0	0	NA	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon8:c.A1425G:p.P475P,Sh2b3:NM_008507:exon8:c.A1455G:p.P485P,Sh2b3:NM_001306126:exon9:c.A1455G:p.P485P,Sh2b3:NM_001306127:exon9:c.A1455G:p.P485P"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.5949304	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	121884787	12A2p6	cell line	sgMsh2	121884787	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	91	0	0	NA	exonic	Cux2	synonymous SNV	"Cux2:NM_001312908:exon8:c.G408A:p.R136R,Cux2:NM_007804:exon8:c.G408A:p.R136R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9544608	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr5	122102770	12A2p6	cell line	sgMsh2	122102770	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	95	0	0	NA	exonic	Myl2	synonymous SNV	"Myl2:NM_001384326:exon3:c.A168G:p.L56L,Myl2:NM_010861:exon3:c.A168G:p.L56L,Myl2:NM_001384330:exon5:c.A111G:p.L37L,Myl2:NM_001384327:exon6:c.A111G:p.L37L,Myl2:NM_001384331:exon6:c.A111G:p.L37L,Myl2:NM_001384329:exon7:c.A111G:p.L37L,Myl2:NM_001384328:exon8:c.A111G:p.L37L"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5364186	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	122334415	12A2p6	cell line	sgMsh2	122334415	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	148	0	0	NA	exonic	Rad9b	nonsynonymous SNV	"Rad9b:NM_001382853:exon7:c.C682G:p.L228V,Rad9b:NM_144912:exon7:c.C682G:p.L228V"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9999843	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	122439459	12A2p6	cell line	sgMsh2	122439459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	81	0	0	NA	exonic	Anapc7	nonsynonymous SNV	Anapc7:NM_019805:exon8:c.T1076C:p.I359T	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.5935954	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	122559719	12A2p6	cell line	sgMsh2	122559719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	279	0	0	NA	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon15:c.A1475G:p.H492R,Ift81:NM_001358917:exon16:c.A1694G:p.H565R,Ift81:NM_001358918:exon16:c.A1526G:p.H509R,Ift81:NM_009879:exon16:c.A1694G:p.H565R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	1.13E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	122883335	12A2p6	cell line	sgMsh2	122883335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	88	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001378864:exon3:c.A407G:p.H136R,Kdm2b:NM_001378865:exon3:c.A407G:p.H136R,Kdm2b:NM_013910:exon3:c.A407G:p.H136R,Kdm2b:NM_001003953:exon14:c.A2006G:p.H669R,Kdm2b:NM_001378863:exon14:c.A1988G:p.H663R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8764482	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123029094	12A2p6	cell line	sgMsh2	123029094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	63	0	0	NA	exonic	Orai1	nonsynonymous SNV	Orai1:NM_175423:exon2:c.A329G:p.Q110R	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.9948479	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123182676	12A2p6	cell line	sgMsh2	123182676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	172	0	0	NA	exonic	Hpd	nonsynonymous SNV	Hpd:NM_008277:exon1:c.A1C:p.M1L	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.960665	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123547016	12A2p6	cell line	sgMsh2	123547016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	115	0	0	NA	exonic	Vps33a	nonsynonymous SNV	"Vps33a:NM_001359513:exon8:c.T1088C:p.I363T,Vps33a:NM_029929:exon8:c.T1088C:p.I363T"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9915696	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123646269	12A2p6	cell line	sgMsh2	123646269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	68	0	0	NA	exonic	Clip1	synonymous SNV	"Clip1:NM_001291229:exon5:c.T816C:p.A272A,Clip1:NM_001347468:exon5:c.T816C:p.A272A,Clip1:NM_001359220:exon5:c.T816C:p.A272A,Clip1:NM_001359221:exon5:c.T816C:p.A272A,Clip1:NM_001359222:exon5:c.T816C:p.A272A,Clip1:NM_001359223:exon5:c.T816C:p.A272A,Clip1:NM_001359224:exon5:c.T816C:p.A272A,Clip1:NM_019765:exon5:c.T816C:p.A272A"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9965567	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	123729278	12A2p6	cell line	sgMsh2	123729278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	201	0	0	NA	exonic	Rsrc2	nonsynonymous SNV	"Rsrc2:NM_001005525:exon10:c.A1204G:p.N402D,Rsrc2:NM_001359864:exon10:c.A1201G:p.N401D,Rsrc2:NM_025438:exon11:c.A1030G:p.N344D,Rsrc2:NM_001359861:exon12:c.A1030G:p.N344D,Rsrc2:NM_001359866:exon12:c.A1027G:p.N343D,Rsrc2:NM_001359860:exon13:c.A1030G:p.N344D,Rsrc2:NM_001359865:exon13:c.A1027G:p.N343D"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999998	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	207	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9877093	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	72	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9975066	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	123802402	12A2p6	cell line	sgMsh2	123802402	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	34	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon48:c.G5062A:p.A1688T	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9486092	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.104	74	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.8108559	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124121919	12A2p6	cell line	sgMsh2	124121919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	66	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon23:c.A3509G:p.D1170G,Pitpnm2:NM_011256:exon23:c.A3347G:p.D1116G"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.8439033	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124123998	12A2p6	cell line	sgMsh2	124123998	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	57	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon18:c.C2779T:p.H927Y,Pitpnm2:NM_011256:exon18:c.C2617T:p.H873Y"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.9901905	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124136374	12A2p6	cell line	sgMsh2	124136374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	50	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon6:c.A671G:p.H224R,Pitpnm2:NM_011256:exon7:c.A671G:p.H224R"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.732622113	1	0.4994923	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124410263	12A2p6	cell line	sgMsh2	124410263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	223	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon4:c.T354G:p.T118T,Sbno1:NM_001359978:exon4:c.T354G:p.T118T,Sbno1:NM_001359979:exon4:c.T351G:p.T117T"	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.540073993	2	0.9993953	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	124646720	12A2p6	cell line	sgMsh2	124646720	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	63	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon9:c.G942C:p.M314I	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9948479	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124800930	12A2p6	cell line	sgMsh2	124800930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	187	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon47:c.A8078G:p.K2693R	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	124832622	12A2p6	cell line	sgMsh2	124832622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	216	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon77:c.C13475T:p.A4492V	5qF	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	2.27E-08	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	125011324	12A2p6	cell line	sgMsh2	125011324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	102	0	0	NA	exonic	Rflna	nonsynonymous SNV	Rflna:NM_028443:exon3:c.T334C:p.F112L	5qG1.1	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5331683	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	125048197	12A2p6	cell line	sgMsh2	125048197	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.333	12	0	0	NA	exonic	Ncor2	synonymous SNV	"Ncor2:NM_001253905:exon17:c.G1890A:p.E630E,Ncor2:NM_001253904:exon21:c.G2022A:p.E674E,Ncor2:NM_011424:exon21:c.G2547A:p.E849E"	5qG1.1	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.7487509	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr5	125622767	12A2p6	cell line	sgMsh2	125622767	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	82	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon2:c.T368A:p.L123H	5qG1.1	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9577577	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	127359899	12A2p6	cell line	sgMsh2	127359899	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	157	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon2:c.C451G:p.H151D	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9957277	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	127563252	12A2p6	cell line	sgMsh2	127563252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	84	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon9:c.A2486G:p.D829G	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.8137457	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	127609034	12A2p6	cell line	sgMsh2	127609034	G	T	SNV	Mutect2;Strelka2	2	0.065	69	0	0	NA	exonic	Slc15a4	synonymous SNV	Slc15a4:NM_133895:exon2:c.C583A:p.R195R	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.305259214	3	0.9658979	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr5	127609044	12A2p6	cell line	sgMsh2	127609044	T	C	SNV	Mutect2;Strelka2	2	0.067	66	0	0	NA	exonic	Slc15a4	synonymous SNV	Slc15a4:NM_133895:exon2:c.A573G:p.P191P	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9495771	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	127650704	12A2p6	cell line	sgMsh2	127650704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	48	0	0	NA	exonic	Glt1d1	nonsynonymous SNV	Glt1d1:NM_177005:exon3:c.T239C:p.V80A	5qG1.2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9828611	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	128601265	12A2p6	cell line	sgMsh2	128601265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	11	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A48G:p.I16M	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.7313476	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	128601785	12A2p6	cell line	sgMsh2	128601785	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.312	22	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.C568T:p.R190C	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.8742441	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	128601801	12A2p6	cell line	sgMsh2	128601801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	27	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A584G:p.N195S	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9127268	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	128602175	12A2p6	cell line	sgMsh2	128602175	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.106	76	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.T958G:p.F320V	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.8507171	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	128986369	12A2p6	cell line	sgMsh2	128986369	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	254	0	0	NA	exonic	Stx2	nonsynonymous SNV	"Stx2:NM_001286033:exon10:c.C851T:p.A284V,Stx2:NM_001286034:exon10:c.C764T:p.A255V"	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9998369	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	129171839	12A2p6	cell line	sgMsh2	129171839	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	114	0	0	NA	exonic	Adgrd1	synonymous SNV	"Adgrd1:NM_001347486:exon15:c.T1572C:p.C524C,Adgrd1:NM_001081342:exon16:c.T1668C:p.C556C"	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.9854828	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	129873779	12A2p6	cell line	sgMsh2	129873779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	120	0	0	NA	exonic	Phkg1	nonsynonymous SNV	Phkg1:NM_011079:exon3:c.T152C:p.I51T	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9951469	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	129902440	12A2p6	cell line	sgMsh2	129902440	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	76	0	0	NA	exonic	Zbed5	nonsynonymous SNV	"Zbed5:NM_183088:exon4:c.C1229T:p.T410M,Zbed5:NM_001359408:exon5:c.C1166T:p.T389M"	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.27708144	3	0.989622	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	129908839	12A2p6	cell line	sgMsh2	129908839	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.429	7	0	0	NA	exonic	Nupr1l	nonsynonymous SNV	"Nupr1l:NM_001359308:exon1:c.A248C:p.N83T,Nupr1l:NM_026916:exon1:c.A248C:p.N83T"	5qG1.3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.6490452	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	98	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9996953	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	134243910	12A2p6	cell line	sgMsh2	134243910	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	28	0	0	NA	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080749:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359066:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359067:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080747:exon26:c.A2404C:p.S802R,Gtf2i:NM_001359063:exon26:c.A2410C:p.S804R,Gtf2i:NM_001359065:exon26:c.A2404C:p.S802R,Gtf2i:NM_010365:exon26:c.A2410C:p.S804R,Gtf2i:NM_001080746:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359062:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359064:exon27:c.A2410C:p.S804R"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.9189909	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	134597889	12A2p6	cell line	sgMsh2	134597889	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	137	0	0	NA	exonic	Rfc2	nonsynonymous SNV	Rfc2:NM_020022:exon11:c.A980G:p.N327S	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9328632	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	135064529	12A2p6	cell line	sgMsh2	135064529	-	T	Insertion	Mutect2;Vardict	2	0.184	49	0	0	NA	exonic	Bud23;Dnajc30	frameshift insertion	"Bud23:NM_001363325:exon1:c.14dupA:p.T6Dfs*6,Dnajc30:NM_025362:exon1:c.280dupT:p.L94Ffs*10"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.864118389	NA	NA	TCT	frameshift	NA	NA	NA	1
M6_p20	chr5	135217467	12A2p6	cell line	sgMsh2	135217467	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	49	0	0	NA	exonic	Baz1b	nonsynonymous SNV	Baz1b:NM_011714:exon7:c.A1769C:p.N590T	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.8066061	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	135734871	12A2p6	cell line	sgMsh2	135734871	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.192	132	0	0	NA	exonic	Por	nonsynonymous SNV	Por:NM_008898:exon16:c.T1951G:p.F651V	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9988434	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	135734873	12A2p6	cell line	sgMsh2	135734873	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.192	132	0	0	NA	exonic	Por	synonymous SNV	Por:NM_008898:exon16:c.T1953C:p.F651F	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9988434	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	168	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9976066	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	136091264	12A2p6	cell line	sgMsh2	136091264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	63	0	0	NA	exonic	Rasa4	nonsynonymous SNV	"Rasa4:NM_001039103:exon3:c.T193C:p.F65L,Rasa4:NM_133914:exon3:c.T193C:p.F65L"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9948479	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	136224301	12A2p6	cell line	sgMsh2	136224301	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	52	0	0	NA	exonic	Sh2b2	nonsynonymous SNV	"Sh2b2:NM_001302938:exon6:c.A1016T:p.E339V,Sh2b2:NM_001302939:exon6:c.A1016T:p.E339V,Sh2b2:NM_018825:exon6:c.A1016T:p.E339V"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.925170232	1	0.9588084	CTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M6_p20	chr5	137555077	12A2p6	cell line	sgMsh2	137555077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	125	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon4:c.T350C:p.V117A	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5314109	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	137580217	12A2p6	cell line	sgMsh2	137580217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	157	0	0	NA	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon10:c.G1306A:p.A436T,Tfr2:NM_001289511:exon11:c.G1306A:p.A436T,Tfr2:NM_001359206:exon11:c.G1306A:p.A436T,Tfr2:NM_001289509:exon12:c.G1306A:p.A436T,Tfr2:NM_015799:exon12:c.G1306A:p.A436T"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999974	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	64	0	0	NA	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.8852934	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	137857515	12A2p6	cell line	sgMsh2	137857515	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	125	0	0	NA	exonic	Pilrb1	frameshift deletion	Pilrb1:NM_133209:exon2:c.113delA:p.N38Mfs*36	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	158	0	0	NA	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.8603086	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	138183578	12A2p6	cell line	sgMsh2	138183578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	36	0	0	NA	exonic	Taf6	synonymous SNV	"Taf6:NM_001356600:exon4:c.C387T:p.V129V,Taf6:NM_001356601:exon4:c.C387T:p.V129V,Taf6:NM_001356602:exon4:c.C387T:p.V129V,Taf6:NM_009315:exon4:c.C387T:p.V129V"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9434689	AGA	synonymous	NA	NA	NA	NA
M6_p20	chr5	138646905	12A2p6	cell line	sgMsh2	138646905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	69	0	0	NA	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1051G:p.T351A	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9968235	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	138647722	12A2p6	cell line	sgMsh2	138647722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	122	0	0	NA	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1868G:p.Y623C	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9995495	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	138755649	12A2p6	cell line	sgMsh2	138755649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	54	0	0	NA	exonic	Fam20c	nonsynonymous SNV	Fam20c:NM_030565:exon1:c.T14C:p.L5P	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.6002668	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	139050736	12A2p6	cell line	sgMsh2	139050736	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	56	0	0	NA	exonic	Prkar1b	frameshift deletion	"Prkar1b:NM_001359101:exon6:c.258delC:p.R87Efs*4,Prkar1b:NM_001253890:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359097:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359098:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359099:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_001359100:exon7:c.630delC:p.R211Efs*4,Prkar1b:NM_008923:exon7:c.630delC:p.R211Efs*4"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M6_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	212	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	3.10E-08	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	139263481	12A2p6	cell line	sgMsh2	139263481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	104	0	0	NA	exonic	Get4	nonsynonymous SNV	"Get4:NM_001163316:exon4:c.A160G:p.N54D,Get4:NM_001359238:exon4:c.A316G:p.N106D,Get4:NM_026269:exon4:c.A319G:p.N107D"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998125	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	139392809	12A2p6	cell line	sgMsh2	139392809	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	201	0	0	NA	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T365C:p.L122P,Gpr146:NM_001362206:exon2:c.T365C:p.L122P,Gpr146:NM_030258:exon2:c.T365C:p.L122P"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9997064	CTG	nonsynonymous	CACTG	11	CACTGCACTGC	NA
M6_p20	chr5	139392815	12A2p6	cell line	sgMsh2	139392815	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	203	0	0	NA	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T371G:p.L124R,Gpr146:NM_001362206:exon2:c.T371G:p.L124R,Gpr146:NM_030258:exon2:c.T371G:p.L124R"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.582340654	2	0.9999155	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	139716647	12A2p6	cell line	sgMsh2	139716647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	144	0	0	NA	exonic	Micall2	synonymous SNV	Micall2:NM_174850:exon6:c.T840C:p.N280N	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9990277	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr5	139806938	12A2p6	cell line	sgMsh2	139806938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	131	0	0	NA	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon6:c.A790G:p.I264V,Tmem184a:NM_001161548:exon7:c.A862G:p.I288V"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.783538	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	143	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.474325855	2	0.8105002	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr5	140634832	12A2p6	cell line	sgMsh2	140634832	G	A	SNV	Mutect2;Vardict	2	0.136	31	0	0	NA	exonic	Ttyh3	nonsynonymous SNV	"Ttyh3:NM_001308040:exon5:c.C649T:p.L217F,Ttyh3:NM_175274:exon5:c.C649T:p.L217F"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.6715911	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	140665374	12A2p6	cell line	sgMsh2	140665374	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	64	0	0	NA	exonic	Iqce	nonsynonymous SNV	"Iqce:NM_001347517:exon23:c.C2278T:p.P760S,Iqce:NM_028833:exon23:c.C2329T:p.P777S"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9952465	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	141953112	12A2p6	cell line	sgMsh2	141953112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	52	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon9:c.T1289C:p.L430S	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9866271	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	142161926	12A2p6	cell line	sgMsh2	142161926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	76	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon37:c.A5312G:p.K1771R	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9981949	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	142451467	12A2p6	cell line	sgMsh2	142451467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	113	0	0	NA	exonic	Foxk1	nonsynonymous SNV	Foxk1:NM_199068:exon5:c.A1037G:p.N346S	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999095	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	142472335	12A2p6	cell line	sgMsh2	142472335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	72	0	0	NA	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon10:c.A1262C:p.D421A	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9975066	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	143202035	12A2p6	cell line	sgMsh2	143202035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	119	0	0	NA	exonic	Spdye4b	nonsynonymous SNV	"Spdye4b:NM_001384193:exon6:c.T473C:p.M158T,Spdye4b:NM_177880:exon6:c.T443C:p.M148T"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999443	ATG	nonsynonymous	GGA	9	GGAGGAGGA	NA
M6_p20	chr5	143254581	12A2p6	cell line	sgMsh2	143254581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	32	0	0	NA	exonic	Zfp316	nonsynonymous SNV	Zfp316:NM_017467:exon7:c.A1682G:p.D561G	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.8947769	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	143379386	12A2p6	cell line	sgMsh2	143379386	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.143	42	0	0	NA	exonic	Grid2ip	nonsynonymous SNV	"Grid2ip:NM_001347529:exon8:c.A1009G:p.S337G,Grid2ip:NM_133355:exon8:c.A988G:p.S330G,Grid2ip:NM_001159321:exon9:c.A1525G:p.S509G"	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.6774388	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	144001449	12A2p6	cell line	sgMsh2	144001449	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	186	0	0	NA	exonic	Ccz1	synonymous SNV	Ccz1:NM_177682:exon8:c.A702T:p.L234L	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9823487	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr5	144553422	12A2p6	cell line	sgMsh2	144553422	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	102	0	0	NA	exonic	Nptx2	synonymous SNV	Nptx2:NM_016789:exon3:c.A660T:p.P220P	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.9890948	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr5	144834242	12A2p6	cell line	sgMsh2	144834242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	214	0	0	NA	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon55:c.A8393G:p.Y2798C	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.929866528	1	0.9999971	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	144857455	12A2p6	cell line	sgMsh2	144857455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	225	0	0	NA	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon70:c.A11135G:p.N3712S	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9998411	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145044767	12A2p6	cell line	sgMsh2	145044767	T	-	Deletion	Mutect2;Vardict	2	0.103	119	0	0	NA	exonic	1700018F24Rik	frameshift deletion	1700018F24Rik:NM_027069:exon4:c.411delT:p.F139Lfs*8	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.483718446	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr5	145096078	12A2p6	cell line	sgMsh2	145096078	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.154	59	0	0	NA	exonic	Arpc1a	nonsynonymous SNV	Arpc1a:NM_019767:exon4:c.C196T:p.R66C	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.000806947	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	101	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.636964	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	98	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9486861	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145187147	12A2p6	cell line	sgMsh2	145187147	T	C	SNV	Mutect2;Vardict	2	0.096	87	0	0	NA	exonic	Atp5j2	nonsynonymous SNV	Atp5j2:NM_020582:exon2:c.A100G:p.I34V	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5932916	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145779670	12A2p6	cell line	sgMsh2	145779670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	440	0	0	NA	exonic	Cyp3a44	nonsynonymous SNV	Cyp3a44:NM_177380:exon11:c.T1109C:p.I370T	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	145865954	12A2p6	cell line	sgMsh2	145865954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	89	0	0	NA	exonic	Cyp3a11	nonsynonymous SNV	Cyp3a11:NM_007818:exon8:c.A728G:p.K243R	5qG2	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.999369	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	275	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9995231	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	146955155	12A2p6	cell line	sgMsh2	146955155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	194	0	0	NA	exonic	Gtf3a	nonsynonymous SNV	Gtf3a:NM_025652:exon8:c.A899C:p.D300A	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	149453408	12A2p6	cell line	sgMsh2	149453408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	171	0	0	NA	exonic	Tex26	synonymous SNV	"Tex26:NM_001310765:exon2:c.A6G:p.V2V,Tex26:NM_001310763:exon3:c.A258G:p.V86V,Tex26:NM_001310764:exon3:c.A6G:p.V2V,Tex26:NM_029464:exon3:c.A261G:p.V87V"	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999992	TAA	synonymous	A	5	AAAAA	NA
M6_p20	chr5	150067253	12A2p6	cell line	sgMsh2	150067253	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.148	38	0	0	NA	exonic	Rxfp2	nonsynonymous SNV	"Rxfp2:NM_001289564:exon15:c.T1406C:p.V469A,Rxfp2:NM_001289566:exon15:c.T1448C:p.V483A,Rxfp2:NM_080468:exon16:c.T1478C:p.V493A"	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.5946564	GTG	nonsynonymous	TGC	11	TGCTGCTGCTG	NA
M6_p20	chr5	150378979	12A2p6	cell line	sgMsh2	150378979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	55	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon15:c.A1650G:p.I550M	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	1	1	0.9902016	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	150554424	12A2p6	cell line	sgMsh2	150554424	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	108	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon18:c.A8009G:p.Q2670R,Brca2:NM_009765:exon18:c.A8009G:p.Q2670R"	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	9.65E-08	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	150988521	12A2p6	cell line	sgMsh2	150988521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	132	0	0	NA	exonic	Kl	synonymous SNV	Kl:NM_013823:exon4:c.T1734C:p.S578S	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.0980597	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr5	151645654	12A2p6	cell line	sgMsh2	151645654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	138	0	0	NA	exonic	Rfc3	nonsynonymous SNV	Rfc3:NM_027009:exon5:c.A437T:p.H146L	5qG3	chr5-95270364-151647482	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.8968531	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.472	83	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M6_p20	chr6	3532184	12A2p6	cell line	sgMsh2	3532184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	265	0	0	NA	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon10:c.C686A:p.T229N,Vps50:NM_001167751:exon10:c.C686A:p.T229N,Vps50:NM_024260:exon10:c.C686A:p.T229N"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.591733245	2	0.9999951	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	4532747	12A2p6	cell line	sgMsh2	4532747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	370	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon39:c.A2371G:p.M791V	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.925170232	1	1.51E-09	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	4539480	12A2p6	cell line	sgMsh2	4539480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	142	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon51:c.A3747G:p.E1249E	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.521288811	2	0.9812207	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	195	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.338133283	3	0.9997423	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	209	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.375703647	3	0.9973962	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M6_p20	chr6	4624427	12A2p6	cell line	sgMsh2	4624427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	211	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.A370G:p.I124V,Casd1:NM_001379144:exon6:c.A835G:p.I279V,Casd1:NM_001379143:exon9:c.A1219G:p.I407V,Casd1:NM_145398:exon9:c.A1219G:p.I407V"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.375703647	3	0.9975557	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	357	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.239511075	3	1.00E-09	TGC	synonymous	NA	NA	NA	NA
M6_p20	chr6	4905506	12A2p6	cell line	sgMsh2	4905506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	93	0	0	NA	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon2:c.G60A:p.R20R,Ppp1r9a:NM_181595:exon2:c.G60A:p.R20R"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.709140635	2	0.6957097	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr6	5168486	12A2p6	cell line	sgMsh2	5168486	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	140	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon9:c.T920G:p.I307S	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.281777736	3	0.9998358	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	25	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.898846	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	146	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.333436987	3	0.9981232	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	5230455	12A2p6	cell line	sgMsh2	5230455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	165	0	0	NA	exonic	Pon3	synonymous SNV	"Pon3:NM_001363812:exon8:c.C633T:p.H211H,Pon3:NM_173006:exon8:c.C852T:p.H284H"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.845333207	1	0.9958564	GGT	synonymous	NA	NA	NA	NA
M6_p20	chr6	5972208	12A2p6	cell line	sgMsh2	5972208	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	77	0	0	NA	exonic	Dync1i1	nonsynonymous SNV	"Dync1i1:NM_001191023:exon13:c.A1499C:p.K500T,Dync1i1:NM_001191025:exon13:c.A1448C:p.K483T,Dync1i1:NM_001191027:exon13:c.A1415C:p.K472T,Dync1i1:NM_001191026:exon14:c.A1475C:p.K492T,Dync1i1:NM_010063:exon14:c.A1508C:p.K503T"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	1	0.670374	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	6113973	12A2p6	cell line	sgMsh2	6113973	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	84	0	0	NA	exonic	Slc25a13	nonsynonymous SNV	"Slc25a13:NM_001177572:exon9:c.A898C:p.M300L,Slc25a13:NM_015829:exon9:c.A898C:p.M300L"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.615214723	2	0.9579766	ATT	nonsynonymous	TTCC	9	TTCCTTCCT	NA
M6_p20	chr6	6152512	12A2p6	cell line	sgMsh2	6152512	A	-	Deletion	Mutect2;Vardict	2	0.216	55	0	0	NA	exonic	Slc25a13	frameshift deletion	"Slc25a13:NM_001177572:exon4:c.224delT:p.F75Sfs*4,Slc25a13:NM_015829:exon4:c.224delT:p.F75Sfs*4"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr6	6878375	12A2p6	cell line	sgMsh2	6878375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	36	0	0	NA	exonic	Dlx5	synonymous SNV	Dlx5:NM_010056:exon3:c.A654G:p.P218P	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9559584	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.11	169	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.516592515	2	0.986409	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M6_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	172	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M6_p20	chr6	11933617	12A2p6	cell line	sgMsh2	11933617	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	178	0	0	NA	exonic	Phf14	synonymous SNV	"Phf14:NM_001168382:exon3:c.T477C:p.P159P,Phf14:NM_029404:exon3:c.T477C:p.P159P"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.342829578	3	0.9992311	CTA	synonymous	ACC	20	ACCACCACTACCACCACCAC	NA
M6_p20	chr6	12320949	12A2p6	cell line	sgMsh2	12320949	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	95	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon25:c.G4726T:p.A1576S	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9996116	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	92	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.563555471	2	0.979867	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M6_p20	chr6	12555638	12A2p6	cell line	sgMsh2	12555638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	113	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon2:c.T246C:p.T82T	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999095	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	13185194	12A2p6	cell line	sgMsh2	13185194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	107	0	0	NA	exonic	Vwde	nonsynonymous SNV	Vwde:NM_001368871:exon13:c.T2768C:p.I923T	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.793673955	1	9.89E-08	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	340	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.51189622	2	0.999351	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	13591542	12A2p6	cell line	sgMsh2	13591542	G	T	SNV	Mutect2;Vardict	2	0.117	37	0	0	NA	exonic	Tmem168	nonsynonymous SNV	Tmem168:NM_028990:exon4:c.C1274A:p.P425H	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.549466584	2	0.09732407	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	15799800	12A2p6	cell line	sgMsh2	15799800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	336	0	0	NA	exonic	Mdfic	nonsynonymous SNV	Mdfic:NM_175088:exon5:c.T679C:p.C227R	6qA1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.572948062	2	0.9999997	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	17097518	12A2p6	cell line	sgMsh2	17097518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	144	0	0	NA	exonic	Tes	synonymous SNV	Tes:NM_207176:exon4:c.T624C:p.P208P	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.878207276	1	0.9981597	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	324	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.295866622	3	5.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	17492124	12A2p6	cell line	sgMsh2	17492124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	150	0	0	NA	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon3:c.T884C:p.L295P	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.432059195	3	0.710116	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.182	205	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	0.9993753	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.187	212	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.878207276	1	0.9998981	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	17665325	12A2p6	cell line	sgMsh2	17665325	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	371	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon10:c.T751G:p.S251A	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.253599962	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	420	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.87351098	1	2.80E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.892	292	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	4	1	1	1.05E-09	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M6_p20	chr6	22237622	12A2p6	cell line	sgMsh2	22237622	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	148	0	0	NA	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon21:c.A2736T:p.E912D	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999947	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	22254572	12A2p6	cell line	sgMsh2	22254572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	234	0	0	NA	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon22:c.A2963G:p.H988R	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	2	0.9984731	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	23587545	12A2p6	cell line	sgMsh2	23587545	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	53	0	0	NA	exonic	Cadps2	synonymous SNV	"Cadps2:NM_001252105:exon5:c.C945T:p.S315S,Cadps2:NM_001252106:exon5:c.C945T:p.S315S,Cadps2:NM_001252107:exon5:c.C945T:p.S315S,Cadps2:NM_001252108:exon5:c.C945T:p.S315S,Cadps2:NM_001252110:exon5:c.C945T:p.S315S,Cadps2:NM_153163:exon5:c.C945T:p.S315S"	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9884997	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	203	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.361614761	3	0.9989258	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	23969343	12A2p6	cell line	sgMsh2	23969343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	229	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T718C:p.S240P	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	1	0.9701306	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	24168044	12A2p6	cell line	sgMsh2	24168044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	98	0	0	NA	exonic	Slc13a1	synonymous SNV	Slc13a1:NM_019481:exon1:c.T21C:p.A7A	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.981525779	1	0.9994613	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	24450823	12A2p6	cell line	sgMsh2	24450823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	33	0	0	NA	exonic	Iqub	synonymous SNV	Iqub:NM_172535:exon11:c.T1776C:p.D592D	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9445113	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	24598008	12A2p6	cell line	sgMsh2	24598008	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	29	0	0	NA	exonic	Lmod2	synonymous SNV	Lmod2:NM_053098:exon1:c.T126G:p.P42P	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.892296163	1	0.8210137	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	24756271	12A2p6	cell line	sgMsh2	24756271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	118	0	0	NA	exonic	Hyal4	nonsynonymous SNV	Hyal4:NM_029848:exon3:c.T487C:p.Y163H	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.958044301	1	0.999713	CTA	nonsynonymous	ACAG	9	ACAGACAGA	NA
M6_p20	chr6	24763855	12A2p6	cell line	sgMsh2	24763855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	458	0	0	NA	exonic	Hyal4	synonymous SNV	Hyal4:NM_029848:exon4:c.T1014C:p.V338V	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	2	2.40E-08	TTT	synonymous	TTG	8	TTGTTGTT	NA
M6_p20	chr6	24765781	12A2p6	cell line	sgMsh2	24765781	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	272	0	0	NA	exonic	Hyal4	nonsynonymous SNV	Hyal4:NM_029848:exon5:c.G1133A:p.R378H	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.479022151	2	0.9333191	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	24796789	12A2p6	cell line	sgMsh2	24796789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	180	0	0	NA	exonic	Spam1	synonymous SNV	"Spam1:NM_009241:exon2:c.T738C:p.D246D,Spam1:NM_001079875:exon3:c.T738C:p.D246D"	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.605822132	2	0.9994796	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr6	25753197	12A2p6	cell line	sgMsh2	25753197	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	162	0	0	NA	exonic	Pot1a	nonsynonymous SNV	Pot1a:NM_133931:exon13:c.A1339C:p.N447H	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.746710999	1	6.28E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr6	27363247	12A2p6	cell line	sgMsh2	27363247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	243	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2268C:p.S756S,Grm8:NM_001361125:exon9:c.T2268C:p.S756S,Grm8:NM_008174:exon9:c.T2268C:p.S756S"	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.901688754	1	0.9999955	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	27363252	12A2p6	cell line	sgMsh2	27363252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	244	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.T2263C:p.Y755H,Grm8:NM_001361125:exon9:c.T2263C:p.Y755H,Grm8:NM_008174:exon9:c.T2263C:p.Y755H"	6qA3.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	1	0.9999463	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	29155080	12A2p6	cell line	sgMsh2	29155080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	275	0	0	NA	exonic	Rbm28	synonymous SNV	Rbm28:NM_133925:exon7:c.T723C:p.D241D	6qA3.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.366311056	3	0.999878	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	29450863	12A2p6	cell line	sgMsh2	29450863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	212	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon26:c.T4509C:p.T1503T,Flnc:NM_001311074:exon26:c.T4509C:p.T1503T"	6qA3.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.417970308	3	0.9351683	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.15	61	0	0	NA	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.704444339	2	0.6394434	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	29757358	12A2p6	cell line	sgMsh2	29757358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	73	0	0	NA	exonic	Smo	nonsynonymous SNV	Smo:NM_176996:exon8:c.T1471C:p.Y491H	6qA3.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	2	0.869041	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	30640606	12A2p6	cell line	sgMsh2	30640606	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	309	0	0	NA	exonic	Cpa1	synonymous SNV	Cpa1:NM_025350:exon3:c.T246C:p.H82H	6qA3.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.943955414	1	3.73E-09	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr6	34357477	12A2p6	cell line	sgMsh2	34357477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	176	0	0	NA	exonic	Akr1b8	nonsynonymous SNV	Akr1b8:NM_008012:exon3:c.T251C:p.F84S	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.850029502	1	0.9977551	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	34876540	12A2p6	cell line	sgMsh2	34876540	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	78	0	0	NA	exonic	Cyren	nonsynonymous SNV	"Cyren:NM_001135611:exon2:c.A145G:p.R49G,Cyren:NM_001347101:exon2:c.A145G:p.R49G,Cyren:NM_199145:exon2:c.A145G:p.R49G"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.432059195	3	0.5355917	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	156	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.385096239	3	0.9762823	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	35271698	12A2p6	cell line	sgMsh2	35271698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	88	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon14:c.C1513T:p.L505L	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9993158	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr6	38036747	12A2p6	cell line	sgMsh2	38036747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	210	0	0	NA	exonic	Svopl	nonsynonymous SNV	Svopl:NM_177200:exon4:c.A239C:p.Q80P	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.497807333	2	0.9753041	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	244	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.338133283	3	0.9999727	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	242	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.474325855	2	0.8801613	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Vardict	2	0.094	65	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.441451786	2	0.5546751	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M6_p20	chr6	38818458	12A2p6	cell line	sgMsh2	38818458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	162	0	0	NA	exonic	Hipk2	nonsynonymous SNV	"Hipk2:NM_001136065:exon2:c.A854G:p.K285R,Hipk2:NM_001294143:exon2:c.A875G:p.K292R,Hipk2:NM_001294144:exon2:c.A875G:p.K292R,Hipk2:NM_010433:exon2:c.A875G:p.K292R"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.535377698	2	0.9949116	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	38982203	12A2p6	cell line	sgMsh2	38982203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	447	0	0	NA	exonic	Tbxas1	nonsynonymous SNV	Tbxas1:NM_011539:exon4:c.T319C:p.F107L	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.633999905	2	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	39401410	12A2p6	cell line	sgMsh2	39401410	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	72	0	0	NA	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon5:c.C594A:p.A198A,Mkrn1:NM_018810:exon5:c.C786A:p.A262A"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.497807333	2	0.8425867	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr6	39405918	12A2p6	cell line	sgMsh2	39405918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	279	0	0	NA	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon3:c.T165C:p.A55A,Mkrn1:NM_018810:exon3:c.T357C:p.A119A"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.99091837	1	1.29E-09	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	39614154	12A2p6	cell line	sgMsh2	39614154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	85	0	0	NA	exonic	Braf	synonymous SNV	Braf:NM_139294:exon21:c.A2370G:p.T790T	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.845333207	1	0.948029	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	39639598	12A2p6	cell line	sgMsh2	39639598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	258	0	0	NA	exonic	Braf	nonsynonymous SNV	Braf:NM_139294:exon16:c.G1797T:p.Q599H	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.807762842	1	0.9956222	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	40245585	12A2p6	cell line	sgMsh2	40245585	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	283	0	0	NA	exonic	Tmem178b	nonsynonymous SNV	"Tmem178b:NM_001004182:exon3:c.A233G:p.Y78C,Tmem178b:NM_001360978:exon4:c.A698G:p.Y233C"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.262992553	3	2.52E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	237	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.366311056	3	0.9995352	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	243	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.356918465	3	0.9998406	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	40581839	12A2p6	cell line	sgMsh2	40581839	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	209	0	0	NA	exonic	Clec5a	synonymous SNV	"Clec5a:NM_021364:exon4:c.A237G:p.Q79Q,Clec5a:NM_001038604:exon5:c.A312G:p.Q104Q"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.774888773	1	0.09417689	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	40612821	12A2p6	cell line	sgMsh2	40612821	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	63	0	0	NA	exonic	Tas2r138	frameshift deletion	Tas2r138:NM_001001451:exon1:c.490delT:p.C164Afs*12	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr6	40655285	12A2p6	cell line	sgMsh2	40655285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	178	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon6:c.T552C:p.P184P,Mgam:NM_001368875:exon6:c.T552C:p.P184P"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	2	0.9925499	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	185	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.35222217	3	0.9989136	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	40895432	12A2p6	cell line	sgMsh2	40895432	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	158	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon6:c.C656A:p.A219D	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.71383693	2	0.7835297	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	40925978	12A2p6	cell line	sgMsh2	40925978	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.194	182	0	0	NA	exonic	1700074P13Rik	frameshift insertion	"1700074P13Rik:NM_001361930:exon4:c.458dupA:p.N153Kfs*2,1700074P13Rik:NM_028550:exon5:c.458dupA:p.N153Kfs*2"	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.911081345	NA	NA	GGT	frameshift	T	5	TTTTT	1
M6_p20	chr6	41374996	12A2p6	cell line	sgMsh2	41374996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	834	0	0	NA	exonic	Prss3	nonsynonymous SNV	Prss3:NM_011645:exon3:c.T332G:p.L111R	6qB1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.864118389	1	1.00E-09	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	41621271	12A2p6	cell line	sgMsh2	41621271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	153	0	0	NA	exonic	Trpv6	synonymous SNV	Trpv6:NM_022413:exon15:c.T2101C:p.L701L	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.568251767	2	0.9987533	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	41657965	12A2p6	cell line	sgMsh2	41657965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	217	0	0	NA	exonic	Trpv5	nonsynonymous SNV	Trpv5:NM_001007572:exon13:c.A1576G:p.T526A	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	1	0.8458186	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.107	171	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.502503628	2	0.9683421	ACG	synonymous	NA	NA	NA	NA
M6_p20	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	118	0	0	NA	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.380399943	3	0.9456736	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	115	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.305259214	3	0.9975791	ATG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.934562823	1	0.9992707	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	42955913	12A2p6	cell line	sgMsh2	42955913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	559	0	0	NA	exonic	Olfr444	synonymous SNV	Olfr444:NM_146656:exon1:c.A414G:p.K138K	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.680962861	2	0.9999787	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	387	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.441451786	3	0.8813218	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	43167977	12A2p6	cell line	sgMsh2	43167977	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	84	0	0	NA	exonic	Olfr437	nonsynonymous SNV	Olfr437:NM_146296:exon1:c.G918T:p.K306N	6qB2.1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	0.9990545	AGA	nonsynonymous	AGA	9	AGAAGAAGA	NA
M6_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	182	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.342829578	3	0.9993552	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	47821490	12A2p6	cell line	sgMsh2	47821490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	257	0	0	NA	exonic	Zfp786	synonymous SNV	Zfp786:NM_177882:exon4:c.A513C:p.V171V	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.624607314	2	0.9999186	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr6	47890077	12A2p6	cell line	sgMsh2	47890077	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	103	0	0	NA	exonic	Zfp282	synonymous SNV	Zfp282:NM_146175:exon3:c.C597T:p.T199T	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	0.9778709	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	88	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.427362899	3	7.50E-05	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48495247	12A2p6	cell line	sgMsh2	48495247	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	148	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon94:c.C14374T:p.R4792C	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.709140635	2	0.8043059	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48677655	12A2p6	cell line	sgMsh2	48677655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	361	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.C175A:p.L59I	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.803066546	1	0.9990834	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48678048	12A2p6	cell line	sgMsh2	48678048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	158	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.A568G:p.M190V	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999976	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48708056	12A2p6	cell line	sgMsh2	48708056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	136	0	0	NA	exonic	Gimap6	nonsynonymous SNV	Gimap6:NM_153175:exon1:c.A95G:p.Y32C	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.488414742	2	0.8943934	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48723489	12A2p6	cell line	sgMsh2	48723489	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.146	53	0	0	NA	exonic	Gimap7	nonsynonymous SNV	Gimap7:NM_146167:exon2:c.A8C:p.E3A	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.685659157	2	0.6857449	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48742609	12A2p6	cell line	sgMsh2	48742609	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	50	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.T154A:p.F52I,Gimap1:NM_175860:exon3:c.T154A:p.F52I"	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9853852	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48743156	12A2p6	cell line	sgMsh2	48743156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	83	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.A701G:p.D234G,Gimap1:NM_175860:exon3:c.A701G:p.D234G"	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.882903572	1	0.978569	GAC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr6	48907730	12A2p6	cell line	sgMsh2	48907730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	60	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon2:c.A1706G:p.Q569R,Aoc1:NM_001161622:exon3:c.A1706G:p.Q569R,Aoc1:NM_029638:exon3:c.A1706G:p.Q569R"	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.680962861	2	0.7307374	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	48975491	12A2p6	cell line	sgMsh2	48975491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	115	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.A349G:p.T117A	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.469629559	2	0.749664	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	49438524	12A2p6	cell line	sgMsh2	49438525	AA	TT	DBS	Mutect2;Vardict	2	0.081	381	0	0	NA	exonic	Stk31	nonframeshift substitution	"Stk31:NM_001381960:exon14:c.1723_1724TT:p.K575L,Stk31:NM_029916:exon14:c.1792_1793TT:p.K598L"	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.380399943	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	50320078	12A2p6	cell line	sgMsh2	50320078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	97	0	0	NA	exonic	Osbpl3	nonsynonymous SNV	"Osbpl3:NM_001163645:exon15:c.T1639A:p.C547S,Osbpl3:NM_027881:exon15:c.T1747A:p.C583S,Osbpl3:NM_001347213:exon17:c.T1840A:p.C614S"	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.676266565	2	0.8667757	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	50574046	12A2p6	cell line	sgMsh2	50574046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	349	0	0	NA	exonic	4921507P07Rik	synonymous SNV	4921507P07Rik:NM_027564:exon10:c.T1422C:p.Y474Y	6qB2.3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	0.9999961	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Strelka2;Vardict	2	0.4444	9	0	0	NA	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6_p20	chr6	51458223	12A2p6	cell line	sgMsh2	51458223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	271	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.A1762G:p.T588A	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	1.25E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	52012366	12A2p6	cell line	sgMsh2	52012366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	67	0	0	NA	exonic	Skap2	synonymous SNV	Skap2:NM_018773:exon1:c.T36C:p.P12P	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9962675	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	61	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.469629559	2	0.7073495	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	53818171	12A2p6	cell line	sgMsh2	53818171	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	30	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.G2065T:p.G689C	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9302904	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	55075386	12A2p6	cell line	sgMsh2	55075386	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	105	0	0	NA	exonic	Gars	synonymous SNV	Gars:NM_180678:exon14:c.A1674G:p.E558E	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.262992553	3	0.9991841	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	55872621	12A2p6	cell line	sgMsh2	55872621	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	195	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.A137C:p.N46T	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.62930361	2	0.9989043	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	189	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.314651805	3	0.9999362	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	55898057	12A2p6	cell line	sgMsh2	55898057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	304	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.T991G:p.C331G	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.845333207	1	0.9999528	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	56741496	12A2p6	cell line	sgMsh2	56741496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon11:c.T1346C:p.I449T	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.695051748	2	0.9791937	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	56851461	12A2p6	cell line	sgMsh2	56851461	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	292	0	0	NA	exonic	Fkbp9	synonymous SNV	Fkbp9:NM_012056:exon4:c.T657C:p.R219R	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.385096239	3	0.9994713	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr6	57159416	12A2p6	cell line	sgMsh2	57159416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	427	0	0	NA	exonic	Vmn1r12	nonsynonymous SNV	Vmn1r12:NM_001101579:exon1:c.T497C:p.V166A	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.690355452	2	0.9990067	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	57233566	12A2p6	cell line	sgMsh2	57233566	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	297	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A128C:p.K43T	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.986222075	1	1.11E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	57233999	12A2p6	cell line	sgMsh2	57233999	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.148	566	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A561G:p.I187M	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.695051748	2	0.9997707	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	57360638	12A2p6	cell line	sgMsh2	57360638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	617	0	0	NA	exonic	Vmn1r17	nonsynonymous SNV	Vmn1r17:NM_134171:exon1:c.A741G:p.I247M	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	1.32E-09	ATA	nonsynonymous	ATGAT	10	ATGATATGAT	NA
M6_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	223	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.39448883	3	0.9919514	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	57611833	12A2p6	cell line	sgMsh2	57611833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	151	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon10:c.A1273G:p.R425G	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.521288811	2	0.9847138	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	57723627	12A2p6	cell line	sgMsh2	57723627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	268	0	0	NA	exonic	Lancl2	synonymous SNV	Lancl2:NM_133737:exon4:c.T669C:p.A223A	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	1.32E-09	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr6	57978758	12A2p6	cell line	sgMsh2	57978758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	592	0	0	NA	exonic	Vmn1r25	nonsynonymous SNV	Vmn1r25:NM_053238:exon1:c.T545C:p.F182S	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.87351098	1	1.02E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	58307429	12A2p6	cell line	sgMsh2	58307429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	709	0	0	NA	exonic	Vmn1r29	synonymous SNV	Vmn1r29:NM_053232:exon1:c.C133T:p.L45L	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	1.01E-09	ACT	synonymous	NA	NA	NA	NA
M6_p20	chr6	58955281	12A2p6	cell line	sgMsh2	58955281	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	239	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon11:c.A1106T:p.K369M	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.826548024	1	0.9984269	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	59354815	12A2p6	cell line	sgMsh2	59354815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	79	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.G506T:p.G169V	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.723229521	2	0.5810573	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	60972984	12A2p6	cell line	sgMsh2	60972984	A	-	Deletion	Mutect2;Vardict	2	0.152	140	0	0	NA	exonic	Mmrn1	frameshift deletion	"Mmrn1:NM_001163507:exon5:c.917delA:p.K307Nfs*5,Mmrn1:NM_027613:exon5:c.917delA:p.K307Nfs*5"	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.71383693	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr6	60976637	12A2p6	cell line	sgMsh2	60976637	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	273	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.A1901C:p.Q634P,Mmrn1:NM_027613:exon6:c.A1901C:p.Q634P"	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.742014704	1	0.5200711	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	61638471	12A2p6	cell line	sgMsh2	61638471	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	136	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon7:c.A1956T:p.S652S,Ccser1:NM_183310:exon7:c.A1956T:p.S652S"	6qB3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999859	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	64665882	12A2p6	cell line	sgMsh2	64665882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	98	0	0	NA	exonic	Grid2	nonsynonymous SNV	Grid2:NM_008167:exon16:c.A2627G:p.H876R	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.648088792	2	0.9402984	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	65859463	12A2p6	cell line	sgMsh2	65859463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	104	0	0	NA	exonic	Prdm5	nonsynonymous SNV	Prdm5:NM_027547:exon6:c.G757A:p.E253K	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.563555471	2	0.9880561	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	65927965	12A2p6	cell line	sgMsh2	65927965	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	125	0	0	NA	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon10:c.C1027T:p.R343W,Prdm5:NM_027547:exon14:c.C1579T:p.R527W"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.408577717	3	0.8506713	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	65953308	12A2p6	cell line	sgMsh2	65953308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	229	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A526G:p.R176G	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.774888773	1	0.9216206	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	66539850	12A2p6	cell line	sgMsh2	66539851	TA	AG	DBS	Mutect2;Vardict	2	0.049	443	0	0	NA	exonic	Mad2l1	nonframeshift substitution	"Mad2l1:NM_001355624:exon5:c.525_526AG:p.T176A,Mad2l1:NM_019499:exon5:c.525_526AG:p.T176A"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.230118484	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	71373786	12A2p6	cell line	sgMsh2	71373786	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	98	0	0	NA	exonic	Cd8a	synonymous SNV	"Cd8a:NM_001081110:exon1:c.C234A:p.T78T,Cd8a:NM_009857:exon1:c.C234A:p.T78T"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.657481383	2	0.9220558	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	277	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	1.16E-09	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	71496844	12A2p6	cell line	sgMsh2	71496844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	168	0	0	NA	exonic	Rnf103	nonsynonymous SNV	Rnf103:NM_009543:exon2:c.A240C:p.E80D	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.676266565	2	0.9666194	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	266	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.540073993	2	0.9998352	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	117	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.601125836	2	0.9927156	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	123	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.826548024	1	0.9677287	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	77244542	12A2p6	cell line	sgMsh2	77244542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	113	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.C981A:p.S327S,Lrrtm1:NM_028880:exon2:c.C981A:p.S327S"	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.967436892	1	0.9997117	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	78376435	12A2p6	cell line	sgMsh2	78376435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	246	0	0	NA	exonic	Reg3d	nonsynonymous SNV	"Reg3d:NM_001161741:exon4:c.C286T:p.H96Y,Reg3d:NM_013893:exon5:c.C424T:p.H142Y"	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.591733245	2	0.9999879	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	81964328	12A2p6	cell line	sgMsh2	81964328	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	57	0	0	NA	exonic	Mrpl19	nonsynonymous SNV	Mrpl19:NM_026490:exon2:c.G251A:p.R84K	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.530681402	2	0.09805606	CCT	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr6	82091907	12A2p6	cell line	sgMsh2	82091907	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.139	77	0	0	NA	exonic	Eva1a	frameshift deletion	Eva1a:NM_145570:exon3:c.214delC:p.R73Gfs*38	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	NA	NA	TCC	frameshift	NA	NA	NA	-1
M6_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	66	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	0.9959541	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	84099572	12A2p6	cell line	sgMsh2	84099572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	116	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon19:c.T1876C:p.Y626H,Dysf:NM_001077694:exon20:c.T1966C:p.Y656H,Dysf:NM_021469:exon20:c.T1969C:p.Y657H"	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.718533226	2	0.6746275	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	85628589	12A2p6	cell line	sgMsh2	85628589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	239	0	0	NA	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon10:c.T5813C:p.V1938A	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.718533226	2	0.8424464	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	86118765	12A2p6	cell line	sgMsh2	86118765	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	92	0	0	NA	exonic	Add2	nonsynonymous SNV	"Add2:NM_001271857:exon16:c.A2162C:p.E721A,Add2:NM_001271858:exon16:c.A2162C:p.E721A,Add2:NM_001271859:exon16:c.A2162C:p.E721A,Add2:NM_013458:exon16:c.A2162C:p.E721A"	6qC3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.427362899	3	0.6111441	GAG	nonsynonymous	AAG	15	AAGAAGAAGGAGAAG	NA
M6_p20	chr6	86524911	12A2p6	cell line	sgMsh2	86524911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	74	0	0	NA	exonic	Pcbp1	synonymous SNV	Pcbp1:NM_011865:exon1:c.T1005C:p.S335S	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.807762842	1	0.8420582	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	87588585	12A2p6	cell line	sgMsh2	87588585	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	225	0	0	NA	exonic	Prokr1	nonsynonymous SNV	"Prokr1:NM_001355655:exon2:c.C277A:p.L93I,Prokr1:NM_021381:exon2:c.C277A:p.L93I"	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.94865171	1	0.9999996	AGC	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr6	87925729	12A2p6	cell line	sgMsh2	87925729	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	145	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon5:c.A551G:p.E184G	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.342829578	3	0.9967175	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	111	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.821851729	1	0.9488677	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.129	75	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.605822132	2	0.9483784	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	15	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	0.7948483	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	89870010	12A2p6	cell line	sgMsh2	89870010	G	-	Deletion	Mutect2;Vardict	2	0.055	429	0	0	NA	exonic	Vmn1r43	frameshift deletion	Vmn1r43:NM_053220:exon1:c.493delC:p.Q165Nfs*11	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.258296258	NA	NA	TGA	frameshift	NA	NA	NA	-1
M6_p20	chr6	90179503	12A2p6	cell line	sgMsh2	90179503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	435	0	0	NA	exonic	Vmn1r52	nonsynonymous SNV	Vmn1r52:NM_053222:exon1:c.T788C:p.I263T	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	1	0.9984437	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	90203026	12A2p6	cell line	sgMsh2	90203026	A	G	SNV	Mutect2;MuSe;Vardict	3	0.106	442	0	0	NA	exonic	V1ra8	synonymous SNV	V1ra8:NM_053223:exon1:c.A210G:p.T70T	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.497807333	2	0.999084	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	90417670	12A2p6	cell line	sgMsh2	90417670	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	123	0	0	NA	exonic	Cfap100	synonymous SNV	Cfap100:NM_173775:exon4:c.C174T:p.H58H	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.558859176	2	0.9938981	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	545	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.493111037	2	0.9994495	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	91172243	12A2p6	cell line	sgMsh2	91172243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	74	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon9:c.G728T:p.R243M	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.798370251	1	0.8107256	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	91365853	12A2p6	cell line	sgMsh2	91365853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	187	0	0	NA	exonic	Wnt7a	nonsynonymous SNV	Wnt7a:NM_009527:exon4:c.A1046C:p.K349T	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.690355452	2	0.9495689	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	91408767	12A2p6	cell line	sgMsh2	91408767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	121	0	0	NA	exonic	Wnt7a	nonsynonymous SNV	"Wnt7a:NM_001363757:exon2:c.T203C:p.M68T,Wnt7a:NM_009527:exon2:c.T203C:p.M68T"	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999526	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	176	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.324044396	3	0.9997581	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	92458604	12A2p6	cell line	sgMsh2	92458604	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	83	0	0	NA	exonic	Prickle2	nonsynonymous SNV	"Prickle2:NM_001134459:exon2:c.G15A:p.M5I,Prickle2:NM_001134460:exon2:c.G15A:p.M5I,Prickle2:NM_001134461:exon2:c.G15A:p.M5I,Prickle2:NM_001081146:exon3:c.G183A:p.M61I"	6qD1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9989749	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	231	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.361614761	3	0.9996184	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	98003970	12A2p6	cell line	sgMsh2	98003970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	244	0	0	NA	exonic	Mitf	synonymous SNV	"Mitf:NM_008601:exon5:c.A525G:p.P175P,Mitf:NM_001113198:exon6:c.A846G:p.P282P,Mitf:NM_001178049:exon6:c.A798G:p.P266P"	6qD3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.549466584	2	0.9998645	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	98013757	12A2p6	cell line	sgMsh2	98013757	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	143	0	0	NA	exonic	Mitf	nonsynonymous SNV	"Mitf:NM_008601:exon8:c.C799A:p.L267I,Mitf:NM_001113198:exon9:c.C1120A:p.L374I,Mitf:NM_001178049:exon9:c.C1072A:p.L358I"	6qD3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.807762842	1	0.9561062	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	332	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	103691644	12A2p6	cell line	sgMsh2	103691644	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	148	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon12:c.A1337G:p.E446G	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.43675549	3	0.6486931	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	103711236	12A2p6	cell line	sgMsh2	103711236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	69	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon23:c.A3036G:p.L1012L	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.638696201	2	0.887229	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	104845775	12A2p6	cell line	sgMsh2	104845775	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	156	0	0	NA	exonic	Cntn6	synonymous SNV	Cntn6:NM_017383:exon18:c.C2286T:p.I762I	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.591733245	2	0.9990822	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	106353644	12A2p6	cell line	sgMsh2	106353644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	301	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon5:c.T222C:p.D74D,Cntn4:NM_001109751:exon6:c.T222C:p.D74D,Cntn4:NM_001364566:exon6:c.T222C:p.D74D,Cntn4:NM_001109749:exon7:c.T222C:p.D74D,Cntn4:NM_173004:exon7:c.T222C:p.D74D"	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.685659157	2	0.9948836	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr6	108152244	12A2p6	cell line	sgMsh2	108152244	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.102	86	0	0	NA	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.T817C:p.F273L	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.479022151	2	0.7842685	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	108152315	12A2p6	cell line	sgMsh2	108152315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	69	0	0	NA	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.A746G:p.Q249R	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.633999905	2	0.09889589	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	103	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9997967	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M6_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	106	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9998405	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	156	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.563555471	2	0.9986746	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	113672757	12A2p6	cell line	sgMsh2	113672757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	69	0	0	NA	exonic	Irak2	nonsynonymous SNV	"Irak2:NM_001113553:exon4:c.T391C:p.S131P,Irak2:NM_172161:exon5:c.T535C:p.S179P"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.727925817	2	0.5405487	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	113686774	12A2p6	cell line	sgMsh2	113686774	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	147	0	0	NA	exonic	Irak2	nonsynonymous SNV	"Irak2:NM_001113553:exon10:c.G1139A:p.S380N,Irak2:NM_172161:exon11:c.G1283A:p.S428N"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.371007352	3	0.9858554	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	113690786	12A2p6	cell line	sgMsh2	113690786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	48	0	0	NA	exonic	Irak2	stopgain	"Irak2:NM_001113553:exon11:c.C1327T:p.R443X,Irak2:NM_172161:exon12:c.C1471T:p.R491X"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.732622113	1	0.5009543	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	114302069	12A2p6	cell line	sgMsh2	114302069	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	110	0	0	NA	exonic	Slc6a1	synonymous SNV	Slc6a1:NM_178703:exon3:c.C120T:p.D40D	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	0.9998846	ACC	synonymous	NA	NA	NA	NA
M6_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	122	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.408577717	3	0.8431668	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	115925759	12A2p6	cell line	sgMsh2	115925759	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.167	22	0	0	NA	exonic	Ift122	nonsynonymous SNV	"Ift122:NM_001167763:exon28:c.A3301T:p.S1101C,Ift122:NM_031177:exon28:c.A3304T:p.S1102C"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.784281364	1	0.6025633	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	115956078	12A2p6	cell line	sgMsh2	115956078	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	215	0	0	NA	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon35:c.A5588G:p.K1863R	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.544770289	2	0.9994724	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	115965922	12A2p6	cell line	sgMsh2	115965922	C	-	Deletion	Mutect2;Vardict	2	0.102	240	0	0	NA	exonic	Plxnd1	frameshift deletion	Plxnd1:NM_026376:exon20:c.3800delG:p.G1267Afs*66	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.479022151	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6_p20	chr6	115967825	12A2p6	cell line	sgMsh2	115967825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	96	0	0	NA	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon15:c.A3007G:p.I1003V	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.680962861	2	0.84684	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	116043378	12A2p6	cell line	sgMsh2	116043378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	207	0	0	NA	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon2:c.A32G:p.K11R,Tmcc1:NM_177412:exon4:c.A992G:p.K331R"	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.638696201	2	0.998687	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	116259224	12A2p6	cell line	sgMsh2	116259224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	335	0	0	NA	exonic	Washc2	nonsynonymous SNV	Washc2:NM_026585:exon29:c.G3655A:p.D1219N	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.568251767	2	0.9999994	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	116414553	12A2p6	cell line	sgMsh2	116414553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	149	0	0	NA	exonic	Alox5	nonsynonymous SNV	Alox5:NM_009662:exon9:c.G1242T:p.Q414H	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.59642954	2	0.9985473	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	116427220	12A2p6	cell line	sgMsh2	116427220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	124	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon4:c.A477G:p.K159K	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.793673955	1	0.8950483	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr6	116582189	12A2p6	cell line	sgMsh2	116582189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	317	0	0	NA	exonic	Olfr215	synonymous SNV	Olfr215:NM_146446:exon1:c.C756T:p.S252S	6qE3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.756103591	1	0.8135535	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr6	118126130	12A2p6	cell line	sgMsh2	118126130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	104	0	0	NA	exonic	Csgalnact2	synonymous SNV	"Csgalnact2:NM_001362149:exon3:c.G870A:p.Q290Q,Csgalnact2:NM_030165:exon3:c.G870A:p.Q290Q"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.962740597	1	0.999365	TCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	118404595	12A2p6	cell line	sgMsh2	118404595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	143	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.T1981G:p.S661A	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.516592515	2	0.9765124	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	118411538	12A2p6	cell line	sgMsh2	118411538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	87	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon8:c.T1039C:p.Y347H	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.835940616	1	0.9376623	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Vardict	2	0.146	100	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.685659157	NA	NA	CGT	frameshift	NA	NA	NA	-1
M6_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	100	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.798370251	1	0.8708176	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M6_p20	chr6	119242886	12A2p6	cell line	sgMsh2	119242886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	326	0	0	NA	exonic	Cacna2d4	nonsynonymous SNV	"Cacna2d4:NM_001033382:exon5:c.A532G:p.R178G,Cacna2d4:NM_001347427:exon5:c.A532G:p.R178G"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.812459138	1	0.9993222	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	119773806	12A2p6	cell line	sgMsh2	119773806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	279	0	0	NA	exonic	Erc1	synonymous SNV	"Erc1:NM_178085:exon6:c.T960C:p.S320S,Erc1:NM_053204:exon8:c.T1497C:p.S499S"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.507199924	2	0.9964945	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	120208928	12A2p6	cell line	sgMsh2	120208928	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	83	0	0	NA	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon17:c.A2549C:p.Q850P	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.723229521	2	7.97E-05	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	120334800	12A2p6	cell line	sgMsh2	120334800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	167	0	0	NA	exonic	Ccdc77	nonsynonymous SNV	"Ccdc77:NM_001381937:exon6:c.A634G:p.N212D,Ccdc77:NM_001381934:exon8:c.A790G:p.N264D,Ccdc77:NM_001381935:exon8:c.A736G:p.N246D,Ccdc77:NM_001381936:exon8:c.A736G:p.N246D,Ccdc77:NM_001381938:exon8:c.A133G:p.N45D,Ccdc77:NM_026028:exon8:c.A790G:p.N264D"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	2	0.9981612	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	120756781	12A2p6	cell line	sgMsh2	120756781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	114	0	0	NA	exonic	Cecr2	synonymous SNV	"Cecr2:NM_001128151:exon14:c.A1728G:p.S576S,Cecr2:NM_001368706:exon14:c.A1728G:p.S576S"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.770192477	1	0.7578224	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	121190155	12A2p6	cell line	sgMsh2	121190155	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	66	0	0	NA	exonic	Pex26	nonsynonymous SNV	"Pex26:NM_001304773:exon4:c.G722A:p.G241D,Pex26:NM_028730:exon4:c.G722A:p.G241D"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.624607314	2	0.09072996	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	121840105	12A2p6	cell line	sgMsh2	121840105	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	305	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon2:c.T132C:p.P44P	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	2	0.9997966	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	122049751	12A2p6	cell line	sgMsh2	122049751	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	223	0	0	NA	exonic	Mug2	nonsynonymous SNV	Mug2:NM_008646:exon14:c.T1643C:p.V548A	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.737318408	2	0.5582612	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	122279655	12A2p6	cell line	sgMsh2	122279655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	197	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon2:c.A171G:p.Q57Q	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.71383693	2	0.8381343	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	122322387	12A2p6	cell line	sgMsh2	122322387	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	142	0	0	NA	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon8:c.C1841A:p.P614H,Phc1:NM_001271579:exon9:c.C1997A:p.P666H,Phc1:NM_007905:exon9:c.C1997A:p.P666H,Phc1:NM_001355215:exon10:c.C2045A:p.P682H"	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.864118389	1	0.9962446	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	212	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.413274012	3	0.9545164	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	122850369	12A2p6	cell line	sgMsh2	122850369	A	-	Deletion	Mutect2;Vardict	2	0.132	196	0	0	NA	exonic	C3ar1	frameshift deletion	C3ar1:NM_009779:exon2:c.888delT:p.T297Lfs*29	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	NA	NA	TAG	frameshift	NA	NA	NA	-1
M6_p20	chr6	122850373	12A2p6	cell line	sgMsh2	122850373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.139	195	0	0	NA	exonic	C3ar1	nonsynonymous SNV	C3ar1:NM_009779:exon2:c.T884C:p.F295S	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.652785087	2	0.9953907	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123235521	12A2p6	cell line	sgMsh2	123235521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	71	0	0	NA	exonic	Clec4n	nonsynonymous SNV	"Clec4n:NM_001190320:exon3:c.T205G:p.F69V,Clec4n:NM_001190321:exon3:c.T193G:p.F65V,Clec4n:NM_020001:exon4:c.T295G:p.F99V"	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.83124432	1	0.8944908	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123335676	12A2p6	cell line	sgMsh2	123335676	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	459	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.T1704G:p.D568E	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.248903666	3	1	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123335825	12A2p6	cell line	sgMsh2	123335825	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	364	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.G1853T:p.R618L	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.248903666	3	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123712979	12A2p6	cell line	sgMsh2	123712979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	555	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.A813G:p.T271T	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.784281364	1	0.9993774	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	637	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.3193481	3	1.00E-09	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	814	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.422666603	3	0.9999778	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	910	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.558859176	2	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	123816064	12A2p6	cell line	sgMsh2	123816064	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.146	242	0	0	NA	exonic	Vmn2r24	synonymous SNV	Vmn2r24:NM_001104639:exon6:c.G2349A:p.E783E	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.685659157	2	0.9852979	AGG	synonymous	A	5	AAAAA	NA
M6_p20	chr6	123822895	12A2p6	cell line	sgMsh2	123822895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	321	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon6:c.A2487G:p.L829L	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.690355452	2	0.9942713	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr6	124039164	12A2p6	cell line	sgMsh2	124039164	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	451	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon3:c.A586C:p.M196L	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.835940616	1	0.9999984	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124223967	12A2p6	cell line	sgMsh2	124223967	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	282	0	0	NA	exonic	Vmn2r27	nonsynonymous SNV	Vmn2r27:NM_001104642:exon3:c.C1030A:p.L344I	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.441451786	3	0.7822112	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124325514	12A2p6	cell line	sgMsh2	124325514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	177	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon12:c.A3036G:p.K1012K,Cd163:NM_053094:exon12:c.A3036G:p.K1012K"	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.765496182	1	0.8051317	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	124702305	12A2p6	cell line	sgMsh2	124702305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	277	0	0	NA	exonic	Lpcat3	nonsynonymous SNV	Lpcat3:NM_145130:exon8:c.A856G:p.T286A	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.544770289	2	0.9999276	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124728798	12A2p6	cell line	sgMsh2	124728798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	60	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A505G:p.I169V,Ptpn6:NM_013545:exon4:c.A499G:p.I167V"	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.67157027	2	0.7633952	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	71	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.624607314	2	0.917642	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124809730	12A2p6	cell line	sgMsh2	124809730	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	30	0	0	NA	exonic	Spsb2	nonsynonymous SNV	"Spsb2:NM_001306050:exon2:c.A425G:p.H142R,Spsb2:NM_001306051:exon2:c.A425G:p.H142R,Spsb2:NM_001306052:exon2:c.A425G:p.H142R,Spsb2:NM_001306053:exon2:c.A425G:p.H142R,Spsb2:NM_013539:exon2:c.A425G:p.H142R"	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.751407295	1	0.008253521	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124831481	12A2p6	cell line	sgMsh2	124831481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	189	0	0	NA	exonic	Cdca3	synonymous SNV	Cdca3:NM_013538:exon3:c.T240C:p.S80S	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.648088792	2	0.9958646	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	124837668	12A2p6	cell line	sgMsh2	124837668	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	228	0	0	NA	exonic	Gnb3	nonsynonymous SNV	Gnb3:NM_013530:exon5:c.A266T:p.K89M	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.939259119	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Vardict	2	0.155	54	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.727925817	NA	NA	CGG	frameshift	NA	NA	NA	-1
M6_p20	chr6	125165300	12A2p6	cell line	sgMsh2	125165300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	130	0	0	NA	exonic	Gapdh	synonymous SNV	Gapdh:NM_001289726:exon2:c.A72T:p.V24V	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.521288811	2	0.9753015	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	127	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.324044396	3	0.9970449	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	125177429	12A2p6	cell line	sgMsh2	125177429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	116	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon15:c.A1823G:p.E608G	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.845333207	1	0.9802141	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	125184281	12A2p6	cell line	sgMsh2	125184281	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	124	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon8:c.A787C:p.S263R	6qF2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.403881421	3	0.8743381	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	125656649	12A2p6	cell line	sgMsh2	125656649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	342	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon36:c.T6097C:p.Y2033H	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.601125836	2	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	125667493	12A2p6	cell line	sgMsh2	125667493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	180	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon43:c.T7310C:p.V2437A	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.854725798	1	0.9984956	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	332	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.244207371	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	126101934	12A2p6	cell line	sgMsh2	126101934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	120	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A608G:p.Y203C,Ntf3:NM_008742:exon2:c.A569G:p.Y190C,Ntf3:NM_001164034:exon3:c.A608G:p.Y203C"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.723229521	2	0.6416501	ATA	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	110	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.328740692	3	0.991486	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	117	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.361614761	3	0.9747815	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	126738672	12A2p6	cell line	sgMsh2	126738672	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	237	0	0	NA	exonic	Kcna6	nonsynonymous SNV	Kcna6:NM_013568:exon1:c.T1253C:p.V418A	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.803066546	1	0.9905099	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	126866824	12A2p6	cell line	sgMsh2	126866824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	110	0	0	NA	exonic	Akap3	nonsynonymous SNV	Akap3:NM_009650:exon5:c.A2405G:p.Y802C	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	1	0.9892585	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	126928223	12A2p6	cell line	sgMsh2	126928223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	440	0	0	NA	exonic	Rad51ap1	synonymous SNV	"Rad51ap1:NM_001347455:exon5:c.T324C:p.T108T,Rad51ap1:NM_009013:exon5:c.T324C:p.T108T"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.868814685	1	2.38E-08	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	127146068	12A2p6	cell line	sgMsh2	127146068	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	101	0	0	NA	exonic	Ccnd2	nonsynonymous SNV	Ccnd2:NM_009829:exon3:c.C523A:p.L175M	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.371007352	3	0.9373604	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	128243381	12A2p6	cell line	sgMsh2	128243381	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	79	0	0	NA	exonic	Tead4	nonsynonymous SNV	"Tead4:NM_001080979:exon7:c.G562A:p.D188N,Tead4:NM_011567:exon8:c.G691A:p.D231N"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.71383693	2	0.636591	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	128487428	12A2p6	cell line	sgMsh2	128487428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	229	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon31:c.A4135G:p.T1379A	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.756103591	1	0.7521056	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	128499002	12A2p6	cell line	sgMsh2	128499002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	139	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon17:c.A2058T:p.P686P	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.525985106	2	0.9841712	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	128581002	12A2p6	cell line	sgMsh2	128581002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	219	0	0	NA	exonic	A2ml1	nonsynonymous SNV	A2ml1:NM_001001179:exon2:c.A190G:p.T64A	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	1	0.965636	GTA	nonsynonymous	TAG	8	TAGTAGTA	NA
M6_p20	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	240	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.328740692	3	0.999986	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr6	130327147	12A2p6	cell line	sgMsh2	130327147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	630	0	0	NA	exonic	Klra3	nonsynonymous SNV	"Klra3:NM_001289604:exon6:c.T581C:p.V194A,Klra3:NM_001289605:exon6:c.T581C:p.V194A,Klra3:NM_010648:exon6:c.T581C:p.V194A"	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.911081345	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	131684865	12A2p6	cell line	sgMsh2	131684865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	112	0	0	NA	exonic	Tas2r104	synonymous SNV	Tas2r104:NM_207011:exon1:c.C880T:p.L294L	6qF3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.967436892	1	0.9996906	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr6	132711246	12A2p6	cell line	sgMsh2	132711246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	297	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.A683G:p.H228R	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.718533226	2	0.8931433	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	206	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	4.97E-08	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	132856271	12A2p6	cell line	sgMsh2	132856271	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	140	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.C834T:p.S278S	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.549466584	2	0.9952662	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr6	132951200	12A2p6	cell line	sgMsh2	132951200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	258	0	0	NA	exonic	Tas2r129	nonsynonymous SNV	Tas2r129:NM_207029:exon1:c.A99G:p.I33M	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.408577717	3	0.9866982	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	132952057	12A2p6	cell line	sgMsh2	132952057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	73	0	0	NA	exonic	Tas2r129	nonsynonymous SNV	Tas2r129:NM_207029:exon1:c.T956C:p.I319T	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	1	0.9977	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	132980733	12A2p6	cell line	sgMsh2	132980733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	334	0	0	NA	exonic	Tas2r109	nonsynonymous SNV	Tas2r109:NM_207017:exon1:c.T233C:p.L78P	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.455540673	2	0.5333723	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	134248493	12A2p6	cell line	sgMsh2	134248493	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	36	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A686G:p.N229S,Etv6:NM_001303102:exon6:c.A557G:p.N186S"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.896992458	1	0.8708807	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	170	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.901688754	1	0.9998267	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	134507677	12A2p6	cell line	sgMsh2	134507677	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	82	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon6:c.A982G:p.T328A	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.441451786	2	0.5260996	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	217	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.35222217	3	0.9997027	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	195	0	0	NA	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.605822132	2	0.9997299	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	135106215	12A2p6	cell line	sgMsh2	135106215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	233	0	0	NA	exonic	Gprc5d	synonymous SNV	Gprc5d:NM_001205396:exon4:c.A1014C:p.P338P	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.87351098	1	0.9999412	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr6	135106258	12A2p6	cell line	sgMsh2	135106258	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	198	0	0	NA	exonic	Gprc5d	stoploss	Gprc5d:NM_053118:exon3:c.A903C:p.X301C	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.746710999	1	0.5977753	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	135116037	12A2p6	cell line	sgMsh2	135116037	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	87	0	0	NA	exonic	Gprc5d	nonsynonymous SNV	"Gprc5d:NM_001205396:exon2:c.A871G:p.M291V,Gprc5d:NM_053118:exon2:c.A871G:p.M291V"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.446148081	2	0.5557354	ATC	nonsynonymous	ATCC	8	ATCCATCC	NA
M6_p20	chr6	135780148	12A2p6	cell line	sgMsh2	135780148	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	138	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon7:c.G1314T:p.K438N,Grin2b:NM_008171:exon7:c.G1314T:p.K438N"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.507199924	2	0.9582493	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	116	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.375703647	3	0.9526741	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	136044278	12A2p6	cell line	sgMsh2	136044278	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	72	0	0	NA	exonic	Grin2b	stopgain	"Grin2b:NM_001363750:exon4:c.T24A:p.C8X,Grin2b:NM_008171:exon4:c.T24A:p.C8X"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.699748043	2	0.6930724	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	136704287	12A2p6	cell line	sgMsh2	136704287	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	124	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_145067:exon23:c.G2726A:p.G909E,Gucy2c:NM_001127318:exon24:c.G2798A:p.G933E"	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.9999628	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	136908049	12A2p6	cell line	sgMsh2	136908049	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.25	62	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon6:c.G750T:p.E250D	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	1	0.994416	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	138657515	12A2p6	cell line	sgMsh2	138657515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	174	0	0	NA	exonic	Igbp1b	synonymous SNV	Igbp1b:NM_015777:exon1:c.A930G:p.Q310Q	6qG1	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.610518427	2	0.9991449	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr6	140042058	12A2p6	cell line	sgMsh2	140042058	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.13	247	0	0	NA	exonic	Capza3	nonsynonymous SNV	Capza3:NM_007605:exon1:c.T382C:p.Y128H	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.610518427	2	0.9999601	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	140643981	12A2p6	cell line	sgMsh2	140643981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	450	0	0	NA	exonic	Aebp2	nonsynonymous SNV	"Aebp2:NM_001005605:exon5:c.T1187C:p.L396P,Aebp2:NM_001309436:exon5:c.T521C:p.L174P,Aebp2:NM_001309437:exon5:c.T521C:p.L174P,Aebp2:NM_009637:exon5:c.T1187C:p.L396P,Aebp2:NM_178803:exon5:c.T521C:p.L174P"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.821851729	1	0.9999881	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	141481133	12A2p6	cell line	sgMsh2	141481133	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	0	0	NA	exonic	Pde3a	synonymous SNV	Pde3a:NM_018779:exon9:c.T2019A:p.A673A	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.981525779	1	0.9999899	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	139	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.399185125	3	0.92426	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr6	141812743	12A2p6	cell line	sgMsh2	141812743	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	216	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon13:c.1541delT:p.L514fs*0,Slco1a4:NM_030687:exon14:c.1541delT:p.L514fs*0"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M6_p20	chr6	141918548	12A2p6	cell line	sgMsh2	141918548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	197	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon11:c.A1525G:p.K509E	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.685659157	2	0.9674695	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	141939985	12A2p6	cell line	sgMsh2	141939985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	540	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon3:c.T313C:p.S105P	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.746710999	1	0.6893101	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	141972220	12A2p6	cell line	sgMsh2	141972220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	146	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon14:c.T1929C:p.D643D	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.619911018	2	0.995832	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr6	142003500	12A2p6	cell line	sgMsh2	142003500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	208	0	0	NA	exonic	Gm6614	nonsynonymous SNV	Gm6614:NM_001081318:exon2:c.T149C:p.L50P	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.62930361	2	0.9993121	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142103105	12A2p6	cell line	sgMsh2	142103105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	389	0	0	NA	exonic	Slco1a6	synonymous SNV	"Slco1a6:NM_001381930:exon8:c.T948C:p.P316P,Slco1a6:NM_023718:exon9:c.T948C:p.P316P"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.751407295	1	0.7676851	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Vardict	2	0.082	402	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.385096239	3	0.9999761	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142303310	12A2p6	cell line	sgMsh2	142303310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	238	0	0	NA	exonic	Iapp	nonsynonymous SNV	Iapp:NM_010491:exon3:c.A88G:p.S30G	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.704444339	2	0.9384742	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142367356	12A2p6	cell line	sgMsh2	142367356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	243	0	0	NA	exonic	Recql	synonymous SNV	"Recql:NM_001204906:exon10:c.T1134C:p.I378I,Recql:NM_001204907:exon10:c.T1134C:p.I378I,Recql:NM_001355511:exon10:c.T1134C:p.I378I,Recql:NM_023042:exon10:c.T1134C:p.I378I"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.774888773	1	0.9311959	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	311	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.267688849	3	1.33E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	103	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.483718446	2	0.831718	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142454479	12A2p6	cell line	sgMsh2	142454479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	116	0	0	NA	exonic	Gys2	synonymous SNV	Gys2:NM_145572:exon7:c.A1005G:p.S335S	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.939259119	1	0.9993474	TTG	synonymous	TTTG	8	TTTGTTTG	NA
M6_p20	chr6	142459492	12A2p6	cell line	sgMsh2	142459492	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	202	0	0	NA	exonic	Gys2	nonsynonymous SNV	Gys2:NM_145572:exon4:c.C568A:p.L190I	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.422666603	3	0.8960502	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	142645892	12A2p6	cell line	sgMsh2	142645892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	381	0	0	NA	exonic	Abcc9	synonymous SNV	"Abcc9:NM_001044720:exon20:c.A2370G:p.G790G,Abcc9:NM_001310143:exon20:c.A2370G:p.G790G,Abcc9:NM_021042:exon20:c.A2304G:p.G768G,Abcc9:NM_011511:exon21:c.A2409G:p.G803G,Abcc9:NM_021041:exon21:c.A2409G:p.G803G"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.878207276	1	0.9999999	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	325	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.314651805	3	3.87E-08	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.422	314	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M6_p20	chr6	146180313	12A2p6	cell line	sgMsh2	146180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	358	0	0	NA	exonic	Itpr2	nonsynonymous SNV	"Itpr2:NM_010586:exon48:c.T6713C:p.V2238A,Itpr2:NM_019923:exon49:c.T6812C:p.V2271A"	6qG3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.704444339	2	0.9849535	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	148204819	12A2p6	cell line	sgMsh2	148204819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	341	0	0	NA	exonic	Ergic2	nonsynonymous SNV	Ergic2:NM_026168:exon3:c.A172G:p.T58A	6qG3	chr6-3373003-148425959	5	4	1	0.93	4.367554902	NA	1	0.78897766	1	0.9939557	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	148846202	12A2p6	cell line	sgMsh2	148846202	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	128	0	0	NA	exonic	Caprin2	nonsynonymous SNV	"Caprin2:NM_001301351:exon16:c.A1757T:p.Q586L,Caprin2:NM_181541:exon17:c.A2414T:p.Q805L"	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	TGCAGC	14	TGCAGCTGCAGCTG	NA
M6_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	208	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr6	149511934	12A2p6	cell line	sgMsh2	149511934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	297	0	0	NA	exonic	Bicd1	nonsynonymous SNV	"Bicd1:NM_001112796:exon4:c.G822T:p.E274D,Bicd1:NM_009753:exon4:c.G822T:p.E274D"	6qG3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	3653248	12A2p6	cell line	sgMsh2	3653248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	211	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.T532C:p.Y178H	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.94865171	1	0.999999	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	112	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.39448883	3	0.8892613	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	3704668	12A2p6	cell line	sgMsh2	3704668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	55	0	0	NA	exonic	Rps9	synonymous SNV	Rps9:NM_029767:exon3:c.A120G:p.K40K	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	1	1	0.9902016	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	4128199	12A2p6	cell line	sgMsh2	4128199	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	64	0	0	NA	exonic	Ttyh1	stopgain	"Ttyh1:NM_001001454:exon5:c.T668A:p.L223X,Ttyh1:NM_001109765:exon5:c.T668A:p.L223X,Ttyh1:NM_001305822:exon5:c.T173A:p.L58X,Ttyh1:NM_021324:exon5:c.T668A:p.L223X"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	1	1	0.9952465	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	4238628	12A2p6	cell line	sgMsh2	4238628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	121	0	0	NA	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon4:c.T425C:p.L142P	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999526	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;MuSe;Vardict	3	0.074	490	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	2.96E-09	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Vardict	2	0.071	299	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.333436987	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr7	4477607	12A2p6	cell line	sgMsh2	4477607	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	155	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon16:c.A1559C:p.Q520P,Eps8l1:NM_001374622:exon16:c.A1742C:p.Q581P,Eps8l1:NM_026146:exon16:c.A1559C:p.Q520P"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5856047	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	4708135	12A2p6	cell line	sgMsh2	4708135	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	153	0	0	NA	exonic	Brsk1	nonsynonymous SNV	Brsk1:NM_001003920:exon16:c.G1853T:p.S618I	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.258296258	3	0.9999822	AGC	nonsynonymous	CAG	8	CAGCAGCA	NA
M6_p20	chr7	4836502	12A2p6	cell line	sgMsh2	4836502	T	A	SNV	Mutect2;MuSe;Vardict	3	0.346	19	0	0	NA	exonic	Shisa7	synonymous SNV	"Shisa7:NM_001290291:exon2:c.A222T:p.A74A,Shisa7:NM_172737:exon2:c.A222T:p.A74A"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	2	1	1	0.8444029	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	5008766	12A2p6	cell line	sgMsh2	5008766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	55	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A752G:p.K251R,Fiz1:NM_001110329:exon3:c.A752G:p.K251R,Fiz1:NM_001110330:exon3:c.A752G:p.K251R,Fiz1:NM_001360241:exon3:c.A752G:p.K251R,Fiz1:NM_001360242:exon3:c.A752G:p.K251R,Fiz1:NM_001360243:exon3:c.A752G:p.K251R,Fiz1:NM_011813:exon3:c.A752G:p.K251R"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9814823	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5075496	12A2p6	cell line	sgMsh2	5075496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	107	0	0	NA	exonic	U2af2	nonsynonymous SNV	"U2af2:NM_001205231:exon11:c.T1073C:p.L358P,U2af2:NM_133671:exon11:c.T1061C:p.L354P"	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.09600354	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;MuSe;Vardict	3	0.112	283	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.525985106	2	0.9995577	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	242	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	0.9999946	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5324897	12A2p6	cell line	sgMsh2	5324897	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	87	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon6:c.T2156C:p.V719A	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	8.35E-05	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5410476	12A2p6	cell line	sgMsh2	5410476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	201	0	0	NA	exonic	Vmn1r58	nonsynonymous SNV	Vmn1r58:NM_030739:exon2:c.A754G:p.I252V	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9668297	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	654	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr7	6316961	12A2p6	cell line	sgMsh2	6316961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	161	0	0	NA	exonic	Zfp583	nonsynonymous SNV	Zfp583:NM_001033249:exon5:c.T1051C:p.Y351H	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999981	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	461	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	3.96E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	6514657	12A2p6	cell line	sgMsh2	6514657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	136	0	0	NA	exonic	Olfr1349	synonymous SNV	Olfr1349:NM_207136:exon1:c.A771G:p.V257V	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9982695	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	170	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.8815284	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	190	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999842	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	151	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	8.54E-08	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	6710043	12A2p6	cell line	sgMsh2	6710043	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	280	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.C2179T:p.P727S	7qA1	chr7-3489139-7214089	4	2	2	0.93	4.367554902	NA	1	0.915777641	1	0.9999998	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	7889095	12A2p6	cell line	sgMsh2	7889095	T	C	SNV	Mutect2;MuSe	2	0.14	81	0	0	NA	exonic	Vmn2r36	nonsynonymous SNV	Vmn2r36:NM_001105068:exon3:c.A1213G:p.I405V	7qA1	chr7-7312117-10050631	8.48342593	6.48342593	2	0.93	4.367554902	NA	1	0.657481383	2	0.8816085	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	9986490	12A2p6	cell line	sgMsh2	9986490	A	G	SNV	Mutect2;Vardict	2	0.028	665	0	0	NA	exonic	Vmn2r49	nonsynonymous SNV	Vmn2r49:NM_001105156:exon3:c.T1073C:p.I358T	7qA1	chr7-7312117-10050631	8.48342593	6.48342593	2	0.93	4.367554902	NA	1	0.131496277	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10037612	12A2p6	cell line	sgMsh2	10037612	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	344	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.A2209T:p.I737F	7qA1	chr7-7312117-10050631	8.48342593	6.48342593	2	0.93	4.367554902	NA	3	1	1	1.00E-09	ATG	nonsynonymous	ATG	9	ATGATGATG	NA
M6_p20	chr7	10050152	12A2p6	cell line	sgMsh2	10050152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	106	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon2:c.A394G:p.N132D	7qA1	chr7-7312117-10050631	8.48342593	6.48342593	2	0.93	4.367554902	NA	3	1	1	0.9998405	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10168971	12A2p6	cell line	sgMsh2	10168971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	445	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.A1529G:p.K510R	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.9311843	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10274592	12A2p6	cell line	sgMsh2	10274592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	199	0	0	NA	exonic	Vmn1r66	synonymous SNV	Vmn1r66:NM_134230:exon1:c.C513T:p.Y171Y	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.999888	AGT	synonymous	NA	NA	NA	NA
M6_p20	chr7	10447363	12A2p6	cell line	sgMsh2	10447363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	546	0	0	NA	exonic	Vmn1r67	nonsynonymous SNV	Vmn1r67:NM_134229:exon1:c.G553A:p.V185M	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9999945	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10447706	12A2p6	cell line	sgMsh2	10447706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	168	0	0	NA	exonic	Vmn1r67	stopgain	Vmn1r67:NM_134229:exon1:c.G896A:p.W299X	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9982106	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	169	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9979245	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10715271	12A2p6	cell line	sgMsh2	10715271	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	90	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.C1400A:p.S467Y,Nlrp4b:NM_172481:exon4:c.C1400A:p.S467Y"	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	7.60E-05	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	10748632	12A2p6	cell line	sgMsh2	10748632	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.16	140	0	0	NA	exonic	Vmn1r71	nonsynonymous SNV	Vmn1r71:NM_145848:exon1:c.C128T:p.T43I	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6307185	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	11669849	12A2p6	cell line	sgMsh2	11669849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	213	0	0	NA	exonic	Vmn1r72	nonsynonymous SNV	Vmn1r72:NM_145843:exon1:c.A671G:p.Y224C	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.943955414	1	0.9999988	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	281	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9999918	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M6_p20	chr7	12304990	12A2p6	cell line	sgMsh2	12304990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	147	0	0	NA	exonic	Vmn1r82	synonymous SNV	Vmn1r82:NM_134234:exon1:c.A186G:p.G62G	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.973338	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	12305304	12A2p6	cell line	sgMsh2	12305304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	456	0	0	NA	exonic	Vmn1r82	nonsynonymous SNV	Vmn1r82:NM_134234:exon1:c.A500G:p.Y167C	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.9987947	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	12632429	12A2p6	cell line	sgMsh2	12632429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	597	0	0	NA	exonic	Vmn2r54	nonsynonymous SNV	Vmn2r54:NM_001384946:exon3:c.T793C:p.C265R	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	1	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	12670730	12A2p6	cell line	sgMsh2	12670730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	394	0	0	NA	exonic	Vmn2r55	nonsynonymous SNV	"Vmn2r55:NM_001104645:exon2:c.T745C:p.F249L,Vmn2r55:NM_001374650:exon3:c.T961C:p.F321L"	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.9945199	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	12848937	12A2p6	cell line	sgMsh2	12848937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	142	0	0	NA	exonic	Zfp110	nonsynonymous SNV	"Zfp110:NM_001360576:exon8:c.A1511G:p.K504R,Zfp110:NM_022981:exon8:c.A1511G:p.K504R"	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.535377698	2	0.9909899	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	81	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9400802	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.119	66	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.558859176	2	0.9352661	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	13131970	12A2p6	cell line	sgMsh2	13131970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	311	0	0	NA	exonic	Vmn1r87	nonsynonymous SNV	Vmn1r87:NM_134227:exon1:c.A389G:p.N130S	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999905	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	13219428	12A2p6	cell line	sgMsh2	13219428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	502	0	0	NA	exonic	Vmn1r89	synonymous SNV	Vmn1r89:NM_134226:exon1:c.T90C:p.Y30Y	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	1.26E-09	ATG	synonymous	TGTA	9	TGTATGTAT	NA
M6_p20	chr7	13261283	12A2p6	cell line	sgMsh2	13261283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	144	0	0	NA	exonic	Zswim9	nonsynonymous SNV	Zswim9:NM_177312:exon4:c.A946G:p.I316V	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.976176	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	13292474	12A2p6	cell line	sgMsh2	13292474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	118	0	0	NA	exonic	Lig1	synonymous SNV	"Lig1:NM_001083188:exon11:c.C867A:p.A289A,Lig1:NM_001199310:exon11:c.C867A:p.A289A,Lig1:NM_010715:exon11:c.C867A:p.A289A"	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.94865171	1	0.9995931	CCG	synonymous	NA	NA	NA	NA
M6_p20	chr7	13931730	12A2p6	cell line	sgMsh2	13931730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	985	0	0	NA	exonic	Sult2a4	stopgain	Sult2a4:NM_001101534:exon4:c.G507A:p.W169X	7qA1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9999977	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	15988161	12A2p6	cell line	sgMsh2	15988161	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.093	102	0	0	NA	exonic	Bicra	nonsynonymous SNV	Bicra:NM_001081418:exon5:c.G1430A:p.G477D	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.5532103	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	16865872	12A2p6	cell line	sgMsh2	16865872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	150	0	0	NA	exonic	Prkd2	synonymous SNV	"Prkd2:NM_178900:exon16:c.T2259C:p.N753N,Prkd2:NM_001252458:exon17:c.T2259C:p.N753N"	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9838767	ATG	synonymous	GAGGAC	12	GAGGACGAGGAC	NA
M6_p20	chr7	16894986	12A2p6	cell line	sgMsh2	16894986	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	142	0	0	NA	exonic	Gng8	nonsynonymous SNV	Gng8:NM_010320:exon3:c.G43A:p.V15M	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5479015	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	17048661	12A2p6	cell line	sgMsh2	17048661	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	81	0	0	NA	exonic	Hif3a	frameshift deletion	"Hif3a:NM_001162950:exon8:c.978delG:p.R327Gfs*13,Hif3a:NM_016868:exon8:c.972delG:p.R325Gfs*13"	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.770192477	NA	NA	GCC	frameshift	GCCCC	10	GCCCCGCCCC	-1
M6_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	473	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.422666603	3	0.9973904	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr7	17917286	12A2p6	cell line	sgMsh2	17917286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	296	0	0	NA	exonic	Gm5155	synonymous SNV	Gm5155:NM_001378684:exon9:c.T2721C:p.D907D	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	1.03E-09	ATA	synonymous	T	5	TTTTT	NA
M6_p20	chr7	18013057	12A2p6	cell line	sgMsh2	18013057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	117	0	0	NA	exonic	Ceacam13	stopgain	"Ceacam13:NM_027210:exon3:c.T434A:p.L145X,Ceacam13:NM_028171:exon3:c.T434A:p.L145X"	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9931269	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	18067508	12A2p6	cell line	sgMsh2	18067508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	266	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon2:c.A411G:p.E137E,Ceacam12:NM_001162524:exon2:c.A411G:p.E137E,Ceacam12:NM_026087:exon2:c.A411G:p.E137E"	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.999999	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	18069123	12A2p6	cell line	sgMsh2	18069123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	144	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon3:c.T453C:p.P151P,Ceacam12:NM_001162524:exon3:c.T453C:p.P151P,Ceacam12:NM_026087:exon3:c.T453C:p.P151P"	7qA2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.6268966	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr7	18612054	12A2p6	cell line	sgMsh2	18612054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	707	0	0	NA	exonic	Psg23	nonsynonymous SNV	Psg23:NM_020261:exon3:c.T715C:p.Y239H	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	18681013	12A2p6	cell line	sgMsh2	18681013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	475	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.T956C:p.I319T	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9999984	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.058	575	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.272385144	3	1	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Vardict	2	0.077	81	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9107797	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	19159634	12A2p6	cell line	sgMsh2	19159634	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.102	74	0	0	NA	exonic	Gipr	nonsynonymous SNV	Gipr:NM_001080815:exon12:c.A1021G:p.T341A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.7683414	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	19184910	12A2p6	cell line	sgMsh2	19184910	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	147	0	0	NA	exonic	Eml2	nonsynonymous SNV	"Eml2:NM_001162996:exon4:c.A284C:p.E95A,Eml2:NM_028153:exon4:c.A341C:p.E114A,Eml2:NM_001347582:exon7:c.A860C:p.E287A"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9989352	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	21272384	12A2p6	cell line	sgMsh2	21272384	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	337	0	0	NA	exonic	Vmn1r125	nonsynonymous SNV	Vmn1r125:NM_001166740:exon1:c.C206T:p.T69I	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	23541176	12A2p6	cell line	sgMsh2	23541176	A	G	SNV	Mutect2;MuSe;Vardict	3	0.092	513	0	0	NA	exonic	Vmn1r168	nonsynonymous SNV	Vmn1r168:NM_001166842:exon1:c.A457G:p.I153V	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.9909075	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	23866409	12A2p6	cell line	sgMsh2	23866409	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	431	0	0	NA	exonic	Vmn1r177	nonsynonymous SNV	Vmn1r177:NM_206872:exon1:c.T41A:p.V14E	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.6613218	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	23952621	12A2p6	cell line	sgMsh2	23952621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	293	0	0	NA	exonic	Vmn1r180	nonsynonymous SNV	Vmn1r180:NM_206869:exon1:c.A208G:p.T70A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.967436892	1	1.86E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	23952668	12A2p6	cell line	sgMsh2	23952668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	361	0	0	NA	exonic	Vmn1r180	synonymous SNV	Vmn1r180:NM_206869:exon1:c.T255C:p.T85T	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.9854838	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	24104956	12A2p6	cell line	sgMsh2	24104956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	95	0	0	NA	exonic	Zfp180	nonsynonymous SNV	"Zfp180:NM_172483:exon3:c.T274C:p.F92L,Zfp180:NM_001289637:exon4:c.T727C:p.F243L,Zfp180:NM_001045486:exon5:c.T799C:p.F267L,Zfp180:NM_001289640:exon5:c.T697C:p.F233L,Zfp180:NM_001289641:exon5:c.T619C:p.F207L,Zfp180:NM_001289634:exon6:c.T727C:p.F243L"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.8766957	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	24140735	12A2p6	cell line	sgMsh2	24140735	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.153	176	0	0	NA	exonic	Zfp235	nonsynonymous SNV	"Zfp235:NM_019941:exon5:c.A578G:p.N193S,Zfp235:NM_001360465:exon6:c.A788G:p.N263S"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.7669772	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	24502703	12A2p6	cell line	sgMsh2	24502703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	209	0	0	NA	exonic	Cadm4	synonymous SNV	Cadm4:NM_153112:exon8:c.T966C:p.P322P	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.9990967	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	24670441	12A2p6	cell line	sgMsh2	24670441	T	-	Deletion	Mutect2;Vardict	2	0.092	111	0	0	NA	exonic	Tex101	frameshift deletion	Tex101:NM_019981:exon3:c.97delA:p.T33fs*0	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.432059195	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr7	24760286	12A2p6	cell line	sgMsh2	24760286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	67	0	0	NA	exonic	Cd177	nonsynonymous SNV	Cd177:NM_026862:exon1:c.A1G:p.M1V	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5357443	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	24908411	12A2p6	cell line	sgMsh2	24908411	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	32	0	0	NA	exonic	Arhgef1	nonsynonymous SNV	"Arhgef1:NM_001130150:exon4:c.A206G:p.E69G,Arhgef1:NM_001130151:exon4:c.A206G:p.E69G,Arhgef1:NM_001130152:exon4:c.A206G:p.E69G,Arhgef1:NM_001130153:exon4:c.A206G:p.E69G,Arhgef1:NM_008488:exon4:c.A206G:p.E69G"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9401058	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25015880	12A2p6	cell line	sgMsh2	25015880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	90	0	0	NA	exonic	Grik5	synonymous SNV	"Grik5:NM_001360067:exon16:c.T1392C:p.A464A,Grik5:NM_008168:exon16:c.T1965C:p.A655A"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.999418	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	123	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999523	CGC	synonymous	C	5	CCCCC	NA
M6_p20	chr7	25271203	12A2p6	cell line	sgMsh2	25271203	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.175	22	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.T358C:p.Y120H	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.821851729	1	0.008310787	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25271985	12A2p6	cell line	sgMsh2	25271985	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.199	22	0	0	NA	exonic	Cic	synonymous SNV	Cic:NM_001302811:exon2:c.T1140A:p.A380A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.8148005	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	28	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9189909	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25295207	12A2p6	cell line	sgMsh2	25295207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	125	0	0	NA	exonic	Pafah1b3	nonsynonymous SNV	"Pafah1b3:NM_001357350:exon5:c.A581G:p.Y194C,Pafah1b3:NM_008776:exon6:c.A581G:p.Y194C"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.974376	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25307111	12A2p6	cell line	sgMsh2	25307111	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	0	0	NA	exonic	Tmem145	nonsynonymous SNV	Tmem145:NM_183311:exon2:c.T143C:p.F48S	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.999999	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25395550	12A2p6	cell line	sgMsh2	25395550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	102	0	0	NA	exonic	Lipe	synonymous SNV	Lipe:NM_010719:exon1:c.A60G:p.E20E	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.8936542	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	25538649	12A2p6	cell line	sgMsh2	25538649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	262	0	0	NA	exonic	Ceacam2	nonsynonymous SNV	"Ceacam2:NM_001113368:exon2:c.A349G:p.T117A,Ceacam2:NM_001113369:exon2:c.A349G:p.T117A,Ceacam2:NM_007543:exon2:c.A349G:p.T117A"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.8124806	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	28	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9189909	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	25733271	12A2p6	cell line	sgMsh2	25733271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	358	0	0	NA	exonic	Hnrnpul1	synonymous SNV	"Hnrnpul1:NM_001360789:exon9:c.T1065C:p.G355G,Hnrnpul1:NM_144922:exon9:c.T1365C:p.G455G"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.9578128	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	25761460	12A2p6	cell line	sgMsh2	25761460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	147	0	0	NA	exonic	Axl	nonsynonymous SNV	"Axl:NM_001190975:exon16:c.A1832G:p.K611R,Axl:NM_001190974:exon17:c.A2096G:p.K699R,Axl:NM_009465:exon18:c.A2123G:p.K708R"	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.722158	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	26080708	12A2p6	cell line	sgMsh2	26080708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	189	0	0	NA	exonic	Cyp2b13	synonymous SNV	Cyp2b13:NM_007813:exon2:c.T282C:p.A94A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999998	CTT	synonymous	T	5	TTTTT	NA
M6_p20	chr7	26382396	12A2p6	cell line	sgMsh2	26382396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	192	0	0	NA	exonic	Nlrp9c	nonsynonymous SNV	Nlrp9c:NM_001042612:exon4:c.A1904G:p.H635R	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9949827	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Vardict	2	0.031	207	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.145585163	3	1.05E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	27157598	12A2p6	cell line	sgMsh2	27157598	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	142	0	0	NA	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon7:c.A986G:p.Y329C	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.375703647	3	0.9786646	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	27233707	12A2p6	cell line	sgMsh2	27233707	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	74	0	0	NA	exonic	Coq8b	synonymous SNV	Coq8b:NM_133770:exon3:c.A111G:p.P37P	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9978784	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	27240043	12A2p6	cell line	sgMsh2	27240043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	149	0	0	NA	exonic	Coq8b	nonsynonymous SNV	Coq8b:NM_133770:exon7:c.A497G:p.N166S	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.8894527	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	27264930	12A2p6	cell line	sgMsh2	27264930	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	147	0	0	NA	exonic	Numbl	nonsynonymous SNV	Numbl:NM_010950:exon3:c.C164G:p.A55G	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6671283	GCC	nonsynonymous	AGCC	8	AGCCAGCC	NA
M6_p20	chr7	27516896	12A2p6	cell line	sgMsh2	27516896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	27	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.A1238C:p.E413A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9127268	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	39	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.6609481	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M6_p20	chr7	27528950	12A2p6	cell line	sgMsh2	27528950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	41	0	0	NA	exonic	Hipk4	nonsynonymous SNV	Hipk4:NM_001033315:exon3:c.T824C:p.V275A	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.970185	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	28093319	12A2p6	cell line	sgMsh2	28093319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	113	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon8:c.A2747G:p.N916S	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.5094032	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	28150766	12A2p6	cell line	sgMsh2	28150766	A	G	SNV	Mutect2;MuSe;Vardict	3	0.106	172	0	0	NA	exonic	9530053A07Rik	synonymous SNV	9530053A07Rik:NM_001164655:exon10:c.A3636G:p.S1212S	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9582147	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	28155429	12A2p6	cell line	sgMsh2	28155429	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	150	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon14:c.T5479C:p.C1827R	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9979776	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	176	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.216029597	3	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	28540915	12A2p6	cell line	sgMsh2	28540915	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	166	0	0	NA	exonic	Sycn	synonymous SNV	Sycn:NM_026716:exon1:c.C6A:p.S2S	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999703	CCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	164	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9986963	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	29045605	12A2p6	cell line	sgMsh2	29045605	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	121	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon82:c.T11601C:p.T3867T	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.446148081	2	7.39E-06	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	29061567	12A2p6	cell line	sgMsh2	29061567	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	56	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon65:c.A9629C:p.E3210A	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.8125593	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	29074854	12A2p6	cell line	sgMsh2	29074854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	55	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon44:c.T7154C:p.I2385T	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9902016	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	29087403	12A2p6	cell line	sgMsh2	29087403	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.143	53	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon33:c.A4764G:p.P1588P	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.7324681	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	26	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.09373808	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	29185076	12A2p6	cell line	sgMsh2	29185076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	356	0	0	NA	exonic	Catsperg1	nonsynonymous SNV	"Catsperg1:NM_001164658:exon24:c.T2678C:p.V893A,Catsperg1:NM_001368407:exon24:c.T2837C:p.V946A"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9951301	CAC	nonsynonymous	ACC	16	ACCACCACCCACCACC	NA
M6_p20	chr7	29225257	12A2p6	cell line	sgMsh2	29225257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	exonic	Kcnk6	nonsynonymous SNV	Kcnk6:NM_001033525:exon3:c.T721C:p.Y241H	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9907715	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	30057402	12A2p6	cell line	sgMsh2	30057402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	43	0	0	NA	exonic	Zfp82	nonsynonymous SNV	"Zfp82:NM_001252519:exon6:c.T254C:p.L85P,Zfp82:NM_177889:exon7:c.T344C:p.L115P"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.000870995	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	30190555	12A2p6	cell line	sgMsh2	30190555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	161	0	0	NA	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon8:c.T528C:p.A176A	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999595	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	30241548	12A2p6	cell line	sgMsh2	30241548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	37	0	0	NA	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon31:c.A3854G:p.N1285S	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9592453	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	30569294	12A2p6	cell line	sgMsh2	30569294	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	333	0	0	NA	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon37:c.T8036G:p.I2679S,Kmt2b:NM_029274:exon37:c.T8009G:p.I2670S"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999997	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	30645046	12A2p6	cell line	sgMsh2	30645046	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.333	13	0	0	NA	exonic	Rbm42	nonsynonymous SNV	Rbm42:NM_133693:exon7:c.T791C:p.V264A	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.008222426	CAC	nonsynonymous	CCACTG	13	CCACTGCCACTGC	NA
M6_p20	chr7	30736625	12A2p6	cell line	sgMsh2	30736625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	443	0	0	NA	exonic	Gapdhs	nonsynonymous SNV	"Gapdhs:NM_001290631:exon4:c.A539G:p.Y180C,Gapdhs:NM_008085:exon4:c.A533G:p.Y178C"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	2.47E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	30877545	12A2p6	cell line	sgMsh2	30877545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	253	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon3:c.T336C:p.C112C,Cd22:NM_001043317:exon5:c.T336C:p.C112C"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9942449	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	30922524	12A2p6	cell line	sgMsh2	30922524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	285	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.T236G:p.I79S	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9999946	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	34227208	12A2p6	cell line	sgMsh2	34227208	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	103	0	0	NA	exonic	Gpi1	synonymous SNV	Gpi1:NM_008155:exon4:c.G312T:p.R104R	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.9288955	TCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	50	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.8692839	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	261	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.915777641	1	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	265	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.995614666	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	118	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.305259214	3	0.9979662	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	35195149	12A2p6	cell line	sgMsh2	35195149	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	48	0	0	NA	exonic	Slc7a10	nonsynonymous SNV	Slc7a10:NM_017394:exon2:c.G232A:p.V78M	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9828611	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	35206103	12A2p6	cell line	sgMsh2	35206103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	190	0	0	NA	exonic	Lrp3	nonsynonymous SNV	Lrp3:NM_001024707:exon4:c.A257G:p.N86S	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.9929807	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	126	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9891663	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr7	35429212	12A2p6	cell line	sgMsh2	35429212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	118	0	0	NA	exonic	Cep89	stopgain	Cep89:NM_028120:exon16:c.A1789T:p.K597X	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6170363	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	130	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9994917	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M6_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	272	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9998644	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	125	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9932158	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	36771832	12A2p6	cell line	sgMsh2	36771832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	0	0	NA	exonic	Tshz3	stoploss	Tshz3:NM_172298:exon2:c.A3245G:p.X1082W	7qB2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9993158	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	38106650	12A2p6	cell line	sgMsh2	38106650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	196	0	0	NA	exonic	Ccne1	synonymous SNV	Ccne1:NM_007633:exon3:c.A48G:p.E16E	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.09841417	CTT	synonymous	CTT	9	CTTCTTCTT	NA
M6_p20	chr7	38522150	12A2p6	cell line	sgMsh2	38522150	C	T	SNV	Mutect2;Vardict	2	0.067	278	0	0	NA	exonic	Gm5591	nonsynonymous SNV	Gm5591:NM_001013810:exon2:c.G494A:p.G165E	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999995	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	39537148	12A2p6	cell line	sgMsh2	39537148	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	86	0	0	NA	exonic	Zfp619	nonsynonymous SNV	Zfp619:NM_001004139:exon4:c.A2601C:p.K867N	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.680962861	2	0.8196305	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	40993301	12A2p6	cell line	sgMsh2	40993301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	213	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G393A:p.L131L	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	2.87E-08	TGG	synonymous	G	5	GGGGG	NA
M6_p20	chr7	40994381	12A2p6	cell line	sgMsh2	40994381	G	A	SNV	Mutect2;Vardict	2	0.062	193	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G1473A:p.K491K	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999907	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr7	41044593	12A2p6	cell line	sgMsh2	41044593	G	A	SNV	Mutect2;Vardict	2	0.062	236	0	0	NA	exonic	Gm4884	nonsynonymous SNV	Gm4884:NM_183166:exon3:c.G1985A:p.R662H	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999994	CGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	41286204	12A2p6	cell line	sgMsh2	41286204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	335	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon2:c.A129G:p.P43P	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9999991	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	41837597	12A2p6	cell line	sgMsh2	41837597	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	442	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon6:c.A1873G:p.T625A	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.239511075	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	41862058	12A2p6	cell line	sgMsh2	41862058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	184	0	0	NA	exonic	Vmn2r58	synonymous SNV	Vmn2r58:NM_001105055:exon4:c.C1320T:p.F440F	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9963395	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	42047016	12A2p6	cell line	sgMsh2	42047016	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	98	0	0	NA	exonic	Vmn2r59	nonsynonymous SNV	Vmn2r59:NM_001105056:exon2:c.A301G:p.I101V	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9650043	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.054	719	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.253599962	3	1	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	110	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9881875	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	44361088	12A2p6	cell line	sgMsh2	44361088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	134	0	0	NA	exonic	1700008O03Rik	synonymous SNV	1700008O03Rik:NM_027049:exon5:c.T357C:p.N119N	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9857597	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	108	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.09819745	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	44542145	12A2p6	cell line	sgMsh2	44542145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	22	0	0	NA	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon4:c.T416C:p.I139T	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.8742441	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	44839809	12A2p6	cell line	sgMsh2	44839809	T	-	Deletion	Mutect2;Vardict	2	0.23	46	0	0	NA	exonic	Il4i1;Il4i1b	stopgain	"Il4i1:NM_010215:exon8:c.997delT:p.L333fs*0,Il4i1b:NM_001171024:exon9:c.1021delT:p.L341fs*0"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	CTT	nonsynonymous	NA	NA	NA	-1
M6_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	137	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	0.9593525	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	44901059	12A2p6	cell line	sgMsh2	44901059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	exonic	Ap2a1	synonymous SNV	"Ap2a1:NM_001077264:exon22:c.T2718C:p.G906G,Ap2a1:NM_007458:exon23:c.T2784C:p.G928G"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9724397	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	44905812	12A2p6	cell line	sgMsh2	44905812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	214	0	0	NA	exonic	Ap2a1	nonsynonymous SNV	"Ap2a1:NM_001077264:exon11:c.T1328C:p.V443A,Ap2a1:NM_007458:exon11:c.T1328C:p.V443A"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.999931	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45002309	12A2p6	cell line	sgMsh2	45002309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	71	0	0	NA	exonic	Irf3	nonsynonymous SNV	Irf3:NM_016849:exon8:c.T1223C:p.V408A	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.997297	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45088550	12A2p6	cell line	sgMsh2	45088550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	101	0	0	NA	exonic	Rcn3	synonymous SNV	"Rcn3:NM_001355045:exon3:c.G393A:p.G131G,Rcn3:NM_026555:exon3:c.G393A:p.G131G"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9683043	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	45304827	12A2p6	cell line	sgMsh2	45304827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	42	0	0	NA	exonic	Trpm4	nonsynonymous SNV	Trpm4:NM_175130:exon23:c.T3499C:p.Y1167H	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.6558817	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45360626	12A2p6	cell line	sgMsh2	45360626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	40	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon3:c.T252C:p.A84A	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9677517	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	45369292	12A2p6	cell line	sgMsh2	45369292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	157	0	0	NA	exonic	Lin7b	nonsynonymous SNV	Lin7b:NM_011698:exon4:c.T287C:p.L96P	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.999996	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45518619	12A2p6	cell line	sgMsh2	45518619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	116	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon5:c.T454C:p.S152P,Tulp2:NM_001290998:exon5:c.T418C:p.S140P,Tulp2:NM_001290999:exon5:c.T454C:p.S152P,Tulp2:NM_001045555:exon8:c.T790C:p.S264P,Tulp2:NM_008807:exon8:c.T790C:p.S264P"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.999929	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45588276	12A2p6	cell line	sgMsh2	45588276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	86	0	0	NA	exonic	Bcat2	nonsynonymous SNV	"Bcat2:NM_001243052:exon9:c.A845T:p.K282M,Bcat2:NM_009737:exon9:c.A965T:p.K322M"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9991957	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45618973	12A2p6	cell line	sgMsh2	45618973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	111	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.A185C:p.E62A,Fut1:NM_008051:exon2:c.A350C:p.E117A"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.9836834	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	141	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.994985	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45632407	12A2p6	cell line	sgMsh2	45632407	C	A	SNV	Mutect2;Vardict	2	0.11	29	0	0	NA	exonic	Rasip1	nonsynonymous SNV	Rasip1:NM_028544:exon5:c.C1333A:p.R445S	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.7023899	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45712131	12A2p6	cell line	sgMsh2	45712131	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	125	0	0	NA	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon5:c.G694A:p.V232M,Sphk2:NM_020011:exon5:c.G694A:p.V232M,Sphk2:NM_203280:exon6:c.G694A:p.V232M"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5770502	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	45834817	12A2p6	cell line	sgMsh2	45834817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	77	0	0	NA	exonic	Grin2d	synonymous SNV	Grin2d:NM_008172:exon10:c.C2253T:p.D751D	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.998335	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr7	45918149	12A2p6	cell line	sgMsh2	45918149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	40	0	0	NA	exonic	Emp3	nonsynonymous SNV	"Emp3:NM_001146346:exon5:c.T409C:p.Y137H,Emp3:NM_010129:exon5:c.T409C:p.Y137H"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.9677517	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	46033961	12A2p6	cell line	sgMsh2	46033961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	42	0	0	NA	exonic	Nomo1	nonsynonymous SNV	Nomo1:NM_153057:exon1:c.T130C:p.S44P	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9724397	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	46259908	12A2p6	cell line	sgMsh2	46259908	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	158	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon17:c.T1801C:p.S601P	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.6028898	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	46287691	12A2p6	cell line	sgMsh2	46287691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	201	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon36:c.C4823T:p.P1608L	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	0.999999	CCT	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr7	46662185	12A2p6	cell line	sgMsh2	46662185	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	51	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T132G:p.N44K,Tph1:NM_001276372:exon3:c.T132G:p.N44K,Tph1:NM_009414:exon3:c.T132G:p.N44K"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.8547994	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	46740785	12A2p6	cell line	sgMsh2	46740785	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	170	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.T288G:p.A96A,Saa1:NM_009117:exon4:c.T288G:p.A96A"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	0.9995319	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	46740812	12A2p6	cell line	sgMsh2	46740812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	176	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.C261T:p.F87F,Saa1:NM_009117:exon4:c.C261T:p.F87F"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9999237	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	132	0	0	NA	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7612841	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	47008133	12A2p6	cell line	sgMsh2	47008133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	28	0	0	NA	exonic	Spty2d1	nonsynonymous SNV	Spty2d1:NM_175318:exon1:c.T2C:p.M1T	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.864129	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	47235251	12A2p6	cell line	sgMsh2	47235251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	355	0	0	NA	exonic	Mrgpra9	nonsynonymous SNV	Mrgpra9:NM_001288801:exon2:c.A667G:p.T223A	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999996	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	47464589	12A2p6	cell line	sgMsh2	47464589	T	C	SNV	Mutect2;MuSe;Vardict	3	0.148	425	0	0	NA	exonic	Mrgpra2b	nonsynonymous SNV	"Mrgpra2b:NM_001382001:exon2:c.A397G:p.S133G,Mrgpra2b:NM_153101:exon2:c.A394G:p.S132G"	7qB3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.9980768	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	48875619	12A2p6	cell line	sgMsh2	48875619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	288	0	0	NA	exonic	E2f8	nonsynonymous SNV	"E2f8:NM_001013368:exon5:c.T604C:p.Y202H,E2f8:NM_001360812:exon5:c.T604C:p.Y202H"	7qB4	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.999921	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	51546678	12A2p6	cell line	sgMsh2	51546678	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	151	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon6:c.A314T:p.K105I,Ano5:NM_177694:exon7:c.A356T:p.K119I"	7qB4	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.995614666	1	0.9999949	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	55979873	12A2p6	cell line	sgMsh2	55979873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	exonic	Nipa1	nonsynonymous SNV	Nipa1:NM_153578:exon5:c.T491C:p.L164P	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.8250868	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	113	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.7872548	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	57408671	12A2p6	cell line	sgMsh2	57408671	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	68	0	0	NA	exonic	Gabra5	stopgain	"Gabra5:NM_001362161:exon10:c.T1328A:p.L443X,Gabra5:NM_176942:exon10:c.T1328A:p.L443X,Gabra5:NM_001362162:exon11:c.T1328A:p.L443X"	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.560592	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	330	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.27708144	3	1.27E-09	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	59276594	12A2p6	cell line	sgMsh2	59276594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	166	0	0	NA	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon4:c.A1119G:p.E373E,Ube3a:NM_011668:exon6:c.A1182G:p.E394E"	7qB5	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9975403	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	63727459	12A2p6	cell line	sgMsh2	63727459	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	216	0	0	NA	exonic	Otud7a	synonymous SNV	Otud7a:NM_130880:exon7:c.A598C:p.R200R	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.9414309	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	63757613	12A2p6	cell line	sgMsh2	63757613	A	-	Deletion	Strelka2;Vardict	2	0.1648	91	0	0	NA	exonic	Otud7a	frameshift deletion	Otud7a:NM_130880:exon14:c.1663delA:p.N556Tfs*65	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.773949514	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr7	65312728	12A2p6	cell line	sgMsh2	65312728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	85	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon20:c.G3460A:p.E1154K,Tjp1:NM_009386:exon21:c.G3700A:p.E1234K"	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9538851	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	66074375	12A2p6	cell line	sgMsh2	66074375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	329	0	0	NA	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon9:c.T763C:p.S255P	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9989678	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	66171343	12A2p6	cell line	sgMsh2	66171343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	141	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A1325G:p.Y442C	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.999986	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	546	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	3	0.7638314	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	67041823	12A2p6	cell line	sgMsh2	67041823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	113	0	0	NA	exonic	Adamts17	nonsynonymous SNV	Adamts17:NM_001033877:exon13:c.T1754C:p.V585A	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9698769	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	67692981	12A2p6	cell line	sgMsh2	67692981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	112	0	0	NA	exonic	Ttc23	synonymous SNV	Ttc23:NM_025905:exon7:c.A846G:p.T282T	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	8.69E-05	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	67736755	12A2p6	cell line	sgMsh2	67736755	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	54	0	0	NA	exonic	Synm	synonymous SNV	"Synm:NM_201639:exon4:c.A1158T:p.T386T,Synm:NM_207663:exon4:c.A1158T:p.T386T"	7qC	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9855227	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	74346684	12A2p6	cell line	sgMsh2	74346684	G	A	SNV	Mutect2;Vardict	2	0.15	31	0	0	NA	exonic	Slco3a1	nonsynonymous SNV	"Slco3a1:NM_001038643:exon4:c.C973T:p.P325S,Slco3a1:NM_023908:exon4:c.C973T:p.P325S"	7qD1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.5439906	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	75609145	12A2p6	cell line	sgMsh2	75609145	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	97	0	0	NA	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon7:c.A1516C:p.R506R	7qD1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9458375	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	75666561	12A2p6	cell line	sgMsh2	75666561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	149	0	0	NA	exonic	Akap13	synonymous SNV	Akap13:NM_029332:exon10:c.A4185G:p.K1395K	7qD1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	7.12E-07	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	78843901	12A2p6	cell line	sgMsh2	78843901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	107	0	0	NA	exonic	Det1	synonymous SNV	Det1:NM_029585:exon2:c.T354G:p.G118G	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.751407295	1	0.6101229	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	78919856	12A2p6	cell line	sgMsh2	78919856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	84	0	0	NA	exonic	Isg20	nonsynonymous SNV	Isg20:NM_001291220:exon4:c.C574T:p.P192S	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9464179	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	213	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9724522	CAG	synonymous	AGA	8	AGAAGAAG	NA
M6_p20	chr7	79089869	12A2p6	cell line	sgMsh2	79089869	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	155	0	0	NA	exonic	Acan	nonsynonymous SNV	"Acan:NM_001361500:exon6:c.T1024A:p.S342T,Acan:NM_007424:exon6:c.T1024A:p.S342T"	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9565885	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	79695307	12A2p6	cell line	sgMsh2	79695307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	46	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.C4919T:p.T1640I	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9799098	ACC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	157	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.286474031	3	0.9999307	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	80082188	12A2p6	cell line	sgMsh2	80082188	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	31	0	0	NA	exonic	Zfp710	nonsynonymous SNV	"Zfp710:NM_001145999:exon2:c.A1112T:p.H371L,Zfp710:NM_001146000:exon2:c.A1112T:p.H371L,Zfp710:NM_175433:exon2:c.A1112T:p.H371L"	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9353725	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	80328797	12A2p6	cell line	sgMsh2	80328797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.352	16	0	0	NA	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon14:c.T1902C:p.A634A	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.8084062	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	80359748	12A2p6	cell line	sgMsh2	80359748	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	86	0	0	NA	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon17:c.G2357A:p.R786Q	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	9.84E-08	CCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	80463793	12A2p6	cell line	sgMsh2	80463793	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	106	0	0	NA	exonic	Blm	nonsynonymous SNV	"Blm:NM_001042527:exon19:c.C3746A:p.A1249D,Blm:NM_007550:exon19:c.C3755A:p.A1252D"	7qD2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.65098	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	123	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5315639	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	80730246	12A2p6	cell line	sgMsh2	80730246	T	-	Deletion	Mutect2;Vardict	2	0.141	121	0	0	NA	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon27:c.3466delA:p.I1156Sfs*11	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.662177679	NA	NA	ATT	frameshift	NA	NA	NA	-1
M6_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	71	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.997297	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	81095526	12A2p6	cell line	sgMsh2	81095526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	164	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon8:c.G4021A:p.E1341K	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	0.9999977	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	77	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9631238	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	235	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.9609289	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	81351885	12A2p6	cell line	sgMsh2	81351885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	100	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon7:c.A1030G:p.R344G,Cpeb1:NM_001252525:exon9:c.A1273G:p.R425G,Cpeb1:NM_001252526:exon9:c.A1255G:p.R419G,Cpeb1:NM_007755:exon9:c.A1270G:p.R424G"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.986222075	1	0.9996001	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	168	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9991126	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	82634959	12A2p6	cell line	sgMsh2	82634959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	175	0	0	NA	exonic	Saxo2	synonymous SNV	Saxo2:NM_177894:exon3:c.A690G:p.K230K	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	6.34E-08	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	82683023	12A2p6	cell line	sgMsh2	82683023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	404	0	0	NA	exonic	Efl1	nonsynonymous SNV	"Efl1:NM_001159672:exon9:c.T874G:p.L292V,Efl1:NM_175317:exon9:c.T874G:p.L292V"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	9.68E-09	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	82867884	12A2p6	cell line	sgMsh2	82867884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	265	0	0	NA	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon1:c.G234A:p.P78P	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999489	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	82869546	12A2p6	cell line	sgMsh2	82869546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	86	0	0	NA	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon2:c.A1068G:p.V356V	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9833838	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	83618603	12A2p6	cell line	sgMsh2	83618603	A	-	Deletion	Mutect2;Vardict	2	0.135	53	0	0	NA	exonic	Tmc3	frameshift deletion	Tmc3:NM_177695:exon21:c.2274delA:p.K759Sfs*19	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.633999905	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr7	83618621	12A2p6	cell line	sgMsh2	83618621	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.132	43	0	0	NA	exonic	Tmc3	synonymous SNV	Tmc3:NM_177695:exon21:c.A2292G:p.Q764Q	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.619911018	2	0.7931463	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	84343763	12A2p6	cell line	sgMsh2	84343763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	127	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon5:c.A601G:p.T201A	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.9966056	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	84856838	12A2p6	cell line	sgMsh2	84856838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	369	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T474C:p.S158S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9999988	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	269	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.173762937	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	85222219	12A2p6	cell line	sgMsh2	85222219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	290	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon6:c.A1855G:p.S619G	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.9663012	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	85222432	12A2p6	cell line	sgMsh2	85222432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	442	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon6:c.G1642A:p.D548N	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9999978	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	85406987	12A2p6	cell line	sgMsh2	85406987	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	515	0	0	NA	exonic	Vmn2r69	stopgain	Vmn2r69:NM_001105182:exon6:c.C1942T:p.Q648X	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9977602	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	85561954	12A2p6	cell line	sgMsh2	85561954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	274	0	0	NA	exonic	Vmn2r70	synonymous SNV	Vmn2r70:NM_001384914:exon5:c.T1539C:p.P513P	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.9402831	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	85749164	12A2p6	cell line	sgMsh2	85749164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	175	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon5:c.T1592C:p.F531S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999994	AAA	nonsynonymous	ACAA	9	ACAAACAAA	NA
M6_p20	chr7	85871535	12A2p6	cell line	sgMsh2	85871535	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	620	0	0	NA	exonic	Vmn2r73	synonymous SNV	Vmn2r73:NM_001105186:exon3:c.G1224A:p.L408L	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9997325	GCA	synonymous	GCA	9	GCAGCAGCA	NA
M6_p20	chr7	85871998	12A2p6	cell line	sgMsh2	85871998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	99	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.A761G:p.N254S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.999719	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	86148696	12A2p6	cell line	sgMsh2	86148696	G	T	SNV	Mutect2;MuSe;Vardict	3	0.057	390	0	0	NA	exonic	Vmn2r75	synonymous SNV	Vmn2r75:NM_001102578:exon6:c.C1908A:p.S636S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.267688849	3	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	525	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	1.00E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M6_p20	chr7	86228859	12A2p6	cell line	sgMsh2	86228859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	47	0	0	NA	exonic	Vmn2r76	synonymous SNV	Vmn2r76:NM_001384930:exon4:c.T1320C:p.H440H	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.981443	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	168	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.5990227	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	86269480	12A2p6	cell line	sgMsh2	86269480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	285	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.T308C:p.L103S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.5853694	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	86306382	12A2p6	cell line	sgMsh2	86306382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	229	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.A730G:p.M244V	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.943955414	1	0.9999996	ATG	nonsynonymous	CAC	8	CACCACCA	NA
M6_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	429	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999999	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	86488673	12A2p6	cell line	sgMsh2	86488673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	239	0	0	NA	exonic	Olfr298	nonsynonymous SNV	Olfr298:NM_001011751:exon1:c.A877G:p.S293G	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9945744	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	86695231	12A2p6	cell line	sgMsh2	86695231	A	-	Deletion	Mutect2;Vardict	2	0.163	170	0	0	NA	exonic	Olfr292	frameshift deletion	Olfr292:NM_146620:exon2:c.774delA:p.K259Nfs*7	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.765496182	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6_p20	chr7	86731797	12A2p6	cell line	sgMsh2	86731797	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.105	85	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon13:c.T1368A:p.G456G,Folh1:NM_016770:exon14:c.T1467A:p.G489G"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.493111037	2	0.8493509	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	86756970	12A2p6	cell line	sgMsh2	86756970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	73	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon7:c.T894C:p.P298P,Folh1:NM_016770:exon7:c.T894C:p.P298P"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9977	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	86773254	12A2p6	cell line	sgMsh2	86773254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	201	0	0	NA	exonic	Folh1	synonymous SNV	"Folh1:NM_001159706:exon2:c.C174T:p.G58G,Folh1:NM_016770:exon2:c.C174T:p.G58G"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	TGC	synonymous	NA	NA	NA	NA
M6_p20	chr7	87602580	12A2p6	cell line	sgMsh2	87602580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	363	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon3:c.A37G:p.K13E,Grm5:NM_001143834:exon3:c.A37G:p.K13E"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	87603038	12A2p6	cell line	sgMsh2	87603038	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	272	0	0	NA	exonic	Grm5	synonymous SNV	"Grm5:NM_001081414:exon3:c.C495T:p.N165N,Grm5:NM_001143834:exon3:c.C495T:p.N165N"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9967061	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr7	88130070	12A2p6	cell line	sgMsh2	88130070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	29	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon10:c.A2717G:p.K906R,Grm5:NM_001143834:exon11:c.A2813G:p.K938R"	7qD3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.9248375	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	90427491	12A2p6	cell line	sgMsh2	90427491	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	49	0	0	NA	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.A908G:p.K303R	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.8642069	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	90427503	12A2p6	cell line	sgMsh2	90427503	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.12	46	0	0	NA	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.T920A:p.L307Q	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.853066	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	255	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9985039	TAA	synonymous	A	5	AAAAA	NA
M6_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	253	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9853705	ATT	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr7	92624080	12A2p6	cell line	sgMsh2	92624080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	88	0	0	NA	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon4:c.T338C:p.I113T	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9993158	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	96843077	12A2p6	cell line	sgMsh2	96843077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	162	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon20:c.A3220G:p.S1074G,Tenm4:NM_011858:exon20:c.A3109G:p.S1037G,Tenm4:NM_001310762:exon21:c.A3217G:p.S1073G"	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.7279133	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	198	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9974133	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	97499576	12A2p6	cell line	sgMsh2	97499576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	307	0	0	NA	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon6:c.T661C:p.L221L,Ints4:NM_027256:exon6:c.T688C:p.L230L"	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.727925817	2	0.7845219	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	77	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.8696792	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	98352168	12A2p6	cell line	sgMsh2	98352168	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.C955T:p.R319C,Tsku:NM_001168539:exon2:c.C955T:p.R319C,Tsku:NM_001168540:exon3:c.C955T:p.R319C,Tsku:NM_001168541:exon4:c.C955T:p.R319C"	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	2	1	1	0.9302904	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	98477241	12A2p6	cell line	sgMsh2	98477241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	93	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon19:c.C3303A:p.R1101R	7qE1	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9761468	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	99839870	12A2p6	cell line	sgMsh2	99839870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	73	0	0	NA	exonic	Spcs2	nonsynonymous SNV	Spcs2:NM_025668:exon5:c.T508C:p.Y170H	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9977	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	100029349	12A2p6	cell line	sgMsh2	100029349	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	75	0	0	NA	exonic	Chrdl2	nonsynonymous SNV	"Chrdl2:NM_001291320:exon9:c.A1127C:p.K376T,Chrdl2:NM_133709:exon9:c.A1106C:p.K369T"	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9980431	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	100344993	12A2p6	cell line	sgMsh2	100344993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	211	0	0	NA	exonic	Ppme1	nonsynonymous SNV	Ppme1:NM_028292:exon6:c.T512C:p.V171A	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9844156	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.113	92	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9557007	CAG	synonymous	CAG	8	CAGCAGCA	NA
M6_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	65	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.8876348	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	100881196	12A2p6	cell line	sgMsh2	100881196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	28	0	0	NA	exonic	Arhgef17	nonsynonymous SNV	Arhgef17:NM_001081116:exon11:c.A4382C:p.E1461A	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9189909	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	101999278	12A2p6	cell line	sgMsh2	101999278	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	17	0	0	NA	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon14:c.A2215C:p.S739R	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.821154	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102011047	12A2p6	cell line	sgMsh2	102011047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.086	112	0	0	NA	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon19:c.A5377G:p.T1793A	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.8438388	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102012774	12A2p6	cell line	sgMsh2	102012774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	66	0	0	NA	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon21:c.G5671A:p.D1891N	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.7159858	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	141	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9954286	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102240087	12A2p6	cell line	sgMsh2	102240087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.T158A:p.L53Q	7qE2	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9952975	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	189	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.8937849	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	150	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.9737355	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	102605185	12A2p6	cell line	sgMsh2	102605185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	256	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T830C:p.L277P	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9999984	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	190	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9998817	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102640431	12A2p6	cell line	sgMsh2	102640431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	200	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.T184C:p.Y62H	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.09418916	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102774994	12A2p6	cell line	sgMsh2	102774994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	238	0	0	NA	exonic	Olfr561	nonsynonymous SNV	Olfr561:NM_147092:exon1:c.G469A:p.A157T	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102804243	12A2p6	cell line	sgMsh2	102804243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	490	0	0	NA	exonic	Olfr564	nonsynonymous SNV	Olfr564:NM_146359:exon1:c.T764C:p.I255T	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9999979	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	232	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.9999686	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103219940	12A2p6	cell line	sgMsh2	103219940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	248	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G221A:p.G74D	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.704444339	2	0.9451212	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103338948	12A2p6	cell line	sgMsh2	103338948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	80	0	0	NA	exonic	Olfr599	nonsynonymous SNV	Olfr599:NM_146731:exon1:c.A893G:p.K298R	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9986935	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103383210	12A2p6	cell line	sgMsh2	103383210	C	A	SNV	Mutect2;MuSe;Vardict	3	0.148	212	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.G791T:p.R264M	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.9541855	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Vardict	2	0.038	591	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.178459233	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103418589	12A2p6	cell line	sgMsh2	103418589	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	308	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.C1090T:p.H364Y	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9999993	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103442844	12A2p6	cell line	sgMsh2	103442844	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	614	0	0	NA	exonic	Olfr605	nonsynonymous SNV	Olfr605:NM_001011854:exon1:c.A278G:p.D93G	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9998833	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103451350	12A2p6	cell line	sgMsh2	103451350	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	224	0	0	NA	exonic	Olfr606	synonymous SNV	Olfr606:NM_147094:exon1:c.A12T:p.S4S	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.9179148	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	207	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	6.01E-09	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr7	103506837	12A2p6	cell line	sgMsh2	103506837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	110	0	0	NA	exonic	Olfr610	synonymous SNV	Olfr610:NM_147081:exon1:c.T108C:p.I36I	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9990547	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	103597381	12A2p6	cell line	sgMsh2	103597381	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	270	0	0	NA	exonic	Olfr618	stopgain	Olfr618:NM_147047:exon1:c.G64T:p.G22X	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.9998887	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103597434	12A2p6	cell line	sgMsh2	103597434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	335	0	0	NA	exonic	Olfr618	nonsynonymous SNV	Olfr618:NM_147047:exon1:c.A117G:p.I39M	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9999471	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103611559	12A2p6	cell line	sgMsh2	103611559	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	466	0	0	NA	exonic	Olfr620	nonsynonymous SNV	Olfr620:NM_146812:exon1:c.C793T:p.R265C	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	1.27E-09	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103841781	12A2p6	cell line	sgMsh2	103841781	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	181	0	0	NA	exonic	Hbb-bh1	nonsynonymous SNV	Hbb-bh1:NM_008219:exon3:c.G415A:p.A139T	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999996	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103881433	12A2p6	cell line	sgMsh2	103881433	A	G	SNV	Mutect2;Vardict	2	0.093	704	0	0	NA	exonic	Olfr66	nonsynonymous SNV	Olfr66:NM_013618:exon1:c.T809C:p.V270A	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.9956925	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103906510	12A2p6	cell line	sgMsh2	103906510	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	396	0	0	NA	exonic	Olfr65	nonsynonymous SNV	Olfr65:NM_013616:exon1:c.G70T:p.A24S	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9999992	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	103947175	12A2p6	cell line	sgMsh2	103947175	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	249	0	0	NA	exonic	Olfr633	nonsynonymous SNV	Olfr633:NM_146354:exon1:c.T608C:p.V203A	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999476	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104003606	12A2p6	cell line	sgMsh2	104003606	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	261	0	0	NA	exonic	Olfr638	synonymous SNV	Olfr638:NM_147120:exon1:c.A348G:p.S116S	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.9980924	CAT	synonymous	TCAT	8	TCATTCAT	NA
M6_p20	chr7	104069002	12A2p6	cell line	sgMsh2	104069002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	73	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.G28T:p.G10W	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.6486128	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104106545	12A2p6	cell line	sgMsh2	104106545	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	248	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.A265T:p.I89F	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.6117763	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104107148	12A2p6	cell line	sgMsh2	104107148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.T868C:p.Y290H	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.925170232	1	0.9997397	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104128695	12A2p6	cell line	sgMsh2	104128695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	118	0	0	NA	exonic	Ubqln5	synonymous SNV	Ubqln5:NM_027634:exon1:c.T921C:p.P307P	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	0.615214723	2	0.989387	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	104141090	12A2p6	cell line	sgMsh2	104141090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.T1861C:p.F621L,Ubqln3:NM_198623:exon2:c.T1792C:p.F598L"	7qE3	chr7-10052711-104249879	4	2	2	0.93	4.367554902	NA	1	1	1	0.9939481	AAG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr7	104265854	12A2p6	cell line	sgMsh2	104265854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	156	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon8:c.A1007G:p.N336S	7qE3	chr7-104259115-104329817	2	NA	NA	0.93	4.367554902	NA	NA	1	1	0.9999972	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104336164	12A2p6	cell line	sgMsh2	104336164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	294	0	0	NA	exonic	Trim34b	synonymous SNV	Trim34b:NM_001243916:exon7:c.T1005C:p.N335N	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.892296163	1	0.9999992	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Vardict	2	0.045	258	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.211333302	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr7	104473250	12A2p6	cell line	sgMsh2	104473250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	108	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon5:c.T353C:p.I118T,Trim30d:NM_199146:exon6:c.T803C:p.I268T"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998644	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	205	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9990023	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104553663	12A2p6	cell line	sgMsh2	104553663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	285	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.T743C:p.I248T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	4.52E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104588061	12A2p6	cell line	sgMsh2	104588061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	182	0	0	NA	exonic	Olfr654	nonsynonymous SNV	Olfr654:NM_146379:exon1:c.T307G:p.F103V	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9946347	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104596668	12A2p6	cell line	sgMsh2	104596668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	242	0	0	NA	exonic	Olfr655	nonsynonymous SNV	Olfr655:NM_146820:exon1:c.G512T:p.R171M	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	3.64E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104635816	12A2p6	cell line	sgMsh2	104635816	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	367	0	0	NA	exonic	Olfr657	frameshift deletion	Olfr657:NM_146312:exon1:c.141delA:p.N48Tfs*13	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.756103591	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	387	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9999994	TCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	104636454	12A2p6	cell line	sgMsh2	104636454	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	391	0	0	NA	exonic	Olfr657	nonsynonymous SNV	Olfr657:NM_146312:exon1:c.T779C:p.V260A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.9134977	GTT	nonsynonymous	TGT	9	TGTTGTTGT	NA
M6_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	664	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9999441	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	104860793	12A2p6	cell line	sgMsh2	104860793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	533	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon3:c.T604C:p.S202P	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9981791	CTC	nonsynonymous	TCAGC	14	TCAGCTCAGCTCAG	NA
M6_p20	chr7	104939177	12A2p6	cell line	sgMsh2	104939177	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	508	0	0	NA	exonic	Olfr669	nonsynonymous SNV	Olfr669:NM_147043:exon1:c.C650T:p.S217F	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.737318408	2	0.6776926	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	105069699	12A2p6	cell line	sgMsh2	105069699	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	202	0	0	NA	exonic	Olfr678	synonymous SNV	Olfr678:NM_146758:exon1:c.A231G:p.T77T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999687	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	105086511	12A2p6	cell line	sgMsh2	105086511	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	422	0	0	NA	exonic	Olfr679	nonsynonymous SNV	Olfr679:NM_147044:exon1:c.C794T:p.T265I	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999998	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	105329402	12A2p6	cell line	sgMsh2	105329402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	205	0	0	NA	exonic	Olfr690	synonymous SNV	Olfr690:NM_020290:exon1:c.T789C:p.T263T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9998665	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	105337497	12A2p6	cell line	sgMsh2	105337497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	201	0	0	NA	exonic	Olfr691	nonsynonymous SNV	Olfr691:NM_147061:exon1:c.T218C:p.I73T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	108	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9591952	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	108	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6_p20	chr7	105720931	12A2p6	cell line	sgMsh2	105720931	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.116	68	0	0	NA	exonic	Dnhd1	nonsynonymous SNV	Dnhd1:NM_001370803:exon43:c.T13559C:p.V4520A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.544770289	2	0.9303323	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	105721722	12A2p6	cell line	sgMsh2	105721722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	151	0	0	NA	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon44:c.A14205G:p.T4735T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999958	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr7	105734947	12A2p6	cell line	sgMsh2	105734947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	68	0	0	NA	exonic	Rrp8	nonsynonymous SNV	"Rrp8:NM_025897:exon2:c.T209C:p.V70A,Rrp8:NM_133951:exon2:c.T347C:p.V116A"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	0.9813828	TAC	nonsynonymous	CCT	16	CCTCCTCCTCCTCCTC	NA
M6_p20	chr7	105898861	12A2p6	cell line	sgMsh2	105898861	A	G	SNV	Mutect2;MuSe;Vardict	3	0.141	371	0	0	NA	exonic	Gm4070;Gvin1	synonymous SNV	"Gvin1:NM_001039160:exon2:c.T4983C:p.S1661S,Gm4070:NM_001243040:exon2:c.T4983C:p.S1661S,Gm4070:NM_001243039:exon4:c.T4983C:p.S1661S,Gvin1:NM_029000:exon4:c.T4983C:p.S1661S"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.662177679	2	0.9999065	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	106601234	12A2p6	cell line	sgMsh2	106601234	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	108	0	0	NA	exonic	Gm1966	frameshift deletion	"Gm1966:NM_001277179:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277180:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277181:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277182:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277183:exon6:c.2802delA:p.K934Nfs*4"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.896992458	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6_p20	chr7	106603495	12A2p6	cell line	sgMsh2	106603495	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	221	0	0	NA	exonic	Gm1966	nonsynonymous SNV	"Gm1966:NM_001277179:exon3:c.C541A:p.L181M,Gm1966:NM_001277180:exon3:c.C541A:p.L181M,Gm1966:NM_001277181:exon4:c.C541A:p.L181M,Gm1966:NM_001277182:exon4:c.C541A:p.L181M,Gm1966:NM_001277183:exon6:c.C541A:p.L181M"	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9969439	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	106677976	12A2p6	cell line	sgMsh2	106677976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	264	0	0	NA	exonic	Olfr693	nonsynonymous SNV	Olfr693:NM_146453:exon1:c.A509G:p.K170R	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9999757	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	106790217	12A2p6	cell line	sgMsh2	106790217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	142	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.A783G:p.L261L	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	0.96341	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	256	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	0.999999	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr7	106886682	12A2p6	cell line	sgMsh2	106886682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	436	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.T134C:p.L45P	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9999912	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	106972115	12A2p6	cell line	sgMsh2	106972115	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	165	0	0	NA	exonic	Olfr711	synonymous SNV	Olfr711:NM_147035:exon3:c.C228T:p.V76V	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.535377698	2	0.9953288	TGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	252	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.27708144	3	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	107823332	12A2p6	cell line	sgMsh2	107823332	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	813	0	0	NA	exonic	Olfr469	nonsynonymous SNV	Olfr469:NM_146426:exon1:c.C136A:p.L46I	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	1.43E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	107845023	12A2p6	cell line	sgMsh2	107845023	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	998	0	0	NA	exonic	Olfr470	synonymous SNV	Olfr470:NM_146425:exon1:c.C709A:p.R237R	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	1.00E-09	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	107902860	12A2p6	cell line	sgMsh2	107902860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	515	0	0	NA	exonic	Olfr472	nonsynonymous SNV	Olfr472:NM_146774:exon1:c.T142G:p.L48V	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9999989	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	657	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	1.00E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M6_p20	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	504	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.169066641	3	1	AAA	synonymous	AATG	8	AATGAATG	NA
M6_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	282	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9988473	ATG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr7	108094849	12A2p6	cell line	sgMsh2	108094849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	525	0	0	NA	exonic	Olfr482	synonymous SNV	Olfr482:NM_146733:exon1:c.C720T:p.A240A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9995768	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	142	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.998211	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108159177	12A2p6	cell line	sgMsh2	108159177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	338	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T695C:p.L232P	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5150834	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	327	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.9980074	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108286369	12A2p6	cell line	sgMsh2	108286369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	407	0	0	NA	exonic	Olfr490	synonymous SNV	Olfr490:NM_146498:exon1:c.T756C:p.T252T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	678	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108317735	12A2p6	cell line	sgMsh2	108317735	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	342	0	0	NA	exonic	Olfr491	synonymous SNV	Olfr491:NM_146736:exon1:c.G840T:p.V280V	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.23481478	3	1.00E-09	TGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	108323552	12A2p6	cell line	sgMsh2	108323552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	807	0	0	NA	exonic	Olfr492	synonymous SNV	Olfr492:NM_146497:exon1:c.T123C:p.T41T	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	1	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	108465962	12A2p6	cell line	sgMsh2	108465962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	411	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A637G:p.T213A	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9959641	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108466294	12A2p6	cell line	sgMsh2	108466294	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	405	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.C969A:p.H323Q	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	2.85E-08	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108523091	12A2p6	cell line	sgMsh2	108523091	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.148	402	0	0	NA	exonic	Olfr502	frameshift deletion	Olfr502:NM_146739:exon1:c.858delC:p.M287Cfs*1	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.695051748	NA	NA	TGG	frameshift	NA	NA	NA	-1
M6_p20	chr7	108565457	12A2p6	cell line	sgMsh2	108565457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	379	0	0	NA	exonic	Olfr504	nonsynonymous SNV	Olfr504:NM_001011858:exon1:c.T337C:p.F113L	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	460	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	2.37E-09	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	108755711	12A2p6	cell line	sgMsh2	108755711	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	123	0	0	NA	exonic	Olfr513	nonsynonymous SNV	Olfr513:NM_146723:exon1:c.A854G:p.N285S	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9756244	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	110489358	12A2p6	cell line	sgMsh2	110489358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	73	0	0	NA	exonic	Sbf2	nonsynonymous SNV	Sbf2:NM_177324:exon3:c.T145C:p.F49L	7qE3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9960884	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	114	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9872592	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	112876204	12A2p6	cell line	sgMsh2	112876204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	156	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon9:c.T829C:p.F277L,Tead1:NM_009346:exon10:c.T841C:p.F281L,Tead1:NM_001166584:exon11:c.T904C:p.F302L"	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5854392	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	112894450	12A2p6	cell line	sgMsh2	112894450	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	158	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon11:c.T1153A:p.F385I,Tead1:NM_009346:exon12:c.T1165A:p.F389I,Tead1:NM_001166584:exon13:c.T1228A:p.F410I"	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9209048	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	161	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.99908	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	114526788	12A2p6	cell line	sgMsh2	114526788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	330	0	0	NA	exonic	Pde3b	synonymous SNV	Pde3b:NM_011055:exon12:c.T2256C:p.D752D	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9999959	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr7	116351909	12A2p6	cell line	sgMsh2	116351909	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	159	0	0	NA	exonic	Pik3c2a	nonsynonymous SNV	Pik3c2a:NM_011083:exon24:c.G3740A:p.G1247D	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.8804354	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	117634620	12A2p6	cell line	sgMsh2	117634620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	48	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon7:c.T1373C:p.L458P	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.901688754	1	0.9284362	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	118203127	12A2p6	cell line	sgMsh2	118203127	A	G	SNV	Mutect2;Vardict	2	0.062	77	0	0	NA	exonic	Smg1	synonymous SNV	Smg1:NM_001031814:exon7:c.T819C:p.L273L	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9854846	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	118490439	12A2p6	cell line	sgMsh2	118490439	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	55	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.G896T:p.G299V	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9902016	GCC	nonsynonymous	GCA	8	GCAGCAGC	NA
M6_p20	chr7	118552817	12A2p6	cell line	sgMsh2	118552817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	74	0	0	NA	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon7:c.A880G:p.I294V	7qF1	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.765496182	1	0.6656521	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	118722185	12A2p6	cell line	sgMsh2	118722185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	87	0	0	NA	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon5:c.T1062C:p.S354S,Ccp110:NM_001360794:exon5:c.T1062C:p.S354S,Ccp110:NM_182995:exon5:c.T1062C:p.S354S"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9992582	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr7	118724564	12A2p6	cell line	sgMsh2	118724564	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	142	0	0	NA	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon6:c.G2022A:p.R674R,Ccp110:NM_001360794:exon6:c.G2025A:p.R675R,Ccp110:NM_182995:exon6:c.G2025A:p.R675R"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9983326	GGG	synonymous	GGAGCA	23	GAGCAGGAGAGGGAGCAGGAGCA	NA
M6_p20	chr7	118760190	12A2p6	cell line	sgMsh2	118760190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	382	0	0	NA	exonic	Vps35l	synonymous SNV	Vps35l:NM_027815:exon8:c.T753C:p.V251V	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9941264	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr7	119452931	12A2p6	cell line	sgMsh2	119452931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	153	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon4:c.T550C:p.C184R	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.9752016	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	119454281	12A2p6	cell line	sgMsh2	119454281	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	141	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon3:c.G447T:p.K149N	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.9975586	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	119498011	12A2p6	cell line	sgMsh2	119498011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	120	0	0	NA	exonic	Pdilt	nonsynonymous SNV	Pdilt:NM_027943:exon7:c.T856C:p.Y286H	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999486	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	184	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	0.9997775	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	119717011	12A2p6	cell line	sgMsh2	119717011	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	168	0	0	NA	exonic	Thumpd1	synonymous SNV	Thumpd1:NM_145585:exon5:c.G714A:p.T238T	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.930681	CCG	synonymous	NA	NA	NA	NA
M6_p20	chr7	119785795	12A2p6	cell line	sgMsh2	119785795	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	249	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon9:c.C798A:p.A266A,Eri2:NM_027698:exon9:c.C1482A:p.A494A"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9999952	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	294	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.272385144	3	2.90E-09	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	119928814	12A2p6	cell line	sgMsh2	119928814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	109	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon58:c.T11411C:p.L3804P	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.954016	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	120021009	12A2p6	cell line	sgMsh2	120021009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	267	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon33:c.T4663C:p.Y1555H	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9963538	TAG	nonsynonymous	CATAGT	12	CATAGTCATAGT	NA
M6_p20	chr7	120139766	12A2p6	cell line	sgMsh2	120139766	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	253	0	0	NA	exonic	Zp2	nonsynonymous SNV	"Zp2:NM_001374631:exon7:c.A597C:p.Q199H,Zp2:NM_011775:exon7:c.A597C:p.Q199H"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999206	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	120403069	12A2p6	cell line	sgMsh2	120403069	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	224	0	0	NA	exonic	Abca15	nonsynonymous SNV	Abca15:NM_177213:exon29:c.A4804G:p.T1602A	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.7737722	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	120799594	12A2p6	cell line	sgMsh2	120799594	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	102	0	0	NA	exonic	Vwa3a	nonsynonymous SNV	Vwa3a:NM_177697:exon29:c.A2966C:p.Q989P	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9568883	CAG	nonsynonymous	GTGG	8	GTGGGTGG	NA
M6_p20	chr7	121648566	12A2p6	cell line	sgMsh2	121648566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	57	0	0	NA	exonic	Usp31	nonsynonymous SNV	Usp31:NM_001033173:exon16:c.A3653G:p.K1218R	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.8717859	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	122171703	12A2p6	cell line	sgMsh2	122171703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	91	0	0	NA	exonic	Ern2	synonymous SNV	"Ern2:NM_001316689:exon18:c.A2166G:p.S722S,Ern2:NM_012016:exon18:c.A2169G:p.S723S"	7qF2	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.90638505	1	0.9922066	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	123175446	12A2p6	cell line	sgMsh2	123175446	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	107	0	0	NA	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon9:c.G3504A:p.R1168R	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.699748043	2	0.7846122	GGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	123176843	12A2p6	cell line	sgMsh2	123176843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	189	0	0	NA	exonic	Tnrc6a	nonsynonymous SNV	Tnrc6a:NM_144925:exon10:c.A3536G:p.N1179S	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.953348005	1	0.9999969	AAC	nonsynonymous	AAAC	10	AAACAAACAA	NA
M6_p20	chr7	125663465	12A2p6	cell line	sgMsh2	125663465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	167	0	0	NA	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon20:c.A3221G:p.E1074G	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9652316	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	125669638	12A2p6	cell line	sgMsh2	125669638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	162	0	0	NA	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon14:c.A2295G:p.K765K	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9996716	TTT	synonymous	T	5	TTTTT	NA
M6_p20	chr7	125677390	12A2p6	cell line	sgMsh2	125677390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	20	0	0	NA	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon9:c.A1478G:p.K493R	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.854985	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	126367949	12A2p6	cell line	sgMsh2	126367949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	139	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon8:c.T432G:p.S144R	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999752	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	126572480	12A2p6	cell line	sgMsh2	126572480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	94	0	0	NA	exonic	Cln3	synonymous SNV	"Cln3:NM_001329789:exon13:c.T1116C:p.I372I,Cln3:NM_009907:exon14:c.T1188C:p.I396I,Cln3:NM_001146311:exon17:c.T1188C:p.I396I"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9829888	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	126781902	12A2p6	cell line	sgMsh2	126781902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	27	0	0	NA	exonic	Tbx6	nonsynonymous SNV	Tbx6:NM_011538:exon2:c.A308G:p.E103G	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9127268	GAA	nonsynonymous	GGAA	8	GGAAGGAA	NA
M6_p20	chr7	126785135	12A2p6	cell line	sgMsh2	126785135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	90	0	0	NA	exonic	Tbx6	synonymous SNV	Tbx6:NM_011538:exon8:c.T1278C:p.G426G	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.999418	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	126786500	12A2p6	cell line	sgMsh2	126786500	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	98	0	0	NA	exonic	Ppp4c	synonymous SNV	"Ppp4c:NM_001360464:exon7:c.C666T:p.V222V,Ppp4c:NM_019674:exon8:c.C666T:p.V222V"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9811858	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	127236362	12A2p6	cell line	sgMsh2	127236362	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	50	0	0	NA	exonic	Zfp553	nonsynonymous SNV	"Zfp553:NM_001360912:exon2:c.A1088G:p.Y363C,Zfp553:NM_146201:exon2:c.A1088G:p.Y363C"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	2	1	1	0.9853852	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	45	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.812296	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	127879144	12A2p6	cell line	sgMsh2	127879144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	70	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A492G:p.Q164Q	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.09856992	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Vardict	2	0.125	49	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.09196079	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	127889628	12A2p6	cell line	sgMsh2	127889628	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	138	0	0	NA	exonic	Prss53	synonymous SNV	Prss53:NM_001081268:exon3:c.T93A:p.R31R	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9956283	CAC	synonymous	AGGGCC	13	AGGGCCAGGGCCA	NA
M6_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	216	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9995464	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	128114736	12A2p6	cell line	sgMsh2	128114736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	427	0	0	NA	exonic	Itgam	synonymous SNV	"Itgam:NM_001082960:exon23:c.T2715C:p.S905S,Itgam:NM_008401:exon23:c.T2712C:p.S904S"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9990067	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr7	128136127	12A2p6	cell line	sgMsh2	128136127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	91	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon13:c.T1453C:p.Y485H	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	2	1	1	0.9994632	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Vardict	2	0.087	80	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	7.62E-05	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	128276342	12A2p6	cell line	sgMsh2	128276342	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.11	65	0	0	NA	exonic	Rusf1	nonsynonymous SNV	"Rusf1:NM_001360882:exon6:c.C319A:p.L107I,Rusf1:NM_145590:exon8:c.C838A:p.L280I"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.878224	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	119	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9873823	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	128444848	12A2p6	cell line	sgMsh2	128444848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	273	0	0	NA	exonic	Tial1	nonsynonymous SNV	"Tial1:NM_001347640:exon8:c.A616G:p.T206A,Tial1:NM_009383:exon8:c.A667G:p.T223A,Tial1:NM_001347641:exon9:c.A499G:p.T167A"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9999192	GTA	nonsynonymous	ACAGT	10	ACAGTACAGT	NA
M6_p20	chr7	128524005	12A2p6	cell line	sgMsh2	128524005	G	T	SNV	Mutect2;Strelka2	2	0.182	17	0	0	NA	exonic	Bag3	synonymous SNV	Bag3:NM_013863:exon1:c.G147T:p.T49T	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.6731496	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr7	128545788	12A2p6	cell line	sgMsh2	128545788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	58	0	0	NA	exonic	Bag3	nonsynonymous SNV	Bag3:NM_013863:exon4:c.A1126G:p.I376V	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9922977	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	129631238	12A2p6	cell line	sgMsh2	129631238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	285	0	0	NA	exonic	Wdr11	nonsynonymous SNV	Wdr11:NM_172255:exon24:c.A2993G:p.K998R	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	0.7926748	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	130626370	12A2p6	cell line	sgMsh2	130626370	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	142	0	0	NA	exonic	Tacc2	nonsynonymous SNV	Tacc2:NM_001004468:exon3:c.C4784T:p.A1595V	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	6.81E-08	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	130743554	12A2p6	cell line	sgMsh2	130743554	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.134	54	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_021314:exon10:c.A2171T:p.E724V,Tacc2:NM_206856:exon13:c.A2501T:p.E834V,Tacc2:NM_001004468:exon14:c.A7700T:p.E2567V"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.8426315	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	131058208	12A2p6	cell line	sgMsh2	131058208	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	342	0	0	NA	exonic	Dmbt1	synonymous SNV	"Dmbt1:NM_007769:exon12:c.T1155G:p.S385S,Dmbt1:NM_001347632:exon13:c.T1188G:p.S396S"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9998952	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	180	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.5633122	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	131318094	12A2p6	cell line	sgMsh2	131318094	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	65	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon3:c.A292G:p.T98A	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.878224	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	132982489	12A2p6	cell line	sgMsh2	132982489	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	75	0	0	NA	exonic	Zranb1	nonsynonymous SNV	"Zranb1:NM_207302:exon8:c.C1667T:p.T556I,Zranb1:NM_001362198:exon9:c.C1745T:p.T582I,Zranb1:NM_001362199:exon9:c.C1745T:p.T582I"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.00098437	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	132991616	12A2p6	cell line	sgMsh2	132991616	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	225	0	0	NA	exonic	Ctbp2	nonsynonymous SNV	"Ctbp2:NM_001170744:exon5:c.C2355G:p.H785Q,Ctbp2:NM_001347623:exon5:c.C651G:p.H217Q,Ctbp2:NM_009980:exon7:c.C726G:p.H242Q"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.366311056	3	0.9992909	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	133667558	12A2p6	cell line	sgMsh2	133667558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	0	0	NA	exonic	Edrf1	nonsynonymous SNV	Edrf1:NM_178115:exon24:c.A3415G:p.T1139A	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.643392496	2	0.9252872	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	133721362	12A2p6	cell line	sgMsh2	133721362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	139	0	0	NA	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon11:c.A1702G:p.N568D,Dhx32:NM_001286030:exon12:c.A2122G:p.N708D,Dhx32:NM_001286031:exon12:c.A2122G:p.N708D,Dhx32:NM_001357685:exon12:c.A2077G:p.N693D,Dhx32:NM_133941:exon12:c.A2122G:p.N708D"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.7198651	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	133748902	12A2p6	cell line	sgMsh2	133748902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	201	0	0	NA	exonic	Dhx32	synonymous SNV	"Dhx32:NM_001286032:exon2:c.G18A:p.G6G,Dhx32:NM_001286030:exon3:c.G438A:p.G146G,Dhx32:NM_001286031:exon3:c.G438A:p.G146G,Dhx32:NM_001357685:exon3:c.G393A:p.G131G,Dhx32:NM_133941:exon3:c.G438A:p.G146G"	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999998	GCC	synonymous	NA	NA	NA	NA
M6_p20	chr7	135698125	12A2p6	cell line	sgMsh2	135698125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	313	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A5179G:p.I1727V	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	1.01E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	135699991	12A2p6	cell line	sgMsh2	135699991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	70	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A3313G:p.N1105D	7qF3	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9970698	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	139511443	12A2p6	cell line	sgMsh2	139511443	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	99	0	0	NA	exonic	Inpp5a	frameshift deletion	"Inpp5a:NM_001127363:exon5:c.342delA:p.N116Tfs*65,Inpp5a:NM_001355162:exon5:c.366delA:p.N124Tfs*65,Inpp5a:NM_183144:exon5:c.342delA:p.N116Tfs*65"	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.911081345	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr7	139654645	12A2p6	cell line	sgMsh2	139654645	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.121	98	0	0	NA	exonic	Cfap46	nonsynonymous SNV	Cfap46:NM_001302546:exon17:c.A2038T:p.I680F	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.9855144	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Vardict	2	0.034	228	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.15967405	3	1.01E-09	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	140220515	12A2p6	cell line	sgMsh2	140220515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	127	0	0	NA	exonic	Cd163l1	nonsynonymous SNV	Cd163l1:NM_172909:exon2:c.T208G:p.C70G	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9287012	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	140248153	12A2p6	cell line	sgMsh2	140248153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	131	0	0	NA	exonic	5830411N06Rik	synonymous SNV	"5830411N06Rik:NM_001128145:exon2:c.T273C:p.P91P,5830411N06Rik:NM_001128146:exon2:c.T273C:p.P91P,5830411N06Rik:NM_175533:exon2:c.T273C:p.P91P"	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999789	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	140372788	12A2p6	cell line	sgMsh2	140372788	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	263	0	0	NA	exonic	Olfr530	nonsynonymous SNV	Olfr530:NM_146519:exon1:c.C821A:p.A274D	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	140400943	12A2p6	cell line	sgMsh2	140400943	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	386	0	0	NA	exonic	Olfr531	synonymous SNV	Olfr531:NM_146953:exon1:c.T102A:p.A34A	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	1.36E-09	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	140861417	12A2p6	cell line	sgMsh2	140861417	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	89	0	0	NA	exonic	Ric8a	nonsynonymous SNV	Ric8a:NM_053194:exon8:c.G1329T:p.E443D	7qF4	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9854748	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	141067584	12A2p6	cell line	sgMsh2	141067584	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	255	0	0	NA	exonic	B4galnt4	nonsynonymous SNV	B4galnt4:NM_177897:exon12:c.A1163C:p.K388T	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999983	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	141068731	12A2p6	cell line	sgMsh2	141068731	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	103	0	0	NA	exonic	B4galnt4	nonsynonymous SNV	B4galnt4:NM_177897:exon14:c.A2159G:p.Y720C	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	7.86E-07	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	141091981	12A2p6	cell line	sgMsh2	141091981	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	47	0	0	NA	exonic	Sigirr	synonymous SNV	"Sigirr:NM_001355055:exon9:c.T888G:p.S296S,Sigirr:NM_023059:exon9:c.T888G:p.S296S"	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.8835181	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr7	141237686	12A2p6	cell line	sgMsh2	141237686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	108	0	0	NA	exonic	Phrf1	nonsynonymous SNV	Phrf1:NM_001081118:exon4:c.T407C:p.I136T	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.8103841	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	141357561	12A2p6	cell line	sgMsh2	141357561	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	60	0	0	NA	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon13:c.1087delA:p.S363Afs*3	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	CAG	frameshift	NA	NA	NA	-1
M6_p20	chr7	141401716	12A2p6	cell line	sgMsh2	141401716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	119	0	0	NA	exonic	Taldo1	synonymous SNV	Taldo1:NM_011528:exon5:c.A597G:p.A199A	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.8873119	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr7	141647548	12A2p6	cell line	sgMsh2	141647548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	175	0	0	NA	exonic	Muc6	nonsynonymous SNV	"Muc6:NM_001330001:exon19:c.A2365G:p.T789A,Muc6:NM_001368953:exon19:c.A2365G:p.T789A"	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.601125836	2	0.99948	GTG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	181	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.5645786	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr7	141804802	12A2p6	cell line	sgMsh2	141804802	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.108	107	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon28:c.A3735G:p.V1245V	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9292868	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr7	143529554	12A2p6	cell line	sgMsh2	143529554	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	128	0	0	NA	exonic	Nap1l4	nonsynonymous SNV	"Nap1l4:NM_001285489:exon9:c.T610G:p.F204V,Nap1l4:NM_001285490:exon9:c.T610G:p.F204V,Nap1l4:NM_008672:exon9:c.T610G:p.F204V"	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.286474031	3	0.9995398	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	143764865	12A2p6	cell line	sgMsh2	143764865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	163	0	0	NA	exonic	Mrgprg	nonsynonymous SNV	Mrgprg:NM_203492:exon2:c.T509C:p.V170A	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.988494	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	144595572	12A2p6	cell line	sgMsh2	144595572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	206	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon23:c.A2368G:p.M790V,Ano1:NM_178642:exon24:c.A2380G:p.M794V"	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9825636	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	197	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-104329818-145323643	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9786703	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	3189231	12A2p6	cell line	sgMsh2	3189231	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	68	0	0	NA	exonic	Insr	nonsynonymous SNV	"Insr:NM_001330056:exon9:c.G1929C:p.K643N,Insr:NM_010568:exon9:c.G1929C:p.K643N"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.8522487	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	3604493	12A2p6	cell line	sgMsh2	3604493	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.101	82	0	0	NA	exonic	Camsap3	nonsynonymous SNV	"Camsap3:NM_001163749:exon11:c.T2084G:p.L695R,Camsap3:NM_027171:exon11:c.T2081G:p.L694R,Camsap3:NM_001347112:exon12:c.T2129G:p.L710R,Camsap3:NM_001347113:exon12:c.T2114G:p.L705R,Camsap3:NM_001363240:exon12:c.T2132G:p.L711R,Camsap3:NM_001363241:exon12:c.T2117G:p.L706R,Camsap3:NM_001347111:exon13:c.T2162G:p.L721R,Camsap3:NM_001363239:exon13:c.T2165G:p.L722R"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.000861624	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.051	500	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.239511075	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	158	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9992541	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	4289852	12A2p6	cell line	sgMsh2	4289852	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	306	0	0	NA	exonic	Elavl1	synonymous SNV	Elavl1:NM_010485:exon6:c.C729T:p.G243G	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999993	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr8	4295362	12A2p6	cell line	sgMsh2	4295362	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	106	0	0	NA	exonic	Elavl1	synonymous SNV	Elavl1:NM_010485:exon5:c.T630C:p.P210P	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.864118389	1	0.9853359	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	4749614	12A2p6	cell line	sgMsh2	4749614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	168	0	0	NA	exonic	Shcbp1	synonymous SNV	Shcbp1:NM_011369:exon6:c.T861C:p.N287N	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999989	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	482	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	1.00E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M6_p20	chr8	9971777	12A2p6	cell line	sgMsh2	9971777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	458	0	0	NA	exonic	Lig4	nonsynonymous SNV	"Lig4:NM_001377042:exon2:c.A2002G:p.S668G,Lig4:NM_176953:exon2:c.A2002G:p.S668G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.474325855	2	0.9598285	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	11223048	12A2p6	cell line	sgMsh2	11223048	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	58	0	0	NA	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon28:c.T2046C:p.G682G	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.450844377	2	0.614703	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	11244386	12A2p6	cell line	sgMsh2	11244386	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	62	0	0	NA	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon10:c.A570T:p.P190P	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.994416	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	11441269	12A2p6	cell line	sgMsh2	11441269	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	54	0	0	NA	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon40:c.A3667T:p.R1223W	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.9893843	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	11628529	12A2p6	cell line	sgMsh2	11628529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	79	0	0	NA	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon3:c.A362G:p.D121G,Ankrd10:NM_133971:exon3:c.A362G:p.D121G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9382856	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	270	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.347525874	3	0.9999785	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	11824593	12A2p6	cell line	sgMsh2	11824593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	163	0	0	NA	exonic	Arhgef7	synonymous SNV	"Arhgef7:NM_001113518:exon18:c.T1752C:p.L584L,Arhgef7:NM_001372326:exon18:c.T1752C:p.L584L,Arhgef7:NM_001113517:exon19:c.T2223C:p.L741L,Arhgef7:NM_001372321:exon19:c.T2223C:p.L741L"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9267349	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr8	11854270	12A2p6	cell line	sgMsh2	11854270	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	236	0	0	NA	exonic	Tex29	nonsynonymous SNV	Tex29:NM_029326:exon5:c.C355T:p.P119S	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.601125836	2	0.9999671	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.08	89	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.8953783	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	298	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.262992553	3	1.50E-09	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	13094170	12A2p6	cell line	sgMsh2	13094170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	294	0	0	NA	exonic	Pcid2	synonymous SNV	Pcid2:NM_178708:exon6:c.A336G:p.A112A	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9999795	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	13242349	12A2p6	cell line	sgMsh2	13242349	C	-	Deletion	Mutect2;Vardict	2	0.109	74	0	0	NA	exonic	Adprhl1	frameshift deletion	Adprhl1:NM_172750:exon6:c.807delG:p.R270Gfs*7	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.51189622	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M6_p20	chr8	13308355	12A2p6	cell line	sgMsh2	13308355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	72	0	0	NA	exonic	Tmco3	nonsynonymous SNV	"Tmco3:NM_001364217:exon8:c.T1232C:p.I411T,Tmco3:NM_172282:exon8:c.T1235C:p.I412T"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9437831	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.099	80	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.464933264	2	0.000743101	TCG	synonymous	NA	NA	NA	NA
M6_p20	chr8	13455186	12A2p6	cell line	sgMsh2	13455186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	202	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon5:c.T427C:p.Y143H,Tmem255b:NM_001143671:exon6:c.T490C:p.Y164H"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9991473	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	13764591	12A2p6	cell line	sgMsh2	13764591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	351	0	0	NA	exonic	Cdc16	nonsynonymous SNV	"Cdc16:NM_001357247:exon7:c.T374G:p.V125G,Cdc16:NM_027276:exon8:c.T656G:p.V219G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9999874	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	14962630	12A2p6	cell line	sgMsh2	14962630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	273	0	0	NA	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon16:c.A1820G:p.N607S,Arhgef10:NM_172751:exon17:c.A1937G:p.N646S"	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.8429654	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	15929088	12A2p6	cell line	sgMsh2	15929088	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	129	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon55:c.A8495T:p.Y2832F	8qA1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9999752	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	268	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9991355	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22027710	12A2p6	cell line	sgMsh2	22027710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	175	0	0	NA	exonic	Atp7b	nonsynonymous SNV	Atp7b:NM_007511:exon2:c.A1111G:p.T371A	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	0.9225623	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22113825	12A2p6	cell line	sgMsh2	22113825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	376	0	0	NA	exonic	Nek5	nonsynonymous SNV	"Nek5:NM_001347318:exon5:c.T335C:p.L112P,Nek5:NM_177898:exon5:c.T335C:p.L112P"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9997497	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22243236	12A2p6	cell line	sgMsh2	22243236	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.093	168	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.T115A:p.W39R,Thsd1:NM_001293688:exon3:c.T298A:p.W100R,Thsd1:NM_019576:exon3:c.T298A:p.W100R"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.43675549	3	0.687194	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	97	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996696	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22365925	12A2p6	cell line	sgMsh2	22365925	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	607	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon26:c.C1740G:p.D580E	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	1.71E-08	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	22768462	12A2p6	cell line	sgMsh2	22768462	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	127	0	0	NA	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon3:c.T80A:p.F27Y	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.87351098	1	0.9954328	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	23064995	12A2p6	cell line	sgMsh2	23064995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	155	0	0	NA	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon2:c.A170G:p.N57S,Ank1:NM_001277280:exon2:c.A170G:p.N57S,Ank1:NM_001277281:exon2:c.A59G:p.N20S,Ank1:NM_001277284:exon2:c.A59G:p.N20S,Ank1:NM_001277286:exon2:c.A83G:p.N28S,Ank1:NM_001277289:exon2:c.A83G:p.N28S,Ank1:NM_031158:exon2:c.A83G:p.N28S"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	0.5314268	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	23106108	12A2p6	cell line	sgMsh2	23106108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	139	0	0	NA	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon18:c.T2174C:p.V725A,Ank1:NM_001277280:exon18:c.T2174C:p.V725A,Ank1:NM_001277281:exon18:c.T2063C:p.V688A,Ank1:NM_001277284:exon18:c.T2063C:p.V688A,Ank1:NM_001277286:exon18:c.T2087C:p.V696A,Ank1:NM_001277289:exon18:c.T2087C:p.V696A,Ank1:NM_031158:exon18:c.T2087C:p.V696A"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.7811844	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	327	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.399185125	3	0.9988814	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	87	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.417970308	3	0.6678972	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	25022626	12A2p6	cell line	sgMsh2	25022626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	136	0	0	NA	exonic	Tm2d2	synonymous SNV	Tm2d2:NM_027194:exon4:c.A489G:p.G163G	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.9978847	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	25586700	12A2p6	cell line	sgMsh2	25586700	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	103	0	0	NA	exonic	Letm2	synonymous SNV	"Letm2:NM_001364069:exon6:c.G885C:p.L295L,Letm2:NM_001364070:exon6:c.G393C:p.L131L,Letm2:NM_001364071:exon6:c.G393C:p.L131L,Letm2:NM_173012:exon6:c.G885C:p.L295L"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	0.9980413	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr8	25593874	12A2p6	cell line	sgMsh2	25593874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	164	0	0	NA	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon3:c.A340G:p.T114A,Letm2:NM_173012:exon3:c.A340G:p.T114A"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9268493	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	25666073	12A2p6	cell line	sgMsh2	25666073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	158	0	0	NA	exonic	Nsd3	nonsynonymous SNV	"Nsd3:NM_001081269:exon6:c.G1655T:p.R552M,Nsd3:NM_001001735:exon7:c.G1655T:p.R552M,Nsd3:NM_001308481:exon7:c.G1655T:p.R552M,Nsd3:NM_001308482:exon7:c.G1655T:p.R552M"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9895992	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	25769390	12A2p6	cell line	sgMsh2	25769390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	63	0	0	NA	exonic	Bag4	synonymous SNV	Bag4:NM_026121:exon4:c.A780G:p.A260A	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.7911004	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	25952049	12A2p6	cell line	sgMsh2	25952049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	244	0	0	NA	exonic	Hgsnat	nonsynonymous SNV	Hgsnat:NM_029884:exon14:c.T1447C:p.Y483H	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9999548	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	170	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999459	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	27393303	12A2p6	cell line	sgMsh2	27393303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	185	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon3:c.T226C:p.W76R,Chrnb3:NM_173212:exon4:c.T271C:p.W91R"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.6580407	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	28694739	12A2p6	cell line	sgMsh2	28694739	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	118	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347498:exon11:c.G1732T:p.V578L,Unc5d:NM_001347500:exon12:c.G1726T:p.V576L,Unc5d:NM_001347501:exon12:c.G1765T:p.V589L,Unc5d:NM_001347499:exon13:c.G1894T:p.V632L,Unc5d:NM_153135:exon14:c.G1948T:p.V650L"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.723229521	2	0.638783	ACT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	95	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.8919083	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	31918096	12A2p6	cell line	sgMsh2	31918096	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	44	0	0	NA	exonic	Nrg1	synonymous SNV	"Nrg1:NM_001364422:exon1:c.A108G:p.E36E,Nrg1:NM_001364423:exon1:c.A108G:p.E36E,Nrg1:NM_001364424:exon1:c.A108G:p.E36E,Nrg1:NM_001364426:exon1:c.A108G:p.E36E,Nrg1:NM_001364427:exon1:c.A108G:p.E36E,Nrg1:NM_001364428:exon1:c.A108G:p.E36E,Nrg1:NM_001364431:exon1:c.A108G:p.E36E,Nrg1:NM_178591:exon1:c.A108G:p.E36E"	8qA3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.08800207	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr8	34841777	12A2p6	cell line	sgMsh2	34841777	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	325	0	0	NA	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon22:c.A3327C:p.K1109N	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9979423	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	132	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.333436987	3	0.9963524	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr8	36129007	12A2p6	cell line	sgMsh2	36129007	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.102	60	0	0	NA	exonic	Prag1	synonymous SNV	Prag1:NM_172911:exon4:c.C2091T:p.H697H	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.7468922	ACC	synonymous	NA	NA	NA	NA
M6_p20	chr8	40912583	12A2p6	cell line	sgMsh2	40912583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	150	0	0	NA	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon9:c.A1402G:p.M468V,Slc7a2:NM_007514:exon9:c.A1399G:p.M467V"	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.9106905	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	41343555	12A2p6	cell line	sgMsh2	41343555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	426	0	0	NA	exonic	Asah1	synonymous SNV	Asah1:NM_019734:exon12:c.A1002G:p.T334T	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	905	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	43569504	12A2p6	cell line	sgMsh2	43569504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	683	0	0	NA	exonic	Adam26a	synonymous SNV	Adam26a:NM_010085:exon2:c.T948G:p.L316L	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	1	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	766	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.9999652	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	44951515	12A2p6	cell line	sgMsh2	44951515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	236	0	0	NA	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon1:c.T1302C:p.H434H	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9999801	ATT	synonymous	NA	NA	NA	NA
M6_p20	chr8	44953091	12A2p6	cell line	sgMsh2	44953091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	232	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon1:c.T2878G:p.S960A	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.371007352	3	0.9991648	GTC	nonsynonymous	GTCA	14	GTCAGTCAAGTCAG	NA
M6_p20	chr8	45010006	12A2p6	cell line	sgMsh2	45010006	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	68	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon4:c.G3859A:p.A1287T	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	0.9861644	TGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	201	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.27708144	3	0.9999981	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	45277024	12A2p6	cell line	sgMsh2	45277024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	115	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon8:c.A819C:p.E273D	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.8401809	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	45381602	12A2p6	cell line	sgMsh2	45381602	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	32	0	0	NA	exonic	Fam149a	synonymous SNV	Fam149a:NM_153535:exon1:c.T159C:p.T53T	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.6919538	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	45772633	12A2p6	cell line	sgMsh2	45772633	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	192	0	0	NA	exonic	Sorbs2	nonsynonymous SNV	"Sorbs2:NM_001310708:exon8:c.C572T:p.A191V,Sorbs2:NM_001205219:exon11:c.C779T:p.A260V,Sorbs2:NM_001310707:exon11:c.C710T:p.A237V,Sorbs2:NM_172752:exon11:c.C779T:p.A260V"	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.563555471	2	0.9996949	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	45943338	12A2p6	cell line	sgMsh2	45943338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	226	0	0	NA	exonic	Ccdc110	synonymous SNV	Ccdc110:NM_001033246:exon6:c.A2265T:p.I755I	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.821851729	1	0.996911	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	45980631	12A2p6	cell line	sgMsh2	45980631	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	153	0	0	NA	exonic	Ufsp2	nonsynonymous SNV	Ufsp2:NM_138668:exon4:c.A301C:p.T101P	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9987533	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	47192082	12A2p6	cell line	sgMsh2	47192082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	25	0	0	NA	exonic	Stox2	nonsynonymous SNV	"Stox2:NM_001114311:exon3:c.A2342G:p.D781G,Stox2:NM_001286376:exon3:c.A2342G:p.D781G,Stox2:NM_175162:exon3:c.A2156G:p.D719G,Stox2:NM_001363119:exon4:c.A1718G:p.D573G"	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.898846	GTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M6_p20	chr8	47193435	12A2p6	cell line	sgMsh2	47193435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	62	0	0	NA	exonic	Stox2	nonsynonymous SNV	"Stox2:NM_001114311:exon3:c.A989G:p.H330R,Stox2:NM_001286376:exon3:c.A989G:p.H330R,Stox2:NM_175162:exon3:c.A803G:p.H268R,Stox2:NM_001363119:exon4:c.A365G:p.H122R"	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	8.57E-05	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Vardict	2	0.234	94	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M6_p20	chr8	47822604	12A2p6	cell line	sgMsh2	47822604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	45	0	0	NA	exonic	Cldn24	synonymous SNV	Cldn24:NM_001111318:exon1:c.T462C:p.P154P	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.9396714	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	47858780	12A2p6	cell line	sgMsh2	47858780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	158	0	0	NA	exonic	Wwc2	synonymous SNV	Wwc2:NM_133791:exon15:c.T2347C:p.L783L	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9991664	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	47883537	12A2p6	cell line	sgMsh2	47883537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	99	0	0	NA	exonic	Wwc2	nonsynonymous SNV	Wwc2:NM_133791:exon6:c.A689G:p.K230R	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.854725798	1	0.9746113	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	154	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9970893	CCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	53587238	12A2p6	cell line	sgMsh2	53587238	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	86	0	0	NA	exonic	Neil3	nonsynonymous SNV	Neil3:NM_146208:exon10:c.T1728A:p.N576K	8qB1.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.5967956	AAT	nonsynonymous	A	6	AAAAAA	NA
M6_p20	chr8	53608826	12A2p6	cell line	sgMsh2	53608826	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	303	0	0	NA	exonic	Neil3	synonymous SNV	Neil3:NM_146208:exon4:c.G519A:p.Q173Q	8qB1.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	1.02E-09	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr8	55871464	12A2p6	cell line	sgMsh2	55871464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	165	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.T1954C:p.F652L	8qB2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.9999987	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	55873143	12A2p6	cell line	sgMsh2	55873143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	310	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.A275G:p.Y92C	8qB2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	1.01E-09	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	56542923	12A2p6	cell line	sgMsh2	56542923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	214	0	0	NA	exonic	Cep44	nonsynonymous SNV	Cep44:NM_001009951:exon5:c.T490C:p.F164L	8qB2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.610518427	2	0.9998409	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	194	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.965721	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	58911379	12A2p6	cell line	sgMsh2	58911379	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	162	0	0	NA	exonic	Galntl6	nonsynonymous SNV	Galntl6:NM_175032:exon1:c.G96T:p.K32N	8qB2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.281777736	3	0.9999624	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	60922977	12A2p6	cell line	sgMsh2	60922977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	458	0	0	NA	exonic	Clcn3	synonymous SNV	"Clcn3:NM_007711:exon10:c.T1788C:p.A596A,Clcn3:NM_173876:exon10:c.T1881C:p.A627A,Clcn3:NM_173873:exon11:c.T1962C:p.A654A,Clcn3:NM_173874:exon11:c.T1962C:p.A654A"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.43675549	3	0.9646398	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	61384775	12A2p6	cell line	sgMsh2	61384775	C	T	SNV	Mutect2;Vardict	2	0.199	21	0	0	NA	exonic	Sh3rf1	nonsynonymous SNV	Sh3rf1:NM_021506:exon11:c.C2353T:p.P785S	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	0.80522	TCC	nonsynonymous	GATGGT	12	GATGGTGATGGT	NA
M6_p20	chr8	64968763	12A2p6	cell line	sgMsh2	64968763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	196	0	0	NA	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T595A:p.Y199N,Tmem192:NM_028427:exon6:c.T730A:p.Y244N"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	0.9998796	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	64968767	12A2p6	cell line	sgMsh2	64968767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	192	0	0	NA	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T599C:p.L200P,Tmem192:NM_028427:exon6:c.T734C:p.L245P"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9998068	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	64983490	12A2p6	cell line	sgMsh2	64983490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	89	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A307G:p.T103A	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.540073993	2	0.9627768	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	64983657	12A2p6	cell line	sgMsh2	64983657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	146	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A140G:p.Q47R	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999854	CTG	nonsynonymous	CTGCC	11	CTGCCCTGCCC	NA
M6_p20	chr8	65001561	12A2p6	cell line	sgMsh2	65001561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	160	0	0	NA	exonic	Trim60	nonsynonymous SNV	Trim60:NM_153097:exon2:c.A35G:p.K12R	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.962740597	1	0.9999868	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	65086574	12A2p6	cell line	sgMsh2	65086574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	239	0	0	NA	exonic	Smim31	nonsynonymous SNV	Smim31:NM_001352886:exon3:c.A202G:p.T68A	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	4.37E-09	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	66681852	12A2p6	cell line	sgMsh2	66681852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	163	0	0	NA	exonic	Npy5r	synonymous SNV	"Npy5r:NM_001358957:exon2:c.A288G:p.T96T,Npy5r:NM_001358958:exon2:c.A288G:p.T96T,Npy5r:NM_016708:exon2:c.A288G:p.T96T"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.643392496	2	0.9929477	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	66704576	12A2p6	cell line	sgMsh2	66704576	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	165	0	0	NA	exonic	Npy1r	nonsynonymous SNV	"Npy1r:NM_010934:exon2:c.T647G:p.V216G,Npy1r:NM_001358955:exon3:c.T647G:p.V216G"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.450844377	2	0.5285766	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	66704873	12A2p6	cell line	sgMsh2	66704873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	297	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon3:c.T834C:p.L278L,Npy1r:NM_001358955:exon4:c.T834C:p.L278L"	8qB3.1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	1.03E-09	TTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	69102822	12A2p6	cell line	sgMsh2	69102822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	401	0	0	NA	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon7:c.T664C:p.Y222H	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.9910171	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	272	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.6734659	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	69823579	12A2p6	cell line	sgMsh2	69823579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	179	0	0	NA	exonic	Lpar2	nonsynonymous SNV	Lpar2:NM_020028:exon2:c.A17G:p.Y6C	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9235629	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	129	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9994584	CGA	synonymous	NA	NA	NA	NA
M6_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	155	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.695051748	2	0.8980501	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	70257220	12A2p6	cell line	sgMsh2	70257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	50	0	0	NA	exonic	Sugp2	synonymous SNV	"Sugp2:NM_001168290:exon7:c.T2490C:p.G830G,Sugp2:NM_172755:exon7:c.T2490C:p.G830G"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.727925817	2	0.517358	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	70294725	12A2p6	cell line	sgMsh2	70294725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	389	0	0	NA	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1064G:p.Y355C	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.587036949	2	6.95E-09	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	70294744	12A2p6	cell line	sgMsh2	70294744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	343	0	0	NA	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1045G:p.I349V	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.9931179	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71348698	12A2p6	cell line	sgMsh2	71348698	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	124	0	0	NA	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3496G:p.T1166A,Myo9b:NM_001142323:exon22:c.A3496G:p.T1166A,Myo9b:NM_015742:exon22:c.A3496G:p.T1166A"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.83124432	1	0.9736729	CAC	nonsynonymous	CACC	8	CACCCACC	NA
M6_p20	chr8	71349146	12A2p6	cell line	sgMsh2	71349146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	108	0	0	NA	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3944C:p.D1315A,Myo9b:NM_001142323:exon22:c.A3944C:p.D1315A,Myo9b:NM_015742:exon23:c.A3911C:p.D1304A"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9297253	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	222	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.375703647	3	0.9982736	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71461477	12A2p6	cell line	sgMsh2	71461477	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	98	0	0	NA	exonic	Abhd8	nonsynonymous SNV	Abhd8:NM_022419:exon2:c.T506C:p.V169A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9757931	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71482301	12A2p6	cell line	sgMsh2	71482301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	186	0	0	NA	exonic	Ano8	nonsynonymous SNV	Ano8:NM_001164679:exon10:c.T1256C:p.V419A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.929866528	1	0.999985	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71620653	12A2p6	cell line	sgMsh2	71620653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	194	0	0	NA	exonic	Colgalt1	synonymous SNV	"Colgalt1:NM_001364443:exon7:c.T987C:p.T329T,Colgalt1:NM_146211:exon7:c.T987C:p.T329T"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9998584	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr8	71641433	12A2p6	cell line	sgMsh2	71641433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	140	0	0	NA	exonic	Unc13a	synonymous SNV	Unc13a:NM_001029873:exon33:c.A4023G:p.V1341V	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.943955414	1	0.9998796	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	71679027	12A2p6	cell line	sgMsh2	71679027	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	251	0	0	NA	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon4:c.C358A:p.L120M,Jak3:NM_010589:exon4:c.C358A:p.L120M"	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.666873974	2	0.9971349	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71913129	12A2p6	cell line	sgMsh2	71913129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	210	0	0	NA	exonic	Zfp882	nonsynonymous SNV	Zfp882:NM_001166645:exon2:c.T11C:p.V4A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	3.63E-08	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	71965814	12A2p6	cell line	sgMsh2	71965814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	241	0	0	NA	exonic	Zfp961	synonymous SNV	Zfp961:NM_001164581:exon2:c.T87C:p.D29D	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.917192	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr8	72002469	12A2p6	cell line	sgMsh2	72002469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	142	0	0	NA	exonic	Cyp4f18	nonsynonymous SNV	Cyp4f18:NM_024444:exon3:c.T262A:p.C88S	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.690355452	2	0.899301	CAT	nonsynonymous	GCAT	8	GCATGCAT	NA
M6_p20	chr8	72711624	12A2p6	cell line	sgMsh2	72711624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	184	0	0	NA	exonic	Nwd1	synonymous SNV	Nwd1:NM_176940:exon19:c.T4299C:p.A1433A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9741583	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	72741820	12A2p6	cell line	sgMsh2	72741820	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	165	0	0	NA	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon8:c.T923C:p.V308A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.342829578	3	0.9986374	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	72753204	12A2p6	cell line	sgMsh2	72753204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	151	0	0	NA	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon15:c.T2537C:p.V846A	8qB3.3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	8.27E-07	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	75121622	12A2p6	cell line	sgMsh2	75121622	G	-	Deletion	Mutect2;Vardict	2	0.089	246	0	0	NA	exonic	Mcm5	frameshift deletion	"Mcm5:NM_001302540:exon12:c.1498delG:p.E501Rfs*15,Mcm5:NM_008566:exon12:c.1498delG:p.E501Rfs*15"	8qC1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.417970308	NA	NA	AGG	frameshift	NA	NA	NA	-1
M6_p20	chr8	77310815	12A2p6	cell line	sgMsh2	77310815	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	234	0	0	NA	exonic	Arhgap10	nonsynonymous SNV	"Arhgap10:NM_001363417:exon18:c.G1717A:p.A573T,Arhgap10:NM_001363420:exon18:c.G1408A:p.A470T,Arhgap10:NM_001363418:exon19:c.G1783A:p.A595T,Arhgap10:NM_001363419:exon19:c.G1474A:p.A492T,Arhgap10:NM_001363421:exon19:c.G1474A:p.A492T,Arhgap10:NM_030113:exon19:c.G1783A:p.A595T"	8qC1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.817155433	1	0.9964222	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	79274268	12A2p6	cell line	sgMsh2	79274268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	189	0	0	NA	exonic	Mmaa	nonsynonymous SNV	"Mmaa:NM_133823:exon4:c.T560C:p.L187P,Mmaa:NM_001363471:exon5:c.T74C:p.L25P,Mmaa:NM_001363470:exon6:c.T560C:p.L187P,Mmaa:NM_001363472:exon6:c.T74C:p.L25P"	8qC1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.78897766	1	0.9479116	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	79667617	12A2p6	cell line	sgMsh2	79667617	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	238	0	0	NA	exonic	Otud4	synonymous SNV	"Otud4:NM_001081164:exon16:c.T1557C:p.H519H,Otud4:NM_001256033:exon16:c.T1560C:p.H520H"	8qC1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.605822132	2	0.9999585	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr8	80612038	12A2p6	cell line	sgMsh2	80612038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	165	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.A959G:p.D320G	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.704444339	2	0.8627911	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	80985050	12A2p6	cell line	sgMsh2	80985050	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	162	0	0	NA	exonic	Usp38	synonymous SNV	Usp38:NM_027554:exon9:c.A2355G:p.S785S	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.338133283	3	0.998832	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	82010546	12A2p6	cell line	sgMsh2	82010546	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	240	0	0	NA	exonic	Inpp4b	nonsynonymous SNV	"Inpp4b:NM_001297593:exon16:c.T1388G:p.V463G,Inpp4b:NM_001024617:exon17:c.T1520G:p.V507G,Inpp4b:NM_001297591:exon17:c.T1571G:p.V524G,Inpp4b:NM_001297596:exon17:c.T1571G:p.V524G"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999838	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	82343311	12A2p6	cell line	sgMsh2	82343311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	353	0	0	NA	exonic	Il15	synonymous SNV	"Il15:NM_001254747:exon5:c.A123T:p.V41V,Il15:NM_008357:exon5:c.A123T:p.V41V"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.709140635	2	0.9733691	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	82344394	12A2p6	cell line	sgMsh2	82344394	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	485	0	0	NA	exonic	Il15	nonsynonymous SNV	"Il15:NM_001254747:exon4:c.A91T:p.I31F,Il15:NM_008357:exon4:c.A91T:p.I31F"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	0.9360154	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83259307	12A2p6	cell line	sgMsh2	83259307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	177	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.C1741T:p.R581W,Tbc1d9:NM_001111304:exon15:c.C2440T:p.R814W"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.737318408	2	0.5379123	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83354721	12A2p6	cell line	sgMsh2	83354721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	75	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon2:c.A102C:p.Q34H	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.8200551	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83368168	12A2p6	cell line	sgMsh2	83368168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	167	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon8:c.G833T:p.W278L	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.5941286	TGG	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	141	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.502503628	2	0.9496934	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M6_p20	chr8	83573085	12A2p6	cell line	sgMsh2	83573085	A	G	SNV	Mutect2;MuSe	2	0.273	12	0	0	NA	exonic	Tecr	nonsynonymous SNV	"Tecr:NM_027179:exon5:c.T281C:p.V94A,Tecr:NM_134118:exon6:c.T326C:p.V109A"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.7487509	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83669445	12A2p6	cell line	sgMsh2	83669445	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.105	85	0	0	NA	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon3:c.G1130A:p.G377D	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.493111037	2	0.8493509	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	192	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.446148081	3	8.97E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	83725997	12A2p6	cell line	sgMsh2	83725997	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	242	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon11:c.A1161G:p.I387M,Adgre5:NM_001163031:exon11:c.A1155G:p.I385M,Adgre5:NM_001163030:exon12:c.A1308G:p.I436M,Adgre5:NM_011925:exon13:c.A1443G:p.I481M"	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9957576	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84092987	12A2p6	cell line	sgMsh2	84092987	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	80	0	0	NA	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.G1927A:p.E643K	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9986935	CGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84093075	12A2p6	cell line	sgMsh2	84093075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	114	0	0	NA	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.A2015G:p.Y672C	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.746710999	1	9.76E-07	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84253982	12A2p6	cell line	sgMsh2	84253982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	203	0	0	NA	exonic	Mri1	nonsynonymous SNV	Mri1:NM_026423:exon4:c.A830G:p.Y277C	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.943955414	1	0.9999978	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84673217	12A2p6	cell line	sgMsh2	84673217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	193	0	0	NA	exonic	Nacc1	nonsynonymous SNV	Nacc1:NM_025788:exon6:c.T1370C:p.V457A	8qC2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.535377698	2	0.9978957	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84913049	12A2p6	cell line	sgMsh2	84913049	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	99	0	0	NA	exonic	Mast1	nonsynonymous SNV	Mast1:NM_019945:exon26:c.A3650C:p.Q1217P	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.577644358	2	0.9870535	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	84990752	12A2p6	cell line	sgMsh2	84990752	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	17	0	0	NA	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001167991:exon1:c.G45T:p.W15C,Hook2:NM_001363497:exon1:c.G45T:p.W15C,Hook2:NM_001363498:exon1:c.G45T:p.W15C,Hook2:NM_001372357:exon1:c.G45T:p.W15C,Hook2:NM_001372358:exon1:c.G45T:p.W15C,Hook2:NM_001372359:exon1:c.G45T:p.W15C,Hook2:NM_001372360:exon1:c.G45T:p.W15C,Hook2:NM_001372361:exon1:c.G22T:p.V8F,Hook2:NM_133255:exon1:c.G45T:p.W15C"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.821154	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	85055070	12A2p6	cell line	sgMsh2	85055070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	105	0	0	NA	exonic	Tnpo2	nonsynonymous SNV	"Tnpo2:NM_001122843:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364031:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364032:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364033:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364034:exon22:c.T2450C:p.M817T,Tnpo2:NM_001379096:exon22:c.T2480C:p.M827T,Tnpo2:NM_145390:exon22:c.T2480C:p.M827T"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.615214723	2	0.9819994	ATG	nonsynonymous	ATG	8	ATGATGAT	NA
M6_p20	chr8	85085445	12A2p6	cell line	sgMsh2	85085445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	212	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon4:c.T527C:p.L176P	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5247482	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	85359107	12A2p6	cell line	sgMsh2	85359107	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	152	0	0	NA	exonic	Mylk3	nonsynonymous SNV	"Mylk3:NM_001297612:exon3:c.T398C:p.V133A,Mylk3:NM_175441:exon3:c.T797C:p.V266A"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.432059195	3	0.7144014	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	85553352	12A2p6	cell line	sgMsh2	85553352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	53	0	0	NA	exonic	Dnaja2	nonsynonymous SNV	Dnaja2:NM_019794:exon3:c.A197G:p.Y66C	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.981525779	1	0.9844108	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	86527358	12A2p6	cell line	sgMsh2	86527358	A	-	Deletion	Mutect2;Vardict	2	0.19	59	0	0	NA	exonic	Abcc12	frameshift deletion	Abcc12:NM_172912:exon20:c.2796delT:p.F932Lfs*7	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.892296163	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M6_p20	chr8	88308681	12A2p6	cell line	sgMsh2	88308681	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	202	0	0	NA	exonic	Adcy7	nonsynonymous SNV	"Adcy7:NM_001037723:exon5:c.T212G:p.L71R,Adcy7:NM_001037724:exon5:c.T212G:p.L71R,Adcy7:NM_001109756:exon5:c.T212G:p.L71R,Adcy7:NM_007406:exon5:c.T212G:p.L71R"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9898823	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	88309697	12A2p6	cell line	sgMsh2	88309697	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.178	123	0	0	NA	exonic	Adcy7	synonymous SNV	"Adcy7:NM_001037723:exon6:c.T381C:p.P127P,Adcy7:NM_001037724:exon6:c.T381C:p.P127P,Adcy7:NM_001109756:exon6:c.T381C:p.P127P,Adcy7:NM_007406:exon6:c.T381C:p.P127P"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.835940616	1	0.9773479	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr8	89032825	12A2p6	cell line	sgMsh2	89032825	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	108	0	0	NA	exonic	Sall1	nonsynonymous SNV	"Sall1:NM_001371070:exon2:c.G650A:p.G217E,Sall1:NM_001371069:exon3:c.G650A:p.G217E,Sall1:NM_021390:exon3:c.G650A:p.G217E"	8qC3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.751407295	1	0.6107533	CCC	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr8	90933831	12A2p6	cell line	sgMsh2	90933832	AT	GC	DBS	Mutect2;Vardict	2	0.17	264	0	0	NA	exonic	Chd9	nonframeshift substitution	"Chd9:NM_001310530:exon1:c.1418_1419GC:p.H473R,Chd9:NM_177224:exon3:c.1418_1419GC:p.H473R"	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.798370251	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	91087019	12A2p6	cell line	sgMsh2	91087019	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	205	0	0	NA	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon7:c.A891T:p.L297F,Rbl2:NM_001282001:exon8:c.A1020T:p.L340F,Rbl2:NM_011250:exon8:c.A1020T:p.L340F"	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.9998986	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	91096777	12A2p6	cell line	sgMsh2	91096777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	0	0	NA	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon10:c.A1332C:p.K444N,Rbl2:NM_011250:exon11:c.A1461C:p.K487N"	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999294	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M6_p20	chr8	91220227	12A2p6	cell line	sgMsh2	91220227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	241	0	0	NA	exonic	Rpgrip1l	nonsynonymous SNV	Rpgrip1l:NM_173431:exon26:c.C3745T:p.H1249Y	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9850341	TGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	91401873	12A2p6	cell line	sgMsh2	91401873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	179	0	0	NA	exonic	Fto	nonsynonymous SNV	Fto:NM_011936:exon2:c.T112C:p.F38L	8qC4	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9784462	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	92360634	12A2p6	cell line	sgMsh2	92360634	T	C	SNV	Mutect2;Strelka2	2	0.374	8	0	0	NA	exonic	Irx5	nonsynonymous SNV	Irx5:NM_018826:exon3:c.T1193C:p.V398A	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	0.6717552	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	92678548	12A2p6	cell line	sgMsh2	92678548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	54	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.T1043C:p.L348S,Irx6:NM_022428:exon5:c.T1043C:p.L348S"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.7659107	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	92830826	12A2p6	cell line	sgMsh2	92830826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	160	0	0	NA	exonic	Mmp2	nonsynonymous SNV	Mmp2:NM_008610:exon2:c.A359G:p.D120G	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.648088792	2	0.9902134	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	93025607	12A2p6	cell line	sgMsh2	93025607	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	298	0	0	NA	exonic	Ces1a	nonsynonymous SNV	Ces1a:NM_001013764:exon10:c.A1121C:p.K374T	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.262992553	3	1.50E-09	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	122	0	0	NA	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.450844377	2	8.88E-06	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94172860	12A2p6	cell line	sgMsh2	94172860	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.103	76	0	0	NA	exonic	Mt2	nonsynonymous SNV	Mt2:NM_008630:exon1:c.T13A:p.C5S	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.7936395	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94353051	12A2p6	cell line	sgMsh2	94353051	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	310	0	0	NA	exonic	Slc12a3	synonymous SNV	"Slc12a3:NM_001205311:exon21:c.A2506C:p.R836R,Slc12a3:NM_019415:exon21:c.A2503C:p.R835R"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.9940127	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	54	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.6869205	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94649777	12A2p6	cell line	sgMsh2	94649777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	179	0	0	NA	exonic	Rspry1	nonsynonymous SNV	"Rspry1:NM_001359093:exon12:c.A1298C:p.D433A,Rspry1:NM_026274:exon12:c.A1298C:p.D433A"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.615214723	2	0.9991089	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94671326	12A2p6	cell line	sgMsh2	94671326	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	0	0	NA	exonic	Arl2bp	nonsynonymous SNV	"Arl2bp:NM_024191:exon4:c.A239C:p.Q80P,Arl2bp:NM_024269:exon4:c.A206C:p.Q69P"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.999929	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	94906038	12A2p6	cell line	sgMsh2	94906038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	100	0	0	NA	exonic	Ccdc102a	nonsynonymous SNV	Ccdc102a:NM_001033533:exon7:c.A1310C:p.E437A	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.699748043	2	0.7680516	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	95095417	12A2p6	cell line	sgMsh2	95095417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	86	0	0	NA	exonic	Katnb1	nonsynonymous SNV	Katnb1:NM_028805:exon10:c.A770G:p.Y257C	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9991957	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	95102721	12A2p6	cell line	sgMsh2	95102721	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	162	0	0	NA	exonic	Kifc3	synonymous SNV	"Kifc3:NM_001145832:exon13:c.C1527T:p.H509H,Kifc3:NM_001372315:exon15:c.C1938T:p.H646H,Kifc3:NM_010631:exon15:c.C1938T:p.H646H,Kifc3:NM_001372316:exon16:c.C1725T:p.H575H,Kifc3:NM_001372317:exon16:c.C1725T:p.H575H,Kifc3:NM_001145831:exon17:c.C1800T:p.H600H,Kifc3:NM_001372312:exon17:c.C2406T:p.H802H,Kifc3:NM_001372314:exon17:c.C2259T:p.H753H,Kifc3:NM_001372313:exon18:c.C2259T:p.H753H"	8qC5	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.427362899	3	0.7871625	CGT	synonymous	NA	NA	NA	NA
M6_p20	chr8	95740989	12A2p6	cell line	sgMsh2	95740989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	183	0	0	NA	exonic	Cnot1	synonymous SNV	"Cnot1:NM_001205226:exon32:c.T4494C:p.C1498C,Cnot1:NM_001372351:exon32:c.T4497C:p.C1499C,Cnot1:NM_001372353:exon32:c.T4515C:p.C1505C,Cnot1:NM_153164:exon32:c.T4500C:p.C1500C,Cnot1:NM_178078:exon32:c.T4500C:p.C1500C"	8qD1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.652785087	2	0.9935302	AAC	synonymous	AAC	8	AACAACAA	NA
M6_p20	chr8	95760148	12A2p6	cell line	sgMsh2	95760148	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	141	0	0	NA	exonic	Cnot1	nonsynonymous SNV	"Cnot1:NM_001205226:exon16:c.C1924T:p.P642S,Cnot1:NM_001372351:exon16:c.C1930T:p.P644S,Cnot1:NM_001372353:exon16:c.C1930T:p.P644S,Cnot1:NM_153164:exon16:c.C1930T:p.P644S,Cnot1:NM_178078:exon16:c.C1930T:p.P644S"	8qD1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.51189622	2	0.9688094	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	99031048	12A2p6	cell line	sgMsh2	99031048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	162	0	0	NA	exonic	Cdh8	synonymous SNV	"Cdh8:NM_001039154:exon12:c.T1917A:p.V639V,Cdh8:NM_001285913:exon12:c.T1917A:p.V639V,Cdh8:NM_001285914:exon12:c.T1917A:p.V639V,Cdh8:NM_007667:exon12:c.T1917A:p.V639V"	8qD1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.9851957	GAA	synonymous	NA	NA	NA	NA
M6_p20	chr8	99200309	12A2p6	cell line	sgMsh2	99200309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	444	0	0	NA	exonic	Cdh8	synonymous SNV	"Cdh8:NM_001039154:exon5:c.T759C:p.S253S,Cdh8:NM_001285913:exon5:c.T759C:p.S253S,Cdh8:NM_001285914:exon5:c.T759C:p.S253S,Cdh8:NM_007667:exon5:c.T759C:p.S253S"	8qD1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.300562918	3	1.01E-09	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	182	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.455540673	2	0.5935878	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	104322418	12A2p6	cell line	sgMsh2	104322418	A	-	Deletion	Mutect2;Vardict	2	0.174	83	0	0	NA	exonic	Cmtm2b	frameshift deletion	Cmtm2b:NM_028524:exon1:c.64delA:p.G23Afs*23	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.817155433	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr8	104484372	12A2p6	cell line	sgMsh2	104484372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	52	0	0	NA	exonic	Terb1	nonsynonymous SNV	Terb1:NM_180958:exon12:c.A1022G:p.N341S	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.962740597	1	0.9773065	ATT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr8	104621641	12A2p6	cell line	sgMsh2	104621641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	65	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon5:c.T353C:p.L118P,Cdh16:NM_001252628:exon6:c.T443C:p.L148P,Cdh16:NM_007663:exon6:c.T443C:p.L148P"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.605822132	2	0.9212927	GAG	nonsynonymous	AGGAAG	12	AGGAAGAGGAAG	NA
M6_p20	chr8	104741414	12A2p6	cell line	sgMsh2	104741414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	125	0	0	NA	exonic	Ces2a	stoploss	"Ces2a:NM_001190330:exon11:c.T1576C:p.X526Q,Ces2a:NM_133960:exon12:c.T1675C:p.X559Q"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.662177679	2	0.9532986	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	802	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.413274012	3	0.9999985	GAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	104954091	12A2p6	cell line	sgMsh2	104954091	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	429	0	0	NA	exonic	Ces2f	nonsynonymous SNV	"Ces2f:NM_001357269:exon9:c.A1091G:p.N364S,Ces2f:NM_001079865:exon11:c.A1484G:p.N495S"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.455540673	3	0.5048793	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	104968392	12A2p6	cell line	sgMsh2	104968392	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	105	0	0	NA	exonic	Ces2g	nonsynonymous SNV	Ces2g:NM_197999:exon12:c.G1644T:p.E548D	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.925170232	1	0.9979506	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	104	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.441451786	3	0.5117735	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105178680	12A2p6	cell line	sgMsh2	105178680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	115	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.T253C:p.Y85H,Cbfb:NM_001161458:exon3:c.T253C:p.Y85H,Cbfb:NM_022309:exon3:c.T253C:p.Y85H"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.918465	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105332119	12A2p6	cell line	sgMsh2	105332119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	169	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon14:c.T2216C:p.L739P	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.742014704	1	0.5280426	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105375733	12A2p6	cell line	sgMsh2	105375733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	66	0	0	NA	exonic	Plekhg4	nonsynonymous SNV	"Plekhg4:NM_001081333:exon1:c.A353G:p.N118S,Plekhg4:NM_001364406:exon3:c.A461G:p.N154S"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.953348005	1	0.9894012	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105458499	12A2p6	cell line	sgMsh2	105458499	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	194	0	0	NA	exonic	Lrrc36	nonsynonymous SNV	"Lrrc36:NM_001033371:exon9:c.G1544T:p.G515V,Lrrc36:NM_001170789:exon9:c.G1550T:p.G517V,Lrrc36:NM_001170788:exon12:c.G1913T:p.G638V"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.479022151	2	0.88844	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105522199	12A2p6	cell line	sgMsh2	105522199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	186	0	0	NA	exonic	Hsd11b2	nonsynonymous SNV	Hsd11b2:NM_008289:exon2:c.A322G:p.T108A	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.9857026	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105700789	12A2p6	cell line	sgMsh2	105700789	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	72	0	0	NA	exonic	Acd	synonymous SNV	Acd:NM_001012638:exon2:c.T150A:p.P50P	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.732622113	2	0.5176257	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Vardict	2	0.065	213	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.305259214	NA	NA	CTT	frameshift	NA	NA	NA	-1
M6_p20	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	185	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999786	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105945456	12A2p6	cell line	sgMsh2	105945456	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	73	0	0	NA	exonic	Slc12a4	nonsynonymous SNV	"Slc12a4:NM_001253804:exon20:c.C2629T:p.R877W,Slc12a4:NM_009195:exon20:c.C2623T:p.R875W"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.943955414	1	0.9917081	CGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	174	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.784281364	1	0.9188449	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr8	105996314	12A2p6	cell line	sgMsh2	105996314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	102	0	0	NA	exonic	Dpep2	nonsynonymous SNV	Dpep2:NM_176913:exon1:c.G81T:p.K27N	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.59642954	2	0.9868523	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106011354	12A2p6	cell line	sgMsh2	106011354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	57	0	0	NA	exonic	Ddx28	nonsynonymous SNV	Ddx28:NM_028038:exon1:c.T71C:p.L24P	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.7759592	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106092120	12A2p6	cell line	sgMsh2	106092120	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	196	0	0	NA	exonic	Nfatc3	nonsynonymous SNV	"Nfatc3:NM_001368796:exon4:c.A1493T:p.Q498L,Nfatc3:NM_001368797:exon4:c.A1469T:p.Q490L,Nfatc3:NM_010901:exon4:c.A1493T:p.Q498L"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.35222217	3	0.999304	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106131676	12A2p6	cell line	sgMsh2	106131676	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	177	0	0	NA	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon14:c.T2052G:p.F684L	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.9710511	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106131688	12A2p6	cell line	sgMsh2	106131688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	176	0	0	NA	exonic	Esrp2	synonymous SNV	Esrp2:NM_176838:exon14:c.A2040G:p.L680L	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9996492	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	106219993	12A2p6	cell line	sgMsh2	106219993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	211	0	0	NA	exonic	Prmt7	nonsynonymous SNV	Prmt7:NM_145404:exon4:c.T206C:p.L69P	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.549466584	2	0.9995854	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106242239	12A2p6	cell line	sgMsh2	106242239	T	-	Deletion	Mutect2;Vardict	2	0.121	174	0	0	NA	exonic	Prmt7	frameshift deletion	Prmt7:NM_145404:exon10:c.1184delT:p.L395Rfs*13	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.568251767	NA	NA	CTG	frameshift	NA	NA	NA	-1
M6_p20	chr8	106692630	12A2p6	cell line	sgMsh2	106692630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	321	0	0	NA	exonic	Tango6	nonsynonymous SNV	Tango6:NM_173037:exon3:c.T808C:p.Y270H	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9999863	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	106935824	12A2p6	cell line	sgMsh2	106935824	C	A	SNV	Mutect2;Vardict	2	0.5	7	0	0	NA	exonic	Sntb2	nonsynonymous SNV	"Sntb2:NM_001368316:exon1:c.C23A:p.T8N,Sntb2:NM_009229:exon1:c.C23A:p.T8N"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	3	1	1	0.6490452	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	107040978	12A2p6	cell line	sgMsh2	107040978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	193	0	0	NA	exonic	Vps4a	nonsynonymous SNV	Vps4a:NM_126165:exon6:c.T568C:p.F190L	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.380399943	3	0.9939404	CTT	nonsynonymous	CTT	8	CTTCTTCT	NA
M6_p20	chr8	107052821	12A2p6	cell line	sgMsh2	107052821	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	241	0	0	NA	exonic	Cog8	nonsynonymous SNV	Cog8:NM_139229:exon3:c.T823A:p.F275I	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.615214723	2	0.9999272	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	107058147	12A2p6	cell line	sgMsh2	107058147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	144	0	0	NA	exonic	Nip7	nonsynonymous SNV	Nip7:NM_025391:exon4:c.A383G:p.Y128C	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.99447	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	104	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9998125	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	108949466	12A2p6	cell line	sgMsh2	108949466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	75	0	0	NA	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.A7147G:p.T2383A	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9565692	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	211	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.361614761	3	0.9992007	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M6_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	424	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.774888773	1	0.9881486	ACA	synonymous	NA	NA	NA	NA
M6_p20	chr8	109803054	12A2p6	cell line	sgMsh2	109803054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	250	0	0	NA	exonic	Ap1g1	synonymous SNV	"Ap1g1:NM_001301211:exon2:c.G105A:p.R35R,Ap1g1:NM_009677:exon2:c.G105A:p.R35R"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	2.38E-09	GGT	synonymous	NA	NA	NA	NA
M6_p20	chr8	110154658	12A2p6	cell line	sgMsh2	110154658	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	115	0	0	NA	exonic	Calb2	nonsynonymous SNV	"Calb2:NM_001368293:exon3:c.G256T:p.A86S,Calb2:NM_007586:exon3:c.G256T:p.A86S"	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9863952	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	110222125	12A2p6	cell line	sgMsh2	110222125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	347	0	0	NA	exonic	Cmtr2	nonsynonymous SNV	Cmtr2:NM_146215:exon2:c.T1066C:p.F356L	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.619911018	2	0.9999983	CTT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M6_p20	chr8	110267353	12A2p6	cell line	sgMsh2	110267353	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	160	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon2:c.A18T:p.K6N	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.999998	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	110450342	12A2p6	cell line	sgMsh2	110450342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	52	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon21:c.A3029G:p.K1010R	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9875423	AAG	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr8	110490782	12A2p6	cell line	sgMsh2	110490782	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	45	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon28:c.T4301A:p.I1434N	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.962740597	1	0.9636744	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	271	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.225422188	3	1.08E-09	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	107	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.624607314	2	0.9780043	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	110817587	12A2p6	cell line	sgMsh2	110817587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	163	0	0	NA	exonic	Sf3b3	nonsynonymous SNV	Sf3b3:NM_133953:exon18:c.A2420G:p.Y807C	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.9703746	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	111075417	12A2p6	cell line	sgMsh2	111075417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	14	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon5:c.T693C:p.C231C	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	3	1	1	0.7804278	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr8	111078787	12A2p6	cell line	sgMsh2	111078787	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	140	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon3:c.T435C:p.A145A	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.765496182	1	0.7606872	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	111102082	12A2p6	cell line	sgMsh2	111102082	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.116	90	0	0	NA	exonic	Pdpr	synonymous SNV	Pdpr:NM_198308:exon2:c.G216A:p.E72E	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9680851	AGC	synonymous	GCAGG	10	GCAGGGCAGG	NA
M6_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	175	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.460236968	2	0.6680974	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	111504389	12A2p6	cell line	sgMsh2	111504389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	225	0	0	NA	exonic	Wdr59	synonymous SNV	"Wdr59:NM_001170742:exon3:c.T186C:p.I62I,Wdr59:NM_001170743:exon3:c.T186C:p.I62I,Wdr59:NM_176923:exon3:c.T186C:p.I62I"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.939259119	1	0.9999992	CAA	synonymous	NA	NA	NA	NA
M6_p20	chr8	111504457	12A2p6	cell line	sgMsh2	111504457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	245	0	0	NA	exonic	Wdr59	nonsynonymous SNV	"Wdr59:NM_001170742:exon3:c.T118C:p.Y40H,Wdr59:NM_001170743:exon3:c.T118C:p.Y40H,Wdr59:NM_176923:exon3:c.T118C:p.Y40H"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.812459138	1	0.996026	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	111688682	12A2p6	cell line	sgMsh2	111688682	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	91	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon5:c.A359C:p.D120A	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.469629559	2	0.7324508	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	111713461	12A2p6	cell line	sgMsh2	111713461	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	108	0	0	NA	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A1900T:p.S634C,Bcar1:NM_009954:exon5:c.A1900T:p.S634C"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.516592515	2	0.9512309	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	111714373	12A2p6	cell line	sgMsh2	111714373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	205	0	0	NA	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A988G:p.T330A,Bcar1:NM_009954:exon5:c.A988G:p.T330A"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.582340654	2	0.9999232	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	112753904	12A2p6	cell line	sgMsh2	112753904	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	394	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon7:c.T982A:p.Y328N	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.685659157	2	0.9990416	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	113737642	12A2p6	cell line	sgMsh2	113737642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	232	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon15:c.A2183C:p.E728A	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	2	1	1	6.94E-09	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	113775269	12A2p6	cell line	sgMsh2	113775269	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	295	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon5:c.C959T:p.T320I	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.999927	TGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	114236652	12A2p6	cell line	sgMsh2	114236652	T	-	Deletion	Mutect2;Vardict	2	0.071	124	0	0	NA	exonic	Vat1l	frameshift deletion	Vat1l:NM_173016:exon3:c.427delT:p.F143Lfs*8	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.333436987	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr8	114712137	12A2p6	cell line	sgMsh2	114712137	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	258	0	0	NA	exonic	Wwox	synonymous SNV	Wwox:NM_019573:exon8:c.C942T:p.R314R	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.525985106	2	0.9991758	GCG	synonymous	NA	NA	NA	NA
M6_p20	chr8	116971476	12A2p6	cell line	sgMsh2	116971476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	79	0	0	NA	exonic	1700030J22Rik	synonymous SNV	"1700030J22Rik:NM_001357253:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357254:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357255:exon3:c.T570C:p.T190T,1700030J22Rik:NM_027103:exon3:c.T891C:p.T297T"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.99091837	1	0.9982251	CAG	synonymous	GTGG	9	GTGGGTGGG	NA
M6_p20	chr8	117596440	12A2p6	cell line	sgMsh2	117596440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	67	0	0	NA	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon20:c.A2233G:p.M745V	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.657481383	2	0.8350913	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	117605210	12A2p6	cell line	sgMsh2	117605210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	390	0	0	NA	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon24:c.T2534C:p.L845P	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.422666603	3	0.9917119	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	117663826	12A2p6	cell line	sgMsh2	117663826	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	95	0	0	NA	exonic	Sdr42e1	synonymous SNV	"Sdr42e1:NM_001357273:exon3:c.C75G:p.G25G,Sdr42e1:NM_028725:exon3:c.C75G:p.G25G,Sdr42e1:NM_001357272:exon4:c.C75G:p.G25G"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.558859176	2	0.9808316	AGC	synonymous	NA	NA	NA	NA
M6_p20	chr8	119533367	12A2p6	cell line	sgMsh2	119533367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	70	0	0	NA	exonic	Mbtps1	nonsynonymous SNV	"Mbtps1:NM_001167910:exon10:c.A1240G:p.S414G,Mbtps1:NM_019709:exon11:c.A1240G:p.S414G"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9970698	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	121796690	12A2p6	cell line	sgMsh2	121796690	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	97	0	0	NA	exonic	Klhdc4	synonymous SNV	Klhdc4:NM_145605:exon12:c.C1612A:p.R538R	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.9996696	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	100	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.986222075	1	0.9996001	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	122439655	12A2p6	cell line	sgMsh2	122439655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	91	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.A242G:p.Q81R	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.807762842	1	0.8829236	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	122468690	12A2p6	cell line	sgMsh2	122468690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	exonic	Rnf166	nonsynonymous SNV	"Rnf166:NM_001033142:exon3:c.T349C:p.C117R,Rnf166:NM_001368370:exon3:c.T22C:p.C8R"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.760799886	1	0.7566644	CAG	nonsynonymous	CAGG	8	CAGGCAGG	NA
M6_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	112	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.67157027	2	0.9132584	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	122634411	12A2p6	cell line	sgMsh2	122634411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	175	0	0	NA	exonic	Cbfa2t3	nonsynonymous SNV	"Cbfa2t3:NM_177289:exon9:c.A1168G:p.T390A,Cbfa2t3:NM_001109873:exon10:c.A1246G:p.T416A,Cbfa2t3:NM_009824:exon10:c.A1351G:p.T451A"	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.680962861	2	0.9628207	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	122813653	12A2p6	cell line	sgMsh2	122813653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	161	0	0	NA	exonic	Acsf3	nonsynonymous SNV	Acsf3:NM_144932:exon9:c.A1589G:p.D530G	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.638696201	2	0.994071	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	122890651	12A2p6	cell line	sgMsh2	122890651	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.118	62	0	0	NA	exonic	Ankrd11	nonsynonymous SNV	Ankrd11:NM_001081379:exon9:c.T6398C:p.L2133P	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.55416288	2	0.9208578	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	123269307	12A2p6	cell line	sgMsh2	123269307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	89	0	0	NA	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon40:c.A3966G:p.L1322L	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.882903572	1	0.9834652	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr8	123282666	12A2p6	cell line	sgMsh2	123282666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	419	0	0	NA	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon29:c.T2786C:p.L929P	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.483718446	2	0.9883716	CAG	nonsynonymous	TTCCAG	12	TTCCAGTTCCAG	NA
M6_p20	chr8	123305856	12A2p6	cell line	sgMsh2	123305856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	164	0	0	NA	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon11:c.T888C:p.P296P	8qE1	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.793673955	1	0.9416851	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	124025157	12A2p6	cell line	sgMsh2	124025157	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	242	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon3:c.C228A:p.N76K,Urb2:NM_001368414:exon3:c.C228A:p.N76K"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999853	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	124025166	12A2p6	cell line	sgMsh2	124025166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	236	0	0	NA	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon3:c.T237C:p.H79H,Urb2:NM_001368414:exon3:c.T237C:p.H79H"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.544770289	2	0.9997308	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr8	124028714	12A2p6	cell line	sgMsh2	124028714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	253	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1159C:p.F387L,Urb2:NM_001368414:exon4:c.T1159C:p.F387L"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.779585069	1	0.9560529	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	204	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.291170327	3	0.9999954	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	125671560	12A2p6	cell line	sgMsh2	125671560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	106	0	0	NA	exonic	Map10	nonsynonymous SNV	Map10:NM_028908:exon1:c.A1691G:p.D564G	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.803066546	1	0.8974874	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	37	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.934562823	1	0.9164992	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr8	126949307	12A2p6	cell line	sgMsh2	126949307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	71	0	0	NA	exonic	Rbm34	synonymous SNV	"Rbm34:NM_001374800:exon10:c.A1197G:p.A399A,Rbm34:NM_172762:exon11:c.A1257G:p.A419A"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	1	1	0.997297	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr8	127474550	12A2p6	cell line	sgMsh2	127474550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	102	0	0	NA	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon21:c.A3303G:p.E1101E,Pard3:NM_001309391:exon22:c.A3348G:p.E1116E,Pard3:NM_001363431:exon22:c.A3258G:p.E1086E,Pard3:NM_001363432:exon22:c.A3354G:p.E1118E,Pard3:NM_033620:exon22:c.A3345G:p.E1115E"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.62930361	2	0.9696161	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr8	128497982	12A2p6	cell line	sgMsh2	128497982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	158	0	0	NA	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon14:c.A2204G:p.Y735C,Nrp1:NM_001358960:exon14:c.A2225G:p.Y742C,Nrp1:NM_008737:exon14:c.A2225G:p.Y742C"	8qE2	chr8-3154030-129138455	5	3	2	0.93	4.367554902	NA	1	0.568251767	2	0.9989978	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	109	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.450844377	2	0.5753486	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	3343162	12A2p6	cell line	sgMsh2	3343162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	233	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T277C:p.S93P	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9991923	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	3458787	12A2p6	cell line	sgMsh2	3458787	-	T	Insertion	Mutect2;Vardict	2	0.143	186	0	0	NA	exonic	Cwf19l2	frameshift insertion	Cwf19l2:NM_027545:exon15:c.2236dupT:p.L747Ffs*3	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.67157027	NA	NA	TCT	frameshift	T	5	TTTTT	1
M6_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	287	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9999937	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	4308732	12A2p6	cell line	sgMsh2	4308732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	300	0	0	NA	exonic;splicing	Aasdhppt;Aasdhppt	nonsynonymous SNV	Aasdhppt:NM_026276:exon2:c.T371C:p.V124A	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5179997	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	4384088	12A2p6	cell line	sgMsh2	4384088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	91	0	0	NA	exonic	Msantd4	synonymous SNV	Msantd4:NM_145609:exon2:c.A408G:p.G136G	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9994632	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	147	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	0.9989352	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	4664969	12A2p6	cell line	sgMsh2	4664969	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.185	121	0	0	NA	exonic	Gria4	frameshift insertion	"Gria4:NM_001113180:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_001113181:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_019691:exon4:c.285dupT:p.G96Wfs*3"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.868814685	NA	NA	CCA	frameshift	A	5	AAAAA	1
M6_p20	chr9	5303669	12A2p6	cell line	sgMsh2	5303669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	260	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon6:c.T754C:p.S252P	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9957965	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	5348935	12A2p6	cell line	sgMsh2	5348935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	298	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon3:c.T296C:p.I99T	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9999989	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	268	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.333436987	3	0.9999943	ATG	synonymous	GAT	8	GATGATGA	NA
M6_p20	chr9	6983433	12A2p6	cell line	sgMsh2	6983433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	83	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon83:c.A12110G:p.N4037S	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	0.9943561	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	6992577	12A2p6	cell line	sgMsh2	6992577	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	80	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon82:c.T11983G:p.F3995V	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9986935	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	7129017	12A2p6	cell line	sgMsh2	7129017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	257	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon35:c.G5497A:p.E1833K	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9985857	TCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	94	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.8779131	TCA	synonymous	NA	NA	NA	NA
M6_p20	chr9	7135090	12A2p6	cell line	sgMsh2	7135090	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	280	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon30:c.T4540G:p.L1514V	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.9992183	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	272	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9898153	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	7455659	12A2p6	cell line	sgMsh2	7455659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	148	0	0	NA	exonic	Mmp3	nonsynonymous SNV	Mmp3:NM_010809:exon10:c.T1409C:p.I470T	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999947	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	7503275	12A2p6	cell line	sgMsh2	7503275	C	G	SNV	Mutect2;MuSe;Vardict	3	0.086	221	0	0	NA	exonic	Mmp10	nonsynonymous SNV	Mmp10:NM_019471:exon2:c.C235G:p.L79V	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.9817162	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	8610048	12A2p6	cell line	sgMsh2	8610048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	319	0	0	NA	exonic	Trpc6	synonymous SNV	"Trpc6:NM_001282086:exon2:c.T516C:p.Y172Y,Trpc6:NM_001282087:exon2:c.T516C:p.Y172Y,Trpc6:NM_013838:exon2:c.T516C:p.Y172Y"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.807762842	1	0.9987346	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	9238774	12A2p6	cell line	sgMsh2	9238774	C	-	Deletion	Strelka2;Vardict	2	0.3333	12	0	0	NA	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372564:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372565:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372566:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372567:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372568:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372569:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372570:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_027823:exon1:c.6delG:p.L3Cfs*37"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M6_p20	chr9	9673855	12A2p6	cell line	sgMsh2	9673855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	125	0	0	NA	exonic	Cntn5	synonymous SNV	"Cntn5:NM_001033359:exon18:c.C2241T:p.Y747Y,Cntn5:NM_001170787:exon22:c.C2856T:p.Y952Y"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.662177679	2	0.9532986	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr9	13782310	12A2p6	cell line	sgMsh2	13782310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	404	0	0	NA	exonic	Mtmr2	synonymous SNV	"Mtmr2:NM_001373873:exon2:c.T114C:p.H38H,Mtmr2:NM_023858:exon2:c.T114C:p.H38H"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9919975	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	13810656	12A2p6	cell line	sgMsh2	13810656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	184	0	0	NA	exonic	Cep57	synonymous SNV	"Cep57:NM_001310721:exon8:c.T1017C:p.T339T,Cep57:NM_026665:exon9:c.T1095C:p.T365T"	9qA1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9986929	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	14786962	12A2p6	cell line	sgMsh2	14786962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	411	0	0	NA	exonic	Mre11a	synonymous SNV	"Mre11a:NM_001310728:exon3:c.T105C:p.D35D,Mre11a:NM_018736:exon3:c.T105C:p.D35D"	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9999996	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.108	116	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9392628	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	15311987	12A2p6	cell line	sgMsh2	15311987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	264	0	0	NA	exonic	Taf1d	nonsynonymous SNV	Taf1d:NM_029248:exon7:c.T935C:p.V312A	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9953025	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	15330553	12A2p6	cell line	sgMsh2	15330553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	179	0	0	NA	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon17:c.A5476G:p.T1826A	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9997554	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	15600919	12A2p6	cell line	sgMsh2	15600919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	227	0	0	NA	exonic	Deup1	nonsynonymous SNV	"Deup1:NM_001373919:exon5:c.A431G:p.K144R,Deup1:NM_001373920:exon5:c.A527G:p.K176R,Deup1:NM_001373917:exon6:c.A527G:p.K176R,Deup1:NM_001373921:exon6:c.A527G:p.K176R,Deup1:NM_181816:exon6:c.A527G:p.K176R,Deup1:NM_001373918:exon7:c.A464G:p.K155R"	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.9778464	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	166	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.474325855	2	0.8290482	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	15999264	12A2p6	cell line	sgMsh2	15999264	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	220	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.C5453A:p.T1818N	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.6350895	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	16029910	12A2p6	cell line	sgMsh2	16029910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	150	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.T4096C:p.Y1366H	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.821851729	1	0.9799525	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	18312832	12A2p6	cell line	sgMsh2	18312832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	244	0	0	NA	exonic	Chordc1	nonsynonymous SNV	Chordc1:NM_025844:exon11:c.A907T:p.T303S	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.670477	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	18945178	12A2p6	cell line	sgMsh2	18945178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	243	0	0	NA	exonic	Olfr832	frameshift deletion	Olfr832:NM_001011824:exon1:c.529delT:p.C179Vfs*23	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.929866528	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr9	19360720	12A2p6	cell line	sgMsh2	19360720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	188	0	0	NA	exonic	Olfr846	nonsynonymous SNV	Olfr846:NM_146282:exon1:c.T634C:p.F212L	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	0.9863063	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	19361075	12A2p6	cell line	sgMsh2	19361075	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	575	0	0	NA	exonic	Olfr846	nonsynonymous SNV	Olfr846:NM_146282:exon1:c.T279G:p.S93R	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	1.01E-09	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	19375606	12A2p6	cell line	sgMsh2	19375606	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	541	0	0	NA	exonic	Olfr847	nonsynonymous SNV	Olfr847:NM_146525:exon1:c.A274G:p.I92V	9qA2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	1.59E-09	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.072	234	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.338133283	3	0.9999568	TAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	19783379	12A2p6	cell line	sgMsh2	19783379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	597	0	0	NA	exonic	Olfr58	nonsynonymous SNV	Olfr58:NM_011001:exon2:c.T245C:p.L82P	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	1.05E-09	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	19921049	12A2p6	cell line	sgMsh2	19921049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	269	0	0	NA	exonic	Olfr77	nonsynonymous SNV	Olfr77:NM_146339:exon3:c.T839C:p.V280A	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.71383693	2	0.9093262	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	20101525	12A2p6	cell line	sgMsh2	20101525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	171	0	0	NA	exonic	Olfr868	synonymous SNV	Olfr868:NM_146559:exon2:c.T765C:p.Y255Y	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.976829483	1	0.9999971	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	20438356	12A2p6	cell line	sgMsh2	20438356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	118	0	0	NA	exonic	Zfp26	nonsynonymous SNV	"Zfp26:NM_001357809:exon10:c.T911G:p.L304R,Zfp26:NM_011753:exon10:c.T911G:p.L304R"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999396	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	20922368	12A2p6	cell line	sgMsh2	20922368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	171	0	0	NA	exonic	Dnmt1	synonymous SNV	"Dnmt1:NM_001199431:exon20:c.T1728C:p.D576D,Dnmt1:NM_001199432:exon20:c.T1371C:p.D457D,Dnmt1:NM_001199433:exon20:c.T1374C:p.D458D,Dnmt1:NM_001314011:exon20:c.T1749C:p.D583D,Dnmt1:NM_010066:exon20:c.T1725C:p.D575D"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9990326	CAT	synonymous	TCA	8	TCATCATC	NA
M6_p20	chr9	21007720	12A2p6	cell line	sgMsh2	21007720	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	111	0	0	NA	exonic	Mrpl4	synonymous SNV	"Mrpl4:NM_001357899:exon7:c.T660C:p.S220S,Mrpl4:NM_023167:exon7:c.T642C:p.S214S"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.6286706	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr9	21149856	12A2p6	cell line	sgMsh2	21149856	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	38	0	0	NA	exonic	Cdc37	nonsynonymous SNV	"Cdc37:NM_001378796:exon1:c.T2G:p.M1R,Cdc37:NM_016742:exon1:c.T2G:p.M1R"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9622963	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	21233517	12A2p6	cell line	sgMsh2	21233517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	53	0	0	NA	exonic	Keap1	nonsynonymous SNV	"Keap1:NM_016679:exon2:c.T1196C:p.M399T,Keap1:NM_001110305:exon3:c.T1196C:p.M399T,Keap1:NM_001110306:exon3:c.T1196C:p.M399T,Keap1:NM_001110307:exon3:c.T1196C:p.M399T"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.886857	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	21343176	12A2p6	cell line	sgMsh2	21343176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	285	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	"Slc44a2:NM_001199186:exon10:c.T746C:p.V249A,Slc44a2:NM_001359227:exon10:c.T746C:p.V249A,Slc44a2:NM_152808:exon10:c.T752C:p.V251A"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9785313	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	21723828	12A2p6	cell line	sgMsh2	21723828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	86	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon1:c.T51C:p.A17A,Ldlr:NM_001252659:exon1:c.T51C:p.A17A,Ldlr:NM_010700:exon1:c.T51C:p.A17A"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9833838	CTG	synonymous	GCT	8	GCTGCTGC	NA
M6_p20	chr9	21739689	12A2p6	cell line	sgMsh2	21739689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	69	0	0	NA	exonic	Ldlr	nonsynonymous SNV	"Ldlr:NM_001252658:exon10:c.A1402G:p.I468V,Ldlr:NM_001252659:exon10:c.A1399G:p.I467V,Ldlr:NM_010700:exon10:c.A1402G:p.I468V"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.8987956	CAT	nonsynonymous	CAT	8	CATCATCA	NA
M6_p20	chr9	22058114	12A2p6	cell line	sgMsh2	22058114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	30	0	0	NA	exonic	Zfp653	synonymous SNV	"Zfp653:NM_001310759:exon4:c.T855C:p.T285T,Zfp653:NM_177318:exon4:c.T855C:p.T285T"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	9.54E-05	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	22887892	12A2p6	cell line	sgMsh2	22887892	A	-	Deletion	Mutect2;Vardict	2	0.218	125	0	0	NA	exonic	Bbs9	stoploss	"Bbs9:NM_001360258:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_181316:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_001360259:exon23:c.2657delA:p.*886delinsCLE*,Bbs9:NM_178415:exon23:c.2642delA:p.*881delinsCLE*"	9qA3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	TAG	nonsynonymous	NA	NA	NA	-1
M6_p20	chr9	24625612	12A2p6	cell line	sgMsh2	24625612	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	230	0	0	NA	exonic	Cypt4	nonsynonymous SNV	Cypt4:NM_173412:exon1:c.C397A:p.P133T	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.7901131	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	25483163	12A2p6	cell line	sgMsh2	25483163	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	53	0	0	NA	exonic	Eepd1	nonsynonymous SNV	Eepd1:NM_026189:exon2:c.T722C:p.I241T	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.521288811	2	0.8482959	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	26768455	12A2p6	cell line	sgMsh2	26768455	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	200	0	0	NA	exonic	Glb1l2	stopgain	"Glb1l2:NM_001310768:exon12:c.C1179A:p.Y393X,Glb1l2:NM_153803:exon13:c.C1227A:p.Y409X"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.998193	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	26844248	12A2p6	cell line	sgMsh2	26844248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	173	0	0	NA	exonic	Glb1l3	nonsynonymous SNV	Glb1l3:NM_001113323:exon9:c.T839C:p.M280T	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.8428945	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	248	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	3	9.47E-09	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	27082519	12A2p6	cell line	sgMsh2	27082519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	237	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A674G:p.Y225C,Ncapd3:NM_178113:exon26:c.A3200G:p.Y1067C"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.925170232	1	0.9999989	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	117	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9967433	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M6_p20	chr9	27319526	12A2p6	cell line	sgMsh2	27319526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	267	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon7:c.A824G:p.D275G,Igsf9b:NM_001384263:exon7:c.A824G:p.D275G,Igsf9b:NM_001384264:exon7:c.A824G:p.D275G"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	1.35E-09	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	27328503	12A2p6	cell line	sgMsh2	27328503	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	50	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001384264:exon13:c.C1655A:p.T552N,Igsf9b:NM_001326702:exon14:c.C1843A:p.P615T,Igsf9b:NM_001384263:exon14:c.C1831A:p.P611T"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.08811608	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	27331757	12A2p6	cell line	sgMsh2	27331757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	69	0	0	NA	exonic	Igsf9b	synonymous SNV	Igsf9b:NM_001326702:exon16:c.T2238C:p.T746T	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.887229	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	34	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.972133188	1	0.9319445	TCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	29179195	12A2p6	cell line	sgMsh2	29179195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	259	0	0	NA	exonic	Ntm	nonsynonymous SNV	"Ntm:NM_001357601:exon2:c.A227G:p.Y76C,Ntm:NM_001357602:exon2:c.A227G:p.Y76C,Ntm:NM_001357593:exon3:c.A227G:p.Y76C,Ntm:NM_001357597:exon3:c.A227G:p.Y76C,Ntm:NM_001357598:exon3:c.A227G:p.Y76C,Ntm:NM_001357603:exon3:c.A155G:p.Y52C,Ntm:NM_172290:exon3:c.A227G:p.Y76C"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999996	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	83	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.455540673	2	0.631201	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	31053521	12A2p6	cell line	sgMsh2	31053521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	286	0	0	NA	exonic	Zbtb44	nonsynonymous SNV	"Zbtb44:NM_001115130:exon2:c.C226T:p.H76Y,Zbtb44:NM_172765:exon2:c.C226T:p.H76Y"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.911081345	1	0.9999998	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	31327436	12A2p6	cell line	sgMsh2	31327436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	78	0	0	NA	exonic	Prdm10	nonsynonymous SNV	"Prdm10:NM_001368845:exon5:c.T623C:p.I208T,Prdm10:NM_001368846:exon5:c.T623C:p.I208T,Prdm10:NM_199315:exon6:c.T623C:p.I208T"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9545961	ATA	nonsynonymous	ATAG	8	ATAGATAG	NA
M6_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	78	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	1	0.9984643	CGC	synonymous	NA	NA	NA	NA
M6_p20	chr9	31426949	12A2p6	cell line	sgMsh2	31426949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	160	0	0	NA	exonic	Tmem45b	nonsynonymous SNV	Tmem45b:NM_144936:exon6:c.A733G:p.T245A	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.999998	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	385	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.356918465	3	0.9999994	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	32260136	12A2p6	cell line	sgMsh2	32260136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	314	0	0	NA	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon13:c.A4211G:p.Y1404C,Arhgap32:NM_001195632:exon22:c.A5258G:p.Y1753C,Arhgap32:NM_001370957:exon22:c.A5138G:p.Y1713C,Arhgap32:NM_001370958:exon23:c.A5180G:p.Y1727C"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9999658	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	35214258	12A2p6	cell line	sgMsh2	35214258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	259	0	0	NA	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon9:c.A1117G:p.M373V	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.648088792	2	0.9994878	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	36257396	12A2p6	cell line	sgMsh2	36257396	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	239	0	0	NA	exonic	Gm3867	frameshift deletion	Gm3867:NM_001361061:exon4:c.231delT:p.R78Vfs*21	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.633999905	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M6_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	272	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	0.9999989	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr9	36863526	12A2p6	cell line	sgMsh2	36863526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	132	0	0	NA	exonic	Fez1	synonymous SNV	"Fez1:NM_001357610:exon5:c.G528A:p.Q176Q,Fez1:NM_001357611:exon5:c.G528A:p.Q176Q,Fez1:NM_001357613:exon5:c.G528A:p.Q176Q,Fez1:NM_001357614:exon5:c.G528A:p.Q176Q,Fez1:NM_183171:exon5:c.G528A:p.Q176Q,Fez1:NM_001357612:exon6:c.G528A:p.Q176Q"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.958044301	1	0.9998888	AGA	synonymous	NA	NA	NA	NA
M6_p20	chr9	37381811	12A2p6	cell line	sgMsh2	37381811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	154	0	0	NA	exonic	Hepacam	nonsynonymous SNV	Hepacam:NM_175189:exon3:c.A697G:p.I233V	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9984899	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Vardict	2	0.104	55	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.488414742	2	0.7711796	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	37427387	12A2p6	cell line	sgMsh2	37427387	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	46	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon6:c.A1024C:p.S342R	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9799098	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	37522884	12A2p6	cell line	sgMsh2	37522884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	57	0	0	NA	exonic	Msantd2	nonsynonymous SNV	Msantd2:NM_146222:exon4:c.T1022C:p.L341P	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.962740597	1	0.9838372	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	146	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999937	TAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	37804586	12A2p6	cell line	sgMsh2	37804586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	485	0	0	NA	exonic	Olfr876	nonsynonymous SNV	Olfr876:NM_146883:exon1:c.T674C:p.L225P	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.666873974	2	0.9999895	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	37855276	12A2p6	cell line	sgMsh2	37855276	-	T	Insertion	Mutect2;Vardict	2	0.127	239	0	0	NA	exonic	Olfr877	frameshift insertion	Olfr877:NM_146417:exon1:c.458dupT:p.G155Wfs*16	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.59642954	NA	NA	AGT	frameshift	ATGGG	11	ATGGGATGGGA	1
M6_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.092	340	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.946971	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr9	38061932	12A2p6	cell line	sgMsh2	38061932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	396	0	0	NA	exonic	Olfr885	nonsynonymous SNV	Olfr885:NM_001011739:exon1:c.T611G:p.V204G	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9999847	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	208	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.9513734	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38116625	12A2p6	cell line	sgMsh2	38116625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	313	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T828C:p.Y276Y	9qA4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.99091837	1	1.02E-09	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	38179964	12A2p6	cell line	sgMsh2	38179964	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	140	0	0	NA	exonic	Olfr891	synonymous SNV	Olfr891:NM_146478:exon1:c.C858T:p.P286P	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	8.77E-06	AGG	synonymous	TAAA	8	TAAATAAA	NA
M6_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	501	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.324044396	3	1.01E-09	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	521	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	1	TTT	synonymous	NA	NA	NA	NA
M6_p20	chr9	38539211	12A2p6	cell line	sgMsh2	38539211	T	-	Deletion	Mutect2;Vardict	2	0.054	678	0	0	NA	exonic	Olfr910	frameshift deletion	Olfr910:NM_146811:exon2:c.315delT:p.F107Lfs*8	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.253599962	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M6_p20	chr9	38606678	12A2p6	cell line	sgMsh2	38606678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	215	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.T212C:p.L71P	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.9999471	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38665642	12A2p6	cell line	sgMsh2	38665642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	83	0	0	NA	exonic	Olfr917	synonymous SNV	Olfr917:NM_001011864:exon1:c.C201T:p.S67S	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.737318408	1	0.5039697	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr9	38698231	12A2p6	cell line	sgMsh2	38698231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	339	0	0	NA	exonic	Olfr919	nonsynonymous SNV	Olfr919:NM_146440:exon1:c.T146C:p.M49T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9999584	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38728677	12A2p6	cell line	sgMsh2	38728677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	301	0	0	NA	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon10:c.T1220C:p.V407A,Vwa5a:NM_172767:exon11:c.T1220C:p.V407A"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.864118389	1	0.9999912	GTT	nonsynonymous	AAGTT	12	AAGTTAAGTTAA	NA
M6_p20	chr9	38734738	12A2p6	cell line	sgMsh2	38734738	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	174	0	0	NA	exonic	Vwa5a	synonymous SNV	"Vwa5a:NM_001145957:exon12:c.T1401C:p.D467D,Vwa5a:NM_172767:exon13:c.T1401C:p.D467D"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5909963	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	38741168	12A2p6	cell line	sgMsh2	38741168	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	43	0	0	NA	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon18:c.A2246G:p.K749R,Vwa5a:NM_172767:exon19:c.A2246G:p.K749R"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9745283	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38775660	12A2p6	cell line	sgMsh2	38775660	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	330	0	0	NA	exonic	Olfr921	nonsynonymous SNV	Olfr921:NM_146782:exon3:c.C404T:p.A135V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9983534	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38775841	12A2p6	cell line	sgMsh2	38775841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	327	0	0	NA	exonic	Olfr921	synonymous SNV	Olfr921:NM_146782:exon3:c.T585C:p.N195N	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9999861	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	255	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.267688849	3	2.00E-08	GCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	383	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.432059195	3	0.9655105	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38877830	12A2p6	cell line	sgMsh2	38877830	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	628	0	0	NA	exonic	Olfr926	nonsynonymous SNV	Olfr926:NM_146815:exon1:c.T653C:p.I218T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	2.33E-08	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	318	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.43675549	3	0.8899308	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr9	38994685	12A2p6	cell line	sgMsh2	38994685	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	245	0	0	NA	exonic	Olfr935	nonsynonymous SNV	Olfr935:NM_146746:exon1:c.T749G:p.V250G	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9883068	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39018653	12A2p6	cell line	sgMsh2	39018653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	207	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.A887G:p.D296G	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.950556	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	230	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.23481478	3	7.73E-09	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	236	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.9696622	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39184300	12A2p6	cell line	sgMsh2	39184300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	401	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.A121G:p.T41A	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.9972393	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39218204	12A2p6	cell line	sgMsh2	39218204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	242	0	0	NA	exonic	Olfr944	synonymous SNV	Olfr944:NM_146507:exon1:c.A846G:p.V282V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.7927775	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	39238389	12A2p6	cell line	sgMsh2	39238389	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	152	0	0	NA	exonic	Olfr1537	nonsynonymous SNV	Olfr1537:NM_207665:exon1:c.T43G:p.F15V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9968445	AAC	nonsynonymous	AAG	8	AAGAAGAA	NA
M6_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	375	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	1	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39426542	12A2p6	cell line	sgMsh2	39426542	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	156	0	0	NA	exonic	Olfr952	nonsynonymous SNV	Olfr952:NM_146503:exon1:c.C528A:p.H176Q	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9972244	AGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39470406	12A2p6	cell line	sgMsh2	39470406	A	G	SNV	Mutect2;MuSe;Vardict	3	0.065	534	0	0	NA	exonic	Olfr955	nonsynonymous SNV	Olfr955:NM_207141:exon1:c.T319C:p.F107L	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.305259214	3	1.00E-09	AAA	nonsynonymous	CAA	9	CAACAACAA	NA
M6_p20	chr9	39470583	12A2p6	cell line	sgMsh2	39470583	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	340	0	0	NA	exonic	Olfr955	nonsynonymous SNV	Olfr955:NM_207141:exon1:c.T142G:p.L48V	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	1.63E-09	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39484543	12A2p6	cell line	sgMsh2	39484543	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	466	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A709T:p.R237W	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.999996	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39510911	12A2p6	cell line	sgMsh2	39510911	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	400	0	0	NA	exonic	Olfr957	nonsynonymous SNV	Olfr957:NM_146745:exon1:c.C808A:p.Q270K	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.998447	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39511354	12A2p6	cell line	sgMsh2	39511354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	309	0	0	NA	exonic	Olfr957	nonsynonymous SNV	Olfr957:NM_146745:exon1:c.G365A:p.R122H	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.35222217	3	0.9999928	GCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39573256	12A2p6	cell line	sgMsh2	39573256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	205	0	0	NA	exonic	Olfr959	nonsynonymous SNV	Olfr959:NM_146508:exon1:c.T2C:p.M1T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.446148081	3	0.5946827	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	337	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9991096	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	39596639	12A2p6	cell line	sgMsh2	39596639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	242	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon11:c.T1200C:p.T400T,AW551984:NM_001359951:exon11:c.T1200C:p.T400T,AW551984:NM_178737:exon11:c.T1200C:p.T400T"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.9949266	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	39719434	12A2p6	cell line	sgMsh2	39719434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	483	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T206C:p.I69T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9967646	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39750389	12A2p6	cell line	sgMsh2	39750389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	122	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.T2C:p.M1T	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.929866528	1	0.9993539	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	411	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.258296258	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	39772775	12A2p6	cell line	sgMsh2	39772775	T	C	SNV	Mutect2;Vardict	2	0.124	131	0	0	NA	exonic	Olfr968	synonymous SNV	Olfr968:NM_146612:exon1:c.A24G:p.G8G	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.582340654	2	0.9972367	CTC	synonymous	NA	NA	NA	NA
M6_p20	chr9	39795557	12A2p6	cell line	sgMsh2	39795557	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	501	0	0	NA	exonic	Olfr969	frameshift deletion	Olfr969:NM_146826:exon1:c.181delT:p.L63Sfs*20	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chr9	39873441	12A2p6	cell line	sgMsh2	39873441	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	530	0	0	NA	exonic	Olfr972	synonymous SNV	Olfr972:NM_146610:exon1:c.A165T:p.L55L	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.9998197	TAC	synonymous	AC	8	ACACACAC	NA
M6_p20	chr9	39873961	12A2p6	cell line	sgMsh2	39873961	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	338	0	0	NA	exonic	Olfr972	frameshift deletion	Olfr972:NM_146610:exon1:c.685delA:p.K229Nfs*56	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	NA	NA	TAA	frameshift	NA	NA	NA	-1
M6_p20	chr9	40333499	12A2p6	cell line	sgMsh2	40333499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	124	0	0	NA	exonic	Gramd1b	synonymous SNV	"Gramd1b:NM_001357618:exon2:c.T180C:p.G60G,Gramd1b:NM_001357619:exon2:c.T207C:p.G69G,Gramd1b:NM_001357620:exon2:c.T180C:p.G60G,Gramd1b:NM_001357621:exon2:c.T180C:p.G60G,Gramd1b:NM_001357623:exon2:c.T207C:p.G69G,Gramd1b:NM_001357617:exon3:c.T261C:p.G87G,Gramd1b:NM_172768:exon3:c.T612C:p.G204G"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.774888773	1	0.8037388	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	45	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.007246588	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	143	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.6669895	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M6_p20	chr9	40978194	12A2p6	cell line	sgMsh2	40978194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	183	0	0	NA	exonic	Crtam	nonsynonymous SNV	"Crtam:NM_001281954:exon8:c.T884C:p.L295P,Crtam:NM_019465:exon8:c.T881C:p.L294P"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9969559	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	42002631	12A2p6	cell line	sgMsh2	42002631	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	135	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon24:c.A2999G:p.N1000S,Sorl1:NM_011436:exon29:c.A4001G:p.N1334S"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.917613	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	111	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9912214	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	44106252	12A2p6	cell line	sgMsh2	44106252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	178	0	0	NA	exonic	Mfrp	nonsynonymous SNV	"Mfrp:NM_001190314:exon13:c.A1522G:p.S508G,Mfrp:NM_147126:exon13:c.A1540G:p.S514G"	9qA5.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.8764491	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44250827	12A2p6	cell line	sgMsh2	44250827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	105	0	0	NA	exonic	Pdzd3	nonsynonymous SNV	Pdzd3:NM_133226:exon3:c.T74C:p.I25T	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9998271	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44263821	12A2p6	cell line	sgMsh2	44263821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	37	0	0	NA	exonic	Nlrx1	synonymous SNV	"Nlrx1:NM_001163742:exon5:c.T657C:p.R219R,Nlrx1:NM_001163743:exon5:c.T657C:p.R219R,Nlrx1:NM_178420:exon5:c.T657C:p.R219R"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9592453	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.148	44	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.695051748	2	0.006406986	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44694061	12A2p6	cell line	sgMsh2	44694061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	185	0	0	NA	exonic	Phldb1	nonsynonymous SNV	Phldb1:NM_153537:exon20:c.A3857G:p.D1286G	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9959907	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44711013	12A2p6	cell line	sgMsh2	44711013	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	44	0	0	NA	exonic	Phldb1	synonymous SNV	Phldb1:NM_153537:exon9:c.A2304G:p.R768R	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.7925141	CTC	synonymous	GCTC	8	GCTCGCTC	NA
M6_p20	chr9	44743959	12A2p6	cell line	sgMsh2	44743959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	59	0	0	NA	exonic	Arcn1	nonsynonymous SNV	Arcn1:NM_145985:exon10:c.A1504G:p.T502A	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9928923	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44810718	12A2p6	cell line	sgMsh2	44810718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	125	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon33:c.T11329C:p.F3777L	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.8326797	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44814689	12A2p6	cell line	sgMsh2	44814689	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.113	76	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon30:c.C10939T:p.L3647F	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9306576	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	44823338	12A2p6	cell line	sgMsh2	44823338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	382	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6206G:p.Y2069C	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.9999976	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	45183178	12A2p6	cell line	sgMsh2	45183178	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	205	0	0	NA	exonic	Tmprss4	nonsynonymous SNV	"Tmprss4:NM_001364528:exon5:c.G14T:p.S5I,Tmprss4:NM_145403:exon5:c.G434T:p.S145I"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.760799886	1	0.7881729	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	45266583	12A2p6	cell line	sgMsh2	45266583	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	243	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon3:c.G242A:p.C81Y,Il10ra:NM_008348:exon3:c.G248A:p.C83Y"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9992206	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	45447928	12A2p6	cell line	sgMsh2	45447928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	80	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon2:c.A310G:p.T104A	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9585123	CAC	nonsynonymous	CTGCA	10	CTGCACTGCA	NA
M6_p20	chr9	45916032	12A2p6	cell line	sgMsh2	45916032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	170	0	0	NA	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon9:c.T1096C:p.C366R,Pcsk7:NM_008794:exon9:c.T1096C:p.C366R"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999991	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	45944380	12A2p6	cell line	sgMsh2	45944380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_172257:exon17:c.A1600G:p.N534D,Sidt2:NM_001289668:exon18:c.A1663G:p.N555D,Sidt2:NM_001359653:exon18:c.A1612G:p.N538D"	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.998335	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	58	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.09188308	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	46283050	12A2p6	cell line	sgMsh2	46283050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	45	0	0	NA	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon1:c.T20G:p.L7R	9qA5.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9782528	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	48604898	12A2p6	cell line	sgMsh2	48604898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	98	0	0	NA	exonic	Nnmt	synonymous SNV	"Nnmt:NM_001311062:exon1:c.T61C:p.L21L,Nnmt:NM_010924:exon1:c.T61C:p.L21L"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9692835	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	49037852	12A2p6	cell line	sgMsh2	49037852	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	114	0	0	NA	exonic	Usp28	nonsynonymous SNV	"Usp28:NM_175482:exon22:c.G2745T:p.K915N,Usp28:NM_001359739:exon23:c.G2841T:p.K947N"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9105984	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	49268648	12A2p6	cell line	sgMsh2	49268648	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	174	0	0	NA	exonic	Gm4894	nonsynonymous SNV	Gm4894:NM_177701:exon2:c.A77T:p.E26V	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999994	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	50649706	12A2p6	cell line	sgMsh2	50649706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	124	0	0	NA	exonic	Dlat	nonsynonymous SNV	Dlat:NM_145614:exon7:c.A1040G:p.K347R	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9960026	CTT	nonsynonymous	CCCTT	10	CCCTTCCCTT	NA
M6_p20	chr9	50740565	12A2p6	cell line	sgMsh2	50740565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	251	0	0	NA	exonic	2310030G06Rik	nonsynonymous SNV	2310030G06Rik:NM_025865:exon4:c.A320G:p.Y107C	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9685679	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	50862464	12A2p6	cell line	sgMsh2	50862464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	206	0	0	NA	exonic	Ppp2r1b	nonsynonymous SNV	"Ppp2r1b:NM_001034085:exon5:c.T638C:p.V213A,Ppp2r1b:NM_001286553:exon5:c.T638C:p.V213A,Ppp2r1b:NM_028614:exon5:c.T638C:p.V213A"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.9722127	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	51943627	12A2p6	cell line	sgMsh2	51943627	A	-	Deletion	Mutect2;Vardict	2	0.172	271	0	0	NA	exonic	Fdx1	frameshift deletion	Fdx1:NM_007996:exon4:c.475delT:p.C159Vfs*1	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.807762842	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr9	52085321	12A2p6	cell line	sgMsh2	52085321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	171	0	0	NA	exonic	Rdx	synonymous SNV	"Rdx:NM_001104616:exon13:c.T1563C:p.N521N,Rdx:NM_009041:exon13:c.T1563C:p.N521N"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9995257	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	296	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.399185125	3	0.9977323	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	53393991	12A2p6	cell line	sgMsh2	53393991	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.135	64	0	0	NA	exonic	Poglut3	synonymous SNV	Poglut3:NM_212445:exon5:c.G945A:p.R315R	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.633999905	2	0.8782024	GGG	synonymous	NA	NA	NA	NA
M6_p20	chr9	53425655	12A2p6	cell line	sgMsh2	53425655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	247	0	0	NA	exonic	4930550C14Rik	synonymous SNV	"4930550C14Rik:NM_001376945:exon5:c.T258C:p.D86D,4930550C14Rik:NM_001376943:exon7:c.T693C:p.D231D,4930550C14Rik:NM_001376944:exon7:c.T693C:p.D231D,4930550C14Rik:NM_029247:exon7:c.T693C:p.D231D"	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9530544	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	285	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.417970308	3	0.9785313	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	53490136	12A2p6	cell line	sgMsh2	53490136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	99	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon29:c.A4432G:p.T1478A	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	6.43E-06	GTA	nonsynonymous	ATAA	8	ATAAATAA	NA
M6_p20	chr9	53500806	12A2p6	cell line	sgMsh2	53500806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	251	0	0	NA	exonic	Atm	synonymous SNV	Atm:NM_007499:exon20:c.A2949G:p.R983R	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.850029502	1	0.9998205	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr9	53563665	12A2p6	cell line	sgMsh2	53563665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	169	0	0	NA	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon13:c.A2756G:p.N919S	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.9999974	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	53570988	12A2p6	cell line	sgMsh2	53570988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	124	0	0	NA	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon17:c.T3995G:p.L1332R	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	9.37E-06	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	54446743	12A2p6	cell line	sgMsh2	54446743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	358	0	0	NA	exonic	Dmxl2	nonsynonymous SNV	Dmxl2:NM_172771:exon12:c.G1940A:p.G647D	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.9999562	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	169	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.460236968	2	0.66789	CAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	56147420	12A2p6	cell line	sgMsh2	56147420	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	122	0	0	NA	exonic	Tspan3	synonymous SNV	Tspan3:NM_019793:exon2:c.T222A:p.A74A	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.83124432	1	0.9722099	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	332	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M6_p20	chr9	56489931	12A2p6	cell line	sgMsh2	56489931	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	128	0	0	NA	exonic	Hmg20a	synonymous SNV	Hmg20a:NM_025812:exon9:c.A1014C:p.R338R	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.746710999	1	0.5779078	GAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	56885911	12A2p6	cell line	sgMsh2	56885911	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	136	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.A929C:p.N310T	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.9728038	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	56918565	12A2p6	cell line	sgMsh2	56918565	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	34	0	0	NA	exonic	Snx33	synonymous SNV	Snx33:NM_175483:exon2:c.C1611A:p.R537R	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9486092	GGC	synonymous	NA	NA	NA	NA
M6_p20	chr9	56982712	12A2p6	cell line	sgMsh2	56982712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	81	0	0	NA	exonic	Snupn	synonymous SNV	Snupn:NM_178374:exon9:c.T816C:p.S272S	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.737318408	1	5.33E-05	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr9	57096822	12A2p6	cell line	sgMsh2	57096822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	135	0	0	NA	exonic	Sin3a	nonsynonymous SNV	"Sin3a:NM_001110350:exon6:c.T857C:p.V286A,Sin3a:NM_001357754:exon6:c.T857C:p.V286A,Sin3a:NM_001110351:exon7:c.T857C:p.V286A,Sin3a:NM_011378:exon7:c.T857C:p.V286A"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9943611	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	57107428	12A2p6	cell line	sgMsh2	57107428	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	152	0	0	NA	exonic	Sin3a	synonymous SNV	"Sin3a:NM_001110350:exon13:c.G1932A:p.L644L,Sin3a:NM_001357754:exon13:c.G1932A:p.L644L,Sin3a:NM_001110351:exon14:c.G1932A:p.L644L,Sin3a:NM_011378:exon14:c.G1932A:p.L644L"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.7240849	TGT	synonymous	NA	NA	NA	NA
M6_p20	chr9	57592934	12A2p6	cell line	sgMsh2	57592934	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	92	0	0	NA	exonic	Ulk3	nonsynonymous SNV	Ulk3:NM_027895:exon7:c.A812G:p.D271G	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.483718446	2	0.8171692	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	57612601	12A2p6	cell line	sgMsh2	57612601	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	220	0	0	NA	exonic	Lman1l	nonsynonymous SNV	Lman1l:NM_199222:exon7:c.C752T:p.T251I	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.676266565	2	0.9885527	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	57629290	12A2p6	cell line	sgMsh2	57629290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	81	0	0	NA	exonic	Csk	nonsynonymous SNV	"Csk:NM_007783:exon6:c.A526G:p.T176A,Csk:NM_001304761:exon8:c.A526G:p.T176A"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.67157027	2	0.8393473	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	201	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.201940711	3	7.53E-09	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	58908457	12A2p6	cell line	sgMsh2	58908457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	214	0	0	NA	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon16:c.A2534G:p.N845S,Neo1:NM_008684:exon16:c.A2534G:p.N845S"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.826548024	1	0.9969674	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	58921767	12A2p6	cell line	sgMsh2	58921767	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	204	0	0	NA	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon10:c.G1848T:p.Q616H,Neo1:NM_008684:exon10:c.G1848T:p.Q616H"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.55416288	2	0.9996302	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	170	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.361614761	3	0.9963694	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	157	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9986648	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	59868201	12A2p6	cell line	sgMsh2	59868201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	337	0	0	NA	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon23:c.A3094G:p.R1032G	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.591733245	2	0.9999998	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	176	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.258296258	3	0.9999969	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	62060180	12A2p6	cell line	sgMsh2	62060180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	85	0	0	NA	exonic	Glce	nonsynonymous SNV	"Glce:NM_001368304:exon4:c.T1688C:p.L563P,Glce:NM_033320:exon5:c.T1688C:p.L563P"	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.887599867	1	0.9826231	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	62282046	12A2p6	cell line	sgMsh2	62282046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	245	0	0	NA	exonic	Spesp1	nonsynonymous SNV	Spesp1:NM_025721:exon1:c.T17C:p.L6P	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9988824	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	62882039	12A2p6	cell line	sgMsh2	62882039	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	112	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.G1885T:p.V629L	9qB	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.0925301	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	63639130	12A2p6	cell line	sgMsh2	63639130	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	145	0	0	NA	exonic	Aagab	stopgain	"Aagab:NM_001357323:exon8:c.T806G:p.L269X,Aagab:NM_025857:exon8:c.T809G:p.L270X"	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9848917	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	64122225	12A2p6	cell line	sgMsh2	64122225	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.091	122	0	0	NA	exonic	Lctl	synonymous SNV	Lctl:NM_145835:exon6:c.T597C:p.S199S	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.6940141	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	64212673	12A2p6	cell line	sgMsh2	64212673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	68	0	0	NA	exonic	Map2k1	nonsynonymous SNV	Map2k1:NM_008927:exon3:c.G349T:p.V117L	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9965567	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	64330817	12A2p6	cell line	sgMsh2	64330817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	112	0	0	NA	exonic	Dis3l	nonsynonymous SNV	"Dis3l:NM_001001295:exon3:c.A392G:p.K131R,Dis3l:NM_001177784:exon3:c.A143G:p.K48R,Dis3l:NM_172519:exon3:c.A143G:p.K48R"	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.784304	CTT	nonsynonymous	C	5	CCCCC	NA
M6_p20	chr9	65703433	12A2p6	cell line	sgMsh2	65703433	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.167	38	0	0	NA	exonic	Zfp609	synonymous SNV	Zfp609:NM_172536:exon5:c.A2247G:p.V749V	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.6577844	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	354	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.309955509	3	5.13E-09	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	66372540	12A2p6	cell line	sgMsh2	66372540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	188	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon2:c.T729C:p.G243G	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	2	0.9943822	GTC	synonymous	NA	NA	NA	NA
M6_p20	chr9	66386829	12A2p6	cell line	sgMsh2	66386829	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	202	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon5:c.T1452C:p.D484D	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.267688849	3	0.9999991	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	66445540	12A2p6	cell line	sgMsh2	66445540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	323	0	0	NA	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon35:c.A6307G:p.T2103A	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9874352	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	114	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7489675	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M6_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	364	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.385096239	3	0.9999303	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	46	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9799098	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	69467368	12A2p6	cell line	sgMsh2	69467368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	384	0	0	NA	exonic	Anxa2	synonymous SNV	Anxa2:NM_007585:exon3:c.T126C:p.I42I	9qC	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	1.00E-09	TTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.575	63	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	1	0.9948479	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr9	70419008	12A2p6	cell line	sgMsh2	70419008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	343	0	0	NA	exonic	Ccnb2	nonsynonymous SNV	Ccnb2:NM_007630:exon2:c.T146C:p.V49A	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.78897766	1	0.9941273	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	70580236	12A2p6	cell line	sgMsh2	70580236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	57	0	0	NA	exonic	Sltm	synonymous SNV	"Sltm:NM_001357911:exon12:c.T1323C:p.D441D,Sltm:NM_025690:exon12:c.T1551C:p.D517D,Sltm:NM_026337:exon12:c.T1497C:p.D499D"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9916538	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	71716549	12A2p6	cell line	sgMsh2	71716549	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	57	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon6:c.A1901T:p.Q634L,Cgnl1:NM_026599:exon6:c.A1901T:p.Q634L"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.939259119	1	0.9755709	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	71725437	12A2p6	cell line	sgMsh2	71725437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	164	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A631G:p.K211E,Cgnl1:NM_026599:exon2:c.A631G:p.K211E"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.9733509	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	73	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9556445	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	72617209	12A2p6	cell line	sgMsh2	72617209	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	39	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A1680C:p.K560N	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.7571503	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	72694422	12A2p6	cell line	sgMsh2	72694422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	123	0	0	NA	exonic	Nedd4	synonymous SNV	Nedd4:NM_001357998:exon1:c.T984C:p.C328C	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999597	GTG	synonymous	TG	8	TGTGTGTG	NA
M6_p20	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	154	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.9988513	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	73012712	12A2p6	cell line	sgMsh2	73012712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	34	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286544:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286545:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286546:exon8:c.A1308C:p.K436N,Ccpg1:NM_028181:exon8:c.A1608C:p.K536N,Ccpg1:NM_001359295:exon9:c.A1704C:p.K568N,Ccpg1:NM_001359296:exon9:c.A1704C:p.K568N"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9486092	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	73017490	12A2p6	cell line	sgMsh2	73017490	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	238	0	0	NA	exonic	Pigb	synonymous SNV	Pigb:NM_018889:exon11:c.A1386T:p.A462A	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.793673955	1	0.981347	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	73034488	12A2p6	cell line	sgMsh2	73034488	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	264	0	0	NA	exonic	Pigb	nonsynonymous SNV	Pigb:NM_018889:exon4:c.T488C:p.V163A	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.314651805	3	0.9999989	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	157	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.563555471	2	0.9987282	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	73931436	12A2p6	cell line	sgMsh2	73931436	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	358	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.C2132A:p.T711N	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.779585069	1	0.9864785	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	73931834	12A2p6	cell line	sgMsh2	73931834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	90	0	0	NA	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.T1734C:p.L578L	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9554191	AAA	synonymous	NA	NA	NA	NA
M6_p20	chr9	75006449	12A2p6	cell line	sgMsh2	75006449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	249	0	0	NA	exonic	Fam214a	synonymous SNV	"Fam214a:NM_153584:exon3:c.A384G:p.A128A,Fam214a:NM_001113283:exon4:c.A363G:p.A121A,Fam214a:NM_001359816:exon4:c.A363G:p.A121A"	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	7.39E-09	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	297	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.389792534	3	0.9992236	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	76952029	12A2p6	cell line	sgMsh2	76952029	A	-	Deletion	Mutect2;Vardict	2	0.248	118	0	0	NA	exonic	Tinag	frameshift deletion	Tinag:NM_012033:exon11:c.1296delT:p.I432Mfs*21	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M6_p20	chr9	77032432	12A2p6	cell line	sgMsh2	77032432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	247	0	0	NA	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon2:c.A410G:p.N137S	9qD	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.8504532	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	78059630	12A2p6	cell line	sgMsh2	78059630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	156	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon3:c.A130G:p.I44V	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.507199924	2	0.969384	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	78098394	12A2p6	cell line	sgMsh2	78098394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	337	0	0	NA	exonic	Fbxo9	nonsynonymous SNV	"Fbxo9:NM_001081490:exon5:c.A359G:p.K120R,Fbxo9:NM_023605:exon5:c.A356G:p.K119R"	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.8735742	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	266	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.525985106	2	0.9993247	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	163	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999984	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	165	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.441451786	3	7.21E-08	GTT	synonymous	NA	NA	NA	NA
M6_p20	chr9	79682114	12A2p6	cell line	sgMsh2	79682114	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	196	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon15:c.A3158G:p.K1053R	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	0.9995078	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	79818911	12A2p6	cell line	sgMsh2	79818911	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	89	0	0	NA	exonic	Filip1	nonsynonymous SNV	"Filip1:NM_001357354:exon2:c.G1681A:p.A561T,Filip1:NM_001081243:exon5:c.G2425A:p.A809T,Filip1:NM_001357352:exon5:c.G2470A:p.A824T,Filip1:NM_001357353:exon5:c.G2425A:p.A809T"	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.756103591	1	9.20E-06	GCC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	82025664	12A2p6	cell line	sgMsh2	82025664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	290	0	0	NA	exonic	Mei4	nonsynonymous SNV	"Mei4:NM_001357479:exon4:c.A749G:p.K250R,Mei4:NM_175213:exon5:c.A1046G:p.K349R"	9qE1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.934562823	1	2.24E-08	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	82876063	12A2p6	cell line	sgMsh2	82876063	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	278	0	0	NA	exonic	Phip	nonsynonymous SNV	Phip:NM_001081216:exon38:c.G4576A:p.A1526T	9qE2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.225422188	3	1.04E-09	GCT	nonsynonymous	TGA	8	TGATGATG	NA
M6_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	228	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.295866622	3	0.9999985	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	83847153	12A2p6	cell line	sgMsh2	83847153	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	231	0	0	NA	exonic	Ttk	nonsynonymous SNV	"Ttk:NM_001110265:exon10:c.T988A:p.L330M,Ttk:NM_001284272:exon10:c.T988A:p.L330M,Ttk:NM_009445:exon10:c.T988A:p.L330M"	9qE2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	7.44E-09	TTT	nonsynonymous	CTAT	8	CTATCTAT	NA
M6_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	141	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9886083	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	86559478	12A2p6	cell line	sgMsh2	86559478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	142	0	0	NA	exonic	Pgm3	synonymous SNV	"Pgm3:NM_001163746:exon9:c.T1065C:p.H355H,Pgm3:NM_028352:exon9:c.T1065C:p.H355H"	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.9983753	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	84	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.7942592	TTT	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr9	87707833	12A2p6	cell line	sgMsh2	87707833	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	143	0	0	NA	exonic	Tbx18	nonsynonymous SNV	Tbx18:NM_023814:exon7:c.T1051A:p.Y351N	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.572948062	2	0.9982916	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	88462956	12A2p6	cell line	sgMsh2	88462956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	142	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.A713C:p.K238T,Syncrip:NM_001284328:exon8:c.A1007C:p.K336T,Syncrip:NM_019666:exon8:c.A1007C:p.K336T,Syncrip:NM_019796:exon8:c.A1007C:p.K336T"	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.798370251	1	0.9334343	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	88480612	12A2p6	cell line	sgMsh2	88480612	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	115	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001284328:exon2:c.G142A:p.V48I,Syncrip:NM_019666:exon2:c.G142A:p.V48I,Syncrip:NM_019796:exon2:c.G142A:p.V48I"	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.6729343	ACG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	88582205	12A2p6	cell line	sgMsh2	88582205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	177	0	0	NA	exonic	Trim43a	synonymous SNV	"Trim43a:NM_001034906:exon2:c.T168C:p.C56C,Trim43a:NM_001357687:exon2:c.T168C:p.C56C"	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.878207276	1	0.9995479	GTA	synonymous	NA	NA	NA	NA
M6_p20	chr9	89602722	12A2p6	cell line	sgMsh2	89602722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	121	0	0	NA	exonic	Minar1	synonymous SNV	Minar1:NM_153509:exon2:c.G621A:p.Q207Q	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.530681402	2	0.9798321	GCT	synonymous	NA	NA	NA	NA
M6_p20	chr9	90093785	12A2p6	cell line	sgMsh2	90093785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	268	0	0	NA	exonic	Morf4l1	nonsynonymous SNV	"Morf4l1:NM_024431:exon11:c.T836C:p.L279P,Morf4l1:NM_001039147:exon12:c.T953C:p.L318P,Morf4l1:NM_001357780:exon12:c.T950C:p.L317P"	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.474325855	2	0.8943488	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	90223478	12A2p6	cell line	sgMsh2	90223478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	149	0	0	NA	exonic	Tbc1d2b	synonymous SNV	Tbc1d2b:NM_194334:exon7:c.A1548T:p.R516R	9qE3.1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.835940616	1	0.9892882	TTC	synonymous	NA	NA	NA	NA
M6_p20	chr9	91364112	12A2p6	cell line	sgMsh2	91364112	A	-	Deletion	Mutect2;Vardict	2	0.139	158	0	0	NA	exonic	Zic1	frameshift deletion	"Zic1:NM_009573:exon1:c.906delT:p.C304Afs*77,Zic1:NM_001376941:exon2:c.906delT:p.C304Afs*77"	9qE3.2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.652785087	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chr9	95462729	12A2p6	cell line	sgMsh2	95462729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	237	0	0	NA	exonic	U2surp	synonymous SNV	"U2surp:NM_001357977:exon25:c.T1698C:p.P566P,U2surp:NM_001357975:exon26:c.T2790C:p.P930P,U2surp:NM_001357976:exon26:c.T1698C:p.P566P,U2surp:NM_026476:exon26:c.T2793C:p.P931P,U2surp:NM_001114977:exon27:c.T2925C:p.P975P,U2surp:NM_001357974:exon27:c.T2922C:p.P974P"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.803066546	1	0.9905099	TAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	95678362	12A2p6	cell line	sgMsh2	95678362	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	91	0	0	NA	exonic	Pcolce2	stopgain	Pcolce2:NM_029620:exon4:c.G463T:p.G155X	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.709140635	2	0.6911704	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	95706957	12A2p6	cell line	sgMsh2	95706957	T	-	Deletion	Mutect2;Vardict	2	0.095	149	0	0	NA	exonic	Trpc1	frameshift deletion	"Trpc1:NM_001311123:exon12:c.2063delA:p.N688Tfs*1,Trpc1:NM_011643:exon13:c.2165delA:p.N722Tfs*1"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.446148081	NA	NA	GTT	frameshift	NA	NA	NA	-1
M6_p20	chr9	95721213	12A2p6	cell line	sgMsh2	95721213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	239	0	0	NA	exonic	Trpc1	nonsynonymous SNV	"Trpc1:NM_001311123:exon6:c.T1115C:p.L372P,Trpc1:NM_011643:exon7:c.T1217C:p.L406P"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.493111037	2	0.9751142	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	95865695	12A2p6	cell line	sgMsh2	95865695	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	266	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon4:c.T1029G:p.D343E	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.882903572	1	0.9999931	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	95907371	12A2p6	cell line	sgMsh2	95907371	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	513	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon26:c.T4579C:p.Y1527H	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.347525874	3	1.74E-09	CTA	nonsynonymous	ATCT	8	ATCTATCT	NA
M6_p20	chr9	95945351	12A2p6	cell line	sgMsh2	95945351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	264	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7348G:p.S2450G	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.859422094	1	0.9999469	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	95945356	12A2p6	cell line	sgMsh2	95945356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	277	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7353C:p.R2451S	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.840636911	1	0.9998304	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	137	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.51189622	2	0.9663402	GAA	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr9	97365830	12A2p6	cell line	sgMsh2	97365830	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	67	0	0	NA	exonic	Trim42	nonsynonymous SNV	Trim42:NM_030219:exon2:c.C812T:p.A271V	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.7195896	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	97570592	12A2p6	cell line	sgMsh2	97570592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	142	0	0	NA	exonic	Clstn2	nonsynonymous SNV	Clstn2:NM_022319:exon5:c.A761G:p.D254G	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.845333207	1	0.9913436	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	203	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9978001	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	172	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9338176	TAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	99583360	12A2p6	cell line	sgMsh2	99583360	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	103	0	0	NA	exonic	Dbr1	nonsynonymous SNV	"Dbr1:NM_001368298:exon7:c.A909C:p.K303N,Dbr1:NM_031403:exon8:c.A990C:p.K330N"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9997967	AAT	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	433	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.427362899	3	0.9902483	GAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	101101410	12A2p6	cell line	sgMsh2	101101410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	170	0	0	NA	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T982C:p.C328R,Msl2:NM_001379344:exon3:c.T760C:p.C254R"	9qE4	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.920473936	1	0.9999366	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	102730061	12A2p6	cell line	sgMsh2	102730061	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	31	0	0	NA	exonic	Amotl2	nonsynonymous SNV	Amotl2:NM_019764:exon8:c.G1968T:p.Q656H	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.817155433	1	0.7069051	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	103343982	12A2p6	cell line	sgMsh2	103343982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	0	0	NA	exonic	Topbp1	nonsynonymous SNV	Topbp1:NM_176979:exon23:c.T3805C:p.S1269P	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9992582	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	104004794	12A2p6	cell line	sgMsh2	104004794	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.156	143	0	0	NA	exonic	Nphp3	synonymous SNV	"Nphp3:NM_028721:exon2:c.G462A:p.A154A,Nphp3:NM_172460:exon2:c.G462A:p.A154A"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.732622113	2	0.5751012	CGG	synonymous	NA	NA	NA	NA
M6_p20	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	390	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.371007352	3	0.9999958	AAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	104200481	12A2p6	cell line	sgMsh2	104200481	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	274	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon26:c.A2830C:p.T944P,Dnajc13:NM_001359740:exon27:c.A2845C:p.T949P"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.380399943	3	0.9994596	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	104218563	12A2p6	cell line	sgMsh2	104218563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	111	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon15:c.A1677G:p.V559V,Dnajc13:NM_001359740:exon15:c.A1677G:p.V559V"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.8423053	CTA	synonymous	NA	NA	NA	NA
M6_p20	chr9	105022375	12A2p6	cell line	sgMsh2	105022375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	193	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.A1310G:p.K437R,Cpne4:NM_001378996:exon14:c.A1280G:p.K427R,Cpne4:NM_028719:exon14:c.A1256G:p.K419R"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9999269	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	105073826	12A2p6	cell line	sgMsh2	105073826	-	A	Insertion	Mutect2;Vardict	2	0.075	195	0	0	NA	exonic	Mrpl3	frameshift insertion	"Mrpl3:NM_001364512:exon8:c.476dupA:p.N160Kfs*28,Mrpl3:NM_001364513:exon8:c.791dupA:p.N265Kfs*28,Mrpl3:NM_053159:exon8:c.791dupA:p.N265Kfs*28"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.35222217	NA	NA	CCA	frameshift	NA	NA	NA	1
M6_p20	chr9	105414742	12A2p6	cell line	sgMsh2	105414742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	172	0	0	NA	exonic	Atp2c1	nonsynonymous SNV	"Atp2c1:NM_001253831:exon26:c.A2620G:p.N874D,Atp2c1:NM_001359823:exon26:c.A2470G:p.N824D,Atp2c1:NM_001253834:exon27:c.A2518G:p.N840D,Atp2c1:NM_175025:exon27:c.A2518G:p.N840D,Atp2c1:NM_001359822:exon28:c.A2530G:p.N844D"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.718533226	2	0.7614259	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	105418083	12A2p6	cell line	sgMsh2	105418083	A	-	Deletion	Mutect2;Vardict	2	0.144	311	0	0	NA	exonic	Atp2c1	frameshift deletion	"Atp2c1:NM_001253831:exon25:c.2553delT:p.F851Lfs*6,Atp2c1:NM_001359823:exon25:c.2403delT:p.F801Lfs*6,Atp2c1:NM_001253834:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_175025:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_001359822:exon27:c.2463delT:p.F821Lfs*6"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.676266565	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M6_p20	chr9	105699314	12A2p6	cell line	sgMsh2	105699314	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	101	0	0	NA	exonic	Col6a6	nonsynonymous SNV	Col6a6:NM_001102607:exon35:c.C5846T:p.A1949V	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.624607314	2	0.9725148	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	150	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	2	1	1	0.9999955	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.068	120	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	0.996583	CAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	62	0	0	NA	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.87351098	1	0.9377637	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	106627561	12A2p6	cell line	sgMsh2	106627561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	exonic	Iqcf6	synonymous SNV	Iqcf6:NM_001101628:exon2:c.T390C:p.Y130Y	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.896992458	1	0.9735973	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	106844234	12A2p6	cell line	sgMsh2	106844234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	374	0	0	NA	exonic	Dcaf1	synonymous SNV	"Dcaf1:NM_001015507:exon9:c.T1224A:p.A408A,Dcaf1:NM_001373930:exon9:c.T1224A:p.A408A"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.638696201	2	0.9999945	CTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	106846756	12A2p6	cell line	sgMsh2	106846756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	154	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon9:c.T1223C:p.M408T,Dcaf1:NM_001015507:exon10:c.T1382C:p.M461T,Dcaf1:NM_001373930:exon10:c.T1382C:p.M461T"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	0.999992	ATG	nonsynonymous	T	5	TTTTT	NA
M6_p20	chr9	107526094	12A2p6	cell line	sgMsh2	107526094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	184	0	0	NA	exonic	Cacna2d2	nonsynonymous SNV	"Cacna2d2:NM_001174048:exon32:c.A2753G:p.N918S,Cacna2d2:NM_001174049:exon32:c.A2750G:p.N917S,Cacna2d2:NM_001174050:exon32:c.A2753G:p.N918S,Cacna2d2:NM_001174047:exon33:c.A2771G:p.N924S,Cacna2d2:NM_020263:exon33:c.A2771G:p.N924S"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.9280281	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	93	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.690355452	2	0.7984556	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	107788136	12A2p6	cell line	sgMsh2	107788136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	240	0	0	NA	exonic	Rbm6	synonymous SNV	"Rbm6:NM_011251:exon13:c.T2316C:p.S772S,Rbm6:NM_029169:exon13:c.T1920C:p.S640S"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.328740692	3	0.999986	AAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	107788148	12A2p6	cell line	sgMsh2	107788148	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	248	0	0	NA	exonic	Rbm6	nonsynonymous SNV	"Rbm6:NM_011251:exon13:c.T2304A:p.N768K,Rbm6:NM_029169:exon13:c.T1908A:p.N636K"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.3193481	3	0.9999961	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	107929742	12A2p6	cell line	sgMsh2	107929742	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	69	0	0	NA	exonic	Actl11	nonsynonymous SNV	Actl11:NM_026338:exon1:c.G1263T:p.Q421H	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.812459138	1	8.46E-06	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	107963385	12A2p6	cell line	sgMsh2	107963385	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	51	0	0	NA	exonic	Traip	synonymous SNV	Traip:NM_011634:exon10:c.C852A:p.T284T	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9865062	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr9	107978769	12A2p6	cell line	sgMsh2	107978769	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	308	0	0	NA	exonic	Uba7	synonymous SNV	Uba7:NM_023738:exon12:c.C1416A:p.P472P	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.403881421	3	0.9970295	CCA	synonymous	NA	NA	NA	NA
M6_p20	chr9	107980081	12A2p6	cell line	sgMsh2	107980081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	98	0	0	NA	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon18:c.A2141G:p.H714R	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.587036949	2	0.9859585	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	171	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.516592515	2	0.9869711	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108083085	12A2p6	cell line	sgMsh2	108083085	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	235	0	0	NA	exonic	Mst1	nonsynonymous SNV	Mst1:NM_008243:exon10:c.G1189T:p.G397C	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.59642954	2	0.9999742	GGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	75	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.441451786	2	0.5380154	CTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108405043	12A2p6	cell line	sgMsh2	108405043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	72	0	0	NA	exonic	Iho1	nonsynonymous SNV	"Iho1:NM_001135198:exon8:c.A1445G:p.Q482R,Iho1:NM_001379658:exon8:c.A1445G:p.Q482R"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.610518427	2	0.9371713	CTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108484042	12A2p6	cell line	sgMsh2	108484042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	99	0	0	NA	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon15:c.A1772G:p.N591S	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.535377698	2	0.9686629	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	96	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M6_p20	chr9	108563479	12A2p6	cell line	sgMsh2	108563479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	290	0	0	NA	exonic	Impdh2	nonsynonymous SNV	"Impdh2:NM_001378921:exon8:c.A878G:p.K293R,Impdh2:NM_011830:exon8:c.A878G:p.K293R"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.568251767	2	0.9999962	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	86	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	0.6976973	TAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	108968614	12A2p6	cell line	sgMsh2	108968614	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	138	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon56:c.G5063C:p.G1688A	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.9979923	GGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	108973691	12A2p6	cell line	sgMsh2	108973691	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	178	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon78:c.G6361A:p.D2121N	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.549466584	2	0.9987243	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	81	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.446148081	2	0.5632642	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.093	76	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.43675549	2	0.5028394	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	109082209	12A2p6	cell line	sgMsh2	109082209	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	35	0	0	NA	exonic	Tma7	synonymous SNV	Tma7:NM_183250:exon2:c.C34T:p.L12L	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9524188	AGG	synonymous	NA	NA	NA	NA
M6_p20	chr9	109688739	12A2p6	cell line	sgMsh2	109688739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	170	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon8:c.T1178A:p.V393E	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.723229521	2	0.7096513	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	109835328	12A2p6	cell line	sgMsh2	109835328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	210	0	0	NA	exonic	Nme6	nonsynonymous SNV	Nme6:NM_018757:exon3:c.A4G:p.T2A	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.497807333	2	0.9753041	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	110036791	12A2p6	cell line	sgMsh2	110036791	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	121	0	0	NA	exonic	Map4	synonymous SNV	"Map4:NM_001205330:exon8:c.T1848G:p.P616P,Map4:NM_001205332:exon8:c.T1848G:p.P616P,Map4:NM_008633:exon8:c.T1848G:p.P616P"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.868814685	1	0.9930269	CTT	synonymous	NA	NA	NA	NA
M6_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	229	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.981525779	1	2.97E-08	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	110373489	12A2p6	cell line	sgMsh2	110373489	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	94	0	0	NA	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon6:c.A731G:p.H244R,Scap:NM_001103162:exon6:c.A731G:p.H244R"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.469629559	2	0.7346707	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	110511451	12A2p6	cell line	sgMsh2	110511451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	178	0	0	NA	exonic	Kif9	nonsynonymous SNV	"Kif9:NM_001163569:exon15:c.T1511C:p.F504S,Kif9:NM_010628:exon15:c.T1511C:p.F504S"	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.854725798	1	0.9983861	TTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	104	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.342829578	3	0.9803446	ATA	synonymous	NA	NA	NA	NA
M6_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	58	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5362677	GGA	nonsynonymous	G	5	GGGGG	NA
M6_p20	chr9	111349370	12A2p6	cell line	sgMsh2	111349370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	129	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon7:c.T1125C:p.H375H	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.577644358	2	0.9969149	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	111366410	12A2p6	cell line	sgMsh2	111366410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	45	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon11:c.T3501C:p.H1167H	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.784281364	1	0.6785844	ATG	synonymous	NA	NA	NA	NA
M6_p20	chr9	111391303	12A2p6	cell line	sgMsh2	111391303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	33	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon20:c.C7107A:p.S2369S	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9445113	CCT	synonymous	NA	NA	NA	NA
M6_p20	chr9	113674457	12A2p6	cell line	sgMsh2	113674457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	230	0	0	NA	exonic	Pdcd6ip	synonymous SNV	"Pdcd6ip:NM_001164677:exon10:c.T1242C:p.S414S,Pdcd6ip:NM_001164678:exon10:c.T1227C:p.S409S,Pdcd6ip:NM_011052:exon10:c.T1227C:p.S409S"	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.742014704	1	0.5233685	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	98	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.605822132	2	0.9809422	ATC	nonsynonymous	A	5	AAAAA	NA
M6_p20	chr9	114723292	12A2p6	cell line	sgMsh2	114723292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	168	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon13:c.A1499C:p.D500A	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	1	1	0.9999989	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	115216918	12A2p6	cell line	sgMsh2	115216918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	134	0	0	NA	exonic	Osbpl10	nonsynonymous SNV	Osbpl10:NM_148958:exon8:c.A1621G:p.I541V	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.479022151	2	0.837675	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	118047582	12A2p6	cell line	sgMsh2	118047582	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.146	45	0	0	NA	exonic	Azi2	synonymous SNV	"Azi2:NM_001048146:exon2:c.A165G:p.S55S,Azi2:NM_001286508:exon2:c.A165G:p.S55S,Azi2:NM_013727:exon2:c.A165G:p.S55S"	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.685659157	2	0.007246588	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	118538955	12A2p6	cell line	sgMsh2	118538955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	98	0	0	NA	exonic	Golga4	nonsynonymous SNV	Golga4:NM_018748:exon11:c.A1225G:p.S409G	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.770192477	1	0.7317879	TAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	119072264	12A2p6	cell line	sgMsh2	119072264	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	185	0	0	NA	exonic	Plcd1	nonsynonymous SNV	"Plcd1:NM_001293648:exon13:c.T2099C:p.V700A,Plcd1:NM_019676:exon13:c.T2021C:p.V674A"	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.464933264	2	8.10E-08	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	259	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.408577717	3	0.9869491	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	75	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.657481383	2	0.863323	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	119359281	12A2p6	cell line	sgMsh2	119359281	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	342	0	0	NA	exonic	Xylb	nonsynonymous SNV	Xylb:NM_001033209:exon2:c.G152A:p.S51N	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.62930361	2	0.9999943	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	119361126	12A2p6	cell line	sgMsh2	119361126	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	111	0	0	NA	exonic	Xylb	synonymous SNV	Xylb:NM_001033209:exon3:c.T198C:p.G66G	9qF3	chr9-3190600-119502077	4	2	2	0.93	4.367554902	NA	1	0.413274012	3	0.7813236	GTG	synonymous	NA	NA	NA	NA
M6_p20	chr9	119638553	12A2p6	cell line	sgMsh2	119638553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	126	0	0	NA	exonic	Scn10a	synonymous SNV	"Scn10a:NM_001205321:exon16:c.C2520T:p.V840V,Scn10a:NM_009134:exon16:c.C2520T:p.V840V"	9qF3	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.99091837	1	0.9999547	CGA	synonymous	GAC	8	GACGACGA	NA
M6_p20	chr9	119956940	12A2p6	cell line	sgMsh2	119956940	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.081	158	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon15:c.A2003G:p.N668S	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.380399943	3	0.9829303	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	121208159	12A2p6	cell line	sgMsh2	121208159	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	140	0	0	NA	exonic	Ulk4	stopgain	Ulk4:NM_177589:exon18:c.C1762T:p.Q588X	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.338133283	3	0.9968057	TGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	121690387	12A2p6	cell line	sgMsh2	121690387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	35	0	0	NA	exonic	Sec22c	synonymous SNV	"Sec22c:NM_001164562:exon4:c.T375C:p.H125H,Sec22c:NM_178677:exon5:c.T375C:p.H125H"	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	1	1	0.9524188	AAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	121914809	12A2p6	cell line	sgMsh2	121914809	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	66	0	0	NA	exonic	Cyp8b1	nonsynonymous SNV	Cyp8b1:NM_010012:exon1:c.C1456T:p.P486S	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.817155433	1	0.8462673	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	118	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.422666603	3	0.726858	GAT	synonymous	NA	NA	NA	NA
M6_p20	chr9	123051339	12A2p6	cell line	sgMsh2	123051339	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	51	0	0	NA	exonic	Tgm4	synonymous SNV	Tgm4:NM_177911:exon8:c.A804G:p.A268A	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.878207276	1	0.9117927	CAG	synonymous	NA	NA	NA	NA
M6_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	97	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	0.756103591	1	0.6375563	CAC	synonymous	NA	NA	NA	NA
M6_p20	chr9	123582251	12A2p6	cell line	sgMsh2	123582251	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	143	0	0	NA	exonic	Sacm1l	frameshift deletion	Sacm1l:NM_030692:exon14:c.1104delT:p.L370fs*0	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M6_p20	chr9	124028825	12A2p6	cell line	sgMsh2	124028825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	145	0	0	NA	exonic	Ccr3	nonsynonymous SNV	Ccr3:NM_009914:exon2:c.T196C:p.Y66H	9qF4	chr9-119511849-124127055	4	3	1	0.93	4.367554902	NA	1	1	1	0.9999932	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	7166122	12A2p6	cell line	sgMsh2	7166122	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	52	0	0	NA	exonic	Clcn5	nonsynonymous SNV	"Clcn5:NM_016691:exon8:c.G805A:p.V269I,Clcn5:NM_001243762:exon10:c.G1015A:p.V339I"	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	7560721	12A2p6	cell line	sgMsh2	7560721	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	10	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon4:c.G1300A:p.D434N,Ppp1r3f:NM_138605:exon4:c.G1297A:p.D433N"	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TCG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	16	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M6_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	61	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	107	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	7676186	12A2p6	cell line	sgMsh2	7676186	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	54	0	0	NA	exonic	Magix	nonsynonymous SNV	Magix:NM_018832:exon4:c.G430A:p.G144R	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	8273656	12A2p6	cell line	sgMsh2	8273656	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	115	0	0	NA	exonic	Slc38a5	nonsynonymous SNV	Slc38a5:NM_172479:exon6:c.T419A:p.I140N	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATC	nonsynonymous	CAT	10	CATCATCATC	NA
M6_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	189	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	12604926	12A2p6	cell line	sgMsh2	12604926	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	141	0	0	NA	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon4:c.A363T:p.E121D	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	159	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	17215699	12A2p6	cell line	sgMsh2	17215699	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.119	33	0	0	NA	exonic	Efhc2	synonymous SNV	Efhc2:NM_028916:exon9:c.A1236G:p.T412T	XqA1.2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M6_p20	chrX	20517466	12A2p6	cell line	sgMsh2	20517466	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	100	0	0	NA	exonic	Jade3	nonsynonymous SNV	"Jade3:NM_199317:exon13:c.T2045G:p.V682G,Jade3:NM_001289684:exon14:c.T1733G:p.V578G"	XqA1.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	20644940	12A2p6	cell line	sgMsh2	20644940	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	80	0	0	NA	exonic	Rbm10	nonsynonymous SNV	"Rbm10:NM_001358905:exon7:c.A317T:p.Q106L,Rbm10:NM_001167776:exon8:c.A569T:p.Q190L,Rbm10:NM_001358904:exon8:c.A569T:p.Q190L,Rbm10:NM_001167775:exon9:c.A800T:p.Q267L,Rbm10:NM_001358903:exon9:c.A800T:p.Q267L,Rbm10:NM_145627:exon9:c.A800T:p.Q267L"	XqA1.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	24765050	12A2p6	cell line	sgMsh2	24765050	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	exonic	Gm5935	nonsynonymous SNV	Gm5935:NM_001081657:exon5:c.C213G:p.F71L	XqA2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	36044973	12A2p6	cell line	sgMsh2	36044973	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	78	0	0	NA	exonic	Dock11	synonymous SNV	Dock11:NM_001009947:exon42:c.T4689C:p.P1563P	XqA3.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M6_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;MuSe;Vardict	3	0.126	198	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	42715097	12A2p6	cell line	sgMsh2	42715097	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	40	0	0	NA	exonic	Tenm1	synonymous SNV	Tenm1:NM_011855:exon16:c.C2448T:p.C816C	XqA4	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CGC	synonymous	NA	NA	NA	NA
M6_p20	chrX	47811248	12A2p6	cell line	sgMsh2	47811248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	21	0	0	NA	exonic	Smarca1	synonymous SNV	"Smarca1:NM_001290708:exon23:c.T3027C:p.N1009N,Smarca1:NM_001358618:exon23:c.T3012C:p.N1004N,Smarca1:NM_001358619:exon23:c.T3027C:p.N1009N,Smarca1:NM_053123:exon23:c.T3027C:p.N1009N"	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M6_p20	chrX	48263593	12A2p6	cell line	sgMsh2	48263593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	62	0	0	NA	exonic	Utp14a	synonymous SNV	Utp14a:NM_028276:exon6:c.T498C:p.S166S	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6_p20	chrX	48263598	12A2p6	cell line	sgMsh2	48263598	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	61	0	0	NA	exonic	Utp14a	nonsynonymous SNV	Utp14a:NM_028276:exon6:c.T503A:p.F168Y	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	48378995	12A2p6	cell line	sgMsh2	48378995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	34	0	0	NA	exonic	Bcorl1	nonsynonymous SNV	Bcorl1:NM_178782:exon8:c.A3740T:p.Q1247L	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	48519719	12A2p6	cell line	sgMsh2	48519719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	120	0	0	NA	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon1:c.T119G:p.I40S	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	48872877	12A2p6	cell line	sgMsh2	48872877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	83	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A958G:p.T320A	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	48872904	12A2p6	cell line	sgMsh2	48872904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	76	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A931G:p.S311G	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	48875321	12A2p6	cell line	sgMsh2	48875321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	31	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon5:c.A500G:p.N167S	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M6_p20	chrX	52054518	12A2p6	cell line	sgMsh2	52054518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	27	0	0	NA	exonic	Gpc4	nonsynonymous SNV	Gpc4:NM_008150:exon7:c.T1220C:p.V407A	XqA5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	56661300	12A2p6	cell line	sgMsh2	56661300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	101	0	0	NA	exonic	Slc9a6	nonsynonymous SNV	"Slc9a6:NM_172780:exon16:c.T1961C:p.M654T,Slc9a6:NM_001358861:exon17:c.T1802C:p.M601T"	XqA6	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	57304585	12A2p6	cell line	sgMsh2	57304585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	97	0	0	NA	exonic	Arhgef6	synonymous SNV	Arhgef6:NM_152801:exon3:c.T387C:p.A129A	XqA6	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	66	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	95	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M6_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	135	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	73795591	12A2p6	cell line	sgMsh2	73795591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	16	0	0	NA	exonic	Pdzd4	synonymous SNV	"Pdzd4:NM_001290540:exon6:c.C765T:p.C255C,Pdzd4:NM_001029868:exon8:c.C1110T:p.C370C"	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGC	synonymous	NA	NA	NA	NA
M6_p20	chrX	74018000	12A2p6	cell line	sgMsh2	74018000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	51	0	0	NA	exonic	Irak1	synonymous SNV	Irak1:NM_001177973:exon12:c.T1560C:p.H520H	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAT	synonymous	NA	NA	NA	NA
M6_p20	chrX	74273681	12A2p6	cell line	sgMsh2	74273681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	0	0	NA	exonic	Dnase1l1	nonsynonymous SNV	"Dnase1l1:NM_001370787:exon7:c.T701G:p.I234S,Dnase1l1:NM_001172154:exon8:c.T779G:p.I260S,Dnase1l1:NM_027109:exon8:c.T779G:p.I260S"	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	108	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M6_p20	chrX	74411431	12A2p6	cell line	sgMsh2	74411431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	138	0	0	NA	exonic	G6pdx	nonsynonymous SNV	G6pdx:NM_008062:exon9:c.A878G:p.K293R	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	74640741	12A2p6	cell line	sgMsh2	74640741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	71	0	0	NA	exonic	Gm5640	synonymous SNV	Gm5640:NM_001099302:exon4:c.A738G:p.K246K	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M6_p20	chrX	75287087	12A2p6	cell line	sgMsh2	75287087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	108	0	0	NA	exonic	F8	nonsynonymous SNV	"F8:NM_001161373:exon13:c.A3196G:p.N1066D,F8:NM_001161374:exon13:c.A3196G:p.N1066D,F8:NM_007977:exon14:c.A3406G:p.N1136D"	XqA7.3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	84474168	12A2p6	cell line	sgMsh2	84474168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	37	0	0	NA	exonic	Dmd	synonymous SNV	Dmd:NM_007868:exon51:c.T7323A:p.S2441S	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M6_p20	chrX	85776446	12A2p6	cell line	sgMsh2	85776446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	38	0	0	NA	exonic	Gk	nonsynonymous SNV	"Gk:NM_001294138:exon1:c.A58G:p.T20A,Gk:NM_001294140:exon1:c.A58G:p.T20A,Gk:NM_001331046:exon1:c.A58G:p.T20A,Gk:NM_008194:exon1:c.A58G:p.T20A,Gk:NM_212444:exon1:c.A58G:p.T20A"	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	75	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	89404332	12A2p6	cell line	sgMsh2	89404332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	47	0	0	NA	exonic	Dcaf8l	synonymous SNV	Dcaf8l:NM_008821:exon12:c.T2190C:p.G730G	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6_p20	chrX	89753239	12A2p6	cell line	sgMsh2	89753239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	164	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.T676C:p.Y226H	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	89754344	12A2p6	cell line	sgMsh2	89754344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	38	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.C1781T:p.A594V	XqC1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	75	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M6_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	136	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	94197377	12A2p6	cell line	sgMsh2	94197377	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	98	0	0	NA	exonic	Eif2s3x	nonsynonymous SNV	Eif2s3x:NM_012010:exon10:c.C1093T:p.P365S	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	94536944	12A2p6	cell line	sgMsh2	94536944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	152	0	0	NA	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon11:c.A1880G:p.Y627C	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	94538842	12A2p6	cell line	sgMsh2	94538842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	48	0	0	NA	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon4:c.A1178G:p.Q393R	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	95926565	12A2p6	cell line	sgMsh2	95926565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	46	0	0	NA	exonic	Zc3h12b	nonsynonymous SNV	Zc3h12b:NM_001034907:exon9:c.A1103G:p.Y368C	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	97076114	12A2p6	cell line	sgMsh2	97076114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	63	0	0	NA	exonic	Pgr15l	nonsynonymous SNV	Pgr15l:NM_001033361:exon2:c.A101T:p.D34V	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	97076625	12A2p6	cell line	sgMsh2	97076625	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	106	0	0	NA	exonic	Pgr15l	stopgain	Pgr15l:NM_001033361:exon3:c.C409T:p.Q137X	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	98150436	12A2p6	cell line	sgMsh2	98150436	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	40	0	0	NA	exonic	Ar	nonsynonymous SNV	Ar:NM_013476:exon1:c.C655A:p.L219I	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCT	nonsynonymous	G	5	GGGGG	NA
M6_p20	chrX	100506021	12A2p6	cell line	sgMsh2	100506021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	127	0	0	NA	exonic	Igbp1	synonymous SNV	Igbp1:NM_008784:exon5:c.A843G:p.L281L	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M6_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	13	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.114	74	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	101411907	12A2p6	cell line	sgMsh2	101411907	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	198	0	0	NA	exonic	Zmym3	nonsynonymous SNV	"Zmym3:NM_001177985:exon16:c.G2626C:p.V876L,Zmym3:NM_019831:exon16:c.G2626C:p.V876L"	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Vardict	2	0.214	62	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chrX	102069453	12A2p6	cell line	sgMsh2	102069453	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	60	0	0	NA	exonic	Rtl5	synonymous SNV	Rtl5:NM_001278534:exon1:c.G1410A:p.E470E	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M6_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.12	50	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M6_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	107	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M6_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	42	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	106187306	12A2p6	cell line	sgMsh2	106187306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	81	0	0	NA	exonic	Pgk1	nonsynonymous SNV	Pgk1:NM_008828:exon1:c.T56C:p.V19A	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	106930585	12A2p6	cell line	sgMsh2	106930585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	147	0	0	NA	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.G374A:p.S125N	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	107946286	12A2p6	cell line	sgMsh2	107946286	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	187	0	0	NA	exonic	Gm732	synonymous SNV	Gm732:NM_001033252:exon2:c.T1020A:p.S340S	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M6_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	144	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	112119806	12A2p6	cell line	sgMsh2	112119806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	123	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A1968T:p.K656N	XqE1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	112627170	12A2p6	cell line	sgMsh2	112627170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	43	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_177747:exon6:c.G917A:p.S306N,Zfp711:NM_001381898:exon7:c.G917A:p.S306N"	XqE1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	112632850	12A2p6	cell line	sgMsh2	112632850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	118	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_001381900:exon8:c.A1577G:p.H526R,Zfp711:NM_001381899:exon9:c.A1577G:p.H526R,Zfp711:NM_177747:exon9:c.A1712G:p.H571R,Zfp711:NM_001381898:exon10:c.A1712G:p.H571R"	XqE1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	112656104	12A2p6	cell line	sgMsh2	112656104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	237	0	0	NA	exonic	Pof1b	synonymous SNV	Pof1b:NM_181579:exon9:c.T936C:p.I312I	XqE1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
M6_p20	chrX	130289939	12A2p6	cell line	sgMsh2	130289939	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	74	0	0	NA	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon25:c.A3098T:p.E1033V	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	63	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M6_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	62	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	57	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	144	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	135613266	12A2p6	cell line	sgMsh2	135613266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	151	0	0	NA	exonic	Prame	nonsynonymous SNV	Prame:NM_029459:exon10:c.G1273A:p.E425K	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	135842828	12A2p6	cell line	sgMsh2	135842828	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	0	0	NA	exonic	Gprasp2	nonsynonymous SNV	"Gprasp2:NM_001359371:exon6:c.G935T:p.R312M,Gprasp2:NM_001163015:exon7:c.G935T:p.R312M,Gprasp2:NM_001163016:exon7:c.G935T:p.R312M,Gprasp2:NM_001163017:exon7:c.G935T:p.R312M"	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	136076062	12A2p6	cell line	sgMsh2	136076062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	225	0	0	NA	exonic	Nxf3	nonsynonymous SNV	Nxf3:NM_001024141:exon12:c.A1028G:p.H343R	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	136214247	12A2p6	cell line	sgMsh2	136214247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	167	0	0	NA	exonic	Bex1	nonsynonymous SNV	Bex1:NM_009052:exon3:c.T332C:p.V111A	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	CCGC	8	CCGCCCGC	NA
M6_p20	chrX	136832106	12A2p6	cell line	sgMsh2	136832106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	36	0	0	NA	exonic	Plp1	synonymous SNV	"Plp1:NM_001290561:exon3:c.A345T:p.A115A,Plp1:NM_011123:exon3:c.A345T:p.A115A,Plp1:NM_001359117:exon4:c.A345T:p.A115A,Plp1:NM_001359118:exon4:c.A345T:p.A115A,Plp1:NM_001359120:exon4:c.A345T:p.A115A,Plp1:NM_001359119:exon5:c.A345T:p.A115A"	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M6_p20	chrX	136861391	12A2p6	cell line	sgMsh2	136861391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	64	0	0	NA	exonic	Rab9b	nonsynonymous SNV	Rab9b:NM_176971:exon3:c.T259C:p.F87L	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	139736407	12A2p6	cell line	sgMsh2	139736407	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	74	0	0	NA	exonic	Tbc1d8b	stopgain	Tbc1d8b:NM_001081499:exon13:c.G2239T:p.E747X	XqF1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	141722961	12A2p6	cell line	sgMsh2	141722961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	59	0	0	NA	exonic	Irs4	synonymous SNV	Irs4:NM_010572:exon1:c.T2238C:p.N746N	XqF2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	synonymous	TCACTG	15	TCACTGTCACTGTCA	NA
M6_p20	chrX	143733094	12A2p6	cell line	sgMsh2	143733094	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	25	0	0	NA	exonic	Pak3	nonsynonymous SNV	"Pak3:NM_001195047:exon6:c.C554A:p.P185H,Pak3:NM_008778:exon6:c.C491A:p.P164H,Pak3:NM_001195046:exon7:c.C599A:p.P200H,Pak3:NM_001195048:exon7:c.C536A:p.P179H,Pak3:NM_001195049:exon9:c.C491A:p.P164H"	XqF2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	46	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M6_p20	chrX	148703240	12A2p6	cell line	sgMsh2	148703240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	82	0	0	NA	exonic	Gm15127	synonymous SNV	Gm15127:NM_001114400:exon7:c.A1341G:p.T447T	XqF2	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M6_p20	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.444	11	0	0	NA	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M6_p20	chrX	151088678	12A2p6	cell line	sgMsh2	151088678	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	23	0	0	NA	exonic	Fgd1	synonymous SNV	Fgd1:NM_008001:exon18:c.A2653C:p.R885R	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M6_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	59	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	152004181	12A2p6	cell line	sgMsh2	152004181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	72	0	0	NA	exonic	Hsd17b10	nonsynonymous SNV	Hsd17b10:NM_016763:exon6:c.T638C:p.V213A	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	153392828	12A2p6	cell line	sgMsh2	153392828	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	37	0	0	NA	exonic	Klf8	nonsynonymous SNV	"Klf8:NM_173780:exon7:c.A1028T:p.D343V,Klf8:NM_001357183:exon8:c.A1028T:p.D343V"	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	155054380	12A2p6	cell line	sgMsh2	155054380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	336	0	0	NA	exonic	Magea5	synonymous SNV	Magea5:NM_020018:exon3:c.T15C:p.H5H	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M6_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	276	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	155574712	12A2p6	cell line	sgMsh2	155574712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	123	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon3:c.A1496G:p.Y499C	XqF3	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	160635155	12A2p6	cell line	sgMsh2	160635155	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	35	0	0	NA	exonic	Ppef1	frameshift deletion	Ppef1:NM_011147:exon11:c.1107delA:p.G370Afs*27	XqF4	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M6_p20	chrX	163939348	12A2p6	cell line	sgMsh2	163939348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	151	0	0	NA	exonic	Zrsr2	nonsynonymous SNV	Zrsr2:NM_009453:exon10:c.T907C:p.C303R	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	166427251	12A2p6	cell line	sgMsh2	166427251	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	50	0	0	NA	exonic	Ofd1	frameshift deletion	Ofd1:NM_177429:exon7:c.577delT:p.S193Pfs*2	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M6_p20	chrX	166568517	12A2p6	cell line	sgMsh2	166568517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	101	0	0	NA	exonic	Egfl6	nonsynonymous SNV	Egfl6:NM_019397:exon2:c.T73C:p.W25R	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	167306156	12A2p6	cell line	sgMsh2	167306156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	185	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.T2333C:p.M778T,Tlr7:NM_133211:exon3:c.T2333C:p.M778T,Tlr7:NM_001290756:exon4:c.T2333C:p.M778T,Tlr7:NM_001290758:exon4:c.T2342C:p.M781T,Tlr7:NM_001290755:exon5:c.T2333C:p.M778T"	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrX	169253600	12A2p6	cell line	sgMsh2	169253600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	101	0	0	NA	exonic	Arhgap6	synonymous SNV	"Arhgap6:NM_001287530:exon6:c.C726T:p.F242F,Arhgap6:NM_009707:exon6:c.C1302T:p.F434F,Arhgap6:NM_178754:exon6:c.C756T:p.F252F"	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M6_p20	chrX	169986005	12A2p6	cell line	sgMsh2	169986005	G	A	SNV	Mutect2;Vardict	2	0.058	145	0	0	NA	exonic	Mid1	nonsynonymous SNV	"Mid1:NM_001290504:exon8:c.G1355A:p.G452D,Mid1:NM_001290505:exon8:c.G1355A:p.G452D,Mid1:NM_001290506:exon8:c.G1241A:p.G414D,Mid1:NM_001290512:exon8:c.G737A:p.G246D,Mid1:NM_010797:exon8:c.G1394A:p.G465D"	XqF5	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	139	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M6_p20	chrY	1197294	12A2p6	cell line	sgMsh2	1197294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	102	0	0	NA	exonic	Uty	nonsynonymous SNV	"Uty:NM_001326682:exon6:c.T458C:p.V153A,Uty:NM_001326683:exon6:c.T272C:p.V91A,Uty:NM_009484:exon6:c.T461C:p.V154A"	YqA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M6_p20	chrY	1340110	12A2p6	cell line	sgMsh2	1340110	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	34	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon31:c.A4268C:p.N1423T	YqA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M6_p20	chrY	1367117	12A2p6	cell line	sgMsh2	1367117	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	189	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon22:c.A2969G:p.H990R	YqA1	NA	NA	NA	NA	0.93	4.367554902	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr1	4346640	12A2p6	cell line	sgMsh2	4346640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	189	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G4248T:p.E1416D	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.961809534	1	0.9999626	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	4347145	12A2p6	cell line	sgMsh2	4347145	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	177	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C3743A:p.P1248H	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999913	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	4349292	12A2p6	cell line	sgMsh2	4349292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	239	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G1596T:p.Q532H	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	4349478	12A2p6	cell line	sgMsh2	4349478	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	228	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.G1410A:p.E470E	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.825059363	1	0.9397364	CCT	synonymous	NA	NA	NA	NA
M7	chr1	4352795	12A2p6	cell line	sgMsh2	4352795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	101	0	0	NA	exonic	Rp1	nonsynonymous SNV	"Rp1:NM_001195662:exon2:c.A61G:p.M21V,Rp1:NM_001370921:exon2:c.A31G:p.M11V,Rp1:NM_011283:exon2:c.A31G:p.M11V"	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9993492	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr1	4830313	12A2p6	cell line	sgMsh2	4830313	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	168	176	1	0.005681818	exonic	Lypla1	synonymous SNV	"Lypla1:NM_001355712:exon4:c.T213C:p.S71S,Lypla1:NM_008866:exon4:c.T213C:p.S71S"	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.246150307	3	2.33E-08	CTT	synonymous	NA	NA	NA	NA
M7	chr1	5916369	12A2p6	cell line	sgMsh2	5916369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	57	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.T925C:p.Y309H	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.925342822	1	0.9729384	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	6802738	12A2p6	cell line	sgMsh2	6802738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	138	0	0	NA	exonic	St18	synonymous SNV	"St18:NM_173868:exon6:c.A696G:p.E232E,St18:NM_001244693:exon7:c.A696G:p.E232E,St18:NM_001244692:exon8:c.A696G:p.E232E"	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999202	AAG	synonymous	NA	NA	NA	NA
M7	chr1	6855401	12A2p6	cell line	sgMsh2	6855401	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.541	197	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon20:c.G2782A:p.D928N,St18:NM_001244693:exon21:c.G2782A:p.D928N,St18:NM_001244692:exon22:c.G2782A:p.D928N"	1qA1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999972	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	143	6	1	0.166666667	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999399	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	9687678	12A2p6	cell line	sgMsh2	9687678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	146	8	3	0.375	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.A395G:p.H132R,Mybl1:NM_008651:exon5:c.A395G:p.H132R"	1qA2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999493	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	10163719	12A2p6	cell line	sgMsh2	10163719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	165	168	31	0.18452381	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon22:c.A3349C:p.S1117R	1qA2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.966367873	1	0.999911	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	12848408	12A2p6	cell line	sgMsh2	12848408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	104	2	2	1	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.C2502T:p.C834C,Sulf1:NM_001198565:exon20:c.C2502T:p.C834C,Sulf1:NM_172294:exon20:c.C2502T:p.C834C"	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999451	GCC	synonymous	NA	NA	NA	NA
M7	chr1	12921116	12A2p6	cell line	sgMsh2	12921116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	97	0	0	NA	exonic	Slco5a1	nonsynonymous SNV	Slco5a1:NM_172841:exon4:c.A1348G:p.T450A	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.469508919	2	0.9995405	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	15710517	12A2p6	cell line	sgMsh2	15710517	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	139	0	0	NA	exonic	Kcnb2	stopgain	Kcnb2:NM_001098528:exon3:c.C1612T:p.Q538X	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.961809534	1	0.9996377	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr1	15815963	12A2p6	cell line	sgMsh2	15815963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	140	43	7	0.162790698	exonic	Terf1	synonymous SNV	Terf1:NM_009352:exon4:c.A576G:p.E192E	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999287	AAT	synonymous	NA	NA	NA	NA
M7	chr1	16369825	12A2p6	cell line	sgMsh2	16369825	T	-	Deletion	Strelka2;Vardict	2	0.192	125	39	6	0.153846154	exonic	Stau2	frameshift deletion	"Stau2:NM_001111272:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_001347045:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_025303:exon10:c.1091delA:p.N364Mfs*66,Stau2:NM_001347044:exon12:c.1091delA:p.N364Mfs*66"	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.875201093	NA	NA	ATT	frameshift	"CAG, T"	"8, 8"	"CAGCAGCA, TTTTTTTT"	-1
M7	chr1	19118939	12A2p6	cell line	sgMsh2	19118939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	46	0	0	NA	exonic	Tfap2d	synonymous SNV	"Tfap2d:NM_001379073:exon3:c.G720A:p.R240R,Tfap2d:NM_001379074:exon4:c.G636A:p.R212R,Tfap2d:NM_153154:exon4:c.G708A:p.R236R"	1qA3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9854647	GGC	synonymous	NA	NA	NA	NA
M7	chr1	20350413	12A2p6	cell line	sgMsh2	20350413	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	52	5	1	0.2	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon47:c.G7468A:p.G2490S	1qA4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.897992788	1	0.9520465	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr1	21001577	12A2p6	cell line	sgMsh2	21001577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	94	8	1	0.125	exonic	Tram2	synonymous SNV	Tram2:NM_177409:exon11:c.A1098G:p.K366K	1qA4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.9344595	1	0.9940466	GTT	synonymous	NA	NA	NA	NA
M7	chr1	21079059	12A2p6	cell line	sgMsh2	21079059	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.146	36	9	0	0	exonic	Tram2	nonsynonymous SNV	Tram2:NM_177409:exon1:c.A55G:p.I19V	1qA4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.665517497	1	0.5221026	ATG	nonsynonymous	GAT	8	GATGATGA	NA
M7	chr1	24322942	12A2p6	cell line	sgMsh2	24322942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	38	0	0	NA	exonic	Col19a1	synonymous SNV	Col19a1:NM_007733:exon25:c.A1749G:p.K583K	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9773057	GTT	synonymous	NA	NA	NA	NA
M7	chr1	25547416	12A2p6	cell line	sgMsh2	25547416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	33	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon5:c.G1195A:p.V399I	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9700852	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	26682439	12A2p6	cell line	sgMsh2	26682439	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	227	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.G3659A:p.S1220N	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999995	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	26682823	12A2p6	cell line	sgMsh2	26682823	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.037	139	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A3275G:p.N1092S	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.168658544	3	1.05E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	26683452	12A2p6	cell line	sgMsh2	26683452	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.296	142	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2646C:p.T882T	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999364	CTG	synonymous	CTGTA	10	CTGTACTGTA	NA
M7	chr1	26683454	12A2p6	cell line	sgMsh2	26683454	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.296	142	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2644T:p.T882S	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999364	GTA	nonsynonymous	CTGTA	10	CTGTACTGTA	NA
M7	chr1	26687339	12A2p6	cell line	sgMsh2	26687339	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	399	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G88A:p.A30T	1qA5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.127633493	3	1	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr1	32546523	12A2p6	cell line	sgMsh2	32546523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	199	0	0	NA	exonic	Gm5415	nonsynonymous SNV	Gm5415:NM_001164286:exon1:c.G305A:p.R102K	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999975	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	33776997	12A2p6	cell line	sgMsh2	33776997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	98	29	7	0.24137931	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001290699:exon8:c.T1388C:p.M463T,Zfp451:NM_001359274:exon10:c.T1871C:p.M624T,Zfp451:NM_001359275:exon10:c.T1871C:p.M624T,Zfp451:NM_133817:exon10:c.T1871C:p.M624T"	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9992286	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	33883519	12A2p6	cell line	sgMsh2	33883519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	8	8	1	exonic	Bend6	synonymous SNV	Bend6:NM_177235:exon2:c.A42G:p.Q14Q	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9993851	CTT	synonymous	NA	NA	NA	NA
M7	chr1	36506420	12A2p6	cell line	sgMsh2	36506420	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	39	27	5	0.185185185	exonic	Cnnm4	nonsynonymous SNV	Cnnm4:NM_033570:exon7:c.G2130C:p.Q710H	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9785304	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	36552734	12A2p6	cell line	sgMsh2	36552734	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	40	34	8	0.235294118	exonic	Sema4c	nonsynonymous SNV	"Sema4c:NM_001126047:exon9:c.T947G:p.V316G,Sema4c:NM_001304329:exon9:c.T947G:p.V316G,Sema4c:NM_001304330:exon10:c.T947G:p.V316G"	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9796905	AAC	nonsynonymous	A	5	AAAAA	NA
M7	chr1	37431486	12A2p6	cell line	sgMsh2	37431486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	155	140	28	0.2	exonic	Unc50	nonsynonymous SNV	"Unc50:NM_001356528:exon2:c.T190C:p.Y64H,Unc50:NM_026123:exon2:c.T190C:p.Y64H"	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999696	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	40111977	12A2p6	cell line	sgMsh2	40111977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	79	0	0	NA	exonic	Il1r2	nonsynonymous SNV	"Il1r2:NM_001360801:exon3:c.A1G:p.M1V,Il1r2:NM_001360800:exon4:c.A445G:p.M149V,Il1r2:NM_010555:exon4:c.A391G:p.M131V"	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9977367	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	40524327	12A2p6	cell line	sgMsh2	40524327	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	116	5	0	0	exonic	Il18rap	synonymous SNV	Il18rap:NM_010553:exon4:c.C15G:p.G5G	1qB	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.866084414	1	0.9732506	GCT	synonymous	NA	NA	NA	NA
M7	chr1	43999752	12A2p6	cell line	sgMsh2	43999754	GAA	-	Deletion	Strelka2;Vardict	2	0.1654	133	214	30	0.140186916	exonic	Tpp2	nonframeshift deletion	"Tpp2:NM_001310540:exon27:c.3457_3459del:p.E1155del,Tpp2:NM_009418:exon28:c.3496_3498del:p.E1168del"	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.753949274	NA	NA	GGA	inframe	GAA	10	GAAGAAGAAG	-3
M7	chr1	45380206	12A2p6	cell line	sgMsh2	45380206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	94	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon51:c.A3713G:p.Y1238C	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9990323	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr1	45817269	12A2p6	cell line	sgMsh2	45817269	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	89	58	0	0	exonic	Wdr75	frameshift deletion	Wdr75:NM_028599:exon14:c.1451delC:p.I485Lfs*34	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr1	46234215	12A2p6	cell line	sgMsh2	46234215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	131	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.T7370C:p.L2457P	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998813	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	46836054	12A2p6	cell line	sgMsh2	46836054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	169	223	69	0.30941704	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon2:c.T87C:p.H29H,Slc39a10:NM_001356416:exon3:c.T87C:p.H29H,Slc39a10:NM_001356417:exon3:c.T87C:p.H29H"	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.916226144	1	0.9990961	CAT	synonymous	CATGGT	13	CATGGTCATGGTC	NA
M7	chr1	53299033	12A2p6	cell line	sgMsh2	53299033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	139	60	14	0.233333333	exonic	Ormdl1	nonsynonymous SNV	Ormdl1:NM_145517:exon2:c.A55G:p.S19G	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999246	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	53559155	12A2p6	cell line	sgMsh2	53559155	C	T	SNV	Mutect2;Vardict	2	0.021	373	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon28:c.G4220A:p.G1407D	1qC1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.095725119	3	1	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr1	54651725	12A2p6	cell line	sgMsh2	54651725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	229	13	5	0.384615385	exonic	Ankrd44	nonsynonymous SNV	Ankrd44:NM_001081433:exon27:c.T2867C:p.V956A	1qC1.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.834176041	1	0.9667287	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	55078678	12A2p6	cell line	sgMsh2	55078678	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.184	82	228	86	0.377192982	exonic	Hspd1	nonsynonymous SNV	"Hspd1:NM_001356512:exon11:c.A1420T:p.I474F,Hspd1:NM_010477:exon11:c.A1420T:p.I474F"	1qC1.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.83873438	1	0.9128142	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr1	55079198	12A2p6	cell line	sgMsh2	55079198	C	-	Deletion	Strelka2;Vardict	2	0.2353	136	1066	6	0.005628518	exonic	Hspd1	frameshift deletion	"Hspd1:NM_001356512:exon10:c.1248delG:p.D419Tfs*18,Hspd1:NM_010477:exon10:c.1248delG:p.D419Tfs*18"	1qC1.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	TCT	frameshift	T	6	TTTTTT	-1
M7	chr1	56636702	12A2p6	cell line	sgMsh2	56636702	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	136	0	0	NA	exonic	Hsfy2	nonsynonymous SNV	Hsfy2:NM_027661:exon1:c.C675A:p.D225E	1qC1.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.815942685	1	0.8721667	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr1	56891178	12A2p6	cell line	sgMsh2	56891178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	133	8	1	0.125	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.T685C:p.Y229H,Satb2:NM_001358580:exon7:c.T685C:p.Y229H,Satb2:NM_001358581:exon7:c.T685C:p.Y229H"	1qC1.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999894	TAC	nonsynonymous	T	5	TTTTT	NA
M7	chr1	58404268	12A2p6	cell line	sgMsh2	58404268	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.185	134	900	183	0.203333333	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1142G:p.Y381C	1qC1.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.843292719	1	0.9525461	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	58404270	12A2p6	cell line	sgMsh2	58404270	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.185	134	913	187	0.204819277	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1144G:p.K382E	1qC1.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.843292719	1	0.9525461	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	58997406	12A2p6	cell line	sgMsh2	58997406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	230	0	0	NA	exonic	C2cd6	nonsynonymous SNV	C2cd6:NM_026600:exon19:c.A6706T:p.M2236L	1qC1.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.993717907	1	0.9999993	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr1	59867606	12A2p6	cell line	sgMsh2	59867606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	216	99	28	0.282828283	exonic	Bmpr2	synonymous SNV	Bmpr2:NM_007561:exon12:c.C1857T:p.G619G	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.98004289	1	0.9999966	GCC	synonymous	NA	NA	NA	NA
M7	chr1	60200873	12A2p6	cell line	sgMsh2	60200873	A	-	Deletion	Strelka2;Vardict	2	0.2444	90	35	0	0	exonic	Nbeal1	frameshift deletion	Nbeal1:NM_173444:exon6:c.397delA:p.K135Rfs*14	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7	chr1	62344084	12A2p6	cell line	sgMsh2	62344084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	41	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon17:c.A2336C:p.E779A	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.861526075	1	0.09500251	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	63748090	12A2p6	cell line	sgMsh2	63748090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	84	110	24	0.218181818	exonic	Fastkd2	nonsynonymous SNV	Fastkd2:NM_172422:exon9:c.T1682C:p.L561P	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.966367873	1	0.9960767	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	65245796	12A2p6	cell line	sgMsh2	65245796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	148	28	6	0.214285714	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon19:c.T2418C:p.T806T,Pikfyve:NM_011086:exon19:c.T2283C:p.T761T"	1qC2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999547	CTT	synonymous	NA	NA	NA	NA
M7	chr1	66415713	12A2p6	cell line	sgMsh2	66415713	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	89	0	0	NA	exonic	Map2	nonsynonymous SNV	Map2:NM_001310634:exon7:c.T3761G:p.L1254R	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9987153	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	68042589	12A2p6	cell line	sgMsh2	68042589	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	170	0	0	NA	exonic	Erbb4	synonymous SNV	Erbb4:NM_010154:exon26:c.A3285G:p.L1095L	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.200566917	3	1.02E-09	GTA	synonymous	NA	NA	NA	NA
M7	chr1	68560567	12A2p6	cell line	sgMsh2	68560567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	157	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon3:c.T350C:p.L117S	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999728	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	71559269	12A2p6	cell line	sgMsh2	71559269	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	106	120	29	0.241666667	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon3:c.C190T:p.R64C	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.943576178	1	0.9971335	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr1	71613819	12A2p6	cell line	sgMsh2	71613819	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	111	190	44	0.231578947	exonic	Fn1	nonsynonymous SNV	Fn1:NM_010233:exon25:c.T4010G:p.V1337G	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.993717907	1	0.9995464	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	71645599	12A2p6	cell line	sgMsh2	71645599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	84	1134	244	0.215167549	exonic	Fn1	synonymous SNV	"Fn1:NM_001276408:exon6:c.T792C:p.N264N,Fn1:NM_001276409:exon6:c.T792C:p.N264N,Fn1:NM_001276410:exon6:c.T792C:p.N264N,Fn1:NM_001276411:exon6:c.T792C:p.N264N,Fn1:NM_001276412:exon6:c.T792C:p.N264N,Fn1:NM_001276413:exon6:c.T792C:p.N264N,Fn1:NM_010233:exon6:c.T792C:p.N264N"	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9982947	CAT	synonymous	NA	NA	NA	NA
M7	chr1	74426621	12A2p6	cell line	sgMsh2	74426621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	30	11	0.366666667	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon14:c.A1570G:p.N524D	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9973179	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	74490187	12A2p6	cell line	sgMsh2	74490187	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.286	58	34	10	0.294117647	exonic	Usp37	nonsynonymous SNV	"Usp37:NM_001310662:exon5:c.T332G:p.M111R,Usp37:NM_176972:exon6:c.T332G:p.M111R"	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9925886	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	74490189	12A2p6	cell line	sgMsh2	74490189	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.286	58	35	9	0.257142857	exonic	Usp37	synonymous SNV	"Usp37:NM_001310662:exon5:c.T330C:p.A110A,Usp37:NM_176972:exon6:c.T330C:p.A110A"	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9925886	TAG	synonymous	NA	NA	NA	NA
M7	chr1	74575816	12A2p6	cell line	sgMsh2	74575816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	181	14	4	0.285714286	exonic	Zfp142	nonsynonymous SNV	"Zfp142:NM_001310668:exon5:c.A1837G:p.K613E,Zfp142:NM_029888:exon5:c.A1528G:p.K510E"	1qC3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999993	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	75429573	12A2p6	cell line	sgMsh2	75429573	A	G	SNV	Mutect2;Vardict	2	0.1	44	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon36:c.A7118G:p.Q2373R,Speg:NM_007463:exon38:c.A9323G:p.Q3108R"	1qC4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.455833902	2	0.9336152	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	75556905	12A2p6	cell line	sgMsh2	75556905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	51	6	1	0.166666667	exonic	Slc4a3	nonsynonymous SNV	"Slc4a3:NM_001357149:exon20:c.T3170C:p.V1057A,Slc4a3:NM_001357150:exon20:c.T3170C:p.V1057A,Slc4a3:NM_009208:exon20:c.T3170C:p.V1057A"	1qC4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.79315099	1	0.799103	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	78462901	12A2p6	cell line	sgMsh2	78462901	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	190	187	18	0.096256684	exonic	Farsb	synonymous SNV	"Farsb:NM_001278075:exon12:c.A1104G:p.A368A,Farsb:NM_011811:exon12:c.A1104G:p.A368A"	1qC4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.670075836	2	0.9978726	CTG	synonymous	NA	NA	NA	NA
M7	chr1	82715280	12A2p6	cell line	sgMsh2	82715280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	91	1	0	0	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon48:c.A4285G:p.N1429D	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.929901161	1	0.9924835	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	84038321	12A2p6	cell line	sgMsh2	84038321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	125	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon3:c.A364G:p.T122A	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.820501024	1	0.8872947	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	84395636	12A2p6	cell line	sgMsh2	84395636	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	149	0	0	NA	exonic	Dner	nonsynonymous SNV	Dner:NM_152915:exon11:c.G1834A:p.V612M	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999572	ACC	nonsynonymous	CCCA	8	CCCACCCA	NA
M7	chr1	84896506	12A2p6	cell line	sgMsh2	84896506	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.085	92	34	2	0.058823529	exonic	Fbxo36	synonymous SNV	Fbxo36:NM_025386:exon3:c.A222G:p.V74V	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.387458817	2	0.8665029	TAT	synonymous	NA	NA	NA	NA
M7	chr1	85644590	12A2p6	cell line	sgMsh2	85644590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	126	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon17:c.A1513G:p.K505E	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.60625909	2	0.9973096	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	85941647	12A2p6	cell line	sgMsh2	85941647	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	85	0	0	NA	exonic	Gpr55	nonsynonymous SNV	Gpr55:NM_001033290:exon2:c.C211G:p.L71V	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9983886	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr1	87264656	12A2p6	cell line	sgMsh2	87264656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	28	0	0	NA	exonic	Efhd1	synonymous SNV	Efhd1:NM_028889:exon1:c.T207C:p.G69G	1qC5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.96066	GTA	synonymous	NA	NA	NA	NA
M7	chr1	87949990	12A2p6	cell line	sgMsh2	87949990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	337	43	11	0.255813953	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon26:c.A3176G:p.Q1059R,Usp40:NM_001198573:exon30:c.A3443G:p.Q1148R"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	2.00E-09	TTG	nonsynonymous	T	5	TTTTT	NA
M7	chr1	88088110	12A2p6	cell line	sgMsh2	88088110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	149	0	0	NA	exonic	Ugt1a8	nonsynonymous SNV	Ugt1a8:NM_001378375:exon1:c.A244G:p.T82A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.825059363	1	0.9130841	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	88212059	12A2p6	cell line	sgMsh2	88212059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.026	511	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.T58C:p.C20R	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.118516815	3	1	GTG	nonsynonymous	TG	9	TGTGTGTGT	NA
M7	chr1	88212249	12A2p6	cell line	sgMsh2	88212249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.039	805	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.T248C:p.V83A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.177775222	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	88247214	12A2p6	cell line	sgMsh2	88247214	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	718	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon25:c.A2715G:p.Q905Q	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.113958476	3	1	AAC	synonymous	C	5	CCCCC	NA
M7	chr1	88255099	12A2p6	cell line	sgMsh2	88255099	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	295	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.A3667G:p.T1223A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.154983527	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	88255223	12A2p6	cell line	sgMsh2	88255223	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	215	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3791G:p.V1264G	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.23247529	3	1.01E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	88256404	12A2p6	cell line	sgMsh2	88256404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	330	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon36:c.T4109C:p.M1370T	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.209683595	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr1	88257768	12A2p6	cell line	sgMsh2	88257768	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	296	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon38:c.T4496C:p.V1499A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.173216883	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	88266615	12A2p6	cell line	sgMsh2	88266615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	338	104	4	0.038461538	exonic	A730008H23Rik;Hjurp	synonymous SNV	"A730008H23Rik:NM_172505:exon5:c.A342G:p.E114E,Hjurp:NM_198652:exon8:c.A570G:p.E190E"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.282617019	3	1.01E-09	CTT	synonymous	NA	NA	NA	NA
M7	chr1	88272738	12A2p6	cell line	sgMsh2	88272738	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	530	134	11	0.082089552	exonic	Hjurp	nonsynonymous SNV	Hjurp:NM_198652:exon4:c.C247T:p.P83S	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.205125256	3	1	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr1	89145723	12A2p6	cell line	sgMsh2	89145723	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	89	82	16	0.195121951	exonic	Sh3bp4	synonymous SNV	Sh3bp4:NM_133816:exon4:c.C2292T:p.N764N	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.660959158	2	0.09390528	ACA	synonymous	NA	NA	NA	NA
M7	chr1	89152266	12A2p6	cell line	sgMsh2	89152266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	89	72	15	0.208333333	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon5:c.A2542G:p.T848A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9987153	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	90807774	12A2p6	cell line	sgMsh2	90807774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	104	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon6:c.C2152T:p.L718L,Col6a3:NM_001243008:exon9:c.C3973T:p.L1325L"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999451	AGT	synonymous	NA	NA	NA	NA
M7	chr1	90822219	12A2p6	cell line	sgMsh2	90822219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	119	0	0	NA	exonic	Col6a3	nonsynonymous SNV	Col6a3:NM_001243008:exon4:c.T892C:p.Y298H	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997655	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	91168804	12A2p6	cell line	sgMsh2	91168804	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	123	0	0	NA	exonic	Rbm44	nonsynonymous SNV	Rbm44:NM_001033408:exon14:c.A2884C:p.K962Q	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.369225461	2	0.5746164	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	91431044	12A2p6	cell line	sgMsh2	91431044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	10	3	0.3	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon15:c.A1718C:p.E573A	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9981953	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	92982926	12A2p6	cell line	sgMsh2	92982926	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	85	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T359A:p.L120Q,Gpr35:NM_001271766:exon2:c.T359A:p.L120Q,Gpr35:NM_022320:exon2:c.T359A:p.L120Q"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9983886	CTG	nonsynonymous	TGCG	8	TGCGTGCG	NA
M7	chr1	93425296	12A2p6	cell line	sgMsh2	93425296	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	117	821	152	0.185140073	exonic	Hdlbp	nonsynonymous SNV	"Hdlbp:NM_001301364:exon12:c.C1483T:p.R495W,Hdlbp:NM_001357556:exon12:c.C1483T:p.R495W,Hdlbp:NM_133808:exon12:c.C1483T:p.R495W"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997373	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	93500465	12A2p6	cell line	sgMsh2	93500465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	147	730	102	0.139726027	exonic	Septin2	nonsynonymous SNV	"Septin2:NM_001159718:exon7:c.A482G:p.D161G,Septin2:NM_001159717:exon8:c.A602G:p.D201G,Septin2:NM_001159719:exon8:c.A602G:p.D201G,Septin2:NM_010891:exon8:c.A602G:p.D201G"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999521	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	93874525	12A2p6	cell line	sgMsh2	93874525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	66	0	0	NA	exonic	Gal3st2	synonymous SNV	Gal3st2:NM_199366:exon4:c.T627C:p.V209V	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9952797	TTC	synonymous	NA	NA	NA	NA
M7	chr1	93874743	12A2p6	cell line	sgMsh2	93874743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	111	0	0	NA	exonic	Gal3st2	nonsynonymous SNV	Gal3st2:NM_199366:exon4:c.A845G:p.Y282C	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996309	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	94024961	12A2p6	cell line	sgMsh2	94024961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	86	0	0	NA	exonic	Neu4	synonymous SNV	"Neu4:NM_173772:exon4:c.T982C:p.L328L,Neu4:NM_001310769:exon5:c.T1051C:p.L351L"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9984773	GTT	synonymous	NA	NA	NA	NA
M7	chr1	97646233	12A2p6	cell line	sgMsh2	97646233	A	G	SNV	Mutect2;Vardict	2	0.053	81	144	0	0	exonic	Macir	nonsynonymous SNV	"Macir:NM_001355071:exon2:c.T106C:p.C36R,Macir:NM_001355072:exon3:c.T106C:p.C36R,Macir:NM_001355073:exon3:c.T106C:p.C36R,Macir:NM_001355074:exon3:c.T106C:p.C36R,Macir:NM_133825:exon3:c.T106C:p.C36R"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.241591968	3	0.9997719	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	98466696	12A2p6	cell line	sgMsh2	98466696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	123	0	0	NA	exonic	Slco6d1	synonymous SNV	"Slco6d1:NM_001164233:exon7:c.A1104G:p.V368V,Slco6d1:NM_027584:exon7:c.A1104G:p.V368V"	1qD	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998131	TAT	synonymous	NA	NA	NA	NA
M7	chr1	100379213	12A2p6	cell line	sgMsh2	100379213	G	T	SNV	Mutect2;Vardict	2	0.03	236	0	0	NA	exonic	Cntnap5b	nonsynonymous SNV	Cntnap5b:NM_172851:exon17:c.G2654T:p.R885M	1qE1.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.136750171	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	106027531	12A2p6	cell line	sgMsh2	106027531	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	90	12	0	0	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon12:c.G1951T:p.D651Y,Zcchc2:NM_001122676:exon12:c.G1951T:p.D651Y"	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9987861	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	107047605	12A2p6	cell line	sgMsh2	107047605	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	214	0	0	NA	exonic	Serpinb3a	nonsynonymous SNV	Serpinb3a:NM_009126:exon6:c.G471T:p.K157N	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.14130851	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	107515526	12A2p6	cell line	sgMsh2	107515526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	106	10	2	0.2	exonic	Serpinb2	synonymous SNV	"Serpinb2:NM_001174170:exon2:c.G54A:p.Q18Q,Serpinb2:NM_011111:exon2:c.G54A:p.Q18Q"	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995099	AGA	synonymous	NA	NA	NA	NA
M7	chr1	110925087	12A2p6	cell line	sgMsh2	110925087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	134	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon7:c.T1117A:p.Y373N,Cdh19:NM_001356415:exon8:c.T1117A:p.Y373N"	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	1	0.9834244	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	111859493	12A2p6	cell line	sgMsh2	111859493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	153	5	0	0	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.C3311A:p.A1104E	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.911667805	1	0.9981492	TGC	nonsynonymous	GCT	8	GCTGCTGC	NA
M7	chr1	111862676	12A2p6	cell line	sgMsh2	111862676	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	227	6	5	0.833333333	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.A128G:p.K43R	1qE2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	116060165	12A2p6	cell line	sgMsh2	116060165	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	186	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon4:c.A425G:p.K142R,Cntnap5a:NM_001371013:exon4:c.A425G:p.K142R"	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999948	AAG	nonsynonymous	GCT	8	GCTGCTGC	NA
M7	chr1	116089370	12A2p6	cell line	sgMsh2	116089370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	166	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon5:c.T692C:p.L231P,Cntnap5a:NM_001371013:exon5:c.T692C:p.L231P"	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999837	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	118543148	12A2p6	cell line	sgMsh2	118543148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	107	46	15	0.326086957	exonic	Clasp1	nonsynonymous SNV	"Clasp1:NM_001293301:exon23:c.A2330G:p.D777G,Clasp1:NM_001359340:exon24:c.A2357G:p.D786G,Clasp1:NM_029709:exon24:c.A2354G:p.D785G,Clasp1:NM_001359338:exon25:c.A2381G:p.D794G,Clasp1:NM_001359341:exon25:c.A2465G:p.D822G,Clasp1:NM_001359342:exon25:c.A2462G:p.D821G,Clasp1:NM_001359346:exon25:c.A2381G:p.D794G,Clasp1:NM_001359330:exon26:c.A2489G:p.D830G,Clasp1:NM_001359336:exon26:c.A2405G:p.D802G,Clasp1:NM_001359339:exon26:c.A2489G:p.D830G,Clasp1:NM_001359343:exon26:c.A2444G:p.D815G,Clasp1:NM_001359345:exon26:c.A2405G:p.D802G,Clasp1:NM_001293300:exon27:c.A2513G:p.D838G,Clasp1:NM_001359329:exon27:c.A2552G:p.D851G,Clasp1:NM_001359334:exon27:c.A2552G:p.D851G,Clasp1:NM_001359335:exon27:c.A2552G:p.D851G,Clasp1:NM_001359337:exon27:c.A2513G:p.D838G,Clasp1:NM_001359347:exon27:c.A1283G:p.D428G,Clasp1:NM_001359328:exon28:c.A2576G:p.D859G,Clasp1:NM_001359331:exon28:c.A2576G:p.D859G"	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995369	GAT	nonsynonymous	TGA	11	TGATGATGATG	NA
M7	chr1	119527237	12A2p6	cell line	sgMsh2	119527237	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	157	44	20	0.454545455	exonic	Tmem185b	nonsynonymous SNV	Tmem185b:NM_146103:exon1:c.T727C:p.Y243H	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999728	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	120241517	12A2p6	cell line	sgMsh2	120241517	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	59	0	0	NA	exonic	Steap3	nonsynonymous SNV	"Steap3:NM_001379354:exon3:c.T935C:p.F312S,Steap3:NM_001379355:exon3:c.T965C:p.F322S,Steap3:NM_133186:exon3:c.T935C:p.F312S,Steap3:NM_001085409:exon4:c.T935C:p.F312S"	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.314525393	3	9.09E-05	GAA	nonsynonymous	GAA	10	GAAGAAGAAG	NA
M7	chr1	123445299	12A2p6	cell line	sgMsh2	123445299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	103	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon8:c.T611C:p.I204T	1qE2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.999419	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	127551395	12A2p6	cell line	sgMsh2	127551395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	97	34	5	0.147058824	exonic	Tmem163	nonsynonymous SNV	Tmem163:NM_028135:exon4:c.T386C:p.L129P	1qE3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9991836	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	129760458	12A2p6	cell line	sgMsh2	129760458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	66	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon9:c.A2105G:p.K702R	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.957251195	1	0.9891945	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	130190141	12A2p6	cell line	sgMsh2	130190141	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	239	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon24:c.T4293G:p.C1431W	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	131256936	12A2p6	cell line	sgMsh2	131256936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	131	28	5	0.178571429	exonic	Ikbke	nonsynonymous SNV	Ikbke:NM_019777:exon21:c.A2071G:p.M691V	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.861526075	1	0.9752657	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr1	131275169	12A2p6	cell line	sgMsh2	131275169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	71	11	2	0.181818182	exonic	Ikbke	synonymous SNV	Ikbke:NM_019777:exon5:c.A339G:p.L113L	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9964413	CTA	synonymous	NA	NA	NA	NA
M7	chr1	131931064	12A2p6	cell line	sgMsh2	131931064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	54	364	83	0.228021978	exonic	Nucks1	nonsynonymous SNV	"Nucks1:NM_001145804:exon7:c.A560G:p.K187R,Nucks1:NM_175294:exon7:c.A563G:p.K188R"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.939017839	1	0.975793	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	132023625	12A2p6	cell line	sgMsh2	132023625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	108	57	14	0.245614035	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376959:exon4:c.T397A:p.F133I,Elk4:NM_001376954:exon5:c.T1267A:p.F423I,Elk4:NM_001376955:exon5:c.T1267A:p.F423I,Elk4:NM_001376956:exon5:c.T1267A:p.F423I,Elk4:NM_007923:exon5:c.T1267A:p.F423I,Elk4:NM_001376957:exon6:c.T1267A:p.F423I,Elk4:NM_001376958:exon6:c.T1267A:p.F423I"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995624	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr1	132304732	12A2p6	cell line	sgMsh2	132304732	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	96	5	0	0	exonic	Klhdc8a	frameshift deletion	Klhdc8a:NM_144810:exon5:c.993delG:p.G333Vfs*5	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.893434449	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7	chr1	132991797	12A2p6	cell line	sgMsh2	132991797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	177	85	23	0.270588235	exonic	Mdm4	synonymous SNV	"Mdm4:NM_001302801:exon11:c.T1332C:p.P444P,Mdm4:NM_001302802:exon11:c.T1332C:p.P444P,Mdm4:NM_001302803:exon11:c.T1329C:p.P443P,Mdm4:NM_001302804:exon11:c.T948C:p.P316P,Mdm4:NM_008575:exon12:c.T1329C:p.P443P"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999913	GAG	synonymous	NA	NA	NA	NA
M7	chr1	133639049	12A2p6	cell line	sgMsh2	133639049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	232	297	56	0.188552189	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon6:c.G493A:p.D165N,Zc3h11a:NM_144530:exon6:c.G493A:p.D165N,Zc3h11a:NM_001276767:exon7:c.G493A:p.D165N"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999996	TCT	nonsynonymous	TCA	17	TCATCTTCATCATCATC	NA
M7	chr1	133657321	12A2p6	cell line	sgMsh2	133657321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	148	116	39	0.336206897	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T2277C:p.S759S	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.683750854	2	0.978905	CAC	synonymous	NA	NA	NA	NA
M7	chr1	133658840	12A2p6	cell line	sgMsh2	133658840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	170	146	26	0.178082192	exonic	Zbed6	nonsynonymous SNV	Zbed6:NM_001166552:exon1:c.A758C:p.N253T	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999987	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	133739185	12A2p6	cell line	sgMsh2	133739185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	75	6	1	0.166666667	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon3:c.A627G:p.G209G,Atp2b4:NM_213616:exon3:c.A627G:p.G209G"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.916226144	1	0.9820806	CTC	synonymous	NA	NA	NA	NA
M7	chr1	133903690	12A2p6	cell line	sgMsh2	133903690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	151	0	0	NA	exonic	Optc	synonymous SNV	"Optc:NM_001160421:exon3:c.A477G:p.V159V,Optc:NM_001160422:exon3:c.A477G:p.V159V,Optc:NM_054076:exon3:c.A477G:p.V159V,Optc:NM_001160420:exon4:c.A477G:p.V159V"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999618	GTA	synonymous	NA	NA	NA	NA
M7	chr1	134203040	12A2p6	cell line	sgMsh2	134203040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	144	9	1	0.111111111	exonic	Adora1	nonsynonymous SNV	"Adora1:NM_001008533:exon2:c.A892G:p.T298A,Adora1:NM_001291928:exon2:c.A622G:p.T208A,Adora1:NM_001291930:exon2:c.A466G:p.T156A,Adora1:NM_001039510:exon3:c.A892G:p.T298A,Adora1:NM_001282945:exon3:c.A892G:p.T298A"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.975484551	1	0.9998387	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	134300497	12A2p6	cell line	sgMsh2	134300497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	126	0	0	NA	exonic	Ppfia4	synonymous SNV	"Ppfia4:NM_001144855:exon26:c.C3300A:p.A1100A,Ppfia4:NM_001374777:exon27:c.C3300A:p.A1100A"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	1	0.9808343	AGG	synonymous	NA	NA	NA	NA
M7	chr1	134355657	12A2p6	cell line	sgMsh2	134355657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	95	232	43	0.185344828	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon4:c.T424C:p.Y142H,Tmem183a:NM_020588:exon4:c.T427C:p.Y143H"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	1	0.9665095	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	134487065	12A2p6	cell line	sgMsh2	134487065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	144	36	6	0.166666667	exonic	Klhl12	nonsynonymous SNV	"Klhl12:NM_001311136:exon9:c.G1191T:p.E397D,Klhl12:NM_153128:exon9:c.G1191T:p.E397D"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.916226144	1	0.9979926	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	135167045	12A2p6	cell line	sgMsh2	135167045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	124	0	0	NA	exonic	Gpr37l1	nonsynonymous SNV	Gpr37l1:NM_134438:exon1:c.A460G:p.I154V	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.88887611	1	0.9897167	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr1	135167376	12A2p6	cell line	sgMsh2	135167376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	48	0	0	NA	exonic	Gpr37l1	synonymous SNV	Gpr37l1:NM_134438:exon1:c.A129C:p.R43R	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9870035	GTC	synonymous	NA	NA	NA	NA
M7	chr1	135272375	12A2p6	cell line	sgMsh2	135272375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	112	94	19	0.20212766	exonic	Rnpep	nonsynonymous SNV	Rnpep:NM_145417:exon4:c.T841C:p.Y281H	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996512	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	135405832	12A2p6	cell line	sgMsh2	135405832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	97	306	58	0.189542484	exonic	Ipo9	nonsynonymous SNV	"Ipo9:NM_153774:exon10:c.A1111G:p.T371A,Ipo9:NM_001357575:exon11:c.A1003G:p.T335A,Ipo9:NM_001357576:exon11:c.A658G:p.T220A,Ipo9:NM_001357578:exon11:c.A265G:p.T89A,Ipo9:NM_001357577:exon12:c.A658G:p.T220A"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9991836	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	136118373	12A2p6	cell line	sgMsh2	136118373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	128	0	0	NA	exonic	Cacna1s	nonsynonymous SNV	"Cacna1s:NM_014193:exon41:c.A5115T:p.R1705S,Cacna1s:NM_001081023:exon42:c.A5172T:p.R1724S"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.961809534	1	0.999403	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	136153261	12A2p6	cell line	sgMsh2	136153261	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	43	25	11	0.44	exonic	Kif21b	synonymous SNV	Kif21b:NM_001039472:exon13:c.G1839T:p.S613S	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9828142	CGG	synonymous	NA	NA	NA	NA
M7	chr1	136165026	12A2p6	cell line	sgMsh2	136165026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	109	13	3	0.230769231	exonic	Kif21b	nonsynonymous SNV	Kif21b:NM_001039472:exon27:c.A3704C:p.D1235A	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995866	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	136625870	12A2p6	cell line	sgMsh2	136625870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	119	30	5	0.166666667	exonic	Zfp281	synonymous SNV	"Zfp281:NM_001160251:exon2:c.A585G:p.L195L,Zfp281:NM_177643:exon2:c.A585G:p.L195L"	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.856967736	1	0.9652671	TAC	synonymous	NA	NA	NA	NA
M7	chr1	139236840	12A2p6	cell line	sgMsh2	139236840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	92	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon9:c.T3728C:p.F1243S	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	1	0.9646679	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	139479369	12A2p6	cell line	sgMsh2	139479369	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	63	41	7	0.170731707	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.C5993A:p.A1998D	1qE4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9944088	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	139492825	12A2p6	cell line	sgMsh2	139492825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	93	40	11	0.275	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon27:c.T9215C:p.V3072A	1qF	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.879759432	1	0.9727794	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	139501801	12A2p6	cell line	sgMsh2	139501801	T	C	SNV	Mutect2;Vardict	2	0.024	224	0	0	NA	exonic	F13b	nonsynonymous SNV	F13b:NM_031164:exon1:c.T56C:p.L19P	1qF	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.109400137	3	1	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	139698220	12A2p6	cell line	sgMsh2	139698220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	107	0	0	NA	exonic	Gm4788	nonsynonymous SNV	"Gm4788:NM_001160304:exon14:c.A2338G:p.I780V,Gm4788:NM_001029977:exon15:c.A2515G:p.I839V,Gm4788:NM_001160303:exon15:c.A2512G:p.I838V"	1qF	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995369	ATA	nonsynonymous	AATA	8	AATAAATA	NA
M7	chr1	140246265	12A2p6	cell line	sgMsh2	140246265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	90	0	0	NA	exonic	Kcnt2	synonymous SNV	Kcnt2:NM_001081027:exon1:c.T9C:p.D3D	1qF	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9987861	ATT	synonymous	NA	NA	NA	NA
M7	chr1	144139638	12A2p6	cell line	sgMsh2	144139638	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	204	0	0	NA	exonic	Rgs13	nonsynonymous SNV	Rgs13:NM_153171:exon6:c.C340T:p.R114C	1qF	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.145866849	3	1	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr1	150573530	12A2p6	cell line	sgMsh2	150573530	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.235	177	0	0	NA	exonic	Hmcn1	stopgain	Hmcn1:NM_001024720:exon105:c.C16357T:p.Q5453X	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999913	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	150573532	12A2p6	cell line	sgMsh2	150573532	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.235	177	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon105:c.A16355T:p.Y5452F	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999913	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	150652555	12A2p6	cell line	sgMsh2	150652555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	169	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon64:c.A9841G:p.R3281G	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999863	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	150675584	12A2p6	cell line	sgMsh2	150675584	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	178	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon51:c.C7919T:p.A2640V	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.200566917	3	1.01E-09	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	150686813	12A2p6	cell line	sgMsh2	150686813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	177	0	0	NA	exonic	Hmcn1	frameshift deletion	Hmcn1:NM_001024720:exon45:c.6993delC:p.L2332fs*0	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7	chr1	151411279	12A2p6	cell line	sgMsh2	151411279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	118	64	17	0.265625	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon6:c.T461G:p.I154S	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997518	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	151420172	12A2p6	cell line	sgMsh2	151420172	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	62	33	7	0.212121212	exonic	Swt1	synonymous SNV	Swt1:NM_025819:exon4:c.G153A:p.K51K	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9940844	CCT	synonymous	T	5	TTTTT	NA
M7	chr1	151453933	12A2p6	cell line	sgMsh2	151453933	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	179	74	17	0.22972973	exonic	Trmt1l	nonsynonymous SNV	"Trmt1l:NM_001357569:exon12:c.A1626T:p.E542D,Trmt1l:NM_001357570:exon12:c.A822T:p.E274D,Trmt1l:NM_026876:exon12:c.A1626T:p.E542D"	1qG1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999922	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	152854329	12A2p6	cell line	sgMsh2	152854329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	60	112	29	0.258928571	exonic	Smg7	synonymous SNV	"Smg7:NM_001005507:exon11:c.T1212C:p.D404D,Smg7:NM_001160256:exon11:c.T1212C:p.D404D,Smg7:NM_001160257:exon12:c.T1236C:p.D412D,Smg7:NM_001359257:exon12:c.T207C:p.D69D"	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9933783	CAT	synonymous	NA	NA	NA	NA
M7	chr1	153154408	12A2p6	cell line	sgMsh2	153154408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	132	155	32	0.206451613	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon5:c.G487A:p.G163R	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998878	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr1	154398634	12A2p6	cell line	sgMsh2	154398634	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	54	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon47:c.C6581T:p.A2194V	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.729334244	1	0.5862193	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	155129292	12A2p6	cell line	sgMsh2	155129292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	193	24	8	0.333333333	exonic	Mr1	nonsynonymous SNV	"Mr1:NM_001355062:exon6:c.T788C:p.V263A,Mr1:NM_001355063:exon6:c.T665C:p.V222A,Mr1:NM_008209:exon6:c.T1001C:p.V334A"	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999965	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	155146647	12A2p6	cell line	sgMsh2	155146647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	115	20	3	0.15	exonic	Mr1	nonsynonymous SNV	Mr1:NM_008209:exon1:c.A40C:p.K14Q	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.998276246	1	0.999688	TTC	nonsynonymous	GCTTC	10	GCTTCGCTTC	NA
M7	chr1	155217499	12A2p6	cell line	sgMsh2	155217499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	46	0	0	NA	exonic	BC034090	nonsynonymous SNV	BC034090:NM_001370865:exon9:c.A3298G:p.T1100A	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9854647	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	155330376	12A2p6	cell line	sgMsh2	155330376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	143	59	10	0.169491525	exonic	Xpr1	nonsynonymous SNV	Xpr1:NM_011273:exon5:c.A559G:p.T187A	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.925342822	1	0.9985896	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	155933429	12A2p6	cell line	sgMsh2	155933429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	78	28	7	0.25	exonic	Cep350	nonsynonymous SNV	Cep350:NM_001039184:exon10:c.A1400G:p.E467G	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9976049	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	156635173	12A2p6	cell line	sgMsh2	156635173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	116	45	14	0.311111111	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.A1517G:p.Q506R,Abl2:NM_009595:exon9:c.A1517G:p.Q506R"	1qG3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	158247106	12A2p6	cell line	sgMsh2	158247106	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	87	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon8:c.C1444A:p.P482T	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.870642753	1	0.9613799	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	158251397	12A2p6	cell line	sgMsh2	158251397	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.099	66	0	0	NA	exonic	Brinp2	synonymous SNV	Brinp2:NM_207583:exon6:c.G855A:p.E285E	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.451275563	2	0.9898018	CCT	synonymous	NA	NA	NA	NA
M7	chr1	158667577	12A2p6	cell line	sgMsh2	158667577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	52	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon19:c.A3194G:p.Y1065C,Astn1:NM_007495:exon19:c.A3170G:p.Y1057C"	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.856967736	1	0.9135326	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	158848221	12A2p6	cell line	sgMsh2	158848221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	101	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon8:c.T2954C:p.I985T	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9993492	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	158936779	12A2p6	cell line	sgMsh2	158936779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	116	0	0	NA	exonic	Pappa2	synonymous SNV	Pappa2:NM_001085376:exon3:c.T1161C:p.A387A	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	TAG	synonymous	NA	NA	NA	NA
M7	chr1	159278090	12A2p6	cell line	sgMsh2	159278090	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	214	20	7	0.35	exonic	Cop1	nonsynonymous SNV	"Cop1:NM_001360878:exon9:c.A964T:p.S322C,Cop1:NM_011931:exon9:c.A976T:p.S326C"	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999989	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	159851961	12A2p6	cell line	sgMsh2	159851961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	89	0	0	NA	exonic	Tnr	synonymous SNV	Tnr:NM_022312:exon4:c.A504G:p.Q168Q	1qH1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9987153	AAC	synonymous	NA	NA	NA	NA
M7	chr1	161157126	12A2p6	cell line	sgMsh2	161157126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	284	0	0	NA	exonic	Tex50	synonymous SNV	Tex50:NM_001195189:exon2:c.T543C:p.T181T	1qH2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.943576178	1	0.9999977	CAG	synonymous	NA	NA	NA	NA
M7	chr1	162545775	12A2p6	cell line	sgMsh2	162545775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	107	20	4	0.2	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T906C:p.I302I	1qH2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.902551127	1	0.9899867	AAA	synonymous	NA	NA	NA	NA
M7	chr1	162546462	12A2p6	cell line	sgMsh2	162546462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	159	27	7	0.259259259	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T219C:p.D73D	1qH2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999758	TAT	synonymous	NA	NA	NA	NA
M7	chr1	162955215	12A2p6	cell line	sgMsh2	162955215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	275	0	0	NA	exonic	Fmo3	nonsynonymous SNV	Fmo3:NM_008030:exon8:c.A1232C:p.E411A	1qH2.1	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.975484551	1	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	164217413	12A2p6	cell line	sgMsh2	164217413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	120	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon24:c.A6269G:p.K2090R	1qH2.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997784	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	165336829	12A2p6	cell line	sgMsh2	165336829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	120	98	21	0.214285714	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon17:c.A2376G:p.L792L	1qH2.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997784	CTA	synonymous	NA	NA	NA	NA
M7	chr1	165351045	12A2p6	cell line	sgMsh2	165351045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	113	25	0.221238938	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon14:c.T1914C:p.H638H	1qH2.2	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.993717907	1	0.9999522	TAT	synonymous	NA	NA	NA	NA
M7	chr1	165576619	12A2p6	cell line	sgMsh2	165576619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	80	0	0	NA	exonic	Adcy10	synonymous SNV	"Adcy10:NM_001357427:exon34:c.A3354G:p.A1118A,Adcy10:NM_173029:exon34:c.A4842G:p.A1614A"	1qH2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.660959158	2	0.8670504	CAT	synonymous	NA	NA	NA	NA
M7	chr1	165875869	12A2p6	cell line	sgMsh2	165875869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	122	22	6	0.272727273	exonic	Pou2f1	nonsynonymous SNV	"Pou2f1:NM_198932:exon16:c.G2179T:p.G727W,Pou2f1:NM_198933:exon16:c.G2146T:p.G716W,Pou2f1:NM_001368808:exon17:c.G2182T:p.G728W,Pou2f1:NM_011137:exon17:c.G2251T:p.G751W,Pou2f1:NM_198934:exon17:c.G2218T:p.G740W"	1qH2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.820501024	1	0.8861945	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	167635711	12A2p6	cell line	sgMsh2	167635711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	95	0	0	NA	exonic	Rxrg	synonymous SNV	"Rxrg:NM_001159731:exon8:c.T781C:p.L261L,Rxrg:NM_009107:exon9:c.T1150C:p.L384L"	1qH2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9990856	TTT	synonymous	NA	NA	NA	NA
M7	chr1	167846641	12A2p6	cell line	sgMsh2	167846641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	147	0	0	NA	exonic	Lmx1a	synonymous SNV	Lmx1a:NM_033652:exon8:c.A1029G:p.T343T	1qH2.3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999521	CAT	synonymous	NA	NA	NA	NA
M7	chr1	170311760	12A2p6	cell line	sgMsh2	170311760	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	68	0	0	NA	exonic	Spata46	frameshift deletion	Spata46:NM_001039593:exon2:c.327delC:p.R111Gfs*19	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	ACC	frameshift	NA	NA	NA	-1
M7	chr1	170867653	12A2p6	cell line	sgMsh2	170867653	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	54	39	13	0.333333333	exonic	Atf6	nonsynonymous SNV	Atf6:NM_001081304:exon1:c.T49A:p.W17R	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9907182	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	170907874	12A2p6	cell line	sgMsh2	170907874	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	17	0	0	NA	exonic	Fcrlb	nonsynonymous SNV	Fcrlb:NM_001029984:exon5:c.C830A:p.P277Q	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.928991	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	170912927	12A2p6	cell line	sgMsh2	170912927	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	104	0	0	NA	exonic	Fcrlb	synonymous SNV	Fcrlb:NM_001029984:exon1:c.A15T:p.A5A	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.834176041	1	0.9173796	CTG	synonymous	NA	NA	NA	NA
M7	chr1	171054004	12A2p6	cell line	sgMsh2	171054004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	263	3	2	0.666666667	exonic	Fcgr3	nonsynonymous SNV	"Fcgr3:NM_001356511:exon4:c.A551G:p.Y184C,Fcgr3:NM_010188:exon4:c.A554G:p.Y185C"	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999999	GTA	nonsynonymous	AGT	9	AGTAGTAGT	NA
M7	chr1	171158906	12A2p6	cell line	sgMsh2	171158906	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	134	0	0	NA	exonic	Mpz	frameshift deletion	"Mpz:NM_001315499:exon3:c.388delA:p.N131Tfs*4,Mpz:NM_008623:exon5:c.388delA:p.N131Tfs*4"	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.939017839	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr1	171236387	12A2p6	cell line	sgMsh2	171236387	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	84	316	38	0.120253165	exonic	Ndufs2	stopgain	Ndufs2:NM_153064:exon11:c.T1266A:p.C422X	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9982947	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	179	65	32	0.492307692	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999922	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr1	172119922	12A2p6	cell line	sgMsh2	172119922	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	128	454	101	0.22246696	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon31:c.A3304C:p.I1102L	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998593	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	172244047	12A2p6	cell line	sgMsh2	172244047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	76	0	0	NA	exonic	Atp1a4	nonsynonymous SNV	Atp1a4:NM_013734:exon11:c.A1480T:p.N494Y	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9973179	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	172290712	12A2p6	cell line	sgMsh2	172290712	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	113	0	0	NA	exonic	Atp1a2	nonsynonymous SNV	Atp1a2:NM_178405:exon5:c.A394T:p.I132F	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996705	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr1	172326225	12A2p6	cell line	sgMsh2	172326225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	67	0	0	NA	exonic	Kcnj9	nonsynonymous SNV	"Kcnj9:NM_001360808:exon3:c.T331C:p.F111L,Kcnj9:NM_008429:exon3:c.T331C:p.F111L"	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.939017839	1	0.9852213	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr1	172478158	12A2p6	cell line	sgMsh2	172478158	T	G	SNV	Mutect2;Vardict	2	0.057	97	5	0	0	exonic	Slamf9	nonsynonymous SNV	Slamf9:NM_029612:exon4:c.T757G:p.F253V	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.259825324	3	0.9998314	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	172560771	12A2p6	cell line	sgMsh2	172560771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	82	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon4:c.T641C:p.I214T	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9980902	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr1	172584444	12A2p6	cell line	sgMsh2	172584444	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	115	0	0	NA	exonic	Slamf8	nonsynonymous SNV	Slamf8:NM_029084:exon3:c.T563C:p.L188P	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.911667805	1	0.9941013	CAG	nonsynonymous	CCCAGT	12	CCCAGTCCCAGT	NA
M7	chr1	174028199	12A2p6	cell line	sgMsh2	174028199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	106	0	0	NA	exonic	Ifi205	synonymous SNV	Ifi205:NM_172648:exon2:c.A264G:p.E88E	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.907109466	1	0.9910644	CTT	synonymous	NA	NA	NA	NA
M7	chr1	174069592	12A2p6	cell line	sgMsh2	174069592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	162	0	0	NA	exonic	Olfr430	nonsynonymous SNV	Olfr430:NM_146718:exon1:c.T293C:p.L98P	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999795	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr1	174218443	12A2p6	cell line	sgMsh2	174218443	T	G	SNV	Mutect2;Vardict	2	0.038	139	0	0	NA	exonic	Spta1	nonsynonymous SNV	Spta1:NM_011465:exon34:c.T4772G:p.L1591R	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.173216883	3	1.09E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	174250568	12A2p6	cell line	sgMsh2	174250568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	105	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.T358C:p.F120L	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9994813	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	175705958	12A2p6	cell line	sgMsh2	175705958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	108	0	0	NA	exonic	Wdr64	synonymous SNV	Wdr64:NM_029453:exon2:c.T159C:p.Y53Y	1qH3	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.98004289	1	0.9991727	ATG	synonymous	NA	NA	NA	NA
M7	chr1	176274706	12A2p6	cell line	sgMsh2	176274706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	35	0	0	NA	exonic	Pld5	nonsynonymous SNV	Pld5:NM_176916:exon1:c.A169G:p.R57G	1qH4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.973208	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr1	180067347	12A2p6	cell line	sgMsh2	180067347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	235	59	16	0.271186441	exonic	Cdc42bpa	nonsynonymous SNV	"Cdc42bpa:NM_001033285:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346804:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346805:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359541:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359542:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359543:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359544:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359545:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359546:exon9:c.G884A:p.S295N,Cdc42bpa:NM_001359547:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359548:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359549:exon9:c.G779A:p.S260N"	1qH4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	180144741	12A2p6	cell line	sgMsh2	180144741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	164	72	18	0.25	exonic	Cdc42bpa	synonymous SNV	"Cdc42bpa:NM_001346805:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001359544:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001346804:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359541:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359545:exon29:c.T4008C:p.S1336S,Cdc42bpa:NM_001033285:exon30:c.T4107C:p.S1369S,Cdc42bpa:NM_001359543:exon30:c.T4116C:p.S1372S,Cdc42bpa:NM_001359549:exon30:c.T3696C:p.S1232S,Cdc42bpa:NM_001359542:exon31:c.T4155C:p.S1385S,Cdc42bpa:NM_001359546:exon31:c.T3900C:p.S1300S,Cdc42bpa:NM_001359548:exon31:c.T3804C:p.S1268S,Cdc42bpa:NM_001359547:exon32:c.T3843C:p.S1281S"	1qH4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999817	GTG	synonymous	NA	NA	NA	NA
M7	chr1	181211090	12A2p6	cell line	sgMsh2	181211090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	46	216	41	0.189814815	exonic	Wdr26	synonymous SNV	Wdr26:NM_145514:exon1:c.T348C:p.N116N	1qH4	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.779475973	1	0.7715108	CAT	synonymous	NA	NA	NA	NA
M7	chr1	181816916	12A2p6	cell line	sgMsh2	181816916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	114	184	48	0.260869565	exonic	Lbr	nonsynonymous SNV	Lbr:NM_133815:exon14:c.T1823C:p.L608P	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.879759432	1	0.9823785	CAG	nonsynonymous	CCAGG	12	CCAGGCCAGGCC	NA
M7	chr1	181817266	12A2p6	cell line	sgMsh2	181817266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	108	133	23	0.172932331	exonic	Lbr	synonymous SNV	Lbr:NM_133815:exon13:c.T1719C:p.C573C	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.756684278	2	0.5091853	CAC	synonymous	NA	NA	NA	NA
M7	chr1	182279256	12A2p6	cell line	sgMsh2	182279256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	200	241	62	0.257261411	exonic	Degs1	nonsynonymous SNV	"Degs1:NM_001360783:exon2:c.T437C:p.I146T,Degs1:NM_007853:exon2:c.T545C:p.I182T"	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999976	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	182973202	12A2p6	cell line	sgMsh2	182973202	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	114	2	0	0	exonic	Tlr5	nonsynonymous SNV	Tlr5:NM_016928:exon4:c.G70T:p.G24C	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.797709329	1	0.7781491	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr1	185345386	12A2p6	cell line	sgMsh2	185345386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	203	92	21	0.22826087	exonic	Bpnt1	synonymous SNV	"Bpnt1:NM_001347212:exon3:c.G132A:p.P44P,Bpnt1:NM_001347210:exon4:c.G297A:p.P99P,Bpnt1:NM_011794:exon4:c.G297A:p.P99P"	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.537884005	2	0.9999996	CGT	synonymous	NA	NA	NA	NA
M7	chr1	188066447	12A2p6	cell line	sgMsh2	188066447	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	68	0	0	NA	exonic	Esrrg	nonsynonymous SNV	"Esrrg:NM_011935:exon3:c.G579A:p.M193I,Esrrg:NM_001243792:exon4:c.G510A:p.M170I,Esrrg:NM_001357534:exon4:c.G510A:p.M170I,Esrrg:NM_001357535:exon4:c.G510A:p.M170I,Esrrg:NM_001357536:exon4:c.G528A:p.M176I"	1qH5	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.866084414	1	0.9411347	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr1	188849011	12A2p6	cell line	sgMsh2	188849011	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	128	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon56:c.C11087A:p.P3696H	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998593	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr1	189652379	12A2p6	cell line	sgMsh2	189652379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	231	38	11	0.289473684	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon13:c.T7703C:p.V2568A	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.970926212	1	0.999997	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	190871597	12A2p6	cell line	sgMsh2	190871597	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	129	26	5	0.192307692	exonic	Rps6kc1	nonsynonymous SNV	Rps6kc1:NM_178775:exon6:c.T827C:p.V276A	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.966367873	1	0.9995205	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	191013388	12A2p6	cell line	sgMsh2	191013388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	150	7	1	0.142857143	exonic	Flvcr1	synonymous SNV	"Flvcr1:NM_001313747:exon3:c.T645C:p.N215N,Flvcr1:NM_001081259:exon4:c.T1083C:p.N361N"	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.961809534	1	0.9997802	GAT	synonymous	NA	NA	NA	NA
M7	chr1	191058906	12A2p6	cell line	sgMsh2	191058906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	109	11	2	0.181818182	exonic	Tatdn3	nonsynonymous SNV	"Tatdn3:NM_001163421:exon4:c.A170G:p.N57S,Tatdn3:NM_001163422:exon4:c.A170G:p.N57S,Tatdn3:NM_001357166:exon4:c.A170G:p.N57S,Tatdn3:NM_026895:exon4:c.A170G:p.N57S"	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995866	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.1852	81	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.844204387	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M7	chr1	191619690	12A2p6	cell line	sgMsh2	191619690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	133	53	14	0.264150943	exonic	Ints7	nonsynonymous SNV	"Ints7:NM_001306204:exon17:c.A2138G:p.H713R,Ints7:NM_001306203:exon18:c.A2138G:p.H713R,Ints7:NM_178632:exon19:c.A2510G:p.H837R"	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999894	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr1	192846378	12A2p6	cell line	sgMsh2	192846378	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	73	1	0	0	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.A1129T:p.M377L,Sertad4:NM_198247:exon4:c.A1129T:p.M377L"	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.897992788	1	0.9719763	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr1	194649585	12A2p6	cell line	sgMsh2	194649585	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	122	11	3	0.272727273	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon3:c.T1318C:p.Y440H	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998022	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr1	194780562	12A2p6	cell line	sgMsh2	194780562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	112	8	4	0.5	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon13:c.A2636G:p.H879R	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996512	CAT	nonsynonymous	CCAT	8	CCATCCAT	NA
M7	chr1	194806431	12A2p6	cell line	sgMsh2	194806431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	54	16	3	0.1875	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon28:c.A5014G:p.M1672V	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.70198421	2	5.97E-08	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr1	194812106	12A2p6	cell line	sgMsh2	194812106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	86	19	2	0.105263158	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon32:c.A5630G:p.Q1877R	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	0.597142412	2	0.9772279	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr1	195158695	12A2p6	cell line	sgMsh2	195158695	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	116	2	2	1	exonic	Cr2	nonsynonymous SNV	"Cr2:NM_007758:exon7:c.T1288G:p.F430V,Cr2:NM_001368765:exon14:c.T2416G:p.F806V"	1qH6	chr1-3216742-195166209	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	3919204	12A2p6	cell line	sgMsh2	3919204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	239	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon4:c.A578G:p.K193R,Plekhg1:NM_001159942:exon5:c.A578G:p.K193R"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999996	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	4418620	12A2p6	cell line	sgMsh2	4418620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	258	4	1	0.25	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon5:c.A628G:p.I210V,Rmnd1:NM_001358796:exon6:c.A628G:p.I210V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	4512797	12A2p6	cell line	sgMsh2	4512797	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	103	0	0	NA	exonic	Ccdc170	nonsynonymous SNV	"Ccdc170:NM_001195672:exon2:c.C94G:p.L32V,Ccdc170:NM_001370992:exon2:c.C112G:p.L38V,Ccdc170:NM_001370993:exon2:c.C112G:p.L38V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	5022126	12A2p6	cell line	sgMsh2	5022126	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	56	26	8	0.307692308	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon17:c.A2731T:p.I911F,Syne1:NM_001079686:exon55:c.A8914T:p.I2972F,Syne1:NM_001347711:exon146:c.A26317T:p.I8773F,Syne1:NM_001347732:exon146:c.A26281T:p.I8761F"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9917055	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	5270944	12A2p6	cell line	sgMsh2	5270944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	88	6	3	0.5	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon58:c.A9355G:p.M3119V,Syne1:NM_001347732:exon58:c.A9334G:p.M3112V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9925622	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr10	5289488	12A2p6	cell line	sgMsh2	5289488	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	57	6	1	0.166666667	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon55:c.G8722A:p.A2908T,Syne1:NM_001347732:exon55:c.G8701A:p.A2901T"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9862611	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr10	6890590	12A2p6	cell line	sgMsh2	6890590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	95	2	1	0.5	exonic	Ipcef1	nonsynonymous SNV	"Ipcef1:NM_001170800:exon9:c.T1106C:p.M369T,Ipcef1:NM_001347225:exon9:c.T1118C:p.M373T"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	8741496	12A2p6	cell line	sgMsh2	8741496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	67	33	10	0.303030303	exonic	Sash1	nonsynonymous SNV	Sash1:NM_175155:exon14:c.T1645A:p.C549S	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9905405	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	9809188	12A2p6	cell line	sgMsh2	9809188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	54	22	11	0.5	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon15:c.A1467C:p.K489N	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.660959158	2	0.6777523	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	10689376	12A2p6	cell line	sgMsh2	10689376	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	35	0	0	NA	exonic	Grm1	nonsynonymous SNV	Grm1:NM_016976:exon9:c.A3187T:p.T1063S	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9127782	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	11171883	12A2p6	cell line	sgMsh2	11171883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	263	30	7	0.233333333	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon14:c.A2974G:p.M992V,Shprh:NM_001284354:exon14:c.A2974G:p.M992V,Shprh:NM_172937:exon14:c.A2974G:p.M992V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	12421645	12A2p6	cell line	sgMsh2	12421645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	172	79	28	0.35443038	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon65:c.T9440G:p.L3147R	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999884	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	12941485	12A2p6	cell line	sgMsh2	12941485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	129	30	3	0.1	exonic	Stx11	nonsynonymous SNV	"Stx11:NM_001163590:exon2:c.T494C:p.L165P,Stx11:NM_001163591:exon2:c.T494C:p.L165P,Stx11:NM_029075:exon3:c.T494C:p.L165P"	10qA2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	18473025	12A2p6	cell line	sgMsh2	18473025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	114	25	7	0.28	exonic	Nhsl1	nonsynonymous SNV	"Nhsl1:NM_001163592:exon2:c.G165T:p.E55D,Nhsl1:NM_173390:exon2:c.G309T:p.E103D"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9988727	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	61	2	2	1	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.9937412	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	20357669	12A2p6	cell line	sgMsh2	20357669	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	115	22	6	0.272727273	exonic	Mtfr2	nonsynonymous SNV	Mtfr2:NM_027930:exon6:c.A983C:p.N328T	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	20979609	12A2p6	cell line	sgMsh2	20979609	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	134	7	0	0	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001358561:exon11:c.G1816T:p.G606C,Ahi1:NM_026203:exon11:c.G1816T:p.G606C"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.943681	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	21296145	12A2p6	cell line	sgMsh2	21296145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	109	3	0	0	exonic	Hbs1l	synonymous SNV	"Hbs1l:NM_001042593:exon1:c.T12C:p.H4H,Hbs1l:NM_001145209:exon1:c.T12C:p.H4H,Hbs1l:NM_019702:exon1:c.T12C:p.H4H"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995866	ATC	synonymous	NA	NA	NA	NA
M7	chr10	21382316	12A2p6	cell line	sgMsh2	21382316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	69	0	0	NA	exonic	Aldh8a1	nonsynonymous SNV	Aldh8a1:NM_178713:exon3:c.C311T:p.T104I	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr10	22664493	12A2p6	cell line	sgMsh2	22664493	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	112	0	0	NA	exonic	Slc2a12	synonymous SNV	Slc2a12:NM_178934:exon2:c.G246A:p.E82E	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996512	AGC	synonymous	NA	NA	NA	NA
M7	chr10	23157368	12A2p6	cell line	sgMsh2	23157368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	97	0	0	NA	exonic	Eya4	nonsynonymous SNV	"Eya4:NM_001347372:exon8:c.A539G:p.K180R,Eya4:NM_010167:exon8:c.A539G:p.K180R"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8766572	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	168	19	0.113095238	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.8973038	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	24596360	12A2p6	cell line	sgMsh2	24596360	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.183	88	150	40	0.266666667	exonic	Ccn2	synonymous SNV	Ccn2:NM_010217:exon3:c.A300G:p.A100A	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.09244548	CAC	synonymous	NA	NA	NA	NA
M7	chr10	24596386	12A2p6	cell line	sgMsh2	24596386	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	86	220	64	0.290909091	exonic	Ccn2	nonsynonymous SNV	Ccn2:NM_010217:exon3:c.A326G:p.Y109C	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	27041118	12A2p6	cell line	sgMsh2	27041118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	157	0	0	NA	exonic	Lama2	synonymous SNV	Lama2:NM_008481:exon47:c.T6810C:p.D2270D	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.756684278	2	0.6862147	CAT	synonymous	NA	NA	NA	NA
M7	chr10	28465801	12A2p6	cell line	sgMsh2	28465801	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	172	116	28	0.24137931	exonic	Ptprk	nonsynonymous SNV	"Ptprk:NM_001359355:exon8:c.G1203T:p.Q401H,Ptprk:NM_001359356:exon8:c.G1203T:p.Q401H,Ptprk:NM_008983:exon8:c.G1203T:p.Q401H"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999884	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	28587027	12A2p6	cell line	sgMsh2	28587027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	74	114	29	0.254385965	exonic	Ptprk	synonymous SNV	"Ptprk:NM_001359356:exon26:c.T3672C:p.F1224F,Ptprk:NM_008983:exon27:c.T3708C:p.F1236F,Ptprk:NM_001359355:exon29:c.T3750C:p.F1250F"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.9969966	TTT	synonymous	T	5	TTTTT	NA
M7	chr10	29224559	12A2p6	cell line	sgMsh2	29224559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	137	13	5	0.384615385	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon5:c.A927G:p.Q309Q	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9974906	AAG	synonymous	NA	NA	NA	NA
M7	chr10	29227239	12A2p6	cell line	sgMsh2	29227239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	55	10	7	0.7	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon6:c.A1815G:p.K605K	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9641011	AAG	synonymous	NA	NA	NA	NA
M7	chr10	29344614	12A2p6	cell line	sgMsh2	29344614	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	99	116	25	0.215517241	exonic	Echdc1	frameshift deletion	"Echdc1:NM_001110195:exon6:c.765delA:p.K257Nfs*10,Echdc1:NM_025855:exon6:c.834delA:p.K280Nfs*10"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.961809534	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr10	30614755	12A2p6	cell line	sgMsh2	30614755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	32	63	10	0.158730159	exonic	Hint3	nonsynonymous SNV	Hint3:NM_025798:exon2:c.A226G:p.I76V	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.0924136	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	31379230	12A2p6	cell line	sgMsh2	31379230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	112	160	29	0.18125	exonic	Tpd52l1	synonymous SNV	"Tpd52l1:NM_001359364:exon2:c.G120A:p.K40K,Tpd52l1:NM_001359365:exon2:c.G120A:p.K40K,Tpd52l1:NM_001359366:exon2:c.G120A:p.K40K,Tpd52l1:NM_009413:exon2:c.G120A:p.K40K"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9989384	CCT	synonymous	NA	NA	NA	NA
M7	chr10	33186688	12A2p6	cell line	sgMsh2	33186688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	87	0	0	NA	exonic	Trdn	nonsynonymous SNV	"Trdn:NM_001364696:exon7:c.A598G:p.M200V,Trdn:NM_001364697:exon7:c.A598G:p.M200V,Trdn:NM_029726:exon7:c.A598G:p.M200V"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	33233877	12A2p6	cell line	sgMsh2	33233877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	124	0	0	NA	exonic	Trdn	synonymous SNV	Trdn:NM_029726:exon10:c.A870G:p.P290P	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.5958783	CAC	synonymous	CCA	9	CCACCACCA	NA
M7	chr10	33444726	12A2p6	cell line	sgMsh2	33444726	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	63	0	0	NA	exonic	Trdn	stopgain	Trdn:NM_029726:exon30:c.G1654T:p.G552X	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	33930261	12A2p6	cell line	sgMsh2	33930261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	150	30	5	0.166666667	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon7:c.T1042C:p.F348L,Zup1:NM_001359456:exon7:c.T1042C:p.F348L,Zup1:NM_028287:exon7:c.T1042C:p.F348L"	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999596	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	34126243	12A2p6	cell line	sgMsh2	34126243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	147	0	0	NA	exonic	Calhm6	synonymous SNV	Calhm6:NM_175449:exon2:c.A843G:p.E281E	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999233	CTT	synonymous	NA	NA	NA	NA
M7	chr10	34127600	12A2p6	cell line	sgMsh2	34127600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	30	0	0	NA	exonic	Calhm6	nonsynonymous SNV	Calhm6:NM_175449:exon1:c.A310G:p.T104A	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9431224	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	34298486	12A2p6	cell line	sgMsh2	34298486	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	45	0	0	NA	exonic	Tspyl4	nonsynonymous SNV	Tspyl4:NM_030203:exon1:c.C973T:p.H325Y	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr10	34298524	12A2p6	cell line	sgMsh2	34298524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	41	0	0	NA	exonic	Tspyl4	synonymous SNV	Tspyl4:NM_030203:exon1:c.T1011C:p.N337N	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9807891	ATA	synonymous	AGGG	8	AGGGAGGG	NA
M7	chr10	34411414	12A2p6	cell line	sgMsh2	34411414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	20	7	0.35	exonic	Nt5dc1	nonsynonymous SNV	Nt5dc1:NM_176968:exon2:c.T139C:p.Y47H	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	39082766	12A2p6	cell line	sgMsh2	39082766	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.158	74	0	0	NA	exonic	Lama4	frameshift deletion	Lama4:NM_010681:exon26:c.3581delG:p.C1196fs*0	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.720217566	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7	chr10	40003010	12A2p6	cell line	sgMsh2	40003010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	325	0	0	NA	exonic	Mfsd4b1	nonsynonymous SNV	Mfsd4b1:NM_144821:exon4:c.T890C:p.I297T	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	2.97E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	40254307	12A2p6	cell line	sgMsh2	40254307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	170	188	38	0.20212766	exonic	Gtf3c6	synonymous SNV	"Gtf3c6:NM_001359491:exon4:c.T231C:p.D77D,Gtf3c6:NM_001359492:exon4:c.T42C:p.D14D,Gtf3c6:NM_001359493:exon4:c.T42C:p.D14D,Gtf3c6:NM_026113:exon4:c.T228C:p.D76D"	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.999987	TAT	synonymous	NA	NA	NA	NA
M7	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	136	49	10	0.204081633	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	42197678	12A2p6	cell line	sgMsh2	42197678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	42	14	3	0.214285714	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A842G:p.D281G,Foxo3:NM_019740:exon3:c.A842G:p.D281G"	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	42318676	12A2p6	cell line	sgMsh2	42318676	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	123	37	0	0	exonic	Afg1l	nonsynonymous SNV	"Afg1l:NM_001359297:exon10:c.A690G:p.I230M,Afg1l:NM_145743:exon11:c.A1119G:p.I373M"	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.305408715	3	0.9983898	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	44441731	12A2p6	cell line	sgMsh2	44441731	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	78	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.C1095G:p.G365G	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9727209	GGC	synonymous	NA	NA	NA	NA
M7	chr10	45711439	12A2p6	cell line	sgMsh2	45711439	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	123	11	2	0.181818182	exonic	Hace1	nonsynonymous SNV	Hace1:NM_172473:exon24:c.A2633C:p.N878T	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	49113385	12A2p6	cell line	sgMsh2	49113385	-	T	Insertion	Strelka2;Vardict	2	0.2174	92	0	0	NA	exonic	Grik2	frameshift insertion	"Grik2:NM_001111268:exon16:c.2546dupA:p.N849Kfs*10,Grik2:NM_001358866:exon16:c.2546dupA:p.N849Kfs*10,Grik2:NM_010349:exon16:c.2546dupA:p.N849Kfs*25"	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.990982904	NA	NA	CGT	frameshift	T	8	TTTTTTTT	1
M7	chr10	49132856	12A2p6	cell line	sgMsh2	49132856	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	107	0	0	NA	exonic	Grik2	synonymous SNV	"Grik2:NM_001111268:exon15:c.A2134C:p.R712R,Grik2:NM_001358866:exon15:c.A2134C:p.R712R,Grik2:NM_010349:exon15:c.A2134C:p.R712R"	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9823092	CTG	synonymous	CTG	8	CTGCTGCT	NA
M7	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	148	95	18	0.189473684	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	51621056	12A2p6	cell line	sgMsh2	51621056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	152	0	0	NA	exonic	Gprc6a	nonsynonymous SNV	Gprc6a:NM_153071:exon4:c.T1390C:p.F464L	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999639	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	53021917	12A2p6	cell line	sgMsh2	53021917	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	101	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon3:c.A423C:p.E141D	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	53319635	12A2p6	cell line	sgMsh2	53319635	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.203	95	8	0	0	exonic	Cep85l	frameshift insertion	Cep85l:NM_001204983:exon4:c.1104dupA:p.E369Rfs*11	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.925342822	NA	NA	TCT	frameshift	NA	NA	NA	1
M7	chr10	53319685	12A2p6	cell line	sgMsh2	53319685	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	96	6	1	0.166666667	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon4:c.C1055A:p.P352H	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	57512133	12A2p6	cell line	sgMsh2	57512133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	121	92	21	0.22826087	exonic	Hsf2	nonsynonymous SNV	Hsf2:NM_008297:exon12:c.C1489T:p.L497F	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9990344	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr10	57512156	12A2p6	cell line	sgMsh2	57512156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	117	96	24	0.25	exonic	Hsf2	synonymous SNV	Hsf2:NM_008297:exon12:c.T1512C:p.A504A	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9693369	CTC	synonymous	NA	NA	NA	NA
M7	chr10	57807508	12A2p6	cell line	sgMsh2	57807508	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	140	37	0	0	exonic	Smpdl3a	nonsynonymous SNV	Smpdl3a:NM_020561:exon5:c.T713C:p.L238P	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.173216883	3	1.08E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	58476919	12A2p6	cell line	sgMsh2	58476919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	197	153	40	0.261437908	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.A3460G:p.S1154G	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999972	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	59049580	12A2p6	cell line	sgMsh2	59049580	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	45	0	0	NA	exonic	Sh3rf3	nonsynonymous SNV	Sh3rf3:NM_172788:exon4:c.G1284T:p.Q428H	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.683750854	2	0.5121092	AGG	nonsynonymous	CCCA	8	CCCACCCA	NA
M7	chr10	60773801	12A2p6	cell line	sgMsh2	60773801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	66	149	37	0.248322148	exonic	Unc5b	nonsynonymous SNV	"Unc5b:NM_001359273:exon10:c.T1682G:p.I561S,Unc5b:NM_029770:exon11:c.T1715G:p.I572S"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9952797	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	61348575	12A2p6	cell line	sgMsh2	61348575	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	64	15	3	0.2	exonic	Pald1	synonymous SNV	"Pald1:NM_001372378:exon6:c.G762A:p.E254E,Pald1:NM_013753:exon6:c.G762A:p.E254E"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8294643	CCT	synonymous	NA	NA	NA	NA
M7	chr10	62252883	12A2p6	cell line	sgMsh2	62252883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	49	0	0	NA	exonic	Tacr2	synonymous SNV	Tacr2:NM_009314:exon1:c.C66T:p.G22G	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8564188	GCG	synonymous	NA	NA	NA	NA
M7	chr10	62563277	12A2p6	cell line	sgMsh2	62563277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	153	67	15	0.223880597	exonic	Kifbp	nonsynonymous SNV	Kifbp:NM_028197:exon6:c.T937C:p.Y313H	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9990022	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	63246002	12A2p6	cell line	sgMsh2	63246002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	95	84	19	0.226190476	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_001359484:exon3:c.A103G:p.K35E,Herc4:NM_026101:exon3:c.A103G:p.K35E,Herc4:NM_030114:exon3:c.A103G:p.K35E"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr10	67021863	12A2p6	cell line	sgMsh2	67021863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	93	121	33	0.272727273	exonic	Reep3	nonsynonymous SNV	"Reep3:NM_001204915:exon6:c.A448G:p.S150G,Reep3:NM_178606:exon6:c.A448G:p.S150G"	10qB5.1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	67219678	12A2p6	cell line	sgMsh2	67219678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	171	56	11	0.196428571	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1194C:p.N398N,Jmjd1c:NM_207221:exon8:c.T1737C:p.N579N"	10qB5.1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7462877	ATG	synonymous	NA	NA	NA	NA
M7	chr10	68098650	12A2p6	cell line	sgMsh2	68098651	TT	CC	DBS	Mutect2;Vardict	2	0.12	63	60	7	0.116666667	exonic	Arid5b	nonframeshift substitution	Arid5b:NM_023598:exon10:c.1420_1421GG:p.K474G	10qB5.2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.547000683	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	69340868	12A2p6	cell line	sgMsh2	69340868	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	73	364	82	0.225274725	exonic	Cdk1	nonsynonymous SNV	Cdk1:NM_007659:exon6:c.T500C:p.L167P	10qB5.3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.9968218	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	69808417	12A2p6	cell line	sgMsh2	69808417	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	168	26	6	0.230769231	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon2:c.C65T:p.S22F,Ank3:NM_170688:exon2:c.C65T:p.S22F,Ank3:NM_170689:exon2:c.C65T:p.S22F,Ank3:NM_170690:exon2:c.C65T:p.S22F,Ank3:NM_170728:exon2:c.C65T:p.S22F,Ank3:NM_170729:exon2:c.C65T:p.S22F"	10qB5.3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999854	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	75263363	12A2p6	cell line	sgMsh2	75263363	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	114	65	14	0.215384615	exonic	Specc1l	nonsynonymous SNV	"Specc1l:NM_153406:exon9:c.C2648A:p.P883H,Specc1l:NM_001145826:exon12:c.C2699A:p.P900H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9991707	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	75585276	12A2p6	cell line	sgMsh2	75585276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	84	0	0	NA	exonic	Ggt1	nonsynonymous SNV	"Ggt1:NM_008116:exon10:c.A1324G:p.I442V,Ggt1:NM_001305992:exon11:c.A1324G:p.I442V,Ggt1:NM_001379540:exon11:c.A1324G:p.I442V,Ggt1:NM_001379541:exon11:c.A1324G:p.I442V,Ggt1:NM_001379537:exon12:c.A1324G:p.I442V,Ggt1:NM_001379538:exon12:c.A1324G:p.I442V,Ggt1:NM_001379539:exon12:c.A1324G:p.I442V"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	75954626	12A2p6	cell line	sgMsh2	75954626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	52	0	0	NA	exonic	Gm5134	synonymous SNV	Gm5134:NM_198635:exon1:c.T55C:p.L19L	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CTT	synonymous	NA	NA	NA	NA
M7	chr10	76357079	12A2p6	cell line	sgMsh2	76357079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	143	47	9	0.191489362	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon37:c.C8035T:p.H2679Y,Pcnt:NM_008787:exon37:c.C8089T:p.H2697Y"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr10	76389176	12A2p6	cell line	sgMsh2	76389176	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	105	25	7	0.28	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon25:c.T5493A:p.S1831R,Pcnt:NM_008787:exon25:c.T5493A:p.S1831R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9987217	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	76504413	12A2p6	cell line	sgMsh2	76504413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	55	42	7	0.166666667	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon22:c.T4517C:p.V1506A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	77065287	12A2p6	cell line	sgMsh2	77065287	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	63	461	5	0.010845987	exonic	Col18a1	frameshift deletion	"Col18a1:NM_001109991:exon29:c.3092delC:p.P1031Lfs*65,Col18a1:NM_009929:exon30:c.2456delC:p.P819Lfs*65"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7	chr10	77096292	12A2p6	cell line	sgMsh2	77096292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	63	225	72	0.32	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T962C:p.V321A,Col18a1:NM_009929:exon3:c.T326C:p.V109A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	77096319	12A2p6	cell line	sgMsh2	77096319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	64	222	74	0.333333333	exonic	Col18a1	nonsynonymous SNV	"Col18a1:NM_001109991:exon2:c.T935C:p.L312P,Col18a1:NM_009929:exon3:c.T299C:p.L100P"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9947155	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	77548693	12A2p6	cell line	sgMsh2	77548693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	81	0	0	NA	exonic	Itgb2	nonsynonymous SNV	Itgb2:NM_008404:exon6:c.A647G:p.Q216R	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	78071997	12A2p6	cell line	sgMsh2	78071997	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	155	1	0	0	exonic	Icosl	synonymous SNV	Icosl:NM_015790:exon3:c.T390A:p.P130P	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.660959158	2	0.9941738	CTC	synonymous	NA	NA	NA	NA
M7	chr10	78752673	12A2p6	cell line	sgMsh2	78752673	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	34	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon1:c.A302T:p.K101M	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9624372	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	78801882	12A2p6	cell line	sgMsh2	78801882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	85	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.C1241A:p.P414H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9311679	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	79377807	12A2p6	cell line	sgMsh2	79377807	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	254	0	0	NA	exonic	Vmn2r82	stopgain	Vmn2r82:NM_001101572:exon2:c.C226T:p.R76X	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9999973	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr10	79542433	12A2p6	cell line	sgMsh2	79542433	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	86	58	17	0.293103448	exonic	Mier2	synonymous SNV	"Mier2:NM_001316699:exon12:c.G1155A:p.R385R,Mier2:NM_027422:exon12:c.G1149A:p.R383R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	GCC	synonymous	NA	NA	NA	NA
M7	chr10	79669539	12A2p6	cell line	sgMsh2	79669539	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	27	23	8	0.347826087	exonic	Tpgs1	nonsynonymous SNV	Tpgs1:NM_148934:exon1:c.G94A:p.A32T	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr10	79675488	12A2p6	cell line	sgMsh2	79675488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	62	43	6	0.139534884	exonic	Tpgs1	nonsynonymous SNV	Tpgs1:NM_148934:exon2:c.T427C:p.Y143H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9940844	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	79900192	12A2p6	cell line	sgMsh2	79900192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	52	29	8	0.275862069	exonic	Med16	nonsynonymous SNV	"Med16:NM_001163276:exon7:c.A1118G:p.D373G,Med16:NM_001359629:exon7:c.A1121G:p.D374G,Med16:NM_198107:exon7:c.A1121G:p.D374G"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9700851	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	79997840	12A2p6	cell line	sgMsh2	79997840	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	47	23	3	0.130434783	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon3:c.138delC:p.P48Lfs*29,Abca7:NM_013850:exon3:c.138delC:p.P48Lfs*29"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.688309193	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr10	80024846	12A2p6	cell line	sgMsh2	80024846	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	43	105	16	0.152380952	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon10:c.A1018T:p.N340Y,Arhgap45:NM_001142701:exon11:c.A1366T:p.N456Y,Arhgap45:NM_001347074:exon11:c.A1399T:p.N467Y"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9828142	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr10	80028669	12A2p6	cell line	sgMsh2	80028669	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	38	83	21	0.253012048	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.C2173T:p.L725F,Arhgap45:NM_001142701:exon20:c.C2521T:p.L841F,Arhgap45:NM_001347074:exon20:c.C2554T:p.L852F"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9773057	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	80060204	12A2p6	cell line	sgMsh2	80060204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	105	60	13	0.216666667	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon25:c.A2827T:p.S943C,Sbno2:NM_183426:exon25:c.A2827T:p.S943C"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9954458	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	80127972	12A2p6	cell line	sgMsh2	80127972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	90	187	37	0.197860963	exonic	Stk11	nonsynonymous SNV	"Stk11:NM_001301853:exon8:c.A989G:p.D330G,Stk11:NM_001301854:exon8:c.A617G:p.D206G,Stk11:NM_011492:exon8:c.A989G:p.D330G"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	80293842	12A2p6	cell line	sgMsh2	80293842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	116	3156	607	0.192332066	exonic	Rps15	nonsynonymous SNV	"Rps15:NM_001310726:exon3:c.A209G:p.Y70C,Rps15:NM_009091:exon3:c.A290G:p.Y97C"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9770336	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	80314580	12A2p6	cell line	sgMsh2	80314580	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	110	8	0	0	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5380G:p.T1794A,Apc2:NM_001372237:exon15:c.A5467G:p.T1823A,Apc2:NM_001372238:exon15:c.A5470G:p.T1824A,Apc2:NM_001372239:exon15:c.A5395G:p.T1799A,Apc2:NM_001372240:exon15:c.A5509G:p.T1837A,Apc2:NM_001372241:exon15:c.A5506G:p.T1836A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.1868919	3	4.95E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	80314629	12A2p6	cell line	sgMsh2	80314629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	91	5	3	0.6	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.G5429A:p.R1810H,Apc2:NM_001372237:exon15:c.G5516A:p.R1839H,Apc2:NM_001372238:exon15:c.G5519A:p.R1840H,Apc2:NM_001372239:exon15:c.G5444A:p.R1815H,Apc2:NM_001372240:exon15:c.G5558A:p.R1853H,Apc2:NM_001372241:exon15:c.G5555A:p.R1852H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.998853	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr10	80520339	12A2p6	cell line	sgMsh2	80520339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	126	0	0	NA	exonic	Atp8b3	nonsynonymous SNV	Atp8b3:NM_026094:exon28:c.A3538G:p.I1180V	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9993462	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr10	80544051	12A2p6	cell line	sgMsh2	80544051	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	70	44	12	0.272727273	exonic	Rexo1	nonsynonymous SNV	Rexo1:NM_025852:exon10:c.C2944T:p.R982C	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9909257	CGC	nonsynonymous	CGCA	8	CGCACGCA	NA
M7	chr10	80639826	12A2p6	cell line	sgMsh2	80639826	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	62	298	59	0.197986577	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_134002:exon10:c.A1226C:p.N409T,Csnk1g2:NM_001159591:exon11:c.A1145C:p.N382T"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9940844	AAC	nonsynonymous	C	5	CCCCC	NA
M7	chr10	80730907	12A2p6	cell line	sgMsh2	80730907	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	75	12	0.16	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon3:c.T240G:p.I80M	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9995864	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr10	80789091	12A2p6	cell line	sgMsh2	80789091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	31	18	3	0.166666667	exonic	Dot1l	nonsynonymous SNV	Dot1l:NM_199322:exon24:c.T3392C:p.M1131T	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.966611	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr10	80804747	12A2p6	cell line	sgMsh2	80804747	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	7	22	4	0.181818182	exonic	Sf3a2	nonsynonymous SNV	Sf3a2:NM_013651:exon9:c.C1391T:p.P464L	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.8801471	CCC	nonsynonymous	C	5	CCCCC	NA
M7	chr10	80863088	12A2p6	cell line	sgMsh2	80863088	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	115	27	0	0	exonic	Sppl2b	nonsynonymous SNV	"Sppl2b:NM_001358803:exon5:c.T575C:p.V192A,Sppl2b:NM_175195:exon5:c.T575C:p.V192A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.214241934	3	0.9999997	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81081397	12A2p6	cell line	sgMsh2	81081397	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	67	104	24	0.230769231	exonic	Thop1	nonsynonymous SNV	Thop1:NM_022653:exon11:c.G1733A:p.R578Q	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81118183	12A2p6	cell line	sgMsh2	81118183	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	129	141	32	0.226950355	exonic	Map2k2	nonsynonymous SNV	"Map2k2:NM_001347144:exon4:c.A482C:p.E161A,Map2k2:NM_023138:exon4:c.A482C:p.E161A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.7993888	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81144148	12A2p6	cell line	sgMsh2	81144148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	97	81	20	0.24691358	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T175C:p.F59L	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9829286	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	81144365	12A2p6	cell line	sgMsh2	81144365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	79	55	19	0.345454545	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T392A:p.I131N	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr10	81157349	12A2p6	cell line	sgMsh2	81157349	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.08	98	61	8	0.131147541	exonic	Pias4	nonsynonymous SNV	Pias4:NM_021501:exon6:c.T658C:p.Y220H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.364667122	2	6.62E-06	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81274038	12A2p6	cell line	sgMsh2	81274038	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.136	31	6	0	0	exonic	Tjp3	nonsynonymous SNV	"Tjp3:NM_001282095:exon19:c.C2330T:p.P777L,Tjp3:NM_001282096:exon19:c.C2357T:p.P786L,Tjp3:NM_013769:exon19:c.C2330T:p.P777L"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.619934107	2	0.5293979	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81509305	12A2p6	cell line	sgMsh2	81509305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	107	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T725C:p.L242P	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	81588933	12A2p6	cell line	sgMsh2	81588933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	60	11	1	0.090909091	exonic	Tle2	nonsynonymous SNV	"Tle2:NM_001252401:exon18:c.T1988C:p.V663A,Tle2:NM_019725:exon18:c.T2093C:p.V698A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	82644682	12A2p6	cell line	sgMsh2	82644682	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	181	4	0	0	exonic	Tdg	nonsynonymous SNV	"Tdg:NM_001358517:exon7:c.A798C:p.Q266H,Tdg:NM_011561:exon7:c.A726C:p.Q242H,Tdg:NM_172552:exon7:c.A798C:p.Q266H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.999993	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	83191774	12A2p6	cell line	sgMsh2	83191774	T	C	SNV	Mutect2;MuSe;Vardict	3	0.245	44	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon3:c.T1034C:p.V345A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9837467	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	86467153	12A2p6	cell line	sgMsh2	86467153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	76	4	0	0	exonic	Syn3	nonsynonymous SNV	"Syn3:NM_001164495:exon2:c.A137G:p.Q46R,Syn3:NM_013722:exon2:c.A137G:p.Q46R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.65184248	2	0.8705589	CTG	nonsynonymous	G	5	GGGGG	NA
M7	chr10	86934874	12A2p6	cell line	sgMsh2	86934874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	142	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon24:c.A2644G:p.T882A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9991772	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	88758365	12A2p6	cell line	sgMsh2	88758365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	86	41	4	0.097560976	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon49:c.A6497T:p.N2166I	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9873246	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	89805342	12A2p6	cell line	sgMsh2	89805342	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	217	111	7	0.063063063	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.2374delT:p.L793fs*0	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr10	91001014	12A2p6	cell line	sgMsh2	91001014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	80	62	17	0.274193548	exonic	Apaf1	nonsynonymous SNV	"Apaf1:NM_001042558:exon23:c.T3200C:p.V1067A,Apaf1:NM_001282947:exon23:c.T3167C:p.V1056A,Apaf1:NM_009684:exon23:c.T3200C:p.V1067A"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.9978612	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	91119546	12A2p6	cell line	sgMsh2	91119546	T	C	SNV	Mutect2;MuSe;Vardict	3	0.126	99	1642	0	0	exonic	Slc25a3	nonsynonymous SNV	Slc25a3:NM_133668:exon4:c.A428G:p.Y143C	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.574350717	2	0.9947149	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	93472948	12A2p6	cell line	sgMsh2	93472948	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	79	146	2	0.01369863	exonic	Lta4h	nonsynonymous SNV	"Lta4h:NM_001313897:exon12:c.T1109C:p.L370P,Lta4h:NM_008517:exon12:c.T1109C:p.L370P"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.246150307	3	0.9996101	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	93516261	12A2p6	cell line	sgMsh2	93516261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	157	4	2	0.5	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon20:c.C1913T:p.A638V	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999728	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr10	93534607	12A2p6	cell line	sgMsh2	93534607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	51	0	0	NA	exonic	Amdhd1	nonsynonymous SNV	Amdhd1:NM_027908:exon4:c.T368C:p.V123A	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9890151	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	93974002	12A2p6	cell line	sgMsh2	93974002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	49	64	14	0.21875	exonic	Vezt	nonsynonymous SNV	"Vezt:NM_001304572:exon11:c.A1664T:p.E555V,Vezt:NM_001304575:exon11:c.A1676T:p.E559V,Vezt:NM_001304720:exon11:c.A1664T:p.E555V,Vezt:NM_172538:exon11:c.A1664T:p.E555V"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9877115	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	93996912	12A2p6	cell line	sgMsh2	93996912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	67	74	11	0.148648649	exonic	Vezt	synonymous SNV	"Vezt:NM_001304572:exon5:c.A636G:p.R212R,Vezt:NM_001304575:exon5:c.A636G:p.R212R,Vezt:NM_001304720:exon5:c.A636G:p.R212R,Vezt:NM_172538:exon5:c.A636G:p.R212R"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.7022783	CTC	synonymous	NA	NA	NA	NA
M7	chr10	94195270	12A2p6	cell line	sgMsh2	94195270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	86	47	14	0.29787234	exonic	Nr2c1	synonymous SNV	Nr2c1:NM_011629:exon14:c.A1692G:p.V564V	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	TAC	synonymous	NA	NA	NA	NA
M7	chr10	94852685	12A2p6	cell line	sgMsh2	94852685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	135	0	0	NA	exonic	Plxnc1	nonsynonymous SNV	Plxnc1:NM_018797:exon10:c.T2030C:p.L677S	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999054	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr10	96011018	12A2p6	cell line	sgMsh2	96011018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	46	69	14	0.202898551	exonic	Eea1	nonsynonymous SNV	Eea1:NM_001001932:exon11:c.A1159G:p.T387A	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9854647	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	102388635	12A2p6	cell line	sgMsh2	102388635	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	209	0	0	NA	exonic	Mgat4c	nonsynonymous SNV	"Mgat4c:NM_026243:exon4:c.A709T:p.I237F,Mgat4c:NM_001162368:exon6:c.A709T:p.I237F,Mgat4c:NM_001162369:exon6:c.A709T:p.I237F,Mgat4c:NM_001205098:exon8:c.A709T:p.I237F"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999986	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr10	103393986	12A2p6	cell line	sgMsh2	103393986	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	123	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon4:c.C533A:p.P178H,Slc6a15:NM_001358821:exon4:c.C533A:p.P178H,Slc6a15:NM_175328:exon5:c.C533A:p.P178H"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.6060711	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	103395155	12A2p6	cell line	sgMsh2	103395155	T	G	SNV	Mutect2;Vardict	2	0.036	130	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon5:c.T740G:p.I247S,Slc6a15:NM_001358821:exon5:c.T740G:p.I247S,Slc6a15:NM_175328:exon6:c.T740G:p.I247S"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1.15E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr10	103404331	12A2p6	cell line	sgMsh2	103404331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	161	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon7:c.A914G:p.Q305R,Slc6a15:NM_001358821:exon7:c.A914G:p.Q305R,Slc6a15:NM_175328:exon8:c.A914G:p.Q305R"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9918298	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	105413620	12A2p6	cell line	sgMsh2	105413620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	13	0	0	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C251A:p.P84H	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr10	105763431	12A2p6	cell line	sgMsh2	105763431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	87	4	2	0.5	exonic	Mettl25	synonymous SNV	"Mettl25:NM_207522:exon12:c.T1732C:p.L578L,Mettl25:NM_001359640:exon13:c.T1297C:p.L433L,Mettl25:NM_001359642:exon13:c.T1297C:p.L433L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	AAC	synonymous	NA	NA	NA	NA
M7	chr10	105826163	12A2p6	cell line	sgMsh2	105826163	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	157	11	0	0	exonic	Mettl25	synonymous SNV	"Mettl25:NM_207522:exon4:c.T945C:p.D315D,Mettl25:NM_001359640:exon5:c.T510C:p.D170D,Mettl25:NM_001359642:exon5:c.T510C:p.D170D"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.154983527	3	1.00E-09	CAT	synonymous	NA	NA	NA	NA
M7	chr10	106893435	12A2p6	cell line	sgMsh2	106893435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	109	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359683:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359684:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359685:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359690:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359691:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359692:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359694:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359695:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359697:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359698:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359677:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359678:exon21:c.T2442C:p.H814H,Ppfia2:NM_001359680:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359681:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359682:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359686:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359687:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359688:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359689:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359693:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359696:exon21:c.T2430C:p.H810H,Ppfia2:NM_001205341:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359672:exon22:c.T2655C:p.H885H,Ppfia2:NM_001359673:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359674:exon22:c.T2643C:p.H881H,Ppfia2:NM_001359675:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359676:exon22:c.T2643C:p.H881H,Ppfia2:NM_177373:exon22:c.T2643C:p.H881H"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.6308189	ATG	synonymous	NA	NA	NA	NA
M7	chr10	106896447	12A2p6	cell line	sgMsh2	106896447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	59	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359683:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359684:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359685:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359690:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359691:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359692:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359694:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359695:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359697:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359698:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359677:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359678:exon22:c.T2650C:p.L884L,Ppfia2:NM_001359680:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359681:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359682:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359686:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359687:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359688:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359689:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359693:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359696:exon22:c.T2638C:p.L880L,Ppfia2:NM_001205341:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359672:exon23:c.T2863C:p.L955L,Ppfia2:NM_001359673:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359674:exon23:c.T2851C:p.L951L,Ppfia2:NM_001359675:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359676:exon23:c.T2851C:p.L951L,Ppfia2:NM_177373:exon23:c.T2851C:p.L951L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	CTT	synonymous	NA	NA	NA	NA
M7	chr10	107575960	12A2p6	cell line	sgMsh2	107575960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	236	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon32:c.T5544C:p.D1848D,Ptprq:NM_001370987:exon32:c.T5547C:p.D1849D"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9996206	TAT	synonymous	NA	NA	NA	NA
M7	chr10	109751457	12A2p6	cell line	sgMsh2	109751457	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	132	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon20:c.C4667A:p.S1556Y,Nav3:NM_001368815:exon20:c.C4667A:p.S1556Y"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr10	110782288	12A2p6	cell line	sgMsh2	110782288	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	60	7	4	0.571428571	exonic	E2f7	nonsynonymous SNV	"E2f7:NM_001358560:exon12:c.C2213T:p.P738L,E2f7:NM_178609:exon12:c.C2213T:p.P738L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	112211131	12A2p6	cell line	sgMsh2	112211131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	229	0	0	NA	exonic	Caps2	nonsynonymous SNV	"Caps2:NM_178278:exon16:c.T1541G:p.I514S,Caps2:NM_001310675:exon17:c.T1415G:p.I472S"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999995	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr10	112456180	12A2p6	cell line	sgMsh2	112456180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	54	0	0	NA	exonic	Kcnc2	synonymous SNV	"Kcnc2:NM_001025581:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359752:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359753:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379643:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379644:exon3:c.G1272A:p.Q424Q"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9907182	AGT	synonymous	NA	NA	NA	NA
M7	chr10	112461980	12A2p6	cell line	sgMsh2	112461980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	106	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	Kcnc2:NM_001025581:exon5:c.C1808A:p.P603H	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	114412475	12A2p6	cell line	sgMsh2	114412475	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	138	0	0	NA	exonic	Trhde	nonsynonymous SNV	Trhde:NM_146241:exon17:c.T2941G:p.F981V	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.214241934	3	1.48E-08	AAC	nonsynonymous	A	5	AAAAA	NA
M7	chr10	115229164	12A2p6	cell line	sgMsh2	115229164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	76	215	50	0.23255814	exonic	Tbc1d15	nonsynonymous SNV	Tbc1d15:NM_025706:exon5:c.T515C:p.L172P	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.5101226	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	117074208	12A2p6	cell line	sgMsh2	117074208	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.201	203	58	11	0.189655172	exonic	Frs2	synonymous SNV	Frs2:NM_177798:exon10:c.A1248T:p.T416T	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9996949	GTG	synonymous	NA	NA	NA	NA
M7	chr10	117074210	12A2p6	cell line	sgMsh2	117074210	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.201	203	55	11	0.2	exonic	Frs2	nonsynonymous SNV	Frs2:NM_177798:exon10:c.A1246G:p.T416A	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9996949	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	117362129	12A2p6	cell line	sgMsh2	117362129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	139	23	0.165467626	exonic	Cpsf6	synonymous SNV	"Cpsf6:NM_001013391:exon5:c.A579C:p.S193S,Cpsf6:NM_001310609:exon5:c.A579C:p.S193S"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9807891	GTG	synonymous	NA	NA	NA	NA
M7	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	121	2	0	0	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.979018	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	118294131	12A2p6	cell line	sgMsh2	118294131	T	A	SNV	Mutect2;Vardict	2	0.039	168	0	0	NA	exonic	Iltifb	nonsynonymous SNV	Iltifb:NM_054079:exon3:c.A367T:p.T123S	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.177775222	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	119212091	12A2p6	cell line	sgMsh2	119212091	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	117	205	38	0.185365854	exonic	Cand1	nonsynonymous SNV	Cand1:NM_027994:exon10:c.T1493G:p.L498R	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9952556	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	120102859	12A2p6	cell line	sgMsh2	120102859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	110	12	4	0.333333333	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon5:c.A1709G:p.D570G	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	120925957	12A2p6	cell line	sgMsh2	120925957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	143	36	12	0.333333333	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon11:c.C2492T:p.A831V	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr10	121553926	12A2p6	cell line	sgMsh2	121553926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	91	68	13	0.191176471	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon14:c.A1620G:p.E540E	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.998642	CTT	synonymous	NA	NA	NA	NA
M7	chr10	121792770	12A2p6	cell line	sgMsh2	121792770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	82	31	11	0.35483871	exonic	Srgap1	nonsynonymous SNV	"Srgap1:NM_001081037:exon20:c.A2425G:p.T809A,Srgap1:NM_001242411:exon20:c.A2356G:p.T786A"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	123006072	12A2p6	cell line	sgMsh2	123006072	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	146	118	23	0.194915254	exonic	Mon2	nonsynonymous SNV	"Mon2:NM_001163025:exon31:c.G4615T:p.G1539C,Mon2:NM_153395:exon31:c.G4612T:p.G1538C,Mon2:NM_001163024:exon32:c.G4633T:p.G1545C"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	123163632	12A2p6	cell line	sgMsh2	123163632	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	156	94	1	0.010638298	exonic	Usp15	frameshift deletion	"Usp15:NM_001301628:exon6:c.644delA:p.N215Mfs*14,Usp15:NM_027604:exon6:c.644delA:p.N215Mfs*43"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.948134517	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr10	125230903	12A2p6	cell line	sgMsh2	125230903	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	129	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon5:c.C866T:p.A289V,Slc16a7:NM_001358915:exon5:c.C866T:p.A289V,Slc16a7:NM_011391:exon6:c.C866T:p.A289V"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9988569	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr10	125294803	12A2p6	cell line	sgMsh2	125294803	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	113	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon3:c.G12T:p.E4D,Slc16a7:NM_001358915:exon3:c.G12T:p.E4D,Slc16a7:NM_011391:exon4:c.G12T:p.E4D"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	48	15	0	0	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	CCG	synonymous	NA	NA	NA	NA
M7	chr10	127041992	12A2p6	cell line	sgMsh2	127041992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	33	19	4	0.210526316	exonic	Mettl1	nonsynonymous SNV	Mettl1:NM_010792:exon1:c.C14A:p.A5D	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9623049	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr10	127169983	12A2p6	cell line	sgMsh2	127169983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	102	96	13	0.135416667	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon6:c.T826C:p.Y276H,B4galnt1:NM_001358577:exon7:c.T718C:p.Y240H,B4galnt1:NM_027739:exon7:c.T925C:p.Y309H,B4galnt1:NM_008080:exon8:c.T817C:p.Y273H"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	127171079	12A2p6	cell line	sgMsh2	127171079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	50	47	9	0.191489362	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon8:c.T1313C:p.V438A,B4galnt1:NM_001358577:exon9:c.T1205C:p.V402A,B4galnt1:NM_027739:exon9:c.T1412C:p.V471A,B4galnt1:NM_008080:exon10:c.T1304C:p.V435A"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9883813	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	127233921	12A2p6	cell line	sgMsh2	127233921	T	A	SNV	Mutect2;Vardict	2	0.032	167	0	0	NA	exonic	Kif5a	nonsynonymous SNV	"Kif5a:NM_001039000:exon23:c.A2434T:p.S812C,Kif5a:NM_008447:exon23:c.A2434T:p.S812C"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.145866849	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	127308565	12A2p6	cell line	sgMsh2	127308565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	43	121	37	0.305785124	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon6:c.T605C:p.L202P,Mars1:NM_001171582:exon6:c.T605C:p.L202P"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9828142	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	127444363	12A2p6	cell line	sgMsh2	127444363	A	-	Deletion	Strelka2;Vardict	2	0.275	40	87	9	0.103448276	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359243:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359245:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359246:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_027900:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001168292:exon3:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359244:exon4:c.53delA:p.K20Nfs*6"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M7	chr10	127518121	12A2p6	cell line	sgMsh2	127518121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	155	163	35	0.214723926	exonic	Shmt2	nonsynonymous SNV	"Shmt2:NM_001252316:exon11:c.T1282G:p.L428V,Shmt2:NM_028230:exon11:c.T1291G:p.L431V"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	127553800	12A2p6	cell line	sgMsh2	127553800	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	41	45	8	0.177777778	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon59:c.A9365T:p.K3122M	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	2	1	1	0.9807891	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	127557203	12A2p6	cell line	sgMsh2	127557203	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	52	31	8	0.258064516	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon50:c.A8185T:p.T2729S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr10	127898691	12A2p6	cell line	sgMsh2	127898691	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	114	0	0	NA	exonic	Sdr9c7	nonsynonymous SNV	Sdr9c7:NM_027301:exon1:c.A47T:p.N16I	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9996152	AAT	nonsynonymous	A	5	AAAAA	NA
M7	chr10	128048308	12A2p6	cell line	sgMsh2	128048308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	798	168	0.210526316	exonic	Naca	nonsynonymous SNV	"Naca:NM_001282976:exon7:c.A574G:p.R192G,Naca:NM_013608:exon7:c.A574G:p.R192G,Naca:NM_001113199:exon8:c.A6490G:p.R2164G"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr10	128209424	12A2p6	cell line	sgMsh2	128209424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	39	18	4	0.222222222	exonic	Gls2	nonsynonymous SNV	"Gls2:NM_001285777:exon17:c.A1222G:p.N408D,Gls2:NM_001033264:exon18:c.A1789G:p.N597D,Gls2:NM_001285779:exon18:c.A994G:p.N332D"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9267549	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr10	128211121	12A2p6	cell line	sgMsh2	128211121	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	134	26	4	0.153846154	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.A356C:p.D119A	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr10	128225892	12A2p6	cell line	sgMsh2	128225892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	84	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T11A:p.L4H	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.70198421	2	0.7369541	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	128225954	12A2p6	cell line	sgMsh2	128225954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T73C:p.F25L	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9934535	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr10	128277668	12A2p6	cell line	sgMsh2	128277668	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	102	26	3	0.115384615	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon5:c.G403T:p.A135S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr10	128389817	12A2p6	cell line	sgMsh2	128389817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	223	53	11	0.20754717	exonic	Ankrd52	synonymous SNV	Ankrd52:NM_172790:exon26:c.T2853C:p.L951L	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999994	TTG	synonymous	NA	NA	NA	NA
M7	chr10	128571459	12A2p6	cell line	sgMsh2	128571459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	157	32	5	0.15625	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon24:c.A2918G:p.Y973C	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999728	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr10	129160683	12A2p6	cell line	sgMsh2	129160683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	204	0	0	NA	exonic	Olfr771	frameshift deletion	Olfr771:NM_146547:exon1:c.300delT:p.F100Lfs*6	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr10	129238369	12A2p6	cell line	sgMsh2	129238369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	352	0	0	NA	exonic	Olfr774	synonymous SNV	Olfr774:NM_207620:exon1:c.T219C:p.S73S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	1.43E-09	GTG	synonymous	NA	NA	NA	NA
M7	chr10	129462699	12A2p6	cell line	sgMsh2	129462699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	234	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.A22G:p.T8A	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9998867	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr10	129463208	12A2p6	cell line	sgMsh2	129463208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	270	0	0	NA	exonic	Olfr787	stopgain	Olfr787:NM_001011822:exon1:c.T531A:p.C177X	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.9828538	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr10	129463212	12A2p6	cell line	sgMsh2	129463212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	264	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.T535C:p.Y179H	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9743835	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr10	129625424	12A2p6	cell line	sgMsh2	129625424	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	259	0	0	NA	exonic	Olfr798	synonymous SNV	Olfr798:NM_146556:exon1:c.A636G:p.V212V	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	TTA	synonymous	NA	NA	NA	NA
M7	chr10	129648033	12A2p6	cell line	sgMsh2	129648033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	80	0	0	NA	exonic	Olfr799	nonsynonymous SNV	Olfr799:NM_146927:exon1:c.A904G:p.I302V	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	AAT	nonsynonymous	A	5	AAAAA	NA
M7	chr10	129791191	12A2p6	cell line	sgMsh2	129791191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	266	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A397G:p.I133V	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr10	129801679	12A2p6	cell line	sgMsh2	129801679	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	333	0	0	NA	exonic	Olfr811	frameshift deletion	Olfr811:NM_146552:exon1:c.845delT:p.L282Cfs*1	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr10	129842231	12A2p6	cell line	sgMsh2	129842231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	329	0	0	NA	exonic	Olfr812	synonymous SNV	Olfr812:NM_146795:exon1:c.A810G:p.K270K	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	synonymous	TTTA	8	TTTATTTA	NA
M7	chr10	130163110	12A2p6	cell line	sgMsh2	130163110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	160	0	0	NA	exonic	Olfr825	nonsynonymous SNV	Olfr825:NM_146677:exon1:c.T215C:p.I72T	10qD3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	3156811	12A2p6	cell line	sgMsh2	3156811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	46	4	0	0	exonic	Sfi1	synonymous SNV	Sfi1:NM_030207:exon12:c.A1137G:p.Q379Q	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9854647	TTT	synonymous	NA	NA	NA	NA
M7	chr11	3333214	12A2p6	cell line	sgMsh2	3333214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	77	18	3	0.166666667	exonic	Pik3ip1	nonsynonymous SNV	Pik3ip1:NM_178149:exon4:c.A313G:p.T105A	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9899159	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	3419953	12A2p6	cell line	sgMsh2	3419953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	80	34	6	0.176470588	exonic	Rnf185	synonymous SNV	"Rnf185:NM_001290473:exon5:c.T249C:p.D83D,Rnf185:NM_001290472:exon6:c.T390C:p.D130D,Rnf185:NM_145355:exon7:c.T498C:p.D166D"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	CAT	synonymous	NA	NA	NA	NA
M7	chr11	3675857	12A2p6	cell line	sgMsh2	3675857	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	164	101	23	0.227722772	exonic	Morc2a	synonymous SNV	"Morc2a:NM_001363202:exon7:c.T456G:p.A152A,Morc2a:NM_198162:exon7:c.T270G:p.A90A,Morc2a:NM_001159288:exon8:c.T456G:p.A152A"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9986777	CTC	synonymous	NA	NA	NA	NA
M7	chr11	3897432	12A2p6	cell line	sgMsh2	3897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	193	26	6	0.230769231	exonic	Dusp18	nonsynonymous SNV	Dusp18:NM_173745:exon2:c.A421G:p.I141V	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999965	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	3897452	12A2p6	cell line	sgMsh2	3897452	T	C	SNV	Mutect2;Vardict	2	0.03	181	35	1	0.028571429	exonic	Dusp18	synonymous SNV	Dusp18:NM_173745:exon2:c.T441C:p.F147F	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	TTT	synonymous	NA	NA	NA	NA
M7	chr11	4075508	12A2p6	cell line	sgMsh2	4075508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	87	0	0	NA	exonic	Sec14l3	nonsynonymous SNV	Sec14l3:NM_001029937:exon11:c.A1031G:p.N344S	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	4167705	12A2p6	cell line	sgMsh2	4167705	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	98	84	3	0.035714286	exonic	Sf3a1	frameshift deletion	Sf3a1:NM_026175:exon4:c.466delC:p.S158Pfs*8	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7	chr11	4683002	12A2p6	cell line	sgMsh2	4683002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	45	121	27	0.223140496	exonic	Ascc2	nonsynonymous SNV	"Ascc2:NM_001376980:exon19:c.A1832G:p.N611S,Ascc2:NM_029291:exon20:c.A2174G:p.N725S"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	5070073	12A2p6	cell line	sgMsh2	5070073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	82	400	78	0.195	exonic	Ewsr1	synonymous SNV	"Ewsr1:NM_001283062:exon15:c.G1848T:p.R616R,Ewsr1:NM_001362617:exon15:c.G1608T:p.R536R,Ewsr1:NM_001362616:exon16:c.G1866T:p.R622R,Ewsr1:NM_001362620:exon16:c.G945T:p.R315R,Ewsr1:NM_001283061:exon17:c.G1962T:p.R654R,Ewsr1:NM_007968:exon17:c.G1959T:p.R653R,Ewsr1:NM_001362612:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362613:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362614:exon18:c.G1977T:p.R659R,Ewsr1:NM_001362615:exon18:c.G1974T:p.R658R"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	GCC	synonymous	NA	NA	NA	NA
M7	chr11	5103222	12A2p6	cell line	sgMsh2	5103222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	70	21	6	0.285714286	exonic	Rhbdd3	synonymous SNV	"Rhbdd3:NM_001290493:exon4:c.T21A:p.P7P,Rhbdd3:NM_001290491:exon5:c.T21A:p.P7P,Rhbdd3:NM_001290492:exon5:c.T21A:p.P7P,Rhbdd3:NM_177370:exon5:c.T21A:p.P7P"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.724775905	2	0.5296909	CTG	synonymous	NA	NA	NA	NA
M7	chr11	5286136	12A2p6	cell line	sgMsh2	5286136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	10	3	0.3	exonic	Znrf3	synonymous SNV	"Znrf3:NM_001080924:exon6:c.A861G:p.T287T,Znrf3:NM_001290501:exon7:c.A573G:p.T191T"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9947155	ATG	synonymous	NA	NA	NA	NA
M7	chr11	6418301	12A2p6	cell line	sgMsh2	6418301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	83	12	2	0.166666667	exonic	Ppia	nonsynonymous SNV	Ppia:NM_008907:exon3:c.G176A:p.G59E	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr11	6601506	12A2p6	cell line	sgMsh2	6601506	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	78	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1684G:p.T562A	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.483183936	2	0.9969387	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	7130396	12A2p6	cell line	sgMsh2	7130396	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon5:c.A1138G:p.T380A	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	7198264	12A2p6	cell line	sgMsh2	7198264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	42	0	0	NA	exonic	Igfbp1	synonymous SNV	Igfbp1:NM_008341:exon1:c.T306G:p.G102G	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	GTC	synonymous	NA	NA	NA	NA
M7	chr11	9267519	12A2p6	cell line	sgMsh2	9267519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	110	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon9:c.T960C:p.D320D	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	ATG	synonymous	NA	NA	NA	NA
M7	chr11	9588391	12A2p6	cell line	sgMsh2	9588391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	127	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon55:c.T14173G:p.F4725V	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999851	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	11801717	12A2p6	cell line	sgMsh2	11801717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	150	50	12	0.24	exonic	Fignl1	nonsynonymous SNV	"Fignl1:NM_001163360:exon2:c.T1337C:p.I446T,Fignl1:NM_001163359:exon3:c.T1337C:p.I446T,Fignl1:NM_021891:exon3:c.T1337C:p.I446T"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9996707	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	12253400	12A2p6	cell line	sgMsh2	12253400	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	135	18	4	0.222222222	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.C3226T:p.L1076F,Cobl:NM_001282994:exon12:c.C3280T:p.L1094F,Cobl:NM_172496:exon12:c.C3301T:p.L1101F"	11qA1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9767438	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	16263013	12A2p6	cell line	sgMsh2	16263013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	138	0	0	NA	exonic	Vstm2a	nonsynonymous SNV	"Vstm2a:NM_001290539:exon4:c.A397G:p.N133D,Vstm2a:NM_001363461:exon4:c.A397G:p.N133D,Vstm2a:NM_145967:exon4:c.A397G:p.N133D"	11qA2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr11	16263042	12A2p6	cell line	sgMsh2	16263042	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	129	0	0	NA	exonic	Vstm2a	synonymous SNV	"Vstm2a:NM_001290539:exon4:c.C426A:p.A142A,Vstm2a:NM_001363461:exon4:c.C426A:p.A142A,Vstm2a:NM_145967:exon4:c.C426A:p.A142A"	11qA2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	CCC	synonymous	NA	NA	NA	NA
M7	chr11	20094390	12A2p6	cell line	sgMsh2	20094390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	133	652	141	0.216257669	exonic	Actr2	nonsynonymous SNV	"Actr2:NM_146243:exon3:c.A215G:p.Y72C,Actr2:NM_001362899:exon4:c.A230G:p.Y77C"	11qA3.1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9990259	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	23868035	12A2p6	cell line	sgMsh2	23868035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	103	40	7	0.175	exonic	Papolg	nonsynonymous SNV	Papolg:NM_172555:exon17:c.A1610G:p.D537G	11qA3.2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	23870296	12A2p6	cell line	sgMsh2	23870296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	125	41	10	0.243902439	exonic	Papolg	synonymous SNV	Papolg:NM_172555:exon15:c.T1293C:p.N431N	11qA3.2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998332	AAT	synonymous	NA	NA	NA	NA
M7	chr11	29825156	12A2p6	cell line	sgMsh2	29825156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	24	0	0	NA	exonic	Fem1al	synonymous SNV	Fem1al:NM_176829:exon1:c.T300C:p.R100R	11qA3.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9148161	TAC	synonymous	NA	NA	NA	NA
M7	chr11	30103305	12A2p6	cell line	sgMsh2	30103305	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	120	432	5	0.011574074	exonic	Sptbn1	nonsynonymous SNV	Sptbn1:NM_175836:exon33:c.A6773G:p.E2258G	11qA3.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.264383663	3	0.9999717	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	30143115	12A2p6	cell line	sgMsh2	30143115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	100	739	199	0.269282815	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon10:c.A1206G:p.I402M,Sptbn1:NM_175836:exon10:c.A1245G:p.I415M"	11qA3.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	30149994	12A2p6	cell line	sgMsh2	30149994	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	131	522	126	0.24137931	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon5:c.A544T:p.I182F,Sptbn1:NM_175836:exon5:c.A583T:p.I195F"	11qA3.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998813	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	31369736	12A2p6	cell line	sgMsh2	31369736	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	57	0	0	NA	exonic	Stc2	nonsynonymous SNV	Stc2:NM_011491:exon1:c.G127A:p.G43S	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9661608	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr11	31671559	12A2p6	cell line	sgMsh2	31671559	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	48	42	7	0.166666667	exonic	Bod1	nonsynonymous SNV	Bod1:NM_001024919:exon1:c.A143C:p.K48T	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9848744	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	32598830	12A2p6	cell line	sgMsh2	32598830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	98	26	4	0.153846154	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon9:c.A803G:p.N268S,Stk10:NM_001359178:exon9:c.A710G:p.N237S,Stk10:NM_009288:exon9:c.A1397G:p.N466S"	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	33567416	12A2p6	cell line	sgMsh2	33567416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	75	0	0	NA	exonic	Gabrp	synonymous SNV	Gabrp:NM_146017:exon5:c.T255C:p.T85T	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.706542549	2	0.6562336	TAG	synonymous	NA	NA	NA	NA
M7	chr11	34071108	12A2p6	cell line	sgMsh2	34071108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	121	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon7:c.G463A:p.A155T	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	34232876	12A2p6	cell line	sgMsh2	34232876	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	60	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon47:c.C4756A:p.H1586N	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr11	34402347	12A2p6	cell line	sgMsh2	34402347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	92	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.A388G:p.S130G	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9917977	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	34402779	12A2p6	cell line	sgMsh2	34402779	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	127	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.C820A:p.L274I	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999851	ACT	nonsynonymous	A	5	AAAAA	NA
M7	chr11	34688511	12A2p6	cell line	sgMsh2	34688511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	201	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2074G:p.F692V	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999978	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr11	35234893	12A2p6	cell line	sgMsh2	35234893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	208	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon4:c.C398T:p.P133L	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9992021	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr11	35808486	12A2p6	cell line	sgMsh2	35808486	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	130	106	32	0.301886792	exonic	Rars	nonsynonymous SNV	Rars:NM_025936:exon15:c.T1979A:p.M660K	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9973663	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	35869173	12A2p6	cell line	sgMsh2	35869173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	65	142	30	0.211267606	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon14:c.A2014G:p.K672E	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9950055	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	161	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999784	GTT	synonymous	NA	NA	NA	NA
M7	chr11	40710205	12A2p6	cell line	sgMsh2	40710205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	303	106	22	0.20754717	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1337G:p.N446S	11qA5	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9999997	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr11	40728505	12A2p6	cell line	sgMsh2	40728505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	70	50	13	0.26	exonic	Hmmr	synonymous SNV	Hmmr:NM_013552:exon3:c.G147A:p.E49E	11qA5	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9962344	ACT	synonymous	NA	NA	NA	NA
M7	chr11	42162557	12A2p6	cell line	sgMsh2	42162557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	215	1	0	0	exonic	Gabra1	synonymous SNV	"Gabra1:NM_001359035:exon4:c.T249C:p.D83D,Gabra1:NM_010250:exon4:c.T249C:p.D83D"	11qA5	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999999	TAT	synonymous	NA	NA	NA	NA
M7	chr11	42529453	12A2p6	cell line	sgMsh2	42529453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	203	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362647:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362649:exon5:c.A404G:p.Y135C,Gabrb2:NM_001362646:exon6:c.A500G:p.Y167C,Gabrb2:NM_008070:exon6:c.A500G:p.Y167C"	11qA5	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7271284	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	44869152	12A2p6	cell line	sgMsh2	44869152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	157	0	0	NA	exonic	Ebf1	synonymous SNV	"Ebf1:NM_001290709:exon7:c.A615G:p.P205P,Ebf1:NM_001290710:exon7:c.A615G:p.P205P,Ebf1:NM_001290711:exon7:c.A216G:p.P72P,Ebf1:NM_001362569:exon7:c.A519G:p.P173P,Ebf1:NM_001362571:exon7:c.A615G:p.P205P,Ebf1:NM_001362574:exon7:c.A615G:p.P205P,Ebf1:NM_001362576:exon7:c.A216G:p.P72P,Ebf1:NM_001362578:exon7:c.A216G:p.P72P,Ebf1:NM_007897:exon7:c.A615G:p.P205P,Ebf1:NM_001362575:exon8:c.A564G:p.P188P,Ebf1:NM_001362577:exon8:c.A216G:p.P72P,Ebf1:NM_001362579:exon8:c.A216G:p.P72P"	11qB1.1	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999152	CAC	synonymous	NA	NA	NA	NA
M7	chr11	48889131	12A2p6	cell line	sgMsh2	48889131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	526	1	0	0	exonic	Gm5431	synonymous SNV	Gm5431:NM_001024230:exon5:c.A963G:p.Q321Q	11qB1.2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	1.07E-09	CTT	synonymous	NA	NA	NA	NA
M7	chr11	49328236	12A2p6	cell line	sgMsh2	49328236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	246	0	0	NA	exonic	Olfr1391	frameshift deletion	Olfr1391:NM_146468:exon1:c.824delT:p.Y277Ifs*2	11qB1.2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.884317771	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr11	49960554	12A2p6	cell line	sgMsh2	49960554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	36	0	0	NA	exonic	Rasgef1c	nonsynonymous SNV	"Rasgef1c:NM_001347462:exon5:c.A604T:p.S202C,Rasgef1c:NM_029004:exon5:c.A595T:p.S199C"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9144494	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	50379470	12A2p6	cell line	sgMsh2	50379470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	122	325	57	0.175384615	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362529:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362530:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362533:exon2:c.T100C:p.C34R,Hnrnph1:NM_001347487:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362522:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362524:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362525:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362527:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362528:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362532:exon3:c.T100C:p.C34R,Hnrnph1:NM_021510:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362523:exon4:c.T100C:p.C34R"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9994356	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	50785555	12A2p6	cell line	sgMsh2	50785555	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	155	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon14:c.G2096A:p.G699E	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr11	51048724	12A2p6	cell line	sgMsh2	51048724	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.T616G:p.L206V	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9999973	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	51586645	12A2p6	cell line	sgMsh2	51586645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	100	13	2	0.153846154	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon3:c.A263G:p.N88S,Phykpl:NM_028398:exon3:c.A263G:p.N88S"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.6511682	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	51831404	12A2p6	cell line	sgMsh2	51831404	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	65	16	2	0.125	exonic	Jade2	synonymous SNV	"Jade2:NM_199299:exon5:c.A321T:p.P107P,Jade2:NM_001357588:exon6:c.A537T:p.P179P"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9950055	GTG	synonymous	NA	NA	NA	NA
M7	chr11	52119225	12A2p6	cell line	sgMsh2	52119225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	100	748	178	0.237967914	exonic	Ppp2ca	nonsynonymous SNV	Ppp2ca:NM_019411:exon5:c.T659G:p.F220C	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	53375629	12A2p6	cell line	sgMsh2	53375629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	73	304	53	0.174342105	exonic	Aff4	nonsynonymous SNV	"Aff4:NM_001363331:exon4:c.T944G:p.L315R,Aff4:NM_033565:exon4:c.T944G:p.L315R"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	53478591	12A2p6	cell line	sgMsh2	53478591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	37	0	0	NA	exonic	Sowaha	synonymous SNV	Sowaha:NM_183173:exon1:c.C1317T:p.D439D	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	2	1	1	0.9760128	GGT	synonymous	NA	NA	NA	NA
M7	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	54	59	9	0.152542373	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.6867752	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr11	53684264	12A2p6	cell line	sgMsh2	53684264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	57	104	20	0.192307692	exonic	Rad50	nonsynonymous SNV	Rad50:NM_009012:exon12:c.A1831G:p.I611V	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9921594	ATA	nonsynonymous	TTAT	8	TTATTTAT	NA
M7	chr11	54325615	12A2p6	cell line	sgMsh2	54325615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	142	18	6	0.333333333	exonic	Acsl6	nonsynonymous SNV	"Acsl6:NM_001033597:exon6:c.T607C:p.Y203H,Acsl6:NM_001033598:exon6:c.T532C:p.Y178H,Acsl6:NM_001033599:exon6:c.T532C:p.Y178H,Acsl6:NM_144823:exon6:c.T607C:p.Y203H"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	54480293	12A2p6	cell line	sgMsh2	54480293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	42	11	0.261904762	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon4:c.T398C:p.M133T	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.978989	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	54482531	12A2p6	cell line	sgMsh2	54482531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	140	27	6	0.222222222	exonic	Fnip1	synonymous SNV	Fnip1:NM_173753:exon6:c.T567C:p.S189S	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	GTA	synonymous	NA	NA	NA	NA
M7	chr11	54493324	12A2p6	cell line	sgMsh2	54493324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	112	58	10	0.172413793	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon10:c.A1046G:p.N349S	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996512	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	54568451	12A2p6	cell line	sgMsh2	54568451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	183	53	15	0.283018868	exonic	Rapgef6	synonymous SNV	"Rapgef6:NM_001252494:exon6:c.A450G:p.E150E,Rapgef6:NM_001252496:exon6:c.A450G:p.E150E,Rapgef6:NM_175258:exon6:c.A450G:p.E150E"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999938	AAC	synonymous	NA	NA	NA	NA
M7	chr11	54690210	12A2p6	cell line	sgMsh2	54690210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	114	52	16	0.307692308	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon25:c.A3779C:p.N1260T,Rapgef6:NM_001252494:exon26:c.A3794C:p.N1265T,Rapgef6:NM_001252496:exon27:c.A3818C:p.N1273T"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	144	20	3	0.15	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9998672	AAC	nonsynonymous	A	5	AAAAA	NA
M7	chr11	54917807	12A2p6	cell line	sgMsh2	54917807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	54	113	23	0.203539823	exonic	Tnip1	nonsynonymous SNV	"Tnip1:NM_001199276:exon13:c.A1394G:p.N465S,Tnip1:NM_001271455:exon14:c.A1394G:p.N465S,Tnip1:NM_021327:exon14:c.A1553G:p.N518S,Tnip1:NM_001199275:exon15:c.A1553G:p.N518S,Tnip1:NM_001271456:exon15:c.A1553G:p.N518S"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	2	1	1	0.9907182	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr11	55497734	12A2p6	cell line	sgMsh2	55497734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	138	289	77	0.266435986	exonic	G3bp1	synonymous SNV	G3bp1:NM_013716:exon9:c.T921C:p.N307N	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9979811	ATA	synonymous	NA	NA	NA	NA
M7	chr11	56040841	12A2p6	cell line	sgMsh2	56040841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	69	0	0	NA	exonic	Nmur2	nonsynonymous SNV	Nmur2:NM_153079:exon1:c.A43G:p.M15V	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	57201163	12A2p6	cell line	sgMsh2	57201163	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	104	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon5:c.A683T:p.Y228F,Gria1:NM_001252403:exon5:c.A476T:p.Y159F,Gria1:NM_008165:exon5:c.A683T:p.Y228F"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	58625368	12A2p6	cell line	sgMsh2	58625368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	166	0	0	NA	exonic	Olfr323	nonsynonymous SNV	Olfr323:NM_146376:exon1:c.T677C:p.L226P	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999837	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	58625784	12A2p6	cell line	sgMsh2	58625784	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.215	91	0	0	NA	exonic	Olfr323	synonymous SNV	Olfr323:NM_146376:exon1:c.C261A:p.S87S	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9980391	AGG	synonymous	NA	NA	NA	NA
M7	chr11	58733096	12A2p6	cell line	sgMsh2	58733096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	137	0	0	NA	exonic	Olfr317	nonsynonymous SNV	Olfr317:NM_001011769:exon1:c.T68C:p.L23P	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9224818	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	58733122	12A2p6	cell line	sgMsh2	58733122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	exonic	Olfr317	synonymous SNV	Olfr317:NM_001011769:exon1:c.T42C:p.L14L	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9958713	TAA	synonymous	NA	NA	NA	NA
M7	chr11	59000260	12A2p6	cell line	sgMsh2	59000260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	88	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon93:c.T21445C:p.S7149P	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.885634	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	59007828	12A2p6	cell line	sgMsh2	59007828	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.194	172	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon84:c.T19704C:p.I6568I	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9958515	CAA	synonymous	NA	NA	NA	NA
M7	chr11	59135908	12A2p6	cell line	sgMsh2	59135908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	58	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon1:c.T468C:p.H156H,Obscn:NM_199152:exon1:c.T468C:p.H156H"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9645706	CAT	synonymous	G	5	GGGGG	NA
M7	chr11	59463124	12A2p6	cell line	sgMsh2	59463124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	78	17	2	0.117647059	exonic	Zfp867	nonsynonymous SNV	Zfp867:NM_178417:exon4:c.T1378C:p.Y460H	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.51509231	2	0.9942133	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	59761185	12A2p6	cell line	sgMsh2	59761185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	96	31	4	0.129032258	exonic	Mprip	nonsynonymous SNV	Mprip:NM_001368931:exon16:c.A6176C:p.E2059A	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	59792727	12A2p6	cell line	sgMsh2	59792727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	76	34	9	0.264705882	exonic	Flcn	synonymous SNV	"Flcn:NM_001271356:exon13:c.A1623G:p.A541A,Flcn:NM_001271357:exon13:c.A1623G:p.A541A,Flcn:NM_146018:exon13:c.A1623G:p.A541A"	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	ATG	synonymous	NA	NA	NA	NA
M7	chr11	59960641	12A2p6	cell line	sgMsh2	59960641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	37	34	5	0.147058824	exonic	Med9	nonsynonymous SNV	Med9:NM_138675:exon2:c.A295G:p.T99A	11qB1.3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9393177	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	60393818	12A2p6	cell line	sgMsh2	60393818	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	200	2	0	0	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon13:c.T1448C:p.L483P	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999976	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	60438534	12A2p6	cell line	sgMsh2	60438534	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	74	76	16	0.210526316	exonic	Gid4	nonsynonymous SNV	Gid4:NM_025757:exon5:c.C551A:p.A184D	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr11	61266903	12A2p6	cell line	sgMsh2	61266903	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	24	77	21	0.272727273	exonic	Aldh3a2	nonsynonymous SNV	"Aldh3a2:NM_001331114:exon1:c.A104T:p.Q35L,Aldh3a2:NM_007437:exon1:c.A104T:p.Q35L"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9511284	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	61491124	12A2p6	cell line	sgMsh2	61491124	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	82	37	7	0.189189189	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon3:c.C961A:p.L321I,Mapk7:NM_001291035:exon3:c.C544A:p.L182I,Mapk7:NM_001291037:exon3:c.C751A:p.L251I,Mapk7:NM_001291033:exon4:c.C754A:p.L252I,Mapk7:NM_001291036:exon4:c.C544A:p.L182I,Mapk7:NM_001361989:exon4:c.C544A:p.L182I,Mapk7:NM_011841:exon4:c.C961A:p.L321I"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	2	1	1	0.9980902	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	83	121	37	0.305785124	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	61671685	12A2p6	cell line	sgMsh2	61671685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	36	0	0	NA	exonic	Grap	nonsynonymous SNV	Grap:NM_027817:exon5:c.T481A:p.C161S	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9746481	TTG	nonsynonymous	GCTT	8	GCTTGCTT	NA
M7	chr11	62029334	12A2p6	cell line	sgMsh2	62029334	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	91	1	0	0	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001281818:exon2:c.A59C:p.D20A,Specc1:NM_001310526:exon2:c.A59C:p.D20A"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8988544	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	62211664	12A2p6	cell line	sgMsh2	62211664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	100	64	16	0.25	exonic	Specc1	synonymous SNV	"Specc1:NM_001029936:exon12:c.A2808G:p.A936A,Specc1:NM_001281818:exon14:c.A3048G:p.A1016A"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	CAT	synonymous	NA	NA	NA	NA
M7	chr11	62325584	12A2p6	cell line	sgMsh2	62325584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	229	54	0.23580786	exonic	Ncor1	synonymous SNV	"Ncor1:NM_001252313:exon41:c.C6627T:p.F2209F,Ncor1:NM_011308:exon41:c.C6426T:p.F2142F"	11qB2	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9914891	AGA	synonymous	NA	NA	NA	NA
M7	chr11	65855384	12A2p6	cell line	sgMsh2	65855384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	52	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon63:c.A11902G:p.T3968A	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	67211527	12A2p6	cell line	sgMsh2	67211527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	111	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.A2643C:p.E881D	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9404966	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	67245792	12A2p6	cell line	sgMsh2	67245792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	122	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.T1395C:p.I465I	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998022	TTG	synonymous	NA	NA	NA	NA
M7	chr11	67248692	12A2p6	cell line	sgMsh2	67248692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	109	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon16:c.T1834C:p.Y612H	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9970559	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	67681255	12A2p6	cell line	sgMsh2	67681255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	161	0	0	NA	exonic	Gas7	nonsynonymous SNV	"Gas7:NM_001277080:exon11:c.A800G:p.Y267C,Gas7:NM_001109657:exon12:c.A989G:p.Y330C,Gas7:NM_001277079:exon12:c.A977G:p.Y326C,Gas7:NM_008088:exon12:c.A1004G:p.Y335C"	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9946914	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	67695718	12A2p6	cell line	sgMsh2	67695718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	117	0	0	NA	exonic	Rcvrn	nonsynonymous SNV	Rcvrn:NM_009038:exon1:c.A302G:p.K101R	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	67742292	12A2p6	cell line	sgMsh2	67742292	C	T	SNV	Mutect2;Vardict	2	0.218	59	0	0	NA	exonic	Glp2r	synonymous SNV	Glp2r:NM_175681:exon7:c.G714A:p.L238L	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9921894	ACA	synonymous	NA	NA	NA	NA
M7	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	43	35	5	0.142857143	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9517141	AAC	synonymous	NA	NA	NA	NA
M7	chr11	69127508	12A2p6	cell line	sgMsh2	69127508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	79	0	0	NA	exonic	Aloxe3	synonymous SNV	Aloxe3:NM_011786:exon2:c.T330C:p.T110T	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.5997944	CTG	synonymous	TACTG	11	TACTGTACTGT	NA
M7	chr11	69197667	12A2p6	cell line	sgMsh2	69197667	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	43	0	0	NA	exonic	Alox8	nonsynonymous SNV	Alox8:NM_009661:exon1:c.G143A:p.G48D	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.954309	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.139	52	11	0	0	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.633609124	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7	chr11	69404925	12A2p6	cell line	sgMsh2	69404925	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	53	32	6	0.1875	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon12:c.T2515C:p.Y839H	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	69436228	12A2p6	cell line	sgMsh2	69436228	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	187	0	0	NA	exonic	Dnah2	synonymous SNV	Dnah2:NM_001081330:exon69:c.T10551C:p.R3517R	11qB3	chr11-3132249-69579350	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	AAC	synonymous	NA	NA	NA	NA
M7	chr11	69668102	12A2p6	cell line	sgMsh2	69668102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	204	64	17	0.265625	exonic	Eif4a1	nonsynonymous SNV	"Eif4a1:NM_001159375:exon9:c.A916G:p.M306V,Eif4a1:NM_144958:exon9:c.A916G:p.M306V"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999981	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr11	69685258	12A2p6	cell line	sgMsh2	69685258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	27	1	0	0	exonic	Tnfsf13	nonsynonymous SNV	"Tnfsf13:NM_001159505:exon1:c.T2C:p.M1T,Tnfsf13:NM_023517:exon1:c.T2C:p.M1T"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.958459	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	69817073	12A2p6	cell line	sgMsh2	69817073	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	84	0	0	NA	exonic	Spem2	nonsynonymous SNV	Spem2:NM_175368:exon3:c.T1065G:p.S355R	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9982947	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	69827851	12A2p6	cell line	sgMsh2	69827851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	89	35	8	0.228571429	exonic	Nlgn2	nonsynonymous SNV	"Nlgn2:NM_198862:exon5:c.A902C:p.N301T,Nlgn2:NM_001364137:exon6:c.A902C:p.N301T"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	0.9987153	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	69913202	12A2p6	cell line	sgMsh2	69913202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	63	32	4	0.125	exonic	Neurl4	synonymous SNV	"Neurl4:NM_001291119:exon28:c.T4491C:p.Y1497Y,Neurl4:NM_001013414:exon29:c.T4563C:p.Y1521Y,Neurl4:NM_001291118:exon29:c.T4557C:p.Y1519Y"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9944088	ATA	synonymous	NA	NA	NA	NA
M7	chr11	70228498	12A2p6	cell line	sgMsh2	70228498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	63	1	0	0	exonic	Bcl6b	nonsynonymous SNV	Bcl6b:NM_007528:exon3:c.A391G:p.I131V	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9944088	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	70460791	12A2p6	cell line	sgMsh2	70460791	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	45	0	0	NA	exonic	Zmynd15	synonymous SNV	Zmynd15:NM_001029929:exon2:c.T222A:p.G74G	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9846293	GTG	synonymous	NA	NA	NA	NA
M7	chr11	70726356	12A2p6	cell line	sgMsh2	70726356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	31	387	81	0.209302326	exonic	Kif1c	nonsynonymous SNV	Kif1c:NM_153103:exon22:c.G2479A:p.A827T	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.966611	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	70934579	12A2p6	cell line	sgMsh2	70934579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	146	117	19	0.162393162	exonic	Rabep1	nonsynonymous SNV	"Rabep1:NM_001291141:exon13:c.T2071C:p.C691R,Rabep1:NM_001291142:exon13:c.T2080C:p.C694R,Rabep1:NM_019400:exon14:c.T2200C:p.C734R,Rabep1:NM_001291143:exon15:c.T1948C:p.C650R"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.989159568	1	0.9999191	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	71771899	12A2p6	cell line	sgMsh2	71771899	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	178	0	0	NA	exonic	Wscd1	synonymous SNV	"Wscd1:NM_001357960:exon5:c.C765T:p.V255V,Wscd1:NM_001357965:exon5:c.C765T:p.V255V,Wscd1:NM_177618:exon5:c.C765T:p.V255V"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999917	TCA	synonymous	NA	NA	NA	NA
M7	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	122	3	0	0	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.984601229	1	0.9996553	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr11	72176682	12A2p6	cell line	sgMsh2	72176682	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.194	110	8	2	0.25	exonic	4933427D14Rik	nonsynonymous SNV	"4933427D14Rik:NM_001361564:exon10:c.A1781G:p.D594G,4933427D14Rik:NM_028963:exon10:c.A1781G:p.D594G"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.884317771	1	0.9834459	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr11	72304809	12A2p6	cell line	sgMsh2	72304809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	57	3	0	0	exonic	Xaf1	synonymous SNV	Xaf1:NM_001037713:exon3:c.A312G:p.V104V	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9921594	TAC	synonymous	NA	NA	NA	NA
M7	chr11	72317574	12A2p6	cell line	sgMsh2	72317574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.302	115	0	0	NA	exonic	Fbxo39	nonsynonymous SNV	Fbxo39:NM_001099688:exon2:c.A751G:p.T251A	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9997058	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	72980679	12A2p6	cell line	sgMsh2	72980679	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	123	20	1	0.05	exonic	Atp2a3	nonsynonymous SNV	"Atp2a3:NM_001163336:exon14:c.G2005T:p.A669S,Atp2a3:NM_001163337:exon14:c.G2005T:p.A669S,Atp2a3:NM_016745:exon14:c.G2005T:p.A669S"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998131	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	73075717	12A2p6	cell line	sgMsh2	73075717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	151	44	8	0.181818182	exonic	Ncbp3	synonymous SNV	Ncbp3:NM_025818:exon11:c.T1398C:p.D466D	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999618	ATG	synonymous	NA	NA	NA	NA
M7	chr11	73131723	12A2p6	cell line	sgMsh2	73131723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	236	1	0	0	exonic	Itgae	synonymous SNV	"Itgae:NM_001361245:exon23:c.T2760C:p.S920S,Itgae:NM_008399:exon23:c.T2763C:p.S921S"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.907109466	1	0.9997992	GTG	synonymous	NA	NA	NA	NA
M7	chr11	73395580	12A2p6	cell line	sgMsh2	73395580	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	243	0	0	NA	exonic	Olfr1	synonymous SNV	Olfr1:NM_146921:exon3:c.G441A:p.L147L	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999998	ACA	synonymous	NA	NA	NA	NA
M7	chr11	73589528	12A2p6	cell line	sgMsh2	73589528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	358	0	0	NA	exonic	Olfr385	nonsynonymous SNV	Olfr385:NM_147023:exon1:c.A209G:p.D70G	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.9344595	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr11	73814500	12A2p6	cell line	sgMsh2	73814500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	183	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T581C:p.V194A	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999938	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	73906934	12A2p6	cell line	sgMsh2	73906934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	204	0	0	NA	exonic	Olfr395	nonsynonymous SNV	Olfr395:NM_147005:exon1:c.A557G:p.K186R	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999981	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	73964790	12A2p6	cell line	sgMsh2	73964790	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	354	0	0	NA	exonic	Olfr397	synonymous SNV	Olfr397:NM_146346:exon1:c.T181C:p.L61L	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.109400137	3	1	CTT	synonymous	NA	NA	NA	NA
M7	chr11	74122125	12A2p6	cell line	sgMsh2	74122125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	262	0	0	NA	exonic	Olfr401	nonsynonymous SNV	Olfr401:NM_146706:exon1:c.A835G:p.I279V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	74784202	12A2p6	cell line	sgMsh2	74784202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	176	72	9	0.125	exonic	Mettl16	synonymous SNV	Mettl16:NM_026197:exon3:c.T273C:p.D91D	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.952692856	1	0.9998916	ATT	synonymous	NA	NA	NA	NA
M7	chr11	75167319	12A2p6	cell line	sgMsh2	75167319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	23	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T263C:p.M88T,Hic1:NM_010430:exon2:c.T743C:p.M248T"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	9.98E-08	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	75410975	12A2p6	cell line	sgMsh2	75410975	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	102	0	0	NA	exonic	Serpinf1	nonsynonymous SNV	Serpinf1:NM_011340:exon7:c.T853G:p.L285V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.957251195	1	0.9977712	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	75432703	12A2p6	cell line	sgMsh2	75432703	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	106	0	0	NA	exonic	Serpinf2	synonymous SNV	Serpinf2:NM_008878:exon10:c.G1176A:p.E392E	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.902551127	1	0.9897061	CCT	synonymous	NA	NA	NA	NA
M7	chr11	75502536	12A2p6	cell line	sgMsh2	75502536	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	112	223	47	0.210762332	exonic	Prpf8	nonsynonymous SNV	Prpf8:NM_138659:exon31:c.T4985G:p.I1662S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996512	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr11	75503400	12A2p6	cell line	sgMsh2	75503400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	279	357	67	0.18767507	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon32:c.T5268C:p.S1756S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.98004289	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M7	chr11	76000102	12A2p6	cell line	sgMsh2	76000102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	21	1	0	0	exonic	1700016K19Rik	nonsynonymous SNV	1700016K19Rik:NM_198637:exon1:c.A41G:p.E14G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	0.9425816	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	76202236	12A2p6	cell line	sgMsh2	76202236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	29	7	1	0.142857143	exonic	Tlcd3a	nonsynonymous SNV	Tlcd3a:NM_027773:exon1:c.T103A:p.C35S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9627488	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	76424923	12A2p6	cell line	sgMsh2	76424923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	62	104	19	0.182692308	exonic	Abr	nonsynonymous SNV	"Abr:NM_001363379:exon3:c.T323C:p.V108A,Abr:NM_001291186:exon13:c.T1298C:p.V433A,Abr:NM_001346670:exon17:c.T1841C:p.V614A,Abr:NM_198018:exon17:c.T1988C:p.V663A,Abr:NM_198894:exon18:c.T1814C:p.V605A,Abr:NM_198895:exon18:c.T1952C:p.V651A"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	0.9940844	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	76750815	12A2p6	cell line	sgMsh2	76750815	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	204	127	1	0.007874016	exonic	Gosr1	nonsynonymous SNV	"Gosr1:NM_001356321:exon5:c.A430G:p.I144V,Gosr1:NM_016810:exon5:c.A436G:p.I146V"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.154983527	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr11	77455152	12A2p6	cell line	sgMsh2	77455152	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	118	43	9	0.209302326	exonic	Ssh2	nonsynonymous SNV	"Ssh2:NM_001291190:exon14:c.A3962T:p.Q1321L,Ssh2:NM_177710:exon15:c.A3944T:p.Q1315L"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.948134517	1	0.9984859	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	77692417	12A2p6	cell line	sgMsh2	77692417	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	226	188	32	0.170212766	exonic	Nufip2	nonsynonymous SNV	Nufip2:NM_001024205:exon2:c.A1156C:p.T386P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.893434449	1	0.9993292	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	78154594	12A2p6	cell line	sgMsh2	78154594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	43	27	5	0.185185185	exonic	Fam222b	nonsynonymous SNV	"Fam222b:NM_001346762:exon3:c.T596C:p.M199T,Fam222b:NM_001364110:exon3:c.T980C:p.M327T,Fam222b:NM_145430:exon3:c.T980C:p.M327T"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9828142	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	78171162	12A2p6	cell line	sgMsh2	78171162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	82	9	1	0.111111111	exonic	Nek8	nonsynonymous SNV	Nek8:NM_080849:exon5:c.T755C:p.I252T	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9980902	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	78366894	12A2p6	cell line	sgMsh2	78366894	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	123	1	0	0	exonic	Foxn1	nonsynonymous SNV	"Foxn1:NM_001277290:exon5:c.T800G:p.L267R,Foxn1:NM_008238:exon5:c.T803G:p.L268R"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998131	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	78515125	12A2p6	cell line	sgMsh2	78515125	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	160	145	43	0.296551724	exonic	Poldip2	nonsynonymous SNV	Poldip2:NM_026389:exon3:c.T281A:p.V94D	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.674634175	2	0.9910771	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	78589348	12A2p6	cell line	sgMsh2	78589348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	150	76	22	0.289473684	exonic	Nlk	nonsynonymous SNV	Nlk:NM_008702:exon5:c.T794G:p.I265S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.829617702	1	0.9281809	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	78929831	12A2p6	cell line	sgMsh2	78929831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	123	0	0	NA	exonic	Nos2	synonymous SNV	Nos2:NM_010927:exon4:c.A261C:p.G87G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998131	GAG	synonymous	NA	NA	NA	NA
M7	chr11	79473420	12A2p6	cell line	sgMsh2	79473420	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.028	194	44	2	0.045454545	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon35:c.A4675G:p.T1559A	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.127633493	3	1	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	79680895	12A2p6	cell line	sgMsh2	79680895	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	66	2	1	0.5	exonic	Rab11fip4	synonymous SNV	Rab11fip4:NM_175543:exon4:c.C444A:p.P148P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.756684278	1	0.6462182	CCC	synonymous	NA	NA	NA	NA
M7	chr11	80330582	12A2p6	cell line	sgMsh2	80330582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	66	0	0	NA	exonic	Rhbdl3	nonsynonymous SNV	Rhbdl3:NM_139228:exon5:c.T545C:p.V182A	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9952797	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	82785352	12A2p6	cell line	sgMsh2	82785352	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	130	71	20	0.281690141	exonic	Lig3	nonsynonymous SNV	"Lig3:NM_001291245:exon3:c.A588C:p.K196N,Lig3:NM_001291246:exon3:c.A588C:p.K196N,Lig3:NM_001291247:exon3:c.A588C:p.K196N,Lig3:NM_010716:exon3:c.A588C:p.K196N"	11qC	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	0.957251195	1	0.9993504	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M7	chr11	82881778	12A2p6	cell line	sgMsh2	82881778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	92	24	3	0.125	exonic	Rad51d	synonymous SNV	"Rad51d:NM_001277941:exon6:c.G525A:p.Q175Q,Rad51d:NM_001277939:exon7:c.G660A:p.Q220Q,Rad51d:NM_011235:exon7:c.G660A:p.Q220Q"	11qC	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	1	1	1	0.9989161	TCT	synonymous	NA	NA	NA	NA
M7	chr11	82901049	12A2p6	cell line	sgMsh2	82901049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	28	24	4	0.166666667	exonic	Nle1	nonsynonymous SNV	Nle1:NM_145431:exon13:c.T1447C:p.W483R	11qC	chr11-69590981-82929860	4	3	1	0.9	4.102505121	NA	2	1	1	0.96066	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	83487390	12A2p6	cell line	sgMsh2	83487390	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	188	283	10	0.035335689	exonic	Taf15	frameshift deletion	Taf15:NM_027427:exon6:c.455delA:p.N153Tfs*12	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr11	83588833	12A2p6	cell line	sgMsh2	83588833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	76	0	0	NA	exonic	Ccl6	nonsynonymous SNV	Ccl6:NM_009139:exon4:c.A343G:p.I115V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	84293969	12A2p6	cell line	sgMsh2	84293969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	99	8	3	0.375	exonic	Acaca	synonymous SNV	Acaca:NM_133360:exon30:c.T3810C:p.H1270H	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.682969	ATA	synonymous	NA	NA	NA	NA
M7	chr11	84902165	12A2p6	cell line	sgMsh2	84902165	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	170	25	1	0.04	exonic	Myo19	nonsynonymous SNV	"Myo19:NM_001362893:exon16:c.G1044T:p.K348N,Myo19:NM_025414:exon18:c.G1863T:p.K621N"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.1868919	3	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	177	90	25	0.277777778	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999913	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	86139118	12A2p6	cell line	sgMsh2	86139118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	131	24	3	0.125	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon12:c.A1699G:p.I567V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9318238	ATA	nonsynonymous	A	5	AAAAA	NA
M7	chr11	86328609	12A2p6	cell line	sgMsh2	86328609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	140	67	16	0.23880597	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon7:c.T1010C:p.V337A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	86486500	12A2p6	cell line	sgMsh2	86486500	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	79	102	17	0.166666667	exonic	Rnft1	nonsynonymous SNV	Rnft1:NM_029788:exon2:c.T389C:p.I130T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr11	86552980	12A2p6	cell line	sgMsh2	86552980	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	189	13	5	0.384615385	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T513A:p.I171I,Tubd1:NM_001199046:exon4:c.T513A:p.I171I,Tubd1:NM_001199047:exon4:c.T513A:p.I171I,Tubd1:NM_019756:exon4:c.T513A:p.I171I"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.9649788	TTA	synonymous	NA	NA	NA	NA
M7	chr11	86771947	12A2p6	cell line	sgMsh2	86771947	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	193	173	51	0.294797688	exonic	Dhx40	nonsynonymous SNV	Dhx40:NM_026191:exon16:c.T1918G:p.F640V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999965	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	87196947	12A2p6	cell line	sgMsh2	87196947	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	80	31	7	0.225806452	exonic	Trim37	nonsynonymous SNV	"Trim37:NM_001363026:exon17:c.A1838T:p.D613V,Trim37:NM_001363025:exon18:c.A1883T:p.D628V,Trim37:NM_001363027:exon18:c.A1883T:p.D628V,Trim37:NM_001363028:exon18:c.A1883T:p.D628V,Trim37:NM_197987:exon18:c.A1883T:p.D628V"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.8815197	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	87231262	12A2p6	cell line	sgMsh2	87231262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	131	0	0	NA	exonic	Ppm1e	nonsynonymous SNV	Ppm1e:NM_177167:exon7:c.T1868C:p.V623A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9706291	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	87535599	12A2p6	cell line	sgMsh2	87535599	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	154	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon22:c.C3486A:p.T1162T,Tex14:NM_031386:exon22:c.C3450A:p.T1150T"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999678	CCT	synonymous	NA	NA	NA	NA
M7	chr11	87775042	12A2p6	cell line	sgMsh2	87775042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	56	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon17:c.T2605C:p.C869R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9917055	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	88844524	12A2p6	cell line	sgMsh2	88844524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	136	50	15	0.3	exonic	Akap1	synonymous SNV	"Akap1:NM_001042541:exon2:c.T1311C:p.G437G,Akap1:NM_009648:exon2:c.T1311C:p.G437G"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	CAC	synonymous	NA	NA	NA	NA
M7	chr11	88943840	12A2p6	cell line	sgMsh2	88943840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	150	369	92	0.249322493	exonic	Scpep1	nonsynonymous SNV	Scpep1:NM_029023:exon5:c.A503G:p.Y168C	11qC	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9975182	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	94463486	12A2p6	cell line	sgMsh2	94463486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	74	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon5:c.T602C:p.V201A,Cacna1g:NM_001177888:exon5:c.T602C:p.V201A,Cacna1g:NM_001177890:exon5:c.T602C:p.V201A,Cacna1g:NM_009783:exon5:c.T602C:p.V201A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	1	0.9969966	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	94570669	12A2p6	cell line	sgMsh2	94570669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	171	18	5	0.277777778	exonic	Acsf2	nonsynonymous SNV	Acsf2:NM_153807:exon7:c.A833G:p.H278R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	94632131	12A2p6	cell line	sgMsh2	94632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	310	373	94	0.252010724	exonic	Lrrc59	synonymous SNV	Lrrc59:NM_133807:exon2:c.T156C:p.S52S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	5.62E-09	GTA	synonymous	NA	NA	NA	NA
M7	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	96	10	2	0.2	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9311507	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	95031863	12A2p6	cell line	sgMsh2	95031863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	100	43	4	0.093023256	exonic	Pdk2	nonsynonymous SNV	"Pdk2:NM_001361915:exon4:c.T298C:p.S100P,Pdk2:NM_133667:exon4:c.T490C:p.S164P"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.987852	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	95375646	12A2p6	cell line	sgMsh2	95375646	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.333	30	10	0	0	exonic	Fam117a	frameshift deletion	Fam117a:NM_172543:exon5:c.591delC:p.P199Qfs*15	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr11	96957655	12A2p6	cell line	sgMsh2	96957655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	74	22	9	0.409090909	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon4:c.A1138G:p.T380A,Sp2:NM_001363226:exon4:c.A1123G:p.T375A,Sp2:NM_030220:exon4:c.A1141G:p.T381A,Sp2:NM_001363225:exon5:c.A1123G:p.T375A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	97099192	12A2p6	cell line	sgMsh2	97099192	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	58	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon6:c.A1173C:p.E391D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9925886	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	97231984	12A2p6	cell line	sgMsh2	97231984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	158	283	67	0.236749117	exonic	Npepps	nonsynonymous SNV	Npepps:NM_008942:exon13:c.A1444G:p.S482G	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	98092151	12A2p6	cell line	sgMsh2	98092151	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	123	72	12	0.166666667	exonic	Fbxl20	nonsynonymous SNV	Fbxl20:NM_028149:exon13:c.A984T:p.Q328H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	98398962	12A2p6	cell line	sgMsh2	98398962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	92	7	2	0.285714286	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon2:c.T202C:p.C68R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.629050785	2	0.9632261	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	99145304	12A2p6	cell line	sgMsh2	99145304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	170	2	0	0	exonic	Ccr7	nonsynonymous SNV	"Ccr7:NM_001301713:exon2:c.T602C:p.V201A,Ccr7:NM_007719:exon3:c.T791C:p.V264A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9914085	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	99388055	12A2p6	cell line	sgMsh2	99388055	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	160	4	1	0.25	exonic	Krt10	nonsynonymous SNV	Krt10:NM_010660:exon2:c.T632G:p.L211R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999771	CAG	nonsynonymous	GCA	9	GCAGCAGCA	NA
M7	chr11	100037746	12A2p6	cell line	sgMsh2	100037746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	140	0	0	NA	exonic	Krt34	synonymous SNV	Krt34:NM_027563:exon7:c.T1152C:p.P384P	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	AAG	synonymous	NA	NA	NA	NA
M7	chr11	100463034	12A2p6	cell line	sgMsh2	100463034	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	173	32	5	0.15625	exonic	Klhl11	nonsynonymous SNV	Klhl11:NM_172565:exon2:c.A1960T:p.R654W	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.999989	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	100719941	12A2p6	cell line	sgMsh2	100719941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	87	348	70	0.201149425	exonic	Rab5c	nonsynonymous SNV	"Rab5c:NM_001305003:exon2:c.A140G:p.H47R,Rab5c:NM_024456:exon2:c.A140G:p.H47R"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr11	100767017	12A2p6	cell line	sgMsh2	100767017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	63	18	5	0.277777778	exonic	Ghdc	nonsynonymous SNV	Ghdc:NM_031871:exon9:c.A1385G:p.N462S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8041424	GTT	nonsynonymous	GCAG	8	GCAGGCAG	NA
M7	chr11	101079697	12A2p6	cell line	sgMsh2	101079697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	18	1	0	0	exonic	Hsd17b1	nonsynonymous SNV	Hsd17b1:NM_010475:exon5:c.T577C:p.F193L	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9326447	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	101159134	12A2p6	cell line	sgMsh2	101159134	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	159	2	0	0	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon6:c.T605A:p.V202E	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999758	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	101174536	12A2p6	cell line	sgMsh2	101174536	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	52	0	0	NA	exonic	Ccr10	nonsynonymous SNV	Ccr10:NM_007721:exon2:c.T167A:p.L56Q	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CAG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M7	chr11	101178044	12A2p6	cell line	sgMsh2	101178044	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	102	5	3	0.6	exonic	Cntnap1	nonsynonymous SNV	Cntnap1:NM_016782:exon4:c.C412T:p.L138F	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr11	101296209	12A2p6	cell line	sgMsh2	101296209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	86	14	4	0.285714286	exonic	Becn1	synonymous SNV	Becn1:NM_001359821:exon4:c.T303C:p.I101I	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	TAA	synonymous	NA	NA	NA	NA
M7	chr11	101296219	12A2p6	cell line	sgMsh2	101296219	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	91	16	5	0.3125	exonic	Becn1	nonsynonymous SNV	Becn1:NM_001359821:exon4:c.G293A:p.G98E	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.998853	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr11	101460511	12A2p6	cell line	sgMsh2	101460511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	64	270	44	0.162962963	exonic	Vat1	nonsynonymous SNV	Vat1:NM_012037:exon5:c.G1003T:p.A335S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9947155	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	88	229	52	0.227074236	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	102205371	12A2p6	cell line	sgMsh2	102205371	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	81	48	13	0.270833333	exonic	Hdac5	synonymous SNV	"Hdac5:NM_001077696:exon9:c.C921T:p.P307P,Hdac5:NM_001284250:exon9:c.C918T:p.P306P,Hdac5:NM_010412:exon9:c.C918T:p.P306P,Hdac5:NM_001284249:exon10:c.C795T:p.P265P,Hdac5:NM_001361596:exon10:c.C795T:p.P265P,Hdac5:NM_001284248:exon11:c.C975T:p.P325P"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CGG	synonymous	NA	NA	NA	NA
M7	chr11	102605275	12A2p6	cell line	sgMsh2	102605275	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	41	10	1	0.1	exonic	Fzd2	nonsynonymous SNV	Fzd2:NM_020510:exon1:c.G544C:p.G182R	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	1	0.9807891	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr11	102605588	12A2p6	cell line	sgMsh2	102605588	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.309	86	22	3	0.136363636	exonic	Fzd2	nonsynonymous SNV	Fzd2:NM_020510:exon1:c.T857G:p.I286S	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr11	103543231	12A2p6	cell line	sgMsh2	103543231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.A2583T:p.Q861H	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999978	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	105108949	12A2p6	cell line	sgMsh2	105108949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	82	0	0	NA	exonic	Efcab3	synonymous SNV	Efcab3:NM_001081046:exon7:c.A663G:p.K221K	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	AAC	synonymous	NA	NA	NA	NA
M7	chr11	105128756	12A2p6	cell line	sgMsh2	105128756	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	116	47	9	0.191489362	exonic	Mettl2	nonsynonymous SNV	Mettl2:NM_172567:exon3:c.A218T:p.N73I	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	105385472	12A2p6	cell line	sgMsh2	105385472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	90	0	0	NA	exonic	Marchf10	synonymous SNV	Marchf10:NM_172568:exon8:c.A1989G:p.L663L	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9874059	GTA	synonymous	NA	NA	NA	NA
M7	chr11	105798628	12A2p6	cell line	sgMsh2	105798628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	75	1	0	0	exonic	Tanc2	synonymous SNV	Tanc2:NM_181071:exon7:c.A615G:p.L205L	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	TAG	synonymous	NA	NA	NA	NA
M7	chr11	106037155	12A2p6	cell line	sgMsh2	106037155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	74	61	12	0.196721311	exonic	Dcaf7	nonsynonymous SNV	Dcaf7:NM_027946:exon1:c.A32G:p.Y11C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr11	106205433	12A2p6	cell line	sgMsh2	106205433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	200	277	65	0.23465704	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.A764G:p.D255G	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9995603	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr11	106376336	12A2p6	cell line	sgMsh2	106376336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	37	0	0	NA	exonic	Prr29	nonsynonymous SNV	Prr29:NM_029345:exon4:c.A326G:p.Y109C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.792991	TAC	nonsynonymous	CTTGC	11	CTTGCCTTGCC	NA
M7	chr11	106751363	12A2p6	cell line	sgMsh2	106751363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	207	4	3	0.75	exonic	Milr1	nonsynonymous SNV	"Milr1:NM_001033435:exon1:c.T80C:p.L27P,Milr1:NM_001271372:exon1:c.T80C:p.L27P,Milr1:NM_001271373:exon1:c.T80C:p.L27P,Milr1:NM_001271374:exon1:c.T80C:p.L27P,Milr1:NM_001271375:exon1:c.T80C:p.L27P"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9488698	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr11	106779085	12A2p6	cell line	sgMsh2	106779085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	120	21	14	0.666666667	exonic	Polg2	nonsynonymous SNV	"Polg2:NM_001353435:exon1:c.A358G:p.R120G,Polg2:NM_015810:exon1:c.A358G:p.R120G"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	106782082	12A2p6	cell line	sgMsh2	106782082	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	273	1326	309	0.233031674	exonic	Ddx5	nonsynonymous SNV	"Ddx5:NM_007840:exon13:c.A1616T:p.N539I,Ddx5:NM_001355676:exon14:c.A1616T:p.N539I,Ddx5:NM_001355677:exon14:c.A1616T:p.N539I"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	3.87E-08	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr11	107671123	12A2p6	cell line	sgMsh2	107671123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	39	28	10	0.357142857	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon29:c.T4635C:p.H1545H,Helz:NM_001368755:exon30:c.T4632C:p.H1544H"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8155515	ATG	synonymous	NA	NA	NA	NA
M7	chr11	107735220	12A2p6	cell line	sgMsh2	107735220	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	84	0	0	NA	exonic	Cacng4	nonsynonymous SNV	Cacng4:NM_019431:exon4:c.G544T:p.G182C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9968693	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr11	107735260	12A2p6	cell line	sgMsh2	107735260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	101	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.T504C:p.S168S	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	CAC	synonymous	NA	NA	NA	NA
M7	chr11	109281543	12A2p6	cell line	sgMsh2	109281543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	95	0	0	NA	exonic	Rgs9	synonymous SNV	"Rgs9:NM_001165934:exon2:c.C60T:p.I20I,Rgs9:NM_011268:exon2:c.C60T:p.I20I"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	CGA	synonymous	NA	NA	NA	NA
M7	chr11	109936435	12A2p6	cell line	sgMsh2	109936435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	184	0	0	NA	exonic	Abca8b	nonsynonymous SNV	"Abca8b:NM_001362749:exon35:c.A4346G:p.Y1449C,Abca8b:NM_013851:exon36:c.A4532G:p.Y1511C"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9999864	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	110078743	12A2p6	cell line	sgMsh2	110078743	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	99	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon8:c.T1006A:p.L336M	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9962095	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	110151971	12A2p6	cell line	sgMsh2	110151971	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	104	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon9:c.G1251A:p.A417A	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9917593	ACG	synonymous	NA	NA	NA	NA
M7	chr11	110210173	12A2p6	cell line	sgMsh2	110210173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	158	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon21:c.T2786C:p.I929T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9892985	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	112784015	12A2p6	cell line	sgMsh2	112784015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	56	87	17	0.195402299	exonic	Sox9	nonsynonymous SNV	Sox9:NM_011448:exon2:c.A638G:p.H213R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9917055	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	113625125	12A2p6	cell line	sgMsh2	113625125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	58	0	0	NA	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.T869C:p.L290P,Sstr2:NM_009217:exon2:c.T869C:p.L290P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.729334244	1	0.563439	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	113709409	12A2p6	cell line	sgMsh2	113709409	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	41	0	0	NA	exonic	Cpsf4l	synonymous SNV	"Cpsf4l:NM_001164532:exon1:c.A81C:p.L27L,Cpsf4l:NM_001362806:exon1:c.A81C:p.L27L,Cpsf4l:NM_026682:exon1:c.A81C:p.L27L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.761242617	1	0.7385023	GTA	synonymous	NA	NA	NA	NA
M7	chr11	113842148	12A2p6	cell line	sgMsh2	113842148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	71	0	0	NA	exonic	Sdk2	nonsynonymous SNV	Sdk2:NM_172800:exon21:c.A2870G:p.Y957C	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr11	115000810	12A2p6	cell line	sgMsh2	115000810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	272	0	0	NA	exonic	Cd300c2	synonymous SNV	Cd300c2:NM_134158:exon2:c.T237C:p.N79N	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	4.09E-08	CAT	synonymous	NA	NA	NA	NA
M7	chr11	115260855	12A2p6	cell line	sgMsh2	115260855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	43	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T278C:p.I93T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9828142	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	115261107	12A2p6	cell line	sgMsh2	115261107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T26C:p.L9P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	2	1	1	0.9627488	CAG	nonsynonymous	GGGC	8	GGGCGGGC	NA
M7	chr11	115323645	12A2p6	cell line	sgMsh2	115323645	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	53	0	0	NA	exonic	Otop2	stopgain	"Otop2:NM_001362400:exon3:c.G227A:p.W76X,Otop2:NM_172801:exon3:c.G227A:p.W76X"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9866246	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr11	115390987	12A2p6	cell line	sgMsh2	115390987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	44	26	0	0	exonic	Cdr2l	nonsynonymous SNV	Cdr2l:NM_001080929:exon3:c.A317G:p.K106R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.706542549	1	6.76E-07	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr11	115581817	12A2p6	cell line	sgMsh2	115581817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	201	142	5	0.035211268	exonic	Nup85	nonsynonymous SNV	Nup85:NM_001002929:exon15:c.T1472C:p.I491T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.428483868	2	0.9999622	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr11	115797158	12A2p6	cell line	sgMsh2	115797158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	38	70	26	0.371428571	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon28:c.T3530A:p.L1177Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9773057	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	115848252	12A2p6	cell line	sgMsh2	115848252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	38	18	1	0.055555556	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon10:c.A948G:p.S316S,Llgl2:NM_145438:exon10:c.A948G:p.S316S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9773057	CAG	synonymous	NA	NA	NA	NA
M7	chr11	115888484	12A2p6	cell line	sgMsh2	115888484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	73	3	1	0.333333333	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon53:c.T8003C:p.L2668P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.601700751	2	0.9452993	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	116293974	12A2p6	cell line	sgMsh2	116293974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	33	25	2	0.08	exonic	Exoc7	nonsynonymous SNV	"Exoc7:NM_001162872:exon11:c.A1334G:p.Q445R,Exoc7:NM_001362839:exon11:c.A1334G:p.Q445R,Exoc7:NM_001347636:exon12:c.A1427G:p.Q476R,Exoc7:NM_001378961:exon12:c.A1403G:p.Q468R,Exoc7:NM_016857:exon12:c.A1427G:p.Q476R,Exoc7:NM_001362838:exon13:c.A1496G:p.Q499R,Exoc7:NM_001378960:exon13:c.A1496G:p.Q499R"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9700852	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr11	116294024	12A2p6	cell line	sgMsh2	116294024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	38	69	10	0.144927536	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.A1284G:p.L428L,Exoc7:NM_001362839:exon11:c.A1284G:p.L428L,Exoc7:NM_001347636:exon12:c.A1377G:p.L459L,Exoc7:NM_001378961:exon12:c.A1353G:p.L451L,Exoc7:NM_016857:exon12:c.A1377G:p.L459L,Exoc7:NM_001362838:exon13:c.A1446G:p.L482L,Exoc7:NM_001378960:exon13:c.A1446G:p.L482L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9773057	GTA	synonymous	NA	NA	NA	NA
M7	chr11	117812466	12A2p6	cell line	sgMsh2	117812466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	114	29	0.254385965	exonic	Syngr2	nonsynonymous SNV	Syngr2:NM_009304:exon2:c.C107T:p.A36V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr11	119416535	12A2p6	cell line	sgMsh2	119416535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	122	20	5	0.25	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon11:c.T2020C:p.C674R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9995937	CTG	nonsynonymous	TGCA	8	TGCATGCA	NA
M7	chr11	119486149	12A2p6	cell line	sgMsh2	119486149	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	104	15	2	0.133333333	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon68:c.A15438C:p.Q5146H	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7321232	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	120271785	12A2p6	cell line	sgMsh2	120271785	G	C	SNV	Mutect2;Vardict	2	0.121	34	21	4	0.19047619	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.G908C:p.G303A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.551559022	2	0.7243787	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr11	120272629	12A2p6	cell line	sgMsh2	120272629	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	42	30	4	0.133333333	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.C1752A:p.H584Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9814434	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	58	149	29	0.194630872	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9925886	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr11	120785152	12A2p6	cell line	sgMsh2	120785152	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	137	51	10	0.196078431	exonic	Gps1	nonsynonymous SNV	"Gps1:NM_001177874:exon2:c.A65C:p.D22A,Gps1:NM_001346709:exon2:c.A65C:p.D22A,Gps1:NM_001363440:exon2:c.A65C:p.D22A,Gps1:NM_145370:exon2:c.A182C:p.D61A"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7656472	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr11	121459410	12A2p6	cell line	sgMsh2	121459410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	111	27	6	0.222222222	exonic	Tbcd	nonsynonymous SNV	Tbcd:NM_029878:exon3:c.T245C:p.M82T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9098262	ATG	nonsynonymous	GAT	8	GATGATGA	NA
M7	chr11	121460477	12A2p6	cell line	sgMsh2	121460477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	153	34	6	0.176470588	exonic	Tbcd	synonymous SNV	Tbcd:NM_029878:exon4:c.T402C:p.D134D	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999659	ATA	synonymous	NA	NA	NA	NA
M7	chr12	3984561	12A2p6	cell line	sgMsh2	3984561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	77	0	0	NA	exonic	Efr3b	nonsynonymous SNV	Efr3b:NM_001082483:exon6:c.A608G:p.N203S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9974654	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr12	4290933	12A2p6	cell line	sgMsh2	4290933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	88	8	2	0.25	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon13:c.T2498C:p.L833S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.911667805	1	0.9866214	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr12	4850510	12A2p6	cell line	sgMsh2	4850510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	122	14	3	0.214285714	exonic	Wdcp	nonsynonymous SNV	"Wdcp:NM_001170858:exon2:c.A365G:p.H122R,Wdcp:NM_173416:exon2:c.A365G:p.H122R"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.916226144	1	0.9959534	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	4891350	12A2p6	cell line	sgMsh2	4891350	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	345	63	12	0.19047619	exonic	Ubxn2a	synonymous SNV	Ubxn2a:NM_145441:exon4:c.T255G:p.G85G	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.884317771	1	0.9999154	CAC	synonymous	NA	NA	NA	NA
M7	chr12	5209980	12A2p6	cell line	sgMsh2	5209980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	68	0	0	NA	exonic	Klhl29	synonymous SNV	Klhl29:NM_001164493:exon3:c.A237G:p.E79E	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.825059363	1	0.8751086	CTT	synonymous	NA	NA	NA	NA
M7	chr12	7978239	12A2p6	cell line	sgMsh2	7978239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	148	8	0	0	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon2:c.T109G:p.F37V	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7594979	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	8005953	12A2p6	cell line	sgMsh2	8005953	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	112	14	2	0.142857143	exonic	Apob	synonymous SNV	Apob:NM_009693:exon26:c.T4434C:p.H1478H	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.98004289	1	0.9993248	ATC	synonymous	NA	NA	NA	NA
M7	chr12	8535464	12A2p6	cell line	sgMsh2	8535464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	219	0	0	NA	exonic	Slc7a15	synonymous SNV	"Slc7a15:NM_001038660:exon3:c.T936C:p.A312A,Slc7a15:NM_177802:exon4:c.T156C:p.A52A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.774917634	2	0.6330403	CAG	synonymous	NA	NA	NA	NA
M7	chr12	8710287	12A2p6	cell line	sgMsh2	8710287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	98	344	58	0.168604651	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon5:c.T477C:p.G159G,Pum2:NM_001160220:exon5:c.T477C:p.G159G,Pum2:NM_001160221:exon5:c.T477C:p.G159G,Pum2:NM_001160222:exon5:c.T477C:p.G159G,Pum2:NM_001310519:exon5:c.T477C:p.G159G,Pum2:NM_030723:exon5:c.T477C:p.G159G"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9992286	GTT	synonymous	NA	NA	NA	NA
M7	chr12	8713572	12A2p6	cell line	sgMsh2	8713572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	149	305	57	0.186885246	exonic	Pum2	nonsynonymous SNV	"Pum2:NM_001160219:exon6:c.T728C:p.V243A,Pum2:NM_001160220:exon6:c.T728C:p.V243A,Pum2:NM_001160221:exon6:c.T728C:p.V243A,Pum2:NM_001160222:exon6:c.T728C:p.V243A,Pum2:NM_001310519:exon6:c.T728C:p.V243A,Pum2:NM_030723:exon6:c.T728C:p.V243A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.670075836	2	0.9887571	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	8922249	12A2p6	cell line	sgMsh2	8922249	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	56	760	132	0.173684211	exonic	Laptm4a	nonsynonymous SNV	Laptm4a:NM_008640:exon1:c.T291G:p.C97W	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9917055	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	10391126	12A2p6	cell line	sgMsh2	10391126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	41	18	3	0.166666667	exonic	Rdh14	nonsynonymous SNV	Rdh14:NM_023697:exon1:c.G287A:p.G96E	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9807891	GGG	nonsynonymous	G	5	GGGGG	NA
M7	chr12	11091884	12A2p6	cell line	sgMsh2	11091884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	114	0	0	NA	exonic	Kcns3	synonymous SNV	"Kcns3:NM_001168564:exon3:c.T813C:p.A271A,Kcns3:NM_173417:exon3:c.T813C:p.A271A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.670075836	2	0.9546818	CAG	synonymous	NA	NA	NA	NA
M7	chr12	11242309	12A2p6	cell line	sgMsh2	11242309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	162	28	3	0.107142857	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon14:c.A1673G:p.K558R	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.779475973	1	0.558048	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	11262567	12A2p6	cell line	sgMsh2	11262567	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	197	15	4	0.266666667	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon2:c.A1C:p.M1L	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.911667805	1	0.999518	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr12	11291704	12A2p6	cell line	sgMsh2	11291704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	86	123	30	0.243902439	exonic	Smc6	synonymous SNV	"Smc6:NM_001324476:exon14:c.G1128T:p.R376R,Smc6:NM_025695:exon15:c.G1722T:p.R574R"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.866084414	1	0.9560684	GGG	synonymous	NA	NA	NA	NA
M7	chr12	11456985	12A2p6	cell line	sgMsh2	11456985	A	-	Deletion	Strelka2;Vardict	2	0.2078	154	0	0	NA	exonic	Rad51ap2	frameshift deletion	Rad51ap2:NM_001111118:exon1:c.907delA:p.N305Mfs*23	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.947222849	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M7	chr12	11457116	12A2p6	cell line	sgMsh2	11457116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	145	0	0	NA	exonic	Rad51ap2	synonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1038G:p.V346V	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999463	TAA	synonymous	NA	NA	NA	NA
M7	chr12	11457193	12A2p6	cell line	sgMsh2	11457193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	112	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1115G:p.Y372C	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.911667805	1	0.9935377	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	11457975	12A2p6	cell line	sgMsh2	11457975	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	216	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1897T:p.N633Y	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.592584073	2	0.9999948	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr12	16822106	12A2p6	cell line	sgMsh2	16822106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	265	95	9	0.094736842	exonic	E2f6	nonsynonymous SNV	E2f6:NM_033270:exon5:c.A550T:p.T184S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.920784483	1	0.9999706	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	16965596	12A2p6	cell line	sgMsh2	16965596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	115	321	56	0.174454829	exonic	Rock2	synonymous SNV	Rock2:NM_009072:exon20:c.T2493C:p.N831N	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.989159568	1	0.9995747	ATA	synonymous	NA	NA	NA	NA
M7	chr12	21251157	12A2p6	cell line	sgMsh2	21251157	C	-	Deletion	Strelka2;Vardict	2	0.1429	238	46	2	0.043478261	exonic	Asap2	frameshift deletion	"Asap2:NM_001004364:exon20:c.1967delC:p.P657Rfs*110,Asap2:NM_001098168:exon21:c.1976delC:p.P660Rfs*110,Asap2:NM_001135192:exon21:c.1967delC:p.P657Rfs*110"	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.651386646	NA	NA	ACC	frameshift	NA	NA	NA	-1
M7	chr12	21252746	12A2p6	cell line	sgMsh2	21252746	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	182	96	2	0.020833333	exonic	Asap2	synonymous SNV	"Asap2:NM_001004364:exon21:c.T2022G:p.T674T,Asap2:NM_001098168:exon22:c.T2031G:p.T677T,Asap2:NM_001135192:exon22:c.T2022G:p.T674T"	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.164100205	3	1.00E-09	CTC	synonymous	CTCA	8	CTCACTCA	NA
M7	chr12	21394991	12A2p6	cell line	sgMsh2	21394991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	134	74	23	0.310810811	exonic	Ywhaq	nonsynonymous SNV	Ywhaq:NM_011739:exon4:c.A652G:p.M218V	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.697425871	2	0.9416146	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr12	24044796	12A2p6	cell line	sgMsh2	24044796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	205	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	9030624G23Rik:NM_001256489:exon4:c.T373C:p.C125R	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.893434449	1	0.9988613	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	24680651	12A2p6	cell line	sgMsh2	24680651	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	20	0	0	NA	exonic	Cys1	synonymous SNV	"Cys1:NM_001004455:exon1:c.C258T:p.G86G,Cys1:NM_001161807:exon1:c.C258T:p.G86G,Cys1:NM_138686:exon1:c.C258T:p.G86G"	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9394328	GGC	synonymous	CGGG	8	CGGGCGGG	NA
M7	chr12	24712686	12A2p6	cell line	sgMsh2	24712686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	210	218	34	0.155963303	exonic	Rrm2	nonsynonymous SNV	Rrm2:NM_009104:exon8:c.T827C:p.L276P	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.624492446	2	0.9999444	CTG	nonsynonymous	TGCC	10	TGCCTGCCTG	NA
M7	chr12	26474158	12A2p6	cell line	sgMsh2	26474158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	161	0	0	NA	exonic	Cmpk2	nonsynonymous SNV	Cmpk2:NM_020557:exon3:c.T953C:p.I318T	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.811384346	1	0.8533144	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr12	28631770	12A2p6	cell line	sgMsh2	28631770	T	C	SNV	Mutect2;Vardict	2	0.042	127	83	2	0.024096386	exonic	Rps7	nonsynonymous SNV	Rps7:NM_011300:exon6:c.A361G:p.T121A	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.191450239	3	6.20E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	30119426	12A2p6	cell line	sgMsh2	30119426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	170	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon4:c.T309C:p.R103R	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.852409397	1	0.9787884	CAC	synonymous	NA	NA	NA	NA
M7	chr12	31297648	12A2p6	cell line	sgMsh2	31297648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	83	141	28	0.19858156	exonic	Lamb1	nonsynonymous SNV	Lamb1:NM_008482:exon13:c.T1585C:p.C529R	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.70198421	2	0.7308231	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	31640907	12A2p6	cell line	sgMsh2	31640907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	202	34	5	0.147058824	exonic	Dus4l	synonymous SNV	Dus4l:NM_028002:exon7:c.T744C:p.A248A	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.711100888	2	0.9850819	TAG	synonymous	NA	NA	NA	NA
M7	chr12	31928627	12A2p6	cell line	sgMsh2	31928627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	174	250	51	0.204	exonic	Hbp1	nonsynonymous SNV	"Hbp1:NM_001361928:exon10:c.A1490G:p.K497R,Hbp1:NM_153198:exon10:c.A1520G:p.K507R"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999896	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	31930939	12A2p6	cell line	sgMsh2	31930939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	199	40	0.201005025	exonic	Hbp1	synonymous SNV	"Hbp1:NM_001361928:exon9:c.T1134C:p.R378R,Hbp1:NM_153198:exon9:c.T1164C:p.R388R,Hbp1:NM_177993:exon9:c.T1164C:p.R388R"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.88887611	1	0.9737135	CAC	synonymous	NA	NA	NA	NA
M7	chr12	32848727	12A2p6	cell line	sgMsh2	32848727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	178	314	60	0.191082803	exonic	Nampt	synonymous SNV	Nampt:NM_021524:exon10:c.A1341G:p.K447K	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.656400819	2	0.9983087	AAG	synonymous	NA	NA	NA	NA
M7	chr12	33034997	12A2p6	cell line	sgMsh2	33034997	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	49	0	0	NA	exonic	Cdhr3	nonsynonymous SNV	Cdhr3:NM_001024478:exon19:c.C2419T:p.P807S	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9877115	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	33147779	12A2p6	cell line	sgMsh2	33147779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	69	11	1	0.090909091	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374022:exon1:c.T45C:p.A15A,Atxn7l1:NM_001374023:exon1:c.T45C:p.A15A,Atxn7l1:NM_028139:exon1:c.T45C:p.A15A"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.929901161	1	0.9835536	CTG	synonymous	GCT	11	GCTGCTGCTGC	NA
M7	chr12	33364412	12A2p6	cell line	sgMsh2	33364412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	89	4	0	0	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374024:exon8:c.A1158G:p.S386S,Atxn7l1:NM_001374022:exon10:c.A1530G:p.S510S"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.629050785	2	0.9571648	CAG	synonymous	NA	NA	NA	NA
M7	chr12	34373949	12A2p6	cell line	sgMsh2	34373949	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	158	3	1	0.333333333	exonic	Hdac9	nonsynonymous SNV	"Hdac9:NM_024124:exon12:c.C1645T:p.P549S,Hdac9:NM_001271386:exon14:c.C1717T:p.P573S"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.6177795	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr12	37243715	12A2p6	cell line	sgMsh2	37243715	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.129	104	0	0	NA	exonic	Agmo	frameshift deletion	Agmo:NM_178767:exon2:c.136delT:p.F47Lfs*3	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.588025734	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr12	41452858	12A2p6	cell line	sgMsh2	41452858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	150	1	0	0	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1459G:p.T487A,Lrrn3:NM_010733:exon2:c.A1459G:p.T487A,Lrrn3:NM_001271708:exon3:c.A1459G:p.T487A"	12qB1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999596	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	1	0	0	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999827	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	49385296	12A2p6	cell line	sgMsh2	49385296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	67	169	13	0.076923077	exonic	Foxg1	nonsynonymous SNV	"Foxg1:NM_001160112:exon1:c.A811G:p.T271A,Foxg1:NM_008241:exon2:c.A811G:p.T271A"	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.492300615	2	0.9900502	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	51603211	12A2p6	cell line	sgMsh2	51603211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	156	0	0	NA	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon10:c.A982G:p.N328D,Coch:NM_001198835:exon11:c.A982G:p.N328D"	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.601700751	2	0.9996355	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr12	51768917	12A2p6	cell line	sgMsh2	51768917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	285	310	52	0.167741935	exonic	Hectd1	synonymous SNV	Hectd1:NM_144788:exon25:c.T4371C:p.S1457S	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.902551127	1	0.9999297	CAC	synonymous	NA	NA	NA	NA
M7	chr12	51769296	12A2p6	cell line	sgMsh2	51769296	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	136	69	6	0.086956522	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon25:c.A3992C:p.D1331A	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.83873438	1	0.9446346	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	51956223	12A2p6	cell line	sgMsh2	51956223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	125	111	21	0.189189189	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon5:c.T495C:p.T165T	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.711100888	2	0.8787215	CAG	synonymous	CCCAG	10	CCCAGCCCAG	NA
M7	chr12	51958946	12A2p6	cell line	sgMsh2	51958946	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.206	108	89	14	0.157303371	exonic	Heatr5a	nonsynonymous SNV	Heatr5a:NM_177171:exon3:c.T245G:p.V82G	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.939017839	1	0.9969401	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	53141873	12A2p6	cell line	sgMsh2	53141873	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	195	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon13:c.T6069A:p.S2023R	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.948134517	1	0.9999374	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.257	164	171	37	0.216374269	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M7	chr12	54783488	12A2p6	cell line	sgMsh2	54783488	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	201	417	69	0.165467626	exonic	Snx6	nonsynonymous SNV	Snx6:NM_026998:exon4:c.A185C:p.N62T	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.811384346	1	0.8580365	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr12	55708096	12A2p6	cell line	sgMsh2	55708096	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	94	49	0	0	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001112714:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_019994:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001286263:exon25:c.A3550C:p.T1184P,Ralgapa1:NM_001368814:exon25:c.A4918C:p.T1640P"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.738450922	2	0.5818807	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	59108686	12A2p6	cell line	sgMsh2	59108686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	218	53	8	0.150943396	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001329047:exon4:c.C1187T:p.S396L,Mia2:NM_001368839:exon4:c.C1184T:p.S395L"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.9170577	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr12	59174146	12A2p6	cell line	sgMsh2	59174146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	107	256	31	0.12109375	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001165253:exon17:c.G1414T:p.D472Y,Mia2:NM_001165254:exon17:c.G1381T:p.D461Y,Mia2:NM_001374760:exon19:c.G1513T:p.D505Y,Mia2:NM_146034:exon19:c.G1480T:p.D494Y,Mia2:NM_001329047:exon24:c.G3289T:p.D1097Y,Mia2:NM_001368839:exon24:c.G3286T:p.D1096Y"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.588025734	2	0.9953116	AGA	nonsynonymous	A	5	AAAAA	NA
M7	chr12	61840213	12A2p6	cell line	sgMsh2	61840213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	139	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.G786A:p.T262T,Lrfn5:NM_178714:exon3:c.G786A:p.T262T"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999246	CGT	synonymous	NA	NA	NA	NA
M7	chr12	61843778	12A2p6	cell line	sgMsh2	61843778	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	127	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1852G:p.S618A,Lrfn5:NM_178714:exon4:c.T1852G:p.S618A"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.999851	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	64471562	12A2p6	cell line	sgMsh2	64471562	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	194	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.G3129T:p.K1043N	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.925342822	1	0.9997588	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr12	64473084	12A2p6	cell line	sgMsh2	64473084	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.202	97	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.C1607T:p.A536V	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.920784483	1	0.9921365	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	64957140	12A2p6	cell line	sgMsh2	64957140	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	193	36	5	0.138888889	exonic	Klhl28	frameshift deletion	Klhl28:NM_025707:exon2:c.598delT:p.Y200Mfs*2	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.875201093	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr12	64957332	12A2p6	cell line	sgMsh2	64957332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	245	51	11	0.215686275	exonic	Klhl28	nonsynonymous SNV	Klhl28:NM_025707:exon2:c.A406G:p.N136D	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999989	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	64967733	12A2p6	cell line	sgMsh2	64967733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	194	88	19	0.215909091	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.T1757C:p.V586A,Togaram1:NM_177805:exon1:c.T1757C:p.V586A"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.9101428	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	65016552	12A2p6	cell line	sgMsh2	65016552	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	203	79	18	0.227848101	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_177805:exon17:c.T4640G:p.I1547S,Togaram1:NM_001364325:exon18:c.T4790G:p.I1597S"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.70198421	2	0.9915584	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr12	65043292	12A2p6	cell line	sgMsh2	65043292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	250	87	18	0.206896552	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.T379C:p.Y127H	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.9255241	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	138	119	18	0.151260504	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.939017839	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr12	65056492	12A2p6	cell line	sgMsh2	65056492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	99	100	18	0.18	exonic	Prpf39	synonymous SNV	"Prpf39:NM_177806:exon10:c.A1539G:p.V513V,Prpf39:NM_001374212:exon11:c.A1182G:p.V394V,Prpf39:NM_001374213:exon12:c.A1182G:p.V394V"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.683750854	2	0.8844118	TAC	synonymous	NA	NA	NA	NA
M7	chr12	65153830	12A2p6	cell line	sgMsh2	65153830	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	116	49	11	0.224489796	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon6:c.T1271A:p.I424N	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.743009261	2	0.6519398	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	126	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9998424	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	69340984	12A2p6	cell line	sgMsh2	69340984	T	-	Deletion	Strelka2;Vardict	2	0.4	25	73	7	0.095890411	exonic	Nemf	frameshift deletion	Nemf:NM_025441:exon14:c.1325delA:p.K442Sfs*17	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M7	chr12	69590736	12A2p6	cell line	sgMsh2	69590736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	113	50	9	0.18	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon20:c.A3296G:p.D1099G	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.665517497	2	0.9592679	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	69826325	12A2p6	cell line	sgMsh2	69826325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	128	115	21	0.182608696	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon18:c.A1406G:p.Q469R	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.615375768	2	0.9966308	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	69969116	12A2p6	cell line	sgMsh2	69969116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	131	519	103	0.198458574	exonic	Sav1	nonsynonymous SNV	Sav1:NM_022028:exon4:c.G907A:p.A303T	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.765800956	2	0.5084062	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr12	69976042	12A2p6	cell line	sgMsh2	69976042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	192	585	111	0.18974359	exonic	Sav1	synonymous SNV	Sav1:NM_022028:exon3:c.G735A:p.E245E	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.952692856	1	0.9999453	ACT	synonymous	NA	NA	NA	NA
M7	chr12	70014794	12A2p6	cell line	sgMsh2	70014794	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	124	20	4	0.2	exonic	Nin	nonsynonymous SNV	Nin:NM_001081453:exon29:c.A6295T:p.N2099Y	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.724775905	2	0.8100371	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	70197745	12A2p6	cell line	sgMsh2	70197745	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	155	4	2	0.5	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon13:c.A1535T:p.Y512F	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.51509231	2	0.9999927	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr12	70956648	12A2p6	cell line	sgMsh2	70956648	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	152	362	60	0.165745856	exonic	Actr10	nonsynonymous SNV	Actr10:NM_019785:exon10:c.A763C:p.I255L	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999639	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	72101985	12A2p6	cell line	sgMsh2	72101985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	131	0	0	NA	exonic	Ccdc175	nonsynonymous SNV	Ccdc175:NM_028687:exon20:c.A2398G:p.R800G	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.670075836	2	0.9768372	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	72470286	12A2p6	cell line	sgMsh2	72470286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	229	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon15:c.T1808C:p.V603A,Lrrc9:NM_001142729:exon15:c.T1811C:p.V604A,Lrrc9:NM_030070:exon15:c.T1811C:p.V604A"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.729334244	2	0.9765764	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	72653207	12A2p6	cell line	sgMsh2	72653207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	53	43	5	0.11627907	exonic	Dhrs7	nonsynonymous SNV	Dhrs7:NM_025522:exon5:c.T650C:p.L217P	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9901818	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	73109092	12A2p6	cell line	sgMsh2	73109092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	165	3	0	0	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.A1100C:p.N367T,Six4:NM_001362272:exon3:c.A1076C:p.N359T"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.569792378	2	0.9999556	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr12	73168143	12A2p6	cell line	sgMsh2	73168143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	109	177	25	0.141242938	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon2:c.T233C:p.V78A	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.881318	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	73341738	12A2p6	cell line	sgMsh2	73341738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	225	14	3	0.214285714	exonic	Slc38a6	nonsynonymous SNV	Slc38a6:NM_001037717:exon10:c.A725G:p.K242R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.670075836	2	0.9994896	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	73975036	12A2p6	cell line	sgMsh2	73975036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	100	47	11	0.234042553	exonic	Snapc1	nonsynonymous SNV	Snapc1:NM_178392:exon8:c.A908G:p.Q303R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.847851058	1	0.9416327	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	75716391	12A2p6	cell line	sgMsh2	75716391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	260	37	5	0.135135135	exonic	Sgpp1	synonymous SNV	Sgpp1:NM_030750:exon3:c.T1015C:p.L339L	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.9995033	AAC	synonymous	NA	NA	NA	NA
M7	chr12	75979847	12A2p6	cell line	sgMsh2	75979847	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	79	33	8	0.242424242	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon52:c.T10448C:p.L3483P	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.733892583	2	0.5319122	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	76145477	12A2p6	cell line	sgMsh2	76145477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	121	0	0	NA	exonic	Esr2	nonsynonymous SNV	"Esr2:NM_010157:exon5:c.A776G:p.H259R,Esr2:NM_207707:exon5:c.A776G:p.H259R"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.60625909	2	0.9963771	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr12	76270450	12A2p6	cell line	sgMsh2	76270450	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	172	78	0	0	exonic	Mthfd1	nonsynonymous SNV	Mthfd1:NM_138745:exon2:c.C74G:p.T25S	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999884	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr12	76349846	12A2p6	cell line	sgMsh2	76349846	G	A	SNV	Mutect2;Vardict	2	0.035	121	24	0	0	exonic	Zbtb25	nonsynonymous SNV	"Zbtb25:NM_001172104:exon3:c.C601T:p.P201S,Zbtb25:NM_028356:exon3:c.C601T:p.P201S"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.159541866	3	1.49E-09	GGG	nonsynonymous	G	5	GGGGG	NA
M7	chr12	76385880	12A2p6	cell line	sgMsh2	76385880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	323	114	11	0.096491228	exonic	Zbtb1	synonymous SNV	"Zbtb1:NM_001364323:exon2:c.A639G:p.G213G,Zbtb1:NM_178744:exon2:c.A639G:p.G213G"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.939017839	1	0.9999993	GAC	synonymous	NA	NA	NA	NA
M7	chr12	76438455	12A2p6	cell line	sgMsh2	76438455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	113	3	0	0	exonic	Ppp1r36	synonymous SNV	Ppp1r36:NM_001163103:exon10:c.A951G:p.K317K	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.948134517	1	0.9981383	AAG	synonymous	A	5	AAAAA	NA
M7	chr12	76583325	12A2p6	cell line	sgMsh2	76583325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	78	3	1	0.333333333	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon36:c.A6890G:p.K2297R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.984601229	1	0.996587	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	76623183	12A2p6	cell line	sgMsh2	76623183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	75	3	1	0.333333333	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon12:c.T1370C:p.V457A	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.806826007	1	0.8288536	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	78680393	12A2p6	cell line	sgMsh2	78680393	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	105	32	2	0.0625	exonic	Gphn	nonsynonymous SNV	"Gphn:NM_145965:exon21:c.G2087T:p.R696M,Gphn:NM_172952:exon22:c.G2078T:p.R693M"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.770359295	1	0.6067112	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr12	79182818	12A2p6	cell line	sgMsh2	79182818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	104	264	53	0.200757576	exonic	Rdh11	nonsynonymous SNV	"Rdh11:NM_001362270:exon5:c.T299C:p.V100A,Rdh11:NM_001362269:exon6:c.T632C:p.V211A,Rdh11:NM_021557:exon6:c.T680C:p.V227A"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.866084414	1	0.9673449	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	80174498	12A2p6	cell line	sgMsh2	80174498	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	247	713	125	0.175315568	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon15:c.A1780C:p.T594P,Actn1:NM_001379075:exon15:c.A1780C:p.T594P,Actn1:NM_001379076:exon15:c.A1585C:p.T529P,Actn1:NM_134156:exon15:c.A1780C:p.T594P"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.715659227	2	0.9942262	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	80174521	12A2p6	cell line	sgMsh2	80174521	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	246	840	16	0.019047619	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon15:c.T1757C:p.M586T,Actn1:NM_001379075:exon15:c.T1757C:p.M586T,Actn1:NM_001379076:exon15:c.T1562C:p.M521T,Actn1:NM_134156:exon15:c.T1757C:p.M586T"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.14130851	3	1	CAT	nonsynonymous	TGCC	8	TGCCTGCC	NA
M7	chr12	80490883	12A2p6	cell line	sgMsh2	80490883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	165	25	4	0.16	exonic	Exd2	synonymous SNV	Exd2:NM_133798:exon6:c.T1239C:p.I413I	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.893434449	1	0.9968837	TTG	synonymous	NA	NA	NA	NA
M7	chr12	80967620	12A2p6	cell line	sgMsh2	80967620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	60	0	0	NA	exonic	Slc10a1	nonsynonymous SNV	"Slc10a1:NM_001177561:exon1:c.A325G:p.T109A,Slc10a1:NM_011387:exon1:c.A325G:p.T109A,Slc10a1:NM_001361972:exon2:c.A325G:p.T109A"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.897992788	1	0.9608687	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	81724281	12A2p6	cell line	sgMsh2	81724281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	116	22	4	0.181818182	exonic	Map3k9	synonymous SNV	Map3k9:NM_001174107:exon10:c.A2532G:p.Q844Q	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.847851058	1	0.9511395	ATT	synonymous	NA	NA	NA	NA
M7	chr12	81981013	12A2p6	cell line	sgMsh2	81981013	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	97	26	7	0.269230769	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon26:c.T4850C:p.L1617P	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9991836	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	83555228	12A2p6	cell line	sgMsh2	83555228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	212	49	9	0.183673469	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon4:c.T209C:p.V70A,Zfyve1:NM_001359166:exon7:c.T1454C:p.V485A,Zfyve1:NM_183154:exon7:c.T1454C:p.V485A,Zfyve1:NM_001359167:exon8:c.T1454C:p.V485A"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999988	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	83784299	12A2p6	cell line	sgMsh2	83784299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	92	3	0	0	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon23:c.A3161G:p.D1054G,Papln:NM_001205343:exon24:c.A3227G:p.D1076G"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9989161	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	83786790	12A2p6	cell line	sgMsh2	83786790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	196	4	1	0.25	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon25:c.T3413C:p.L1138P,Papln:NM_001205343:exon26:c.T3479C:p.L1160P"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.939017839	1	0.9998981	CTG	nonsynonymous	GCCT	13	GCCTGCCTCCTGC	NA
M7	chr12	83952501	12A2p6	cell line	sgMsh2	83952501	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	181	37	4	0.108108108	exonic	Riox1	stoploss	Riox1:NM_023633:exon1:c.T1810A:p.X604K	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.610817429	2	0.9998709	TTA	nonsynonymous	AGTT	8	AGTTAGTT	NA
M7	chr12	84414585	12A2p6	cell line	sgMsh2	84414585	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	144	2	1	0.5	exonic	Bbof1	synonymous SNV	Bbof1:NM_028377:exon4:c.T381C:p.Y127Y	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.209683595	3	4.44E-09	ATG	synonymous	NA	NA	NA	NA
M7	chr12	84996859	12A2p6	cell line	sgMsh2	84996859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	52	30	5	0.166666667	exonic	Ylpm1	nonsynonymous SNV	"Ylpm1:NM_001347421:exon1:c.T370C:p.Y124H,Ylpm1:NM_178363:exon1:c.T370C:p.Y124H"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9896146	GTA	nonsynonymous	AGC	11	AGCAGCAGCAG	NA
M7	chr12	85042138	12A2p6	cell line	sgMsh2	85042138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	92	10	0.108695652	exonic	Ylpm1	synonymous SNV	"Ylpm1:NM_001347421:exon8:c.T2916C:p.R972R,Ylpm1:NM_178363:exon9:c.T5034C:p.R1678R"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.834176041	1	0.9608312	GTG	synonymous	NA	NA	NA	NA
M7	chr12	85139623	12A2p6	cell line	sgMsh2	85139623	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	88	0	0	NA	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364317:exon6:c.A662T:p.Y221F,Rps6kl1:NM_001364315:exon7:c.A710T:p.Y237F,Rps6kl1:NM_001364316:exon7:c.A680T:p.Y227F,Rps6kl1:NM_146244:exon7:c.A710T:p.Y237F"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.779475973	1	0.7028119	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	86680169	12A2p6	cell line	sgMsh2	86680169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	95	4	0	0	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon1:c.A182T:p.E61V	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.770359295	1	0.6330356	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	86720492	12A2p6	cell line	sgMsh2	86720492	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	69	3	0	0	exonic	Angel1	nonsynonymous SNV	Angel1:NM_144524:exon5:c.T1109A:p.L370Q	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.770359295	1	0.6975842	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	87077206	12A2p6	cell line	sgMsh2	87077206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	337	0	0	NA	exonic	Tmem63c	nonsynonymous SNV	"Tmem63c:NM_001361704:exon17:c.T1457C:p.L486P,Tmem63c:NM_001361705:exon17:c.T1457C:p.L486P,Tmem63c:NM_172583:exon18:c.T1457C:p.L486P"	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.633609124	2	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	88795504	12A2p6	cell line	sgMsh2	88795504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	189	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.G320A:p.S107N	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.943576178	1	0.9998965	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	89348299	12A2p6	cell line	sgMsh2	89348299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	131	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon7:c.A979G:p.M327V,Nrxn3:NM_001198587:exon8:c.A2098G:p.M700V"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.943576178	1	0.9989448	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	90331934	12A2p6	cell line	sgMsh2	90331934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	159	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_001252074:exon7:c.G1228T:p.A410S,Nrxn3:NM_001198587:exon20:c.G4240T:p.A1414S"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.83873438	1	0.9545595	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	90332176	12A2p6	cell line	sgMsh2	90332176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	99	0	0	NA	exonic	Nrxn3	synonymous SNV	"Nrxn3:NM_001252074:exon7:c.T1470C:p.S490S,Nrxn3:NM_001198587:exon20:c.T4482C:p.S1494S,Nrxn3:NM_172544:exon20:c.T3069C:p.S1023S"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.884317771	1	0.9788901	GTA	synonymous	NA	NA	NA	NA
M7	chr12	91537344	12A2p6	cell line	sgMsh2	91537344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	110	0	0	NA	exonic	Tshr	nonsynonymous SNV	Tshr:NM_011648:exon10:c.A1055G:p.Y352C	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.683750854	2	0.9197927	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	91648453	12A2p6	cell line	sgMsh2	91648453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	156	36	5	0.138888889	exonic	Ston2	nonsynonymous SNV	Ston2:NM_175367:exon5:c.G1180T:p.G394C	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.815942685	1	0.8772167	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr12	98435226	12A2p6	cell line	sgMsh2	98435226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	103	0	0	NA	exonic	Kcnk10	nonsynonymous SNV	"Kcnk10:NM_001316664:exon7:c.T1147C:p.F383L,Kcnk10:NM_001316665:exon7:c.T1198C:p.F400L,Kcnk10:NM_029911:exon7:c.T1189C:p.F397L"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.879759432	1	0.977859	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	144	27	6	0.222222222	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.925342822	1	0.9986376	ATG	synonymous	NA	NA	NA	NA
M7	chr12	98783698	12A2p6	cell line	sgMsh2	98783698	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	104	227	44	0.193832599	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001160108:exon3:c.T586A:p.C196S,Zc3h14:NM_001364405:exon9:c.T931A:p.C311S,Zc3h14:NM_001160107:exon10:c.T1396A:p.C466S,Zc3h14:NM_001364404:exon10:c.T1006A:p.C336S,Zc3h14:NM_001008506:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364402:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364401:exon12:c.T1789A:p.C597S,Zc3h14:NM_001364403:exon12:c.T1399A:p.C467S,Zc3h14:NM_001364400:exon13:c.T1864A:p.C622S,Zc3h14:NM_029334:exon13:c.T1864A:p.C622S"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.911667805	1	0.9917593	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	101058739	12A2p6	cell line	sgMsh2	101058739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	145	162	29	0.179012346	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A500G:p.E167G,Ppp4r3a:NM_211355:exon4:c.A500G:p.E167G"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.638167463	2	0.9966033	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	101541507	12A2p6	cell line	sgMsh2	101541507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	124	0	0	NA	exonic	Catsperb	nonsynonymous SNV	Catsperb:NM_173023:exon16:c.T1532C:p.F511S	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.852409397	1	0.9619386	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	101651104	12A2p6	cell line	sgMsh2	101651104	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	73	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon11:c.T1247A:p.V416E,Tc2n:NM_028924:exon11:c.T1247A:p.V416E"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.948134517	1	0.9903267	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	101757302	12A2p6	cell line	sgMsh2	101757302	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.03	150	0	0	NA	exonic	Fbln5	nonsynonymous SNV	"Fbln5:NM_001361987:exon10:c.T1178C:p.I393T,Fbln5:NM_011812:exon10:c.T1139C:p.I380T"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.136750171	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	104	92	21	0.22826087	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.999451	TTC	synonymous	NA	NA	NA	NA
M7	chr12	102785347	12A2p6	cell line	sgMsh2	102785347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	200	87	14	0.16091954	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon11:c.C3157T:p.R1053W,Btbd7:NM_172806:exon12:c.C3157T:p.R1053W"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.897992788	1	0.9990134	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr12	103169710	12A2p6	cell line	sgMsh2	103169710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	141	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon45:c.A7229G:p.D2410G	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.647284141	2	0.9939424	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	103173515	12A2p6	cell line	sgMsh2	103173515	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	233	0	0	NA	exonic	Unc79	synonymous SNV	Unc79:NM_001081017:exon47:c.A7533G:p.S2511S	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.852409397	1	0.9905876	CAA	synonymous	NA	NA	NA	NA
M7	chr12	103330500	12A2p6	cell line	sgMsh2	103330500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	153	0	0	NA	exonic	Asb2	synonymous SNV	"Asb2:NM_001374764:exon5:c.G753A:p.T251T,Asb2:NM_023049:exon7:c.G897A:p.T299T"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999659	GCG	synonymous	NA	NA	NA	NA
M7	chr12	103424065	12A2p6	cell line	sgMsh2	103424065	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	141	195	37	0.18974359	exonic	Ddx24	nonsynonymous SNV	"Ddx24:NM_001159502:exon2:c.A666T:p.K222N,Ddx24:NM_001364162:exon2:c.A528T:p.K176N,Ddx24:NM_001364163:exon2:c.A528T:p.K176N,Ddx24:NM_020494:exon2:c.A528T:p.K176N"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.6459697	ATT	nonsynonymous	T	5	TTTTT	NA
M7	chr12	103648638	12A2p6	cell line	sgMsh2	103648638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	224	0	0	NA	exonic	Serpina6	synonymous SNV	Serpina6:NM_007618:exon4:c.T948C:p.D316D	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.834176041	1	0.9654686	AAT	synonymous	NA	NA	NA	NA
M7	chr12	104038223	12A2p6	cell line	sgMsh2	104038223	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	153	0	0	NA	exonic	Serpina12	nonsynonymous SNV	Serpina12:NM_026535:exon2:c.G149A:p.R50Q	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.774917634	1	0.5258086	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr12	104103241	12A2p6	cell line	sgMsh2	104103241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	154	0	0	NA	exonic	Serpina5	synonymous SNV	Serpina5:NM_172953:exon3:c.A711G:p.E237E	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7560976	AAG	synonymous	NA	NA	NA	NA
M7	chr12	104115987	12A2p6	cell line	sgMsh2	104115987	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	187	0	0	NA	exonic	Serpina3a	synonymous SNV	Serpina3a:NM_001167705:exon2:c.T18G:p.A6A	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.999995	CTC	synonymous	NA	NA	NA	NA
M7	chr12	104130656	12A2p6	cell line	sgMsh2	104130656	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	210	0	0	NA	exonic	Serpina3b	nonsynonymous SNV	Serpina3b:NM_173024:exon2:c.G195T:p.K65N	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.168658544	3	1	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr12	104696556	12A2p6	cell line	sgMsh2	104696556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	82	49	14	0.285714286	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon23:c.T4765C:p.L1589L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.902551127	1	0.98008	AAG	synonymous	NA	NA	NA	NA
M7	chr12	104696697	12A2p6	cell line	sgMsh2	104696697	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	126	36	4	0.111111111	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.G4624A:p.D1542N	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.756684278	2	0.5770535	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr12	104729211	12A2p6	cell line	sgMsh2	104729211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	191	60	16	0.266666667	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon5:c.T460C:p.L154L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.879759432	1	0.9964994	AAG	synonymous	NA	NA	NA	NA
M7	chr12	105032886	12A2p6	cell line	sgMsh2	105032886	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	55	97	27	0.278350515	exonic	Glrx5	nonsynonymous SNV	Glrx5:NM_028419:exon1:c.T187G:p.C63G	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.98004289	1	0.9879018	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	105164467	12A2p6	cell line	sgMsh2	105164467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	187	0	0	NA	exonic	Tcl1b1	synonymous SNV	Tcl1b1:NM_013773:exon2:c.T208C:p.L70L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7368201	CTT	synonymous	NA	NA	NA	NA
M7	chr12	105809376	12A2p6	cell line	sgMsh2	105809376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	315	377	79	0.209549072	exonic	Papola	nonsynonymous SNV	"Papola:NM_001347440:exon8:c.T641C:p.V214A,Papola:NM_011112:exon8:c.T641C:p.V214A"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.897992788	1	0.9999535	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	108199358	12A2p6	cell line	sgMsh2	108199358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	268	81	16	0.197530864	exonic	Ccnk	synonymous SNV	Ccnk:NM_009832:exon11:c.A1098G:p.P366P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.765800956	2	0.8518661	CAT	synonymous	CACC	8	CACCCACC	NA
M7	chr12	108357507	12A2p6	cell line	sgMsh2	108357507	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	78	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon11:c.A1001C:p.E334A	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.879759432	1	0.9629795	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr12	108806507	12A2p6	cell line	sgMsh2	108806507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	154	374	77	0.205882353	exonic	Yy1	synonymous SNV	Yy1:NM_009537:exon2:c.A708T:p.T236T	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.656400819	2	0.995051	CAG	synonymous	NA	NA	NA	NA
M7	chr12	109027407	12A2p6	cell line	sgMsh2	109027407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	40	9	1	0.111111111	exonic	Wdr25	synonymous SNV	Wdr25:NM_177602:exon7:c.T1548C:p.P516P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9796905	CTG	synonymous	NA	NA	NA	NA
M7	chr12	110639846	12A2p6	cell line	sgMsh2	110639846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	92	70	16	0.228571429	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon36:c.T7349C:p.L2450P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.815942685	1	0.8604317	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	110855054	12A2p6	cell line	sgMsh2	110855054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	48	18	7	0.388888889	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.A301G:p.T101A,Zfp839:NM_028365:exon2:c.A301G:p.T101A"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.952692856	1	0.9748768	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	110855303	12A2p6	cell line	sgMsh2	110855303	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	54	13	5	0.384615385	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.G550A:p.A184T,Zfp839:NM_028365:exon2:c.G550A:p.A184T"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.665517497	2	0.661654	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	110860971	12A2p6	cell line	sgMsh2	110860971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	65	5	0	0	exonic	Zfp839	nonsynonymous SNV	Zfp839:NM_028365:exon3:c.A1295G:p.D432G	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9950055	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	110926319	12A2p6	cell line	sgMsh2	110926319	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	169	9	1	0.111111111	exonic	Tecpr2	nonsynonymous SNV	"Tecpr2:NM_001289510:exon6:c.T794G:p.V265G,Tecpr2:NM_001081057:exon7:c.T794G:p.V265G"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.738450922	2	0.8671866	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr12	111318810	12A2p6	cell line	sgMsh2	111318810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	153	152	19	0.125	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon15:c.A2059G:p.R687G	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999659	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	111669725	12A2p6	cell line	sgMsh2	111669725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	76	1	0	0	exonic	Ckb	synonymous SNV	Ckb:NM_021273:exon8:c.T984C:p.A328A	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9973179	CAG	synonymous	NA	NA	NA	NA
M7	chr12	111831590	12A2p6	cell line	sgMsh2	111831590	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	69	35	8	0.228571429	exonic	Ppp1r13b	synonymous SNV	Ppp1r13b:NM_011625:exon15:c.C2892T:p.V964V	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.642725802	2	0.8542553	GGA	synonymous	NA	NA	NA	NA
M7	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	77	38	5	0.131578947	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.975484551	1	0.9955791	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr12	111963295	12A2p6	cell line	sgMsh2	111963295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	157	573	136	0.237347295	exonic	Atp5mpl	nonsynonymous SNV	"Atp5mpl:NM_001361914:exon2:c.T59C:p.V20A,Atp5mpl:NM_027360:exon2:c.T59C:p.V20A"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999728	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	111979631	12A2p6	cell line	sgMsh2	111979631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	167	0	0	NA	exonic	Rd3l	nonsynonymous SNV	Rd3l:NM_001127685:exon3:c.G413A:p.G138D	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.984601229	1	0.9999671	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr12	112123319	12A2p6	cell line	sgMsh2	112123319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	99	0	0	NA	exonic	Aspg	synonymous SNV	Aspg:NM_001081169:exon12:c.T1290C:p.S430S	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9992711	GTG	synonymous	NA	NA	NA	NA
M7	chr12	112600285	12A2p6	cell line	sgMsh2	112600285	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	57	34	2	0.058823529	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon2:c.G283A:p.A95T,Inf2:NM_198411:exon2:c.G283A:p.A95T"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	2	1	1	0.9921594	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr12	112914235	12A2p6	cell line	sgMsh2	112914235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	81	25	3	0.12	exonic	Jag2	synonymous SNV	Jag2:NM_010588:exon14:c.T1797C:p.G599G	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.65184248	2	0.8944493	CAC	synonymous	NA	NA	NA	NA
M7	chr12	113068082	12A2p6	cell line	sgMsh2	113068082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	78	22	6	0.272727273	exonic	Pacs2	nonsynonymous SNV	"Pacs2:NM_001291445:exon18:c.A1907G:p.D636G,Pacs2:NM_001081170:exon19:c.A1997G:p.D666G,Pacs2:NM_001291444:exon19:c.A2003G:p.D668G"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.660959158	2	0.8566912	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr12	113130589	12A2p6	cell line	sgMsh2	113130589	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	104	256	40	0.15625	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001364622:exon11:c.A1022C:p.N341T,Mta1:NM_001364623:exon11:c.A1022C:p.N341T,Mta1:NM_054081:exon11:c.A1022C:p.N341T,Mta1:NM_001346696:exon12:c.A1073C:p.N358T,Mta1:NM_001364620:exon12:c.A1073C:p.N358T,Mta1:NM_001364621:exon12:c.A1073C:p.N358T"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.756684278	1	0.5060324	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr12	113490367	12A2p6	cell line	sgMsh2	113490367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	372	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T803C:p.V268A	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.9990676	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr12	116059469	12A2p6	cell line	sgMsh2	116059469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	139	57	11	0.192982456	exonic	Zfp386	nonsynonymous SNV	"Zfp386:NM_001004066:exon3:c.A806T:p.E269V,Zfp386:NM_019565:exon3:c.A701T:p.E234V"	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.729334244	2	0.8365403	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr12	116841323	12A2p6	cell line	sgMsh2	116841323	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon5:c.T457A:p.Y153N	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.970926212	1	0.9999854	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr12	117233326	12A2p6	cell line	sgMsh2	117233326	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	175	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon17:c.G2419T:p.G807C	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.879759432	1	0.9950947	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr12	118261795	12A2p6	cell line	sgMsh2	118261795	C	A	SNV	Mutect2;Vardict	2	0.049	85	6	0	0	exonic	Sp4	nonsynonymous SNV	"Sp4:NM_001166385:exon4:c.G1833T:p.E611D,Sp4:NM_009239:exon4:c.G1833T:p.E611D"	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.223358612	3	0.9999617	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr12	118298898	12A2p6	cell line	sgMsh2	118298898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	209	17	3	0.176470588	exonic	Sp4	nonsynonymous SNV	"Sp4:NM_001166385:exon3:c.A1412G:p.Q471R,Sp4:NM_009239:exon3:c.A1412G:p.Q471R"	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.9969805	CTG	nonsynonymous	CTGGAC	12	CTGGACCTGGAC	NA
M7	chr12	118927422	12A2p6	cell line	sgMsh2	118927422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	83	0	0	NA	exonic	Abcb5	nonsynonymous SNV	Abcb5:NM_029961:exon13:c.A1339T:p.T447S	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.102505121	NA	1	1	1	0.9981953	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	3577004	12A2p6	cell line	sgMsh2	3577004	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	225	60	12	0.2	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon14:c.G2615A:p.S872N,Tasor2:NM_134063:exon14:c.G2945A:p.S982N"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.770359295	2	0.7124944	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	3588492	12A2p6	cell line	sgMsh2	3588492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	110	65	12	0.184615385	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon11:c.T1238C:p.L413P,Tasor2:NM_134063:exon11:c.T1238C:p.L413P"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	6577459	12A2p6	cell line	sgMsh2	6577459	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	83	223	59	0.264573991	exonic	Pitrm1	synonymous SNV	"Pitrm1:NM_001360106:exon24:c.T2709G:p.A903A,Pitrm1:NM_145131:exon24:c.T2712G:p.A904A"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	CTT	synonymous	NA	NA	NA	NA
M7	chr13	8847644	12A2p6	cell line	sgMsh2	8847644	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	141	35	7	0.2	exonic	Wdr37	nonsynonymous SNV	"Wdr37:NM_001039388:exon7:c.T575A:p.L192H,Wdr37:NM_172445:exon7:c.T575A:p.L192H"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	8991761	12A2p6	cell line	sgMsh2	8991761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	92	167	39	0.233532934	exonic	Gtpbp4	synonymous SNV	Gtpbp4:NM_027000:exon4:c.T414C:p.C138C	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9284378	TAC	synonymous	NA	NA	NA	NA
M7	chr13	9575459	12A2p6	cell line	sgMsh2	9575459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	143	11	1	0.090909091	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon16:c.A1854G:p.I618M	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	9690368	12A2p6	cell line	sgMsh2	9690368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	182	49	15	0.306122449	exonic	Zmynd11	synonymous SNV	"Zmynd11:NM_001347479:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347480:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347470:exon12:c.T1305C:p.S435S,Zmynd11:NM_001347471:exon12:c.T1305C:p.S435S"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	TAC	synonymous	NA	NA	NA	NA
M7	chr13	11587341	12A2p6	cell line	sgMsh2	11587341	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	107	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon94:c.A13654G:p.R4552G	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	CTG	nonsynonymous	G	5	GGGGG	NA
M7	chr13	11595649	12A2p6	cell line	sgMsh2	11595649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	120	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon90:c.T12290C:p.V4097A	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	12212733	12A2p6	cell line	sgMsh2	12212733	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	170	15	2	0.133333333	exonic	Mtr	nonsynonymous SNV	Mtr:NM_001081128:exon21:c.A2206T:p.I736F	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.638167463	2	0.9990309	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr13	12418135	12A2p6	cell line	sgMsh2	12418135	A	G	SNV	Mutect2;Vardict	2	0.053	81	41	0	0	exonic	Heatr1	nonsynonymous SNV	Heatr1:NM_144835:exon24:c.A3365G:p.Q1122R	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.241591968	3	0.9997719	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	12429781	12A2p6	cell line	sgMsh2	12429781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	221	30	7	0.233333333	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon33:c.T4611C:p.G1537G	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999993	GTG	synonymous	GTG	8	GTGGTGGT	NA
M7	chr13	13730347	12A2p6	cell line	sgMsh2	13730347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	123	28	2	0.071428571	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon42:c.A9608G:p.K3203R	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9828024	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	13759442	12A2p6	cell line	sgMsh2	13759442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	115	22	5	0.227272727	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon48:c.T10724C:p.I3575T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr13	14009654	12A2p6	cell line	sgMsh2	14009654	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	122	42	10	0.238095238	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon7:c.A638G:p.N213S	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.756684278	2	0.5621304	GTT	nonsynonymous	TGTTT	10	TGTTTTGTTT	NA
M7	chr13	14014753	12A2p6	cell line	sgMsh2	14014753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	119	49	12	0.244897959	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon5:c.A442T:p.I148F	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr13	14316041	12A2p6	cell line	sgMsh2	14316041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	131	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.G2365A:p.A789T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9989448	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr13	15660914	12A2p6	cell line	sgMsh2	15660914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	58	6	0	0	exonic	Gli3	nonsynonymous SNV	Gli3:NM_008130:exon9:c.A1276G:p.T426A	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9925886	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	16027074	12A2p6	cell line	sgMsh2	16027074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	42	19	0.452380952	exonic	Inhba	nonsynonymous SNV	Inhba:NM_008380:exon5:c.A1220C:p.N407T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.8973038	AAC	nonsynonymous	CAT	8	CATCATCA	NA
M7	chr13	18378517	12A2p6	cell line	sgMsh2	18378517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	53	0	0	NA	exonic	Pou6f2	synonymous SNV	Pou6f2:NM_175006:exon2:c.A231G:p.T77T	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	GTG	synonymous	NA	NA	NA	NA
M7	chr13	19630076	12A2p6	cell line	sgMsh2	19630076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	132	0	0	NA	exonic	Sfrp4	nonsynonymous SNV	Sfrp4:NM_016687:exon5:c.C802T:p.L268F	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.6410513	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	19729324	12A2p6	cell line	sgMsh2	19729324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	109	0	0	NA	exonic	Gpr141b	nonsynonymous SNV	Gpr141b:NM_175688:exon2:c.A557G:p.N186S	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995866	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	19729389	12A2p6	cell line	sgMsh2	19729389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	103	0	0	NA	exonic	Gpr141b	synonymous SNV	Gpr141b:NM_175688:exon2:c.A492G:p.L164L	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9831367	GTA	synonymous	A	8	AAAAAAAA	NA
M7	chr13	20979491	12A2p6	cell line	sgMsh2	20979491	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	194	0	0	NA	exonic	Aoah	frameshift deletion	Aoah:NM_012054:exon13:c.963delT:p.L322fs*0	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7	chr13	21364017	12A2p6	cell line	sgMsh2	21364017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	81	24	5	0.208333333	exonic	Zscan12	nonsynonymous SNV	Zscan12:NM_016684:exon2:c.A368G:p.D123G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.971817	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	22179070	12A2p6	cell line	sgMsh2	22179070	T	C	SNV	Mutect2;Vardict	2	0.024	459	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.A513G:p.P171P	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.109400137	3	1	TTG	synonymous	NA	NA	NA	NA
M7	chr13	22293996	12A2p6	cell line	sgMsh2	22293996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	261	0	0	NA	exonic	Vmn1r196	synonymous SNV	Vmn1r196:NM_001167541:exon1:c.T804C:p.T268T	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M7	chr13	22328104	12A2p6	cell line	sgMsh2	22328104	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	246	0	0	NA	exonic	Vmn1r197	nonsynonymous SNV	Vmn1r197:NM_134244:exon1:c.T194C:p.I65T	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.118516815	3	1	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr13	22524506	12A2p6	cell line	sgMsh2	22524506	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	418	0	0	NA	exonic	Vmn1r203	synonymous SNV	Vmn1r203:NM_134236:exon1:c.T456C:p.S152S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.104841798	3	1	GTA	synonymous	NA	NA	NA	NA
M7	chr13	22524511	12A2p6	cell line	sgMsh2	22524511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	409	0	0	NA	exonic	Vmn1r203	nonsynonymous SNV	Vmn1r203:NM_134236:exon1:c.A461G:p.N154S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	1.02E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	23099803	12A2p6	cell line	sgMsh2	23099803	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	169	0	0	NA	exonic	Vmn1r216	nonsynonymous SNV	Vmn1r216:NM_134245:exon1:c.A655G:p.R219G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.241591968	3	1.13E-08	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	23114278	12A2p6	cell line	sgMsh2	23114278	A	G	SNV	Mutect2;Vardict	2	0.018	519	0	0	NA	exonic	Vmn1r217	synonymous SNV	Vmn1r217:NM_134239:exon1:c.T453C:p.S151S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.082050102	3	1	TAC	synonymous	NA	NA	NA	NA
M7	chr13	23163522	12A2p6	cell line	sgMsh2	23163522	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	169	0	0	NA	exonic	Vmn1r219	nonsynonymous SNV	Vmn1r219:NM_134238:exon1:c.T880G:p.C294G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr13	23184250	12A2p6	cell line	sgMsh2	23184250	C	-	Deletion	Mutect2;Vardict	2	0.027	351	0	0	NA	exonic	Vmn1r220	frameshift deletion	Vmn1r220:NM_134237:exon1:c.275delG:p.G92Afs*49	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.123075154	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	263	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	23478418	12A2p6	cell line	sgMsh2	23478418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	136	3	0	0	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon7:c.T1334C:p.I445T,Btn2a2:NM_001289615:exon8:c.T1361C:p.I454T,Btn2a2:NM_175938:exon8:c.T1361C:p.I454T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	23543231	12A2p6	cell line	sgMsh2	23543231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	249	7	2	0.285714286	exonic	H2bc9	nonsynonymous SNV	H2bc9:NM_178197:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M7	chr13	23573953	12A2p6	cell line	sgMsh2	23573953	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	256	4	0	0	exonic	H2bc7	frameshift deletion	H2bc7:NM_178195:exon1:c.238delC:p.R80Afs*50	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M7	chr13	23575860	12A2p6	cell line	sgMsh2	23575860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	121	3	1	0.333333333	exonic	H3c4	nonsynonymous SNV	H3c4:NM_178204:exon1:c.A59G:p.Q20R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9847691	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	23752398	12A2p6	cell line	sgMsh2	23752398	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.223	146	3	1	0.333333333	exonic	H3c2	nonsynonymous SNV	H3c2:NM_178203:exon1:c.A19T:p.T7S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	23785909	12A2p6	cell line	sgMsh2	23785909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	158	0	0	NA	exonic	Trim38	synonymous SNV	Trim38:NM_001029935:exon2:c.T450C:p.R150R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	GTG	synonymous	NA	NA	NA	NA
M7	chr13	23814941	12A2p6	cell line	sgMsh2	23814941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	116	0	0	NA	exonic	Slc17a2	nonsynonymous SNV	"Slc17a2:NM_001377113:exon4:c.T316G:p.L106V,Slc17a2:NM_144836:exon4:c.T316G:p.L106V"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9973736	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	27245800	12A2p6	cell line	sgMsh2	27245800	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	77	0	0	NA	exonic	Prl3b1	nonsynonymous SNV	Prl3b1:NM_008865:exon3:c.A220C:p.T74P	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.642725802	2	0.8965728	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	27385231	12A2p6	cell line	sgMsh2	27385231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	105	0	0	NA	exonic	Prl2b1	nonsynonymous SNV	Prl2b1:NM_025532:exon4:c.A383G:p.H128R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9894178	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr13	27437193	12A2p6	cell line	sgMsh2	27437193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	187	0	0	NA	exonic	Prl8a6	nonsynonymous SNV	"Prl8a6:NM_001271378:exon2:c.T53C:p.V18A,Prl8a6:NM_001271379:exon2:c.T53C:p.V18A,Prl8a6:NM_011167:exon2:c.T50C:p.V17A"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.5679076	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M7	chr13	27662719	12A2p6	cell line	sgMsh2	27662719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	92	0	0	NA	exonic	Prl7a2	nonsynonymous SNV	Prl7a2:NM_011168:exon4:c.T310C:p.Y104H	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.8700495	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr13	29517467	12A2p6	cell line	sgMsh2	29517467	T	G	SNV	Mutect2;Vardict	2	0.033	171	47	1	0.021276596	exonic	Cdkal1	nonsynonymous SNV	Cdkal1:NM_144536:exon11:c.A998C:p.K333T	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.150425188	3	1.00E-09	CTT	nonsynonymous	CT	8	CTCTCTCT	NA
M7	chr13	30381461	12A2p6	cell line	sgMsh2	30381461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	234	0	0	NA	exonic	Agtr1a	nonsynonymous SNV	Agtr1a:NM_177322:exon3:c.T508C:p.Y170H	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999995	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr13	30660146	12A2p6	cell line	sgMsh2	30660146	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.176	21	12	0	0	exonic	Dusp22	synonymous SNV	"Dusp22:NM_001037955:exon1:c.G21A:p.Q7Q,Dusp22:NM_134068:exon1:c.G21A:p.Q7Q"	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.8278098	AGG	synonymous	NA	NA	NA	NA
M7	chr13	31560116	12A2p6	cell line	sgMsh2	31560116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	52	50	7	0.14	exonic	Foxq1	synonymous SNV	Foxq1:NM_008239:exon1:c.T1200C:p.A400A	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CTT	synonymous	NA	NA	NA	NA
M7	chr13	32127986	12A2p6	cell line	sgMsh2	32127986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	97	4	0	0	exonic	Gmds	synonymous SNV	Gmds:NM_146041:exon5:c.C459A:p.A153A	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8454892	AGG	synonymous	NA	NA	NA	NA
M7	chr13	40015381	12A2p6	cell line	sgMsh2	40015381	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	81	0	0	NA	exonic	Ofcc1	synonymous SNV	Ofcc1:NM_172143:exon17:c.C2529T:p.H843H	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	TGT	synonymous	NA	NA	NA	NA
M7	chr13	40918635	12A2p6	cell line	sgMsh2	40918635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	175	68	19	0.279411765	exonic	Gcnt2	synonymous SNV	Gcnt2:NM_133219:exon1:c.A753G:p.P251P	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999902	CAC	synonymous	CTCCAC	12	CTCCACCTCCAC	NA
M7	chr13	41316168	12A2p6	cell line	sgMsh2	41316168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	174	63	15	0.238095238	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1508T:p.H503L,Nedd9:NM_001111324:exon6:c.A1508T:p.H503L"	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr13	41316172	12A2p6	cell line	sgMsh2	41316172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	174	61	15	0.245901639	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1504G:p.S502G,Nedd9:NM_001111324:exon6:c.A1504G:p.S502G"	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	42183946	12A2p6	cell line	sgMsh2	42183946	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	19	9	0	0	exonic	Hivep1	frameshift deletion	Hivep1:NM_007772:exon9:c.7500delC:p.P2502Rfs*40	13qA4	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.866084414	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr13	43799618	12A2p6	cell line	sgMsh2	43799618	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	167	0	0	NA	exonic	Cd83	nonsynonymous SNV	Cd83:NM_001289915:exon4:c.T365C:p.L122P	13qA4	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999846	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr13	46299456	12A2p6	cell line	sgMsh2	46299456	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	89	0	0	NA	exonic	Stmnd1	nonsynonymous SNV	Stmnd1:NM_001005422:exon5:c.G607A:p.A203T	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr13	46830848	12A2p6	cell line	sgMsh2	46830848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	55	16	5	0.3125	exonic	Kif13a	nonsynonymous SNV	Kif13a:NM_010617:exon6:c.T440C:p.V147A	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.9912256	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	49061054	12A2p6	cell line	sgMsh2	49061054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	38	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon20:c.C4345T:p.P1449S,Wnk2:NM_001290313:exon20:c.C4345T:p.P1449S,Wnk2:NM_029361:exon20:c.C4345T:p.P1449S"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.647284141	2	0.5499934	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr13	49641245	12A2p6	cell line	sgMsh2	49641245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	39	21	5	0.238095238	exonic	Cenpp	synonymous SNV	Cenpp:NM_025495:exon4:c.T445C:p.L149L	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9231054	AAT	synonymous	NA	NA	NA	NA
M7	chr13	49691501	12A2p6	cell line	sgMsh2	49691501	T	C	SNV	Mutect2;Vardict	2	0.05	103	288	3	0.010416667	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon6:c.T487C:p.F163L	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.227916951	3	0.9999944	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	49722263	12A2p6	cell line	sgMsh2	49722263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	91	25	0.274725275	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon23:c.G2425A:p.V809I	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9990226	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr13	50417950	12A2p6	cell line	sgMsh2	50417950	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	65	11	5	0.454545455	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon1:c.A53T:p.E18V	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9950055	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	51442754	12A2p6	cell line	sgMsh2	51442754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	41	0	0	NA	exonic	Shc3	nonsynonymous SNV	Shc3:NM_009167:exon11:c.T1592C:p.F531S	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9807891	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr13	51567011	12A2p6	cell line	sgMsh2	51567011	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.15	22	0	0	NA	exonic	Shc3	nonsynonymous SNV	Shc3:NM_009167:exon1:c.G434T:p.S145I	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.683750854	1	0.6891932	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	53118802	12A2p6	cell line	sgMsh2	53118802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	74	0	0	NA	exonic	Ror2	nonsynonymous SNV	Ror2:NM_013846:exon6:c.C826T:p.L276F	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr13	54053932	12A2p6	cell line	sgMsh2	54053932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	96	0	0	NA	exonic	Drd1	nonsynonymous SNV	"Drd1:NM_001291801:exon2:c.T262C:p.F88L,Drd1:NM_010076:exon2:c.T262C:p.F88L"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	54552616	12A2p6	cell line	sgMsh2	54552616	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	135	100	24	0.24	exonic	4833439L19Rik	nonsynonymous SNV	"4833439L19Rik:NM_001252648:exon5:c.T287G:p.F96C,4833439L19Rik:NM_001252647:exon6:c.T593G:p.F198C,4833439L19Rik:NM_001252646:exon7:c.T851G:p.F284C,4833439L19Rik:NM_001252645:exon8:c.T851G:p.F284C,4833439L19Rik:NM_133797:exon9:c.T908G:p.F303C"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999054	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr13	54578820	12A2p6	cell line	sgMsh2	54578820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	92	27	6	0.222222222	exonic	Arl10	nonsynonymous SNV	"Arl10:NM_001377082:exon3:c.A410G:p.Y137C,Arl10:NM_019968:exon3:c.A410G:p.Y137C"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	54736542	12A2p6	cell line	sgMsh2	54736542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	49	3	1	0.333333333	exonic	Cdhr2	nonsynonymous SNV	Cdhr2:NM_001033364:exon32:c.T3889C:p.S1297P	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.615375768	2	0.7660718	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr13	55105459	12A2p6	cell line	sgMsh2	55105459	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	33	22	7	0.318181818	exonic	Zfp346	nonsynonymous SNV	"Zfp346:NM_001378934:exon1:c.A116T:p.E39V,Zfp346:NM_001378935:exon1:c.A116T:p.E39V,Zfp346:NM_012017:exon1:c.A116T:p.E39V"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.9700852	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	55247836	12A2p6	cell line	sgMsh2	55247836	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	59	78	4	0.051282051	exonic	Nsd1	frameshift deletion	Nsd1:NM_008739:exon5:c.3558delT:p.A1187Lfs*18	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.683750854	NA	NA	GTG	frameshift	NA	NA	NA	-1
M7	chr13	55247866	12A2p6	cell line	sgMsh2	55247866	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	62	60	3	0.05	exonic	Nsd1	synonymous SNV	Nsd1:NM_008739:exon5:c.T3588G:p.A1196A	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.314525393	3	0.9127403	CTG	synonymous	NA	NA	NA	NA
M7	chr13	55422034	12A2p6	cell line	sgMsh2	55422034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	171	0	0	NA	exonic	F12	synonymous SNV	F12:NM_021489:exon5:c.T330C:p.C110C	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	TAC	synonymous	NA	NA	NA	NA
M7	chr13	55670331	12A2p6	cell line	sgMsh2	55670331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	87	128	34	0.265625	exonic	Ddx46	nonsynonymous SNV	Ddx46:NM_001282055:exon18:c.A2414G:p.D805G	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	55718192	12A2p6	cell line	sgMsh2	55718192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	35	93	14	0.150537634	exonic	Txndc15	synonymous SNV	Txndc15:NM_175150:exon2:c.C468T:p.S156S	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.973208	CCC	synonymous	C	5	CCCCC	NA
M7	chr13	56527283	12A2p6	cell line	sgMsh2	56527283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	82	5	2	0.4	exonic;splicing	Fbxl21;Fbxl21	nonsynonymous SNV	Fbxl21:NM_001359807:exon3:c.T446C:p.V149A	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9980088	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr13	56545752	12A2p6	cell line	sgMsh2	56545752	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	74	1	0	0	exonic	Lect2	nonsynonymous SNV	Lect2:NM_010702:exon3:c.T156G:p.H52Q	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9848027	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	57429422	12A2p6	cell line	sgMsh2	57429422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	53	0	0	NA	exonic	Spock1	nonsynonymous SNV	"Spock1:NM_001166463:exon11:c.T1193C:p.L398P,Spock1:NM_001166466:exon12:c.T1199C:p.L400P,Spock1:NM_009262:exon12:c.T1202C:p.L401P"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	59701255	12A2p6	cell line	sgMsh2	59701255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	142	0	0	NA	exonic	Spata31d1a	nonsynonymous SNV	Spata31d1a:NM_028157:exon4:c.T3058C:p.C1020R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9247212	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	59718988	12A2p6	cell line	sgMsh2	59718988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	67	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.T3949C:p.C1317R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.8745611	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	59727549	12A2p6	cell line	sgMsh2	59727549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	250	0	0	NA	exonic	Spata31d1d	nonsynonymous SNV	Spata31d1d:NM_177711:exon4:c.A2171G:p.Q724R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9999654	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	60748254	12A2p6	cell line	sgMsh2	60748254	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	45	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon20:c.C2155T:p.R719C,Dapk1:NM_029653:exon20:c.C2155T:p.R719C,Dapk1:NM_134062:exon20:c.C2155T:p.R719C"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.9846293	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr13	60801380	12A2p6	cell line	sgMsh2	60801380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	135	0	0	NA	exonic	Ctsll3	synonymous SNV	Ctsll3:NM_027344:exon2:c.A36G:p.L12L	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999054	CTA	synonymous	NA	NA	NA	NA
M7	chr13	60935412	12A2p6	cell line	sgMsh2	60935412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	174	0	0	NA	exonic	Ctla2a	nonsynonymous SNV	"Ctla2a:NM_001145799:exon4:c.T251C:p.L84P,Ctla2a:NM_007796:exon4:c.T323C:p.L108P"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	60940209	12A2p6	cell line	sgMsh2	60940209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	149	0	0	NA	exonic	Tpbpa	synonymous SNV	Tpbpa:NM_009411:exon3:c.T162C:p.S54S	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999572	TAC	synonymous	NA	NA	NA	NA
M7	chr13	61002408	12A2p6	cell line	sgMsh2	61002408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	110	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon6:c.A779G:p.N260S,Ctsj:NM_012007:exon6:c.A776G:p.N259S"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr13	61003080	12A2p6	cell line	sgMsh2	61003080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	86	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T565C:p.Y189H,Ctsj:NM_012007:exon5:c.T562C:p.Y188H"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9241829	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	61003149	12A2p6	cell line	sgMsh2	61003149	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	115	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.C496A:p.L166I,Ctsj:NM_012007:exon5:c.C493A:p.L165I"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9995747	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr13	64174125	12A2p6	cell line	sgMsh2	64174125	T	C	SNV	Mutect2;Strelka2	2	0.05	177	41	3	0.073170732	exonic	Habp4	nonsynonymous SNV	Habp4:NM_019986:exon3:c.T575C:p.L192P	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.227916951	3	1.52E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	64793242	12A2p6	cell line	sgMsh2	64793242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon6:c.A923G:p.D308G	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9990396	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr13	65036110	12A2p6	cell line	sgMsh2	65036110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	165	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1465G:p.I489V	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.999662	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	65036189	12A2p6	cell line	sgMsh2	65036189	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	151	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1544G:p.N515S	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	65284942	12A2p6	cell line	sgMsh2	65284942	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	133	28	8	0.285714286	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon4:c.A245C:p.N82T	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	65296618	12A2p6	cell line	sgMsh2	65296618	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	140	19	3	0.157894737	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon8:c.A1574C:p.E525A	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr13	66956472	12A2p6	cell line	sgMsh2	66956472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	233	91	23	0.252747253	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A407G:p.N136S	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999996	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	68584051	12A2p6	cell line	sgMsh2	68584051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	94	11	3	0.272727273	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.C490T:p.L164F,Fastkd3:NM_027123:exon2:c.C490T:p.L164F"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9975391	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	68584627	12A2p6	cell line	sgMsh2	68584627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	88	22	5	0.227272727	exonic	Fastkd3	synonymous SNV	"Fastkd3:NM_001330423:exon2:c.T1066C:p.L356L,Fastkd3:NM_027123:exon2:c.T1066C:p.L356L"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9971073	CTT	synonymous	NA	NA	NA	NA
M7	chr13	70602846	12A2p6	cell line	sgMsh2	70602846	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	59	46	11	0.239130435	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5120A:p.S1707N	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	70738592	12A2p6	cell line	sgMsh2	70738592	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	99	0	0	NA	exonic	Adamts16	synonymous SNV	Adamts16:NM_172053:exon20:c.T3078C:p.T1026T	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	CAG	synonymous	GCAG	8	GCAGGCAG	NA
M7	chr13	70779659	12A2p6	cell line	sgMsh2	70779659	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	99	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon10:c.T1460G:p.I487R	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9331226	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	71959651	12A2p6	cell line	sgMsh2	71959651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	29	0	0	NA	exonic	Irx1	nonsynonymous SNV	Irx1:NM_010573:exon2:c.T911C:p.V304A	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	2	1	1	0.9627488	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	73927936	12A2p6	cell line	sgMsh2	73927936	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	72	1	0.013888889	exonic	Trip13	stopgain	Trip13:NM_027182:exon6:c.A583T:p.K195X	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999926	TTT	nonsynonymous	T	5	TTTTT	NA
M7	chr13	73950197	12A2p6	cell line	sgMsh2	73950197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	85	37	3	0.081081081	exonic	Brd9	nonsynonymous SNV	"Brd9:NM_001024508:exon11:c.T1261C:p.C421R,Brd9:NM_001308041:exon11:c.T1258C:p.C420R,Brd9:NM_001378947:exon11:c.T1321C:p.C441R,Brd9:NM_001378948:exon11:c.T640C:p.C214R"	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.5924611	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr13	74662350	12A2p6	cell line	sgMsh2	74662350	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	164	8	0	0	exonic	Erap1	synonymous SNV	Erap1:NM_030711:exon5:c.T807C:p.D269D	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.150425188	3	1.00E-09	ATT	synonymous	NA	NA	NA	NA
M7	chr13	76825249	12A2p6	cell line	sgMsh2	76825249	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	128	1	0	0	exonic	Mctp1	nonsynonymous SNV	"Mctp1:NM_001377108:exon13:c.A1379C:p.Q460P,Mctp1:NM_030174:exon13:c.A2039C:p.Q680P"	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.7984017	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	77051181	12A2p6	cell line	sgMsh2	77051181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	72	30	5	0.166666667	exonic	Slf1	nonsynonymous SNV	Slf1:NM_134071:exon16:c.A2080G:p.T694A	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.569792378	2	0.9697592	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr13	77323668	12A2p6	cell line	sgMsh2	77323668	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	164	2	1	0.5	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon16:c.A3191T:p.N1064I	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9950365	AAT	nonsynonymous	AAAGC	12	AAAGCAAAGCAA	NA
M7	chr13	77327914	12A2p6	cell line	sgMsh2	77327914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	95	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon17:c.C3341T:p.A1114V	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	81440140	12A2p6	cell line	sgMsh2	81440140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	125	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon66:c.A13326G:p.P4442P	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998332	CTG	synonymous	NA	NA	NA	NA
M7	chr13	81475027	12A2p6	cell line	sgMsh2	81475027	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	190	0	0	NA	exonic	Adgrv1	stopgain	Adgrv1:NM_054053:exon55:c.C11476T:p.Q3826X	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999958	TGA	nonsynonymous	NA	NA	NA	NA
M7	chr13	83575685	12A2p6	cell line	sgMsh2	83575685	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	201	0	0	NA	exonic	Mef2c	frameshift deletion	"Mef2c:NM_001347566:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347567:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347568:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347569:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347573:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347574:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347575:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347576:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347577:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347578:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347579:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347580:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347581:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001170537:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347564:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347571:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347572:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_025282:exon3:c.9delA:p.K5Rfs*6"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr13	84294848	12A2p6	cell line	sgMsh2	84294848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	85	31	6	0.193548387	exonic	Tmem161b	nonsynonymous SNV	"Tmem161b:NM_001361908:exon11:c.C1051T:p.L351F,Tmem161b:NM_001361909:exon11:c.C886T:p.L296F,Tmem161b:NM_001361911:exon12:c.C886T:p.L296F,Tmem161b:NM_175187:exon12:c.C1432T:p.L478F"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.09440077	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	89704467	12A2p6	cell line	sgMsh2	89704467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	161	7	0	0	exonic	Vcan	synonymous SNV	"Vcan:NM_001081249:exon7:c.A2373G:p.L791L,Vcan:NM_001134474:exon7:c.A2373G:p.L791L"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999784	TTA	synonymous	NA	NA	NA	NA
M7	chr13	91886406	12A2p6	cell line	sgMsh2	91886406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	157	1	0	0	exonic	Rasgrf2	nonsynonymous SNV	Rasgrf2:NM_009027:exon22:c.A2994T:p.E998D	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999728	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	92574979	12A2p6	cell line	sgMsh2	92574979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	177	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A988G:p.R330G	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999913	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr13	93092203	12A2p6	cell line	sgMsh2	93092203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	142	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.A6376C:p.R2126R	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	CTT	synonymous	NA	NA	NA	NA
M7	chr13	93175552	12A2p6	cell line	sgMsh2	93175552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	199	52	3	0.057692308	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon6:c.T639C:p.D213D,Tent2:NM_001361537:exon6:c.T639C:p.D213D,Tent2:NM_133905:exon6:c.T639C:p.D213D"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999975	CAT	synonymous	NA	NA	NA	NA
M7	chr13	93175597	12A2p6	cell line	sgMsh2	93175597	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	168	30	0	0	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_001361537:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_133905:exon6:c.594delT:p.L199Sfs*5"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr13	93346580	12A2p6	cell line	sgMsh2	93346580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	132	26	1	0.038461538	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon3:c.T174C:p.N58N,Homer1:NM_001347598:exon3:c.T174C:p.N58N,Homer1:NM_011982:exon3:c.T174C:p.N58N,Homer1:NM_147176:exon3:c.T174C:p.N58N,Homer1:NM_152134:exon3:c.T222C:p.N74N"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	ATA	synonymous	NA	NA	NA	NA
M7	chr13	93349270	12A2p6	cell line	sgMsh2	93349270	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	156	27	4	0.148148148	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon4:c.G360A:p.K120K,Homer1:NM_001347598:exon4:c.G360A:p.K120K,Homer1:NM_011982:exon4:c.G360A:p.K120K,Homer1:NM_147176:exon4:c.G360A:p.K120K,Homer1:NM_152134:exon4:c.G408A:p.K136K"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9951829	AGA	synonymous	NA	NA	NA	NA
M7	chr13	93439726	12A2p6	cell line	sgMsh2	93439726	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.092	57	45	2	0.044444444	exonic	Jmy	synonymous SNV	Jmy:NM_021310:exon10:c.T2668C:p.L890L	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.41936719	2	0.9475583	AAC	synonymous	NA	NA	NA	NA
M7	chr13	93459675	12A2p6	cell line	sgMsh2	93459675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	112	47	10	0.212765957	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon4:c.T1445C:p.M482T	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9969517	CAT	nonsynonymous	TCA	8	TCATCATC	NA
M7	chr13	93617543	12A2p6	cell line	sgMsh2	93617543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	198	0	0	NA	exonic	Bhmt	nonsynonymous SNV	Bhmt:NM_016668:exon8:c.A1157G:p.K386R	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9969802	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	95514004	12A2p6	cell line	sgMsh2	95514004	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.252	106	185	30	0.162162162	exonic	F2rl1	synonymous SNV	F2rl1:NM_007974:exon2:c.C369T:p.D123D	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	GGT	synonymous	NA	NA	NA	NA
M7	chr13	96396763	12A2p6	cell line	sgMsh2	96396763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	78	4	1	0.25	exonic	Poc5	nonsynonymous SNV	Poc5:NM_026173:exon6:c.A398G:p.H133R	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9976049	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	96652012	12A2p6	cell line	sgMsh2	96652012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	108	217	47	0.216589862	exonic	Hmgcr	nonsynonymous SNV	"Hmgcr:NM_001360165:exon18:c.T2298G:p.D766E,Hmgcr:NM_001360166:exon18:c.T2328G:p.D776E,Hmgcr:NM_008255:exon18:c.T2298G:p.D766E"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr13	99434813	12A2p6	cell line	sgMsh2	99434813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	222	99	14	0.141414141	exonic	Map1b	nonsynonymous SNV	Map1b:NM_008634:exon5:c.A1399G:p.T467A	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9649517	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	100023682	12A2p6	cell line	sgMsh2	100023682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	118	45	15	0.333333333	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon38:c.A7190G:p.D2397G	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.9548659	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr13	100059643	12A2p6	cell line	sgMsh2	100059643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	107	50	15	0.3	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon18:c.C3610T:p.P1204S	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr13	100242802	12A2p6	cell line	sgMsh2	100242802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	328	0	0	NA	exonic	Naip5	synonymous SNV	Naip5:NM_010870:exon4:c.C729T:p.Y243Y	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	1.25E-08	CGT	synonymous	NA	NA	NA	NA
M7	chr13	100506310	12A2p6	cell line	sgMsh2	100506310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	124	29	7	0.24137931	exonic	Ocln	synonymous SNV	"Ocln:NM_001360539:exon5:c.T681C:p.P227P,Ocln:NM_001360536:exon7:c.T1263C:p.P421P,Ocln:NM_001360537:exon7:c.T1263C:p.P421P,Ocln:NM_001360538:exon7:c.T1263C:p.P421P,Ocln:NM_008756:exon7:c.T1263C:p.P421P"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	TAG	synonymous	NA	NA	NA	NA
M7	chr13	100684293	12A2p6	cell line	sgMsh2	100684293	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	95	46	10	0.217391304	exonic	Ccdc125	nonsynonymous SNV	"Ccdc125:NM_001168386:exon5:c.A443C:p.N148T,Ccdc125:NM_183115:exon6:c.A521C:p.N174T"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	AAT	nonsynonymous	AAAT	8	AAATAAAT	NA
M7	chr13	100736266	12A2p6	cell line	sgMsh2	100736266	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	205	3	0	0	exonic	Mrps36	frameshift deletion	"Mrps36:NM_001190264:exon4:c.293delG:p.G98Vfs*27,Mrps36:NM_025369:exon4:c.299delG:p.G100Vfs*27"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.843292719	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr13	102705237	12A2p6	cell line	sgMsh2	102705237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	202	0	0	NA	exonic	Cd180	nonsynonymous SNV	"Cd180:NM_001360519:exon3:c.A214G:p.S72G,Cd180:NM_008533:exon3:c.A790G:p.S264G"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999979	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr13	102736450	12A2p6	cell line	sgMsh2	102736450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	74	55	12	0.218181818	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.G6409A:p.A2137T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9796095	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr13	102736962	12A2p6	cell line	sgMsh2	102736962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	141	78	21	0.269230769	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.A5897G:p.K1966R	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.998966	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr13	102751407	12A2p6	cell line	sgMsh2	102751407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	74	23	0.310810811	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon25:c.A3493G:p.I1165V	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.969369	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr13	104154329	12A2p6	cell line	sgMsh2	104154329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	215	119	21	0.176470588	exonic	Trappc13	synonymous SNV	"Trappc13:NM_001093759:exon7:c.A513G:p.P171P,Trappc13:NM_001093760:exon7:c.A513G:p.P171P,Trappc13:NM_001360778:exon7:c.A513G:p.P171P,Trappc13:NM_025879:exon7:c.A513G:p.P171P"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9978912	ATG	synonymous	NA	NA	NA	NA
M7	chr13	104493669	12A2p6	cell line	sgMsh2	104493669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	3	1	0.333333333	exonic	Adamts6	nonsynonymous SNV	Adamts6:NM_001081020:exon25:c.A3319G:p.R1107G	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	CAG	nonsynonymous	CAGA	8	CAGACAGA	NA
M7	chr13	105444804	12A2p6	cell line	sgMsh2	105444804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	102	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.C551A:p.P184H	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr13	107748230	12A2p6	cell line	sgMsh2	107748230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	106	39	9	0.230769231	exonic	Zswim6	synonymous SNV	Zswim6:NM_145456:exon9:c.A1440G:p.L480L	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7007714	GTA	synonymous	NA	NA	NA	NA
M7	chr13	108169477	12A2p6	cell line	sgMsh2	108169477	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	135	17	0	0	exonic	Ercc8	nonsynonymous SNV	"Ercc8:NM_001362403:exon3:c.A46G:p.T16A,Ercc8:NM_028042:exon4:c.A385G:p.T129A"	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.1868919	3	1.88E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	109740521	12A2p6	cell line	sgMsh2	109740521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	120	16	4	0.25	exonic	Pde4d	nonsynonymous SNV	Pde4d:NM_011056:exon4:c.G407A:p.S136N	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr13	111756647	12A2p6	cell line	sgMsh2	111756647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	107	47	16	0.340425532	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon13:c.A2323G:p.T775A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr13	112895502	12A2p6	cell line	sgMsh2	112895502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	120	150	36	0.24	exonic	Mtrex	nonsynonymous SNV	Mtrex:NM_028151:exon16:c.A1775G:p.H592R	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9903697	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr13	114970490	12A2p6	cell line	sgMsh2	114970490	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	181	186	42	0.225806452	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon24:c.T3064A:p.S1022T	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.733892583	2	0.9143241	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	116301769	12A2p6	cell line	sgMsh2	116301769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	61	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon5:c.G775A:p.G259R	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr13	116303251	12A2p6	cell line	sgMsh2	116303251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	75	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon4:c.T560C:p.V187A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.8140327	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	116305373	12A2p6	cell line	sgMsh2	116305373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.097	48	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon3:c.T323C:p.V108A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	0.442158885	2	0.9483975	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr13	118385342	12A2p6	cell line	sgMsh2	118385342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	90	120	25	0.208333333	exonic	Mrps30	synonymous SNV	Mrps30:NM_021556:exon2:c.T621C:p.G207G	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	CAC	synonymous	NA	NA	NA	NA
M7	chr14	7907222	12A2p6	cell line	sgMsh2	7907222	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.104	73	279	6	0.021505376	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon22:c.A3794G:p.H1265R,Flnb:NM_134080:exon22:c.A3794G:p.H1265R"	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.474067258	2	0.9954947	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	7907282	12A2p6	cell line	sgMsh2	7907282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	68	287	63	0.219512195	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon22:c.A3854C:p.N1285T,Flnb:NM_134080:exon22:c.A3854C:p.N1285T"	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9957838	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	12344506	12A2p6	cell line	sgMsh2	12344506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	31	0	0	NA	exonic	Fezf2	nonsynonymous SNV	Fezf2:NM_080433:exon2:c.A680G:p.Y227C	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.966611	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr14	14089403	12A2p6	cell line	sgMsh2	14089403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	82	19	6	0.315789474	exonic	Atxn7	synonymous SNV	Atxn7:NM_139227:exon6:c.G918A:p.K306K	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9980902	AGA	synonymous	NA	NA	NA	NA
M7	chr14	14771278	12A2p6	cell line	sgMsh2	14771278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	208	122	38	0.31147541	exonic	Slc4a7	synonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360515:exon15:c.A1992G:p.T664T,Slc4a7:NM_001360516:exon15:c.A1968G:p.T656T,Slc4a7:NM_001360517:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360520:exon15:c.A1953G:p.T651T,Slc4a7:NM_001360504:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360505:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360506:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360508:exon16:c.A2361G:p.T787T,Slc4a7:NM_001360509:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360510:exon16:c.A2322G:p.T774T,Slc4a7:NM_001360511:exon16:c.A2067G:p.T689T,Slc4a7:NM_001360512:exon16:c.A2052G:p.T684T,Slc4a7:NM_001360513:exon16:c.A2028G:p.T676T,Slc4a7:NM_001360514:exon16:c.A2013G:p.T671T"	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999985	CAG	synonymous	NA	NA	NA	NA
M7	chr14	14771285	12A2p6	cell line	sgMsh2	14771285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	195	124	39	0.314516129	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360515:exon15:c.A1999G:p.S667G,Slc4a7:NM_001360516:exon15:c.A1975G:p.S659G,Slc4a7:NM_001360517:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360520:exon15:c.A1960G:p.S654G,Slc4a7:NM_001360504:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360505:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360506:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360508:exon16:c.A2368G:p.S790G,Slc4a7:NM_001360509:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360510:exon16:c.A2329G:p.S777G,Slc4a7:NM_001360511:exon16:c.A2074G:p.S692G,Slc4a7:NM_001360512:exon16:c.A2059G:p.S687G,Slc4a7:NM_001360513:exon16:c.A2035G:p.S679G,Slc4a7:NM_001360514:exon16:c.A2020G:p.S674G"	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999969	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr14	14774979	12A2p6	cell line	sgMsh2	14774979	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	59	76	19	0.25	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360515:exon18:c.T2393A:p.L798H,Slc4a7:NM_001360516:exon18:c.T2369A:p.L790H,Slc4a7:NM_001360517:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360520:exon18:c.T2354A:p.L785H,Slc4a7:NM_001360504:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360505:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360506:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360508:exon19:c.T2762A:p.L921H,Slc4a7:NM_001360509:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360510:exon19:c.T2723A:p.L908H,Slc4a7:NM_001360511:exon19:c.T2468A:p.L823H,Slc4a7:NM_001360512:exon19:c.T2453A:p.L818H,Slc4a7:NM_001360513:exon19:c.T2429A:p.L810H,Slc4a7:NM_001360514:exon19:c.T2414A:p.L805H"	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9929945	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	14865652	12A2p6	cell line	sgMsh2	14865652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	189	0	0	NA	exonic	Nek10	nonsynonymous SNV	Nek10:NM_001195229:exon21:c.A1931G:p.Y644C	14qA1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999956	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	16423715	12A2p6	cell line	sgMsh2	16423715	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.35	36	98	3	0.030612245	exonic	Top2b	frameshift deletion	Top2b:NM_009409:exon32:c.4276delA:p.S1428Vfs*40	14qA2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr14	20409093	12A2p6	cell line	sgMsh2	20409093	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	88	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon18:c.C2033T:p.T678I,Cfap70:NM_001163639:exon18:c.C2069T:p.T690I,Cfap70:NM_029698:exon19:c.C2201T:p.T734I"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9986404	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr14	20714697	12A2p6	cell line	sgMsh2	20714697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	51	24	5	0.208333333	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon10:c.A2134G:p.T712A,Zswim8:NM_027996:exon10:c.A2134G:p.T712A,Zswim8:NM_001252082:exon11:c.A2032G:p.T678A"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9890151	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	21660934	12A2p6	cell line	sgMsh2	21660934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	43	10	2	0.2	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon13:c.A1948G:p.T650A,Kat6b:NM_017479:exon13:c.A1948G:p.T650A"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	21792527	12A2p6	cell line	sgMsh2	21792527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	133	33	13	0.393939394	exonic	Samd8	nonsynonymous SNV	"Samd8:NM_001359953:exon5:c.A916C:p.T306P,Samd8:NM_001359954:exon5:c.A967C:p.T323P,Samd8:NM_026283:exon5:c.A1105C:p.T369P"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.999894	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.246	52	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr14	24457244	12A2p6	cell line	sgMsh2	24457244	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	139	32	1	0.03125	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon22:c.G2963T:p.G988V	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.182333561	3	1.27E-09	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr14	27384212	12A2p6	cell line	sgMsh2	27384212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	111	31	7	0.225806452	exonic	Arhgef3	nonsynonymous SNV	"Arhgef3:NM_001289687:exon4:c.A431T:p.K144I,Arhgef3:NM_001289688:exon4:c.A449T:p.K150I,Arhgef3:NM_027871:exon5:c.A452T:p.K151I,Arhgef3:NM_001289686:exon7:c.A512T:p.K171I"	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996309	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr14	27481131	12A2p6	cell line	sgMsh2	27481131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	112	43	14	0.325581395	exonic	Tasor	nonsynonymous SNV	Tasor:NM_001114879:exon24:c.A4657G:p.I1553V	14qA3	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996512	AAT	nonsynonymous	ATTG	8	ATTGATTG	NA
M7	chr14	30658375	12A2p6	cell line	sgMsh2	30658375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	112	18	5	0.277777778	exonic	Rft1	nonsynonymous SNV	Rft1:NM_177815:exon2:c.G130A:p.V44M	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996512	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	75	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9971617	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr14	31015289	12A2p6	cell line	sgMsh2	31015289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	199	157	13	0.082802548	exonic	Gnl3	stopgain	Gnl3:NM_153547:exon7:c.A631T:p.R211X	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999975	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	31151199	12A2p6	cell line	sgMsh2	31151199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	157	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon30:c.G3243A:p.T1081T	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999728	TCG	synonymous	NA	NA	NA	NA
M7	chr14	31187224	12A2p6	cell line	sgMsh2	31187224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	106	351	97	0.276353276	exonic	Nisch	synonymous SNV	"Nisch:NM_001347583:exon10:c.C1014T:p.H338H,Nisch:NM_022656:exon10:c.C1014T:p.H338H"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9995099	GGT	synonymous	NA	NA	NA	NA
M7	chr14	31270161	12A2p6	cell line	sgMsh2	31270161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	65	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon57:c.A8963G:p.N2988S	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9950055	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	31295595	12A2p6	cell line	sgMsh2	31295595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	76	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon27:c.A4478G:p.D1493G	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9973179	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr14	31302344	12A2p6	cell line	sgMsh2	31302344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	45	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon17:c.T2777A:p.I926N	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9846293	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	31347762	12A2p6	cell line	sgMsh2	31347762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	176	74	19	0.256756757	exonic	Capn7	nonsynonymous SNV	"Capn7:NM_001360187:exon5:c.C410A:p.P137H,Capn7:NM_009796:exon5:c.C542A:p.P181H"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999908	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr14	31552962	12A2p6	cell line	sgMsh2	31552962	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	25	0	0	NA	exonic	Colq	nonsynonymous SNV	Colq:NM_009937:exon3:c.T248A:p.L83Q	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.953699	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr14	31708010	12A2p6	cell line	sgMsh2	31708010	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	143	182	4	0.021978022	exonic	Ankrd28	synonymous SNV	Ankrd28:NM_001024604:exon24:c.T2610C:p.N870N	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.209683595	3	4.96E-09	TAT	synonymous	NA	NA	NA	NA
M7	chr14	32180565	12A2p6	cell line	sgMsh2	32180565	T	G	SNV	Mutect2;MuSe;Vardict	3	0.322	57	3	1	0.333333333	exonic	Timm23	nonsynonymous SNV	Timm23:NM_016897:exon7:c.A620C:p.Q207P	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9921594	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	32337491	12A2p6	cell line	sgMsh2	32337491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	128	54	9	0.166666667	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon10:c.A1037G:p.N346S	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998593	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	32347610	12A2p6	cell line	sgMsh2	32347610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	31	64	9	0.140625	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon24:c.T3014C:p.F1005S	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.966611	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr14	33359165	12A2p6	cell line	sgMsh2	33359165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	43	20	7	0.35	exonic	Arhgap22	nonsynonymous SNV	Arhgap22:NM_153800:exon6:c.T517C:p.F173L	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	33633039	12A2p6	cell line	sgMsh2	33633039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	61	0	0	NA	exonic	Ptpn20	nonsynonymous SNV	Ptpn20:NM_008978:exon10:c.T1070C:p.V357A	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9937412	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	36900843	12A2p6	cell line	sgMsh2	36900843	A	G	SNV	Mutect2;Vardict	2	0.079	65	21	0	0	exonic	Ccser2	synonymous SNV	"Ccser2:NM_001347503:exon4:c.T348C:p.H116H,Ccser2:NM_028407:exon5:c.T405C:p.H135H,Ccser2:NM_001347502:exon6:c.T2064C:p.H688H,Ccser2:NM_027045:exon7:c.T2064C:p.H688H"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.360108783	2	0.5095027	CAT	synonymous	NA	NA	NA	NA
M7	chr14	36940490	12A2p6	cell line	sgMsh2	36940490	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	132	34	11	0.323529412	exonic	Ccser2	nonsynonymous SNV	"Ccser2:NM_001347502:exon1:c.G736A:p.A246T,Ccser2:NM_027045:exon2:c.G736A:p.A246T"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998878	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr14	36940587	12A2p6	cell line	sgMsh2	36940587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	114	24	9	0.375	exonic	Ccser2	synonymous SNV	"Ccser2:NM_001347502:exon1:c.T639C:p.T213T,Ccser2:NM_027045:exon2:c.T639C:p.T213T"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996886	AAG	synonymous	NA	NA	NA	NA
M7	chr14	38371303	12A2p6	cell line	sgMsh2	38371303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	98	0	0	NA	exonic	Nrg3	stopgain	"Nrg3:NM_001190187:exon9:c.G1605A:p.W535X,Nrg3:NM_008734:exon9:c.G1608A:p.W536X"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9992286	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr14	38381662	12A2p6	cell line	sgMsh2	38381662	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	84	0	0	NA	exonic	Nrg3	synonymous SNV	"Nrg3:NM_001190187:exon7:c.T1371C:p.T457T,Nrg3:NM_001190188:exon7:c.T1374C:p.T458T,Nrg3:NM_008734:exon7:c.T1374C:p.T458T"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.341875427	3	8.47E-06	AAG	synonymous	NA	NA	NA	NA
M7	chr14	39472225	12A2p6	cell line	sgMsh2	39472225	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	22	0	0	NA	exonic	Nrg3	synonymous SNV	"Nrg3:NM_001190187:exon1:c.G576T:p.T192T,Nrg3:NM_001190188:exon1:c.G576T:p.T192T,Nrg3:NM_008734:exon1:c.G576T:p.T192T"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9455761	CCG	synonymous	NA	NA	NA	NA
M7	chr14	40913481	12A2p6	cell line	sgMsh2	40913481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	41	59	6	0.101694915	exonic	Tspan14	nonsynonymous SNV	"Tspan14:NM_001316748:exon6:c.T457C:p.C153R,Tspan14:NM_145928:exon6:c.T457C:p.C153R"	14qB	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9807891	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	43676151	12A2p6	cell line	sgMsh2	43676151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	56	0	0	NA	exonic	Gm8165	synonymous SNV	Gm8165:NM_001378716:exon2:c.A252G:p.K84K	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9917055	TTT	synonymous	T	5	TTTTT	NA
M7	chr14	45330896	12A2p6	cell line	sgMsh2	45330896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	105	531	123	0.231638418	exonic	Psmc6	nonsynonymous SNV	Psmc6:NM_025959:exon2:c.A152G:p.Q51R	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9994813	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr14	47241760	12A2p6	cell line	sgMsh2	47241760	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	84	24	6	0.25	exonic	Wdhd1	nonsynonymous SNV	"Wdhd1:NM_001360532:exon25:c.A3209T:p.K1070M,Wdhd1:NM_172598:exon25:c.A3098T:p.K1033M"	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9982947	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.148	77	27	6	0.222222222	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.674634175	2	0.8073962	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr14	47701134	12A2p6	cell line	sgMsh2	47701134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	173	159	40	0.251572327	exonic	Ktn1	nonsynonymous SNV	"Ktn1:NM_001347522:exon19:c.T2282C:p.V761A,Ktn1:NM_008477:exon19:c.T2282C:p.V761A,Ktn1:NM_001293635:exon20:c.T2282C:p.V761A,Ktn1:NM_001347519:exon20:c.T2282C:p.V761A,Ktn1:NM_001347520:exon20:c.T2282C:p.V761A,Ktn1:NM_001347521:exon20:c.T2282C:p.V761A,Ktn1:NM_001347523:exon20:c.T2282C:p.V761A,Ktn1:NM_001347524:exon20:c.T2282C:p.V761A,Ktn1:NM_001347525:exon20:c.T2282C:p.V761A,Ktn1:NM_001347526:exon20:c.T2282C:p.V761A,Ktn1:NM_001347527:exon20:c.T2282C:p.V761A,Ktn1:NM_001347528:exon20:c.T2282C:p.V761A,Ktn1:NM_001379486:exon20:c.T2282C:p.V761A,Ktn1:NM_001379487:exon20:c.T2279C:p.V760A,Ktn1:NM_001379488:exon20:c.T2279C:p.V760A,Ktn1:NM_001379489:exon20:c.T2279C:p.V760A,Ktn1:NM_001379490:exon20:c.T2282C:p.V761A,Ktn1:NM_001379491:exon20:c.T2282C:p.V761A,Ktn1:NM_001379492:exon20:c.T2282C:p.V761A,Ktn1:NM_001379493:exon20:c.T2282C:p.V761A,Ktn1:NM_001379494:exon20:c.T2282C:p.V761A,Ktn1:NM_001379495:exon20:c.T2282C:p.V761A,Ktn1:NM_001293636:exon21:c.T1757C:p.V586A"	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.999989	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	48168284	12A2p6	cell line	sgMsh2	48168284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	52	11	1	0.090909091	exonic	Peli2	synonymous SNV	Peli2:NM_033602:exon2:c.A165G:p.K55K	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9896146	AAC	synonymous	NA	NA	NA	NA
M7	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.616	38	16	8	0.5	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M7	chr14	48256095	12A2p6	cell line	sgMsh2	48256095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	73	19	3	0.157894737	exonic	Peli2	nonsynonymous SNV	Peli2:NM_033602:exon6:c.A773C:p.D258A	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.83873438	1	0.09388476	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	48658834	12A2p6	cell line	sgMsh2	48658834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	95	0	0	NA	exonic	Otx2	synonymous SNV	"Otx2:NM_001360226:exon3:c.T766C:p.L256L,Otx2:NM_144841:exon3:c.T742C:p.L248L,Otx2:NM_001286483:exon4:c.T742C:p.L248L,Otx2:NM_001360225:exon4:c.T766C:p.L256L,Otx2:NM_001286481:exon5:c.T766C:p.L256L,Otx2:NM_001286482:exon5:c.T742C:p.L248L"	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9990856	AAG	synonymous	NA	NA	NA	NA
M7	chr14	49074099	12A2p6	cell line	sgMsh2	49074099	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	140	32	9	0.28125	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon2:c.A625C:p.I209L,Ap5m1:NM_144535:exon2:c.A625C:p.I209L"	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999287	GAT	nonsynonymous	ATTTCT	14	ATTTCTATTTCTAT	NA
M7	chr14	50767276	12A2p6	cell line	sgMsh2	50767276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	87	44	11	0.25	exonic	Ttc5	nonsynonymous SNV	"Ttc5:NM_001360545:exon8:c.T626G:p.L209W,Ttc5:NM_001080949:exon9:c.T1070G:p.L357W"	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9985612	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr14	50793705	12A2p6	cell line	sgMsh2	50793705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	76	0	0	NA	exonic	Ccnb1ip1	synonymous SNV	Ccnb1ip1:NM_001111119:exon2:c.T150C:p.A50A	14qC1	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9973179	AAG	synonymous	NA	NA	NA	NA
M7	chr14	51999964	12A2p6	cell line	sgMsh2	51999964	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.124	34	66	2	0.03030303	exonic	Arhgef40	nonsynonymous SNV	"Arhgef40:NM_001145921:exon17:c.G3709A:p.A1237T,Arhgef40:NM_001145922:exon17:c.G3709A:p.A1237T,Arhgef40:NM_198249:exon17:c.G3709A:p.A1237T"	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	0.565234039	2	0.6966764	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	101	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9993492	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	52036074	12A2p6	cell line	sgMsh2	52036074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	68	0	0	NA	exonic	Olfr221	synonymous SNV	Olfr221:NM_001001808:exon1:c.T36C:p.F12F	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9957838	CAA	synonymous	NA	NA	NA	NA
M7	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	114	203	55	0.270935961	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996886	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M7	chr14	52215181	12A2p6	cell line	sgMsh2	52215181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	184	56	12	0.214285714	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon19:c.A3880G:p.I1294V	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999941	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr14	52226039	12A2p6	cell line	sgMsh2	52226039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	67	93	20	0.215053763	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon9:c.A2147G:p.E716G	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9955388	TTC	nonsynonymous	TACT	9	TACTTACTT	NA
M7	chr14	52450765	12A2p6	cell line	sgMsh2	52450765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	165	0	0	NA	exonic	Olfr1509	synonymous SNV	Olfr1509:NM_020514:exon1:c.T351C:p.I117I	14qC2	chr14-7006943-52852156	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999827	TTA	synonymous	NA	NA	NA	NA
M7	chr14	54439978	12A2p6	cell line	sgMsh2	54439978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	38	226	73	0.32300885	exonic	Mmp14	nonsynonymous SNV	Mmp14:NM_008608:exon9:c.A1375T:p.I459F	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9773057	AAT	nonsynonymous	GGAA	8	GGAAGGAA	NA
M7	chr14	54513409	12A2p6	cell line	sgMsh2	54513409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	56	112	25	0.223214286	exonic	Prmt5	nonsynonymous SNV	"Prmt5:NM_001313907:exon6:c.G341A:p.R114H,Prmt5:NM_001313906:exon7:c.G602A:p.R201H,Prmt5:NM_013768:exon7:c.G659A:p.R220H"	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	2	1	1	0.9917055	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	73	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9968218	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	54642734	12A2p6	cell line	sgMsh2	54642734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	48	185	47	0.254054054	exonic	Acin1	synonymous SNV	"Acin1:NM_001242605:exon12:c.C1692T:p.R564R,Acin1:NM_001242606:exon12:c.C1653T:p.R551R,Acin1:NM_001085472:exon13:c.C1740T:p.R580R,Acin1:NM_019567:exon13:c.C1899T:p.R633R,Acin1:NM_001374770:exon18:c.C3891T:p.R1297R,Acin1:NM_001085473:exon19:c.C3975T:p.R1325R,Acin1:NM_023190:exon19:c.C4011T:p.R1337R"	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.929901161	1	0.9656108	GGC	synonymous	NA	NA	NA	NA
M7	chr14	54876600	12A2p6	cell line	sgMsh2	54876600	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	16	2	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.C614T:p.P205L	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.925154	GGG	nonsynonymous	GGCG	8	GGCGGGCG	NA
M7	chr14	54946434	12A2p6	cell line	sgMsh2	54946434	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	32	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon34:c.A5042C:p.N1681T,Myh6:NM_010856:exon34:c.A5042C:p.N1681T"	14qC2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9683943	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	54971506	12A2p6	cell line	sgMsh2	54971506	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.224	55	0	0	NA	exonic	Myh7	synonymous SNV	"Myh7:NM_001361607:exon40:c.G5661A:p.E1887E,Myh7:NM_080728:exon40:c.G5661A:p.E1887E"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9912256	GCT	synonymous	CTC	8	CTCCTCCT	NA
M7	chr14	55065991	12A2p6	cell line	sgMsh2	55065991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	50	7	2	0.285714286	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A4535G:p.Q1512R	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9883813	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	55234674	12A2p6	cell line	sgMsh2	55234674	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	103	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.T21C:p.P7P	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	CTA	synonymous	NA	NA	NA	NA
M7	chr14	55576701	12A2p6	cell line	sgMsh2	55576701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	56	0	0	NA	exonic	Fitm1	nonsynonymous SNV	Fitm1:NM_026808:exon2:c.T653C:p.L218P	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.774917634	1	0.7420371	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	55636269	12A2p6	cell line	sgMsh2	55636269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.273	61	84	15	0.178571429	exonic	Tm9sf1	frameshift deletion	"Tm9sf1:NM_001360063:exon5:c.1771delT:p.S591Pfs*2,Tm9sf1:NM_028780:exon6:c.1771delT:p.S591Pfs*2"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr14	55651469	12A2p6	cell line	sgMsh2	55651469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	100	1	1	1	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon3:c.A451G:p.S151G,Tssk4:NM_001253889:exon3:c.A451G:p.S151G"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9993113	CAG	nonsynonymous	C	5	CCCCC	NA
M7	chr14	55705466	12A2p6	cell line	sgMsh2	55705466	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	71	0	0	NA	exonic	Tgm1	frameshift deletion	"Tgm1:NM_001161714:exon12:c.1916delC:p.P639Qfs*6,Tgm1:NM_001161715:exon12:c.1916delC:p.P639Qfs*6,Tgm1:NM_019984:exon12:c.1916delC:p.P639Qfs*6"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7	chr14	55866296	12A2p6	cell line	sgMsh2	55866296	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	145	0	0	NA	exonic	Nynrin	synonymous SNV	Nynrin:NM_001040072:exon5:c.T2475G:p.T825T	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.168658544	3	1.02E-09	CTT	synonymous	NA	NA	NA	NA
M7	chr14	56535393	12A2p6	cell line	sgMsh2	56535393	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	116	14	6	0.428571429	exonic	Cenpj	nonsynonymous SNV	Cenpj:NM_001014996:exon10:c.G3189T:p.K1063N	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.999722	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	102	52	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9993851	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	56796690	12A2p6	cell line	sgMsh2	56796690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	79	31	9	0.290322581	exonic	Zmym5	nonsynonymous SNV	"Zmym5:NM_001253752:exon7:c.A1063G:p.M355V,Zmym5:NM_001253753:exon7:c.A1063G:p.M355V,Zmym5:NM_144842:exon7:c.A1063G:p.M355V"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9977367	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr14	56804452	12A2p6	cell line	sgMsh2	56804452	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	65	35	3	0.085714286	exonic	Zmym5	frameshift deletion	"Zmym5:NM_001253752:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_001253753:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_144842:exon3:c.368delA:p.N123Mfs*17"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr14	56902966	12A2p6	cell line	sgMsh2	56902966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	122	78	24	0.307692308	exonic	Zmym2	synonymous SNV	"Zmym2:NM_001360643:exon3:c.A261G:p.S87S,Zmym2:NM_029498:exon3:c.A261G:p.S87S,Zmym2:NM_177627:exon3:c.A261G:p.S87S"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998022	CAA	synonymous	A	5	AAAAA	NA
M7	chr14	56959772	12A2p6	cell line	sgMsh2	56959772	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	145	135	29	0.214814815	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon25:c.T3996A:p.S1332R,Zmym2:NM_029498:exon25:c.T3996A:p.S1332R"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999463	GTT	nonsynonymous	GTTCTA	12	GTTCTAGTTCTA	NA
M7	chr14	59413492	12A2p6	cell line	sgMsh2	59413492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	80	15	0	0	exonic	Gm45935;Setdb2	synonymous SNV	"Setdb2:NM_001320721:exon8:c.A1275G:p.K425K,Setdb2:NM_001320720:exon9:c.A1341G:p.K447K,Gm45935:NM_001320725:exon9:c.A1341G:p.K447K"	14qC3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9978612	CTT	synonymous	NA	NA	NA	NA
M7	chr14	62404549	12A2p6	cell line	sgMsh2	62404549	C	T	SNV	Mutect2;Vardict	2	0.041	101	0	0	NA	exonic	Gucy1b2	nonsynonymous SNV	"Gucy1b2:NM_001204340:exon15:c.G2123A:p.R708Q,Gucy1b2:NM_172810:exon15:c.G2168A:p.R723Q"	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.1868919	3	0.9999998	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr14	63798341	12A2p6	cell line	sgMsh2	63798341	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	48	0	0	NA	exonic	Xkr6	frameshift deletion	Xkr6:NM_173393:exon2:c.890delC:p.Q299Nfs*7	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7	chr14	65032312	12A2p6	cell line	sgMsh2	65032312	A	G	SNV	Mutect2;Vardict	2	0.045	124	20	1	0.05	exonic	Ints9	nonsynonymous SNV	"Ints9:NM_001253731:exon13:c.A1291G:p.I431V,Ints9:NM_153414:exon13:c.A1363G:p.I455V"	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.205125256	3	3.66E-08	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	65819985	12A2p6	cell line	sgMsh2	65819985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	82	75	17	0.226666667	exonic	Esco2	nonsynonymous SNV	Esco2:NM_028039:exon11:c.T1760C:p.V587A	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9980902	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	84	12251	3842	0.313607052	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9982947	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr14	66143923	12A2p6	cell line	sgMsh2	66143923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	166	0	0	NA	exonic	Chrna2	synonymous SNV	Chrna2:NM_144803:exon4:c.T228C:p.D76D	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999837	ATG	synonymous	NA	NA	NA	NA
M7	chr14	66297304	12A2p6	cell line	sgMsh2	66297304	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	22	101	24	0.237623762	exonic	Trim35	nonsynonymous SNV	Trim35:NM_029979:exon1:c.G235A:p.A79T	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	2	1	1	0.9455761	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr14	67832250	12A2p6	cell line	sgMsh2	67832250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	104	35	12	0.342857143	exonic	Dock5	synonymous SNV	Dock5:NM_177780:exon11:c.T1017C:p.D339D	14qD1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.999451	CAT	synonymous	TCA	8	TCATCATC	NA
M7	chr14	70183684	12A2p6	cell line	sgMsh2	70183684	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	151	7	0	0	exonic	Sorbs3	nonsynonymous SNV	"Sorbs3:NM_001271409:exon9:c.G907A:p.D303N,Sorbs3:NM_001271407:exon20:c.G1963A:p.D655N,Sorbs3:NM_001271408:exon20:c.G1963A:p.D655N,Sorbs3:NM_011366:exon20:c.G2122A:p.D708N"	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.237033629	3	4.52E-08	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr14	70421637	12A2p6	cell line	sgMsh2	70421637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	49	0	0	NA	exonic	Piwil2	synonymous SNV	"Piwil2:NM_001364321:exon5:c.T651C:p.S217S,Piwil2:NM_021308:exon5:c.T438C:p.S146S"	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9877115	AAC	synonymous	NA	NA	NA	NA
M7	chr14	70478088	12A2p6	cell line	sgMsh2	70478088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	74	92	39	0.423913043	exonic	Bmp1	nonsynonymous SNV	"Bmp1:NM_009755:exon19:c.T2606C:p.V869A,Bmp1:NM_001360021:exon20:c.T2606C:p.V869A"	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.902551127	1	0.9752192	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	70566157	12A2p6	cell line	sgMsh2	70566157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	43	4	0	0	exonic	Hr	nonsynonymous SNV	"Hr:NM_001379479:exon10:c.A2317G:p.M773V,Hr:NM_021877:exon11:c.A2317G:p.M773V"	14qD2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	75206279	12A2p6	cell line	sgMsh2	75206279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	76	4	0	0	exonic	Lcp1	nonsynonymous SNV	"Lcp1:NM_001247984:exon7:c.A734C:p.N245T,Lcp1:NM_008879:exon8:c.A734C:p.N245T"	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9973179	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr14	75206283	12A2p6	cell line	sgMsh2	75206283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	74	3	0	0	exonic	Lcp1	synonymous SNV	"Lcp1:NM_001247984:exon7:c.A738G:p.E246E,Lcp1:NM_008879:exon8:c.A738G:p.E246E"	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9969966	AAG	synonymous	NA	NA	NA	NA
M7	chr14	75242373	12A2p6	cell line	sgMsh2	75242373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	66	0	0	NA	exonic	Cpb2	stopgain	Cpb2:NM_019775:exon1:c.G19T:p.G7X	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.911667805	1	0.9740983	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr14	78307833	12A2p6	cell line	sgMsh2	78307833	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	18	0	0	NA	exonic	Tnfsf11	synonymous SNV	Tnfsf11:NM_011613:exon1:c.C57T:p.G19G	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9326447	TGC	synonymous	NA	NA	NA	NA
M7	chr14	79406895	12A2p6	cell line	sgMsh2	79406895	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	193	21	1	0.047619048	exonic	Mtrf1	synonymous SNV	Mtrf1:NM_145960:exon6:c.T642C:p.N214N	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.191450239	3	1.00E-09	ATT	synonymous	NA	NA	NA	NA
M7	chr14	79580479	12A2p6	cell line	sgMsh2	79580479	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	122	86	15	0.174418605	exonic	Elf1	synonymous SNV	"Elf1:NM_001286412:exon8:c.T1437C:p.S479S,Elf1:NM_001286411:exon9:c.T1548C:p.S516S,Elf1:NM_007920:exon9:c.T1548C:p.S516S"	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.273500341	3	0.9999393	GTG	synonymous	NA	NA	NA	NA
M7	chr14	79661991	12A2p6	cell line	sgMsh2	79661991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	59	0	0	NA	exonic	Cnmd	synonymous SNV	"Cnmd:NM_001310655:exon1:c.A21G:p.K7K,Cnmd:NM_010701:exon1:c.A21G:p.K7K"	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9929945	CTT	synonymous	NA	NA	NA	NA
M7	chr14	84446928	12A2p6	cell line	sgMsh2	84446928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	89	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.A834G:p.E278E	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9987153	AAG	synonymous	NA	NA	NA	NA
M7	chr14	84447017	12A2p6	cell line	sgMsh2	84447017	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	103	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G923A:p.G308D	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr14	84448442	12A2p6	cell line	sgMsh2	84448442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	38	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.T2348C:p.V783A	14qD3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	2	1	1	0.9773057	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr14	87472219	12A2p6	cell line	sgMsh2	87472219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	91	27	5	0.185185185	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon4:c.T336C:p.S112S,Tdrd3:NM_172605:exon4:c.T336C:p.S112S"	14qE1	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.998853	GTT	synonymous	NA	NA	NA	NA
M7	chr14	99040561	12A2p6	cell line	sgMsh2	99040561	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	132	110	1	0.009090909	exonic	Mzt1	nonsynonymous SNV	Mzt1:NM_175245:exon2:c.T170C:p.L57S	14qE2.2	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.214241934	3	3.23E-08	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr14	101458136	12A2p6	cell line	sgMsh2	101458136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	100	5	1	0.2	exonic	Tbc1d4	synonymous SNV	Tbc1d4:NM_001081278:exon14:c.T2676G:p.P892P	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9993113	GAG	synonymous	NA	NA	NA	NA
M7	chr14	103177262	12A2p6	cell line	sgMsh2	103177262	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	165	0	0	NA	exonic	Mycbp2	frameshift deletion	Mycbp2:NM_207215:exon53:c.7713delT:p.Q2573Rfs*13	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr14	103248510	12A2p6	cell line	sgMsh2	103248510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	71	22	8	0.363636364	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon22:c.T3114C:p.A1038A	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9964413	GAG	synonymous	NA	NA	NA	NA
M7	chr14	104479274	12A2p6	cell line	sgMsh2	104479274	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	66	19	4	0.210526316	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T1662G:p.G554G	14qE2.3	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9952797	AAC	synonymous	NA	NA	NA	NA
M7	chr14	115552293	12A2p6	cell line	sgMsh2	115552293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	103	0	0	NA	exonic	Gpc5	synonymous SNV	Gpc5:NM_175500:exon6:c.T1359C:p.P453P	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	CTG	synonymous	NA	NA	NA	NA
M7	chr14	120022532	12A2p6	cell line	sgMsh2	120022532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	105	0	0	NA	exonic	Oxgr1	nonsynonymous SNV	Oxgr1:NM_001001490:exon4:c.T262C:p.F88L	14qE4	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	1	1	0.9994813	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	121277034	12A2p6	cell line	sgMsh2	121277034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	34	49	13	0.265306122	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon24:c.T2774C:p.V925A	14qE5	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	1	0.939017839	1	0.9489547	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr14	122476082	12A2p6	cell line	sgMsh2	122476082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	13	0	0	NA	exonic	Zic2	nonsynonymous SNV	Zic2:NM_009574:exon1:c.A407G:p.H136R	14qE5	chr14-53336808-123291781	3	2	1	0.9	4.102505121	NA	2	1	1	0.9124567	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr14	123293438	12A2p6	cell line	sgMsh2	123293438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	187	1	0	0	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon37:c.A4187G:p.H1396R	14qE5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr14	123299215	12A2p6	cell line	sgMsh2	123299215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	62	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon32:c.A3623G:p.Q1208R	14qE5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr15	3320238	12A2p6	cell line	sgMsh2	3320238	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	235	233	13	0.055793991	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon11:c.T1457C:p.M486T,Ghr:NM_010284:exon11:c.T1457C:p.M486T"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	5176888	12A2p6	cell line	sgMsh2	5176888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	175	142	29	0.204225352	exonic	Prkaa1	nonsynonymous SNV	"Prkaa1:NM_001355640:exon6:c.T792G:p.H264Q,Prkaa1:NM_001013367:exon7:c.T1224G:p.H408Q"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.5307139	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr15	6827115	12A2p6	cell line	sgMsh2	6827115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	130	5	1	0.2	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon11:c.T1550C:p.M517T,Osmr:NM_011019:exon11:c.T1550C:p.M517T"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9821755	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	7185572	12A2p6	cell line	sgMsh2	7185572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	128	30	8	0.266666667	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.T2159C:p.I720T,Lifr:NM_013584:exon16:c.T2159C:p.I720T"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9998498	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr15	7303970	12A2p6	cell line	sgMsh2	7303970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	121	5	1	0.2	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon5:c.A500G:p.N167S,Egflam:NM_001289498:exon5:c.A55G:p.M19V,Egflam:NM_178748:exon5:c.A500G:p.N167S"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr15	8042785	12A2p6	cell line	sgMsh2	8042785	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	72	58	10	0.172413793	exonic	Wdr70	synonymous SNV	Wdr70:NM_001081402:exon7:c.C621T:p.Y207Y	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	CGT	synonymous	NA	NA	NA	NA
M7	chr15	8176258	12A2p6	cell line	sgMsh2	8176258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	155	15	3	0.2	exonic	Cplane1	synonymous SNV	Cplane1:NM_001162906:exon6:c.T477C:p.G159G	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	GTC	synonymous	NA	NA	NA	NA
M7	chr15	8228693	12A2p6	cell line	sgMsh2	8228693	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	55	13	5	0.384615385	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon34:c.C6422T:p.P2141L	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9837932	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr15	8351084	12A2p6	cell line	sgMsh2	8351084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	104	100	15	0.15	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon10:c.A2223G:p.E741E,Nipbl:NM_201232:exon10:c.A2223G:p.E741E"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	CTT	synonymous	GGCC	8	GGCCGGCC	NA
M7	chr15	8650879	12A2p6	cell line	sgMsh2	8650879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	120	0	0	NA	exonic	Slc1a3	nonsynonymous SNV	Slc1a3:NM_148938:exon4:c.C494T:p.T165I	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.656400819	2	0.9776407	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr15	10492812	12A2p6	cell line	sgMsh2	10492812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	258	63	12	0.19047619	exonic	Rad1	nonsynonymous SNV	"Rad1:NM_001289447:exon5:c.A614G:p.K205R,Rad1:NM_001289448:exon5:c.A614G:p.K205R,Rad1:NM_011232:exon5:c.A614G:p.K205R"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr15	10988924	12A2p6	cell line	sgMsh2	10988924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	76	22	6	0.272727273	exonic	Amacr	nonsynonymous SNV	Amacr:NM_008537:exon4:c.T715C:p.F239L	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.996213	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	120	38	14	0.368421053	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	12339738	12A2p6	cell line	sgMsh2	12339738	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	242	371	34	0.091644205	exonic	Golph3	frameshift deletion	Golph3:NM_025673:exon2:c.336delA:p.S114Vfs*2	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr15	12373410	12A2p6	cell line	sgMsh2	12373410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	107	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A6638G:p.K2213R	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9976147	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	12374447	12A2p6	cell line	sgMsh2	12374447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	68	0	0	NA	exonic	Pdzd2	synonymous SNV	Pdzd2:NM_001081064:exon21:c.A5601G:p.S1867S	15qA1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9957838	GTG	synonymous	NA	NA	NA	NA
M7	chr15	21358976	12A2p6	cell line	sgMsh2	21358976	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	133	0	0	NA	exonic	Cdh12	nonsynonymous SNV	Cdh12:NM_001008420:exon3:c.A485G:p.D162G	15qA2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9965916	GAT	nonsynonymous	TGGA	8	TGGATGGA	NA
M7	chr15	21558290	12A2p6	cell line	sgMsh2	21558290	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	147	0	0	NA	exonic	Cdh12	nonsynonymous SNV	Cdh12:NM_001008420:exon8:c.A1274C:p.K425T	15qA2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999521	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	21558330	12A2p6	cell line	sgMsh2	21558330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	158	0	0	NA	exonic	Cdh12	synonymous SNV	Cdh12:NM_001008420:exon8:c.A1314G:p.E438E	15qA2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.99757	AAG	synonymous	GGAA	8	GGAAGGAA	NA
M7	chr15	25701571	12A2p6	cell line	sgMsh2	25701571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	130	89	20	0.224719101	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon3:c.T130A:p.Y44N	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998744	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	25714110	12A2p6	cell line	sgMsh2	25714110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	98	94	23	0.244680851	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon4:c.T361C:p.Y121H	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	25742429	12A2p6	cell line	sgMsh2	25742429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	73	139	25	0.179856115	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon18:c.A1828G:p.T610A	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.8974033	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	27833070	12A2p6	cell line	sgMsh2	27833070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	87	35	8	0.228571429	exonic	Trio	synonymous SNV	Trio:NM_001081302:exon22:c.A3657G:p.K1219K	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.65184248	2	0.9179147	ATT	synonymous	T	5	TTTTT	NA
M7	chr15	28229600	12A2p6	cell line	sgMsh2	28229600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	133	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon4:c.T379C:p.C127R	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.355550444	3	0.7860493	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr15	28326571	12A2p6	cell line	sgMsh2	28326571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon36:c.T5925C:p.P1975P	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9964048	CTG	synonymous	NA	NA	NA	NA
M7	chr15	28367729	12A2p6	cell line	sgMsh2	28367729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	61	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon50:c.G8259A:p.S2753S	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	CGG	synonymous	NA	NA	NA	NA
M7	chr15	28378421	12A2p6	cell line	sgMsh2	28378421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	115	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon53:c.T8902C:p.F2968L	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M7	chr15	28411635	12A2p6	cell line	sgMsh2	28411635	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.208	82	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.G11149A:p.V3717M	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9933152	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr15	28445079	12A2p6	cell line	sgMsh2	28445079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	158	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon72:c.T12360C:p.H4120H	15qB1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	ATG	synonymous	NA	NA	NA	NA
M7	chr15	30775195	12A2p6	cell line	sgMsh2	30775195	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	81	0	0	NA	exonic	Ctnnd2	nonsynonymous SNV	"Ctnnd2:NM_001355502:exon10:c.A1713T:p.Q571H,Ctnnd2:NM_008729:exon10:c.A1713T:p.Q571H"	15qB2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.5924663	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	30905701	12A2p6	cell line	sgMsh2	30905701	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.407	70	0	0	NA	exonic	Ctnnd2	frameshift deletion	"Ctnnd2:NM_001355502:exon15:c.2493delA:p.I834Sfs*8,Ctnnd2:NM_008729:exon15:c.2493delA:p.I834Sfs*8"	15qB2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr15	31616962	12A2p6	cell line	sgMsh2	31616962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	53	19	4	0.210526316	exonic	Atpsckmt	nonsynonymous SNV	"Atpsckmt:NM_026546:exon5:c.A572G:p.D191G,Atpsckmt:NM_001356313:exon6:c.A338G:p.D113G"	15qB2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	GAC	nonsynonymous	ACCAC	10	ACCACACCAC	NA
M7	chr15	33028073	12A2p6	cell line	sgMsh2	33028073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	121	95	18	0.189473684	exonic	Sdc2	synonymous SNV	Sdc2:NM_008304:exon4:c.A336G:p.E112E	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.692867532	2	0.9253928	AAG	synonymous	NA	NA	NA	NA
M7	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	213	39	3	0.076923077	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M7	chr15	34839911	12A2p6	cell line	sgMsh2	34839911	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	141	0	0	NA	exonic	Kcns2	synonymous SNV	"Kcns2:NM_001271704:exon2:c.T1419C:p.D473D,Kcns2:NM_181317:exon2:c.T1419C:p.D473D"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	ATG	synonymous	NA	NA	NA	NA
M7	chr15	35372084	12A2p6	cell line	sgMsh2	35372084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	146	19	5	0.263157895	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T124G:p.L42V	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9949778	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	35378909	12A2p6	cell line	sgMsh2	35378909	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	91	35	5	0.142857143	exonic	Vps13b	frameshift deletion	Vps13b:NM_177151:exon3:c.168delT:p.L58fs*0	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr15	35770656	12A2p6	cell line	sgMsh2	35770656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	130	19	5	0.263157895	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon36:c.A6244G:p.T2082A	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998744	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	35869439	12A2p6	cell line	sgMsh2	35869439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	62	14	1	0.071428571	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon44:c.A8088G:p.K2696K	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9805948	AAC	synonymous	A	5	AAAAA	NA
M7	chr15	36245599	12A2p6	cell line	sgMsh2	36245599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	80	52	8	0.153846154	exonic	Rnf19a	nonsynonymous SNV	Rnf19a:NM_013923:exon8:c.A1499G:p.N500S	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	38002574	12A2p6	cell line	sgMsh2	38002574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	187	117	36	0.307692308	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon33:c.T4332C:p.A1444A,Ubr5:NM_001112721:exon33:c.T4314C:p.A1438A"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9991581	AAG	synonymous	NA	NA	NA	NA
M7	chr15	38018942	12A2p6	cell line	sgMsh2	38018942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	98	96	23	0.239583333	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon19:c.T2364C:p.S788S,Ubr5:NM_001112721:exon19:c.T2346C:p.S782S"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9682582	CAC	synonymous	NA	NA	NA	NA
M7	chr15	38037822	12A2p6	cell line	sgMsh2	38037822	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	154	129	23	0.178294574	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon9:c.T1092C:p.P364P,Ubr5:NM_001112721:exon9:c.T1074C:p.P358P"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9997224	CAG	synonymous	NA	NA	NA	NA
M7	chr15	38037973	12A2p6	cell line	sgMsh2	38037973	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	103	17	0.165048544	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon9:c.T941C:p.V314A,Ubr5:NM_001112721:exon9:c.T923C:p.V308A"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9892954	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	38297789	12A2p6	cell line	sgMsh2	38297789	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	112	151	28	0.185430464	exonic	Klf10	nonsynonymous SNV	"Klf10:NM_001289471:exon2:c.G100A:p.E34K,Klf10:NM_001357677:exon2:c.G79A:p.E27K,Klf10:NM_013692:exon2:c.G100A:p.E34K"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9983312	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr15	41101450	12A2p6	cell line	sgMsh2	41101450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	162	75	10	0.133333333	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A1171G:p.K391E,Zfpm2:NM_011766:exon8:c.A1330G:p.K444E"	15qB3.1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9709344	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr15	43263297	12A2p6	cell line	sgMsh2	43263297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	147	1438	342	0.23783032	exonic	Eif3e	nonsynonymous SNV	Eif3e:NM_008388:exon8:c.T761C:p.L254P	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999521	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	43511750	12A2p6	cell line	sgMsh2	43511750	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	250	179	37	0.206703911	exonic	Emc2	synonymous SNV	Emc2:NM_025736:exon9:c.T642C:p.Y214Y	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.9456726	ATT	synonymous	NA	NA	NA	NA
M7	chr15	44396628	12A2p6	cell line	sgMsh2	44396628	A	G	SNV	Mutect2;Vardict	2	0.036	160	141	7	0.04964539	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon7:c.T1050C:p.N350N,Nudcd1:NM_026149:exon7:c.T1053C:p.N351N"	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1.00E-09	CAT	synonymous	TTC	8	TTCTTCTT	NA
M7	chr15	44400220	12A2p6	cell line	sgMsh2	44400220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	171	23	0.134502924	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon6:c.T822C:p.P274P,Nudcd1:NM_026149:exon6:c.T825C:p.P275P"	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GAG	synonymous	NA	NA	NA	NA
M7	chr15	44528272	12A2p6	cell line	sgMsh2	44528272	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	128	6	0	0	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon37:c.A4733G:p.N1578S	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9996441	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	44547035	12A2p6	cell line	sgMsh2	44547035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	166	6	2	0.333333333	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.T7937G:p.I2646S	15qB3.2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999837	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr15	47590714	12A2p6	cell line	sgMsh2	47590714	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	90	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon68:c.G10735A:p.G3579R	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	CCA	nonsynonymous	ATCC	10	ATCCATCCAT	NA
M7	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	102	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	47698117	12A2p6	cell line	sgMsh2	47698117	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	89	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon43:c.T6795A:p.L2265L	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	GAA	synonymous	NA	NA	NA	NA
M7	chr15	47755456	12A2p6	cell line	sgMsh2	47755456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	196	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon34:c.T5535C:p.G1845G	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.711100888	2	0.9823283	TAC	synonymous	NA	NA	NA	NA
M7	chr15	47976963	12A2p6	cell line	sgMsh2	47976963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	62	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon18:c.A2907G:p.Q969Q	15qB3.3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.692867532	2	0.6240248	CTT	synonymous	NA	NA	NA	NA
M7	chr15	54598538	12A2p6	cell line	sgMsh2	54598538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	104	120	20	0.166666667	exonic	Mal2	nonsynonymous SNV	Mal2:NM_178920:exon3:c.A428G:p.N143S	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	56668003	12A2p6	cell line	sgMsh2	56668003	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	180	7	2	0.285714286	exonic	Has2	nonsynonymous SNV	Has2:NM_008216:exon4:c.T1315C:p.Y439H	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9813419	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	58889378	12A2p6	cell line	sgMsh2	58889378	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	62	20	6	0.3	exonic	Rnf139	nonsynonymous SNV	Rnf139:NM_175226:exon1:c.T65G:p.L22R	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9117154	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr15	60823380	12A2p6	cell line	sgMsh2	60823380	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	40	12	2	0.166666667	exonic	Lratd2	synonymous SNV	Lratd2:NM_001162926:exon2:c.C516T:p.R172R	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9283588	AGC	synonymous	NA	NA	NA	NA
M7	chr15	60823463	12A2p6	cell line	sgMsh2	60823463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	69	16	5	0.3125	exonic	Lratd2	nonsynonymous SNV	Lratd2:NM_001162926:exon2:c.T433A:p.L145M	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr15	65845945	12A2p6	cell line	sgMsh2	65845945	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	69	131	22	0.167938931	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon9:c.G784A:p.G262R,Efr3a:NM_133766:exon9:c.G892A:p.G298R"	15qD1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9763171	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr15	66532791	12A2p6	cell line	sgMsh2	66532791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	156	24	6	0.25	exonic	Tmem71	synonymous SNV	Tmem71:NM_172514:exon8:c.A747G:p.L249L	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999713	CTA	synonymous	NA	NA	NA	NA
M7	chr15	66604238	12A2p6	cell line	sgMsh2	66604238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	80	65	12	0.184615385	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon7:c.T719C:p.F240S	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	66759529	12A2p6	cell line	sgMsh2	66759529	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	131	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon37:c.A6503G:p.H2168R	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.259825324	3	0.999994	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	68178774	12A2p6	cell line	sgMsh2	68178774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	72	11	3	0.272727273	exonic	Zfat	synonymous SNV	"Zfat:NM_001145888:exon7:c.C2397A:p.G799G,Zfat:NM_198644:exon7:c.C2376A:p.G792G"	15qD2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	AGC	synonymous	NA	NA	NA	NA
M7	chr15	71452455	12A2p6	cell line	sgMsh2	71452455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	194	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon17:c.T3662C:p.I1221T	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999967	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	71463845	12A2p6	cell line	sgMsh2	71463845	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	137	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon13:c.A1499T:p.Y500F	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.209683595	3	1.02E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	71952562	12A2p6	cell line	sgMsh2	71952562	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	119	0	0	NA	exonic	Col22a1	synonymous SNV	Col22a1:NM_027174:exon13:c.A1632T:p.P544P	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	GTG	synonymous	NA	NA	NA	NA
M7	chr15	73800224	12A2p6	cell line	sgMsh2	73800224	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	32	0	0	NA	exonic	Mroh5	nonsynonymous SNV	"Mroh5:NM_001033365:exon3:c.G64A:p.A22T,Mroh5:NM_001368162:exon3:c.G64A:p.A22T"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9683943	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
M7	chr15	74575898	12A2p6	cell line	sgMsh2	74575898	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	122	0	0	NA	exonic	Adgrb1	synonymous SNV	"Adgrb1:NM_001359759:exon24:c.G1443A:p.T481T,Adgrb1:NM_174991:exon24:c.G3372A:p.T1124T"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9892192	CGG	synonymous	NA	NA	NA	NA
M7	chr15	74751320	12A2p6	cell line	sgMsh2	74751320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	2	0	0	exonic	Lynx1	nonsynonymous SNV	Lynx1:NM_011838:exon4:c.T262C:p.Y88H	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	74839366	12A2p6	cell line	sgMsh2	74839366	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	121	0	0	NA	exonic	Cyp11b1	nonsynonymous SNV	Cyp11b1:NM_001033229:exon3:c.A462C:p.K154N	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	75565666	12A2p6	cell line	sgMsh2	75565666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	61	0	0	NA	exonic	Ly6h	nonsynonymous SNV	"Ly6h:NM_001135688:exon3:c.C101T:p.A34V,Ly6h:NM_001135689:exon3:c.C101T:p.A34V,Ly6h:NM_011837:exon3:c.C164T:p.A55V"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9929955	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr15	75712300	12A2p6	cell line	sgMsh2	75712300	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	40	0	0	NA	exonic	Rhpn1	synonymous SNV	"Rhpn1:NM_001163465:exon11:c.G1275A:p.A425A,Rhpn1:NM_008164:exon11:c.G1275A:p.A425A"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9796905	CGC	synonymous	NA	NA	NA	NA
M7	chr15	75757546	12A2p6	cell line	sgMsh2	75757546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	100	2	0	0	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.T2471C:p.V824A	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9963578	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	75903359	12A2p6	cell line	sgMsh2	75903359	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	84	3	1	0.333333333	exonic	Eef1d	synonymous SNV	Eef1d:NM_029663:exon3:c.G450A:p.P150P	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	GCG	synonymous	GGCTG	10	GGCTGGGCTG	NA
M7	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	89	50	13	0.26	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9987153	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr15	76067353	12A2p6	cell line	sgMsh2	76067353	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	124	64	17	0.265625	exonic	Scrib	nonsynonymous SNV	"Scrib:NM_001310542:exon4:c.G383A:p.R128H,Scrib:NM_001310543:exon4:c.G383A:p.R128H,Scrib:NM_134089:exon4:c.G383A:p.R128H"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr15	76072306	12A2p6	cell line	sgMsh2	76072306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	174	178	37	0.207865169	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon6:c.A350G:p.Y117C,Puf60:NM_001378985:exon6:c.A491G:p.Y164C,Puf60:NM_133691:exon6:c.A494G:p.Y165C,Puf60:NM_001378984:exon7:c.A542G:p.Y181C,Puf60:NM_001378986:exon7:c.A473G:p.Y158C,Puf60:NM_028364:exon7:c.A545G:p.Y182C,Puf60:NM_001356629:exon8:c.A524G:p.Y175C"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	76072463	12A2p6	cell line	sgMsh2	76072463	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	79	233	56	0.240343348	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon5:c.T274C:p.F92L,Puf60:NM_001378985:exon5:c.T415C:p.F139L,Puf60:NM_133691:exon5:c.T418C:p.F140L,Puf60:NM_001378984:exon6:c.T466C:p.F156L,Puf60:NM_001378986:exon6:c.T397C:p.F133L,Puf60:NM_028364:exon6:c.T469C:p.F157L,Puf60:NM_001356629:exon7:c.T448C:p.F150L"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	76077616	12A2p6	cell line	sgMsh2	76077616	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	32	118	15	0.127118644	exonic	Puf60	synonymous SNV	"Puf60:NM_001378984:exon2:c.A108G:p.K36K,Puf60:NM_001378985:exon2:c.A108G:p.K36K,Puf60:NM_028364:exon2:c.A111G:p.K37K,Puf60:NM_133691:exon2:c.A111G:p.K37K,Puf60:NM_001356629:exon3:c.A90G:p.K30K,Puf60:NM_001378986:exon3:c.A90G:p.K30K"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9683943	ATT	synonymous	NA	NA	NA	NA
M7	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	149	6	4	0.666666667	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9896579	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	76108981	12A2p6	cell line	sgMsh2	76108981	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	72	1	0	0	exonic	Eppk1	synonymous SNV	Eppk1:NM_144848:exon2:c.C3699A:p.G1233G	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.670075836	2	0.7913069	TGC	synonymous	NA	NA	NA	NA
M7	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	123	175	54	0.308571429	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	GCG	synonymous	NA	NA	NA	NA
M7	chr15	76175643	12A2p6	cell line	sgMsh2	76175643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	54	150	27	0.18	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.G10246A:p.A3416T,Plec:NM_201385:exon32:c.G10132A:p.A3378T,Plec:NM_201386:exon32:c.G10093A:p.A3365T,Plec:NM_201387:exon32:c.G9688A:p.A3230T,Plec:NM_201388:exon32:c.G9688A:p.A3230T,Plec:NM_201389:exon32:c.G10588A:p.A3530T,Plec:NM_201390:exon32:c.G10063A:p.A3355T,Plec:NM_201391:exon32:c.G10159A:p.A3387T,Plec:NM_201392:exon32:c.G9688A:p.A3230T,Plec:NM_201393:exon32:c.G10180A:p.A3394T,Plec:NM_201394:exon32:c.G10159A:p.A3387T,Plec:NM_001163540:exon33:c.G10603A:p.A3535T,Plec:NM_001163549:exon33:c.G10174A:p.A3392T,Plec:NM_001163542:exon34:c.G10297A:p.A3433T,Plec:NM_001164203:exon34:c.G9688A:p.A3230T"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9907182	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr15	76268180	12A2p6	cell line	sgMsh2	76268180	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	0	0	NA	exonic	Spatc1	synonymous SNV	Spatc1:NM_028852:exon1:c.A9G:p.L3L	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9760128	TAC	synonymous	NA	NA	NA	NA
M7	chr15	76373089	12A2p6	cell line	sgMsh2	76373089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	62	0	0	NA	exonic	Tssk5	nonsynonymous SNV	Tssk5:NM_183099:exon5:c.T673C:p.Y225H	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.65184248	2	0.7788211	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	76433556	12A2p6	cell line	sgMsh2	76433556	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	131	72	2	0.027777778	exonic	Mroh1	frameshift deletion	"Mroh1:NM_001162489:exon24:c.2464delC:p.P823Qfs*3,Mroh1:NM_175457:exon26:c.2491delC:p.P832Qfs*2"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.879759432	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr15	76436108	12A2p6	cell line	sgMsh2	76436108	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	110	72	4	0.055555556	exonic	Mroh1	synonymous SNV	"Mroh1:NM_001162489:exon29:c.C3081T:p.S1027S,Mroh1:NM_175457:exon31:c.C3108T:p.S1036S"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	GCA	synonymous	NA	NA	NA	NA
M7	chr15	76458086	12A2p6	cell line	sgMsh2	76458086	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	30	11	3	0.272727273	exonic	Scx	nonsynonymous SNV	Scx:NM_198885:exon1:c.T485G:p.L162R	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9647308	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr15	76599550	12A2p6	cell line	sgMsh2	76599550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	141	96	32	0.333333333	exonic	Cpsf1	nonsynonymous SNV	"Cpsf1:NM_001164173:exon22:c.G2492A:p.R831Q,Cpsf1:NM_001361485:exon22:c.G2039A:p.R680Q,Cpsf1:NM_053193:exon22:c.G2492A:p.R831Q"	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.60625909	2	0.9988995	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr15	76638151	12A2p6	cell line	sgMsh2	76638151	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	84	17	1	0.058823529	exonic	Tonsl	nonsynonymous SNV	Tonsl:NM_183091:exon6:c.G641A:p.R214H	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.223358612	3	0.9999564	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr15	76708547	12A2p6	cell line	sgMsh2	76708547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	105	6	0	0	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon6:c.T1222C:p.C408R	15qD3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9860039	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	77635321	12A2p6	cell line	sgMsh2	77635321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	178	0	0	NA	exonic	Apol11b	synonymous SNV	Apol11b:NM_001143686:exon4:c.T558C:p.S186S	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999917	CAG	synonymous	NA	NA	NA	NA
M7	chr15	78781167	12A2p6	cell line	sgMsh2	78781167	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	36	60	7	0.116666667	exonic	Card10	synonymous SNV	Card10:NM_130859:exon14:c.T2085A:p.T695T	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9746481	CAG	synonymous	NA	NA	NA	NA
M7	chr15	78851054	12A2p6	cell line	sgMsh2	78851054	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	92	60	1	0.016666667	exonic	Lgals2	nonsynonymous SNV	Lgals2:NM_025622:exon4:c.T346A:p.Y116N	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.287175358	3	0.9976245	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	79036041	12A2p6	cell line	sgMsh2	79036041	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	80	71	24	0.338028169	exonic	Gcat	synonymous SNV	"Gcat:NM_001161712:exon6:c.T744C:p.G248G,Gcat:NM_013847:exon6:c.T744C:p.G248G"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	GTG	synonymous	NA	NA	NA	NA
M7	chr15	79089912	12A2p6	cell line	sgMsh2	79089912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	124	349	78	0.223495702	exonic	Eif3l	nonsynonymous SNV	Eif3l:NM_145139:exon11:c.T1526C:p.L509P	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9878686	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	79129918	12A2p6	cell line	sgMsh2	79129918	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	54	28	6	0.214285714	exonic	Micall1	nonsynonymous SNV	Micall1:NM_177461:exon10:c.A2012T:p.H671L	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9630265	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	79620739	12A2p6	cell line	sgMsh2	79620739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	107	2	0	0	exonic	Fam227a	nonsynonymous SNV	Fam227a:NM_029407:exon15:c.A1502C:p.N501T	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	79727109	12A2p6	cell line	sgMsh2	79727109	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.203	76	40	10	0.25	exonic	Sun2	nonsynonymous SNV	"Sun2:NM_194342:exon14:c.T1667A:p.L556H,Sun2:NM_001205345:exon15:c.T1763A:p.L588H,Sun2:NM_001205346:exon15:c.T1757A:p.L586H"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9858059	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	80956273	12A2p6	cell line	sgMsh2	80956273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	282	139	33	0.237410072	exonic	Adsl	synonymous SNV	Adsl:NM_009634:exon4:c.T463C:p.L155L	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	2.36E-08	GTT	synonymous	NA	NA	NA	NA
M7	chr15	81946849	12A2p6	cell line	sgMsh2	81946849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	38	3	0	0	exonic	Csdc2	synonymous SNV	Csdc2:NM_145473:exon2:c.T96C:p.S32S	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.688309193	1	6.86E-06	GTA	synonymous	NA	NA	NA	NA
M7	chr15	82037539	12A2p6	cell line	sgMsh2	82037539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	107	186	37	0.198924731	exonic	Xrcc6	synonymous SNV	Xrcc6:NM_010247:exon12:c.T1599C:p.N533N	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9976147	ATC	synonymous	NA	NA	NA	NA
M7	chr15	82286498	12A2p6	cell line	sgMsh2	82286498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	175	2	0	0	exonic	Septin3	nonsynonymous SNV	"Septin3:NM_001368647:exon6:c.A539G:p.D180G,Septin3:NM_001358836:exon7:c.A731G:p.D244G,Septin3:NM_001358837:exon7:c.A731G:p.D244G,Septin3:NM_001368642:exon7:c.A731G:p.D244G,Septin3:NM_001368643:exon7:c.A731G:p.D244G,Septin3:NM_001368644:exon7:c.A692G:p.D231G,Septin3:NM_001368645:exon7:c.A692G:p.D231G,Septin3:NM_001368646:exon7:c.A692G:p.D231G,Septin3:NM_011889:exon7:c.A692G:p.D231G,Septin3:NM_001368784:exon8:c.A2135G:p.D712G,Septin3:NM_001368785:exon8:c.A2135G:p.D712G"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9749452	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	82558930	12A2p6	cell line	sgMsh2	82558930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	164	0	0	NA	exonic	Cyp2d12	nonsynonymous SNV	"Cyp2d12:NM_001355665:exon7:c.C1039T:p.L347F,Cyp2d12:NM_201360:exon8:c.C1192T:p.L398F"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999817	CCT	nonsynonymous	TCC	9	TCCTCCTCC	NA
M7	chr15	82616437	12A2p6	cell line	sgMsh2	82616437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	151	0	0	NA	exonic	Cyp2d34	frameshift deletion	Cyp2d34:NM_145474:exon8:c.1200delC:p.N401Tfs*5	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.856967736	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7	chr15	82617507	12A2p6	cell line	sgMsh2	82617507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	115	0	0	NA	exonic	Cyp2d34	synonymous SNV	Cyp2d34:NM_145474:exon5:c.T801C:p.P267P	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	CAG	synonymous	NA	NA	NA	NA
M7	chr15	82854799	12A2p6	cell line	sgMsh2	82854799	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	146	148	31	0.209459459	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.C2450A:p.P817H,Tcf20:NM_013836:exon2:c.C2450A:p.P817H"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.9491786	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr15	83324107	12A2p6	cell line	sgMsh2	83324107	T	-	Deletion	Strelka2;Vardict	2	0.2128	94	35	0	0	exonic	Arfgap3	frameshift deletion	"Arfgap3:NM_001357756:exon8:c.672delA:p.G225Dfs*13,Arfgap3:NM_001357757:exon8:c.669delA:p.G224Dfs*13,Arfgap3:NM_025445:exon8:c.669delA:p.G224Dfs*13"	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.970014544	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr15	83549321	12A2p6	cell line	sgMsh2	83549321	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	50	37	0	0	exonic	Mcat	stopgain	Mcat:NM_001030014:exon3:c.A520T:p.K174X	15qE1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9883813	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr15	83973281	12A2p6	cell line	sgMsh2	83973281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	120	0	0	NA	exonic	Efcab6	nonsynonymous SNV	Efcab6:NM_029946:exon9:c.T916C:p.Y306H	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.601700751	2	0.9967275	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	84105443	12A2p6	cell line	sgMsh2	84105443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	35	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T157C:p.Y53H,Sult4a1:NM_013873:exon1:c.T157C:p.Y53H"	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.733892583	1	0.6981182	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	84122566	12A2p6	cell line	sgMsh2	84122566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	36	0	0	NA	exonic	Pnpla5	nonsynonymous SNV	Pnpla5:NM_029427:exon2:c.T215C:p.L72P	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8624079	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	116	270	61	0.225925926	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr15	84303416	12A2p6	cell line	sgMsh2	84303416	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	87	177	38	0.214689266	exonic	Parvb	nonsynonymous SNV	Parvb:NM_133167:exon9:c.G724A:p.A242T	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr15	84935251	12A2p6	cell line	sgMsh2	84935251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	198	37	0.186868687	exonic	Nup50	nonsynonymous SNV	Nup50:NM_016714:exon5:c.A725G:p.K242R	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr15	85230884	12A2p6	cell line	sgMsh2	85230884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	79	46	12	0.260869565	exonic	Fbln1	synonymous SNV	"Fbln1:NM_001347088:exon6:c.T636C:p.D212D,Fbln1:NM_010180:exon6:c.T636C:p.D212D"	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.80308	ATG	synonymous	NA	NA	NA	NA
M7	chr15	85393384	12A2p6	cell line	sgMsh2	85393384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	171	582	136	0.233676976	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1051C:p.F351L	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	85393457	12A2p6	cell line	sgMsh2	85393457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	179	535	107	0.2	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1124C:p.I375T	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999922	ATC	nonsynonymous	TCTCA	12	TCTCATCTCATC	NA
M7	chr15	85816500	12A2p6	cell line	sgMsh2	85816500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	276	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T5234C:p.V1745A	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	3.28E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	85816891	12A2p6	cell line	sgMsh2	85816891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	132	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T4843C:p.F1615L	15qE2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9985534	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	88914616	12A2p6	cell line	sgMsh2	88914616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	63	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon12:c.C1321T:p.P441S,Ttll8:NM_172818:exon12:c.C1915T:p.P639S"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9126557	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr15	89100895	12A2p6	cell line	sgMsh2	89100895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	83	19	5	0.263157895	exonic	Tubgcp6	synonymous SNV	Tubgcp6:NM_001163319:exon23:c.T4989C:p.H1663H	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	CAT	synonymous	NA	NA	NA	NA
M7	chr15	89126404	12A2p6	cell line	sgMsh2	89126404	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	156	5	0	0	exonic	Hdac10	nonsynonymous SNV	Hdac10:NM_199198:exon9:c.T790G:p.F264V	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.173216883	3	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	89365257	12A2p6	cell line	sgMsh2	89365259	GAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	67	304	40	0.131578947	exonic	Ncaph2	nonframeshift deletion	"Ncaph2:NM_001115132:exon9:c.763_765del:p.E256del,Ncaph2:NM_001271600:exon9:c.670_672del:p.E225del,Ncaph2:NM_001271601:exon9:c.763_765del:p.E256del"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.528767327	NA	NA	AGA	inframe	GAG	8	GAGGAGGA	-3
M7	chr15	89373970	12A2p6	cell line	sgMsh2	89373970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	29	2	1	0.5	exonic	Tymp	nonsynonymous SNV	Tymp:NM_138302:exon8:c.A1079G:p.H360R	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9627488	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr15	89473427	12A2p6	cell line	sgMsh2	89473427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	52	70	19	0.271428571	exonic	Arsa	nonsynonymous SNV	Arsa:NM_009713:exon9:c.A1332G:p.I444M	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9814702	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	89569857	12A2p6	cell line	sgMsh2	89569857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	118	0	0	NA	exonic	Acr	synonymous SNV	"Acr:NM_001205049:exon3:c.T396C:p.H132H,Acr:NM_001277245:exon3:c.T228C:p.H76H,Acr:NM_001277246:exon3:c.T228C:p.H76H,Acr:NM_001277247:exon3:c.T270C:p.H90H,Acr:NM_013455:exon3:c.T396C:p.H132H"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9837864	ATG	synonymous	NA	NA	NA	NA
M7	chr15	90934520	12A2p6	cell line	sgMsh2	90934520	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	122	23	3	0.130434783	exonic	Kif21a	frameshift deletion	"Kif21a:NM_001109042:exon33:c.4634delA:p.K1545Rfs*34,Kif21a:NM_016705:exon33:c.4652delA:p.K1551Rfs*34,Kif21a:NM_001358050:exon34:c.4742delA:p.K1581Rfs*34,Kif21a:NM_001109041:exon36:c.4817delA:p.K1606Rfs*34,Kif21a:NM_001109040:exon37:c.4949delA:p.K1650Rfs*34"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.961809534	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr15	92255968	12A2p6	cell line	sgMsh2	92255968	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	138	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon13:c.A1501C:p.I501L,Cntn1:NM_001159648:exon13:c.A1501C:p.I501L,Cntn1:NM_007727:exon13:c.A1501C:p.I501L,Cntn1:NM_001358051:exon15:c.A1501C:p.I501L"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9993378	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	93501215	12A2p6	cell line	sgMsh2	93501215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	167	12	1	0.083333333	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon8:c.A1731G:p.K577K,Prickle1:NM_001364846:exon8:c.A1731G:p.K577K"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999846	TTT	synonymous	NA	NA	NA	NA
M7	chr15	93503313	12A2p6	cell line	sgMsh2	93503313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	96	9	1	0.111111111	exonic	Prickle1	nonsynonymous SNV	"Prickle1:NM_001033217:exon7:c.A1289G:p.Q430R,Prickle1:NM_001364846:exon7:c.A1289G:p.Q430R"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr15	94338749	12A2p6	cell line	sgMsh2	94338749	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	79	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon17:c.T2389G:p.S797A,Adamts20:NM_177431:exon17:c.T2389G:p.S797A"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9977367	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	94353613	12A2p6	cell line	sgMsh2	94353613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	103	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon9:c.T1292C:p.L431P,Adamts20:NM_001164786:exon9:c.T1292C:p.L431P,Adamts20:NM_177431:exon9:c.T1292C:p.L431P"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9985927	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	94355362	12A2p6	cell line	sgMsh2	94355362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	58	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon8:c.T1129A:p.C377S,Adamts20:NM_001164786:exon8:c.T1129A:p.C377S,Adamts20:NM_177431:exon8:c.T1129A:p.C377S"	15qE3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9925886	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	96370823	12A2p6	cell line	sgMsh2	96370823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	146	40	13	0.325	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon15:c.A2816G:p.Y939C	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	97245313	12A2p6	cell line	sgMsh2	97245313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	143	0	0	NA	exonic	Amigo2	synonymous SNV	"Amigo2:NM_178114:exon1:c.A1227T:p.I409I,Amigo2:NM_001164563:exon2:c.A1227T:p.I409I,Amigo2:NM_001164602:exon2:c.A1227T:p.I409I"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	CTA	synonymous	NA	NA	NA	NA
M7	chr15	97719565	12A2p6	cell line	sgMsh2	97719565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	139	0	0	NA	exonic	Endou	nonsynonymous SNV	"Endou:NM_008902:exon4:c.A629G:p.N210S,Endou:NM_001168693:exon5:c.A503G:p.N168S"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999246	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	97761220	12A2p6	cell line	sgMsh2	97761220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	48	13	2	0.153846154	exonic	Rapgef3	stopgain	"Rapgef3:NM_001177810:exon5:c.C390A:p.C130X,Rapgef3:NM_001177811:exon5:c.C390A:p.C130X,Rapgef3:NM_001357630:exon5:c.C390A:p.C130X,Rapgef3:NM_144850:exon5:c.C390A:p.C130X"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr15	98187072	12A2p6	cell line	sgMsh2	98187072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	283	0	0	NA	exonic	Olfr288	nonsynonymous SNV	Olfr288:NM_001011733:exon3:c.A724G:p.R242G	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	2.24E-08	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	98313094	12A2p6	cell line	sgMsh2	98313094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	0	0	NA	exonic	Olfr257;Olfr285	nonsynonymous SNV	"Olfr285:NM_001011778:exon1:c.T455C:p.L152P,Olfr257:NM_207554:exon1:c.T455C:p.L152P"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9989986	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	98340451	12A2p6	cell line	sgMsh2	98340451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	85	0	0	NA	exonic	Olfr284	synonymous SNV	Olfr284:NM_146281:exon1:c.T489C:p.S163S	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9983886	AAC	synonymous	NA	NA	NA	NA
M7	chr15	98497551	12A2p6	cell line	sgMsh2	98497551	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	85	0	0	NA	exonic	Olfr279	frameshift deletion	Olfr279:NM_001001807:exon1:c.78delC:p.F28Lfs*4	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.843292719	NA	NA	TCC	frameshift	NA	NA	NA	-1
M7	chr15	98835241	12A2p6	cell line	sgMsh2	98835241	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	77	86	23	0.26744186	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon52:c.A16432T:p.I5478F	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9973642	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr15	99037585	12A2p6	cell line	sgMsh2	99037585	A	G	SNV	Mutect2;Vardict	2	0.059	163	105	4	0.038095238	exonic	Tuba1c	nonsynonymous SNV	Tuba1c:NM_009448:exon4:c.A926G:p.H309R	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.268942002	3	0.9999991	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	99426064	12A2p6	cell line	sgMsh2	99426064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	60	7	0	0	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2557G:p.T853A	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9933783	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	99426306	12A2p6	cell line	sgMsh2	99426306	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	73	7	0	0	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2315C:p.K772T	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8289648	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	99524793	12A2p6	cell line	sgMsh2	99524793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	39	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon2:c.A122G:p.E41G,Faim2:NM_028224:exon2:c.A122G:p.E41G"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9785304	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr15	99699089	12A2p6	cell line	sgMsh2	99699089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	120	6	2	0.333333333	exonic	Asic1	nonsynonymous SNV	"Asic1:NM_001289791:exon10:c.T1631C:p.I544T,Asic1:NM_009597:exon12:c.T1532C:p.I511T"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr15	99929889	12A2p6	cell line	sgMsh2	99929889	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	121	0	0	NA	exonic	Fam186a	synonymous SNV	Fam186a:NM_028180:exon2:c.G54A:p.R18R	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9996369	GCC	synonymous	NA	NA	NA	NA
M7	chr15	99929906	12A2p6	cell line	sgMsh2	99929906	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	111	0	0	NA	exonic	Fam186a	nonsynonymous SNV	Fam186a:NM_028180:exon2:c.T37C:p.F13L	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	99993387	12A2p6	cell line	sgMsh2	99993387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	187	65	15	0.230769231	exonic	Larp4	nonsynonymous SNV	"Larp4:NM_001024526:exon7:c.A692G:p.N231S,Larp4:NM_001080948:exon7:c.A689G:p.N230S,Larp4:NM_001284521:exon7:c.A515G:p.N172S,Larp4:NM_001284522:exon7:c.A686G:p.N229S,Larp4:NM_001284523:exon7:c.A695G:p.N232S"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9961912	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr15	100528446	12A2p6	cell line	sgMsh2	100528446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	168	27	7	0.259259259	exonic	Tfcp2	nonsynonymous SNV	"Tfcp2:NM_001289603:exon3:c.A223G:p.T75A,Tfcp2:NM_001355497:exon3:c.A223G:p.T75A,Tfcp2:NM_033476:exon3:c.A223G:p.T75A"	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9928811	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr15	101274241	12A2p6	cell line	sgMsh2	101274241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	209	39	9	0.230769231	exonic	Nr4a1	synonymous SNV	Nr4a1:NM_010444:exon7:c.T1795C:p.L599L	15qF1	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999972	ATT	synonymous	NA	NA	NA	NA
M7	chr15	101460136	12A2p6	cell line	sgMsh2	101460136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	72	0	0	NA	exonic	Krt81;Krt85	nonsynonymous SNV	Krt81:NM_001166157:exon7:c.G1235A:p.G412D	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	2	1	1	0.9966369	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr15	101568091	12A2p6	cell line	sgMsh2	101568091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	68	1	0	0	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon7:c.A1238G:p.K413R	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9870041	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	101568342	12A2p6	cell line	sgMsh2	101568342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	106	0	0	NA	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon6:c.A1111G:p.M371V	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr15	101624375	12A2p6	cell line	sgMsh2	101624375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	231	0	0	NA	exonic	Gm5414	synonymous SNV	Gm5414:NM_001003670:exon8:c.A1416G:p.P472P	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
M7	chr15	101936188	12A2p6	cell line	sgMsh2	101936188	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	190	5	1	0.2	exonic	Krt79	nonsynonymous SNV	Krt79:NM_146063:exon4:c.G760A:p.A254T	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999958	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr15	101946932	12A2p6	cell line	sgMsh2	101946932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	285	0	0	NA	exonic	Krt78	nonsynonymous SNV	Krt78:NM_212487:exon9:c.T2443C:p.Y815H	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	2.01E-08	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	102156832	12A2p6	cell line	sgMsh2	102156832	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	181	6	1	0.166666667	exonic	Soat2	stopgain	Soat2:NM_146064:exon6:c.T461A:p.L154X	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9987198	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr15	102186467	12A2p6	cell line	sgMsh2	102186467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	93	13	1	0.076923077	exonic	Csad	nonsynonymous SNV	"Csad:NM_001359127:exon7:c.T574C:p.Y192H,Csad:NM_144942:exon7:c.T574C:p.Y192H,Csad:NM_001359126:exon10:c.T574C:p.Y192H,Csad:NM_001359128:exon10:c.T574C:p.Y192H"	15qF2	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8278506	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	102236025	12A2p6	cell line	sgMsh2	102236025	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	11	74	24	0.324324324	exonic	Rarg	synonymous SNV	"Rarg:NM_001042727:exon8:c.G1343A:p.X448X,Rarg:NM_011244:exon10:c.G1376A:p.X459X"	15qF3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	1	1	0.09699364	TCA	synonymous	NA	NA	NA	NA
M7	chr15	102358373	12A2p6	cell line	sgMsh2	102358373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	77	0	0	NA	exonic	Sp7	nonsynonymous SNV	"Sp7:NM_001348205:exon2:c.T997C:p.F333L,Sp7:NM_130458:exon2:c.T1051C:p.F351L"	15qF3	chr15-3279130-102454328	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9539026	AAC	nonsynonymous	CTT	8	CTTCTTCT	NA
M7	chr15	102522909	12A2p6	cell line	sgMsh2	102522909	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	36	21	7	0.333333333	exonic	Tarbp2	nonsynonymous SNV	"Tarbp2:NM_001253795:exon6:c.T526A:p.L176M,Tarbp2:NM_009319:exon8:c.T799A:p.L267M"	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr15	102707415	12A2p6	cell line	sgMsh2	102707415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	56	132	28	0.212121212	exonic	Calcoco1	nonsynonymous SNV	Calcoco1:NM_026192:exon15:c.A2030G:p.D677G	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATC	nonsynonymous	CCAT	8	CCATCCAT	NA
M7	chr15	102936948	12A2p6	cell line	sgMsh2	102936948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	68	0	0	NA	exonic	Hoxc12	synonymous SNV	Hoxc12:NM_010463:exon1:c.A96G:p.S32S	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M7	chr15	102955062	12A2p6	cell line	sgMsh2	102955062	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	21	0	0	NA	exonic	Hoxc11	synonymous SNV	Hoxc11:NM_001024842:exon1:c.G537A:p.G179G	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGG	synonymous	G	5	GGGGG	NA
M7	chr15	102956556	12A2p6	cell line	sgMsh2	102956556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	30	0	0	NA	exonic	Hoxc11	nonsynonymous SNV	Hoxc11:NM_001024842:exon2:c.T770C:p.I257T	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr15	102990879	12A2p6	cell line	sgMsh2	102990879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	60	0	0	NA	exonic	Hoxc8	stopgain	Hoxc8:NM_010466:exon1:c.A100T:p.R34X	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr15	103241519	12A2p6	cell line	sgMsh2	103241519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	232	18	4	0.222222222	exonic	Hnrnpa1	nonsynonymous SNV	"Hnrnpa1:NM_001039129:exon3:c.A206G:p.D69G,Hnrnpa1:NM_010447:exon3:c.A206G:p.D69G"	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr15	103562974	12A2p6	cell line	sgMsh2	103562974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	159	0	0	NA	exonic	Glycam1	synonymous SNV	Glycam1:NM_008134:exon4:c.A366G:p.T122T	15qF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M7	chr16	4137374	12A2p6	cell line	sgMsh2	4137374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	178	51	12	0.235294118	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon5:c.A1319T:p.N440I	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	4288835	12A2p6	cell line	sgMsh2	4288835	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.252	138	4	1	0.25	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A3125C:p.E1042A,Adcy9:NM_001291910:exon12:c.A2414C:p.E805A"	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	35	1	1	1	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M7	chr16	4611384	12A2p6	cell line	sgMsh2	4611384	-	C	Insertion	Strelka2;Vardict	2	0.2174	69	36	0	0	exonic	Glis2	frameshift insertion	Glis2:NM_031184:exon4:c.451dupC:p.K154Qfs*22	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TTC	frameshift	TCCT	16	CTTCCTCCTTCCTTCC	1
M7	chr16	4613795	12A2p6	cell line	sgMsh2	4613795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	46	21	9	0.428571429	exonic	Glis2	synonymous SNV	Glis2:NM_031184:exon7:c.T1185C:p.G395G	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	synonymous	GGTGGG	21	GGTGGAGGTGGGGGTGGGGGT	NA
M7	chr16	4616855	12A2p6	cell line	sgMsh2	4616855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	245	17	8	0.470588235	exonic	Pam16	synonymous SNV	Pam16:NM_025571:exon4:c.G249A:p.V83V	16qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TCA	synonymous	NA	NA	NA	NA
M7	chr16	4648302	12A2p6	cell line	sgMsh2	4648302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	52	17	4	0.235294118	exonic	Vasn	nonsynonymous SNV	Vasn:NM_139307:exon2:c.T112C:p.F38L	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	4648458	12A2p6	cell line	sgMsh2	4648458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	14	1	0.071428571	exonic	Vasn	nonsynonymous SNV	Vasn:NM_139307:exon2:c.A268G:p.T90A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	4765812	12A2p6	cell line	sgMsh2	4765812	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	154	121	22	0.181818182	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon5:c.T743A:p.L248Q,Hmox2:NM_001357050:exon5:c.T827A:p.L276Q,Hmox2:NM_001378999:exon5:c.T800A:p.L267Q,Hmox2:NM_010443:exon5:c.T743A:p.L248Q"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999678	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	5106071	12A2p6	cell line	sgMsh2	5106071	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	126	77	3	0.038961039	exonic	Ppl	nonsynonymous SNV	Ppl:NM_008909:exon5:c.C538T:p.P180S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.378342139	2	0.7812425	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr16	5233830	12A2p6	cell line	sgMsh2	5233830	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	42	16	3	0.1875	exonic	Alg1	nonsynonymous SNV	Alg1:NM_145362:exon1:c.T181G:p.F61V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	5236390	12A2p6	cell line	sgMsh2	5236390	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	27	5	0.185185185	exonic	Alg1	nonsynonymous SNV	Alg1:NM_145362:exon4:c.T461G:p.I154S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9926395	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr16	7224509	12A2p6	cell line	sgMsh2	7224509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	70	2	0	0	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.A298G:p.S100G,Rbfox1:NM_001359728:exon2:c.A298G:p.S100G,Rbfox1:NM_001359729:exon2:c.A298G:p.S100G,Rbfox1:NM_183188:exon2:c.A286G:p.S96G,Rbfox1:NM_001359723:exon5:c.A226G:p.S76G,Rbfox1:NM_001359724:exon5:c.A226G:p.S76G,Rbfox1:NM_001359730:exon5:c.A226G:p.S76G,Rbfox1:NM_001359725:exon6:c.A226G:p.S76G,Rbfox1:NM_021477:exon6:c.A226G:p.S76G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.5606757	2	0.9711249	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	8409720	12A2p6	cell line	sgMsh2	8409720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	60	0	0	NA	exonic	Tmem114	nonsynonymous SNV	Tmem114:NM_029070:exon4:c.T478G:p.S160A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.6817854	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	8708904	12A2p6	cell line	sgMsh2	8708904	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	85	165	48	0.290909091	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon5:c.T569G:p.V190G	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9983886	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	10480230	12A2p6	cell line	sgMsh2	10480230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	75	0	0	NA	exonic	Ciita	synonymous SNV	"Ciita:NM_001243760:exon1:c.C87T:p.G29G,Ciita:NM_001302618:exon1:c.C87T:p.G29G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9919384	GCC	synonymous	NA	NA	NA	NA
M7	chr16	10508578	12A2p6	cell line	sgMsh2	10508578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	110	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon8:c.A860G:p.Q287R,Ciita:NM_001243761:exon8:c.A623G:p.Q208R,Ciita:NM_001302618:exon8:c.A863G:p.Q288R,Ciita:NM_007575:exon8:c.A632G:p.Q211R,Ciita:NM_001302619:exon9:c.A560G:p.Q187R"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	11147315	12A2p6	cell line	sgMsh2	11147315	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	94	90	16	0.177777778	exonic	Zc3h7a	synonymous SNV	Zc3h7a:NM_145931:exon16:c.C1953A:p.A651A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9659061	GGG	synonymous	NA	NA	NA	NA
M7	chr16	11228191	12A2p6	cell line	sgMsh2	11228191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	67	311	65	0.209003215	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon11:c.T1346C:p.M449T,Gspt1:NM_146066:exon11:c.T1349C:p.M450T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	2	1	1	0.9955388	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	11253685	12A2p6	cell line	sgMsh2	11253685	C	T	SNV	Mutect2;MuSe;Vardict	3	0.227	21	167	32	0.191616766	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon1:c.G313A:p.G105R,Gspt1:NM_146066:exon1:c.G313A:p.G105R"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9425816	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr16	11313991	12A2p6	cell line	sgMsh2	11313991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	296	0	0	NA	exonic	Tnfrsf17	synonymous SNV	Tnfrsf17:NM_011608:exon1:c.T39C:p.S13S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	1.87E-08	GTC	synonymous	NA	NA	NA	NA
M7	chr16	13401031	12A2p6	cell line	sgMsh2	13401031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	240	24	4	0.166666667	exonic	Mrtfb	nonsynonymous SNV	"Mrtfb:NM_153588:exon10:c.A1540C:p.T514P,Mrtfb:NM_001122667:exon12:c.A1573C:p.T525P"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	13791967	12A2p6	cell line	sgMsh2	13791967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	127	137	28	0.204379562	exonic	Rrn3	nonsynonymous SNV	Rrn3:NM_001039521:exon8:c.T638G:p.V213G	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7052445	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	93	168	28	0.166666667	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	120	154	35	0.227272727	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	14152629	12A2p6	cell line	sgMsh2	14152629	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	143	77	16	0.207792208	exonic	Marf1	synonymous SNV	Marf1:NM_001081154:exon3:c.A225T:p.P75P	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	CTG	synonymous	NA	NA	NA	NA
M7	chr16	15862510	12A2p6	cell line	sgMsh2	15862510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	48	17	5	0.294117647	exonic	Mzt2	synonymous SNV	"Mzt2:NM_029354:exon2:c.T210C:p.A70A,Mzt2:NM_001359003:exon3:c.T210C:p.A70A"	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.665517497	2	0.60291	GAG	synonymous	NA	NA	NA	NA
M7	chr16	16303674	12A2p6	cell line	sgMsh2	16303674	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	85	61	17	0.278688525	exonic	Yars2	nonsynonymous SNV	Yars2:NM_198246:exon1:c.T691A:p.Y231N	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9983886	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr16	17148360	12A2p6	cell line	sgMsh2	17148360	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	71	15	4	0.266666667	exonic	Ydjc	synonymous SNV	"Ydjc:NM_001378794:exon5:c.G810A:p.E270E,Ydjc:NM_026940:exon5:c.G807A:p.E269E"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	0.7128324	AGC	synonymous	NA	NA	NA	NA
M7	chr16	17297275	12A2p6	cell line	sgMsh2	17297275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	112	57	6	0.105263158	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon38:c.A4249G:p.T1417A,Pi4ka:NM_001373955:exon38:c.A4432G:p.T1478A"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996512	GTT	nonsynonymous	GGTT	8	GGTTGGTT	NA
M7	chr16	17342352	12A2p6	cell line	sgMsh2	17342352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	94	6	3	0.5	exonic	Serpind1	nonsynonymous SNV	"Serpind1:NM_001331047:exon4:c.T1112C:p.V371A,Serpind1:NM_008223:exon4:c.T1112C:p.V371A"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr16	17640995	12A2p6	cell line	sgMsh2	17640995	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	75	47	17	0.361702128	exonic	Smpd4	synonymous SNV	"Smpd4:NM_001164610:exon15:c.T1494C:p.H498H,Smpd4:NM_001164611:exon15:c.T1491C:p.H497H,Smpd4:NM_001164609:exon16:c.T1533C:p.H511H,Smpd4:NM_029945:exon16:c.T1581C:p.H527H"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	ATG	synonymous	NA	NA	NA	NA
M7	chr16	17849750	12A2p6	cell line	sgMsh2	17849750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	94	102	24	0.235294118	exonic	Dgcr2	nonsynonymous SNV	"Dgcr2:NM_001109750:exon7:c.T835C:p.F279L,Dgcr2:NM_010048:exon7:c.T844C:p.F282L"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	17898798	12A2p6	cell line	sgMsh2	17898798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	105	0	0	NA	exonic	Tssk2	nonsynonymous SNV	Tssk2:NM_009436:exon1:c.T64C:p.S22P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5724799	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	76	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9482838	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	19407099	12A2p6	cell line	sgMsh2	19407099	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	151	0	0	NA	exonic	Olfr165	frameshift deletion	Olfr165:NM_146466:exon1:c.919delA:p.R307Gfs*7	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	ATCC	8	ATCCATCC	-1
M7	chr16	19407757	12A2p6	cell line	sgMsh2	19407757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	250	0	0	NA	exonic	Olfr165	synonymous SNV	Olfr165:NM_146466:exon1:c.T261C:p.L87L	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	AAA	synonymous	NA	NA	NA	NA
M7	chr16	19487703	12A2p6	cell line	sgMsh2	19487703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	245	0	0	NA	exonic	Olfr166	synonymous SNV	Olfr166:NM_147068:exon1:c.T864C:p.I288I	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8976502	TTT	synonymous	NA	NA	NA	NA
M7	chr16	19530213	12A2p6	cell line	sgMsh2	19530213	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	320	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.G706A:p.A236T	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9997713	GCC	nonsynonymous	CTT	9	CTTCTTCTT	NA
M7	chr16	19530407	12A2p6	cell line	sgMsh2	19530407	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	444	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.G512T:p.R171M	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	4.27E-08	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr16	19947087	12A2p6	cell line	sgMsh2	19947087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	119	0	0	NA	exonic	Klhl6	stopgain	Klhl6:NM_183390:exon7:c.T1764A:p.C588X	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	19957248	12A2p6	cell line	sgMsh2	19957248	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	101	0	0	NA	exonic	Klhl6	nonsynonymous SNV	Klhl6:NM_183390:exon3:c.T559G:p.L187V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr16	20398878	12A2p6	cell line	sgMsh2	20398878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	207	148	33	0.222972973	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon8:c.T1082C:p.V361A	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999984	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	20422350	12A2p6	cell line	sgMsh2	20422350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	58	163	28	0.171779141	exonic	Abcc5	synonymous SNV	"Abcc5:NM_013790:exon2:c.G84A:p.G28G,Abcc5:NM_176839:exon2:c.G84A:p.G28G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9925886	GCC	synonymous	NA	NA	NA	NA
M7	chr16	20679994	12A2p6	cell line	sgMsh2	20679994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	73	655	142	0.216793893	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon9:c.T1479C:p.S493S,Eif4g1:NM_145941:exon10:c.T1500C:p.S500S"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.660959158	2	0.8278475	CTC	synonymous	NA	NA	NA	NA
M7	chr16	20738726	12A2p6	cell line	sgMsh2	20738726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	52	3	1	0.333333333	exonic	Chrd	synonymous SNV	"Chrd:NM_001278041:exon16:c.T2160C:p.P720P,Chrd:NM_001354996:exon16:c.T2094C:p.P698P,Chrd:NM_009893:exon16:c.T2094C:p.P698P,Chrd:NM_001354995:exon17:c.T657C:p.P219P"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.547000683	2	0.9173232	CTA	synonymous	NA	NA	NA	NA
M7	chr16	21217233	12A2p6	cell line	sgMsh2	21217233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	39	2	1	0.5	exonic	Ephb3	synonymous SNV	Ephb3:NM_010143:exon4:c.A870G:p.E290E	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9785304	AAG	synonymous	NA	NA	NA	NA
M7	chr16	21908697	12A2p6	cell line	sgMsh2	21908697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	214	8	3	0.375	exonic	Map3k13	synonymous SNV	Map3k13:NM_172821:exon7:c.T1308C:p.F436F	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999989	TTG	synonymous	NA	NA	NA	NA
M7	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	4	0	0	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	23118058	12A2p6	cell line	sgMsh2	23118058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	137	90	25	0.277777778	exonic	Rfc4	nonsynonymous SNV	Rfc4:NM_145480:exon5:c.A296G:p.E99G	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	23977567	12A2p6	cell line	sgMsh2	23977567	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	148	13	6	0.461538462	exonic	Bcl6	nonsynonymous SNV	"Bcl6:NM_001348026:exon3:c.G109A:p.V37M,Bcl6:NM_009744:exon3:c.G109A:p.V37M"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr16	27444556	12A2p6	cell line	sgMsh2	27444556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	187	238	44	0.18487395	exonic	Ccdc50	synonymous SNV	"Ccdc50:NM_001025615:exon9:c.T759C:p.P253P,Ccdc50:NM_026202:exon10:c.T804C:p.P268P,Ccdc50:NM_001289436:exon11:c.T354C:p.P118P"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.999995	CTA	synonymous	ACC	12	ACCACCACCACC	NA
M7	chr16	28752846	12A2p6	cell line	sgMsh2	28752846	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	68	0	0	NA	exonic	Fgf12	frameshift deletion	Fgf12:NM_010199:exon2:c.1delA:p.M1Wfs*7	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr16	28828824	12A2p6	cell line	sgMsh2	28828824	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	113	9	5	0.555555556	exonic	Mb21d2	nonsynonymous SNV	Mb21d2:NM_177718:exon2:c.C397T:p.P133S	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr16	30260866	12A2p6	cell line	sgMsh2	30260866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	exonic	Cpn2	nonsynonymous SNV	Cpn2:NM_027904:exon2:c.T16C:p.W6R	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	30272931	12A2p6	cell line	sgMsh2	30272931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	187	0	0	NA	exonic	Lrrc15	nonsynonymous SNV	Lrrc15:NM_028973:exon2:c.T1589C:p.M530T	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.999995	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	31303521	12A2p6	cell line	sgMsh2	31303521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	119	0	0	NA	exonic	Apod	nonsynonymous SNV	"Apod:NM_001301354:exon3:c.G134A:p.R45K,Apod:NM_001301353:exon4:c.G134A:p.R45K,Apod:NM_007470:exon4:c.G134A:p.R45K"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr16	32084622	12A2p6	cell line	sgMsh2	32084622	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	121	98	27	0.275510204	exonic	Pigx	nonsynonymous SNV	"Pigx:NM_001111025:exon6:c.T620C:p.L207P,Pigx:NM_024464:exon6:c.T626C:p.L209P"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	32291951	12A2p6	cell line	sgMsh2	32291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	176	55	11	0.2	exonic	Rnf168	synonymous SNV	Rnf168:NM_027355:exon5:c.T735C:p.A245A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.7859538	CTG	synonymous	NA	NA	NA	NA
M7	chr16	32751782	12A2p6	cell line	sgMsh2	32751782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	331	0	0	NA	exonic	Muc4	synonymous SNV	Muc4:NM_080457:exon2:c.A1659G:p.T553T	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.997779	CAG	synonymous	NA	NA	NA	NA
M7	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	134	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9996832	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr16	32776913	12A2p6	cell line	sgMsh2	32776913	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	87	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon22:c.A9626T:p.N3209I	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.990261	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	32794384	12A2p6	cell line	sgMsh2	32794384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	402	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.A622G:p.T208A,Muc20:NM_146071:exon2:c.A622G:p.T208A"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr16	32847841	12A2p6	cell line	sgMsh2	32847841	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	26	16	3	0.1875	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon4:c.A455T:p.K152I,Rubcn:NM_001374776:exon4:c.A272T:p.K91I,Rubcn:NM_172615:exon4:c.A455T:p.K152I"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9561406	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	32959460	12A2p6	cell line	sgMsh2	32959460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	99	35	5	0.142857143	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon5:c.T706C:p.C236R,Lrch3:NM_001310672:exon5:c.T706C:p.C236R,Lrch3:NM_001310673:exon5:c.T706C:p.C236R,Lrch3:NM_001310674:exon5:c.T706C:p.C236R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9926395	TTG	nonsynonymous	TGTT	8	TGTTTGTT	NA
M7	chr16	33725486	12A2p6	cell line	sgMsh2	33725486	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	65	38	12	0.315789474	exonic	Heg1	synonymous SNV	Heg1:NM_175256:exon3:c.T606G:p.A202A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.7247479	CTC	synonymous	NA	NA	NA	NA
M7	chr16	33975874	12A2p6	cell line	sgMsh2	33975874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	117	1	1	1	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon60:c.T8591C:p.L2864P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	33977543	12A2p6	cell line	sgMsh2	33977543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	146	1	0	0	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon59:c.G8368A:p.A2790T	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr16	34723396	12A2p6	cell line	sgMsh2	34723396	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	113	24	8	0.333333333	exonic	Ccdc14	nonsynonymous SNV	Ccdc14:NM_172824:exon13:c.A2267G:p.N756S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9996509	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	34723880	12A2p6	cell line	sgMsh2	34723880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	62	12	0	0	exonic	Ccdc14	synonymous SNV	Ccdc14:NM_172824:exon13:c.T2751C:p.D917D	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9940844	ATG	synonymous	NA	NA	NA	NA
M7	chr16	35814030	12A2p6	cell line	sgMsh2	35814030	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	113	19	0	0	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon4:c.A545G:p.N182S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	96	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	35863528	12A2p6	cell line	sgMsh2	35863528	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	93	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon4:c.T427A:p.C143S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	36615278	12A2p6	cell line	sgMsh2	36615278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	94	0	0	NA	exonic	Cd86	nonsynonymous SNV	Cd86:NM_019388:exon5:c.T776C:p.L259P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	37139968	12A2p6	cell line	sgMsh2	37139968	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.194	132	0	0	NA	exonic	Stxbp5l	frameshift insertion	"Stxbp5l:NM_001114611:exon21:c.2288dupA:p.N763Kfs*1,Stxbp5l:NM_001114612:exon22:c.2459dupA:p.N820Kfs*1,Stxbp5l:NM_001114613:exon22:c.2360dupA:p.N787Kfs*1,Stxbp5l:NM_172440:exon23:c.2531dupA:p.N844Kfs*1"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.884317771	NA	NA	CAT	frameshift	T	5	TTTTT	1
M7	chr16	37522850	12A2p6	cell line	sgMsh2	37522850	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	210	73	2	0.02739726	exonic	Gtf2e1	nonsynonymous SNV	"Gtf2e1:NM_001355727:exon3:c.T551C:p.I184T,Gtf2e1:NM_028812:exon3:c.T551C:p.I184T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.14130851	3	1	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	37818952	12A2p6	cell line	sgMsh2	37818952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	125	0	0	NA	exonic	Fstl1	nonsynonymous SNV	Fstl1:NM_008047:exon4:c.T211C:p.Y71H	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.8595898	CTA	nonsynonymous	ACCT	8	ACCTACCT	NA
M7	chr16	38332185	12A2p6	cell line	sgMsh2	38332185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	173	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T662C:p.L221P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9959435	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	38332237	12A2p6	cell line	sgMsh2	38332237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	189	1	1	1	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T610C:p.Y204H	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9998965	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	43982105	12A2p6	cell line	sgMsh2	43982105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	151	6	1	0.166666667	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon13:c.T1327C:p.F443L,Gramd1c:NM_153528:exon13:c.T1327C:p.F443L,Gramd1c:NM_001359085:exon17:c.T1858C:p.F620L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	AAG	nonsynonymous	T	5	TTTTT	NA
M7	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	185	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999945	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	44429904	12A2p6	cell line	sgMsh2	44429904	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	96	0	0	NA	exonic	Cfap44	nonsynonymous SNV	Cfap44:NM_001033247:exon18:c.T2344G:p.F782V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr16	44488543	12A2p6	cell line	sgMsh2	44488543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	51	0	0	NA	exonic	Boc	nonsynonymous SNV	Boc:NM_172506:exon15:c.C2605T:p.P869S	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8573146	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr16	45183749	12A2p6	cell line	sgMsh2	45183749	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	195	94	21	0.223404255	exonic	Atg3	nonsynonymous SNV	"Atg3:NM_001356366:exon9:c.T473A:p.V158E,Atg3:NM_026402:exon10:c.T734A:p.V245E"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999969	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	45547695	12A2p6	cell line	sgMsh2	45547695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	155	0	0	NA	exonic	Slc9c1	nonsynonymous SNV	Slc9c1:NM_198106:exon6:c.T646A:p.F216I	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr16	45980623	12A2p6	cell line	sgMsh2	45980623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	7	1	0.142857143	exonic	Plcxd2	nonsynonymous SNV	Plcxd2:NM_001134480:exon2:c.A237G:p.I79M	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	237	100	22	0.22	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	49001667	12A2p6	cell line	sgMsh2	49001667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	138	151	44	0.291390728	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon6:c.A657G:p.L219L	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9871698	TAA	synonymous	NA	NA	NA	NA
M7	chr16	56111620	12A2p6	cell line	sgMsh2	56111620	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	241	51	3	0.058823529	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_001003973:exon4:c.T200C:p.M67T,Senp7:NM_001003972:exon5:c.T281C:p.M94T,Senp7:NM_001304503:exon5:c.T281C:p.M94T,Senp7:NM_025483:exon5:c.T281C:p.M94T"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.227916951	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	97	234	42	0.179487179	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9991836	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr16	56732892	12A2p6	cell line	sgMsh2	56732892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	133	0	0	NA	exonic	Adgrg7	nonsynonymous SNV	Adgrg7:NM_172825:exon14:c.A1841T:p.D614V	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr16	57214237	12A2p6	cell line	sgMsh2	57214237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	148	72	29	0.402777778	exonic	Tbc1d23	synonymous SNV	"Tbc1d23:NM_001358433:exon3:c.T198C:p.S66S,Tbc1d23:NM_026254:exon3:c.T198C:p.S66S"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	AAC	synonymous	NA	NA	NA	NA
M7	chr16	57570538	12A2p6	cell line	sgMsh2	57570538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	116	150	21	0.14	exonic	Filip1l	synonymous SNV	"Filip1l:NM_001177871:exon2:c.G774T:p.V258V,Filip1l:NM_001040397:exon5:c.G1488T:p.V496V"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5384789	TGA	synonymous	NA	NA	NA	NA
M7	chr16	59216355	12A2p6	cell line	sgMsh2	59216355	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	268	0	0	NA	exonic	Olfr199	frameshift deletion	Olfr199:NM_207550:exon1:c.257delT:p.L86Yfs*6	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr16	59269251	12A2p6	cell line	sgMsh2	59269251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	347	0	0	NA	exonic	Olfr201	nonsynonymous SNV	Olfr201:NM_146994:exon1:c.A415G:p.R139G	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	1.57E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr16	59314714	12A2p6	cell line	sgMsh2	59314714	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	262	0	0	NA	exonic	Olfr204	nonsynonymous SNV	Olfr204:NM_146992:exon1:c.G692T:p.R231M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr16	59362061	12A2p6	cell line	sgMsh2	59362061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	554	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.T156C:p.P52P,Olfr209:NM_207551:exon1:c.T156C:p.P52P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.455833902	2	1	GAG	synonymous	NA	NA	NA	NA
M7	chr16	59415267	12A2p6	cell line	sgMsh2	59415267	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	181	0	0	NA	exonic	Gabrr3	nonsynonymous SNV	Gabrr3:NM_001081190:exon2:c.G131A:p.R44K	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.6908418	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr16	59461624	12A2p6	cell line	sgMsh2	59461624	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	0	0	NA	exonic	Gabrr3	synonymous SNV	Gabrr3:NM_001081190:exon9:c.A1341G:p.V447V	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998593	TAT	synonymous	NA	NA	NA	NA
M7	chr16	59530197	12A2p6	cell line	sgMsh2	59530197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	7	1	0.142857143	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon14:c.C7821T:p.G2607G	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	CGC	synonymous	NA	NA	NA	NA
M7	chr16	59775752	12A2p6	cell line	sgMsh2	59775752	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	73	0	0	NA	exonic	Epha6	nonsynonymous SNV	Epha6:NM_007938:exon14:c.A2575G:p.K859E	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.387458817	2	0.8390832	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	62822229	12A2p6	cell line	sgMsh2	62822229	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	139	0	0	NA	exonic	Stx19	nonsynonymous SNV	Stx19:NM_026588:exon2:c.C407A:p.A136D	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999246	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr16	63773391	12A2p6	cell line	sgMsh2	63773391	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.209	81	0	0	NA	exonic	Epha3	frameshift insertion	"Epha3:NM_001362452:exon3:c.332dupT:p.L111Ffs*10,Epha3:NM_010140:exon3:c.332dupT:p.L111Ffs*10"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.952692856	NA	NA	CCA	frameshift	NA	NA	NA	1
M7	chr16	64478496	12A2p6	cell line	sgMsh2	64478496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	168	0	0	NA	exonic	Csnka2ip	nonsynonymous SNV	"Csnka2ip:NM_001368721:exon3:c.A1504G:p.K502E,Csnka2ip:NM_173861:exon3:c.A1504G:p.K502E"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9999226	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	64926197	12A2p6	cell line	sgMsh2	64926197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	162	0	0	NA	exonic	Htr1f	nonsynonymous SNV	Htr1f:NM_008310:exon3:c.C731T:p.S244F	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999795	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr16	66882797	12A2p6	cell line	sgMsh2	66882797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	138	0	0	NA	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon2:c.T147C:p.N49N,Cadm2:NM_001347247:exon2:c.T147C:p.N49N,Cadm2:NM_178721:exon3:c.T174C:p.N58N"	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9995434	CAT	synonymous	NA	NA	NA	NA
M7	chr16	69857128	12A2p6	cell line	sgMsh2	69857128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	75	0	0	NA	exonic	Speer2	synonymous SNV	Speer2:NM_173069:exon6:c.T732C:p.H244H	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	AAT	synonymous	NA	NA	NA	NA
M7	chr16	70483864	12A2p6	cell line	sgMsh2	70483864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	240	15	4	0.266666667	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon9:c.A1152C:p.Q384H	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	72972373	12A2p6	cell line	sgMsh2	72972373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	128	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon11:c.T1679C:p.F560S	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.7386858	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr16	73897177	12A2p6	cell line	sgMsh2	73897177	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	33	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_001358492:exon26:c.G4043A:p.S1348N,Robo2:NM_001358494:exon26:c.G3974A:p.S1325N,Robo2:NM_001358491:exon27:c.G4316A:p.S1439N,Robo2:NM_175549:exon27:c.G4361A:p.S1454N,Robo2:NM_001358493:exon28:c.G4442A:p.S1481N"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.688309193	1	0.60764	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr16	77114936	12A2p6	cell line	sgMsh2	77114936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	147	108	20	0.185185185	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2852C:p.V951A	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999521	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	81490349	12A2p6	cell line	sgMsh2	81490349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	115	0	0	NA	exonic	Ncam2	nonsynonymous SNV	"Ncam2:NM_001113208:exon9:c.A1150G:p.S384G,Ncam2:NM_010954:exon9:c.A1150G:p.S384G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7194634	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	81595208	12A2p6	cell line	sgMsh2	81595208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	166	0	0	NA	exonic	Ncam2	nonsynonymous SNV	Ncam2:NM_010954:exon16:c.T2079A:p.D693E	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999837	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr16	85899599	12A2p6	cell line	sgMsh2	85899599	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	40	0	0	NA	exonic	Adamts5	synonymous SNV	Adamts5:NM_011782:exon1:c.G669T:p.S223S	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.715659227	1	0.6254852	CCG	synonymous	NA	NA	NA	NA
M7	chr16	85899765	12A2p6	cell line	sgMsh2	85899765	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	70	0	0	NA	exonic	Adamts5	nonsynonymous SNV	Adamts5:NM_011782:exon1:c.A503C:p.K168T	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9962344	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr16	87719648	12A2p6	cell line	sgMsh2	87719648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	88	35	5	0.142857143	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.A1076G:p.D359G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	87912833	12A2p6	cell line	sgMsh2	87912833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	70	0	0	NA	exonic	Grik1	nonsynonymous SNV	Grik1:NM_001346964:exon16:c.A2599G:p.T867A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9841259	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M7	chr16	88884969	12A2p6	cell line	sgMsh2	88884969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	54	0	0	NA	exonic	Krtap19-4	nonsynonymous SNV	Krtap19-4:NM_130873:exon1:c.G98A:p.R33H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9907182	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr16	88896399	12A2p6	cell line	sgMsh2	88896399	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	31	0	0	NA	exonic	Krtap19-5	synonymous SNV	Krtap19-5:NM_010676:exon1:c.C24T:p.Y8Y	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.966611	CGT	synonymous	NA	NA	NA	NA
M7	chr16	89833118	12A2p6	cell line	sgMsh2	89833118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	54	5	1	0.2	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon15:c.T2779C:p.Y927H,Tiam1:NM_009384:exon15:c.T2779C:p.Y927H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.6546427	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr16	90475960	12A2p6	cell line	sgMsh2	90475960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	39	4	4	1	exonic	Hunk	nonsynonymous SNV	Hunk:NM_015755:exon7:c.A1151G:p.K384R	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	2	1	1	0.9785304	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr16	90752060	12A2p6	cell line	sgMsh2	90752060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	27	10	3	0.3	exonic	Urb1	synonymous SNV	Urb1:NM_029497:exon39:c.T6759C:p.L2253L	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	CAA	synonymous	NA	NA	NA	NA
M7	chr16	90753500	12A2p6	cell line	sgMsh2	90753500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	76	7	2	0.285714286	exonic	Urb1	nonsynonymous SNV	Urb1:NM_029497:exon38:c.T6463C:p.Y2155H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.697425871	2	0.70713	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr16	90961452	12A2p6	cell line	sgMsh2	90961452	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	76	23	4	0.173913043	exonic	Synj1	nonsynonymous SNV	"Synj1:NM_001045515:exon19:c.A2383G:p.T795A,Synj1:NM_001164483:exon19:c.A2503G:p.T835A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	200	13	6	0.461538462	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999976	CGC	synonymous	NA	NA	NA	NA
M7	chr16	91501628	12A2p6	cell line	sgMsh2	91501628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	84	54	9	0.166666667	exonic	Ifnar1	nonsynonymous SNV	Ifnar1:NM_010508:exon9:c.A1132G:p.M378V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.5813975	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	91686273	12A2p6	cell line	sgMsh2	91686273	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	52	27	5	0.185185185	exonic	Donson	nonsynonymous SNV	Donson:NM_021720:exon3:c.C485T:p.S162F	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.8815396	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr16	94432031	12A2p6	cell line	sgMsh2	94432031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	110	152	40	0.263157895	exonic	Ttc3	nonsynonymous SNV	Ttc3:NM_009441:exon28:c.A2984C:p.D995A	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.977858	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr16	94502227	12A2p6	cell line	sgMsh2	94502227	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	75	71	13	0.183098592	exonic	Vps26c	synonymous SNV	Vps26c:NM_007834:exon6:c.T513C:p.A171A	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9820806	AAG	synonymous	NA	NA	NA	NA
M7	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	147	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999521	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr16	96033652	12A2p6	cell line	sgMsh2	96033652	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	232	35	7	0.2	exonic	Brwd1	nonsynonymous SNV	"Brwd1:NM_001103179:exon25:c.C2936A:p.A979D,Brwd1:NM_145125:exon25:c.C2936A:p.A979D"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9999116	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr16	96819972	12A2p6	cell line	sgMsh2	96819972	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	85	0	0	NA	exonic	Dscam	frameshift deletion	Dscam:NM_031174:exon8:c.1535delA:p.N512Tfs*4	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	0.893434449	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr16	97803739	12A2p6	cell line	sgMsh2	97803739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	143	9	0	0	exonic	Prdm15	nonsynonymous SNV	"Prdm15:NM_001359078:exon18:c.A881G:p.N294S,Prdm15:NM_001359077:exon19:c.A2390G:p.N797S,Prdm15:NM_144789:exon19:c.A2468G:p.N823S"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	3168037	12A2p6	cell line	sgMsh2	3168037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	75	60	16	0.266666667	exonic	Scaf8	synonymous SNV	Scaf8:NM_134123:exon7:c.T681C:p.A227A	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9971617	CTG	synonymous	NA	NA	NA	NA
M7	chr17	3453370	12A2p6	cell line	sgMsh2	3453370	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	244	51	8	0.156862745	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon13:c.T2821G:p.F941V,Tiam2:NM_011878:exon13:c.T2821G:p.F941V"	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.984601229	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr17	3557673	12A2p6	cell line	sgMsh2	3557673	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	54	10	1	0.1	exonic	Tfb1m	frameshift deletion	Tfb1m:NM_146074:exon1:c.41delC:p.P14Rfs*16	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M7	chr17	5291024	12A2p6	cell line	sgMsh2	5291024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	37	5	0.135135135	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon8:c.A2446G:p.M816V	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.998853	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	6022256	12A2p6	cell line	sgMsh2	6022256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	166	75	18	0.24	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001290698:exon10:c.A1343G:p.K448R,Synj2:NM_001113351:exon15:c.A2036G:p.K679R,Synj2:NM_001357665:exon15:c.A1166G:p.K389R,Synj2:NM_001357667:exon15:c.A2036G:p.K679R,Synj2:NM_011523:exon15:c.A2036G:p.K679R,Synj2:NM_001113352:exon16:c.A2291G:p.K764R,Synj2:NM_001113353:exon16:c.A2291G:p.K764R"	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999837	AAA	nonsynonymous	AAGT	8	AAGTAAGT	NA
M7	chr17	7255928	12A2p6	cell line	sgMsh2	7255928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	128	82	22	0.268292683	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon8:c.T702C:p.R234R	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.765800956	1	0.5009854	GTG	synonymous	NA	NA	NA	NA
M7	chr17	7271596	12A2p6	cell line	sgMsh2	7271596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	216	73	17	0.232876712	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon11:c.T912C:p.A304A	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.856967736	1	0.9912067	CTG	synonymous	NA	NA	NA	NA
M7	chr17	7277546	12A2p6	cell line	sgMsh2	7277546	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	107	109	23	0.211009174	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon12:c.T1056A:p.F352L	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995369	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	8169062	12A2p6	cell line	sgMsh2	8169062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	96	62	31	0.5	exonic	Cep43	synonymous SNV	"Cep43:NM_001197046:exon3:c.T184C:p.L62L,Cep43:NM_201230:exon3:c.T184C:p.L62L"	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.999136	CTT	synonymous	A	5	AAAAA	NA
M7	chr17	9668705	12A2p6	cell line	sgMsh2	9668705	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	202	0	0	NA	exonic	Pabpc6	nonsynonymous SNV	Pabpc6:NM_001163836:exon1:c.C916A:p.L306I	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.1868919	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr17	12210663	12A2p6	cell line	sgMsh2	12210663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	124	87	19	0.218390805	exonic	Agpat4	nonsynonymous SNV	Agpat4:NM_026644:exon5:c.C535T:p.R179W	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998234	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr17	12892818	12A2p6	cell line	sgMsh2	12892818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	91	0	0	NA	exonic	Pnldc1	stopgain	Pnldc1:NM_001034866:exon13:c.T1001A:p.L334X	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.998853	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr17	13225746	12A2p6	cell line	sgMsh2	13225746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	969	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T209C:p.M70T	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.387458817	2	0.9999929	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr17	13226452	12A2p6	cell line	sgMsh2	13226452	T	C	SNV	Mutect2;Vardict	2	0.013	1214	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.T915C:p.H305H	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.059258407	3	1	ATA	synonymous	NA	NA	NA	NA
M7	chr17	13846634	12A2p6	cell line	sgMsh2	13846634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	81	106	32	0.301886792	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon15:c.A2032G:p.I678V	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9979789	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	13888945	12A2p6	cell line	sgMsh2	13888945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	177	164	36	0.219512195	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon29:c.A4774G:p.M1592V	17qA1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999913	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	14368972	12A2p6	cell line	sgMsh2	14368972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	82	0	0	NA	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon8:c.T702C:p.N234N	17qA2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.916226144	1	0.985621	ATG	synonymous	NA	NA	NA	NA
M7	chr17	14918099	12A2p6	cell line	sgMsh2	14918099	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	131	0	0	NA	exonic	Wdr27	nonsynonymous SNV	Wdr27:NM_175173:exon11:c.C1088A:p.P363H	17qA2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.802267668	1	0.7988302	GGG	nonsynonymous	GCTC	8	GCTCGCTC	NA
M7	chr17	15368710	12A2p6	cell line	sgMsh2	15368710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	69	7	1	0.142857143	exonic	Dll1	nonsynonymous SNV	"Dll1:NM_007865:exon9:c.T1702C:p.C568R,Dll1:NM_001379042:exon10:c.T1702C:p.C568R"	17qA2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9960154	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	17831160	12A2p6	cell line	sgMsh2	17831160	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	11	1	0.090909091	exonic	Spaca6	nonsynonymous SNV	Spaca6:NM_001162909:exon1:c.C157A:p.L53I	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.911667805	1	0.9671474	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr17	17892838	12A2p6	cell line	sgMsh2	17892838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	253	0	0	NA	exonic	Fpr2	nonsynonymous SNV	Fpr2:NM_008039:exon2:c.T95C:p.V32A	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	1	0.9927395	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	18277423	12A2p6	cell line	sgMsh2	18277423	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	94	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon1:c.A86T:p.D29V	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9913173	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	18304157	12A2p6	cell line	sgMsh2	18304157	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.279	292	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon2:c.T412C:p.Y138H	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	1.38E-08	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	246	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.929901161	1	0.9999714	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr17	19773523	12A2p6	cell line	sgMsh2	19773523	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	125	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon1:c.C161A:p.T54N	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998332	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr17	19799267	12A2p6	cell line	sgMsh2	19799267	C	T	SNV	Mutect2;Vardict	2	0.029	366	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon5:c.C1612T:p.P538S	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.132191832	3	1	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr17	19812337	12A2p6	cell line	sgMsh2	19812337	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	273	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.C2372A:p.T791N	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	1	0.9999925	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr17	19812523	12A2p6	cell line	sgMsh2	19812523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A2558G:p.Y853C	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9952797	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	20030249	12A2p6	cell line	sgMsh2	20030249	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	424	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.G1759A:p.G587R	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.989159568	1	1.03E-09	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr17	20208488	12A2p6	cell line	sgMsh2	20208488	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	220	0	0	NA	exonic	Vmn2r105	synonymous SNV	Vmn2r105:NM_001369232:exon6:c.C2319T:p.F773F	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9998682	TGA	synonymous	NA	NA	NA	NA
M7	chr17	20278379	12A2p6	cell line	sgMsh2	20278379	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	116	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon3:c.C1269A:p.P423P,Vmn2r106:NM_001385160:exon3:c.C1269A:p.P423P"	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	GGG	synonymous	NA	NA	NA	NA
M7	chr17	20375135	12A2p6	cell line	sgMsh2	20375135	T	-	Deletion	Mutect2;Vardict	2	0.024	482	0	0	NA	exonic	Vmn2r107	frameshift deletion	Vmn2r107:NM_001104569:exon6:c.1949delT:p.Q651Sfs*35	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.109400137	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr17	20540614	12A2p6	cell line	sgMsh2	20540614	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	191	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.C2480A:p.P827H	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.9344595	1	0.9998401	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr17	20584215	12A2p6	cell line	sgMsh2	20584215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	182	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon2:c.A442G:p.T148A	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.966367873	1	0.9999598	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	20735576	12A2p6	cell line	sgMsh2	20735576	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	184	0	0	NA	exonic	Vmn1r227	nonsynonymous SNV	Vmn1r227:NM_134195:exon1:c.C371A:p.T124N	17qA3.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.164100205	3	1.00E-09	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr17	22548528	12A2p6	cell line	sgMsh2	22548528	T	C	SNV	Mutect2;Vardict	2	0.023	458	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon6:c.A1987G:p.T663A	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.104841798	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	23665443	12A2p6	cell line	sgMsh2	23665443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	37	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon3:c.A338G:p.E113G	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9760128	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	24376386	12A2p6	cell line	sgMsh2	24376386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	77	54	6	0.111111111	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon8:c.T896C:p.L299P,Abca3:NM_013855:exon9:c.T896C:p.L299P"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9974654	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	24437308	12A2p6	cell line	sgMsh2	24437308	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	148	162	39	0.240740741	exonic	Eci1	nonsynonymous SNV	Eci1:NM_010023:exon5:c.A491T:p.N164I	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999547	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	24442481	12A2p6	cell line	sgMsh2	24442481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	127	0	0	NA	exonic	Dnase1l2	nonsynonymous SNV	Dnase1l2:NM_025718:exon3:c.T157C:p.Y53H	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999851	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	24444906	12A2p6	cell line	sgMsh2	24444906	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	36	15	0	0	exonic	E4f1	synonymous SNV	"E4f1:NM_001301784:exon11:c.A1659G:p.R553R,E4f1:NM_001355708:exon11:c.A1179G:p.R393R,E4f1:NM_007893:exon11:c.A1656G:p.R552R"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.533325666	2	0.7869629	CTC	synonymous	NA	NA	NA	NA
M7	chr17	24496437	12A2p6	cell line	sgMsh2	24496437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	63	0	0	NA	exonic	Caskin1	synonymous SNV	"Caskin1:NM_001360469:exon4:c.T256C:p.L86L,Caskin1:NM_027937:exon4:c.T256C:p.L86L"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9944088	GTT	synonymous	NA	NA	NA	NA
M7	chr17	24575538	12A2p6	cell line	sgMsh2	24575538	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	123	30	8	0.266666667	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon15:c.C6198T:p.R2066R	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.984601229	1	0.9996728	GCT	synonymous	NA	NA	NA	NA
M7	chr17	24587208	12A2p6	cell line	sgMsh2	24587208	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	160	23	5	0.217391304	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon31:c.A10056T:p.T3352T	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999771	CAG	synonymous	CCCACA	12	CCCACACCCACA	NA
M7	chr17	24613241	12A2p6	cell line	sgMsh2	24613241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	72	47	13	0.276595745	exonic	Tsc2	nonsynonymous SNV	"Tsc2:NM_001039363:exon20:c.T2170C:p.F724L,Tsc2:NM_001286713:exon20:c.T2170C:p.F724L,Tsc2:NM_001286714:exon20:c.T2170C:p.F724L,Tsc2:NM_001286716:exon20:c.T2170C:p.F724L,Tsc2:NM_001286718:exon20:c.T2170C:p.F724L,Tsc2:NM_001286720:exon20:c.T2170C:p.F724L,Tsc2:NM_011647:exon20:c.T2170C:p.F724L"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9966369	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	24705424	12A2p6	cell line	sgMsh2	24705424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	173	58	15	0.25862069	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon6:c.A437G:p.H146R	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999989	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	24880730	12A2p6	cell line	sgMsh2	24880730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	94	0	0	NA	exonic	Igfals	nonsynonymous SNV	"Igfals:NM_001364895:exon2:c.T794G:p.M265R,Igfals:NM_001364896:exon2:c.T899G:p.M300R,Igfals:NM_008340:exon2:c.T794G:p.M265R"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.847851058	1	0.9376389	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25092449	12A2p6	cell line	sgMsh2	25092449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	75	37	13	0.351351351	exonic	Ift140	nonsynonymous SNV	Ift140:NM_134126:exon26:c.A3617G:p.Y1206C	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9971617	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	25113114	12A2p6	cell line	sgMsh2	25113114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	81	12	6	0.5	exonic	Telo2	nonsynonymous SNV	"Telo2:NM_001163661:exon3:c.T479A:p.V160D,Telo2:NM_027880:exon3:c.T479A:p.V160D"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.884317771	1	0.9686676	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr17	25373836	12A2p6	cell line	sgMsh2	25373836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	65	0	0	NA	exonic	Tpsg1	nonsynonymous SNV	"Tpsg1:NM_001357726:exon3:c.T290C:p.M97T,Tpsg1:NM_012034:exon4:c.T599C:p.M200T"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9950055	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25393902	12A2p6	cell line	sgMsh2	25393902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	74	3	0	0	exonic	Cacna1h	nonsynonymous SNV	"Cacna1h:NM_001163691:exon7:c.A946G:p.T316A,Cacna1h:NM_021415:exon7:c.A946G:p.T316A"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9969966	GTG	nonsynonymous	TGCAC	10	TGCACTGCAC	NA
M7	chr17	25662564	12A2p6	cell line	sgMsh2	25662564	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	93	14	1	0.071428571	exonic	Lmf1	nonsynonymous SNV	Lmf1:NM_029624:exon11:c.A1586G:p.Q529R	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9989759	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25746793	12A2p6	cell line	sgMsh2	25746793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	0	0	NA	exonic	Mslnl	nonsynonymous SNV	Mslnl:NM_177822:exon15:c.T1640C:p.V547A	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9828142	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25777348	12A2p6	cell line	sgMsh2	25777348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	42	42	4	0.095238095	exonic	Ciao3	synonymous SNV	Ciao3:NM_026238:exon4:c.G330A:p.R110R	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9528346	GGC	synonymous	NA	NA	NA	NA
M7	chr17	25831566	12A2p6	cell line	sgMsh2	25831566	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	157	473	101	0.213530655	exonic	Stub1	nonsynonymous SNV	Stub1:NM_019719:exon4:c.A593T:p.Q198L	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999728	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25836055	12A2p6	cell line	sgMsh2	25836055	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	70	2	0	0	exonic	Rhbdl1	nonsynonymous SNV	Rhbdl1:NM_144816:exon3:c.C340T:p.P114S	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9962344	GGC	nonsynonymous	GCAGG	10	GCAGGGCAGG	NA
M7	chr17	25846344	12A2p6	cell line	sgMsh2	25846344	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	83	11	4	0.363636364	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon36:c.A4937G:p.Y1646C	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.948134517	1	0.9935845	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	25883786	12A2p6	cell line	sgMsh2	25883786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	32	6	0.1875	exonic	Rab40c	nonsynonymous SNV	Rab40c:NM_139154:exon7:c.G688A:p.G230S	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9985612	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr17	25960509	12A2p6	cell line	sgMsh2	25960509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.561	64	8	4	0.5	exonic	Capn15	synonymous SNV	"Capn15:NM_015830:exon8:c.G2592A:p.R864R,Capn15:NM_001347334:exon10:c.G2790A:p.R930R"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9947155	CCC	synonymous	NA	NA	NA	NA
M7	chr17	26067991	12A2p6	cell line	sgMsh2	26067991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	90	32	10	0.3125	exonic	Rab11fip3	nonsynonymous SNV	"Rab11fip3:NM_001162868:exon1:c.T1187A:p.V396E,Rab11fip3:NM_001162869:exon1:c.T1187A:p.V396E"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.948134517	1	0.9951906	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr17	28362961	12A2p6	cell line	sgMsh2	28362961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	68	0	0	NA	exonic	Tulp1	nonsynonymous SNV	Tulp1:NM_021478:exon6:c.A518G:p.K173R	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.98004289	1	0.9937152	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	30530221	12A2p6	cell line	sgMsh2	30530221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	198	25	0	0	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon2:c.T118C:p.F40L,Btbd9:NM_172618:exon2:c.T118C:p.F40L"	17qA3.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9997258	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr17	32144796	12A2p6	cell line	sgMsh2	32144796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	89	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon21:c.T3369C:p.N1123N	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.984601229	1	0.9980746	TAT	synonymous	NA	NA	NA	NA
M7	chr17	32158959	12A2p6	cell line	sgMsh2	32158959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	55	0	0	NA	exonic	Notch3	nonsynonymous SNV	Notch3:NM_008716:exon3:c.A224G:p.E75G	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.998276246	1	0.9909784	CTC	nonsynonymous	CACC	10	CACCCACCCA	NA
M7	chr17	32316546	12A2p6	cell line	sgMsh2	32316546	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	124	68	1	0.014705882	exonic	Akap8	nonsynonymous SNV	"Akap8:NM_001357760:exon3:c.A151G:p.S51G,Akap8:NM_019774:exon5:c.A493G:p.S165G"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.214241934	3	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	32392616	12A2p6	cell line	sgMsh2	32392616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	0	0	NA	exonic	Rasal3	stopgain	"Rasal3:NM_178785:exon14:c.C2530T:p.Q844X,Rasal3:NM_001374604:exon15:c.C2464T:p.Q822X,Rasal3:NM_001347343:exon16:c.C2536T:p.Q846X"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.966611	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr17	33432978	12A2p6	cell line	sgMsh2	33432978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	40	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A11T:p.N4I	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9796905	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	33434038	12A2p6	cell line	sgMsh2	33434038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	63	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.A1071G:p.L357L	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9944088	TAC	synonymous	NA	NA	NA	NA
M7	chr17	33538663	12A2p6	cell line	sgMsh2	33538663	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.202	168	19	3	0.157894737	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon9:c.A233C:p.E78A,Adamts10:NM_001329143:exon10:c.A233C:p.E78A,Adamts10:NM_001329151:exon10:c.A13C:p.S5R,Adamts10:NM_001329152:exon10:c.A13C:p.S5R,Adamts10:NM_001329153:exon10:c.A13C:p.S5R,Adamts10:NM_001329154:exon10:c.A13C:p.S5R,Adamts10:NM_001329202:exon11:c.A13C:p.S5R,Adamts10:NM_001329203:exon11:c.A326C:p.E109A,Adamts10:NM_172619:exon11:c.A1430C:p.E477A"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9992557	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	33642056	12A2p6	cell line	sgMsh2	33642056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	219	1	0	0	exonic	Pram1	nonsynonymous SNV	Pram1:NM_001002842:exon3:c.A1523G:p.Q508R	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999992	CAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M7	chr17	33943640	12A2p6	cell line	sgMsh2	33943640	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	89	81	15	0.185185185	exonic	Wdr46	nonsynonymous SNV	Wdr46:NM_020603:exon8:c.T808C:p.C270R	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.847851058	1	0.9341173	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	34059163	12A2p6	cell line	sgMsh2	34059163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	77	0	0	NA	exonic	Col11a2	synonymous SNV	"Col11a2:NM_009926:exon41:c.T2991C:p.D997D,Col11a2:NM_001317722:exon42:c.T3186C:p.D1062D"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.770359295	1	0.6783976	ATG	synonymous	NA	NA	NA	NA
M7	chr17	34114108	12A2p6	cell line	sgMsh2	34114108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	108	197	36	0.182741117	exonic	Brd2	nonsynonymous SNV	"Brd2:NM_001204973:exon9:c.A1396G:p.T466A,Brd2:NM_010238:exon9:c.A1396G:p.T466A"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.683750854	2	0.9141947	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	34685052	12A2p6	cell line	sgMsh2	34685052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	103	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon7:c.T3166C:p.Y1056H	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999419	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	42	3	0	0	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9818293	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	34841189	12A2p6	cell line	sgMsh2	34841189	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	76	114	34	0.298245614	exonic	Skiv2l	synonymous SNV	Skiv2l:NM_021337:exon22:c.T2604C:p.F868F	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.861526075	1	0.9430229	TAA	synonymous	NA	NA	NA	NA
M7	chr17	35032371	12A2p6	cell line	sgMsh2	35032371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	110	9	3	0.333333333	exonic	Msh5	synonymous SNV	"Msh5:NM_013600:exon15:c.T1374C:p.S458S,Msh5:NM_001146215:exon16:c.T1374C:p.S458S"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.925342822	1	0.9955874	CAC	synonymous	NA	NA	NA	NA
M7	chr17	35117732	12A2p6	cell line	sgMsh2	35117732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	125	343	91	0.265306122	exonic	Csnk2b	nonsynonymous SNV	"Csnk2b:NM_001303445:exon6:c.A521G:p.Y174C,Csnk2b:NM_001303446:exon6:c.A584G:p.Y195C,Csnk2b:NM_009975:exon6:c.A521G:p.Y174C"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.866084414	1	0.9769846	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	35159890	12A2p6	cell line	sgMsh2	35159890	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	54	313	69	0.220447284	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon11:c.G1174A:p.E392K,Prrc2a:NM_020027:exon11:c.G1174A:p.E392K"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9907182	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr17	35200554	12A2p6	cell line	sgMsh2	35200554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	56	0	0	NA	exonic	Tnf	nonsynonymous SNV	"Tnf:NM_001278601:exon3:c.A251G:p.Q84R,Tnf:NM_013693:exon4:c.A299G:p.Q100R"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9917055	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	35235699	12A2p6	cell line	sgMsh2	35235699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	95	10	0	0	exonic	Nfkbil1	nonsynonymous SNV	Nfkbil1:NM_010909:exon1:c.A8G:p.N3S	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9990856	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	35265861	12A2p6	cell line	sgMsh2	35265861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	437	170	44	0.258823529	exonic	H2-D1;H2-L	nonsynonymous SNV	"H2-D1:NM_010380:exon4:c.T697A:p.Y233N,H2-L:NM_001267808:exon8:c.T673A:p.Y225N"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	35344798	12A2p6	cell line	sgMsh2	35344798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	356	0	0	NA	exonic	H2-Q2	synonymous SNV	"H2-Q2:NM_001368740:exon4:c.T654C:p.G218G,H2-Q2:NM_010392:exon4:c.T654C:p.G218G"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	1.34E-09	GTG	synonymous	NA	NA	NA	NA
M7	chr17	35344959	12A2p6	cell line	sgMsh2	35344959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	351	0	0	NA	exonic	H2-Q2	nonsynonymous SNV	"H2-Q2:NM_001368740:exon4:c.T815G:p.F272C,H2-Q2:NM_010392:exon4:c.T815G:p.F272C"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	1.45E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	35567593	12A2p6	cell line	sgMsh2	35567593	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	0	0	NA	exonic	2300002M23Rik	nonsynonymous SNV	2300002M23Rik:NM_175148:exon1:c.T40G:p.L14V	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9870035	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	35658255	12A2p6	cell line	sgMsh2	35658255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	45	65	19	0.292307692	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon25:c.A2553G:p.L851L	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.761242617	1	0.7276465	GTA	synonymous	NA	NA	NA	NA
M7	chr17	35848547	12A2p6	cell line	sgMsh2	35848547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	82	67	18	0.268656716	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon5:c.A1818G:p.I606M	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.88887611	1	0.9724635	TAC	nonsynonymous	ATAC	9	ATACATACA	NA
M7	chr17	36041611	12A2p6	cell line	sgMsh2	36041611	G	A	SNV	Mutect2;Vardict	2	0.043	242	77	1	0.012987013	exonic	H2-T22;H2-T9	nonsynonymous SNV	"H2-T22:NM_001359754:exon3:c.C247T:p.L83F,H2-T22:NM_001359756:exon3:c.C421T:p.L141F,H2-T22:NM_010397:exon3:c.C421T:p.L141F,H2-T22:NM_001347382:exon4:c.C421T:p.L141F,H2-T22:NM_001359755:exon4:c.C421T:p.L141F,H2-T9:NM_010399:exon4:c.C421T:p.L141F"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.196008578	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr17	36260682	12A2p6	cell line	sgMsh2	36260682	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	117	13	0	0	exonic	Trim39	nonsynonymous SNV	"Trim39:NM_001374606:exon7:c.A1183G:p.K395E,Trim39:NM_024468:exon7:c.A1159G:p.K387E,Trim39:NM_178281:exon7:c.A1159G:p.K387E"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.296292037	3	0.9990804	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	36260884	12A2p6	cell line	sgMsh2	36260884	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.072	72	15	0	0	exonic	Trim39	synonymous SNV	"Trim39:NM_001374606:exon7:c.C981T:p.N327N,Trim39:NM_024468:exon7:c.C957T:p.N319N,Trim39:NM_178281:exon7:c.C957T:p.N319N"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.32820041	3	0.8823859	GGT	synonymous	NA	NA	NA	NA
M7	chr17	36909282	12A2p6	cell line	sgMsh2	36909282	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	148	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1089T:p.K363N	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999547	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	36947603	12A2p6	cell line	sgMsh2	36947603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	69	9	2	0.222222222	exonic	Rnf39	synonymous SNV	Rnf39:NM_001099632:exon4:c.T1026C:p.R342R	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.811384346	1	0.8419598	GTA	synonymous	NA	NA	NA	NA
M7	chr17	37609922	12A2p6	cell line	sgMsh2	37609922	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	243	0	0	NA	exonic	Olfr115	synonymous SNV	Olfr115:NM_001011753:exon1:c.C834T:p.Y278Y	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.966367873	1	0.9999977	TGT	synonymous	NA	NA	NA	NA
M7	chr17	37701567	12A2p6	cell line	sgMsh2	37701567	G	A	SNV	Mutect2;Vardict	2	0.036	342	0	0	NA	exonic	Olfr119	nonsynonymous SNV	"Olfr119:NM_001011830:exon2:c.G896A:p.R299K,Olfr119:NM_001360640:exon3:c.G464A:p.R155K"	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.164100205	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr17	37752250	12A2p6	cell line	sgMsh2	37752250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	576	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.T395C:p.I132T	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr17	37752421	12A2p6	cell line	sgMsh2	37752421	C	A	SNV	Mutect2;Vardict	2	0.017	708	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.C566A:p.P189H	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.077491763	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr17	37796314	12A2p6	cell line	sgMsh2	37796314	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	93	0	0	NA	exonic	Olfr123	nonsynonymous SNV	Olfr123:NM_146630:exon1:c.T869G:p.L290R	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.259825324	3	0.9997505	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	38149113	12A2p6	cell line	sgMsh2	38149113	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	193	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.A524G:p.D175G	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999965	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	38275376	12A2p6	cell line	sgMsh2	38275376	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	178	0	0	NA	exonic	Olfr138	nonsynonymous SNV	Olfr138:NM_130868:exon1:c.G604T:p.V202L	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999917	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr17	38305350	12A2p6	cell line	sgMsh2	38305350	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	138	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.T110C:p.M37T	17qB1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	1	0.9681075	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	42666616	12A2p6	cell line	sgMsh2	42666616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	142	3	0	0	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289500:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289501:exon6:c.T1835C:p.V612A,Adgrf4:NM_030067:exon6:c.T1835C:p.V612A"	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999364	AAC	nonsynonymous	T	5	TTTTT	NA
M7	chr17	42666943	12A2p6	cell line	sgMsh2	42666943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	144	1	1	1	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289500:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289501:exon6:c.T1508C:p.I503T,Adgrf4:NM_030067:exon6:c.T1508C:p.I503T"	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.893434449	1	0.9947193	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	43602838	12A2p6	cell line	sgMsh2	43602838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	148	63	1	0.015873016	exonic	Pla2g7	nonsynonymous SNV	Pla2g7:NM_013737:exon8:c.G671A:p.R224K	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999547	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr17	45517974	12A2p6	cell line	sgMsh2	45517974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	58	3	0	0	exonic	Aars2	synonymous SNV	"Aars2:NM_001358000:exon15:c.A1113G:p.P371P,Aars2:NM_198608:exon16:c.A2193G:p.P731P"	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.774917634	1	0.7382569	CAG	synonymous	NA	NA	NA	NA
M7	chr17	45539927	12A2p6	cell line	sgMsh2	45539927	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.153	29	0	0	NA	exonic	Tcte1	synonymous SNV	Tcte1:NM_013688:exon4:c.T1128C:p.G376G	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	1	0.6586431	GTG	synonymous	NA	NA	NA	NA
M7	chr17	45653595	12A2p6	cell line	sgMsh2	45653595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	76	0	0	NA	exonic	Capn11	nonsynonymous SNV	Capn11:NM_001013767:exon2:c.T178C:p.F60L	17qB3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.939017839	1	0.9895222	AAG	nonsynonymous	A	5	AAAAA	NA
M7	chr17	46306692	12A2p6	cell line	sgMsh2	46306692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	52	3	1	0.333333333	exonic	Abcc10	stopgain	"Abcc10:NM_145140:exon14:c.T3293A:p.L1098X,Abcc10:NM_001347396:exon15:c.T3416A:p.L1139X,Abcc10:NM_170680:exon15:c.T3416A:p.L1139X"	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9896146	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr17	46310187	12A2p6	cell line	sgMsh2	46310187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	98	1	0	0	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon12:c.A2773G:p.T925A,Abcc10:NM_001347396:exon13:c.A2896G:p.T966A,Abcc10:NM_170680:exon13:c.A2896G:p.T966A"	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.943576178	1	0.9960552	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	46412683	12A2p6	cell line	sgMsh2	46412683	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	75	21	3	0.142857143	exonic	Zfp318	nonsynonymous SNV	Zfp318:NM_207671:exon10:c.A5611C:p.S1871R	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9971617	AAG	nonsynonymous	AAGTA	10	AAGTAAAGTA	NA
M7	chr17	46676762	12A2p6	cell line	sgMsh2	46676762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	107	151	40	0.264900662	exonic	Klhdc3	synonymous SNV	"Klhdc3:NM_001163729:exon8:c.G864A:p.P288P,Klhdc3:NM_027910:exon9:c.G864A:p.P288P"	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995369	ACG	synonymous	NA	NA	NA	NA
M7	chr17	46801303	12A2p6	cell line	sgMsh2	46801303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	95	25	8	0.32	exonic	Bicral	synonymous SNV	Bicral:NM_001100452:exon11:c.G2970T:p.S990S	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9990856	CCG	synonymous	NA	NA	NA	NA
M7	chr17	47611064	12A2p6	cell line	sgMsh2	47611064	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	77	42	13	0.30952381	exonic	Bysl	nonsynonymous SNV	Bysl:NM_016859:exon1:c.A108C:p.K36N	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.597142412	2	0.9607443	GTT	nonsynonymous	T	5	TTTTT	NA
M7	chr17	47786944	12A2p6	cell line	sgMsh2	47786944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	212	14	2	0.142857143	exonic	Tfeb	nonsynonymous SNV	"Tfeb:NM_011549:exon3:c.T656C:p.I219T,Tfeb:NM_001161722:exon4:c.T479C:p.I160T,Tfeb:NM_001161723:exon4:c.T479C:p.I160T"	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.939017839	1	0.9999452	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr17	49069991	12A2p6	cell line	sgMsh2	49069991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	49	0	0	NA	exonic	Lrfn2	synonymous SNV	Lrfn2:NM_027452:exon2:c.A99G:p.S33S	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9877115	CAC	synonymous	NA	NA	NA	NA
M7	chr17	49488207	12A2p6	cell line	sgMsh2	49488207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	99	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001008231:exon8:c.C957T:p.H319H,Daam2:NM_001379371:exon8:c.C957T:p.H319H,Daam2:NM_001379372:exon8:c.C957T:p.H319H"	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.715659227	2	0.7504055	CGT	synonymous	NA	NA	NA	NA
M7	chr17	53497553	12A2p6	cell line	sgMsh2	53497553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	42	288	60	0.208333333	exonic	Rab5a	nonsynonymous SNV	Rab5a:NM_025887:exon3:c.C190A:p.L64I	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9818293	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr17	54284236	12A2p6	cell line	sgMsh2	54284236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	161	4	0	0	exonic	Slc5a7	stopgain	Slc5a7:NM_022025:exon6:c.A667T:p.K223X	17qC	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.733892583	2	0.8730765	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	55814243	12A2p6	cell line	sgMsh2	55814243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	167	0	0	NA	exonic	Adgre4	synonymous SNV	Adgre4:NM_139138:exon12:c.C1308T:p.L436L	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999846	TCA	synonymous	NA	NA	NA	NA
M7	chr17	56082293	12A2p6	cell line	sgMsh2	56082293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	66	78	6	0.076923077	exonic	Hdgfl2	stopgain	"Hdgfl2:NM_001304784:exon3:c.A166T:p.K56X,Hdgfl2:NM_001304785:exon3:c.A166T:p.K56X,Hdgfl2:NM_001331053:exon3:c.A166T:p.K56X,Hdgfl2:NM_008233:exon3:c.A166T:p.K56X"	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.911667805	1	0.9740983	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	135	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.920784483	1	0.9977694	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr17	56808272	12A2p6	cell line	sgMsh2	56808272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	29	0	0	NA	exonic	Rfx2	synonymous SNV	"Rfx2:NM_009056:exon2:c.C46T:p.L16L,Rfx2:NM_027787:exon2:c.C46T:p.L16L"	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9627488	AGA	synonymous	NA	NA	NA	NA
M7	chr17	56853862	12A2p6	cell line	sgMsh2	56853862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	115	0	0	NA	exonic	Acsbg2	nonsynonymous SNV	Acsbg2:NM_001039114:exon8:c.T781G:p.S261A	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.939017839	1	0.9976645	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	57062728	12A2p6	cell line	sgMsh2	57062728	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.126	47	26	9	0.346153846	exonic	Crb3	nonsynonymous SNV	"Crb3:NM_001347408:exon2:c.T35C:p.F12S,Crb3:NM_001359813:exon2:c.T35C:p.F12S,Crb3:NM_001359814:exon2:c.T35C:p.F12S,Crb3:NM_177638:exon2:c.T35C:p.F12S"	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.574350717	2	0.8377757	TTT	nonsynonymous	GTTTG	10	GTTTGGTTTG	NA
M7	chr17	57107100	12A2p6	cell line	sgMsh2	57107100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	100	40	10	0.25	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.T526A:p.Y176N	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9993113	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr17	57449994	12A2p6	cell line	sgMsh2	57449994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	65	0	0	NA	exonic	Adgre1	synonymous SNV	"Adgre1:NM_001355722:exon17:c.T2250C:p.S750S,Adgre1:NM_001355723:exon17:c.T2202C:p.S734S,Adgre1:NM_010130:exon17:c.T2250C:p.S750S"	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9950055	CTC	synonymous	NA	NA	NA	NA
M7	chr17	58102120	12A2p6	cell line	sgMsh2	58102120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	104	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon9:c.A1352G:p.H451R	17qD	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999451	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	64309493	12A2p6	cell line	sgMsh2	64309493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	246	98	21	0.214285714	exonic	Pja2	nonsynonymous SNV	"Pja2:NM_001025309:exon4:c.A406G:p.T136A,Pja2:NM_144859:exon4:c.A406G:p.T136A"	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.952692856	1	0.9999946	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr17	64834280	12A2p6	cell line	sgMsh2	64834280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	0	0	NA	exonic	4930583I09Rik	synonymous SNV	4930583I09Rik:NM_030031:exon3:c.C246T:p.S82S	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9993492	GGC	synonymous	GGCT	8	GGCTGGCT	NA
M7	chr17	66148789	12A2p6	cell line	sgMsh2	66148789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	116	24	3	0.125	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon21:c.T2104C:p.S702P,Ddx11:NM_001348292:exon21:c.T2182C:p.S728P"	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	GTC	nonsynonymous	TGTC	8	TGTCTGTC	NA
M7	chr17	66683404	12A2p6	cell line	sgMsh2	66683404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	65	7	0	0	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon29:c.A4136G:p.N1379S,Ptprm:NM_001357625:exon31:c.A4238G:p.N1413S"	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.446717224	2	0.9876552	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr17	66683413	12A2p6	cell line	sgMsh2	66683413	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	67	7	0	0	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon29:c.A4127G:p.E1376G,Ptprm:NM_001357625:exon31:c.A4229G:p.E1410G"	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.446717224	2	0.9894376	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	67738873	12A2p6	cell line	sgMsh2	67738873	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	106	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.C772G:p.P258A	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9995099	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr17	67748052	12A2p6	cell line	sgMsh2	67748052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	26	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon11:c.T1452C:p.V484V	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9561406	TTG	synonymous	NA	NA	NA	NA
M7	chr17	67871951	12A2p6	cell line	sgMsh2	67871951	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	68	0	0	NA	exonic	Arhgap28	nonsynonymous SNV	"Arhgap28:NM_001347410:exon8:c.T914G:p.L305R,Arhgap28:NM_172964:exon8:c.T1064G:p.L355R"	17qE1.1	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9957838	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr17	68461485	12A2p6	cell line	sgMsh2	68461485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	165	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.T587C:p.M196T	17qE1.2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9999827	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr17	71716495	12A2p6	cell line	sgMsh2	71716495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	48	0	0	NA	exonic	Togaram2	nonsynonymous SNV	Togaram2:NM_177087:exon17:c.T2345C:p.L782P	17qE1.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.633609124	2	7.14E-06	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	71885398	12A2p6	cell line	sgMsh2	71885398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	111	0	0	NA	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon25:c.A3805G:p.I1269V	17qE1.3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9996309	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr17	74447996	12A2p6	cell line	sgMsh2	74447996	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	77	57	21	0.368421053	exonic	Nlrc4	frameshift deletion	Nlrc4:NM_001033367:exon3:c.224delA:p.N75Tfs*9	17qE2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.856967736	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7	chr17	74596951	12A2p6	cell line	sgMsh2	74596951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	73	24	4	0.166666667	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon15:c.T3738C:p.R1246R	17qE2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9968218	GTC	synonymous	NA	NA	NA	NA
M7	chr17	74596969	12A2p6	cell line	sgMsh2	74596969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	80	27	10	0.37037037	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon15:c.A3756G:p.P1252P	17qE2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.984601229	1	0.9969242	CAT	synonymous	NA	NA	NA	NA
M7	chr17	74612081	12A2p6	cell line	sgMsh2	74612081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	125	49	9	0.183673469	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon28:c.T5905C:p.Y1969H	17qE2	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9998332	GTA	nonsynonymous	T	5	TTTTT	NA
M7	chr17	78934740	12A2p6	cell line	sgMsh2	78934740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	170	165	40	0.242424242	exonic	Cebpz	nonsynonymous SNV	Cebpz:NM_001024806:exon2:c.C1484T:p.P495L	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999987	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr17	80181649	12A2p6	cell line	sgMsh2	80181649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	140	41	7	0.170731707	exonic	Galm	synonymous SNV	Galm:NM_176963:exon5:c.T723C:p.G241G	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	2	0.9515234	GTT	synonymous	NA	NA	NA	NA
M7	chr17	80238795	12A2p6	cell line	sgMsh2	80238795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	20	30	11	0.366666667	exonic	Dhx57	nonsynonymous SNV	"Dhx57:NM_198942:exon23:c.A4000G:p.T1334A,Dhx57:NM_001163759:exon24:c.A4159G:p.T1387A"	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9394328	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	80368242	12A2p6	cell line	sgMsh2	80368242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	185	0	0	NA	exonic	Arhgef33	nonsynonymous SNV	Arhgef33:NM_001145452:exon12:c.A1219G:p.I407V	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.852409397	1	0.9825031	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr17	80615070	12A2p6	cell line	sgMsh2	80615070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	116	51	7	0.137254902	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon20:c.T1421A:p.V474D,Map4k3:NM_001360278:exon20:c.T1391A:p.V464D"	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.999722	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr17	80629329	12A2p6	cell line	sgMsh2	80629329	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	121	58	4	0.068965517	exonic	Map4k3	frameshift deletion	Map4k3:NM_001290345:exon15:c.1076delT:p.F359Sfs*18	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.615375768	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr17	81026905	12A2p6	cell line	sgMsh2	81026905	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	136	15	4	0.266666667	exonic	Thumpd2	nonsynonymous SNV	Thumpd2:NM_028138:exon10:c.A1253C:p.D418A	17qE3	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999106	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	83221013	12A2p6	cell line	sgMsh2	83221013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	34	0	0	NA	exonic	Pkdcc	synonymous SNV	Pkdcc:NM_134117:exon3:c.G810A:p.P270P	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.9716884	CGC	synonymous	NA	NA	NA	NA
M7	chr17	83221077	12A2p6	cell line	sgMsh2	83221077	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	38	4	0	0	exonic	Pkdcc	frameshift deletion	Pkdcc:NM_134117:exon3:c.874delA:p.V293fs*0	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr17	83588212	12A2p6	cell line	sgMsh2	83588212	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.243	145	0	0	NA	exonic	Kcng3	nonsynonymous SNV	Kcng3:NM_153512:exon2:c.A824G:p.N275S	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9999463	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	84575027	12A2p6	cell line	sgMsh2	84575027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	77	42	13	0.30952381	exonic	Plekhh2	nonsynonymous SNV	"Plekhh2:NM_001357987:exon11:c.T1151C:p.L384P,Plekhh2:NM_001357986:exon12:c.T2060C:p.L687P,Plekhh2:NM_177606:exon12:c.T2060C:p.L687P"	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9974654	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	85046739	12A2p6	cell line	sgMsh2	85046739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	200	4	2	0.5	exonic	Slc3a1	nonsynonymous SNV	Slc3a1:NM_009205:exon5:c.T989C:p.V330A	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.998276246	1	0.9999974	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr17	86168897	12A2p6	cell line	sgMsh2	86168897	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	40	5	0	0	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon1:c.T305A:p.F102Y	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.825059363	1	0.8589879	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr17	87135223	12A2p6	cell line	sgMsh2	87135223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	63	119	36	0.302521008	exonic	Socs5	synonymous SNV	Socs5:NM_019654:exon3:c.A1590C:p.R530R	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.829617702	1	0.8815117	GAG	synonymous	NA	NA	NA	NA
M7	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.55	55	8	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M7	chr17	87717582	12A2p6	cell line	sgMsh2	87717582	-	T	Insertion	Strelka2;Vardict	2	0.1271	291	30	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon12:c.1887_1888insT:p.G630Wfs*13	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.57936489	NA	NA	AAG	frameshift	NA	NA	NA	1
M7	chr17	87797118	12A2p6	cell line	sgMsh2	87797118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	12	0	0	NA	exonic	Kcnk12	nonsynonymous SNV	Kcnk12:NM_199251:exon1:c.C337T:p.R113C	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	2	1	1	0.09214199	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr17	88011301	12A2p6	cell line	sgMsh2	88011301	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	171	149	27	0.181208054	exonic	Fbxo11	nonsynonymous SNV	"Fbxo11:NM_001081034:exon6:c.A802G:p.N268D,Fbxo11:NM_001348248:exon6:c.A541G:p.N181D,Fbxo11:NM_001379303:exon6:c.A799G:p.N267D,Fbxo11:NM_001379304:exon6:c.A541G:p.N181D,Fbxo11:NM_001379305:exon6:c.A538G:p.N180D"	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.948134517	1	0.999831	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	88635346	12A2p6	cell line	sgMsh2	88635346	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	37	76	6	0.078947368	exonic	Ston1	frameshift deletion	Ston1:NM_029858:exon2:c.179delC:p.L62Cfs*154	17qE4	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.697425871	NA	NA	ACC	frameshift	CAG	8	CAGCAGCA	-1
M7	chr17	90565439	12A2p6	cell line	sgMsh2	90565439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	54	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon13:c.A3059G:p.K1020R,Nrxn1:NM_177284:exon14:c.A3074G:p.K1025R,Nrxn1:NM_020252:exon16:c.A3110G:p.K1037R"	17qE5	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	0.879759432	1	0.9399338	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr17	90643161	12A2p6	cell line	sgMsh2	90643161	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	89	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon7:c.C1565G:p.A522G,Nrxn1:NM_177284:exon7:c.C1553G:p.A518G,Nrxn1:NM_020252:exon9:c.C1589G:p.A530G"	17qE5	chr17-3164154-94740433	4	3	1	0.9	4.102505121	NA	1	1	1	0.9987153	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	4343023	12A2p6	cell line	sgMsh2	4343023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	98	0	0	NA	exonic	Map3k8	nonsynonymous SNV	Map3k8:NM_007746:exon3:c.T503C:p.L168P	18qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	5211194	12A2p6	cell line	sgMsh2	5211194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	62	12	2	0.166666667	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon5:c.A1843G:p.T615A,Zfp438:NM_178722:exon5:c.A1843G:p.T615A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.889343	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	5214851	12A2p6	cell line	sgMsh2	5214851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	9	2	0.222222222	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon4:c.A106G:p.T36A,Zfp438:NM_178722:exon4:c.A106G:p.T36A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr18	5766453	12A2p6	cell line	sgMsh2	5766453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	119	73	20	0.273972603	exonic	Zeb1	synonymous SNV	"Zeb1:NM_001360982:exon6:c.T795C:p.L265L,Zeb1:NM_011546:exon6:c.T963C:p.L321L,Zeb1:NM_001360981:exon7:c.T912C:p.L304L"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9994446	TTT	synonymous	NA	NA	NA	NA
M7	chr18	6220979	12A2p6	cell line	sgMsh2	6220979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	123	326	78	0.239263804	exonic	Kif5b	synonymous SNV	Kif5b:NM_008448:exon12:c.T1128C:p.I376I	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	CAA	synonymous	NA	NA	NA	NA
M7	chr18	7288548	12A2p6	cell line	sgMsh2	7288548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon4:c.A318G:p.Q106Q	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9952797	GTT	synonymous	NA	NA	NA	NA
M7	chr18	7355046	12A2p6	cell line	sgMsh2	7355046	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	243	13	0	0	exonic	Mpp7	frameshift deletion	"Mpp7:NM_001081287:exon15:c.1379delA:p.K460Rfs*11,Mpp7:NM_001360860:exon16:c.1379delA:p.K460Rfs*11"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.961809534	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr18	7403267	12A2p6	cell line	sgMsh2	7403267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	68	31	0	0	exonic	Mpp7	nonsynonymous SNV	"Mpp7:NM_001081287:exon12:c.A1042G:p.T348A,Mpp7:NM_001161620:exon12:c.A1042G:p.T348A,Mpp7:NM_001360860:exon13:c.A1042G:p.T348A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9957838	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr18	7921477	12A2p6	cell line	sgMsh2	7921477	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	114	140	42	0.3	exonic	Wac	nonsynonymous SNV	"Wac:NM_001146298:exon11:c.A1303C:p.T435P,Wac:NM_001282093:exon12:c.A1477C:p.T493P,Wac:NM_001360956:exon12:c.A1477C:p.T493P,Wac:NM_153085:exon12:c.A1612C:p.T538P"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	AAC	nonsynonymous	CAACTG	12	CAACTGCAACTG	NA
M7	chr18	9214215	12A2p6	cell line	sgMsh2	9214215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	73	4	1	0.25	exonic	Fzd8	nonsynonymous SNV	Fzd8:NM_008058:exon1:c.A1296G:p.I432M	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7476871	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	9280225	12A2p6	cell line	sgMsh2	9280225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	63	0	0	NA	exonic	Gjd4	synonymous SNV	Gjd4:NM_153086:exon2:c.T852C:p.A284A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.6173405	TAG	synonymous	NA	NA	NA	NA
M7	chr18	12189263	12A2p6	cell line	sgMsh2	12189263	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	171	28	0	0	exonic	Rmc1	frameshift deletion	Rmc1:NM_029623:exon19:c.1772delT:p.S592Lfs*5	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.961809534	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	108	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr18	13846514	12A2p6	cell line	sgMsh2	13846514	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	122	7	0	0	exonic	Zfp521	frameshift deletion	"Zfp521:NM_001360804:exon4:c.841delC:p.L281Sfs*15,Zfp521:NM_145492:exon4:c.841delC:p.L281Sfs*15"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7	chr18	14670358	12A2p6	cell line	sgMsh2	14670358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	90	40	6	0.15	exonic	Ss18	nonsynonymous SNV	"Ss18:NM_001161369:exon3:c.T182C:p.L61P,Ss18:NM_001161370:exon3:c.T182C:p.L61P,Ss18:NM_001161371:exon3:c.T182C:p.L61P,Ss18:NM_009280:exon3:c.T182C:p.L61P"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	14783620	12A2p6	cell line	sgMsh2	14783620	C	T	SNV	Mutect2;Vardict	2	0.231	12	3	0	0	exonic	Taf4b	nonsynonymous SNV	"Taf4b:NM_001100449:exon1:c.C26T:p.A9V,Taf4b:NM_001369357:exon1:c.C26T:p.A9V,Taf4b:NM_001369358:exon1:c.C26T:p.A9V"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.09214199	GCC	nonsynonymous	GCCG	10	GCCGGCCGGC	NA
M7	chr18	20110183	12A2p6	cell line	sgMsh2	20110183	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	140	0	0	NA	exonic	Dsc1	nonsynonymous SNV	"Dsc1:NM_001291804:exon3:c.T212G:p.I71S,Dsc1:NM_013504:exon3:c.T212G:p.I71S"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.360108783	3	0.7038897	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	20409613	12A2p6	cell line	sgMsh2	20409613	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	243	0	0	NA	exonic	Dsg1b	nonsynonymous SNV	Dsg1b:NM_181682:exon15:c.G3176T:p.S1059I	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.999563	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.575	141	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999327	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	20461287	12A2p6	cell line	sgMsh2	20461287	A	G	SNV	Mutect2;Strelka2	2	0.039	174	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon11:c.A1472G:p.N491S	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.177775222	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	20461290	12A2p6	cell line	sgMsh2	20461290	A	G	SNV	Mutect2;Strelka2	2	0.039	175	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon11:c.A1475G:p.D492G	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.177775222	3	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	20720135	12A2p6	cell line	sgMsh2	20720135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	144	153	25	0.163398693	exonic	B4galt6	synonymous SNV	B4galt6:NM_019737:exon3:c.T240C:p.P80P	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999432	CAG	synonymous	NA	NA	NA	NA
M7	chr18	21148113	12A2p6	cell line	sgMsh2	21148113	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	146	14	0	0	exonic	Garem1	synonymous SNV	Garem1:NM_001033445:exon4:c.C1185T:p.L395L	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.487742276	2	0.9999948	GGA	synonymous	NA	NA	NA	NA
M7	chr18	21148292	12A2p6	cell line	sgMsh2	21148292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	131	16	3	0.1875	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1006G:p.I336V	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9852877	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr18	21565519	12A2p6	cell line	sgMsh2	21565519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	187	0	0	NA	exonic	Klhl14	nonsynonymous SNV	Klhl14:NM_001081403:exon5:c.G1236A:p.M412I	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.999995	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr18	21565563	12A2p6	cell line	sgMsh2	21565563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	189	0	0	NA	exonic	Klhl14	nonsynonymous SNV	Klhl14:NM_001081403:exon5:c.C1192T:p.R398W	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999956	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr18	22105622	12A2p6	cell line	sgMsh2	22105622	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	73	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon11:c.G937T:p.G313C	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr18	22434636	12A2p6	cell line	sgMsh2	22434636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	76	0	0	NA	exonic	Asxl3	synonymous SNV	Asxl3:NM_001167777:exon6:c.A270G:p.V90V	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	TAT	synonymous	NA	NA	NA	NA
M7	chr18	22769784	12A2p6	cell line	sgMsh2	22769784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	201	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon8:c.T1169C:p.L390P,Nol4:NM_001347509:exon8:c.T1388C:p.L463P,Nol4:NM_001361223:exon9:c.T923C:p.L308P"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999978	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	140	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	23039830	12A2p6	cell line	sgMsh2	23039830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	82	0	0	NA	exonic	Nol4	synonymous SNV	"Nol4:NM_001347509:exon1:c.T213C:p.R71R,Nol4:NM_001347510:exon1:c.T213C:p.R71R,Nol4:NM_199024:exon1:c.T213C:p.R71R"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	CAC	synonymous	C	5	CCCCC	NA
M7	chr18	23646896	12A2p6	cell line	sgMsh2	23646896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	75	13	2	0.153846154	exonic	Dtna	nonsynonymous SNV	"Dtna:NM_001285817:exon17:c.A1741G:p.S581G,Dtna:NM_001361215:exon17:c.A1741G:p.S581G,Dtna:NM_001285808:exon18:c.A1762G:p.S588G,Dtna:NM_001285810:exon18:c.A1750G:p.S584G,Dtna:NM_001361216:exon18:c.A1741G:p.S581G,Dtna:NM_001361217:exon18:c.A1741G:p.S581G,Dtna:NM_207650:exon18:c.A1741G:p.S581G,Dtna:NM_001285813:exon19:c.A1750G:p.S584G,Dtna:NM_001285807:exon22:c.A1933G:p.S645G"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	24679789	12A2p6	cell line	sgMsh2	24679789	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	99	8	0	0	exonic	Mocos	nonsynonymous SNV	Mocos:NM_026779:exon8:c.T1739A:p.I580N	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr18	25140584	12A2p6	cell line	sgMsh2	25140584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	182	31	5	0.161290323	exonic	Tpgs2	nonsynonymous SNV	"Tpgs2:NM_001004361:exon6:c.A519G:p.I173M,Tpgs2:NM_001142697:exon6:c.A378G:p.I126M,Tpgs2:NM_001142698:exon6:c.A519G:p.I173M"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr18	31698534	12A2p6	cell line	sgMsh2	31698534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	155	81	12	0.148148148	exonic	Sap130	synonymous SNV	"Sap130:NM_001357554:exon16:c.A2076G:p.K692K,Sap130:NM_001357555:exon16:c.A2133G:p.K711K,Sap130:NM_172965:exon16:c.A2073G:p.K691K"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	AAT	synonymous	NA	NA	NA	NA
M7	chr18	31887733	12A2p6	cell line	sgMsh2	31887733	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	79	88	17	0.193181818	exonic	Wdr33	nonsynonymous SNV	Wdr33:NM_028866:exon15:c.A1555C:p.N519H	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr18	31910808	12A2p6	cell line	sgMsh2	31910808	A	T	SNV	Mutect2;MuSe	2	0.273	9	0	0	NA	exonic	Sft2d3	nonsynonymous SNV	Sft2d3:NM_026006:exon1:c.T431A:p.L144H	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.8922557	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	34312372	12A2p6	cell line	sgMsh2	34312372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	218	63	14	0.222222222	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2143G:p.I715V,Apc:NM_007462:exon16:c.A2320G:p.I774V,Apc:NM_001360980:exon17:c.A2374G:p.I792V"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999991	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	34312898	12A2p6	cell line	sgMsh2	34312898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	231	60	13	0.216666667	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2669G:p.Y890C,Apc:NM_007462:exon16:c.A2846G:p.Y949C,Apc:NM_001360980:exon17:c.A2900G:p.Y967C"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9999984	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	34317049	12A2p6	cell line	sgMsh2	34317049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	131	85	18	0.211764706	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A6820G:p.R2274G,Apc:NM_007462:exon16:c.A6997G:p.R2333G,Apc:NM_001360980:exon17:c.A7051G:p.R2351G"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9938623	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	34425065	12A2p6	cell line	sgMsh2	34425065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	135	0	0	NA	exonic	Pkd2l2	nonsynonymous SNV	"Pkd2l2:NM_001163004:exon6:c.T796C:p.F266L,Pkd2l2:NM_016927:exon6:c.T796C:p.F266L"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9997901	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	34905059	12A2p6	cell line	sgMsh2	34905059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	114	616	130	0.211038961	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon11:c.T1243C:p.Y415H	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	34913597	12A2p6	cell line	sgMsh2	34913597	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	89	570	13	0.022807018	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon4:c.T359C:p.I120T	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.27805868	3	0.9985168	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	35152663	12A2p6	cell line	sgMsh2	35152663	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	147	535	94	0.175700935	exonic	Ctnna1	nonsynonymous SNV	Ctnna1:NM_009818:exon2:c.A61G:p.R21G	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.765800956	2	0.5582345	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	35581231	12A2p6	cell line	sgMsh2	35581231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	138	592	124	0.209459459	exonic	Matr3	nonsynonymous SNV	Matr3:NM_010771:exon7:c.T1244C:p.L415P	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.6635897	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr18	36451119	12A2p6	cell line	sgMsh2	36451119	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	177	761	184	0.241787122	exonic	Pfdn1	nonsynonymous SNV	Pfdn1:NM_026027:exon2:c.T161G:p.L54R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.984662	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	36535583	12A2p6	cell line	sgMsh2	36535583	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	141	2	0	0	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_172830:exon15:c.G1999A:p.A667T,Slc4a9:NM_001271544:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271545:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271546:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271547:exon16:c.G2215A:p.A739T"	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	36560816	12A2p6	cell line	sgMsh2	36560816	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	14	12	2	0.166666667	exonic	Ankhd1	nonsynonymous SNV	Ankhd1:NM_175375:exon1:c.G79A:p.G27R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	1	0.9168965	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr18	36682671	12A2p6	cell line	sgMsh2	36682671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	126	82	19	0.231707317	exonic	Slc35a4	nonsynonymous SNV	"Slc35a4:NM_026404:exon3:c.A553G:p.T185A,Slc35a4:NM_001083317:exon4:c.A553G:p.T185A,Slc35a4:NM_001360989:exon4:c.A553G:p.T185A"	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.999082	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	36941375	12A2p6	cell line	sgMsh2	36941375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	156	0	0	NA	exonic	Pcdha2	synonymous SNV	Pcdha2:NM_198117:exon1:c.T2058C:p.A686A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1.00E-09	CTG	synonymous	TGC	8	TGCTGCTG	NA
M7	chr18	36947985	12A2p6	cell line	sgMsh2	36947985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	155	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.G1779A:p.A593A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	CGG	synonymous	NA	NA	NA	NA
M7	chr18	36999240	12A2p6	cell line	sgMsh2	36999240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	364	0	0	NA	exonic	Pcdha9	nonsynonymous SNV	Pcdha9:NM_138661:exon1:c.T1361C:p.V454A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	1.22E-09	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
M7	chr18	37010954	12A2p6	cell line	sgMsh2	37010954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	206	0	0	NA	exonic	Pcdha11	nonsynonymous SNV	Pcdha11:NM_009960:exon1:c.T97C:p.Y33H	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999983	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37012278	12A2p6	cell line	sgMsh2	37012278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	435	0	0	NA	exonic	Pcdha11	nonsynonymous SNV	Pcdha11:NM_009960:exon1:c.T1421C:p.F474S	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37144501	12A2p6	cell line	sgMsh2	37144501	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	74	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.C533T:p.A178V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9796095	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr18	37144555	12A2p6	cell line	sgMsh2	37144555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	75	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.T587C:p.L196P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37302917	12A2p6	cell line	sgMsh2	37302917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	274	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	3.66E-08	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr18	37308460	12A2p6	cell line	sgMsh2	37308460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	286	0	0	NA	exonic	Pcdhb4	synonymous SNV	Pcdhb4:NM_053129:exon1:c.T822C:p.Y274Y	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	1.90E-08	ATG	synonymous	NA	NA	NA	NA
M7	chr18	37309772	12A2p6	cell line	sgMsh2	37309772	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	241	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.A2134T:p.R712W	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	37402875	12A2p6	cell line	sgMsh2	37402875	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	295	0	0	NA	exonic	Pcdhb9	synonymous SNV	Pcdhb9:NM_053134:exon1:c.T1921C:p.L641L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	1.18E-08	GTT	synonymous	NA	NA	NA	NA
M7	chr18	37442601	12A2p6	cell line	sgMsh2	37442601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	173	0	0	NA	exonic	Pcdhb13	nonsynonymous SNV	Pcdhb13:NM_053138:exon1:c.A31G:p.R11G	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.999989	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	37443677	12A2p6	cell line	sgMsh2	37443677	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.214	162	0	0	NA	exonic	Pcdhb13	synonymous SNV	Pcdhb13:NM_053138:exon1:c.A1107G:p.S369S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999338	CAG	synonymous	NA	NA	NA	NA
M7	chr18	37443679	12A2p6	cell line	sgMsh2	37443679	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.214	162	0	0	NA	exonic	Pcdhb13	nonsynonymous SNV	Pcdhb13:NM_053138:exon1:c.A1109C:p.D370A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999338	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37478269	12A2p6	cell line	sgMsh2	37478269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	103	0	0	NA	exonic	Pcdhb16	frameshift deletion	Pcdhb16:NM_053141:exon1:c.281delA:p.K95Nfs*10	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr18	37478449	12A2p6	cell line	sgMsh2	37478449	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	211	2	2	1	exonic	Pcdhb16	nonsynonymous SNV	Pcdhb16:NM_053141:exon1:c.C461A:p.P154H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999975	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37478954	12A2p6	cell line	sgMsh2	37478954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	145	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A966G:p.A322A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9997731	CAA	synonymous	NA	NA	NA	NA
M7	chr18	37479298	12A2p6	cell line	sgMsh2	37479298	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	325	0	0	NA	exonic	Pcdhb16	nonsynonymous SNV	Pcdhb16:NM_053141:exon1:c.A1310G:p.N437S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.993201	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	37479314	12A2p6	cell line	sgMsh2	37479314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	311	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A1326G:p.V442V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9977539	TAT	synonymous	NA	NA	NA	NA
M7	chr18	37515185	12A2p6	cell line	sgMsh2	37515185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	366	1	0	0	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1366G:p.T456A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	1.38E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	37663395	12A2p6	cell line	sgMsh2	37663395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	156	0	0	NA	exonic	Pcdhga1	nonsynonymous SNV	Pcdhga1:NM_033584:exon1:c.A1451G:p.N484S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.670075836	2	0.9915283	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37664102	12A2p6	cell line	sgMsh2	37664102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	124	0	0	NA	exonic	Pcdhga1	nonsynonymous SNV	Pcdhga1:NM_033584:exon1:c.T2158C:p.Y720H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37674769	12A2p6	cell line	sgMsh2	37674769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	171	1	1	1	exonic	Pcdhga3	synonymous SNV	Pcdhga3:NM_033586:exon1:c.C274T:p.L92L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9999733	GCT	synonymous	NA	NA	NA	NA
M7	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	239	1	1	1	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	37682066	12A2p6	cell line	sgMsh2	37682066	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	288	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.C1609T:p.R537C	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	1.71E-08	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr18	37733348	12A2p6	cell line	sgMsh2	37733348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	255	0	0	NA	exonic	Pcdhgb5	nonsynonymous SNV	Pcdhgb5:NM_033577:exon1:c.A2195C:p.K732T	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	37739233	12A2p6	cell line	sgMsh2	37739233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	144	0	0	NA	exonic	Pcdhga9	nonsynonymous SNV	Pcdhga9:NM_033592:exon1:c.T2114C:p.L705P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9643393	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37742541	12A2p6	cell line	sgMsh2	37742541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	202	20	4	0.2	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.A301G:p.K101E	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999979	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37753480	12A2p6	cell line	sgMsh2	37753480	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	160	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1702A:p.D568N	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999771	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37758106	12A2p6	cell line	sgMsh2	37758106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	133	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A2166G:p.L722L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9971494	TAC	synonymous	NA	NA	NA	NA
M7	chr18	37767458	12A2p6	cell line	sgMsh2	37767458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	107	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A1342G:p.N448D	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr18	37768454	12A2p6	cell line	sgMsh2	37768454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	102	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A2338C:p.I780L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	37890816	12A2p6	cell line	sgMsh2	37890816	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	15	19	3	0.157894737	exonic	Diaph1	synonymous SNV	"Diaph1:NM_007858:exon15:c.T1968C:p.A656A,Diaph1:NM_001305980:exon16:c.T1995C:p.A665A,Diaph1:NM_001305981:exon17:c.T1863C:p.A621A"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	1	0.9211255	TAG	synonymous	NA	NA	NA	NA
M7	chr18	38283912	12A2p6	cell line	sgMsh2	38283912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	67	0	0	NA	exonic	Pcdh12	synonymous SNV	Pcdh12:NM_017378:exon1:c.A159G:p.L53L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	TTA	synonymous	NA	NA	NA	NA
M7	chr18	38447702	12A2p6	cell line	sgMsh2	38447702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	156	275	47	0.170909091	exonic	Ndfip1	nonsynonymous SNV	"Ndfip1:NM_001355749:exon3:c.T163C:p.Y55H,Ndfip1:NM_022996:exon3:c.T163C:p.Y55H"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999713	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	39296795	12A2p6	cell line	sgMsh2	39296795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	119	0	0	NA	exonic	Arhgap26	nonsynonymous SNV	"Arhgap26:NM_001361073:exon19:c.C1709T:p.T570M,Arhgap26:NM_001374831:exon19:c.C1709T:p.T570M,Arhgap26:NM_175164:exon19:c.C1709T:p.T570M"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9527504	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr18	42101680	12A2p6	cell line	sgMsh2	42101680	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	75	0	0	NA	exonic	Sh3rf2	nonsynonymous SNV	"Sh3rf2:NM_001146299:exon2:c.C527T:p.A176V,Sh3rf2:NM_172966:exon2:c.C527T:p.A176V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr18	42250904	12A2p6	cell line	sgMsh2	42250904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	128	286	33	0.115384615	exonic	Lars	synonymous SNV	Lars:NM_134137:exon4:c.A225G:p.A75A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9933565	CTG	synonymous	NA	NA	NA	NA
M7	chr18	42648681	12A2p6	cell line	sgMsh2	42648681	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	198	1	0	0	exonic	Ppp2r2b	nonsynonymous SNV	"Ppp2r2b:NM_027531:exon8:c.T1045A:p.S349T,Ppp2r2b:NM_028392:exon8:c.T1054A:p.S352T"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.191450239	3	1.00E-09	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	43324394	12A2p6	cell line	sgMsh2	43324394	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	96	16	4	0.25	exonic	Dpysl3	nonsynonymous SNV	"Dpysl3:NM_001136086:exon14:c.T1645G:p.S549A,Dpysl3:NM_001291455:exon14:c.T1990G:p.S664A,Dpysl3:NM_009468:exon14:c.T1651G:p.S551A"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9311507	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	45685341	12A2p6	cell line	sgMsh2	45685341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	136	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	"Kcnn2:NM_080465:exon8:c.A1504G:p.I502V,Kcnn2:NM_001312905:exon11:c.A2329G:p.I777V"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.8267531	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	46262918	12A2p6	cell line	sgMsh2	46262918	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	194	30	4	0.133333333	exonic	Pggt1b	nonsynonymous SNV	Pggt1b:NM_172627:exon3:c.A299G:p.Y100C	18qC	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999967	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.3623	69	8	0	0	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M7	chr18	46881476	12A2p6	cell line	sgMsh2	46881476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	203	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon9:c.T1640C:p.M547T	18qC	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.777945	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr18	52488740	12A2p6	cell line	sgMsh2	52488740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	148	70	27	0.385714286	exonic	Srfbp1	nonsynonymous SNV	Srfbp1:NM_026040:exon6:c.G872A:p.S291N	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9952236	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr18	52695207	12A2p6	cell line	sgMsh2	52695207	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	242	0	0	NA	exonic	Gykl1	nonsynonymous SNV	Gykl1:NM_010293:exon1:c.A1486G:p.S496G	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	54895603	12A2p6	cell line	sgMsh2	54895603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	60	32	8	0.25	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon5:c.A2459G:p.Y820C,Zfp608:NM_175751:exon6:c.A3737G:p.Y1246C"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	57275696	12A2p6	cell line	sgMsh2	57275696	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	55	2	0	0	exonic	Megf10	nonsynonymous SNV	Megf10:NM_001001979:exon14:c.G1709T:p.S570I	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr18	57912879	12A2p6	cell line	sgMsh2	57912879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	167	1084	283	0.261070111	exonic	Slc12a2	nonsynonymous SNV	Slc12a2:NM_009194:exon13:c.T2030C:p.L677P	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9953593	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	58556666	12A2p6	cell line	sgMsh2	58556666	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	39	13	0.333333333	exonic	Slc27a6	nonsynonymous SNV	Slc27a6:NM_001081072:exon1:c.C203A:p.P68Q	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr18	58572068	12A2p6	cell line	sgMsh2	58572068	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.309	59	42	0	0	exonic	Slc27a6	frameshift insertion	Slc27a6:NM_001081072:exon2:c.522dupA:p.H176Tfs*25	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M7	chr18	58609258	12A2p6	cell line	sgMsh2	58609258	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	144	53	15	0.283018868	exonic	Slc27a6	nonsynonymous SNV	Slc27a6:NM_001081072:exon8:c.C1543T:p.R515C	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9704449	GCG	nonsynonymous	GTGTGC	12	GTGTGCGTGTGC	NA
M7	chr18	60246315	12A2p6	cell line	sgMsh2	60246315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	142	0	0	NA	exonic	Gm4951	synonymous SNV	Gm4951:NM_001033767:exon3:c.G921A:p.K307K	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	AGT	synonymous	NA	NA	NA	NA
M7	chr18	60912385	12A2p6	cell line	sgMsh2	60912385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	45	0	0	NA	exonic	Arsi	nonsynonymous SNV	Arsi:NM_001038499:exon1:c.T146C:p.I49T	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr18	61083359	12A2p6	cell line	sgMsh2	61083359	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	83	0	0	NA	exonic	Pdgfrb	synonymous SNV	"Pdgfrb:NM_001146268:exon23:c.T3276G:p.A1092A,Pdgfrb:NM_008809:exon23:c.T3273G:p.A1091A"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	CTG	synonymous	NA	NA	NA	NA
M7	chr18	61311113	12A2p6	cell line	sgMsh2	61311113	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	83	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon5:c.A978C:p.Q326H,Ppargc1b:NM_001364996:exon6:c.A1026C:p.Q342H"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	62596213	12A2p6	cell line	sgMsh2	62596213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	150	0	0	NA	exonic	Spink7	nonsynonymous SNV	Spink7:NM_001001803:exon1:c.A52G:p.N18D	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999596	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr18	63042454	12A2p6	cell line	sgMsh2	63042454	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	108	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon39:c.C5855G:p.A1952G	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	GGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
M7	chr18	63106236	12A2p6	cell line	sgMsh2	63106236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	68	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon16:c.T2272C:p.Y758H	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7543544	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr18	66002588	12A2p6	cell line	sgMsh2	66002588	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	14	87	17	0.195402299	exonic	Lman1	synonymous SNV	"Lman1:NM_001172062:exon1:c.T24A:p.V8V,Lman1:NM_027400:exon1:c.T24A:p.V8V"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	2	1	1	0.9168965	GAA	synonymous	NA	NA	NA	NA
M7	chr18	67218523	12A2p6	cell line	sgMsh2	67218523	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	145	0	0	NA	exonic	Gnal	nonsynonymous SNV	"Gnal:NM_010307:exon11:c.A951T:p.E317D,Gnal:NM_177137:exon11:c.A1152T:p.E384D"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7611859	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	67306706	12A2p6	cell line	sgMsh2	67306706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	42	7	0.166666667	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon3:c.A272G:p.K91R	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.70198421	2	0.5455119	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	67623224	12A2p6	cell line	sgMsh2	67623224	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	107	7	1	0.142857143	exonic	Cep76	synonymous SNV	"Cep76:NM_001081073:exon10:c.A1536G:p.P512P,Cep76:NM_001357523:exon10:c.A1002G:p.P334P"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9984512	GTG	synonymous	NA	NA	NA	NA
M7	chr18	68314063	12A2p6	cell line	sgMsh2	68314063	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.23	194	196	51	0.260204082	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.T1017A:p.N339K,Rnmt:NM_026440:exon7:c.T1017A:p.N339K,Rnmt:NM_001361002:exon8:c.T1017A:p.N339K"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999967	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr18	68314065	12A2p6	cell line	sgMsh2	68314065	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.23	194	197	52	0.263959391	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.A1019C:p.Y340S,Rnmt:NM_026440:exon7:c.A1019C:p.Y340S,Rnmt:NM_001361002:exon8:c.A1019C:p.Y340S"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999967	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr18	71446395	12A2p6	cell line	sgMsh2	71446395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	31	0	0	NA	exonic	Dcc	synonymous SNV	Dcc:NM_007831:exon14:c.T2106C:p.N702N	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.966611	CAT	synonymous	NA	NA	NA	NA
M7	chr18	71809108	12A2p6	cell line	sgMsh2	71809108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	212	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon5:c.A937G:p.T313A	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr18	73739145	12A2p6	cell line	sgMsh2	73739145	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	124	7	0	0	exonic	Elac1	nonsynonymous SNV	Elac1:NM_053255:exon4:c.G778A:p.G260R	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9937464	CCG	nonsynonymous	C	5	CCCCC	NA
M7	chr18	73930922	12A2p6	cell line	sgMsh2	73930922	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	49	3	1	0.333333333	exonic	Mapk4	nonsynonymous SNV	"Mapk4:NM_001360936:exon5:c.T691A:p.S231T,Mapk4:NM_172632:exon6:c.T1228A:p.S410T"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9877115	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr18	73937142	12A2p6	cell line	sgMsh2	73937142	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	101	6	0	0	exonic	Mapk4	frameshift deletion	"Mapk4:NM_001360936:exon2:c.142delA:p.M48Cfs*15,Mapk4:NM_172632:exon3:c.679delA:p.M227Cfs*15"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.788592651	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr18	74949253	12A2p6	cell line	sgMsh2	74949253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	33	0	0	NA	exonic	Lipg	nonsynonymous SNV	Lipg:NM_010720:exon5:c.G598A:p.E200K	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.968254	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr18	77254811	12A2p6	cell line	sgMsh2	77254811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	67	0	0	NA	exonic	St8sia5	nonsynonymous SNV	"St8sia5:NM_153124:exon7:c.A1108G:p.T370A,St8sia5:NM_013666:exon8:c.A1216G:p.T406A"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.7022783	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	77286450	12A2p6	cell line	sgMsh2	77286450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	84	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon2:c.G216T:p.G72G	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	GGC	synonymous	NA	NA	NA	NA
M7	chr18	77295884	12A2p6	cell line	sgMsh2	77295884	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	83	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon4:c.C478T:p.L160L	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	GCT	synonymous	NA	NA	NA	NA
M7	chr18	78120159	12A2p6	cell line	sgMsh2	78120159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	98	20	17	0.85	exonic	Slc14a1	nonsynonymous SNV	Slc14a1:NM_001171010:exon2:c.T136C:p.W46R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr18	78856858	12A2p6	cell line	sgMsh2	78856858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	84	18	6	0.333333333	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A3593G:p.K1198R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr18	78858793	12A2p6	cell line	sgMsh2	78858793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	121	27	8	0.296296296	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A1658G:p.Y553C	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr18	80446059	12A2p6	cell line	sgMsh2	80446059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	103	32	9	0.28125	exonic	Ctdp1	synonymous SNV	Ctdp1:NM_026295:exon10:c.T2217C:p.S739S	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	CAC	synonymous	NA	NA	NA	NA
M7	chr18	89013091	12A2p6	cell line	sgMsh2	89013091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	95	15	5	0.333333333	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1925G:p.I642S	18qE4	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr18	89113375	12A2p6	cell line	sgMsh2	89113375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	94	8	1	0.125	exonic	Rttn	synonymous SNV	Rttn:NM_175542:exon44:c.T5877C:p.P1959P	18qE4	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7	chr18	89115505	12A2p6	cell line	sgMsh2	89115505	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	108	16	1	0.0625	exonic	Rttn	frameshift deletion	Rttn:NM_175542:exon45:c.6014delC:p.S2007Vfs*3	18qE4	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr19	3493957	12A2p6	cell line	sgMsh2	3493957	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	223	233	37	0.158798283	exonic	Ppp6r3	nonsynonymous SNV	"Ppp6r3:NM_001164159:exon9:c.A1057T:p.S353C,Ppp6r3:NM_001360429:exon10:c.A1057T:p.S353C,Ppp6r3:NM_001360430:exon10:c.A1057T:p.S353C,Ppp6r3:NM_028999:exon10:c.A1057T:p.S353C,Ppp6r3:NM_029456:exon10:c.A1057T:p.S353C"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	3620251	12A2p6	cell line	sgMsh2	3620251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	112	139	15	0.107913669	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon9:c.A1852C:p.T618P	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	3814934	12A2p6	cell line	sgMsh2	3814934	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	86	73	2	0.02739726	exonic	Kmt5b	nonsynonymous SNV	"Kmt5b:NM_001379679:exon10:c.A1928G:p.D643G,Kmt5b:NM_001167886:exon11:c.A1928G:p.D643G,Kmt5b:NM_001379678:exon11:c.A1997G:p.D666G,Kmt5b:NM_001167887:exon12:c.A1997G:p.D666G,Kmt5b:NM_144871:exon12:c.A1928G:p.D643G,Kmt5b:NM_001167885:exon13:c.A1997G:p.D666G"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	3896271	12A2p6	cell line	sgMsh2	3896271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	88	17	1	0.058823529	exonic	Tcirg1	nonsynonymous SNV	"Tcirg1:NM_001136091:exon19:c.T2425C:p.W809R,Tcirg1:NM_001167784:exon19:c.T2425C:p.W809R,Tcirg1:NM_016921:exon19:c.T2425C:p.W809R"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	3896637	12A2p6	cell line	sgMsh2	3896637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	129	30	4	0.133333333	exonic	Tcirg1	synonymous SNV	"Tcirg1:NM_001136091:exon18:c.T2215C:p.L739L,Tcirg1:NM_001167784:exon18:c.T2215C:p.L739L,Tcirg1:NM_016921:exon18:c.T2215C:p.L739L"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M7	chr19	3943578	12A2p6	cell line	sgMsh2	3943578	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	75	22	0	0	exonic	Unc93b1	nonsynonymous SNV	"Unc93b1:NM_001161428:exon8:c.T1019G:p.L340R,Unc93b1:NM_019449:exon8:c.T1019G:p.L340R"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	4324783	12A2p6	cell line	sgMsh2	4324783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	53	118	31	0.262711864	exonic	Kdm2a	synonymous SNV	Kdm2a:NM_001001984:exon17:c.A2319G:p.V773V	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7	chr19	4450930	12A2p6	cell line	sgMsh2	4450930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	150	11	1	0.090909091	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1091G:p.Q364R	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	CACCT	10	CACCTCACCT	NA
M7	chr19	4617649	12A2p6	cell line	sgMsh2	4617649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	102	28	7	0.25	exonic	Pcx	nonsynonymous SNV	"Pcx:NM_008797:exon11:c.T1438C:p.F480L,Pcx:NM_001162946:exon12:c.T1441C:p.F481L"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.711	84	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	4864044	12A2p6	cell line	sgMsh2	4864044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	120	1	0	0	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon15:c.A1784G:p.Y595C	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	100	1	1	1	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	5039797	12A2p6	cell line	sgMsh2	5039797	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	127	61	17	0.278688525	exonic	B4gat1	nonsynonymous SNV	B4gat1:NM_175383:exon1:c.A821C:p.E274A	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5098235	12A2p6	cell line	sgMsh2	5098235	T	C	SNV	Mutect2;Vardict	2	0.1	42	2	0	0	exonic	Cnih2	nonsynonymous SNV	Cnih2:NM_009920:exon1:c.A29G:p.Y10C	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	5286848	12A2p6	cell line	sgMsh2	5286848	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	121	708	11	0.015536723	exonic	Sf3b2	nonsynonymous SNV	"Sf3b2:NM_001362454:exon10:c.A1229G:p.H410R,Sf3b2:NM_030109:exon10:c.A1232G:p.H411R"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5390984	12A2p6	cell line	sgMsh2	5390984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	0	0	NA	exonic	Tsga10ip	nonsynonymous SNV	Tsga10ip:NM_001373978:exon6:c.A1322G:p.Y441C	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	5422967	12A2p6	cell line	sgMsh2	5422967	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.224	64	350	2	0.005714286	exonic	Drap1	frameshift insertion	"Drap1:NM_001291080:exon7:c.591dupC:p.G198Rfs*9,Drap1:NM_024176:exon7:c.570dupC:p.G191Rfs*9"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CCG	frameshift	G	5	GGGGG	1
M7	chr19	5426195	12A2p6	cell line	sgMsh2	5426195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	79	62	25	0.403225806	exonic	AI837181	nonsynonymous SNV	AI837181:NM_134149:exon2:c.T385C:p.Y129H	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	5570890	12A2p6	cell line	sgMsh2	5570890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	80	4	2	0.5	exonic	Ap5b1	synonymous SNV	"Ap5b1:NM_001033448:exon2:c.T2337C:p.R779R,Ap5b1:NM_001362046:exon3:c.T2337C:p.R779R"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M7	chr19	5655062	12A2p6	cell line	sgMsh2	5655062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	19	4	0.210526316	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon8:c.T1504C:p.F502L,Sipa1:NM_001164568:exon8:c.T1504C:p.F502L,Sipa1:NM_001164480:exon9:c.T1504C:p.F502L,Sipa1:NM_011379:exon9:c.T1504C:p.F502L,Sipa1:NM_001164481:exon10:c.T1504C:p.F502L"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	143	71	19	0.267605634	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr19	5702130	12A2p6	cell line	sgMsh2	5702130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	81	59	10	0.169491525	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2339G:p.D780G	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	5720645	12A2p6	cell line	sgMsh2	5720645	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	88	99	17	0.171717172	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114597:exon8:c.A785C:p.Q262P,Ehbp1l1:NM_001381901:exon8:c.A785C:p.Q262P,Ehbp1l1:NM_053252:exon8:c.A785C:p.Q262P"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	106	530	151	0.28490566	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5766276	12A2p6	cell line	sgMsh2	5766276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	152	229	41	0.179039301	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon6:c.T890A:p.L297Q,Scyl1:NM_001361922:exon6:c.T890A:p.L297Q,Scyl1:NM_023912:exon6:c.T890A:p.L297Q"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5940924	12A2p6	cell line	sgMsh2	5940924	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	36	75	30	0.4	exonic	Pola2	nonsynonymous SNV	Pola2:NM_008893:exon18:c.A1741C:p.K581Q	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	5972998	12A2p6	cell line	sgMsh2	5972998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	120	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon7:c.A1116G:p.V372V	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7	chr19	6014449	12A2p6	cell line	sgMsh2	6014449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	61	138	17	0.123188406	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon2:c.A19G:p.T7A,Capn1:NM_007600:exon2:c.A19G:p.T7A"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	6049233	12A2p6	cell line	sgMsh2	6049233	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	156	51	4	0.078431373	exonic	Syvn1	stopgain	"Syvn1:NM_001164709:exon6:c.C511T:p.Q171X,Syvn1:NM_028769:exon6:c.C511T:p.Q171X"	19qA	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr19	6082695	12A2p6	cell line	sgMsh2	6082695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	68	164	24	0.146341463	exonic	Zfpl1	nonsynonymous SNV	"Zfpl1:NM_001356994:exon4:c.T298C:p.C100R,Zfpl1:NM_024231:exon4:c.T298C:p.C100R"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	0.998276246	1	0.9956358	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	6112724	12A2p6	cell line	sgMsh2	6112724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	171	2	0	0	exonic	Naaladl1	synonymous SNV	Naaladl1:NM_001009546:exon12:c.T1461C:p.S487S	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.629050785	2	0.9994186	GTA	synonymous	NA	NA	NA	NA
M7	chr19	6119936	12A2p6	cell line	sgMsh2	6119936	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	83	62	5	0.080645161	exonic	Snx15	nonsynonymous SNV	Snx15:NM_026912:exon8:c.G941A:p.R314H	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.483183936	2	0.998102	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr19	6831401	12A2p6	cell line	sgMsh2	6831401	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	63	97	20	0.206185567	exonic	Rps6ka4	nonsynonymous SNV	Rps6ka4:NM_019924:exon13:c.T1475C:p.L492S	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.382900478	2	0.7837584	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr19	6855474	12A2p6	cell line	sgMsh2	6855474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	87	0	0	NA	exonic	Ccdc88b	nonsynonymous SNV	Ccdc88b:NM_001081291:exon10:c.A959G:p.Y320C	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	1	0.9985612	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	79	44	11	0.25	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	1	0.9977367	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	6986435	12A2p6	cell line	sgMsh2	6986435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	113	160	26	0.1625	exonic	Vegfb	nonsynonymous SNV	"Vegfb:NM_001185164:exon3:c.T155C:p.V52A,Vegfb:NM_011697:exon3:c.T155C:p.V52A"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.711100888	2	0.8369896	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M7	chr19	7097161	12A2p6	cell line	sgMsh2	7097161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	101	0	0	NA	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.C20T:p.A7V	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.5606757	2	0.9969338	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	7613340	12A2p6	cell line	sgMsh2	7613340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	204	0	0	NA	exonic	Plaat5	synonymous SNV	"Plaat5:NM_001368696:exon2:c.T159C:p.S53S,Plaat5:NM_025731:exon2:c.T159C:p.S53S"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.70198421	2	0.9918172	GTT	synonymous	NA	NA	NA	NA
M7	chr19	8071840	12A2p6	cell line	sgMsh2	8071840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	409	0	0	NA	exonic	Slc22a28	nonsynonymous SNV	Slc22a28:NM_001013820:exon6:c.A1043G:p.N348S	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.697425871	2	0.9999924	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr19	8386728	12A2p6	cell line	sgMsh2	8386728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	280	0	0	NA	exonic	Slc22a30	nonsynonymous SNV	Slc22a30:NM_177002:exon3:c.T583C:p.S195P	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.820501024	1	0.9327325	GAG	nonsynonymous	GGAG	8	GGAGGGAG	NA
M7	chr19	8764999	12A2p6	cell line	sgMsh2	8764999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	213	161	30	0.186335404	exonic	Nxf1	synonymous SNV	"Nxf1:NM_001276704:exon10:c.T981C:p.C327C,Nxf1:NM_016813:exon10:c.T981C:p.C327C"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	0.993717907	1	0.9999983	GTG	synonymous	NA	NA	NA	NA
M7	chr19	8773595	12A2p6	cell line	sgMsh2	8773595	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	88	49	17	0.346938776	exonic	Tmem179b	nonsynonymous SNV	Tmem179b:NM_026325:exon2:c.T194A:p.F65Y	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	1	0.9986404	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr19	8778120	12A2p6	cell line	sgMsh2	8778120	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	100	26	4	0.153846154	exonic	Taf6l	synonymous SNV	"Taf6l:NM_001177798:exon10:c.G873A:p.G291G,Taf6l:NM_146092:exon10:c.G948A:p.G316G"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	1	0.9993113	CCC	synonymous	NA	NA	NA	NA
M7	chr19	8826653	12A2p6	cell line	sgMsh2	8826653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	198	520	79	0.151923077	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon10:c.T1615C:p.Y539H	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.469508919	2	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	8907247	12A2p6	cell line	sgMsh2	8907247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	155	451	62	0.137472284	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon5:c.T413C:p.V138A,Ganab:NM_008060:exon5:c.T413C:p.V138A"	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.647284141	2	0.9968785	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	9003288	12A2p6	cell line	sgMsh2	9003288	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	290	432	50	0.115740741	exonic	Ahnak	synonymous SNV	Ahnak:NM_009643:exon5:c.A1935G:p.E645E	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.601700751	2	0.9999999	AAG	synonymous	NA	NA	NA	NA
M7	chr19	9004009	12A2p6	cell line	sgMsh2	9004009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	250	528	79	0.149621212	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A2656G:p.M886V	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.5606757	2	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10101364	12A2p6	cell line	sgMsh2	10101364	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	74	254	39	0.153543307	exonic	Fads2	synonymous SNV	Fads2:NM_019699:exon1:c.T66C:p.R22R	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.774917634	1	0.706758	AAC	synonymous	NA	NA	NA	NA
M7	chr19	10247941	12A2p6	cell line	sgMsh2	10247941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	96	31	2	0.064516129	exonic	Dagla	nonsynonymous SNV	Dagla:NM_198114:exon20:c.A2858G:p.K953R	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.756684278	1	0.5364064	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10503010	12A2p6	cell line	sgMsh2	10503010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	172	187	26	0.139037433	exonic	Sdhaf2	nonsynonymous SNV	Sdhaf2:NM_025333:exon4:c.A484C:p.K162Q	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.65184248	2	0.9982444	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10596385	12A2p6	cell line	sgMsh2	10596385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	302	49	6	0.12244898	exonic	Tkfc	synonymous SNV	Tkfc:NM_145496:exon7:c.T663C:p.H221H	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.282617019	3	1.11E-09	CAT	synonymous	NA	NA	NA	NA
M7	chr19	10646786	12A2p6	cell line	sgMsh2	10646786	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	60	0	0	NA	exonic	Vwce	nonsynonymous SNV	Vwce:NM_027913:exon8:c.T1040C:p.L347P	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.483183936	2	0.9830546	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10664259	12A2p6	cell line	sgMsh2	10664259	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	70	0	0	NA	exonic	Vwce	frameshift deletion	Vwce:NM_027913:exon20:c.2348delT:p.L784fs*0	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr19	10723153	12A2p6	cell line	sgMsh2	10723153	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	101	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon6:c.C986G:p.T329R	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	2	1	1	0.9993492	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10726376	12A2p6	cell line	sgMsh2	10726376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	206	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon3:c.A321C:p.Q107H	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.706542549	2	0.9898755	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	10940395	12A2p6	cell line	sgMsh2	10940395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	138	2	2	1	exonic	Ptgdr2	nonsynonymous SNV	Ptgdr2:NM_009962:exon3:c.T275A:p.V92E	19qA	chr19-6054831-10993457	6	5	1	0.9	4.102505121	NA	1	0.483183936	2	0.9999902	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	11283780	12A2p6	cell line	sgMsh2	11283780	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	223	0	0	NA	exonic	Ms4a5	frameshift deletion	Ms4a5:NM_183190:exon1:c.14delA:p.N5Mfs*45	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.656400819	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr19	11333263	12A2p6	cell line	sgMsh2	11333263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	163	0	0	NA	exonic	Ms4a7	nonsynonymous SNV	"Ms4a7:NM_001025610:exon2:c.T91C:p.Y31H,Ms4a7:NM_001276398:exon2:c.T190C:p.Y64H,Ms4a7:NM_027836:exon2:c.T91C:p.Y31H"	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.592584073	2	0.9998468	TAT	nonsynonymous	TATG	9	TATGTATGT	NA
M7	chr19	11557933	12A2p6	cell line	sgMsh2	11557933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	501	0	0	NA	exonic	Ms4a4d	nonsynonymous SNV	Ms4a4d:NM_025658:exon7:c.A594G:p.I198M	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.711100888	2	0.9999972	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	12210204	12A2p6	cell line	sgMsh2	12210204	T	C	SNV	Mutect2;MuSe;Vardict	3	0.144	268	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.T637C:p.L213L	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.656400819	2	0.9999701	CTT	synonymous	NA	NA	NA	NA
M7	chr19	12241028	12A2p6	cell line	sgMsh2	12241028	T	C	SNV	Mutect2;Vardict	2	0.019	348	0	0	NA	exonic	Olfr262	nonsynonymous SNV	Olfr262:NM_146688:exon1:c.A632G:p.N211S	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.086608441	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	12422509	12A2p6	cell line	sgMsh2	12422509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	273	0	0	NA	exonic	Olfr1441	synonymous SNV	Olfr1441:NM_146683:exon1:c.C199T:p.L67L	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.510533971	2	1.18E-09	TCT	synonymous	NA	NA	NA	NA
M7	chr19	12463289	12A2p6	cell line	sgMsh2	12463289	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	197	0	0	NA	exonic	Mpeg1	nonsynonymous SNV	"Mpeg1:NM_001374668:exon2:c.T2089G:p.L697V,Mpeg1:NM_010821:exon2:c.T2089G:p.L697V"	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.784034312	1	0.5503299	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	12778971	12A2p6	cell line	sgMsh2	12778971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	134	213	34	0.159624413	exonic	Zfp91	nonsynonymous SNV	Zfp91:NM_053009:exon3:c.A508G:p.T170A	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.802267668	1	0.7979901	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr19	13165429	12A2p6	cell line	sgMsh2	13165429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	345	0	0	NA	exonic	Olfr1461	synonymous SNV	Olfr1461:NM_146302:exon1:c.T414C:p.T138T	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.711100888	2	0.9997501	CTT	synonymous	NA	NA	NA	NA
M7	chr19	13190834	12A2p6	cell line	sgMsh2	13190834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	327	0	0	NA	exonic	Olfr1462	nonsynonymous SNV	Olfr1462:NM_146693:exon1:c.C166A:p.P56T	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.692867532	2	0.9999281	CCC	nonsynonymous	C	5	CCCCC	NA
M7	chr19	13364838	12A2p6	cell line	sgMsh2	13364838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	220	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T209G:p.F70C	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.743009261	2	0.932825	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	13445599	12A2p6	cell line	sgMsh2	13445599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	637	0	0	NA	exonic	Olfr1471	nonsynonymous SNV	Olfr1471:NM_207132:exon1:c.A586G:p.T196A	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	13453837	12A2p6	cell line	sgMsh2	13453837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	387	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.C679T:p.R227C	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.665517497	2	0.9999996	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	13454348	12A2p6	cell line	sgMsh2	13454348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	569	0	0	NA	exonic	Olfr1472	synonymous SNV	Olfr1472:NM_146690:exon1:c.T168G:p.P56P	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.670075836	2	1.41E-09	TAG	synonymous	NA	NA	NA	NA
M7	chr19	13633547	12A2p6	cell line	sgMsh2	13633547	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	286	0	0	NA	exonic	Olfr1489	synonymous SNV	Olfr1489:NM_146635:exon1:c.T435C:p.G145G	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.70198421	2	0.9993717	GTT	synonymous	NA	NA	NA	NA
M7	chr19	13838751	12A2p6	cell line	sgMsh2	13838751	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	264	0	0	NA	exonic	Olfr1501	nonsynonymous SNV	Olfr1501:NM_146633:exon1:c.C421A:p.L141M	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.556117361	2	1.52E-08	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr19	13919786	12A2p6	cell line	sgMsh2	13919786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	427	0	0	NA	exonic	Olfr1505	synonymous SNV	Olfr1505:NM_001011850:exon1:c.C765T:p.L255L	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.670075836	2	0.9999999	TCA	synonymous	NA	NA	NA	NA
M7	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	218	275	40	0.145454545	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.784034312	1	0.5130574	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr19	16641572	12A2p6	cell line	sgMsh2	16641572	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	147	61	4	0.06557377	exonic	Vps13a	frameshift deletion	Vps13a:NM_173028:exon63:c.8629delT:p.Y2877Mfs*19	19qA	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.843292719	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr19	16710305	12A2p6	cell line	sgMsh2	16710305	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.149	144	39	0	0	exonic	Vps13a	frameshift insertion	Vps13a:NM_173028:exon26:c.2777dupT:p.L926Ffs*13	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	NA	NA	TCA	frameshift	A	5	AAAAA	1
M7	chr19	16754360	12A2p6	cell line	sgMsh2	16754360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	190	60	14	0.233333333	exonic	Vps13a	nonsynonymous SNV	Vps13a:NM_173028:exon6:c.A387C:p.E129D	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9999958	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	16759981	12A2p6	cell line	sgMsh2	16759981	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	111	25	4	0.16	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon4:c.T243A:p.A81A	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.683750854	2	0.922465	CAG	synonymous	NA	NA	NA	NA
M7	chr19	18642183	12A2p6	cell line	sgMsh2	18642183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	142	33	7	0.212121212	exonic	Nmrk1	synonymous SNV	Nmrk1:NM_145497:exon7:c.A399G:p.V133V	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.5606757	2	0.999847	TAT	synonymous	NA	NA	NA	NA
M7	chr19	23350619	12A2p6	cell line	sgMsh2	23350619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	237	0	0	NA	exonic	Mamdc2	nonsynonymous SNV	Mamdc2:NM_174857:exon9:c.A1384G:p.K462E	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.834176041	1	0.968653	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	24111075	12A2p6	cell line	sgMsh2	24111075	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	285	266	3	0.011278195	exonic	Tjp2	nonsynonymous SNV	"Tjp2:NM_001198985:exon15:c.G2236A:p.D746N,Tjp2:NM_001360391:exon15:c.G2248A:p.D750N,Tjp2:NM_011597:exon15:c.G2167A:p.D723N,Tjp2:NM_001360392:exon16:c.G2167A:p.D723N,Tjp2:NM_001376368:exon16:c.G2167A:p.D723N"	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.127633493	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr19	24272399	12A2p6	cell line	sgMsh2	24272399	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	82	52	12	0.230769231	exonic	Fxn	nonsynonymous SNV	Fxn:NM_008044:exon3:c.A323C:p.E108A	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9980902	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr19	25171612	12A2p6	cell line	sgMsh2	25171612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	113	10	5	0.5	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon35:c.A4453G:p.T1485A	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9996705	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	25409129	12A2p6	cell line	sgMsh2	25409129	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	224	11	2	0.181818182	exonic	Kank1	synonymous SNV	"Kank1:NM_001348180:exon5:c.G81A:p.K27K,Kank1:NM_181404:exon5:c.G81A:p.K27K"	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.615375768	2	0.9999858	AGA	synonymous	AAAG	9	AAAGAAAGA	NA
M7	chr19	25409764	12A2p6	cell line	sgMsh2	25409764	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	125	11	2	0.181818182	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon5:c.T716C:p.V239A,Kank1:NM_181404:exon5:c.T716C:p.V239A"	19qB	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.578909056	2	0.9989591	GTC	nonsynonymous	TCCG	8	TCCGTCCG	NA
M7	chr19	26751894	12A2p6	cell line	sgMsh2	26751894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	110	101	19	0.188118812	exonic	Smarca2	nonsynonymous SNV	"Smarca2:NM_001347439:exon3:c.A164G:p.N55S,Smarca2:NM_026003:exon4:c.A44G:p.N15S,Smarca2:NM_011416:exon28:c.A4085G:p.N1362S"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.638167463	2	0.9805879	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	230	288	44	0.152777778	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.720217566	2	0.9875519	CTC	synonymous	NA	NA	NA	NA
M7	chr19	29311810	12A2p6	cell line	sgMsh2	29311810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	164	368	65	0.176630435	exonic	Jak2	nonsynonymous SNV	"Jak2:NM_001048177:exon24:c.C3361T:p.L1121F,Jak2:NM_008413:exon25:c.C3361T:p.L1121F"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.633609124	2	0.9989497	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr19	29373657	12A2p6	cell line	sgMsh2	29373657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	265	2	0	0	exonic	Cd274	nonsynonymous SNV	Cd274:NM_021893:exon3:c.T152G:p.L51R	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.505975632	2	1.26E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	29639959	12A2p6	cell line	sgMsh2	29639959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	202	214	25	0.11682243	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon3:c.T648C:p.C216C,Ermp1:NM_001362131:exon3:c.T648C:p.C216C"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.615375768	2	0.9999502	CAC	synonymous	NA	NA	NA	NA
M7	chr19	30087253	12A2p6	cell line	sgMsh2	30087253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	117	249	33	0.13253012	exonic	Uhrf2	synonymous SNV	Uhrf2:NM_144873:exon12:c.T1848C:p.V616V	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.779475973	1	0.6490394	TTG	synonymous	NA	NA	NA	NA
M7	chr19	31920904	12A2p6	cell line	sgMsh2	31920904	C	T	SNV	Mutect2;Vardict	2	0.017	323	0	0	NA	exonic	A1cf	synonymous SNV	"A1cf:NM_001081074:exon6:c.C687T:p.S229S,A1cf:NM_001365078:exon6:c.C687T:p.S229S"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.077491763	3	1	CCG	synonymous	NA	NA	NA	NA
M7	chr19	32159831	12A2p6	cell line	sgMsh2	32159831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	186	21	4	0.19047619	exonic	Sgms1	nonsynonymous SNV	"Sgms1:NM_001168526:exon2:c.G334A:p.G112R,Sgms1:NM_001168525:exon6:c.G334A:p.G112R,Sgms1:NM_001362423:exon6:c.G334A:p.G112R,Sgms1:NM_144792:exon6:c.G334A:p.G112R"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.761242617	2	0.7257411	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr19	34039172	12A2p6	cell line	sgMsh2	34039172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	134	0	0	NA	exonic	Lipk	nonsynonymous SNV	"Lipk:NM_001205349:exon7:c.A799G:p.S267G,Lipk:NM_172837:exon7:c.A784G:p.S262G"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9998999	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	34236304	12A2p6	cell line	sgMsh2	34236304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	297	172	26	0.151162791	exonic	Stambpl1	nonsynonymous SNV	"Stambpl1:NM_001360720:exon4:c.T434C:p.V145A,Stambpl1:NM_001360716:exon8:c.T932C:p.V311A,Stambpl1:NM_001360718:exon8:c.T932C:p.V311A,Stambpl1:NM_001360719:exon8:c.T932C:p.V311A,Stambpl1:NM_029682:exon8:c.T932C:p.V311A,Stambpl1:NM_001360717:exon9:c.T932C:p.V311A"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.724775905	2	0.9967163	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	34524751	12A2p6	cell line	sgMsh2	34524751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	201	124	8	0.064516129	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon2:c.T92C:p.V31A,Lipa:NM_021460:exon2:c.T92C:p.V31A"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.720217566	2	0.9739054	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	217	43	1	0.023255814	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	0.984601229	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M7	chr19	34629749	12A2p6	cell line	sgMsh2	34629749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	418	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon1:c.T11C:p.L4P,Ifit1bl2:NM_053217:exon2:c.T11C:p.L4P"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.660959158	2	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	34670785	12A2p6	cell line	sgMsh2	34670785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	202	0	0	NA	exonic	Slc16a12	nonsynonymous SNV	Slc16a12:NM_172838:exon7:c.T1307C:p.M436T	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.957251195	1	0.9999728	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	34950647	12A2p6	cell line	sgMsh2	34950647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	190	80	20	0.25	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon19:c.T3188C:p.L1063P,Kif20b:NM_183046:exon19:c.T3308C:p.L1103P"	19qC1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9999958	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	36601474	12A2p6	cell line	sgMsh2	36601474	A	-	Deletion	Strelka2;Vardict	2	0.1434	251	1	0	0	exonic	Hectd2	frameshift deletion	"Hectd2:NM_001163471:exon11:c.1134delA:p.I381Sfs*10,Hectd2:NM_172637:exon11:c.1131delA:p.I380Sfs*10"	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.653665816	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7	chr19	37550485	12A2p6	cell line	sgMsh2	37550485	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	33	63	7	0.111111111	exonic	Exoc6	synonymous SNV	Exoc6:NM_175353:exon1:c.T21G:p.A7A	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.788592651	1	0.8047191	CTC	synonymous	NA	NA	NA	NA
M7	chr19	37698433	12A2p6	cell line	sgMsh2	37698433	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	110	0	0	NA	exonic	Cyp26a1	nonsynonymous SNV	Cyp26a1:NM_007811:exon2:c.A332G:p.H111R	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.592584073	2	0.9955259	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	37954506	12A2p6	cell line	sgMsh2	37954506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	157	1186	162	0.136593592	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon22:c.A2123G:p.Q708R,Myof:NM_001302140:exon23:c.A2162G:p.Q721R"	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.496858954	2	0.9999973	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	38097293	12A2p6	cell line	sgMsh2	38097293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	133	16	3	0.1875	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T167C:p.L56P	19qC2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.683750854	2	0.9639319	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	38620561	12A2p6	cell line	sgMsh2	38620561	G	A	SNV	Mutect2;Vardict	2	0.024	226	151	4	0.026490066	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon2:c.G1313A:p.C438Y	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.109400137	3	1	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	38795525	12A2p6	cell line	sgMsh2	38795525	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	515	70	10	0.142857143	exonic	Noc3l	nonsynonymous SNV	Noc3l:NM_021315:exon16:c.T1738C:p.Y580H	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.752125939	2	0.9990182	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	39031345	12A2p6	cell line	sgMsh2	39031345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	124	0	0	NA	exonic	Cyp2c55	synonymous SNV	Cyp2c55:NM_028089:exon5:c.T726C:p.S242S	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.83873438	1	0.9386773	GTT	synonymous	NA	NA	NA	NA
M7	chr19	39087723	12A2p6	cell line	sgMsh2	39087723	A	G	SNV	Mutect2;MuSe;Vardict	3	0.124	306	4	0	0	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon7:c.A1118G:p.D373G	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.565234039	2	2.42E-09	GAC	nonsynonymous	CGTGA	10	CGTGACGTGA	NA
M7	chr19	39290827	12A2p6	cell line	sgMsh2	39290827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	300	0	0	NA	exonic	Cyp2c29	nonsynonymous SNV	Cyp2c29:NM_007815:exon2:c.T267G:p.D89E	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	9.14E-09	ATC	nonsynonymous	TGAT	8	TGATTGAT	NA
M7	chr19	40046198	12A2p6	cell line	sgMsh2	40046198	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	326	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon7:c.A1027C:p.S343R	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	2.86E-09	CTC	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M7	chr19	41223141	12A2p6	cell line	sgMsh2	41223141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	196	1228	380	0.309446254	exonic	Tm9sf3	nonsynonymous SNV	Tm9sf3:NM_133352:exon10:c.A1262G:p.Q421R	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.999997	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	41981112	12A2p6	cell line	sgMsh2	41981112	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	70	21	0	0	exonic	Mms19	nonsynonymous SNV	"Mms19:NM_001373946:exon1:c.T2G:p.M1R,Mms19:NM_028152:exon1:c.T2G:p.M1R"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.970926212	1	0.9931475	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	42039911	12A2p6	cell line	sgMsh2	42039911	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	132	1	0	0	exonic	Ankrd2	nonsynonymous SNV	Ankrd2:NM_020033:exon2:c.A149T:p.K50M	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.724775905	2	0.8385513	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	42414026	12A2p6	cell line	sgMsh2	42414026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	92	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon2:c.T124G:p.Y42D,Crtac1:NM_001356589:exon2:c.T142G:p.Y48D,Crtac1:NM_145123:exon2:c.T142G:p.Y48D"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.911667805	1	0.9881449	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	42762166	12A2p6	cell line	sgMsh2	42762166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	66	79	15	0.189873418	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon12:c.A1277G:p.Q426R,Hps1:NM_001346703:exon13:c.A1301G:p.Q434R,Hps1:NM_019424:exon13:c.A1277G:p.Q426R"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.660959158	2	0.7800177	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr19	42767263	12A2p6	cell line	sgMsh2	42767263	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.112	113	72	11	0.152777778	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon6:c.A523G:p.I175V,Hps1:NM_001346703:exon7:c.A523G:p.I175V,Hps1:NM_019424:exon7:c.A523G:p.I175V"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.510533971	2	0.99976	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr19	43491888	12A2p6	cell line	sgMsh2	43491888	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	52	0	0	NA	exonic	Cnnm1	synonymous SNV	"Cnnm1:NM_031396:exon9:c.C2649T:p.S883S,Cnnm1:NM_001373992:exon10:c.C2712T:p.S904S"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.784034312	1	0.7748805	CCC	synonymous	NA	NA	NA	NA
M7	chr19	43493730	12A2p6	cell line	sgMsh2	43493730	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	119	0	0	NA	exonic	Cnnm1	nonsynonymous SNV	"Cnnm1:NM_031396:exon10:c.A2695T:p.N899Y,Cnnm1:NM_001373992:exon11:c.A2758T:p.N920Y"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9997655	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr19	43717476	12A2p6	cell line	sgMsh2	43717476	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	98	21	4	0.19047619	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon8:c.T736G:p.S246A	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.761242617	1	0.5615715	CTC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M7	chr19	44059158	12A2p6	cell line	sgMsh2	44059158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	134	83	12	0.144578313	exonic	Erlin1	nonsynonymous SNV	"Erlin1:NM_145502:exon5:c.A323G:p.N108S,Erlin1:NM_001164359:exon6:c.A323G:p.N108S,Erlin1:NM_001164360:exon6:c.A323G:p.N108S"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.79315099	1	0.733516	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	44153684	12A2p6	cell line	sgMsh2	44153684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	157	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon9:c.T1634C:p.V545A	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.679192515	2	0.9876308	GAC	nonsynonymous	GAA	17	GAAGAAGACGAAGAAGA	NA
M7	chr19	45040226	12A2p6	cell line	sgMsh2	45040226	T	C	SNV	Mutect2;Vardict	2	0.053	79	1	0	0	exonic	Pdzd7	synonymous SNV	Pdzd7:NM_001195265:exon3:c.A477G:p.L159L	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.241591968	3	0.9997137	GTA	synonymous	NA	NA	NA	NA
M7	chr19	45049129	12A2p6	cell line	sgMsh2	45049129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	110	236	64	0.271186441	exonic	Sfxn3	nonsynonymous SNV	"Sfxn3:NM_001178012:exon2:c.T23G:p.I8S,Sfxn3:NM_001178013:exon2:c.T23G:p.I8S,Sfxn3:NM_001362381:exon2:c.T23G:p.I8S,Sfxn3:NM_053197:exon2:c.T23G:p.I8S"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9996093	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr19	45579743	12A2p6	cell line	sgMsh2	45579743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	72	39	7	0.179487179	exonic	Fbxw4	nonsynonymous SNV	Fbxw4:NM_013907:exon7:c.T881C:p.V294A	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9966369	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr19	45749141	12A2p6	cell line	sgMsh2	45749141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	83	23	9	0.391304348	exonic	Npm3	synonymous SNV	Npm3:NM_008723:exon2:c.T120C:p.G40G	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9981953	AAC	synonymous	NA	NA	NA	NA
M7	chr19	46004185	12A2p6	cell line	sgMsh2	46004185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	161	39	13	0.333333333	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A560G:p.H187R	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.670075836	2	0.9930819	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	46083586	12A2p6	cell line	sgMsh2	46083586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	206	262	58	0.221374046	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon11:c.T1811C:p.V604A,Nolc1:NM_001039352:exon11:c.T1817C:p.V606A,Nolc1:NM_001039353:exon11:c.T1814C:p.V605A,Nolc1:NM_053086:exon11:c.T1814C:p.V605A"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.724775905	2	0.9698784	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr19	46271825	12A2p6	cell line	sgMsh2	46271825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	167	102	7	0.068627451	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon26:c.A3331G:p.I1111V	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.774917634	2	0.5085635	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	46320954	12A2p6	cell line	sgMsh2	46320954	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	109	0	0	NA	exonic	Psd	synonymous SNV	"Psd:NM_001347454:exon7:c.C1566A:p.P522P,Psd:NM_028627:exon7:c.C1563A:p.P521P"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.610817429	2	0.9914525	GGG	synonymous	NA	NA	NA	NA
M7	chr19	47071000	12A2p6	cell line	sgMsh2	47071000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	195	32	3	0.09375	exonic	Taf5	synonymous SNV	Taf5:NM_177342:exon2:c.A582G:p.E194E	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.610817429	2	0.999943	AAG	synonymous	NA	NA	NA	NA
M7	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	259	49	10	0.204081633	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.756684278	2	0.9117208	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr19	47129189	12A2p6	cell line	sgMsh2	47129189	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	120	70	2	0.028571429	exonic	Pdcd11	frameshift deletion	Pdcd11:NM_011053:exon33:c.4976delA:p.N1660Tfs*8	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.743009261	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr19	47133166	12A2p6	cell line	sgMsh2	47133166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	111	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon3:c.G563A:p.G188E	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.715659227	2	0.8067425	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr19	47135722	12A2p6	cell line	sgMsh2	47135722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	142	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T182C:p.I61T	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.720217566	2	0.8894799	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	73	10	0.136986301	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9993113	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	189	176	26	0.147727273	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.633609124	2	0.9997108	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	47733582	12A2p6	cell line	sgMsh2	47733582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	237	1015	135	0.133004926	exonic	Sfr1	nonsynonymous SNV	Sfr1:NM_026377:exon3:c.A436G:p.S146G	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.715659227	2	0.9924238	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	50228253	12A2p6	cell line	sgMsh2	50228253	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	248	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon14:c.A1887T:p.P629P,Sorcs1:NM_001290356:exon14:c.A1887T:p.P629P,Sorcs1:NM_001360457:exon14:c.A1887T:p.P629P,Sorcs1:NM_021377:exon14:c.A1887T:p.P629P"	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.743009261	2	0.9597003	GTG	synonymous	NA	NA	NA	NA
M7	chr19	50232658	12A2p6	cell line	sgMsh2	50232658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	240	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon11:c.C1620T:p.I540I,Sorcs1:NM_001290356:exon11:c.C1620T:p.I540I,Sorcs1:NM_001360457:exon11:c.C1620T:p.I540I,Sorcs1:NM_021377:exon11:c.C1620T:p.I540I"	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9999998	TGA	synonymous	NA	NA	NA	NA
M7	chr19	50313026	12A2p6	cell line	sgMsh2	50313026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	110	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon5:c.C899T:p.A300V,Sorcs1:NM_001290356:exon5:c.C899T:p.A300V,Sorcs1:NM_001360457:exon5:c.C899T:p.A300V,Sorcs1:NM_021377:exon5:c.C899T:p.A300V"	19qD1	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9996093	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr19	55278125	12A2p6	cell line	sgMsh2	55278125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	219	809	127	0.156983931	exonic	Acsl5	synonymous SNV	Acsl5:NM_027976:exon5:c.A375G:p.K125K	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.743009261	2	0.9316078	AAG	synonymous	NA	NA	NA	NA
M7	chr19	56371846	12A2p6	cell line	sgMsh2	56371846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	79	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon12:c.A1048G:p.M350V,Nrap:NM_198059:exon13:c.A1291G:p.M431V,Nrap:NM_008733:exon14:c.A1396G:p.M466V"	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.642725802	2	0.09470051	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr19	56791006	12A2p6	cell line	sgMsh2	56791006	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	252	84	10	0.119047619	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon16:c.T2711A:p.I904N	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.537884005	2	9.94E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr19	56925081	12A2p6	cell line	sgMsh2	56925081	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	76	0	0	NA	exonic	Afap1l2	nonsynonymous SNV	"Afap1l2:NM_001177797:exon8:c.C868A:p.L290I,Afap1l2:NM_001177796:exon9:c.C922A:p.L308I,Afap1l2:NM_146102:exon10:c.C700A:p.L234I"	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.27805868	3	0.9956819	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr19	57685672	12A2p6	cell line	sgMsh2	57685672	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	102	95	12	0.126315789	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon12:c.T1938A:p.N646K	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9993851	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr19	58964462	12A2p6	cell line	sgMsh2	58964462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	117	0	0	NA	exonic	Eno4	nonsynonymous SNV	Eno4:NM_178689:exon11:c.A1432G:p.K478E	19qD2	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.3737838	2	0.6864328	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr19	59235176	12A2p6	cell line	sgMsh2	59235176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	131	0	0	NA	exonic	Kcnk18	nonsynonymous SNV	Kcnk18:NM_207261:exon3:c.A752G:p.K251R	19qD3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	2	1	1	0.9998813	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr19	59300985	12A2p6	cell line	sgMsh2	59300985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	240	161	25	0.155279503	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.C1982A:p.P661H	19qD3	chr19-11047697-61227351	6	4	2	0.9	4.102505121	NA	1	0.829617702	1	0.9581283	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	3329041	12A2p6	cell line	sgMsh2	3329041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	188	32	5	0.15625	exonic	Rpp38	stopgain	Rpp38:NM_001013376:exon2:c.A823T:p.K275X	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9897904	TTA	nonsynonymous	T	5	TTTTT	NA
M7	chr2	3498043	12A2p6	cell line	sgMsh2	3498043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	171	131	27	0.20610687	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon7:c.A572G:p.Y191C,Hspa14:NM_015765:exon8:c.A713G:p.Y238C"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9998934	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	4995798	12A2p6	cell line	sgMsh2	4995798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	144	58	16	0.275862069	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.T2081C:p.V694A,Mcm10:NM_027290:exon15:c.T2081C:p.V694A"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999258	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	5902496	12A2p6	cell line	sgMsh2	5902496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	101	3	1	0.333333333	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon15:c.T2408A:p.V803D	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	5973518	12A2p6	cell line	sgMsh2	5973518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	71	32	2	0.0625	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon4:c.T1192C:p.Y398H	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8545195	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	6100504	12A2p6	cell line	sgMsh2	6100504	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	23	28	2	0.071428571	exonic	Proser2	synonymous SNV	"Proser2:NM_001159657:exon4:c.A1248G:p.E416E,Proser2:NM_144883:exon4:c.A1248G:p.E416E"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9446947	GTT	synonymous	NA	NA	NA	NA
M7	chr2	10126177	12A2p6	cell line	sgMsh2	10126177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	195	149	43	0.288590604	exonic	Itih2	nonsynonymous SNV	Itih2:NM_010582:exon4:c.A348C:p.K116N	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999969	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	10245580	12A2p6	cell line	sgMsh2	10245580	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	177	42	4	0.095238095	exonic	Itih5	nonsynonymous SNV	Itih5:NM_172471:exon12:c.T2089G:p.F697V	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	10402049	12A2p6	cell line	sgMsh2	10402049	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	103	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon4:c.G158A:p.G53D,Sfmbt2:NM_001198809:exon4:c.G158A:p.G53D,Sfmbt2:NM_001369078:exon4:c.G158A:p.G53D,Sfmbt2:NM_177386:exon5:c.G158A:p.G53D"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	11226873	12A2p6	cell line	sgMsh2	11226873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	117	0	0	NA	exonic	Prkcq	synonymous SNV	Prkcq:NM_008859:exon2:c.A6G:p.S2S	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8843399	CAC	synonymous	NA	NA	NA	NA
M7	chr2	11751680	12A2p6	cell line	sgMsh2	11751680	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	187	130	6	0.046153846	exonic	Fbh1	synonymous SNV	"Fbh1:NM_001348234:exon14:c.A1962G:p.G654G,Fbh1:NM_001348235:exon14:c.A1962G:p.G654G,Fbh1:NM_001348236:exon14:c.A1962G:p.G654G,Fbh1:NM_001348237:exon14:c.A1962G:p.G654G,Fbh1:NM_015792:exon14:c.A2184G:p.G728G"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.214241934	3	1.02E-09	CTC	synonymous	CCAA	9	CCAACCAAC	NA
M7	chr2	13444324	12A2p6	cell line	sgMsh2	13444324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	128	36	9	0.25	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon21:c.A2939G:p.E980G	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9980051	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	13456616	12A2p6	cell line	sgMsh2	13456616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	156	52	15	0.288461538	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon16:c.T2099C:p.L700P	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.724775905	2	0.09628531	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	14238248	12A2p6	cell line	sgMsh2	14238248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	128	0	0	NA	exonic	Mrc1	nonsynonymous SNV	Mrc1:NM_008625:exon2:c.T184G:p.S62A	2qA2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9980051	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	16357184	12A2p6	cell line	sgMsh2	16357184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	75	0	0	NA	exonic	Plxdc2	nonsynonymous SNV	Plxdc2:NM_026162:exon1:c.T59C:p.F20S	2qA2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	TTT	nonsynonymous	T	5	TTTTT	NA
M7	chr2	20661917	12A2p6	cell line	sgMsh2	20661917	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	89	31	3	0.096774194	exonic	Etl4	nonsynonymous SNV	"Etl4:NM_001177630:exon3:c.C374T:p.S125F,Etl4:NM_001177631:exon3:c.C374T:p.S125F,Etl4:NM_001369134:exon3:c.C374T:p.S125F,Etl4:NM_001081006:exon4:c.C527T:p.S176F,Etl4:NM_029895:exon4:c.C374T:p.S125F,Etl4:NM_178059:exon4:c.C374T:p.S125F"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9909072	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	20859758	12A2p6	cell line	sgMsh2	20859758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	171	79	19	0.240506329	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon17:c.A3654C:p.K1218N,Arhgap21:NM_001128084:exon18:c.A3684C:p.K1228N"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr2	20881420	12A2p6	cell line	sgMsh2	20881420	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	204	66	5	0.075757576	exonic	Arhgap21	synonymous SNV	"Arhgap21:NM_001081364:exon7:c.A945G:p.S315S,Arhgap21:NM_001128084:exon8:c.A975G:p.S325S"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.173216883	3	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M7	chr2	21194492	12A2p6	cell line	sgMsh2	21194492	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	72	1	0	0	exonic	Enkur	frameshift deletion	Enkur:NM_027728:exon3:c.230delA:p.K77Sfs*13	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr2	22291860	12A2p6	cell line	sgMsh2	22291860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	102	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon7:c.T664A:p.W222R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	22399798	12A2p6	cell line	sgMsh2	22399798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	44	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon18:c.A1964G:p.Q655R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9777758	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	22423310	12A2p6	cell line	sgMsh2	22423310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	87	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon20:c.T2377G:p.L793V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.5120768	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	22826908	12A2p6	cell line	sgMsh2	22826908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	122	4	3	0.75	exonic	Apbb1ip	nonsynonymous SNV	Apbb1ip:NM_019456:exon5:c.A521G:p.K174R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998022	AAG	nonsynonymous	GAAG	8	GAAGGAAG	NA
M7	chr2	22895674	12A2p6	cell line	sgMsh2	22895674	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	40	4	0	0	exonic	Pdss1	nonsynonymous SNV	"Pdss1:NM_001355467:exon1:c.G44T:p.R15M,Pdss1:NM_019501:exon1:c.G44T:p.R15M"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9796905	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	23099671	12A2p6	cell line	sgMsh2	23099671	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	52	88	24	0.272727273	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon9:c.T942A:p.N314K,Acbd5:NM_001102436:exon10:c.T1161A:p.N387K,Acbd5:NM_001102437:exon10:c.T1272A:p.N424K,Acbd5:NM_001102438:exon10:c.T1269A:p.N423K,Acbd5:NM_001355641:exon10:c.T975A:p.N325K,Acbd5:NM_028793:exon10:c.T1164A:p.N388K,Acbd5:NM_001355637:exon11:c.T1305A:p.N435K,Acbd5:NM_001355638:exon11:c.T1302A:p.N434K,Acbd5:NM_001355639:exon11:c.T1194A:p.N398K"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	23110710	12A2p6	cell line	sgMsh2	23110710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	195	119	22	0.18487395	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon11:c.A1134G:p.I378M,Acbd5:NM_001102436:exon12:c.A1353G:p.I451M,Acbd5:NM_001102437:exon12:c.A1464G:p.I488M,Acbd5:NM_001102438:exon12:c.A1461G:p.I487M,Acbd5:NM_001355641:exon12:c.A1167G:p.I389M,Acbd5:NM_028793:exon12:c.A1356G:p.I452M,Acbd5:NM_001355637:exon13:c.A1497G:p.I499M,Acbd5:NM_001355638:exon13:c.A1494G:p.I498M,Acbd5:NM_001355639:exon13:c.A1386G:p.I462M"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.98813	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	23181050	12A2p6	cell line	sgMsh2	23181050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	245	427	107	0.25058548	exonic	Yme1l1	nonsynonymous SNV	Yme1l1:NM_013771:exon8:c.T797G:p.L266R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	23537589	12A2p6	cell line	sgMsh2	23537589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	85	61	9	0.147540984	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon6:c.A305G:p.N102S,Spopl:NM_029773:exon6:c.A530G:p.N177S,Spopl:NM_001165997:exon7:c.A305G:p.N102S"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9983886	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	24395019	12A2p6	cell line	sgMsh2	24395019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	70	13	3	0.230769231	exonic	Psd4	synonymous SNV	"Psd4:NM_001355232:exon2:c.A894G:p.V298V,Psd4:NM_177611:exon2:c.A894G:p.V298V,Psd4:NM_001355231:exon3:c.A894G:p.V298V"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9962344	TAC	synonymous	NA	NA	NA	NA
M7	chr2	25021954	12A2p6	cell line	sgMsh2	25021954	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	163	15	1	0.066666667	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon20:c.C2131T:p.L711L	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999807	ACT	synonymous	NA	NA	NA	NA
M7	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	57	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9921594	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	25224180	12A2p6	cell line	sgMsh2	25224180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	154	441	88	0.199546485	exonic	Tubb4b	nonsynonymous SNV	Tubb4b:NM_146116:exon2:c.A110G:p.H37R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9994827	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	25231500	12A2p6	cell line	sgMsh2	25231500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	98	0	0	NA	exonic	Slc34a3	nonsynonymous SNV	"Slc34a3:NM_080854:exon8:c.G764A:p.S255N,Slc34a3:NM_001362748:exon9:c.G584A:p.S195N"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr2	25249426	12A2p6	cell line	sgMsh2	25249426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	85	33	7	0.212121212	exonic	Ndor1	nonsynonymous SNV	"Ndor1:NM_001252541:exon5:c.A622G:p.T208A,Ndor1:NM_001082476:exon7:c.A823G:p.T275A,Ndor1:NM_001252542:exon7:c.A616G:p.T206A"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8439845	GTG	nonsynonymous	A	5	AAAAA	NA
M7	chr2	25566110	12A2p6	cell line	sgMsh2	25566110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	78	6	0	0	exonic	Mamdc4	synonymous SNV	Mamdc4:NM_001081199:exon19:c.A2283G:p.L761L	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.8804714	GTA	synonymous	NA	NA	NA	NA
M7	chr2	25617565	12A2p6	cell line	sgMsh2	25617565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	72	0	0	NA	exonic	Ccdc183	nonsynonymous SNV	Ccdc183:NM_029859:exon1:c.A40G:p.T14A	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	25898394	12A2p6	cell line	sgMsh2	25898394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	92	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon11:c.A1060G:p.M354V,Kcnt1:NM_001145403:exon12:c.A1042G:p.M348V,Kcnt1:NM_175462:exon12:c.A1102G:p.M368V"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.720217566	2	0.6868242	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	26364684	12A2p6	cell line	sgMsh2	26364684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	138	9	0	0	exonic	Snapc4	nonsynonymous SNV	"Snapc4:NM_172339:exon21:c.C3803T:p.A1268V,Snapc4:NM_001290419:exon22:c.C3533T:p.A1178V"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.945573	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	26376996	12A2p6	cell line	sgMsh2	26376996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	46	29	4	0.137931034	exonic	Snapc4	nonsynonymous SNV	Snapc4:NM_172339:exon4:c.A218C:p.D73A	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.724775905	1	0.6160477	GTC	nonsynonymous	TCC	8	TCCTCCTC	NA
M7	chr2	26460190	12A2p6	cell line	sgMsh2	26460190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	41	13	6	0.461538462	exonic	Notch1	nonsynonymous SNV	Notch1:NM_008714:exon34:c.T6937C:p.Y2313H	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9756582	TAC	nonsynonymous	CTGG	8	CTGGCTGG	NA
M7	chr2	26635919	12A2p6	cell line	sgMsh2	26635919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	107	8	1	0.125	exonic	Dipk1b	synonymous SNV	Dipk1b:NM_019833:exon5:c.T864C:p.G288G	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GTT	synonymous	NA	NA	NA	NA
M7	chr2	27071924	12A2p6	cell line	sgMsh2	27071924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	65	0	0	NA	exonic	Mymk	nonsynonymous SNV	Mymk:NM_025376:exon1:c.A92G:p.Y31C	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9793554	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	27928042	12A2p6	cell line	sgMsh2	27928042	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	69	17	0	0	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon3:c.A278T:p.E93V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	27929453	12A2p6	cell line	sgMsh2	27929453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	130	11	1	0.090909091	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon4:c.A566C:p.K189T	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9992261	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	27986752	12A2p6	cell line	sgMsh2	27986752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	169	22	2	0.090909091	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon29:c.A2462G:p.D821G	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	28450656	12A2p6	cell line	sgMsh2	28450656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	84	2	0	0	exonic	Ppp1r26	synonymous SNV	"Ppp1r26:NM_001005420:exon4:c.T297C:p.R99R,Ppp1r26:NM_001368159:exon4:c.T297C:p.R99R"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.8467782	GTG	synonymous	NA	NA	NA	NA
M7	chr2	28450778	12A2p6	cell line	sgMsh2	28450778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	85	1	0	0	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.A419G:p.Y140C,Ppp1r26:NM_001368159:exon4:c.A419G:p.Y140C"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9869183	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	28686765	12A2p6	cell line	sgMsh2	28686765	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	82	15	3	0.2	exonic	Tsc1	synonymous SNV	"Tsc1:NM_001289575:exon23:c.C3078T:p.S1026S,Tsc1:NM_001289576:exon23:c.C3060T:p.S1020S,Tsc1:NM_022887:exon23:c.C3075T:p.S1025S"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.7133277	GCT	synonymous	NA	NA	NA	NA
M7	chr2	28809675	12A2p6	cell line	sgMsh2	28809675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	76	0	0	NA	exonic	Ak8	synonymous SNV	Ak8:NM_001033874:exon12:c.T1137C:p.S379S	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8559458	GTG	synonymous	NA	NA	NA	NA
M7	chr2	29065312	12A2p6	cell line	sgMsh2	29065312	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	133	27	6	0.222222222	exonic	Ttf1	nonsynonymous SNV	Ttf1:NM_009442:exon2:c.A687C:p.K229N	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	29145418	12A2p6	cell line	sgMsh2	29145418	T	C	SNV	Mutect2;Vardict	2	0.045	95	75	3	0.04	exonic	Setx	synonymous SNV	Setx:NM_198033:exon10:c.T1914C:p.N638N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	0.9999976	ATT	synonymous	NA	NA	NA	NA
M7	chr2	29763417	12A2p6	cell line	sgMsh2	29763417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	217	0	0	NA	exonic	Gm13547	nonsynonymous SNV	Gm13547:NM_001177392:exon2:c.C266A:p.P89H	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999991	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	29869617	12A2p6	cell line	sgMsh2	29869617	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.167	29	1	0	0	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon1:c.T80C:p.L27P	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.761242617	1	0.7693464	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	29996132	12A2p6	cell line	sgMsh2	29996132	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	61	118	32	0.271186441	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177667:exon17:c.C2305T:p.L769F,Sptan1:NM_001177668:exon17:c.C2305T:p.L769F,Sptan1:NM_001309460:exon17:c.C2305T:p.L769F,Sptan1:NM_001369325:exon17:c.C2305T:p.L769F"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	30111304	12A2p6	cell line	sgMsh2	30111304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	22	30	6	0.2	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon3:c.A187G:p.T63A,Zer1:NM_178694:exon3:c.A187G:p.T63A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9455761	GTG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M7	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.582	68	60	31	0.516666667	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	2	1	1	0.9957838	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	31010194	12A2p6	cell line	sgMsh2	31010194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	50	26	10	0.384615385	exonic	Usp20	nonsynonymous SNV	Usp20:NM_028846:exon11:c.T719C:p.M240T	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	2	1	1	0.9883813	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	31392146	12A2p6	cell line	sgMsh2	31392146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	134	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon37:c.A5679G:p.E1893E	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.7475676	2	0.6886223	AAC	synonymous	NA	NA	NA	NA
M7	chr2	31675878	12A2p6	cell line	sgMsh2	31675878	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	120	35	9	0.257142857	exonic	Exosc2	nonsynonymous SNV	Exosc2:NM_144886:exon5:c.T400G:p.F134V	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	31976596	12A2p6	cell line	sgMsh2	31976596	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	71	30	7	0.233333333	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon2:c.T142A:p.Y48N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.7503699	GTA	nonsynonymous	GTATG	10	GTATGGTATG	NA
M7	chr2	31977810	12A2p6	cell line	sgMsh2	31977810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	214	56	12	0.214285714	exonic	Nup214	synonymous SNV	Nup214:NM_172268:exon3:c.T288C:p.H96H	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9999096	ATC	synonymous	NA	NA	NA	NA
M7	chr2	32033233	12A2p6	cell line	sgMsh2	32033233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	52	37	12	0.324324324	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon29:c.A3773G:p.Q1258R	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9520465	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	32047531	12A2p6	cell line	sgMsh2	32047531	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	57	37	10	0.27027027	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon33:c.G6016T:p.V2006L	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7819815	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	32673367	12A2p6	cell line	sgMsh2	32673367	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	70	0	0	NA	exonic	Eng	nonsynonymous SNV	"Eng:NM_001146348:exon7:c.A931G:p.T311A,Eng:NM_001146350:exon7:c.A934G:p.T312A,Eng:NM_007932:exon7:c.A934G:p.T312A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9962344	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	32709892	12A2p6	cell line	sgMsh2	32709892	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	59	201	55	0.273631841	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.T485A:p.V162D	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	32749328	12A2p6	cell line	sgMsh2	32749328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	45	11	1	0.090909091	exonic	Sh2d3c	synonymous SNV	"Sh2d3c:NM_001252547:exon6:c.A969G:p.P323P,Sh2d3c:NM_013781:exon7:c.A1425G:p.P475P"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.8942769	CAT	synonymous	CCATCA	13	CCATCACCATCAC	NA
M7	chr2	33104854	12A2p6	cell line	sgMsh2	33104854	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	92	11	1	0.090909091	exonic	Garnl3	nonsynonymous SNV	"Garnl3:NM_001355200:exon2:c.C262A:p.L88I,Garnl3:NM_001355201:exon2:c.C142A:p.L48I"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	35006105	12A2p6	cell line	sgMsh2	35006105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	108	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon28:c.T3665C:p.V1222A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	35088812	12A2p6	cell line	sgMsh2	35088812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	121	0	0	NA	exonic	AI182371	nonsynonymous SNV	"AI182371:NM_001243102:exon5:c.T539C:p.V180A,AI182371:NM_001243103:exon5:c.T536C:p.V179A,AI182371:NM_001379434:exon5:c.T539C:p.V180A,AI182371:NM_178885:exon5:c.T536C:p.V179A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	35385643	12A2p6	cell line	sgMsh2	35385643	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	103	0	0	NA	exonic	4930402F06Rik	nonsynonymous SNV	"4930402F06Rik:NM_001272040:exon3:c.A44T:p.Q15L,4930402F06Rik:NM_001080709:exon4:c.A137T:p.Q46L"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	35422190	12A2p6	cell line	sgMsh2	35422190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	121	165	33	0.2	exonic	Ggta1	nonsynonymous SNV	"Ggta1:NM_001145821:exon4:c.T175C:p.Y59H,Ggta1:NM_001308299:exon4:c.T175C:p.Y59H,Ggta1:NM_001308300:exon4:c.T175C:p.Y59H,Ggta1:NM_010283:exon4:c.T175C:p.Y59H"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9988635	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	36117859	12A2p6	cell line	sgMsh2	36117859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	121	94	29	0.308510638	exonic	Rbm18	nonsynonymous SNV	"Rbm18:NM_001355580:exon5:c.A322G:p.R108G,Rbm18:NM_001159635:exon6:c.A439G:p.R147G,Rbm18:NM_026434:exon6:c.A529G:p.R177G"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	CTT	nonsynonymous	T	5	TTTTT	NA
M7	chr2	36422142	12A2p6	cell line	sgMsh2	36422142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	358	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.T743C:p.V248A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	1.30E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	36422162	12A2p6	cell line	sgMsh2	36422162	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	360	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.A763T:p.I255F	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	1.27E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	36640867	12A2p6	cell line	sgMsh2	36640867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	350	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T827C:p.V276A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	4.08E-08	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	36640915	12A2p6	cell line	sgMsh2	36640915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	313	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T875C:p.L292P	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	4.89E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	36812348	12A2p6	cell line	sgMsh2	36812348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	167	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.T743C:p.V248A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.770359295	2	0.5644792	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	36813090	12A2p6	cell line	sgMsh2	36813090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	99	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.A1G:p.M1V	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	36890485	12A2p6	cell line	sgMsh2	36890485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	299	0	0	NA	exonic	Olfr353	nonsynonymous SNV	Olfr353:NM_146941:exon1:c.A362G:p.Y121C	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9911107	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	36907557	12A2p6	cell line	sgMsh2	36907557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	212	0	0	NA	exonic	Olfr354	nonsynonymous SNV	Olfr354:NM_146939:exon1:c.A610G:p.T204A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9996954	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	37005072	12A2p6	cell line	sgMsh2	37005072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	289	0	0	NA	exonic	Olfr358	nonsynonymous SNV	Olfr358:NM_207235:exon1:c.A541G:p.T181A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	1.62E-08	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	37069184	12A2p6	cell line	sgMsh2	37069184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	143	0	0	NA	exonic	Olfr360	nonsynonymous SNV	Olfr360:NM_146622:exon1:c.A878G:p.N293S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.996311	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	37085522	12A2p6	cell line	sgMsh2	37085522	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	235	0	0	NA	exonic	Olfr361	synonymous SNV	Olfr361:NM_146368:exon1:c.T225C:p.T75T	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.104841798	3	1	TAG	synonymous	NA	NA	NA	NA
M7	chr2	37085712	12A2p6	cell line	sgMsh2	37085712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	150	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T35C:p.F12S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999596	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	37399893	12A2p6	cell line	sgMsh2	37399893	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	149	77	0	0	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon8:c.A1021G:p.T341A,Rc3h2:NM_001290642:exon8:c.A1021G:p.T341A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.259825324	3	0.999999	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	37790466	12A2p6	cell line	sgMsh2	37790466	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	77	0	0	NA	exonic	Crb2	nonsynonymous SNV	Crb2:NM_001163566:exon7:c.T1405C:p.F469L	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9964048	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr2	37793478	12A2p6	cell line	sgMsh2	37793478	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	47	1	0	0	exonic	Crb2	synonymous SNV	Crb2:NM_001163566:exon10:c.T2991C:p.G997G	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9862553	GTG	synonymous	NA	NA	NA	NA
M7	chr2	37800703	12A2p6	cell line	sgMsh2	37800703	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	77	1	0	0	exonic	Dennd1a	nonsynonymous SNV	"Dennd1a:NM_001362978:exon20:c.A2168T:p.N723I,Dennd1a:NM_001362977:exon21:c.A2288T:p.N763I,Dennd1a:NM_146122:exon22:c.A2384T:p.N795I,Dennd1a:NM_001362973:exon23:c.A2513T:p.N838I"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9974654	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	39047613	12A2p6	cell line	sgMsh2	39047613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	63	47	11	0.234042553	exonic	Golga1	nonsynonymous SNV	"Golga1:NM_001290649:exon8:c.A640G:p.T214A,Golga1:NM_029793:exon9:c.A715G:p.T239A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	40601553	12A2p6	cell line	sgMsh2	40601553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	147	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon88:c.T13367C:p.L4456S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9840967	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	40677558	12A2p6	cell line	sgMsh2	40677558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	155	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon79:c.A12156C:p.I4052I	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9988529	CTA	synonymous	NA	NA	NA	NA
M7	chr2	40802974	12A2p6	cell line	sgMsh2	40802974	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	129	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon65:c.C10211T:p.T3404I	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9983822	GGT	nonsynonymous	TTCTTG	12	TTCTTGTTCTTG	NA
M7	chr2	43629042	12A2p6	cell line	sgMsh2	43629042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	92	0	0	NA	exonic	Kynu	synonymous SNV	"Kynu:NM_001289593:exon9:c.T822C:p.C274C,Kynu:NM_001289594:exon9:c.T822C:p.C274C,Kynu:NM_027552:exon9:c.T822C:p.C274C"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	GTT	synonymous	NA	NA	NA	NA
M7	chr2	44752203	12A2p6	cell line	sgMsh2	44752203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	115	13	2	0.153846154	exonic	Gtdc1	nonsynonymous SNV	"Gtdc1:NM_001362986:exon5:c.T365C:p.V122A,Gtdc1:NM_001362987:exon5:c.T365C:p.V122A,Gtdc1:NM_172662:exon5:c.T365C:p.V122A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9972739	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	48814780	12A2p6	cell line	sgMsh2	48814780	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	32	32	12	0.375	exonic	Acvr2a	synonymous SNV	Acvr2a:NM_007396:exon1:c.T9C:p.A3A	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.8834703	CTG	synonymous	GCT	8	GCTGCTGC	NA
M7	chr2	48917308	12A2p6	cell line	sgMsh2	48917308	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	68	176	7	0.039772727	exonic	Orc4	stopgain	"Orc4:NM_001355296:exon9:c.A610T:p.K204X,Orc4:NM_011958:exon9:c.A610T:p.K204X"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9957838	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	49256209	12A2p6	cell line	sgMsh2	49256209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	70	29	8	0.275862069	exonic	Mbd5	nonsynonymous SNV	"Mbd5:NM_001290656:exon4:c.A430G:p.T144A,Mbd5:NM_029924:exon11:c.A430G:p.T144A"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.5763026	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	52077106	12A2p6	cell line	sgMsh2	52077106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	270	45	9	0.2	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon5:c.A406G:p.M136V,Rif1:NM_001355415:exon5:c.A406G:p.M136V,Rif1:NM_175238:exon5:c.A406G:p.M136V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	4.57E-08	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	52105483	12A2p6	cell line	sgMsh2	52105483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	147	89	6	0.06741573	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon24:c.C2713T:p.L905F,Rif1:NM_001355415:exon24:c.C2692T:p.L898F,Rif1:NM_175238:exon24:c.C2713T:p.L905F"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999521	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	52116276	12A2p6	cell line	sgMsh2	52116276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	151	58	11	0.189655172	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon31:c.T6494C:p.I2165T,Rif1:NM_001355415:exon31:c.T6473C:p.I2158T,Rif1:NM_175238:exon31:c.T6494C:p.I2165T"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999381	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	52137428	12A2p6	cell line	sgMsh2	52137428	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	59	0	0	NA	exonic	Neb	frameshift deletion	Neb:NM_010889:exon157:c.21289delA:p.I7097Sfs*7	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr2	53191128	12A2p6	cell line	sgMsh2	53191128	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.125	43	72	27	0.375	exonic	Prpf40a	synonymous SNV	"Prpf40a:NM_001371015:exon1:c.A105G:p.Q35Q,Prpf40a:NM_001371016:exon1:c.A105G:p.Q35Q,Prpf40a:NM_018785:exon1:c.A105G:p.Q35Q"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.569792378	2	0.8057386	GTT	synonymous	GAGG	8	GAGGGAGG	NA
M7	chr2	55437642	12A2p6	cell line	sgMsh2	55437642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	exonic	Kcnj3	nonsynonymous SNV	"Kcnj3:NM_001304810:exon2:c.T442C:p.Y148H,Kcnj3:NM_008426:exon2:c.T442C:p.Y148H,Kcnj3:NM_001355118:exon3:c.T442C:p.Y148H"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9621076	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	58823588	12A2p6	cell line	sgMsh2	58823588	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	190	0	0	NA	exonic	Ccdc148	nonsynonymous SNV	"Ccdc148:NM_001362393:exon14:c.G1634T:p.R545M,Ccdc148:NM_001362394:exon14:c.G1415T:p.R472M,Ccdc148:NM_001001178:exon15:c.G1550T:p.R517M,Ccdc148:NM_001372501:exon15:c.G1766T:p.R589M"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999958	CCT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M7	chr2	59308409	12A2p6	cell line	sgMsh2	59308409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	137	68	17	0.25	exonic	Pkp4	synonymous SNV	"Pkp4:NM_001362992:exon6:c.A558G:p.S186S,Pkp4:NM_001362990:exon7:c.A996G:p.S332S,Pkp4:NM_001362991:exon7:c.A996G:p.S332S,Pkp4:NM_026361:exon7:c.A1002G:p.S334S,Pkp4:NM_175464:exon7:c.A1002G:p.S334S,Pkp4:NM_001362993:exon8:c.A558G:p.S186S,Pkp4:NM_001362994:exon8:c.A558G:p.S186S,Pkp4:NM_001362995:exon8:c.A558G:p.S186S,Pkp4:NM_001362996:exon8:c.A558G:p.S186S"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	CAT	synonymous	NA	NA	NA	NA
M7	chr2	59790783	12A2p6	cell line	sgMsh2	59790783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	196	101	12	0.118811881	exonic	Tanc1	synonymous SNV	"Tanc1:NM_001290659:exon8:c.T945C:p.S315S,Tanc1:NM_198294:exon9:c.T945C:p.S315S"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.999997	GTT	synonymous	NA	NA	NA	NA
M7	chr2	59924874	12A2p6	cell line	sgMsh2	59924874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	137	16	4	0.25	exonic	Baz2b	synonymous SNV	Baz2b:NM_001001182:exon21:c.T3009C:p.S1003S	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	CAG	synonymous	NA	NA	NA	NA
M7	chr2	60303594	12A2p6	cell line	sgMsh2	60303594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	115	17	3	0.176470588	exonic	Ly75	synonymous SNV	Ly75:NM_013825:exon32:c.A4686G:p.Q1562Q	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9919746	CTT	synonymous	NA	NA	NA	NA
M7	chr2	61764871	12A2p6	cell line	sgMsh2	61764871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	151	355	79	0.222535211	exonic	Psmd14	nonsynonymous SNV	Psmd14:NM_021526:exon7:c.T334C:p.Y112H	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.999526	GTA	nonsynonymous	GTTG	15	TGGTTGTTGGTTGGT	NA
M7	chr2	62211477	12A2p6	cell line	sgMsh2	62211477	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	100	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242378:exon4:c.T400A:p.W134R,Slc4a10:NM_001242379:exon4:c.T400A:p.W134R,Slc4a10:NM_001242380:exon4:c.T400A:p.W134R,Slc4a10:NM_001242381:exon4:c.T400A:p.W134R,Slc4a10:NM_001242382:exon4:c.T400A:p.W134R,Slc4a10:NM_001242383:exon4:c.T400A:p.W134R,Slc4a10:NM_001362671:exon4:c.T397A:p.W133R,Slc4a10:NM_001362672:exon4:c.T397A:p.W133R,Slc4a10:NM_001362673:exon4:c.T397A:p.W133R,Slc4a10:NM_001362674:exon4:c.T397A:p.W133R,Slc4a10:NM_001362675:exon4:c.T397A:p.W133R,Slc4a10:NM_001362676:exon4:c.T397A:p.W133R,Slc4a10:NM_033552:exon4:c.T400A:p.W134R"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	62313315	12A2p6	cell line	sgMsh2	62313315	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	270	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242379:exon23:c.G3103T:p.G1035C,Slc4a10:NM_001242381:exon23:c.G3100T:p.G1034C,Slc4a10:NM_001242383:exon23:c.G3100T:p.G1034C,Slc4a10:NM_001362673:exon23:c.G3100T:p.G1034C,Slc4a10:NM_001362674:exon23:c.G3100T:p.G1034C,Slc4a10:NM_001362676:exon23:c.G3100T:p.G1034C,Slc4a10:NM_033552:exon23:c.G3103T:p.G1035C,Slc4a10:NM_001242378:exon24:c.G3193T:p.G1065C,Slc4a10:NM_001242380:exon24:c.G3193T:p.G1065C,Slc4a10:NM_001242382:exon24:c.G3190T:p.G1064C,Slc4a10:NM_001362671:exon24:c.G3190T:p.G1064C,Slc4a10:NM_001362672:exon24:c.G3187T:p.G1063C,Slc4a10:NM_001362675:exon24:c.G3190T:p.G1064C"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	62478687	12A2p6	cell line	sgMsh2	62478687	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	140	0	0	NA	exonic	Gcg	nonsynonymous SNV	Gcg:NM_008100:exon3:c.A122G:p.H41R	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9972472	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	62611711	12A2p6	cell line	sgMsh2	62611711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	149	5	0	0	exonic	Ifih1	synonymous SNV	"Ifih1:NM_001164477:exon5:c.A1161G:p.S387S,Ifih1:NM_027835:exon6:c.A1308G:p.S436S"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999572	CTG	synonymous	CCAA	10	CCAACCAACC	NA
M7	chr2	62635163	12A2p6	cell line	sgMsh2	62635163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	115	3	1	0.333333333	exonic	Ifih1	nonsynonymous SNV	Ifih1:NM_027835:exon3:c.A662G:p.N221S	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr2	63979031	12A2p6	cell line	sgMsh2	63979031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	184	14	4	0.285714286	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A1894G:p.K632E,Fign:NM_001267846:exon4:c.A1861G:p.K621E,Fign:NM_001267847:exon4:c.A1861G:p.K621E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999941	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	63980136	12A2p6	cell line	sgMsh2	63980136	G	A	SNV	Mutect2;Vardict	2	0.044	115	3	0	0	exonic	Fign	synonymous SNV	"Fign:NM_021716:exon3:c.C789T:p.S263S,Fign:NM_001267846:exon4:c.C756T:p.S252S,Fign:NM_001267847:exon4:c.C756T:p.S252S"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.200566917	3	0.9999999	GGC	synonymous	NA	NA	NA	NA
M7	chr2	65497488	12A2p6	cell line	sgMsh2	65497488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	326	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon16:c.T2804C:p.I935T,Scn3a:NM_001355167:exon16:c.T2753C:p.I918T,Scn3a:NM_001355168:exon16:c.T2666C:p.I889T,Scn3a:NM_001355169:exon16:c.T2666C:p.I889T,Scn3a:NM_001355170:exon16:c.T2657C:p.I886T,Scn3a:NM_001355171:exon16:c.T899C:p.I300T,Scn3a:NM_018732:exon16:c.T2657C:p.I886T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	2.86E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	65717806	12A2p6	cell line	sgMsh2	65717806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	162	6	2	0.333333333	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346679:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346680:exon17:c.A3341G:p.D1114G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.738450922	2	0.8496723	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	65763800	12A2p6	cell line	sgMsh2	65763800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	331	4	1	0.25	exonic	Scn2a	synonymous SNV	"Scn2a:NM_001099298:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346679:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346680:exon27:c.C4992T:p.I1664I"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	2.40E-09	TCG	synonymous	NA	NA	NA	NA
M7	chr2	65763849	12A2p6	cell line	sgMsh2	65763849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	367	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346679:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346680:exon27:c.T5041C:p.S1681P"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	1.18E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	66231368	12A2p6	cell line	sgMsh2	66231368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	237	59	10	0.169491525	exonic	Ttc21b	synonymous SNV	"Ttc21b:NM_001047604:exon12:c.A1437G:p.S479S,Ttc21b:NM_001290669:exon12:c.A1437G:p.S479S"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
M7	chr2	66536237	12A2p6	cell line	sgMsh2	66536237	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	127	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon14:c.2201delA:p.K734Sfs*6,Scn9a:NM_001290675:exon14:c.2168delA:p.K723Sfs*6"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr2	66565105	12A2p6	cell line	sgMsh2	66565105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	63	2	0	0	exonic	Scn9a	synonymous SNV	"Scn9a:NM_001290674:exon5:c.T594C:p.F198F,Scn9a:NM_001290675:exon5:c.T594C:p.F198F"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.8900981	CAA	synonymous	A	5	AAAAA	NA
M7	chr2	66676137	12A2p6	cell line	sgMsh2	66676137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	112	0	0	NA	exonic	Scn7a	synonymous SNV	Scn7a:NM_009135:exon25:c.T4407C:p.P1469P	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.547000683	2	0.9991265	AAG	synonymous	NA	NA	NA	NA
M7	chr2	66689691	12A2p6	cell line	sgMsh2	66689691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	67	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon18:c.A2868G:p.I956M	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.6002761	ATA	nonsynonymous	AT	8	ATATATAT	NA
M7	chr2	67514993	12A2p6	cell line	sgMsh2	67514993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	121	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7577G:p.K2526R,Xirp2:NM_001083919:exon7:c.A7577G:p.K2526R"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	67516356	12A2p6	cell line	sgMsh2	67516356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	112	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A8940G:p.I2980M,Xirp2:NM_001083919:exon7:c.A8940G:p.I2980M"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9935377	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	69202618	12A2p6	cell line	sgMsh2	69202618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	124	140	30	0.214285714	exonic	Spc25	synonymous SNV	"Spc25:NM_025565:exon3:c.T162A:p.T54T,Spc25:NM_001199123:exon4:c.T306A:p.T102T,Spc25:NM_001199124:exon4:c.T306A:p.T102T,Spc25:NM_001305800:exon4:c.T306A:p.T102T"	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	CAG	synonymous	NA	NA	NA	NA
M7	chr2	69265544	12A2p6	cell line	sgMsh2	69265544	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	167	0	0	NA	exonic	Abcb11	synonymous SNV	"Abcb11:NM_021022:exon21:c.T2451C:p.G817G,Abcb11:NM_001363492:exon22:c.T2451C:p.G817G"	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.173216883	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
M7	chr2	69483852	12A2p6	cell line	sgMsh2	69483852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	53	4	0	0	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6534C:p.N2178N	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	TAT	synonymous	NA	NA	NA	NA
M7	chr2	69991634	12A2p6	cell line	sgMsh2	69991634	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	35	22	1	0.045454545	exonic	Ubr3	synonymous SNV	Ubr3:NM_001303033:exon28:c.C4239T:p.I1413I	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.973208	TCA	synonymous	NA	NA	NA	NA
M7	chr2	70476910	12A2p6	cell line	sgMsh2	70476910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	66	3	0	0	exonic	Sp5	nonsynonymous SNV	Sp5:NM_022435:exon2:c.T938C:p.L313P	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.7129831	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	70587168	12A2p6	cell line	sgMsh2	70587168	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	187	0	0	NA	exonic	Gad1	nonsynonymous SNV	Gad1:NM_008077:exon8:c.A794T:p.K265M	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	71366560	12A2p6	cell line	sgMsh2	71366560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	116	32	7	0.21875	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon2:c.T33C:p.G11G	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9987965	CAC	synonymous	NA	NA	NA	NA
M7	chr2	71421695	12A2p6	cell line	sgMsh2	71421695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	66	187	59	0.315508021	exonic	Hat1	nonsynonymous SNV	Hat1:NM_026115:exon8:c.T770C:p.V257A	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9952797	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	73568222	12A2p6	cell line	sgMsh2	73568222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	110	6	0	0	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon7:c.T872C:p.V291A	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996093	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	73570490	12A2p6	cell line	sgMsh2	73570490	A	G	SNV	Mutect2;Vardict	2	0.064	66	6	0	0	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon6:c.T695C:p.L232P	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.291733698	3	0.9790072	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	74657986	12A2p6	cell line	sgMsh2	74657986	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	27	0	0	NA	exonic	Evx2	synonymous SNV	Evx2:NM_007967:exon2:c.T489C:p.G163G	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	TAC	synonymous	NA	NA	NA	NA
M7	chr2	74876455	12A2p6	cell line	sgMsh2	74876455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	108	181	41	0.226519337	exonic	Mtx2	nonsynonymous SNV	Mtx2:NM_016804:exon10:c.G773A:p.G258D	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	75678572	12A2p6	cell line	sgMsh2	75678572	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	230	339	3	0.008849558	exonic	Nfe2l2	synonymous SNV	Nfe2l2:NM_010902:exon3:c.C318T:p.A106A	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1	GGG	synonymous	NA	NA	NA	NA
M7	chr2	75891847	12A2p6	cell line	sgMsh2	75891847	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	87	118	3	0.025423729	exonic	Agps	frameshift deletion	Agps:NM_172666:exon13:c.1380delA:p.K462Sfs*14	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr2	76076079	12A2p6	cell line	sgMsh2	76076079	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	129	0	0	NA	exonic	Pde11a	nonsynonymous SNV	Pde11a:NM_001081033:exon11:c.C1793G:p.A598G	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.264383663	3	0.9999879	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	76375434	12A2p6	cell line	sgMsh2	76375434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	118	49	7	0.142857143	exonic	Rbm45	nonsynonymous SNV	Rbm45:NM_153405:exon4:c.A629G:p.Q210R	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997518	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	76379058	12A2p6	cell line	sgMsh2	76379058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	100	87	26	0.298850575	exonic	Rbm45	synonymous SNV	Rbm45:NM_153405:exon8:c.A1215G:p.L405L	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	TAG	synonymous	NA	NA	NA	NA
M7	chr2	76591882	12A2p6	cell line	sgMsh2	76591882	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	86	22	5	0.227272727	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon22:c.A2382C:p.G794G,Osbpl6:NM_001290733:exon24:c.A2475C:p.G825G,Osbpl6:NM_145525:exon24:c.A2499C:p.G833G"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.09374493	GAC	synonymous	NA	NA	NA	NA
M7	chr2	76711137	12A2p6	cell line	sgMsh2	76711137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	162	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A76523G:p.Y25508C,Ttn:NM_011652:exon307:c.A96266G:p.Y32089C,Ttn:NM_001385708:exon344:c.A102098G:p.Y34033C"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999795	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	76713049	12A2p6	cell line	sgMsh2	76713049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A74611G:p.T24871A,Ttn:NM_011652:exon307:c.A94354G:p.T31452A,Ttn:NM_001385708:exon344:c.A100186G:p.T33396A"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9999637	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	76732118	12A2p6	cell line	sgMsh2	76732118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	192	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon160:c.61401delA:p.K20467Nfs*38,Ttn:NM_011652:exon281:c.81144delA:p.K27048Nfs*38,Ttn:NM_001385708:exon318:c.86976delA:p.K28992Nfs*38"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr2	76739135	12A2p6	cell line	sgMsh2	76739135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	163	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A56432G:p.K18811R,Ttn:NM_011652:exon275:c.A76175G:p.K25392R,Ttn:NM_001385708:exon312:c.A82007G:p.K27336R"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999807	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	76744270	12A2p6	cell line	sgMsh2	76744270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	240	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon154:c.A51297G:p.V17099V,Ttn:NM_011652:exon275:c.A71040G:p.V23680V,Ttn:NM_001385708:exon312:c.A76872G:p.V25624V"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	TTA	synonymous	NA	NA	NA	NA
M7	chr2	76768907	12A2p6	cell line	sgMsh2	76768907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	239	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon131:c.A32776C:p.N10926H,Ttn:NM_011652:exon252:c.A52519C:p.N17507H,Ttn:NM_001385708:exon289:c.A58351C:p.N19451H"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999997	TTT	nonsynonymous	T	5	TTTTT	NA
M7	chr2	76776268	12A2p6	cell line	sgMsh2	76776268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	221	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon118:c.A29316G:p.A9772A,Ttn:NM_011652:exon239:c.A49059G:p.A16353A,Ttn:NM_001385708:exon276:c.A54891G:p.A18297A"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999989	GTG	synonymous	NA	NA	NA	NA
M7	chr2	76778035	12A2p6	cell line	sgMsh2	76778035	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	135	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon116:c.28562delA:p.K9521Rfs*23,Ttn:NM_011652:exon237:c.48305delA:p.K16102Rfs*23,Ttn:NM_001385708:exon274:c.54137delA:p.K18046Rfs*23"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	TTCT	10	TTCTTTCTTT	-1
M7	chr2	76789931	12A2p6	cell line	sgMsh2	76789931	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	111	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon93:c.A22578C:p.G7526G,Ttn:NM_011652:exon214:c.A42321C:p.G14107G,Ttn:NM_001385708:exon251:c.A48153C:p.G16051G"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	CTC	synonymous	NA	NA	NA	NA
M7	chr2	76808646	12A2p6	cell line	sgMsh2	76808646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	132	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon66:c.A16710G:p.K5570K,Ttn:NM_011652:exon187:c.A36453G:p.K12151K,Ttn:NM_001385708:exon224:c.A42285G:p.K14095K"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	GTT	synonymous	NA	NA	NA	NA
M7	chr2	76810340	12A2p6	cell line	sgMsh2	76810340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	104	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.A16082G:p.K5361R,Ttn:NM_011652:exon184:c.A35825G:p.K11942R,Ttn:NM_001385708:exon221:c.A41657G:p.K13886R"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	76810518	12A2p6	cell line	sgMsh2	76810518	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	176	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.C15904A:p.L5302I,Ttn:NM_011652:exon184:c.C35647A:p.L11883I,Ttn:NM_001385708:exon221:c.C41479A:p.L13827I"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999908	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	76810937	12A2p6	cell line	sgMsh2	76810937	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	182	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon61:c.A15743C:p.K5248T,Ttn:NM_011652:exon182:c.A35486C:p.K11829T,Ttn:NM_001385708:exon219:c.A41318C:p.K13773T"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.09350608	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	76822458	12A2p6	cell line	sgMsh2	76822458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	146	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon166:c.A32832G:p.Q10944Q,Ttn:NM_001385708:exon203:c.A38664G:p.Q12888Q"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999335	GTT	synonymous	NA	NA	NA	NA
M7	chr2	76856849	12A2p6	cell line	sgMsh2	76856849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon123:c.A28392G:p.K9464K,Ttn:NM_001385708:exon125:c.A31449G:p.K10483K"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9511169	GTT	synonymous	T	5	TTTTT	NA
M7	chr2	76886037	12A2p6	cell line	sgMsh2	76886037	G	A	SNV	Mutect2;Vardict	2	0.046	109	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon80:c.C20367T:p.V6789V,Ttn:NM_001385708:exon82:c.C23424T:p.V7808V"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.209683595	3	0.9999995	AGA	synonymous	NA	NA	NA	NA
M7	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	151	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	77057992	12A2p6	cell line	sgMsh2	77057992	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	74	2	0	0	exonic	Ccdc141	synonymous SNV	Ccdc141:NM_001025576:exon10:c.A1428G:p.E476E	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.102505121	NA	1	0.337317088	3	0.8198924	TTT	synonymous	NA	NA	NA	NA
M7	chr2	82258044	12A2p6	cell line	sgMsh2	82258044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	255	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.A2216G:p.K739R	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.825059363	1	0.9469427	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	82979003	12A2p6	cell line	sgMsh2	82979003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	420	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.T5659C:p.L1887L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.528767327	2	1.00E-09	GTT	synonymous	NA	NA	NA	NA
M7	chr2	82983323	12A2p6	cell line	sgMsh2	82983323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	277	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.G9979T:p.A3327S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.597142412	2	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	82990519	12A2p6	cell line	sgMsh2	82990519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	496	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16589G:p.Q5530R	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.761242617	2	0.9948989	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	82992550	12A2p6	cell line	sgMsh2	82992550	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	225	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T18620G:p.L6207R	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.656400819	2	0.9997945	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	82993509	12A2p6	cell line	sgMsh2	82993509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	244	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A19579G:p.T6527A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.60625909	2	0.9999976	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	82998226	12A2p6	cell line	sgMsh2	82998226	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	274	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon18:c.A20360T:p.H6787L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.583467395	2	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	83001604	12A2p6	cell line	sgMsh2	83001604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	208	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon20:c.A20713G:p.K6905E	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.423925529	2	0.9999384	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	83803240	12A2p6	cell line	sgMsh2	83803240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	235	285	28	0.098245614	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3040T:p.M1014L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.592584073	2	0.9999984	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	83803275	12A2p6	cell line	sgMsh2	83803275	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	254	343	64	0.186588921	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3075C:p.E1025D	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.597142412	2	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	84453862	12A2p6	cell line	sgMsh2	84453862	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.111	312	67	0	0	exonic	Tfpi	frameshift deletion	"Tfpi:NM_001177319:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001177320:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001355271:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001355273:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_011576:exon4:c.245delG:p.G82Dfs*27"	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.505975632	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7	chr2	84612086	12A2p6	cell line	sgMsh2	84612086	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	225	529	0	0	exonic	Ctnnd1	frameshift deletion	"Ctnnd1:NM_001085449:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001355067:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001085453:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001355066:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001085448:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001085450:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355064:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355065:exon12:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_007615:exon12:c.1901delA:p.K634Sfs*47"	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr2	84849786	12A2p6	cell line	sgMsh2	84849786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	138	0	0	NA	exonic	Slc43a1	nonsynonymous SNV	"Slc43a1:NM_001083809:exon2:c.T353C:p.L118P,Slc43a1:NM_001081349:exon3:c.T404C:p.L135P,Slc43a1:NM_024497:exon3:c.T275C:p.L92P"	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	2	0.9941976	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	84950115	12A2p6	cell line	sgMsh2	84950115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	294	31	9	0.290322581	exonic	Slc43a3	nonsynonymous SNV	Slc43a3:NM_021398:exon9:c.A912G:p.I304M	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	2	0.9996711	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	85054346	12A2p6	cell line	sgMsh2	85054346	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	277	394	45	0.114213198	exonic	Tnks1bp1	synonymous SNV	Tnks1bp1:NM_001081260:exon4:c.T789C:p.P263P	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.884317771	1	0.9996087	CTA	synonymous	NA	NA	NA	NA
M7	chr2	85647893	12A2p6	cell line	sgMsh2	85647893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	464	0	0	NA	exonic	Olfr1002	stopgain	Olfr1002:NM_146573:exon1:c.C427T:p.Q143X	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.752125939	2	0.9977175	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	85754028	12A2p6	cell line	sgMsh2	85754028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	245	0	0	NA	exonic	Olfr1010	nonsynonymous SNV	Olfr1010:NM_207149:exon3:c.T658C:p.F220L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.715659227	2	0.9939036	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	85769995	12A2p6	cell line	sgMsh2	85769995	C	A	SNV	Mutect2;Vardict	2	0.013	407	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.C193A:p.L65I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.059258407	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	85799569	12A2p6	cell line	sgMsh2	85799569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	318	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A700G:p.M234V	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.802267668	1	0.7414752	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	85799973	12A2p6	cell line	sgMsh2	85799973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	249	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A296T:p.Q99L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	2	0.6984871	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	85800215	12A2p6	cell line	sgMsh2	85800215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	242	0	0	NA	exonic	Olfr1016	synonymous SNV	Olfr1016:NM_001011758:exon1:c.T54C:p.S18S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.633609124	2	0.9999812	CAG	synonymous	NA	NA	NA	NA
M7	chr2	85868829	12A2p6	cell line	sgMsh2	85868829	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.144	632	0	0	NA	exonic	Olfr1022	frameshift insertion	Olfr1022:NM_146589:exon1:c.237dupA:p.N80Kfs*31	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.656400819	NA	NA	CCA	frameshift	NA	NA	NA	1
M7	chr2	85869037	12A2p6	cell line	sgMsh2	85869037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	540	0	0	NA	exonic	Olfr1022	synonymous SNV	Olfr1022:NM_146589:exon1:c.A444G:p.S148S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.692867532	2	5.15E-08	CAT	synonymous	TCTCAT	12	TCTCATTCTCAT	NA
M7	chr2	85887101	12A2p6	cell line	sgMsh2	85887101	G	A	SNV	Mutect2;Vardict	2	0.018	673	0	0	NA	exonic	Olfr1023	synonymous SNV	Olfr1023:NM_146587:exon1:c.G300A:p.Q100Q	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.082050102	3	1	AGT	synonymous	NA	NA	NA	NA
M7	chr2	85887108	12A2p6	cell line	sgMsh2	85887108	C	A	SNV	Mutect2;Vardict	2	0.016	667	0	0	NA	exonic	Olfr1023	nonsynonymous SNV	Olfr1023:NM_146587:exon1:c.C307A:p.L103I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.072933424	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	85887399	12A2p6	cell line	sgMsh2	85887399	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	328	0	0	NA	exonic	Olfr1023	frameshift deletion	Olfr1023:NM_146587:exon1:c.598delT:p.F200Lfs*2	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.870642753	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7	chr2	85923475	12A2p6	cell line	sgMsh2	85923475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	420	0	0	NA	exonic	Olfr1026	nonsynonymous SNV	Olfr1026:NM_146584:exon1:c.T206C:p.V69A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.7475676	2	0.9973149	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	85992650	12A2p6	cell line	sgMsh2	85992650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	172	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A832G:p.T278A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.642725802	2	0.9988951	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	85992807	12A2p6	cell line	sgMsh2	85992807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	149	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A989G:p.Y330C	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.770359295	2	0.5145472	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86041629	12A2p6	cell line	sgMsh2	86041629	C	A	SNV	Mutect2;Vardict	2	0.016	688	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.C313A:p.L105I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.072933424	3	1	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86041816	12A2p6	cell line	sgMsh2	86041816	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.134	664	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G500A:p.C167Y	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.610817429	2	1	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86046756	12A2p6	cell line	sgMsh2	86046756	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	558	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.T273G:p.S91S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.660959158	2	1.14E-09	CTT	synonymous	NA	NA	NA	NA
M7	chr2	86047272	12A2p6	cell line	sgMsh2	86047272	G	A	SNV	Mutect2;Vardict	2	0.019	464	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.G789A:p.E263E	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.086608441	3	1	AGG	synonymous	NA	NA	NA	NA
M7	chr2	86084983	12A2p6	cell line	sgMsh2	86084983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	343	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A793G:p.S265G	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.774917634	2	0.8536948	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86085501	12A2p6	cell line	sgMsh2	86085501	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	124	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.T275C:p.I92T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.542442344	2	0.9997073	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86170923	12A2p6	cell line	sgMsh2	86170923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	199	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.A893C:p.K298T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.916226144	1	0.9996533	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86170996	12A2p6	cell line	sgMsh2	86170996	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	219	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G820A:p.A274T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	2	0.9995146	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	86198171	12A2p6	cell line	sgMsh2	86198171	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	256	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.C580A:p.L194I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.679192515	2	0.9997129	AGG	nonsynonymous	AGGT	8	AGGTAGGT	NA
M7	chr2	86217371	12A2p6	cell line	sgMsh2	86217371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	370	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.C338A:p.T113N	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	2	0.9999999	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86228439	12A2p6	cell line	sgMsh2	86228439	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	333	0	0	NA	exonic	Olfr1047	synonymous SNV	Olfr1047:NM_147012:exon1:c.C531T:p.F177F	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.711100888	2	0.9996473	AGA	synonymous	NA	NA	NA	NA
M7	chr2	86275949	12A2p6	cell line	sgMsh2	86275949	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	406	0	0	NA	exonic	Olfr1051	stopgain	Olfr1051:NM_207562:exon1:c.T537A:p.C179X	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.9344595	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	86332428	12A2p6	cell line	sgMsh2	86332428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	155	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T927A:p.N309K	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.720217566	2	0.9185997	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86332927	12A2p6	cell line	sgMsh2	86332927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	195	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T428C:p.V143A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	1	0.8865712	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	86347285	12A2p6	cell line	sgMsh2	86347285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	266	0	0	NA	exonic	Olfr1055	synonymous SNV	"Olfr1055:NM_001310551:exon1:c.T480C:p.I160I,Olfr1055:NM_147021:exon1:c.T480C:p.I160I"	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.752125939	2	0.9426711	TAA	synonymous	NA	NA	NA	NA
M7	chr2	86413272	12A2p6	cell line	sgMsh2	86413272	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	0	0	NA	exonic	Olfr1061	stopgain	Olfr1061:NM_207134:exon1:c.T779A:p.L260X	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.720217566	2	0.9878675	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	86413389	12A2p6	cell line	sgMsh2	86413389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	216	0	0	NA	exonic	Olfr1061	nonsynonymous SNV	Olfr1061:NM_207134:exon1:c.T662C:p.I221T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.619934107	2	0.99997	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86423263	12A2p6	cell line	sgMsh2	86423263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	512	0	0	NA	exonic	Olfr1062	stopgain	Olfr1062:NM_147078:exon1:c.C412T:p.R138X	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.733892583	2	0.9999347	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr2	86483115	12A2p6	cell line	sgMsh2	86483115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	197	0	0	NA	exonic	Olfr228	nonsynonymous SNV	Olfr228:NM_146405:exon1:c.C626A:p.T209N	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	2	0.9999338	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86508585	12A2p6	cell line	sgMsh2	86508585	A	G	SNV	Mutect2;Vardict	2	0.038	370	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.A125G:p.N42S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.173216883	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	86508904	12A2p6	cell line	sgMsh2	86508904	A	G	SNV	Mutect2;Vardict	2	0.026	240	0	0	NA	exonic	Olfr1076	synonymous SNV	Olfr1076:NM_146406:exon1:c.A444G:p.P148P	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.118516815	3	1	CAT	synonymous	NA	NA	NA	NA
M7	chr2	86509001	12A2p6	cell line	sgMsh2	86509001	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	303	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.G541T:p.G181C	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	2	0.999755	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	86806546	12A2p6	cell line	sgMsh2	86806546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	439	0	0	NA	exonic	Olfr141	nonsynonymous SNV	Olfr141:NM_181818:exon1:c.T452C:p.I151T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.683750854	2	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	86829277	12A2p6	cell line	sgMsh2	86829277	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	273	0	0	NA	exonic	Olfr1094	nonsynonymous SNV	Olfr1094:NM_146365:exon1:c.C524A:p.T175N	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.569792378	2	2.29E-08	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr2	86890262	12A2p6	cell line	sgMsh2	86890262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	262	0	0	NA	exonic	Olfr1097	synonymous SNV	Olfr1097:NM_146843:exon2:c.T912C:p.V304V	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	2	0.9990627	TAA	synonymous	NA	NA	NA	NA
M7	chr2	86923173	12A2p6	cell line	sgMsh2	86923173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	439	0	0	NA	exonic	Olfr1098	nonsynonymous SNV	Olfr1098:NM_146845:exon1:c.T358C:p.Y120H	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	1	0.9320332	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	87135616	12A2p6	cell line	sgMsh2	87135616	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.022	392	0	0	NA	exonic	Olfr1110	nonsynonymous SNV	Olfr1110:NM_146769:exon2:c.G704A:p.R235H	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.100283459	3	1	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr2	87212904	12A2p6	cell line	sgMsh2	87212904	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	293	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.A11T:p.K4I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.711100888	2	0.9988894	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	87252877	12A2p6	cell line	sgMsh2	87252877	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.106	226	0	0	NA	exonic	Olfr1115	frameshift insertion	Olfr1115:NM_146297:exon1:c.940dupG:p.A315Gfs*15	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.483183936	NA	NA	CAG	frameshift	NA	NA	NA	1
M7	chr2	87309299	12A2p6	cell line	sgMsh2	87309299	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	568	0	0	NA	exonic	Olfr1118	nonsynonymous SNV	Olfr1118:NM_207632:exon1:c.G509A:p.C170Y	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	2	0.9991225	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	87309464	12A2p6	cell line	sgMsh2	87309464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	502	0	0	NA	exonic	Olfr1118	nonsynonymous SNV	Olfr1118:NM_207632:exon1:c.T674C:p.M225T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.683750854	2	4.86E-08	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	87418428	12A2p6	cell line	sgMsh2	87418428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	239	0	0	NA	exonic	Olfr1123	nonsynonymous SNV	Olfr1123:NM_146350:exon1:c.C379T:p.L127F	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.660959158	2	0.9998486	CCT	nonsynonymous	CCT	9	CCTCCTCCT	NA
M7	chr2	87418564	12A2p6	cell line	sgMsh2	87418564	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	354	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.515delA:p.T173Hfs*34	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr2	87457588	12A2p6	cell line	sgMsh2	87457588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	412	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.T422C:p.V141A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.752125939	2	0.9946148	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	87489731	12A2p6	cell line	sgMsh2	87489731	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	161	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon3:c.A1217T:p.Q406L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.551559022	2	0.9999753	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	87491385	12A2p6	cell line	sgMsh2	87491385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	166	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.T305C:p.V102A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.3737838	2	0.6828471	AAC	nonsynonymous	T	5	TTTTT	NA
M7	chr2	87544785	12A2p6	cell line	sgMsh2	87544785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	293	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.G758A:p.G253E	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.537884005	2	1.34E-09	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	87575824	12A2p6	cell line	sgMsh2	87575824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	472	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.T739C:p.C247R	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.688309193	2	0.9999997	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	87628953	12A2p6	cell line	sgMsh2	87628953	C	T	SNV	Mutect2;MuSe;Vardict	3	0.076	489	0	0	NA	exonic	Olfr1131	synonymous SNV	Olfr1131:NM_146658:exon1:c.C489T:p.F163F	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.346433766	3	0.9999798	TCC	synonymous	NA	NA	NA	NA
M7	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.174	364	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.79315099	NA	NA	CAT	frameshift	NA	NA	NA	1
M7	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	249	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.583467395	2	0.9999997	AAT	synonymous	NA	NA	NA	NA
M7	chr2	87746294	12A2p6	cell line	sgMsh2	87746294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	261	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A97G:p.I33V	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	2	0.9999983	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	87802800	12A2p6	cell line	sgMsh2	87802800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	327	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.C410T:p.T137I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.715659227	2	0.9993492	ACA	nonsynonymous	AACA	8	AACAAACA	NA
M7	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	294	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.7475676	2	0.974915	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	87833305	12A2p6	cell line	sgMsh2	87833305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	275	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T265C:p.F89L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.70198421	2	0.9991127	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	87943158	12A2p6	cell line	sgMsh2	87943158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	158	0	0	NA	exonic	Olfr1155	nonsynonymous SNV	Olfr1155:NM_146643:exon1:c.T469C:p.C157R	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.679192515	2	0.9880881	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	87949574	12A2p6	cell line	sgMsh2	87949574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	251	0	0	NA	exonic	Olfr1156	nonsynonymous SNV	Olfr1156:NM_146817:exon1:c.T658C:p.F220L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	2	0.9898631	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	87961977	12A2p6	cell line	sgMsh2	87961977	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	207	0	0	NA	exonic	Olfr1157	nonsynonymous SNV	Olfr1157:NM_146849:exon2:c.T914A:p.V305E	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.487742276	2	1.77E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	277	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.784034312	2	0.5911012	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	88006235	12A2p6	cell line	sgMsh2	88006235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	502	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.T542C:p.V181A	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.633609124	2	1.03E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	88025305	12A2p6	cell line	sgMsh2	88025305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	244	0	0	NA	exonic	Olfr1161	synonymous SNV	Olfr1161:NM_146848:exon1:c.T582C:p.H194H	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.706542549	2	0.9967452	ATG	synonymous	NA	NA	NA	NA
M7	chr2	88070610	12A2p6	cell line	sgMsh2	88070610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	334	0	0	NA	exonic	Olfr1163	nonsynonymous SNV	Olfr1163:NM_146644:exon1:c.A771G:p.I257M	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.697425871	2	0.9999112	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	88185810	12A2p6	cell line	sgMsh2	88185810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	148	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.C932T:p.T311I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	2	0.9956505	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr2	88275040	12A2p6	cell line	sgMsh2	88275040	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	212	0	0	NA	exonic	Olfr1173	nonsynonymous SNV	Olfr1173:NM_207566:exon1:c.A8C:p.N3T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.533325666	2	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88339793	12A2p6	cell line	sgMsh2	88339793	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.022	333	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.C227T:p.T76I	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.100283459	3	1	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88339906	12A2p6	cell line	sgMsh2	88339906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	297	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.T340C:p.F114L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.825059363	1	0.9565556	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88402653	12A2p6	cell line	sgMsh2	88402653	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	211	0	0	NA	exonic	Olfr1179	frameshift deletion	Olfr1179:NM_146917:exon1:c.280delA:p.S94Afs*21	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.743009261	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr2	88412415	12A2p6	cell line	sgMsh2	88412415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	214	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.T242C:p.L81P	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.834176041	1	0.9628089	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	88412570	12A2p6	cell line	sgMsh2	88412570	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	189	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C87A:p.C29X	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.670075836	2	0.9977841	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	88423567	12A2p6	cell line	sgMsh2	88423567	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	291	0	0	NA	exonic	Olfr1181	nonsynonymous SNV	Olfr1181:NM_001011816:exon1:c.C457A:p.H153N	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	2	0.9999997	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	88446751	12A2p6	cell line	sgMsh2	88446751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	414	0	0	NA	exonic	Olfr1182	synonymous SNV	Olfr1182:NM_001011535:exon3:c.T186C:p.S62S	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.688309193	2	0.9999979	GAC	synonymous	NA	NA	NA	NA
M7	chr2	88461677	12A2p6	cell line	sgMsh2	88461677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	316	0	0	NA	exonic	Olfr1183	synonymous SNV	Olfr1183:NM_146529:exon1:c.T336C:p.L112L	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	2	0.9999919	TTA	synonymous	NA	NA	NA	NA
M7	chr2	88682960	12A2p6	cell line	sgMsh2	88682960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	180	0	0	NA	exonic	Olfr1195	synonymous SNV	Olfr1195:NM_146753:exon1:c.A771G:p.T257T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.70198421	2	0.9827754	GTG	synonymous	NA	NA	NA	NA
M7	chr2	88700603	12A2p6	cell line	sgMsh2	88700603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	437	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T725C:p.I242T	2qD	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.738450922	2	0.9993891	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88745996	12A2p6	cell line	sgMsh2	88745996	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	349	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.G891T:p.K297N	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.615375768	2	1.24E-08	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88746012	12A2p6	cell line	sgMsh2	88746012	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	366	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.A875C:p.K292T	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.51509231	2	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88756087	12A2p6	cell line	sgMsh2	88756087	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	296	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.T587G:p.L196R,Olfr1199:NM_146458:exon2:c.T587G:p.L196R"	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.674634175	2	0.9999581	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	88767954	12A2p6	cell line	sgMsh2	88767954	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	418	0	0	NA	exonic	Olfr1200	synonymous SNV	Olfr1200:NM_001005227:exon1:c.C360A:p.R120R	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.679192515	2	0.9999994	AGC	synonymous	NA	NA	NA	NA
M7	chr2	88831221	12A2p6	cell line	sgMsh2	88831221	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	384	0	0	NA	exonic	Olfr1205	nonsynonymous SNV	Olfr1205:NM_146896:exon2:c.G103A:p.G35R	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.633609124	2	1.33E-08	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	88852050	12A2p6	cell line	sgMsh2	88852050	T	C	SNV	Mutect2;Vardict	2	0.018	405	0	0	NA	exonic	Olfr1204	synonymous SNV	Olfr1204:NM_146463:exon1:c.T99C:p.Y33Y	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.082050102	3	1	ATG	synonymous	NA	NA	NA	NA
M7	chr2	88852525	12A2p6	cell line	sgMsh2	88852525	A	G	SNV	Mutect2;Vardict	2	0.02	379	0	0	NA	exonic	Olfr1204	nonsynonymous SNV	Olfr1204:NM_146463:exon1:c.A574G:p.I192V	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.09116678	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88896799	12A2p6	cell line	sgMsh2	88896799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	403	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.A797G:p.K266R	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.724775905	2	0.9997586	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	88929666	12A2p6	cell line	sgMsh2	88929666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	437	0	0	NA	exonic	Olfr1211	synonymous SNV	Olfr1211:NM_001011804:exon1:c.C648T:p.S216S	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.660959158	2	2.84E-08	AGG	synonymous	NA	NA	NA	NA
M7	chr2	88929956	12A2p6	cell line	sgMsh2	88929956	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	372	0	0	NA	exonic	Olfr1211	nonsynonymous SNV	Olfr1211:NM_001011804:exon1:c.G358A:p.D120N	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.729334244	2	0.9991447	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr2	88959354	12A2p6	cell line	sgMsh2	88959354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	202	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.C887T:p.A296V	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.524208988	2	0.9999998	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	88987741	12A2p6	cell line	sgMsh2	88987741	G	A	SNV	Mutect2;Vardict	2	0.026	281	0	0	NA	exonic	Olfr1214	nonsynonymous SNV	Olfr1214:NM_146897:exon1:c.C460T:p.H154Y	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.118516815	3	1	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	89055070	12A2p6	cell line	sgMsh2	89055070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	333	0	0	NA	exonic	Olfr1218	nonsynonymous SNV	Olfr1218:NM_146818:exon1:c.T355A:p.Y119N	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.815942685	1	0.9148333	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	89074481	12A2p6	cell line	sgMsh2	89074481	A	G	SNV	Mutect2;Vardict	2	0.018	534	0	0	NA	exonic	Olfr1219	synonymous SNV	Olfr1219:NM_146899:exon1:c.T609C:p.G203G	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.082050102	3	1	CAC	synonymous	NA	NA	NA	NA
M7	chr2	89097028	12A2p6	cell line	sgMsh2	89097028	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.123	235	0	0	NA	exonic	Olfr1220	frameshift deletion	Olfr1220:NM_146900:exon1:c.898delA:p.M300Cfs*17	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.5606757	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr2	89112330	12A2p6	cell line	sgMsh2	89112330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	402	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T181C:p.F61L	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.756684278	2	0.9891337	AAG	nonsynonymous	AAG	9	AAGAAGAAG	NA
M7	chr2	89112332	12A2p6	cell line	sgMsh2	89112332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	395	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T179C:p.F60S	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.519650649	2	1.00E-09	GAA	nonsynonymous	AAG	9	AAGAAGAAG	NA
M7	chr2	89193725	12A2p6	cell line	sgMsh2	89193725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	531	0	0	NA	exonic	Olfr1226	nonsynonymous SNV	Olfr1226:NM_146967:exon1:c.T308C:p.V103A	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.738450922	2	0.9999119	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	89193935	12A2p6	cell line	sgMsh2	89193935	T	C	SNV	Mutect2;Vardict	2	0.026	251	0	0	NA	exonic	Olfr1226	nonsynonymous SNV	Olfr1226:NM_146967:exon1:c.A98G:p.Y33C	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.118516815	3	1	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	89248982	12A2p6	cell line	sgMsh2	89248982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	437	0	0	NA	exonic	Olfr1228	synonymous SNV	Olfr1228:NM_146971:exon1:c.A711G:p.R237R	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.574350717	2	1.00E-09	CTC	synonymous	NA	NA	NA	NA
M7	chr2	89249319	12A2p6	cell line	sgMsh2	89249319	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	367	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.T374G:p.I125S	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.569792378	2	1.03E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	89303361	12A2p6	cell line	sgMsh2	89303361	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	134	0	0	NA	exonic	Olfr1231	nonsynonymous SNV	Olfr1231:NM_146454:exon1:c.T230C:p.V77A	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.528767327	2	0.9999224	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	89340236	12A2p6	cell line	sgMsh2	89340236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	250	0	0	NA	exonic	Olfr1233	nonsynonymous SNV	Olfr1233:NM_146972:exon2:c.T65C:p.L22P	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.610817429	2	0.9999977	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M7	chr2	89439637	12A2p6	cell line	sgMsh2	89439637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	313	0	0	NA	exonic	Olfr1240	nonsynonymous SNV	Olfr1240:NM_146808:exon1:c.T641C:p.V214A	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.647284141	2	0.9999983	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	89482893	12A2p6	cell line	sgMsh2	89482893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	379	0	0	NA	exonic	Olfr1241	nonsynonymous SNV	Olfr1241:NM_146455:exon1:c.G241A:p.V81I	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.487742276	2	1.00E-09	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr2	89493558	12A2p6	cell line	sgMsh2	89493558	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	300	0	0	NA	exonic	Olfr1242	synonymous SNV	Olfr1242:NM_146968:exon1:c.C753A:p.P251P	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.588025734	2	1.75E-08	AGG	synonymous	NA	NA	NA	NA
M7	chr2	89528088	12A2p6	cell line	sgMsh2	89528088	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	293	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.T321G:p.G107G	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.578909056	2	1.28E-08	CAC	synonymous	NA	NA	NA	NA
M7	chr2	89609883	12A2p6	cell line	sgMsh2	89609883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	529	0	0	NA	exonic	Olfr1247	nonsynonymous SNV	Olfr1247:NM_146966:exon1:c.C218A:p.T73N	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.665517497	2	2.02E-09	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	89657438	12A2p6	cell line	sgMsh2	89657438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	260	0	0	NA	exonic	Olfr1250	nonsynonymous SNV	Olfr1250:NM_146965:exon1:c.T2C:p.M1T	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.65184248	2	0.9999699	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	89666959	12A2p6	cell line	sgMsh2	89666959	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.025	436	0	0	NA	exonic	Olfr1251	nonsynonymous SNV	Olfr1251:NM_001011529:exon1:c.T926C:p.I309T	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.113958476	3	1	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	89667270	12A2p6	cell line	sgMsh2	89667270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	318	0	0	NA	exonic	Olfr1251	synonymous SNV	Olfr1251:NM_001011529:exon1:c.T615C:p.C205C	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.820501024	1	0.9409337	TAC	synonymous	NA	NA	NA	NA
M7	chr2	89788829	12A2p6	cell line	sgMsh2	89788829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	267	0	0	NA	exonic	Olfr1254	synonymous SNV	Olfr1254:NM_146476:exon1:c.T522C:p.H174H	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.802267668	1	0.7581166	AAT	synonymous	NA	NA	NA	NA
M7	chr2	89977920	12A2p6	cell line	sgMsh2	89977920	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	302	0	0	NA	exonic	Olfr1260	synonymous SNV	Olfr1260:NM_146981:exon1:c.C141T:p.V47V	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.770359295	2	0.8542124	TCA	synonymous	NA	NA	NA	NA
M7	chr2	90002726	12A2p6	cell line	sgMsh2	90002726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	520	0	0	NA	exonic	Olfr1262	nonsynonymous SNV	Olfr1262:NM_146974:exon1:c.A319G:p.I107V	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.711100888	2	0.9999984	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	90002955	12A2p6	cell line	sgMsh2	90002955	C	T	SNV	Mutect2;Vardict	2	0.019	326	0	0	NA	exonic	Olfr1262	nonsynonymous SNV	Olfr1262:NM_146974:exon1:c.C548T:p.A183V	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.086608441	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	90139121	12A2p6	cell line	sgMsh2	90139121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	340	0	0	NA	exonic	Olfr32	nonsynonymous SNV	Olfr32:NM_010980:exon5:c.T17G:p.V6G	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.83873438	1	0.9908221	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	90149482	12A2p6	cell line	sgMsh2	90149482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	335	0	0	NA	exonic	Olfr1270	nonsynonymous SNV	Olfr1270:NM_146985:exon1:c.T523C:p.Y175H	2qE1	chr2-82235500-90451144	6	NA	NA	0.9	4.102505121	NA	NA	0.688309193	2	0.9999652	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	91063372	12A2p6	cell line	sgMsh2	91063372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	144	37	5	0.135135135	exonic	Slc39a13	synonymous SNV	"Slc39a13:NM_001290765:exon8:c.A897G:p.G299G,Slc39a13:NM_026721:exon8:c.A858G:p.G286G"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.610817429	2	0.9988829	CTC	synonymous	NA	NA	NA	NA
M7	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	358	71	17	0.23943662	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	1	1	1.30E-09	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	91167572	12A2p6	cell line	sgMsh2	91167572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	49	47	4	0.085106383	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon11:c.A2110G:p.T704A,Madd:NM_001177719:exon12:c.A2110G:p.T704A,Madd:NM_145527:exon12:c.A2110G:p.T704A"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.743009261	1	0.6599421	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	91167871	12A2p6	cell line	sgMsh2	91167871	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	231	66	13	0.196969697	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon10:c.T1903G:p.S635A,Madd:NM_001177719:exon11:c.T1903G:p.S635A,Madd:NM_145527:exon11:c.T1903G:p.S635A"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.65184248	2	0.999885	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	91263843	12A2p6	cell line	sgMsh2	91263843	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	120	110	20	0.181818182	exonic	Pacsin3	stopgain	"Pacsin3:NM_001289677:exon9:c.T1116A:p.Y372X,Pacsin3:NM_001289678:exon10:c.T1116A:p.Y372X,Pacsin3:NM_028733:exon10:c.T1116A:p.Y372X,Pacsin3:NM_030880:exon10:c.T1116A:p.Y372X"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.569792378	2	0.9989429	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	91265583	12A2p6	cell line	sgMsh2	91265583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	230	102	12	0.117647059	exonic	Arfgap2	synonymous SNV	"Arfgap2:NM_001166024:exon2:c.T84C:p.D28D,Arfgap2:NM_023854:exon2:c.T84C:p.D28D"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.820501024	1	0.9203306	ATT	synonymous	NA	NA	NA	NA
M7	chr2	91278916	12A2p6	cell line	sgMsh2	91278916	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	83	61	13	0.213114754	exonic	1110051M20Rik	nonsynonymous SNV	1110051M20Rik:NM_175123:exon9:c.C863T:p.T288I	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	0.966367873	1	0.9958896	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	234	44	6	0.136363636	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	2	0.88887611	1	0.9992485	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	91506011	12A2p6	cell line	sgMsh2	91506011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	362	1	0	0	exonic	Lrp4	synonymous SNV	Lrp4:NM_172668:exon36:c.G5166A:p.L1722L	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.547000683	2	1.00E-09	TGC	synonymous	NA	NA	NA	NA
M7	chr2	91564413	12A2p6	cell line	sgMsh2	91564413	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.139	232	182	1	0.005494505	exonic	Ckap5	frameshift deletion	"Ckap5:NM_029437:exon11:c.1432delT:p.L479fs*0,Ckap5:NM_001165989:exon12:c.1432delT:p.L479fs*0"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.633609124	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr2	91606329	12A2p6	cell line	sgMsh2	91606329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	258	168	26	0.154761905	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.G4773T:p.Q1591H,Ckap5:NM_001165989:exon36:c.G4773T:p.Q1591H"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	2	0.9879456	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	91606343	12A2p6	cell line	sgMsh2	91606343	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	307	173	22	0.12716763	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.A4787T:p.Y1596F,Ckap5:NM_001165989:exon36:c.A4787T:p.Y1596F"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.729334244	2	0.9961208	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	91615851	12A2p6	cell line	sgMsh2	91615851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	171	215	30	0.139534884	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon40:c.A5518G:p.I1840V,Ckap5:NM_001165989:exon41:c.A5518G:p.I1840V"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.7475676	2	0.8110028	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	91668289	12A2p6	cell line	sgMsh2	91668289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	278	359	55	0.153203343	exonic	Arhgap1	nonsynonymous SNV	"Arhgap1:NM_001145902:exon5:c.T530C:p.L177P,Arhgap1:NM_146124:exon5:c.T410C:p.L137P,Arhgap1:NM_001359970:exon6:c.T410C:p.L137P"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.665517497	2	0.9999597	CTC	nonsynonymous	CCCT	9	CCCTCCCTC	NA
M7	chr2	91720390	12A2p6	cell line	sgMsh2	91720390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	274	40	10	0.25	exonic	Harbi1	nonsynonymous SNV	"Harbi1:NM_001356518:exon3:c.C707T:p.T236I,Harbi1:NM_178724:exon3:c.C707T:p.T236I"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.784034312	2	0.5859202	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr2	92953470	12A2p6	cell line	sgMsh2	92953470	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	129	0	0	NA	exonic	Syt13	nonsynonymous SNV	Syt13:NM_030725:exon6:c.T1084G:p.F362V	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.528767327	2	0.9998827	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	93668662	12A2p6	cell line	sgMsh2	93668662	G	A	SNV	Mutect2;Vardict	2	0.055	81	0	0	NA	exonic	Alx4	synonymous SNV	Alx4:NM_007442:exon2:c.G738A:p.V246V	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.250708646	3	0.9995704	TGC	synonymous	NA	NA	NA	NA
M7	chr2	93677384	12A2p6	cell line	sgMsh2	93677384	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	51	0	0	NA	exonic	Alx4	synonymous SNV	Alx4:NM_007442:exon4:c.T1023A:p.S341S	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.770359295	1	0.7382661	CTG	synonymous	NA	NA	NA	NA
M7	chr2	94362443	12A2p6	cell line	sgMsh2	94362443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	122	57	1	0.01754386	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon15:c.A1961G:p.Q654R,Ttc17:NM_001355691:exon15:c.A1961G:p.Q654R,Ttc17:NM_183106:exon15:c.A1961G:p.Q654R"	2qE1	chr2-90451764-94430128	7	5	2	0.9	4.102505121	NA	1	0.433042207	2	0.9990647	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	97629518	12A2p6	cell line	sgMsh2	97629518	T	-	Deletion	Strelka2;Vardict	2	0.178	118	0	0	NA	exonic	Lrrc4c	frameshift deletion	"Lrrc4c:NM_001289744:exon2:c.488delT:p.I163Tfs*16,Lrrc4c:NM_178725:exon3:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363049:exon4:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289743:exon7:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289742:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363048:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363047:exon9:c.488delT:p.I163Tfs*16"	2qE1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.811384346	NA	NA	ATC	frameshift	NA	NA	NA	-1
M7	chr2	101734693	12A2p6	cell line	sgMsh2	101734693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	45	3	1	0.333333333	exonic	Prr5l	nonsynonymous SNV	"Prr5l:NM_001083810:exon7:c.T497C:p.V166A,Prr5l:NM_001355625:exon7:c.T497C:p.V166A,Prr5l:NM_175181:exon7:c.T497C:p.V166A,Prr5l:NM_001110849:exon8:c.T497C:p.V166A"	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9428062	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	103082989	12A2p6	cell line	sgMsh2	103082989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	114	54	14	0.259259259	exonic	Apip	nonsynonymous SNV	"Apip:NM_001355473:exon2:c.T89C:p.L30P,Apip:NM_019735:exon2:c.T89C:p.L30P"	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	103460282	12A2p6	cell line	sgMsh2	103460282	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	55	148	20	0.135135135	exonic	Cat	nonsynonymous SNV	Cat:NM_009804:exon10:c.T1286C:p.V429A	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	103783163	12A2p6	cell line	sgMsh2	103783163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	223	572	163	0.284965035	exonic	Caprin1	nonsynonymous SNV	"Caprin1:NM_001111289:exon2:c.A253G:p.R85G,Caprin1:NM_001111290:exon2:c.A253G:p.R85G,Caprin1:NM_001111292:exon2:c.A253G:p.R85G,Caprin1:NM_001111291:exon3:c.A253G:p.R85G,Caprin1:NM_016739:exon3:c.A253G:p.R85G"	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9967562	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	104723147	12A2p6	cell line	sgMsh2	104723147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	361	74	18	0.243243243	exonic	Depdc7	synonymous SNV	Depdc7:NM_144804:exon7:c.A1155G:p.V385V	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	1.26E-09	CTA	synonymous	NA	NA	NA	NA
M7	chr2	106351587	12A2p6	cell line	sgMsh2	106351587	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	exonic	Dcdc5	synonymous SNV	Dcdc5:NM_177844:exon11:c.G540A:p.E180E	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9919227	AGG	synonymous	NA	NA	NA	NA
M7	chr2	106867050	12A2p6	cell line	sgMsh2	106867050	A	C	SNV	Mutect2;Vardict	2	0.048	120	0	0	NA	exonic	Mpped2	nonsynonymous SNV	"Mpped2:NM_001356555:exon6:c.A491C:p.N164T,Mpped2:NM_001143683:exon7:c.A869C:p.N290T,Mpped2:NM_001356554:exon7:c.A869C:p.N290T,Mpped2:NM_029837:exon7:c.A869C:p.N290T"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.218800273	3	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	110265593	12A2p6	cell line	sgMsh2	110265593	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	133	0	0	NA	exonic	Bbox1	nonsynonymous SNV	Bbox1:NM_130452:exon7:c.A1025T:p.N342I	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9998643	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	110616679	12A2p6	cell line	sgMsh2	110616679	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	92	0	0	NA	exonic	Slc5a12	frameshift deletion	"Slc5a12:NM_001003915:exon5:c.531delT:p.L178fs*0,Slc5a12:NM_001177624:exon5:c.531delT:p.L178fs*0"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	GTT	frameshift	G	6	GGGGGG	-1
M7	chr2	111105990	12A2p6	cell line	sgMsh2	111105990	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	60	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon50:c.3629delA:p.N1210Ifs*31	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr2	111134225	12A2p6	cell line	sgMsh2	111134225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	172	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon38:c.A2819G:p.N940S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9995901	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	111170296	12A2p6	cell line	sgMsh2	111170296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	133	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon20:c.G1693T:p.A565S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	111190394	12A2p6	cell line	sgMsh2	111190394	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.26	121	0	0	NA	exonic	A26c3	frameshift insertion	A26c3:NM_001378593:exon17:c.1483dupT:p.S495Ffs*1	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M7	chr2	111214591	12A2p6	cell line	sgMsh2	111214591	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	181	0	0	NA	exonic	A26c3	nonsynonymous SNV	"A26c3:NM_001378593:exon8:c.A938G:p.D313G,A26c3:NM_026248:exon8:c.A938G:p.D313G"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.196008578	3	1.00E-09	ATC	nonsynonymous	TCA	9	TCATCATCA	NA
M7	chr2	111257346	12A2p6	cell line	sgMsh2	111257346	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	268	0	0	NA	exonic	Olfr1276	nonsynonymous SNV	Olfr1276:NM_146395:exon1:c.C230T:p.T77I	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.145866849	3	1	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr2	111306616	12A2p6	cell line	sgMsh2	111306616	G	T	SNV	Mutect2;Vardict	2	0.027	318	0	0	NA	exonic	Olfr1279	nonsynonymous SNV	Olfr1279:NM_146393:exon1:c.G416T:p.S139I	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	111329077	12A2p6	cell line	sgMsh2	111329077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	388	0	0	NA	exonic	Olfr1281	synonymous SNV	Olfr1281:NM_001005568:exon1:c.T657A:p.T219T	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9999992	CTT	synonymous	CTTATA	12	CTTATACTTATA	NA
M7	chr2	111369267	12A2p6	cell line	sgMsh2	111369267	A	G	SNV	Mutect2;Vardict	2	0.024	481	0	0	NA	exonic	Olfr1283	nonsynonymous SNV	Olfr1283:NM_207236:exon1:c.A634G:p.I212V	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.109400137	3	1	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	111409289	12A2p6	cell line	sgMsh2	111409289	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	209	0	0	NA	exonic	Olfr1285	nonsynonymous SNV	Olfr1285:NM_001370925:exon1:c.A786G:p.I262M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999986	TAA	nonsynonymous	A	5	AAAAA	NA
M7	chr2	111449611	12A2p6	cell line	sgMsh2	111449611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	641	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.T470C:p.M157T	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	111489844	12A2p6	cell line	sgMsh2	111489844	G	T	SNV	Mutect2;Vardict	2	0.018	420	0	0	NA	exonic	Olfr1290	nonsynonymous SNV	"Olfr1290:NM_001278787:exon2:c.C313A:p.H105N,Olfr1290:NM_001278788:exon2:c.C313A:p.H105N,Olfr1290:NM_146262:exon3:c.C313A:p.H105N"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.082050102	3	1	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	111537918	12A2p6	cell line	sgMsh2	111537918	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	336	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.G370C:p.V124L	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9995969	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr2	112071871	12A2p6	cell line	sgMsh2	112071871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	215	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T711A:p.S237S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.999999	TAG	synonymous	NA	NA	NA	NA
M7	chr2	112072201	12A2p6	cell line	sgMsh2	112072201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	261	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T381C:p.C127C	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.999932	TAC	synonymous	NA	NA	NA	NA
M7	chr2	112091992	12A2p6	cell line	sgMsh2	112091992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	270	0	0	NA	exonic	Olfr1314	synonymous SNV	Olfr1314:NM_146450:exon1:c.T708C:p.A236A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	4.57E-08	AAG	synonymous	NA	NA	NA	NA
M7	chr2	112266999	12A2p6	cell line	sgMsh2	112266999	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	77	33	7	0.212121212	exonic	Slc12a6	nonsynonymous SNV	"Slc12a6:NM_001362700:exon1:c.A178T:p.M60L,Slc12a6:NM_133649:exon1:c.A178T:p.M60L"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9974654	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	112347350	12A2p6	cell line	sgMsh2	112347350	A	G	SNV	Mutect2;Vardict	2	0.037	150	68	1	0.014705882	exonic	Slc12a6	nonsynonymous SNV	"Slc12a6:NM_001362700:exon13:c.A1813G:p.T605A,Slc12a6:NM_133648:exon14:c.A1705G:p.T569A,Slc12a6:NM_133649:exon14:c.A1858G:p.T620A"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.168658544	3	1.01E-09	TAC	nonsynonymous	ACCT	8	ACCTACCT	NA
M7	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	98	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	2	1	1	0.9992286	AAC	nonsynonymous	A	5	AAAAA	NA
M7	chr2	112957291	12A2p6	cell line	sgMsh2	112957291	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	80	0	0	NA	exonic	Ryr3	synonymous SNV	Ryr3:NM_001319156:exon7:c.G555A:p.S185S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9829725	TCG	synonymous	NA	NA	NA	NA
M7	chr2	113833515	12A2p6	cell line	sgMsh2	113833515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	164	95	16	0.168421053	exonic	Arhgap11a	nonsynonymous SNV	Arhgap11a:NM_181416:exon12:c.A2422G:p.T808A	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9968044	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	114101619	12A2p6	cell line	sgMsh2	114101619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	61	100	14	0.14	exonic	Aqr	synonymous SNV	Aqr:NM_009702:exon35:c.A4266G:p.T1422T	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	GTG	synonymous	NA	NA	NA	NA
M7	chr2	114101645	12A2p6	cell line	sgMsh2	114101645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	64	116	36	0.310344828	exonic	Aqr	nonsynonymous SNV	Aqr:NM_009702:exon35:c.A4240G:p.T1414A	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.578909056	2	0.9388566	GTT	nonsynonymous	TTC	10	TTCTTCTTCT	NA
M7	chr2	114195809	12A2p6	cell line	sgMsh2	114195809	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	184	55	9	0.163636364	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A1778C:p.K593T	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7386125	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	117153037	12A2p6	cell line	sgMsh2	117153037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	130	149	31	0.208053691	exonic	Spred1	synonymous SNV	"Spred1:NM_001277256:exon2:c.C78T:p.D26D,Spred1:NM_033524:exon2:c.C78T:p.D26D"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998744	ACT	synonymous	NA	NA	NA	NA
M7	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	184	168	41	0.244047619	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9968309	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	118927583	12A2p6	cell line	sgMsh2	118927583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	118	22	5	0.227272727	exonic	Chst14	nonsynonymous SNV	Chst14:NM_028117:exon1:c.A932G:p.E311G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.998898	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	119022129	12A2p6	cell line	sgMsh2	119022129	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	143	44	13	0.295454545	exonic	Ccdc32	nonsynonymous SNV	Ccdc32:NM_199310:exon3:c.G341A:p.R114Q	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9251619	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr2	119069078	12A2p6	cell line	sgMsh2	119069078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	140	65	13	0.2	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1259T:p.K420M,Knl1:NM_029617:exon8:c.A1259T:p.K420M"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	119069506	12A2p6	cell line	sgMsh2	119069506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	129	50	11	0.22	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1687G:p.S563G,Knl1:NM_029617:exon8:c.A1687G:p.S563G"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7028343	AAG	nonsynonymous	TAAGT	17	TAAGTTAAGTCAAGTTA	NA
M7	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	152	29	1	0.034482759	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7	chr2	119210530	12A2p6	cell line	sgMsh2	119210530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	104	37	11	0.297297297	exonic	Zfyve19	nonsynonymous SNV	"Zfyve19:NM_001164827:exon2:c.T103C:p.F35L,Zfyve19:NM_028054:exon2:c.T103C:p.F35L"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8463614	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	119270688	12A2p6	cell line	sgMsh2	119270688	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	85	3	0	0	exonic	Rhov	synonymous SNV	Rhov:NM_145530:exon2:c.A261T:p.A87A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.87184	CTG	synonymous	CCTGC	10	CCTGCCCTGC	NA
M7	chr2	119270711	12A2p6	cell line	sgMsh2	119270711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	77	2	0	0	exonic	Rhov	stopgain	Rhov:NM_145530:exon2:c.C238T:p.R80X	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9974654	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	119293418	12A2p6	cell line	sgMsh2	119293418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	81	56	13	0.232142857	exonic	Vps18	synonymous SNV	Vps18:NM_172269:exon4:c.T825C:p.P275P	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CTA	synonymous	NA	NA	NA	NA
M7	chr2	119749813	12A2p6	cell line	sgMsh2	119749813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	52	1	0	0	exonic	Itpka	nonsynonymous SNV	Itpka:NM_146125:exon4:c.A938G:p.Y313C	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	119751679	12A2p6	cell line	sgMsh2	119751679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	30	0	0	NA	exonic	Ltk	nonsynonymous SNV	"Ltk:NM_008523:exon14:c.A1654G:p.R552G,Ltk:NM_206941:exon15:c.A1837G:p.R613G,Ltk:NM_206942:exon19:c.A2407G:p.R803G,Ltk:NM_203345:exon20:c.A2590G:p.R864G"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9647308	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	72	26	8	0.307692308	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr2	119812947	12A2p6	cell line	sgMsh2	119812947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	119	14	2	0.142857143	exonic	Tyro3	synonymous SNV	"Tyro3:NM_019392:exon17:c.T2100C:p.T700T,Tyro3:NM_001290800:exon18:c.T2088C:p.T696T"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	CTG	synonymous	NA	NA	NA	NA
M7	chr2	120048394	12A2p6	cell line	sgMsh2	120048394	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.277	63	1	0	0	exonic	Sptbn5	frameshift deletion	Sptbn5:NM_001370938:exon57:c.9367delG:p.E3123Rfs*22	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7	chr2	120191246	12A2p6	cell line	sgMsh2	120191246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	79	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.T380C:p.L127P,Pla2g4e:NM_001363090:exon4:c.T113C:p.L38P"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	120524479	12A2p6	cell line	sgMsh2	120524479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	99	263	53	0.201520913	exonic	Zfp106	synonymous SNV	Zfp106:NM_011743:exon11:c.T3879C:p.S1293S	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	AAG	synonymous	NA	NA	NA	NA
M7	chr2	120533940	12A2p6	cell line	sgMsh2	120533941	TT	CC	DBS	Mutect2;Vardict	2	0.209	201	214	48	0.224299065	exonic	Zfp106	nonframeshift substitution	Zfp106:NM_011743:exon5:c.2053_2054GG:p.N685G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.952692856	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	120607915	12A2p6	cell line	sgMsh2	120607915	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	104	13	0	0	exonic	Lrrc57	frameshift deletion	"Lrrc57:NM_001159609:exon4:c.451delC:p.Q151Sfs*3,Lrrc57:NM_001159610:exon4:c.502delC:p.Q168Sfs*3,Lrrc57:NM_001159612:exon4:c.376delC:p.Q126Sfs*3,Lrrc57:NM_025657:exon4:c.376delC:p.Q126Sfs*3"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.948134517	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7	chr2	120677961	12A2p6	cell line	sgMsh2	120677961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	189	3	2	0.666666667	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon10:c.A749G:p.N250S	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9996301	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	120719193	12A2p6	cell line	sgMsh2	120719193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	142	11	5	0.454545455	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon27:c.A3542G:p.H1181R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9998786	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	120947880	12A2p6	cell line	sgMsh2	120947880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	45	28	5	0.178571429	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon6:c.T676C:p.Y226H	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.592584073	2	0.7792402	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	120955715	12A2p6	cell line	sgMsh2	120955715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	56	20	4	0.2	exonic	Ubr1	synonymous SNV	Ubr1:NM_009461:exon4:c.T423C:p.H141H	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9179861	TAT	synonymous	NA	NA	NA	NA
M7	chr2	121021461	12A2p6	cell line	sgMsh2	121021461	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	80	1	0	0	exonic	Epb42	frameshift deletion	Epb42:NM_013513:exon12:c.1851delC:p.M618Cfs*50	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.574350717	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7	chr2	121343482	12A2p6	cell line	sgMsh2	121343482	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	216	20	2	0.1	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon10:c.G1157T:p.G386V	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9633562	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	121348531	12A2p6	cell line	sgMsh2	121348531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	185	19	6	0.315789474	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon7:c.G713A:p.S238N	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9996706	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr2	121548711	12A2p6	cell line	sgMsh2	121548711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	87	7	1	0.142857143	exonic	Frmd5	nonsynonymous SNV	Frmd5:NM_001360084:exon14:c.A1657G:p.R553G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	122059523	12A2p6	cell line	sgMsh2	122059523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	91	39	14	0.358974359	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon34:c.T6337C:p.F2113L	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.998853	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	122108151	12A2p6	cell line	sgMsh2	122108151	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	40	17	2	0.117647059	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon6:c.T1321C:p.C441R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9796905	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	122123858	12A2p6	cell line	sgMsh2	122123858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	153	0	0	NA	exonic	Patl2	nonsynonymous SNV	Patl2:NM_026251:exon15:c.G1231A:p.G411S	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.738450922	2	0.8244129	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	122283210	12A2p6	cell line	sgMsh2	122283210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	145	0	0	NA	exonic	Duox2	nonsynonymous SNV	Duox2:NM_001362755:exon28:c.T3689G:p.I1230S	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M7	chr2	122349395	12A2p6	cell line	sgMsh2	122349395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	43	49	11	0.224489796	exonic	Shf	nonsynonymous SNV	"Shf:NM_001013829:exon6:c.A675T:p.E225D,Shf:NM_001374011:exon7:c.A1410T:p.E470D"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9828142	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	122799964	12A2p6	cell line	sgMsh2	122799964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	90	96	11	0.114583333	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon6:c.T857C:p.V286A,Sqor:NM_021507:exon6:c.T857C:p.V286A"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	125083128	12A2p6	cell line	sgMsh2	125083128	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	157	14	4	0.285714286	exonic	Slc24a5	nonsynonymous SNV	Slc24a5:NM_175034:exon6:c.C688T:p.P230S	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9999706	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	125377880	12A2p6	cell line	sgMsh2	125377880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	142	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon17:c.T2026C:p.L676L	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	AAC	synonymous	NA	NA	NA	NA
M7	chr2	125771416	12A2p6	cell line	sgMsh2	125771416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	180	32	6	0.1875	exonic	Secisbp2l	synonymous SNV	Secisbp2l:NM_177608:exon4:c.G657A:p.Q219Q	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999869	GCT	synonymous	NA	NA	NA	NA
M7	chr2	126459694	12A2p6	cell line	sgMsh2	126459694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	171	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon5:c.T245C:p.I82T,Atp8b4:NM_001359975:exon5:c.T245C:p.I82T"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	AAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M7	chr2	126650133	12A2p6	cell line	sgMsh2	126650133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	117	76	15	0.197368421	exonic	Gabpb1	nonsynonymous SNV	"Gabpb1:NM_001355108:exon5:c.T437C:p.V146A,Gabpb1:NM_001271468:exon6:c.T632C:p.V211A,Gabpb1:NM_001271492:exon6:c.T632C:p.V211A,Gabpb1:NM_010249:exon6:c.T632C:p.V211A,Gabpb1:NM_207669:exon6:c.T632C:p.V211A,Gabpb1:NM_001271467:exon7:c.T632C:p.V211A,Gabpb1:NM_001271470:exon7:c.T632C:p.V211A,Gabpb1:NM_001355109:exon7:c.T632C:p.V211A"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9996179	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	127086860	12A2p6	cell line	sgMsh2	127086860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	195	94	20	0.212765957	exonic	Blvra	synonymous SNV	Blvra:NM_026678:exon5:c.T267C:p.A89A	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999969	CTG	synonymous	NA	NA	NA	NA
M7	chr2	127226396	12A2p6	cell line	sgMsh2	127226396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	75	92	33	0.358695652	exonic	Snrnp200	synonymous SNV	Snrnp200:NM_177214:exon20:c.G2655A:p.Q885Q	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	AGC	synonymous	NA	NA	NA	NA
M7	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	215	99	8	0.080808081	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.999999	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	100	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	TTA	synonymous	NA	NA	NA	NA
M7	chr2	127804943	12A2p6	cell line	sgMsh2	127804943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	107	81	23	0.283950617	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon21:c.T2416C:p.F806L,Bub1:NM_009772:exon21:c.T2413C:p.F805L"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.566339	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.184	181	1	0	0	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.83873438	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	130244507	12A2p6	cell line	sgMsh2	130244507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	111	0	0	NA	exonic	Tmc2	nonsynonymous SNV	Tmc2:NM_138655:exon14:c.A1699G:p.R567G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9950525	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	130600458	12A2p6	cell line	sgMsh2	130600458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	82	17	5	0.294117647	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon4:c.G308A:p.G103D,Ubox5:NM_080562:exon4:c.G308A:p.G103D,Ubox5:NM_001255993:exon5:c.G308A:p.G103D"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	130615776	12A2p6	cell line	sgMsh2	130615776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	89	39	9	0.230769231	exonic	Fastkd5	stopgain	"Fastkd5:NM_001377124:exon2:c.T758A:p.L253X,Fastkd5:NM_001377125:exon2:c.T758A:p.L253X,Fastkd5:NM_001146084:exon3:c.T758A:p.L253X,Fastkd5:NM_198176:exon3:c.T758A:p.L253X"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	130994169	12A2p6	cell line	sgMsh2	130994169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	218	29	5	0.172413793	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon20:c.A3368T:p.K1123M	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999959	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	131179189	12A2p6	cell line	sgMsh2	131179189	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	53	164	43	0.262195122	exonic	Cenpb	nonsynonymous SNV	Cenpb:NM_007682:exon1:c.T688C:p.C230R	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.8197576	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	67	102	41	0.401960784	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	2	1	1	0.9955388	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr2	131953531	12A2p6	cell line	sgMsh2	131953531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	28	1	1	1	exonic	Prn;Prnd	synonymous SNV	"Prnd:NM_001126338:exon2:c.T516C:p.G172G,Prnd:NM_001278257:exon2:c.T516C:p.G172G,Prnd:NM_001278520:exon2:c.T516C:p.G172G,Prnd:NM_023043:exon2:c.T516C:p.G172G,Prn:NM_001278258:exon4:c.T570C:p.G190G,Prn:NM_001278259:exon4:c.T570C:p.G190G"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.96066	GTT	synonymous	NA	NA	NA	NA
M7	chr2	132058256	12A2p6	cell line	sgMsh2	132058256	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	190	25	6	0.24	exonic	Slc23a2	nonsynonymous SNV	"Slc23a2:NM_001355430:exon15:c.C1658T:p.T553I,Slc23a2:NM_018824:exon15:c.C1658T:p.T553I"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999958	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	137	26	5	0.192307692	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	136880855	12A2p6	cell line	sgMsh2	136880855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	147	37	12	0.324324324	exonic	Mkks	synonymous SNV	"Mkks:NM_001141946:exon3:c.T381C:p.C127C,Mkks:NM_001286981:exon3:c.T381C:p.C127C,Mkks:NM_021527:exon3:c.T381C:p.C127C"	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9996257	TAC	synonymous	NA	NA	NA	NA
M7	chr2	138284030	12A2p6	cell line	sgMsh2	138284030	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	82	66	13	0.196969697	exonic	Btbd3	nonsynonymous SNV	"Btbd3:NM_145534:exon4:c.T1133C:p.L378P,Btbd3:NM_001025431:exon5:c.T926C:p.L309P"	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	139546415	12A2p6	cell line	sgMsh2	139546415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	82	0	0	NA	exonic	Sptlc3	nonsynonymous SNV	"Sptlc3:NM_001356507:exon3:c.A326G:p.D109G,Sptlc3:NM_175467:exon4:c.A326G:p.D109G"	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9972281	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	140129235	12A2p6	cell line	sgMsh2	140129235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	172	67	16	0.23880597	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon11:c.A1985G:p.N662S	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9998378	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr2	140167949	12A2p6	cell line	sgMsh2	140167949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	96	80	30	0.375	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon2:c.A466G:p.S156G	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	140240982	12A2p6	cell line	sgMsh2	140240982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	156	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon18:c.A1735G:p.S579G	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999713	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	140266361	12A2p6	cell line	sgMsh2	140266361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	96	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon6:c.A602G:p.K201R	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9990927	CTT	nonsynonymous	CTTGG	10	CTTGGCTTGG	NA
M7	chr2	142707307	12A2p6	cell line	sgMsh2	142707307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	95	34	10	0.294117647	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon20:c.T3287C:p.L1096S,Kif16b:NM_001355123:exon21:c.T3320C:p.L1107S"	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	2	1	1	0.9990856	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	143858116	12A2p6	cell line	sgMsh2	143858116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	301	0	0	NA	exonic	Bfsp1	nonsynonymous SNV	"Bfsp1:NM_001291061:exon2:c.T358C:p.Y120H,Bfsp1:NM_009751:exon2:c.T358C:p.Y120H"	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	8.69E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	144594154	12A2p6	cell line	sgMsh2	144594154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	129	81	20	0.24691358	exonic	Smim26	nonsynonymous SNV	Smim26:NM_001033297:exon1:c.T64C:p.W22R	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.7378287	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	145919977	12A2p6	cell line	sgMsh2	145919977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	29	92	19	0.206521739	exonic	Crnkl1	synonymous SNV	Crnkl1:NM_025820:exon13:c.T1659C:p.S553S	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9627488	AAC	synonymous	NA	NA	NA	NA
M7	chr2	146412145	12A2p6	cell line	sgMsh2	146412145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	57	75	14	0.186666667	exonic	Ralgapa2	synonymous SNV	Ralgapa2:NM_001033348:exon18:c.T2353C:p.L785L	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.743009261	1	0.6245564	AAC	synonymous	NA	NA	NA	NA
M7	chr2	146449255	12A2p6	cell line	sgMsh2	146449255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	81	174	43	0.247126437	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon8:c.T760C:p.F254L	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	146460717	12A2p6	cell line	sgMsh2	146460717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	125	64	10	0.15625	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon4:c.A325G:p.I109V	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9168565	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	147029768	12A2p6	cell line	sgMsh2	147029768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	185	248	56	0.225806452	exonic	Xrn2	nonsynonymous SNV	"Xrn2:NM_001356402:exon11:c.T611C:p.V204A,Xrn2:NM_001356403:exon12:c.T416C:p.V139A,Xrn2:NM_011917:exon12:c.T1109C:p.V370A"	2qG2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999945	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	148688061	12A2p6	cell line	sgMsh2	148688061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	149	65	16	0.246153846	exonic	Gzf1	nonsynonymous SNV	"Gzf1:NM_001355689:exon4:c.T1511C:p.L504S,Gzf1:NM_028986:exon4:c.T1511C:p.L504S"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999572	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	149899704	12A2p6	cell line	sgMsh2	149899704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	108	0	0	NA	exonic	Syndig1	nonsynonymous SNV	"Syndig1:NM_001085521:exon2:c.T209C:p.V70A,Syndig1:NM_001363096:exon2:c.T209C:p.V70A,Syndig1:NM_001363094:exon3:c.T209C:p.V70A,Syndig1:NM_001363095:exon3:c.T209C:p.V70A"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	150324034	12A2p6	cell line	sgMsh2	150324034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	137	13	1	0.076923077	exonic	Gm10130	nonsynonymous SNV	Gm10130:NM_001374676:exon3:c.T137C:p.V46A	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	150587016	12A2p6	cell line	sgMsh2	150587016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	68	38	6	0.157894737	exonic	Apmap	nonsynonymous SNV	"Apmap:NM_027977:exon6:c.T686C:p.V229A,Apmap:NM_001356491:exon7:c.T458C:p.V153A,Apmap:NM_001356492:exon7:c.T101C:p.V34A"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9952189	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	150625060	12A2p6	cell line	sgMsh2	150625060	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	105	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.C1616T:p.T539M	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9994813	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr2	150637979	12A2p6	cell line	sgMsh2	150637979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	0	0	NA	exonic	Acss1	synonymous SNV	Acss1:NM_080575:exon5:c.T807C:p.P269P	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.996555	CAG	synonymous	NA	NA	NA	NA
M7	chr2	150667960	12A2p6	cell line	sgMsh2	150667960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	25	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon1:c.T238C:p.Y80H	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.953699	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	153000138	12A2p6	cell line	sgMsh2	153000138	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	123	0	0	NA	exonic	Ttll9	nonsynonymous SNV	"Ttll9:NM_001355717:exon10:c.T725A:p.L242Q,Ttll9:NM_001355719:exon11:c.T725A:p.L242Q,Ttll9:NM_001083618:exon12:c.T911A:p.L304Q,Ttll9:NM_001355720:exon12:c.T629A:p.L210Q,Ttll9:NM_029064:exon12:c.T911A:p.L304Q"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	153194353	12A2p6	cell line	sgMsh2	153194353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	94	55	16	0.290909091	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon10:c.T1034C:p.L345P	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.8913272	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	153261424	12A2p6	cell line	sgMsh2	153261424	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	114	30	6	0.2	exonic	Pofut1	nonsynonymous SNV	Pofut1:NM_080463:exon6:c.A977T:p.Q326L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	153932715	12A2p6	cell line	sgMsh2	153932715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	130	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon16:c.T1400C:p.V467A,Bpifb3:NM_194357:exon16:c.T1400C:p.V467A"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998744	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	153989323	12A2p6	cell line	sgMsh2	153989323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	98	0	0	NA	exonic	Bpifa6	nonsynonymous SNV	Bpifa6:NM_001080811:exon6:c.A808G:p.T270A	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.410250512	2	0.979203	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	154521212	12A2p6	cell line	sgMsh2	154521212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	168	50	13	0.26	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_001285446:exon7:c.T357C:p.A119A,Cbfa2t2:NM_009823:exon7:c.T1008C:p.A336A,Cbfa2t2:NM_172860:exon7:c.T1008C:p.A336A"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9998086	CTG	synonymous	NA	NA	NA	NA
M7	chr2	154877775	12A2p6	cell line	sgMsh2	154877775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	207	432	107	0.247685185	exonic	Eif2s2	synonymous SNV	Eif2s2:NM_026030:exon6:c.T573C:p.D191D	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999984	TAT	synonymous	NA	NA	NA	NA
M7	chr2	155414879	12A2p6	cell line	sgMsh2	155414879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	166	62	10	0.161290323	exonic	Ncoa6	nonsynonymous SNV	"Ncoa6:NM_001242558:exon8:c.A2743G:p.T915A,Ncoa6:NM_019825:exon8:c.A2743G:p.T915A"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999837	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	155653508	12A2p6	cell line	sgMsh2	155653508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	101	157	34	0.21656051	exonic	Trpc4ap	nonsynonymous SNV	"Trpc4ap:NM_001163452:exon8:c.T1036C:p.S346P,Trpc4ap:NM_019828:exon8:c.T1036C:p.S346P"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	155815849	12A2p6	cell line	sgMsh2	155815849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	87	3	1	0.333333333	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon9:c.G1658A:p.R553Q	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9249079	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr2	155826134	12A2p6	cell line	sgMsh2	155826134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	81	244	3	0.012295082	exonic	Eif6	nonsynonymous SNV	Eif6:NM_010579:exon2:c.A184G:p.M62V	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.483183936	2	0.9977019	ATG	nonsynonymous	CA	8	CACACACA	NA
M7	chr2	155979285	12A2p6	cell line	sgMsh2	155979285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	48	38	8	0.210526316	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon19:c.A2791G:p.S931G,Cep250:NM_001130000:exon19:c.A2794G:p.S932G,Cep250:NM_008383:exon20:c.A2731G:p.S911G,Cep250:NM_177217:exon20:c.A2731G:p.S911G"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	155986018	12A2p6	cell line	sgMsh2	155986018	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	42	34	8	0.235294118	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon24:c.A3548T:p.E1183V,Cep250:NM_001130000:exon24:c.A3551T:p.E1184V,Cep250:NM_008383:exon25:c.A3488T:p.E1163V,Cep250:NM_177217:exon25:c.A3488T:p.E1163V"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr2	156096428	12A2p6	cell line	sgMsh2	156096428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	42	12	0.285714286	exonic	Rbm12	nonsynonymous SNV	"Rbm12:NM_029397:exon3:c.A1923G:p.I641M,Rbm12:NM_170598:exon3:c.A1923G:p.I641M"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr2	156144569	12A2p6	cell line	sgMsh2	156144569	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	49	162	40	0.24691358	exonic	Romo1	synonymous SNV	"Romo1:NM_025946:exon1:c.C111T:p.F37F,Romo1:NM_001164216:exon2:c.C111T:p.F37F,Romo1:NM_001164217:exon2:c.C111T:p.F37F"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.711100888	1	0.5500065	TCG	synonymous	NA	NA	NA	NA
M7	chr2	156514114	12A2p6	cell line	sgMsh2	156514114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	50	27	1	0.037037037	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon14:c.A1572G:p.K524K,Epb41l1:NM_001291121:exon14:c.A1536G:p.K512K,Epb41l1:NM_001291122:exon14:c.A1536G:p.K512K,Epb41l1:NM_001291123:exon14:c.A1533G:p.K511K,Epb41l1:NM_001368802:exon14:c.A1569G:p.K523K,Epb41l1:NM_001368804:exon14:c.A1572G:p.K524K,Epb41l1:NM_013510:exon14:c.A1572G:p.K524K,Epb41l1:NM_001291120:exon15:c.A1572G:p.K524K,Epb41l1:NM_001368800:exon15:c.A1569G:p.K523K,Epb41l1:NM_001368801:exon15:c.A1548G:p.K516K,Epb41l1:NM_001368803:exon15:c.A1572G:p.K524K"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	2	1	1	0.9883813	AAC	synonymous	NA	NA	NA	NA
M7	chr2	156748402	12A2p6	cell line	sgMsh2	156748402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	60	14	0.233333333	exonic	Dlgap4	nonsynonymous SNV	"Dlgap4:NM_001042487:exon3:c.A464G:p.Q155R,Dlgap4:NM_001277187:exon8:c.A2030G:p.Q677R,Dlgap4:NM_146128:exon9:c.A2081G:p.Q694R"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9982944	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	157169951	12A2p6	cell line	sgMsh2	157169951	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	128	51	12	0.235294118	exonic	Rbl1	nonsynonymous SNV	Rbl1:NM_011249:exon15:c.A2083T:p.I695F	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9998215	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr2	157295373	12A2p6	cell line	sgMsh2	157295373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	139	259	61	0.235521236	exonic	Rpn2	nonsynonymous SNV	"Rpn2:NM_001355163:exon6:c.A675C:p.E225D,Rpn2:NM_001355164:exon6:c.A666C:p.E222D,Rpn2:NM_001355165:exon6:c.A21C:p.E7D,Rpn2:NM_019642:exon6:c.A675C:p.E225D"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7645373	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	158120220	12A2p6	cell line	sgMsh2	158120220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	42	97	3	0.030927835	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon11:c.A1678G:p.I560V	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	10	2	0.2	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr2	160715046	12A2p6	cell line	sgMsh2	160715046	-	T	Insertion	Strelka2;Vardict	2	0.16	75	203	0	0	exonic	Top1	frameshift insertion	Top1:NM_009408:exon16:c.1646dupT:p.K551fs*0	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.729334244	NA	NA	GGT	frameshift	T	5	TTTTT	1
M7	chr2	160753658	12A2p6	cell line	sgMsh2	160753658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	80	115	21	0.182608696	exonic	Plcg1	nonsynonymous SNV	Plcg1:NM_021280:exon16:c.T1525C:p.Y509H	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	160895539	12A2p6	cell line	sgMsh2	160895539	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	81	11	3	0.272727273	exonic	Lpin3	nonsynonymous SNV	"Lpin3:NM_001199118:exon4:c.A505G:p.T169A,Lpin3:NM_022883:exon4:c.A505G:p.T169A"	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	160965718	12A2p6	cell line	sgMsh2	160965718	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	130	48	0	0	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon31:c.A5575G:p.K1859E	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	2.18E-09	TTA	nonsynonymous	ACTT	8	ACTTACTT	NA
M7	chr2	163566193	12A2p6	cell line	sgMsh2	163566193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	88	319	82	0.257053292	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon8:c.A965G:p.Y322C,Hnf4a:NM_001312906:exon9:c.A890G:p.Y297C,Hnf4a:NM_001312907:exon9:c.A890G:p.Y297C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8281297	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	164025647	12A2p6	cell line	sgMsh2	164025647	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	74	0	0	NA	exonic	Pabpc1l	nonsynonymous SNV	Pabpc1l:NM_001114079:exon1:c.A167G:p.Y56C	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.401133834	2	0.9258754	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	164215417	12A2p6	cell line	sgMsh2	164215417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	122	0	0	NA	exonic	Wfdc15b	nonsynonymous SNV	"Wfdc15b:NM_001045554:exon2:c.A53G:p.N18S,Wfdc15b:NM_138685:exon2:c.A53G:p.N18S"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.6021089	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	164237343	12A2p6	cell line	sgMsh2	164237343	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	213	0	0	NA	exonic	Svs2	nonsynonymous SNV	Svs2:NM_017390:exon2:c.T643C:p.Y215H	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.14130851	3	1	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	164392924	12A2p6	cell line	sgMsh2	164392924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	100	1	0	0	exonic	Matn4	synonymous SNV	"Matn4:NM_001252563:exon9:c.A1626G:p.P542P,Matn4:NM_013592:exon9:c.A1626G:p.P542P"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.743009261	2	0.5791709	ATG	synonymous	NA	NA	NA	NA
M7	chr2	164404506	12A2p6	cell line	sgMsh2	164404506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	56	1	0	0	exonic	Rbpjl	nonsynonymous SNV	Rbpjl:NM_009036:exon2:c.A70C:p.S24R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9917055	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	164778067	12A2p6	cell line	sgMsh2	164778067	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	156	4	0	0	exonic	Tnnc2	nonsynonymous SNV	Tnnc2:NM_009394:exon3:c.A76G:p.M26V	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.191450239	3	1.06E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	164820502	12A2p6	cell line	sgMsh2	164820502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	137	32	8	0.25	exonic	Zswim3	nonsynonymous SNV	Zswim3:NM_178375:exon2:c.C901T:p.L301F	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	TCT	nonsynonymous	CTCTC	10	CTCTCCTCTC	NA
M7	chr2	164889684	12A2p6	cell line	sgMsh2	164889684	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	120	42	12	0.285714286	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon13:c.T1607A:p.F536Y,Pcif1:NM_001374127:exon14:c.T1556A:p.F519Y,Pcif1:NM_001374128:exon14:c.T1556A:p.F519Y,Pcif1:NM_146129:exon14:c.T1556A:p.F519Y"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr2	165353130	12A2p6	cell line	sgMsh2	165353130	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	58	0	0	NA	exonic	Zfp663	nonsynonymous SNV	"Zfp663:NM_001379475:exon5:c.A1168T:p.T390S,Zfp663:NM_001379476:exon5:c.A1060T:p.T354S,Zfp663:NM_001005425:exon6:c.A1168T:p.T390S,Zfp663:NM_001379474:exon6:c.A1168T:p.T390S"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9556213	GTT	nonsynonymous	G	5	GGGGG	NA
M7	chr2	165380247	12A2p6	cell line	sgMsh2	165380247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	131	25	5	0.2	exonic	Zfp334	synonymous SNV	Zfp334:NM_178411:exon5:c.A1875G:p.K625K	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998813	GTT	synonymous	NA	NA	NA	NA
M7	chr2	165685599	12A2p6	cell line	sgMsh2	165685599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	94	161	34	0.211180124	exonic	Eya2	nonsynonymous SNV	"Eya2:NM_001271962:exon4:c.A188G:p.Y63C,Eya2:NM_001271963:exon4:c.A188G:p.Y63C,Eya2:NM_010165:exon4:c.A188G:p.Y63C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr2	166050147	12A2p6	cell line	sgMsh2	166050147	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	141	90	2	0.022222222	exonic	Ncoa3	nonsynonymous SNV	"Ncoa3:NM_001374779:exon6:c.T442C:p.Y148H,Ncoa3:NM_008679:exon6:c.T442C:p.Y148H"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.19E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	166863660	12A2p6	cell line	sgMsh2	166863660	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	94	51	23	0.450980392	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon20:c.G2810A:p.R937H	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9923427	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr2	166928968	12A2p6	cell line	sgMsh2	166928968	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	145	230	2	0.008695652	exonic	Cse1l	synonymous SNV	Cse1l:NM_023565:exon11:c.A1077G:p.E359E	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.214241934	3	6.27E-09	AAG	synonymous	NA	NA	NA	NA
M7	chr2	168182309	12A2p6	cell line	sgMsh2	168182309	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	152	304	36	0.118421053	exonic	Adnp	frameshift deletion	"Adnp:NM_001310088:exon3:c.2381delA:p.K794Rfs*10,Adnp:NM_009628:exon4:c.3065delA:p.K1022Rfs*10,Adnp:NM_001310086:exon5:c.3065delA:p.K1022Rfs*10"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M7	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	207	293	68	0.232081911	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	169884258	12A2p6	cell line	sgMsh2	169884258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	84	5	0	0	exonic	Tshz2	nonsynonymous SNV	"Tshz2:NM_001363022:exon2:c.A773G:p.K258R,Tshz2:NM_001363023:exon2:c.A773G:p.K258R,Tshz2:NM_080455:exon2:c.A773G:p.K258R,Tshz2:NM_177659:exon2:c.A773G:p.K258R"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr2	170496688	12A2p6	cell line	sgMsh2	170496688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	60	0	0	NA	exonic	Cyp24a1	synonymous SNV	Cyp24a1:NM_009996:exon1:c.A87G:p.T29T	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	ATG	synonymous	NA	NA	NA	NA
M7	chr2	172042266	12A2p6	cell line	sgMsh2	172042266	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	21	0	0	NA	exonic	Cbln4	synonymous SNV	Cbln4:NM_175631:exon1:c.A33C:p.V11V	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.8153581	GTA	synonymous	NA	NA	NA	NA
M7	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	129	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr2	172445350	12A2p6	cell line	sgMsh2	172445350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	275	135	22	0.162962963	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon3:c.T188C:p.I63T	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	3.46E-08	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr2	172468763	12A2p6	cell line	sgMsh2	172468763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	92	71	12	0.169014085	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon9:c.T913C:p.Y305H	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	174345240	12A2p6	cell line	sgMsh2	174345240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	219	1819	381	0.209455745	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon7:c.T2773C:p.C925R,Gnas:NM_001077510:exon7:c.T556C:p.C186R,Gnas:NM_001364030:exon7:c.T553C:p.C185R,Gnas:NM_010309:exon8:c.T2815C:p.C939R,Gnas:NM_201616:exon8:c.T598C:p.C200R,Gnas:NM_001310083:exon9:c.T598C:p.C200R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.6537359	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr2	174648180	12A2p6	cell line	sgMsh2	174648180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	151	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon2:c.C3739T:p.R1247C	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	81	23	4	0.173913043	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CTA	synonymous	NA	NA	NA	NA
M7	chr2	178477681	12A2p6	cell line	sgMsh2	178477681	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	0	0	NA	exonic	Cdh26	synonymous SNV	Cdh26:NM_198656:exon13:c.T1992C:p.T664T	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9998784	CTT	synonymous	NA	NA	NA	NA
M7	chr2	180052506	12A2p6	cell line	sgMsh2	180052506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	60	6	3	0.5	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon2:c.T112C:p.Y38H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9278357	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	180058120	12A2p6	cell line	sgMsh2	180058120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	130	7	1	0.142857143	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon7:c.T772C:p.Y258H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.996265	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	180145179	12A2p6	cell line	sgMsh2	180145179	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	147	68	8	0.117647059	exonic	Osbpl2	nonsynonymous SNV	Osbpl2:NM_144500:exon6:c.T484G:p.L162V	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999233	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	180202253	12A2p6	cell line	sgMsh2	180202253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	119	172	49	0.284883721	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon8:c.G1114A:p.D372N	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr2	180258378	12A2p6	cell line	sgMsh2	180258378	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	306	593	393	0.662731872	exonic	Rps21	synonymous SNV	"Rps21:NM_001355516:exon5:c.G243A:p.K81K,Rps21:NM_001355517:exon6:c.G243A:p.K81K,Rps21:NM_001355518:exon6:c.G243A:p.K81K,Rps21:NM_001355520:exon6:c.G243A:p.K81K,Rps21:NM_001355521:exon6:c.G243A:p.K81K,Rps21:NM_025587:exon6:c.G243A:p.K81K"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.765800956	2	0.09751057	GGA	synonymous	NA	NA	NA	NA
M7	chr2	180263110	12A2p6	cell line	sgMsh2	180263110	T	C	SNV	Mutect2;Vardict	2	0.04	143	37	1	0.027027027	exonic	Cables2	synonymous SNV	Cables2:NM_145851:exon4:c.A567G:p.S189S	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.14E-09	CTG	synonymous	NA	NA	NA	NA
M7	chr2	180472226	12A2p6	cell line	sgMsh2	180472226	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	122	41	3	0.073170732	exonic	Slco4a1	synonymous SNV	"Slco4a1:NM_001355218:exon7:c.T1455C:p.G485G,Slco4a1:NM_148933:exon7:c.T1455C:p.G485G"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.501417293	2	0.9999213	GTG	synonymous	NA	NA	NA	NA
M7	chr2	180606477	12A2p6	cell line	sgMsh2	180606477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	90	0	0	NA	exonic	Col9a3	synonymous SNV	"Col9a3:NM_001378777:exon13:c.T621C:p.G207G,Col9a3:NM_009936:exon13:c.T621C:p.G207G"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	GTA	synonymous	NA	NA	NA	NA
M7	chr2	180911048	12A2p6	cell line	sgMsh2	180911048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	123	144	30	0.208333333	exonic	Ythdf1	nonsynonymous SNV	Ythdf1:NM_173761:exon4:c.A1292G:p.K431R	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr2	181233173	12A2p6	cell line	sgMsh2	181233173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	72	14	0	0	exonic	Helz2	nonsynonymous SNV	Helz2:NM_183162:exon9:c.A5527G:p.T1843A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.5306962	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr2	181234371	12A2p6	cell line	sgMsh2	181234371	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	135	12	0	0	exonic	Helz2	synonymous SNV	Helz2:NM_183162:exon9:c.G4329A:p.E1443E	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.52E-09	ACT	synonymous	NA	NA	NA	NA
M7	chr2	181597313	12A2p6	cell line	sgMsh2	181597313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	142	18	4	0.222222222	exonic	Samd10	nonsynonymous SNV	"Samd10:NM_001370751:exon3:c.T337C:p.Y113H,Samd10:NM_172676:exon3:c.T304C:p.Y102H"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.51509231	2	0.9999774	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr2	181670370	12A2p6	cell line	sgMsh2	181670370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	96	0	0	NA	exonic	Sox18	nonsynonymous SNV	Sox18:NM_009236:exon2:c.T967C:p.Y323H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.102505121	NA	1	0.706542549	2	0.7820285	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	112	28	1	0.035714286	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	10340799	12A2p6	cell line	sgMsh2	10340799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	79	64	9	0.140625	exonic	Zfand1	nonsynonymous SNV	"Zfand1:NM_001331014:exon8:c.T674C:p.V225A,Zfand1:NM_001331015:exon8:c.T422C:p.V141A,Zfand1:NM_025512:exon8:c.T743C:p.V248A"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8917157	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	14539921	12A2p6	cell line	sgMsh2	14539921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	139	20	5	0.25	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon6:c.A716G:p.D239G,Lrrcc1:NM_001163580:exon6:c.A716G:p.D239G,Lrrcc1:NM_028915:exon6:c.A716G:p.D239G"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9993646	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
M7	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	79	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9977367	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	18103736	12A2p6	cell line	sgMsh2	18103736	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	94	0	0	NA	exonic	Cyp7b1	nonsynonymous SNV	Cyp7b1:NM_007825:exon2:c.G218T:p.R73M	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	20266459	12A2p6	cell line	sgMsh2	20266459	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	0	0	NA	exonic	Cpb1	nonsynonymous SNV	Cpb1:NM_029706:exon4:c.G331A:p.G111R	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9905847	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr3	23846609	12A2p6	cell line	sgMsh2	23846609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	83	0	0	NA	exonic	Naaladl2	nonsynonymous SNV	Naaladl2:NM_001326288:exon13:c.T2056C:p.F686L	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9948641	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	25436635	12A2p6	cell line	sgMsh2	25436635	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	102	0	0	NA	exonic	Nlgn1	frameshift deletion	"Nlgn1:NM_001163387:exon5:c.840delT:p.Q281Nfs*3,Nlgn1:NM_001357096:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357097:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357095:exon6:c.927delT:p.Q310Nfs*3,Nlgn1:NM_138666:exon7:c.927delT:p.Q310Nfs*3"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr3	27239540	12A2p6	cell line	sgMsh2	27239540	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	109	72	10	0.138888889	exonic	Nceh1	nonsynonymous SNV	Nceh1:NM_178772:exon4:c.T446G:p.L149R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9954326	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	28625210	12A2p6	cell line	sgMsh2	28625210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	200	0	0	NA	exonic	Tnik	synonymous SNV	Tnik:NM_026910:exon21:c.A2394G:p.K798K	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9587527	AAG	synonymous	NA	NA	NA	NA
M7	chr3	28708492	12A2p6	cell line	sgMsh2	28708492	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	184	0	0	NA	exonic	Slc2a2	synonymous SNV	Slc2a2:NM_031197:exon3:c.C183T:p.V61V	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1.00E-09	TCA	synonymous	NA	NA	NA	NA
M7	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	217	11	3	0.272727273	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999991	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr3	30679349	12A2p6	cell line	sgMsh2	30679349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	84	0	0	NA	exonic	Lrrc31	synonymous SNV	Lrrc31:NM_001309233:exon9:c.A1215G:p.L405L	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9982947	GTA	synonymous	NA	NA	NA	NA
M7	chr3	30907437	12A2p6	cell line	sgMsh2	30907437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	91	27	6	0.222222222	exonic	Phc3	nonsynonymous SNV	"Phc3:NM_001165955:exon14:c.C2746A:p.L916M,Phc3:NM_001165954:exon15:c.C2881A:p.L961M,Phc3:NM_153421:exon15:c.C2845A:p.L949M,Phc3:NM_001165956:exon16:c.C2755A:p.L919M"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.6147449	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	31118554	12A2p6	cell line	sgMsh2	31118554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	61	205	43	0.209756098	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon7:c.A1831G:p.M611V,Skil:NM_011386:exon7:c.A1969G:p.M657V,Skil:NM_001271772:exon9:c.A1591G:p.M531V"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9902942	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M7	chr3	34651199	12A2p6	cell line	sgMsh2	34651199	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	20	0	0	NA	exonic	Sox2	nonsynonymous SNV	Sox2:NM_011443:exon1:c.C784A:p.H262N	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9394328	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr3	36973333	12A2p6	cell line	sgMsh2	36973333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	86	13	2	0.153846154	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon43:c.A6865G:p.R2289G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M7	chr3	37085038	12A2p6	cell line	sgMsh2	37085038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	83	0	0	NA	exonic	Adad1	nonsynonymous SNV	Adad1:NM_009350:exon9:c.T1256G:p.V419G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.670075836	2	0.8559372	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	37085145	12A2p6	cell line	sgMsh2	37085145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	51	0	0	NA	exonic	Adad1	nonsynonymous SNV	Adad1:NM_009350:exon9:c.A1363G:p.S455G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9890151	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	37320357	12A2p6	cell line	sgMsh2	37320357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	191	31	3	0.096774194	exonic	Bbs12	nonsynonymous SNV	"Bbs12:NM_001008502:exon2:c.T1298C:p.V433A,Bbs12:NM_001255992:exon2:c.T953C:p.V318A"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999961	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	38454137	12A2p6	cell line	sgMsh2	38454137	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	54	193	8	0.041450777	exonic	Ankrd50	frameshift deletion	Ankrd50:NM_001373894:exon4:c.4191delC:p.S1398Rfs*4	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7	chr3	38454366	12A2p6	cell line	sgMsh2	38454366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	184	361	15	0.041551247	exonic	Ankrd50	nonsynonymous SNV	Ankrd50:NM_001373894:exon4:c.C3962T:p.T1321M	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.9260049	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr3	38979852	12A2p6	cell line	sgMsh2	38979852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	141	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon9:c.C7652T:p.T2551I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9981727	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr3	45381123	12A2p6	cell line	sgMsh2	45381123	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.149	29	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098171:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098172:exon1:c.A1871G:p.N624S,Pcdh10:NM_011043:exon1:c.A1871G:p.N624S"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.679192515	1	8.42E-05	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	45381524	12A2p6	cell line	sgMsh2	45381524	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	64	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098171:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098172:exon1:c.C2272A:p.L758I,Pcdh10:NM_011043:exon1:c.C2272A:p.L758I"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9947155	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	45381753	12A2p6	cell line	sgMsh2	45381753	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	106	0	0	NA	exonic	Pcdh10	frameshift deletion	"Pcdh10:NM_001098170:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098171:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098172:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_011043:exon1:c.2501delT:p.L834Rfs*3"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTG	frameshift	GACC	8	GACCGACC	-1
M7	chr3	45392730	12A2p6	cell line	sgMsh2	45392730	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	66	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098171:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098172:exon4:c.T2959C:p.F987L"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9952797	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	46446427	12A2p6	cell line	sgMsh2	46446427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	187	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.T781C:p.F261L	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.999995	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr3	46447011	12A2p6	cell line	sgMsh2	46447011	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	202	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.A197C:p.K66T	3qB	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999979	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	49744983	12A2p6	cell line	sgMsh2	49744983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	136	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.T3029C:p.V1010A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.7974286	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	51493496	12A2p6	cell line	sgMsh2	51493496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	175	40	10	0.25	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.G390A:p.E130E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999902	AGG	synonymous	NA	NA	NA	NA
M7	chr3	51493550	12A2p6	cell line	sgMsh2	51493550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	186	42	10	0.238095238	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.T444C:p.N148N	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999948	ATA	synonymous	AAAT	8	AAATAAAT	NA
M7	chr3	51521321	12A2p6	cell line	sgMsh2	51521321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	51	28	4	0.142857143	exonic	Setd7	nonsynonymous SNV	Setd7:NM_080793:exon8:c.A1087G:p.T363A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.729334244	1	0.603071	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr3	52345836	12A2p6	cell line	sgMsh2	52345836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	132	46	15	0.326086957	exonic	Foxo1	synonymous SNV	Foxo1:NM_019739:exon2:c.T1419C:p.I473I	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9987889	TTA	synonymous	NA	NA	NA	NA
M7	chr3	54279869	12A2p6	cell line	sgMsh2	54279869	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	99	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon5:c.T1241C:p.I414T,Trpc4:NM_016984:exon5:c.T1241C:p.I414T"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.369225461	2	7.85E-06	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr3	54318065	12A2p6	cell line	sgMsh2	54318065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	129	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_016984:exon11:c.A2834G:p.K945R,Trpc4:NM_001253682:exon12:c.A2582G:p.K861R"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr3	54794474	12A2p6	cell line	sgMsh2	54794474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	146	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.A1135G:p.M379V	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.5911968	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	55783246	12A2p6	cell line	sgMsh2	55783246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	131	1	0	0	exonic	Mab21l1	nonsynonymous SNV	Mab21l1:NM_010750:exon1:c.G253A:p.V85M	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998813	GGT	nonsynonymous	G	5	GGGGG	NA
M7	chr3	55783387	12A2p6	cell line	sgMsh2	55783387	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	100	0	0	NA	exonic	Mab21l1	nonsynonymous SNV	Mab21l1:NM_010750:exon1:c.T394C:p.F132L	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.237033629	3	0.9999822	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	188	21	7	0.333333333	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999953	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	77	228	3	0.013157895	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr3	59217615	12A2p6	cell line	sgMsh2	59217615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	170	4	0	0	exonic	P2ry12	nonsynonymous SNV	"P2ry12:NM_001357007:exon3:c.T638C:p.V213A,P2ry12:NM_001357010:exon4:c.T638C:p.V213A,P2ry12:NM_027571:exon4:c.T638C:p.V213A,P2ry12:NM_001357008:exon5:c.T638C:p.V213A"	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9734708	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	59319866	12A2p6	cell line	sgMsh2	59319866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	174	1	0	0	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon7:c.A6385G:p.T2129A	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr3	59319877	12A2p6	cell line	sgMsh2	59319877	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	166	1	0	0	exonic	Igsf10	frameshift deletion	Igsf10:NM_001162884:exon7:c.6374delA:p.K2125Rfs*49	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr3	59331736	12A2p6	cell line	sgMsh2	59331736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	141	3	1	0.333333333	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.A1023G:p.L341L	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	GTA	synonymous	NA	NA	NA	NA
M7	chr3	60039863	12A2p6	cell line	sgMsh2	60039863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	198	0	0	NA	exonic	Aadac	nonsynonymous SNV	Aadac:NM_023383:exon5:c.A981G:p.I327M	3qD	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999973	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	62340037	12A2p6	cell line	sgMsh2	62340037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	47	2	0	0	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.T541C:p.S181P	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9862553	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr3	62340491	12A2p6	cell line	sgMsh2	62340491	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	117	8	2	0.25	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.A995T:p.K332M	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9970387	AAG	nonsynonymous	AAG	11	AAGAAGAAGAA	NA
M7	chr3	62472815	12A2p6	cell line	sgMsh2	62472815	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.026	220	127	0	0	exonic	Dhx36	nonsynonymous SNV	Dhx36:NM_028136:exon22:c.A2459G:p.N820S	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.118516815	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr3	63697910	12A2p6	cell line	sgMsh2	63697910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	225	45	8	0.177777778	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A4572G:p.S1524S,Plch1:NM_001370984:exon24:c.A4548G:p.S1516S"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999994	ATG	synonymous	NA	NA	NA	NA
M7	chr3	64104991	12A2p6	cell line	sgMsh2	64104991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	337	0	0	NA	exonic	Vmn2r1	nonsynonymous SNV	"Vmn2r1:NM_019918:exon6:c.T2272C:p.F758L,Vmn2r1:NM_001384924:exon7:c.T2047C:p.F683L"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	2.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	64503772	12A2p6	cell line	sgMsh2	64503772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	591	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon2:c.T1113C:p.H371H,Vmn2r5:NM_001385126:exon3:c.T1374C:p.H458H"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M7	chr3	66157922	12A2p6	cell line	sgMsh2	66157922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	146	0	0	NA	exonic	Veph1	nonsynonymous SNV	Veph1:NM_145820:exon9:c.T1723C:p.C575R	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	66220810	12A2p6	cell line	sgMsh2	66220810	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	8	0	0	NA	exonic	Ptx3	synonymous SNV	Ptx3:NM_008987:exon2:c.C291A:p.G97G	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.8864299	GCG	synonymous	GGCG	9	GGCGGGCGG	NA
M7	chr3	67485187	12A2p6	cell line	sgMsh2	67485187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	32	0	0	NA	exonic	Rarres1	synonymous SNV	Rarres1:NM_001164763:exon4:c.C591T:p.T197T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9683943	GGG	synonymous	NA	NA	NA	NA
M7	chr3	68916152	12A2p6	cell line	sgMsh2	68916152	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.231	107	35	0	0	exonic	Ift80	frameshift insertion	Ift80:NM_026641:exon16:c.1775dupT:p.H593Pfs*1	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GGA	frameshift	NA	NA	NA	1
M7	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	94	36	5	0.138888889	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	68950427	12A2p6	cell line	sgMsh2	68950427	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	144	34	7	0.205882353	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon9:c.T884A:p.F295Y	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9997622	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr3	69006113	12A2p6	cell line	sgMsh2	69006113	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.136	22	122	32	0.262295082	exonic	Smc4	synonymous SNV	Smc4:NM_133786:exon2:c.C33T:p.A11A	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.619934107	1	0.593443	CCT	synonymous	CTGC	9	CTGCCTGCC	NA
M7	chr3	69575824	12A2p6	cell line	sgMsh2	69575824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	97	19	7	0.368421053	exonic	B3galnt1	nonsynonymous SNV	B3galnt1:NM_020026:exon3:c.T103C:p.Y35H	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9990226	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	198	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.9676277	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	72909013	12A2p6	cell line	sgMsh2	72909013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	82	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon40:c.G4619A:p.G1540E	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr3	72918581	12A2p6	cell line	sgMsh2	72918581	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	125	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon33:c.C3919T:p.Q1307X	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998332	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr3	72943513	12A2p6	cell line	sgMsh2	72943513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon16:c.G1851T:p.M617I	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9982944	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr3	73049547	12A2p6	cell line	sgMsh2	73049547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.T1891C:p.Y631H,Slitrk3:NM_198864:exon2:c.T1891C:p.Y631H"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9987292	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr3	79481028	12A2p6	cell line	sgMsh2	79481028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	55	16	7	0.4375	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon13:c.T2305C:p.C769R	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9895516	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	79512558	12A2p6	cell line	sgMsh2	79512558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	206	19	2	0.105263158	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.T410C:p.M137T	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999983	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	79886907	12A2p6	cell line	sgMsh2	79886907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	85	0	0	NA	exonic	Gask1b	synonymous SNV	Gask1b:NM_133187:exon1:c.T681C:p.A227A	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9973417	CTG	synonymous	NA	NA	NA	NA
M7	chr3	81969552	12A2p6	cell line	sgMsh2	81969552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	102	0	0	NA	exonic	Tdo2	synonymous SNV	Tdo2:NM_019911:exon5:c.G369A:p.K123K	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	GCT	synonymous	NA	NA	NA	NA
M7	chr3	82359114	12A2p6	cell line	sgMsh2	82359114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	156	5	0	0	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon2:c.C65A:p.T22N,Map9:NM_001356457:exon2:c.C65A:p.T22N"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999713	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr3	84595291	12A2p6	cell line	sgMsh2	84595291	A	G	SNV	Mutect2;Vardict	2	0.03	181	1	0	0	exonic	Tigd4	nonsynonymous SNV	Tigd4:NM_207278:exon1:c.A1514G:p.N505S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	85993971	12A2p6	cell line	sgMsh2	85993971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	80	0	0	NA	exonic	Prss48	nonsynonymous SNV	Prss48:NM_001001650:exon6:c.A788G:p.N263S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	86107262	12A2p6	cell line	sgMsh2	86107262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	100	261	63	0.24137931	exonic	Sh3d19	synonymous SNV	"Sh3d19:NM_001082414:exon14:c.A2010G:p.E670E,Sh3d19:NM_001374679:exon15:c.A2010G:p.E670E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.565234039	2	0.9962276	AAT	synonymous	NA	NA	NA	NA
M7	chr3	86395233	12A2p6	cell line	sgMsh2	86395233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	134	27	4	0.148148148	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon35:c.T5599C:p.S1867P,Lrba:NM_001077688:exon35:c.T5599C:p.S1867P,Lrba:NM_030695:exon35:c.T5599C:p.S1867P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.610817429	2	0.9979995	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr3	86751608	12A2p6	cell line	sgMsh2	86751608	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	81	34	8	0.235294118	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077688:exon52:c.T7781A:p.I2594N,Lrba:NM_030695:exon52:c.T7781A:p.I2594N"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9979789	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr3	87257370	12A2p6	cell line	sgMsh2	87257370	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	107	0	0	NA	exonic	Fcrls	nonsynonymous SNV	Fcrls:NM_030707:exon5:c.A848G:p.Y283C	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.27805868	3	0.9996632	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	87389666	12A2p6	cell line	sgMsh2	87389666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	175	0	0	NA	exonic	Fcrl1	synonymous SNV	"Fcrl1:NM_001136236:exon7:c.A792G:p.A264A,Fcrl1:NM_001310545:exon8:c.A921G:p.A307A,Fcrl1:NM_178165:exon8:c.A921G:p.A307A,Fcrl1:NM_153090:exon9:c.A981G:p.A327A"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999902	CAG	synonymous	CAG	9	CAGCAGCAG	NA
M7	chr3	87756153	12A2p6	cell line	sgMsh2	87756153	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	33	63	14	0.222222222	exonic	Pear1	nonsynonymous SNV	"Pear1:NM_001032414:exon10:c.C1237T:p.L413F,Pear1:NM_001289600:exon10:c.C1000T:p.L334F,Pear1:NM_001032413:exon11:c.C1237T:p.L413F,Pear1:NM_001289601:exon12:c.C481T:p.L161F,Pear1:NM_028460:exon12:c.C1237T:p.L413F,Pear1:NM_152799:exon12:c.C1237T:p.L413F"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9319515	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	88159205	12A2p6	cell line	sgMsh2	88159205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	57	108	23	0.212962963	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310587:exon5:c.T480C:p.S160S,Mef2d:NM_001310593:exon5:c.T477C:p.S159S,Mef2d:NM_133665:exon5:c.T480C:p.S160S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9862611	GTA	synonymous	NA	NA	NA	NA
M7	chr3	88168116	12A2p6	cell line	sgMsh2	88168116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	68	38	7	0.184210526	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310593:exon10:c.A1281G:p.P427P,Mef2d:NM_133665:exon10:c.A1284G:p.P428P,Mef2d:NM_001310587:exon11:c.A1305G:p.P435P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.65184248	2	0.8229027	CAG	synonymous	NA	NA	NA	NA
M7	chr3	88245865	12A2p6	cell line	sgMsh2	88245865	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	exonic	Rhbg	nonsynonymous SNV	Rhbg:NM_021375:exon5:c.A781C:p.S261R	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999246	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr3	88359028	12A2p6	cell line	sgMsh2	88359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	118	33	5	0.151515152	exonic	Smg5	nonsynonymous SNV	Smg5:NM_178246:exon18:c.T2507C:p.L836P	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5322487	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr3	89735373	12A2p6	cell line	sgMsh2	89735373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	94	20	2	0.1	exonic	Adar	nonsynonymous SNV	"Adar:NM_001146296:exon2:c.T560C:p.L187P,Adar:NM_001357958:exon2:c.T677C:p.L226P,Adar:NM_019655:exon2:c.T560C:p.L187P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr3	89871177	12A2p6	cell line	sgMsh2	89871177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	66	1	0	0	exonic	Il6ra	nonsynonymous SNV	"Il6ra:NM_001310676:exon10:c.A1364G:p.Y455C,Il6ra:NM_010559:exon10:c.A1367G:p.Y456C"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9392076	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	89947846	12A2p6	cell line	sgMsh2	89947846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	64	59	8	0.13559322	exonic	Atp8b2	synonymous SNV	"Atp8b2:NM_001368650:exon16:c.T1773C:p.P591P,Atp8b2:NM_001081182:exon17:c.T1716C:p.P572P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9508328	GAG	synonymous	NA	NA	NA	NA
M7	chr3	90000921	12A2p6	cell line	sgMsh2	90000921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	106	141	28	0.19858156	exonic	Ubap2l	nonsynonymous SNV	"Ubap2l:NM_001357307:exon27:c.A3272G:p.N1091S,Ubap2l:NM_001165983:exon28:c.A3314G:p.N1105S,Ubap2l:NM_001165984:exon28:c.A3299G:p.N1100S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	GTT	nonsynonymous	AGCTGT	12	AGCTGTAGCTGT	NA
M7	chr3	90175918	12A2p6	cell line	sgMsh2	90175918	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	225	3	1	0.333333333	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon23:c.T3176C:p.I1059T	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr3	90232503	12A2p6	cell line	sgMsh2	90232503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	274	184	39	0.211956522	exonic	Jtb	nonsynonymous SNV	Jtb:NM_206924:exon3:c.T196C:p.F66L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	3.66E-08	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	90458078	12A2p6	cell line	sgMsh2	90458078	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	67	1	0	0	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon13:c.T2074G:p.F692V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9886891	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	90464933	12A2p6	cell line	sgMsh2	90464933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	40	0	0	NA	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon1:c.C571T:p.P191S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9796905	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	90542414	12A2p6	cell line	sgMsh2	90542414	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	83	624	40	0.064102564	exonic	S100a16	nonsynonymous SNV	"S100a16:NM_001356605:exon3:c.C203G:p.A68G,S100a16:NM_001356606:exon3:c.C203G:p.A68G,S100a16:NM_001356609:exon3:c.C203G:p.A68G,S100a16:NM_001356610:exon3:c.C203G:p.A68G,S100a16:NM_026416:exon3:c.C203G:p.A68G,S100a16:NM_001356607:exon4:c.C203G:p.A68G,S100a16:NM_001356608:exon4:c.C203G:p.A68G"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.437600546	2	0.9946573	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr3	92031460	12A2p6	cell line	sgMsh2	92031460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	70	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon7:c.C941T:p.T314I	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8860747	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr3	92433547	12A2p6	cell line	sgMsh2	92433547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	161	0	0	NA	exonic	Sprr2k	nonsynonymous SNV	Sprr2k:NM_011477:exon2:c.A203G:p.K68R	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999784	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	93214656	12A2p6	cell line	sgMsh2	93214656	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	352	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon6:c.G4132T:p.G1378W	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9999826	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	93443526	12A2p6	cell line	sgMsh2	93443526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	140	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A272G:p.Q91R	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	93826351	12A2p6	cell line	sgMsh2	93826351	A	G	SNV	Mutect2;Vardict	2	0.036	296	0	0	NA	exonic	Tdpoz3	nonsynonymous SNV	Tdpoz3:NM_207271:exon1:c.A332G:p.Q111R	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr3	94486600	12A2p6	cell line	sgMsh2	94486600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	37	0	0	NA	exonic	Celf3	nonsynonymous SNV	"Celf3:NM_001379256:exon5:c.C335T:p.A112V,Celf3:NM_001289613:exon6:c.C563T:p.A188V,Celf3:NM_001357784:exon6:c.C563T:p.A188V,Celf3:NM_172434:exon6:c.C560T:p.A187V,Celf3:NM_001289616:exon7:c.C332T:p.A111V,Celf3:NM_001289620:exon7:c.C332T:p.A111V,Celf3:NM_001357785:exon7:c.C335T:p.A112V,Celf3:NM_001357786:exon7:c.C335T:p.A112V,Celf3:NM_001379249:exon7:c.C563T:p.A188V,Celf3:NM_001379250:exon7:c.C560T:p.A187V,Celf3:NM_001379251:exon7:c.C332T:p.A111V,Celf3:NM_001379252:exon7:c.C335T:p.A112V,Celf3:NM_001379253:exon7:c.C335T:p.A112V,Celf3:NM_001379254:exon7:c.C332T:p.A111V,Celf3:NM_001379255:exon7:c.C335T:p.A112V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9717354	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	171	245	55	0.224489796	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	95140536	12A2p6	cell line	sgMsh2	95140536	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	117	0	0	NA	exonic	Tnfaip8l2	nonsynonymous SNV	Tnfaip8l2:NM_027206:exon2:c.C15G:p.S5R	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	95263687	12A2p6	cell line	sgMsh2	95263687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	86	62	15	0.241935484	exonic	Prune1	nonsynonymous SNV	Prune1:NM_173347:exon4:c.T425C:p.V142A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	95324761	12A2p6	cell line	sgMsh2	95324761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	93	79	18	0.227848101	exonic	Setdb1	nonsynonymous SNV	"Setdb1:NM_001163641:exon20:c.A3589G:p.T1197A,Setdb1:NM_001163642:exon20:c.A3586G:p.T1196A,Setdb1:NM_018877:exon20:c.A3589G:p.T1197A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M7	chr3	95679660	12A2p6	cell line	sgMsh2	95679660	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	82	3	0	0	exonic	Adamtsl4	synonymous SNV	"Adamtsl4:NM_001301705:exon14:c.G2379A:p.P793P,Adamtsl4:NM_144899:exon14:c.G2379A:p.P793P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.7133277	GCG	synonymous	GGC	8	GGCGGCGG	NA
M7	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	111	1	0	0	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	96188350	12A2p6	cell line	sgMsh2	96188350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	123	1	0	0	exonic	Sv2a	synonymous SNV	Sv2a:NM_022030:exon5:c.T981C:p.A327A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.852857	CTT	synonymous	NA	NA	NA	NA
M7	chr3	96239877	12A2p6	cell line	sgMsh2	96239877	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.333	13	3	1	0.333333333	exonic	H2ac18;H2ac19	nonsynonymous SNV	"H2ac18:NM_013549:exon1:c.A374G:p.H125R,H2ac19:NM_178212:exon1:c.A374G:p.H125R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9124567	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr3	96440748	12A2p6	cell line	sgMsh2	96440748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	74	0	0	NA	exonic	BC107364	nonsynonymous SNV	"BC107364:NM_001256180:exon3:c.A224G:p.N75S,BC107364:NM_001256181:exon3:c.A224G:p.N75S"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9953595	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	96526589	12A2p6	cell line	sgMsh2	96526589	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	39	0	0	NA	exonic	Hjv	synonymous SNV	Hjv:NM_027126:exon2:c.C75T:p.L25L	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9785304	TCC	synonymous	CTG	8	CTGCTGCT	NA
M7	chr3	97210381	12A2p6	cell line	sgMsh2	97210381	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.282	64	20	0	0	exonic	Bcl9	frameshift insertion	Bcl9:NM_029933:exon8:c.995dupC:p.P333Tfs*7	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTG	frameshift	G	5	GGGGG	1
M7	chr3	99939331	12A2p6	cell line	sgMsh2	99939331	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.196	117	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon2:c.G170A:p.R57Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9896207	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr3	100161037	12A2p6	cell line	sgMsh2	100161037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	155	73	27	0.369863014	exonic	Wdr3	nonsynonymous SNV	Wdr3:NM_175552:exon2:c.T154A:p.L52I	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	100962809	12A2p6	cell line	sgMsh2	100962809	G	T	SNV	Mutect2;Vardict	2	0.062	64	24	1	0.041666667	exonic	Ttf2	nonsynonymous SNV	Ttf2:NM_001013026:exon5:c.C947A:p.P316H	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.282617019	3	0.985244	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	101012155	12A2p6	cell line	sgMsh2	101012155	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	150	1	0	0	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon6:c.C1642G:p.P548A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.6311576	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	101056312	12A2p6	cell line	sgMsh2	101056312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	84	111	28	0.252252252	exonic	Ptgfrn	synonymous SNV	Ptgfrn:NM_011197:exon6:c.T1983C:p.S661S	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9922904	GAG	synonymous	NA	NA	NA	NA
M7	chr3	102520427	12A2p6	cell line	sgMsh2	102520427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	86	56	15	0.267857143	exonic	Ngf	nonsynonymous SNV	"Ngf:NM_001112698:exon3:c.A305C:p.D102A,Ngf:NM_013609:exon4:c.A503C:p.D168A"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9899211	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	102758173	12A2p6	cell line	sgMsh2	102758173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	121	15	0.123966942	exonic	Tspan2	nonsynonymous SNV	"Tspan2:NM_001243132:exon4:c.T275C:p.L92S,Tspan2:NM_027533:exon4:c.T287C:p.L96S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9999973	TTG	nonsynonymous	CTGT	8	CTGTCTGT	NA
M7	chr3	103056908	12A2p6	cell line	sgMsh2	103056908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	234	1244	281	0.225884244	exonic	Csde1	nonsynonymous SNV	"Csde1:NM_001310693:exon18:c.T1982C:p.I661T,Csde1:NM_001161854:exon19:c.T2279C:p.I760T,Csde1:NM_144901:exon20:c.T2372C:p.I791T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999997	ATC	nonsynonymous	AGAA	11	AGAAAGAAAGA	NA
M7	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	67	24	9	0.375	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr3	103764542	12A2p6	cell line	sgMsh2	103764542	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	72	160	32	0.2	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon4:c.T1240C:p.Y414H,Hipk1:NM_001301306:exon4:c.T1240C:p.Y414H,Hipk1:NM_010432:exon4:c.T1240C:p.Y414H"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	103981932	12A2p6	cell line	sgMsh2	103981932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	265	40	9	0.225	exonic	Phtf1	nonsynonymous SNV	"Phtf1:NM_001163467:exon4:c.T149C:p.L50S,Phtf1:NM_001163468:exon4:c.T149C:p.L50S,Phtf1:NM_001163469:exon4:c.T149C:p.L50S,Phtf1:NM_013629:exon4:c.T149C:p.L50S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9999997	TTG	nonsynonymous	TTGA	9	TTGATTGAT	NA
M7	chr3	104054483	12A2p6	cell line	sgMsh2	104054483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	71	72	15	0.208333333	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon9:c.G1228A:p.V410I,Magi3:NM_133853:exon9:c.G1228A:p.V410I"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.732016	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	106	97	32	0.329896907	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr3	105716778	12A2p6	cell line	sgMsh2	105716778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	84	0	0	NA	exonic	Inka2	nonsynonymous SNV	"Inka2:NM_001163356:exon2:c.A410G:p.Q137R,Inka2:NM_175398:exon2:c.A467G:p.Q156R"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9634692	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	105951690	12A2p6	cell line	sgMsh2	105951690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	109	446	88	0.197309417	exonic	Atp5pb	synonymous SNV	"Atp5pb:NM_009725:exon5:c.A414G:p.V138V,Atp5pb:NM_001304719:exon6:c.A339G:p.V113V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9990893	TTA	synonymous	NA	NA	NA	NA
M7	chr3	106128164	12A2p6	cell line	sgMsh2	106128164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	229	0	0	NA	exonic	Chia1	synonymous SNV	Chia1:NM_023186:exon6:c.T495G:p.A165A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.551559022	2	0.9999999	CTT	synonymous	NA	NA	NA	NA
M7	chr3	106164811	12A2p6	cell line	sgMsh2	106164811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	564	0	0	NA	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon2:c.T47C:p.V16A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.496858954	2	1	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	106822035	12A2p6	cell line	sgMsh2	106822035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	177	0	0	NA	exonic	Olfr266	nonsynonymous SNV	Olfr266:NM_146489:exon1:c.A523C:p.N175H	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9388005	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	107942356	12A2p6	cell line	sgMsh2	107942356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	264	0	0	NA	exonic	Gstm6	nonsynonymous SNV	"Gstm6:NM_001379508:exon3:c.A134G:p.Y45C,Gstm6:NM_001379505:exon4:c.A278G:p.Y93C,Gstm6:NM_001379506:exon4:c.A236G:p.Y79C,Gstm6:NM_008184:exon4:c.A236G:p.Y79C,Gstm6:NM_001379507:exon5:c.A230G:p.Y77C,Gstm6:NM_001379504:exon6:c.A341G:p.Y114C"	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	108412880	12A2p6	cell line	sgMsh2	108412880	A	G	SNV	Mutect2;Vardict	2	0.046	93	6	0	0	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon1:c.T2615C:p.I872T,Celsr2:NM_017392:exon1:c.T2615C:p.I872T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.209683595	3	0.9999954	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	108464426	12A2p6	cell line	sgMsh2	108464426	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	44	3	0	0	exonic	Elapor1	frameshift deletion	"Elapor1:NM_001033304:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001358065:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001346518:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358063:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358064:exon16:c.2131delA:p.M711Wfs*37"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr3	108663623	12A2p6	cell line	sgMsh2	108663623	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	124	77	19	0.246753247	exonic	Clcc1	nonsynonymous SNV	"Clcc1:NM_001177770:exon4:c.C346A:p.L116I,Clcc1:NM_001355632:exon4:c.C331A:p.L111I,Clcc1:NM_145543:exon4:c.C331A:p.L111I,Clcc1:NM_001177771:exon5:c.C331A:p.L111I"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	108668177	12A2p6	cell line	sgMsh2	108668177	T	C	SNV	Mutect2;Vardict	2	0.035	134	37	1	0.027027027	exonic	Clcc1	nonsynonymous SNV	"Clcc1:NM_001177770:exon5:c.T569C:p.V190A,Clcc1:NM_001355632:exon5:c.T554C:p.V185A,Clcc1:NM_145543:exon5:c.T554C:p.V185A,Clcc1:NM_001177771:exon6:c.T554C:p.V185A"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1.04E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr3	108883558	12A2p6	cell line	sgMsh2	108883558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	191	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon3:c.A151G:p.T51A,Fndc7:NM_177091:exon3:c.A151G:p.T51A"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999961	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	109628125	12A2p6	cell line	sgMsh2	109628125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	9	0	0	exonic	Vav3	synonymous SNV	"Vav3:NM_146139:exon3:c.T192G:p.T64T,Vav3:NM_001378987:exon20:c.T1872G:p.T624T,Vav3:NM_020505:exon20:c.T1872G:p.T624T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.999028	CTG	synonymous	NA	NA	NA	NA
M7	chr3	114124209	12A2p6	cell line	sgMsh2	114124209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon27:c.C2270T:p.P757L	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	115122603	12A2p6	cell line	sgMsh2	115122603	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	147	0	0	NA	exonic	Olfm3	nonsynonymous SNV	"Olfm3:NM_001286750:exon6:c.G1084T:p.G362W,Olfm3:NM_153157:exon6:c.G1183T:p.G395W,Olfm3:NM_153458:exon6:c.G1123T:p.G375W"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.196008578	3	1.40E-09	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	116124476	12A2p6	cell line	sgMsh2	116124476	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	164	259	68	0.262548263	exonic	Vcam1	nonsynonymous SNV	Vcam1:NM_011693:exon4:c.A835T:p.I279F	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999817	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr3	116543792	12A2p6	cell line	sgMsh2	116543792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	146	39	8	0.205128205	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon7:c.T421C:p.F141L,Dbt:NM_010022:exon8:c.T964C:p.F322L"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	116605233	12A2p6	cell line	sgMsh2	116605233	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	96	15	3	0.2	exonic	Sass6	frameshift deletion	"Sass6:NM_001289571:exon2:c.58delT:p.L22Cfs*13,Sass6:NM_028349:exon3:c.163delT:p.L57Cfs*13"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr3	116895535	12A2p6	cell line	sgMsh2	116895535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	202	101	11	0.108910891	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.T1054C:p.Y352H,Frrs1:NM_009146:exon10:c.T1054C:p.Y352H"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999979	ATA	nonsynonymous	A	5	AAAAA	NA
M7	chr3	119761719	12A2p6	cell line	sgMsh2	119761719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	179	26	8	0.307692308	exonic	Ptbp2	synonymous SNV	"Ptbp2:NM_001310711:exon3:c.T99C:p.S33S,Ptbp2:NM_019550:exon3:c.T99C:p.S33S"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999922	CAC	synonymous	NA	NA	NA	NA
M7	chr3	121729520	12A2p6	cell line	sgMsh2	121729520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	31	197	53	0.269035533	exonic	F3	synonymous SNV	F3:NM_010171:exon3:c.T378C:p.F126F	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.966611	TTA	synonymous	NA	NA	NA	NA
M7	chr3	121765035	12A2p6	cell line	sgMsh2	121765035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	134	192	56	0.291666667	exonic	Abcd3	nonsynonymous SNV	"Abcd3:NM_001355756:exon21:c.A1592G:p.D531G,Abcd3:NM_008991:exon21:c.A1811G:p.D604G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	ATC	nonsynonymous	TCCACA	12	TCCACATCCACA	NA
M7	chr3	122148996	12A2p6	cell line	sgMsh2	122148996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	164	0	0	NA	exonic	Abca4	nonsynonymous SNV	Abca4:NM_007378:exon36:c.T5137C:p.F1713L	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9770953	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	123112816	12A2p6	cell line	sgMsh2	123112816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	193	0	0	NA	exonic	Synpo2	synonymous SNV	Synpo2:NM_080451:exon4:c.A2850G:p.K950K	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.774917634	2	0.5719397	GTT	synonymous	NA	NA	NA	NA
M7	chr3	125438107	12A2p6	cell line	sgMsh2	125438107	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	184	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.G324T:p.M108I	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999941	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr3	125438148	12A2p6	cell line	sgMsh2	125438148	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	185	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.A365G:p.D122G	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.209683595	3	1.01E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	125867481	12A2p6	cell line	sgMsh2	125867481	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	174	0	0	NA	exonic	Ugt8a	nonsynonymous SNV	Ugt8a:NM_011674:exon6:c.A1361G:p.H454R	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.200566917	3	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr3	126943351	12A2p6	cell line	sgMsh2	126943351	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	141	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001327939:exon37:c.C8622T:p.S2874S,Ank2:NM_001327938:exon39:c.C8868T:p.S2956S"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	AGG	synonymous	NA	NA	NA	NA
M7	chr3	126981840	12A2p6	cell line	sgMsh2	126981840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	165	1	0	0	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_178655:exon4:c.A139C:p.N47H,Ank2:NM_001327938:exon24:c.A2641C:p.N881H,Ank2:NM_001327939:exon24:c.A2491C:p.N831H"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999827	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr3	127815622	12A2p6	cell line	sgMsh2	127815622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	60	176	55	0.3125	exonic	Ap1ar	nonsynonymous SNV	Ap1ar:NM_145964:exon6:c.G349A:p.A117T	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9162274	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr3	129281642	12A2p6	cell line	sgMsh2	129281642	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	128	0	0	NA	exonic	Enpep	nonsynonymous SNV	Enpep:NM_007934:exon14:c.T2026C:p.S676P	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9952861	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr3	129331941	12A2p6	cell line	sgMsh2	129331941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	76	0	0	NA	exonic	Enpep	nonsynonymous SNV	Enpep:NM_007934:exon1:c.A541G:p.T181A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.879415	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr3	129809029	12A2p6	cell line	sgMsh2	129809029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	67	0	0	NA	exonic	Rrh	nonsynonymous SNV	Rrh:NM_009102:exon7:c.T917C:p.L306S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr3	129999552	12A2p6	cell line	sgMsh2	129999552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	67	90	27	0.3	exonic	Sec24b	synonymous SNV	Sec24b:NM_207209:exon11:c.T2035C:p.L679L	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	AAA	synonymous	NA	NA	NA	NA
M7	chr3	130033850	12A2p6	cell line	sgMsh2	130033850	-	G	Insertion	Strelka2;Vardict	2	0.1858	113	31	0	0	exonic	Sec24b	frameshift insertion	Sec24b:NM_207209:exon3:c.998dupC:p.E334Rfs*5	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.846939391	NA	NA	CTG	frameshift	G	8	GGGGGGGG	1
M7	chr3	132886004	12A2p6	cell line	sgMsh2	132886004	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	67	380	47	0.123684211	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1354C:p.Y452H,Npnt:NM_001287103:exon11:c.T1042C:p.Y348H,Npnt:NM_001287102:exon12:c.T1447C:p.Y483H,Npnt:NM_033525:exon12:c.T1405C:p.Y469H,Npnt:NM_001287101:exon13:c.T1498C:p.Y500H"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.692867532	2	0.663095	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	133485665	12A2p6	cell line	sgMsh2	133485665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	169	18	6	0.333333333	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.A3007G:p.T1003A,Tet2:NM_001346736:exon3:c.A3007G:p.T1003A"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	133486751	12A2p6	cell line	sgMsh2	133486751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	181	15	2	0.133333333	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.T1921C:p.Y641H,Tet2:NM_001346736:exon3:c.T1921C:p.Y641H"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9998883	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	134829477	12A2p6	cell line	sgMsh2	134829477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	82	0	0	NA	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.T205C:p.S69P	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr3	134829585	12A2p6	cell line	sgMsh2	134829585	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	150	2	0	0	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.A313G:p.T105A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.223358612	3	9.57E-09	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	138223970	12A2p6	cell line	sgMsh2	138223970	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	151	0	0	NA	exonic	Adh7	nonsynonymous SNV	Adh7:NM_009626:exon5:c.C406A:p.P136T	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	0.9768925	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr3	138224083	12A2p6	cell line	sgMsh2	138224083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	61	1	1	1	exonic	Adh7	synonymous SNV	Adh7:NM_009626:exon5:c.C519T:p.G173G	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9107659	GCT	synonymous	NA	NA	NA	NA
M7	chr3	138227914	12A2p6	cell line	sgMsh2	138227914	T	C	SNV	Mutect2;Vardict	2	0.029	232	2	0	0	exonic	Adh7	synonymous SNV	Adh7:NM_009626:exon7:c.T831C:p.D277D	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	ATG	synonymous	NA	NA	NA	NA
M7	chr3	138228811	12A2p6	cell line	sgMsh2	138228811	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	123	1	0	0	exonic	Adh7	nonsynonymous SNV	Adh7:NM_009626:exon8:c.G994T:p.V332L	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9910651	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr3	138282520	12A2p6	cell line	sgMsh2	138282520	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	225	1	1	1	exonic	Adh1	nonsynonymous SNV	Adh1:NM_007409:exon4:c.G344A:p.S115N	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.8928954	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr3	138454726	12A2p6	cell line	sgMsh2	138454726	A	-	Deletion	Mutect2;Vardict	2	0.131	258	397	0	0	exonic	Adh5	frameshift deletion	"Adh5:NM_001288578:exon8:c.654delA:p.V220Lfs*4,Adh5:NM_007410:exon8:c.1020delA:p.V342Lfs*4"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.597142412	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr3	138480720	12A2p6	cell line	sgMsh2	138480720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	284	111	26	0.234234234	exonic	Metap1	nonsynonymous SNV	Metap1:NM_175224:exon3:c.T247C:p.Y83H	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	2.12E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	141465774	12A2p6	cell line	sgMsh2	141465774	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	107	0	0	NA	exonic	Unc5c	stopgain	"Unc5c:NM_001293561:exon1:c.C61T:p.Q21X,Unc5c:NM_009472:exon1:c.C61T:p.Q21X"	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr3	144952971	12A2p6	cell line	sgMsh2	144952971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	167	0	0	NA	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon14:c.T2482C:p.F828L	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999846	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	144963643	12A2p6	cell line	sgMsh2	144963643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	225	0	0	NA	exonic	Clca4a	synonymous SNV	Clca4a:NM_207208:exon7:c.T1146C:p.N382N	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999994	CAT	synonymous	NA	NA	NA	NA
M7	chr3	145889211	12A2p6	cell line	sgMsh2	145889211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	76	10	2	0.2	exonic	Ddah1	nonsynonymous SNV	Ddah1:NM_026993:exon5:c.A725G:p.Y242C	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	145930477	12A2p6	cell line	sgMsh2	145930477	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	82	146	54	0.369863014	exonic	Bcl10	frameshift deletion	Bcl10:NM_009740:exon2:c.129delA:p.I46Yfs*1	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7	chr3	145930531	12A2p6	cell line	sgMsh2	145930531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	94	146	30	0.205479452	exonic	Bcl10	nonsynonymous SNV	Bcl10:NM_009740:exon2:c.T183A:p.S61R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr3	146597208	12A2p6	cell line	sgMsh2	146597208	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	343	0	0	NA	exonic	Uox	frameshift deletion	Uox:NM_009474:exon1:c.5delC:p.H3Ifs*46	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.907109466	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr3	146650711	12A2p6	cell line	sgMsh2	146650711	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	158	0	0	NA	exonic	4930503B20Rik	frameshift deletion	4930503B20Rik:NM_029144:exon1:c.441delC:p.I148Sfs*27	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.948134517	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7	chr3	148837574	12A2p6	cell line	sgMsh2	148837574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	140	21	0	0	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon13:c.G2513T:p.R838M	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr3	148859015	12A2p6	cell line	sgMsh2	148859015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	163	25	0	0	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon5:c.T928C:p.Y310H	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999807	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	152102697	12A2p6	cell line	sgMsh2	152102697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	213	21	4	0.19047619	exonic	Gipc2	nonsynonymous SNV	Gipc2:NM_016867:exon5:c.T718C:p.S240P	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999989	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	152226131	12A2p6	cell line	sgMsh2	152226131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	73	232	51	0.219827586	exonic	Fubp1	nonsynonymous SNV	"Fubp1:NM_001355369:exon17:c.A1616G:p.H539R,Fubp1:NM_001355370:exon17:c.A1613G:p.H538R,Fubp1:NM_001355371:exon17:c.A1616G:p.H539R,Fubp1:NM_001355372:exon17:c.A1616G:p.H539R,Fubp1:NM_001355373:exon17:c.A1616G:p.H539R,Fubp1:NM_001355374:exon17:c.A1613G:p.H538R,Fubp1:NM_057172:exon17:c.A1613G:p.H538R,Fubp1:NM_001355366:exon18:c.A1679G:p.H560R,Fubp1:NM_001355367:exon18:c.A1676G:p.H559R,Fubp1:NM_001355368:exon18:c.A1679G:p.H560R"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	152278905	12A2p6	cell line	sgMsh2	152278905	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	133	11	3	0.272727273	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon13:c.T1380G:p.C460W,Miga1:NM_174868:exon15:c.T1572G:p.C524W"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr3	152785494	12A2p6	cell line	sgMsh2	152785494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	140	50	17	0.34	exonic	Pigk	synonymous SNV	"Pigk:NM_025662:exon11:c.T1170C:p.H390H,Pigk:NM_178016:exon12:c.T1311C:p.H437H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	ATA	synonymous	NA	NA	NA	NA
M7	chr3	154622253	12A2p6	cell line	sgMsh2	154622253	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	50	102	31	0.303921569	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon9:c.T991G:p.L331V,Cryz:NM_001357673:exon9:c.T991G:p.L331V,Cryz:NM_001357674:exon9:c.T991G:p.L331V,Cryz:NM_001357675:exon9:c.T991G:p.L331V,Cryz:NM_001357676:exon9:c.T991G:p.L331V,Cryz:NM_009968:exon9:c.T991G:p.L331V"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9883813	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	155037446	12A2p6	cell line	sgMsh2	155037446	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	136	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon4:c.T275C:p.L92P	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.241591968	3	0.9999996	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	155086812	12A2p6	cell line	sgMsh2	155086812	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	142	25	5	0.2	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.G1577A:p.S526N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	ACT	nonsynonymous	ACTC	9	ACTCACTCA	NA
M7	chr3	155187768	12A2p6	cell line	sgMsh2	155187768	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	104	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon7:c.1105delG:p.A370Qfs*2	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M7	chr3	157146312	12A2p6	cell line	sgMsh2	157146312	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	126	0	0	NA	exonic	Negr1	synonymous SNV	"Negr1:NM_001039094:exon5:c.G750A:p.E250E,Negr1:NM_177274:exon5:c.G750A:p.E250E"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9563151	AGT	synonymous	NA	NA	NA	NA
M7	chr3	157546722	12A2p6	cell line	sgMsh2	157546722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	98	186	38	0.204301075	exonic	Zranb2	nonsynonymous SNV	"Zranb2:NM_001355381:exon9:c.G770A:p.S257N,Zranb2:NM_017381:exon10:c.G977A:p.S326N"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	AGT	nonsynonymous	GTTCAA	12	GTTCAAGTTCAA	NA
M7	chr3	158026779	12A2p6	cell line	sgMsh2	158026779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	117	184	44	0.239130435	exonic	Srsf11	synonymous SNV	"Srsf11:NM_001093753:exon2:c.C262T:p.L88L,Srsf11:NM_001379533:exon2:c.C262T:p.L88L,Srsf11:NM_001093752:exon3:c.C367T:p.L123L,Srsf11:NM_001379531:exon3:c.C367T:p.L123L,Srsf11:NM_001379532:exon3:c.C367T:p.L123L"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.973693	AGA	synonymous	NA	NA	NA	NA
M7	chr3	158031539	12A2p6	cell line	sgMsh2	158031539	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	31	44	13	0.295454545	exonic	Srsf11	nonsynonymous SNV	"Srsf11:NM_001093753:exon1:c.A95C:p.N32T,Srsf11:NM_001379533:exon1:c.A95C:p.N32T,Srsf11:NM_001093752:exon2:c.A200C:p.N67T,Srsf11:NM_001379531:exon2:c.A200C:p.N67T,Srsf11:NM_001379532:exon2:c.A200C:p.N67T"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.966611	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr3	158054594	12A2p6	cell line	sgMsh2	158054594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	192	94	19	0.20212766	exonic	Lrrc40	synonymous SNV	"Lrrc40:NM_001289525:exon6:c.T337C:p.L113L,Lrrc40:NM_001359763:exon7:c.T622C:p.L208L,Lrrc40:NM_001289524:exon8:c.T337C:p.L113L,Lrrc40:NM_024194:exon8:c.T991C:p.L331L"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9999911	ATT	synonymous	NA	NA	NA	NA
M7	chr3	158179828	12A2p6	cell line	sgMsh2	158179828	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	150	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon15:c.C1357T:p.P453S,Lrrc7:NM_001370782:exon15:c.C1357T:p.P453S,Lrrc7:NM_001081358:exon16:c.C1258T:p.P420S,Lrrc7:NM_001291452:exon16:c.C1258T:p.P420S,Lrrc7:NM_001291453:exon16:c.C1258T:p.P420S"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999596	GGG	nonsynonymous	TGGG	8	TGGGTGGG	NA
M7	chr3	159498430	12A2p6	cell line	sgMsh2	159498430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	118	1	0	0	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon2:c.A115G:p.K39E,Depdc1a:NM_001172093:exon2:c.A115G:p.K39E,Depdc1a:NM_029523:exon2:c.A115G:p.K39E"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	2	1	1	0.9997518	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr3	159515518	12A2p6	cell line	sgMsh2	159515518	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	164	2	0	0	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A485T:p.K162M,Depdc1a:NM_001172093:exon4:c.A485T:p.K162M,Depdc1a:NM_029523:exon4:c.A485T:p.K162M"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999817	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr3	159515569	12A2p6	cell line	sgMsh2	159515569	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	193	2	0	0	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A536C:p.N179T,Depdc1a:NM_001172093:exon4:c.A536C:p.N179T,Depdc1a:NM_029523:exon4:c.A536C:p.N179T"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9737241	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	4076581	12A2p6	cell line	sgMsh2	4076581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	133	0	0	NA	exonic	Sdr16c6	nonsynonymous SNV	Sdr16c6:NM_001080710:exon2:c.A317C:p.D106A	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9998377	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	6273820	12A2p6	cell line	sgMsh2	6273820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	201	0	0	NA	exonic	Cyp7a1	nonsynonymous SNV	Cyp7a1:NM_007824:exon2:c.G85A:p.V29I	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999978	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr4	8801426	12A2p6	cell line	sgMsh2	8801426	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	40	12	4	0.333333333	exonic	Chd7	synonymous SNV	Chd7:NM_001277149:exon4:c.G2169A:p.P723P	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9667699	CGT	synonymous	C	5	CCCCC	NA
M7	chr4	8833809	12A2p6	cell line	sgMsh2	8833809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	114	35	7	0.2	exonic	Chd7	nonsynonymous SNV	Chd7:NM_001277149:exon15:c.T3562A:p.L1188M	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	8844694	12A2p6	cell line	sgMsh2	8844694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	87	12	4	0.333333333	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon20:c.A1100G:p.K367R,Chd7:NM_001277149:exon21:c.A4802G:p.K1601R"	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	9622147	12A2p6	cell line	sgMsh2	9622147	C	-	Deletion	Mutect2;Vardict	2	0.062	81	1	0	0	exonic	Asph	frameshift deletion	"Asph:NM_001177855:exon5:c.471delG:p.K158Rfs*50,Asph:NM_133723:exon5:c.357delG:p.K120Rfs*50"	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.282617019	NA	NA	TCC	frameshift	NA	NA	NA	-1
M7	chr4	11165096	12A2p6	cell line	sgMsh2	11165096	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	155	35	8	0.228571429	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.G119A:p.C40Y,Trp53inp1:NM_021897:exon3:c.G119A:p.C40Y"	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	11165105	12A2p6	cell line	sgMsh2	11165105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	156	39	9	0.230769231	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.T128G:p.F43C,Trp53inp1:NM_021897:exon3:c.T128G:p.F43C"	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999713	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	11713593	12A2p6	cell line	sgMsh2	11713593	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	83	114	34	0.298245614	exonic	Gem	nonsynonymous SNV	Gem:NM_010276:exon5:c.A728G:p.D243G	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8437326	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	12146151	12A2p6	cell line	sgMsh2	12146151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	178	14	4	0.285714286	exonic	Rbm12b1	nonsynonymous SNV	Rbm12b1:NM_028226:exon3:c.T2122C:p.F708L	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999917	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	12164156	12A2p6	cell line	sgMsh2	12164156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	174	172	11	0.063953488	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon5:c.A670G:p.T224A,Cibar1:NM_026558:exon5:c.A682G:p.T228A"	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9872978	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	12164194	12A2p6	cell line	sgMsh2	12164194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	119	72	2	0.027777778	exonic;splicing	Cibar1;Cibar1	nonsynonymous SNV	Cibar1:NM_026558:exon5:c.A644G:p.Q215R	4qA1	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.959469	CTG	nonsynonymous	A	5	AAAAA	NA
M7	chr4	15901130	12A2p6	cell line	sgMsh2	15901130	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	206	0	0	NA	exonic	Calb1	synonymous SNV	Calb1:NM_009788:exon9:c.G588A:p.E196E	4qA2	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	AGT	synonymous	NA	NA	NA	NA
M7	chr4	15991206	12A2p6	cell line	sgMsh2	15991206	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	257	28	3	0.107142857	exonic	Nbn	nonsynonymous SNV	Nbn:NM_013752:exon15:c.G2203A:p.E735K	4qA2	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr4	18051833	12A2p6	cell line	sgMsh2	18051833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	206	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon5:c.A821G:p.D274G,Mmp16:NM_001379518:exon6:c.A821G:p.D274G,Mmp16:NM_001379519:exon6:c.A821G:p.D274G"	4qA3	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999983	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	121	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	2	1	1	0.9997907	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	21678296	12A2p6	cell line	sgMsh2	21678296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	56	0	0	NA	exonic	Prdm13	synonymous SNV	Prdm13:NM_001080771:exon4:c.T2193C:p.S731S	4qA3	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	1	1	0.9917055	CAC	synonymous	NA	NA	NA	NA
M7	chr4	21732295	12A2p6	cell line	sgMsh2	21732295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	153	53	13	0.245283019	exonic	Ccnc	nonsynonymous SNV	"Ccnc:NM_001122982:exon3:c.T217C:p.Y73H,Ccnc:NM_001290420:exon3:c.T217C:p.Y73H,Ccnc:NM_001290422:exon3:c.T217C:p.Y73H,Ccnc:NM_016746:exon3:c.T217C:p.Y73H"	4qA3	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9990022	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	21873968	12A2p6	cell line	sgMsh2	21873968	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	34	43	13	0.302325581	exonic	Pnisr	synonymous SNV	"Pnisr:NM_001369189:exon11:c.C1710T:p.R570R,Pnisr:NM_001369190:exon11:c.C984T:p.R328R,Pnisr:NM_001369191:exon11:c.C984T:p.R328R,Pnisr:NM_025669:exon11:c.C1710T:p.R570R"	4qA3	chr4-3172993-21993871	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.8553148	GCA	synonymous	AGCAGG	15	AGCAGGAGCAGGAGC	NA
M7	chr4	24649985	12A2p6	cell line	sgMsh2	24649985	T	C	SNV	Mutect2;Vardict	2	0.04	114	0	0	NA	exonic	Klhl32	synonymous SNV	"Klhl32:NM_001033531:exon6:c.A810G:p.K270K,Klhl32:NM_001355618:exon6:c.A204G:p.K68K,Klhl32:NM_001163020:exon7:c.A909G:p.K303K"	4qA3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.182333561	3	1.73E-08	CTT	synonymous	NA	NA	NA	NA
M7	chr4	25008109	12A2p6	cell line	sgMsh2	25008109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	99	0	0	NA	exonic	Gpr63	nonsynonymous SNV	"Gpr63:NM_001379626:exon2:c.A832G:p.N278D,Gpr63:NM_001379627:exon2:c.A832G:p.N278D,Gpr63:NM_030733:exon2:c.A832G:p.N278D"	4qA3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9992711	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr4	25207152	12A2p6	cell line	sgMsh2	25207152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	67	0	0	NA	exonic	Fhl5	synonymous SNV	"Fhl5:NM_001355498:exon5:c.T615C:p.D205D,Fhl5:NM_021318:exon5:c.T615C:p.D205D,Fhl5:NM_001379528:exon6:c.T615C:p.D205D"	4qA3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9955388	CAT	synonymous	NA	NA	NA	NA
M7	chr4	25250638	12A2p6	cell line	sgMsh2	25250638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	99	31	7	0.225806452	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon19:c.A2214G:p.L738L,Ufl1:NM_026194:exon19:c.A2214G:p.L738L"	4qA3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9992711	CTA	synonymous	TGAC	9	TGACTGACT	NA
M7	chr4	31979762	12A2p6	cell line	sgMsh2	31979762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	59	40	16	0.4	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_009316:exon5:c.T370C:p.Y124H,Map3k7:NM_172688:exon5:c.T370C:p.Y124H"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.829617702	1	0.8788338	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	32644256	12A2p6	cell line	sgMsh2	32644256	A	-	Deletion	Strelka2;Vardict	2	0.3125	64	32	6	0.1875	exonic	Casp8ap2	frameshift deletion	"Casp8ap2:NM_001122978:exon8:c.3328delA:p.K1112Nfs*5,Casp8ap2:NM_011997:exon8:c.3328delA:p.K1112Nfs*5"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M7	chr4	32722967	12A2p6	cell line	sgMsh2	32722967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	79	6	3	0.5	exonic	Mdn1	synonymous SNV	Mdn1:NM_001081392:exon48:c.A7281G:p.T2427T	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9977367	CAG	synonymous	NA	NA	NA	NA
M7	chr4	33944549	12A2p6	cell line	sgMsh2	33944549	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	126	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T936G:p.R312R,Cnr1:NM_001365881:exon2:c.T936G:p.R312R,Cnr1:NM_007726:exon2:c.T936G:p.R312R,Cnr1:NM_001355021:exon6:c.T936G:p.R312R"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998424	GTG	synonymous	NA	NA	NA	NA
M7	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	103	57	17	0.298245614	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr4	34826847	12A2p6	cell line	sgMsh2	34826847	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	66	32	7	0.21875	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon5:c.T581C:p.I194T	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9952797	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	35709180	12A2p6	cell line	sgMsh2	35709180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	155	0	0	NA	exonic	Lingo2	nonsynonymous SNV	"Lingo2:NM_001166001:exon2:c.C799T:p.L267F,Lingo2:NM_175516:exon3:c.C799T:p.L267F,Lingo2:NM_001165999:exon8:c.C799T:p.L267F,Lingo2:NM_001166000:exon9:c.C799T:p.L267F"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999696	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr4	35709499	12A2p6	cell line	sgMsh2	35709499	-	A	Insertion	Mutect2;Vardict	2	0.04	160	0	0	NA	exonic	Lingo2	frameshift insertion	"Lingo2:NM_001166001:exon2:c.479dupT:p.D162Gfs*2,Lingo2:NM_175516:exon3:c.479dupT:p.D162Gfs*2,Lingo2:NM_001165999:exon8:c.479dupT:p.D162Gfs*2,Lingo2:NM_001166000:exon9:c.479dupT:p.D162Gfs*2"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.182333561	NA	NA	CCA	frameshift	C	5	CCCCC	1
M7	chr4	39451164	12A2p6	cell line	sgMsh2	39451164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	113	0	0	NA	exonic	1700009N14Rik	synonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A369G:p.K123K	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996705	AAG	synonymous	NA	NA	NA	NA
M7	chr4	40163770	12A2p6	cell line	sgMsh2	40163770	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	92	72	26	0.361111111	exonic	Aco1	nonsynonymous SNV	Aco1:NM_007386:exon2:c.C22T:p.L8F	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9989161	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	40177796	12A2p6	cell line	sgMsh2	40177796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	82	80	22	0.275	exonic	Aco1	synonymous SNV	Aco1:NM_007386:exon8:c.A816G:p.G272G	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9980902	GAG	synonymous	NA	NA	NA	NA
M7	chr4	40229651	12A2p6	cell line	sgMsh2	40229651	G	A	SNV	Mutect2;Vardict	2	0.062	68	12	0	0	exonic	Ddx58	synonymous SNV	Ddx58:NM_172689:exon3:c.C267T:p.I89I	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.282617019	3	0.989179	CGA	synonymous	NA	NA	NA	NA
M7	chr4	41023681	12A2p6	cell line	sgMsh2	41023681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	81	23	6	0.260869565	exonic	Nfx1	nonsynonymous SNV	Nfx1:NM_023739:exon22:c.A3089C:p.D1030A	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.998276246	1	0.9978939	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	41116066	12A2p6	cell line	sgMsh2	41116066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	60	46	10	0.217391304	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon24:c.C3025T:p.P1009S	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9933783	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	41121239	12A2p6	cell line	sgMsh2	41121239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	63	31	9	0.290322581	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon7:c.T1016C:p.V339A	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9944088	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	41499423	12A2p6	cell line	sgMsh2	41499423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	62	8	0	0	exonic	Myorg	nonsynonymous SNV	Myorg:NM_001085515:exon2:c.C206T:p.A69V	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9940844	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	43646587	12A2p6	cell line	sgMsh2	43646587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	88	21	9	0.428571429	exonic	Npr2	nonsynonymous SNV	"Npr2:NM_001355466:exon12:c.T1859C:p.L620P,Npr2:NM_173788:exon13:c.T1934C:p.L645P"	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9986404	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	43654396	12A2p6	cell line	sgMsh2	43654396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	128	69	14	0.202898551	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon5:c.A416G:p.K139R	4qA5	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998593	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	44994084	12A2p6	cell line	sgMsh2	44994084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	81	6	1	0.166666667	exonic	Zbtb5	synonymous SNV	"Zbtb5:NM_001163283:exon2:c.T1299C:p.C433C,Zbtb5:NM_001163284:exon2:c.T1299C:p.C433C,Zbtb5:NM_173399:exon2:c.T1299C:p.C433C"	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9979789	TAC	synonymous	NA	NA	NA	NA
M7	chr4	45043792	12A2p6	cell line	sgMsh2	45043792	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	15	4	0.266666667	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378819:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378820:exon8:c.G1469A:p.G490D,Fbxo10:NM_001378821:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378822:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378823:exon8:c.G1469A:p.G490D"	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr4	45399331	12A2p6	cell line	sgMsh2	45399331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	234	150	0	0	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.C807A:p.L269L	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.811384346	1	0.8618362	AGA	synonymous	NA	NA	NA	NA
M7	chr4	45399489	12A2p6	cell line	sgMsh2	45399489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	154	99	0	0	exonic	Slc25a51	nonsynonymous SNV	Slc25a51:NM_001009949:exon3:c.A649G:p.I217V	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	0.870642753	1	0.9884869	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr4	45444765	12A2p6	cell line	sgMsh2	45444765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	59	112	26	0.232142857	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon5:c.T1242C:p.A414A	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9929945	CAG	synonymous	NA	NA	NA	NA
M7	chr4	45458236	12A2p6	cell line	sgMsh2	45458236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	67	67	15	0.223880597	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon3:c.T927C:p.T309T	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9955388	CAG	synonymous	NA	NA	NA	NA
M7	chr4	46020900	12A2p6	cell line	sgMsh2	46020900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	82	48	10	0.208333333	exonic	Tdrd7	synonymous SNV	"Tdrd7:NM_001290475:exon13:c.A2325G:p.P775P,Tdrd7:NM_001355189:exon13:c.A2226G:p.P742P,Tdrd7:NM_146142:exon13:c.A2226G:p.P742P"	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9980902	CAC	synonymous	NA	NA	NA	NA
M7	chr4	46629947	12A2p6	cell line	sgMsh2	46629947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	53	25	10	0.4	exonic	Tbc1d2	nonsynonymous SNV	Tbc1d2:NM_198664:exon4:c.T719C:p.V240A	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9901818	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	46684312	12A2p6	cell line	sgMsh2	46684312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	25	0	0	NA	exonic	Gabbr2	nonsynonymous SNV	Gabbr2:NM_001081141:exon14:c.T1961C:p.I654T	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.953699	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	47279934	12A2p6	cell line	sgMsh2	47279934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	54	1	0	0	exonic	Col15a1	nonsynonymous SNV	Col15a1:NM_009928:exon16:c.A2158G:p.T720A	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9907182	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	49792572	12A2p6	cell line	sgMsh2	49792572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	149	0	0	NA	exonic	Grin3a	nonsynonymous SNV	"Grin3a:NM_001033351:exon2:c.A1160G:p.Y387C,Grin3a:NM_001276355:exon2:c.A1160G:p.Y387C"	4qB1	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999572	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	52449331	12A2p6	cell line	sgMsh2	52449331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	19	83	34	0.409638554	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon6:c.T491C:p.M164T,Smc2:NM_008017:exon6:c.T491C:p.M164T"	4qB2	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9361228	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr4	52467902	12A2p6	cell line	sgMsh2	52467902	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	129	92	0	0	exonic	Smc2	frameshift deletion	"Smc2:NM_001301412:exon17:c.2245delA:p.T751Pfs*8,Smc2:NM_008017:exon17:c.2245delA:p.T751Pfs*8"	4qB2	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr4	52995837	12A2p6	cell line	sgMsh2	52995837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	64	0	0	NA	exonic	Nipsnap3a	nonsynonymous SNV	Nipsnap3a:NM_028529:exon3:c.C284T:p.A95V	4qB2	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9947155	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	103	25	1	0.04	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr4	57076378	12A2p6	cell line	sgMsh2	57076378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	77	4	2	0.5	exonic	Epb41l4b	nonsynonymous SNV	"Epb41l4b:NM_001355492:exon11:c.A1082G:p.H361R,Epb41l4b:NM_019427:exon11:c.A1082G:p.H361R"	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9974654	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	57103523	12A2p6	cell line	sgMsh2	57103523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	58	7	2	0.285714286	exonic	Epb41l4b	synonymous SNV	"Epb41l4b:NM_001355492:exon2:c.T312C:p.H104H,Epb41l4b:NM_019427:exon2:c.T312C:p.H104H"	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9925886	CAT	synonymous	NA	NA	NA	NA
M7	chr4	58053269	12A2p6	cell line	sgMsh2	58053269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	111	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon43:c.A10075G:p.I3359V	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996309	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	58088241	12A2p6	cell line	sgMsh2	58088241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	82	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon31:c.A5207G:p.N1736S	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9980902	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	58100861	12A2p6	cell line	sgMsh2	58100861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	34	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon23:c.A3800T:p.E1267V	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9716884	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	59737654	12A2p6	cell line	sgMsh2	59737654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	144	10	2	0.2	exonic	E130308A19Rik	nonsynonymous SNV	E130308A19Rik:NM_001015681:exon3:c.A1264G:p.K422E	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999432	CAA	nonsynonymous	CAC	8	CACCACCA	NA
M7	chr4	59959255	12A2p6	cell line	sgMsh2	59959255	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	217	0	0	NA	exonic	Mup4	nonsynonymous SNV	Mup4:NM_008648:exon3:c.G239T:p.C80F	4qB3	chr4-22376272-60156942	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999991	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr4	63319081	12A2p6	cell line	sgMsh2	63319081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	49	3	0	0	exonic	Col27a1	nonsynonymous SNV	Col27a1:NM_025685:exon47:c.T4247C:p.V1416A	4qB3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.911667805	1	0.9571735	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	63356984	12A2p6	cell line	sgMsh2	63356984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	164	0	0	NA	exonic	Orm3	nonsynonymous SNV	Orm3:NM_001379520:exon3:c.G331A:p.E111K	4qB3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999817	TGA	nonsynonymous	NA	NA	NA	NA
M7	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	88	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9986404	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	68762239	12A2p6	cell line	sgMsh2	68762239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	70	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T2053G:p.F685V	4qC1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9962344	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	68762562	12A2p6	cell line	sgMsh2	68762562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	117	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T1730C:p.M577T	4qC1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9997373	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	70433397	12A2p6	cell line	sgMsh2	70433397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	74	7	0	0	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1486C:p.S496P	4qC2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.9969966	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr4	70433405	12A2p6	cell line	sgMsh2	70433405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	72	6	2	0.333333333	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1478C:p.V493A	4qC2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.847851058	1	0.920719	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	72124894	12A2p6	cell line	sgMsh2	72124894	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	147	7	2	0.285714286	exonic	Tle1	nonsynonymous SNV	"Tle1:NM_001285530:exon14:c.G1485T:p.E495D,Tle1:NM_001285529:exon16:c.G1704T:p.E568D,Tle1:NM_011599:exon16:c.G1707T:p.E569D"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999521	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	72124965	12A2p6	cell line	sgMsh2	72124965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	170	7	1	0.142857143	exonic	Tle1	nonsynonymous SNV	"Tle1:NM_001285530:exon14:c.A1414G:p.I472V,Tle1:NM_001285529:exon16:c.A1633G:p.I545V,Tle1:NM_011599:exon16:c.A1636G:p.I546V"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999987	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr4	73744060	12A2p6	cell line	sgMsh2	73744060	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	69	0	0	NA	exonic	Rasef	nonsynonymous SNV	Rasef:NM_001017427:exon10:c.A868G:p.R290G	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.332758749	3	0.8357766	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	73919858	12A2p6	cell line	sgMsh2	73919858	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	160	0	0	NA	exonic	Gm11756	synonymous SNV	Gm11756:NM_001126326:exon2:c.C90A:p.S30S	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999771	AGG	synonymous	NA	NA	NA	NA
M7	chr4	74307008	12A2p6	cell line	sgMsh2	74307008	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	46	17	3	0.176470588	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon5:c.G448A:p.A150T,Kdm4c:NM_001172095:exon6:c.G724A:p.A242T,Kdm4c:NM_144787:exon6:c.G673A:p.A225T"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9854647	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	75957140	12A2p6	cell line	sgMsh2	75957140	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	114	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon23:c.3664delA:p.I1222fs*0,Ptprd:NM_001352629:exon24:c.3676delA:p.I1226fs*0,Ptprd:NM_001352630:exon24:c.3673delA:p.I1225fs*0,Ptprd:NM_001368993:exon24:c.3703delA:p.I1235fs*0,Ptprd:NM_001352628:exon25:c.3715delA:p.I1239fs*0,Ptprd:NM_001368991:exon34:c.3688delA:p.I1230fs*0,Ptprd:NM_011211:exon34:c.3691delA:p.I1231fs*0"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	ATT	nonsynonymous	NA	NA	NA	-1
M7	chr4	76136913	12A2p6	cell line	sgMsh2	76136913	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	69	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001352628:exon7:c.C580T:p.Q194X,Ptprd:NM_001352629:exon7:c.C580T:p.Q194X,Ptprd:NM_001352630:exon7:c.C580T:p.Q194X,Ptprd:NM_001368992:exon7:c.C580T:p.Q194X,Ptprd:NM_001368993:exon7:c.C580T:p.Q194X,Ptprd:NM_001368991:exon17:c.C598T:p.Q200X,Ptprd:NM_011211:exon17:c.C598T:p.Q200X"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.884317771	1	0.9593397	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	83681465	12A2p6	cell line	sgMsh2	83681465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	88	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon16:c.T743C:p.M248T,Ccdc171:NM_001355378:exon17:c.T2540C:p.M847T"	4qC3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9986404	ATG	nonsynonymous	AGGCAT	12	AGGCATAGGCAT	NA
M7	chr4	84275845	12A2p6	cell line	sgMsh2	84275845	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	123	0	0	NA	exonic	Bnc2	nonsynonymous SNV	"Bnc2:NM_001369082:exon6:c.A3062C:p.N1021T,Bnc2:NM_172870:exon6:c.A3041C:p.N1014T,Bnc2:NM_001369081:exon7:c.A3263C:p.N1088T,Bnc2:NM_001369083:exon7:c.A3242C:p.N1081T,Bnc2:NM_001369084:exon7:c.A3008C:p.N1003T"	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998131	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	84275931	12A2p6	cell line	sgMsh2	84275931	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	83	0	0	NA	exonic	Bnc2	synonymous SNV	"Bnc2:NM_001369082:exon6:c.C2976T:p.V992V,Bnc2:NM_172870:exon6:c.C2955T:p.V985V,Bnc2:NM_001369081:exon7:c.C3177T:p.V1059V,Bnc2:NM_001369083:exon7:c.C3156T:p.V1052V,Bnc2:NM_001369084:exon7:c.C2922T:p.V974V"	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.287175358	3	0.9953616	GGA	synonymous	NA	NA	NA	NA
M7	chr4	85067548	12A2p6	cell line	sgMsh2	85067548	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	92	11	4	0.363636364	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon17:c.C2835T:p.S945S	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9989161	GCT	synonymous	NA	NA	NA	NA
M7	chr4	86277137	12A2p6	cell line	sgMsh2	86277137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	79	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_029967:exon13:c.A1790G:p.E597G,Adamtsl1:NM_001368621:exon14:c.A1841G:p.E614G"	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.583467395	2	0.9744654	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	86575940	12A2p6	cell line	sgMsh2	86575940	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.342	45	106	17	0.160377358	exonic	Rraga	frameshift deletion	Rraga:NM_178376:exon1:c.22delA:p.K9Rfs*3	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr4	88414292	12A2p6	cell line	sgMsh2	88414292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	52	1	0	0	exonic	Hacd4	nonsynonymous SNV	"Hacd4:NM_001377100:exon6:c.T524G:p.V175G,Hacd4:NM_001377098:exon7:c.T671G:p.V224G,Hacd4:NM_001377099:exon7:c.T671G:p.V224G,Hacd4:NM_025760:exon7:c.T671G:p.V224G"	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9896146	AAC	nonsynonymous	A	5	AAAAA	NA
M7	chr4	88522726	12A2p6	cell line	sgMsh2	88522726	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.073	57	0	0	NA	exonic	Ifnb1	nonsynonymous SNV	Ifnb1:NM_010510:exon1:c.A49G:p.T17A	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.332758749	3	0.7684532	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	88880163	12A2p6	cell line	sgMsh2	88880163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	141	0	0	NA	exonic	Ifne	nonsynonymous SNV	Ifne:NM_177348:exon1:c.T17C:p.L6P	4qC4	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999327	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	90224531	12A2p6	cell line	sgMsh2	90224531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	140	0	0	NA	exonic	Zfp352	nonsynonymous SNV	Zfp352:NM_153102:exon2:c.T907A:p.C303S	4qC5	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999287	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr4	96307431	12A2p6	cell line	sgMsh2	96307431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	142	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.A1027G:p.I343V	4qC5	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999364	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	96584125	12A2p6	cell line	sgMsh2	96584125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	150	0	0	NA	exonic	Cyp2j9	synonymous SNV	Cyp2j9:NM_028979:exon3:c.A375G:p.G125G	4qC5	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999596	ATC	synonymous	NA	NA	NA	NA
M7	chr4	98357954	12A2p6	cell line	sgMsh2	98357954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	162	96	21	0.21875	exonic	Tm2d1	nonsynonymous SNV	Tm2d1:NM_053157:exon6:c.A610G:p.T204A	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999795	GTT	nonsynonymous	T	5	TTTTT	NA
M7	chr4	98931511	12A2p6	cell line	sgMsh2	98931511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	128	111	46	0.414414414	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon5:c.A1047G:p.T349T,Usp1:NM_001301414:exon6:c.A1209G:p.T403T,Usp1:NM_146144:exon6:c.A1209G:p.T403T"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998593	CAC	synonymous	NA	NA	NA	NA
M7	chr4	98973478	12A2p6	cell line	sgMsh2	98973478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	77	42	15	0.357142857	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_001369285:exon31:c.T3911C:p.V1304A,Dock7:NM_026082:exon31:c.T3911C:p.V1304A,Dock7:NM_001290636:exon32:c.T4001C:p.V1334A,Dock7:NM_001369286:exon32:c.T4001C:p.V1334A"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9974654	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	99221382	12A2p6	cell line	sgMsh2	99221382	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	117	19	4	0.210526316	exonic	Atg4c	synonymous SNV	"Atg4c:NM_001145967:exon5:c.T585G:p.A195A,Atg4c:NM_175029:exon5:c.T585G:p.A195A"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9997373	CTT	synonymous	NA	NA	NA	NA
M7	chr4	100441210	12A2p6	cell line	sgMsh2	100441210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	103	2	1	0.5	exonic	Ror1	synonymous SNV	Ror1:NM_013845:exon9:c.A1779G:p.L593L	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999419	TAC	synonymous	NA	NA	NA	NA
M7	chr4	100990924	12A2p6	cell line	sgMsh2	100990924	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	101	21	2	0.095238095	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon23:c.G3235A:p.G1079R	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.246150307	3	0.9999652	CGG	nonsynonymous	G	5	GGGGG	NA
M7	chr4	101002990	12A2p6	cell line	sgMsh2	101002990	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	67	20	8	0.4	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon27:c.G3757T:p.A1253S	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9955388	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	101137712	12A2p6	cell line	sgMsh2	101137712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	104	0	0	NA	exonic	Raver2	nonsynonymous SNV	Raver2:NM_183024:exon10:c.T1631C:p.V544A	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999451	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	101599194	12A2p6	cell line	sgMsh2	101599194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	139	1	0	0	exonic	Dnajc6	nonsynonymous SNV	"Dnajc6:NM_001164583:exon4:c.T488C:p.V163A,Dnajc6:NM_001164584:exon4:c.T398C:p.V133A,Dnajc6:NM_001355179:exon4:c.T407C:p.V136A,Dnajc6:NM_001164585:exon5:c.T284C:p.V95A,Dnajc6:NM_001355180:exon5:c.T284C:p.V95A,Dnajc6:NM_198412:exon5:c.T284C:p.V95A"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999246	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	101618548	12A2p6	cell line	sgMsh2	101618548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	54	0	0	NA	exonic	Dnajc6	synonymous SNV	"Dnajc6:NM_001164583:exon12:c.G1617A:p.K539K,Dnajc6:NM_001164584:exon12:c.G1527A:p.K509K,Dnajc6:NM_001355179:exon12:c.G1536A:p.K512K,Dnajc6:NM_001164585:exon13:c.G1413A:p.K471K,Dnajc6:NM_001355180:exon13:c.G1413A:p.K471K,Dnajc6:NM_198412:exon13:c.G1413A:p.K471K"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9907182	AGC	synonymous	AGC	8	AGCAGCAG	NA
M7	chr4	102605137	12A2p6	cell line	sgMsh2	102605137	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	70	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.A1493T:p.D498V,Pde4b:NM_001177981:exon10:c.A1310T:p.D437V,Pde4b:NM_001177982:exon10:c.A1253T:p.D418V,Pde4b:NM_001374780:exon15:c.A1778T:p.D593V,Pde4b:NM_019840:exon15:c.A1964T:p.D655V"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9962344	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	102605239	12A2p6	cell line	sgMsh2	102605239	G	T	SNV	Mutect2;Vardict	2	0.051	84	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.G1595T:p.S532I,Pde4b:NM_001177981:exon10:c.G1412T:p.S471I,Pde4b:NM_001177982:exon10:c.G1355T:p.S452I,Pde4b:NM_001374780:exon15:c.G1880T:p.S627I,Pde4b:NM_019840:exon15:c.G2066T:p.S689I"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.23247529	3	0.9999159	AGC	nonsynonymous	CAG	8	CAGCAGCA	NA
M7	chr4	103139430	12A2p6	cell line	sgMsh2	103139435	GAGGAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	72	31	4	0.129032258	exonic	Mier1	nonframeshift deletion	"Mier1:NM_001039081:exon4:c.253_258del:p.E92_E93del,Mier1:NM_001286223:exon4:c.250_255del:p.E91_E92del,Mier1:NM_001286221:exon6:c.388_393del:p.E137_E138del,Mier1:NM_001286222:exon6:c.304_309del:p.E109_E110del,Mier1:NM_027696:exon6:c.304_309del:p.E109_E110del"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	AGA	inframe	GAG	32	GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGA	-6
M7	chr4	104800418	12A2p6	cell line	sgMsh2	104800418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	57	0	0	NA	exonic	C8b	synonymous SNV	"C8b:NM_001316671:exon9:c.A1281G:p.E427E,C8b:NM_133882:exon10:c.A1479G:p.E493E"	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9921594	AAG	synonymous	NA	NA	NA	NA
M7	chr4	105219449	12A2p6	cell line	sgMsh2	105219449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	103	35	7	0.2	exonic	Plpp3	nonsynonymous SNV	Plpp3:NM_080555:exon5:c.A758G:p.H253R	4qC6	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.961809534	1	0.9981431	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	106346576	12A2p6	cell line	sgMsh2	106346576	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	109	64	1	0.015625	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon4:c.T591G:p.I197M	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.23247529	3	0.999996	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	106359040	12A2p6	cell line	sgMsh2	106359040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	55	30	5	0.166666667	exonic	Usp24	synonymous SNV	Usp24:NM_183225:exon10:c.T1084C:p.L362L	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9912256	CTT	synonymous	NA	NA	NA	NA
M7	chr4	106370984	12A2p6	cell line	sgMsh2	106370984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	104	36	11	0.305555556	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon20:c.A2242G:p.M748V	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999451	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	106636819	12A2p6	cell line	sgMsh2	106636819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	37	0	0	NA	exonic	Ttc22	synonymous SNV	Ttc22:NM_177667:exon5:c.T975C:p.L325L	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9760128	TTA	synonymous	NA	NA	NA	NA
M7	chr4	108642133	12A2p6	cell line	sgMsh2	108642133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	80	21	8	0.380952381	exonic	Zfyve9	synonymous SNV	"Zfyve9:NM_183300:exon17:c.T1914C:p.D638D,Zfyve9:NM_001347163:exon18:c.T3987C:p.D1329D,Zfyve9:NM_001384118:exon18:c.T3987C:p.D1329D"	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9978612	CAT	synonymous	NA	NA	NA	NA
M7	chr4	109083130	12A2p6	cell line	sgMsh2	109083130	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	106	155	62	0.4	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon8:c.T567A:p.D189E,Osbpl9:NM_001355191:exon9:c.T363A:p.D121E,Osbpl9:NM_173350:exon9:c.T606A:p.D202E,Osbpl9:NM_001355190:exon10:c.T363A:p.D121E,Osbpl9:NM_133885:exon11:c.T858A:p.D286E,Osbpl9:NM_001346502:exon12:c.T927A:p.D309E,Osbpl9:NM_001368727:exon12:c.T897A:p.D299E"	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9995099	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	109925893	12A2p6	cell line	sgMsh2	109925893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	146	102	28	0.274509804	exonic	Faf1	synonymous SNV	Faf1:NM_007983:exon17:c.T1581C:p.A527A	4qC7	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999493	CTC	synonymous	NA	NA	NA	NA
M7	chr4	112125158	12A2p6	cell line	sgMsh2	112125158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	104	0	0	NA	exonic	Skint4	nonsynonymous SNV	"Skint4:NM_001357339:exon6:c.T847A:p.S283T,Skint4:NM_178786:exon6:c.T847A:p.S283T,Skint4:NM_001347180:exon7:c.T823A:p.S275T"	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999451	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	112715782	12A2p6	cell line	sgMsh2	112715782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	44	0	0	NA	exonic	Skint10	synonymous SNV	Skint10:NM_177668:exon6:c.T816C:p.L272L	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.756684278	1	0.7185492	AAA	synonymous	NA	NA	NA	NA
M7	chr4	113238336	12A2p6	cell line	sgMsh2	113238336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	173	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon3:c.G125A:p.G42D	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.999989	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr4	115016252	12A2p6	cell line	sgMsh2	115016252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	84	21	7	0.333333333	exonic	Stil	synonymous SNV	"Stil:NM_001304551:exon9:c.T393G:p.V131V,Stil:NM_001304555:exon10:c.T1071G:p.V357V,Stil:NM_001304559:exon10:c.T1071G:p.V357V,Stil:NM_009185:exon10:c.T1071G:p.V357V"	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9982947	TTC	synonymous	NA	NA	NA	NA
M7	chr4	115326675	12A2p6	cell line	sgMsh2	115326675	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	221	0	0	NA	exonic	Cyp4a12a	frameshift deletion	Cyp4a12a:NM_177406:exon6:c.677delT:p.S228Pfs*36	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr4	115432495	12A2p6	cell line	sgMsh2	115432495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	135	0	0	NA	exonic	Cyp4a12b	synonymous SNV	Cyp4a12b:NM_172306:exon5:c.C558T:p.H186H	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999054	ACA	synonymous	NA	NA	NA	NA
M7	chr4	115628670	12A2p6	cell line	sgMsh2	115628670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	18	3	1	0.333333333	exonic	Cyp4b1	nonsynonymous SNV	Cyp4b1:NM_007823:exon8:c.T1069C:p.W357R	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9326447	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	116075581	12A2p6	cell line	sgMsh2	116075581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	12	24	7	0.291666667	exonic	Lrrc41	nonsynonymous SNV	Lrrc41:NM_153521:exon1:c.T173C:p.M58T	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.09214199	ATG	nonsynonymous	G	5	GGGGG	NA
M7	chr4	116152926	12A2p6	cell line	sgMsh2	116152926	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	101	58	0	0	exonic	Pomgnt1	nonsynonymous SNV	"Pomgnt1:NM_001290658:exon5:c.C418A:p.L140M,Pomgnt1:NM_026651:exon6:c.C484A:p.L162M,Pomgnt1:NM_029786:exon6:c.C484A:p.L162M"	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.200566917	3	0.9999993	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	116163736	12A2p6	cell line	sgMsh2	116163736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	220	34	13	0.382352941	exonic	Tspan1	synonymous SNV	Tspan1:NM_133681:exon6:c.A483G:p.S161S	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999992	GTG	synonymous	NA	NA	NA	NA
M7	chr4	116510725	12A2p6	cell line	sgMsh2	116510725	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	90	36	9	0.25	exonic	Ipp	nonsynonymous SNV	Ipp:NM_008389:exon2:c.C154T:p.R52W	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9987861	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr4	116704648	12A2p6	cell line	sgMsh2	116704648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	62	34	9	0.264705882	exonic	Mmachc	synonymous SNV	Mmachc:NM_025962:exon3:c.A288G:p.E96E	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.966367873	1	0.9890955	CTT	synonymous	NA	NA	NA	NA
M7	chr4	116817215	12A2p6	cell line	sgMsh2	116817215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	48	2	2	1	exonic	Mutyh	synonymous SNV	"Mutyh:NM_001316747:exon9:c.T699C:p.R233R,Mutyh:NM_133250:exon11:c.T882C:p.R294R,Mutyh:NM_001159581:exon12:c.T882C:p.R294R"	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9870035	GTC	synonymous	NA	NA	NA	NA
M7	chr4	117111583	12A2p6	cell line	sgMsh2	117111583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	63	0	0	NA	exonic	Ptch2	synonymous SNV	"Ptch2:NM_001312903:exon19:c.T2079C:p.S693S,Ptch2:NM_008958:exon19:c.T3045C:p.S1015S"	4qD1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9944088	GTG	synonymous	NA	NA	NA	NA
M7	chr4	117760430	12A2p6	cell line	sgMsh2	117760430	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	132	0	0	NA	exonic	Klf17	nonsynonymous SNV	Klf17:NM_029416:exon2:c.A729T:p.R243S	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998878	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	118168566	12A2p6	cell line	sgMsh2	118168566	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	32	108	30	0.277777778	exonic	Kdm4a	nonsynonymous SNV	"Kdm4a:NM_001161823:exon5:c.T442A:p.W148R,Kdm4a:NM_172382:exon5:c.T442A:p.W148R"	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9683943	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	118226522	12A2p6	cell line	sgMsh2	118226522	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	55	90	22	0.244444444	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon14:c.T2363C:p.V788A	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9912256	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	118366133	12A2p6	cell line	sgMsh2	118366133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	75	8	0	0	exonic	Szt2	synonymous SNV	Szt2:NM_198170:exon66:c.A9252C:p.G3084G	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9971617	GTC	synonymous	NA	NA	NA	NA
M7	chr4	118782457	12A2p6	cell line	sgMsh2	118782457	G	T	SNV	Mutect2;Vardict	2	0.025	438	0	0	NA	exonic	Olfr1337	nonsynonymous SNV	Olfr1337:NM_146309:exon1:c.C127A:p.L43M	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.113958476	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr4	118829749	12A2p6	cell line	sgMsh2	118829749	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.311	265	0	0	NA	exonic	Olfr1333	synonymous SNV	Olfr1333:NM_207157:exon1:c.G690A:p.K230K	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999999	ACT	synonymous	NA	NA	NA	NA
M7	chr4	118829751	12A2p6	cell line	sgMsh2	118829751	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.311	265	0	0	NA	exonic	Olfr1333	stopgain	Olfr1333:NM_207157:exon1:c.A688T:p.K230X	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	119178558	12A2p6	cell line	sgMsh2	119178558	T	C	SNV	Mutect2;Vardict	2	0.049	89	0	0	NA	exonic	Ermap	nonsynonymous SNV	"Ermap:NM_001369066:exon13:c.A1148G:p.Y383C,Ermap:NM_013848:exon13:c.A1154G:p.Y385C"	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.223358612	3	0.9999771	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	120097174	12A2p6	cell line	sgMsh2	120097174	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	20	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.G2686T:p.A896S	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9394328	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	120162006	12A2p6	cell line	sgMsh2	120162006	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	64	0	0	NA	exonic	Edn2	nonsynonymous SNV	Edn2:NM_007902:exon2:c.T191G:p.I64S	4qD2.1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9947155	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	120535475	12A2p6	cell line	sgMsh2	120535475	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	71	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon3:c.G966T:p.K322N	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9964413	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr4	120715865	12A2p6	cell line	sgMsh2	120715865	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	57	1	0	0	exonic	Kcnq4	synonymous SNV	Kcnq4:NM_001081142:exon5:c.G738T:p.G246G	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9921594	ACC	synonymous	NA	NA	NA	NA
M7	chr4	121082857	12A2p6	cell line	sgMsh2	121082857	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	67	86	1	0.011627907	exonic	Zmpste24	frameshift deletion	Zmpste24:NM_172700:exon5:c.591delT:p.F197Lfs*8	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr4	121147902	12A2p6	cell line	sgMsh2	121147902	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	88	43	1	0.023255814	exonic	Rlf	stopgain	Rlf:NM_001346660:exon8:c.C4210T:p.Q1404X	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.282617019	3	0.99773	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr4	123117040	12A2p6	cell line	sgMsh2	123117040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	167	1	1	1	exonic	Oxct2b	nonsynonymous SNV	Oxct2b:NM_181859:exon1:c.T752C:p.V251A	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999846	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	123297957	12A2p6	cell line	sgMsh2	123297957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	56	31	7	0.225806452	exonic	Pabpc4	nonsynonymous SNV	"Pabpc4:NM_001356377:exon13:c.A1772G:p.H591R,Pabpc4:NM_148917:exon13:c.A1724G:p.H575R,Pabpc4:NM_130881:exon14:c.A1859G:p.H620R"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9917055	CAC	nonsynonymous	GCT	8	GCTGCTGC	NA
M7	chr4	123376393	12A2p6	cell line	sgMsh2	123376393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	43	118	44	0.372881356	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon78:c.T13883C:p.M4628T,Macf1:NM_001199136:exon83:c.T19964C:p.M6655T"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	123408505	12A2p6	cell line	sgMsh2	123408505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	114	42	13	0.30952381	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A2203G:p.T735A	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996886	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	123409107	12A2p6	cell line	sgMsh2	123409107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	94	65	17	0.261538462	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A1601G:p.Y534C	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9990323	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr4	123432412	12A2p6	cell line	sgMsh2	123432412	T	C	SNV	Mutect2;Vardict	2	0.046	117	36	1	0.027777778	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon52:c.A9216G:p.Q3072Q,Macf1:NM_001199136:exon57:c.A15297G:p.Q5099Q"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.209683595	3	0.9999998	ATT	synonymous	NA	NA	NA	NA
M7	chr4	123474499	12A2p6	cell line	sgMsh2	123474499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	191	14	4	0.285714286	exonic	Macf1	synonymous SNV	Macf1:NM_001199136:exon36:c.A6468G:p.K2156K	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999961	ATT	synonymous	NA	NA	NA	NA
M7	chr4	123474578	12A2p6	cell line	sgMsh2	123474578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	153	10	5	0.5	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A6389G:p.E2130G	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999659	TTC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M7	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	105	131	29	0.221374046	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9994813	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	124838723	12A2p6	cell line	sgMsh2	124838723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	63	14	2	0.142857143	exonic	Mtf1	nonsynonymous SNV	Mtf1:NM_008636:exon9:c.A1573G:p.T525A	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9944088	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	125641560	12A2p6	cell line	sgMsh2	125641560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	95	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon5:c.T749C:p.M250T	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.948134517	1	0.9960862	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr4	125694046	12A2p6	cell line	sgMsh2	125694046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	56	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon13:c.A1958G:p.Y653C	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9917055	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M7	chr4	126709549	12A2p6	cell line	sgMsh2	126709549	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	120	198	4	0.02020202	exonic	Psmb2	nonsynonymous SNV	Psmb2:NM_011970:exon6:c.A569G:p.N190S	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.227916951	3	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	126744854	12A2p6	cell line	sgMsh2	126744854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	22	21	5	0.238095238	exonic	Ncdn	nonsynonymous SNV	"Ncdn:NM_001355412:exon7:c.A2120G:p.Q707R,Ncdn:NM_001355413:exon7:c.A2120G:p.Q707R,Ncdn:NM_011986:exon7:c.A2171G:p.Q724R"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9455761	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	126757006	12A2p6	cell line	sgMsh2	126757006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	58	36	6	0.166666667	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon2:c.T80C:p.L27P,AU040320:NM_001035526:exon2:c.T80C:p.L27P,AU040320:NM_133886:exon2:c.T80C:p.L27P"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.948134517	1	0.9821503	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	127128894	12A2p6	cell line	sgMsh2	127128894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	71	8	1	0.125	exonic	Tmem35b	synonymous SNV	Tmem35b:NM_001099319:exon3:c.T327C:p.S109S	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9964413	GTA	synonymous	NA	NA	NA	NA
M7	chr4	127355639	12A2p6	cell line	sgMsh2	127355639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	92	0	0	NA	exonic	Gjb5	synonymous SNV	Gjb5:NM_010291:exon2:c.A711G:p.K237K	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9989161	CTT	synonymous	NA	NA	NA	NA
M7	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	111	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996309	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	46	1	0	0	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9854647	CAT	synonymous	NA	NA	NA	NA
M7	chr4	129182365	12A2p6	cell line	sgMsh2	129182365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	168	75	21	0.28	exonic	S100pbp	nonsynonymous SNV	"S100pbp:NM_001379589:exon2:c.G166A:p.E56K,S100pbp:NM_001379591:exon2:c.G166A:p.E56K,S100pbp:NM_001379593:exon2:c.G166A:p.E56K,S100pbp:NM_001379597:exon2:c.G166A:p.E56K,S100pbp:NM_001347203:exon3:c.G166A:p.E56K,S100pbp:NM_001361317:exon3:c.G166A:p.E56K,S100pbp:NM_001379588:exon3:c.G166A:p.E56K,S100pbp:NM_001379590:exon3:c.G166A:p.E56K,S100pbp:NM_001379592:exon3:c.G166A:p.E56K,S100pbp:NM_001379594:exon3:c.G166A:p.E56K,S100pbp:NM_001379595:exon3:c.G166A:p.E56K,S100pbp:NM_001379596:exon3:c.G166A:p.E56K,S100pbp:NM_001379598:exon3:c.G166A:p.E56K,S100pbp:NM_001379599:exon3:c.G166A:p.E56K,S100pbp:NM_029036:exon3:c.G166A:p.E56K"	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999854	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr4	129360081	12A2p6	cell line	sgMsh2	129360081	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	164	7	3	0.428571429	exonic	Zbtb8a	nonsynonymous SNV	Zbtb8a:NM_028603:exon3:c.G619A:p.V207M	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999817	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr4	130314024	12A2p6	cell line	sgMsh2	130314024	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	194	1	0	0	exonic	Fabp3	nonsynonymous SNV	Fabp3:NM_010174:exon3:c.C317T:p.T106I	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999967	ACT	nonsynonymous	ACTA	8	ACTAACTA	NA
M7	chr4	130949986	12A2p6	cell line	sgMsh2	130949986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	45	0	0	NA	exonic	Matn1	nonsynonymous SNV	Matn1:NM_010769:exon3:c.T505C:p.S169P	4qD2.2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9846293	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	131819618	12A2p6	cell line	sgMsh2	131819618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	28	42	8	0.19047619	exonic	Ptpru	nonsynonymous SNV	"Ptpru:NM_001083119:exon6:c.T761C:p.V254A,Ptpru:NM_011214:exon6:c.T761C:p.V254A"	4qD2.3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.96066	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	133061867	12A2p6	cell line	sgMsh2	133061867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	39	15	3	0.2	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A418G:p.S140G	4qD2.3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.738450922	1	6.97E-07	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	133753036	12A2p6	cell line	sgMsh2	133753036	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.429	6	21	5	0.238095238	exonic	Arid1a	synonymous SNV	Arid1a:NM_001080819:exon1:c.C576T:p.G192G	4qD2.3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.873239	AGC	synonymous	C	5	CCCCC	NA
M7	chr4	133967000	12A2p6	cell line	sgMsh2	133967000	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	151	14	8	0.571428571	exonic	Hmgn2	nonsynonymous SNV	Hmgn2:NM_016957:exon2:c.C17T:p.A6V	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999618	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	111	28	0	0	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.323642071	3	0.9817792	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr4	134345942	12A2p6	cell line	sgMsh2	134345942	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	44	0	0	NA	exonic	Slc30a2	nonsynonymous SNV	"Slc30a2:NM_001039677:exon3:c.C299A:p.A100D,Slc30a2:NM_001346578:exon3:c.C59A:p.A20D"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9837467	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	134472876	12A2p6	cell line	sgMsh2	134472876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	51	308	115	0.373376623	exonic	Stmn1	nonsynonymous SNV	Stmn1:NM_019641:exon4:c.A259G:p.I87V	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.825059363	1	0.8655191	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	134913128	12A2p6	cell line	sgMsh2	134913128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	115	171	44	0.257309942	exonic	Tmem50a	nonsynonymous SNV	Tmem50a:NM_027935:exon2:c.A56G:p.K19R	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9997058	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	134924269	12A2p6	cell line	sgMsh2	134924269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	28	21	11	0.523809524	exonic	Rsrp1	nonsynonymous SNV	Rsrp1:NM_023665:exon2:c.T343C:p.Y115H	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.96066	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	135416591	12A2p6	cell line	sgMsh2	135416591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	143	48	19	0.395833333	exonic	Rcan3	synonymous SNV	Rcan3:NM_022980:exon5:c.A549G:p.K183K	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999399	ATT	synonymous	NA	NA	NA	NA
M7	chr4	135872245	12A2p6	cell line	sgMsh2	135872245	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	163	91	35	0.384615385	exonic	Pnrc2	synonymous SNV	Pnrc2:NM_026383:exon3:c.A192T:p.G64G	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999807	TTC	synonymous	C	5	CCCCC	NA
M7	chr4	135960856	12A2p6	cell line	sgMsh2	135960856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	50	51	14	0.274509804	exonic	Hmgcl	nonsynonymous SNV	"Hmgcl:NM_001357529:exon8:c.A749G:p.N250S,Hmgcl:NM_008254:exon8:c.A824G:p.N275S,Hmgcl:NM_001357530:exon9:c.A617G:p.N206S"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9883813	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	136940317	12A2p6	cell line	sgMsh2	136940317	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	14	0	0	NA	exonic	Epha8	synonymous SNV	Epha8:NM_007939:exon4:c.C852T:p.P284P	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.9168965	CGG	synonymous	G	5	GGGGG	NA
M7	chr4	136951779	12A2p6	cell line	sgMsh2	136951779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	138	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon2:c.T142C:p.Y48H	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999202	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	136987269	12A2p6	cell line	sgMsh2	136987269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	106	11	4	0.363636364	exonic	Zbtb40	nonsynonymous SNV	Zbtb40:NM_198248:exon16:c.T3208C:p.C1070R	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9995099	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	137423336	12A2p6	cell line	sgMsh2	137423336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	81	0	0	NA	exonic	Cela3b	nonsynonymous SNV	Cela3b:NM_026419:exon6:c.T550C:p.Y184H	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9979789	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	137553774	12A2p6	cell line	sgMsh2	137553774	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	17	21	5	0.238095238	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon74:c.C10056T:p.V3352V	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.928991	TCC	synonymous	NA	NA	NA	NA
M7	chr4	137559090	12A2p6	cell line	sgMsh2	137559090	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	31	7	0.225806452	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon79:c.G10819A:p.V3607M	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr4	137610706	12A2p6	cell line	sgMsh2	137610706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	53	82	28	0.341463415	exonic	Usp48	nonsynonymous SNV	"Usp48:NM_001347227:exon7:c.G791A:p.G264E,Usp48:NM_001355588:exon7:c.G791A:p.G264E,Usp48:NM_130879:exon7:c.G791A:p.G264E"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.893434449	1	0.9499558	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr4	137717965	12A2p6	cell line	sgMsh2	137717965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	43	156	54	0.346153846	exonic	Rap1gap	nonsynonymous SNV	"Rap1gap:NM_001331215:exon11:c.T857C:p.V286A,Rap1gap:NM_001379234:exon11:c.T857C:p.V286A,Rap1gap:NM_001379235:exon12:c.T920C:p.V307A,Rap1gap:NM_001379236:exon12:c.T764C:p.V255A,Rap1gap:NM_029563:exon12:c.T764C:p.V255A,Rap1gap:NM_001081155:exon13:c.T956C:p.V319A,Rap1gap:NM_001256218:exon13:c.T956C:p.V319A,Rap1gap:NM_001379233:exon13:c.T956C:p.V319A"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	138288156	12A2p6	cell line	sgMsh2	138288156	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	53	0	0	NA	exonic	Kif17	nonsynonymous SNV	Kif17:NM_010623:exon8:c.T1615G:p.S539A	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9901818	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	138291492	12A2p6	cell line	sgMsh2	138291492	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.601	20	0	0	NA	exonic	Kif17	frameshift deletion	"Kif17:NM_001190978:exon8:c.1441delC:p.L482Cfs*4,Kif17:NM_010623:exon10:c.2152delC:p.L719Cfs*4"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.354	49	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7	chr4	139360079	12A2p6	cell line	sgMsh2	139360079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	48	29	10	0.344827586	exonic	Emc1	nonsynonymous SNV	"Emc1:NM_001039200:exon7:c.T689C:p.V230A,Emc1:NM_146157:exon7:c.T689C:p.V230A"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9870035	GTG	nonsynonymous	TGTGG	11	TGTGGTGTGGT	NA
M7	chr4	139369895	12A2p6	cell line	sgMsh2	139369895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	97	25	6	0.24	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon18:c.T2088C:p.S696S,Emc1:NM_146157:exon19:c.T2097C:p.S699S"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9991836	GTT	synonymous	NA	NA	NA	NA
M7	chr4	139371773	12A2p6	cell line	sgMsh2	139371773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	27	29	13	0.448275862	exonic	Emc1	nonsynonymous SNV	"Emc1:NM_001039200:exon20:c.A2557G:p.T853A,Emc1:NM_146157:exon21:c.A2566G:p.T856A"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.958459	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	139410659	12A2p6	cell line	sgMsh2	139410659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	56	73	14	0.191780822	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon25:c.T3326C:p.L1109P	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9917055	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	139425796	12A2p6	cell line	sgMsh2	139425796	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	109	64	19	0.296875	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon43:c.G6164A:p.G2055D	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9995866	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	139463368	12A2p6	cell line	sgMsh2	139463368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	50	102	28	0.274509804	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon82:c.A12185G:p.K4062R	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9883813	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	139965403	12A2p6	cell line	sgMsh2	139965403	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	48	0	0	NA	exonic	Klhdc7a	nonsynonymous SNV	Klhdc7a:NM_173427:exon1:c.G2232T:p.K744N	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9870035	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	140028713	12A2p6	cell line	sgMsh2	140028713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	117	0	0	NA	exonic	Igsf21	synonymous SNV	Igsf21:NM_198610:exon7:c.A1086G:p.L362L	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9997373	CTA	synonymous	NA	NA	NA	NA
M7	chr4	140710387	12A2p6	cell line	sgMsh2	140710387	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	95	193	55	0.284974093	exonic	Rcc2	nonsynonymous SNV	Rcc2:NM_173867:exon4:c.T428G:p.L143R	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9990856	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	140737313	12A2p6	cell line	sgMsh2	140737313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	97	0	0	NA	exonic	Padi6	nonsynonymous SNV	Padi6:NM_153106:exon6:c.T604C:p.S202P	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9991836	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	141005030	12A2p6	cell line	sgMsh2	141005030	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	51	31	6	0.193548387	exonic	Atp13a2	nonsynonymous SNV	"Atp13a2:NM_001164366:exon24:c.G2605A:p.A869T,Atp13a2:NM_001379619:exon24:c.G2602A:p.A868T,Atp13a2:NM_001379620:exon24:c.G2602A:p.A868T,Atp13a2:NM_001379621:exon24:c.G2602A:p.A868T,Atp13a2:NM_001379622:exon24:c.G2605A:p.A869T,Atp13a2:NM_029097:exon24:c.G2605A:p.A869T"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9890151	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	141247451	12A2p6	cell line	sgMsh2	141247451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	80	5	3	0.6	exonic	Arhgef19	synonymous SNV	"Arhgef19:NM_001379652:exon4:c.T762C:p.D254D,Arhgef19:NM_172520:exon5:c.T762C:p.D254D,Arhgef19:NM_001379647:exon6:c.T762C:p.D254D"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9978612	ATC	synonymous	NA	NA	NA	NA
M7	chr4	141247457	12A2p6	cell line	sgMsh2	141247457	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	80	4	3	0.75	exonic	Arhgef19	nonsynonymous SNV	"Arhgef19:NM_001379652:exon4:c.C768A:p.N256K,Arhgef19:NM_172520:exon5:c.C768A:p.N256K,Arhgef19:NM_001379647:exon6:c.C768A:p.N256K"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9978612	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr4	141493484	12A2p6	cell line	sgMsh2	141493484	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	64	49	12	0.244897959	exonic	Spen	synonymous SNV	"Spen:NM_001347235:exon5:c.G1161A:p.Q387Q,Spen:NM_019763:exon5:c.G1161A:p.Q387Q"	4qD3	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9947155	GCT	synonymous	NA	NA	NA	NA
M7	chr4	141628313	12A2p6	cell line	sgMsh2	141628313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	70	8	4	0.5	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon16:c.A2575T:p.M859L,Plekhm2:NM_001033150:exon17:c.A2635T:p.M879L"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9962344	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	141629940	12A2p6	cell line	sgMsh2	141629940	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	45	10	4	0.4	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001347237:exon13:c.G2160A:p.A720A,Plekhm2:NM_001033150:exon14:c.G2220A:p.A740A"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9846293	TCG	synonymous	NA	NA	NA	NA
M7	chr4	143135450	12A2p6	cell line	sgMsh2	143135450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	174	72	9	0.125	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.A1269G:p.S423S,Prdm2:NM_001256380:exon8:c.A1269G:p.S423S"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999896	CTG	synonymous	NA	NA	NA	NA
M7	chr4	143180932	12A2p6	cell line	sgMsh2	143180932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	98	14	3	0.214285714	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon3:c.A69G:p.R23R,Prdm2:NM_001256380:exon3:c.A69G:p.R23R"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9992286	CTC	synonymous	NA	NA	NA	NA
M7	chr4	143726070	12A2p6	cell line	sgMsh2	143726070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	89	0	0	NA	exonic	Pramel24	nonsynonymous SNV	Pramel24:NM_001085412:exon2:c.A70G:p.T24A	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.9987153	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	143850703	12A2p6	cell line	sgMsh2	143850703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	113	0	0	NA	exonic	Pramel27	synonymous SNV	Pramel27:NM_177571:exon2:c.A54G:p.T18T	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9996705	CAA	synonymous	NA	NA	NA	NA
M7	chr4	143949937	12A2p6	cell line	sgMsh2	143949937	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	221	0	0	NA	exonic	Pramel16	nonsynonymous SNV	Pramel16:NM_001126315:exon2:c.T596A:p.I199N	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	144159644	12A2p6	cell line	sgMsh2	144159644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	151	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.A383G:p.Q128R	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999618	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	144271678	12A2p6	cell line	sgMsh2	144271678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	213	0	0	NA	exonic	Pramel5	nonsynonymous SNV	Pramel5:NM_001085418:exon4:c.A994G:p.T332A	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999989	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr4	144373063	12A2p6	cell line	sgMsh2	144373063	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	137	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.G1131T:p.K377N	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999155	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr4	144418410	12A2p6	cell line	sgMsh2	144418410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	45	0	0	NA	exonic	1700012P22Rik	synonymous SNV	1700012P22Rik:NM_027056:exon4:c.C585T:p.R195R	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9846293	AGC	synonymous	NA	NA	NA	NA
M7	chr4	145065883	12A2p6	cell line	sgMsh2	145065883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	89	26	5	0.192307692	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon57:c.T11276C:p.V3759A,Vps13d:NM_001276465:exon58:c.T11273C:p.V3758A"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9987153	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	145110843	12A2p6	cell line	sgMsh2	145110843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	42	20	4	0.2	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon35:c.T8189C:p.L2730P,Vps13d:NM_001276465:exon36:c.T8189C:p.L2730P"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9818293	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	145131617	12A2p6	cell line	sgMsh2	145131617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	85	15	2	0.133333333	exonic	Vps13d	synonymous SNV	"Vps13d:NM_001276502:exon26:c.G6636A:p.V2212V,Vps13d:NM_001276465:exon27:c.G6636A:p.V2212V"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9983886	CCA	synonymous	NA	NA	NA	NA
M7	chr4	145156208	12A2p6	cell line	sgMsh2	145156208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	72	17	5	0.294117647	exonic	Vps13d	synonymous SNV	"Vps13d:NM_001276502:exon18:c.T2814C:p.S938S,Vps13d:NM_001276465:exon19:c.T2814C:p.S938S"	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9966369	TAC	synonymous	NA	NA	NA	NA
M7	chr4	145293180	12A2p6	cell line	sgMsh2	145293180	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	60	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon5:c.A422T:p.K141M	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9933783	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr4	147390490	12A2p6	cell line	sgMsh2	147390490	G	T	SNV	Mutect2;MuSe;Vardict	3	0.046	522	0	0	NA	exonic	Zfp978	stopgain	Zfp978:NM_001378742:exon5:c.G493T:p.G165X	4qE1	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.209683595	3	1	AGG	nonsynonymous	TCAA	8	TCAATCAA	NA
M7	chr4	148016905	12A2p6	cell line	sgMsh2	148016905	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	160	18	7	0.388888889	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon13:c.T1195A:p.C399S	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999771	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	148038747	12A2p6	cell line	sgMsh2	148038747	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.429	5	11	3	0.272727273	exonic	Clcn6	synonymous SNV	Clcn6:NM_011929:exon1:c.C21T:p.S7S	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.8654137	CGG	synonymous	C	5	CCCCC	NA
M7	chr4	148038755	12A2p6	cell line	sgMsh2	148038755	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.383	6	5	2	0.4	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon1:c.A13T:p.R5W	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.873239	CTG	nonsynonymous	C	5	CCCCC	NA
M7	chr4	148480940	12A2p6	cell line	sgMsh2	148480940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	55	28	9	0.321428571	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon20:c.A3106G:p.T1036A	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9912256	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	148674577	12A2p6	cell line	sgMsh2	148674577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	48	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon11:c.A1123G:p.T375A	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9870035	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	149237413	12A2p6	cell line	sgMsh2	149237413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	168	17	9	0.529411765	exonic	Kif1b	synonymous SNV	Kif1b:NM_008441:exon21:c.A3048G:p.V1016V	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9999854	GTA	synonymous	NA	NA	NA	NA
M7	chr4	150866443	12A2p6	cell line	sgMsh2	150866443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	124	226	73	0.32300885	exonic	Errfi1	synonymous SNV	"Errfi1:NM_001356323:exon4:c.A327G:p.Q109Q,Errfi1:NM_133753:exon4:c.A327G:p.Q109Q"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9998234	AAG	synonymous	NA	NA	NA	NA
M7	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.421	41	338	82	0.24260355	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416T:p.Y139F	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	2	1	1	0.9807891	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr4	151145372	12A2p6	cell line	sgMsh2	151145372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	43	0	0	NA	exonic	Camta1	synonymous SNV	Camta1:NM_001081557:exon9:c.A1002G:p.A334A	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.820501024	1	0.8537034	GTG	synonymous	NA	NA	NA	NA
M7	chr4	151145398	12A2p6	cell line	sgMsh2	151145398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	42	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A976G:p.R326G	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.911667805	1	0.9474771	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr4	151983212	12A2p6	cell line	sgMsh2	151983212	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.391	54	35	5	0.142857143	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7	chr4	152108328	12A2p6	cell line	sgMsh2	152108328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	81	7	3	0.428571429	exonic	Plekhg5	nonsynonymous SNV	"Plekhg5:NM_001285999:exon14:c.A1750G:p.M584V,Plekhg5:NM_001374783:exon15:c.A1711G:p.M571V"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9979789	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr4	152138902	12A2p6	cell line	sgMsh2	152138902	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	23	1	0	0	exonic	Espn	nonsynonymous SNV	Espn:NM_207687:exon4:c.T692G:p.V231G	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	9.98E-08	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr4	152312198	12A2p6	cell line	sgMsh2	152312198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	55	3	1	0.333333333	exonic	Rnf207	nonsynonymous SNV	Rnf207:NM_001033489:exon13:c.T1355C:p.L452P	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9912256	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	152377002	12A2p6	cell line	sgMsh2	152377002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	43	0	0	NA	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_029216:exon24:c.T3659A:p.I1220N,Chd5:NM_001081376:exon25:c.T3770A:p.I1257N,Chd5:NM_001369243:exon25:c.T3770A:p.I1257N"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9828142	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr4	153385015	12A2p6	cell line	sgMsh2	153385015	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.373	7	0	0	NA	exonic	Ajap1	synonymous SNV	Ajap1:NM_001099299:exon4:c.C957T:p.S319S	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.8801471	GGC	synonymous	NA	NA	NA	NA
M7	chr4	153432325	12A2p6	cell line	sgMsh2	153432325	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	37	0	0	NA	exonic	Ajap1	synonymous SNV	Ajap1:NM_001099299:exon2:c.G558A:p.T186T	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9760128	CCG	synonymous	C	5	CCCCC	NA
M7	chr4	154267441	12A2p6	cell line	sgMsh2	154267441	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	99	10	0	0	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon28:c.C3496T:p.R1166C	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9992711	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr4	154291064	12A2p6	cell line	sgMsh2	154291064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	40	32	10	0.3125	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.T472C:p.Y158H	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9796905	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	59	1	0	0	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9929945	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr4	155753972	12A2p6	cell line	sgMsh2	155753972	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	112	115	0	0	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C587T:p.A196V	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.282617019	3	0.9996544	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr4	155753982	12A2p6	cell line	sgMsh2	155753982	G	C	SNV	Mutect2;Vardict	2	0.065	108	99	0	0	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C577G:p.R193G	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	0.296292037	3	0.9983238	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr4	156177081	12A2p6	cell line	sgMsh2	156177081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	44	49	15	0.306122449	exonic	Agrn	nonsynonymous SNV	"Agrn:NM_001369026:exon8:c.A1358G:p.E453G,Agrn:NM_021604:exon9:c.A1679G:p.E560G"	4qE2	chr4-61832035-156223608	3	2	1	0.9	4.102505121	NA	1	1	1	0.9837467	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	3605660	12A2p6	cell line	sgMsh2	3605660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	182	17	4	0.235294118	exonic	Pex1	synonymous SNV	"Pex1:NM_001293806:exon5:c.A486G:p.P162P,Pex1:NM_027777:exon5:c.A486G:p.P162P"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	CAG	synonymous	NA	NA	NA	NA
M7	chr5	3693883	12A2p6	cell line	sgMsh2	3693883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	93	30	5	0.166666667	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001289528:exon18:c.C1584T:p.G528G,Ankib1:NM_001003909:exon19:c.C2406T:p.G802G,Ankib1:NM_001289527:exon19:c.C2424T:p.G808G,Ankib1:NM_001289529:exon19:c.C951T:p.G317G"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.6666272	GGC	synonymous	NA	NA	NA	NA
M7	chr5	3772546	12A2p6	cell line	sgMsh2	3772546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	254	60	21	0.35	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001003909:exon2:c.T159C:p.A53A,Ankib1:NM_001289527:exon2:c.T159C:p.A53A"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9981682	CAG	synonymous	NA	NA	NA	NA
M7	chr5	3818616	12A2p6	cell line	sgMsh2	3818616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	86	60	12	0.2	exonic	Krit1	nonsynonymous SNV	"Krit1:NM_001170552:exon9:c.A1079G:p.H360R,Krit1:NM_030675:exon9:c.A1079G:p.H360R"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8722475	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	3836853	12A2p6	cell line	sgMsh2	3836853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	95	47	9	0.191489362	exonic	Krit1	nonsynonymous SNV	Krit1:NM_030675:exon16:c.A2101G:p.S701G	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9990856	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	6770788	12A2p6	cell line	sgMsh2	6770788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	189	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.C2274T:p.C758C	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999937	GGC	synonymous	NA	NA	NA	NA
M7	chr5	6771852	12A2p6	cell line	sgMsh2	6771852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	307	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A1210C:p.R404R	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9999997	CTT	synonymous	NA	NA	NA	NA
M7	chr5	7975687	12A2p6	cell line	sgMsh2	7975687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	156	0	0	NA	exonic	Steap4	nonsynonymous SNV	Steap4:NM_054098:exon2:c.A247G:p.R83G	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.999612	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	8397701	12A2p6	cell line	sgMsh2	8397701	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	241	158	2	0.012658228	exonic	Dbf4	nonsynonymous SNV	"Dbf4:NM_001190717:exon12:c.T1505C:p.L502P,Dbf4:NM_013726:exon12:c.T1508C:p.L503P"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	8686194	12A2p6	cell line	sgMsh2	8686194	T	-	Deletion	Strelka2;Vardict	2	0.2011	174	35	1	0.028571429	exonic	Abcb1a	frameshift deletion	Abcb1a:NM_011076:exon9:c.586delT:p.F197Lfs*4	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.916681978	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr5	8955418	12A2p6	cell line	sgMsh2	8955418	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	140	24	4	0.166666667	exonic	Abcb4	synonymous SNV	Abcb4:NM_008830:exon26:c.C3300T:p.L1100L	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	TCA	synonymous	NA	NA	NA	NA
M7	chr5	8989678	12A2p6	cell line	sgMsh2	8989678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	145	253	49	0.193675889	exonic	Crot	nonsynonymous SNV	Crot:NM_023733:exon4:c.A168C:p.Q56H	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7611859	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	9118463	12A2p6	cell line	sgMsh2	9118463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	82	53	17	0.320754717	exonic	Tmem243	nonsynonymous SNV	Tmem243:NM_001081029:exon5:c.T244C:p.Y82H	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	9422342	12A2p6	cell line	sgMsh2	9422342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	97	0	0	NA	exonic	Elapor2	synonymous SNV	"Elapor2:NM_001359885:exon7:c.T699C:p.T233T,Elapor2:NM_001359886:exon7:c.T699C:p.T233T,Elapor2:NM_001359884:exon8:c.T1038C:p.T346T,Elapor2:NM_172706:exon8:c.T1038C:p.T346T"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9991836	CTA	synonymous	NA	NA	NA	NA
M7	chr5	14679484	12A2p6	cell line	sgMsh2	14679484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	158	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.A8355G:p.L2785L,Pclo:NM_011995:exon5:c.A8355G:p.L2785L"	5qA1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	TAG	synonymous	NA	NA	NA	NA
M7	chr5	16246736	12A2p6	cell line	sgMsh2	16246736	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	102	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110844:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110845:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110846:exon7:c.A597G:p.E199E,Cacna2d1:NM_009784:exon7:c.A597G:p.E199E"	5qA2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.09256294	AAG	synonymous	NA	NA	NA	NA
M7	chr5	16246742	12A2p6	cell line	sgMsh2	16246742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	104	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110844:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110845:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110846:exon7:c.T603C:p.P201P,Cacna2d1:NM_009784:exon7:c.T603C:p.P201P"	5qA2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	0.8888091	CTA	synonymous	NA	NA	NA	NA
M7	chr5	16359015	12A2p6	cell line	sgMsh2	16359015	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	75	3	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.G2623A:p.D875N,Cacna2d1:NM_009784:exon32:c.G2638A:p.D880N,Cacna2d1:NM_001110843:exon33:c.G2695A:p.D899N,Cacna2d1:NM_001110844:exon33:c.G2659A:p.D887N,Cacna2d1:NM_001110845:exon33:c.G2644A:p.D882N"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9971617	TGA	nonsynonymous	NA	NA	NA	NA
M7	chr5	16365849	12A2p6	cell line	sgMsh2	16365849	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	144	3	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon37:c.T3099A:p.D1033E,Cacna2d1:NM_009784:exon37:c.T3114A:p.D1038E,Cacna2d1:NM_001110843:exon38:c.T3171A:p.D1057E,Cacna2d1:NM_001110844:exon38:c.T3135A:p.D1045E,Cacna2d1:NM_001110845:exon38:c.T3120A:p.D1040E"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	2.96E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	16578469	12A2p6	cell line	sgMsh2	16578469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	159	0	0	NA	exonic	Hgf	nonsynonymous SNV	"Hgf:NM_001289461:exon7:c.A761G:p.N254S,Hgf:NM_001289458:exon8:c.A776G:p.N259S,Hgf:NM_001289459:exon8:c.A776G:p.N259S,Hgf:NM_010427:exon8:c.A776G:p.N259S"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999758	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	16618861	12A2p6	cell line	sgMsh2	16618861	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.274	120	0	0	NA	exonic	Hgf	frameshift insertion	"Hgf:NM_001289461:exon18:c.2041dupA:p.M682Nfs*58,Hgf:NM_001289458:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_001289459:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_010427:exon19:c.2056dupA:p.M687Nfs*58"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ACA	frameshift	NA	NA	NA	1
M7	chr5	17986457	12A2p6	cell line	sgMsh2	17986457	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	124	0	0	NA	exonic	Gnat3	nonsynonymous SNV	Gnat3:NM_001081143:exon2:c.A139C:p.S47R	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.23247529	3	0.9999993	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	20569240	12A2p6	cell line	sgMsh2	20569240	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	65	0	0	NA	exonic	Magi2	nonsynonymous SNV	"Magi2:NM_001170745:exon14:c.T2197G:p.F733V,Magi2:NM_015823:exon15:c.T2239G:p.F747V,Magi2:NM_001170746:exon16:c.T2728G:p.F910V"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.660959158	2	0.7724582	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	20896261	12A2p6	cell line	sgMsh2	20896261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	148	54	9	0.166666667	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2280C:p.S760S	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	TAC	synonymous	NA	NA	NA	NA
M7	chr5	20896655	12A2p6	cell line	sgMsh2	20896655	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	109	54	13	0.240740741	exonic	Rsbn1l	nonsynonymous SNV	Rsbn1l:NM_001080977:exon8:c.G1886A:p.G629D	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995866	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	21303253	12A2p6	cell line	sgMsh2	21303253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	152	1	0	0	exonic	Ccdc146	nonsynonymous SNV	Ccdc146:NM_029195:exon14:c.A1796G:p.N599S	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999639	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	21796579	12A2p6	cell line	sgMsh2	21796579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	142	351	90	0.256410256	exonic	Psmc2	synonymous SNV	"Psmc2:NM_001368661:exon4:c.T237C:p.D79D,Psmc2:NM_011188:exon5:c.T237C:p.D79D"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	ATT	synonymous	NA	NA	NA	NA
M7	chr5	22134610	12A2p6	cell line	sgMsh2	22134610	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	143	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon7:c.G743A:p.G248D	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	22550222	12A2p6	cell line	sgMsh2	22550222	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	119	32	11	0.34375	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon1:c.A42G:p.Q14Q	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8677359	CTT	synonymous	NA	NA	NA	NA
M7	chr5	23496459	12A2p6	cell line	sgMsh2	23496459	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	71	16	0.225352113	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon18:c.A2507T:p.H836L	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	23548558	12A2p6	cell line	sgMsh2	23548558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	142	45	6	0.133333333	exonic	Srpk2	nonsynonymous SNV	"Srpk2:NM_001359175:exon3:c.T196C:p.Y66H,Srpk2:NM_009274:exon3:c.T196C:p.Y66H,Srpk2:NM_001359172:exon4:c.T229C:p.Y77H,Srpk2:NM_001359173:exon4:c.T229C:p.Y77H,Srpk2:NM_001359174:exon5:c.T196C:p.Y66H"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8933554	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	24386133	12A2p6	cell line	sgMsh2	24386133	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	53	6	0	0	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon10:c.C2298T:p.A766A	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	AGG	synonymous	AAGG	8	AAGGAAGG	NA
M7	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	60	7	0	0	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	CAC	synonymous	NA	NA	NA	NA
M7	chr5	24415437	12A2p6	cell line	sgMsh2	24415437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	77	0	0	NA	exonic	Asic3	frameshift deletion	"Asic3:NM_001310474:exon2:c.585delG:p.A197Qfs*76,Asic3:NM_183000:exon2:c.585delG:p.A197Qfs*76"	5qA3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7	chr5	26257862	12A2p6	cell line	sgMsh2	26257862	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	285	0	0	NA	exonic	Gm7361	nonsynonymous SNV	Gm7361:NM_001281527:exon1:c.G101T:p.R34M	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr5	26261120	12A2p6	cell line	sgMsh2	26261120	T	G	SNV	Mutect2;Vardict	2	0.03	184	0	0	NA	exonic	Gm7361	nonsynonymous SNV	Gm7361:NM_001281527:exon4:c.T479G:p.L160R	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	29435567	12A2p6	cell line	sgMsh2	29435567	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	127	75	22	0.293333333	exonic	Nom1	nonsynonymous SNV	Nom1:NM_001033457:exon1:c.A890T:p.K297I	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.733892583	2	0.7652788	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr5	30145301	12A2p6	cell line	sgMsh2	30145301	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	120	178	36	0.202247191	exonic	Hadha	nonsynonymous SNV	Hadha:NM_178878:exon4:c.A248C:p.D83A	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	30534207	12A2p6	cell line	sgMsh2	30534207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	110	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon3:c.T169C:p.S57P	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9955874	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	30958349	12A2p6	cell line	sgMsh2	30958349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	126	146	29	0.198630137	exonic	Preb	synonymous SNV	"Preb:NM_001294302:exon5:c.A636G:p.T212T,Preb:NM_016703:exon5:c.A636G:p.T212T"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998424	CTG	synonymous	NA	NA	NA	NA
M7	chr5	31058101	12A2p6	cell line	sgMsh2	31058101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	75	57	25	0.438596491	exonic	Cad	synonymous SNV	"Cad:NM_001289522:exon3:c.A255G:p.G85G,Cad:NM_001289523:exon3:c.A255G:p.G85G,Cad:NM_023525:exon3:c.A255G:p.G85G"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.7814678	GAC	synonymous	NA	NA	NA	NA
M7	chr5	31073249	12A2p6	cell line	sgMsh2	31073249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	73	43	7	0.162790698	exonic	Cad	nonsynonymous SNV	"Cad:NM_001289522:exon30:c.A4836G:p.I1612M,Cad:NM_001289523:exon30:c.A4836G:p.I1612M,Cad:NM_023525:exon30:c.A4836G:p.I1612M"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	31159468	12A2p6	cell line	sgMsh2	31159468	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	93	102	27	0.264705882	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon15:c.C2081T:p.A694V	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.59	108	134	39	0.291044776	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M7	chr5	31208020	12A2p6	cell line	sgMsh2	31208020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	117	178	30	0.168539326	exonic	Ppm1g	nonsynonymous SNV	Ppm1g:NM_008014:exon3:c.T269C:p.L90P	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	31246336	12A2p6	cell line	sgMsh2	31246336	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	135	1	0	0	exonic	Nrbp1	nonsynonymous SNV	Nrbp1:NM_001347326:exon8:c.T676A:p.F226I	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9977694	TTT	nonsynonymous	T	5	TTTTT	NA
M7	chr5	31295080	12A2p6	cell line	sgMsh2	31295080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	137	2	0	0	exonic	Fndc4	nonsynonymous SNV	"Fndc4:NM_001356945:exon3:c.A163G:p.R55G,Fndc4:NM_001356946:exon3:c.A163G:p.R55G,Fndc4:NM_001378890:exon3:c.A163G:p.R55G,Fndc4:NM_022424:exon3:c.A163G:p.R55G"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.724775905	2	0.8545523	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	32262374	12A2p6	cell line	sgMsh2	32262374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	150	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon3:c.T74A:p.I25N	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999596	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr5	32655239	12A2p6	cell line	sgMsh2	32655239	A	G	SNV	Mutect2;Vardict	2	0.026	221	101	0	0	exonic	Yes1	synonymous SNV	"Yes1:NM_001205132:exon7:c.A852G:p.G284G,Yes1:NM_001205133:exon7:c.A852G:p.G284G,Yes1:NM_009535:exon7:c.A852G:p.G284G"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.118516815	3	1	GAT	synonymous	NA	NA	NA	NA
M7	chr5	32738043	12A2p6	cell line	sgMsh2	32738043	G	T	SNV	Mutect2;Vardict	2	0.073	58	91	0	0	exonic	Pisd	nonsynonymous SNV	"Pisd:NM_177298:exon7:c.C939A:p.F313L,Pisd:NM_001347332:exon8:c.C846A:p.F282L"	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.332758749	3	0.77475	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr5	32827128	12A2p6	cell line	sgMsh2	32827128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	122	28	3	0.107142857	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.A5022G:p.K1674K	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9758003	CTT	synonymous	NA	NA	NA	NA
M7	chr5	32827513	12A2p6	cell line	sgMsh2	32827513	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	103	18	5	0.277777778	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.T4637C:p.V1546A	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	32844169	12A2p6	cell line	sgMsh2	32844169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	146	16	6	0.375	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon3:c.A346G:p.M116V	5qB1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	34129276	12A2p6	cell line	sgMsh2	34129276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	167	3	1	0.333333333	exonic	Poln	nonsynonymous SNV	"Poln:NM_001289803:exon4:c.A547G:p.T183A,Poln:NM_181857:exon4:c.A547G:p.T183A,Poln:NM_001289804:exon5:c.A547G:p.T183A"	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9953593	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	34459136	12A2p6	cell line	sgMsh2	34459136	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	93	45	7	0.155555556	exonic	Fam193a	nonsynonymous SNV	Fam193a:NM_001243123:exon15:c.A2657T:p.Q886L	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.519650649	2	0.9982118	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr5	34650362	12A2p6	cell line	sgMsh2	34650362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	195	98	13	0.132653061	exonic	Nop14	nonsynonymous SNV	Nop14:NM_029278:exon8:c.A1255G:p.K419E	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999969	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	34834302	12A2p6	cell line	sgMsh2	34834302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	174	23	6	0.260869565	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon28:c.A3610G:p.K1204E	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.998444	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr5	35087007	12A2p6	cell line	sgMsh2	35087007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	55	0	0	NA	exonic	Dok7	nonsynonymous SNV	"Dok7:NM_172708:exon9:c.T1594C:p.S532P,Dok7:NM_001348478:exon10:c.T1705C:p.S569P"	5qB2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	37370761	12A2p6	cell line	sgMsh2	37370761	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	118	0	0	NA	exonic	Evc2	synonymous SNV	Evc2:NM_145920:exon8:c.G1113A:p.E371E	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.7159481	AGA	synonymous	NA	NA	NA	NA
M7	chr5	37393177	12A2p6	cell line	sgMsh2	37393177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	49	0	0	NA	exonic	Evc2	nonsynonymous SNV	Evc2:NM_145920:exon14:c.C2534A:p.P845H	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9877115	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	38106637	12A2p6	cell line	sgMsh2	38106637	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	146	33	0	0	exonic	Stx18	frameshift deletion	"Stx18:NM_001359398:exon3:c.264delA:p.R90Efs*13,Stx18:NM_001289535:exon4:c.426delA:p.R144Efs*13,Stx18:NM_026959:exon4:c.426delA:p.R144Efs*13"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.998276246	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr5	38144744	12A2p6	cell line	sgMsh2	38144744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	158	0	0	NA	exonic	Nsg1	nonsynonymous SNV	"Nsg1:NM_001359090:exon3:c.T322C:p.Y108H,Nsg1:NM_001359091:exon4:c.T322C:p.Y108H,Nsg1:NM_001359092:exon4:c.T322C:p.Y108H,Nsg1:NM_010942:exon4:c.T322C:p.Y108H"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	39614551	12A2p6	cell line	sgMsh2	39614551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	106	175	26	0.148571429	exonic	Hs3st1	nonsynonymous SNV	Hs3st1:NM_010474:exon2:c.T748C:p.F250L	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	41762007	12A2p6	cell line	sgMsh2	41762007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	30	0	0	NA	exonic	Nkx3-2	nonsynonymous SNV	Nkx3-2:NM_007524:exon2:c.T637C:p.F213L	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9642068	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	41817204	12A2p6	cell line	sgMsh2	41817204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	202	56	17	0.303571429	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6766T:p.R2256C,Bod1l:NM_001310601:exon10:c.C6766T:p.R2256C"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.999988	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	41817776	12A2p6	cell line	sgMsh2	41817776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	127	68	18	0.264705882	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6194T:p.T2065I,Bod1l:NM_001310601:exon10:c.C6194T:p.T2065I"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5041161	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	44541790	12A2p6	cell line	sgMsh2	44541790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	138	0	0	NA	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon3:c.A305G:p.Y102C,Ldb2:NM_001286348:exon3:c.A305G:p.Y102C,Ldb2:NM_001347349:exon3:c.A305G:p.Y102C,Ldb2:NM_001359070:exon3:c.A305G:p.Y102C,Ldb2:NM_001359071:exon3:c.A305G:p.Y102C,Ldb2:NM_010698:exon3:c.A305G:p.Y102C"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	45512033	12A2p6	cell line	sgMsh2	45512033	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	98	230	46	0.2	exonic	Lap3	nonsynonymous SNV	Lap3:NM_024434:exon13:c.T1523G:p.I508S	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.733892583	2	0.6329837	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	45553086	12A2p6	cell line	sgMsh2	45553086	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	190	0	0	NA	exonic	Fam184b	synonymous SNV	Fam184b:NM_021416:exon8:c.A1701G:p.Q567Q	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.14130851	3	1	TTT	synonymous	NA	NA	NA	NA
M7	chr5	48259654	12A2p6	cell line	sgMsh2	48259654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	192	52	21	0.403846154	exonic	Slit2	nonsynonymous SNV	"Slit2:NM_178804:exon28:c.A3035G:p.Y1012C,Slit2:NM_001291228:exon29:c.A3047G:p.Y1016C,Slit2:NM_001291227:exon30:c.A3071G:p.Y1024C"	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999963	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	48374537	12A2p6	cell line	sgMsh2	48374537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	126	23	6	0.260869565	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon3:c.C206A:p.P69H	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998424	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	49987499	12A2p6	cell line	sgMsh2	49987499	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	32	82	31	0.37804878	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon12:c.G1751A:p.S584N	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.8834703	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	50025736	12A2p6	cell line	sgMsh2	50025736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	98	65	10	0.153846154	exonic	Adgra3	synonymous SNV	Adgra3:NM_133911:exon2:c.A267G:p.S89S	5qB3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	ATG	synonymous	NA	NA	NA	NA
M7	chr5	52161595	12A2p6	cell line	sgMsh2	52161595	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	107	221	53	0.239819005	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon8:c.G1477A:p.E493K,Dhx15:NM_007839:exon8:c.G1477A:p.E493K"	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9459886	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	52376478	12A2p6	cell line	sgMsh2	52376478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	53	8	5	0.625	exonic	Ccdc149	nonsynonymous SNV	"Ccdc149:NM_001256059:exon12:c.A1345T:p.T449S,Ccdc149:NM_001379231:exon13:c.A1378T:p.T460S"	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	GTC	nonsynonymous	TCAG	9	TCAGTCAGT	NA
M7	chr5	52538466	12A2p6	cell line	sgMsh2	52538466	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	103	0	0	NA	exonic	Lgi2	nonsynonymous SNV	"Lgi2:NM_144945:exon7:c.G1150T:p.V384F,Lgi2:NM_001310604:exon8:c.G1126T:p.V376F"	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.692867532	2	0.8703842	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr5	53200387	12A2p6	cell line	sgMsh2	53200387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	51	19	0.37254902	exonic	Sel1l3	nonsynonymous SNV	Sel1l3:NM_172710:exon2:c.T262G:p.F88V	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	AAG	nonsynonymous	AAAT	11	AAATAAATAAA	NA
M7	chr5	53642073	12A2p6	cell line	sgMsh2	53642073	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	215	28	1	0.035714286	exonic	Rbpj	frameshift deletion	"Rbpj:NM_001080927:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_001080928:exon4:c.199delA:p.E70Sfs*20,Rbpj:NM_001359152:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_009035:exon4:c.322delA:p.E111Sfs*20,Rbpj:NM_001277116:exon6:c.265delA:p.E92Sfs*20"	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M7	chr5	53700084	12A2p6	cell line	sgMsh2	53700084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	84	0	0	NA	exonic	Cckar	nonsynonymous SNV	"Cckar:NM_001347354:exon5:c.T770C:p.V257A,Cckar:NM_009827:exon5:c.T983C:p.V328A"	5qC1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	62730687	12A2p6	cell line	sgMsh2	62730687	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	150	18	4	0.222222222	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon6:c.T1315G:p.F439V	5qC3.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9999564	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	63898504	12A2p6	cell line	sgMsh2	63898504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	53	6	0	0	exonic	0610040J01Rik	synonymous SNV	0610040J01Rik:NM_029554:exon4:c.A582C:p.T194T	5qC3.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9901818	CAG	synonymous	NA	NA	NA	NA
M7	chr5	65164611	12A2p6	cell line	sgMsh2	65164611	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	93	73	20	0.273972603	exonic	Klhl5	nonsynonymous SNV	"Klhl5:NM_001347355:exon10:c.G1559T:p.G520V,Klhl5:NM_175174:exon10:c.G1979T:p.G660V"	5qC3.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	67398283	12A2p6	cell line	sgMsh2	67398283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	77	7	0	0	exonic	Bend4	nonsynonymous SNV	Bend4:NM_001164806:exon5:c.T1579C:p.S527P	5qC3.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9974654	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr5	71571732	12A2p6	cell line	sgMsh2	71571732	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	106	0	0	NA	exonic	Gabra4	synonymous SNV	"Gabra4:NM_001359044:exon6:c.G1254A:p.K418K,Gabra4:NM_001359043:exon8:c.G1389A:p.K463K,Gabra4:NM_001359041:exon9:c.G1704A:p.K568K,Gabra4:NM_010251:exon9:c.G1626A:p.K542K"	5qC3.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995099	CCT	synonymous	NA	NA	NA	NA
M7	chr5	73068782	12A2p6	cell line	sgMsh2	73068782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	74	32	8	0.25	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon44:c.T5537C:p.L1846P	5qC3.2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	74536962	12A2p6	cell line	sgMsh2	74536962	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	103	250	43	0.172	exonic	Fip1l1	nonsynonymous SNV	"Fip1l1:NM_001159573:exon3:c.C148A:p.P50T,Fip1l1:NM_001159574:exon3:c.C148A:p.P50T,Fip1l1:NM_001376964:exon3:c.C148A:p.P50T,Fip1l1:NM_001376965:exon3:c.C148A:p.P50T,Fip1l1:NM_024183:exon3:c.C148A:p.P50T"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9831367	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	74627398	12A2p6	cell line	sgMsh2	74627398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	43	0	0	NA	exonic	Lnx1	nonsynonymous SNV	"Lnx1:NM_001159579:exon3:c.A437G:p.N146S,Lnx1:NM_001159580:exon3:c.A437G:p.N146S,Lnx1:NM_001359074:exon3:c.A260G:p.N87S,Lnx1:NM_010727:exon3:c.A437G:p.N146S,Lnx1:NM_001159577:exon4:c.A737G:p.N246S,Lnx1:NM_001159578:exon5:c.A260G:p.N87S"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.846315	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	116	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9997051	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	75176795	12A2p6	cell line	sgMsh2	75176795	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	67	2	0	0	exonic	Pdgfra	frameshift deletion	"Pdgfra:NM_001083316:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_001347718:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_001347719:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_011058:exon10:c.1493delC:p.A498Efs*16"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GCA	frameshift	NA	NA	NA	-1
M7	chr5	75620996	12A2p6	cell line	sgMsh2	75620996	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	109	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon6:c.G1084T:p.G362W,Kit:NM_021099:exon6:c.G1084T:p.G362W"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5601777	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr5	75962720	12A2p6	cell line	sgMsh2	75962720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	117	3	0	0	exonic	Kdr	nonsynonymous SNV	"Kdr:NM_001363216:exon10:c.T1408C:p.Y470H,Kdr:NM_010612:exon10:c.T1408C:p.Y470H"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Strelka2;Vardict	2	0.2093	86	39	4	0.102564103	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.954060358	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M7	chr5	77060825	12A2p6	cell line	sgMsh2	77060825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	71	0	0	NA	exonic	Thegl	nonsynonymous SNV	Thegl:NM_027970:exon8:c.T1199C:p.V400A	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	77087800	12A2p6	cell line	sgMsh2	77087800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	57	0	0	NA	exonic	Hopx	nonsynonymous SNV	"Hopx:NM_001159901:exon2:c.G161A:p.R54H,Hopx:NM_001159900:exon3:c.G161A:p.R54H,Hopx:NM_175606:exon3:c.G161A:p.R54H"	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7685994	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr5	77320316	12A2p6	cell line	sgMsh2	77320316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	95	126	29	0.23015873	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T462C:p.I154I	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	TTA	synonymous	NA	NA	NA	NA
M7	chr5	77345396	12A2p6	cell line	sgMsh2	77345396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	116	160	42	0.2625	exonic	Polr2b	nonsynonymous SNV	Polr2b:NM_153798:exon23:c.T3224C:p.M1075T	5qC3.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9977529	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	81660332	12A2p6	cell line	sgMsh2	81660332	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	74	22	0	0	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon10:c.C1739A:p.A580D,Adgrl3:NM_001347371:exon11:c.C1754A:p.A585D,Adgrl3:NM_001359826:exon11:c.C1241A:p.A414D,Adgrl3:NM_001359833:exon11:c.C1754A:p.A585D,Adgrl3:NM_001347368:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359830:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359831:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359832:exon12:c.C1943A:p.A648D,Adgrl3:NM_001359834:exon12:c.C1943A:p.A648D,Adgrl3:NM_001347367:exon13:c.C1958A:p.A653D,Adgrl3:NM_001347369:exon13:c.C1958A:p.A653D,Adgrl3:NM_001359828:exon13:c.C1958A:p.A653D,Adgrl3:NM_198702:exon13:c.C1958A:p.A653D"	5qD	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9943408	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	81660366	12A2p6	cell line	sgMsh2	81660366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	57	16	0	0	exonic	Adgrl3	synonymous SNV	"Adgrl3:NM_001359829:exon10:c.C1773T:p.D591D,Adgrl3:NM_001347371:exon11:c.C1788T:p.D596D,Adgrl3:NM_001359826:exon11:c.C1275T:p.D425D,Adgrl3:NM_001359833:exon11:c.C1788T:p.D596D,Adgrl3:NM_001347368:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359830:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359831:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359832:exon12:c.C1977T:p.D659D,Adgrl3:NM_001359834:exon12:c.C1977T:p.D659D,Adgrl3:NM_001347367:exon13:c.C1992T:p.D664D,Adgrl3:NM_001347369:exon13:c.C1992T:p.D664D,Adgrl3:NM_001359828:exon13:c.C1992T:p.D664D,Adgrl3:NM_198702:exon13:c.C1992T:p.D664D"	5qD	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.697425871	2	0.5644851	ACC	synonymous	NA	NA	NA	NA
M7	chr5	86045467	12A2p6	cell line	sgMsh2	86045467	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	134	111	17	0.153153153	exonic	Cenpc1	nonsynonymous SNV	"Cenpc1:NM_007683:exon7:c.G562A:p.A188T,Cenpc1:NM_001345902:exon8:c.G829A:p.A277T,Cenpc1:NM_001345903:exon8:c.G466A:p.A156T"	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.5273288	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	86148870	12A2p6	cell line	sgMsh2	86148870	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	136	59	7	0.118644068	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon11:c.A959T:p.E320V	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.09221458	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	86428627	12A2p6	cell line	sgMsh2	86428627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	129	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon5:c.A364G:p.S122G	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	86661610	12A2p6	cell line	sgMsh2	86661610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	179	0	0	NA	exonic	Tmprss11b	nonsynonymous SNV	Tmprss11b:NM_177024:exon9:c.A1022G:p.Y341C	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999922	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr5	87474945	12A2p6	cell line	sgMsh2	87474945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	113	0	0	NA	exonic	Ugt2a2	nonsynonymous SNV	Ugt2a2:NM_001024148:exon2:c.G163T:p.A55S	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	87559810	12A2p6	cell line	sgMsh2	87559810	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	91	2	0	0	exonic	Sult1d1	synonymous SNV	Sult1d1:NM_016771:exon5:c.A450G:p.P150P	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.268942002	3	0.9993819	CTG	synonymous	NA	NA	NA	NA
M7	chr5	87579863	12A2p6	cell line	sgMsh2	87579863	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	216	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon6:c.C559T:p.R187C	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999999	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	87671530	12A2p6	cell line	sgMsh2	87671530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	175	0	0	NA	exonic	Csn1s1	synonymous SNV	"Csn1s1:NM_001286016:exon8:c.T219C:p.T73T,Csn1s1:NM_007784:exon8:c.T219C:p.T73T"	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.633609124	2	0.9994044	CTA	synonymous	NA	NA	NA	NA
M7	chr5	87887345	12A2p6	cell line	sgMsh2	87887345	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	0	0	NA	exonic	Odam	nonsynonymous SNV	Odam:NM_027128:exon5:c.C167T:p.P56L	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CCC	nonsynonymous	TCCCT	10	TCCCTTCCCT	NA
M7	chr5	87980248	12A2p6	cell line	sgMsh2	87980248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	227	0	0	NA	exonic	Cabs1	nonsynonymous SNV	Cabs1:NM_027631:exon1:c.A757G:p.S253G	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999995	AAG	nonsynonymous	ACTAA	10	ACTAAACTAA	NA
M7	chr5	88463329	12A2p6	cell line	sgMsh2	88463329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	85	0	0	NA	exonic	Ambn	nonsynonymous SNV	"Ambn:NM_001303431:exon6:c.A412G:p.T138A,Ambn:NM_009664:exon6:c.A367G:p.T123A"	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9981135	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	88502641	12A2p6	cell line	sgMsh2	88502641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	97	0	0	NA	exonic	Enam	nonsynonymous SNV	Enam:NM_017468:exon10:c.A1783G:p.S595G	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9939349	AAG	nonsynonymous	GCAA	8	GCAAGCAA	NA
M7	chr5	89582733	12A2p6	cell line	sgMsh2	89582733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	162	0	0	NA	exonic	Npffr2	nonsynonymous SNV	Npffr2:NM_133192:exon4:c.T521C:p.I174T	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999795	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.427	135	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999054	AAG	synonymous	NA	NA	NA	NA
M7	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	137	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999155	AAC	synonymous	A	5	AAAAA	NA
M7	chr5	92070423	12A2p6	cell line	sgMsh2	92070423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	108	321	67	0.208722741	exonic	G3bp2	nonsynonymous SNV	"G3bp2:NM_001080794:exon3:c.T111A:p.N37K,G3bp2:NM_001080795:exon3:c.T111A:p.N37K,G3bp2:NM_001080796:exon3:c.T111A:p.N37K,G3bp2:NM_001080797:exon3:c.T111A:p.N37K,G3bp2:NM_001359195:exon3:c.T111A:p.N37K,G3bp2:NM_001359196:exon3:c.T111A:p.N37K,G3bp2:NM_001359197:exon3:c.T111A:p.N37K,G3bp2:NM_011816:exon3:c.T111A:p.N37K"	5qE2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.09174839	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	92181489	12A2p6	cell line	sgMsh2	92181489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	113	111	19	0.171171171	exonic	Uso1	nonsynonymous SNV	Uso1:NM_019490:exon12:c.T1235C:p.I412T	5qE2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	92933813	12A2p6	cell line	sgMsh2	92933813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	61	5	0	0	exonic	Shroom3	nonsynonymous SNV	Shroom3:NM_015756:exon4:c.A512G:p.Q171R	5qE2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	93187747	12A2p6	cell line	sgMsh2	93187747	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	111	517	123	0.237911025	exonic	Ccni	nonsynonymous SNV	Ccni:NM_017367:exon6:c.T531A:p.H177Q	5qE2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.5906025	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	99234545	12A2p6	cell line	sgMsh2	99234545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	89	66	7	0.106060606	exonic	Rasgef1b	nonsynonymous SNV	"Rasgef1b:NM_145839:exon5:c.A585G:p.I195M,Rasgef1b:NM_181318:exon5:c.A582G:p.I194M"	5qE3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.752125939	1	0.5330647	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	100037641	12A2p6	cell line	sgMsh2	100037641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	89	601	157	0.261231281	exonic	Hnrnpdl	nonsynonymous SNV	Hnrnpdl:NM_016690:exon3:c.A701G:p.K234R	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9897601	CTT	nonsynonymous	T	5	TTTTT	NA
M7	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	69	187	50	0.267379679	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.6357117	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	100533370	12A2p6	cell line	sgMsh2	100533370	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	181	247	53	0.214574899	exonic	Cops4	nonsynonymous SNV	"Cops4:NM_001359203:exon4:c.A386C:p.N129T,Cops4:NM_012001:exon5:c.A539C:p.N180T,Cops4:NM_001359204:exon6:c.A386C:p.N129T"	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.9249705	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	100783064	12A2p6	cell line	sgMsh2	100783064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	79	9	3	0.333333333	exonic	Helq	nonsynonymous SNV	Helq:NM_001081107:exon9:c.A1819G:p.T607A	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	100806887	12A2p6	cell line	sgMsh2	100806887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	31	40	10	0.25	exonic	Abraxas1	nonsynonymous SNV	Abraxas1:NM_172405:exon8:c.A685G:p.I229V	5qE4	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.8065299	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr5	102892466	12A2p6	cell line	sgMsh2	102892466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	0	0	NA	exonic	Arhgap24	nonsynonymous SNV	"Arhgap24:NM_001346585:exon6:c.A1277G:p.K426R,Arhgap24:NM_001286468:exon7:c.A1268G:p.K423R,Arhgap24:NM_146161:exon8:c.A1268G:p.K423R,Arhgap24:NM_029270:exon9:c.A1547G:p.K516R"	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	103555045	12A2p6	cell line	sgMsh2	103555045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	142	89	11	0.123595506	exonic	Ptpn13	nonsynonymous SNV	Ptpn13:NM_011204:exon24:c.G3876T:p.K1292N	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9954105	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr5	103842345	12A2p6	cell line	sgMsh2	103842345	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	66	54	13	0.240740741	exonic	Aff1	synonymous SNV	"Aff1:NM_001080798:exon13:c.A2704C:p.R902R,Aff1:NM_133919:exon13:c.A2680C:p.R894R"	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9930473	AAG	synonymous	AGGCCA	12	AGGCCAAGGCCA	NA
M7	chr5	104337342	12A2p6	cell line	sgMsh2	104337342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	73	0	0	NA	exonic	Mepe	nonsynonymous SNV	Mepe:NM_053172:exon3:c.A347C:p.D116A	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	105118429	12A2p6	cell line	sgMsh2	105118429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	161	0	0	NA	exonic	Gbp4	nonsynonymous SNV	"Gbp4:NM_001359080:exon10:c.T1337C:p.L446P,Gbp4:NM_001359081:exon10:c.T1337C:p.L446P,Gbp4:NM_001256005:exon11:c.T1745C:p.L582P,Gbp4:NM_001359082:exon11:c.T1337C:p.L446P,Gbp4:NM_008620:exon11:c.T1337C:p.L446P,Gbp4:NM_001359079:exon12:c.T1784C:p.L595P"	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999784	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	107619891	12A2p6	cell line	sgMsh2	107619891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	71	39	7	0.179487179	exonic	Rpap2	synonymous SNV	"Rpap2:NM_001163461:exon8:c.C594T:p.G198G,Rpap2:NM_001163462:exon8:c.C357T:p.G119G,Rpap2:NM_001289569:exon8:c.C363T:p.G121G,Rpap2:NM_001289570:exon8:c.C594T:p.G198G,Rpap2:NM_001359916:exon8:c.C567T:p.G189G,Rpap2:NM_001359917:exon8:c.C357T:p.G119G,Rpap2:NM_001359918:exon8:c.C357T:p.G119G,Rpap2:NM_144911:exon8:c.C594T:p.G198G"	5qE5	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	GCG	synonymous	NA	NA	NA	NA
M7	chr5	107720172	12A2p6	cell line	sgMsh2	107720172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	133	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon5:c.A1031G:p.Q344R,Gfi1:NM_001267621:exon6:c.A1229G:p.Q410R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.8165084	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	108104296	12A2p6	cell line	sgMsh2	108104296	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	85	88	20	0.227272727	exonic	Mtf2	synonymous SNV	"Mtf2:NM_001253880:exon11:c.T991C:p.L331L,Mtf2:NM_001253879:exon13:c.T991C:p.L331L,Mtf2:NM_013827:exon13:c.T1297C:p.L433L,Mtf2:NM_001253877:exon14:c.T991C:p.L331L,Mtf2:NM_001253878:exon14:c.T991C:p.L331L,Mtf2:NM_001359088:exon14:c.T1330C:p.L444L,Mtf2:NM_001359089:exon15:c.T991C:p.L331L"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.6721378	GTT	synonymous	NA	NA	NA	NA
M7	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	44	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8683236	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	108604387	12A2p6	cell line	sgMsh2	108604387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	44	90	14	0.155555556	exonic	Gak	nonsynonymous SNV	"Gak:NM_001359924:exon8:c.A521G:p.N174S,Gak:NM_001282052:exon9:c.A368G:p.N123S,Gak:NM_001282051:exon10:c.A521G:p.N174S,Gak:NM_001359922:exon10:c.A521G:p.N174S,Gak:NM_001359923:exon10:c.A521G:p.N174S,Gak:NM_153569:exon10:c.A1004G:p.N335S"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.7185492	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	108649182	12A2p6	cell line	sgMsh2	108649182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	89	24	7	0.291666667	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon22:c.C1961T:p.A654V,Dgkq:NM_199011:exon22:c.C2666T:p.A889V"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr5	108680967	12A2p6	cell line	sgMsh2	108680967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	88	8	2	0.25	exonic	Idua	nonsynonymous SNV	"Idua:NM_172997:exon8:c.T935G:p.F312C,Idua:NM_008325:exon9:c.T1076G:p.F359C"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	108797917	12A2p6	cell line	sgMsh2	108797917	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	394	0	0	NA	exonic	Vmn2r8	nonsynonymous SNV	Vmn2r8:NM_001104620:exon6:c.A1823T:p.K608M	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	1.04E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	109340546	12A2p6	cell line	sgMsh2	109340546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	210	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon3:c.T1284C:p.S428S,Vmn2r16:NM_001385189:exon3:c.T1284C:p.S428S"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.6627164	GTG	synonymous	NA	NA	NA	NA
M7	chr5	109452832	12A2p6	cell line	sgMsh2	109452832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	389	0	0	NA	exonic	Vmn2r17	synonymous SNV	"Vmn2r17:NM_001104628:exon6:c.A1995G:p.T665T,Vmn2r17:NM_001385190:exon6:c.A1992G:p.T664T"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	1.05E-09	CAG	synonymous	NA	NA	NA	NA
M7	chr5	109452875	12A2p6	cell line	sgMsh2	109452875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	391	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon6:c.A2038G:p.T680A,Vmn2r17:NM_001385190:exon6:c.A2035G:p.T679A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	1.05E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	110189662	12A2p6	cell line	sgMsh2	110189662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	73	29	8	0.275862069	exonic	Golga3	synonymous SNV	"Golga3:NM_001347389:exon7:c.A1335G:p.L445L,Golga3:NM_008146:exon7:c.A1215G:p.L405L"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.5742288	TAC	synonymous	NA	NA	NA	NA
M7	chr5	110269678	12A2p6	cell line	sgMsh2	110269678	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	11	52	13	0.25	exonic	Pgam5	synonymous SNV	"Pgam5:NM_001163538:exon1:c.C162A:p.R54R,Pgam5:NM_028273:exon1:c.C162A:p.R54R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.09699364	CGC	synonymous	NA	NA	NA	NA
M7	chr5	110303958	12A2p6	cell line	sgMsh2	110303958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	138	43	14	0.325581395	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon23:c.A2665G:p.T889A	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9926164	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	110312095	12A2p6	cell line	sgMsh2	110312095	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	90	54	11	0.203703704	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon27:c.T3364G:p.F1122V	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8982759	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	110655672	12A2p6	cell line	sgMsh2	110655672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	77	38	9	0.236842105	exonic	Ddx51	nonsynonymous SNV	Ddx51:NM_027156:exon7:c.T1019C:p.L340P	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9974654	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	111085096	12A2p6	cell line	sgMsh2	111085096	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	71	4	1	0.25	exonic	Ttc28	synonymous SNV	Ttc28:NM_001267622:exon3:c.G438C:p.G146G	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	GGC	synonymous	GGCT	8	GGCTGGCT	NA
M7	chr5	112246778	12A2p6	cell line	sgMsh2	112246778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	35	0	0	NA	exonic	Cryba4	nonsynonymous SNV	"Cryba4:NM_001312884:exon5:c.T445C:p.Y149H,Cryba4:NM_021351:exon6:c.T484C:p.Y162H"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.711100888	1	0.6462182	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	114404690	12A2p6	cell line	sgMsh2	114404690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	59	9	0.152542373	exonic	Ube3b	nonsynonymous SNV	"Ube3b:NM_001331219:exon14:c.A926C:p.D309A,Ube3b:NM_054093:exon15:c.A1607C:p.D536A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9807891	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	114446235	12A2p6	cell line	sgMsh2	114446235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	121	79	18	0.227848101	exonic	Mvk	nonsynonymous SNV	"Mvk:NM_001306205:exon3:c.A155G:p.N52S,Mvk:NM_023556:exon3:c.A155G:p.N52S"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	114733245	12A2p6	cell line	sgMsh2	114733245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	46	73	16	0.219178082	exonic	Git2	nonsynonymous SNV	"Git2:NM_001077360:exon16:c.A1711G:p.T571A,Git2:NM_001077359:exon17:c.A1714G:p.T572A,Git2:NM_019834:exon17:c.A1798G:p.T600A,Git2:NM_001347400:exon18:c.A1951G:p.T651A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9821382	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	114937417	12A2p6	cell line	sgMsh2	114937417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	104	20	11	0.55	exonic	Oasl1	stoploss	"Oasl1:NM_001359946:exon5:c.A998T:p.X333L,Oasl1:NM_001359945:exon6:c.A1535T:p.X512L,Oasl1:NM_145209:exon7:c.A1535T:p.X512L"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	TAG	nonsynonymous	AGCT	8	AGCTAGCT	NA
M7	chr5	115127330	12A2p6	cell line	sgMsh2	115127330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	233	73	19	0.260273973	exonic	Unc119b	nonsynonymous SNV	Unc119b:NM_175352:exon3:c.T442C:p.F148L	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	115295713	12A2p6	cell line	sgMsh2	115295713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	215	40	14	0.35	exonic	Coq5	nonsynonymous SNV	Coq5:NM_026504:exon6:c.T818C:p.V273A	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999999	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	115341076	12A2p6	cell line	sgMsh2	115341076	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	23	25	7	0.28	exonic	Gatc	nonsynonymous SNV	Gatc:NM_029645:exon1:c.A74T:p.N25I	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	9.98E-08	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr5	115587846	12A2p6	cell line	sgMsh2	115587846	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	67	19	0.28358209	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon17:c.T1670A:p.L557H	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	115640184	12A2p6	cell line	sgMsh2	115640184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	78	148	40	0.27027027	exonic	Rab35	nonsynonymous SNV	Rab35:NM_198163:exon3:c.T208C:p.F70L	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.09910775	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	55	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9912256	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	117555391	12A2p6	cell line	sgMsh2	117555391	T	C	SNV	Mutect2;Vardict	2	0.087	46	0	0	NA	exonic	Ksr2	synonymous SNV	Ksr2:NM_001312914:exon4:c.T903C:p.H301H	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.396575495	2	0.8333573	ATC	synonymous	CATC	8	CATCCATC	NA
M7	chr5	117555453	12A2p6	cell line	sgMsh2	117555453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	48	0	0	NA	exonic	Ksr2	nonsynonymous SNV	Ksr2:NM_001312914:exon4:c.G965A:p.R322H	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	118755543	12A2p6	cell line	sgMsh2	118755543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	12	2	0.166666667	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon27:c.T5913C:p.A1971A,Med13l:NM_172424:exon27:c.T5886C:p.A1962A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	CTG	synonymous	NA	NA	NA	NA
M7	chr5	119883211	12A2p6	cell line	sgMsh2	119883211	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	98	0	0	NA	exonic	Tbx5	synonymous SNV	Tbx5:NM_011537:exon9:c.C1281T:p.S427S	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	CCG	synonymous	NA	NA	NA	NA
M7	chr5	120116639	12A2p6	cell line	sgMsh2	120116639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	90	31	7	0.225806452	exonic	Rbm19	nonsynonymous SNV	Rbm19:NM_028762:exon1:c.T26C:p.L9P	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9962228	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	120609786	12A2p6	cell line	sgMsh2	120609786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	40	24	8	0.333333333	exonic	Rita1	nonsynonymous SNV	"Rita1:NM_029096:exon3:c.A446G:p.H149R,Rita1:NM_133908:exon4:c.A446G:p.H149R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.7306952	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	121353955	12A2p6	cell line	sgMsh2	121353955	A	G	SNV	Mutect2;Vardict	2	0.102	39	28	2	0.071428571	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon64:c.A11356G:p.S3786G	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.46495058	2	0.8957634	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	121384041	12A2p6	cell line	sgMsh2	121384041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	136	29	5	0.172413793	exonic	Trafd1	nonsynonymous SNV	"Trafd1:NM_001163470:exon2:c.T46C:p.C16R,Trafd1:NM_001359947:exon2:c.T46C:p.C16R,Trafd1:NM_172275:exon2:c.T46C:p.C16R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	121434925	12A2p6	cell line	sgMsh2	121434925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	113	87	16	0.183908046	exonic	Naa25	synonymous SNV	Naa25:NM_172722:exon18:c.T2106C:p.S702S	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	GTC	synonymous	NA	NA	NA	NA
M7	chr5	121493708	12A2p6	cell line	sgMsh2	121493708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	107	0	0	NA	exonic	Tmem116	synonymous SNV	"Tmem116:NM_001161626:exon8:c.A642G:p.A214A,Tmem116:NM_029912:exon8:c.A282G:p.A94A,Tmem116:NM_001161627:exon9:c.A747G:p.A249A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	CAG	synonymous	NA	NA	NA	NA
M7	chr5	121501868	12A2p6	cell line	sgMsh2	121501868	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	163	0	0	NA	exonic	Adam1b	synonymous SNV	Adam1b:NM_172125:exon1:c.T1113C:p.S371S	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999807	CAC	synonymous	NA	NA	NA	NA
M7	chr5	121817841	12A2p6	cell line	sgMsh2	121817841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	85	42	8	0.19047619	exonic	Sh2b3	nonsynonymous SNV	"Sh2b3:NM_001306128:exon8:c.G1547A:p.R516Q,Sh2b3:NM_008507:exon8:c.G1577A:p.R526Q,Sh2b3:NM_001306126:exon9:c.G1577A:p.R526Q,Sh2b3:NM_001306127:exon9:c.G1577A:p.R526Q"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8439845	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr5	121817963	12A2p6	cell line	sgMsh2	121817963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	62	36	6	0.166666667	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon8:c.A1425G:p.P475P,Sh2b3:NM_008507:exon8:c.A1455G:p.P485P,Sh2b3:NM_001306126:exon9:c.A1455G:p.P485P,Sh2b3:NM_001306127:exon9:c.A1455G:p.P485P"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.7138277	GTG	synonymous	NA	NA	NA	NA
M7	chr5	122102770	12A2p6	cell line	sgMsh2	122102770	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	120	0	0	NA	exonic	Myl2	synonymous SNV	"Myl2:NM_001384326:exon3:c.A168G:p.L56L,Myl2:NM_010861:exon3:c.A168G:p.L56L,Myl2:NM_001384330:exon5:c.A111G:p.L37L,Myl2:NM_001384327:exon6:c.A111G:p.L37L,Myl2:NM_001384331:exon6:c.A111G:p.L37L,Myl2:NM_001384329:exon7:c.A111G:p.L37L,Myl2:NM_001384328:exon8:c.A111G:p.L37L"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	TAG	synonymous	NA	NA	NA	NA
M7	chr5	122334415	12A2p6	cell line	sgMsh2	122334415	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	137	9	0	0	exonic	Rad9b	nonsynonymous SNV	"Rad9b:NM_001382853:exon7:c.C682G:p.L228V,Rad9b:NM_144912:exon7:c.C682G:p.L228V"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999155	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	122461760	12A2p6	cell line	sgMsh2	122461760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	164	505	117	0.231683168	exonic	Atp2a2	nonsynonymous SNV	"Atp2a2:NM_001110140:exon13:c.A1567G:p.R523G,Atp2a2:NM_009722:exon13:c.A1567G:p.R523G"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999817	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	122559719	12A2p6	cell line	sgMsh2	122559719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	262	39	9	0.230769231	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon15:c.A1475G:p.H492R,Ift81:NM_001358917:exon16:c.A1694G:p.H565R,Ift81:NM_001358918:exon16:c.A1526G:p.H509R,Ift81:NM_009879:exon16:c.A1694G:p.H565R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	122763955	12A2p6	cell line	sgMsh2	122763955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	87	5	0	0	exonic	Camkk2	nonsynonymous SNV	"Camkk2:NM_001199676:exon2:c.A290G:p.K97R,Camkk2:NM_145358:exon2:c.A290G:p.K97R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8442361	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	122883335	12A2p6	cell line	sgMsh2	122883335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	51	23	5	0.217391304	exonic	Kdm2b	nonsynonymous SNV	"Kdm2b:NM_001378864:exon3:c.A407G:p.H136R,Kdm2b:NM_001378865:exon3:c.A407G:p.H136R,Kdm2b:NM_013910:exon3:c.A407G:p.H136R,Kdm2b:NM_001003953:exon14:c.A2006G:p.H669R,Kdm2b:NM_001378863:exon14:c.A1988G:p.H663R"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9621956	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	123029094	12A2p6	cell line	sgMsh2	123029094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	69	32	7	0.21875	exonic	Orai1	nonsynonymous SNV	Orai1:NM_175423:exon2:c.A329G:p.Q110R	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	123119497	12A2p6	cell line	sgMsh2	123119497	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	73	7	0	0	exonic	Rhof	nonsynonymous SNV	Rhof:NM_175092:exon5:c.A569G:p.K190R	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.259825324	3	0.9982294	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	123182676	12A2p6	cell line	sgMsh2	123182676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	155	0	0	NA	exonic	Hpd	nonsynonymous SNV	Hpd:NM_008277:exon1:c.A1C:p.M1L	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	123646269	12A2p6	cell line	sgMsh2	123646269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	73	63	13	0.206349206	exonic	Clip1	synonymous SNV	"Clip1:NM_001291229:exon5:c.T816C:p.A272A,Clip1:NM_001347468:exon5:c.T816C:p.A272A,Clip1:NM_001359220:exon5:c.T816C:p.A272A,Clip1:NM_001359221:exon5:c.T816C:p.A272A,Clip1:NM_001359222:exon5:c.T816C:p.A272A,Clip1:NM_001359223:exon5:c.T816C:p.A272A,Clip1:NM_001359224:exon5:c.T816C:p.A272A,Clip1:NM_019765:exon5:c.T816C:p.A272A"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8879829	GAG	synonymous	NA	NA	NA	NA
M7	chr5	123729278	12A2p6	cell line	sgMsh2	123729278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	133	189	37	0.195767196	exonic	Rsrc2	nonsynonymous SNV	"Rsrc2:NM_001005525:exon10:c.A1204G:p.N402D,Rsrc2:NM_001359864:exon10:c.A1201G:p.N401D,Rsrc2:NM_025438:exon11:c.A1030G:p.N344D,Rsrc2:NM_001359861:exon12:c.A1030G:p.N344D,Rsrc2:NM_001359866:exon12:c.A1027G:p.N343D,Rsrc2:NM_001359860:exon13:c.A1030G:p.N344D,Rsrc2:NM_001359865:exon13:c.A1027G:p.N343D"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	83	35	4	0.114285714	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9888292	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr5	123802402	12A2p6	cell line	sgMsh2	123802402	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.203	72	45	11	0.244444444	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon48:c.G5062A:p.A1688T	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9837298	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr5	124123998	12A2p6	cell line	sgMsh2	124123998	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	46	3	1	0.333333333	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon18:c.C2779T:p.H927Y,Pitpnm2:NM_011256:exon18:c.C2617T:p.H873Y"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8390119	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr5	124410263	12A2p6	cell line	sgMsh2	124410263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	141	228	42	0.184210526	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon4:c.T354G:p.T118T,Sbno1:NM_001359978:exon4:c.T354G:p.T118T,Sbno1:NM_001359979:exon4:c.T351G:p.T117T"	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.5077987	AAG	synonymous	NA	NA	NA	NA
M7	chr5	124646720	12A2p6	cell line	sgMsh2	124646720	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	61	58	13	0.224137931	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon9:c.G942C:p.M314I	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.6634155	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr5	124817217	12A2p6	cell line	sgMsh2	124817217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	33	0	0	NA	exonic	Dnah10	synonymous SNV	Dnah10:NM_019536:exon60:c.A10176G:p.K3392K	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9700852	AAC	synonymous	NA	NA	NA	NA
M7	chr5	124832622	12A2p6	cell line	sgMsh2	124832622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	134	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon77:c.C13475T:p.A4492V	5qF	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9996832	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr5	125048197	12A2p6	cell line	sgMsh2	125048197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	42	132	37	0.28030303	exonic	Ncor2	synonymous SNV	"Ncor2:NM_001253905:exon17:c.G1890A:p.E630E,Ncor2:NM_001253904:exon21:c.G2022A:p.E674E,Ncor2:NM_011424:exon21:c.G2547A:p.E849E"	5qG1.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9677692	CCT	synonymous	NA	NA	NA	NA
M7	chr5	125084963	12A2p6	cell line	sgMsh2	125084963	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	61	55	13	0.236363636	exonic	Ncor2	nonsynonymous SNV	"Ncor2:NM_001253905:exon8:c.A589T:p.M197L,Ncor2:NM_001253904:exon12:c.A721T:p.M241L,Ncor2:NM_011424:exon12:c.A1246T:p.M416L"	5qG1.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9937412	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	125622767	12A2p6	cell line	sgMsh2	125622767	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	129	8	4	0.5	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon2:c.T368A:p.L123H	5qG1.1	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.999867	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	127359899	12A2p6	cell line	sgMsh2	127359899	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	129	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon2:c.C451G:p.H151D	5qG1.2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.999831	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr5	127650704	12A2p6	cell line	sgMsh2	127650704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	92	1	0	0	exonic	Glt1d1	nonsynonymous SNV	Glt1d1:NM_177005:exon3:c.T239C:p.V80A	5qG1.2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	128601265	12A2p6	cell line	sgMsh2	128601265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	20	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A48G:p.I16M	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9394328	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	128601785	12A2p6	cell line	sgMsh2	128601785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	47	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.C568T:p.R190C	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9862553	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr5	128601801	12A2p6	cell line	sgMsh2	128601801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	60	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A584G:p.N195S	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	128602175	12A2p6	cell line	sgMsh2	128602175	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	106	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.T958G:p.F320V	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9956061	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	129569706	12A2p6	cell line	sgMsh2	129569706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	36	86	16	0.186046512	exonic	Sfswap	nonsynonymous SNV	"Sfswap:NM_001359952:exon16:c.A2213G:p.Q738R,Sfswap:NM_001378917:exon16:c.A2507G:p.Q836R,Sfswap:NM_172276:exon16:c.A2591G:p.Q864R,Sfswap:NM_001378915:exon17:c.A2744G:p.Q915R,Sfswap:NM_001378916:exon17:c.A2660G:p.Q887R"	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.688309193	1	0.5820325	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	129770720	12A2p6	cell line	sgMsh2	129770720	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	52	167	44	0.263473054	exonic	Psph	nonsynonymous SNV	Psph:NM_133900:exon5:c.G161A:p.G54E	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	130258986	12A2p6	cell line	sgMsh2	130258986	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	127	57	2	0.035087719	exonic	Tyw1	nonsynonymous SNV	"Tyw1:NM_001015876:exon2:c.T58C:p.F20L,Tyw1:NM_178897:exon2:c.T58C:p.F20L"	5qG1.3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.200566917	3	1.50E-08	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	130877695	12A2p6	cell line	sgMsh2	130877695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	44	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1634G:p.K545R	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9837467	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	131086045	12A2p6	cell line	sgMsh2	131086045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	70	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon4:c.T616C:p.Y206H	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.952339	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	134135628	12A2p6	cell line	sgMsh2	134135628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	60	12	2	0.166666667	exonic	Castor2	nonsynonymous SNV	Castor2:NM_030719:exon4:c.T427C:p.F143L	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9933783	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	88	18	2	0.111111111	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	134243910	12A2p6	cell line	sgMsh2	134243910	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	91	336	83	0.24702381	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080749:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359066:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359067:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080747:exon26:c.A2404C:p.S802R,Gtf2i:NM_001359063:exon26:c.A2410C:p.S804R,Gtf2i:NM_001359065:exon26:c.A2404C:p.S802R,Gtf2i:NM_010365:exon26:c.A2410C:p.S804R,Gtf2i:NM_001080746:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359062:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359064:exon27:c.A2410C:p.S804R"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.642725802	2	0.9450365	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	134263759	12A2p6	cell line	sgMsh2	134263759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	101	373	72	0.193029491	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon13:c.T1010G:p.I337S,Gtf2i:NM_001080749:exon13:c.T1010G:p.I337S,Gtf2i:NM_001359066:exon13:c.T1010G:p.I337S,Gtf2i:NM_001359067:exon13:c.T1010G:p.I337S,Gtf2i:NM_001080747:exon14:c.T1067G:p.I356S,Gtf2i:NM_001359063:exon14:c.T1073G:p.I358S,Gtf2i:NM_001359065:exon14:c.T1067G:p.I356S,Gtf2i:NM_010365:exon14:c.T1073G:p.I358S,Gtf2i:NM_001080746:exon15:c.T1130G:p.I377S,Gtf2i:NM_001359062:exon15:c.T1130G:p.I377S,Gtf2i:NM_001359064:exon15:c.T1073G:p.I358S"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	0.8778601	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	134726498	12A2p6	cell line	sgMsh2	134726498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	74	0	0	NA	exonic	Eln	nonsynonymous SNV	Eln:NM_007925:exon11:c.A700G:p.T234A	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.51509231	2	0.9918282	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	134915019	12A2p6	cell line	sgMsh2	134915019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	175	0	0	NA	exonic	Cldn13	nonsynonymous SNV	Cldn13:NM_020504:exon1:c.T311C:p.I104T	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999902	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	135064529	12A2p6	cell line	sgMsh2	135064529	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.194	72	16	0	0	exonic	Bud23;Dnajc30	frameshift insertion	"Bud23:NM_001363325:exon1:c.14dupA:p.T6Dfs*6,Dnajc30:NM_025362:exon1:c.280dupT:p.L94Ffs*10"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.884317771	NA	NA	TCT	frameshift	NA	NA	NA	1
M7	chr5	135121526	12A2p6	cell line	sgMsh2	135121526	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	54	1	0	0	exonic	Mlxipl	nonsynonymous SNV	Mlxipl:NM_021455:exon3:c.C421A:p.P141T	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9907182	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr5	135217467	12A2p6	cell line	sgMsh2	135217467	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	98	124	24	0.193548387	exonic	Baz1b	nonsynonymous SNV	Baz1b:NM_011714:exon7:c.A1769C:p.N590T	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	135440145	12A2p6	cell line	sgMsh2	135440145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	111	49	16	0.326530612	exonic	Hip1	synonymous SNV	"Hip1:NM_001382848:exon11:c.A795G:p.L265L,Hip1:NM_146001:exon11:c.A897G:p.L299L"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.999175	GTA	synonymous	NA	NA	NA	NA
M7	chr5	135734871	12A2p6	cell line	sgMsh2	135734871	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.265	114	233	40	0.17167382	exonic	Por	nonsynonymous SNV	Por:NM_008898:exon16:c.T1951G:p.F651V	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	135734873	12A2p6	cell line	sgMsh2	135734873	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.265	114	228	39	0.171052632	exonic	Por	synonymous SNV	Por:NM_008898:exon16:c.T1953C:p.F651F	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	TTG	synonymous	NA	NA	NA	NA
M7	chr5	135967893	12A2p6	cell line	sgMsh2	135967893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	39	0	0	NA	exonic	Ssc4d	nonsynonymous SNV	Ssc4d:NM_001160366:exon4:c.T353C:p.V118A	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9785304	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	174	1	0	0	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999896	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr5	136064125	12A2p6	cell line	sgMsh2	136064125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	88	4	1	0.25	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A704G:p.Y235C,Upk3bl:NM_027158:exon6:c.A707G:p.Y236C"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	1	0.9986404	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	136091264	12A2p6	cell line	sgMsh2	136091264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	29	18	5	0.277777778	exonic	Rasa4	nonsynonymous SNV	"Rasa4:NM_001039103:exon3:c.T193C:p.F65L,Rasa4:NM_133914:exon3:c.T193C:p.F65L"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9409357	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	136224301	12A2p6	cell line	sgMsh2	136224301	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	65	3	1	0.333333333	exonic	Sh2b2	nonsynonymous SNV	"Sh2b2:NM_001302938:exon6:c.A1016T:p.E339V,Sh2b2:NM_001302939:exon6:c.A1016T:p.E339V,Sh2b2:NM_018825:exon6:c.A1016T:p.E339V"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9950055	CTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M7	chr5	137031401	12A2p6	cell line	sgMsh2	137031401	C	-	Deletion	Strelka2;Vardict	2	0.3636	11	0	0	NA	exonic	Vgf	frameshift deletion	Vgf:NM_001039385:exon2:c.416delC:p.P141Lfs*21	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7	chr5	137297937	12A2p6	cell line	sgMsh2	137297937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	50	201	47	0.233830846	exonic	Srrt	synonymous SNV	"Srrt:NM_001109909:exon13:c.T1506C:p.R502R,Srrt:NM_001109910:exon13:c.T1506C:p.R502R,Srrt:NM_001359602:exon13:c.T1506C:p.R502R,Srrt:NM_031405:exon13:c.T1506C:p.R502R"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9883813	CAC	synonymous	NA	NA	NA	NA
M7	chr5	137445368	12A2p6	cell line	sgMsh2	137445368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon27:c.A5666G:p.D1889G	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9969832	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	137555077	12A2p6	cell line	sgMsh2	137555077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	104	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon4:c.T350C:p.V117A	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9989863	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	137587025	12A2p6	cell line	sgMsh2	137587025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	exonic	Tfr2	nonsynonymous SNV	"Tfr2:NM_001289507:exon18:c.T2318C:p.L773P,Tfr2:NM_001289511:exon19:c.T2318C:p.L773P,Tfr2:NM_001359206:exon19:c.T2318C:p.L773P,Tfr2:NM_001289509:exon20:c.T2318C:p.L773P,Tfr2:NM_015799:exon20:c.T2318C:p.L773P"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9785304	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	137857515	12A2p6	cell line	sgMsh2	137857515	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	185	8	0	0	exonic	Pilrb1	frameshift deletion	Pilrb1:NM_133209:exon2:c.113delA:p.N38Mfs*36	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr5	138179501	12A2p6	cell line	sgMsh2	138179501	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	33	159	31	0.194968553	exonic	Taf6	nonsynonymous SNV	"Taf6:NM_001356600:exon14:c.C1568T:p.A523V,Taf6:NM_001356601:exon14:c.C1568T:p.A523V,Taf6:NM_001356602:exon14:c.C1568T:p.A523V,Taf6:NM_009315:exon14:c.C1568T:p.A523V"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9700852	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr5	138183578	12A2p6	cell line	sgMsh2	138183578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	72	66	11	0.166666667	exonic	Taf6	synonymous SNV	"Taf6:NM_001356600:exon4:c.C387T:p.V129V,Taf6:NM_001356601:exon4:c.C387T:p.V129V,Taf6:NM_001356602:exon4:c.C387T:p.V129V,Taf6:NM_009315:exon4:c.C387T:p.V129V"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	AGA	synonymous	NA	NA	NA	NA
M7	chr5	138646748	12A2p6	cell line	sgMsh2	138646748	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	220	10	0	0	exonic	A430033K04Rik	synonymous SNV	A430033K04Rik:NM_183025:exon4:c.A894G:p.S298S	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1	CAT	synonymous	NA	NA	NA	NA
M7	chr5	138646905	12A2p6	cell line	sgMsh2	138646905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	89	10	2	0.2	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1051G:p.T351A	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	138647722	12A2p6	cell line	sgMsh2	138647722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	106	6	1	0.166666667	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1868G:p.Y623C	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.743009261	2	0.6070546	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	138755649	12A2p6	cell line	sgMsh2	138755649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	57	3	1	0.333333333	exonic	Fam20c	nonsynonymous SNV	Fam20c:NM_030565:exon1:c.T14C:p.L5P	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9921594	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	139152877	12A2p6	cell line	sgMsh2	139152877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	14	5	0.357142857	exonic	Dnaaf5	nonsynonymous SNV	Dnaaf5:NM_001081265:exon3:c.T812C:p.L271P	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	134	70	16	0.228571429	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	139235573	12A2p6	cell line	sgMsh2	139235573	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	65	102	27	0.264705882	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon9:c.C1042T:p.H348Y,Sun1:NM_001256117:exon11:c.C1141T:p.H381Y,Sun1:NM_001359496:exon12:c.C1207T:p.H403Y,Sun1:NM_001256115:exon13:c.C1399T:p.H467Y,Sun1:NM_001256116:exon13:c.C1318T:p.H440Y,Sun1:NM_001359494:exon13:c.C1318T:p.H440Y,Sun1:NM_024451:exon14:c.C1510T:p.H504Y"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9145093	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr5	139392809	12A2p6	cell line	sgMsh2	139392809	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	135	5	0	0	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T365C:p.L122P,Gpr146:NM_001362206:exon2:c.T365C:p.L122P,Gpr146:NM_030258:exon2:c.T365C:p.L122P"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999054	CTG	nonsynonymous	CACTG	11	CACTGCACTGC	NA
M7	chr5	139392815	12A2p6	cell line	sgMsh2	139392815	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	134	4	0	0	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T371G:p.L124R,Gpr146:NM_001362206:exon2:c.T371G:p.L124R,Gpr146:NM_030258:exon2:c.T371G:p.L124R"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr5	139806938	12A2p6	cell line	sgMsh2	139806938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	77	1	1	1	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon6:c.A790G:p.I264V,Tmem184a:NM_001161548:exon7:c.A862G:p.I288V"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9974654	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	139813029	12A2p6	cell line	sgMsh2	139813030	CT	GC	DBS	Mutect2;Vardict	2	0.235	78	2	0	0	exonic	Tmem184a	nonframeshift substitution	"Tmem184a:NM_144914:exon1:c.163_164GC:p.S55A,Tmem184a:NM_001161548:exon2:c.235_236GC:p.S79A"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr5	140665374	12A2p6	cell line	sgMsh2	140665374	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	68	21	5	0.238095238	exonic	Iqce	nonsynonymous SNV	"Iqce:NM_001347517:exon23:c.C2278T:p.P760S,Iqce:NM_028833:exon23:c.C2329T:p.P777S"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9957838	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr5	140718582	12A2p6	cell line	sgMsh2	140718582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	60	23	7	0.304347826	exonic	Brat1	synonymous SNV	"Brat1:NM_001276287:exon14:c.A2589G:p.E863E,Brat1:NM_181066:exon14:c.A2454G:p.E818E"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.592584073	2	0.09816731	AAG	synonymous	NA	NA	NA	NA
M7	chr5	141953112	12A2p6	cell line	sgMsh2	141953112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	54	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon9:c.T1289C:p.L430S	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9907182	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr5	142161926	12A2p6	cell line	sgMsh2	142161926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	38	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon37:c.A5312G:p.K1771R	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9773057	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	142188130	12A2p6	cell line	sgMsh2	142188130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	71	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon42:c.A6052G:p.K2018E	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8545195	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr5	142451467	12A2p6	cell line	sgMsh2	142451467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	131	45	7	0.155555556	exonic	Foxk1	nonsynonymous SNV	Foxk1:NM_199068:exon5:c.A1037G:p.N346S	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998813	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	142472335	12A2p6	cell line	sgMsh2	142472335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	92	23	2	0.086956522	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon10:c.A1262C:p.D421A	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	142885825	12A2p6	cell line	sgMsh2	142885825	T	A	SNV	Mutect2;Vardict	2	0.054	77	18	1	0.055555556	exonic	Fbxl18	nonsynonymous SNV	Fbxl18:NM_001033312:exon3:c.A1462T:p.M488L	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.246150307	3	0.9995145	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	143202035	12A2p6	cell line	sgMsh2	143202035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	176	0	0	NA	exonic	Spdye4b	nonsynonymous SNV	"Spdye4b:NM_001384193:exon6:c.T473C:p.M158T,Spdye4b:NM_177880:exon6:c.T443C:p.M148T"	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999908	ATG	nonsynonymous	GGA	9	GGAGGAGGA	NA
M7	chr5	143254581	12A2p6	cell line	sgMsh2	143254581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	27	13	6	0.461538462	exonic	Zfp316	nonsynonymous SNV	Zfp316:NM_017467:exon7:c.A1682G:p.D561G	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	144001449	12A2p6	cell line	sgMsh2	144001449	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	152	240	41	0.170833333	exonic	Ccz1	synonymous SNV	Ccz1:NM_177682:exon8:c.A702T:p.L234L	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999639	CTA	synonymous	NA	NA	NA	NA
M7	chr5	144834242	12A2p6	cell line	sgMsh2	144834242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	198	57	16	0.280701754	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon55:c.A8393G:p.Y2798C	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999973	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	144857455	12A2p6	cell line	sgMsh2	144857455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	112	92	23	0.25	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon70:c.A11135G:p.N3712S	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996512	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr5	145044767	12A2p6	cell line	sgMsh2	145044767	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	186	0	0	NA	exonic	1700018F24Rik	frameshift deletion	1700018F24Rik:NM_027069:exon4:c.411delT:p.F139Lfs*8	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.815942685	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr5	145187147	12A2p6	cell line	sgMsh2	145187147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	154	742	151	0.203504043	exonic	Atp5j2	nonsynonymous SNV	Atp5j2:NM_020582:exon2:c.A100G:p.I34V	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999678	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr5	145243604	12A2p6	cell line	sgMsh2	145243604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	40	77	16	0.207792208	exonic	Zfp655	synonymous SNV	Zfp655:NM_028298:exon4:c.T271C:p.L91L	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.6862151	GTT	synonymous	NA	NA	NA	NA
M7	chr5	145855079	12A2p6	cell line	sgMsh2	145855079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	320	0	0	NA	exonic	Cyp3a11	nonsynonymous SNV	Cyp3a11:NM_007818:exon13:c.A1503G:p.I501M	5qG2	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9994583	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr5	146834249	12A2p6	cell line	sgMsh2	146834249	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	196	10	0	0	exonic	Rpl21	frameshift deletion	Rpl21:NM_019647:exon2:c.54delT:p.F19Lfs*21	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7	chr5	146955155	12A2p6	cell line	sgMsh2	146955155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	100	202	35	0.173267327	exonic	Gtf3a	nonsynonymous SNV	Gtf3a:NM_025652:exon8:c.A899C:p.D300A	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr5	147536534	12A2p6	cell line	sgMsh2	147536534	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	99	55	4	0.072727273	exonic	Pan3	nonsynonymous SNV	"Pan3:NM_028291:exon14:c.T2021C:p.L674P,Pan3:NM_001359433:exon15:c.T1247C:p.L416P"	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.355550444	3	0.6809577	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr5	149453408	12A2p6	cell line	sgMsh2	149453408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	169	2	1	0.5	exonic	Tex26	synonymous SNV	"Tex26:NM_001310765:exon2:c.A6G:p.V2V,Tex26:NM_001310763:exon3:c.A258G:p.V86V,Tex26:NM_001310764:exon3:c.A6G:p.V2V,Tex26:NM_029464:exon3:c.A261G:p.V87V"	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9999073	TAA	synonymous	A	5	AAAAA	NA
M7	chr5	150541200	12A2p6	cell line	sgMsh2	150541200	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	186	13	3	0.230769231	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon11:c.A4428C:p.Q1476H,Brca2:NM_009765:exon11:c.A4428C:p.Q1476H"	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7374184	AAT	nonsynonymous	GTCA	8	GTCAGTCA	NA
M7	chr5	150554424	12A2p6	cell line	sgMsh2	150554424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	7	1	0.142857143	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon18:c.A8009G:p.Q2670R,Brca2:NM_009765:exon18:c.A8009G:p.Q2670R"	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9930346	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	150569239	12A2p6	cell line	sgMsh2	150569239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	92	12	1	0.083333333	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon27:c.A9718G:p.S3240G,Brca2:NM_009765:exon27:c.A9718G:p.S3240G"	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9949892	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr5	150988521	12A2p6	cell line	sgMsh2	150988521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	146	0	0	NA	exonic	Kl	synonymous SNV	Kl:NM_013823:exon4:c.T1734C:p.S578S	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999493	CTG	synonymous	NA	NA	NA	NA
M7	chr5	151645654	12A2p6	cell line	sgMsh2	151645654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	82	65	16	0.246153846	exonic	Rfc3	nonsynonymous SNV	Rfc3:NM_027009:exon5:c.A437T:p.H146L	5qG3	chr5-3344373-151647482	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr6	3532184	12A2p6	cell line	sgMsh2	3532184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	177	68	15	0.220588235	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon10:c.C686A:p.T229N,Vps50:NM_001167751:exon10:c.C686A:p.T229N,Vps50:NM_024260:exon10:c.C686A:p.T229N"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999913	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr6	4532747	12A2p6	cell line	sgMsh2	4532747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	269	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon39:c.A2371G:p.M791V	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	4.83E-08	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	4539480	12A2p6	cell line	sgMsh2	4539480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	107	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon51:c.A3747G:p.E1249E	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.829617702	1	0.09227872	AAG	synonymous	NA	NA	NA	NA
M7	chr6	4905506	12A2p6	cell line	sgMsh2	4905506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	78	9	3	0.333333333	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon2:c.G60A:p.R20R,Ppp1r9a:NM_181595:exon2:c.G60A:p.R20R"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	2	1	1	0.9976049	GGA	synonymous	NA	NA	NA	NA
M7	chr6	5156157	12A2p6	cell line	sgMsh2	5156157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	133	5	1	0.2	exonic	Ppp1r9a	nonsynonymous SNV	"Ppp1r9a:NM_001363809:exon13:c.A2797G:p.T933A,Ppp1r9a:NM_181595:exon13:c.A2797G:p.T933A"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.79315099	1	0.7343821	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	6113943	12A2p6	cell line	sgMsh2	6113943	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	85	26	9	0.346153846	exonic	Slc25a13	synonymous SNV	"Slc25a13:NM_001177572:exon9:c.A928C:p.R310R,Slc25a13:NM_015829:exon9:c.A928C:p.R310R"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9983886	CTC	synonymous	NA	NA	NA	NA
M7	chr6	6152512	12A2p6	cell line	sgMsh2	6152512	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	58	38	0	0	exonic	Slc25a13	frameshift deletion	"Slc25a13:NM_001177572:exon4:c.224delT:p.F75Sfs*4,Slc25a13:NM_015829:exon4:c.224delT:p.F75Sfs*4"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.98004289	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr6	6878375	12A2p6	cell line	sgMsh2	6878375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	47	0	0	NA	exonic	Dlx5	synonymous SNV	Dlx5:NM_010056:exon3:c.A654G:p.P218P	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	2	1	1	0.9862553	GTG	synonymous	NA	NA	NA	NA
M7	chr6	6878469	12A2p6	cell line	sgMsh2	6878469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	52	0	0	NA	exonic	Dlx5	nonsynonymous SNV	Dlx5:NM_010056:exon3:c.A560G:p.N187S	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.834176041	1	0.8815396	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	7863979	12A2p6	cell line	sgMsh2	7863979	T	-	Deletion	Strelka2;Vardict	2	0.1616	99	81	6	0.074074074	exonic	C1galt1	frameshift deletion	C1galt1:NM_052993:exon2:c.58delT:p.L22Yfs*5	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.736627586	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7	chr6	8013113	12A2p6	cell line	sgMsh2	8013113	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	90	0	0	NA	exonic	Col28a1	frameshift deletion	Col28a1:NM_001037865:exon33:c.2938delA:p.I980Ffs*58	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.683750854	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1597	119	30	0	0	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.727966742	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7	chr6	12555638	12A2p6	cell line	sgMsh2	12555638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	102	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon2:c.T246C:p.T82T	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9993851	TAG	synonymous	NA	NA	NA	NA
M7	chr6	13185194	12A2p6	cell line	sgMsh2	13185194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	184	0	0	NA	exonic	Vwde	nonsynonymous SNV	Vwde:NM_001368871:exon13:c.T2768C:p.I923T	6qA1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.989159568	1	0.9999894	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	17096152	12A2p6	cell line	sgMsh2	17096152	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	286	626	6	0.009584665	exonic	Tes	synonymous SNV	Tes:NM_207176:exon3:c.T138C:p.C46C	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.164100205	3	1	GTG	synonymous	NA	NA	NA	NA
M7	chr6	17097518	12A2p6	cell line	sgMsh2	17097518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	152	369	75	0.203252033	exonic	Tes	synonymous SNV	Tes:NM_207176:exon4:c.T624C:p.P208P	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.83873438	1	0.9517332	CTG	synonymous	NA	NA	NA	NA
M7	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	163	633	87	0.137440758	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999807	GTT	synonymous	NA	NA	NA	NA
M7	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	165	587	97	0.165247019	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.993717907	1	0.9999766	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	18226001	12A2p6	cell line	sgMsh2	18226001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	166	8	0	0	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon8:c.T947C:p.F316S	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999837	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	18267739	12A2p6	cell line	sgMsh2	18267739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	140	2	0	0	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon14:c.G1786A:p.A596T	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.975484551	1	0.9998034	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr6	18282507	12A2p6	cell line	sgMsh2	18282507	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	161	2	0	0	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon20:c.T3205A:p.F1069I	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.715659227	2	0.9424866	CTT	nonsynonymous	ACTT	8	ACTTACTT	NA
M7	chr6	18397578	12A2p6	cell line	sgMsh2	18397578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	165	1	0	0	exonic	Cttnbp2	synonymous SNV	Cttnbp2:NM_080285:exon13:c.C3342T:p.F1114F	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.610817429	2	0.9996717	GGA	synonymous	NA	NA	NA	NA
M7	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	222	1	0	0	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.939017839	1	0.9999628	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.751	197	244	191	0.782786885	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	4	1	1	0.9999972	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M7	chr6	22237622	12A2p6	cell line	sgMsh2	22237622	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	176	2	0	0	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon21:c.A2736T:p.E912D	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.897992788	1	0.998135	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	22254572	12A2p6	cell line	sgMsh2	22254572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	170	4	1	0.25	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon22:c.A2963G:p.H988R	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.957251195	1	0.9998886	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	23969343	12A2p6	cell line	sgMsh2	23969343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	220	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T718C:p.S240P	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	1	0.5094934	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	23970059	12A2p6	cell line	sgMsh2	23970059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	187	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T2C:p.M1T	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.939017839	1	0.9998557	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	24168044	12A2p6	cell line	sgMsh2	24168044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	91	0	0	NA	exonic	Slc13a1	synonymous SNV	Slc13a1:NM_019481:exon1:c.T21C:p.A7A	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.98004289	1	0.9980391	AAG	synonymous	NA	NA	NA	NA
M7	chr6	24450823	12A2p6	cell line	sgMsh2	24450823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	51	0	0	NA	exonic	Iqub	synonymous SNV	Iqub:NM_172535:exon11:c.T1776C:p.D592D	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.683750854	2	0.5668877	TAT	synonymous	NA	NA	NA	NA
M7	chr6	24503794	12A2p6	cell line	sgMsh2	24503794	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	203	0	0	NA	exonic	Iqub	nonsynonymous SNV	Iqub:NM_172535:exon3:c.T478G:p.L160V	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.223358612	3	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	27363247	12A2p6	cell line	sgMsh2	27363247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	165	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2268C:p.S756S,Grm8:NM_001361125:exon9:c.T2268C:p.S756S,Grm8:NM_008174:exon9:c.T2268C:p.S756S"	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999827	TAC	synonymous	NA	NA	NA	NA
M7	chr6	27363252	12A2p6	cell line	sgMsh2	27363252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	166	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.T2263C:p.Y755H,Grm8:NM_001361125:exon9:c.T2263C:p.Y755H,Grm8:NM_008174:exon9:c.T2263C:p.Y755H"	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999837	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	27363389	12A2p6	cell line	sgMsh2	27363389	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	171	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.G2126A:p.G709E,Grm8:NM_001361125:exon9:c.G2126A:p.G709E,Grm8:NM_008174:exon9:c.G2126A:p.G709E"	6qA3.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.870642753	1	0.9915645	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr6	27618514	12A2p6	cell line	sgMsh2	27618514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	78	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon6:c.T1328C:p.L443P,Grm8:NM_001361125:exon7:c.T1328C:p.L443P,Grm8:NM_008174:exon7:c.T1328C:p.L443P"	6qA3.2	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.624492446	2	0.9327162	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	28724971	12A2p6	cell line	sgMsh2	28724971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	210	217	29	0.133640553	exonic	Snd1	nonsynonymous SNV	Snd1:NM_019776:exon14:c.A1517G:p.D506G	6qA3.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.970926212	1	0.9999918	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	29450863	12A2p6	cell line	sgMsh2	29450863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	123	60	10	0.166666667	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon26:c.T4509C:p.T1503T,Flnc:NM_001311074:exon26:c.T4509C:p.T1503T"	6qA3.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.802267668	1	0.8010576	CTG	synonymous	NA	NA	NA	NA
M7	chr6	29565812	12A2p6	cell line	sgMsh2	29565812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	59	150	18	0.12	exonic	Tnpo3	synonymous SNV	"Tnpo3:NM_001347079:exon12:c.T1542C:p.P514P,Tnpo3:NM_177296:exon12:c.T1542C:p.P514P,Tnpo3:NM_001361290:exon13:c.T1344C:p.P448P"	6qA3.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	2	1	1	0.9929945	GAG	synonymous	NA	NA	NA	NA
M7	chr6	33305339	12A2p6	cell line	sgMsh2	33305339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	273	64	11	0.171875	exonic	Exoc4	synonymous SNV	"Exoc4:NM_001347089:exon5:c.T711C:p.P237P,Exoc4:NM_009148:exon5:c.T711C:p.P237P"	6qA3.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.65184248	2	0.9999835	CTA	synonymous	NA	NA	NA	NA
M7	chr6	34310017	12A2p6	cell line	sgMsh2	34310017	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	144	104	16	0.153846154	exonic	Akr1b3	synonymous SNV	Akr1b3:NM_009658:exon6:c.C603T:p.H201H	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	2	0.6854073	TGT	synonymous	NA	NA	NA	NA
M7	chr6	34357477	12A2p6	cell line	sgMsh2	34357477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	157	441	64	0.145124717	exonic	Akr1b8	nonsynonymous SNV	Akr1b8:NM_008012:exon3:c.T251C:p.F84S	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.811384346	1	0.8528351	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	35271698	12A2p6	cell line	sgMsh2	35271698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	85	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon14:c.C1513T:p.L505L	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.774917634	1	0.6838645	AGG	synonymous	NA	NA	NA	NA
M7	chr6	35313706	12A2p6	cell line	sgMsh2	35313706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	142	0	0	NA	exonic	Fam180a	nonsynonymous SNV	Fam180a:NM_173375:exon3:c.A341G:p.H114R	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.7475676	2	0.7184945	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	36524565	12A2p6	cell line	sgMsh2	36524565	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	116	0	0	NA	exonic	Chrm2	nonsynonymous SNV	Chrm2:NM_203491:exon3:c.G1356T:p.K452N	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.9830968	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr6	38591414	12A2p6	cell line	sgMsh2	38591414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	134	224	21	0.09375	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon5:c.A493G:p.K165E,Luc7l2:NM_001170849:exon5:c.A493G:p.K165E,Luc7l2:NM_138680:exon5:c.A493G:p.K165E,Luc7l2:NM_001311099:exon6:c.A334G:p.K112E,Luc7l2:NM_001311100:exon6:c.A334G:p.K112E,Luc7l2:NM_001331222:exon8:c.A490G:p.K164E,Luc7l2:NM_001331223:exon9:c.A334G:p.K112E"	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.715659227	2	0.8867576	AAA	nonsynonymous	AAAGA	10	AAAGAAAAGA	NA
M7	chr6	38636549	12A2p6	cell line	sgMsh2	38636549	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.166	25	6	2	0.333333333	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.T518C:p.L173P	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.756684278	1	0.7731737	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	38818458	12A2p6	cell line	sgMsh2	38818458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	203	42	10	0.238095238	exonic	Hipk2	nonsynonymous SNV	"Hipk2:NM_001136065:exon2:c.A854G:p.K285R,Hipk2:NM_001294143:exon2:c.A875G:p.K292R,Hipk2:NM_001294144:exon2:c.A875G:p.K292R,Hipk2:NM_010433:exon2:c.A875G:p.K292R"	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.729334244	2	0.9578854	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	38982203	12A2p6	cell line	sgMsh2	38982203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	278	0	0	NA	exonic	Tbxas1	nonsynonymous SNV	Tbxas1:NM_011539:exon4:c.T319C:p.F107L	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.774917634	2	0.7549331	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	39405918	12A2p6	cell line	sgMsh2	39405918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	231	123	25	0.203252033	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon3:c.T165C:p.A55A,Mkrn1:NM_018810:exon3:c.T357C:p.A119A"	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.861526075	1	0.9947946	TAG	synonymous	NA	NA	NA	NA
M7	chr6	39614154	12A2p6	cell line	sgMsh2	39614154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	102	18	2	0.111111111	exonic	Braf	synonymous SNV	Braf:NM_139294:exon21:c.A2370G:p.T790T	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.711100888	2	0.7892343	GTG	synonymous	NA	NA	NA	NA
M7	chr6	39639598	12A2p6	cell line	sgMsh2	39639598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	168	39	6	0.153846154	exonic	Braf	nonsynonymous SNV	Braf:NM_139294:exon16:c.G1797T:p.Q599H	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.619934107	2	0.9995666	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	40462034	12A2p6	cell line	sgMsh2	40462034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	146	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon8:c.T1090C:p.F364L	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999493	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	40612821	12A2p6	cell line	sgMsh2	40612821	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	117	0	0	NA	exonic	Tas2r138	frameshift deletion	Tas2r138:NM_001001451:exon1:c.490delT:p.C164Afs*12	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.961809534	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr6	40642996	12A2p6	cell line	sgMsh2	40642996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	157	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon2:c.T18C:p.F6F,Mgam:NM_001368875:exon2:c.T18C:p.F6F"	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.729334244	2	0.8861726	TTA	synonymous	NA	NA	NA	NA
M7	chr6	40655285	12A2p6	cell line	sgMsh2	40655285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	148	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon6:c.T552C:p.P184P,Mgam:NM_001368875:exon6:c.T552C:p.P184P"	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.811384346	1	0.8517519	CTT	synonymous	NA	NA	NA	NA
M7	chr6	40895432	12A2p6	cell line	sgMsh2	40895432	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	147	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon6:c.C656A:p.A219D	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.83873438	1	0.9496131	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr6	41374996	12A2p6	cell line	sgMsh2	41374996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	374	0	0	NA	exonic	Prss3	nonsynonymous SNV	Prss3:NM_011645:exon3:c.T332G:p.L111R	6qB1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.998276246	1	1.15E-09	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	41621271	12A2p6	cell line	sgMsh2	41621271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	143	0	0	NA	exonic	Trpv6	synonymous SNV	Trpv6:NM_022413:exon15:c.T2101C:p.L701L	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999399	AAG	synonymous	NA	NA	NA	NA
M7	chr6	41699217	12A2p6	cell line	sgMsh2	41699217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	166	0	0	NA	exonic	Kel	nonsynonymous SNV	Kel:NM_032540:exon7:c.C625T:p.P209S	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.925342822	1	0.9993639	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr6	42249455	12A2p6	cell line	sgMsh2	42249455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	221	90	15	0.166666667	exonic	Gstk1	nonsynonymous SNV	Gstk1:NM_029555:exon6:c.A497G:p.N166S	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.939017839	1	0.9999613	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	42357896	12A2p6	cell line	sgMsh2	42357896	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	145	200	22	0.11	exonic	Zyx	frameshift deletion	"Zyx:NM_001289618:exon9:c.1542delT:p.F515Sfs*96,Zyx:NM_001289619:exon9:c.1542delT:p.F515Sfs*39,Zyx:NM_001289617:exon10:c.1635delT:p.F546Sfs*109,Zyx:NM_011777:exon10:c.1635delT:p.F546Sfs*39"	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	156	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	2	0.7266196	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	42955913	12A2p6	cell line	sgMsh2	42955913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	409	0	0	NA	exonic	Olfr444	synonymous SNV	Olfr444:NM_146656:exon1:c.A414G:p.K138K	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.897992788	1	0.9999962	AAG	synonymous	NA	NA	NA	NA
M7	chr6	42956410	12A2p6	cell line	sgMsh2	42956410	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	227	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T911C:p.L304P	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.196008578	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	43167977	12A2p6	cell line	sgMsh2	43167977	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	80	0	0	NA	exonic	Olfr437	nonsynonymous SNV	Olfr437:NM_146296:exon1:c.G918T:p.K306N	6qB2.1	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.829617702	1	0.8923271	AGA	nonsynonymous	AGA	9	AGAAGAAGA	NA
M7	chr6	47821159	12A2p6	cell line	sgMsh2	47821159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	296	0	0	NA	exonic	Zfp786	nonsynonymous SNV	Zfp786:NM_177882:exon4:c.A844G:p.T282A	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	1.12E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	47821490	12A2p6	cell line	sgMsh2	47821490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	204	3	1	0.333333333	exonic	Zfp786	synonymous SNV	Zfp786:NM_177882:exon4:c.A513C:p.V171V	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.998276246	1	0.9999979	GTA	synonymous	NA	NA	NA	NA
M7	chr6	47890077	12A2p6	cell line	sgMsh2	47890077	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	94	38	4	0.105263158	exonic	Zfp282	synonymous SNV	Zfp282:NM_146175:exon3:c.C597T:p.T199T	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9990323	CCT	synonymous	NA	NA	NA	NA
M7	chr6	48490404	12A2p6	cell line	sgMsh2	48490404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	68	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon83:c.T12526C:p.S4176P	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.984601229	1	0.9942624	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	48495247	12A2p6	cell line	sgMsh2	48495247	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	98	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon94:c.C14374T:p.R4792C	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	1	0.7125961	TCG	nonsynonymous	NA	NA	NA	NA
M7	chr6	48568456	12A2p6	cell line	sgMsh2	48568456	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	116	4	0	0	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.T212C:p.L71P,Lrrc61:NM_177736:exon3:c.T212C:p.L71P"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.346433766	3	0.8739685	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	48659300	12A2p6	cell line	sgMsh2	48659300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	120	0	0	NA	exonic	Gimap8	synonymous SNV	"Gimap8:NM_212486:exon5:c.T1998C:p.D666D,Gimap8:NM_001077410:exon6:c.T1998C:p.D666D"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.802267668	1	0.8018881	ATG	synonymous	NA	NA	NA	NA
M7	chr6	48678048	12A2p6	cell line	sgMsh2	48678048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	121	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.A568G:p.M190V	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9997907	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	48708056	12A2p6	cell line	sgMsh2	48708056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	148	0	0	NA	exonic	Gimap6	nonsynonymous SNV	Gimap6:NM_153175:exon1:c.A95G:p.Y32C	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.861526075	1	0.9809757	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	48724226	12A2p6	cell line	sgMsh2	48724226	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	146	0	0	NA	exonic	Gimap7	frameshift deletion	Gimap7:NM_146167:exon2:c.745delA:p.I251Yfs*9	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.847851058	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7	chr6	48743156	12A2p6	cell line	sgMsh2	48743156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	88	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.A701G:p.D234G,Gimap1:NM_175860:exon3:c.A701G:p.D234G"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.797709329	1	0.7916985	GAC	nonsynonymous	C	5	CCCCC	NA
M7	chr6	48906651	12A2p6	cell line	sgMsh2	48906651	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	264	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon1:c.C1460T:p.T487I,Aoc1:NM_001161622:exon2:c.C1460T:p.T487I,Aoc1:NM_029638:exon2:c.C1460T:p.T487I"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.779475973	2	0.6528662	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr6	48907730	12A2p6	cell line	sgMsh2	48907730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	77	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon2:c.A1706G:p.Q569R,Aoc1:NM_001161622:exon3:c.A1706G:p.Q569R,Aoc1:NM_029638:exon3:c.A1706G:p.Q569R"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.770359295	1	0.6783976	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	48975491	12A2p6	cell line	sgMsh2	48975491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	94	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.A349G:p.T117A	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	2	1	1	0.9990323	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	48990592	12A2p6	cell line	sgMsh2	48990592	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	187	0	0	NA	exonic	Svs1	nonsynonymous SNV	Svs1:NM_172888:exon3:c.A2195G:p.E732G	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.999995	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	50216364	12A2p6	cell line	sgMsh2	50216364	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	297	26	3	0.115384615	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon9:c.T1252G:p.S418A	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.70198421	2	0.9995551	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	50216371	12A2p6	cell line	sgMsh2	50216371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	305	26	3	0.115384615	exonic	Gsdme	synonymous SNV	Gsdme:NM_018769:exon9:c.T1245C:p.V415V	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.715659227	2	0.9988128	TAA	synonymous	NA	NA	NA	NA
M7	chr6	50320078	12A2p6	cell line	sgMsh2	50320078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	94	162	27	0.166666667	exonic	Osbpl3	nonsynonymous SNV	"Osbpl3:NM_001163645:exon15:c.T1639A:p.C547S,Osbpl3:NM_027881:exon15:c.T1747A:p.C583S,Osbpl3:NM_001347213:exon17:c.T1840A:p.C614S"	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.446717224	2	0.9985174	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	50574046	12A2p6	cell line	sgMsh2	50574046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	344	8	0	0	exonic	4921507P07Rik	synonymous SNV	4921507P07Rik:NM_027564:exon10:c.T1422C:p.Y474Y	6qB2.3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	2	0.6997973	CAT	synonymous	NA	NA	NA	NA
M7	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Vardict	2	0.198	18	13	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.902551127	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr6	51458223	12A2p6	cell line	sgMsh2	51458223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	192	48	1	0.020833333	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.A1762G:p.T588A	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.929901161	1	0.9998005	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	52012366	12A2p6	cell line	sgMsh2	52012366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	81	69	15	0.217391304	exonic	Skap2	synonymous SNV	Skap2:NM_018773:exon1:c.T36C:p.P12P	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.83873438	1	0.9120918	GAG	synonymous	NA	NA	NA	NA
M7	chr6	53818171	12A2p6	cell line	sgMsh2	53818171	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	26	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.G2065T:p.G689C	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	1	1	0.9561406	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	53818348	12A2p6	cell line	sgMsh2	53818348	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	37	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A1888G:p.K630E	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.779475973	1	0.7846843	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	55102864	12A2p6	cell line	sgMsh2	55102864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	77	0	0	NA	exonic	Crhr2	nonsynonymous SNV	"Crhr2:NM_001288620:exon4:c.A115G:p.I39V,Crhr2:NM_001288619:exon5:c.A430G:p.I144V,Crhr2:NM_001288618:exon6:c.A490G:p.I164V,Crhr2:NM_009953:exon6:c.A487G:p.I163V"	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.752125939	1	0.582065	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr6	55872621	12A2p6	cell line	sgMsh2	55872621	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	143	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.A137C:p.N46T	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.670075836	2	0.9856808	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	55898057	12A2p6	cell line	sgMsh2	55898057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	206	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.T991G:p.C331G	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.784034312	1	0.5344005	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	56741496	12A2p6	cell line	sgMsh2	56741496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	223	66	6	0.090909091	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon11:c.T1346C:p.I449T	6qB3	chr6-3373003-56898101	5	4	1	0.9	4.102505121	NA	1	0.825059363	1	0.938305	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr6	57137842	12A2p6	cell line	sgMsh2	57137842	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	287	0	0	NA	exonic	Vmn1r11	nonsynonymous SNV	Vmn1r11:NM_053233:exon1:c.T490C:p.S164P	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	57159297	12A2p6	cell line	sgMsh2	57159297	A	-	Deletion	Strelka2;Vardict	2	0.1942	278	0	0	NA	exonic	Vmn1r12	frameshift deletion	Vmn1r12:NM_001101579:exon1:c.378delA:p.K128Nfs*2	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.885229438	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr6	57159416	12A2p6	cell line	sgMsh2	57159416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	307	0	0	NA	exonic	Vmn1r12	nonsynonymous SNV	Vmn1r12:NM_001101579:exon1:c.T497C:p.V166A	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9998009	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	57233566	12A2p6	cell line	sgMsh2	57233566	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	273	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A128C:p.K43T	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.70198421	2	0.9990553	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	57233999	12A2p6	cell line	sgMsh2	57233999	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.169	330	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A561G:p.I187M	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.770359295	2	0.8890366	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	57360638	12A2p6	cell line	sgMsh2	57360638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	299	0	0	NA	exonic	Vmn1r17	nonsynonymous SNV	Vmn1r17:NM_134171:exon1:c.A741G:p.I247M	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9999682	ATA	nonsynonymous	ATGAT	10	ATGATATGAT	NA
M7	chr6	57723627	12A2p6	cell line	sgMsh2	57723627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	196	25	3	0.12	exonic	Lancl2	synonymous SNV	Lancl2:NM_133737:exon4:c.T669C:p.A223A	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.945374	CTA	synonymous	NA	NA	NA	NA
M7	chr6	57955654	12A2p6	cell line	sgMsh2	57955654	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	237	0	0	NA	exonic	Vmn1r24	frameshift deletion	Vmn1r24:NM_134173:exon1:c.878delA:p.N293Tfs*4	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.743009261	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr6	57978758	12A2p6	cell line	sgMsh2	57978758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	367	0	0	NA	exonic	Vmn1r25	nonsynonymous SNV	Vmn1r25:NM_053238:exon1:c.T545C:p.F182S	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.7248001	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	58307429	12A2p6	cell line	sgMsh2	58307429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	387	0	0	NA	exonic	Vmn1r29	synonymous SNV	Vmn1r29:NM_053232:exon1:c.C133T:p.L45L	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8108049	ACT	synonymous	NA	NA	NA	NA
M7	chr6	58876505	12A2p6	cell line	sgMsh2	58876505	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	151	11	2	0.181818182	exonic	Herc3	nonsynonymous SNV	"Herc3:NM_001361967:exon14:c.G1650T:p.Q550H,Herc3:NM_028705:exon14:c.G1650T:p.Q550H,Herc3:NM_001361966:exon15:c.G1650T:p.Q550H"	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.7475676	2	0.7499303	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	58955281	12A2p6	cell line	sgMsh2	58955281	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	221	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon11:c.A1106T:p.K369M	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.7724881	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	60827553	12A2p6	cell line	sgMsh2	60827553	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	123	2	0	0	exonic	Snca	nonsynonymous SNV	"Snca:NM_001042451:exon2:c.G49A:p.A17T,Snca:NM_009221:exon2:c.G49A:p.A17T"	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9960802	GCC	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M7	chr6	60976637	12A2p6	cell line	sgMsh2	60976637	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	239	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.A1901C:p.Q634P,Mmrn1:NM_027613:exon6:c.A1901C:p.Q634P"	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	61311574	12A2p6	cell line	sgMsh2	61311574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	89	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon2:c.T720C:p.S240S,Ccser1:NM_183310:exon2:c.T720C:p.S240S"	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.588025734	2	0.9850253	GTT	synonymous	NA	NA	NA	NA
M7	chr6	61638471	12A2p6	cell line	sgMsh2	61638471	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	141	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon7:c.A1956T:p.S652S,Ccser1:NM_183310:exon7:c.A1956T:p.S652S"	6qB3	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9744763	CAC	synonymous	NA	NA	NA	NA
M7	chr6	64665882	12A2p6	cell line	sgMsh2	64665882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	95	0	0	NA	exonic	Grid2	nonsynonymous SNV	Grid2:NM_008167:exon16:c.A2627G:p.H876R	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9915994	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	65859463	12A2p6	cell line	sgMsh2	65859463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	45	23	4	0.173913043	exonic	Prdm5	nonsynonymous SNV	Prdm5:NM_027547:exon6:c.G757A:p.E253K	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.665517497	2	0.5722577	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr6	65870434	12A2p6	cell line	sgMsh2	65870434	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	149	38	5	0.131578947	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon5:c.T508G:p.F170V,Prdm5:NM_027547:exon9:c.T1060G:p.F354V"	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.875469	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	65953308	12A2p6	cell line	sgMsh2	65953308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	216	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A526G:p.R176G	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.51662	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	66539850	12A2p6	cell line	sgMsh2	66539851	TA	AG	DBS	Mutect2;Vardict	2	0.158	317	340	0	0	exonic	Mad2l1	nonframeshift substitution	"Mad2l1:NM_001355624:exon5:c.525_526AG:p.T176A,Mad2l1:NM_019499:exon5:c.525_526AG:p.T176A"	6qC1	chr6-56956255-70723407	4	2	2	0.9	4.102505121	NA	1	0.720217566	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	71284384	12A2p6	cell line	sgMsh2	71284384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	186	243	27	0.111111111	exonic	Krcc1	synonymous SNV	"Krcc1:NM_001354706:exon3:c.A399G:p.V133V,Krcc1:NM_145568:exon4:c.A399G:p.V133V"	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.624492446	2	0.9997955	TAG	synonymous	NA	NA	NA	NA
M7	chr6	71300395	12A2p6	cell line	sgMsh2	71300395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	73	0	0	NA	exonic	Gm1070	nonsynonymous SNV	Gm1070:NM_001357905:exon2:c.A271G:p.S91G	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.806826007	1	0.8289648	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	221	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.9981423	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	71496844	12A2p6	cell line	sgMsh2	71496844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	193	56	7	0.125	exonic	Rnf103	nonsynonymous SNV	Rnf103:NM_009543:exon2:c.A240C:p.E80D	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.9966441	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	71510177	12A2p6	cell line	sgMsh2	71510177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	279	68	15	0.220588235	exonic	Rnf103	synonymous SNV	"Rnf103:NM_001308303:exon4:c.T1269C:p.N423N,Rnf103:NM_009543:exon4:c.T1791C:p.N597N"	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	2.78E-08	ATA	synonymous	NA	NA	NA	NA
M7	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	207	108	27	0.25	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.852409397	1	0.9868228	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	134	259	43	0.166023166	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.834176041	1	0.9332759	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr6	73127877	12A2p6	cell line	sgMsh2	73127877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	160	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon35:c.A5728G:p.T1910A	6qC1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999771	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	77244542	12A2p6	cell line	sgMsh2	77244542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	89	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.C981A:p.S327S,Lrrtm1:NM_028880:exon2:c.C981A:p.S327S"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.743009261	2	0.5268439	CCT	synonymous	NA	NA	NA	NA
M7	chr6	77245123	12A2p6	cell line	sgMsh2	77245123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	109	0	0	NA	exonic	Lrrtm1	nonsynonymous SNV	"Lrrtm1:NM_001362109:exon2:c.A1562G:p.E521G,Lrrtm1:NM_028880:exon2:c.A1562G:p.E521G"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.797709329	1	0.7808029	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	77758562	12A2p6	cell line	sgMsh2	77758562	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	103	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon3:c.A132G:p.K44K,Ctnna2:NM_009819:exon3:c.A132G:p.K44K,Ctnna2:NM_001109764:exon4:c.A132G:p.K44K,Ctnna2:NM_145732:exon4:c.A132G:p.K44K"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.738450922	2	0.6262109	CTT	synonymous	NA	NA	NA	NA
M7	chr6	78376435	12A2p6	cell line	sgMsh2	78376435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	114	0	0	NA	exonic	Reg3d	nonsynonymous SNV	"Reg3d:NM_001161741:exon4:c.C286T:p.H96Y,Reg3d:NM_013893:exon5:c.C424T:p.H142Y"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	2	0.9814698	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr6	81964328	12A2p6	cell line	sgMsh2	81964328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	157	131	17	0.129770992	exonic	Mrpl19	nonsynonymous SNV	Mrpl19:NM_026490:exon2:c.G251A:p.R84K	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.829617702	1	0.9310871	CCT	nonsynonymous	C	5	CCCCC	NA
M7	chr6	83192825	12A2p6	cell line	sgMsh2	83192825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	81	164	32	0.195121951	exonic	Dctn1	nonsynonymous SNV	"Dctn1:NM_001347310:exon13:c.A1705G:p.I569V,Dctn1:NM_001198867:exon15:c.A1996G:p.I666V,Dctn1:NM_001198866:exon18:c.A2056G:p.I686V,Dctn1:NM_007835:exon18:c.A2107G:p.I703V"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	2	0.913361	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	106	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9995099	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	84099572	12A2p6	cell line	sgMsh2	84099572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	116	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon19:c.T1876C:p.Y626H,Dysf:NM_001077694:exon20:c.T1966C:p.Y656H,Dysf:NM_021469:exon20:c.T1969C:p.Y657H"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.907109466	1	0.9933162	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	84584351	12A2p6	cell line	sgMsh2	84584351	G	A	SNV	Mutect2;Vardict	2	0.062	68	0	0	NA	exonic	Cyp26b1	nonsynonymous SNV	"Cyp26b1:NM_001177713:exon3:c.C328T:p.H110Y,Cyp26b1:NM_175475:exon3:c.C328T:p.H110Y"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.282617019	3	0.989179	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr6	85484344	12A2p6	cell line	sgMsh2	85484344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	52	0	0	NA	exonic	Fbxo41	synonymous SNV	"Fbxo41:NM_001289674:exon2:c.G381A:p.L127L,Fbxo41:NM_001289675:exon2:c.G381A:p.L127L,Fbxo41:NM_001001160:exon3:c.G381A:p.L127L"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.692867532	2	0.5413469	GCA	synonymous	GCAGG	10	GCAGGGCAGG	NA
M7	chr6	85512025	12A2p6	cell line	sgMsh2	85512025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	21	0	0	NA	exonic	Egr4	nonsynonymous SNV	Egr4:NM_020596:exon2:c.A1052G:p.K351R	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	3	1	1	0.9425816	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	85628589	12A2p6	cell line	sgMsh2	85628589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	269	19	5	0.263157895	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon10:c.T5813C:p.V1938A	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.884317771	1	0.9995315	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	86118765	12A2p6	cell line	sgMsh2	86118765	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	137	97	18	0.18556701	exonic	Add2	nonsynonymous SNV	"Add2:NM_001271857:exon16:c.A2162C:p.E721A,Add2:NM_001271858:exon16:c.A2162C:p.E721A,Add2:NM_001271859:exon16:c.A2162C:p.E721A,Add2:NM_013458:exon16:c.A2162C:p.E721A"	6qC3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.957251195	1	0.9995229	GAG	nonsynonymous	AAG	15	AAGAAGAAGGAGAAG	NA
M7	chr6	86524911	12A2p6	cell line	sgMsh2	86524911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	115	835	117	0.14011976	exonic	Pcbp1	synonymous SNV	Pcbp1:NM_011865:exon1:c.T1005C:p.S335S	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.597142412	2	0.996199	TAC	synonymous	NA	NA	NA	NA
M7	chr6	87750644	12A2p6	cell line	sgMsh2	87750644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	43	0	0	NA	exonic	Efcc1	nonsynonymous SNV	Efcc1:NM_001159697:exon4:c.T1078C:p.S360P	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.9253553	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	87811390	12A2p6	cell line	sgMsh2	87811390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	28	11	2	0.181818182	exonic	Rab43	nonsynonymous SNV	Rab43:NM_001039394:exon1:c.A155G:p.D52G	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.96066	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	107	70	18	0.257142857	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.861526075	1	0.9642817	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	88515563	12A2p6	cell line	sgMsh2	88515563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	91	459	74	0.161220044	exonic	Sec61a1	nonsynonymous SNV	Sec61a1:NM_016906:exon3:c.T82C:p.F28L	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.752125939	1	0.5248091	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	30	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9647308	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	88888231	12A2p6	cell line	sgMsh2	88888231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	71	195	38	0.194871795	exonic	Mcm2	nonsynonymous SNV	Mcm2:NM_008564:exon9:c.A1463T:p.H488L	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.756684278	1	0.628634	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr6	90129869	12A2p6	cell line	sgMsh2	90129869	A	G	SNV	Mutect2;Vardict	2	0.015	432	0	0	NA	exonic	Vmn1r51	nonsynonymous SNV	Vmn1r51:NM_011683:exon3:c.A766G:p.T256A	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.068375085	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	90179065	12A2p6	cell line	sgMsh2	90179065	A	-	Deletion	Strelka2;Vardict	2	0.1443	388	0	0	NA	exonic	Vmn1r52	frameshift deletion	Vmn1r52:NM_053222:exon1:c.350delA:p.S118Afs*3	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.657768321	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr6	90689688	12A2p6	cell line	sgMsh2	90689688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	215	84	15	0.178571429	exonic	Iqsec1	nonsynonymous SNV	"Iqsec1:NM_001134383:exon3:c.G1496A:p.S499N,Iqsec1:NM_001134384:exon3:c.G1454A:p.S485N,Iqsec1:NM_001356440:exon3:c.G1454A:p.S485N"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.770359295	2	0.6890703	GCT	nonsynonymous	TGCT	8	TGCTTGCT	NA
M7	chr6	91172243	12A2p6	cell line	sgMsh2	91172243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	86	24	5	0.208333333	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon9:c.G728T:p.R243M	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.660959158	2	0.8943798	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	91233535	12A2p6	cell line	sgMsh2	91233535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	73	607	78	0.128500824	exonic	Fbln2	nonsynonymous SNV	"Fbln2:NM_001081437:exon2:c.T460A:p.S154T,Fbln2:NM_007992:exon2:c.T460A:p.S154T"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.647284141	2	0.8659535	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	91233556	12A2p6	cell line	sgMsh2	91233556	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	83	626	77	0.123003195	exonic	Fbln2	nonsynonymous SNV	"Fbln2:NM_001081437:exon2:c.T481A:p.C161S,Fbln2:NM_007992:exon2:c.T481A:p.C161S"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.592584073	2	0.9754903	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	91365853	12A2p6	cell line	sgMsh2	91365853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	126	15	0	0	exonic	Wnt7a	nonsynonymous SNV	Wnt7a:NM_009527:exon4:c.A1046C:p.K349T	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.638167463	2	0.9912203	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	91408767	12A2p6	cell line	sgMsh2	91408767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	115	26	1	0.038461538	exonic	Wnt7a	nonsynonymous SNV	"Wnt7a:NM_001363757:exon2:c.T203C:p.M68T,Wnt7a:NM_009527:exon2:c.T203C:p.M68T"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.939017839	1	0.9976645	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	92458604	12A2p6	cell line	sgMsh2	92458604	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	58	0	0	NA	exonic	Prickle2	nonsynonymous SNV	"Prickle2:NM_001134459:exon2:c.G15A:p.M5I,Prickle2:NM_001134460:exon2:c.G15A:p.M5I,Prickle2:NM_001134461:exon2:c.G15A:p.M5I,Prickle2:NM_001081146:exon3:c.G183A:p.M61I"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.674634175	2	9.55E-08	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr6	93678265	12A2p6	cell line	sgMsh2	93678265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	95	71	12	0.169014085	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon23:c.A3751G:p.T1251A,Magi1:NM_001286784:exon23:c.A4396G:p.T1466A,Magi1:NM_001029850:exon24:c.A4399G:p.T1467A"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	2	0.8824459	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	93678409	12A2p6	cell line	sgMsh2	93678409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	104	94	17	0.180851064	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon23:c.A3607G:p.R1203G,Magi1:NM_001286784:exon23:c.A4252G:p.R1418G,Magi1:NM_001029850:exon24:c.A4255G:p.R1419G"	6qD1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.724775905	2	0.7225527	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	94611480	12A2p6	cell line	sgMsh2	94611480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	104	79	16	0.202531646	exonic	Lrig1	nonsynonymous SNV	"Lrig1:NM_001355269:exon13:c.A1687G:p.I563V,Lrig1:NM_008377:exon13:c.A1687G:p.I563V"	6qD2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.866084414	1	0.9673449	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr6	97134382	12A2p6	cell line	sgMsh2	97134382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	153	16	1	0.0625	exonic	Eogt	nonsynonymous SNV	Eogt:NM_175313:exon8:c.T517C:p.F173L	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999659	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	97175886	12A2p6	cell line	sgMsh2	97175886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	181	121	28	0.231404959	exonic	Tmf1	nonsynonymous SNV	Tmf1:NM_001081111:exon2:c.T1225G:p.L409V	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.925342822	1	0.9996217	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	97176631	12A2p6	cell line	sgMsh2	97176631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	161	155	33	0.212903226	exonic	Tmf1	synonymous SNV	Tmf1:NM_001081111:exon2:c.T480A:p.T160T	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999784	AAG	synonymous	NA	NA	NA	NA
M7	chr6	97203492	12A2p6	cell line	sgMsh2	97203492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	114	333	68	0.204204204	exonic	Uba3	synonymous SNV	"Uba3:NM_001111106:exon2:c.T123C:p.D41D,Uba3:NM_001301857:exon3:c.T102C:p.D34D,Uba3:NM_001301858:exon3:c.T165C:p.D55D,Uba3:NM_001301859:exon3:c.T165C:p.D55D,Uba3:NM_011666:exon3:c.T165C:p.D55D"	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.619934107	2	0.9913196	AAT	synonymous	NA	NA	NA	NA
M7	chr6	98013757	12A2p6	cell line	sgMsh2	98013757	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	3	0	0	exonic	Mitf	nonsynonymous SNV	"Mitf:NM_008601:exon8:c.C799A:p.L267I,Mitf:NM_001113198:exon9:c.C1120A:p.L374I,Mitf:NM_001178049:exon9:c.C1072A:p.L358I"	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.993717907	1	0.9998784	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	400	62	12	0.193548387	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.688309193	2	0.9999965	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	102204002	12A2p6	cell line	sgMsh2	102204002	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	125	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon17:c.G2231A:p.G744E	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.9344595	1	0.998122	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr6	102273813	12A2p6	cell line	sgMsh2	102273813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	139	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon7:c.A773G:p.Q258R	6qD3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.9895457	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	103674999	12A2p6	cell line	sgMsh2	103674999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	183	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon9:c.A827C:p.K276T	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.966367873	1	0.9999616	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	103729287	12A2p6	cell line	sgMsh2	103729287	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	134	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon27:c.C3582A:p.S1194S	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.847851058	1	0.9600747	CCG	synonymous	NA	NA	NA	NA
M7	chr6	104774496	12A2p6	cell line	sgMsh2	104774496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	223	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon10:c.T1112C:p.L371P	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.993717907	1	0.999999	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	104863193	12A2p6	cell line	sgMsh2	104863193	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	170	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon23:c.T3053G:p.F1018C	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.154983527	3	1.00E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M7	chr6	108152244	12A2p6	cell line	sgMsh2	108152244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	70	53	11	0.20754717	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.T817C:p.F273L	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.797709329	1	0.8007158	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	108152315	12A2p6	cell line	sgMsh2	108152315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	62	14	0.225806452	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.A746G:p.Q249R	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9883813	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	92	12	4	0.333333333	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.998276246	1	0.9988642	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M7	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	83	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.578909056	2	0.9823549	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr6	110646260	12A2p6	cell line	sgMsh2	110646260	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	117	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon1:c.C393T:p.T131T,Grm7:NM_177328:exon1:c.C393T:p.T131T"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.583467395	2	0.997906	CCT	synonymous	NA	NA	NA	NA
M7	chr6	111358962	12A2p6	cell line	sgMsh2	111358962	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon8:c.G2333T:p.R778L,Grm7:NM_177328:exon8:c.G2333T:p.R778L"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.929901161	1	0.999028	CGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	113292427	12A2p6	cell line	sgMsh2	113292427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	182	0	0	NA	exonic	Cpne9	nonsynonymous SNV	Cpne9:NM_170673:exon11:c.T754C:p.F252L	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.738450922	2	0.8951302	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	113315368	12A2p6	cell line	sgMsh2	113315368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	100	29	6	0.206896552	exonic	Brpf1	synonymous SNV	"Brpf1:NM_001282126:exon3:c.A1374G:p.L458L,Brpf1:NM_001282127:exon3:c.A1374G:p.L458L,Brpf1:NM_001282128:exon3:c.A1374G:p.L458L,Brpf1:NM_030178:exon3:c.A1374G:p.L458L"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9993113	TAT	synonymous	NA	NA	NA	NA
M7	chr6	113333445	12A2p6	cell line	sgMsh2	113333445	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	102	60	12	0.2	exonic	Ogg1	nonsynonymous SNV	Ogg1:NM_010957:exon5:c.A851G:p.K284R	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.79315099	1	0.7603277	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	114302580	12A2p6	cell line	sgMsh2	114302580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	125	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.T319C:p.Y107H	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.852409397	1	0.9624149	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	114307727	12A2p6	cell line	sgMsh2	114307727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	103	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon8:c.A745G:p.I249V	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.999419	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	114314446	12A2p6	cell line	sgMsh2	114314446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	42	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon15:c.A1679C:p.K560T	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9818293	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	115820092	12A2p6	cell line	sgMsh2	115820092	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	40	1	0	0	exonic	Efcab12	nonsynonymous SNV	Efcab12:NM_001110506:exon4:c.A1100G:p.Q367R	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.984601229	1	0.9757315	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	115925759	12A2p6	cell line	sgMsh2	115925759	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.193	22	17	0	0	exonic	Ift122	nonsynonymous SNV	"Ift122:NM_001167763:exon28:c.A3301T:p.S1101C,Ift122:NM_031177:exon28:c.A3304T:p.S1102C"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.879759432	1	0.8882247	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	115967825	12A2p6	cell line	sgMsh2	115967825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	140	77	13	0.168831169	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon15:c.A3007G:p.I1003V	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.7475676	2	0.7111911	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr6	116043378	12A2p6	cell line	sgMsh2	116043378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	204	53	5	0.094339623	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon2:c.A32G:p.K11R,Tmcc1:NM_177412:exon4:c.A992G:p.K331R"	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.592584073	2	0.9999888	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	116414553	12A2p6	cell line	sgMsh2	116414553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	100	0	0	NA	exonic	Alox5	nonsynonymous SNV	Alox5:NM_009662:exon9:c.G1242T:p.Q414H	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.79315099	1	0.7619406	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	116427220	12A2p6	cell line	sgMsh2	116427220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	153	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon4:c.A477G:p.K159K	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.984601229	1	0.9999316	ATT	synonymous	NA	NA	NA	NA
M7	chr6	116557271	12A2p6	cell line	sgMsh2	116557271	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	214	0	0	NA	exonic	Olfr214	nonsynonymous SNV	Olfr214:NM_146759:exon1:c.C845A:p.A282D	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.113958476	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr6	116582189	12A2p6	cell line	sgMsh2	116582189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	247	0	0	NA	exonic	Olfr215	synonymous SNV	Olfr215:NM_146446:exon1:c.C756T:p.S252S	6qE3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.629050785	2	0.9999896	AGC	synonymous	NA	NA	NA	NA
M7	chr6	117176090	12A2p6	cell line	sgMsh2	117176090	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	32	0	0	NA	exonic	Cxcl12	nonsynonymous SNV	Cxcl12:NM_001012477:exon4:c.C271T:p.R91C	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.761242617	1	0.7618827	GCG	nonsynonymous	G	5	GGGGG	NA
M7	chr6	118153974	12A2p6	cell line	sgMsh2	118153974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	134	1	0	0	exonic	Ret	nonsynonymous SNV	Ret:NM_009050:exon20:c.T3227C:p.V1076A	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.784034312	1	0.6573013	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	118404595	12A2p6	cell line	sgMsh2	118404595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	150	83	16	0.192771084	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.T1981G:p.S661A	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.811384346	1	0.8519932	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	78	19	0	0	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
M7	chr6	118683460	12A2p6	cell line	sgMsh2	118683460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	83	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	Cacna1c:NM_001256001:exon18:c.C2416T:p.P806S	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.364667122	2	0.5364593	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.948134517	1	0.9989986	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M7	chr6	119242886	12A2p6	cell line	sgMsh2	119242886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	194	0	0	NA	exonic	Cacna2d4	nonsynonymous SNV	"Cacna2d4:NM_001033382:exon5:c.A532G:p.R178G,Cacna2d4:NM_001347427:exon5:c.A532G:p.R178G"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.729334244	2	0.9485622	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	119359042	12A2p6	cell line	sgMsh2	119359042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	93	374	76	0.203208556	exonic	Adipor2	nonsynonymous SNV	"Adipor2:NM_001355692:exon6:c.T718C:p.Y240H,Adipor2:NM_197985:exon6:c.T718C:p.Y240H"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.952692856	1	0.9962487	TAG	nonsynonymous	AGAA	8	AGAAAGAA	NA
M7	chr6	120207127	12A2p6	cell line	sgMsh2	120207127	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	82	2	1	0.5	exonic	B4galnt3	synonymous SNV	B4galnt3:NM_198884:exon18:c.T2721C:p.P907P	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.592584073	2	0.9739191	CAG	synonymous	NA	NA	NA	NA
M7	chr6	120208928	12A2p6	cell line	sgMsh2	120208928	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	101	1	0	0	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon17:c.A2549C:p.Q850P	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	2	0.9655679	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	120334800	12A2p6	cell line	sgMsh2	120334800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	148	70	16	0.228571429	exonic	Ccdc77	nonsynonymous SNV	"Ccdc77:NM_001381937:exon6:c.A634G:p.N212D,Ccdc77:NM_001381934:exon8:c.A790G:p.N264D,Ccdc77:NM_001381935:exon8:c.A736G:p.N246D,Ccdc77:NM_001381936:exon8:c.A736G:p.N246D,Ccdc77:NM_001381938:exon8:c.A133G:p.N45D,Ccdc77:NM_026028:exon8:c.A790G:p.N264D"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.70198421	2	0.9543239	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	120439127	12A2p6	cell line	sgMsh2	120439127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	124	155	33	0.212903226	exonic	Kdm5a	nonsynonymous SNV	Kdm5a:NM_145997:exon28:c.A5007T:p.Q1669H	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.647284141	2	0.9865028	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	120756781	12A2p6	cell line	sgMsh2	120756781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	103	0	0	NA	exonic	Cecr2	synonymous SNV	"Cecr2:NM_001128151:exon14:c.A1728G:p.S576S,Cecr2:NM_001368706:exon14:c.A1728G:p.S576S"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.469508919	2	0.9997379	CAT	synonymous	NA	NA	NA	NA
M7	chr6	120761502	12A2p6	cell line	sgMsh2	120761502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	170	0	0	NA	exonic	Cecr2	synonymous SNV	"Cecr2:NM_001128151:exon17:c.T3105C:p.S1035S,Cecr2:NM_001368706:exon17:c.T3189C:p.S1063S"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.83873438	1	0.9586845	GTG	synonymous	NA	NA	NA	NA
M7	chr6	120957707	12A2p6	cell line	sgMsh2	120957707	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	132	22	2	0.090909091	exonic	Mical3	stopgain	Mical3:NM_001270475:exon27:c.A5410T:p.K1804X	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.642725802	2	0.9922337	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	121253796	12A2p6	cell line	sgMsh2	121253796	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	292	0	0	NA	exonic	Usp18	stopgain	Usp18:NM_011909:exon3:c.T183A:p.C61X	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.715659227	2	0.9983068	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	121641338	12A2p6	cell line	sgMsh2	121641338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	158	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon6:c.T589C:p.S197P	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999743	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	122078750	12A2p6	cell line	sgMsh2	122078750	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	228	0	0	NA	exonic	Mug2	nonsynonymous SNV	Mug2:NM_008646:exon27:c.T3391G:p.F1131V	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.852409397	1	0.9899575	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	122279655	12A2p6	cell line	sgMsh2	122279655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	172	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon2:c.A171G:p.Q57Q	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.5606757	2	0.999983	GTT	synonymous	NA	NA	NA	NA
M7	chr6	122282776	12A2p6	cell line	sgMsh2	122282776	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	110	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon1:c.G36A:p.L12L	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9996093	GCA	synonymous	NA	NA	NA	NA
M7	chr6	122313281	12A2p6	cell line	sgMsh2	122313281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	236	39	0.165254237	exonic	M6pr	nonsynonymous SNV	M6pr:NM_010749:exon3:c.G202T:p.G68C	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.88887611	1	0.9971453	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	122321956	12A2p6	cell line	sgMsh2	122321956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	71	59	12	0.203389831	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon9:c.A2031C:p.K677N,Phc1:NM_001271579:exon10:c.A2187C:p.K729N,Phc1:NM_007905:exon10:c.A2187C:p.K729N,Phc1:NM_001355215:exon11:c.A2235C:p.K745N"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.884317771	1	0.9610609	GTT	nonsynonymous	G	5	GGGGG	NA
M7	chr6	122322387	12A2p6	cell line	sgMsh2	122322387	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	203	50	15	0.3	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon8:c.C1841A:p.P614H,Phc1:NM_001271579:exon9:c.C1997A:p.P666H,Phc1:NM_007905:exon9:c.C1997A:p.P666H,Phc1:NM_001355215:exon10:c.C2045A:p.P682H"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.88887611	1	0.9984262	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	122456512	12A2p6	cell line	sgMsh2	122456512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	153	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon6:c.T849C:p.G283G	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.957251195	1	0.9997643	AAC	synonymous	NA	NA	NA	NA
M7	chr6	122580767	12A2p6	cell line	sgMsh2	122580767	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	180	0	0	NA	exonic	Apobec1	frameshift deletion	"Apobec1:NM_001134391:exon7:c.482delC:p.P161Lfs*14,Apobec1:NM_031159:exon7:c.482delC:p.P161Lfs*14"	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7	chr6	122736594	12A2p6	cell line	sgMsh2	122736594	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	99	0	0	NA	exonic	Slc2a3	nonsynonymous SNV	Slc2a3:NM_011401:exon5:c.G658A:p.D220N	6qF1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.706542549	2	0.7970027	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	122850369	12A2p6	cell line	sgMsh2	122850369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	226	7	0	0	exonic	C3ar1	frameshift deletion	C3ar1:NM_009779:exon2:c.888delT:p.T297Lfs*29	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.779475973	NA	NA	TAG	frameshift	NA	NA	NA	-1
M7	chr6	122850373	12A2p6	cell line	sgMsh2	122850373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	230	8	1	0.125	exonic	C3ar1	nonsynonymous SNV	C3ar1:NM_009779:exon2:c.T884C:p.F295S	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.784034312	2	0.5083335	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr6	123235521	12A2p6	cell line	sgMsh2	123235521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	88	0	0	NA	exonic	Clec4n	nonsynonymous SNV	"Clec4n:NM_001190320:exon3:c.T205G:p.F69V,Clec4n:NM_001190321:exon3:c.T193G:p.F65V,Clec4n:NM_020001:exon4:c.T295G:p.F99V"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.715659227	2	0.6899576	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	123637661	12A2p6	cell line	sgMsh2	123637661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	245	0	0	NA	exonic	Vmn2r22	synonymous SNV	Vmn2r22:NM_001104637:exon3:c.A969G:p.G323G	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.765800956	2	0.8117281	CTC	synonymous	NA	NA	NA	NA
M7	chr6	123712979	12A2p6	cell line	sgMsh2	123712979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	398	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.A813G:p.T271T	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.70198421	2	0.9999813	CAC	synonymous	NA	NA	NA	NA
M7	chr6	123822895	12A2p6	cell line	sgMsh2	123822895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	333	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon6:c.A2487G:p.L829L	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.829617702	1	0.9763558	GTA	synonymous	NA	NA	NA	NA
M7	chr6	123839314	12A2p6	cell line	sgMsh2	123839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	194	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon3:c.A1307G:p.Q436R	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.834176041	1	0.9568875	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	124039164	12A2p6	cell line	sgMsh2	124039164	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	345	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon3:c.A586C:p.M196L	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.843292719	1	0.9944698	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	124050697	12A2p6	cell line	sgMsh2	124050697	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	370	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon4:c.A1395C:p.E465D	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.14130851	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	124325514	12A2p6	cell line	sgMsh2	124325514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	107	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon12:c.A3036G:p.K1012K,Cd163:NM_053094:exon12:c.A3036G:p.K1012K"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.911667805	1	0.9924769	AAC	synonymous	NA	NA	NA	NA
M7	chr6	124519754	12A2p6	cell line	sgMsh2	124519754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	251	0	0	NA	exonic	C1ra	nonsynonymous SNV	C1ra:NM_023143:exon9:c.A1148G:p.N383S	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.815942685	1	0.8989132	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	124702305	12A2p6	cell line	sgMsh2	124702305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	223	175	17	0.097142857	exonic	Lpcat3	nonsynonymous SNV	Lpcat3:NM_145130:exon8:c.A856G:p.T286A	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	2	0.9989901	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	124728798	12A2p6	cell line	sgMsh2	124728798	T	C	SNV	Mutect2;Vardict	2	0.062	67	26	4	0.153846154	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A505G:p.I169V,Ptpn6:NM_013545:exon4:c.A499G:p.I167V"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.282617019	3	0.9883053	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr6	124763128	12A2p6	cell line	sgMsh2	124763128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	134	7	0	0	exonic	Eno2	nonsynonymous SNV	"Eno2:NM_001302642:exon7:c.T587C:p.I196T,Eno2:NM_001355220:exon9:c.T944C:p.I315T,Eno2:NM_013509:exon9:c.T944C:p.I315T"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.802267668	1	0.7979901	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	124831481	12A2p6	cell line	sgMsh2	124831481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	142	113	15	0.132743363	exonic	Cdca3	synonymous SNV	Cdca3:NM_013538:exon3:c.T240C:p.S80S	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.583467395	2	0.9996016	GTG	synonymous	NA	NA	NA	NA
M7	chr6	124837668	12A2p6	cell line	sgMsh2	124837668	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	211	0	0	NA	exonic	Gnb3	nonsynonymous SNV	Gnb3:NM_013530:exon5:c.A266T:p.K89M	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.683750854	2	0.9978815	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	124961161	12A2p6	cell line	sgMsh2	124961161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	47	145	37	0.255172414	exonic	Cops7a	nonsynonymous SNV	"Cops7a:NM_001164089:exon5:c.A527C:p.E176A,Cops7a:NM_001355541:exon5:c.A527C:p.E176A,Cops7a:NM_001355542:exon5:c.A527C:p.E176A,Cops7a:NM_001379119:exon5:c.A527C:p.E176A,Cops7a:NM_001379120:exon5:c.A527C:p.E176A,Cops7a:NM_001379122:exon5:c.A527C:p.E176A,Cops7a:NM_001379123:exon5:c.A527C:p.E176A,Cops7a:NM_001379124:exon5:c.A527C:p.E176A,Cops7a:NM_001379125:exon5:c.A527C:p.E176A,Cops7a:NM_012003:exon5:c.A527C:p.E176A"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9862553	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	125024219	12A2p6	cell line	sgMsh2	125024219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	100	73	12	0.164383562	exonic	Zfp384	nonsynonymous SNV	"Zfp384:NM_001347452:exon3:c.A253G:p.T85A,Zfp384:NM_001252083:exon4:c.A253G:p.T85A,Zfp384:NM_001372420:exon4:c.A253G:p.T85A,Zfp384:NM_001372422:exon4:c.A253G:p.T85A,Zfp384:NM_001372424:exon4:c.A253G:p.T85A,Zfp384:NM_175557:exon4:c.A253G:p.T85A"	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.7475676	2	0.5460139	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	125165300	12A2p6	cell line	sgMsh2	125165300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	203	67	12	0.179104478	exonic	Gapdh	synonymous SNV	Gapdh:NM_001289726:exon2:c.A72T:p.V24V	6qF2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.916226144	1	0.9996949	CTA	synonymous	NA	NA	NA	NA
M7	chr6	125357850	12A2p6	cell line	sgMsh2	125357850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	105	163	21	0.128834356	exonic	Tnfrsf1a	nonsynonymous SNV	Tnfrsf1a:NM_011609:exon4:c.A452G:p.N151S	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.815942685	1	0.8639898	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	125603430	12A2p6	cell line	sgMsh2	125603430	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	51	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon14:c.T1640C:p.V547A	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9890151	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	125656649	12A2p6	cell line	sgMsh2	125656649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	210	2	0	0	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon36:c.T6097C:p.Y2033H	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9999987	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	125657035	12A2p6	cell line	sgMsh2	125657035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	142	2	2	1	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon37:c.T6292C:p.L2098L	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.524208988	2	0.9999669	GTT	synonymous	NA	NA	NA	NA
M7	chr6	125667493	12A2p6	cell line	sgMsh2	125667493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	134	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon43:c.T7310C:p.V2437A	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.957251195	1	0.9994554	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	126101934	12A2p6	cell line	sgMsh2	126101934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	157	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A608G:p.Y203C,Ntf3:NM_008742:exon2:c.A569G:p.Y190C,Ntf3:NM_001164034:exon3:c.A608G:p.Y203C"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.770359295	2	0.5368351	ATA	nonsynonymous	A	5	AAAAA	NA
M7	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	112	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.670075836	2	0.9510147	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	126534980	12A2p6	cell line	sgMsh2	126534980	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	19	0	0	NA	exonic	Kcna5	stopgain	Kcna5:NM_145983:exon1:c.C184T:p.Q62X	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9361228	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	126866824	12A2p6	cell line	sgMsh2	126866824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	110	0	0	NA	exonic	Akap3	nonsynonymous SNV	Akap3:NM_009650:exon5:c.A2405G:p.Y802C	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9996093	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	126928223	12A2p6	cell line	sgMsh2	126928223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	225	51	9	0.176470588	exonic	Rad51ap1	synonymous SNV	"Rad51ap1:NM_001347455:exon5:c.T324C:p.T108T,Rad51ap1:NM_009013:exon5:c.T324C:p.T108T"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.706542549	2	0.9942541	CAG	synonymous	NA	NA	NA	NA
M7	chr6	127146068	12A2p6	cell line	sgMsh2	127146068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	96	705	144	0.204255319	exonic	Ccnd2	nonsynonymous SNV	Ccnd2:NM_009829:exon3:c.C523A:p.L175M	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.993717907	1	0.9989675	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr6	128487428	12A2p6	cell line	sgMsh2	128487428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	177	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon31:c.A4135G:p.T1379A	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.629050785	2	0.9995768	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	128488934	12A2p6	cell line	sgMsh2	128488934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	113	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon29:c.A3782G:p.N1261S	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.733892583	2	0.7056645	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	128499002	12A2p6	cell line	sgMsh2	128499002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	106	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon17:c.A2058T:p.P686P	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.592584073	2	0.994234	GTG	synonymous	NA	NA	NA	NA
M7	chr6	128581002	12A2p6	cell line	sgMsh2	128581002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	217	0	0	NA	exonic	A2ml1	nonsynonymous SNV	A2ml1:NM_001001179:exon2:c.A190G:p.T64A	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.870642753	1	0.9963772	GTA	nonsynonymous	TAG	8	TAGTAGTA	NA
M7	chr6	129401861	12A2p6	cell line	sgMsh2	129401861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	138	0	0	NA	exonic	Clec1b	nonsynonymous SNV	"Clec1b:NM_001204239:exon3:c.A310G:p.T104A,Clec1b:NM_019985:exon4:c.A406G:p.T136A"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.83873438	1	0.945573	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	130119065	12A2p6	cell line	sgMsh2	130119065	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	319	0	0	NA	exonic	Klra21;Klra8	nonsynonymous SNV	"Klra8:NM_001101620:exon6:c.A563G:p.K188R,Klra8:NM_010650:exon6:c.A554G:p.K185R,Klra21:NM_053151:exon6:c.A551G:p.K184R"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.109400137	3	1	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr6	130281851	12A2p6	cell line	sgMsh2	130281851	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	537	0	0	NA	exonic	Klra10	synonymous SNV	Klra10:NM_008459:exon1:c.G72A:p.R24R	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.369225461	3	0.8111915	GCC	synonymous	NA	NA	NA	NA
M7	chr6	130327147	12A2p6	cell line	sgMsh2	130327147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	370	0	0	NA	exonic	Klra3	nonsynonymous SNV	"Klra3:NM_001289604:exon6:c.T581C:p.V194A,Klra3:NM_001289605:exon6:c.T581C:p.V194A,Klra3:NM_010648:exon6:c.T581C:p.V194A"	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.788592651	2	0.6301872	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	131684865	12A2p6	cell line	sgMsh2	131684865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	106	0	0	NA	exonic	Tas2r104	synonymous SNV	Tas2r104:NM_207011:exon1:c.C880T:p.L294L	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.706542549	2	0.8289196	AGT	synonymous	NA	NA	NA	NA
M7	chr6	131686688	12A2p6	cell line	sgMsh2	131686688	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	74	0	0	NA	exonic	Tas2r105	nonsynonymous SNV	Tas2r105:NM_020501:exon1:c.T776C:p.L259P	6qF3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.414808851	2	0.966888	CAG	nonsynonymous	GTTT	8	GTTTGTTT	NA
M7	chr6	132711246	12A2p6	cell line	sgMsh2	132711246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	177	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.A683G:p.H228R	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.861526075	1	0.9878781	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	198	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	1	0.9999973	GTG	synonymous	NA	NA	NA	NA
M7	chr6	132910140	12A2p6	cell line	sgMsh2	132910140	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	245	0	0	NA	exonic	Tas2r125	nonsynonymous SNV	Tas2r125:NM_207027:exon1:c.C490T:p.L164F	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.843292719	1	0.9845235	CCT	nonsynonymous	CTTT	8	CTTTCTTT	NA
M7	chr6	133036200	12A2p6	cell line	sgMsh2	133036200	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	0	0	NA	exonic	Tas2r103	nonsynonymous SNV	Tas2r103:NM_053211:exon1:c.G902T:p.R301M	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.902551127	1	0.9875125	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	134248493	12A2p6	cell line	sgMsh2	134248493	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	52	28	5	0.178571429	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A686G:p.N229S,Etv6:NM_001303102:exon6:c.A557G:p.N186S"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.861526075	1	0.9189112	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	189	96	22	0.229166667	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.65184248	2	0.9991991	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr6	134507677	12A2p6	cell line	sgMsh2	134507677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	84	122	19	0.155737705	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon6:c.A982G:p.T328A	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.770359295	1	0.6610978	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	134718109	12A2p6	cell line	sgMsh2	134718109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	104	20	2	0.1	exonic	Dusp16	synonymous SNV	Dusp16:NM_130447:exon7:c.T1758C:p.S586S	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.820501024	1	0.8793948	CAC	synonymous	NA	NA	NA	NA
M7	chr6	135106215	12A2p6	cell line	sgMsh2	135106215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	166	0	0	NA	exonic	Gprc5d	synonymous SNV	Gprc5d:NM_001205396:exon4:c.A1014C:p.P338P	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.633609124	2	0.9990526	GTG	synonymous	NA	NA	NA	NA
M7	chr6	135106258	12A2p6	cell line	sgMsh2	135106258	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	145	0	0	NA	exonic	Gprc5d	stoploss	Gprc5d:NM_053118:exon3:c.A903C:p.X301C	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.870642753	1	0.986432	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr6	135116037	12A2p6	cell line	sgMsh2	135116037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	96	0	0	NA	exonic	Gprc5d	nonsynonymous SNV	"Gprc5d:NM_001205396:exon2:c.A871G:p.M291V,Gprc5d:NM_053118:exon2:c.A871G:p.M291V"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.679192515	2	0.8863444	ATC	nonsynonymous	ATCC	8	ATCCATCC	NA
M7	chr6	136044278	12A2p6	cell line	sgMsh2	136044278	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	84	0	0	NA	exonic	Grin2b	stopgain	"Grin2b:NM_001363750:exon4:c.T24A:p.C8X,Grin2b:NM_008171:exon4:c.T24A:p.C8X"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9982947	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	136651815	12A2p6	cell line	sgMsh2	136651815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	76	0	0	NA	exonic	Plbd1	nonsynonymous SNV	Plbd1:NM_025806:exon2:c.T254C:p.I85T	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9973179	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr6	136908049	12A2p6	cell line	sgMsh2	136908049	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.127	69	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon6:c.G750T:p.E250D	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.578909056	2	0.9556559	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr6	137056311	12A2p6	cell line	sgMsh2	137056311	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	139	0	0	NA	exonic	Rerg	nonsynonymous SNV	"Rerg:NM_001164214:exon4:c.C365T:p.A122V,Rerg:NM_001164212:exon5:c.C422T:p.A141V,Rerg:NM_181988:exon5:c.C422T:p.A141V"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.897992788	1	0.9950316	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr6	137382718	12A2p6	cell line	sgMsh2	137382718	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	55	0	0	NA	exonic	Ptpro	nonsynonymous SNV	"Ptpro:NM_001164401:exon6:c.A1285G:p.S429G,Ptpro:NM_011216:exon6:c.A1285G:p.S429G"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.469508919	2	0.9754899	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	138377245	12A2p6	cell line	sgMsh2	138377245	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	126	0	0	NA	exonic	Lmo3	nonsynonymous SNV	"Lmo3:NM_001356305:exon3:c.A287C:p.N96T,Lmo3:NM_001356306:exon3:c.A287C:p.N96T,Lmo3:NM_001356307:exon3:c.A320C:p.N107T,Lmo3:NM_207222:exon4:c.A287C:p.N96T"	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.784034312	1	0.670035	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr6	138657515	12A2p6	cell line	sgMsh2	138657515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	144	0	0	NA	exonic	Igbp1b	synonymous SNV	Igbp1b:NM_015777:exon1:c.A930G:p.Q310Q	6qG1	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.79315099	1	0.7247562	TTT	synonymous	NA	NA	NA	NA
M7	chr6	139967917	12A2p6	cell line	sgMsh2	139967917	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	122	0	0	NA	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon16:c.T1936C:p.Y646H	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.200566917	3	3.05E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr6	140042074	12A2p6	cell line	sgMsh2	140042074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	183	0	0	NA	exonic	Capza3	nonsynonymous SNV	Capza3:NM_007605:exon1:c.A398G:p.Y133C	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.852409397	1	0.9820474	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	140643981	12A2p6	cell line	sgMsh2	140643981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	264	150	31	0.206666667	exonic	Aebp2	nonsynonymous SNV	"Aebp2:NM_001005605:exon5:c.T1187C:p.L396P,Aebp2:NM_001309436:exon5:c.T521C:p.L174P,Aebp2:NM_001309437:exon5:c.T521C:p.L174P,Aebp2:NM_009637:exon5:c.T1187C:p.L396P,Aebp2:NM_178803:exon5:c.T521C:p.L174P"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	141250383	12A2p6	cell line	sgMsh2	141250383	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	24	0	0	NA	exonic	Pde3a	nonsynonymous SNV	Pde3a:NM_018779:exon1:c.C794A:p.P265H	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.948134517	1	0.9308851	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr6	141481133	12A2p6	cell line	sgMsh2	141481133	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	112	0	0	NA	exonic	Pde3a	synonymous SNV	Pde3a:NM_018779:exon9:c.T2019A:p.A673A	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.743009261	2	0.6342574	CTC	synonymous	NA	NA	NA	NA
M7	chr6	141812743	12A2p6	cell line	sgMsh2	141812743	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	165	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon13:c.1541delT:p.L514fs*0,Slco1a4:NM_030687:exon14:c.1541delT:p.L514fs*0"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.989159568	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M7	chr6	141908929	12A2p6	cell line	sgMsh2	141908929	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	195	0	0	NA	exonic	Slco1a1	synonymous SNV	Slco1a1:NM_013797:exon14:c.A1995G:p.E665E	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.852409397	1	0.9846164	GTT	synonymous	NA	NA	NA	NA
M7	chr6	141918548	12A2p6	cell line	sgMsh2	141918548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	126	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon11:c.A1525G:p.K509E	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.9344595	1	0.9981907	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	141936429	12A2p6	cell line	sgMsh2	141936429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	552	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon4:c.A413G:p.Q138R	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.756684278	2	0.9988808	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr6	141972220	12A2p6	cell line	sgMsh2	141972220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	85	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon14:c.T1929C:p.D643D	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.998276246	1	0.9983174	CAT	synonymous	NA	NA	NA	NA
M7	chr6	142003500	12A2p6	cell line	sgMsh2	142003500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	148	0	0	NA	exonic	Gm6614	nonsynonymous SNV	Gm6614:NM_001081318:exon2:c.T149C:p.L50P	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.929901161	1	0.999028	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	142089812	12A2p6	cell line	sgMsh2	142089812	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	138	0	0	NA	exonic	Slco1a6	nonsynonymous SNV	"Slco1a6:NM_001381930:exon13:c.T1785G:p.S595R,Slco1a6:NM_023718:exon14:c.T1785G:p.S595R"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.670075836	2	0.9824945	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	142103105	12A2p6	cell line	sgMsh2	142103105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	209	0	0	NA	exonic	Slco1a6	synonymous SNV	"Slco1a6:NM_001381930:exon8:c.T948C:p.P316P,Slco1a6:NM_023718:exon9:c.T948C:p.P316P"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.724775905	2	0.9719657	TAG	synonymous	NA	NA	NA	NA
M7	chr6	142367356	12A2p6	cell line	sgMsh2	142367356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	224	20	5	0.25	exonic	Recql	synonymous SNV	"Recql:NM_001204906:exon10:c.T1134C:p.I378I,Recql:NM_001204907:exon10:c.T1134C:p.I378I,Recql:NM_001355511:exon10:c.T1134C:p.I378I,Recql:NM_023042:exon10:c.T1134C:p.I378I"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	1	1	0.9999994	CAA	synonymous	NA	NA	NA	NA
M7	chr6	142376829	12A2p6	cell line	sgMsh2	142376829	C	A	SNV	Mutect2;Vardict	2	0.059	74	22	0	0	exonic	Recql	stopgain	"Recql:NM_001204906:exon4:c.G346T:p.G116X,Recql:NM_001204907:exon4:c.G346T:p.G116X,Recql:NM_001355511:exon4:c.G346T:p.G116X,Recql:NM_023042:exon4:c.G346T:p.G116X"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.268942002	3	0.9971405	CCT	nonsynonymous	CCT	9	CCTCCTCCT	NA
M7	chr6	142645892	12A2p6	cell line	sgMsh2	142645892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	244	0	0	NA	exonic	Abcc9	synonymous SNV	"Abcc9:NM_001044720:exon20:c.A2370G:p.G790G,Abcc9:NM_001310143:exon20:c.A2370G:p.G790G,Abcc9:NM_021042:exon20:c.A2304G:p.G768G,Abcc9:NM_011511:exon21:c.A2409G:p.G803G,Abcc9:NM_021041:exon21:c.A2409G:p.G803G"	6qG2	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.815942685	1	0.8974383	CTC	synonymous	NA	NA	NA	NA
M7	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.437	193	24	2	0.083333333	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M7	chr6	146180313	12A2p6	cell line	sgMsh2	146180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	205	16	7	0.4375	exonic	Itpr2	nonsynonymous SNV	"Itpr2:NM_010586:exon48:c.T6713C:p.V2238A,Itpr2:NM_019923:exon49:c.T6812C:p.V2271A"	6qG3	chr6-70723408-148425959	5	4	1	0.9	4.102505121	NA	1	0.724775905	2	0.9691497	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	225	11	0	0	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7	chr6	149044772	12A2p6	cell line	sgMsh2	149044772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	120	24	5	0.208333333	exonic	Dennd5b	nonsynonymous SNV	Dennd5b:NM_177192:exon5:c.T1340C:p.L447P	6qG3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	174	87	13	0.149425287	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	3653236	12A2p6	cell line	sgMsh2	3653236	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	116	92	4	0.043478261	exonic	Cnot3	stopgain	Cnot3:NM_146176:exon8:c.G520T:p.E174X	7qA1	chr7-3489139-3716106	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9921938	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	3653248	12A2p6	cell line	sgMsh2	3653248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	124	93	30	0.322580645	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.T532C:p.Y178H	7qA1	chr7-3489139-3716106	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.6354022	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	3692095	12A2p6	cell line	sgMsh2	3692095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	105	90	20	0.222222222	exonic	Mboat7	synonymous SNV	Mboat7:NM_029934:exon2:c.A21G:p.T7T	7qA1	chr7-3489139-3716106	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8639898	ATG	synonymous	NA	NA	NA	NA
M7	chr7	4238628	12A2p6	cell line	sgMsh2	4238628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	84	0	0	NA	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon4:c.T425C:p.L142P	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	4836502	12A2p6	cell line	sgMsh2	4836502	T	A	SNV	Mutect2;MuSe;Vardict	3	0.307	13	0	0	NA	exonic	Shisa7	synonymous SNV	"Shisa7:NM_001290291:exon2:c.A222T:p.A74A,Shisa7:NM_172737:exon2:c.A222T:p.A74A"	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	1	0.9124567	CTG	synonymous	NA	NA	NA	NA
M7	chr7	4891577	12A2p6	cell line	sgMsh2	4891577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	108	73	19	0.260273973	exonic	Isoc2a	synonymous SNV	Isoc2a:NM_001101598:exon3:c.T258C:p.S86S	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9927021	GTA	synonymous	NA	NA	NA	NA
M7	chr7	5008518	12A2p6	cell line	sgMsh2	5008518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	30	41	8	0.195121951	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A1000G:p.T334A,Fiz1:NM_001110329:exon3:c.A1000G:p.T334A,Fiz1:NM_001110330:exon3:c.A1000G:p.T334A,Fiz1:NM_001360241:exon3:c.A1000G:p.T334A,Fiz1:NM_001360242:exon3:c.A1000G:p.T334A,Fiz1:NM_001360243:exon3:c.A1000G:p.T334A,Fiz1:NM_011813:exon3:c.A1000G:p.T334A"	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	1	0.9647308	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	5008766	12A2p6	cell line	sgMsh2	5008766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	50	19	2	0.105263158	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A752G:p.K251R,Fiz1:NM_001110329:exon3:c.A752G:p.K251R,Fiz1:NM_001110330:exon3:c.A752G:p.K251R,Fiz1:NM_001360241:exon3:c.A752G:p.K251R,Fiz1:NM_001360242:exon3:c.A752G:p.K251R,Fiz1:NM_001360243:exon3:c.A752G:p.K251R,Fiz1:NM_011813:exon3:c.A752G:p.K251R"	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.975316	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	5031599	12A2p6	cell line	sgMsh2	5031599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	25	8	0	0	exonic	Zfp865	nonsynonymous SNV	Zfp865:NM_001033383:exon2:c.T2582C:p.L861P	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	2	1	1	0.953699	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	5031646	12A2p6	cell line	sgMsh2	5031646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	37	6	3	0.5	exonic	Zfp865	nonsynonymous SNV	Zfp865:NM_001033383:exon2:c.T2629C:p.C877R	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9657091	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	5075496	12A2p6	cell line	sgMsh2	5075496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	75	180	32	0.177777778	exonic	U2af2	nonsynonymous SNV	"U2af2:NM_001205231:exon11:c.T1073C:p.L358P,U2af2:NM_133671:exon11:c.T1061C:p.L354P"	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7449869	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	5410476	12A2p6	cell line	sgMsh2	5410476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	219	0	0	NA	exonic	Vmn1r58	nonsynonymous SNV	Vmn1r58:NM_030739:exon2:c.A754G:p.I252V	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999992	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr7	6316961	12A2p6	cell line	sgMsh2	6316961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	111	14	5	0.357142857	exonic	Zfp583	nonsynonymous SNV	Zfp583:NM_001033249:exon5:c.T1051C:p.Y351H	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	6710043	12A2p6	cell line	sgMsh2	6710043	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	172	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.C2179T:p.P727S	7qA1	chr7-3896664-7472715	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9993485	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	7563747	12A2p6	cell line	sgMsh2	7563747	T	-	Deletion	Strelka2;Vardict	2	0.0522	134	0	0	NA	exonic	Vmn2r33	frameshift deletion	Vmn2r33:NM_001105065:exon2:c.365delA:p.N122Tfs*28	7qA1	chr7-7473826-9985088	2.44020085	1.44020085	1	0.9	4.102505121	NA	1	0.237945297	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7	chr7	8485542	12A2p6	cell line	sgMsh2	8485542	C	T	SNV	Mutect2;Vardict	2	0.055	80	0	0	NA	exonic	Vmn2r45	nonsynonymous SNV	Vmn2r45:NM_001105075:exon2:c.G488A:p.R163H	7qA1	chr7-7473826-9985088	2.44020085	1.44020085	1	0.9	4.102505121	NA	1	0.250708646	3	0.9995225	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr7	10037612	12A2p6	cell line	sgMsh2	10037612	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	168	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.A2209T:p.I737F	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999854	ATG	nonsynonymous	ATG	9	ATGATGATG	NA
M7	chr7	10168971	12A2p6	cell line	sgMsh2	10168971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	146	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.A1529G:p.K510R	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9987287	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	10274817	12A2p6	cell line	sgMsh2	10274817	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	123	0	0	NA	exonic	Vmn1r66	synonymous SNV	Vmn1r66:NM_134230:exon1:c.G288A:p.R96R	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9997651	TCC	synonymous	NA	NA	NA	NA
M7	chr7	10447657	12A2p6	cell line	sgMsh2	10447657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	155	0	0	NA	exonic	Vmn1r67	nonsynonymous SNV	Vmn1r67:NM_134229:exon1:c.T847C:p.F283L	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999696	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	10715024	12A2p6	cell line	sgMsh2	10715024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	178	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A1153G:p.N385D,Nlrp4b:NM_172481:exon4:c.A1153G:p.N385D"	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9999005	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	10748632	12A2p6	cell line	sgMsh2	10748632	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	114	0	0	NA	exonic	Vmn1r71	nonsynonymous SNV	Vmn1r71:NM_145848:exon1:c.C128T:p.T43I	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9967021	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr7	11669849	12A2p6	cell line	sgMsh2	11669849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	187	0	0	NA	exonic	Vmn1r72	nonsynonymous SNV	Vmn1r72:NM_145843:exon1:c.A671G:p.Y224C	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999995	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	12304990	12A2p6	cell line	sgMsh2	12304990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	188	0	0	NA	exonic	Vmn1r82	synonymous SNV	Vmn1r82:NM_134234:exon1:c.A186G:p.G62G	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999953	GAA	synonymous	NA	NA	NA	NA
M7	chr7	12305304	12A2p6	cell line	sgMsh2	12305304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	235	0	0	NA	exonic	Vmn1r82	nonsynonymous SNV	Vmn1r82:NM_134234:exon1:c.A500G:p.Y167C	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.09226113	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	12600724	12A2p6	cell line	sgMsh2	12600724	A	G	SNV	Mutect2;Vardict	2	0.026	455	0	0	NA	exonic	Vmn2r53	synonymous SNV	Vmn2r53:NM_001104644:exon3:c.T1224C:p.H408H	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.118516815	3	1	CAT	synonymous	NA	NA	NA	NA
M7	chr7	12632429	12A2p6	cell line	sgMsh2	12632429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	415	0	0	NA	exonic	Vmn2r54	nonsynonymous SNV	Vmn2r54:NM_001384946:exon3:c.T793C:p.C265R	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	1.31E-08	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	12670730	12A2p6	cell line	sgMsh2	12670730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	369	0	0	NA	exonic	Vmn2r55	nonsynonymous SNV	"Vmn2r55:NM_001104645:exon2:c.T745C:p.F249L,Vmn2r55:NM_001374650:exon3:c.T961C:p.F321L"	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.16E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	12670788	12A2p6	cell line	sgMsh2	12670788	A	T	SNV	Mutect2;Vardict	2	0.028	388	0	0	NA	exonic	Vmn2r55	synonymous SNV	"Vmn2r55:NM_001104645:exon2:c.T687A:p.T229T,Vmn2r55:NM_001374650:exon3:c.T903A:p.T301T"	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.127633493	3	1	GAG	synonymous	NA	NA	NA	NA
M7	chr7	12848937	12A2p6	cell line	sgMsh2	12848937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	152	78	20	0.256410256	exonic	Zfp110	nonsynonymous SNV	"Zfp110:NM_001360576:exon8:c.A1511G:p.K504R,Zfp110:NM_022981:exon8:c.A1511G:p.K504R"	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999639	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	12890211	12A2p6	cell line	sgMsh2	12890211	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	151	9	2	0.222222222	exonic	Zfp128	nonsynonymous SNV	Zfp128:NM_153802:exon4:c.A505C:p.S169R	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	AAG	nonsynonymous	TCAAAG	12	TCAAAGTCAAAG	NA
M7	chr7	13261283	12A2p6	cell line	sgMsh2	13261283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	101	5	1	0.2	exonic	Zswim9	nonsynonymous SNV	Zswim9:NM_177312:exon4:c.A946G:p.I316V	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9986476	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	13307544	12A2p6	cell line	sgMsh2	13307544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	94	102	11	0.107843137	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon25:c.T2252C:p.V751A,Lig1:NM_001199310:exon25:c.T2252C:p.V751A,Lig1:NM_010715:exon25:c.T2252C:p.V751A"	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	13931730	12A2p6	cell line	sgMsh2	13931730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	394	0	0	NA	exonic	Sult2a4	stopgain	Sult2a4:NM_001101534:exon4:c.G507A:p.W169X	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9999999	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	13931745	12A2p6	cell line	sgMsh2	13931745	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	382	0	0	NA	exonic	Sult2a4	nonsynonymous SNV	Sult2a4:NM_001101534:exon4:c.G492T:p.E164D	7qA1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.104841798	3	1	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	16434823	12A2p6	cell line	sgMsh2	16434823	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	82	126	1	0.007936508	exonic	Zc3h4	nonsynonymous SNV	Zc3h4:NM_198631:exon14:c.G3081T:p.K1027N	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.250708646	3	0.9996136	AGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	16456007	12A2p6	cell line	sgMsh2	16456007	C	T	SNV	Mutect2;Vardict	2	0.057	77	0	0	NA	exonic	Npas1	nonsynonymous SNV	Npas1:NM_008718:exon12:c.G1613A:p.R538Q	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.259825324	3	0.9988032	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr7	16865872	12A2p6	cell line	sgMsh2	16865872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	109	26	6	0.230769231	exonic	Prkd2	synonymous SNV	"Prkd2:NM_178900:exon16:c.T2259C:p.N753N,Prkd2:NM_001252458:exon17:c.T2259C:p.N753N"	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9873298	ATG	synonymous	GAGGAC	12	GAGGACGAGGAC	NA
M7	chr7	17814241	12A2p6	cell line	sgMsh2	17814241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	190	0	0	NA	exonic	Ceacam14	synonymous SNV	Ceacam14:NM_025957:exon2:c.T255C:p.A85A	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.154983527	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
M7	chr7	17917286	12A2p6	cell line	sgMsh2	17917286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	203	0	0	NA	exonic	Gm5155	synonymous SNV	Gm5155:NM_001378684:exon9:c.T2721C:p.D907D	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999998	ATA	synonymous	T	5	TTTTT	NA
M7	chr7	18013057	12A2p6	cell line	sgMsh2	18013057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	117	0	0	NA	exonic	Ceacam13	stopgain	"Ceacam13:NM_027210:exon3:c.T434A:p.L145X,Ceacam13:NM_028171:exon3:c.T434A:p.L145X"	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9935077	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	18069123	12A2p6	cell line	sgMsh2	18069123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	153	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon3:c.T453C:p.P151P,Ceacam12:NM_001162524:exon3:c.T453C:p.P151P,Ceacam12:NM_026087:exon3:c.T453C:p.P151P"	7qA2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999659	CTA	synonymous	NA	NA	NA	NA
M7	chr7	18350999	12A2p6	cell line	sgMsh2	18350999	A	G	SNV	Mutect2;Vardict	2	0.023	373	0	0	NA	exonic	Psg18	synonymous SNV	"Psg18:NM_001163685:exon2:c.T171C:p.N57N,Psg18:NM_011963:exon3:c.T534C:p.N178N"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.104841798	3	1	TAT	synonymous	NA	NA	NA	NA
M7	chr7	18612054	12A2p6	cell line	sgMsh2	18612054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	398	0	0	NA	exonic	Psg23	nonsynonymous SNV	Psg23:NM_020261:exon3:c.T715C:p.Y239H	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.03E-09	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	18681013	12A2p6	cell line	sgMsh2	18681013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	341	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.T956C:p.I319T	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.80E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	19091003	12A2p6	cell line	sgMsh2	19091003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	25	5	2	0.4	exonic	Dmpk	nonsynonymous SNV	"Dmpk:NM_001190491:exon10:c.T1307C:p.L436P,Dmpk:NM_001374651:exon10:c.T1292C:p.L431P,Dmpk:NM_001379257:exon10:c.T1307C:p.L436P,Dmpk:NM_032418:exon10:c.T1307C:p.L436P,Dmpk:NM_001190490:exon11:c.T1229C:p.L410P"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.953699	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	19179249	12A2p6	cell line	sgMsh2	19179249	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.318	25	0	0	NA	exonic	Eml2	synonymous SNV	Eml2:NM_001347582:exon2:c.T171C:p.S57S	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.953699	GTG	synonymous	NA	NA	NA	NA
M7	chr7	19179326	12A2p6	cell line	sgMsh2	19179326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	35	0	0	NA	exonic	Eml2	nonsynonymous SNV	Eml2:NM_001347582:exon2:c.A248G:p.K83R	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.973208	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	19371223	12A2p6	cell line	sgMsh2	19371223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	70	28	7	0.25	exonic	Ppp1r13l	nonsynonymous SNV	Ppp1r13l:NM_001010836:exon7:c.A919G:p.T307A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.991736	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	19523481	12A2p6	cell line	sgMsh2	19523481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	80	0	0	NA	exonic	Nkpd1	nonsynonymous SNV	Nkpd1:NM_027116:exon4:c.T1184C:p.L395P	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7957429	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	19764094	12A2p6	cell line	sgMsh2	19764094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	72	230	66	0.286956522	exonic	Bcam	nonsynonymous SNV	Bcam:NM_020486:exon8:c.T1003C:p.Y335H	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	19944783	12A2p6	cell line	sgMsh2	19944783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	80	18	0	0	exonic	Igsf23	synonymous SNV	"Igsf23:NM_001364024:exon2:c.A219G:p.E73E,Igsf23:NM_027308:exon2:c.A195G:p.E65E,Igsf23:NM_001364025:exon3:c.A81G:p.E27E"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	CTT	synonymous	NA	NA	NA	NA
M7	chr7	21272384	12A2p6	cell line	sgMsh2	21272384	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	173	0	0	NA	exonic	Vmn1r125	nonsynonymous SNV	Vmn1r125:NM_001166740:exon1:c.C206T:p.T69I	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.999989	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr7	23321572	12A2p6	cell line	sgMsh2	23321572	-	T	Insertion	Strelka2;Vardict	2	0.1039	539	0	0	NA	exonic	Nlrp4e	frameshift insertion	Nlrp4e:NM_001004194:exon2:c.1484dupT:p.G498Wfs*9	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.473611425	NA	NA	GAT	frameshift	T	8	TTTTTTTT	1
M7	chr7	23541176	12A2p6	cell line	sgMsh2	23541176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	373	0	0	NA	exonic	Vmn1r168	nonsynonymous SNV	Vmn1r168:NM_001166842:exon1:c.A457G:p.I153V	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.993174	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	23632779	12A2p6	cell line	sgMsh2	23632779	C	-	Deletion	Strelka2;Vardict	2	0.1579	304	0	0	NA	exonic	Vmn1r171	frameshift deletion	Vmn1r171:NM_030737:exon1:c.428delC:p.K145Nfs*2	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.719761732	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7	chr7	23866409	12A2p6	cell line	sgMsh2	23866409	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	221	0	0	NA	exonic	Vmn1r177	nonsynonymous SNV	Vmn1r177:NM_206872:exon1:c.T41A:p.V14E	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999993	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	24104956	12A2p6	cell line	sgMsh2	24104956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	120	21	0	0	exonic	Zfp180	nonsynonymous SNV	"Zfp180:NM_172483:exon3:c.T274C:p.F92L,Zfp180:NM_001289637:exon4:c.T727C:p.F243L,Zfp180:NM_001045486:exon5:c.T799C:p.F267L,Zfp180:NM_001289640:exon5:c.T697C:p.F233L,Zfp180:NM_001289641:exon5:c.T619C:p.F207L,Zfp180:NM_001289634:exon6:c.T727C:p.F243L"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.738450922	2	0.7039918	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	24140735	12A2p6	cell line	sgMsh2	24140735	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	162	7	1	0.142857143	exonic	Zfp235	nonsynonymous SNV	"Zfp235:NM_019941:exon5:c.A578G:p.N193S,Zfp235:NM_001360465:exon6:c.A788G:p.N263S"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9999177	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	24276267	12A2p6	cell line	sgMsh2	24276267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	71	10	2	0.2	exonic	Zfp93	nonsynonymous SNV	"Zfp93:NM_009567:exon4:c.A1676G:p.H559R,Zfp93:NM_001360227:exon5:c.A1730G:p.H577R"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	24515505	12A2p6	cell line	sgMsh2	24515505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	50	18	4	0.222222222	exonic	Zfp428	nonsynonymous SNV	"Zfp428:NM_001290461:exon3:c.T545C:p.M182T,Zfp428:NM_146183:exon3:c.T506C:p.M169T,Zfp428:NM_175142:exon3:c.T545C:p.M182T"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9883813	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr7	24722828	12A2p6	cell line	sgMsh2	24722828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	130	0	0	NA	exonic	Lypd11	synonymous SNV	"Lypd11:NM_177593:exon4:c.A495G:p.S165S,Lypd11:NM_001381982:exon6:c.A651G:p.S217S"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.7475676	2	0.6730531	GTG	synonymous	NA	NA	NA	NA
M7	chr7	25015880	12A2p6	cell line	sgMsh2	25015880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	36	13	0.361111111	exonic	Grik5	synonymous SNV	"Grik5:NM_001360067:exon16:c.T1392C:p.A464A,Grik5:NM_008168:exon16:c.T1965C:p.A655A"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	CAG	synonymous	NA	NA	NA	NA
M7	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	99	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	CGC	synonymous	C	5	CCCCC	NA
M7	chr7	25271203	12A2p6	cell line	sgMsh2	25271203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	52	43	10	0.23255814	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.T358C:p.Y120H	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.09216687	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr7	25271985	12A2p6	cell line	sgMsh2	25271985	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	28	13	4	0.307692308	exonic	Cic	synonymous SNV	Cic:NM_001302811:exon2:c.T1140A:p.A380A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9386704	CTG	synonymous	NA	NA	NA	NA
M7	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	59	42	10	0.238095238	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	25338521	12A2p6	cell line	sgMsh2	25338521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	21	33	13	0.393939394	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon14:c.A2461G:p.T821A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9425816	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	25395550	12A2p6	cell line	sgMsh2	25395550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	139	23	7	0.304347826	exonic	Lipe	synonymous SNV	Lipe:NM_010719:exon1:c.A60G:p.E20E	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7645373	CTT	synonymous	NA	NA	NA	NA
M7	chr7	25538649	12A2p6	cell line	sgMsh2	25538649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	192	1	0	0	exonic	Ceacam2	nonsynonymous SNV	"Ceacam2:NM_001113368:exon2:c.A349G:p.T117A,Ceacam2:NM_001113369:exon2:c.A349G:p.T117A,Ceacam2:NM_007543:exon2:c.A349G:p.T117A"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999963	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	25733271	12A2p6	cell line	sgMsh2	25733271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	210	288	56	0.194444444	exonic	Hnrnpul1	synonymous SNV	"Hnrnpul1:NM_001360789:exon9:c.T1065C:p.G355G,Hnrnpul1:NM_144922:exon9:c.T1365C:p.G455G"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9778849	TAC	synonymous	NA	NA	NA	NA
M7	chr7	25761460	12A2p6	cell line	sgMsh2	25761460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	108	1009	232	0.229930624	exonic	Axl	nonsynonymous SNV	"Axl:NM_001190975:exon16:c.A1832G:p.K611R,Axl:NM_001190974:exon17:c.A2096G:p.K699R,Axl:NM_009465:exon18:c.A2123G:p.K708R"	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9969401	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	26080708	12A2p6	cell line	sgMsh2	26080708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	153	0	0	NA	exonic	Cyp2b13	synonymous SNV	Cyp2b13:NM_007813:exon2:c.T282C:p.A94A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999659	CTT	synonymous	T	5	TTTTT	NA
M7	chr7	26808945	12A2p6	cell line	sgMsh2	26808945	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	108	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon1:c.T19A:p.F7I	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9694416	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	27157598	12A2p6	cell line	sgMsh2	27157598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	132	0	0	NA	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon7:c.A986G:p.Y329C	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9997556	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	27157834	12A2p6	cell line	sgMsh2	27157834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	122	0	0	NA	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon8:c.T1121C:p.V374A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.811384346	1	0.8485857	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	27240043	12A2p6	cell line	sgMsh2	27240043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	194	12	1	0.083333333	exonic	Coq8b	nonsynonymous SNV	Coq8b:NM_133770:exon7:c.A497G:p.N166S	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999952	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	27476451	12A2p6	cell line	sgMsh2	27476451	A	G	SNV	Mutect2;Vardict	2	0.062	67	47	1	0.021276596	exonic	Sertad3	synonymous SNV	Sertad3:NM_133210:exon2:c.A309G:p.L103L	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.282617019	3	0.9883053	TAG	synonymous	NA	NA	NA	NA
M7	chr7	27516896	12A2p6	cell line	sgMsh2	27516896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	53	6	2	0.333333333	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.A1238C:p.E413A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9901818	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	27528950	12A2p6	cell line	sgMsh2	27528950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	46	1	0	0	exonic	Hipk4	nonsynonymous SNV	Hipk4:NM_001033315:exon3:c.T824C:p.V275A	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9854647	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	28093319	12A2p6	cell line	sgMsh2	28093319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	55	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon8:c.A2747G:p.N916S	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.743009261	1	0.6335458	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	28104847	12A2p6	cell line	sgMsh2	28104847	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	172	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon14:c.C5379G:p.N1793K	7qA3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9997422	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr7	28540915	12A2p6	cell line	sgMsh2	28540915	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	119	0	0	NA	exonic	Sycn	synonymous SNV	Sycn:NM_026716:exon1:c.C6A:p.S2S	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	CCC	synonymous	NA	NA	NA	NA
M7	chr7	29045605	12A2p6	cell line	sgMsh2	29045605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	75	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon82:c.T11601C:p.T3867T	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.610817429	2	0.9410073	CAG	synonymous	NA	NA	NA	NA
M7	chr7	29061567	12A2p6	cell line	sgMsh2	29061567	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	53	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon65:c.A9629C:p.E3210A	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	29074854	12A2p6	cell line	sgMsh2	29074854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	52	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon44:c.T7154C:p.I2385T	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9720535	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	29087403	12A2p6	cell line	sgMsh2	29087403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon33:c.A4764G:p.P1588P	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9599064	CTG	synonymous	NA	NA	NA	NA
M7	chr7	29096187	12A2p6	cell line	sgMsh2	29096187	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.242	63	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon25:c.T3277C:p.F1093L	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	35	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.973208	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	29171856	12A2p6	cell line	sgMsh2	29171856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.175	16	0	0	NA	exonic	Ggn	synonymous SNV	"Ggn:NM_001358852:exon2:c.A660G:p.V220V,Ggn:NM_182694:exon2:c.A768G:p.V256V"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8258072	TAC	synonymous	NA	NA	NA	NA
M7	chr7	29185076	12A2p6	cell line	sgMsh2	29185076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	299	0	0	NA	exonic	Catsperg1	nonsynonymous SNV	"Catsperg1:NM_001164658:exon24:c.T2678C:p.V893A,Catsperg1:NM_001368407:exon24:c.T2837C:p.V946A"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	9.62E-09	CAC	nonsynonymous	ACC	16	ACCACCACCCACCACC	NA
M7	chr7	29225257	12A2p6	cell line	sgMsh2	29225257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	69	0	0	NA	exonic	Kcnk6	nonsynonymous SNV	Kcnk6:NM_001033525:exon3:c.T721C:p.Y241H	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9819794	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	30057402	12A2p6	cell line	sgMsh2	30057402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	72	17	3	0.176470588	exonic	Zfp82	nonsynonymous SNV	"Zfp82:NM_001252519:exon6:c.T254C:p.L85P,Zfp82:NM_177889:exon7:c.T344C:p.L115P"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.743009261	1	0.5547768	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	30190083	12A2p6	cell line	sgMsh2	30190083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	96	683	166	0.243045388	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon9:c.C690T:p.I230I	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9982687	TGA	synonymous	NA	NA	NA	NA
M7	chr7	30190555	12A2p6	cell line	sgMsh2	30190555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	1300	274	0.210769231	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon8:c.T528C:p.A176A	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998593	TAG	synonymous	NA	NA	NA	NA
M7	chr7	30241548	12A2p6	cell line	sgMsh2	30241548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	76	5	2	0.4	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon31:c.A3854G:p.N1285S	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9240797	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	30448368	12A2p6	cell line	sgMsh2	30448368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	50	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon15:c.A1854G:p.P618P	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9883813	GTG	synonymous	NA	NA	NA	NA
M7	chr7	30466064	12A2p6	cell line	sgMsh2	30466064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	48	0	0	NA	exonic	Nphs1	nonsynonymous SNV	Nphs1:NM_019459:exon14:c.T1855C:p.S619P	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	30540786	12A2p6	cell line	sgMsh2	30540786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	66	22	7	0.318181818	exonic	Proser3	nonsynonymous SNV	"Proser3:NM_001374643:exon9:c.T892C:p.C298R,Proser3:NM_001382459:exon10:c.T892C:p.C298R,Proser3:NM_183321:exon10:c.T892C:p.C298R"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.70198421	2	0.6142236	CAG	nonsynonymous	GTGCA	12	GTGCAGTGCAGT	NA
M7	chr7	30569294	12A2p6	cell line	sgMsh2	30569294	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	180	65	15	0.230769231	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon37:c.T8036G:p.I2679S,Kmt2b:NM_029274:exon37:c.T8009G:p.I2670S"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9993638	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	30736625	12A2p6	cell line	sgMsh2	30736625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	193	0	0	NA	exonic	Gapdhs	nonsynonymous SNV	"Gapdhs:NM_001290631:exon4:c.A539G:p.Y180C,Gapdhs:NM_008085:exon4:c.A533G:p.Y178C"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999965	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	30752922	12A2p6	cell line	sgMsh2	30752922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	193	0	0	NA	exonic	Sbsn	nonsynonymous SNV	Sbsn:NM_172205:exon1:c.T1361C:p.M454T	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999965	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr7	30790603	12A2p6	cell line	sgMsh2	30790603	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	121	0	0	NA	exonic	Krtdap	nonsynonymous SNV	"Krtdap:NM_001364009:exon4:c.C216A:p.D72E,Krtdap:NM_001364011:exon4:c.C216A:p.D72E,Krtdap:NM_001033131:exon5:c.C258A:p.D86E,Krtdap:NM_001364010:exon5:c.C258A:p.D86E"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997907	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr7	30877545	12A2p6	cell line	sgMsh2	30877545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	231	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon3:c.T336C:p.C112C,Cd22:NM_001043317:exon5:c.T336C:p.C112C"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9999737	TAC	synonymous	NA	NA	NA	NA
M7	chr7	30909069	12A2p6	cell line	sgMsh2	30909069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	43	0	0	NA	exonic	Mag	nonsynonymous SNV	"Mag:NM_001346085:exon5:c.A619G:p.T207A,Mag:NM_001346088:exon5:c.A619G:p.T207A,Mag:NM_001346084:exon6:c.A619G:p.T207A,Mag:NM_001346086:exon6:c.A619G:p.T207A,Mag:NM_001346087:exon6:c.A619G:p.T207A,Mag:NM_001346089:exon6:c.A493G:p.T165A,Mag:NM_001369262:exon6:c.A619G:p.T207A,Mag:NM_010758:exon6:c.A619G:p.T207A"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.774917634	1	0.7657271	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	30922524	12A2p6	cell line	sgMsh2	30922524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	266	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.T236G:p.I79S	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	34227208	12A2p6	cell line	sgMsh2	34227208	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	89	569	96	0.168717047	exonic	Gpi1	synonymous SNV	Gpi1:NM_008155:exon4:c.G312T:p.R104R	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9341173	TCC	synonymous	NA	NA	NA	NA
M7	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	255	60	4	0.066666667	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	236	81	0	0	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr7	34351479	12A2p6	cell line	sgMsh2	34351479	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	81	170	37	0.217647059	exonic	Lsm14a	nonsynonymous SNV	"Lsm14a:NM_001360656:exon8:c.A995C:p.N332T,Lsm14a:NM_001360654:exon9:c.A1172C:p.N391T,Lsm14a:NM_001360655:exon9:c.A1169C:p.N390T,Lsm14a:NM_025948:exon9:c.A1172C:p.N391T"	7qB1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	35206103	12A2p6	cell line	sgMsh2	35206103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	107	0	0	NA	exonic	Lrp3	nonsynonymous SNV	Lrp3:NM_001024707:exon4:c.A257G:p.N86S	7qB2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	35429212	12A2p6	cell line	sgMsh2	35429212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	70	20	0	0	exonic	Cep89	stopgain	Cep89:NM_028120:exon16:c.A1789T:p.K597X	7qB2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9962344	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	35555491	12A2p6	cell line	sgMsh2	35555491	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	15	7	1	0.142857143	exonic	Nudt19	nonsynonymous SNV	Nudt19:NM_033080:exon1:c.T314G:p.L105R	7qB2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9211255	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	36771832	12A2p6	cell line	sgMsh2	36771832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	95	0	0	NA	exonic	Tshz3	stoploss	Tshz3:NM_172298:exon2:c.A3245G:p.X1082W	7qB2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	38106650	12A2p6	cell line	sgMsh2	38106650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	149	33	10	0.303030303	exonic	Ccne1	synonymous SNV	Ccne1:NM_007633:exon3:c.A48G:p.E16E	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999572	CTT	synonymous	CTT	9	CTTCTTCTT	NA
M7	chr7	39537148	12A2p6	cell line	sgMsh2	39537148	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	84	0	0	NA	exonic	Zfp619	nonsynonymous SNV	Zfp619:NM_001004139:exon4:c.A2601C:p.K867N	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	40993301	12A2p6	cell line	sgMsh2	40993301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	197	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G393A:p.L131L	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999972	TGG	synonymous	G	5	GGGGG	NA
M7	chr7	41286204	12A2p6	cell line	sgMsh2	41286204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	224	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon2:c.A129G:p.P43P	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.999789	CAG	synonymous	NA	NA	NA	NA
M7	chr7	41862058	12A2p6	cell line	sgMsh2	41862058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	147	0	0	NA	exonic	Vmn2r58	synonymous SNV	Vmn2r58:NM_001105055:exon4:c.C1320T:p.F440F	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999521	GGA	synonymous	NA	NA	NA	NA
M7	chr7	41864200	12A2p6	cell line	sgMsh2	41864200	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	377	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon3:c.A1018G:p.T340A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.10E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	42042443	12A2p6	cell line	sgMsh2	42042443	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	230	0	0	NA	exonic	Vmn2r59	synonymous SNV	Vmn2r59:NM_001105056:exon5:c.C1629T:p.P543P	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999996	AGG	synonymous	NA	NA	NA	NA
M7	chr7	42195225	12A2p6	cell line	sgMsh2	42195225	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	353	0	0	NA	exonic	Vmn2r60	nonsynonymous SNV	Vmn2r60:NM_001105057:exon6:c.G2011T:p.V671L	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.487742276	2	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr7	42764925	12A2p6	cell line	sgMsh2	42764925	C	T	SNV	Mutect2;Vardict	2	0.022	388	0	0	NA	exonic	Vmn2r62	nonsynonymous SNV	Vmn2r62:NM_001105059:exon6:c.G2093A:p.G698E	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.100283459	3	1	CCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	43442166	12A2p6	cell line	sgMsh2	43442166	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	116	0	0	NA	exonic	Cldnd2	nonsynonymous SNV	Cldnd2:NM_028849:exon3:c.A170C:p.N57T	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	43464830	12A2p6	cell line	sgMsh2	43464830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	exonic	Vsig10l	nonsynonymous SNV	"Vsig10l:NM_001290316:exon3:c.A575G:p.Q192R,Vsig10l:NM_001368881:exon3:c.A881G:p.Q294R"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9545925	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	43467453	12A2p6	cell line	sgMsh2	43467453	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	47	2	0	0	exonic	Vsig10l	nonsynonymous SNV	"Vsig10l:NM_001290316:exon6:c.C1411T:p.P471S,Vsig10l:NM_001368881:exon6:c.C1717T:p.P573S"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9643951	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	43938521	12A2p6	cell line	sgMsh2	43938521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	100	0	0	NA	exonic	Klk15	synonymous SNV	Klk15:NM_174865:exon4:c.G372A:p.A124A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	CGC	synonymous	NA	NA	NA	NA
M7	chr7	44361088	12A2p6	cell line	sgMsh2	44361088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	91	0	0	NA	exonic	1700008O03Rik	synonymous SNV	1700008O03Rik:NM_027049:exon5:c.T357C:p.N119N	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.998853	TAT	synonymous	NA	NA	NA	NA
M7	chr7	44461349	12A2p6	cell line	sgMsh2	44461349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	63	0	0	NA	exonic	Lrrc4b	nonsynonymous SNV	Lrrc4b:NM_198250:exon3:c.A644G:p.N215S	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	44542145	12A2p6	cell line	sgMsh2	44542145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	31	51	14	0.274509804	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon4:c.T416C:p.I139T	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.907109466	1	0.9251212	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	44595658	12A2p6	cell line	sgMsh2	44595658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	169	0	0	NA	exonic	Kcnc3	synonymous SNV	"Kcnc3:NM_001290682:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385625:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385626:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385627:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385628:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385629:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385630:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385631:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385632:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385633:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385634:exon2:c.T276C:p.A92A,Kcnc3:NM_001385635:exon2:c.T276C:p.A92A,Kcnc3:NM_001385636:exon2:c.T276C:p.A92A,Kcnc3:NM_001385637:exon2:c.T276C:p.A92A,Kcnc3:NM_008422:exon2:c.T1371C:p.A457A"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	CTC	synonymous	G	5	GGGGG	NA
M7	chr7	44815096	12A2p6	cell line	sgMsh2	44815096	A	C	SNV	Mutect2;Vardict	2	0.19	22	23	9	0.391304348	exonic	Atf5	nonsynonymous SNV	Atf5:NM_030693:exon2:c.T71G:p.L24R	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.8790815	GAG	nonsynonymous	AGCC	8	AGCCAGCC	NA
M7	chr7	44839809	12A2p6	cell line	sgMsh2	44839809	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	66	0	0	NA	exonic	Il4i1;Il4i1b	stopgain	"Il4i1:NM_010215:exon8:c.997delT:p.L333fs*0,Il4i1b:NM_001171024:exon9:c.1021delT:p.L341fs*0"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.897992788	NA	NA	CTT	nonsynonymous	NA	NA	NA	-1
M7	chr7	44854096	12A2p6	cell line	sgMsh2	44854096	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.165	33	175	45	0.257142857	exonic	Akt1s1	nonsynonymous SNV	"Akt1s1:NM_001290695:exon3:c.G315T:p.E105D,Akt1s1:NM_001253920:exon4:c.G618T:p.E206D,Akt1s1:NM_001290694:exon4:c.G696T:p.E232D,Akt1s1:NM_001382480:exon4:c.G618T:p.E206D,Akt1s1:NM_001382481:exon4:c.G618T:p.E206D,Akt1s1:NM_001382482:exon4:c.G618T:p.E206D,Akt1s1:NM_001382483:exon4:c.G618T:p.E206D,Akt1s1:NM_026270:exon4:c.G618T:p.E206D,Akt1s1:NM_001382484:exon5:c.G618T:p.E206D"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.752125939	1	0.7427279	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	44901059	12A2p6	cell line	sgMsh2	44901059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	72	86	26	0.302325581	exonic	Ap2a1	synonymous SNV	"Ap2a1:NM_001077264:exon22:c.T2718C:p.G906G,Ap2a1:NM_007458:exon23:c.T2784C:p.G928G"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.5306962	CAC	synonymous	NA	NA	NA	NA
M7	chr7	44905812	12A2p6	cell line	sgMsh2	44905812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	122	108	22	0.203703704	exonic	Ap2a1	nonsynonymous SNV	"Ap2a1:NM_001077264:exon11:c.T1328C:p.V443A,Ap2a1:NM_007458:exon11:c.T1328C:p.V443A"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9970843	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	44943392	12A2p6	cell line	sgMsh2	44943392	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	38	0	0	NA	exonic	Tsks	frameshift deletion	"Tsks:NM_001077591:exon1:c.109delG:p.V39fs*0,Tsks:NM_011651:exon1:c.109delG:p.V39fs*0"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.98004289	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M7	chr7	45002309	12A2p6	cell line	sgMsh2	45002309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	96	42	17	0.404761905	exonic	Irf3	nonsynonymous SNV	Irf3:NM_016849:exon8:c.T1223C:p.V408A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	45018154	12A2p6	cell line	sgMsh2	45018154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	32	76	15	0.197368421	exonic	Rras	nonsynonymous SNV	Rras:NM_009101:exon1:c.A139G:p.I47V	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9683943	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	45088550	12A2p6	cell line	sgMsh2	45088550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	64	22	3	0.136363636	exonic	Rcn3	synonymous SNV	"Rcn3:NM_001355045:exon3:c.G393A:p.G131G,Rcn3:NM_026555:exon3:c.G393A:p.G131G"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9372217	GCC	synonymous	NA	NA	NA	NA
M7	chr7	45127567	12A2p6	cell line	sgMsh2	45127567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	169	3996	918	0.22972973	exonic	Rpl13a	nonsynonymous SNV	Rpl13a:NM_009438:exon2:c.T17C:p.V6A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	45353587	12A2p6	cell line	sgMsh2	45353587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	46	1	0	0	exonic	Ppfia3	nonsynonymous SNV	Ppfia3:NM_029741:exon14:c.T1597C:p.Y533H	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9854647	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	45360626	12A2p6	cell line	sgMsh2	45360626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	60	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon3:c.T252C:p.A84A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9608687	GAG	synonymous	NA	NA	NA	NA
M7	chr7	45369292	12A2p6	cell line	sgMsh2	45369292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	116	1	1	1	exonic	Lin7b	nonsynonymous SNV	Lin7b:NM_011698:exon4:c.T287C:p.L96P	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	45516578	12A2p6	cell line	sgMsh2	45516578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	87	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon3:c.G124A:p.D42N,Tulp2:NM_001290998:exon3:c.G88A:p.D30N,Tulp2:NM_001290999:exon3:c.G124A:p.D42N,Tulp2:NM_001045555:exon6:c.G460A:p.D154N,Tulp2:NM_008807:exon6:c.G460A:p.D154N"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	45518619	12A2p6	cell line	sgMsh2	45518619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	88	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon5:c.T454C:p.S152P,Tulp2:NM_001290998:exon5:c.T418C:p.S140P,Tulp2:NM_001290999:exon5:c.T454C:p.S152P,Tulp2:NM_001045555:exon8:c.T790C:p.S264P,Tulp2:NM_008807:exon8:c.T790C:p.S264P"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	45566174	12A2p6	cell line	sgMsh2	45566174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	105	82	18	0.219512195	exonic	Hsd17b14	synonymous SNV	Hsd17b14:NM_025330:exon8:c.T597C:p.T199T	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5724799	CTT	synonymous	NA	NA	NA	NA
M7	chr7	45588276	12A2p6	cell line	sgMsh2	45588276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	133	147	27	0.183673469	exonic	Bcat2	nonsynonymous SNV	"Bcat2:NM_001243052:exon9:c.A845T:p.K282M,Bcat2:NM_009737:exon9:c.A965T:p.K322M"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	45650957	12A2p6	cell line	sgMsh2	45650957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	201	13	8	0.615384615	exonic	Fut2	synonymous SNV	"Fut2:NM_018876:exon2:c.T390C:p.N130N,Fut2:NM_001271993:exon3:c.T390C:p.N130N"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999978	AAT	synonymous	NA	NA	NA	NA
M7	chr7	45711648	12A2p6	cell line	sgMsh2	45711648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	108	42	12	0.285714286	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon6:c.C931T:p.H311Y,Sphk2:NM_020011:exon6:c.C931T:p.H311Y,Sphk2:NM_203280:exon7:c.C931T:p.H311Y"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995624	TGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	45712131	12A2p6	cell line	sgMsh2	45712131	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	99	46	9	0.195652174	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon5:c.G694A:p.V232M,Sphk2:NM_020011:exon5:c.G694A:p.V232M,Sphk2:NM_203280:exon6:c.G694A:p.V232M"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr7	45723468	12A2p6	cell line	sgMsh2	45723468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	89	5	0	0	exonic	Fam83e	nonsynonymous SNV	Fam83e:NM_001033170:exon2:c.A502G:p.T168A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.597142412	2	0.9810417	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	45826061	12A2p6	cell line	sgMsh2	45826061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	55	90	20	0.222222222	exonic	Grwd1	synonymous SNV	Grwd1:NM_153419:exon7:c.T1056C:p.H352H	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.729334244	1	0.5805547	TAT	synonymous	NA	NA	NA	NA
M7	chr7	45834817	12A2p6	cell line	sgMsh2	45834817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	50	3	0	0	exonic	Grin2d	synonymous SNV	Grin2d:NM_008172:exon10:c.C2253T:p.D751D	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9883813	CGT	synonymous	NA	NA	NA	NA
M7	chr7	45918149	12A2p6	cell line	sgMsh2	45918149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	53	102	27	0.264705882	exonic	Emp3	nonsynonymous SNV	"Emp3:NM_001146346:exon5:c.T409C:p.Y137H,Emp3:NM_010129:exon5:c.T409C:p.Y137H"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9901818	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	45948460	12A2p6	cell line	sgMsh2	45948460	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.155	41	3	0	0	exonic	Ccdc114	nonsynonymous SNV	"Ccdc114:NM_001364168:exon15:c.T1901C:p.L634P,Ccdc114:NM_001374632:exon15:c.T1901C:p.L634P"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.706542549	1	0.5926704	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	46033961	12A2p6	cell line	sgMsh2	46033961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	72	88	14	0.159090909	exonic	Nomo1	nonsynonymous SNV	Nomo1:NM_153057:exon1:c.T130C:p.S44P	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.733892583	1	0.5064718	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	46259908	12A2p6	cell line	sgMsh2	46259908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	117	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon17:c.T1801C:p.S601P	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	46662185	12A2p6	cell line	sgMsh2	46662185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	84	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T132G:p.N44K,Tph1:NM_001276372:exon3:c.T132G:p.N44K,Tph1:NM_009414:exon3:c.T132G:p.N44K"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	0.7973599	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	46740785	12A2p6	cell line	sgMsh2	46740785	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	124	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.T288G:p.A96A,Saa1:NM_009117:exon4:c.T288G:p.A96A"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.79315099	1	0.7420962	CAG	synonymous	NA	NA	NA	NA
M7	chr7	46740812	12A2p6	cell line	sgMsh2	46740812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	125	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.C261T:p.F87F,Saa1:NM_009117:exon4:c.C261T:p.F87F"	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998332	CGA	synonymous	NA	NA	NA	NA
M7	chr7	47008133	12A2p6	cell line	sgMsh2	47008133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	48	46	9	0.195652174	exonic	Spty2d1	nonsynonymous SNV	Spty2d1:NM_175318:exon1:c.T2C:p.M1T	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	47235251	12A2p6	cell line	sgMsh2	47235251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	202	0	0	NA	exonic	Mrgpra9	nonsynonymous SNV	Mrgpra9:NM_001288801:exon2:c.A667G:p.T223A	7qB3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999979	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	48168688	12A2p6	cell line	sgMsh2	48168688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	180	0	0	NA	exonic	Mrgprb5	nonsynonymous SNV	Mrgprb5:NM_207538:exon1:c.T298C:p.F100L	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999926	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr7	48643213	12A2p6	cell line	sgMsh2	48643213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	158	0	0	NA	exonic	Mrgprb3	nonsynonymous SNV	Mrgprb3:NM_207537:exon1:c.T589C:p.F197L	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999743	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	49781143	12A2p6	cell line	sgMsh2	49781143	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.132	35	62	15	0.241935484	exonic	Prmt3	synonymous SNV	Prmt3:NM_133740:exon4:c.T264C:p.I88I	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.601700751	2	0.6292444	TTA	synonymous	NA	NA	NA	NA
M7	chr7	50599833	12A2p6	cell line	sgMsh2	50599833	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	192	0	0	NA	exonic	4933405O20Rik	nonsynonymous SNV	4933405O20Rik:NM_172901:exon1:c.C614T:p.A205V	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.150425188	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	51546678	12A2p6	cell line	sgMsh2	51546678	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	145	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon6:c.A314T:p.K105I,Ano5:NM_177694:exon7:c.A356T:p.K119I"	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	51574860	12A2p6	cell line	sgMsh2	51574860	T	-	Deletion	Strelka2;Vardict	2	0.2195	82	0	0	NA	exonic	Ano5	frameshift deletion	"Ano5:NM_001271879:exon14:c.1521delT:p.Y510Mfs*37,Ano5:NM_177694:exon15:c.1563delT:p.Y524Mfs*25"	7qB4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M7	chr7	55944531	12A2p6	cell line	sgMsh2	55944531	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	66	137	22	0.160583942	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256131:exon2:c.T89G:p.L30W,Nipa2:NM_001256130:exon3:c.T89G:p.L30W,Nipa2:NM_001256132:exon3:c.T89G:p.L30W,Nipa2:NM_023647:exon3:c.T89G:p.L30W"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9392076	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	55979873	12A2p6	cell line	sgMsh2	55979873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	74	28	9	0.321428571	exonic	Nipa1	nonsynonymous SNV	Nipa1:NM_153578:exon5:c.T491C:p.L164P	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.984601229	1	0.9957982	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	56085107	12A2p6	cell line	sgMsh2	56085107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	93	38	11	0.289473684	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon5:c.C444T:p.L148L,Herc2:NM_010418:exon5:c.C444T:p.L148L"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	TCG	synonymous	NA	NA	NA	NA
M7	chr7	56182642	12A2p6	cell line	sgMsh2	56182642	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	148	39	12	0.307692308	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon59:c.A9085G:p.M3029V,Herc2:NM_010418:exon59:c.A9085G:p.M3029V"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	56184375	12A2p6	cell line	sgMsh2	56184375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	140	57	16	0.280701754	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon61:c.T9327C:p.S3109S,Herc2:NM_010418:exon61:c.T9327C:p.S3109S"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999076	GTT	synonymous	NA	NA	NA	NA
M7	chr7	56984956	12A2p6	cell line	sgMsh2	56984956	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	74	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon4:c.C478A:p.L160I	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9668613	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	57408671	12A2p6	cell line	sgMsh2	57408671	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	79	0	0	NA	exonic	Gabra5	stopgain	"Gabra5:NM_001362161:exon10:c.T1328A:p.L443X,Gabra5:NM_176942:exon10:c.T1328A:p.L443X,Gabra5:NM_001362162:exon11:c.T1328A:p.L443X"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9455143	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	59276594	12A2p6	cell line	sgMsh2	59276594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	141	210	54	0.257142857	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon4:c.A1119G:p.E373E,Ube3a:NM_011668:exon6:c.A1182G:p.E394E"	7qB5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9916957	AAC	synonymous	NA	NA	NA	NA
M7	chr7	62378894	12A2p6	cell line	sgMsh2	62378894	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	79	0	0	NA	exonic	Magel2	synonymous SNV	Magel2:NM_013779:exon1:c.C1545T:p.G515G	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.268942002	3	0.998177	GCC	synonymous	NA	NA	NA	NA
M7	chr7	63757608	12A2p6	cell line	sgMsh2	63757608	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.263	100	0	0	NA	exonic	Otud7a	nonsynonymous SNV	Otud7a:NM_130880:exon14:c.A1658G:p.N553S	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	63757613	12A2p6	cell line	sgMsh2	63757613	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	102	0	0	NA	exonic	Otud7a	frameshift deletion	Otud7a:NM_130880:exon14:c.1663delA:p.N556Tfs*65	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr7	64199257	12A2p6	cell line	sgMsh2	64199257	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	86	0	0	NA	exonic	Trpm1	stopgain	Trpm1:NM_001039104:exon3:c.C250T:p.Q84X	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.624492446	2	0.9553684	GCA	nonsynonymous	NA	NA	NA	NA
M7	chr7	64819876	12A2p6	cell line	sgMsh2	64819876	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	140	0	0	NA	exonic	Fam189a1	synonymous SNV	Fam189a1:NM_183087:exon4:c.G411A:p.V137V	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.218800273	3	1.91E-08	ACA	synonymous	AC	8	ACACACAC	NA
M7	chr7	65312728	12A2p6	cell line	sgMsh2	65312728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	114	238	45	0.18907563	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon20:c.G3460A:p.E1154K,Tjp1:NM_009386:exon21:c.G3700A:p.E1234K"	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9992888	TCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	65313005	12A2p6	cell line	sgMsh2	65313005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	119	225	36	0.16	exonic	Tjp1	synonymous SNV	"Tjp1:NM_001163574:exon20:c.T3183C:p.S1061S,Tjp1:NM_009386:exon21:c.T3423C:p.S1141S"	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.9493583	TAC	synonymous	NA	NA	NA	NA
M7	chr7	66074375	12A2p6	cell line	sgMsh2	66074375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	208	166	48	0.289156627	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon9:c.T763C:p.S255P	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999985	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	66171343	12A2p6	cell line	sgMsh2	66171343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	133	62	13	0.209677419	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A1325G:p.Y442C	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999894	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	66710274	12A2p6	cell line	sgMsh2	66710274	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	5	0	0	exonic	Lins1	synonymous SNV	"Lins1:NM_001191001:exon6:c.G783A:p.L261L,Lins1:NM_152815:exon6:c.G798A:p.L266L"	7qC	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9962893	TGA	synonymous	NA	NA	NA	NA
M7	chr7	74346684	12A2p6	cell line	sgMsh2	74346684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	51	60	11	0.183333333	exonic	Slco3a1	nonsynonymous SNV	"Slco3a1:NM_001038643:exon4:c.C973T:p.P325S,Slco3a1:NM_023908:exon4:c.C973T:p.P325S"	7qD1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.6666906	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	78450974	12A2p6	cell line	sgMsh2	78450974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	157	0	0	NA	exonic	Ntrk3	nonsynonymous SNV	"Ntrk3:NM_008746:exon11:c.G1309A:p.G437R,Ntrk3:NM_182809:exon11:c.G1309A:p.G437R"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999728	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr7	78843901	12A2p6	cell line	sgMsh2	78843901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	137	12	0	0	exonic	Det1	synonymous SNV	Det1:NM_029585:exon2:c.T354G:p.G118G	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.9869163	GAC	synonymous	NA	NA	NA	NA
M7	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	138	184	39	0.211956522	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	CAG	synonymous	AGA	8	AGAAGAAG	NA
M7	chr7	79089869	12A2p6	cell line	sgMsh2	79089869	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	104	291	76	0.261168385	exonic	Acan	nonsynonymous SNV	"Acan:NM_001361500:exon6:c.T1024A:p.S342T,Acan:NM_007424:exon6:c.T1024A:p.S342T"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999451	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	79456091	12A2p6	cell line	sgMsh2	79456091	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	157	45	4	0.088888889	exonic	Polg	frameshift deletion	"Polg:NM_001360096:exon12:c.1336delT:p.Y446Ifs*3,Polg:NM_001360095:exon13:c.421delT:p.Y141Ifs*3,Polg:NM_017462:exon13:c.2149delT:p.Y717Ifs*3"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.802267668	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr7	79695307	12A2p6	cell line	sgMsh2	79695307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	42	13	4	0.307692308	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.C4919T:p.T1640I	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	ACC	nonsynonymous	C	5	CCCCC	NA
M7	chr7	79695794	12A2p6	cell line	sgMsh2	79695794	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	87	22	4	0.181818182	exonic	Ticrr	synonymous SNV	Ticrr:NM_029835:exon20:c.A5406G:p.S1802S	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CAG	synonymous	CCACT	11	CCACTCCACTC	NA
M7	chr7	79749977	12A2p6	cell line	sgMsh2	79749977	C	G	SNV	Mutect2;Vardict	2	0.045	97	1	0	0	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.C313G:p.P105A,Wdr93:NM_001381990:exon3:c.C313G:p.P105A,Wdr93:NM_001381991:exon3:c.C313G:p.P105A,Wdr93:NM_001381992:exon4:c.C313G:p.P105A"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	0.9999982	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	80082188	12A2p6	cell line	sgMsh2	80082188	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	67	34	4	0.117647059	exonic	Zfp710	nonsynonymous SNV	"Zfp710:NM_001145999:exon2:c.A1112T:p.H371L,Zfp710:NM_001146000:exon2:c.A1112T:p.H371L,Zfp710:NM_175433:exon2:c.A1112T:p.H371L"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9955388	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	28	34	13	0.382352941	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.96066	GCC	synonymous	NA	NA	NA	NA
M7	chr7	80327604	12A2p6	cell line	sgMsh2	80327604	G	A	SNV	Mutect2;Vardict	2	0.07	62	45	0	0	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon17:c.C2282T:p.A761V	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.319083732	3	0.8914057	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	80328797	12A2p6	cell line	sgMsh2	80328797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.215	34	66	14	0.212121212	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon14:c.T1902C:p.A634A	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.965614	GAG	synonymous	NA	NA	NA	NA
M7	chr7	80359748	12A2p6	cell line	sgMsh2	80359748	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	57	37	4	0.108108108	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon17:c.G2357A:p.R786Q	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9246004	CCG	nonsynonymous	NA	NA	NA	NA
M7	chr7	80378069	12A2p6	cell line	sgMsh2	80378069	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	43	15	2	0.133333333	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon19:c.C2332T:p.R778C	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9828142	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	80381638	12A2p6	cell line	sgMsh2	80381638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	46	25	6	0.24	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon11:c.A1493G:p.D498G	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9854647	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	80514615	12A2p6	cell line	sgMsh2	80514615	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	256	21	3	0.142857143	exonic	Blm	nonsynonymous SNV	"Blm:NM_001042527:exon2:c.A72C:p.Q24H,Blm:NM_007550:exon2:c.A81C:p.Q27H"	7qD2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	80725593	12A2p6	cell line	sgMsh2	80725593	A	G	SNV	Mutect2;Vardict	2	0.045	145	570	28	0.049122807	exonic	Iqgap1	synonymous SNV	Iqgap1:NM_016721:exon33:c.T4242C:p.N1414N	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	2.70E-09	CAT	synonymous	NA	NA	NA	NA
M7	chr7	80730246	12A2p6	cell line	sgMsh2	80730246	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	207	268	0	0	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon27:c.3466delA:p.I1156Sfs*11	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.929901161	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	36	15	5	0.333333333	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9746481	CAT	synonymous	NA	NA	NA	NA
M7	chr7	81095526	12A2p6	cell line	sgMsh2	81095526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	138	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon8:c.G4021A:p.E1341K	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	81351885	12A2p6	cell line	sgMsh2	81351885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	109	1	0	0	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon7:c.A1030G:p.R344G,Cpeb1:NM_001252525:exon9:c.A1273G:p.R425G,Cpeb1:NM_001252526:exon9:c.A1255G:p.R419G,Cpeb1:NM_007755:exon9:c.A1270G:p.R424G"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995866	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	81974690	12A2p6	cell line	sgMsh2	81974690	T	C	SNV	Mutect2;Vardict	2	0.052	84	0	0	NA	exonic	Bnc1	nonsynonymous SNV	Bnc1:NM_007562:exon4:c.A788G:p.Y263C	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.237033629	3	0.9998832	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	82260192	12A2p6	cell line	sgMsh2	82260192	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	174	0	0	NA	exonic	Sh3gl3	nonsynonymous SNV	Sh3gl3:NM_017400:exon2:c.A106G:p.M36V	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.200566917	3	1.01E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	82598090	12A2p6	cell line	sgMsh2	82598090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	148	0	0	NA	exonic	Adamtsl3	nonsynonymous SNV	Adamtsl3:NM_001190374:exon25:c.T4253C:p.V1418A	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	82683023	12A2p6	cell line	sgMsh2	82683023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	253	64	11	0.171875	exonic	Efl1	nonsynonymous SNV	"Efl1:NM_001159672:exon9:c.T874G:p.L292V,Efl1:NM_175317:exon9:c.T874G:p.L292V"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9999888	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	82686684	12A2p6	cell line	sgMsh2	82686684	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	118	59	3	0.050847458	exonic	Efl1	synonymous SNV	"Efl1:NM_001159672:exon12:c.T1212C:p.S404S,Efl1:NM_175317:exon12:c.T1212C:p.S404S"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.227916951	3	0.9999991	GTG	synonymous	NA	NA	NA	NA
M7	chr7	82867884	12A2p6	cell line	sgMsh2	82867884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	160	25	2	0.08	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon1:c.G234A:p.P78P	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9985057	CGG	synonymous	NA	NA	NA	NA
M7	chr7	83618603	12A2p6	cell line	sgMsh2	83618603	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	47	0	0	NA	exonic	Tmc3	frameshift deletion	Tmc3:NM_177695:exon21:c.2274delA:p.K759Sfs*19	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.948134517	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr7	83618621	12A2p6	cell line	sgMsh2	83618621	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.175	44	0	0	NA	exonic	Tmc3	synonymous SNV	Tmc3:NM_177695:exon21:c.A2292G:p.Q764Q	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8132178	AAG	synonymous	NA	NA	NA	NA
M7	chr7	84343763	12A2p6	cell line	sgMsh2	84343763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	73	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon5:c.A601G:p.T201A	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	84594768	12A2p6	cell line	sgMsh2	84594768	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	137	40	0.291970803	exonic	Fah	nonsynonymous SNV	Fah:NM_010176:exon9:c.C782T:p.P261L	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	CGG	nonsynonymous	CCAC	8	CCACCCAC	NA
M7	chr7	84856838	12A2p6	cell line	sgMsh2	84856838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	368	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T474C:p.S158S	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.770359295	2	0.9245335	CTT	synonymous	NA	NA	NA	NA
M7	chr7	84916249	12A2p6	cell line	sgMsh2	84916249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	441	0	0	NA	exonic	Olfr290	nonsynonymous SNV	Olfr290:NM_146416:exon1:c.T469C:p.F157L	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	85406881	12A2p6	cell line	sgMsh2	85406881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	397	0	0	NA	exonic	Vmn2r69	nonsynonymous SNV	Vmn2r69:NM_001105182:exon6:c.T2048C:p.M683T	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	2.72E-09	CAT	nonsynonymous	TTC	9	TTCTTCTTC	NA
M7	chr7	85415554	12A2p6	cell line	sgMsh2	85415554	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	169	0	0	NA	exonic	Vmn2r69	synonymous SNV	Vmn2r69:NM_001105182:exon1:c.T123G:p.T41T	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9998836	AAG	synonymous	NA	NA	NA	NA
M7	chr7	85749164	12A2p6	cell line	sgMsh2	85749164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	155	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon5:c.T1592C:p.F531S	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9861051	AAA	nonsynonymous	ACAA	9	ACAAACAAA	NA
M7	chr7	85871617	12A2p6	cell line	sgMsh2	85871617	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.132	313	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.C1142A:p.P381Q	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.601700751	2	2.61E-08	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	85871998	12A2p6	cell line	sgMsh2	85871998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	102	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.A761G:p.N254S	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9961434	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	85957206	12A2p6	cell line	sgMsh2	85957206	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	168	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon3:c.T922G:p.Y308D	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9994065	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	86228859	12A2p6	cell line	sgMsh2	86228859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	48	0	0	NA	exonic	Vmn2r76	synonymous SNV	Vmn2r76:NM_001384930:exon4:c.T1320C:p.H440H	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	AAT	synonymous	NA	NA	NA	NA
M7	chr7	86269177	12A2p6	cell line	sgMsh2	86269177	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	247	0	0	NA	exonic	Olfr310	nonsynonymous SNV	Olfr310:NM_001011520:exon1:c.T611G:p.V204G	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	86306382	12A2p6	cell line	sgMsh2	86306382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	148	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.A730G:p.M244V	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9996413	ATG	nonsynonymous	CAC	8	CACCACCA	NA
M7	chr7	86306696	12A2p6	cell line	sgMsh2	86306696	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	191	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.G416A:p.C139Y	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	3	1.00E-09	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr7	86335914	12A2p6	cell line	sgMsh2	86335914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	240	0	0	NA	exonic	Olfr307	nonsynonymous SNV	Olfr307:NM_146617:exon1:c.A481G:p.T161A	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9998707	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	86412425	12A2p6	cell line	sgMsh2	86412425	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	284	0	0	NA	exonic	Olfr301	nonsynonymous SNV	Olfr301:NM_212436:exon3:c.T62G:p.L21R	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	86488673	12A2p6	cell line	sgMsh2	86488673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	213	0	0	NA	exonic	Olfr298	nonsynonymous SNV	Olfr298:NM_001011751:exon1:c.A877G:p.S293G	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.788592651	1	0.5926684	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	86695231	12A2p6	cell line	sgMsh2	86695231	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	157	0	0	NA	exonic	Olfr292	frameshift deletion	Olfr292:NM_146620:exon2:c.774delA:p.K259Nfs*7	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.806826007	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr7	87002027	12A2p6	cell line	sgMsh2	87002027	T	C	SNV	Mutect2;Vardict	2	0.029	323	0	0	NA	exonic	Vmn2r79	synonymous SNV	Vmn2r79:NM_001105190:exon3:c.T633C:p.D211D	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	ATG	synonymous	GAT	8	GATGATGA	NA
M7	chr7	87037641	12A2p6	cell line	sgMsh2	87037641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	388	0	0	NA	exonic	Vmn2r79	synonymous SNV	Vmn2r79:NM_001105190:exon6:c.T2229C:p.C743C	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.268942002	3	1.00E-09	GTG	synonymous	NA	NA	NA	NA
M7	chr7	87602580	12A2p6	cell line	sgMsh2	87602580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	191	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon3:c.A37G:p.K13E,Grm5:NM_001143834:exon3:c.A37G:p.K13E"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.8259778	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	87603038	12A2p6	cell line	sgMsh2	87603038	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	203	0	0	NA	exonic	Grm5	synonymous SNV	"Grm5:NM_001081414:exon3:c.C495T:p.N165N,Grm5:NM_001143834:exon3:c.C495T:p.N165N"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999998	ACA	synonymous	NA	NA	NA	NA
M7	chr7	88130070	12A2p6	cell line	sgMsh2	88130070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	38	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon10:c.A2717G:p.K906R,Grm5:NM_001143834:exon11:c.A2813G:p.K938R"	7qD3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9773057	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	90427491	12A2p6	cell line	sgMsh2	90427491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	76	3	1	0.333333333	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.A908G:p.K303R	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9905328	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	90427503	12A2p6	cell line	sgMsh2	90427503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	74	2	0	0	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.T920A:p.L307Q	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9514026	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	92624080	12A2p6	cell line	sgMsh2	92624080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	75	6	3	0.5	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon4:c.T338C:p.I113T	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	96843077	12A2p6	cell line	sgMsh2	96843077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	120	15	7	0.466666667	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon20:c.A3220G:p.S1074G,Tenm4:NM_011858:exon20:c.A3109G:p.S1037G,Tenm4:NM_001310762:exon21:c.A3217G:p.S1073G"	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.978635	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	96895308	12A2p6	cell line	sgMsh2	96895308	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	261	37	7	0.189189189	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon31:c.G6641A:p.R2214K,Tenm4:NM_001310762:exon31:c.G6617A:p.R2206K,Tenm4:NM_011858:exon31:c.G6530A:p.R2177K"	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.761242617	2	0.882203	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	97499576	12A2p6	cell line	sgMsh2	97499576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	237	71	11	0.154929577	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon6:c.T661C:p.L221L,Ints4:NM_027256:exon6:c.T688C:p.L230L"	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.733892583	2	0.9733331	GTT	synonymous	NA	NA	NA	NA
M7	chr7	98352168	12A2p6	cell line	sgMsh2	98352168	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	57	5	1	0.2	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.C955T:p.R319C,Tsku:NM_001168539:exon2:c.C955T:p.R319C,Tsku:NM_001168540:exon3:c.C955T:p.R319C,Tsku:NM_001168541:exon4:c.C955T:p.R319C"	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9921594	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	98477241	12A2p6	cell line	sgMsh2	98477241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	89	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon19:c.C3303A:p.R1101R	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	GCC	synonymous	NA	NA	NA	NA
M7	chr7	98498629	12A2p6	cell line	sgMsh2	98498629	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	59	0	0	NA	exonic	Lrrc32	synonymous SNV	Lrrc32:NM_001113379:exon3:c.C615T:p.L205L	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9929945	TCT	synonymous	NA	NA	NA	NA
M7	chr7	98939933	12A2p6	cell line	sgMsh2	98939933	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	152	49	11	0.224489796	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon13:c.G1260T:p.Q420H	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.957251195	1	0.9997537	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr7	99438340	12A2p6	cell line	sgMsh2	99438340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	60	7	2	0.285714286	exonic	Gdpd5	synonymous SNV	"Gdpd5:NM_001362167:exon5:c.T210C:p.D70D,Gdpd5:NM_201352:exon5:c.T210C:p.D70D,Gdpd5:NM_001362166:exon6:c.T210C:p.D70D"	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9933783	ATG	synonymous	NA	NA	NA	NA
M7	chr7	99470339	12A2p6	cell line	sgMsh2	99470339	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	71	0	0	NA	exonic	Klhl35	nonsynonymous SNV	Klhl35:NM_028145:exon3:c.T1030A:p.Y344N	7qE1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9964413	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	99839870	12A2p6	cell line	sgMsh2	99839870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	100	441	75	0.170068027	exonic	Spcs2	nonsynonymous SNV	Spcs2:NM_025668:exon5:c.T508C:p.Y170H	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993113	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	100029349	12A2p6	cell line	sgMsh2	100029349	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	45	0	0	NA	exonic	Chrdl2	nonsynonymous SNV	"Chrdl2:NM_001291320:exon9:c.A1127C:p.K376T,Chrdl2:NM_133709:exon9:c.A1106C:p.K369T"	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	100881196	12A2p6	cell line	sgMsh2	100881196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	42	63	17	0.26984127	exonic	Arhgef17	nonsynonymous SNV	Arhgef17:NM_001081116:exon11:c.A4382C:p.E1461A	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.806826007	1	0.8306804	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	101246329	12A2p6	cell line	sgMsh2	101246329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	119	0	0	NA	exonic	Fchsd2	nonsynonymous SNV	Fchsd2:NM_199012:exon11:c.A952G:p.I318V	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.6809767	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	101386855	12A2p6	cell line	sgMsh2	101386855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	92	32	6	0.1875	exonic	Arap1	nonsynonymous SNV	"Arap1:NM_027180:exon4:c.A350G:p.N117S,Arap1:NM_001040112:exon5:c.A350G:p.N117S,Arap1:NM_001040111:exon8:c.A1094G:p.N365S"	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	101915665	12A2p6	cell line	sgMsh2	101915665	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	92	10	2	0.2	exonic	Lrrc51	nonsynonymous SNV	"Lrrc51:NM_001162973:exon3:c.A185T:p.N62I,Lrrc51:NM_001162974:exon3:c.A185T:p.N62I,Lrrc51:NM_001357584:exon3:c.A185T:p.N62I,Lrrc51:NM_027053:exon4:c.A185T:p.N62I"	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.752125939	1	0.5206759	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	102012774	12A2p6	cell line	sgMsh2	102012774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	62	91	15	0.164835165	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon21:c.G5671A:p.D1891N	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9940844	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr7	102240087	12A2p6	cell line	sgMsh2	102240087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	92	132	29	0.21969697	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.T158A:p.L53Q	7qE2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	102494453	12A2p6	cell line	sgMsh2	102494453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	348	0	0	NA	exonic	Olfr545	synonymous SNV	Olfr545:NM_146840:exon1:c.C321T:p.C107C	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.53E-09	TGC	synonymous	NA	NA	NA	NA
M7	chr7	102605185	12A2p6	cell line	sgMsh2	102605185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	144	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T830C:p.L277P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9755316	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	102640431	12A2p6	cell line	sgMsh2	102640431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	145	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.T184C:p.Y62H	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	102658984	12A2p6	cell line	sgMsh2	102658984	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	200	0	0	NA	exonic	Olfr555	nonsynonymous SNV	Olfr555:NM_147103:exon1:c.G162T:p.Q54H	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999976	AGA	nonsynonymous	AGAGC	10	AGAGCAGAGC	NA
M7	chr7	102774994	12A2p6	cell line	sgMsh2	102774994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	179	0	0	NA	exonic	Olfr561	nonsynonymous SNV	Olfr561:NM_147092:exon1:c.G469A:p.A157T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999922	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	102804243	12A2p6	cell line	sgMsh2	102804243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	322	0	0	NA	exonic	Olfr564	nonsynonymous SNV	Olfr564:NM_146359:exon1:c.T764C:p.I255T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9999895	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	102965961	12A2p6	cell line	sgMsh2	102965961	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	179	0	0	NA	exonic	Olfr576	nonsynonymous SNV	Olfr576:NM_001001805:exon1:c.A860T:p.N287I	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.9395259	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	103219940	12A2p6	cell line	sgMsh2	103219940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	178	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G221A:p.G74D	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9953953	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	103250769	12A2p6	cell line	sgMsh2	103250769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	446	0	0	NA	exonic	Usp17ld	nonsynonymous SNV	Usp17ld:NM_001001559:exon2:c.T955C:p.W319R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	103328734	12A2p6	cell line	sgMsh2	103328734	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	384	0	0	NA	exonic	Olfr598	nonsynonymous SNV	Olfr598:NM_001011793:exon1:c.A247G:p.I83V	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9999926	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	103338948	12A2p6	cell line	sgMsh2	103338948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	85	0	0	NA	exonic	Olfr599	nonsynonymous SNV	Olfr599:NM_146731:exon1:c.A893G:p.K298R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.60625909	2	0.9697529	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	103383210	12A2p6	cell line	sgMsh2	103383210	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	181	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.G791T:p.R264M	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999993	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	103460363	12A2p6	cell line	sgMsh2	103460363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	177	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.C844T:p.L282L	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999913	AGG	synonymous	NA	NA	NA	NA
M7	chr7	103892925	12A2p6	cell line	sgMsh2	103892925	A	G	SNV	Mutect2;Vardict	2	0.105	213	0	0	NA	exonic	Olfr64	nonsynonymous SNV	Olfr64:NM_013617:exon1:c.T809C:p.V270A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.478625597	2	5.83E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	104069002	12A2p6	cell line	sgMsh2	104069002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	66	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.G28T:p.G10W	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.820501024	1	0.8638851	CCA	nonsynonymous	NA	NA	NA	NA
M7	chr7	104106430	12A2p6	cell line	sgMsh2	104106430	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	114	0	0	NA	exonic	Olfr646	synonymous SNV	Olfr646:NM_147056:exon1:c.T150C:p.S50S	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	GTG	synonymous	NA	NA	NA	NA
M7	chr7	104106545	12A2p6	cell line	sgMsh2	104106545	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	160	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.A265T:p.I89F	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999771	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104107148	12A2p6	cell line	sgMsh2	104107148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	141	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.T868C:p.Y290H	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9973299	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	104128695	12A2p6	cell line	sgMsh2	104128695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	114	0	0	NA	exonic	Ubqln5	synonymous SNV	Ubqln5:NM_027634:exon1:c.T921C:p.P307P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	CAG	synonymous	NA	NA	NA	NA
M7	chr7	104129212	12A2p6	cell line	sgMsh2	104129212	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	50	0	0	NA	exonic	Ubqln5	nonsynonymous SNV	Ubqln5:NM_027634:exon1:c.A404C:p.D135A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9883813	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	104141090	12A2p6	cell line	sgMsh2	104141090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	67	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.T1861C:p.F621L,Ubqln3:NM_198623:exon2:c.T1792C:p.F598L"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9852213	AAG	nonsynonymous	G	5	GGGGG	NA
M7	chr7	104265854	12A2p6	cell line	sgMsh2	104265854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	185	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon8:c.A1007G:p.N336S	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999945	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104336164	12A2p6	cell line	sgMsh2	104336164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	301	1	1	1	exonic	Trim34b	synonymous SNV	Trim34b:NM_001243916:exon7:c.T1005C:p.N335N	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.09108945	ATG	synonymous	NA	NA	NA	NA
M7	chr7	104473250	12A2p6	cell line	sgMsh2	104473250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	182	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon5:c.T353C:p.I118T,Trim30d:NM_199146:exon6:c.T803C:p.I268T"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104553572	12A2p6	cell line	sgMsh2	104553572	T	C	SNV	Mutect2;Vardict	2	0.032	168	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.T652C:p.Y218H	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.145866849	3	1.00E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	104588061	12A2p6	cell line	sgMsh2	104588061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	134	0	0	NA	exonic	Olfr654	nonsynonymous SNV	Olfr654:NM_146379:exon1:c.T307G:p.F103V	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9972388	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104596668	12A2p6	cell line	sgMsh2	104596668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	120	0	0	NA	exonic	Olfr655	nonsynonymous SNV	Olfr655:NM_146820:exon1:c.G512T:p.R171M	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997784	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104596837	12A2p6	cell line	sgMsh2	104596837	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	149	0	0	NA	exonic	Olfr655	nonsynonymous SNV	Olfr655:NM_146820:exon1:c.C343T:p.L115F	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.255266985	3	0.9999994	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr7	104618461	12A2p6	cell line	sgMsh2	104618461	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	162	0	0	NA	exonic	Olfr656	frameshift deletion	Olfr656:NM_147075:exon1:c.805delT:p.F270Sfs*60	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.825059363	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr7	104635816	12A2p6	cell line	sgMsh2	104635816	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	261	0	0	NA	exonic	Olfr657	frameshift deletion	Olfr657:NM_146312:exon1:c.141delA:p.N48Tfs*13	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr7	104688591	12A2p6	cell line	sgMsh2	104688591	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	209	0	0	NA	exonic	Olfr661	nonsynonymous SNV	Olfr661:NM_146748:exon1:c.G575T:p.S192I	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.159541866	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	104860793	12A2p6	cell line	sgMsh2	104860793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	404	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon3:c.T604C:p.S202P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9999999	CTC	nonsynonymous	TCAGC	14	TCAGCTCAGCTCAG	NA
M7	chr7	104960477	12A2p6	cell line	sgMsh2	104960477	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	175	0	0	NA	exonic	Olfr670	nonsynonymous SNV	Olfr670:NM_207146:exon1:c.G254A:p.G85D	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.920784483	1	0.9994104	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr7	105056814	12A2p6	cell line	sgMsh2	105056814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	188	0	0	NA	exonic	Olfr677	nonsynonymous SNV	Olfr677:NM_146358:exon1:c.A567C:p.L189F	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9962707	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	105329402	12A2p6	cell line	sgMsh2	105329402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	135	0	0	NA	exonic	Olfr690	synonymous SNV	Olfr690:NM_020290:exon1:c.T789C:p.T263T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9668727	GAG	synonymous	NA	NA	NA	NA
M7	chr7	105337497	12A2p6	cell line	sgMsh2	105337497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	122	0	0	NA	exonic	Olfr691	nonsynonymous SNV	Olfr691:NM_147061:exon1:c.T218C:p.I73T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.733892583	2	0.7449862	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	105404735	12A2p6	cell line	sgMsh2	105404735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	97	0	0	NA	exonic	Cnga4	nonsynonymous SNV	Cnga4:NM_001033317:exon1:c.C44T:p.P15L	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9991836	CCA	nonsynonymous	C	5	CCCCC	NA
M7	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	82	43	0	0	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr7	105652070	12A2p6	cell line	sgMsh2	105652070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	117	4	1	0.25	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon3:c.T633C:p.P211P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.6490394	CTT	synonymous	NA	NA	NA	NA
M7	chr7	105721722	12A2p6	cell line	sgMsh2	105721722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	73	1	0	0	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon44:c.A14205G:p.T4735T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9968218	CAT	synonymous	NA	NA	NA	NA
M7	chr7	105742238	12A2p6	cell line	sgMsh2	105742238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	138	265	54	0.203773585	exonic	Ilk	synonymous SNV	"Ilk:NM_001161724:exon12:c.A1110G:p.R370R,Ilk:NM_010562:exon12:c.A1110G:p.R370R"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	GAC	synonymous	NA	NA	NA	NA
M7	chr7	106601234	12A2p6	cell line	sgMsh2	106601234	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	140	0	0	NA	exonic	Gm1966	frameshift deletion	"Gm1966:NM_001277179:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277180:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277181:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277182:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277183:exon6:c.2802delA:p.K934Nfs*4"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7	chr7	106601690	12A2p6	cell line	sgMsh2	106601690	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	192	0	0	NA	exonic	Gm1966	synonymous SNV	"Gm1966:NM_001277179:exon3:c.A2346G:p.Q782Q,Gm1966:NM_001277180:exon3:c.A2346G:p.Q782Q,Gm1966:NM_001277181:exon4:c.A2346G:p.Q782Q,Gm1966:NM_001277182:exon4:c.A2346G:p.Q782Q,Gm1966:NM_001277183:exon6:c.A2346G:p.Q782Q"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.177775222	3	1.00E-09	GTT	synonymous	TGT	9	TGTTGTTGT	NA
M7	chr7	106677976	12A2p6	cell line	sgMsh2	106677976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	203	0	0	NA	exonic	Olfr693	nonsynonymous SNV	Olfr693:NM_146453:exon1:c.A509G:p.K170R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9998979	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	106689333	12A2p6	cell line	sgMsh2	106689333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	361	0	0	NA	exonic	Olfr694	nonsynonymous SNV	Olfr694:NM_146452:exon1:c.A397G:p.T133A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	1.26E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	106790217	12A2p6	cell line	sgMsh2	106790217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	153	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.A783G:p.L261L	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999659	GTA	synonymous	NA	NA	NA	NA
M7	chr7	106806104	12A2p6	cell line	sgMsh2	106806104	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	203	0	0	NA	exonic	Olfr700	synonymous SNV	Olfr700:NM_146600:exon1:c.C357A:p.A119A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.14130851	3	1	AGG	synonymous	NA	NA	NA	NA
M7	chr7	106886682	12A2p6	cell line	sgMsh2	106886682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	205	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.T134C:p.L45P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999982	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	107186654	12A2p6	cell line	sgMsh2	107186654	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	192	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon5:c.G1936A:p.G646R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999963	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	107902860	12A2p6	cell line	sgMsh2	107902860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	285	0	0	NA	exonic	Olfr472	nonsynonymous SNV	Olfr472:NM_146774:exon1:c.T142G:p.L48V	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	2.01E-08	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	108081365	12A2p6	cell line	sgMsh2	108081365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	110	0	0	NA	exonic	Olfr481	synonymous SNV	Olfr481:NM_146925:exon1:c.C570T:p.G190G	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9989948	GCC	synonymous	NA	NA	NA	NA
M7	chr7	108094849	12A2p6	cell line	sgMsh2	108094849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	312	0	0	NA	exonic	Olfr482	synonymous SNV	Olfr482:NM_146733:exon1:c.C720T:p.A240A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	5.12E-09	AGG	synonymous	NA	NA	NA	NA
M7	chr7	108159177	12A2p6	cell line	sgMsh2	108159177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	265	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T695C:p.L232P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	108286369	12A2p6	cell line	sgMsh2	108286369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	234	0	0	NA	exonic	Olfr490	synonymous SNV	Olfr490:NM_146498:exon1:c.T756C:p.T252T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9873072	AAG	synonymous	NA	NA	NA	NA
M7	chr7	108368304	12A2p6	cell line	sgMsh2	108368304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	388	0	0	NA	exonic	Olfr494	synonymous SNV	Olfr494:NM_146737:exon1:c.A813C:p.T271T	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9992598	CAG	synonymous	NA	NA	NA	NA
M7	chr7	108465962	12A2p6	cell line	sgMsh2	108465962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	253	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A637G:p.T213A	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	108466294	12A2p6	cell line	sgMsh2	108466294	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	191	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.C969A:p.H323Q	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9902579	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr7	108523007	12A2p6	cell line	sgMsh2	108523007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	136	0	0	NA	exonic	Olfr502	synonymous SNV	Olfr502:NM_146739:exon1:c.T942C:p.S314S	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	AAG	synonymous	NA	NA	NA	NA
M7	chr7	108523091	12A2p6	cell line	sgMsh2	108523091	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	326	0	0	NA	exonic	Olfr502	frameshift deletion	Olfr502:NM_146739:exon1:c.858delC:p.M287Cfs*1	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7	chr7	108565457	12A2p6	cell line	sgMsh2	108565457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	227	0	0	NA	exonic	Olfr504	nonsynonymous SNV	Olfr504:NM_001011858:exon1:c.T337C:p.F113L	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	108668261	12A2p6	cell line	sgMsh2	108668261	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	338	0	0	NA	exonic	Olfr510	nonsynonymous SNV	Olfr510:NM_146311:exon2:c.A844G:p.M282V	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	CAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M7	chr7	108881560	12A2p6	cell line	sgMsh2	108881560	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	102	0	0	NA	exonic	Olfr518	synonymous SNV	Olfr518:NM_146306:exon1:c.C45A:p.G15G	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993851	AGC	synonymous	NA	NA	NA	NA
M7	chr7	108894023	12A2p6	cell line	sgMsh2	108894023	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	378	0	0	NA	exonic	Olfr519	nonsynonymous SNV	Olfr519:NM_207160:exon1:c.A383G:p.H128R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	108941463	12A2p6	cell line	sgMsh2	108941463	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	103	716	4	0.005586592	exonic	Eif3f	synonymous SNV	Eif3f:NM_025344:exon8:c.C1011T:p.D337D	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999419	ACC	synonymous	NA	NA	NA	NA
M7	chr7	109026683	12A2p6	cell line	sgMsh2	109026683	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	70	0	0	NA	exonic	Tub	stopgain	Tub:NM_021885:exon7:c.C778T:p.Q260X	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9825825	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr7	109519937	12A2p6	cell line	sgMsh2	109519937	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	154	23	1	0.043478261	exonic	Rpl27a	synonymous SNV	Rpl27a:NM_011975:exon3:c.A87G:p.P29P	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.196008578	3	1.14E-09	CAG	synonymous	NA	NA	NA	NA
M7	chr7	109918721	12A2p6	cell line	sgMsh2	109918721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	164	94	22	0.234042553	exonic	Dennd5a	synonymous SNV	"Dennd5a:NM_001311139:exon7:c.T1707C:p.D569D,Dennd5a:NM_021494:exon8:c.T1779C:p.D593D"	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999817	CAT	synonymous	ATC	14	ATCATCATCATCAT	NA
M7	chr7	110267800	12A2p6	cell line	sgMsh2	110267800	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	119	37	5	0.135135135	exonic	Swap70	nonsynonymous SNV	Swap70:NM_009302:exon6:c.G808A:p.G270R	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9928164	TGG	nonsynonymous	GAAA	8	GAAAGAAA	NA
M7	chr7	110489358	12A2p6	cell line	sgMsh2	110489358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	69	48	7	0.145833333	exonic	Sbf2	nonsynonymous SNV	Sbf2:NM_177324:exon3:c.T145C:p.F49L	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9960154	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	110821282	12A2p6	cell line	sgMsh2	110821282	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	226	17	7	0.411764706	exonic	Rnf141	nonsynonymous SNV	Rnf141:NM_025999:exon5:c.A514T:p.S172C	7qE3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	112876204	12A2p6	cell line	sgMsh2	112876204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	127	72	14	0.194444444	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon9:c.T829C:p.F277L,Tead1:NM_009346:exon10:c.T841C:p.F281L,Tead1:NM_001166584:exon11:c.T904C:p.F302L"	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.999851	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	114526788	12A2p6	cell line	sgMsh2	114526788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	180	14	4	0.285714286	exonic	Pde3b	synonymous SNV	Pde3b:NM_011055:exon12:c.T2256C:p.D752D	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9813419	ATG	synonymous	NA	NA	NA	NA
M7	chr7	117634620	12A2p6	cell line	sgMsh2	117634620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	61	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon7:c.T1373C:p.L458P	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.7161051	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	118433917	12A2p6	cell line	sgMsh2	118433917	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	45	20	7	0.35	exonic	Syt17	synonymous SNV	"Syt17:NM_001362179:exon5:c.G684C:p.V228V,Syt17:NM_001362180:exon5:c.G684C:p.V228V,Syt17:NM_138649:exon5:c.G855C:p.V285V"	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	TCA	synonymous	NA	NA	NA	NA
M7	chr7	118490439	12A2p6	cell line	sgMsh2	118490439	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	128	30	0.234375	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.G896T:p.G299V	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.973208	GCC	nonsynonymous	GCA	8	GCAGCAGC	NA
M7	chr7	118552817	12A2p6	cell line	sgMsh2	118552817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	79	6	0	0	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon7:c.A880G:p.I294V	7qF1	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9976439	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr7	118724564	12A2p6	cell line	sgMsh2	118724564	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	92	22	12	0.545454545	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon6:c.G2022A:p.R674R,Ccp110:NM_001360794:exon6:c.G2025A:p.R675R,Ccp110:NM_182995:exon6:c.G2025A:p.R675R"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	GGG	synonymous	GGAGCA	23	GAGCAGGAGAGGGAGCAGGAGCA	NA
M7	chr7	118760190	12A2p6	cell line	sgMsh2	118760190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	233	125	24	0.192	exonic	Vps35l	synonymous SNV	Vps35l:NM_027815:exon8:c.T753C:p.V251V	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9963101	TTA	synonymous	NA	NA	NA	NA
M7	chr7	118976568	12A2p6	cell line	sgMsh2	118976568	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	128	64	1	0.015625	exonic	Gprc5b	nonsynonymous SNV	"Gprc5b:NM_001195774:exon3:c.T1133C:p.F378S,Gprc5b:NM_022420:exon3:c.T1133C:p.F378S"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.287175358	3	0.9998377	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	119454281	12A2p6	cell line	sgMsh2	119454281	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	106	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon3:c.G447T:p.K149N	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9975142	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	119498011	12A2p6	cell line	sgMsh2	119498011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	132	0	0	NA	exonic	Pdilt	nonsynonymous SNV	Pdilt:NM_027943:exon7:c.T856C:p.Y286H	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	119582766	12A2p6	cell line	sgMsh2	119582766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	131	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon9:c.T1237C:p.F413L,Acsm2:NM_001177978:exon9:c.T1162C:p.F388L,Acsm2:NM_146197:exon9:c.T1162C:p.F388L"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9984985	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	119785795	12A2p6	cell line	sgMsh2	119785795	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	207	52	5	0.096153846	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon9:c.C798A:p.A266A,Eri2:NM_027698:exon9:c.C1482A:p.A494A"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9999496	AGG	synonymous	NA	NA	NA	NA
M7	chr7	119801262	12A2p6	cell line	sgMsh2	119801262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	61	7	1	0.142857143	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A269G:p.N90S,Rexo5:NM_001370778:exon4:c.A269G:p.N90S"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8051132	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	119801285	12A2p6	cell line	sgMsh2	119801285	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	68	7	2	0.285714286	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A292C:p.K98Q,Rexo5:NM_001370778:exon4:c.A292C:p.K98Q"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.5628932	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr7	119805210	12A2p6	cell line	sgMsh2	119805210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	190	10	2	0.2	exonic	Rexo5	synonymous SNV	"Rexo5:NM_001004187:exon5:c.T528C:p.Y176Y,Rexo5:NM_001370778:exon6:c.T528C:p.Y176Y"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9999005	ATG	synonymous	NA	NA	NA	NA
M7	chr7	119928814	12A2p6	cell line	sgMsh2	119928814	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	134	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon58:c.T11411C:p.L3804P	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	120021009	12A2p6	cell line	sgMsh2	120021009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	144	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon33:c.T4663C:p.Y1555H	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.551559022	2	0.9999103	TAG	nonsynonymous	CATAGT	12	CATAGTCATAGT	NA
M7	chr7	120477333	12A2p6	cell line	sgMsh2	120477333	A	G	SNV	Mutect2;Vardict	2	0.045	97	0	0	NA	exonic	Abca16	synonymous SNV	"Abca16:NM_001278943:exon10:c.A906G:p.K302K,Abca16:NM_001278944:exon13:c.A645G:p.K215K"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	0.9999982	AAC	synonymous	NA	NA	NA	NA
M7	chr7	121648566	12A2p6	cell line	sgMsh2	121648566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	94	26	4	0.153846154	exonic	Usp31	nonsynonymous SNV	Usp31:NM_001033173:exon16:c.A3653G:p.K1218R	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990323	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	122171703	12A2p6	cell line	sgMsh2	122171703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Ern2	synonymous SNV	"Ern2:NM_001316689:exon18:c.A2166G:p.S722S,Ern2:NM_012016:exon18:c.A2169G:p.S723S"	7qF2	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	CTG	synonymous	NA	NA	NA	NA
M7	chr7	123175446	12A2p6	cell line	sgMsh2	123175446	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	134	75	15	0.2	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon9:c.G3504A:p.R1168R	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	GGA	synonymous	NA	NA	NA	NA
M7	chr7	123176843	12A2p6	cell line	sgMsh2	123176843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	140	115	27	0.234782609	exonic	Tnrc6a	nonsynonymous SNV	Tnrc6a:NM_144925:exon10:c.A3536G:p.N1179S	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.9805551	AAC	nonsynonymous	AAAC	10	AAACAAACAA	NA
M7	chr7	125471241	12A2p6	cell line	sgMsh2	125471241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	132	295	60	0.203389831	exonic	Nsmce1	nonsynonymous SNV	"Nsmce1:NM_001360659:exon5:c.T355C:p.S119P,Nsmce1:NM_001377010:exon5:c.T355C:p.S119P,Nsmce1:NM_001377011:exon5:c.T355C:p.S119P,Nsmce1:NM_001377012:exon5:c.T355C:p.S119P,Nsmce1:NM_026330:exon5:c.T355C:p.S119P"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	125663465	12A2p6	cell line	sgMsh2	125663465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	92	90	26	0.288888889	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon20:c.A3221G:p.E1074G	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr7	125669638	12A2p6	cell line	sgMsh2	125669638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	206	159	24	0.150943396	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon14:c.A2295G:p.K765K	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999983	TTT	synonymous	T	5	TTTTT	NA
M7	chr7	125681182	12A2p6	cell line	sgMsh2	125681182	T	C	SNV	Mutect2;Vardict	2	0.044	95	103	0	0	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon7:c.A1055G:p.D352G	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.200566917	3	0.9999984	ATC	nonsynonymous	TCA	17	TCATCGTCATCATCATC	NA
M7	chr7	126367949	12A2p6	cell line	sgMsh2	126367949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	124	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon8:c.T432G:p.S144R	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9765963	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	126488696	12A2p6	cell line	sgMsh2	126488696	T	C	SNV	Mutect2;Vardict	2	0.033	222	48	0	0	exonic	Tufm	nonsynonymous SNV	"Tufm:NM_001163713:exon4:c.T452C:p.V151A,Tufm:NM_172745:exon4:c.T452C:p.V151A"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.150425188	3	1	GTG	nonsynonymous	TGG	9	TGGTGGTGG	NA
M7	chr7	126547648	12A2p6	cell line	sgMsh2	126547648	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	119	491	113	0.230142566	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon18:c.G2360T:p.R787M	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9997655	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	126572480	12A2p6	cell line	sgMsh2	126572480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	92	47	11	0.234042553	exonic	Cln3	synonymous SNV	"Cln3:NM_001329789:exon13:c.T1116C:p.I372I,Cln3:NM_009907:exon14:c.T1188C:p.I396I,Cln3:NM_001146311:exon17:c.T1188C:p.I396I"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	CAA	synonymous	NA	NA	NA	NA
M7	chr7	126781902	12A2p6	cell line	sgMsh2	126781902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	32	2	0	0	exonic	Tbx6	nonsynonymous SNV	Tbx6:NM_011538:exon2:c.A308G:p.E103G	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	2	1	1	0.9683943	GAA	nonsynonymous	GGAA	8	GGAAGGAA	NA
M7	chr7	126786500	12A2p6	cell line	sgMsh2	126786500	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	87	390	76	0.194871795	exonic	Ppp4c	synonymous SNV	"Ppp4c:NM_001360464:exon7:c.C666T:p.V222V,Ppp4c:NM_019674:exon8:c.C666T:p.V222V"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	CGA	synonymous	NA	NA	NA	NA
M7	chr7	126875927	12A2p6	cell line	sgMsh2	126875927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	122	41	7	0.170731707	exonic	Taok2	nonsynonymous SNV	"Taok2:NM_001163774:exon10:c.T757C:p.Y253H,Taok2:NM_001163775:exon10:c.T757C:p.Y253H"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998022	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	127050302	12A2p6	cell line	sgMsh2	127050302	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	120	0	0	NA	exonic	Zg16	nonsynonymous SNV	Zg16:NM_026918:exon4:c.C486G:p.S162R	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.3737838	2	6.93E-07	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr7	127531863	12A2p6	cell line	sgMsh2	127531863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	106	93	8	0.086021505	exonic	Srcap	synonymous SNV	Srcap:NM_001304266:exon15:c.A2310G:p.R770R	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.597142412	2	0.9933543	GAT	synonymous	NA	NA	NA	NA
M7	chr7	127596214	12A2p6	cell line	sgMsh2	127596214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	51	64	12	0.1875	exonic	Rnf40	nonsynonymous SNV	"Rnf40:NM_001360883:exon12:c.A712G:p.T238A,Rnf40:NM_172281:exon13:c.A1711G:p.T571A"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.537884005	2	0.9216482	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	127879144	12A2p6	cell line	sgMsh2	127879144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	91	42	11	0.261904762	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A492G:p.Q164Q	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.998853	AAG	synonymous	NA	NA	NA	NA
M7	chr7	127889628	12A2p6	cell line	sgMsh2	127889628	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	114	2	0	0	exonic	Prss53	synonymous SNV	Prss53:NM_001081268:exon3:c.T93A:p.R31R	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.861526075	1	0.9678978	CAC	synonymous	AGGGCC	13	AGGGCCAGGGCCA	NA
M7	chr7	128129629	12A2p6	cell line	sgMsh2	128129629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	113	0	0	NA	exonic	Itgax	nonsynonymous SNV	"Itgax:NM_001363984:exon1:c.A10G:p.T4A,Itgax:NM_001363985:exon1:c.A10G:p.T4A,Itgax:NM_021334:exon1:c.A10G:p.T4A"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.715659227	2	0.8151281	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr7	128136127	12A2p6	cell line	sgMsh2	128136127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	81	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon13:c.T1453C:p.Y485H	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	128545788	12A2p6	cell line	sgMsh2	128545788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	70	87	14	0.16091954	exonic	Bag3	nonsynonymous SNV	Bag3:NM_013863:exon4:c.A1126G:p.I376V	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.875201093	1	0.952339	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	129629949	12A2p6	cell line	sgMsh2	129629949	-	TC	Insertion	Strelka2;Vardict	2	0.193	114	24	0	0	exonic	Wdr11	frameshift insertion	Wdr11:NM_172255:exon22:c.2716_2717insTC:p.L909Sfs*40	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.879759432	NA	NA	CTT	frameshift	TC	9	TCTCTCTCT	2
M7	chr7	131318094	12A2p6	cell line	sgMsh2	131318094	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	66	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon3:c.A292G:p.T98A	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.638167463	2	0.8469121	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	131387797	12A2p6	cell line	sgMsh2	131387797	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	120	17	0	0	exonic	Pstk	nonsynonymous SNV	Pstk:NM_001039534:exon6:c.T1060C:p.Y354H	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.173216883	3	3.38E-09	GTA	nonsynonymous	T	5	TTTTT	NA
M7	chr7	132597746	12A2p6	cell line	sgMsh2	132597746	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	18	0	0	NA	exonic	Nkx1-2	synonymous SNV	Nkx1-2:NM_009123:exon2:c.T285G:p.A95A	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9326447	CAG	synonymous	NA	NA	NA	NA
M7	chr7	132599443	12A2p6	cell line	sgMsh2	132599443	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	100	0	0	NA	exonic	Nkx1-2	synonymous SNV	Nkx1-2:NM_009123:exon1:c.G84A:p.P28P	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	0.9999988	GCG	synonymous	NA	NA	NA	NA
M7	chr7	133721362	12A2p6	cell line	sgMsh2	133721362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	107	213	36	0.169014085	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon11:c.A1702G:p.N568D,Dhx32:NM_001286030:exon12:c.A2122G:p.N708D,Dhx32:NM_001286031:exon12:c.A2122G:p.N708D,Dhx32:NM_001357685:exon12:c.A2077G:p.N693D,Dhx32:NM_133941:exon12:c.A2122G:p.N708D"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9995369	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	133748902	12A2p6	cell line	sgMsh2	133748902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	154	189	42	0.222222222	exonic	Dhx32	synonymous SNV	"Dhx32:NM_001286032:exon2:c.G18A:p.G6G,Dhx32:NM_001286030:exon3:c.G438A:p.G146G,Dhx32:NM_001286031:exon3:c.G438A:p.G146G,Dhx32:NM_001357685:exon3:c.G393A:p.G131G,Dhx32:NM_133941:exon3:c.G438A:p.G146G"	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.999879	GCC	synonymous	NA	NA	NA	NA
M7	chr7	135697296	12A2p6	cell line	sgMsh2	135697296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	429	173	22	0.12716763	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.T6008C:p.M2003T	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.674634175	2	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr7	135698397	12A2p6	cell line	sgMsh2	135698397	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	207	192	2	0.010416667	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A4907G:p.N1636S	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.113958476	3	1	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr7	135699991	12A2p6	cell line	sgMsh2	135699991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	146	32	0.219178082	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A3313G:p.N1105D	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999948	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr7	135700639	12A2p6	cell line	sgMsh2	135700639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	194	156	40	0.256410256	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A2665G:p.R889G	7qF3	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999967	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	139511443	12A2p6	cell line	sgMsh2	139511443	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	145	35	2	0.057142857	exonic	Inpp5a	frameshift deletion	"Inpp5a:NM_001127363:exon5:c.342delA:p.N116Tfs*65,Inpp5a:NM_001355162:exon5:c.366delA:p.N124Tfs*65,Inpp5a:NM_183144:exon5:c.342delA:p.N116Tfs*65"	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr7	139581647	12A2p6	cell line	sgMsh2	139581647	G	C	SNV	Mutect2;Vardict	2	0.065	70	0	0	NA	exonic	Nkx6-2	nonsynonymous SNV	Nkx6-2:NM_183248:exon3:c.C621G:p.H207Q	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.296292037	3	0.9791966	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr7	139654645	12A2p6	cell line	sgMsh2	139654645	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.197	73	0	0	NA	exonic	Cfap46	nonsynonymous SNV	Cfap46:NM_001302546:exon17:c.A2038T:p.I680F	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9719763	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr7	139976647	12A2p6	cell line	sgMsh2	139976647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	56	1	0	0	exonic	Spef1l	synonymous SNV	"Spef1l:NM_001033465:exon4:c.T426C:p.A142A,Spef1l:NM_001347613:exon4:c.T426C:p.A142A,Spef1l:NM_001347614:exon4:c.T426C:p.A142A,Spef1l:NM_001359836:exon4:c.T426C:p.A142A"	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.688309193	2	7.43E-08	CAG	synonymous	NA	NA	NA	NA
M7	chr7	139985890	12A2p6	cell line	sgMsh2	139985890	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	176	2	0	0	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon17:c.G1805A:p.S602N,Adam8:NM_007403:exon17:c.G1808A:p.S603N"	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.145866849	3	1.00E-09	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr7	140220515	12A2p6	cell line	sgMsh2	140220515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	92	0	0	NA	exonic	Cd163l1	nonsynonymous SNV	Cd163l1:NM_172909:exon2:c.T208G:p.C70G	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	140248153	12A2p6	cell line	sgMsh2	140248153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	140	0	0	NA	exonic	5830411N06Rik	synonymous SNV	"5830411N06Rik:NM_001128145:exon2:c.T273C:p.P91P,5830411N06Rik:NM_001128146:exon2:c.T273C:p.P91P,5830411N06Rik:NM_175533:exon2:c.T273C:p.P91P"	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	CTT	synonymous	NA	NA	NA	NA
M7	chr7	140400943	12A2p6	cell line	sgMsh2	140400943	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	247	0	0	NA	exonic	Olfr531	synonymous SNV	Olfr531:NM_146953:exon1:c.T102A:p.A34A	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999998	CAG	synonymous	NA	NA	NA	NA
M7	chr7	140691534	12A2p6	cell line	sgMsh2	140691534	G	A	SNV	Mutect2;Vardict	2	0.013	574	0	0	NA	exonic	Olfr45	nonsynonymous SNV	Olfr45:NM_146963:exon1:c.G628A:p.V210I	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.059258407	3	1	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr7	140705118	12A2p6	cell line	sgMsh2	140705118	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	522	0	0	NA	exonic	Olfr541	nonsynonymous SNV	Olfr541:NM_146962:exon1:c.C866A:p.P289H	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.113958476	3	1	CCC	nonsynonymous	C	5	CCCCC	NA
M7	chr7	140861417	12A2p6	cell line	sgMsh2	140861417	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	90	117	8	0.068376068	exonic	Ric8a	nonsynonymous SNV	Ric8a:NM_053194:exon8:c.G1329T:p.E443D	7qF4	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr7	141088650	12A2p6	cell line	sgMsh2	141088650	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.093	67	2	0	0	exonic	Pkp3	nonsynonymous SNV	"Pkp3:NM_019762:exon8:c.A1736G:p.E579G,Pkp3:NM_001162924:exon9:c.A1811G:p.E604G"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.423925529	2	0.9730828	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	141091981	12A2p6	cell line	sgMsh2	141091981	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	46	21	10	0.476190476	exonic	Sigirr	synonymous SNV	"Sigirr:NM_001355055:exon9:c.T888G:p.S296S,Sigirr:NM_023059:exon9:c.T888G:p.S296S"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9335763	CAG	synonymous	NA	NA	NA	NA
M7	chr7	141357561	12A2p6	cell line	sgMsh2	141357561	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	72	108	0	0	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon13:c.1087delA:p.S363Afs*3	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CAG	frameshift	NA	NA	NA	-1
M7	chr7	141401716	12A2p6	cell line	sgMsh2	141401716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	112	435	103	0.236781609	exonic	Taldo1	synonymous SNV	Taldo1:NM_011528:exon5:c.A597G:p.A199A	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.5878977	CAA	synonymous	NA	NA	NA	NA
M7	chr7	141442988	12A2p6	cell line	sgMsh2	141442988	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	27	3	2	0.666666667	exonic	Pidd1	nonsynonymous SNV	Pidd1:NM_022654:exon2:c.T290A:p.L97H	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr7	141470641	12A2p6	cell line	sgMsh2	141470641	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	163	423	7	0.016548463	exonic	Cd151	nonsynonymous SNV	"Cd151:NM_001111050:exon7:c.T706C:p.F236L,Cd151:NM_001111049:exon8:c.T706C:p.F236L,Cd151:NM_009842:exon8:c.T706C:p.F236L"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	141513776	12A2p6	cell line	sgMsh2	141513776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	51	46	6	0.130434783	exonic	Chid1	nonsynonymous SNV	"Chid1:NM_001369350:exon9:c.A815G:p.Y272C,Chid1:NM_001142681:exon10:c.A917G:p.Y306C,Chid1:NM_001369351:exon10:c.A917G:p.Y306C,Chid1:NM_001369352:exon10:c.A917G:p.Y306C"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.9762932	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr7	141639063	12A2p6	cell line	sgMsh2	141639063	T	G	SNV	Mutect2;MuSe;Vardict	3	0.057	1098	11	0	0	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.A5381C:p.N1794T	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.259825324	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr7	141639538	12A2p6	cell line	sgMsh2	141639538	T	C	SNV	Mutect2;Vardict	2	0.036	1311	1	0	0	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.A4906G:p.T1636A	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr7	141647548	12A2p6	cell line	sgMsh2	141647548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	106	0	0	NA	exonic	Muc6	nonsynonymous SNV	"Muc6:NM_001330001:exon19:c.A2365G:p.T789A,Muc6:NM_001368953:exon19:c.A2365G:p.T789A"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9897061	GTG	nonsynonymous	G	5	GGGGG	NA
M7	chr7	143693865	12A2p6	cell line	sgMsh2	143693865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	98	34	9	0.264705882	exonic	Osbpl5	synonymous SNV	"Osbpl5:NM_001199227:exon19:c.C2163T:p.A721A,Osbpl5:NM_001384163:exon19:c.C2199T:p.A733A,Osbpl5:NM_024289:exon19:c.C2235T:p.A745A"	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	0.843292719	1	0.9324712	GGG	synonymous	NA	NA	NA	NA
M7	chr7	143764865	12A2p6	cell line	sgMsh2	143764865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	138	0	0	NA	exonic	Mrgprg	nonsynonymous SNV	Mrgprg:NM_203492:exon2:c.T509C:p.V170A	7qF5	chr7-9985998-145323643	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999202	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	3189231	12A2p6	cell line	sgMsh2	3189231	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	104	78	12	0.153846154	exonic	Insr	nonsynonymous SNV	"Insr:NM_001330056:exon9:c.G1929C:p.K643N,Insr:NM_010568:exon9:c.G1929C:p.K643N"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.761242617	1	0.5409866	ACT	nonsynonymous	NA	NA	NA	NA
M7	chr8	3429246	12A2p6	cell line	sgMsh2	3429246	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	270	74	14	0.189189189	exonic	Arhgef18	nonsynonymous SNV	"Arhgef18:NM_133962:exon3:c.A83C:p.D28A,Arhgef18:NM_001370668:exon12:c.A1235C:p.D412A"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.802267668	1	0.7571582	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	3450826	12A2p6	cell line	sgMsh2	3450826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	65	39	5	0.128205128	exonic	Arhgef18	nonsynonymous SNV	"Arhgef18:NM_133962:exon14:c.A1787G:p.Q596R,Arhgef18:NM_001370668:exon23:c.A2939G:p.Q980R"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.8634552	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr8	3451511	12A2p6	cell line	sgMsh2	3451511	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	185	53	1	0.018867925	exonic	Arhgef18	synonymous SNV	"Arhgef18:NM_133962:exon15:c.G1896A:p.E632E,Arhgef18:NM_001370668:exon24:c.G3048A:p.E1016E"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.1868919	3	1.00E-09	AGA	synonymous	NA	NA	NA	NA
M7	chr8	3476238	12A2p6	cell line	sgMsh2	3476238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	74	0	0	NA	exonic	Tex45	synonymous SNV	Tex45:NM_029598:exon2:c.A390G:p.L130L	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	1	0.9969966	TAC	synonymous	NA	NA	NA	NA
M7	chr8	3511725	12A2p6	cell line	sgMsh2	3511725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	222	53	10	0.188679245	exonic	Mcoln1	nonsynonymous SNV	Mcoln1:NM_053177:exon11:c.T1274C:p.V425A	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.788592651	1	0.5800442	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	3604493	12A2p6	cell line	sgMsh2	3604493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	58	40	4	0.1	exonic	Camsap3	nonsynonymous SNV	"Camsap3:NM_001163749:exon11:c.T2084G:p.L695R,Camsap3:NM_027171:exon11:c.T2081G:p.L694R,Camsap3:NM_001347112:exon12:c.T2129G:p.L710R,Camsap3:NM_001347113:exon12:c.T2114G:p.L705R,Camsap3:NM_001363240:exon12:c.T2132G:p.L711R,Camsap3:NM_001363241:exon12:c.T2117G:p.L706R,Camsap3:NM_001347111:exon13:c.T2162G:p.L721R,Camsap3:NM_001363239:exon13:c.T2165G:p.L722R"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	1	0.9925886	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	4289852	12A2p6	cell line	sgMsh2	4289852	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	189	198	29	0.146464646	exonic	Elavl1	synonymous SNV	Elavl1:NM_010485:exon6:c.C729T:p.G243G	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.806826007	1	0.8224224	AGC	synonymous	NA	NA	NA	NA
M7	chr8	4749614	12A2p6	cell line	sgMsh2	4749614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	146	95	41	0.431578947	exonic	Shcbp1	synonymous SNV	Shcbp1:NM_011369:exon6:c.T861C:p.N287N	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999493	AAT	synonymous	NA	NA	NA	NA
M7	chr8	8639281	12A2p6	cell line	sgMsh2	8639281	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	114	287	20	0.069686411	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon2:c.A340G:p.T114A,Efnb2:NM_010111:exon2:c.A340G:p.T114A"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.282617019	3	0.9997046	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	9971777	12A2p6	cell line	sgMsh2	9971777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	293	32	4	0.125	exonic	Lig4	nonsynonymous SNV	"Lig4:NM_001377042:exon2:c.A2002G:p.S668G,Lig4:NM_176953:exon2:c.A2002G:p.S668G"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.711100888	2	0.9988894	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	10506541	12A2p6	cell line	sgMsh2	10506541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	98	0	0	NA	exonic	Myo16	nonsynonymous SNV	Myo16:NM_001319151:exon26:c.A3001G:p.T1001A	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.743009261	2	0.5697533	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	11223048	12A2p6	cell line	sgMsh2	11223048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	78	306	58	0.189542484	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon28:c.T2046C:p.G682G	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.79315099	1	0.7791868	CAC	synonymous	NA	NA	NA	NA
M7	chr8	11244386	12A2p6	cell line	sgMsh2	11244386	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	62	276	30	0.108695652	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon10:c.A570T:p.P190P	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.692867532	2	0.6240248	CTG	synonymous	NA	NA	NA	NA
M7	chr8	11441269	12A2p6	cell line	sgMsh2	11441269	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	56	100	32	0.32	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon40:c.A3667T:p.R1223W	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	2	1	1	0.9917055	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	11448295	12A2p6	cell line	sgMsh2	11448295	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	72	190	32	0.168421053	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon48:c.A5103C:p.Q1701H	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.875201093	1	0.9541069	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	11561490	12A2p6	cell line	sgMsh2	11561490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	121	200	41	0.205	exonic	Ing1	nonsynonymous SNV	"Ing1:NM_011919:exon2:c.T209C:p.V70A,Ing1:NM_001302451:exon3:c.T101C:p.V34A"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.660959158	2	0.9749051	GTA	nonsynonymous	ACTGC	11	ACTGCACTGCA	NA
M7	chr8	11824593	12A2p6	cell line	sgMsh2	11824593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	102	0	0	NA	exonic	Arhgef7	synonymous SNV	"Arhgef7:NM_001113518:exon18:c.T1752C:p.L584L,Arhgef7:NM_001372326:exon18:c.T1752C:p.L584L,Arhgef7:NM_001113517:exon19:c.T2223C:p.L741L,Arhgef7:NM_001372321:exon19:c.T2223C:p.L741L"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.8816093	TTT	synonymous	NA	NA	NA	NA
M7	chr8	12624927	12A2p6	cell line	sgMsh2	12624927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	116	45	8	0.177777778	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon19:c.A2192G:p.E731G	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.597142412	2	0.9964281	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	13094170	12A2p6	cell line	sgMsh2	13094170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	150	120	17	0.141666667	exonic	Pcid2	synonymous SNV	Pcid2:NM_178708:exon6:c.A336G:p.A112A	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.98004289	1	0.9999021	GTG	synonymous	NA	NA	NA	NA
M7	chr8	13308355	12A2p6	cell line	sgMsh2	13308355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	69	57	9	0.157894737	exonic	Tmco3	nonsynonymous SNV	"Tmco3:NM_001364217:exon8:c.T1232C:p.I411T,Tmco3:NM_172282:exon8:c.T1235C:p.I412T"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	1	0.9960154	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr8	13455186	12A2p6	cell line	sgMsh2	13455186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	71	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon5:c.T427C:p.Y143H,Tmem255b:NM_001143671:exon6:c.T490C:p.Y164H"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.83873438	1	0.09543479	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	13764591	12A2p6	cell line	sgMsh2	13764591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	208	300	67	0.223333333	exonic	Cdc16	nonsynonymous SNV	"Cdc16:NM_001357247:exon7:c.T374G:p.V125G,Cdc16:NM_027276:exon8:c.T656G:p.V219G"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.9968719	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	13836757	12A2p6	cell line	sgMsh2	13836757	A	G	SNV	Mutect2;Vardict	2	0.018	619	0	0	NA	exonic	AF366264	nonsynonymous SNV	AF366264:NM_153093:exon1:c.T1333C:p.C445R	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.082050102	3	1	CAC	nonsynonymous	CACTG	11	CACTGCACTGC	NA
M7	chr8	14962630	12A2p6	cell line	sgMsh2	14962630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	211	61	10	0.163934426	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon16:c.A1820G:p.N607S,Arhgef10:NM_172751:exon17:c.A1937G:p.N646S"	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	0.583467395	2	0.9999959	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	15027907	12A2p6	cell line	sgMsh2	15027907	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	1	0	0	exonic	Kbtbd11	nonsynonymous SNV	Kbtbd11:NM_029116:exon2:c.G505T:p.D169Y	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	1	1	1	0.9785304	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr8	15929088	12A2p6	cell line	sgMsh2	15929088	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	107	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon55:c.A8495T:p.Y2832F	8qA1.1	chr8-3154030-19240253	5	3	2	0.9	4.102505121	NA	2	1	1	0.9995369	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	21095121	12A2p6	cell line	sgMsh2	21095121	T	C	SNV	Mutect2;MuSe;Vardict	3	0.12	222	0	0	NA	exonic	Defa38	nonsynonymous SNV	Defa38:NM_001177482:exon2:c.A304G:p.T102A	8qA2	chr8-19241716-21696162	3	2	1	0.9	4.102505121	NA	1	0.547000683	2	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	22027710	12A2p6	cell line	sgMsh2	22027710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	151	2	0	0	exonic	Atp7b	nonsynonymous SNV	Atp7b:NM_007511:exon2:c.A1111G:p.T371A	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999618	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	22157199	12A2p6	cell line	sgMsh2	22157199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	146	11	2	0.181818182	exonic	Nek3	nonsynonymous SNV	"Nek3:NM_001162947:exon5:c.A406G:p.N136D,Nek3:NM_011848:exon6:c.A406G:p.N136D"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.88887611	1	0.9938921	TTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	115	8	0	0	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9997058	CAA	nonsynonymous	NA	NA	NA	NA
M7	chr8	22284916	12A2p6	cell line	sgMsh2	22284916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	154	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon2:c.A1G:p.M1V	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.442158885	2	0.9999442	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	22365925	12A2p6	cell line	sgMsh2	22365925	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	325	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon26:c.C1740G:p.D580E	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.5606757	2	1.23E-09	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr8	22558951	12A2p6	cell line	sgMsh2	22558951	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	146	199	30	0.150753769	exonic	Slc20a2	nonsynonymous SNV	Slc20a2:NM_011394:exon6:c.T623G:p.L208R	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.88887611	1	0.9938921	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	22561194	12A2p6	cell line	sgMsh2	22561194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	186	36	0.193548387	exonic	Slc20a2	synonymous SNV	Slc20a2:NM_011394:exon8:c.T1242C:p.S414S	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.897992788	1	0.9766207	GTG	synonymous	NA	NA	NA	NA
M7	chr8	22768462	12A2p6	cell line	sgMsh2	22768462	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	108	24	7	0.291666667	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon3:c.T80A:p.F27Y	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.551559022	2	0.9986246	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	22939941	12A2p6	cell line	sgMsh2	22939941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	199	39	7	0.179487179	exonic	Kat6a	nonsynonymous SNV	"Kat6a:NM_001364449:exon17:c.A5311G:p.S1771G,Kat6a:NM_001081149:exon18:c.A5311G:p.S1771G"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.779475973	2	0.5201133	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	23064995	12A2p6	cell line	sgMsh2	23064995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	144	15	0	0	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon2:c.A170G:p.N57S,Ank1:NM_001277280:exon2:c.A170G:p.N57S,Ank1:NM_001277281:exon2:c.A59G:p.N20S,Ank1:NM_001277284:exon2:c.A59G:p.N20S,Ank1:NM_001277286:exon2:c.A83G:p.N28S,Ank1:NM_001277289:exon2:c.A83G:p.N28S,Ank1:NM_031158:exon2:c.A83G:p.N28S"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.665517497	2	0.9886448	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	25022626	12A2p6	cell line	sgMsh2	25022626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	95	320	42	0.13125	exonic	Tm2d2	synonymous SNV	Tm2d2:NM_027194:exon4:c.A489G:p.G163G	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.738450922	2	0.5868865	GAG	synonymous	NA	NA	NA	NA
M7	chr8	25587349	12A2p6	cell line	sgMsh2	25587349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	107	7	0	0	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon5:c.A724G:p.N242D,Letm2:NM_001364070:exon5:c.A232G:p.N78D,Letm2:NM_001364071:exon5:c.A232G:p.N78D,Letm2:NM_173012:exon5:c.A724G:p.N242D"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.392017156	2	0.9212632	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	25593976	12A2p6	cell line	sgMsh2	25593976	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	309	3	0	0	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon3:c.A238T:p.T80S,Letm2:NM_173012:exon3:c.A238T:p.T80S"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.132191832	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	25666073	12A2p6	cell line	sgMsh2	25666073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	160	143	23	0.160839161	exonic	Nsd3	nonsynonymous SNV	"Nsd3:NM_001081269:exon6:c.G1655T:p.R552M,Nsd3:NM_001001735:exon7:c.G1655T:p.R552M,Nsd3:NM_001308481:exon7:c.G1655T:p.R552M,Nsd3:NM_001308482:exon7:c.G1655T:p.R552M"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7526648	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr8	25750747	12A2p6	cell line	sgMsh2	25750747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.388	135	40	3	0.075	exonic	Ddhd2	stopgain	"Ddhd2:NM_001361595:exon4:c.457delA:p.I153fs*0,Ddhd2:NM_028102:exon4:c.457delA:p.I153fs*0"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	NA	NA	ATT	nonsynonymous	T	10	TTTTTTTTTT	-1
M7	chr8	25769390	12A2p6	cell line	sgMsh2	25769390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	84	32	3	0.09375	exonic	Bag4	synonymous SNV	Bag4:NM_026121:exon4:c.A780G:p.A260A	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.683750854	2	0.8150404	GTG	synonymous	NA	NA	NA	NA
M7	chr8	25822721	12A2p6	cell line	sgMsh2	25822721	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	55	202	3	0.014851485	exonic	Ash2l	nonsynonymous SNV	"Ash2l:NM_001080793:exon12:c.T1219G:p.S407A,Ash2l:NM_001286207:exon12:c.T1219G:p.S407A,Ash2l:NM_011791:exon12:c.T1486G:p.S496A,Ash2l:NM_001359012:exon13:c.T1504G:p.S502A"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.3737838	2	0.6889099	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	26160845	12A2p6	cell line	sgMsh2	26160845	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	231	46	10	0.217391304	exonic	Thap1	nonsynonymous SNV	Thap1:NM_199042:exon2:c.A142G:p.T48A	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.319083732	3	0.9999585	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	27393303	12A2p6	cell line	sgMsh2	27393303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	177	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon3:c.T226C:p.W76R,Chrnb3:NM_173212:exon4:c.T271C:p.W91R"	8qA2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.847851058	1	0.9755124	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr8	33310740	12A2p6	cell line	sgMsh2	33310740	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	32	9	0.28125	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon16:c.A1844C:p.D615A,Wrn:NM_011721:exon16:c.A1844C:p.D615A"	8qA3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999659	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr8	33334204	12A2p6	cell line	sgMsh2	33334204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	167	21	3	0.142857143	exonic	Wrn	synonymous SNV	"Wrn:NM_001122822:exon7:c.T678C:p.D226D,Wrn:NM_011721:exon7:c.T678C:p.D226D"	8qA3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.656400819	2	0.9972323	TAT	synonymous	NA	NA	NA	NA
M7	chr8	33572354	12A2p6	cell line	sgMsh2	33572354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	169	0	0	NA	exonic	Tex15	nonsynonymous SNV	Tex15:NM_031374:exon1:c.A1811G:p.N604S	8qA3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.875201093	1	0.9930198	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	33834374	12A2p6	cell line	sgMsh2	33834374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	186	555	94	0.169369369	exonic	Rbpms	synonymous SNV	"Rbpms:NM_001042674:exon5:c.A327G:p.K109K,Rbpms:NM_001042675:exon5:c.A327G:p.K109K,Rbpms:NM_001286168:exon5:c.A327G:p.K109K,Rbpms:NM_019733:exon5:c.A327G:p.K109K"	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.647284141	2	0.9992839	GTT	synonymous	NA	NA	NA	NA
M7	chr8	34841777	12A2p6	cell line	sgMsh2	34841777	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	238	115	14	0.12173913	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon22:c.A3327C:p.K1109N	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7051679	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	36129007	12A2p6	cell line	sgMsh2	36129007	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	93	19	0	0	exonic	Prag1	synonymous SNV	Prag1:NM_172911:exon4:c.C2091T:p.H697H	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.811384346	1	0.8449889	ACC	synonymous	NA	NA	NA	NA
M7	chr8	36584814	12A2p6	cell line	sgMsh2	36584814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	190	1	0	0	exonic	Dlc1	nonsynonymous SNV	"Dlc1:NM_001194941:exon5:c.A511G:p.S171G,Dlc1:NM_015802:exon5:c.A409G:p.S137G,Dlc1:NM_001194940:exon9:c.A1762G:p.S588G"	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.902551127	1	0.9990039	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	40380689	12A2p6	cell line	sgMsh2	40380689	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	155	10	4	0.4	exonic	Micu3	nonsynonymous SNV	Micu3:NM_030110:exon13:c.G1363A:p.V455I	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.738450922	2	0.8303004	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr8	40499372	12A2p6	cell line	sgMsh2	40499372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	67	298	44	0.147651007	exonic	Cnot7	nonsynonymous SNV	"Cnot7:NM_001361938:exon4:c.T541C:p.F181L,Cnot7:NM_001271542:exon5:c.T541C:p.F181L,Cnot7:NM_001271543:exon5:c.T541C:p.F181L,Cnot7:NM_011135:exon5:c.T541C:p.F181L,Cnot7:NM_001361939:exon6:c.T580C:p.F194L"	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9955388	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr8	40912583	12A2p6	cell line	sgMsh2	40912583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	100	6	1	0.166666667	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon9:c.A1402G:p.M468V,Slc7a2:NM_007514:exon9:c.A1399G:p.M467V"	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.774917634	1	0.6511682	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	41200590	12A2p6	cell line	sgMsh2	41200590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	97	5	0	0	exonic	Fgl1	nonsynonymous SNV	Fgl1:NM_145594:exon4:c.T265C:p.Y89H	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.861526075	1	0.9584288	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr8	41312174	12A2p6	cell line	sgMsh2	41312174	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	127	123	0	0	exonic	Pcm1	nonsynonymous SNV	Pcm1:NM_023662:exon26:c.A4421G:p.N1474S	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.191450239	3	6.20E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	41343555	12A2p6	cell line	sgMsh2	41343555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	185	793	255	0.321563682	exonic	Asah1	synonymous SNV	Asah1:NM_019734:exon12:c.A1002G:p.T334T	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999945	GTG	synonymous	NA	NA	NA	NA
M7	chr8	43569504	12A2p6	cell line	sgMsh2	43569504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	405	0	0	NA	exonic	Adam26a	synonymous SNV	Adam26a:NM_010085:exon2:c.T948G:p.L316L	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	1.02E-09	AAA	synonymous	NA	NA	NA	NA
M7	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Vardict	2	0.016	653	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.072933424	3	1	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	45010006	12A2p6	cell line	sgMsh2	45010006	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	106	178	41	0.230337079	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon4:c.G3859A:p.A1287T	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9995099	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr8	45277024	12A2p6	cell line	sgMsh2	45277024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	91	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon8:c.A819C:p.E273D	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.925342822	1	0.9915109	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	45381602	12A2p6	cell line	sgMsh2	45381602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	65	0	0	NA	exonic	Fam149a	synonymous SNV	Fam149a:NM_153535:exon1:c.T159C:p.T53T	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.970926212	1	0.9912991	AAG	synonymous	NA	NA	NA	NA
M7	chr8	45772633	12A2p6	cell line	sgMsh2	45772633	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	109	154	31	0.201298701	exonic	Sorbs2	nonsynonymous SNV	"Sorbs2:NM_001310708:exon8:c.C572T:p.A191V,Sorbs2:NM_001205219:exon11:c.C779T:p.A260V,Sorbs2:NM_001310707:exon11:c.C710T:p.A237V,Sorbs2:NM_172752:exon11:c.C779T:p.A260V"	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.9600886	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr8	45943338	12A2p6	cell line	sgMsh2	45943338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	272	0	0	NA	exonic	Ccdc110	synonymous SNV	Ccdc110:NM_001033246:exon6:c.A2265T:p.I755I	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.743009261	2	0.9742338	TAC	synonymous	NA	NA	NA	NA
M7	chr8	45980631	12A2p6	cell line	sgMsh2	45980631	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	128	139	19	0.136690647	exonic	Ufsp2	nonsynonymous SNV	Ufsp2:NM_138668:exon4:c.A301C:p.T101P	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.697425871	2	0.9298298	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	46170111	12A2p6	cell line	sgMsh2	46170111	A	-	Deletion	Strelka2;Vardict	2	0.1729	266	49	0	0	exonic	Cfap97	frameshift deletion	"Cfap97:NM_001357215:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_025747:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_001357216:exon3:c.537delA:p.N182Tfs*1"	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.788136817	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M7	chr8	46531903	12A2p6	cell line	sgMsh2	46531903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	109	35	10	0.285714286	exonic	Acsl1	nonsynonymous SNV	"Acsl1:NM_001302163:exon18:c.A1757G:p.Q586R,Acsl1:NM_007981:exon18:c.A1757G:p.Q586R"	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.79315099	1	0.7546239	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	92	71	2	0.028169014	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.866084414	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M7	chr8	47822604	12A2p6	cell line	sgMsh2	47822604	T	C	SNV	Mutect2;MuSe;Vardict	3	0.232	112	0	0	NA	exonic	Cldn24	synonymous SNV	Cldn24:NM_001111318:exon1:c.T462C:p.P154P	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9996512	CTG	synonymous	NA	NA	NA	NA
M7	chr8	47858780	12A2p6	cell line	sgMsh2	47858780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	81	101	23	0.227722772	exonic	Wwc2	synonymous SNV	Wwc2:NM_133791:exon15:c.T2347C:p.L783L	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.624492446	2	0.9422479	AAC	synonymous	NA	NA	NA	NA
M7	chr8	47883537	12A2p6	cell line	sgMsh2	47883537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	84	134	26	0.194029851	exonic	Wwc2	nonsynonymous SNV	Wwc2:NM_133791:exon6:c.A689G:p.K230R	8qB1.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9982947	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	53608826	12A2p6	cell line	sgMsh2	53608826	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	119	19	3	0.157894737	exonic	Neil3	synonymous SNV	Neil3:NM_146208:exon4:c.G519A:p.Q173Q	8qB1.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9997655	CCT	synonymous	NA	NA	NA	NA
M7	chr8	54665014	12A2p6	cell line	sgMsh2	54665014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	195	0	0	NA	exonic	Wdr17	nonsynonymous SNV	"Wdr17:NM_001372376:exon8:c.A584G:p.K195R,Wdr17:NM_001372374:exon9:c.A1109G:p.K370R,Wdr17:NM_001372375:exon10:c.A872G:p.K291R,Wdr17:NM_001364215:exon11:c.A1424G:p.K475R,Wdr17:NM_001172152:exon12:c.A1646G:p.K549R,Wdr17:NM_001372373:exon12:c.A1646G:p.K549R,Wdr17:NM_001372370:exon13:c.A1718G:p.K573R,Wdr17:NM_001372371:exon13:c.A1718G:p.K573R,Wdr17:NM_001372372:exon13:c.A1718G:p.K573R,Wdr17:NM_028220:exon13:c.A1667G:p.K556R"	8qB1.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.569792378	2	0.9999946	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	55871464	12A2p6	cell line	sgMsh2	55871464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	152	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.T1954C:p.F652L	8qB2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999639	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	55873143	12A2p6	cell line	sgMsh2	55873143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	163	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.A275G:p.Y92C	8qB2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999807	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	60922977	12A2p6	cell line	sgMsh2	60922977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	289	18	3	0.166666667	exonic	Clcn3	synonymous SNV	"Clcn3:NM_007711:exon10:c.T1788C:p.A596A,Clcn3:NM_173876:exon10:c.T1881C:p.A627A,Clcn3:NM_173873:exon11:c.T1962C:p.A654A,Clcn3:NM_173874:exon11:c.T1962C:p.A654A"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.9347656	CAG	synonymous	NA	NA	NA	NA
M7	chr8	60933131	12A2p6	cell line	sgMsh2	60933131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	140	21	4	0.19047619	exonic	Clcn3	nonsynonymous SNV	"Clcn3:NM_007711:exon6:c.T712C:p.F238L,Clcn3:NM_173876:exon6:c.T805C:p.F269L,Clcn3:NM_173873:exon7:c.T886C:p.F296L,Clcn3:NM_173874:exon7:c.T886C:p.F296L"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999287	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	61124279	12A2p6	cell line	sgMsh2	61124279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	133	38	8	0.210526316	exonic	Nek1	nonsynonymous SNV	"Nek1:NM_001293639:exon29:c.A3218G:p.N1073S,Nek1:NM_175089:exon30:c.A3293G:p.N1098S,Nek1:NM_001293638:exon31:c.A3377G:p.N1126S,Nek1:NM_001293637:exon32:c.A3509G:p.N1170S"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.542442344	2	0.9998556	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	61349484	12A2p6	cell line	sgMsh2	61349484	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	83	143	22	0.153846154	exonic	Sh3rf1	nonsynonymous SNV	Sh3rf1:NM_021506:exon5:c.G850A:p.A284T	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9981953	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr8	61515964	12A2p6	cell line	sgMsh2	61515964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	45	168	31	0.18452381	exonic	Palld	synonymous SNV	"Palld:NM_001293774:exon10:c.A1590G:p.P530P,Palld:NM_001081390:exon18:c.A3099G:p.P1033P,Palld:NM_001293773:exon18:c.A2607G:p.P869P,Palld:NM_001293772:exon20:c.A3825G:p.P1275P"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9846293	CTG	synonymous	NA	NA	NA	NA
M7	chr8	64968763	12A2p6	cell line	sgMsh2	64968763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	145	46	12	0.260869565	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T595A:p.Y199N,Tmem192:NM_028427:exon6:c.T730A:p.Y244N"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.79315099	1	0.7238705	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	64968767	12A2p6	cell line	sgMsh2	64968767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	145	47	11	0.234042553	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T599C:p.L200P,Tmem192:NM_028427:exon6:c.T734C:p.L245P"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.6394191	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	64983490	12A2p6	cell line	sgMsh2	64983490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	94	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A307G:p.T103A	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.692867532	2	0.8316756	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	64983657	12A2p6	cell line	sgMsh2	64983657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	137	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A140G:p.Q47R	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.88887611	1	0.9924394	CTG	nonsynonymous	CTGCC	11	CTGCCCTGCCC	NA
M7	chr8	65001561	12A2p6	cell line	sgMsh2	65001561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	167	0	0	NA	exonic	Trim60	nonsynonymous SNV	Trim60:NM_153097:exon2:c.A35G:p.K12R	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999846	TTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	65086574	12A2p6	cell line	sgMsh2	65086574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	163	5	0	0	exonic	Smim31	nonsynonymous SNV	Smim31:NM_001352886:exon3:c.A202G:p.T68A	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999807	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	66681852	12A2p6	cell line	sgMsh2	66681852	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	146	0	0	NA	exonic	Npy5r	synonymous SNV	"Npy5r:NM_001358957:exon2:c.A288G:p.T96T,Npy5r:NM_001358958:exon2:c.A288G:p.T96T,Npy5r:NM_016708:exon2:c.A288G:p.T96T"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.866084414	1	0.9838263	CTG	synonymous	NA	NA	NA	NA
M7	chr8	66704576	12A2p6	cell line	sgMsh2	66704576	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	140	0	0	NA	exonic	Npy1r	nonsynonymous SNV	"Npy1r:NM_010934:exon2:c.T647G:p.V216G,Npy1r:NM_001358955:exon3:c.T647G:p.V216G"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.706542549	2	0.9308335	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	66704873	12A2p6	cell line	sgMsh2	66704873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	186	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon3:c.T834C:p.L278L,Npy1r:NM_001358955:exon4:c.T834C:p.L278L"	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999948	TTA	synonymous	NA	NA	NA	NA
M7	chr8	66883578	12A2p6	cell line	sgMsh2	66883578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	158	66	9	0.136363636	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon5:c.T1156C:p.Y386H	8qB3.1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.875201093	1	0.9913335	ATA	nonsynonymous	AT	8	ATATATAT	NA
M7	chr8	69067160	12A2p6	cell line	sgMsh2	69067160	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	76	0	0	NA	exonic	Slc18a1	frameshift deletion	Slc18a1:NM_153054:exon7:c.695delG:p.G232Afs*14	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7	chr8	69135832	12A2p6	cell line	sgMsh2	69135832	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	48	0	0	NA	exonic	Lzts1	nonsynonymous SNV	"Lzts1:NM_001370971:exon4:c.G1471T:p.G491W,Lzts1:NM_199364:exon5:c.G1471T:p.G491W"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.592584073	2	0.8103955	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr8	69823579	12A2p6	cell line	sgMsh2	69823579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	135	12	0	0	exonic	Lpar2	nonsynonymous SNV	Lpar2:NM_020028:exon2:c.A17G:p.Y6C	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.697425871	2	0.9433888	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	70078389	12A2p6	cell line	sgMsh2	70078389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	4	1	0.25	exonic	Tm6sf2	nonsynonymous SNV	"Tm6sf2:NM_001293795:exon8:c.A791G:p.Y264C,Tm6sf2:NM_181540:exon8:c.A785G:p.Y262C"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.843292719	1	0.957875	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	70257220	12A2p6	cell line	sgMsh2	70257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	51	20	4	0.2	exonic	Sugp2	synonymous SNV	"Sugp2:NM_001168290:exon7:c.T2490C:p.G830G,Sugp2:NM_172755:exon7:c.T2490C:p.G830G"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.893434449	1	0.9475028	GTG	synonymous	NA	NA	NA	NA
M7	chr8	70294725	12A2p6	cell line	sgMsh2	70294725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	179	103	17	0.165048544	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1064G:p.Y355C	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.670075836	2	0.9966705	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr8	70294744	12A2p6	cell line	sgMsh2	70294744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	157	112	13	0.116071429	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1045G:p.I349V	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.619934107	2	0.9992009	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr8	70398314	12A2p6	cell line	sgMsh2	70398314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	66	27	4	0.148148148	exonic	Crtc1	nonsynonymous SNV	Crtc1:NM_001004062:exon7:c.G647A:p.C216Y	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9952797	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr8	70532667	12A2p6	cell line	sgMsh2	70532667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	79	590	81	0.137288136	exonic	Fkbp8	nonsynonymous SNV	"Fkbp8:NM_001111066:exon6:c.A833G:p.H278R,Fkbp8:NM_001199631:exon6:c.A833G:p.H278R,Fkbp8:NM_010223:exon6:c.A830G:p.H277R"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.729334244	2	0.5583107	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	71348698	12A2p6	cell line	sgMsh2	71348698	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	115	95	21	0.221052632	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3496G:p.T1166A,Myo9b:NM_001142323:exon22:c.A3496G:p.T1166A,Myo9b:NM_015742:exon22:c.A3496G:p.T1166A"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.761242617	1	0.5029331	CAC	nonsynonymous	CACC	8	CACCCACC	NA
M7	chr8	71349146	12A2p6	cell line	sgMsh2	71349146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	77	52	11	0.211538462	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3944C:p.D1315A,Myo9b:NM_001142323:exon22:c.A3944C:p.D1315A,Myo9b:NM_015742:exon23:c.A3911C:p.D1304A"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.825059363	1	0.8799442	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	71351019	12A2p6	cell line	sgMsh2	71351019	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	56	68	2	0.029411765	exonic	Myo9b	synonymous SNV	"Myo9b:NM_001142322:exon24:c.C4146T:p.G1382G,Myo9b:NM_001142323:exon24:c.C4146T:p.G1382G,Myo9b:NM_015742:exon25:c.C4107T:p.G1369G"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.993717907	1	0.9908046	GCC	synonymous	NA	NA	NA	NA
M7	chr8	71461316	12A2p6	cell line	sgMsh2	71461316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	61	74	16	0.216216216	exonic	Abhd8	nonsynonymous SNV	Abhd8:NM_022419:exon2:c.G667A:p.A223T	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.998276246	1	0.9935448	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr8	71562706	12A2p6	cell line	sgMsh2	71562706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	36	0	0	NA	exonic	Nxnl1	nonsynonymous SNV	Nxnl1:NM_145598:exon2:c.A557G:p.Y186C	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.633609124	2	8.22E-05	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	71620653	12A2p6	cell line	sgMsh2	71620653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	173	165	24	0.145454545	exonic	Colgalt1	synonymous SNV	"Colgalt1:NM_001364443:exon7:c.T987C:p.T329T,Colgalt1:NM_146211:exon7:c.T987C:p.T329T"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.9837651	CTT	synonymous	NA	NA	NA	NA
M7	chr8	71641433	12A2p6	cell line	sgMsh2	71641433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	9	4	0.444444444	exonic	Unc13a	synonymous SNV	Unc13a:NM_001029873:exon33:c.A4023G:p.V1341V	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9991836	GTA	synonymous	NA	NA	NA	NA
M7	chr8	71679027	12A2p6	cell line	sgMsh2	71679027	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	347	62	10	0.161290323	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon4:c.C358A:p.L120M,Jak3:NM_010589:exon4:c.C358A:p.L120M"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.7475676	2	0.9901421	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr8	71681541	12A2p6	cell line	sgMsh2	71681541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	46	32	15	0.46875	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon10:c.A1286G:p.Q429R,Jak3:NM_010589:exon10:c.A1286G:p.Q429R"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9854647	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	71913129	12A2p6	cell line	sgMsh2	71913129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	162	1	0	0	exonic	Zfp882	nonsynonymous SNV	Zfp882:NM_001166645:exon2:c.T11C:p.V4A	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999724	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	71965814	12A2p6	cell line	sgMsh2	71965814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	195	27	4	0.148148148	exonic	Zfp961	synonymous SNV	Zfp961:NM_001164581:exon2:c.T87C:p.D29D	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999969	ATG	synonymous	NA	NA	NA	NA
M7	chr8	72002469	12A2p6	cell line	sgMsh2	72002469	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	78	0	0	NA	exonic	Cyp4f18	nonsynonymous SNV	Cyp4f18:NM_024444:exon3:c.T262A:p.C88S	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.396575495	2	0.910294	CAT	nonsynonymous	GCAT	8	GCATGCAT	NA
M7	chr8	72204426	12A2p6	cell line	sgMsh2	72204426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	139	1	0	0	exonic	Cib3	nonsynonymous SNV	Cib3:NM_001080812:exon5:c.T466C:p.F156L	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.733892583	2	0.8092812	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	72468438	12A2p6	cell line	sgMsh2	72468438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	49	45	8	0.177777778	exonic	Cherp	synonymous SNV	"Cherp:NM_001359024:exon6:c.A756G:p.V252V,Cherp:NM_138585:exon6:c.A723G:p.V241V"	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.65184248	2	0.658794	CTA	synonymous	NA	NA	NA	NA
M7	chr8	72741820	12A2p6	cell line	sgMsh2	72741820	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	118	30	5	0.166666667	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon8:c.T923C:p.V308A	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9997518	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	72753204	12A2p6	cell line	sgMsh2	72753204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	107	32	5	0.15625	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon15:c.T2537C:p.V846A	8qB3.3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.9589675	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	75121622	12A2p6	cell line	sgMsh2	75121622	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	197	112	1	0.008928571	exonic	Mcm5	frameshift deletion	"Mcm5:NM_001302540:exon12:c.1498delG:p.E501Rfs*15,Mcm5:NM_008566:exon12:c.1498delG:p.E501Rfs*15"	8qC1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.88887611	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7	chr8	75577899	12A2p6	cell line	sgMsh2	75577899	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	101	0	0	NA	exonic	Iqcm	nonsynonymous SNV	"Iqcm:NM_027944:exon4:c.C287T:p.T96I,Iqcm:NM_001164235:exon5:c.C287T:p.T96I"	8qC1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.250708646	3	0.9999483	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr8	79248398	12A2p6	cell line	sgMsh2	79248398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	135	0	0	NA	exonic	1700011L22Rik	nonsynonymous SNV	1700011L22Rik:NM_026315:exon1:c.A55G:p.T19A	8qC1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999054	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	79274268	12A2p6	cell line	sgMsh2	79274268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	153	19	5	0.263157895	exonic	Mmaa	nonsynonymous SNV	"Mmaa:NM_133823:exon4:c.T560C:p.L187P,Mmaa:NM_001363471:exon5:c.T74C:p.L25P,Mmaa:NM_001363470:exon6:c.T560C:p.L187P,Mmaa:NM_001363472:exon6:c.T74C:p.L25P"	8qC1	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.907109466	1	0.9977263	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	80612038	12A2p6	cell line	sgMsh2	80612038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	139	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.A959G:p.D320G	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999246	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	80774950	12A2p6	cell line	sgMsh2	80774950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	175	28	4	0.142857143	exonic	Gab1	synonymous SNV	"Gab1:NM_021356:exon7:c.A1666C:p.R556R,Gab1:NM_001301298:exon8:c.A1756C:p.R586R"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.911667805	1	0.9990553	CTG	synonymous	NA	NA	NA	NA
M7	chr8	80985050	12A2p6	cell line	sgMsh2	80985050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	185	33	9	0.272727273	exonic	Usp38	synonymous SNV	Usp38:NM_027554:exon9:c.A2355G:p.S785S	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999945	GTG	synonymous	NA	NA	NA	NA
M7	chr8	82343311	12A2p6	cell line	sgMsh2	82343311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	207	15	3	0.2	exonic	Il15	synonymous SNV	"Il15:NM_001254747:exon5:c.A123T:p.V41V,Il15:NM_008357:exon5:c.A123T:p.V41V"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.779475973	2	0.5370153	CTA	synonymous	NA	NA	NA	NA
M7	chr8	83259307	12A2p6	cell line	sgMsh2	83259307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	137	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.C1741T:p.R581W,Tbc1d9:NM_001111304:exon15:c.C2440T:p.R814W"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.65184248	2	0.9912109	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr8	83354721	12A2p6	cell line	sgMsh2	83354721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	86	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon2:c.A102C:p.Q34H	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.633609124	2	0.9443708	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	83424577	12A2p6	cell line	sgMsh2	83424577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	46	0	0	NA	exonic	Clgn	nonsynonymous SNV	"Clgn:NM_001329680:exon12:c.T964C:p.Y322H,Clgn:NM_001329627:exon13:c.T1498C:p.Y500H,Clgn:NM_009904:exon13:c.T1498C:p.Y500H"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.847851058	1	0.8953817	ATA	nonsynonymous	A	6	AAAAAA	NA
M7	chr8	83668275	12A2p6	cell line	sgMsh2	83668275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	61	8	1	0.125	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.T380C:p.L127P	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.893434449	1	0.9587215	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	83668425	12A2p6	cell line	sgMsh2	83668425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	91	8	1	0.125	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.A530G:p.H177R	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.761242617	1	0.5853173	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	83669445	12A2p6	cell line	sgMsh2	83669445	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	95	16	2	0.125	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon3:c.G1130A:p.G377D	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9990856	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr8	83725997	12A2p6	cell line	sgMsh2	83725997	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.163	139	171	29	0.169590643	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon11:c.A1161G:p.I387M,Adgre5:NM_001163031:exon11:c.A1155G:p.I385M,Adgre5:NM_001163030:exon12:c.A1308G:p.I436M,Adgre5:NM_011925:exon13:c.A1443G:p.I481M"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.743009261	2	0.7447154	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr8	84090184	12A2p6	cell line	sgMsh2	84090184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	69	14	4	0.285714286	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon10:c.A1343G:p.Y448C	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9960154	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	84093075	12A2p6	cell line	sgMsh2	84093075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	91	17	7	0.411764706	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.A2015G:p.Y672C	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.875201093	1	0.9680519	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	84176098	12A2p6	cell line	sgMsh2	84176098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	67	1	0	0	exonic	Nanos3	nonsynonymous SNV	"Nanos3:NM_001357361:exon1:c.G434A:p.R145H,Nanos3:NM_194059:exon1:c.G434A:p.R145H"	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.925342822	1	0.9807111	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr8	84225887	12A2p6	cell line	sgMsh2	84225887	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.186	28	36	7	0.194444444	exonic	Zswim4	nonsynonymous SNV	Zswim4:NM_172503:exon7:c.C1445T:p.A482V	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.847851058	1	0.8738698	CGC	nonsynonymous	NA	NA	NA	NA
M7	chr8	84253982	12A2p6	cell line	sgMsh2	84253982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	138	99	14	0.141414141	exonic	Mri1	nonsynonymous SNV	Mri1:NM_026423:exon4:c.A830G:p.Y277C	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999202	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr8	84673217	12A2p6	cell line	sgMsh2	84673217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	132	183	34	0.18579235	exonic	Nacc1	nonsynonymous SNV	Nacc1:NM_025788:exon6:c.T1370C:p.V457A	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.7475676	2	0.6808882	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	84844143	12A2p6	cell line	sgMsh2	84844143	A	G	SNV	Mutect2;Vardict	2	0.032	197	2008	40	0.019920319	exonic	Calr	synonymous SNV	Calr:NM_007591:exon7:c.T882C:p.I294I	8qC2	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.145866849	3	1	CAA	synonymous	NA	NA	NA	NA
M7	chr8	84913049	12A2p6	cell line	sgMsh2	84913049	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	140	2	0	0	exonic	Mast1	nonsynonymous SNV	Mast1:NM_019945:exon26:c.A3650C:p.Q1217P	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.763981	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	84990752	12A2p6	cell line	sgMsh2	84990752	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	27	32	6	0.1875	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001167991:exon1:c.G45T:p.W15C,Hook2:NM_001363497:exon1:c.G45T:p.W15C,Hook2:NM_001363498:exon1:c.G45T:p.W15C,Hook2:NM_001372357:exon1:c.G45T:p.W15C,Hook2:NM_001372358:exon1:c.G45T:p.W15C,Hook2:NM_001372359:exon1:c.G45T:p.W15C,Hook2:NM_001372360:exon1:c.G45T:p.W15C,Hook2:NM_001372361:exon1:c.G22T:p.V8F,Hook2:NM_133255:exon1:c.G45T:p.W15C"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.958459	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr8	85055070	12A2p6	cell line	sgMsh2	85055070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	169	127	29	0.228346457	exonic	Tnpo2	nonsynonymous SNV	"Tnpo2:NM_001122843:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364031:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364032:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364033:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364034:exon22:c.T2450C:p.M817T,Tnpo2:NM_001379096:exon22:c.T2480C:p.M827T,Tnpo2:NM_145390:exon22:c.T2480C:p.M827T"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.496858954	2	0.9999991	ATG	nonsynonymous	ATG	8	ATGATGAT	NA
M7	chr8	85085445	12A2p6	cell line	sgMsh2	85085445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	118	130	23	0.176923077	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon4:c.T527C:p.L176P	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.601700751	2	0.9963041	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	85359107	12A2p6	cell line	sgMsh2	85359107	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.152	154	0	0	NA	exonic	Mylk3	nonsynonymous SNV	"Mylk3:NM_001297612:exon3:c.T398C:p.V133A,Mylk3:NM_175441:exon3:c.T797C:p.V266A"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.692867532	2	0.9744927	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	86527358	12A2p6	cell line	sgMsh2	86527358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	118	0	0	NA	exonic	Abcc12	frameshift deletion	Abcc12:NM_172912:exon20:c.2796delT:p.F932Lfs*7	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.939017839	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr8	87904495	12A2p6	cell line	sgMsh2	87904495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	75	0	0	NA	exonic	Zfp423	nonsynonymous SNV	Zfp423:NM_033327:exon2:c.G94A:p.A32T	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	2	1	1	0.9971617	GCT	nonsynonymous	CTG	10	CTGCTGCTGC	NA
M7	chr8	88308681	12A2p6	cell line	sgMsh2	88308681	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	144	0	0	NA	exonic	Adcy7	nonsynonymous SNV	"Adcy7:NM_001037723:exon5:c.T212G:p.L71R,Adcy7:NM_001037724:exon5:c.T212G:p.L71R,Adcy7:NM_001109756:exon5:c.T212G:p.L71R,Adcy7:NM_007406:exon5:c.T212G:p.L71R"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999432	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	88309697	12A2p6	cell line	sgMsh2	88309697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	111	1	0	0	exonic	Adcy7	synonymous SNV	"Adcy7:NM_001037723:exon6:c.T381C:p.P127P,Adcy7:NM_001037724:exon6:c.T381C:p.P127P,Adcy7:NM_001109756:exon6:c.T381C:p.P127P,Adcy7:NM_007406:exon6:c.T381C:p.P127P"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9996309	CTT	synonymous	NA	NA	NA	NA
M7	chr8	88746982	12A2p6	cell line	sgMsh2	88746982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	97	49	10	0.204081633	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon16:c.A2282G:p.Y761C,Cyld:NM_173369:exon17:c.A2828G:p.Y943C,Cyld:NM_001128170:exon18:c.A2837G:p.Y946C,Cyld:NM_001128171:exon18:c.A2828G:p.Y943C"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9991836	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	89032825	12A2p6	cell line	sgMsh2	89032825	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	92	0	0	NA	exonic	Sall1	nonsynonymous SNV	"Sall1:NM_001371070:exon2:c.G650A:p.G217E,Sall1:NM_001371069:exon3:c.G650A:p.G217E,Sall1:NM_021390:exon3:c.G650A:p.G217E"	8qC3	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.60625909	2	0.9798766	CCC	nonsynonymous	C	5	CCCCC	NA
M7	chr8	90933831	12A2p6	cell line	sgMsh2	90933832	AT	GC	DBS	Mutect2;Vardict	2	0.215	212	16	3	0.1875	exonic	Chd9	nonframeshift substitution	"Chd9:NM_001310530:exon1:c.1418_1419GC:p.H473R,Chd9:NM_177224:exon3:c.1418_1419GC:p.H473R"	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.98004289	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	90994482	12A2p6	cell line	sgMsh2	90994482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.14	113	20	3	0.15	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon12:c.A2897G:p.Y966C,Chd9:NM_177224:exon14:c.A2897G:p.Y966C"	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.638167463	2	0.9832596	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	90994504	12A2p6	cell line	sgMsh2	90994504	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	127	26	4	0.153846154	exonic	Chd9	synonymous SNV	"Chd9:NM_001310530:exon12:c.T2919C:p.T973T,Chd9:NM_177224:exon14:c.T2919C:p.T973T"	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.733892583	2	0.7652788	CTA	synonymous	NA	NA	NA	NA
M7	chr8	91087019	12A2p6	cell line	sgMsh2	91087019	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	110	76	18	0.236842105	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon7:c.A891T:p.L297F,Rbl2:NM_001282001:exon8:c.A1020T:p.L340F,Rbl2:NM_011250:exon8:c.A1020T:p.L340F"	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	1	1	0.9996093	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	91096777	12A2p6	cell line	sgMsh2	91096777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	138	47	12	0.255319149	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon10:c.A1332C:p.K444N,Rbl2:NM_011250:exon11:c.A1461C:p.K487N"	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.952692856	1	0.9994501	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M7	chr8	91220227	12A2p6	cell line	sgMsh2	91220227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	191	17	1	0.058823529	exonic	Rpgrip1l	nonsynonymous SNV	Rpgrip1l:NM_173431:exon26:c.C3745T:p.H1249Y	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.866084414	1	0.9924525	TGA	nonsynonymous	NA	NA	NA	NA
M7	chr8	91401873	12A2p6	cell line	sgMsh2	91401873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	194	80	6	0.075	exonic	Fto	nonsynonymous SNV	Fto:NM_011936:exon2:c.T112C:p.F38L	8qC4	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.761242617	2	0.7472673	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	92360634	12A2p6	cell line	sgMsh2	92360634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	53	59	11	0.186440678	exonic	Irx5	nonsynonymous SNV	Irx5:NM_018826:exon3:c.T1193C:p.V398A	8qC5	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.825059363	1	0.8666787	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	92678548	12A2p6	cell line	sgMsh2	92678548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	69	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.T1043C:p.L348S,Irx6:NM_022428:exon5:c.T1043C:p.L348S"	8qC5	chr8-21702348-92679958	5	3	2	0.9	4.102505121	NA	1	0.802267668	1	0.8156078	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	92830826	12A2p6	cell line	sgMsh2	92830826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	115	0	0	NA	exonic	Mmp2	nonsynonymous SNV	Mmp2:NM_008610:exon2:c.A359G:p.D120G	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.6871417	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	93039553	12A2p6	cell line	sgMsh2	93039553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	90	0	0	NA	exonic	Ces1a	synonymous SNV	Ces1a:NM_001013764:exon4:c.A432G:p.L144L	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9987861	GTA	synonymous	NA	NA	NA	NA
M7	chr8	94172860	12A2p6	cell line	sgMsh2	94172860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	109	252	53	0.21031746	exonic	Mt2	nonsynonymous SNV	Mt2:NM_008630:exon1:c.T13A:p.C5S	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.852409397	1	0.9540621	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	94649777	12A2p6	cell line	sgMsh2	94649777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	154	63	11	0.174603175	exonic	Rspry1	nonsynonymous SNV	"Rspry1:NM_001359093:exon12:c.A1298C:p.D433A,Rspry1:NM_026274:exon12:c.A1298C:p.D433A"	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999678	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	94671326	12A2p6	cell line	sgMsh2	94671326	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	120	183	64	0.349726776	exonic	Arl2bp	nonsynonymous SNV	"Arl2bp:NM_024191:exon4:c.A239C:p.Q80P,Arl2bp:NM_024269:exon4:c.A206C:p.Q69P"	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9997784	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	94906038	12A2p6	cell line	sgMsh2	94906038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	79	51	9	0.176470588	exonic	Ccdc102a	nonsynonymous SNV	Ccdc102a:NM_001033533:exon7:c.A1310C:p.E437A	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.715659227	2	0.6350092	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	95003584	12A2p6	cell line	sgMsh2	95003584	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	38	62	0	0	exonic	Adgrg1	frameshift deletion	"Adgrg1:NM_001198894:exon3:c.398delC:p.P134Rfs*1,Adgrg1:NM_018882:exon3:c.398delC:p.P134Rfs*1"	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr8	95095417	12A2p6	cell line	sgMsh2	95095417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	81	21	4	0.19047619	exonic	Katnb1	nonsynonymous SNV	Katnb1:NM_028805:exon10:c.A770G:p.Y257C	8qC5	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9979789	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	95740989	12A2p6	cell line	sgMsh2	95740989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	201	172	35	0.203488372	exonic	Cnot1	synonymous SNV	"Cnot1:NM_001205226:exon32:c.T4494C:p.C1498C,Cnot1:NM_001372351:exon32:c.T4497C:p.C1499C,Cnot1:NM_001372353:exon32:c.T4515C:p.C1505C,Cnot1:NM_153164:exon32:c.T4500C:p.C1500C,Cnot1:NM_178078:exon32:c.T4500C:p.C1500C"	8qD1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.834176041	1	0.959056	AAC	synonymous	AAC	8	AACAACAA	NA
M7	chr8	99031048	12A2p6	cell line	sgMsh2	99031048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	156	0	0	NA	exonic	Cdh8	synonymous SNV	"Cdh8:NM_001039154:exon12:c.T1917A:p.V639V,Cdh8:NM_001285913:exon12:c.T1917A:p.V639V,Cdh8:NM_001285914:exon12:c.T1917A:p.V639V,Cdh8:NM_007667:exon12:c.T1917A:p.V639V"	8qD1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.6211417	GAA	synonymous	NA	NA	NA	NA
M7	chr8	104322418	12A2p6	cell line	sgMsh2	104322418	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	120	0	0	NA	exonic	Cmtm2b	frameshift deletion	Cmtm2b:NM_028524:exon1:c.64delA:p.G23Afs*23	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.743009261	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr8	104484372	12A2p6	cell line	sgMsh2	104484372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	41	0	0	NA	exonic	Terb1	nonsynonymous SNV	Terb1:NM_180958:exon12:c.A1022G:p.N341S	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.79315099	1	0.8061295	ATT	nonsynonymous	T	5	TTTTT	NA
M7	chr8	104619895	12A2p6	cell line	sgMsh2	104619895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	56	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon6:c.T676C:p.Y226H,Cdh16:NM_001252628:exon7:c.T766C:p.Y256H,Cdh16:NM_007663:exon7:c.T766C:p.Y256H"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.638167463	2	0.7699322	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	104621641	12A2p6	cell line	sgMsh2	104621641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	58	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon5:c.T353C:p.L118P,Cdh16:NM_001252628:exon6:c.T443C:p.L148P,Cdh16:NM_007663:exon6:c.T443C:p.L148P"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.948134517	1	0.9821503	GAG	nonsynonymous	AGGAAG	12	AGGAAGAGGAAG	NA
M7	chr8	104741414	12A2p6	cell line	sgMsh2	104741414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	101	0	0	NA	exonic	Ces2a	stoploss	"Ces2a:NM_001190330:exon11:c.T1576C:p.X526Q,Ces2a:NM_133960:exon12:c.T1675C:p.X559Q"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.98004289	1	0.9988195	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	105178680	12A2p6	cell line	sgMsh2	105178680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	140	267	42	0.157303371	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.T253C:p.Y85H,Cbfb:NM_001161458:exon3:c.T253C:p.Y85H,Cbfb:NM_022309:exon3:c.T253C:p.Y85H"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.565234039	2	0.9997861	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr8	105332119	12A2p6	cell line	sgMsh2	105332119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	100	79	13	0.164556962	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon14:c.T2216C:p.L739P	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.774917634	1	0.6511682	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	105375733	12A2p6	cell line	sgMsh2	105375733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.401	90	2	0	0	exonic	Plekhg4	nonsynonymous SNV	"Plekhg4:NM_001081333:exon1:c.A353G:p.N118S,Plekhg4:NM_001364406:exon3:c.A461G:p.N154S"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9987861	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	105449702	12A2p6	cell line	sgMsh2	105449702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	166	0	0	NA	exonic	Lrrc36	nonsynonymous SNV	"Lrrc36:NM_001033371:exon5:c.A707G:p.Y236C,Lrrc36:NM_001170789:exon5:c.A713G:p.Y238C,Lrrc36:NM_001170788:exon8:c.A1076G:p.Y359C"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.774917634	2	0.5061072	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	105452239	12A2p6	cell line	sgMsh2	105452239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	123	0	0	NA	exonic	Lrrc36	synonymous SNV	"Lrrc36:NM_001033371:exon6:c.T1065C:p.G355G,Lrrc36:NM_001170789:exon6:c.T1071C:p.G357G,Lrrc36:NM_001170788:exon9:c.T1434C:p.G478G"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.492300615	2	0.9999472	GTA	synonymous	NA	NA	NA	NA
M7	chr8	105468478	12A2p6	cell line	sgMsh2	105468478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	111	3	1	0.333333333	exonic	Tppp3	synonymous SNV	Tppp3:NM_026481:exon2:c.A150T:p.V50V	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.852409397	1	0.9551958	TTA	synonymous	NA	NA	NA	NA
M7	chr8	105522199	12A2p6	cell line	sgMsh2	105522199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	108	0	0	NA	exonic	Hsd11b2	nonsynonymous SNV	Hsd11b2:NM_008289:exon2:c.A322G:p.T108A	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.797709329	1	0.7813309	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	105700789	12A2p6	cell line	sgMsh2	105700789	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	81	54	10	0.185185185	exonic	Acd	synonymous SNV	Acd:NM_001012638:exon2:c.T150A:p.P50P	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.948134517	1	0.9930346	CAG	synonymous	NA	NA	NA	NA
M7	chr8	105708453	12A2p6	cell line	sgMsh2	105708453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	131	0	0	NA	exonic	4933405L10Rik	synonymous SNV	"4933405L10Rik:NM_001357256:exon1:c.A22C:p.R8R,4933405L10Rik:NM_027655:exon1:c.A22C:p.R8R"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.843292719	1	0.9511169	GAG	synonymous	NA	NA	NA	NA
M7	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	107	176	37	0.210227273	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.984601229	1	0.9992464	GGC	synonymous	NA	NA	NA	NA
M7	chr8	106011354	12A2p6	cell line	sgMsh2	106011354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	61	18	1	0.055555556	exonic	Ddx28	nonsynonymous SNV	Ddx28:NM_028038:exon1:c.T71C:p.L24P	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.733892583	1	0.566463	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	106092120	12A2p6	cell line	sgMsh2	106092120	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	178	107	25	0.23364486	exonic	Nfatc3	nonsynonymous SNV	"Nfatc3:NM_001368796:exon4:c.A1493T:p.Q498L,Nfatc3:NM_001368797:exon4:c.A1469T:p.Q490L,Nfatc3:NM_010901:exon4:c.A1493T:p.Q498L"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.774917634	2	0.5355297	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	106131676	12A2p6	cell line	sgMsh2	106131676	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	182	50	8	0.16	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon14:c.T2052G:p.F684L	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.802267668	1	0.7841924	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr8	106131688	12A2p6	cell line	sgMsh2	106131688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	179	49	8	0.163265306	exonic	Esrp2	synonymous SNV	Esrp2:NM_176838:exon14:c.A2040G:p.L680L	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.761242617	2	0.7059974	GTA	synonymous	NA	NA	NA	NA
M7	chr8	106219993	12A2p6	cell line	sgMsh2	106219993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	112	19	0.169642857	exonic	Prmt7	nonsynonymous SNV	Prmt7:NM_145404:exon4:c.T206C:p.L69P	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.897992788	1	0.9952875	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	106666236	12A2p6	cell line	sgMsh2	106666236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	84	1037	176	0.169720347	exonic	Cdh1	nonsynonymous SNV	Cdh1:NM_009864:exon15:c.T2351C:p.V784A	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9982947	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	106692630	12A2p6	cell line	sgMsh2	106692630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	184	27	5	0.185185185	exonic	Tango6	nonsynonymous SNV	Tango6:NM_173037:exon3:c.T808C:p.Y270H	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.9927081	CTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	106991441	12A2p6	cell line	sgMsh2	106991441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	94	62	11	0.177419355	exonic	Sntb2	synonymous SNV	"Sntb2:NM_001368316:exon3:c.A780G:p.L260L,Sntb2:NM_009229:exon3:c.A780G:p.L260L"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.9509133	TAC	synonymous	NA	NA	NA	NA
M7	chr8	107058147	12A2p6	cell line	sgMsh2	107058147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	105	182	30	0.164835165	exonic	Nip7	nonsynonymous SNV	Nip7:NM_025391:exon4:c.A383G:p.Y128C	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.820501024	1	0.8797816	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	175	36	3	0.083333333	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.665517497	2	0.9969028	GAG	synonymous	NA	NA	NA	NA
M7	chr8	108949466	12A2p6	cell line	sgMsh2	108949466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	76	31	3	0.096774194	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.A7147G:p.T2383A	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.961809534	1	0.9936955	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	109548443	12A2p6	cell line	sgMsh2	109548443	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	91	87	7	0.08045977	exonic	Dhx38	frameshift deletion	Dhx38:NM_178380:exon27:c.3643delG:p.E1215Sfs*2	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.820501024	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	518	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.806826007	1	0.8028034	ACA	synonymous	NA	NA	NA	NA
M7	chr8	109683676	12A2p6	cell line	sgMsh2	109683676	T	-	Deletion	Strelka2;Vardict	2	0.1888	143	1	1	1	exonic	Ist1	frameshift deletion	"Ist1:NM_001361562:exon2:c.88delA:p.T30Rfs*28,Ist1:NM_028018:exon2:c.88delA:p.T30Rfs*28"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.860614408	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M7	chr8	109723981	12A2p6	cell line	sgMsh2	109723981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	185	52	11	0.211538462	exonic	Zfp821	nonsynonymous SNV	"Zfp821:NM_001363382:exon7:c.T605C:p.V202A,Zfp821:NM_001286393:exon8:c.T152C:p.V51A,Zfp821:NM_001363381:exon8:c.T605C:p.V202A,Zfp821:NM_001363383:exon8:c.T605C:p.V202A,Zfp821:NM_001363384:exon8:c.T152C:p.V51A,Zfp821:NM_001363386:exon8:c.T152C:p.V51A,Zfp821:NM_029468:exon8:c.T605C:p.V202A,Zfp821:NM_001167946:exon9:c.T605C:p.V202A,Zfp821:NM_001286391:exon9:c.T152C:p.V51A,Zfp821:NM_001363380:exon9:c.T605C:p.V202A,Zfp821:NM_001363385:exon9:c.T152C:p.V51A"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.761242617	2	0.7229716	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr8	109803054	12A2p6	cell line	sgMsh2	109803054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	152	133	24	0.180451128	exonic	Ap1g1	synonymous SNV	"Ap1g1:NM_001301211:exon2:c.G105A:p.R35R,Ap1g1:NM_009677:exon2:c.G105A:p.R35R"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.784034312	1	0.627831	GGT	synonymous	NA	NA	NA	NA
M7	chr8	109940178	12A2p6	cell line	sgMsh2	109940178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	124	19	1	0.052631579	exonic	Phlpp2	nonsynonymous SNV	Phlpp2:NM_001122594:exon19:c.G3338A:p.S1113N	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.733892583	2	0.7532396	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr8	110154658	12A2p6	cell line	sgMsh2	110154658	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	94	0	0	NA	exonic	Calb2	nonsynonymous SNV	"Calb2:NM_001368293:exon3:c.G256T:p.A86S,Calb2:NM_007586:exon3:c.G256T:p.A86S"	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.834176041	1	0.9113563	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr8	110222125	12A2p6	cell line	sgMsh2	110222125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	210	45	8	0.177777778	exonic	Cmtr2	nonsynonymous SNV	Cmtr2:NM_146215:exon2:c.T1066C:p.F356L	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.83873438	1	0.9708599	CTT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M7	chr8	110267353	12A2p6	cell line	sgMsh2	110267353	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	197	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon2:c.A18T:p.K6N	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.9344595	1	0.9998722	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	110450342	12A2p6	cell line	sgMsh2	110450342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	97	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon21:c.A3029G:p.K1010R	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9991836	AAG	nonsynonymous	A	5	AAAAA	NA
M7	chr8	110490782	12A2p6	cell line	sgMsh2	110490782	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	60	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon28:c.T4301A:p.I1434N	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9933783	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr8	110609672	12A2p6	cell line	sgMsh2	110609672	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	133	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon87:c.G15080T:p.S5027I	8qD3	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.656400819	2	0.9873985	AGC	nonsynonymous	NA	NA	NA	NA
M7	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	92	34	9	0.264705882	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9989161	TAC	synonymous	NA	NA	NA	NA
M7	chr8	111075417	12A2p6	cell line	sgMsh2	111075417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	37	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon5:c.T693C:p.C231C	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9760128	CAC	synonymous	NA	NA	NA	NA
M7	chr8	111124575	12A2p6	cell line	sgMsh2	111124575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	147	7	0	0	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon12:c.T1565C:p.V522A	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.597142412	2	0.9994822	GTC	nonsynonymous	TG	9	TGTGTGTGT	NA
M7	chr8	111504389	12A2p6	cell line	sgMsh2	111504389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	191	42	6	0.142857143	exonic	Wdr59	synonymous SNV	"Wdr59:NM_001170742:exon3:c.T186C:p.I62I,Wdr59:NM_001170743:exon3:c.T186C:p.I62I,Wdr59:NM_176923:exon3:c.T186C:p.I62I"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.688309193	2	0.9943009	CAA	synonymous	NA	NA	NA	NA
M7	chr8	111504457	12A2p6	cell line	sgMsh2	111504457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	189	33	0	0	exonic	Wdr59	nonsynonymous SNV	"Wdr59:NM_001170742:exon3:c.T118C:p.Y40H,Wdr59:NM_001170743:exon3:c.T118C:p.Y40H,Wdr59:NM_176923:exon3:c.T118C:p.Y40H"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.569792378	2	0.9999918	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	111688682	12A2p6	cell line	sgMsh2	111688682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	75	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon5:c.A359C:p.D120A	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9971617	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	111713461	12A2p6	cell line	sgMsh2	111713461	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	196	38	0.193877551	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A1900T:p.S634C,Bcar1:NM_009954:exon5:c.A1900T:p.S634C"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9999054	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	111714373	12A2p6	cell line	sgMsh2	111714373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	93	134	17	0.126865672	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A988G:p.T330A,Bcar1:NM_009954:exon5:c.A988G:p.T330A"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.770359295	1	0.6382121	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	112753904	12A2p6	cell line	sgMsh2	112753904	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	204	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon7:c.T982A:p.Y328N	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.9344595	1	0.9999016	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr8	113638823	12A2p6	cell line	sgMsh2	113638823	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	62	8	2	0.25	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon3:c.G782A:p.R261H,Mon1b:NM_001048143:exon4:c.G782A:p.R261H"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.578909056	2	0.9305935	CGT	nonsynonymous	NA	NA	NA	NA
M7	chr8	113639059	12A2p6	cell line	sgMsh2	113639059	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.161	66	12	1	0.083333333	exonic	Mon1b	frameshift deletion	"Mon1b:NM_173015:exon3:c.1018delG:p.G340Vfs*35,Mon1b:NM_001048143:exon4:c.1018delG:p.G340Vfs*35"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.733892583	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7	chr8	113737642	12A2p6	cell line	sgMsh2	113737642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	179	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon15:c.A2183C:p.E728A	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999922	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	113775269	12A2p6	cell line	sgMsh2	113775269	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	133	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon5:c.C959T:p.T320I	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.999894	TGT	nonsynonymous	NA	NA	NA	NA
M7	chr8	116971476	12A2p6	cell line	sgMsh2	116971476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	100	0	0	NA	exonic	1700030J22Rik	synonymous SNV	"1700030J22Rik:NM_001357253:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357254:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357255:exon3:c.T570C:p.T190T,1700030J22Rik:NM_027103:exon3:c.T891C:p.T297T"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9993113	CAG	synonymous	GTGG	9	GTGGGTGGG	NA
M7	chr8	117596440	12A2p6	cell line	sgMsh2	117596440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	74	13	3	0.230769231	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon20:c.A2233G:p.M745V	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9969966	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	117663794	12A2p6	cell line	sgMsh2	117663794	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	139	2	1	0.5	exonic	Sdr42e1	nonsynonymous SNV	"Sdr42e1:NM_001357273:exon3:c.T107A:p.I36N,Sdr42e1:NM_028725:exon3:c.T107A:p.I36N,Sdr42e1:NM_001357272:exon4:c.T107A:p.I36N"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9999246	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	117663826	12A2p6	cell line	sgMsh2	117663826	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	2	0	0	exonic	Sdr42e1	synonymous SNV	"Sdr42e1:NM_001357273:exon3:c.C75G:p.G25G,Sdr42e1:NM_028725:exon3:c.C75G:p.G25G,Sdr42e1:NM_001357272:exon4:c.C75G:p.G25G"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.88887611	1	0.9914891	AGC	synonymous	NA	NA	NA	NA
M7	chr8	117758891	12A2p6	cell line	sgMsh2	117758891	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	110	3	0	0	exonic	Hsd17b2	frameshift deletion	Hsd17b2:NM_008290:exon5:c.1092delA:p.G367Vfs*10	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.738450922	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7	chr8	119596879	12A2p6	cell line	sgMsh2	119596879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	97	0	0	NA	exonic	Dnaaf1	nonsynonymous SNV	Dnaaf1:NM_026648:exon11:c.A1606G:p.I536V	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9991836	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	120674044	12A2p6	cell line	sgMsh2	120674044	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	90	2173	386	0.177634607	exonic	Cox4i1	nonsynonymous SNV	"Cox4i1:NM_001293559:exon5:c.G447T:p.K149N,Cox4i1:NM_009941:exon5:c.G558T:p.K186N"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.588025734	2	0.9859557	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr8	121117819	12A2p6	cell line	sgMsh2	121117819	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.502	12	0	0	NA	exonic	Foxc2	frameshift deletion	Foxc2:NM_013519:exon1:c.1205delC:p.P403Rfs*17	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	3	1	NA	NA	GCC	frameshift	CCGC	10	CCGCCCGCCC	-1
M7	chr8	121753638	12A2p6	cell line	sgMsh2	121753638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	73	0	0	NA	exonic	Jph3	nonsynonymous SNV	Jph3:NM_020605:exon2:c.A1054G:p.I352V	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.856967736	1	0.934667	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	89	32	9	0.28125	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.870642753	1	0.9627289	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	122439655	12A2p6	cell line	sgMsh2	122439655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	84	118	17	0.144067797	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.A242G:p.Q81R	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.624492446	2	0.950501	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	122468690	12A2p6	cell line	sgMsh2	122468690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	139	49	13	0.265306122	exonic	Rnf166	nonsynonymous SNV	"Rnf166:NM_001033142:exon3:c.T349C:p.C117R,Rnf166:NM_001368370:exon3:c.T22C:p.C8R"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.533325666	2	0.9999381	CAG	nonsynonymous	CAGG	8	CAGGCAGG	NA
M7	chr8	122575452	12A2p6	cell line	sgMsh2	122575452	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	65	499	71	0.142284569	exonic	Aprt	nonsynonymous SNV	Aprt:NM_009698:exon3:c.A271G:p.K91E	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.825059363	1	0.87346	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr8	122622101	12A2p6	cell line	sgMsh2	122622101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	51	0	0	NA	exonic	Pabpn1l	synonymous SNV	Pabpn1l:NM_001007462:exon2:c.A267G:p.K89K	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	2	1	1	0.9890151	GTT	synonymous	NA	NA	NA	NA
M7	chr8	122813653	12A2p6	cell line	sgMsh2	122813653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	103	30	4	0.133333333	exonic	Acsf3	nonsynonymous SNV	Acsf3:NM_144932:exon9:c.A1589G:p.D530G	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.999419	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr8	122865142	12A2p6	cell line	sgMsh2	122865142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	66	0	0	NA	exonic	Cdh15	nonsynonymous SNV	Cdh15:NM_007662:exon11:c.C1765T:p.P589S	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.998276246	1	0.995119	GCC	nonsynonymous	TGCC	8	TGCCTGCC	NA
M7	chr8	122890651	12A2p6	cell line	sgMsh2	122890651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	112	84	11	0.130952381	exonic	Ankrd11	nonsynonymous SNV	Ankrd11:NM_001081379:exon9:c.T6398C:p.L2133P	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	1	1	0.9996512	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	123200965	12A2p6	cell line	sgMsh2	123200965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	105	1	0	0	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon11:c.A1139G:p.Y380C	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.802267668	1	0.8060014	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr8	123233934	12A2p6	cell line	sgMsh2	123233934	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	79	4	0	0	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.A615G:p.Q205Q,Spata2l:NM_001357302:exon2:c.A237G:p.Q79Q,Spata2l:NM_001357301:exon3:c.A615G:p.Q205Q,Spata2l:NM_030176:exon3:c.A615G:p.Q205Q"	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.296292037	3	0.9884878	CTT	synonymous	NA	NA	NA	NA
M7	chr8	123282666	12A2p6	cell line	sgMsh2	123282666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	278	33	1	0.03030303	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon29:c.T2786C:p.L929P	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.752125939	2	0.9525161	CAG	nonsynonymous	TTCCAG	12	TTCCAGTTCCAG	NA
M7	chr8	123305856	12A2p6	cell line	sgMsh2	123305856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	118	19	1	0.052631579	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon11:c.T888C:p.P296P	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.943576178	1	0.9982253	TAG	synonymous	NA	NA	NA	NA
M7	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	167	8	0	0	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.237033629	3	7.74E-09	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M7	chr8	124025157	12A2p6	cell line	sgMsh2	124025157	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	167	30	8	0.266666667	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon3:c.C228A:p.N76K,Urb2:NM_001368414:exon3:c.C228A:p.N76K"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.920784483	1	0.9992305	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr8	124025166	12A2p6	cell line	sgMsh2	124025166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	166	32	6	0.1875	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon3:c.T237C:p.H79H,Urb2:NM_001368414:exon3:c.T237C:p.H79H"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.925342822	1	0.9993639	ATA	synonymous	NA	NA	NA	NA
M7	chr8	124028714	12A2p6	cell line	sgMsh2	124028714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	182	40	12	0.3	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1159C:p.F387L,Urb2:NM_001368414:exon4:c.T1159C:p.F387L"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.724775905	2	0.9468598	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr8	124030388	12A2p6	cell line	sgMsh2	124030388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	185	45	6	0.133333333	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T2833C:p.C945R,Urb2:NM_001368414:exon4:c.T2833C:p.C945R"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.79315099	1	0.6870396	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	124728407	12A2p6	cell line	sgMsh2	124728407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	186	24	7	0.291666667	exonic	Arv1	nonsynonymous SNV	"Arv1:NM_001368372:exon3:c.A358G:p.S120G,Arv1:NM_026855:exon3:c.A358G:p.S120G"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.920784483	1	0.9995912	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	125482101	12A2p6	cell line	sgMsh2	125482101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	103	0	0	NA	exonic	Sipa1l2	nonsynonymous SNV	"Sipa1l2:NM_001081337:exon2:c.A1567G:p.R523G,Sipa1l2:NM_001357372:exon4:c.A1567G:p.R523G"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.879759432	1	0.977859	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	62	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.720217566	2	0.5013096	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr8	126949307	12A2p6	cell line	sgMsh2	126949307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	104	104	10	0.096153846	exonic	Rbm34	synonymous SNV	"Rbm34:NM_001374800:exon10:c.A1197G:p.A399A,Rbm34:NM_172762:exon11:c.A1257G:p.A419A"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.893434449	1	0.9856516	CTG	synonymous	NA	NA	NA	NA
M7	chr8	127474550	12A2p6	cell line	sgMsh2	127474550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	125	21	2	0.095238095	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon21:c.A3303G:p.E1101E,Pard3:NM_001309391:exon22:c.A3348G:p.E1116E,Pard3:NM_001363431:exon22:c.A3258G:p.E1086E,Pard3:NM_001363432:exon22:c.A3354G:p.E1118E,Pard3:NM_033620:exon22:c.A3345G:p.E1115E"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.966367873	1	0.9994219	AAG	synonymous	NA	NA	NA	NA
M7	chr8	128497982	12A2p6	cell line	sgMsh2	128497982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	70	7	0	0	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon14:c.A2204G:p.Y735C,Nrp1:NM_001358960:exon14:c.A2225G:p.Y742C,Nrp1:NM_008737:exon14:c.A2225G:p.Y742C"	8qE2	chr8-92830365-129138455	5	3	2	0.9	4.102505121	NA	1	0.884317771	1	0.9602092	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	3458787	12A2p6	cell line	sgMsh2	3458787	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.169	106	20	0	0	exonic	Cwf19l2	frameshift insertion	Cwf19l2:NM_027545:exon15:c.2236dupT:p.L747Ffs*3	9qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TCT	frameshift	T	5	TTTTT	1
M7	chr9	3634650	12A2p6	cell line	sgMsh2	3634650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	135	5	0	0	exonic	Gucy1a2	synonymous SNV	Gucy1a2:NM_001033322:exon4:c.T693C:p.G231G	9qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7	chr9	4308732	12A2p6	cell line	sgMsh2	4308732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	170	100	24	0.24	exonic;splicing	Aasdhppt;Aasdhppt	nonsynonymous SNV	Aasdhppt:NM_026276:exon2:c.T371C:p.V124A	9qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	4309405	12A2p6	cell line	sgMsh2	4309405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	44	67	19	0.28358209	exonic	Aasdhppt	nonsynonymous SNV	"Aasdhppt:NM_001326359:exon1:c.T32C:p.V11A,Aasdhppt:NM_026276:exon1:c.T32C:p.V11A"	9qA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	4330961	12A2p6	cell line	sgMsh2	4330961	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	233	2	0	0	exonic	Kbtbd3	nonsynonymous SNV	"Kbtbd3:NM_001164574:exon3:c.C1334T:p.A445V,Kbtbd3:NM_026962:exon4:c.C1334T:p.A445V"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.136750171	3	1	GCC	nonsynonymous	NA	NA	NA	NA
M7	chr9	4384088	12A2p6	cell line	sgMsh2	4384088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	116	255	57	0.223529412	exonic	Msantd4	synonymous SNV	Msantd4:NM_145609:exon2:c.A408G:p.G136G	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	GAT	synonymous	NA	NA	NA	NA
M7	chr9	4664969	12A2p6	cell line	sgMsh2	4664969	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.187	87	0	0	NA	exonic	Gria4	frameshift insertion	"Gria4:NM_001113180:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_001113181:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_019691:exon4:c.285dupT:p.G96Wfs*3"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.852409397	NA	NA	CCA	frameshift	A	5	AAAAA	1
M7	chr9	5299382	12A2p6	cell line	sgMsh2	5299382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	127	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon2:c.A110G:p.Q37R	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999851	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	5303669	12A2p6	cell line	sgMsh2	5303669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	131	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon6:c.T754C:p.S252P	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998813	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	5348935	12A2p6	cell line	sgMsh2	5348935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	183	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon3:c.T296C:p.I99T	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9999766	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr9	6983433	12A2p6	cell line	sgMsh2	6983433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	66	19	5	0.263157895	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon83:c.A12110G:p.N4037S	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.7475676	1	0.6045668	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	6992577	12A2p6	cell line	sgMsh2	6992577	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	55	18	6	0.333333333	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon82:c.T11983G:p.F3995V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	7114896	12A2p6	cell line	sgMsh2	7114896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	124	25	5	0.2	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon44:c.T7261G:p.F2421V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998234	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	7455659	12A2p6	cell line	sgMsh2	7455659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	125	24	2	0.083333333	exonic	Mmp3	nonsynonymous SNV	Mmp3:NM_010809:exon10:c.T1409C:p.I470T	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.7722302	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr9	7503275	12A2p6	cell line	sgMsh2	7503275	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	162	42	11	0.261904762	exonic	Mmp10	nonsynonymous SNV	Mmp10:NM_019471:exon2:c.C235G:p.L79V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999795	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr9	8610048	12A2p6	cell line	sgMsh2	8610048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	191	0	0	NA	exonic	Trpc6	synonymous SNV	"Trpc6:NM_001282086:exon2:c.T516C:p.Y172Y,Trpc6:NM_001282087:exon2:c.T516C:p.Y172Y,Trpc6:NM_013838:exon2:c.T516C:p.Y172Y"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999961	ATG	synonymous	NA	NA	NA	NA
M7	chr9	8901181	12A2p6	cell line	sgMsh2	8901181	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	26	0	0	NA	exonic	Pgr	frameshift deletion	Pgr:NM_008829:exon1:c.714delA:p.K239Rfs*72	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr9	9238774	12A2p6	cell line	sgMsh2	9238774	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	16	3	0	0	exonic	Arhgap42	frameshift deletion	"Arhgap42:NM_001372563:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372564:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372565:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372566:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372567:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372568:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372569:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_001372570:exon1:c.6delG:p.L3Cfs*37,Arhgap42:NM_027823:exon1:c.6delG:p.L3Cfs*37"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7	chr9	9673855	12A2p6	cell line	sgMsh2	9673855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	98	0	0	NA	exonic	Cntn5	synonymous SNV	"Cntn5:NM_001033359:exon18:c.C2241T:p.Y747Y,Cntn5:NM_001170787:exon22:c.C2856T:p.Y952Y"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.9992286	TGT	synonymous	NA	NA	NA	NA
M7	chr9	13782310	12A2p6	cell line	sgMsh2	13782310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	255	116	37	0.318965517	exonic	Mtmr2	synonymous SNV	"Mtmr2:NM_001373873:exon2:c.T114C:p.H38H,Mtmr2:NM_023858:exon2:c.T114C:p.H38H"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
M7	chr9	13810656	12A2p6	cell line	sgMsh2	13810656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	165	158	25	0.158227848	exonic	Cep57	synonymous SNV	"Cep57:NM_001310721:exon8:c.T1017C:p.T339T,Cep57:NM_026665:exon9:c.T1095C:p.T365T"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999827	AAG	synonymous	NA	NA	NA	NA
M7	chr9	14727455	12A2p6	cell line	sgMsh2	14727455	A	G	SNV	Mutect2;Vardict	2	0.031	176	0	0	NA	exonic	Piwil4	nonsynonymous SNV	"Piwil4:NM_001368831:exon7:c.T773C:p.V258A,Piwil4:NM_001368832:exon7:c.T773C:p.V258A"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.14130851	3	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	14786962	12A2p6	cell line	sgMsh2	14786962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	180	85	15	0.176470588	exonic	Mre11a	synonymous SNV	"Mre11a:NM_001310728:exon3:c.T105C:p.D35D,Mre11a:NM_018736:exon3:c.T105C:p.D35D"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9999086	ATA	synonymous	NA	NA	NA	NA
M7	chr9	15330553	12A2p6	cell line	sgMsh2	15330553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	95	32	7	0.21875	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon17:c.A5476G:p.T1826A	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	15600919	12A2p6	cell line	sgMsh2	15600919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	91	0	0	NA	exonic	Deup1	nonsynonymous SNV	"Deup1:NM_001373919:exon5:c.A431G:p.K144R,Deup1:NM_001373920:exon5:c.A527G:p.K176R,Deup1:NM_001373917:exon6:c.A527G:p.K176R,Deup1:NM_001373921:exon6:c.A527G:p.K176R,Deup1:NM_181816:exon6:c.A527G:p.K176R,Deup1:NM_001373918:exon7:c.A464G:p.K155R"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8988544	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	16029910	12A2p6	cell line	sgMsh2	16029910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	98	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.T4096C:p.Y1366H	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	TAA	nonsynonymous	NA	NA	NA	NA
M7	chr9	18330705	12A2p6	cell line	sgMsh2	18330705	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	96	0	0	NA	exonic	Naalad2	nonsynonymous SNV	"Naalad2:NM_028279:exon16:c.C1788A:p.N596K,Naalad2:NM_001357400:exon18:c.C1902A:p.N634K,Naalad2:NM_001357399:exon19:c.C1902A:p.N634K"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.679192515	2	0.8863444	AGT	nonsynonymous	T	5	TTTTT	NA
M7	chr9	18385835	12A2p6	cell line	sgMsh2	18385835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	64	0	0	NA	exonic	Naalad2	nonsynonymous SNV	"Naalad2:NM_028279:exon1:c.A40G:p.I14V,Naalad2:NM_001357400:exon3:c.A154G:p.I52V,Naalad2:NM_001357399:exon4:c.A154G:p.I52V"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9547125	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	18409431	12A2p6	cell line	sgMsh2	18409431	-	A	Insertion	Strelka2;Vardict	2	0.209	67	0	0	NA	exonic	Ubtfl1	frameshift insertion	"Ubtfl1:NM_001360216:exon2:c.255dupA:p.T88Nfs*4,Ubtfl1:NM_001033793:exon3:c.255dupA:p.T88Nfs*4"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.952692856	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
M7	chr9	18467980	12A2p6	cell line	sgMsh2	18467980	A	G	SNV	Mutect2;Vardict	2	0.04	102	3	0	0	exonic	Zfp558	synonymous SNV	"Zfp558:NM_028160:exon5:c.T187C:p.L63L,Zfp558:NM_028935:exon5:c.T187C:p.L63L"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	0.9999999	AAA	synonymous	NA	NA	NA	NA
M7	chr9	18945178	12A2p6	cell line	sgMsh2	18945178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	193	0	0	NA	exonic	Olfr832	frameshift deletion	Olfr832:NM_001011824:exon1:c.529delT:p.C179Vfs*23	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr9	19361193	12A2p6	cell line	sgMsh2	19361193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	260	0	0	NA	exonic	Olfr846	nonsynonymous SNV	Olfr846:NM_146282:exon1:c.A161G:p.H54R	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	19585277	12A2p6	cell line	sgMsh2	19585277	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.215	191	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.G739T:p.V247L	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9999878	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	19585371	12A2p6	cell line	sgMsh2	19585371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	119	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A833G:p.Y278C	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.959469	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	19713420	12A2p6	cell line	sgMsh2	19713420	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	265	0	0	NA	exonic	Olfr857	nonsynonymous SNV	Olfr857:NM_001012265:exon1:c.G592A:p.V198I	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.123075154	3	1	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	19808377	12A2p6	cell line	sgMsh2	19808377	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	309	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G58T:p.D20Y	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9999454	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr9	20101525	12A2p6	cell line	sgMsh2	20101525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	113	0	0	NA	exonic	Olfr868	synonymous SNV	Olfr868:NM_146559:exon2:c.T765C:p.Y255Y	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996705	ATG	synonymous	NA	NA	NA	NA
M7	chr9	20300766	12A2p6	cell line	sgMsh2	20300766	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	193	0	0	NA	exonic	Olfr873	nonsynonymous SNV	Olfr873:NM_146561:exon1:c.A556C:p.N186H	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.9999476	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr9	20438356	12A2p6	cell line	sgMsh2	20438356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	119	43	7	0.162790698	exonic	Zfp26	nonsynonymous SNV	"Zfp26:NM_001357809:exon10:c.T911G:p.L304R,Zfp26:NM_011753:exon10:c.T911G:p.L304R"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997655	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	20878353	12A2p6	cell line	sgMsh2	20878353	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	17	0	0	NA	exonic	Angptl6	nonsynonymous SNV	Angptl6:NM_145154:exon2:c.T242G:p.L81R	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.928991	GAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	20922368	12A2p6	cell line	sgMsh2	20922368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	122	128	25	0.1953125	exonic	Dnmt1	synonymous SNV	"Dnmt1:NM_001199431:exon20:c.T1728C:p.D576D,Dnmt1:NM_001199432:exon20:c.T1371C:p.D457D,Dnmt1:NM_001199433:exon20:c.T1374C:p.D458D,Dnmt1:NM_001314011:exon20:c.T1749C:p.D583D,Dnmt1:NM_010066:exon20:c.T1725C:p.D575D"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998022	CAT	synonymous	TCA	8	TCATCATC	NA
M7	chr9	21007720	12A2p6	cell line	sgMsh2	21007720	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	116	81	11	0.135802469	exonic	Mrpl4	synonymous SNV	"Mrpl4:NM_001357899:exon7:c.T660C:p.S220S,Mrpl4:NM_023167:exon7:c.T642C:p.S214S"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	GTT	synonymous	NA	NA	NA	NA
M7	chr9	21149856	12A2p6	cell line	sgMsh2	21149856	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	28	544	144	0.264705882	exonic	Cdc37	nonsynonymous SNV	"Cdc37:NM_001378796:exon1:c.T2G:p.M1R,Cdc37:NM_016742:exon1:c.T2G:p.M1R"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.96066	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	21233517	12A2p6	cell line	sgMsh2	21233517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	51	61	11	0.180327869	exonic	Keap1	nonsynonymous SNV	"Keap1:NM_016679:exon2:c.T1196C:p.M399T,Keap1:NM_001110305:exon3:c.T1196C:p.M399T,Keap1:NM_001110306:exon3:c.T1196C:p.M399T,Keap1:NM_001110307:exon3:c.T1196C:p.M399T"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.6354723	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	21305374	12A2p6	cell line	sgMsh2	21305374	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	59	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon5:c.T581G:p.I194S,Ap1m2:NM_009678:exon5:c.T581G:p.I194S"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	21634777	12A2p6	cell line	sgMsh2	21634777	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	147	184	2	0.010869565	exonic	Smarca4	nonsynonymous SNV	"Smarca4:NM_001174078:exon3:c.A250G:p.M84V,Smarca4:NM_001174079:exon3:c.A250G:p.M84V,Smarca4:NM_001357764:exon3:c.A250G:p.M84V,Smarca4:NM_011417:exon3:c.A250G:p.M84V"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.237033629	3	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	21723828	12A2p6	cell line	sgMsh2	21723828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	86	74	23	0.310810811	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon1:c.T51C:p.A17A,Ldlr:NM_001252659:exon1:c.T51C:p.A17A,Ldlr:NM_010700:exon1:c.T51C:p.A17A"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9984773	CTG	synonymous	GCT	8	GCTGCTGC	NA
M7	chr9	21739689	12A2p6	cell line	sgMsh2	21739689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	55	144	30	0.208333333	exonic	Ldlr	nonsynonymous SNV	"Ldlr:NM_001252658:exon10:c.A1402G:p.I468V,Ldlr:NM_001252659:exon10:c.A1399G:p.I467V,Ldlr:NM_010700:exon10:c.A1402G:p.I468V"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9912256	CAT	nonsynonymous	CAT	8	CATCATCA	NA
M7	chr9	22036719	12A2p6	cell line	sgMsh2	22036719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	132	0	0	NA	exonic	Elavl3	nonsynonymous SNV	Elavl3:NM_010487:exon2:c.A151G:p.T51A	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9970571	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	22058114	12A2p6	cell line	sgMsh2	22058114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	27	4	0	0	exonic	Zfp653	synonymous SNV	"Zfp653:NM_001310759:exon4:c.T855C:p.T285T,Zfp653:NM_177318:exon4:c.T855C:p.T285T"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.958459	CAG	synonymous	NA	NA	NA	NA
M7	chr9	22887892	12A2p6	cell line	sgMsh2	22887892	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	167	8	2	0.25	exonic	Bbs9	stoploss	"Bbs9:NM_001360258:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_181316:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_001360259:exon23:c.2657delA:p.*886delinsCLE*,Bbs9:NM_178415:exon23:c.2642delA:p.*881delinsCLE*"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TAG	nonsynonymous	NA	NA	NA	-1
M7	chr9	24658629	12A2p6	cell line	sgMsh2	24658629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	172	0	0	NA	exonic	Dpy19l2	nonsynonymous SNV	Dpy19l2:NM_001166207:exon9:c.A1027G:p.M343V	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9997422	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	25483163	12A2p6	cell line	sgMsh2	25483163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	74	18	6	0.333333333	exonic	Eepd1	nonsynonymous SNV	Eepd1:NM_026189:exon2:c.T722C:p.I241T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9668613	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	26768455	12A2p6	cell line	sgMsh2	26768455	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	134	0	0	NA	exonic	Glb1l2	stopgain	"Glb1l2:NM_001310768:exon12:c.C1179A:p.Y393X,Glb1l2:NM_153803:exon13:c.C1227A:p.Y409X"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.70198421	2	0.9308557	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	26825146	12A2p6	cell line	sgMsh2	26825146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	154	0	0	NA	exonic	Glb1l3	nonsynonymous SNV	Glb1l3:NM_001113323:exon17:c.T1619C:p.M540T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999678	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	26853660	12A2p6	cell line	sgMsh2	26853660	G	A	SNV	Mutect2;Vardict	2	0.045	135	0	0	NA	exonic	Glb1l3	nonsynonymous SNV	Glb1l3:NM_001113323:exon5:c.C454T:p.P152S	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.205125256	3	8.22E-09	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr9	27082519	12A2p6	cell line	sgMsh2	27082519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	117	44	19	0.431818182	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A674G:p.Y225C,Ncapd3:NM_178113:exon26:c.A3200G:p.Y1067C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.893434449	1	0.9896207	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	27319526	12A2p6	cell line	sgMsh2	27319526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	130	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon7:c.A824G:p.D275G,Igsf9b:NM_001384263:exon7:c.A824G:p.D275G,Igsf9b:NM_001384264:exon7:c.A824G:p.D275G"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998744	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	27328503	12A2p6	cell line	sgMsh2	27328503	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	48	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001384264:exon13:c.C1655A:p.T552N,Igsf9b:NM_001326702:exon14:c.C1843A:p.P615T,Igsf9b:NM_001384263:exon14:c.C1831A:p.P611T"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9870035	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr9	27331757	12A2p6	cell line	sgMsh2	27331757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	55	0	0	NA	exonic	Igsf9b	synonymous SNV	Igsf9b:NM_001326702:exon16:c.T2238C:p.T746T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.9912256	CTC	synonymous	NA	NA	NA	NA
M7	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	45	2	1	0.5	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9618382	TCC	nonsynonymous	NA	NA	NA	NA
M7	chr9	29179195	12A2p6	cell line	sgMsh2	29179195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	137	66	15	0.227272727	exonic	Ntm	nonsynonymous SNV	"Ntm:NM_001357601:exon2:c.A227G:p.Y76C,Ntm:NM_001357602:exon2:c.A227G:p.Y76C,Ntm:NM_001357593:exon3:c.A227G:p.Y76C,Ntm:NM_001357597:exon3:c.A227G:p.Y76C,Ntm:NM_001357598:exon3:c.A227G:p.Y76C,Ntm:NM_001357603:exon3:c.A155G:p.Y52C,Ntm:NM_172290:exon3:c.A227G:p.Y76C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.961403	ATA	nonsynonymous	NA	NA	NA	NA
M7	chr9	31053521	12A2p6	cell line	sgMsh2	31053521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	184	62	17	0.274193548	exonic	Zbtb44	nonsynonymous SNV	"Zbtb44:NM_001115130:exon2:c.C226T:p.H76Y,Zbtb44:NM_172765:exon2:c.C226T:p.H76Y"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8839976	TCA	nonsynonymous	NA	NA	NA	NA
M7	chr9	31327436	12A2p6	cell line	sgMsh2	31327436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	89	11	3	0.272727273	exonic	Prdm10	nonsynonymous SNV	"Prdm10:NM_001368845:exon5:c.T623C:p.I208T,Prdm10:NM_001368846:exon5:c.T623C:p.I208T,Prdm10:NM_199315:exon6:c.T623C:p.I208T"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	ATA	nonsynonymous	ATAG	8	ATAGATAG	NA
M7	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	80	15	4	0.266666667	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9978612	CGC	synonymous	NA	NA	NA	NA
M7	chr9	31426949	12A2p6	cell line	sgMsh2	31426949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	89	0	0	NA	exonic	Tmem45b	nonsynonymous SNV	Tmem45b:NM_144936:exon6:c.A733G:p.T245A	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	32260136	12A2p6	cell line	sgMsh2	32260136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	210	0	0	NA	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon13:c.A4211G:p.Y1404C,Arhgap32:NM_001195632:exon22:c.A5258G:p.Y1753C,Arhgap32:NM_001370957:exon22:c.A5138G:p.Y1713C,Arhgap32:NM_001370958:exon23:c.A5180G:p.Y1727C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9999553	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	35214258	12A2p6	cell line	sgMsh2	35214258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	224	215	29	0.134883721	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon9:c.A1117G:p.M373V	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.825059363	1	0.9385938	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	35471141	12A2p6	cell line	sgMsh2	35471141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	114	6	4	0.666666667	exonic	Cdon	nonsynonymous SNV	Cdon:NM_021339:exon9:c.A1996G:p.T666A	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.5699688	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	36432891	12A2p6	cell line	sgMsh2	36432891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	157	0	0	NA	exonic	Pate12	nonsynonymous SNV	Pate12:NM_001167586:exon2:c.C169T:p.L57F	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9865669	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr9	36863526	12A2p6	cell line	sgMsh2	36863526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	85	0	0	NA	exonic	Fez1	synonymous SNV	"Fez1:NM_001357610:exon5:c.G528A:p.Q176Q,Fez1:NM_001357611:exon5:c.G528A:p.Q176Q,Fez1:NM_001357613:exon5:c.G528A:p.Q176Q,Fez1:NM_001357614:exon5:c.G528A:p.Q176Q,Fez1:NM_183171:exon5:c.G528A:p.Q176Q,Fez1:NM_001357612:exon6:c.G528A:p.Q176Q"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.729334244	2	0.5924611	AGA	synonymous	NA	NA	NA	NA
M7	chr9	37255323	12A2p6	cell line	sgMsh2	37255323	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	33	3	0	0	exonic	Slc37a2	nonsynonymous SNV	"Slc37a2:NM_001145960:exon1:c.T35C:p.L12P,Slc37a2:NM_020258:exon1:c.T35C:p.L12P"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9700852	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	37522884	12A2p6	cell line	sgMsh2	37522884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	100	31	3	0.096774194	exonic	Msantd2	nonsynonymous SNV	Msantd2:NM_146222:exon4:c.T1022C:p.L341P	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.802267668	1	0.807358	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	99	2	2	1	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9956707	TAT	synonymous	NA	NA	NA	NA
M7	chr9	37804586	12A2p6	cell line	sgMsh2	37804586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	357	0	0	NA	exonic	Olfr876	nonsynonymous SNV	Olfr876:NM_146883:exon1:c.T674C:p.L225P	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	1.32E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	37855276	12A2p6	cell line	sgMsh2	37855276	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.242	190	0	0	NA	exonic	Olfr877	frameshift insertion	Olfr877:NM_146417:exon1:c.458dupT:p.G155Wfs*16	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	AGT	frameshift	ATGGG	11	ATGGGATGGGA	1
M7	chr9	37898061	12A2p6	cell line	sgMsh2	37898061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	160	0	0	NA	exonic	Olfr145	nonsynonymous SNV	Olfr145:NM_146313:exon1:c.T656C:p.L219P	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999771	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	38061932	12A2p6	cell line	sgMsh2	38061932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	261	0	0	NA	exonic	Olfr885	nonsynonymous SNV	Olfr885:NM_001011739:exon1:c.T611G:p.V204G	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.98004289	1	0.9999997	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	38116625	12A2p6	cell line	sgMsh2	38116625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	203	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T828C:p.Y276Y	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9972828	ATA	synonymous	NA	NA	NA	NA
M7	chr9	38179912	12A2p6	cell line	sgMsh2	38179912	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	73	0	0	NA	exonic	Olfr891	synonymous SNV	Olfr891:NM_146478:exon1:c.C910T:p.L304L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.756684278	1	0.6215007	AGT	synonymous	NA	NA	NA	NA
M7	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	239	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.989159568	1	0.9999994	TTT	synonymous	NA	NA	NA	NA
M7	chr9	38658252	12A2p6	cell line	sgMsh2	38658252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	116	0	0	NA	exonic	Olfr916	nonsynonymous SNV	Olfr916:NM_146784:exon1:c.A139C:p.I47L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999722	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	38665297	12A2p6	cell line	sgMsh2	38665297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	188	0	0	NA	exonic	Olfr917	synonymous SNV	Olfr917:NM_001011864:exon1:c.T546C:p.P182P	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999953	AAG	synonymous	G	5	GGGGG	NA
M7	chr9	38665642	12A2p6	cell line	sgMsh2	38665642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	128	0	0	NA	exonic	Olfr917	synonymous SNV	Olfr917:NM_001011864:exon1:c.C201T:p.S67S	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.779475973	1	0.6275091	AGG	synonymous	NA	NA	NA	NA
M7	chr9	38698231	12A2p6	cell line	sgMsh2	38698231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	203	0	0	NA	exonic	Olfr919	nonsynonymous SNV	Olfr919:NM_146440:exon1:c.T146C:p.M49T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.916226144	1	0.9996949	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	38723409	12A2p6	cell line	sgMsh2	38723409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	172	69	11	0.15942029	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon5:c.T512C:p.V171A,Vwa5a:NM_172767:exon6:c.T512C:p.V171A"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999884	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	38728677	12A2p6	cell line	sgMsh2	38728677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	151	76	24	0.315789474	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon10:c.T1220C:p.V407A,Vwa5a:NM_172767:exon11:c.T1220C:p.V407A"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999618	GTT	nonsynonymous	AAGTT	12	AAGTTAAGTTAA	NA
M7	chr9	38775808	12A2p6	cell line	sgMsh2	38775808	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	184	0	0	NA	exonic	Olfr921	nonsynonymous SNV	Olfr921:NM_146782:exon3:c.G552T:p.L184F	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999941	TGC	nonsynonymous	NA	NA	NA	NA
M7	chr9	38848375	12A2p6	cell line	sgMsh2	38848375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	271	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A260G:p.N87S	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9999919	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	38877830	12A2p6	cell line	sgMsh2	38877830	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	350	0	0	NA	exonic	Olfr926	nonsynonymous SNV	Olfr926:NM_146815:exon1:c.T653C:p.I218T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9999244	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	227	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.154983527	3	1	CCT	synonymous	NA	NA	NA	NA
M7	chr9	38976449	12A2p6	cell line	sgMsh2	38976449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	217	0	0	NA	exonic	Olfr933	nonsynonymous SNV	Olfr933:NM_146441:exon1:c.A772G:p.M258V	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999991	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	39184300	12A2p6	cell line	sgMsh2	39184300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	260	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.A121G:p.T41A	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	39217465	12A2p6	cell line	sgMsh2	39217465	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	197	0	0	NA	exonic	Olfr944	nonsynonymous SNV	Olfr944:NM_146507:exon1:c.T107C:p.L36P	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.150425188	3	1	CTA	nonsynonymous	ATCT	9	ATCTATCTA	NA
M7	chr9	39218204	12A2p6	cell line	sgMsh2	39218204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	171	0	0	NA	exonic	Olfr944	synonymous SNV	Olfr944:NM_146507:exon1:c.A846G:p.V282V	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999877	TAC	synonymous	NA	NA	NA	NA
M7	chr9	39257888	12A2p6	cell line	sgMsh2	39257888	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	258	0	0	NA	exonic	Olfr945	synonymous SNV	Olfr945:NM_146506:exon1:c.A792G:p.Q264Q	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.132191832	3	1	GTT	synonymous	NA	NA	NA	NA
M7	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	214	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.9999989	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	39426542	12A2p6	cell line	sgMsh2	39426542	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	144	0	0	NA	exonic	Olfr952	nonsynonymous SNV	Olfr952:NM_146503:exon1:c.C528A:p.H176Q	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999432	AGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	39484543	12A2p6	cell line	sgMsh2	39484543	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	202	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A709T:p.R237W	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.83873438	1	0.9687419	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	39596639	12A2p6	cell line	sgMsh2	39596639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	137	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon11:c.T1200C:p.T400T,AW551984:NM_001359951:exon11:c.T1200C:p.T400T,AW551984:NM_178737:exon11:c.T1200C:p.T400T"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9969832	AAG	synonymous	NA	NA	NA	NA
M7	chr9	39719434	12A2p6	cell line	sgMsh2	39719434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	265	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T206C:p.I69T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9999992	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	39737754	12A2p6	cell line	sgMsh2	39737754	A	-	Deletion	Strelka2;Vardict	2	0.3833	60	0	0	NA	exonic	Olfr150	stoploss	Olfr150:NM_146609:exon1:c.938delA:p.*313del	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	NA	NA	TAA	nonsynonymous	A	10	AAAAAAAAAA	-1
M7	chr9	39750389	12A2p6	cell line	sgMsh2	39750389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	121	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.T2C:p.M1T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.683750854	2	0.945017	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	39772552	12A2p6	cell line	sgMsh2	39772552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	363	0	0	NA	exonic	Olfr968	nonsynonymous SNV	Olfr968:NM_146612:exon1:c.G247A:p.V83M	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	1.23E-09	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr9	39772775	12A2p6	cell line	sgMsh2	39772775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	132	0	0	NA	exonic	Olfr968	synonymous SNV	Olfr968:NM_146612:exon1:c.A24G:p.G8G	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	CTC	synonymous	NA	NA	NA	NA
M7	chr9	39795557	12A2p6	cell line	sgMsh2	39795557	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	272	0	0	NA	exonic	Olfr969	frameshift deletion	Olfr969:NM_146826:exon1:c.181delT:p.L63Sfs*20	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.902551127	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7	chr9	39873441	12A2p6	cell line	sgMsh2	39873441	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	328	0	0	NA	exonic	Olfr972	synonymous SNV	Olfr972:NM_146610:exon1:c.A165T:p.L55L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	2.66E-09	TAC	synonymous	AC	8	ACACACAC	NA
M7	chr9	39873961	12A2p6	cell line	sgMsh2	39873961	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	331	0	0	NA	exonic	Olfr972	frameshift deletion	Olfr972:NM_146610:exon1:c.685delA:p.K229Nfs*56	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr9	40006446	12A2p6	cell line	sgMsh2	40006446	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	205	0	0	NA	exonic	Olfr980	nonsynonymous SNV	Olfr980:NM_147106:exon1:c.T502C:p.C168R	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	40978194	12A2p6	cell line	sgMsh2	40978194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	exonic	Crtam	nonsynonymous SNV	"Crtam:NM_001281954:exon8:c.T884C:p.L295P,Crtam:NM_019465:exon8:c.T881C:p.L294P"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9994621	CAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	111	58	16	0.275862069	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	CAG	synonymous	NA	NA	NA	NA
M7	chr9	44106252	12A2p6	cell line	sgMsh2	44106252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	108	1	1	1	exonic	Mfrp	nonsynonymous SNV	"Mfrp:NM_001190314:exon13:c.A1522G:p.S508G,Mfrp:NM_147126:exon13:c.A1540G:p.S514G"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9985199	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	44250827	12A2p6	cell line	sgMsh2	44250827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	84	0	0	NA	exonic	Pdzd3	nonsynonymous SNV	Pdzd3:NM_133226:exon3:c.T74C:p.I25T	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.948134517	1	0.993843	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	44263821	12A2p6	cell line	sgMsh2	44263821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	52	5	2	0.4	exonic	Nlrx1	synonymous SNV	"Nlrx1:NM_001163742:exon5:c.T657C:p.R219R,Nlrx1:NM_001163743:exon5:c.T657C:p.R219R,Nlrx1:NM_178420:exon5:c.T657C:p.R219R"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9896146	AAC	synonymous	NA	NA	NA	NA
M7	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	45	24	6	0.25	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9846293	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr9	44823338	12A2p6	cell line	sgMsh2	44823338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	213	38	13	0.342105263	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6206G:p.Y2069C	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.966367873	1	0.9999906	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	44849435	12A2p6	cell line	sgMsh2	44849435	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	134	26	0	0	exonic	Kmt2a	synonymous SNV	Kmt2a:NM_001357549:exon3:c.A1116G:p.Q372Q	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.255266985	3	0.9999973	GTT	synonymous	NA	NA	NA	NA
M7	chr9	45093823	12A2p6	cell line	sgMsh2	45093823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	141	0	0	NA	exonic	Jaml	nonsynonymous SNV	Jaml:NM_001005421:exon6:c.T512C:p.V171A	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999327	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	45183178	12A2p6	cell line	sgMsh2	45183178	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	101	0	0	NA	exonic	Tmprss4	nonsynonymous SNV	"Tmprss4:NM_001364528:exon5:c.G14T:p.S5I,Tmprss4:NM_145403:exon5:c.G434T:p.S145I"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.7081946	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr9	45668250	12A2p6	cell line	sgMsh2	45668250	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	30	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon5:c.G920T:p.G307V	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.9647308	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr9	45770728	12A2p6	cell line	sgMsh2	45770728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	135	35	9	0.257142857	exonic	Cep164	nonsynonymous SNV	Cep164:NM_001081373:exon27:c.T3673C:p.F1225L	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999054	AAA	nonsynonymous	NA	NA	NA	NA
M7	chr9	45916032	12A2p6	cell line	sgMsh2	45916032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	83	19	4	0.210526316	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon9:c.T1096C:p.C366R,Pcsk7:NM_008794:exon9:c.T1096C:p.C366R"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9981953	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	45944380	12A2p6	cell line	sgMsh2	45944380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	67	49	23	0.469387755	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_172257:exon17:c.A1600G:p.N534D,Sidt2:NM_001289668:exon18:c.A1663G:p.N555D,Sidt2:NM_001359653:exon18:c.A1612G:p.N538D"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	45946813	12A2p6	cell line	sgMsh2	45946813	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	115	87	0	0	exonic	Sidt2	frameshift deletion	"Sidt2:NM_001289668:exon12:c.1091delA:p.N364Mfs*59,Sidt2:NM_172257:exon12:c.1091delA:p.N364Mfs*38,Sidt2:NM_001359653:exon13:c.1103delA:p.N368Mfs*38"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.779475973	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7	chr9	45947872	12A2p6	cell line	sgMsh2	45947872	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	74	84	19	0.226190476	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_001289668:exon10:c.T979A:p.L327M,Sidt2:NM_001359653:exon10:c.T979A:p.L327M,Sidt2:NM_172257:exon10:c.T979A:p.L327M"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	46283050	12A2p6	cell line	sgMsh2	46283050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	57	12	0	0	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon1:c.T20G:p.L7R	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.988195	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	48959265	12A2p6	cell line	sgMsh2	48959265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	48	0	0	NA	exonic	Htr3b	nonsynonymous SNV	Htr3b:NM_020274:exon2:c.T137C:p.V46A	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.797709329	1	0.8113345	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	49003032	12A2p6	cell line	sgMsh2	49003032	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	242	24	0	0	exonic	Usp28	nonsynonymous SNV	"Usp28:NM_001359739:exon4:c.G310A:p.A104T,Usp28:NM_175482:exon4:c.G310A:p.A104T"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.209683595	3	1.00E-09	GGC	nonsynonymous	GCAG	8	GCAGGCAG	NA
M7	chr9	49037852	12A2p6	cell line	sgMsh2	49037852	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	114	32	7	0.21875	exonic	Usp28	nonsynonymous SNV	"Usp28:NM_175482:exon22:c.G2745T:p.K915N,Usp28:NM_001359739:exon23:c.G2841T:p.K947N"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996886	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	49268648	12A2p6	cell line	sgMsh2	49268648	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	115	0	0	NA	exonic	Gm4894	nonsynonymous SNV	Gm4894:NM_177701:exon2:c.A77T:p.E26V	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997058	GAA	nonsynonymous	NA	NA	NA	NA
M7	chr9	50740565	12A2p6	cell line	sgMsh2	50740565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	161	50	10	0.2	exonic	2310030G06Rik	nonsynonymous SNV	2310030G06Rik:NM_025865:exon4:c.A320G:p.Y107C	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999784	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	50862464	12A2p6	cell line	sgMsh2	50862464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	162	41	11	0.268292683	exonic	Ppp2r1b	nonsynonymous SNV	"Ppp2r1b:NM_001034085:exon5:c.T638C:p.V213A,Ppp2r1b:NM_001286553:exon5:c.T638C:p.V213A,Ppp2r1b:NM_028614:exon5:c.T638C:p.V213A"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999795	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	52085321	12A2p6	cell line	sgMsh2	52085321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	399	98	0.245614035	exonic	Rdx	synonymous SNV	"Rdx:NM_001104616:exon13:c.T1563C:p.N521N,Rdx:NM_009041:exon13:c.T1563C:p.N521N"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9993492	ATG	synonymous	NA	NA	NA	NA
M7	chr9	53375371	12A2p6	cell line	sgMsh2	53375371	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	153	25	4	0.16	exonic	Exph5	frameshift deletion	Exph5:NM_176846:exon6:c.3751delA:p.K1252Nfs*29	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.957251195	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr9	53425655	12A2p6	cell line	sgMsh2	53425655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	203	11	3	0.272727273	exonic	4930550C14Rik	synonymous SNV	"4930550C14Rik:NM_001376945:exon5:c.T258C:p.D86D,4930550C14Rik:NM_001376943:exon7:c.T693C:p.D231D,4930550C14Rik:NM_001376944:exon7:c.T693C:p.D231D,4930550C14Rik:NM_029247:exon7:c.T693C:p.D231D"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9938464	ATG	synonymous	NA	NA	NA	NA
M7	chr9	53500806	12A2p6	cell line	sgMsh2	53500806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	160	40	5	0.125	exonic	Atm	synonymous SNV	Atm:NM_007499:exon20:c.A2949G:p.R983R	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.847851058	1	0.9702645	GTC	synonymous	NA	NA	NA	NA
M7	chr9	53563665	12A2p6	cell line	sgMsh2	53563665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	123	86	16	0.186046512	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon13:c.A2756G:p.N919S	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	53570988	12A2p6	cell line	sgMsh2	53570988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	84	50	12	0.24	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon17:c.T3995G:p.L1332R	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	54472240	12A2p6	cell line	sgMsh2	54472240	A	G	SNV	Mutect2;Vardict	2	0.04	137	5	0	0	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon6:c.T519C:p.H173H	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.182333561	3	1.37E-09	GAT	synonymous	NA	NA	NA	NA
M7	chr9	54922287	12A2p6	cell line	sgMsh2	54922287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	61	24	5	0.208333333	exonic	Hykk	synonymous SNV	Hykk:NM_177351:exon3:c.T439C:p.L147L	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9828712	ATT	synonymous	NA	NA	NA	NA
M7	chr9	55556132	12A2p6	cell line	sgMsh2	55556132	T	C	SNV	Mutect2;Vardict	2	0.036	153	25	1	0.04	exonic	Scaper	nonsynonymous SNV	"Scaper:NM_001081341:exon31:c.A3994G:p.I1332V,Scaper:NM_001357652:exon31:c.A3976G:p.I1326V"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	56147420	12A2p6	cell line	sgMsh2	56147420	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	80	157	33	0.210191083	exonic	Tspan3	synonymous SNV	Tspan3:NM_019793:exon2:c.T222A:p.A74A	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9888718	TAG	synonymous	NA	NA	NA	NA
M7	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	714	91	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.127633493	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	173	82	20	0.243902439	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999989	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M7	chr9	56489931	12A2p6	cell line	sgMsh2	56489931	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	123	74	14	0.189189189	exonic	Hmg20a	synonymous SNV	Hmg20a:NM_025812:exon9:c.A1014C:p.R338R	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	GAG	synonymous	NA	NA	NA	NA
M7	chr9	56886067	12A2p6	cell line	sgMsh2	56886067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	78	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.A1085T:p.N362I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.6525131	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	56982712	12A2p6	cell line	sgMsh2	56982712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	59	25	5	0.2	exonic	Snupn	synonymous SNV	Snupn:NM_178374:exon9:c.T816C:p.S272S	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9456402	GTA	synonymous	NA	NA	NA	NA
M7	chr9	57096822	12A2p6	cell line	sgMsh2	57096822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	128	108	21	0.194444444	exonic	Sin3a	nonsynonymous SNV	"Sin3a:NM_001110350:exon6:c.T857C:p.V286A,Sin3a:NM_001357754:exon6:c.T857C:p.V286A,Sin3a:NM_001110351:exon7:c.T857C:p.V286A,Sin3a:NM_011378:exon7:c.T857C:p.V286A"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.784034312	1	0.6668739	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	57612601	12A2p6	cell line	sgMsh2	57612601	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	96	2	1	0.5	exonic	Lman1l	nonsynonymous SNV	Lman1l:NM_199222:exon7:c.C752T:p.T251I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	57629290	12A2p6	cell line	sgMsh2	57629290	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	44	149	44	0.295302013	exonic	Csk	nonsynonymous SNV	"Csk:NM_007783:exon6:c.A526G:p.T176A,Csk:NM_001304761:exon8:c.A526G:p.T176A"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.551559022	2	0.8492262	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	58150162	12A2p6	cell line	sgMsh2	58150162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	96	0	0	NA	exonic	Stra6	nonsynonymous SNV	"Stra6:NM_001162475:exon14:c.A1254G:p.I418M,Stra6:NM_001162476:exon14:c.A1254G:p.I418M,Stra6:NM_001162479:exon14:c.A1254G:p.I418M,Stra6:NM_009291:exon14:c.A1254G:p.I418M"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999136	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	58255017	12A2p6	cell line	sgMsh2	58255017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	67	19	2	0.105263158	exonic	Stoml1	nonsynonymous SNV	Stoml1:NM_026942:exon2:c.A217G:p.I73V	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9807111	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	58908457	12A2p6	cell line	sgMsh2	58908457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	93	267	69	0.258426966	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon16:c.A2534G:p.N845S,Neo1:NM_008684:exon16:c.A2534G:p.N845S"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989759	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	58921767	12A2p6	cell line	sgMsh2	58921767	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	84	243	15	0.061728395	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon10:c.G1848T:p.Q616H,Neo1:NM_008684:exon10:c.G1848T:p.Q616H"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	CCT	nonsynonymous	NA	NA	NA	NA
M7	chr9	58985809	12A2p6	cell line	sgMsh2	58985809	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	89	295	88	0.298305085	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon3:c.T549A:p.N183K,Neo1:NM_008684:exon3:c.T549A:p.N183K"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987153	AAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	59539836	12A2p6	cell line	sgMsh2	59539836	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	67	86	13	0.151162791	exonic	Hexa	nonsynonymous SNV	Hexa:NM_010421:exon1:c.C113T:p.T38I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	122	2552	441	0.172805643	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.943576178	1	0.9984876	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr9	59821679	12A2p6	cell line	sgMsh2	59821679	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	212	67	26	0.388059701	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon12:c.T1817G:p.L606R	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	59868201	12A2p6	cell line	sgMsh2	59868201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	200	39	2	0.051282051	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon23:c.A3094G:p.R1032G	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999976	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	62282046	12A2p6	cell line	sgMsh2	62282046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	84	0	0	NA	exonic	Spesp1	nonsynonymous SNV	Spesp1:NM_025721:exon1:c.T17C:p.L6P	9qB	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9982947	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	64212673	12A2p6	cell line	sgMsh2	64212673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	72	238	67	0.281512605	exonic	Map2k1	nonsynonymous SNV	Map2k1:NM_008927:exon3:c.G349T:p.V117L	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9966369	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr9	64235602	12A2p6	cell line	sgMsh2	64235602	T	C	SNV	Mutect2;Vardict	2	0.016	456	53	0	0	exonic	Uchl4	synonymous SNV	Uchl4:NM_033607:exon1:c.T364C:p.L122L	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.072933424	3	1	ATT	synonymous	A	5	AAAAA	NA
M7	chr9	64660479	12A2p6	cell line	sgMsh2	64660479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	58	0	0	NA	exonic	Megf11	nonsynonymous SNV	"Megf11:NM_172522:exon9:c.A1156G:p.I386V,Megf11:NM_001134399:exon10:c.A1249G:p.I417V"	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.829617702	1	0.8781563	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	64716861	12A2p6	cell line	sgMsh2	64716861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	127	603	162	0.268656716	exonic	Rab11a	synonymous SNV	Rab11a:NM_017382:exon5:c.T639C:p.C213C	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.756684278	2	0.5807635	GAC	synonymous	NA	NA	NA	NA
M7	chr9	65358704	12A2p6	cell line	sgMsh2	65358704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	76	20	4	0.2	exonic	Pdcd7	nonsynonymous SNV	Pdcd7:NM_016688:exon5:c.T1442C:p.I481T	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.988405	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	66372540	12A2p6	cell line	sgMsh2	66372540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	195	19	9	0.473684211	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon2:c.T729C:p.G243G	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999969	GTC	synonymous	NA	NA	NA	NA
M7	chr9	66445540	12A2p6	cell line	sgMsh2	66445540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	199	33	7	0.212121212	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon35:c.A6307G:p.T2103A	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999975	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	67395486	12A2p6	cell line	sgMsh2	67395486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	265	0	0	NA	exonic	Tln2	nonsynonymous SNV	Tln2:NM_001081242:exon4:c.C202T:p.R68W	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999999	CGA	nonsynonymous	NA	NA	NA	NA
M7	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	47	14	4	0.285714286	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.738450922	1	0.6543485	GGC	nonsynonymous	NA	NA	NA	NA
M7	chr9	69467368	12A2p6	cell line	sgMsh2	69467368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	162	3311	935	0.282392027	exonic	Anxa2	synonymous SNV	Anxa2:NM_007585:exon3:c.T126C:p.I42I	9qC	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9985943	TTG	synonymous	NA	NA	NA	NA
M7	chr9	70124959	12A2p6	cell line	sgMsh2	70124959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	127	8	1	0.125	exonic	Fam81a	nonsynonymous SNV	Fam81a:NM_029784:exon3:c.A250G:p.T84A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.999851	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	101	81	40	0.49382716	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	2	1	1	0.9993492	GCT	synonymous	NA	NA	NA	NA
M7	chr9	70408012	12A2p6	cell line	sgMsh2	70408012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	78	251	70	0.278884462	exonic	Ccnb2	synonymous SNV	Ccnb2:NM_007630:exon9:c.T1104C:p.Y368Y	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.997508	CAT	synonymous	NA	NA	NA	NA
M7	chr9	70419008	12A2p6	cell line	sgMsh2	70419008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	271	59	0.217712177	exonic	Ccnb2	nonsynonymous SNV	Ccnb2:NM_007630:exon2:c.T146C:p.V49A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999884	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	70626787	12A2p6	cell line	sgMsh2	70626787	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	151	49	10	0.204081633	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon5:c.A1127C:p.K376T,Mindy2:NM_172772:exon5:c.A1127C:p.K376T"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.975484551	1	0.9998859	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	71716549	12A2p6	cell line	sgMsh2	71716549	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	66	227	31	0.136563877	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon6:c.A1901T:p.Q634L,Cgnl1:NM_026599:exon6:c.A1901T:p.Q634L"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.879759432	1	0.9527753	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	72617209	12A2p6	cell line	sgMsh2	72617209	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	79	71	11	0.154929577	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A1680C:p.K560N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9977367	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	72694422	12A2p6	cell line	sgMsh2	72694422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	143	0	0	NA	exonic	Nedd4	synonymous SNV	Nedd4:NM_001357998:exon1:c.T984C:p.C328C	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999399	GTG	synonymous	TG	8	TGTGTGTG	NA
M7	chr9	73012712	12A2p6	cell line	sgMsh2	73012712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	57	108	28	0.259259259	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286544:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286545:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286546:exon8:c.A1308C:p.K436N,Ccpg1:NM_028181:exon8:c.A1608C:p.K536N,Ccpg1:NM_001359295:exon9:c.A1704C:p.K568N,Ccpg1:NM_001359296:exon9:c.A1704C:p.K568N"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9921594	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	73017490	12A2p6	cell line	sgMsh2	73017490	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	138	25	3	0.12	exonic	Pigb	synonymous SNV	Pigb:NM_018889:exon11:c.A1386T:p.A462A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.5161751	CTG	synonymous	NA	NA	NA	NA
M7	chr9	73525993	12A2p6	cell line	sgMsh2	73525993	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	81	23	1	0.043478261	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon28:c.A5905C:p.R1969R	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9979789	CTT	synonymous	NA	NA	NA	NA
M7	chr9	73694917	12A2p6	cell line	sgMsh2	73694917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	111	16	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon11:c.A4046G:p.E1349G	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9996309	TTC	nonsynonymous	CTTCT	11	CTTCTCTTCTC	NA
M7	chr9	73931436	12A2p6	cell line	sgMsh2	73931436	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	182	10	0	0	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.C2132A:p.T711N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999934	GGT	nonsynonymous	NA	NA	NA	NA
M7	chr9	73931834	12A2p6	cell line	sgMsh2	73931834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	124	19	1	0.052631579	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.T1734C:p.L578L	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.765800956	1	0.5135054	AAA	synonymous	NA	NA	NA	NA
M7	chr9	74154934	12A2p6	cell line	sgMsh2	74154934	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	142	13	0	0	exonic	Wdr72	nonsynonymous SNV	Wdr72:NM_001033500:exon12:c.C1397T:p.T466I	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.897992788	1	0.9954105	ACC	nonsynonymous	NA	NA	NA	NA
M7	chr9	74210451	12A2p6	cell line	sgMsh2	74210451	T	C	SNV	Mutect2;Vardict	2	0.043	96	6	0	0	exonic	Wdr72	nonsynonymous SNV	Wdr72:NM_001033500:exon15:c.T2480C:p.L827P	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.196008578	3	0.999999	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	75006449	12A2p6	cell line	sgMsh2	75006449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	123	4	1	0.25	exonic	Fam214a	synonymous SNV	"Fam214a:NM_153584:exon3:c.A384G:p.A128A,Fam214a:NM_001113283:exon4:c.A363G:p.A121A,Fam214a:NM_001359816:exon4:c.A363G:p.A121A"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9614565	CAC	synonymous	NA	NA	NA	NA
M7	chr9	75197715	12A2p6	cell line	sgMsh2	75197715	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	148	64	2	0.03125	exonic	Myo5a	stopgain	Myo5a:NM_010864:exon33:c.A4306T:p.K1436X	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	CAA	nonsynonymous	A	5	AAAAA	NA
M7	chr9	75197720	12A2p6	cell line	sgMsh2	75197720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	145	68	2	0.029411765	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon33:c.A4311T:p.K1437N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	AAA	nonsynonymous	A	5	AAAAA	NA
M7	chr9	76493030	12A2p6	cell line	sgMsh2	76493030	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	136	2	1	0.5	exonic	Fam83b	nonsynonymous SNV	Fam83b:NM_001045518:exon5:c.C790A:p.H264N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999106	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	76952029	12A2p6	cell line	sgMsh2	76952029	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	87	0	0	NA	exonic	Tinag	frameshift deletion	Tinag:NM_012033:exon11:c.1296delT:p.I432Mfs*21	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.765800956	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7	chr9	77032432	12A2p6	cell line	sgMsh2	77032432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	134	2	0	0	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon2:c.A410G:p.N137S	9qD	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998999	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	77961012	12A2p6	cell line	sgMsh2	77961012	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	95	167	7	0.041916168	exonic	Elovl5	frameshift deletion	Elovl5:NM_134255:exon3:c.205delA:p.N69Tfs*15	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.902551127	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7	chr9	78059630	12A2p6	cell line	sgMsh2	78059630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	105	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon3:c.A130G:p.I44V	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9994813	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	78098394	12A2p6	cell line	sgMsh2	78098394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	160	20	2	0.1	exonic	Fbxo9	nonsynonymous SNV	"Fbxo9:NM_001081490:exon5:c.A359G:p.K120R,Fbxo9:NM_023605:exon5:c.A356G:p.K119R"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.9999692	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	142	31564	7179	0.227442656	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999364	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	78688893	12A2p6	cell line	sgMsh2	78688893	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	129	0	0	NA	exonic	Cd109	nonsynonymous SNV	Cd109:NM_153098:exon21:c.T2507C:p.V836A	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.196008578	3	7.29E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Strelka2;Vardict	2	0.2391	92	185	15	0.081081081	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
M7	chr9	82025664	12A2p6	cell line	sgMsh2	82025664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	145	6	2	0.333333333	exonic	Mei4	nonsynonymous SNV	"Mei4:NM_001357479:exon4:c.A749G:p.K250R,Mei4:NM_175213:exon5:c.A1046G:p.K349R"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2727	44	101	1	0.00990099	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7	chr9	86559478	12A2p6	cell line	sgMsh2	86559478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	117	88	27	0.306818182	exonic	Pgm3	synonymous SNV	"Pgm3:NM_001163746:exon9:c.T1065C:p.H355H,Pgm3:NM_028352:exon9:c.T1065C:p.H355H"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9997373	AAT	synonymous	NA	NA	NA	NA
M7	chr9	87707833	12A2p6	cell line	sgMsh2	87707833	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	90	0	0	NA	exonic	Tbx18	nonsynonymous SNV	Tbx18:NM_023814:exon7:c.T1051A:p.Y351N	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9987861	TAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	88462325	12A2p6	cell line	sgMsh2	88462325	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	102	543	95	0.174953959	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon8:c.T775G:p.S259A,Syncrip:NM_001284328:exon9:c.T1069G:p.S357A,Syncrip:NM_019666:exon9:c.T1069G:p.S357A,Syncrip:NM_019796:exon9:c.T1069G:p.S357A"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9662451	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	88462956	12A2p6	cell line	sgMsh2	88462956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	172	417	82	0.196642686	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.A713C:p.K238T,Syncrip:NM_001284328:exon8:c.A1007C:p.K336T,Syncrip:NM_019666:exon8:c.A1007C:p.K336T,Syncrip:NM_019796:exon8:c.A1007C:p.K336T"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999884	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	88480612	12A2p6	cell line	sgMsh2	88480612	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	112	23	8	0.347826087	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001284328:exon2:c.G142A:p.V48I,Syncrip:NM_019666:exon2:c.G142A:p.V48I,Syncrip:NM_019796:exon2:c.G142A:p.V48I"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.65184248	2	0.972612	ACG	nonsynonymous	NA	NA	NA	NA
M7	chr9	88582205	12A2p6	cell line	sgMsh2	88582205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	211	0	0	NA	exonic	Trim43a	synonymous SNV	"Trim43a:NM_001034906:exon2:c.T168C:p.C56C,Trim43a:NM_001357687:exon2:c.T168C:p.C56C"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999987	GTA	synonymous	NA	NA	NA	NA
M7	chr9	89602722	12A2p6	cell line	sgMsh2	89602722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	169	0	0	NA	exonic	Minar1	synonymous SNV	Minar1:NM_153509:exon2:c.G621A:p.Q207Q	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999863	GCT	synonymous	NA	NA	NA	NA
M7	chr9	90093785	12A2p6	cell line	sgMsh2	90093785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	188	5	0	0	exonic	Morf4l1	nonsynonymous SNV	"Morf4l1:NM_024431:exon11:c.T836C:p.L279P,Morf4l1:NM_001039147:exon12:c.T953C:p.L318P,Morf4l1:NM_001357780:exon12:c.T950C:p.L317P"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999953	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	90223478	12A2p6	cell line	sgMsh2	90223478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	112	31	9	0.290322581	exonic	Tbc1d2b	synonymous SNV	Tbc1d2b:NM_194334:exon7:c.A1548T:p.R516R	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.902551127	1	0.9912797	TTC	synonymous	NA	NA	NA	NA
M7	chr9	90228941	12A2p6	cell line	sgMsh2	90228941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	64	31	6	0.193548387	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon4:c.A844G:p.K282E	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9947155	TTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	91364112	12A2p6	cell line	sgMsh2	91364112	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	123	0	0	NA	exonic	Zic1	frameshift deletion	"Zic1:NM_009573:exon1:c.906delT:p.C304Afs*77,Zic1:NM_001376941:exon2:c.906delT:p.C304Afs*77"	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr9	95461431	12A2p6	cell line	sgMsh2	95461432	TA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	116	212	42	0.198113208	exonic	U2surp	frameshift deletion	"U2surp:NM_001357977:exon26:c.1836_1837del:p.H612Qfs*27,U2surp:NM_001357975:exon27:c.2928_2929del:p.H976Qfs*27,U2surp:NM_001357976:exon27:c.1836_1837del:p.H612Qfs*27,U2surp:NM_026476:exon27:c.2931_2932del:p.H977Qfs*27,U2surp:NM_001114977:exon28:c.3063_3064del:p.H1021Qfs*27,U2surp:NM_001357974:exon28:c.3060_3061del:p.H1020Qfs*27"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	TTA	frameshift	T	5	TTTTT	-2
M7	chr9	95865695	12A2p6	cell line	sgMsh2	95865695	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	238	10	3	0.3	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon4:c.T1029G:p.D343E	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.852409397	1	0.9911785	ATT	nonsynonymous	NA	NA	NA	NA
M7	chr9	95945351	12A2p6	cell line	sgMsh2	95945351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	210	25	4	0.16	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7348G:p.S2450G	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999987	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	95945356	12A2p6	cell line	sgMsh2	95945356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	212	21	4	0.19047619	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7353C:p.R2451S	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.970926212	1	0.9999926	GAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	96177537	12A2p6	cell line	sgMsh2	96177537	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	118	9	4	0.444444444	exonic	Gk5	nonsynonymous SNV	"Gk5:NM_001368879:exon15:c.G1441A:p.A481T,Gk5:NM_177352:exon15:c.G1441A:p.A481T"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.752125939	2	0.5861305	GGC	nonsynonymous	CTGG	9	CTGGCTGGC	NA
M7	chr9	97570592	12A2p6	cell line	sgMsh2	97570592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	103	0	0	NA	exonic	Clstn2	nonsynonymous SNV	Clstn2:NM_022319:exon5:c.A761G:p.D254G	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.870642753	1	0.9709783	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	99583360	12A2p6	cell line	sgMsh2	99583360	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	82	72	22	0.305555556	exonic	Dbr1	nonsynonymous SNV	"Dbr1:NM_001368298:exon7:c.A909C:p.K303N,Dbr1:NM_031403:exon8:c.A990C:p.K330N"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9980902	AAT	nonsynonymous	A	5	AAAAA	NA
M7	chr9	99875028	12A2p6	cell line	sgMsh2	99875028	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	88	0	0	NA	exonic	Sox14	synonymous SNV	Sox14:NM_011440:exon1:c.C657T:p.I219I	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	GGA	synonymous	NA	NA	NA	NA
M7	chr9	101101410	12A2p6	cell line	sgMsh2	101101410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	154	89	23	0.258426966	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T982C:p.C328R,Msl2:NM_001379344:exon3:c.T760C:p.C254R"	9qE4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.884317771	1	0.9937904	ATG	nonsynonymous	NA	NA	NA	NA
M7	chr9	102723707	12A2p6	cell line	sgMsh2	102723707	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	37	44	8	0.181818182	exonic	Amotl2	synonymous SNV	Amotl2:NM_019764:exon3:c.A873T:p.A291A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9234474	CAG	synonymous	NA	NA	NA	NA
M7	chr9	102730061	12A2p6	cell line	sgMsh2	102730061	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.111	45	63	24	0.380952381	exonic	Amotl2	nonsynonymous SNV	Amotl2:NM_019764:exon8:c.G1968T:p.Q656H	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.505975632	2	0.9156105	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	103343982	12A2p6	cell line	sgMsh2	103343982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	71	83	16	0.192771084	exonic	Topbp1	nonsynonymous SNV	Topbp1:NM_176979:exon23:c.T3805C:p.S1269P	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9439182	GTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	104004794	12A2p6	cell line	sgMsh2	104004794	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	100	5	1	0.2	exonic	Nphp3	synonymous SNV	"Nphp3:NM_028721:exon2:c.G462A:p.A154A,Nphp3:NM_172460:exon2:c.G462A:p.A154A"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.9344595	1	0.9952361	CGG	synonymous	NA	NA	NA	NA
M7	chr9	104198723	12A2p6	cell line	sgMsh2	104198723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	157	105	25	0.238095238	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon27:c.T2886C:p.I962I,Dnajc13:NM_001359740:exon28:c.T2901C:p.I967I"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999728	CAA	synonymous	NA	NA	NA	NA
M7	chr9	104218563	12A2p6	cell line	sgMsh2	104218563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	102	96	18	0.1875	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon15:c.A1677G:p.V559V,Dnajc13:NM_001359740:exon15:c.A1677G:p.V559V"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8631756	CTA	synonymous	NA	NA	NA	NA
M7	chr9	104233596	12A2p6	cell line	sgMsh2	104233596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	200	73	12	0.164383562	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon6:c.T475C:p.F159L,Dnajc13:NM_001359740:exon6:c.T475C:p.F159L"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.834176041	1	0.9587527	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	104686510	12A2p6	cell line	sgMsh2	104686510	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	42	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon2:c.C139T:p.R47C,Cpne4:NM_001378996:exon2:c.C109T:p.R37C,Cpne4:NM_028719:exon2:c.C85T:p.R29C"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9818293	GCG	nonsynonymous	NA	NA	NA	NA
M7	chr9	105022375	12A2p6	cell line	sgMsh2	105022375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	148	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.A1310G:p.K437R,Cpne4:NM_001378996:exon14:c.A1280G:p.K427R,Cpne4:NM_028719:exon14:c.A1256G:p.K419R"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999547	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	105300330	12A2p6	cell line	sgMsh2	105300330	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	80	0	0	NA	exonic	Nek11	nonsynonymous SNV	Nek11:NM_172461:exon7:c.G721A:p.V241M	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.237033629	3	0.999813	ACA	nonsynonymous	NA	NA	NA	NA
M7	chr9	105418083	12A2p6	cell line	sgMsh2	105418083	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	197	116	6	0.051724138	exonic	Atp2c1	frameshift deletion	"Atp2c1:NM_001253831:exon25:c.2553delT:p.F851Lfs*6,Atp2c1:NM_001359823:exon25:c.2403delT:p.F801Lfs*6,Atp2c1:NM_001253834:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_175025:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_001359822:exon27:c.2463delT:p.F821Lfs*6"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.829617702	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	137	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.929901161	1	0.9985565	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	50	53	14	0.264150943	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9112247	TAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	106844234	12A2p6	cell line	sgMsh2	106844234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	159	88	18	0.204545455	exonic	Dcaf1	synonymous SNV	"Dcaf1:NM_001015507:exon9:c.T1224A:p.A408A,Dcaf1:NM_001373930:exon9:c.T1224A:p.A408A"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999758	CTG	synonymous	NA	NA	NA	NA
M7	chr9	106846756	12A2p6	cell line	sgMsh2	106846756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	145	84	17	0.202380952	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon9:c.T1223C:p.M408T,Dcaf1:NM_001015507:exon10:c.T1382C:p.M461T,Dcaf1:NM_001373930:exon10:c.T1382C:p.M461T"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999463	ATG	nonsynonymous	T	5	TTTTT	NA
M7	chr9	106978609	12A2p6	cell line	sgMsh2	106978609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	0	0	NA	exonic	Dock3	nonsynonymous SNV	Dock3:NM_153413:exon23:c.A2350G:p.T784A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998878	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	107745165	12A2p6	cell line	sgMsh2	107745165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	147	129	30	0.23255814	exonic	Rbm5	synonymous SNV	"Rbm5:NM_001359524:exon19:c.A1686G:p.Q562Q,Rbm5:NM_001359525:exon19:c.A1689G:p.Q563Q,Rbm5:NM_001359526:exon19:c.A1689G:p.Q563Q,Rbm5:NM_148930:exon19:c.A1689G:p.Q563Q"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.911667805	1	0.9977769	GTT	synonymous	NA	NA	NA	NA
M7	chr9	107767599	12A2p6	cell line	sgMsh2	107767599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	96	169	40	0.236686391	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon3:c.A127C:p.S43R,Rbm5:NM_001359525:exon3:c.A127C:p.S43R,Rbm5:NM_001359526:exon3:c.A127C:p.S43R,Rbm5:NM_148930:exon3:c.A127C:p.S43R"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.866084414	1	0.9627272	CTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	107929742	12A2p6	cell line	sgMsh2	107929742	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	99	0	0	NA	exonic	Actl11	nonsynonymous SNV	Actl11:NM_026338:exon1:c.G1263T:p.Q421H	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992711	AGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	107963385	12A2p6	cell line	sgMsh2	107963385	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	95	37	8	0.216216216	exonic	Traip	synonymous SNV	Traip:NM_011634:exon10:c.C852A:p.T284T	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9990856	CCA	synonymous	NA	NA	NA	NA
M7	chr9	108063508	12A2p6	cell line	sgMsh2	108063508	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	44	16	5	0.3125	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon23:c.T2151G:p.N717K,Rnf123:NM_032543:exon23:c.T2133G:p.N711K"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9837467	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	108083085	12A2p6	cell line	sgMsh2	108083085	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	119	1	0	0	exonic	Mst1	nonsynonymous SNV	Mst1:NM_008243:exon10:c.G1189T:p.G397C	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.939017839	1	0.9979987	GGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	108110311	12A2p6	cell line	sgMsh2	108110311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	56	0	0	NA	exonic	Bsn	synonymous SNV	Bsn:NM_007567:exon5:c.T8241C:p.T2747T	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.9914674	CAG	synonymous	NA	NA	NA	NA
M7	chr9	108113082	12A2p6	cell line	sgMsh2	108113082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	63	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon5:c.A5470G:p.T1824A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9944088	GTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	108484042	12A2p6	cell line	sgMsh2	108484042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	87	67	15	0.223880597	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon15:c.A1772G:p.N591S	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.660959158	2	0.8984214	AAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.291	64	111	16	0.144144144	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7	chr9	108563479	12A2p6	cell line	sgMsh2	108563479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	237	246	51	0.207317073	exonic	Impdh2	nonsynonymous SNV	"Impdh2:NM_001378921:exon8:c.A878G:p.K293R,Impdh2:NM_011830:exon8:c.A878G:p.K293R"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	108968614	12A2p6	cell line	sgMsh2	108968614	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	132	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon56:c.G5063C:p.G1688A	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.998276246	1	0.99988	GGA	nonsynonymous	NA	NA	NA	NA
M7	chr9	109065342	12A2p6	cell line	sgMsh2	109065342	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	74	33	4	0.121212121	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon8:c.A1516G:p.R506G	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.396575495	2	0.09579472	CTG	nonsynonymous	NA	NA	NA	NA
M7	chr9	109605393	12A2p6	cell line	sgMsh2	109605393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	199	0	0	NA	exonic	Fbxw24	nonsynonymous SNV	Fbxw24:NM_001013776:exon8:c.T1138C:p.Y380H	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.7475676	2	0.8763335	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	109688739	12A2p6	cell line	sgMsh2	109688739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	154	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon8:c.T1178A:p.V393E	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999678	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	110036791	12A2p6	cell line	sgMsh2	110036791	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	98	177	38	0.214689266	exonic	Map4	synonymous SNV	"Map4:NM_001205330:exon8:c.T1848G:p.P616P,Map4:NM_001205332:exon8:c.T1848G:p.P616P,Map4:NM_008633:exon8:c.T1848G:p.P616P"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9992286	CTT	synonymous	NA	NA	NA	NA
M7	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	149	252	63	0.25	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.856967736	1	0.9771965	GCT	nonsynonymous	NA	NA	NA	NA
M7	chr9	110373489	12A2p6	cell line	sgMsh2	110373489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	67	64	15	0.234375	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon6:c.A731G:p.H244R,Scap:NM_001103162:exon6:c.A731G:p.H244R"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9955388	CAT	nonsynonymous	NA	NA	NA	NA
M7	chr9	110511451	12A2p6	cell line	sgMsh2	110511451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	123	0	0	NA	exonic	Kif9	nonsynonymous SNV	"Kif9:NM_001163569:exon15:c.T1511C:p.F504S,Kif9:NM_010628:exon15:c.T1511C:p.F504S"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9998131	TTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	110550147	12A2p6	cell line	sgMsh2	110550147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	193	86	17	0.197674419	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T3029C:p.V1010A	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.993717907	1	0.999995	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	110633693	12A2p6	cell line	sgMsh2	110633693	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.135	40	58	9	0.155172414	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon27:c.A4303C:p.S1435R	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.615375768	2	7.43E-05	CTC	nonsynonymous	NA	NA	NA	NA
M7	chr9	111366410	12A2p6	cell line	sgMsh2	111366410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	70	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon11:c.T3501C:p.H1167H	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.770359295	1	0.6952214	ATG	synonymous	NA	NA	NA	NA
M7	chr9	111383122	12A2p6	cell line	sgMsh2	111383122	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	160	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon16:c.T5327G:p.I1776S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.88887611	1	0.9956197	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr9	111391303	12A2p6	cell line	sgMsh2	111391303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	95	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon20:c.C7107A:p.S2369S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.952692856	1	0.996555	CCT	synonymous	NA	NA	NA	NA
M7	chr9	111394320	12A2p6	cell line	sgMsh2	111394320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	170	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon22:c.A8962G:p.R2988G	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.999987	AAG	nonsynonymous	NA	NA	NA	NA
M7	chr9	113674457	12A2p6	cell line	sgMsh2	113674457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	140	320	72	0.225	exonic	Pdcd6ip	synonymous SNV	"Pdcd6ip:NM_001164677:exon10:c.T1242C:p.S414S,Pdcd6ip:NM_001164678:exon10:c.T1227C:p.S409S,Pdcd6ip:NM_011052:exon10:c.T1227C:p.S409S"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9999287	CAG	synonymous	NA	NA	NA	NA
M7	chr9	113908688	12A2p6	cell line	sgMsh2	113908688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	88	35	8	0.228571429	exonic	Clasp2	synonymous SNV	"Clasp2:NM_029633:exon29:c.T3129C:p.D1043D,Clasp2:NM_001286600:exon31:c.T3183C:p.D1061D"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	ATC	synonymous	NA	NA	NA	NA
M7	chr9	114723292	12A2p6	cell line	sgMsh2	114723292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	143	149	40	0.268456376	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon13:c.A1499C:p.D500A	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.925342822	1	0.9985896	GAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	118065266	12A2p6	cell line	sgMsh2	118065266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	75	139	38	0.273381295	exonic	Cmc1	nonsynonymous SNV	Cmc1:NM_026442:exon4:c.A283G:p.T95A	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9971617	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	118557969	12A2p6	cell line	sgMsh2	118557969	T	C	SNV	Mutect2;Vardict	2	0.036	148	62	1	0.016129032	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon15:c.T4158C:p.S1386S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.164100205	3	1.01E-09	GTC	synonymous	NA	NA	NA	NA
M7	chr9	119072565	12A2p6	cell line	sgMsh2	119072565	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	90	17	1	0.058823529	exonic	Plcd1	frameshift deletion	"Plcd1:NM_001293648:exon12:c.1890delA:p.K630Nfs*4,Plcd1:NM_019676:exon12:c.1812delA:p.K604Nfs*4"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7	chr9	119208879	12A2p6	cell line	sgMsh2	119208879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	274	0	0	NA	exonic	Slc22a13	nonsynonymous SNV	Slc22a13:NM_133980:exon1:c.A182G:p.N61S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	3.66E-08	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	119361126	12A2p6	cell line	sgMsh2	119361126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	94	9	4	0.444444444	exonic	Xylb	synonymous SNV	Xylb:NM_001033209:exon3:c.T198C:p.G66G	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.961809534	1	0.9972076	GTG	synonymous	NA	NA	NA	NA
M7	chr9	119432565	12A2p6	cell line	sgMsh2	119432565	T	C	SNV	Mutect2;Vardict	2	0.076	53	4	0	0	exonic	Acvr2b	nonsynonymous SNV	"Acvr2b:NM_007397:exon8:c.T1223C:p.I408T,Acvr2b:NM_001313757:exon9:c.T1151C:p.I384T"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.346433766	3	0.6068619	ATC	nonsynonymous	NA	NA	NA	NA
M7	chr9	119638553	12A2p6	cell line	sgMsh2	119638553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	88	0	0	NA	exonic	Scn10a	synonymous SNV	"Scn10a:NM_001205321:exon16:c.C2520T:p.V840V,Scn10a:NM_009134:exon16:c.C2520T:p.V840V"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9986404	CGA	synonymous	GAC	8	GACGACGA	NA
M7	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	59	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9929945	CCC	synonymous	NA	NA	NA	NA
M7	chr9	119954617	12A2p6	cell line	sgMsh2	119954617	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	44	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon14:c.A1764T:p.L588F	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	0.815942685	1	0.8466145	TAA	nonsynonymous	A	5	AAAAA	NA
M7	chr9	119961924	12A2p6	cell line	sgMsh2	119961924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	35	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon20:c.A2735G:p.Y912C	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.973208	TAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	121208159	12A2p6	cell line	sgMsh2	121208159	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	87	1	0	0	exonic	Ulk4	stopgain	Ulk4:NM_177589:exon18:c.C1762T:p.Q588X	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9985612	TGG	nonsynonymous	NA	NA	NA	NA
M7	chr9	121584218	12A2p6	cell line	sgMsh2	121584218	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	92	0	0	NA	exonic	Lyzl4	nonsynonymous SNV	"Lyzl4:NM_001357346:exon3:c.T143C:p.V48A,Lyzl4:NM_001382835:exon3:c.T143C:p.V48A,Lyzl4:NM_026915:exon4:c.T143C:p.V48A"	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9989161	CAC	nonsynonymous	NA	NA	NA	NA
M7	chr9	121690387	12A2p6	cell line	sgMsh2	121690387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	76	20	3	0.15	exonic	Sec22c	synonymous SNV	"Sec22c:NM_001164562:exon4:c.T375C:p.H125H,Sec22c:NM_178677:exon5:c.T375C:p.H125H"	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9973179	AAT	synonymous	NA	NA	NA	NA
M7	chr9	121915930	12A2p6	cell line	sgMsh2	121915930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	74	0	0	NA	exonic	Cyp8b1	nonsynonymous SNV	Cyp8b1:NM_010012:exon1:c.A335G:p.Y112C	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.102505121	NA	1	1	1	0.9969966	GTA	nonsynonymous	NA	NA	NA	NA
M7	chr9	122253124	12A2p6	cell line	sgMsh2	122253124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	36	40	16	0.4	exonic	Ano10	nonsynonymous SNV	"Ano10:NM_001271873:exon10:c.A1306G:p.T436A,Ano10:NM_133979:exon10:c.A1480G:p.T494A"	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.102505121	NA	1	1	1	0.9746481	GTT	nonsynonymous	NA	NA	NA	NA
M7	chr9	122263740	12A2p6	cell line	sgMsh2	122263740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	96	55	12	0.218181818	exonic	Ano10	synonymous SNV	"Ano10:NM_001271873:exon5:c.T522C:p.H174H,Ano10:NM_133979:exon5:c.T522C:p.H174H"	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.102505121	NA	1	1	1	0.999136	CAT	synonymous	NA	NA	NA	NA
M7	chr9	123002099	12A2p6	cell line	sgMsh2	123002099	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	153	30	3	0.1	exonic	Kif15	frameshift deletion	Kif15:NM_010620:exon24:c.2921delA:p.K975Sfs*13	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chr9	123582251	12A2p6	cell line	sgMsh2	123582251	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	83	103	0	0	exonic	Sacm1l	frameshift deletion	Sacm1l:NM_030692:exon14:c.1104delT:p.L370fs*0	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.102505121	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chrX	6083315	12A2p6	cell line	sgMsh2	6083315	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	20	0	0	NA	exonic	Ezhip	nonsynonymous SNV	"Ezhip:NM_001033211:exon1:c.G8A:p.S3N,Ezhip:NM_001166433:exon1:c.G8A:p.S3N"	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M7	chrX	7573266	12A2p6	cell line	sgMsh2	7573266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	16	9	5	0.555555556	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.T983C:p.M328T,Ppp1r3f:NM_138605:exon1:c.T983C:p.M328T"	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	7608995	12A2p6	cell line	sgMsh2	7608995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	55	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon2:c.A235G:p.N79D	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAA	nonsynonymous	NA	NA	NA	NA
M7	chrX	7676186	12A2p6	cell line	sgMsh2	7676186	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.431	55	1	1	1	exonic	Magix	nonsynonymous SNV	Magix:NM_018832:exon4:c.G430A:p.G144R	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M7	chrX	12604926	12A2p6	cell line	sgMsh2	12604926	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	116	155	67	0.432258065	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon4:c.A363T:p.E121D	XqA1.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M7	chrX	16734152	12A2p6	cell line	sgMsh2	16734152	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	51	57	27	0.473684211	exonic	Maob	synonymous SNV	Maob:NM_172778:exon7:c.G690A:p.K230K	XqA1.2	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M7	chrX	20517466	12A2p6	cell line	sgMsh2	20517466	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	70	26	10	0.384615385	exonic	Jade3	nonsynonymous SNV	"Jade3:NM_199317:exon13:c.T2045G:p.V682G,Jade3:NM_001289684:exon14:c.T1733G:p.V578G"	XqA1.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	20644940	12A2p6	cell line	sgMsh2	20644940	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	58	24	4	0.166666667	exonic	Rbm10	nonsynonymous SNV	"Rbm10:NM_001358905:exon7:c.A317T:p.Q106L,Rbm10:NM_001167776:exon8:c.A569T:p.Q190L,Rbm10:NM_001358904:exon8:c.A569T:p.Q190L,Rbm10:NM_001167775:exon9:c.A800T:p.Q267L,Rbm10:NM_001358903:exon9:c.A800T:p.Q267L,Rbm10:NM_145627:exon9:c.A800T:p.Q267L"	XqA1.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	33313672	12A2p6	cell line	sgMsh2	33313672	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.533	13	0	0	NA	exonic	Btbd35f12	frameshift deletion	Btbd35f12:NM_001099333:exon1:c.250delT:p.L85Wfs*45	XqA3.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7	chrX	33701137	12A2p6	cell line	sgMsh2	33701137	T	C	SNV	Mutect2;MuSe;Vardict	3	0.53	15	0	0	NA	exonic	Btbd35f14	nonsynonymous SNV	Btbd35f14:NM_001145038:exon1:c.A1160G:p.D387G	XqA3.2	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M7	chrX	47811248	12A2p6	cell line	sgMsh2	47811248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	41	78	31	0.397435897	exonic	Smarca1	synonymous SNV	"Smarca1:NM_001290708:exon23:c.T3027C:p.N1009N,Smarca1:NM_001358618:exon23:c.T3012C:p.N1004N,Smarca1:NM_001358619:exon23:c.T3027C:p.N1009N,Smarca1:NM_053123:exon23:c.T3027C:p.N1009N"	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7	chrX	48263593	12A2p6	cell line	sgMsh2	48263593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	44	42	20	0.476190476	exonic	Utp14a	synonymous SNV	Utp14a:NM_028276:exon6:c.T498C:p.S166S	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7	chrX	48263598	12A2p6	cell line	sgMsh2	48263598	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	44	40	21	0.525	exonic	Utp14a	nonsynonymous SNV	Utp14a:NM_028276:exon6:c.T503A:p.F168Y	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	48378995	12A2p6	cell line	sgMsh2	48378995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	50	63	26	0.412698413	exonic	Bcorl1	nonsynonymous SNV	Bcorl1:NM_178782:exon8:c.A3740T:p.Q1247L	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	48384051	12A2p6	cell line	sgMsh2	48384051	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	34	77	40	0.519480519	exonic	Bcorl1	nonsynonymous SNV	Bcorl1:NM_178782:exon9:c.T4205C:p.L1402P	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chrX	48519719	12A2p6	cell line	sgMsh2	48519719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.503	103	0	0	NA	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon1:c.T119G:p.I40S	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M7	chrX	48550245	12A2p6	cell line	sgMsh2	48550245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.607	87	51	17	0.333333333	exonic	Zfp280c	nonsynonymous SNV	"Zfp280c:NM_001166650:exon14:c.A1663G:p.T555A,Zfp280c:NM_153532:exon14:c.A1663G:p.T555A,Zfp280c:NM_001166648:exon15:c.A1663G:p.T555A,Zfp280c:NM_001166649:exon15:c.A1636G:p.T546A,Zfp280c:NM_001358792:exon16:c.A1594G:p.T532A"	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	48872877	12A2p6	cell line	sgMsh2	48872877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	63	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A958G:p.T320A	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	48872904	12A2p6	cell line	sgMsh2	48872904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	64	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A931G:p.S311G	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	48875321	12A2p6	cell line	sgMsh2	48875321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	29	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon5:c.A500G:p.N167S	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M7	chrX	49051768	12A2p6	cell line	sgMsh2	49051768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	127	34	16	0.470588235	exonic	Enox2	synonymous SNV	"Enox2:NM_001271448:exon8:c.A978G:p.Q326Q,Enox2:NM_001271447:exon9:c.A978G:p.Q326Q,Enox2:NM_001271449:exon9:c.A978G:p.Q326Q,Enox2:NM_001271450:exon9:c.A978G:p.Q326Q,Enox2:NM_001271451:exon9:c.A978G:p.Q326Q,Enox2:NM_145951:exon9:c.A978G:p.Q326Q"	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M7	chrX	49683537	12A2p6	cell line	sgMsh2	49683537	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	68	0	0	NA	exonic	Olfr1320	nonsynonymous SNV	Olfr1320:NM_207240:exon1:c.G34A:p.V12M	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M7	chrX	49885568	12A2p6	cell line	sgMsh2	49885568	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.468	66	0	0	NA	exonic	Olfr1322	frameshift insertion	Olfr1322:NM_001011794:exon1:c.833_834insA:p.A279Cfs*33	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	frameshift	NA	NA	NA	1
M7	chrX	52054518	12A2p6	cell line	sgMsh2	52054518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	31	0	0	NA	exonic	Gpc4	nonsynonymous SNV	Gpc4:NM_008150:exon7:c.T1220C:p.V407A	XqA5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	56661300	12A2p6	cell line	sgMsh2	56661300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.559	86	30	8	0.266666667	exonic	Slc9a6	nonsynonymous SNV	"Slc9a6:NM_172780:exon16:c.T1961C:p.M654T,Slc9a6:NM_001358861:exon17:c.T1802C:p.M601T"	XqA6	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7	chrX	57304585	12A2p6	cell line	sgMsh2	57304585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	52	0	0	NA	exonic	Arhgef6	synonymous SNV	Arhgef6:NM_152801:exon3:c.T387C:p.A129A	XqA6	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M7	chrX	61185286	12A2p6	cell line	sgMsh2	61185286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	279	0	0	NA	exonic	Cdr1	synonymous SNV	Cdr1:NM_001166658:exon1:c.G273T:p.S91S	XqA6	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M7	chrX	64271890	12A2p6	cell line	sgMsh2	64271890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	105	0	0	NA	exonic	Slitrk4	synonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1170G:p.K390K,Slitrk4:NM_178740:exon3:c.A1170G:p.K390K,Slitrk4:NM_001365111:exon4:c.A1170G:p.K390K"	XqA7.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7	chrX	67920364	12A2p6	cell line	sgMsh2	67920364	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	129	0	0	NA	exonic	4933436I01Rik	stopgain	4933436I01Rik:NM_025763:exon2:c.C888A:p.Y296X	XqA7.1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AGT	nonsynonymous	NA	NA	NA	NA
M7	chrX	73774456	12A2p6	cell line	sgMsh2	73774456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	61	0	0	NA	exonic	Srpk3	synonymous SNV	Srpk3:NM_019684:exon1:c.T6C:p.S2S	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M7	chrX	73953464	12A2p6	cell line	sgMsh2	73953466	GCA	-	Deletion	Strelka2;Vardict	2	0.4286	35	71	20	0.281690141	exonic	Hcfc1	nonframeshift deletion	Hcfc1:NM_008224:exon10:c.1662_1664del:p.A555del	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGC	inframe	GCA	17	GCAGCAGCAGCAGCAGC	-3
M7	chrX	74273681	12A2p6	cell line	sgMsh2	74273681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	67	43	17	0.395348837	exonic	Dnase1l1	nonsynonymous SNV	"Dnase1l1:NM_001370787:exon7:c.T701G:p.I234S,Dnase1l1:NM_001172154:exon8:c.T779G:p.I260S,Dnase1l1:NM_027109:exon8:c.T779G:p.I260S"	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	74337470	12A2p6	cell line	sgMsh2	74337470	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	145	23	0	0	exonic	Plxna3	nonsynonymous SNV	"Plxna3:NM_001358129:exon18:c.G3175A:p.A1059T,Plxna3:NM_008883:exon18:c.G3175A:p.A1059T"	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M7	chrX	74411431	12A2p6	cell line	sgMsh2	74411431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	109	152	71	0.467105263	exonic	G6pdx	nonsynonymous SNV	G6pdx:NM_008062:exon9:c.A878G:p.K293R	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	74640741	12A2p6	cell line	sgMsh2	74640741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	86	0	0	NA	exonic	Gm5640	synonymous SNV	Gm5640:NM_001099302:exon4:c.A738G:p.K246K	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7	chrX	75287087	12A2p6	cell line	sgMsh2	75287087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	66	2	0	0	exonic	F8	nonsynonymous SNV	"F8:NM_001161373:exon13:c.A3196G:p.N1066D,F8:NM_001161374:exon13:c.A3196G:p.N1066D,F8:NM_007977:exon14:c.A3406G:p.N1136D"	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	75409563	12A2p6	cell line	sgMsh2	75409563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.814	24	7	6	0.857142857	exonic	Cmc4	nonsynonymous SNV	"Cmc4:NM_010839:exon2:c.T41C:p.I14T,Cmc4:NM_001294277:exon3:c.T41C:p.I14T"	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	75791080	12A2p6	cell line	sgMsh2	75791080	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.089	71	553	36	0.065099458	exonic	Pls3	nonsynonymous SNV	"Pls3:NM_001166453:exon15:c.A1642G:p.T548A,Pls3:NM_001166454:exon15:c.A1642G:p.T548A,Pls3:NM_145629:exon15:c.A1642G:p.T548A,Pls3:NM_001346519:exon16:c.A1669G:p.T557A,Pls3:NM_001346520:exon16:c.A1669G:p.T557A"	XqA7.3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M7	chrX	78738575	12A2p6	cell line	sgMsh2	78738575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	66	0	0	NA	exonic	Fam47c	synonymous SNV	Fam47c:NM_001164739:exon1:c.T762C:p.H254H	XqB	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
M7	chrX	79505277	12A2p6	cell line	sgMsh2	79505277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.534	65	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon8:c.T1203C:p.L401L	XqB	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAA	synonymous	AAGT	8	AAGTAAGT	NA
M7	chrX	81071088	12A2p6	cell line	sgMsh2	81071088	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	22	0	0	NA	exonic	Tmem47	nonsynonymous SNV	Tmem47:NM_138751:exon1:c.C154A:p.L52M	XqB	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M7	chrX	84474168	12A2p6	cell line	sgMsh2	84474168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	27	0	0	NA	exonic	Dmd	synonymous SNV	Dmd:NM_007868:exon51:c.T7323A:p.S2441S	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M7	chrX	85776446	12A2p6	cell line	sgMsh2	85776446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	40	63	34	0.53968254	exonic	Gk	nonsynonymous SNV	"Gk:NM_001294138:exon1:c.A58G:p.T20A,Gk:NM_001294140:exon1:c.A58G:p.T20A,Gk:NM_001331046:exon1:c.A58G:p.T20A,Gk:NM_008194:exon1:c.A58G:p.T20A,Gk:NM_212444:exon1:c.A58G:p.T20A"	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Vardict	2	0.06	67	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M7	chrX	89404698	12A2p6	cell line	sgMsh2	89404698	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	68	0	0	NA	exonic	Dcaf8l	nonsynonymous SNV	Dcaf8l:NM_008821:exon12:c.A1824T:p.E608D	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M7	chrX	89404703	12A2p6	cell line	sgMsh2	89404703	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	71	0	0	NA	exonic	Dcaf8l	nonsynonymous SNV	Dcaf8l:NM_008821:exon12:c.A1819G:p.S607G	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7	chrX	89405385	12A2p6	cell line	sgMsh2	89405385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	102	0	0	NA	exonic	Dcaf8l	synonymous SNV	Dcaf8l:NM_008821:exon12:c.A1137G:p.V379V	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
M7	chrX	89753239	12A2p6	cell line	sgMsh2	89753239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	93	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.T676C:p.Y226H	XqC1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7	chrX	92119992	12A2p6	cell line	sgMsh2	92119992	T	C	SNV	Mutect2;Vardict	2	0.046	91	0	0	NA	exonic	Mageb18	nonsynonymous SNV	Mageb18:NM_173783:exon5:c.A643G:p.R215G	XqC2	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	104	8	3	0.375	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M7	chrX	94536944	12A2p6	cell line	sgMsh2	94536944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	107	489	272	0.556237219	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon11:c.A1880G:p.Y627C	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7	chrX	94538842	12A2p6	cell line	sgMsh2	94538842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	59	191	84	0.439790576	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon4:c.A1178G:p.Q393R	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M7	chrX	95471452	12A2p6	cell line	sgMsh2	95471452	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	120	0	0	NA	exonic	Asb12	synonymous SNV	"Asb12:NM_080858:exon2:c.T207C:p.R69R,Asb12:NM_001313743:exon4:c.T207C:p.R69R"	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M7	chrX	95926565	12A2p6	cell line	sgMsh2	95926565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	48	2	1	0.5	exonic	Zc3h12b	nonsynonymous SNV	Zc3h12b:NM_001034907:exon9:c.A1103G:p.Y368C	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	99467373	12A2p6	cell line	sgMsh2	99467373	T	C	SNV	Mutect2;Vardict	2	0.067	65	314	4	0.012738854	exonic	Pja1	nonsynonymous SNV	"Pja1:NM_001083110:exon2:c.A929G:p.Y310C,Pja1:NM_001290555:exon2:c.A1040G:p.Y347C,Pja1:NM_001290556:exon3:c.A389G:p.Y130C,Pja1:NM_008853:exon3:c.A380G:p.Y127C"	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	100506021	12A2p6	cell line	sgMsh2	100506021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	107	287	129	0.449477352	exonic	Igbp1	synonymous SNV	Igbp1:NM_008784:exon5:c.A843G:p.L281L	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M7	chrX	100626574	12A2p6	cell line	sgMsh2	100626574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	25	23	8	0.347826087	exonic	Kif4	nonsynonymous SNV	Kif4:NM_008446:exon1:c.C106A:p.P36T	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
M7	chrX	100718024	12A2p6	cell line	sgMsh2	100718024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	76	37	15	0.405405405	exonic	Kif4	nonsynonymous SNV	Kif4:NM_008446:exon26:c.A3067G:p.I1023V	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7	chrX	102069453	12A2p6	cell line	sgMsh2	102069453	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	44	4	1	0.25	exonic	Rtl5	synonymous SNV	Rtl5:NM_001278534:exon1:c.G1410A:p.E470E	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M7	chrX	104086520	12A2p6	cell line	sgMsh2	104086520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	87	55	25	0.454545455	exonic	Nexmif	nonsynonymous SNV	Nexmif:NM_001077354:exon4:c.A1790G:p.N597S	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTT	nonsynonymous	T	5	TTTTT	NA
M7	chrX	105818050	12A2p6	cell line	sgMsh2	105818050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	36	129	50	0.387596899	exonic	Atrx	synonymous SNV	Atrx:NM_009530:exon30:c.T6630C:p.D2210D	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7	chrX	106930585	12A2p6	cell line	sgMsh2	106930585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	76	6	4	0.666666667	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.G374A:p.S125N	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M7	chrX	106931045	12A2p6	cell line	sgMsh2	106931045	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	78	6	4	0.666666667	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.A834C:p.Q278H	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	107946286	12A2p6	cell line	sgMsh2	107946286	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	111	0	0	NA	exonic	Gm732	synonymous SNV	Gm732:NM_001033252:exon2:c.T1020A:p.S340S	XqD	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M7	chrX	112119806	12A2p6	cell line	sgMsh2	112119806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.534	105	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A1968T:p.K656N	XqE1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	112627170	12A2p6	cell line	sgMsh2	112627170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	46	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_177747:exon6:c.G917A:p.S306N,Zfp711:NM_001381898:exon7:c.G917A:p.S306N"	XqE1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M7	chrX	112632850	12A2p6	cell line	sgMsh2	112632850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	63	3	3	1	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_001381900:exon8:c.A1577G:p.H526R,Zfp711:NM_001381899:exon9:c.A1577G:p.H526R,Zfp711:NM_177747:exon9:c.A1712G:p.H571R,Zfp711:NM_001381898:exon10:c.A1712G:p.H571R"	XqE1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	112656104	12A2p6	cell line	sgMsh2	112656104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	155	0	0	NA	exonic	Pof1b	synonymous SNV	Pof1b:NM_181579:exon9:c.T936C:p.I312I	XqE1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
M7	chrX	120400633	12A2p6	cell line	sgMsh2	120400633	T	C	SNV	Mutect2;Vardict	2	0.048	95	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271809:exon3:c.T1772C:p.L591P,Pcdh11x:NM_001271810:exon3:c.T1772C:p.L591P"	XqE2	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	130289939	12A2p6	cell line	sgMsh2	130289939	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	49	48	21	0.4375	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon25:c.A3098T:p.E1033V	XqE3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	134605993	12A2p6	cell line	sgMsh2	134605993	T	C	SNV	Mutect2;Vardict	2	0.04	105	308	0	0	exonic	Hnrnph2	synonymous SNV	"Hnrnph2:NM_001313716:exon3:c.T1086C:p.N362N,Hnrnph2:NM_001313717:exon3:c.T1086C:p.N362N,Hnrnph2:NM_019868:exon4:c.T1086C:p.N362N"	XqE3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
M7	chrX	135587297	12A2p6	cell line	sgMsh2	135587297	T	C	SNV	Mutect2;Vardict	2	0.082	84	0	0	NA	exonic	Nxf7	nonsynonymous SNV	"Nxf7:NM_001379677:exon11:c.A935G:p.Q312R,Nxf7:NM_130888:exon12:c.A965G:p.Q322R"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7	chrX	135613266	12A2p6	cell line	sgMsh2	135613266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	110	0	0	NA	exonic	Prame	nonsynonymous SNV	Prame:NM_029459:exon10:c.G1273A:p.E425K	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
M7	chrX	135801434	12A2p6	cell line	sgMsh2	135801434	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	72	18	2	0.111111111	exonic	Gprasp1	nonsynonymous SNV	"Gprasp1:NM_001004359:exon10:c.C2375A:p.A792D,Gprasp1:NM_001005385:exon10:c.C2375A:p.A792D,Gprasp1:NM_026081:exon11:c.C2375A:p.A792D"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M7	chrX	135842030	12A2p6	cell line	sgMsh2	135842030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	25	0	0	NA	exonic	Gprasp2	nonsynonymous SNV	"Gprasp2:NM_001359371:exon6:c.C137T:p.A46V,Gprasp2:NM_001163015:exon7:c.C137T:p.A46V,Gprasp2:NM_001163016:exon7:c.C137T:p.A46V,Gprasp2:NM_001163017:exon7:c.C137T:p.A46V"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M7	chrX	136033961	12A2p6	cell line	sgMsh2	136033961	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	55	0	0	NA	exonic	Arxes1	synonymous SNV	Arxes1:NM_029541:exon1:c.G456A:p.P152P	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CGA	synonymous	NA	NA	NA	NA
M7	chrX	136076062	12A2p6	cell line	sgMsh2	136076062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	90	0	0	NA	exonic	Nxf3	nonsynonymous SNV	Nxf3:NM_001024141:exon12:c.A1028G:p.H343R	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7	chrX	136139984	12A2p6	cell line	sgMsh2	136139984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	52	2	0	0	exonic	Bex4	nonsynonymous SNV	"Bex4:NM_001359569:exon3:c.A125G:p.N42S,Bex4:NM_001359570:exon3:c.A125G:p.N42S,Bex4:NM_212457:exon3:c.A125G:p.N42S"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	136214247	12A2p6	cell line	sgMsh2	136214247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	96	0	0	NA	exonic	Bex1	nonsynonymous SNV	Bex1:NM_009052:exon3:c.T332C:p.V111A	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	nonsynonymous	CCGC	8	CCGCCCGC	NA
M7	chrX	136526611	12A2p6	cell line	sgMsh2	136526611	A	G	SNV	Mutect2;Vardict	2	0.044	199	0	0	NA	exonic	Kir3dl1	nonsynonymous SNV	"Kir3dl1:NM_001310690:exon3:c.A295G:p.T99A,Kir3dl1:NM_177749:exon4:c.A574G:p.T192A"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	136832106	12A2p6	cell line	sgMsh2	136832106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	52	2	2	1	exonic	Plp1	synonymous SNV	"Plp1:NM_001290561:exon3:c.A345T:p.A115A,Plp1:NM_011123:exon3:c.A345T:p.A115A,Plp1:NM_001359117:exon4:c.A345T:p.A115A,Plp1:NM_001359118:exon4:c.A345T:p.A115A,Plp1:NM_001359120:exon4:c.A345T:p.A115A,Plp1:NM_001359119:exon5:c.A345T:p.A115A"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M7	chrX	136861391	12A2p6	cell line	sgMsh2	136861391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	81	0	0	NA	exonic	Rab9b	nonsynonymous SNV	Rab9b:NM_176971:exon3:c.T259C:p.F87L	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	136995740	12A2p6	cell line	sgMsh2	136995740	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.094	68	3	0	0	exonic	Zcchc18	nonsynonymous SNV	"Zcchc18:NM_001035510:exon2:c.G1103A:p.G368D,Zcchc18:NM_001035509:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358439:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358440:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358441:exon4:c.G1103A:p.G368D,Zcchc18:NM_025893:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358437:exon5:c.G1103A:p.G368D"	XqF1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M7	chrX	149617170	12A2p6	cell line	sgMsh2	149617170	A	G	SNV	Mutect2;Vardict	2	0.036	178	0	0	NA	exonic	Gm10439	nonsynonymous SNV	Gm10439:NM_001037716:exon4:c.A1034G:p.Q345R	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	151210902	12A2p6	cell line	sgMsh2	151210902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	100	3	1	0.333333333	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon4:c.T958C:p.Y320H,Wnk3:NM_001271679:exon4:c.T958C:p.Y320H"	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7	chrX	153392828	12A2p6	cell line	sgMsh2	153392828	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	20	2	1	0.5	exonic	Klf8	nonsynonymous SNV	"Klf8:NM_173780:exon7:c.A1028T:p.D343V,Klf8:NM_001357183:exon8:c.A1028T:p.D343V"	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	155054380	12A2p6	cell line	sgMsh2	155054380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	255	0	0	NA	exonic	Magea5	synonymous SNV	Magea5:NM_020018:exon3:c.T15C:p.H5H	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7	chrX	155574712	12A2p6	cell line	sgMsh2	155574712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	80	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon3:c.A1496G:p.Y499C	XqF3	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7	chrX	160132239	12A2p6	cell line	sgMsh2	160132239	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	41	301	7	0.023255814	exonic	Pdha1	nonsynonymous SNV	Pdha1:NM_008810:exon3:c.T121G:p.C41G	XqF4	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	161841198	12A2p6	cell line	sgMsh2	161841198	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	109	2	0	0	exonic	Nhs	nonsynonymous SNV	"Nhs:NM_001081052:exon6:c.A3154G:p.S1052G,Nhs:NM_001290526:exon7:c.A3217G:p.S1073G"	XqF4	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M7	chrX	163939348	12A2p6	cell line	sgMsh2	163939348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	72	40	17	0.425	exonic	Zrsr2	nonsynonymous SNV	Zrsr2:NM_009453:exon10:c.T907C:p.C303R	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M7	chrX	164162297	12A2p6	cell line	sgMsh2	164162297	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	107	0	0	NA	exonic	Ace2	nonsynonymous SNV	"Ace2:NM_027286:exon6:c.A713C:p.E238A,Ace2:NM_001130513:exon7:c.A713C:p.E238A"	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7	chrX	166427251	12A2p6	cell line	sgMsh2	166427251	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.473	38	14	1	0.071428571	exonic	Ofd1	frameshift deletion	Ofd1:NM_177429:exon7:c.577delT:p.S193Pfs*2	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7	chrX	166568517	12A2p6	cell line	sgMsh2	166568517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	71	0	0	NA	exonic	Egfl6	nonsynonymous SNV	Egfl6:NM_019397:exon2:c.T73C:p.W25R	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	167306156	12A2p6	cell line	sgMsh2	167306156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	126	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.T2333C:p.M778T,Tlr7:NM_133211:exon3:c.T2333C:p.M778T,Tlr7:NM_001290756:exon4:c.T2333C:p.M778T,Tlr7:NM_001290758:exon4:c.T2342C:p.M781T,Tlr7:NM_001290755:exon5:c.T2333C:p.M778T"	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7	chrX	169253600	12A2p6	cell line	sgMsh2	169253600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	77	74	36	0.486486486	exonic	Arhgap6	synonymous SNV	"Arhgap6:NM_001287530:exon6:c.C726T:p.F242F,Arhgap6:NM_009707:exon6:c.C1302T:p.F434F,Arhgap6:NM_178754:exon6:c.C756T:p.F252F"	XqF5	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M7	chrY	1016118	12A2p6	cell line	sgMsh2	1016118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	88	180	74	0.411111111	exonic	Eif2s3y	synonymous SNV	"Eif2s3y:NM_001357094:exon6:c.A162G:p.E54E,Eif2s3y:NM_012011:exon7:c.A699G:p.E233E"	YqA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M7	chrY	1197294	12A2p6	cell line	sgMsh2	1197294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	88	55	25	0.454545455	exonic	Uty	nonsynonymous SNV	"Uty:NM_001326682:exon6:c.T458C:p.V153A,Uty:NM_001326683:exon6:c.T272C:p.V91A,Uty:NM_009484:exon6:c.T461C:p.V154A"	YqA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7	chrY	1279493	12A2p6	cell line	sgMsh2	1279493	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	82	96	47	0.489583333	exonic	Ddx3y	nonsynonymous SNV	Ddx3y:NM_012008:exon5:c.A370T:p.S124C	YqA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7	chrY	1367117	12A2p6	cell line	sgMsh2	1367117	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	75	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon22:c.A2969G:p.H990R	YqA1	NA	NA	NA	NA	0.9	4.102505121	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	4346640	12A2p6	cell line	sgMsh2	4346640	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	174	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G4248T:p.E1416D	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999923	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	4347145	12A2p6	cell line	sgMsh2	4347145	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	195	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.C3743A:p.P1248H	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.962555619	1	0.9999774	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	4349292	12A2p6	cell line	sgMsh2	4349292	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	449	0	0	NA	exonic	Rp1	nonsynonymous SNV	Rp1:NM_011283:exon4:c.G1596T:p.Q532H	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	1.00E-09	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	4349478	12A2p6	cell line	sgMsh2	4349478	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	222	0	0	NA	exonic	Rp1	synonymous SNV	Rp1:NM_011283:exon4:c.G1410A:p.E470E	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.98591862	1	0.9999986	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr1	4352795	12A2p6	cell line	sgMsh2	4352795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	113	0	0	NA	exonic	Rp1	nonsynonymous SNV	"Rp1:NM_001195662:exon2:c.A61G:p.M21V,Rp1:NM_001370921:exon2:c.A31G:p.M11V,Rp1:NM_011283:exon2:c.A31G:p.M11V"	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997671	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	4830313	12A2p6	cell line	sgMsh2	4830313	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	204	0	0	NA	exonic	Lypla1	synonymous SNV	"Lypla1:NM_001355712:exon4:c.T213C:p.S71S,Lypla1:NM_008866:exon4:c.T213C:p.S71S"	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.285028606	3	1.38E-08	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	5916369	12A2p6	cell line	sgMsh2	5916369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Npbwr1	nonsynonymous SNV	Npbwr1:NM_010342:exon1:c.T925C:p.Y309H	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9969573	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	6802738	12A2p6	cell line	sgMsh2	6802738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	84	0	0	NA	exonic	St18	synonymous SNV	"St18:NM_173868:exon6:c.A696G:p.E232E,St18:NM_001244693:exon7:c.A696G:p.E232E,St18:NM_001244692:exon8:c.A696G:p.E232E"	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9988219	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr1	6855401	12A2p6	cell line	sgMsh2	6855401	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	185	0	0	NA	exonic	St18	nonsynonymous SNV	"St18:NM_173868:exon20:c.G2782A:p.D928N,St18:NM_001244693:exon21:c.G2782A:p.D928N,St18:NM_001244692:exon22:c.G2782A:p.D928N"	1qA1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999958	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	162	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.999985	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	9687678	12A2p6	cell line	sgMsh2	9687678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	162	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.A395G:p.H132R,Mybl1:NM_008651:exon5:c.A395G:p.H132R"	1qA2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.859758417	1	0.9836516	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	10163719	12A2p6	cell line	sgMsh2	10163719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	206	0	0	NA	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon22:c.A3349C:p.S1117R	1qA2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	12848408	12A2p6	cell line	sgMsh2	12848408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	80	0	0	NA	exonic	Sulf1	synonymous SNV	"Sulf1:NM_001198566:exon19:c.C2502T:p.C834C,Sulf1:NM_001198565:exon20:c.C2502T:p.C834C,Sulf1:NM_172294:exon20:c.C2502T:p.C834C"	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.998527	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr1	12921116	12A2p6	cell line	sgMsh2	12921116	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	166	0	0	NA	exonic	Slco5a1	nonsynonymous SNV	Slco5a1:NM_172841:exon4:c.A1348G:p.T450A	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.873776217	1	0.9923513	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	15710517	12A2p6	cell line	sgMsh2	15710517	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	120	0	0	NA	exonic	Kcnb2	stopgain	Kcnb2:NM_001098528:exon3:c.C1612T:p.Q538X	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.99526382	1	0.9998123	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	15815963	12A2p6	cell line	sgMsh2	15815963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	129	0	0	NA	exonic	Terf1	synonymous SNV	Terf1:NM_009352:exon4:c.A576G:p.E192E	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999048	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	16369825	12A2p6	cell line	sgMsh2	16369825	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	142	0	0	NA	exonic	Stau2	frameshift deletion	"Stau2:NM_001111272:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_001347045:exon9:c.995delA:p.N332Mfs*66,Stau2:NM_025303:exon10:c.1091delA:p.N364Mfs*66,Stau2:NM_001347044:exon12:c.1091delA:p.N364Mfs*66"	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	"CAG, T"	"8, 8"	"CAGCAGCA, TTTTTTTT"	-1
M7_p20	chr1	19118939	12A2p6	cell line	sgMsh2	19118939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	30	0	0	NA	exonic	Tfap2d	synonymous SNV	"Tfap2d:NM_001379073:exon3:c.G720A:p.R240R,Tfap2d:NM_001379074:exon4:c.G636A:p.R212R,Tfap2d:NM_153154:exon4:c.G708A:p.R236R"	1qA3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9764031	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr1	20350413	12A2p6	cell line	sgMsh2	20350413	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	45	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon47:c.G7468A:p.G2490S	1qA4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9896629	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	21001577	12A2p6	cell line	sgMsh2	21001577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	130	0	0	NA	exonic	Tram2	synonymous SNV	Tram2:NM_177409:exon11:c.A1098G:p.K366K	1qA4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.99991	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	21079059	12A2p6	cell line	sgMsh2	21079059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	42	0	0	NA	exonic	Tram2	nonsynonymous SNV	Tram2:NM_177409:exon1:c.A55G:p.I19V	1qA4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9877977	ATG	nonsynonymous	GAT	8	GATGATGA	NA
M7_p20	chr1	24322942	12A2p6	cell line	sgMsh2	24322942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	54	0	0	NA	exonic	Col19a1	synonymous SNV	Col19a1:NM_007733:exon25:c.A1749G:p.K583K	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9937253	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	25547416	12A2p6	cell line	sgMsh2	25547416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	60	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon5:c.G1195A:p.V399I	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9955059	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	26682439	12A2p6	cell line	sgMsh2	26682439	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	250	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.G3659A:p.S1220N	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.962555619	1	0.999998	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	26683452	12A2p6	cell line	sgMsh2	26683452	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.189	160	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2646C:p.T882T	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.883121418	1	0.9946473	CTG	synonymous	CTGTA	10	CTGTACTGTA	NA
M7_p20	chr1	26683454	12A2p6	cell line	sgMsh2	26683454	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.189	160	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2644T:p.T882S	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.883121418	1	0.9946473	GTA	nonsynonymous	CTGTA	10	CTGTACTGTA	NA
M7_p20	chr1	26687339	12A2p6	cell line	sgMsh2	26687339	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	519	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G88A:p.A30T	1qA5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.196249204	3	1	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	32545462	12A2p6	cell line	sgMsh2	32545462	A	G	SNV	Mutect2;Vardict	2	0.021	696	0	0	NA	exonic	Gm5415	nonsynonymous SNV	Gm5415:NM_001164286:exon1:c.T1366C:p.F456L	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.098124602	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	32546523	12A2p6	cell line	sgMsh2	32546523	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	105	0	0	NA	exonic	Gm5415	nonsynonymous SNV	Gm5415:NM_001164286:exon1:c.G305A:p.R102K	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9996357	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	33776997	12A2p6	cell line	sgMsh2	33776997	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	109	0	0	NA	exonic	Zfp451	nonsynonymous SNV	"Zfp451:NM_001290699:exon8:c.T1388C:p.M463T,Zfp451:NM_001359274:exon10:c.T1871C:p.M624T,Zfp451:NM_001359275:exon10:c.T1871C:p.M624T,Zfp451:NM_133817:exon10:c.T1871C:p.M624T"	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9997087	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	33883519	12A2p6	cell line	sgMsh2	33883519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	79	0	0	NA	exonic	Bend6	synonymous SNV	Bend6:NM_177235:exon2:c.A42G:p.Q14Q	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9984424	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	36506420	12A2p6	cell line	sgMsh2	36506420	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	55	0	0	NA	exonic	Cnnm4	nonsynonymous SNV	Cnnm4:NM_033570:exon7:c.G2130C:p.Q710H	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9940646	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	37431486	12A2p6	cell line	sgMsh2	37431486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	121	0	0	NA	exonic	Unc50	nonsynonymous SNV	"Unc50:NM_001356528:exon2:c.T190C:p.Y64H,Unc50:NM_026123:exon2:c.T190C:p.Y64H"	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998511	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	40111977	12A2p6	cell line	sgMsh2	40111977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	108	0	0	NA	exonic	Il1r2	nonsynonymous SNV	"Il1r2:NM_001360801:exon3:c.A1G:p.M1V,Il1r2:NM_001360800:exon4:c.A445G:p.M149V,Il1r2:NM_010555:exon4:c.A391G:p.M131V"	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.976573419	1	0.9993279	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	40524327	12A2p6	cell line	sgMsh2	40524327	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Il18rap	synonymous SNV	Il18rap:NM_010553:exon4:c.C15G:p.G5G	1qB	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.934520019	1	0.9982252	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr1	43999752	12A2p6	cell line	sgMsh2	43999754	GAA	-	Deletion	Strelka2;Vardict	2	0.1875	160	0	0	NA	exonic	Tpp2	nonframeshift deletion	"Tpp2:NM_001310540:exon27:c.3457_3459del:p.E1155del,Tpp2:NM_009418:exon28:c.3496_3498del:p.E1168del"	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.876112517	NA	NA	GGA	inframe	GAA	10	GAAGAAGAAG	-3
M7_p20	chr1	45380206	12A2p6	cell line	sgMsh2	45380206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	74	0	0	NA	exonic	Col5a2	nonsynonymous SNV	Col5a2:NM_007737:exon51:c.A3713G:p.Y1238C	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9979409	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	45817269	12A2p6	cell line	sgMsh2	45817269	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	78	0	0	NA	exonic	Wdr75	frameshift deletion	Wdr75:NM_028599:exon14:c.1451delC:p.I485Lfs*34	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.841068017	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7_p20	chr1	46234215	12A2p6	cell line	sgMsh2	46234215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	163	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.T7370C:p.L2457P	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999858	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	46836054	12A2p6	cell line	sgMsh2	46836054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	194	0	0	NA	exonic	Slc39a10	synonymous SNV	"Slc39a10:NM_172653:exon2:c.T87C:p.H29H,Slc39a10:NM_001356416:exon3:c.T87C:p.H29H,Slc39a10:NM_001356417:exon3:c.T87C:p.H29H"	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.943865219	1	0.9999278	CAT	synonymous	CATGGT	13	CATGGTCATGGTC	NA
M7_p20	chr1	53299033	12A2p6	cell line	sgMsh2	53299033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	205	0	0	NA	exonic	Ormdl1	nonsynonymous SNV	Ormdl1:NM_145517:exon2:c.A55G:p.S19G	1qC1.1	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.864431017	1	0.9928771	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	54651725	12A2p6	cell line	sgMsh2	54651725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	238	0	0	NA	exonic	Ankrd44	nonsynonymous SNV	Ankrd44:NM_001081433:exon27:c.T2867C:p.V956A	1qC1.2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.850413217	1	0.9875539	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	55078678	12A2p6	cell line	sgMsh2	55078678	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	68	0	0	NA	exonic	Hspd1	nonsynonymous SNV	"Hspd1:NM_001356512:exon11:c.A1420T:p.I474F,Hspd1:NM_010477:exon11:c.A1420T:p.I474F"	1qC1.2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.915829618	1	0.983414	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	55079198	12A2p6	cell line	sgMsh2	55079198	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	190	0	0	NA	exonic	Hspd1	frameshift deletion	"Hspd1:NM_001356512:exon10:c.1248delG:p.D419Tfs*18,Hspd1:NM_010477:exon10:c.1248delG:p.D419Tfs*18"	1qC1.2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	TCT	frameshift	T	6	TTTTTT	-1
M7_p20	chr1	56636702	12A2p6	cell line	sgMsh2	56636702	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	114	0	0	NA	exonic	Hsfy2	nonsynonymous SNV	Hsfy2:NM_027661:exon1:c.C675A:p.D225E	1qC1.3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997797	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	56891178	12A2p6	cell line	sgMsh2	56891178	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	188	0	0	NA	exonic	Satb2	nonsynonymous SNV	"Satb2:NM_139146:exon6:c.T685C:p.Y229H,Satb2:NM_001358580:exon7:c.T685C:p.Y229H,Satb2:NM_001358581:exon7:c.T685C:p.Y229H"	1qC1.3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999965	TAC	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr1	58404268	12A2p6	cell line	sgMsh2	58404268	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.337	126	0	0	NA	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1142G:p.Y381C	1qC1.3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9998874	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	58404270	12A2p6	cell line	sgMsh2	58404270	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.337	126	0	0	NA	exonic	Bzw1	nonsynonymous SNV	Bzw1:NM_025824:exon11:c.A1144G:p.K382E	1qC1.3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.9998874	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	58997406	12A2p6	cell line	sgMsh2	58997406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	235	0	0	NA	exonic	C2cd6	nonsynonymous SNV	C2cd6:NM_026600:exon19:c.A6706T:p.M2236L	1qC1.3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	59867606	12A2p6	cell line	sgMsh2	59867606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	271	0	0	NA	exonic	Bmpr2	synonymous SNV	Bmpr2:NM_007561:exon12:c.C1857T:p.G619G	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	3.49E-08	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr1	60200873	12A2p6	cell line	sgMsh2	60200873	A	-	Deletion	Strelka2;Vardict	2	0.1839	87	0	0	NA	exonic	Nbeal1	frameshift deletion	Nbeal1:NM_173444:exon6:c.397delA:p.K135Rfs*14	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.859291157	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7_p20	chr1	62344084	12A2p6	cell line	sgMsh2	62344084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	40	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon17:c.A2336C:p.E779A	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.99993642	1	0.9863628	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	63748090	12A2p6	cell line	sgMsh2	63748090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	112	0	0	NA	exonic	Fastkd2	nonsynonymous SNV	Fastkd2:NM_172422:exon9:c.T1682C:p.L561P	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997537	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	65245796	12A2p6	cell line	sgMsh2	65245796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	219	0	0	NA	exonic	Pikfyve	synonymous SNV	"Pikfyve:NM_001310624:exon19:c.T2418C:p.T806T,Pikfyve:NM_011086:exon19:c.T2283C:p.T761T"	1qC2	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999994	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	66415713	12A2p6	cell line	sgMsh2	66415713	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	68	0	0	NA	exonic	Map2	nonsynonymous SNV	Map2:NM_001310634:exon7:c.T3761G:p.L1254R	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.817705016	1	0.8833332	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	68560567	12A2p6	cell line	sgMsh2	68560567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	234	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon3:c.T350C:p.L117S	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.967228219	1	0.9999971	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	71559269	12A2p6	cell line	sgMsh2	71559269	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	151	0	0	NA	exonic	Atic	nonsynonymous SNV	Atic:NM_026195:exon3:c.C190T:p.R64C	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999722	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	71613819	12A2p6	cell line	sgMsh2	71613819	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	130	0	0	NA	exonic	Fn1	nonsynonymous SNV	Fn1:NM_010233:exon25:c.T4010G:p.V1337G	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	2	1	1	0.99991	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	71645599	12A2p6	cell line	sgMsh2	71645599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	101	0	0	NA	exonic	Fn1	synonymous SNV	"Fn1:NM_001276408:exon6:c.T792C:p.N264N,Fn1:NM_001276409:exon6:c.T792C:p.N264N,Fn1:NM_001276410:exon6:c.T792C:p.N264N,Fn1:NM_001276411:exon6:c.T792C:p.N264N,Fn1:NM_001276412:exon6:c.T792C:p.N264N,Fn1:NM_001276413:exon6:c.T792C:p.N264N,Fn1:NM_010233:exon6:c.T792C:p.N264N"	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.901811818	1	0.9903827	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	74426621	12A2p6	cell line	sgMsh2	74426621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	81	0	0	NA	exonic	Vil1	nonsynonymous SNV	Vil1:NM_009509:exon14:c.A1570G:p.N524D	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.998607	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	74490187	12A2p6	cell line	sgMsh2	74490187	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.312	70	0	0	NA	exonic	Usp37	nonsynonymous SNV	"Usp37:NM_001310662:exon5:c.T332G:p.M111R,Usp37:NM_176972:exon6:c.T332G:p.M111R"	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.997426	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	74490189	12A2p6	cell line	sgMsh2	74490189	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.312	70	0	0	NA	exonic	Usp37	synonymous SNV	"Usp37:NM_001310662:exon5:c.T330C:p.A110A,Usp37:NM_176972:exon6:c.T330C:p.A110A"	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.997426	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr1	74575816	12A2p6	cell line	sgMsh2	74575816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	297	0	0	NA	exonic	Zfp142	nonsynonymous SNV	"Zfp142:NM_001310668:exon5:c.A1837G:p.K613E,Zfp142:NM_029888:exon5:c.A1528G:p.K510E"	1qC3	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.943865219	1	0.9999986	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	75429573	12A2p6	cell line	sgMsh2	75429573	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	36	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon36:c.A7118G:p.Q2373R,Speg:NM_007463:exon38:c.A9323G:p.Q3108R"	1qC4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9830153	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	75553708	12A2p6	cell line	sgMsh2	75553708	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	45	0	0	NA	exonic	Slc4a3	nonsynonymous SNV	"Slc4a3:NM_001357149:exon14:c.T2054C:p.V685A,Slc4a3:NM_001357150:exon14:c.T2054C:p.V685A,Slc4a3:NM_009208:exon14:c.T2054C:p.V685A"	1qC4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.621455812	2	0.00076506	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	78462901	12A2p6	cell line	sgMsh2	78462901	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	290	0	0	NA	exonic	Farsb	synonymous SNV	"Farsb:NM_001278075:exon12:c.A1104G:p.A368A,Farsb:NM_011811:exon12:c.A1104G:p.A368A"	1qC4	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	1.27E-08	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr1	82715280	12A2p6	cell line	sgMsh2	82715280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	46	0	0	NA	exonic	Col4a3	nonsynonymous SNV	Col4a3:NM_007734:exon48:c.A4285G:p.N1429D	1qC5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.99526382	1	0.9895469	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	84038321	12A2p6	cell line	sgMsh2	84038321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	152	0	0	NA	exonic	Pid1	nonsynonymous SNV	Pid1:NM_001003948:exon3:c.A364G:p.T122A	1qC5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999737	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	84751711	12A2p6	cell line	sgMsh2	84751711	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	45	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon22:c.A3184G:p.K1062E	1qC5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.565384611	2	0.8094128	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	84768596	12A2p6	cell line	sgMsh2	84768596	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	234	0	0	NA	exonic	Trip12	nonsynonymous SNV	Trip12:NM_133975:exon8:c.T1460C:p.V487A	1qC5	chr1-3216742-84929848	4	3	1	0.9	4.205340083	NA	1	0.289701206	3	2.44E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	85644590	12A2p6	cell line	sgMsh2	85644590	A	G	SNV	Mutect2;Vardict	2	0.065	149	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon17:c.A1513G:p.K505E	1qC5	chr1-85027661-85662926	6.70396452	4.70396452	2	0.9	4.205340083	NA	1	0.303719006	3	0.999985	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	85941647	12A2p6	cell line	sgMsh2	85941647	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	73	0	0	NA	exonic	Gpr55	nonsynonymous SNV	Gpr55:NM_001033290:exon2:c.C211G:p.L71V	1qC5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9978227	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	86350951	12A2p6	cell line	sgMsh2	86350951	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.16	41	0	0	NA	exonic	Ncl	synonymous SNV	Ncl:NM_010880:exon13:c.A1908G:p.K636K	1qC5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.747616015	1	0.7588082	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	86350960	12A2p6	cell line	sgMsh2	86350960	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.143	43	0	0	NA	exonic	Ncl	synonymous SNV	Ncl:NM_010880:exon13:c.C1899T:p.D633D	1qC5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.668181813	1	0.5121053	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr1	87949990	12A2p6	cell line	sgMsh2	87949990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	276	0	0	NA	exonic	Usp40	nonsynonymous SNV	"Usp40:NM_001033291:exon26:c.A3176G:p.Q1059R,Usp40:NM_001198573:exon30:c.A3443G:p.Q1148R"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	2.66E-08	TTG	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr1	88088110	12A2p6	cell line	sgMsh2	88088110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	188	0	0	NA	exonic	Ugt1a8	nonsynonymous SNV	Ugt1a8:NM_001378375:exon1:c.A244G:p.T82A	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999965	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	88212059	12A2p6	cell line	sgMsh2	88212059	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	568	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.T58C:p.C20R	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.177558804	3	1	GTG	nonsynonymous	TG	9	TGTGTGTGT	NA
M7_p20	chr1	88212249	12A2p6	cell line	sgMsh2	88212249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.037	1155	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.T248C:p.V83A	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.172886203	3	1	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	88247214	12A2p6	cell line	sgMsh2	88247214	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	990	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon25:c.A2715G:p.Q905Q	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.205594404	3	1	AAC	synonymous	C	5	CCCCC	NA
M7_p20	chr1	88255099	12A2p6	cell line	sgMsh2	88255099	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	243	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.A3667G:p.T1223A	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.308391606	3	1.22E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	88255223	12A2p6	cell line	sgMsh2	88255223	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	161	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3791G:p.V1264G	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.406516208	3	0.8285157	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	88256404	12A2p6	cell line	sgMsh2	88256404	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	310	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon36:c.T4109C:p.M1370T	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.266338205	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	88266615	12A2p6	cell line	sgMsh2	88266615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	378	0	0	NA	exonic	A730008H23Rik;Hjurp	synonymous SNV	"A730008H23Rik:NM_172505:exon5:c.A342G:p.E114E,Hjurp:NM_198652:exon8:c.A570G:p.E190E"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.308391606	3	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	89145723	12A2p6	cell line	sgMsh2	89145723	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	34	0	0	NA	exonic	Sh3bp4	synonymous SNV	Sh3bp4:NM_133816:exon4:c.C2292T:p.N764N	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9810433	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr1	89152266	12A2p6	cell line	sgMsh2	89152266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	97	0	0	NA	exonic	Sh3bp4	nonsynonymous SNV	Sh3bp4:NM_133816:exon5:c.A2542G:p.T848A	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9994302	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	90807774	12A2p6	cell line	sgMsh2	90807774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	80	0	0	NA	exonic	Col6a3	synonymous SNV	"Col6a3:NM_001243009:exon6:c.C2152T:p.L718L,Col6a3:NM_001243008:exon9:c.C3973T:p.L1325L"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.998527	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr1	90822219	12A2p6	cell line	sgMsh2	90822219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	67	0	0	NA	exonic	Col6a3	nonsynonymous SNV	Col6a3:NM_001243008:exon4:c.T892C:p.Y298H	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9969573	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	91431044	12A2p6	cell line	sgMsh2	91431044	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	97	0	0	NA	exonic	Per2	nonsynonymous SNV	Per2:NM_011066:exon15:c.A1718C:p.E573A	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9994302	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	92982926	12A2p6	cell line	sgMsh2	92982926	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	91	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T359A:p.L120Q,Gpr35:NM_001271766:exon2:c.T359A:p.L120Q,Gpr35:NM_022320:exon2:c.T359A:p.L120Q"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.887794018	1	0.9817412	CTG	nonsynonymous	TGCG	8	TGCGTGCG	NA
M7_p20	chr1	93500465	12A2p6	cell line	sgMsh2	93500465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	232	0	0	NA	exonic	Septin2	nonsynonymous SNV	"Septin2:NM_001159718:exon7:c.A482G:p.D161G,Septin2:NM_001159717:exon8:c.A602G:p.D201G,Septin2:NM_001159719:exon8:c.A602G:p.D201G,Septin2:NM_010891:exon8:c.A602G:p.D201G"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.920502218	1	0.9999113	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	93874525	12A2p6	cell line	sgMsh2	93874525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	59	0	0	NA	exonic	Gal3st2	synonymous SNV	Gal3st2:NM_199366:exon4:c.T627C:p.V209V	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9952486	TTC	synonymous	NA	NA	NA	NA
M7_p20	chr1	93874743	12A2p6	cell line	sgMsh2	93874743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	103	0	0	NA	exonic	Gal3st2	nonsynonymous SNV	Gal3st2:NM_199366:exon4:c.A845G:p.Y282C	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.943865219	1	0.9975806	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	94024961	12A2p6	cell line	sgMsh2	94024961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	94	0	0	NA	exonic	Neu4	synonymous SNV	"Neu4:NM_173772:exon4:c.T982C:p.L328L,Neu4:NM_001310769:exon5:c.T1051C:p.L351L"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.677527013	2	0.8857261	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	98466696	12A2p6	cell line	sgMsh2	98466696	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	201	0	0	NA	exonic	Slco6d1	synonymous SNV	"Slco6d1:NM_001164233:exon7:c.A1104G:p.V368V,Slco6d1:NM_027584:exon7:c.A1104G:p.V368V"	1qD	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999983	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	106027531	12A2p6	cell line	sgMsh2	106027531	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	76	0	0	NA	exonic	Zcchc2	nonsynonymous SNV	"Zcchc2:NM_001122675:exon12:c.G1951T:p.D651Y,Zcchc2:NM_001122676:exon12:c.G1951T:p.D651Y"	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9981584	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	107047605	12A2p6	cell line	sgMsh2	107047605	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	336	0	0	NA	exonic	Serpinb3a	nonsynonymous SNV	Serpinb3a:NM_009126:exon6:c.G471T:p.K157N	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.439224409	2	0.893886	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	107515526	12A2p6	cell line	sgMsh2	107515526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	147	0	0	NA	exonic	Serpinb2	synonymous SNV	"Serpinb2:NM_001174170:exon2:c.G54A:p.Q18Q,Serpinb2:NM_011111:exon2:c.G54A:p.Q18Q"	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.682199614	2	0.9843825	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr1	110925087	12A2p6	cell line	sgMsh2	110925087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	182	0	0	NA	exonic	Cdh19	nonsynonymous SNV	"Cdh19:NM_001081386:exon7:c.T1117A:p.Y373N,Cdh19:NM_001356415:exon8:c.T1117A:p.Y373N"	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999951	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	111859493	12A2p6	cell line	sgMsh2	111859493	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	181	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.C3311A:p.A1104E	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999948	TGC	nonsynonymous	GCT	8	GCTGCTGC	NA
M7_p20	chr1	111859515	12A2p6	cell line	sgMsh2	111859515	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	172	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.T3289G:p.L1097V	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.168213603	3	1.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	111862676	12A2p6	cell line	sgMsh2	111862676	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	165	0	0	NA	exonic	Dsel	nonsynonymous SNV	Dsel:NM_001081316:exon2:c.A128G:p.K43R	1qE2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999873	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	116060165	12A2p6	cell line	sgMsh2	116060165	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	256	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon4:c.A425G:p.K142R,Cntnap5a:NM_001371013:exon4:c.A425G:p.K142R"	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	nonsynonymous	GCT	8	GCTGCTGC	NA
M7_p20	chr1	116089370	12A2p6	cell line	sgMsh2	116089370	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	210	0	0	NA	exonic	Cntnap5a	nonsynonymous SNV	"Cntnap5a:NM_001077425:exon5:c.T692C:p.L231P,Cntnap5a:NM_001371013:exon5:c.T692C:p.L231P"	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.999999	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	118543148	12A2p6	cell line	sgMsh2	118543148	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	203	0	0	NA	exonic	Clasp1	nonsynonymous SNV	"Clasp1:NM_001293301:exon23:c.A2330G:p.D777G,Clasp1:NM_001359340:exon24:c.A2357G:p.D786G,Clasp1:NM_029709:exon24:c.A2354G:p.D785G,Clasp1:NM_001359338:exon25:c.A2381G:p.D794G,Clasp1:NM_001359341:exon25:c.A2465G:p.D822G,Clasp1:NM_001359342:exon25:c.A2462G:p.D821G,Clasp1:NM_001359346:exon25:c.A2381G:p.D794G,Clasp1:NM_001359330:exon26:c.A2489G:p.D830G,Clasp1:NM_001359336:exon26:c.A2405G:p.D802G,Clasp1:NM_001359339:exon26:c.A2489G:p.D830G,Clasp1:NM_001359343:exon26:c.A2444G:p.D815G,Clasp1:NM_001359345:exon26:c.A2405G:p.D802G,Clasp1:NM_001293300:exon27:c.A2513G:p.D838G,Clasp1:NM_001359329:exon27:c.A2552G:p.D851G,Clasp1:NM_001359334:exon27:c.A2552G:p.D851G,Clasp1:NM_001359335:exon27:c.A2552G:p.D851G,Clasp1:NM_001359337:exon27:c.A2513G:p.D838G,Clasp1:NM_001359347:exon27:c.A1283G:p.D428G,Clasp1:NM_001359328:exon28:c.A2576G:p.D859G,Clasp1:NM_001359331:exon28:c.A2576G:p.D859G"	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.911157018	1	0.9996044	GAT	nonsynonymous	TGA	11	TGATGATGATG	NA
M7_p20	chr1	119527237	12A2p6	cell line	sgMsh2	119527237	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	212	0	0	NA	exonic	Tmem185b	nonsynonymous SNV	Tmem185b:NM_146103:exon1:c.T727C:p.Y243H	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999991	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	123445299	12A2p6	cell line	sgMsh2	123445299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	125	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon8:c.T611C:p.I204T	1qE2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9998809	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	127551395	12A2p6	cell line	sgMsh2	127551395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	229	0	0	NA	exonic	Tmem163	nonsynonymous SNV	Tmem163:NM_028135:exon4:c.T386C:p.L129P	1qE3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	129760458	12A2p6	cell line	sgMsh2	129760458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	107	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon9:c.A2105G:p.K702R	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9996742	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	130190141	12A2p6	cell line	sgMsh2	130190141	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	348	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon24:c.T4293G:p.C1431W	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.46E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	131256936	12A2p6	cell line	sgMsh2	131256936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	209	0	0	NA	exonic	Ikbke	nonsynonymous SNV	Ikbke:NM_019777:exon21:c.A2071G:p.M691V	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999989	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	131275169	12A2p6	cell line	sgMsh2	131275169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	88	0	0	NA	exonic	Ikbke	synonymous SNV	Ikbke:NM_019777:exon5:c.A339G:p.L113L	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.621455812	2	0.964713	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr1	131931064	12A2p6	cell line	sgMsh2	131931064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	41	0	0	NA	exonic	Nucks1	nonsynonymous SNV	"Nucks1:NM_001145804:exon7:c.A560G:p.K187R,Nucks1:NM_175294:exon7:c.A563G:p.K188R"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.897139218	1	0.9542235	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	132023625	12A2p6	cell line	sgMsh2	132023625	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	129	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376959:exon4:c.T397A:p.F133I,Elk4:NM_001376954:exon5:c.T1267A:p.F423I,Elk4:NM_001376955:exon5:c.T1267A:p.F423I,Elk4:NM_001376956:exon5:c.T1267A:p.F423I,Elk4:NM_007923:exon5:c.T1267A:p.F423I,Elk4:NM_001376957:exon6:c.T1267A:p.F423I,Elk4:NM_001376958:exon6:c.T1267A:p.F423I"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.957883019	1	0.9994914	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	132304732	12A2p6	cell line	sgMsh2	132304732	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	103	0	0	NA	exonic	Klhdc8a	frameshift deletion	Klhdc8a:NM_144810:exon5:c.993delG:p.G333Vfs*5	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7_p20	chr1	132991797	12A2p6	cell line	sgMsh2	132991797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	97	0	0	NA	exonic	Mdm4	synonymous SNV	"Mdm4:NM_001302801:exon11:c.T1332C:p.P444P,Mdm4:NM_001302802:exon11:c.T1332C:p.P444P,Mdm4:NM_001302803:exon11:c.T1329C:p.P443P,Mdm4:NM_001302804:exon11:c.T948C:p.P316P,Mdm4:NM_008575:exon12:c.T1329C:p.P443P"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.901811818	1	0.9893551	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr1	133639049	12A2p6	cell line	sgMsh2	133639049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	194	0	0	NA	exonic	Zc3h11a	nonsynonymous SNV	"Zc3h11a:NM_001357228:exon6:c.G493A:p.D165N,Zc3h11a:NM_144530:exon6:c.G493A:p.D165N,Zc3h11a:NM_001276767:exon7:c.G493A:p.D165N"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999975	TCT	nonsynonymous	TCA	17	TCATCTTCATCATCATC	NA
M7_p20	chr1	133657321	12A2p6	cell line	sgMsh2	133657321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	131	0	0	NA	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.T2277C:p.S759S	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999149	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr1	133658840	12A2p6	cell line	sgMsh2	133658840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	133	0	0	NA	exonic	Zbed6	nonsynonymous SNV	Zbed6:NM_001166552:exon1:c.A758C:p.N253T	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999239	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	133739185	12A2p6	cell line	sgMsh2	133739185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	93	0	0	NA	exonic	Atp2b4	synonymous SNV	"Atp2b4:NM_001167949:exon3:c.A627G:p.G209G,Atp2b4:NM_213616:exon3:c.A627G:p.G209G"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.654164013	2	0.9355013	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr1	133903690	12A2p6	cell line	sgMsh2	133903690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	198	0	0	NA	exonic	Optc	synonymous SNV	"Optc:NM_001160421:exon3:c.A477G:p.V159V,Optc:NM_001160422:exon3:c.A477G:p.V159V,Optc:NM_054076:exon3:c.A477G:p.V159V,Optc:NM_001160420:exon4:c.A477G:p.V159V"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.999998	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr1	134203040	12A2p6	cell line	sgMsh2	134203040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	145	0	0	NA	exonic	Adora1	nonsynonymous SNV	"Adora1:NM_001008533:exon2:c.A892G:p.T298A,Adora1:NM_001291928:exon2:c.A622G:p.T208A,Adora1:NM_001291930:exon2:c.A466G:p.T156A,Adora1:NM_001039510:exon3:c.A892G:p.T298A,Adora1:NM_001282945:exon3:c.A892G:p.T298A"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.864431017	1	0.9835489	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	134300497	12A2p6	cell line	sgMsh2	134300497	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	115	0	0	NA	exonic	Ppfia4	synonymous SNV	"Ppfia4:NM_001144855:exon26:c.C3300A:p.A1100A,Ppfia4:NM_001374777:exon27:c.C3300A:p.A1100A"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997917	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr1	134355657	12A2p6	cell line	sgMsh2	134355657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	101	0	0	NA	exonic	Tmem183a	nonsynonymous SNV	"Tmem183a:NM_001042485:exon4:c.T424C:p.Y142H,Tmem183a:NM_020588:exon4:c.T427C:p.Y143H"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.813032416	1	0.8663179	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	134487065	12A2p6	cell line	sgMsh2	134487065	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	235	0	0	NA	exonic	Klhl12	nonsynonymous SNV	"Klhl12:NM_001311136:exon9:c.G1191T:p.E397D,Klhl12:NM_153128:exon9:c.G1191T:p.E397D"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	135167045	12A2p6	cell line	sgMsh2	135167045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	161	0	0	NA	exonic	Gpr37l1	nonsynonymous SNV	Gpr37l1:NM_134438:exon1:c.A460G:p.I154V	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999841	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	135167376	12A2p6	cell line	sgMsh2	135167376	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.192	41	0	0	NA	exonic	Gpr37l1	synonymous SNV	Gpr37l1:NM_134438:exon1:c.A129C:p.R43R	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.897139218	1	0.9542235	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr1	135272375	12A2p6	cell line	sgMsh2	135272375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	71	0	0	NA	exonic	Rnpep	nonsynonymous SNV	Rnpep:NM_145417:exon4:c.T841C:p.Y281H	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9975657	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	135405832	12A2p6	cell line	sgMsh2	135405832	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	114	0	0	NA	exonic	Ipo9	nonsynonymous SNV	"Ipo9:NM_153774:exon10:c.A1111G:p.T371A,Ipo9:NM_001357575:exon11:c.A1003G:p.T335A,Ipo9:NM_001357576:exon11:c.A658G:p.T220A,Ipo9:NM_001357578:exon11:c.A265G:p.T89A,Ipo9:NM_001357577:exon12:c.A658G:p.T220A"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997797	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	136118373	12A2p6	cell line	sgMsh2	136118373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	97	0	0	NA	exonic	Cacna1s	nonsynonymous SNV	"Cacna1s:NM_014193:exon41:c.A5115T:p.R1705S,Cacna1s:NM_001081023:exon42:c.A5172T:p.R1724S"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.967228219	1	0.9984825	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	136153261	12A2p6	cell line	sgMsh2	136153261	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	50	0	0	NA	exonic	Kif21b	synonymous SNV	Kif21b:NM_001039472:exon13:c.G1839T:p.S613S	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.878448817	1	9.69E-09	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr1	136165026	12A2p6	cell line	sgMsh2	136165026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	141	0	0	NA	exonic	Kif21b	nonsynonymous SNV	Kif21b:NM_001039472:exon27:c.A3704C:p.D1235A	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999513	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	136625870	12A2p6	cell line	sgMsh2	136625870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	114	0	0	NA	exonic	Zfp281	synonymous SNV	"Zfp281:NM_001160251:exon2:c.A585G:p.L195L,Zfp281:NM_177643:exon2:c.A585G:p.L195L"	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997797	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr1	139236840	12A2p6	cell line	sgMsh2	139236840	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	100	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon9:c.T3728C:p.F1243S	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9995182	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	139479369	12A2p6	cell line	sgMsh2	139479369	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	38	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.C5993A:p.A1998D	1qE4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9847852	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	139492825	12A2p6	cell line	sgMsh2	139492825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	132	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon27:c.T9215C:p.V3072A	1qF	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999195	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	139698220	12A2p6	cell line	sgMsh2	139698220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	206	0	0	NA	exonic	Gm4788	nonsynonymous SNV	"Gm4788:NM_001160304:exon14:c.A2338G:p.I780V,Gm4788:NM_001029977:exon15:c.A2515G:p.I839V,Gm4788:NM_001160303:exon15:c.A2512G:p.I838V"	1qF	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999987	ATA	nonsynonymous	AATA	8	AATAAATA	NA
M7_p20	chr1	140246265	12A2p6	cell line	sgMsh2	140246265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	74	0	0	NA	exonic	Kcnt2	synonymous SNV	Kcnt2:NM_001081027:exon1:c.T9C:p.D3D	1qF	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9979409	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr1	150573530	12A2p6	cell line	sgMsh2	150573530	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.214	225	0	0	NA	exonic	Hmcn1	stopgain	Hmcn1:NM_001024720:exon105:c.C16357T:p.Q5453X	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99993642	1	0.9999996	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	150573532	12A2p6	cell line	sgMsh2	150573532	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.214	225	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon105:c.A16355T:p.Y5452F	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99993642	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	150652555	12A2p6	cell line	sgMsh2	150652555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	264	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon64:c.A9841G:p.R3281G	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	5.11E-08	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	150686813	12A2p6	cell line	sgMsh2	150686813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	169	0	0	NA	exonic	Hmcn1	frameshift deletion	Hmcn1:NM_001024720:exon45:c.6993delC:p.L2332fs*0	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7_p20	chr1	151411279	12A2p6	cell line	sgMsh2	151411279	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	79	0	0	NA	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon6:c.T461G:p.I154S	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9984424	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	151420172	12A2p6	cell line	sgMsh2	151420172	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	80	0	0	NA	exonic	Swt1	synonymous SNV	Swt1:NM_025819:exon4:c.G153A:p.K51K	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.998527	CCT	synonymous	T	5	TTTTT	NA
M7_p20	chr1	151453933	12A2p6	cell line	sgMsh2	151453933	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	216	0	0	NA	exonic	Trmt1l	nonsynonymous SNV	"Trmt1l:NM_001357569:exon12:c.A1626T:p.E542D,Trmt1l:NM_001357570:exon12:c.A822T:p.E274D,Trmt1l:NM_026876:exon12:c.A1626T:p.E542D"	1qG1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	153154408	12A2p6	cell line	sgMsh2	153154408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	114	0	0	NA	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon5:c.G487A:p.G163R	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997797	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	153262514	12A2p6	cell line	sgMsh2	153262514	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.108	52	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon2:c.A593G:p.E198G	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.50464081	2	0.9308732	CTC	nonsynonymous	CTG	8	CTGCTGCT	NA
M7_p20	chr1	154398634	12A2p6	cell line	sgMsh2	154398634	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	41	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon47:c.C6581T:p.A2194V	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9871049	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	155129292	12A2p6	cell line	sgMsh2	155129292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	169	0	0	NA	exonic	Mr1	nonsynonymous SNV	"Mr1:NM_001355062:exon6:c.T788C:p.V263A,Mr1:NM_001355063:exon6:c.T665C:p.V222A,Mr1:NM_008209:exon6:c.T1001C:p.V334A"	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999898	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	155146647	12A2p6	cell line	sgMsh2	155146647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	166	0	0	NA	exonic	Mr1	nonsynonymous SNV	Mr1:NM_008209:exon1:c.A40C:p.K14Q	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.999988	TTC	nonsynonymous	GCTTC	10	GCTTCGCTTC	NA
M7_p20	chr1	155217499	12A2p6	cell line	sgMsh2	155217499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	41	0	0	NA	exonic	BC034090	nonsynonymous SNV	BC034090:NM_001370865:exon9:c.A3298G:p.T1100A	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9871049	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	155933429	12A2p6	cell line	sgMsh2	155933429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	81	0	0	NA	exonic	Cep350	nonsynonymous SNV	Cep350:NM_001039184:exon10:c.A1400G:p.E467G	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.998607	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	156635173	12A2p6	cell line	sgMsh2	156635173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	185	0	0	NA	exonic	Abl2	nonsynonymous SNV	"Abl2:NM_001136104:exon9:c.A1517G:p.Q506R,Abl2:NM_009595:exon9:c.A1517G:p.Q506R"	1qG3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999958	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	158247106	12A2p6	cell line	sgMsh2	158247106	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	83	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon8:c.C1444A:p.P482T	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.934520019	1	0.9933759	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	158251397	12A2p6	cell line	sgMsh2	158251397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	84	0	0	NA	exonic	Brinp2	synonymous SNV	Brinp2:NM_207583:exon6:c.G855A:p.E285E	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.971900819	1	0.9975632	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr1	158667577	12A2p6	cell line	sgMsh2	158667577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	71	0	0	NA	exonic	Astn1	nonsynonymous SNV	"Astn1:NM_001205204:exon19:c.A3194G:p.Y1065C,Astn1:NM_007495:exon19:c.A3170G:p.Y1057C"	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9975657	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	158848221	12A2p6	cell line	sgMsh2	158848221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	124	0	0	NA	exonic	Pappa2	nonsynonymous SNV	Pappa2:NM_001085376:exon8:c.T2954C:p.I985T	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998741	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	158936779	12A2p6	cell line	sgMsh2	158936779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	141	0	0	NA	exonic	Pappa2	synonymous SNV	Pappa2:NM_001085376:exon3:c.T1161C:p.A387A	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99526382	1	0.9999402	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr1	159278090	12A2p6	cell line	sgMsh2	159278090	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	285	0	0	NA	exonic	Cop1	nonsynonymous SNV	"Cop1:NM_001360878:exon9:c.A964T:p.S322C,Cop1:NM_011931:exon9:c.A976T:p.S326C"	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.65E-08	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	159851961	12A2p6	cell line	sgMsh2	159851961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	113	0	0	NA	exonic	Tnr	synonymous SNV	Tnr:NM_022312:exon4:c.A504G:p.Q168Q	1qH1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99993642	1	0.9997665	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr1	161157126	12A2p6	cell line	sgMsh2	161157126	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	358	0	0	NA	exonic	Tex50	synonymous SNV	Tex50:NM_001195189:exon2:c.T543C:p.T181T	1qH2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.26E-09	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr1	162545775	12A2p6	cell line	sgMsh2	162545775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	108	0	0	NA	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T906C:p.I302I	1qH2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9996919	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr1	162546462	12A2p6	cell line	sgMsh2	162546462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	165	0	0	NA	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.T219C:p.D73D	1qH2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.943865219	1	0.9997787	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	162955215	12A2p6	cell line	sgMsh2	162955215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	410	0	0	NA	exonic	Fmo3	nonsynonymous SNV	Fmo3:NM_008030:exon8:c.A1232C:p.E411A	1qH2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.01E-09	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	163952152	12A2p6	cell line	sgMsh2	163952152	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	44	0	0	NA	exonic	Scyl3	nonsynonymous SNV	"Scyl3:NM_001286002:exon13:c.A1648C:p.T550P,Scyl3:NM_001286003:exon13:c.A1003C:p.T335P,Scyl3:NM_001357426:exon13:c.A1003C:p.T335P,Scyl3:NM_028776:exon13:c.A1687C:p.T563P"	1qH2.1	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9890748	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	164217413	12A2p6	cell line	sgMsh2	164217413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	224	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon24:c.A6269G:p.K2090R	1qH2.2	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999995	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	165336829	12A2p6	cell line	sgMsh2	165336829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	77	0	0	NA	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon17:c.A2376G:p.L792L	1qH2.2	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9982584	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr1	165351045	12A2p6	cell line	sgMsh2	165351045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	141	0	0	NA	exonic	Dcaf6	synonymous SNV	Dcaf6:NM_028759:exon14:c.T1914C:p.H638H	1qH2.2	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.836395417	1	0.943484	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	165576619	12A2p6	cell line	sgMsh2	165576619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	95	0	0	NA	exonic	Adcy10	synonymous SNV	"Adcy10:NM_001357427:exon34:c.A3354G:p.A1118A,Adcy10:NM_173029:exon34:c.A4842G:p.A1614A"	1qH2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9993628	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	165875869	12A2p6	cell line	sgMsh2	165875869	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	57	0	0	NA	exonic	Pou2f1	nonsynonymous SNV	"Pou2f1:NM_198932:exon16:c.G2179T:p.G727W,Pou2f1:NM_198933:exon16:c.G2146T:p.G716W,Pou2f1:NM_001368808:exon17:c.G2182T:p.G728W,Pou2f1:NM_011137:exon17:c.G2251T:p.G751W,Pou2f1:NM_198934:exon17:c.G2218T:p.G740W"	1qH2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9946893	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	167635711	12A2p6	cell line	sgMsh2	167635711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	103	0	0	NA	exonic	Rxrg	synonymous SNV	"Rxrg:NM_001159731:exon8:c.T781C:p.L261L,Rxrg:NM_009107:exon9:c.T1150C:p.L384L"	1qH2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9995926	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	167846641	12A2p6	cell line	sgMsh2	167846641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	171	0	0	NA	exonic	Lmx1a	synonymous SNV	Lmx1a:NM_033652:exon8:c.A1029G:p.T343T	1qH2.3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999909	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	170311760	12A2p6	cell line	sgMsh2	170311760	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	80	0	0	NA	exonic	Spata46	frameshift deletion	Spata46:NM_001039593:exon2:c.327delC:p.R111Gfs*19	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.906484418	NA	NA	ACC	frameshift	NA	NA	NA	-1
M7_p20	chr1	170867653	12A2p6	cell line	sgMsh2	170867653	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	16	0	0	NA	exonic	Atf6	nonsynonymous SNV	Atf6:NM_001081304:exon1:c.T49A:p.W17R	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9497451	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	170907874	12A2p6	cell line	sgMsh2	170907874	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.375	9	0	0	NA	exonic	Fcrlb	nonsynonymous SNV	Fcrlb:NM_001029984:exon5:c.C830A:p.P277Q	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9268446	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	170912927	12A2p6	cell line	sgMsh2	170912927	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.239	117	0	0	NA	exonic	Fcrlb	synonymous SNV	Fcrlb:NM_001029984:exon1:c.A15T:p.A5A	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998137	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr1	171054004	12A2p6	cell line	sgMsh2	171054004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	434	0	0	NA	exonic	Fcgr3	nonsynonymous SNV	"Fcgr3:NM_001356511:exon4:c.A551G:p.Y184C,Fcgr3:NM_010188:exon4:c.A554G:p.Y185C"	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.00E-09	GTA	nonsynonymous	AGT	9	AGTAGTAGT	NA
M7_p20	chr1	171158906	12A2p6	cell line	sgMsh2	171158906	A	-	Deletion	Strelka2;Vardict	2	0.3069	189	0	0	NA	exonic	Mpz	frameshift deletion	"Mpz:NM_001315499:exon3:c.388delA:p.N131Tfs*4,Mpz:NM_008623:exon5:c.388delA:p.N131Tfs*4"	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr1	171236387	12A2p6	cell line	sgMsh2	171236387	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	84	0	0	NA	exonic	Ndufs2	stopgain	Ndufs2:NM_153064:exon11:c.T1266A:p.C422X	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9988219	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	192	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999972	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	172119922	12A2p6	cell line	sgMsh2	172119922	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	126	0	0	NA	exonic	Copa	nonsynonymous SNV	Copa:NM_009938:exon31:c.A3304C:p.I1102L	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998874	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	172244047	12A2p6	cell line	sgMsh2	172244047	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	88	0	0	NA	exonic	Atp1a4	nonsynonymous SNV	Atp1a4:NM_013734:exon11:c.A1480T:p.N494Y	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9990578	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	172290712	12A2p6	cell line	sgMsh2	172290712	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	138	0	0	NA	exonic	Atp1a2	nonsynonymous SNV	Atp1a2:NM_178405:exon5:c.A394T:p.I132F	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999424	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	172560771	12A2p6	cell line	sgMsh2	172560771	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	90	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon4:c.T641C:p.I214T	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9991574	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	172584444	12A2p6	cell line	sgMsh2	172584444	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.202	176	0	0	NA	exonic	Slamf8	nonsynonymous SNV	Slamf8:NM_029084:exon3:c.T563C:p.L188P	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.943865219	1	0.9998552	CAG	nonsynonymous	CCCAGT	12	CCCAGTCCCAGT	NA
M7_p20	chr1	174028199	12A2p6	cell line	sgMsh2	174028199	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	207	0	0	NA	exonic	Ifi205	synonymous SNV	Ifi205:NM_172648:exon2:c.A264G:p.E88E	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.98591862	1	0.999997	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr1	174069592	12A2p6	cell line	sgMsh2	174069592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	165	0	0	NA	exonic	Olfr430	nonsynonymous SNV	Olfr430:NM_146718:exon1:c.T293C:p.L98P	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.967228219	1	0.9999326	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	174250568	12A2p6	cell line	sgMsh2	174250568	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	exonic	Olfr419	nonsynonymous SNV	Olfr419:NM_146715:exon1:c.T358C:p.F120L	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997917	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	174836908	12A2p6	cell line	sgMsh2	174836908	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	65	0	0	NA	exonic	Grem2	nonsynonymous SNV	Grem2:NM_011825:exon2:c.C374T:p.P125L	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.99059122	1	0.9958951	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	175705958	12A2p6	cell line	sgMsh2	175705958	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	150	0	0	NA	exonic	Wdr64	synonymous SNV	Wdr64:NM_029453:exon2:c.T159C:p.Y53Y	1qH3	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999706	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr1	176274706	12A2p6	cell line	sgMsh2	176274706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	31	0	0	NA	exonic	Pld5	nonsynonymous SNV	Pld5:NM_176916:exon1:c.A169G:p.R57G	1qH4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9776579	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	180067347	12A2p6	cell line	sgMsh2	180067347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	353	0	0	NA	exonic	Cdc42bpa	nonsynonymous SNV	"Cdc42bpa:NM_001033285:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346804:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001346805:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359541:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359542:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359543:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359544:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359545:exon8:c.G1091A:p.S364N,Cdc42bpa:NM_001359546:exon9:c.G884A:p.S295N,Cdc42bpa:NM_001359547:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359548:exon9:c.G779A:p.S260N,Cdc42bpa:NM_001359549:exon9:c.G779A:p.S260N"	1qH4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	1.35E-09	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	180144741	12A2p6	cell line	sgMsh2	180144741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	216	0	0	NA	exonic	Cdc42bpa	synonymous SNV	"Cdc42bpa:NM_001346805:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001359544:exon28:c.T3825C:p.S1275S,Cdc42bpa:NM_001346804:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359541:exon29:c.T4068C:p.S1356S,Cdc42bpa:NM_001359545:exon29:c.T4008C:p.S1336S,Cdc42bpa:NM_001033285:exon30:c.T4107C:p.S1369S,Cdc42bpa:NM_001359543:exon30:c.T4116C:p.S1372S,Cdc42bpa:NM_001359549:exon30:c.T3696C:p.S1232S,Cdc42bpa:NM_001359542:exon31:c.T4155C:p.S1385S,Cdc42bpa:NM_001359546:exon31:c.T3900C:p.S1300S,Cdc42bpa:NM_001359548:exon31:c.T3804C:p.S1268S,Cdc42bpa:NM_001359547:exon32:c.T3843C:p.S1281S"	1qH4	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999993	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr1	181816916	12A2p6	cell line	sgMsh2	181816916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	114	0	0	NA	exonic	Lbr	nonsynonymous SNV	Lbr:NM_133815:exon14:c.T1823C:p.L608P	1qH5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.934520019	1	0.9978018	CAG	nonsynonymous	CCAGG	12	CCAGGCCAGGCC	NA
M7_p20	chr1	181817266	12A2p6	cell line	sgMsh2	181817266	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	146	0	0	NA	exonic	Lbr	synonymous SNV	Lbr:NM_133815:exon13:c.T1719C:p.C573C	1qH5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999632	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr1	182279256	12A2p6	cell line	sgMsh2	182279256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	182	0	0	NA	exonic	Degs1	nonsynonymous SNV	"Degs1:NM_001360783:exon2:c.T437C:p.I146T,Degs1:NM_007853:exon2:c.T545C:p.I182T"	1qH5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999951	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	182973202	12A2p6	cell line	sgMsh2	182973202	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	164	0	0	NA	exonic	Tlr5	nonsynonymous SNV	Tlr5:NM_016928:exon4:c.G70T:p.G24C	1qH5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999866	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	185345386	12A2p6	cell line	sgMsh2	185345386	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	191	0	0	NA	exonic	Bpnt1	synonymous SNV	"Bpnt1:NM_001347212:exon3:c.G132A:p.P44P,Bpnt1:NM_001347210:exon4:c.G297A:p.P99P,Bpnt1:NM_011794:exon4:c.G297A:p.P99P"	1qH5	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.48127781	2	0.9990476	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr1	188318965	12A2p6	cell line	sgMsh2	188318965	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	211	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon3:c.A647G:p.H216R	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.392498408	3	0.9878745	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	188849011	12A2p6	cell line	sgMsh2	188849011	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	139	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon56:c.C11087A:p.P3696H	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.822377616	1	0.09946918	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	189652379	12A2p6	cell line	sgMsh2	189652379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	246	0	0	NA	exonic	Cenpf	nonsynonymous SNV	Cenpf:NM_001081363:exon13:c.T7703C:p.V2568A	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	190871597	12A2p6	cell line	sgMsh2	190871597	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	195	0	0	NA	exonic	Rps6kc1	nonsynonymous SNV	Rps6kc1:NM_178775:exon6:c.T827C:p.V276A	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.957883019	1	0.9999701	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	191013388	12A2p6	cell line	sgMsh2	191013388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	154	0	0	NA	exonic	Flvcr1	synonymous SNV	"Flvcr1:NM_001313747:exon3:c.T645C:p.N215N,Flvcr1:NM_001081259:exon4:c.T1083C:p.N361N"	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999765	GAT	synonymous	NA	NA	NA	NA
M7_p20	chr1	191058906	12A2p6	cell line	sgMsh2	191058906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	131	0	0	NA	exonic	Tatdn3	nonsynonymous SNV	"Tatdn3:NM_001163421:exon4:c.A170G:p.N57S,Tatdn3:NM_001163422:exon4:c.A170G:p.N57S,Tatdn3:NM_001357166:exon4:c.A170G:p.N57S,Tatdn3:NM_026895:exon4:c.A170G:p.N57S"	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999149	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	191163797	12A2p6	cell line	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.5172	58	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M7_p20	chr1	191619690	12A2p6	cell line	sgMsh2	191619690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	exonic	Ints7	nonsynonymous SNV	"Ints7:NM_001306204:exon17:c.A2138G:p.H713R,Ints7:NM_001306203:exon18:c.A2138G:p.H713R,Ints7:NM_178632:exon19:c.A2510G:p.H837R"	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997917	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	192846378	12A2p6	cell line	sgMsh2	192846378	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	89	0	0	NA	exonic	Sertad4	nonsynonymous SNV	"Sertad4:NM_001177794:exon4:c.A1129T:p.M377L,Sertad4:NM_198247:exon4:c.A1129T:p.M377L"	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.999109	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	194649585	12A2p6	cell line	sgMsh2	194649585	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	79	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon3:c.T1318C:p.Y440H	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9984424	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	194780562	12A2p6	cell line	sgMsh2	194780562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	166	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon13:c.A2636G:p.H879R	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	0.864431017	1	0.9877155	CAT	nonsynonymous	CCAT	8	CCATCCAT	NA
M7_p20	chr1	194806431	12A2p6	cell line	sgMsh2	194806431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	50	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon28:c.A5014G:p.M1672V	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9921647	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	194812106	12A2p6	cell line	sgMsh2	194812106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	128	0	0	NA	exonic	Plxna2	nonsynonymous SNV	Plxna2:NM_008882:exon32:c.A5630G:p.Q1877R	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	2	1	1	0.9998993	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr1	195158695	12A2p6	cell line	sgMsh2	195158695	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	185	0	0	NA	exonic	Cr2	nonsynonymous SNV	"Cr2:NM_007758:exon7:c.T1288G:p.F430V,Cr2:NM_001368765:exon14:c.T2416G:p.F806V"	1qH6	chr1-85663222-195166209	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999958	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	3919204	12A2p6	cell line	sgMsh2	3919204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	274	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon4:c.A578G:p.K193R,Plekhg1:NM_001159942:exon5:c.A578G:p.K193R"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9999951	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	4418620	12A2p6	cell line	sgMsh2	4418620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	295	0	0	NA	exonic	Rmnd1	nonsynonymous SNV	"Rmnd1:NM_025343:exon5:c.A628G:p.I210V,Rmnd1:NM_001358796:exon6:c.A628G:p.I210V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.9999999	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	4512797	12A2p6	cell line	sgMsh2	4512797	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	97	0	0	NA	exonic	Ccdc170	nonsynonymous SNV	"Ccdc170:NM_001195672:exon2:c.C94G:p.L32V,Ccdc170:NM_001370992:exon2:c.C112G:p.L38V,Ccdc170:NM_001370993:exon2:c.C112G:p.L38V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	5022126	12A2p6	cell line	sgMsh2	5022126	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	33	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_022027:exon17:c.A2731T:p.I911F,Syne1:NM_001079686:exon55:c.A8914T:p.I2972F,Syne1:NM_001347711:exon146:c.A26317T:p.I8773F,Syne1:NM_001347732:exon146:c.A26281T:p.I8761F"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9799748	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	5204117	12A2p6	cell line	sgMsh2	5204117	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	49	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon89:c.C17122A:p.L5708M,Syne1:NM_001347732:exon89:c.C17101A:p.L5701M"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9917177	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	5270944	12A2p6	cell line	sgMsh2	5270944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	124	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon58:c.A9355G:p.M3119V,Syne1:NM_001347732:exon58:c.A9334G:p.M3112V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8616008	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	5289488	12A2p6	cell line	sgMsh2	5289488	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	40	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon55:c.G8722A:p.A2908T,Syne1:NM_001347732:exon55:c.G8701A:p.A2901T"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9863733	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	6890590	12A2p6	cell line	sgMsh2	6890590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Ipcef1	nonsynonymous SNV	"Ipcef1:NM_001170800:exon9:c.T1106C:p.M369T,Ipcef1:NM_001347225:exon9:c.T1118C:p.M373T"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9940451	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	8741496	12A2p6	cell line	sgMsh2	8741496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	54	0	0	NA	exonic	Sash1	nonsynonymous SNV	Sash1:NM_175155:exon14:c.T1645A:p.C549S	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9937253	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	9809188	12A2p6	cell line	sgMsh2	9809188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	71	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon15:c.A1467C:p.K489N	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9975657	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	11171883	12A2p6	cell line	sgMsh2	11171883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	264	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon14:c.A2974G:p.M992V,Shprh:NM_001284354:exon14:c.A2974G:p.M992V,Shprh:NM_172937:exon14:c.A2974G:p.M992V"	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	5.11E-08	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	12421645	12A2p6	cell line	sgMsh2	12421645	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	230	0	0	NA	exonic	Utrn	nonsynonymous SNV	Utrn:NM_011682:exon65:c.T9440G:p.L3147R	10qA1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	12941485	12A2p6	cell line	sgMsh2	12941485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	139	0	0	NA	exonic	Stx11	nonsynonymous SNV	"Stx11:NM_001163590:exon2:c.T494C:p.L165P,Stx11:NM_001163591:exon2:c.T494C:p.L165P,Stx11:NM_029075:exon3:c.T494C:p.L165P"	10qA2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999456	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	18473025	12A2p6	cell line	sgMsh2	18473025	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	173	0	0	NA	exonic	Nhsl1	nonsynonymous SNV	"Nhsl1:NM_001163592:exon2:c.G165T:p.E55D,Nhsl1:NM_173390:exon2:c.G309T:p.E103D"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9994348	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	82	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9986826	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	20357669	12A2p6	cell line	sgMsh2	20357669	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	125	0	0	NA	exonic	Mtfr2	nonsynonymous SNV	Mtfr2:NM_027930:exon6:c.A983C:p.N328T	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9995788	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	20979609	12A2p6	cell line	sgMsh2	20979609	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	167	0	0	NA	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001358561:exon11:c.G1816T:p.G606C,Ahi1:NM_026203:exon11:c.G1816T:p.G606C"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	21296145	12A2p6	cell line	sgMsh2	21296145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	74	0	0	NA	exonic	Hbs1l	synonymous SNV	"Hbs1l:NM_001042593:exon1:c.T12C:p.H4H,Hbs1l:NM_001145209:exon1:c.T12C:p.H4H,Hbs1l:NM_019702:exon1:c.T12C:p.H4H"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr10	21382316	12A2p6	cell line	sgMsh2	21382316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	98	0	0	NA	exonic	Aldh8a1	nonsynonymous SNV	Aldh8a1:NM_178713:exon3:c.C311T:p.T104I	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9994612	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	22664493	12A2p6	cell line	sgMsh2	22664493	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	107	0	0	NA	exonic	Slc2a12	synonymous SNV	Slc2a12:NM_178934:exon2:c.G246A:p.E82E	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr10	23157368	12A2p6	cell line	sgMsh2	23157368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	101	0	0	NA	exonic	Eya4	nonsynonymous SNV	"Eya4:NM_001347372:exon8:c.A539G:p.K180R,Eya4:NM_010167:exon8:c.A539G:p.K180R"	10qA3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	59	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9952486	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	24596360	12A2p6	cell line	sgMsh2	24596360	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.246	137	0	0	NA	exonic	Ccn2	synonymous SNV	Ccn2:NM_010217:exon3:c.A300G:p.A100A	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999391	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr10	27041118	12A2p6	cell line	sgMsh2	27041118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	154	0	0	NA	exonic	Lama2	synonymous SNV	Lama2:NM_008481:exon47:c.T6810C:p.D2270D	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999765	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr10	28465801	12A2p6	cell line	sgMsh2	28465801	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	194	0	0	NA	exonic	Ptprk	nonsynonymous SNV	"Ptprk:NM_001359355:exon8:c.G1203T:p.Q401H,Ptprk:NM_001359356:exon8:c.G1203T:p.Q401H,Ptprk:NM_008983:exon8:c.G1203T:p.Q401H"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999975	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	28587027	12A2p6	cell line	sgMsh2	28587027	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	157	0	0	NA	exonic	Ptprk	synonymous SNV	"Ptprk:NM_001359356:exon26:c.T3672C:p.F1224F,Ptprk:NM_008983:exon27:c.T3708C:p.F1236F,Ptprk:NM_001359355:exon29:c.T3750C:p.F1250F"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9928885	TTT	synonymous	T	5	TTTTT	NA
M7_p20	chr10	29224559	12A2p6	cell line	sgMsh2	29224559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	149	0	0	NA	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon5:c.A927G:p.Q309Q	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999689	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr10	29227239	12A2p6	cell line	sgMsh2	29227239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	84	0	0	NA	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon6:c.A1815G:p.K605K	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr10	30614755	12A2p6	cell line	sgMsh2	30614755	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.16	42	0	0	NA	exonic	Hint3	nonsynonymous SNV	Hint3:NM_025798:exon2:c.A226G:p.I76V	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.747616015	1	0.7547755	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	31379230	12A2p6	cell line	sgMsh2	31379230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	165	0	0	NA	exonic	Tpd52l1	synonymous SNV	"Tpd52l1:NM_001359364:exon2:c.G120A:p.K40K,Tpd52l1:NM_001359365:exon2:c.G120A:p.K40K,Tpd52l1:NM_001359366:exon2:c.G120A:p.K40K,Tpd52l1:NM_009413:exon2:c.G120A:p.K40K"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999873	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr10	33186688	12A2p6	cell line	sgMsh2	33186688	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.156	50	0	0	NA	exonic	Trdn	nonsynonymous SNV	"Trdn:NM_001364696:exon7:c.A598G:p.M200V,Trdn:NM_001364697:exon7:c.A598G:p.M200V,Trdn:NM_029726:exon7:c.A598G:p.M200V"	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.728925614	1	7.07E-06	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	33233877	12A2p6	cell line	sgMsh2	33233877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	170	0	0	NA	exonic	Trdn	synonymous SNV	Trdn:NM_029726:exon10:c.A870G:p.P290P	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9997669	CAC	synonymous	CCA	9	CCACCACCA	NA
M7_p20	chr10	33444726	12A2p6	cell line	sgMsh2	33444726	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	40	0	0	NA	exonic	Trdn	stopgain	Trdn:NM_029726:exon30:c.G1654T:p.G552X	10qA4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9863733	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	33930261	12A2p6	cell line	sgMsh2	33930261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	186	0	0	NA	exonic	Zup1	nonsynonymous SNV	"Zup1:NM_001359455:exon7:c.T1042C:p.F348L,Zup1:NM_001359456:exon7:c.T1042C:p.F348L,Zup1:NM_028287:exon7:c.T1042C:p.F348L"	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	34126243	12A2p6	cell line	sgMsh2	34126243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	272	0	0	NA	exonic	Calhm6	synonymous SNV	Calhm6:NM_175449:exon2:c.A843G:p.E281E	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	3.30E-08	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr10	34127600	12A2p6	cell line	sgMsh2	34127600	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.571	10	0	0	NA	exonic	Calhm6	nonsynonymous SNV	Calhm6:NM_175449:exon1:c.A310G:p.T104A	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.930725	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	34298486	12A2p6	cell line	sgMsh2	34298486	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	0	0	NA	exonic	Tspyl4	nonsynonymous SNV	Tspyl4:NM_030203:exon1:c.C973T:p.H325Y	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9884537	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	34298524	12A2p6	cell line	sgMsh2	34298524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	42	0	0	NA	exonic	Tspyl4	synonymous SNV	Tspyl4:NM_030203:exon1:c.T1011C:p.N337N	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	ATA	synonymous	AGGG	8	AGGGAGGG	NA
M7_p20	chr10	34411414	12A2p6	cell line	sgMsh2	34411414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	94	0	0	NA	exonic	Nt5dc1	nonsynonymous SNV	Nt5dc1:NM_176968:exon2:c.T139C:p.Y47H	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	39082766	12A2p6	cell line	sgMsh2	39082766	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	75	0	0	NA	exonic	Lama4	frameshift deletion	Lama4:NM_010681:exon26:c.3581delG:p.C1196fs*0	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.981246019	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7_p20	chr10	40003010	12A2p6	cell line	sgMsh2	40003010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	247	0	0	NA	exonic	Mfsd4b1	nonsynonymous SNV	Mfsd4b1:NM_144821:exon4:c.T890C:p.I297T	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	40254307	12A2p6	cell line	sgMsh2	40254307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	144	0	0	NA	exonic	Gtf3c6	synonymous SNV	"Gtf3c6:NM_001359491:exon4:c.T231C:p.D77D,Gtf3c6:NM_001359492:exon4:c.T42C:p.D14D,Gtf3c6:NM_001359493:exon4:c.T42C:p.D14D,Gtf3c6:NM_026113:exon4:c.T228C:p.D76D"	10qB1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.850413217	1	0.9693518	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	134	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.999928	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	44441731	12A2p6	cell line	sgMsh2	44441731	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	30	0	0	NA	exonic	Prdm1	synonymous SNV	Prdm1:NM_007548:exon5:c.C1095G:p.G365G	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9764031	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr10	45711439	12A2p6	cell line	sgMsh2	45711439	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	157	0	0	NA	exonic	Hace1	nonsynonymous SNV	Hace1:NM_172473:exon24:c.A2633C:p.N878T	10qB2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9971111	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	49113385	12A2p6	cell line	sgMsh2	49113385	-	T	Insertion	Strelka2;Vardict	2	0.2647	102	0	0	NA	exonic	Grik2	frameshift insertion	"Grik2:NM_001111268:exon16:c.2546dupA:p.N849Kfs*10,Grik2:NM_001358866:exon16:c.2546dupA:p.N849Kfs*10,Grik2:NM_010349:exon16:c.2546dupA:p.N849Kfs*25"	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CGT	frameshift	T	8	TTTTTTTT	1
M7_p20	chr10	49132856	12A2p6	cell line	sgMsh2	49132856	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	167	0	0	NA	exonic	Grik2	synonymous SNV	"Grik2:NM_001111268:exon15:c.A2134C:p.R712R,Grik2:NM_001358866:exon15:c.A2134C:p.R712R,Grik2:NM_010349:exon15:c.A2134C:p.R712R"	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	CTG	synonymous	CTG	8	CTGCTGCT	NA
M7_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	216	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	51621056	12A2p6	cell line	sgMsh2	51621056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	253	0	0	NA	exonic	Gprc6a	nonsynonymous SNV	Gprc6a:NM_153071:exon4:c.T1390C:p.F464L	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	53021917	12A2p6	cell line	sgMsh2	53021917	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	113	0	0	NA	exonic	Slc35f1	nonsynonymous SNV	Slc35f1:NM_178675:exon3:c.A423C:p.E141D	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997671	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	53319635	12A2p6	cell line	sgMsh2	53319635	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.279	120	0	0	NA	exonic	Cep85l	frameshift insertion	Cep85l:NM_001204983:exon4:c.1104dupA:p.E369Rfs*11	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TCT	frameshift	NA	NA	NA	1
M7_p20	chr10	53319685	12A2p6	cell line	sgMsh2	53319685	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	122	0	0	NA	exonic	Cep85l	nonsynonymous SNV	Cep85l:NM_001204983:exon4:c.C1055A:p.P352H	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	53750839	12A2p6	cell line	sgMsh2	53750839	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	34	0	0	NA	exonic	Fam184a	synonymous SNV	Fam184a:NM_001081428:exon1:c.T42C:p.G14G	10qB3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.747616015	1	0.7857353	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr10	57512133	12A2p6	cell line	sgMsh2	57512133	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	195	0	0	NA	exonic	Hsf2	nonsynonymous SNV	Hsf2:NM_008297:exon12:c.C1489T:p.L497F	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999976	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	57512156	12A2p6	cell line	sgMsh2	57512156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	168	0	0	NA	exonic	Hsf2	synonymous SNV	Hsf2:NM_008297:exon12:c.T1512C:p.A504A	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr10	58476919	12A2p6	cell line	sgMsh2	58476919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	197	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.A3460G:p.S1154G	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999979	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	60773801	12A2p6	cell line	sgMsh2	60773801	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	77	0	0	NA	exonic	Unc5b	nonsynonymous SNV	"Unc5b:NM_001359273:exon10:c.T1682G:p.I561S,Unc5b:NM_029770:exon11:c.T1715G:p.I572S"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9982584	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	61348575	12A2p6	cell line	sgMsh2	61348575	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	39	0	0	NA	exonic	Pald1	synonymous SNV	"Pald1:NM_001372378:exon6:c.G762A:p.E254E,Pald1:NM_013753:exon6:c.G762A:p.E254E"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9856008	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr10	62252883	12A2p6	cell line	sgMsh2	62252883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	37	0	0	NA	exonic	Tacr2	synonymous SNV	Tacr2:NM_009314:exon1:c.C66T:p.G22G	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9839242	GCG	synonymous	NA	NA	NA	NA
M7_p20	chr10	62563277	12A2p6	cell line	sgMsh2	62563277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	275	0	0	NA	exonic	Kifbp	nonsynonymous SNV	Kifbp:NM_028197:exon6:c.T937C:p.Y313H	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	2.81E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	62814567	12A2p6	cell line	sgMsh2	62814567	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	139	0	0	NA	exonic	Tet1	nonsynonymous SNV	Tet1:NM_001253857:exon11:c.T4861C:p.Y1621H	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.266338205	3	0.9999987	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	63246002	12A2p6	cell line	sgMsh2	63246002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	109	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_001359484:exon3:c.A103G:p.K35E,Herc4:NM_026101:exon3:c.A103G:p.K35E,Herc4:NM_030114:exon3:c.A103G:p.K35E"	10qB4	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr10	67021863	12A2p6	cell line	sgMsh2	67021863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	85	0	0	NA	exonic	Reep3	nonsynonymous SNV	"Reep3:NM_001204915:exon6:c.A448G:p.S150G,Reep3:NM_178606:exon6:c.A448G:p.S150G"	10qB5.1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988859	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	67219678	12A2p6	cell line	sgMsh2	67219678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	243	0	0	NA	exonic	Jmjd1c	synonymous SNV	"Jmjd1c:NM_001242396:exon7:c.T1194C:p.N398N,Jmjd1c:NM_207221:exon8:c.T1737C:p.N579N"	10qB5.1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999923	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr10	69340868	12A2p6	cell line	sgMsh2	69340868	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	99	0	0	NA	exonic	Cdk1	nonsynonymous SNV	Cdk1:NM_007659:exon6:c.T500C:p.L167P	10qB5.3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9994112	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	69808417	12A2p6	cell line	sgMsh2	69808417	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	175	0	0	NA	exonic	Ank3	nonsynonymous SNV	"Ank3:NM_146005:exon2:c.C65T:p.S22F,Ank3:NM_170688:exon2:c.C65T:p.S22F,Ank3:NM_170689:exon2:c.C65T:p.S22F,Ank3:NM_170690:exon2:c.C65T:p.S22F,Ank3:NM_170728:exon2:c.C65T:p.S22F,Ank3:NM_170729:exon2:c.C65T:p.S22F"	10qB5.3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9999879	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	75263363	12A2p6	cell line	sgMsh2	75263363	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	122	0	0	NA	exonic	Specc1l	nonsynonymous SNV	"Specc1l:NM_153406:exon9:c.C2648A:p.P883H,Specc1l:NM_001145826:exon12:c.C2699A:p.P900H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	75585276	12A2p6	cell line	sgMsh2	75585276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	104	0	0	NA	exonic	Ggt1	nonsynonymous SNV	"Ggt1:NM_008116:exon10:c.A1324G:p.I442V,Ggt1:NM_001305992:exon11:c.A1324G:p.I442V,Ggt1:NM_001379540:exon11:c.A1324G:p.I442V,Ggt1:NM_001379541:exon11:c.A1324G:p.I442V,Ggt1:NM_001379537:exon12:c.A1324G:p.I442V,Ggt1:NM_001379538:exon12:c.A1324G:p.I442V,Ggt1:NM_001379539:exon12:c.A1324G:p.I442V"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9995515	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	75954626	12A2p6	cell line	sgMsh2	75954626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	58	0	0	NA	exonic	Gm5134	synonymous SNV	Gm5134:NM_198635:exon1:c.T55C:p.L19L	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9607478	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr10	76357079	12A2p6	cell line	sgMsh2	76357079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	145	0	0	NA	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon37:c.C8035T:p.H2679Y,Pcnt:NM_008787:exon37:c.C8089T:p.H2697Y"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9994098	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	76389176	12A2p6	cell line	sgMsh2	76389176	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	77	0	0	NA	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon25:c.T5493A:p.S1831R,Pcnt:NM_008787:exon25:c.T5493A:p.S1831R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9962148	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	76504413	12A2p6	cell line	sgMsh2	76504413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	21	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon22:c.T4517C:p.V1506A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9615551	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	77065287	12A2p6	cell line	sgMsh2	77065287	G	-	Deletion	Mutect2;Vardict	2	0.267	17	0	0	NA	exonic	Col18a1	frameshift deletion	"Col18a1:NM_001109991:exon29:c.3092delC:p.P1031Lfs*65,Col18a1:NM_009929:exon30:c.2456delC:p.P819Lfs*65"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7_p20	chr10	77548693	12A2p6	cell line	sgMsh2	77548693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	49	0	0	NA	exonic	Itgb2	nonsynonymous SNV	Itgb2:NM_008404:exon6:c.A647G:p.Q216R	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9904642	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	77981777	12A2p6	cell line	sgMsh2	77981777	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	34	0	0	NA	exonic	Cfap410	nonsynonymous SNV	Cfap410:NM_026431:exon4:c.C337T:p.R113C	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	78071997	12A2p6	cell line	sgMsh2	78071997	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	158	0	0	NA	exonic	Icosl	synonymous SNV	Icosl:NM_015790:exon3:c.T390A:p.P130P	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999812	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr10	78752673	12A2p6	cell line	sgMsh2	78752673	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	14	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon1:c.A302T:p.K101M	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9440888	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	78801882	12A2p6	cell line	sgMsh2	78801882	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	83	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.C1241A:p.P414H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	79377807	12A2p6	cell line	sgMsh2	79377807	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	416	0	0	NA	exonic	Vmn2r82	stopgain	Vmn2r82:NM_001101572:exon2:c.C226T:p.R76X	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	79542433	12A2p6	cell line	sgMsh2	79542433	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	79	0	0	NA	exonic	Mier2	synonymous SNV	"Mier2:NM_001316699:exon12:c.G1155A:p.R385R,Mier2:NM_027422:exon12:c.G1149A:p.R383R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9812314	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr10	79675488	12A2p6	cell line	sgMsh2	79675488	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	40	0	0	NA	exonic	Tpgs1	nonsynonymous SNV	Tpgs1:NM_148934:exon2:c.T427C:p.Y143H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9863733	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	79887570	12A2p6	cell line	sgMsh2	79887570	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.444	8	0	0	NA	exonic	Elane	nonsynonymous SNV	Elane:NM_015779:exon4:c.A368G:p.N123S	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9226809	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	79900192	12A2p6	cell line	sgMsh2	79900192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	64	0	0	NA	exonic	Med16	nonsynonymous SNV	"Med16:NM_001163276:exon7:c.A1118G:p.D373G,Med16:NM_001359629:exon7:c.A1121G:p.D374G,Med16:NM_198107:exon7:c.A1121G:p.D374G"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9964035	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	79997840	12A2p6	cell line	sgMsh2	79997840	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	30	0	0	NA	exonic	Abca7	frameshift deletion	"Abca7:NM_001347081:exon3:c.138delC:p.P48Lfs*29,Abca7:NM_013850:exon3:c.138delC:p.P48Lfs*29"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr10	80024846	12A2p6	cell line	sgMsh2	80024846	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	23	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon10:c.A1018T:p.N340Y,Arhgap45:NM_001142701:exon11:c.A1366T:p.N456Y,Arhgap45:NM_001347074:exon11:c.A1399T:p.N467Y"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.965485	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr10	80060204	12A2p6	cell line	sgMsh2	80060204	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	90	0	0	NA	exonic	Sbno2	nonsynonymous SNV	"Sbno2:NM_001359635:exon25:c.A2827T:p.S943C,Sbno2:NM_183426:exon25:c.A2827T:p.S943C"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9991574	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80127972	12A2p6	cell line	sgMsh2	80127972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	62	0	0	NA	exonic	Stk11	nonsynonymous SNV	"Stk11:NM_001301853:exon8:c.A989G:p.D330G,Stk11:NM_001301854:exon8:c.A617G:p.D206G,Stk11:NM_011492:exon8:c.A989G:p.D330G"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80293842	12A2p6	cell line	sgMsh2	80293842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	102	0	0	NA	exonic	Rps15	nonsynonymous SNV	"Rps15:NM_001310726:exon3:c.A209G:p.Y70C,Rps15:NM_009091:exon3:c.A290G:p.Y97C"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995691	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80314629	12A2p6	cell line	sgMsh2	80314629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	84	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.G5429A:p.R1810H,Apc2:NM_001372237:exon15:c.G5516A:p.R1839H,Apc2:NM_001372238:exon15:c.G5519A:p.R1840H,Apc2:NM_001372239:exon15:c.G5444A:p.R1815H,Apc2:NM_001372240:exon15:c.G5558A:p.R1853H,Apc2:NM_001372241:exon15:c.G5555A:p.R1852H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80520339	12A2p6	cell line	sgMsh2	80520339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	173	0	0	NA	exonic	Atp8b3	nonsynonymous SNV	Atp8b3:NM_026094:exon28:c.A3538G:p.I1180V	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999919	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80544051	12A2p6	cell line	sgMsh2	80544051	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	34	0	0	NA	exonic	Rexo1	nonsynonymous SNV	Rexo1:NM_025852:exon10:c.C2944T:p.R982C	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	CGC	nonsynonymous	CGCA	8	CGCACGCA	NA
M7_p20	chr10	80639826	12A2p6	cell line	sgMsh2	80639826	A	C	SNV	Mutect2;Vardict	2	0.136	31	0	0	NA	exonic	Csnk1g2	nonsynonymous SNV	"Csnk1g2:NM_134002:exon10:c.A1226C:p.N409T,Csnk1g2:NM_001159591:exon11:c.A1145C:p.N382T"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.635473613	1	0.5716605	AAC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr10	80730907	12A2p6	cell line	sgMsh2	80730907	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	290	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon3:c.T240G:p.I80M	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	1.27E-08	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80789091	12A2p6	cell line	sgMsh2	80789091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	20	0	0	NA	exonic	Dot1l	nonsynonymous SNV	Dot1l:NM_199322:exon24:c.T3392C:p.M1131T	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9594315	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	80804747	12A2p6	cell line	sgMsh2	80804747	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	14	0	0	NA	exonic	Sf3a2	nonsynonymous SNV	Sf3a2:NM_013651:exon9:c.C1391T:p.P464L	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9440888	CCC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr10	81081397	12A2p6	cell line	sgMsh2	81081397	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	39	0	0	NA	exonic	Thop1	nonsynonymous SNV	Thop1:NM_022653:exon11:c.G1733A:p.R578Q	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	81118183	12A2p6	cell line	sgMsh2	81118183	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	148	0	0	NA	exonic	Map2k2	nonsynonymous SNV	"Map2k2:NM_001347144:exon4:c.A482C:p.E161A,Map2k2:NM_023138:exon4:c.A482C:p.E161A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999671	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	81144365	12A2p6	cell line	sgMsh2	81144365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	38	0	0	NA	exonic	Zbtb7a	nonsynonymous SNV	Zbtb7a:NM_010731:exon2:c.T392A:p.I131N	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9847852	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	81157349	12A2p6	cell line	sgMsh2	81157349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	83	0	0	NA	exonic	Pias4	nonsynonymous SNV	Pias4:NM_021501:exon6:c.T658C:p.Y220H	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	81509305	12A2p6	cell line	sgMsh2	81509305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	143	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T725C:p.L242P	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9998153	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	81588933	12A2p6	cell line	sgMsh2	81588933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	67	0	0	NA	exonic	Tle2	nonsynonymous SNV	"Tle2:NM_001252401:exon18:c.T1988C:p.V663A,Tle2:NM_019725:exon18:c.T2093C:p.V698A"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	82644682	12A2p6	cell line	sgMsh2	82644682	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	139	0	0	NA	exonic	Tdg	nonsynonymous SNV	"Tdg:NM_001358517:exon7:c.A798C:p.Q266H,Tdg:NM_011561:exon7:c.A726C:p.Q242H,Tdg:NM_172552:exon7:c.A798C:p.Q266H"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.644818813	2	0.995546	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	83191774	12A2p6	cell line	sgMsh2	83191774	T	C	SNV	Mutect2;MuSe;Vardict	3	0.272	27	0	0	NA	exonic	Chst11	nonsynonymous SNV	Chst11:NM_021439:exon3:c.T1034C:p.V345A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9722123	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	86467153	12A2p6	cell line	sgMsh2	86467153	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.173	35	0	0	NA	exonic	Syn3	nonsynonymous SNV	"Syn3:NM_001164495:exon2:c.A137G:p.Q46R,Syn3:NM_013722:exon2:c.A137G:p.Q46R"	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.808359816	1	0.8736324	CTG	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr10	86934874	12A2p6	cell line	sgMsh2	86934874	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	179	0	0	NA	exonic	Stab2	nonsynonymous SNV	Stab2:NM_138673:exon24:c.A2644G:p.T882A	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999942	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	88758365	12A2p6	cell line	sgMsh2	88758365	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	47	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon49:c.A6497T:p.N2166I	10qC1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.822377616	1	0.8907572	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	89805342	12A2p6	cell line	sgMsh2	89805342	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	191	0	0	NA	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.2374delT:p.L793fs*0	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr10	91001014	12A2p6	cell line	sgMsh2	91001014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Apaf1	nonsynonymous SNV	"Apaf1:NM_001042558:exon23:c.T3200C:p.V1067A,Apaf1:NM_001282947:exon23:c.T3167C:p.V1056A,Apaf1:NM_009684:exon23:c.T3200C:p.V1067A"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9982584	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	91119546	12A2p6	cell line	sgMsh2	91119546	T	C	SNV	Mutect2;MuSe;Vardict	3	0.055	136	0	0	NA	exonic	Slc25a3	nonsynonymous SNV	Slc25a3:NM_133668:exon4:c.A428G:p.Y143C	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.256993005	3	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	93516261	12A2p6	cell line	sgMsh2	93516261	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	216	0	0	NA	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon20:c.C1913T:p.A638V	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	93534607	12A2p6	cell line	sgMsh2	93534607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	85	0	0	NA	exonic	Amdhd1	nonsynonymous SNV	Amdhd1:NM_027908:exon4:c.T368C:p.V123A	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9988859	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	93974002	12A2p6	cell line	sgMsh2	93974002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	69	0	0	NA	exonic	Vezt	nonsynonymous SNV	"Vezt:NM_001304572:exon11:c.A1664T:p.E555V,Vezt:NM_001304575:exon11:c.A1676T:p.E559V,Vezt:NM_001304720:exon11:c.A1664T:p.E555V,Vezt:NM_172538:exon11:c.A1664T:p.E555V"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	93996912	12A2p6	cell line	sgMsh2	93996912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	67	0	0	NA	exonic	Vezt	synonymous SNV	"Vezt:NM_001304572:exon5:c.A636G:p.R212R,Vezt:NM_001304575:exon5:c.A636G:p.R212R,Vezt:NM_001304720:exon5:c.A636G:p.R212R,Vezt:NM_172538:exon5:c.A636G:p.R212R"	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.7605356	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr10	94195270	12A2p6	cell line	sgMsh2	94195270	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.269	93	0	0	NA	exonic	Nr2c1	synonymous SNV	Nr2c1:NM_011629:exon14:c.A1692G:p.V564V	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr10	94852685	12A2p6	cell line	sgMsh2	94852685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	188	0	0	NA	exonic	Plxnc1	nonsynonymous SNV	Plxnc1:NM_018797:exon10:c.T2030C:p.L677S	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999965	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	96011018	12A2p6	cell line	sgMsh2	96011018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	23	0	0	NA	exonic	Eea1	nonsynonymous SNV	Eea1:NM_001001932:exon11:c.A1159G:p.T387A	10qC2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.965485	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	102388635	12A2p6	cell line	sgMsh2	102388635	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	325	0	0	NA	exonic	Mgat4c	nonsynonymous SNV	"Mgat4c:NM_026243:exon4:c.A709T:p.I237F,Mgat4c:NM_001162368:exon6:c.A709T:p.I237F,Mgat4c:NM_001162369:exon6:c.A709T:p.I237F,Mgat4c:NM_001205098:exon8:c.A709T:p.I237F"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	2.65E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	103215634	12A2p6	cell line	sgMsh2	103215634	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	404	0	0	NA	exonic	Lrriq1	nonsynonymous SNV	"Lrriq1:NM_001163559:exon8:c.C1256A:p.A419D,Lrriq1:NM_001361058:exon8:c.C1256A:p.A419D,Lrriq1:NM_029134:exon8:c.C1256A:p.A419D"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.163541003	3	1	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	103393986	12A2p6	cell line	sgMsh2	103393986	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	189	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon4:c.C533A:p.P178H,Slc6a15:NM_001358821:exon4:c.C533A:p.P178H,Slc6a15:NM_175328:exon5:c.C533A:p.P178H"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999967	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	103404331	12A2p6	cell line	sgMsh2	103404331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	172	0	0	NA	exonic	Slc6a15	nonsynonymous SNV	"Slc6a15:NM_001252330:exon7:c.A914G:p.Q305R,Slc6a15:NM_001358821:exon7:c.A914G:p.Q305R,Slc6a15:NM_175328:exon8:c.A914G:p.Q305R"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9997836	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	105413620	12A2p6	cell line	sgMsh2	105413620	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	77	0	0	NA	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C251A:p.P84H	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9975684	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	105763431	12A2p6	cell line	sgMsh2	105763431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	148	0	0	NA	exonic	Mettl25	synonymous SNV	"Mettl25:NM_207522:exon12:c.T1732C:p.L578L,Mettl25:NM_001359640:exon13:c.T1297C:p.L433L,Mettl25:NM_001359642:exon13:c.T1297C:p.L433L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.7957857	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr10	106893435	12A2p6	cell line	sgMsh2	106893435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	149	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359683:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359684:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359685:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359690:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359691:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359692:exon20:c.T2436C:p.H812H,Ppfia2:NM_001359694:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359695:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359697:exon20:c.T2424C:p.H808H,Ppfia2:NM_001359698:exon20:c.T2421C:p.H807H,Ppfia2:NM_001359677:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359678:exon21:c.T2442C:p.H814H,Ppfia2:NM_001359680:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359681:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359682:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359686:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359687:exon21:c.T2445C:p.H815H,Ppfia2:NM_001359688:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359689:exon21:c.T2433C:p.H811H,Ppfia2:NM_001359693:exon21:c.T2430C:p.H810H,Ppfia2:NM_001359696:exon21:c.T2430C:p.H810H,Ppfia2:NM_001205341:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359672:exon22:c.T2655C:p.H885H,Ppfia2:NM_001359673:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359674:exon22:c.T2643C:p.H881H,Ppfia2:NM_001359675:exon22:c.T2646C:p.H882H,Ppfia2:NM_001359676:exon22:c.T2643C:p.H881H,Ppfia2:NM_177373:exon22:c.T2643C:p.H881H"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999689	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr10	106896447	12A2p6	cell line	sgMsh2	106896447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	138	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359679:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359683:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359684:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359685:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359690:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359691:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359692:exon21:c.T2644C:p.L882L,Ppfia2:NM_001359694:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359695:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359697:exon21:c.T2632C:p.L878L,Ppfia2:NM_001359698:exon21:c.T2629C:p.L877L,Ppfia2:NM_001359677:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359678:exon22:c.T2650C:p.L884L,Ppfia2:NM_001359680:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359681:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359682:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359686:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359687:exon22:c.T2653C:p.L885L,Ppfia2:NM_001359688:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359689:exon22:c.T2641C:p.L881L,Ppfia2:NM_001359693:exon22:c.T2638C:p.L880L,Ppfia2:NM_001359696:exon22:c.T2638C:p.L880L,Ppfia2:NM_001205341:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359672:exon23:c.T2863C:p.L955L,Ppfia2:NM_001359673:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359674:exon23:c.T2851C:p.L951L,Ppfia2:NM_001359675:exon23:c.T2854C:p.L952L,Ppfia2:NM_001359676:exon23:c.T2851C:p.L951L,Ppfia2:NM_177373:exon23:c.T2851C:p.L951L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999424	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr10	107575960	12A2p6	cell line	sgMsh2	107575960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	453	0	0	NA	exonic	Ptprq	synonymous SNV	"Ptprq:NM_001081432:exon32:c.T5544C:p.D1848D,Ptprq:NM_001370987:exon32:c.T5547C:p.D1849D"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr10	109751457	12A2p6	cell line	sgMsh2	109751457	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	168	0	0	NA	exonic	Nav3	nonsynonymous SNV	"Nav3:NM_001081035:exon20:c.C4667A:p.S1556Y,Nav3:NM_001368815:exon20:c.C4667A:p.S1556Y"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	110782288	12A2p6	cell line	sgMsh2	110782288	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	40	0	0	NA	exonic	E2f7	nonsynonymous SNV	"E2f7:NM_001358560:exon12:c.C2213T:p.P738L,E2f7:NM_178609:exon12:c.C2213T:p.P738L"	10qD1	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9863733	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	112211131	12A2p6	cell line	sgMsh2	112211131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	199	0	0	NA	exonic	Caps2	nonsynonymous SNV	"Caps2:NM_178278:exon16:c.T1541G:p.I514S,Caps2:NM_001310675:exon17:c.T1415G:p.I472S"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999981	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	112456180	12A2p6	cell line	sgMsh2	112456180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	83	0	0	NA	exonic	Kcnc2	synonymous SNV	"Kcnc2:NM_001025581:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359752:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001359753:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379643:exon3:c.G1272A:p.Q424Q,Kcnc2:NM_001379644:exon3:c.G1272A:p.Q424Q"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9987542	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr10	112461980	12A2p6	cell line	sgMsh2	112461980	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	128	0	0	NA	exonic	Kcnc2	nonsynonymous SNV	Kcnc2:NM_001025581:exon5:c.C1808A:p.P603H	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9791827	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	115229164	12A2p6	cell line	sgMsh2	115229164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	112	0	0	NA	exonic	Tbc1d15	nonsynonymous SNV	Tbc1d15:NM_025706:exon5:c.T515C:p.L172P	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997537	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	117074208	12A2p6	cell line	sgMsh2	117074208	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.243	191	0	0	NA	exonic	Frs2	synonymous SNV	Frs2:NM_177798:exon10:c.A1248T:p.T416T	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.999997	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr10	117074210	12A2p6	cell line	sgMsh2	117074210	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.243	191	0	0	NA	exonic	Frs2	nonsynonymous SNV	Frs2:NM_177798:exon10:c.A1246G:p.T416A	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.999997	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	117362129	12A2p6	cell line	sgMsh2	117362129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	69	0	0	NA	exonic	Cpsf6	synonymous SNV	"Cpsf6:NM_001013391:exon5:c.A579C:p.S193S,Cpsf6:NM_001310609:exon5:c.A579C:p.S193S"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	107	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	119212091	12A2p6	cell line	sgMsh2	119212091	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	128	0	0	NA	exonic	Cand1	nonsynonymous SNV	Cand1:NM_027994:exon10:c.T1493G:p.L498R	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.752288615	2	0.6402734	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	120102859	12A2p6	cell line	sgMsh2	120102859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	174	0	0	NA	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon5:c.A1709G:p.D570G	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9914284	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	120925957	12A2p6	cell line	sgMsh2	120925957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	173	0	0	NA	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon11:c.C2492T:p.A831V	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999919	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	121553926	12A2p6	cell line	sgMsh2	121553926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	71	0	0	NA	exonic	Tbk1	synonymous SNV	Tbk1:NM_019786:exon14:c.A1620G:p.E540E	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9975657	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr10	121792770	12A2p6	cell line	sgMsh2	121792770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	59	0	0	NA	exonic	Srgap1	nonsynonymous SNV	"Srgap1:NM_001081037:exon20:c.A2425G:p.T809A,Srgap1:NM_001242411:exon20:c.A2356G:p.T786A"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.9898302	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	123006072	12A2p6	cell line	sgMsh2	123006072	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	218	0	0	NA	exonic	Mon2	nonsynonymous SNV	"Mon2:NM_001163025:exon31:c.G4615T:p.G1539C,Mon2:NM_153395:exon31:c.G4612T:p.G1538C,Mon2:NM_001163024:exon32:c.G4633T:p.G1545C"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	123163632	12A2p6	cell line	sgMsh2	123163632	T	-	Deletion	Mutect2;Vardict	2	0.196	233	0	0	NA	exonic	Usp15	frameshift deletion	"Usp15:NM_001301628:exon6:c.644delA:p.N215Mfs*14,Usp15:NM_027604:exon6:c.644delA:p.N215Mfs*43"	10qD2	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.915829618	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr10	125230903	12A2p6	cell line	sgMsh2	125230903	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	108	0	0	NA	exonic	Slc16a7	nonsynonymous SNV	"Slc16a7:NM_001358496:exon5:c.C866T:p.A289V,Slc16a7:NM_001358915:exon5:c.C866T:p.A289V,Slc16a7:NM_011391:exon6:c.C866T:p.A289V"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9890422	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	56	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9943856	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr10	127041992	12A2p6	cell line	sgMsh2	127041992	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.668	6	0	0	NA	exonic	Mettl1	nonsynonymous SNV	Mettl1:NM_010792:exon1:c.C14A:p.A5D	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	0.9132446	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127169983	12A2p6	cell line	sgMsh2	127169983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	92	0	0	NA	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon6:c.T826C:p.Y276H,B4galnt1:NM_001358577:exon7:c.T718C:p.Y240H,B4galnt1:NM_027739:exon7:c.T925C:p.Y309H,B4galnt1:NM_008080:exon8:c.T817C:p.Y273H"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992465	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127171079	12A2p6	cell line	sgMsh2	127171079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	48	0	0	NA	exonic	B4galnt1	nonsynonymous SNV	"B4galnt1:NM_001358578:exon8:c.T1313C:p.V438A,B4galnt1:NM_001358577:exon9:c.T1205C:p.V402A,B4galnt1:NM_027739:exon9:c.T1412C:p.V471A,B4galnt1:NM_008080:exon10:c.T1304C:p.V435A"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9912455	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127308565	12A2p6	cell line	sgMsh2	127308565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	31	0	0	NA	exonic	Mars1	nonsynonymous SNV	"Mars1:NM_001003913:exon6:c.T605C:p.L202P,Mars1:NM_001171582:exon6:c.T605C:p.L202P"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9776579	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127444363	12A2p6	cell line	sgMsh2	127444363	A	-	Deletion	Strelka2;Vardict	2	0.2857	35	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359243:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359245:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359246:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_027900:exon2:c.53delA:p.K20Nfs*6,R3hdm2:NM_001168292:exon3:c.53delA:p.K20Nfs*6,R3hdm2:NM_001359244:exon4:c.53delA:p.K20Nfs*6"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M7_p20	chr10	127518121	12A2p6	cell line	sgMsh2	127518121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	80	0	0	NA	exonic	Shmt2	nonsynonymous SNV	"Shmt2:NM_001252316:exon11:c.T1282G:p.L428V,Shmt2:NM_028230:exon11:c.T1291G:p.L431V"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.998527	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127553800	12A2p6	cell line	sgMsh2	127553800	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon59:c.A9365T:p.K3122M	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127557203	12A2p6	cell line	sgMsh2	127557203	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	50	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon50:c.A8185T:p.T2729S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	127898691	12A2p6	cell line	sgMsh2	127898691	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	99	0	0	NA	exonic	Sdr9c7	nonsynonymous SNV	Sdr9c7:NM_027301:exon1:c.A47T:p.N16I	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	AAT	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr10	128048308	12A2p6	cell line	sgMsh2	128048308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	209	0	0	NA	exonic	Naca	nonsynonymous SNV	"Naca:NM_001282976:exon7:c.A574G:p.R192G,Naca:NM_013608:exon7:c.A574G:p.R192G,Naca:NM_001113199:exon8:c.A6490G:p.R2164G"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128209424	12A2p6	cell line	sgMsh2	128209424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	41	0	0	NA	exonic	Gls2	nonsynonymous SNV	"Gls2:NM_001285777:exon17:c.A1222G:p.N408D,Gls2:NM_001033264:exon18:c.A1789G:p.N597D,Gls2:NM_001285779:exon18:c.A994G:p.N332D"	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	9.78E-09	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128211121	12A2p6	cell line	sgMsh2	128211121	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	176	0	0	NA	exonic	Spryd4	nonsynonymous SNV	Spryd4:NM_025716:exon2:c.A356C:p.D119A	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999931	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128225892	12A2p6	cell line	sgMsh2	128225892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	100	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T11A:p.L4H	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128225954	12A2p6	cell line	sgMsh2	128225954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	exonic	Mip	nonsynonymous SNV	Mip:NM_008600:exon1:c.T73C:p.F25L	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990037	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128277668	12A2p6	cell line	sgMsh2	128277668	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	86	0	0	NA	exonic	Stat2	nonsynonymous SNV	Stat2:NM_019963:exon5:c.G403T:p.A135S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.841068017	1	0.9333076	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	128389817	12A2p6	cell line	sgMsh2	128389817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	181	0	0	NA	exonic	Ankrd52	synonymous SNV	Ankrd52:NM_172790:exon26:c.T2853C:p.L951L	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999948	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr10	128571459	12A2p6	cell line	sgMsh2	128571459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	168	0	0	NA	exonic	Erbb3	nonsynonymous SNV	Erbb3:NM_010153:exon24:c.A2918G:p.Y973C	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.841068017	1	0.9610082	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129046673	12A2p6	cell line	sgMsh2	129046673	T	C	SNV	Mutect2;MuSe;Vardict	3	0.062	333	0	0	NA	exonic	Olfr765	nonsynonymous SNV	Olfr765:NM_001085477:exon1:c.A389G:p.Y130C	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.289701206	3	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129160683	12A2p6	cell line	sgMsh2	129160683	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	163	0	0	NA	exonic	Olfr771	frameshift deletion	Olfr771:NM_146547:exon1:c.300delT:p.F100Lfs*6	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr10	129238369	12A2p6	cell line	sgMsh2	129238369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	269	0	0	NA	exonic	Olfr774	synonymous SNV	Olfr774:NM_207620:exon1:c.T219C:p.S73S	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	3.89E-08	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr10	129462699	12A2p6	cell line	sgMsh2	129462699	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	273	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.A22G:p.T8A	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	2	1	1	3.13E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129463208	12A2p6	cell line	sgMsh2	129463208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	410	0	0	NA	exonic	Olfr787	stopgain	Olfr787:NM_001011822:exon1:c.T531A:p.C177X	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129463212	12A2p6	cell line	sgMsh2	129463212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	404	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.T535C:p.Y179H	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	1.21E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129648033	12A2p6	cell line	sgMsh2	129648033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	87	0	0	NA	exonic	Olfr799	nonsynonymous SNV	Olfr799:NM_146927:exon1:c.A904G:p.I302V	10qD3	chr10-3120209-129648033	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990037	AAT	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr10	129776712	12A2p6	cell line	sgMsh2	129776712	T	C	SNV	Mutect2;Vardict	2	0.057	192	0	0	NA	exonic	Olfr809	nonsynonymous SNV	Olfr809:NM_146324:exon1:c.T842C:p.V281A	10qD3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129791191	12A2p6	cell line	sgMsh2	129791191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	275	0	0	NA	exonic	Olfr810	nonsynonymous SNV	Olfr810:NM_146550:exon1:c.A397G:p.I133V	10qD3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr10	129801679	12A2p6	cell line	sgMsh2	129801679	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	409	0	0	NA	exonic	Olfr811	frameshift deletion	Olfr811:NM_146552:exon1:c.845delT:p.L282Cfs*1	10qD3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr10	129842231	12A2p6	cell line	sgMsh2	129842231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	391	0	0	NA	exonic	Olfr812	synonymous SNV	Olfr812:NM_146795:exon1:c.A810G:p.K270K	10qD3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	synonymous	TTTA	8	TTTATTTA	NA
M7_p20	chr11	3156811	12A2p6	cell line	sgMsh2	3156811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	51	0	0	NA	exonic	Sfi1	synonymous SNV	Sfi1:NM_030207:exon12:c.A1137G:p.Q379Q	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9925877	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr11	3333214	12A2p6	cell line	sgMsh2	3333214	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Pik3ip1	nonsynonymous SNV	Pik3ip1:NM_178149:exon4:c.A313G:p.T105A	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	3419953	12A2p6	cell line	sgMsh2	3419953	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	102	0	0	NA	exonic	Rnf185	synonymous SNV	"Rnf185:NM_001290473:exon5:c.T249C:p.D83D,Rnf185:NM_001290472:exon6:c.T390C:p.D130D,Rnf185:NM_145355:exon7:c.T498C:p.D166D"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9995691	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr11	3675857	12A2p6	cell line	sgMsh2	3675857	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	247	0	0	NA	exonic	Morc2a	synonymous SNV	"Morc2a:NM_001363202:exon7:c.T456G:p.A152A,Morc2a:NM_198162:exon7:c.T270G:p.A90A,Morc2a:NM_001159288:exon8:c.T456G:p.A152A"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr11	3897432	12A2p6	cell line	sgMsh2	3897432	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	242	0	0	NA	exonic	Dusp18	nonsynonymous SNV	Dusp18:NM_173745:exon2:c.A421G:p.I141V	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	4075508	12A2p6	cell line	sgMsh2	4075508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	89	0	0	NA	exonic	Sec14l3	nonsynonymous SNV	Sec14l3:NM_001029937:exon11:c.A1031G:p.N344S	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.999109	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	4167705	12A2p6	cell line	sgMsh2	4167705	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	66	0	0	NA	exonic	Sf3a1	frameshift deletion	Sf3a1:NM_026175:exon4:c.466delC:p.S158Pfs*8	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7_p20	chr11	5070073	12A2p6	cell line	sgMsh2	5070073	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	50	0	0	NA	exonic	Ewsr1	synonymous SNV	"Ewsr1:NM_001283062:exon15:c.G1848T:p.R616R,Ewsr1:NM_001362617:exon15:c.G1608T:p.R536R,Ewsr1:NM_001362616:exon16:c.G1866T:p.R622R,Ewsr1:NM_001362620:exon16:c.G945T:p.R315R,Ewsr1:NM_001283061:exon17:c.G1962T:p.R654R,Ewsr1:NM_007968:exon17:c.G1959T:p.R653R,Ewsr1:NM_001362612:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362613:exon18:c.G1980T:p.R660R,Ewsr1:NM_001362614:exon18:c.G1977T:p.R659R,Ewsr1:NM_001362615:exon18:c.G1974T:p.R658R"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr11	5103222	12A2p6	cell line	sgMsh2	5103222	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	63	0	0	NA	exonic	Rhbdd3	synonymous SNV	"Rhbdd3:NM_001290493:exon4:c.T21A:p.P7P,Rhbdd3:NM_001290491:exon5:c.T21A:p.P7P,Rhbdd3:NM_001290492:exon5:c.T21A:p.P7P,Rhbdd3:NM_177370:exon5:c.T21A:p.P7P"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9961974	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	5286136	12A2p6	cell line	sgMsh2	5286136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	71	0	0	NA	exonic	Znrf3	synonymous SNV	"Znrf3:NM_001080924:exon6:c.A861G:p.T287T,Znrf3:NM_001290501:exon7:c.A573G:p.T191T"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9975657	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr11	6418301	12A2p6	cell line	sgMsh2	6418301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	55	0	0	NA	exonic	Ppia	nonsynonymous SNV	Ppia:NM_008907:exon3:c.G176A:p.G59E	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9940646	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	6601506	12A2p6	cell line	sgMsh2	6601506	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.213	69	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1684G:p.T562A	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9969906	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	7130396	12A2p6	cell line	sgMsh2	7130396	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	152	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon5:c.A1138G:p.T380A	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	7198264	12A2p6	cell line	sgMsh2	7198264	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	52	0	0	NA	exonic	Igfbp1	synonymous SNV	Igfbp1:NM_008341:exon1:c.T306G:p.G102G	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.992988	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr11	9267519	12A2p6	cell line	sgMsh2	9267519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	152	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon9:c.T960C:p.D320D	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr11	9588391	12A2p6	cell line	sgMsh2	9588391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	195	0	0	NA	exonic	Abca13	nonsynonymous SNV	Abca13:NM_178259:exon55:c.T14173G:p.F4725V	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999475	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	11801717	12A2p6	cell line	sgMsh2	11801717	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	97	0	0	NA	exonic	Fignl1	nonsynonymous SNV	"Fignl1:NM_001163360:exon2:c.T1337C:p.I446T,Fignl1:NM_001163359:exon3:c.T1337C:p.I446T,Fignl1:NM_021891:exon3:c.T1337C:p.I446T"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	12253400	12A2p6	cell line	sgMsh2	12253400	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	88	0	0	NA	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.C3226T:p.L1076F,Cobl:NM_001282994:exon12:c.C3280T:p.L1094F,Cobl:NM_172496:exon12:c.C3301T:p.L1101F"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9984335	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	12254551	12A2p6	cell line	sgMsh2	12254551	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	319	0	0	NA	exonic	Cobl	nonsynonymous SNV	"Cobl:NM_001282993:exon11:c.A2075C:p.D692A,Cobl:NM_001282994:exon12:c.A2129C:p.D710A,Cobl:NM_172496:exon12:c.A2150C:p.D717A"	11qA1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.186904004	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	16263013	12A2p6	cell line	sgMsh2	16263013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	97	0	0	NA	exonic	Vstm2a	nonsynonymous SNV	"Vstm2a:NM_001290539:exon4:c.A397G:p.N133D,Vstm2a:NM_001363461:exon4:c.A397G:p.N133D,Vstm2a:NM_145967:exon4:c.A397G:p.N133D"	11qA2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	16263042	12A2p6	cell line	sgMsh2	16263042	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	104	0	0	NA	exonic	Vstm2a	synonymous SNV	"Vstm2a:NM_001290539:exon4:c.C426A:p.A142A,Vstm2a:NM_001363461:exon4:c.C426A:p.A142A,Vstm2a:NM_145967:exon4:c.C426A:p.A142A"	11qA2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996147	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr11	20094390	12A2p6	cell line	sgMsh2	20094390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	116	0	0	NA	exonic	Actr2	nonsynonymous SNV	"Actr2:NM_146243:exon3:c.A215G:p.Y72C,Actr2:NM_001362899:exon4:c.A230G:p.Y77C"	11qA3.1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.999674	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	23868035	12A2p6	cell line	sgMsh2	23868035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	exonic	Papolg	nonsynonymous SNV	Papolg:NM_172555:exon17:c.A1610G:p.D537G	11qA3.2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	23870296	12A2p6	cell line	sgMsh2	23870296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	192	0	0	NA	exonic	Papolg	synonymous SNV	Papolg:NM_172555:exon15:c.T1293C:p.N431N	11qA3.2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr11	26471506	12A2p6	cell line	sgMsh2	26471506	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.081	135	0	0	NA	exonic	Vrk2	nonsynonymous SNV	"Vrk2:NM_001252447:exon12:c.A1304G:p.Y435C,Vrk2:NM_027260:exon13:c.A1451G:p.Y484C"	11qA3.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.378480608	3	0.9705888	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	30143115	12A2p6	cell line	sgMsh2	30143115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	116	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon10:c.A1206G:p.I402M,Sptbn1:NM_175836:exon10:c.A1245G:p.I415M"	11qA3.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	30149994	12A2p6	cell line	sgMsh2	30149994	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	268	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon5:c.A544T:p.I182F,Sptbn1:NM_175836:exon5:c.A583T:p.I195F"	11qA3.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	4.11E-08	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	31671559	12A2p6	cell line	sgMsh2	31671559	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	25	0	0	NA	exonic	Bod1	nonsynonymous SNV	Bod1:NM_001024919:exon1:c.A143C:p.K48T	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9690252	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	32598830	12A2p6	cell line	sgMsh2	32598830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	87	0	0	NA	exonic	Stk10	nonsynonymous SNV	"Stk10:NM_001359177:exon9:c.A803G:p.N268S,Stk10:NM_001359178:exon9:c.A710G:p.N237S,Stk10:NM_009288:exon9:c.A1397G:p.N466S"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9905453	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	33567416	12A2p6	cell line	sgMsh2	33567416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	44	0	0	NA	exonic	Gabrp	synonymous SNV	Gabrp:NM_146017:exon5:c.T255C:p.T85T	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9890748	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr11	34071108	12A2p6	cell line	sgMsh2	34071108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon7:c.G463A:p.A155T	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9912588	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	34232876	12A2p6	cell line	sgMsh2	34232876	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	58	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon47:c.C4756A:p.H1586N	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	34402347	12A2p6	cell line	sgMsh2	34402347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	123	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.A388G:p.S130G	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	34402779	12A2p6	cell line	sgMsh2	34402779	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	154	0	0	NA	exonic	Insyn2b	nonsynonymous SNV	Insyn2b:NM_001025382:exon2:c.C820A:p.L274I	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999765	ACT	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr11	34688511	12A2p6	cell line	sgMsh2	34688511	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	229	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2074G:p.F692V	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	35234893	12A2p6	cell line	sgMsh2	35234893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	250	0	0	NA	exonic	Slit3	nonsynonymous SNV	Slit3:NM_011412:exon4:c.C398T:p.P133L	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	35808486	12A2p6	cell line	sgMsh2	35808486	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	215	0	0	NA	exonic	Rars	nonsynonymous SNV	Rars:NM_025936:exon15:c.T1979A:p.M660K	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9999403	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	35869173	12A2p6	cell line	sgMsh2	35869173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	83	0	0	NA	exonic	Wwc1	nonsynonymous SNV	Wwc1:NM_170779:exon14:c.A2014G:p.K672E	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	175	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999927	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr11	40710205	12A2p6	cell line	sgMsh2	40710205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	443	0	0	NA	exonic	Hmmr	nonsynonymous SNV	Hmmr:NM_013552:exon12:c.A1337G:p.N446S	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	40728505	12A2p6	cell line	sgMsh2	40728505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	exonic	Hmmr	synonymous SNV	Hmmr:NM_013552:exon3:c.G147A:p.E49E	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr11	42162557	12A2p6	cell line	sgMsh2	42162557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	383	0	0	NA	exonic	Gabra1	synonymous SNV	"Gabra1:NM_001359035:exon4:c.T249C:p.D83D,Gabra1:NM_010250:exon4:c.T249C:p.D83D"	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	1.06E-09	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr11	42529453	12A2p6	cell line	sgMsh2	42529453	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	265	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362647:exon5:c.A500G:p.Y167C,Gabrb2:NM_001362649:exon5:c.A404G:p.Y135C,Gabrb2:NM_001362646:exon6:c.A500G:p.Y167C,Gabrb2:NM_008070:exon6:c.A500G:p.Y167C"	11qA5	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	4.84E-08	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	44869152	12A2p6	cell line	sgMsh2	44869152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	123	0	0	NA	exonic	Ebf1	synonymous SNV	"Ebf1:NM_001290709:exon7:c.A615G:p.P205P,Ebf1:NM_001290710:exon7:c.A615G:p.P205P,Ebf1:NM_001290711:exon7:c.A216G:p.P72P,Ebf1:NM_001362569:exon7:c.A519G:p.P173P,Ebf1:NM_001362571:exon7:c.A615G:p.P205P,Ebf1:NM_001362574:exon7:c.A615G:p.P205P,Ebf1:NM_001362576:exon7:c.A216G:p.P72P,Ebf1:NM_001362578:exon7:c.A216G:p.P72P,Ebf1:NM_007897:exon7:c.A615G:p.P205P,Ebf1:NM_001362575:exon8:c.A564G:p.P188P,Ebf1:NM_001362577:exon8:c.A216G:p.P72P,Ebf1:NM_001362579:exon8:c.A216G:p.P72P"	11qB1.1	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	48889131	12A2p6	cell line	sgMsh2	48889131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	766	0	0	NA	exonic	Gm5431	synonymous SNV	Gm5431:NM_001024230:exon5:c.A963G:p.Q321Q	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	1	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr11	48987591	12A2p6	cell line	sgMsh2	48987591	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	268	0	0	NA	exonic	Tgtp1	nonsynonymous SNV	Tgtp1:NM_011579:exon2:c.A286T:p.M96L	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	49328236	12A2p6	cell line	sgMsh2	49328236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	238	0	0	NA	exonic	Olfr1391	frameshift deletion	Olfr1391:NM_146468:exon1:c.824delT:p.Y277Ifs*2	11qB1.2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr11	49960554	12A2p6	cell line	sgMsh2	49960554	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	33	0	0	NA	exonic	Rasgef1c	nonsynonymous SNV	"Rasgef1c:NM_001347462:exon5:c.A604T:p.S202C,Rasgef1c:NM_029004:exon5:c.A595T:p.S199C"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9799748	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	50379470	12A2p6	cell line	sgMsh2	50379470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	111	0	0	NA	exonic	Hnrnph1	nonsynonymous SNV	"Hnrnph1:NM_001362526:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362529:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362530:exon2:c.T100C:p.C34R,Hnrnph1:NM_001362533:exon2:c.T100C:p.C34R,Hnrnph1:NM_001347487:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362522:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362524:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362525:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362527:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362528:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362532:exon3:c.T100C:p.C34R,Hnrnph1:NM_021510:exon3:c.T100C:p.C34R,Hnrnph1:NM_001362523:exon4:c.T100C:p.C34R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9982224	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	50785555	12A2p6	cell line	sgMsh2	50785555	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	164	0	0	NA	exonic	Adamts2	nonsynonymous SNV	Adamts2:NM_175643:exon14:c.G2096A:p.G699E	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999866	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	51048724	12A2p6	cell line	sgMsh2	51048724	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	253	0	0	NA	exonic	Olfr1375	nonsynonymous SNV	Olfr1375:NM_146516:exon1:c.T616G:p.L206V	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	51586645	12A2p6	cell line	sgMsh2	51586645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	89	0	0	NA	exonic	Phykpl	nonsynonymous SNV	"Phykpl:NM_001382821:exon3:c.A263G:p.N88S,Phykpl:NM_028398:exon3:c.A263G:p.N88S"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9986891	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	51831404	12A2p6	cell line	sgMsh2	51831404	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	32	0	0	NA	exonic	Jade2	synonymous SNV	"Jade2:NM_199299:exon5:c.A321T:p.P107P,Jade2:NM_001357588:exon6:c.A537T:p.P179P"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9710032	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	52119225	12A2p6	cell line	sgMsh2	52119225	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	91	0	0	NA	exonic	Ppp2ca	nonsynonymous SNV	Ppp2ca:NM_019411:exon5:c.T659G:p.F220C	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.9984633	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	53375629	12A2p6	cell line	sgMsh2	53375629	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	60	0	0	NA	exonic	Aff4	nonsynonymous SNV	"Aff4:NM_001363331:exon4:c.T944G:p.L315R,Aff4:NM_033565:exon4:c.T944G:p.L315R"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9955059	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	53478591	12A2p6	cell line	sgMsh2	53478591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.182	29	0	0	NA	exonic	Sowaha	synonymous SNV	Sowaha:NM_183173:exon1:c.C1317T:p.D439D	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.850413217	1	9.82E-06	GGT	synonymous	NA	NA	NA	NA
M7_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	54	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9937253	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	53684264	12A2p6	cell line	sgMsh2	53684264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	49	0	0	NA	exonic	Rad50	nonsynonymous SNV	Rad50:NM_009012:exon12:c.A1831G:p.I611V	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9917177	ATA	nonsynonymous	TTAT	8	TTATTTAT	NA
M7_p20	chr11	54325615	12A2p6	cell line	sgMsh2	54325615	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	231	0	0	NA	exonic	Acsl6	nonsynonymous SNV	"Acsl6:NM_001033597:exon6:c.T607C:p.Y203H,Acsl6:NM_001033598:exon6:c.T532C:p.Y178H,Acsl6:NM_001033599:exon6:c.T532C:p.Y178H,Acsl6:NM_144823:exon6:c.T607C:p.Y203H"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	54480293	12A2p6	cell line	sgMsh2	54480293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	66	0	0	NA	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon4:c.T398C:p.M133T	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9663233	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	54482531	12A2p6	cell line	sgMsh2	54482531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	147	0	0	NA	exonic	Fnip1	synonymous SNV	Fnip1:NM_173753:exon6:c.T567C:p.S189S	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999652	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	54493324	12A2p6	cell line	sgMsh2	54493324	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	120	0	0	NA	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon10:c.A1046G:p.N349S	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998425	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	54568451	12A2p6	cell line	sgMsh2	54568451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	173	0	0	NA	exonic	Rapgef6	synonymous SNV	"Rapgef6:NM_001252494:exon6:c.A450G:p.E150E,Rapgef6:NM_001252496:exon6:c.A450G:p.E150E,Rapgef6:NM_175258:exon6:c.A450G:p.E150E"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.761633815	2	0.7309676	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	54690210	12A2p6	cell line	sgMsh2	54690210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	129	0	0	NA	exonic	Rapgef6	nonsynonymous SNV	"Rapgef6:NM_175258:exon25:c.A3779C:p.N1260T,Rapgef6:NM_001252494:exon26:c.A3794C:p.N1265T,Rapgef6:NM_001252496:exon27:c.A3818C:p.N1273T"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	198	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.999998	AAC	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr11	54917807	12A2p6	cell line	sgMsh2	54917807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	60	0	0	NA	exonic	Tnip1	nonsynonymous SNV	"Tnip1:NM_001199276:exon13:c.A1394G:p.N465S,Tnip1:NM_001271455:exon14:c.A1394G:p.N465S,Tnip1:NM_021327:exon14:c.A1553G:p.N518S,Tnip1:NM_001199275:exon15:c.A1553G:p.N518S,Tnip1:NM_001271456:exon15:c.A1553G:p.N518S"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9955059	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	55497734	12A2p6	cell line	sgMsh2	55497734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	98	0	0	NA	exonic	G3bp1	synonymous SNV	G3bp1:NM_013716:exon9:c.T921C:p.N307N	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr11	56040841	12A2p6	cell line	sgMsh2	56040841	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	102	0	0	NA	exonic	Nmur2	nonsynonymous SNV	Nmur2:NM_153079:exon1:c.A43G:p.M15V	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9995691	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	57201163	12A2p6	cell line	sgMsh2	57201163	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	158	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon5:c.A683T:p.Y228F,Gria1:NM_001252403:exon5:c.A476T:p.Y159F,Gria1:NM_008165:exon5:c.A683T:p.Y228F"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.616783212	2	0.9995883	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	58625368	12A2p6	cell line	sgMsh2	58625368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	209	0	0	NA	exonic	Olfr323	nonsynonymous SNV	Olfr323:NM_146376:exon1:c.T677C:p.L226P	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999989	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	58625784	12A2p6	cell line	sgMsh2	58625784	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.166	79	0	0	NA	exonic	Olfr323	synonymous SNV	Olfr323:NM_146376:exon1:c.C261A:p.S87S	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.730334	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr11	58733096	12A2p6	cell line	sgMsh2	58733096	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	206	0	0	NA	exonic	Olfr317	nonsynonymous SNV	Olfr317:NM_001011769:exon1:c.T68C:p.L23P	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	58733122	12A2p6	cell line	sgMsh2	58733122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	199	0	0	NA	exonic	Olfr317	synonymous SNV	Olfr317:NM_001011769:exon1:c.T42C:p.L14L	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999981	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr11	59000260	12A2p6	cell line	sgMsh2	59000260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	37	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_001171512:exon93:c.T21445C:p.S7149P	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9779803	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	59007828	12A2p6	cell line	sgMsh2	59007828	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.222	177	0	0	NA	exonic	Obscn	synonymous SNV	Obscn:NM_001171512:exon84:c.T19704C:p.I6568I	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999935	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr11	59463124	12A2p6	cell line	sgMsh2	59463124	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	149	0	0	NA	exonic	Zfp867	nonsynonymous SNV	Zfp867:NM_178417:exon4:c.T1378C:p.Y460H	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999689	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	59761185	12A2p6	cell line	sgMsh2	59761185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	60	0	0	NA	exonic	Mprip	nonsynonymous SNV	Mprip:NM_001368931:exon16:c.A6176C:p.E2059A	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9955059	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	59792727	12A2p6	cell line	sgMsh2	59792727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	93	0	0	NA	exonic	Flcn	synonymous SNV	"Flcn:NM_001271356:exon13:c.A1623G:p.A541A,Flcn:NM_001271357:exon13:c.A1623G:p.A541A,Flcn:NM_146018:exon13:c.A1623G:p.A541A"	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr11	59960641	12A2p6	cell line	sgMsh2	59960641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	21	0	0	NA	exonic	Med9	nonsynonymous SNV	Med9:NM_138675:exon2:c.A295G:p.T99A	11qB1.3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9615551	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	60201272	12A2p6	cell line	sgMsh2	60201272	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.16	40	0	0	NA	exonic	Srebf1	nonsynonymous SNV	"Srebf1:NM_001313979:exon16:c.A2821G:p.T941A,Srebf1:NM_001358314:exon16:c.A2764G:p.T922A,Srebf1:NM_001358315:exon16:c.A2743G:p.T915A,Srebf1:NM_011480:exon16:c.A2836G:p.T946A"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.747616015	1	0.7627949	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	60393818	12A2p6	cell line	sgMsh2	60393818	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	171	0	0	NA	exonic	Drc3	nonsynonymous SNV	Drc3:NM_029044:exon13:c.T1448C:p.L483P	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999756	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	60438534	12A2p6	cell line	sgMsh2	60438534	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	57	0	0	NA	exonic	Gid4	nonsynonymous SNV	Gid4:NM_025757:exon5:c.C551A:p.A184D	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.855085817	1	0.9361314	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	61266903	12A2p6	cell line	sgMsh2	61266903	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.25	16	0	0	NA	exonic	Aldh3a2	nonsynonymous SNV	"Aldh3a2:NM_001331114:exon1:c.A104T:p.Q35L,Aldh3a2:NM_007437:exon1:c.A104T:p.Q35L"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9497451	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	61491124	12A2p6	cell line	sgMsh2	61491124	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	63	0	0	NA	exonic	Mapk7	nonsynonymous SNV	"Mapk7:NM_001291034:exon3:c.C961A:p.L321I,Mapk7:NM_001291035:exon3:c.C544A:p.L182I,Mapk7:NM_001291037:exon3:c.C751A:p.L251I,Mapk7:NM_001291033:exon4:c.C754A:p.L252I,Mapk7:NM_001291036:exon4:c.C544A:p.L182I,Mapk7:NM_001361989:exon4:c.C544A:p.L182I,Mapk7:NM_011841:exon4:c.C961A:p.L321I"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9961974	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	109	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	61671685	12A2p6	cell line	sgMsh2	61671685	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	35	0	0	NA	exonic	Grap	nonsynonymous SNV	Grap:NM_027817:exon5:c.T481A:p.C161S	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9820559	TTG	nonsynonymous	GCTT	8	GCTTGCTT	NA
M7_p20	chr11	62029334	12A2p6	cell line	sgMsh2	62029334	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	91	0	0	NA	exonic	Specc1	nonsynonymous SNV	"Specc1:NM_001281818:exon2:c.A59C:p.D20A,Specc1:NM_001310526:exon2:c.A59C:p.D20A"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	62211664	12A2p6	cell line	sgMsh2	62211664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	181	0	0	NA	exonic	Specc1	synonymous SNV	"Specc1:NM_001029936:exon12:c.A2808G:p.A936A,Specc1:NM_001281818:exon14:c.A3048G:p.A1016A"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9999886	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr11	62325584	12A2p6	cell line	sgMsh2	62325584	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	197	0	0	NA	exonic	Ncor1	synonymous SNV	"Ncor1:NM_001252313:exon41:c.C6627T:p.F2209F,Ncor1:NM_011308:exon41:c.C6426T:p.F2142F"	11qB2	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9965851	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr11	65855384	12A2p6	cell line	sgMsh2	65855384	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.157	27	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon63:c.A11902G:p.T3968A	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.733598215	1	0.7916667	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	67211527	12A2p6	cell line	sgMsh2	67211527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	83	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.A2643C:p.E881D	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9987542	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	67245792	12A2p6	cell line	sgMsh2	67245792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	144	0	0	NA	exonic	Myh4	synonymous SNV	Myh4:NM_010855:exon14:c.T1395C:p.I465I	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	67248692	12A2p6	cell line	sgMsh2	67248692	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	47	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon16:c.T1834C:p.Y612H	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9907467	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	67681255	12A2p6	cell line	sgMsh2	67681255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	223	0	0	NA	exonic	Gas7	nonsynonymous SNV	"Gas7:NM_001277080:exon11:c.A800G:p.Y267C,Gas7:NM_001109657:exon12:c.A989G:p.Y330C,Gas7:NM_001277079:exon12:c.A977G:p.Y326C,Gas7:NM_008088:exon12:c.A1004G:p.Y335C"	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	0.794342016	1	0.5915308	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	67695718	12A2p6	cell line	sgMsh2	67695718	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	116	0	0	NA	exonic	Rcvrn	nonsynonymous SNV	Rcvrn:NM_009038:exon1:c.A302G:p.K101R	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	67742292	12A2p6	cell line	sgMsh2	67742292	C	T	SNV	Mutect2;Vardict	2	0.219	86	0	0	NA	exonic	Glp2r	synonymous SNV	Glp2r:NM_175681:exon7:c.G714A:p.L238L	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	18	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9548392	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	69127508	12A2p6	cell line	sgMsh2	69127508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	84	0	0	NA	exonic	Aloxe3	synonymous SNV	Aloxe3:NM_011786:exon2:c.T330C:p.T110T	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	CTG	synonymous	TACTG	11	TACTGTACTGT	NA
M7_p20	chr11	69197667	12A2p6	cell line	sgMsh2	69197667	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	43	0	0	NA	exonic	Alox8	nonsynonymous SNV	Alox8:NM_009661:exon1:c.G143A:p.G48D	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	1	0.9884537	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	69320881	12A2p6	cell line	sgMsh2	69320881	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.435	27	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon4:c.516delC:p.T173Pfs*8	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7_p20	chr11	69404925	12A2p6	cell line	sgMsh2	69404925	A	G	SNV	Mutect2;Vardict	2	0.231	20	0	0	NA	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon12:c.T2515C:p.Y839H	11qB3	chr11-3133205-69579350	4	2	2	0.9	4.205340083	NA	1	1	1	0.9594315	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	69668102	12A2p6	cell line	sgMsh2	69668102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	206	0	0	NA	exonic	Eif4a1	nonsynonymous SNV	"Eif4a1:NM_001159375:exon9:c.A916G:p.M306V,Eif4a1:NM_144958:exon9:c.A916G:p.M306V"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999987	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	69817073	12A2p6	cell line	sgMsh2	69817073	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	65	0	0	NA	exonic	Spem2	nonsynonymous SNV	Spem2:NM_175368:exon3:c.T1065G:p.S355R	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9965984	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	69827851	12A2p6	cell line	sgMsh2	69827851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	82	0	0	NA	exonic	Nlgn2	nonsynonymous SNV	"Nlgn2:NM_198862:exon5:c.A902C:p.N301T,Nlgn2:NM_001364137:exon6:c.A902C:p.N301T"	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9986826	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	70228498	12A2p6	cell line	sgMsh2	70228498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	74	0	0	NA	exonic	Bcl6b	nonsynonymous SNV	Bcl6b:NM_007528:exon3:c.A391G:p.I131V	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.892466618	1	0.9765461	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	70460791	12A2p6	cell line	sgMsh2	70460791	T	A	SNV	Mutect2;Strelka2	2	0.374	8	0	0	NA	exonic	Zmynd15	synonymous SNV	Zmynd15:NM_001029929:exon2:c.T222A:p.G74G	11qB3	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9226809	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	70934579	12A2p6	cell line	sgMsh2	70934579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	91	0	0	NA	exonic	Rabep1	nonsynonymous SNV	"Rabep1:NM_001291141:exon13:c.T2071C:p.C691R,Rabep1:NM_001291142:exon13:c.T2080C:p.C694R,Rabep1:NM_019400:exon14:c.T2200C:p.C734R,Rabep1:NM_001291143:exon15:c.T1948C:p.C650R"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9992032	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	71771899	12A2p6	cell line	sgMsh2	71771899	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	291	0	0	NA	exonic	Wscd1	synonymous SNV	"Wscd1:NM_001357960:exon5:c.C765T:p.V255V,Wscd1:NM_001357965:exon5:c.C765T:p.V255V,Wscd1:NM_177618:exon5:c.C765T:p.V255V"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	1.21E-08	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	133	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999239	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	72176682	12A2p6	cell line	sgMsh2	72176682	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.253	103	0	0	NA	exonic	4933427D14Rik	nonsynonymous SNV	"4933427D14Rik:NM_001361564:exon10:c.A1781G:p.D594G,4933427D14Rik:NM_028963:exon10:c.A1781G:p.D594G"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9995926	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	72304809	12A2p6	cell line	sgMsh2	72304809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	52	0	0	NA	exonic	Xaf1	synonymous SNV	Xaf1:NM_001037713:exon3:c.A312G:p.V104V	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.981246019	1	0.9905505	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	72317574	12A2p6	cell line	sgMsh2	72317574	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.231	141	0	0	NA	exonic	Fbxo39	nonsynonymous SNV	Fbxo39:NM_001099688:exon2:c.A751G:p.T251A	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999513	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	72980679	12A2p6	cell line	sgMsh2	72980679	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	130	0	0	NA	exonic	Atp2a3	nonsynonymous SNV	"Atp2a3:NM_001163336:exon14:c.G2005T:p.A669S,Atp2a3:NM_001163337:exon14:c.G2005T:p.A669S,Atp2a3:NM_016745:exon14:c.G2005T:p.A669S"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.99991	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	73075717	12A2p6	cell line	sgMsh2	73075717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	155	0	0	NA	exonic	Ncbp3	synonymous SNV	Ncbp3:NM_025818:exon11:c.T1398C:p.D466D	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999778	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr11	73131723	12A2p6	cell line	sgMsh2	73131723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	287	0	0	NA	exonic	Itgae	synonymous SNV	"Itgae:NM_001361245:exon23:c.T2760C:p.S920S,Itgae:NM_008399:exon23:c.T2763C:p.S921S"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	1.48E-08	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	73283700	12A2p6	cell line	sgMsh2	73283700	A	G	SNV	Mutect2;Vardict	2	0.06	71	0	0	NA	exonic	Trpv3	nonsynonymous SNV	"Trpv3:NM_001371006:exon8:c.A892G:p.N298D,Trpv3:NM_145099:exon8:c.A892G:p.N298D"	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.280356006	3	0.996266	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	73395580	12A2p6	cell line	sgMsh2	73395580	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	365	0	0	NA	exonic	Olfr1	synonymous SNV	Olfr1:NM_146921:exon3:c.G441A:p.L147L	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	1.18E-09	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr11	73589528	12A2p6	cell line	sgMsh2	73589528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	540	0	0	NA	exonic	Olfr385	nonsynonymous SNV	Olfr385:NM_147023:exon1:c.A209G:p.D70G	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	73814500	12A2p6	cell line	sgMsh2	73814500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	196	0	0	NA	exonic	Olfr392	nonsynonymous SNV	Olfr392:NM_147006:exon2:c.T581C:p.V194A	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999978	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	73906934	12A2p6	cell line	sgMsh2	73906934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	259	0	0	NA	exonic	Olfr395	nonsynonymous SNV	Olfr395:NM_147005:exon1:c.A557G:p.K186R	11qB4	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.925174818	1	0.9999739	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	74122125	12A2p6	cell line	sgMsh2	74122125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	355	0	0	NA	exonic	Olfr401	nonsynonymous SNV	Olfr401:NM_146706:exon1:c.A835G:p.I279V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	1.31E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	74289339	12A2p6	cell line	sgMsh2	74289339	C	T	SNV	Mutect2;Vardict	2	0.055	202	0	0	NA	exonic	Olfr59	nonsynonymous SNV	"Olfr59:NM_001362665:exon2:c.C692T:p.A231V,Olfr59:NM_011002:exon2:c.C692T:p.A231V"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.256993005	3	1.42E-09	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	74784202	12A2p6	cell line	sgMsh2	74784202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	161	0	0	NA	exonic	Mettl16	synonymous SNV	Mettl16:NM_026197:exon3:c.T273C:p.D91D	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999841	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr11	75167319	12A2p6	cell line	sgMsh2	75167319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	20	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.T263C:p.M88T,Hic1:NM_010430:exon2:c.T743C:p.M248T"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9594315	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	75410975	12A2p6	cell line	sgMsh2	75410975	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	104	0	0	NA	exonic	Serpinf1	nonsynonymous SNV	Serpinf1:NM_011340:exon7:c.T853G:p.L285V	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.976573419	1	0.9991835	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	75432703	12A2p6	cell line	sgMsh2	75432703	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	75	0	0	NA	exonic	Serpinf2	synonymous SNV	Serpinf2:NM_008878:exon10:c.G1176A:p.E392E	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.607438012	2	0.9448417	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr11	75502536	12A2p6	cell line	sgMsh2	75502536	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	162	0	0	NA	exonic	Prpf8	nonsynonymous SNV	Prpf8:NM_138659:exon31:c.T4985G:p.I1662S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.999985	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	75503400	12A2p6	cell line	sgMsh2	75503400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	320	0	0	NA	exonic	Prpf8	synonymous SNV	Prpf8:NM_138659:exon32:c.T5268C:p.S1756S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.981246019	1	1.49E-08	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr11	76424923	12A2p6	cell line	sgMsh2	76424923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	73	0	0	NA	exonic	Abr	nonsynonymous SNV	"Abr:NM_001363379:exon3:c.T323C:p.V108A,Abr:NM_001291186:exon13:c.T1298C:p.V433A,Abr:NM_001346670:exon17:c.T1841C:p.V614A,Abr:NM_198018:exon17:c.T1988C:p.V663A,Abr:NM_198894:exon18:c.T1814C:p.V605A,Abr:NM_198895:exon18:c.T1952C:p.V651A"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9978227	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	77455152	12A2p6	cell line	sgMsh2	77455152	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	110	0	0	NA	exonic	Ssh2	nonsynonymous SNV	"Ssh2:NM_001291190:exon14:c.A3962T:p.Q1321L,Ssh2:NM_177710:exon15:c.A3944T:p.Q1315L"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997245	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	77692417	12A2p6	cell line	sgMsh2	77692417	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	206	0	0	NA	exonic	Nufip2	nonsynonymous SNV	Nufip2:NM_001024205:exon2:c.A1156C:p.T386P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999987	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78154594	12A2p6	cell line	sgMsh2	78154594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	46	0	0	NA	exonic	Fam222b	nonsynonymous SNV	"Fam222b:NM_001346762:exon3:c.T596C:p.M199T,Fam222b:NM_001364110:exon3:c.T980C:p.M327T,Fam222b:NM_145430:exon3:c.T980C:p.M327T"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.803687216	1	0.8620201	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78171162	12A2p6	cell line	sgMsh2	78171162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	33	0	0	NA	exonic	Nek8	nonsynonymous SNV	Nek8:NM_080849:exon5:c.T755C:p.I252T	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9799748	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78366894	12A2p6	cell line	sgMsh2	78366894	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	112	0	0	NA	exonic	Foxn1	nonsynonymous SNV	"Foxn1:NM_001277290:exon5:c.T800G:p.L267R,Foxn1:NM_008238:exon5:c.T803G:p.L268R"	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997537	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78515125	12A2p6	cell line	sgMsh2	78515125	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	185	0	0	NA	exonic	Poldip2	nonsynonymous SNV	Poldip2:NM_026389:exon3:c.T281A:p.V94D	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999958	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78589348	12A2p6	cell line	sgMsh2	78589348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	130	0	0	NA	exonic	Nlk	nonsynonymous SNV	Nlk:NM_008702:exon5:c.T794G:p.I265S	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.99991	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	78751006	12A2p6	cell line	sgMsh2	78751011	CCAAGG	-	Deletion	Strelka2;Vardict	2	0.3043	92	0	0	NA	exonic	Ccnq	nonframeshift deletion	Ccnq:NM_197989:exon1:c.652_657del:p.P218_W219del	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	ACC	inframe	NA	NA	NA	-6
M7_p20	chr11	78929831	12A2p6	cell line	sgMsh2	78929831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	143	0	0	NA	exonic	Nos2	synonymous SNV	Nos2:NM_010927:exon4:c.A261C:p.G87G	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999565	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr11	79680895	12A2p6	cell line	sgMsh2	79680895	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	51	0	0	NA	exonic	Rab11fip4	synonymous SNV	Rab11fip4:NM_175543:exon4:c.C444A:p.P148P	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	0.99059122	1	0.9914154	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr11	80330582	12A2p6	cell line	sgMsh2	80330582	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	92	0	0	NA	exonic	Rhbdl3	nonsynonymous SNV	Rhbdl3:NM_139228:exon5:c.T545C:p.V182A	11qB5	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9992465	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	82785352	12A2p6	cell line	sgMsh2	82785352	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	133	0	0	NA	exonic	Lig3	nonsynonymous SNV	"Lig3:NM_001291245:exon3:c.A588C:p.K196N,Lig3:NM_001291246:exon3:c.A588C:p.K196N,Lig3:NM_001291247:exon3:c.A588C:p.K196N,Lig3:NM_010716:exon3:c.A588C:p.K196N"	11qC	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999239	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M7_p20	chr11	82881778	12A2p6	cell line	sgMsh2	82881778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	80	0	0	NA	exonic	Rad51d	synonymous SNV	"Rad51d:NM_001277941:exon6:c.G525A:p.Q175Q,Rad51d:NM_001277939:exon7:c.G660A:p.Q220Q,Rad51d:NM_011235:exon7:c.G660A:p.Q220Q"	11qC	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	1	1	1	0.998527	TCT	synonymous	NA	NA	NA	NA
M7_p20	chr11	82901049	12A2p6	cell line	sgMsh2	82901049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	25	0	0	NA	exonic	Nle1	nonsynonymous SNV	Nle1:NM_145431:exon13:c.T1447C:p.W483R	11qC	chr11-69590981-82929860	4	3	1	0.9	4.205340083	NA	2	1	1	0.9690252	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	83487390	12A2p6	cell line	sgMsh2	83487390	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	256	0	0	NA	exonic	Taf15	frameshift deletion	Taf15:NM_027427:exon6:c.455delA:p.N153Tfs*12	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr11	83588833	12A2p6	cell line	sgMsh2	83588833	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	122	0	0	NA	exonic	Ccl6	nonsynonymous SNV	Ccl6:NM_009139:exon4:c.A343G:p.I115V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	84293969	12A2p6	cell line	sgMsh2	84293969	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	110	0	0	NA	exonic	Acaca	synonymous SNV	Acaca:NM_133360:exon30:c.T3810C:p.H1270H	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.7427671	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	359	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	1.25E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	86139118	12A2p6	cell line	sgMsh2	86139118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	145	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon12:c.A1699G:p.I567V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999611	ATA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr11	86328609	12A2p6	cell line	sgMsh2	86328609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	146	0	0	NA	exonic	Med13	nonsynonymous SNV	Med13:NM_001080931:exon7:c.T1010C:p.V337A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999632	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	86486500	12A2p6	cell line	sgMsh2	86486500	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	53	0	0	NA	exonic	Rnft1	nonsynonymous SNV	Rnft1:NM_029788:exon2:c.T389C:p.I130T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9933668	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	86552980	12A2p6	cell line	sgMsh2	86552980	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	170	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T513A:p.I171I,Tubd1:NM_001199046:exon4:c.T513A:p.I171I,Tubd1:NM_001199047:exon4:c.T513A:p.I171I,Tubd1:NM_019756:exon4:c.T513A:p.I171I"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.827050216	1	0.9229702	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	86771947	12A2p6	cell line	sgMsh2	86771947	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	261	0	0	NA	exonic	Dhx40	nonsynonymous SNV	Dhx40:NM_026191:exon16:c.T1918G:p.F640V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	87196947	12A2p6	cell line	sgMsh2	87196947	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	112	0	0	NA	exonic	Trim37	nonsynonymous SNV	"Trim37:NM_001363026:exon17:c.A1838T:p.D613V,Trim37:NM_001363025:exon18:c.A1883T:p.D628V,Trim37:NM_001363027:exon18:c.A1883T:p.D628V,Trim37:NM_001363028:exon18:c.A1883T:p.D628V,Trim37:NM_197987:exon18:c.A1883T:p.D628V"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997537	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	87231262	12A2p6	cell line	sgMsh2	87231262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	56	0	0	NA	exonic	Ppm1e	nonsynonymous SNV	Ppm1e:NM_177167:exon7:c.T1868C:p.V623A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9943856	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	87535599	12A2p6	cell line	sgMsh2	87535599	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	198	0	0	NA	exonic	Tex14	synonymous SNV	"Tex14:NM_001199293:exon22:c.C3486A:p.T1162T,Tex14:NM_031386:exon22:c.C3450A:p.T1150T"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.999657	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr11	87775042	12A2p6	cell line	sgMsh2	87775042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	27	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon17:c.T2605C:p.C869R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9722123	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	88844524	12A2p6	cell line	sgMsh2	88844524	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	109	0	0	NA	exonic	Akap1	synonymous SNV	"Akap1:NM_001042541:exon2:c.T1311C:p.G437G,Akap1:NM_009648:exon2:c.T1311C:p.G437G"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.999708	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	88943840	12A2p6	cell line	sgMsh2	88943840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	168	0	0	NA	exonic	Scpep1	nonsynonymous SNV	Scpep1:NM_029023:exon5:c.A503G:p.Y168C	11qC	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	93949979	12A2p6	cell line	sgMsh2	93949979	C	T	SNV	Mutect2;Vardict	2	0.057	181	0	0	NA	exonic	Nme2	nonsynonymous SNV	"Nme2:NM_001077529:exon4:c.G409A:p.E137K,Nme2:NM_008705:exon5:c.G409A:p.E137K"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.266338205	3	1.46E-08	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	94463486	12A2p6	cell line	sgMsh2	94463486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	76	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon5:c.T602C:p.V201A,Cacna1g:NM_001177888:exon5:c.T602C:p.V201A,Cacna1g:NM_001177890:exon5:c.T602C:p.V201A,Cacna1g:NM_009783:exon5:c.T602C:p.V201A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9964476	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	94570669	12A2p6	cell line	sgMsh2	94570669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	135	0	0	NA	exonic	Acsf2	nonsynonymous SNV	Acsf2:NM_153807:exon7:c.A833G:p.H278R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	94632131	12A2p6	cell line	sgMsh2	94632131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	376	0	0	NA	exonic	Lrrc59	synonymous SNV	Lrrc59:NM_133807:exon2:c.T156C:p.S52S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	1.10E-09	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	83	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.747616015	1	8.28E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	95031863	12A2p6	cell line	sgMsh2	95031863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	108	0	0	NA	exonic	Pdk2	nonsynonymous SNV	"Pdk2:NM_001361915:exon4:c.T298C:p.S100P,Pdk2:NM_133667:exon4:c.T490C:p.S164P"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996919	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	95375646	12A2p6	cell line	sgMsh2	95375646	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.396	21	0	0	NA	exonic	Fam117a	frameshift deletion	Fam117a:NM_172543:exon5:c.591delC:p.P199Qfs*15	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr11	96957655	12A2p6	cell line	sgMsh2	96957655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	85	0	0	NA	exonic	Sp2	nonsynonymous SNV	"Sp2:NM_001080964:exon4:c.A1138G:p.T380A,Sp2:NM_001363226:exon4:c.A1123G:p.T375A,Sp2:NM_030220:exon4:c.A1141G:p.T381A,Sp2:NM_001363225:exon5:c.A1123G:p.T375A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988859	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	97099192	12A2p6	cell line	sgMsh2	97099192	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	41	0	0	NA	exonic	Tbx21	nonsynonymous SNV	Tbx21:NM_019507:exon6:c.A1173C:p.E391D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9871049	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	97231984	12A2p6	cell line	sgMsh2	97231984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	118	0	0	NA	exonic	Npepps	nonsynonymous SNV	Npepps:NM_008942:exon13:c.A1444G:p.S482G	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998239	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	98092151	12A2p6	cell line	sgMsh2	98092151	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	144	0	0	NA	exonic	Fbxl20	nonsynonymous SNV	Fbxl20:NM_028149:exon13:c.A984T:p.Q328H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	98152821	12A2p6	cell line	sgMsh2	98152821	C	-	Deletion	Mutect2;Vardict	2	0.393	21	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1783delG:p.V595Ffs*6	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	ACC	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M7_p20	chr11	98398962	12A2p6	cell line	sgMsh2	98398962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	168	0	0	NA	exonic	Pgap3	nonsynonymous SNV	Pgap3:NM_001033537:exon2:c.T202C:p.C68R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	99145304	12A2p6	cell line	sgMsh2	99145304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	250	0	0	NA	exonic	Ccr7	nonsynonymous SNV	"Ccr7:NM_001301713:exon2:c.T602C:p.V201A,Ccr7:NM_007719:exon3:c.T791C:p.V264A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.708507	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	99388055	12A2p6	cell line	sgMsh2	99388055	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	282	0	0	NA	exonic	Krt10	nonsynonymous SNV	Krt10:NM_010660:exon2:c.T632G:p.L211R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	1.93E-08	CAG	nonsynonymous	GCA	9	GCAGCAGCA	NA
M7_p20	chr11	100037746	12A2p6	cell line	sgMsh2	100037746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	194	0	0	NA	exonic	Krt34	synonymous SNV	Krt34:NM_027563:exon7:c.T1152C:p.P384P	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999975	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr11	100463034	12A2p6	cell line	sgMsh2	100463034	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	170	0	0	NA	exonic	Klhl11	nonsynonymous SNV	Klhl11:NM_172565:exon2:c.A1960T:p.R654W	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999904	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	100719941	12A2p6	cell line	sgMsh2	100719941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	76	0	0	NA	exonic	Rab5c	nonsynonymous SNV	"Rab5c:NM_001305003:exon2:c.A140G:p.H47R,Rab5c:NM_024456:exon2:c.A140G:p.H47R"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9981584	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	100767017	12A2p6	cell line	sgMsh2	100767017	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	65	0	0	NA	exonic	Ghdc	nonsynonymous SNV	Ghdc:NM_031871:exon9:c.A1385G:p.N462S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	GTT	nonsynonymous	GCAG	8	GCAGGCAG	NA
M7_p20	chr11	101079697	12A2p6	cell line	sgMsh2	101079697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	17	0	0	NA	exonic	Hsd17b1	nonsynonymous SNV	Hsd17b1:NM_010475:exon5:c.T577C:p.F193L	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9523583	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	101159134	12A2p6	cell line	sgMsh2	101159134	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	224	0	0	NA	exonic	Tubg2	nonsynonymous SNV	Tubg2:NM_134028:exon6:c.T605A:p.V202E	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	101174536	12A2p6	cell line	sgMsh2	101174536	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	41	0	0	NA	exonic	Ccr10	nonsynonymous SNV	Ccr10:NM_007721:exon2:c.T167A:p.L56Q	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9709669	CAG	nonsynonymous	GCCA	9	GCCAGCCAG	NA
M7_p20	chr11	101178044	12A2p6	cell line	sgMsh2	101178044	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	109	0	0	NA	exonic	Cntnap1	nonsynonymous SNV	Cntnap1:NM_016782:exon4:c.C412T:p.L138F	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.999708	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	101296209	12A2p6	cell line	sgMsh2	101296209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	50	0	0	NA	exonic	Becn1	synonymous SNV	Becn1:NM_001359821:exon4:c.T303C:p.I101I	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr11	101296219	12A2p6	cell line	sgMsh2	101296219	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	54	0	0	NA	exonic	Becn1	nonsynonymous SNV	Becn1:NM_001359821:exon4:c.G293A:p.G98E	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9937253	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	101460511	12A2p6	cell line	sgMsh2	101460511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	67	0	0	NA	exonic	Vat1	nonsynonymous SNV	Vat1:NM_012037:exon5:c.G1003T:p.A335S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	93	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9991839	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	102205371	12A2p6	cell line	sgMsh2	102205371	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	79	0	0	NA	exonic	Hdac5	synonymous SNV	"Hdac5:NM_001077696:exon9:c.C921T:p.P307P,Hdac5:NM_001284250:exon9:c.C918T:p.P306P,Hdac5:NM_010412:exon9:c.C918T:p.P306P,Hdac5:NM_001284249:exon10:c.C795T:p.P265P,Hdac5:NM_001361596:exon10:c.C795T:p.P265P,Hdac5:NM_001284248:exon11:c.C975T:p.P325P"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9984424	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr11	102605588	12A2p6	cell line	sgMsh2	102605588	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	58	0	0	NA	exonic	Fzd2	nonsynonymous SNV	Fzd2:NM_020510:exon1:c.T857G:p.I286S	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.556039411	2	0.9318252	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	103543231	12A2p6	cell line	sgMsh2	103543231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	220	0	0	NA	exonic	Gm884	nonsynonymous SNV	Gm884:NM_001033434:exon9:c.A2583T:p.Q861H	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	105108949	12A2p6	cell line	sgMsh2	105108949	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	68	0	0	NA	exonic	Efcab3	synonymous SNV	Efcab3:NM_001081046:exon7:c.A663G:p.K221K	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9971223	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	105128756	12A2p6	cell line	sgMsh2	105128756	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	153	0	0	NA	exonic	Mettl2	nonsynonymous SNV	Mettl2:NM_172567:exon3:c.A218T:p.N73I	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999751	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	105385472	12A2p6	cell line	sgMsh2	105385472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	86	0	0	NA	exonic	Marchf10	synonymous SNV	Marchf10:NM_172568:exon8:c.A1989G:p.L663L	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	105798628	12A2p6	cell line	sgMsh2	105798628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	81	0	0	NA	exonic	Tanc2	synonymous SNV	Tanc2:NM_181071:exon7:c.A615G:p.L205L	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.998607	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr11	106037155	12A2p6	cell line	sgMsh2	106037155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	43	0	0	NA	exonic	Dcaf7	nonsynonymous SNV	Dcaf7:NM_027946:exon1:c.A32G:p.Y11C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9729148	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	106205433	12A2p6	cell line	sgMsh2	106205433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	207	0	0	NA	exonic	Ccdc47	nonsynonymous SNV	Ccdc47:NM_026009:exon7:c.A764G:p.D255G	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999988	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	106376336	12A2p6	cell line	sgMsh2	106376336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	55	0	0	NA	exonic	Prr29	nonsynonymous SNV	Prr29:NM_029345:exon4:c.A326G:p.Y109C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	TAC	nonsynonymous	CTTGC	11	CTTGCCTTGCC	NA
M7_p20	chr11	106751363	12A2p6	cell line	sgMsh2	106751363	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	175	0	0	NA	exonic	Milr1	nonsynonymous SNV	"Milr1:NM_001033435:exon1:c.T80C:p.L27P,Milr1:NM_001271372:exon1:c.T80C:p.L27P,Milr1:NM_001271373:exon1:c.T80C:p.L27P,Milr1:NM_001271374:exon1:c.T80C:p.L27P,Milr1:NM_001271375:exon1:c.T80C:p.L27P"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999927	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	106779085	12A2p6	cell line	sgMsh2	106779085	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	exonic	Polg2	nonsynonymous SNV	"Polg2:NM_001353435:exon1:c.A358G:p.R120G,Polg2:NM_015810:exon1:c.A358G:p.R120G"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	106782082	12A2p6	cell line	sgMsh2	106782082	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	262	0	0	NA	exonic	Ddx5	nonsynonymous SNV	"Ddx5:NM_007840:exon13:c.A1616T:p.N539I,Ddx5:NM_001355676:exon14:c.A1616T:p.N539I,Ddx5:NM_001355677:exon14:c.A1616T:p.N539I"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	107671123	12A2p6	cell line	sgMsh2	107671123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	55	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon29:c.T4635C:p.H1545H,Helz:NM_001368755:exon30:c.T4632C:p.H1544H"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr11	107735220	12A2p6	cell line	sgMsh2	107735220	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	91	0	0	NA	exonic	Cacng4	nonsynonymous SNV	Cacng4:NM_019431:exon4:c.G544T:p.G182C	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9992032	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	107735260	12A2p6	cell line	sgMsh2	107735260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	130	0	0	NA	exonic	Cacng4	synonymous SNV	Cacng4:NM_019431:exon4:c.T504C:p.S168S	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.99991	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	109281543	12A2p6	cell line	sgMsh2	109281543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	84	0	0	NA	exonic	Rgs9	synonymous SNV	"Rgs9:NM_001165934:exon2:c.C60T:p.I20I,Rgs9:NM_011268:exon2:c.C60T:p.I20I"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	CGA	synonymous	NA	NA	NA	NA
M7_p20	chr11	109936435	12A2p6	cell line	sgMsh2	109936435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	158	0	0	NA	exonic	Abca8b	nonsynonymous SNV	"Abca8b:NM_001362749:exon35:c.A4346G:p.Y1449C,Abca8b:NM_013851:exon36:c.A4532G:p.Y1511C"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9982098	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	110078743	12A2p6	cell line	sgMsh2	110078743	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	93	0	0	NA	exonic	Abca8a	nonsynonymous SNV	Abca8a:NM_153145:exon8:c.T1006A:p.L336M	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.882548	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	110151971	12A2p6	cell line	sgMsh2	110151971	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	152	0	0	NA	exonic	Abca9	synonymous SNV	Abca9:NM_147220:exon9:c.G1251A:p.A417A	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	ACG	synonymous	NA	NA	NA	NA
M7_p20	chr11	110210173	12A2p6	cell line	sgMsh2	110210173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	250	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon21:c.T2786C:p.I929T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	111072615	12A2p6	cell line	sgMsh2	111072615	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	219	0	0	NA	exonic	Kcnj2	nonsynonymous SNV	Kcnj2:NM_008425:exon2:c.C832A:p.P278T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.406516208	3	0.9350423	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	112784015	12A2p6	cell line	sgMsh2	112784015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	35	0	0	NA	exonic	Sox9	nonsynonymous SNV	Sox9:NM_011448:exon2:c.A638G:p.H213R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9642737	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	113625125	12A2p6	cell line	sgMsh2	113625125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	94	0	0	NA	exonic	Sstr2	nonsynonymous SNV	"Sstr2:NM_001042606:exon2:c.T869C:p.L290P,Sstr2:NM_009217:exon2:c.T869C:p.L290P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	113709409	12A2p6	cell line	sgMsh2	113709409	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.217	38	0	0	NA	exonic	Cpsf4l	synonymous SNV	"Cpsf4l:NM_001164532:exon1:c.A81C:p.L27L,Cpsf4l:NM_001362806:exon1:c.A81C:p.L27L,Cpsf4l:NM_026682:exon1:c.A81C:p.L27L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	113842148	12A2p6	cell line	sgMsh2	113842148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	66	0	0	NA	exonic	Sdk2	nonsynonymous SNV	Sdk2:NM_172800:exon21:c.A2870G:p.Y957C	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9967828	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115000810	12A2p6	cell line	sgMsh2	115000810	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	279	0	0	NA	exonic	Cd300c2	synonymous SNV	Cd300c2:NM_134158:exon2:c.T237C:p.N79N	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	2.27E-08	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr11	115260855	12A2p6	cell line	sgMsh2	115260855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	58	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T278C:p.I93T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.794342016	1	0.8333365	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115261107	12A2p6	cell line	sgMsh2	115261107	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	21	0	0	NA	exonic	Grin2c	nonsynonymous SNV	Grin2c:NM_010350:exon4:c.T26C:p.L9P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9615551	CAG	nonsynonymous	GGGC	8	GGGCGGGC	NA
M7_p20	chr11	115323645	12A2p6	cell line	sgMsh2	115323645	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	64	0	0	NA	exonic	Otop2	stopgain	"Otop2:NM_001362400:exon3:c.G227A:p.W76X,Otop2:NM_172801:exon3:c.G227A:p.W76X"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9870238	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115390987	12A2p6	cell line	sgMsh2	115390987	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	46	0	0	NA	exonic	Cdr2l	nonsynonymous SNV	Cdr2l:NM_001080929:exon3:c.A317G:p.K106R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9756005	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115581817	12A2p6	cell line	sgMsh2	115581817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	195	0	0	NA	exonic	Nup85	nonsynonymous SNV	Nup85:NM_001002929:exon15:c.T1472C:p.I491T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.224284804	3	1.02E-09	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115797158	12A2p6	cell line	sgMsh2	115797158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon28:c.T3530A:p.L1177Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9957493	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115848252	12A2p6	cell line	sgMsh2	115848252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	47	0	0	NA	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon10:c.A948G:p.S316S,Llgl2:NM_145438:exon10:c.A948G:p.S316S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9894087	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr11	115888484	12A2p6	cell line	sgMsh2	115888484	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	84	0	0	NA	exonic	Myo15b	nonsynonymous SNV	Myo15b:NM_001384233:exon53:c.T8003C:p.L2668P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	115897230	12A2p6	cell line	sgMsh2	115897230	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	36	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon8:c.T1262C:p.F421S	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8674273	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	116152494	12A2p6	cell line	sgMsh2	116152494	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	13	0	0	NA	exonic	Fbf1	synonymous SNV	"Fbf1:NM_001364078:exon14:c.T1485C:p.G495G,Fbf1:NM_001364077:exon15:c.T1488C:p.G496G,Fbf1:NM_172571:exon15:c.T1488C:p.G496G,Fbf1:NM_001364079:exon16:c.T1032C:p.G344G"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9410259	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr11	116293974	12A2p6	cell line	sgMsh2	116293974	T	C	SNV	Mutect2;Vardict	2	0.199	18	0	0	NA	exonic	Exoc7	nonsynonymous SNV	"Exoc7:NM_001162872:exon11:c.A1334G:p.Q445R,Exoc7:NM_001362839:exon11:c.A1334G:p.Q445R,Exoc7:NM_001347636:exon12:c.A1427G:p.Q476R,Exoc7:NM_001378961:exon12:c.A1403G:p.Q468R,Exoc7:NM_016857:exon12:c.A1427G:p.Q476R,Exoc7:NM_001362838:exon13:c.A1496G:p.Q499R,Exoc7:NM_001378960:exon13:c.A1496G:p.Q499R"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.929847418	1	0.9347089	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	116294024	12A2p6	cell line	sgMsh2	116294024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	21	0	0	NA	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.A1284G:p.L428L,Exoc7:NM_001362839:exon11:c.A1284G:p.L428L,Exoc7:NM_001347636:exon12:c.A1377G:p.L459L,Exoc7:NM_001378961:exon12:c.A1353G:p.L451L,Exoc7:NM_016857:exon12:c.A1377G:p.L459L,Exoc7:NM_001362838:exon13:c.A1446G:p.L482L,Exoc7:NM_001378960:exon13:c.A1446G:p.L482L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9615551	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr11	117812466	12A2p6	cell line	sgMsh2	117812466	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	123	0	0	NA	exonic	Syngr2	nonsynonymous SNV	Syngr2:NM_009304:exon2:c.C107T:p.A36V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	119486149	12A2p6	cell line	sgMsh2	119486149	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	135	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon68:c.A15438C:p.Q5146H	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9992955	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	120271785	12A2p6	cell line	sgMsh2	120271785	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	14	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.G908C:p.G303A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.9440888	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	120272629	12A2p6	cell line	sgMsh2	120272629	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	57	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon5:c.C1752A:p.H584Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9946893	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	120347261	12A2p6	cell line	sgMsh2	120347261	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	69	0	0	NA	exonic	Actg1	nonsynonymous SNV	"Actg1:NM_009609:exon4:c.T452G:p.I151S,Actg1:NM_001313923:exon5:c.T86G:p.I29S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.705562614	2	9.89E-07	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	70	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	2	1	1	0.997426	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	120785152	12A2p6	cell line	sgMsh2	120785152	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	159	0	0	NA	exonic	Gps1	nonsynonymous SNV	"Gps1:NM_001177874:exon2:c.A65C:p.D22A,Gps1:NM_001346709:exon2:c.A65C:p.D22A,Gps1:NM_001363440:exon2:c.A65C:p.D22A,Gps1:NM_145370:exon2:c.A182C:p.D61A"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9998884	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr11	121459410	12A2p6	cell line	sgMsh2	121459410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	229	0	0	NA	exonic	Tbcd	nonsynonymous SNV	Tbcd:NM_029878:exon3:c.T245C:p.M82T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999996	ATG	nonsynonymous	GAT	8	GATGATGA	NA
M7_p20	chr11	121460477	12A2p6	cell line	sgMsh2	121460477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	193	0	0	NA	exonic	Tbcd	synonymous SNV	Tbcd:NM_029878:exon4:c.T402C:p.D134D	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999973	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr12	3984561	12A2p6	cell line	sgMsh2	3984561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	87	0	0	NA	exonic	Efr3b	nonsynonymous SNV	Efr3b:NM_001082483:exon6:c.A608G:p.N203S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.794342016	1	0.8008585	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	4290933	12A2p6	cell line	sgMsh2	4290933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	84	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon13:c.T2498C:p.L833S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9988219	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	4850510	12A2p6	cell line	sgMsh2	4850510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	88	0	0	NA	exonic	Wdcp	nonsynonymous SNV	"Wdcp:NM_001170858:exon2:c.A365G:p.H122R,Wdcp:NM_173416:exon2:c.A365G:p.H122R"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.570057211	2	0.9908937	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	4891350	12A2p6	cell line	sgMsh2	4891350	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	468	0	0	NA	exonic	Ubxn2a	synonymous SNV	Ubxn2a:NM_145441:exon4:c.T255G:p.G85G	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.784996816	2	0.9436765	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	5209980	12A2p6	cell line	sgMsh2	5209980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	exonic	Klhl29	synonymous SNV	Klhl29:NM_001164493:exon3:c.A237G:p.E79E	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9856008	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr12	7978239	12A2p6	cell line	sgMsh2	7978239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	180	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon2:c.T109G:p.F37V	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9953343	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	8005953	12A2p6	cell line	sgMsh2	8005953	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	109	0	0	NA	exonic	Apob	synonymous SNV	Apob:NM_009693:exon26:c.T4434C:p.H1478H	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.99059122	1	0.9996003	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr12	8535464	12A2p6	cell line	sgMsh2	8535464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	137	0	0	NA	exonic	Slc7a15	synonymous SNV	"Slc7a15:NM_001038660:exon3:c.T936C:p.A312A,Slc7a15:NM_177802:exon4:c.T156C:p.A52A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.728925614	2	0.8517167	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	8710287	12A2p6	cell line	sgMsh2	8710287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	57	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon5:c.T477C:p.G159G,Pum2:NM_001160220:exon5:c.T477C:p.G159G,Pum2:NM_001160221:exon5:c.T477C:p.G159G,Pum2:NM_001160222:exon5:c.T477C:p.G159G,Pum2:NM_001310519:exon5:c.T477C:p.G159G,Pum2:NM_030723:exon5:c.T477C:p.G159G"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9946893	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr12	8713572	12A2p6	cell line	sgMsh2	8713572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	191	0	0	NA	exonic	Pum2	nonsynonymous SNV	"Pum2:NM_001160219:exon6:c.T728C:p.V243A,Pum2:NM_001160220:exon6:c.T728C:p.V243A,Pum2:NM_001160221:exon6:c.T728C:p.V243A,Pum2:NM_001160222:exon6:c.T728C:p.V243A,Pum2:NM_001310519:exon6:c.T728C:p.V243A,Pum2:NM_030723:exon6:c.T728C:p.V243A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.770979015	2	0.6826034	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	8922249	12A2p6	cell line	sgMsh2	8922249	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	20	0	0	NA	exonic	Laptm4a	nonsynonymous SNV	Laptm4a:NM_008640:exon1:c.T291G:p.C97W	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9594315	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	11091884	12A2p6	cell line	sgMsh2	11091884	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	115	0	0	NA	exonic	Kcns3	synonymous SNV	"Kcns3:NM_001168564:exon3:c.T813C:p.A271A,Kcns3:NM_173417:exon3:c.T813C:p.A271A"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.789669416	1	0.7341232	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	11242309	12A2p6	cell line	sgMsh2	11242309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	180	0	0	NA	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon14:c.A1673G:p.K558R	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999043	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	11262567	12A2p6	cell line	sgMsh2	11262567	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	251	0	0	NA	exonic	Gen1	nonsynonymous SNV	Gen1:NM_177331:exon2:c.A1C:p.M1L	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8774788	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	11291704	12A2p6	cell line	sgMsh2	11291704	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	60	0	0	NA	exonic	Smc6	synonymous SNV	"Smc6:NM_001324476:exon14:c.G1128T:p.R376R,Smc6:NM_025695:exon15:c.G1722T:p.R574R"	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.836395417	1	0.9147224	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr12	11457116	12A2p6	cell line	sgMsh2	11457116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	155	0	0	NA	exonic	Rad51ap2	synonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1038G:p.V346V	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.939192619	1	0.9995929	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr12	11457193	12A2p6	cell line	sgMsh2	11457193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	112	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1115G:p.Y372C	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.991466	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	11457975	12A2p6	cell line	sgMsh2	11457975	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	397	0	0	NA	exonic	Rad51ap2	nonsynonymous SNV	Rad51ap2:NM_001111118:exon1:c.A1897T:p.N633Y	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	1.29E-09	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	16822106	12A2p6	cell line	sgMsh2	16822106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	318	0	0	NA	exonic	E2f6	nonsynonymous SNV	E2f6:NM_033270:exon5:c.A550T:p.T184S	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.794342016	2	0.584958	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	16965596	12A2p6	cell line	sgMsh2	16965596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	110	0	0	NA	exonic	Rock2	synonymous SNV	Rock2:NM_009072:exon20:c.T2493C:p.N831N	12qA1.1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.99526382	1	0.9996765	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr12	21251157	12A2p6	cell line	sgMsh2	21251157	C	-	Deletion	Mutect2;Vardict	2	0.118	205	0	0	NA	exonic	Asap2	frameshift deletion	"Asap2:NM_001004364:exon20:c.1967delC:p.P657Rfs*110,Asap2:NM_001098168:exon21:c.1976delC:p.P660Rfs*110,Asap2:NM_001135192:exon21:c.1967delC:p.P657Rfs*110"	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.551366811	NA	NA	ACC	frameshift	NA	NA	NA	-1
M7_p20	chr12	21394991	12A2p6	cell line	sgMsh2	21394991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	160	0	0	NA	exonic	Ywhaq	nonsynonymous SNV	Ywhaq:NM_011739:exon4:c.A652G:p.M218V	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999832	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	24044796	12A2p6	cell line	sgMsh2	24044796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	273	0	0	NA	exonic	9030624G23Rik	nonsynonymous SNV	9030624G23Rik:NM_001256489:exon4:c.T373C:p.C125R	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.841068017	1	0.9807229	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	24712686	12A2p6	cell line	sgMsh2	24712686	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	241	0	0	NA	exonic	Rrm2	nonsynonymous SNV	Rrm2:NM_009104:exon8:c.T827C:p.L276P	12qA1.3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999998	CTG	nonsynonymous	TGCC	10	TGCCTGCCTG	NA
M7_p20	chr12	26474158	12A2p6	cell line	sgMsh2	26474158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	215	0	0	NA	exonic	Cmpk2	nonsynonymous SNV	Cmpk2:NM_020557:exon3:c.T953C:p.I318T	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9999403	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	30119426	12A2p6	cell line	sgMsh2	30119426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	218	0	0	NA	exonic	Tpo	synonymous SNV	Tpo:NM_009417:exon4:c.T309C:p.R103R	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9993383	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	31297648	12A2p6	cell line	sgMsh2	31297648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	82	0	0	NA	exonic	Lamb1	nonsynonymous SNV	Lamb1:NM_008482:exon13:c.T1585C:p.C529R	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9825226	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	31640907	12A2p6	cell line	sgMsh2	31640907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	222	0	0	NA	exonic	Dus4l	synonymous SNV	Dus4l:NM_028002:exon7:c.T744C:p.A248A	12qA2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999981	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	31928627	12A2p6	cell line	sgMsh2	31928627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	263	0	0	NA	exonic	Hbp1	nonsynonymous SNV	"Hbp1:NM_001361928:exon10:c.A1490G:p.K497R,Hbp1:NM_153198:exon10:c.A1520G:p.K507R"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.602765412	2	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	31930939	12A2p6	cell line	sgMsh2	31930939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	73	0	0	NA	exonic	Hbp1	synonymous SNV	"Hbp1:NM_001361928:exon9:c.T1134C:p.R378R,Hbp1:NM_153198:exon9:c.T1164C:p.R388R,Hbp1:NM_177993:exon9:c.T1164C:p.R388R"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9905582	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	32848727	12A2p6	cell line	sgMsh2	32848727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	175	0	0	NA	exonic	Nampt	synonymous SNV	Nampt:NM_021524:exon10:c.A1341G:p.K447K	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.967228219	1	0.9999574	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	33034997	12A2p6	cell line	sgMsh2	33034997	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	49	0	0	NA	exonic	Cdhr3	nonsynonymous SNV	Cdhr3:NM_001024478:exon19:c.C2419T:p.P807S	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9917177	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	33147779	12A2p6	cell line	sgMsh2	33147779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	50	0	0	NA	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374022:exon1:c.T45C:p.A15A,Atxn7l1:NM_001374023:exon1:c.T45C:p.A15A,Atxn7l1:NM_028139:exon1:c.T45C:p.A15A"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9921647	CTG	synonymous	GCT	11	GCTGCTGCTGC	NA
M7_p20	chr12	33364412	12A2p6	cell line	sgMsh2	33364412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	94	0	0	NA	exonic	Atxn7l1	synonymous SNV	"Atxn7l1:NM_001374024:exon8:c.A1158G:p.S386S,Atxn7l1:NM_001374022:exon10:c.A1530G:p.S510S"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.602765412	2	0.9854384	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	34373949	12A2p6	cell line	sgMsh2	34373949	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	190	0	0	NA	exonic	Hdac9	nonsynonymous SNV	"Hdac9:NM_024124:exon12:c.C1645T:p.P549S,Hdac9:NM_001271386:exon14:c.C1717T:p.P573S"	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.999427	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	37243715	12A2p6	cell line	sgMsh2	37243715	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	101	0	0	NA	exonic	Agmo	frameshift deletion	Agmo:NM_178767:exon2:c.136delT:p.F47Lfs*3	12qA3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr12	41452858	12A2p6	cell line	sgMsh2	41452858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	230	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1459G:p.T487A,Lrrn3:NM_010733:exon2:c.A1459G:p.T487A,Lrrn3:NM_001271708:exon3:c.A1459G:p.T487A"	12qB1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	176	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999931	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	51603211	12A2p6	cell line	sgMsh2	51603211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	145	0	0	NA	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon10:c.A982G:p.N328D,Coch:NM_001198835:exon11:c.A982G:p.N328D"	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999611	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	51768917	12A2p6	cell line	sgMsh2	51768917	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	347	0	0	NA	exonic	Hectd1	synonymous SNV	Hectd1:NM_144788:exon25:c.T4371C:p.S1457S	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8743076	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	51769296	12A2p6	cell line	sgMsh2	51769296	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	141	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon25:c.A3992C:p.D1331A	12qB3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.803687216	1	0.8009995	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	51956223	12A2p6	cell line	sgMsh2	51956223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	195	0	0	NA	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon5:c.T495C:p.T165T	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999976	CAG	synonymous	CCCAG	10	CCCAGCCCAG	NA
M7_p20	chr12	51958946	12A2p6	cell line	sgMsh2	51958946	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.193	148	0	0	NA	exonic	Heatr5a	nonsynonymous SNV	Heatr5a:NM_177171:exon3:c.T245G:p.V82G	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.901811818	1	0.9970982	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	53141873	12A2p6	cell line	sgMsh2	53141873	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	275	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon13:c.T6069A:p.S2023R	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.855085817	1	0.9941311	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	110	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.911157018	NA	NA	TGT	frameshift	NA	NA	NA	-1
M7_p20	chr12	54783488	12A2p6	cell line	sgMsh2	54783488	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	212	0	0	NA	exonic	Snx6	nonsynonymous SNV	Snx6:NM_026998:exon4:c.A185C:p.N62T	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999991	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	55708096	12A2p6	cell line	sgMsh2	55708096	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	92	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001112714:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_019994:exon24:c.A3409C:p.T1137P,Ralgapa1:NM_001286263:exon25:c.A3550C:p.T1184P,Ralgapa1:NM_001368814:exon25:c.A4918C:p.T1640P"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.738270815	2	0.5589763	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	59108686	12A2p6	cell line	sgMsh2	59108686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	272	0	0	NA	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001329047:exon4:c.C1187T:p.S396L,Mia2:NM_001368839:exon4:c.C1184T:p.S395L"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	3.30E-08	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	59174146	12A2p6	cell line	sgMsh2	59174146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	139	0	0	NA	exonic	Mia2	nonsynonymous SNV	"Mia2:NM_001165253:exon17:c.G1414T:p.D472Y,Mia2:NM_001165254:exon17:c.G1381T:p.D461Y,Mia2:NM_001374760:exon19:c.G1513T:p.D505Y,Mia2:NM_146034:exon19:c.G1480T:p.D494Y,Mia2:NM_001329047:exon24:c.G3289T:p.D1097Y,Mia2:NM_001368839:exon24:c.G3286T:p.D1096Y"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999456	AGA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr12	61840213	12A2p6	cell line	sgMsh2	61840213	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	154	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon3:c.G786A:p.T262T,Lrfn5:NM_178714:exon3:c.G786A:p.T262T"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999765	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr12	61843778	12A2p6	cell line	sgMsh2	61843778	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	72	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1852G:p.S618A,Lrfn5:NM_178714:exon4:c.T1852G:p.S618A"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.8934936	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	64471562	12A2p6	cell line	sgMsh2	64471562	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	248	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.G3129T:p.K1043N	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.752288615	2	0.9540997	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	64473084	12A2p6	cell line	sgMsh2	64473084	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.424	48	0	0	NA	exonic	Fscb	nonsynonymous SNV	Fscb:NM_001163271:exon1:c.C1607T:p.A536V	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9912455	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	64957140	12A2p6	cell line	sgMsh2	64957140	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	202	0	0	NA	exonic	Klhl28	frameshift deletion	Klhl28:NM_025707:exon2:c.598delT:p.Y200Mfs*2	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr12	64957332	12A2p6	cell line	sgMsh2	64957332	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	267	0	0	NA	exonic	Klhl28	nonsynonymous SNV	Klhl28:NM_025707:exon2:c.A406G:p.N136D	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	4.34E-08	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	64967733	12A2p6	cell line	sgMsh2	64967733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	238	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_001364325:exon1:c.T1757C:p.V586A,Togaram1:NM_177805:exon1:c.T1757C:p.V586A"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	65016552	12A2p6	cell line	sgMsh2	65016552	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	207	0	0	NA	exonic	Togaram1	nonsynonymous SNV	"Togaram1:NM_177805:exon17:c.T4640G:p.I1547S,Togaram1:NM_001364325:exon18:c.T4790G:p.I1597S"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999988	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	65043292	12A2p6	cell line	sgMsh2	65043292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	355	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.T379C:p.Y127H	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	1.31E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.165	134	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.770979015	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr12	65056492	12A2p6	cell line	sgMsh2	65056492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	63	0	0	NA	exonic	Prpf39	synonymous SNV	"Prpf39:NM_177806:exon10:c.A1539G:p.V513V,Prpf39:NM_001374212:exon11:c.A1182G:p.V394V,Prpf39:NM_001374213:exon12:c.A1182G:p.V394V"	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.99526382	1	0.9958323	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	65153830	12A2p6	cell line	sgMsh2	65153830	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	109	0	0	NA	exonic	Mis18bp1	nonsynonymous SNV	Mis18bp1:NM_172578:exon6:c.T1271A:p.I424N	12qC1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.789669416	1	0.7444736	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	117	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998137	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	69340984	12A2p6	cell line	sgMsh2	69340984	T	-	Deletion	Strelka2;Vardict	2	0.2759	58	0	0	NA	exonic	Nemf	frameshift deletion	Nemf:NM_025441:exon14:c.1325delA:p.K442Sfs*17	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M7_p20	chr12	69590736	12A2p6	cell line	sgMsh2	69590736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	123	0	0	NA	exonic	Sos2	nonsynonymous SNV	Sos2:NM_001135559:exon20:c.A3296G:p.D1099G	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.775651615	1	0.6016193	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	69826325	12A2p6	cell line	sgMsh2	69826325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	136	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon18:c.A1406G:p.Q469R	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.691544814	2	0.9640325	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	69969116	12A2p6	cell line	sgMsh2	69969116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	146	0	0	NA	exonic	Sav1	nonsynonymous SNV	Sav1:NM_022028:exon4:c.G907A:p.A303T	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.9975241	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	69976042	12A2p6	cell line	sgMsh2	69976042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	168	0	0	NA	exonic	Sav1	synonymous SNV	Sav1:NM_022028:exon3:c.G735A:p.E245E	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999892	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr12	70014794	12A2p6	cell line	sgMsh2	70014794	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	exonic	Nin	nonsynonymous SNV	Nin:NM_001081453:exon29:c.A6295T:p.N2099Y	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999945	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	70197745	12A2p6	cell line	sgMsh2	70197745	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	104	0	0	NA	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon13:c.A1535T:p.Y512F	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.630801013	2	0.9816945	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	70956648	12A2p6	cell line	sgMsh2	70956648	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	172	0	0	NA	exonic	Actr10	nonsynonymous SNV	Actr10:NM_019785:exon10:c.A763C:p.I255L	12qC2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9998971	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	72101985	12A2p6	cell line	sgMsh2	72101985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	143	0	0	NA	exonic	Ccdc175	nonsynonymous SNV	Ccdc175:NM_028687:exon20:c.A2398G:p.R800G	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.957883019	1	0.9997211	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	72470286	12A2p6	cell line	sgMsh2	72470286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	259	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon15:c.T1808C:p.V603A,Lrrc9:NM_001142729:exon15:c.T1811C:p.V604A,Lrrc9:NM_030070:exon15:c.T1811C:p.V604A"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.850413217	1	0.9898422	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	73109092	12A2p6	cell line	sgMsh2	73109092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	251	0	0	NA	exonic	Six4	nonsynonymous SNV	"Six4:NM_011382:exon2:c.A1100C:p.N367T,Six4:NM_001362272:exon3:c.A1076C:p.N359T"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.672854413	2	0.9999035	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	73168143	12A2p6	cell line	sgMsh2	73168143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	114	0	0	NA	exonic	Mnat1	nonsynonymous SNV	Mnat1:NM_008612:exon2:c.T233C:p.V78A	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.962555619	1	0.9991786	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	73341738	12A2p6	cell line	sgMsh2	73341738	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	254	0	0	NA	exonic	Slc38a6	nonsynonymous SNV	Slc38a6:NM_001037717:exon10:c.A725G:p.K242R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	73975036	12A2p6	cell line	sgMsh2	73975036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	142	0	0	NA	exonic	Snapc1	nonsynonymous SNV	Snapc1:NM_178392:exon8:c.A908G:p.Q303R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.997751	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	75716391	12A2p6	cell line	sgMsh2	75716391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	293	0	0	NA	exonic	Sgpp1	synonymous SNV	Sgpp1:NM_030750:exon3:c.T1015C:p.L339L	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.939192619	1	0.9999976	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	76145477	12A2p6	cell line	sgMsh2	76145477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	113	0	0	NA	exonic	Esr2	nonsynonymous SNV	"Esr2:NM_010157:exon5:c.A776G:p.H259R,Esr2:NM_207707:exon5:c.A776G:p.H259R"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.579402411	2	0.9981505	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	76270450	12A2p6	cell line	sgMsh2	76270450	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	205	0	0	NA	exonic	Mthfd1	nonsynonymous SNV	Mthfd1:NM_138745:exon2:c.C74G:p.T25S	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9970519	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	76385880	12A2p6	cell line	sgMsh2	76385880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	302	0	0	NA	exonic	Zbtb1	synonymous SNV	"Zbtb1:NM_001364323:exon2:c.A639G:p.G213G,Zbtb1:NM_178744:exon2:c.A639G:p.G213G"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	2.32E-08	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr12	76438455	12A2p6	cell line	sgMsh2	76438455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	101	0	0	NA	exonic	Ppp1r36	synonymous SNV	Ppp1r36:NM_001163103:exon10:c.A951G:p.K317K	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.570057211	2	0.9966253	AAG	synonymous	A	5	AAAAA	NA
M7_p20	chr12	76583325	12A2p6	cell line	sgMsh2	76583325	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.161	47	0	0	NA	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon36:c.A6890G:p.K2297R	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.752288615	1	0.7469498	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	76623183	12A2p6	cell line	sgMsh2	76623183	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.138	44	0	0	NA	exonic	Sptb	nonsynonymous SNV	Sptb:NM_013675:exon12:c.T1370C:p.V457A	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.644818813	2	0.5777982	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	79182818	12A2p6	cell line	sgMsh2	79182818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	101	0	0	NA	exonic	Rdh11	nonsynonymous SNV	"Rdh11:NM_001362270:exon5:c.T299C:p.V100A,Rdh11:NM_001362269:exon6:c.T632C:p.V211A,Rdh11:NM_021557:exon6:c.T680C:p.V227A"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.827050216	1	0.9093301	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	80174498	12A2p6	cell line	sgMsh2	80174498	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	340	0	0	NA	exonic	Actn1	nonsynonymous SNV	"Actn1:NM_001346669:exon15:c.A1780C:p.T594P,Actn1:NM_001379075:exon15:c.A1780C:p.T594P,Actn1:NM_001379076:exon15:c.A1585C:p.T529P,Actn1:NM_134156:exon15:c.A1780C:p.T594P"	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	1.71E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	80490883	12A2p6	cell line	sgMsh2	80490883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	203	0	0	NA	exonic	Exd2	synonymous SNV	Exd2:NM_133798:exon6:c.T1239C:p.I413I	12qC3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.09313643	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr12	80967620	12A2p6	cell line	sgMsh2	80967620	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	48	0	0	NA	exonic	Slc10a1	nonsynonymous SNV	"Slc10a1:NM_001177561:exon1:c.A325G:p.T109A,Slc10a1:NM_011387:exon1:c.A325G:p.T109A,Slc10a1:NM_001361972:exon2:c.A325G:p.T109A"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9912455	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	81724281	12A2p6	cell line	sgMsh2	81724281	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	107	0	0	NA	exonic	Map3k9	synonymous SNV	Map3k9:NM_001174107:exon10:c.A2532G:p.Q844Q	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996742	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr12	81981013	12A2p6	cell line	sgMsh2	81981013	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.105	59	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon26:c.T4850C:p.L1617P	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.49062301	2	0.9525909	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	83555228	12A2p6	cell line	sgMsh2	83555228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	245	0	0	NA	exonic	Zfyve1	nonsynonymous SNV	"Zfyve1:NM_001359168:exon4:c.T209C:p.V70A,Zfyve1:NM_001359166:exon7:c.T1454C:p.V485A,Zfyve1:NM_183154:exon7:c.T1454C:p.V485A,Zfyve1:NM_001359167:exon8:c.T1454C:p.V485A"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.845740617	1	0.9835236	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	83784299	12A2p6	cell line	sgMsh2	83784299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	61	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon23:c.A3161G:p.D1054G,Papln:NM_001205343:exon24:c.A3227G:p.D1076G"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.719580414	1	0.544948	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	83786790	12A2p6	cell line	sgMsh2	83786790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	99	0	0	NA	exonic	Papln	nonsynonymous SNV	"Papln:NM_130887:exon25:c.T3413C:p.L1138P,Papln:NM_001205343:exon26:c.T3479C:p.L1160P"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.99059122	1	0.999321	CTG	nonsynonymous	GCCT	13	GCCTGCCTCCTGC	NA
M7_p20	chr12	83952501	12A2p6	cell line	sgMsh2	83952501	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	178	0	0	NA	exonic	Riox1	stoploss	Riox1:NM_023633:exon1:c.T1810A:p.X604K	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999939	TTA	nonsynonymous	AGTT	8	AGTTAGTT	NA
M7_p20	chr12	84996859	12A2p6	cell line	sgMsh2	84996859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	25	0	0	NA	exonic	Ylpm1	nonsynonymous SNV	"Ylpm1:NM_001347421:exon1:c.T370C:p.Y124H,Ylpm1:NM_178363:exon1:c.T370C:p.Y124H"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9690252	GTA	nonsynonymous	AGC	11	AGCAGCAGCAG	NA
M7_p20	chr12	85042138	12A2p6	cell line	sgMsh2	85042138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	217	0	0	NA	exonic	Ylpm1	synonymous SNV	"Ylpm1:NM_001347421:exon8:c.T2916C:p.R972R,Ylpm1:NM_178363:exon9:c.T5034C:p.R1678R"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.976573419	1	0.9999967	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr12	85139623	12A2p6	cell line	sgMsh2	85139623	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	45	0	0	NA	exonic	Rps6kl1	nonsynonymous SNV	"Rps6kl1:NM_001364317:exon6:c.A662T:p.Y221F,Rps6kl1:NM_001364315:exon7:c.A710T:p.Y237F,Rps6kl1:NM_001364316:exon7:c.A680T:p.Y227F,Rps6kl1:NM_146244:exon7:c.A710T:p.Y237F"	12qD1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9896629	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	86680169	12A2p6	cell line	sgMsh2	86680169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Vash1	nonsynonymous SNV	Vash1:NM_177354:exon1:c.A182T:p.E61V	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9988219	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	86720492	12A2p6	cell line	sgMsh2	86720492	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	62	0	0	NA	exonic	Angel1	nonsynonymous SNV	Angel1:NM_144524:exon5:c.T1109A:p.L370Q	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9959796	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	87077206	12A2p6	cell line	sgMsh2	87077206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	577	0	0	NA	exonic	Tmem63c	nonsynonymous SNV	"Tmem63c:NM_001361704:exon17:c.T1457C:p.L486P,Tmem63c:NM_001361705:exon17:c.T1457C:p.L486P,Tmem63c:NM_172583:exon18:c.T1457C:p.L486P"	12qD2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.883121418	1	0.9999986	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	88795504	12A2p6	cell line	sgMsh2	88795504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	267	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.G320A:p.S107N	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	4.34E-08	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	89348299	12A2p6	cell line	sgMsh2	89348299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	257	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon7:c.A979G:p.M327V,Nrxn3:NM_001198587:exon8:c.A2098G:p.M700V"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.784996816	2	0.651546	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	90331934	12A2p6	cell line	sgMsh2	90331934	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	148	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_001252074:exon7:c.G1228T:p.A410S,Nrxn3:NM_001198587:exon20:c.G4240T:p.A1414S"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999671	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	90332176	12A2p6	cell line	sgMsh2	90332176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	72	0	0	NA	exonic	Nrxn3	synonymous SNV	"Nrxn3:NM_001252074:exon7:c.T1470C:p.S490S,Nrxn3:NM_001198587:exon20:c.T4482C:p.S1494S,Nrxn3:NM_172544:exon20:c.T3069C:p.S1023S"	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9935196	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr12	91537344	12A2p6	cell line	sgMsh2	91537344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	79	0	0	NA	exonic	Tshr	nonsynonymous SNV	Tshr:NM_011648:exon10:c.A1055G:p.Y352C	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9984424	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	91648453	12A2p6	cell line	sgMsh2	91648453	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	118	0	0	NA	exonic	Ston2	nonsynonymous SNV	Ston2:NM_175367:exon5:c.G1180T:p.G394C	12qD3	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.691544814	2	0.9297331	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	98435226	12A2p6	cell line	sgMsh2	98435226	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	98	0	0	NA	exonic	Kcnk10	nonsynonymous SNV	"Kcnk10:NM_001316664:exon7:c.T1147C:p.F383L,Kcnk10:NM_001316665:exon7:c.T1198C:p.F400L,Kcnk10:NM_029911:exon7:c.T1189C:p.F397L"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9994612	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	94	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.99059122	1	0.9991151	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr12	98783698	12A2p6	cell line	sgMsh2	98783698	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	166	0	0	NA	exonic	Zc3h14	nonsynonymous SNV	"Zc3h14:NM_001160108:exon3:c.T586A:p.C196S,Zc3h14:NM_001364405:exon9:c.T931A:p.C311S,Zc3h14:NM_001160107:exon10:c.T1396A:p.C466S,Zc3h14:NM_001364404:exon10:c.T1006A:p.C336S,Zc3h14:NM_001008506:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364402:exon11:c.T1471A:p.C491S,Zc3h14:NM_001364401:exon12:c.T1789A:p.C597S,Zc3h14:NM_001364403:exon12:c.T1399A:p.C467S,Zc3h14:NM_001364400:exon13:c.T1864A:p.C622S,Zc3h14:NM_029334:exon13:c.T1864A:p.C622S"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9994457	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	101058739	12A2p6	cell line	sgMsh2	101058739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	147	0	0	NA	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon4:c.A500G:p.E167G,Ppp4r3a:NM_211355:exon4:c.A500G:p.E167G"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999652	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	101541507	12A2p6	cell line	sgMsh2	101541507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	145	0	0	NA	exonic	Catsperb	nonsynonymous SNV	Catsperb:NM_173023:exon16:c.T1532C:p.F511S	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.668181813	2	0.9908641	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	101651104	12A2p6	cell line	sgMsh2	101651104	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	77	0	0	NA	exonic	Tc2n	nonsynonymous SNV	"Tc2n:NM_001082976:exon11:c.T1247A:p.V416E,Tc2n:NM_028924:exon11:c.T1247A:p.V416E"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9982584	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	127	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9992011	TTC	synonymous	NA	NA	NA	NA
M7_p20	chr12	102785347	12A2p6	cell line	sgMsh2	102785347	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	190	0	0	NA	exonic	Btbd7	nonsynonymous SNV	"Btbd7:NM_001377026:exon11:c.C3157T:p.R1053W,Btbd7:NM_172806:exon12:c.C3157T:p.R1053W"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.999427	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	103169710	12A2p6	cell line	sgMsh2	103169710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	146	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon45:c.A7229G:p.D2410G	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999632	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	103173515	12A2p6	cell line	sgMsh2	103173515	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	308	0	0	NA	exonic	Unc79	synonymous SNV	Unc79:NM_001081017:exon47:c.A7533G:p.S2511S	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.719580414	2	0.9993708	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr12	103424065	12A2p6	cell line	sgMsh2	103424065	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	87	0	0	NA	exonic	Ddx24	nonsynonymous SNV	"Ddx24:NM_001159502:exon2:c.A666T:p.K222N,Ddx24:NM_001364162:exon2:c.A528T:p.K176N,Ddx24:NM_001364163:exon2:c.A528T:p.K176N,Ddx24:NM_020494:exon2:c.A528T:p.K176N"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9990037	ATT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr12	103648638	12A2p6	cell line	sgMsh2	103648638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	326	0	0	NA	exonic	Serpina6	synonymous SNV	Serpina6:NM_007618:exon4:c.T948C:p.D316D	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.775651615	2	0.09257304	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr12	103950807	12A2p6	cell line	sgMsh2	103950807	A	G	SNV	Mutect2;Vardict	2	0.046	307	0	0	NA	exonic	Serpina1e	nonsynonymous SNV	Serpina1e:NM_009247:exon2:c.T602C:p.V201A	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.214939604	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	104038223	12A2p6	cell line	sgMsh2	104038223	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	140	0	0	NA	exonic	Serpina12	nonsynonymous SNV	Serpina12:NM_026535:exon2:c.G149A:p.R50Q	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.672854413	2	0.9859706	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	104103241	12A2p6	cell line	sgMsh2	104103241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	179	0	0	NA	exonic	Serpina5	synonymous SNV	Serpina5:NM_172953:exon3:c.A711G:p.E237E	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.799014616	1	0.722866	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	104115987	12A2p6	cell line	sgMsh2	104115987	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	162	0	0	NA	exonic	Serpina3a	synonymous SNV	Serpina3a:NM_001167705:exon2:c.T18G:p.A6A	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.705562614	2	0.9736021	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr12	104130656	12A2p6	cell line	sgMsh2	104130656	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	189	0	0	NA	exonic	Serpina3b	nonsynonymous SNV	Serpina3b:NM_173024:exon2:c.G195T:p.K65N	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.224284804	3	1.04E-09	AGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	104696556	12A2p6	cell line	sgMsh2	104696556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	29	0	0	NA	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon23:c.T4765C:p.L1589L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9750797	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	104696697	12A2p6	cell line	sgMsh2	104696697	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.113	100	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon23:c.G4624A:p.D1542N	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.52800381	2	0.998348	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	104729211	12A2p6	cell line	sgMsh2	104729211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	251	0	0	NA	exonic	Dicer1	synonymous SNV	Dicer1:NM_148948:exon5:c.T460C:p.L154L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999961	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	105032886	12A2p6	cell line	sgMsh2	105032886	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	27	0	0	NA	exonic	Glrx5	nonsynonymous SNV	Glrx5:NM_028419:exon1:c.T187G:p.C63G	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9722123	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	105164467	12A2p6	cell line	sgMsh2	105164467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	218	0	0	NA	exonic	Tcl1b1	synonymous SNV	Tcl1b1:NM_013773:exon2:c.T208C:p.L70L	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.766306415	2	0.8141631	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr12	105809376	12A2p6	cell line	sgMsh2	105809376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	377	0	0	NA	exonic	Papola	nonsynonymous SNV	"Papola:NM_001347440:exon8:c.T641C:p.V214A,Papola:NM_011112:exon8:c.T641C:p.V214A"	12qE	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.691544814	2	0.9999971	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	108199358	12A2p6	cell line	sgMsh2	108199358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	257	0	0	NA	exonic	Ccnk	synonymous SNV	Ccnk:NM_009832:exon11:c.A1098G:p.P366P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999999	CAT	synonymous	CACC	8	CACCCACC	NA
M7_p20	chr12	108806507	12A2p6	cell line	sgMsh2	108806507	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	143	0	0	NA	exonic	Yy1	synonymous SNV	Yy1:NM_009537:exon2:c.A708T:p.T236T	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.658836613	2	0.993345	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	109027407	12A2p6	cell line	sgMsh2	109027407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	46	0	0	NA	exonic	Wdr25	synonymous SNV	Wdr25:NM_177602:exon7:c.T1548C:p.P516P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9902196	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr12	110639846	12A2p6	cell line	sgMsh2	110639846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	111	0	0	NA	exonic	Dync1h1	nonsynonymous SNV	Dync1h1:NM_030238:exon36:c.T7349C:p.L2450P	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.8976416	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	110855054	12A2p6	cell line	sgMsh2	110855054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	30	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon2:c.A301G:p.T101A,Zfp839:NM_028365:exon2:c.A301G:p.T101A"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	0.9732071	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	110926319	12A2p6	cell line	sgMsh2	110926319	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	152	0	0	NA	exonic	Tecpr2	nonsynonymous SNV	"Tecpr2:NM_001289510:exon6:c.T794G:p.V265G,Tecpr2:NM_001081057:exon7:c.T794G:p.V265G"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.747616015	2	0.7836675	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	111318810	12A2p6	cell line	sgMsh2	111318810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	74	0	0	NA	exonic	Cdc42bpb	nonsynonymous SNV	Cdc42bpb:NM_183016:exon15:c.A2059G:p.R687G	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9979409	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	111669725	12A2p6	cell line	sgMsh2	111669725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	100	0	0	NA	exonic	Ckb	synonymous SNV	Ckb:NM_021273:exon8:c.T984C:p.A328A	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.813032416	1	0.8665199	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr12	111831590	12A2p6	cell line	sgMsh2	111831590	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	74	0	0	NA	exonic	Ppp1r13b	synonymous SNV	Ppp1r13b:NM_011625:exon15:c.C2892T:p.V964V	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.775651615	1	7.70E-09	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	68	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	2	1	1	0.9971223	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	111963295	12A2p6	cell line	sgMsh2	111963295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	168	0	0	NA	exonic	Atp5mpl	nonsynonymous SNV	"Atp5mpl:NM_001361914:exon2:c.T59C:p.V20A,Atp5mpl:NM_027360:exon2:c.T59C:p.V20A"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8801648	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	112123319	12A2p6	cell line	sgMsh2	112123319	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	165	0	0	NA	exonic	Aspg	synonymous SNV	Aspg:NM_001081169:exon12:c.T1290C:p.S430S	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.766306415	2	0.6504331	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr12	112600285	12A2p6	cell line	sgMsh2	112600285	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	51	0	0	NA	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon2:c.G283A:p.A95T,Inf2:NM_198411:exon2:c.G283A:p.A95T"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.962555619	1	0.9867202	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	113068082	12A2p6	cell line	sgMsh2	113068082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	87	0	0	NA	exonic	Pacs2	nonsynonymous SNV	"Pacs2:NM_001291445:exon18:c.A1907G:p.D636G,Pacs2:NM_001081170:exon19:c.A1997G:p.D666G,Pacs2:NM_001291444:exon19:c.A2003G:p.D668G"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9844833	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	113130589	12A2p6	cell line	sgMsh2	113130589	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	59	0	0	NA	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001364622:exon11:c.A1022C:p.N341T,Mta1:NM_001364623:exon11:c.A1022C:p.N341T,Mta1:NM_054081:exon11:c.A1022C:p.N341T,Mta1:NM_001346696:exon12:c.A1073C:p.N358T,Mta1:NM_001364620:exon12:c.A1073C:p.N358T,Mta1:NM_001364621:exon12:c.A1073C:p.N358T"	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.864431017	1	0.9467202	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	113490367	12A2p6	cell line	sgMsh2	113490367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	461	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T803C:p.V268A	12qF1	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.976573419	1	1.02E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	116059469	12A2p6	cell line	sgMsh2	116059469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	0	0	NA	exonic	Zfp386	nonsynonymous SNV	"Zfp386:NM_001004066:exon3:c.A806T:p.E269V,Zfp386:NM_019565:exon3:c.A701T:p.E234V"	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9996722	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	116841323	12A2p6	cell line	sgMsh2	116841323	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	377	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon5:c.T457A:p.Y153N	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.9222863	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	117233326	12A2p6	cell line	sgMsh2	117233326	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	185	0	0	NA	exonic	Ptprn2	nonsynonymous SNV	Ptprn2:NM_011215:exon17:c.G2419T:p.G807C	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.696217414	2	0.9929211	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr12	118298898	12A2p6	cell line	sgMsh2	118298898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	118	0	0	NA	exonic	Sp4	nonsynonymous SNV	"Sp4:NM_001166385:exon3:c.A1412G:p.Q471R,Sp4:NM_009239:exon3:c.A1412G:p.Q471R"	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	0.999706	CTG	nonsynonymous	CTGGAC	12	CTGGACCTGGAC	NA
M7_p20	chr12	118927422	12A2p6	cell line	sgMsh2	118927422	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	118	0	0	NA	exonic	Abcb5	nonsynonymous SNV	Abcb5:NM_029961:exon13:c.A1339T:p.T447S	12qF2	chr12-3501831-119465464	5	3	2	0.9	4.205340083	NA	1	0.827050216	1	0.91288	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	3577004	12A2p6	cell line	sgMsh2	3577004	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	241	0	0	NA	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon14:c.G2615A:p.S872N,Tasor2:NM_134063:exon14:c.G2945A:p.S982N"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	3588492	12A2p6	cell line	sgMsh2	3588492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	71	0	0	NA	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon11:c.T1238C:p.L413P,Tasor2:NM_134063:exon11:c.T1238C:p.L413P"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9975657	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	4237042	12A2p6	cell line	sgMsh2	4237042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	112	0	0	NA	exonic	Akr1c19	nonsynonymous SNV	Akr1c19:NM_001013785:exon3:c.T259C:p.C87R	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997537	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	6577459	12A2p6	cell line	sgMsh2	6577459	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	91	0	0	NA	exonic	Pitrm1	synonymous SNV	"Pitrm1:NM_001360106:exon24:c.T2709G:p.A903A,Pitrm1:NM_145131:exon24:c.T2712G:p.A904A"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr13	8847644	12A2p6	cell line	sgMsh2	8847644	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	175	0	0	NA	exonic	Wdr37	nonsynonymous SNV	"Wdr37:NM_001039388:exon7:c.T575A:p.L192H,Wdr37:NM_172445:exon7:c.T575A:p.L192H"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999927	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	8991761	12A2p6	cell line	sgMsh2	8991761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	101	0	0	NA	exonic	Gtpbp4	synonymous SNV	Gtpbp4:NM_027000:exon4:c.T414C:p.C138C	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.929847418	1	0.9959618	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr13	9575459	12A2p6	cell line	sgMsh2	9575459	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	143	0	0	NA	exonic	Dip2c	nonsynonymous SNV	Dip2c:NM_001081426:exon16:c.A1854G:p.I618M	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999565	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	9690368	12A2p6	cell line	sgMsh2	9690368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	201	0	0	NA	exonic	Zmynd11	synonymous SNV	"Zmynd11:NM_001347479:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347480:exon11:c.T1143C:p.S381S,Zmynd11:NM_001347470:exon12:c.T1305C:p.S435S,Zmynd11:NM_001347471:exon12:c.T1305C:p.S435S"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999946	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr13	11587341	12A2p6	cell line	sgMsh2	11587341	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	91	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon94:c.A13654G:p.R4552G	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	CTG	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr13	11595649	12A2p6	cell line	sgMsh2	11595649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	154	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon90:c.T12290C:p.V4097A	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999765	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	12212733	12A2p6	cell line	sgMsh2	12212733	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	185	0	0	NA	exonic	Mtr	nonsynonymous SNV	Mtr:NM_001081128:exon21:c.A2206T:p.I736F	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	12429781	12A2p6	cell line	sgMsh2	12429781	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	213	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon33:c.T4611C:p.G1537G	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.5345485	GTG	synonymous	GTG	8	GTGGTGGT	NA
M7_p20	chr13	13635189	12A2p6	cell line	sgMsh2	13635189	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	111	0	0	NA	exonic	Lyst	synonymous SNV	Lyst:NM_010748:exon5:c.T1443C:p.S481S	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.350445007	3	0.009967652	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr13	13730347	12A2p6	cell line	sgMsh2	13730347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	177	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon42:c.A9608G:p.K3203R	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999935	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	13759442	12A2p6	cell line	sgMsh2	13759442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	124	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon48:c.T10724C:p.I3575T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998741	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	14009654	12A2p6	cell line	sgMsh2	14009654	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	246	0	0	NA	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon7:c.A638G:p.N213S	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	GTT	nonsynonymous	TGTTT	10	TGTTTTGTTT	NA
M7_p20	chr13	14014753	12A2p6	cell line	sgMsh2	14014753	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	161	0	0	NA	exonic	Tbce	nonsynonymous SNV	Tbce:NM_178337:exon5:c.A442T:p.I148F	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999841	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	14316041	12A2p6	cell line	sgMsh2	14316041	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	121	0	0	NA	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.G2365A:p.A789T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	15660914	12A2p6	cell line	sgMsh2	15660914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	55	0	0	NA	exonic	Gli3	nonsynonymous SNV	Gli3:NM_008130:exon9:c.A1276G:p.T426A	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	16027074	12A2p6	cell line	sgMsh2	16027074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	121	0	0	NA	exonic	Inhba	nonsynonymous SNV	Inhba:NM_008380:exon5:c.A1220C:p.N407T	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.999643	AAC	nonsynonymous	CAT	8	CATCATCA	NA
M7_p20	chr13	17718224	12A2p6	cell line	sgMsh2	17718224	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.078	157	0	0	NA	exonic	Cdk13	nonsynonymous SNV	"Cdk13:NM_001081058:exon14:c.A4373G:p.N1458S,Cdk13:NM_027118:exon14:c.A4193G:p.N1398S"	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.364462807	3	0.9966828	GTT	nonsynonymous	ATAGTT	12	ATAGTTATAGTT	NA
M7_p20	chr13	18378517	12A2p6	cell line	sgMsh2	18378517	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	94	0	0	NA	exonic	Pou6f2	synonymous SNV	Pou6f2:NM_175006:exon2:c.A231G:p.T77T	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr13	19630076	12A2p6	cell line	sgMsh2	19630076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	118	0	0	NA	exonic	Sfrp4	nonsynonymous SNV	Sfrp4:NM_016687:exon5:c.C802T:p.L268F	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9955505	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	19729324	12A2p6	cell line	sgMsh2	19729324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	98	0	0	NA	exonic	Gpr141b	nonsynonymous SNV	Gpr141b:NM_175688:exon2:c.A557G:p.N186S	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9940747	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	19729389	12A2p6	cell line	sgMsh2	19729389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	74	0	0	NA	exonic	Gpr141b	synonymous SNV	Gpr141b:NM_175688:exon2:c.A492G:p.L164L	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	GTA	synonymous	A	8	AAAAAAAA	NA
M7_p20	chr13	20979491	12A2p6	cell line	sgMsh2	20979491	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	156	0	0	NA	exonic	Aoah	frameshift deletion	Aoah:NM_012054:exon13:c.963delT:p.L322fs*0	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7_p20	chr13	21364017	12A2p6	cell line	sgMsh2	21364017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	62	0	0	NA	exonic	Zscan12	nonsynonymous SNV	Zscan12:NM_016684:exon2:c.A368G:p.D123G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	22293996	12A2p6	cell line	sgMsh2	22293996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	200	0	0	NA	exonic	Vmn1r196	synonymous SNV	Vmn1r196:NM_001167541:exon1:c.T804C:p.T268T	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999982	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr13	22524511	12A2p6	cell line	sgMsh2	22524511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	680	0	0	NA	exonic	Vmn1r203	nonsynonymous SNV	Vmn1r203:NM_134236:exon1:c.A461G:p.N154S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23163522	12A2p6	cell line	sgMsh2	23163522	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	132	0	0	NA	exonic	Vmn1r219	nonsynonymous SNV	Vmn1r219:NM_134238:exon1:c.T880G:p.C294G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.724253014	2	0.8581411	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.536	333	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	2.06E-09	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23478418	12A2p6	cell line	sgMsh2	23478418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	224	0	0	NA	exonic	Btn2a2	nonsynonymous SNV	"Btn2a2:NM_001289614:exon7:c.T1334C:p.I445T,Btn2a2:NM_001289615:exon8:c.T1361C:p.I454T,Btn2a2:NM_175938:exon8:c.T1361C:p.I454T"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23543231	12A2p6	cell line	sgMsh2	23543231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	222	0	0	NA	exonic	H2bc9	nonsynonymous SNV	H2bc9:NM_178197:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M7_p20	chr13	23573953	12A2p6	cell line	sgMsh2	23573953	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.214	175	0	0	NA	exonic	H2bc7	frameshift deletion	H2bc7:NM_178195:exon1:c.238delC:p.R80Afs*50	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.99993642	NA	NA	CGG	frameshift	NA	NA	NA	-1
M7_p20	chr13	23574069	12A2p6	cell line	sgMsh2	23574069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	213	0	0	NA	exonic	H2bc7	nonsynonymous SNV	H2bc7:NM_178195:exon1:c.A122G:p.Y41C	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999991	GTA	nonsynonymous	GTACAC	12	GTACACGTACAC	NA
M7_p20	chr13	23575860	12A2p6	cell line	sgMsh2	23575860	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.248	22	0	0	NA	exonic	H3c4	nonsynonymous SNV	H3c4:NM_178204:exon1:c.A59G:p.Q20R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9635712	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23752398	12A2p6	cell line	sgMsh2	23752398	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.222	68	0	0	NA	exonic	H3c2	nonsynonymous SNV	H3c2:NM_178203:exon1:c.A19T:p.T7S	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9971223	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	23785909	12A2p6	cell line	sgMsh2	23785909	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	146	0	0	NA	exonic	Trim38	synonymous SNV	Trim38:NM_001029935:exon2:c.T450C:p.R150R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999632	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr13	23814941	12A2p6	cell line	sgMsh2	23814941	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	99	0	0	NA	exonic	Slc17a2	nonsynonymous SNV	"Slc17a2:NM_001377113:exon4:c.T316G:p.L106V,Slc17a2:NM_144836:exon4:c.T316G:p.L106V"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.999321	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	27245800	12A2p6	cell line	sgMsh2	27245800	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	148	0	0	NA	exonic	Prl3b1	nonsynonymous SNV	Prl3b1:NM_008865:exon3:c.A220C:p.T74P	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9987617	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	27385231	12A2p6	cell line	sgMsh2	27385231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	241	0	0	NA	exonic	Prl2b1	nonsynonymous SNV	Prl2b1:NM_025532:exon4:c.A383G:p.H128R	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	27437193	12A2p6	cell line	sgMsh2	27437193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	167	0	0	NA	exonic	Prl8a6	nonsynonymous SNV	"Prl8a6:NM_001271378:exon2:c.T53C:p.V18A,Prl8a6:NM_001271379:exon2:c.T53C:p.V18A,Prl8a6:NM_011167:exon2:c.T50C:p.V17A"	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.649491413	2	0.9987337	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M7_p20	chr13	27662719	12A2p6	cell line	sgMsh2	27662719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	85	0	0	NA	exonic	Prl7a2	nonsynonymous SNV	Prl7a2:NM_011168:exon4:c.T310C:p.Y104H	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.556039411	2	0.9918166	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	30381461	12A2p6	cell line	sgMsh2	30381461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	276	0	0	NA	exonic	Agtr1a	nonsynonymous SNV	Agtr1a:NM_177322:exon3:c.T508C:p.Y170H	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	32127986	12A2p6	cell line	sgMsh2	32127986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	96	0	0	NA	exonic	Gmds	synonymous SNV	Gmds:NM_146041:exon5:c.C459A:p.A153A	13qA3.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993975	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr13	40015381	12A2p6	cell line	sgMsh2	40015381	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	172	0	0	NA	exonic	Ofcc1	synonymous SNV	Ofcc1:NM_172143:exon17:c.C2529T:p.H843H	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	TGT	synonymous	NA	NA	NA	NA
M7_p20	chr13	40918635	12A2p6	cell line	sgMsh2	40918635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	0	0	NA	exonic	Gcnt2	synonymous SNV	Gcnt2:NM_133219:exon1:c.A753G:p.P251P	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999722	CAC	synonymous	CTCCAC	12	CTCCACCTCCAC	NA
M7_p20	chr13	41316168	12A2p6	cell line	sgMsh2	41316168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	190	0	0	NA	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1508T:p.H503L,Nedd9:NM_001111324:exon6:c.A1508T:p.H503L"	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9996685	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	41316172	12A2p6	cell line	sgMsh2	41316172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	187	0	0	NA	exonic	Nedd9	nonsynonymous SNV	"Nedd9:NM_017464:exon5:c.A1504G:p.S502G,Nedd9:NM_001111324:exon6:c.A1504G:p.S502G"	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9998377	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	43799618	12A2p6	cell line	sgMsh2	43799618	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	131	0	0	NA	exonic	Cd83	nonsynonymous SNV	Cd83:NM_001289915:exon4:c.T365C:p.L122P	13qA4	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9998496	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	46299456	12A2p6	cell line	sgMsh2	46299456	G	A	SNV	Mutect2;Vardict	2	0.137	37	0	0	NA	exonic	Stmnd1	nonsynonymous SNV	Stmnd1:NM_001005422:exon5:c.G607A:p.A203T	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.640146213	1	0.000946491	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	46830848	12A2p6	cell line	sgMsh2	46830848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	64	0	0	NA	exonic	Kif13a	nonsynonymous SNV	Kif13a:NM_010617:exon6:c.T440C:p.V147A	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9964035	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	49061054	12A2p6	cell line	sgMsh2	49061054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	38	0	0	NA	exonic	Wnk2	nonsynonymous SNV	"Wnk2:NM_001290311:exon20:c.C4345T:p.P1449S,Wnk2:NM_001290313:exon20:c.C4345T:p.P1449S,Wnk2:NM_029361:exon20:c.C4345T:p.P1449S"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	49722263	12A2p6	cell line	sgMsh2	49722263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	73	0	0	NA	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon23:c.G2425A:p.V809I	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.855085817	1	0.9460656	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	50417950	12A2p6	cell line	sgMsh2	50417950	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	57	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon1:c.A53T:p.E18V	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9255753	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	53118802	12A2p6	cell line	sgMsh2	53118802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	39	0	0	NA	exonic	Ror2	nonsynonymous SNV	Ror2:NM_013846:exon6:c.C826T:p.L276F	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	54053932	12A2p6	cell line	sgMsh2	54053932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	98	0	0	NA	exonic	Drd1	nonsynonymous SNV	"Drd1:NM_001291801:exon2:c.T262C:p.F88L,Drd1:NM_010076:exon2:c.T262C:p.F88L"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	54552616	12A2p6	cell line	sgMsh2	54552616	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	143	0	0	NA	exonic	4833439L19Rik	nonsynonymous SNV	"4833439L19Rik:NM_001252648:exon5:c.T287G:p.F96C,4833439L19Rik:NM_001252647:exon6:c.T593G:p.F198C,4833439L19Rik:NM_001252646:exon7:c.T851G:p.F284C,4833439L19Rik:NM_001252645:exon8:c.T851G:p.F284C,4833439L19Rik:NM_133797:exon9:c.T908G:p.F303C"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.9938982	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	54578820	12A2p6	cell line	sgMsh2	54578820	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	63	0	0	NA	exonic	Arl10	nonsynonymous SNV	"Arl10:NM_001377082:exon3:c.A410G:p.Y137C,Arl10:NM_019968:exon3:c.A410G:p.Y137C"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9921599	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	54736542	12A2p6	cell line	sgMsh2	54736542	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	56	0	0	NA	exonic	Cdhr2	nonsynonymous SNV	Cdhr2:NM_001033364:exon32:c.T3889C:p.S1297P	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9943856	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	55422034	12A2p6	cell line	sgMsh2	55422034	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	190	0	0	NA	exonic	F12	synonymous SNV	F12:NM_021489:exon5:c.T330C:p.C110C	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999969	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr13	55670331	12A2p6	cell line	sgMsh2	55670331	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	94	0	0	NA	exonic	Ddx46	nonsynonymous SNV	Ddx46:NM_001282055:exon18:c.A2414G:p.D805G	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9955189	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	56527283	12A2p6	cell line	sgMsh2	56527283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	154	0	0	NA	exonic;splicing	Fbxl21;Fbxl21	nonsynonymous SNV	Fbxl21:NM_001359807:exon3:c.T446C:p.V149A	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999765	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	56545752	12A2p6	cell line	sgMsh2	56545752	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	79	0	0	NA	exonic	Lect2	nonsynonymous SNV	Lect2:NM_010702:exon3:c.T156G:p.H52Q	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.993182	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	57429422	12A2p6	cell line	sgMsh2	57429422	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	45	0	0	NA	exonic	Spock1	nonsynonymous SNV	"Spock1:NM_001166463:exon11:c.T1193C:p.L398P,Spock1:NM_001166466:exon12:c.T1199C:p.L400P,Spock1:NM_009262:exon12:c.T1202C:p.L401P"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9874595	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	59701255	12A2p6	cell line	sgMsh2	59701255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	86	0	0	NA	exonic	Spata31d1a	nonsynonymous SNV	Spata31d1a:NM_028157:exon4:c.T3058C:p.C1020R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	59718084	12A2p6	cell line	sgMsh2	59718084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	77	0	0	NA	exonic	Spata31d1b	synonymous SNV	Spata31d1b:NM_001167593:exon4:c.A3045G:p.P1015P	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9982584	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr13	59718988	12A2p6	cell line	sgMsh2	59718988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	49	0	0	NA	exonic	Spata31d1b	nonsynonymous SNV	Spata31d1b:NM_001167593:exon4:c.T3949C:p.C1317R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9917177	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	59727549	12A2p6	cell line	sgMsh2	59727549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	138	0	0	NA	exonic	Spata31d1d	nonsynonymous SNV	Spata31d1d:NM_177711:exon4:c.A2171G:p.Q724R	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999424	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	60748254	12A2p6	cell line	sgMsh2	60748254	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	60	0	0	NA	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon20:c.C2155T:p.R719C,Dapk1:NM_029653:exon20:c.C2155T:p.R719C,Dapk1:NM_134062:exon20:c.C2155T:p.R719C"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9955059	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	60801380	12A2p6	cell line	sgMsh2	60801380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	176	0	0	NA	exonic	Ctsll3	synonymous SNV	Ctsll3:NM_027344:exon2:c.A36G:p.L12L	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999931	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr13	60935412	12A2p6	cell line	sgMsh2	60935412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	164	0	0	NA	exonic	Ctla2a	nonsynonymous SNV	"Ctla2a:NM_001145799:exon4:c.T251C:p.L84P,Ctla2a:NM_007796:exon4:c.T323C:p.L108P"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999866	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	60940209	12A2p6	cell line	sgMsh2	60940209	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	181	0	0	NA	exonic	Tpbpa	synonymous SNV	Tpbpa:NM_009411:exon3:c.T162C:p.S54S	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999948	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr13	61002408	12A2p6	cell line	sgMsh2	61002408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	220	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon6:c.A779G:p.N260S,Ctsj:NM_012007:exon6:c.A776G:p.N259S"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	61003080	12A2p6	cell line	sgMsh2	61003080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	117	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.T565C:p.Y189H,Ctsj:NM_012007:exon5:c.T562C:p.Y188H"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998137	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	61003149	12A2p6	cell line	sgMsh2	61003149	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	152	0	0	NA	exonic	Ctsj	nonsynonymous SNV	"Ctsj:NM_001356291:exon5:c.C496A:p.L166I,Ctsj:NM_012007:exon5:c.C493A:p.L165I"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	64174125	12A2p6	cell line	sgMsh2	64174125	T	C	SNV	Mutect2;Strelka2	2	0.164	229	0	0	NA	exonic	Habp4	nonsynonymous SNV	Habp4:NM_019986:exon3:c.T575C:p.L192P	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.766306415	2	0.8395689	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	64793242	12A2p6	cell line	sgMsh2	64793242	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	270	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon6:c.A923G:p.D308G	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9998119	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	65036110	12A2p6	cell line	sgMsh2	65036110	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	135	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1465G:p.I489V	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	65036189	12A2p6	cell line	sgMsh2	65036189	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	124	0	0	NA	exonic	Spata31d1c	nonsynonymous SNV	Spata31d1c:NM_001083890:exon4:c.A1544G:p.N515S	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998741	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	65284942	12A2p6	cell line	sgMsh2	65284942	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	131	0	0	NA	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon4:c.A245C:p.N82T	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999149	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	65296618	12A2p6	cell line	sgMsh2	65296618	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	83	0	0	NA	exonic	Zfp369	nonsynonymous SNV	Zfp369:NM_178364:exon8:c.A1574C:p.E525A	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9848282	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	66956472	12A2p6	cell line	sgMsh2	66956472	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	329	0	0	NA	exonic	Ptdss1	nonsynonymous SNV	Ptdss1:NM_008959:exon4:c.A407G:p.N136S	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	2.32E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	68584051	12A2p6	cell line	sgMsh2	68584051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	88	0	0	NA	exonic	Fastkd3	nonsynonymous SNV	"Fastkd3:NM_001330423:exon2:c.C490T:p.L164F,Fastkd3:NM_027123:exon2:c.C490T:p.L164F"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990578	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	68584627	12A2p6	cell line	sgMsh2	68584627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	85	0	0	NA	exonic	Fastkd3	synonymous SNV	"Fastkd3:NM_001330423:exon2:c.T1066C:p.L356L,Fastkd3:NM_027123:exon2:c.T1066C:p.L356L"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9938299	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr13	70602846	12A2p6	cell line	sgMsh2	70602846	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	39	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5120A:p.S1707N	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	70738592	12A2p6	cell line	sgMsh2	70738592	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	76	0	0	NA	exonic	Adamts16	synonymous SNV	Adamts16:NM_172053:exon20:c.T3078C:p.T1026T	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9981584	CAG	synonymous	GCAG	8	GCAGGCAG	NA
M7_p20	chr13	70772036	12A2p6	cell line	sgMsh2	70772036	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.102	54	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.G1964A:p.S655N	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.476605209	2	0.9226919	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	70779659	12A2p6	cell line	sgMsh2	70779659	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	55	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon10:c.T1460G:p.I487R	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9438008	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	73686143	12A2p6	cell line	sgMsh2	73686143	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	187	0	0	NA	exonic	Slc6a19	synonymous SNV	"Slc6a19:NM_001359603:exon6:c.A654G:p.T218T,Slc6a19:NM_028878:exon7:c.A939G:p.T313T"	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.191576604	3	1.00E-09	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr13	73927936	12A2p6	cell line	sgMsh2	73927936	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	203	0	0	NA	exonic	Trip13	stopgain	Trip13:NM_027182:exon6:c.A583T:p.K195X	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9987262	TTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr13	73950197	12A2p6	cell line	sgMsh2	73950197	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	99	0	0	NA	exonic	Brd9	nonsynonymous SNV	"Brd9:NM_001024508:exon11:c.T1261C:p.C421R,Brd9:NM_001308041:exon11:c.T1258C:p.C420R,Brd9:NM_001378947:exon11:c.T1321C:p.C441R,Brd9:NM_001378948:exon11:c.T640C:p.C214R"	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	76202115	12A2p6	cell line	sgMsh2	76202115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	0	0	NA	exonic	Fam81b	nonsynonymous SNV	Fam81b:NM_001370926:exon10:c.T1130C:p.L377P	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	76825249	12A2p6	cell line	sgMsh2	76825249	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	176	0	0	NA	exonic	Mctp1	nonsynonymous SNV	"Mctp1:NM_001377108:exon13:c.A1379C:p.Q460P,Mctp1:NM_030174:exon13:c.A2039C:p.Q680P"	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999931	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	77051181	12A2p6	cell line	sgMsh2	77051181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	42	0	0	NA	exonic	Slf1	nonsynonymous SNV	Slf1:NM_134071:exon16:c.A2080G:p.T694A	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	77323668	12A2p6	cell line	sgMsh2	77323668	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	169	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon16:c.A3191T:p.N1064I	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999898	AAT	nonsynonymous	AAAGC	12	AAAGCAAAGCAA	NA
M7_p20	chr13	77327914	12A2p6	cell line	sgMsh2	77327914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	125	0	0	NA	exonic	2210408I21Rik	nonsynonymous SNV	2210408I21Rik:NM_001145676:exon17:c.C3341T:p.A1114V	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.831722816	1	0.9274069	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	81440140	12A2p6	cell line	sgMsh2	81440140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	147	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon66:c.A13326G:p.P4442P	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999652	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr13	81475027	12A2p6	cell line	sgMsh2	81475027	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	167	0	0	NA	exonic	Adgrv1	stopgain	Adgrv1:NM_054053:exon55:c.C11476T:p.Q3826X	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999886	TGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	83575685	12A2p6	cell line	sgMsh2	83575685	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	225	0	0	NA	exonic	Mef2c	frameshift deletion	"Mef2c:NM_001347566:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347567:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347568:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347569:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347573:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347574:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347575:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347576:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347577:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347578:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347579:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347580:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001347581:exon2:c.9delA:p.K5Rfs*6,Mef2c:NM_001170537:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347564:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347571:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_001347572:exon3:c.9delA:p.K5Rfs*6,Mef2c:NM_025282:exon3:c.9delA:p.K5Rfs*6"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr13	84294848	12A2p6	cell line	sgMsh2	84294848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	84	0	0	NA	exonic	Tmem161b	nonsynonymous SNV	"Tmem161b:NM_001361908:exon11:c.C1051T:p.L351F,Tmem161b:NM_001361909:exon11:c.C886T:p.L296F,Tmem161b:NM_001361911:exon12:c.C886T:p.L296F,Tmem161b:NM_175187:exon12:c.C1432T:p.L478F"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	89704467	12A2p6	cell line	sgMsh2	89704467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	199	0	0	NA	exonic	Vcan	synonymous SNV	"Vcan:NM_001081249:exon7:c.A2373G:p.L791L,Vcan:NM_001134474:exon7:c.A2373G:p.L791L"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999981	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr13	91886406	12A2p6	cell line	sgMsh2	91886406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	100	0	0	NA	exonic	Rasgrf2	nonsynonymous SNV	Rasgrf2:NM_009027:exon22:c.A2994T:p.E998D	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	92574979	12A2p6	cell line	sgMsh2	92574979	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	92	0	0	NA	exonic	Spz1	nonsynonymous SNV	Spz1:NM_030237:exon1:c.A988G:p.R330G	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8681264	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	93092203	12A2p6	cell line	sgMsh2	93092203	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	149	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.A6376C:p.R2126R	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9874072	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr13	93175552	12A2p6	cell line	sgMsh2	93175552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	108	0	0	NA	exonic	Tent2	synonymous SNV	"Tent2:NM_001361536:exon6:c.T639C:p.D213D,Tent2:NM_001361537:exon6:c.T639C:p.D213D,Tent2:NM_133905:exon6:c.T639C:p.D213D"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996919	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr13	93175597	12A2p6	cell line	sgMsh2	93175597	A	-	Deletion	Mutect2;Vardict	2	0.154	74	0	0	NA	exonic	Tent2	frameshift deletion	"Tent2:NM_001361536:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_001361537:exon6:c.594delT:p.L199Sfs*5,Tent2:NM_133905:exon6:c.594delT:p.L199Sfs*5"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.719580414	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr13	93346580	12A2p6	cell line	sgMsh2	93346580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	153	0	0	NA	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon3:c.T174C:p.N58N,Homer1:NM_001347598:exon3:c.T174C:p.N58N,Homer1:NM_011982:exon3:c.T174C:p.N58N,Homer1:NM_147176:exon3:c.T174C:p.N58N,Homer1:NM_152134:exon3:c.T222C:p.N74N"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9997737	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr13	93349270	12A2p6	cell line	sgMsh2	93349270	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	160	0	0	NA	exonic	Homer1	synonymous SNV	"Homer1:NM_001284189:exon4:c.G360A:p.K120K,Homer1:NM_001347598:exon4:c.G360A:p.K120K,Homer1:NM_011982:exon4:c.G360A:p.K120K,Homer1:NM_147176:exon4:c.G360A:p.K120K,Homer1:NM_152134:exon4:c.G408A:p.K136K"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999576	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr13	93459675	12A2p6	cell line	sgMsh2	93459675	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	185	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon4:c.T1445C:p.M482T	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	CAT	nonsynonymous	TCA	8	TCATCATC	NA
M7_p20	chr13	93617543	12A2p6	cell line	sgMsh2	93617543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	191	0	0	NA	exonic	Bhmt	nonsynonymous SNV	Bhmt:NM_016668:exon8:c.A1157G:p.K386R	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999532	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	95514004	12A2p6	cell line	sgMsh2	95514004	G	A	SNV	Mutect2;Strelka2	2	0.298	82	0	0	NA	exonic	F2rl1	synonymous SNV	F2rl1:NM_007974:exon2:c.C369T:p.D123D	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	GGT	synonymous	NA	NA	NA	NA
M7_p20	chr13	97175602	12A2p6	cell line	sgMsh2	97175602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	300	0	0	NA	exonic	Gfm2	synonymous SNV	"Gfm2:NM_001271464:exon20:c.A2124G:p.G708G,Gfm2:NM_001271463:exon21:c.A2205G:p.G735G,Gfm2:NM_001271465:exon21:c.A2199G:p.G733G,Gfm2:NM_177266:exon21:c.A2205G:p.G735G"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	7.69E-09	GAT	synonymous	NA	NA	NA	NA
M7_p20	chr13	99434813	12A2p6	cell line	sgMsh2	99434813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	205	0	0	NA	exonic	Map1b	nonsynonymous SNV	Map1b:NM_008634:exon5:c.A1399G:p.T467A	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999986	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	100023682	12A2p6	cell line	sgMsh2	100023682	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	100	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon38:c.A7190G:p.D2397G	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	100059643	12A2p6	cell line	sgMsh2	100059643	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	126	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon18:c.C3610T:p.P1204S	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998874	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	100242802	12A2p6	cell line	sgMsh2	100242802	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	354	0	0	NA	exonic	Naip5	synonymous SNV	Naip5:NM_010870:exon4:c.C729T:p.Y243Y	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	1.33E-09	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr13	100506310	12A2p6	cell line	sgMsh2	100506310	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	207	0	0	NA	exonic	Ocln	synonymous SNV	"Ocln:NM_001360539:exon5:c.T681C:p.P227P,Ocln:NM_001360536:exon7:c.T1263C:p.P421P,Ocln:NM_001360537:exon7:c.T1263C:p.P421P,Ocln:NM_001360538:exon7:c.T1263C:p.P421P,Ocln:NM_008756:exon7:c.T1263C:p.P421P"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999988	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr13	100684293	12A2p6	cell line	sgMsh2	100684293	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	66	0	0	NA	exonic	Ccdc125	nonsynonymous SNV	"Ccdc125:NM_001168386:exon5:c.A443C:p.N148T,Ccdc125:NM_183115:exon6:c.A521C:p.N174T"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	2	1	1	0.9967828	AAT	nonsynonymous	AAAT	8	AAATAAAT	NA
M7_p20	chr13	100736266	12A2p6	cell line	sgMsh2	100736266	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	184	0	0	NA	exonic	Mrps36	frameshift deletion	"Mrps36:NM_001190264:exon4:c.293delG:p.G98Vfs*27,Mrps36:NM_025369:exon4:c.299delG:p.G100Vfs*27"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.878448817	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr13	102705237	12A2p6	cell line	sgMsh2	102705237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	166	0	0	NA	exonic	Cd180	nonsynonymous SNV	"Cd180:NM_001360519:exon3:c.A214G:p.S72G,Cd180:NM_008533:exon3:c.A790G:p.S264G"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.999988	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	102736450	12A2p6	cell line	sgMsh2	102736450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	38	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.G6409A:p.A2137T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9789753	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	102736962	12A2p6	cell line	sgMsh2	102736962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	137	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon29:c.A5897G:p.K1966R	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9998655	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	102751407	12A2p6	cell line	sgMsh2	102751407	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	219	0	0	NA	exonic	Mast4	nonsynonymous SNV	Mast4:NM_175171:exon25:c.A3493G:p.I1165V	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	103850828	12A2p6	cell line	sgMsh2	103850828	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	58	0	0	NA	exonic	Erbin	nonsynonymous SNV	"Erbin:NM_001005868:exon15:c.C1223A:p.P408H,Erbin:NM_001289473:exon15:c.C1223A:p.P408H,Erbin:NM_001289474:exon15:c.C1223A:p.P408H,Erbin:NM_001289475:exon15:c.C1223A:p.P408H"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9910077	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	104154329	12A2p6	cell line	sgMsh2	104154329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	266	0	0	NA	exonic	Trappc13	synonymous SNV	"Trappc13:NM_001093759:exon7:c.A513G:p.P171P,Trappc13:NM_001093760:exon7:c.A513G:p.P171P,Trappc13:NM_001360778:exon7:c.A513G:p.P171P,Trappc13:NM_025879:exon7:c.A513G:p.P171P"	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	4.58E-08	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr13	104493669	12A2p6	cell line	sgMsh2	104493669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	138	0	0	NA	exonic	Adamts6	nonsynonymous SNV	Adamts6:NM_001081020:exon25:c.A3319G:p.R1107G	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999424	CAG	nonsynonymous	CAGA	8	CAGACAGA	NA
M7_p20	chr13	105444804	12A2p6	cell line	sgMsh2	105444804	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	75	0	0	NA	exonic	Htr1a	nonsynonymous SNV	Htr1a:NM_008308:exon1:c.C551A:p.P184H	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9980527	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	107748230	12A2p6	cell line	sgMsh2	107748230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	181	0	0	NA	exonic	Zswim6	synonymous SNV	Zswim6:NM_145456:exon9:c.A1440G:p.L480L	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.009964802	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr13	109740521	12A2p6	cell line	sgMsh2	109740521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	114	0	0	NA	exonic	Pde4d	nonsynonymous SNV	Pde4d:NM_011056:exon4:c.G407A:p.S136N	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997797	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	110061828	12A2p6	cell line	sgMsh2	110061828	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	13	0	0	NA	exonic	Rab3c	nonsynonymous SNV	"Rab3c:NM_001360099:exon5:c.A665C:p.N222T,Rab3c:NM_023852:exon5:c.A671C:p.N224T"	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9410259	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	111756647	12A2p6	cell line	sgMsh2	111756647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	126	0	0	NA	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon13:c.A2323G:p.T775A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998874	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	112895502	12A2p6	cell line	sgMsh2	112895502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	121	0	0	NA	exonic	Mtrex	nonsynonymous SNV	Mtrex:NM_028151:exon16:c.A1775G:p.H592R	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	114970490	12A2p6	cell line	sgMsh2	114970490	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	197	0	0	NA	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon24:c.T3064A:p.S1022T	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999979	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	116303251	12A2p6	cell line	sgMsh2	116303251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	52	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon4:c.T560C:p.V187A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9527329	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	116305373	12A2p6	cell line	sgMsh2	116305373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	50	0	0	NA	exonic	Isl1	nonsynonymous SNV	Isl1:NM_021459:exon3:c.T323C:p.V108A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr13	118385342	12A2p6	cell line	sgMsh2	118385342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	81	0	0	NA	exonic	Mrps30	synonymous SNV	Mrps30:NM_021556:exon2:c.T621C:p.G207G	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.205340083	NA	1	1	1	0.998607	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr14	7907282	12A2p6	cell line	sgMsh2	7907282	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	63	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon22:c.A3854C:p.N1285T,Flnb:NM_134080:exon22:c.A3854C:p.N1285T"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9961974	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	12344506	12A2p6	cell line	sgMsh2	12344506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	16	0	0	NA	exonic	Fezf2	nonsynonymous SNV	Fezf2:NM_080433:exon2:c.A680G:p.Y227C	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9497451	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	14089403	12A2p6	cell line	sgMsh2	14089403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	89	0	0	NA	exonic	Atxn7	synonymous SNV	Atxn7:NM_139227:exon6:c.G918A:p.K306K	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.999109	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr14	14771278	12A2p6	cell line	sgMsh2	14771278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	194	0	0	NA	exonic	Slc4a7	synonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360515:exon15:c.A1992G:p.T664T,Slc4a7:NM_001360516:exon15:c.A1968G:p.T656T,Slc4a7:NM_001360517:exon15:c.A2007G:p.T669T,Slc4a7:NM_001360520:exon15:c.A1953G:p.T651T,Slc4a7:NM_001360504:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360505:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360506:exon16:c.A2376G:p.T792T,Slc4a7:NM_001360508:exon16:c.A2361G:p.T787T,Slc4a7:NM_001360509:exon16:c.A2337G:p.T779T,Slc4a7:NM_001360510:exon16:c.A2322G:p.T774T,Slc4a7:NM_001360511:exon16:c.A2067G:p.T689T,Slc4a7:NM_001360512:exon16:c.A2052G:p.T684T,Slc4a7:NM_001360513:exon16:c.A2028G:p.T676T,Slc4a7:NM_001360514:exon16:c.A2013G:p.T671T"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999975	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	14771285	12A2p6	cell line	sgMsh2	14771285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	192	0	0	NA	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360515:exon15:c.A1999G:p.S667G,Slc4a7:NM_001360516:exon15:c.A1975G:p.S659G,Slc4a7:NM_001360517:exon15:c.A2014G:p.S672G,Slc4a7:NM_001360520:exon15:c.A1960G:p.S654G,Slc4a7:NM_001360504:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360505:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360506:exon16:c.A2383G:p.S795G,Slc4a7:NM_001360508:exon16:c.A2368G:p.S790G,Slc4a7:NM_001360509:exon16:c.A2344G:p.S782G,Slc4a7:NM_001360510:exon16:c.A2329G:p.S777G,Slc4a7:NM_001360511:exon16:c.A2074G:p.S692G,Slc4a7:NM_001360512:exon16:c.A2059G:p.S687G,Slc4a7:NM_001360513:exon16:c.A2035G:p.S679G,Slc4a7:NM_001360514:exon16:c.A2020G:p.S674G"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999972	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	14774979	12A2p6	cell line	sgMsh2	14774979	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	107	0	0	NA	exonic	Slc4a7	nonsynonymous SNV	"Slc4a7:NM_001033270:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360515:exon18:c.T2393A:p.L798H,Slc4a7:NM_001360516:exon18:c.T2369A:p.L790H,Slc4a7:NM_001360517:exon18:c.T2408A:p.L803H,Slc4a7:NM_001360520:exon18:c.T2354A:p.L785H,Slc4a7:NM_001360504:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360505:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360506:exon19:c.T2777A:p.L926H,Slc4a7:NM_001360508:exon19:c.T2762A:p.L921H,Slc4a7:NM_001360509:exon19:c.T2738A:p.L913H,Slc4a7:NM_001360510:exon19:c.T2723A:p.L908H,Slc4a7:NM_001360511:exon19:c.T2468A:p.L823H,Slc4a7:NM_001360512:exon19:c.T2453A:p.L818H,Slc4a7:NM_001360513:exon19:c.T2429A:p.L810H,Slc4a7:NM_001360514:exon19:c.T2414A:p.L805H"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996742	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	14865652	12A2p6	cell line	sgMsh2	14865652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	234	0	0	NA	exonic	Nek10	nonsynonymous SNV	Nek10:NM_001195229:exon21:c.A1931G:p.Y644C	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999997	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	16423715	12A2p6	cell line	sgMsh2	16423715	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.34	49	0	0	NA	exonic	Top2b	frameshift deletion	Top2b:NM_009409:exon32:c.4276delA:p.S1428Vfs*40	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr14	20409093	12A2p6	cell line	sgMsh2	20409093	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	97	0	0	NA	exonic	Cfap70	nonsynonymous SNV	"Cfap70:NM_001163638:exon18:c.C2033T:p.T678I,Cfap70:NM_001163639:exon18:c.C2069T:p.T690I,Cfap70:NM_029698:exon19:c.C2201T:p.T734I"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994302	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	20714697	12A2p6	cell line	sgMsh2	20714697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	48	0	0	NA	exonic	Zswim8	nonsynonymous SNV	"Zswim8:NM_001252081:exon10:c.A2134G:p.T712A,Zswim8:NM_027996:exon10:c.A2134G:p.T712A,Zswim8:NM_001252082:exon11:c.A2032G:p.T678A"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9912455	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	21660934	12A2p6	cell line	sgMsh2	21660934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	50	0	0	NA	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon13:c.A1948G:p.T650A,Kat6b:NM_017479:exon13:c.A1948G:p.T650A"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9921647	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	21792527	12A2p6	cell line	sgMsh2	21792527	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	153	0	0	NA	exonic	Samd8	nonsynonymous SNV	"Samd8:NM_001359953:exon5:c.A916C:p.T306P,Samd8:NM_001359954:exon5:c.A967C:p.T323P,Samd8:NM_026283:exon5:c.A1105C:p.T369P"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999751	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	23436016	12A2p6	cell line	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.46	41	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr14	27384212	12A2p6	cell line	sgMsh2	27384212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	108	0	0	NA	exonic	Arhgef3	nonsynonymous SNV	"Arhgef3:NM_001289687:exon4:c.A431T:p.K144I,Arhgef3:NM_001289688:exon4:c.A449T:p.K150I,Arhgef3:NM_027871:exon5:c.A452T:p.K151I,Arhgef3:NM_001289686:exon7:c.A512T:p.K171I"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996919	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr14	27481131	12A2p6	cell line	sgMsh2	27481131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	83	0	0	NA	exonic	Tasor	nonsynonymous SNV	Tasor:NM_001114879:exon24:c.A4657G:p.I1553V	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9987542	AAT	nonsynonymous	ATTG	8	ATTGATTG	NA
M7_p20	chr14	30658375	12A2p6	cell line	sgMsh2	30658375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	168	0	0	NA	exonic	Rft1	nonsynonymous SNV	Rft1:NM_177815:exon2:c.G130A:p.V44M	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999892	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	30896617	12A2p6	cell line	sgMsh2	30896617	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	48	0	0	NA	exonic	Itih4	nonsynonymous SNV	"Itih4:NM_001159299:exon16:c.C1984T:p.P662S,Itih4:NM_001289632:exon16:c.C1984T:p.P662S,Itih4:NM_001289633:exon16:c.C1984T:p.P662S,Itih4:NM_018746:exon16:c.C1984T:p.P662S"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	2	1	1	0.9912455	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31015289	12A2p6	cell line	sgMsh2	31015289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	182	0	0	NA	exonic	Gnl3	stopgain	Gnl3:NM_153547:exon7:c.A631T:p.R211X	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999951	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31151199	12A2p6	cell line	sgMsh2	31151199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	179	0	0	NA	exonic	Stab1	synonymous SNV	Stab1:NM_138672:exon30:c.G3243A:p.T1081T	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999942	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr14	31187224	12A2p6	cell line	sgMsh2	31187224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	114	0	0	NA	exonic	Nisch	synonymous SNV	"Nisch:NM_001347583:exon10:c.C1014T:p.H338H,Nisch:NM_022656:exon10:c.C1014T:p.H338H"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997797	GGT	synonymous	NA	NA	NA	NA
M7_p20	chr14	31270161	12A2p6	cell line	sgMsh2	31270161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	104	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon57:c.A8963G:p.N2988S	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996147	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31295595	12A2p6	cell line	sgMsh2	31295595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	125	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon27:c.A4478G:p.D1493G	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998809	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31302344	12A2p6	cell line	sgMsh2	31302344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	51	0	0	NA	exonic	Dnah1	nonsynonymous SNV	Dnah1:NM_001033668:exon17:c.T2777A:p.I926N	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9925877	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31347762	12A2p6	cell line	sgMsh2	31347762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	168	0	0	NA	exonic	Capn7	nonsynonymous SNV	"Capn7:NM_001360187:exon5:c.C410A:p.P137H,Capn7:NM_009796:exon5:c.C542A:p.P181H"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999892	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	31552962	12A2p6	cell line	sgMsh2	31552962	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	23	0	0	NA	exonic	Colq	nonsynonymous SNV	Colq:NM_009937:exon3:c.T248A:p.L83Q	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.965485	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	32180565	12A2p6	cell line	sgMsh2	32180565	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	0	0	NA	exonic	Timm23	nonsynonymous SNV	Timm23:NM_016897:exon7:c.A620C:p.Q207P	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9871049	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	32337491	12A2p6	cell line	sgMsh2	32337491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	212	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon10:c.A1037G:p.N346S	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999991	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	32347610	12A2p6	cell line	sgMsh2	32347610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	46	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon24:c.T3014C:p.F1005S	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9902196	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	33359165	12A2p6	cell line	sgMsh2	33359165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	38	0	0	NA	exonic	Arhgap22	nonsynonymous SNV	Arhgap22:NM_153800:exon6:c.T517C:p.F173L	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9847852	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	33633039	12A2p6	cell line	sgMsh2	33633039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	109	0	0	NA	exonic	Ptpn20	nonsynonymous SNV	Ptpn20:NM_008978:exon10:c.T1070C:p.V357A	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997087	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	36940490	12A2p6	cell line	sgMsh2	36940490	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	180	0	0	NA	exonic	Ccser2	nonsynonymous SNV	"Ccser2:NM_001347502:exon1:c.G736A:p.A246T,Ccser2:NM_027045:exon2:c.G736A:p.A246T"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999945	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	36940587	12A2p6	cell line	sgMsh2	36940587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	125	0	0	NA	exonic	Ccser2	synonymous SNV	"Ccser2:NM_001347502:exon1:c.T639C:p.T213T,Ccser2:NM_027045:exon2:c.T639C:p.T213T"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998809	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	38371303	12A2p6	cell line	sgMsh2	38371303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	132	0	0	NA	exonic	Nrg3	stopgain	"Nrg3:NM_001190187:exon9:c.G1605A:p.W535X,Nrg3:NM_008734:exon9:c.G1608A:p.W536X"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999195	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	39472225	12A2p6	cell line	sgMsh2	39472225	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	16	0	0	NA	exonic	Nrg3	synonymous SNV	"Nrg3:NM_001190187:exon1:c.G576T:p.T192T,Nrg3:NM_001190188:exon1:c.G576T:p.T192T,Nrg3:NM_008734:exon1:c.G576T:p.T192T"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9497451	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr14	40913481	12A2p6	cell line	sgMsh2	40913481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	35	0	0	NA	exonic	Tspan14	nonsynonymous SNV	"Tspan14:NM_001316748:exon6:c.T457C:p.C153R,Tspan14:NM_145928:exon6:c.T457C:p.C153R"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.205340083	NA	1	1	1	0.9820559	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	43676151	12A2p6	cell line	sgMsh2	43676151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	104	0	0	NA	exonic	Gm8165	synonymous SNV	Gm8165:NM_001378716:exon2:c.A252G:p.K84K	14qC1	chr14-41348326-44504568	5.98633704	4.98633704	1	0.9	4.205340083	NA	3	1	1	0.9996147	TTT	synonymous	T	5	TTTTT	NA
M7_p20	chr14	45330896	12A2p6	cell line	sgMsh2	45330896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	122	0	0	NA	exonic	Psmc6	nonsynonymous SNV	Psmc6:NM_025959:exon2:c.A152G:p.Q51R	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998592	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	47241760	12A2p6	cell line	sgMsh2	47241760	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	68	0	0	NA	exonic	Wdhd1	nonsynonymous SNV	"Wdhd1:NM_001360532:exon25:c.A3209T:p.K1070M,Wdhd1:NM_172598:exon25:c.A3098T:p.K1033M"	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9971223	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	72	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9976978	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	47701134	12A2p6	cell line	sgMsh2	47701134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	222	0	0	NA	exonic	Ktn1	nonsynonymous SNV	"Ktn1:NM_001347522:exon19:c.T2282C:p.V761A,Ktn1:NM_008477:exon19:c.T2282C:p.V761A,Ktn1:NM_001293635:exon20:c.T2282C:p.V761A,Ktn1:NM_001347519:exon20:c.T2282C:p.V761A,Ktn1:NM_001347520:exon20:c.T2282C:p.V761A,Ktn1:NM_001347521:exon20:c.T2282C:p.V761A,Ktn1:NM_001347523:exon20:c.T2282C:p.V761A,Ktn1:NM_001347524:exon20:c.T2282C:p.V761A,Ktn1:NM_001347525:exon20:c.T2282C:p.V761A,Ktn1:NM_001347526:exon20:c.T2282C:p.V761A,Ktn1:NM_001347527:exon20:c.T2282C:p.V761A,Ktn1:NM_001347528:exon20:c.T2282C:p.V761A,Ktn1:NM_001379486:exon20:c.T2282C:p.V761A,Ktn1:NM_001379487:exon20:c.T2279C:p.V760A,Ktn1:NM_001379488:exon20:c.T2279C:p.V760A,Ktn1:NM_001379489:exon20:c.T2279C:p.V760A,Ktn1:NM_001379490:exon20:c.T2282C:p.V761A,Ktn1:NM_001379491:exon20:c.T2282C:p.V761A,Ktn1:NM_001379492:exon20:c.T2282C:p.V761A,Ktn1:NM_001379493:exon20:c.T2282C:p.V761A,Ktn1:NM_001379494:exon20:c.T2282C:p.V761A,Ktn1:NM_001379495:exon20:c.T2282C:p.V761A,Ktn1:NM_001293636:exon21:c.T1757C:p.V586A"	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	48168284	12A2p6	cell line	sgMsh2	48168284	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	89	0	0	NA	exonic	Peli2	synonymous SNV	Peli2:NM_033602:exon2:c.A165G:p.K55K	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.999109	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.7	29	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M7_p20	chr14	48256095	12A2p6	cell line	sgMsh2	48256095	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	66	0	0	NA	exonic	Peli2	nonsynonymous SNV	Peli2:NM_033602:exon6:c.A773C:p.D258A	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	2	1	1	0.9967828	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	48658834	12A2p6	cell line	sgMsh2	48658834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	56	0	0	NA	exonic	Otx2	synonymous SNV	"Otx2:NM_001360226:exon3:c.T766C:p.L256L,Otx2:NM_144841:exon3:c.T742C:p.L248L,Otx2:NM_001286483:exon4:c.T742C:p.L248L,Otx2:NM_001360225:exon4:c.T766C:p.L256L,Otx2:NM_001286481:exon5:c.T766C:p.L256L,Otx2:NM_001286482:exon5:c.T742C:p.L248L"	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9943856	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	49074099	12A2p6	cell line	sgMsh2	49074099	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	169	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon2:c.A625C:p.I209L,Ap5m1:NM_144535:exon2:c.A625C:p.I209L"	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999898	GAT	nonsynonymous	ATTTCT	14	ATTTCTATTTCTAT	NA
M7_p20	chr14	50767276	12A2p6	cell line	sgMsh2	50767276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	68	0	0	NA	exonic	Ttc5	nonsynonymous SNV	"Ttc5:NM_001360545:exon8:c.T626G:p.L209W,Ttc5:NM_001080949:exon9:c.T1070G:p.L357W"	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9971223	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	50793705	12A2p6	cell line	sgMsh2	50793705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	87	0	0	NA	exonic	Ccnb1ip1	synonymous SNV	Ccnb1ip1:NM_001111119:exon2:c.T150C:p.A50A	14qC1	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9990037	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	101	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995444	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	52036074	12A2p6	cell line	sgMsh2	52036074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	93	0	0	NA	exonic	Olfr221	synonymous SNV	Olfr221:NM_001001808:exon1:c.T36C:p.F12F	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992875	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	98	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994612	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M7_p20	chr14	52215181	12A2p6	cell line	sgMsh2	52215181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	291	0	0	NA	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon19:c.A3880G:p.I1294V	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	1.21E-08	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	52226039	12A2p6	cell line	sgMsh2	52226039	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	82	0	0	NA	exonic	Chd8	nonsynonymous SNV	Chd8:NM_201637:exon9:c.A2147G:p.E716G	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9986826	TTC	nonsynonymous	TACT	9	TACTTACTT	NA
M7_p20	chr14	52450765	12A2p6	cell line	sgMsh2	52450765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	216	0	0	NA	exonic	Olfr1509	synonymous SNV	Olfr1509:NM_020514:exon1:c.T351C:p.I117I	14qC2	chr14-44505690-52852156	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999993	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr14	54439978	12A2p6	cell line	sgMsh2	54439978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	27	0	0	NA	exonic	Mmp14	nonsynonymous SNV	Mmp14:NM_008608:exon9:c.A1375T:p.I459F	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9722123	AAT	nonsynonymous	GGAA	8	GGAAGGAA	NA
M7_p20	chr14	54513409	12A2p6	cell line	sgMsh2	54513409	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	47	0	0	NA	exonic	Prmt5	nonsynonymous SNV	"Prmt5:NM_001313907:exon6:c.G341A:p.R114H,Prmt5:NM_001313906:exon7:c.G602A:p.R201H,Prmt5:NM_013768:exon7:c.G659A:p.R220H"	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9907467	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	54946434	12A2p6	cell line	sgMsh2	54946434	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	40	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon34:c.A5042C:p.N1681T,Myh6:NM_010856:exon34:c.A5042C:p.N1681T"	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9863733	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	54971506	12A2p6	cell line	sgMsh2	54971506	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.226	43	0	0	NA	exonic	Myh7	synonymous SNV	"Myh7:NM_001361607:exon40:c.G5661A:p.E1887E,Myh7:NM_080728:exon40:c.G5661A:p.E1887E"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9884537	GCT	synonymous	CTC	8	CTCCTCCT	NA
M7_p20	chr14	55065991	12A2p6	cell line	sgMsh2	55065991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	23	0	0	NA	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A4535G:p.Q1512R	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.965485	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	55234674	12A2p6	cell line	sgMsh2	55234674	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	114	0	0	NA	exonic	Dhrs2	synonymous SNV	Dhrs2:NM_027790:exon4:c.T21C:p.P7P	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997797	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr14	55576701	12A2p6	cell line	sgMsh2	55576701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	28	0	0	NA	exonic	Fitm1	nonsynonymous SNV	Fitm1:NM_026808:exon2:c.T653C:p.L218P	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9736839	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	55636269	12A2p6	cell line	sgMsh2	55636269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.359	65	0	0	NA	exonic	Tm9sf1	frameshift deletion	"Tm9sf1:NM_001360063:exon5:c.1771delT:p.S591Pfs*2,Tm9sf1:NM_028780:exon6:c.1771delT:p.S591Pfs*2"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr14	55651469	12A2p6	cell line	sgMsh2	55651469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	61	0	0	NA	exonic	Tssk4	nonsynonymous SNV	"Tssk4:NM_001253888:exon3:c.A451G:p.S151G,Tssk4:NM_001253889:exon3:c.A451G:p.S151G"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9957493	CAG	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr14	55705466	12A2p6	cell line	sgMsh2	55705466	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	57	0	0	NA	exonic	Tgm1	frameshift deletion	"Tgm1:NM_001161714:exon12:c.1916delC:p.P639Qfs*6,Tgm1:NM_001161715:exon12:c.1916delC:p.P639Qfs*6,Tgm1:NM_019984:exon12:c.1916delC:p.P639Qfs*6"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	0.855085817	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7_p20	chr14	56535393	12A2p6	cell line	sgMsh2	56535393	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	142	0	0	NA	exonic	Cenpj	nonsynonymous SNV	Cenpj:NM_001014996:exon10:c.G3189T:p.K1063N	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.999954	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	153	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999751	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	56796690	12A2p6	cell line	sgMsh2	56796690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	163	0	0	NA	exonic	Zmym5	nonsynonymous SNV	"Zmym5:NM_001253752:exon7:c.A1063G:p.M355V,Zmym5:NM_001253753:exon7:c.A1063G:p.M355V,Zmym5:NM_144842:exon7:c.A1063G:p.M355V"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999858	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	56804452	12A2p6	cell line	sgMsh2	56804452	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	98	0	0	NA	exonic	Zmym5	frameshift deletion	"Zmym5:NM_001253752:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_001253753:exon3:c.368delA:p.N123Mfs*17,Zmym5:NM_144842:exon3:c.368delA:p.N123Mfs*17"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr14	56902966	12A2p6	cell line	sgMsh2	56902966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	137	0	0	NA	exonic	Zmym2	synonymous SNV	"Zmym2:NM_001360643:exon3:c.A261G:p.S87S,Zmym2:NM_029498:exon3:c.A261G:p.S87S,Zmym2:NM_177627:exon3:c.A261G:p.S87S"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999391	CAA	synonymous	A	5	AAAAA	NA
M7_p20	chr14	56959772	12A2p6	cell line	sgMsh2	56959772	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	147	0	0	NA	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon25:c.T3996A:p.S1332R,Zmym2:NM_029498:exon25:c.T3996A:p.S1332R"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999652	GTT	nonsynonymous	GTTCTA	12	GTTCTAGTTCTA	NA
M7_p20	chr14	59413492	12A2p6	cell line	sgMsh2	59413492	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	126	0	0	NA	exonic	Gm45935;Setdb2	synonymous SNV	"Setdb2:NM_001320721:exon8:c.A1275G:p.K425K,Setdb2:NM_001320720:exon9:c.A1341G:p.K447K,Gm45935:NM_001320725:exon9:c.A1341G:p.K447K"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998874	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr14	63798341	12A2p6	cell line	sgMsh2	63798341	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	33	0	0	NA	exonic	Xkr6	frameshift deletion	Xkr6:NM_173393:exon2:c.890delC:p.Q299Nfs*7	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7_p20	chr14	65819985	12A2p6	cell line	sgMsh2	65819985	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	147	0	0	NA	exonic	Esco2	nonsynonymous SNV	Esco2:NM_028039:exon11:c.T1760C:p.V587A	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999652	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	73	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9978227	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	66143923	12A2p6	cell line	sgMsh2	66143923	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	213	0	0	NA	exonic	Chrna2	synonymous SNV	Chrna2:NM_144803:exon4:c.T228C:p.D76D	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999991	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr14	66297304	12A2p6	cell line	sgMsh2	66297304	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.701	11	0	0	NA	exonic	Trim35	nonsynonymous SNV	Trim35:NM_029979:exon1:c.G235A:p.A79T	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	2	1	1	0.9343634	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	67832250	12A2p6	cell line	sgMsh2	67832250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	195	0	0	NA	exonic	Dock5	synonymous SNV	Dock5:NM_177780:exon11:c.T1017C:p.D339D	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999976	CAT	synonymous	TCA	8	TCATCATC	NA
M7_p20	chr14	70421637	12A2p6	cell line	sgMsh2	70421637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.565	37	0	0	NA	exonic	Piwil2	synonymous SNV	"Piwil2:NM_001364321:exon5:c.T651C:p.S217S,Piwil2:NM_021308:exon5:c.T438C:p.S146S"	14qD2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	2	1	1	0.9839242	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr14	70478088	12A2p6	cell line	sgMsh2	70478088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	80	0	0	NA	exonic	Bmp1	nonsynonymous SNV	"Bmp1:NM_009755:exon19:c.T2606C:p.V869A,Bmp1:NM_001360021:exon20:c.T2606C:p.V869A"	14qD2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.998527	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	70566157	12A2p6	cell line	sgMsh2	70566157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	43	0	0	NA	exonic	Hr	nonsynonymous SNV	"Hr:NM_001379479:exon10:c.A2317G:p.M773V,Hr:NM_021877:exon11:c.A2317G:p.M773V"	14qD2	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	2	1	1	0.9884537	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	75242373	12A2p6	cell line	sgMsh2	75242373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	91	0	0	NA	exonic	Cpb2	stopgain	Cpb2:NM_019775:exon1:c.G19T:p.G7X	14qD3	chr14-53336808-75777336	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992032	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	79580479	12A2p6	cell line	sgMsh2	79580479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	141	0	0	NA	exonic	Elf1	synonymous SNV	"Elf1:NM_001286412:exon8:c.T1437C:p.S479S,Elf1:NM_001286411:exon9:c.T1548C:p.S516S,Elf1:NM_007920:exon9:c.T1548C:p.S516S"	14qD3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	0.672854413	2	0.9865794	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr14	79661991	12A2p6	cell line	sgMsh2	79661991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	99	0	0	NA	exonic	Cnmd	synonymous SNV	"Cnmd:NM_001310655:exon1:c.A21G:p.K7K,Cnmd:NM_010701:exon1:c.A21G:p.K7K"	14qD3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994905	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr14	84446928	12A2p6	cell line	sgMsh2	84446928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	124	0	0	NA	exonic	Pcdh17	synonymous SNV	Pcdh17:NM_001013753:exon1:c.A834G:p.E278E	14qD3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	2	1	1	0.9998741	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	84447017	12A2p6	cell line	sgMsh2	84447017	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	108	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G923A:p.G308D	14qD3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	2	1	1	0.9996919	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	84448442	12A2p6	cell line	sgMsh2	84448442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	44	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.T2348C:p.V783A	14qD3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9890748	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	87472219	12A2p6	cell line	sgMsh2	87472219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	95	0	0	NA	exonic	Tdrd3	synonymous SNV	"Tdrd3:NM_001253755:exon4:c.T336C:p.S112S,Tdrd3:NM_172605:exon4:c.T336C:p.S112S"	14qE1	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9993628	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr14	101458136	12A2p6	cell line	sgMsh2	101458136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	101	0	0	NA	exonic	Tbc1d4	synonymous SNV	Tbc1d4:NM_001081278:exon14:c.T2676G:p.P892P	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995444	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	103177262	12A2p6	cell line	sgMsh2	103177262	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.406	163	0	0	NA	exonic	Mycbp2	frameshift deletion	Mycbp2:NM_207215:exon53:c.7713delT:p.Q2573Rfs*13	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr14	103248510	12A2p6	cell line	sgMsh2	103248510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	76	0	0	NA	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon22:c.T3114C:p.A1038A	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9981584	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr14	104479274	12A2p6	cell line	sgMsh2	104479274	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	55	0	0	NA	exonic	Obi1	synonymous SNV	Obi1:NM_026047:exon6:c.T1662G:p.G554G	14qE2.3	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	2	1	1	0.9940646	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr14	115552293	12A2p6	cell line	sgMsh2	115552293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	108	0	0	NA	exonic	Gpc5	synonymous SNV	Gpc5:NM_175500:exon6:c.T1359C:p.P453P	14qE4	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996919	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr14	120022532	12A2p6	cell line	sgMsh2	120022532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	118	0	0	NA	exonic	Oxgr1	nonsynonymous SNV	Oxgr1:NM_001001490:exon4:c.T262C:p.F88L	14qE4	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998239	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	121277034	12A2p6	cell line	sgMsh2	121277034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	0	0	NA	exonic	Farp1	nonsynonymous SNV	Farp1:NM_134082:exon24:c.T2774C:p.V925A	14qE5	chr14-75846995-123291781	3	2	1	0.9	4.205340083	NA	1	1	1	0.9884537	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr14	123293438	12A2p6	cell line	sgMsh2	123293438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	381	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon37:c.A4187G:p.H1396R	14qE5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	5176888	12A2p6	cell line	sgMsh2	5176888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	207	0	0	NA	exonic	Prkaa1	nonsynonymous SNV	"Prkaa1:NM_001355640:exon6:c.T792G:p.H264Q,Prkaa1:NM_001013367:exon7:c.T1224G:p.H408Q"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999988	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	6827115	12A2p6	cell line	sgMsh2	6827115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	144	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon11:c.T1550C:p.M517T,Osmr:NM_011019:exon11:c.T1550C:p.M517T"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	7185572	12A2p6	cell line	sgMsh2	7185572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	108	0	0	NA	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.T2159C:p.I720T,Lifr:NM_013584:exon16:c.T2159C:p.I720T"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996919	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	7303970	12A2p6	cell line	sgMsh2	7303970	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	181	0	0	NA	exonic	Egflam	nonsynonymous SNV	"Egflam:NM_001289496:exon5:c.A500G:p.N167S,Egflam:NM_001289498:exon5:c.A55G:p.M19V,Egflam:NM_178748:exon5:c.A500G:p.N167S"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.841068017	1	0.9642349	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	8042785	12A2p6	cell line	sgMsh2	8042785	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	97	0	0	NA	exonic	Wdr70	synonymous SNV	Wdr70:NM_001081402:exon7:c.C621T:p.Y207Y	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr15	8176258	12A2p6	cell line	sgMsh2	8176258	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	136	0	0	NA	exonic	Cplane1	synonymous SNV	Cplane1:NM_001162906:exon6:c.T477C:p.G159G	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999356	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr15	8228693	12A2p6	cell line	sgMsh2	8228693	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	44	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon34:c.C6422T:p.P2141L	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9890748	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	8351084	12A2p6	cell line	sgMsh2	8351084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	48	0	0	NA	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon10:c.A2223G:p.E741E,Nipbl:NM_201232:exon10:c.A2223G:p.E741E"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9912455	CTT	synonymous	GGCC	8	GGCCGGCC	NA
M7_p20	chr15	8650879	12A2p6	cell line	sgMsh2	8650879	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	197	0	0	NA	exonic	Slc1a3	nonsynonymous SNV	Slc1a3:NM_148938:exon4:c.C494T:p.T165I	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999979	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	10492812	12A2p6	cell line	sgMsh2	10492812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	334	0	0	NA	exonic	Rad1	nonsynonymous SNV	"Rad1:NM_001289447:exon5:c.A614G:p.K205R,Rad1:NM_001289448:exon5:c.A614G:p.K205R,Rad1:NM_011232:exon5:c.A614G:p.K205R"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	2.00E-09	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	10988924	12A2p6	cell line	sgMsh2	10988924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	105	0	0	NA	exonic	Amacr	nonsynonymous SNV	Amacr:NM_008537:exon4:c.T715C:p.F239L	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996357	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	110	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997245	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	12339738	12A2p6	cell line	sgMsh2	12339738	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	180	0	0	NA	exonic	Golph3	frameshift deletion	Golph3:NM_025673:exon2:c.336delA:p.S114Vfs*2	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr15	12373410	12A2p6	cell line	sgMsh2	12373410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	109	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon21:c.A6638G:p.K2213R	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	12374447	12A2p6	cell line	sgMsh2	12374447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	59	0	0	NA	exonic	Pdzd2	synonymous SNV	Pdzd2:NM_001081064:exon21:c.A5601G:p.S1867S	15qA1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9614905	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	25701571	12A2p6	cell line	sgMsh2	25701571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	178	0	0	NA	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon3:c.T130A:p.Y44N	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999939	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	25714110	12A2p6	cell line	sgMsh2	25714110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	103	0	0	NA	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon4:c.T361C:p.Y121H	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.822377616	1	0.8968026	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	25742429	12A2p6	cell line	sgMsh2	25742429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	110	0	0	NA	exonic	Myo10	nonsynonymous SNV	Myo10:NM_019472:exon18:c.A1828G:p.T610A	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997245	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	27774156	12A2p6	cell line	sgMsh2	27774156	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.115	43	0	0	NA	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon35:c.A5221G:p.S1741G	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.537349011	2	0.833511	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	27833070	12A2p6	cell line	sgMsh2	27833070	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	54	0	0	NA	exonic	Trio	synonymous SNV	Trio:NM_001081302:exon22:c.A3657G:p.K1219K	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.467260009	2	0.9074525	ATT	synonymous	T	5	TTTTT	NA
M7_p20	chr15	28326571	12A2p6	cell line	sgMsh2	28326571	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	95	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon36:c.T5925C:p.P1975P	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993628	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	28367729	12A2p6	cell line	sgMsh2	28367729	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	62	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon50:c.G8259A:p.S2753S	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr15	28378421	12A2p6	cell line	sgMsh2	28378421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	164	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon53:c.T8902C:p.F2968L	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999866	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M7_p20	chr15	28411635	12A2p6	cell line	sgMsh2	28411635	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.22	77	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon65:c.G11149A:p.V3717M	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9982584	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	28445079	12A2p6	cell line	sgMsh2	28445079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	188	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon72:c.T12360C:p.H4120H	15qB1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.756961215	2	0.8226596	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr15	30775195	12A2p6	cell line	sgMsh2	30775195	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	exonic	Ctnnd2	nonsynonymous SNV	"Ctnnd2:NM_001355502:exon10:c.A1713T:p.Q571H,Ctnnd2:NM_008729:exon10:c.A1713T:p.Q571H"	15qB2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.998222	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	30905701	12A2p6	cell line	sgMsh2	30905701	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.324	74	0	0	NA	exonic	Ctnnd2	frameshift deletion	"Ctnnd2:NM_001355502:exon15:c.2493delA:p.I834Sfs*8,Ctnnd2:NM_008729:exon15:c.2493delA:p.I834Sfs*8"	15qB2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr15	31616962	12A2p6	cell line	sgMsh2	31616962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	48	0	0	NA	exonic	Atpsckmt	nonsynonymous SNV	"Atpsckmt:NM_026546:exon5:c.A572G:p.D191G,Atpsckmt:NM_001356313:exon6:c.A338G:p.D113G"	15qB2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9772448	GAC	nonsynonymous	ACCAC	10	ACCACACCAC	NA
M7_p20	chr15	33028073	12A2p6	cell line	sgMsh2	33028073	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	122	0	0	NA	exonic	Sdc2	synonymous SNV	Sdc2:NM_008304:exon4:c.A336G:p.E112E	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	247	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M7_p20	chr15	34839911	12A2p6	cell line	sgMsh2	34839911	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	167	0	0	NA	exonic	Kcns2	synonymous SNV	"Kcns2:NM_001271704:exon2:c.T1419C:p.D473D,Kcns2:NM_181317:exon2:c.T1419C:p.D473D"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr15	35372084	12A2p6	cell line	sgMsh2	35372084	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	179	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon2:c.T124G:p.L42V	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999942	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	35378909	12A2p6	cell line	sgMsh2	35378909	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	97	0	0	NA	exonic	Vps13b	frameshift deletion	Vps13b:NM_177151:exon3:c.168delT:p.L58fs*0	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr15	35770656	12A2p6	cell line	sgMsh2	35770656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	105	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon36:c.A6244G:p.T2082A	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9996349	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	35869439	12A2p6	cell line	sgMsh2	35869439	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	91	0	0	NA	exonic	Vps13b	synonymous SNV	Vps13b:NM_177151:exon44:c.A8088G:p.K2696K	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.99909	AAC	synonymous	A	5	AAAAA	NA
M7_p20	chr15	36245599	12A2p6	cell line	sgMsh2	36245599	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	87	0	0	NA	exonic	Rnf19a	nonsynonymous SNV	Rnf19a:NM_013923:exon8:c.A1499G:p.N500S	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990037	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	38002574	12A2p6	cell line	sgMsh2	38002574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	186	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon33:c.T4332C:p.A1444A,Ubr5:NM_001112721:exon33:c.T4314C:p.A1438A"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	38037822	12A2p6	cell line	sgMsh2	38037822	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	139	0	0	NA	exonic	Ubr5	synonymous SNV	"Ubr5:NM_001081359:exon9:c.T1092C:p.P364P,Ubr5:NM_001112721:exon9:c.T1074C:p.P358P"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9901181	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	38037973	12A2p6	cell line	sgMsh2	38037973	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	38	0	0	NA	exonic	Ubr5	nonsynonymous SNV	"Ubr5:NM_001081359:exon9:c.T941C:p.V314A,Ubr5:NM_001112721:exon9:c.T923C:p.V308A"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8663616	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	38297789	12A2p6	cell line	sgMsh2	38297789	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	67	0	0	NA	exonic	Klf10	nonsynonymous SNV	"Klf10:NM_001289471:exon2:c.G100A:p.E34K,Klf10:NM_001357677:exon2:c.G79A:p.E27K,Klf10:NM_013692:exon2:c.G100A:p.E34K"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	41101450	12A2p6	cell line	sgMsh2	41101450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	100	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A1171G:p.K391E,Zfpm2:NM_011766:exon8:c.A1330G:p.K444E"	15qB3.1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr15	43263297	12A2p6	cell line	sgMsh2	43263297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	215	0	0	NA	exonic	Eif3e	nonsynonymous SNV	Eif3e:NM_008388:exon8:c.T761C:p.L254P	15qB3.2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.827050216	1	0.9308256	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	43511750	12A2p6	cell line	sgMsh2	43511750	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	260	0	0	NA	exonic	Emc2	synonymous SNV	Emc2:NM_025736:exon9:c.T642C:p.Y214Y	15qB3.2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr15	44400220	12A2p6	cell line	sgMsh2	44400220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	170	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon6:c.T822C:p.P274P,Nudcd1:NM_026149:exon6:c.T825C:p.P275P"	15qB3.2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9978892	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	44528272	12A2p6	cell line	sgMsh2	44528272	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	171	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon37:c.A4733G:p.N1578S	15qB3.2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999909	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	44547035	12A2p6	cell line	sgMsh2	44547035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	148	0	0	NA	exonic	Pkhd1l1	nonsynonymous SNV	Pkhd1l1:NM_138674:exon49:c.T7937G:p.I2646S	15qB3.2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.733598215	2	0.8628763	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	47590714	12A2p6	cell line	sgMsh2	47590714	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	74	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon68:c.G10735A:p.G3579R	15qB3.3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	CCA	nonsynonymous	ATCC	10	ATCCATCCAT	NA
M7_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	143	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9992189	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	47698117	12A2p6	cell line	sgMsh2	47698117	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	140	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon43:c.T6795A:p.L2265L	15qB3.3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999485	GAA	synonymous	NA	NA	NA	NA
M7_p20	chr15	47755456	12A2p6	cell line	sgMsh2	47755456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	321	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon34:c.T5535C:p.G1845G	15qB3.3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	3.07E-09	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr15	47976963	12A2p6	cell line	sgMsh2	47976963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	exonic	Csmd3	synonymous SNV	Csmd3:NM_001081391:exon18:c.A2907G:p.Q969Q	15qB3.3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999565	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr15	54598538	12A2p6	cell line	sgMsh2	54598538	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	174	0	0	NA	exonic	Mal2	nonsynonymous SNV	Mal2:NM_178920:exon3:c.A428G:p.N143S	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999923	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	56668003	12A2p6	cell line	sgMsh2	56668003	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	260	0	0	NA	exonic	Has2	nonsynonymous SNV	Has2:NM_008216:exon4:c.T1315C:p.Y439H	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	58889378	12A2p6	cell line	sgMsh2	58889378	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	29	0	0	NA	exonic	Rnf139	nonsynonymous SNV	Rnf139:NM_175226:exon1:c.T65G:p.L22R	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9750797	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	60823380	12A2p6	cell line	sgMsh2	60823380	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	35	0	0	NA	exonic	Lratd2	synonymous SNV	Lratd2:NM_001162926:exon2:c.C516T:p.R172R	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9474465	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr15	60823463	12A2p6	cell line	sgMsh2	60823463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	50	0	0	NA	exonic	Lratd2	nonsynonymous SNV	Lratd2:NM_001162926:exon2:c.T433A:p.L145M	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	63938728	12A2p6	cell line	sgMsh2	63938728	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	185	0	0	NA	exonic	Cyrib	nonsynonymous SNV	"Cyrib:NM_001360035:exon9:c.A649G:p.I217V,Cyrib:NM_001360037:exon9:c.A649G:p.I217V,Cyrib:NM_001360038:exon9:c.A649G:p.I217V,Cyrib:NM_144846:exon9:c.A649G:p.I217V,Cyrib:NM_001360036:exon10:c.A649G:p.I217V"	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.200921804	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	65845945	12A2p6	cell line	sgMsh2	65845945	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	123	0	0	NA	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon9:c.G784A:p.G262R,Efr3a:NM_133766:exon9:c.G892A:p.G298R"	15qD1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9997288	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	66532791	12A2p6	cell line	sgMsh2	66532791	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	256	0	0	NA	exonic	Tmem71	synonymous SNV	Tmem71:NM_172514:exon8:c.A747G:p.L249L	15qD2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr15	66604238	12A2p6	cell line	sgMsh2	66604238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	129	0	0	NA	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon7:c.T719C:p.F240S	15qD2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	68178774	12A2p6	cell line	sgMsh2	68178774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	123	0	0	NA	exonic	Zfat	synonymous SNV	"Zfat:NM_001145888:exon7:c.C2397A:p.G799G,Zfat:NM_198644:exon7:c.C2376A:p.G792G"	15qD2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr15	71452455	12A2p6	cell line	sgMsh2	71452455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	220	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon17:c.T3662C:p.I1221T	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	71952562	12A2p6	cell line	sgMsh2	71952562	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	141	0	0	NA	exonic	Col22a1	synonymous SNV	Col22a1:NM_027174:exon13:c.A1632T:p.P544P	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999513	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	73800224	12A2p6	cell line	sgMsh2	73800224	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.153	72	0	0	NA	exonic	Mroh5	nonsynonymous SNV	"Mroh5:NM_001033365:exon3:c.G64A:p.A22T,Mroh5:NM_001368162:exon3:c.G64A:p.A22T"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.714907814	2	0.5645759	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
M7_p20	chr15	74751320	12A2p6	cell line	sgMsh2	74751320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	91	0	0	NA	exonic	Lynx1	nonsynonymous SNV	Lynx1:NM_011838:exon4:c.T262C:p.Y88H	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	75565666	12A2p6	cell line	sgMsh2	75565666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	60	0	0	NA	exonic	Ly6h	nonsynonymous SNV	"Ly6h:NM_001135688:exon3:c.C101T:p.A34V,Ly6h:NM_001135689:exon3:c.C101T:p.A34V,Ly6h:NM_011837:exon3:c.C164T:p.A55V"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9955059	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	75712300	12A2p6	cell line	sgMsh2	75712300	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.469	46	0	0	NA	exonic	Rhpn1	synonymous SNV	"Rhpn1:NM_001163465:exon11:c.G1275A:p.A425A,Rhpn1:NM_008164:exon11:c.G1275A:p.A425A"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9902196	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr15	75757546	12A2p6	cell line	sgMsh2	75757546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	82	0	0	NA	exonic	Zc3h3	nonsynonymous SNV	Zc3h3:NM_172121:exon10:c.T2471C:p.V824A	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9986826	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	75839591	12A2p6	cell line	sgMsh2	75839591	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	121	0	0	NA	exonic	Zc3h3	synonymous SNV	Zc3h3:NM_172121:exon2:c.T1020C:p.G340G	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr15	75903359	12A2p6	cell line	sgMsh2	75903359	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	50	0	0	NA	exonic	Eef1d	synonymous SNV	Eef1d:NM_029663:exon3:c.G450A:p.P150P	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	GCG	synonymous	GGCTG	10	GGCTGGGCTG	NA
M7_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9976978	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76067353	12A2p6	cell line	sgMsh2	76067353	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	107	0	0	NA	exonic	Scrib	nonsynonymous SNV	"Scrib:NM_001310542:exon4:c.G383A:p.R128H,Scrib:NM_001310543:exon4:c.G383A:p.R128H,Scrib:NM_134089:exon4:c.G383A:p.R128H"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9996735	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76072306	12A2p6	cell line	sgMsh2	76072306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	145	0	0	NA	exonic	Puf60	nonsynonymous SNV	"Puf60:NM_001164600:exon6:c.A350G:p.Y117C,Puf60:NM_001378985:exon6:c.A491G:p.Y164C,Puf60:NM_133691:exon6:c.A494G:p.Y165C,Puf60:NM_001378984:exon7:c.A542G:p.Y181C,Puf60:NM_001378986:exon7:c.A473G:p.Y158C,Puf60:NM_028364:exon7:c.A545G:p.Y182C,Puf60:NM_001356629:exon8:c.A524G:p.Y175C"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999611	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76077616	12A2p6	cell line	sgMsh2	76077616	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	38	0	0	NA	exonic	Puf60	synonymous SNV	"Puf60:NM_001378984:exon2:c.A108G:p.K36K,Puf60:NM_001378985:exon2:c.A108G:p.K36K,Puf60:NM_028364:exon2:c.A111G:p.K37K,Puf60:NM_133691:exon2:c.A111G:p.K37K,Puf60:NM_001356629:exon3:c.A90G:p.K30K,Puf60:NM_001378986:exon3:c.A90G:p.K30K"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	114	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997797	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76108981	12A2p6	cell line	sgMsh2	76108981	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	50	0	0	NA	exonic	Eppk1	synonymous SNV	Eppk1:NM_144848:exon2:c.C3699A:p.G1233G	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	TGC	synonymous	NA	NA	NA	NA
M7_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	131	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.999178	GCG	synonymous	NA	NA	NA	NA
M7_p20	chr15	76175643	12A2p6	cell line	sgMsh2	76175643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.G10246A:p.A3416T,Plec:NM_201385:exon32:c.G10132A:p.A3378T,Plec:NM_201386:exon32:c.G10093A:p.A3365T,Plec:NM_201387:exon32:c.G9688A:p.A3230T,Plec:NM_201388:exon32:c.G9688A:p.A3230T,Plec:NM_201389:exon32:c.G10588A:p.A3530T,Plec:NM_201390:exon32:c.G10063A:p.A3355T,Plec:NM_201391:exon32:c.G10159A:p.A3387T,Plec:NM_201392:exon32:c.G9688A:p.A3230T,Plec:NM_201393:exon32:c.G10180A:p.A3394T,Plec:NM_201394:exon32:c.G10159A:p.A3387T,Plec:NM_001163540:exon33:c.G10603A:p.A3535T,Plec:NM_001163549:exon33:c.G10174A:p.A3392T,Plec:NM_001163542:exon34:c.G10297A:p.A3433T,Plec:NM_001164203:exon34:c.G9688A:p.A3230T"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76268180	12A2p6	cell line	sgMsh2	76268180	A	G	SNV	Mutect2;Strelka2	2	0.25	17	0	0	NA	exonic	Spatc1	synonymous SNV	Spatc1:NM_028852:exon1:c.A9G:p.L3L	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9523583	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr15	76373089	12A2p6	cell line	sgMsh2	76373089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	68	0	0	NA	exonic	Tssk5	nonsynonymous SNV	Tssk5:NM_183099:exon5:c.T673C:p.Y225H	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9971223	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76433556	12A2p6	cell line	sgMsh2	76433556	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	148	0	0	NA	exonic	Mroh1	frameshift deletion	"Mroh1:NM_001162489:exon24:c.2464delC:p.P823Qfs*3,Mroh1:NM_175457:exon26:c.2491delC:p.P832Qfs*2"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr15	76436108	12A2p6	cell line	sgMsh2	76436108	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	121	0	0	NA	exonic	Mroh1	synonymous SNV	"Mroh1:NM_001162489:exon29:c.C3081T:p.S1027S,Mroh1:NM_175457:exon31:c.C3108T:p.S1036S"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	GCA	synonymous	NA	NA	NA	NA
M7_p20	chr15	76599550	12A2p6	cell line	sgMsh2	76599550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	97	0	0	NA	exonic	Cpsf1	nonsynonymous SNV	"Cpsf1:NM_001164173:exon22:c.G2492A:p.R831Q,Cpsf1:NM_001361485:exon22:c.G2039A:p.R680Q,Cpsf1:NM_053193:exon22:c.G2492A:p.R831Q"	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9973485	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	76708547	12A2p6	cell line	sgMsh2	76708547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	101	0	0	NA	exonic	Recql4	nonsynonymous SNV	Recql4:NM_058214:exon6:c.T1222C:p.C408R	15qD3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.9851943	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	77635321	12A2p6	cell line	sgMsh2	77635321	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	147	0	0	NA	exonic	Apol11b	synonymous SNV	Apol11b:NM_001143686:exon4:c.T558C:p.S186S	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999652	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	78781167	12A2p6	cell line	sgMsh2	78781167	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	19	0	0	NA	exonic	Card10	synonymous SNV	Card10:NM_130859:exon14:c.T2085A:p.T695T	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9571948	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	79036041	12A2p6	cell line	sgMsh2	79036041	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	55	0	0	NA	exonic	Gcat	synonymous SNV	"Gcat:NM_001161712:exon6:c.T744C:p.G248G,Gcat:NM_013847:exon6:c.T744C:p.G248G"	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	79089912	12A2p6	cell line	sgMsh2	79089912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	113	0	0	NA	exonic	Eif3l	nonsynonymous SNV	Eif3l:NM_145139:exon11:c.T1526C:p.L509P	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997671	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	79129918	12A2p6	cell line	sgMsh2	79129918	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	28	0	0	NA	exonic	Micall1	nonsynonymous SNV	Micall1:NM_177461:exon10:c.A2012T:p.H671L	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9736839	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	79620739	12A2p6	cell line	sgMsh2	79620739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	65	0	0	NA	exonic	Fam227a	nonsynonymous SNV	Fam227a:NM_029407:exon15:c.A1502C:p.N501T	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9965984	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	79727109	12A2p6	cell line	sgMsh2	79727109	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.214	72	0	0	NA	exonic	Sun2	nonsynonymous SNV	"Sun2:NM_194342:exon14:c.T1667A:p.L556H,Sun2:NM_001205345:exon15:c.T1763A:p.L588H,Sun2:NM_001205346:exon15:c.T1757A:p.L586H"	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9976945	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	80956273	12A2p6	cell line	sgMsh2	80956273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	440	0	0	NA	exonic	Adsl	synonymous SNV	Adsl:NM_009634:exon4:c.T463C:p.L155L	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr15	82037539	12A2p6	cell line	sgMsh2	82037539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	95	0	0	NA	exonic	Xrcc6	synonymous SNV	Xrcc6:NM_010247:exon12:c.T1599C:p.N533N	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993628	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr15	82286498	12A2p6	cell line	sgMsh2	82286498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	97	0	0	NA	exonic	Septin3	nonsynonymous SNV	"Septin3:NM_001368647:exon6:c.A539G:p.D180G,Septin3:NM_001358836:exon7:c.A731G:p.D244G,Septin3:NM_001358837:exon7:c.A731G:p.D244G,Septin3:NM_001368642:exon7:c.A731G:p.D244G,Septin3:NM_001368643:exon7:c.A731G:p.D244G,Septin3:NM_001368644:exon7:c.A692G:p.D231G,Septin3:NM_001368645:exon7:c.A692G:p.D231G,Septin3:NM_001368646:exon7:c.A692G:p.D231G,Septin3:NM_011889:exon7:c.A692G:p.D231G,Septin3:NM_001368784:exon8:c.A2135G:p.D712G,Septin3:NM_001368785:exon8:c.A2135G:p.D712G"	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	82558930	12A2p6	cell line	sgMsh2	82558930	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	239	0	0	NA	exonic	Cyp2d12	nonsynonymous SNV	"Cyp2d12:NM_001355665:exon7:c.C1039T:p.L347F,Cyp2d12:NM_201360:exon8:c.C1192T:p.L398F"	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9999821	CCT	nonsynonymous	TCC	9	TCCTCCTCC	NA
M7_p20	chr15	82616437	12A2p6	cell line	sgMsh2	82616437	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	164	0	0	NA	exonic	Cyp2d34	frameshift deletion	Cyp2d34:NM_145474:exon8:c.1200delC:p.N401Tfs*5	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7_p20	chr15	82617507	12A2p6	cell line	sgMsh2	82617507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	152	0	0	NA	exonic	Cyp2d34	synonymous SNV	Cyp2d34:NM_145474:exon5:c.T801C:p.P267P	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999366	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	82854799	12A2p6	cell line	sgMsh2	82854799	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	187	0	0	NA	exonic	Tcf20	nonsynonymous SNV	"Tcf20:NM_001114140:exon2:c.C2450A:p.P817H,Tcf20:NM_013836:exon2:c.C2450A:p.P817H"	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999963	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	83549321	12A2p6	cell line	sgMsh2	83549321	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	61	0	0	NA	exonic	Mcat	stopgain	Mcat:NM_001030014:exon3:c.A520T:p.K174X	15qE1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.598092812	2	0.8910967	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	83973281	12A2p6	cell line	sgMsh2	83973281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	132	0	0	NA	exonic	Efcab6	nonsynonymous SNV	Efcab6:NM_029946:exon9:c.T916C:p.Y306H	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.705562614	2	0.928303	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	84105443	12A2p6	cell line	sgMsh2	84105443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	31	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	"Sult4a1:NM_001356515:exon1:c.T157C:p.Y53H,Sult4a1:NM_013873:exon1:c.T157C:p.Y53H"	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9776579	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	150	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999706	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	84935251	12A2p6	cell line	sgMsh2	84935251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	137	0	0	NA	exonic	Nup50	nonsynonymous SNV	Nup50:NM_016714:exon5:c.A725G:p.K242R	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999391	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	85230884	12A2p6	cell line	sgMsh2	85230884	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	93	0	0	NA	exonic	Fbln1	synonymous SNV	"Fbln1:NM_001347088:exon6:c.T636C:p.D212D,Fbln1:NM_010180:exon6:c.T636C:p.D212D"	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.752288615	1	0.5350156	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr15	85393384	12A2p6	cell line	sgMsh2	85393384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	295	0	0	NA	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1051C:p.F351L	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	85393457	12A2p6	cell line	sgMsh2	85393457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	287	0	0	NA	exonic	Atxn10	nonsynonymous SNV	Atxn10:NM_016843:exon9:c.T1124C:p.I375T	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999987	ATC	nonsynonymous	TCTCA	12	TCTCATCTCATC	NA
M7_p20	chr15	85816500	12A2p6	cell line	sgMsh2	85816500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	238	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T5234C:p.V1745A	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	85816891	12A2p6	cell line	sgMsh2	85816891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	156	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.T4843C:p.F1615L	15qE2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.999979	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	88914616	12A2p6	cell line	sgMsh2	88914616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	32	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon12:c.C1321T:p.P441S,Ttll8:NM_172818:exon12:c.C1915T:p.P639S"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9788474	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	89100895	12A2p6	cell line	sgMsh2	89100895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	67	0	0	NA	exonic	Tubgcp6	synonymous SNV	Tubgcp6:NM_001163319:exon23:c.T4989C:p.H1663H	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr15	89365257	12A2p6	cell line	sgMsh2	89365259	GAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	57	0	0	NA	exonic	Ncaph2	nonframeshift deletion	"Ncaph2:NM_001115132:exon9:c.763_765del:p.E256del,Ncaph2:NM_001271600:exon9:c.670_672del:p.E225del,Ncaph2:NM_001271601:exon9:c.763_765del:p.E256del"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	AGA	inframe	GAG	8	GAGGAGGA	-3
M7_p20	chr15	89473427	12A2p6	cell line	sgMsh2	89473427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	39	0	0	NA	exonic	Arsa	nonsynonymous SNV	Arsa:NM_009713:exon9:c.A1332G:p.I444M	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.831722816	1	0.09958717	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	89543125	12A2p6	cell line	sgMsh2	89543125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	93	0	0	NA	exonic	Shank3	synonymous SNV	Shank3:NM_021423:exon19:c.T2382C:p.V794V	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	89569857	12A2p6	cell line	sgMsh2	89569857	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	137	0	0	NA	exonic	Acr	synonymous SNV	"Acr:NM_001205049:exon3:c.T396C:p.H132H,Acr:NM_001277245:exon3:c.T228C:p.H76H,Acr:NM_001277246:exon3:c.T228C:p.H76H,Acr:NM_001277247:exon3:c.T270C:p.H90H,Acr:NM_013455:exon3:c.T396C:p.H132H"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999391	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr15	90934520	12A2p6	cell line	sgMsh2	90934520	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	112	0	0	NA	exonic	Kif21a	frameshift deletion	"Kif21a:NM_001109042:exon33:c.4634delA:p.K1545Rfs*34,Kif21a:NM_016705:exon33:c.4652delA:p.K1551Rfs*34,Kif21a:NM_001358050:exon34:c.4742delA:p.K1581Rfs*34,Kif21a:NM_001109041:exon36:c.4817delA:p.K1606Rfs*34,Kif21a:NM_001109040:exon37:c.4949delA:p.K1650Rfs*34"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr15	92255968	12A2p6	cell line	sgMsh2	92255968	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	265	0	0	NA	exonic	Cntn1	nonsynonymous SNV	"Cntn1:NM_001159647:exon13:c.A1501C:p.I501L,Cntn1:NM_001159648:exon13:c.A1501C:p.I501L,Cntn1:NM_007727:exon13:c.A1501C:p.I501L,Cntn1:NM_001358051:exon15:c.A1501C:p.I501L"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	4.84E-08	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	93501215	12A2p6	cell line	sgMsh2	93501215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	123	0	0	NA	exonic	Prickle1	synonymous SNV	"Prickle1:NM_001033217:exon8:c.A1731G:p.K577K,Prickle1:NM_001364846:exon8:c.A1731G:p.K577K"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr15	93503313	12A2p6	cell line	sgMsh2	93503313	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	69	0	0	NA	exonic	Prickle1	nonsynonymous SNV	"Prickle1:NM_001033217:exon7:c.A1289G:p.Q430R,Prickle1:NM_001364846:exon7:c.A1289G:p.Q430R"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9972784	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	94338749	12A2p6	cell line	sgMsh2	94338749	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	84	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon17:c.T2389G:p.S797A,Adamts20:NM_177431:exon17:c.T2389G:p.S797A"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.780324215	1	0.7409682	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	94353613	12A2p6	cell line	sgMsh2	94353613	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	106	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon9:c.T1292C:p.L431P,Adamts20:NM_001164786:exon9:c.T1292C:p.L431P,Adamts20:NM_177431:exon9:c.T1292C:p.L431P"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996555	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	94355362	12A2p6	cell line	sgMsh2	94355362	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	75	0	0	NA	exonic	Adamts20	nonsynonymous SNV	"Adamts20:NM_001164785:exon8:c.T1129A:p.C377S,Adamts20:NM_001164786:exon8:c.T1129A:p.C377S,Adamts20:NM_177431:exon8:c.T1129A:p.C377S"	15qE3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9962763	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	96370823	12A2p6	cell line	sgMsh2	96370823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	229	0	0	NA	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon15:c.A2816G:p.Y939C	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999995	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	96691378	12A2p6	cell line	sgMsh2	96691378	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	159	0	0	NA	exonic	Slc38a2	nonsynonymous SNV	"Slc38a2:NM_001355633:exon13:c.A997G:p.I333V,Slc38a2:NM_175121:exon14:c.A1234G:p.I412V"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.238302605	3	9.58E-09	ATG	nonsynonymous	TGA	8	TGATGATG	NA
M7_p20	chr15	97245313	12A2p6	cell line	sgMsh2	97245313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	220	0	0	NA	exonic	Amigo2	synonymous SNV	"Amigo2:NM_178114:exon1:c.A1227T:p.I409I,Amigo2:NM_001164563:exon2:c.A1227T:p.I409I,Amigo2:NM_001164602:exon2:c.A1227T:p.I409I"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr15	97719565	12A2p6	cell line	sgMsh2	97719565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	170	0	0	NA	exonic	Endou	nonsynonymous SNV	"Endou:NM_008902:exon4:c.A629G:p.N210S,Endou:NM_001168693:exon5:c.A503G:p.N168S"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999904	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	97761220	12A2p6	cell line	sgMsh2	97761220	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	47	0	0	NA	exonic	Rapgef3	stopgain	"Rapgef3:NM_001177810:exon5:c.C390A:p.C130X,Rapgef3:NM_001177811:exon5:c.C390A:p.C130X,Rapgef3:NM_001357630:exon5:c.C390A:p.C130X,Rapgef3:NM_144850:exon5:c.C390A:p.C130X"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9907467	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	98187072	12A2p6	cell line	sgMsh2	98187072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	316	0	0	NA	exonic	Olfr288	nonsynonymous SNV	Olfr288:NM_001011733:exon3:c.A724G:p.R242G	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	3.74E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	98312954	12A2p6	cell line	sgMsh2	98312954	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	186	0	0	NA	exonic	Olfr257;Olfr285	nonsynonymous SNV	"Olfr285:NM_001011778:exon1:c.T595A:p.C199S,Olfr257:NM_207554:exon1:c.T595A:p.C199S"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.191576604	3	1.00E-09	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	98313094	12A2p6	cell line	sgMsh2	98313094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	188	0	0	NA	exonic	Olfr257;Olfr285	nonsynonymous SNV	"Olfr285:NM_001011778:exon1:c.T455C:p.L152P,Olfr257:NM_207554:exon1:c.T455C:p.L152P"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999965	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	98340451	12A2p6	cell line	sgMsh2	98340451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	58	0	0	NA	exonic	Olfr284	synonymous SNV	Olfr284:NM_146281:exon1:c.T489C:p.S163S	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.994971	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr15	98497551	12A2p6	cell line	sgMsh2	98497551	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	81	0	0	NA	exonic	Olfr279	frameshift deletion	Olfr279:NM_001001807:exon1:c.78delC:p.F28Lfs*4	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M7_p20	chr15	98835241	12A2p6	cell line	sgMsh2	98835241	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	69	0	0	NA	exonic	Kmt2d	nonsynonymous SNV	Kmt2d:NM_001033276:exon52:c.A16432T:p.I5478F	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.9972784	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	99426064	12A2p6	cell line	sgMsh2	99426064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	23	0	0	NA	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2557G:p.T853A	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	2	1	1	0.965485	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	99426306	12A2p6	cell line	sgMsh2	99426306	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.166	37	0	0	NA	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon8:c.A2315C:p.K772T	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.8254607	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	99524793	12A2p6	cell line	sgMsh2	99524793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	30	0	0	NA	exonic	Faim2	nonsynonymous SNV	"Faim2:NM_001038658:exon2:c.A122G:p.E41G,Faim2:NM_028224:exon2:c.A122G:p.E41G"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9764031	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	99699089	12A2p6	cell line	sgMsh2	99699089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	122	0	0	NA	exonic	Asic1	nonsynonymous SNV	"Asic1:NM_001289791:exon10:c.T1631C:p.I544T,Asic1:NM_009597:exon12:c.T1532C:p.I511T"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9988368	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	99993387	12A2p6	cell line	sgMsh2	99993387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	167	0	0	NA	exonic	Larp4	nonsynonymous SNV	"Larp4:NM_001024526:exon7:c.A692G:p.N231S,Larp4:NM_001080948:exon7:c.A689G:p.N230S,Larp4:NM_001284521:exon7:c.A515G:p.N172S,Larp4:NM_001284522:exon7:c.A686G:p.N229S,Larp4:NM_001284523:exon7:c.A695G:p.N232S"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	100528446	12A2p6	cell line	sgMsh2	100528446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	280	0	0	NA	exonic	Tfcp2	nonsynonymous SNV	"Tfcp2:NM_001289603:exon3:c.A223G:p.T75A,Tfcp2:NM_001355497:exon3:c.A223G:p.T75A,Tfcp2:NM_033476:exon3:c.A223G:p.T75A"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	2.15E-08	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	100704244	12A2p6	cell line	sgMsh2	100704244	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	42	0	0	NA	exonic	Galnt6	synonymous SNV	"Galnt6:NM_001161767:exon5:c.G681A:p.R227R,Galnt6:NM_001161768:exon5:c.G681A:p.R227R,Galnt6:NM_172451:exon5:c.G681A:p.R227R"	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr15	101274241	12A2p6	cell line	sgMsh2	101274241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	281	0	0	NA	exonic	Nr4a1	synonymous SNV	Nr4a1:NM_010444:exon7:c.T1795C:p.L599L	15qF1	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	2.04E-08	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr15	101460136	12A2p6	cell line	sgMsh2	101460136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	83	0	0	NA	exonic	Krt81;Krt85	nonsynonymous SNV	Krt81:NM_001166157:exon7:c.G1235A:p.G412D	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	101568091	12A2p6	cell line	sgMsh2	101568091	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	99	0	0	NA	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon7:c.A1238G:p.K413R	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	101568342	12A2p6	cell line	sgMsh2	101568342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	181	0	0	NA	exonic	Krt75	nonsynonymous SNV	Krt75:NM_133357:exon6:c.A1111G:p.M371V	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999948	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	101624375	12A2p6	cell line	sgMsh2	101624375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	373	0	0	NA	exonic	Gm5414	synonymous SNV	Gm5414:NM_001003670:exon8:c.A1416G:p.P472P	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	1.11E-09	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr15	101936188	12A2p6	cell line	sgMsh2	101936188	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	310	0	0	NA	exonic	Krt79	nonsynonymous SNV	Krt79:NM_146063:exon4:c.G760A:p.A254T	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	4.83E-09	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	101946932	12A2p6	cell line	sgMsh2	101946932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	193	0	0	NA	exonic	Krt78	nonsynonymous SNV	Krt78:NM_212487:exon9:c.T2443C:p.Y815H	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9993054	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	102156832	12A2p6	cell line	sgMsh2	102156832	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	242	0	0	NA	exonic	Soat2	stopgain	Soat2:NM_146064:exon6:c.T461A:p.L154X	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	102186467	12A2p6	cell line	sgMsh2	102186467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	151	0	0	NA	exonic	Csad	nonsynonymous SNV	"Csad:NM_001359127:exon7:c.T574C:p.Y192H,Csad:NM_144942:exon7:c.T574C:p.Y192H,Csad:NM_001359126:exon10:c.T574C:p.Y192H,Csad:NM_001359128:exon10:c.T574C:p.Y192H"	15qF2	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999722	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	102358373	12A2p6	cell line	sgMsh2	102358373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	48	0	0	NA	exonic	Sp7	nonsynonymous SNV	"Sp7:NM_001348205:exon2:c.T997C:p.F333L,Sp7:NM_130458:exon2:c.T1051C:p.F351L"	15qF3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9912455	AAC	nonsynonymous	CTT	8	CTTCTTCT	NA
M7_p20	chr15	102522909	12A2p6	cell line	sgMsh2	102522909	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	26	0	0	NA	exonic	Tarbp2	nonsynonymous SNV	"Tarbp2:NM_001253795:exon6:c.T526A:p.L176M,Tarbp2:NM_009319:exon8:c.T799A:p.L267M"	15qF3	chr15-3279130-102635134	4	2	2	0.9	4.205340083	NA	1	1	1	0.9706607	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	102707415	12A2p6	cell line	sgMsh2	102707415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	88	0	0	NA	exonic	Calcoco1	nonsynonymous SNV	Calcoco1:NM_026192:exon15:c.A2030G:p.D677G	15qF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATC	nonsynonymous	CCAT	8	CCATCCAT	NA
M7_p20	chr15	102936948	12A2p6	cell line	sgMsh2	102936948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	78	0	0	NA	exonic	Hoxc12	synonymous SNV	Hoxc12:NM_010463:exon1:c.A96G:p.S32S	15qF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr15	102990879	12A2p6	cell line	sgMsh2	102990879	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	41	0	0	NA	exonic	Hoxc8	stopgain	Hoxc8:NM_010466:exon1:c.A100T:p.R34X	15qF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	103241519	12A2p6	cell line	sgMsh2	103241519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	323	0	0	NA	exonic	Hnrnpa1	nonsynonymous SNV	"Hnrnpa1:NM_001039129:exon3:c.A206G:p.D69G,Hnrnpa1:NM_010447:exon3:c.A206G:p.D69G"	15qF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr15	103562974	12A2p6	cell line	sgMsh2	103562974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	214	0	0	NA	exonic	Glycam1	synonymous SNV	Glycam1:NM_008134:exon4:c.A366G:p.T122T	15qF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr16	4137374	12A2p6	cell line	sgMsh2	4137374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	160	0	0	NA	exonic	Crebbp	nonsynonymous SNV	Crebbp:NM_001025432:exon5:c.A1319T:p.N440I	16qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	4288835	12A2p6	cell line	sgMsh2	4288835	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.263	150	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A3125C:p.E1042A,Adcy9:NM_001291910:exon12:c.A2414C:p.E805A"	16qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	33	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M7_p20	chr16	4616855	12A2p6	cell line	sgMsh2	4616855	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	275	0	0	NA	exonic	Pam16	synonymous SNV	Pam16:NM_025571:exon4:c.G249A:p.V83V	16qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr16	4648302	12A2p6	cell line	sgMsh2	4648302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	50	0	0	NA	exonic	Vasn	nonsynonymous SNV	Vasn:NM_139307:exon2:c.T112C:p.F38L	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	4648458	12A2p6	cell line	sgMsh2	4648458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	57	0	0	NA	exonic	Vasn	nonsynonymous SNV	Vasn:NM_139307:exon2:c.A268G:p.T90A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9946893	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	4765812	12A2p6	cell line	sgMsh2	4765812	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	191	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon5:c.T743A:p.L248Q,Hmox2:NM_001357050:exon5:c.T827A:p.L276Q,Hmox2:NM_001378999:exon5:c.T800A:p.L267Q,Hmox2:NM_010443:exon5:c.T743A:p.L248Q"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.999997	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	5106071	12A2p6	cell line	sgMsh2	5106071	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	134	0	0	NA	exonic	Ppl	nonsynonymous SNV	Ppl:NM_008909:exon5:c.C538T:p.P180S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.635473613	2	0.9960402	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	5236390	12A2p6	cell line	sgMsh2	5236390	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	119	0	0	NA	exonic	Alg1	nonsynonymous SNV	Alg1:NM_145362:exon4:c.T461G:p.I154S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998334	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	7224509	12A2p6	cell line	sgMsh2	7224509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	69	0	0	NA	exonic	Rbfox1	nonsynonymous SNV	"Rbfox1:NM_001359726:exon2:c.A298G:p.S100G,Rbfox1:NM_001359728:exon2:c.A298G:p.S100G,Rbfox1:NM_001359729:exon2:c.A298G:p.S100G,Rbfox1:NM_183188:exon2:c.A286G:p.S96G,Rbfox1:NM_001359723:exon5:c.A226G:p.S76G,Rbfox1:NM_001359724:exon5:c.A226G:p.S76G,Rbfox1:NM_001359730:exon5:c.A226G:p.S76G,Rbfox1:NM_001359725:exon6:c.A226G:p.S76G,Rbfox1:NM_021477:exon6:c.A226G:p.S76G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9972784	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	8409720	12A2p6	cell line	sgMsh2	8409720	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	87	0	0	NA	exonic	Tmem114	nonsynonymous SNV	Tmem114:NM_029070:exon4:c.T478G:p.S160A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.8827369	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	8708904	12A2p6	cell line	sgMsh2	8708904	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	112	0	0	NA	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon5:c.T569G:p.V190G	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9838484	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	10480230	12A2p6	cell line	sgMsh2	10480230	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	exonic	Ciita	synonymous SNV	"Ciita:NM_001243760:exon1:c.C87T:p.G29G,Ciita:NM_001302618:exon1:c.C87T:p.G29G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr16	10508578	12A2p6	cell line	sgMsh2	10508578	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	94	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon8:c.A860G:p.Q287R,Ciita:NM_001243761:exon8:c.A623G:p.Q208R,Ciita:NM_001302618:exon8:c.A863G:p.Q288R,Ciita:NM_007575:exon8:c.A632G:p.Q211R,Ciita:NM_001302619:exon9:c.A560G:p.Q187R"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9667936	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	11147315	12A2p6	cell line	sgMsh2	11147315	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	92	0	0	NA	exonic	Zc3h7a	synonymous SNV	Zc3h7a:NM_145931:exon16:c.C1953A:p.A651A	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9862271	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr16	11228191	12A2p6	cell line	sgMsh2	11228191	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	88	0	0	NA	exonic	Gspt1	nonsynonymous SNV	"Gspt1:NM_001130008:exon11:c.T1346C:p.M449T,Gspt1:NM_146066:exon11:c.T1349C:p.M450T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9990578	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	11313991	12A2p6	cell line	sgMsh2	11313991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	355	0	0	NA	exonic	Tnfrsf17	synonymous SNV	Tnfrsf17:NM_011608:exon1:c.T39C:p.S13S	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.31E-09	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr16	13401031	12A2p6	cell line	sgMsh2	13401031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	293	0	0	NA	exonic	Mrtfb	nonsynonymous SNV	"Mrtfb:NM_153588:exon10:c.A1540C:p.T514P,Mrtfb:NM_001122667:exon12:c.A1573C:p.T525P"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.09E-08	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	13791967	12A2p6	cell line	sgMsh2	13791967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	152	0	0	NA	exonic	Rrn3	nonsynonymous SNV	Rrn3:NM_001039521:exon8:c.T638G:p.V213G	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	110	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997245	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	224	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	14152629	12A2p6	cell line	sgMsh2	14152629	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	161	0	0	NA	exonic	Marf1	synonymous SNV	Marf1:NM_001081154:exon3:c.A225T:p.P75P	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999841	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr16	16303674	12A2p6	cell line	sgMsh2	16303674	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	59	0	0	NA	exonic	Yars2	nonsynonymous SNV	Yars2:NM_198246:exon1:c.T691A:p.Y231N	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9952486	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	17148360	12A2p6	cell line	sgMsh2	17148360	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	42	0	0	NA	exonic	Ydjc	synonymous SNV	"Ydjc:NM_001378794:exon5:c.G810A:p.E270E,Ydjc:NM_026940:exon5:c.G807A:p.E269E"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9552689	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr16	17281983	12A2p6	cell line	sgMsh2	17281983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	46	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon52:c.A5775G:p.S1925S,Pi4ka:NM_001373955:exon52:c.A5958G:p.S1986S"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9190007	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr16	17297275	12A2p6	cell line	sgMsh2	17297275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	102	0	0	NA	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon38:c.A4249G:p.T1417A,Pi4ka:NM_001373955:exon38:c.A4432G:p.T1478A"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995691	GTT	nonsynonymous	GGTT	8	GGTTGGTT	NA
M7_p20	chr16	17342352	12A2p6	cell line	sgMsh2	17342352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	122	0	0	NA	exonic	Serpind1	nonsynonymous SNV	"Serpind1:NM_001331047:exon4:c.T1112C:p.V371A,Serpind1:NM_008223:exon4:c.T1112C:p.V371A"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	17640995	12A2p6	cell line	sgMsh2	17640995	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	65	0	0	NA	exonic	Smpd4	synonymous SNV	"Smpd4:NM_001164610:exon15:c.T1494C:p.H498H,Smpd4:NM_001164611:exon15:c.T1491C:p.H497H,Smpd4:NM_001164609:exon16:c.T1533C:p.H511H,Smpd4:NM_029945:exon16:c.T1581C:p.H527H"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr16	17849750	12A2p6	cell line	sgMsh2	17849750	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	135	0	0	NA	exonic	Dgcr2	nonsynonymous SNV	"Dgcr2:NM_001109750:exon7:c.T835C:p.F279L,Dgcr2:NM_010048:exon7:c.T844C:p.F282L"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	17898798	12A2p6	cell line	sgMsh2	17898798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	88	0	0	NA	exonic	Tssk2	nonsynonymous SNV	Tssk2:NM_009436:exon1:c.T64C:p.S22P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9681214	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	50	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	19407099	12A2p6	cell line	sgMsh2	19407099	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.228	160	0	0	NA	exonic	Olfr165	frameshift deletion	Olfr165:NM_146466:exon1:c.919delA:p.R307Gfs*7	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	ATCC	8	ATCCATCC	-1
M7_p20	chr16	19407757	12A2p6	cell line	sgMsh2	19407757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	215	0	0	NA	exonic	Olfr165	synonymous SNV	Olfr165:NM_146466:exon1:c.T261C:p.L87L	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999992	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr16	19487703	12A2p6	cell line	sgMsh2	19487703	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	208	0	0	NA	exonic	Olfr166	synonymous SNV	Olfr166:NM_147068:exon1:c.T864C:p.I288I	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9988631	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr16	19530213	12A2p6	cell line	sgMsh2	19530213	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	439	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.G706A:p.A236T	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GCC	nonsynonymous	CTT	9	CTTCTTCTT	NA
M7_p20	chr16	19530407	12A2p6	cell line	sgMsh2	19530407	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	709	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.G512T:p.R171M	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	19947087	12A2p6	cell line	sgMsh2	19947087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	209	0	0	NA	exonic	Klhl6	stopgain	Klhl6:NM_183390:exon7:c.T1764A:p.C588X	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999879	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	19957248	12A2p6	cell line	sgMsh2	19957248	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	56	0	0	NA	exonic	Klhl6	nonsynonymous SNV	Klhl6:NM_183390:exon3:c.T559G:p.L187V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.940162	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	20398878	12A2p6	cell line	sgMsh2	20398878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	212	0	0	NA	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon8:c.T1082C:p.V361A	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999991	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	20422350	12A2p6	cell line	sgMsh2	20422350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	44	0	0	NA	exonic	Abcc5	synonymous SNV	"Abcc5:NM_013790:exon2:c.G84A:p.G28G,Abcc5:NM_176839:exon2:c.G84A:p.G28G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9890748	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr16	20679994	12A2p6	cell line	sgMsh2	20679994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	39	0	0	NA	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon9:c.T1479C:p.S493S,Eif4g1:NM_145941:exon10:c.T1500C:p.S500S"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9847695	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr16	20738726	12A2p6	cell line	sgMsh2	20738726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	19	0	0	NA	exonic	Chrd	synonymous SNV	"Chrd:NM_001278041:exon16:c.T2160C:p.P720P,Chrd:NM_001354996:exon16:c.T2094C:p.P698P,Chrd:NM_009893:exon16:c.T2094C:p.P698P,Chrd:NM_001354995:exon17:c.T657C:p.P219P"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9571948	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr16	21217233	12A2p6	cell line	sgMsh2	21217233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	51	0	0	NA	exonic	Ephb3	synonymous SNV	Ephb3:NM_010143:exon4:c.A870G:p.E290E	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.850413217	1	0.927174	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr16	21908697	12A2p6	cell line	sgMsh2	21908697	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	181	0	0	NA	exonic	Map3k13	synonymous SNV	Map3k13:NM_172821:exon7:c.T1308C:p.F436F	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999948	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	44	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9890748	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	23118058	12A2p6	cell line	sgMsh2	23118058	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	173	0	0	NA	exonic	Rfc4	nonsynonymous SNV	Rfc4:NM_145480:exon5:c.A296G:p.E99G	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999919	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	23977567	12A2p6	cell line	sgMsh2	23977567	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	166	0	0	NA	exonic	Bcl6	nonsynonymous SNV	"Bcl6:NM_001348026:exon3:c.G109A:p.V37M,Bcl6:NM_009744:exon3:c.G109A:p.V37M"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.990304	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	27444556	12A2p6	cell line	sgMsh2	27444556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	316	0	0	NA	exonic	Ccdc50	synonymous SNV	"Ccdc50:NM_001025615:exon9:c.T759C:p.P253P,Ccdc50:NM_026202:exon10:c.T804C:p.P268P,Ccdc50:NM_001289436:exon11:c.T354C:p.P118P"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9976427	CTA	synonymous	ACC	12	ACCACCACCACC	NA
M7_p20	chr16	28752846	12A2p6	cell line	sgMsh2	28752846	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	35	0	0	NA	exonic	Fgf12	frameshift deletion	Fgf12:NM_010199:exon2:c.1delA:p.M1Wfs*7	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr16	28828824	12A2p6	cell line	sgMsh2	28828824	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	151	0	0	NA	exonic	Mb21d2	nonsynonymous SNV	Mb21d2:NM_177718:exon2:c.C397T:p.P133S	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999722	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	30260866	12A2p6	cell line	sgMsh2	30260866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	21	0	0	NA	exonic	Cpn2	nonsynonymous SNV	Cpn2:NM_027904:exon2:c.T16C:p.W6R	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9615551	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	30272931	12A2p6	cell line	sgMsh2	30272931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	283	0	0	NA	exonic	Lrrc15	nonsynonymous SNV	Lrrc15:NM_028973:exon2:c.T1589C:p.M530T	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.83E-08	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	31274935	12A2p6	cell line	sgMsh2	31274935	T	C	SNV	Mutect2;Strelka2	2	0.299	13	0	0	NA	exonic	Ppp1r2	synonymous SNV	Ppp1r2:NM_025800:exon1:c.A36G:p.K12K	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9410259	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr16	31303521	12A2p6	cell line	sgMsh2	31303521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	117	0	0	NA	exonic	Apod	nonsynonymous SNV	"Apod:NM_001301354:exon3:c.G134A:p.R45K,Apod:NM_001301353:exon4:c.G134A:p.R45K,Apod:NM_007470:exon4:c.G134A:p.R45K"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998137	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32084622	12A2p6	cell line	sgMsh2	32084622	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	122	0	0	NA	exonic	Pigx	nonsynonymous SNV	"Pigx:NM_001111025:exon6:c.T620C:p.L207P,Pigx:NM_024464:exon6:c.T626C:p.L209P"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9983474	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32291951	12A2p6	cell line	sgMsh2	32291951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	226	0	0	NA	exonic	Rnf168	synonymous SNV	Rnf168:NM_027355:exon5:c.T735C:p.A245A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr16	32751782	12A2p6	cell line	sgMsh2	32751782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	466	0	0	NA	exonic	Muc4	synonymous SNV	Muc4:NM_080457:exon2:c.A1659G:p.T553T	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	136	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999356	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32776913	12A2p6	cell line	sgMsh2	32776913	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	71	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon22:c.A9626T:p.N3209I	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9975657	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32794384	12A2p6	cell line	sgMsh2	32794384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	556	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.A622G:p.T208A,Muc20:NM_146071:exon2:c.A622G:p.T208A"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32847841	12A2p6	cell line	sgMsh2	32847841	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon4:c.A455T:p.K152I,Rubcn:NM_001374776:exon4:c.A272T:p.K91I,Rubcn:NM_172615:exon4:c.A455T:p.K152I"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	32959460	12A2p6	cell line	sgMsh2	32959460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon5:c.T706C:p.C236R,Lrch3:NM_001310672:exon5:c.T706C:p.C236R,Lrch3:NM_001310673:exon5:c.T706C:p.C236R,Lrch3:NM_001310674:exon5:c.T706C:p.C236R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9916042	TTG	nonsynonymous	TGTT	8	TGTTTGTT	NA
M7_p20	chr16	33725486	12A2p6	cell line	sgMsh2	33725486	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	83	0	0	NA	exonic	Heg1	synonymous SNV	Heg1:NM_175256:exon3:c.T606G:p.A202A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr16	33763612	12A2p6	cell line	sgMsh2	33763612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	57	0	0	NA	exonic	Heg1	nonsynonymous SNV	Heg1:NM_175256:exon14:c.A3095C:p.Y1032S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.738270815	1	0.6527525	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	33975874	12A2p6	cell line	sgMsh2	33975874	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	108	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon60:c.T8591C:p.L2864P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9996919	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	33977543	12A2p6	cell line	sgMsh2	33977543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	141	0	0	NA	exonic	Kalrn	nonsynonymous SNV	Kalrn:NM_177357:exon59:c.G8368A:p.A2790T	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999513	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	34723396	12A2p6	cell line	sgMsh2	34723396	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	131	0	0	NA	exonic	Ccdc14	nonsynonymous SNV	Ccdc14:NM_172824:exon13:c.A2267G:p.N756S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999149	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	34723880	12A2p6	cell line	sgMsh2	34723880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	53	0	0	NA	exonic	Ccdc14	synonymous SNV	Ccdc14:NM_172824:exon13:c.T2751C:p.D917D	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9933668	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr16	35814030	12A2p6	cell line	sgMsh2	35814030	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	129	0	0	NA	exonic	Hspbap1	nonsynonymous SNV	Hspbap1:NM_175111:exon4:c.A545G:p.N182S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	129	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	35863528	12A2p6	cell line	sgMsh2	35863528	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	80	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon4:c.T427A:p.C143S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.747616015	1	0.5723018	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	36615278	12A2p6	cell line	sgMsh2	36615278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	192	0	0	NA	exonic	Cd86	nonsynonymous SNV	Cd86:NM_019388:exon5:c.T776C:p.L259P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	37139968	12A2p6	cell line	sgMsh2	37139968	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.299	95	0	0	NA	exonic	Stxbp5l	frameshift insertion	"Stxbp5l:NM_001114611:exon21:c.2288dupA:p.N763Kfs*1,Stxbp5l:NM_001114612:exon22:c.2459dupA:p.N820Kfs*1,Stxbp5l:NM_001114613:exon22:c.2360dupA:p.N787Kfs*1,Stxbp5l:NM_172440:exon23:c.2531dupA:p.N844Kfs*1"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M7_p20	chr16	37818952	12A2p6	cell line	sgMsh2	37818952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	169	0	0	NA	exonic	Fstl1	nonsynonymous SNV	Fstl1:NM_008047:exon4:c.T211C:p.Y71H	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999898	CTA	nonsynonymous	ACCT	8	ACCTACCT	NA
M7_p20	chr16	38332185	12A2p6	cell line	sgMsh2	38332185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	153	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T662C:p.L221P	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999751	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	38332237	12A2p6	cell line	sgMsh2	38332237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	194	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon6:c.T610C:p.Y204H	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999975	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	43982105	12A2p6	cell line	sgMsh2	43982105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	172	0	0	NA	exonic	Gramd1c	nonsynonymous SNV	"Gramd1c:NM_001172107:exon13:c.T1327C:p.F443L,Gramd1c:NM_153528:exon13:c.T1327C:p.F443L,Gramd1c:NM_001359085:exon17:c.T1858C:p.F620L"	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	AAG	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	221	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	44429904	12A2p6	cell line	sgMsh2	44429904	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	109	0	0	NA	exonic	Cfap44	nonsynonymous SNV	Cfap44:NM_001033247:exon18:c.T2344G:p.F782V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	44488543	12A2p6	cell line	sgMsh2	44488543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	46	0	0	NA	exonic	Boc	nonsynonymous SNV	Boc:NM_172506:exon15:c.C2605T:p.P869S	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9845194	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	45183749	12A2p6	cell line	sgMsh2	45183749	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	302	0	0	NA	exonic	Atg3	nonsynonymous SNV	"Atg3:NM_001356366:exon9:c.T473A:p.V158E,Atg3:NM_026402:exon10:c.T734A:p.V245E"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	6.98E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	45547695	12A2p6	cell line	sgMsh2	45547695	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	221	0	0	NA	exonic	Slc9c1	nonsynonymous SNV	Slc9c1:NM_198106:exon6:c.T646A:p.F216I	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	45980623	12A2p6	cell line	sgMsh2	45980623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	68	0	0	NA	exonic	Plcxd2	nonsynonymous SNV	Plcxd2:NM_001134480:exon2:c.A237G:p.I79M	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.616783212	2	0.8992544	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	416	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	49001667	12A2p6	cell line	sgMsh2	49001667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	120	0	0	NA	exonic	Cip2a	synonymous SNV	Cip2a:NM_172616:exon6:c.A657G:p.L219L	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998425	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr16	52189136	12A2p6	cell line	sgMsh2	52189136	T	-	Deletion	Mutect2;Vardict	2	0.224	16	0	0	NA	exonic	Cblb	frameshift deletion	Cblb:NM_001033238:exon16:c.2420delT:p.F808Sfs*97	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr16	56111620	12A2p6	cell line	sgMsh2	56111620	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	405	0	0	NA	exonic	Senp7	nonsynonymous SNV	"Senp7:NM_001003973:exon4:c.T200C:p.M67T,Senp7:NM_001003972:exon5:c.T281C:p.M94T,Senp7:NM_001304503:exon5:c.T281C:p.M94T,Senp7:NM_025483:exon5:c.T281C:p.M94T"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.256993005	3	1	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	56732892	12A2p6	cell line	sgMsh2	56732892	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	188	0	0	NA	exonic	Adgrg7	nonsynonymous SNV	Adgrg7:NM_172825:exon14:c.A1841T:p.D614V	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.752288615	2	0.8588079	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	57214237	12A2p6	cell line	sgMsh2	57214237	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	150	0	0	NA	exonic	Tbc1d23	synonymous SNV	"Tbc1d23:NM_001358433:exon3:c.T198C:p.S66S,Tbc1d23:NM_026254:exon3:c.T198C:p.S66S"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999706	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr16	57570538	12A2p6	cell line	sgMsh2	57570538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	0	0	NA	exonic	Filip1l	synonymous SNV	"Filip1l:NM_001177871:exon2:c.G774T:p.V258V,Filip1l:NM_001040397:exon5:c.G1488T:p.V496V"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9970109	TGA	synonymous	NA	NA	NA	NA
M7_p20	chr16	59216355	12A2p6	cell line	sgMsh2	59216355	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	222	0	0	NA	exonic	Olfr199	frameshift deletion	Olfr199:NM_207550:exon1:c.257delT:p.L86Yfs*6	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr16	59269251	12A2p6	cell line	sgMsh2	59269251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	349	0	0	NA	exonic	Olfr201	nonsynonymous SNV	Olfr201:NM_146994:exon1:c.A415G:p.R139G	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.43E-09	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	59314714	12A2p6	cell line	sgMsh2	59314714	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	218	0	0	NA	exonic	Olfr204	nonsynonymous SNV	Olfr204:NM_146992:exon1:c.G692T:p.R231M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	59362061	12A2p6	cell line	sgMsh2	59362061	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	638	0	0	NA	exonic	Olfr207;Olfr209	synonymous SNV	"Olfr207:NM_001011792:exon1:c.T156C:p.P52P,Olfr209:NM_207551:exon1:c.T156C:p.P52P"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.654164013	2	1.00E-09	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr16	59415267	12A2p6	cell line	sgMsh2	59415267	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	234	0	0	NA	exonic	Gabrr3	nonsynonymous SNV	Gabrr3:NM_001081190:exon2:c.G131A:p.R44K	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	59461624	12A2p6	cell line	sgMsh2	59461624	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	121	0	0	NA	exonic	Gabrr3	synonymous SNV	Gabrr3:NM_001081190:exon9:c.A1341G:p.V447V	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr16	59530197	12A2p6	cell line	sgMsh2	59530197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	44	0	0	NA	exonic	Crybg3	synonymous SNV	Crybg3:NM_174848:exon14:c.C7821T:p.G2607G	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9890748	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr16	62822229	12A2p6	cell line	sgMsh2	62822229	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	164	0	0	NA	exonic	Stx19	nonsynonymous SNV	Stx19:NM_026588:exon2:c.C407A:p.A136D	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999106	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	63773391	12A2p6	cell line	sgMsh2	63773391	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.206	80	0	0	NA	exonic	Epha3	frameshift insertion	"Epha3:NM_001362452:exon3:c.332dupT:p.L111Ffs*10,Epha3:NM_010140:exon3:c.332dupT:p.L111Ffs*10"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.962555619	NA	NA	CCA	frameshift	NA	NA	NA	1
M7_p20	chr16	64478496	12A2p6	cell line	sgMsh2	64478496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	200	0	0	NA	exonic	Csnka2ip	nonsynonymous SNV	"Csnka2ip:NM_001368721:exon3:c.A1504G:p.K502E,Csnka2ip:NM_173861:exon3:c.A1504G:p.K502E"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999982	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	64926197	12A2p6	cell line	sgMsh2	64926197	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	0	0	NA	exonic	Htr1f	nonsynonymous SNV	Htr1f:NM_008310:exon3:c.C731T:p.S244F	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8501983	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	66882797	12A2p6	cell line	sgMsh2	66882797	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	179	0	0	NA	exonic	Cadm2	synonymous SNV	"Cadm2:NM_001145977:exon2:c.T147C:p.N49N,Cadm2:NM_001347247:exon2:c.T147C:p.N49N,Cadm2:NM_178721:exon3:c.T174C:p.N58N"	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999942	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr16	69857128	12A2p6	cell line	sgMsh2	69857128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	73	0	0	NA	exonic	Speer2	synonymous SNV	Speer2:NM_173069:exon6:c.T732C:p.H244H	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9978227	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr16	70483864	12A2p6	cell line	sgMsh2	70483864	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	360	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon9:c.A1152C:p.Q384H	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	1.23E-09	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	72972373	12A2p6	cell line	sgMsh2	72972373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	58	0	0	NA	exonic	Robo1	nonsynonymous SNV	Robo1:NM_019413:exon11:c.T1679C:p.F560S	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9738055	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	77114936	12A2p6	cell line	sgMsh2	77114936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	171	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon23:c.T2852C:p.V951A	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999909	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	81490349	12A2p6	cell line	sgMsh2	81490349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	164	0	0	NA	exonic	Ncam2	nonsynonymous SNV	"Ncam2:NM_001113208:exon9:c.A1150G:p.S384G,Ncam2:NM_010954:exon9:c.A1150G:p.S384G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9681202	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	81595208	12A2p6	cell line	sgMsh2	81595208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	106	0	0	NA	exonic	Ncam2	nonsynonymous SNV	Ncam2:NM_010954:exon16:c.T2079A:p.D693E	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996555	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	85899599	12A2p6	cell line	sgMsh2	85899599	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	22	0	0	NA	exonic	Adamts5	synonymous SNV	Adamts5:NM_011782:exon1:c.G669T:p.S223S	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9635712	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr16	85899765	12A2p6	cell line	sgMsh2	85899765	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	82	0	0	NA	exonic	Adamts5	nonsynonymous SNV	Adamts5:NM_011782:exon1:c.A503C:p.K168T	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.9986826	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	87719648	12A2p6	cell line	sgMsh2	87719648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	92	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.A1076G:p.D359G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.616783212	2	0.9754985	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	88884969	12A2p6	cell line	sgMsh2	88884969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Krtap19-4	nonsynonymous SNV	Krtap19-4:NM_130873:exon1:c.G98A:p.R33H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	88896399	12A2p6	cell line	sgMsh2	88896399	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.121	66	0	0	NA	exonic	Krtap19-5	synonymous SNV	Krtap19-5:NM_010676:exon1:c.C24T:p.Y8Y	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.565384611	2	0.00097189	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr16	89833118	12A2p6	cell line	sgMsh2	89833118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	30	0	0	NA	exonic	Tiam1	nonsynonymous SNV	"Tiam1:NM_001145886:exon15:c.T2779C:p.Y927H,Tiam1:NM_009384:exon15:c.T2779C:p.Y927H"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9764031	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	90475960	12A2p6	cell line	sgMsh2	90475960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	21	0	0	NA	exonic	Hunk	nonsynonymous SNV	Hunk:NM_015755:exon7:c.A1151G:p.K384R	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9615551	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	90752060	12A2p6	cell line	sgMsh2	90752060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	41	0	0	NA	exonic	Urb1	synonymous SNV	Urb1:NM_029497:exon39:c.T6759C:p.L2253L	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9323582	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr16	90753500	12A2p6	cell line	sgMsh2	90753500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	72	0	0	NA	exonic	Urb1	nonsynonymous SNV	Urb1:NM_029497:exon38:c.T6463C:p.Y2155H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9935196	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	90961452	12A2p6	cell line	sgMsh2	90961452	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	71	0	0	NA	exonic	Synj1	nonsynonymous SNV	"Synj1:NM_001045515:exon19:c.A2383G:p.T795A,Synj1:NM_001164483:exon19:c.A2503G:p.T835A"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9975657	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	198	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.999998	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr16	91501628	12A2p6	cell line	sgMsh2	91501628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	126	0	0	NA	exonic	Ifnar1	nonsynonymous SNV	Ifnar1:NM_010508:exon9:c.A1132G:p.M378V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9996645	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	91686273	12A2p6	cell line	sgMsh2	91686273	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	30	0	0	NA	exonic	Donson	nonsynonymous SNV	Donson:NM_021720:exon3:c.C485T:p.S162F	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9764031	AGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	94432031	12A2p6	cell line	sgMsh2	94432031	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	113	0	0	NA	exonic	Ttc3	nonsynonymous SNV	Ttc3:NM_009441:exon28:c.A2984C:p.D995A	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997671	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	94502227	12A2p6	cell line	sgMsh2	94502227	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	62	0	0	NA	exonic	Vps26c	synonymous SNV	Vps26c:NM_007834:exon6:c.T513C:p.A171A	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9719487	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	89	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	2	1	1	0.999109	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	96033652	12A2p6	cell line	sgMsh2	96033652	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	295	0	0	NA	exonic	Brwd1	nonsynonymous SNV	"Brwd1:NM_001103179:exon25:c.C2936A:p.A979D,Brwd1:NM_145125:exon25:c.C2936A:p.A979D"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr16	96819972	12A2p6	cell line	sgMsh2	96819972	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.311	84	0	0	NA	exonic	Dscam	frameshift deletion	Dscam:NM_031174:exon8:c.1535delA:p.N512Tfs*4	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr16	97803739	12A2p6	cell line	sgMsh2	97803739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	186	0	0	NA	exonic	Prdm15	nonsynonymous SNV	"Prdm15:NM_001359078:exon18:c.A881G:p.N294S,Prdm15:NM_001359077:exon19:c.A2390G:p.N797S,Prdm15:NM_144789:exon19:c.A2468G:p.N823S"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	3168037	12A2p6	cell line	sgMsh2	3168037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	119	0	0	NA	exonic	Scaf8	synonymous SNV	Scaf8:NM_134123:exon7:c.T681C:p.A227A	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998334	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	3453370	12A2p6	cell line	sgMsh2	3453370	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	366	0	0	NA	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon13:c.T2821G:p.F941V,Tiam2:NM_011878:exon13:c.T2821G:p.F941V"	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	1.17E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	5291024	12A2p6	cell line	sgMsh2	5291024	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.139	70	0	0	NA	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon8:c.A2446G:p.M816V	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.649491413	2	0.8331419	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	6022256	12A2p6	cell line	sgMsh2	6022256	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	265	0	0	NA	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001290698:exon10:c.A1343G:p.K448R,Synj2:NM_001113351:exon15:c.A2036G:p.K679R,Synj2:NM_001357665:exon15:c.A1166G:p.K389R,Synj2:NM_001357667:exon15:c.A2036G:p.K679R,Synj2:NM_011523:exon15:c.A2036G:p.K679R,Synj2:NM_001113352:exon16:c.A2291G:p.K764R,Synj2:NM_001113353:exon16:c.A2291G:p.K764R"	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	4.84E-08	AAA	nonsynonymous	AAGT	8	AAGTAAGT	NA
M7_p20	chr17	7255928	12A2p6	cell line	sgMsh2	7255928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	96	0	0	NA	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon8:c.T702C:p.R234R	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9993975	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	7271596	12A2p6	cell line	sgMsh2	7271596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	307	0	0	NA	exonic	Rps6ka2	synonymous SNV	Rps6ka2:NM_011299:exon11:c.T912C:p.A304A	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	5.52E-09	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	7277546	12A2p6	cell line	sgMsh2	7277546	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	122	0	0	NA	exonic	Rps6ka2	nonsynonymous SNV	Rps6ka2:NM_011299:exon12:c.T1056A:p.F352L	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998592	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	8169062	12A2p6	cell line	sgMsh2	8169062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.473	126	0	0	NA	exonic	Cep43	synonymous SNV	"Cep43:NM_001197046:exon3:c.T184C:p.L62L,Cep43:NM_201230:exon3:c.T184C:p.L62L"	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	2	1	1	0.9998874	CTT	synonymous	A	5	AAAAA	NA
M7_p20	chr17	12210663	12A2p6	cell line	sgMsh2	12210663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	151	0	0	NA	exonic	Agpat4	nonsynonymous SNV	Agpat4:NM_026644:exon5:c.C535T:p.R179W	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999722	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	12892818	12A2p6	cell line	sgMsh2	12892818	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	88	0	0	NA	exonic	Pnldc1	stopgain	Pnldc1:NM_001034866:exon13:c.T1001A:p.L334X	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.98591862	1	0.9986198	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	13225746	12A2p6	cell line	sgMsh2	13225746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	1519	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T209C:p.M70T	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.50931341	2	1	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	13235916	12A2p6	cell line	sgMsh2	13235916	A	G	SNV	Mutect2;Vardict	2	0.016	1492	0	0	NA	exonic	Smok2b	nonsynonymous SNV	Smok2b:NM_001167913:exon2:c.A962G:p.D321G	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.074761601	3	1	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	13846634	12A2p6	cell line	sgMsh2	13846634	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	133	0	0	NA	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon15:c.A2032G:p.I678V	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.99059122	1	0.999888	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	13888945	12A2p6	cell line	sgMsh2	13888945	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	197	0	0	NA	exonic	Afdn	nonsynonymous SNV	Afdn:NM_010806:exon29:c.A4774G:p.M1592V	17qA1	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999979	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	14368972	12A2p6	cell line	sgMsh2	14368972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	132	0	0	NA	exonic	Smoc2	synonymous SNV	Smoc2:NM_022315:exon8:c.T702C:p.N234N	17qA2	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999195	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr17	14671300	12A2p6	cell line	sgMsh2	14671300	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	76	0	0	NA	exonic	Thbs2	nonsynonymous SNV	Thbs2:NM_011581:exon18:c.G2974A:p.A992T	17qA2	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	0.378480608	3	0.7911949	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	14918099	12A2p6	cell line	sgMsh2	14918099	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	204	0	0	NA	exonic	Wdr27	nonsynonymous SNV	Wdr27:NM_175173:exon11:c.C1088A:p.P363H	17qA2	chr17-3079405-14988397	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999986	GGG	nonsynonymous	GCTC	8	GCTCGCTC	NA
M7_p20	chr17	15368710	12A2p6	cell line	sgMsh2	15368710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	35	0	0	NA	exonic	Dll1	nonsynonymous SNV	"Dll1:NM_007865:exon9:c.T1702C:p.C568R,Dll1:NM_001379042:exon10:c.T1702C:p.C568R"	17qA2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9820559	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	17831160	12A2p6	cell line	sgMsh2	17831160	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	43	0	0	NA	exonic	Spaca6	nonsynonymous SNV	Spaca6:NM_001162909:exon1:c.C157A:p.L53I	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9884537	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	17892838	12A2p6	cell line	sgMsh2	17892838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	328	0	0	NA	exonic	Fpr2	nonsynonymous SNV	Fpr2:NM_008039:exon2:c.T95C:p.V32A	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	2.40E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	18277423	12A2p6	cell line	sgMsh2	18277423	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	259	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon1:c.A86T:p.D29V	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	18304157	12A2p6	cell line	sgMsh2	18304157	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	373	0	0	NA	exonic	Vmn2r93	nonsynonymous SNV	Vmn2r93:NM_001104542:exon2:c.T412C:p.Y138H	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	1.11E-09	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	333	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.831722816	1	0.9671895	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	19522394	12A2p6	cell line	sgMsh2	19522394	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	280	0	0	NA	exonic	Vmn2r100	synonymous SNV	Vmn2r100:NM_001104562:exon3:c.T1029A:p.P343P	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.303719006	3	1.24E-09	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr17	19773523	12A2p6	cell line	sgMsh2	19773523	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	266	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon1:c.C161A:p.T54N	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.859758417	1	0.9955683	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	19812337	12A2p6	cell line	sgMsh2	19812337	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	377	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.C2372A:p.T791N	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	1.09E-09	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	19812523	12A2p6	cell line	sgMsh2	19812523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	31	0	0	NA	exonic	Vmn2r103	nonsynonymous SNV	Vmn2r103:NM_001104565:exon6:c.A2558G:p.Y853C	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9776579	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	20030249	12A2p6	cell line	sgMsh2	20030249	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	683	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.G1759A:p.G587R	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	1	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	20208488	12A2p6	cell line	sgMsh2	20208488	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	215	0	0	NA	exonic	Vmn2r105	synonymous SNV	Vmn2r105:NM_001369232:exon6:c.C2319T:p.F773F	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.957883019	1	0.9999873	TGA	synonymous	NA	NA	NA	NA
M7_p20	chr17	20278379	12A2p6	cell line	sgMsh2	20278379	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	163	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon3:c.C1269A:p.P423P,Vmn2r106:NM_001385160:exon3:c.C1269A:p.P423P"	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999858	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr17	20540614	12A2p6	cell line	sgMsh2	20540614	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	251	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.C2480A:p.P827H	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	20584215	12A2p6	cell line	sgMsh2	20584215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	230	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon2:c.A442G:p.T148A	17qA3.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	23665443	12A2p6	cell line	sgMsh2	23665443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	38	0	0	NA	exonic	Bicdl2	nonsynonymous SNV	Bicdl2:NM_153784:exon3:c.A338G:p.E113G	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.897139218	1	0.9509459	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24376386	12A2p6	cell line	sgMsh2	24376386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	107	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon8:c.T896C:p.L299P,Abca3:NM_013855:exon9:c.T896C:p.L299P"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9996742	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24437308	12A2p6	cell line	sgMsh2	24437308	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	112	0	0	NA	exonic	Eci1	nonsynonymous SNV	Eci1:NM_010023:exon5:c.A491T:p.N164I	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997537	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24442481	12A2p6	cell line	sgMsh2	24442481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	137	0	0	NA	exonic	Dnase1l2	nonsynonymous SNV	Dnase1l2:NM_025718:exon3:c.T157C:p.Y53H	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999391	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24575538	12A2p6	cell line	sgMsh2	24575538	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	132	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon15:c.C6198T:p.R2066R	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999195	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr17	24587208	12A2p6	cell line	sgMsh2	24587208	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	221	0	0	NA	exonic	Pkd1	synonymous SNV	Pkd1:NM_013630:exon31:c.A10056T:p.T3352T	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.967228219	1	0.9999948	CAG	synonymous	CCCACA	12	CCCACACCCACA	NA
M7_p20	chr17	24613241	12A2p6	cell line	sgMsh2	24613241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	71	0	0	NA	exonic	Tsc2	nonsynonymous SNV	"Tsc2:NM_001039363:exon20:c.T2170C:p.F724L,Tsc2:NM_001286713:exon20:c.T2170C:p.F724L,Tsc2:NM_001286714:exon20:c.T2170C:p.F724L,Tsc2:NM_001286716:exon20:c.T2170C:p.F724L,Tsc2:NM_001286718:exon20:c.T2170C:p.F724L,Tsc2:NM_001286720:exon20:c.T2170C:p.F724L,Tsc2:NM_011647:exon20:c.T2170C:p.F724L"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9975657	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24705424	12A2p6	cell line	sgMsh2	24705424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	253	0	0	NA	exonic	Tbl3	nonsynonymous SNV	Tbl3:NM_145396:exon6:c.A437G:p.H146R	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	24880730	12A2p6	cell line	sgMsh2	24880730	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	83	0	0	NA	exonic	Igfals	nonsynonymous SNV	"Igfals:NM_001364895:exon2:c.T794G:p.M265R,Igfals:NM_001364896:exon2:c.T899G:p.M300R,Igfals:NM_008340:exon2:c.T794G:p.M265R"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.864431017	1	0.9614338	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25092449	12A2p6	cell line	sgMsh2	25092449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	105	0	0	NA	exonic	Ift140	nonsynonymous SNV	Ift140:NM_134126:exon26:c.A3617G:p.Y1206C	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.976573419	1	0.9992223	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25113114	12A2p6	cell line	sgMsh2	25113114	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	70	0	0	NA	exonic	Telo2	nonsynonymous SNV	"Telo2:NM_001163661:exon3:c.T479A:p.V160D,Telo2:NM_027880:exon3:c.T479A:p.V160D"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.997426	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25373836	12A2p6	cell line	sgMsh2	25373836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	45	0	0	NA	exonic	Tpsg1	nonsynonymous SNV	"Tpsg1:NM_001357726:exon3:c.T290C:p.M97T,Tpsg1:NM_012034:exon4:c.T599C:p.M200T"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9896629	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25393902	12A2p6	cell line	sgMsh2	25393902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	50	0	0	NA	exonic	Cacna1h	nonsynonymous SNV	"Cacna1h:NM_001163691:exon7:c.A946G:p.T316A,Cacna1h:NM_021415:exon7:c.A946G:p.T316A"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9921647	GTG	nonsynonymous	TGCAC	10	TGCACTGCAC	NA
M7_p20	chr17	25746793	12A2p6	cell line	sgMsh2	25746793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	32	0	0	NA	exonic	Mslnl	nonsynonymous SNV	Mslnl:NM_177822:exon15:c.T1640C:p.V547A	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9788474	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25777348	12A2p6	cell line	sgMsh2	25777348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	47	0	0	NA	exonic	Ciao3	synonymous SNV	Ciao3:NM_026238:exon4:c.G330A:p.R110R	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9907467	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr17	25831566	12A2p6	cell line	sgMsh2	25831566	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	157	0	0	NA	exonic	Stub1	nonsynonymous SNV	Stub1:NM_019719:exon4:c.A593T:p.Q198L	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999801	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25846344	12A2p6	cell line	sgMsh2	25846344	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	71	0	0	NA	exonic	Wdr90	nonsynonymous SNV	Wdr90:NM_001163766:exon36:c.A4937G:p.Y1646C	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9975657	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25883786	12A2p6	cell line	sgMsh2	25883786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	79	0	0	NA	exonic	Rab40c	nonsynonymous SNV	Rab40c:NM_139154:exon7:c.G688A:p.G230S	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.934520019	1	0.992366	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	25960509	12A2p6	cell line	sgMsh2	25960509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	49	0	0	NA	exonic	Capn15	synonymous SNV	"Capn15:NM_015830:exon8:c.G2592A:p.R864R,Capn15:NM_001347334:exon10:c.G2790A:p.R930R"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9917177	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr17	26067991	12A2p6	cell line	sgMsh2	26067991	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	45	0	0	NA	exonic	Rab11fip3	nonsynonymous SNV	"Rab11fip3:NM_001162868:exon1:c.T1187A:p.V396E,Rab11fip3:NM_001162869:exon1:c.T1187A:p.V396E"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9896629	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	28362961	12A2p6	cell line	sgMsh2	28362961	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	24	0	0	NA	exonic	Tulp1	nonsynonymous SNV	Tulp1:NM_021478:exon6:c.A518G:p.K173R	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9673015	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	30530221	12A2p6	cell line	sgMsh2	30530221	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	269	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon2:c.T118C:p.F40L,Btbd9:NM_172618:exon2:c.T118C:p.F40L"	17qA3.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.761633815	2	0.9363755	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	32144796	12A2p6	cell line	sgMsh2	32144796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	124	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon21:c.T3369C:p.N1123N	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998741	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr17	32392616	12A2p6	cell line	sgMsh2	32392616	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.375	21	0	0	NA	exonic	Rasal3	stopgain	"Rasal3:NM_178785:exon14:c.C2530T:p.Q844X,Rasal3:NM_001374604:exon15:c.C2464T:p.Q822X,Rasal3:NM_001347343:exon16:c.C2536T:p.Q846X"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9615551	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	33432978	12A2p6	cell line	sgMsh2	33432978	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	43	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A11T:p.N4I	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9884537	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	33434038	12A2p6	cell line	sgMsh2	33434038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	91	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.A1071G:p.L357L	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9992032	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr17	33538663	12A2p6	cell line	sgMsh2	33538663	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.225	170	0	0	NA	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon9:c.A233C:p.E78A,Adamts10:NM_001329143:exon10:c.A233C:p.E78A,Adamts10:NM_001329151:exon10:c.A13C:p.S5R,Adamts10:NM_001329152:exon10:c.A13C:p.S5R,Adamts10:NM_001329153:exon10:c.A13C:p.S5R,Adamts10:NM_001329154:exon10:c.A13C:p.S5R,Adamts10:NM_001329202:exon11:c.A13C:p.S5R,Adamts10:NM_001329203:exon11:c.A326C:p.E109A,Adamts10:NM_172619:exon11:c.A1430C:p.E477A"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999904	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	33642056	12A2p6	cell line	sgMsh2	33642056	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	339	0	0	NA	exonic	Pram1	nonsynonymous SNV	Pram1:NM_001002842:exon3:c.A1523G:p.Q508R	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	1.76E-09	CAG	nonsynonymous	AGTG	8	AGTGAGTG	NA
M7_p20	chr17	33943640	12A2p6	cell line	sgMsh2	33943640	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	67	0	0	NA	exonic	Wdr46	nonsynonymous SNV	Wdr46:NM_020603:exon8:c.T808C:p.C270R	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.911157018	1	0.9812189	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	34059163	12A2p6	cell line	sgMsh2	34059163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	52	0	0	NA	exonic	Col11a2	synonymous SNV	"Col11a2:NM_009926:exon41:c.T2991C:p.D997D,Col11a2:NM_001317722:exon42:c.T3186C:p.D1062D"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.992988	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr17	34685052	12A2p6	cell line	sgMsh2	34685052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	88	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon7:c.T3166C:p.Y1056H	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.803687216	1	0.8372376	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	25	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9690252	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	34841189	12A2p6	cell line	sgMsh2	34841189	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	81	0	0	NA	exonic	Skiv2l	synonymous SNV	Skiv2l:NM_021337:exon22:c.T2604C:p.F868F	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.998607	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr17	35032371	12A2p6	cell line	sgMsh2	35032371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	151	0	0	NA	exonic	Msh5	synonymous SNV	"Msh5:NM_013600:exon15:c.T1374C:p.S458S,Msh5:NM_001146215:exon16:c.T1374C:p.S458S"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.892466618	1	0.9958529	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr17	35117732	12A2p6	cell line	sgMsh2	35117732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	140	0	0	NA	exonic	Csnk2b	nonsynonymous SNV	"Csnk2b:NM_001303445:exon6:c.A521G:p.Y174C,Csnk2b:NM_001303446:exon6:c.A584G:p.Y195C,Csnk2b:NM_009975:exon6:c.A521G:p.Y174C"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.859758417	1	0.9785104	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35159890	12A2p6	cell line	sgMsh2	35159890	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	27	0	0	NA	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon11:c.G1174A:p.E392K,Prrc2a:NM_020027:exon11:c.G1174A:p.E392K"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9722123	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35200554	12A2p6	cell line	sgMsh2	35200554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	29	0	0	NA	exonic	Tnf	nonsynonymous SNV	"Tnf:NM_001278601:exon3:c.A251G:p.Q84R,Tnf:NM_013693:exon4:c.A299G:p.Q100R"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9750797	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35235699	12A2p6	cell line	sgMsh2	35235699	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	71	0	0	NA	exonic	Nfkbil1	nonsynonymous SNV	Nfkbil1:NM_010909:exon1:c.A8G:p.N3S	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9975657	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35344798	12A2p6	cell line	sgMsh2	35344798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	453	0	0	NA	exonic	H2-Q2	synonymous SNV	"H2-Q2:NM_001368740:exon4:c.T654C:p.G218G,H2-Q2:NM_010392:exon4:c.T654C:p.G218G"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.962555619	1	1.24E-09	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	35344959	12A2p6	cell line	sgMsh2	35344959	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	439	0	0	NA	exonic	H2-Q2	nonsynonymous SNV	"H2-Q2:NM_001368740:exon4:c.T815G:p.F272C,H2-Q2:NM_010392:exon4:c.T815G:p.F272C"	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	1.00E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35567593	12A2p6	cell line	sgMsh2	35567593	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	30	0	0	NA	exonic	2300002M23Rik	nonsynonymous SNV	2300002M23Rik:NM_175148:exon1:c.T40G:p.L14V	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9764031	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	35658255	12A2p6	cell line	sgMsh2	35658255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	23	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon25:c.A2553G:p.L851L	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.965485	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr17	35848547	12A2p6	cell line	sgMsh2	35848547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	134	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon5:c.A1818G:p.I606M	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.999928	TAC	nonsynonymous	ATAC	9	ATACATACA	NA
M7_p20	chr17	36909282	12A2p6	cell line	sgMsh2	36909282	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.612	130	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon8:c.A1089T:p.K363N	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	3	1	1	0.99991	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	36947603	12A2p6	cell line	sgMsh2	36947603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	30	0	0	NA	exonic	Rnf39	synonymous SNV	Rnf39:NM_001099632:exon4:c.T1026C:p.R342R	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9764031	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr17	37609922	12A2p6	cell line	sgMsh2	37609922	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	231	0	0	NA	exonic	Olfr115	synonymous SNV	Olfr115:NM_001011753:exon1:c.C834T:p.Y278Y	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.883121418	1	0.9986892	TGT	synonymous	NA	NA	NA	NA
M7_p20	chr17	37752250	12A2p6	cell line	sgMsh2	37752250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	812	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.T395C:p.I132T	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.962555619	1	1	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	38149113	12A2p6	cell line	sgMsh2	38149113	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	299	0	0	NA	exonic	Olfr133	nonsynonymous SNV	Olfr133:NM_146831:exon1:c.A524G:p.D175G	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	8.08E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	38275376	12A2p6	cell line	sgMsh2	38275376	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	230	0	0	NA	exonic	Olfr138	nonsynonymous SNV	Olfr138:NM_130868:exon1:c.G604T:p.V202L	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999997	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	38305350	12A2p6	cell line	sgMsh2	38305350	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	205	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.T110C:p.M37T	17qB1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999986	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	42666616	12A2p6	cell line	sgMsh2	42666616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	120	0	0	NA	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289500:exon6:c.T1835C:p.V612A,Adgrf4:NM_001289501:exon6:c.T1835C:p.V612A,Adgrf4:NM_030067:exon6:c.T1835C:p.V612A"	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998425	AAC	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr17	42666943	12A2p6	cell line	sgMsh2	42666943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	176	0	0	NA	exonic	Adgrf4	nonsynonymous SNV	"Adgrf4:NM_001289499:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289500:exon6:c.T1508C:p.I503T,Adgrf4:NM_001289501:exon6:c.T1508C:p.I503T,Adgrf4:NM_030067:exon6:c.T1508C:p.I503T"	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.939192619	1	0.9998135	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	43602838	12A2p6	cell line	sgMsh2	43602838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	126	0	0	NA	exonic	Pla2g7	nonsynonymous SNV	Pla2g7:NM_013737:exon8:c.G671A:p.R224K	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998874	AGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	44270494	12A2p6	cell line	sgMsh2	44270494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	49	0	0	NA	exonic	Clic5	nonsynonymous SNV	Clic5:NM_172621:exon5:c.T410C:p.L137P	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9917177	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	45517974	12A2p6	cell line	sgMsh2	45517974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	29	0	0	NA	exonic	Aars2	synonymous SNV	"Aars2:NM_001358000:exon15:c.A1113G:p.P371P,Aars2:NM_198608:exon16:c.A2193G:p.P731P"	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9750797	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr17	45539927	12A2p6	cell line	sgMsh2	45539927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	41	0	0	NA	exonic	Tcte1	synonymous SNV	Tcte1:NM_013688:exon4:c.T1128C:p.G376G	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9871049	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	45653595	12A2p6	cell line	sgMsh2	45653595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	85	0	0	NA	exonic	Capn11	nonsynonymous SNV	Capn11:NM_001013767:exon2:c.T178C:p.F60L	17qB3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9988859	AAG	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr17	46306692	12A2p6	cell line	sgMsh2	46306692	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	exonic	Abcc10	stopgain	"Abcc10:NM_145140:exon14:c.T3293A:p.L1098X,Abcc10:NM_001347396:exon15:c.T3416A:p.L1139X,Abcc10:NM_170680:exon15:c.T3416A:p.L1139X"	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9907467	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	46310187	12A2p6	cell line	sgMsh2	46310187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	113	0	0	NA	exonic	Abcc10	nonsynonymous SNV	"Abcc10:NM_145140:exon12:c.A2773G:p.T925A,Abcc10:NM_001347396:exon13:c.A2896G:p.T966A,Abcc10:NM_170680:exon13:c.A2896G:p.T966A"	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.803687216	1	0.8208514	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	46412683	12A2p6	cell line	sgMsh2	46412683	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	70	0	0	NA	exonic	Zfp318	nonsynonymous SNV	Zfp318:NM_207671:exon10:c.A5611C:p.S1871R	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.997426	AAG	nonsynonymous	AAGTA	10	AAGTAAAGTA	NA
M7_p20	chr17	46676762	12A2p6	cell line	sgMsh2	46676762	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	107	0	0	NA	exonic	Klhdc3	synonymous SNV	"Klhdc3:NM_001163729:exon8:c.G864A:p.P288P,Klhdc3:NM_027910:exon9:c.G864A:p.P288P"	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9996742	ACG	synonymous	NA	NA	NA	NA
M7_p20	chr17	46801303	12A2p6	cell line	sgMsh2	46801303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	41	0	0	NA	exonic	Bicral	synonymous SNV	Bicral:NM_001100452:exon11:c.G2970T:p.S990S	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9871049	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr17	47611064	12A2p6	cell line	sgMsh2	47611064	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	41	0	0	NA	exonic	Bysl	nonsynonymous SNV	Bysl:NM_016859:exon1:c.A108C:p.K36N	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.99993642	1	0.9870947	GTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr17	47786944	12A2p6	cell line	sgMsh2	47786944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	252	0	0	NA	exonic	Tfeb	nonsynonymous SNV	"Tfeb:NM_011549:exon3:c.T656C:p.I219T,Tfeb:NM_001161722:exon4:c.T479C:p.I160T,Tfeb:NM_001161723:exon4:c.T479C:p.I160T"	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	49488207	12A2p6	cell line	sgMsh2	49488207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	128	0	0	NA	exonic	Daam2	synonymous SNV	"Daam2:NM_001008231:exon8:c.C957T:p.H319H,Daam2:NM_001379371:exon8:c.C957T:p.H319H,Daam2:NM_001379372:exon8:c.C957T:p.H319H"	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9998993	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr17	53497553	12A2p6	cell line	sgMsh2	53497553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	54	0	0	NA	exonic	Rab5a	nonsynonymous SNV	Rab5a:NM_025887:exon3:c.C190A:p.L64I	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9937253	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	54284236	12A2p6	cell line	sgMsh2	54284236	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	195	0	0	NA	exonic	Slc5a7	stopgain	Slc5a7:NM_022025:exon6:c.A667T:p.K223X	17qC	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.971900819	1	0.9999871	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	55814243	12A2p6	cell line	sgMsh2	55814243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	164	0	0	NA	exonic	Adgre4	synonymous SNV	Adgre4:NM_139138:exon12:c.C1308T:p.L436L	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999866	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr17	56082293	12A2p6	cell line	sgMsh2	56082293	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	52	0	0	NA	exonic	Hdgfl2	stopgain	"Hdgfl2:NM_001304784:exon3:c.A166T:p.K56X,Hdgfl2:NM_001304785:exon3:c.A166T:p.K56X,Hdgfl2:NM_001331053:exon3:c.A166T:p.K56X,Hdgfl2:NM_008233:exon3:c.A166T:p.K56X"	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.992988	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	56279970	12A2p6	cell line	sgMsh2	56279970	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	33	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon8:c.T1076C:p.V359A	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.892466618	1	0.9424579	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	227	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999996	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	56808272	12A2p6	cell line	sgMsh2	56808272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	23	0	0	NA	exonic	Rfx2	synonymous SNV	"Rfx2:NM_009056:exon2:c.C46T:p.L16L,Rfx2:NM_027787:exon2:c.C46T:p.L16L"	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.965485	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr17	56853862	12A2p6	cell line	sgMsh2	56853862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	142	0	0	NA	exonic	Acsbg2	nonsynonymous SNV	Acsbg2:NM_001039114:exon8:c.T781G:p.S261A	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.883121418	1	0.9923629	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	57062728	12A2p6	cell line	sgMsh2	57062728	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	34	0	0	NA	exonic	Crb3	nonsynonymous SNV	"Crb3:NM_001347408:exon2:c.T35C:p.F12S,Crb3:NM_001359813:exon2:c.T35C:p.F12S,Crb3:NM_001359814:exon2:c.T35C:p.F12S,Crb3:NM_177638:exon2:c.T35C:p.F12S"	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9810433	TTT	nonsynonymous	GTTTG	10	GTTTGGTTTG	NA
M7_p20	chr17	57107100	12A2p6	cell line	sgMsh2	57107100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	81	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.T526A:p.Y176N	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.998607	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	57449994	12A2p6	cell line	sgMsh2	57449994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	77	0	0	NA	exonic	Adgre1	synonymous SNV	"Adgre1:NM_001355722:exon17:c.T2250C:p.S750S,Adgre1:NM_001355723:exon17:c.T2202C:p.S734S,Adgre1:NM_010130:exon17:c.T2250C:p.S750S"	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9982584	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr17	57521945	12A2p6	cell line	sgMsh2	57521945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	117	0	0	NA	exonic	Vmn2r120	nonsynonymous SNV	"Vmn2r120:NM_001385181:exon5:c.A1631G:p.N544S,Vmn2r120:NM_001104591:exon6:c.A1649G:p.N550S"	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.322409406	3	0.9991025	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	58102120	12A2p6	cell line	sgMsh2	58102120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	181	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon9:c.A1352G:p.H451R	17qD	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999948	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	64309493	12A2p6	cell line	sgMsh2	64309493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	304	0	0	NA	exonic	Pja2	nonsynonymous SNV	"Pja2:NM_001025309:exon4:c.A406G:p.T136A,Pja2:NM_144859:exon4:c.A406G:p.T136A"	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.976573419	1	4.91E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	64834280	12A2p6	cell line	sgMsh2	64834280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	113	0	0	NA	exonic	4930583I09Rik	synonymous SNV	4930583I09Rik:NM_030031:exon3:c.C246T:p.S82S	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9997671	GGC	synonymous	GGCT	8	GGCTGGCT	NA
M7_p20	chr17	66148789	12A2p6	cell line	sgMsh2	66148789	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	141	0	0	NA	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon21:c.T2104C:p.S702P,Ddx11:NM_001348292:exon21:c.T2182C:p.S728P"	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999513	GTC	nonsynonymous	TGTC	8	TGTCTGTC	NA
M7_p20	chr17	67738873	12A2p6	cell line	sgMsh2	67738873	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	146	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.C772G:p.P258A	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.738270815	2	0.8287047	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	67748052	12A2p6	cell line	sgMsh2	67748052	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	25	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon11:c.T1452C:p.V484V	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9690252	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr17	67871951	12A2p6	cell line	sgMsh2	67871951	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	71	0	0	NA	exonic	Arhgap28	nonsynonymous SNV	"Arhgap28:NM_001347410:exon8:c.T914G:p.L305R,Arhgap28:NM_172964:exon8:c.T1064G:p.L355R"	17qE1.1	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.827050216	1	0.09725313	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	68461485	12A2p6	cell line	sgMsh2	68461485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	227	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.T587C:p.M196T	17qE1.2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	71716495	12A2p6	cell line	sgMsh2	71716495	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	36	0	0	NA	exonic	Togaram2	nonsynonymous SNV	Togaram2:NM_177087:exon17:c.T2345C:p.L782P	17qE1.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.742943415	1	0.7691908	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	71885398	12A2p6	cell line	sgMsh2	71885398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	100	0	0	NA	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon25:c.A3805G:p.I1269V	17qE1.3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9995182	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	74447996	12A2p6	cell line	sgMsh2	74447996	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	70	0	0	NA	exonic	Nlrc4	frameshift deletion	Nlrc4:NM_001033367:exon3:c.224delA:p.N75Tfs*9	17qE2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7_p20	chr17	74596951	12A2p6	cell line	sgMsh2	74596951	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	90	0	0	NA	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon15:c.T3738C:p.R1246R	17qE2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.981246019	1	0.9985827	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr17	74596969	12A2p6	cell line	sgMsh2	74596969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	95	0	0	NA	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon15:c.A3756G:p.P1252P	17qE2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9993628	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr17	74612081	12A2p6	cell line	sgMsh2	74612081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	129	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon28:c.T5905C:p.Y1969H	17qE2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999048	GTA	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr17	74729965	12A2p6	cell line	sgMsh2	74729965	C	G	SNV	Mutect2;Vardict	2	0.025	195	0	0	NA	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon5:c.C632G:p.A211G	17qE2	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.116815002	3	1	GCC	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr17	78934740	12A2p6	cell line	sgMsh2	78934740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	165	0	0	NA	exonic	Cebpz	nonsynonymous SNV	Cebpz:NM_001024806:exon2:c.C1484T:p.P495L	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999873	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	80181649	12A2p6	cell line	sgMsh2	80181649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	177	0	0	NA	exonic	Galm	synonymous SNV	Galm:NM_176963:exon5:c.T723C:p.G241G	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.813032416	1	0.8501983	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr17	80238795	12A2p6	cell line	sgMsh2	80238795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.616	19	0	0	NA	exonic	Dhx57	nonsynonymous SNV	"Dhx57:NM_198942:exon23:c.A4000G:p.T1334A,Dhx57:NM_001163759:exon24:c.A4159G:p.T1387A"	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	3	1	1	0.9571948	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	80368242	12A2p6	cell line	sgMsh2	80368242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	226	0	0	NA	exonic	Arhgef33	nonsynonymous SNV	Arhgef33:NM_001145452:exon12:c.A1219G:p.I407V	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999996	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	80615070	12A2p6	cell line	sgMsh2	80615070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	122	0	0	NA	exonic	Map4k3	nonsynonymous SNV	"Map4k3:NM_001290345:exon20:c.T1421A:p.V474D,Map4k3:NM_001360278:exon20:c.T1391A:p.V464D"	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.920502218	1	0.9972026	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	80629329	12A2p6	cell line	sgMsh2	80629329	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	141	0	0	NA	exonic	Map4k3	frameshift deletion	Map4k3:NM_001290345:exon15:c.1076delT:p.F359Sfs*18	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr17	81026905	12A2p6	cell line	sgMsh2	81026905	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	141	0	0	NA	exonic	Thumpd2	nonsynonymous SNV	Thumpd2:NM_028138:exon10:c.A1253C:p.D418A	17qE3	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999513	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	83221013	12A2p6	cell line	sgMsh2	83221013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	33	0	0	NA	exonic	Pkdcc	synonymous SNV	Pkdcc:NM_134117:exon3:c.G810A:p.P270P	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9799748	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr17	83221077	12A2p6	cell line	sgMsh2	83221077	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.447	40	0	0	NA	exonic	Pkdcc	frameshift deletion	Pkdcc:NM_134117:exon3:c.874delA:p.V293fs*0	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr17	83588212	12A2p6	cell line	sgMsh2	83588212	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.159	150	0	0	NA	exonic	Kcng3	nonsynonymous SNV	Kcng3:NM_153512:exon2:c.A824G:p.N275S	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.742943415	2	0.8114576	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	85046739	12A2p6	cell line	sgMsh2	85046739	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	157	0	0	NA	exonic	Slc3a1	nonsynonymous SNV	Slc3a1:NM_009205:exon5:c.T989C:p.V330A	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9999801	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	86168897	12A2p6	cell line	sgMsh2	86168897	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	35	0	0	NA	exonic	Prkce	nonsynonymous SNV	Prkce:NM_011104:exon1:c.T305A:p.F102Y	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	1	0.9820559	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	87135223	12A2p6	cell line	sgMsh2	87135223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	72	0	0	NA	exonic	Socs5	synonymous SNV	Socs5:NM_019654:exon3:c.A1590C:p.R530R	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9976978	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.481	30	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M7_p20	chr17	87685530	12A2p6	cell line	sgMsh2	87685530	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.082	94	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon5:c.T886C:p.F296L	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.383153208	3	0.8472052	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	87712647	12A2p6	cell line	sgMsh2	87712647	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	159	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon11:c.T1680A:p.N560K	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	0.256993005	3	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	87975164	12A2p6	cell line	sgMsh2	87975164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	27	0	0	NA	exonic	Msh6	nonsynonymous SNV	Msh6:NM_010830:exon1:c.A16G:p.T6A	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9722123	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	88011301	12A2p6	cell line	sgMsh2	88011301	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	299	0	0	NA	exonic	Fbxo11	nonsynonymous SNV	"Fbxo11:NM_001081034:exon6:c.A802G:p.N268D,Fbxo11:NM_001348248:exon6:c.A541G:p.N181D,Fbxo11:NM_001379303:exon6:c.A799G:p.N267D,Fbxo11:NM_001379304:exon6:c.A541G:p.N181D,Fbxo11:NM_001379305:exon6:c.A538G:p.N180D"	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	8.08E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	88635346	12A2p6	cell line	sgMsh2	88635346	C	-	Deletion	Strelka2;Vardict	2	0.2222	27	0	0	NA	exonic	Ston1	frameshift deletion	Ston1:NM_029858:exon2:c.179delC:p.L62Cfs*154	17qE4	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	NA	NA	ACC	frameshift	CAG	8	CAGCAGCA	-1
M7_p20	chr17	90565439	12A2p6	cell line	sgMsh2	90565439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	97	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon13:c.A3059G:p.K1020R,Nrxn1:NM_177284:exon14:c.A3074G:p.K1025R,Nrxn1:NM_020252:exon16:c.A3110G:p.K1037R"	17qE5	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9994302	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr17	90643161	12A2p6	cell line	sgMsh2	90643161	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	101	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346957:exon7:c.C1565G:p.A522G,Nrxn1:NM_177284:exon7:c.C1553G:p.A518G,Nrxn1:NM_020252:exon9:c.C1589G:p.A530G"	17qE5	chr17-15053144-94740433	4	3	1	0.9	4.205340083	NA	1	1	1	0.9995444	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	4343023	12A2p6	cell line	sgMsh2	4343023	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	91	0	0	NA	exonic	Map3k8	nonsynonymous SNV	Map3k8:NM_007746:exon3:c.T503C:p.L168P	18qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	5211194	12A2p6	cell line	sgMsh2	5211194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	66	0	0	NA	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon5:c.A1843G:p.T615A,Zfp438:NM_178722:exon5:c.A1843G:p.T615A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9967828	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	5214851	12A2p6	cell line	sgMsh2	5214851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	182	0	0	NA	exonic	Zfp438	nonsynonymous SNV	"Zfp438:NM_001360447:exon4:c.A106G:p.T36A,Zfp438:NM_178722:exon4:c.A106G:p.T36A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999951	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	5766453	12A2p6	cell line	sgMsh2	5766453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	150	0	0	NA	exonic	Zeb1	synonymous SNV	"Zeb1:NM_001360982:exon6:c.T795C:p.L265L,Zeb1:NM_011546:exon6:c.T963C:p.L321L,Zeb1:NM_001360981:exon7:c.T912C:p.L304L"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999634	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr18	6220979	12A2p6	cell line	sgMsh2	6220979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	163	0	0	NA	exonic	Kif5b	synonymous SNV	Kif5b:NM_008448:exon12:c.T1128C:p.I376I	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999858	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr18	7288548	12A2p6	cell line	sgMsh2	7288548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	0	0	NA	exonic	Armc4	synonymous SNV	Armc4:NM_001357492:exon4:c.A318G:p.Q106Q	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.999109	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr18	7355046	12A2p6	cell line	sgMsh2	7355046	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	276	0	0	NA	exonic	Mpp7	frameshift deletion	"Mpp7:NM_001081287:exon15:c.1379delA:p.K460Rfs*11,Mpp7:NM_001360860:exon16:c.1379delA:p.K460Rfs*11"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr18	7403267	12A2p6	cell line	sgMsh2	7403267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	125	0	0	NA	exonic	Mpp7	nonsynonymous SNV	"Mpp7:NM_001081287:exon12:c.A1042G:p.T348A,Mpp7:NM_001161620:exon12:c.A1042G:p.T348A,Mpp7:NM_001360860:exon13:c.A1042G:p.T348A"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998809	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	7921477	12A2p6	cell line	sgMsh2	7921477	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	220	0	0	NA	exonic	Wac	nonsynonymous SNV	"Wac:NM_001146298:exon11:c.A1303C:p.T435P,Wac:NM_001282093:exon12:c.A1477C:p.T493P,Wac:NM_001360956:exon12:c.A1477C:p.T493P,Wac:NM_153085:exon12:c.A1612C:p.T538P"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	AAC	nonsynonymous	CAACTG	12	CAACTGCAACTG	NA
M7_p20	chr18	9214215	12A2p6	cell line	sgMsh2	9214215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	exonic	Fzd8	nonsynonymous SNV	Fzd8:NM_008058:exon1:c.A1296G:p.I432M	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990037	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	9280225	12A2p6	cell line	sgMsh2	9280225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	79	0	0	NA	exonic	Gjd4	synonymous SNV	Gjd4:NM_153086:exon2:c.T852C:p.A284A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.556039411	2	0.9867774	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr18	12189263	12A2p6	cell line	sgMsh2	12189263	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	105	0	0	NA	exonic	Rmc1	frameshift deletion	Rmc1:NM_029623:exon19:c.1772delT:p.S592Lfs*5	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.827050216	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	180	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.989895	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	13846514	12A2p6	cell line	sgMsh2	13846514	G	-	Deletion	Mutect2;Vardict	2	0.215	128	0	0	NA	exonic	Zfp521	frameshift deletion	"Zfp521:NM_001360804:exon4:c.841delC:p.L281Sfs*15,Zfp521:NM_145492:exon4:c.841delC:p.L281Sfs*15"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7_p20	chr18	14670358	12A2p6	cell line	sgMsh2	14670358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	121	0	0	NA	exonic	Ss18	nonsynonymous SNV	"Ss18:NM_001161369:exon3:c.T182C:p.L61P,Ss18:NM_001161370:exon3:c.T182C:p.L61P,Ss18:NM_001161371:exon3:c.T182C:p.L61P,Ss18:NM_009280:exon3:c.T182C:p.L61P"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9985611	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	20409613	12A2p6	cell line	sgMsh2	20409613	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	343	0	0	NA	exonic	Dsg1b	nonsynonymous SNV	Dsg1b:NM_181682:exon15:c.G3176T:p.S1059I	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.60E-09	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.573	145	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999611	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	20720135	12A2p6	cell line	sgMsh2	20720135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	184	0	0	NA	exonic	B4galt6	synonymous SNV	B4galt6:NM_019737:exon3:c.T240C:p.P80P	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9998614	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr18	21147800	12A2p6	cell line	sgMsh2	21147800	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	76	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.C1498A:p.L500M	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9981584	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	21148113	12A2p6	cell line	sgMsh2	21148113	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	143	0	0	NA	exonic	Garem1	synonymous SNV	Garem1:NM_001033445:exon4:c.C1185T:p.L395L	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.49529561	2	0.9989369	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr18	21148292	12A2p6	cell line	sgMsh2	21148292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	65	0	0	NA	exonic	Garem1	nonsynonymous SNV	Garem1:NM_001033445:exon4:c.A1006G:p.I336V	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	21565519	12A2p6	cell line	sgMsh2	21565519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	211	0	0	NA	exonic	Klhl14	nonsynonymous SNV	Klhl14:NM_001081403:exon5:c.G1236A:p.M412I	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.873776217	1	0.9964248	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	21565563	12A2p6	cell line	sgMsh2	21565563	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	171	0	0	NA	exonic	Klhl14	nonsynonymous SNV	Klhl14:NM_001081403:exon5:c.C1192T:p.R398W	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.770979015	2	0.6157237	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	22105622	12A2p6	cell line	sgMsh2	22105622	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	82	0	0	NA	exonic	Ccdc178	nonsynonymous SNV	Ccdc178:NM_027616:exon11:c.G937T:p.G313C	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	22434636	12A2p6	cell line	sgMsh2	22434636	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	130	0	0	NA	exonic	Asxl3	synonymous SNV	Asxl3:NM_001167777:exon6:c.A270G:p.V90V	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.761633815	2	0.5604014	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr18	22769784	12A2p6	cell line	sgMsh2	22769784	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	247	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon8:c.T1169C:p.L390P,Nol4:NM_001347509:exon8:c.T1388C:p.L463P,Nol4:NM_001361223:exon9:c.T923C:p.L308P"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.929847418	1	0.9999728	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	190	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.9999629	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	23646896	12A2p6	cell line	sgMsh2	23646896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	78	0	0	NA	exonic	Dtna	nonsynonymous SNV	"Dtna:NM_001285817:exon17:c.A1741G:p.S581G,Dtna:NM_001361215:exon17:c.A1741G:p.S581G,Dtna:NM_001285808:exon18:c.A1762G:p.S588G,Dtna:NM_001285810:exon18:c.A1750G:p.S584G,Dtna:NM_001361216:exon18:c.A1741G:p.S581G,Dtna:NM_001361217:exon18:c.A1741G:p.S581G,Dtna:NM_207650:exon18:c.A1741G:p.S581G,Dtna:NM_001285813:exon19:c.A1750G:p.S584G,Dtna:NM_001285807:exon22:c.A1933G:p.S645G"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9983529	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	24679789	12A2p6	cell line	sgMsh2	24679789	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	77	0	0	NA	exonic	Mocos	nonsynonymous SNV	Mocos:NM_026779:exon8:c.T1739A:p.I580N	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.738270815	1	0.5337151	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	25140584	12A2p6	cell line	sgMsh2	25140584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	288	0	0	NA	exonic	Tpgs2	nonsynonymous SNV	"Tpgs2:NM_001004361:exon6:c.A519G:p.I173M,Tpgs2:NM_001142697:exon6:c.A378G:p.I126M,Tpgs2:NM_001142698:exon6:c.A519G:p.I173M"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.41E-08	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	31698534	12A2p6	cell line	sgMsh2	31698534	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	206	0	0	NA	exonic	Sap130	synonymous SNV	"Sap130:NM_001357554:exon16:c.A2076G:p.K692K,Sap130:NM_001357555:exon16:c.A2133G:p.K711K,Sap130:NM_172965:exon16:c.A2073G:p.K691K"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr18	31887733	12A2p6	cell line	sgMsh2	31887733	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	57	0	0	NA	exonic	Wdr33	nonsynonymous SNV	Wdr33:NM_028866:exon15:c.A1555C:p.N519H	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9946893	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	34312372	12A2p6	cell line	sgMsh2	34312372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	229	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2143G:p.I715V,Apc:NM_007462:exon16:c.A2320G:p.I774V,Apc:NM_001360980:exon17:c.A2374G:p.I792V"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	34312898	12A2p6	cell line	sgMsh2	34312898	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	285	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2669G:p.Y890C,Apc:NM_007462:exon16:c.A2846G:p.Y949C,Apc:NM_001360980:exon17:c.A2900G:p.Y967C"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.65E-08	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	34317049	12A2p6	cell line	sgMsh2	34317049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	105	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A6820G:p.R2274G,Apc:NM_007462:exon16:c.A6997G:p.R2333G,Apc:NM_001360980:exon17:c.A7051G:p.R2351G"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8262309	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	34425065	12A2p6	cell line	sgMsh2	34425065	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	135	0	0	NA	exonic	Pkd2l2	nonsynonymous SNV	"Pkd2l2:NM_001163004:exon6:c.T796C:p.F266L,Pkd2l2:NM_016927:exon6:c.T796C:p.F266L"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	34905059	12A2p6	cell line	sgMsh2	34905059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	89	0	0	NA	exonic	Etf1	nonsynonymous SNV	Etf1:NM_144866:exon11:c.T1243C:p.Y415H	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9869633	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	35152663	12A2p6	cell line	sgMsh2	35152663	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	105	0	0	NA	exonic	Ctnna1	nonsynonymous SNV	Ctnna1:NM_009818:exon2:c.A61G:p.R21G	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9969707	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	35581231	12A2p6	cell line	sgMsh2	35581231	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	98	0	0	NA	exonic	Matr3	nonsynonymous SNV	Matr3:NM_010771:exon7:c.T1244C:p.L415P	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	36451119	12A2p6	cell line	sgMsh2	36451119	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	249	0	0	NA	exonic	Pfdn1	nonsynonymous SNV	Pfdn1:NM_026027:exon2:c.T161G:p.L54R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	36535583	12A2p6	cell line	sgMsh2	36535583	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	157	0	0	NA	exonic	Slc4a9	nonsynonymous SNV	"Slc4a9:NM_172830:exon15:c.G1999A:p.A667T,Slc4a9:NM_001271544:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271545:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271546:exon16:c.G2215A:p.A739T,Slc4a9:NM_001271547:exon16:c.G2215A:p.A739T"	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999801	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	36682671	12A2p6	cell line	sgMsh2	36682671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	96	0	0	NA	exonic	Slc35a4	nonsynonymous SNV	"Slc35a4:NM_026404:exon3:c.A553G:p.T185A,Slc35a4:NM_001083317:exon4:c.A553G:p.T185A,Slc35a4:NM_001360989:exon4:c.A553G:p.T185A"	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993975	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	36941375	12A2p6	cell line	sgMsh2	36941375	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	177	0	0	NA	exonic	Pcdha2	synonymous SNV	Pcdha2:NM_198117:exon1:c.T2058C:p.A686A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.266338205	3	2.20E-08	CTG	synonymous	TGC	8	TGCTGCTG	NA
M7_p20	chr18	36947985	12A2p6	cell line	sgMsh2	36947985	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	139	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.G1779A:p.A593A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999456	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr18	36999240	12A2p6	cell line	sgMsh2	36999240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	382	0	0	NA	exonic	Pcdha9	nonsynonymous SNV	Pcdha9:NM_138661:exon1:c.T1361C:p.V454A	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.07E-09	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
M7_p20	chr18	37010954	12A2p6	cell line	sgMsh2	37010954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	82	0	0	NA	exonic	Pcdha11	nonsynonymous SNV	Pcdha11:NM_009960:exon1:c.T97C:p.Y33H	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37012278	12A2p6	cell line	sgMsh2	37012278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	419	0	0	NA	exonic	Pcdha11	nonsynonymous SNV	Pcdha11:NM_009960:exon1:c.T1421C:p.F474S	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37144501	12A2p6	cell line	sgMsh2	37144501	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	35	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.C533T:p.A178V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9820559	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37144555	12A2p6	cell line	sgMsh2	37144555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	43	0	0	NA	exonic	Pcdhac2	nonsynonymous SNV	Pcdhac2:NM_001003672:exon1:c.T587C:p.L196P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9884537	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37302917	12A2p6	cell line	sgMsh2	37302917	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	352	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.G1935T:p.K645N	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.37E-09	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37308460	12A2p6	cell line	sgMsh2	37308460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	331	0	0	NA	exonic	Pcdhb4	synonymous SNV	Pcdhb4:NM_053129:exon1:c.T822C:p.Y274Y	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	2.18E-09	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr18	37309772	12A2p6	cell line	sgMsh2	37309772	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.223	274	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.A2134T:p.R712W	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	2.96E-08	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37336181	12A2p6	cell line	sgMsh2	37336181	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	220	0	0	NA	exonic	Pcdhb6	synonymous SNV	Pcdhb6:NM_053131:exon1:c.G2154A:p.R718R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.425206608	3	0.5166361	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr18	37402875	12A2p6	cell line	sgMsh2	37402875	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	271	0	0	NA	exonic	Pcdhb9	synonymous SNV	Pcdhb9:NM_053134:exon1:c.T1921C:p.L641L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	3.49E-08	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr18	37442601	12A2p6	cell line	sgMsh2	37442601	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	168	0	0	NA	exonic	Pcdhb13	nonsynonymous SNV	Pcdhb13:NM_053138:exon1:c.A31G:p.R11G	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999892	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37443677	12A2p6	cell line	sgMsh2	37443677	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.273	172	0	0	NA	exonic	Pcdhb13	synonymous SNV	Pcdhb13:NM_053138:exon1:c.A1107G:p.S369S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr18	37443679	12A2p6	cell line	sgMsh2	37443679	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.273	172	0	0	NA	exonic	Pcdhb13	nonsynonymous SNV	Pcdhb13:NM_053138:exon1:c.A1109C:p.D370A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37478269	12A2p6	cell line	sgMsh2	37478269	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	79	0	0	NA	exonic	Pcdhb16	frameshift deletion	Pcdhb16:NM_053141:exon1:c.281delA:p.K95Nfs*10	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr18	37478449	12A2p6	cell line	sgMsh2	37478449	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	192	0	0	NA	exonic	Pcdhb16	nonsynonymous SNV	Pcdhb16:NM_053141:exon1:c.C461A:p.P154H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37478954	12A2p6	cell line	sgMsh2	37478954	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	117	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A966G:p.A322A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998137	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr18	37479298	12A2p6	cell line	sgMsh2	37479298	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	370	0	0	NA	exonic	Pcdhb16	nonsynonymous SNV	Pcdhb16:NM_053141:exon1:c.A1310G:p.N437S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.13E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37479314	12A2p6	cell line	sgMsh2	37479314	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	416	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A1326G:p.V442V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr18	37515185	12A2p6	cell line	sgMsh2	37515185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	428	0	0	NA	exonic	Pcdhb21	nonsynonymous SNV	Pcdhb21:NM_053146:exon1:c.A1366G:p.T456A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9999978	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37663395	12A2p6	cell line	sgMsh2	37663395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	exonic	Pcdhga1	nonsynonymous SNV	Pcdhga1:NM_033584:exon1:c.A1451G:p.N484S	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37664102	12A2p6	cell line	sgMsh2	37664102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	152	0	0	NA	exonic	Pcdhga1	nonsynonymous SNV	Pcdhga1:NM_033584:exon1:c.T2158C:p.Y720H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.9999211	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37674769	12A2p6	cell line	sgMsh2	37674769	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	163	0	0	NA	exonic	Pcdhga3	synonymous SNV	Pcdhga3:NM_033586:exon1:c.C274T:p.L92L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999858	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	212	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999991	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37682066	12A2p6	cell line	sgMsh2	37682066	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	237	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.C1609T:p.R537C	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37716893	12A2p6	cell line	sgMsh2	37716893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	167	0	0	NA	exonic	Pcdhga7	nonsynonymous SNV	Pcdhga7:NM_033590:exon1:c.A1952G:p.H651R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.51398601	2	0.9999402	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37733348	12A2p6	cell line	sgMsh2	37733348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	196	0	0	NA	exonic	Pcdhgb5	nonsynonymous SNV	Pcdhgb5:NM_033577:exon1:c.A2195C:p.K732T	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999978	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37739233	12A2p6	cell line	sgMsh2	37739233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	158	0	0	NA	exonic	Pcdhga9	nonsynonymous SNV	Pcdhga9:NM_033592:exon1:c.T2114C:p.L705P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.9955605	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37742541	12A2p6	cell line	sgMsh2	37742541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	160	0	0	NA	exonic	Pcdhgb6	nonsynonymous SNV	Pcdhgb6:NM_033578:exon1:c.A301G:p.K101E	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37753480	12A2p6	cell line	sgMsh2	37753480	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	135	0	0	NA	exonic	Pcdhgb7	nonsynonymous SNV	Pcdhgb7:NM_033579:exon1:c.G1702A:p.D568N	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37758106	12A2p6	cell line	sgMsh2	37758106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	92	0	0	NA	exonic	Pcdhga11	synonymous SNV	Pcdhga11:NM_033594:exon1:c.A2166G:p.L722L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992465	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr18	37767458	12A2p6	cell line	sgMsh2	37767458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	70	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A1342G:p.N448D	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.997426	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	37768454	12A2p6	cell line	sgMsh2	37768454	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	61	0	0	NA	exonic	Pcdhga12	nonsynonymous SNV	Pcdhga12:NM_033595:exon1:c.A2338C:p.I780L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.761633815	1	0.7254226	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	38283912	12A2p6	cell line	sgMsh2	38283912	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	52	0	0	NA	exonic	Pcdh12	synonymous SNV	Pcdh12:NM_017378:exon1:c.A159G:p.L53L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9918551	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr18	38447702	12A2p6	cell line	sgMsh2	38447702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	182	0	0	NA	exonic	Ndfip1	nonsynonymous SNV	"Ndfip1:NM_001355749:exon3:c.T163C:p.Y55H,Ndfip1:NM_022996:exon3:c.T163C:p.Y55H"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.6025031	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	39296795	12A2p6	cell line	sgMsh2	39296795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	144	0	0	NA	exonic	Arhgap26	nonsynonymous SNV	"Arhgap26:NM_001361073:exon19:c.C1709T:p.T570M,Arhgap26:NM_001374831:exon19:c.C1709T:p.T570M,Arhgap26:NM_175164:exon19:c.C1709T:p.T570M"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	42101680	12A2p6	cell line	sgMsh2	42101680	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	60	0	0	NA	exonic	Sh3rf2	nonsynonymous SNV	"Sh3rf2:NM_001146299:exon2:c.C527T:p.A176V,Sh3rf2:NM_172966:exon2:c.C527T:p.A176V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.7770476	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	42250904	12A2p6	cell line	sgMsh2	42250904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	198	0	0	NA	exonic	Lars	synonymous SNV	Lars:NM_134137:exon4:c.A225G:p.A75A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.999998	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr18	43324394	12A2p6	cell line	sgMsh2	43324394	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	0	0	NA	exonic	Dpysl3	nonsynonymous SNV	"Dpysl3:NM_001136086:exon14:c.T1645G:p.S549A,Dpysl3:NM_001291455:exon14:c.T1990G:p.S664A,Dpysl3:NM_009468:exon14:c.T1651G:p.S551A"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	45685341	12A2p6	cell line	sgMsh2	45685341	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	135	0	0	NA	exonic	Kcnn2	nonsynonymous SNV	"Kcnn2:NM_080465:exon8:c.A1504G:p.I502V,Kcnn2:NM_001312905:exon11:c.A2329G:p.I777V"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999319	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	46262918	12A2p6	cell line	sgMsh2	46262918	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	187	0	0	NA	exonic	Pggt1b	nonsynonymous SNV	Pggt1b:NM_172627:exon3:c.A299G:p.Y100C	18qC	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.925174818	1	0.9997218	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	46290755	12A2p6	cell line	sgMsh2	46290755	T	-	Deletion	Strelka2;Vardict	2	0.6282	78	0	0	NA	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
M7_p20	chr18	46881476	12A2p6	cell line	sgMsh2	46881476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	256	0	0	NA	exonic	Lvrn	nonsynonymous SNV	Lvrn:NM_029008:exon9:c.T1640C:p.M547T	18qC	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999999	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	52488740	12A2p6	cell line	sgMsh2	52488740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	155	0	0	NA	exonic	Srfbp1	nonsynonymous SNV	Srfbp1:NM_026040:exon6:c.G872A:p.S291N	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999778	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	54895603	12A2p6	cell line	sgMsh2	54895603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	50	0	0	NA	exonic	Zfp608	nonsynonymous SNV	"Zfp608:NM_001360787:exon5:c.A2459G:p.Y820C,Zfp608:NM_175751:exon6:c.A3737G:p.Y1246C"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9921647	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	57275696	12A2p6	cell line	sgMsh2	57275696	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	72	0	0	NA	exonic	Megf10	nonsynonymous SNV	Megf10:NM_001001979:exon14:c.G1709T:p.S570I	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9976978	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	57912879	12A2p6	cell line	sgMsh2	57912879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	159	0	0	NA	exonic	Slc12a2	nonsynonymous SNV	Slc12a2:NM_009194:exon13:c.T2030C:p.L677P	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999822	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	58556666	12A2p6	cell line	sgMsh2	58556666	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	219	0	0	NA	exonic	Slc27a6	nonsynonymous SNV	Slc27a6:NM_001081072:exon1:c.C203A:p.P68Q	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	58572068	12A2p6	cell line	sgMsh2	58572068	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.252	34	0	0	NA	exonic	Slc27a6	frameshift insertion	Slc27a6:NM_001081072:exon2:c.522dupA:p.H176Tfs*25	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CCA	frameshift	NA	NA	NA	1
M7_p20	chr18	58609258	12A2p6	cell line	sgMsh2	58609258	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	156	0	0	NA	exonic	Slc27a6	nonsynonymous SNV	Slc27a6:NM_001081072:exon8:c.C1543T:p.R515C	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.999979	GCG	nonsynonymous	GTGTGC	12	GTGTGCGTGTGC	NA
M7_p20	chr18	60246315	12A2p6	cell line	sgMsh2	60246315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	123	0	0	NA	exonic	Gm4951	synonymous SNV	Gm4951:NM_001033767:exon3:c.G921A:p.K307K	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr18	60912385	12A2p6	cell line	sgMsh2	60912385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	61	0	0	NA	exonic	Arsi	nonsynonymous SNV	Arsi:NM_001038499:exon1:c.T146C:p.I49T	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9957493	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	61083359	12A2p6	cell line	sgMsh2	61083359	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	90	0	0	NA	exonic	Pdgfrb	synonymous SNV	"Pdgfrb:NM_001146268:exon23:c.T3276G:p.A1092A,Pdgfrb:NM_008809:exon23:c.T3273G:p.A1091A"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9991574	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr18	61311113	12A2p6	cell line	sgMsh2	61311113	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	51	0	0	NA	exonic	Ppargc1b	nonsynonymous SNV	"Ppargc1b:NM_133249:exon5:c.A978C:p.Q326H,Ppargc1b:NM_001364996:exon6:c.A1026C:p.Q342H"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9706767	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	62596213	12A2p6	cell line	sgMsh2	62596213	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	219	0	0	NA	exonic	Spink7	nonsynonymous SNV	Spink7:NM_001001803:exon1:c.A52G:p.N18D	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	63042454	12A2p6	cell line	sgMsh2	63042454	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	166	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon39:c.C5855G:p.A1952G	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.999988	GGC	nonsynonymous	GCTG	8	GCTGGCTG	NA
M7_p20	chr18	63070009	12A2p6	cell line	sgMsh2	63070009	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	122	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon31:c.A4559C:p.Q1520P	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998592	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	63106236	12A2p6	cell line	sgMsh2	63106236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	exonic	Piezo2	nonsynonymous SNV	Piezo2:NM_001039485:exon16:c.T2272C:p.Y758H	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	67218523	12A2p6	cell line	sgMsh2	67218523	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	185	0	0	NA	exonic	Gnal	nonsynonymous SNV	"Gnal:NM_010307:exon11:c.A951T:p.E317D,Gnal:NM_177137:exon11:c.A1152T:p.E384D"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	67306706	12A2p6	cell line	sgMsh2	67306706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	95	0	0	NA	exonic	Impa2	nonsynonymous SNV	Impa2:NM_053261:exon3:c.A272G:p.K91R	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.691544814	2	0.8429838	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	67623224	12A2p6	cell line	sgMsh2	67623224	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	137	0	0	NA	exonic	Cep76	synonymous SNV	"Cep76:NM_001081073:exon10:c.A1536G:p.P512P,Cep76:NM_001357523:exon10:c.A1002G:p.P334P"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999391	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr18	68314063	12A2p6	cell line	sgMsh2	68314063	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.294	219	0	0	NA	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.T1017A:p.N339K,Rnmt:NM_026440:exon7:c.T1017A:p.N339K,Rnmt:NM_001361002:exon8:c.T1017A:p.N339K"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	68314065	12A2p6	cell line	sgMsh2	68314065	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.294	219	0	0	NA	exonic	Rnmt	nonsynonymous SNV	"Rnmt:NM_001361003:exon7:c.A1019C:p.Y340S,Rnmt:NM_026440:exon7:c.A1019C:p.Y340S,Rnmt:NM_001361002:exon8:c.A1019C:p.Y340S"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	71446395	12A2p6	cell line	sgMsh2	71446395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	79	0	0	NA	exonic	Dcc	synonymous SNV	Dcc:NM_007831:exon14:c.T2106C:p.N702N	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9984424	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr18	71809108	12A2p6	cell line	sgMsh2	71809108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	222	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon5:c.A937G:p.T313A	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	73739145	12A2p6	cell line	sgMsh2	73739145	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	117	0	0	NA	exonic	Elac1	nonsynonymous SNV	Elac1:NM_053255:exon4:c.G778A:p.G260R	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.999779	CCG	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr18	73930922	12A2p6	cell line	sgMsh2	73930922	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	29	0	0	NA	exonic	Mapk4	nonsynonymous SNV	"Mapk4:NM_001360936:exon5:c.T691A:p.S231T,Mapk4:NM_172632:exon6:c.T1228A:p.S410T"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9750797	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	73937142	12A2p6	cell line	sgMsh2	73937142	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	101	0	0	NA	exonic	Mapk4	frameshift deletion	"Mapk4:NM_001360936:exon2:c.142delA:p.M48Cfs*15,Mapk4:NM_172632:exon3:c.679delA:p.M227Cfs*15"	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr18	74949253	12A2p6	cell line	sgMsh2	74949253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	28	0	0	NA	exonic	Lipg	nonsynonymous SNV	Lipg:NM_010720:exon5:c.G598A:p.E200K	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	2	1	1	0.9736839	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	77254811	12A2p6	cell line	sgMsh2	77254811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	37	0	0	NA	exonic	St8sia5	nonsynonymous SNV	"St8sia5:NM_153124:exon7:c.A1108G:p.T370A,St8sia5:NM_013666:exon8:c.A1216G:p.T406A"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9839242	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	77286450	12A2p6	cell line	sgMsh2	77286450	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	128	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon2:c.G216T:p.G72G	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr18	77295884	12A2p6	cell line	sgMsh2	77295884	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	98	0	0	NA	exonic	Loxhd1	synonymous SNV	Loxhd1:NM_172834:exon4:c.C478T:p.L160L	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr18	78120159	12A2p6	cell line	sgMsh2	78120159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	86	0	0	NA	exonic	Slc14a1	nonsynonymous SNV	Slc14a1:NM_001171010:exon2:c.T136C:p.W46R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	1	1	0.9989464	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	78856858	12A2p6	cell line	sgMsh2	78856858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	59	0	0	NA	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A3593G:p.K1198R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.756961215	1	0.7153854	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	78858119	12A2p6	cell line	sgMsh2	78858119	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	70	0	0	NA	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A2332G:p.N778D	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.51865861	2	0.98256	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	78858793	12A2p6	cell line	sgMsh2	78858793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	76	0	0	NA	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A1658G:p.Y553C	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.993873	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	80446059	12A2p6	cell line	sgMsh2	80446059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	133	0	0	NA	exonic	Ctdp1	synonymous SNV	Ctdp1:NM_026295:exon10:c.T2217C:p.S739S	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9988838	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr18	89013091	12A2p6	cell line	sgMsh2	89013091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	67	0	0	NA	exonic	Rttn	nonsynonymous SNV	Rttn:NM_175542:exon14:c.T1925G:p.I642S	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr18	89113375	12A2p6	cell line	sgMsh2	89113375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	82	0	0	NA	exonic	Rttn	synonymous SNV	Rttn:NM_175542:exon44:c.T5877C:p.P1959P	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr18	89115505	12A2p6	cell line	sgMsh2	89115505	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	97	0	0	NA	exonic	Rttn	frameshift deletion	Rttn:NM_175542:exon45:c.6014delC:p.S2007Vfs*3	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr18	90524320	12A2p6	cell line	sgMsh2	90524320	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	138	0	0	NA	exonic	Tmx3	nonsynonymous SNV	Tmx3:NM_198295:exon8:c.A541G:p.T181A	18qE4	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAC	nonsynonymous	ATAC	8	ATACATAC	NA
M7_p20	chr19	3493957	12A2p6	cell line	sgMsh2	3493957	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	277	0	0	NA	exonic	Ppp6r3	nonsynonymous SNV	"Ppp6r3:NM_001164159:exon9:c.A1057T:p.S353C,Ppp6r3:NM_001360429:exon10:c.A1057T:p.S353C,Ppp6r3:NM_001360430:exon10:c.A1057T:p.S353C,Ppp6r3:NM_028999:exon10:c.A1057T:p.S353C,Ppp6r3:NM_029456:exon10:c.A1057T:p.S353C"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	3620251	12A2p6	cell line	sgMsh2	3620251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	184	0	0	NA	exonic	Lrp5	nonsynonymous SNV	Lrp5:NM_008513:exon9:c.A1852C:p.T618P	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	3896271	12A2p6	cell line	sgMsh2	3896271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	46	0	0	NA	exonic	Tcirg1	nonsynonymous SNV	"Tcirg1:NM_001136091:exon19:c.T2425C:p.W809R,Tcirg1:NM_001167784:exon19:c.T2425C:p.W809R,Tcirg1:NM_016921:exon19:c.T2425C:p.W809R"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	3896637	12A2p6	cell line	sgMsh2	3896637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	143	0	0	NA	exonic	Tcirg1	synonymous SNV	"Tcirg1:NM_001136091:exon18:c.T2215C:p.L739L,Tcirg1:NM_001167784:exon18:c.T2215C:p.L739L,Tcirg1:NM_016921:exon18:c.T2215C:p.L739L"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr19	4324783	12A2p6	cell line	sgMsh2	4324783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	46	0	0	NA	exonic	Kdm2a	synonymous SNV	Kdm2a:NM_001001984:exon17:c.A2319G:p.V773V	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr19	4450930	12A2p6	cell line	sgMsh2	4450930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	222	0	0	NA	exonic	Syt12	nonsynonymous SNV	Syt12:NM_134164:exon7:c.A1091G:p.Q364R	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTG	nonsynonymous	CACCT	10	CACCTCACCT	NA
M7_p20	chr19	4617649	12A2p6	cell line	sgMsh2	4617649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	167	0	0	NA	exonic	Pcx	nonsynonymous SNV	"Pcx:NM_008797:exon11:c.T1438C:p.F480L,Pcx:NM_001162946:exon12:c.T1441C:p.F481L"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.805	59	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	4864044	12A2p6	cell line	sgMsh2	4864044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	134	0	0	NA	exonic	Actn3	nonsynonymous SNV	Actn3:NM_013456:exon15:c.A1784G:p.Y595C	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5039797	12A2p6	cell line	sgMsh2	5039797	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	74	0	0	NA	exonic	B4gat1	nonsynonymous SNV	B4gat1:NM_175383:exon1:c.A821C:p.E274A	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5098235	12A2p6	cell line	sgMsh2	5098235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	17	0	0	NA	exonic	Cnih2	nonsynonymous SNV	Cnih2:NM_009920:exon1:c.A29G:p.Y10C	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5390984	12A2p6	cell line	sgMsh2	5390984	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.615	39	0	0	NA	exonic	Tsga10ip	nonsynonymous SNV	Tsga10ip:NM_001373978:exon6:c.A1322G:p.Y441C	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5422967	12A2p6	cell line	sgMsh2	5422967	-	G	Insertion	Strelka2;Vardict	2	0.1692	65	0	0	NA	exonic	Drap1	frameshift insertion	"Drap1:NM_001291080:exon7:c.591dupC:p.G198Rfs*9,Drap1:NM_024176:exon7:c.570dupC:p.G191Rfs*9"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CCG	frameshift	G	5	GGGGG	1
M7_p20	chr19	5426195	12A2p6	cell line	sgMsh2	5426195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	74	0	0	NA	exonic	AI837181	nonsynonymous SNV	AI837181:NM_134149:exon2:c.T385C:p.Y129H	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5655062	12A2p6	cell line	sgMsh2	5655062	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	70	0	0	NA	exonic	Sipa1	nonsynonymous SNV	"Sipa1:NM_001164482:exon8:c.T1504C:p.F502L,Sipa1:NM_001164568:exon8:c.T1504C:p.F502L,Sipa1:NM_001164480:exon9:c.T1504C:p.F502L,Sipa1:NM_011379:exon9:c.T1504C:p.F502L,Sipa1:NM_001164481:exon10:c.T1504C:p.F502L"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	187	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5702130	12A2p6	cell line	sgMsh2	5702130	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.116	68	0	0	NA	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2339G:p.D780G	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5757950	12A2p6	cell line	sgMsh2	5757950	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	100	0	0	NA	exonic	Ltbp3	nonsynonymous SNV	Ltbp3:NM_008520:exon28:c.A3620C:p.E1207A	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5766276	12A2p6	cell line	sgMsh2	5766276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	138	0	0	NA	exonic	Scyl1	nonsynonymous SNV	"Scyl1:NM_001361921:exon6:c.T890A:p.L297Q,Scyl1:NM_001361922:exon6:c.T890A:p.L297Q,Scyl1:NM_023912:exon6:c.T890A:p.L297Q"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5940924	12A2p6	cell line	sgMsh2	5940924	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	38	0	0	NA	exonic	Pola2	nonsynonymous SNV	Pola2:NM_008893:exon18:c.A1741C:p.K581Q	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	5972998	12A2p6	cell line	sgMsh2	5972998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	167	0	0	NA	exonic	Slc22a20	synonymous SNV	Slc22a20:NM_198650:exon7:c.A1116G:p.V372V	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr19	6014449	12A2p6	cell line	sgMsh2	6014449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	47	0	0	NA	exonic	Capn1	nonsynonymous SNV	"Capn1:NM_001110504:exon2:c.A19G:p.T7A,Capn1:NM_007600:exon2:c.A19G:p.T7A"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6049233	12A2p6	cell line	sgMsh2	6049233	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	132	0	0	NA	exonic	Syvn1	stopgain	"Syvn1:NM_001164709:exon6:c.C511T:p.Q171X,Syvn1:NM_028769:exon6:c.C511T:p.Q171X"	19qA	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6112724	12A2p6	cell line	sgMsh2	6112724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	230	0	0	NA	exonic	Naaladl1	synonymous SNV	Naaladl1:NM_001009546:exon12:c.T1461C:p.S487S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.841068017	1	0.9742334	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr19	6117802	12A2p6	cell line	sgMsh2	6117802	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.214	23	0	0	NA	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.A785G:p.N262S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.99993642	1	0.96547	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6119936	12A2p6	cell line	sgMsh2	6119936	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	exonic	Snx15	nonsynonymous SNV	Snx15:NM_026912:exon8:c.G941A:p.R314H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.915829618	1	0.9916042	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6855474	12A2p6	cell line	sgMsh2	6855474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	25	0	0	NA	exonic	Ccdc88b	nonsynonymous SNV	Ccdc88b:NM_001081291:exon10:c.A959G:p.Y320C	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9690252	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6920185	12A2p6	cell line	sgMsh2	6920185	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	84	0	0	NA	exonic	Esrra	nonsynonymous SNV	Esrra:NM_007953:exon2:c.A203T:p.K68M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.822377616	1	0.8947855	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	6986435	12A2p6	cell line	sgMsh2	6986435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	157	0	0	NA	exonic	Vegfb	nonsynonymous SNV	"Vegfb:NM_001185164:exon3:c.T155C:p.V52A,Vegfb:NM_011697:exon3:c.T155C:p.V52A"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.537349011	2	0.9999813	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M7_p20	chr19	7097161	12A2p6	cell line	sgMsh2	7097161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	0	0	NA	exonic	Flrt1	nonsynonymous SNV	Flrt1:NM_201411:exon2:c.C20T:p.A7V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9989464	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	7613340	12A2p6	cell line	sgMsh2	7613340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	211	0	0	NA	exonic	Plaat5	synonymous SNV	"Plaat5:NM_001368696:exon2:c.T159C:p.S53S,Plaat5:NM_025731:exon2:c.T159C:p.S53S"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.640146213	2	0.9999306	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr19	8071840	12A2p6	cell line	sgMsh2	8071840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	639	0	0	NA	exonic	Slc22a28	nonsynonymous SNV	Slc22a28:NM_001013820:exon6:c.A1043G:p.N348S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.747616015	2	0.9999936	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	8386728	12A2p6	cell line	sgMsh2	8386728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	226	0	0	NA	exonic	Slc22a30	nonsynonymous SNV	Slc22a30:NM_177002:exon3:c.T583C:p.S195P	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.724253014	2	0.9894187	GAG	nonsynonymous	GGAG	8	GGAGGGAG	NA
M7_p20	chr19	8764999	12A2p6	cell line	sgMsh2	8764999	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	228	0	0	NA	exonic	Nxf1	synonymous SNV	"Nxf1:NM_001276704:exon10:c.T981C:p.C327C,Nxf1:NM_016813:exon10:c.T981C:p.C327C"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999996	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr19	8773595	12A2p6	cell line	sgMsh2	8773595	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	75	0	0	NA	exonic	Tmem179b	nonsynonymous SNV	Tmem179b:NM_026325:exon2:c.T194A:p.F65Y	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9980527	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	8778120	12A2p6	cell line	sgMsh2	8778120	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	0	0	NA	exonic	Taf6l	synonymous SNV	"Taf6l:NM_001177798:exon10:c.G873A:p.G291G,Taf6l:NM_146092:exon10:c.G948A:p.G316G"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9969573	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr19	8826653	12A2p6	cell line	sgMsh2	8826653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	262	0	0	NA	exonic	Hnrnpul2	nonsynonymous SNV	Hnrnpul2:NM_001081196:exon10:c.T1615C:p.Y539H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999975	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	8907247	12A2p6	cell line	sgMsh2	8907247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	132	0	0	NA	exonic	Ganab	nonsynonymous SNV	"Ganab:NM_001293621:exon5:c.T413C:p.V138A,Ganab:NM_008060:exon5:c.T413C:p.V138A"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.640146213	2	0.9946448	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	9003288	12A2p6	cell line	sgMsh2	9003288	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	203	0	0	NA	exonic	Ahnak	synonymous SNV	Ahnak:NM_009643:exon5:c.A1935G:p.E645E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.915829618	1	0.9997047	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr19	9004009	12A2p6	cell line	sgMsh2	9004009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	260	0	0	NA	exonic	Ahnak	nonsynonymous SNV	Ahnak:NM_009643:exon5:c.A2656G:p.M886V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.663509213	2	0.9999696	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	10101364	12A2p6	cell line	sgMsh2	10101364	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	83	0	0	NA	exonic	Fads2	synonymous SNV	Fads2:NM_019699:exon1:c.T66C:p.R22R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.49996821	2	0.9899341	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr19	10503010	12A2p6	cell line	sgMsh2	10503010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	229	0	0	NA	exonic	Sdhaf2	nonsynonymous SNV	Sdhaf2:NM_025333:exon4:c.A484C:p.K162Q	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	1	0.5806	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	10596385	12A2p6	cell line	sgMsh2	10596385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	343	0	0	NA	exonic	Tkfc	synonymous SNV	Tkfc:NM_145496:exon7:c.T663C:p.H221H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.453242209	2	0.9945556	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr19	10664259	12A2p6	cell line	sgMsh2	10664259	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	53	0	0	NA	exonic	Vwce	frameshift deletion	Vwce:NM_027913:exon20:c.2348delT:p.L784fs*0	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.845740617	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr19	10723153	12A2p6	cell line	sgMsh2	10723153	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	91	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon6:c.C986G:p.T329R	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.51398601	2	0.9959743	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	10726376	12A2p6	cell line	sgMsh2	10726376	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	218	0	0	NA	exonic	Cd5	nonsynonymous SNV	Cd5:NM_007650:exon3:c.A321C:p.Q107H	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.640146213	2	0.9999528	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	10940395	12A2p6	cell line	sgMsh2	10940395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	133	0	0	NA	exonic	Ptgdr2	nonsynonymous SNV	Ptgdr2:NM_009962:exon3:c.T275A:p.V92E	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.878448817	1	0.9889753	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	11283780	12A2p6	cell line	sgMsh2	11283780	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	352	0	0	NA	exonic	Ms4a5	frameshift deletion	Ms4a5:NM_183190:exon1:c.14delA:p.N5Mfs*45	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.836395417	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr19	11333263	12A2p6	cell line	sgMsh2	11333263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	218	0	0	NA	exonic	Ms4a7	nonsynonymous SNV	"Ms4a7:NM_001025610:exon2:c.T91C:p.Y31H,Ms4a7:NM_001276398:exon2:c.T190C:p.Y64H,Ms4a7:NM_027836:exon2:c.T91C:p.Y31H"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999993	TAT	nonsynonymous	TATG	9	TATGTATGT	NA
M7_p20	chr19	11557933	12A2p6	cell line	sgMsh2	11557933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	787	0	0	NA	exonic	Ms4a4d	nonsynonymous SNV	Ms4a4d:NM_025658:exon7:c.A594G:p.I198M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.700890014	2	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	12210204	12A2p6	cell line	sgMsh2	12210204	T	C	SNV	Mutect2;MuSe;Vardict	3	0.109	167	0	0	NA	exonic	Olfr1431	synonymous SNV	Olfr1431:NM_146414:exon1:c.T637C:p.L213L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.50931341	2	0.9999027	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr19	12422509	12A2p6	cell line	sgMsh2	12422509	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	403	0	0	NA	exonic	Olfr1441	synonymous SNV	Olfr1441:NM_146683:exon1:c.C199T:p.L67L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	2	0.7274092	TCT	synonymous	NA	NA	NA	NA
M7_p20	chr19	12778971	12A2p6	cell line	sgMsh2	12778971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	217	0	0	NA	exonic	Zfp91	nonsynonymous SNV	Zfp91:NM_053009:exon3:c.A508G:p.T170A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.878448817	1	0.9976355	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	13165429	12A2p6	cell line	sgMsh2	13165429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	588	0	0	NA	exonic	Olfr1461	synonymous SNV	Olfr1461:NM_146302:exon1:c.T414C:p.T138T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.728925614	2	0.9999993	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr19	13190834	12A2p6	cell line	sgMsh2	13190834	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	380	0	0	NA	exonic	Olfr1462	nonsynonymous SNV	Olfr1462:NM_146693:exon1:c.C166A:p.P56T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	2	0.6918506	CCC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr19	13364838	12A2p6	cell line	sgMsh2	13364838	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	251	0	0	NA	exonic	Olfr1467	nonsynonymous SNV	Olfr1467:NM_146691:exon1:c.T209G:p.F70C	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.761633815	2	0.9146858	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	13445599	12A2p6	cell line	sgMsh2	13445599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	994	0	0	NA	exonic	Olfr1471	nonsynonymous SNV	Olfr1471:NM_207132:exon1:c.A586G:p.T196A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	13453837	12A2p6	cell line	sgMsh2	13453837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	560	0	0	NA	exonic	Olfr1472	nonsynonymous SNV	Olfr1472:NM_146690:exon1:c.C679T:p.R227C	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.850413217	1	0.9994606	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	13454348	12A2p6	cell line	sgMsh2	13454348	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	840	0	0	NA	exonic	Olfr1472	synonymous SNV	Olfr1472:NM_146690:exon1:c.T168G:p.P56P	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.700890014	2	1.00E-09	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr19	13633547	12A2p6	cell line	sgMsh2	13633547	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	480	0	0	NA	exonic	Olfr1489	synonymous SNV	Olfr1489:NM_146635:exon1:c.T435C:p.G145G	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.733598215	2	0.9999739	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr19	13838751	12A2p6	cell line	sgMsh2	13838751	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	352	0	0	NA	exonic	Olfr1501	nonsynonymous SNV	Olfr1501:NM_146633:exon1:c.C421A:p.L141M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.873776217	1	0.9996732	AGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	13919786	12A2p6	cell line	sgMsh2	13919786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	558	0	0	NA	exonic	Olfr1505	synonymous SNV	Olfr1505:NM_001011850:exon1:c.C765T:p.L255L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.817705016	1	0.8670903	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	251	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.827050216	1	0.936569	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	16641572	12A2p6	cell line	sgMsh2	16641572	A	-	Deletion	Mutect2;Vardict	2	0.192	131	0	0	NA	exonic	Vps13a	frameshift deletion	Vps13a:NM_173028:exon63:c.8629delT:p.Y2877Mfs*19	19qA	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.897139218	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr19	16710305	12A2p6	cell line	sgMsh2	16710305	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.197	194	0	0	NA	exonic	Vps13a	frameshift insertion	Vps13a:NM_173028:exon26:c.2777dupT:p.L926Ffs*13	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.920502218	NA	NA	TCA	frameshift	A	5	AAAAA	1
M7_p20	chr19	16754360	12A2p6	cell line	sgMsh2	16754360	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	191	0	0	NA	exonic	Vps13a	nonsynonymous SNV	Vps13a:NM_173028:exon6:c.A387C:p.E129D	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.999997	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	18642183	12A2p6	cell line	sgMsh2	18642183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	184	0	0	NA	exonic	Nmrk1	synonymous SNV	Nmrk1:NM_145497:exon7:c.A399G:p.V133V	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.649491413	2	0.9994782	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr19	23350619	12A2p6	cell line	sgMsh2	23350619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	249	0	0	NA	exonic	Mamdc2	nonsynonymous SNV	Mamdc2:NM_174857:exon9:c.A1384G:p.K462E	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.621455812	2	0.999998	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	24272399	12A2p6	cell line	sgMsh2	24272399	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	62	0	0	NA	exonic	Fxn	nonsynonymous SNV	Fxn:NM_008044:exon3:c.A323C:p.E108A	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	1	0.9959796	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	25171612	12A2p6	cell line	sgMsh2	25171612	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	121	0	0	NA	exonic	Dock8	nonsynonymous SNV	Dock8:NM_028785:exon35:c.A4453G:p.T1485A	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9998511	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	25409129	12A2p6	cell line	sgMsh2	25409129	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	146	0	0	NA	exonic	Kank1	synonymous SNV	"Kank1:NM_001348180:exon5:c.G81A:p.K27K,Kank1:NM_181404:exon5:c.G81A:p.K27K"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.51865861	2	0.9998818	AGA	synonymous	AAAG	9	AAAGAAAGA	NA
M7_p20	chr19	25409764	12A2p6	cell line	sgMsh2	25409764	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	144	0	0	NA	exonic	Kank1	nonsynonymous SNV	"Kank1:NM_001348180:exon5:c.T716C:p.V239A,Kank1:NM_181404:exon5:c.T716C:p.V239A"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.411188808	3	0.695631	GTC	nonsynonymous	TCCG	8	TCCGTCCG	NA
M7_p20	chr19	26751894	12A2p6	cell line	sgMsh2	26751894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	55	0	0	NA	exonic	Smarca2	nonsynonymous SNV	"Smarca2:NM_001347439:exon3:c.A164G:p.N55S,Smarca2:NM_026003:exon4:c.A44G:p.N15S,Smarca2:NM_011416:exon28:c.A4085G:p.N1362S"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.813032416	1	0.8753444	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	299	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.770979015	2	0.9133403	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr19	29311810	12A2p6	cell line	sgMsh2	29311810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	261	0	0	NA	exonic	Jak2	nonsynonymous SNV	"Jak2:NM_001048177:exon24:c.C3361T:p.L1121F,Jak2:NM_008413:exon25:c.C3361T:p.L1121F"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.616783212	2	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	29373657	12A2p6	cell line	sgMsh2	29373657	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	308	0	0	NA	exonic	Cd274	nonsynonymous SNV	Cd274:NM_021893:exon3:c.T152G:p.L51R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.878448817	1	0.9995573	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	29639959	12A2p6	cell line	sgMsh2	29639959	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	186	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon3:c.T648C:p.C216C,Ermp1:NM_001362131:exon3:c.T648C:p.C216C"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.738270815	2	0.928818	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr19	30087253	12A2p6	cell line	sgMsh2	30087253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	177	0	0	NA	exonic	Uhrf2	synonymous SNV	Uhrf2:NM_144873:exon12:c.T1848C:p.V616V	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.579402411	2	0.9999836	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr19	31920904	12A2p6	cell line	sgMsh2	31920904	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	538	0	0	NA	exonic	A1cf	synonymous SNV	"A1cf:NM_001081074:exon6:c.C687T:p.S229S,A1cf:NM_001365078:exon6:c.C687T:p.S229S"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.154195803	3	1	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr19	32159831	12A2p6	cell line	sgMsh2	32159831	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	225	0	0	NA	exonic	Sgms1	nonsynonymous SNV	"Sgms1:NM_001168526:exon2:c.G334A:p.G112R,Sgms1:NM_001168525:exon6:c.G334A:p.G112R,Sgms1:NM_001362423:exon6:c.G334A:p.G112R,Sgms1:NM_144792:exon6:c.G334A:p.G112R"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.794342016	1	0.5878967	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34039172	12A2p6	cell line	sgMsh2	34039172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	158	0	0	NA	exonic	Lipk	nonsynonymous SNV	"Lipk:NM_001205349:exon7:c.A799G:p.S267G,Lipk:NM_172837:exon7:c.A784G:p.S262G"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999812	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34236304	12A2p6	cell line	sgMsh2	34236304	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	539	0	0	NA	exonic	Stambpl1	nonsynonymous SNV	"Stambpl1:NM_001360720:exon4:c.T434C:p.V145A,Stambpl1:NM_001360716:exon8:c.T932C:p.V311A,Stambpl1:NM_001360718:exon8:c.T932C:p.V311A,Stambpl1:NM_001360719:exon8:c.T932C:p.V311A,Stambpl1:NM_029682:exon8:c.T932C:p.V311A,Stambpl1:NM_001360717:exon9:c.T932C:p.V311A"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.626128412	2	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34524751	12A2p6	cell line	sgMsh2	34524751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	287	0	0	NA	exonic	Lipa	nonsynonymous SNV	"Lipa:NM_001111100:exon2:c.T92C:p.V31A,Lipa:NM_021460:exon2:c.T92C:p.V31A"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.780324215	2	0.7943345	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Vardict	2	0.126	140	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.588747612	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M7_p20	chr19	34629749	12A2p6	cell line	sgMsh2	34629749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	534	0	0	NA	exonic	Ifit1bl2	nonsynonymous SNV	"Ifit1bl2:NM_001362130:exon1:c.T11C:p.L4P,Ifit1bl2:NM_053217:exon2:c.T11C:p.L4P"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.574729811	2	1	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34670785	12A2p6	cell line	sgMsh2	34670785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	303	0	0	NA	exonic	Slc16a12	nonsynonymous SNV	Slc16a12:NM_172838:exon7:c.T1307C:p.M436T	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	6.66E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	34950647	12A2p6	cell line	sgMsh2	34950647	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	138	0	0	NA	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon19:c.T3188C:p.L1063P,Kif20b:NM_183046:exon19:c.T3308C:p.L1103P"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	1	0.9999424	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	36601474	12A2p6	cell line	sgMsh2	36601474	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	266	0	0	NA	exonic	Hectd2	frameshift deletion	"Hectd2:NM_001163471:exon11:c.1134delA:p.I381Sfs*10,Hectd2:NM_172637:exon11:c.1131delA:p.I380Sfs*10"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.925174818	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7_p20	chr19	37698433	12A2p6	cell line	sgMsh2	37698433	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	91	0	0	NA	exonic	Cyp26a1	nonsynonymous SNV	Cyp26a1:NM_007811:exon2:c.A332G:p.H111R	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.733598215	2	0.5850055	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	37954506	12A2p6	cell line	sgMsh2	37954506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	219	0	0	NA	exonic	Myof	nonsynonymous SNV	"Myof:NM_001099634:exon22:c.A2123G:p.Q708R,Myof:NM_001302140:exon23:c.A2162G:p.Q721R"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.841068017	1	0.9722573	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	38097293	12A2p6	cell line	sgMsh2	38097293	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	133	0	0	NA	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T167C:p.L56P	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.883121418	1	0.9908808	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	38305778	12A2p6	cell line	sgMsh2	38305778	A	G	SNV	Mutect2;MuSe;Vardict	3	0.389	16	0	0	NA	exonic	Lgi1	nonsynonymous SNV	Lgi1:NM_020278:exon8:c.A997G:p.N333D	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	1	0.9497451	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	38795525	12A2p6	cell line	sgMsh2	38795525	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	567	0	0	NA	exonic	Noc3l	nonsynonymous SNV	Noc3l:NM_021315:exon16:c.T1738C:p.Y580H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.836395417	1	0.9941849	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	39031345	12A2p6	cell line	sgMsh2	39031345	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	153	0	0	NA	exonic	Cyp2c55	synonymous SNV	Cyp2c55:NM_028089:exon5:c.T726C:p.S242S	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.49062301	2	0.9988545	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr19	39087723	12A2p6	cell line	sgMsh2	39087723	A	G	SNV	Mutect2;MuSe;Vardict	3	0.109	509	0	0	NA	exonic	Cyp2c65	nonsynonymous SNV	Cyp2c65:NM_028191:exon7:c.A1118G:p.D373G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.50931341	2	1.01E-09	GAC	nonsynonymous	CGTGA	10	CGTGACGTGA	NA
M7_p20	chr19	39290827	12A2p6	cell line	sgMsh2	39290827	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	421	0	0	NA	exonic	Cyp2c29	nonsynonymous SNV	Cyp2c29:NM_007815:exon2:c.T267G:p.D89E	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	1.01E-09	ATC	nonsynonymous	TGAT	8	TGATTGAT	NA
M7_p20	chr19	40046198	12A2p6	cell line	sgMsh2	40046198	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	699	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon7:c.A1027C:p.S343R	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	1	CTC	nonsynonymous	TCCTG	10	TCCTGTCCTG	NA
M7_p20	chr19	41223141	12A2p6	cell line	sgMsh2	41223141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	252	0	0	NA	exonic	Tm9sf3	nonsynonymous SNV	Tm9sf3:NM_133352:exon10:c.A1262G:p.Q421R	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	42039911	12A2p6	cell line	sgMsh2	42039911	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	122	0	0	NA	exonic	Ankrd2	nonsynonymous SNV	Ankrd2:NM_020033:exon2:c.A149T:p.K50M	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.626128412	2	0.9945196	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	42414026	12A2p6	cell line	sgMsh2	42414026	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	186	0	0	NA	exonic	Crtac1	nonsynonymous SNV	"Crtac1:NM_001356588:exon2:c.T124G:p.Y42D,Crtac1:NM_001356589:exon2:c.T142G:p.Y48D,Crtac1:NM_145123:exon2:c.T142G:p.Y48D"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.915829618	1	0.9995087	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	42762166	12A2p6	cell line	sgMsh2	42762166	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.131	47	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon12:c.A1277G:p.Q426R,Hps1:NM_001346703:exon13:c.A1301G:p.Q434R,Hps1:NM_019424:exon13:c.A1277G:p.Q426R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.612110612	2	0.000864434	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	42767263	12A2p6	cell line	sgMsh2	42767263	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.155	114	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon6:c.A523G:p.I175V,Hps1:NM_001346703:exon7:c.A523G:p.I175V,Hps1:NM_019424:exon7:c.A523G:p.I175V"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.724253014	2	0.7817033	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	43493730	12A2p6	cell line	sgMsh2	43493730	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	84	0	0	NA	exonic	Cnnm1	nonsynonymous SNV	"Cnnm1:NM_031396:exon10:c.A2695T:p.N899Y,Cnnm1:NM_001373992:exon11:c.A2758T:p.N920Y"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	1	0.9988219	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	43717476	12A2p6	cell line	sgMsh2	43717476	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	134	0	0	NA	exonic	Entpd7	nonsynonymous SNV	Entpd7:NM_053103:exon8:c.T736G:p.S246A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.696217414	2	0.953334	CTC	nonsynonymous	CAG	9	CAGCAGCAG	NA
M7_p20	chr19	44059158	12A2p6	cell line	sgMsh2	44059158	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	268	0	0	NA	exonic	Erlin1	nonsynonymous SNV	"Erlin1:NM_145502:exon5:c.A323G:p.N108S,Erlin1:NM_001164359:exon6:c.A323G:p.N108S,Erlin1:NM_001164360:exon6:c.A323G:p.N108S"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.920502218	1	0.9999714	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	44153684	12A2p6	cell line	sgMsh2	44153684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	207	0	0	NA	exonic	Pkd2l1	nonsynonymous SNV	Pkd2l1:NM_181422:exon9:c.T1634C:p.V545A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.855085817	1	0.9874924	GAC	nonsynonymous	GAA	17	GAAGAAGACGAAGAAGA	NA
M7_p20	chr19	45049129	12A2p6	cell line	sgMsh2	45049129	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	111	0	0	NA	exonic	Sfxn3	nonsynonymous SNV	"Sfxn3:NM_001178012:exon2:c.T23G:p.I8S,Sfxn3:NM_001178013:exon2:c.T23G:p.I8S,Sfxn3:NM_001362381:exon2:c.T23G:p.I8S,Sfxn3:NM_053197:exon2:c.T23G:p.I8S"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9997395	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	45579743	12A2p6	cell line	sgMsh2	45579743	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	81	0	0	NA	exonic	Fbxw4	nonsynonymous SNV	Fbxw4:NM_013907:exon7:c.T881C:p.V294A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	3	1	1	0.998607	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	45749141	12A2p6	cell line	sgMsh2	45749141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	51	0	0	NA	exonic	Npm3	synonymous SNV	Npm3:NM_008723:exon2:c.T120C:p.G40G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.686872214	2	0.5071173	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr19	46004185	12A2p6	cell line	sgMsh2	46004185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	146	0	0	NA	exonic	Hps6	nonsynonymous SNV	Hps6:NM_176785:exon1:c.A560G:p.H187R	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.602765412	2	0.9995376	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	46083586	12A2p6	cell line	sgMsh2	46083586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	156	0	0	NA	exonic	Nolc1	nonsynonymous SNV	"Nolc1:NM_001039351:exon11:c.T1811C:p.V604A,Nolc1:NM_001039352:exon11:c.T1817C:p.V606A,Nolc1:NM_001039353:exon11:c.T1814C:p.V605A,Nolc1:NM_053086:exon11:c.T1814C:p.V605A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.429879209	2	0.6985602	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	46271825	12A2p6	cell line	sgMsh2	46271825	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	188	0	0	NA	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon26:c.A3331G:p.I1111V	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.747616015	2	0.8885858	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	46320954	12A2p6	cell line	sgMsh2	46320954	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	76	0	0	NA	exonic	Psd	synonymous SNV	"Psd:NM_001347454:exon7:c.C1566A:p.P522P,Psd:NM_028627:exon7:c.C1563A:p.P521P"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.841068017	1	0.9288806	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr19	47071000	12A2p6	cell line	sgMsh2	47071000	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	238	0	0	NA	exonic	Taf5	synonymous SNV	Taf5:NM_177342:exon2:c.A582G:p.E194E	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.672854413	2	0.9998268	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr19	47071070	12A2p6	cell line	sgMsh2	47071070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	324	0	0	NA	exonic	Taf5	nonsynonymous SNV	Taf5:NM_177342:exon2:c.T652C:p.Y218H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.747616015	2	0.9936809	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	47129189	12A2p6	cell line	sgMsh2	47129189	A	-	Deletion	Mutect2;Vardict	2	0.132	127	0	0	NA	exonic	Pdcd11	frameshift deletion	Pdcd11:NM_011053:exon33:c.4976delA:p.N1660Tfs*8	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.616783212	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr19	47133166	12A2p6	cell line	sgMsh2	47133166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	75	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon3:c.G563A:p.G188E	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9980527	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	47135722	12A2p6	cell line	sgMsh2	47135722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	144	0	0	NA	exonic	Calhm2	nonsynonymous SNV	Calhm2:NM_133746:exon2:c.T182C:p.I61T	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999588	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	97	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.621455812	2	0.9792841	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	303	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.668181813	2	0.999994	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	47733582	12A2p6	cell line	sgMsh2	47733582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	288	0	0	NA	exonic	Sfr1	nonsynonymous SNV	Sfr1:NM_026377:exon3:c.A436G:p.S146G	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.850413217	1	0.9923324	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	50228253	12A2p6	cell line	sgMsh2	50228253	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	326	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon14:c.A1887T:p.P629P,Sorcs1:NM_001290356:exon14:c.A1887T:p.P629P,Sorcs1:NM_001360457:exon14:c.A1887T:p.P629P,Sorcs1:NM_021377:exon14:c.A1887T:p.P629P"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.929847418	1	0.9999982	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr19	50232658	12A2p6	cell line	sgMsh2	50232658	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	482	0	0	NA	exonic	Sorcs1	synonymous SNV	"Sorcs1:NM_001252501:exon11:c.C1620T:p.I540I,Sorcs1:NM_001290356:exon11:c.C1620T:p.I540I,Sorcs1:NM_001360457:exon11:c.C1620T:p.I540I,Sorcs1:NM_021377:exon11:c.C1620T:p.I540I"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	1.00E-09	TGA	synonymous	NA	NA	NA	NA
M7_p20	chr19	50313026	12A2p6	cell line	sgMsh2	50313026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	133	0	0	NA	exonic	Sorcs1	nonsynonymous SNV	"Sorcs1:NM_001252501:exon5:c.C899T:p.A300V,Sorcs1:NM_001290356:exon5:c.C899T:p.A300V,Sorcs1:NM_001360457:exon5:c.C899T:p.A300V,Sorcs1:NM_021377:exon5:c.C899T:p.A300V"	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999239	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	55278125	12A2p6	cell line	sgMsh2	55278125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	148	0	0	NA	exonic	Acsl5	synonymous SNV	Acsl5:NM_027976:exon5:c.A375G:p.K125K	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.971900819	1	0.9998813	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr19	56371846	12A2p6	cell line	sgMsh2	56371846	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	85	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon12:c.A1048G:p.M350V,Nrap:NM_198059:exon13:c.A1291G:p.M431V,Nrap:NM_008733:exon14:c.A1396G:p.M466V"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.99993642	1	0.998884	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	56791006	12A2p6	cell line	sgMsh2	56791006	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	247	0	0	NA	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon16:c.T2711A:p.I904N	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.51865861	2	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	57685672	12A2p6	cell line	sgMsh2	57685672	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	108	0	0	NA	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon12:c.T1938A:p.N646K	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.691544814	2	0.8993863	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	58964462	12A2p6	cell line	sgMsh2	58964462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	79	0	0	NA	exonic	Eno4	nonsynonymous SNV	Eno4:NM_178689:exon11:c.A1432G:p.K478E	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.51398601	2	0.9908499	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	59235176	12A2p6	cell line	sgMsh2	59235176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	140	0	0	NA	exonic	Kcnk18	nonsynonymous SNV	Kcnk18:NM_207261:exon3:c.A752G:p.K251R	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.50931341	2	0.9996481	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	59300985	12A2p6	cell line	sgMsh2	59300985	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	242	0	0	NA	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.C1982A:p.P661H	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	2	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr19	59344995	12A2p6	cell line	sgMsh2	59344995	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.095	68	0	0	NA	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon1:c.A593G:p.N198S	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.205340083	NA	1	0.443897009	2	0.8552859	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	3329041	12A2p6	cell line	sgMsh2	3329041	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	206	0	0	NA	exonic	Rpp38	stopgain	Rpp38:NM_001013376:exon2:c.A823T:p.K275X	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999987	TTA	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr2	3498043	12A2p6	cell line	sgMsh2	3498043	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	229	0	0	NA	exonic	Hspa14	nonsynonymous SNV	"Hspa14:NM_001355397:exon7:c.A572G:p.Y191C,Hspa14:NM_015765:exon8:c.A713G:p.Y238C"	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	4995798	12A2p6	cell line	sgMsh2	4995798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	141	0	0	NA	exonic	Mcm10	nonsynonymous SNV	"Mcm10:NM_001305259:exon15:c.T2081C:p.V694A,Mcm10:NM_027290:exon15:c.T2081C:p.V694A"	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999513	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	5902496	12A2p6	cell line	sgMsh2	5902496	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	67	0	0	NA	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon15:c.T2408A:p.V803D	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.827050216	1	0.09816245	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	5973518	12A2p6	cell line	sgMsh2	5973518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	109	0	0	NA	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon4:c.T1192C:p.Y398H	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997087	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	9874866	12A2p6	cell line	sgMsh2	9874866	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.231	17	0	0	NA	exonic	Gata3	nonsynonymous SNV	"Gata3:NM_001355110:exon3:c.A298G:p.K100E,Gata3:NM_001355111:exon3:c.A298G:p.K100E,Gata3:NM_001355112:exon3:c.A298G:p.K100E,Gata3:NM_008091:exon3:c.A298G:p.K100E"	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9523583	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	10126177	12A2p6	cell line	sgMsh2	10126177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	232	0	0	NA	exonic	Itih2	nonsynonymous SNV	Itih2:NM_010582:exon4:c.A348C:p.K116N	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	10402049	12A2p6	cell line	sgMsh2	10402049	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	106	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon4:c.G158A:p.G53D,Sfmbt2:NM_001198809:exon4:c.G158A:p.G53D,Sfmbt2:NM_001369078:exon4:c.G158A:p.G53D,Sfmbt2:NM_177386:exon5:c.G158A:p.G53D"	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996555	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	11226873	12A2p6	cell line	sgMsh2	11226873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	175	0	0	NA	exonic	Prkcq	synonymous SNV	Prkcq:NM_008859:exon2:c.A6G:p.S2S	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999927	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	11751680	12A2p6	cell line	sgMsh2	11751680	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	218	0	0	NA	exonic	Fbh1	synonymous SNV	"Fbh1:NM_001348234:exon14:c.A1962G:p.G654G,Fbh1:NM_001348235:exon14:c.A1962G:p.G654G,Fbh1:NM_001348236:exon14:c.A1962G:p.G654G,Fbh1:NM_001348237:exon14:c.A1962G:p.G654G,Fbh1:NM_015792:exon14:c.A2184G:p.G728G"	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.271010805	3	1.48E-09	CTC	synonymous	CCAA	9	CCAACCAAC	NA
M7_p20	chr2	13444324	12A2p6	cell line	sgMsh2	13444324	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	154	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon21:c.A2939G:p.E980G	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999765	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	13456616	12A2p6	cell line	sgMsh2	13456616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	221	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon16:c.T2099C:p.L700P	2qA1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.766306415	2	0.8213857	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	14238248	12A2p6	cell line	sgMsh2	14238248	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	116	0	0	NA	exonic	Mrc1	nonsynonymous SNV	Mrc1:NM_008625:exon2:c.T184G:p.S62A	2qA2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.999803	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	16357184	12A2p6	cell line	sgMsh2	16357184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	113	0	0	NA	exonic	Plxdc2	nonsynonymous SNV	Plxdc2:NM_026162:exon1:c.T59C:p.F20S	2qA2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997671	TTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr2	20661917	12A2p6	cell line	sgMsh2	20661917	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	120	0	0	NA	exonic	Etl4	nonsynonymous SNV	"Etl4:NM_001177630:exon3:c.C374T:p.S125F,Etl4:NM_001177631:exon3:c.C374T:p.S125F,Etl4:NM_001369134:exon3:c.C374T:p.S125F,Etl4:NM_001081006:exon4:c.C527T:p.S176F,Etl4:NM_029895:exon4:c.C374T:p.S125F,Etl4:NM_178059:exon4:c.C374T:p.S125F"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998425	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	20859758	12A2p6	cell line	sgMsh2	20859758	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	152	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon17:c.A3654C:p.K1218N,Arhgap21:NM_001128084:exon18:c.A3684C:p.K1228N"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.799014616	1	0.7544672	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	22291860	12A2p6	cell line	sgMsh2	22291860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	208	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon7:c.T664A:p.W222R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.887794018	1	0.9984662	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	22399798	12A2p6	cell line	sgMsh2	22399798	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	38	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon18:c.A1964G:p.Q655R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9847852	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	22423310	12A2p6	cell line	sgMsh2	22423310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	124	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon20:c.T2377G:p.L793V	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998741	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	22826908	12A2p6	cell line	sgMsh2	22826908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	161	0	0	NA	exonic	Apbb1ip	nonsynonymous SNV	Apbb1ip:NM_019456:exon5:c.A521G:p.K174R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999596	AAG	nonsynonymous	GAAG	8	GAAGGAAG	NA
M7_p20	chr2	22895674	12A2p6	cell line	sgMsh2	22895674	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.75	4	0	0	NA	exonic	Pdss1	nonsynonymous SNV	"Pdss1:NM_001355467:exon1:c.G44T:p.R15M,Pdss1:NM_019501:exon1:c.G44T:p.R15M"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	3	1	1	0.0932602	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	23099671	12A2p6	cell line	sgMsh2	23099671	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	65	0	0	NA	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon9:c.T942A:p.N314K,Acbd5:NM_001102436:exon10:c.T1161A:p.N387K,Acbd5:NM_001102437:exon10:c.T1272A:p.N424K,Acbd5:NM_001102438:exon10:c.T1269A:p.N423K,Acbd5:NM_001355641:exon10:c.T975A:p.N325K,Acbd5:NM_028793:exon10:c.T1164A:p.N388K,Acbd5:NM_001355637:exon11:c.T1305A:p.N435K,Acbd5:NM_001355638:exon11:c.T1302A:p.N434K,Acbd5:NM_001355639:exon11:c.T1194A:p.N398K"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.976573419	1	0.9945703	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	23110710	12A2p6	cell line	sgMsh2	23110710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	203	0	0	NA	exonic	Acbd5	nonsynonymous SNV	"Acbd5:NM_001355642:exon11:c.A1134G:p.I378M,Acbd5:NM_001102436:exon12:c.A1353G:p.I451M,Acbd5:NM_001102437:exon12:c.A1464G:p.I488M,Acbd5:NM_001102438:exon12:c.A1461G:p.I487M,Acbd5:NM_001355641:exon12:c.A1167G:p.I389M,Acbd5:NM_028793:exon12:c.A1356G:p.I452M,Acbd5:NM_001355637:exon13:c.A1497G:p.I499M,Acbd5:NM_001355638:exon13:c.A1494G:p.I498M,Acbd5:NM_001355639:exon13:c.A1386G:p.I462M"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.714907814	2	0.9884928	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	23181050	12A2p6	cell line	sgMsh2	23181050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	249	0	0	NA	exonic	Yme1l1	nonsynonymous SNV	Yme1l1:NM_013771:exon8:c.T797G:p.L266R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	23537589	12A2p6	cell line	sgMsh2	23537589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	134	0	0	NA	exonic	Spopl	nonsynonymous SNV	"Spopl:NM_001165998:exon6:c.A305G:p.N102S,Spopl:NM_029773:exon6:c.A530G:p.N177S,Spopl:NM_001165997:exon7:c.A305G:p.N102S"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.999928	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	24154610	12A2p6	cell line	sgMsh2	24154610	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	299	0	0	NA	exonic	Il1f8	nonsynonymous SNV	Il1f8:NM_027163:exon2:c.A21C:p.Q7H	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	8.08E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	24395019	12A2p6	cell line	sgMsh2	24395019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	78	0	0	NA	exonic	Psd4	synonymous SNV	"Psd4:NM_001355232:exon2:c.A894G:p.V298V,Psd4:NM_177611:exon2:c.A894G:p.V298V,Psd4:NM_001355231:exon3:c.A894G:p.V298V"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9983529	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	25021954	12A2p6	cell line	sgMsh2	25021954	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	289	0	0	NA	exonic	Pnpla7	synonymous SNV	Pnpla7:NM_146251:exon20:c.C2131T:p.L711L	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.841068017	1	0.9827036	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	64	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9964035	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	25224180	12A2p6	cell line	sgMsh2	25224180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	125	0	0	NA	exonic	Tubb4b	nonsynonymous SNV	Tubb4b:NM_146116:exon2:c.A110G:p.H37R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998809	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	25231500	12A2p6	cell line	sgMsh2	25231500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	155	0	0	NA	exonic	Slc34a3	nonsynonymous SNV	"Slc34a3:NM_080854:exon8:c.G764A:p.S255N,Slc34a3:NM_001362748:exon9:c.G584A:p.S195N"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999778	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	25249426	12A2p6	cell line	sgMsh2	25249426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	103	0	0	NA	exonic	Ndor1	nonsynonymous SNV	"Ndor1:NM_001252541:exon5:c.A622G:p.T208A,Ndor1:NM_001082476:exon7:c.A823G:p.T275A,Ndor1:NM_001252542:exon7:c.A616G:p.T206A"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9995926	GTG	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr2	25566110	12A2p6	cell line	sgMsh2	25566110	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	86	0	0	NA	exonic	Mamdc4	synonymous SNV	Mamdc4:NM_001081199:exon19:c.A2283G:p.L761L	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9989464	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	25617565	12A2p6	cell line	sgMsh2	25617565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	77	0	0	NA	exonic	Ccdc183	nonsynonymous SNV	Ccdc183:NM_029859:exon1:c.A40G:p.T14A	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9982584	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	25898394	12A2p6	cell line	sgMsh2	25898394	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	68	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	"Kcnt1:NM_001302351:exon11:c.A1060G:p.M354V,Kcnt1:NM_001145403:exon12:c.A1042G:p.M348V,Kcnt1:NM_175462:exon12:c.A1102G:p.M368V"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9971223	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	26364684	12A2p6	cell line	sgMsh2	26364684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	156	0	0	NA	exonic	Snapc4	nonsynonymous SNV	"Snapc4:NM_172339:exon21:c.C3803T:p.A1268V,Snapc4:NM_001290419:exon22:c.C3533T:p.A1178V"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.864431017	1	0.9858804	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	26376996	12A2p6	cell line	sgMsh2	26376996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	34	0	0	NA	exonic	Snapc4	nonsynonymous SNV	Snapc4:NM_172339:exon4:c.A218C:p.D73A	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.971900819	1	0.9747112	GTC	nonsynonymous	TCC	8	TCCTCCTC	NA
M7_p20	chr2	26397894	12A2p6	cell line	sgMsh2	26397894	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	93	0	0	NA	exonic	Inpp5e	nonsynonymous SNV	Inpp5e:NM_033134:exon10:c.A1889G:p.Q630R	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.331754607	3	0.9911975	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	26635919	12A2p6	cell line	sgMsh2	26635919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	96	0	0	NA	exonic	Dipk1b	synonymous SNV	Dipk1b:NM_019833:exon5:c.T864C:p.G288G	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993975	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	27071924	12A2p6	cell line	sgMsh2	27071924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	104	0	0	NA	exonic	Mymk	nonsynonymous SNV	Mymk:NM_025376:exon1:c.A92G:p.Y31C	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.901811818	1	0.9910883	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	27928042	12A2p6	cell line	sgMsh2	27928042	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	46	0	0	NA	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon3:c.A278T:p.E93V	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9902196	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	27929453	12A2p6	cell line	sgMsh2	27929453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	142	0	0	NA	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon4:c.A566C:p.K189T	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.999954	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	27986752	12A2p6	cell line	sgMsh2	27986752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	141	0	0	NA	exonic	Col5a1	nonsynonymous SNV	Col5a1:NM_015734:exon29:c.A2462G:p.D821G	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999513	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	28450656	12A2p6	cell line	sgMsh2	28450656	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	77	0	0	NA	exonic	Ppp1r26	synonymous SNV	"Ppp1r26:NM_001005420:exon4:c.T297C:p.R99R,Ppp1r26:NM_001368159:exon4:c.T297C:p.R99R"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9941121	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	28450778	12A2p6	cell line	sgMsh2	28450778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.A419G:p.Y140C,Ppp1r26:NM_001368159:exon4:c.A419G:p.Y140C"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9976978	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	28686765	12A2p6	cell line	sgMsh2	28686765	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	52	0	0	NA	exonic	Tsc1	synonymous SNV	"Tsc1:NM_001289575:exon23:c.C3078T:p.S1026S,Tsc1:NM_001289576:exon23:c.C3060T:p.S1020S,Tsc1:NM_022887:exon23:c.C3075T:p.S1025S"	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.992988	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr2	28809675	12A2p6	cell line	sgMsh2	28809675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	94	0	0	NA	exonic	Ak8	synonymous SNV	Ak8:NM_001033874:exon12:c.T1137C:p.S379S	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993262	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	29065312	12A2p6	cell line	sgMsh2	29065312	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	177	0	0	NA	exonic	Ttf1	nonsynonymous SNV	Ttf1:NM_009442:exon2:c.A687C:p.K229N	2qA3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.971900819	1	0.9999699	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	29763417	12A2p6	cell line	sgMsh2	29763417	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	362	0	0	NA	exonic	Gm13547	nonsynonymous SNV	Gm13547:NM_001177392:exon2:c.C266A:p.P89H	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	2.01E-09	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	29996132	12A2p6	cell line	sgMsh2	29996132	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	35	0	0	NA	exonic	Sptan1	nonsynonymous SNV	"Sptan1:NM_001177667:exon17:c.C2305T:p.L769F,Sptan1:NM_001177668:exon17:c.C2305T:p.L769F,Sptan1:NM_001309460:exon17:c.C2305T:p.L769F,Sptan1:NM_001369325:exon17:c.C2305T:p.L769F"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9820559	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	30111304	12A2p6	cell line	sgMsh2	30111304	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.331	12	0	0	NA	exonic	Zer1	nonsynonymous SNV	"Zer1:NM_001290503:exon3:c.A187G:p.T63A,Zer1:NM_178694:exon3:c.A187G:p.T63A"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9377897	GTG	nonsynonymous	GCAG	8	GCAGGCAG	NA
M7_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	40	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	3	1	1	0.9863733	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	31392146	12A2p6	cell line	sgMsh2	31392146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	135	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon37:c.A5679G:p.E1893E	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999319	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	31675878	12A2p6	cell line	sgMsh2	31675878	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	167	0	0	NA	exonic	Exosc2	nonsynonymous SNV	Exosc2:NM_144886:exon5:c.T400G:p.F134V	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999886	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	31976596	12A2p6	cell line	sgMsh2	31976596	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	127	0	0	NA	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon2:c.T142A:p.Y48N	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998935	GTA	nonsynonymous	GTATG	10	GTATGGTATG	NA
M7_p20	chr2	31977810	12A2p6	cell line	sgMsh2	31977810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	416	0	0	NA	exonic	Nup214	synonymous SNV	Nup214:NM_172268:exon3:c.T288C:p.H96H	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.971900819	1	1.38E-09	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr2	32033233	12A2p6	cell line	sgMsh2	32033233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	41	0	0	NA	exonic	Nup214	nonsynonymous SNV	Nup214:NM_172268:exon29:c.A3773G:p.Q1258R	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9871049	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	32673367	12A2p6	cell line	sgMsh2	32673367	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	108	0	0	NA	exonic	Eng	nonsynonymous SNV	"Eng:NM_001146348:exon7:c.A931G:p.T311A,Eng:NM_001146350:exon7:c.A934G:p.T312A,Eng:NM_007932:exon7:c.A934G:p.T312A"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996919	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	32709892	12A2p6	cell line	sgMsh2	32709892	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	62	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.T485A:p.V162D	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.780324215	1	0.787739	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	32749328	12A2p6	cell line	sgMsh2	32749328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.636	33	0	0	NA	exonic	Sh2d3c	synonymous SNV	"Sh2d3c:NM_001252547:exon6:c.A969G:p.P323P,Sh2d3c:NM_013781:exon7:c.A1425G:p.P475P"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	3	1	1	0.9799748	CAT	synonymous	CCATCA	13	CCATCACCATCAC	NA
M7_p20	chr2	33104854	12A2p6	cell line	sgMsh2	33104854	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	125	0	0	NA	exonic	Garnl3	nonsynonymous SNV	"Garnl3:NM_001355200:exon2:c.C262A:p.L88I,Garnl3:NM_001355201:exon2:c.C142A:p.L48I"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.873776217	1	0.9847666	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	35006105	12A2p6	cell line	sgMsh2	35006105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	118	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon28:c.T3665C:p.V1222A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998239	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	35088812	12A2p6	cell line	sgMsh2	35088812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	132	0	0	NA	exonic	AI182371	nonsynonymous SNV	"AI182371:NM_001243102:exon5:c.T539C:p.V180A,AI182371:NM_001243103:exon5:c.T536C:p.V179A,AI182371:NM_001379434:exon5:c.T539C:p.V180A,AI182371:NM_178885:exon5:c.T536C:p.V179A"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999195	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	35385643	12A2p6	cell line	sgMsh2	35385643	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	141	0	0	NA	exonic	4930402F06Rik	nonsynonymous SNV	"4930402F06Rik:NM_001272040:exon3:c.A44T:p.Q15L,4930402F06Rik:NM_001080709:exon4:c.A137T:p.Q46L"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999513	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	35422190	12A2p6	cell line	sgMsh2	35422190	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	164	0	0	NA	exonic	Ggta1	nonsynonymous SNV	"Ggta1:NM_001145821:exon4:c.T175C:p.Y59H,Ggta1:NM_001308299:exon4:c.T175C:p.Y59H,Ggta1:NM_001308300:exon4:c.T175C:p.Y59H,Ggta1:NM_010283:exon4:c.T175C:p.Y59H"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999866	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36117859	12A2p6	cell line	sgMsh2	36117859	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	132	0	0	NA	exonic	Rbm18	nonsynonymous SNV	"Rbm18:NM_001355580:exon5:c.A322G:p.R108G,Rbm18:NM_001159635:exon6:c.A439G:p.R147G,Rbm18:NM_026434:exon6:c.A529G:p.R177G"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999195	CTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr2	36422142	12A2p6	cell line	sgMsh2	36422142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	654	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.T743C:p.V248A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	1	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36422162	12A2p6	cell line	sgMsh2	36422162	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	607	0	0	NA	exonic	Olfr339	nonsynonymous SNV	Olfr339:NM_146949:exon1:c.A763T:p.I255F	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36640867	12A2p6	cell line	sgMsh2	36640867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	702	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T827C:p.V276A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	1	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36640915	12A2p6	cell line	sgMsh2	36640915	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	619	0	0	NA	exonic	Olfr345	nonsynonymous SNV	Olfr345:NM_146945:exon1:c.T875C:p.L292P	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	1	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36812348	12A2p6	cell line	sgMsh2	36812348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	251	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.T743C:p.V248A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.49996821	2	0.9999915	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36813090	12A2p6	cell line	sgMsh2	36813090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	98	0	0	NA	exonic	Olfr3	nonsynonymous SNV	Olfr3:NM_206903:exon1:c.A1G:p.M1V	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9994612	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36890485	12A2p6	cell line	sgMsh2	36890485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	499	0	0	NA	exonic	Olfr353	nonsynonymous SNV	Olfr353:NM_146941:exon1:c.A362G:p.Y121C	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	36907557	12A2p6	cell line	sgMsh2	36907557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	319	0	0	NA	exonic	Olfr354	nonsynonymous SNV	Olfr354:NM_146939:exon1:c.A610G:p.T204A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.901811818	1	0.9999637	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	37005072	12A2p6	cell line	sgMsh2	37005072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	420	0	0	NA	exonic	Olfr358	nonsynonymous SNV	Olfr358:NM_207235:exon1:c.A541G:p.T181A	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.976573419	1	1.17E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	37069184	12A2p6	cell line	sgMsh2	37069184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	137	0	0	NA	exonic	Olfr360	nonsynonymous SNV	Olfr360:NM_146622:exon1:c.A878G:p.N293S	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999391	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	37085712	12A2p6	cell line	sgMsh2	37085712	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	230	0	0	NA	exonic	Olfr361	nonsynonymous SNV	Olfr361:NM_146368:exon1:c.T35C:p.F12S	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999987	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	37790466	12A2p6	cell line	sgMsh2	37790466	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	66	0	0	NA	exonic	Crb2	nonsynonymous SNV	Crb2:NM_001163566:exon7:c.T1405C:p.F469L	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9967828	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	37800703	12A2p6	cell line	sgMsh2	37800703	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	93	0	0	NA	exonic	Dennd1a	nonsynonymous SNV	"Dennd1a:NM_001362978:exon20:c.A2168T:p.N723I,Dennd1a:NM_001362977:exon21:c.A2288T:p.N763I,Dennd1a:NM_146122:exon22:c.A2384T:p.N795I,Dennd1a:NM_001362973:exon23:c.A2513T:p.N838I"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9992875	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	39047613	12A2p6	cell line	sgMsh2	39047613	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	99	0	0	NA	exonic	Golga1	nonsynonymous SNV	"Golga1:NM_001290649:exon8:c.A640G:p.T214A,Golga1:NM_029793:exon9:c.A715G:p.T239A"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9994905	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	40601553	12A2p6	cell line	sgMsh2	40601553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	288	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon88:c.T13367C:p.L4456S	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.724253014	2	0.9982458	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	40677558	12A2p6	cell line	sgMsh2	40677558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	207	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon79:c.A12156C:p.I4052I	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999988	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	40802974	12A2p6	cell line	sgMsh2	40802974	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	346	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon65:c.C10211T:p.T3404I	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	1.51E-09	GGT	nonsynonymous	TTCTTG	12	TTCTTGTTCTTG	NA
M7_p20	chr2	43629042	12A2p6	cell line	sgMsh2	43629042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	135	0	0	NA	exonic	Kynu	synonymous SNV	"Kynu:NM_001289593:exon9:c.T822C:p.C274C,Kynu:NM_001289594:exon9:c.T822C:p.C274C,Kynu:NM_027552:exon9:c.T822C:p.C274C"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999319	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	44752203	12A2p6	cell line	sgMsh2	44752203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	137	0	0	NA	exonic	Gtdc1	nonsynonymous SNV	"Gtdc1:NM_001362986:exon5:c.T365C:p.V122A,Gtdc1:NM_001362987:exon5:c.T365C:p.V122A,Gtdc1:NM_172662:exon5:c.T365C:p.V122A"	2qB	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999391	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	48917308	12A2p6	cell line	sgMsh2	48917308	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	0	0	NA	exonic	Orc4	stopgain	"Orc4:NM_001355296:exon9:c.A610T:p.K204X,Orc4:NM_011958:exon9:c.A610T:p.K204X"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9993628	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	52077106	12A2p6	cell line	sgMsh2	52077106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	353	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon5:c.A406G:p.M136V,Rif1:NM_001355415:exon5:c.A406G:p.M136V,Rif1:NM_175238:exon5:c.A406G:p.M136V"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	1.35E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	52105483	12A2p6	cell line	sgMsh2	52105483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	209	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon24:c.C2713T:p.L905F,Rif1:NM_001355415:exon24:c.C2692T:p.L898F,Rif1:NM_175238:exon24:c.C2713T:p.L905F"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999989	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	52116276	12A2p6	cell line	sgMsh2	52116276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	312	0	0	NA	exonic	Rif1	nonsynonymous SNV	"Rif1:NM_001355414:exon31:c.T6494C:p.I2165T,Rif1:NM_001355415:exon31:c.T6473C:p.I2158T,Rif1:NM_175238:exon31:c.T6494C:p.I2165T"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	4.42E-09	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	52137428	12A2p6	cell line	sgMsh2	52137428	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	67	0	0	NA	exonic	Neb	frameshift deletion	Neb:NM_010889:exon157:c.21289delA:p.I7097Sfs*7	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr2	55437642	12A2p6	cell line	sgMsh2	55437642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	125	0	0	NA	exonic	Kcnj3	nonsynonymous SNV	"Kcnj3:NM_001304810:exon2:c.T442C:p.Y148H,Kcnj3:NM_008426:exon2:c.T442C:p.Y148H,Kcnj3:NM_001355118:exon3:c.T442C:p.Y148H"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.995636	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	58823588	12A2p6	cell line	sgMsh2	58823588	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	281	0	0	NA	exonic	Ccdc148	nonsynonymous SNV	"Ccdc148:NM_001362393:exon14:c.G1634T:p.R545M,Ccdc148:NM_001362394:exon14:c.G1415T:p.R472M,Ccdc148:NM_001001178:exon15:c.G1550T:p.R517M,Ccdc148:NM_001372501:exon15:c.G1766T:p.R589M"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	0.9999999	CCT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M7_p20	chr2	59308409	12A2p6	cell line	sgMsh2	59308409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	153	0	0	NA	exonic	Pkp4	synonymous SNV	"Pkp4:NM_001362992:exon6:c.A558G:p.S186S,Pkp4:NM_001362990:exon7:c.A996G:p.S332S,Pkp4:NM_001362991:exon7:c.A996G:p.S332S,Pkp4:NM_026361:exon7:c.A1002G:p.S334S,Pkp4:NM_175464:exon7:c.A1002G:p.S334S,Pkp4:NM_001362993:exon8:c.A558G:p.S186S,Pkp4:NM_001362994:exon8:c.A558G:p.S186S,Pkp4:NM_001362995:exon8:c.A558G:p.S186S,Pkp4:NM_001362996:exon8:c.A558G:p.S186S"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999751	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	59790783	12A2p6	cell line	sgMsh2	59790783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	308	0	0	NA	exonic	Tanc1	synonymous SNV	"Tanc1:NM_001290659:exon8:c.T945C:p.S315S,Tanc1:NM_198294:exon9:c.T945C:p.S315S"	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9999873	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	60303594	12A2p6	cell line	sgMsh2	60303594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	179	0	0	NA	exonic	Ly75	synonymous SNV	Ly75:NM_013825:exon32:c.A4686G:p.Q1562Q	2qC1.1	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.09546767	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	61764871	12A2p6	cell line	sgMsh2	61764871	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	166	0	0	NA	exonic	Psmd14	nonsynonymous SNV	Psmd14:NM_021526:exon7:c.T334C:p.Y112H	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.998558	GTA	nonsynonymous	GTTG	15	TGGTTGTTGGTTGGT	NA
M7_p20	chr2	62211477	12A2p6	cell line	sgMsh2	62211477	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	125	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242378:exon4:c.T400A:p.W134R,Slc4a10:NM_001242379:exon4:c.T400A:p.W134R,Slc4a10:NM_001242380:exon4:c.T400A:p.W134R,Slc4a10:NM_001242381:exon4:c.T400A:p.W134R,Slc4a10:NM_001242382:exon4:c.T400A:p.W134R,Slc4a10:NM_001242383:exon4:c.T400A:p.W134R,Slc4a10:NM_001362671:exon4:c.T397A:p.W133R,Slc4a10:NM_001362672:exon4:c.T397A:p.W133R,Slc4a10:NM_001362673:exon4:c.T397A:p.W133R,Slc4a10:NM_001362674:exon4:c.T397A:p.W133R,Slc4a10:NM_001362675:exon4:c.T397A:p.W133R,Slc4a10:NM_001362676:exon4:c.T397A:p.W133R,Slc4a10:NM_033552:exon4:c.T400A:p.W134R"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.98591862	1	0.9997951	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	62478687	12A2p6	cell line	sgMsh2	62478687	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	106	0	0	NA	exonic	Gcg	nonsynonymous SNV	Gcg:NM_008100:exon3:c.A122G:p.H41R	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996555	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	62611711	12A2p6	cell line	sgMsh2	62611711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	92	0	0	NA	exonic	Ifih1	synonymous SNV	"Ifih1:NM_001164477:exon5:c.A1161G:p.S387S,Ifih1:NM_027835:exon6:c.A1308G:p.S436S"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9992465	CTG	synonymous	CCAA	10	CCAACCAACC	NA
M7_p20	chr2	62635163	12A2p6	cell line	sgMsh2	62635163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	137	0	0	NA	exonic	Ifih1	nonsynonymous SNV	Ifih1:NM_027835:exon3:c.A662G:p.N221S	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999391	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	63979031	12A2p6	cell line	sgMsh2	63979031	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	188	0	0	NA	exonic	Fign	nonsynonymous SNV	"Fign:NM_021716:exon3:c.A1894G:p.K632E,Fign:NM_001267846:exon4:c.A1861G:p.K621E,Fign:NM_001267847:exon4:c.A1861G:p.K621E"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999965	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	65497488	12A2p6	cell line	sgMsh2	65497488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	523	0	0	NA	exonic	Scn3a	nonsynonymous SNV	"Scn3a:NM_001355166:exon16:c.T2804C:p.I935T,Scn3a:NM_001355167:exon16:c.T2753C:p.I918T,Scn3a:NM_001355168:exon16:c.T2666C:p.I889T,Scn3a:NM_001355169:exon16:c.T2666C:p.I889T,Scn3a:NM_001355170:exon16:c.T2657C:p.I886T,Scn3a:NM_001355171:exon16:c.T899C:p.I300T,Scn3a:NM_018732:exon16:c.T2657C:p.I886T"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	1.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	65717806	12A2p6	cell line	sgMsh2	65717806	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	219	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346679:exon17:c.A3341G:p.D1114G,Scn2a:NM_001346680:exon17:c.A3341G:p.D1114G"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999994	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	65763800	12A2p6	cell line	sgMsh2	65763800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	313	0	0	NA	exonic	Scn2a	synonymous SNV	"Scn2a:NM_001099298:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346679:exon27:c.C4992T:p.I1664I,Scn2a:NM_001346680:exon27:c.C4992T:p.I1664I"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	4.23E-09	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr2	65763849	12A2p6	cell line	sgMsh2	65763849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	340	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346679:exon27:c.T5041C:p.S1681P,Scn2a:NM_001346680:exon27:c.T5041C:p.S1681P"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	1.71E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	66231368	12A2p6	cell line	sgMsh2	66231368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	348	0	0	NA	exonic	Ttc21b	synonymous SNV	"Ttc21b:NM_001047604:exon12:c.A1437G:p.S479S,Ttc21b:NM_001290669:exon12:c.A1437G:p.S479S"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	66536237	12A2p6	cell line	sgMsh2	66536237	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.286	159	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon14:c.2201delA:p.K734Sfs*6,Scn9a:NM_001290675:exon14:c.2168delA:p.K723Sfs*6"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	66565105	12A2p6	cell line	sgMsh2	66565105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	48	0	0	NA	exonic	Scn9a	synonymous SNV	"Scn9a:NM_001290674:exon5:c.T594C:p.F198F,Scn9a:NM_001290675:exon5:c.T594C:p.F198F"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9884761	CAA	synonymous	A	5	AAAAA	NA
M7_p20	chr2	66676137	12A2p6	cell line	sgMsh2	66676137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	99	0	0	NA	exonic	Scn7a	synonymous SNV	Scn7a:NM_009135:exon25:c.T4407C:p.P1469P	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9994905	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	66689691	12A2p6	cell line	sgMsh2	66689691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	86	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon18:c.A2868G:p.I956M	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9989464	ATA	nonsynonymous	AT	8	ATATATAT	NA
M7_p20	chr2	67514993	12A2p6	cell line	sgMsh2	67514993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	60	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A7577G:p.K2526R,Xirp2:NM_001083919:exon7:c.A7577G:p.K2526R"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9955059	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	67516356	12A2p6	cell line	sgMsh2	67516356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	96	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A8940G:p.I2980M,Xirp2:NM_001083919:exon7:c.A8940G:p.I2980M"	2qC1.3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993975	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	69202618	12A2p6	cell line	sgMsh2	69202618	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	159	0	0	NA	exonic	Spc25	synonymous SNV	"Spc25:NM_025565:exon3:c.T162A:p.T54T,Spc25:NM_001199123:exon4:c.T306A:p.T102T,Spc25:NM_001199124:exon4:c.T306A:p.T102T,Spc25:NM_001305800:exon4:c.T306A:p.T102T"	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999822	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	69483852	12A2p6	cell line	sgMsh2	69483852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	68	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6534C:p.N2178N	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.983414	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	70476910	12A2p6	cell line	sgMsh2	70476910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	44	0	0	NA	exonic	Sp5	nonsynonymous SNV	Sp5:NM_022435:exon2:c.T938C:p.L313P	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9890748	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	71366560	12A2p6	cell line	sgMsh2	71366560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	150	0	0	NA	exonic	Slc25a12	synonymous SNV	Slc25a12:NM_172436:exon2:c.T33C:p.G11G	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999706	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	71421695	12A2p6	cell line	sgMsh2	71421695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	70	0	0	NA	exonic	Hat1	nonsynonymous SNV	Hat1:NM_026115:exon8:c.T770C:p.V257A	2qC2	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.997426	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	73356701	12A2p6	cell line	sgMsh2	73356701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	153	0	0	NA	exonic	Gpr155	synonymous SNV	"Gpr155:NM_001276444:exon11:c.T1683C:p.S561S,Gpr155:NM_001190297:exon12:c.T1767C:p.S589S,Gpr155:NM_001276443:exon12:c.T1767C:p.S589S"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999751	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	73568222	12A2p6	cell line	sgMsh2	73568222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	233	0	0	NA	exonic	Chrna1	nonsynonymous SNV	Chrna1:NM_007389:exon7:c.T872C:p.V291A	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999997	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	74657986	12A2p6	cell line	sgMsh2	74657986	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.375	8	0	0	NA	exonic	Evx2	synonymous SNV	Evx2:NM_007967:exon2:c.T489C:p.G163G	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9226809	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	74876455	12A2p6	cell line	sgMsh2	74876455	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	96	0	0	NA	exonic	Mtx2	nonsynonymous SNV	Mtx2:NM_016804:exon10:c.G773A:p.G258D	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993975	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	75891847	12A2p6	cell line	sgMsh2	75891847	A	-	Deletion	Mutect2;Vardict	2	0.208	53	0	0	NA	exonic	Agps	frameshift deletion	Agps:NM_172666:exon13:c.1380delA:p.K462Sfs*14	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.971900819	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr2	76076079	12A2p6	cell line	sgMsh2	76076079	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	207	0	0	NA	exonic	Pde11a	nonsynonymous SNV	Pde11a:NM_001081033:exon11:c.C1793G:p.A598G	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.532676411	2	0.9999992	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76375434	12A2p6	cell line	sgMsh2	76375434	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	99	0	0	NA	exonic	Rbm45	nonsynonymous SNV	Rbm45:NM_153405:exon4:c.A629G:p.Q210R	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.677527013	2	0.09401946	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76379058	12A2p6	cell line	sgMsh2	76379058	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	109	0	0	NA	exonic	Rbm45	synonymous SNV	Rbm45:NM_153405:exon8:c.A1215G:p.L405L	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997087	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	76591882	12A2p6	cell line	sgMsh2	76591882	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	106	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon22:c.A2382C:p.G794G,Osbpl6:NM_001290733:exon24:c.A2475C:p.G825G,Osbpl6:NM_145525:exon24:c.A2499C:p.G833G"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.920502218	1	0.9953849	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	76711137	12A2p6	cell line	sgMsh2	76711137	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	169	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A76523G:p.Y25508C,Ttn:NM_011652:exon307:c.A96266G:p.Y32089C,Ttn:NM_001385708:exon344:c.A102098G:p.Y34033C"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999898	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76713049	12A2p6	cell line	sgMsh2	76713049	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	168	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.A74611G:p.T24871A,Ttn:NM_011652:exon307:c.A94354G:p.T31452A,Ttn:NM_001385708:exon344:c.A100186G:p.T33396A"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999892	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76732118	12A2p6	cell line	sgMsh2	76732118	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	153	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon160:c.61401delA:p.K20467Nfs*38,Ttn:NM_011652:exon281:c.81144delA:p.K27048Nfs*38,Ttn:NM_001385708:exon318:c.86976delA:p.K28992Nfs*38"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.99059122	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	76739135	12A2p6	cell line	sgMsh2	76739135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	223	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A56432G:p.K18811R,Ttn:NM_011652:exon275:c.A76175G:p.K25392R,Ttn:NM_001385708:exon312:c.A82007G:p.K27336R"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76744270	12A2p6	cell line	sgMsh2	76744270	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	257	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon154:c.A51297G:p.V17099V,Ttn:NM_011652:exon275:c.A71040G:p.V23680V,Ttn:NM_001385708:exon312:c.A76872G:p.V25624V"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	0.939192619	1	0.9999908	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	76768907	12A2p6	cell line	sgMsh2	76768907	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	377	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon131:c.A32776C:p.N10926H,Ttn:NM_011652:exon252:c.A52519C:p.N17507H,Ttn:NM_001385708:exon289:c.A58351C:p.N19451H"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	1.09E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr2	76776268	12A2p6	cell line	sgMsh2	76776268	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	298	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon118:c.A29316G:p.A9772A,Ttn:NM_011652:exon239:c.A49059G:p.A16353A,Ttn:NM_001385708:exon276:c.A54891G:p.A18297A"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	8.48E-09	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	76778035	12A2p6	cell line	sgMsh2	76778035	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	74	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_028004:exon116:c.28562delA:p.K9521Rfs*23,Ttn:NM_011652:exon237:c.48305delA:p.K16102Rfs*23,Ttn:NM_001385708:exon274:c.54137delA:p.K18046Rfs*23"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	TTCT	10	TTCTTTCTTT	-1
M7_p20	chr2	76789931	12A2p6	cell line	sgMsh2	76789931	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	122	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon93:c.A22578C:p.G7526G,Ttn:NM_011652:exon214:c.A42321C:p.G14107G,Ttn:NM_001385708:exon251:c.A48153C:p.G16051G"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998592	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr2	76808646	12A2p6	cell line	sgMsh2	76808646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	94	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon66:c.A16710G:p.K5570K,Ttn:NM_011652:exon187:c.A36453G:p.K12151K,Ttn:NM_001385708:exon224:c.A42285G:p.K14095K"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993262	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	76810340	12A2p6	cell line	sgMsh2	76810340	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	208	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.A16082G:p.K5361R,Ttn:NM_011652:exon184:c.A35825G:p.K11942R,Ttn:NM_001385708:exon221:c.A41657G:p.K13886R"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999989	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76810518	12A2p6	cell line	sgMsh2	76810518	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	158	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon63:c.C15904A:p.L5302I,Ttn:NM_011652:exon184:c.C35647A:p.L11883I,Ttn:NM_001385708:exon221:c.C41479A:p.L13827I"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999812	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76810937	12A2p6	cell line	sgMsh2	76810937	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	95	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon61:c.A15743C:p.K5248T,Ttn:NM_011652:exon182:c.A35486C:p.K11829T,Ttn:NM_001385708:exon219:c.A41318C:p.K13773T"	2qC3	chr2-3197272-76814467	5	3	2	0.9	4.205340083	NA	2	1	1	0.9993628	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	76822458	12A2p6	cell line	sgMsh2	76822458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	159	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon166:c.A32832G:p.Q10944Q,Ttn:NM_001385708:exon203:c.A38664G:p.Q12888Q"	2qC3	chr2-76814468-76867310	3	NA	NA	0.9	4.205340083	NA	NA	0.855085817	1	0.9787513	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	76856849	12A2p6	cell line	sgMsh2	76856849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	111	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon123:c.A28392G:p.K9464K,Ttn:NM_001385708:exon125:c.A31449G:p.K10483K"	2qC3	chr2-76814468-76867310	3	NA	NA	0.9	4.205340083	NA	NA	0.859758417	1	0.9692642	GTT	synonymous	T	5	TTTTT	NA
M7_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	213	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-82253895	5	3	2	0.9	4.205340083	NA	1	0.710235214	2	0.9938204	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82258044	12A2p6	cell line	sgMsh2	82258044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	223	0	0	NA	exonic	Zfp804a	nonsynonymous SNV	Zfp804a:NM_175513:exon4:c.A2216G:p.K739R	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	2	0.999998	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82979003	12A2p6	cell line	sgMsh2	82979003	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	754	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.T5659C:p.L1887L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.962555619	1	1	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	82983323	12A2p6	cell line	sgMsh2	82983323	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	282	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.G9979T:p.A3327S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.616783212	2	0.9999998	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82990519	12A2p6	cell line	sgMsh2	82990519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	593	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A16589G:p.Q5530R	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.756961215	2	0.9999035	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82992550	12A2p6	cell line	sgMsh2	82992550	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	320	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T18620G:p.L6207R	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	2	2.71E-09	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82993509	12A2p6	cell line	sgMsh2	82993509	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	345	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.A19579G:p.T6527A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.841068017	1	0.9881831	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	82998226	12A2p6	cell line	sgMsh2	82998226	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	178	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon18:c.A20360T:p.H6787L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.742943415	2	0.8922269	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	83001604	12A2p6	cell line	sgMsh2	83001604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	152	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon20:c.A20713G:p.K6905E	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.672854413	2	0.9917745	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	83803240	12A2p6	cell line	sgMsh2	83803240	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	266	0	0	NA	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3040T:p.M1014L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	2	0.9997722	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	83803275	12A2p6	cell line	sgMsh2	83803275	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	296	0	0	NA	exonic	Itgav	nonsynonymous SNV	Itgav:NM_008402:exon30:c.A3075C:p.E1025D	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.841068017	1	0.983506	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	84453862	12A2p6	cell line	sgMsh2	84453862	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	347	0	0	NA	exonic	Tfpi	frameshift deletion	"Tfpi:NM_001177319:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001177320:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001355271:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_001355273:exon4:c.245delG:p.G82Dfs*27,Tfpi:NM_011576:exon4:c.245delG:p.G82Dfs*27"	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7_p20	chr2	84612086	12A2p6	cell line	sgMsh2	84612086	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	164	0	0	NA	exonic	Ctnnd1	frameshift deletion	"Ctnnd1:NM_001085449:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001355067:exon9:c.1580delA:p.K527Sfs*47,Ctnnd1:NM_001085453:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001355066:exon10:c.1883delA:p.K628Sfs*47,Ctnnd1:NM_001085448:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001085450:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355064:exon11:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_001355065:exon12:c.1901delA:p.K634Sfs*47,Ctnnd1:NM_007615:exon12:c.1901delA:p.K634Sfs*47"	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	84736906	12A2p6	cell line	sgMsh2	84736906	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	176	0	0	NA	exonic	Ypel4	nonsynonymous SNV	Ypel4:NM_001005342:exon2:c.A82G:p.T28A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.261665605	3	1.48E-08	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	84849786	12A2p6	cell line	sgMsh2	84849786	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	95	0	0	NA	exonic	Slc43a1	nonsynonymous SNV	"Slc43a1:NM_001083809:exon2:c.T353C:p.L118P,Slc43a1:NM_001081349:exon3:c.T404C:p.L135P,Slc43a1:NM_024497:exon3:c.T275C:p.L92P"	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.803687216	1	0.832775	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	84950115	12A2p6	cell line	sgMsh2	84950115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	531	0	0	NA	exonic	Slc43a3	nonsynonymous SNV	Slc43a3:NM_021398:exon9:c.A912G:p.I304M	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	2	0.9985498	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85054346	12A2p6	cell line	sgMsh2	85054346	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	362	0	0	NA	exonic	Tnks1bp1	synonymous SNV	Tnks1bp1:NM_001081260:exon4:c.T789C:p.P263P	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	2	1.80E-08	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	85647893	12A2p6	cell line	sgMsh2	85647893	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	637	0	0	NA	exonic	Olfr1002	stopgain	Olfr1002:NM_146573:exon1:c.C427T:p.Q143X	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.799014616	2	0.8606631	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85754028	12A2p6	cell line	sgMsh2	85754028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	311	0	0	NA	exonic	Olfr1010	nonsynonymous SNV	Olfr1010:NM_207149:exon3:c.T658C:p.F220L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.808359816	1	0.7415586	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85799569	12A2p6	cell line	sgMsh2	85799569	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	376	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A700G:p.M234V	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.813032416	1	0.8004128	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85799973	12A2p6	cell line	sgMsh2	85799973	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	364	0	0	NA	exonic	Olfr1016	nonsynonymous SNV	Olfr1016:NM_001011758:exon1:c.A296T:p.Q99L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	2	0.9999951	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85800215	12A2p6	cell line	sgMsh2	85800215	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	485	0	0	NA	exonic	Olfr1016	synonymous SNV	Olfr1016:NM_001011758:exon1:c.T54C:p.S18S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.733598215	2	0.9999771	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	85868829	12A2p6	cell line	sgMsh2	85868829	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.142	996	0	0	NA	exonic	Olfr1022	frameshift insertion	Olfr1022:NM_146589:exon1:c.237dupA:p.N80Kfs*31	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	NA	NA	CCA	frameshift	NA	NA	NA	1
M7_p20	chr2	85869037	12A2p6	cell line	sgMsh2	85869037	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	771	0	0	NA	exonic	Olfr1022	synonymous SNV	Olfr1022:NM_146589:exon1:c.A444G:p.S148S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.878448817	1	0.9999999	CAT	synonymous	TCTCAT	12	TCTCATTCTCAT	NA
M7_p20	chr2	85887399	12A2p6	cell line	sgMsh2	85887399	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	314	0	0	NA	exonic	Olfr1023	frameshift deletion	Olfr1023:NM_146587:exon1:c.598delT:p.F200Lfs*2	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7_p20	chr2	85923475	12A2p6	cell line	sgMsh2	85923475	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	769	0	0	NA	exonic	Olfr1026	nonsynonymous SNV	Olfr1026:NM_146584:exon1:c.T206C:p.V69A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.831722816	1	0.9941549	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85992650	12A2p6	cell line	sgMsh2	85992650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	182	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A832G:p.T278A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.51865861	2	0.9999834	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	85992807	12A2p6	cell line	sgMsh2	85992807	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	190	0	0	NA	exonic	Olfr1031	nonsynonymous SNV	Olfr1031:NM_001011759:exon1:c.A989G:p.Y330C	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	2	0.7359223	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86041816	12A2p6	cell line	sgMsh2	86041816	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.189	760	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.G500A:p.C167Y	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.883121418	1	3.67E-08	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86046756	12A2p6	cell line	sgMsh2	86046756	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	713	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.T273G:p.S91S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.672854413	2	1.00E-09	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	86084983	12A2p6	cell line	sgMsh2	86084983	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	558	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.A793G:p.S265G	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.813032416	1	0.744837	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86085501	12A2p6	cell line	sgMsh2	86085501	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	134	0	0	NA	exonic	Olfr1037	nonsynonymous SNV	Olfr1037:NM_001011532:exon1:c.T275C:p.I92T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.532676411	2	0.999882	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86170923	12A2p6	cell line	sgMsh2	86170923	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	342	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.A893C:p.K298T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.700890014	2	0.999969	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86170996	12A2p6	cell line	sgMsh2	86170996	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	374	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G820A:p.A274T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.724253014	2	0.9998565	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86198171	12A2p6	cell line	sgMsh2	86198171	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	301	0	0	NA	exonic	Olfr1045	nonsynonymous SNV	Olfr1045:NM_147017:exon1:c.C580A:p.L194I	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.626128412	2	0.9999999	AGG	nonsynonymous	AGGT	8	AGGTAGGT	NA
M7_p20	chr2	86217371	12A2p6	cell line	sgMsh2	86217371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	580	0	0	NA	exonic	Olfr1046	nonsynonymous SNV	Olfr1046:NM_146582:exon1:c.C338A:p.T113N	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.719580414	2	0.9999998	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86228439	12A2p6	cell line	sgMsh2	86228439	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	490	0	0	NA	exonic	Olfr1047	synonymous SNV	Olfr1047:NM_147012:exon1:c.C531T:p.F177F	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.752288615	2	0.9996615	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr2	86275949	12A2p6	cell line	sgMsh2	86275949	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	534	0	0	NA	exonic	Olfr1051	stopgain	Olfr1051:NM_207562:exon1:c.T537A:p.C179X	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.98591862	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86332428	12A2p6	cell line	sgMsh2	86332428	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	197	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T927A:p.N309K	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	2	0.500572	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86332927	12A2p6	cell line	sgMsh2	86332927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	211	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.T428C:p.V143A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.747616015	2	0.9296021	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86347285	12A2p6	cell line	sgMsh2	86347285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	568	0	0	NA	exonic	Olfr1055	synonymous SNV	"Olfr1055:NM_001310551:exon1:c.T480C:p.I160I,Olfr1055:NM_147021:exon1:c.T480C:p.I160I"	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.658836613	2	1.01E-09	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr2	86413272	12A2p6	cell line	sgMsh2	86413272	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	384	0	0	NA	exonic	Olfr1061	stopgain	Olfr1061:NM_207134:exon1:c.T779A:p.L260X	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	1	0.9228551	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86413389	12A2p6	cell line	sgMsh2	86413389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	215	0	0	NA	exonic	Olfr1061	nonsynonymous SNV	Olfr1061:NM_207134:exon1:c.T662C:p.I221T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	1	0.9844615	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86423263	12A2p6	cell line	sgMsh2	86423263	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	809	0	0	NA	exonic	Olfr1062	stopgain	Olfr1062:NM_147078:exon1:c.C412T:p.R138X	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	1	0.9999528	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86483115	12A2p6	cell line	sgMsh2	86483115	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	178	0	0	NA	exonic	Olfr228	nonsynonymous SNV	Olfr228:NM_146405:exon1:c.C626A:p.T209N	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.803687216	1	0.7722978	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86508585	12A2p6	cell line	sgMsh2	86508585	A	G	SNV	Mutect2;Vardict	2	0.038	767	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.A125G:p.N42S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.177558804	3	1	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86508904	12A2p6	cell line	sgMsh2	86508904	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	292	0	0	NA	exonic	Olfr1076	synonymous SNV	Olfr1076:NM_146406:exon1:c.A444G:p.P148P	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.261665605	3	1.00E-09	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	86509001	12A2p6	cell line	sgMsh2	86509001	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	400	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.G541T:p.G181C	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.588747612	2	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86806546	12A2p6	cell line	sgMsh2	86806546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	810	0	0	NA	exonic	Olfr141	nonsynonymous SNV	Olfr141:NM_181818:exon1:c.T452C:p.I151T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.943865219	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86829277	12A2p6	cell line	sgMsh2	86829277	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	605	0	0	NA	exonic	Olfr1094	nonsynonymous SNV	Olfr1094:NM_146365:exon1:c.C524A:p.T175N	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.817705016	1	0.8654356	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86890262	12A2p6	cell line	sgMsh2	86890262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	232	0	0	NA	exonic	Olfr1097	synonymous SNV	Olfr1097:NM_146843:exon2:c.T912C:p.V304V	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	2	0.9976483	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr2	86923173	12A2p6	cell line	sgMsh2	86923173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	499	0	0	NA	exonic	Olfr1098	nonsynonymous SNV	Olfr1098:NM_146845:exon1:c.T358C:p.Y120H	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	2	1.00E-09	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	86978469	12A2p6	cell line	sgMsh2	86978469	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	443	0	0	NA	exonic	Olfr1100	nonsynonymous SNV	Olfr1100:NM_146594:exon1:c.C326A:p.A109D	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.621455812	2	1.02E-09	AGC	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M7_p20	chr2	87212904	12A2p6	cell line	sgMsh2	87212904	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	289	0	0	NA	exonic	Olfr1113	nonsynonymous SNV	Olfr1113:NM_207565:exon1:c.A11T:p.K4I	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.878448817	1	0.9993718	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87252877	12A2p6	cell line	sgMsh2	87252877	-	G	Insertion	Mutect2;Vardict	2	0.15	111	0	0	NA	exonic	Olfr1115	frameshift insertion	Olfr1115:NM_146297:exon1:c.940dupG:p.A315Gfs*15	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.700890014	NA	NA	CAG	frameshift	NA	NA	NA	1
M7_p20	chr2	87309299	12A2p6	cell line	sgMsh2	87309299	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	1025	0	0	NA	exonic	Olfr1118	nonsynonymous SNV	Olfr1118:NM_207632:exon1:c.G509A:p.C170Y	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.756961215	2	2.69E-08	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87309464	12A2p6	cell line	sgMsh2	87309464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	743	0	0	NA	exonic	Olfr1118	nonsynonymous SNV	Olfr1118:NM_207632:exon1:c.T674C:p.M225T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.920502218	1	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87418428	12A2p6	cell line	sgMsh2	87418428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	274	0	0	NA	exonic	Olfr1123	nonsynonymous SNV	Olfr1123:NM_146350:exon1:c.C379T:p.L127F	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.976573419	1	0.9999998	CCT	nonsynonymous	CCT	9	CCTCCTCCT	NA
M7_p20	chr2	87418564	12A2p6	cell line	sgMsh2	87418564	A	-	Deletion	Mutect2;Vardict	2	0.151	491	0	0	NA	exonic	Olfr1123	frameshift deletion	Olfr1123:NM_146350:exon1:c.515delA:p.T173Hfs*34	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.705562614	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr2	87457588	12A2p6	cell line	sgMsh2	87457588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	593	0	0	NA	exonic	Olfr1126	nonsynonymous SNV	Olfr1126:NM_146837:exon1:c.T422C:p.V141A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	2	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87489731	12A2p6	cell line	sgMsh2	87489731	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	265	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon3:c.A1217T:p.Q406L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.668181813	2	0.9999649	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87491385	12A2p6	cell line	sgMsh2	87491385	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	209	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.T305C:p.V102A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.738270815	2	0.9584805	AAC	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr2	87544785	12A2p6	cell line	sgMsh2	87544785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	325	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.G758A:p.G253E	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.663509213	2	0.9999986	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87575824	12A2p6	cell line	sgMsh2	87575824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	437	0	0	NA	exonic	Olfr1129	nonsynonymous SNV	Olfr1129:NM_001011836:exon1:c.T739C:p.C247R	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.841068017	1	0.9937029	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87628953	12A2p6	cell line	sgMsh2	87628953	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	707	0	0	NA	exonic	Olfr1131	synonymous SNV	Olfr1131:NM_146658:exon1:c.C489T:p.F163F	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.546694211	2	1	TCC	synonymous	NA	NA	NA	NA
M7_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Vardict	2	0.168	360	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	NA	NA	CAT	frameshift	NA	NA	NA	1
M7_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	309	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.686872214	2	0.999973	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	87746294	12A2p6	cell line	sgMsh2	87746294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	480	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A97G:p.I33V	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.789669416	2	0.09521259	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87802800	12A2p6	cell line	sgMsh2	87802800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	377	0	0	NA	exonic	Olfr1143	nonsynonymous SNV	Olfr1143:NM_146293:exon1:c.C410T:p.T137I	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.696217414	2	0.999995	ACA	nonsynonymous	AACA	8	AACAAACA	NA
M7_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	348	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.794342016	2	0.6384084	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87833305	12A2p6	cell line	sgMsh2	87833305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	440	0	0	NA	exonic	Olfr1148	nonsynonymous SNV	Olfr1148:NM_001011519:exon1:c.T265C:p.F89L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.976573419	1	1.06E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87943158	12A2p6	cell line	sgMsh2	87943158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	188	0	0	NA	exonic	Olfr1155	nonsynonymous SNV	Olfr1155:NM_146643:exon1:c.T469C:p.C157R	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	0.9999965	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87949574	12A2p6	cell line	sgMsh2	87949574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	466	0	0	NA	exonic	Olfr1156	nonsynonymous SNV	Olfr1156:NM_146817:exon1:c.T658C:p.F220L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.584075012	2	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87961977	12A2p6	cell line	sgMsh2	87961977	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	343	0	0	NA	exonic	Olfr1157	nonsynonymous SNV	Olfr1157:NM_146849:exon2:c.T914A:p.V305E	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.976573419	1	8.20E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	284	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.49996821	2	0.9999978	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88005850	12A2p6	cell line	sgMsh2	88005850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	203	0	0	NA	exonic	Olfr1160	synonymous SNV	Olfr1160:NM_146649:exon1:c.T927C:p.F309F	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.906484418	1	0.9994701	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr2	88006235	12A2p6	cell line	sgMsh2	88006235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	713	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.T542C:p.V181A	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.981246019	1	1	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88025305	12A2p6	cell line	sgMsh2	88025305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	679	0	0	NA	exonic	Olfr1161	synonymous SNV	Olfr1161:NM_146848:exon1:c.T582C:p.H194H	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	2	1	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr2	88070610	12A2p6	cell line	sgMsh2	88070610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	337	0	0	NA	exonic	Olfr1163	nonsynonymous SNV	Olfr1163:NM_146644:exon1:c.A771G:p.I257M	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.897139218	1	0.9999628	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88185810	12A2p6	cell line	sgMsh2	88185810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	144	0	0	NA	exonic	Olfr1168	nonsynonymous SNV	Olfr1168:NM_146531:exon1:c.C932T:p.T311I	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.686872214	2	0.9783272	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88275040	12A2p6	cell line	sgMsh2	88275040	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	302	0	0	NA	exonic	Olfr1173	nonsynonymous SNV	Olfr1173:NM_207566:exon1:c.A8C:p.N3T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.574729811	2	2.04E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88339906	12A2p6	cell line	sgMsh2	88339906	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	491	0	0	NA	exonic	Olfr1176	nonsynonymous SNV	Olfr1176:NM_146771:exon1:c.T340C:p.F114L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.644818813	2	1.03E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88402653	12A2p6	cell line	sgMsh2	88402653	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	237	0	0	NA	exonic	Olfr1179	frameshift deletion	Olfr1179:NM_146917:exon1:c.280delA:p.S94Afs*21	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.873776217	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr2	88412415	12A2p6	cell line	sgMsh2	88412415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	271	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.T242C:p.L81P	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	1	0.9131935	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88412570	12A2p6	cell line	sgMsh2	88412570	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	217	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C87A:p.C29X	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.588747612	2	0.9999984	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88423567	12A2p6	cell line	sgMsh2	88423567	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	468	0	0	NA	exonic	Olfr1181	nonsynonymous SNV	Olfr1181:NM_001011816:exon1:c.C457A:p.H153N	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	2	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88446751	12A2p6	cell line	sgMsh2	88446751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	602	0	0	NA	exonic	Olfr1182	synonymous SNV	Olfr1182:NM_001011535:exon3:c.T186C:p.S62S	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.49996821	2	1.01E-09	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	88461677	12A2p6	cell line	sgMsh2	88461677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	363	0	0	NA	exonic	Olfr1183	synonymous SNV	Olfr1183:NM_146529:exon1:c.T336C:p.L112L	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	2	1.09E-09	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	88682960	12A2p6	cell line	sgMsh2	88682960	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	316	0	0	NA	exonic	Olfr1195	synonymous SNV	Olfr1195:NM_146753:exon1:c.A771G:p.T257T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	3.74E-09	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	88700603	12A2p6	cell line	sgMsh2	88700603	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	320	0	0	NA	exonic	Olfr1196	nonsynonymous SNV	Olfr1196:NM_146464:exon1:c.T725C:p.I242T	2qD	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.556039411	2	1.04E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88745996	12A2p6	cell line	sgMsh2	88745996	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	478	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.G891T:p.K297N	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.789669416	2	0.09676607	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88746012	12A2p6	cell line	sgMsh2	88746012	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	500	0	0	NA	exonic	Olfr1198	nonsynonymous SNV	Olfr1198:NM_207567:exon1:c.A875C:p.K292T	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.808359816	1	0.6110817	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88756087	12A2p6	cell line	sgMsh2	88756087	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	348	0	0	NA	exonic	Olfr1199	nonsynonymous SNV	"Olfr1199:NM_001368212:exon2:c.T587G:p.L196R,Olfr1199:NM_146458:exon2:c.T587G:p.L196R"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.738270815	2	0.9986238	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88767954	12A2p6	cell line	sgMsh2	88767954	G	T	SNV	Mutect2;MuSe;Vardict	3	0.139	572	0	0	NA	exonic	Olfr1200	synonymous SNV	Olfr1200:NM_001005227:exon1:c.C360A:p.R120R	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.649491413	2	1.00E-09	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr2	88831221	12A2p6	cell line	sgMsh2	88831221	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	393	0	0	NA	exonic	Olfr1205	nonsynonymous SNV	Olfr1205:NM_146896:exon2:c.G103A:p.G35R	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.719580414	2	0.9999532	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88896799	12A2p6	cell line	sgMsh2	88896799	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	579	0	0	NA	exonic	Olfr1208	nonsynonymous SNV	Olfr1208:NM_146778:exon1:c.A797G:p.K266R	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	2	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88929666	12A2p6	cell line	sgMsh2	88929666	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	629	0	0	NA	exonic	Olfr1211	synonymous SNV	Olfr1211:NM_001011804:exon1:c.C648T:p.S216S	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.836395417	1	0.9958482	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr2	88929956	12A2p6	cell line	sgMsh2	88929956	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	541	0	0	NA	exonic	Olfr1211	nonsynonymous SNV	Olfr1211:NM_001011804:exon1:c.G358A:p.D120N	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.616783212	2	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	88959354	12A2p6	cell line	sgMsh2	88959354	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	192	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.C887T:p.A296V	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.841068017	1	0.9667629	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89055070	12A2p6	cell line	sgMsh2	89055070	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	393	0	0	NA	exonic	Olfr1218	nonsynonymous SNV	Olfr1218:NM_146818:exon1:c.T355A:p.Y119N	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.99526382	1	1.07E-09	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89097028	12A2p6	cell line	sgMsh2	89097028	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	341	0	0	NA	exonic	Olfr1220	frameshift deletion	Olfr1220:NM_146900:exon1:c.898delA:p.M300Cfs*17	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.850413217	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	89112330	12A2p6	cell line	sgMsh2	89112330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	791	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T181C:p.F61L	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.784996816	2	0.9979245	AAG	nonsynonymous	AAG	9	AAGAAGAAG	NA
M7_p20	chr2	89112332	12A2p6	cell line	sgMsh2	89112332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	790	0	0	NA	exonic	Olfr1221	nonsynonymous SNV	Olfr1221:NM_146902:exon1:c.T179C:p.F60S	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.593420212	2	1	GAA	nonsynonymous	AAG	9	AAGAAGAAG	NA
M7_p20	chr2	89193725	12A2p6	cell line	sgMsh2	89193725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	703	0	0	NA	exonic	Olfr1226	nonsynonymous SNV	Olfr1226:NM_146967:exon1:c.T308C:p.V103A	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.658836613	2	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89248982	12A2p6	cell line	sgMsh2	89248982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	669	0	0	NA	exonic	Olfr1228	synonymous SNV	Olfr1228:NM_146971:exon1:c.A711G:p.R237R	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.864431017	1	0.9999897	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr2	89249319	12A2p6	cell line	sgMsh2	89249319	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	564	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.T374G:p.I125S	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.957883019	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89303361	12A2p6	cell line	sgMsh2	89303361	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	225	0	0	NA	exonic	Olfr1231	nonsynonymous SNV	Olfr1231:NM_146454:exon1:c.T230C:p.V77A	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.836395417	1	0.9635184	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89340236	12A2p6	cell line	sgMsh2	89340236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	360	0	0	NA	exonic	Olfr1233	nonsynonymous SNV	Olfr1233:NM_146972:exon2:c.T65C:p.L22P	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.808359816	1	0.7105287	AAG	nonsynonymous	AAG	8	AAGAAGAA	NA
M7_p20	chr2	89439637	12A2p6	cell line	sgMsh2	89439637	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	477	0	0	NA	exonic	Olfr1240	nonsynonymous SNV	Olfr1240:NM_146808:exon1:c.T641C:p.V214A	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.724253014	2	0.9999929	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89482893	12A2p6	cell line	sgMsh2	89482893	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	631	0	0	NA	exonic	Olfr1241	nonsynonymous SNV	Olfr1241:NM_146455:exon1:c.G241A:p.V81I	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.948537819	1	1.00E-09	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89493558	12A2p6	cell line	sgMsh2	89493558	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	418	0	0	NA	exonic	Olfr1242	synonymous SNV	Olfr1242:NM_146968:exon1:c.C753A:p.P251P	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.551366811	2	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr2	89528088	12A2p6	cell line	sgMsh2	89528088	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	299	0	0	NA	exonic	Olfr1243	synonymous SNV	Olfr1243:NM_146969:exon1:c.T321G:p.G107G	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.668181813	2	0.9999928	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	89609883	12A2p6	cell line	sgMsh2	89609883	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	815	0	0	NA	exonic	Olfr1247	nonsynonymous SNV	Olfr1247:NM_146966:exon1:c.C218A:p.T73N	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.556039411	2	1	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89657438	12A2p6	cell line	sgMsh2	89657438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	404	0	0	NA	exonic	Olfr1250	nonsynonymous SNV	Olfr1250:NM_146965:exon1:c.T2C:p.M1T	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.775651615	2	0.9650435	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89667270	12A2p6	cell line	sgMsh2	89667270	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	562	0	0	NA	exonic	Olfr1251	synonymous SNV	Olfr1251:NM_001011529:exon1:c.T615C:p.C205C	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	1.00E-09	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	89752487	12A2p6	cell line	sgMsh2	89752487	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	642	0	0	NA	exonic	Olfr1253	nonsynonymous SNV	Olfr1253:NM_146373:exon1:c.G340A:p.V114M	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.359790207	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	89752620	12A2p6	cell line	sgMsh2	89752620	A	G	SNV	Mutect2;MuSe;Vardict	3	0.126	917	0	0	NA	exonic	Olfr1253	synonymous SNV	Olfr1253:NM_146373:exon1:c.T207C:p.A69A	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.588747612	2	1	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	89788829	12A2p6	cell line	sgMsh2	89788829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	485	0	0	NA	exonic	Olfr1254	synonymous SNV	Olfr1254:NM_146476:exon1:c.T522C:p.H174H	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.542021611	2	1.00E-09	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	89977920	12A2p6	cell line	sgMsh2	89977920	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	390	0	0	NA	exonic	Olfr1260	synonymous SNV	Olfr1260:NM_146981:exon1:c.C141T:p.V47V	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.878448817	1	0.9999023	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr2	90002726	12A2p6	cell line	sgMsh2	90002726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	826	0	0	NA	exonic	Olfr1262	nonsynonymous SNV	Olfr1262:NM_146974:exon1:c.A319G:p.I107V	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.691544814	2	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	90139121	12A2p6	cell line	sgMsh2	90139121	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	473	0	0	NA	exonic	Olfr32	nonsynonymous SNV	Olfr32:NM_010980:exon5:c.T17G:p.V6G	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.640146213	2	1.04E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	90149482	12A2p6	cell line	sgMsh2	90149482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	467	0	0	NA	exonic	Olfr1270	nonsynonymous SNV	Olfr1270:NM_146985:exon1:c.T523C:p.Y175H	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.696217414	2	0.9999998	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91063372	12A2p6	cell line	sgMsh2	91063372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	106	0	0	NA	exonic	Slc39a13	synonymous SNV	"Slc39a13:NM_001290765:exon8:c.A897G:p.G299G,Slc39a13:NM_026721:exon8:c.A858G:p.G286G"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.710235214	2	0.8177094	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	493	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	1.00E-09	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91167871	12A2p6	cell line	sgMsh2	91167871	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	335	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon10:c.T1903G:p.S635A,Madd:NM_001177719:exon11:c.T1903G:p.S635A,Madd:NM_145527:exon11:c.T1903G:p.S635A"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.579402411	2	1.14E-09	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91263843	12A2p6	cell line	sgMsh2	91263843	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	79	0	0	NA	exonic	Pacsin3	stopgain	"Pacsin3:NM_001289677:exon9:c.T1116A:p.Y372X,Pacsin3:NM_001289678:exon10:c.T1116A:p.Y372X,Pacsin3:NM_028733:exon10:c.T1116A:p.Y372X,Pacsin3:NM_030880:exon10:c.T1116A:p.Y372X"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	0.9984424	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91265583	12A2p6	cell line	sgMsh2	91265583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	192	0	0	NA	exonic	Arfgap2	synonymous SNV	"Arfgap2:NM_001166024:exon2:c.T84C:p.D28D,Arfgap2:NM_023854:exon2:c.T84C:p.D28D"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.892466618	1	0.9983645	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr2	91278916	12A2p6	cell line	sgMsh2	91278916	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	33	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	1110051M20Rik:NM_175123:exon9:c.C863T:p.T288I	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	0.9799748	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	203	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.598092812	2	0.9999922	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91506011	12A2p6	cell line	sgMsh2	91506011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	671	0	0	NA	exonic	Lrp4	synonymous SNV	Lrp4:NM_172668:exon36:c.G5166A:p.L1722L	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.766306415	2	0.9998488	TGC	synonymous	NA	NA	NA	NA
M7_p20	chr2	91564413	12A2p6	cell line	sgMsh2	91564413	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	494	0	0	NA	exonic	Ckap5	frameshift deletion	"Ckap5:NM_029437:exon11:c.1432delT:p.L479fs*0,Ckap5:NM_001165989:exon12:c.1432delT:p.L479fs*0"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.742943415	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	91606329	12A2p6	cell line	sgMsh2	91606329	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	578	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.G4773T:p.Q1591H,Ckap5:NM_001165989:exon36:c.G4773T:p.Q1591H"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.714907814	2	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91606343	12A2p6	cell line	sgMsh2	91606343	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	638	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon35:c.A4787T:p.Y1596F,Ckap5:NM_001165989:exon36:c.A4787T:p.Y1596F"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.696217414	2	1.26E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91615851	12A2p6	cell line	sgMsh2	91615851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	174	0	0	NA	exonic	Ckap5	nonsynonymous SNV	"Ckap5:NM_029437:exon40:c.A5518G:p.I1840V,Ckap5:NM_001165989:exon41:c.A5518G:p.I1840V"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.822377616	1	0.09595987	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	91668289	12A2p6	cell line	sgMsh2	91668289	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	324	0	0	NA	exonic	Arhgap1	nonsynonymous SNV	"Arhgap1:NM_001145902:exon5:c.T530C:p.L177P,Arhgap1:NM_146124:exon5:c.T410C:p.L137P,Arhgap1:NM_001359970:exon6:c.T410C:p.L137P"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.686872214	2	0.9999853	CTC	nonsynonymous	CCCT	9	CCCTCCCTC	NA
M7_p20	chr2	91720390	12A2p6	cell line	sgMsh2	91720390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	358	0	0	NA	exonic	Harbi1	nonsynonymous SNV	"Harbi1:NM_001356518:exon3:c.C707T:p.T236I,Harbi1:NM_178724:exon3:c.C707T:p.T236I"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	1	1	1.26E-09	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	92953470	12A2p6	cell line	sgMsh2	92953470	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	183	0	0	NA	exonic	Syt13	nonsynonymous SNV	Syt13:NM_030725:exon6:c.T1084G:p.F362V	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.439224409	2	0.8609673	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	93677384	12A2p6	cell line	sgMsh2	93677384	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	64	0	0	NA	exonic	Alx4	synonymous SNV	Alx4:NM_007442:exon4:c.T1023A:p.S341S	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	2	0.864431017	1	0.9501683	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	94362443	12A2p6	cell line	sgMsh2	94362443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	135	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon15:c.A1961G:p.Q654R,Ttc17:NM_001355691:exon15:c.A1961G:p.Q654R,Ttc17:NM_183106:exon15:c.A1961G:p.Q654R"	2qE1	chr2-82255917-94430128	7	5	2	0.9	4.205340083	NA	1	0.462587409	2	0.9766986	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	97629518	12A2p6	cell line	sgMsh2	97629518	T	-	Deletion	Strelka2;Vardict	2	0.1518	112	0	0	NA	exonic	Lrrc4c	frameshift deletion	"Lrrc4c:NM_001289744:exon2:c.488delT:p.I163Tfs*16,Lrrc4c:NM_178725:exon3:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363049:exon4:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289743:exon7:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001289742:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363048:exon8:c.488delT:p.I163Tfs*16,Lrrc4c:NM_001363047:exon9:c.488delT:p.I163Tfs*16"	2qE1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.709300694	NA	NA	ATC	frameshift	NA	NA	NA	-1
M7_p20	chr2	103082989	12A2p6	cell line	sgMsh2	103082989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	177	0	0	NA	exonic	Apip	nonsynonymous SNV	"Apip:NM_001355473:exon2:c.T89C:p.L30P,Apip:NM_019735:exon2:c.T89C:p.L30P"	2qE2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999935	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	103460282	12A2p6	cell line	sgMsh2	103460282	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	127	0	0	NA	exonic	Cat	nonsynonymous SNV	Cat:NM_009804:exon10:c.T1286C:p.V429A	2qE2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9940482	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	103783163	12A2p6	cell line	sgMsh2	103783163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	257	0	0	NA	exonic	Caprin1	nonsynonymous SNV	"Caprin1:NM_001111289:exon2:c.A253G:p.R85G,Caprin1:NM_001111290:exon2:c.A253G:p.R85G,Caprin1:NM_001111292:exon2:c.A253G:p.R85G,Caprin1:NM_001111291:exon3:c.A253G:p.R85G,Caprin1:NM_016739:exon3:c.A253G:p.R85G"	2qE2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	104723147	12A2p6	cell line	sgMsh2	104723147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	727	0	0	NA	exonic	Depdc7	synonymous SNV	Depdc7:NM_144804:exon7:c.A1155G:p.V385V	2qE2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.99526382	1	1	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	106744794	12A2p6	cell line	sgMsh2	106744794	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	137	0	0	NA	exonic	Mpped2	nonsynonymous SNV	"Mpped2:NM_001143683:exon3:c.A223G:p.M75V,Mpped2:NM_001356554:exon3:c.A223G:p.M75V,Mpped2:NM_029837:exon3:c.A223G:p.M75V"	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.261665605	3	0.9999989	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	110265593	12A2p6	cell line	sgMsh2	110265593	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	161	0	0	NA	exonic	Bbox1	nonsynonymous SNV	Bbox1:NM_130452:exon7:c.A1025T:p.N342I	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.831722816	1	0.936567	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	110616679	12A2p6	cell line	sgMsh2	110616679	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	141	0	0	NA	exonic	Slc5a12	frameshift deletion	"Slc5a12:NM_001003915:exon5:c.531delT:p.L178fs*0,Slc5a12:NM_001177624:exon5:c.531delT:p.L178fs*0"	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	G	6	GGGGGG	-1
M7_p20	chr2	111105990	12A2p6	cell line	sgMsh2	111105990	T	-	Deletion	Mutect2;Vardict	2	0.216	57	0	0	NA	exonic	A26c3	frameshift deletion	A26c3:NM_001378593:exon50:c.3629delA:p.N1210Ifs*31	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr2	111134225	12A2p6	cell line	sgMsh2	111134225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	237	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon38:c.A2819G:p.N940S	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	111170296	12A2p6	cell line	sgMsh2	111170296	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	225	0	0	NA	exonic	A26c3	nonsynonymous SNV	A26c3:NM_001378593:exon20:c.G1693T:p.A565S	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999996	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	111190394	12A2p6	cell line	sgMsh2	111190394	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.327	122	0	0	NA	exonic	A26c3	frameshift insertion	A26c3:NM_001378593:exon17:c.1483dupT:p.S495Ffs*1	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M7_p20	chr2	111329077	12A2p6	cell line	sgMsh2	111329077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	485	0	0	NA	exonic	Olfr1281	synonymous SNV	Olfr1281:NM_001005568:exon1:c.T657A:p.T219T	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	1.00E-09	CTT	synonymous	CTTATA	12	CTTATACTTATA	NA
M7_p20	chr2	111409289	12A2p6	cell line	sgMsh2	111409289	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	176	0	0	NA	exonic	Olfr1285	nonsynonymous SNV	Olfr1285:NM_001370925:exon1:c.A786G:p.I262M	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999931	TAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr2	111449611	12A2p6	cell line	sgMsh2	111449611	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	1034	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.T470C:p.M157T	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	1	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	111537918	12A2p6	cell line	sgMsh2	111537918	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	499	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.G370C:p.V124L	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	1.00E-09	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	112071871	12A2p6	cell line	sgMsh2	112071871	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	244	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T711A:p.S237S	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.873776217	1	0.9979561	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	112072201	12A2p6	cell line	sgMsh2	112072201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	412	0	0	NA	exonic	Olfr1313	synonymous SNV	Olfr1313:NM_207150:exon1:c.T381C:p.C127C	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	1.01E-09	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	112091992	12A2p6	cell line	sgMsh2	112091992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	472	0	0	NA	exonic	Olfr1314	synonymous SNV	Olfr1314:NM_146450:exon1:c.T708C:p.A236A	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	1.00E-09	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	112130499	12A2p6	cell line	sgMsh2	112130499	A	G	SNV	Mutect2;MuSe;Vardict	3	0.129	599	0	0	NA	exonic	Olfr1316	nonsynonymous SNV	Olfr1316:NM_146742:exon1:c.T317C:p.I106T	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.602765412	2	1	GAT	nonsynonymous	ATGG	9	ATGGATGGA	NA
M7_p20	chr2	112266999	12A2p6	cell line	sgMsh2	112266999	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	66	0	0	NA	exonic	Slc12a6	nonsynonymous SNV	"Slc12a6:NM_001362700:exon1:c.A178T:p.M60L,Slc12a6:NM_133649:exon1:c.A178T:p.M60L"	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9967828	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	97	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	3	1	1	0.9994302	AAC	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr2	112957291	12A2p6	cell line	sgMsh2	112957291	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	154	0	0	NA	exonic	Ryr3	synonymous SNV	Ryr3:NM_001319156:exon7:c.G555A:p.S185S	2qE3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.794342016	1	0.7085791	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr2	113833515	12A2p6	cell line	sgMsh2	113833515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	177	0	0	NA	exonic	Arhgap11a	nonsynonymous SNV	Arhgap11a:NM_181416:exon12:c.A2422G:p.T808A	2qE4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9993568	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	114101619	12A2p6	cell line	sgMsh2	114101619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	38	0	0	NA	exonic	Aqr	synonymous SNV	Aqr:NM_009702:exon35:c.A4266G:p.T1422T	2qE4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9847852	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	114101645	12A2p6	cell line	sgMsh2	114101645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	45	0	0	NA	exonic	Aqr	nonsynonymous SNV	Aqr:NM_009702:exon35:c.A4240G:p.T1414A	2qE4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.901811818	1	0.9607881	GTT	nonsynonymous	TTC	10	TTCTTCTTCT	NA
M7_p20	chr2	114195809	12A2p6	cell line	sgMsh2	114195809	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	196	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A1778C:p.K593T	2qE4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999978	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	117153037	12A2p6	cell line	sgMsh2	117153037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	195	0	0	NA	exonic	Spred1	synonymous SNV	"Spred1:NM_001277256:exon2:c.C78T:p.D26D,Spred1:NM_033524:exon2:c.C78T:p.D26D"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999976	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	158	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9999531	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	118927583	12A2p6	cell line	sgMsh2	118927583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	103	0	0	NA	exonic	Chst14	nonsynonymous SNV	Chst14:NM_028117:exon1:c.A932G:p.E311G	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.8968026	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119022129	12A2p6	cell line	sgMsh2	119022129	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	151	0	0	NA	exonic	Ccdc32	nonsynonymous SNV	Ccdc32:NM_199310:exon3:c.G341A:p.R114Q	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999722	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119069078	12A2p6	cell line	sgMsh2	119069078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	127	0	0	NA	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1259T:p.K420M,Knl1:NM_029617:exon8:c.A1259T:p.K420M"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.761633815	2	0.5473564	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119069506	12A2p6	cell line	sgMsh2	119069506	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	206	0	0	NA	exonic	Knl1	nonsynonymous SNV	"Knl1:NM_001362732:exon8:c.A1687G:p.S563G,Knl1:NM_029617:exon8:c.A1687G:p.S563G"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.967228219	1	0.9999897	AAG	nonsynonymous	TAAGT	17	TAAGTTAAGTCAAGTTA	NA
M7_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	93	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7_p20	chr2	119210530	12A2p6	cell line	sgMsh2	119210530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	63	0	0	NA	exonic	Zfyve19	nonsynonymous SNV	"Zfyve19:NM_001164827:exon2:c.T103C:p.F35L,Zfyve19:NM_028054:exon2:c.T103C:p.F35L"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9961974	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119270688	12A2p6	cell line	sgMsh2	119270688	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	108	0	0	NA	exonic	Rhov	synonymous SNV	Rhov:NM_145530:exon2:c.A261T:p.A87A	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996919	CTG	synonymous	CCTGC	10	CCTGCCCTGC	NA
M7_p20	chr2	119270711	12A2p6	cell line	sgMsh2	119270711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	106	0	0	NA	exonic	Rhov	stopgain	Rhov:NM_145530:exon2:c.C238T:p.R80X	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996555	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119293418	12A2p6	cell line	sgMsh2	119293418	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	47	0	0	NA	exonic	Vps18	synonymous SNV	Vps18:NM_172269:exon4:c.T825C:p.P275P	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.9672491	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	119749813	12A2p6	cell line	sgMsh2	119749813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	72	0	0	NA	exonic	Itpka	nonsynonymous SNV	Itpka:NM_146125:exon4:c.A938G:p.Y313C	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9976978	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119751679	12A2p6	cell line	sgMsh2	119751679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	29	0	0	NA	exonic	Ltk	nonsynonymous SNV	"Ltk:NM_008523:exon14:c.A1654G:p.R552G,Ltk:NM_206941:exon15:c.A1837G:p.R613G,Ltk:NM_206942:exon19:c.A2407G:p.R803G,Ltk:NM_203345:exon20:c.A2590G:p.R864G"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9750797	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	44	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.827050216	1	0.8964603	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	119812947	12A2p6	cell line	sgMsh2	119812947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	96	0	0	NA	exonic	Tyro3	synonymous SNV	"Tyro3:NM_019392:exon17:c.T2100C:p.T700T,Tyro3:NM_001290800:exon18:c.T2088C:p.T696T"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8824535	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	120048394	12A2p6	cell line	sgMsh2	120048394	C	-	Deletion	Strelka2;Vardict	2	0.2	35	0	0	NA	exonic	Sptbn5	frameshift deletion	Sptbn5:NM_001370938:exon57:c.9367delG:p.E3123Rfs*22	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.934520019	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7_p20	chr2	120191246	12A2p6	cell line	sgMsh2	120191246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	102	0	0	NA	exonic	Pla2g4e	nonsynonymous SNV	"Pla2g4e:NM_177845:exon3:c.T380C:p.L127P,Pla2g4e:NM_001363090:exon4:c.T113C:p.L38P"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9995691	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	120524479	12A2p6	cell line	sgMsh2	120524479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	56	0	0	NA	exonic	Zfp106	synonymous SNV	Zfp106:NM_011743:exon11:c.T3879C:p.S1293S	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9943856	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	120533940	12A2p6	cell line	sgMsh2	120533941	TT	CC	DBS	Mutect2;Vardict	2	0.197	140	0	0	NA	exonic	Zfp106	nonframeshift substitution	Zfp106:NM_011743:exon5:c.2053_2054GG:p.N685G	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.920502218	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	120607915	12A2p6	cell line	sgMsh2	120607915	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	108	0	0	NA	exonic	Lrrc57	frameshift deletion	"Lrrc57:NM_001159609:exon4:c.451delC:p.Q151Sfs*3,Lrrc57:NM_001159610:exon4:c.502delC:p.Q168Sfs*3,Lrrc57:NM_001159612:exon4:c.376delC:p.Q126Sfs*3,Lrrc57:NM_025657:exon4:c.376delC:p.Q126Sfs*3"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7_p20	chr2	120677961	12A2p6	cell line	sgMsh2	120677961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	236	0	0	NA	exonic	Stard9	nonsynonymous SNV	Stard9:NM_001370940:exon10:c.A749G:p.N250S	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.831722816	1	0.9522898	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	120719193	12A2p6	cell line	sgMsh2	120719193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	140	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon27:c.A3542G:p.H1181R	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.943865219	1	0.9994191	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	120947880	12A2p6	cell line	sgMsh2	120947880	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	52	0	0	NA	exonic	Ubr1	nonsynonymous SNV	Ubr1:NM_009461:exon6:c.T676C:p.Y226H	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.462587409	2	0.8908678	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	120955715	12A2p6	cell line	sgMsh2	120955715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	48	0	0	NA	exonic	Ubr1	synonymous SNV	Ubr1:NM_009461:exon4:c.T423C:p.H141H	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9912455	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	121021461	12A2p6	cell line	sgMsh2	121021461	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	70	0	0	NA	exonic	Epb42	frameshift deletion	Epb42:NM_013513:exon12:c.1851delC:p.M618Cfs*50	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.934520019	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7_p20	chr2	121343482	12A2p6	cell line	sgMsh2	121343482	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	258	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon10:c.G1157T:p.G386V	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.841068017	1	0.978665	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	121348531	12A2p6	cell line	sgMsh2	121348531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	325	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon7:c.G713A:p.S238N	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	2.65E-09	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	121548711	12A2p6	cell line	sgMsh2	121548711	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	60	0	0	NA	exonic	Frmd5	nonsynonymous SNV	Frmd5:NM_001360084:exon14:c.A1657G:p.R553G	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9955059	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	122059523	12A2p6	cell line	sgMsh2	122059523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon34:c.T6337C:p.F2113L	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996357	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	122108151	12A2p6	cell line	sgMsh2	122108151	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	43	0	0	NA	exonic	Spg11	nonsynonymous SNV	Spg11:NM_145531:exon6:c.T1321C:p.C441R	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9884537	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	122123858	12A2p6	cell line	sgMsh2	122123858	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	254	0	0	NA	exonic	Patl2	nonsynonymous SNV	Patl2:NM_026251:exon15:c.G1231A:p.G411S	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.766306415	2	0.88685	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	122283210	12A2p6	cell line	sgMsh2	122283210	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	145	0	0	NA	exonic	Duox2	nonsynonymous SNV	Duox2:NM_001362755:exon28:c.T3689G:p.I1230S	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999611	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M7_p20	chr2	122349395	12A2p6	cell line	sgMsh2	122349395	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	59	0	0	NA	exonic	Shf	nonsynonymous SNV	"Shf:NM_001013829:exon6:c.A675T:p.E225D,Shf:NM_001374011:exon7:c.A1410T:p.E470D"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9952486	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	122799964	12A2p6	cell line	sgMsh2	122799964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	127	0	0	NA	exonic	Sqor	nonsynonymous SNV	"Sqor:NM_001162503:exon6:c.T857C:p.V286A,Sqor:NM_021507:exon6:c.T857C:p.V286A"	2qE5	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.9965544	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	125083128	12A2p6	cell line	sgMsh2	125083128	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	273	0	0	NA	exonic	Slc24a5	nonsynonymous SNV	Slc24a5:NM_175034:exon6:c.C688T:p.P230S	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.831722816	1	0.9586105	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	125377880	12A2p6	cell line	sgMsh2	125377880	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	204	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon17:c.T2026C:p.L676L	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.9994842	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	125771416	12A2p6	cell line	sgMsh2	125771416	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	241	0	0	NA	exonic	Secisbp2l	synonymous SNV	Secisbp2l:NM_177608:exon4:c.G657A:p.Q219Q	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.9998106	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr2	126459694	12A2p6	cell line	sgMsh2	126459694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	264	0	0	NA	exonic	Atp8b4	nonsynonymous SNV	"Atp8b4:NM_001080944:exon5:c.T245C:p.I82T,Atp8b4:NM_001359975:exon5:c.T245C:p.I82T"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	5.11E-08	AAT	nonsynonymous	TGG	8	TGGTGGTG	NA
M7_p20	chr2	126650133	12A2p6	cell line	sgMsh2	126650133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	141	0	0	NA	exonic	Gabpb1	nonsynonymous SNV	"Gabpb1:NM_001355108:exon5:c.T437C:p.V146A,Gabpb1:NM_001271468:exon6:c.T632C:p.V211A,Gabpb1:NM_001271492:exon6:c.T632C:p.V211A,Gabpb1:NM_010249:exon6:c.T632C:p.V211A,Gabpb1:NM_207669:exon6:c.T632C:p.V211A,Gabpb1:NM_001271467:exon7:c.T632C:p.V211A,Gabpb1:NM_001271470:exon7:c.T632C:p.V211A,Gabpb1:NM_001355109:exon7:c.T632C:p.V211A"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999513	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	127086860	12A2p6	cell line	sgMsh2	127086860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	169	0	0	NA	exonic	Blvra	synonymous SNV	Blvra:NM_026678:exon5:c.T267C:p.A89A	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9942916	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	127226396	12A2p6	cell line	sgMsh2	127226396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	134	0	0	NA	exonic	Snrnp200	synonymous SNV	Snrnp200:NM_177214:exon20:c.G2655A:p.Q885Q	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.999928	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	310	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.920502218	1	0.9999923	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	111	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.850413217	1	0.9581597	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	127804943	12A2p6	cell line	sgMsh2	127804943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	185	0	0	NA	exonic	Bub1	nonsynonymous SNV	"Bub1:NM_001113179:exon21:c.T2416C:p.F806L,Bub1:NM_009772:exon21:c.T2413C:p.F805L"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9997029	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.262	331	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	130244507	12A2p6	cell line	sgMsh2	130244507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	114	0	0	NA	exonic	Tmc2	nonsynonymous SNV	Tmc2:NM_138655:exon14:c.A1699G:p.R567G	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.943865219	1	0.9984165	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	130600458	12A2p6	cell line	sgMsh2	130600458	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	52	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon4:c.G308A:p.G103D,Ubox5:NM_080562:exon4:c.G308A:p.G103D,Ubox5:NM_001255993:exon5:c.G308A:p.G103D"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	3	1	1	0.992988	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	130615776	12A2p6	cell line	sgMsh2	130615776	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	73	0	0	NA	exonic	Fastkd5	stopgain	"Fastkd5:NM_001377124:exon2:c.T758A:p.L253X,Fastkd5:NM_001377125:exon2:c.T758A:p.L253X,Fastkd5:NM_001146084:exon3:c.T758A:p.L253X,Fastkd5:NM_198176:exon3:c.T758A:p.L253X"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9978227	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	130635087	12A2p6	cell line	sgMsh2	130635087	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	20	0	0	NA	exonic	Lzts3	synonymous SNV	"Lzts3:NM_001291027:exon5:c.G1719A:p.E573E,Lzts3:NM_001291028:exon5:c.G1440A:p.E480E,Lzts3:NM_197945:exon5:c.G1782A:p.E594E"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	3	1	1	0.9594315	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr2	130994169	12A2p6	cell line	sgMsh2	130994169	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	355	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon20:c.A3368T:p.K1123M	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	1.31E-09	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	54	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.775651615	1	0.7905414	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	132058256	12A2p6	cell line	sgMsh2	132058256	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	244	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	"Slc23a2:NM_001355430:exon15:c.C1658T:p.T553I,Slc23a2:NM_018824:exon15:c.C1658T:p.T553I"	2qF2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999998	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	179	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9983015	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	136880855	12A2p6	cell line	sgMsh2	136880855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	144	0	0	NA	exonic	Mkks	synonymous SNV	"Mkks:NM_001141946:exon3:c.T381C:p.C127C,Mkks:NM_001286981:exon3:c.T381C:p.C127C,Mkks:NM_021527:exon3:c.T381C:p.C127C"	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.841068017	1	0.9543042	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	138284030	12A2p6	cell line	sgMsh2	138284030	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	73	0	0	NA	exonic	Btbd3	nonsynonymous SNV	"Btbd3:NM_145534:exon4:c.T1133C:p.L378P,Btbd3:NM_001025431:exon5:c.T926C:p.L309P"	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.392498408	3	0.6387704	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	139546415	12A2p6	cell line	sgMsh2	139546415	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	78	0	0	NA	exonic	Sptlc3	nonsynonymous SNV	"Sptlc3:NM_001356507:exon3:c.A326G:p.D109G,Sptlc3:NM_175467:exon4:c.A326G:p.D109G"	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9983529	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	140129235	12A2p6	cell line	sgMsh2	140129235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	280	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon11:c.A1985G:p.N662S	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	2.15E-08	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	140167949	12A2p6	cell line	sgMsh2	140167949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	61	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon2:c.A466G:p.S156G	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9898095	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	140240982	12A2p6	cell line	sgMsh2	140240982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	319	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon18:c.A1735G:p.S579G	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	3.31E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	140266361	12A2p6	cell line	sgMsh2	140266361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	133	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon6:c.A602G:p.K201R	2qF3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999239	CTT	nonsynonymous	CTTGG	10	CTTGGCTTGG	NA
M7_p20	chr2	142707307	12A2p6	cell line	sgMsh2	142707307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	109	0	0	NA	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon20:c.T3287C:p.L1096S,Kif16b:NM_001355123:exon21:c.T3320C:p.L1107S"	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9997087	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	143858116	12A2p6	cell line	sgMsh2	143858116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	329	0	0	NA	exonic	Bfsp1	nonsynonymous SNV	"Bfsp1:NM_001291061:exon2:c.T358C:p.Y120H,Bfsp1:NM_009751:exon2:c.T358C:p.Y120H"	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	2.32E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	144594154	12A2p6	cell line	sgMsh2	144594154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	104	0	0	NA	exonic	Smim26	nonsynonymous SNV	Smim26:NM_001033297:exon1:c.T64C:p.W22R	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996147	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	145919977	12A2p6	cell line	sgMsh2	145919977	A	G	SNV	Mutect2;MuSe;Vardict	3	0.199	34	0	0	NA	exonic	Crnkl1	synonymous SNV	Crnkl1:NM_025820:exon13:c.T1659C:p.S553S	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.929847418	1	0.9612371	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	146412145	12A2p6	cell line	sgMsh2	146412145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	50	0	0	NA	exonic	Ralgapa2	synonymous SNV	Ralgapa2:NM_001033348:exon18:c.T2353C:p.L785L	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9921647	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	146449255	12A2p6	cell line	sgMsh2	146449255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	118	0	0	NA	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon8:c.T760C:p.F254L	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998239	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	146460717	12A2p6	cell line	sgMsh2	146460717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	220	0	0	NA	exonic	Ralgapa2	nonsynonymous SNV	Ralgapa2:NM_001033348:exon4:c.A325G:p.I109V	2qG1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999994	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	147029768	12A2p6	cell line	sgMsh2	147029768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	140	0	0	NA	exonic	Xrn2	nonsynonymous SNV	"Xrn2:NM_001356402:exon11:c.T611C:p.V204A,Xrn2:NM_001356403:exon12:c.T416C:p.V139A,Xrn2:NM_011917:exon12:c.T1109C:p.V370A"	2qG2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999485	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	148688061	12A2p6	cell line	sgMsh2	148688061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	212	0	0	NA	exonic	Gzf1	nonsynonymous SNV	"Gzf1:NM_001355689:exon4:c.T1511C:p.L504S,Gzf1:NM_028986:exon4:c.T1511C:p.L504S"	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999991	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	149899704	12A2p6	cell line	sgMsh2	149899704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	168	0	0	NA	exonic	Syndig1	nonsynonymous SNV	"Syndig1:NM_001085521:exon2:c.T209C:p.V70A,Syndig1:NM_001363096:exon2:c.T209C:p.V70A,Syndig1:NM_001363094:exon3:c.T209C:p.V70A,Syndig1:NM_001363095:exon3:c.T209C:p.V70A"	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.0965535	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	150324034	12A2p6	cell line	sgMsh2	150324034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	166	0	0	NA	exonic	Gm10130	nonsynonymous SNV	Gm10130:NM_001374676:exon3:c.T137C:p.V46A	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.999988	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	150587016	12A2p6	cell line	sgMsh2	150587016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	115	0	0	NA	exonic	Apmap	nonsynonymous SNV	"Apmap:NM_027977:exon6:c.T686C:p.V229A,Apmap:NM_001356491:exon7:c.T458C:p.V153A,Apmap:NM_001356492:exon7:c.T101C:p.V34A"	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9997917	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	150625060	12A2p6	cell line	sgMsh2	150625060	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	192	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon11:c.C1616T:p.T539M	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999972	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	150637979	12A2p6	cell line	sgMsh2	150637979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	108	0	0	NA	exonic	Acss1	synonymous SNV	Acss1:NM_080575:exon5:c.T807C:p.P269P	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996919	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr2	150667960	12A2p6	cell line	sgMsh2	150667960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	30	0	0	NA	exonic	Acss1	nonsynonymous SNV	Acss1:NM_080575:exon1:c.T238C:p.Y80H	2qG3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9764031	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	153000138	12A2p6	cell line	sgMsh2	153000138	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	142	0	0	NA	exonic	Ttll9	nonsynonymous SNV	"Ttll9:NM_001355717:exon10:c.T725A:p.L242Q,Ttll9:NM_001355719:exon11:c.T725A:p.L242Q,Ttll9:NM_001083618:exon12:c.T911A:p.L304Q,Ttll9:NM_001355720:exon12:c.T629A:p.L210Q,Ttll9:NM_029064:exon12:c.T911A:p.L304Q"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.999954	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	153194353	12A2p6	cell line	sgMsh2	153194353	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	100	0	0	NA	exonic	Tm9sf4	nonsynonymous SNV	Tm9sf4:NM_133847:exon10:c.T1034C:p.L345P	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9995182	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	153261424	12A2p6	cell line	sgMsh2	153261424	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	97	0	0	NA	exonic	Pofut1	nonsynonymous SNV	Pofut1:NM_080463:exon6:c.A977T:p.Q326L	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9994302	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	153932715	12A2p6	cell line	sgMsh2	153932715	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	251	0	0	NA	exonic	Bpifb3	nonsynonymous SNV	"Bpifb3:NM_001379473:exon16:c.T1400C:p.V467A,Bpifb3:NM_194357:exon16:c.T1400C:p.V467A"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999999	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	154521212	12A2p6	cell line	sgMsh2	154521212	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	171	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_001285446:exon7:c.T357C:p.A119A,Cbfa2t2:NM_009823:exon7:c.T1008C:p.A336A,Cbfa2t2:NM_172860:exon7:c.T1008C:p.A336A"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8800686	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr2	154877775	12A2p6	cell line	sgMsh2	154877775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	185	0	0	NA	exonic	Eif2s2	synonymous SNV	Eif2s2:NM_026030:exon6:c.T573C:p.D191D	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.799014616	1	0.7155124	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr2	155414879	12A2p6	cell line	sgMsh2	155414879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	165	0	0	NA	exonic	Ncoa6	nonsynonymous SNV	"Ncoa6:NM_001242558:exon8:c.A2743G:p.T915A,Ncoa6:NM_019825:exon8:c.A2743G:p.T915A"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999873	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	155653508	12A2p6	cell line	sgMsh2	155653508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	114	0	0	NA	exonic	Trpc4ap	nonsynonymous SNV	"Trpc4ap:NM_001163452:exon8:c.T1036C:p.S346P,Trpc4ap:NM_019828:exon8:c.T1036C:p.S346P"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997797	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	155815849	12A2p6	cell line	sgMsh2	155815849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	113	0	0	NA	exonic	Mmp24	nonsynonymous SNV	Mmp24:NM_010808:exon9:c.G1658A:p.R553Q	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997671	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	155979285	12A2p6	cell line	sgMsh2	155979285	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	109	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon19:c.A2791G:p.S931G,Cep250:NM_001130000:exon19:c.A2794G:p.S932G,Cep250:NM_008383:exon20:c.A2731G:p.S911G,Cep250:NM_177217:exon20:c.A2731G:p.S911G"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997087	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	155986018	12A2p6	cell line	sgMsh2	155986018	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	34	0	0	NA	exonic	Cep250	nonsynonymous SNV	"Cep250:NM_001129999:exon24:c.A3548T:p.E1183V,Cep250:NM_001130000:exon24:c.A3551T:p.E1184V,Cep250:NM_008383:exon25:c.A3488T:p.E1163V,Cep250:NM_177217:exon25:c.A3488T:p.E1163V"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9810433	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	156096428	12A2p6	cell line	sgMsh2	156096428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	65	0	0	NA	exonic	Rbm12	nonsynonymous SNV	"Rbm12:NM_029397:exon3:c.A1923G:p.I641M,Rbm12:NM_170598:exon3:c.A1923G:p.I641M"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9965984	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	156144569	12A2p6	cell line	sgMsh2	156144569	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	34	0	0	NA	exonic	Romo1	synonymous SNV	"Romo1:NM_025946:exon1:c.C111T:p.F37F,Romo1:NM_001164216:exon2:c.C111T:p.F37F,Romo1:NM_001164217:exon2:c.C111T:p.F37F"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9810433	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr2	156514114	12A2p6	cell line	sgMsh2	156514114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	71	0	0	NA	exonic	Epb41l1	synonymous SNV	"Epb41l1:NM_001006664:exon14:c.A1572G:p.K524K,Epb41l1:NM_001291121:exon14:c.A1536G:p.K512K,Epb41l1:NM_001291122:exon14:c.A1536G:p.K512K,Epb41l1:NM_001291123:exon14:c.A1533G:p.K511K,Epb41l1:NM_001368802:exon14:c.A1569G:p.K523K,Epb41l1:NM_001368804:exon14:c.A1572G:p.K524K,Epb41l1:NM_013510:exon14:c.A1572G:p.K524K,Epb41l1:NM_001291120:exon15:c.A1572G:p.K524K,Epb41l1:NM_001368800:exon15:c.A1569G:p.K523K,Epb41l1:NM_001368801:exon15:c.A1548G:p.K516K,Epb41l1:NM_001368803:exon15:c.A1572G:p.K524K"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9975657	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr2	156748402	12A2p6	cell line	sgMsh2	156748402	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	83	0	0	NA	exonic	Dlgap4	nonsynonymous SNV	"Dlgap4:NM_001042487:exon3:c.A464G:p.Q155R,Dlgap4:NM_001277187:exon8:c.A2030G:p.Q677R,Dlgap4:NM_146128:exon9:c.A2081G:p.Q694R"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.48127781	2	0.9777601	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	157169951	12A2p6	cell line	sgMsh2	157169951	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	201	0	0	NA	exonic	Rbl1	nonsynonymous SNV	Rbl1:NM_011249:exon15:c.A2083T:p.I695F	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999983	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	157295373	12A2p6	cell line	sgMsh2	157295373	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	223	0	0	NA	exonic	Rpn2	nonsynonymous SNV	"Rpn2:NM_001355163:exon6:c.A675C:p.E225D,Rpn2:NM_001355164:exon6:c.A666C:p.E222D,Rpn2:NM_001355165:exon6:c.A21C:p.E7D,Rpn2:NM_019642:exon6:c.A675C:p.E225D"	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9978826	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	158117811	12A2p6	cell line	sgMsh2	158117811	C	T	SNV	Mutect2;Vardict	2	0.103	40	0	0	NA	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon13:c.G2051A:p.G684D	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.48127781	2	0.8375013	GCC	nonsynonymous	GGCCG	10	GGCCGGGCCG	NA
M7_p20	chr2	158120220	12A2p6	cell line	sgMsh2	158120220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	64	0	0	NA	exonic	Tgm2	nonsynonymous SNV	Tgm2:NM_009373:exon11:c.A1678G:p.I560V	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9964035	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	32	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9788474	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	160715046	12A2p6	cell line	sgMsh2	160715046	-	T	Insertion	Mutect2;Vardict	2	0.169	58	0	0	NA	exonic	Top1	frameshift insertion	Top1:NM_009408:exon16:c.1646dupT:p.K551fs*0	2qH2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.789669416	NA	NA	GGT	frameshift	T	5	TTTTT	1
M7_p20	chr2	160753658	12A2p6	cell line	sgMsh2	160753658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	92	0	0	NA	exonic	Plcg1	nonsynonymous SNV	Plcg1:NM_021280:exon16:c.T1525C:p.Y509H	2qH2	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.9894013	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	163376334	12A2p6	cell line	sgMsh2	163376334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	46	0	0	NA	exonic	Jph2	nonsynonymous SNV	"Jph2:NM_021566:exon2:c.T421C:p.Y141H,Jph2:NM_001205076:exon3:c.T421C:p.Y141H"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9902196	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	163566193	12A2p6	cell line	sgMsh2	163566193	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	106	0	0	NA	exonic	Hnf4a	nonsynonymous SNV	"Hnf4a:NM_008261:exon8:c.A965G:p.Y322C,Hnf4a:NM_001312906:exon9:c.A890G:p.Y297C,Hnf4a:NM_001312907:exon9:c.A890G:p.Y297C"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996555	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	164025647	12A2p6	cell line	sgMsh2	164025647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	87	0	0	NA	exonic	Pabpc1l	nonsynonymous SNV	Pabpc1l:NM_001114079:exon1:c.A167G:p.Y56C	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9990037	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	164215417	12A2p6	cell line	sgMsh2	164215417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	208	0	0	NA	exonic	Wfdc15b	nonsynonymous SNV	"Wfdc15b:NM_001045554:exon2:c.A53G:p.N18S,Wfdc15b:NM_138685:exon2:c.A53G:p.N18S"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999989	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	164392924	12A2p6	cell line	sgMsh2	164392924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	83	0	0	NA	exonic	Matn4	synonymous SNV	"Matn4:NM_001252563:exon9:c.A1626G:p.P542P,Matn4:NM_013592:exon9:c.A1626G:p.P542P"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9987542	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr2	164404506	12A2p6	cell line	sgMsh2	164404506	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	30	0	0	NA	exonic	Rbpjl	nonsynonymous SNV	Rbpjl:NM_009036:exon2:c.A70C:p.S24R	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9764031	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	164820502	12A2p6	cell line	sgMsh2	164820502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	158	0	0	NA	exonic	Zswim3	nonsynonymous SNV	Zswim3:NM_178375:exon2:c.C901T:p.L301F	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999812	TCT	nonsynonymous	CTCTC	10	CTCTCCTCTC	NA
M7_p20	chr2	164889100	12A2p6	cell line	sgMsh2	164889100	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	67	0	0	NA	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon11:c.T1223C:p.V408A,Pcif1:NM_001374127:exon12:c.T1172C:p.V391A,Pcif1:NM_001374128:exon12:c.T1172C:p.V391A,Pcif1:NM_146129:exon12:c.T1172C:p.V391A"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.887794018	1	0.9699135	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	164889684	12A2p6	cell line	sgMsh2	164889684	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	145	0	0	NA	exonic	Pcif1	nonsynonymous SNV	"Pcif1:NM_001374126:exon13:c.T1607A:p.F536Y,Pcif1:NM_001374127:exon14:c.T1556A:p.F519Y,Pcif1:NM_001374128:exon14:c.T1556A:p.F519Y,Pcif1:NM_146129:exon14:c.T1556A:p.F519Y"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999611	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	165353130	12A2p6	cell line	sgMsh2	165353130	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	48	0	0	NA	exonic	Zfp663	nonsynonymous SNV	"Zfp663:NM_001379475:exon5:c.A1168T:p.T390S,Zfp663:NM_001379476:exon5:c.A1060T:p.T354S,Zfp663:NM_001005425:exon6:c.A1168T:p.T390S,Zfp663:NM_001379474:exon6:c.A1168T:p.T390S"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9912455	GTT	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr2	165380247	12A2p6	cell line	sgMsh2	165380247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	92	0	0	NA	exonic	Zfp334	synonymous SNV	Zfp334:NM_178411:exon5:c.A1875G:p.K625K	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.962555619	1	0.9978227	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	165685599	12A2p6	cell line	sgMsh2	165685599	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	115	0	0	NA	exonic	Eya2	nonsynonymous SNV	"Eya2:NM_001271962:exon4:c.A188G:p.Y63C,Eya2:NM_001271963:exon4:c.A188G:p.Y63C,Eya2:NM_010165:exon4:c.A188G:p.Y63C"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.971900819	1	0.9994358	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	166863660	12A2p6	cell line	sgMsh2	166863660	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	129	0	0	NA	exonic	Arfgef2	nonsynonymous SNV	Arfgef2:NM_001085495:exon20:c.G2810A:p.R937H	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999048	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	168182309	12A2p6	cell line	sgMsh2	168182309	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.328	142	0	0	NA	exonic	Adnp	frameshift deletion	"Adnp:NM_001310088:exon3:c.2381delA:p.K794Rfs*10,Adnp:NM_009628:exon4:c.3065delA:p.K1022Rfs*10,Adnp:NM_001310086:exon5:c.3065delA:p.K1022Rfs*10"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M7_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	316	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	3.74E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	170496688	12A2p6	cell line	sgMsh2	170496688	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.429	6	0	0	NA	exonic	Cyp24a1	synonymous SNV	Cyp24a1:NM_009996:exon1:c.A87G:p.T29T	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9132446	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	127	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9998935	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	172445350	12A2p6	cell line	sgMsh2	172445350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	246	0	0	NA	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon3:c.T188C:p.I63T	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	172468763	12A2p6	cell line	sgMsh2	172468763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	91	0	0	NA	exonic	Rtf2	nonsynonymous SNV	Rtf2:NM_025542:exon9:c.T913C:p.Y305H	2qH3	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.640146213	2	0.9510318	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	174345240	12A2p6	cell line	sgMsh2	174345240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	155	0	0	NA	exonic	Gnas	nonsynonymous SNV	"Gnas:NM_001077507:exon7:c.T2773C:p.C925R,Gnas:NM_001077510:exon7:c.T556C:p.C186R,Gnas:NM_001364030:exon7:c.T553C:p.C185R,Gnas:NM_010309:exon8:c.T2815C:p.C939R,Gnas:NM_201616:exon8:c.T598C:p.C200R,Gnas:NM_001310083:exon9:c.T598C:p.C200R"	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999778	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	174423440	12A2p6	cell line	sgMsh2	174423440	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	178	0	0	NA	exonic	Nelfcd	nonsynonymous SNV	Nelfcd:NM_020580:exon7:c.A752G:p.Q251R	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.308391606	3	0.9999978	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	174648180	12A2p6	cell line	sgMsh2	174648180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	226	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon2:c.C3739T:p.R1247C	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999996	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	347	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	1.48E-09	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	178460063	12A2p6	cell line	sgMsh2	178460063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	267	0	0	NA	exonic	Cdh26	synonymous SNV	"Cdh26:NM_001291189:exon5:c.T474C:p.P158P,Cdh26:NM_198656:exon5:c.T474C:p.P158P"	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999991	CTA	synonymous	T	5	TTTTT	NA
M7_p20	chr2	178477681	12A2p6	cell line	sgMsh2	178477681	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	185	0	0	NA	exonic	Cdh26	synonymous SNV	Cdh26:NM_198656:exon13:c.T1992C:p.T664T	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999958	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr2	180052506	12A2p6	cell line	sgMsh2	180052506	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	64	0	0	NA	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon2:c.T112C:p.Y38H	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9964035	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	180058120	12A2p6	cell line	sgMsh2	180058120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	174	0	0	NA	exonic	Ss18l1	nonsynonymous SNV	Ss18l1:NM_178750:exon7:c.T772C:p.Y258H	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999923	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	180145179	12A2p6	cell line	sgMsh2	180145179	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	132	0	0	NA	exonic	Osbpl2	nonsynonymous SNV	Osbpl2:NM_144500:exon6:c.T484G:p.L162V	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.654164013	2	0.9905625	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	180202253	12A2p6	cell line	sgMsh2	180202253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	143	0	0	NA	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon8:c.G1114A:p.D372N	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999565	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	180225576	12A2p6	cell line	sgMsh2	180225576	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.198	20	0	0	NA	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon1:c.G227A:p.R76H	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9371138	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	180258378	12A2p6	cell line	sgMsh2	180258378	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	244	0	0	NA	exonic	Rps21	synonymous SNV	"Rps21:NM_001355516:exon5:c.G243A:p.K81K,Rps21:NM_001355517:exon6:c.G243A:p.K81K,Rps21:NM_001355518:exon6:c.G243A:p.K81K,Rps21:NM_001355520:exon6:c.G243A:p.K81K,Rps21:NM_001355521:exon6:c.G243A:p.K81K,Rps21:NM_025587:exon6:c.G243A:p.K81K"	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999998	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr2	180606477	12A2p6	cell line	sgMsh2	180606477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	74	0	0	NA	exonic	Col9a3	synonymous SNV	"Col9a3:NM_001378777:exon13:c.T621C:p.G207G,Col9a3:NM_009936:exon13:c.T621C:p.G207G"	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	2	1	1	0.9979409	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr2	180911048	12A2p6	cell line	sgMsh2	180911048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	112	0	0	NA	exonic	Ythdf1	nonsynonymous SNV	Ythdf1:NM_173761:exon4:c.A1292G:p.K431R	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9997537	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	181233173	12A2p6	cell line	sgMsh2	181233173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	76	0	0	NA	exonic	Helz2	nonsynonymous SNV	Helz2:NM_183162:exon9:c.A5527G:p.T1843A	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.9981584	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	181597313	12A2p6	cell line	sgMsh2	181597313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	128	0	0	NA	exonic	Samd10	nonsynonymous SNV	"Samd10:NM_001370751:exon3:c.T337C:p.Y113H,Samd10:NM_172676:exon3:c.T304C:p.Y102H"	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9941896	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr2	181670370	12A2p6	cell line	sgMsh2	181670370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	80	0	0	NA	exonic	Sox18	nonsynonymous SNV	Sox18:NM_009236:exon2:c.T967C:p.Y323H	2qH4	chr2-97628777-181807525	5	3	2	0.9	4.205340083	NA	1	1	1	0.998527	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	223	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	10340799	12A2p6	cell line	sgMsh2	10340799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	86	0	0	NA	exonic	Zfand1	nonsynonymous SNV	"Zfand1:NM_001331014:exon8:c.T674C:p.V225A,Zfand1:NM_001331015:exon8:c.T422C:p.V141A,Zfand1:NM_025512:exon8:c.T743C:p.V248A"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.831722816	1	0.9161192	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	14539921	12A2p6	cell line	sgMsh2	14539921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	190	0	0	NA	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon6:c.A716G:p.D239G,Lrrcc1:NM_001163580:exon6:c.A716G:p.D239G,Lrrcc1:NM_028915:exon6:c.A716G:p.D239G"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999969	GAT	nonsynonymous	ATG	9	ATGATGATG	NA
M7_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	73	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9975783	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	18103736	12A2p6	cell line	sgMsh2	18103736	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	113	0	0	NA	exonic	Cyp7b1	nonsynonymous SNV	Cyp7b1:NM_007825:exon2:c.G218T:p.R73M	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9977221	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	20266459	12A2p6	cell line	sgMsh2	20266459	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	241	0	0	NA	exonic	Cpb1	nonsynonymous SNV	Cpb1:NM_029706:exon4:c.G331A:p.G111R	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	23846609	12A2p6	cell line	sgMsh2	23846609	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	109	0	0	NA	exonic	Naaladl2	nonsynonymous SNV	Naaladl2:NM_001326288:exon13:c.T2056C:p.F686L	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	25436635	12A2p6	cell line	sgMsh2	25436635	A	-	Deletion	Mutect2;Vardict	2	0.18	51	0	0	NA	exonic	Nlgn1	frameshift deletion	"Nlgn1:NM_001163387:exon5:c.840delT:p.Q281Nfs*3,Nlgn1:NM_001357096:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357097:exon5:c.867delT:p.Q290Nfs*3,Nlgn1:NM_001357095:exon6:c.927delT:p.Q310Nfs*3,Nlgn1:NM_138666:exon7:c.927delT:p.Q310Nfs*3"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.841068017	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr3	27239540	12A2p6	cell line	sgMsh2	27239540	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	164	0	0	NA	exonic	Nceh1	nonsynonymous SNV	Nceh1:NM_178772:exon4:c.T446G:p.L149R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999866	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	28625210	12A2p6	cell line	sgMsh2	28625210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	281	0	0	NA	exonic	Tnik	synonymous SNV	Tnik:NM_026910:exon21:c.A2394G:p.K798K	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	2.04E-08	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	345	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	7.54E-09	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	30679349	12A2p6	cell line	sgMsh2	30679349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	69	0	0	NA	exonic	Lrrc31	synonymous SNV	Lrrc31:NM_001309233:exon9:c.A1215G:p.L405L	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.841068017	1	0.9256219	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	30907437	12A2p6	cell line	sgMsh2	30907437	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	115	0	0	NA	exonic	Phc3	nonsynonymous SNV	"Phc3:NM_001165955:exon14:c.C2746A:p.L916M,Phc3:NM_001165954:exon15:c.C2881A:p.L961M,Phc3:NM_153421:exon15:c.C2845A:p.L949M,Phc3:NM_001165956:exon16:c.C2755A:p.L919M"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997917	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	31118554	12A2p6	cell line	sgMsh2	31118554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	74	0	0	NA	exonic	Skil	nonsynonymous SNV	"Skil:NM_001039090:exon7:c.A1831G:p.M611V,Skil:NM_011386:exon7:c.A1969G:p.M657V,Skil:NM_001271772:exon9:c.A1591G:p.M531V"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	GAT	nonsynonymous	GAT	9	GATGATGAT	NA
M7_p20	chr3	32451880	12A2p6	cell line	sgMsh2	32451880	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	153	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon14:c.A2140G:p.N714D	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.280356006	3	0.9999989	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	34651199	12A2p6	cell line	sgMsh2	34651199	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.444	11	0	0	NA	exonic	Sox2	nonsynonymous SNV	Sox2:NM_011443:exon1:c.C784A:p.H262N	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9343634	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	36644253	12A2p6	cell line	sgMsh2	36644253	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	127	0	0	NA	exonic	Trpc3	nonsynonymous SNV	Trpc3:NM_019510:exon7:c.T1856C:p.L619P	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.289701206	3	0.9999691	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	36973333	12A2p6	cell line	sgMsh2	36973333	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	147	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon43:c.A6865G:p.R2289G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999652	AAG	nonsynonymous	AAGG	9	AAGGAAGGA	NA
M7_p20	chr3	37085038	12A2p6	cell line	sgMsh2	37085038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	145	0	0	NA	exonic	Adad1	nonsynonymous SNV	Adad1:NM_009350:exon9:c.T1256G:p.V419G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999611	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	37085145	12A2p6	cell line	sgMsh2	37085145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	51	0	0	NA	exonic	Adad1	nonsynonymous SNV	Adad1:NM_009350:exon9:c.A1363G:p.S455G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9925877	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	37320357	12A2p6	cell line	sgMsh2	37320357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	259	0	0	NA	exonic	Bbs12	nonsynonymous SNV	"Bbs12:NM_001008502:exon2:c.T1298C:p.V433A,Bbs12:NM_001255992:exon2:c.T953C:p.V318A"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	38454137	12A2p6	cell line	sgMsh2	38454137	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	44	0	0	NA	exonic	Ankrd50	frameshift deletion	Ankrd50:NM_001373894:exon4:c.4191delC:p.S1398Rfs*4	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7_p20	chr3	38454366	12A2p6	cell line	sgMsh2	38454366	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	131	0	0	NA	exonic	Ankrd50	nonsynonymous SNV	Ankrd50:NM_001373894:exon4:c.C3962T:p.T1321M	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999149	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	38979852	12A2p6	cell line	sgMsh2	38979852	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	148	0	0	NA	exonic	Fat4	nonsynonymous SNV	Fat4:NM_183221:exon9:c.C7652T:p.T2551I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.873776217	1	0.9896433	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	45381123	12A2p6	cell line	sgMsh2	45381123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	30	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098171:exon1:c.A1871G:p.N624S,Pcdh10:NM_001098172:exon1:c.A1871G:p.N624S,Pcdh10:NM_011043:exon1:c.A1871G:p.N624S"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9720563	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	45381524	12A2p6	cell line	sgMsh2	45381524	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	70	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098171:exon1:c.C2272A:p.L758I,Pcdh10:NM_001098172:exon1:c.C2272A:p.L758I,Pcdh10:NM_011043:exon1:c.C2272A:p.L758I"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.997426	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	45381753	12A2p6	cell line	sgMsh2	45381753	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	112	0	0	NA	exonic	Pcdh10	frameshift deletion	"Pcdh10:NM_001098170:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098171:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_001098172:exon1:c.2501delT:p.L834Rfs*3,Pcdh10:NM_011043:exon1:c.2501delT:p.L834Rfs*3"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTG	frameshift	GACC	8	GACCGACC	-1
M7_p20	chr3	45392730	12A2p6	cell line	sgMsh2	45392730	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	39	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098171:exon4:c.T2959C:p.F987L,Pcdh10:NM_001098172:exon4:c.T2959C:p.F987L"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.98559	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	46446427	12A2p6	cell line	sgMsh2	46446427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	187	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.T781C:p.F261L	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999963	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr3	46447011	12A2p6	cell line	sgMsh2	46447011	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	245	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.A197C:p.K66T	3qB	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	49744983	12A2p6	cell line	sgMsh2	49744983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	101	0	0	NA	exonic	Pcdh18	nonsynonymous SNV	Pcdh18:NM_130448:exon4:c.T3029C:p.V1010A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	51493496	12A2p6	cell line	sgMsh2	51493496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	183	0	0	NA	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.G390A:p.E130E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999954	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr3	51493550	12A2p6	cell line	sgMsh2	51493550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	252	0	0	NA	exonic	Rab33b	synonymous SNV	Rab33b:NM_016858:exon2:c.T444C:p.N148N	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATA	synonymous	AAAT	8	AAATAAAT	NA
M7_p20	chr3	52345836	12A2p6	cell line	sgMsh2	52345836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	110	0	0	NA	exonic	Foxo1	synonymous SNV	Foxo1:NM_019739:exon2:c.T1419C:p.I473I	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997245	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	54318065	12A2p6	cell line	sgMsh2	54318065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	245	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_016984:exon11:c.A2834G:p.K945R,Trpc4:NM_001253682:exon12:c.A2582G:p.K861R"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	54794474	12A2p6	cell line	sgMsh2	54794474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	161	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon5:c.A1135G:p.M379V	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999841	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	55783246	12A2p6	cell line	sgMsh2	55783246	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	144	0	0	NA	exonic	Mab21l1	nonsynonymous SNV	Mab21l1:NM_010750:exon1:c.G253A:p.V85M	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	GGT	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	322	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	2.96E-09	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	61	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr3	59217615	12A2p6	cell line	sgMsh2	59217615	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	0	0	NA	exonic	P2ry12	nonsynonymous SNV	"P2ry12:NM_001357007:exon3:c.T638C:p.V213A,P2ry12:NM_001357010:exon4:c.T638C:p.V213A,P2ry12:NM_027571:exon4:c.T638C:p.V213A,P2ry12:NM_001357008:exon5:c.T638C:p.V213A"	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999751	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	59319866	12A2p6	cell line	sgMsh2	59319866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	204	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon7:c.A6385G:p.T2129A	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999986	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	59319877	12A2p6	cell line	sgMsh2	59319877	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	189	0	0	NA	exonic	Igsf10	frameshift deletion	Igsf10:NM_001162884:exon7:c.6374delA:p.K2125Rfs*49	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr3	59331736	12A2p6	cell line	sgMsh2	59331736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	205	0	0	NA	exonic	Igsf10	synonymous SNV	Igsf10:NM_001162884:exon5:c.A1023G:p.L341L	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999986	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	60039863	12A2p6	cell line	sgMsh2	60039863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	315	0	0	NA	exonic	Aadac	nonsynonymous SNV	Aadac:NM_023383:exon5:c.A981G:p.I327M	3qD	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	3.89E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	62340037	12A2p6	cell line	sgMsh2	62340037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	13	0	0	NA	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.T541C:p.S181P	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9410259	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	62340491	12A2p6	cell line	sgMsh2	62340491	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	121	0	0	NA	exonic	Arhgef26	nonsynonymous SNV	Arhgef26:NM_001081295:exon1:c.A995T:p.K332M	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9728217	AAG	nonsynonymous	AAG	11	AAGAAGAAGAA	NA
M7_p20	chr3	63697910	12A2p6	cell line	sgMsh2	63697910	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	190	0	0	NA	exonic	Plch1	synonymous SNV	"Plch1:NM_183191:exon23:c.A4572G:p.S1524S,Plch1:NM_001370984:exon24:c.A4548G:p.S1516S"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999969	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr3	64104991	12A2p6	cell line	sgMsh2	64104991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	426	0	0	NA	exonic	Vmn2r1	nonsynonymous SNV	"Vmn2r1:NM_019918:exon6:c.T2272C:p.F758L,Vmn2r1:NM_001384924:exon7:c.T2047C:p.F683L"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	64503772	12A2p6	cell line	sgMsh2	64503772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	1125	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon2:c.T1113C:p.H371H,Vmn2r5:NM_001385126:exon3:c.T1374C:p.H458H"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr3	66157922	12A2p6	cell line	sgMsh2	66157922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	114	0	0	NA	exonic	Veph1	nonsynonymous SNV	Veph1:NM_145820:exon9:c.T1723C:p.C575R	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9996386	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	67485187	12A2p6	cell line	sgMsh2	67485187	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.119	67	0	0	NA	exonic	Rarres1	synonymous SNV	Rarres1:NM_001164763:exon4:c.C591T:p.T197T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.556039411	2	0.9658613	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr3	68916152	12A2p6	cell line	sgMsh2	68916152	-	A	Insertion	Mutect2;Vardict	2	0.168	138	0	0	NA	exonic	Ift80	frameshift insertion	Ift80:NM_026641:exon16:c.1775dupT:p.H593Pfs*1	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.784996816	NA	NA	GGA	frameshift	NA	NA	NA	1
M7_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	132	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999195	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	68950427	12A2p6	cell line	sgMsh2	68950427	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon9:c.T884A:p.F295Y	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.999995	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	69575824	12A2p6	cell line	sgMsh2	69575824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	121	0	0	NA	exonic	B3galnt1	nonsynonymous SNV	B3galnt1:NM_020026:exon3:c.T103C:p.Y35H	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9959139	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	262	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	72909013	12A2p6	cell line	sgMsh2	72909013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	130	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon40:c.G4619A:p.G1540E	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.99991	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	72918581	12A2p6	cell line	sgMsh2	72918581	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	160	0	0	NA	exonic	Sis	stopgain	Sis:NM_001081137:exon33:c.C3919T:p.Q1307X	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	72943513	12A2p6	cell line	sgMsh2	72943513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	128	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon16:c.G1851T:p.M617I	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	73049547	12A2p6	cell line	sgMsh2	73049547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	101	0	0	NA	exonic	Slitrk3	nonsynonymous SNV	"Slitrk3:NM_001357851:exon2:c.T1891C:p.Y631H,Slitrk3:NM_198864:exon2:c.T1891C:p.Y631H"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	79481028	12A2p6	cell line	sgMsh2	79481028	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.12	47	0	0	NA	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon13:c.T2305C:p.C769R	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.560712011	2	0.840888	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	79512558	12A2p6	cell line	sgMsh2	79512558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	328	0	0	NA	exonic	Fnip2	nonsynonymous SNV	Fnip2:NM_001162999:exon4:c.T410C:p.M137T	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	2.40E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	79886907	12A2p6	cell line	sgMsh2	79886907	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	80	0	0	NA	exonic	Gask1b	synonymous SNV	Gask1b:NM_133187:exon1:c.T681C:p.A227A	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.998527	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr3	81141464	12A2p6	cell line	sgMsh2	81141464	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.07	135	0	0	NA	exonic	Pdgfc	nonsynonymous SNV	Pdgfc:NM_019971:exon2:c.A178G:p.S60G	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.327082006	3	0.9996354	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	81969552	12A2p6	cell line	sgMsh2	81969552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	154	0	0	NA	exonic	Tdo2	synonymous SNV	Tdo2:NM_019911:exon5:c.G369A:p.K123K	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999765	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr3	82359114	12A2p6	cell line	sgMsh2	82359114	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	171	0	0	NA	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon2:c.C65A:p.T22N,Map9:NM_001356457:exon2:c.C65A:p.T22N"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9992302	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	85993971	12A2p6	cell line	sgMsh2	85993971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	113	0	0	NA	exonic	Prss48	nonsynonymous SNV	Prss48:NM_001001650:exon6:c.A788G:p.N263S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997671	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	86107262	12A2p6	cell line	sgMsh2	86107262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	119	0	0	NA	exonic	Sh3d19	synonymous SNV	"Sh3d19:NM_001082414:exon14:c.A2010G:p.E670E,Sh3d19:NM_001374679:exon15:c.A2010G:p.E670E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9927861	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr3	86395233	12A2p6	cell line	sgMsh2	86395233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	186	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon35:c.T5599C:p.S1867P,Lrba:NM_001077688:exon35:c.T5599C:p.S1867P,Lrba:NM_030695:exon35:c.T5599C:p.S1867P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999961	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	86751608	12A2p6	cell line	sgMsh2	86751608	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	88	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077688:exon52:c.T7781A:p.I2594N,Lrba:NM_030695:exon52:c.T7781A:p.I2594N"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.850413217	1	0.9481474	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	87389666	12A2p6	cell line	sgMsh2	87389666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	277	0	0	NA	exonic	Fcrl1	synonymous SNV	"Fcrl1:NM_001136236:exon7:c.A792G:p.A264A,Fcrl1:NM_001310545:exon8:c.A921G:p.A307A,Fcrl1:NM_178165:exon8:c.A921G:p.A307A,Fcrl1:NM_153090:exon9:c.A981G:p.A327A"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	2.52E-08	CAG	synonymous	CAG	9	CAGCAGCAG	NA
M7_p20	chr3	87756153	12A2p6	cell line	sgMsh2	87756153	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	20	0	0	NA	exonic	Pear1	nonsynonymous SNV	"Pear1:NM_001032414:exon10:c.C1237T:p.L413F,Pear1:NM_001289600:exon10:c.C1000T:p.L334F,Pear1:NM_001032413:exon11:c.C1237T:p.L413F,Pear1:NM_001289601:exon12:c.C481T:p.L161F,Pear1:NM_028460:exon12:c.C1237T:p.L413F,Pear1:NM_152799:exon12:c.C1237T:p.L413F"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9594315	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	88159205	12A2p6	cell line	sgMsh2	88159205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	97	0	0	NA	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310587:exon5:c.T480C:p.S160S,Mef2d:NM_001310593:exon5:c.T477C:p.S159S,Mef2d:NM_133665:exon5:c.T480C:p.S160S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	88168116	12A2p6	cell line	sgMsh2	88168116	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	69	0	0	NA	exonic	Mef2d	synonymous SNV	"Mef2d:NM_001310593:exon10:c.A1281G:p.P427P,Mef2d:NM_133665:exon10:c.A1284G:p.P428P,Mef2d:NM_001310587:exon11:c.A1305G:p.P435P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9838957	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr3	88245865	12A2p6	cell line	sgMsh2	88245865	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	195	0	0	NA	exonic	Rhbg	nonsynonymous SNV	Rhbg:NM_021375:exon5:c.A781C:p.S261R	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999475	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	88359028	12A2p6	cell line	sgMsh2	88359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	180	0	0	NA	exonic	Smg5	nonsynonymous SNV	Smg5:NM_178246:exon18:c.T2507C:p.L836P	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9990125	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	89735373	12A2p6	cell line	sgMsh2	89735373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	82	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001146296:exon2:c.T560C:p.L187P,Adar:NM_001357958:exon2:c.T677C:p.L226P,Adar:NM_019655:exon2:c.T560C:p.L187P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	89871177	12A2p6	cell line	sgMsh2	89871177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	49	0	0	NA	exonic	Il6ra	nonsynonymous SNV	"Il6ra:NM_001310676:exon10:c.A1364G:p.Y455C,Il6ra:NM_010559:exon10:c.A1367G:p.Y456C"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9917177	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	89947846	12A2p6	cell line	sgMsh2	89947846	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	79	0	0	NA	exonic	Atp8b2	synonymous SNV	"Atp8b2:NM_001368650:exon16:c.T1773C:p.P591P,Atp8b2:NM_001081182:exon17:c.T1716C:p.P572P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9880151	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr3	90000921	12A2p6	cell line	sgMsh2	90000921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	86	0	0	NA	exonic	Ubap2l	nonsynonymous SNV	"Ubap2l:NM_001357307:exon27:c.A3272G:p.N1091S,Ubap2l:NM_001165983:exon28:c.A3314G:p.N1105S,Ubap2l:NM_001165984:exon28:c.A3299G:p.N1100S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.7816371	GTT	nonsynonymous	AGCTGT	12	AGCTGTAGCTGT	NA
M7_p20	chr3	90175918	12A2p6	cell line	sgMsh2	90175918	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	322	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon23:c.T3176C:p.I1059T	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999998	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	90232503	12A2p6	cell line	sgMsh2	90232503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	235	0	0	NA	exonic	Jtb	nonsynonymous SNV	Jtb:NM_206924:exon3:c.T196C:p.F66L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	90458078	12A2p6	cell line	sgMsh2	90458078	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	57	0	0	NA	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon13:c.T2074G:p.F692V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.822377616	1	0.8918592	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	90464933	12A2p6	cell line	sgMsh2	90464933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	39	0	0	NA	exonic	Npr1	nonsynonymous SNV	Npr1:NM_008727:exon1:c.C571T:p.P191S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9856008	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	92031460	12A2p6	cell line	sgMsh2	92031460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	117	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon7:c.C941T:p.T314I	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998137	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	92433547	12A2p6	cell line	sgMsh2	92433547	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	165	0	0	NA	exonic	Sprr2k	nonsynonymous SNV	Sprr2k:NM_011477:exon2:c.A203G:p.K68R	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9999469	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	93214656	12A2p6	cell line	sgMsh2	93214656	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	257	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon6:c.G4132T:p.G1378W	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	93443526	12A2p6	cell line	sgMsh2	93443526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	137	0	0	NA	exonic	Tchh	nonsynonymous SNV	Tchh:NM_001163098:exon2:c.A272G:p.Q91R	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999391	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	94486600	12A2p6	cell line	sgMsh2	94486600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	67	0	0	NA	exonic	Celf3	nonsynonymous SNV	"Celf3:NM_001379256:exon5:c.C335T:p.A112V,Celf3:NM_001289613:exon6:c.C563T:p.A188V,Celf3:NM_001357784:exon6:c.C563T:p.A188V,Celf3:NM_172434:exon6:c.C560T:p.A187V,Celf3:NM_001289616:exon7:c.C332T:p.A111V,Celf3:NM_001289620:exon7:c.C332T:p.A111V,Celf3:NM_001357785:exon7:c.C335T:p.A112V,Celf3:NM_001357786:exon7:c.C335T:p.A112V,Celf3:NM_001379249:exon7:c.C563T:p.A188V,Celf3:NM_001379250:exon7:c.C560T:p.A187V,Celf3:NM_001379251:exon7:c.C332T:p.A111V,Celf3:NM_001379252:exon7:c.C335T:p.A112V,Celf3:NM_001379253:exon7:c.C335T:p.A112V,Celf3:NM_001379254:exon7:c.C332T:p.A111V,Celf3:NM_001379255:exon7:c.C335T:p.A112V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9969573	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	223	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.836395417	1	0.9631325	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	95140536	12A2p6	cell line	sgMsh2	95140536	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	92	0	0	NA	exonic	Tnfaip8l2	nonsynonymous SNV	Tnfaip8l2:NM_027206:exon2:c.C15G:p.S5R	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9658757	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	95263687	12A2p6	cell line	sgMsh2	95263687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	114	0	0	NA	exonic	Prune1	nonsynonymous SNV	Prune1:NM_173347:exon4:c.T425C:p.V142A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997797	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	95324761	12A2p6	cell line	sgMsh2	95324761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	150	0	0	NA	exonic	Setdb1	nonsynonymous SNV	"Setdb1:NM_001163641:exon20:c.A3589G:p.T1197A,Setdb1:NM_001163642:exon20:c.A3586G:p.T1196A,Setdb1:NM_018877:exon20:c.A3589G:p.T1197A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999706	GTT	nonsynonymous	GTTG	8	GTTGGTTG	NA
M7_p20	chr3	95355990	12A2p6	cell line	sgMsh2	95355990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	185	0	0	NA	exonic	Setdb1	synonymous SNV	"Setdb1:NM_001163641:exon2:c.A204G:p.V68V,Setdb1:NM_001163642:exon2:c.A204G:p.V68V,Setdb1:NM_018877:exon2:c.A204G:p.V68V"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9991375	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	95679660	12A2p6	cell line	sgMsh2	95679660	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	62	0	0	NA	exonic	Adamtsl4	synonymous SNV	"Adamtsl4:NM_001301705:exon14:c.G2379A:p.P793P,Adamtsl4:NM_144899:exon14:c.G2379A:p.P793P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9959796	GCG	synonymous	GGC	8	GGCGGCGG	NA
M7_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	95	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993628	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	96188350	12A2p6	cell line	sgMsh2	96188350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	114	0	0	NA	exonic	Sv2a	synonymous SNV	Sv2a:NM_022030:exon5:c.T981C:p.A327A	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997797	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr3	96440748	12A2p6	cell line	sgMsh2	96440748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	97	0	0	NA	exonic	BC107364	nonsynonymous SNV	"BC107364:NM_001256180:exon3:c.A224G:p.N75S,BC107364:NM_001256181:exon3:c.A224G:p.N75S"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9973485	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	97210381	12A2p6	cell line	sgMsh2	97210381	-	G	Insertion	Strelka2;Vardict	2	0.2	45	0	0	NA	exonic	Bcl9	frameshift insertion	Bcl9:NM_029933:exon8:c.995dupC:p.P333Tfs*7	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.934520019	NA	NA	GTG	frameshift	G	5	GGGGG	1
M7_p20	chr3	99939331	12A2p6	cell line	sgMsh2	99939331	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.246	182	0	0	NA	exonic	Spag17	nonsynonymous SNV	Spag17:NM_028892:exon2:c.G170A:p.R57Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999951	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	100161037	12A2p6	cell line	sgMsh2	100161037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	249	0	0	NA	exonic	Wdr3	nonsynonymous SNV	Wdr3:NM_175552:exon2:c.T154A:p.L52I	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	101012155	12A2p6	cell line	sgMsh2	101012155	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	164	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon6:c.C1642G:p.P548A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999865	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	101056312	12A2p6	cell line	sgMsh2	101056312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	85	0	0	NA	exonic	Ptgfrn	synonymous SNV	Ptgfrn:NM_011197:exon6:c.T1983C:p.S661S	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9938299	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr3	102520427	12A2p6	cell line	sgMsh2	102520427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	96	0	0	NA	exonic	Ngf	nonsynonymous SNV	"Ngf:NM_001112698:exon3:c.A305C:p.D102A,Ngf:NM_013609:exon4:c.A503C:p.D168A"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993975	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	102758173	12A2p6	cell line	sgMsh2	102758173	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	380	0	0	NA	exonic	Tspan2	nonsynonymous SNV	"Tspan2:NM_001243132:exon4:c.T275C:p.L92S,Tspan2:NM_027533:exon4:c.T287C:p.L96S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1.08E-09	TTG	nonsynonymous	CTGT	8	CTGTCTGT	NA
M7_p20	chr3	103056908	12A2p6	cell line	sgMsh2	103056908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	292	0	0	NA	exonic	Csde1	nonsynonymous SNV	"Csde1:NM_001310693:exon18:c.T1982C:p.I661T,Csde1:NM_001161854:exon19:c.T2279C:p.I760T,Csde1:NM_144901:exon20:c.T2372C:p.I791T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9986218	ATC	nonsynonymous	AGAA	11	AGAAAGAAAGA	NA
M7_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	122	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	103764542	12A2p6	cell line	sgMsh2	103764542	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	39	0	0	NA	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon4:c.T1240C:p.Y414H,Hipk1:NM_001301306:exon4:c.T1240C:p.Y414H,Hipk1:NM_010432:exon4:c.T1240C:p.Y414H"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8658257	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	103981932	12A2p6	cell line	sgMsh2	103981932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	218	0	0	NA	exonic	Phtf1	nonsynonymous SNV	"Phtf1:NM_001163467:exon4:c.T149C:p.L50S,Phtf1:NM_001163468:exon4:c.T149C:p.L50S,Phtf1:NM_001163469:exon4:c.T149C:p.L50S,Phtf1:NM_013629:exon4:c.T149C:p.L50S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	TTG	nonsynonymous	TTGA	9	TTGATTGAT	NA
M7_p20	chr3	104054483	12A2p6	cell line	sgMsh2	104054483	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	52	0	0	NA	exonic	Magi3	nonsynonymous SNV	"Magi3:NM_001159354:exon9:c.G1228A:p.V410I,Magi3:NM_133853:exon9:c.G1228A:p.V410I"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.9863136	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	123	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	105716778	12A2p6	cell line	sgMsh2	105716778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	57	0	0	NA	exonic	Inka2	nonsynonymous SNV	"Inka2:NM_001163356:exon2:c.A410G:p.Q137R,Inka2:NM_175398:exon2:c.A467G:p.Q156R"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.836395417	1	0.9134357	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	105951690	12A2p6	cell line	sgMsh2	105951690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	132	0	0	NA	exonic	Atp5pb	synonymous SNV	"Atp5pb:NM_009725:exon5:c.A414G:p.V138V,Atp5pb:NM_001304719:exon6:c.A339G:p.V113V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999195	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	106128164	12A2p6	cell line	sgMsh2	106128164	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	304	0	0	NA	exonic	Chia1	synonymous SNV	Chia1:NM_023186:exon6:c.T495G:p.A165A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.593420212	2	6.18E-09	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr3	106164811	12A2p6	cell line	sgMsh2	106164811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	527	0	0	NA	exonic	Chil3	nonsynonymous SNV	Chil3:NM_009892:exon2:c.T47C:p.V16A	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.49529561	2	1.54E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	106822035	12A2p6	cell line	sgMsh2	106822035	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	204	0	0	NA	exonic	Olfr266	nonsynonymous SNV	Olfr266:NM_146489:exon1:c.A523C:p.N175H	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999986	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	107942356	12A2p6	cell line	sgMsh2	107942356	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	289	0	0	NA	exonic	Gstm6	nonsynonymous SNV	"Gstm6:NM_001379508:exon3:c.A134G:p.Y45C,Gstm6:NM_001379505:exon4:c.A278G:p.Y93C,Gstm6:NM_001379506:exon4:c.A236G:p.Y79C,Gstm6:NM_008184:exon4:c.A236G:p.Y79C,Gstm6:NM_001379507:exon5:c.A230G:p.Y77C,Gstm6:NM_001379504:exon6:c.A341G:p.Y114C"	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1.34E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	108464426	12A2p6	cell line	sgMsh2	108464426	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.284	50	0	0	NA	exonic	Elapor1	frameshift deletion	"Elapor1:NM_001033304:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001358065:exon15:c.1825delA:p.M609Wfs*37,Elapor1:NM_001346518:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358063:exon16:c.2131delA:p.M711Wfs*37,Elapor1:NM_001358064:exon16:c.2131delA:p.M711Wfs*37"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr3	108663623	12A2p6	cell line	sgMsh2	108663623	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	155	0	0	NA	exonic	Clcc1	nonsynonymous SNV	"Clcc1:NM_001177770:exon4:c.C346A:p.L116I,Clcc1:NM_001355632:exon4:c.C331A:p.L111I,Clcc1:NM_145543:exon4:c.C331A:p.L111I,Clcc1:NM_001177771:exon5:c.C331A:p.L111I"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999778	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	108883558	12A2p6	cell line	sgMsh2	108883558	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	313	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon3:c.A151G:p.T51A,Fndc7:NM_177091:exon3:c.A151G:p.T51A"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	4.23E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	109628125	12A2p6	cell line	sgMsh2	109628125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	184	0	0	NA	exonic	Vav3	synonymous SNV	"Vav3:NM_146139:exon3:c.T192G:p.T64T,Vav3:NM_001378987:exon20:c.T1872G:p.T624T,Vav3:NM_020505:exon20:c.T1872G:p.T624T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999956	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr3	114124209	12A2p6	cell line	sgMsh2	114124209	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	145	0	0	NA	exonic	Col11a1	nonsynonymous SNV	Col11a1:NM_007729:exon27:c.C2270T:p.P757L	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999611	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	116124476	12A2p6	cell line	sgMsh2	116124476	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	165	0	0	NA	exonic	Vcam1	nonsynonymous SNV	Vcam1:NM_011693:exon4:c.A835T:p.I279F	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999873	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	116543792	12A2p6	cell line	sgMsh2	116543792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	128	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon7:c.T421C:p.F141L,Dbt:NM_010022:exon8:c.T964C:p.F322L"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.728925614	2	0.8174168	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	116605233	12A2p6	cell line	sgMsh2	116605233	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	69	0	0	NA	exonic	Sass6	frameshift deletion	"Sass6:NM_001289571:exon2:c.58delT:p.L22Cfs*13,Sass6:NM_028349:exon3:c.163delT:p.L57Cfs*13"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr3	116895535	12A2p6	cell line	sgMsh2	116895535	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	201	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.T1054C:p.Y352H,Frrs1:NM_009146:exon10:c.T1054C:p.Y352H"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999983	ATA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr3	119761719	12A2p6	cell line	sgMsh2	119761719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	197	0	0	NA	exonic	Ptbp2	synonymous SNV	"Ptbp2:NM_001310711:exon3:c.T99C:p.S33S,Ptbp2:NM_019550:exon3:c.T99C:p.S33S"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.999995	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr3	121729520	12A2p6	cell line	sgMsh2	121729520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	34	0	0	NA	exonic	F3	synonymous SNV	F3:NM_010171:exon3:c.T378C:p.F126F	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9810433	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr3	121765035	12A2p6	cell line	sgMsh2	121765035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	210	0	0	NA	exonic	Abcd3	nonsynonymous SNV	"Abcd3:NM_001355756:exon21:c.A1592G:p.D531G,Abcd3:NM_008991:exon21:c.A1811G:p.D604G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.999999	ATC	nonsynonymous	TCCACA	12	TCCACATCCACA	NA
M7_p20	chr3	122148996	12A2p6	cell line	sgMsh2	122148996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	168	0	0	NA	exonic	Abca4	nonsynonymous SNV	Abca4:NM_007378:exon36:c.T5137C:p.F1713L	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.929847418	1	0.9995925	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	123112816	12A2p6	cell line	sgMsh2	123112816	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	211	0	0	NA	exonic	Synpo2	synonymous SNV	Synpo2:NM_080451:exon4:c.A2850G:p.K950K	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.999999	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr3	125438107	12A2p6	cell line	sgMsh2	125438107	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	203	0	0	NA	exonic	Ndst4	nonsynonymous SNV	Ndst4:NM_022565:exon2:c.G324T:p.M108I	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999985	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	126943351	12A2p6	cell line	sgMsh2	126943351	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	164	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001327939:exon37:c.C8622T:p.S2874S,Ank2:NM_001327938:exon39:c.C8868T:p.S2956S"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999865	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr3	126981840	12A2p6	cell line	sgMsh2	126981840	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	188	0	0	NA	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_178655:exon4:c.A139C:p.N47H,Ank2:NM_001327938:exon24:c.A2641C:p.N881H,Ank2:NM_001327939:exon24:c.A2491C:p.N831H"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999965	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	127815622	12A2p6	cell line	sgMsh2	127815622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	77	0	0	NA	exonic	Ap1ar	nonsynonymous SNV	Ap1ar:NM_145964:exon6:c.G349A:p.A117T	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9982584	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	129281642	12A2p6	cell line	sgMsh2	129281642	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	225	0	0	NA	exonic	Enpep	nonsynonymous SNV	Enpep:NM_007934:exon14:c.T2026C:p.S676P	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.929847418	1	0.9999423	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	129331941	12A2p6	cell line	sgMsh2	129331941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	58	0	0	NA	exonic	Enpep	nonsynonymous SNV	Enpep:NM_007934:exon1:c.A541G:p.T181A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	129809029	12A2p6	cell line	sgMsh2	129809029	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	101	0	0	NA	exonic	Rrh	nonsynonymous SNV	Rrh:NM_009102:exon7:c.T917C:p.L306S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	129999552	12A2p6	cell line	sgMsh2	129999552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	80	0	0	NA	exonic	Sec24b	synonymous SNV	Sec24b:NM_207209:exon11:c.T2035C:p.L679L	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.998527	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr3	130033850	12A2p6	cell line	sgMsh2	130033850	-	G	Insertion	Strelka2;Vardict	2	0.2358	106	0	0	NA	exonic	Sec24b	frameshift insertion	Sec24b:NM_207209:exon3:c.998dupC:p.E334Rfs*5	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTG	frameshift	G	8	GGGGGGGG	1
M7_p20	chr3	132886004	12A2p6	cell line	sgMsh2	132886004	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	66	0	0	NA	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon11:c.T1354C:p.Y452H,Npnt:NM_001287103:exon11:c.T1042C:p.Y348H,Npnt:NM_001287102:exon12:c.T1447C:p.Y483H,Npnt:NM_033525:exon12:c.T1405C:p.Y469H,Npnt:NM_001287101:exon13:c.T1498C:p.Y500H"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.565384611	2	0.00097189	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	133485665	12A2p6	cell line	sgMsh2	133485665	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	172	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.A3007G:p.T1003A,Tet2:NM_001346736:exon3:c.A3007G:p.T1003A"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	133486751	12A2p6	cell line	sgMsh2	133486751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	254	0	0	NA	exonic	Tet2	nonsynonymous SNV	"Tet2:NM_001040400:exon3:c.T1921C:p.Y641H,Tet2:NM_001346736:exon3:c.T1921C:p.Y641H"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	134829477	12A2p6	cell line	sgMsh2	134829477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	100	0	0	NA	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.T205C:p.S69P	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9868829	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	134829585	12A2p6	cell line	sgMsh2	134829585	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	209	0	0	NA	exonic	Tacr3	nonsynonymous SNV	Tacr3:NM_021382:exon1:c.A313G:p.T105A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.303719006	3	0.9999999	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	135326185	12A2p6	cell line	sgMsh2	135326185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	61	0	0	NA	exonic	Slc9b2	nonsynonymous SNV	Slc9b2:NM_178877:exon7:c.A805G:p.T269A	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9957493	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	138223970	12A2p6	cell line	sgMsh2	138223970	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	140	0	0	NA	exonic	Adh7	nonsynonymous SNV	Adh7:NM_009626:exon5:c.C406A:p.P136T	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999485	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	138224083	12A2p6	cell line	sgMsh2	138224083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	50	0	0	NA	exonic	Adh7	synonymous SNV	Adh7:NM_009626:exon5:c.C519T:p.G173G	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr3	138228811	12A2p6	cell line	sgMsh2	138228811	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	168	0	0	NA	exonic	Adh7	nonsynonymous SNV	Adh7:NM_009626:exon8:c.G994T:p.V332L	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	138282520	12A2p6	cell line	sgMsh2	138282520	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	293	0	0	NA	exonic	Adh1	nonsynonymous SNV	Adh1:NM_007409:exon4:c.G344A:p.S115N	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1.09E-08	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	138480720	12A2p6	cell line	sgMsh2	138480720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	461	0	0	NA	exonic	Metap1	nonsynonymous SNV	Metap1:NM_175224:exon3:c.T247C:p.Y83H	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	141465774	12A2p6	cell line	sgMsh2	141465774	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	109	0	0	NA	exonic	Unc5c	stopgain	"Unc5c:NM_001293561:exon1:c.C61T:p.Q21X,Unc5c:NM_009472:exon1:c.C61T:p.Q21X"	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.7444736	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	144952971	12A2p6	cell line	sgMsh2	144952971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	72	0	0	NA	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon14:c.T2482C:p.F828L	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9976978	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	144963643	12A2p6	cell line	sgMsh2	144963643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	246	0	0	NA	exonic	Clca4a	synonymous SNV	Clca4a:NM_207208:exon7:c.T1146C:p.N382N	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr3	145889211	12A2p6	cell line	sgMsh2	145889211	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	80	0	0	NA	exonic	Ddah1	nonsynonymous SNV	Ddah1:NM_026993:exon5:c.A725G:p.Y242C	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.998527	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	145930477	12A2p6	cell line	sgMsh2	145930477	A	-	Deletion	Strelka2;Vardict	2	0.2222	63	0	0	NA	exonic	Bcl10	frameshift deletion	Bcl10:NM_009740:exon2:c.129delA:p.I46Yfs*1	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M7_p20	chr3	145930531	12A2p6	cell line	sgMsh2	145930531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	exonic	Bcl10	nonsynonymous SNV	Bcl10:NM_009740:exon2:c.T183A:p.S61R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9839713	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	146240695	12A2p6	cell line	sgMsh2	146240695	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	150	0	0	NA	exonic	Lpar3	nonsynonymous SNV	Lpar3:NM_022983:exon2:c.T127C:p.F43L	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.331754607	3	0.9997988	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	146487367	12A2p6	cell line	sgMsh2	146487367	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	176	0	0	NA	exonic	Spata1	nonsynonymous SNV	"Spata1:NM_001316756:exon6:c.T368C:p.V123A,Spata1:NM_001370604:exon6:c.T368C:p.V123A,Spata1:NM_027617:exon6:c.T368C:p.V123A"	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.387825808	3	0.9811603	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	146597208	12A2p6	cell line	sgMsh2	146597208	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	328	0	0	NA	exonic	Uox	frameshift deletion	Uox:NM_009474:exon1:c.5delC:p.H3Ifs*46	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7_p20	chr3	146650711	12A2p6	cell line	sgMsh2	146650711	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.342	113	0	0	NA	exonic	4930503B20Rik	frameshift deletion	4930503B20Rik:NM_029144:exon1:c.441delC:p.I148Sfs*27	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M7_p20	chr3	148837574	12A2p6	cell line	sgMsh2	148837574	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	116	0	0	NA	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon13:c.G2513T:p.R838M	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	148859015	12A2p6	cell line	sgMsh2	148859015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	281	0	0	NA	exonic	Adgrl2	nonsynonymous SNV	Adgrl2:NM_001081298:exon5:c.T928C:p.Y310H	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	2.04E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	152102697	12A2p6	cell line	sgMsh2	152102697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	221	0	0	NA	exonic	Gipc2	nonsynonymous SNV	Gipc2:NM_016867:exon5:c.T718C:p.S240P	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.998837	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	152226131	12A2p6	cell line	sgMsh2	152226131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	88	0	0	NA	exonic	Fubp1	nonsynonymous SNV	"Fubp1:NM_001355369:exon17:c.A1616G:p.H539R,Fubp1:NM_001355370:exon17:c.A1613G:p.H538R,Fubp1:NM_001355371:exon17:c.A1616G:p.H539R,Fubp1:NM_001355372:exon17:c.A1616G:p.H539R,Fubp1:NM_001355373:exon17:c.A1616G:p.H539R,Fubp1:NM_001355374:exon17:c.A1613G:p.H538R,Fubp1:NM_057172:exon17:c.A1613G:p.H538R,Fubp1:NM_001355366:exon18:c.A1679G:p.H560R,Fubp1:NM_001355367:exon18:c.A1676G:p.H559R,Fubp1:NM_001355368:exon18:c.A1679G:p.H560R"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9977098	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	152278905	12A2p6	cell line	sgMsh2	152278905	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	75	0	0	NA	exonic	Miga1	nonsynonymous SNV	"Miga1:NM_001162375:exon13:c.T1380G:p.C460W,Miga1:NM_174868:exon15:c.T1572G:p.C524W"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9980527	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	152785494	12A2p6	cell line	sgMsh2	152785494	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	157	0	0	NA	exonic	Pigk	synonymous SNV	"Pigk:NM_025662:exon11:c.T1170C:p.H390H,Pigk:NM_178016:exon12:c.T1311C:p.H437H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999801	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr3	154622253	12A2p6	cell line	sgMsh2	154622253	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	48	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon9:c.T991G:p.L331V,Cryz:NM_001357673:exon9:c.T991G:p.L331V,Cryz:NM_001357674:exon9:c.T991G:p.L331V,Cryz:NM_001357675:exon9:c.T991G:p.L331V,Cryz:NM_001357676:exon9:c.T991G:p.L331V,Cryz:NM_009968:exon9:c.T991G:p.L331V"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	2	1	1	0.9912455	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	154748360	12A2p6	cell line	sgMsh2	154748360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	166	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1171C:p.Y391H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.668181813	2	0.9965339	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	155086812	12A2p6	cell line	sgMsh2	155086812	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	213	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.G1577A:p.S526N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999991	ACT	nonsynonymous	ACTC	9	ACTCACTCA	NA
M7_p20	chr3	155187768	12A2p6	cell line	sgMsh2	155187768	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	121	0	0	NA	exonic	Lrriq3	frameshift deletion	Lrriq3:NM_028938:exon7:c.1105delG:p.A370Qfs*2	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
M7_p20	chr3	157146312	12A2p6	cell line	sgMsh2	157146312	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	0	0	NA	exonic	Negr1	synonymous SNV	"Negr1:NM_001039094:exon5:c.G750A:p.E250E,Negr1:NM_177274:exon5:c.G750A:p.E250E"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8722657	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr3	157546722	12A2p6	cell line	sgMsh2	157546722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	84	0	0	NA	exonic	Zranb2	nonsynonymous SNV	"Zranb2:NM_001355381:exon9:c.G770A:p.S257N,Zranb2:NM_017381:exon10:c.G977A:p.S326N"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	AGT	nonsynonymous	GTTCAA	12	GTTCAAGTTCAA	NA
M7_p20	chr3	158026779	12A2p6	cell line	sgMsh2	158026779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	239	0	0	NA	exonic	Srsf11	synonymous SNV	"Srsf11:NM_001093753:exon2:c.C262T:p.L88L,Srsf11:NM_001379533:exon2:c.C262T:p.L88L,Srsf11:NM_001093752:exon3:c.C367T:p.L123L,Srsf11:NM_001379531:exon3:c.C367T:p.L123L,Srsf11:NM_001379532:exon3:c.C367T:p.L123L"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr3	158054594	12A2p6	cell line	sgMsh2	158054594	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	324	0	0	NA	exonic	Lrrc40	synonymous SNV	"Lrrc40:NM_001289525:exon6:c.T337C:p.L113L,Lrrc40:NM_001359763:exon7:c.T622C:p.L208L,Lrrc40:NM_001289524:exon8:c.T337C:p.L113L,Lrrc40:NM_024194:exon8:c.T991C:p.L331L"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	2.75E-09	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr3	158179828	12A2p6	cell line	sgMsh2	158179828	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	171	0	0	NA	exonic	Lrrc7	nonsynonymous SNV	"Lrrc7:NM_001370781:exon15:c.C1357T:p.P453S,Lrrc7:NM_001370782:exon15:c.C1357T:p.P453S,Lrrc7:NM_001081358:exon16:c.C1258T:p.P420S,Lrrc7:NM_001291452:exon16:c.C1258T:p.P420S,Lrrc7:NM_001291453:exon16:c.C1258T:p.P420S"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999909	GGG	nonsynonymous	TGGG	8	TGGGTGGG	NA
M7_p20	chr3	159498430	12A2p6	cell line	sgMsh2	159498430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	67	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon2:c.A115G:p.K39E,Depdc1a:NM_001172093:exon2:c.A115G:p.K39E,Depdc1a:NM_029523:exon2:c.A115G:p.K39E"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr3	159515518	12A2p6	cell line	sgMsh2	159515518	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	181	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A485T:p.K162M,Depdc1a:NM_001172093:exon4:c.A485T:p.K162M,Depdc1a:NM_029523:exon4:c.A485T:p.K162M"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999948	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr3	159515569	12A2p6	cell line	sgMsh2	159515569	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	192	0	0	NA	exonic	Depdc1a	nonsynonymous SNV	"Depdc1a:NM_001172092:exon4:c.A536C:p.N179T,Depdc1a:NM_001172093:exon4:c.A536C:p.N179T,Depdc1a:NM_029523:exon4:c.A536C:p.N179T"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	4076581	12A2p6	cell line	sgMsh2	4076581	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	208	0	0	NA	exonic	Sdr16c6	nonsynonymous SNV	Sdr16c6:NM_001080710:exon2:c.A317C:p.D106A	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9931702	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	6273820	12A2p6	cell line	sgMsh2	6273820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	198	0	0	NA	exonic	Cyp7a1	nonsynonymous SNV	Cyp7a1:NM_007824:exon2:c.G85A:p.V29I	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.999998	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	8801426	12A2p6	cell line	sgMsh2	8801426	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	37	0	0	NA	exonic	Chd7	synonymous SNV	Chd7:NM_001277149:exon4:c.G2169A:p.P723P	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9839242	CGT	synonymous	C	5	CCCCC	NA
M7_p20	chr4	8833809	12A2p6	cell line	sgMsh2	8833809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	117	0	0	NA	exonic	Chd7	nonsynonymous SNV	Chd7:NM_001277149:exon15:c.T3562A:p.L1188M	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998137	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	8844694	12A2p6	cell line	sgMsh2	8844694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	68	0	0	NA	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon20:c.A1100G:p.K367R,Chd7:NM_001277149:exon21:c.A4802G:p.K1601R"	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9971223	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	11165096	12A2p6	cell line	sgMsh2	11165096	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	213	0	0	NA	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.G119A:p.C40Y,Trp53inp1:NM_021897:exon3:c.G119A:p.C40Y"	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999991	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	11165105	12A2p6	cell line	sgMsh2	11165105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	220	0	0	NA	exonic	Trp53inp1	nonsynonymous SNV	"Trp53inp1:NM_001199105:exon3:c.T128G:p.F43C,Trp53inp1:NM_021897:exon3:c.T128G:p.F43C"	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	11713593	12A2p6	cell line	sgMsh2	11713593	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	77	0	0	NA	exonic	Gem	nonsynonymous SNV	Gem:NM_010276:exon5:c.A728G:p.D243G	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.980319	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	12146151	12A2p6	cell line	sgMsh2	12146151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	84	0	0	NA	exonic	Rbm12b1	nonsynonymous SNV	Rbm12b1:NM_028226:exon3:c.T2122C:p.F708L	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.9978405	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	12164156	12A2p6	cell line	sgMsh2	12164156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	200	0	0	NA	exonic	Cibar1	nonsynonymous SNV	"Cibar1:NM_001310743:exon5:c.A670G:p.T224A,Cibar1:NM_026558:exon5:c.A682G:p.T228A"	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999982	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	12164194	12A2p6	cell line	sgMsh2	12164194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	129	0	0	NA	exonic;splicing	Cibar1;Cibar1	nonsynonymous SNV	Cibar1:NM_026558:exon5:c.A644G:p.Q215R	4qA1	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	CTG	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr4	15991206	12A2p6	cell line	sgMsh2	15991206	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	397	0	0	NA	exonic	Nbn	nonsynonymous SNV	Nbn:NM_013752:exon15:c.G2203A:p.E735K	4qA2	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	1.03E-09	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	18051833	12A2p6	cell line	sgMsh2	18051833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	370	0	0	NA	exonic	Mmp16	nonsynonymous SNV	"Mmp16:NM_019724:exon5:c.A821G:p.D274G,Mmp16:NM_001379518:exon6:c.A821G:p.D274G,Mmp16:NM_001379519:exon6:c.A821G:p.D274G"	4qA3	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	1.13E-09	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	108	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	2	1	1	0.9996919	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	21678296	12A2p6	cell line	sgMsh2	21678296	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.172	33	0	0	NA	exonic	Prdm13	synonymous SNV	Prdm13:NM_001080771:exon4:c.T2193C:p.S731S	4qA3	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8690098	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	21732295	12A2p6	cell line	sgMsh2	21732295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	222	0	0	NA	exonic	Ccnc	nonsynonymous SNV	"Ccnc:NM_001122982:exon3:c.T217C:p.Y73H,Ccnc:NM_001290420:exon3:c.T217C:p.Y73H,Ccnc:NM_001290422:exon3:c.T217C:p.Y73H,Ccnc:NM_016746:exon3:c.T217C:p.Y73H"	4qA3	chr4-3184901-21908931	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	25008109	12A2p6	cell line	sgMsh2	25008109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	64	0	0	NA	exonic	Gpr63	nonsynonymous SNV	"Gpr63:NM_001379626:exon2:c.A832G:p.N278D,Gpr63:NM_001379627:exon2:c.A832G:p.N278D,Gpr63:NM_030733:exon2:c.A832G:p.N278D"	4qA3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9964035	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	25207152	12A2p6	cell line	sgMsh2	25207152	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	93	0	0	NA	exonic	Fhl5	synonymous SNV	"Fhl5:NM_001355498:exon5:c.T615C:p.D205D,Fhl5:NM_021318:exon5:c.T615C:p.D205D,Fhl5:NM_001379528:exon6:c.T615C:p.D205D"	4qA3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992875	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr4	25250638	12A2p6	cell line	sgMsh2	25250638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	86	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon19:c.A2214G:p.L738L,Ufl1:NM_026194:exon19:c.A2214G:p.L738L"	4qA3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9989464	CTA	synonymous	TGAC	9	TGACTGACT	NA
M7_p20	chr4	31979762	12A2p6	cell line	sgMsh2	31979762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	87	0	0	NA	exonic	Map3k7	nonsynonymous SNV	"Map3k7:NM_009316:exon5:c.T370C:p.Y124H,Map3k7:NM_172688:exon5:c.T370C:p.Y124H"	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9990037	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	32644256	12A2p6	cell line	sgMsh2	32644256	A	-	Deletion	Strelka2;Vardict	2	0.4143	70	0	0	NA	exonic	Casp8ap2	frameshift deletion	"Casp8ap2:NM_001122978:exon8:c.3328delA:p.K1112Nfs*5,Casp8ap2:NM_011997:exon8:c.3328delA:p.K1112Nfs*5"	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M7_p20	chr4	32722967	12A2p6	cell line	sgMsh2	32722967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	114	0	0	NA	exonic	Mdn1	synonymous SNV	Mdn1:NM_001081392:exon48:c.A7281G:p.T2427T	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997797	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	33944549	12A2p6	cell line	sgMsh2	33944549	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	168	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T936G:p.R312R,Cnr1:NM_001365881:exon2:c.T936G:p.R312R,Cnr1:NM_007726:exon2:c.T936G:p.R312R,Cnr1:NM_001355021:exon6:c.T936G:p.R312R"	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999892	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	138	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999424	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	34826847	12A2p6	cell line	sgMsh2	34826847	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	56	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon5:c.T581C:p.I194T	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9943856	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	35709180	12A2p6	cell line	sgMsh2	35709180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	150	0	0	NA	exonic	Lingo2	nonsynonymous SNV	"Lingo2:NM_001166001:exon2:c.C799T:p.L267F,Lingo2:NM_175516:exon3:c.C799T:p.L267F,Lingo2:NM_001165999:exon8:c.C799T:p.L267F,Lingo2:NM_001166000:exon9:c.C799T:p.L267F"	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999706	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	39451164	12A2p6	cell line	sgMsh2	39451164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	126	0	0	NA	exonic	1700009N14Rik	synonymous SNV	1700009N14Rik:NM_001081095:exon2:c.A369G:p.K123K	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998874	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	40163770	12A2p6	cell line	sgMsh2	40163770	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	124	0	0	NA	exonic	Aco1	nonsynonymous SNV	Aco1:NM_007386:exon2:c.C22T:p.L8F	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998741	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	40177796	12A2p6	cell line	sgMsh2	40177796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	104	0	0	NA	exonic	Aco1	synonymous SNV	Aco1:NM_007386:exon8:c.A816G:p.G272G	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996147	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	41023681	12A2p6	cell line	sgMsh2	41023681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	78	0	0	NA	exonic	Nfx1	nonsynonymous SNV	Nfx1:NM_023739:exon22:c.A3089C:p.D1030A	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9983529	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	41116066	12A2p6	cell line	sgMsh2	41116066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	62	0	0	NA	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon24:c.C3025T:p.P1009S	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9959796	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	41121239	12A2p6	cell line	sgMsh2	41121239	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	0	0	NA	exonic	Nol6	nonsynonymous SNV	Nol6:NM_139236:exon7:c.T1016C:p.V339A	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9969573	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	41499423	12A2p6	cell line	sgMsh2	41499423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	50	0	0	NA	exonic	Myorg	nonsynonymous SNV	Myorg:NM_001085515:exon2:c.C206T:p.A69V	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9921647	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	43646587	12A2p6	cell line	sgMsh2	43646587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	169	0	0	NA	exonic	Npr2	nonsynonymous SNV	"Npr2:NM_001355466:exon12:c.T1859C:p.L620P,Npr2:NM_173788:exon13:c.T1934C:p.L645P"	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999898	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	43654396	12A2p6	cell line	sgMsh2	43654396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	115	0	0	NA	exonic	Hint2	nonsynonymous SNV	Hint2:NM_026871:exon5:c.A416G:p.K139R	4qA5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997917	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	44994084	12A2p6	cell line	sgMsh2	44994084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	48	0	0	NA	exonic	Zbtb5	synonymous SNV	"Zbtb5:NM_001163283:exon2:c.T1299C:p.C433C,Zbtb5:NM_001163284:exon2:c.T1299C:p.C433C,Zbtb5:NM_173399:exon2:c.T1299C:p.C433C"	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9912455	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	45043792	12A2p6	cell line	sgMsh2	45043792	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	44	0	0	NA	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378819:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378820:exon8:c.G1469A:p.G490D,Fbxo10:NM_001378821:exon8:c.G2030A:p.G677D,Fbxo10:NM_001378822:exon8:c.G2090A:p.G697D,Fbxo10:NM_001378823:exon8:c.G1469A:p.G490D"	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9890748	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	45399331	12A2p6	cell line	sgMsh2	45399331	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	304	0	0	NA	exonic	Slc25a51	synonymous SNV	Slc25a51:NM_001009949:exon3:c.C807A:p.L269L	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	6.35E-09	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr4	45399489	12A2p6	cell line	sgMsh2	45399489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	106	0	0	NA	exonic	Slc25a51	nonsynonymous SNV	Slc25a51:NM_001009949:exon3:c.A649G:p.I217V	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996555	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	45444765	12A2p6	cell line	sgMsh2	45444765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	58	0	0	NA	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon5:c.T1242C:p.A414A	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9949767	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	45458236	12A2p6	cell line	sgMsh2	45458236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.583	37	0	0	NA	exonic	Shb	synonymous SNV	Shb:NM_001033306:exon3:c.T927C:p.T309T	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9839242	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	46020900	12A2p6	cell line	sgMsh2	46020900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	42	0	0	NA	exonic	Tdrd7	synonymous SNV	"Tdrd7:NM_001290475:exon13:c.A2325G:p.P775P,Tdrd7:NM_001355189:exon13:c.A2226G:p.P742P,Tdrd7:NM_146142:exon13:c.A2226G:p.P742P"	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9877977	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	46629947	12A2p6	cell line	sgMsh2	46629947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	62	0	0	NA	exonic	Tbc1d2	nonsynonymous SNV	Tbc1d2:NM_198664:exon4:c.T719C:p.V240A	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9959796	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	46684312	12A2p6	cell line	sgMsh2	46684312	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	40	0	0	NA	exonic	Gabbr2	nonsynonymous SNV	Gabbr2:NM_001081141:exon14:c.T1961C:p.I654T	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9863733	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	47279934	12A2p6	cell line	sgMsh2	47279934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	24	0	0	NA	exonic	Col15a1	nonsynonymous SNV	Col15a1:NM_009928:exon16:c.A2158G:p.T720A	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9673015	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	49792572	12A2p6	cell line	sgMsh2	49792572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	185	0	0	NA	exonic	Grin3a	nonsynonymous SNV	"Grin3a:NM_001033351:exon2:c.A1160G:p.Y387C,Grin3a:NM_001276355:exon2:c.A1160G:p.Y387C"	4qB1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999958	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	52449331	12A2p6	cell line	sgMsh2	52449331	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.364	14	0	0	NA	exonic	Smc2	nonsynonymous SNV	"Smc2:NM_001301412:exon6:c.T491C:p.M164T,Smc2:NM_008017:exon6:c.T491C:p.M164T"	4qB2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9440888	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	52467902	12A2p6	cell line	sgMsh2	52467902	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	114	0	0	NA	exonic	Smc2	frameshift deletion	"Smc2:NM_001301412:exon17:c.2245delA:p.T751Pfs*8,Smc2:NM_008017:exon17:c.2245delA:p.T751Pfs*8"	4qB2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr4	52995837	12A2p6	cell line	sgMsh2	52995837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	85	0	0	NA	exonic	Nipsnap3a	nonsynonymous SNV	Nipsnap3a:NM_028529:exon3:c.C284T:p.A95V	4qB2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9988859	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997917	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	57076378	12A2p6	cell line	sgMsh2	57076378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	101	0	0	NA	exonic	Epb41l4b	nonsynonymous SNV	"Epb41l4b:NM_001355492:exon11:c.A1082G:p.H361R,Epb41l4b:NM_019427:exon11:c.A1082G:p.H361R"	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995444	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	57103523	12A2p6	cell line	sgMsh2	57103523	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	52	0	0	NA	exonic	Epb41l4b	synonymous SNV	"Epb41l4b:NM_001355492:exon2:c.T312C:p.H104H,Epb41l4b:NM_019427:exon2:c.T312C:p.H104H"	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.992988	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr4	58053269	12A2p6	cell line	sgMsh2	58053269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	104	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon43:c.A10075G:p.I3359V	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996147	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	58088241	12A2p6	cell line	sgMsh2	58088241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	121	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon31:c.A5207G:p.N1736S	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998511	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	58100861	12A2p6	cell line	sgMsh2	58100861	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	35	0	0	NA	exonic	Svep1	nonsynonymous SNV	Svep1:NM_022814:exon23:c.A3800T:p.E1267V	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9820559	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	59737654	12A2p6	cell line	sgMsh2	59737654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	172	0	0	NA	exonic	E130308A19Rik	nonsynonymous SNV	E130308A19Rik:NM_001015681:exon3:c.A1264G:p.K422E	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999914	CAA	nonsynonymous	CAC	8	CACCACCA	NA
M7_p20	chr4	59959255	12A2p6	cell line	sgMsh2	59959255	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	242	0	0	NA	exonic	Mup4	nonsynonymous SNV	Mup4:NM_008648:exon3:c.G239T:p.C80F	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999998	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	63319081	12A2p6	cell line	sgMsh2	63319081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	19	0	0	NA	exonic	Col27a1	nonsynonymous SNV	Col27a1:NM_025685:exon47:c.T4247C:p.V1416A	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9571948	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	63356984	12A2p6	cell line	sgMsh2	63356984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	182	0	0	NA	exonic	Orm3	nonsynonymous SNV	Orm3:NM_001379520:exon3:c.G331A:p.E111K	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999951	TGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	108	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996919	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	68762239	12A2p6	cell line	sgMsh2	68762239	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	106	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T2053G:p.F685V	4qC1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996555	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	68762562	12A2p6	cell line	sgMsh2	68762562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	166	0	0	NA	exonic	Brinp1	nonsynonymous SNV	Brinp1:NM_019967:exon8:c.T1730C:p.M577T	4qC1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999988	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	70433397	12A2p6	cell line	sgMsh2	70433397	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	91	0	0	NA	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1486C:p.S496P	4qC2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992032	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	70433405	12A2p6	cell line	sgMsh2	70433405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	81	0	0	NA	exonic	Megf9	nonsynonymous SNV	Megf9:NM_172694:exon6:c.T1478C:p.V493A	4qC2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.998607	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	72124894	12A2p6	cell line	sgMsh2	72124894	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	134	0	0	NA	exonic	Tle1	nonsynonymous SNV	"Tle1:NM_001285530:exon14:c.G1485T:p.E495D,Tle1:NM_001285529:exon16:c.G1704T:p.E568D,Tle1:NM_011599:exon16:c.G1707T:p.E569D"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999928	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	72124965	12A2p6	cell line	sgMsh2	72124965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	187	0	0	NA	exonic	Tle1	nonsynonymous SNV	"Tle1:NM_001285530:exon14:c.A1414G:p.I472V,Tle1:NM_001285529:exon16:c.A1633G:p.I545V,Tle1:NM_011599:exon16:c.A1636G:p.I546V"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999963	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	73919858	12A2p6	cell line	sgMsh2	73919858	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	156	0	0	NA	exonic	Gm11756	synonymous SNV	Gm11756:NM_001126326:exon2:c.C90A:p.S30S	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.845740617	1	0.9659945	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr4	74307008	12A2p6	cell line	sgMsh2	74307008	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	38	0	0	NA	exonic	Kdm4c	nonsynonymous SNV	"Kdm4c:NM_001356561:exon5:c.G448A:p.A150T,Kdm4c:NM_001172095:exon6:c.G724A:p.A242T,Kdm4c:NM_144787:exon6:c.G673A:p.A225T"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9847852	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	75957140	12A2p6	cell line	sgMsh2	75957140	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	175	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001368992:exon23:c.3664delA:p.I1222fs*0,Ptprd:NM_001352629:exon24:c.3676delA:p.I1226fs*0,Ptprd:NM_001352630:exon24:c.3673delA:p.I1225fs*0,Ptprd:NM_001368993:exon24:c.3703delA:p.I1235fs*0,Ptprd:NM_001352628:exon25:c.3715delA:p.I1239fs*0,Ptprd:NM_001368991:exon34:c.3688delA:p.I1230fs*0,Ptprd:NM_011211:exon34:c.3691delA:p.I1231fs*0"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	ATT	nonsynonymous	NA	NA	NA	-1
M7_p20	chr4	76136913	12A2p6	cell line	sgMsh2	76136913	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	54	0	0	NA	exonic	Ptprd	stopgain	"Ptprd:NM_001352628:exon7:c.C580T:p.Q194X,Ptprd:NM_001352629:exon7:c.C580T:p.Q194X,Ptprd:NM_001352630:exon7:c.C580T:p.Q194X,Ptprd:NM_001368992:exon7:c.C580T:p.Q194X,Ptprd:NM_001368993:exon7:c.C580T:p.Q194X,Ptprd:NM_001368991:exon17:c.C598T:p.Q200X,Ptprd:NM_011211:exon17:c.C598T:p.Q200X"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9937253	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	83681465	12A2p6	cell line	sgMsh2	83681465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	73	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon16:c.T743C:p.M248T,Ccdc171:NM_001355378:exon17:c.T2540C:p.M847T"	4qC3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9978227	ATG	nonsynonymous	AGGCAT	12	AGGCATAGGCAT	NA
M7_p20	chr4	84275845	12A2p6	cell line	sgMsh2	84275845	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	147	0	0	NA	exonic	Bnc2	nonsynonymous SNV	"Bnc2:NM_001369082:exon6:c.A3062C:p.N1021T,Bnc2:NM_172870:exon6:c.A3041C:p.N1014T,Bnc2:NM_001369081:exon7:c.A3263C:p.N1088T,Bnc2:NM_001369083:exon7:c.A3242C:p.N1081T,Bnc2:NM_001369084:exon7:c.A3008C:p.N1003T"	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999652	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	85067548	12A2p6	cell line	sgMsh2	85067548	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	95	0	0	NA	exonic	Cntln	synonymous SNV	Cntln:NM_175275:exon17:c.C2835T:p.S945S	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9993628	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr4	86277137	12A2p6	cell line	sgMsh2	86277137	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	81	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_029967:exon13:c.A1790G:p.E597G,Adamtsl1:NM_001368621:exon14:c.A1841G:p.E614G"	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.439224409	2	0.8341365	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	86575940	12A2p6	cell line	sgMsh2	86575940	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.361	45	0	0	NA	exonic	Rraga	frameshift deletion	Rraga:NM_178376:exon1:c.22delA:p.K9Rfs*3	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr4	88414292	12A2p6	cell line	sgMsh2	88414292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	47	0	0	NA	exonic	Hacd4	nonsynonymous SNV	"Hacd4:NM_001377100:exon6:c.T524G:p.V175G,Hacd4:NM_001377098:exon7:c.T671G:p.V224G,Hacd4:NM_001377099:exon7:c.T671G:p.V224G,Hacd4:NM_025760:exon7:c.T671G:p.V224G"	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9907467	AAC	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr4	88880163	12A2p6	cell line	sgMsh2	88880163	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	190	0	0	NA	exonic	Ifne	nonsynonymous SNV	Ifne:NM_177348:exon1:c.T17C:p.L6P	4qC4	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999969	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	90224531	12A2p6	cell line	sgMsh2	90224531	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	175	0	0	NA	exonic	Zfp352	nonsynonymous SNV	Zfp352:NM_153102:exon2:c.T907A:p.C303S	4qC5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999927	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	95050417	12A2p6	cell line	sgMsh2	95050417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	49	0	0	NA	exonic	Jun	synonymous SNV	Jun:NM_010591:exon1:c.A855G:p.E285E	4qC5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9917177	TTT	synonymous	T	5	TTTTT	NA
M7_p20	chr4	96307431	12A2p6	cell line	sgMsh2	96307431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	184	0	0	NA	exonic	Cyp2j11	nonsynonymous SNV	Cyp2j11:NM_001004141:exon7:c.A1027G:p.I343V	4qC5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999956	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	96584125	12A2p6	cell line	sgMsh2	96584125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	182	0	0	NA	exonic	Cyp2j9	synonymous SNV	Cyp2j9:NM_028979:exon3:c.A375G:p.G125G	4qC5	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999951	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr4	98357954	12A2p6	cell line	sgMsh2	98357954	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	144	0	0	NA	exonic	Tm2d1	nonsynonymous SNV	Tm2d1:NM_053157:exon6:c.A610G:p.T204A	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999588	GTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr4	98931511	12A2p6	cell line	sgMsh2	98931511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	143	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon5:c.A1047G:p.T349T,Usp1:NM_001301414:exon6:c.A1209G:p.T403T,Usp1:NM_146144:exon6:c.A1209G:p.T403T"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999565	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	98973478	12A2p6	cell line	sgMsh2	98973478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	43	0	0	NA	exonic	Dock7	nonsynonymous SNV	"Dock7:NM_001369285:exon31:c.T3911C:p.V1304A,Dock7:NM_026082:exon31:c.T3911C:p.V1304A,Dock7:NM_001290636:exon32:c.T4001C:p.V1334A,Dock7:NM_001369286:exon32:c.T4001C:p.V1334A"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9884537	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	99221382	12A2p6	cell line	sgMsh2	99221382	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	97	0	0	NA	exonic	Atg4c	synonymous SNV	"Atg4c:NM_001145967:exon5:c.T585G:p.A195A,Atg4c:NM_175029:exon5:c.T585G:p.A195A"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994302	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr4	100441210	12A2p6	cell line	sgMsh2	100441210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	171	0	0	NA	exonic	Ror1	synonymous SNV	Ror1:NM_013845:exon9:c.A1779G:p.L593L	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999909	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	101002990	12A2p6	cell line	sgMsh2	101002990	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	100	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon27:c.G3757T:p.A1253S	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995182	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	101137712	12A2p6	cell line	sgMsh2	101137712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	94	0	0	NA	exonic	Raver2	nonsynonymous SNV	Raver2:NM_183024:exon10:c.T1631C:p.V544A	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9993262	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	101599194	12A2p6	cell line	sgMsh2	101599194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	199	0	0	NA	exonic	Dnajc6	nonsynonymous SNV	"Dnajc6:NM_001164583:exon4:c.T488C:p.V163A,Dnajc6:NM_001164584:exon4:c.T398C:p.V133A,Dnajc6:NM_001355179:exon4:c.T407C:p.V136A,Dnajc6:NM_001164585:exon5:c.T284C:p.V95A,Dnajc6:NM_001355180:exon5:c.T284C:p.V95A,Dnajc6:NM_198412:exon5:c.T284C:p.V95A"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9999981	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	101618548	12A2p6	cell line	sgMsh2	101618548	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	22	0	0	NA	exonic	Dnajc6	synonymous SNV	"Dnajc6:NM_001164583:exon12:c.G1617A:p.K539K,Dnajc6:NM_001164584:exon12:c.G1527A:p.K509K,Dnajc6:NM_001355179:exon12:c.G1536A:p.K512K,Dnajc6:NM_001164585:exon13:c.G1413A:p.K471K,Dnajc6:NM_001355180:exon13:c.G1413A:p.K471K,Dnajc6:NM_198412:exon13:c.G1413A:p.K471K"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9635712	AGC	synonymous	AGC	8	AGCAGCAG	NA
M7_p20	chr4	102605137	12A2p6	cell line	sgMsh2	102605137	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	67	0	0	NA	exonic	Pde4b	nonsynonymous SNV	"Pde4b:NM_001177980:exon10:c.A1493T:p.D498V,Pde4b:NM_001177981:exon10:c.A1310T:p.D437V,Pde4b:NM_001177982:exon10:c.A1253T:p.D418V,Pde4b:NM_001374780:exon15:c.A1778T:p.D593V,Pde4b:NM_019840:exon15:c.A1964T:p.D655V"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9969573	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	103139430	12A2p6	cell line	sgMsh2	103139435	GAGGAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.353	74	0	0	NA	exonic	Mier1	nonframeshift deletion	"Mier1:NM_001039081:exon4:c.253_258del:p.E92_E93del,Mier1:NM_001286223:exon4:c.250_255del:p.E91_E92del,Mier1:NM_001286221:exon6:c.388_393del:p.E137_E138del,Mier1:NM_001286222:exon6:c.304_309del:p.E109_E110del,Mier1:NM_027696:exon6:c.304_309del:p.E109_E110del"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	AGA	inframe	GAG	32	GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGA	-6
M7_p20	chr4	104800418	12A2p6	cell line	sgMsh2	104800418	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	61	0	0	NA	exonic	C8b	synonymous SNV	"C8b:NM_001316671:exon9:c.A1281G:p.E427E,C8b:NM_133882:exon10:c.A1479G:p.E493E"	4qC6	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9957493	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	106359040	12A2p6	cell line	sgMsh2	106359040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	44	0	0	NA	exonic	Usp24	synonymous SNV	Usp24:NM_183225:exon10:c.T1084C:p.L362L	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9890748	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr4	106370984	12A2p6	cell line	sgMsh2	106370984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	105	0	0	NA	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon20:c.A2242G:p.M748V	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996357	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	106636819	12A2p6	cell line	sgMsh2	106636819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	27	0	0	NA	exonic	Ttc22	synonymous SNV	Ttc22:NM_177667:exon5:c.T975C:p.L325L	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9722123	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr4	108642133	12A2p6	cell line	sgMsh2	108642133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	89	0	0	NA	exonic	Zfyve9	synonymous SNV	"Zfyve9:NM_183300:exon17:c.T1914C:p.D638D,Zfyve9:NM_001347163:exon18:c.T3987C:p.D1329D,Zfyve9:NM_001384118:exon18:c.T3987C:p.D1329D"	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999109	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr4	109083130	12A2p6	cell line	sgMsh2	109083130	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	149	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon8:c.T567A:p.D189E,Osbpl9:NM_001355191:exon9:c.T363A:p.D121E,Osbpl9:NM_173350:exon9:c.T606A:p.D202E,Osbpl9:NM_001355190:exon10:c.T363A:p.D121E,Osbpl9:NM_133885:exon11:c.T858A:p.D286E,Osbpl9:NM_001346502:exon12:c.T927A:p.D309E,Osbpl9:NM_001368727:exon12:c.T897A:p.D299E"	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999689	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	109925893	12A2p6	cell line	sgMsh2	109925893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	154	0	0	NA	exonic	Faf1	synonymous SNV	Faf1:NM_007983:exon17:c.T1581C:p.A527A	4qC7	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999765	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	112125158	12A2p6	cell line	sgMsh2	112125158	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	200	0	0	NA	exonic	Skint4	nonsynonymous SNV	"Skint4:NM_001357339:exon6:c.T847A:p.S283T,Skint4:NM_178786:exon6:c.T847A:p.S283T,Skint4:NM_001347180:exon7:c.T823A:p.S275T"	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999982	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	112715782	12A2p6	cell line	sgMsh2	112715782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	50	0	0	NA	exonic	Skint10	synonymous SNV	Skint10:NM_177668:exon6:c.T816C:p.L272L	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9921647	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr4	113238336	12A2p6	cell line	sgMsh2	113238336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	203	0	0	NA	exonic	Skint6	nonsynonymous SNV	Skint6:NM_001103199:exon3:c.G125A:p.G42D	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999985	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	115016252	12A2p6	cell line	sgMsh2	115016252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	76	0	0	NA	exonic	Stil	synonymous SNV	"Stil:NM_001304551:exon9:c.T393G:p.V131V,Stil:NM_001304555:exon10:c.T1071G:p.V357V,Stil:NM_001304559:exon10:c.T1071G:p.V357V,Stil:NM_009185:exon10:c.T1071G:p.V357V"	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9981584	TTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	115326675	12A2p6	cell line	sgMsh2	115326675	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	335	0	0	NA	exonic	Cyp4a12a	frameshift deletion	Cyp4a12a:NM_177406:exon6:c.677delT:p.S228Pfs*36	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr4	115432495	12A2p6	cell line	sgMsh2	115432495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	262	0	0	NA	exonic	Cyp4a12b	synonymous SNV	Cyp4a12b:NM_172306:exon5:c.C558T:p.H186H	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999999	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr4	115628670	12A2p6	cell line	sgMsh2	115628670	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	33	0	0	NA	exonic	Cyp4b1	nonsynonymous SNV	Cyp4b1:NM_007823:exon8:c.T1069C:p.W357R	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9799748	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	116163736	12A2p6	cell line	sgMsh2	116163736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	249	0	0	NA	exonic	Tspan1	synonymous SNV	Tspan1:NM_133681:exon6:c.A483G:p.S161S	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999999	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr4	116510725	12A2p6	cell line	sgMsh2	116510725	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	95	0	0	NA	exonic	Ipp	nonsynonymous SNV	Ipp:NM_008389:exon2:c.C154T:p.R52W	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9993628	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	116704648	12A2p6	cell line	sgMsh2	116704648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	83	0	0	NA	exonic	Mmachc	synonymous SNV	Mmachc:NM_025962:exon3:c.A288G:p.E96E	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9987542	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr4	116817215	12A2p6	cell line	sgMsh2	116817215	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	69	0	0	NA	exonic	Mutyh	synonymous SNV	"Mutyh:NM_001316747:exon9:c.T699C:p.R233R,Mutyh:NM_133250:exon11:c.T882C:p.R294R,Mutyh:NM_001159581:exon12:c.T882C:p.R294R"	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9972784	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	117111583	12A2p6	cell line	sgMsh2	117111583	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	102	0	0	NA	exonic	Ptch2	synonymous SNV	"Ptch2:NM_001312903:exon19:c.T2079C:p.S693S,Ptch2:NM_008958:exon19:c.T3045C:p.S1015S"	4qD1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995691	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr4	117760430	12A2p6	cell line	sgMsh2	117760430	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	81	0	0	NA	exonic	Klf17	nonsynonymous SNV	Klf17:NM_029416:exon2:c.A729T:p.R243S	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.998607	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	118168566	12A2p6	cell line	sgMsh2	118168566	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	28	0	0	NA	exonic	Kdm4a	nonsynonymous SNV	"Kdm4a:NM_001161823:exon5:c.T442A:p.W148R,Kdm4a:NM_172382:exon5:c.T442A:p.W148R"	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9736839	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	118226522	12A2p6	cell line	sgMsh2	118226522	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	68	0	0	NA	exonic	Ptprf	nonsynonymous SNV	Ptprf:NM_011213:exon14:c.T2363C:p.V788A	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9971223	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	118366133	12A2p6	cell line	sgMsh2	118366133	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	99	0	0	NA	exonic	Szt2	synonymous SNV	Szt2:NM_198170:exon66:c.A9252C:p.G3084G	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994905	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	118709712	12A2p6	cell line	sgMsh2	118709712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	183	0	0	NA	exonic	Olfr1341	nonsynonymous SNV	Olfr1341:NM_146853:exon1:c.T304C:p.Y102H	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999954	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	118829749	12A2p6	cell line	sgMsh2	118829749	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.324	253	0	0	NA	exonic	Olfr1333	synonymous SNV	Olfr1333:NM_207157:exon1:c.G690A:p.K230K	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999999	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr4	118829751	12A2p6	cell line	sgMsh2	118829751	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.324	253	0	0	NA	exonic	Olfr1333	stopgain	Olfr1333:NM_207157:exon1:c.A688T:p.K230X	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	118916968	12A2p6	cell line	sgMsh2	118916968	A	G	SNV	Mutect2;MuSe;Vardict	3	0.061	451	0	0	NA	exonic	Olfr1329	synonymous SNV	Olfr1329:NM_001011870:exon1:c.T498C:p.S166S	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.285028606	3	1	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	120097174	12A2p6	cell line	sgMsh2	120097174	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.625	10	0	0	NA	exonic	Hivep3	nonsynonymous SNV	Hivep3:NM_010657:exon4:c.G2686T:p.A896S	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.930725	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	120162006	12A2p6	cell line	sgMsh2	120162006	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	exonic	Edn2	nonsynonymous SNV	Edn2:NM_007902:exon2:c.T191G:p.I64S	4qD2.1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9957493	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	120535475	12A2p6	cell line	sgMsh2	120535475	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	114	0	0	NA	exonic	Slfnl1	nonsynonymous SNV	Slfnl1:NM_177570:exon3:c.G966T:p.K322N	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9997797	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	121082857	12A2p6	cell line	sgMsh2	121082857	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	50	0	0	NA	exonic	Zmpste24	frameshift deletion	Zmpste24:NM_172700:exon5:c.591delT:p.F197Lfs*8	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr4	123117040	12A2p6	cell line	sgMsh2	123117040	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	218	0	0	NA	exonic	Oxct2b	nonsynonymous SNV	Oxct2b:NM_181859:exon1:c.T752C:p.V251A	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999993	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	123297957	12A2p6	cell line	sgMsh2	123297957	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	54	0	0	NA	exonic	Pabpc4	nonsynonymous SNV	"Pabpc4:NM_001356377:exon13:c.A1772G:p.H591R,Pabpc4:NM_148917:exon13:c.A1724G:p.H575R,Pabpc4:NM_130881:exon14:c.A1859G:p.H620R"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.855085817	1	9.47E-09	CAC	nonsynonymous	GCT	8	GCTGCTGC	NA
M7_p20	chr4	123376393	12A2p6	cell line	sgMsh2	123376393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	87	0	0	NA	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon78:c.T13883C:p.M4628T,Macf1:NM_001199136:exon83:c.T19964C:p.M6655T"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9990037	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	123408505	12A2p6	cell line	sgMsh2	123408505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	74	0	0	NA	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A2203G:p.T735A	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9979409	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	123409107	12A2p6	cell line	sgMsh2	123409107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	75	0	0	NA	exonic	D830031N03Rik	nonsynonymous SNV	D830031N03Rik:NM_001167918:exon1:c.A1601G:p.Y534C	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9980527	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	123432412	12A2p6	cell line	sgMsh2	123432412	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.085	104	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon52:c.A9216G:p.Q3072Q,Macf1:NM_001199136:exon57:c.A15297G:p.Q5099Q"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.397171008	3	0.7542313	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr4	123474499	12A2p6	cell line	sgMsh2	123474499	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	180	0	0	NA	exonic	Macf1	synonymous SNV	Macf1:NM_001199136:exon36:c.A6468G:p.K2156K	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999945	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr4	123474578	12A2p6	cell line	sgMsh2	123474578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	123	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A6389G:p.E2130G	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998668	TTC	nonsynonymous	CCTC	8	CCTCCCTC	NA
M7_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.934520019	1	0.9953566	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	124838723	12A2p6	cell line	sgMsh2	124838723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	74	0	0	NA	exonic	Mtf1	nonsynonymous SNV	Mtf1:NM_008636:exon9:c.A1573G:p.T525A	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9979409	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	125641560	12A2p6	cell line	sgMsh2	125641560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	107	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon5:c.T749C:p.M250T	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996742	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	125694046	12A2p6	cell line	sgMsh2	125694046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	exonic	Grik3	nonsynonymous SNV	Grik3:NM_001081097:exon13:c.A1958G:p.Y653C	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9998137	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M7_p20	chr4	126744854	12A2p6	cell line	sgMsh2	126744854	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.213	19	0	0	NA	exonic	Ncdn	nonsynonymous SNV	"Ncdn:NM_001355412:exon7:c.A2120G:p.Q707R,Ncdn:NM_001355413:exon7:c.A2120G:p.Q707R,Ncdn:NM_011986:exon7:c.A2171G:p.Q724R"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.99526382	1	0.9560424	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	126757006	12A2p6	cell line	sgMsh2	126757006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	49	0	0	NA	exonic	AU040320	nonsynonymous SNV	"AU040320:NM_001035525:exon2:c.T80C:p.L27P,AU040320:NM_001035526:exon2:c.T80C:p.L27P,AU040320:NM_133886:exon2:c.T80C:p.L27P"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9917177	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	127128894	12A2p6	cell line	sgMsh2	127128894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	64	0	0	NA	exonic	Tmem35b	synonymous SNV	Tmem35b:NM_001099319:exon3:c.T327C:p.S109S	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9964035	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr4	127355639	12A2p6	cell line	sgMsh2	127355639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	82	0	0	NA	exonic	Gjb5	synonymous SNV	Gjb5:NM_010291:exon2:c.A711G:p.K237K	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9986826	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	97	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9994302	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	60	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9955059	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr4	129182365	12A2p6	cell line	sgMsh2	129182365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	163	0	0	NA	exonic	S100pbp	nonsynonymous SNV	"S100pbp:NM_001379589:exon2:c.G166A:p.E56K,S100pbp:NM_001379591:exon2:c.G166A:p.E56K,S100pbp:NM_001379593:exon2:c.G166A:p.E56K,S100pbp:NM_001379597:exon2:c.G166A:p.E56K,S100pbp:NM_001347203:exon3:c.G166A:p.E56K,S100pbp:NM_001361317:exon3:c.G166A:p.E56K,S100pbp:NM_001379588:exon3:c.G166A:p.E56K,S100pbp:NM_001379590:exon3:c.G166A:p.E56K,S100pbp:NM_001379592:exon3:c.G166A:p.E56K,S100pbp:NM_001379594:exon3:c.G166A:p.E56K,S100pbp:NM_001379595:exon3:c.G166A:p.E56K,S100pbp:NM_001379596:exon3:c.G166A:p.E56K,S100pbp:NM_001379598:exon3:c.G166A:p.E56K,S100pbp:NM_001379599:exon3:c.G166A:p.E56K,S100pbp:NM_029036:exon3:c.G166A:p.E56K"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999858	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	129360081	12A2p6	cell line	sgMsh2	129360081	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	105	0	0	NA	exonic	Zbtb8a	nonsynonymous SNV	Zbtb8a:NM_028603:exon3:c.G619A:p.V207M	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996357	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	130008368	12A2p6	cell line	sgMsh2	130008368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	47	0	0	NA	exonic	Adgrb2	nonsynonymous SNV	"Adgrb2:NM_001199696:exon8:c.A1541G:p.Y514C,Adgrb2:NM_001290714:exon8:c.A1541G:p.Y514C,Adgrb2:NM_001377057:exon8:c.A1541G:p.Y514C,Adgrb2:NM_001377058:exon8:c.A1541G:p.Y514C,Adgrb2:NM_001290715:exon9:c.A1706G:p.Y569C,Adgrb2:NM_001377056:exon9:c.A1706G:p.Y569C,Adgrb2:NM_173071:exon9:c.A1706G:p.Y569C"	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.780324215	1	0.8159055	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	130314024	12A2p6	cell line	sgMsh2	130314024	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	177	0	0	NA	exonic	Fabp3	nonsynonymous SNV	Fabp3:NM_010174:exon3:c.C317T:p.T106I	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999935	ACT	nonsynonymous	ACTA	8	ACTAACTA	NA
M7_p20	chr4	130949986	12A2p6	cell line	sgMsh2	130949986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	82	0	0	NA	exonic	Matn1	nonsynonymous SNV	Matn1:NM_010769:exon3:c.T505C:p.S169P	4qD2.2	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9986826	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	131819618	12A2p6	cell line	sgMsh2	131819618	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.185	22	0	0	NA	exonic	Ptpru	nonsynonymous SNV	"Ptpru:NM_001083119:exon6:c.T761C:p.V254A,Ptpru:NM_011214:exon6:c.T761C:p.V254A"	4qD2.3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.864431017	1	0.9133194	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	131873779	12A2p6	cell line	sgMsh2	131873779	A	G	SNV	Mutect2;Strelka2	2	0.5	3	0	0	NA	exonic	Srsf4	nonsynonymous SNV	Srsf4:NM_020587:exon1:c.A16G:p.I6V	4qD2.3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.09783907	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	131873802	12A2p6	cell line	sgMsh2	131873802	C	G	SNV	Mutect2;Strelka2	2	0.5	4	0	0	NA	exonic	Srsf4	synonymous SNV	Srsf4:NM_020587:exon1:c.C39G:p.A13A	4qD2.3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.0932602	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr4	133061867	12A2p6	cell line	sgMsh2	133061867	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	38	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A418G:p.S140G	4qD2.3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9847852	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	133967000	12A2p6	cell line	sgMsh2	133967000	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	163	0	0	NA	exonic	Hmgn2	nonsynonymous SNV	Hmgn2:NM_016957:exon2:c.C17T:p.A6V	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999858	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	134345942	12A2p6	cell line	sgMsh2	134345942	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	49	0	0	NA	exonic	Slc30a2	nonsynonymous SNV	"Slc30a2:NM_001039677:exon3:c.C299A:p.A100D,Slc30a2:NM_001346578:exon3:c.C59A:p.A20D"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9917177	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	134472876	12A2p6	cell line	sgMsh2	134472876	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	53	0	0	NA	exonic	Stmn1	nonsynonymous SNV	Stmn1:NM_019641:exon4:c.A259G:p.I87V	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9933668	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	134913128	12A2p6	cell line	sgMsh2	134913128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	134	0	0	NA	exonic	Tmem50a	nonsynonymous SNV	Tmem50a:NM_027935:exon2:c.A56G:p.K19R	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999928	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	134924269	12A2p6	cell line	sgMsh2	134924269	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	14	0	0	NA	exonic	Rsrp1	nonsynonymous SNV	Rsrp1:NM_023665:exon2:c.T343C:p.Y115H	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9440888	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	135416591	12A2p6	cell line	sgMsh2	135416591	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	211	0	0	NA	exonic	Rcan3	synonymous SNV	Rcan3:NM_022980:exon5:c.A549G:p.K183K	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999999	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr4	135872245	12A2p6	cell line	sgMsh2	135872245	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	164	0	0	NA	exonic	Pnrc2	synonymous SNV	Pnrc2:NM_026383:exon3:c.A192T:p.G64G	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999866	TTC	synonymous	C	5	CCCCC	NA
M7_p20	chr4	135960856	12A2p6	cell line	sgMsh2	135960856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	83	0	0	NA	exonic	Hmgcl	nonsynonymous SNV	"Hmgcl:NM_001357529:exon8:c.A749G:p.N250S,Hmgcl:NM_008254:exon8:c.A824G:p.N275S,Hmgcl:NM_001357530:exon9:c.A617G:p.N206S"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9987542	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	136951779	12A2p6	cell line	sgMsh2	136951779	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	145	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon2:c.T142C:p.Y48H	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999611	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	136987269	12A2p6	cell line	sgMsh2	136987269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	203	0	0	NA	exonic	Zbtb40	nonsynonymous SNV	Zbtb40:NM_198248:exon16:c.T3208C:p.C1070R	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999985	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	137423336	12A2p6	cell line	sgMsh2	137423336	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	68	0	0	NA	exonic	Cela3b	nonsynonymous SNV	Cela3b:NM_026419:exon6:c.T550C:p.Y184H	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9971223	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	137553774	12A2p6	cell line	sgMsh2	137553774	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.6	5	0	0	NA	exonic	Hspg2	synonymous SNV	Hspg2:NM_008305:exon74:c.C10056T:p.V3352V	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9077673	TCC	synonymous	NA	NA	NA	NA
M7_p20	chr4	137559090	12A2p6	cell line	sgMsh2	137559090	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	34	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon79:c.G10819A:p.V3607M	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.892466618	1	0.9436799	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	137610706	12A2p6	cell line	sgMsh2	137610706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	51	0	0	NA	exonic	Usp48	nonsynonymous SNV	"Usp48:NM_001347227:exon7:c.G791A:p.G264E,Usp48:NM_001355588:exon7:c.G791A:p.G264E,Usp48:NM_130879:exon7:c.G791A:p.G264E"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9925877	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	137717965	12A2p6	cell line	sgMsh2	137717965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	44	0	0	NA	exonic	Rap1gap	nonsynonymous SNV	"Rap1gap:NM_001331215:exon11:c.T857C:p.V286A,Rap1gap:NM_001379234:exon11:c.T857C:p.V286A,Rap1gap:NM_001379235:exon12:c.T920C:p.V307A,Rap1gap:NM_001379236:exon12:c.T764C:p.V255A,Rap1gap:NM_029563:exon12:c.T764C:p.V255A,Rap1gap:NM_001081155:exon13:c.T956C:p.V319A,Rap1gap:NM_001256218:exon13:c.T956C:p.V319A,Rap1gap:NM_001379233:exon13:c.T956C:p.V319A"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9890748	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	138288156	12A2p6	cell line	sgMsh2	138288156	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	30	0	0	NA	exonic	Kif17	nonsynonymous SNV	Kif17:NM_010623:exon8:c.T1615G:p.S539A	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9764031	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	138291492	12A2p6	cell line	sgMsh2	138291492	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	19	0	0	NA	exonic	Kif17	frameshift deletion	"Kif17:NM_001190978:exon8:c.1441delC:p.L482Cfs*4,Kif17:NM_010623:exon10:c.2152delC:p.L719Cfs*4"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.369	41	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7_p20	chr4	139360079	12A2p6	cell line	sgMsh2	139360079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	43	0	0	NA	exonic	Emc1	nonsynonymous SNV	"Emc1:NM_001039200:exon7:c.T689C:p.V230A,Emc1:NM_146157:exon7:c.T689C:p.V230A"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.9884537	GTG	nonsynonymous	TGTGG	11	TGTGGTGTGGT	NA
M7_p20	chr4	139369895	12A2p6	cell line	sgMsh2	139369895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	91	0	0	NA	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon18:c.T2088C:p.S696S,Emc1:NM_146157:exon19:c.T2097C:p.S699S"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992032	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr4	139371773	12A2p6	cell line	sgMsh2	139371773	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	43	0	0	NA	exonic	Emc1	nonsynonymous SNV	"Emc1:NM_001039200:exon20:c.A2557G:p.T853A,Emc1:NM_146157:exon21:c.A2566G:p.T856A"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9884537	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	139410659	12A2p6	cell line	sgMsh2	139410659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	50	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon25:c.T3326C:p.L1109P	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9921647	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	139425796	12A2p6	cell line	sgMsh2	139425796	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon43:c.G6164A:p.G2055D	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999195	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	139463368	12A2p6	cell line	sgMsh2	139463368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	45	0	0	NA	exonic	Ubr4	nonsynonymous SNV	Ubr4:NM_001160319:exon82:c.A12185G:p.K4062R	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9896629	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	139965403	12A2p6	cell line	sgMsh2	139965403	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	67	0	0	NA	exonic	Klhdc7a	nonsynonymous SNV	Klhdc7a:NM_173427:exon1:c.G2232T:p.K744N	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9969573	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	140028713	12A2p6	cell line	sgMsh2	140028713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	62	0	0	NA	exonic	Igsf21	synonymous SNV	Igsf21:NM_198610:exon7:c.A1086G:p.L362L	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9959796	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr4	140710387	12A2p6	cell line	sgMsh2	140710387	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	83	0	0	NA	exonic	Rcc2	nonsynonymous SNV	Rcc2:NM_173867:exon4:c.T428G:p.L143R	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9987542	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	140737313	12A2p6	cell line	sgMsh2	140737313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.411	93	0	0	NA	exonic	Padi6	nonsynonymous SNV	Padi6:NM_153106:exon6:c.T604C:p.S202P	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9992875	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	141247451	12A2p6	cell line	sgMsh2	141247451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	47	0	0	NA	exonic	Arhgef19	synonymous SNV	"Arhgef19:NM_001379652:exon4:c.T762C:p.D254D,Arhgef19:NM_172520:exon5:c.T762C:p.D254D,Arhgef19:NM_001379647:exon6:c.T762C:p.D254D"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9907467	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr4	141247457	12A2p6	cell line	sgMsh2	141247457	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	47	0	0	NA	exonic	Arhgef19	nonsynonymous SNV	"Arhgef19:NM_001379652:exon4:c.C768A:p.N256K,Arhgef19:NM_172520:exon5:c.C768A:p.N256K,Arhgef19:NM_001379647:exon6:c.C768A:p.N256K"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9907467	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	141493484	12A2p6	cell line	sgMsh2	141493484	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	70	0	0	NA	exonic	Spen	synonymous SNV	"Spen:NM_001347235:exon5:c.G1161A:p.Q387Q,Spen:NM_019763:exon5:c.G1161A:p.Q387Q"	4qD3	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.997426	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr4	141628313	12A2p6	cell line	sgMsh2	141628313	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	39	0	0	NA	exonic	Plekhm2	nonsynonymous SNV	"Plekhm2:NM_001347237:exon16:c.A2575T:p.M859L,Plekhm2:NM_001033150:exon17:c.A2635T:p.M879L"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9856008	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	141629940	12A2p6	cell line	sgMsh2	141629940	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	31	0	0	NA	exonic	Plekhm2	synonymous SNV	"Plekhm2:NM_001347237:exon13:c.G2160A:p.A720A,Plekhm2:NM_001033150:exon14:c.G2220A:p.A740A"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9776579	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr4	141776940	12A2p6	cell line	sgMsh2	141776940	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	31	0	0	NA	exonic	Dnajc16	synonymous SNV	Dnajc16:NM_172338:exon5:c.A708T:p.L236L	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9776579	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr4	143135450	12A2p6	cell line	sgMsh2	143135450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	170	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon8:c.A1269G:p.S423S,Prdm2:NM_001256380:exon8:c.A1269G:p.S423S"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999904	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr4	143180932	12A2p6	cell line	sgMsh2	143180932	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	85	0	0	NA	exonic	Prdm2	synonymous SNV	"Prdm2:NM_001081355:exon3:c.A69G:p.R23R,Prdm2:NM_001256380:exon3:c.A69G:p.R23R"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9988859	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	143726070	12A2p6	cell line	sgMsh2	143726070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.755	81	0	0	NA	exonic	Pramel24	nonsynonymous SNV	Pramel24:NM_001085412:exon2:c.A70G:p.T24A	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	2	1	1	0.998607	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	143810741	12A2p6	cell line	sgMsh2	143810741	G	A	SNV	Mutect2;Strelka2	2	0.158	119	0	0	NA	exonic	Pramel26	nonsynonymous SNV	"Pramel26:NM_001005371:exon4:c.C1019T:p.T340I,Pramel26:NM_001347257:exon4:c.C1019T:p.T340I"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.738270815	2	0.7123329	AGT	nonsynonymous	TCAG	8	TCAGTCAG	NA
M7_p20	chr4	143850703	12A2p6	cell line	sgMsh2	143850703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	147	0	0	NA	exonic	Pramel27	synonymous SNV	Pramel27:NM_177571:exon2:c.A54G:p.T18T	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999652	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr4	143897144	12A2p6	cell line	sgMsh2	143897144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	299	0	0	NA	exonic	Pramel11	synonymous SNV	Pramel11:NM_001085414:exon3:c.T459C:p.L153L	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	0.836395417	1	0.9753472	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr4	143949937	12A2p6	cell line	sgMsh2	143949937	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	291	0	0	NA	exonic	Pramel16	nonsynonymous SNV	Pramel16:NM_001126315:exon2:c.T596A:p.I199N	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	1.21E-08	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	144159644	12A2p6	cell line	sgMsh2	144159644	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	191	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon3:c.A383G:p.Q128R	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.999997	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	144271678	12A2p6	cell line	sgMsh2	144271678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	324	0	0	NA	exonic	Pramel5	nonsynonymous SNV	Pramel5:NM_001085418:exon4:c.A994G:p.T332A	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	2.75E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	144373063	12A2p6	cell line	sgMsh2	144373063	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	183	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.G1131T:p.K377N	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999954	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	144418410	12A2p6	cell line	sgMsh2	144418410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	50	0	0	NA	exonic	1700012P22Rik	synonymous SNV	1700012P22Rik:NM_027056:exon4:c.C585T:p.R195R	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9921647	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr4	145065883	12A2p6	cell line	sgMsh2	145065883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	65	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon57:c.T11276C:p.V3759A,Vps13d:NM_001276465:exon58:c.T11273C:p.V3758A"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9965984	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	145110843	12A2p6	cell line	sgMsh2	145110843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	66	0	0	NA	exonic	Vps13d	nonsynonymous SNV	"Vps13d:NM_001276502:exon35:c.T8189C:p.L2730P,Vps13d:NM_001276465:exon36:c.T8189C:p.L2730P"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9967828	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	145156208	12A2p6	cell line	sgMsh2	145156208	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	78	0	0	NA	exonic	Vps13d	synonymous SNV	"Vps13d:NM_001276502:exon18:c.T2814C:p.S938S,Vps13d:NM_001276465:exon19:c.T2814C:p.S938S"	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9983529	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr4	145293180	12A2p6	cell line	sgMsh2	145293180	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	40	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon5:c.A422T:p.K141M	4qE1	chr4-21910160-145468270	3	2	1	0.9	4.205340083	NA	1	1	1	0.9863733	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	147390490	12A2p6	cell line	sgMsh2	147390490	G	T	SNV	Mutect2;MuSe;Vardict	3	0.058	409	0	0	NA	exonic	Zfp978	stopgain	Zfp978:NM_001378742:exon5:c.G493T:p.G165X	4qE1	chr4-146067868-147676356	5.17241257	3.17241257	2	0.9	4.205340083	NA	1	0.271010805	3	1	AGG	nonsynonymous	TCAA	8	TCAATCAA	NA
M7_p20	chr4	147510755	12A2p6	cell line	sgMsh2	147510755	T	G	SNV	Mutect2;Vardict	2	0.084	877	0	0	NA	exonic	Zfp982	synonymous SNV	"Zfp982:NM_001039209:exon2:c.T33G:p.G11G,Zfp982:NM_001365422:exon3:c.T33G:p.G11G,Zfp982:NM_001371349:exon3:c.T33G:p.G11G,Zfp982:NM_001371348:exon4:c.T33G:p.G11G"	4qE1	chr4-146067868-147676356	5.17241257	3.17241257	2	0.9	4.205340083	NA	1	0.392498408	3	1.12E-09	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr4	147613749	12A2p6	cell line	sgMsh2	147613749	T	G	SNV	Mutect2;Vardict	2	0.126	55	0	0	NA	exonic	Zfp979	nonsynonymous SNV	Zfp979:NM_145078:exon5:c.A502C:p.I168L	4qE1	chr4-146067868-147676356	5.17241257	3.17241257	2	0.9	4.205340083	NA	1	0.588747612	2	0.000958314	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	148016905	12A2p6	cell line	sgMsh2	148016905	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	230	0	0	NA	exonic	Clcn6	nonsynonymous SNV	Clcn6:NM_011929:exon13:c.T1195A:p.C399S	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999997	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	148480940	12A2p6	cell line	sgMsh2	148480940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	66	0	0	NA	exonic	Mtor	nonsynonymous SNV	Mtor:NM_020009:exon20:c.A3106G:p.T1036A	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9967828	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	148671394	12A2p6	cell line	sgMsh2	148671395	GG	-	Deletion	Mutect2;Vardict	2	0.302	26	0	0	NA	exonic	Gm572	frameshift deletion	Gm572:NM_001085505:exon11:c.1166_1167del:p.V393Gfs*41	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	G	12	GGGGGGGGGGGG	-2
M7_p20	chr4	148674577	12A2p6	cell line	sgMsh2	148674577	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	43	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon11:c.A1123G:p.T375A	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	2	1	1	0.9884537	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	149237413	12A2p6	cell line	sgMsh2	149237413	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	168	0	0	NA	exonic	Kif1b	synonymous SNV	Kif1b:NM_008441:exon21:c.A3048G:p.V1016V	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9999892	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr4	150866443	12A2p6	cell line	sgMsh2	150866443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	116	0	0	NA	exonic	Errfi1	synonymous SNV	"Errfi1:NM_001356323:exon4:c.A327G:p.Q109Q,Errfi1:NM_133753:exon4:c.A327G:p.Q109Q"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.999803	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr4	150897465	12A2p6	cell line	sgMsh2	150897465	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	29	0	0	NA	exonic	Park7	nonsynonymous SNV	Park7:NM_020569:exon7:c.A416T:p.Y139F	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9750797	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	151145372	12A2p6	cell line	sgMsh2	151145372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	48	0	0	NA	exonic	Camta1	synonymous SNV	Camta1:NM_001081557:exon9:c.A1002G:p.A334A	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9912455	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr4	151145398	12A2p6	cell line	sgMsh2	151145398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	39	0	0	NA	exonic	Camta1	nonsynonymous SNV	Camta1:NM_001081557:exon9:c.A976G:p.R326G	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9856008	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	151983212	12A2p6	cell line	sgMsh2	151983212	T	-	Deletion	Strelka2;Vardict	2	0.25	20	0	0	NA	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7_p20	chr4	152108328	12A2p6	cell line	sgMsh2	152108328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	106	0	0	NA	exonic	Plekhg5	nonsynonymous SNV	"Plekhg5:NM_001285999:exon14:c.A1750G:p.M584V,Plekhg5:NM_001374783:exon15:c.A1711G:p.M571V"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996555	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	152138902	12A2p6	cell line	sgMsh2	152138902	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.336	12	0	0	NA	exonic	Espn	nonsynonymous SNV	Espn:NM_207687:exon4:c.T692G:p.V231G	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9377897	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	152377002	12A2p6	cell line	sgMsh2	152377002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	68	0	0	NA	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_029216:exon24:c.T3659A:p.I1220N,Chd5:NM_001081376:exon25:c.T3770A:p.I1257N,Chd5:NM_001369243:exon25:c.T3770A:p.I1257N"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9971223	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	153432325	12A2p6	cell line	sgMsh2	153432325	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	61	0	0	NA	exonic	Ajap1	synonymous SNV	Ajap1:NM_001099299:exon2:c.G558A:p.T186T	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9957493	CCG	synonymous	C	5	CCCCC	NA
M7_p20	chr4	154267441	12A2p6	cell line	sgMsh2	154267441	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	107	0	0	NA	exonic	Megf6	nonsynonymous SNV	Megf6:NM_001162977:exon28:c.C3496T:p.R1166C	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9996742	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	154291064	12A2p6	cell line	sgMsh2	154291064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	15	0	0	NA	exonic	Arhgef16	nonsynonymous SNV	Arhgef16:NM_001112744:exon2:c.T472C:p.Y158H	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9469916	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	42	0	0	NA	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9877977	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	155753972	12A2p6	cell line	sgMsh2	155753972	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	128	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C587T:p.A196V	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	0.341099807	3	0.998144	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	155753982	12A2p6	cell line	sgMsh2	155753982	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	121	0	0	NA	exonic	Atad3a	nonsynonymous SNV	Atad3a:NM_179203:exon6:c.C577G:p.R193G	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	0.308391606	3	0.9997718	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr4	156177081	12A2p6	cell line	sgMsh2	156177081	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	0	0	NA	exonic	Agrn	nonsynonymous SNV	"Agrn:NM_001369026:exon8:c.A1358G:p.E453G,Agrn:NM_021604:exon9:c.A1679G:p.E560G"	4qE2	chr4-147681972-156223608	3	2	1	0.9	4.205340083	NA	1	1	1	0.9976978	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	3605660	12A2p6	cell line	sgMsh2	3605660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	147	0	0	NA	exonic	Pex1	synonymous SNV	"Pex1:NM_001293806:exon5:c.A486G:p.P162P,Pex1:NM_027777:exon5:c.A486G:p.P162P"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9999341	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	3693883	12A2p6	cell line	sgMsh2	3693883	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	93	0	0	NA	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001289528:exon18:c.C1584T:p.G528G,Ankib1:NM_001003909:exon19:c.C2406T:p.G802G,Ankib1:NM_001289527:exon19:c.C2424T:p.G808G,Ankib1:NM_001289529:exon19:c.C951T:p.G317G"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr5	3772546	12A2p6	cell line	sgMsh2	3772546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	222	0	0	NA	exonic	Ankib1	synonymous SNV	"Ankib1:NM_001003909:exon2:c.T159C:p.A53A,Ankib1:NM_001289527:exon2:c.T159C:p.A53A"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999932	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	3818616	12A2p6	cell line	sgMsh2	3818616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	78	0	0	NA	exonic	Krit1	nonsynonymous SNV	"Krit1:NM_001170552:exon9:c.A1079G:p.H360R,Krit1:NM_030675:exon9:c.A1079G:p.H360R"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9983529	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	3836853	12A2p6	cell line	sgMsh2	3836853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	119	0	0	NA	exonic	Krit1	nonsynonymous SNV	Krit1:NM_030675:exon16:c.A2101G:p.S701G	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998334	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	6770788	12A2p6	cell line	sgMsh2	6770788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	235	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.C2274T:p.C758C	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999962	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr5	6771852	12A2p6	cell line	sgMsh2	6771852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	496	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.A1210C:p.R404R	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.742943415	2	0.9999283	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr5	7975687	12A2p6	cell line	sgMsh2	7975687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	164	0	0	NA	exonic	Steap4	nonsynonymous SNV	Steap4:NM_054098:exon2:c.A247G:p.R83G	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	0.714907814	2	0.9610137	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	8686194	12A2p6	cell line	sgMsh2	8686194	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	185	0	0	NA	exonic	Abcb1a	frameshift deletion	Abcb1a:NM_011076:exon9:c.586delT:p.F197Lfs*4	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr5	8955418	12A2p6	cell line	sgMsh2	8955418	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	136	0	0	NA	exonic	Abcb4	synonymous SNV	Abcb4:NM_008830:exon26:c.C3300T:p.L1100L	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999356	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr5	8989678	12A2p6	cell line	sgMsh2	8989678	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	160	0	0	NA	exonic	Crot	nonsynonymous SNV	Crot:NM_023733:exon4:c.A168C:p.Q56H	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	9118463	12A2p6	cell line	sgMsh2	9118463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	124	0	0	NA	exonic	Tmem243	nonsynonymous SNV	Tmem243:NM_001081029:exon5:c.T244C:p.Y82H	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998741	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	9422342	12A2p6	cell line	sgMsh2	9422342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	240	0	0	NA	exonic	Elapor2	synonymous SNV	"Elapor2:NM_001359885:exon7:c.T699C:p.T233T,Elapor2:NM_001359886:exon7:c.T699C:p.T233T,Elapor2:NM_001359884:exon8:c.T1038C:p.T346T,Elapor2:NM_172706:exon8:c.T1038C:p.T346T"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999998	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	14679484	12A2p6	cell line	sgMsh2	14679484	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	223	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.A8355G:p.L2785L,Pclo:NM_011995:exon5:c.A8355G:p.L2785L"	5qA1	chr5-3344373-14859185	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	15032906	12A2p6	cell line	sgMsh2	15032906	A	-	Deletion	Mutect2;Vardict	2	0.036	711	0	0	NA	exonic	Gm17019	frameshift deletion	Gm17019:NM_182957:exon1:c.33delT:p.Q12Rfs*47	5qA2	chr5-14910153-15714905	7	5	2	0.9	4.205340083	NA	1	0.168213603	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr5	16246736	12A2p6	cell line	sgMsh2	16246736	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	128	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110844:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110845:exon7:c.A597G:p.E199E,Cacna2d1:NM_001110846:exon7:c.A597G:p.E199E,Cacna2d1:NM_009784:exon7:c.A597G:p.E199E"	5qA2	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.836395417	1	0.9395771	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	16246742	12A2p6	cell line	sgMsh2	16246742	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	128	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110844:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110845:exon7:c.T603C:p.P201P,Cacna2d1:NM_001110846:exon7:c.T603C:p.P201P,Cacna2d1:NM_009784:exon7:c.T603C:p.P201P"	5qA2	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.836395417	1	0.9395771	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	16359015	12A2p6	cell line	sgMsh2	16359015	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	80	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.G2623A:p.D875N,Cacna2d1:NM_009784:exon32:c.G2638A:p.D880N,Cacna2d1:NM_001110843:exon33:c.G2695A:p.D899N,Cacna2d1:NM_001110844:exon33:c.G2659A:p.D887N,Cacna2d1:NM_001110845:exon33:c.G2644A:p.D882N"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.998527	TGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	16578469	12A2p6	cell line	sgMsh2	16578469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	199	0	0	NA	exonic	Hgf	nonsynonymous SNV	"Hgf:NM_001289461:exon7:c.A761G:p.N254S,Hgf:NM_001289458:exon8:c.A776G:p.N259S,Hgf:NM_001289459:exon8:c.A776G:p.N259S,Hgf:NM_010427:exon8:c.A776G:p.N259S"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999981	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	16618861	12A2p6	cell line	sgMsh2	16618861	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.242	211	0	0	NA	exonic	Hgf	frameshift insertion	"Hgf:NM_001289461:exon18:c.2041dupA:p.M682Nfs*58,Hgf:NM_001289458:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_001289459:exon19:c.2056dupA:p.M687Nfs*58,Hgf:NM_010427:exon19:c.2056dupA:p.M687Nfs*58"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ACA	frameshift	NA	NA	NA	1
M7_p20	chr5	20569240	12A2p6	cell line	sgMsh2	20569240	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	94	0	0	NA	exonic	Magi2	nonsynonymous SNV	"Magi2:NM_001170745:exon14:c.T2197G:p.F733V,Magi2:NM_015823:exon15:c.T2239G:p.F747V,Magi2:NM_001170746:exon16:c.T2728G:p.F910V"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	20896261	12A2p6	cell line	sgMsh2	20896261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	111	0	0	NA	exonic	Rsbn1l	synonymous SNV	Rsbn1l:NM_001080977:exon8:c.T2280C:p.S760S	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997395	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	20896655	12A2p6	cell line	sgMsh2	20896655	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	82	0	0	NA	exonic	Rsbn1l	nonsynonymous SNV	Rsbn1l:NM_001080977:exon8:c.G1886A:p.G629D	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	21250830	12A2p6	cell line	sgMsh2	21250830	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	136	0	0	NA	exonic	Gsap	nonsynonymous SNV	"Gsap:NM_001359877:exon15:c.A1129C:p.T377P,Gsap:NM_175437:exon15:c.A1129C:p.T377P"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.275683405	3	0.999996	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	21303253	12A2p6	cell line	sgMsh2	21303253	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	243	0	0	NA	exonic	Ccdc146	nonsynonymous SNV	Ccdc146:NM_029195:exon14:c.A1796G:p.N599S	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9970519	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	21796579	12A2p6	cell line	sgMsh2	21796579	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	96	0	0	NA	exonic	Psmc2	synonymous SNV	"Psmc2:NM_001368661:exon4:c.T237C:p.D79D,Psmc2:NM_011188:exon5:c.T237C:p.D79D"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993975	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr5	22134610	12A2p6	cell line	sgMsh2	22134610	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	275	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon7:c.G743A:p.G248D	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	2.81E-08	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	22550222	12A2p6	cell line	sgMsh2	22550222	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	133	0	0	NA	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon1:c.A42G:p.Q14Q	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.850413217	1	0.9659874	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr5	23496459	12A2p6	cell line	sgMsh2	23496459	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	116	0	0	NA	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon18:c.A2507T:p.H836L	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	23548558	12A2p6	cell line	sgMsh2	23548558	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	134	0	0	NA	exonic	Srpk2	nonsynonymous SNV	"Srpk2:NM_001359175:exon3:c.T196C:p.Y66H,Srpk2:NM_009274:exon3:c.T196C:p.Y66H,Srpk2:NM_001359172:exon4:c.T229C:p.Y77H,Srpk2:NM_001359173:exon4:c.T229C:p.Y77H,Srpk2:NM_001359174:exon5:c.T196C:p.Y66H"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.999928	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	24386133	12A2p6	cell line	sgMsh2	24386133	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	30	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon10:c.C2298T:p.A766A	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9764031	AGG	synonymous	AAGG	8	AAGGAAGG	NA
M7_p20	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	0	0	NA	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9884537	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	24415437	12A2p6	cell line	sgMsh2	24415437	G	-	Deletion	Mutect2;Vardict	2	0.159	49	0	0	NA	exonic	Asic3	frameshift deletion	"Asic3:NM_001310474:exon2:c.585delG:p.A197Qfs*76,Asic3:NM_183000:exon2:c.585delG:p.A197Qfs*76"	5qA3	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.742943415	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7_p20	chr5	29435567	12A2p6	cell line	sgMsh2	29435567	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	94	0	0	NA	exonic	Nom1	nonsynonymous SNV	Nom1:NM_001033457:exon1:c.A890T:p.K297I	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.7691684	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	30145301	12A2p6	cell line	sgMsh2	30145301	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	183	0	0	NA	exonic	Hadha	nonsynonymous SNV	Hadha:NM_178878:exon4:c.A248C:p.D83A	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999954	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	30534207	12A2p6	cell line	sgMsh2	30534207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	98	0	0	NA	exonic	Cib4	nonsynonymous SNV	Cib4:NM_028483:exon3:c.T169C:p.S57P	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	1	0.9994612	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	30958349	12A2p6	cell line	sgMsh2	30958349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	93	0	0	NA	exonic	Preb	synonymous SNV	"Preb:NM_001294302:exon5:c.A636G:p.T212T,Preb:NM_016703:exon5:c.A636G:p.T212T"	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	31058101	12A2p6	cell line	sgMsh2	31058101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	66	0	0	NA	exonic	Cad	synonymous SNV	"Cad:NM_001289522:exon3:c.A255G:p.G85G,Cad:NM_001289523:exon3:c.A255G:p.G85G,Cad:NM_023525:exon3:c.A255G:p.G85G"	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.827050216	1	0.09839095	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	31073249	12A2p6	cell line	sgMsh2	31073249	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	81	0	0	NA	exonic	Cad	nonsynonymous SNV	"Cad:NM_001289522:exon30:c.A4836G:p.I1612M,Cad:NM_001289523:exon30:c.A4836G:p.I1612M,Cad:NM_023525:exon30:c.A4836G:p.I1612M"	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	1	0.998607	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.542	92	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M7_p20	chr5	31208020	12A2p6	cell line	sgMsh2	31208020	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	185	0	0	NA	exonic	Ppm1g	nonsynonymous SNV	Ppm1g:NM_008014:exon3:c.T269C:p.L90P	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	31246336	12A2p6	cell line	sgMsh2	31246336	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	100	0	0	NA	exonic	Nrbp1	nonsynonymous SNV	Nrbp1:NM_001347326:exon8:c.T676A:p.F226I	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	TTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr5	31295080	12A2p6	cell line	sgMsh2	31295080	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.099	89	0	0	NA	exonic	Fndc4	nonsynonymous SNV	"Fndc4:NM_001356945:exon3:c.A163G:p.R55G,Fndc4:NM_001356946:exon3:c.A163G:p.R55G,Fndc4:NM_001378890:exon3:c.A163G:p.R55G,Fndc4:NM_022424:exon3:c.A163G:p.R55G"	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.462587409	2	0.9502776	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	32262374	12A2p6	cell line	sgMsh2	32262374	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	192	0	0	NA	exonic	Plb1	nonsynonymous SNV	Plb1:NM_001081407:exon3:c.T74A:p.I25N	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	32827128	12A2p6	cell line	sgMsh2	32827128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	85	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.A5022G:p.K1674K	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	2	1	1	0.9988859	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr5	32827513	12A2p6	cell line	sgMsh2	32827513	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	105	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.T4637C:p.V1546A	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9882771	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	32844169	12A2p6	cell line	sgMsh2	32844169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	111	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon3:c.A346G:p.M116V	5qB1	chr5-16012095-32990866	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997395	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	33643764	12A2p6	cell line	sgMsh2	33643764	G	C	SNV	Mutect2;Vardict	2	0.103	47	0	0	NA	exonic	Slbp	nonsynonymous SNV	"Slbp:NM_001289724:exon5:c.C542G:p.A181G,Slbp:NM_001289725:exon5:c.C497G:p.A166G,Slbp:NM_009193:exon6:c.C602G:p.A201G"	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.48127781	2	0.8941886	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	34129276	12A2p6	cell line	sgMsh2	34129276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	136	0	0	NA	exonic	Poln	nonsynonymous SNV	"Poln:NM_001289803:exon4:c.A547G:p.T183A,Poln:NM_181857:exon4:c.A547G:p.T183A,Poln:NM_001289804:exon5:c.A547G:p.T183A"	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.784996816	1	0.6528653	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	34650362	12A2p6	cell line	sgMsh2	34650362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	152	0	0	NA	exonic	Nop14	nonsynonymous SNV	Nop14:NM_029278:exon8:c.A1255G:p.K419E	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.682199614	2	0.9873094	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	34834302	12A2p6	cell line	sgMsh2	34834302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	253	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon28:c.A3610G:p.K1204E	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	35087007	12A2p6	cell line	sgMsh2	35087007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	37	0	0	NA	exonic	Dok7	nonsynonymous SNV	"Dok7:NM_172708:exon9:c.T1594C:p.S532P,Dok7:NM_001348478:exon10:c.T1705C:p.S569P"	5qB2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9839242	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	35564452	12A2p6	cell line	sgMsh2	35564452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	61	0	0	NA	exonic	Trmt44	nonsynonymous SNV	Trmt44:NM_030208:exon9:c.T1366C:p.C456R	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.719580414	1	0.544948	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	37370761	12A2p6	cell line	sgMsh2	37370761	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	112	0	0	NA	exonic	Evc2	synonymous SNV	Evc2:NM_145920:exon8:c.G1113A:p.E371E	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997537	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr5	37393177	12A2p6	cell line	sgMsh2	37393177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	48	0	0	NA	exonic	Evc2	nonsynonymous SNV	Evc2:NM_145920:exon14:c.C2534A:p.P845H	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9912455	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	38106637	12A2p6	cell line	sgMsh2	38106637	A	-	Deletion	Mutect2;Vardict	2	0.126	119	0	0	NA	exonic	Stx18	frameshift deletion	"Stx18:NM_001359398:exon3:c.264delA:p.R90Efs*13,Stx18:NM_001289535:exon4:c.426delA:p.R144Efs*13,Stx18:NM_026959:exon4:c.426delA:p.R144Efs*13"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.588747612	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr5	38144744	12A2p6	cell line	sgMsh2	38144744	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	160	0	0	NA	exonic	Nsg1	nonsynonymous SNV	"Nsg1:NM_001359090:exon3:c.T322C:p.Y108H,Nsg1:NM_001359091:exon4:c.T322C:p.Y108H,Nsg1:NM_001359092:exon4:c.T322C:p.Y108H,Nsg1:NM_010942:exon4:c.T322C:p.Y108H"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	39614551	12A2p6	cell line	sgMsh2	39614551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	62	0	0	NA	exonic	Hs3st1	nonsynonymous SNV	Hs3st1:NM_010474:exon2:c.T748C:p.F250L	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9764312	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	41794340	12A2p6	cell line	sgMsh2	41794340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	48	0	0	NA	exonic	Bod1l	synonymous SNV	"Bod1l:NM_001081422:exon25:c.T8727C:p.S2909S,Bod1l:NM_001310601:exon25:c.T8727C:p.S2909S"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9912455	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	41817204	12A2p6	cell line	sgMsh2	41817204	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	260	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6766T:p.R2256C,Bod1l:NM_001310601:exon10:c.C6766T:p.R2256C"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	41817776	12A2p6	cell line	sgMsh2	41817776	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	81	0	0	NA	exonic	Bod1l	nonsynonymous SNV	"Bod1l:NM_001081422:exon10:c.C6194T:p.T2065I,Bod1l:NM_001310601:exon10:c.C6194T:p.T2065I"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.998607	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	44541790	12A2p6	cell line	sgMsh2	44541790	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	238	0	0	NA	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon3:c.A305G:p.Y102C,Ldb2:NM_001286348:exon3:c.A305G:p.Y102C,Ldb2:NM_001347349:exon3:c.A305G:p.Y102C,Ldb2:NM_001359070:exon3:c.A305G:p.Y102C,Ldb2:NM_001359071:exon3:c.A305G:p.Y102C,Ldb2:NM_010698:exon3:c.A305G:p.Y102C"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	45512033	12A2p6	cell line	sgMsh2	45512033	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	84	0	0	NA	exonic	Lap3	nonsynonymous SNV	Lap3:NM_024434:exon13:c.T1523G:p.I508S	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9896653	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	48259654	12A2p6	cell line	sgMsh2	48259654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	318	0	0	NA	exonic	Slit2	nonsynonymous SNV	"Slit2:NM_178804:exon28:c.A3035G:p.Y1012C,Slit2:NM_001291228:exon29:c.A3047G:p.Y1016C,Slit2:NM_001291227:exon30:c.A3071G:p.Y1024C"	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	3.45E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	48374537	12A2p6	cell line	sgMsh2	48374537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	119	0	0	NA	exonic	Pacrgl	nonsynonymous SNV	Pacrgl:NM_025755:exon3:c.C206A:p.P69H	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998334	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	49987499	12A2p6	cell line	sgMsh2	49987499	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	46	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon12:c.G1751A:p.S584N	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9902196	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	50025736	12A2p6	cell line	sgMsh2	50025736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	112	0	0	NA	exonic	Adgra3	synonymous SNV	Adgra3:NM_133911:exon2:c.A267G:p.S89S	5qB3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997537	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr5	52161595	12A2p6	cell line	sgMsh2	52161595	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	137	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon8:c.G1477A:p.E493K,Dhx15:NM_007839:exon8:c.G1477A:p.E493K"	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.640146213	2	0.9959285	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	52376478	12A2p6	cell line	sgMsh2	52376478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	24	0	0	NA	exonic	Ccdc149	nonsynonymous SNV	"Ccdc149:NM_001256059:exon12:c.A1345T:p.T449S,Ccdc149:NM_001379231:exon13:c.A1378T:p.T460S"	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9673015	GTC	nonsynonymous	TCAG	9	TCAGTCAGT	NA
M7_p20	chr5	52538466	12A2p6	cell line	sgMsh2	52538466	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	107	0	0	NA	exonic	Lgi2	nonsynonymous SNV	"Lgi2:NM_144945:exon7:c.G1150T:p.V384F,Lgi2:NM_001310604:exon8:c.G1126T:p.V376F"	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	53200387	12A2p6	cell line	sgMsh2	53200387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	110	0	0	NA	exonic	Sel1l3	nonsynonymous SNV	Sel1l3:NM_172710:exon2:c.T262G:p.F88V	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997245	AAG	nonsynonymous	AAAT	11	AAATAAATAAA	NA
M7_p20	chr5	53642073	12A2p6	cell line	sgMsh2	53642073	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	154	0	0	NA	exonic	Rbpj	frameshift deletion	"Rbpj:NM_001080927:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_001080928:exon4:c.199delA:p.E70Sfs*20,Rbpj:NM_001359152:exon4:c.205delA:p.E72Sfs*20,Rbpj:NM_009035:exon4:c.322delA:p.E111Sfs*20,Rbpj:NM_001277116:exon6:c.265delA:p.E92Sfs*20"	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M7_p20	chr5	53700084	12A2p6	cell line	sgMsh2	53700084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	105	0	0	NA	exonic	Cckar	nonsynonymous SNV	"Cckar:NM_001347354:exon5:c.T770C:p.V257A,Cckar:NM_009827:exon5:c.T983C:p.V328A"	5qC1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996357	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	62730687	12A2p6	cell line	sgMsh2	62730687	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	81	0	0	NA	exonic	Arap2	nonsynonymous SNV	Arap2:NM_178407:exon6:c.T1315G:p.F439V	5qC3.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.998607	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	63898504	12A2p6	cell line	sgMsh2	63898504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	35	0	0	NA	exonic	0610040J01Rik	synonymous SNV	0610040J01Rik:NM_029554:exon4:c.A582C:p.T194T	5qC3.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9820559	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	65164611	12A2p6	cell line	sgMsh2	65164611	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	185	0	0	NA	exonic	Klhl5	nonsynonymous SNV	"Klhl5:NM_001347355:exon10:c.G1559T:p.G520V,Klhl5:NM_175174:exon10:c.G1979T:p.G660V"	5qC3.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	73068782	12A2p6	cell line	sgMsh2	73068782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	49	0	0	NA	exonic	Fryl	nonsynonymous SNV	Fryl:NM_028194:exon44:c.T5537C:p.L1846P	5qC3.2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9917177	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	74536962	12A2p6	cell line	sgMsh2	74536962	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	125	0	0	NA	exonic	Fip1l1	nonsynonymous SNV	"Fip1l1:NM_001159573:exon3:c.C148A:p.P50T,Fip1l1:NM_001159574:exon3:c.C148A:p.P50T,Fip1l1:NM_001376964:exon3:c.C148A:p.P50T,Fip1l1:NM_001376965:exon3:c.C148A:p.P50T,Fip1l1:NM_024183:exon3:c.C148A:p.P50T"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8613925	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	74627398	12A2p6	cell line	sgMsh2	74627398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	74	0	0	NA	exonic	Lnx1	nonsynonymous SNV	"Lnx1:NM_001159579:exon3:c.A437G:p.N146S,Lnx1:NM_001159580:exon3:c.A437G:p.N146S,Lnx1:NM_001359074:exon3:c.A260G:p.N87S,Lnx1:NM_010727:exon3:c.A437G:p.N146S,Lnx1:NM_001159577:exon4:c.A737G:p.N246S,Lnx1:NM_001159578:exon5:c.A260G:p.N87S"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	75176693	12A2p6	cell line	sgMsh2	75176693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	149	0	0	NA	exonic	Pdgfra	nonsynonymous SNV	"Pdgfra:NM_001083316:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347718:exon10:c.T1391G:p.V464G,Pdgfra:NM_001347719:exon10:c.T1391G:p.V464G,Pdgfra:NM_011058:exon10:c.T1391G:p.V464G"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999689	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	75176795	12A2p6	cell line	sgMsh2	75176795	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	70	0	0	NA	exonic	Pdgfra	frameshift deletion	"Pdgfra:NM_001083316:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_001347718:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_001347719:exon10:c.1493delC:p.A498Efs*16,Pdgfra:NM_011058:exon10:c.1493delC:p.A498Efs*16"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GCA	frameshift	NA	NA	NA	-1
M7_p20	chr5	75620996	12A2p6	cell line	sgMsh2	75620996	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	127	0	0	NA	exonic	Kit	nonsynonymous SNV	"Kit:NM_001122733:exon6:c.G1084T:p.G362W,Kit:NM_021099:exon6:c.G1084T:p.G362W"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.51865861	2	0.9996467	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	75962720	12A2p6	cell line	sgMsh2	75962720	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	87	0	0	NA	exonic	Kdr	nonsynonymous SNV	"Kdr:NM_001363216:exon10:c.T1408C:p.Y470H,Kdr:NM_010612:exon10:c.T1408C:p.Y470H"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990037	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Strelka2;Vardict	2	0.2216	185	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M7_p20	chr5	76848823	12A2p6	cell line	sgMsh2	76848823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	66	0	0	NA	exonic	Cracd	synonymous SNV	Cracd:NM_001163793:exon3:c.T127C:p.L43L	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.644818813	2	0.8167308	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr5	77060825	12A2p6	cell line	sgMsh2	77060825	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	93	0	0	NA	exonic	Thegl	nonsynonymous SNV	Thegl:NM_027970:exon8:c.T1199C:p.V400A	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9992875	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	77087800	12A2p6	cell line	sgMsh2	77087800	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	78	0	0	NA	exonic	Hopx	nonsynonymous SNV	"Hopx:NM_001159901:exon2:c.G161A:p.R54H,Hopx:NM_001159900:exon3:c.G161A:p.R54H,Hopx:NM_175606:exon3:c.G161A:p.R54H"	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9983529	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	77320316	12A2p6	cell line	sgMsh2	77320316	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	109	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T462C:p.I154I	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	77345396	12A2p6	cell line	sgMsh2	77345396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	121	0	0	NA	exonic	Polr2b	nonsynonymous SNV	Polr2b:NM_153798:exon23:c.T3224C:p.M1075T	5qC3.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	81660332	12A2p6	cell line	sgMsh2	81660332	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	66	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon10:c.C1739A:p.A580D,Adgrl3:NM_001347371:exon11:c.C1754A:p.A585D,Adgrl3:NM_001359826:exon11:c.C1241A:p.A414D,Adgrl3:NM_001359833:exon11:c.C1754A:p.A585D,Adgrl3:NM_001347368:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359830:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359831:exon12:c.C1958A:p.A653D,Adgrl3:NM_001359832:exon12:c.C1943A:p.A648D,Adgrl3:NM_001359834:exon12:c.C1943A:p.A648D,Adgrl3:NM_001347367:exon13:c.C1958A:p.A653D,Adgrl3:NM_001347369:exon13:c.C1958A:p.A653D,Adgrl3:NM_001359828:exon13:c.C1958A:p.A653D,Adgrl3:NM_198702:exon13:c.C1958A:p.A653D"	5qD	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9967828	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	81660366	12A2p6	cell line	sgMsh2	81660366	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	0	0	NA	exonic	Adgrl3	synonymous SNV	"Adgrl3:NM_001359829:exon10:c.C1773T:p.D591D,Adgrl3:NM_001347371:exon11:c.C1788T:p.D596D,Adgrl3:NM_001359826:exon11:c.C1275T:p.D425D,Adgrl3:NM_001359833:exon11:c.C1788T:p.D596D,Adgrl3:NM_001347368:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359830:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359831:exon12:c.C1992T:p.D664D,Adgrl3:NM_001359832:exon12:c.C1977T:p.D659D,Adgrl3:NM_001359834:exon12:c.C1977T:p.D659D,Adgrl3:NM_001347367:exon13:c.C1992T:p.D664D,Adgrl3:NM_001347369:exon13:c.C1992T:p.D664D,Adgrl3:NM_001359828:exon13:c.C1992T:p.D664D,Adgrl3:NM_198702:exon13:c.C1992T:p.D664D"	5qD	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9957493	ACC	synonymous	NA	NA	NA	NA
M7_p20	chr5	86045467	12A2p6	cell line	sgMsh2	86045467	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	159	0	0	NA	exonic	Cenpc1	nonsynonymous SNV	"Cenpc1:NM_007683:exon7:c.G562A:p.A188T,Cenpc1:NM_001345902:exon8:c.G829A:p.A277T,Cenpc1:NM_001345903:exon8:c.G466A:p.A156T"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.7873887	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	86148870	12A2p6	cell line	sgMsh2	86148870	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	90	0	0	NA	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon11:c.A959T:p.E320V	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9991574	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	86428627	12A2p6	cell line	sgMsh2	86428627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	198	0	0	NA	exonic	Tmprss11a	nonsynonymous SNV	Tmprss11a:NM_001033233:exon5:c.A364G:p.S122G	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.770979015	2	0.7044909	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	86661610	12A2p6	cell line	sgMsh2	86661610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	208	0	0	NA	exonic	Tmprss11b	nonsynonymous SNV	Tmprss11b:NM_177024:exon9:c.A1022G:p.Y341C	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999989	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	86828035	12A2p6	cell line	sgMsh2	86828035	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	272	0	0	NA	exonic	Ythdc1	nonsynonymous SNV	"Ythdc1:NM_001347376:exon10:c.T1464A:p.H488Q,Ythdc1:NM_001347375:exon11:c.T1518A:p.H506Q,Ythdc1:NM_001359908:exon11:c.T1500A:p.H500Q,Ythdc1:NM_177680:exon11:c.T1518A:p.H506Q,Ythdc1:NM_001359907:exon12:c.T1554A:p.H518Q"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.252320405	3	1.00E-09	ATA	nonsynonymous	TCAT	8	TCATTCAT	NA
M7_p20	chr5	87474945	12A2p6	cell line	sgMsh2	87474945	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	114	0	0	NA	exonic	Ugt2a2	nonsynonymous SNV	Ugt2a2:NM_001024148:exon2:c.G163T:p.A55S	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997797	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	87579863	12A2p6	cell line	sgMsh2	87579863	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	390	0	0	NA	exonic	Sult1e1	nonsynonymous SNV	Sult1e1:NM_023135:exon6:c.C559T:p.R187C	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	1.04E-09	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	87671530	12A2p6	cell line	sgMsh2	87671530	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	217	0	0	NA	exonic	Csn1s1	synonymous SNV	"Csn1s1:NM_001286016:exon8:c.T219C:p.T73T,Csn1s1:NM_007784:exon8:c.T219C:p.T73T"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	87887345	12A2p6	cell line	sgMsh2	87887345	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	39	0	0	NA	exonic	Odam	nonsynonymous SNV	Odam:NM_027128:exon5:c.C167T:p.P56L	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	CCC	nonsynonymous	TCCCT	10	TCCCTTCCCT	NA
M7_p20	chr5	88463329	12A2p6	cell line	sgMsh2	88463329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	55	0	0	NA	exonic	Ambn	nonsynonymous SNV	"Ambn:NM_001303431:exon6:c.A412G:p.T138A,Ambn:NM_009664:exon6:c.A367G:p.T123A"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.719580414	1	0.5899335	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	88502641	12A2p6	cell line	sgMsh2	88502641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	75	0	0	NA	exonic	Enam	nonsynonymous SNV	Enam:NM_017468:exon10:c.A1783G:p.S595G	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9980527	AAG	nonsynonymous	GCAA	8	GCAAGCAA	NA
M7_p20	chr5	89582733	12A2p6	cell line	sgMsh2	89582733	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	177	0	0	NA	exonic	Npffr2	nonsynonymous SNV	Npffr2:NM_133192:exon4:c.T521C:p.I174T	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999935	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	209	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999989	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	201	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999983	AAC	synonymous	A	5	AAAAA	NA
M7_p20	chr5	92070423	12A2p6	cell line	sgMsh2	92070423	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	132	0	0	NA	exonic	G3bp2	nonsynonymous SNV	"G3bp2:NM_001080794:exon3:c.T111A:p.N37K,G3bp2:NM_001080795:exon3:c.T111A:p.N37K,G3bp2:NM_001080796:exon3:c.T111A:p.N37K,G3bp2:NM_001080797:exon3:c.T111A:p.N37K,G3bp2:NM_001359195:exon3:c.T111A:p.N37K,G3bp2:NM_001359196:exon3:c.T111A:p.N37K,G3bp2:NM_001359197:exon3:c.T111A:p.N37K,G3bp2:NM_011816:exon3:c.T111A:p.N37K"	5qE2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999195	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	92181489	12A2p6	cell line	sgMsh2	92181489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	102	0	0	NA	exonic	Uso1	nonsynonymous SNV	Uso1:NM_019490:exon12:c.T1235C:p.I412T	5qE2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995691	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	92933813	12A2p6	cell line	sgMsh2	92933813	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	75	0	0	NA	exonic	Shroom3	nonsynonymous SNV	Shroom3:NM_015756:exon4:c.A512G:p.Q171R	5qE2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9612564	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	93187747	12A2p6	cell line	sgMsh2	93187747	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	98	0	0	NA	exonic	Ccni	nonsynonymous SNV	Ccni:NM_017367:exon6:c.T531A:p.H177Q	5qE2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	99234545	12A2p6	cell line	sgMsh2	99234545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	115	0	0	NA	exonic	Rasgef1b	nonsynonymous SNV	"Rasgef1b:NM_145839:exon5:c.A585G:p.I195M,Rasgef1b:NM_181318:exon5:c.A582G:p.I194M"	5qE3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.696217414	2	0.09118899	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	100037641	12A2p6	cell line	sgMsh2	100037641	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	exonic	Hnrnpdl	nonsynonymous SNV	Hnrnpdl:NM_016690:exon3:c.A701G:p.K234R	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	CTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	26	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9706607	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	100533370	12A2p6	cell line	sgMsh2	100533370	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	216	0	0	NA	exonic	Cops4	nonsynonymous SNV	"Cops4:NM_001359203:exon4:c.A386C:p.N129T,Cops4:NM_012001:exon5:c.A539C:p.N180T,Cops4:NM_001359204:exon6:c.A386C:p.N129T"	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999911	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	100783064	12A2p6	cell line	sgMsh2	100783064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	91	0	0	NA	exonic	Helq	nonsynonymous SNV	Helq:NM_001081107:exon9:c.A1819G:p.T607A	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	100806887	12A2p6	cell line	sgMsh2	100806887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	41	0	0	NA	exonic	Abraxas1	nonsynonymous SNV	Abraxas1:NM_172405:exon8:c.A685G:p.I229V	5qE4	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9871049	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	102892466	12A2p6	cell line	sgMsh2	102892466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	90	0	0	NA	exonic	Arhgap24	nonsynonymous SNV	"Arhgap24:NM_001346585:exon6:c.A1277G:p.K426R,Arhgap24:NM_001286468:exon7:c.A1268G:p.K423R,Arhgap24:NM_146161:exon8:c.A1268G:p.K423R,Arhgap24:NM_029270:exon9:c.A1547G:p.K516R"	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9991574	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	103555045	12A2p6	cell line	sgMsh2	103555045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	137	0	0	NA	exonic	Ptpn13	nonsynonymous SNV	Ptpn13:NM_011204:exon24:c.G3876T:p.K1292N	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9974072	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	103842345	12A2p6	cell line	sgMsh2	103842345	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	33	0	0	NA	exonic	Aff1	synonymous SNV	"Aff1:NM_001080798:exon13:c.A2704C:p.R902R,Aff1:NM_133919:exon13:c.A2680C:p.R894R"	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9799748	AAG	synonymous	AGGCCA	12	AGGCCAAGGCCA	NA
M7_p20	chr5	104337342	12A2p6	cell line	sgMsh2	104337342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	78	0	0	NA	exonic	Mepe	nonsynonymous SNV	Mepe:NM_053172:exon3:c.A347C:p.D116A	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.700890014	2	0.6876318	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	105118429	12A2p6	cell line	sgMsh2	105118429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	247	0	0	NA	exonic	Gbp4	nonsynonymous SNV	"Gbp4:NM_001359080:exon10:c.T1337C:p.L446P,Gbp4:NM_001359081:exon10:c.T1337C:p.L446P,Gbp4:NM_001256005:exon11:c.T1745C:p.L582P,Gbp4:NM_001359082:exon11:c.T1337C:p.L446P,Gbp4:NM_008620:exon11:c.T1337C:p.L446P,Gbp4:NM_001359079:exon12:c.T1784C:p.L595P"	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.999981	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	107619891	12A2p6	cell line	sgMsh2	107619891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	75	0	0	NA	exonic	Rpap2	synonymous SNV	"Rpap2:NM_001163461:exon8:c.C594T:p.G198G,Rpap2:NM_001163462:exon8:c.C357T:p.G119G,Rpap2:NM_001289569:exon8:c.C363T:p.G121G,Rpap2:NM_001289570:exon8:c.C594T:p.G198G,Rpap2:NM_001359916:exon8:c.C567T:p.G189G,Rpap2:NM_001359917:exon8:c.C357T:p.G119G,Rpap2:NM_001359918:exon8:c.C357T:p.G119G,Rpap2:NM_144911:exon8:c.C594T:p.G198G"	5qE5	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9980527	GCG	synonymous	NA	NA	NA	NA
M7_p20	chr5	107720172	12A2p6	cell line	sgMsh2	107720172	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	185	0	0	NA	exonic	Gfi1	nonsynonymous SNV	"Gfi1:NM_010278:exon5:c.A1031G:p.Q344R,Gfi1:NM_001267621:exon6:c.A1229G:p.Q410R"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.775651615	2	0.6012882	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	108443571	12A2p6	cell line	sgMsh2	108443571	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	31	0	0	NA	exonic	Mfsd7a	nonsynonymous SNV	"Mfsd7a:NM_001359977:exon6:c.T440A:p.L147H,Mfsd7a:NM_172883:exon8:c.T1031A:p.L344H"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9776579	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	108604387	12A2p6	cell line	sgMsh2	108604387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	59	0	0	NA	exonic	Gak	nonsynonymous SNV	"Gak:NM_001359924:exon8:c.A521G:p.N174S,Gak:NM_001282052:exon9:c.A368G:p.N123S,Gak:NM_001282051:exon10:c.A521G:p.N174S,Gak:NM_001359922:exon10:c.A521G:p.N174S,Gak:NM_001359923:exon10:c.A521G:p.N174S,Gak:NM_153569:exon10:c.A1004G:p.N335S"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9952486	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	108649182	12A2p6	cell line	sgMsh2	108649182	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	86	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon22:c.C1961T:p.A654V,Dgkq:NM_199011:exon22:c.C2666T:p.A889V"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9940451	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	108680967	12A2p6	cell line	sgMsh2	108680967	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	104	0	0	NA	exonic	Idua	nonsynonymous SNV	"Idua:NM_172997:exon8:c.T935G:p.F312C,Idua:NM_008325:exon9:c.T1076G:p.F359C"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9996147	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	108797917	12A2p6	cell line	sgMsh2	108797917	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	739	0	0	NA	exonic	Vmn2r8	nonsynonymous SNV	Vmn2r8:NM_001104620:exon6:c.A1823T:p.K608M	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	109340546	12A2p6	cell line	sgMsh2	109340546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	290	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon3:c.T1284C:p.S428S,Vmn2r16:NM_001385189:exon3:c.T1284C:p.S428S"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.696217414	2	0.999865	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	109452832	12A2p6	cell line	sgMsh2	109452832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	526	0	0	NA	exonic	Vmn2r17	synonymous SNV	"Vmn2r17:NM_001104628:exon6:c.A1995G:p.T665T,Vmn2r17:NM_001385190:exon6:c.A1992G:p.T664T"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.868207	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	109452875	12A2p6	cell line	sgMsh2	109452875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	550	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon6:c.A2038G:p.T680A,Vmn2r17:NM_001385190:exon6:c.A2035G:p.T679A"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	110189662	12A2p6	cell line	sgMsh2	110189662	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.12	54	0	0	NA	exonic	Golga3	synonymous SNV	"Golga3:NM_001347389:exon7:c.A1335G:p.L445L,Golga3:NM_008146:exon7:c.A1215G:p.L405L"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.560712011	2	0.09491542	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	110303958	12A2p6	cell line	sgMsh2	110303958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	170	0	0	NA	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon23:c.A2665G:p.T889A	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9943952	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	110312095	12A2p6	cell line	sgMsh2	110312095	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	54	0	0	NA	exonic	Pole	nonsynonymous SNV	Pole:NM_011132:exon27:c.T3364G:p.F1122V	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.9914444	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	110655672	12A2p6	cell line	sgMsh2	110655672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	46	0	0	NA	exonic	Ddx51	nonsynonymous SNV	Ddx51:NM_027156:exon7:c.T1019C:p.L340P	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9902196	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	111085096	12A2p6	cell line	sgMsh2	111085096	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	41	0	0	NA	exonic	Ttc28	synonymous SNV	Ttc28:NM_001267622:exon3:c.G438C:p.G146G	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9285349	GGC	synonymous	GGCT	8	GGCTGGCT	NA
M7_p20	chr5	112246778	12A2p6	cell line	sgMsh2	112246778	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	39	0	0	NA	exonic	Cryba4	nonsynonymous SNV	"Cryba4:NM_001312884:exon5:c.T445C:p.Y149H,Cryba4:NM_021351:exon6:c.T484C:p.Y162H"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9856008	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	114446235	12A2p6	cell line	sgMsh2	114446235	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	102	0	0	NA	exonic	Mvk	nonsynonymous SNV	"Mvk:NM_001306205:exon3:c.A155G:p.N52S,Mvk:NM_023556:exon3:c.A155G:p.N52S"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9995691	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	114937417	12A2p6	cell line	sgMsh2	114937417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	137	0	0	NA	exonic	Oasl1	stoploss	"Oasl1:NM_001359946:exon5:c.A998T:p.X333L,Oasl1:NM_001359945:exon6:c.A1535T:p.X512L,Oasl1:NM_145209:exon7:c.A1535T:p.X512L"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999391	TAG	nonsynonymous	AGCT	8	AGCTAGCT	NA
M7_p20	chr5	115127330	12A2p6	cell line	sgMsh2	115127330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	136	0	0	NA	exonic	Unc119b	nonsynonymous SNV	Unc119b:NM_175352:exon3:c.T442C:p.F148L	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999356	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	115295713	12A2p6	cell line	sgMsh2	115295713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	211	0	0	NA	exonic	Coq5	nonsynonymous SNV	Coq5:NM_026504:exon6:c.T818C:p.V273A	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.999999	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	115341076	12A2p6	cell line	sgMsh2	115341076	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	13	0	0	NA	exonic	Gatc	nonsynonymous SNV	Gatc:NM_029645:exon1:c.A74T:p.N25I	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9410259	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	115587846	12A2p6	cell line	sgMsh2	115587846	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon17:c.T1670A:p.L557H	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	115640184	12A2p6	cell line	sgMsh2	115640184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	98	0	0	NA	exonic	Rab35	nonsynonymous SNV	Rab35:NM_198163:exon3:c.T208C:p.F70L	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	117555453	12A2p6	cell line	sgMsh2	117555453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	39	0	0	NA	exonic	Ksr2	nonsynonymous SNV	Ksr2:NM_001312914:exon4:c.G965A:p.R322H	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	118070476	12A2p6	cell line	sgMsh2	118070476	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	54	0	0	NA	exonic	Fbxw8	synonymous SNV	Fbxw8:NM_172721:exon9:c.C1411T:p.L471L	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.663509213	2	0.6316938	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr5	118755543	12A2p6	cell line	sgMsh2	118755543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	76	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon27:c.T5913C:p.A1971A,Med13l:NM_172424:exon27:c.T5886C:p.A1962A"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9981584	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	119883211	12A2p6	cell line	sgMsh2	119883211	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.2	67	0	0	NA	exonic	Tbx5	synonymous SNV	Tbx5:NM_011537:exon9:c.C1281T:p.S427S	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9883273	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr5	120116639	12A2p6	cell line	sgMsh2	120116639	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.14	38	0	0	NA	exonic	Rbm19	nonsynonymous SNV	Rbm19:NM_028762:exon1:c.T26C:p.L9P	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.654164013	1	0.000559787	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	121384041	12A2p6	cell line	sgMsh2	121384041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	160	0	0	NA	exonic	Trafd1	nonsynonymous SNV	"Trafd1:NM_001163470:exon2:c.T46C:p.C16R,Trafd1:NM_001359947:exon2:c.T46C:p.C16R,Trafd1:NM_172275:exon2:c.T46C:p.C16R"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	121430672	12A2p6	cell line	sgMsh2	121430672	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	249	0	0	NA	exonic	Naa25	nonsynonymous SNV	Naa25:NM_172722:exon16:c.T1796A:p.F599Y	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.275683405	3	1.04E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	121434925	12A2p6	cell line	sgMsh2	121434925	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	145	0	0	NA	exonic	Naa25	synonymous SNV	Naa25:NM_172722:exon18:c.T2106C:p.S702S	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999611	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr5	121493708	12A2p6	cell line	sgMsh2	121493708	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	97	0	0	NA	exonic	Tmem116	synonymous SNV	"Tmem116:NM_001161626:exon8:c.A642G:p.A214A,Tmem116:NM_029912:exon8:c.A282G:p.A94A,Tmem116:NM_001161627:exon9:c.A747G:p.A249A"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	121501868	12A2p6	cell line	sgMsh2	121501868	A	G	SNV	Mutect2;MuSe;Vardict	3	0.124	111	0	0	NA	exonic	Adam1b	synonymous SNV	Adam1b:NM_172125:exon1:c.T1113C:p.S371S	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.579402411	2	0.9978566	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	121610131	12A2p6	cell line	sgMsh2	121610131	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	151	0	0	NA	exonic	Acad12	nonsynonymous SNV	Acad12:NM_178799:exon3:c.A223C:p.K75Q	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999722	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	121817841	12A2p6	cell line	sgMsh2	121817841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	56	0	0	NA	exonic	Sh2b3	nonsynonymous SNV	"Sh2b3:NM_001306128:exon8:c.G1547A:p.R516Q,Sh2b3:NM_008507:exon8:c.G1577A:p.R526Q,Sh2b3:NM_001306126:exon9:c.G1577A:p.R526Q,Sh2b3:NM_001306127:exon9:c.G1577A:p.R526Q"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9943856	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	122102770	12A2p6	cell line	sgMsh2	122102770	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	89	0	0	NA	exonic	Myl2	synonymous SNV	"Myl2:NM_001384326:exon3:c.A168G:p.L56L,Myl2:NM_010861:exon3:c.A168G:p.L56L,Myl2:NM_001384330:exon5:c.A111G:p.L37L,Myl2:NM_001384327:exon6:c.A111G:p.L37L,Myl2:NM_001384331:exon6:c.A111G:p.L37L,Myl2:NM_001384329:exon7:c.A111G:p.L37L,Myl2:NM_001384328:exon8:c.A111G:p.L37L"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.999109	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	122334415	12A2p6	cell line	sgMsh2	122334415	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	171	0	0	NA	exonic	Rad9b	nonsynonymous SNV	"Rad9b:NM_001382853:exon7:c.C682G:p.L228V,Rad9b:NM_144912:exon7:c.C682G:p.L228V"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999909	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	122461760	12A2p6	cell line	sgMsh2	122461760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	150	0	0	NA	exonic	Atp2a2	nonsynonymous SNV	"Atp2a2:NM_001110140:exon13:c.A1567G:p.R523G,Atp2a2:NM_009722:exon13:c.A1567G:p.R523G"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999706	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	122559719	12A2p6	cell line	sgMsh2	122559719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	223	0	0	NA	exonic	Ift81	nonsynonymous SNV	"Ift81:NM_001358919:exon15:c.A1475G:p.H492R,Ift81:NM_001358917:exon16:c.A1694G:p.H565R,Ift81:NM_001358918:exon16:c.A1526G:p.H509R,Ift81:NM_009879:exon16:c.A1694G:p.H565R"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	123029094	12A2p6	cell line	sgMsh2	123029094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	49	0	0	NA	exonic	Orai1	nonsynonymous SNV	Orai1:NM_175423:exon2:c.A329G:p.Q110R	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9855056	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	123182676	12A2p6	cell line	sgMsh2	123182676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	115	0	0	NA	exonic	Hpd	nonsynonymous SNV	Hpd:NM_008277:exon1:c.A1C:p.M1L	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997917	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	123646269	12A2p6	cell line	sgMsh2	123646269	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	55	0	0	NA	exonic	Clip1	synonymous SNV	"Clip1:NM_001291229:exon5:c.T816C:p.A272A,Clip1:NM_001347468:exon5:c.T816C:p.A272A,Clip1:NM_001359220:exon5:c.T816C:p.A272A,Clip1:NM_001359221:exon5:c.T816C:p.A272A,Clip1:NM_001359222:exon5:c.T816C:p.A272A,Clip1:NM_001359223:exon5:c.T816C:p.A272A,Clip1:NM_001359224:exon5:c.T816C:p.A272A,Clip1:NM_019765:exon5:c.T816C:p.A272A"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	123729278	12A2p6	cell line	sgMsh2	123729278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	229	0	0	NA	exonic	Rsrc2	nonsynonymous SNV	"Rsrc2:NM_001005525:exon10:c.A1204G:p.N402D,Rsrc2:NM_001359864:exon10:c.A1201G:p.N401D,Rsrc2:NM_025438:exon11:c.A1030G:p.N344D,Rsrc2:NM_001359861:exon12:c.A1030G:p.N344D,Rsrc2:NM_001359866:exon12:c.A1027G:p.N343D,Rsrc2:NM_001359860:exon13:c.A1030G:p.N344D,Rsrc2:NM_001359865:exon13:c.A1027G:p.N343D"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	71	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9975657	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	123802402	12A2p6	cell line	sgMsh2	123802402	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	42	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon48:c.G5062A:p.A1688T	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9877977	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	124123998	12A2p6	cell line	sgMsh2	124123998	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	35	0	0	NA	exonic	Pitpnm2	nonsynonymous SNV	"Pitpnm2:NM_001289472:exon18:c.C2779T:p.H927Y,Pitpnm2:NM_011256:exon18:c.C2617T:p.H873Y"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9820559	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	124410263	12A2p6	cell line	sgMsh2	124410263	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	163	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon4:c.T354G:p.T118T,Sbno1:NM_001359978:exon4:c.T354G:p.T118T,Sbno1:NM_001359979:exon4:c.T351G:p.T117T"	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9678617	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	124646720	12A2p6	cell line	sgMsh2	124646720	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	66	0	0	NA	exonic	Atp6v0a2	nonsynonymous SNV	Atp6v0a2:NM_011596:exon9:c.G942C:p.M314I	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9967828	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	124832622	12A2p6	cell line	sgMsh2	124832622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	140	0	0	NA	exonic	Dnah10	nonsynonymous SNV	Dnah10:NM_019536:exon77:c.C13475T:p.A4492V	5qF	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9992893	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	125032064	12A2p6	cell line	sgMsh2	125032064	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.103	44	0	0	NA	exonic	Ncor2	synonymous SNV	"Ncor2:NM_001253905:exon28:c.A3918G:p.P1306P,Ncor2:NM_011424:exon32:c.A4572G:p.P1524P,Ncor2:NM_001253904:exon33:c.A4155G:p.P1385P"	5qG1.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.48127781	2	0.8733277	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	125048197	12A2p6	cell line	sgMsh2	125048197	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	19	0	0	NA	exonic	Ncor2	synonymous SNV	"Ncor2:NM_001253905:exon17:c.G1890A:p.E630E,Ncor2:NM_001253904:exon21:c.G2022A:p.E674E,Ncor2:NM_011424:exon21:c.G2547A:p.E849E"	5qG1.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9571948	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr5	125084963	12A2p6	cell line	sgMsh2	125084963	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	43	0	0	NA	exonic	Ncor2	nonsynonymous SNV	"Ncor2:NM_001253905:exon8:c.A589T:p.M197L,Ncor2:NM_001253904:exon12:c.A721T:p.M241L,Ncor2:NM_011424:exon12:c.A1246T:p.M416L"	5qG1.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8636625	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	125622767	12A2p6	cell line	sgMsh2	125622767	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	116	0	0	NA	exonic	Tmem132b	nonsynonymous SNV	Tmem132b:NM_001190352:exon2:c.T368A:p.L123H	5qG1.1	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.710235214	2	0.8624071	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	127359899	12A2p6	cell line	sgMsh2	127359899	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	140	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon2:c.C451G:p.H151D	5qG1.2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999485	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	127650704	12A2p6	cell line	sgMsh2	127650704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	52	0	0	NA	exonic	Glt1d1	nonsynonymous SNV	Glt1d1:NM_177005:exon3:c.T239C:p.V80A	5qG1.2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.992988	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	128601265	12A2p6	cell line	sgMsh2	128601265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	16	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A48G:p.I16M	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9497451	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	128601785	12A2p6	cell line	sgMsh2	128601785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	34	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.C568T:p.R190C	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	128601801	12A2p6	cell line	sgMsh2	128601801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	39	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.A584G:p.N195S	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9305566	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	128602175	12A2p6	cell line	sgMsh2	128602175	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	exonic	Fzd10	nonsynonymous SNV	Fzd10:NM_175284:exon1:c.T958G:p.F320V	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9540469	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	129569706	12A2p6	cell line	sgMsh2	129569706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	28	0	0	NA	exonic	Sfswap	nonsynonymous SNV	"Sfswap:NM_001359952:exon16:c.A2213G:p.Q738R,Sfswap:NM_001378917:exon16:c.A2507G:p.Q836R,Sfswap:NM_172276:exon16:c.A2591G:p.Q864R,Sfswap:NM_001378915:exon17:c.A2744G:p.Q915R,Sfswap:NM_001378916:exon17:c.A2660G:p.Q887R"	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9736839	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	129770720	12A2p6	cell line	sgMsh2	129770720	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	49	0	0	NA	exonic	Psph	nonsynonymous SNV	Psph:NM_133900:exon5:c.G161A:p.G54E	5qG1.3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9917177	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	130877695	12A2p6	cell line	sgMsh2	130877695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	41	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon10:c.A1634G:p.K545R	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9871049	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	131086045	12A2p6	cell line	sgMsh2	131086045	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	64	0	0	NA	exonic	Galnt17	nonsynonymous SNV	Galnt17:NM_145218:exon4:c.T616C:p.Y206H	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.663509213	2	0.734629	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134135628	12A2p6	cell line	sgMsh2	134135628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	62	0	0	NA	exonic	Castor2	nonsynonymous SNV	Castor2:NM_030719:exon4:c.T427C:p.F143L	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	114	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997797	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134243910	12A2p6	cell line	sgMsh2	134243910	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	52	0	0	NA	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080749:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359066:exon25:c.A2347C:p.S783R,Gtf2i:NM_001359067:exon25:c.A2347C:p.S783R,Gtf2i:NM_001080747:exon26:c.A2404C:p.S802R,Gtf2i:NM_001359063:exon26:c.A2410C:p.S804R,Gtf2i:NM_001359065:exon26:c.A2404C:p.S802R,Gtf2i:NM_010365:exon26:c.A2410C:p.S804R,Gtf2i:NM_001080746:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359062:exon27:c.A2467C:p.S823R,Gtf2i:NM_001359064:exon27:c.A2410C:p.S804R"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.992988	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134263759	12A2p6	cell line	sgMsh2	134263759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	59	0	0	NA	exonic	Gtf2i	nonsynonymous SNV	"Gtf2i:NM_001080748:exon13:c.T1010G:p.I337S,Gtf2i:NM_001080749:exon13:c.T1010G:p.I337S,Gtf2i:NM_001359066:exon13:c.T1010G:p.I337S,Gtf2i:NM_001359067:exon13:c.T1010G:p.I337S,Gtf2i:NM_001080747:exon14:c.T1067G:p.I356S,Gtf2i:NM_001359063:exon14:c.T1073G:p.I358S,Gtf2i:NM_001359065:exon14:c.T1067G:p.I356S,Gtf2i:NM_010365:exon14:c.T1073G:p.I358S,Gtf2i:NM_001080746:exon15:c.T1130G:p.I377S,Gtf2i:NM_001359062:exon15:c.T1130G:p.I377S,Gtf2i:NM_001359064:exon15:c.T1073G:p.I358S"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9952486	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134726498	12A2p6	cell line	sgMsh2	134726498	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	53	0	0	NA	exonic	Eln	nonsynonymous SNV	Eln:NM_007925:exon11:c.A700G:p.T234A	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9933668	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	134915019	12A2p6	cell line	sgMsh2	134915019	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	164	0	0	NA	exonic	Cldn13	nonsynonymous SNV	Cldn13:NM_020504:exon1:c.T311C:p.I104T	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999866	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	135064529	12A2p6	cell line	sgMsh2	135064529	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.327	38	0	0	NA	exonic	Bud23;Dnajc30	frameshift insertion	"Bud23:NM_001363325:exon1:c.14dupA:p.T6Dfs*6,Dnajc30:NM_025362:exon1:c.280dupT:p.L94Ffs*10"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TCT	frameshift	NA	NA	NA	1
M7_p20	chr5	135121526	12A2p6	cell line	sgMsh2	135121526	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.601	45	0	0	NA	exonic	Mlxipl	nonsynonymous SNV	Mlxipl:NM_021455:exon3:c.C421A:p.P141T	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9896629	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	135217467	12A2p6	cell line	sgMsh2	135217467	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	73	0	0	NA	exonic	Baz1b	nonsynonymous SNV	Baz1b:NM_011714:exon7:c.A1769C:p.N590T	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9978227	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	135440145	12A2p6	cell line	sgMsh2	135440145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	84	0	0	NA	exonic	Hip1	synonymous SNV	"Hip1:NM_001382848:exon11:c.A795G:p.L265L,Hip1:NM_146001:exon11:c.A897G:p.L299L"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9988219	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	135734871	12A2p6	cell line	sgMsh2	135734871	T	G	SNV	Mutect2;Strelka2;MuSe	3	0.25	103	0	0	NA	exonic	Por	nonsynonymous SNV	Por:NM_008898:exon16:c.T1951G:p.F651V	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995926	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	135734873	12A2p6	cell line	sgMsh2	135734873	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.25	103	0	0	NA	exonic	Por	synonymous SNV	Por:NM_008898:exon16:c.T1953C:p.F651F	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995926	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	141	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999513	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	136064125	12A2p6	cell line	sgMsh2	136064125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	88	0	0	NA	exonic	Upk3bl	nonsynonymous SNV	"Upk3bl:NM_001359361:exon6:c.A704G:p.Y235C,Upk3bl:NM_027158:exon6:c.A707G:p.Y236C"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990578	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	136091264	12A2p6	cell line	sgMsh2	136091264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	35	0	0	NA	exonic	Rasa4	nonsynonymous SNV	"Rasa4:NM_001039103:exon3:c.T193C:p.F65L,Rasa4:NM_133914:exon3:c.T193C:p.F65L"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9820559	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	136224301	12A2p6	cell line	sgMsh2	136224301	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	53	0	0	NA	exonic	Sh2b2	nonsynonymous SNV	"Sh2b2:NM_001302938:exon6:c.A1016T:p.E339V,Sh2b2:NM_001302939:exon6:c.A1016T:p.E339V,Sh2b2:NM_018825:exon6:c.A1016T:p.E339V"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9933668	CTC	nonsynonymous	GTC	9	GTCGTCGTC	NA
M7_p20	chr5	137297937	12A2p6	cell line	sgMsh2	137297937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	58	0	0	NA	exonic	Srrt	synonymous SNV	"Srrt:NM_001109909:exon13:c.T1506C:p.R502R,Srrt:NM_001109910:exon13:c.T1506C:p.R502R,Srrt:NM_001359602:exon13:c.T1506C:p.R502R,Srrt:NM_031405:exon13:c.T1506C:p.R502R"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr5	137445368	12A2p6	cell line	sgMsh2	137445368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	107	0	0	NA	exonic	Zan	nonsynonymous SNV	Zan:NM_011741:exon27:c.A5666G:p.D1889G	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	137555077	12A2p6	cell line	sgMsh2	137555077	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	99	0	0	NA	exonic	Actl6b	nonsynonymous SNV	Actl6b:NM_031404:exon4:c.T350C:p.V117A	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	137857515	12A2p6	cell line	sgMsh2	137857515	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	120	0	0	NA	exonic	Pilrb1	frameshift deletion	Pilrb1:NM_133209:exon2:c.113delA:p.N38Mfs*36	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr5	138183578	12A2p6	cell line	sgMsh2	138183578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	40	0	0	NA	exonic	Taf6	synonymous SNV	"Taf6:NM_001356600:exon4:c.C387T:p.V129V,Taf6:NM_001356601:exon4:c.C387T:p.V129V,Taf6:NM_001356602:exon4:c.C387T:p.V129V,Taf6:NM_009315:exon4:c.C387T:p.V129V"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9863733	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr5	138646905	12A2p6	cell line	sgMsh2	138646905	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	58	0	0	NA	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1051G:p.T351A	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	138647722	12A2p6	cell line	sgMsh2	138647722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	100	0	0	NA	exonic	A430033K04Rik	nonsynonymous SNV	A430033K04Rik:NM_183025:exon4:c.A1868G:p.Y623C	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.9848802	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	138755649	12A2p6	cell line	sgMsh2	138755649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	30	0	0	NA	exonic	Fam20c	nonsynonymous SNV	Fam20c:NM_030565:exon1:c.T14C:p.L5P	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9764031	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139152877	12A2p6	cell line	sgMsh2	139152877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	99	0	0	NA	exonic	Dnaaf5	nonsynonymous SNV	Dnaaf5:NM_001081265:exon3:c.T812C:p.L271P	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	152	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9996344	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139235573	12A2p6	cell line	sgMsh2	139235573	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	115	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon9:c.C1042T:p.H348Y,Sun1:NM_001256117:exon11:c.C1141T:p.H381Y,Sun1:NM_001359496:exon12:c.C1207T:p.H403Y,Sun1:NM_001256115:exon13:c.C1399T:p.H467Y,Sun1:NM_001256116:exon13:c.C1318T:p.H440Y,Sun1:NM_001359494:exon13:c.C1318T:p.H440Y,Sun1:NM_024451:exon14:c.C1510T:p.H504Y"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.48595041	2	0.9939387	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139392809	12A2p6	cell line	sgMsh2	139392809	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	147	0	0	NA	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T365C:p.L122P,Gpr146:NM_001362206:exon2:c.T365C:p.L122P,Gpr146:NM_030258:exon2:c.T365C:p.L122P"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9802979	CTG	nonsynonymous	CACTG	11	CACTGCACTGC	NA
M7_p20	chr5	139392815	12A2p6	cell line	sgMsh2	139392815	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	148	0	0	NA	exonic	Gpr146	nonsynonymous SNV	"Gpr146:NM_001038703:exon2:c.T371G:p.L124R,Gpr146:NM_001362206:exon2:c.T371G:p.L124R,Gpr146:NM_030258:exon2:c.T371G:p.L124R"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9995734	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139806938	12A2p6	cell line	sgMsh2	139806938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	84	0	0	NA	exonic	Tmem184a	nonsynonymous SNV	"Tmem184a:NM_144914:exon6:c.A790G:p.I264V,Tmem184a:NM_001161548:exon7:c.A862G:p.I288V"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	139813029	12A2p6	cell line	sgMsh2	139813030	CT	GC	DBS	Mutect2;Vardict	2	0.291	32	0	0	NA	exonic	Tmem184a	nonframeshift substitution	"Tmem184a:NM_144914:exon1:c.163_164GC:p.S55A,Tmem184a:NM_001161548:exon2:c.235_236GC:p.S79A"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	140665374	12A2p6	cell line	sgMsh2	140665374	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	67	0	0	NA	exonic	Iqce	nonsynonymous SNV	"Iqce:NM_001347517:exon23:c.C2278T:p.P760S,Iqce:NM_028833:exon23:c.C2329T:p.P777S"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9969573	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	140718582	12A2p6	cell line	sgMsh2	140718582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	22	0	0	NA	exonic	Brat1	synonymous SNV	"Brat1:NM_001276287:exon14:c.A2589G:p.E863E,Brat1:NM_181066:exon14:c.A2454G:p.E818E"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9635712	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr5	141953112	12A2p6	cell line	sgMsh2	141953112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	35	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon9:c.T1289C:p.L430S	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9820559	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	142161926	12A2p6	cell line	sgMsh2	142161926	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	72	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon37:c.A5312G:p.K1771R	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9976978	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	142188130	12A2p6	cell line	sgMsh2	142188130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	69	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon42:c.A6052G:p.K2018E	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	142451467	12A2p6	cell line	sgMsh2	142451467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	88	0	0	NA	exonic	Foxk1	nonsynonymous SNV	Foxk1:NM_199068:exon5:c.A1037G:p.N346S	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9990578	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	142472335	12A2p6	cell line	sgMsh2	142472335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	69	0	0	NA	exonic	Ap5z1	nonsynonymous SNV	Ap5z1:NM_172725:exon10:c.A1262C:p.D421A	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9972784	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	143202035	12A2p6	cell line	sgMsh2	143202035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	99	0	0	NA	exonic	Spdye4b	nonsynonymous SNV	"Spdye4b:NM_001384193:exon6:c.T473C:p.M158T,Spdye4b:NM_177880:exon6:c.T443C:p.M148T"	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	ATG	nonsynonymous	GGA	9	GGAGGAGGA	NA
M7_p20	chr5	143254581	12A2p6	cell line	sgMsh2	143254581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	34	0	0	NA	exonic	Zfp316	nonsynonymous SNV	Zfp316:NM_017467:exon7:c.A1682G:p.D561G	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	144001449	12A2p6	cell line	sgMsh2	144001449	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	139	0	0	NA	exonic	Ccz1	synonymous SNV	Ccz1:NM_177682:exon8:c.A702T:p.L234L	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999456	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr5	144834242	12A2p6	cell line	sgMsh2	144834242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	193	0	0	NA	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon55:c.A8393G:p.Y2798C	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999973	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	144857455	12A2p6	cell line	sgMsh2	144857455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	148	0	0	NA	exonic	Trrap	nonsynonymous SNV	Trrap:NM_001081362:exon70:c.A11135G:p.N3712S	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999671	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	145044767	12A2p6	cell line	sgMsh2	145044767	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	105	0	0	NA	exonic	1700018F24Rik	frameshift deletion	1700018F24Rik:NM_027069:exon4:c.411delT:p.F139Lfs*8	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chr5	145187147	12A2p6	cell line	sgMsh2	145187147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	107	0	0	NA	exonic	Atp5j2	nonsynonymous SNV	Atp5j2:NM_020582:exon2:c.A100G:p.I34V	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.710235214	2	0.8226429	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	145243604	12A2p6	cell line	sgMsh2	145243604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	48	0	0	NA	exonic	Zfp655	synonymous SNV	Zfp655:NM_028298:exon4:c.T271C:p.L91L	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9912455	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr5	145855079	12A2p6	cell line	sgMsh2	145855079	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	358	0	0	NA	exonic	Cyp3a11	nonsynonymous SNV	Cyp3a11:NM_007818:exon13:c.A1503G:p.I501M	5qG2	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.635473613	2	1.36E-08	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	146834249	12A2p6	cell line	sgMsh2	146834249	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	270	0	0	NA	exonic	Rpl21	frameshift deletion	Rpl21:NM_019647:exon2:c.54delT:p.F19Lfs*21	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.939192619	NA	NA	CTT	frameshift	NA	NA	NA	-1
M7_p20	chr5	146955155	12A2p6	cell line	sgMsh2	146955155	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	111	0	0	NA	exonic	Gtf3a	nonsynonymous SNV	Gtf3a:NM_025652:exon8:c.A899C:p.D300A	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9984848	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	147536534	12A2p6	cell line	sgMsh2	147536534	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	157	0	0	NA	exonic	Pan3	nonsynonymous SNV	"Pan3:NM_028291:exon14:c.T2021C:p.L674P,Pan3:NM_001359433:exon15:c.T1247C:p.L416P"	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9963803	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	149453408	12A2p6	cell line	sgMsh2	149453408	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	179	0	0	NA	exonic	Tex26	synonymous SNV	"Tex26:NM_001310765:exon2:c.A6G:p.V2V,Tex26:NM_001310763:exon3:c.A258G:p.V86V,Tex26:NM_001310764:exon3:c.A6G:p.V2V,Tex26:NM_029464:exon3:c.A261G:p.V87V"	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999942	TAA	synonymous	A	5	AAAAA	NA
M7_p20	chr5	150378979	12A2p6	cell line	sgMsh2	150378979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	57	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon15:c.A1650G:p.I550M	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	2	1	1	0.9946893	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	150541200	12A2p6	cell line	sgMsh2	150541200	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	178	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon11:c.A4428C:p.Q1476H,Brca2:NM_009765:exon11:c.A4428C:p.Q1476H"	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999939	AAT	nonsynonymous	GTCA	8	GTCAGTCA	NA
M7_p20	chr5	150554424	12A2p6	cell line	sgMsh2	150554424	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	85	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon18:c.A8009G:p.Q2670R,Brca2:NM_009765:exon18:c.A8009G:p.Q2670R"	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.705562614	2	7.79E-08	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	150569239	12A2p6	cell line	sgMsh2	150569239	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.099	71	0	0	NA	exonic	Brca2	nonsynonymous SNV	"Brca2:NM_001081001:exon27:c.A9718G:p.S3240G,Brca2:NM_009765:exon27:c.A9718G:p.S3240G"	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	0.462587409	2	0.9315373	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr5	150988521	12A2p6	cell line	sgMsh2	150988521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	128	0	0	NA	exonic	Kl	synonymous SNV	Kl:NM_013823:exon4:c.T1734C:p.S578S	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr5	151645654	12A2p6	cell line	sgMsh2	151645654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	91	0	0	NA	exonic	Rfc3	nonsynonymous SNV	Rfc3:NM_027009:exon5:c.A437T:p.H146L	5qG3	chr5-33026259-151647482	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	3532184	12A2p6	cell line	sgMsh2	3532184	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	215	0	0	NA	exonic	Vps50	nonsynonymous SNV	"Vps50:NM_001167750:exon10:c.C686A:p.T229N,Vps50:NM_001167751:exon10:c.C686A:p.T229N,Vps50:NM_024260:exon10:c.C686A:p.T229N"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.962555619	1	0.9999907	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	4532747	12A2p6	cell line	sgMsh2	4532747	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	350	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon39:c.A2371G:p.M791V	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.635473613	2	2.09E-08	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	4539480	12A2p6	cell line	sgMsh2	4539480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	102	0	0	NA	exonic	Col1a2	synonymous SNV	Col1a2:NM_007743:exon51:c.A3747G:p.E1249E	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.738270815	2	0.6189415	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	4905506	12A2p6	cell line	sgMsh2	4905506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	100	0	0	NA	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon2:c.G60A:p.R20R,Ppp1r9a:NM_181595:exon2:c.G60A:p.R20R"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.630801013	2	0.9770283	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr6	5156157	12A2p6	cell line	sgMsh2	5156157	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	152	0	0	NA	exonic	Ppp1r9a	nonsynonymous SNV	"Ppp1r9a:NM_001363809:exon13:c.A2797G:p.T933A,Ppp1r9a:NM_181595:exon13:c.A2797G:p.T933A"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.780324215	1	0.5612678	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	6113943	12A2p6	cell line	sgMsh2	6113943	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	104	0	0	NA	exonic	Slc25a13	synonymous SNV	"Slc25a13:NM_001177572:exon9:c.A928C:p.R310R,Slc25a13:NM_015829:exon9:c.A928C:p.R310R"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.738270815	2	0.6305711	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr6	6152512	12A2p6	cell line	sgMsh2	6152512	A	-	Deletion	Mutect2;Vardict	2	0.169	50	0	0	NA	exonic	Slc25a13	frameshift deletion	"Slc25a13:NM_001177572:exon4:c.224delT:p.F75Sfs*4,Slc25a13:NM_015829:exon4:c.224delT:p.F75Sfs*4"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.789669416	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr6	6878375	12A2p6	cell line	sgMsh2	6878375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	33	0	0	NA	exonic	Dlx5	synonymous SNV	Dlx5:NM_010056:exon3:c.A654G:p.P218P	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9799748	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	6878469	12A2p6	cell line	sgMsh2	6878469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	34	0	0	NA	exonic	Dlx5	nonsynonymous SNV	Dlx5:NM_010056:exon3:c.A560G:p.N187S	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9810433	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	7863979	12A2p6	cell line	sgMsh2	7863979	T	-	Deletion	Strelka2;Vardict	2	0.2366	93	0	0	NA	exonic	C1galt1	frameshift deletion	C1galt1:NM_052993:exon2:c.58delT:p.L22Yfs*5	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7_p20	chr6	8591621	12A2p6	cell line	sgMsh2	8591621	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	129	0	0	NA	exonic	Glcci1	synonymous SNV	"Glcci1:NM_001286728:exon7:c.G666A:p.E222E,Glcci1:NM_001286729:exon7:c.G663A:p.E221E,Glcci1:NM_133236:exon7:c.G1227A:p.E409E"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.387825808	3	0.9247405	AGC	synonymous	C	5	CCCCC	NA
M7_p20	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1762	227	0	0	NA	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.823312136	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7_p20	chr6	12555638	12A2p6	cell line	sgMsh2	12555638	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	95	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon2:c.T246C:p.T82T	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9993628	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	13185194	12A2p6	cell line	sgMsh2	13185194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	133	0	0	NA	exonic	Vwde	nonsynonymous SNV	Vwde:NM_001368871:exon13:c.T2768C:p.I923T	6qA1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999239	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	17097518	12A2p6	cell line	sgMsh2	17097518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	152	0	0	NA	exonic	Tes	synonymous SNV	Tes:NM_207176:exon4:c.T624C:p.P208P	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.953210419	1	0.9997641	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	232	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.616783212	2	0.9999959	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	218	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.532676411	2	0.9999996	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	18226001	12A2p6	cell line	sgMsh2	18226001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	196	0	0	NA	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon8:c.T947C:p.F316S	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999978	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	18267739	12A2p6	cell line	sgMsh2	18267739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	163	0	0	NA	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon14:c.G1786A:p.A596T	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	1	0.9996176	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	18282507	12A2p6	cell line	sgMsh2	18282507	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	153	0	0	NA	exonic	Cftr	nonsynonymous SNV	Cftr:NM_021050:exon20:c.T3205A:p.F1069I	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.864431017	1	0.9852789	CTT	nonsynonymous	ACTT	8	ACTTACTT	NA
M7_p20	chr6	18397578	12A2p6	cell line	sgMsh2	18397578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	228	0	0	NA	exonic	Cttnbp2	synonymous SNV	Cttnbp2:NM_080285:exon13:c.C3342T:p.F1114F	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.897139218	1	0.9994804	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	464	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9999995	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.796	281	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	4	1	1	2.04E-08	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M7_p20	chr6	22237622	12A2p6	cell line	sgMsh2	22237622	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	157	0	0	NA	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon21:c.A2736T:p.E912D	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999801	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	22254572	12A2p6	cell line	sgMsh2	22254572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	264	0	0	NA	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon22:c.A2963G:p.H988R	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	5.11E-08	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	23599510	12A2p6	cell line	sgMsh2	23599510	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	125	0	0	NA	exonic	Cadps2	synonymous SNV	"Cadps2:NM_001252105:exon4:c.C796T:p.L266L,Cadps2:NM_001252106:exon4:c.C796T:p.L266L,Cadps2:NM_001252107:exon4:c.C796T:p.L266L,Cadps2:NM_001252108:exon4:c.C796T:p.L266L,Cadps2:NM_001252109:exon4:c.C796T:p.L266L,Cadps2:NM_001252110:exon4:c.C796T:p.L266L,Cadps2:NM_153163:exon4:c.C796T:p.L266L"	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.873776217	1	0.9847666	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr6	23969343	12A2p6	cell line	sgMsh2	23969343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	242	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T718C:p.S240P	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	23970059	12A2p6	cell line	sgMsh2	23970059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	190	0	0	NA	exonic	Tas2r118	nonsynonymous SNV	Tas2r118:NM_207022:exon1:c.T2C:p.M1T	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999969	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	24168044	12A2p6	cell line	sgMsh2	24168044	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	93	0	0	NA	exonic	Slc13a1	synonymous SNV	Slc13a1:NM_019481:exon1:c.T21C:p.A7A	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9992875	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	24450823	12A2p6	cell line	sgMsh2	24450823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	60	0	0	NA	exonic	Iqub	synonymous SNV	Iqub:NM_172535:exon11:c.T1776C:p.D592D	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.911157018	1	0.9771636	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	27363247	12A2p6	cell line	sgMsh2	27363247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	212	0	0	NA	exonic	Grm8	synonymous SNV	"Grm8:NM_001311072:exon8:c.T2268C:p.S756S,Grm8:NM_001361125:exon9:c.T2268C:p.S756S,Grm8:NM_008174:exon9:c.T2268C:p.S756S"	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.836395417	1	0.9609391	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	27363252	12A2p6	cell line	sgMsh2	27363252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	208	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.T2263C:p.Y755H,Grm8:NM_001361125:exon9:c.T2263C:p.Y755H,Grm8:NM_008174:exon9:c.T2263C:p.Y755H"	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.836395417	1	0.9601109	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	27363389	12A2p6	cell line	sgMsh2	27363389	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	241	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon8:c.G2126A:p.G709E,Grm8:NM_001361125:exon9:c.G2126A:p.G709E,Grm8:NM_008174:exon9:c.G2126A:p.G709E"	6qA3.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999998	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	27618514	12A2p6	cell line	sgMsh2	27618514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	142	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon6:c.T1328C:p.L443P,Grm8:NM_001361125:exon7:c.T1328C:p.L443P,Grm8:NM_008174:exon7:c.T1328C:p.L443P"	6qA3.2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.999954	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	28724971	12A2p6	cell line	sgMsh2	28724971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	183	0	0	NA	exonic	Snd1	nonsynonymous SNV	Snd1:NM_019776:exon14:c.A1517G:p.D506G	6qA3.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.859758417	1	0.987422	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	29450863	12A2p6	cell line	sgMsh2	29450863	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	171	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon26:c.T4509C:p.T1503T,Flnc:NM_001311074:exon26:c.T4509C:p.T1503T"	6qA3.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.887794018	1	0.9966313	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	29565812	12A2p6	cell line	sgMsh2	29565812	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	49	0	0	NA	exonic	Tnpo3	synonymous SNV	"Tnpo3:NM_001347079:exon12:c.T1542C:p.P514P,Tnpo3:NM_177296:exon12:c.T1542C:p.P514P,Tnpo3:NM_001361290:exon13:c.T1344C:p.P448P"	6qA3.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.565384611	2	0.8531009	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	30658390	12A2p6	cell line	sgMsh2	30658390	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.02	472	0	0	NA	exonic	Cep41	synonymous SNV	Cep41:NM_031998:exon8:c.A609G:p.T203T	6qA3.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.093452002	3	1	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	33305339	12A2p6	cell line	sgMsh2	33305339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	270	0	0	NA	exonic	Exoc4	synonymous SNV	"Exoc4:NM_001347089:exon5:c.T711C:p.P237P,Exoc4:NM_009148:exon5:c.T711C:p.P237P"	6qA3.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.714907814	2	0.9986387	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	34310017	12A2p6	cell line	sgMsh2	34310017	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	271	0	0	NA	exonic	Akr1b3	synonymous SNV	Akr1b3:NM_009658:exon6:c.C603T:p.H201H	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	2	0.9384405	TGT	synonymous	NA	NA	NA	NA
M7_p20	chr6	34357477	12A2p6	cell line	sgMsh2	34357477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	168	0	0	NA	exonic	Akr1b8	nonsynonymous SNV	Akr1b8:NM_008012:exon3:c.T251C:p.F84S	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.794342016	1	0.6864021	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	35271698	12A2p6	cell line	sgMsh2	35271698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	90	0	0	NA	exonic	Slc13a4	synonymous SNV	Slc13a4:NM_172892:exon14:c.C1513T:p.L505L	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9991574	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr6	35313706	12A2p6	cell line	sgMsh2	35313706	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	122	0	0	NA	exonic	Fam180a	nonsynonymous SNV	Fam180a:NM_173375:exon3:c.A341G:p.H114R	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9998592	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	36524565	12A2p6	cell line	sgMsh2	36524565	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	173	0	0	NA	exonic	Chrm2	nonsynonymous SNV	Chrm2:NM_203491:exon3:c.G1356T:p.K452N	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999919	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	38591414	12A2p6	cell line	sgMsh2	38591414	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	109	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon5:c.A493G:p.K165E,Luc7l2:NM_001170849:exon5:c.A493G:p.K165E,Luc7l2:NM_138680:exon5:c.A493G:p.K165E,Luc7l2:NM_001311099:exon6:c.A334G:p.K112E,Luc7l2:NM_001311100:exon6:c.A334G:p.K112E,Luc7l2:NM_001331222:exon8:c.A490G:p.K164E,Luc7l2:NM_001331223:exon9:c.A334G:p.K112E"	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.873776217	1	0.9801024	AAA	nonsynonymous	AAAGA	10	AAAGAAAAGA	NA
M7_p20	chr6	38818458	12A2p6	cell line	sgMsh2	38818458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	172	0	0	NA	exonic	Hipk2	nonsynonymous SNV	"Hipk2:NM_001136065:exon2:c.A854G:p.K285R,Hipk2:NM_001294143:exon2:c.A875G:p.K292R,Hipk2:NM_001294144:exon2:c.A875G:p.K292R,Hipk2:NM_010433:exon2:c.A875G:p.K292R"	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999914	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	38982203	12A2p6	cell line	sgMsh2	38982203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	359	0	0	NA	exonic	Tbxas1	nonsynonymous SNV	Tbxas1:NM_011539:exon4:c.T319C:p.F107L	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	1.25E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	39405918	12A2p6	cell line	sgMsh2	39405918	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	244	0	0	NA	exonic	Mkrn1	synonymous SNV	"Mkrn1:NM_001311109:exon3:c.T165C:p.A55A,Mkrn1:NM_018810:exon3:c.T357C:p.A119A"	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999998	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	39614154	12A2p6	cell line	sgMsh2	39614154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	78	0	0	NA	exonic	Braf	synonymous SNV	Braf:NM_139294:exon21:c.A2370G:p.T790T	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9785429	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	39639598	12A2p6	cell line	sgMsh2	39639598	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	269	0	0	NA	exonic	Braf	nonsynonymous SNV	Braf:NM_139294:exon16:c.G1797T:p.Q599H	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	3.89E-08	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	40462034	12A2p6	cell line	sgMsh2	40462034	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	230	0	0	NA	exonic	Wee2	nonsynonymous SNV	Wee2:NM_201370:exon8:c.T1090C:p.F364L	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	40612821	12A2p6	cell line	sgMsh2	40612821	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	66	0	0	NA	exonic	Tas2r138	frameshift deletion	Tas2r138:NM_001001451:exon1:c.490delT:p.C164Afs*12	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.878448817	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr6	40642996	12A2p6	cell line	sgMsh2	40642996	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	149	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon2:c.T18C:p.F6F,Mgam:NM_001368875:exon2:c.T18C:p.F6F"	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999689	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	40655285	12A2p6	cell line	sgMsh2	40655285	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	178	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon6:c.T552C:p.P184P,Mgam:NM_001368875:exon6:c.T552C:p.P184P"	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999939	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	40895432	12A2p6	cell line	sgMsh2	40895432	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	168	0	0	NA	exonic	Prss58	nonsynonymous SNV	Prss58:NM_175020:exon6:c.C656A:p.A219D	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9986339	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	41374996	12A2p6	cell line	sgMsh2	41374996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	703	0	0	NA	exonic	Prss3	nonsynonymous SNV	Prss3:NM_011645:exon3:c.T332G:p.L111R	6qB1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	41621271	12A2p6	cell line	sgMsh2	41621271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	154	0	0	NA	exonic	Trpv6	synonymous SNV	Trpv6:NM_022413:exon15:c.T2101C:p.L701L	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	1	0.9994726	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	41699217	12A2p6	cell line	sgMsh2	41699217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	227	0	0	NA	exonic	Kel	nonsynonymous SNV	Kel:NM_032540:exon7:c.C625T:p.P209S	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999996	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	42249455	12A2p6	cell line	sgMsh2	42249455	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	369	0	0	NA	exonic	Gstk1	nonsynonymous SNV	Gstk1:NM_029555:exon6:c.A497G:p.N166S	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.883121418	1	0.9999155	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	42357896	12A2p6	cell line	sgMsh2	42357896	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	158	0	0	NA	exonic	Zyx	frameshift deletion	"Zyx:NM_001289618:exon9:c.1542delT:p.F515Sfs*96,Zyx:NM_001289619:exon9:c.1542delT:p.F515Sfs*39,Zyx:NM_001289617:exon10:c.1635delT:p.F546Sfs*109,Zyx:NM_011777:exon10:c.1635delT:p.F546Sfs*39"	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	143	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999565	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	42955913	12A2p6	cell line	sgMsh2	42955913	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	645	0	0	NA	exonic	Olfr444	synonymous SNV	Olfr444:NM_146656:exon1:c.A414G:p.K138K	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	43167977	12A2p6	cell line	sgMsh2	43167977	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	76	0	0	NA	exonic	Olfr437	nonsynonymous SNV	Olfr437:NM_146296:exon1:c.G918T:p.K306N	6qB2.1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9981584	AGA	nonsynonymous	AGA	9	AGAAGAAGA	NA
M7_p20	chr6	47821159	12A2p6	cell line	sgMsh2	47821159	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	336	0	0	NA	exonic	Zfp786	nonsynonymous SNV	Zfp786:NM_177882:exon4:c.A844G:p.T282A	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1.89E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	47821490	12A2p6	cell line	sgMsh2	47821490	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	242	0	0	NA	exonic	Zfp786	synonymous SNV	Zfp786:NM_177882:exon4:c.A513C:p.V171V	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	47890077	12A2p6	cell line	sgMsh2	47890077	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	110	0	0	NA	exonic	Zfp282	synonymous SNV	Zfp282:NM_146175:exon3:c.C597T:p.T199T	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.52333121	2	0.9991412	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr6	48495247	12A2p6	cell line	sgMsh2	48495247	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	119	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon94:c.C14374T:p.R4792C	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.52333121	2	0.999536	TCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48568456	12A2p6	cell line	sgMsh2	48568456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	130	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.T212C:p.L71P,Lrrc61:NM_177736:exon3:c.T212C:p.L71P"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.612110612	2	0.9980506	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48659300	12A2p6	cell line	sgMsh2	48659300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	106	0	0	NA	exonic	Gimap8	synonymous SNV	"Gimap8:NM_212486:exon5:c.T1998C:p.D666D,Gimap8:NM_001077410:exon6:c.T1998C:p.D666D"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.943865219	1	0.9978447	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr6	48678048	12A2p6	cell line	sgMsh2	48678048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	134	0	0	NA	exonic	Gimap9	nonsynonymous SNV	Gimap9:NM_174960:exon2:c.A568G:p.M190V	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.999928	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48708056	12A2p6	cell line	sgMsh2	48708056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	163	0	0	NA	exonic	Gimap6	nonsynonymous SNV	Gimap6:NM_153175:exon1:c.A95G:p.Y32C	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999858	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48724226	12A2p6	cell line	sgMsh2	48724226	A	-	Deletion	Mutect2;Vardict	2	0.251	78	0	0	NA	exonic	Gimap7	frameshift deletion	Gimap7:NM_146167:exon2:c.745delA:p.I251Yfs*9	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M7_p20	chr6	48743156	12A2p6	cell line	sgMsh2	48743156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	59	0	0	NA	exonic	Gimap1	nonsynonymous SNV	"Gimap1:NM_008376:exon3:c.A701G:p.D234G,Gimap1:NM_175860:exon3:c.A701G:p.D234G"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9952486	GAC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr6	48906651	12A2p6	cell line	sgMsh2	48906651	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	405	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon1:c.C1460T:p.T487I,Aoc1:NM_001161622:exon2:c.C1460T:p.T487I,Aoc1:NM_029638:exon2:c.C1460T:p.T487I"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.873776217	1	0.9998672	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48907730	12A2p6	cell line	sgMsh2	48907730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	72	0	0	NA	exonic	Aoc1	nonsynonymous SNV	"Aoc1:NM_001161621:exon2:c.A1706G:p.Q569R,Aoc1:NM_001161622:exon3:c.A1706G:p.Q569R,Aoc1:NM_029638:exon3:c.A1706G:p.Q569R"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.756961215	1	0.6624355	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48975491	12A2p6	cell line	sgMsh2	48975491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	136	0	0	NA	exonic	Doxl2	nonsynonymous SNV	Doxl2:NM_001029987:exon1:c.A349G:p.T117A	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.901811818	1	0.996057	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	48990592	12A2p6	cell line	sgMsh2	48990592	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	206	0	0	NA	exonic	Svs1	nonsynonymous SNV	Svs1:NM_172888:exon3:c.A2195G:p.E732G	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.99993642	1	0.9999987	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	50216364	12A2p6	cell line	sgMsh2	50216364	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	378	0	0	NA	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon9:c.T1252G:p.S418A	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.775651615	2	0.9513355	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	50216371	12A2p6	cell line	sgMsh2	50216371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	374	0	0	NA	exonic	Gsdme	synonymous SNV	Gsdme:NM_018769:exon9:c.T1245C:p.V415V	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.784996816	2	0.863158	TAA	synonymous	NA	NA	NA	NA
M7_p20	chr6	50320078	12A2p6	cell line	sgMsh2	50320078	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	89	0	0	NA	exonic	Osbpl3	nonsynonymous SNV	"Osbpl3:NM_001163645:exon15:c.T1639A:p.C547S,Osbpl3:NM_027881:exon15:c.T1747A:p.C583S,Osbpl3:NM_001347213:exon17:c.T1840A:p.C614S"	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.999109	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	50574046	12A2p6	cell line	sgMsh2	50574046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	282	0	0	NA	exonic	4921507P07Rik	synonymous SNV	4921507P07Rik:NM_027564:exon10:c.T1422C:p.Y474Y	6qB2.3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	1	0.9999964	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	51458223	12A2p6	cell line	sgMsh2	51458223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	245	0	0	NA	exonic	Nfe2l3	nonsynonymous SNV	Nfe2l3:NM_010903:exon4:c.A1762G:p.T588A	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	52012366	12A2p6	cell line	sgMsh2	52012366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	47	0	0	NA	exonic	Skap2	synonymous SNV	Skap2:NM_018773:exon1:c.T36C:p.P12P	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9907467	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	53818171	12A2p6	cell line	sgMsh2	53818171	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	20	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.G2065T:p.G689C	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	1	0.9404297	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	55102864	12A2p6	cell line	sgMsh2	55102864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	62	0	0	NA	exonic	Crhr2	nonsynonymous SNV	"Crhr2:NM_001288620:exon4:c.A115G:p.I39V,Crhr2:NM_001288619:exon5:c.A430G:p.I144V,Crhr2:NM_001288618:exon6:c.A490G:p.I164V,Crhr2:NM_009953:exon6:c.A487G:p.I163V"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.957883019	1	0.9910482	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	55872621	12A2p6	cell line	sgMsh2	55872621	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	148	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.A137C:p.N46T	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999671	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	55898057	12A2p6	cell line	sgMsh2	55898057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	271	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon8:c.T991G:p.C331G	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.873776217	1	0.9987071	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	56741496	12A2p6	cell line	sgMsh2	56741496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	237	0	0	NA	exonic	Avl9	nonsynonymous SNV	Avl9:NM_030235:exon11:c.T1346C:p.I449T	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.766306415	2	0.856225	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	57159297	12A2p6	cell line	sgMsh2	57159297	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	229	0	0	NA	exonic	Vmn1r12	frameshift deletion	Vmn1r12:NM_001101579:exon1:c.378delA:p.K128Nfs*2	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.99526382	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr6	57159416	12A2p6	cell line	sgMsh2	57159416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	399	0	0	NA	exonic	Vmn1r12	nonsynonymous SNV	Vmn1r12:NM_001101579:exon1:c.T497C:p.V166A	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	1	4.79E-08	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	57233566	12A2p6	cell line	sgMsh2	57233566	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	363	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A128C:p.K43T	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.705562614	2	0.9999756	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	57233999	12A2p6	cell line	sgMsh2	57233999	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.178	491	0	0	NA	exonic	Vmn1r14	nonsynonymous SNV	Vmn1r14:NM_053237:exon1:c.A561G:p.I187M	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.831722816	1	0.9823425	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	57360638	12A2p6	cell line	sgMsh2	57360638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	560	0	0	NA	exonic	Vmn1r17	nonsynonymous SNV	Vmn1r17:NM_134171:exon1:c.A741G:p.I247M	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	1	1.12E-09	ATA	nonsynonymous	ATGAT	10	ATGATATGAT	NA
M7_p20	chr6	57611833	12A2p6	cell line	sgMsh2	57611833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	151	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon10:c.A1273G:p.R425G	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999722	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	57723627	12A2p6	cell line	sgMsh2	57723627	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	255	0	0	NA	exonic	Lancl2	synonymous SNV	Lancl2:NM_133737:exon4:c.T669C:p.A223A	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	57955654	12A2p6	cell line	sgMsh2	57955654	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	295	0	0	NA	exonic	Vmn1r24	frameshift deletion	Vmn1r24:NM_134173:exon1:c.878delA:p.N293Tfs*4	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr6	57956007	12A2p6	cell line	sgMsh2	57956007	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	494	0	0	NA	exonic	Vmn1r24	nonsynonymous SNV	Vmn1r24:NM_134173:exon1:c.G525T:p.L175F	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.303719006	3	1	TCA	nonsynonymous	AATC	8	AATCAATC	NA
M7_p20	chr6	57978758	12A2p6	cell line	sgMsh2	57978758	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	524	0	0	NA	exonic	Vmn1r25	nonsynonymous SNV	Vmn1r25:NM_053238:exon1:c.T545C:p.F182S	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.99526382	1	1.00E-09	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	58307429	12A2p6	cell line	sgMsh2	58307429	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	730	0	0	NA	exonic	Vmn1r29	synonymous SNV	Vmn1r29:NM_053232:exon1:c.C133T:p.L45L	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.981246019	1	1	ACT	synonymous	NA	NA	NA	NA
M7_p20	chr6	58876505	12A2p6	cell line	sgMsh2	58876505	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	205	0	0	NA	exonic	Herc3	nonsynonymous SNV	"Herc3:NM_001361967:exon14:c.G1650T:p.Q550H,Herc3:NM_028705:exon14:c.G1650T:p.Q550H,Herc3:NM_001361966:exon15:c.G1650T:p.Q550H"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999986	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	58955281	12A2p6	cell line	sgMsh2	58955281	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	256	0	0	NA	exonic	Fam13a	nonsynonymous SNV	Fam13a:NM_153574:exon11:c.A1106T:p.K369M	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9996183	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	60827553	12A2p6	cell line	sgMsh2	60827553	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	112	0	0	NA	exonic	Snca	nonsynonymous SNV	"Snca:NM_001042451:exon2:c.G49A:p.A17T,Snca:NM_009221:exon2:c.G49A:p.A17T"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9997537	GCC	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M7_p20	chr6	60976637	12A2p6	cell line	sgMsh2	60976637	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	267	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon6:c.A1901C:p.Q634P,Mmrn1:NM_027613:exon6:c.A1901C:p.Q634P"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	4.34E-08	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	61311574	12A2p6	cell line	sgMsh2	61311574	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.129	73	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon2:c.T720C:p.S240S,Ccser1:NM_183310:exon2:c.T720C:p.S240S"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.602765412	2	9.47E-05	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	61638471	12A2p6	cell line	sgMsh2	61638471	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	155	0	0	NA	exonic	Ccser1	synonymous SNV	"Ccser1:NM_001164316:exon7:c.A1956T:p.S652S,Ccser1:NM_183310:exon7:c.A1956T:p.S652S"	6qB3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.677527013	2	0.9910207	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	64665882	12A2p6	cell line	sgMsh2	64665882	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	95	0	0	NA	exonic	Grid2	nonsynonymous SNV	Grid2:NM_008167:exon16:c.A2627G:p.H876R	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.728925614	2	0.6422765	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	65859463	12A2p6	cell line	sgMsh2	65859463	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	83	0	0	NA	exonic	Prdm5	nonsynonymous SNV	Prdm5:NM_027547:exon6:c.G757A:p.E253K	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.616783212	2	0.9578549	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	65870434	12A2p6	cell line	sgMsh2	65870434	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	184	0	0	NA	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon5:c.T508G:p.F170V,Prdm5:NM_027547:exon9:c.T1060G:p.F354V"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9991138	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	65953308	12A2p6	cell line	sgMsh2	65953308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	219	0	0	NA	exonic	4930544G11Rik	nonsynonymous SNV	4930544G11Rik:NM_001161773:exon1:c.A526G:p.R176G	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.967228219	1	0.9999943	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	66539850	12A2p6	cell line	sgMsh2	66539851	TA	AG	DBS	Mutect2;Vardict	2	0.108	470	0	0	NA	exonic	Mad2l1	nonframeshift substitution	"Mad2l1:NM_001355624:exon5:c.525_526AG:p.T176A,Mad2l1:NM_019499:exon5:c.525_526AG:p.T176A"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.50464081	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	71284384	12A2p6	cell line	sgMsh2	71284384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	157	0	0	NA	exonic	Krcc1	synonymous SNV	"Krcc1:NM_001354706:exon3:c.A399G:p.V133V,Krcc1:NM_145568:exon4:c.A399G:p.V133V"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.747616015	2	0.8016725	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	71300395	12A2p6	cell line	sgMsh2	71300395	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	59	0	0	NA	exonic	Gm1070	nonsynonymous SNV	Gm1070:NM_001357905:exon2:c.A271G:p.S91G	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9952486	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	241	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	1	0.9999332	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	71496844	12A2p6	cell line	sgMsh2	71496844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	171	0	0	NA	exonic	Rnf103	nonsynonymous SNV	Rnf103:NM_009543:exon2:c.A240C:p.E80D	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.719580414	2	0.9601668	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	71510177	12A2p6	cell line	sgMsh2	71510177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	358	0	0	NA	exonic	Rnf103	synonymous SNV	"Rnf103:NM_001308303:exon4:c.T1269C:p.N423N,Rnf103:NM_009543:exon4:c.T1791C:p.N597N"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	2	0.9999897	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	222	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.756961215	2	0.898606	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	115	0	0	NA	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.822377616	1	0.8980589	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	73127877	12A2p6	cell line	sgMsh2	73127877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	253	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon35:c.A5728G:p.T1910A	6qC1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.855085817	1	0.9924993	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	77244542	12A2p6	cell line	sgMsh2	77244542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	103	0	0	NA	exonic	Lrrtm1	synonymous SNV	"Lrrtm1:NM_001362109:exon2:c.C981A:p.S327S,Lrrtm1:NM_028880:exon2:c.C981A:p.S327S"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.878448817	1	0.9809893	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr6	77245123	12A2p6	cell line	sgMsh2	77245123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	106	0	0	NA	exonic	Lrrtm1	nonsynonymous SNV	"Lrrtm1:NM_001362109:exon2:c.A1562G:p.E521G,Lrrtm1:NM_028880:exon2:c.A1562G:p.E521G"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9996555	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	77758562	12A2p6	cell line	sgMsh2	77758562	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	96	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon3:c.A132G:p.K44K,Ctnna2:NM_009819:exon3:c.A132G:p.K44K,Ctnna2:NM_001109764:exon4:c.A132G:p.K44K,Ctnna2:NM_145732:exon4:c.A132G:p.K44K"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9993975	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	78376435	12A2p6	cell line	sgMsh2	78376435	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	181	0	0	NA	exonic	Reg3d	nonsynonymous SNV	"Reg3d:NM_001161741:exon4:c.C286T:p.H96Y,Reg3d:NM_013893:exon5:c.C424T:p.H142Y"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	2	0.7577398	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	81964328	12A2p6	cell line	sgMsh2	81964328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	69	0	0	NA	exonic	Mrpl19	nonsynonymous SNV	Mrpl19:NM_026490:exon2:c.G251A:p.R84K	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9972784	CCT	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	71	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9749305	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	84099572	12A2p6	cell line	sgMsh2	84099572	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	83	0	0	NA	exonic	Dysf	nonsynonymous SNV	"Dysf:NM_001310152:exon19:c.T1876C:p.Y626H,Dysf:NM_001077694:exon20:c.T1966C:p.Y656H,Dysf:NM_021469:exon20:c.T1969C:p.Y657H"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9987542	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	85484344	12A2p6	cell line	sgMsh2	85484344	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	16	0	0	NA	exonic	Fbxo41	synonymous SNV	"Fbxo41:NM_001289674:exon2:c.G381A:p.L127L,Fbxo41:NM_001289675:exon2:c.G381A:p.L127L,Fbxo41:NM_001001160:exon3:c.G381A:p.L127L"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9497451	GCA	synonymous	GCAGG	10	GCAGGGCAGG	NA
M7_p20	chr6	85628589	12A2p6	cell line	sgMsh2	85628589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	240	0	0	NA	exonic	Alms1	nonsynonymous SNV	Alms1:NM_145223:exon10:c.T5813C:p.V1938A	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.579402411	2	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	86118765	12A2p6	cell line	sgMsh2	86118765	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	95	0	0	NA	exonic	Add2	nonsynonymous SNV	"Add2:NM_001271857:exon16:c.A2162C:p.E721A,Add2:NM_001271858:exon16:c.A2162C:p.E721A,Add2:NM_001271859:exon16:c.A2162C:p.E721A,Add2:NM_013458:exon16:c.A2162C:p.E721A"	6qC3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.887794018	1	0.9832084	GAG	nonsynonymous	AAG	15	AAGAAGAAGGAGAAG	NA
M7_p20	chr6	86524911	12A2p6	cell line	sgMsh2	86524911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	99	0	0	NA	exonic	Pcbp1	synonymous SNV	Pcbp1:NM_011865:exon1:c.T1005C:p.S335S	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9994905	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	87750644	12A2p6	cell line	sgMsh2	87750644	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.143	45	0	0	NA	exonic	Efcc1	nonsynonymous SNV	Efcc1:NM_001159697:exon4:c.T1078C:p.S360P	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.668181813	2	0.5109226	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	135	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.574729811	2	0.9996991	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	55	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.565384611	2	0.09494859	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	88515563	12A2p6	cell line	sgMsh2	88515563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	100	0	0	NA	exonic	Sec61a1	nonsynonymous SNV	Sec61a1:NM_016906:exon3:c.T82C:p.F28L	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9995182	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	88888231	12A2p6	cell line	sgMsh2	88888231	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	55	0	0	NA	exonic	Mcm2	nonsynonymous SNV	Mcm2:NM_008564:exon9:c.A1463T:p.H488L	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9940646	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	90179065	12A2p6	cell line	sgMsh2	90179065	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	132	0	0	NA	exonic	Vmn1r52	frameshift deletion	Vmn1r52:NM_053222:exon1:c.350delA:p.S118Afs*3	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.957883019	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr6	90689688	12A2p6	cell line	sgMsh2	90689688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	220	0	0	NA	exonic	Iqsec1	nonsynonymous SNV	"Iqsec1:NM_001134383:exon3:c.G1496A:p.S499N,Iqsec1:NM_001134384:exon3:c.G1454A:p.S485N,Iqsec1:NM_001356440:exon3:c.G1454A:p.S485N"	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.859758417	1	0.9920912	GCT	nonsynonymous	TGCT	8	TGCTTGCT	NA
M7_p20	chr6	91172243	12A2p6	cell line	sgMsh2	91172243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	63	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon9:c.G728T:p.R243M	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9961974	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	91233535	12A2p6	cell line	sgMsh2	91233535	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	66	0	0	NA	exonic	Fbln2	nonsynonymous SNV	"Fbln2:NM_001081437:exon2:c.T460A:p.S154T,Fbln2:NM_007992:exon2:c.T460A:p.S154T"	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.953210419	1	0.9917029	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	91233556	12A2p6	cell line	sgMsh2	91233556	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	65	0	0	NA	exonic	Fbln2	nonsynonymous SNV	"Fbln2:NM_001081437:exon2:c.T481A:p.C161S,Fbln2:NM_007992:exon2:c.T481A:p.C161S"	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9965984	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	91365853	12A2p6	cell line	sgMsh2	91365853	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	187	0	0	NA	exonic	Wnt7a	nonsynonymous SNV	Wnt7a:NM_009527:exon4:c.A1046C:p.K349T	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.99526382	1	0.9999951	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	91408767	12A2p6	cell line	sgMsh2	91408767	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	157	0	0	NA	exonic	Wnt7a	nonsynonymous SNV	"Wnt7a:NM_001363757:exon2:c.T203C:p.M68T,Wnt7a:NM_009527:exon2:c.T203C:p.M68T"	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.668181813	2	0.9947457	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	93678265	12A2p6	cell line	sgMsh2	93678265	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	47	0	0	NA	exonic	Magi1	nonsynonymous SNV	"Magi1:NM_001083320:exon23:c.A3751G:p.T1251A,Magi1:NM_001286784:exon23:c.A4396G:p.T1466A,Magi1:NM_001029850:exon24:c.A4399G:p.T1467A"	6qD1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.878448817	1	0.9484051	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	94611480	12A2p6	cell line	sgMsh2	94611480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	145	0	0	NA	exonic	Lrig1	nonsynonymous SNV	"Lrig1:NM_001355269:exon13:c.A1687G:p.I563V,Lrig1:NM_008377:exon13:c.A1687G:p.I563V"	6qD2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.728925614	2	0.8775713	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	97134382	12A2p6	cell line	sgMsh2	97134382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	113	0	0	NA	exonic	Eogt	nonsynonymous SNV	Eogt:NM_175313:exon8:c.T517C:p.F173L	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.803687216	1	0.8208514	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	97175886	12A2p6	cell line	sgMsh2	97175886	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	107	0	0	NA	exonic	Tmf1	nonsynonymous SNV	Tmf1:NM_001081111:exon2:c.T1225G:p.L409V	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.859758417	1	0.9677183	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	97176631	12A2p6	cell line	sgMsh2	97176631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	77	0	0	NA	exonic	Tmf1	synonymous SNV	Tmf1:NM_001081111:exon2:c.T480A:p.T160T	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.747616015	1	0.5883179	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	97203492	12A2p6	cell line	sgMsh2	97203492	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	128	0	0	NA	exonic	Uba3	synonymous SNV	"Uba3:NM_001111106:exon2:c.T123C:p.D41D,Uba3:NM_001301857:exon3:c.T102C:p.D34D,Uba3:NM_001301858:exon3:c.T165C:p.D55D,Uba3:NM_001301859:exon3:c.T165C:p.D55D,Uba3:NM_011666:exon3:c.T165C:p.D55D"	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.827050216	1	0.9149091	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	98013757	12A2p6	cell line	sgMsh2	98013757	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	153	0	0	NA	exonic	Mitf	nonsynonymous SNV	"Mitf:NM_008601:exon8:c.C799A:p.L267I,Mitf:NM_001113198:exon9:c.C1120A:p.L374I,Mitf:NM_001178049:exon9:c.C1072A:p.L358I"	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999751	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	390	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.813032416	1	0.7964811	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	102204002	12A2p6	cell line	sgMsh2	102204002	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	137	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon17:c.G2231A:p.G744E	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.859758417	1	0.9776966	CCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	102273813	12A2p6	cell line	sgMsh2	102273813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	162	0	0	NA	exonic	Cntn3	nonsynonymous SNV	Cntn3:NM_008779:exon7:c.A773G:p.Q258R	6qD3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9983933	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	103674999	12A2p6	cell line	sgMsh2	103674999	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	245	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon9:c.A827C:p.K276T	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.822377616	1	0.9108205	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	103729287	12A2p6	cell line	sgMsh2	103729287	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	174	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon27:c.C3582A:p.S1194S	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.962555619	1	0.9999426	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr6	104774496	12A2p6	cell line	sgMsh2	104774496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	324	0	0	NA	exonic	Cntn6	nonsynonymous SNV	Cntn6:NM_017383:exon10:c.T1112C:p.L371P	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.864431017	1	0.9986633	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	108152244	12A2p6	cell line	sgMsh2	108152244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	61	0	0	NA	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.T817C:p.F273L	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9957493	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	108152315	12A2p6	cell line	sgMsh2	108152315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	54	0	0	NA	exonic	Sumf1	nonsynonymous SNV	Sumf1:NM_145937:exon6:c.A746G:p.Q249R	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9937253	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.145	95	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.677527013	2	9.47E-08	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M7_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	114	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.897139218	1	0.9918659	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	110646260	12A2p6	cell line	sgMsh2	110646260	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	93	0	0	NA	exonic	Grm7	synonymous SNV	"Grm7:NM_001346640:exon1:c.C393T:p.T131T,Grm7:NM_177328:exon1:c.C393T:p.T131T"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9992875	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr6	111358962	12A2p6	cell line	sgMsh2	111358962	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	196	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon8:c.G2333T:p.R778L,Grm7:NM_177328:exon8:c.G2333T:p.R778L"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999978	CGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	113292427	12A2p6	cell line	sgMsh2	113292427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	250	0	0	NA	exonic	Cpne9	nonsynonymous SNV	Cpne9:NM_170673:exon11:c.T754C:p.F252L	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.691544814	2	0.9995734	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	113315368	12A2p6	cell line	sgMsh2	113315368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	75	0	0	NA	exonic	Brpf1	synonymous SNV	"Brpf1:NM_001282126:exon3:c.A1374G:p.L458L,Brpf1:NM_001282127:exon3:c.A1374G:p.L458L,Brpf1:NM_001282128:exon3:c.A1374G:p.L458L,Brpf1:NM_030178:exon3:c.A1374G:p.L458L"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	1	0.6737378	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	114302580	12A2p6	cell line	sgMsh2	114302580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	117	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.T319C:p.Y107H	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.831722816	1	0.9252119	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	114307727	12A2p6	cell line	sgMsh2	114307727	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	135	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon8:c.A745G:p.I249V	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999319	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	114314446	12A2p6	cell line	sgMsh2	114314446	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.104	56	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon15:c.A1679C:p.K560T	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.48595041	2	0.9398136	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	115925759	12A2p6	cell line	sgMsh2	115925759	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.128	30	0	0	NA	exonic	Ift122	nonsynonymous SNV	"Ift122:NM_001167763:exon28:c.A3301T:p.S1101C,Ift122:NM_031177:exon28:c.A3304T:p.S1102C"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.598092812	1	0.005238561	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	115967825	12A2p6	cell line	sgMsh2	115967825	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.138	86	0	0	NA	exonic	Plxnd1	nonsynonymous SNV	Plxnd1:NM_026376:exon15:c.A3007G:p.I1003V	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.644818813	2	0.9287123	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	116043378	12A2p6	cell line	sgMsh2	116043378	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	150	0	0	NA	exonic	Tmcc1	nonsynonymous SNV	"Tmcc1:NM_001364577:exon2:c.A32G:p.K11R,Tmcc1:NM_177412:exon4:c.A992G:p.K331R"	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.49062301	2	0.9987285	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	116414553	12A2p6	cell line	sgMsh2	116414553	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Alox5	nonsynonymous SNV	Alox5:NM_009662:exon9:c.G1242T:p.Q414H	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9998592	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	116427220	12A2p6	cell line	sgMsh2	116427220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	169	0	0	NA	exonic	Alox5	synonymous SNV	Alox5:NM_009662:exon4:c.A477G:p.K159K	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999898	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr6	116582189	12A2p6	cell line	sgMsh2	116582189	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	325	0	0	NA	exonic	Olfr215	synonymous SNV	Olfr215:NM_146446:exon1:c.C756T:p.S252S	6qE3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.948537819	1	0.9999997	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr6	117176090	12A2p6	cell line	sgMsh2	117176090	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	29	0	0	NA	exonic	Cxcl12	nonsynonymous SNV	Cxcl12:NM_001012477:exon4:c.C271T:p.R91C	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	1	0.9561067	GCG	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr6	118153974	12A2p6	cell line	sgMsh2	118153974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	163	0	0	NA	exonic	Ret	nonsynonymous SNV	Ret:NM_009050:exon20:c.T3227C:p.V1076A	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999858	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	118404595	12A2p6	cell line	sgMsh2	118404595	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	145	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.T1981G:p.S661A	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.976573419	1	0.999889	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	80	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	NA	NA	CGT	frameshift	NA	NA	NA	-1
M7_p20	chr6	118683460	12A2p6	cell line	sgMsh2	118683460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	43	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	Cacna1c:NM_001256001:exon18:c.C2416T:p.P806S	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.794342016	1	0.8483991	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	56	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.822377616	1	0.8917494	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M7_p20	chr6	119242886	12A2p6	cell line	sgMsh2	119242886	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	311	0	0	NA	exonic	Cacna2d4	nonsynonymous SNV	"Cacna2d4:NM_001033382:exon5:c.A532G:p.R178G,Cacna2d4:NM_001347427:exon5:c.A532G:p.R178G"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	4.62E-09	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	119359042	12A2p6	cell line	sgMsh2	119359042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	107	0	0	NA	exonic	Adipor2	nonsynonymous SNV	"Adipor2:NM_001355692:exon6:c.T718C:p.Y240H,Adipor2:NM_197985:exon6:c.T718C:p.Y240H"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9996742	TAG	nonsynonymous	AGAA	8	AGAAAGAA	NA
M7_p20	chr6	120207127	12A2p6	cell line	sgMsh2	120207127	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	0	0	NA	exonic	B4galnt3	synonymous SNV	B4galnt3:NM_198884:exon18:c.T2721C:p.P907P	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.668181813	2	0.8646572	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	120208928	12A2p6	cell line	sgMsh2	120208928	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.103	91	0	0	NA	exonic	B4galnt3	nonsynonymous SNV	B4galnt3:NM_198884:exon17:c.A2549C:p.Q850P	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.48127781	2	0.9827303	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	120334800	12A2p6	cell line	sgMsh2	120334800	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	128	0	0	NA	exonic	Ccdc77	nonsynonymous SNV	"Ccdc77:NM_001381937:exon6:c.A634G:p.N212D,Ccdc77:NM_001381934:exon8:c.A790G:p.N264D,Ccdc77:NM_001381935:exon8:c.A736G:p.N246D,Ccdc77:NM_001381936:exon8:c.A736G:p.N246D,Ccdc77:NM_001381938:exon8:c.A133G:p.N45D,Ccdc77:NM_026028:exon8:c.A790G:p.N264D"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9998993	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	120439127	12A2p6	cell line	sgMsh2	120439127	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	165	0	0	NA	exonic	Kdm5a	nonsynonymous SNV	Kdm5a:NM_145997:exon28:c.A5007T:p.Q1669H	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.841068017	1	0.9602248	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	120756781	12A2p6	cell line	sgMsh2	120756781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	100	0	0	NA	exonic	Cecr2	synonymous SNV	"Cecr2:NM_001128151:exon14:c.A1728G:p.S576S,Cecr2:NM_001368706:exon14:c.A1728G:p.S576S"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.957883019	1	0.9982359	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	120957707	12A2p6	cell line	sgMsh2	120957707	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	111	0	0	NA	exonic	Mical3	stopgain	Mical3:NM_001270475:exon27:c.A5410T:p.K1804X	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9997395	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	121253796	12A2p6	cell line	sgMsh2	121253796	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	544	0	0	NA	exonic	Usp18	stopgain	Usp18:NM_011909:exon3:c.T183A:p.C61X	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.925174818	1	3.25E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	121641338	12A2p6	cell line	sgMsh2	121641338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	211	0	0	NA	exonic	A2m	nonsynonymous SNV	A2m:NM_175628:exon6:c.T589C:p.S197P	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.98591862	1	0.9999976	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	122078750	12A2p6	cell line	sgMsh2	122078750	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	283	0	0	NA	exonic	Mug2	nonsynonymous SNV	Mug2:NM_008646:exon27:c.T3391G:p.F1131V	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1.83E-08	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	122279655	12A2p6	cell line	sgMsh2	122279655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	179	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon2:c.A171G:p.Q57Q	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.570057211	2	0.9999915	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	122282776	12A2p6	cell line	sgMsh2	122282776	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	135	0	0	NA	exonic	Klrg1	synonymous SNV	Klrg1:NM_016970:exon1:c.G36A:p.L12L	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.934520019	1	0.9989607	GCA	synonymous	NA	NA	NA	NA
M7_p20	chr6	122313281	12A2p6	cell line	sgMsh2	122313281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	193	0	0	NA	exonic	M6pr	nonsynonymous SNV	M6pr:NM_010749:exon3:c.G202T:p.G68C	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.761633815	2	0.7943768	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	122321956	12A2p6	cell line	sgMsh2	122321956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	79	0	0	NA	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon9:c.A2031C:p.K677N,Phc1:NM_001271579:exon10:c.A2187C:p.K729N,Phc1:NM_007905:exon10:c.A2187C:p.K729N,Phc1:NM_001355215:exon11:c.A2235C:p.K745N"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.953210419	1	0.9951452	GTT	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr6	122322387	12A2p6	cell line	sgMsh2	122322387	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	149	0	0	NA	exonic	Phc1	nonsynonymous SNV	"Phc1:NM_001042623:exon8:c.C1841A:p.P614H,Phc1:NM_001271579:exon9:c.C1997A:p.P666H,Phc1:NM_007905:exon9:c.C1997A:p.P666H,Phc1:NM_001355215:exon10:c.C2045A:p.P682H"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9977168	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	122456512	12A2p6	cell line	sgMsh2	122456512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	197	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon6:c.T849C:p.G283G	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.897139218	1	0.9989006	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	122580767	12A2p6	cell line	sgMsh2	122580767	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	172	0	0	NA	exonic	Apobec1	frameshift deletion	"Apobec1:NM_001134391:exon7:c.482delC:p.P161Lfs*14,Apobec1:NM_031159:exon7:c.482delC:p.P161Lfs*14"	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M7_p20	chr6	122736594	12A2p6	cell line	sgMsh2	122736594	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	75	0	0	NA	exonic	Slc2a3	nonsynonymous SNV	Slc2a3:NM_011401:exon5:c.G658A:p.D220N	6qF1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.897139218	1	0.9793633	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	122850369	12A2p6	cell line	sgMsh2	122850369	A	-	Deletion	Mutect2;Vardict	2	0.197	169	0	0	NA	exonic	C3ar1	frameshift deletion	C3ar1:NM_009779:exon2:c.888delT:p.T297Lfs*29	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.920502218	NA	NA	TAG	frameshift	NA	NA	NA	-1
M7_p20	chr6	122850373	12A2p6	cell line	sgMsh2	122850373	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.195	171	0	0	NA	exonic	C3ar1	nonsynonymous SNV	C3ar1:NM_009779:exon2:c.T884C:p.F295S	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.911157018	1	0.9990152	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	123235521	12A2p6	cell line	sgMsh2	123235521	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	85	0	0	NA	exonic	Clec4n	nonsynonymous SNV	"Clec4n:NM_001190320:exon3:c.T205G:p.F69V,Clec4n:NM_001190321:exon3:c.T193G:p.F65V,Clec4n:NM_020001:exon4:c.T295G:p.F99V"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9988859	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	123637661	12A2p6	cell line	sgMsh2	123637661	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	175	0	0	NA	exonic	Vmn2r22	synonymous SNV	Vmn2r22:NM_001104637:exon3:c.A969G:p.G323G	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.794342016	1	0.6749767	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr6	123712979	12A2p6	cell line	sgMsh2	123712979	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	673	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.A813G:p.T271T	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.766306415	2	0.9998536	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	123822895	12A2p6	cell line	sgMsh2	123822895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	326	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon6:c.A2487G:p.L829L	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.850413217	1	0.9947008	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	123839314	12A2p6	cell line	sgMsh2	123839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	242	0	0	NA	exonic	Vmn2r25	nonsynonymous SNV	Vmn2r25:NM_001104641:exon3:c.A1307G:p.Q436R	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9994752	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124039164	12A2p6	cell line	sgMsh2	124039164	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	496	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon3:c.A586C:p.M196L	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124050697	12A2p6	cell line	sgMsh2	124050697	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	681	0	0	NA	exonic	Vmn2r26	nonsynonymous SNV	Vmn2r26:NM_019917:exon4:c.A1395C:p.E465D	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.289701206	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124325514	12A2p6	cell line	sgMsh2	124325514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	138	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon12:c.A3036G:p.K1012K,Cd163:NM_053094:exon12:c.A3036G:p.K1012K"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.98591862	1	0.9998952	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	124519754	12A2p6	cell line	sgMsh2	124519754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	340	0	0	NA	exonic	C1ra	nonsynonymous SNV	C1ra:NM_023143:exon9:c.A1148G:p.N383S	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.827050216	1	0.9489119	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124702305	12A2p6	cell line	sgMsh2	124702305	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	230	0	0	NA	exonic	Lpcat3	nonsynonymous SNV	Lpcat3:NM_145130:exon8:c.A856G:p.T286A	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.887794018	1	0.9990398	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124728798	12A2p6	cell line	sgMsh2	124728798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	54	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A505G:p.I169V,Ptpn6:NM_013545:exon4:c.A499G:p.I167V"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9937253	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124763128	12A2p6	cell line	sgMsh2	124763128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	151	0	0	NA	exonic	Eno2	nonsynonymous SNV	"Eno2:NM_001302642:exon7:c.T587C:p.I196T,Eno2:NM_001355220:exon9:c.T944C:p.I315T,Eno2:NM_013509:exon9:c.T944C:p.I315T"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.780324215	1	0.5641796	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124831481	12A2p6	cell line	sgMsh2	124831481	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	152	0	0	NA	exonic	Cdca3	synonymous SNV	Cdca3:NM_013538:exon3:c.T240C:p.S80S	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.967228219	1	0.9998777	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	124837668	12A2p6	cell line	sgMsh2	124837668	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	200	0	0	NA	exonic	Gnb3	nonsynonymous SNV	Gnb3:NM_013530:exon5:c.A266T:p.K89M	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.948537819	1	0.999957	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	124961161	12A2p6	cell line	sgMsh2	124961161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	64	0	0	NA	exonic	Cops7a	nonsynonymous SNV	"Cops7a:NM_001164089:exon5:c.A527C:p.E176A,Cops7a:NM_001355541:exon5:c.A527C:p.E176A,Cops7a:NM_001355542:exon5:c.A527C:p.E176A,Cops7a:NM_001379119:exon5:c.A527C:p.E176A,Cops7a:NM_001379120:exon5:c.A527C:p.E176A,Cops7a:NM_001379122:exon5:c.A527C:p.E176A,Cops7a:NM_001379123:exon5:c.A527C:p.E176A,Cops7a:NM_001379124:exon5:c.A527C:p.E176A,Cops7a:NM_001379125:exon5:c.A527C:p.E176A,Cops7a:NM_012003:exon5:c.A527C:p.E176A"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.682199614	2	6.73E-06	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	125024219	12A2p6	cell line	sgMsh2	125024219	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	120	0	0	NA	exonic	Zfp384	nonsynonymous SNV	"Zfp384:NM_001347452:exon3:c.A253G:p.T85A,Zfp384:NM_001252083:exon4:c.A253G:p.T85A,Zfp384:NM_001372420:exon4:c.A253G:p.T85A,Zfp384:NM_001372422:exon4:c.A253G:p.T85A,Zfp384:NM_001372424:exon4:c.A253G:p.T85A,Zfp384:NM_175557:exon4:c.A253G:p.T85A"	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9998425	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	125165300	12A2p6	cell line	sgMsh2	125165300	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	159	0	0	NA	exonic	Gapdh	synonymous SNV	Gapdh:NM_001289726:exon2:c.A72T:p.V24V	6qF2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.813032416	1	0.8541552	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr6	125357850	12A2p6	cell line	sgMsh2	125357850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	130	0	0	NA	exonic	Tnfrsf1a	nonsynonymous SNV	Tnfrsf1a:NM_011609:exon4:c.A452G:p.N151S	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.747616015	2	0.6910161	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	125656649	12A2p6	cell line	sgMsh2	125656649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	318	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon36:c.T6097C:p.Y2033H	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	3.45E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	125657035	12A2p6	cell line	sgMsh2	125657035	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	91	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon37:c.T6292C:p.L2098L	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.967228219	1	0.9980033	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	125667493	12A2p6	cell line	sgMsh2	125667493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	138	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon43:c.T7310C:p.V2437A	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.911157018	1	0.9974799	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	126101934	12A2p6	cell line	sgMsh2	126101934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	139	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A608G:p.Y203C,Ntf3:NM_008742:exon2:c.A569G:p.Y190C,Ntf3:NM_001164034:exon3:c.A608G:p.Y203C"	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999456	ATA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	102	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.654164013	2	0.9581602	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	126534980	12A2p6	cell line	sgMsh2	126534980	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	21	0	0	NA	exonic	Kcna5	stopgain	Kcna5:NM_145983:exon1:c.C184T:p.Q62X	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9615551	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	126866824	12A2p6	cell line	sgMsh2	126866824	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	119	0	0	NA	exonic	Akap3	nonsynonymous SNV	Akap3:NM_009650:exon5:c.A2405G:p.Y802C	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.845740617	1	0.9542584	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	126928223	12A2p6	cell line	sgMsh2	126928223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	388	0	0	NA	exonic	Rad51ap1	synonymous SNV	"Rad51ap1:NM_001347455:exon5:c.T324C:p.T108T,Rad51ap1:NM_009013:exon5:c.T324C:p.T108T"	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.850413217	1	0.997104	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	127146068	12A2p6	cell line	sgMsh2	127146068	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	103	0	0	NA	exonic	Ccnd2	nonsynonymous SNV	Ccnd2:NM_009829:exon3:c.C523A:p.L175M	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9995926	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	128487428	12A2p6	cell line	sgMsh2	128487428	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	208	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon31:c.A4135G:p.T1379A	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.906484418	1	0.9995371	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	128488934	12A2p6	cell line	sgMsh2	128488934	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	89	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon29:c.A3782G:p.N1261S	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.999109	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	128499002	12A2p6	cell line	sgMsh2	128499002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	173	0	0	NA	exonic	Pzp	synonymous SNV	Pzp:NM_007376:exon17:c.A2058T:p.P686P	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999919	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	128581002	12A2p6	cell line	sgMsh2	128581002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	131	0	0	NA	exonic	A2ml1	nonsynonymous SNV	A2ml1:NM_001001179:exon2:c.A190G:p.T64A	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.756961215	2	0.6104472	GTA	nonsynonymous	TAG	8	TAGTAGTA	NA
M7_p20	chr6	129401861	12A2p6	cell line	sgMsh2	129401861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	174	0	0	NA	exonic	Clec1b	nonsynonymous SNV	"Clec1b:NM_001204239:exon3:c.A310G:p.T104A,Clec1b:NM_019985:exon4:c.A406G:p.T136A"	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.845740617	1	0.9705972	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	130281851	12A2p6	cell line	sgMsh2	130281851	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	436	0	0	NA	exonic	Klra10	synonymous SNV	Klra10:NM_008459:exon1:c.G72A:p.R24R	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.714907814	2	0.9999933	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr6	130327147	12A2p6	cell line	sgMsh2	130327147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	554	0	0	NA	exonic	Klra3	nonsynonymous SNV	"Klra3:NM_001289604:exon6:c.T581C:p.V194A,Klra3:NM_001289605:exon6:c.T581C:p.V194A,Klra3:NM_010648:exon6:c.T581C:p.V194A"	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.738270815	2	0.9999917	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	131684865	12A2p6	cell line	sgMsh2	131684865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	109	0	0	NA	exonic	Tas2r104	synonymous SNV	Tas2r104:NM_207011:exon1:c.C880T:p.L294L	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.803687216	1	0.8235572	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr6	131686688	12A2p6	cell line	sgMsh2	131686688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	63	0	0	NA	exonic	Tas2r105	nonsynonymous SNV	Tas2r105:NM_020501:exon1:c.T776C:p.L259P	6qF3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.915829618	1	0.9807849	CAG	nonsynonymous	GTTT	8	GTTTGTTT	NA
M7_p20	chr6	132600157	12A2p6	cell line	sgMsh2	132600159	CCA	-	Deletion	Strelka2;Vardict	2	0.0682	44	0	0	NA	exonic	Prp2	nonframeshift deletion	Prp2:NM_031499:exon2:c.406_408del:p.P139del	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.318671326	NA	NA	CCC	inframe	CCA	12	CCACCACCACCA	-3
M7_p20	chr6	132711246	12A2p6	cell line	sgMsh2	132711246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	287	0	0	NA	exonic	Tas2r122	nonsynonymous SNV	Tas2r122:NM_001039128:exon1:c.A683G:p.H228R	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.883121418	1	0.9995689	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	197	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9999979	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	132910140	12A2p6	cell line	sgMsh2	132910140	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	350	0	0	NA	exonic	Tas2r125	nonsynonymous SNV	Tas2r125:NM_207027:exon1:c.C490T:p.L164F	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.780324215	2	0.8905901	CCT	nonsynonymous	CTTT	8	CTTTCTTT	NA
M7_p20	chr6	133036200	12A2p6	cell line	sgMsh2	133036200	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	49	0	0	NA	exonic	Tas2r103	nonsynonymous SNV	Tas2r103:NM_053211:exon1:c.G902T:p.R301M	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	1	0.9917177	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	134248493	12A2p6	cell line	sgMsh2	134248493	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	38	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A686G:p.N229S,Etv6:NM_001303102:exon6:c.A557G:p.N186S"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.831722816	1	0.09994817	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	38	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.836395417	1	0.09512824	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	171	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.728925614	2	0.9364043	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	134507677	12A2p6	cell line	sgMsh2	134507677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	93	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon6:c.A982G:p.T328A	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9992875	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	134718109	12A2p6	cell line	sgMsh2	134718109	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	63	0	0	NA	exonic	Dusp16	synonymous SNV	Dusp16:NM_130447:exon7:c.T1758C:p.S586S	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9961974	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr6	135106215	12A2p6	cell line	sgMsh2	135106215	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	242	0	0	NA	exonic	Gprc5d	synonymous SNV	Gprc5d:NM_001205396:exon4:c.A1014C:p.P338P	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	1	0.999984	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr6	135106258	12A2p6	cell line	sgMsh2	135106258	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	190	0	0	NA	exonic	Gprc5d	stoploss	Gprc5d:NM_053118:exon3:c.A903C:p.X301C	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.841068017	1	0.9663165	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	135116037	12A2p6	cell line	sgMsh2	135116037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	73	0	0	NA	exonic	Gprc5d	nonsynonymous SNV	"Gprc5d:NM_001205396:exon2:c.A871G:p.M291V,Gprc5d:NM_053118:exon2:c.A871G:p.M291V"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.939192619	1	0.9914931	ATC	nonsynonymous	ATCC	8	ATCCATCC	NA
M7_p20	chr6	136044278	12A2p6	cell line	sgMsh2	136044278	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	73	0	0	NA	exonic	Grin2b	stopgain	"Grin2b:NM_001363750:exon4:c.T24A:p.C8X,Grin2b:NM_008171:exon4:c.T24A:p.C8X"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.49529561	2	0.9802244	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	136651815	12A2p6	cell line	sgMsh2	136651815	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	78	0	0	NA	exonic	Plbd1	nonsynonymous SNV	Plbd1:NM_025806:exon2:c.T254C:p.I85T	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9785429	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	137056311	12A2p6	cell line	sgMsh2	137056311	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	124	0	0	NA	exonic	Rerg	nonsynonymous SNV	"Rerg:NM_001164214:exon4:c.C365T:p.A122V,Rerg:NM_001164212:exon5:c.C422T:p.A141V,Rerg:NM_181988:exon5:c.C422T:p.A141V"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.892466618	1	0.9923607	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	138377245	12A2p6	cell line	sgMsh2	138377245	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	185	0	0	NA	exonic	Lmo3	nonsynonymous SNV	"Lmo3:NM_001356305:exon3:c.A287C:p.N96T,Lmo3:NM_001356306:exon3:c.A287C:p.N96T,Lmo3:NM_001356307:exon3:c.A320C:p.N107T,Lmo3:NM_207222:exon4:c.A287C:p.N96T"	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999958	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	138657515	12A2p6	cell line	sgMsh2	138657515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	132	0	0	NA	exonic	Igbp1b	synonymous SNV	Igbp1b:NM_015777:exon1:c.A930G:p.Q310Q	6qG1	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.780324215	1	0.6184524	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	139967917	12A2p6	cell line	sgMsh2	139967917	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	167	0	0	NA	exonic	Pik3c2g	nonsynonymous SNV	Pik3c2g:NM_011084:exon16:c.T1936C:p.Y646H	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.392498408	3	0.9600435	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	140042074	12A2p6	cell line	sgMsh2	140042074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	262	0	0	NA	exonic	Capza3	nonsynonymous SNV	Capza3:NM_007605:exon1:c.A398G:p.Y133C	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.929847418	1	0.9999838	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	140643981	12A2p6	cell line	sgMsh2	140643981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	404	0	0	NA	exonic	Aebp2	nonsynonymous SNV	"Aebp2:NM_001005605:exon5:c.T1187C:p.L396P,Aebp2:NM_001309436:exon5:c.T521C:p.L174P,Aebp2:NM_001309437:exon5:c.T521C:p.L174P,Aebp2:NM_009637:exon5:c.T1187C:p.L396P,Aebp2:NM_178803:exon5:c.T521C:p.L174P"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	141481133	12A2p6	cell line	sgMsh2	141481133	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	125	0	0	NA	exonic	Pde3a	synonymous SNV	Pde3a:NM_018779:exon9:c.T2019A:p.A673A	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9998809	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr6	141812743	12A2p6	cell line	sgMsh2	141812743	A	-	Deletion	Mutect2;Vardict	2	0.166	222	0	0	NA	exonic	Slco1a4	stopgain	"Slco1a4:NM_001355577:exon13:c.1541delT:p.L514fs*0,Slco1a4:NM_030687:exon14:c.1541delT:p.L514fs*0"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.775651615	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
M7_p20	chr6	141908929	12A2p6	cell line	sgMsh2	141908929	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	495	0	0	NA	exonic	Slco1a1	synonymous SNV	Slco1a1:NM_013797:exon14:c.A1995G:p.E665E	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.775651615	2	0.989293	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr6	141918548	12A2p6	cell line	sgMsh2	141918548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	219	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon11:c.A1525G:p.K509E	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.883121418	1	0.9983368	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	141936429	12A2p6	cell line	sgMsh2	141936429	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	864	0	0	NA	exonic	Slco1a1	nonsynonymous SNV	Slco1a1:NM_013797:exon4:c.A413G:p.Q138R	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.686872214	2	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	141972220	12A2p6	cell line	sgMsh2	141972220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	161	0	0	NA	exonic	Gm6614	synonymous SNV	Gm6614:NM_001081318:exon14:c.T1929C:p.D643D	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.593420212	2	0.9998929	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr6	142003500	12A2p6	cell line	sgMsh2	142003500	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	165	0	0	NA	exonic	Gm6614	nonsynonymous SNV	Gm6614:NM_001081318:exon2:c.T149C:p.L50P	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	0.9999873	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	142089812	12A2p6	cell line	sgMsh2	142089812	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	182	0	0	NA	exonic	Slco1a6	nonsynonymous SNV	"Slco1a6:NM_001381930:exon13:c.T1785G:p.S595R,Slco1a6:NM_023718:exon14:c.T1785G:p.S595R"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.696217414	2	0.9920783	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	142103105	12A2p6	cell line	sgMsh2	142103105	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	357	0	0	NA	exonic	Slco1a6	synonymous SNV	"Slco1a6:NM_001381930:exon8:c.T948C:p.P316P,Slco1a6:NM_023718:exon9:c.T948C:p.P316P"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.803687216	1	0.5970023	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr6	142367356	12A2p6	cell line	sgMsh2	142367356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	284	0	0	NA	exonic	Recql	synonymous SNV	"Recql:NM_001204906:exon10:c.T1134C:p.I378I,Recql:NM_001204907:exon10:c.T1134C:p.I378I,Recql:NM_001355511:exon10:c.T1134C:p.I378I,Recql:NM_023042:exon10:c.T1134C:p.I378I"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	1	1	1.74E-08	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr6	142645892	12A2p6	cell line	sgMsh2	142645892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	298	0	0	NA	exonic	Abcc9	synonymous SNV	"Abcc9:NM_001044720:exon20:c.A2370G:p.G790G,Abcc9:NM_001310143:exon20:c.A2370G:p.G790G,Abcc9:NM_021042:exon20:c.A2304G:p.G768G,Abcc9:NM_011511:exon21:c.A2409G:p.G803G,Abcc9:NM_021041:exon21:c.A2409G:p.G803G"	6qG2	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.883121418	1	0.9996535	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.384	265	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M7_p20	chr6	146180313	12A2p6	cell line	sgMsh2	146180313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	258	0	0	NA	exonic	Itpr2	nonsynonymous SNV	"Itpr2:NM_010586:exon48:c.T6713C:p.V2238A,Itpr2:NM_019923:exon49:c.T6812C:p.V2271A"	6qG3	chr6-3373003-148425959	5	4	1	0.9	4.205340083	NA	1	0.752288615	2	0.9622798	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1662	349	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M7_p20	chr6	149044772	12A2p6	cell line	sgMsh2	149044772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	exonic	Dennd5b	nonsynonymous SNV	Dennd5b:NM_177192:exon5:c.T1340C:p.L447P	6qG3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	206	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	3653236	12A2p6	cell line	sgMsh2	3653236	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	126	0	0	NA	exonic	Cnot3	stopgain	Cnot3:NM_146176:exon8:c.G520T:p.E174X	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998874	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	3653248	12A2p6	cell line	sgMsh2	3653248	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	139	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.T532C:p.Y178H	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9997782	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	3692095	12A2p6	cell line	sgMsh2	3692095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	122	0	0	NA	exonic	Mboat7	synonymous SNV	Mboat7:NM_029934:exon2:c.A21G:p.T7T	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998592	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr7	4238628	12A2p6	cell line	sgMsh2	4238628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	114	0	0	NA	exonic	Lilra5	nonsynonymous SNV	Lilra5:NM_001081239:exon4:c.T425C:p.L142P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	0.869103617	1	0.9784947	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	4521893	12A2p6	cell line	sgMsh2	4521893	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	22	0	0	NA	exonic	Tnni3	nonsynonymous SNV	Tnni3:NM_009406:exon3:c.C34A:p.P12T	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9635712	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	4891577	12A2p6	cell line	sgMsh2	4891577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	82	0	0	NA	exonic	Isoc2a	synonymous SNV	Isoc2a:NM_001101598:exon3:c.T258C:p.S86S	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr7	5008518	12A2p6	cell line	sgMsh2	5008518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	17	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A1000G:p.T334A,Fiz1:NM_001110329:exon3:c.A1000G:p.T334A,Fiz1:NM_001110330:exon3:c.A1000G:p.T334A,Fiz1:NM_001360241:exon3:c.A1000G:p.T334A,Fiz1:NM_001360242:exon3:c.A1000G:p.T334A,Fiz1:NM_001360243:exon3:c.A1000G:p.T334A,Fiz1:NM_011813:exon3:c.A1000G:p.T334A"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	2	1	1	0.9523583	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	5008766	12A2p6	cell line	sgMsh2	5008766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	45	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.A752G:p.K251R,Fiz1:NM_001110329:exon3:c.A752G:p.K251R,Fiz1:NM_001110330:exon3:c.A752G:p.K251R,Fiz1:NM_001360241:exon3:c.A752G:p.K251R,Fiz1:NM_001360242:exon3:c.A752G:p.K251R,Fiz1:NM_001360243:exon3:c.A752G:p.K251R,Fiz1:NM_011813:exon3:c.A752G:p.K251R"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9653932	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	5031599	12A2p6	cell line	sgMsh2	5031599	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.384	12	0	0	NA	exonic	Zfp865	nonsynonymous SNV	Zfp865:NM_001033383:exon2:c.T2582C:p.L861P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	2	1	1	0.9377897	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	5075496	12A2p6	cell line	sgMsh2	5075496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	73	0	0	NA	exonic	U2af2	nonsynonymous SNV	"U2af2:NM_001205231:exon11:c.T1073C:p.L358P,U2af2:NM_133671:exon11:c.T1061C:p.L354P"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9978227	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	5410476	12A2p6	cell line	sgMsh2	5410476	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	183	0	0	NA	exonic	Vmn1r58	nonsynonymous SNV	Vmn1r58:NM_030739:exon2:c.A754G:p.I252V	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999954	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	6316961	12A2p6	cell line	sgMsh2	6316961	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	142	0	0	NA	exonic	Zfp583	nonsynonymous SNV	Zfp583:NM_001033249:exon5:c.T1051C:p.Y351H	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	0.925174818	1	0.9987816	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	6710043	12A2p6	cell line	sgMsh2	6710043	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	206	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.C2179T:p.P727S	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	7889095	12A2p6	cell line	sgMsh2	7889095	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.2	99	0	0	NA	exonic	Vmn2r36	nonsynonymous SNV	Vmn2r36:NM_001105068:exon3:c.A1213G:p.I405V	7qA1	chr7-7312117-10050631	8.44299262	6.44299262	2	0.9	4.205340083	NA	2	0.934520019	1	0.9962492	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	9027692	12A2p6	cell line	sgMsh2	9027692	T	C	SNV	Mutect2;MuSe;Vardict	3	0.109	117	0	0	NA	exonic	Vmn2r39	nonsynonymous SNV	"Vmn2r39:NM_001105071:exon2:c.A376G:p.I126V,Vmn2r39:NM_001385077:exon2:c.A376G:p.I126V"	7qA1	chr7-7312117-10050631	8.44299262	6.44299262	2	0.9	4.205340083	NA	1	0.50931341	2	0.9988979	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	10037612	12A2p6	cell line	sgMsh2	10037612	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	330	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.A2209T:p.I737F	7qA1	chr7-7312117-10050631	8.44299262	6.44299262	2	0.9	4.205340083	NA	4	1	1	2.25E-09	ATG	nonsynonymous	ATG	9	ATGATGATG	NA
M7_p20	chr7	10100105	12A2p6	cell line	sgMsh2	10100105	A	C	SNV	Mutect2;Vardict	2	0.078	401	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.T1005G:p.N335K	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.364462807	3	4.99E-08	AAT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr7	10168971	12A2p6	cell line	sgMsh2	10168971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	388	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon4:c.A1529G:p.K510R	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.05E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	10274817	12A2p6	cell line	sgMsh2	10274817	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	140	0	0	NA	exonic	Vmn1r66	synonymous SNV	Vmn1r66:NM_134230:exon1:c.G288A:p.R96R	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999485	TCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	10447657	12A2p6	cell line	sgMsh2	10447657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	240	0	0	NA	exonic	Vmn1r67	nonsynonymous SNV	Vmn1r67:NM_134229:exon1:c.T847C:p.F283L	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	10715024	12A2p6	cell line	sgMsh2	10715024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	233	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon4:c.A1153G:p.N385D,Nlrp4b:NM_172481:exon4:c.A1153G:p.N385D"	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	10748632	12A2p6	cell line	sgMsh2	10748632	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	94	0	0	NA	exonic	Vmn1r71	nonsynonymous SNV	Vmn1r71:NM_145848:exon1:c.C128T:p.T43I	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	11669849	12A2p6	cell line	sgMsh2	11669849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	218	0	0	NA	exonic	Vmn1r72	nonsynonymous SNV	Vmn1r72:NM_145843:exon1:c.A671G:p.Y224C	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	12304990	12A2p6	cell line	sgMsh2	12304990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	192	0	0	NA	exonic	Vmn1r82	synonymous SNV	Vmn1r82:NM_134234:exon1:c.A186G:p.G62G	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	GAA	synonymous	NA	NA	NA	NA
M7_p20	chr7	12305304	12A2p6	cell line	sgMsh2	12305304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	351	0	0	NA	exonic	Vmn1r82	nonsynonymous SNV	Vmn1r82:NM_134234:exon1:c.A500G:p.Y167C	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.39E-09	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	12632429	12A2p6	cell line	sgMsh2	12632429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	527	0	0	NA	exonic	Vmn2r54	nonsynonymous SNV	Vmn2r54:NM_001384946:exon3:c.T793C:p.C265R	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	12670730	12A2p6	cell line	sgMsh2	12670730	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	343	0	0	NA	exonic	Vmn2r55	nonsynonymous SNV	"Vmn2r55:NM_001104645:exon2:c.T745C:p.F249L,Vmn2r55:NM_001374650:exon3:c.T961C:p.F321L"	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.60E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	12848937	12A2p6	cell line	sgMsh2	12848937	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	129	0	0	NA	exonic	Zfp110	nonsynonymous SNV	"Zfp110:NM_001360576:exon8:c.A1511G:p.K504R,Zfp110:NM_022981:exon8:c.A1511G:p.K504R"	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999045	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	12890211	12A2p6	cell line	sgMsh2	12890211	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	184	0	0	NA	exonic	Zfp128	nonsynonymous SNV	Zfp128:NM_153802:exon4:c.A505C:p.S169R	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999956	AAG	nonsynonymous	TCAAAG	12	TCAAAGTCAAAG	NA
M7_p20	chr7	13261283	12A2p6	cell line	sgMsh2	13261283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	93	0	0	NA	exonic	Zswim9	nonsynonymous SNV	Zswim9:NM_177312:exon4:c.A946G:p.I316V	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	13292474	12A2p6	cell line	sgMsh2	13292474	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	89	0	0	NA	exonic	Lig1	synonymous SNV	"Lig1:NM_001083188:exon11:c.C867A:p.A289A,Lig1:NM_001199310:exon11:c.C867A:p.A289A,Lig1:NM_010715:exon11:c.C867A:p.A289A"	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.999109	CCG	synonymous	NA	NA	NA	NA
M7_p20	chr7	13307544	12A2p6	cell line	sgMsh2	13307544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	58	0	0	NA	exonic	Lig1	nonsynonymous SNV	"Lig1:NM_001083188:exon25:c.T2252C:p.V751A,Lig1:NM_001199310:exon25:c.T2252C:p.V751A,Lig1:NM_010715:exon25:c.T2252C:p.V751A"	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9949767	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	13931730	12A2p6	cell line	sgMsh2	13931730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	856	0	0	NA	exonic	Sult2a4	stopgain	Sult2a4:NM_001101534:exon4:c.G507A:p.W169X	7qA1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	16865872	12A2p6	cell line	sgMsh2	16865872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	103	0	0	NA	exonic	Prkd2	synonymous SNV	"Prkd2:NM_178900:exon16:c.T2259C:p.N753N,Prkd2:NM_001252458:exon17:c.T2259C:p.N753N"	7qA2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995926	ATG	synonymous	GAGGAC	12	GAGGACGAGGAC	NA
M7_p20	chr7	17917286	12A2p6	cell line	sgMsh2	17917286	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	239	0	0	NA	exonic	Gm5155	synonymous SNV	Gm5155:NM_001378684:exon9:c.T2721C:p.D907D	7qA2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	ATA	synonymous	T	5	TTTTT	NA
M7_p20	chr7	18013057	12A2p6	cell line	sgMsh2	18013057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	136	0	0	NA	exonic	Ceacam13	stopgain	"Ceacam13:NM_027210:exon3:c.T434A:p.L145X,Ceacam13:NM_028171:exon3:c.T434A:p.L145X"	7qA2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999356	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	18069123	12A2p6	cell line	sgMsh2	18069123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	exonic	Ceacam12	synonymous SNV	"Ceacam12:NM_001162523:exon3:c.T453C:p.P151P,Ceacam12:NM_001162524:exon3:c.T453C:p.P151P,Ceacam12:NM_026087:exon3:c.T453C:p.P151P"	7qA2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9998406	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr7	18529526	12A2p6	cell line	sgMsh2	18529526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	336	0	0	NA	exonic	Psg25	nonsynonymous SNV	Psg25:NM_054060:exon2:c.T371C:p.I124T	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.89E-09	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	18612054	12A2p6	cell line	sgMsh2	18612054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	602	0	0	NA	exonic	Psg23	nonsynonymous SNV	Psg23:NM_020261:exon3:c.T715C:p.Y239H	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	18681013	12A2p6	cell line	sgMsh2	18681013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	506	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.T956C:p.I319T	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.067	507	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.313064206	3	1	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	19371223	12A2p6	cell line	sgMsh2	19371223	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	38	0	0	NA	exonic	Ppp1r13l	nonsynonymous SNV	Ppp1r13l:NM_001010836:exon7:c.A919G:p.T307A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.977818	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	19764094	12A2p6	cell line	sgMsh2	19764094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	65	0	0	NA	exonic	Bcam	nonsynonymous SNV	Bcam:NM_020486:exon8:c.T1003C:p.Y335H	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	19944783	12A2p6	cell line	sgMsh2	19944783	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	25	0	0	NA	exonic	Igsf23	synonymous SNV	"Igsf23:NM_001364024:exon2:c.A219G:p.E73E,Igsf23:NM_027308:exon2:c.A195G:p.E65E,Igsf23:NM_001364025:exon3:c.A81G:p.E27E"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9690252	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	21272384	12A2p6	cell line	sgMsh2	21272384	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	305	0	0	NA	exonic	Vmn1r125	nonsynonymous SNV	Vmn1r125:NM_001166740:exon1:c.C206T:p.T69I	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	6.06E-09	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	23541176	12A2p6	cell line	sgMsh2	23541176	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	458	0	0	NA	exonic	Vmn1r168	nonsynonymous SNV	Vmn1r168:NM_001166842:exon1:c.A457G:p.I153V	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.710235214	2	0.9999983	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	23632779	12A2p6	cell line	sgMsh2	23632779	C	-	Deletion	Strelka2;Vardict	2	0.1154	390	0	0	NA	exonic	Vmn1r171	frameshift deletion	Vmn1r171:NM_030737:exon1:c.428delC:p.K145Nfs*2	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.539218051	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M7_p20	chr7	23866409	12A2p6	cell line	sgMsh2	23866409	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	341	0	0	NA	exonic	Vmn1r177	nonsynonymous SNV	Vmn1r177:NM_206872:exon1:c.T41A:p.V14E	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8099917	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24003468	12A2p6	cell line	sgMsh2	24003468	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	421	0	0	NA	exonic	V1rd18;V1rd19	nonsynonymous SNV	"V1rd18:NM_207618:exon1:c.C358G:p.P120A,V1rd19:NM_207619:exon1:c.C358G:p.P120A"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.387825808	3	0.9999897	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24104956	12A2p6	cell line	sgMsh2	24104956	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.137	90	0	0	NA	exonic	Zfp180	nonsynonymous SNV	"Zfp180:NM_172483:exon3:c.T274C:p.F92L,Zfp180:NM_001289637:exon4:c.T727C:p.F243L,Zfp180:NM_001045486:exon5:c.T799C:p.F267L,Zfp180:NM_001289640:exon5:c.T697C:p.F233L,Zfp180:NM_001289641:exon5:c.T619C:p.F207L,Zfp180:NM_001289634:exon6:c.T727C:p.F243L"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.640146213	2	0.9484023	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24140735	12A2p6	cell line	sgMsh2	24140735	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.297	198	0	0	NA	exonic	Zfp235	nonsynonymous SNV	"Zfp235:NM_019941:exon5:c.A578G:p.N193S,Zfp235:NM_001360465:exon6:c.A788G:p.N263S"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24276267	12A2p6	cell line	sgMsh2	24276267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	103	0	0	NA	exonic	Zfp93	nonsynonymous SNV	"Zfp93:NM_009567:exon4:c.A1676G:p.H559R,Zfp93:NM_001360227:exon5:c.A1730G:p.H577R"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9979137	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24515505	12A2p6	cell line	sgMsh2	24515505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	41	0	0	NA	exonic	Zfp428	nonsynonymous SNV	"Zfp428:NM_001290461:exon3:c.T545C:p.M182T,Zfp428:NM_146183:exon3:c.T506C:p.M169T,Zfp428:NM_175142:exon3:c.T545C:p.M182T"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9871049	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	24722828	12A2p6	cell line	sgMsh2	24722828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	127	0	0	NA	exonic	Lypd11	synonymous SNV	"Lypd11:NM_177593:exon4:c.A495G:p.S165S,Lypd11:NM_001381982:exon6:c.A651G:p.S217S"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998935	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	91	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992032	CGC	synonymous	C	5	CCCCC	NA
M7_p20	chr7	25271203	12A2p6	cell line	sgMsh2	25271203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	30	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.T358C:p.Y120H	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9764031	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	25271985	12A2p6	cell line	sgMsh2	25271985	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	16	0	0	NA	exonic	Cic	synonymous SNV	Cic:NM_001302811:exon2:c.T1140A:p.A380A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9497451	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	36	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9830153	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	25307111	12A2p6	cell line	sgMsh2	25307111	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	189	0	0	NA	exonic	Tmem145	nonsynonymous SNV	Tmem145:NM_183311:exon2:c.T143C:p.F48S	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999967	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	25338521	12A2p6	cell line	sgMsh2	25338521	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.333	16	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon14:c.A2461G:p.T821A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9497451	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	25395550	12A2p6	cell line	sgMsh2	25395550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	99	0	0	NA	exonic	Lipe	synonymous SNV	Lipe:NM_010719:exon1:c.A60G:p.E20E	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994905	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	25538649	12A2p6	cell line	sgMsh2	25538649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	235	0	0	NA	exonic	Ceacam2	nonsynonymous SNV	"Ceacam2:NM_001113368:exon2:c.A349G:p.T117A,Ceacam2:NM_001113369:exon2:c.A349G:p.T117A,Ceacam2:NM_007543:exon2:c.A349G:p.T117A"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	25733271	12A2p6	cell line	sgMsh2	25733271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	296	0	0	NA	exonic	Hnrnpul1	synonymous SNV	"Hnrnpul1:NM_001360789:exon9:c.T1065C:p.G355G,Hnrnpul1:NM_144922:exon9:c.T1365C:p.G455G"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9999881	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	25761460	12A2p6	cell line	sgMsh2	25761460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	134	0	0	NA	exonic	Axl	nonsynonymous SNV	"Axl:NM_001190975:exon16:c.A1832G:p.K611R,Axl:NM_001190974:exon17:c.A2096G:p.K699R,Axl:NM_009465:exon18:c.A2123G:p.K708R"	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.999928	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	26080708	12A2p6	cell line	sgMsh2	26080708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	159	0	0	NA	exonic	Cyp2b13	synonymous SNV	Cyp2b13:NM_007813:exon2:c.T282C:p.A94A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999822	CTT	synonymous	T	5	TTTTT	NA
M7_p20	chr7	26808945	12A2p6	cell line	sgMsh2	26808945	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	99	0	0	NA	exonic	Cyp2g1	nonsynonymous SNV	Cyp2g1:NM_013809:exon1:c.T19A:p.F7I	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9923746	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	27157598	12A2p6	cell line	sgMsh2	27157598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	132	0	0	NA	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon7:c.A986G:p.Y329C	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999195	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	27157834	12A2p6	cell line	sgMsh2	27157834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	108	0	0	NA	exonic	Cyp2t4	nonsynonymous SNV	Cyp2t4:NM_001100184:exon8:c.T1121C:p.V374A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996919	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	27240043	12A2p6	cell line	sgMsh2	27240043	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	132	0	0	NA	exonic	Coq8b	nonsynonymous SNV	Coq8b:NM_133770:exon7:c.A497G:p.N166S	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9587663	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	27516896	12A2p6	cell line	sgMsh2	27516896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	40	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.A1238C:p.E413A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9863733	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	27528950	12A2p6	cell line	sgMsh2	27528950	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	27	0	0	NA	exonic	Hipk4	nonsynonymous SNV	Hipk4:NM_001033315:exon3:c.T824C:p.V275A	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9722123	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	28093319	12A2p6	cell line	sgMsh2	28093319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	101	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon8:c.A2747G:p.N916S	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	28104847	12A2p6	cell line	sgMsh2	28104847	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	170	0	0	NA	exonic	Fcgbp	nonsynonymous SNV	Fcgbp:NM_001122603:exon14:c.C5379G:p.N1793K	7qA3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999904	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	28540915	12A2p6	cell line	sgMsh2	28540915	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	128	0	0	NA	exonic	Sycn	synonymous SNV	Sycn:NM_026716:exon1:c.C6A:p.S2S	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	CCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	29045605	12A2p6	cell line	sgMsh2	29045605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	116	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon82:c.T11601C:p.T3867T	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	29061567	12A2p6	cell line	sgMsh2	29061567	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	39	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon65:c.A9629C:p.E3210A	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	29074854	12A2p6	cell line	sgMsh2	29074854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	38	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon44:c.T7154C:p.I2385T	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	29087403	12A2p6	cell line	sgMsh2	29087403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	28	0	0	NA	exonic	Ryr1	synonymous SNV	Ryr1:NM_009109:exon33:c.A4764G:p.P1588P	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9736839	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	29096187	12A2p6	cell line	sgMsh2	29096187	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.396	67	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon25:c.T3277C:p.F1093L	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9969573	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	18	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9548392	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	29185076	12A2p6	cell line	sgMsh2	29185076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	313	0	0	NA	exonic	Catsperg1	nonsynonymous SNV	"Catsperg1:NM_001164658:exon24:c.T2678C:p.V893A,Catsperg1:NM_001368407:exon24:c.T2837C:p.V946A"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	2.08E-08	CAC	nonsynonymous	ACC	16	ACCACCACCCACCACC	NA
M7_p20	chr7	29225257	12A2p6	cell line	sgMsh2	29225257	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	80	0	0	NA	exonic	Kcnk6	nonsynonymous SNV	Kcnk6:NM_001033525:exon3:c.T721C:p.Y241H	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9966993	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30057402	12A2p6	cell line	sgMsh2	30057402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	42	0	0	NA	exonic	Zfp82	nonsynonymous SNV	"Zfp82:NM_001252519:exon6:c.T254C:p.L85P,Zfp82:NM_177889:exon7:c.T344C:p.L115P"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30190083	12A2p6	cell line	sgMsh2	30190083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	162	0	0	NA	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon9:c.C690T:p.I230I	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.999985	TGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	30190555	12A2p6	cell line	sgMsh2	30190555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	98	0	0	NA	exonic	Capns1	synonymous SNV	Capns1:NM_009795:exon8:c.T528C:p.A176A	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.626128412	2	0.9775894	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	30241548	12A2p6	cell line	sgMsh2	30241548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	57	0	0	NA	exonic	Wdr62	nonsynonymous SNV	Wdr62:NM_146186:exon31:c.A3854G:p.N1285S	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9946893	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30448368	12A2p6	cell line	sgMsh2	30448368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	43	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon15:c.A1854G:p.P618P	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9884441	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	30466064	12A2p6	cell line	sgMsh2	30466064	T	C	SNV	Mutect2;Strelka2	2	0.185	22	0	0	NA	exonic	Nphs1	nonsynonymous SNV	Nphs1:NM_019459:exon14:c.T1855C:p.S619P	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9133194	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30540786	12A2p6	cell line	sgMsh2	30540786	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	115	0	0	NA	exonic	Proser3	nonsynonymous SNV	"Proser3:NM_001374643:exon9:c.T892C:p.C298R,Proser3:NM_001382459:exon10:c.T892C:p.C298R,Proser3:NM_183321:exon10:c.T892C:p.C298R"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997917	CAG	nonsynonymous	GTGCA	12	GTGCAGTGCAGT	NA
M7_p20	chr7	30569294	12A2p6	cell line	sgMsh2	30569294	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	296	0	0	NA	exonic	Kmt2b	nonsynonymous SNV	"Kmt2b:NM_001290573:exon37:c.T8036G:p.I2679S,Kmt2b:NM_029274:exon37:c.T8009G:p.I2670S"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	9.37E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30736625	12A2p6	cell line	sgMsh2	30736625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	444	0	0	NA	exonic	Gapdhs	nonsynonymous SNV	"Gapdhs:NM_001290631:exon4:c.A539G:p.Y180C,Gapdhs:NM_008085:exon4:c.A533G:p.Y178C"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30752922	12A2p6	cell line	sgMsh2	30752922	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	92	0	0	NA	exonic	Sbsn	nonsynonymous SNV	Sbsn:NM_172205:exon1:c.T1361C:p.M454T	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9978227	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30790603	12A2p6	cell line	sgMsh2	30790603	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	79	0	0	NA	exonic	Krtdap	nonsynonymous SNV	"Krtdap:NM_001364009:exon4:c.C216A:p.D72E,Krtdap:NM_001364011:exon4:c.C216A:p.D72E,Krtdap:NM_001033131:exon5:c.C258A:p.D86E,Krtdap:NM_001364010:exon5:c.C258A:p.D86E"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9984424	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30877545	12A2p6	cell line	sgMsh2	30877545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	232	0	0	NA	exonic	Cd22	synonymous SNV	"Cd22:NM_009845:exon3:c.T336C:p.C112C,Cd22:NM_001043317:exon5:c.T336C:p.C112C"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999996	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	30909069	12A2p6	cell line	sgMsh2	30909069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	52	0	0	NA	exonic	Mag	nonsynonymous SNV	"Mag:NM_001346085:exon5:c.A619G:p.T207A,Mag:NM_001346088:exon5:c.A619G:p.T207A,Mag:NM_001346084:exon6:c.A619G:p.T207A,Mag:NM_001346086:exon6:c.A619G:p.T207A,Mag:NM_001346087:exon6:c.A619G:p.T207A,Mag:NM_001346089:exon6:c.A493G:p.T165A,Mag:NM_001369262:exon6:c.A619G:p.T207A,Mag:NM_010758:exon6:c.A619G:p.T207A"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.992988	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	30922524	12A2p6	cell line	sgMsh2	30922524	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	317	0	0	NA	exonic	Hamp2	nonsynonymous SNV	Hamp2:NM_183257:exon3:c.T236G:p.I79S	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	3.59E-09	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	34227208	12A2p6	cell line	sgMsh2	34227208	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	80	0	0	NA	exonic	Gpi1	synonymous SNV	Gpi1:NM_008155:exon4:c.G312T:p.R104R	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.998527	TCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	223	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	216	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7_p20	chr7	34351479	12A2p6	cell line	sgMsh2	34351479	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	82	0	0	NA	exonic	Lsm14a	nonsynonymous SNV	"Lsm14a:NM_001360656:exon8:c.A995C:p.N332T,Lsm14a:NM_001360654:exon9:c.A1172C:p.N391T,Lsm14a:NM_001360655:exon9:c.A1169C:p.N390T,Lsm14a:NM_025948:exon9:c.A1172C:p.N391T"	7qB1	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9986826	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	35206103	12A2p6	cell line	sgMsh2	35206103	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	133	0	0	NA	exonic	Lrp3	nonsynonymous SNV	Lrp3:NM_001024707:exon4:c.A257G:p.N86S	7qB2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999239	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	35429212	12A2p6	cell line	sgMsh2	35429212	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	115	0	0	NA	exonic	Cep89	stopgain	Cep89:NM_028120:exon16:c.A1789T:p.K597X	7qB2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.984704	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	36771832	12A2p6	cell line	sgMsh2	36771832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Tshz3	stoploss	Tshz3:NM_172298:exon2:c.A3245G:p.X1082W	7qB2	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9982584	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	38106650	12A2p6	cell line	sgMsh2	38106650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	190	0	0	NA	exonic	Ccne1	synonymous SNV	Ccne1:NM_007633:exon3:c.A48G:p.E16E	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9999786	CTT	synonymous	CTT	9	CTTCTTCTT	NA
M7_p20	chr7	40993301	12A2p6	cell line	sgMsh2	40993301	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	220	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G393A:p.L131L	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	TGG	synonymous	G	5	GGGGG	NA
M7_p20	chr7	41286204	12A2p6	cell line	sgMsh2	41286204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	274	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon2:c.A129G:p.P43P	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.742943415	2	0.9873405	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	41862058	12A2p6	cell line	sgMsh2	41862058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	228	0	0	NA	exonic	Vmn2r58	synonymous SNV	Vmn2r58:NM_001105055:exon4:c.C1320T:p.F440F	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	41864200	12A2p6	cell line	sgMsh2	41864200	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	517	0	0	NA	exonic	Vmn2r58	nonsynonymous SNV	Vmn2r58:NM_001105055:exon3:c.A1018G:p.T340A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	42042443	12A2p6	cell line	sgMsh2	42042443	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	406	0	0	NA	exonic	Vmn2r59	synonymous SNV	Vmn2r59:NM_001105056:exon5:c.C1629T:p.P543P	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.02E-09	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	42195225	12A2p6	cell line	sgMsh2	42195225	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	522	0	0	NA	exonic	Vmn2r60	nonsynonymous SNV	Vmn2r60:NM_001105057:exon6:c.G2011T:p.V671L	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9999996	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	43442166	12A2p6	cell line	sgMsh2	43442166	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	139	0	0	NA	exonic	Cldnd2	nonsynonymous SNV	Cldnd2:NM_028849:exon3:c.A170C:p.N57T	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9995955	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	43464830	12A2p6	cell line	sgMsh2	43464830	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	29	0	0	NA	exonic	Vsig10l	nonsynonymous SNV	"Vsig10l:NM_001290316:exon3:c.A575G:p.Q192R,Vsig10l:NM_001368881:exon3:c.A881G:p.Q294R"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9750797	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	43938521	12A2p6	cell line	sgMsh2	43938521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	113	0	0	NA	exonic	Klk15	synonymous SNV	Klk15:NM_174865:exon4:c.G372A:p.A124A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.705562614	2	0.8696572	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr7	44361088	12A2p6	cell line	sgMsh2	44361088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	85	0	0	NA	exonic	1700008O03Rik	synonymous SNV	1700008O03Rik:NM_027049:exon5:c.T357C:p.N119N	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988859	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr7	44461349	12A2p6	cell line	sgMsh2	44461349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	55	0	0	NA	exonic	Lrrc4b	nonsynonymous SNV	Lrrc4b:NM_198250:exon3:c.A644G:p.N215S	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.649491413	2	9.18E-05	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	44542145	12A2p6	cell line	sgMsh2	44542145	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	20	0	0	NA	exonic	Pold1	nonsynonymous SNV	Pold1:NM_011131:exon4:c.T416C:p.I139T	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9404297	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	44595658	12A2p6	cell line	sgMsh2	44595658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	151	0	0	NA	exonic	Kcnc3	synonymous SNV	"Kcnc3:NM_001290682:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385625:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385626:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385627:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385628:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385629:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385630:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385631:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385632:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385633:exon2:c.T1371C:p.A457A,Kcnc3:NM_001385634:exon2:c.T276C:p.A92A,Kcnc3:NM_001385635:exon2:c.T276C:p.A92A,Kcnc3:NM_001385636:exon2:c.T276C:p.A92A,Kcnc3:NM_001385637:exon2:c.T276C:p.A92A,Kcnc3:NM_008422:exon2:c.T1371C:p.A457A"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9936057	CTC	synonymous	G	5	GGGGG	NA
M7_p20	chr7	44839809	12A2p6	cell line	sgMsh2	44839809	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	52	0	0	NA	exonic	Il4i1;Il4i1b	stopgain	"Il4i1:NM_010215:exon8:c.997delT:p.L333fs*0,Il4i1b:NM_001171024:exon9:c.1021delT:p.L341fs*0"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.883121418	NA	NA	CTT	nonsynonymous	NA	NA	NA	-1
M7_p20	chr7	44854096	12A2p6	cell line	sgMsh2	44854096	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.25	16	0	0	NA	exonic	Akt1s1	nonsynonymous SNV	"Akt1s1:NM_001290695:exon3:c.G315T:p.E105D,Akt1s1:NM_001253920:exon4:c.G618T:p.E206D,Akt1s1:NM_001290694:exon4:c.G696T:p.E232D,Akt1s1:NM_001382480:exon4:c.G618T:p.E206D,Akt1s1:NM_001382481:exon4:c.G618T:p.E206D,Akt1s1:NM_001382482:exon4:c.G618T:p.E206D,Akt1s1:NM_001382483:exon4:c.G618T:p.E206D,Akt1s1:NM_026270:exon4:c.G618T:p.E206D,Akt1s1:NM_001382484:exon5:c.G618T:p.E206D"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9497451	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	44901059	12A2p6	cell line	sgMsh2	44901059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	50	0	0	NA	exonic	Ap2a1	synonymous SNV	"Ap2a1:NM_001077264:exon22:c.T2718C:p.G906G,Ap2a1:NM_007458:exon23:c.T2784C:p.G928G"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	44905812	12A2p6	cell line	sgMsh2	44905812	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	194	0	0	NA	exonic	Ap2a1	nonsynonymous SNV	"Ap2a1:NM_001077264:exon11:c.T1328C:p.V443A,Ap2a1:NM_007458:exon11:c.T1328C:p.V443A"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.997934	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	44943392	12A2p6	cell line	sgMsh2	44943392	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	22	0	0	NA	exonic	Tsks	frameshift deletion	"Tsks:NM_001077591:exon1:c.109delG:p.V39fs*0,Tsks:NM_011651:exon1:c.109delG:p.V39fs*0"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M7_p20	chr7	45002309	12A2p6	cell line	sgMsh2	45002309	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	84	0	0	NA	exonic	Irf3	nonsynonymous SNV	Irf3:NM_016849:exon8:c.T1223C:p.V408A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9988219	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45018154	12A2p6	cell line	sgMsh2	45018154	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	16	0	0	NA	exonic	Rras	nonsynonymous SNV	Rras:NM_009101:exon1:c.A139G:p.I47V	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9497451	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45088550	12A2p6	cell line	sgMsh2	45088550	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	54	0	0	NA	exonic	Rcn3	synonymous SNV	"Rcn3:NM_001355045:exon3:c.G393A:p.G131G,Rcn3:NM_026555:exon3:c.G393A:p.G131G"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9937253	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	45127567	12A2p6	cell line	sgMsh2	45127567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	119	0	0	NA	exonic	Rpl13a	nonsynonymous SNV	Rpl13a:NM_009438:exon2:c.T17C:p.V6A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998334	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45353587	12A2p6	cell line	sgMsh2	45353587	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	36	0	0	NA	exonic	Ppfia3	nonsynonymous SNV	Ppfia3:NM_029741:exon14:c.T1597C:p.Y533H	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9671722	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45360626	12A2p6	cell line	sgMsh2	45360626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	61	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon3:c.T252C:p.A84A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9957493	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	45369292	12A2p6	cell line	sgMsh2	45369292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	exonic	Lin7b	nonsynonymous SNV	Lin7b:NM_011698:exon4:c.T287C:p.L96P	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9972888	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45516578	12A2p6	cell line	sgMsh2	45516578	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon3:c.G124A:p.D42N,Tulp2:NM_001290998:exon3:c.G88A:p.D30N,Tulp2:NM_001290999:exon3:c.G124A:p.D42N,Tulp2:NM_001045555:exon6:c.G460A:p.D154N,Tulp2:NM_008807:exon6:c.G460A:p.D154N"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.997426	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45518619	12A2p6	cell line	sgMsh2	45518619	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	101	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon5:c.T454C:p.S152P,Tulp2:NM_001290998:exon5:c.T418C:p.S140P,Tulp2:NM_001290999:exon5:c.T454C:p.S152P,Tulp2:NM_001045555:exon8:c.T790C:p.S264P,Tulp2:NM_008807:exon8:c.T790C:p.S264P"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45566174	12A2p6	cell line	sgMsh2	45566174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	129	0	0	NA	exonic	Hsd17b14	synonymous SNV	Hsd17b14:NM_025330:exon8:c.T597C:p.T199T	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	45588276	12A2p6	cell line	sgMsh2	45588276	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	61	0	0	NA	exonic	Bcat2	nonsynonymous SNV	"Bcat2:NM_001243052:exon9:c.A845T:p.K282M,Bcat2:NM_009737:exon9:c.A965T:p.K322M"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9957493	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45711648	12A2p6	cell line	sgMsh2	45711648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	104	0	0	NA	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon6:c.C931T:p.H311Y,Sphk2:NM_020011:exon6:c.C931T:p.H311Y,Sphk2:NM_203280:exon7:c.C931T:p.H311Y"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996147	TGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45712131	12A2p6	cell line	sgMsh2	45712131	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	100	0	0	NA	exonic	Sphk2	nonsynonymous SNV	"Sphk2:NM_001172561:exon5:c.G694A:p.V232M,Sphk2:NM_020011:exon5:c.G694A:p.V232M,Sphk2:NM_203280:exon6:c.G694A:p.V232M"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45723468	12A2p6	cell line	sgMsh2	45723468	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	118	0	0	NA	exonic	Fam83e	nonsynonymous SNV	Fam83e:NM_001033170:exon2:c.A502G:p.T168A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.99473	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	45834817	12A2p6	cell line	sgMsh2	45834817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	0	0	NA	exonic	Grin2d	synonymous SNV	Grin2d:NM_008172:exon10:c.C2253T:p.D751D	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9442974	CGT	synonymous	NA	NA	NA	NA
M7_p20	chr7	45918149	12A2p6	cell line	sgMsh2	45918149	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.176	49	0	0	NA	exonic	Emp3	nonsynonymous SNV	"Emp3:NM_001146346:exon5:c.T409C:p.Y137H,Emp3:NM_010129:exon5:c.T409C:p.Y137H"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.822377616	1	0.8909784	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	46259908	12A2p6	cell line	sgMsh2	46259908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	122	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon17:c.T1801C:p.S601P	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998592	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	46662185	12A2p6	cell line	sgMsh2	46662185	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	67	0	0	NA	exonic	Tph1	nonsynonymous SNV	"Tph1:NM_001136084:exon3:c.T132G:p.N44K,Tph1:NM_001276372:exon3:c.T132G:p.N44K,Tph1:NM_009414:exon3:c.T132G:p.N44K"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.770979015	1	0.74251	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	46740785	12A2p6	cell line	sgMsh2	46740785	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	180	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.T288G:p.A96A,Saa1:NM_009117:exon4:c.T288G:p.A96A"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999945	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	46740812	12A2p6	cell line	sgMsh2	46740812	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	186	0	0	NA	exonic	Saa1	synonymous SNV	"Saa1:NM_001357493:exon4:c.C261T:p.F87F,Saa1:NM_009117:exon4:c.C261T:p.F87F"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	CGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	47008133	12A2p6	cell line	sgMsh2	47008133	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	47	0	0	NA	exonic	Spty2d1	nonsynonymous SNV	Spty2d1:NM_175318:exon1:c.T2C:p.M1T	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	2	1	1	0.9907467	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	47235251	12A2p6	cell line	sgMsh2	47235251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	240	0	0	NA	exonic	Mrgpra9	nonsynonymous SNV	Mrgpra9:NM_001288801:exon2:c.A667G:p.T223A	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	47464589	12A2p6	cell line	sgMsh2	47464589	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	286	0	0	NA	exonic	Mrgpra2b	nonsynonymous SNV	"Mrgpra2b:NM_001382001:exon2:c.A397G:p.S133G,Mrgpra2b:NM_153101:exon2:c.A394G:p.S132G"	7qB3	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	1.56E-08	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	48168688	12A2p6	cell line	sgMsh2	48168688	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	177	0	0	NA	exonic	Mrgprb5	nonsynonymous SNV	Mrgprb5:NM_207538:exon1:c.T298C:p.F100L	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999935	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr7	48643213	12A2p6	cell line	sgMsh2	48643213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	134	0	0	NA	exonic	Mrgprb3	nonsynonymous SNV	Mrgprb3:NM_207537:exon1:c.T589C:p.F197L	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.98591862	1	0.9998712	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	49781143	12A2p6	cell line	sgMsh2	49781143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	18	0	0	NA	exonic	Prmt3	synonymous SNV	Prmt3:NM_133740:exon4:c.T264C:p.I88I	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9548392	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr7	51546678	12A2p6	cell line	sgMsh2	51546678	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	106	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon6:c.A314T:p.K105I,Ano5:NM_177694:exon7:c.A356T:p.K119I"	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996555	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	51574860	12A2p6	cell line	sgMsh2	51574860	T	-	Deletion	Strelka2;Vardict	2	0.2547	161	0	0	NA	exonic	Ano5	frameshift deletion	"Ano5:NM_001271879:exon14:c.1521delT:p.Y510Mfs*37,Ano5:NM_177694:exon15:c.1563delT:p.Y524Mfs*25"	7qB4	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M7_p20	chr7	55944531	12A2p6	cell line	sgMsh2	55944531	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	51	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256131:exon2:c.T89G:p.L30W,Nipa2:NM_001256130:exon3:c.T89G:p.L30W,Nipa2:NM_001256132:exon3:c.T89G:p.L30W,Nipa2:NM_023647:exon3:c.T89G:p.L30W"	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9925877	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	55979873	12A2p6	cell line	sgMsh2	55979873	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	47	0	0	NA	exonic	Nipa1	nonsynonymous SNV	Nipa1:NM_153578:exon5:c.T491C:p.L164P	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9516208	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	56085107	12A2p6	cell line	sgMsh2	56085107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	94	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon5:c.C444T:p.L148L,Herc2:NM_010418:exon5:c.C444T:p.L148L"	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993262	TCG	synonymous	NA	NA	NA	NA
M7_p20	chr7	56182642	12A2p6	cell line	sgMsh2	56182642	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	188	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon59:c.A9085G:p.M3029V,Herc2:NM_010418:exon59:c.A9085G:p.M3029V"	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999965	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	56184375	12A2p6	cell line	sgMsh2	56184375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	149	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon61:c.T9327C:p.S3109S,Herc2:NM_010418:exon61:c.T9327C:p.S3109S"	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8563158	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	56984956	12A2p6	cell line	sgMsh2	56984956	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	55	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon4:c.C478A:p.L160I	7qB5	chr7-10052711-57508330	4	2	2	0.9	4.205340083	NA	1	0.799014616	1	0.8469995	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	59276594	12A2p6	cell line	sgMsh2	59276594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	168	0	0	NA	exonic	Ube3a	synonymous SNV	"Ube3a:NM_001033962:exon4:c.A1119G:p.E373E,Ube3a:NM_011668:exon6:c.A1182G:p.E394E"	7qB5	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	62379272	12A2p6	cell line	sgMsh2	62379272	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.572	6	0	0	NA	exonic	Magel2	nonsynonymous SNV	Magel2:NM_013779:exon1:c.G1923T:p.Q641H	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9132446	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	63757608	12A2p6	cell line	sgMsh2	63757608	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.235	44	0	0	NA	exonic	Otud7a	nonsynonymous SNV	Otud7a:NM_130880:exon14:c.A1658G:p.N553S	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9890748	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	63757613	12A2p6	cell line	sgMsh2	63757613	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	43	0	0	NA	exonic	Otud7a	frameshift deletion	Otud7a:NM_130880:exon14:c.1663delA:p.N556Tfs*65	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr7	64199257	12A2p6	cell line	sgMsh2	64199257	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	92	0	0	NA	exonic	Trpm1	stopgain	Trpm1:NM_001039104:exon3:c.C250T:p.Q84X	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992465	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	65312728	12A2p6	cell line	sgMsh2	65312728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	50	0	0	NA	exonic	Tjp1	nonsynonymous SNV	"Tjp1:NM_001163574:exon20:c.G3460A:p.E1154K,Tjp1:NM_009386:exon21:c.G3700A:p.E1234K"	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9879658	TCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	65313005	12A2p6	cell line	sgMsh2	65313005	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	144	0	0	NA	exonic	Tjp1	synonymous SNV	"Tjp1:NM_001163574:exon20:c.T3183C:p.S1061S,Tjp1:NM_009386:exon21:c.T3423C:p.S1141S"	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	66074375	12A2p6	cell line	sgMsh2	66074375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	258	0	0	NA	exonic	Snrpa1	nonsynonymous SNV	Snrpa1:NM_021336:exon9:c.T763C:p.S255P	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	66171343	12A2p6	cell line	sgMsh2	66171343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	104	0	0	NA	exonic	Chsy1	nonsynonymous SNV	Chsy1:NM_001081163:exon3:c.A1325G:p.Y442C	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996147	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	66710274	12A2p6	cell line	sgMsh2	66710274	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	64	0	0	NA	exonic	Lins1	synonymous SNV	"Lins1:NM_001191001:exon6:c.G783A:p.L261L,Lins1:NM_152815:exon6:c.G798A:p.L266L"	7qC	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9964035	TGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	74346684	12A2p6	cell line	sgMsh2	74346684	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	30	0	0	NA	exonic	Slco3a1	nonsynonymous SNV	"Slco3a1:NM_001038643:exon4:c.C973T:p.P325S,Slco3a1:NM_023908:exon4:c.C973T:p.P325S"	7qD1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9764031	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	78450974	12A2p6	cell line	sgMsh2	78450974	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	155	0	0	NA	exonic	Ntrk3	nonsynonymous SNV	"Ntrk3:NM_008746:exon11:c.G1309A:p.G437R,Ntrk3:NM_182809:exon11:c.G1309A:p.G437R"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	0.9997396	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	78843901	12A2p6	cell line	sgMsh2	78843901	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Det1	synonymous SNV	Det1:NM_029585:exon2:c.T354G:p.G118G	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	191	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.8794256	CAG	synonymous	AGA	8	AGAAGAAG	NA
M7_p20	chr7	79089869	12A2p6	cell line	sgMsh2	79089869	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	123	0	0	NA	exonic	Acan	nonsynonymous SNV	"Acan:NM_001361500:exon6:c.T1024A:p.S342T,Acan:NM_007424:exon6:c.T1024A:p.S342T"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998668	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	79456091	12A2p6	cell line	sgMsh2	79456091	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	178	0	0	NA	exonic	Polg	frameshift deletion	"Polg:NM_001360096:exon12:c.1336delT:p.Y446Ifs*3,Polg:NM_001360095:exon13:c.421delT:p.Y141Ifs*3,Polg:NM_017462:exon13:c.2149delT:p.Y717Ifs*3"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7_p20	chr7	79695307	12A2p6	cell line	sgMsh2	79695307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	56	0	0	NA	exonic	Ticrr	nonsynonymous SNV	Ticrr:NM_029835:exon20:c.C4919T:p.T1640I	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9943856	ACC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr7	79695794	12A2p6	cell line	sgMsh2	79695794	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	101	0	0	NA	exonic	Ticrr	synonymous SNV	Ticrr:NM_029835:exon20:c.A5406G:p.S1802S	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995444	CAG	synonymous	CCACT	11	CCACTCCACTC	NA
M7_p20	chr7	80082188	12A2p6	cell line	sgMsh2	80082188	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	Zfp710	nonsynonymous SNV	"Zfp710:NM_001145999:exon2:c.A1112T:p.H371L,Zfp710:NM_001146000:exon2:c.A1112T:p.H371L,Zfp710:NM_175433:exon2:c.A1112T:p.H371L"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9921647	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	80328797	12A2p6	cell line	sgMsh2	80328797	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.429	15	0	0	NA	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon14:c.T1902C:p.A634A	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9469916	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	80359748	12A2p6	cell line	sgMsh2	80359748	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	59	0	0	NA	exonic	Man2a2	nonsynonymous SNV	Man2a2:NM_172903:exon17:c.G2357A:p.R786Q	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9952486	CCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	80378069	12A2p6	cell line	sgMsh2	80378069	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	43	0	0	NA	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon19:c.C2332T:p.R778C	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9884537	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	80381638	12A2p6	cell line	sgMsh2	80381638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	79	0	0	NA	exonic	Fes	nonsynonymous SNV	Fes:NM_010194:exon11:c.A1493G:p.D498G	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.892466618	1	0.9790155	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	80514615	12A2p6	cell line	sgMsh2	80514615	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	290	0	0	NA	exonic	Blm	nonsynonymous SNV	"Blm:NM_001042527:exon2:c.A72C:p.Q24H,Blm:NM_007550:exon2:c.A81C:p.Q27H"	7qD2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.27E-08	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	80730246	12A2p6	cell line	sgMsh2	80730246	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	170	0	0	NA	exonic	Iqgap1	frameshift deletion	Iqgap1:NM_016721:exon27:c.3466delA:p.I1156Sfs*11	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr7	81025277	12A2p6	cell line	sgMsh2	81025277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	76	0	0	NA	exonic	Zfp592	nonsynonymous SNV	Zfp592:NM_178707:exon3:c.T1988C:p.V663A	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.794342016	1	0.813707	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	56	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.719580414	1	0.5825189	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr7	81095526	12A2p6	cell line	sgMsh2	81095526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	120	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon8:c.G4021A:p.E1341K	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998425	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	81351885	12A2p6	cell line	sgMsh2	81351885	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	86	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon7:c.A1030G:p.R344G,Cpeb1:NM_001252525:exon9:c.A1273G:p.R425G,Cpeb1:NM_001252526:exon9:c.A1255G:p.R419G,Cpeb1:NM_007755:exon9:c.A1270G:p.R424G"	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9771159	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	82598090	12A2p6	cell line	sgMsh2	82598090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	192	0	0	NA	exonic	Adamtsl3	nonsynonymous SNV	Adamtsl3:NM_001190374:exon25:c.T4253C:p.V1418A	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	82683023	12A2p6	cell line	sgMsh2	82683023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	371	0	0	NA	exonic	Efl1	nonsynonymous SNV	"Efl1:NM_001159672:exon9:c.T874G:p.L292V,Efl1:NM_175317:exon9:c.T874G:p.L292V"	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.13E-09	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	82867884	12A2p6	cell line	sgMsh2	82867884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	200	0	0	NA	exonic	Mex3b	synonymous SNV	Mex3b:NM_175366:exon1:c.G234A:p.P78P	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999982	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	83618603	12A2p6	cell line	sgMsh2	83618603	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.345	42	0	0	NA	exonic	Tmc3	frameshift deletion	Tmc3:NM_177695:exon21:c.2274delA:p.K759Sfs*19	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr7	83618621	12A2p6	cell line	sgMsh2	83618621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	40	0	0	NA	exonic	Tmc3	synonymous SNV	Tmc3:NM_177695:exon21:c.A2292G:p.Q764Q	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9863733	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	84343763	12A2p6	cell line	sgMsh2	84343763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	104	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon5:c.A601G:p.T201A	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996147	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	84594768	12A2p6	cell line	sgMsh2	84594768	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	157	0	0	NA	exonic	Fah	nonsynonymous SNV	Fah:NM_010176:exon9:c.C782T:p.P261L	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.8805169	CGG	nonsynonymous	CCAC	8	CCACCCAC	NA
M7_p20	chr7	84856838	12A2p6	cell line	sgMsh2	84856838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	393	0	0	NA	exonic	Olfr291	synonymous SNV	Olfr291:NM_146415:exon3:c.T474C:p.S158S	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.784996816	2	0.8848548	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	84916249	12A2p6	cell line	sgMsh2	84916249	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	415	0	0	NA	exonic	Olfr290	nonsynonymous SNV	Olfr290:NM_146416:exon1:c.T469C:p.F157L	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	84946322	12A2p6	cell line	sgMsh2	84946322	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	332	0	0	NA	exonic	Vmn2r65	nonsynonymous SNV	Vmn2r65:NM_001105180:exon3:c.C1153T:p.P385S	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.247647805	3	1	GGC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M7_p20	chr7	85406881	12A2p6	cell line	sgMsh2	85406881	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	655	0	0	NA	exonic	Vmn2r69	nonsynonymous SNV	Vmn2r69:NM_001105182:exon6:c.T2048C:p.M683T	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1	CAT	nonsynonymous	TTC	9	TTCTTCTTC	NA
M7_p20	chr7	85415554	12A2p6	cell line	sgMsh2	85415554	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	253	0	0	NA	exonic	Vmn2r69	synonymous SNV	Vmn2r69:NM_001105182:exon1:c.T123G:p.T41T	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	85749164	12A2p6	cell line	sgMsh2	85749164	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	204	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon5:c.T1592C:p.F531S	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999986	AAA	nonsynonymous	ACAA	9	ACAAACAAA	NA
M7_p20	chr7	85871617	12A2p6	cell line	sgMsh2	85871617	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.226	590	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.C1142A:p.P381Q	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	85871998	12A2p6	cell line	sgMsh2	85871998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	131	0	0	NA	exonic	Vmn2r73	nonsynonymous SNV	Vmn2r73:NM_001105186:exon3:c.A761G:p.N254S	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999149	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	85957206	12A2p6	cell line	sgMsh2	85957206	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	198	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon3:c.T922G:p.Y308D	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9991931	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	86228859	12A2p6	cell line	sgMsh2	86228859	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	36	0	0	NA	exonic	Vmn2r76	synonymous SNV	Vmn2r76:NM_001384930:exon4:c.T1320C:p.H440H	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9830153	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr7	86306382	12A2p6	cell line	sgMsh2	86306382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	180	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.A730G:p.M244V	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999945	ATG	nonsynonymous	CAC	8	CACCACCA	NA
M7_p20	chr7	86335914	12A2p6	cell line	sgMsh2	86335914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	307	0	0	NA	exonic	Olfr307	nonsynonymous SNV	Olfr307:NM_146617:exon1:c.A481G:p.T161A	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	5.52E-09	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	86488673	12A2p6	cell line	sgMsh2	86488673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	218	0	0	NA	exonic	Olfr298	nonsynonymous SNV	Olfr298:NM_001011751:exon1:c.A877G:p.S293G	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	86585488	12A2p6	cell line	sgMsh2	86585488	A	T	SNV	Mutect2;Vardict	2	0.077	435	0	0	NA	exonic	Olfr295	nonsynonymous SNV	Olfr295:NM_146851:exon1:c.A212T:p.Y71F	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.359790207	3	3.84E-09	TAT	nonsynonymous	GTAT	8	GTATGTAT	NA
M7_p20	chr7	86695231	12A2p6	cell line	sgMsh2	86695231	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.193	216	0	0	NA	exonic	Olfr292	frameshift deletion	Olfr292:NM_146620:exon2:c.774delA:p.K259Nfs*7	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.901811818	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7_p20	chr7	87602580	12A2p6	cell line	sgMsh2	87602580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	321	0	0	NA	exonic	Grm5	nonsynonymous SNV	"Grm5:NM_001081414:exon3:c.A37G:p.K13E,Grm5:NM_001143834:exon3:c.A37G:p.K13E"	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	3.07E-09	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	87603038	12A2p6	cell line	sgMsh2	87603038	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	281	0	0	NA	exonic	Grm5	synonymous SNV	"Grm5:NM_001081414:exon3:c.C495T:p.N165N,Grm5:NM_001143834:exon3:c.C495T:p.N165N"	7qD3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	2.04E-08	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr7	90427491	12A2p6	cell line	sgMsh2	90427491	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	64	0	0	NA	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.A908G:p.K303R	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9964035	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	90427503	12A2p6	cell line	sgMsh2	90427503	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	63	0	0	NA	exonic	Ccdc89	nonsynonymous SNV	Ccdc89:NM_027298:exon1:c.T920A:p.L307Q	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9961974	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	92624080	12A2p6	cell line	sgMsh2	92624080	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	120	0	0	NA	exonic	Ankrd42	nonsynonymous SNV	Ankrd42:NM_028665:exon4:c.T338C:p.I113T	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9998421	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	96843077	12A2p6	cell line	sgMsh2	96843077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	146	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon20:c.A3220G:p.S1074G,Tenm4:NM_011858:exon20:c.A3109G:p.S1037G,Tenm4:NM_001310762:exon21:c.A3217G:p.S1073G"	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.836395417	1	0.9449224	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	96895308	12A2p6	cell line	sgMsh2	96895308	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	254	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon31:c.G6641A:p.R2214K,Tenm4:NM_001310762:exon31:c.G6617A:p.R2206K,Tenm4:NM_011858:exon31:c.G6530A:p.R2177K"	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	97499576	12A2p6	cell line	sgMsh2	97499576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	283	0	0	NA	exonic	Ints4	synonymous SNV	"Ints4:NM_001358012:exon6:c.T661C:p.L221L,Ints4:NM_027256:exon6:c.T688C:p.L230L"	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.83E-08	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	98352168	12A2p6	cell line	sgMsh2	98352168	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.184	22	0	0	NA	exonic	Tsku	nonsynonymous SNV	"Tsku:NM_001024619:exon2:c.C955T:p.R319C,Tsku:NM_001168539:exon2:c.C955T:p.R319C,Tsku:NM_001168540:exon3:c.C955T:p.R319C,Tsku:NM_001168541:exon4:c.C955T:p.R319C"	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.910773	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	98477241	12A2p6	cell line	sgMsh2	98477241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	81	0	0	NA	exonic	Gucy2d	synonymous SNV	Gucy2d:NM_001130693:exon19:c.C3303A:p.R1101R	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9873233	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	98498629	12A2p6	cell line	sgMsh2	98498629	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	45	0	0	NA	exonic	Lrrc32	synonymous SNV	Lrrc32:NM_001113379:exon3:c.C615T:p.L205L	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.831722816	1	0.09744532	TCT	synonymous	NA	NA	NA	NA
M7_p20	chr7	98939933	12A2p6	cell line	sgMsh2	98939933	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	127	0	0	NA	exonic	Uvrag	nonsynonymous SNV	Uvrag:NM_178635:exon13:c.G1260T:p.Q420H	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998935	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	99470339	12A2p6	cell line	sgMsh2	99470339	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	36	0	0	NA	exonic	Klhl35	nonsynonymous SNV	Klhl35:NM_028145:exon3:c.T1030A:p.Y344N	7qE1	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9830153	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	99839870	12A2p6	cell line	sgMsh2	99839870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	48	0	0	NA	exonic	Spcs2	nonsynonymous SNV	Spcs2:NM_025668:exon5:c.T508C:p.Y170H	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9912455	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	100029349	12A2p6	cell line	sgMsh2	100029349	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	62	0	0	NA	exonic	Chrdl2	nonsynonymous SNV	"Chrdl2:NM_001291320:exon9:c.A1127C:p.K376T,Chrdl2:NM_133709:exon9:c.A1106C:p.K369T"	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	100881196	12A2p6	cell line	sgMsh2	100881196	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	24	0	0	NA	exonic	Arhgef17	nonsynonymous SNV	Arhgef17:NM_001081116:exon11:c.A4382C:p.E1461A	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9673015	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	101246329	12A2p6	cell line	sgMsh2	101246329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	105	0	0	NA	exonic	Fchsd2	nonsynonymous SNV	Fchsd2:NM_199012:exon11:c.A952G:p.I318V	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996357	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	101386855	12A2p6	cell line	sgMsh2	101386855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	116	0	0	NA	exonic	Arap1	nonsynonymous SNV	"Arap1:NM_027180:exon4:c.A350G:p.N117S,Arap1:NM_001040112:exon5:c.A350G:p.N117S,Arap1:NM_001040111:exon8:c.A1094G:p.N365S"	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.999803	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	101833620	12A2p6	cell line	sgMsh2	101833620	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	41	0	0	NA	exonic	Inppl1	nonsynonymous SNV	"Inppl1:NM_001122739:exon4:c.C313T:p.P105S,Inppl1:NM_010567:exon4:c.C313T:p.P105S"	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9863198	GGC	nonsynonymous	TGGGC	10	TGGGCTGGGC	NA
M7_p20	chr7	101915665	12A2p6	cell line	sgMsh2	101915665	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	124	0	0	NA	exonic	Lrrc51	nonsynonymous SNV	"Lrrc51:NM_001162973:exon3:c.A185T:p.N62I,Lrrc51:NM_001162974:exon3:c.A185T:p.N62I,Lrrc51:NM_001357584:exon3:c.A185T:p.N62I,Lrrc51:NM_027053:exon4:c.A185T:p.N62I"	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998741	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102012774	12A2p6	cell line	sgMsh2	102012774	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	92	0	0	NA	exonic	Numa1	nonsynonymous SNV	Numa1:NM_133947:exon21:c.G5671A:p.D1891N	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992465	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102240087	12A2p6	cell line	sgMsh2	102240087	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	119	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.T158A:p.L53Q	7qE2	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.999219	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102494453	12A2p6	cell line	sgMsh2	102494453	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	369	0	0	NA	exonic	Olfr545	synonymous SNV	Olfr545:NM_146840:exon1:c.C321T:p.C107C	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1.14E-09	TGC	synonymous	NA	NA	NA	NA
M7_p20	chr7	102605185	12A2p6	cell line	sgMsh2	102605185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	210	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T830C:p.L277P	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.999999	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102640431	12A2p6	cell line	sgMsh2	102640431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	157	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.T184C:p.Y62H	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999801	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102658984	12A2p6	cell line	sgMsh2	102658984	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	270	0	0	NA	exonic	Olfr555	nonsynonymous SNV	Olfr555:NM_147103:exon1:c.G162T:p.Q54H	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	3.68E-08	AGA	nonsynonymous	AGAGC	10	AGAGCAGAGC	NA
M7_p20	chr7	102774994	12A2p6	cell line	sgMsh2	102774994	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	237	0	0	NA	exonic	Olfr561	nonsynonymous SNV	Olfr561:NM_147092:exon1:c.G469A:p.A157T	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102804243	12A2p6	cell line	sgMsh2	102804243	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	414	0	0	NA	exonic	Olfr564	nonsynonymous SNV	Olfr564:NM_146359:exon1:c.T764C:p.I255T	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.948537819	1	9.14E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	102965961	12A2p6	cell line	sgMsh2	102965961	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	223	0	0	NA	exonic	Olfr576	nonsynonymous SNV	Olfr576:NM_001001805:exon1:c.A860T:p.N287I	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	103219940	12A2p6	cell line	sgMsh2	103219940	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	206	0	0	NA	exonic	Olfr594	nonsynonymous SNV	Olfr594:NM_207143:exon1:c.G221A:p.G74D	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	103250769	12A2p6	cell line	sgMsh2	103250769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	699	0	0	NA	exonic	Usp17ld	nonsynonymous SNV	Usp17ld:NM_001001559:exon2:c.T955C:p.W319R	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	1	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	103338948	12A2p6	cell line	sgMsh2	103338948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	82	0	0	NA	exonic	Olfr599	nonsynonymous SNV	Olfr599:NM_146731:exon1:c.A893G:p.K298R	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9752693	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	103383210	12A2p6	cell line	sgMsh2	103383210	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	250	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.G791T:p.R264M	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.761633815	2	0.9133024	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	103460363	12A2p6	cell line	sgMsh2	103460363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	176	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.C844T:p.L282L	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999931	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	103892925	12A2p6	cell line	sgMsh2	103892925	A	G	SNV	Mutect2;Vardict	2	0.098	270	0	0	NA	exonic	Olfr64	nonsynonymous SNV	Olfr64:NM_013617:exon1:c.T809C:p.V270A	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.457914809	2	0.9945825	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104069002	12A2p6	cell line	sgMsh2	104069002	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	70	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.G28T:p.G10W	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.997426	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104106430	12A2p6	cell line	sgMsh2	104106430	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	195	0	0	NA	exonic	Olfr646	synonymous SNV	Olfr646:NM_147056:exon1:c.T150C:p.S50S	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999976	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	104106545	12A2p6	cell line	sgMsh2	104106545	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	205	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.A265T:p.I89F	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9993255	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104107148	12A2p6	cell line	sgMsh2	104107148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	111	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.T868C:p.Y290H	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997395	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104128695	12A2p6	cell line	sgMsh2	104128695	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	109	0	0	NA	exonic	Ubqln5	synonymous SNV	Ubqln5:NM_027634:exon1:c.T921C:p.P307P	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	0.855085817	1	0.9633386	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	104129212	12A2p6	cell line	sgMsh2	104129212	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	31	0	0	NA	exonic	Ubqln5	nonsynonymous SNV	Ubqln5:NM_027634:exon1:c.A404C:p.D135A	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9776579	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104141090	12A2p6	cell line	sgMsh2	104141090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	66	0	0	NA	exonic	Ubqln3	nonsynonymous SNV	"Ubqln3:NM_001384184:exon2:c.T1861C:p.F621L,Ubqln3:NM_198623:exon2:c.T1792C:p.F598L"	7qE3	chr7-57591651-104249879	4	2	2	0.9	4.205340083	NA	1	1	1	0.9967828	AAG	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr7	104265854	12A2p6	cell line	sgMsh2	104265854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	200	0	0	NA	exonic	Trim5	nonsynonymous SNV	Trim5:NM_001310602:exon8:c.A1007G:p.N336S	7qE3	chr7-104259115-104329817	2	NA	NA	0.9	4.205340083	NA	NA	1	1	0.9999982	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104336164	12A2p6	cell line	sgMsh2	104336164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	252	0	0	NA	exonic	Trim34b	synonymous SNV	Trim34b:NM_001243916:exon7:c.T1005C:p.N335N	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr7	104473250	12A2p6	cell line	sgMsh2	104473250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	178	0	0	NA	exonic	Trim30d	nonsynonymous SNV	"Trim30d:NM_001167828:exon5:c.T353C:p.I118T,Trim30d:NM_199146:exon6:c.T803C:p.I268T"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999939	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104588061	12A2p6	cell line	sgMsh2	104588061	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	185	0	0	NA	exonic	Olfr654	nonsynonymous SNV	Olfr654:NM_146379:exon1:c.T307G:p.F103V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999958	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104596668	12A2p6	cell line	sgMsh2	104596668	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	168	0	0	NA	exonic	Olfr655	nonsynonymous SNV	Olfr655:NM_146820:exon1:c.G512T:p.R171M	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	104618461	12A2p6	cell line	sgMsh2	104618461	T	-	Deletion	Mutect2;Vardict	2	0.165	141	0	0	NA	exonic	Olfr656	frameshift deletion	Olfr656:NM_147075:exon1:c.805delT:p.F270Sfs*60	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.770979015	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr7	104635816	12A2p6	cell line	sgMsh2	104635816	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	295	0	0	NA	exonic	Olfr657	frameshift deletion	Olfr657:NM_146312:exon1:c.141delA:p.N48Tfs*13	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr7	104860793	12A2p6	cell line	sgMsh2	104860793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	380	0	0	NA	exonic	Usp17la	nonsynonymous SNV	Usp17la:NM_007887:exon3:c.T604C:p.S202P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.08E-09	CTC	nonsynonymous	TCAGC	14	TCAGCTCAGCTCAG	NA
M7_p20	chr7	105056814	12A2p6	cell line	sgMsh2	105056814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	418	0	0	NA	exonic	Olfr677	nonsynonymous SNV	Olfr677:NM_146358:exon1:c.A567C:p.L189F	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	105329402	12A2p6	cell line	sgMsh2	105329402	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	144	0	0	NA	exonic	Olfr690	synonymous SNV	Olfr690:NM_020290:exon1:c.T789C:p.T263T	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999588	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	105337497	12A2p6	cell line	sgMsh2	105337497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	203	0	0	NA	exonic	Olfr691	nonsynonymous SNV	Olfr691:NM_147061:exon1:c.T218C:p.I73T	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999985	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	105404735	12A2p6	cell line	sgMsh2	105404735	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	102	0	0	NA	exonic	Cnga4	nonsynonymous SNV	Cnga4:NM_001033317:exon1:c.C44T:p.P15L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995691	CCA	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.357	78	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr7	105652070	12A2p6	cell line	sgMsh2	105652070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	132	0	0	NA	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon3:c.T633C:p.P211P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999195	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	105721722	12A2p6	cell line	sgMsh2	105721722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	118	0	0	NA	exonic	Dnhd1	synonymous SNV	Dnhd1:NM_001370803:exon44:c.A14205G:p.T4735T	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998239	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr7	105742238	12A2p6	cell line	sgMsh2	105742238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	161	0	0	NA	exonic	Ilk	synonymous SNV	"Ilk:NM_001161724:exon12:c.A1110G:p.R370R,Ilk:NM_010562:exon12:c.A1110G:p.R370R"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999841	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	105898861	12A2p6	cell line	sgMsh2	105898861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	295	0	0	NA	exonic	Gm4070;Gvin1	synonymous SNV	"Gvin1:NM_001039160:exon2:c.T4983C:p.S1661S,Gm4070:NM_001243040:exon2:c.T4983C:p.S1661S,Gm4070:NM_001243039:exon4:c.T4983C:p.S1661S,Gvin1:NM_029000:exon4:c.T4983C:p.S1661S"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9969266	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr7	105898966	12A2p6	cell line	sgMsh2	105898966	T	C	SNV	Mutect2;Vardict	2	0.039	304	0	0	NA	exonic	Gm4070;Gvin1	synonymous SNV	"Gvin1:NM_001039160:exon2:c.A4878G:p.A1626A,Gm4070:NM_001243040:exon2:c.A4878G:p.A1626A,Gm4070:NM_001243039:exon4:c.A4878G:p.A1626A,Gvin1:NM_029000:exon4:c.A4878G:p.A1626A"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.182231404	3	1	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr7	106601234	12A2p6	cell line	sgMsh2	106601234	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	143	0	0	NA	exonic	Gm1966	frameshift deletion	"Gm1966:NM_001277179:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277180:exon3:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277181:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277182:exon4:c.2802delA:p.K934Nfs*4,Gm1966:NM_001277183:exon6:c.2802delA:p.K934Nfs*4"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M7_p20	chr7	106677976	12A2p6	cell line	sgMsh2	106677976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	244	0	0	NA	exonic	Olfr693	nonsynonymous SNV	Olfr693:NM_146453:exon1:c.A509G:p.K170R	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	106689333	12A2p6	cell line	sgMsh2	106689333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	486	0	0	NA	exonic	Olfr694	nonsynonymous SNV	Olfr694:NM_146452:exon1:c.A397G:p.T133A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	106753278	12A2p6	cell line	sgMsh2	106753278	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	exonic	Olfr698	nonsynonymous SNV	Olfr698:NM_146602:exon1:c.T109A:p.L37I	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.163541003	3	1	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	106790217	12A2p6	cell line	sgMsh2	106790217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	140	0	0	NA	exonic	Olfr699	synonymous SNV	Olfr699:NM_001011862:exon1:c.A783G:p.L261L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999485	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr7	106886682	12A2p6	cell line	sgMsh2	106886682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	357	0	0	NA	exonic	Olfr706	nonsynonymous SNV	Olfr706:NM_146353:exon1:c.T134C:p.L45P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	2.95E-08	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	107186654	12A2p6	cell line	sgMsh2	107186654	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	310	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon5:c.G1936A:p.G646R	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	4.83E-09	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	107902860	12A2p6	cell line	sgMsh2	107902860	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	473	0	0	NA	exonic	Olfr472	nonsynonymous SNV	Olfr472:NM_146774:exon1:c.T142G:p.L48V	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	108081365	12A2p6	cell line	sgMsh2	108081365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	126	0	0	NA	exonic	Olfr481	synonymous SNV	Olfr481:NM_146925:exon1:c.C570T:p.G190G	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998874	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	108094849	12A2p6	cell line	sgMsh2	108094849	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	472	0	0	NA	exonic	Olfr482	synonymous SNV	Olfr482:NM_146733:exon1:c.C720T:p.A240A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	108159177	12A2p6	cell line	sgMsh2	108159177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	286	0	0	NA	exonic	Olfr485	nonsynonymous SNV	Olfr485:NM_001011810:exon1:c.T695C:p.L232P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.56E-08	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	108286369	12A2p6	cell line	sgMsh2	108286369	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	360	0	0	NA	exonic	Olfr490	synonymous SNV	Olfr490:NM_146498:exon1:c.T756C:p.T252T	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.23E-09	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	108368304	12A2p6	cell line	sgMsh2	108368304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	744	0	0	NA	exonic	Olfr494	synonymous SNV	Olfr494:NM_146737:exon1:c.A813C:p.T271T	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	108465778	12A2p6	cell line	sgMsh2	108465778	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	199	0	0	NA	exonic	Olfr498	synonymous SNV	Olfr498:NM_146307:exon1:c.T453G:p.S151S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999981	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	108465962	12A2p6	cell line	sgMsh2	108465962	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	345	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.A637G:p.T213A	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.54E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	108466294	12A2p6	cell line	sgMsh2	108466294	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	349	0	0	NA	exonic	Olfr498	nonsynonymous SNV	Olfr498:NM_146307:exon1:c.C969A:p.H323Q	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999999	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	108523007	12A2p6	cell line	sgMsh2	108523007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	117	0	0	NA	exonic	Olfr502	synonymous SNV	Olfr502:NM_146739:exon1:c.T942C:p.S314S	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998137	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	108523091	12A2p6	cell line	sgMsh2	108523091	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	404	0	0	NA	exonic	Olfr502	frameshift deletion	Olfr502:NM_146739:exon1:c.858delC:p.M287Cfs*1	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7_p20	chr7	108565457	12A2p6	cell line	sgMsh2	108565457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	357	0	0	NA	exonic	Olfr504	nonsynonymous SNV	Olfr504:NM_001011858:exon1:c.T337C:p.F113L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.28E-09	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	108941463	12A2p6	cell line	sgMsh2	108941463	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	147	0	0	NA	exonic	Eif3f	synonymous SNV	Eif3f:NM_025344:exon8:c.C1011T:p.D337D	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999652	ACC	synonymous	NA	NA	NA	NA
M7_p20	chr7	109026683	12A2p6	cell line	sgMsh2	109026683	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	103	0	0	NA	exonic	Tub	stopgain	Tub:NM_021885:exon7:c.C778T:p.Q260X	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.827050216	1	0.9097544	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	109519937	12A2p6	cell line	sgMsh2	109519937	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	228	0	0	NA	exonic	Rpl27a	synonymous SNV	Rpl27a:NM_011975:exon3:c.A87G:p.P29P	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.289701206	3	3.52E-09	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	109918721	12A2p6	cell line	sgMsh2	109918721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	146	0	0	NA	exonic	Dennd5a	synonymous SNV	"Dennd5a:NM_001311139:exon7:c.T1707C:p.D569D,Dennd5a:NM_021494:exon8:c.T1779C:p.D593D"	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9962335	CAT	synonymous	ATC	14	ATCATCATCATCAT	NA
M7_p20	chr7	110267800	12A2p6	cell line	sgMsh2	110267800	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	145	0	0	NA	exonic	Swap70	nonsynonymous SNV	Swap70:NM_009302:exon6:c.G808A:p.G270R	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999611	TGG	nonsynonymous	GAAA	8	GAAAGAAA	NA
M7_p20	chr7	110489358	12A2p6	cell line	sgMsh2	110489358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	exonic	Sbf2	nonsynonymous SNV	Sbf2:NM_177324:exon3:c.T145C:p.F49L	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9978227	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	110821282	12A2p6	cell line	sgMsh2	110821282	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	385	0	0	NA	exonic	Rnf141	nonsynonymous SNV	Rnf141:NM_025999:exon5:c.A514T:p.S172C	7qE3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.06E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	112876204	12A2p6	cell line	sgMsh2	112876204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	143	0	0	NA	exonic	Tead1	nonsynonymous SNV	"Tead1:NM_001166585:exon9:c.T829C:p.F277L,Tead1:NM_009346:exon10:c.T841C:p.F281L,Tead1:NM_001166584:exon11:c.T904C:p.F302L"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999565	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	114526788	12A2p6	cell line	sgMsh2	114526788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	306	0	0	NA	exonic	Pde3b	synonymous SNV	Pde3b:NM_011055:exon12:c.T2256C:p.D752D	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	5.78E-09	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr7	117634620	12A2p6	cell line	sgMsh2	117634620	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	48	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon7:c.T1373C:p.L458P	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.621455812	2	0.7053996	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	118433917	12A2p6	cell line	sgMsh2	118433917	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	24	0	0	NA	exonic	Syt17	synonymous SNV	"Syt17:NM_001362179:exon5:c.G684C:p.V228V,Syt17:NM_001362180:exon5:c.G684C:p.V228V,Syt17:NM_138649:exon5:c.G855C:p.V285V"	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9673015	TCA	synonymous	NA	NA	NA	NA
M7_p20	chr7	118490439	12A2p6	cell line	sgMsh2	118490439	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	39	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.G896T:p.G299V	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9856008	GCC	nonsynonymous	GCA	8	GCAGCAGC	NA
M7_p20	chr7	118552817	12A2p6	cell line	sgMsh2	118552817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	53	0	0	NA	exonic	Tmc7	nonsynonymous SNV	Tmc7:NM_172476:exon7:c.A880G:p.I294V	7qF1	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9933668	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	118724564	12A2p6	cell line	sgMsh2	118724564	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	94	0	0	NA	exonic	Ccp110	synonymous SNV	"Ccp110:NM_001360793:exon6:c.G2022A:p.R674R,Ccp110:NM_001360794:exon6:c.G2025A:p.R675R,Ccp110:NM_182995:exon6:c.G2025A:p.R675R"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.827050216	1	0.09216916	GGG	synonymous	GGAGCA	23	GAGCAGGAGAGGGAGCAGGAGCA	NA
M7_p20	chr7	118760190	12A2p6	cell line	sgMsh2	118760190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	368	0	0	NA	exonic	Vps35l	synonymous SNV	Vps35l:NM_027815:exon8:c.T753C:p.V251V	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	1.15E-09	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr7	119454281	12A2p6	cell line	sgMsh2	119454281	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	106	0	0	NA	exonic	Gp2	nonsynonymous SNV	Gp2:NM_025989:exon3:c.G447T:p.K149N	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9996555	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	119498011	12A2p6	cell line	sgMsh2	119498011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	83	0	0	NA	exonic	Pdilt	nonsynonymous SNV	Pdilt:NM_027943:exon7:c.T856C:p.Y286H	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.803687216	1	0.8403661	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	119582766	12A2p6	cell line	sgMsh2	119582766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	156	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon9:c.T1237C:p.F413L,Acsm2:NM_001177978:exon9:c.T1162C:p.F388L,Acsm2:NM_146197:exon9:c.T1162C:p.F388L"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.999979	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	119785795	12A2p6	cell line	sgMsh2	119785795	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	233	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon9:c.C798A:p.A266A,Eri2:NM_027698:exon9:c.C1482A:p.A494A"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999997	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	119801262	12A2p6	cell line	sgMsh2	119801262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	78	0	0	NA	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A269G:p.N90S,Rexo5:NM_001370778:exon4:c.A269G:p.N90S"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9983529	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	119801285	12A2p6	cell line	sgMsh2	119801285	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	84	0	0	NA	exonic	Rexo5	nonsynonymous SNV	"Rexo5:NM_001004187:exon3:c.A292C:p.K98Q,Rexo5:NM_001370778:exon4:c.A292C:p.K98Q"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988219	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	119805210	12A2p6	cell line	sgMsh2	119805210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	183	0	0	NA	exonic	Rexo5	synonymous SNV	"Rexo5:NM_001004187:exon5:c.T528C:p.Y176Y,Rexo5:NM_001370778:exon6:c.T528C:p.Y176Y"	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999954	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr7	120021009	12A2p6	cell line	sgMsh2	120021009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	220	0	0	NA	exonic	Dnah3	nonsynonymous SNV	Dnah3:NM_001370806:exon33:c.T4663C:p.Y1555H	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	TAG	nonsynonymous	CATAGT	12	CATAGTCATAGT	NA
M7_p20	chr7	121648566	12A2p6	cell line	sgMsh2	121648566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	37	0	0	NA	exonic	Usp31	nonsynonymous SNV	Usp31:NM_001033173:exon16:c.A3653G:p.K1218R	7qF2	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.859758417	1	0.9250983	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	123175446	12A2p6	cell line	sgMsh2	123175446	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	135	0	0	NA	exonic	Tnrc6a	synonymous SNV	Tnrc6a:NM_144925:exon9:c.G3504A:p.R1168R	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.700890014	2	0.9458414	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	123176843	12A2p6	cell line	sgMsh2	123176843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	206	0	0	NA	exonic	Tnrc6a	nonsynonymous SNV	Tnrc6a:NM_144925:exon10:c.A3536G:p.N1179S	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	AAC	nonsynonymous	AAAC	10	AAACAAACAA	NA
M7_p20	chr7	125471241	12A2p6	cell line	sgMsh2	125471241	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	128	0	0	NA	exonic	Nsmce1	nonsynonymous SNV	"Nsmce1:NM_001360659:exon5:c.T355C:p.S119P,Nsmce1:NM_001377010:exon5:c.T355C:p.S119P,Nsmce1:NM_001377011:exon5:c.T355C:p.S119P,Nsmce1:NM_001377012:exon5:c.T355C:p.S119P,Nsmce1:NM_026330:exon5:c.T355C:p.S119P"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	125663465	12A2p6	cell line	sgMsh2	125663465	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	159	0	0	NA	exonic	Gtf3c1	nonsynonymous SNV	Gtf3c1:NM_207239:exon20:c.A3221G:p.E1074G	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999822	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	125669638	12A2p6	cell line	sgMsh2	125669638	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	0	0	NA	exonic	Gtf3c1	synonymous SNV	Gtf3c1:NM_207239:exon14:c.A2295G:p.K765K	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999923	TTT	synonymous	T	5	TTTTT	NA
M7_p20	chr7	126367949	12A2p6	cell line	sgMsh2	126367949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	161	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon8:c.T432G:p.S144R	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999841	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	126547648	12A2p6	cell line	sgMsh2	126547648	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	93	0	0	NA	exonic	Eif3c	nonsynonymous SNV	Eif3c:NM_146200:exon18:c.G2360T:p.R787M	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992875	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	126572480	12A2p6	cell line	sgMsh2	126572480	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	97	0	0	NA	exonic	Cln3	synonymous SNV	"Cln3:NM_001329789:exon13:c.T1116C:p.I372I,Cln3:NM_009907:exon14:c.T1188C:p.I396I,Cln3:NM_001146311:exon17:c.T1188C:p.I396I"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994302	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr7	126786500	12A2p6	cell line	sgMsh2	126786500	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	60	0	0	NA	exonic	Ppp4c	synonymous SNV	"Ppp4c:NM_001360464:exon7:c.C666T:p.V222V,Ppp4c:NM_019674:exon8:c.C666T:p.V222V"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9955059	CGA	synonymous	NA	NA	NA	NA
M7_p20	chr7	126875927	12A2p6	cell line	sgMsh2	126875927	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	79	0	0	NA	exonic	Taok2	nonsynonymous SNV	"Taok2:NM_001163774:exon10:c.T757C:p.Y253H,Taok2:NM_001163775:exon10:c.T757C:p.Y253H"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9984424	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	127531863	12A2p6	cell line	sgMsh2	127531863	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	116	0	0	NA	exonic	Srcap	synonymous SNV	Srcap:NM_001304266:exon15:c.A2310G:p.R770R	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9944383	GAT	synonymous	NA	NA	NA	NA
M7_p20	chr7	127596214	12A2p6	cell line	sgMsh2	127596214	A	G	SNV	Mutect2;Vardict	2	0.188	22	0	0	NA	exonic	Rnf40	nonsynonymous SNV	"Rnf40:NM_001360883:exon12:c.A712G:p.T238A,Rnf40:NM_172281:exon13:c.A1711G:p.T571A"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9205673	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	127879144	12A2p6	cell line	sgMsh2	127879144	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	67	0	0	NA	exonic	Zfp646	synonymous SNV	Zfp646:NM_172749:exon2:c.A492G:p.Q164Q	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	127889628	12A2p6	cell line	sgMsh2	127889628	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	110	0	0	NA	exonic	Prss53	synonymous SNV	Prss53:NM_001081268:exon3:c.T93A:p.R31R	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9910466	CAC	synonymous	AGGGCC	13	AGGGCCAGGGCCA	NA
M7_p20	chr7	128129629	12A2p6	cell line	sgMsh2	128129629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	85	0	0	NA	exonic	Itgax	nonsynonymous SNV	"Itgax:NM_001363984:exon1:c.A10G:p.T4A,Itgax:NM_001363985:exon1:c.A10G:p.T4A,Itgax:NM_021334:exon1:c.A10G:p.T4A"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9988859	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	128136127	12A2p6	cell line	sgMsh2	128136127	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	74	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon13:c.T1453C:p.Y485H	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9979409	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	128545788	12A2p6	cell line	sgMsh2	128545788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	42	0	0	NA	exonic	Bag3	nonsynonymous SNV	Bag3:NM_013863:exon4:c.A1126G:p.I376V	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9877977	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	129629949	12A2p6	cell line	sgMsh2	129629949	-	TC	Insertion	Strelka2;Vardict	2	0.1957	92	0	0	NA	exonic	Wdr11	frameshift insertion	Wdr11:NM_172255:exon22:c.2716_2717insTC:p.L909Sfs*40	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.914427838	NA	NA	CTT	frameshift	TC	9	TCTCTCTCT	2
M7_p20	chr7	131318094	12A2p6	cell line	sgMsh2	131318094	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	95	0	0	NA	exonic	Cuzd1	nonsynonymous SNV	Cuzd1:NM_008411:exon3:c.A292G:p.T98A	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.841068017	1	0.9370717	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	132597746	12A2p6	cell line	sgMsh2	132597746	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.427	6	0	0	NA	exonic	Nkx1-2	synonymous SNV	Nkx1-2:NM_009123:exon2:c.T285G:p.A95A	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9132446	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	133721362	12A2p6	cell line	sgMsh2	133721362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	123	0	0	NA	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon11:c.A1702G:p.N568D,Dhx32:NM_001286030:exon12:c.A2122G:p.N708D,Dhx32:NM_001286031:exon12:c.A2122G:p.N708D,Dhx32:NM_001357685:exon12:c.A2077G:p.N693D,Dhx32:NM_133941:exon12:c.A2122G:p.N708D"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998668	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	133748902	12A2p6	cell line	sgMsh2	133748902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	195	0	0	NA	exonic	Dhx32	synonymous SNV	"Dhx32:NM_001286032:exon2:c.G18A:p.G6G,Dhx32:NM_001286030:exon3:c.G438A:p.G146G,Dhx32:NM_001286031:exon3:c.G438A:p.G146G,Dhx32:NM_001357685:exon3:c.G393A:p.G131G,Dhx32:NM_133941:exon3:c.G438A:p.G146G"	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999976	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr7	135697296	12A2p6	cell line	sgMsh2	135697296	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	312	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.T6008C:p.M2003T	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9999992	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	135699991	12A2p6	cell line	sgMsh2	135699991	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	64	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A3313G:p.N1105D	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9964035	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	135700639	12A2p6	cell line	sgMsh2	135700639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	201	0	0	NA	exonic	Mki67	nonsynonymous SNV	Mki67:NM_001081117:exon12:c.A2665G:p.R889G	7qF3	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999983	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	139511443	12A2p6	cell line	sgMsh2	139511443	A	-	Deletion	Mutect2;Vardict	2	0.175	109	0	0	NA	exonic	Inpp5a	frameshift deletion	"Inpp5a:NM_001127363:exon5:c.342delA:p.N116Tfs*65,Inpp5a:NM_001355162:exon5:c.366delA:p.N124Tfs*65,Inpp5a:NM_183144:exon5:c.342delA:p.N116Tfs*65"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.817705016	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr7	139654645	12A2p6	cell line	sgMsh2	139654645	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.218	92	0	0	NA	exonic	Cfap46	nonsynonymous SNV	Cfap46:NM_001302546:exon17:c.A2038T:p.I680F	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9992465	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	139976647	12A2p6	cell line	sgMsh2	139976647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	65	0	0	NA	exonic	Spef1l	synonymous SNV	"Spef1l:NM_001033465:exon4:c.T426C:p.A142A,Spef1l:NM_001347613:exon4:c.T426C:p.A142A,Spef1l:NM_001347614:exon4:c.T426C:p.A142A,Spef1l:NM_001359836:exon4:c.T426C:p.A142A"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	139985890	12A2p6	cell line	sgMsh2	139985890	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	228	0	0	NA	exonic	Adam8	nonsynonymous SNV	"Adam8:NM_001291066:exon17:c.G1805A:p.S602N,Adam8:NM_007403:exon17:c.G1808A:p.S603N"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.275683405	3	1.33E-09	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	140031137	12A2p6	cell line	sgMsh2	140031137	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.096	76	0	0	NA	exonic	Tubgcp2	synonymous SNV	"Tubgcp2:NM_001286007:exon4:c.T330C:p.A110A,Tubgcp2:NM_001286009:exon4:c.T330C:p.A110A,Tubgcp2:NM_133755:exon4:c.T330C:p.A110A"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.448569609	2	0.8859719	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	140220515	12A2p6	cell line	sgMsh2	140220515	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	79	0	0	NA	exonic	Cd163l1	nonsynonymous SNV	Cd163l1:NM_172909:exon2:c.T208G:p.C70G	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9980418	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	140248153	12A2p6	cell line	sgMsh2	140248153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	130	0	0	NA	exonic	5830411N06Rik	synonymous SNV	"5830411N06Rik:NM_001128145:exon2:c.T273C:p.P91P,5830411N06Rik:NM_001128146:exon2:c.T273C:p.P91P,5830411N06Rik:NM_175533:exon2:c.T273C:p.P91P"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.99991	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr7	140299709	12A2p6	cell line	sgMsh2	140299709	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.285	19	0	0	NA	exonic	5830411N06Rik	nonsynonymous SNV	"5830411N06Rik:NM_001128145:exon13:c.G2909A:p.S970N,5830411N06Rik:NM_001128146:exon16:c.G3257A:p.S1086N"	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9571948	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	140400943	12A2p6	cell line	sgMsh2	140400943	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	371	0	0	NA	exonic	Olfr531	synonymous SNV	Olfr531:NM_146953:exon1:c.T102A:p.A34A	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9999989	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	140861417	12A2p6	cell line	sgMsh2	140861417	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	74	0	0	NA	exonic	Ric8a	nonsynonymous SNV	Ric8a:NM_053194:exon8:c.G1329T:p.E443D	7qF4	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9979409	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	141088650	12A2p6	cell line	sgMsh2	141088650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	22	0	0	NA	exonic	Pkp3	nonsynonymous SNV	"Pkp3:NM_019762:exon8:c.A1736G:p.E579G,Pkp3:NM_001162924:exon9:c.A1811G:p.E604G"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9635712	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	141091981	12A2p6	cell line	sgMsh2	141091981	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	39	0	0	NA	exonic	Sigirr	synonymous SNV	"Sigirr:NM_001355055:exon9:c.T888G:p.S296S,Sigirr:NM_023059:exon9:c.T888G:p.S296S"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9856008	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr7	141357561	12A2p6	cell line	sgMsh2	141357561	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	55	0	0	NA	exonic	Eps8l2	frameshift deletion	Eps8l2:NM_133191:exon13:c.1087delA:p.S363Afs*3	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.98591862	NA	NA	CAG	frameshift	NA	NA	NA	-1
M7_p20	chr7	141401716	12A2p6	cell line	sgMsh2	141401716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	87	0	0	NA	exonic	Taldo1	synonymous SNV	Taldo1:NM_011528:exon5:c.A597G:p.A199A	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.654164013	2	0.9145068	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr7	141442988	12A2p6	cell line	sgMsh2	141442988	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	29	0	0	NA	exonic	Pidd1	nonsynonymous SNV	Pidd1:NM_022654:exon2:c.T290A:p.L97H	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9750797	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	141513776	12A2p6	cell line	sgMsh2	141513776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	51	0	0	NA	exonic	Chid1	nonsynonymous SNV	"Chid1:NM_001369350:exon9:c.A815G:p.Y272C,Chid1:NM_001142681:exon10:c.A917G:p.Y306C,Chid1:NM_001369351:exon10:c.A917G:p.Y306C,Chid1:NM_001369352:exon10:c.A917G:p.Y306C"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9925877	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	141639063	12A2p6	cell line	sgMsh2	141639063	T	G	SNV	Mutect2;MuSe;Vardict	3	0.052	1086	0	0	NA	exonic	Muc6	nonsynonymous SNV	Muc6:NM_001368953:exon31:c.A5381C:p.N1794T	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	0.242975205	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr7	141647548	12A2p6	cell line	sgMsh2	141647548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	114	0	0	NA	exonic	Muc6	nonsynonymous SNV	"Muc6:NM_001330001:exon19:c.A2365G:p.T789A,Muc6:NM_001368953:exon19:c.A2365G:p.T789A"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	2	1	1	0.9997797	GTG	nonsynonymous	G	5	GGGGG	NA
M7_p20	chr7	143693865	12A2p6	cell line	sgMsh2	143693865	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	125	0	0	NA	exonic	Osbpl5	synonymous SNV	"Osbpl5:NM_001199227:exon19:c.C2163T:p.A721A,Osbpl5:NM_001384163:exon19:c.C2199T:p.A733A,Osbpl5:NM_024289:exon19:c.C2235T:p.A745A"	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998809	GGG	synonymous	NA	NA	NA	NA
M7_p20	chr7	143764865	12A2p6	cell line	sgMsh2	143764865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	149	0	0	NA	exonic	Mrgprg	nonsynonymous SNV	Mrgprg:NM_203492:exon2:c.T509C:p.V170A	7qF5	chr7-104329818-145323643	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999689	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	3189231	12A2p6	cell line	sgMsh2	3189231	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	68	0	0	NA	exonic	Insr	nonsynonymous SNV	"Insr:NM_001330056:exon9:c.G1929C:p.K643N,Insr:NM_010568:exon9:c.G1929C:p.K643N"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9887323	ACT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	3429246	12A2p6	cell line	sgMsh2	3429246	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	223	0	0	NA	exonic	Arhgef18	nonsynonymous SNV	"Arhgef18:NM_133962:exon3:c.A83C:p.D28A,Arhgef18:NM_001370668:exon12:c.A1235C:p.D412A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999995	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	3476238	12A2p6	cell line	sgMsh2	3476238	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	66	0	0	NA	exonic	Tex45	synonymous SNV	Tex45:NM_029598:exon2:c.A390G:p.L130L	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9967828	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	3511725	12A2p6	cell line	sgMsh2	3511725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	281	0	0	NA	exonic	Mcoln1	nonsynonymous SNV	Mcoln1:NM_053177:exon11:c.T1274C:p.V425A	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.999272	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	3604493	12A2p6	cell line	sgMsh2	3604493	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	45	0	0	NA	exonic	Camsap3	nonsynonymous SNV	"Camsap3:NM_001163749:exon11:c.T2084G:p.L695R,Camsap3:NM_027171:exon11:c.T2081G:p.L694R,Camsap3:NM_001347112:exon12:c.T2129G:p.L710R,Camsap3:NM_001347113:exon12:c.T2114G:p.L705R,Camsap3:NM_001363240:exon12:c.T2132G:p.L711R,Camsap3:NM_001363241:exon12:c.T2117G:p.L706R,Camsap3:NM_001347111:exon13:c.T2162G:p.L721R,Camsap3:NM_001363239:exon13:c.T2165G:p.L722R"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9896629	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	4289852	12A2p6	cell line	sgMsh2	4289852	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	271	0	0	NA	exonic	Elavl1	synonymous SNV	Elavl1:NM_010485:exon6:c.C729T:p.G243G	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.747616015	2	0.9800806	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr8	4749614	12A2p6	cell line	sgMsh2	4749614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	161	0	0	NA	exonic	Shcbp1	synonymous SNV	Shcbp1:NM_011369:exon6:c.T861C:p.N287N	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999841	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr8	9971777	12A2p6	cell line	sgMsh2	9971777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	451	0	0	NA	exonic	Lig4	nonsynonymous SNV	"Lig4:NM_001377042:exon2:c.A2002G:p.S668G,Lig4:NM_176953:exon2:c.A2002G:p.S668G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.887794018	1	0.9999914	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	10506541	12A2p6	cell line	sgMsh2	10506541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	155	0	0	NA	exonic	Myo16	nonsynonymous SNV	Myo16:NM_001319151:exon26:c.A3001G:p.T1001A	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.570057211	2	0.9999464	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	11223048	12A2p6	cell line	sgMsh2	11223048	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.303	45	0	0	NA	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon28:c.T2046C:p.G682G	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9896629	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	11244386	12A2p6	cell line	sgMsh2	11244386	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	56	0	0	NA	exonic	Col4a1	synonymous SNV	Col4a1:NM_009931:exon10:c.A570T:p.P190P	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.668181813	2	0.6351946	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	11441269	12A2p6	cell line	sgMsh2	11441269	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	54	0	0	NA	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon40:c.A3667T:p.R1223W	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9937253	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	11448295	12A2p6	cell line	sgMsh2	11448295	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	exonic	Col4a2	nonsynonymous SNV	Col4a2:NM_009932:exon48:c.A5103C:p.Q1701H	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9988859	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	11561490	12A2p6	cell line	sgMsh2	11561490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	104	0	0	NA	exonic	Ing1	nonsynonymous SNV	"Ing1:NM_011919:exon2:c.T209C:p.V70A,Ing1:NM_001302451:exon3:c.T101C:p.V34A"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.677527013	2	0.9229571	GTA	nonsynonymous	ACTGC	11	ACTGCACTGCA	NA
M7_p20	chr8	11628529	12A2p6	cell line	sgMsh2	11628529	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	60	0	0	NA	exonic	Ankrd10	nonsynonymous SNV	"Ankrd10:NM_001167967:exon3:c.A362G:p.D121G,Ankrd10:NM_133971:exon3:c.A362G:p.D121G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9955059	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	11824593	12A2p6	cell line	sgMsh2	11824593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	120	0	0	NA	exonic	Arhgef7	synonymous SNV	"Arhgef7:NM_001113518:exon18:c.T1752C:p.L584L,Arhgef7:NM_001372326:exon18:c.T1752C:p.L584L,Arhgef7:NM_001113517:exon19:c.T2223C:p.L741L,Arhgef7:NM_001372321:exon19:c.T2223C:p.L741L"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998425	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr8	12624927	12A2p6	cell line	sgMsh2	12624927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	127	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon19:c.A2192G:p.E731G	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998935	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	13094170	12A2p6	cell line	sgMsh2	13094170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	234	0	0	NA	exonic	Pcid2	synonymous SNV	Pcid2:NM_178708:exon6:c.A336G:p.A112A	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999997	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	13308355	12A2p6	cell line	sgMsh2	13308355	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	66	0	0	NA	exonic	Tmco3	nonsynonymous SNV	"Tmco3:NM_001364217:exon8:c.T1232C:p.I411T,Tmco3:NM_172282:exon8:c.T1235C:p.I412T"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.756961215	1	0.687489	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	13455186	12A2p6	cell line	sgMsh2	13455186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	149	0	0	NA	exonic	Tmem255b	nonsynonymous SNV	"Tmem255b:NM_001143672:exon5:c.T427C:p.Y143H,Tmem255b:NM_001143671:exon6:c.T490C:p.Y164H"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.943865219	1	0.9995896	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	13764591	12A2p6	cell line	sgMsh2	13764591	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	297	0	0	NA	exonic	Cdc16	nonsynonymous SNV	"Cdc16:NM_001357247:exon7:c.T374G:p.V125G,Cdc16:NM_027276:exon8:c.T656G:p.V219G"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.593420212	2	9.43E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	14962630	12A2p6	cell line	sgMsh2	14962630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	313	0	0	NA	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon16:c.A1820G:p.N607S,Arhgef10:NM_172751:exon17:c.A1937G:p.N646S"	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.99993642	1	4.25E-09	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	15929088	12A2p6	cell line	sgMsh2	15929088	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	107	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon55:c.A8495T:p.Y2832F	8qA1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996742	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22027710	12A2p6	cell line	sgMsh2	22027710	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	179	0	0	NA	exonic	Atp7b	nonsynonymous SNV	Atp7b:NM_007511:exon2:c.A1111G:p.T371A	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.873776217	1	0.9938579	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22157199	12A2p6	cell line	sgMsh2	22157199	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.1	115	0	0	NA	exonic	Nek3	nonsynonymous SNV	"Nek3:NM_001162947:exon5:c.A406G:p.N136D,Nek3:NM_011848:exon6:c.A406G:p.N136D"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.467260009	2	0.9767732	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9976978	CAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22284916	12A2p6	cell line	sgMsh2	22284916	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	234	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon2:c.A1G:p.M1V	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.920502218	1	0.9999167	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22365925	12A2p6	cell line	sgMsh2	22365925	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	586	0	0	NA	exonic	Tpte	nonsynonymous SNV	Tpte:NM_199257:exon26:c.C1740G:p.D580E	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.742943415	2	0.9999912	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22558951	12A2p6	cell line	sgMsh2	22558951	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	149	0	0	NA	exonic	Slc20a2	nonsynonymous SNV	Slc20a2:NM_011394:exon6:c.T623G:p.L208R	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.742943415	2	0.807857	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22561194	12A2p6	cell line	sgMsh2	22561194	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	79	0	0	NA	exonic	Slc20a2	synonymous SNV	Slc20a2:NM_011394:exon8:c.T1242C:p.S414S	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.546694211	2	0.9890032	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	22768462	12A2p6	cell line	sgMsh2	22768462	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	99	0	0	NA	exonic	Plat	nonsynonymous SNV	Plat:NM_008872:exon3:c.T80A:p.F27Y	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.644818813	2	0.9631829	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	22939941	12A2p6	cell line	sgMsh2	22939941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	300	0	0	NA	exonic	Kat6a	nonsynonymous SNV	"Kat6a:NM_001364449:exon17:c.A5311G:p.S1771G,Kat6a:NM_001081149:exon18:c.A5311G:p.S1771G"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9999971	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	23064995	12A2p6	cell line	sgMsh2	23064995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	151	0	0	NA	exonic	Ank1	nonsynonymous SNV	"Ank1:NM_001110783:exon2:c.A170G:p.N57S,Ank1:NM_001277280:exon2:c.A170G:p.N57S,Ank1:NM_001277281:exon2:c.A59G:p.N20S,Ank1:NM_001277284:exon2:c.A59G:p.N20S,Ank1:NM_001277286:exon2:c.A83G:p.N28S,Ank1:NM_001277289:exon2:c.A83G:p.N28S,Ank1:NM_031158:exon2:c.A83G:p.N28S"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.761633815	2	0.6484801	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	25022626	12A2p6	cell line	sgMsh2	25022626	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	125	0	0	NA	exonic	Tm2d2	synonymous SNV	Tm2d2:NM_027194:exon4:c.A489G:p.G163G	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998809	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	25587349	12A2p6	cell line	sgMsh2	25587349	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	55	0	0	NA	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon5:c.A724G:p.N242D,Letm2:NM_001364070:exon5:c.A232G:p.N78D,Letm2:NM_001364071:exon5:c.A232G:p.N78D,Letm2:NM_173012:exon5:c.A724G:p.N242D"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9940646	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	25666073	12A2p6	cell line	sgMsh2	25666073	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	138	0	0	NA	exonic	Nsd3	nonsynonymous SNV	"Nsd3:NM_001081269:exon6:c.G1655T:p.R552M,Nsd3:NM_001001735:exon7:c.G1655T:p.R552M,Nsd3:NM_001308481:exon7:c.G1655T:p.R552M,Nsd3:NM_001308482:exon7:c.G1655T:p.R552M"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999424	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	25750747	12A2p6	cell line	sgMsh2	25750747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.47	141	0	0	NA	exonic	Ddhd2	stopgain	"Ddhd2:NM_001361595:exon4:c.457delA:p.I153fs*0,Ddhd2:NM_028102:exon4:c.457delA:p.I153fs*0"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	3	1	NA	NA	ATT	nonsynonymous	T	10	TTTTTTTTTT	-1
M7_p20	chr8	25769390	12A2p6	cell line	sgMsh2	25769390	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	62	0	0	NA	exonic	Bag4	synonymous SNV	Bag4:NM_026121:exon4:c.A780G:p.A260A	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.859758417	1	0.9442974	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	26160845	12A2p6	cell line	sgMsh2	26160845	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	170	0	0	NA	exonic	Thap1	nonsynonymous SNV	Thap1:NM_199042:exon2:c.A142G:p.T48A	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.364462807	3	0.9981638	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	27393303	12A2p6	cell line	sgMsh2	27393303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	183	0	0	NA	exonic	Chrnb3	nonsynonymous SNV	"Chrnb3:NM_027454:exon3:c.T226C:p.W76R,Chrnb3:NM_173212:exon4:c.T271C:p.W91R"	8qA2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.794342016	1	0.66166	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	33310740	12A2p6	cell line	sgMsh2	33310740	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	171	0	0	NA	exonic	Wrn	nonsynonymous SNV	"Wrn:NM_001122822:exon16:c.A1844C:p.D615A,Wrn:NM_011721:exon16:c.A1844C:p.D615A"	8qA3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.887794018	1	0.9966313	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	33334204	12A2p6	cell line	sgMsh2	33334204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	166	0	0	NA	exonic	Wrn	synonymous SNV	"Wrn:NM_001122822:exon7:c.T678C:p.D226D,Wrn:NM_011721:exon7:c.T678C:p.D226D"	8qA3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.827050216	1	0.9222337	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr8	33572354	12A2p6	cell line	sgMsh2	33572354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	202	0	0	NA	exonic	Tex15	nonsynonymous SNV	Tex15:NM_031374:exon1:c.A1811G:p.N604S	8qA3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999984	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	33834374	12A2p6	cell line	sgMsh2	33834374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	197	0	0	NA	exonic	Rbpms	synonymous SNV	"Rbpms:NM_001042674:exon5:c.A327G:p.K109K,Rbpms:NM_001042675:exon5:c.A327G:p.K109K,Rbpms:NM_001286168:exon5:c.A327G:p.K109K,Rbpms:NM_019733:exon5:c.A327G:p.K109K"	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999979	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr8	34841777	12A2p6	cell line	sgMsh2	34841777	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	341	0	0	NA	exonic	Tnks	nonsynonymous SNV	Tnks:NM_175091:exon22:c.A3327C:p.K1109N	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.99526382	1	2.11E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	36129007	12A2p6	cell line	sgMsh2	36129007	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	68	0	0	NA	exonic	Prag1	synonymous SNV	Prag1:NM_172911:exon4:c.C2091T:p.H697H	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9971223	ACC	synonymous	NA	NA	NA	NA
M7_p20	chr8	36584814	12A2p6	cell line	sgMsh2	36584814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	175	0	0	NA	exonic	Dlc1	nonsynonymous SNV	"Dlc1:NM_001194941:exon5:c.A511G:p.S171G,Dlc1:NM_015802:exon5:c.A409G:p.S137G,Dlc1:NM_001194940:exon9:c.A1762G:p.S588G"	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.822377616	1	0.09586125	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	40380689	12A2p6	cell line	sgMsh2	40380689	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	269	0	0	NA	exonic	Micu3	nonsynonymous SNV	Micu3:NM_030110:exon13:c.G1363A:p.V455I	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.728925614	2	0.9955165	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	40912583	12A2p6	cell line	sgMsh2	40912583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	163	0	0	NA	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon9:c.A1402G:p.M468V,Slc7a2:NM_007514:exon9:c.A1399G:p.M467V"	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.775651615	2	0.5296613	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	40985696	12A2p6	cell line	sgMsh2	40985696	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	153	0	0	NA	exonic	Pdgfrl	nonsynonymous SNV	Pdgfrl:NM_026840:exon4:c.T668C:p.I223T	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.322409406	3	0.9999337	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	41200590	12A2p6	cell line	sgMsh2	41200590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	83	0	0	NA	exonic	Fgl1	nonsynonymous SNV	Fgl1:NM_145594:exon4:c.T265C:p.Y89H	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.864431017	1	0.9614338	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	41343555	12A2p6	cell line	sgMsh2	41343555	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	374	0	0	NA	exonic	Asah1	synonymous SNV	Asah1:NM_019734:exon12:c.A1002G:p.T334T	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	1.11E-09	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	43569504	12A2p6	cell line	sgMsh2	43569504	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	683	0	0	NA	exonic	Adam26a	synonymous SNV	Adam26a:NM_010085:exon2:c.T948G:p.L316L	8qA4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	1	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr8	45010006	12A2p6	cell line	sgMsh2	45010006	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.108	58	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon4:c.G3859A:p.A1287T	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.50464081	2	0.9554845	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	45277024	12A2p6	cell line	sgMsh2	45277024	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	144	0	0	NA	exonic	Klkb1	nonsynonymous SNV	Klkb1:NM_008455:exon8:c.A819C:p.E273D	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999588	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	45772633	12A2p6	cell line	sgMsh2	45772633	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	182	0	0	NA	exonic	Sorbs2	nonsynonymous SNV	"Sorbs2:NM_001310708:exon8:c.C572T:p.A191V,Sorbs2:NM_001205219:exon11:c.C779T:p.A260V,Sorbs2:NM_001310707:exon11:c.C710T:p.A237V,Sorbs2:NM_172752:exon11:c.C779T:p.A260V"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.855085817	1	0.9835069	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	45943338	12A2p6	cell line	sgMsh2	45943338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	198	0	0	NA	exonic	Ccdc110	synonymous SNV	Ccdc110:NM_001033246:exon6:c.A2265T:p.I755I	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.799014616	1	0.6991839	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	46170111	12A2p6	cell line	sgMsh2	46170111	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	272	0	0	NA	exonic	Cfap97	frameshift deletion	"Cfap97:NM_001357215:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_025747:exon2:c.537delA:p.N182Tfs*1,Cfap97:NM_001357216:exon3:c.537delA:p.N182Tfs*1"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M7_p20	chr8	46531903	12A2p6	cell line	sgMsh2	46531903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	111	0	0	NA	exonic	Acsl1	nonsynonymous SNV	"Acsl1:NM_001302163:exon18:c.A1757G:p.Q586R,Acsl1:NM_007981:exon18:c.A1757G:p.Q586R"	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.714907814	2	0.8187927	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Vardict	2	0.161	108	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.752288615	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M7_p20	chr8	47822604	12A2p6	cell line	sgMsh2	47822604	T	C	SNV	Mutect2;Vardict	2	0.138	50	0	0	NA	exonic	Cldn24	synonymous SNV	Cldn24:NM_001111318:exon1:c.T462C:p.P154P	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.644818813	2	0.6538187	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	47858780	12A2p6	cell line	sgMsh2	47858780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	90	0	0	NA	exonic	Wwc2	synonymous SNV	Wwc2:NM_133791:exon15:c.T2347C:p.L783L	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.682199614	2	0.8511861	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	47883537	12A2p6	cell line	sgMsh2	47883537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	126	0	0	NA	exonic	Wwc2	nonsynonymous SNV	Wwc2:NM_133791:exon6:c.A689G:p.K230R	8qB1.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.677527013	2	0.9689653	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	53587238	12A2p6	cell line	sgMsh2	53587238	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	83	0	0	NA	exonic	Neil3	nonsynonymous SNV	Neil3:NM_146208:exon10:c.T1728A:p.N576K	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	3	1	1	0.9987542	AAT	nonsynonymous	A	6	AAAAAA	NA
M7_p20	chr8	53608826	12A2p6	cell line	sgMsh2	53608826	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	263	0	0	NA	exonic	Neil3	synonymous SNV	Neil3:NM_146208:exon4:c.G519A:p.Q173Q	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999999	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr8	54665014	12A2p6	cell line	sgMsh2	54665014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	289	0	0	NA	exonic	Wdr17	nonsynonymous SNV	"Wdr17:NM_001372376:exon8:c.A584G:p.K195R,Wdr17:NM_001372374:exon9:c.A1109G:p.K370R,Wdr17:NM_001372375:exon10:c.A872G:p.K291R,Wdr17:NM_001364215:exon11:c.A1424G:p.K475R,Wdr17:NM_001172152:exon12:c.A1646G:p.K549R,Wdr17:NM_001372373:exon12:c.A1646G:p.K549R,Wdr17:NM_001372370:exon13:c.A1718G:p.K573R,Wdr17:NM_001372371:exon13:c.A1718G:p.K573R,Wdr17:NM_001372372:exon13:c.A1718G:p.K573R,Wdr17:NM_028220:exon13:c.A1667G:p.K556R"	8qB1.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9998812	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	55871464	12A2p6	cell line	sgMsh2	55871464	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	157	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.T1954C:p.F652L	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999801	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	55873143	12A2p6	cell line	sgMsh2	55873143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	228	0	0	NA	exonic	Adam29	nonsynonymous SNV	Adam29:NM_175939:exon2:c.A275G:p.Y92C	8qB2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999996	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	60922977	12A2p6	cell line	sgMsh2	60922977	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	383	0	0	NA	exonic	Clcn3	synonymous SNV	"Clcn3:NM_007711:exon10:c.T1788C:p.A596A,Clcn3:NM_173876:exon10:c.T1881C:p.A627A,Clcn3:NM_173873:exon11:c.T1962C:p.A654A,Clcn3:NM_173874:exon11:c.T1962C:p.A654A"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9998889	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	60933131	12A2p6	cell line	sgMsh2	60933131	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	179	0	0	NA	exonic	Clcn3	nonsynonymous SNV	"Clcn3:NM_007711:exon6:c.T712C:p.F238L,Clcn3:NM_173876:exon6:c.T805C:p.F269L,Clcn3:NM_173873:exon7:c.T886C:p.F296L,Clcn3:NM_173874:exon7:c.T886C:p.F296L"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999942	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	61124279	12A2p6	cell line	sgMsh2	61124279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	89	0	0	NA	exonic	Nek1	nonsynonymous SNV	"Nek1:NM_001293639:exon29:c.A3218G:p.N1073S,Nek1:NM_175089:exon30:c.A3293G:p.N1098S,Nek1:NM_001293638:exon31:c.A3377G:p.N1126S,Nek1:NM_001293637:exon32:c.A3509G:p.N1170S"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.845740617	1	0.9420032	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	61349484	12A2p6	cell line	sgMsh2	61349484	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	101	0	0	NA	exonic	Sh3rf1	nonsynonymous SNV	Sh3rf1:NM_021506:exon5:c.G850A:p.A284T	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9995444	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	61515964	12A2p6	cell line	sgMsh2	61515964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	102	0	0	NA	exonic	Palld	synonymous SNV	"Palld:NM_001293774:exon10:c.A1590G:p.P530P,Palld:NM_001081390:exon18:c.A3099G:p.P1033P,Palld:NM_001293773:exon18:c.A2607G:p.P869P,Palld:NM_001293772:exon20:c.A3825G:p.P1275P"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.9929955	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	64968763	12A2p6	cell line	sgMsh2	64968763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	198	0	0	NA	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T595A:p.Y199N,Tmem192:NM_028427:exon6:c.T730A:p.Y244N"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.999998	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	64968767	12A2p6	cell line	sgMsh2	64968767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	195	0	0	NA	exonic	Tmem192	nonsynonymous SNV	"Tmem192:NM_001163747:exon5:c.T599C:p.L200P,Tmem192:NM_028427:exon6:c.T734C:p.L245P"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999976	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	64983490	12A2p6	cell line	sgMsh2	64983490	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	103	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A307G:p.T103A	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9995926	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	64983657	12A2p6	cell line	sgMsh2	64983657	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	132	0	0	NA	exonic	Trim75	nonsynonymous SNV	Trim75:NM_001033429:exon2:c.A140G:p.Q47R	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.845740617	1	0.9587663	CTG	nonsynonymous	CTGCC	11	CTGCCCTGCCC	NA
M7_p20	chr8	65001561	12A2p6	cell line	sgMsh2	65001561	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	172	0	0	NA	exonic	Trim60	nonsynonymous SNV	Trim60:NM_153097:exon2:c.A35G:p.K12R	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.668181813	2	0.9973743	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	65086574	12A2p6	cell line	sgMsh2	65086574	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	244	0	0	NA	exonic	Smim31	nonsynonymous SNV	Smim31:NM_001352886:exon3:c.A202G:p.T68A	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	66704576	12A2p6	cell line	sgMsh2	66704576	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	135	0	0	NA	exonic	Npy1r	nonsynonymous SNV	"Npy1r:NM_010934:exon2:c.T647G:p.V216G,Npy1r:NM_001358955:exon3:c.T647G:p.V216G"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999319	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	66704873	12A2p6	cell line	sgMsh2	66704873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	252	0	0	NA	exonic	Npy1r	synonymous SNV	"Npy1r:NM_010934:exon3:c.T834C:p.L278L,Npy1r:NM_001358955:exon4:c.T834C:p.L278L"	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999999	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	66883578	12A2p6	cell line	sgMsh2	66883578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	352	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon5:c.T1156C:p.Y386H	8qB3.1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9998032	ATA	nonsynonymous	AT	8	ATATATAT	NA
M7_p20	chr8	69102777	12A2p6	cell line	sgMsh2	69102777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	335	0	0	NA	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon7:c.T619C:p.C207R	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	1.95E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	69102822	12A2p6	cell line	sgMsh2	69102822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	348	0	0	NA	exonic	Atp6v1b2	nonsynonymous SNV	Atp6v1b2:NM_007509:exon7:c.T664C:p.Y222H	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9999995	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	69135832	12A2p6	cell line	sgMsh2	69135832	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	52	0	0	NA	exonic	Lzts1	nonsynonymous SNV	"Lzts1:NM_001370971:exon4:c.G1471T:p.G491W,Lzts1:NM_199364:exon5:c.G1471T:p.G491W"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9527329	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	69823579	12A2p6	cell line	sgMsh2	69823579	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	129	0	0	NA	exonic	Lpar2	nonsynonymous SNV	Lpar2:NM_020028:exon2:c.A17G:p.Y6C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.813032416	1	0.860557	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70078389	12A2p6	cell line	sgMsh2	70078389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	183	0	0	NA	exonic	Tm6sf2	nonsynonymous SNV	"Tm6sf2:NM_001293795:exon8:c.A791G:p.Y264C,Tm6sf2:NM_181540:exon8:c.A785G:p.Y262C"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.892466618	1	0.9979935	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70257220	12A2p6	cell line	sgMsh2	70257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	47	0	0	NA	exonic	Sugp2	synonymous SNV	"Sugp2:NM_001168290:exon7:c.T2490C:p.G830G,Sugp2:NM_172755:exon7:c.T2490C:p.G830G"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9907467	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	70294725	12A2p6	cell line	sgMsh2	70294725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	325	0	0	NA	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1064G:p.Y355C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.911157018	1	0.9999878	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70294744	12A2p6	cell line	sgMsh2	70294744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	277	0	0	NA	exonic	Ddx49	nonsynonymous SNV	Ddx49:NM_001024922:exon10:c.A1045G:p.I349V	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9998412	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70398314	12A2p6	cell line	sgMsh2	70398314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	85	0	0	NA	exonic	Crtc1	nonsynonymous SNV	Crtc1:NM_001004062:exon7:c.G647A:p.C216Y	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9899673	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70532667	12A2p6	cell line	sgMsh2	70532667	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	89	0	0	NA	exonic	Fkbp8	nonsynonymous SNV	"Fkbp8:NM_001111066:exon6:c.A833G:p.H278R,Fkbp8:NM_001199631:exon6:c.A833G:p.H278R,Fkbp8:NM_010223:exon6:c.A830G:p.H277R"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.999109	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	70608157	12A2p6	cell line	sgMsh2	70608157	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.429	9	0	0	NA	exonic	Ssbp4	synonymous SNV	"Ssbp4:NM_001372468:exon1:c.C24A:p.G8G,Ssbp4:NM_001372469:exon1:c.C24A:p.G8G,Ssbp4:NM_001372470:exon1:c.C24A:p.G8G,Ssbp4:NM_001372471:exon1:c.C24A:p.G8G,Ssbp4:NM_001372472:exon1:c.C24A:p.G8G,Ssbp4:NM_001372473:exon1:c.C24A:p.G8G,Ssbp4:NM_001372475:exon1:c.C24A:p.G8G,Ssbp4:NM_133772:exon1:c.C24A:p.G8G"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9268446	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr8	70917150	12A2p6	cell line	sgMsh2	70917150	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	29	0	0	NA	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon7:c.T2865C:p.S955S	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9750797	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	71349146	12A2p6	cell line	sgMsh2	71349146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	100	0	0	NA	exonic	Myo9b	nonsynonymous SNV	"Myo9b:NM_001142322:exon22:c.A3944C:p.D1315A,Myo9b:NM_001142323:exon22:c.A3944C:p.D1315A,Myo9b:NM_015742:exon23:c.A3911C:p.D1304A"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.52800381	2	0.998348	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71351019	12A2p6	cell line	sgMsh2	71351019	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	31	0	0	NA	exonic	Myo9b	synonymous SNV	"Myo9b:NM_001142322:exon24:c.C4146T:p.G1382G,Myo9b:NM_001142323:exon24:c.C4146T:p.G1382G,Myo9b:NM_015742:exon25:c.C4107T:p.G1369G"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.971900819	1	0.9709711	GCC	synonymous	NA	NA	NA	NA
M7_p20	chr8	71461316	12A2p6	cell line	sgMsh2	71461316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	68	0	0	NA	exonic	Abhd8	nonsynonymous SNV	Abhd8:NM_022419:exon2:c.G667A:p.A223T	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.649491413	2	0.8181209	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71507993	12A2p6	cell line	sgMsh2	71507993	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.096	82	0	0	NA	exonic	Plvap	nonsynonymous SNV	Plvap:NM_032398:exon3:c.C778T:p.P260S	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.448569609	2	0.8911811	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71562706	12A2p6	cell line	sgMsh2	71562706	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.334	9	0	0	NA	exonic	Nxnl1	nonsynonymous SNV	Nxnl1:NM_145598:exon2:c.A557G:p.Y186C	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9268446	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71620653	12A2p6	cell line	sgMsh2	71620653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	175	0	0	NA	exonic	Colgalt1	synonymous SNV	"Colgalt1:NM_001364443:exon7:c.T987C:p.T329T,Colgalt1:NM_146211:exon7:c.T987C:p.T329T"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999927	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr8	71641433	12A2p6	cell line	sgMsh2	71641433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	134	0	0	NA	exonic	Unc13a	synonymous SNV	Unc13a:NM_001029873:exon33:c.A4023G:p.V1341V	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.831722816	1	0.9298052	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	71679027	12A2p6	cell line	sgMsh2	71679027	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	256	0	0	NA	exonic	Jak3	nonsynonymous SNV	"Jak3:NM_001190830:exon4:c.C358A:p.L120M,Jak3:NM_010589:exon4:c.C358A:p.L120M"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.808359816	1	0.7737022	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71913129	12A2p6	cell line	sgMsh2	71913129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	232	0	0	NA	exonic	Zfp882	nonsynonymous SNV	Zfp882:NM_001166645:exon2:c.T11C:p.V4A	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.99059122	1	0.9999994	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	71965814	12A2p6	cell line	sgMsh2	71965814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	252	0	0	NA	exonic	Zfp961	synonymous SNV	Zfp961:NM_001164581:exon2:c.T87C:p.D29D	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr8	72002469	12A2p6	cell line	sgMsh2	72002469	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	122	0	0	NA	exonic	Cyp4f18	nonsynonymous SNV	Cyp4f18:NM_024444:exon3:c.T262A:p.C88S	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9932878	CAT	nonsynonymous	GCAT	8	GCATGCAT	NA
M7_p20	chr8	72204426	12A2p6	cell line	sgMsh2	72204426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	220	0	0	NA	exonic	Cib3	nonsynonymous SNV	Cib3:NM_001080812:exon5:c.T466C:p.F156L	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.49529561	2	0.999942	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	72468438	12A2p6	cell line	sgMsh2	72468438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	25	0	0	NA	exonic	Cherp	synonymous SNV	"Cherp:NM_001359024:exon6:c.A756G:p.V252V,Cherp:NM_138585:exon6:c.A723G:p.V241V"	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9690252	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	72741820	12A2p6	cell line	sgMsh2	72741820	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	139	0	0	NA	exonic	Sin3b	nonsynonymous SNV	Sin3b:NM_009188:exon8:c.T923C:p.V308A	8qB3.3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999456	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	75121622	12A2p6	cell line	sgMsh2	75121622	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.217	220	0	0	NA	exonic	Mcm5	frameshift deletion	"Mcm5:NM_001302540:exon12:c.1498delG:p.E501Rfs*15,Mcm5:NM_008566:exon12:c.1498delG:p.E501Rfs*15"	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M7_p20	chr8	79248398	12A2p6	cell line	sgMsh2	79248398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	153	0	0	NA	exonic	1700011L22Rik	nonsynonymous SNV	1700011L22Rik:NM_026315:exon1:c.A55G:p.T19A	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.644818813	2	0.9978928	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	79274268	12A2p6	cell line	sgMsh2	79274268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	154	0	0	NA	exonic	Mmaa	nonsynonymous SNV	"Mmaa:NM_133823:exon4:c.T560C:p.L187P,Mmaa:NM_001363471:exon5:c.T74C:p.L25P,Mmaa:NM_001363470:exon6:c.T560C:p.L187P,Mmaa:NM_001363472:exon6:c.T74C:p.L25P"	8qC1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9997289	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	80612038	12A2p6	cell line	sgMsh2	80612038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	184	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.A959G:p.D320G	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.756961215	2	0.8112743	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	80774950	12A2p6	cell line	sgMsh2	80774950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	178	0	0	NA	exonic	Gab1	synonymous SNV	"Gab1:NM_021356:exon7:c.A1666C:p.R556R,Gab1:NM_001301298:exon8:c.A1756C:p.R586R"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.448569609	2	0.9464874	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	80985050	12A2p6	cell line	sgMsh2	80985050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	150	0	0	NA	exonic	Usp38	synonymous SNV	Usp38:NM_027554:exon9:c.A2355G:p.S785S	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.677527013	2	0.9888611	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	82343311	12A2p6	cell line	sgMsh2	82343311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	252	0	0	NA	exonic	Il15	synonymous SNV	"Il15:NM_001254747:exon5:c.A123T:p.V41V,Il15:NM_008357:exon5:c.A123T:p.V41V"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9999671	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	83259307	12A2p6	cell line	sgMsh2	83259307	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	159	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.C1741T:p.R581W,Tbc1d9:NM_001111304:exon15:c.C2440T:p.R814W"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999822	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	83354721	12A2p6	cell line	sgMsh2	83354721	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	98	0	0	NA	exonic	Mgat4d	nonsynonymous SNV	Mgat4d:NM_026233:exon2:c.A102C:p.Q34H	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.855085817	1	0.958719	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	83424577	12A2p6	cell line	sgMsh2	83424577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	31	0	0	NA	exonic	Clgn	nonsynonymous SNV	"Clgn:NM_001329680:exon12:c.T964C:p.Y322H,Clgn:NM_001329627:exon13:c.T1498C:p.Y500H,Clgn:NM_009904:exon13:c.T1498C:p.Y500H"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9776579	ATA	nonsynonymous	A	6	AAAAAA	NA
M7_p20	chr8	83668275	12A2p6	cell line	sgMsh2	83668275	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	27	0	0	NA	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.T380C:p.L127P	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9722123	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	83668425	12A2p6	cell line	sgMsh2	83668425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	39	0	0	NA	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon2:c.A530G:p.H177R	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9520625	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	83669445	12A2p6	cell line	sgMsh2	83669445	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	67	0	0	NA	exonic	Ptger1	nonsynonymous SNV	Ptger1:NM_013641:exon3:c.G1130A:p.G377D	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9969573	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	83725997	12A2p6	cell line	sgMsh2	83725997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	222	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon11:c.A1161G:p.I387M,Adgre5:NM_001163031:exon11:c.A1155G:p.I385M,Adgre5:NM_001163030:exon12:c.A1308G:p.I436M,Adgre5:NM_011925:exon13:c.A1443G:p.I481M"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.948537819	1	0.9999822	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84090184	12A2p6	cell line	sgMsh2	84090184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon10:c.A1343G:p.Y448C	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9959796	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84093075	12A2p6	cell line	sgMsh2	84093075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	83	0	0	NA	exonic	Rfx1	nonsynonymous SNV	Rfx1:NM_009055:exon15:c.A2015G:p.Y672C	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.967228219	1	0.9971219	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84176098	12A2p6	cell line	sgMsh2	84176098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	30	0	0	NA	exonic	Nanos3	nonsynonymous SNV	"Nanos3:NM_001357361:exon1:c.G434A:p.R145H,Nanos3:NM_194059:exon1:c.G434A:p.R145H"	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9764031	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84253982	12A2p6	cell line	sgMsh2	84253982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	145	0	0	NA	exonic	Mri1	nonsynonymous SNV	Mri1:NM_026423:exon4:c.A830G:p.Y277C	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999611	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84673217	12A2p6	cell line	sgMsh2	84673217	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	168	0	0	NA	exonic	Nacc1	nonsynonymous SNV	Nacc1:NM_025788:exon6:c.T1370C:p.V457A	8qC2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.742943415	2	0.8676175	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84913049	12A2p6	cell line	sgMsh2	84913049	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	86	0	0	NA	exonic	Mast1	nonsynonymous SNV	Mast1:NM_019945:exon26:c.A3650C:p.Q1217P	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.733598215	2	0.5528333	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	84990752	12A2p6	cell line	sgMsh2	84990752	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	13	0	0	NA	exonic	Hook2	nonsynonymous SNV	"Hook2:NM_001167991:exon1:c.G45T:p.W15C,Hook2:NM_001363497:exon1:c.G45T:p.W15C,Hook2:NM_001363498:exon1:c.G45T:p.W15C,Hook2:NM_001372357:exon1:c.G45T:p.W15C,Hook2:NM_001372358:exon1:c.G45T:p.W15C,Hook2:NM_001372359:exon1:c.G45T:p.W15C,Hook2:NM_001372360:exon1:c.G45T:p.W15C,Hook2:NM_001372361:exon1:c.G22T:p.V8F,Hook2:NM_133255:exon1:c.G45T:p.W15C"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9410259	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	85055070	12A2p6	cell line	sgMsh2	85055070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	91	0	0	NA	exonic	Tnpo2	nonsynonymous SNV	"Tnpo2:NM_001122843:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364031:exon22:c.T2480C:p.M827T,Tnpo2:NM_001364032:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364033:exon22:c.T2450C:p.M817T,Tnpo2:NM_001364034:exon22:c.T2450C:p.M817T,Tnpo2:NM_001379096:exon22:c.T2480C:p.M827T,Tnpo2:NM_145390:exon22:c.T2480C:p.M827T"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.845740617	1	0.9429081	ATG	nonsynonymous	ATG	8	ATGATGAT	NA
M7_p20	chr8	85085445	12A2p6	cell line	sgMsh2	85085445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon4:c.T527C:p.L176P	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9998604	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	85359107	12A2p6	cell line	sgMsh2	85359107	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.159	114	0	0	NA	exonic	Mylk3	nonsynonymous SNV	"Mylk3:NM_001297612:exon3:c.T398C:p.V133A,Mylk3:NM_175441:exon3:c.T797C:p.V266A"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.742943415	2	0.6498582	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	86527358	12A2p6	cell line	sgMsh2	86527358	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	57	0	0	NA	exonic	Abcc12	frameshift deletion	Abcc12:NM_172912:exon20:c.2796delT:p.F932Lfs*7	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr8	87904495	12A2p6	cell line	sgMsh2	87904495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	50	0	0	NA	exonic	Zfp423	nonsynonymous SNV	Zfp423:NM_033327:exon2:c.G94A:p.A32T	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9921647	GCT	nonsynonymous	CTG	10	CTGCTGCTGC	NA
M7_p20	chr8	88308681	12A2p6	cell line	sgMsh2	88308681	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	147	0	0	NA	exonic	Adcy7	nonsynonymous SNV	"Adcy7:NM_001037723:exon5:c.T212G:p.L71R,Adcy7:NM_001037724:exon5:c.T212G:p.L71R,Adcy7:NM_001109756:exon5:c.T212G:p.L71R,Adcy7:NM_007406:exon5:c.T212G:p.L71R"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.719580414	2	0.9204684	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	88309697	12A2p6	cell line	sgMsh2	88309697	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.151	138	0	0	NA	exonic	Adcy7	synonymous SNV	"Adcy7:NM_001037723:exon6:c.T381C:p.P127P,Adcy7:NM_001037724:exon6:c.T381C:p.P127P,Adcy7:NM_001109756:exon6:c.T381C:p.P127P,Adcy7:NM_007406:exon6:c.T381C:p.P127P"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.705562614	2	0.941048	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr8	88746982	12A2p6	cell line	sgMsh2	88746982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	106	0	0	NA	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon16:c.A2282G:p.Y761C,Cyld:NM_173369:exon17:c.A2828G:p.Y943C,Cyld:NM_001128170:exon18:c.A2837G:p.Y946C,Cyld:NM_001128171:exon18:c.A2828G:p.Y943C"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.878448817	1	0.9819936	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	89032825	12A2p6	cell line	sgMsh2	89032825	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	79	0	0	NA	exonic	Sall1	nonsynonymous SNV	"Sall1:NM_001371070:exon2:c.G650A:p.G217E,Sall1:NM_001371069:exon3:c.G650A:p.G217E,Sall1:NM_021390:exon3:c.G650A:p.G217E"	8qC3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9984424	CCC	nonsynonymous	C	5	CCCCC	NA
M7_p20	chr8	90933831	12A2p6	cell line	sgMsh2	90933832	AT	GC	DBS	Mutect2;Vardict	2	0.2	286	0	0	NA	exonic	Chd9	nonframeshift substitution	"Chd9:NM_001310530:exon1:c.1418_1419GC:p.H473R,Chd9:NM_177224:exon3:c.1418_1419GC:p.H473R"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	90994482	12A2p6	cell line	sgMsh2	90994482	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.129	152	0	0	NA	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon12:c.A2897G:p.Y966C,Chd9:NM_177224:exon14:c.A2897G:p.Y966C"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.602765412	2	0.9996899	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	90994504	12A2p6	cell line	sgMsh2	90994504	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	148	0	0	NA	exonic	Chd9	synonymous SNV	"Chd9:NM_001310530:exon12:c.T2919C:p.T973T,Chd9:NM_177224:exon14:c.T2919C:p.T973T"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.52800381	2	0.9999465	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	91087019	12A2p6	cell line	sgMsh2	91087019	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	162	0	0	NA	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon7:c.A891T:p.L297F,Rbl2:NM_001282001:exon8:c.A1020T:p.L340F,Rbl2:NM_011250:exon8:c.A1020T:p.L340F"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.999985	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	91096777	12A2p6	cell line	sgMsh2	91096777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	162	0	0	NA	exonic	Rbl2	nonsynonymous SNV	"Rbl2:NM_001282000:exon10:c.A1332C:p.K444N,Rbl2:NM_011250:exon11:c.A1461C:p.K487N"	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.999985	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M7_p20	chr8	91220227	12A2p6	cell line	sgMsh2	91220227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	159	0	0	NA	exonic	Rpgrip1l	nonsynonymous SNV	Rpgrip1l:NM_173431:exon26:c.C3745T:p.H1249Y	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9988974	TGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	91401873	12A2p6	cell line	sgMsh2	91401873	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	145	0	0	NA	exonic	Fto	nonsynonymous SNV	Fto:NM_011936:exon2:c.T112C:p.F38L	8qC4	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.52800381	2	0.9999347	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	92678548	12A2p6	cell line	sgMsh2	92678548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	59	0	0	NA	exonic	Irx6	nonsynonymous SNV	"Irx6:NM_001301137:exon5:c.T1043C:p.L348S,Irx6:NM_022428:exon5:c.T1043C:p.L348S"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9952486	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	92830826	12A2p6	cell line	sgMsh2	92830826	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	144	0	0	NA	exonic	Mmp2	nonsynonymous SNV	Mmp2:NM_008610:exon2:c.A359G:p.D120G	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999588	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	93039553	12A2p6	cell line	sgMsh2	93039553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	104	0	0	NA	exonic	Ces1a	synonymous SNV	Ces1a:NM_001013764:exon4:c.A432G:p.L144L	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996147	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	94172860	12A2p6	cell line	sgMsh2	94172860	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	80	0	0	NA	exonic	Mt2	nonsynonymous SNV	Mt2:NM_008630:exon1:c.T13A:p.C5S	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9816718	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	94649777	12A2p6	cell line	sgMsh2	94649777	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	143	0	0	NA	exonic	Rspry1	nonsynonymous SNV	"Rspry1:NM_001359093:exon12:c.A1298C:p.D433A,Rspry1:NM_026274:exon12:c.A1298C:p.D433A"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.752288615	2	0.7076027	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	94671326	12A2p6	cell line	sgMsh2	94671326	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	113	0	0	NA	exonic	Arl2bp	nonsynonymous SNV	"Arl2bp:NM_024191:exon4:c.A239C:p.Q80P,Arl2bp:NM_024269:exon4:c.A206C:p.Q69P"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997671	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	94906038	12A2p6	cell line	sgMsh2	94906038	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	87	0	0	NA	exonic	Ccdc102a	nonsynonymous SNV	Ccdc102a:NM_001033533:exon7:c.A1310C:p.E437A	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.682199614	2	0.8344687	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	95003584	12A2p6	cell line	sgMsh2	95003584	C	-	Deletion	Strelka2;Vardict	2	0.2857	14	0	0	NA	exonic	Adgrg1	frameshift deletion	"Adgrg1:NM_001198894:exon3:c.398delC:p.P134Rfs*1,Adgrg1:NM_018882:exon3:c.398delC:p.P134Rfs*1"	8qC5	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M7_p20	chr8	95740989	12A2p6	cell line	sgMsh2	95740989	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	198	0	0	NA	exonic	Cnot1	synonymous SNV	"Cnot1:NM_001205226:exon32:c.T4494C:p.C1498C,Cnot1:NM_001372351:exon32:c.T4497C:p.C1499C,Cnot1:NM_001372353:exon32:c.T4515C:p.C1505C,Cnot1:NM_153164:exon32:c.T4500C:p.C1500C,Cnot1:NM_178078:exon32:c.T4500C:p.C1500C"	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.999998	AAC	synonymous	AAC	8	AACAACAA	NA
M7_p20	chr8	99031048	12A2p6	cell line	sgMsh2	99031048	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	180	0	0	NA	exonic	Cdh8	synonymous SNV	"Cdh8:NM_001039154:exon12:c.T1917A:p.V639V,Cdh8:NM_001285913:exon12:c.T1917A:p.V639V,Cdh8:NM_001285914:exon12:c.T1917A:p.V639V,Cdh8:NM_007667:exon12:c.T1917A:p.V639V"	8qD1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.756961215	2	0.7993363	GAA	synonymous	NA	NA	NA	NA
M7_p20	chr8	104322418	12A2p6	cell line	sgMsh2	104322418	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	92	0	0	NA	exonic	Cmtm2b	frameshift deletion	Cmtm2b:NM_028524:exon1:c.64delA:p.G23Afs*23	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr8	104484372	12A2p6	cell line	sgMsh2	104484372	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	42	0	0	NA	exonic	Terb1	nonsynonymous SNV	Terb1:NM_180958:exon12:c.A1022G:p.N341S	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9877977	ATT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr8	104619895	12A2p6	cell line	sgMsh2	104619895	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	48	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon6:c.T676C:p.Y226H,Cdh16:NM_001252628:exon7:c.T766C:p.Y256H,Cdh16:NM_007663:exon7:c.T766C:p.Y256H"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9912455	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	104621641	12A2p6	cell line	sgMsh2	104621641	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	54	0	0	NA	exonic	Cdh16	nonsynonymous SNV	"Cdh16:NM_001252627:exon5:c.T353C:p.L118P,Cdh16:NM_001252628:exon6:c.T443C:p.L148P,Cdh16:NM_007663:exon6:c.T443C:p.L148P"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9937253	GAG	nonsynonymous	AGGAAG	12	AGGAAGAGGAAG	NA
M7_p20	chr8	104741414	12A2p6	cell line	sgMsh2	104741414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	100	0	0	NA	exonic	Ces2a	stoploss	"Ces2a:NM_001190330:exon11:c.T1576C:p.X526Q,Ces2a:NM_133960:exon12:c.T1675C:p.X559Q"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9995182	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105178680	12A2p6	cell line	sgMsh2	105178680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	127	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.T253C:p.Y85H,Cbfb:NM_001161458:exon3:c.T253C:p.Y85H,Cbfb:NM_022309:exon3:c.T253C:p.Y85H"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.728925614	2	0.8132482	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105332119	12A2p6	cell line	sgMsh2	105332119	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	174	0	0	NA	exonic	Fhod1	nonsynonymous SNV	Fhod1:NM_177699:exon14:c.T2216C:p.L739P	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9997418	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105375733	12A2p6	cell line	sgMsh2	105375733	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	74	0	0	NA	exonic	Plekhg4	nonsynonymous SNV	"Plekhg4:NM_001081333:exon1:c.A353G:p.N118S,Plekhg4:NM_001364406:exon3:c.A461G:p.N154S"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	3	1	1	0.9979409	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105449702	12A2p6	cell line	sgMsh2	105449702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	133	0	0	NA	exonic	Lrrc36	nonsynonymous SNV	"Lrrc36:NM_001033371:exon5:c.A707G:p.Y236C,Lrrc36:NM_001170789:exon5:c.A713G:p.Y238C,Lrrc36:NM_001170788:exon8:c.A1076G:p.Y359C"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.644818813	2	0.9938657	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105452239	12A2p6	cell line	sgMsh2	105452239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	140	0	0	NA	exonic	Lrrc36	synonymous SNV	"Lrrc36:NM_001033371:exon6:c.T1065C:p.G355G,Lrrc36:NM_001170789:exon6:c.T1071C:p.G357G,Lrrc36:NM_001170788:exon9:c.T1434C:p.G478G"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.836395417	1	0.9431921	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	105468478	12A2p6	cell line	sgMsh2	105468478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	117	0	0	NA	exonic	Tppp3	synonymous SNV	Tppp3:NM_026481:exon2:c.A150T:p.V50V	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.700890014	2	0.09920133	TTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	105522199	12A2p6	cell line	sgMsh2	105522199	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	142	0	0	NA	exonic	Hsd11b2	nonsynonymous SNV	Hsd11b2:NM_008289:exon2:c.A322G:p.T108A	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.672854413	2	0.9871621	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	105700789	12A2p6	cell line	sgMsh2	105700789	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	75	0	0	NA	exonic	Acd	synonymous SNV	Acd:NM_001012638:exon2:c.T150A:p.P50P	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9980527	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	105708453	12A2p6	cell line	sgMsh2	105708453	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	123	0	0	NA	exonic	4933405L10Rik	synonymous SNV	"4933405L10Rik:NM_001357256:exon1:c.A22C:p.R8R,4933405L10Rik:NM_027655:exon1:c.A22C:p.R8R"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.551366811	2	0.9996678	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	180	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999945	GGC	synonymous	NA	NA	NA	NA
M7_p20	chr8	106011354	12A2p6	cell line	sgMsh2	106011354	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.142	41	0	0	NA	exonic	Ddx28	nonsynonymous SNV	Ddx28:NM_028038:exon1:c.T71C:p.L24P	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.663509213	1	0.5204828	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106092120	12A2p6	cell line	sgMsh2	106092120	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	206	0	0	NA	exonic	Nfatc3	nonsynonymous SNV	"Nfatc3:NM_001368796:exon4:c.A1493T:p.Q498L,Nfatc3:NM_001368797:exon4:c.A1469T:p.Q490L,Nfatc3:NM_010901:exon4:c.A1493T:p.Q498L"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.710235214	2	0.9922026	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106131676	12A2p6	cell line	sgMsh2	106131676	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	150	0	0	NA	exonic	Esrp2	nonsynonymous SNV	Esrp2:NM_176838:exon14:c.T2052G:p.F684L	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.728925614	2	0.8916847	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106131688	12A2p6	cell line	sgMsh2	106131688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	149	0	0	NA	exonic	Esrp2	synonymous SNV	Esrp2:NM_176838:exon14:c.A2040G:p.L680L	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.556039411	2	0.9999531	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr8	106219993	12A2p6	cell line	sgMsh2	106219993	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	152	0	0	NA	exonic	Prmt7	nonsynonymous SNV	Prmt7:NM_145404:exon4:c.T206C:p.L69P	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9986405	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106666236	12A2p6	cell line	sgMsh2	106666236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	109	0	0	NA	exonic	Cdh1	nonsynonymous SNV	Cdh1:NM_009864:exon15:c.T2351C:p.V784A	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9997087	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106692630	12A2p6	cell line	sgMsh2	106692630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	321	0	0	NA	exonic	Tango6	nonsynonymous SNV	Tango6:NM_173037:exon3:c.T808C:p.Y270H	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	106991441	12A2p6	cell line	sgMsh2	106991441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	200	0	0	NA	exonic	Sntb2	synonymous SNV	"Sntb2:NM_001368316:exon3:c.A780G:p.L260L,Sntb2:NM_009229:exon3:c.A780G:p.L260L"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.784996816	2	0.5083657	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	107058147	12A2p6	cell line	sgMsh2	107058147	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	161	0	0	NA	exonic	Nip7	nonsynonymous SNV	Nip7:NM_025391:exon4:c.A383G:p.Y128C	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.672854413	2	0.9944979	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	107065463	12A2p6	cell line	sgMsh2	107065463	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.096	84	0	0	NA	exonic	Tmed6	nonsynonymous SNV	Tmed6:NM_025458:exon1:c.C149T:p.P50L	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.448569609	2	0.8928159	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	84	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.981246019	1	0.9980862	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	108949466	12A2p6	cell line	sgMsh2	108949466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	66	0	0	NA	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.A7147G:p.T2383A	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.897139218	1	0.9744705	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	109548443	12A2p6	cell line	sgMsh2	109548443	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	139	0	0	NA	exonic	Dhx38	frameshift deletion	Dhx38:NM_178380:exon27:c.3643delG:p.E1215Sfs*2	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.822377616	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M7_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	421	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9999996	ACA	synonymous	NA	NA	NA	NA
M7_p20	chr8	109683676	12A2p6	cell line	sgMsh2	109683676	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	143	0	0	NA	exonic	Ist1	frameshift deletion	"Ist1:NM_001361562:exon2:c.88delA:p.T30Rfs*28,Ist1:NM_028018:exon2:c.88delA:p.T30Rfs*28"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
M7_p20	chr8	109723981	12A2p6	cell line	sgMsh2	109723981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	271	0	0	NA	exonic	Zfp821	nonsynonymous SNV	"Zfp821:NM_001363382:exon7:c.T605C:p.V202A,Zfp821:NM_001286393:exon8:c.T152C:p.V51A,Zfp821:NM_001363381:exon8:c.T605C:p.V202A,Zfp821:NM_001363383:exon8:c.T605C:p.V202A,Zfp821:NM_001363384:exon8:c.T152C:p.V51A,Zfp821:NM_001363386:exon8:c.T152C:p.V51A,Zfp821:NM_029468:exon8:c.T605C:p.V202A,Zfp821:NM_001167946:exon9:c.T605C:p.V202A,Zfp821:NM_001286391:exon9:c.T152C:p.V51A,Zfp821:NM_001363380:exon9:c.T605C:p.V202A,Zfp821:NM_001363385:exon9:c.T152C:p.V51A"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	3.49E-08	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	109803054	12A2p6	cell line	sgMsh2	109803054	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	221	0	0	NA	exonic	Ap1g1	synonymous SNV	"Ap1g1:NM_001301211:exon2:c.G105A:p.R35R,Ap1g1:NM_009677:exon2:c.G105A:p.R35R"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.925174818	1	0.9999089	GGT	synonymous	NA	NA	NA	NA
M7_p20	chr8	109940178	12A2p6	cell line	sgMsh2	109940178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	80	0	0	NA	exonic	Phlpp2	nonsynonymous SNV	Phlpp2:NM_001122594:exon19:c.G3338A:p.S1113N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.998527	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	110154658	12A2p6	cell line	sgMsh2	110154658	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	128	0	0	NA	exonic	Calb2	nonsynonymous SNV	"Calb2:NM_001368293:exon3:c.G256T:p.A86S,Calb2:NM_007586:exon3:c.G256T:p.A86S"	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9998993	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	110222125	12A2p6	cell line	sgMsh2	110222125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	268	0	0	NA	exonic	Cmtr2	nonsynonymous SNV	Cmtr2:NM_146215:exon2:c.T1066C:p.F356L	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.999991	CTT	nonsynonymous	TCCT	9	TCCTTCCTT	NA
M7_p20	chr8	110267353	12A2p6	cell line	sgMsh2	110267353	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	190	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon2:c.A18T:p.K6N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999969	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	110450342	12A2p6	cell line	sgMsh2	110450342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	49	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon21:c.A3029G:p.K1010R	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.775651615	1	0.8013197	AAG	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr8	110490782	12A2p6	cell line	sgMsh2	110490782	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	47	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon28:c.T4301A:p.I1434N	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.836395417	1	0.09098098	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	110609672	12A2p6	cell line	sgMsh2	110609672	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	147	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon87:c.G15080T:p.S5027I	8qD3	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999652	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	72	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9976978	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	111075417	12A2p6	cell line	sgMsh2	111075417	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.445	8	0	0	NA	exonic	Clec18a	synonymous SNV	Clec18a:NM_181549:exon5:c.T693C:p.C231C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9226809	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr8	111124575	12A2p6	cell line	sgMsh2	111124575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	263	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon12:c.T1565C:p.V522A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.845740617	1	0.9857886	GTC	nonsynonymous	TG	9	TGTGTGTGT	NA
M7_p20	chr8	111504389	12A2p6	cell line	sgMsh2	111504389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	205	0	0	NA	exonic	Wdr59	synonymous SNV	"Wdr59:NM_001170742:exon3:c.T186C:p.I62I,Wdr59:NM_001170743:exon3:c.T186C:p.I62I,Wdr59:NM_176923:exon3:c.T186C:p.I62I"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.906484418	1	0.999498	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr8	111504457	12A2p6	cell line	sgMsh2	111504457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	226	0	0	NA	exonic	Wdr59	nonsynonymous SNV	"Wdr59:NM_001170742:exon3:c.T118C:p.Y40H,Wdr59:NM_001170743:exon3:c.T118C:p.Y40H,Wdr59:NM_176923:exon3:c.T118C:p.Y40H"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9999891	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	111688682	12A2p6	cell line	sgMsh2	111688682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon5:c.A359C:p.D120A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9872844	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	111714373	12A2p6	cell line	sgMsh2	111714373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	173	0	0	NA	exonic	Bcar1	nonsynonymous SNV	"Bcar1:NM_001198839:exon5:c.A988G:p.T330A,Bcar1:NM_009954:exon5:c.A988G:p.T330A"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999919	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	112753904	12A2p6	cell line	sgMsh2	112753904	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	340	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon7:c.T982A:p.Y328N	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.869103617	1	0.9993461	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	113638823	12A2p6	cell line	sgMsh2	113638823	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	34	0	0	NA	exonic	Mon1b	nonsynonymous SNV	"Mon1b:NM_173015:exon3:c.G782A:p.R261H,Mon1b:NM_001048143:exon4:c.G782A:p.R261H"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9810433	CGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	113639059	12A2p6	cell line	sgMsh2	113639059	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	79	0	0	NA	exonic	Mon1b	frameshift deletion	"Mon1b:NM_173015:exon3:c.1018delG:p.G340Vfs*35,Mon1b:NM_001048143:exon4:c.1018delG:p.G340Vfs*35"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M7_p20	chr8	113737642	12A2p6	cell line	sgMsh2	113737642	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	196	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon15:c.A2183C:p.E728A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9999978	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	113775269	12A2p6	cell line	sgMsh2	113775269	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	211	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon5:c.C959T:p.T320I	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.883121418	1	0.9980507	TGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	116971476	12A2p6	cell line	sgMsh2	116971476	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	86	0	0	NA	exonic	1700030J22Rik	synonymous SNV	"1700030J22Rik:NM_001357253:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357254:exon3:c.T891C:p.T297T,1700030J22Rik:NM_001357255:exon3:c.T570C:p.T190T,1700030J22Rik:NM_027103:exon3:c.T891C:p.T297T"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9989464	CAG	synonymous	GTGG	9	GTGGGTGGG	NA
M7_p20	chr8	117596440	12A2p6	cell line	sgMsh2	117596440	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	44	0	0	NA	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon20:c.A2233G:p.M745V	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9890748	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	117663794	12A2p6	cell line	sgMsh2	117663794	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	78	0	0	NA	exonic	Sdr42e1	nonsynonymous SNV	"Sdr42e1:NM_001357273:exon3:c.T107A:p.I36N,Sdr42e1:NM_028725:exon3:c.T107A:p.I36N,Sdr42e1:NM_001357272:exon4:c.T107A:p.I36N"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9920905	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	117663826	12A2p6	cell line	sgMsh2	117663826	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	72	0	0	NA	exonic	Sdr42e1	synonymous SNV	"Sdr42e1:NM_001357273:exon3:c.C75G:p.G25G,Sdr42e1:NM_028725:exon3:c.C75G:p.G25G,Sdr42e1:NM_001357272:exon4:c.C75G:p.G25G"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.953210419	1	0.9935196	AGC	synonymous	NA	NA	NA	NA
M7_p20	chr8	117758891	12A2p6	cell line	sgMsh2	117758891	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	55	0	0	NA	exonic	Hsd17b2	frameshift deletion	Hsd17b2:NM_008290:exon5:c.1092delA:p.G367Vfs*10	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M7_p20	chr8	119596879	12A2p6	cell line	sgMsh2	119596879	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	82	0	0	NA	exonic	Dnaaf1	nonsynonymous SNV	Dnaaf1:NM_026648:exon11:c.A1606G:p.I536V	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.864431017	1	0.9609073	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	120674044	12A2p6	cell line	sgMsh2	120674044	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	117	0	0	NA	exonic	Cox4i1	nonsynonymous SNV	"Cox4i1:NM_001293559:exon5:c.G447T:p.K149N,Cox4i1:NM_009941:exon5:c.G558T:p.K186N"	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.556039411	2	0.9993787	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	87	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.962555619	1	0.9972833	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	122439655	12A2p6	cell line	sgMsh2	122439655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	89	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.A242G:p.Q81R	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.663509213	2	0.09841893	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	122622101	12A2p6	cell line	sgMsh2	122622101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	16	0	0	NA	exonic	Pabpn1l	synonymous SNV	Pabpn1l:NM_001007462:exon2:c.A267G:p.K89K	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9497451	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr8	122813653	12A2p6	cell line	sgMsh2	122813653	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	110	0	0	NA	exonic	Acsf3	nonsynonymous SNV	Acsf3:NM_144932:exon9:c.A1589G:p.D530G	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9997245	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	122865142	12A2p6	cell line	sgMsh2	122865142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	61	0	0	NA	exonic	Cdh15	nonsynonymous SNV	Cdh15:NM_007662:exon11:c.C1765T:p.P589S	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9957493	GCC	nonsynonymous	TGCC	8	TGCCTGCC	NA
M7_p20	chr8	122890651	12A2p6	cell line	sgMsh2	122890651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	85	0	0	NA	exonic	Ankrd11	nonsynonymous SNV	Ankrd11:NM_001081379:exon9:c.T6398C:p.L2133P	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.915829618	1	0.9899673	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	123200965	12A2p6	cell line	sgMsh2	123200965	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	105	0	0	NA	exonic	Dpep1	nonsynonymous SNV	Dpep1:NM_007876:exon11:c.A1139G:p.Y380C	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9996357	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	123282666	12A2p6	cell line	sgMsh2	123282666	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	350	0	0	NA	exonic	Fanca	nonsynonymous SNV	Fanca:NM_016925:exon29:c.T2786C:p.L929P	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9999995	CAG	nonsynonymous	TTCCAG	12	TTCCAGTTCCAG	NA
M7_p20	chr8	123305856	12A2p6	cell line	sgMsh2	123305856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	163	0	0	NA	exonic	Fanca	synonymous SNV	Fanca:NM_016925:exon11:c.T888C:p.P296P	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.859758417	1	0.983854	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	123421489	12A2p6	cell line	sgMsh2	123421489	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	426	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.C1160A:p.A387D	8qE1	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.869103617	1	0.9998282	GCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	124025157	12A2p6	cell line	sgMsh2	124025157	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	190	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon3:c.C228A:p.N76K,Urb2:NM_001368414:exon3:c.C228A:p.N76K"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.607438012	2	0.9999675	ACA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	124025166	12A2p6	cell line	sgMsh2	124025166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	188	0	0	NA	exonic	Urb2	synonymous SNV	"Urb2:NM_001029876:exon3:c.T237C:p.H79H,Urb2:NM_001368414:exon3:c.T237C:p.H79H"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.710235214	2	0.9858529	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr8	124028714	12A2p6	cell line	sgMsh2	124028714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1159C:p.F387L,Urb2:NM_001368414:exon4:c.T1159C:p.F387L"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.883121418	1	0.9981265	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	124030388	12A2p6	cell line	sgMsh2	124030388	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	164	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T2833C:p.C945R,Urb2:NM_001368414:exon4:c.T2833C:p.C945R"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.850413217	1	0.9746611	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	124728407	12A2p6	cell line	sgMsh2	124728407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	250	0	0	NA	exonic	Arv1	nonsynonymous SNV	"Arv1:NM_001368372:exon3:c.A358G:p.S120G,Arv1:NM_026855:exon3:c.A358G:p.S120G"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.817705016	1	0.8775114	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	125482101	12A2p6	cell line	sgMsh2	125482101	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	152	0	0	NA	exonic	Sipa1l2	nonsynonymous SNV	"Sipa1l2:NM_001081337:exon2:c.A1567G:p.R523G,Sipa1l2:NM_001357372:exon4:c.A1567G:p.R523G"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	1	1	0.9999737	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	40	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.808359816	1	0.8718676	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr8	126949307	12A2p6	cell line	sgMsh2	126949307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	103	0	0	NA	exonic	Rbm34	synonymous SNV	"Rbm34:NM_001374800:exon10:c.A1197G:p.A399A,Rbm34:NM_172762:exon11:c.A1257G:p.A419A"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.49529561	2	0.9949681	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr8	127474550	12A2p6	cell line	sgMsh2	127474550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	107	0	0	NA	exonic	Pard3	synonymous SNV	"Pard3:NM_001309392:exon21:c.A3303G:p.E1101E,Pard3:NM_001309391:exon22:c.A3348G:p.E1116E,Pard3:NM_001363431:exon22:c.A3258G:p.E1086E,Pard3:NM_001363432:exon22:c.A3354G:p.E1118E,Pard3:NM_033620:exon22:c.A3345G:p.E1115E"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	2	1	1	0.9996742	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr8	128497982	12A2p6	cell line	sgMsh2	128497982	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	84	0	0	NA	exonic	Nrp1	nonsynonymous SNV	"Nrp1:NM_001358959:exon14:c.A2204G:p.Y735C,Nrp1:NM_001358960:exon14:c.A2225G:p.Y742C,Nrp1:NM_008737:exon14:c.A2225G:p.Y742C"	8qE2	chr8-3154030-129138455	5	3	2	0.9	4.205340083	NA	1	0.934520019	1	0.9936069	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	3458787	12A2p6	cell line	sgMsh2	3458787	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.256	213	0	0	NA	exonic	Cwf19l2	frameshift insertion	Cwf19l2:NM_027545:exon15:c.2236dupT:p.L747Ffs*3	9qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TCT	frameshift	T	5	TTTTT	1
M7_p20	chr9	3634650	12A2p6	cell line	sgMsh2	3634650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	168	0	0	NA	exonic	Gucy1a2	synonymous SNV	Gucy1a2:NM_001033322:exon4:c.T693C:p.G231G	9qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr9	4308732	12A2p6	cell line	sgMsh2	4308732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	225	0	0	NA	exonic;splicing	Aasdhppt;Aasdhppt	nonsynonymous SNV	Aasdhppt:NM_026276:exon2:c.T371C:p.V124A	9qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	4309405	12A2p6	cell line	sgMsh2	4309405	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	59	0	0	NA	exonic	Aasdhppt	nonsynonymous SNV	"Aasdhppt:NM_001326359:exon1:c.T32C:p.V11A,Aasdhppt:NM_026276:exon1:c.T32C:p.V11A"	9qA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	4384088	12A2p6	cell line	sgMsh2	4384088	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	73	0	0	NA	exonic	Msantd4	synonymous SNV	Msantd4:NM_145609:exon2:c.A408G:p.G136G	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9975783	GAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	4664969	12A2p6	cell line	sgMsh2	4664969	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.226	95	0	0	NA	exonic	Gria4	frameshift insertion	"Gria4:NM_001113180:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_001113181:exon4:c.285dupT:p.G96Wfs*3,Gria4:NM_019691:exon4:c.285dupT:p.G96Wfs*3"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CCA	frameshift	A	5	AAAAA	1
M7_p20	chr9	5299382	12A2p6	cell line	sgMsh2	5299382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	162	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon2:c.A110G:p.Q37R	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9989921	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	5303669	12A2p6	cell line	sgMsh2	5303669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	217	0	0	NA	exonic	Casp1	nonsynonymous SNV	Casp1:NM_009807:exon6:c.T754C:p.S252P	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	5348935	12A2p6	cell line	sgMsh2	5348935	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	241	0	0	NA	exonic	Casp12	nonsynonymous SNV	Casp12:NM_009808:exon3:c.T296C:p.I99T	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	6992577	12A2p6	cell line	sgMsh2	6992577	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	67	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon82:c.T11983G:p.F3995V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	7114896	12A2p6	cell line	sgMsh2	7114896	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	222	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon44:c.T7261G:p.F2421V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9999932	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	7455659	12A2p6	cell line	sgMsh2	7455659	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	129	0	0	NA	exonic	Mmp3	nonsynonymous SNV	Mmp3:NM_010809:exon10:c.T1409C:p.I470T	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	7503275	12A2p6	cell line	sgMsh2	7503275	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	191	0	0	NA	exonic	Mmp10	nonsynonymous SNV	Mmp10:NM_019471:exon2:c.C235G:p.L79V	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.999997	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	8610048	12A2p6	cell line	sgMsh2	8610048	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	215	0	0	NA	exonic	Trpc6	synonymous SNV	"Trpc6:NM_001282086:exon2:c.T516C:p.Y172Y,Trpc6:NM_001282087:exon2:c.T516C:p.Y172Y,Trpc6:NM_013838:exon2:c.T516C:p.Y172Y"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999992	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	8901181	12A2p6	cell line	sgMsh2	8901181	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	17	0	0	NA	exonic	Pgr	frameshift deletion	Pgr:NM_008829:exon1:c.714delA:p.K239Rfs*72	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	9673855	12A2p6	cell line	sgMsh2	9673855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	136	0	0	NA	exonic	Cntn5	synonymous SNV	"Cntn5:NM_001033359:exon18:c.C2241T:p.Y747Y,Cntn5:NM_001170787:exon22:c.C2856T:p.Y952Y"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999356	TGT	synonymous	NA	NA	NA	NA
M7_p20	chr9	13782310	12A2p6	cell line	sgMsh2	13782310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	353	0	0	NA	exonic	Mtmr2	synonymous SNV	"Mtmr2:NM_001373873:exon2:c.T114C:p.H38H,Mtmr2:NM_023858:exon2:c.T114C:p.H38H"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.35E-09	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr9	13810656	12A2p6	cell line	sgMsh2	13810656	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	186	0	0	NA	exonic	Cep57	synonymous SNV	"Cep57:NM_001310721:exon8:c.T1017C:p.T339T,Cep57:NM_026665:exon9:c.T1095C:p.T365T"	9qA1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	14786962	12A2p6	cell line	sgMsh2	14786962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	337	0	0	NA	exonic	Mre11a	synonymous SNV	"Mre11a:NM_001310728:exon3:c.T105C:p.D35D,Mre11a:NM_018736:exon3:c.T105C:p.D35D"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.85E-09	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr9	15330553	12A2p6	cell line	sgMsh2	15330553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	127	0	0	NA	exonic	Cep295	nonsynonymous SNV	Cep295:NM_176976:exon17:c.A5476G:p.T1826A	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998935	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	15600919	12A2p6	cell line	sgMsh2	15600919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	179	0	0	NA	exonic	Deup1	nonsynonymous SNV	"Deup1:NM_001373919:exon5:c.A431G:p.K144R,Deup1:NM_001373920:exon5:c.A527G:p.K176R,Deup1:NM_001373917:exon6:c.A527G:p.K176R,Deup1:NM_001373921:exon6:c.A527G:p.K176R,Deup1:NM_181816:exon6:c.A527G:p.K176R,Deup1:NM_001373918:exon7:c.A464G:p.K155R"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999942	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	16029910	12A2p6	cell line	sgMsh2	16029910	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	123	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon6:c.T4096C:p.Y1366H	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9934472	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	18330705	12A2p6	cell line	sgMsh2	18330705	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	152	0	0	NA	exonic	Naalad2	nonsynonymous SNV	"Naalad2:NM_028279:exon16:c.C1788A:p.N596K,Naalad2:NM_001357400:exon18:c.C1902A:p.N634K,Naalad2:NM_001357399:exon19:c.C1902A:p.N634K"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	AGT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr9	18385835	12A2p6	cell line	sgMsh2	18385835	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	64	0	0	NA	exonic	Naalad2	nonsynonymous SNV	"Naalad2:NM_028279:exon1:c.A40G:p.I14V,Naalad2:NM_001357400:exon3:c.A154G:p.I52V,Naalad2:NM_001357399:exon4:c.A154G:p.I52V"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9964035	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	18409431	12A2p6	cell line	sgMsh2	18409431	-	A	Insertion	Strelka2;Vardict	2	0.2131	61	0	0	NA	exonic	Ubtfl1	frameshift insertion	"Ubtfl1:NM_001360216:exon2:c.255dupA:p.T88Nfs*4,Ubtfl1:NM_001033793:exon3:c.255dupA:p.T88Nfs*4"	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99573108	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
M7_p20	chr9	18945178	12A2p6	cell line	sgMsh2	18945178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.335	180	0	0	NA	exonic	Olfr832	frameshift deletion	Olfr832:NM_001011824:exon1:c.529delT:p.C179Vfs*23	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr9	19361193	12A2p6	cell line	sgMsh2	19361193	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	409	0	0	NA	exonic	Olfr846	nonsynonymous SNV	Olfr846:NM_146282:exon1:c.A161G:p.H54R	9qA2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.02E-09	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	19585277	12A2p6	cell line	sgMsh2	19585277	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.206	121	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.G739T:p.V247L	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.962555619	1	0.9993978	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	19585371	12A2p6	cell line	sgMsh2	19585371	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.195	117	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A833G:p.Y278C	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9954224	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	19808377	12A2p6	cell line	sgMsh2	19808377	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	350	0	0	NA	exonic	Olfr859	nonsynonymous SNV	Olfr859:NM_146526:exon1:c.G58T:p.D20Y	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.41E-09	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	20101525	12A2p6	cell line	sgMsh2	20101525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	120	0	0	NA	exonic	Olfr868	synonymous SNV	Olfr868:NM_146559:exon2:c.T765C:p.Y255Y	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998425	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	20285962	12A2p6	cell line	sgMsh2	20285962	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	161	0	0	NA	exonic	Olfr39	nonsynonymous SNV	Olfr39:NM_146825:exon2:c.A286G:p.K96E	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.252320405	3	2.91E-08	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	20300766	12A2p6	cell line	sgMsh2	20300766	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	242	0	0	NA	exonic	Olfr873	nonsynonymous SNV	Olfr873:NM_146561:exon1:c.A556C:p.N186H	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.971900819	1	0.9999986	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	20438356	12A2p6	cell line	sgMsh2	20438356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	118	0	0	NA	exonic	Zfp26	nonsynonymous SNV	"Zfp26:NM_001357809:exon10:c.T911G:p.L304R,Zfp26:NM_011753:exon10:c.T911G:p.L304R"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998239	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	20922368	12A2p6	cell line	sgMsh2	20922368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	153	0	0	NA	exonic	Dnmt1	synonymous SNV	"Dnmt1:NM_001199431:exon20:c.T1728C:p.D576D,Dnmt1:NM_001199432:exon20:c.T1371C:p.D457D,Dnmt1:NM_001199433:exon20:c.T1374C:p.D458D,Dnmt1:NM_001314011:exon20:c.T1749C:p.D583D,Dnmt1:NM_010066:exon20:c.T1725C:p.D575D"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999751	CAT	synonymous	TCA	8	TCATCATC	NA
M7_p20	chr9	21007720	12A2p6	cell line	sgMsh2	21007720	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	85	0	0	NA	exonic	Mrpl4	synonymous SNV	"Mrpl4:NM_001357899:exon7:c.T660C:p.S220S,Mrpl4:NM_023167:exon7:c.T642C:p.S214S"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9988859	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	21149856	12A2p6	cell line	sgMsh2	21149856	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.124	38	0	0	NA	exonic	Cdc37	nonsynonymous SNV	"Cdc37:NM_001378796:exon1:c.T2G:p.M1R,Cdc37:NM_016742:exon1:c.T2G:p.M1R"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.579402411	2	0.6779161	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	21233517	12A2p6	cell line	sgMsh2	21233517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	45	0	0	NA	exonic	Keap1	nonsynonymous SNV	"Keap1:NM_016679:exon2:c.T1196C:p.M399T,Keap1:NM_001110305:exon3:c.T1196C:p.M399T,Keap1:NM_001110306:exon3:c.T1196C:p.M399T,Keap1:NM_001110307:exon3:c.T1196C:p.M399T"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9896629	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	21305374	12A2p6	cell line	sgMsh2	21305374	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	62	0	0	NA	exonic	Ap1m2	nonsynonymous SNV	"Ap1m2:NM_001110300:exon5:c.T581G:p.I194S,Ap1m2:NM_009678:exon5:c.T581G:p.I194S"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	21723828	12A2p6	cell line	sgMsh2	21723828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	62	0	0	NA	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon1:c.T51C:p.A17A,Ldlr:NM_001252659:exon1:c.T51C:p.A17A,Ldlr:NM_010700:exon1:c.T51C:p.A17A"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9959796	CTG	synonymous	GCT	8	GCTGCTGC	NA
M7_p20	chr9	21739689	12A2p6	cell line	sgMsh2	21739689	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	0	0	NA	exonic	Ldlr	nonsynonymous SNV	"Ldlr:NM_001252658:exon10:c.A1402G:p.I468V,Ldlr:NM_001252659:exon10:c.A1399G:p.I467V,Ldlr:NM_010700:exon10:c.A1402G:p.I468V"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9952432	CAT	nonsynonymous	CAT	8	CATCATCA	NA
M7_p20	chr9	22036719	12A2p6	cell line	sgMsh2	22036719	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	exonic	Elavl3	nonsynonymous SNV	Elavl3:NM_010487:exon2:c.A151G:p.T51A	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9990771	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	22058114	12A2p6	cell line	sgMsh2	22058114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.399	12	0	0	NA	exonic	Zfp653	synonymous SNV	"Zfp653:NM_001310759:exon4:c.T855C:p.T285T,Zfp653:NM_177318:exon4:c.T855C:p.T285T"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9377897	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	22887892	12A2p6	cell line	sgMsh2	22887892	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	143	0	0	NA	exonic	Bbs9	stoploss	"Bbs9:NM_001360258:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_181316:exon22:c.2642delA:p.*881delinsCLE*,Bbs9:NM_001360259:exon23:c.2657delA:p.*886delinsCLE*,Bbs9:NM_178415:exon23:c.2642delA:p.*881delinsCLE*"	9qA3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAG	nonsynonymous	NA	NA	NA	-1
M7_p20	chr9	24658629	12A2p6	cell line	sgMsh2	24658629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	167	0	0	NA	exonic	Dpy19l2	nonsynonymous SNV	Dpy19l2:NM_001166207:exon9:c.A1027G:p.M343V	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	25483163	12A2p6	cell line	sgMsh2	25483163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	57	0	0	NA	exonic	Eepd1	nonsynonymous SNV	Eepd1:NM_026189:exon2:c.T722C:p.I241T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9946893	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	26768455	12A2p6	cell line	sgMsh2	26768455	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	226	0	0	NA	exonic	Glb1l2	stopgain	"Glb1l2:NM_001310768:exon12:c.C1179A:p.Y393X,Glb1l2:NM_153803:exon13:c.C1227A:p.Y409X"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	26825146	12A2p6	cell line	sgMsh2	26825146	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	167	0	0	NA	exonic	Glb1l3	nonsynonymous SNV	Glb1l3:NM_001113323:exon17:c.T1619C:p.M540T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999886	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	27082519	12A2p6	cell line	sgMsh2	27082519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	177	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon10:c.A674G:p.Y225C,Ncapd3:NM_178113:exon26:c.A3200G:p.Y1067C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999935	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	27319526	12A2p6	cell line	sgMsh2	27319526	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	194	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001326702:exon7:c.A824G:p.D275G,Igsf9b:NM_001384263:exon7:c.A824G:p.D275G,Igsf9b:NM_001384264:exon7:c.A824G:p.D275G"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999975	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	27328503	12A2p6	cell line	sgMsh2	27328503	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	57	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	"Igsf9b:NM_001384264:exon13:c.C1655A:p.T552N,Igsf9b:NM_001326702:exon14:c.C1843A:p.P615T,Igsf9b:NM_001384263:exon14:c.C1831A:p.P611T"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9946893	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	27331757	12A2p6	cell line	sgMsh2	27331757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	71	0	0	NA	exonic	Igsf9b	synonymous SNV	Igsf9b:NM_001326702:exon16:c.T2238C:p.T746T	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9975657	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2	2	0.222	27	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9722123	TCC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	29179195	12A2p6	cell line	sgMsh2	29179195	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	206	0	0	NA	exonic	Ntm	nonsynonymous SNV	"Ntm:NM_001357601:exon2:c.A227G:p.Y76C,Ntm:NM_001357602:exon2:c.A227G:p.Y76C,Ntm:NM_001357593:exon3:c.A227G:p.Y76C,Ntm:NM_001357597:exon3:c.A227G:p.Y76C,Ntm:NM_001357598:exon3:c.A227G:p.Y76C,Ntm:NM_001357603:exon3:c.A155G:p.Y52C,Ntm:NM_172290:exon3:c.A227G:p.Y76C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999987	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	31053521	12A2p6	cell line	sgMsh2	31053521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	237	0	0	NA	exonic	Zbtb44	nonsynonymous SNV	"Zbtb44:NM_001115130:exon2:c.C226T:p.H76Y,Zbtb44:NM_172765:exon2:c.C226T:p.H76Y"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	31327436	12A2p6	cell line	sgMsh2	31327436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	0	0	NA	exonic	Prdm10	nonsynonymous SNV	"Prdm10:NM_001368845:exon5:c.T623C:p.I208T,Prdm10:NM_001368846:exon5:c.T623C:p.I208T,Prdm10:NM_199315:exon6:c.T623C:p.I208T"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9976978	ATA	nonsynonymous	ATAG	8	ATAGATAG	NA
M7_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	52	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.992988	CGC	synonymous	NA	NA	NA	NA
M7_p20	chr9	31426949	12A2p6	cell line	sgMsh2	31426949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	146	0	0	NA	exonic	Tmem45b	nonsynonymous SNV	Tmem45b:NM_144936:exon6:c.A733G:p.T245A	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999632	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	32260136	12A2p6	cell line	sgMsh2	32260136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	262	0	0	NA	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon13:c.A4211G:p.Y1404C,Arhgap32:NM_001195632:exon22:c.A5258G:p.Y1753C,Arhgap32:NM_001370957:exon22:c.A5138G:p.Y1713C,Arhgap32:NM_001370958:exon23:c.A5180G:p.Y1727C"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	35214258	12A2p6	cell line	sgMsh2	35214258	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	188	0	0	NA	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon9:c.A1117G:p.M373V	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999965	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	35471141	12A2p6	cell line	sgMsh2	35471141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	132	0	0	NA	exonic	Cdon	nonsynonymous SNV	Cdon:NM_021339:exon9:c.A1996G:p.T666A	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99059122	1	0.9998819	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	36432891	12A2p6	cell line	sgMsh2	36432891	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	178	0	0	NA	exonic	Pate12	nonsynonymous SNV	Pate12:NM_001167586:exon2:c.C169T:p.L57F	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999939	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	36863526	12A2p6	cell line	sgMsh2	36863526	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	100	0	0	NA	exonic	Fez1	synonymous SNV	"Fez1:NM_001357610:exon5:c.G528A:p.Q176Q,Fez1:NM_001357611:exon5:c.G528A:p.Q176Q,Fez1:NM_001357613:exon5:c.G528A:p.Q176Q,Fez1:NM_001357614:exon5:c.G528A:p.Q176Q,Fez1:NM_183171:exon5:c.G528A:p.Q176Q,Fez1:NM_001357612:exon6:c.G528A:p.Q176Q"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.607438012	2	0.9886883	AGA	synonymous	NA	NA	NA	NA
M7_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	175	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999927	TAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	37804586	12A2p6	cell line	sgMsh2	37804586	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	476	0	0	NA	exonic	Olfr876	nonsynonymous SNV	Olfr876:NM_146883:exon1:c.T674C:p.L225P	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	37855276	12A2p6	cell line	sgMsh2	37855276	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.194	203	0	0	NA	exonic	Olfr877	frameshift insertion	Olfr877:NM_146417:exon1:c.458dupT:p.G155Wfs*16	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	NA	NA	AGT	frameshift	ATGGG	11	ATGGGATGGGA	1
M7_p20	chr9	37898061	12A2p6	cell line	sgMsh2	37898061	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	206	0	0	NA	exonic	Olfr145	nonsynonymous SNV	Olfr145:NM_146313:exon1:c.T656C:p.L219P	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9995114	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38061932	12A2p6	cell line	sgMsh2	38061932	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	392	0	0	NA	exonic	Olfr885	nonsynonymous SNV	Olfr885:NM_001011739:exon1:c.T611G:p.V204G	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.04E-09	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38109068	12A2p6	cell line	sgMsh2	38109068	T	C	SNV	Mutect2;MuSe;Vardict	3	0.061	524	0	0	NA	exonic	Olfr888	synonymous SNV	Olfr888:NM_146424:exon1:c.T381C:p.Y127Y	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.285028606	3	1	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	38116625	12A2p6	cell line	sgMsh2	38116625	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	261	0	0	NA	exonic	Olfr889	synonymous SNV	Olfr889:NM_146482:exon1:c.T828C:p.Y276Y	9qA4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr9	38179912	12A2p6	cell line	sgMsh2	38179912	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	79	0	0	NA	exonic	Olfr891	synonymous SNV	Olfr891:NM_146478:exon1:c.C910T:p.L304L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9984424	AGT	synonymous	NA	NA	NA	NA
M7_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	431	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	TTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	38658252	12A2p6	cell line	sgMsh2	38658252	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	172	0	0	NA	exonic	Olfr916	nonsynonymous SNV	Olfr916:NM_146784:exon1:c.A139C:p.I47L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999914	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38665297	12A2p6	cell line	sgMsh2	38665297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	258	0	0	NA	exonic	Olfr917	synonymous SNV	Olfr917:NM_001011864:exon1:c.T546C:p.P182P	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	synonymous	G	5	GGGGG	NA
M7_p20	chr9	38665642	12A2p6	cell line	sgMsh2	38665642	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	119	0	0	NA	exonic	Olfr917	synonymous SNV	Olfr917:NM_001011864:exon1:c.C201T:p.S67S	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.799014616	1	0.789656	AGG	synonymous	NA	NA	NA	NA
M7_p20	chr9	38698231	12A2p6	cell line	sgMsh2	38698231	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	281	0	0	NA	exonic	Olfr919	nonsynonymous SNV	Olfr919:NM_146440:exon1:c.T146C:p.M49T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	2.04E-08	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38723409	12A2p6	cell line	sgMsh2	38723409	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	211	0	0	NA	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon5:c.T512C:p.V171A,Vwa5a:NM_172767:exon6:c.T512C:p.V171A"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.747616015	2	0.9296021	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38728677	12A2p6	cell line	sgMsh2	38728677	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	221	0	0	NA	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon10:c.T1220C:p.V407A,Vwa5a:NM_172767:exon11:c.T1220C:p.V407A"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	GTT	nonsynonymous	AAGTT	12	AAGTTAAGTTAA	NA
M7_p20	chr9	38775808	12A2p6	cell line	sgMsh2	38775808	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	344	0	0	NA	exonic	Olfr921	nonsynonymous SNV	Olfr921:NM_146782:exon3:c.G552T:p.L184F	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.57E-09	TGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38848375	12A2p6	cell line	sgMsh2	38848375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	296	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A260G:p.N87S	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	9.37E-09	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38877830	12A2p6	cell line	sgMsh2	38877830	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	506	0	0	NA	exonic	Olfr926	nonsynonymous SNV	Olfr926:NM_146815:exon1:c.T653C:p.I218T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	38976449	12A2p6	cell line	sgMsh2	38976449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	192	0	0	NA	exonic	Olfr933	nonsynonymous SNV	Olfr933:NM_146441:exon1:c.A772G:p.M258V	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999972	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39184300	12A2p6	cell line	sgMsh2	39184300	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	291	0	0	NA	exonic	Olfr943	nonsynonymous SNV	Olfr943:NM_146326:exon3:c.A121G:p.T41A	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.21E-08	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39218204	12A2p6	cell line	sgMsh2	39218204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	270	0	0	NA	exonic	Olfr944	synonymous SNV	Olfr944:NM_146507:exon1:c.A846G:p.V282V	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	3.68E-08	TAC	synonymous	NA	NA	NA	NA
M7_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	348	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	1.46E-09	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39426542	12A2p6	cell line	sgMsh2	39426542	G	T	SNV	Mutect2;MuSe;Vardict	3	0.135	123	0	0	NA	exonic	Olfr952	nonsynonymous SNV	Olfr952:NM_146503:exon1:c.C528A:p.H176Q	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.630801013	2	0.9938383	AGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39484543	12A2p6	cell line	sgMsh2	39484543	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	359	0	0	NA	exonic	Olfr44	nonsynonymous SNV	Olfr44:NM_146830:exon2:c.A709T:p.R237W	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.25E-09	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39596639	12A2p6	cell line	sgMsh2	39596639	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	202	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon11:c.T1200C:p.T400T,AW551984:NM_001359951:exon11:c.T1200C:p.T400T,AW551984:NM_178737:exon11:c.T1200C:p.T400T"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999984	AAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	39719434	12A2p6	cell line	sgMsh2	39719434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	421	0	0	NA	exonic	Olfr965	nonsynonymous SNV	Olfr965:NM_001011859:exon1:c.T206C:p.I69T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.01E-09	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39737754	12A2p6	cell line	sgMsh2	39737754	A	-	Deletion	Strelka2;Vardict	2	0.2059	34	0	0	NA	exonic	Olfr150	stoploss	Olfr150:NM_146609:exon1:c.938delA:p.*313del	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.962088359	NA	NA	TAA	nonsynonymous	A	10	AAAAAAAAAA	-1
M7_p20	chr9	39750389	12A2p6	cell line	sgMsh2	39750389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	114	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.T2C:p.M1T	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997797	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39772552	12A2p6	cell line	sgMsh2	39772552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	681	0	0	NA	exonic	Olfr968	nonsynonymous SNV	Olfr968:NM_146612:exon1:c.G247A:p.V83M	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	39772775	12A2p6	cell line	sgMsh2	39772775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	128	0	0	NA	exonic	Olfr968	synonymous SNV	Olfr968:NM_146612:exon1:c.A24G:p.G8G	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.943865219	1	0.9990771	CTC	synonymous	NA	NA	NA	NA
M7_p20	chr9	39795557	12A2p6	cell line	sgMsh2	39795557	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	401	0	0	NA	exonic	Olfr969	frameshift deletion	Olfr969:NM_146826:exon1:c.181delT:p.L63Sfs*20	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M7_p20	chr9	39873441	12A2p6	cell line	sgMsh2	39873441	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	467	0	0	NA	exonic	Olfr972	synonymous SNV	Olfr972:NM_146610:exon1:c.A165T:p.L55L	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.00E-09	TAC	synonymous	AC	8	ACACACAC	NA
M7_p20	chr9	39873961	12A2p6	cell line	sgMsh2	39873961	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	344	0	0	NA	exonic	Olfr972	frameshift deletion	Olfr972:NM_146610:exon1:c.685delA:p.K229Nfs*56	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	40978194	12A2p6	cell line	sgMsh2	40978194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	exonic	Crtam	nonsynonymous SNV	"Crtam:NM_001281954:exon8:c.T884C:p.L295P,Crtam:NM_019465:exon8:c.T881C:p.L294P"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999737	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	42566354	12A2p6	cell line	sgMsh2	42566354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	239	0	0	NA	exonic	Grik4	nonsynonymous SNV	Grik4:NM_175481:exon14:c.A1535G:p.D512G	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.462587409	2	0.9958998	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	154	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.761633815	2	0.6604189	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	44106252	12A2p6	cell line	sgMsh2	44106252	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	136	0	0	NA	exonic	Mfrp	nonsynonymous SNV	"Mfrp:NM_001190314:exon13:c.A1522G:p.S508G,Mfrp:NM_147126:exon13:c.A1540G:p.S514G"	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9989972	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	44158586	12A2p6	cell line	sgMsh2	44158586	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	170	0	0	NA	exonic	Cbl	synonymous SNV	Cbl:NM_007619:exon11:c.A1863G:p.S621S	9qA5.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.252320405	3	1.08E-08	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	44250827	12A2p6	cell line	sgMsh2	44250827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	97	0	0	NA	exonic	Pdzd3	nonsynonymous SNV	Pdzd3:NM_133226:exon3:c.T74C:p.I25T	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9994302	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	44263821	12A2p6	cell line	sgMsh2	44263821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	37	0	0	NA	exonic	Nlrx1	synonymous SNV	"Nlrx1:NM_001163742:exon5:c.T657C:p.R219R,Nlrx1:NM_001163743:exon5:c.T657C:p.R219R,Nlrx1:NM_178420:exon5:c.T657C:p.R219R"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9839242	AAC	synonymous	NA	NA	NA	NA
M7_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	34	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	44823338	12A2p6	cell line	sgMsh2	44823338	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	309	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon25:c.A6206G:p.Y2069C	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	5.05E-09	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45093823	12A2p6	cell line	sgMsh2	45093823	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	186	0	0	NA	exonic	Jaml	nonsynonymous SNV	Jaml:NM_001005421:exon6:c.T512C:p.V171A	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999961	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45183178	12A2p6	cell line	sgMsh2	45183178	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	134	0	0	NA	exonic	Tmprss4	nonsynonymous SNV	"Tmprss4:NM_001364528:exon5:c.G14T:p.S5I,Tmprss4:NM_145403:exon5:c.G434T:p.S145I"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9958504	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45668250	12A2p6	cell line	sgMsh2	45668250	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	35	0	0	NA	exonic	Dscaml1	nonsynonymous SNV	Dscaml1:NM_001081270:exon5:c.G920T:p.G307V	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9820559	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45770728	12A2p6	cell line	sgMsh2	45770728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	152	0	0	NA	exonic	Cep164	nonsynonymous SNV	Cep164:NM_001081373:exon27:c.T3673C:p.F1225L	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.925174818	1	0.9991224	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45916032	12A2p6	cell line	sgMsh2	45916032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	102	0	0	NA	exonic	Pcsk7	nonsynonymous SNV	"Pcsk7:NM_001281934:exon9:c.T1096C:p.C366R,Pcsk7:NM_008794:exon9:c.T1096C:p.C366R"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.752288615	2	0.511008	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45944380	12A2p6	cell line	sgMsh2	45944380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	68	0	0	NA	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_172257:exon17:c.A1600G:p.N534D,Sidt2:NM_001289668:exon18:c.A1663G:p.N555D,Sidt2:NM_001359653:exon18:c.A1612G:p.N538D"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9971223	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	45946813	12A2p6	cell line	sgMsh2	45946813	T	-	Deletion	Mutect2;Vardict	2	0.172	63	0	0	NA	exonic	Sidt2	frameshift deletion	"Sidt2:NM_001289668:exon12:c.1091delA:p.N364Mfs*59,Sidt2:NM_172257:exon12:c.1091delA:p.N364Mfs*38,Sidt2:NM_001359653:exon13:c.1103delA:p.N368Mfs*38"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.803687216	NA	NA	ATT	frameshift	NA	NA	NA	-1
M7_p20	chr9	45947872	12A2p6	cell line	sgMsh2	45947872	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	73	0	0	NA	exonic	Sidt2	nonsynonymous SNV	"Sidt2:NM_001289668:exon10:c.T979A:p.L327M,Sidt2:NM_001359653:exon10:c.T979A:p.L327M,Sidt2:NM_172257:exon10:c.T979A:p.L327M"	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9978227	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	46283050	12A2p6	cell line	sgMsh2	46283050	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	34	0	0	NA	exonic	Bud13	nonsynonymous SNV	Bud13:NM_146000:exon1:c.T20G:p.L7R	9qA5.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9810433	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	48959265	12A2p6	cell line	sgMsh2	48959265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	61	0	0	NA	exonic	Htr3b	nonsynonymous SNV	Htr3b:NM_020274:exon2:c.T137C:p.V46A	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9957493	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	49037852	12A2p6	cell line	sgMsh2	49037852	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	134	0	0	NA	exonic	Usp28	nonsynonymous SNV	"Usp28:NM_175482:exon22:c.G2745T:p.K915N,Usp28:NM_001359739:exon23:c.G2841T:p.K947N"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.999928	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	49268648	12A2p6	cell line	sgMsh2	49268648	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	168	0	0	NA	exonic	Gm4894	nonsynonymous SNV	Gm4894:NM_177701:exon2:c.A77T:p.E26V	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999892	GAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	50740565	12A2p6	cell line	sgMsh2	50740565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	189	0	0	NA	exonic	2310030G06Rik	nonsynonymous SNV	2310030G06Rik:NM_025865:exon4:c.A320G:p.Y107C	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999967	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	50862464	12A2p6	cell line	sgMsh2	50862464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	161	0	0	NA	exonic	Ppp2r1b	nonsynonymous SNV	"Ppp2r1b:NM_001034085:exon5:c.T638C:p.V213A,Ppp2r1b:NM_001286553:exon5:c.T638C:p.V213A,Ppp2r1b:NM_028614:exon5:c.T638C:p.V213A"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999841	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	52085321	12A2p6	cell line	sgMsh2	52085321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	129	0	0	NA	exonic	Rdx	synonymous SNV	"Rdx:NM_001104616:exon13:c.T1563C:p.N521N,Rdx:NM_009041:exon13:c.T1563C:p.N521N"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999048	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	53375371	12A2p6	cell line	sgMsh2	53375371	A	-	Deletion	Mutect2;Vardict	2	0.229	111	0	0	NA	exonic	Exph5	frameshift deletion	Exph5:NM_176846:exon6:c.3751delA:p.K1252Nfs*29	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr9	53425655	12A2p6	cell line	sgMsh2	53425655	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	228	0	0	NA	exonic	4930550C14Rik	synonymous SNV	"4930550C14Rik:NM_001376945:exon5:c.T258C:p.D86D,4930550C14Rik:NM_001376943:exon7:c.T693C:p.D231D,4930550C14Rik:NM_001376944:exon7:c.T693C:p.D231D,4930550C14Rik:NM_029247:exon7:c.T693C:p.D231D"	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	53500806	12A2p6	cell line	sgMsh2	53500806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	224	0	0	NA	exonic	Atm	synonymous SNV	Atm:NM_007499:exon20:c.A2949G:p.R983R	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999995	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr9	53563665	12A2p6	cell line	sgMsh2	53563665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	164	0	0	NA	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon13:c.A2756G:p.N919S	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999829	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	53570988	12A2p6	cell line	sgMsh2	53570988	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	100	0	0	NA	exonic	Npat	nonsynonymous SNV	Npat:NM_001081152:exon17:c.T3995G:p.L1332R	9qA5.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995182	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	54922287	12A2p6	cell line	sgMsh2	54922287	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	96	0	0	NA	exonic	Hykk	synonymous SNV	Hykk:NM_177351:exon3:c.T439C:p.L147L	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993975	ATT	synonymous	NA	NA	NA	NA
M7_p20	chr9	56147420	12A2p6	cell line	sgMsh2	56147420	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	112	0	0	NA	exonic	Tspan3	synonymous SNV	Tspan3:NM_019793:exon2:c.T222A:p.A74A	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9997531	TAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	762	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.154195803	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	217	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999993	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M7_p20	chr9	56489931	12A2p6	cell line	sgMsh2	56489931	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	156	0	0	NA	exonic	Hmg20a	synonymous SNV	Hmg20a:NM_025812:exon9:c.A1014C:p.R338R	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.999979	GAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	56886067	12A2p6	cell line	sgMsh2	56886067	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	42	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.A1085T:p.N362I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9877878	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	56982712	12A2p6	cell line	sgMsh2	56982712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	72	0	0	NA	exonic	Snupn	synonymous SNV	Snupn:NM_178374:exon9:c.T816C:p.S272S	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9976978	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr9	57096822	12A2p6	cell line	sgMsh2	57096822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	121	0	0	NA	exonic	Sin3a	nonsynonymous SNV	"Sin3a:NM_001110350:exon6:c.T857C:p.V286A,Sin3a:NM_001357754:exon6:c.T857C:p.V286A,Sin3a:NM_001110351:exon7:c.T857C:p.V286A,Sin3a:NM_011378:exon7:c.T857C:p.V286A"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998511	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	57612601	12A2p6	cell line	sgMsh2	57612601	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	159	0	0	NA	exonic	Lman1l	nonsynonymous SNV	Lman1l:NM_199222:exon7:c.C752T:p.T251I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999822	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	57629290	12A2p6	cell line	sgMsh2	57629290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	55	0	0	NA	exonic	Csk	nonsynonymous SNV	"Csk:NM_007783:exon6:c.A526G:p.T176A,Csk:NM_001304761:exon8:c.A526G:p.T176A"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.7883348	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	58150162	12A2p6	cell line	sgMsh2	58150162	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	103	0	0	NA	exonic	Stra6	nonsynonymous SNV	"Stra6:NM_001162475:exon14:c.A1254G:p.I418M,Stra6:NM_001162476:exon14:c.A1254G:p.I418M,Stra6:NM_001162479:exon14:c.A1254G:p.I418M,Stra6:NM_009291:exon14:c.A1254G:p.I418M"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9995926	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	58255017	12A2p6	cell line	sgMsh2	58255017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	54	0	0	NA	exonic	Stoml1	nonsynonymous SNV	Stoml1:NM_026942:exon2:c.A217G:p.I73V	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9937253	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	58908457	12A2p6	cell line	sgMsh2	58908457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	179	0	0	NA	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon16:c.A2534G:p.N845S,Neo1:NM_008684:exon16:c.A2534G:p.N845S"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99526382	1	0.9999925	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	58921767	12A2p6	cell line	sgMsh2	58921767	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	187	0	0	NA	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon10:c.G1848T:p.Q616H,Neo1:NM_008684:exon10:c.G1848T:p.Q616H"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999963	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	58985809	12A2p6	cell line	sgMsh2	58985809	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	72	0	0	NA	exonic	Neo1	nonsynonymous SNV	"Neo1:NM_001042752:exon3:c.T549A:p.N183K,Neo1:NM_008684:exon3:c.T549A:p.N183K"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.953210419	1	0.9935196	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	59539836	12A2p6	cell line	sgMsh2	59539836	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	63	0	0	NA	exonic	Hexa	nonsynonymous SNV	Hexa:NM_010421:exon1:c.C113T:p.T38I	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9961974	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	177	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.710235214	2	0.979688	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	59821679	12A2p6	cell line	sgMsh2	59821679	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	285	0	0	NA	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon12:c.T1817G:p.L606R	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.65E-08	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	59868201	12A2p6	cell line	sgMsh2	59868201	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	264	0	0	NA	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon23:c.A3094G:p.R1032G	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	5.11E-08	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	62282046	12A2p6	cell line	sgMsh2	62282046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	202	0	0	NA	exonic	Spesp1	nonsynonymous SNV	Spesp1:NM_025721:exon1:c.T17C:p.L6P	9qB	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999984	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	64212673	12A2p6	cell line	sgMsh2	64212673	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	67	0	0	NA	exonic	Map2k1	nonsynonymous SNV	Map2k1:NM_008927:exon3:c.G349T:p.V117L	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9969573	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	64660479	12A2p6	cell line	sgMsh2	64660479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	65	0	0	NA	exonic	Megf11	nonsynonymous SNV	"Megf11:NM_172522:exon9:c.A1156G:p.I386V,Megf11:NM_001134399:exon10:c.A1249G:p.I417V"	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	64716861	12A2p6	cell line	sgMsh2	64716861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	159	0	0	NA	exonic	Rab11a	synonymous SNV	Rab11a:NM_017382:exon5:c.T639C:p.C213C	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.817705016	1	0.880453	GAC	synonymous	NA	NA	NA	NA
M7_p20	chr9	65358704	12A2p6	cell line	sgMsh2	65358704	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	125	0	0	NA	exonic	Pdcd7	nonsynonymous SNV	Pdcd7:NM_016688:exon5:c.T1442C:p.I481T	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998809	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	65703433	12A2p6	cell line	sgMsh2	65703433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	25	0	0	NA	exonic	Zfp609	synonymous SNV	Zfp609:NM_172536:exon5:c.A2247G:p.V749V	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.981246019	1	0.964377	ATA	synonymous	NA	NA	NA	NA
M7_p20	chr9	66372540	12A2p6	cell line	sgMsh2	66372540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	176	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon2:c.T729C:p.G243G	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999931	GTC	synonymous	NA	NA	NA	NA
M7_p20	chr9	66445540	12A2p6	cell line	sgMsh2	66445540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	241	0	0	NA	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon35:c.A6307G:p.T2103A	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	67346506	12A2p6	cell line	sgMsh2	67346506	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.232	13	0	0	NA	exonic	Tln2	nonsynonymous SNV	Tln2:NM_001081242:exon20:c.C2282T:p.T761I	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9410259	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	67395486	12A2p6	cell line	sgMsh2	67395486	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	228	0	0	NA	exonic	Tln2	nonsynonymous SNV	Tln2:NM_001081242:exon4:c.C202T:p.R68W	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9948407	CGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	41	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9871049	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	69467368	12A2p6	cell line	sgMsh2	69467368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	314	0	0	NA	exonic	Anxa2	synonymous SNV	Anxa2:NM_007585:exon3:c.T126C:p.I42I	9qC	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.939192619	1	0.9999989	TTG	synonymous	NA	NA	NA	NA
M7_p20	chr9	70124959	12A2p6	cell line	sgMsh2	70124959	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	207	0	0	NA	exonic	Fam81a	nonsynonymous SNV	Fam81a:NM_029784:exon3:c.A250G:p.T84A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999988	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	96	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9993975	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr9	70408012	12A2p6	cell line	sgMsh2	70408012	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	72	0	0	NA	exonic	Ccnb2	synonymous SNV	Ccnb2:NM_007630:exon9:c.T1104C:p.Y368Y	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9976978	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	70419008	12A2p6	cell line	sgMsh2	70419008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	219	0	0	NA	exonic	Ccnb2	nonsynonymous SNV	Ccnb2:NM_007630:exon2:c.T146C:p.V49A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	70626787	12A2p6	cell line	sgMsh2	70626787	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	221	0	0	NA	exonic	Mindy2	nonsynonymous SNV	"Mindy2:NM_001374686:exon5:c.A1127C:p.K376T,Mindy2:NM_172772:exon5:c.A1127C:p.K376T"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	71716549	12A2p6	cell line	sgMsh2	71716549	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	78	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon6:c.A1901T:p.Q634L,Cgnl1:NM_026599:exon6:c.A1901T:p.Q634L"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.878448817	1	0.9701932	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	72617209	12A2p6	cell line	sgMsh2	72617209	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	38	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A1680C:p.K560N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	72694422	12A2p6	cell line	sgMsh2	72694422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	81	0	0	NA	exonic	Nedd4	synonymous SNV	Nedd4:NM_001357998:exon1:c.T984C:p.C328C	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.915829618	1	0.9887043	GTG	synonymous	TG	8	TGTGTGTG	NA
M7_p20	chr9	73012712	12A2p6	cell line	sgMsh2	73012712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	47	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286544:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286545:exon8:c.A1608C:p.K536N,Ccpg1:NM_001286546:exon8:c.A1308C:p.K436N,Ccpg1:NM_028181:exon8:c.A1608C:p.K536N,Ccpg1:NM_001359295:exon9:c.A1704C:p.K568N,Ccpg1:NM_001359296:exon9:c.A1704C:p.K568N"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9907467	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	73017490	12A2p6	cell line	sgMsh2	73017490	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	194	0	0	NA	exonic	Pigb	synonymous SNV	Pigb:NM_018889:exon11:c.A1386T:p.A462A	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999975	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr9	73525993	12A2p6	cell line	sgMsh2	73525993	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	159	0	0	NA	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon28:c.A5905C:p.R1969R	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999822	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	73665558	12A2p6	cell line	sgMsh2	73665558	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	247	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon16:c.T4681C:p.Y1561H	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.308391606	3	9.10E-09	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	73694917	12A2p6	cell line	sgMsh2	73694917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon11:c.A4046G:p.E1349G	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998239	TTC	nonsynonymous	CTTCT	11	CTTCTCTTCTC	NA
M7_p20	chr9	73931436	12A2p6	cell line	sgMsh2	73931436	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	266	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon2:c.C2132A:p.T711N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	4.58E-08	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	73931834	12A2p6	cell line	sgMsh2	73931834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	65	0	0	NA	exonic	Unc13c	synonymous SNV	Unc13c:NM_001081153:exon2:c.T1734C:p.L578L	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.663509213	2	0.7438559	AAA	synonymous	NA	NA	NA	NA
M7_p20	chr9	74154934	12A2p6	cell line	sgMsh2	74154934	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	166	0	0	NA	exonic	Wdr72	nonsynonymous SNV	Wdr72:NM_001033500:exon12:c.C1397T:p.T466I	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9952462	ACC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	75006449	12A2p6	cell line	sgMsh2	75006449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	170	0	0	NA	exonic	Fam214a	synonymous SNV	"Fam214a:NM_153584:exon3:c.A384G:p.A128A,Fam214a:NM_001113283:exon4:c.A363G:p.A121A,Fam214a:NM_001359816:exon4:c.A363G:p.A121A"	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999904	CAC	synonymous	NA	NA	NA	NA
M7_p20	chr9	75197715	12A2p6	cell line	sgMsh2	75197715	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	109	0	0	NA	exonic	Myo5a	stopgain	Myo5a:NM_010864:exon33:c.A4306T:p.K1436X	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997087	CAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr9	75197720	12A2p6	cell line	sgMsh2	75197720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	107	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon33:c.A4311T:p.K1437N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	AAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr9	76493030	12A2p6	cell line	sgMsh2	76493030	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	162	0	0	NA	exonic	Fam83b	nonsynonymous SNV	Fam83b:NM_001045518:exon5:c.C790A:p.H264N	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.999985	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	76952029	12A2p6	cell line	sgMsh2	76952029	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	124	0	0	NA	exonic	Tinag	frameshift deletion	Tinag:NM_012033:exon11:c.1296delT:p.I432Mfs*21	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	77032432	12A2p6	cell line	sgMsh2	77032432	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	199	0	0	NA	exonic	Tinag	nonsynonymous SNV	Tinag:NM_012033:exon2:c.A410G:p.N137S	9qD	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.5655537	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	77961012	12A2p6	cell line	sgMsh2	77961012	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.247	105	0	0	NA	exonic	Elovl5	frameshift deletion	Elovl5:NM_134255:exon3:c.205delA:p.N69Tfs*15	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	78059630	12A2p6	cell line	sgMsh2	78059630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	137	0	0	NA	exonic	Gcm1	nonsynonymous SNV	Gcm1:NM_008103:exon3:c.A130G:p.I44V	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.911157018	1	0.9974072	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	78098394	12A2p6	cell line	sgMsh2	78098394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	228	0	0	NA	exonic	Fbxo9	nonsynonymous SNV	"Fbxo9:NM_001081490:exon5:c.A359G:p.K120R,Fbxo9:NM_023605:exon5:c.A356G:p.K119R"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999996	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	78470640	12A2p6	cell line	sgMsh2	78470640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	279	0	0	NA	exonic	Mto1	nonsynonymous SNV	Mto1:NM_026658:exon11:c.A1763C:p.E588A	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.327082006	3	1.76E-08	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	165	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999873	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Mutect2;Vardict	2	0.325	92	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
M7_p20	chr9	82025664	12A2p6	cell line	sgMsh2	82025664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	243	0	0	NA	exonic	Mei4	nonsynonymous SNV	"Mei4:NM_001357479:exon4:c.A749G:p.K250R,Mei4:NM_175213:exon5:c.A1046G:p.K349R"	9qE1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.25	12	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M7_p20	chr9	86559478	12A2p6	cell line	sgMsh2	86559478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	142	0	0	NA	exonic	Pgm3	synonymous SNV	"Pgm3:NM_001163746:exon9:c.T1065C:p.H355H,Pgm3:NM_028352:exon9:c.T1065C:p.H355H"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.999954	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	87707833	12A2p6	cell line	sgMsh2	87707833	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	114	0	0	NA	exonic	Tbx18	nonsynonymous SNV	Tbx18:NM_023814:exon7:c.T1051A:p.Y351N	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.644818813	2	0.9831885	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	88462325	12A2p6	cell line	sgMsh2	88462325	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	159	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon8:c.T775G:p.S259A,Syncrip:NM_001284328:exon9:c.T1069G:p.S357A,Syncrip:NM_019666:exon9:c.T1069G:p.S357A,Syncrip:NM_019796:exon9:c.T1069G:p.S357A"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999822	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	88462956	12A2p6	cell line	sgMsh2	88462956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	128	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon7:c.A713C:p.K238T,Syncrip:NM_001284328:exon8:c.A1007C:p.K336T,Syncrip:NM_019666:exon8:c.A1007C:p.K336T,Syncrip:NM_019796:exon8:c.A1007C:p.K336T"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	88480612	12A2p6	cell line	sgMsh2	88480612	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	107	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001284328:exon2:c.G142A:p.V48I,Syncrip:NM_019666:exon2:c.G142A:p.V48I,Syncrip:NM_019796:exon2:c.G142A:p.V48I"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9996742	ACG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	88582205	12A2p6	cell line	sgMsh2	88582205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	176	0	0	NA	exonic	Trim43a	synonymous SNV	"Trim43a:NM_001034906:exon2:c.T168C:p.C56C,Trim43a:NM_001357687:exon2:c.T168C:p.C56C"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999931	GTA	synonymous	NA	NA	NA	NA
M7_p20	chr9	89602722	12A2p6	cell line	sgMsh2	89602722	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	148	0	0	NA	exonic	Minar1	synonymous SNV	Minar1:NM_153509:exon2:c.G621A:p.Q207Q	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999671	GCT	synonymous	NA	NA	NA	NA
M7_p20	chr9	90093785	12A2p6	cell line	sgMsh2	90093785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	246	0	0	NA	exonic	Morf4l1	nonsynonymous SNV	"Morf4l1:NM_024431:exon11:c.T836C:p.L279P,Morf4l1:NM_001039147:exon12:c.T953C:p.L318P,Morf4l1:NM_001357780:exon12:c.T950C:p.L317P"	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	90223478	12A2p6	cell line	sgMsh2	90223478	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.376	124	0	0	NA	exonic	Tbc1d2b	synonymous SNV	Tbc1d2b:NM_194334:exon7:c.A1548T:p.R516R	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998741	TTC	synonymous	NA	NA	NA	NA
M7_p20	chr9	90228941	12A2p6	cell line	sgMsh2	90228941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	67	0	0	NA	exonic	Tbc1d2b	nonsynonymous SNV	Tbc1d2b:NM_194334:exon4:c.A844G:p.K282E	9qE3.1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9969573	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	91364112	12A2p6	cell line	sgMsh2	91364112	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.279	140	0	0	NA	exonic	Zic1	frameshift deletion	"Zic1:NM_009573:exon1:c.906delT:p.C304Afs*77,Zic1:NM_001376941:exon2:c.906delT:p.C304Afs*77"	9qE3.2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	95461431	12A2p6	cell line	sgMsh2	95461432	TA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.365	68	0	0	NA	exonic	U2surp	frameshift deletion	"U2surp:NM_001357977:exon26:c.1836_1837del:p.H612Qfs*27,U2surp:NM_001357975:exon27:c.2928_2929del:p.H976Qfs*27,U2surp:NM_001357976:exon27:c.1836_1837del:p.H612Qfs*27,U2surp:NM_026476:exon27:c.2931_2932del:p.H977Qfs*27,U2surp:NM_001114977:exon28:c.3063_3064del:p.H1021Qfs*27,U2surp:NM_001357974:exon28:c.3060_3061del:p.H1020Qfs*27"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	NA	NA	TTA	frameshift	T	5	TTTTT	-2
M7_p20	chr9	95865695	12A2p6	cell line	sgMsh2	95865695	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	251	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon4:c.T1029G:p.D343E	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	95945351	12A2p6	cell line	sgMsh2	95945351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	212	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7348G:p.S2450G	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999991	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	95945356	12A2p6	cell line	sgMsh2	95945356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	219	0	0	NA	exonic	Atr	nonsynonymous SNV	Atr:NM_019864:exon44:c.A7353C:p.R2451S	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999994	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	96177537	12A2p6	cell line	sgMsh2	96177537	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	127	0	0	NA	exonic	Gk5	nonsynonymous SNV	"Gk5:NM_001368879:exon15:c.G1441A:p.A481T,Gk5:NM_177352:exon15:c.G1441A:p.A481T"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.887794018	1	0.9914396	GGC	nonsynonymous	CTGG	9	CTGGCTGGC	NA
M7_p20	chr9	96995814	12A2p6	cell line	sgMsh2	96995814	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.166	26	0	0	NA	exonic	Spsb4	nonsynonymous SNV	Spsb4:NM_145134:exon2:c.A455G:p.D152G	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.775651615	1	0.845411	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	97570592	12A2p6	cell line	sgMsh2	97570592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	110	0	0	NA	exonic	Clstn2	nonsynonymous SNV	Clstn2:NM_022319:exon5:c.A761G:p.D254G	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9997245	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	99583360	12A2p6	cell line	sgMsh2	99583360	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	83	0	0	NA	exonic	Dbr1	nonsynonymous SNV	"Dbr1:NM_001368298:exon7:c.A909C:p.K303N,Dbr1:NM_031403:exon8:c.A990C:p.K330N"	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.901811818	1	0.9848282	AAT	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr9	99875028	12A2p6	cell line	sgMsh2	99875028	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	98	0	0	NA	exonic	Sox14	synonymous SNV	Sox14:NM_011440:exon1:c.C657T:p.I219I	9qE3.3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.9980781	GGA	synonymous	NA	NA	NA	NA
M7_p20	chr9	101101410	12A2p6	cell line	sgMsh2	101101410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	128	0	0	NA	exonic	Msl2	nonsynonymous SNV	"Msl2:NM_001100451:exon2:c.T982C:p.C328R,Msl2:NM_001379344:exon3:c.T760C:p.C254R"	9qE4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998993	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	102723707	12A2p6	cell line	sgMsh2	102723707	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.38	28	0	0	NA	exonic	Amotl2	synonymous SNV	Amotl2:NM_019764:exon3:c.A873T:p.A291A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9736839	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	102730061	12A2p6	cell line	sgMsh2	102730061	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	24	0	0	NA	exonic	Amotl2	nonsynonymous SNV	Amotl2:NM_019764:exon8:c.G1968T:p.Q656H	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9673015	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	103343982	12A2p6	cell line	sgMsh2	103343982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	73	0	0	NA	exonic	Topbp1	nonsynonymous SNV	Topbp1:NM_176979:exon23:c.T3805C:p.S1269P	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9978227	GTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	104004794	12A2p6	cell line	sgMsh2	104004794	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	98	0	0	NA	exonic	Nphp3	synonymous SNV	"Nphp3:NM_028721:exon2:c.G462A:p.A154A,Nphp3:NM_172460:exon2:c.G462A:p.A154A"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9994612	CGG	synonymous	NA	NA	NA	NA
M7_p20	chr9	104198723	12A2p6	cell line	sgMsh2	104198723	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	158	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon27:c.T2886C:p.I962I,Dnajc13:NM_001359740:exon28:c.T2901C:p.I967I"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999812	CAA	synonymous	NA	NA	NA	NA
M7_p20	chr9	104218563	12A2p6	cell line	sgMsh2	104218563	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	126	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon15:c.A1677G:p.V559V,Dnajc13:NM_001359740:exon15:c.A1677G:p.V559V"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9998874	CTA	synonymous	NA	NA	NA	NA
M7_p20	chr9	104233596	12A2p6	cell line	sgMsh2	104233596	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	204	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon6:c.T475C:p.F159L,Dnajc13:NM_001359740:exon6:c.T475C:p.F159L"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.873776217	1	0.995975	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	104686510	12A2p6	cell line	sgMsh2	104686510	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	83	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon2:c.C139T:p.R47C,Cpne4:NM_001378996:exon2:c.C109T:p.R37C,Cpne4:NM_028719:exon2:c.C85T:p.R29C"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9987542	GCG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	105022375	12A2p6	cell line	sgMsh2	105022375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	209	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon14:c.A1310G:p.K437R,Cpne4:NM_001378996:exon14:c.A1280G:p.K427R,Cpne4:NM_028719:exon14:c.A1256G:p.K419R"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	105418083	12A2p6	cell line	sgMsh2	105418083	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	238	0	0	NA	exonic	Atp2c1	frameshift deletion	"Atp2c1:NM_001253831:exon25:c.2553delT:p.F851Lfs*6,Atp2c1:NM_001359823:exon25:c.2403delT:p.F801Lfs*6,Atp2c1:NM_001253834:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_175025:exon26:c.2451delT:p.F817Lfs*6,Atp2c1:NM_001359822:exon27:c.2463delT:p.F821Lfs*6"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M7_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	146	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.920502218	1	0.9986815	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	106236640	12A2p6	cell line	sgMsh2	106236640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	45	0	0	NA	exonic	Alas1	nonsynonymous SNV	"Alas1:NM_001291835:exon9:c.T1405C:p.Y469H,Alas1:NM_020559:exon9:c.T1405C:p.Y469H"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9896629	TAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	106844234	12A2p6	cell line	sgMsh2	106844234	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	255	0	0	NA	exonic	Dcaf1	synonymous SNV	"Dcaf1:NM_001015507:exon9:c.T1224A:p.A408A,Dcaf1:NM_001373930:exon9:c.T1224A:p.A408A"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M7_p20	chr9	106846756	12A2p6	cell line	sgMsh2	106846756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	201	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon9:c.T1223C:p.M408T,Dcaf1:NM_001015507:exon10:c.T1382C:p.M461T,Dcaf1:NM_001373930:exon10:c.T1382C:p.M461T"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999983	ATG	nonsynonymous	T	5	TTTTT	NA
M7_p20	chr9	106978609	12A2p6	cell line	sgMsh2	106978609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	160	0	0	NA	exonic	Dock3	nonsynonymous SNV	Dock3:NM_153413:exon23:c.A2350G:p.T784A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999832	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	107745165	12A2p6	cell line	sgMsh2	107745165	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	85	0	0	NA	exonic	Rbm5	synonymous SNV	"Rbm5:NM_001359524:exon19:c.A1686G:p.Q562Q,Rbm5:NM_001359525:exon19:c.A1689G:p.Q563Q,Rbm5:NM_001359526:exon19:c.A1689G:p.Q563Q,Rbm5:NM_148930:exon19:c.A1689G:p.Q563Q"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.934520019	1	0.9938299	GTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	107767599	12A2p6	cell line	sgMsh2	107767599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	148	0	0	NA	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon3:c.A127C:p.S43R,Rbm5:NM_001359525:exon3:c.A127C:p.S43R,Rbm5:NM_001359526:exon3:c.A127C:p.S43R,Rbm5:NM_148930:exon3:c.A127C:p.S43R"	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999671	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	107929742	12A2p6	cell line	sgMsh2	107929742	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	66	0	0	NA	exonic	Actl11	nonsynonymous SNV	Actl11:NM_026338:exon1:c.G1263T:p.Q421H	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9967828	AGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108083085	12A2p6	cell line	sgMsh2	108083085	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	171	0	0	NA	exonic	Mst1	nonsynonymous SNV	Mst1:NM_008243:exon10:c.G1189T:p.G397C	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.976573419	1	0.9999687	GGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108110311	12A2p6	cell line	sgMsh2	108110311	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.143	27	0	0	NA	exonic	Bsn	synonymous SNV	Bsn:NM_007567:exon5:c.T8241C:p.T2747T	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.668181813	1	0.6872539	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	108113082	12A2p6	cell line	sgMsh2	108113082	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	41	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon5:c.A5470G:p.T1824A	9qF1	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9871049	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108484042	12A2p6	cell line	sgMsh2	108484042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	112	0	0	NA	exonic	Lamb2	nonsynonymous SNV	Lamb2:NM_008483:exon15:c.A1772G:p.N591S	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.728925614	2	0.7419148	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.188	79	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.878448817	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M7_p20	chr9	108534008	12A2p6	cell line	sgMsh2	108534008	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.131	58	0	0	NA	exonic	Qrich1	nonsynonymous SNV	"Qrich1:NM_175143:exon3:c.A731G:p.Q244R,Qrich1:NM_001114119:exon4:c.A731G:p.Q244R"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.612110612	2	0.8387288	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108563479	12A2p6	cell line	sgMsh2	108563479	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	246	0	0	NA	exonic	Impdh2	nonsynonymous SNV	"Impdh2:NM_001378921:exon8:c.A878G:p.K293R,Impdh2:NM_011830:exon8:c.A878G:p.K293R"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999999	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	108968614	12A2p6	cell line	sgMsh2	108968614	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	130	0	0	NA	exonic	Col7a1	nonsynonymous SNV	Col7a1:NM_007738:exon56:c.G5063C:p.G1688A	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.99991	GGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	109065342	12A2p6	cell line	sgMsh2	109065342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	68	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon8:c.A1516G:p.R506G	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.957883019	1	0.993067	CTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	109605393	12A2p6	cell line	sgMsh2	109605393	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	284	0	0	NA	exonic	Fbxw24	nonsynonymous SNV	Fbxw24:NM_001013776:exon8:c.T1138C:p.Y380H	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	1.74E-08	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	109688739	12A2p6	cell line	sgMsh2	109688739	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	168	0	0	NA	exonic	Fbxw18	nonsynonymous SNV	Fbxw18:NM_001033794:exon8:c.T1178A:p.V393E	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.789669416	1	0.6320971	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	110036791	12A2p6	cell line	sgMsh2	110036791	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	119	0	0	NA	exonic	Map4	synonymous SNV	"Map4:NM_001205330:exon8:c.T1848G:p.P616P,Map4:NM_001205332:exon8:c.T1848G:p.P616P,Map4:NM_008633:exon8:c.T1848G:p.P616P"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9998334	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	227	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.845740617	1	0.9809046	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	110373489	12A2p6	cell line	sgMsh2	110373489	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	65	0	0	NA	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon6:c.A731G:p.H244R,Scap:NM_001103162:exon6:c.A731G:p.H244R"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9965984	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	110511451	12A2p6	cell line	sgMsh2	110511451	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	131	0	0	NA	exonic	Kif9	nonsynonymous SNV	"Kif9:NM_001163569:exon15:c.T1511C:p.F504S,Kif9:NM_010628:exon15:c.T1511C:p.F504S"	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999149	TTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	110550147	12A2p6	cell line	sgMsh2	110550147	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	175	0	0	NA	exonic	Setd2	nonsynonymous SNV	Setd2:NM_001081340:exon3:c.T3029C:p.V1010A	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999927	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	110633693	12A2p6	cell line	sgMsh2	110633693	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	32	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon27:c.A4303C:p.S1435R	9qF2	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	2	1	1	0.9788474	CTC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	111366410	12A2p6	cell line	sgMsh2	111366410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	32	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon11:c.T3501C:p.H1167H	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9788474	ATG	synonymous	NA	NA	NA	NA
M7_p20	chr9	111383122	12A2p6	cell line	sgMsh2	111383122	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	236	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon16:c.T5327G:p.I1776S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	111391303	12A2p6	cell line	sgMsh2	111391303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	55	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon20:c.C7107A:p.S2369S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9940646	CCT	synonymous	NA	NA	NA	NA
M7_p20	chr9	111394320	12A2p6	cell line	sgMsh2	111394320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	175	0	0	NA	exonic	Trank1	nonsynonymous SNV	Trank1:NM_001164659:exon22:c.A8962G:p.R2988G	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.99993642	1	0.9999927	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	113674457	12A2p6	cell line	sgMsh2	113674457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	176	0	0	NA	exonic	Pdcd6ip	synonymous SNV	"Pdcd6ip:NM_001164677:exon10:c.T1242C:p.S414S,Pdcd6ip:NM_001164678:exon10:c.T1227C:p.S409S,Pdcd6ip:NM_011052:exon10:c.T1227C:p.S409S"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.967228219	1	0.9999593	CAG	synonymous	NA	NA	NA	NA
M7_p20	chr9	113908688	12A2p6	cell line	sgMsh2	113908688	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	95	0	0	NA	exonic	Clasp2	synonymous SNV	"Clasp2:NM_029633:exon29:c.T3129C:p.D1043D,Clasp2:NM_001286600:exon31:c.T3183C:p.D1061D"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9993628	ATC	synonymous	NA	NA	NA	NA
M7_p20	chr9	114723292	12A2p6	cell line	sgMsh2	114723292	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	143	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon13:c.A1499C:p.D500A	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999565	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	118065266	12A2p6	cell line	sgMsh2	118065266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	60	0	0	NA	exonic	Cmc1	nonsynonymous SNV	Cmc1:NM_026442:exon4:c.A283G:p.T95A	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.883121418	1	0.9622196	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	119072565	12A2p6	cell line	sgMsh2	119072565	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.263	20	0	0	NA	exonic	Plcd1	frameshift deletion	"Plcd1:NM_001293648:exon12:c.1890delA:p.K630Nfs*4,Plcd1:NM_019676:exon12:c.1812delA:p.K604Nfs*4"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M7_p20	chr9	119208879	12A2p6	cell line	sgMsh2	119208879	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	277	0	0	NA	exonic	Slc22a13	nonsynonymous SNV	Slc22a13:NM_133980:exon1:c.A182G:p.N61S	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	2.52E-08	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	119361126	12A2p6	cell line	sgMsh2	119361126	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	114	0	0	NA	exonic	Xylb	synonymous SNV	Xylb:NM_001033209:exon3:c.T198C:p.G66G	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.813032416	1	0.8636686	GTG	synonymous	NA	NA	NA	NA
M7_p20	chr9	119432565	12A2p6	cell line	sgMsh2	119432565	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.117	48	0	0	NA	exonic	Acvr2b	nonsynonymous SNV	"Acvr2b:NM_007397:exon8:c.T1223C:p.I408T,Acvr2b:NM_001313757:exon9:c.T1151C:p.I384T"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.546694211	2	0.8728086	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	119638553	12A2p6	cell line	sgMsh2	119638553	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	146	0	0	NA	exonic	Scn10a	synonymous SNV	"Scn10a:NM_001205321:exon16:c.C2520T:p.V840V,Scn10a:NM_009134:exon16:c.C2520T:p.V840V"	9qF3	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9999632	CGA	synonymous	GAC	8	GACGACGA	NA
M7_p20	chr9	119954617	12A2p6	cell line	sgMsh2	119954617	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	45	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon14:c.A1764T:p.L588F	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.906484418	1	0.9631598	TAA	nonsynonymous	A	5	AAAAA	NA
M7_p20	chr9	119961924	12A2p6	cell line	sgMsh2	119961924	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	37	0	0	NA	exonic	Ttc21a	nonsynonymous SNV	Ttc21a:NM_028735:exon20:c.A2735G:p.Y912C	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9839242	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	121204805	12A2p6	cell line	sgMsh2	121204805	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.229	17	0	0	NA	exonic	Ulk4	synonymous SNV	Ulk4:NM_177589:exon19:c.A1767G:p.E589E	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9523583	CTT	synonymous	NA	NA	NA	NA
M7_p20	chr9	121208159	12A2p6	cell line	sgMsh2	121208159	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	154	0	0	NA	exonic	Ulk4	stopgain	Ulk4:NM_177589:exon18:c.C1762T:p.Q588X	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.864431017	1	0.9854822	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	121584218	12A2p6	cell line	sgMsh2	121584218	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	57	0	0	NA	exonic	Lyzl4	nonsynonymous SNV	"Lyzl4:NM_001357346:exon3:c.T143C:p.V48A,Lyzl4:NM_001382835:exon3:c.T143C:p.V48A,Lyzl4:NM_026915:exon4:c.T143C:p.V48A"	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9946893	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	121690387	12A2p6	cell line	sgMsh2	121690387	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	38	0	0	NA	exonic	Sec22c	synonymous SNV	"Sec22c:NM_001164562:exon4:c.T375C:p.H125H,Sec22c:NM_178677:exon5:c.T375C:p.H125H"	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	1	1	0.9847852	AAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	121915930	12A2p6	cell line	sgMsh2	121915930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	114	0	0	NA	exonic	Cyp8b1	nonsynonymous SNV	Cyp8b1:NM_010012:exon1:c.A335G:p.Y112C	9qF4	chr9-4330518-121916562	4	2	2	0.9	4.205340083	NA	1	0.897139218	1	0.9918659	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	122253124	12A2p6	cell line	sgMsh2	122253124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	35	0	0	NA	exonic	Ano10	nonsynonymous SNV	"Ano10:NM_001271873:exon10:c.A1306G:p.T436A,Ano10:NM_133979:exon10:c.A1480G:p.T494A"	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.205340083	NA	1	1	1	0.9820559	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chr9	122263740	12A2p6	cell line	sgMsh2	122263740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	101	0	0	NA	exonic	Ano10	synonymous SNV	"Ano10:NM_001271873:exon5:c.T522C:p.H174H,Ano10:NM_133979:exon5:c.T522C:p.H174H"	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.205340083	NA	1	1	1	0.9995444	CAT	synonymous	NA	NA	NA	NA
M7_p20	chr9	123002099	12A2p6	cell line	sgMsh2	123002099	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	81	0	0	NA	exonic	Kif15	frameshift deletion	Kif15:NM_010620:exon24:c.2921delA:p.K975Sfs*13	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chr9	123582251	12A2p6	cell line	sgMsh2	123582251	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.378	111	0	0	NA	exonic	Sacm1l	frameshift deletion	Sacm1l:NM_030692:exon14:c.1104delT:p.L370fs*0	9qF4	chr9-121937817-124127055	3	2	1	0.9	4.205340083	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M7_p20	chrX	7573266	12A2p6	cell line	sgMsh2	7573266	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.375	9	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.T983C:p.M328T,Ppp1r3f:NM_138605:exon1:c.T983C:p.M328T"	XqA1.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	7608995	12A2p6	cell line	sgMsh2	7608995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	51	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon2:c.A235G:p.N79D	XqA1.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	7676186	12A2p6	cell line	sgMsh2	7676186	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	49	0	0	NA	exonic	Magix	nonsynonymous SNV	Magix:NM_018832:exon4:c.G430A:p.G144R	XqA1.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	12604926	12A2p6	cell line	sgMsh2	12604926	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	112	0	0	NA	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon4:c.A363T:p.E121D	XqA1.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	16734152	12A2p6	cell line	sgMsh2	16734152	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	70	0	0	NA	exonic	Maob	synonymous SNV	Maob:NM_172778:exon7:c.G690A:p.K230K	XqA1.2	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M7_p20	chrX	20517466	12A2p6	cell line	sgMsh2	20517466	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	59	0	0	NA	exonic	Jade3	nonsynonymous SNV	"Jade3:NM_199317:exon13:c.T2045G:p.V682G,Jade3:NM_001289684:exon14:c.T1733G:p.V578G"	XqA1.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	20644940	12A2p6	cell line	sgMsh2	20644940	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	39	0	0	NA	exonic	Rbm10	nonsynonymous SNV	"Rbm10:NM_001358905:exon7:c.A317T:p.Q106L,Rbm10:NM_001167776:exon8:c.A569T:p.Q190L,Rbm10:NM_001358904:exon8:c.A569T:p.Q190L,Rbm10:NM_001167775:exon9:c.A800T:p.Q267L,Rbm10:NM_001358903:exon9:c.A800T:p.Q267L,Rbm10:NM_145627:exon9:c.A800T:p.Q267L"	XqA1.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	33701137	12A2p6	cell line	sgMsh2	33701137	T	C	SNV	Mutect2;MuSe;Vardict	3	0.462	209	0	0	NA	exonic	Btbd35f14	nonsynonymous SNV	Btbd35f14:NM_001145038:exon1:c.A1160G:p.D387G	XqA3.2	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	47811248	12A2p6	cell line	sgMsh2	47811248	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	19	0	0	NA	exonic	Smarca1	synonymous SNV	"Smarca1:NM_001290708:exon23:c.T3027C:p.N1009N,Smarca1:NM_001358618:exon23:c.T3012C:p.N1004N,Smarca1:NM_001358619:exon23:c.T3027C:p.N1009N,Smarca1:NM_053123:exon23:c.T3027C:p.N1009N"	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7_p20	chrX	48263593	12A2p6	cell line	sgMsh2	48263593	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	62	0	0	NA	exonic	Utp14a	synonymous SNV	Utp14a:NM_028276:exon6:c.T498C:p.S166S	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7_p20	chrX	48263598	12A2p6	cell line	sgMsh2	48263598	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	61	0	0	NA	exonic	Utp14a	nonsynonymous SNV	Utp14a:NM_028276:exon6:c.T503A:p.F168Y	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48378995	12A2p6	cell line	sgMsh2	48378995	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	56	0	0	NA	exonic	Bcorl1	nonsynonymous SNV	Bcorl1:NM_178782:exon8:c.A3740T:p.Q1247L	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48519719	12A2p6	cell line	sgMsh2	48519719	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	123	0	0	NA	exonic	Rab33a	nonsynonymous SNV	Rab33a:NM_011228:exon1:c.T119G:p.I40S	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48550245	12A2p6	cell line	sgMsh2	48550245	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	79	0	0	NA	exonic	Zfp280c	nonsynonymous SNV	"Zfp280c:NM_001166650:exon14:c.A1663G:p.T555A,Zfp280c:NM_153532:exon14:c.A1663G:p.T555A,Zfp280c:NM_001166648:exon15:c.A1663G:p.T555A,Zfp280c:NM_001166649:exon15:c.A1636G:p.T546A,Zfp280c:NM_001358792:exon16:c.A1594G:p.T532A"	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48872877	12A2p6	cell line	sgMsh2	48872877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	69	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A958G:p.T320A	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48872904	12A2p6	cell line	sgMsh2	48872904	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	59	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon8:c.A931G:p.S311G	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	48875321	12A2p6	cell line	sgMsh2	48875321	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	24	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon5:c.A500G:p.N167S	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	GTTT	8	GTTTGTTT	NA
M7_p20	chrX	49051768	12A2p6	cell line	sgMsh2	49051768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	173	0	0	NA	exonic	Enox2	synonymous SNV	"Enox2:NM_001271448:exon8:c.A978G:p.Q326Q,Enox2:NM_001271447:exon9:c.A978G:p.Q326Q,Enox2:NM_001271449:exon9:c.A978G:p.Q326Q,Enox2:NM_001271450:exon9:c.A978G:p.Q326Q,Enox2:NM_001271451:exon9:c.A978G:p.Q326Q,Enox2:NM_145951:exon9:c.A978G:p.Q326Q"	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
M7_p20	chrX	49885568	12A2p6	cell line	sgMsh2	49885568	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.548	93	0	0	NA	exonic	Olfr1322	frameshift insertion	Olfr1322:NM_001011794:exon1:c.833_834insA:p.A279Cfs*33	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	frameshift	NA	NA	NA	1
M7_p20	chrX	52054518	12A2p6	cell line	sgMsh2	52054518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	29	0	0	NA	exonic	Gpc4	nonsynonymous SNV	Gpc4:NM_008150:exon7:c.T1220C:p.V407A	XqA5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	56661300	12A2p6	cell line	sgMsh2	56661300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	80	0	0	NA	exonic	Slc9a6	nonsynonymous SNV	"Slc9a6:NM_172780:exon16:c.T1961C:p.M654T,Slc9a6:NM_001358861:exon17:c.T1802C:p.M601T"	XqA6	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	57304585	12A2p6	cell line	sgMsh2	57304585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	99	0	0	NA	exonic	Arhgef6	synonymous SNV	Arhgef6:NM_152801:exon3:c.T387C:p.A129A	XqA6	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAG	synonymous	NA	NA	NA	NA
M7_p20	chrX	61185286	12A2p6	cell line	sgMsh2	61185286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	103	0	0	NA	exonic	Cdr1	synonymous SNV	Cdr1:NM_001166658:exon1:c.G273T:p.S91S	XqA6	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M7_p20	chrX	64271890	12A2p6	cell line	sgMsh2	64271890	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.576	142	0	0	NA	exonic	Slitrk4	synonymous SNV	"Slitrk4:NM_001365112:exon2:c.A1170G:p.K390K,Slitrk4:NM_178740:exon3:c.A1170G:p.K390K,Slitrk4:NM_001365111:exon4:c.A1170G:p.K390K"	XqA7.1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7_p20	chrX	73551630	12A2p6	cell line	sgMsh2	73551630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	119	0	0	NA	exonic	Atp2b3	nonsynonymous SNV	"Atp2b3:NM_001310537:exon18:c.T3016C:p.F1006L,Atp2b3:NM_177236:exon18:c.T3016C:p.F1006L"	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	73774456	12A2p6	cell line	sgMsh2	73774456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	51	0	0	NA	exonic	Srpk3	synonymous SNV	Srpk3:NM_019684:exon1:c.T6C:p.S2S	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTG	synonymous	NA	NA	NA	NA
M7_p20	chrX	73862622	12A2p6	cell line	sgMsh2	73862622	C	T	SNV	Mutect2;Vardict	2	0.081	56	0	0	NA	exonic	L1cam	nonsynonymous SNV	"L1cam:NM_001374694:exon9:c.G1043A:p.C348Y,L1cam:NM_008478:exon10:c.G1058A:p.C353Y"	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	73953464	12A2p6	cell line	sgMsh2	73953466	GCA	-	Deletion	Strelka2;Vardict	2	0.4375	32	0	0	NA	exonic	Hcfc1	nonframeshift deletion	Hcfc1:NM_008224:exon10:c.1662_1664del:p.A555del	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GGC	inframe	GCA	17	GCAGCAGCAGCAGCAGC	-3
M7_p20	chrX	74273681	12A2p6	cell line	sgMsh2	74273681	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	49	0	0	NA	exonic	Dnase1l1	nonsynonymous SNV	"Dnase1l1:NM_001370787:exon7:c.T701G:p.I234S,Dnase1l1:NM_001172154:exon8:c.T779G:p.I260S,Dnase1l1:NM_027109:exon8:c.T779G:p.I260S"	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	74411431	12A2p6	cell line	sgMsh2	74411431	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	104	0	0	NA	exonic	G6pdx	nonsynonymous SNV	G6pdx:NM_008062:exon9:c.A878G:p.K293R	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	74640741	12A2p6	cell line	sgMsh2	74640741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	49	0	0	NA	exonic	Gm5640	synonymous SNV	Gm5640:NM_001099302:exon4:c.A738G:p.K246K	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M7_p20	chrX	75287087	12A2p6	cell line	sgMsh2	75287087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.432	54	0	0	NA	exonic	F8	nonsynonymous SNV	"F8:NM_001161373:exon13:c.A3196G:p.N1066D,F8:NM_001161374:exon13:c.A3196G:p.N1066D,F8:NM_007977:exon14:c.A3406G:p.N1136D"	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TTT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	75409563	12A2p6	cell line	sgMsh2	75409563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	16	0	0	NA	exonic	Cmc4	nonsynonymous SNV	"Cmc4:NM_010839:exon2:c.T41C:p.I14T,Cmc4:NM_001294277:exon3:c.T41C:p.I14T"	XqA7.3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	78738575	12A2p6	cell line	sgMsh2	78738575	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	91	0	0	NA	exonic	Fam47c	synonymous SNV	Fam47c:NM_001164739:exon1:c.T762C:p.H254H	XqB	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATT	synonymous	NA	NA	NA	NA
M7_p20	chrX	79505277	12A2p6	cell line	sgMsh2	79505277	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	79	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon8:c.T1203C:p.L401L	XqB	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAA	synonymous	AAGT	8	AAGTAAGT	NA
M7_p20	chrX	81071088	12A2p6	cell line	sgMsh2	81071088	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	15	0	0	NA	exonic	Tmem47	nonsynonymous SNV	Tmem47:NM_138751:exon1:c.C154A:p.L52M	XqB	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	84474168	12A2p6	cell line	sgMsh2	84474168	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	25	0	0	NA	exonic	Dmd	synonymous SNV	Dmd:NM_007868:exon51:c.T7323A:p.S2441S	XqC1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M7_p20	chrX	85776446	12A2p6	cell line	sgMsh2	85776446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.609	36	0	0	NA	exonic	Gk	nonsynonymous SNV	"Gk:NM_001294138:exon1:c.A58G:p.T20A,Gk:NM_001294140:exon1:c.A58G:p.T20A,Gk:NM_001331046:exon1:c.A58G:p.T20A,Gk:NM_008194:exon1:c.A58G:p.T20A,Gk:NM_212444:exon1:c.A58G:p.T20A"	XqC1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	89405385	12A2p6	cell line	sgMsh2	89405385	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	152	0	0	NA	exonic	Dcaf8l	synonymous SNV	Dcaf8l:NM_008821:exon12:c.A1137G:p.V379V	XqC1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATA	synonymous	NA	NA	NA	NA
M7_p20	chrX	89753239	12A2p6	cell line	sgMsh2	89753239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	116	0	0	NA	exonic	4932429P05Rik	nonsynonymous SNV	4932429P05Rik:NM_001085511:exon2:c.T676C:p.Y226H	XqC1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	111	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	94536944	12A2p6	cell line	sgMsh2	94536944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	121	0	0	NA	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon11:c.A1880G:p.Y627C	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	94538842	12A2p6	cell line	sgMsh2	94538842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	29	0	0	NA	exonic	Maged1	nonsynonymous SNV	Maged1:NM_019791:exon4:c.A1178G:p.Q393R	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	95926565	12A2p6	cell line	sgMsh2	95926565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	53	0	0	NA	exonic	Zc3h12b	nonsynonymous SNV	Zc3h12b:NM_001034907:exon9:c.A1103G:p.Y368C	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	100506021	12A2p6	cell line	sgMsh2	100506021	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.591	135	0	0	NA	exonic	Igbp1	synonymous SNV	Igbp1:NM_008784:exon5:c.A843G:p.L281L	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAC	synonymous	NA	NA	NA	NA
M7_p20	chrX	100718024	12A2p6	cell line	sgMsh2	100718024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	64	0	0	NA	exonic	Kif4	nonsynonymous SNV	Kif4:NM_008446:exon26:c.A3067G:p.I1023V	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.5	9	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	102069453	12A2p6	cell line	sgMsh2	102069453	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	54	0	0	NA	exonic	Rtl5	synonymous SNV	Rtl5:NM_001278534:exon1:c.G1410A:p.E470E	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M7_p20	chrX	104086520	12A2p6	cell line	sgMsh2	104086520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	94	0	0	NA	exonic	Nexmif	nonsynonymous SNV	Nexmif:NM_001077354:exon4:c.A1790G:p.N597S	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTT	nonsynonymous	T	5	TTTTT	NA
M7_p20	chrX	105818050	12A2p6	cell line	sgMsh2	105818050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	47	0	0	NA	exonic	Atrx	synonymous SNV	Atrx:NM_009530:exon30:c.T6630C:p.D2210D	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7_p20	chrX	106930585	12A2p6	cell line	sgMsh2	106930585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	144	0	0	NA	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.G374A:p.S125N	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	106931045	12A2p6	cell line	sgMsh2	106931045	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	223	0	0	NA	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.A834C:p.Q278H	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	107946286	12A2p6	cell line	sgMsh2	107946286	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	110	0	0	NA	exonic	Gm732	synonymous SNV	Gm732:NM_001033252:exon2:c.T1020A:p.S340S	XqD	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M7_p20	chrX	112119806	12A2p6	cell line	sgMsh2	112119806	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	118	0	0	NA	exonic	Tex16	nonsynonymous SNV	Tex16:NM_031382:exon3:c.A1968T:p.K656N	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	112627170	12A2p6	cell line	sgMsh2	112627170	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.417	53	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_177747:exon6:c.G917A:p.S306N,Zfp711:NM_001381898:exon7:c.G917A:p.S306N"	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	112632850	12A2p6	cell line	sgMsh2	112632850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	108	0	0	NA	exonic	Zfp711	nonsynonymous SNV	"Zfp711:NM_001381900:exon8:c.A1577G:p.H526R,Zfp711:NM_001381899:exon9:c.A1577G:p.H526R,Zfp711:NM_177747:exon9:c.A1712G:p.H571R,Zfp711:NM_001381898:exon10:c.A1712G:p.H571R"	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	112656104	12A2p6	cell line	sgMsh2	112656104	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	197	0	0	NA	exonic	Pof1b	synonymous SNV	Pof1b:NM_181579:exon9:c.T936C:p.I312I	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAA	synonymous	NA	NA	NA	NA
M7_p20	chrX	119928431	12A2p6	cell line	sgMsh2	119928431	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	74	0	0	NA	exonic	Pabpc5	nonsynonymous SNV	Pabpc5:NM_053114:exon2:c.T442A:p.Y148N	XqE1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	120906122	12A2p6	cell line	sgMsh2	120906122	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.127	64	0	0	NA	exonic	Pcdh11x	nonsynonymous SNV	"Pcdh11x:NM_001271810:exon6:c.G3741A:p.M1247I,Pcdh11x:NM_001271809:exon7:c.G3771A:p.M1257I"	XqE2	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	130289939	12A2p6	cell line	sgMsh2	130289939	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	48	0	0	NA	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon25:c.A3098T:p.E1033V	XqE3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	133948737	12A2p6	cell line	sgMsh2	133948737	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	68	0	0	NA	exonic	Sytl4	nonsynonymous SNV	"Sytl4:NM_001290717:exon12:c.G1247A:p.S416N,Sytl4:NM_001290718:exon12:c.G1247A:p.S416N,Sytl4:NM_001290719:exon12:c.G1247A:p.S416N,Sytl4:NM_013757:exon12:c.G1247A:p.S416N"	XqE3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	135613266	12A2p6	cell line	sgMsh2	135613266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.506	121	0	0	NA	exonic	Prame	nonsynonymous SNV	Prame:NM_029459:exon10:c.G1273A:p.E425K	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	135842030	12A2p6	cell line	sgMsh2	135842030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	19	0	0	NA	exonic	Gprasp2	nonsynonymous SNV	"Gprasp2:NM_001359371:exon6:c.C137T:p.A46V,Gprasp2:NM_001163015:exon7:c.C137T:p.A46V,Gprasp2:NM_001163016:exon7:c.C137T:p.A46V,Gprasp2:NM_001163017:exon7:c.C137T:p.A46V"	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	136033961	12A2p6	cell line	sgMsh2	136033961	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.285	26	0	0	NA	exonic	Arxes1	synonymous SNV	Arxes1:NM_029541:exon1:c.G456A:p.P152P	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CGA	synonymous	NA	NA	NA	NA
M7_p20	chrX	136076062	12A2p6	cell line	sgMsh2	136076062	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	190	0	0	NA	exonic	Nxf3	nonsynonymous SNV	Nxf3:NM_001024141:exon12:c.A1028G:p.H343R	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	136214247	12A2p6	cell line	sgMsh2	136214247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	135	0	0	NA	exonic	Bex1	nonsynonymous SNV	Bex1:NM_009052:exon3:c.T332C:p.V111A	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAC	nonsynonymous	CCGC	8	CCGCCCGC	NA
M7_p20	chrX	136832106	12A2p6	cell line	sgMsh2	136832106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.588	19	0	0	NA	exonic	Plp1	synonymous SNV	"Plp1:NM_001290561:exon3:c.A345T:p.A115A,Plp1:NM_011123:exon3:c.A345T:p.A115A,Plp1:NM_001359117:exon4:c.A345T:p.A115A,Plp1:NM_001359118:exon4:c.A345T:p.A115A,Plp1:NM_001359120:exon4:c.A345T:p.A115A,Plp1:NM_001359119:exon5:c.A345T:p.A115A"	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAA	synonymous	NA	NA	NA	NA
M7_p20	chrX	136861391	12A2p6	cell line	sgMsh2	136861391	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	59	0	0	NA	exonic	Rab9b	nonsynonymous SNV	Rab9b:NM_176971:exon3:c.T259C:p.F87L	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	136995740	12A2p6	cell line	sgMsh2	136995740	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	57	0	0	NA	exonic	Zcchc18	nonsynonymous SNV	"Zcchc18:NM_001035510:exon2:c.G1103A:p.G368D,Zcchc18:NM_001035509:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358439:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358440:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358441:exon4:c.G1103A:p.G368D,Zcchc18:NM_025893:exon4:c.G1103A:p.G368D,Zcchc18:NM_001358437:exon5:c.G1103A:p.G368D"	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	139658867	12A2p6	cell line	sgMsh2	139658867	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.153	43	0	0	NA	exonic	Rnf128	nonsynonymous SNV	"Rnf128:NM_001254761:exon3:c.A706T:p.T236S,Rnf128:NM_023270:exon3:c.A784T:p.T262S"	XqF1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	151210902	12A2p6	cell line	sgMsh2	151210902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	113	0	0	NA	exonic	Wnk3	nonsynonymous SNV	"Wnk3:NM_001271678:exon4:c.T958C:p.Y320H,Wnk3:NM_001271679:exon4:c.T958C:p.Y320H"	XqF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	153392828	12A2p6	cell line	sgMsh2	153392828	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	41	0	0	NA	exonic	Klf8	nonsynonymous SNV	"Klf8:NM_173780:exon7:c.A1028T:p.D343V,Klf8:NM_001357183:exon8:c.A1028T:p.D343V"	XqF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	155054380	12A2p6	cell line	sgMsh2	155054380	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	333	0	0	NA	exonic	Magea5	synonymous SNV	Magea5:NM_020018:exon3:c.T15C:p.H5H	XqF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M7_p20	chrX	155574712	12A2p6	cell line	sgMsh2	155574712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	96	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon3:c.A1496G:p.Y499C	XqF3	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	163939348	12A2p6	cell line	sgMsh2	163939348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	122	0	0	NA	exonic	Zrsr2	nonsynonymous SNV	Zrsr2:NM_009453:exon10:c.T907C:p.C303R	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	164162297	12A2p6	cell line	sgMsh2	164162297	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	151	0	0	NA	exonic	Ace2	nonsynonymous SNV	"Ace2:NM_027286:exon6:c.A713C:p.E238A,Ace2:NM_001130513:exon7:c.A713C:p.E238A"	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	166427251	12A2p6	cell line	sgMsh2	166427251	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.59	47	0	0	NA	exonic	Ofd1	frameshift deletion	Ofd1:NM_177429:exon7:c.577delT:p.S193Pfs*2	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M7_p20	chrX	166568517	12A2p6	cell line	sgMsh2	166568517	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	66	0	0	NA	exonic	Egfl6	nonsynonymous SNV	Egfl6:NM_019397:exon2:c.T73C:p.W25R	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	167306156	12A2p6	cell line	sgMsh2	167306156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	138	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.T2333C:p.M778T,Tlr7:NM_133211:exon3:c.T2333C:p.M778T,Tlr7:NM_001290756:exon4:c.T2333C:p.M778T,Tlr7:NM_001290758:exon4:c.T2342C:p.M781T,Tlr7:NM_001290755:exon5:c.T2333C:p.M778T"	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M7_p20	chrX	169253600	12A2p6	cell line	sgMsh2	169253600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.551	85	0	0	NA	exonic	Arhgap6	synonymous SNV	"Arhgap6:NM_001287530:exon6:c.C726T:p.F242F,Arhgap6:NM_009707:exon6:c.C1302T:p.F434F,Arhgap6:NM_178754:exon6:c.C756T:p.F252F"	XqF5	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	TCC	synonymous	NA	NA	NA	NA
M7_p20	chrY	1016118	12A2p6	cell line	sgMsh2	1016118	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.501	88	0	0	NA	exonic	Eif2s3y	synonymous SNV	"Eif2s3y:NM_001357094:exon6:c.A162G:p.E54E,Eif2s3y:NM_012011:exon7:c.A699G:p.E233E"	YqA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAG	synonymous	NA	NA	NA	NA
M7_p20	chrY	1197294	12A2p6	cell line	sgMsh2	1197294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	92	0	0	NA	exonic	Uty	nonsynonymous SNV	"Uty:NM_001326682:exon6:c.T458C:p.V153A,Uty:NM_001326683:exon6:c.T272C:p.V91A,Uty:NM_009484:exon6:c.T461C:p.V154A"	YqA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M7_p20	chrY	1279493	12A2p6	cell line	sgMsh2	1279493	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	108	0	0	NA	exonic	Ddx3y	nonsynonymous SNV	Ddx3y:NM_012008:exon5:c.A370T:p.S124C	YqA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M7_p20	chrY	1367117	12A2p6	cell line	sgMsh2	1367117	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	129	0	0	NA	exonic	Usp9y	nonsynonymous SNV	Usp9y:NM_148943:exon22:c.A2969G:p.H990R	YqA1	NA	NA	NA	NA	0.9	4.205340083	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	57	176	33	0.1875	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9379613	TGG	synonymous	NA	NA	NA	NA
M8	chr1	6234357	12A2p6	cell line	sgMsh2	6234357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	124	64	9	0.140625	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon5:c.T327C:p.P109P	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8419958	CTG	synonymous	NA	NA	NA	NA
M8	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	67	80	13	0.1625	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	9546354	12A2p6	cell line	sgMsh2	9546354	C	T	SNV	Mutect2;Vardict	2	0.076	159	150	0	0	exonic	Rrs1	synonymous SNV	Rrs1:NM_021511:exon1:c.C831T:p.S277S	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.363720833	3	0.9990631	GCA	synonymous	NA	NA	NA	NA
M8	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	175	7	3	0.428571429	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	10209499	12A2p6	cell line	sgMsh2	10209499	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	199	220	54	0.245454545	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon6:c.A842C:p.E281A	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	10477102	12A2p6	cell line	sgMsh2	10477102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	84	0	0	NA	exonic	Cpa6	nonsynonymous SNV	"Cpa6:NM_001289497:exon5:c.A34G:p.R12G,Cpa6:NM_177834:exon6:c.A562G:p.R188G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	11204159	12A2p6	cell line	sgMsh2	11204159	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	177	0	0	NA	exonic	Prex2	nonsynonymous SNV	Prex2:NM_029525:exon33:c.C4054A:p.L1352M	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9998785	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	285	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9998693	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M8	chr1	13174927	12A2p6	cell line	sgMsh2	13174927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	131	27	3	0.111111111	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon11:c.C1546T:p.P516S,Ncoa2:NM_008678:exon11:c.C1546T:p.P516S"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9927383	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr1	20058356	12A2p6	cell line	sgMsh2	20058356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	83	4	2	0.5	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon67:c.C12122T:p.T4041I	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	99	2	0	0	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977469	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	88	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	TGC	synonymous	NA	NA	NA	NA
M8	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	136	134	21	0.156716418	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	25131380	12A2p6	cell line	sgMsh2	25131380	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	126	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon20:c.G2836A:p.A946T	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	GCG	nonsynonymous	GGT	9	GGTGGTGGT	NA
M8	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	166	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr1	26683612	12A2p6	cell line	sgMsh2	26683612	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	131	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C2486A:p.P829H	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr1	26687421	12A2p6	cell line	sgMsh2	26687421	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	425	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.G6T:p.E2D	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.148359814	3	1	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	38	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	45	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9771895	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	255	32	0	0	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999974	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	34135229	12A2p6	cell line	sgMsh2	34135229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	97	123	42	0.341463415	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon6:c.T554C:p.L185P,Dst:NM_134448:exon6:c.T554C:p.L185P,Dst:NM_001276764:exon9:c.T1088C:p.L363P"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	209	186	34	0.182795699	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999806	TAG	synonymous	NA	NA	NA	NA
M8	chr1	36812267	12A2p6	cell line	sgMsh2	36812267	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	139	181	44	0.243093923	exonic	Tmem131	nonsynonymous SNV	Tmem131:NM_018872:exon27:c.A2901C:p.Q967H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	CTT	nonsynonymous	CCTTGA	12	CCTTGACCTTGA	NA
M8	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	63	11	6	0.545454545	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	GGT	nonsynonymous	NA	NA	NA	NA
M8	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	59	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr1	37907566	12A2p6	cell line	sgMsh2	37907566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	101	0	0	NA	exonic	Lyg2	synonymous SNV	Lyg2:NM_001033427:exon6:c.T633C:p.H211H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	CAT	synonymous	NA	NA	NA	NA
M8	chr1	45334261	12A2p6	cell line	sgMsh2	45334261	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	219	0	0	NA	exonic	Col3a1	synonymous SNV	Col3a1:NM_009930:exon24:c.T1707G:p.G569G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999874	GTC	synonymous	NA	NA	NA	NA
M8	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	132	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8408088	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	213	176	42	0.238636364	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999837	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	40	101	8	0.079207921	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9718373	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr1	52663439	12A2p6	cell line	sgMsh2	52663439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	111	8	2	0.25	exonic	Mfsd6	synonymous SNV	"Mfsd6:NM_001357464:exon4:c.A1647G:p.T549T,Mfsd6:NM_133829:exon4:c.A1647G:p.T549T,Mfsd6:NM_178081:exon4:c.A1647G:p.T549T"	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9794341	GTG	synonymous	NA	NA	NA	NA
M8	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	206	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999779	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	262	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	309	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	131	404	90	0.222772277	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	58017170	12A2p6	cell line	sgMsh2	58017170	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	140	31	10	0.322580645	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.A2212G:p.I738V,Sgo2a:NM_199007:exon7:c.A2512G:p.I838V"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	165	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99987	CAG	synonymous	NA	NA	NA	NA
M8	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	42	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M8	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	95	28	8	0.285714286	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9965909	ATG	synonymous	NA	NA	NA	NA
M8	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	103	311	97	0.311897106	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	1	0.7086704	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	127	127	33	0.25984252	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.999071	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	143	64	19	0.296875	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	163	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998583	CTG	nonsynonymous	G	5	GGGGG	NA
M8	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	130	2	2	1	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr1	73917708	12A2p6	cell line	sgMsh2	73917708	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	123	104	36	0.346153846	exonic	Tns1	nonsynonymous SNV	"Tns1:NM_001289895:exon30:c.A5282G:p.D1761G,Tns1:NM_027884:exon32:c.A5345G:p.D1782G"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	74380617	12A2p6	cell line	sgMsh2	74380617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	99	0	0	NA	exonic	Slc11a1	nonsynonymous SNV	Slc11a1:NM_013612:exon7:c.A571G:p.K191E	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977469	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	138	1	0	0	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	157	61	14	0.229508197	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998163	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	189	30	4	0.133333333	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	62	1	0	0	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	104	192	33	0.171875	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	TAG	synonymous	NA	NA	NA	NA
M8	chr1	75241415	12A2p6	cell line	sgMsh2	75241415	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	155	51	6	0.117647059	exonic	Dnajb2	nonsynonymous SNV	"Dnajb2:NM_001159885:exon7:c.G555A:p.M185I,Dnajb2:NM_020266:exon7:c.G501A:p.M167I,Dnajb2:NM_001159883:exon8:c.G555A:p.M185I,Dnajb2:NM_001159884:exon8:c.G555A:p.M185I,Dnajb2:NM_178055:exon8:c.G555A:p.M185I"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.969575	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	59	2	0	0	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.8783313	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	75547258	12A2p6	cell line	sgMsh2	75547258	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.308	61	5	1	0.2	exonic	Slc4a3	frameshift insertion	"Slc4a3:NM_001357149:exon3:c.77_78insA:p.L27Sfs*9,Slc4a3:NM_001357150:exon3:c.77_78insA:p.L27Sfs*9,Slc4a3:NM_009208:exon3:c.77_78insA:p.L27Sfs*9"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CCT	frameshift	C	5	CCCCC	1
M8	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	154	196	6	0.030612245	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9923062	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	121	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.183	139	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	114	1	1	1	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988211	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	87407427	12A2p6	cell line	sgMsh2	87407427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	133	19	1	0.052631579	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon11:c.G1050A:p.E350E,Gigyf2:NM_146112:exon11:c.G1068A:p.E356E"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	AGG	synonymous	G	5	GGGGG	NA
M8	chr1	88233353	12A2p6	cell line	sgMsh2	88233353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	466	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon7:c.T692G:p.L231R	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.358935033	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	88241627	12A2p6	cell line	sgMsh2	88241627	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	536	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon19:c.T2014C:p.F672L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.258433224	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	354	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.32543443	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	88255112	12A2p6	cell line	sgMsh2	88255112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	343	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3680C:p.L1227P	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.320648629	3	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	88255241	12A2p6	cell line	sgMsh2	88255241	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	256	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon33:c.T3809C:p.L1270P	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.282362226	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	91345008	12A2p6	cell line	sgMsh2	91345008	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	34	0	0	NA	exonic	Espnl	nonsynonymous SNV	Espnl:NM_001033292:exon9:c.A2089G:p.M697V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9637945	GAT	nonsynonymous	TGGG	8	TGGGTGGG	NA
M8	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	109	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	237	64	0	0	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.9224852	AAG	synonymous	NA	NA	NA	NA
M8	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	106	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9705126	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	148	25	5	0.2	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	89	150	37	0.246666667	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	TAG	synonymous	NA	NA	NA	NA
M8	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	70	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8	chr1	97785194	12A2p6	cell line	sgMsh2	97785194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	115	20	2	0.1	exonic	Gin1	nonsynonymous SNV	"Gin1:NM_001310773:exon6:c.T704G:p.V235G,Gin1:NM_026250:exon6:c.T971G:p.V324G"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	110084953	12A2p6	cell line	sgMsh2	110084953	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	179	0	0	NA	exonic	Cdh7	nonsynonymous SNV	"Cdh7:NM_001316743:exon7:c.C1015A:p.L339M,Cdh7:NM_172853:exon7:c.C1015A:p.L339M,Cdh7:NM_001316744:exon8:c.C841A:p.L281M"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.242	335	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAT	frameshift	T	5	TTTTT	1
M8	chr1	118652963	12A2p6	cell line	sgMsh2	118652963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	152	2	0	0	exonic	Tfcp2l1	nonsynonymous SNV	Tfcp2l1:NM_023755:exon4:c.T386C:p.I129T	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	65	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	198	54	17	0.314814815	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	GTT	synonymous	NA	NA	NA	NA
M8	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	131	61	15	0.245901639	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.7452747	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr1	123384300	12A2p6	cell line	sgMsh2	123384300	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	186	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon15:c.G1358T:p.G453V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.245	251	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	145	54	11	0.203703704	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9956765	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr1	127838530	12A2p6	cell line	sgMsh2	127838530	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	93	0	0	NA	exonic	Map3k19	nonsynonymous SNV	Map3k19:NM_011737:exon6:c.T656C:p.L219P	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.5287896	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	151	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	228	51	0.223684211	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	206	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9978884	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	283	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	131436810	12A2p6	cell line	sgMsh2	131436810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	111	77	22	0.285714286	exonic	Srgap2	nonsynonymous SNV	Srgap2:NM_001081011:exon3:c.G125A:p.R42Q	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9584371	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	64	15	4	0.266666667	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	GTA	synonymous	NA	NA	NA	NA
M8	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	68	75	18	0.24	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9914421	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M8	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	137	34	8	0.235294118	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	GGC	synonymous	NA	NA	NA	NA
M8	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	186	103	22	0.213592233	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8899591	CTG	synonymous	NA	NA	NA	NA
M8	chr1	133133410	12A2p6	cell line	sgMsh2	133133410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	103	213	40	0.187793427	exonic	Ppp1r15b	nonsynonymous SNV	Ppp1r15b:NM_133819:exon1:c.A1664G:p.K555R	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9762335	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	105	14	1	0.071428571	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.159	200	65	7	0.107692308	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.9304056	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.159	200	66	8	0.121212121	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.9304056	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	136214410	12A2p6	cell line	sgMsh2	136214410	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	182	144	0	0	exonic	Inava	frameshift deletion	Inava:NM_028872:exon10:c.1950delC:p.V651Cfs*52	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8	chr1	139447488	12A2p6	cell line	sgMsh2	139447488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	209	48	9	0.1875	exonic	Zbtb41	synonymous SNV	Zbtb41:NM_172643:exon11:c.A2685T:p.T895T	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999806	CAG	synonymous	NA	NA	NA	NA
M8	chr1	139480477	12A2p6	cell line	sgMsh2	139480477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	186	4	1	0.25	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon18:c.T7101C:p.H2367H	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9997161	ATT	synonymous	NA	NA	NA	NA
M8	chr1	139739632	12A2p6	cell line	sgMsh2	139739632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	199	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon7:c.A990G:p.V330V,Gm4788:NM_001160303:exon7:c.A987G:p.V329V,Gm4788:NM_001160304:exon7:c.A990G:p.V330V"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CTA	synonymous	NA	NA	NA	NA
M8	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.23	301	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	268	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999985	TAT	synonymous	NA	NA	NA	NA
M8	chr1	140100922	12A2p6	cell line	sgMsh2	140100922	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.201	142	0	0	NA	exonic	Cfh	frameshift insertion	Cfh:NM_009888:exon19:c.3087dupA:p.S1030Ifs*2	1qF	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	NA	NA	GAT	frameshift	T	5	TTTTT	1
M8	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	183	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.999805	TTT	synonymous	NA	NA	NA	NA
M8	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	83	210	46	0.219047619	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	129	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9874414	CCA	nonsynonymous	NA	NA	NA	NA
M8	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	174	271	60	0.221402214	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	214	68	14	0.205882353	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999844	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	27	310	69	0.222580645	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9516111	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr1	154398794	12A2p6	cell line	sgMsh2	154398794	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	75	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon47:c.G6421T:p.G2141C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9848991	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	274	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	96	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	AAG	nonsynonymous	A	5	AAAAA	NA
M8	chr1	155293260	12A2p6	cell line	sgMsh2	155293260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	122	86	15	0.174418605	exonic	Xpr1	nonsynonymous SNV	Xpr1:NM_011273:exon12:c.A1517G:p.D506G	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	230	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9968682	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	161876351	12A2p6	cell line	sgMsh2	161876351	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	29	57	16	0.280701754	exonic	Suco	synonymous SNV	"Suco:NM_001357401:exon1:c.T22C:p.L8L,Suco:NM_001357402:exon1:c.T22C:p.L8L,Suco:NM_172645:exon1:c.T22C:p.L8L"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9554425	AAG	synonymous	NA	NA	NA	NA
M8	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	206	39	10	0.256410256	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999779	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	216	26	6	0.230769231	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	CCA	synonymous	NA	NA	NA	NA
M8	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	143	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	91	16	5	0.3125	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	134	3	1	0.333333333	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr1	167356717	12A2p6	cell line	sgMsh2	167356717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	81	153	25	0.163398693	exonic	Aldh9a1	synonymous SNV	Aldh9a1:NM_019993:exon5:c.T780C:p.T260T	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CTG	synonymous	NA	NA	NA	NA
M8	chr1	167365824	12A2p6	cell line	sgMsh2	167365824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	83	181	35	0.193370166	exonic	Aldh9a1	nonsynonymous SNV	Aldh9a1:NM_019993:exon10:c.T1399C:p.C467R	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9534811	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	180	171	47	0.274853801	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	ATA	synonymous	NA	NA	NA	NA
M8	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	213	85	19	0.223529412	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9958102	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	94	117	29	0.247863248	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9433218	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	50	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	172598223	12A2p6	cell line	sgMsh2	172598223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	152	0	0	NA	exonic	Fcrl6	nonsynonymous SNV	Fcrl6:NM_001164725:exon5:c.T710G:p.F237C	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	320	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	318	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr1	173222609	12A2p6	cell line	sgMsh2	173222609	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	242	0	0	NA	exonic	Fcer1a	synonymous SNV	Fcer1a:NM_010184:exon4:c.C513T:p.T171T	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999954	AGG	synonymous	NA	NA	NA	NA
M8	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.083	263	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	3	0.9994015	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	302	1	0	0	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	ATG	synonymous	NA	NA	NA	NA
M8	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	306	134	0	0	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9999984	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	128	121	33	0.272727273	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	97	22	5	0.227272727	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	ATA	synonymous	NA	NA	NA	NA
M8	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	101	125	27	0.216	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	130	125	29	0.232	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr1	180694831	12A2p6	cell line	sgMsh2	180694831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	71	0	0	NA	exonic	Mixl1	nonsynonymous SNV	Mixl1:NM_013729:exon2:c.T484C:p.C162R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.2033	123	89	8	0.08988764	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.972953229	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M8	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	93	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9281301	CCT	synonymous	NA	NA	NA	NA
M8	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	137	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	CCA	nonsynonymous	NA	NA	NA	NA
M8	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	142	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr1	193335467	12A2p6	cell line	sgMsh2	193335467	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	54	56	10	0.178571429	exonic	Lamb3	synonymous SNV	"Lamb3:NM_001277928:exon18:c.G2655A:p.R885R,Lamb3:NM_008484:exon18:c.G2655A:p.R885R"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9780619	GGC	synonymous	NA	NA	NA	NA
M8	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	85	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr10	3937940	12A2p6	cell line	sgMsh2	3937940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	90	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon7:c.A868G:p.N290D,Plekhg1:NM_001159942:exon8:c.A868G:p.N290D"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9472015	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	46	137	29	0.211678832	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	0.7655305	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	163	41	8	0.195121951	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998583	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	191	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9998547	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	7867320	12A2p6	cell line	sgMsh2	7867320	C	A	SNV	Mutect2;Strelka2;MuSe	3	0.172	30	0	0	NA	exonic	Zc3h12d	nonsynonymous SNV	Zc3h12d:NM_172785:exon6:c.C853A:p.H285N	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.8402415	CCA	nonsynonymous	NA	NA	NA	NA
M8	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	223	24	4	0.166666667	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999894	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	185	29	9	0.310344828	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	223	82	25	0.304878049	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999894	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	118	19	9	0.473684211	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9901418	CGC	synonymous	NA	NA	NA	NA
M8	chr10	13690565	12A2p6	cell line	sgMsh2	13690565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	178	109	20	0.183486239	exonic	Aig1	synonymous SNV	"Aig1:NM_001347362:exon4:c.A474G:p.G158G,Aig1:NM_025446:exon4:c.A474G:p.G158G"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	GTC	synonymous	NA	NA	NA	NA
M8	chr10	13829244	12A2p6	cell line	sgMsh2	13829244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	141	104	15	0.144230769	exonic	Aig1	nonsynonymous SNV	"Aig1:NM_001347362:exon2:c.T296C:p.V99A,Aig1:NM_025446:exon2:c.T296C:p.V99A"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9994743	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	122	41	5	0.12195122	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.998665	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	91	59	15	0.254237288	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.7122335	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	115	50	12	0.24	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	173	25	4	0.16	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999908	CAC	synonymous	NA	NA	NA	NA
M8	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	51	8	3	0.375	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9132611	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.519	65	7	3	0.428571429	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	65	130	25	0.192307692	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr10	23984924	12A2p6	cell line	sgMsh2	23984924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	179	0	0	NA	exonic	Taar6	synonymous SNV	Taar6:NM_001010828:exon1:c.C723A:p.S241S	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	AGG	synonymous	NA	NA	NA	NA
M8	chr10	24050478	12A2p6	cell line	sgMsh2	24050478	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	453	0	0	NA	exonic	Taar7f	synonymous SNV	Taar7f:NM_001010839:exon1:c.T969G:p.P323P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.51E-09	CTT	synonymous	NA	NA	NA	NA
M8	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.267	153	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	110	253	65	0.256916996	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.984208	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	25994095	12A2p6	cell line	sgMsh2	25994095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	150	23	4	0.173913043	exonic	Tmem200a	nonsynonymous SNV	"Tmem200a:NM_029881:exon2:c.A275G:p.D92G,Tmem200a:NM_001358814:exon3:c.A275G:p.D92G"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9982537	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	134	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	26986857	12A2p6	cell line	sgMsh2	26986857	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	121	0	0	NA	exonic	Lama2	nonsynonymous SNV	Lama2:NM_008481:exon62:c.C8909A:p.T2970N	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9908126	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	117	48	0	0	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr10	39824323	12A2p6	cell line	sgMsh2	39824323	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	167	44	13	0.295454545	exonic	Rev3l	synonymous SNV	Rev3l:NM_011264:exon13:c.C4815A:p.T1605T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998808	CCT	synonymous	NA	NA	NA	NA
M8	chr10	40227566	12A2p6	cell line	sgMsh2	40227566	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	169	114	22	0.192982456	exonic	Rpf2	nonsynonymous SNV	"Rpf2:NM_001042556:exon8:c.A490C:p.S164R,Rpf2:NM_023323:exon8:c.A589C:p.S197R"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	41251788	12A2p6	cell line	sgMsh2	41251788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	97	46	7	0.152173913	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon15:c.T1679C:p.I560T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	143	37	8	0.216216216	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	56	1	0	0	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	GTT	synonymous	NA	NA	NA	NA
M8	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	65	27	2	0.074074074	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.698726864	2	0.673587	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	62	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	1	0.9791344	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	153	101	11	0.108910891	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8850118	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr10	51626701	12A2p6	cell line	sgMsh2	51626701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	311	0	0	NA	exonic	Gprc6a	synonymous SNV	Gprc6a:NM_153071:exon3:c.T1065C:p.H355H	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CAT	synonymous	NA	NA	NA	NA
M8	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	72	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	TAC	synonymous	NA	NA	NA	NA
M8	chr10	53674660	12A2p6	cell line	sgMsh2	53674660	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	133	0	0	NA	exonic	Fam184a	frameshift deletion	Fam184a:NM_001081428:exon9:c.2003delA:p.K668Sfs*9	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr10	58464235	12A2p6	cell line	sgMsh2	58464235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	215	197	48	0.243654822	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon11:c.T1608C:p.C536C	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9717669	GTA	synonymous	NA	NA	NA	NA
M8	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	263	139	35	0.251798561	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999981	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr10	58478457	12A2p6	cell line	sgMsh2	58478457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	88	231	41	0.177489177	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A4998G:p.E1666E	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	AAT	synonymous	NA	NA	NA	NA
M8	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	54	54	21	0.388888889	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9351314	CAC	synonymous	NA	NA	NA	NA
M8	chr10	59403838	12A2p6	cell line	sgMsh2	59403838	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	56	0	0	NA	exonic	Pla2g12b	nonsynonymous SNV	Pla2g12b:NM_023530:exon1:c.C68A:p.P23H	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	123	20	6	0.3	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	103	57	13	0.228070175	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	230	33	5	0.151515152	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr10	62963968	12A2p6	cell line	sgMsh2	62963968	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	253	0	0	NA	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon14:c.A2150G:p.E717G	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999971	GAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
M8	chr10	63130992	12A2p6	cell line	sgMsh2	63130992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	107	0	0	NA	exonic	Mypn	synonymous SNV	Mypn:NM_182992:exon13:c.T2904C:p.P968P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	CAG	synonymous	NA	NA	NA	NA
M8	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	119	87	10	0.114942529	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9210156	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	63322046	12A2p6	cell line	sgMsh2	63322046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	274	33	10	0.303030303	exonic	Sirt1	nonsynonymous SNV	"Sirt1:NM_001159589:exon7:c.T1471C:p.S491P,Sirt1:NM_019812:exon8:c.T1588C:p.S530P"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9998797	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	68098190	12A2p6	cell line	sgMsh2	68098190	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	161	78	0	0	exonic	Arid5b	synonymous SNV	Arid5b:NM_023598:exon10:c.T1881G:p.T627T	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.445079441	2	0.8402755	CAG	synonymous	NA	NA	NA	NA
M8	chr10	68128893	12A2p6	cell line	sgMsh2	68128893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	129	96	19	0.197916667	exonic	Arid5b	nonsynonymous SNV	Arid5b:NM_023598:exon6:c.A947G:p.E316G	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626939857	2	0.9968257	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	176	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9937266	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	69285714	12A2p6	cell line	sgMsh2	69285714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	117	13	4	0.307692308	exonic	Rhobtb1	nonsynonymous SNV	"Rhobtb1:NM_001081347:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252636:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252637:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252638:exon10:c.A1391C:p.K464T"	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	69898323	12A2p6	cell line	sgMsh2	69898323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	133	21	7	0.333333333	exonic	Ank3	synonymous SNV	"Ank3:NM_146005:exon20:c.T2328C:p.T776T,Ank3:NM_170688:exon20:c.T2328C:p.T776T,Ank3:NM_170689:exon20:c.T2328C:p.T776T,Ank3:NM_170690:exon20:c.T2328C:p.T776T,Ank3:NM_170728:exon20:c.T2328C:p.T776T,Ank3:NM_170729:exon20:c.T2328C:p.T776T"	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	CTG	synonymous	NA	NA	NA	NA
M8	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	82	214	56	0.261682243	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	AAG	synonymous	NA	NA	NA	NA
M8	chr10	76420353	12A2p6	cell line	sgMsh2	76420353	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	65	9	4	0.444444444	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon12:c.C2052A:p.S684S,Pcnt:NM_008787:exon12:c.C2052A:p.S684S"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	AGG	synonymous	GGA	8	GGAGGAGG	NA
M8	chr10	76420356	12A2p6	cell line	sgMsh2	76420356	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	64	9	0	0	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon12:c.C2049A:p.A683A,Pcnt:NM_008787:exon12:c.C2049A:p.A683A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	AGG	synonymous	GGA	8	GGAGGAGG	NA
M8	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	158	64	8	0.125	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr10	76614891	12A2p6	cell line	sgMsh2	76614891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	73	6	2	0.333333333	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon3:c.T205C:p.S69P,Col6a2:NM_146007:exon3:c.T205C:p.S69P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	76712320	12A2p6	cell line	sgMsh2	76712320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	133	37	14	0.378378378	exonic	Col6a1	nonsynonymous SNV	Col6a1:NM_009933:exon30:c.A1901G:p.K634R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	50	30	6	0.2	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	CAC	synonymous	NA	NA	NA	NA
M8	chr10	76800762	12A2p6	cell line	sgMsh2	76800762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	123	34	9	0.264705882	exonic	Pcbp3	nonsynonymous SNV	"Pcbp3:NM_001347216:exon4:c.A163G:p.K55E,Pcbp3:NM_021568:exon4:c.A163G:p.K55E"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	85	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9671569	CTG	synonymous	NA	NA	NA	NA
M8	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	200	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999714	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	167	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.7252514	AAG	synonymous	NA	NA	NA	NA
M8	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	171	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998997	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	78801841	12A2p6	cell line	sgMsh2	78801841	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	96	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.G1200T:p.E400D	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9952378	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M8	chr10	79626336	12A2p6	cell line	sgMsh2	79626336	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	63	44	6	0.136363636	exonic	Shc2	synonymous SNV	Shc2:NM_001024539:exon8:c.G972A:p.E324E	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	GCT	synonymous	NA	NA	NA	NA
M8	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	51	47	11	0.234042553	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8606822	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	34	14	3	0.214285714	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9637945	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	144	35	6	0.171428571	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	GAC	synonymous	NA	NA	NA	NA
M8	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	64	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M8	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	61	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.7932531	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	80315539	12A2p6	cell line	sgMsh2	80315539	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	22	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.T6339C:p.G2113G,Apc2:NM_001372237:exon15:c.T6426C:p.G2142G,Apc2:NM_001372238:exon15:c.T6429C:p.G2143G,Apc2:NM_001372239:exon15:c.T6354C:p.G2118G,Apc2:NM_001372240:exon15:c.T6468C:p.G2156G,Apc2:NM_001372241:exon15:c.T6465C:p.G2155G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9406209	GTA	synonymous	NA	NA	NA	NA
M8	chr10	80320283	12A2p6	cell line	sgMsh2	80320283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	38	52	4	0.076923077	exonic	2310011J03Rik	synonymous SNV	2310011J03Rik:NM_025521:exon1:c.A30G:p.V10V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	GTA	synonymous	NA	NA	NA	NA
M8	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	44	6	0	0	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	36	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.966695	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	35	3	1	0.333333333	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9652739	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr10	80612359	12A2p6	cell line	sgMsh2	80612359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	102	94	19	0.20212766	exonic	Scamp4	nonsynonymous SNV	Scamp4:NM_019575:exon6:c.T413C:p.V138A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	119	61	12	0.196721311	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	103	87	18	0.206896552	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	120	92	19	0.206521739	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	63	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	55	48	10	0.208333333	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	142	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9973246	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	111	7	1	0.142857143	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	TTG	synonymous	NA	NA	NA	NA
M8	chr10	81595483	12A2p6	cell line	sgMsh2	81595483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	110	28	5	0.178571429	exonic	Tle6	nonsynonymous SNV	"Tle6:NM_001359134:exon3:c.T418C:p.S140P,Tle6:NM_001359135:exon3:c.T418C:p.S140P,Tle6:NM_001346695:exon6:c.T637C:p.S213P,Tle6:NM_053254:exon6:c.T637C:p.S213P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	89	78	19	0.243589744	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	89	65	15	0.230769231	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	138	82	23	0.280487805	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	119	420	100	0.238095238	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr10	105413234	12A2p6	cell line	sgMsh2	105413234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	82	11	3	0.272727273	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C637A:p.L213M	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	88	210	31	0.147619048	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr10	109705616	12A2p6	cell line	sgMsh2	109705616	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	305	0	0	NA	exonic	Nav3	frameshift deletion	"Nav3:NM_001368815:exon30:c.5764delA:p.T1922Lfs*5,Nav3:NM_001081035:exon31:c.5785delA:p.T1929Lfs*5"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	88	42	11	0.261904762	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	TAC	synonymous	NA	NA	NA	NA
M8	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	147	3	0	0	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.999501	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	61	5	2	0.4	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M8	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	90	1	0	0	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.7545306	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	177	83	17	0.204819277	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9998469	TTT	nonsynonymous	T	5	TTTTT	NA
M8	chr10	121615116	12A2p6	cell line	sgMsh2	121615116	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	132	335	36	0.107462687	exonic	Xpot	frameshift deletion	"Xpot:NM_001081056:exon6:c.378delT:p.F126Lfs*8,Xpot:NM_001359618:exon6:c.378delT:p.F126Lfs*8"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M8	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	119	3	3	1	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	67	31	11	0.35483871	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	CCG	synonymous	NA	NA	NA	NA
M8	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	132	64	2	0.03125	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr10	127495153	12A2p6	cell line	sgMsh2	127495153	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	65	70	1	0.014285714	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon21:c.2500delG:p.G835Vfs*41,R3hdm2:NM_001359245:exon21:c.2500delG:p.G835Vfs*41,R3hdm2:NM_001359246:exon21:c.2542delG:p.G849Vfs*41,R3hdm2:NM_027900:exon21:c.2461delG:p.G822Vfs*41,R3hdm2:NM_001359243:exon22:c.2596delG:p.G867Vfs*41,R3hdm2:NM_001168292:exon23:c.2596delG:p.G867Vfs*41,R3hdm2:NM_001359244:exon23:c.2500delG:p.G835Vfs*41"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	144	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr10	127556941	12A2p6	cell line	sgMsh2	127556941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	99	140	38	0.271428571	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon51:c.T8254C:p.W2752R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977469	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	141	94	27	0.287234043	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	112	120	31	0.258333333	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9926547	AAC	synonymous	NA	NA	NA	NA
M8	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	221	243	74	0.304526749	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	CAC	synonymous	NA	NA	NA	NA
M8	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	197	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	101	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.994843	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M8	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	138	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	288	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	333	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	414	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr11	3186096	12A2p6	cell line	sgMsh2	3186096	T	C	SNV	Mutect2;Vardict	2	0.009884	1564	10	0	0	exonic	Sfi1	nonsynonymous SNV	Sfi1:NM_030207:exon4:c.A235G:p.T79A	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.047302852	3	1	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	96	109	18	0.165137615	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	CTG	synonymous	NA	NA	NA	NA
M8	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	107	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	53	51	11	0.215686275	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9837534	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	152	14	2	0.142857143	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.999664	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	88	37	11	0.297297297	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	197	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	91	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	GTG	synonymous	NA	NA	NA	NA
M8	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	82	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	GTC	synonymous	NA	NA	NA	NA
M8	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	132	2	0	0	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	TTA	synonymous	NA	NA	NA	NA
M8	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	158	629	155	0.246422893	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	GCA	synonymous	NA	NA	NA	NA
M8	chr11	21712059	12A2p6	cell line	sgMsh2	21712059	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	102	10	3	0.3	exonic	Wdpcp	synonymous SNV	"Wdpcp:NM_001364768:exon9:c.C1093T:p.L365L,Wdpcp:NM_145425:exon10:c.C1330T:p.L444L"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	ACT	synonymous	NA	NA	NA	NA
M8	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	148	5	0	0	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	144	6	3	0.5	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M8	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	178	133	19	0.142857143	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	ACC	nonsynonymous	NA	NA	NA	NA
M8	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	224	57	17	0.298245614	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	132	53	8	0.150943396	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9673641	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	124	81	16	0.197530864	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	CTT	synonymous	NA	NA	NA	NA
M8	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	161	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.999767	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	213	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999719	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	34089644	12A2p6	cell line	sgMsh2	34089644	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	170	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon20:c.A1443T:p.Q481H	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9971077	AAG	nonsynonymous	AAGTC	10	AAGTCAAGTC	NA
M8	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	107	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	248	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.5594634	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	87	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	57	103	34	0.330097087	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	CAC	synonymous	NA	NA	NA	NA
M8	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	186	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999158	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M8	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	193	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999613	GTT	synonymous	NA	NA	NA	NA
M8	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	146	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	CTG	synonymous	NA	NA	NA	NA
M8	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	116	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	188	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	251	44	6	0.136363636	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	AAC	synonymous	AACA	8	AACAAACA	NA
M8	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	90	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	115	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9894226	ATG	synonymous	NA	NA	NA	NA
M8	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	411	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.11E-09	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	286	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	99	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977469	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	54	0	0	NA	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844305	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	171	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998997	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	50859375	12A2p6	cell line	sgMsh2	50859375	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	75	0	0	NA	exonic	Grm6	synonymous SNV	Grm6:NM_173372:exon8:c.C1455T:p.G485G	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	GCC	synonymous	NA	NA	NA	NA
M8	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	179	147	36	0.244897959	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	ACC	nonsynonymous	NA	NA	NA	NA
M8	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	128	7	2	0.285714286	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	141	321	15	0.046728972	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	76	145	40	0.275862069	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939302	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	122	71	15	0.211267606	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	GTA	synonymous	NA	NA	NA	NA
M8	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	191	8	4	0.5	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9996058	AAC	nonsynonymous	A	5	AAAAA	NA
M8	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	57	79	16	0.202531646	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	GTA	synonymous	NA	NA	NA	NA
M8	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	89	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	151	61	9	0.147540984	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	1	0.9988575	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M8	chr11	58207230	12A2p6	cell line	sgMsh2	58207230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	179	9	2	0.222222222	exonic	Igtp	nonsynonymous SNV	Igtp:NM_018738:exon3:c.T1226C:p.L409P	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9997146	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	58286694	12A2p6	cell line	sgMsh2	58286694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	71	0	0	NA	exonic	4930438A08Rik	synonymous SNV	4930438A08Rik:NM_001374705:exon2:c.T228C:p.A76A	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	CTG	synonymous	NA	NA	NA	NA
M8	chr11	58665966	12A2p6	cell line	sgMsh2	58665966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	111	0	0	NA	exonic	Olfr322	nonsynonymous SNV	Olfr322:NM_207693:exon1:c.A406G:p.M136V	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	58720856	12A2p6	cell line	sgMsh2	58720856	C	T	SNV	Mutect2;Vardict	2	0.031	485	0	0	NA	exonic	Olfr318	nonsynonymous SNV	Olfr318:NM_146501:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.148359814	3	1	GCT	nonsynonymous	GCTG	8	GCTGGCTG	NA
M8	chr11	58720914	12A2p6	cell line	sgMsh2	58720914	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	499	0	0	NA	exonic	Olfr318	synonymous SNV	Olfr318:NM_146501:exon1:c.C133T:p.L45L	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.07E-09	AGT	synonymous	NA	NA	NA	NA
M8	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.084	514	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.402007237	3	0.9999998	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M8	chr11	58920433	12A2p6	cell line	sgMsh2	58920433	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	61	0	0	NA	exonic	Btnl10	nonsynonymous SNV	"Btnl10:NM_001363414:exon4:c.A581G:p.H194R,Btnl10:NM_138678:exon4:c.A581G:p.H194R"	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	59759560	12A2p6	cell line	sgMsh2	59759560	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	67	22	3	0.136363636	exonic	Mprip	synonymous SNV	Mprip:NM_001368931:exon16:c.T4551G:p.A1517A	11qB1.3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	CTT	synonymous	NA	NA	NA	NA
M8	chr11	60280242	12A2p6	cell line	sgMsh2	60280242	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	296	48	3	0.0625	exonic	Tom1l2	nonsynonymous SNV	"Tom1l2:NM_001039092:exon2:c.C94G:p.L32V,Tom1l2:NM_001039093:exon2:c.C94G:p.L32V,Tom1l2:NM_001359810:exon2:c.C94G:p.L32V,Tom1l2:NM_153080:exon2:c.C94G:p.L32V"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.354149232	3	3.45E-08	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	53	96	17	0.177083333	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9837534	ACG	synonymous	NA	NA	NA	NA
M8	chr11	60720712	12A2p6	cell line	sgMsh2	60720712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	86	88	22	0.25	exonic	Flii	nonsynonymous SNV	"Flii:NM_001302207:exon11:c.A1172G:p.N391S,Flii:NM_022009:exon11:c.A1172G:p.N391S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	104	195	47	0.241025641	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	61707657	12A2p6	cell line	sgMsh2	61707657	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	48	15	0.3125	exonic	Fam83g	nonsynonymous SNV	Fam83g:NM_178618:exon5:c.C2369A:p.A790D	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	105	144	35	0.243055556	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.269	91	221	7	0.031674208	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;MuSe;Vardict	3	0.141	75	195	9	0.046153846	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.674797862	2	9.00E-07	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.212	306	1540	399	0.259090909	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr11	65005504	12A2p6	cell line	sgMsh2	65005504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	144	7	5	0.714285714	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_175003:exon20:c.T2289C:p.A763A	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	CAG	synonymous	NA	NA	NA	NA
M8	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	117	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	108	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984723	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	225	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999903	GTG	synonymous	NA	NA	NA	NA
M8	chr11	67209100	12A2p6	cell line	sgMsh2	67209100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	186	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon16:c.A1835G:p.Y612C	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	258	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999977	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr11	67258685	12A2p6	cell line	sgMsh2	67258685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	152	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon36:c.A5242G:p.I1748V	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	178	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9988073	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	339	54	3	0.055555556	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	69185730	12A2p6	cell line	sgMsh2	69185730	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	104	0	0	NA	exonic	Alox8	synonymous SNV	Alox8:NM_009661:exon13:c.A1842G:p.E614E	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	1	0.6475256	GTT	synonymous	NA	NA	NA	NA
M8	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	56	22	5	0.227272727	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133045-69579350	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	97	97	21	0.216494845	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	69778138	12A2p6	cell line	sgMsh2	69778138	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	39	43	7	0.162790698	exonic	Zbtb4	synonymous SNV	"Zbtb4:NM_001363178:exon4:c.G1686A:p.G562G,Zbtb4:NM_029348:exon4:c.G1686A:p.G562G"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.970629	GGA	synonymous	NA	NA	NA	NA
M8	chr11	69912027	12A2p6	cell line	sgMsh2	69912027	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	39	23	4	0.173913043	exonic	Neurl4	frameshift deletion	"Neurl4:NM_001291119:exon27:c.4348delC:p.P1451Lfs*91,Neurl4:NM_001013414:exon28:c.4420delC:p.P1475Lfs*91,Neurl4:NM_001291118:exon28:c.4414delC:p.P1473Lfs*91"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	55	1	0	0	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631725658	2	0.7925221	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	70017427	12A2p6	cell line	sgMsh2	70017427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	84	0	0	NA	exonic	Dlg4	synonymous SNV	Dlg4:NM_001370675:exon2:c.A25C:p.R9R	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9824109	CAG	synonymous	NA	NA	NA	NA
M8	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	81	10	1	0.1	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9789152	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	82	1	1	1	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M8	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	122	13	5	0.384615385	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	72442579	12A2p6	cell line	sgMsh2	72442579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	267	694	155	0.223342939	exonic	Mybbp1a	synonymous SNV	Mybbp1a:NM_016776:exon4:c.A382C:p.R128R	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999984	GAG	synonymous	NA	NA	NA	NA
M8	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	59	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	72975415	12A2p6	cell line	sgMsh2	72975415	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	59	7	1	0.142857143	exonic	Atp2a3	nonsynonymous SNV	"Atp2a3:NM_001163336:exon8:c.C860A:p.S287Y,Atp2a3:NM_001163337:exon8:c.C860A:p.S287Y,Atp2a3:NM_016745:exon8:c.C860A:p.S287Y"	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	TCC	nonsynonymous	NA	NA	NA	NA
M8	chr11	73602988	12A2p6	cell line	sgMsh2	73602988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	287	0	0	NA	exonic	Olfr384	nonsynonymous SNV	Olfr384:NM_207224:exon1:c.T407C:p.M136T	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr11	73787842	12A2p6	cell line	sgMsh2	73787842	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.223	114	0	0	NA	exonic	Olfr390	frameshift deletion	Olfr390:NM_146347:exon1:c.903delA:p.V304Cfs*8	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	124	30	8	0.266666667	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	1	0.9337251	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	35	0	0	NA	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	1	7.48E-05	CTT	synonymous	NA	NA	NA	NA
M8	chr11	75658442	12A2p6	cell line	sgMsh2	75658442	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	75	203	57	0.280788177	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon4:c.G333A:p.K111K,Myo1c:NM_001080775:exon4:c.G381A:p.K127K,Myo1c:NM_001370611:exon4:c.G438A:p.K146K,Myo1c:NM_008659:exon4:c.G333A:p.K111K"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9798415	AGA	synonymous	NA	NA	NA	NA
M8	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	216	146	30	0.205479452	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	CAC	synonymous	NA	NA	NA	NA
M8	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	86	33	4	0.121212121	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.115	37	8	3	0.375	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.55036705	2	0.7524894	GTA	synonymous	NA	NA	NA	NA
M8	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	143	15	5	0.333333333	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	ATG	synonymous	NA	NA	NA	NA
M8	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	66	24	5	0.208333333	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9189083	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	77827828	12A2p6	cell line	sgMsh2	77827828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	72	176	37	0.210227273	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon15:c.C1761A:p.H587Q,Myo18a:NM_011586:exon16:c.C2766A:p.H922Q,Myo18a:NM_001291212:exon17:c.C2802A:p.H934Q,Myo18a:NM_001291213:exon17:c.C2910A:p.H970Q,Myo18a:NM_001291215:exon18:c.C1827A:p.H609Q"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	63	163	46	0.282208589	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	86	22	3	0.136363636	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr11	78399131	12A2p6	cell line	sgMsh2	78399131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	67	0	0	NA	exonic	Slc13a2	synonymous SNV	Slc13a2:NM_022411:exon10:c.A1356G:p.S452S	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9884636	CTG	synonymous	NA	NA	NA	NA
M8	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	91	103	13	0.126213592	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	CTA	synonymous	NA	NA	NA	NA
M8	chr11	80132505	12A2p6	cell line	sgMsh2	80132505	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	233	8	2	0.25	exonic	Atad5	nonsynonymous SNV	Atad5:NM_001029856:exon21:c.A4442G:p.Q1481R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999931	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	80323373	12A2p6	cell line	sgMsh2	80323373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	38	0	0	NA	exonic	Rhbdl3	synonymous SNV	Rhbdl3:NM_139228:exon4:c.T309C:p.R103R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	GTT	synonymous	NA	NA	NA	NA
M8	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	175	96	17	0.177083333	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	82812404	12A2p6	cell line	sgMsh2	82812404	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	52	19	5	0.263157895	exonic	Rffl	nonsynonymous SNV	"Rffl:NM_001007465:exon3:c.A587G:p.Q196R,Rffl:NM_001164571:exon3:c.A590G:p.Q197R,Rffl:NM_026097:exon3:c.A587G:p.Q196R,Rffl:NM_001164569:exon4:c.A692G:p.Q231R,Rffl:NM_001164570:exon4:c.A629G:p.Q210R"	11qC	chr11-69590981-82929860	4	4	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	83421910	12A2p6	cell line	sgMsh2	83421910	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	80	0	0	NA	exonic	Gas2l2	nonsynonymous SNV	Gas2l2:NM_001013759:exon6:c.T2575A:p.W859R	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	210	98	22	0.224489796	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr11	84249560	12A2p6	cell line	sgMsh2	84249560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	234	1	0	0	exonic	Acaca	nonsynonymous SNV	Acaca:NM_133360:exon13:c.T1859C:p.V620A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	190	103	25	0.242718447	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	85039230	12A2p6	cell line	sgMsh2	85039230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	95	82	16	0.195121951	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon15:c.T1720C:p.Y574H	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	85559146	12A2p6	cell line	sgMsh2	85559146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	85	30	8	0.266666667	exonic	Bcas3	nonsynonymous SNV	"Bcas3:NM_001166643:exon19:c.G2004T:p.Q668H,Bcas3:NM_001166642:exon20:c.G2004T:p.Q668H,Bcas3:NM_138681:exon21:c.G2049T:p.Q683H"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	AGT	nonsynonymous	GCAGT	10	GCAGTGCAGT	NA
M8	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	306	7	1	0.142857143	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	258	6	2	0.333333333	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999977	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	132	49	9	0.183673469	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	CAA	synonymous	CCT	8	CCTCCTCC	NA
M8	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	71	13	2	0.153846154	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.512080647	2	0.9855409	CCA	synonymous	NA	NA	NA	NA
M8	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	263	17	1	0.058823529	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.7640336	CTA	synonymous	NA	NA	NA	NA
M8	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	110	123	41	0.333333333	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	122	59	16	0.271186441	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	33	1	1	1	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9622545	GGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	195	24	7	0.291666667	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999645	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	114	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988211	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	52	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.698726864	2	7.65E-06	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	94443262	12A2p6	cell line	sgMsh2	94443262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	59	1	0	0	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon11:c.T2552C:p.L851P,Cacna1g:NM_001177888:exon11:c.T2552C:p.L851P,Cacna1g:NM_001177890:exon11:c.T2501C:p.L834P,Cacna1g:NM_009783:exon11:c.T2552C:p.L851P"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9352696	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	96	2	0	0	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	94967950	12A2p6	cell line	sgMsh2	94967950	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	136	0	0	NA	exonic	Hils1	nonsynonymous SNV	Hils1:NM_018792:exon1:c.A70G:p.T24A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	117	55	11	0.2	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	97034963	12A2p6	cell line	sgMsh2	97034963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	54	0	0	NA	exonic	Lrrc46	synonymous SNV	Lrrc46:NM_027026:exon8:c.A672G:p.A224A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844305	GTG	synonymous	NA	NA	NA	NA
M8	chr11	97531909	12A2p6	cell line	sgMsh2	97531909	T	G	SNV	Mutect2;Strelka2	2	0.192	26	0	0	NA	exonic	Srcin1	nonsynonymous SNV	Srcin1:NM_018873:exon12:c.A2198C:p.E733A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9137007	CTC	nonsynonymous	GCC	14	GCCGCCGCGCCGCC	NA
M8	chr11	97690145	12A2p6	cell line	sgMsh2	97690145	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.383	65	63	8	0.126984127	exonic	Pcgf2	nonsynonymous SNV	"Pcgf2:NM_001163308:exon10:c.G871T:p.G291C,Pcgf2:NM_001163307:exon11:c.G871T:p.G291C,Pcgf2:NM_009545:exon13:c.G871T:p.G291C"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	147	1	0	0	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	86	728	158	0.217032967	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8743704	ATG	synonymous	NA	NA	NA	NA
M8	chr11	97994461	12A2p6	cell line	sgMsh2	97994461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	90	0	0	NA	exonic	Arl5c	synonymous SNV	Arl5c:NM_207231:exon3:c.C132A:p.T44T	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	AGG	synonymous	NA	NA	NA	NA
M8	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	57	8	3	0.375	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.1333	45	58	8	0.137931034	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.637947198	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M8	chr11	98701579	12A2p6	cell line	sgMsh2	98701580	TG	GA	DBS	Mutect2;Vardict	2	0.288	46	0	0	NA	exonic	Csf3	nonframeshift substitution	Csf3:NM_009971:exon2:c.116_117GA:p.L39R	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	143	53	13	0.245283019	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	AAG	synonymous	NA	NA	NA	NA
M8	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	161	2	0	0	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	CAT	synonymous	NA	NA	NA	NA
M8	chr11	98892314	12A2p6	cell line	sgMsh2	98892314	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	62	21	3	0.142857143	exonic	Wipf2	frameshift deletion	Wipf2:NM_197940:exon5:c.565delC:p.T191Pfs*39	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr11	99009888	12A2p6	cell line	sgMsh2	99009888	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	293	87	0	0	exonic	Top2a	frameshift deletion	Top2a:NM_011623:exon15:c.1745delA:p.N582Ifs*4	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr11	99815369	12A2p6	cell line	sgMsh2	99815369	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.235	197	0	0	NA	exonic	Gm11564	synonymous SNV	Gm11564:NM_001100614:exon1:c.T234C:p.S78S	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	AAC	synonymous	NA	NA	NA	NA
M8	chr11	100550280	12A2p6	cell line	sgMsh2	100550280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	121	3	0	0	exonic	Ttc25	synonymous SNV	"Ttc25:NM_001363174:exon3:c.G336A:p.R112R,Ttc25:NM_028918:exon3:c.G336A:p.R112R"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	GGG	synonymous	NA	NA	NA	NA
M8	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	127	54	15	0.277777778	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	125	18	4	0.222222222	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	129	224	72	0.321428571	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9756467	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	44	3	0	0	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr11	102480410	12A2p6	cell line	sgMsh2	102480410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	117	55	20	0.363636364	exonic	Gpatch8	synonymous SNV	Gpatch8:NM_001159492:exon8:c.T2301C:p.G767G	11qD	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	CAC	synonymous	C	5	CCCCC	NA
M8	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	88	1	0	0	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	101	35	5	0.142857143	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	CCC	nonsynonymous	C	5	CCCCC	NA
M8	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	80	20	4	0.2	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	GTC	synonymous	NA	NA	NA	NA
M8	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	100	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	TTC	synonymous	NA	NA	NA	NA
M8	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	59	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	137	5	0	0	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	218	252	43	0.170634921	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	123	30	8	0.266666667	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.999069	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr11	106991295	12A2p6	cell line	sgMsh2	106991295	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	250	85	0	0	exonic	Kpna2	nonsynonymous SNV	Kpna2:NM_010655:exon7:c.A704C:p.N235T	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9999151	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	64	102	23	0.225490196	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9293131	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M8	chr11	107663635	12A2p6	cell line	sgMsh2	107663635	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	164	53	6	0.113207547	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon26:c.T3661G:p.F1221V,Helz:NM_001368755:exon27:c.T3658G:p.F1220V"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	93	37	8	0.216216216	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	ATA	synonymous	ATAA	8	ATAAATAA	NA
M8	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	164	39	12	0.307692308	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.251	262	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	110296589	12A2p6	cell line	sgMsh2	110296589	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	56	58	0	0	exonic	Abca5	frameshift deletion	Abca5:NM_147219:exon20:c.2643delT:p.L882Sfs*20	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	106	37	1	0.027027027	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	1	0.5077465	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	139	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	CTT	synonymous	NA	NA	NA	NA
M8	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	404	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	5.21E-09	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr11	115606036	12A2p6	cell line	sgMsh2	115606036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	153	200	46	0.23	exonic	Mrps7	nonsynonymous SNV	Mrps7:NM_025305:exon4:c.A406G:p.T136A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	108	82	11	0.134146341	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9905724	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	36	2	0	0	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.966695	GTT	synonymous	NA	NA	NA	NA
M8	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	78	28	4	0.142857143	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr11	116007787	12A2p6	cell line	sgMsh2	116007787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	126	82	14	0.170731707	exonic	Itgb4	nonsynonymous SNV	"Itgb4:NM_133663:exon38:c.C5041T:p.L1681F,Itgb4:NM_001005608:exon39:c.C5191T:p.L1731F"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	131	15	4	0.266666667	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9720337	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	166	43	0.259036145	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	153	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	44	41	10	0.243902439	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.8799645	CAC	synonymous	NA	NA	NA	NA
M8	chr11	116446851	12A2p6	cell line	sgMsh2	116446851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	96	0	0	NA	exonic	Qrich2	nonsynonymous SNV	Qrich2:NM_001033267:exon6:c.T575C:p.M192T	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	132	2	1	0.5	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	116923396	12A2p6	cell line	sgMsh2	116923396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	106	0	0	NA	exonic	Mgat5b	nonsynonymous SNV	Mgat5b:NM_172948:exon2:c.G125A:p.G42E	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983345	GGA	nonsynonymous	NA	NA	NA	NA
M8	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	104	93	19	0.204301075	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	GTG	synonymous	NA	NA	NA	NA
M8	chr11	117290585	12A2p6	cell line	sgMsh2	117290585	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	26	159	42	0.264150943	exonic	Septin9	synonymous SNV	"Septin9:NM_001113487:exon2:c.T243A:p.P81P,Septin9:NM_001113486:exon3:c.T264A:p.P88P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9495799	CTT	synonymous	NA	NA	NA	NA
M8	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	88	36	12	0.333333333	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr11	117775602	12A2p6	cell line	sgMsh2	117775602	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.191	48	49	8	0.163265306	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon8:c.T875C:p.L292P	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.940545	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr11	119081058	12A2p6	cell line	sgMsh2	119081058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	33	47	15	0.319148936	exonic	Cbx4	nonsynonymous SNV	Cbx4:NM_007625:exon5:c.C1490T:p.A497V	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9622545	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	82	35	5	0.142857143	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	119507304	12A2p6	cell line	sgMsh2	119507304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	29	29	6	0.206896552	exonic	Endov	synonymous SNV	"Endov:NM_177394:exon8:c.A645C:p.S215S,Endov:NM_001164636:exon9:c.A894C:p.S298S"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9554425	CAG	synonymous	NA	NA	NA	NA
M8	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	130	46	10	0.217391304	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	61	37	13	0.351351351	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	TAC	nonsynonymous	C	5	CCCCC	NA
M8	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	161	904	201	0.222345133	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	CTG	synonymous	NA	NA	NA	NA
M8	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	83	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	GTG	synonymous	NA	NA	NA	NA
M8	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	65	232	54	0.232758621	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	87	133	43	0.323308271	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	120861211	12A2p6	cell line	sgMsh2	120861211	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	92	10	1	0.1	exonic	Ccdc57	nonsynonymous SNV	Ccdc57:NM_027745:exon17:c.A2543G:p.H848R	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr11	120955828	12A2p6	cell line	sgMsh2	120955828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	89	237	53	0.223628692	exonic	Slc16a3	nonsynonymous SNV	"Slc16a3:NM_001038654:exon3:c.T253C:p.F85L,Slc16a3:NM_001038653:exon4:c.T253C:p.F85L,Slc16a3:NM_030696:exon4:c.T253C:p.F85L"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9930943	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	105	17	3	0.176470588	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83350706-121956668	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	188	55	8	0.145454545	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M8	chr12	3734955	12A2p6	cell line	sgMsh2	3734955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	139	48	7	0.145833333	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001355528:exon11:c.A1096G:p.S366G,Dtnb:NM_001162465:exon12:c.A1186G:p.S396G,Dtnb:NM_001374710:exon12:c.A1186G:p.S396G,Dtnb:NM_007886:exon12:c.A1186G:p.S396G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	166	7	0	0	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.555152851	2	0.999985	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	147	118	21	0.177966102	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9992454	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	224	33	7	0.212121212	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9851729	GTT	synonymous	TTA	8	TTATTATT	NA
M8	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	184	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999429	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	143	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631725658	2	0.9983131	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M8	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	131	833	112	0.134453782	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.593439254	2	0.9991459	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	148	276	46	0.166666667	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.588653454	2	0.9997774	GAG	synonymous	NA	NA	NA	NA
M8	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.139	89	1493	133	0.089082384	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.665226261	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	300	55	3	0.054545455	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	2	0.9999985	CTA	synonymous	NA	NA	NA	NA
M8	chr12	9024291	12A2p6	cell line	sgMsh2	9024291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	205	32	5	0.15625	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon24:c.T2921C:p.M974T,Wdr35:NM_172470:exon25:c.T2954C:p.M985T"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.416364638	3	0.9283975	ATG	nonsynonymous	A	5	AAAAA	NA
M8	chr12	12340718	12A2p6	cell line	sgMsh2	12340718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	322	0	0	NA	exonic	Cyria	synonymous SNV	"Cyria:NM_001146119:exon3:c.G30T:p.R10R,Cyria:NM_001364432:exon4:c.G30T:p.R10R,Cyria:NM_029758:exon4:c.G30T:p.R10R"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.9966656	GGG	synonymous	NA	NA	NA	NA
M8	chr12	12372809	12A2p6	cell line	sgMsh2	12372809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	362	0	0	NA	exonic	Cyria	stoploss	"Cyria:NM_001146119:exon12:c.A971G:p.X324W,Cyria:NM_001364432:exon13:c.A971G:p.X324W,Cyria:NM_029758:exon13:c.A971G:p.X324W"	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999999	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	203	42	6	0.142857143	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.674797862	2	0.9994094	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr12	16926990	12A2p6	cell line	sgMsh2	16926990	A	G	SNV	Mutect2;MuSe;Vardict	3	0.179	45	267	50	0.187265918	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon2:c.A193G:p.N65D	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.8803985	AAA	nonsynonymous	AAAAAT	13	AAAAATAAAAATA	NA
M8	chr12	16950664	12A2p6	cell line	sgMsh2	16950664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	190	672	89	0.132440476	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon7:c.A961G:p.I321V	12qA1.1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.9147246	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	342	62	11	0.177419355	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.607796656	2	3.02E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M8	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	341	109	23	0.211009174	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9991198	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	273	336	6	0.017857143	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	237	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.865201	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	499	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9970431	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	336	1	1	1	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9862169	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	35105240	12A2p6	cell line	sgMsh2	35105240	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	246	116	20	0.172413793	exonic	Snx13	synonymous SNV	Snx13:NM_001014973:exon13:c.A1302G:p.Q434Q	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9859193	AAA	synonymous	ACCA	9	ACCAACCAA	NA
M8	chr12	35112454	12A2p6	cell line	sgMsh2	35112454	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	451	144	27	0.1875	exonic	Snx13	nonsynonymous SNV	Snx13:NM_001014973:exon17:c.G1658T:p.S553I	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr12	37414018	12A2p6	cell line	sgMsh2	37414018	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	214	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon11:c.C1096G:p.L366V	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.177074616	3	1	TCT	nonsynonymous	TCT	9	TCTTCTTCT	NA
M8	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	285	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626939857	2	0.9999997	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr12	38173837	12A2p6	cell line	sgMsh2	38173837	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	304	0	0	NA	exonic	Dgkb	frameshift deletion	"Dgkb:NM_001361688:exon14:c.1254delT:p.L419Cfs*12,Dgkb:NM_178681:exon14:c.1254delT:p.L419Cfs*12,Dgkb:NM_001361686:exon15:c.1275delT:p.L426Cfs*12"	12qA3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	285	1	0	0	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708298465	2	0.9998087	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr12	44584900	12A2p6	cell line	sgMsh2	44584900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	231	0	0	NA	exonic	Nrcam	nonsynonymous SNV	Nrcam:NM_176930:exon28:c.A3235G:p.M1079V	12qB2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9405657	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	307	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.9270366	CTG	synonymous	ACCT	8	ACCTACCT	NA
M8	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	144	61	7	0.114754098	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9356572	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	249	170	19	0.111764706	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9964035	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	51602660	12A2p6	cell line	sgMsh2	51602660	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	298	0	0	NA	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon9:c.G753T:p.K251N,Coch:NM_001198835:exon10:c.G753T:p.K251N"	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.9815136	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	260	282	46	0.163120567	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.531223849	2	0.9999999	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M8	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	115	73	7	0.095890411	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	1	0.5449791	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	53025765	12A2p6	cell line	sgMsh2	53025765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	210	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon9:c.T2915C:p.L972P	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9706434	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	216	286	73	0.255244755	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M8	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	276	31	0	0	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M8	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	220	77	4	0.051948052	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.921171	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr12	59206057	12A2p6	cell line	sgMsh2	59206057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	193	60	10	0.166666667	exonic	Fbxo33	nonsynonymous SNV	Fbxo33:NM_001033156:exon2:c.A655T:p.S219C	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.945702	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	61840469	12A2p6	cell line	sgMsh2	61840469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	208	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon3:c.A1042G:p.T348A,Lrfn5:NM_178714:exon3:c.A1042G:p.T348A"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	1	0.9998243	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	246	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8651755	CTA	synonymous	NA	NA	NA	NA
M8	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	251	43	8	0.186046512	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.626939857	2	0.9999975	AAG	synonymous	NA	NA	NA	NA
M8	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	308	131	11	0.083969466	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.488151645	2	0.9999297	CAA	nonsynonymous	T	5	TTTTT	NA
M8	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	180	154	14	0.090909091	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	171	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.7638648	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	171	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998997	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	248	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9902637	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	389	122	14	0.114754098	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	171	1361	219	0.160911095	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9866439	GGC	synonymous	NA	NA	NA	NA
M8	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.163	127	175	20	0.114285714	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.5797291	CCA	nonsynonymous	NA	NA	NA	NA
M8	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	300	791	109	0.137800253	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.7475206	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	258	673	115	0.170876672	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.564724452	2	2.17E-08	GTA	synonymous	NA	NA	NA	NA
M8	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	326	52	5	0.096153846	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.943291	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M8	chr12	72574334	12A2p6	cell line	sgMsh2	72574334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	367	47	11	0.234042553	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon9:c.A2927G:p.Y976C	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.19E-08	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	73545433	12A2p6	cell line	sgMsh2	73545433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	148	0	0	NA	exonic	Tmem30b	nonsynonymous SNV	Tmem30b:NM_178715:exon1:c.A907G:p.I303V	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9928555	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	224	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8646747	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	230	41	5	0.12195122	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	2	0.5616886	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	350	30	6	0.2	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.9931809	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.155	274	76	3	0.039473684	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	170	89	13	0.146067416	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.6945775	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	85	71	12	0.169014085	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	212	203	22	0.108374384	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.804014474	2	0.5899854	CTC	nonsynonymous	C	5	CCCCC	NA
M8	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	165	31	2	0.064516129	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	2	0.9921614	TCG	nonsynonymous	NA	NA	NA	NA
M8	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	171	29	5	0.172413793	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.8759214	AGA	synonymous	NA	NA	NA	NA
M8	chr12	79276313	12A2p6	cell line	sgMsh2	79276313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	128	43	7	0.162790698	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon15:c.T2658C:p.G886G	12qC3	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.689155263	2	0.9711524	TAC	synonymous	C	5	CCCCC	NA
M8	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	309	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9959512	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	309	4	0	0	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9702974	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	81419746	12A2p6	cell line	sgMsh2	81419746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	417	0	0	NA	exonic	Adam4	synonymous SNV	Adam4:NM_009620:exon1:c.T2100C:p.T700T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	1	0.9902127	GAG	synonymous	NA	NA	NA	NA
M8	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	277	36	4	0.111111111	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.8925113	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	177	199	27	0.135678392	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9275108	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	388	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9994269	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	307	1	0	0	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9968317	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr12	84174071	12A2p6	cell line	sgMsh2	84174071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	111	43	8	0.186046512	exonic	Mideas	synonymous SNV	"Mideas:NM_001163501:exon2:c.A108G:p.P36P,Mideas:NM_001163502:exon2:c.A108G:p.P36P"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	1	0.5590042	GTG	synonymous	NA	NA	NA	NA
M8	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	386	117	24	0.205128205	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.984732	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	85269374	12A2p6	cell line	sgMsh2	85269374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	406	52	6	0.115384615	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon2:c.T37C:p.L13L,Mlh3:NM_175337:exon2:c.T37C:p.L13L"	12qD1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.665226261	2	2.08E-08	AAC	synonymous	NA	NA	NA	NA
M8	chr12	85933463	12A2p6	cell line	sgMsh2	85933463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	135	35	4	0.114285714	exonic	Ttll5	synonymous SNV	"Ttll5:NM_001364628:exon26:c.T2304C:p.A768A,Ttll5:NM_001081423:exon27:c.T2820C:p.A940A,Ttll5:NM_001347395:exon27:c.T2820C:p.A940A,Ttll5:NM_001364624:exon27:c.T2820C:p.A940A,Ttll5:NM_001364625:exon27:c.T2820C:p.A940A,Ttll5:NM_001364626:exon27:c.T2820C:p.A940A,Ttll5:NM_001364627:exon27:c.T2526C:p.A842A,Ttll5:NM_001364630:exon27:c.T1053C:p.A351A"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9990454	CTG	synonymous	NA	NA	NA	NA
M8	chr12	86883286	12A2p6	cell line	sgMsh2	86883286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	77	303	45	0.148514851	exonic	Irf2bpl	synonymous SNV	Irf2bpl:NM_145836:exon1:c.G612T:p.S204S	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.497723246	2	0.9884049	CCG	synonymous	NA	NA	NA	NA
M8	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	93	120	12	0.1	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.684369463	2	0.898553	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	119	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.579081853	2	0.9987896	CTT	synonymous	NA	NA	NA	NA
M8	chr12	87356619	12A2p6	cell line	sgMsh2	87356619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	282	389	49	0.12596401	exonic	Sptlc2	synonymous SNV	Sptlc2:NM_011479:exon3:c.T405C:p.P135P	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9999946	TAG	synonymous	NA	NA	NA	NA
M8	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	142	99	12	0.121212121	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.8177747	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	138	34	9	0.264705882	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9934039	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	434	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.9539041	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	218	33	6	0.181818182	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9723216	ATG	synonymous	NA	NA	NA	NA
M8	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	266	90	10	0.111111111	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9989171	TGA	synonymous	NA	NA	NA	NA
M8	chr12	98798930	12A2p6	cell line	sgMsh2	98798930	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	195	4	0	0	exonic	Eml5	nonsynonymous SNV	Eml5:NM_001081191:exon36:c.G4759T:p.G1587C	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8912756	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	120	31	3	0.096774194	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	TAG	synonymous	NA	NA	NA	NA
M8	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	57	31	1	0.032258065	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	186	29	1	0.034482759	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	2	0.9983684	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	121	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.497723246	2	0.9978623	AAC	synonymous	NA	NA	NA	NA
M8	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	131	10	2	0.2	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.6364564	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.165	382	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	NA	NA	CCA	frameshift	NA	NA	NA	1
M8	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	154	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M8	chr12	101885471	12A2p6	cell line	sgMsh2	101885471	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.17	238	107	0	0	exonic	Trip11	frameshift insertion	Trip11:NM_028446:exon11:c.2332dupA:p.S778Kfs*2	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	NA	NA	ACT	frameshift	T	5	TTTTT	1
M8	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	177	138	27	0.195652174	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.7598092	TTC	synonymous	NA	NA	NA	NA
M8	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	84	98	16	0.163265306	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.5370324	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.163	322	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.9733062	CGT	nonsynonymous	NA	NA	NA	NA
M8	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	303	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr12	103424107	12A2p6	cell line	sgMsh2	103424107	T	-	Deletion	Strelka2;Vardict	2	0.1574	216	313	15	0.047923323	exonic	Ddx24	frameshift deletion	"Ddx24:NM_001159502:exon2:c.624delA:p.K208Nfs*48,Ddx24:NM_001364162:exon2:c.486delA:p.K162Nfs*48,Ddx24:NM_001364163:exon2:c.486delA:p.K162Nfs*48,Ddx24:NM_020494:exon2:c.486delA:p.K162Nfs*48"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M8	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	256	188	28	0.14893617	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9999806	GAG	synonymous	NA	NA	NA	NA
M8	chr12	103998208	12A2p6	cell line	sgMsh2	103998208	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	256	0	0	NA	exonic	Serpina9	synonymous SNV	"Serpina9:NM_001361910:exon4:c.C969T:p.I323I,Serpina9:NM_001361912:exon4:c.C969T:p.I323I,Serpina9:NM_027997:exon4:c.C969T:p.I323I"	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	2	0.7594805	GGA	synonymous	NA	NA	NA	NA
M8	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.145	149	124	0	0	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	NA	NA	TGT	frameshift	T	5	TTTTT	1
M8	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	178	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9271364	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	108	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.674797862	2	0.9571979	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	108	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.7561386	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	83	16	3	0.1875	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.6847815	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr12	111485500	12A2p6	cell line	sgMsh2	111485500	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	38	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A271C:p.S91R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	150	37	4	0.108108108	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.507294846	2	0.9996473	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	119	49	9	0.183673469	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.459436842	2	0.9559344	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	95	44	7	0.159090909	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	1	0.5537194	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	112606974	12A2p6	cell line	sgMsh2	112606974	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	131	167	10	0.05988024	exonic	Inf2	nonsynonymous SNV	"Inf2:NM_001374199:exon12:c.T2147C:p.I716T,Inf2:NM_198411:exon12:c.T2147C:p.I716T"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9984353	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	168	57	17	0.298245614	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9984966	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	213	38	5	0.131578947	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999837	AGT	synonymous	NA	NA	NA	NA
M8	chr12	113112206	12A2p6	cell line	sgMsh2	113112206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	244	190	29	0.152631579	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001346696:exon2:c.T89C:p.L30P,Mta1:NM_001364620:exon2:c.T89C:p.L30P,Mta1:NM_001364621:exon2:c.T89C:p.L30P,Mta1:NM_001364622:exon2:c.T89C:p.L30P,Mta1:NM_001364623:exon2:c.T89C:p.L30P,Mta1:NM_054081:exon2:c.T89C:p.L30P"	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.999926	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	411	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.9999162	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	246	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.973554	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	116233327	12A2p6	cell line	sgMsh2	116233327	T	-	Deletion	Strelka2;Vardict	2	0.1515	231	41	1	0.024390244	exonic	Wdr60	frameshift deletion	Wdr60:NM_146039:exon9:c.1409delA:p.N470Ifs*22	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.725048766	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M8	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	259	246	43	0.174796748	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	2	0.9999353	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	201	299	4	0.013377926	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9332774	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M8	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	132	6	1	0.166666667	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.698726864	2	0.9657084	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	315	8	0	0	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.670012061	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	171	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.8017773	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	442	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9999936	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr12	118041010	12A2p6	cell line	sgMsh2	118041010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	149	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon40:c.A6575C:p.D2192A	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.8652193	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	180	9	0	0	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9765192	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	282	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.5058652	GGT	nonsynonymous	NA	NA	NA	NA
M8	chr13	3595498	12A2p6	cell line	sgMsh2	3595498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	60	107	24	0.224299065	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon7:c.T350C:p.L117S,Tasor2:NM_134063:exon7:c.T350C:p.L117S"	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.583867654	2	0.9173564	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr13	12421074	12A2p6	cell line	sgMsh2	12421074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	142	154	24	0.155844156	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon25:c.A3492G:p.E1164E	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.673784	AAC	synonymous	NA	NA	NA	NA
M8	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	184	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999429	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr13	21674653	12A2p6	cell line	sgMsh2	21674653	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	221	0	0	NA	exonic	Olfr1360	nonsynonymous SNV	Olfr1360:NM_146543:exon1:c.G290A:p.C97Y	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	463	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.33E-09	GGC	synonymous	NA	NA	NA	NA
M8	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	294	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.532	388	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	9.41E-09	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	87	440	87	0.197727273	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	GCA	synonymous	NA	NA	NA	NA
M8	chr13	34044462	12A2p6	cell line	sgMsh2	34044462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	176	21	3	0.142857143	exonic	Bphl	nonsynonymous SNV	Bphl:NM_026512:exon2:c.T146C:p.V49A	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999192	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	34883322	12A2p6	cell line	sgMsh2	34883322	A	-	Deletion	Strelka2;Vardict	2	0.233	103	100	8	0.08	exonic	Prpf4b	frameshift deletion	Prpf4b:NM_013830:exon2:c.133delA:p.K47Rfs*56	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M8	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	90	107	34	0.317757009	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	134	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	190	44	13	0.295454545	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	0.9999742	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	45567073	12A2p6	cell line	sgMsh2	45567073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	88	10	0	0	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon6:c.A1345G:p.T449A,Atxn1:NM_001199305:exon7:c.A1345G:p.T449A,Atxn1:NM_009124:exon7:c.A1345G:p.T449A"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr13	46609656	12A2p6	cell line	sgMsh2	46609656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	94	0	0	NA	exonic	Cap2	stopgain	Cap2:NM_026056:exon5:c.C361T:p.R121X	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	CCG	nonsynonymous	GA	8	GAGAGAGA	NA
M8	chr13	46717107	12A2p6	cell line	sgMsh2	46717107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	86	139	29	0.208633094	exonic	Nup153	nonsynonymous SNV	Nup153:NM_175749:exon2:c.A331G:p.T111A	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.670012061	2	0.09815491	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	188	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	95	1	0	0	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	GTA	synonymous	NA	NA	NA	NA
M8	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	181	16	2	0.125	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999349	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	105	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	41	11	1	0.090909091	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	9.92E-09	AAG	synonymous	NA	NA	NA	NA
M8	chr13	52611085	12A2p6	cell line	sgMsh2	52611085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	66	7	2	0.285714286	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon2:c.A247G:p.S83G,Syk:NM_011518:exon2:c.A247G:p.S83G"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.990676	CAG	nonsynonymous	CCAGC	10	CCAGCCCAGC	NA
M8	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.186	87	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	NA	NA	TCC	frameshift	NA	NA	NA	-1
M8	chr13	54463530	12A2p6	cell line	sgMsh2	54463530	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	158	80	21	0.2625	exonic	Thoc3	synonymous SNV	Thoc3:NM_028597:exon5:c.G834A:p.G278G	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	TCC	synonymous	NA	NA	NA	NA
M8	chr13	54539774	12A2p6	cell line	sgMsh2	54539774	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	133	42	12	0.285714286	exonic	Simc1	nonsynonymous SNV	Simc1:NM_176987:exon6:c.A3361C:p.T1121P	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	54661063	12A2p6	cell line	sgMsh2	54661063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	114	190	48	0.252631579	exonic	Faf2	nonsynonymous SNV	Faf2:NM_178397:exon11:c.A1265C:p.N422T	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988211	AAC	nonsynonymous	C	5	CCCCC	NA
M8	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	164	70	14	0.2	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	AAC	synonymous	NA	NA	NA	NA
M8	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	141	12	3	0.25	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	56176188	12A2p6	cell line	sgMsh2	56176188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	85	0	0	NA	exonic	Tifab	nonsynonymous SNV	"Tifab:NM_001168615:exon3:c.A441C:p.E147D,Tifab:NM_145976:exon3:c.A441C:p.E147D"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	1	0.6469788	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M8	chr13	56629694	12A2p6	cell line	sgMsh2	56629694	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	102	2	0	0	exonic	Tgfbi	frameshift deletion	Tgfbi:NM_009369:exon8:c.990delG:p.G332Afs*78	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8	chr13	58576765	12A2p6	cell line	sgMsh2	58576765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	112	0	0	NA	exonic	Slc28a3	nonsynonymous SNV	Slc28a3:NM_022317:exon6:c.A674G:p.Y225C	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	244	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999957	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	105	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	CTA	synonymous	NA	NA	NA	NA
M8	chr13	64312589	12A2p6	cell line	sgMsh2	64312589	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	14	42	13	0.30952381	exonic	Prxl2c	synonymous SNV	Prxl2c:NM_025370:exon1:c.C96A:p.A32A	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9180531	CGG	synonymous	NA	NA	NA	NA
M8	chr13	64921401	12A2p6	cell line	sgMsh2	64921401	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	203	0	0	NA	exonic	Spata31	synonymous SNV	Spata31:NM_030047:exon3:c.C1362T:p.T454T	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	CCC	synonymous	NA	NA	NA	NA
M8	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	183	40	5	0.125	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAG	frameshift	NA	NA	NA	-1
M8	chr13	69503700	12A2p6	cell line	sgMsh2	69503700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	138	75	15	0.2	exonic	Tent4a	nonsynonymous SNV	"Tent4a:NM_001169131:exon9:c.T872C:p.V291A,Tent4a:NM_198600:exon9:c.T872C:p.V291A"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	77	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9941856	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	55	3	0	0	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	GAG	synonymous	NA	NA	NA	NA
M8	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	179	124	31	0.25	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8889255	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	137	2	1	0.5	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	85	3	0	0	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	276	14	3	0.214285714	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	CTT	synonymous	NA	NA	NA	NA
M8	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	80	55	15	0.272727273	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	1	0.5384201	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr13	95632121	12A2p6	cell line	sgMsh2	95632121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	157	23	8	0.347826087	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon33:c.A4270G:p.T1424A	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9997258	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	95701444	12A2p6	cell line	sgMsh2	95701444	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	294	0	0	NA	exonic	F2rl2	synonymous SNV	F2rl2:NM_010170:exon2:c.C996A:p.T332T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	CCG	synonymous	NA	NA	NA	NA
M8	chr13	96030575	12A2p6	cell line	sgMsh2	96030575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	101	0	0	NA	exonic	Sv2c	nonsynonymous SNV	Sv2c:NM_029210:exon4:c.A821C:p.K274T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	146	119	32	0.268907563	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	ATT	synonymous	NA	NA	NA	NA
M8	chr13	110260597	12A2p6	cell line	sgMsh2	110260597	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	104	0	0	NA	exonic	Rab3c	nonsynonymous SNV	"Rab3c:NM_001360099:exon2:c.C128A:p.S43Y,Rab3c:NM_023852:exon2:c.C134A:p.S45Y"	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	95	67	19	0.28358209	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr13	114977646	12A2p6	cell line	sgMsh2	114977646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	153	83	13	0.156626506	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon21:c.A2722G:p.T908A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9995189	GTA	nonsynonymous	GATGT	10	GATGTGATGT	NA
M8	chr13	115001595	12A2p6	cell line	sgMsh2	115001595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	252	67	13	0.194029851	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon11:c.A1253G:p.N418S	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999997	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	172	61	22	0.360655738	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999904	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr13	116926561	12A2p6	cell line	sgMsh2	116926561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	132	73	19	0.260273973	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon6:c.T301C:p.C101R	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9940243	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	146	736	259	0.351902174	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	CCT	synonymous	NA	NA	NA	NA
M8	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	50	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	CAG	synonymous	NA	NA	NA	NA
M8	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	79	43	17	0.395348837	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	TTA	synonymous	NA	NA	NA	NA
M8	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	118	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	110	5	2	0.4	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	20588100	12A2p6	cell line	sgMsh2	20588100	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	118	8	5	0.625	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon8:c.T800G:p.L267R	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	21634556	12A2p6	cell line	sgMsh2	21634556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	125	27	3	0.111111111	exonic	Kat6b	synonymous SNV	"Kat6b:NM_001205241:exon11:c.T1581C:p.Y527Y,Kat6b:NM_017479:exon11:c.T1581C:p.Y527Y"	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	ATT	synonymous	NA	NA	NA	NA
M8	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	60	37	11	0.297297297	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	162	104	40	0.384615385	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr14	27912962	12A2p6	cell line	sgMsh2	27912962	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	122	0	0	NA	exonic	Erc2	synonymous SNV	"Erc2:NM_177814:exon6:c.T1455C:p.A485A,Erc2:NM_001347497:exon7:c.T1479C:p.A493A"	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	CTG	synonymous	NA	NA	NA	NA
M8	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	115	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	GAA	nonsynonymous	A	5	AAAAA	NA
M8	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.391	69	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M8	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	71	735	220	0.299319728	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	94	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	CAA	synonymous	NA	NA	NA	NA
M8	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	178	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	118	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	79	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	AGC	synonymous	NA	NA	NA	NA
M8	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	94	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	CAG	synonymous	NA	NA	NA	NA
M8	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	73	17	1	0.058823529	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	47	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9790402	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.4062	32	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M8	chr14	34342161	12A2p6	cell line	sgMsh2	34342161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	218	356	99	0.278089888	exonic	Glud1	nonsynonymous SNV	Glud1:NM_008133:exon12:c.A1537G:p.T513A	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	67	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	83	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr14	39472476	12A2p6	cell line	sgMsh2	39472476	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	28	0	0	NA	exonic	Nrg3	nonsynonymous SNV	"Nrg3:NM_001190187:exon1:c.G325T:p.G109C,Nrg3:NM_001190188:exon1:c.G325T:p.G109C,Nrg3:NM_008734:exon1:c.G325T:p.G109C"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9535644	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	63	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	43819394	12A2p6	cell line	sgMsh2	43819394	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	256	0	0	NA	exonic	Ear1	nonsynonymous SNV	Ear1:NM_007894:exon2:c.C16A:p.L6I	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999975	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr14	45614188	12A2p6	cell line	sgMsh2	45614188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	158	31	7	0.225806452	exonic	Ddhd1	nonsynonymous SNV	"Ddhd1:NM_001039106:exon6:c.A1430G:p.Y477C,Ddhd1:NM_176845:exon6:c.A1430G:p.Y477C,Ddhd1:NM_001042719:exon7:c.A1532G:p.Y511C,Ddhd1:NM_001284399:exon8:c.A419G:p.Y140C"	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	134	29	11	0.379310345	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GAC	synonymous	NA	NA	NA	NA
M8	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	96	29	13	0.448275862	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.573	45	2	1	0.5	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M8	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	247	28	13	0.464285714	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999963	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr14	50148338	12A2p6	cell line	sgMsh2	50148338	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.384	157	0	0	NA	exonic	Olfr729	frameshift deletion	Olfr729:NM_146278:exon1:c.535delT:p.C179Vfs*22	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	131	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	TAA	synonymous	NA	NA	NA	NA
M8	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	284	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	235	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	62	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	84	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CGT	synonymous	NA	NA	NA	NA
M8	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	30	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	47	107	27	0.252336449	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9790402	TAG	synonymous	NA	NA	NA	NA
M8	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	84	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	130	262	75	0.286259542	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M8	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.469	53	99	7	0.070707071	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-3072210-52852156	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	70	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9921457	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	90	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	54876467	12A2p6	cell line	sgMsh2	54876467	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	32	9	0	0	exonic	Ppp1r3e	nonsynonymous SNV	Ppp1r3e:NM_001167908:exon2:c.T747A:p.D249E	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9606517	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	54897171	12A2p6	cell line	sgMsh2	54897171	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	194	477	177	0.371069182	exonic	Pabpn1	synonymous SNV	Pabpn1:NM_019402:exon6:c.T768C:p.G256G	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999629	GTT	synonymous	NA	NA	NA	NA
M8	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	57	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr14	54985777	12A2p6	cell line	sgMsh2	54985777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	85	0	0	NA	exonic	Myh7	nonsynonymous SNV	"Myh7:NM_001361607:exon20:c.A2110G:p.I704V,Myh7:NM_080728:exon20:c.A2110G:p.I704V"	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr14	55064755	12A2p6	cell line	sgMsh2	55064755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	70	13	3	0.230769231	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A5771G:p.K1924R	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9921457	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	62	26	8	0.307692308	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr14	55113475	12A2p6	cell line	sgMsh2	55113475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	38	0	0	NA	exonic	Jph4	synonymous SNV	Jph4:NM_177049:exon3:c.C1083T:p.D361D	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	TGT	synonymous	NA	NA	NA	NA
M8	chr14	55589486	12A2p6	cell line	sgMsh2	55589486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.372	115	5	1	0.2	exonic	Psme2	nonsynonymous SNV	"Psme2:NM_001029855:exon5:c.A233G:p.K78R,Psme2:NM_011190:exon5:c.A257G:p.K86R"	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	CTT	nonsynonymous	CCTT	9	CCTTCCTTC	NA
M8	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	51	5	3	0.6	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9823113	CTT	synonymous	NA	NA	NA	NA
M8	chr14	55762728	12A2p6	cell line	sgMsh2	55762728	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	55	0	0	NA	exonic	Ltb4r2	nonsynonymous SNV	Ltb4r2:NM_020490:exon2:c.G805A:p.A269T	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	GGC	nonsynonymous	GC	8	GCGCGCGC	NA
M8	chr14	55870821	12A2p6	cell line	sgMsh2	55870821	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	95	0	0	NA	exonic	Nynrin	synonymous SNV	Nynrin:NM_001040072:exon8:c.C3384A:p.P1128P	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	CCA	synonymous	NA	NA	NA	NA
M8	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	139	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.398	143	24	0	0	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	166	12	4	0.333333333	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	162	101	1	0.00990099	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	193	22	7	0.318181818	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999613	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M8	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	9472	3214	0.339315878	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	60	1	0	0	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M8	chr14	66110173	12A2p6	cell line	sgMsh2	66110173	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	97	240	75	0.3125	exonic	Ephx2	nonsynonymous SNV	"Ephx2:NM_001271403:exon2:c.G235T:p.A79S,Ephx2:NM_001271421:exon2:c.G91T:p.A31S,Ephx2:NM_001271402:exon3:c.G130T:p.A44S,Ephx2:NM_007940:exon3:c.G289T:p.A97S"	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr14	66149015	12A2p6	cell line	sgMsh2	66149015	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	124	1	1	1	exonic	Chrna2	stopgain	Chrna2:NM_144803:exon6:c.G609A:p.W203X	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.341	129	4	0	0	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr14	68086066	12A2p6	cell line	sgMsh2	68086066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	126	0	0	NA	exonic	Nefl	synonymous SNV	Nefl:NM_010910:exon2:c.G1140A:p.K380K	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	AGA	synonymous	NA	NA	NA	NA
M8	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	142	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	TAT	synonymous	NA	NA	NA	NA
M8	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	61	55	13	0.236363636	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	73579376	12A2p6	cell line	sgMsh2	73579376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	111	152	52	0.342105263	exonic	Sucla2	synonymous SNV	"Sucla2:NM_001361638:exon4:c.T153C:p.S51S,Sucla2:NM_011506:exon5:c.T555C:p.S185S"	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	GTG	synonymous	NA	NA	NA	NA
M8	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	150	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	146	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	CAG	synonymous	NA	NA	NA	NA
M8	chr14	77034020	12A2p6	cell line	sgMsh2	77034020	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	119	5	0	0	exonic	Lacc1	nonsynonymous SNV	Lacc1:NM_172488:exon4:c.A726T:p.K242N	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr14	79768259	12A2p6	cell line	sgMsh2	79768259	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	97	0	0	NA	exonic	Pcdh8	nonsynonymous SNV	"Pcdh8:NM_001042726:exon2:c.G2397T:p.K799N,Pcdh8:NM_021543:exon2:c.G2688T:p.K896N"	14qD3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	293	75	11	0.146666667	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr14	103169955	12A2p6	cell line	sgMsh2	103169955	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	92	18	4	0.222222222	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon57:c.C8258A:p.P2753H	14qE2.3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	117	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr14	108912776	12A2p6	cell line	sgMsh2	108912776	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	80	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.A502G:p.T168A	14qE3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	138	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	AAG	synonymous	NA	NA	NA	NA
M8	chr14	111680102	12A2p6	cell line	sgMsh2	111680102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	109	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.A1232G:p.D411G,Slitrk5:NM_001378769:exon2:c.A1157G:p.D386G,Slitrk5:NM_001378770:exon2:c.A1157G:p.D386G,Slitrk5:NM_198865:exon2:c.A1157G:p.D386G"	14qE4	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	174	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	40	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9718373	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	85	17	6	0.352941176	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr14	121474650	12A2p6	cell line	sgMsh2	121474650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	96	0	0	NA	exonic	Slc15a1	nonsynonymous SNV	Slc15a1:NM_053079:exon16:c.T1165G:p.F389V	14qE5	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	261	364	90	0.247252747	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-53336808-123299668	2.9128162	2.9128162	0	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	132	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	238	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	185	56	0	0	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.09426486	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M8	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	137	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	ATG	synonymous	A	5	AAAAA	NA
M8	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	184	31	7	0.225806452	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9287869	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr15	7185733	12A2p6	cell line	sgMsh2	7185733	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	159	35	5	0.142857143	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.C2320T:p.H774Y,Lifr:NM_013584:exon16:c.C2320T:p.H774Y"	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.9256156	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	221	36	4	0.111111111	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	136	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.5732393	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	11388388	12A2p6	cell line	sgMsh2	11388388	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	113	283	57	0.201413428	exonic	Tars	synonymous SNV	Tars:NM_033074:exon12:c.T1320C:p.H440H	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	TAT	synonymous	NA	NA	NA	NA
M8	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	158	36	9	0.25	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.6057086	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	119	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9758788	CTT	nonsynonymous	G	5	GGGGG	NA
M8	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	190	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr15	16856053	12A2p6	cell line	sgMsh2	16856053	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	227	0	0	NA	exonic	Cdh9	synonymous SNV	Cdh9:NM_009869:exon12:c.A2178G:p.P726P	15qA2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8261561	CAA	synonymous	NA	NA	NA	NA
M8	chr15	27755139	12A2p6	cell line	sgMsh2	27755139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	87	69	2	0.028985507	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon43:c.A6335G:p.K2112R	15qB1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	136	68	0	0	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M8	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	186	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	TTG	synonymous	NA	NA	NA	NA
M8	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	242	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999954	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	44	907	53	0.058434399	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	324	68	9	0.132352941	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M8	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	135	34	10	0.294117647	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	182	7174	2683	0.373989406	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999377	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M8	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	104	693	130	0.187590188	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	2	0.8918568	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr15	39535929	12A2p6	cell line	sgMsh2	39535929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	153	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256383:exon18:c.A3369G:p.G1123G,Rims2:NM_001256382:exon19:c.A3435G:p.G1145G,Rims2:NM_053271:exon19:c.A3309G:p.G1103G"	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GAC	synonymous	NA	NA	NA	NA
M8	chr15	39680995	12A2p6	cell line	sgMsh2	39680995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	118	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon5:c.A506G:p.Y169C,Rims2:NM_001256383:exon25:c.A4301G:p.Y1434C,Rims2:NM_001256382:exon26:c.A4367G:p.Y1456C,Rims2:NM_053271:exon26:c.A4241G:p.Y1414C"	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.8949576	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	320	143	34	0.237762238	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9999764	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	169	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	47704293	12A2p6	cell line	sgMsh2	47704293	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	128	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.C6473T:p.T2158I	15qB3.3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9871936	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr15	48161084	12A2p6	cell line	sgMsh2	48161084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	251	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon12:c.A1799G:p.Y600C	15qB3.3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.7692261	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	179	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9626497	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr15	54600740	12A2p6	cell line	sgMsh2	54600740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	338	27	6	0.222222222	exonic	Mal2	stoploss	Mal2:NM_178920:exon4:c.T526C:p.X176Q	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8077106	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	141	1	0	0	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	TAA	synonymous	NA	NA	NA	NA
M8	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	126	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9992981	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	203	20	5	0.25	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr15	55501515	12A2p6	cell line	sgMsh2	55501515	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	52	0	0	NA	exonic	Col14a1	synonymous SNV	"Col14a1:NM_001368422:exon45:c.T5028C:p.G1676G,Col14a1:NM_181277:exon45:c.T5019C:p.G1673G"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	GTA	synonymous	NA	NA	NA	NA
M8	chr15	57822532	12A2p6	cell line	sgMsh2	57822532	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	78	40	7	0.175	exonic	Zhx2	nonsynonymous SNV	Zhx2:NM_199449:exon3:c.G1296T:p.K432N	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr15	60920331	12A2p6	cell line	sgMsh2	60920331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	168	0	0	NA	exonic	A1bg	synonymous SNV	A1bg:NM_001081067:exon4:c.A447G:p.V149V	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9927338	ATA	synonymous	NA	NA	NA	NA
M8	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	92	746	166	0.222520107	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.418	557	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	1.01E-09	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	136	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.7656064	TGA	synonymous	NA	NA	NA	NA
M8	chr15	66594935	12A2p6	cell line	sgMsh2	66594935	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	150	106	24	0.226415094	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon3:c.C212A:p.P71H	15qD2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.961945888	1	0.9988194	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr15	71820042	12A2p6	cell line	sgMsh2	71820042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	147	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon55:c.A3928G:p.R1310G	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	140	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.636511458	2	0.9975962	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	134	1	0	0	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	75667554	12A2p6	cell line	sgMsh2	75667554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	101	48	12	0.25	exonic	Top1mt	nonsynonymous SNV	"Top1mt:NM_001355589:exon8:c.G988A:p.V330M,Top1mt:NM_028404:exon8:c.G991A:p.V331M"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.7386225	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	118	54	22	0.407407407	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	228	8	3	0.375	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999915	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	158	373	155	0.415549598	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	GCG	synonymous	NA	NA	NA	NA
M8	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	61	307	52	0.169381107	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	GTG	synonymous	NA	NA	NA	NA
M8	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.319	53	206	51	0.247572816	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9837534	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.319	53	213	50	0.234741784	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9837534	AGA	synonymous	NA	NA	NA	NA
M8	chr15	76519378	12A2p6	cell line	sgMsh2	76519378	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.299	20	0	0	NA	exonic	Scrt1	frameshift deletion	Scrt1:NM_130893:exon2:c.411delC:p.S138Rfs*68	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M8	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	141	21	0	0	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M8	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.215	176	113	2	0.017699115	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	121	39	7	0.179487179	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	1	0.6014619	GGG	synonymous	NA	NA	NA	NA
M8	chr15	76694344	12A2p6	cell line	sgMsh2	76694344	C	-	Deletion	Strelka2;Vardict	2	0.22	50	21	3	0.142857143	exonic	Ppp1r16a	frameshift deletion	"Ppp1r16a:NM_033371:exon11:c.1247delC:p.R420Dfs*7,Ppp1r16a:NM_001358933:exon12:c.1247delC:p.R420Dfs*7"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	8	CCCCCCCC	-1
M8	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	163	13	4	0.307692308	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9957804	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr15	77132796	12A2p6	cell line	sgMsh2	77132796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	223	204	50	0.245098039	exonic	Rbfox2	nonsynonymous SNV	"Rbfox2:NM_001110828:exon2:c.A173G:p.N58S,Rbfox2:NM_001110829:exon2:c.A173G:p.N58S,Rbfox2:NM_001110830:exon2:c.A173G:p.N58S,Rbfox2:NM_001286417:exon2:c.A173G:p.N58S,Rbfox2:NM_001286418:exon2:c.A173G:p.N58S,Rbfox2:NM_001286419:exon2:c.A173G:p.N58S,Rbfox2:NM_001358771:exon2:c.A173G:p.N58S,Rbfox2:NM_001110827:exon3:c.A377G:p.N126S,Rbfox2:NM_001358770:exon3:c.A239G:p.N80S,Rbfox2:NM_001358772:exon3:c.A239G:p.N80S,Rbfox2:NM_053104:exon3:c.A377G:p.N126S,Rbfox2:NM_175387:exon3:c.A377G:p.N126S"	15qD3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9998564	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	229	600	102	0.17	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	87	4	0	0	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.7554466	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	123	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	CAG	synonymous	NA	NA	NA	NA
M8	chr15	78410383	12A2p6	cell line	sgMsh2	78410383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	78	99	21	0.212121212	exonic	Mpst	nonsynonymous SNV	"Mpst:NM_001162492:exon2:c.A314G:p.Q105R,Mpst:NM_001162493:exon2:c.A314G:p.Q105R,Mpst:NM_138670:exon2:c.A314G:p.Q105R"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.974935	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	128	1762	386	0.21906924	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9992453	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	124	158	31	0.196202532	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.9151153	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr15	79530443	12A2p6	cell line	sgMsh2	79530443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	164	493	97	0.196754564	exonic	Ddx17	nonsynonymous SNV	"Ddx17:NM_152806:exon2:c.A382G:p.R128G,Ddx17:NM_001040187:exon13:c.A1522G:p.R508G,Ddx17:NM_199080:exon13:c.A1528G:p.R510G"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9973081	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr15	80249886	12A2p6	cell line	sgMsh2	80249886	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	81	83	20	0.240963855	exonic	Mief1	synonymous SNV	"Mief1:NM_001357660:exon6:c.T609A:p.T203T,Mief1:NM_178719:exon6:c.T1143A:p.T381T,Mief1:NM_001357659:exon7:c.T1143A:p.T381T"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CTG	synonymous	GCCA	10	GCCAGCCAGC	NA
M8	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	124	55	17	0.309090909	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9992347	TCG	synonymous	NA	NA	NA	NA
M8	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	215	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9925339	TAT	synonymous	NA	NA	NA	NA
M8	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	182	154	32	0.207792208	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9982826	ATG	synonymous	NA	NA	NA	NA
M8	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	379	9	0	0	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9999796	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	84120191	12A2p6	cell line	sgMsh2	84120191	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.228	89	0	0	NA	exonic	Pnpla5	frameshift insertion	Pnpla5:NM_029427:exon4:c.693dupC:p.K232Qfs*2	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TTG	frameshift	G	5	GGGGG	1
M8	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	190	320	76	0.2375	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr15	84934916	12A2p6	cell line	sgMsh2	84934916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	219	206	41	0.199029126	exonic	Nup50	synonymous SNV	Nup50:NM_016714:exon5:c.T390C:p.S130S	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.829265	GTC	synonymous	NA	NA	NA	NA
M8	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	303	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.5710873	CTC	synonymous	NA	NA	NA	NA
M8	chr15	85873821	12A2p6	cell line	sgMsh2	85873821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	152	9	1	0.111111111	exonic	Gtse1	synonymous SNV	"Gtse1:NM_013882:exon8:c.C1627T:p.L543L,Gtse1:NM_001168672:exon9:c.C1627T:p.L543L"	15qE2	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	ACT	synonymous	TG	8	TGTGTGTG	NA
M8	chr15	88925633	12A2p6	cell line	sgMsh2	88925633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	126	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon8:c.A365G:p.Y122C,Ttll8:NM_172818:exon8:c.A959G:p.Y320C"	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.122	54	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.583867654	2	0.8791417	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	341	13	6	0.461538462	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.995689	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	91	36	3	0.083333333	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.7745514	GTA	synonymous	NA	NA	NA	NA
M8	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	204	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.999931	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr15	90959114	12A2p6	cell line	sgMsh2	90959114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	240	43	6	0.139534884	exonic	Kif21a	nonsynonymous SNV	"Kif21a:NM_016705:exon24:c.T3365G:p.L1122R,Kif21a:NM_001109041:exon25:c.T3386G:p.L1129R,Kif21a:NM_001109042:exon25:c.T3386G:p.L1129R,Kif21a:NM_001358050:exon25:c.T3386G:p.L1129R,Kif21a:NM_001109040:exon26:c.T3425G:p.L1142R"	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999949	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr15	91679865	12A2p6	cell line	sgMsh2	91679865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	137	49	15	0.306122449	exonic	Lrrk2	nonsynonymous SNV	Lrrk2:NM_025730:exon3:c.T331C:p.W111R	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9484299	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr15	94527820	12A2p6	cell line	sgMsh2	94527820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	104	22	5	0.227272727	exonic	Pus7l	nonsynonymous SNV	Pus7l:NM_172437:exon7:c.G1699A:p.D567N	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	TCC	nonsynonymous	NA	NA	NA	NA
M8	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	189	38	8	0.210526316	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9999418	CAC	synonymous	NA	NA	NA	NA
M8	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	147	122	16	0.131147541	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	GTA	synonymous	NA	NA	NA	NA
M8	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	160	147	31	0.210884354	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9977684	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr15	98289098	12A2p6	cell line	sgMsh2	98289098	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	167	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon6:c.A601T:p.M201L,Zfp641:NM_173769:exon6:c.A643T:p.M215L"	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9989551	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	87	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.8974348	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	249	66	15	0.227272727	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999966	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	103	30	1	0.033333333	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9762335	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr15	99424120	12A2p6	cell line	sgMsh2	99424120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	56	11	1	0.090909091	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon9:c.A3226G:p.K1076E	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	1	0.6062471	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	228	35	5	0.142857143	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9809418	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	20	4	0.2	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr15	102340023	12A2p6	cell line	sgMsh2	102340023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	121	62	1	0.016129032	exonic	Aaas	stopgain	Aaas:NM_153416:exon9:c.C856T:p.R286X	15qF3	chr15-3279130-102454328	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	CGG	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M8	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	113	11	1	0.090909091	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	synonymous	NA	NA	NA	NA
M8	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	201	91	25	0.274725275	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M8	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.221	173	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	208	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	52	9	2	0.222222222	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M8	chr16	4611384	12A2p6	cell line	sgMsh2	4611384	-	C	Insertion	Strelka2;Vardict	2	0.2222	81	47	0	0	exonic	Glis2	frameshift insertion	Glis2:NM_031184:exon4:c.451dupC:p.K154Qfs*22	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TTC	frameshift	TCCT	16	CTTCCTCCTTCCTTCC	1
M8	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	69	66	17	0.257575758	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr16	4627671	12A2p6	cell line	sgMsh2	4627671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	125	33	16	0.484848485	exonic	Coro7	nonsynonymous SNV	Coro7:NM_030205:exon27:c.T2702C:p.L901P	16qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	186	224	48	0.214285714	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9998631	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	44	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	ATG	synonymous	NA	NA	NA	NA
M8	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	56	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8323547	CAA	synonymous	NA	NA	NA	NA
M8	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	55	49	15	0.306122449	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	230	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	140	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.7810414	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	176	163	36	0.220858896	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9693867	ATG	synonymous	NA	NA	NA	NA
M8	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	123	312	73	0.233974359	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	203	192	39	0.203125	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	CTA	synonymous	NA	NA	NA	NA
M8	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	84	273	58	0.212454212	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	151	191	47	0.246073298	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	158	122	31	0.254098361	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.7405263	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M8	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	214	32	9	0.28125	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999844	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	155	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997997	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	106	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9974954	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	51	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.8439187	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	223	59	13	0.220338983	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9996558	CTC	synonymous	NA	NA	NA	NA
M8	chr16	17367514	12A2p6	cell line	sgMsh2	17367514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	75	54	17	0.314814815	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon8:c.T721C:p.Y241H,Pi4ka:NM_001373955:exon8:c.T904C:p.Y302H"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	131	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	80	120	32	0.266666667	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9870748	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	17807146	12A2p6	cell line	sgMsh2	17807146	A	G	SNV	Mutect2;MuSe	2	0.298	10	64	8	0.125	exonic	Scarf2	synonymous SNV	Scarf2:NM_153790:exon11:c.A2064G:p.K688K	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.09588952	AAC	synonymous	NA	NA	NA	NA
M8	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	73	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	89	11	0.123595506	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9823974	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	120	393	93	0.236641221	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	193	631	146	0.231378764	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9986953	CTG	synonymous	NA	NA	NA	NA
M8	chr16	20703252	12A2p6	cell line	sgMsh2	20703252	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	70	29	4	0.137931034	exonic	Clcn2	synonymous SNV	Clcn2:NM_009900:exon24:c.G2718A:p.K906K	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9921457	ACT	synonymous	NA	NA	NA	NA
M8	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	84	6	2	0.333333333	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	21766387	12A2p6	cell line	sgMsh2	21766387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	174	3	0	0	exonic	Ehhadh	nonsynonymous SNV	Ehhadh:NM_023737:exon6:c.A743G:p.K248R	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	82	8	0	0	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9948105	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	199	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	211	203	39	0.192118227	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9997237	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	30550411	12A2p6	cell line	sgMsh2	30550411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	16	0	0	NA	exonic	Tmem44	nonsynonymous SNV	"Tmem44:NM_001357414:exon1:c.T89G:p.F30C,Tmem44:NM_001384248:exon1:c.T89G:p.F30C,Tmem44:NM_172614:exon1:c.T89G:p.F30C"	16qB2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9243449	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr16	32625064	12A2p6	cell line	sgMsh2	32625064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	136	92	17	0.184782609	exonic	Tfrc	nonsynonymous SNV	"Tfrc:NM_001357298:exon16:c.A1685G:p.E562G,Tfrc:NM_011638:exon16:c.A1685G:p.E562G"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	153	1	0	0	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	376	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.51E-08	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	272	46	9	0.195652174	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999987	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	33434931	12A2p6	cell line	sgMsh2	33434931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	106	171	37	0.216374269	exonic	Zfp148	nonsynonymous SNV	"Zfp148:NM_001358569:exon4:c.A290G:p.H97R,Zfp148:NM_001358570:exon4:c.A290G:p.H97R,Zfp148:NM_011749:exon4:c.A290G:p.H97R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983345	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	93	5	1	0.2	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	35660184	12A2p6	cell line	sgMsh2	35660184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	35	0	0	NA	exonic	Sema5b	synonymous SNV	Sema5b:NM_013661:exon16:c.T2133C:p.A711A	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9652739	CTT	synonymous	NA	NA	NA	NA
M8	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	136	1	0	0	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	121	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	GAT	synonymous	NA	NA	NA	NA
M8	chr16	36928691	12A2p6	cell line	sgMsh2	36928691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	102	111	31	0.279279279	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon19:c.A9299G:p.H3100R	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.804014474	1	0.6823516	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	93	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	37511468	12A2p6	cell line	sgMsh2	37511468	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	105	50	14	0.28	exonic	Gtf2e1	nonsynonymous SNV	"Gtf2e1:NM_001355727:exon5:c.T1244A:p.L415Q,Gtf2e1:NM_028812:exon5:c.T1244A:p.L415Q"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8447862	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	56	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	288	23	2	0.086956522	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	TCT	synonymous	NA	NA	NA	NA
M8	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	242	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999954	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	290	39	12	0.307692308	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9988807	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr16	49078634	12A2p6	cell line	sgMsh2	49078634	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	183	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon7:c.T621A:p.N207K	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999403	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	75	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	169	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	232	764	189	0.247382199	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999928	CAC	synonymous	NA	NA	NA	NA
M8	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	247	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999963	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	122	257	66	0.256809339	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr16	57133247	12A2p6	cell line	sgMsh2	57133247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	147	533	114	0.213883677	exonic	Tomm70a	synonymous SNV	Tomm70a:NM_138599:exon2:c.A504G:p.Q168Q	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	AAT	synonymous	NA	NA	NA	NA
M8	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	376	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.51E-08	CTG	synonymous	NA	NA	NA	NA
M8	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	271	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	358	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.18E-08	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr16	59215763	12A2p6	cell line	sgMsh2	59215763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	207	0	0	NA	exonic	Olfr199	synonymous SNV	Olfr199:NM_207550:exon1:c.T849C:p.P283P	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	AAG	synonymous	NA	NA	NA	NA
M8	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	74	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.361	84	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8	chr16	63602261	12A2p6	cell line	sgMsh2	63602261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	96	0	0	NA	exonic	Epha3	synonymous SNV	"Epha3:NM_001362452:exon9:c.T1762C:p.L588L,Epha3:NM_010140:exon9:c.T1765C:p.L589L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	CAG	synonymous	NA	NA	NA	NA
M8	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.1927	109	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.922223745	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M8	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	336	28	4	0.142857143	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	74	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	CTG	synonymous	NA	NA	NA	NA
M8	chr16	79035203	12A2p6	cell line	sgMsh2	79035203	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	52	0	0	NA	exonic	Tmprss15	nonsynonymous SNV	"Tmprss15:NM_178855:exon11:c.T1019C:p.L340P,Tmprss15:NM_008941:exon12:c.T1064C:p.L355P"	16qC3.2	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr16	87409407	12A2p6	cell line	sgMsh2	87409407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	79	61	19	0.31147541	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon15:c.T2784C:p.G928G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.588653454	2	0.9744877	TAC	synonymous	NA	NA	NA	NA
M8	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	175	472	102	0.216101695	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	133	57	15	0.263157895	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr16	88671070	12A2p6	cell line	sgMsh2	88671070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	128	0	0	NA	exonic	Krtap27-1	synonymous SNV	Krtap27-1:NM_001163105:exon1:c.T585C:p.G195G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	CAC	synonymous	NA	NA	NA	NA
M8	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	191	48	12	0.25	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999578	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.206	69	8	0	0	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M8	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	222	11	5	0.454545455	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999989	CGC	synonymous	NA	NA	NA	NA
M8	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	160	94	26	0.276595745	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998386	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M8	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	44	68	11	0.161764706	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9164124	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr16	91656548	12A2p6	cell line	sgMsh2	91656548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	263	68	13	0.191176471	exonic	Son	nonsynonymous SNV	"Son:NM_019973:exon3:c.T2182C:p.S728P,Son:NM_178880:exon3:c.T2182C:p.S728P"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999981	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	82	21	7	0.333333333	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9911648	GTA	synonymous	NA	NA	NA	NA
M8	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	189	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr16	96175756	12A2p6	cell line	sgMsh2	96175756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	103	0	0	NA	exonic	Lca5l	nonsynonymous SNV	Lca5l:NM_001001492:exon5:c.A849G:p.I283M	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.8020529	GTA	nonsynonymous	T	5	TTTTT	NA
M8	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	246	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8	chr17	3437282	12A2p6	cell line	sgMsh2	3437282	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	102	20	5	0.25	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon7:c.C2077T:p.R693C,Tiam2:NM_011878:exon7:c.C2077T:p.R693C"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr17	5313920	12A2p6	cell line	sgMsh2	5313920	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	109	66	19	0.287878788	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon11:c.A3008C:p.N1003T	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9878248	AAC	nonsynonymous	CCTG	8	CCTGCCTG	NA
M8	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	274	83	13	0.156626506	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	114	27	3	0.111111111	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9906562	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	1121	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	1	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;MuSe;Vardict	3	0.114	1092	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54558125	2	1	CCT	synonymous	NA	NA	NA	NA
M8	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	75	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	132	132	25	0.189393939	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	CAT	synonymous	NA	NA	NA	NA
M8	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	288	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	307	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr17	18185134	12A2p6	cell line	sgMsh2	18185134	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.354	103	0	0	NA	exonic	Vmn2r92	frameshift deletion	"Vmn2r92:NM_001104541:exon6:c.2539delA:p.T850Hfs*11,Vmn2r92:NM_001385105:exon6:c.2536delA:p.T849Hfs*11"	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M8	chr17	18244322	12A2p6	cell line	sgMsh2	18244322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	582	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A1705G:p.R569G	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	177	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	2	0.9923244	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.238	398	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.46E-09	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	338	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9999941	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	771	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	19773530	12A2p6	cell line	sgMsh2	19773530	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.147	162	0	0	NA	exonic	Vmn2r103	frameshift insertion	Vmn2r103:NM_001104565:exon1:c.169dupA:p.M58Nfs*3	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	NA	NA	AGA	frameshift	NA	NA	NA	1
M8	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.243	518	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.03E-09	GTA	synonymous	NA	NA	NA	NA
M8	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	278	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	194	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9740018	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	184	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9973601	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr17	20541376	12A2p6	cell line	sgMsh2	20541376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	166	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.A1718G:p.K573R	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	313	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	216	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	383	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9999959	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	23640185	12A2p6	cell line	sgMsh2	23640185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	123	0	0	NA	exonic	Mmp25	nonsynonymous SNV	Mmp25:NM_001033339:exon3:c.T487C:p.Y163H	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.5234229	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	209	48	17	0.354166667	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999806	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	126	72	8	0.111111111	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	41	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9729973	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	24717463	12A2p6	cell line	sgMsh2	24717463	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	195	0	0	NA	exonic	Rnf151	nonsynonymous SNV	Rnf151:NM_026205:exon2:c.G149T:p.R50I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999645	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	152	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	24890310	12A2p6	cell line	sgMsh2	24890310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	73	27	5	0.185185185	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon3:c.T592C:p.Y198H,Spsb3:NM_001163751:exon3:c.T247C:p.Y83H,Spsb3:NM_001374602:exon3:c.T154C:p.Y52H,Spsb3:NM_027141:exon3:c.T259C:p.Y87H"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	108	57	10	0.175438596	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984723	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	79	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M8	chr17	25948050	12A2p6	cell line	sgMsh2	25948050	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	61	0	0	NA	exonic	A930017K11Rik	nonsynonymous SNV	A930017K11Rik:NM_001358019:exon2:c.T512C:p.I171T	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.8871596	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	26117514	12A2p6	cell line	sgMsh2	26117514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	155	4	2	0.5	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon4:c.T605C:p.L202P	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997997	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	59	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	41	11	5	0.454545455	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9729973	GAG	synonymous	NA	NA	NA	NA
M8	chr17	27087174	12A2p6	cell line	sgMsh2	27087174	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	113	241	65	0.269709544	exonic	Itpr3	nonsynonymous SNV	Itpr3:NM_080553:exon6:c.A557C:p.N186T	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	117	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	91	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9628783	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	98	10	0	0	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9942894	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	94	85	24	0.282352941	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	91	276	65	0.235507246	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	CGT	nonsynonymous	NA	NA	NA	NA
M8	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	185	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	28824046	12A2p6	cell line	sgMsh2	28824046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	322	28	4	0.142857143	exonic	Brpf3	synonymous SNV	Brpf3:NM_001081315:exon9:c.A3060G:p.G1020G	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GAC	synonymous	NA	NA	NA	NA
M8	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	169	47	18	0.382978723	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	54	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844305	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M8	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	207	60	4	0.066666667	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9998943	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr17	30722915	12A2p6	cell line	sgMsh2	30722915	A	-	Deletion	Strelka2;Vardict	2	0.1775	169	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon37:c.5134delA:p.N1714Ifs*19	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.849479578	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M8	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	166	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.144	156	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.689155263	2	0.9908231	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	101	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.8903842	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	137	44	12	0.272727273	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M8	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	132	41	4	0.097560976	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M8	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	136	84	19	0.226190476	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	32941057	12A2p6	cell line	sgMsh2	32941057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	55	45	7	0.155555556	exonic	Cyp4f13	synonymous SNV	Cyp4f13:NM_130882:exon3:c.A342C:p.S114S	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	CTG	synonymous	NA	NA	NA	NA
M8	chr17	33551429	12A2p6	cell line	sgMsh2	33551429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	60	12	2	0.166666667	exonic	Adamts10	synonymous SNV	"Adamts10:NM_001329147:exon22:c.A2007G:p.E669E,Adamts10:NM_001329143:exon23:c.A2007G:p.E669E,Adamts10:NM_001329151:exon23:c.A1776G:p.E592E,Adamts10:NM_001329152:exon23:c.A1776G:p.E592E,Adamts10:NM_001329153:exon23:c.A1770G:p.E590E,Adamts10:NM_001329154:exon23:c.A1770G:p.E590E,Adamts10:NM_001329202:exon24:c.A1770G:p.E590E,Adamts10:NM_001329203:exon24:c.A2100G:p.E700E,Adamts10:NM_172619:exon24:c.A3204G:p.E1068E"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	AAG	synonymous	NA	NA	NA	NA
M8	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	75	37	13	0.351351351	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	ATT	synonymous	NA	NA	NA	NA
M8	chr17	33939053	12A2p6	cell line	sgMsh2	33939053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.39	41	107	31	0.289719626	exonic	Pfdn6	nonsynonymous SNV	"Pfdn6:NM_010385:exon4:c.A319G:p.T107A,Pfdn6:NM_001185182:exon5:c.A319G:p.T107A"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9729973	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	42	4	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	85	1	1	1	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	84	1	0	0	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	58	3	1	0.333333333	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	GAG	nonsynonymous	C	5	CCCCC	NA
M8	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	101	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	GCT	synonymous	G	5	GGGGG	NA
M8	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	26	5	2	0.4	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9495799	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	34729901	12A2p6	cell line	sgMsh2	34729901	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	43	3	0	0	exonic	C4b	synonymous SNV	C4b:NM_009780:exon36:c.T4572C:p.P1524P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9751795	TAG	synonymous	NA	NA	NA	NA
M8	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	210	8	3	0.375	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	CAG	synonymous	NA	NA	NA	NA
M8	chr17	34895834	12A2p6	cell line	sgMsh2	34895834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	54	142	31	0.218309859	exonic	Zbtb12	synonymous SNV	Zbtb12:NM_198886:exon2:c.T594C:p.D198D	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844305	ATG	synonymous	GAG	14	GAGGAGGATGAGGA	NA
M8	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	103	119	31	0.260504202	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9917739	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	160	265	69	0.260377358	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998386	CGC	synonymous	NA	NA	NA	NA
M8	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	56	16	0.285714286	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9941856	ATG	synonymous	NA	NA	NA	NA
M8	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	76	28	5	0.178571429	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939302	TAC	synonymous	NA	NA	NA	NA
M8	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	80	15	0.1875	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9966909	CAG	synonymous	NA	NA	NA	NA
M8	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	73	108	21	0.194444444	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	36168119	12A2p6	cell line	sgMsh2	36168119	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	103	0	0	NA	exonic	Gm8909	synonymous SNV	Gm8909:NM_001081032:exon2:c.C153T:p.G51G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	AGC	synonymous	NA	NA	NA	NA
M8	chr17	36190105	12A2p6	cell line	sgMsh2	36190105	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.119	90	0	0	NA	exonic	H2-T3	synonymous SNV	H2-T3:NM_008208:exon1:c.T24C:p.P8P	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.569510252	2	0.992357	CAG	synonymous	NA	NA	NA	NA
M8	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	167	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998808	GCA	nonsynonymous	NA	NA	NA	NA
M8	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	185	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	37563942	12A2p6	cell line	sgMsh2	37563942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.252	637	0	0	NA	exonic	Olfr112	nonsynonymous SNV	Olfr112:NM_001013575:exon5:c.A368G:p.Y123C	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.262	497	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	640	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M8	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Strelka2;Vardict	2	0.2609	253	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M8	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	221	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	157	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998163	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	446	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.68E-09	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	82	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	63	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	273	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	AGG	synonymous	NA	NA	NA	NA
M8	chr17	42798604	12A2p6	cell line	sgMsh2	42798604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	294	654	215	0.328746177	exonic	Cd2ap	synonymous SNV	Cd2ap:NM_009847:exon17:c.T1863C:p.S621S	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	TAC	synonymous	NA	NA	NA	NA
M8	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	93	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	154	74	15	0.202702703	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	154	84	17	0.202380952	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	27	104	19	0.182692308	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9500416	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	146	41	3	0.073170732	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	AGG	synonymous	NA	NA	NA	NA
M8	chr17	46194384	12A2p6	cell line	sgMsh2	46194384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	148	38	13	0.342105263	exonic	Polh	nonsynonymous SNV	Polh:NM_030715:exon4:c.T305C:p.I102T	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9966911	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	127	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	TGC	nonsynonymous	NA	NA	NA	NA
M8	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	119	100	20	0.2	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	39	16	6	0.375	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.970629	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	72	96	0	0	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	54	178	36	0.202247191	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9645453	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	100	39	7	0.179487179	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	174	4	3	0.75	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	113	2	1	0.5	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9965717	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	162	28	5	0.178571429	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	57210260	12A2p6	cell line	sgMsh2	57210260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	121	1	0	0	exonic	C3	synonymous SNV	C3:NM_009778:exon30:c.T3874C:p.L1292L	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	AAG	synonymous	NA	NA	NA	NA
M8	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	234	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr17	58330178	12A2p6	cell line	sgMsh2	58330178	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	282	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon19:c.T3049G:p.S1017A	17qD	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	64133519	12A2p6	cell line	sgMsh2	64133519	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	207	87	23	0.264367816	exonic	Fer	nonsynonymous SNV	"Fer:NM_008000:exon12:c.A1020C:p.E340D,Fer:NM_001286415:exon16:c.A1956C:p.E652D,Fer:NM_001037997:exon17:c.A2130C:p.E710D"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	146	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	121	1215	279	0.22962963	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	TAG	synonymous	NA	NA	NA	NA
M8	chr17	66448770	12A2p6	cell line	sgMsh2	66448770	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	29	85	22	0.258823529	exonic	Mtcl1	synonymous SNV	"Mtcl1:NM_001114098:exon1:c.C576A:p.G192G,Mtcl1:NM_172963:exon1:c.C576A:p.G192G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9554425	AGC	synonymous	CAGC	10	CAGCCAGCCA	NA
M8	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	90	2	0	0	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M8	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	165	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.999802	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr17	68461550	12A2p6	cell line	sgMsh2	68461550	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	277	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.G652T:p.V218L	17qE1.2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr17	71256483	12A2p6	cell line	sgMsh2	71256483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	21	0	0	NA	exonic	Emilin2	nonsynonymous SNV	"Emilin2:NM_001357336:exon5:c.T2323G:p.L775V,Emilin2:NM_001357337:exon5:c.T2563G:p.L855V,Emilin2:NM_001357338:exon5:c.T2566G:p.L856V,Emilin2:NM_145158:exon5:c.T2566G:p.L856V"	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9381579	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	71897972	12A2p6	cell line	sgMsh2	71897972	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	80	0	0	NA	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon20:c.G3204T:p.Q1068H	17qE1.3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.151	127	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9099595	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr17	78831514	12A2p6	cell line	sgMsh2	78831514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	56	39	11	0.282051282	exonic	Heatr5b	synonymous SNV	Heatr5b:NM_001081179:exon3:c.A198G:p.P66P	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	1	0.704877	GTG	synonymous	NA	NA	NA	NA
M8	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	154	80	15	0.1875	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9860179	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	204	59	17	0.288135593	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999759	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	240	91	27	0.296703297	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999949	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	224	85	27	0.317647059	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M8	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	138	68	11	0.161764706	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	107	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr17	85028599	12A2p6	cell line	sgMsh2	85028599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	51	0	0	NA	exonic	Slc3a1	synonymous SNV	Slc3a1:NM_009205:exon1:c.T168G:p.P56P	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9811752	CTC	synonymous	NA	NA	NA	NA
M8	chr17	85621880	12A2p6	cell line	sgMsh2	85621880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	59	0	0	NA	exonic	Six3	nonsynonymous SNV	Six3:NM_011381:exon1:c.T641C:p.F214S	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	70	5	0	0	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-3079405-87650787	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9823637	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.306	83	151	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	12	6	6	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	NA	NA	AGT	frameshift	NA	NA	NA	-4
M8	chr17	88479276	12A2p6	cell line	sgMsh2	88479276	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	122	33	12	0.363636364	exonic	Foxn2	nonsynonymous SNV	"Foxn2:NM_001355742:exon4:c.T633G:p.S211R,Foxn2:NM_001355743:exon4:c.T633G:p.S211R,Foxn2:NM_180974:exon4:c.T633G:p.S211R"	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr17	90208360	12A2p6	cell line	sgMsh2	90208360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	116	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346958:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346959:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346960:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346961:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346957:exon16:c.G3630T:p.Q1210H,Nrxn1:NM_177284:exon17:c.G3645T:p.Q1215H,Nrxn1:NM_020252:exon19:c.G3681T:p.Q1227H"	17qE5	chr17-87745782-94740433	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	204	226	56	0.247787611	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	83	16	2	0.125	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr18	5054038	12A2p6	cell line	sgMsh2	5054038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	174	1	0	0	exonic	Svil	nonsynonymous SNV	Svil:NM_153153:exon4:c.A791G:p.E264G	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9401628	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	265	105	20	0.19047619	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999983	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M8	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.402	93	123	31	0.25203252	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr18	10080406	12A2p6	cell line	sgMsh2	10080407	TC	-	Deletion	Strelka2;Vardict	2	0.1756	131	146	2	0.01369863	exonic	Rock1	frameshift deletion	Rock1:NM_009071:exon26:c.3136_3137del:p.E1046Kfs*2	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.840386557	NA	NA	TTC	frameshift	TC	9	TCTCTCTCT	-2
M8	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	134	1	0	0	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9773189	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	198	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	13844351	12A2p6	cell line	sgMsh2	13844351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	150	0	0	NA	exonic	Zfp521	nonsynonymous SNV	"Zfp521:NM_001360804:exon4:c.G3004A:p.E1002K,Zfp521:NM_145492:exon4:c.G3004A:p.E1002K"	18qA1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	TCC	nonsynonymous	NA	NA	NA	NA
M8	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	186	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr18	22524412	12A2p6	cell line	sgMsh2	22524412	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	120	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.G5478T:p.Q1826H	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	168	5	1	0.2	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	76	60	5	0.083333333	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr18	24271588	12A2p6	cell line	sgMsh2	24271588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	122	351	35	0.0997151	exonic	Galnt1	synonymous SNV	"Galnt1:NM_001160404:exon9:c.T981C:p.I327I,Galnt1:NM_001361200:exon9:c.T981C:p.I327I,Galnt1:NM_013814:exon9:c.T981C:p.I327I"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	TTT	synonymous	NA	NA	NA	NA
M8	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	78	7	2	0.285714286	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	31	15	0	0	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9589837	GGG	synonymous	NA	NA	NA	NA
M8	chr18	31961830	12A2p6	cell line	sgMsh2	31961830	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	150	0	0	NA	exonic	Myo7b	nonsynonymous SNV	Myo7b:NM_032394:exon42:c.A5711T:p.D1904V	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	102	4	0	0	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	100	63	17	0.26984127	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	151	93	16	0.172043011	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	141	63	11	0.174603175	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	118	133	24	0.180451128	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	TAC	synonymous	T	5	TTTTT	NA
M8	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	162	966	229	0.237060041	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9537499	ATT	synonymous	NA	NA	NA	NA
M8	chr18	35623472	12A2p6	cell line	sgMsh2	35623472	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	125	1	0	0	exonic	Slc23a1	frameshift deletion	Slc23a1:NM_011397:exon9:c.1073delC:p.P358Lfs*38	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M8	chr18	35739535	12A2p6	cell line	sgMsh2	35739535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	168	20	4	0.2	exonic	Sting1	nonsynonymous SNV	"Sting1:NM_001289591:exon2:c.G190T:p.G64C,Sting1:NM_001289592:exon3:c.G43T:p.G15C,Sting1:NM_028261:exon3:c.G43T:p.G15C"	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr18	36685431	12A2p6	cell line	sgMsh2	36685431	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	101	1	1	1	exonic	E230025N22Rik	synonymous SNV	E230025N22Rik:NM_172831:exon13:c.G1344A:p.Q448Q	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	GCT	synonymous	NA	NA	NA	NA
M8	chr18	36737822	12A2p6	cell line	sgMsh2	36737822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	102	27	7	0.259259259	exonic	Tmco6	synonymous SNV	Tmco6:NM_028036:exon4:c.C468A:p.T156T	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	CCT	synonymous	ACCT	19	CCTACCTCCTCACCTACCT	NA
M8	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	89	287	54	0.18815331	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	337	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	ATT	synonymous	ATT	9	ATTATTATT	NA
M8	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	242	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999954	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	37295009	12A2p6	cell line	sgMsh2	37295009	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	191	1	0	0	exonic	Pcdhb2	frameshift deletion	Pcdhb2:NM_053127:exon1:c.34delA:p.R14Gfs*11	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.171	134	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.7234458	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	300	2	0	0	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999996	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	241	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999951	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	133	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9805927	ATT	nonsynonymous	T	5	TTTTT	NA
M8	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	131	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	CAG	synonymous	NA	NA	NA	NA
M8	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	308	2	1	0.5	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	320	197	44	0.223350254	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	76	37	12	0.324324324	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939302	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	172	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999904	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	207	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	GTT	nonsynonymous	T	5	TTTTT	NA
M8	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	96	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	194	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999629	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	136	22	1	0.045454545	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	167	4	0	0	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998808	AAG	synonymous	NA	NA	NA	NA
M8	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	417	618	133	0.215210356	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.40E-09	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	46607919	12A2p6	cell line	sgMsh2	46607919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	396	706	156	0.220963173	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T550C:p.S184P,Eif1a:NM_010120:exon3:c.T220C:p.S74P"	18qC	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.95E-09	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	140	50	10	0.2	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	54	71	18	0.253521127	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9844305	CGA	synonymous	NA	NA	NA	NA
M8	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	85	18	2	0.111111111	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	98	86	11	0.127906977	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	CTA	synonymous	NA	NA	NA	NA
M8	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	112	64	12	0.1875	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr18	58954556	12A2p6	cell line	sgMsh2	58954556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	79	0	0	NA	exonic	Adamts19	nonsynonymous SNV	Adamts19:NM_175506:exon10:c.A1657G:p.S553G	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	59007401	12A2p6	cell line	sgMsh2	59007401	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	144	0	0	NA	exonic	Adamts19	synonymous SNV	Adamts19:NM_175506:exon17:c.T2571C:p.A857A	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M8	chr18	60602739	12A2p6	cell line	sgMsh2	60602739	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	87	20	1	0.05	exonic	Synpo	frameshift deletion	"Synpo:NM_001109975:exon2:c.1417delG:p.A473Lfs*15,Synpo:NM_177340:exon2:c.1417delG:p.A473Lfs*15"	18qD3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	115	58	14	0.24137931	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	48	12	0.25	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr18	65935089	12A2p6	cell line	sgMsh2	65935089	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	23	0	0	NA	exonic	Rax	nonsynonymous SNV	Rax:NM_013833:exon3:c.A944G:p.Y315C	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9429916	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	113	183	42	0.229508197	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	TTT	nonsynonymous	T	5	TTTTT	NA
M8	chr18	67807383	12A2p6	cell line	sgMsh2	67807383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	109	34	3	0.088235294	exonic	Cep192	synonymous SNV	Cep192:NM_027556:exon5:c.T420C:p.V140V	18qE1	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	TTT	synonymous	NA	NA	NA	NA
M8	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	146	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	183	49	9	0.183673469	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999403	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	9	2	0.222222222	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr18	75521562	12A2p6	cell line	sgMsh2	75521562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	130	32	10	0.3125	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.T892C:p.C298R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	CAG	nonsynonymous	G	5	GGGGG	NA
M8	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	156	29	9	0.310344828	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998082	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr18	77356771	12A2p6	cell line	sgMsh2	77356771	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	156	0	0	NA	exonic	Loxhd1	nonsynonymous SNV	Loxhd1:NM_172834:exon14:c.A1822G:p.T608A	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998082	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr18	78185849	12A2p6	cell line	sgMsh2	78185849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	57	0	0	NA	exonic	Slc14a2	nonsynonymous SNV	"Slc14a2:NM_001110274:exon5:c.A494C:p.Y165S,Slc14a2:NM_030683:exon9:c.A908C:p.Y303S,Slc14a2:NM_207651:exon9:c.A908C:p.Y303S"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr18	78859571	12A2p6	cell line	sgMsh2	78859571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	115	2	0	0	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A880T:p.T294S	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9877284	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr18	80192700	12A2p6	cell line	sgMsh2	80192700	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	87	92	11	0.119565217	exonic	Rbfa	nonsynonymous SNV	Rbfa:NM_199197:exon6:c.G833A:p.R278H	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr18	80973992	12A2p6	cell line	sgMsh2	80973992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	26	0	0	NA	exonic	Sall3	synonymous SNV	"Sall3:NM_001369133:exon2:c.G720T:p.R240R,Sall3:NM_178280:exon2:c.G720T:p.R240R"	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9495799	GCC	synonymous	NA	NA	NA	NA
M8	chr18	82405993	12A2p6	cell line	sgMsh2	82405993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	148	0	0	NA	exonic	Galr1	nonsynonymous SNV	Galr1:NM_008082:exon1:c.T158C:p.L53P	18qE3	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9996741	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	137	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	161	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr18	86716721	12A2p6	cell line	sgMsh2	86716721	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	142	0	0	NA	exonic	Cbln2	synonymous SNV	"Cbln2:NM_001361143:exon4:c.C618T:p.N206N,Cbln2:NM_001361144:exon4:c.C618T:p.N206N,Cbln2:NM_001361145:exon4:c.C618T:p.N206N,Cbln2:NM_172633:exon4:c.C618T:p.N206N,Cbln2:NM_001302356:exon5:c.C618T:p.N206N,Cbln2:NM_001361142:exon5:c.C618T:p.N206N"	18qE4	chr18-5046666-88869177	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	ACC	synonymous	NA	NA	NA	NA
M8	chr18	89207028	12A2p6	cell line	sgMsh2	89207028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	272	0	0	NA	exonic	Cd226	synonymous SNV	Cd226:NM_178687:exon3:c.A48G:p.A16A	18qE4	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M8	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	156	47	7	0.14893617	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	3628419	12A2p6	cell line	sgMsh2	3628419	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	205	200	9	0.045	exonic	Lrp5	frameshift deletion	Lrp5:NM_008513:exon7:c.1435delG:p.E479Rfs*9	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	75	22	5	0.227272727	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.731	81	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.404	130	2	1	0.5	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	157	1	1	1	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	68	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M8	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	237	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M8	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	111	3	1	0.333333333	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5114002	12A2p6	cell line	sgMsh2	5114002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	132	40	4	0.1	exonic	Klc2	nonsynonymous SNV	"Klc2:NM_001369360:exon3:c.A398T:p.E133V,Klc2:NM_001369361:exon3:c.A398T:p.E133V,Klc2:NM_001369362:exon3:c.A398T:p.E133V,Klc2:NM_008451:exon3:c.A398T:p.E133V"	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5156410	12A2p6	cell line	sgMsh2	5156410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	121	117	12	0.102564103	exonic	Pacs1	nonsynonymous SNV	"Pacs1:NM_153129:exon5:c.A746G:p.Y249C,Pacs1:NM_001362451:exon6:c.A527G:p.Y176C"	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	5450259	12A2p6	cell line	sgMsh2	5450259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	85	225	37	0.164444444	exonic	Fosl1	nonsynonymous SNV	Fosl1:NM_010235:exon2:c.G205A:p.A69T	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5462623	12A2p6	cell line	sgMsh2	5462623	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	233	148	22	0.148648649	exonic	Fibp	nonsynonymous SNV	"Fibp:NM_001253832:exon4:c.G503A:p.R168Q,Fibp:NM_021438:exon4:c.G503A:p.R168Q"	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr19	5503371	12A2p6	cell line	sgMsh2	5503371	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	255	1	0	0	exonic	1700020D05Rik	synonymous SNV	1700020D05Rik:NM_023781:exon1:c.G381A:p.V127V	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ACA	synonymous	NA	NA	NA	NA
M8	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	164	108	34	0.314814815	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	73	59	19	0.322033898	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr19	5702210	12A2p6	cell line	sgMsh2	5702210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	63	71	8	0.112676056	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2419G:p.T807A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	74	2	1	0.5	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M8	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	62	177	57	0.322033898	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	112	323	42	0.13003096	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M8	chr19	5918378	12A2p6	cell line	sgMsh2	5918378	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	93	18	2	0.111111111	exonic	Cdc42ep2	nonsynonymous SNV	Cdc42ep2:NM_026772:exon2:c.C298A:p.L100M	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	59	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr19	6117964	12A2p6	cell line	sgMsh2	6117964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	30	11	4	0.363636364	exonic	Sac3d1	nonsynonymous SNV	Sac3d1:NM_133678:exon1:c.T623C:p.V208A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr19	6171394	12A2p6	cell line	sgMsh2	6171394	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	90	0	0	NA	exonic	Batf2	nonsynonymous SNV	"Batf2:NM_001356604:exon3:c.T230C:p.L77P,Batf2:NM_001379529:exon3:c.T224C:p.L75P,Batf2:NM_028967:exon3:c.T233C:p.L78P"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9830951	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	6989812	12A2p6	cell line	sgMsh2	6989812	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	196	51	11	0.215686275	exonic	Dnajc4	synonymous SNV	"Dnajc4:NM_001356999:exon3:c.G291A:p.E97E,Dnajc4:NM_001357000:exon4:c.G291A:p.E97E,Dnajc4:NM_001357001:exon4:c.G243A:p.E81E,Dnajc4:NM_020566:exon4:c.G243A:p.E81E"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9865828	GCT	synonymous	NA	NA	NA	NA
M8	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	350	422	108	0.255924171	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.45E-08	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	39	7	3	0.428571429	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	126	454	129	0.284140969	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	44	80	29	0.3625	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	GTC	synonymous	NA	NA	NA	NA
M8	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	149	2	1	0.5	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	127	2	0	0	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	GTA	synonymous	NA	NA	NA	NA
M8	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	597	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.9999881	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	470	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	2	1.27E-09	TTG	synonymous	NA	NA	NA	NA
M8	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	369	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	NA	NA	CTA	frameshift	NA	NA	NA	-1
M8	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	764	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.636511458	2	1	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M8	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	375	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr19	13815007	12A2p6	cell line	sgMsh2	13815007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	296	0	0	NA	exonic	Olfr1499	synonymous SNV	Olfr1499:NM_146796:exon1:c.T582C:p.N194N	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9719809	CAT	synonymous	NA	NA	NA	NA
M8	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	232	327	49	0.149847095	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	2	0.5660917	CGT	nonsynonymous	NA	NA	NA	NA
M8	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	369	110	30	0.272727273	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.01E-08	TAC	synonymous	NA	NA	NA	NA
M8	chr19	16872425	12A2p6	cell line	sgMsh2	16872425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	89	0	0	NA	exonic	Foxb2	synonymous SNV	Foxb2:NM_008023:exon1:c.T1216C:p.L406L	19qB	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	1	0.5209544	AAG	synonymous	NA	NA	NA	NA
M8	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	283	87	1	0.011494253	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9944833	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr19	21829801	12A2p6	cell line	sgMsh2	21829801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	162	44	5	0.113636364	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon16:c.A2593G:p.T865A,Cemip2:NM_031997:exon17:c.A2593G:p.T865A"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.588653454	2	0.9999153	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	134	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr19	23893569	12A2p6	cell line	sgMsh2	23893569	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	64	0	0	NA	exonic	Apba1	nonsynonymous SNV	Apba1:NM_177034:exon2:c.A764T:p.K255M	19qB	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.7894661	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	276	553	104	0.188065099	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.6039992	CTC	synonymous	NA	NA	NA	NA
M8	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	238	1	0	0	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999945	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr19	29437440	12A2p6	cell line	sgMsh2	29437440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	96	0	0	NA	exonic	Pdcd1lg2	nonsynonymous SNV	Pdcd1lg2:NM_021396:exon3:c.T266C:p.I89T	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.950676	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	154	43	3	0.069767442	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9984524	TCG	synonymous	NA	NA	NA	NA
M8	chr19	31083190	12A2p6	cell line	sgMsh2	31083190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	207	48	7	0.145833333	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.T125C:p.V42A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.9787321	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr19	31764716	12A2p6	cell line	sgMsh2	31764716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	190	0	0	NA	exonic	Prkg1	nonsynonymous SNV	Prkg1:NM_001013833:exon1:c.T107C:p.L36P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.559938651	2	0.9999971	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	117	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.8946933	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	361	21	7	0.333333333	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.80E-08	GTG	synonymous	NA	NA	NA	NA
M8	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	397	13	2	0.153846154	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.804014474	2	0.09433265	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	379	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.34E-08	TAC	synonymous	NA	NA	NA	NA
M8	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	301	7	0	0	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M8	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	149	2	0	0	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9982002	GTG	synonymous	NA	NA	NA	NA
M8	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	149	442	122	0.2760181	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	CAG	synonymous	NA	NA	NA	NA
M8	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	246	107	30	0.280373832	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999961	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr19	37004443	12A2p6	cell line	sgMsh2	37004443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	223	101	9	0.089108911	exonic	Btaf1	synonymous SNV	Btaf1:NM_001080706:exon35:c.C4872T:p.D1624D	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.993694	ACT	synonymous	NA	NA	NA	NA
M8	chr19	37639757	12A2p6	cell line	sgMsh2	37639757	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.126	275	38	9	0.236842105	exonic	Exoc6	nonsynonymous SNV	Exoc6:NM_175353:exon19:c.T2089C:p.C697R	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	0.9999999	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	38097545	12A2p6	cell line	sgMsh2	38097545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	52	39	5	0.128205128	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.T419C:p.I140T	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9482589	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr19	38097601	12A2p6	cell line	sgMsh2	38097601	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	34	18	1	0.055555556	exonic	Ffar4	nonsynonymous SNV	Ffar4:NM_181748:exon1:c.C475A:p.L159M	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9637945	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	417	2	0	0	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.40E-09	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	164	87	9	0.103448276	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.9344685	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	39615653	12A2p6	cell line	sgMsh2	39615653	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	343	0	0	NA	exonic	Cyp2c67	nonsynonymous SNV	Cyp2c67:NM_001024719:exon8:c.A1258G:p.K420E	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8673647	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	40913472	12A2p6	cell line	sgMsh2	40913472	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	451	42	0	0	exonic	Zfp518a	nonsynonymous SNV	Zfp518a:NM_028319:exon5:c.A1844C:p.N615T	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.9968668	AAT	nonsynonymous	ATTA	8	ATTAATTA	NA
M8	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	250	36	0	0	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9378401	AAG	synonymous	NA	NA	NA	NA
M8	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	248	988	371	0.375506073	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999964	GAC	synonymous	NA	NA	NA	NA
M8	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	81	57	11	0.192982456	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8735434	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	77	43	8	0.186046512	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9540633	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr19	44238510	12A2p6	cell line	sgMsh2	44238510	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	145	3	1	0.333333333	exonic	Scd3	nonsynonymous SNV	Scd3:NM_024450:exon5:c.C782T:p.T261I	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.993697	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	134	228	64	0.280701754	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	137	238	77	0.323529412	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	AAG	synonymous	NA	NA	NA	NA
M8	chr19	46259704	12A2p6	cell line	sgMsh2	46259704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	123	54	11	0.203703704	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon10:c.A919G:p.T307A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8623557	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	55	7	1	0.142857143	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	46330262	12A2p6	cell line	sgMsh2	46330262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	123	10	0	0	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T982C:p.F328L,Fbxl15:NM_133694:exon4:c.T874C:p.F292L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.794588	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	88	369	54	0.146341463	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	CTT	synonymous	NA	NA	NA	NA
M8	chr19	46652483	12A2p6	cell line	sgMsh2	46652483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	112	147	18	0.12244898	exonic	Wbp1l	nonsynonymous SNV	"Wbp1l:NM_001177813:exon3:c.T140C:p.L47P,Wbp1l:NM_146099:exon3:c.T203C:p.L68P,Wbp1l:NM_001177812:exon4:c.T251C:p.L84P"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	1	0.5555059	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M8	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	169	191	20	0.104712042	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.8938952	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	131	124	18	0.14516129	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.8909682	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr19	47397847	12A2p6	cell line	sgMsh2	47397847	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	73	23	4	0.173913043	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon3:c.T198G:p.D66E,Sh3pxd2a:NM_008018:exon3:c.T198G:p.D66E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.5443794	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	271	159	15	0.094339623	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.502509046	2	0.9999881	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	48645837	12A2p6	cell line	sgMsh2	48645837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	119	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon6:c.G1074A:p.T358T	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.636511458	2	0.9922509	CGG	synonymous	NA	NA	NA	NA
M8	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	195	38	8	0.210526316	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.99996	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	133	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.507294846	2	0.9993404	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr19	56855387	12A2p6	cell line	sgMsh2	56855387	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	124	0	0	NA	exonic	Tdrd1	frameshift deletion	"Tdrd1:NM_001002241:exon16:c.2296delT:p.S768Qfs*9,Tdrd1:NM_001002238:exon17:c.2296delT:p.S768Qfs*9,Tdrd1:NM_001002240:exon17:c.2296delT:p.S768Qfs*9,Tdrd1:NM_031387:exon17:c.2296delT:p.S768Qfs*9"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	118	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.588653454	2	0.9982342	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M8	chr19	59300736	12A2p6	cell line	sgMsh2	59300736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	417	390	53	0.135897436	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.A2231G:p.Y744C	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	1.05E-09	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	254	26	3	0.115384615	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9419292	GAT	synonymous	NA	NA	NA	NA
M8	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.335	95	102	21	0.205882353	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M8	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	285	109	14	0.128440367	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.992201	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M8	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	144	158	47	0.297468354	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	154	13	1	0.076923077	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	5919456	12A2p6	cell line	sgMsh2	5919456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	207	12	4	0.333333333	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon7:c.A1345G:p.M449V	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr2	10440069	12A2p6	cell line	sgMsh2	10440069	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	198	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon7:c.T725G:p.I242S,Sfmbt2:NM_001369078:exon7:c.T725G:p.I242S,Sfmbt2:NM_177386:exon8:c.T725G:p.I242S"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	ATT	nonsynonymous	TTGG	9	TTGGTTGGT	NA
M8	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	155	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997997	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	234	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	65	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	AAG	synonymous	NA	NA	NA	NA
M8	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	86	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	139	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	22623815	12A2p6	cell line	sgMsh2	22623815	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	61	0	0	NA	exonic	Gad2	nonsynonymous SNV	Gad2:NM_008078:exon3:c.A263T:p.N88I	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	106	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9347939	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	96	38	12	0.315789474	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	154	38	0.246753247	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9907735	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	81	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	49	21	4	0.19047619	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9807438	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	25440824	12A2p6	cell line	sgMsh2	25440824	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	121	17	0	0	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon23:c.C3526A:p.L1176M,Abca2:NM_007379:exon23:c.C3523A:p.L1175M"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	86	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	25608194	12A2p6	cell line	sgMsh2	25608194	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	76	86	12	0.139534884	exonic	Rabl6	nonsynonymous SNV	Rabl6:NM_001024616:exon1:c.C49T:p.R17W	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.8931927	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	135	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	26395461	12A2p6	cell line	sgMsh2	26395461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	159	206	55	0.266990291	exonic	Pmpca	nonsynonymous SNV	Pmpca:NM_173180:exon13:c.T1448C:p.M483T	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9979852	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr2	28450558	12A2p6	cell line	sgMsh2	28450558	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	70	8	2	0.25	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.C199G:p.R67G,Ppp1r26:NM_001368159:exon4:c.C199G:p.R67G"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9921457	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	113	64	9	0.140625	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	240	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999949	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	80	1	0	0	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.155	81	37	6	0.162162162	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	8.11E-09	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M8	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	108	32	3	0.09375	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9946172	AAC	synonymous	NA	NA	NA	NA
M8	chr2	29872892	12A2p6	cell line	sgMsh2	29872892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	79	4	1	0.25	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon5:c.A637G:p.T213A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	29992651	12A2p6	cell line	sgMsh2	29992651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	143	165	32	0.193939394	exonic	Sptan1	synonymous SNV	"Sptan1:NM_001177667:exon12:c.T1476C:p.N492N,Sptan1:NM_001177668:exon12:c.T1476C:p.N492N,Sptan1:NM_001309460:exon12:c.T1476C:p.N492N,Sptan1:NM_001369325:exon12:c.T1476C:p.N492N"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	ATG	synonymous	NA	NA	NA	NA
M8	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	87	28	7	0.25	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.543	73	116	64	0.551724138	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	30822432	12A2p6	cell line	sgMsh2	30822432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	82	118	37	0.313559322	exonic	Ntmt1	synonymous SNV	"Ntmt1:NM_001356433:exon4:c.C486T:p.I162I,Ntmt1:NM_001356434:exon4:c.C396T:p.I132I,Ntmt1:NM_001356435:exon4:c.C222T:p.I74I,Ntmt1:NM_001356437:exon4:c.C222T:p.I74I,Ntmt1:NM_170592:exon4:c.C486T:p.I162I,Ntmt1:NM_001356436:exon5:c.C222T:p.I74I"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8184005	TCA	synonymous	NA	NA	NA	NA
M8	chr2	30828146	12A2p6	cell line	sgMsh2	30828146	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	22	25	6	0.24	exonic	Asb6	nonsynonymous SNV	Asb6:NM_133346:exon1:c.A41G:p.Y14C	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9406209	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	186	113	27	0.238938053	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	74	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9749798	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	32237505	12A2p6	cell line	sgMsh2	32237505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	92	43	10	0.23255814	exonic	Pomt1	nonsynonymous SNV	Pomt1:NM_145145:exon2:c.C182T:p.A61V	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	256	671	136	0.202682563	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999951	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	213	116	19	0.163793103	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999837	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	132	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9987287	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	82	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	CAC	synonymous	NA	NA	NA	NA
M8	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	80	36	7	0.194444444	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CAT	synonymous	NA	NA	NA	NA
M8	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	113	226	39	0.172566372	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	32780745	12A2p6	cell line	sgMsh2	32780745	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	79	2	0	0	exonic	Cfap157	nonsynonymous SNV	Cfap157:NM_025619:exon3:c.A490G:p.T164A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9508268	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	34945482	12A2p6	cell line	sgMsh2	34945482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	87	3	0	0	exonic	Traf1	synonymous SNV	"Traf1:NM_001326601:exon9:c.A927G:p.S309S,Traf1:NM_009421:exon10:c.A927G:p.S309S"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CTG	synonymous	NA	NA	NA	NA
M8	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	233	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999931	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	35085337	12A2p6	cell line	sgMsh2	35085337	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	178	0	0	NA	exonic	AI182371	frameshift deletion	"AI182371:NM_001243102:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_001243103:exon9:c.849delA:p.K283Nfs*21,AI182371:NM_001379434:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_178885:exon9:c.849delA:p.K283Nfs*21"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	134	13	4	0.307692308	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GAG	synonymous	NA	NA	NA	NA
M8	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	70	28	7	0.25	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9921457	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M8	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	94	64	11	0.171875	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	185	73	17	0.232876712	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	AAC	nonsynonymous	A	5	AAAAA	NA
M8	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	164	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.227	197	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
M8	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	121	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M8	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	72	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	GTG	synonymous	NA	NA	NA	NA
M8	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	72	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	GAG	synonymous	NA	NA	NA	NA
M8	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	134	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GAT	synonymous	NA	NA	NA	NA
M8	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.272	93	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8	chr2	44116662	12A2p6	cell line	sgMsh2	44116662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	167	0	0	NA	exonic	Arhgap15	nonsynonymous SNV	"Arhgap15:NM_001364029:exon8:c.T655C:p.F219L,Arhgap15:NM_001301831:exon9:c.T790C:p.F264L,Arhgap15:NM_153820:exon9:c.T790C:p.F264L,Arhgap15:NM_001301832:exon10:c.T385C:p.F129L"	2qB	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998808	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	108	204	53	0.259803922	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984723	AAA	synonymous	A	5	AAAAA	NA
M8	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	328	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	75	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	156	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998082	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	59	107	20	0.186915888	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	213	1	0	0	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999837	ACT	synonymous	NA	NA	NA	NA
M8	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	146	4	0	0	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M8	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	194	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9667498	GTT	synonymous	NA	NA	NA	NA
M8	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.265	210	8	0	0	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.261	209	7	0	0	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M8	chr2	65707306	12A2p6	cell line	sgMsh2	65707306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	211	2	0	0	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon13:c.A2098G:p.T700A,Scn2a:NM_001346679:exon13:c.A2098G:p.T700A,Scn2a:NM_001346680:exon13:c.A2098G:p.T700A"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999822	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	66188264	12A2p6	cell line	sgMsh2	66188264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	63	15	0.238095238	exonic	Ttc21b	synonymous SNV	"Ttc21b:NM_001047604:exon27:c.A3798G:p.A1266A,Ttc21b:NM_001290669:exon27:c.A3798G:p.A1266A"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996913	CTG	synonymous	NA	NA	NA	NA
M8	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	179	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	125	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr2	66689647	12A2p6	cell line	sgMsh2	66689647	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	87	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon18:c.C2912T:p.A971V	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9818012	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	67508658	12A2p6	cell line	sgMsh2	67508658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	331	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.T1242C:p.I414I,Xirp2:NM_001083919:exon7:c.T1242C:p.I414I"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	TTC	synonymous	NA	NA	NA	NA
M8	chr2	67508701	12A2p6	cell line	sgMsh2	67508701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	398	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T1285C:p.F429L,Xirp2:NM_001083919:exon7:c.T1285C:p.F429L"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.46E-09	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.258	274	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr2	67512485	12A2p6	cell line	sgMsh2	67512485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	209	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T5069C:p.I1690T,Xirp2:NM_001083919:exon7:c.T5069C:p.I1690T"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999806	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	302	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	69220863	12A2p6	cell line	sgMsh2	69220863	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	216	0	0	NA	exonic	G6pc2	nonsynonymous SNV	"G6pc2:NM_001289857:exon2:c.A299C:p.Q100P,G6pc2:NM_021331:exon2:c.A299C:p.Q100P"	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999857	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	332	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	TAT	synonymous	NA	NA	NA	NA
M8	chr2	73272071	12A2p6	cell line	sgMsh2	73272071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	135	0	0	NA	exonic	Sp9	nonsynonymous SNV	Sp9:NM_001005343:exon1:c.A1G:p.M1V	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9990454	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	32	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9606517	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	120	5	2	0.4	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AGC	synonymous	NA	NA	NA	NA
M8	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	133	133	37	0.278195489	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr2	76711612	12A2p6	cell line	sgMsh2	76711612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	199	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.C76048T:p.R25350C,Ttn:NM_011652:exon307:c.C95791T:p.R31931C,Ttn:NM_001385708:exon344:c.C101623T:p.R33875C"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	76752059	12A2p6	cell line	sgMsh2	76752059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	275	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A43508G:p.N14503S,Ttn:NM_011652:exon275:c.A63251G:p.N21084S,Ttn:NM_001385708:exon312:c.A69083G:p.N23028S"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	76755617	12A2p6	cell line	sgMsh2	76755617	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	304	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon148:c.C40788A:p.T13596T,Ttn:NM_011652:exon269:c.C60531A:p.T20177T,Ttn:NM_001385708:exon306:c.C66363A:p.T22121T"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AGG	synonymous	NA	NA	NA	NA
M8	chr2	76841091	12A2p6	cell line	sgMsh2	76841091	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	93	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_011652:exon150:c.31497delA:p.G10500Dfs*30,Ttn:NM_001385708:exon154:c.34617delA:p.G11540Dfs*30"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr2	76894297	12A2p6	cell line	sgMsh2	76894297	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	224	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon66:c.A16370G:p.E5457G,Ttn:NM_001385708:exon68:c.A19427G:p.E6476G"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	188	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	217	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-3197272-82054155	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999863	TAT	synonymous	NA	NA	NA	NA
M8	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	120	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9960716	CTA	synonymous	NA	NA	NA	NA
M8	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	253	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.5516377	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	756	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.9999497	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M8	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	291	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	3.68E-08	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	84368591	12A2p6	cell line	sgMsh2	84368591	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	271	11	1	0.090909091	exonic	Calcrl	synonymous SNV	Calcrl:NM_018782:exon9:c.T453C:p.S151S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.9891263	TAG	synonymous	NA	NA	NA	NA
M8	chr2	84957700	12A2p6	cell line	sgMsh2	84957700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	183	80	24	0.3	exonic	Slc43a3	synonymous SNV	Slc43a3:NM_021398:exon13:c.T1425C:p.L475L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	2	0.9997246	TTG	synonymous	NA	NA	NA	NA
M8	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	291	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.674797862	2	0.9999893	GTG	synonymous	NA	NA	NA	NA
M8	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	570	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	1.01E-09	AGG	synonymous	NA	NA	NA	NA
M8	chr2	85721983	12A2p6	cell line	sgMsh2	85721983	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	358	0	0	NA	exonic	Olfr1009	nonsynonymous SNV	Olfr1009:NM_146572:exon1:c.C577T:p.R193W	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9998634	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	508	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9999999	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	383	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	2.87E-08	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	85841720	12A2p6	cell line	sgMsh2	85841720	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	178	0	0	NA	exonic	Olfr1019	stopgain	Olfr1019:NM_147015:exon1:c.C70T:p.Q24X	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9809062	TGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	85849688	12A2p6	cell line	sgMsh2	85849688	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	551	0	0	NA	exonic	Olfr1020	nonsynonymous SNV	Olfr1020:NM_146580:exon1:c.T235G:p.S79A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.612582456	2	1.00E-09	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	86042013	12A2p6	cell line	sgMsh2	86042013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	614	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.C697T:p.R233C	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.9989883	GCG	nonsynonymous	AGGC	8	AGGCAGGC	NA
M8	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	568	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	1.00E-09	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr2	86356297	12A2p6	cell line	sgMsh2	86356297	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	240	0	0	NA	exonic	Olfr1056	frameshift deletion	Olfr1056:NM_147018:exon1:c.84delT:p.F28Lfs*17	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr2	86356361	12A2p6	cell line	sgMsh2	86356361	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	204	0	0	NA	exonic	Olfr1056	nonsynonymous SNV	Olfr1056:NM_147018:exon1:c.C20A:p.S7Y	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	0.9998511	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	533	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9977484	AAA	synonymous	NA	NA	NA	NA
M8	chr2	87021776	12A2p6	cell line	sgMsh2	87021776	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	223	0	0	NA	exonic	Olfr1104	frameshift deletion	Olfr1104:NM_146767:exon1:c.767delT:p.F256Sfs*16	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	194	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9904102	AAA	nonsynonymous	A	6	AAAAAA	NA
M8	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	324	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9996157	TAG	synonymous	NA	NA	NA	NA
M8	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	357	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9994186	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr2	87388238	12A2p6	cell line	sgMsh2	87388238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	513	0	0	NA	exonic	Olfr1122	synonymous SNV	Olfr1122:NM_147031:exon1:c.T532C:p.L178L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.9997097	TTT	synonymous	NA	NA	NA	NA
M8	chr2	87508605	12A2p6	cell line	sgMsh2	87508605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	264	0	0	NA	exonic	Pramel6	nonsynonymous SNV	"Pramel6:NM_001356546:exon2:c.A148G:p.K50E,Pramel6:NM_178249:exon2:c.A148G:p.K50E,Pramel6:NM_001356544:exon3:c.A148G:p.K50E,Pramel6:NM_001356545:exon3:c.A148G:p.K50E"	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9510731	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	338	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	2	0.8907316	AGG	synonymous	NA	NA	NA	NA
M8	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.137	518	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	NA	NA	CAT	frameshift	NA	NA	NA	1
M8	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	541	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.87174	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	344	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.689155263	2	0.9999963	AAT	synonymous	NA	NA	NA	NA
M8	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	519	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9999997	TAC	synonymous	TACT	8	TACTTACT	NA
M8	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	463	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.9844649	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	278	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9650511	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	390	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54079545	2	1.01E-09	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	728	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.804014474	2	0.9965213	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	355	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.9975422	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	571	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9999998	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	372	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.9997576	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	672	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.9995552	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	491	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.998397	CTG	synonymous	NA	NA	NA	NA
M8	chr2	88391594	12A2p6	cell line	sgMsh2	88391594	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	459	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.A346C:p.M116L	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	2	1.03E-08	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	245	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9999981	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M8	chr2	88412518	12A2p6	cell line	sgMsh2	88412518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	257	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.A139G:p.T47A	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9462723	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	208	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	2	0.6444362	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	363	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9995024	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	670	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	1	CTA	synonymous	ACT	8	ACTACTAC	NA
M8	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	495	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	1.04E-09	AGG	synonymous	NA	NA	NA	NA
M8	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	446	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.9989355	TAA	synonymous	NA	NA	NA	NA
M8	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	429	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	2	0.9589375	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	89657042	12A2p6	cell line	sgMsh2	89657042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	617	0	0	NA	exonic	Olfr1250	nonsynonymous SNV	Olfr1250:NM_146965:exon1:c.T398C:p.I133T	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.737013268	2	0.9999999	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	304	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9996845	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	90015799	12A2p6	cell line	sgMsh2	90015799	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	469	0	0	NA	exonic	Olfr1263	frameshift deletion	Olfr1263:NM_146794:exon1:c.868delA:p.R291Gfs*2	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	321	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9993426	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M8	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	363	224	26	0.116071429	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.998716	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	371	503	85	0.168986083	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9657004	TTG	synonymous	NA	NA	NA	NA
M8	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	443	62	17	0.274193548	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.78E-09	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	379	79	9	0.113924051	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9994609	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	91931373	12A2p6	cell line	sgMsh2	91931373	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.453	85	1	0	0	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M8	chr2	92380460	12A2p6	cell line	sgMsh2	92380460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	247	28	9	0.321428571	exonic	Pex16	nonsynonymous SNV	Pex16:NM_145122:exon10:c.T938C:p.V313A	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.492937445	2	0.9998762	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	89	60	10	0.166666667	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82235500-94430128	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8144925	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	97630892	12A2p6	cell line	sgMsh2	97630892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	151	0	0	NA	exonic	Lrrc4c	nonsynonymous SNV	"Lrrc4c:NM_001289744:exon2:c.T1862C:p.V621A,Lrrc4c:NM_178725:exon3:c.T1862C:p.V621A,Lrrc4c:NM_001363049:exon4:c.T1862C:p.V621A,Lrrc4c:NM_001289743:exon7:c.T1862C:p.V621A,Lrrc4c:NM_001289742:exon8:c.T1862C:p.V621A,Lrrc4c:NM_001363048:exon8:c.T1862C:p.V621A,Lrrc4c:NM_001363047:exon9:c.T1862C:p.V621A"	2qE1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	309	147	32	0.217687075	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9996396	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	103768886	12A2p6	cell line	sgMsh2	103768886	G	A	SNV	Mutect2;Vardict	2	0.051	83	684	0	0	exonic	Caprin1	nonsynonymous SNV	"Caprin1:NM_001111289:exon16:c.C1912T:p.R638C,Caprin1:NM_001111290:exon16:c.C1885T:p.R629C,Caprin1:NM_001111292:exon16:c.C1912T:p.R638C,Caprin1:NM_001111291:exon17:c.C1912T:p.R638C,Caprin1:NM_016739:exon17:c.C1912T:p.R638C"	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.244075822	3	0.9998739	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	316	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr2	109306914	12A2p6	cell line	sgMsh2	109306914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	180	48	12	0.25	exonic	Kif18a	nonsynonymous SNV	Kif18a:NM_139303:exon11:c.A1490G:p.K497R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	AAG	nonsynonymous	AAAG	10	AAAGAAAGAA	NA
M8	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	90	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	CAT	synonymous	NA	NA	NA	NA
M8	chr2	111227991	12A2p6	cell line	sgMsh2	111227991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	351	0	0	NA	exonic	A26c3	synonymous SNV	"A26c3:NM_001378593:exon3:c.T456C:p.A152A,A26c3:NM_026248:exon3:c.T456C:p.A152A"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.27E-08	CAG	synonymous	NA	NA	NA	NA
M8	chr2	111315817	12A2p6	cell line	sgMsh2	111315817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	476	0	0	NA	exonic	Olfr1280	nonsynonymous SNV	Olfr1280:NM_146908:exon1:c.G337A:p.V113M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.19E-09	GGT	nonsynonymous	NA	NA	NA	NA
M8	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.259	814	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	717	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M8	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	487	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.12E-09	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M8	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	318	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	289	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	AAT	synonymous	NA	NA	NA	NA
M8	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	310	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	306	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	126	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	AAC	nonsynonymous	A	5	AAAAA	NA
M8	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	119	42	8	0.19047619	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	208	165	38	0.23030303	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.999603	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	134	65	18	0.276923077	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	CAC	synonymous	NA	NA	NA	NA
M8	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	62	15	3	0.2	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9608501	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	39	2	1	0.5	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9643105	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	163	40	2	0.05	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	84	34	4	0.117647059	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.631725658	2	0.9526764	TAT	synonymous	NA	NA	NA	NA
M8	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	60	13	5	0.384615385	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	1	0.6014322	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	55	19	6	0.315789474	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	121	78	23	0.294871795	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M8	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	153	120	0	0	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	271	141	36	0.255319149	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999987	AAC	synonymous	NA	NA	NA	NA
M8	chr2	120668076	12A2p6	cell line	sgMsh2	120668076	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	175	5	2	0.4	exonic	Stard9	synonymous SNV	Stard9:NM_001370940:exon7:c.A520C:p.R174R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	AAG	synonymous	NA	NA	NA	NA
M8	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	110	12	3	0.25	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	181	13	3	0.230769231	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999349	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	121208121	12A2p6	cell line	sgMsh2	121208121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	88	49	9	0.183673469	exonic	Trp53bp1	nonsynonymous SNV	"Trp53bp1:NM_001290830:exon20:c.T4085C:p.V1362A,Trp53bp1:NM_013735:exon21:c.T4235C:p.V1412A"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	153	21	7	0.333333333	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	121342985	12A2p6	cell line	sgMsh2	121342985	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	71	10	0	0	exonic	Ppip5k1	synonymous SNV	Ppip5k1:NM_178795:exon12:c.A1302G:p.K434K	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	GTT	synonymous	NA	NA	NA	NA
M8	chr2	122337637	12A2p6	cell line	sgMsh2	122337637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	145	0	0	NA	exonic	Duox1	nonsynonymous SNV	Duox1:NM_001099297:exon24:c.T3242C:p.V1081A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996913	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	125383693	12A2p6	cell line	sgMsh2	125383693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	101	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon14:c.T1638C:p.G546G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	GAC	synonymous	NA	NA	NA	NA
M8	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	145	7	2	0.285714286	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996913	TCC	nonsynonymous	NA	NA	NA	NA
M8	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	91	5	0	0	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	144	17	4	0.235294118	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	ATA	synonymous	NA	NA	NA	NA
M8	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	253	93	6	0.064516129	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999971	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	122	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	TTA	synonymous	NA	NA	NA	NA
M8	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	219	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999874	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	193	6	0	0	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999613	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr2	129113650	12A2p6	cell line	sgMsh2	129113650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	37	37	13	0.351351351	exonic	Polr1b	nonsynonymous SNV	Polr1b:NM_009086:exon9:c.T1480C:p.W494R	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9680598	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	181	91	16	0.175824176	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999349	GTA	synonymous	NA	NA	NA	NA
M8	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.288	224	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr2	130437919	12A2p6	cell line	sgMsh2	130437919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	144	75	10	0.133333333	exonic	Vps16	synonymous SNV	Vps16:NM_030559:exon3:c.A147G:p.L49L	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9887212	TAC	synonymous	NA	NA	NA	NA
M8	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	113	20	3	0.15	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	129	42	8	0.19047619	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993835	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	111	29	0.261261261	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983345	ACC	nonsynonymous	NA	NA	NA	NA
M8	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	69	86	11	0.127906977	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9918014	ATT	synonymous	NA	NA	NA	NA
M8	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	62	75	20	0.266666667	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9713767	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	118	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	180	49	8	0.163265306	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr2	135364772	12A2p6	cell line	sgMsh2	135364772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	37	2	0	0	exonic	Plcb1	synonymous SNV	"Plcb1:NM_001145830:exon26:c.A2715G:p.V905V,Plcb1:NM_019677:exon26:c.A2715G:p.V905V"	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9680598	TAG	synonymous	NA	NA	NA	NA
M8	chr2	136550160	12A2p6	cell line	sgMsh2	136550160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	130	1	0	0	exonic	Ankef1	nonsynonymous SNV	Ankef1:NM_175667:exon7:c.A1268G:p.K423R	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	AAG	nonsynonymous	A	5	AAAAA	NA
M8	chr2	140120680	12A2p6	cell line	sgMsh2	140120680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	152	213	67	0.314553991	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon14:c.A2470G:p.M824V	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr2	142702654	12A2p6	cell line	sgMsh2	142702654	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	191	50	13	0.26	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon22:c.A3452C:p.N1151T,Kif16b:NM_001355123:exon23:c.A3485C:p.N1162T"	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999578	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr2	143813612	12A2p6	cell line	sgMsh2	143813612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	91	0	0	NA	exonic	Pcsk2	nonsynonymous SNV	Pcsk2:NM_008792:exon12:c.G1715A:p.G572E	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	148700454	12A2p6	cell line	sgMsh2	148700454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	3	1	0.333333333	exonic	Napb	synonymous SNV	Napb:NM_019632:exon8:c.C585T:p.N195N	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9845327	GGT	synonymous	NA	NA	NA	NA
M8	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	65	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	152008019	12A2p6	cell line	sgMsh2	152008019	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	43	1	0	0	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon5:c.G1244A:p.R415Q,Slc52a3:NM_027172:exon5:c.G1244A:p.R415Q"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.8962792	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	152318786	12A2p6	cell line	sgMsh2	152318786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	78	85	20	0.235294118	exonic	Rbck1	nonsynonymous SNV	"Rbck1:NM_001083921:exon10:c.G1229A:p.R410K,Rbck1:NM_001355282:exon11:c.G779A:p.R260K,Rbck1:NM_019705:exon11:c.G1229A:p.R410K"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	152343156	12A2p6	cell line	sgMsh2	152343156	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	58	487	147	0.301848049	exonic	Trib3	synonymous SNV	Trib3:NM_175093:exon2:c.T172C:p.L58L	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	AAG	synonymous	NA	NA	NA	NA
M8	chr2	152374250	12A2p6	cell line	sgMsh2	152374250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	154	1	1	1	exonic	Nrsn2	nonsynonymous SNV	"Nrsn2:NM_001009948:exon2:c.A32G:p.H11R,Nrsn2:NM_001370750:exon2:c.A32G:p.H11R"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	156	66	16	0.242424242	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998082	CTG	synonymous	NA	NA	NA	NA
M8	chr2	153144474	12A2p6	cell line	sgMsh2	153144474	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	215	2	1	0.5	exonic	Hck	nonsynonymous SNV	"Hck:NM_001172117:exon11:c.G1079T:p.R360M,Hck:NM_010407:exon11:c.G1142T:p.R381M"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999985	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	139	10	6	0.6	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	GCT	synonymous	NA	NA	NA	NA
M8	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	81	566	131	0.231448763	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M8	chr2	154884366	12A2p6	cell line	sgMsh2	154884366	-	T	Insertion	Strelka2;Vardict	2	0.1925	161	347	1	0.002881844	exonic	Eif2s2	frameshift insertion	Eif2s2:NM_026030:exon4:c.377dupA:p.K127Efs*5	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.921266584	NA	NA	TCT	frameshift	TTC	14	TTCTTCTTTTTCTT	1
M8	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	126	162	38	0.234567901	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	ATA	synonymous	NA	NA	NA	NA
M8	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	41	26	7	0.269230769	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	1	0.7015363	GTT	synonymous	NA	NA	NA	NA
M8	chr2	155834529	12A2p6	cell line	sgMsh2	155834529	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	142	0	0	NA	exonic	Fam83c	nonsynonymous SNV	Fam83c:NM_027788:exon1:c.C182T:p.A61V	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	97	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.259	144	102	25	0.245098039	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	411	94	27	0.287234043	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.11E-09	TAT	synonymous	NA	NA	NA	NA
M8	chr2	157561705	12A2p6	cell line	sgMsh2	157561705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	28	1	0	0	exonic	Nnat	synonymous SNV	"Nnat:NM_001291128:exon3:c.A324G:p.P108P,Nnat:NM_001291129:exon3:c.A312G:p.P104P"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9535644	CAG	synonymous	NA	NA	NA	NA
M8	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	185	41	14	0.341463415	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9990169	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M8	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	67	58	18	0.310344828	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	GCG	synonymous	NA	NA	NA	NA
M8	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	169	105	27	0.257142857	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	48	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9799097	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	249	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9999828	AGC	synonymous	NA	NA	NA	NA
M8	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	228	88	18	0.204545455	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999915	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M8	chr2	165397272	12A2p6	cell line	sgMsh2	165397272	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	58	0	0	NA	exonic	Ocstamp	synonymous SNV	Ocstamp:NM_029021:exon2:c.C993A:p.A331A	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	AGG	synonymous	NA	NA	NA	NA
M8	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	81	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	306	321	71	0.221183801	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	168231377	12A2p6	cell line	sgMsh2	168231377	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	27	4	1	0.25	exonic	Mocs3	nonsynonymous SNV	Mocs3:NM_001160330:exon1:c.T743A:p.V248E	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9516111	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	86	44	9	0.204545455	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9385912	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr2	172427589	12A2p6	cell line	sgMsh2	172427589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	174	0	0	NA	exonic	Cass4	nonsynonymous SNV	"Cass4:NM_001080820:exon5:c.T1590G:p.D530E,Cass4:NM_001276422:exon5:c.T1596G:p.D532E,Cass4:NM_001276423:exon5:c.T1590G:p.D530E,Cass4:NM_001379465:exon5:c.T1596G:p.D532E,Cass4:NM_001379466:exon5:c.T1596G:p.D532E,Cass4:NM_001379467:exon5:c.T1590G:p.D530E"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.961178	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	180	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	105	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	1	0.9554837	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	92	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	39	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.970629	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr2	174761546	12A2p6	cell line	sgMsh2	174761546	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	59	0	0	NA	exonic	Edn3	nonsynonymous SNV	Edn3:NM_007903:exon2:c.G86T:p.G29V	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	111	29	9	0.310344828	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	CTA	synonymous	NA	NA	NA	NA
M8	chr2	180464112	12A2p6	cell line	sgMsh2	180464112	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	81	6	1	0.166666667	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon2:c.G86A:p.G29E,Slco4a1:NM_148933:exon2:c.G86A:p.G29E"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	110	88	28	0.318181818	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	180675363	12A2p6	cell line	sgMsh2	180675363	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	150	22	4	0.181818182	exonic	Dido1	synonymous SNV	"Dido1:NM_001291433:exon7:c.A1650T:p.A550A,Dido1:NM_175551:exon7:c.A1650T:p.A550A,Dido1:NM_177852:exon7:c.A1650T:p.A550A"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9994606	GTG	synonymous	GAAG	8	GAAGGAAG	NA
M8	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	141	82	18	0.219512195	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	81	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	GCT	synonymous	NA	NA	NA	NA
M8	chr2	180979220	12A2p6	cell line	sgMsh2	180979220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	76	171	46	0.269005848	exonic	Arfgap1	nonsynonymous SNV	"Arfgap1:NM_001177710:exon9:c.A608G:p.Q203R,Arfgap1:NM_001177706:exon10:c.A767G:p.Q256R,Arfgap1:NM_001177708:exon10:c.A767G:p.Q256R,Arfgap1:NM_001177709:exon10:c.A767G:p.Q256R,Arfgap1:NM_001363037:exon10:c.A638G:p.Q213R,Arfgap1:NM_001177707:exon11:c.A767G:p.Q256R,Arfgap1:NM_001363035:exon11:c.A797G:p.Q266R,Arfgap1:NM_145760:exon11:c.A767G:p.Q256R,Arfgap1:NM_001363036:exon12:c.A797G:p.Q266R,Arfgap1:NM_001374670:exon12:c.A797G:p.Q266R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9901129	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	63	21	2	0.095238095	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	ATG	synonymous	NA	NA	NA	NA
M8	chr2	181570146	12A2p6	cell line	sgMsh2	181570146	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	261	84	18	0.214285714	exonic	Uckl1	nonsynonymous SNV	"Uckl1:NM_001379005:exon11:c.A1169G:p.Y390C,Uckl1:NM_026765:exon11:c.A1166G:p.Y389C"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr2	181655558	12A2p6	cell line	sgMsh2	181655558	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	120	68	18	0.264705882	exonic	Prpf6	nonsynonymous SNV	Prpf6:NM_133701:exon21:c.T2810G:p.I937S	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	ATC	nonsynonymous	A	5	AAAAA	NA
M8	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	219	7	0	0	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9999707	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr3	5399531	12A2p6	cell line	sgMsh2	5399531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	127	9	5	0.555555556	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.T4826C:p.M1609T,Zfhx4:NM_030708:exon10:c.T4748C:p.M1583T"	3qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	124	6	3	0.5	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M8	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	197	15	2	0.133333333	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	198	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	205	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9998517	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	133	31	7	0.225806452	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	AAG	synonymous	NA	NA	NA	NA
M8	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	112	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	19134875	12A2p6	cell line	sgMsh2	19134875	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	206	124	7	0.056451613	exonic	Armc1	stopgain	"Armc1:NM_001357689:exon6:c.C625T:p.Q209X,Armc1:NM_028840:exon6:c.C625T:p.Q209X"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.205789419	3	1.00E-09	TGA	nonsynonymous	NA	NA	NA	NA
M8	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	130	32	9	0.28125	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.09615598	ACA	synonymous	NA	NA	NA	NA
M8	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	135	104	22	0.211538462	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	AAT	nonsynonymous	A	5	AAAAA	NA
M8	chr3	27469004	12A2p6	cell line	sgMsh2	27469004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	135	68	15	0.220588235	exonic	Fndc3b	synonymous SNV	"Fndc3b:NM_173182:exon13:c.A1425G:p.G475G,Fndc3b:NM_001356953:exon14:c.A1425G:p.G475G"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.862633	TTC	synonymous	NA	NA	NA	NA
M8	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	274	18	10	0.555555556	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr3	30800215	12A2p6	cell line	sgMsh2	30800215	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	168	268	72	0.268656716	exonic	Sec62	nonsynonymous SNV	"Sec62:NM_001357528:exon2:c.G121A:p.G41S,Sec62:NM_027016:exon2:c.G121A:p.G41S"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9980431	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	155	144	29	0.201388889	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9996359	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	87	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.7789482	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	35897813	12A2p6	cell line	sgMsh2	35897813	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	201	4	0	0	exonic	Dcun1d1	nonsynonymous SNV	"Dcun1d1:NM_001205361:exon5:c.T583G:p.L195V,Dcun1d1:NM_001205362:exon5:c.T538G:p.L180V,Dcun1d1:NM_033623:exon5:c.T538G:p.L180V"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	169	131	16	0.122137405	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	TTG	synonymous	NA	NA	NA	NA
M8	chr3	36568646	12A2p6	cell line	sgMsh2	36568646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	111	32	5	0.15625	exonic	Ccna2	nonsynonymous SNV	Ccna2:NM_009828:exon5:c.A706G:p.M236V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	264	28	11	0.392857143	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999982	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	37439317	12A2p6	cell line	sgMsh2	37439317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	166	57	16	0.280701754	exonic	Spata5	nonsynonymous SNV	"Spata5:NM_001163511:exon9:c.T1675C:p.Y559H,Spata5:NM_001310473:exon9:c.T1675C:p.Y559H,Spata5:NM_021343:exon9:c.T1672C:p.Y558H"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	149	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	TGC	synonymous	NA	NA	NA	NA
M8	chr3	45381266	12A2p6	cell line	sgMsh2	45381266	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	22	0	0	NA	exonic	Pcdh10	nonsynonymous SNV	"Pcdh10:NM_001098170:exon1:c.G2014T:p.A672S,Pcdh10:NM_001098171:exon1:c.G2014T:p.A672S,Pcdh10:NM_001098172:exon1:c.G2014T:p.A672S,Pcdh10:NM_011043:exon1:c.G2014T:p.A672S"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9406209	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr3	46446486	12A2p6	cell line	sgMsh2	46446486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	221	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.A722G:p.E241G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	95	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	172	57	14	0.245614035	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999904	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	169	130	29	0.223076923	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	54782403	12A2p6	cell line	sgMsh2	54782403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	35	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon2:c.A43G:p.S15G	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9105969	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	189	101	25	0.247524752	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	85	116	19	0.163793103	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr3	55681028	12A2p6	cell line	sgMsh2	55681028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	128	50	15	0.3	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon48:c.A7289G:p.Y2430C	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	GTA	nonsynonymous	GGTA	9	GGTAGGTAG	NA
M8	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	62	28	13	0.464285714	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M8	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	259	51	4	0.078431373	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9856651	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	201	34	8	0.235294118	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.315	81	186	7	0.037634409	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr3	59115071	12A2p6	cell line	sgMsh2	59115071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	211	0	0	NA	exonic	P2ry14	nonsynonymous SNV	"P2ry14:NM_001287120:exon2:c.T967C:p.S323P,P2ry14:NM_001287122:exon2:c.T967C:p.S323P,P2ry14:NM_001287123:exon2:c.T967C:p.S323P,P2ry14:NM_001287124:exon2:c.T994C:p.S332P,P2ry14:NM_133200:exon2:c.T967C:p.S323P,P2ry14:NM_001008497:exon3:c.T967C:p.S323P,P2ry14:NM_001287119:exon3:c.T967C:p.S323P,P2ry14:NM_001287121:exon3:c.T967C:p.S323P"	3qD	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	1	0.9619754	GAA	nonsynonymous	TTTTGG	12	TTTTGGTTTTGG	NA
M8	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	196	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999966	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	62603684	12A2p6	cell line	sgMsh2	62603684	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	44	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon1:c.A893C:p.Q298P,Gpr149:NM_177346:exon1:c.A893C:p.Q298P"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9359594	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr3	67449726	12A2p6	cell line	sgMsh2	67449726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	175	147	34	0.231292517	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon9:c.A1131G:p.E377E	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	AAC	synonymous	NA	NA	NA	NA
M8	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	330	35	9	0.257142857	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M8	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	81	39	3	0.076923077	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.303	88	215	0	0	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M8	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	251	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999968	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	96	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	231	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999925	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	116	7	0	0	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr3	82359959	12A2p6	cell line	sgMsh2	82359959	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	197	9	4	0.444444444	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon3:c.G145A:p.D49N,Map9:NM_001356457:exon3:c.G145A:p.D49N"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	TGA	nonsynonymous	NA	NA	NA	NA
M8	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	249	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999966	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	180	50	8	0.16	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9977169	AAT	synonymous	NA	NA	NA	NA
M8	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	223	55	10	0.181818182	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999894	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M8	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	238	21	6	0.285714286	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999945	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr3	86781589	12A2p6	cell line	sgMsh2	86781589	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	230	22	1	0.045454545	exonic	Lrba	nonsynonymous SNV	Lrba:NM_030695:exon57:c.G8493T:p.M2831I	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	87802537	12A2p6	cell line	sgMsh2	87802537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	67	0	0	NA	exonic	Insrr	nonsynonymous SNV	Insrr:NM_011832:exon3:c.A796G:p.T266A	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	88247514	12A2p6	cell line	sgMsh2	88247514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	83	0	0	NA	exonic	Rhbg	synonymous SNV	Rhbg:NM_021375:exon4:c.A582G:p.S194S	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	ATG	synonymous	NA	NA	NA	NA
M8	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	92	13	1	0.076923077	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8616372	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	72	1	1	1	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M8	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	72	103	21	0.203883495	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr3	89461933	12A2p6	cell line	sgMsh2	89461933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	128	119	17	0.142857143	exonic	Pmvk	synonymous SNV	"Pmvk:NM_026784:exon2:c.G147A:p.E49E,Pmvk:NM_027348:exon2:c.G84A:p.E28E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	AGG	synonymous	AGG	8	AGGAGGAG	NA
M8	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	109	38	5	0.131578947	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	74	435	117	0.268965517	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	214	54	12	0.222222222	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999844	AGC	synonymous	NA	NA	NA	NA
M8	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	206	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999779	TCA	nonsynonymous	NA	NA	NA	NA
M8	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	296	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999996	TAC	synonymous	NA	NA	NA	NA
M8	chr3	94389202	12A2p6	cell line	sgMsh2	94389202	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	100	46	5	0.108695652	exonic	Rorc	synonymous SNV	"Rorc:NM_001293734:exon4:c.C687T:p.C229C,Rorc:NM_011281:exon5:c.C750T:p.C250C"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	GCA	synonymous	NA	NA	NA	NA
M8	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	281	152	43	0.282894737	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999991	GTG	synonymous	NA	NA	NA	NA
M8	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	81	37	8	0.216216216	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CTT	nonsynonymous	T	5	TTTTT	NA
M8	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.231	73	132	32	0.242424242	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	182	284	75	0.264084507	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9710071	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	95172694	12A2p6	cell line	sgMsh2	95172694	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	15	2	0	0	exonic	Sema6c	synonymous SNV	"Sema6c:NM_011351:exon17:c.C2202T:p.G734G,Sema6c:NM_001272024:exon21:c.C2298T:p.G766G"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9212578	GCC	synonymous	NA	NA	NA	NA
M8	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	249	85	13	0.152941176	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9998322	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	255	82	16	0.195121951	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999949	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	95754372	12A2p6	cell line	sgMsh2	95754372	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	74	63	20	0.317460317	exonic	Tars2	nonsynonymous SNV	"Tars2:NM_001163617:exon2:c.G225T:p.K75N,Tars2:NM_001163618:exon2:c.G225T:p.K75N,Tars2:NM_001163619:exon2:c.G225T:p.K75N,Tars2:NM_027931:exon2:c.G225T:p.K75N"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	150	5	0	0	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	144	60	14	0.233333333	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.999182	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	96598470	12A2p6	cell line	sgMsh2	96598470	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	38	1	0	0	exonic	Ankrd34a	frameshift deletion	Ankrd34a:NM_001024851:exon2:c.989delA:p.K331Nfs*1	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	149	2	1	0.5	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	AAG	synonymous	NA	NA	NA	NA
M8	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	149	9	0	0	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	161	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	AGT	synonymous	NA	NA	NA	NA
M8	chr3	98884748	12A2p6	cell line	sgMsh2	98884748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	127	0	0	NA	exonic	Hao2	synonymous SNV	Hao2:NM_019545:exon3:c.A84G:p.E28E	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	CTT	synonymous	NA	NA	NA	NA
M8	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	82	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr3	101056598	12A2p6	cell line	sgMsh2	101056598	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	132	108	25	0.231481481	exonic	Ptgfrn	nonsynonymous SNV	Ptgfrn:NM_011197:exon6:c.C1697T:p.T566I	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	112	8	3	0.375	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8011959	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	394	223	57	0.255605381	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	7.49E-09	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	103761538	12A2p6	cell line	sgMsh2	103761538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	123	172	32	0.186046512	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon6:c.A1541G:p.N514S,Hipk1:NM_001301306:exon6:c.A1541G:p.N514S,Hipk1:NM_010432:exon6:c.A1541G:p.N514S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	49	15	2	0.133333333	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9807438	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	103915080	12A2p6	cell line	sgMsh2	103915080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	56	28	3	0.107142857	exonic	Rsbn1	synonymous SNV	"Rsbn1:NM_001356556:exon1:c.T630C:p.D210D,Rsbn1:NM_001356557:exon1:c.T630C:p.D210D,Rsbn1:NM_001356558:exon1:c.T630C:p.D210D,Rsbn1:NM_172684:exon1:c.T630C:p.D210D"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	ATC	synonymous	NA	NA	NA	NA
M8	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	126	2	1	0.5	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8416997	GGA	synonymous	NA	NA	NA	NA
M8	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	115	136	28	0.205882353	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	269	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	CTG	nonsynonymous	C	5	CCCCC	NA
M8	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	139	2	1	0.5	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr3	105981256	12A2p6	cell line	sgMsh2	105981256	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	165	12	2	0.166666667	exonic	Ovgp1	frameshift deletion	Ovgp1:NM_007696:exon9:c.927delA:p.K311Nfs*33	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	169	18	2	0.111111111	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	172	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9894567	GCT	synonymous	NA	NA	NA	NA
M8	chr3	107311516	12A2p6	cell line	sgMsh2	107311516	-	T	Insertion	Strelka2;Vardict	2	0.16	150	0	0	NA	exonic	Slc16a4	frameshift insertion	Slc16a4:NM_146136:exon9:c.1433dupT:p.V481Cfs*4	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	NA	NA	CCT	frameshift	T	8	TTTTTTTT	1
M8	chr3	107331352	12A2p6	cell line	sgMsh2	107331352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	120	76	12	0.157894737	exonic	Rbm15	nonsynonymous SNV	Rbm15:NM_001045807:exon1:c.A1729G:p.R577G	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	67	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.531223849	2	0.977428	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	235	10	2	0.2	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	36	10	0	0	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8603307	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	135	9	4	0.444444444	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	CTG	synonymous	NA	NA	NA	NA
M8	chr3	108427274	12A2p6	cell line	sgMsh2	108427274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	71	1337	247	0.18474196	exonic	Sars	nonsynonymous SNV	"Sars:NM_001204979:exon10:c.A1373G:p.E458G,Sars:NM_011319:exon11:c.A1445G:p.E482G"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	98	13	2	0.153846154	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	78	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	141	200	50	0.25	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	CCT	synonymous	NA	NA	NA	NA
M8	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	65	31	5	0.161290323	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	1	0.7425471	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	198	2	1	0.5	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr3	116687359	12A2p6	cell line	sgMsh2	116687359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	152	67	24	0.358208955	exonic	Slc35a3	nonsynonymous SNV	"Slc35a3:NM_144902:exon3:c.T254C:p.L85P,Slc35a3:NM_001362374:exon4:c.T254C:p.L85P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	162	34	7	0.205882353	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	165	88	26	0.295454545	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99987	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	188	3	1	0.333333333	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	161	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	CGA	synonymous	NA	NA	NA	NA
M8	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	189	1	0	0	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	CAC	synonymous	NA	NA	NA	NA
M8	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	235	24	3	0.125	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	120	10	0	0	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	246	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999961	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	136	147	30	0.204081633	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	155	409	96	0.234718826	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.995877	ATG	synonymous	NA	NA	NA	NA
M8	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	147	20	4	0.2	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	TAC	synonymous	NA	NA	NA	NA
M8	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	148	71	0	0	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr3	135551279	12A2p6	cell line	sgMsh2	135551279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	88	23	8	0.347826087	exonic	Manba	nonsynonymous SNV	Manba:NM_027288:exon12:c.A1702G:p.K568E	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	165	180	41	0.227777778	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99987	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	324	433	93	0.2147806	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9996157	AAA	nonsynonymous	A	5	AAAAA	NA
M8	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	176	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999192	CTC	synonymous	NA	NA	NA	NA
M8	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	277	52	5	0.096153846	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	320	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9995597	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	144957342	12A2p6	cell line	sgMsh2	144957342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	349	2	1	0.5	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon11:c.T1745C:p.I582T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	4.64E-08	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	157	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998163	GTT	synonymous	NA	NA	NA	NA
M8	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	95	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.8887288	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	151492368	12A2p6	cell line	sgMsh2	151492368	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	302	0	0	NA	exonic	Adgrl4	synonymous SNV	Adgrl4:NM_133222:exon3:c.T264G:p.G88G	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	GTT	synonymous	NA	NA	NA	NA
M8	chr3	152448842	12A2p6	cell line	sgMsh2	152448842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	178	123	31	0.25203252	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001346655:exon5:c.T226C:p.Y76H,Zzz3:NM_001355673:exon5:c.T1729C:p.Y577H,Zzz3:NM_001080755:exon6:c.T1729C:p.Y577H,Zzz3:NM_001287139:exon6:c.T1729C:p.Y577H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr3	153205566	12A2p6	cell line	sgMsh2	153205566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	93	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon5:c.T757C:p.Y253H	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9970812	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr3	153910760	12A2p6	cell line	sgMsh2	153910760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	205	341	71	0.208211144	exonic	Rabggtb	synonymous SNV	"Rabggtb:NM_001163479:exon1:c.T120C:p.H40H,Rabggtb:NM_011231:exon2:c.T264C:p.H88H,Rabggtb:NM_001163478:exon3:c.T240C:p.H80H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999977	CAT	synonymous	NA	NA	NA	NA
M8	chr3	154222839	12A2p6	cell line	sgMsh2	154222839	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	65	0	0	NA	exonic	Slc44a5	synonymous SNV	Slc44a5:NM_001081263:exon4:c.C237A:p.P79P	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	CCA	synonymous	C	5	CCCCC	NA
M8	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	499	94	22	0.234042553	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.07E-09	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	197	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	73	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	208	36	12	0.333333333	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999798	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	178	28	5	0.178571429	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	131	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9256208	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	212	181	56	0.309392265	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999983	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	224	81	6	0.074074074	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9916886	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	3871083	12A2p6	cell line	sgMsh2	3871083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	52	0	0	NA	exonic	Mos	synonymous SNV	Mos:NM_020021:exon1:c.T732A:p.A244A	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	GAG	synonymous	NA	NA	NA	NA
M8	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	109	95	28	0.294736842	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	11287568	12A2p6	cell line	sgMsh2	11287568	A	-	Deletion	Strelka2;Vardict	2	0.2951	61	62	4	0.064516129	exonic	Dpy19l4	frameshift deletion	Dpy19l4:NM_001081201:exon12:c.1238delT:p.F413Sfs*2	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
M8	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	279	141	35	0.24822695	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999991	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	14621237	12A2p6	cell line	sgMsh2	14621237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	109	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon2:c.G148A:p.D50N	4qA1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	234	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	AAG	synonymous	NA	NA	NA	NA
M8	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	189	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	91	35	4	0.114285714	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9949195	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	19627973	12A2p6	cell line	sgMsh2	19627973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	56	48	14	0.291666667	exonic	Wwp1	synonymous SNV	"Wwp1:NM_001276292:exon18:c.T1626G:p.G542G,Wwp1:NM_001355222:exon19:c.T1815G:p.G605G,Wwp1:NM_177327:exon19:c.T2019G:p.G673G"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	AAC	synonymous	NA	NA	NA	NA
M8	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	137	195	50	0.256410256	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	182	34	13	0.382352941	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999377	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	149	6	0	0	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	138	81	15	0.185185185	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	ATG	synonymous	NA	NA	NA	NA
M8	chr4	32712071	12A2p6	cell line	sgMsh2	32712071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.306	108	37	5	0.135135135	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon38:c.5588delA:p.N1864Ifs*29	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	164	33	3	0.090909091	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr4	32773266	12A2p6	cell line	sgMsh2	32773266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	100	54	12	0.222222222	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon101:c.C16424T:p.A5475V	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr4	32815241	12A2p6	cell line	sgMsh2	32815241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	113	0	0	NA	exonic	Ankrd6	synonymous SNV	"Ankrd6:NM_001012451:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_001355587:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_080471:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_001012450:exon14:c.G1362A:p.Q454Q"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9917257	GCT	synonymous	NA	NA	NA	NA
M8	chr4	33223648	12A2p6	cell line	sgMsh2	33223648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	116	0	0	NA	exonic	Srsf12	nonsynonymous SNV	"Srsf12:NM_001356473:exon2:c.G146A:p.R49H,Srsf12:NM_001372518:exon2:c.G146A:p.R49H"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9923493	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	200	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9998645	TTA	synonymous	NA	NA	NA	NA
M8	chr4	34028437	12A2p6	cell line	sgMsh2	34028437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	150	0	0	NA	exonic	Spaca1	synonymous SNV	Spaca1:NM_026293:exon7:c.T879C:p.P293P	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	CAG	synonymous	NA	NA	NA	NA
M8	chr4	34570964	12A2p6	cell line	sgMsh2	34570964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	111	114	23	0.201754386	exonic	Orc3	synonymous SNV	"Orc3:NM_001159563:exon20:c.T2094C:p.P698P,Orc3:NM_015824:exon20:c.T2097C:p.P699P"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	TAG	synonymous	NA	NA	NA	NA
M8	chr4	34806129	12A2p6	cell line	sgMsh2	34806129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	287	137	31	0.226277372	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A6929G:p.K2310R	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	190	72	17	0.236111111	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	146	43	13	0.302325581	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	35708322	12A2p6	cell line	sgMsh2	35708322	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	183	0	0	NA	exonic	Lingo2	nonsynonymous SNV	"Lingo2:NM_001166001:exon2:c.C1657A:p.L553M,Lingo2:NM_175516:exon3:c.C1657A:p.L553M,Lingo2:NM_001165999:exon8:c.C1657A:p.L553M,Lingo2:NM_001166000:exon9:c.C1657A:p.L553M"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999403	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr4	41035165	12A2p6	cell line	sgMsh2	41035165	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	56	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon5:c.C450T:p.Y150Y,Aqp7:NM_001378640:exon5:c.C360T:p.Y120Y,Aqp7:NM_001378642:exon5:c.C360T:p.Y120Y,Aqp7:NM_001378638:exon6:c.C450T:p.Y150Y,Aqp7:NM_001378641:exon6:c.C360T:p.Y120Y,Aqp7:NM_007473:exon6:c.C450T:p.Y150Y"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	TGT	synonymous	NA	NA	NA	NA
M8	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	215	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999985	TAC	synonymous	NA	NA	NA	NA
M8	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	61	3	0	0	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9629496	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	149	107	13	0.121495327	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8	chr4	41658870	12A2p6	cell line	sgMsh2	41658870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	72	1	0	0	exonic	Cntfr	nonsynonymous SNV	"Cntfr:NM_001136056:exon8:c.T860G:p.I287S,Cntfr:NM_001379211:exon8:c.T860G:p.I287S,Cntfr:NM_001379212:exon8:c.T860G:p.I287S,Cntfr:NM_001379213:exon8:c.T860G:p.I287S,Cntfr:NM_001379214:exon8:c.T860G:p.I287S,Cntfr:NM_001379215:exon8:c.T860G:p.I287S,Cntfr:NM_001379216:exon8:c.T860G:p.I287S,Cntfr:NM_016673:exon8:c.T860G:p.I287S"	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	125	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	212	14	4	0.285714286	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999983	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr4	45044856	12A2p6	cell line	sgMsh2	45044856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	73	21	2	0.095238095	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378819:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378820:exon7:c.G1217A:p.R406H,Fbxo10:NM_001378821:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378822:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378823:exon7:c.G1217A:p.R406H"	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	313	73	5	0.068493151	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr4	47410691	12A2p6	cell line	sgMsh2	47410691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	167	61	8	0.131147541	exonic	Tgfbr1	nonsynonymous SNV	"Tgfbr1:NM_001312869:exon8:c.T1177C:p.Y393H,Tgfbr1:NM_001312868:exon9:c.T1414C:p.Y472H,Tgfbr1:NM_009370:exon9:c.T1426C:p.Y476H"	4qB1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.838628	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	84	17	6	0.352941176	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9804102	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	190	54	11	0.203703704	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	83	47	8	0.170212766	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	CTC	synonymous	NA	NA	NA	NA
M8	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	321	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	58956811	12A2p6	cell line	sgMsh2	58956811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	85	0	0	NA	exonic	Zkscan16	synonymous SNV	"Zkscan16:NM_001099323:exon6:c.T1092C:p.G364G,Zkscan16:NM_001355408:exon7:c.T1092C:p.G364G"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GTG	synonymous	NA	NA	NA	NA
M8	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	194	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999629	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	53	21	4	0.19047619	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9837534	CCT	synonymous	NA	NA	NA	NA
M8	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	139	4	1	0.25	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9988215	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr4	65156040	12A2p6	cell line	sgMsh2	65156040	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	135	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon2:c.C830A:p.P277H	4qC1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	72	41	11	0.268292683	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	132	49	9	0.183673469	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	CTA	synonymous	NA	NA	NA	NA
M8	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	188	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	81385176	12A2p6	cell line	sgMsh2	81385176	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	162	20	4	0.2	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305284:exon5:c.G524A:p.S175N,Mpdz:NM_001305286:exon5:c.G524A:p.S175N,Mpdz:NM_010820:exon5:c.G524A:p.S175N"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr4	83417779	12A2p6	cell line	sgMsh2	83417779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	51	21	3	0.142857143	exonic	Snapc3	synonymous SNV	"Snapc3:NM_001358795:exon1:c.T27G:p.G9G,Snapc3:NM_029949:exon1:c.T27G:p.G9G"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	1	0.6945136	GTG	synonymous	GGC	8	GGCGGCGG	NA
M8	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	222	7	3	0.428571429	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999989	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	116	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	87	120	30	0.25	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr4	86821390	12A2p6	cell line	sgMsh2	86821390	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	140	103	29	0.281553398	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon21:c.C2915A:p.P972H	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	30	4	1	0.25	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	GTC	synonymous	NA	NA	NA	NA
M8	chr4	94599555	12A2p6	cell line	sgMsh2	94599555	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	44	0	0	NA	exonic	Gm12657	nonsynonymous SNV	Gm12657:NM_001081019:exon2:c.G171T:p.K57N	4qC5	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	154	28	9	0.321428571	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	64	117	29	0.247863248	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	220	103	22	0.213592233	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999988	CGA	synonymous	NA	NA	NA	NA
M8	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	146	37	2	0.054054054	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997044	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M8	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	149	40	7	0.175	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9915125	CTG	synonymous	NA	NA	NA	NA
M8	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.26	110	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8	chr4	106316515	12A2p6	cell line	sgMsh2	106316515	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.186	16	24	5	0.208333333	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon1:c.T44C:p.M15T	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.8831494	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr4	106420993	12A2p6	cell line	sgMsh2	106420993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	197	81	24	0.296296296	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon58:c.A6908G:p.H2303R	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9908166	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	151	125	21	0.168	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	TAG	synonymous	GTA	8	GTAGTAGT	NA
M8	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	275	57	7	0.122807018	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	207	7	2	0.285714286	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	108848161	12A2p6	cell line	sgMsh2	108848161	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.137	51	47	13	0.276595745	exonic	Kti12	synonymous SNV	Kti12:NM_029571:exon1:c.C271T:p.L91L	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	2	0.6852477	GCT	synonymous	NA	NA	NA	NA
M8	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	273	159	34	0.213836478	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	199	137	29	0.211678832	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.7445351	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	220	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999988	GCT	synonymous	NA	NA	NA	NA
M8	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	135	27	4	0.148148148	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9967257	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.248	29	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8	chr4	115452766	12A2p6	cell line	sgMsh2	115452766	C	-	Deletion	Strelka2;Vardict	2	0.2267	75	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
M8	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	269	3	1	0.333333333	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	116153567	12A2p6	cell line	sgMsh2	116153567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	38	58	19	0.327586207	exonic	Pomgnt1	nonsynonymous SNV	"Pomgnt1:NM_001290658:exon6:c.A485G:p.H162R,Pomgnt1:NM_026651:exon7:c.A551G:p.H184R,Pomgnt1:NM_029786:exon7:c.A551G:p.H184R"	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	CAC	nonsynonymous	TTCC	8	TTCCTTCC	NA
M8	chr4	116610869	12A2p6	cell line	sgMsh2	116610869	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	205	71	19	0.267605634	exonic	Nasp	synonymous SNV	Nasp:NM_016777:exon7:c.T918C:p.D306D	4qD1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999977	CAT	synonymous	NA	NA	NA	NA
M8	chr4	117964373	12A2p6	cell line	sgMsh2	117964373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	28	10	0.357142857	exonic	St3gal3	synonymous SNV	"St3gal3:NM_001285521:exon5:c.T303C:p.A101A,St3gal3:NM_001161774:exon6:c.T351C:p.A117A,St3gal3:NM_001285520:exon6:c.T351C:p.A117A,St3gal3:NM_009176:exon6:c.T351C:p.A117A"	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	TAG	synonymous	NA	NA	NA	NA
M8	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	73	28	6	0.214285714	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M8	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	172	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999904	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	49	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9807438	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	108	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9715517	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	341	98	23	0.234693878	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	ATT	synonymous	NA	NA	NA	NA
M8	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	211	191	43	0.22513089	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999822	CAG	synonymous	GT	8	GTGTGTGT	NA
M8	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	139	4	0	0	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995999	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	200	177	47	0.265536723	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999714	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	149	7	1	0.142857143	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	180	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9926369	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	83	1	0	0	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	171	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.9813931	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	121	182	41	0.225274725	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.7689054	TAG	synonymous	NA	NA	NA	NA
M8	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	178	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	128513468	12A2p6	cell line	sgMsh2	128513468	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	137	0	0	NA	exonic	Csmd2	synonymous SNV	Csmd2:NM_001281955:exon48:c.C7345T:p.L2449L	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	CCT	synonymous	NA	NA	NA	NA
M8	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	32	3	0	0	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.941532	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	74	2	0	0	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	CAT	synonymous	NA	NA	NA	NA
M8	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	112	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9982905	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	112	23	4	0.173913043	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8	chr4	132210821	12A2p6	cell line	sgMsh2	132210821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	227	177	25	0.141242938	exonic	Ythdf2	synonymous SNV	Ythdf2:NM_145393:exon3:c.T63C:p.G21G	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9999882	AAC	synonymous	NA	NA	NA	NA
M8	chr4	132292628	12A2p6	cell line	sgMsh2	132292628	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	185	172	44	0.255813953	exonic	Taf12	nonsynonymous SNV	Taf12:NM_025579:exon6:c.G452T:p.R151I	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	196	48	9	0.1875	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999966	TTC	synonymous	NA	NA	NA	NA
M8	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	39	43	9	0.209302326	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9191003	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	162	60	17	0.283333333	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	ATT	synonymous	NA	NA	NA	NA
M8	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	176	45	9	0.2	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999192	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	78	11	4	0.363636364	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	ATG	synonymous	NA	NA	NA	NA
M8	chr4	134853048	12A2p6	cell line	sgMsh2	134853048	T	C	SNV	Mutect2;MuSe;Vardict	3	0.248	15	78	19	0.243589744	exonic	Maco1	nonsynonymous SNV	Maco1:NM_025382:exon1:c.A70G:p.I24V	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9212578	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	88	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8150548	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	135218645	12A2p6	cell line	sgMsh2	135218645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	71	391	76	0.194373402	exonic	Clic4	nonsynonymous SNV	Clic4:NM_013885:exon5:c.T460C:p.Y154H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	1	0.5155113	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	137	242	15	0.061983471	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995637	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	136946015	12A2p6	cell line	sgMsh2	136946015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	82	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon3:c.T457C:p.F153L	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9878558	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	137531694	12A2p6	cell line	sgMsh2	137531694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	112	111	26	0.234234234	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon37:c.A4697G:p.N1566S	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	170	123	36	0.292682927	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998953	CTG	synonymous	NA	NA	NA	NA
M8	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	72	44	9	0.204545455	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9927919	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr4	138395569	12A2p6	cell line	sgMsh2	138395569	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.167	29	0	0	NA	exonic	Fam43b	nonsynonymous SNV	Fam43b:NM_001081672:exon1:c.T439C:p.Y147H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	1	0.8138976	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	69	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8	chr4	139371766	12A2p6	cell line	sgMsh2	139371766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	50	52	10	0.192307692	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon20:c.T2550C:p.A850A,Emc1:NM_146157:exon21:c.T2559C:p.A853A"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9746726	CTA	synonymous	NA	NA	NA	NA
M8	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	94	15	2	0.133333333	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9879773	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	92	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr4	141030149	12A2p6	cell line	sgMsh2	141030149	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	30	13	2	0.153846154	exonic	Crocc	synonymous SNV	"Crocc:NM_001145958:exon21:c.G2832A:p.R944R,Crocc:NM_172122:exon22:c.G3324A:p.R1108R"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	CCC	synonymous	CCTA	10	CCTACCTACC	NA
M8	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	107	1425	381	0.267368421	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	50	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	274	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	CCT	synonymous	NA	NA	NA	NA
M8	chr4	144157905	12A2p6	cell line	sgMsh2	144157905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	294	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon4:c.A1460G:p.D487G	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr4	144373053	12A2p6	cell line	sgMsh2	144373053	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	261	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T1141A:p.F381I	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	144377206	12A2p6	cell line	sgMsh2	144377206	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	106	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon2:c.G349A:p.V117M	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983345	ACA	nonsynonymous	NA	NA	NA	NA
M8	chr4	145292753	12A2p6	cell line	sgMsh2	145292753	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	58	0	0	NA	exonic	Tnfrsf8	nonsynonymous SNV	Tnfrsf8:NM_009401:exon6:c.A511G:p.T171A	4qE1	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	77	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9913713	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	91	21	3	0.142857143	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9968183	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr4	152052640	12A2p6	cell line	sgMsh2	152052640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	155	122	22	0.180327869	exonic	Nol9	synonymous SNV	"Nol9:NM_001159599:exon9:c.C1629T:p.G543G,Nol9:NM_001378856:exon9:c.C1632T:p.G544G,Nol9:NM_028727:exon9:c.C1629T:p.G543G"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.969575	GCT	synonymous	NA	NA	NA	NA
M8	chr4	154081548	12A2p6	cell line	sgMsh2	154081548	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	28	0	0	NA	exonic	Trp73	nonsynonymous SNV	"Trp73:NM_001126330:exon2:c.T63G:p.S21R,Trp73:NM_001126331:exon2:c.T63G:p.S21R,Trp73:NM_011642:exon4:c.T186G:p.S62R"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9535644	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	71	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	120	6	1	0.166666667	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr4	155101290	12A2p6	cell line	sgMsh2	155101290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	60	5	0	0	exonic	Morn1	nonsynonymous SNV	"Morn1:NM_001081100:exon7:c.A562G:p.S188G,Morn1:NM_001356327:exon7:c.A262G:p.S88G"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	239	20	3	0.15	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999947	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr4	155823508	12A2p6	cell line	sgMsh2	155823508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	55	173	39	0.225433526	exonic	Ccnl2	synonymous SNV	Ccnl2:NM_207678:exon11:c.A1368G:p.P456P	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	CAC	synonymous	NA	NA	NA	NA
M8	chr4	155847887	12A2p6	cell line	sgMsh2	155847887	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.222	18	83	24	0.289156627	exonic	Dvl1	synonymous SNV	"Dvl1:NM_001356381:exon1:c.C153A:p.S51S,Dvl1:NM_010091:exon1:c.C153A:p.S51S"	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9301834	CCA	synonymous	NA	NA	NA	NA
M8	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	127	80	10	0.125	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.5388478	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	103	33	7	0.212121212	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.995182	CAA	synonymous	NA	NA	NA	NA
M8	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	190	18	8	0.444444444	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-3172993-156223608	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	230	22	15	0.681818182	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	164	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	168	45	11	0.244444444	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	167	53	13	0.245283019	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998808	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	67	64	30	0.46875	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr5	4756679	12A2p6	cell line	sgMsh2	4756679	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	56	29	7	0.24137931	exonic	Fzd1	nonsynonymous SNV	Fzd1:NM_021457:exon1:c.A902G:p.Y301C	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	140	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	CTT	synonymous	NA	NA	NA	NA
M8	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	221	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	TAG	synonymous	NA	NA	NA	NA
M8	chr5	6770762	12A2p6	cell line	sgMsh2	6770762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	233	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.G2300T:p.S767I	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999931	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr5	8835038	12A2p6	cell line	sgMsh2	8835038	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	118	58	0	0	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon20:c.G2402T:p.W801L	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.239290022	3	0.9999994	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	79	192	45	0.234375	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	CTG	synonymous	NA	NA	NA	NA
M8	chr5	13451191	12A2p6	cell line	sgMsh2	13451191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	32	7	0.21875	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon2:c.G200A:p.S67N,Sema3a:NM_001243072:exon3:c.G200A:p.S67N,Sema3a:NM_001243073:exon3:c.G200A:p.S67N"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9991578	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr5	14515359	12A2p6	cell line	sgMsh2	14515359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	23	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon1:c.C138A:p.S46R,Pclo:NM_011995:exon1:c.C138A:p.S46R"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9429916	GCG	nonsynonymous	GAG	14	GAGGAGGAGAGGAG	NA
M8	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	169	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	184	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999429	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	166	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	100	10	0	0	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	16561001	12A2p6	cell line	sgMsh2	16561001	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	130	0	0	NA	exonic	Hgf	nonsynonymous SNV	"Hgf:NM_001289461:exon2:c.A134G:p.K45R,Hgf:NM_001289458:exon3:c.A134G:p.K45R,Hgf:NM_001289459:exon3:c.A134G:p.K45R,Hgf:NM_001289460:exon3:c.A134G:p.K45R,Hgf:NM_010427:exon3:c.A134G:p.K45R"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	AAG	nonsynonymous	A	5	AAAAA	NA
M8	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.329	161	178	30	0.168539326	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M8	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	235	135	32	0.237037037	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr5	21575278	12A2p6	cell line	sgMsh2	21575278	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	204	0	0	NA	exonic	Lrrc17	nonsynonymous SNV	Lrrc17:NM_028977:exon4:c.G1249A:p.D417N	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9987065	GGA	nonsynonymous	NA	NA	NA	NA
M8	chr5	21885520	12A2p6	cell line	sgMsh2	21885520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	205	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon64:c.A10333G:p.R3445G	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999977	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	40	3	3	1	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9718373	CAT	synonymous	NA	NA	NA	NA
M8	chr5	24386328	12A2p6	cell line	sgMsh2	24386328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	67	1	0	0	exonic	Atg9b	synonymous SNV	Atg9b:NM_001002897:exon9:c.T2271C:p.S757S	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9910672	CAC	synonymous	NA	NA	NA	NA
M8	chr5	24415419	12A2p6	cell line	sgMsh2	24415419	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	58	1	0	0	exonic	Asic3	synonymous SNV	"Asic3:NM_001310474:exon2:c.C567A:p.T189T,Asic3:NM_183000:exon2:c.C567A:p.T189T"	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	CCT	synonymous	NA	NA	NA	NA
M8	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	38	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	25308533	12A2p6	cell line	sgMsh2	25308533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	151	30	10	0.333333333	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon39:c.G9262T:p.D3088Y	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	188	13	6	0.461538462	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999519	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	340	20	4	0.2	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GAA	synonymous	NA	NA	NA	NA
M8	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	64	0	0	NA	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	ATT	nonsynonymous	T	5	TTTTT	NA
M8	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	109	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	81	4	1	0.25	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	140	55	12	0.218181818	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.497	105	132	44	0.333333333	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M8	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	224	89	16	0.179775281	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M8	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	226	84	15	0.178571429	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999907	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M8	chr5	31198251	12A2p6	cell line	sgMsh2	31198251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	56	108	39	0.361111111	exonic	Snx17	nonsynonymous SNV	Snx17:NM_153680:exon14:c.A1273G:p.S425G	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	103	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	132	837	174	0.207885305	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	321	46	23	0.5	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CAG	synonymous	NA	NA	NA	NA
M8	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	240	47	14	0.29787234	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999949	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M8	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	121	18	4	0.222222222	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9958118	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	149	19	8	0.421052632	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	267	37	10	0.27027027	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999984	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	80	37	4	0.108108108	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	36952474	12A2p6	cell line	sgMsh2	36952474	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	159	0	0	NA	exonic	Ppp2r2c	synonymous SNV	"Ppp2r2c:NM_001360003:exon9:c.C1134T:p.R378R,Ppp2r2c:NM_172994:exon9:c.C1176T:p.R392R"	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9989187	GCG	synonymous	GT	9	GTGTGTGTG	NA
M8	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	134	95	25	0.263157895	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	69	470	103	0.219148936	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9918014	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr5	52808267	12A2p6	cell line	sgMsh2	52808267	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	182	46	8	0.173913043	exonic	Zcchc4	synonymous SNV	"Zcchc4:NM_001309445:exon7:c.C264T:p.S88S,Zcchc4:NM_001308144:exon8:c.C912T:p.S304S,Zcchc4:NM_030185:exon8:c.C912T:p.S304S"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999377	GCC	synonymous	NA	NA	NA	NA
M8	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	42	124	27	0.217741935	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	220	149	44	0.295302013	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999988	GTT	nonsynonymous	G	5	GGGGG	NA
M8	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	284	64	0	0	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	201	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	98	886	217	0.244920993	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	97	88	35	0.397727273	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	GTA	synonymous	NA	NA	NA	NA
M8	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	161	2	1	0.5	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	195	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999645	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr5	69340967	12A2p6	cell line	sgMsh2	69340967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	13	0	0	NA	exonic	Kctd8	nonsynonymous SNV	Kctd8:NM_175519:exon1:c.A335G:p.Y112C	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9147259	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	60	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr5	70777242	12A2p6	cell line	sgMsh2	70777242	A	-	Deletion	Strelka2;Vardict	2	0.2208	77	0	0	NA	exonic	Gabrg1	frameshift deletion	Gabrg1:NM_010252:exon7:c.792delT:p.F264Lfs*2	5qC3.1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M8	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	235	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	TAT	synonymous	NA	NA	NA	NA
M8	chr5	73639485	12A2p6	cell line	sgMsh2	73639485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	185	69	10	0.144927536	exonic	Sgcb	nonsynonymous SNV	Sgcb:NM_011890:exon5:c.C657G:p.N219K	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999453	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.493	142	32	21	0.65625	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.753	115	44	22	0.5	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M8	chr5	76857279	12A2p6	cell line	sgMsh2	76857279	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	34	0	0	NA	exonic	Cracd	stopgain	Cracd:NM_001163793:exon6:c.G1486T:p.G496X	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8602834	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	113	8	1	0.125	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998769	ATG	synonymous	NA	NA	NA	NA
M8	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	158	110	33	0.3	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9892906	CTG	synonymous	NA	NA	NA	NA
M8	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	97	161	41	0.254658385	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	ATT	synonymous	NA	NA	NA	NA
M8	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	103	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	163	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9997852	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	229	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	87486311	12A2p6	cell line	sgMsh2	87486311	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	197	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.G436A:p.E146K	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9996738	TCG	nonsynonymous	NA	NA	NA	NA
M8	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	203	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	GCA	nonsynonymous	NA	NA	NA	NA
M8	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	177	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999226	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	176	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999192	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	181	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9997901	TGG	nonsynonymous	NA	NA	NA	NA
M8	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	147	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	AAG	synonymous	NA	NA	NA	NA
M8	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	148	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	AAC	synonymous	A	5	AAAAA	NA
M8	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	224	5	0	0	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	CTG	synonymous	NA	NA	NA	NA
M8	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.468	144	1286	653	0.50777605	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr5	91594312	12A2p6	cell line	sgMsh2	91594312	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	87	218	32	0.146788991	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.G538A:p.A180T	5qE2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	308	99	31	0.313131313	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	CTG	synonymous	NA	NA	NA	NA
M8	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	66	298	78	0.261744966	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.990676	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	100392572	12A2p6	cell line	sgMsh2	100392572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	204	51	0.25	exonic	Sec31a	synonymous SNV	"Sec31a:NM_001359349:exon10:c.T447C:p.A149A,Sec31a:NM_001359323:exon11:c.T1254C:p.A418A,Sec31a:NM_001359332:exon11:c.T1254C:p.A418A,Sec31a:NM_001359344:exon11:c.T1254C:p.A418A,Sec31a:NM_001359348:exon11:c.T1254C:p.A418A,Sec31a:NM_001359350:exon11:c.T1254C:p.A418A,Sec31a:NM_026969:exon11:c.T1254C:p.A418A"	5qE4	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	CAG	synonymous	NA	NA	NA	NA
M8	chr5	101851333	12A2p6	cell line	sgMsh2	101851333	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	96	28	11	0.392857143	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon60:c.C9216T:p.P3072P	5qE4	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9921587	TGG	synonymous	TTGGGG	12	TTGGGGTTGGGG	NA
M8	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	117	32	13	0.40625	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	189	39	5	0.128205128	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	189	54	11	0.203703704	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	267	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999984	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	228	137	27	0.197080292	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999915	AAG	synonymous	NA	NA	NA	NA
M8	chr5	105015021	12A2p6	cell line	sgMsh2	105015021	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	144	0	0	NA	exonic	Gbp8	frameshift deletion	Gbp8:NM_029509:exon10:c.1506delA:p.K502Nfs*32	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8	chr5	105813013	12A2p6	cell line	sgMsh2	105813013	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	125	101	32	0.316831683	exonic	Lrrc8d	nonsynonymous SNV	"Lrrc8d:NM_001122768:exon3:c.C1288A:p.L430I,Lrrc8d:NM_178701:exon3:c.C1288A:p.L430I"	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	126	72	14	0.194444444	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	ATA	synonymous	NA	NA	NA	NA
M8	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	176	7	1	0.142857143	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999192	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	107748162	12A2p6	cell line	sgMsh2	107748162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	133	147	32	0.217687075	exonic	Evi5	nonsynonymous SNV	"Evi5:NM_007964:exon18:c.A2414G:p.Y805C,Evi5:NM_001378825:exon19:c.A2315G:p.Y772C,Evi5:NM_001378824:exon20:c.A2462G:p.Y821C"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	203	9	6	0.666666667	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr5	108332781	12A2p6	cell line	sgMsh2	108332781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	223	14	3	0.214285714	exonic	Pigg	nonsynonymous SNV	"Pigg:NM_001081234:exon8:c.A1406G:p.Y469C,Pigg:NM_001310689:exon8:c.A1430G:p.Y477C,Pigg:NM_001370998:exon8:c.A1430G:p.Y477C"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.999975	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	56	11	3	0.272727273	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr5	108797421	12A2p6	cell line	sgMsh2	108797421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	511	0	0	NA	exonic	Vmn2r8	synonymous SNV	Vmn2r8:NM_001104620:exon6:c.A2319G:p.E773E	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.04E-09	CTT	synonymous	NA	NA	NA	NA
M8	chr5	109220450	12A2p6	cell line	sgMsh2	109220450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	556	0	0	NA	exonic	Vmn2r14	synonymous SNV	"Vmn2r14:NM_001104625:exon3:c.A675G:p.E225E,Vmn2r14:NM_001384975:exon3:c.A675G:p.E225E"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.01E-09	CTT	synonymous	NA	NA	NA	NA
M8	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	126	3	1	0.333333333	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	111224177	12A2p6	cell line	sgMsh2	111224177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	13	2	0.153846154	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.T2491C:p.Y831H	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9992888	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	112370605	12A2p6	cell line	sgMsh2	112370605	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	76	31	4	0.129032258	exonic	Hps4	nonsynonymous SNV	"Hps4:NM_001359853:exon11:c.C1463T:p.T488I,Hps4:NM_138646:exon11:c.C1463T:p.T488I"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939302	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr5	113235995	12A2p6	cell line	sgMsh2	113235995	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	99	0	0	NA	exonic	Tmem211	frameshift deletion	Tmem211:NM_001033428:exon4:c.278delC:p.R95Efs*24	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr5	113746662	12A2p6	cell line	sgMsh2	113746662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	101	150	35	0.233333333	exonic	Sart3	nonsynonymous SNV	"Sart3:NM_001356621:exon15:c.A1934G:p.D645G,Sart3:NM_001356623:exon15:c.A713G:p.D238G,Sart3:NM_016926:exon15:c.A1880G:p.D627G"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9979332	GTC	nonsynonymous	TCCTCG	17	TCCTCGTCCTCGTCCTC	NA
M8	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	102	73	11	0.150684932	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	GTG	synonymous	NA	NA	NA	NA
M8	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	114	4	2	0.5	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988211	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	64	132	52	0.393939394	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	80	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9823974	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr5	117250933	12A2p6	cell line	sgMsh2	117250933	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	34	68	18	0.264705882	exonic	Taok3	nonsynonymous SNV	"Taok3:NM_001081308:exon14:c.C1402T:p.R468W,Taok3:NM_001199685:exon15:c.C1402T:p.R468W,Taok3:NM_183306:exon15:c.C1402T:p.R468W"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9637945	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	110	47	17	0.361702128	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9983937	CTT	synonymous	NA	NA	NA	NA
M8	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	40	14	2	0.142857143	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9718373	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	72	35	2	0.057142857	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	77	1	0	0	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9941856	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	164	12	7	0.583333333	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	190	10	3	0.3	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	104	7	2	0.285714286	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	165	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.99987	GTG	nonsynonymous	G	5	GGGGG	NA
M8	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	69	2	0	0	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9872464	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	170	302	69	0.228476821	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998953	AAA	synonymous	NA	NA	NA	NA
M8	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	189	250	56	0.224	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	TAC	synonymous	NA	NA	NA	NA
M8	chr5	127563656	12A2p6	cell line	sgMsh2	127563656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	59	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon9:c.G2890A:p.A964T	5qG1.2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	112	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	130248310	12A2p6	cell line	sgMsh2	130248310	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	85	258	60	0.23255814	exonic	Sbds	nonsynonymous SNV	Sbds:NM_023248:exon4:c.G600T:p.E200D	5qG1.3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	105	25	8	0.32	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	151	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	TAC	synonymous	NA	NA	NA	NA
M8	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	234	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr5	136012389	12A2p6	cell line	sgMsh2	136012389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	136	32	6	0.1875	exonic	Dtx2	nonsynonymous SNV	"Dtx2:NM_001256096:exon4:c.A647G:p.H216R,Dtx2:NM_001256098:exon4:c.A647G:p.H216R,Dtx2:NM_023742:exon4:c.A647G:p.H216R,Dtx2:NM_001256097:exon5:c.A647G:p.H216R"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	137600459	12A2p6	cell line	sgMsh2	137600459	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	9	17	2	0.117647059	exonic	Mospd3	nonsynonymous SNV	"Mospd3:NM_001254762:exon1:c.C17A:p.P6H,Mospd3:NM_030037:exon2:c.C17A:p.P6H"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.09969722	GGG	nonsynonymous	TCCTGG	12	TCCTGGTCCTGG	NA
M8	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	151	32	8	0.25	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997619	AGG	synonymous	NA	NA	NA	NA
M8	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	102	4	0	0	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	170	55	13	0.236363636	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998953	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	138178383	12A2p6	cell line	sgMsh2	138178383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	143	37	8	0.216216216	exonic	Ap4m1	nonsynonymous SNV	Ap4m1:NM_021392:exon15:c.T1244G:p.L415R	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	161	58	19	0.327586207	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr5	139393185	12A2p6	cell line	sgMsh2	139393185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	116	6	2	0.333333333	exonic	Gpr146	synonymous SNV	"Gpr146:NM_001038703:exon2:c.T741C:p.P247P,Gpr146:NM_001362206:exon2:c.T741C:p.P247P,Gpr146:NM_030258:exon2:c.T741C:p.P247P"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9475842	CTT	synonymous	NA	NA	NA	NA
M8	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	100	78	22	0.282051282	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	CTT	synonymous	NA	NA	NA	NA
M8	chr5	140310711	12A2p6	cell line	sgMsh2	140310711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	52	50	5	0.1	exonic	Mad1l1	nonsynonymous SNV	"Mad1l1:NM_001359025:exon3:c.C175T:p.R59C,Mad1l1:NM_010752:exon3:c.C175T:p.R59C"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr5	140908580	12A2p6	cell line	sgMsh2	140908580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	133	0	0	NA	exonic	Card11	nonsynonymous SNV	Card11:NM_175362:exon4:c.A293G:p.Y98C	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	85	4790	1051	0.219415449	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M8	chr5	143373198	12A2p6	cell line	sgMsh2	143373198	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	35	0	0	NA	exonic	Grid2ip	frameshift deletion	"Grid2ip:NM_001347529:exon2:c.240delA:p.T81Pfs*65,Grid2ip:NM_133355:exon2:c.219delA:p.T74Pfs*65,Grid2ip:NM_001159321:exon3:c.756delA:p.T253Pfs*65"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8	chr5	143891512	12A2p6	cell line	sgMsh2	143891512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	119	2	0	0	exonic	Ankrd61	nonsynonymous SNV	"Ankrd61:NM_001310772:exon3:c.T518C:p.M173T,Ankrd61:NM_025732:exon3:c.T644C:p.M215T"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	CAT	nonsynonymous	T	5	TTTTT	NA
M8	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	132	595	146	0.245378151	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9802883	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	127	534	151	0.282771536	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr5	145220074	12A2p6	cell line	sgMsh2	145220074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	103	18	0	0	exonic	Zkscan5	nonsynonymous SNV	"Zkscan5:NM_001167944:exon4:c.A1166C:p.N389T,Zkscan5:NM_001359190:exon4:c.A719C:p.N240T,Zkscan5:NM_001359192:exon4:c.A1003C:p.T335P,Zkscan5:NM_001359187:exon6:c.A1340C:p.N447T,Zkscan5:NM_001359188:exon6:c.A938C:p.N313T,Zkscan5:NM_001359189:exon6:c.A824C:p.N275T,Zkscan5:NM_001359191:exon6:c.A1222C:p.T408P,Zkscan5:NM_016683:exon6:c.A1385C:p.N462T"	5qG2	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	AAC	nonsynonymous	AGA	14	AGAAGAAGTAAGAA	NA
M8	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.443	277	60	32	0.533333333	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999999	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	95	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr5	147519728	12A2p6	cell line	sgMsh2	147519728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	103	84	20	0.238095238	exonic	Pan3	synonymous SNV	"Pan3:NM_028291:exon6:c.A1062G:p.T354T,Pan3:NM_001359433:exon7:c.A288G:p.T96T"	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	CAA	synonymous	NA	NA	NA	NA
M8	chr5	147578339	12A2p6	cell line	sgMsh2	147578339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	199	22	3	0.136363636	exonic	Flt1	nonsynonymous SNV	Flt1:NM_010228:exon24:c.A3272G:p.E1091G	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr5	148077006	12A2p6	cell line	sgMsh2	148077006	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	83	0	0	NA	exonic	Mtus2	nonsynonymous SNV	"Mtus2:NM_001359503:exon2:c.C608A:p.P203H,Mtus2:NM_029920:exon2:c.C608A:p.P203H"	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr5	150436942	12A2p6	cell line	sgMsh2	150436942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	100	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon44:c.A6052G:p.T2018A	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9953151	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	174	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344388-151647482	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	TAC	synonymous	NA	NA	NA	NA
M8	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.431	117	71	9	0.126760563	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M8	chr6	3376134	12A2p6	cell line	sgMsh2	3376134	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	303	2	0	0	exonic	Samd9l	nonsynonymous SNV	Samd9l:NM_010156:exon2:c.G1126A:p.A376T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.555152851	2	1.31E-09	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	200	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.9114595	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M8	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	215	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	2	0.9901358	TGC	nonsynonymous	NA	NA	NA	NA
M8	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	252	41	7	0.170731707	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	2	0.6094428	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M8	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	343	2	0	0	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9999997	TGC	synonymous	NA	NA	NA	NA
M8	chr6	4755175	12A2p6	cell line	sgMsh2	4755175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	85	0	0	NA	exonic	Peg10	nonsynonymous SNV	Peg10:NM_001040611:exon2:c.A955G:p.T319A	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.827943476	1	0.8167335	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	4755306	12A2p6	cell line	sgMsh2	4755306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	62	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.A1086G:p.K362K	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	AAG	synonymous	NA	NA	NA	NA
M8	chr6	5077585	12A2p6	cell line	sgMsh2	5077585	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	213	0	0	NA	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon6:c.C1863T:p.H621H,Ppp1r9a:NM_181595:exon6:c.C1863T:p.H621H"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.799228673	2	0.6575738	ACT	synonymous	NA	NA	NA	NA
M8	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	191	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9451425	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	6867087	12A2p6	cell line	sgMsh2	6867087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	183	0	0	NA	exonic	Dlx6	nonsynonymous SNV	Dlx6:NM_010057:exon3:c.T689C:p.L230P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9637883	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	288	949	144	0.151738672	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.784871272	2	0.9339474	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.157	177	1523	270	0.177281681	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9275108	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M8	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	149	905	155	0.171270718	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9973456	CAC	synonymous	NA	NA	NA	NA
M8	chr6	8083742	12A2p6	cell line	sgMsh2	8083742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	370	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon21:c.G1714T:p.G572W	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.593439254	2	1.08E-09	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	8672392	12A2p6	cell line	sgMsh2	8672392	T	-	Deletion	Strelka2;Vardict	2	0.1243	177	29	2	0.068965517	exonic	Ica1	frameshift deletion	"Ica1:NM_001252266:exon6:c.608delA:p.N203Tfs*4,Ica1:NM_010492:exon7:c.608delA:p.N203Tfs*4"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.594874995	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M8	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	140	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.55036705	2	0.9999018	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M8	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	296	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	2	0.9999874	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	142	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.6395829	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	17286929	12A2p6	cell line	sgMsh2	17286929	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	269	520	71	0.136538462	exonic	Cav2	nonsynonymous SNV	Cav2:NM_016900:exon3:c.T371C:p.M124T	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	0.999995	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	218	145	15	0.103448276	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	244	772	112	0.14507772	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	2	0.9996731	GTT	synonymous	NA	NA	NA	NA
M8	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	240	766	120	0.156657963	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9999572	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	409	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9997424	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	191	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.8383487	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.674	237	96	65	0.677083333	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	2	1	1	0.9999942	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M8	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	314	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9992587	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr6	25669428	12A2p6	cell line	sgMsh2	25669428	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	206	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon2:c.T1416G:p.H472Q	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.679583662	2	0.9993258	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	225	223	34	0.152466368	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.7474973	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	29482276	12A2p6	cell line	sgMsh2	29482276	A	G	SNV	Mutect2;Vardict	2	0.074	56	1	0	0	exonic	Kcp	nonsynonymous SNV	Kcp:NM_001029985:exon38:c.T4622C:p.V1541A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.354149232	3	0.000915236	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	30372940	12A2p6	cell line	sgMsh2	30372940	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	89	124	14	0.112903226	exonic	Zc3hc1	nonsynonymous SNV	"Zc3hc1:NM_001311086:exon8:c.G1028T:p.S343I,Zc3hc1:NM_172735:exon8:c.G1028T:p.S343I"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65565466	2	0.937458	ACT	nonsynonymous	T	5	TTTTT	NA
M8	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	164	129	26	0.201550388	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54558125	2	0.9999861	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	329	271	39	0.143911439	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	2	0.9999894	AAC	nonsynonymous	A	5	AAAAA	NA
M8	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	197	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.992184	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	263	11	3	0.272727273	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.9312141	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	471	73	12	0.164383562	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9979971	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	89	233	31	0.13304721	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.09165672	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M8	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	60	4	1	0.25	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr6	38636610	12A2p6	cell line	sgMsh2	38636610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	43	4	2	0.5	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A457G:p.T153A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	1	0.6916783	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	39465170	12A2p6	cell line	sgMsh2	39465170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	125	2	0	0	exonic	Dennd2a	nonsynonymous SNV	Dennd2a:NM_172477:exon17:c.A2765G:p.E922G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.6490263	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	39574305	12A2p6	cell line	sgMsh2	39574305	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	69	11	1	0.090909091	exonic	Adck2	nonsynonymous SNV	Adck2:NM_178873:exon1:c.T5C:p.V2A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.94355	GTG	nonsynonymous	C	5	CCCCC	NA
M8	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	253	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9943272	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	274	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9989699	CTT	synonymous	NA	NA	NA	NA
M8	chr6	40897780	12A2p6	cell line	sgMsh2	40897780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	191	0	0	NA	exonic	Prss58	synonymous SNV	Prss58:NM_175020:exon3:c.T126C:p.T42T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.660440461	2	0.9995175	CAG	synonymous	NA	NA	NA	NA
M8	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	577	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	2	0.9308941	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	205	10	3	0.3	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.6855594	TTG	synonymous	NA	NA	NA	NA
M8	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.174	94	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8	chr6	42350378	12A2p6	cell line	sgMsh2	42350378	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	35	279	34	0.121863799	exonic	Zyx	nonsynonymous SNV	"Zyx:NM_001289617:exon2:c.A110T:p.N37I,Zyx:NM_001289618:exon2:c.A110T:p.N37I,Zyx:NM_001289619:exon2:c.A110T:p.N37I,Zyx:NM_011777:exon2:c.A110T:p.N37I"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9105969	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	208	615	97	0.157723577	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.682296	ACG	synonymous	NA	NA	NA	NA
M8	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	169	72	6	0.083333333	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	0.9990795	ATG	synonymous	NA	NA	NA	NA
M8	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	176	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.9842392	ATG	nonsynonymous	G	5	GGGGG	NA
M8	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	257	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9946187	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	561	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.999945	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	207	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.473794243	2	0.9951844	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	47803564	12A2p6	cell line	sgMsh2	47803564	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	288	483	40	0.082815735	exonic	Pdia4	synonymous SNV	"Pdia4:NM_009787:exon6:c.G834A:p.Q278Q,Pdia4:NM_001368756:exon7:c.G1008A:p.Q336Q"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.54079545	2	5.36E-09	ACT	synonymous	NA	NA	NA	NA
M8	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	191	9	1	0.111111111	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.646083059	2	0.9997718	TAG	synonymous	NA	NA	NA	NA
M8	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	63	16	3	0.1875	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.987573	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	60	42	5	0.119047619	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.555152851	2	0.9458643	GTG	synonymous	NA	NA	NA	NA
M8	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	123	6	1	0.166666667	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9975616	CCC	synonymous	NA	NA	NA	NA
M8	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	81	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	1	0.7476066	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	140	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9988422	GTC	synonymous	NA	NA	NA	NA
M8	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	76	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9939302	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	135	5	3	0.6	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	49075240	12A2p6	cell line	sgMsh2	49075240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	281	144	28	0.194444444	exonic	Malsu1	synonymous SNV	Malsu1:NM_029353:exon2:c.T393C:p.A131A	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.741799068	2	0.997115	CTA	synonymous	NA	NA	NA	NA
M8	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	152	14	1	0.071428571	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9619851	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	51433109	12A2p6	cell line	sgMsh2	51433109	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	26	13	0	0	exonic	Nfe2l3	frameshift deletion	Nfe2l3:NM_010903:exon1:c.203delC:p.L70Cfs*28	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	84	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	207	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.737013268	2	0.9836904	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	56174981	12A2p6	cell line	sgMsh2	56174981	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	359	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon5:c.C509T:p.A170V,Pde1c:NM_001159956:exon5:c.C425T:p.A142V,Pde1c:NM_001025568:exon6:c.C536T:p.A179V,Pde1c:NM_001159953:exon6:c.C536T:p.A179V,Pde1c:NM_001159957:exon6:c.C452T:p.A151V,Pde1c:NM_001355475:exon6:c.C536T:p.A179V,Pde1c:NM_001159955:exon7:c.C536T:p.A179V,Pde1c:NM_001159960:exon7:c.C536T:p.A179V,Pde1c:NM_011054:exon7:c.C536T:p.A179V"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.7196509	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr6	56753863	12A2p6	cell line	sgMsh2	56753863	A	-	Deletion	Mutect2;Strelka2	2	0.108	136	152	15	0.098684211	exonic	Avl9	frameshift deletion	Avl9:NM_030235:exon15:c.1771delA:p.I593Lfs*71	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.516866447	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	531	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	366	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.703512664	2	0.9999938	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	188	2	0	0	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708298465	2	0.9935104	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	282	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.713084265	2	0.9996915	GAC	synonymous	NA	NA	NA	NA
M8	chr6	57662763	12A2p6	cell line	sgMsh2	57662763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	231	1	0	0	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon23:c.G2861A:p.R954Q	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8255163	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	254	22	0	0	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.145	264	20	0	0	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.693941064	2	0.999854	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr6	58906905	12A2p6	cell line	sgMsh2	58906905	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	80	0	0	NA	exonic	Nap1l5	synonymous SNV	Nap1l5:NM_021432:exon1:c.C63T:p.G21G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CGC	synonymous	NA	NA	NA	NA
M8	chr6	58939351	12A2p6	cell line	sgMsh2	58939351	T	-	Deletion	Strelka2;Vardict	2	0.1264	174	0	0	NA	exonic	Fam13a	stopgain	Fam13a:NM_153574:exon17:c.1900delA:p.M634fs*0	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.604925175	NA	NA	ATT	nonsynonymous	T	9	TTTTTTTTT	-1
M8	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	234	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9958565	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	230	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.759451	CCT	synonymous	NA	NA	NA	NA
M8	chr6	60977328	12A2p6	cell line	sgMsh2	60977328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	246	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon6:c.A2592G:p.K864K,Mmrn1:NM_027613:exon6:c.A2592G:p.K864K"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.8984772	AAG	synonymous	A	5	AAAAA	NA
M8	chr6	61570680	12A2p6	cell line	sgMsh2	61570680	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	115	0	0	NA	exonic	Ccser1	nonsynonymous SNV	"Ccser1:NM_001164316:exon6:c.C1726A:p.L576M,Ccser1:NM_183310:exon6:c.C1726A:p.L576M"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	66536011	12A2p6	cell line	sgMsh2	66536011	T	C	SNV	Mutect2;MuSe;Vardict	3	0.069	459	193	0	0	exonic	Mad2l1	nonsynonymous SNV	"Mad2l1:NM_001355624:exon2:c.T127C:p.F43L,Mad2l1:NM_019499:exon2:c.T127C:p.F43L"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.33022023	3	1	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	501	212	30	0.141509434	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.737013268	2	0.9999963	CTG	synonymous	NA	NA	NA	NA
M8	chr6	67281808	12A2p6	cell line	sgMsh2	67281808	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	127	1163	148	0.127257094	exonic	Serbp1	nonsynonymous SNV	"Serbp1:NM_001113564:exon7:c.G1136A:p.S379N,Serbp1:NM_001113565:exon7:c.G1109A:p.S370N,Serbp1:NM_001113566:exon7:c.G1091A:p.S364N,Serbp1:NM_025814:exon7:c.G1154A:p.S385N"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.598225055	2	0.9986786	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	140	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	334	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.9907211	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	71561046	12A2p6	cell line	sgMsh2	71561046	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	131	291	50	0.171821306	exonic	Chmp3	nonsynonymous SNV	"Chmp3:NM_001355674:exon3:c.T178A:p.S60T,Chmp3:NM_001355675:exon3:c.T178A:p.S60T,Chmp3:NM_001361405:exon3:c.T256A:p.S86T,Chmp3:NM_025783:exon3:c.T256A:p.S86T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	319	211	35	0.165876777	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	2	0.6520197	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	190	143	17	0.118881119	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9463078	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	120	2	0	0	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	94	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	72842996	12A2p6	cell line	sgMsh2	72842996	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	191	457	52	0.113785558	exonic	Kcmf1	nonsynonymous SNV	"Kcmf1:NM_001347231:exon7:c.A866C:p.D289A,Kcmf1:NM_019715:exon7:c.A1019C:p.D340A"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999313	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr6	73155357	12A2p6	cell line	sgMsh2	73155357	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	145	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon22:c.C3361T:p.P1121S	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.6687226	GGC	nonsynonymous	GCAG	8	GCAGGCAG	NA
M8	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	192	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.526438048	2	0.9999928	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	120	34	5	0.147058824	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr6	82760171	12A2p6	cell line	sgMsh2	82760171	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	96	298	54	0.181208054	exonic	Hk2	synonymous SNV	Hk2:NM_013820:exon2:c.T159C:p.A53A	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9611961	TAG	synonymous	NA	NA	NA	NA
M8	chr6	82937102	12A2p6	cell line	sgMsh2	82937102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	129	0	0	NA	exonic	Sema4f	nonsynonymous SNV	Sema4f:NM_011350:exon2:c.T274C:p.F92L	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9935615	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	83048100	12A2p6	cell line	sgMsh2	83048100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	200	7	2	0.285714286	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon5:c.A808G:p.T270A	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9993503	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M8	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	110	2	1	0.5	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.963381	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	153	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.717870066	2	0.966346	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	86366635	12A2p6	cell line	sgMsh2	86366635	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	73	39	4	0.102564103	exonic	Fam136a	nonsynonymous SNV	"Fam136a:NM_001368363:exon2:c.A47G:p.N16S,Fam136a:NM_025591:exon2:c.A113G:p.N38S"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9166447	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	385	403	68	0.168734491	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	1.30E-08	CAA	synonymous	NA	NA	NA	NA
M8	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	247	85	11	0.129411765	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	2	0.519351	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M8	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	156	108	28	0.259259259	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.09659712	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	71	17	1	0.058823529	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.373292434	3	0.7604496	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	88512166	12A2p6	cell line	sgMsh2	88512166	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	73	955	184	0.192670157	exonic	Sec61a1	synonymous SNV	Sec61a1:NM_016906:exon7:c.G552A:p.A184A	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9511985	TCG	synonymous	NA	NA	NA	NA
M8	chr6	88849451	12A2p6	cell line	sgMsh2	88849451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	42	0	0	NA	exonic	Podxl2	nonsynonymous SNV	"Podxl2:NM_001347327:exon3:c.T872C:p.V291A,Podxl2:NM_001364575:exon3:c.T680C:p.V227A,Podxl2:NM_001379217:exon3:c.T872C:p.V291A,Podxl2:NM_001379218:exon3:c.T680C:p.V227A,Podxl2:NM_001379219:exon3:c.T680C:p.V227A,Podxl2:NM_001379220:exon3:c.T680C:p.V227A,Podxl2:NM_001379221:exon3:c.T680C:p.V227A,Podxl2:NM_001379222:exon3:c.T680C:p.V227A,Podxl2:NM_001379223:exon3:c.T680C:p.V227A,Podxl2:NM_176973:exon3:c.T680C:p.V227A"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9680413	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	91017365	12A2p6	cell line	sgMsh2	91017365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	87	15	3	0.2	exonic	Nup210	nonsynonymous SNV	Nup210:NM_018815:exon37:c.G5350A:p.A1784T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.698726864	2	0.8295756	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	433	76	20	0.263157895	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.665226261	2	6.38E-09	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	221	105	20	0.19047619	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.737013268	2	0.9890055	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	138	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	92890120	12A2p6	cell line	sgMsh2	92890120	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	287	40	7	0.175	exonic	Adamts9	nonsynonymous SNV	Adamts9:NM_175314:exon13:c.A2027C:p.K676T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.5906863	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	206	623	99	0.158908507	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.7521139	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	97993315	12A2p6	cell line	sgMsh2	97993315	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	78	15	2	0.133333333	exonic	Mitf	synonymous SNV	"Mitf:NM_008601:exon2:c.T222G:p.P74P,Mitf:NM_001113198:exon3:c.T543G:p.P181P,Mitf:NM_001178049:exon3:c.T495G:p.P165P"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9501412	CTA	synonymous	NA	NA	NA	NA
M8	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	551	76	13	0.171052632	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.9975318	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	218	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.864105	CTT	synonymous	NA	NA	NA	NA
M8	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	240	2	0	0	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.998589	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	248	2	0	0	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9999098	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	158	38	1	0.026315789	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	170	38	3	0.078947368	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.65086886	2	0.9991261	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M8	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	151	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9784087	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr6	112644629	12A2p6	cell line	sgMsh2	112644629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	272	73	16	0.219178082	exonic	Rad18	synonymous SNV	"Rad18:NM_001381931:exon11:c.T1389C:p.C463C,Rad18:NM_021385:exon11:c.T1389C:p.C463C,Rad18:NM_001167730:exon12:c.T1467C:p.C489C,Rad18:NM_001381932:exon12:c.T1467C:p.C489C,Rad18:NM_001381933:exon12:c.T993C:p.C331C"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9998191	TAC	synonymous	NA	NA	NA	NA
M8	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	260	571	104	0.182136602	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.737013268	2	0.9963628	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	105	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87101568	1	0.9343024	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	493	8	2	0.25	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9983686	TTA	synonymous	NA	NA	NA	NA
M8	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	340	7	0	0	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9992605	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	333	52	13	0.25	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	0.9998769	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	208	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8643096	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	163	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.603010855	2	0.9998504	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	116246161	12A2p6	cell line	sgMsh2	116246161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	104	186	36	0.193548387	exonic	Washc2	synonymous SNV	Washc2:NM_026585:exon22:c.T2184C:p.S728S	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	1	0.5833102	GTG	synonymous	NA	NA	NA	NA
M8	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	102	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.559938651	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	332	121	21	0.173553719	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.708298465	2	0.9999654	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	117	23	1	0.043478261	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	NA	NA	CGT	frameshift	NA	NA	NA	-1
M8	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	174	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.8006216	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M8	chr6	120389037	12A2p6	cell line	sgMsh2	120389037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	378	162	39	0.240740741	exonic	Kdm5a	synonymous SNV	Kdm5a:NM_145997:exon9:c.T1137C:p.N379N	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.9975726	ATA	synonymous	NA	NA	NA	NA
M8	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	126	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	2	0.9938168	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	121473302	12A2p6	cell line	sgMsh2	121473302	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	39	0	0	NA	exonic	Iqsec3	nonsynonymous SNV	Iqsec3:NM_001033354:exon1:c.G262T:p.A88S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.970629	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
M8	chr6	121641277	12A2p6	cell line	sgMsh2	121641277	A	-	Deletion	Strelka2;Vardict	2	0.1429	203	0	0	NA	exonic	A2m	frameshift deletion	A2m:NM_175628:exon6:c.528delA:p.N179Ifs*9	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.683890883	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
M8	chr6	121840239	12A2p6	cell line	sgMsh2	121840239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	356	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon2:c.T266C:p.F89S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	2	0.6095966	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	263	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.990692	AAT	synonymous	NA	NA	NA	NA
M8	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	149	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9609468	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	546	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.751370669	2	0.9999912	CTG	synonymous	NA	NA	NA	NA
M8	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	585	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.999678	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	123742005	12A2p6	cell line	sgMsh2	123742005	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	614	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon6:c.A2316T:p.L772L	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.9389458	TAC	synonymous	NA	NA	NA	NA
M8	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	760	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.9996552	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	102	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.851872478	1	0.890658	GAT	synonymous	NA	NA	NA	NA
M8	chr6	124317988	12A2p6	cell line	sgMsh2	124317988	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	203	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon8:c.G2010A:p.T670T,Cd163:NM_053094:exon8:c.G2010A:p.T670T"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.8317273	CGT	synonymous	NA	NA	NA	NA
M8	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	73	31	7	0.225806452	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.934493	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	100	138	18	0.130434783	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	1	0.6280287	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	130	1	0	0	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	NA	NA	CGG	frameshift	NA	NA	NA	-1
M8	chr6	124914408	12A2p6	cell line	sgMsh2	124914408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	74	1440	10	0.006944444	exonic	Ptms	synonymous SNV	Ptms:NM_026988:exon4:c.G255A:p.E85E	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9381435	CCT	synonymous	NA	NA	NA	NA
M8	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	272	97	16	0.164948454	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	2	0.5667452	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	125555480	12A2p6	cell line	sgMsh2	125555480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	94	0	0	NA	exonic	Vwf	synonymous SNV	Vwf:NM_011708:exon3:c.T186C:p.A62A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.756156469	2	0.5942752	CTG	synonymous	CTGG	8	CTGGCTGG	NA
M8	chr6	125626311	12A2p6	cell line	sgMsh2	125626311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	119	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon20:c.T2623C:p.Y875H	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	1	0.9316126	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	372	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.622154057	2	2.28E-09	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	178	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.459436842	2	0.9629151	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	249	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.804014474	2	0.6777592	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	179	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.583867654	2	0.9999793	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	128433746	12A2p6	cell line	sgMsh2	128433746	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	59	1157	220	0.190146932	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon6:c.A719G:p.H240R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.722655866	2	9.05E-07	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	134	1544	262	0.169689119	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9864616	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	129419614	12A2p6	cell line	sgMsh2	129419614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	286	0	0	NA	exonic	Clec9a	nonsynonymous SNV	"Clec9a:NM_001205364:exon4:c.T443C:p.I148T,Clec9a:NM_172732:exon4:c.T446C:p.I149T,Clec9a:NM_001205363:exon5:c.T524C:p.I175T"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.727441667	2	0.9991778	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	280	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76572807	2	0.9818119	GAC	synonymous	NA	NA	NA	NA
M8	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	197	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	2	0.8820532	CCC	synonymous	NA	NA	NA	NA
M8	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	275	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	GTG	synonymous	NA	NA	NA	NA
M8	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	76	50	15	0.3	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9853613	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	112	120	10	0.083333333	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.397221436	3	0.8321049	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	106	124	10	0.080645161	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.425936239	2	0.6603277	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	270	176	27	0.153409091	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9944742	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	232	171	21	0.122807018	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.502509046	2	0.9999589	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	166	24	3	0.125	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8633471	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	202	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.6888045	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	188	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9995667	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	217	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9987381	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M8	chr6	137748709	12A2p6	cell line	sgMsh2	137748709	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	390	567	90	0.158730159	exonic	Strap	synonymous SNV	Strap:NM_011499:exon8:c.T798C:p.G266G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.9947685	GTC	synonymous	NA	NA	NA	NA
M8	chr6	138012108	12A2p6	cell line	sgMsh2	138012108	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.077	157	0	0	NA	exonic	Slc15a5	nonsynonymous SNV	Slc15a5:NM_177787:exon7:c.A1411G:p.M471V	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.368506634	3	0.9982527	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	209	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.87580148	1	0.9773241	ATT	synonymous	NA	NA	NA	NA
M8	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	188	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.641297259	2	0.9997905	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	320	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.837515077	1	0.8108	AAA	synonymous	NA	NA	NA	NA
M8	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	562	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.746584868	2	0.9999971	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	380	37	7	0.189189189	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.780085471	2	0.9897508	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	149	27	2	0.074074074	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.5267219	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	334	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	2	0.6775671	CCG	nonsynonymous	NA	NA	NA	NA
M8	chr6	142771330	12A2p6	cell line	sgMsh2	142771330	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	244	196	19	0.096938776	exonic	Cmas	nonsynonymous SNV	Cmas:NM_009908:exon6:c.G947A:p.G316D	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.502509046	2	0.9999719	GGT	nonsynonymous	NA	NA	NA	NA
M8	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.354	266	11	1	0.090909091	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M8	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	92	1	1	1	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9937872	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Strelka2;Vardict	2	0.1493	375	7	0	0	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8	chr6	149326242	12A2p6	cell line	sgMsh2	149326242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	369	108	14	0.12962963	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A785G:p.Y262C,Resf1:NM_026054:exon3:c.A785G:p.Y262C,Resf1:NM_001289661:exon4:c.A785G:p.Y262C"	6qG3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	264	90	21	0.233333333	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	152	183	56	0.306010929	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997719	CGA	nonsynonymous	NA	NA	NA	NA
M8	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	99	47	18	0.382978723	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9977469	CAG	synonymous	NA	NA	NA	NA
M8	chr7	3667541	12A2p6	cell line	sgMsh2	3667541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	44	4	1	0.25	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon11:c.T1550C:p.L517P	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	83	2	1	0.5	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9938247	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	3842009	12A2p6	cell line	sgMsh2	3842009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	164	0	0	NA	exonic	Pira2;Pira4;Pira7	nonsynonymous SNV	"Pira2:NM_001379689:exon6:c.A1246G:p.I416V,Pira2:NM_011089:exon6:c.A1249G:p.I417V,Pira4:NM_011091:exon6:c.A1249G:p.I417V,Pira7:NM_011094:exon6:c.A1249G:p.I417V"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	473	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.21E-09	CCT	synonymous	NA	NA	NA	NA
M8	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	214	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	30	1	0	0	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M8	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	158	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	80	76	20	0.263157895	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8613583	CGC	nonsynonymous	NA	NA	NA	NA
M8	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	283	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	180	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	TTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	516	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.03E-09	AGC	synonymous	NA	NA	NA	NA
M8	chr7	6060603	12A2p6	cell line	sgMsh2	6060603	T	-	Deletion	Strelka2;Vardict	2	0.1574	197	0	0	NA	exonic	Nlrp4c	frameshift deletion	Nlrp4c:NM_031389:exon2:c.9delT:p.S6Lfs*8	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.753284989	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M8	chr7	6132720	12A2p6	cell line	sgMsh2	6132720	G	T	SNV	Mutect2;Strelka2	2	0.266	14	22	6	0.272727273	exonic	Zfp787	synonymous SNV	"Zfp787:NM_001013012:exon3:c.C531A:p.P177P,Zfp787:NM_001379300:exon3:c.C531A:p.P177P,Zfp787:NM_001379298:exon4:c.C438A:p.P146P,Zfp787:NM_001379299:exon4:c.C438A:p.P146P"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9180531	AGG	synonymous	NA	NA	NA	NA
M8	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	383	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.14E-08	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9991578	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	253	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999971	CCC	synonymous	NA	NA	NA	NA
M8	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	218	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	142	6	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	210	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.789657072	2	0.7625364	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M8	chr7	12260215	12A2p6	cell line	sgMsh2	12260215	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	324	0	0	NA	exonic	Vmn1r81	frameshift deletion	Vmn1r81:NM_134210:exon1:c.465delC:p.T156Lfs*5	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M8	chr7	12305079	12A2p6	cell line	sgMsh2	12305079	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.289	236	0	0	NA	exonic	Vmn1r82	frameshift deletion	Vmn1r82:NM_134234:exon1:c.275delG:p.V94Ffs*8	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	127	529	116	0.219281664	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	78	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9944304	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	31	401	93	0.2319202	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9589837	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	196	115	30	0.260869565	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999966	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	56	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9857023	TGA	synonymous	NA	NA	NA	NA
M8	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	292	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	ACA	synonymous	NA	NA	NA	NA
M8	chr7	18680927	12A2p6	cell line	sgMsh2	18680927	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	372	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.C1042A:p.L348M	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.78E-08	AGC	nonsynonymous	AGC	8	AGCAGCAG	NA
M8	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	105	87	21	0.24137931	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998261	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	19586363	12A2p6	cell line	sgMsh2	19586363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	46	4	1	0.25	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon13:c.T1369C:p.Y457H	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9479441	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	19619595	12A2p6	cell line	sgMsh2	19619595	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	43	47	11	0.234042553	exonic	Relb	synonymous SNV	Relb:NM_001290457:exon3:c.C348A:p.R116R	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9751795	AGC	synonymous	NA	NA	NA	NA
M8	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	155	188	31	0.164893617	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9977503	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.172	244	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.6418001	CAG	synonymous	NA	NA	NA	NA
M8	chr7	24422308	12A2p6	cell line	sgMsh2	24422308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	120	34	5	0.147058824	exonic	Smg9	nonsynonymous SNV	Smg9:NM_028047:exon14:c.A1493G:p.Y498C	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9989441	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	25079949	12A2p6	cell line	sgMsh2	25079949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	53	33	7	0.212121212	exonic	Zfp574	nonsynonymous SNV	"Zfp574:NM_175477:exon2:c.A395C:p.K132T,Zfp574:NM_001168506:exon3:c.A395C:p.K132T"	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.8031046	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	115	2	1	0.5	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	CGC	synonymous	C	5	CCCCC	NA
M8	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	63	40	6	0.15	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	77	30	5	0.166666667	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9904666	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	43	146	31	0.212328767	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9751795	AGG	synonymous	NA	NA	NA	NA
M8	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	37	72	15	0.208333333	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.770513871	1	0.7489405	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M8	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	214	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999844	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	90	12	4	0.333333333	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9966781	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M8	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	65	18	1	0.055555556	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.973594	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	28153054	12A2p6	cell line	sgMsh2	28153054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	80	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon11:c.A4001G:p.Q1334R	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	175	175	42	0.24	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	28395855	12A2p6	cell line	sgMsh2	28395855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	203	77	23	0.298701299	exonic	Paf1	synonymous SNV	Paf1:NM_019458:exon6:c.T444C:p.N148N	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	ATG	synonymous	NA	NA	NA	NA
M8	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	62	2	0	0	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	28796692	12A2p6	cell line	sgMsh2	28796692	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	29	0	0	NA	exonic	Rinl	nonsynonymous SNV	"Rinl:NM_001358916:exon9:c.A1097G:p.E366G,Rinl:NM_177158:exon9:c.A1097G:p.E366G"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.8409143	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	141	551	142	0.257713249	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8627714	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	168	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9995785	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	29	2	0	0	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9554425	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M8	chr7	29140373	12A2p6	cell line	sgMsh2	29140373	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.123	46	0	0	NA	exonic	Rasgrp4	nonsynonymous SNV	"Rasgrp4:NM_001174155:exon5:c.T509C:p.L170P,Rasgrp4:NM_145149:exon5:c.T509C:p.L170P"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.588653454	2	0.000861888	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	29293306	12A2p6	cell line	sgMsh2	29293306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	20	7	2	0.285714286	exonic	Ppp1r14a	synonymous SNV	Ppp1r14a:NM_026731:exon4:c.T432C:p.T144T	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9355995	CTG	synonymous	NA	NA	NA	NA
M8	chr7	30270178	12A2p6	cell line	sgMsh2	30270178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	52	3	0	0	exonic	Wdr62	frameshift deletion	Wdr62:NM_146186:exon7:c.853delA:p.R285Gfs*8	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	96	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	CTG	synonymous	NA	NA	NA	NA
M8	chr7	30583737	12A2p6	cell line	sgMsh2	30583737	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	206	78	8	0.102564103	exonic	Kmt2b	synonymous SNV	"Kmt2b:NM_001290573:exon7:c.G3036A:p.K1012K,Kmt2b:NM_029274:exon7:c.G3036A:p.K1012K"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999779	TCT	synonymous	NA	NA	NA	NA
M8	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	104	713	83	0.116409537	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9976341	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	334	60	3	0.05	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.204	292	76	1	0.013157895	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	NA	NA	GCC	frameshift	NA	NA	NA	-1
M8	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	92	40	5	0.125	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	CAT	synonymous	NA	NA	NA	NA
M8	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	88	24	3	0.125	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	GCT	synonymous	NA	NA	NA	NA
M8	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.364	42	26	5	0.192307692	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	ATA	synonymous	NA	NA	NA	NA
M8	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	172	14	4	0.285714286	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999904	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M8	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	208	73	15	0.205479452	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999798	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	123	31	12	0.387096774	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	36771068	12A2p6	cell line	sgMsh2	36771068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	155	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.A2481G:p.T827T	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.909302083	1	0.9907777	CAT	synonymous	NA	NA	NA	NA
M8	chr7	37493751	12A2p6	cell line	sgMsh2	37493751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	64	0	0	NA	exonic	Zfp536	nonsynonymous SNV	Zfp536:NM_172385:exon5:c.G2264A:p.C755Y	7qB2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.989842	GCA	nonsynonymous	NA	NA	NA	NA
M8	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	544	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.01E-09	TAC	synonymous	NA	NA	NA	NA
M8	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	109	10	6	0.6	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	136	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	50	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	CAG	synonymous	NA	NA	NA	NA
M8	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	82	90	21	0.233333333	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	44614330	12A2p6	cell line	sgMsh2	44614330	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	51	3	0	0	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon34:c.T5084G:p.L1695R,Myh14:NM_001271538:exon35:c.T5207G:p.L1736R,Myh14:NM_001271540:exon36:c.T5108G:p.L1703R"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	1	0.6655259	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	181	88	10	0.113636364	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9989021	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	44943424	12A2p6	cell line	sgMsh2	44943424	-	A	Insertion	Strelka2;Vardict	2	0.186	43	0	0	NA	exonic	Tsks	frameshift insertion	"Tsks:NM_001077591:exon1:c.142dupA:p.K51Efs*75,Tsks:NM_011651:exon1:c.142dupA:p.K51Efs*75"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	NA	NA	CGA	frameshift	A	8	AAAAAAAA	1
M8	chr7	44991432	12A2p6	cell line	sgMsh2	44991432	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	30	38	10	0.263157895	exonic	Bcl2l12	nonsynonymous SNV	Bcl2l12:NM_029410:exon7:c.C740T:p.P247L	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.952374287	1	0.9381111	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	45046048	12A2p6	cell line	sgMsh2	45046048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	51	43	14	0.325581395	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon5:c.T3993C:p.P1331P	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9823113	AAG	synonymous	NA	NA	NA	NA
M8	chr7	45048510	12A2p6	cell line	sgMsh2	45048510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	71	55	10	0.181818182	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon4:c.T1980C:p.G660G	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	CAC	synonymous	CACC	8	CACCCACC	NA
M8	chr7	45134503	12A2p6	cell line	sgMsh2	45134503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	87	5	2	0.4	exonic	Flt3l	nonsynonymous SNV	Flt3l:NM_013520:exon5:c.A215G:p.K72R	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	81	2	1	0.5	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CAT	synonymous	NA	NA	NA	NA
M8	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	180	2	0	0	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	212	1	0	0	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999983	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	44	18	5	0.277777778	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	46301136	12A2p6	cell line	sgMsh2	46301136	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.122	43	1	0	0	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon45:c.A7486G:p.T2496A	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.583867654	2	0.7701916	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	97	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CCT	synonymous	CTG	8	CTGCTGCT	NA
M8	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	120	94	26	0.276595745	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9723291	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.205	78	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9916911	GGA	nonsynonymous	NA	NA	NA	NA
M8	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.205	78	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9916911	ATA	synonymous	NA	NA	NA	NA
M8	chr7	49911888	12A2p6	cell line	sgMsh2	49911888	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	42	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.T167G:p.F56C,Slc6a5:NM_001146013:exon2:c.T191G:p.F64C"	7qB4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	144	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	GTG	synonymous	GT	8	GTGTGTGT	NA
M8	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	190	100	23	0.23	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999559	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr7	56106360	12A2p6	cell line	sgMsh2	56106360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	86	64	12	0.1875	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon16:c.C2147A:p.A716D,Herc2:NM_010418:exon16:c.C2147A:p.A716D"	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	98	84	6	0.071428571	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	AAG	synonymous	NA	NA	NA	NA
M8	chr7	56729649	12A2p6	cell line	sgMsh2	56729649	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	146	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon8:c.C1004T:p.A335V	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.832729276	1	0.8112123	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr7	57381718	12A2p6	cell line	sgMsh2	57381718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	145	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon2:c.G73T:p.D25Y	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996913	TCT	nonsynonymous	TCT	9	TCTTCTTCT	NA
M8	chr7	58807466	12A2p6	cell line	sgMsh2	58807466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	199	46	12	0.260869565	exonic	Atp10a	synonymous SNV	Atp10a:NM_009728:exon13:c.A2712G:p.T904T	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CAG	synonymous	NA	NA	NA	NA
M8	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	180	183	28	0.153005464	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	59999380	12A2p6	cell line	sgMsh2	59999380	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	107	0	0	NA	exonic	Snurf	nonsynonymous SNV	Snurf:NM_033174:exon2:c.G48T:p.Q16H	7qB5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9963416	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	62418901	12A2p6	cell line	sgMsh2	62418901	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	110	3	0	0	exonic	Mkrn3	nonsynonymous SNV	Mkrn3:NM_011746:exon1:c.C1141T:p.R381C	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	CGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Strelka2;Vardict	2	0.1786	28	2	0	0	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.854743958	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	372	2	1	0.5	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.78E-08	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	67295436	12A2p6	cell line	sgMsh2	67295436	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	128	135	27	0.2	exonic	Mef2a	nonsynonymous SNV	"Mef2a:NM_001033713:exon4:c.T197G:p.L66R,Mef2a:NM_001291191:exon4:c.T197G:p.L66R,Mef2a:NM_001291192:exon4:c.T197G:p.L66R,Mef2a:NM_001291195:exon4:c.T197G:p.L66R,Mef2a:NM_001357324:exon4:c.T197G:p.L66R,Mef2a:NM_001357325:exon4:c.T197G:p.L66R"	7qC	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	153	83	26	0.313253012	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	CAG	synonymous	AGA	8	AGAAGAAG	NA
M8	chr7	79750149	12A2p6	cell line	sgMsh2	79750149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	151	0	0	NA	exonic	Wdr93	nonsynonymous SNV	"Wdr93:NM_001037927:exon3:c.A485G:p.D162G,Wdr93:NM_001381990:exon3:c.A485G:p.D162G,Wdr93:NM_001381991:exon3:c.A485G:p.D162G,Wdr93:NM_001381992:exon4:c.A485G:p.D162G"	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.942802686	1	0.9974879	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	80220860	12A2p6	cell line	sgMsh2	80220860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	99	237	62	0.261603376	exonic	Sema4b	nonsynonymous SNV	"Sema4b:NM_001360135:exon12:c.T1555C:p.C519R,Sema4b:NM_013659:exon13:c.T1555C:p.C519R"	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9907735	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	46	48	14	0.291666667	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.978134	GCC	synonymous	NA	NA	NA	NA
M8	chr7	80284023	12A2p6	cell line	sgMsh2	80284023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	154	43	16	0.372093023	exonic	Vps33b	nonsynonymous SNV	Vps33b:NM_178070:exon9:c.G647A:p.S216N	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	61	59	18	0.305084746	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9884508	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	117	990	266	0.268686869	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	39	33	6	0.181818182	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.732227467	1	0.6562059	CAT	synonymous	NA	NA	NA	NA
M8	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	95	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	169	14	1	0.071428571	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9997384	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	57	4	0	0	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9862992	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	81484462	12A2p6	cell line	sgMsh2	81484462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	189	0	0	NA	exonic	Ap3b2	synonymous SNV	Ap3b2:NM_021492:exon4:c.T324C:p.A108A	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9999046	GAG	synonymous	NA	NA	NA	NA
M8	chr7	82611790	12A2p6	cell line	sgMsh2	82611790	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	106	0	0	NA	exonic	Adamtsl3	nonsynonymous SNV	Adamtsl3:NM_001190374:exon29:c.G4931A:p.G1644E	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9983345	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	83636765	12A2p6	cell line	sgMsh2	83636765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.295	110	34	4	0.117647059	exonic	Stard5	synonymous SNV	Stard5:NM_023377:exon4:c.C297T:p.S99S	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	GCA	synonymous	NA	NA	NA	NA
M8	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	235	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.813586075	1	0.5035762	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	430	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.37E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M8	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	186	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	345	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
M8	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.261	214	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M8	chr7	86802040	12A2p6	cell line	sgMsh2	86802040	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	399	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon3:c.G1133T:p.W378L	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	6.23E-09	TGG	nonsynonymous	T	5	TTTTT	NA
M8	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	366	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.28E-08	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	132	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	TAA	synonymous	A	5	AAAAA	NA
M8	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	135	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995243	ATT	nonsynonymous	A	5	AAAAA	NA
M8	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	224	7	0	0	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999899	TCG	nonsynonymous	NA	NA	NA	NA
M8	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	111	35	30	0.857142857	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.998658	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	126	43	28	0.651162791	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	59	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9874204	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	65	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9902678	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	121	37	7	0.189189189	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991288	CAG	synonymous	CAG	8	CAGCAGCA	NA
M8	chr7	100497160	12A2p6	cell line	sgMsh2	100497160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	66	265	90	0.339622642	exonic	Ucp2	synonymous SNV	Ucp2:NM_011671:exon4:c.T192C:p.G64G	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	1	0.7234097	GTA	synonymous	NA	NA	NA	NA
M8	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	77	1	0	0	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9858096	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	102134772	12A2p6	cell line	sgMsh2	102134772	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	138	165	43	0.260606061	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon23:c.C3352T:p.P1118S,Nup98:NM_001287165:exon23:c.C3301T:p.P1101S,Nup98:NM_022979:exon23:c.C3352T:p.P1118S"	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9152049	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	102185875	12A2p6	cell line	sgMsh2	102185875	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	184	36	0.195652174	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon7:c.C770T:p.T257I,Nup98:NM_001287165:exon7:c.C770T:p.T257I,Nup98:NM_001287166:exon7:c.C770T:p.T257I,Nup98:NM_001287167:exon7:c.C770T:p.T257I,Nup98:NM_022979:exon7:c.C770T:p.T257I"	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9941856	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	85	105	27	0.257142857	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	158	105	25	0.238095238	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.866229879	1	0.9465533	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	117	125	30	0.24	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989644	GTT	synonymous	NA	NA	NA	NA
M8	chr7	102460380	12A2p6	cell line	sgMsh2	102460380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	174	175	34	0.194285714	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon13:c.T1410C:p.T470T	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	CTA	synonymous	NA	NA	NA	NA
M8	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	169	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	229	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	230	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999922	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr7	103359189	12A2p6	cell line	sgMsh2	103359189	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	205	0	0	NA	exonic	Olfr601	nonsynonymous SNV	Olfr601:NM_146314:exon1:c.G4T:p.G2W	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.999567	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	507	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.05E-09	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	161	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998455	GTA	synonymous	NA	NA	NA	NA
M8	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	153	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	ATG	synonymous	NA	NA	NA	NA
M8	chr7	103716732	12A2p6	cell line	sgMsh2	103716732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	381	0	0	NA	exonic	Olfr243	nonsynonymous SNV	Olfr243:NM_001025386:exon1:c.T137C:p.L46P	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.24E-08	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr7	103767449	12A2p6	cell line	sgMsh2	103767449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	229	0	0	NA	exonic	Olfr69	nonsynonymous SNV	Olfr69:NM_013621:exon3:c.T947C:p.L316P	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999918	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	104179892	12A2p6	cell line	sgMsh2	104179892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	266	0	0	NA	exonic	Olfr648	nonsynonymous SNV	Olfr648:NM_146751:exon1:c.G515A:p.R172K	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9999968	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	104306975	12A2p6	cell line	sgMsh2	104306975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.53	194	0	0	NA	exonic	Trim12a	synonymous SNV	"Trim12a:NM_001368753:exon2:c.G357A:p.E119E,Trim12a:NM_001368754:exon2:c.G357A:p.E119E,Trim12a:NM_023835:exon2:c.G357A:p.E119E"	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999629	GCT	synonymous	NA	NA	NA	NA
M8	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	481	14	0	0	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	194	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9964999	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	322	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	TCC	synonymous	NA	NA	NA	NA
M8	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	500	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.07E-09	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	104975446	12A2p6	cell line	sgMsh2	104975446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	303	0	0	NA	exonic	Olfr671	nonsynonymous SNV	Olfr671:NM_001011755:exon1:c.T538C:p.Y180H	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	TAA	nonsynonymous	AGTA	8	AGTAAGTA	NA
M8	chr7	105035532	12A2p6	cell line	sgMsh2	105035532	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.234	281	0	0	NA	exonic	Olfr676	frameshift insertion	Olfr676:NM_147095:exon1:c.334dupT:p.I114Yfs*17	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TCT	frameshift	T	5	TTTTT	1
M8	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	124	34	8	0.235294118	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	GAT	synonymous	NA	NA	NA	NA
M8	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	97	41	1	0.024390244	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8	chr7	106824071	12A2p6	cell line	sgMsh2	106824071	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	171	0	0	NA	exonic	Olfr702	nonsynonymous SNV	Olfr702:NM_146597:exon2:c.G454T:p.G152W	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998997	CCA	nonsynonymous	NA	NA	NA	NA
M8	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	321	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	CCT	synonymous	NA	NA	NA	NA
M8	chr7	106944356	12A2p6	cell line	sgMsh2	106944356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	178	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T644C:p.L215P	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	106956664	12A2p6	cell line	sgMsh2	106956664	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	264	0	0	NA	exonic	Olfr6	nonsynonymous SNV	Olfr6:NM_206897:exon1:c.T271G:p.S91A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999982	GAA	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
M8	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	212	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999983	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	287	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	107845395	12A2p6	cell line	sgMsh2	107845395	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	412	0	0	NA	exonic	Olfr470	nonsynonymous SNV	Olfr470:NM_146425:exon1:c.C337A:p.L113I	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.98E-09	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	481	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.15E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M8	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	367	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.19E-08	AAA	synonymous	AATG	8	AATGAATG	NA
M8	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	269	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999986	ATG	nonsynonymous	G	5	GGGGG	NA
M8	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	201	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	302	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	473	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.21E-09	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	108346260	12A2p6	cell line	sgMsh2	108346260	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	577	0	0	NA	exonic	Olfr493	synonymous SNV	Olfr493:NM_146310:exon1:c.C720A:p.A240A	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M8	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.235	439	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.93E-09	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	126	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992981	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	109	7	0	0	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	285	291	51	0.175257732	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999993	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	210	266	45	0.169172932	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	200	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999714	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	218	32	6	0.1875	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9842101	AAC	synonymous	NA	NA	NA	NA
M8	chr7	120133911	12A2p6	cell line	sgMsh2	120133911	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	124	0	0	NA	exonic	Zp2	synonymous SNV	"Zp2:NM_001374631:exon15:c.C1806T:p.S602S,Zp2:NM_011775:exon15:c.C1806T:p.S602S"	7qF2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	GGC	synonymous	NA	NA	NA	NA
M8	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	41	112	30	0.267857143	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9729973	TAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	107	3	0	0	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9984049	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr7	126495466	12A2p6	cell line	sgMsh2	126495466	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	94	440	104	0.236363636	exonic	Atxn2l	nonsynonymous SNV	"Atxn2l:NM_001347658:exon14:c.G1600T:p.G534W,Atxn2l:NM_001361487:exon14:c.G1840T:p.G614W,Atxn2l:NM_183020:exon14:c.G1858T:p.G620W"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9972044	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	97	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	125	24	4	0.166666667	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr7	127666921	12A2p6	cell line	sgMsh2	127666921	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	45	4	0	0	exonic	Bcl7c	synonymous SNV	Bcl7c:NM_001347652:exon6:c.A654G:p.E218E	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9771895	GTT	synonymous	NA	NA	NA	NA
M8	chr7	127799142	12A2p6	cell line	sgMsh2	127799142	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	119	97	6	0.06185567	exonic	Setd1a	nonsynonymous SNV	Setd1a:NM_178029:exon18:c.A4891G:p.S1631G	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.684369463	2	0.9643385	CAG	nonsynonymous	GCA	8	GCAGCAGC	NA
M8	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	46	35	9	0.257142857	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.978134	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	235	171	31	0.18128655	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999937	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	122	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	128190041	12A2p6	cell line	sgMsh2	128190041	C	A	SNV	Mutect2;Vardict	2	0.059	184	0	0	NA	exonic	Itgad	nonsynonymous SNV	Itgad:NM_001029872:exon15:c.C1676A:p.P559H	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.282362226	3	1.02E-08	CCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	128271182	12A2p6	cell line	sgMsh2	128271182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	134	0	0	NA	exonic	Slc5a2	nonsynonymous SNV	Slc5a2:NM_133254:exon12:c.C1591T:p.L531F	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	60	30	7	0.233333333	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.923659485	1	0.9591288	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	162	123	26	0.211382114	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999852	CAC	synonymous	NA	NA	NA	NA
M8	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	136	134	19	0.141791045	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995445	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	210	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr7	133725212	12A2p6	cell line	sgMsh2	133725212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	118	80	19	0.2375	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon7:c.T1139C:p.M380T,Dhx32:NM_001286030:exon8:c.T1559C:p.M520T,Dhx32:NM_001286031:exon8:c.T1559C:p.M520T,Dhx32:NM_001357685:exon8:c.T1514C:p.M505T,Dhx32:NM_133941:exon8:c.T1559C:p.M520T"	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990082	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	120	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M8	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	78	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.617368257	2	0.9509224	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	211	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999822	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.358	86	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M8	chr7	141466182	12A2p6	cell line	sgMsh2	141466182	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.308	48	4	0	0	exonic	Cracr2b	frameshift deletion	Cracr2b:NM_001025103:exon10:c.1144delC:p.R384Dfs*83	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	148	2	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	161	3	0	0	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.856658279	1	0.9222671	GTT	synonymous	NA	NA	NA	NA
M8	chr7	141810047	12A2p6	cell line	sgMsh2	141810047	A	T	SNV	Mutect2;Strelka2;MuSe	3	0.227	44	1	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon31:c.A7091T:p.N2364I	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	143261306	12A2p6	cell line	sgMsh2	143261306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	127	2	0	0	exonic	Kcnq1	nonsynonymous SNV	Kcnq1:NM_008434:exon11:c.A1441G:p.T481A	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993278	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M8	chr7	143781605	12A2p6	cell line	sgMsh2	143781605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	84	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T160C:p.F54L	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	143781688	12A2p6	cell line	sgMsh2	143781688	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	96	0	0	NA	exonic	Mrgpre	nonsynonymous SNV	Mrgpre:NM_175534:exon2:c.T77A:p.L26H	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	130	272	69	0.253676471	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	149	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-3489139-145323643	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	GTA	synonymous	NA	NA	NA	NA
M8	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	282	67	9	0.134328358	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999992	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	3688331	12A2p6	cell line	sgMsh2	3688331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	153	0	0	NA	exonic	Fcer2a	nonsynonymous SNV	"Fcer2a:NM_001253745:exon5:c.A275G:p.N92S,Fcer2a:NM_001253746:exon5:c.A275G:p.N92S,Fcer2a:NM_001253737:exon6:c.A338G:p.N113S,Fcer2a:NM_001253739:exon6:c.A338G:p.N113S,Fcer2a:NM_001253747:exon6:c.A221G:p.N74S,Fcer2a:NM_001253743:exon7:c.A260G:p.N87S,Fcer2a:NM_013517:exon7:c.A341G:p.N114S"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	204	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999759	GTA	synonymous	NA	NA	NA	NA
M8	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	443	373	88	0.235924933	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.78E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M8	chr8	10506522	12A2p6	cell line	sgMsh2	10506522	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.351	115	0	0	NA	exonic	Myo16	frameshift deletion	Myo16:NM_001319151:exon26:c.2982delA:p.K996Rfs*73	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	302	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AAG	synonymous	NA	NA	NA	NA
M8	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	126	47	8	0.170212766	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.9745864	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	207	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999789	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	86	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9960531	TCG	synonymous	NA	NA	NA	NA
M8	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	154	99	15	0.151515152	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997908	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr8	15129170	12A2p6	cell line	sgMsh2	15129170	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	199	0	0	NA	exonic	Myom2	nonsynonymous SNV	Myom2:NM_008664:exon34:c.A4001C:p.K1334T	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	132	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994585	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	103	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	1	0.964826	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	30	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9572481	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	120	1	1	1	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr8	22940316	12A2p6	cell line	sgMsh2	22940316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	148	63	17	0.26984127	exonic	Kat6a	nonsynonymous SNV	"Kat6a:NM_001364449:exon17:c.A5686G:p.M1896V,Kat6a:NM_001081149:exon18:c.A5686G:p.M1896V"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997289	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	264	1	0	0	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999982	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.22	204	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M8	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	94	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.612582456	2	0.9831514	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr8	25594044	12A2p6	cell line	sgMsh2	25594044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	234	10	0	0	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon3:c.A170G:p.Y57C,Letm2:NM_173012:exon3:c.A170G:p.Y57C"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	ATA	nonsynonymous	NA	NA	NA	NA
M8	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	173	27	9	0.333333333	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999908	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	109	19	5	0.263157895	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr8	28760836	12A2p6	cell line	sgMsh2	28760836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	98	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.A802G:p.R268G,Unc5d:NM_153135:exon6:c.A802G:p.R268G"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	28760842	12A2p6	cell line	sgMsh2	28760842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	98	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.T796C:p.C266R,Unc5d:NM_153135:exon6:c.T796C:p.C266R"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	110	109	27	0.247706422	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985987	GGG	synonymous	NA	NA	NA	NA
M8	chr8	35588770	12A2p6	cell line	sgMsh2	35588770	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	79	25	3	0.12	exonic	Mfhas1	nonsynonymous SNV	"Mfhas1:NM_001081279:exon1:c.T398C:p.L133P,Mfhas1:NM_001364259:exon1:c.T398C:p.L133P"	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	128	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.971517489	1	0.9982599	GTT	synonymous	NA	NA	NA	NA
M8	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	189	104	29	0.278846154	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999954	CTA	synonymous	NA	NA	NA	NA
M8	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	586	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	691	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	191	476	97	0.203781513	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999578	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	194	41	9	0.219512195	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9797054	CAC	synonymous	NA	NA	NA	NA
M8	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	191	72	18	0.25	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999578	TTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	46599811	12A2p6	cell line	sgMsh2	46599811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	191	62	18	0.290322581	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon6:c.T464C:p.V155A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999578	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	92	79	3	0.037974684	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M8	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	98	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9976475	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.2	135	44	0	0	exonic;splicing	Aga;Aga	frameshift deletion	Aga:NM_001005847:exon7:c.706delG:p.D237Ifs*36	8qB1.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	NA	NA	AGG	frameshift	NA	NA	NA	-1
M8	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	226	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999907	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	218	1	0	0	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	213	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.999951	TGT	nonsynonymous	NA	NA	NA	NA
M8	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	140	54	11	0.203703704	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.966731689	1	0.9986345	ACG	nonsynonymous	NA	NA	NA	NA
M8	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	163	56	7	0.125	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998583	ATA	synonymous	NA	NA	NA	NA
M8	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	71	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	66480367	12A2p6	cell line	sgMsh2	66480367	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	179	141	26	0.184397163	exonic	Tma16	nonsynonymous SNV	"Tma16:NM_001357208:exon5:c.C172T:p.R58W,Tma16:NM_025465:exon5:c.C361T:p.R121W"	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999291	CGC	nonsynonymous	CCGCTC	13	CCGCTCCCGCTCC	NA
M8	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	151	61	6	0.098360656	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9997127	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	168	26	4	0.153846154	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	205	578	136	0.235294118	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999977	CGA	synonymous	NA	NA	NA	NA
M8	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	72	64	12	0.1875	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8611721	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	81	59	9	0.152542373	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	1	0.7476066	CTG	synonymous	NA	NA	NA	NA
M8	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	168	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	85	13	5	0.384615385	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M8	chr8	72451389	12A2p6	cell line	sgMsh2	72451389	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	294	33	3	0.090909091	exonic	1700030K09Rik	nonsynonymous SNV	1700030K09Rik:NM_028170:exon4:c.A1043C:p.D348A	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999995	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	72461491	12A2p6	cell line	sgMsh2	72461491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	248	137	37	0.270072993	exonic	Cherp	nonsynonymous SNV	"Cherp:NM_001359024:exon17:c.C2754A:p.N918K,Cherp:NM_138585:exon17:c.C2721A:p.N907K"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999964	AGT	nonsynonymous	NA	NA	NA	NA
M8	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	114	16	3	0.1875	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988211	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	75098779	12A2p6	cell line	sgMsh2	75098779	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	50	311	56	0.180064309	exonic	Hmox1	nonsynonymous SNV	Hmox1:NM_010442:exon4:c.T650C:p.L217P	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9815439	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	79185668	12A2p6	cell line	sgMsh2	79185668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	124	71	15	0.211267606	exonic	Zfp827	synonymous SNV	"Zfp827:NM_001294279:exon12:c.A2922G:p.S974S,Zfp827:NM_178267:exon12:c.A2922G:p.S974S"	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	CAG	synonymous	NA	NA	NA	NA
M8	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	116	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	59	130	19	0.146153846	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9550449	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M8	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	143	85	22	0.258823529	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	2	0.5074379	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	84566156	12A2p6	cell line	sgMsh2	84566156	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	34	19	7	0.368421053	exonic	Cacna1a	nonsynonymous SNV	"Cacna1a:NM_001252059:exon19:c.A3031C:p.S1011R,Cacna1a:NM_001252060:exon20:c.A3172C:p.S1058R,Cacna1a:NM_001252061:exon20:c.A3172C:p.S1058R,Cacna1a:NM_007578:exon20:c.A3172C:p.S1058R"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9637945	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	84662473	12A2p6	cell line	sgMsh2	84662473	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	68	279	55	0.197132616	exonic	Ier2	synonymous SNV	Ier2:NM_010499:exon1:c.C279T:p.P93P	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9684381	TGG	synonymous	NA	NA	NA	NA
M8	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	82	80	11	0.1375	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	221	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	95	60	11	0.183333333	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	TTT	nonsynonymous	G	5	GGGGG	NA
M8	chr8	90933086	12A2p6	cell line	sgMsh2	90933086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	123	30	8	0.266666667	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon1:c.C673T:p.L225F,Chd9:NM_177224:exon3:c.C673T:p.L225F"	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992009	TCT	nonsynonymous	NA	NA	NA	NA
M8	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	264	11	0	0	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999982	ATC	synonymous	NA	NA	NA	NA
M8	chr8	92873078	12A2p6	cell line	sgMsh2	92873078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	203	15	11	0.733333333	exonic	Lpcat2	nonsynonymous SNV	Lpcat2:NM_173014:exon5:c.A673G:p.N225D	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999749	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	199	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999701	CAA	synonymous	NA	NA	NA	NA
M8	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	120	45	11	0.244444444	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990903	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	73	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9930949	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	94575821	12A2p6	cell line	sgMsh2	94575822	AG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	45	155	32	0.206451613	exonic	Psme3ip1	stopgain	"Psme3ip1:NM_001363456:exon8:c.580_581del:p.L194Efs*28,Psme3ip1:NM_001363457:exon8:c.578_579del:p.S193fs*0,Psme3ip1:NM_028221:exon8:c.580_581del:p.L194Efs*28"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAG	nonsynonymous	NA	NA	NA	-2
M8	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	101	130	9	0.069230769	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.988686	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	140	290	48	0.165517241	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	CTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	262	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	202	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999738	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	62	146	27	0.184931507	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9889343	TCG	nonsynonymous	NA	NA	NA	NA
M8	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	133	162	16	0.098765432	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	CTT	synonymous	NA	NA	NA	NA
M8	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	375	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.58E-08	GAC	synonymous	NA	NA	NA	NA
M8	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	125	334	76	0.22754491	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992671	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	105386798	12A2p6	cell line	sgMsh2	105386798	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	126	0	0	NA	exonic	Kctd19	frameshift deletion	"Kctd19:NM_001301173:exon12:c.2173delA:p.R725Efs*4,Kctd19:NM_177791:exon13:c.2242delA:p.R748Efs*4"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.885373081	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr8	105395284	12A2p6	cell line	sgMsh2	105395284	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	31	0	0	NA	exonic	Kctd19	nonsynonymous SNV	"Kctd19:NM_001301173:exon4:c.G630T:p.E210D,Kctd19:NM_177791:exon4:c.G630T:p.E210D"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9589837	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr8	105698328	12A2p6	cell line	sgMsh2	105698328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	171	26	8	0.307692308	exonic	Acd	synonymous SNV	"Acd:NM_001348349:exon9:c.G606A:p.R202R,Acd:NM_001012638:exon11:c.G1179A:p.R393R"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.990660691	1	0.9998449	GCC	synonymous	NA	NA	NA	NA
M8	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	102	21	4	0.19047619	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9980205	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	132	37	1	0.027027027	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8	chr8	105847048	12A2p6	cell line	sgMsh2	105847048	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.208	129	26	1	0.038461538	exonic	Cenpt	frameshift insertion	Cenpt:NM_177150:exon8:c.848_849insA:p.G284Wfs*2	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	NA	NA	CAG	frameshift	NA	NA	NA	1
M8	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	164	2	0	0	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998643	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	147	44	4	0.090909091	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	133	23	9	0.391304348	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994814	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	84	136	32	0.235294118	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	GGC	synonymous	NA	NA	NA	NA
M8	chr8	106161303	12A2p6	cell line	sgMsh2	106161303	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	38	38	8	0.210526316	exonic	Pla2g15	nonsynonymous SNV	Pla2g15:NM_133792:exon5:c.C722A:p.A241D	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	89	39	13	0.333333333	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9965318	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	97	79	17	0.215189873	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	180	50	11	0.22	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.976303289	1	0.9997823	GAG	synonymous	NA	NA	NA	NA
M8	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	104	74	23	0.310810811	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M8	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	461	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.36E-09	ACA	synonymous	NA	NA	NA	NA
M8	chr8	109954634	12A2p6	cell line	sgMsh2	109954634	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	45	2	0	0	exonic	Marveld3	nonsynonymous SNV	Marveld3:NM_028584:exon3:c.A628G:p.I210V	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9771895	ATC	nonsynonymous	C	5	CCCCC	NA
M8	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	169	1	0	0	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998907	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	110580829	12A2p6	cell line	sgMsh2	110580829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	117	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon70:c.A11839G:p.M3947V	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9944994	AAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	85	104	24	0.230769231	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9634396	TAC	synonymous	NA	NA	NA	NA
M8	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	160	610	130	0.213114754	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998386	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	175	12	1	0.083333333	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999157	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	95	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9973224	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	112665175	12A2p6	cell line	sgMsh2	112665175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	80	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon3:c.A271G:p.M91V	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr8	117504368	12A2p6	cell line	sgMsh2	117504368	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	74	0	0	NA	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon2:c.G188A:p.G63D	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9933853	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	80	46	9	0.195652174	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	81	115	20	0.173913043	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9951049	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M8	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	52	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9830474	GCG	nonsynonymous	NA	NA	NA	NA
M8	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	58	61	9	0.147540984	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	78	89	18	0.202247191	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.646083059	2	0.9131494	CTG	nonsynonymous	NA	NA	NA	NA
M8	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	71	1	1	1	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9924757	GGC	synonymous	NA	NA	NA	NA
M8	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	31	271	50	0.184501845	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9589837	TTG	synonymous	NA	NA	NA	NA
M8	chr8	123418184	12A2p6	cell line	sgMsh2	123418184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	93	7	2	0.285714286	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon2:c.A149G:p.Y50C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.880587281	1	0.9427497	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	130	5	1	0.2	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994096	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M8	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	84	55	8	0.145454545	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CCC	nonsynonymous	NA	NA	NA	NA
M8	chr8	123962010	12A2p6	cell line	sgMsh2	123962010	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	88	8	2	0.25	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon8:c.A1526G:p.Y509C	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	86	10	2	0.2	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.986615	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	195	76	23	0.302631579	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.933231086	1	0.9987589	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	115	161	34	0.211180124	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr8	125671610	12A2p6	cell line	sgMsh2	125671610	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	147	0	0	NA	exonic	Map10	stopgain	Map10:NM_028908:exon1:c.G1741T:p.E581X	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997169	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	44	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9762052	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr8	127415769	12A2p6	cell line	sgMsh2	127415769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	71	36	8	0.222222222	exonic	Pard3	synonymous SNV	"Pard3:NM_001013581:exon17:c.T2400C:p.V800V,Pard3:NM_001309392:exon18:c.T2760C:p.V920V,Pard3:NM_001309391:exon19:c.T2805C:p.V935V,Pard3:NM_001363431:exon19:c.T2715C:p.V905V,Pard3:NM_001363432:exon19:c.T2811C:p.V937V,Pard3:NM_033620:exon19:c.T2802C:p.V934V"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.794442873	1	0.7103481	TTG	synonymous	TGA	9	TGATGATGA	NA
M8	chr8	127474586	12A2p6	cell line	sgMsh2	127474586	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	92	22	3	0.136363636	exonic	Pard3	nonsynonymous SNV	"Pard3:NM_001309392:exon21:c.G3339T:p.K1113N,Pard3:NM_001309391:exon22:c.G3384T:p.K1128N,Pard3:NM_001363431:exon22:c.G3294T:p.K1098N,Pard3:NM_001363432:exon22:c.G3390T:p.K1130N,Pard3:NM_033620:exon22:c.G3381T:p.K1127N"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9969525	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	104	53	12	0.226415094	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	305	18	6	0.333333333	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
M8	chr9	4330693	12A2p6	cell line	sgMsh2	4330693	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	236	0	0	NA	exonic	Kbtbd3	nonsynonymous SNV	"Kbtbd3:NM_001164574:exon3:c.C1066A:p.L356I,Kbtbd3:NM_026962:exon4:c.C1066A:p.L356I"	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999994	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	134	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98587489	1	0.9991675	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	238	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999945	ATG	synonymous	GAT	8	GATGATGA	NA
M8	chr9	7002629	12A2p6	cell line	sgMsh2	7002629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	180	38	17	0.447368421	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon78:c.T11417C:p.L3806P	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999321	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	90	15	3	0.2	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9623067	TCA	synonymous	NA	NA	NA	NA
M8	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	221	426	104	0.244131455	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999885	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	9180046	12A2p6	cell line	sgMsh2	9180046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	131	42	21	0.5	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372563:exon2:c.T231C:p.T77T,Arhgap42:NM_001372564:exon2:c.T231C:p.T77T,Arhgap42:NM_001372565:exon2:c.T231C:p.T77T,Arhgap42:NM_001372566:exon2:c.T231C:p.T77T,Arhgap42:NM_001372567:exon2:c.T231C:p.T77T,Arhgap42:NM_001372568:exon2:c.T231C:p.T77T,Arhgap42:NM_001372569:exon2:c.T231C:p.T77T,Arhgap42:NM_027823:exon2:c.T231C:p.T77T"	9qA1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9994345	CAG	synonymous	TCA	9	TCATCATCA	NA
M8	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.189	172	73	16	0.219178082	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9915611	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	158	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998241	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	176	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8	chr9	18815673	12A2p6	cell line	sgMsh2	18815673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	197	0	0	NA	exonic	Olfr828	nonsynonymous SNV	Olfr828:NM_146605:exon1:c.A620G:p.N207S	9qA2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999674	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	198	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.861444079	1	0.9470773	TAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	134	44	12	0.272727273	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995033	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	21030349	12A2p6	cell line	sgMsh2	21030349	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	82	1	1	1	exonic	Icam4	synonymous SNV	Icam4:NM_001364509:exon2:c.C783A:p.T261T	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	CCT	synonymous	NA	NA	NA	NA
M8	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	97	24	3	0.125	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	CAA	nonsynonymous	A	5	AAAAA	NA
M8	chr9	21244233	12A2p6	cell line	sgMsh2	21244233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	100	0	0	NA	exonic	S1pr5	nonsynonymous SNV	S1pr5:NM_053190:exon3:c.A896G:p.N299S	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	21337927	12A2p6	cell line	sgMsh2	21337927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	140	3	1	0.333333333	exonic	Slc44a2	nonsynonymous SNV	Slc44a2:NM_152808:exon1:c.T2C:p.M1T	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996168	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	83	241	52	0.215767635	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9955087	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	21747184	12A2p6	cell line	sgMsh2	21747184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	60	182	48	0.263736264	exonic	Ldlr	synonymous SNV	"Ldlr:NM_001252658:exon16:c.C2275T:p.L759L,Ldlr:NM_001252659:exon17:c.C2428T:p.L810L,Ldlr:NM_010700:exon17:c.C2431T:p.L811L"	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	GCT	synonymous	NA	NA	NA	NA
M8	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	38	1	0	0	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9693705	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M8	chr9	26920584	12A2p6	cell line	sgMsh2	26920584	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	80	0	0	NA	exonic	Gm1110	synonymous SNV	Gm1110:NM_001281475:exon3:c.T270A:p.G90G	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9948896	CAC	synonymous	NA	NA	NA	NA
M8	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	181	14	2	0.142857143	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999349	TAC	synonymous	NA	NA	NA	NA
M8	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	129	40	8	0.2	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993835	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M8	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	42	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9741108	TCC	nonsynonymous	NA	NA	NA	NA
M8	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	112	42	8	0.19047619	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9987147	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	47	346	69	0.199421965	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.890158882	1	0.9194101	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	85	15	3	0.2	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	CGC	synonymous	NA	NA	NA	NA
M8	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	302	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	1	0.8664431	TAG	synonymous	NA	NA	NA	NA
M8	chr9	32397430	12A2p6	cell line	sgMsh2	32397430	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	225	0	0	NA	exonic	Kcnj1	nonsynonymous SNV	"Kcnj1:NM_001168354:exon2:c.A1149C:p.E383D,Kcnj1:NM_019659:exon2:c.A1089C:p.E363D"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999903	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	35124747	12A2p6	cell line	sgMsh2	35124747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	61	14	0.229508197	exonic	Dcps	nonsynonymous SNV	Dcps:NM_027030:exon6:c.C842A:p.A281D	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9953111	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	88	300	57	0.19	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.996379	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr9	35776754	12A2p6	cell line	sgMsh2	35776754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	116	0	0	NA	exonic	Pate7	synonymous SNV	Pate7:NM_001167673:exon3:c.A189G:p.T63T	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	GTG	synonymous	TGTA	8	TGTATGTA	NA
M8	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	261	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9993375	AGG	synonymous	NA	NA	NA	NA
M8	chr9	37347863	12A2p6	cell line	sgMsh2	37347863	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	119	12	7	0.583333333	exonic	Ccdc15	nonsynonymous SNV	Ccdc15:NM_001081429:exon2:c.C55A:p.L19M	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	84	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	119	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9990501	TAT	synonymous	NA	NA	NA	NA
M8	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	312	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999998	GTA	synonymous	NA	NA	NA	NA
M8	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	173	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	237	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999942	AGA	nonsynonymous	NA	NA	NA	NA
M8	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	289	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999994	TTT	synonymous	NA	NA	NA	NA
M8	chr9	38594513	12A2p6	cell line	sgMsh2	38594513	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	218	0	0	NA	exonic	Olfr913	synonymous SNV	Olfr913:NM_001011523:exon2:c.T291C:p.C97C	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999869	GTA	synonymous	NA	NA	NA	NA
M8	chr9	38606767	12A2p6	cell line	sgMsh2	38606767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	242	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.T301C:p.F101L	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999954	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	252	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999997	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	331	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
M8	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	374	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	1.64E-08	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	344	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999999	CCT	synonymous	NA	NA	NA	NA
M8	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	309	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	206	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999779	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.502	358	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.18E-08	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	275	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999989	CTG	synonymous	NA	NA	NA	NA
M8	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	363	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	2.58E-08	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	63	1	0	0	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9893978	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	150	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M8	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	36	2	2	1	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.966695	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	42377588	12A2p6	cell line	sgMsh2	42377588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	45	0	0	NA	exonic	Tecta	synonymous SNV	"Tecta:NM_001324548:exon8:c.C1680T:p.N560N,Tecta:NM_009347:exon8:c.C1680T:p.N560N,Tecta:NM_001378602:exon9:c.C1680T:p.N560N"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9771895	CGT	synonymous	NA	NA	NA	NA
M8	chr9	42521067	12A2p6	cell line	sgMsh2	42521067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	36	3	0	0	exonic	Grik4	nonsynonymous SNV	Grik4:NM_175481:exon21:c.A2633G:p.E878G	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.966695	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	193	90	11	0.122222222	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9998951	CAG	synonymous	NA	NA	NA	NA
M8	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	104	24	3	0.125	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981843	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	31	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9589837	ACG	synonymous	NA	NA	NA	NA
M8	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.344	207	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M8	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	51	33	3	0.090909091	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9823113	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	100	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.997842	TGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	103	29	5	0.172413793	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9981042	CTC	synonymous	NA	NA	NA	NA
M8	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	60	3	1	0.333333333	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	GAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	51119248	12A2p6	cell line	sgMsh2	51119248	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	84	0	0	NA	exonic	Btg4	nonsynonymous SNV	Btg4:NM_019493:exon5:c.C647T:p.S216L	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	TCG	nonsynonymous	NA	NA	NA	NA
M8	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	238	15	2	0.133333333	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999945	TTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	53375752	12A2p6	cell line	sgMsh2	53375752	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	124	7	2	0.285714286	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.G4132A:p.E1378K	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9992347	AGA	nonsynonymous	AG	9	AGAGAGAGA	NA
M8	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	273	35	3	0.085714286	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999988	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	125	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.918873684	1	0.9884434	CAT	synonymous	NA	NA	NA	NA
M8	chr9	54541132	12A2p6	cell line	sgMsh2	54541132	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	75	0	0	NA	exonic	Sh2d7	nonsynonymous SNV	Sh2d7:NM_173778:exon5:c.A958C:p.S320R	9qA5.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9936636	CAG	nonsynonymous	C	6	CCCCCC	NA
M8	chr9	54954911	12A2p6	cell line	sgMsh2	54954911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	178	350	86	0.245714286	exonic	Psma4	synonymous SNV	Psma4:NM_011966:exon6:c.C318A:p.P106P	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999259	CCT	synonymous	NA	NA	NA	NA
M8	chr9	55430309	12A2p6	cell line	sgMsh2	55430309	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	18	0	0	NA	exonic	Tmem266	nonsynonymous SNV	"Tmem266:NM_001357568:exon9:c.A428G:p.Q143R,Tmem266:NM_172923:exon9:c.A803G:p.Q268R"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9301834	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	56207126	12A2p6	cell line	sgMsh2	56207126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	107	40	10	0.25	exonic	Peak1	synonymous SNV	Peak1:NM_172924:exon7:c.C4530T:p.N1510N	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.775299671	2	0.5313653	AGT	synonymous	NA	NA	NA	NA
M8	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.025	955	126	0	0	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.119645011	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M8	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	200	82	22	0.268292683	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999714	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M8	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	35	19	4	0.210526316	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9652739	CAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	57682398	12A2p6	cell line	sgMsh2	57682398	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	97	0	0	NA	exonic	Cyp1a2	synonymous SNV	Cyp1a2:NM_009993:exon2:c.C132A:p.P44P	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9975438	AGG	synonymous	NA	NA	NA	NA
M8	chr9	57760891	12A2p6	cell line	sgMsh2	57760891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	113	135	24	0.177777778	exonic	Clk3	nonsynonymous SNV	Clk3:NM_007713:exon3:c.A302G:p.Y101C	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9938284	GTA	nonsynonymous	GGTAC	12	GGTACGGTACGG	NA
M8	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	109	2	0	0	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9985369	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.261	139	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	202	7	1	0.142857143	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999738	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	59675665	12A2p6	cell line	sgMsh2	59675665	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	35	957	234	0.244514107	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001378869:exon9:c.C1238G:p.A413G,Pkm:NM_001378870:exon9:c.C1238G:p.A413G,Pkm:NM_011099:exon9:c.C1238G:p.A413G,Pkm:NM_001378868:exon10:c.C1238G:p.A413G"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9486081	GCC	nonsynonymous	NA	NA	NA	NA
M8	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	143	2484	431	0.173510467	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	GGA	nonsynonymous	NA	NA	NA	NA
M8	chr9	60737827	12A2p6	cell line	sgMsh2	60737827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	65	0	0	NA	exonic	Larp6	nonsynonymous SNV	Larp6:NM_026235:exon3:c.A1249G:p.M417V	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.914087884	1	0.9568007	CAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	195	59	13	0.220338983	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999645	GTA	nonsynonymous	NA	NA	NA	NA
M8	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	24	5	0.208333333	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	38	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9629762	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	65594470	12A2p6	cell line	sgMsh2	65594470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	58	7	1	0.142857143	exonic	Pif1	synonymous SNV	"Pif1:NM_172453:exon11:c.T1746C:p.R582R,Pif1:NM_001357526:exon12:c.T1746C:p.R582R,Pif1:NM_001357527:exon12:c.T1746C:p.R582R"	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9868716	GTA	synonymous	NA	NA	NA	NA
M8	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	239	78	17	0.217948718	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999947	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	115	35	10	0.285714286	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9894226	GTA	synonymous	NA	NA	NA	NA
M8	chr9	66451385	12A2p6	cell line	sgMsh2	66451385	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	210	31	9	0.290322581	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon38:c.G7747T:p.G2583W	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999814	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	144	26	6	0.230769231	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M8	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	215	14	4	0.285714286	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.904516283	1	0.9959512	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	74	21	0	0	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.928445285	1	0.9725093	GGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.408	153	118	66	0.559322034	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	GCT	synonymous	NA	NA	NA	NA
M8	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	145	114	29	0.254385965	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996913	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	153	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997816	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	144	117	26	0.222222222	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996777	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	128	28	7	0.25	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9993562	AAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	141	485	2	0.004123711	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.33022023	3	0.9998805	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	214	45	12	0.266666667	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999844	AAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	186	1	1	1	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999476	ATG	nonsynonymous	NA	NA	NA	NA
M8	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	168	35434	8069	0.22771914	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998858	TTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	166	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9998755	GTT	synonymous	NA	NA	NA	NA
M8	chr9	79684448	12A2p6	cell line	sgMsh2	79684448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	233	16	10	0.625	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon14:c.A2729G:p.N910S	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9999908	GTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	79700544	12A2p6	cell line	sgMsh2	79700544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	32	9	3	0.333333333	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon9:c.T1001C:p.I334T	9qE1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.9104426	GAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	187	170	42	0.247058824	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999498	TAC	synonymous	NA	NA	NA	NA
M8	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	202	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999738	ATT	nonsynonymous	NA	NA	NA	NA
M8	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2174	46	112	4	0.035714286	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M8	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	138	90	20	0.222222222	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9995822	TAG	synonymous	NA	NA	NA	NA
M8	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	104	45	4	0.088888889	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.995446491	1	0.9979341	TTT	nonsynonymous	T	5	TTTTT	NA
M8	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	81	54	7	0.12962963	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.818371875	1	0.7854275	AAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	141	51	11	0.215686275	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999633	GAA	nonsynonymous	T	5	TTTTT	NA
M8	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.28	163	95	0	0	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M8	chr9	98507881	12A2p6	cell line	sgMsh2	98507881	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	60	36	5	0.138888889	exonic	Rbp2	nonsynonymous SNV	Rbp2:NM_009034:exon3:c.G345T:p.K115N	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	AGC	nonsynonymous	NA	NA	NA	NA
M8	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	137	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.823157675	1	0.7542903	TAC	synonymous	NA	NA	NA	NA
M8	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	131	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.76094227	2	0.7452747	TAT	nonsynonymous	NA	NA	NA	NA
M8	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.288	76	16	0	0	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8	chr9	100497512	12A2p6	cell line	sgMsh2	100497512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	239	149	39	0.261744966	exonic	Nck1	nonsynonymous SNV	"Nck1:NM_001324530:exon2:c.T493C:p.W165R,Nck1:NM_010878:exon3:c.T685C:p.W229R"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999947	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	357	52	10	0.192307692	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	3.32E-08	GAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	87	80	17	0.2125	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	87	88	19	0.215909091	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr9	103067843	12A2p6	cell line	sgMsh2	103067843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	84	179	46	0.25698324	exonic	Slco2a1	nonsynonymous SNV	Slco2a1:NM_033314:exon4:c.A416G:p.Q139R	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.995698	CAG	nonsynonymous	GACC	8	GACCGACC	NA
M8	chr9	103306170	12A2p6	cell line	sgMsh2	103306170	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	134	79	1	0.012658228	exonic	Topbp1	frameshift deletion	Topbp1:NM_176979:exon2:c.67delT:p.F24Lfs*6	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	262	135	30	0.222222222	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.999998	AAC	synonymous	NA	NA	NA	NA
M8	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	234	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999934	ATC	nonsynonymous	NA	NA	NA	NA
M8	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	143	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996634	CAA	nonsynonymous	NA	NA	NA	NA
M8	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	87	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9962196	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	40	92	22	0.239130435	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9718373	GCT	synonymous	NA	NA	NA	NA
M8	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	68	89	19	0.213483146	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.957160088	1	0.9812363	ACT	nonsynonymous	NA	NA	NA	NA
M8	chr9	106896764	12A2p6	cell line	sgMsh2	106896764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.187	82	1	0	0	exonic	Dock3	frameshift deletion	Dock3:NM_153413:exon52:c.5555delC:p.P1852Rfs*44	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.894944682	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8	chr9	107585573	12A2p6	cell line	sgMsh2	107585573	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	142	0	0	NA	exonic	Hyal3	nonsynonymous SNV	Hyal3:NM_178020:exon2:c.T805C:p.F269L	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9996486	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	170	143	37	0.258741259	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.947588487	1	0.9988085	CTT	nonsynonymous	NA	NA	NA	NA
M8	chr9	107977904	12A2p6	cell line	sgMsh2	107977904	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	92	2	0	0	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon9:c.G965A:p.G322E	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.98108909	1	0.9951085	GGG	nonsynonymous	NA	NA	NA	NA
M8	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	201	23	5	0.217391304	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999726	CAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	149	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997403	CTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	83	172	35	0.203488372	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	79	5	0	0	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9946649	CCT	synonymous	NA	NA	NA	NA
M8	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	96	46	9	0.195652174	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9974355	TAC	synonymous	NA	NA	NA	NA
M8	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	116	10	1	0.1	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	GTG	synonymous	NA	NA	NA	NA
M8	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	72	16	4	0.25	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.847086678	1	0.872043	GTC	nonsynonymous	NA	NA	NA	NA
M8	chr9	110109082	12A2p6	cell line	sgMsh2	110109082	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.176	123	75	21	0.28	exonic	Dhx30	frameshift deletion	"Dhx30:NM_133347:exon4:c.137delC:p.P46Hfs*24,Dhx30:NM_001252682:exon5:c.68delC:p.P23Hfs*24"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.842300877	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	174	354	74	0.209039548	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999119	GCT	nonsynonymous	NA	NA	NA	NA
M8	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	122	8	0	0	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9991656	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M8	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	85	136	11	0.080882353	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9958794	ATA	synonymous	NA	NA	NA	NA
M8	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	55	44	11	0.25	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9850797	GGA	nonsynonymous	G	5	GGGGG	NA
M8	chr9	111390241	12A2p6	cell line	sgMsh2	111390241	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	136	0	0	NA	exonic	Trank1	frameshift deletion	Trank1:NM_001164659:exon20:c.6045delT:p.Q2017Rfs*18	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8	chr9	114381671	12A2p6	cell line	sgMsh2	114381671	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	115	127	38	0.299212598	exonic	Crtap	synonymous SNV	Crtap:NM_019922:exon4:c.G834A:p.E278E	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9988709	TCT	synonymous	NA	NA	NA	NA
M8	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	48	12	2	0.166666667	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9799097	TAC	nonsynonymous	NA	NA	NA	NA
M8	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	116	179	54	0.301675978	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9989187	ATC	nonsynonymous	A	5	AAAAA	NA
M8	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	223	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999894	GAG	nonsynonymous	NA	NA	NA	NA
M8	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	79	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.808800274	1	0.7509701	GTG	nonsynonymous	NA	NA	NA	NA
M8	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	130	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.938016886	1	0.9946956	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M8	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	60	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9879465	CCC	synonymous	NA	NA	NA	NA
M8	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	150	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9997513	GAT	synonymous	NA	NA	NA	NA
M8	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	128	93	21	0.225806452	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	0.899730482	1	0.979023	CAC	synonymous	NA	NA	NA	NA
M8	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	198	88	17	0.193181818	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-4330518-124127055	4	2	2	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	1	1	1	0.9999688	ATA	nonsynonymous	NA	NA	NA	NA
M8	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.591	22	5	2	0.4	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M8	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.632	41	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M8	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	58	13	3	0.230769231	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M8	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.45	63	27	13	0.481481481	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M8	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	164	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M8	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	145	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8	chrX	37147845	12A2p6	cell line	sgMsh2	37147845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.465	98	51	18	0.352941176	exonic	Nkap	synonymous SNV	Nkap:NM_025937:exon9:c.T1128C:p.A376A	XqA3.3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M8	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	195	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M8	chrX	44366612	12A2p6	cell line	sgMsh2	44366612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	43	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.C1399T:p.L467F	XqA4	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M8	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	55	13	4	0.307692308	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M8	chrX	56455218	12A2p6	cell line	sgMsh2	56455218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	59	0	0	NA	exonic	Ints6l	synonymous SNV	Ints6l:NM_172779:exon1:c.C13T:p.L5L	XqA6	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M8	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	70	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8	chrX	60123245	12A2p6	cell line	sgMsh2	60123245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	70	0	0	NA	exonic	Mcf2	synonymous SNV	"Mcf2:NM_001359001:exon7:c.G825A:p.Q275Q,Mcf2:NM_001358998:exon8:c.G945A:p.Q315Q,Mcf2:NM_001358999:exon8:c.G945A:p.Q315Q,Mcf2:NM_001359000:exon8:c.G942A:p.Q314Q,Mcf2:NM_001289730:exon9:c.G1062A:p.Q354Q,Mcf2:NM_133197:exon9:c.G1062A:p.Q354Q,Mcf2:NM_001289731:exon12:c.G1611A:p.Q537Q"	XqA6	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCT	synonymous	NA	NA	NA	NA
M8	chrX	61185085	12A2p6	cell line	sgMsh2	61185085	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.449	275	0	0	NA	exonic	Cdr1	nonsynonymous SNV	Cdr1:NM_001166658:exon1:c.T474G:p.D158E	XqA6	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M8	chrX	64151661	12A2p6	cell line	sgMsh2	64151661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.517	58	0	0	NA	exonic	Gm6760	nonsynonymous SNV	Gm6760:NM_001177377:exon2:c.G179T:p.R60M	XqA7.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.452	100	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M8	chrX	73759497	12A2p6	cell line	sgMsh2	73759497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.545	70	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon2:c.T970C:p.Y324H	XqA7.3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.552	116	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	67	80	40	0.5	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M8	chrX	79517244	12A2p6	cell line	sgMsh2	79517244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.608	46	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon1:c.T42C:p.D14D	XqB	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M8	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	94	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M8	chrX	87300643	12A2p6	cell line	sgMsh2	87300643	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.476	70	0	0	NA	exonic	Il1rapl1	synonymous SNV	Il1rapl1:NM_001160403:exon5:c.C645A:p.T215T	XqC1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M8	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	102	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M8	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	104	5	0	0	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M8	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	70	1382	675	0.488422576	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	21	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8	chrX	101258606	12A2p6	cell line	sgMsh2	101258606	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.643	42	25	7	0.28	exonic	Foxo4	frameshift deletion	Foxo4:NM_018789:exon2:c.883delG:p.V297Sfs*8	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M8	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	51	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M8	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.432	98	86	0	0	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	92	19	7	0.368421053	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M8	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.442	121	15	1	0.066666667	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M8	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	64	92	44	0.47826087	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M8	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	97	17	5	0.294117647	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M8	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	59	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M8	chrX	122395705	12A2p6	cell line	sgMsh2	122395705	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	115	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.G1315T:p.G439C	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.574	49	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M8	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.528	42	2	2	1	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M8	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	61	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	60	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8	chrX	141675887	12A2p6	cell line	sgMsh2	141675887	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	30	47	0	0	exonic	Col4a5	stopgain	"Col4a5:NM_001163155:exon47:c.T4479A:p.Y1493X,Col4a5:NM_007736:exon48:c.T4479A:p.Y1493X"	XqF2	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	ATG	nonsynonymous	TGTA	8	TGTATGTA	NA
M8	chrX	143733165	12A2p6	cell line	sgMsh2	143733165	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.568	45	0	0	NA	exonic	Pak3	nonsynonymous SNV	"Pak3:NM_001195047:exon6:c.C625T:p.P209S,Pak3:NM_008778:exon6:c.C562T:p.P188S,Pak3:NM_001195046:exon7:c.C670T:p.P224S,Pak3:NM_001195048:exon7:c.C607T:p.P203S,Pak3:NM_001195049:exon9:c.C562T:p.P188S"	XqF2	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TCC	nonsynonymous	NA	NA	NA	NA
M8	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	64	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M8	chrX	150585290	12A2p6	cell line	sgMsh2	150585290	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	15	18	8	0.444444444	exonic	Apex2	synonymous SNV	Apex2:NM_029943:exon4:c.G477A:p.A159A	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCG	synonymous	NA	NA	NA	NA
M8	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.495	98	8	3	0.375	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8	chrX	154924586	12A2p6	cell line	sgMsh2	154924586	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	400	0	0	NA	exonic	Magea6	nonsynonymous SNV	Magea6:NM_020019:exon2:c.C473A:p.P158H	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M8	chrX	154948718	12A2p6	cell line	sgMsh2	154948718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	259	0	0	NA	exonic	Magea3	nonsynonymous SNV	Magea3:NM_020017:exon1:c.G788T:p.R263M	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	187	140	53	0.378571429	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.545	54	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	91	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.307220395	"Manually edited (multiplied x2) to correct the ploidy = 2 to ploidy = 4 (WGD, metaphase validated)"	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	4785582	12A2p6	cell line	sgMsh2	4785582	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	31	0	0	NA	exonic	Mrpl15	synonymous SNV	"Mrpl15:NM_001177658:exon1:c.C96A:p.S32S,Mrpl15:NM_025300:exon1:c.C96A:p.S32S"	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.943494	TGG	synonymous	NA	NA	NA	NA
M8_p20	chr1	6234357	12A2p6	cell line	sgMsh2	6234357	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	157	0	0	NA	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon5:c.T327C:p.P109P	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997063	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr1	6248953	12A2p6	cell line	sgMsh2	6248953	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	26	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon15:c.A2595C:p.E865D	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9309981	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	6260935	12A2p6	cell line	sgMsh2	6260935	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	26	0	0	NA	exonic	Rb1cc1	nonsynonymous SNV	Rb1cc1:NM_009826:exon16:c.C3815T:p.A1272V	1qA1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9309981	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	9687675	12A2p6	cell line	sgMsh2	9687675	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	228	0	0	NA	exonic	Mybl1	nonsynonymous SNV	"Mybl1:NM_001290397:exon5:c.T398G:p.L133R,Mybl1:NM_008651:exon5:c.T398G:p.L133R"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.890458149	1	0.9895617	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	10209499	12A2p6	cell line	sgMsh2	10209499	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	212	0	0	NA	exonic	Arfgef1	nonsynonymous SNV	Arfgef1:NM_001102430:exon6:c.A842C:p.E281A	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999711	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	10477102	12A2p6	cell line	sgMsh2	10477102	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	117	0	0	NA	exonic	Cpa6	nonsynonymous SNV	"Cpa6:NM_001289497:exon5:c.A34G:p.R12G,Cpa6:NM_177834:exon6:c.A562G:p.R188G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.009928322	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	11204159	12A2p6	cell line	sgMsh2	11204159	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	206	0	0	NA	exonic	Prex2	nonsynonymous SNV	Prex2:NM_029525:exon33:c.C4054A:p.L1352M	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999628	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	11974924	12A2p6	cell line	sgMsh2	11974924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	278	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1290C:p.G430G,A830018L16Rik:NM_001374633:exon13:c.T1299C:p.G433G,A830018L16Rik:NM_001374634:exon13:c.T1080C:p.G360G,A830018L16Rik:NM_001160369:exon14:c.T1347C:p.G449G,A830018L16Rik:NM_177173:exon14:c.T1338C:p.G446G"	1qA2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.818136675	2	0.5186346	GTC	synonymous	GTCT	10	GTCTGTCTGT	NA
M8_p20	chr1	13174927	12A2p6	cell line	sgMsh2	13174927	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	92	0	0	NA	exonic	Ncoa2	nonsynonymous SNV	"Ncoa2:NM_001302702:exon11:c.C1546T:p.P516S,Ncoa2:NM_008678:exon11:c.C1546T:p.P516S"	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	20058356	12A2p6	cell line	sgMsh2	20058356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	88	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon67:c.C12122T:p.T4041I	1qA3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9946315	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	20381417	12A2p6	cell line	sgMsh2	20381417	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	62	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon40:c.T6653C:p.V2218A	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9840939	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	21457504	12A2p6	cell line	sgMsh2	21457504	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	84	0	0	NA	exonic	Kcnq5	synonymous SNV	"Kcnq5:NM_001310477:exon9:c.C1344T:p.G448G,Kcnq5:NM_023872:exon10:c.C1371T:p.G457G,Kcnq5:NM_001160139:exon11:c.C1428T:p.G476G"	1qA4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.993651	TGC	synonymous	NA	NA	NA	NA
M8_p20	chr1	24028908	12A2p6	cell line	sgMsh2	24028908	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	132	0	0	NA	exonic	Fam135a	nonsynonymous SNV	Fam135a:NM_026604:exon14:c.A2879G:p.N960S	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9932998	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	25131380	12A2p6	cell line	sgMsh2	25131380	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	71	0	0	NA	exonic	Adgrb3	nonsynonymous SNV	Adgrb3:NM_175642:exon20:c.G2836A:p.A946T	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9890639	GCG	nonsynonymous	GGT	9	GGTGGTGGT	NA
M8_p20	chr1	26683144	12A2p6	cell line	sgMsh2	26683144	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	102	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.A2954G:p.H985R	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9970186	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	26683612	12A2p6	cell line	sgMsh2	26683612	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	89	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon2:c.C2486A:p.P829H	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9948521	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	28778387	12A2p6	cell line	sgMsh2	28778387	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	155	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.A563C:p.Q188P	1qA5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.311886357	3	0.9999923	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	32472575	12A2p6	cell line	sgMsh2	32472575	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	42	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.G620T:p.G207V	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9637689	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	32472689	12A2p6	cell line	sgMsh2	32472689	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	52	0	0	NA	exonic	Khdrbs2	nonsynonymous SNV	Khdrbs2:NM_133235:exon6:c.C734A:p.P245H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9759459	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	33836603	12A2p6	cell line	sgMsh2	33836603	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	139	0	0	NA	exonic	Gm15455	nonsynonymous SNV	Gm15455:NM_001161816:exon1:c.A2078G:p.K693R	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9944253	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	34135229	12A2p6	cell line	sgMsh2	34135229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	109	0	0	NA	exonic	Dst	nonsynonymous SNV	"Dst:NM_133833:exon6:c.T554C:p.L185P,Dst:NM_134448:exon6:c.T554C:p.L185P,Dst:NM_001276764:exon9:c.T1088C:p.L363P"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.70061428	2	0.9216343	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	36197621	12A2p6	cell line	sgMsh2	36197621	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	277	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon12:c.T1149C:p.T383T	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999981	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	36812267	12A2p6	cell line	sgMsh2	36812267	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	190	0	0	NA	exonic	Tmem131	nonsynonymous SNV	Tmem131:NM_018872:exon27:c.A2901C:p.Q967H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.958259531	1	0.999411	CTT	nonsynonymous	CCTTGA	12	CCTTGACCTTGA	NA
M8_p20	chr1	37398835	12A2p6	cell line	sgMsh2	37398835	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	61	0	0	NA	exonic	Inpp4a	nonsynonymous SNV	"Inpp4a:NM_001290798:exon14:c.G1774A:p.V592M,Inpp4a:NM_001290799:exon14:c.G1771A:p.V591M,Inpp4a:NM_172971:exon15:c.G1807A:p.V603M,Inpp4a:NM_001374629:exon24:c.G2701A:p.V901M,Inpp4a:NM_001374630:exon24:c.G2584A:p.V862M,Inpp4a:NM_001290797:exon25:c.G2716A:p.V906M,Inpp4a:NM_030266:exon25:c.G2602A:p.V868M"	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9834199	GGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	37624490	12A2p6	cell line	sgMsh2	37624490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	49	0	0	NA	exonic	Cracdl	nonsynonymous SNV	Cracdl:NM_028096:exon7:c.C2326T:p.R776W	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9727877	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	37907566	12A2p6	cell line	sgMsh2	37907566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	112	0	0	NA	exonic	Lyg2	synonymous SNV	Lyg2:NM_001033427:exon6:c.T633C:p.H211H	1qB	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr1	45334261	12A2p6	cell line	sgMsh2	45334261	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	186	0	0	NA	exonic	Col3a1	synonymous SNV	Col3a1:NM_009930:exon24:c.T1707G:p.G569G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	7.53E-09	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr1	45347827	12A2p6	cell line	sgMsh2	45347827	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	175	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon50:c.G4197T:p.K1399N	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998625	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	45819582	12A2p6	cell line	sgMsh2	45819582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	265	0	0	NA	exonic	Wdr75	nonsynonymous SNV	Wdr75:NM_028599:exon17:c.A1910G:p.D637G	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9999938	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	52464785	12A2p6	cell line	sgMsh2	52464785	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	20	0	0	NA	exonic	Nab1	stopgain	Nab1:NM_008667:exon6:c.G1255T:p.G419X	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9123907	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	52663439	12A2p6	cell line	sgMsh2	52663439	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	76	0	0	NA	exonic	Mfsd6	synonymous SNV	"Mfsd6:NM_001357464:exon4:c.A1647G:p.T549T,Mfsd6:NM_133829:exon4:c.A1647G:p.T549T,Mfsd6:NM_178081:exon4:c.A1647G:p.T549T"	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9625741	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr1	53064068	12A2p6	cell line	sgMsh2	53064068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	187	0	0	NA	exonic	Mstn	nonsynonymous SNV	Mstn:NM_010834:exon2:c.A562G:p.T188A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999171	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	53397135	12A2p6	cell line	sgMsh2	53397135	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	275	0	0	NA	exonic	Dnah7a	nonsynonymous SNV	Dnah7a:NM_001252070:exon66:c.T12047C:p.V4016A	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.999998	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	53832628	12A2p6	cell line	sgMsh2	53832628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	293	0	0	NA	exonic	Hecw2	frameshift deletion	Hecw2:NM_001001883:exon24:c.4158delT:p.F1386Lfs*8	1qC1.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr1	54536060	12A2p6	cell line	sgMsh2	54536060	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	125	0	0	NA	exonic	Pgap1	nonsynonymous SNV	Pgap1:NM_001163314:exon5:c.T702A:p.N234K	1qC1.2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.998868	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	58017170	12A2p6	cell line	sgMsh2	58017170	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	106	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	"Sgo2a:NM_001177867:exon4:c.A2212G:p.I738V,Sgo2a:NM_199007:exon7:c.A2512G:p.I838V"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9974804	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	58150344	12A2p6	cell line	sgMsh2	58150344	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	137	0	0	NA	exonic	Aox3	synonymous SNV	Aox3:NM_023617:exon13:c.A1203T:p.P401P	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.628292806	2	0.9845466	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	58167686	12A2p6	cell line	sgMsh2	58167686	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	66	0	0	NA	exonic	Aox3	nonsynonymous SNV	Aox3:NM_023617:exon22:c.A2418C:p.K806N	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9865305	AAG	nonsynonymous	AAGC	12	AAGCAAGCAAGC	NA
M8_p20	chr1	58535526	12A2p6	cell line	sgMsh2	58535526	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	136	0	0	NA	exonic	Fam126b	synonymous SNV	"Fam126b:NM_001310598:exon11:c.A855T:p.S285S,Fam126b:NM_001310599:exon11:c.A855T:p.S285S,Fam126b:NM_172513:exon11:c.A855T:p.S285S"	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9902343	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr1	58595689	12A2p6	cell line	sgMsh2	58595689	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	115	0	0	NA	exonic	Ndufb3	nonsynonymous SNV	Ndufb3:NM_025597:exon3:c.A199T:p.I67F	1qC1.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9693693	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	60328118	12A2p6	cell line	sgMsh2	60328118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	109	0	0	NA	exonic	Nbeal1	nonsynonymous SNV	Nbeal1:NM_173444:exon53:c.T7739C:p.L2580P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	0.6610123	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	60447313	12A2p6	cell line	sgMsh2	60447313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	181	0	0	NA	exonic	Abi2	nonsynonymous SNV	"Abi2:NM_198127:exon5:c.A614G:p.N205S,Abi2:NM_001198570:exon6:c.A632G:p.N211S,Abi2:NM_001198571:exon6:c.A632G:p.N211S"	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9998932	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	62198668	12A2p6	cell line	sgMsh2	62198668	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	112	0	0	NA	exonic	Pard3b	nonsynonymous SNV	Pard3b:NM_001081050:exon11:c.T1526C:p.L509P	1qC2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.809096491	1	8.71E-06	CTG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr1	72192143	12A2p6	cell line	sgMsh2	72192143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	228	0	0	NA	exonic	Mreg	nonsynonymous SNV	"Mreg:NM_001005423:exon2:c.T155C:p.L52S,Mreg:NM_001357488:exon3:c.T77C:p.L26S"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999853	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	74380617	12A2p6	cell line	sgMsh2	74380617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	161	0	0	NA	exonic	Slc11a1	nonsynonymous SNV	Slc11a1:NM_013612:exon7:c.A571G:p.K191E	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997518	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	74562726	12A2p6	cell line	sgMsh2	74562726	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	239	0	0	NA	exonic	Plcd4	nonsynonymous SNV	"Plcd4:NM_001081456:exon12:c.T1658C:p.V553A,Plcd4:NM_148937:exon13:c.T1754C:p.V585A"	1qC3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999908	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	74695739	12A2p6	cell line	sgMsh2	74695739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	114	0	0	NA	exonic	Ttll4	nonsynonymous SNV	Ttll4:NM_001014974:exon16:c.A2899G:p.M967V	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9982008	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	74735719	12A2p6	cell line	sgMsh2	74735719	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	230	0	0	NA	exonic	Cyp27a1	nonsynonymous SNV	Cyp27a1:NM_024264:exon4:c.A818G:p.Y273C	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999865	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	74741169	12A2p6	cell line	sgMsh2	74741169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	100	0	0	NA	exonic	Prkag3	nonsynonymous SNV	Prkag3:NM_153744:exon12:c.A1336G:p.R446G	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	75217222	12A2p6	cell line	sgMsh2	75217222	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	88	0	0	NA	exonic	Tuba4a	synonymous SNV	Tuba4a:NM_009447:exon2:c.T216C:p.P72P	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9946315	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	75241415	12A2p6	cell line	sgMsh2	75241415	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	208	0	0	NA	exonic	Dnajb2	nonsynonymous SNV	"Dnajb2:NM_001159885:exon7:c.G555A:p.M185I,Dnajb2:NM_020266:exon7:c.G501A:p.M167I,Dnajb2:NM_001159883:exon8:c.G555A:p.M185I,Dnajb2:NM_001159884:exon8:c.G555A:p.M185I,Dnajb2:NM_178055:exon8:c.G555A:p.M185I"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999658	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	75406986	12A2p6	cell line	sgMsh2	75406986	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	76	0	0	NA	exonic	Speg	nonsynonymous SNV	"Speg:NM_001085370:exon11:c.T1412C:p.L471P,Speg:NM_007463:exon13:c.T3617C:p.L1206P"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.9317634	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	75547258	12A2p6	cell line	sgMsh2	75547258	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.282	59	0	0	NA	exonic	Slc4a3	frameshift insertion	"Slc4a3:NM_001357149:exon3:c.77_78insA:p.L27Sfs*9,Slc4a3:NM_001357150:exon3:c.77_78insA:p.L27Sfs*9,Slc4a3:NM_009208:exon3:c.77_78insA:p.L27Sfs*9"	1qC4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CCT	frameshift	C	5	CCCCC	1
M8_p20	chr1	84751979	12A2p6	cell line	sgMsh2	84751979	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	162	0	0	NA	exonic	Trip12	stopgain	Trip12:NM_133975:exon21:c.C3082T:p.R1028X	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.9106514	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	84912361	12A2p6	cell line	sgMsh2	84912361	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	95	0	0	NA	exonic	Slc16a14	nonsynonymous SNV	Slc16a14:NM_027921:exon4:c.G1222T:p.A408S	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.777455846	2	0.5122386	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	85579187	12A2p6	cell line	sgMsh2	85579187	T	-	Deletion	Mutect2;Vardict	2	0.146	62	0	0	NA	exonic	Sp110	frameshift deletion	"Sp110:NM_030194:exon11:c.1154delA:p.K385Sfs*12,Sp110:NM_175397:exon12:c.1154delA:p.K385Sfs*12"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.65993345	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr1	85642993	12A2p6	cell line	sgMsh2	85642993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	94	0	0	NA	exonic	Sp140	nonsynonymous SNV	Sp140:NM_001013817:exon15:c.A1343G:p.K448R	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.09934438	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	85659832	12A2p6	cell line	sgMsh2	85659832	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	179	0	0	NA	exonic	Sp100	synonymous SNV	"Sp100:NM_001313712:exon2:c.C156T:p.D52D,Sp100:NM_001313713:exon2:c.C156T:p.D52D,Sp100:NM_001313714:exon2:c.C156T:p.D52D,Sp100:NM_001372231:exon2:c.C156T:p.D52D,Sp100:NM_001372232:exon2:c.C156T:p.D52D,Sp100:NM_013673:exon2:c.C156T:p.D52D"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998839	ACC	synonymous	NA	NA	NA	NA
M8_p20	chr1	87149570	12A2p6	cell line	sgMsh2	87149570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	161	0	0	NA	exonic	Ecel1	nonsynonymous SNV	"Ecel1:NM_001277925:exon14:c.T1915C:p.S639P,Ecel1:NM_021306:exon14:c.T1915C:p.S639P"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997518	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	87407427	12A2p6	cell line	sgMsh2	87407427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	83	0	0	NA	exonic	Gigyf2	synonymous SNV	"Gigyf2:NM_001110212:exon11:c.G1050A:p.E350E,Gigyf2:NM_146112:exon11:c.G1068A:p.E356E"	1qC5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9933792	AGG	synonymous	G	5	GGGGG	NA
M8_p20	chr1	88233353	12A2p6	cell line	sgMsh2	88233353	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	438	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon7:c.T692G:p.L231R	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.36160737	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	88241627	12A2p6	cell line	sgMsh2	88241627	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	368	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon19:c.T2014C:p.F672L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.280245712	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	88249724	12A2p6	cell line	sgMsh2	88249724	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	318	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon28:c.T2968C:p.F990L	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.171763501	3	1	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	92982914	12A2p6	cell line	sgMsh2	92982914	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	90	0	0	NA	exonic	Gpr35	nonsynonymous SNV	"Gpr35:NM_001104529:exon2:c.T347C:p.V116A,Gpr35:NM_001271766:exon2:c.T347C:p.V116A,Gpr35:NM_022320:exon2:c.T347C:p.V116A"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.9777208	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	93346286	12A2p6	cell line	sgMsh2	93346286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	215	0	0	NA	exonic	Ppp1r7	synonymous SNV	Ppp1r7:NM_023200:exon2:c.A183G:p.E61E	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999746	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	93394445	12A2p6	cell line	sgMsh2	93394445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	106	0	0	NA	exonic	Ano7	nonsynonymous SNV	"Ano7:NM_001271884:exon12:c.T1174C:p.Y392H,Ano7:NM_207031:exon12:c.T1174C:p.Y392H"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9957091	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	93569931	12A2p6	cell line	sgMsh2	93569931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	149	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon8:c.A682G:p.M228V	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9995884	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	93705590	12A2p6	cell line	sgMsh2	93705590	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.181	137	0	0	NA	exonic	Thap4	synonymous SNV	"Thap4:NM_001310761:exon5:c.T444C:p.T148T,Thap4:NM_025920:exon6:c.T1656C:p.T552T"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	7.29E-07	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	97119948	12A2p6	cell line	sgMsh2	97119948	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.216	63	0	0	NA	exonic	Slco6c1	frameshift deletion	Slco6c1:NM_028942:exon3:c.629delA:p.N210Tfs*20	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.976339899	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8_p20	chr1	97785194	12A2p6	cell line	sgMsh2	97785194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	193	0	0	NA	exonic	Gin1	nonsynonymous SNV	"Gin1:NM_001310773:exon6:c.T704G:p.V235G,Gin1:NM_026250:exon6:c.T971G:p.V324G"	1qD	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999357	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	105746069	12A2p6	cell line	sgMsh2	105746069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	123	0	0	NA	exonic	Relch	nonsynonymous SNV	"Relch:NM_029349:exon25:c.T3182C:p.F1061S,Relch:NM_173187:exon26:c.T3254C:p.F1085S"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9987684	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	110084953	12A2p6	cell line	sgMsh2	110084953	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	119	0	0	NA	exonic	Cdh7	nonsynonymous SNV	"Cdh7:NM_001316743:exon7:c.C1015A:p.L339M,Cdh7:NM_172853:exon7:c.C1015A:p.L339M,Cdh7:NM_001316744:exon8:c.C841A:p.L281M"	1qE2.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9964829	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	116117615	12A2p6	cell line	sgMsh2	116117615	-	T	Insertion	Mutect2;Vardict	2	0.179	217	0	0	NA	exonic	Cntnap5a	frameshift insertion	"Cntnap5a:NM_001077425:exon7:c.961dupT:p.L322Ffs*9,Cntnap5a:NM_001371013:exon7:c.961dupT:p.L322Ffs*9"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.809096491	NA	NA	CAT	frameshift	T	5	TTTTT	1
M8_p20	chr1	118652963	12A2p6	cell line	sgMsh2	118652963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	116	0	0	NA	exonic	Tfcp2l1	nonsynonymous SNV	Tfcp2l1:NM_023755:exon4:c.T386C:p.I129T	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9983461	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	118837811	12A2p6	cell line	sgMsh2	118837811	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	56	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2609G:p.N870S	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9796055	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	119721956	12A2p6	cell line	sgMsh2	119721956	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	249	0	0	NA	exonic	Ptpn4	synonymous SNV	Ptpn4:NM_019933:exon12:c.A909G:p.E303E	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999939	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr1	121482637	12A2p6	cell line	sgMsh2	121482637	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	163	0	0	NA	exonic	Ccdc93	nonsynonymous SNV	"Ccdc93:NM_001025156:exon16:c.C1261A:p.L421M,Ccdc93:NM_029955:exon16:c.C1258A:p.L420M"	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997719	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	123384300	12A2p6	cell line	sgMsh2	123384300	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	151	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon15:c.G1358T:p.G453V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9996217	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	123854202	12A2p6	cell line	sgMsh2	123854202	A	C	SNV	Mutect2;Strelka2	2	0.21	174	0	0	NA	exonic	Dpp10	nonsynonymous SNV	Dpp10:NM_199021:exon3:c.T247G:p.F83V	1qE2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9985333	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	127412243	12A2p6	cell line	sgMsh2	127412243	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	111	0	0	NA	exonic	Mgat5	nonsynonymous SNV	Mgat5:NM_145128:exon12:c.G1360T:p.V454L	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.911347	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	127838530	12A2p6	cell line	sgMsh2	127838530	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	99	0	0	NA	exonic	Map3k19	nonsynonymous SNV	Map3k19:NM_011737:exon6:c.T656C:p.L219P	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9966178	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	128301164	12A2p6	cell line	sgMsh2	128301164	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	144	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon8:c.A2591G:p.D864G	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994918	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	128364313	12A2p6	cell line	sgMsh2	128364313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	123	0	0	NA	exonic	Dars	nonsynonymous SNV	Dars:NM_177445:exon16:c.T1427C:p.V476A	1qE3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.890458149	1	0.9589404	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	129921319	12A2p6	cell line	sgMsh2	129921319	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	300	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon14:c.T2767A:p.C923S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999993	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	130189990	12A2p6	cell line	sgMsh2	130189990	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	258	0	0	NA	exonic	Thsd7b	nonsynonymous SNV	Thsd7b:NM_172485:exon23:c.A4243T:p.S1415C	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999959	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	131436810	12A2p6	cell line	sgMsh2	131436810	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	138	0	0	NA	exonic	Srgap2	nonsynonymous SNV	Srgap2:NM_001081011:exon3:c.G125A:p.R42Q	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993455	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	131977819	12A2p6	cell line	sgMsh2	131977819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	69	0	0	NA	exonic	Slc45a3	synonymous SNV	"Slc45a3:NM_001177628:exon3:c.T579C:p.G193G,Slc45a3:NM_145977:exon3:c.T579C:p.G193G"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.732254925	2	0.6075183	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr1	132014588	12A2p6	cell line	sgMsh2	132014588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	69	0	0	NA	exonic	Elk4	nonsynonymous SNV	"Elk4:NM_001376954:exon2:c.A197G:p.Y66C,Elk4:NM_001376955:exon2:c.A197G:p.Y66C,Elk4:NM_001376956:exon2:c.A197G:p.Y66C,Elk4:NM_001376959:exon2:c.A197G:p.Y66C,Elk4:NM_007923:exon2:c.A197G:p.Y66C,Elk4:NM_001376957:exon3:c.A197G:p.Y66C,Elk4:NM_001376958:exon3:c.A197G:p.Y66C"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	TAC	nonsynonymous	TAC	9	TACTACTAC	NA
M8_p20	chr1	132458394	12A2p6	cell line	sgMsh2	132458394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	89	0	0	NA	exonic	Dstyk	synonymous SNV	Dstyk:NM_172516:exon10:c.G2310A:p.G770G	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9948521	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr1	132492609	12A2p6	cell line	sgMsh2	132492609	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	154	0	0	NA	exonic	Rbbp5	synonymous SNV	"Rbbp5:NM_001357486:exon6:c.T579C:p.T193T,Rbbp5:NM_172517:exon6:c.T579C:p.T193T,Rbbp5:NM_001357487:exon7:c.T198C:p.T66T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996666	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr1	133273998	12A2p6	cell line	sgMsh2	133273998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	83	0	0	NA	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon9:c.T1208C:p.I403T,Plekha6:NM_182930:exon9:c.T1148C:p.I383T"	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.899498333	1	0.9434614	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	133393216	12A2p6	cell line	sgMsh2	133393216	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	27	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon2:c.A55C:p.M19L	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9336948	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	135460367	12A2p6	cell line	sgMsh2	135460367	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.262	175	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3488G:p.N1163S	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998625	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	135460369	12A2p6	cell line	sgMsh2	135460369	T	A	SNV	Mutect2;Strelka2;MuSe	3	0.262	175	0	0	NA	exonic	Nav1	nonsynonymous SNV	Nav1:NM_173437:exon15:c.A3486T:p.L1162F	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998625	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	136214410	12A2p6	cell line	sgMsh2	136214410	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.335	174	0	0	NA	exonic	Inava	frameshift deletion	Inava:NM_028872:exon10:c.1950delC:p.V651Cfs*52	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8_p20	chr1	139447488	12A2p6	cell line	sgMsh2	139447488	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	203	0	0	NA	exonic	Zbtb41	synonymous SNV	Zbtb41:NM_172643:exon11:c.A2685T:p.T895T	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999578	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr1	139480477	12A2p6	cell line	sgMsh2	139480477	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	172	0	0	NA	exonic	Aspm	synonymous SNV	Aspm:NM_009791:exon18:c.T7101C:p.H2367H	1qE4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.999844	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr1	139739632	12A2p6	cell line	sgMsh2	139739632	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	213	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon7:c.A990G:p.V330V,Gm4788:NM_001160303:exon7:c.A987G:p.V329V,Gm4788:NM_001160304:exon7:c.A990G:p.V330V"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.772935754	2	9.76E-08	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr1	139740416	12A2p6	cell line	sgMsh2	139740416	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	150	0	0	NA	exonic	Gm4788	frameshift deletion	"Gm4788:NM_001029977:exon6:c.978delA:p.A327Qfs*3,Gm4788:NM_001160303:exon6:c.978delA:p.G327Vfs*2,Gm4788:NM_001160304:exon6:c.978delA:p.A327Qfs*3"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr1	139781136	12A2p6	cell line	sgMsh2	139781136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	419	0	0	NA	exonic	Gm4788	synonymous SNV	"Gm4788:NM_001029977:exon1:c.T33C:p.N11N,Gm4788:NM_001160303:exon1:c.T33C:p.N11N,Gm4788:NM_001160304:exon1:c.T33C:p.N11N"	1qF	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	5.66E-09	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr1	140100922	12A2p6	cell line	sgMsh2	140100922	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.223	173	0	0	NA	exonic	Cfh	frameshift insertion	Cfh:NM_009888:exon19:c.3087dupA:p.S1030Ifs*2	1qF	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAT	frameshift	T	5	TTTTT	1
M8_p20	chr1	144753989	12A2p6	cell line	sgMsh2	144753989	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	247	0	0	NA	exonic	Rgs18	synonymous SNV	Rgs18:NM_022881:exon5:c.A531G:p.Q177Q	1qF	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9998664	TTT	synonymous	NA	NA	NA	NA
M8_p20	chr1	150431235	12A2p6	cell line	sgMsh2	150431235	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	58	0	0	NA	exonic	Tpr	nonsynonymous SNV	Tpr:NM_133780:exon34:c.G4802A:p.R1601H	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9812248	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	150808584	12A2p6	cell line	sgMsh2	150808584	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	96	0	0	NA	exonic	Hmcn1	nonsynonymous SNV	Hmcn1:NM_001024720:exon8:c.G1234T:p.G412C	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9961633	CCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	151351713	12A2p6	cell line	sgMsh2	151351713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	183	0	0	NA	exonic	Ivns1abp	nonsynonymous SNV	"Ivns1abp:NM_001359262:exon3:c.T145C:p.Y49H,Ivns1abp:NM_001039511:exon4:c.T271C:p.Y91H,Ivns1abp:NM_001039512:exon4:c.T271C:p.Y91H,Ivns1abp:NM_054102:exon4:c.T271C:p.Y91H"	1qG1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.791016122	2	0.6984462	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	152855898	12A2p6	cell line	sgMsh2	152855898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	224	0	0	NA	exonic	Smg7	nonsynonymous SNV	"Smg7:NM_001005507:exon10:c.A1111G:p.R371G,Smg7:NM_001160256:exon10:c.A1111G:p.R371G,Smg7:NM_001160257:exon11:c.A1135G:p.R379G,Smg7:NM_001359257:exon11:c.A106G:p.R36G"	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999826	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	153230768	12A2p6	cell line	sgMsh2	153230768	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	32	0	0	NA	exonic	Lamc1	nonsynonymous SNV	Lamc1:NM_010683:exon22:c.A3797G:p.Y1266C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.822656767	1	0.7946594	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	154398794	12A2p6	cell line	sgMsh2	154398794	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	48	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon47:c.G6421T:p.G2141C	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9716478	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	154407772	12A2p6	cell line	sgMsh2	154407772	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	381	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon44:c.A5847G:p.I1949M	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	2.41E-08	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	154633618	12A2p6	cell line	sgMsh2	154633618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	152	0	0	NA	exonic	Cacna1e	nonsynonymous SNV	Cacna1e:NM_009782:exon6:c.T890C:p.L297P	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	AAG	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr1	155293260	12A2p6	cell line	sgMsh2	155293260	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	46	0	0	NA	exonic	Xpr1	nonsynonymous SNV	Xpr1:NM_011273:exon12:c.A1517G:p.D506G	1qG3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.969227	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	160577654	12A2p6	cell line	sgMsh2	160577654	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	288	0	0	NA	exonic	Gpr52	nonsynonymous SNV	"Gpr52:NM_001146330:exon2:c.T100C:p.Y34H,Gpr52:NM_001368668:exon2:c.T100C:p.Y34H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999988	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	163987016	12A2p6	cell line	sgMsh2	163987016	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	297	0	0	NA	exonic	BC055324	nonsynonymous SNV	"BC055324:NM_001357049:exon5:c.G357T:p.Q119H,BC055324:NM_201364:exon5:c.G357T:p.Q119H"	1qH2.1	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9830203	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	164257034	12A2p6	cell line	sgMsh2	164257034	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	201	0	0	NA	exonic	Slc19a2	synonymous SNV	"Slc19a2:NM_001276455:exon2:c.C492A:p.A164A,Slc19a2:NM_054087:exon2:c.C492A:p.A164A"	1qH2.2	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.999796	CCA	synonymous	NA	NA	NA	NA
M8_p20	chr1	165539831	12A2p6	cell line	sgMsh2	165539831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	172	0	0	NA	exonic	Adcy10	nonsynonymous SNV	"Adcy10:NM_001357427:exon15:c.A181G:p.T61A,Adcy10:NM_173029:exon15:c.A1669G:p.T557A"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.999844	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	166382165	12A2p6	cell line	sgMsh2	166382165	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	124	0	0	NA	exonic	Tada1	nonsynonymous SNV	Tada1:NM_030245:exon2:c.T113G:p.I38S	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9983588	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	166663412	12A2p6	cell line	sgMsh2	166663412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	102	0	0	NA	exonic	Fmo9	nonsynonymous SNV	"Fmo9:NM_001347135:exon8:c.T1343C:p.L448S,Fmo9:NM_172844:exon10:c.T1496C:p.L499S"	1qH2.3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9970186	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	170151077	12A2p6	cell line	sgMsh2	170151077	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	200	0	0	NA	exonic	Uap1	synonymous SNV	"Uap1:NM_001305045:exon6:c.A894T:p.V298V,Uap1:NM_001305046:exon6:c.A894T:p.V298V,Uap1:NM_133806:exon6:c.A894T:p.V298V"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999521	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr1	171285592	12A2p6	cell line	sgMsh2	171285592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	168	0	0	NA	exonic	Usp21	nonsynonymous SNV	Usp21:NM_013919:exon3:c.A610G:p.T204A	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998153	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	172317568	12A2p6	cell line	sgMsh2	172317568	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	64	0	0	NA	exonic	Igsf8	nonsynonymous SNV	Igsf8:NM_080419:exon3:c.T650A:p.V217E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9853621	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	172556097	12A2p6	cell line	sgMsh2	172556097	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	62	0	0	NA	exonic	Vsig8	nonsynonymous SNV	Vsig8:NM_177723:exon1:c.T26C:p.L9P	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9840939	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	172598223	12A2p6	cell line	sgMsh2	172598223	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	259	0	0	NA	exonic	Fcrl6	nonsynonymous SNV	Fcrl6:NM_001164725:exon5:c.T710G:p.F237C	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.999996	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	173183978	12A2p6	cell line	sgMsh2	173183978	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	368	0	0	NA	exonic	Olfr1406	nonsynonymous SNV	Olfr1406:NM_146763:exon1:c.G455A:p.G152E	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	4.10E-08	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	173215959	12A2p6	cell line	sgMsh2	173215959	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	344	0	0	NA	exonic	Olfr1404	frameshift deletion	Olfr1404:NM_146881:exon1:c.307delT:p.Y105Ifs*1	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr1	173222609	12A2p6	cell line	sgMsh2	173222609	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	306	0	0	NA	exonic	Fcer1a	synonymous SNV	Fcer1a:NM_010184:exon4:c.C513T:p.T171T	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr1	173270231	12A2p6	cell line	sgMsh2	173270231	A	G	SNV	Mutect2;Strelka2	2	0.076	269	0	0	NA	exonic	Olfr418	nonsynonymous SNV	Olfr418:NM_146651:exon1:c.A55G:p.S19G	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.343527002	3	7.57E-09	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	173637479	12A2p6	cell line	sgMsh2	173637479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	348	0	0	NA	exonic	Ifi209	synonymous SNV	Ifi209:NM_175026:exon2:c.T174C:p.D58D	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9999776	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr1	173971472	12A2p6	cell line	sgMsh2	173971472	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	298	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.A1009G:p.S337G,Ifi202b:NM_011940:exon5:c.A1009G:p.S337G"	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.592132069	2	0.9767461	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	174231386	12A2p6	cell line	sgMsh2	174231386	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.145	117	0	0	NA	exonic	Spta1	synonymous SNV	Spta1:NM_011465:exon42:c.A5886G:p.L1962L	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.655413358	2	0.9782222	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr1	175601509	12A2p6	cell line	sgMsh2	175601509	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	172	0	0	NA	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon10:c.A1439T:p.K480M	1qH3	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.999844	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	176874584	12A2p6	cell line	sgMsh2	176874584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	121	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon11:c.T1254C:p.N418N,Sdccag8:NM_029756:exon11:c.T1254C:p.N418N"	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	1	1	0.9986602	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr1	179755528	12A2p6	cell line	sgMsh2	179755528	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	76	0	0	NA	exonic	Ahctf1	nonsynonymous SNV	Ahctf1:NM_026375:exon32:c.A4484G:p.H1495R	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9891589	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	180599051	12A2p6	cell line	sgMsh2	180599051	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	137	0	0	NA	exonic	Parp1	nonsynonymous SNV	Parp1:NM_007415:exon20:c.A2757G:p.I919M	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9993173	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	180861192	12A2p6	cell line	sgMsh2	180861192	A	-	Deletion	Strelka2;Vardict	2	0.1689	148	0	0	NA	exonic	Sde2	frameshift deletion	Sde2:NM_145943:exon5:c.615delA:p.R208Gfs*52	1qH4	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.76344356	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M8_p20	chr1	182613472	12A2p6	cell line	sgMsh2	182613472	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	45	0	0	NA	exonic	Capn8	synonymous SNV	Capn8:NM_130890:exon12:c.C1470A:p.T490T	1qH5	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	0.9679424	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr1	188753677	12A2p6	cell line	sgMsh2	188753677	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	164	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon44:c.C8983T:p.H2995Y	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9996618	CCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	192434723	12A2p6	cell line	sgMsh2	192434723	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	166	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon10:c.G1835A:p.G612E,Kcnh1:NM_010600:exon10:c.G1916A:p.G639E"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.9966655	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr1	193335467	12A2p6	cell line	sgMsh2	193335467	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	32	0	0	NA	exonic	Lamb3	synonymous SNV	"Lamb3:NM_001277928:exon18:c.G2655A:p.R885R,Lamb3:NM_008484:exon18:c.G2655A:p.R885R"	1qH6	chr1-3216742-195166209	4	2	2	0.9	4.068082914	NA	2	1	1	9.90E-05	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr10	3554068	12A2p6	cell line	sgMsh2	3554068	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	79	0	0	NA	exonic	Iyd	nonsynonymous SNV	Iyd:NM_027391:exon5:c.C714A:p.N238K	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.890277	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	3937940	12A2p6	cell line	sgMsh2	3937940	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	129	0	0	NA	exonic	Plekhg1	nonsynonymous SNV	"Plekhg1:NM_001033253:exon7:c.A868G:p.N290D,Plekhg1:NM_001159942:exon8:c.A868G:p.N290D"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990436	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	4016756	12A2p6	cell line	sgMsh2	4016756	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	87	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon10:c.A1014C:p.R338S,Mthfd1l:NM_001170786:exon10:c.A1014C:p.R338S,Mthfd1l:NM_172308:exon10:c.A1014C:p.R338S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.741295109	2	0.000875205	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	4453875	12A2p6	cell line	sgMsh2	4453875	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	155	0	0	NA	exonic	Armt1	nonsynonymous SNV	Armt1:NM_024261:exon5:c.A959G:p.Y320C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.781975938	2	0.7004269	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	5367576	12A2p6	cell line	sgMsh2	5367576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	179	0	0	NA	exonic	Syne1	nonsynonymous SNV	"Syne1:NM_001347711:exon15:c.T1538C:p.L513P,Syne1:NM_001347732:exon15:c.T1517C:p.L506P,Syne1:NM_153399:exon15:c.T1517C:p.L506P"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998839	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	9812303	12A2p6	cell line	sgMsh2	9812303	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	223	0	0	NA	exonic	Stxbp5	nonsynonymous SNV	Stxbp5:NM_001081344:exon12:c.A1253G:p.Y418C	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9855097	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	11164763	12A2p6	cell line	sgMsh2	11164763	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	196	0	0	NA	exonic	Shprh	nonsynonymous SNV	"Shprh:NM_001077707:exon9:c.T1979A:p.I660N,Shprh:NM_001284354:exon9:c.T1979A:p.I660N,Shprh:NM_172937:exon9:c.T1979A:p.I660N"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999433	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	11290511	12A2p6	cell line	sgMsh2	11290511	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	180	0	0	NA	exonic	Fbxo30	nonsynonymous SNV	"Fbxo30:NM_001168297:exon2:c.A976T:p.T326S,Fbxo30:NM_027968:exon2:c.A976T:p.T326S"	10qA1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998887	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	12941517	12A2p6	cell line	sgMsh2	12941517	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	0	0	NA	exonic	Stx11	synonymous SNV	"Stx11:NM_001163590:exon2:c.C462T:p.R154R,Stx11:NM_001163591:exon2:c.C462T:p.R154R,Stx11:NM_029075:exon3:c.C462T:p.R154R"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997518	CGC	synonymous	NA	NA	NA	NA
M8_p20	chr10	13690565	12A2p6	cell line	sgMsh2	13690565	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	210	0	0	NA	exonic	Aig1	synonymous SNV	"Aig1:NM_001347362:exon4:c.A474G:p.G158G,Aig1:NM_025446:exon4:c.A474G:p.G158G"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999686	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr10	13829244	12A2p6	cell line	sgMsh2	13829244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	147	0	0	NA	exonic	Aig1	nonsynonymous SNV	"Aig1:NM_001347362:exon2:c.T296C:p.V99A,Aig1:NM_025446:exon2:c.T296C:p.V99A"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995522	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	14127903	12A2p6	cell line	sgMsh2	14127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	137	0	0	NA	exonic	Hivep2	nonsynonymous SNV	"Hivep2:NM_010437:exon4:c.A244G:p.K82E,Hivep2:NM_001358782:exon5:c.A244G:p.K82E,Hivep2:NM_001358783:exon8:c.A244G:p.K82E"	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9868208	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	14426999	12A2p6	cell line	sgMsh2	14426999	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	91	0	0	NA	exonic	Adgrg6	nonsynonymous SNV	Adgrg6:NM_001002268:exon19:c.T2585C:p.L862P	10qA2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.7698738	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	17915856	12A2p6	cell line	sgMsh2	17915856	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.202	137	0	0	NA	exonic	Heca	nonsynonymous SNV	Heca:NM_001033432:exon2:c.A451G:p.R151G	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9845231	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	18523948	12A2p6	cell line	sgMsh2	18523948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	149	0	0	NA	exonic	Nhsl1	synonymous SNV	"Nhsl1:NM_173390:exon5:c.A831G:p.P277P,Nhsl1:NM_001163592:exon6:c.A819G:p.P273P"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.881417965	1	0.9586348	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	20023614	12A2p6	cell line	sgMsh2	20023614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	35	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon4:c.A640G:p.T214A	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9518871	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	20257220	12A2p6	cell line	sgMsh2	20257220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	82	0	0	NA	exonic	Map7	nonsynonymous SNV	"Map7:NM_001198635:exon7:c.T674C:p.V225A,Map7:NM_001358787:exon7:c.T740C:p.V247A,Map7:NM_008635:exon7:c.T674C:p.V225A"	10qA3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9930959	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	23897365	12A2p6	cell line	sgMsh2	23897365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	93	0	0	NA	exonic	Vnn1	nonsynonymous SNV	Vnn1:NM_011704:exon2:c.T289C:p.Y97H	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	23984924	12A2p6	cell line	sgMsh2	23984924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	220	0	0	NA	exonic	Taar6	synonymous SNV	Taar6:NM_001010828:exon1:c.C723A:p.S241S	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999794	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr10	24050478	12A2p6	cell line	sgMsh2	24050478	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	559	0	0	NA	exonic	Taar7f	synonymous SNV	Taar7f:NM_001010839:exon1:c.T969G:p.P323P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-09	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr10	24916814	12A2p6	cell line	sgMsh2	24916814	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.271	253	0	0	NA	exonic	Arg1	nonsynonymous SNV	Arg1:NM_007482:exon5:c.T521A:p.I174N	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999949	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	25471610	12A2p6	cell line	sgMsh2	25471610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	128	0	0	NA	exonic	Epb41l2	nonsynonymous SNV	"Epb41l2:NM_001199265:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358751:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358753:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358754:exon7:c.A1100G:p.K367R,Epb41l2:NM_001358755:exon7:c.A1100G:p.K367R,Epb41l2:NM_013511:exon7:c.A1100G:p.K367R"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	25994095	12A2p6	cell line	sgMsh2	25994095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	149	0	0	NA	exonic	Tmem200a	nonsynonymous SNV	"Tmem200a:NM_029881:exon2:c.A275G:p.D92G,Tmem200a:NM_001358814:exon3:c.A275G:p.D92G"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995884	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	26271888	12A2p6	cell line	sgMsh2	26271888	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	95	0	0	NA	exonic	Samd3	nonsynonymous SNV	Samd3:NM_001115154:exon11:c.T1460C:p.L487P	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	26986857	12A2p6	cell line	sgMsh2	26986857	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	100	0	0	NA	exonic	Lama2	nonsynonymous SNV	Lama2:NM_008481:exon62:c.C8909A:p.T2970N	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	30558996	12A2p6	cell line	sgMsh2	30558996	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	93	0	0	NA	exonic	Trmt11	frameshift deletion	"Trmt11:NM_001358806:exon9:c.378delT:p.F126Lfs*3,Trmt11:NM_028604:exon11:c.1053delT:p.F351Lfs*3"	10qA4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr10	40227566	12A2p6	cell line	sgMsh2	40227566	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	137	0	0	NA	exonic	Rpf2	nonsynonymous SNV	"Rpf2:NM_001042556:exon8:c.A490C:p.S164R,Rpf2:NM_023323:exon8:c.A589C:p.S197R"	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9845231	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	41251788	12A2p6	cell line	sgMsh2	41251788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	126	0	0	NA	exonic	Fig4	nonsynonymous SNV	Fig4:NM_133999:exon15:c.T1679C:p.I560T	10qB1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989147	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	41488241	12A2p6	cell line	sgMsh2	41488241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	160	0	0	NA	exonic	Smpd2	nonsynonymous SNV	Smpd2:NM_009213:exon7:c.G560A:p.G187D	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997412	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	41550926	12A2p6	cell line	sgMsh2	41550926	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	70	0	0	NA	exonic	Ccdc162	synonymous SNV	Ccdc162:NM_001358562:exon44:c.A5970G:p.Q1990Q	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9885981	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr10	42197436	12A2p6	cell line	sgMsh2	42197436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	39	0	0	NA	exonic	Foxo3	nonsynonymous SNV	"Foxo3:NM_001376967:exon3:c.A1084G:p.T362A,Foxo3:NM_019740:exon3:c.A1084G:p.T362A"	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9590719	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	43074658	12A2p6	cell line	sgMsh2	43074658	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	94	0	0	NA	exonic	Sobp	nonsynonymous SNV	Sobp:NM_175407:exon5:c.T604C:p.F202L	10qB2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9958269	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	50754122	12A2p6	cell line	sgMsh2	50754122	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	225	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon34:c.G5306T:p.S1769I	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999833	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	51626701	12A2p6	cell line	sgMsh2	51626701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	332	0	0	NA	exonic	Gprc6a	synonymous SNV	Gprc6a:NM_153071:exon3:c.T1065C:p.H355H	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.899498333	1	0.9988065	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr10	52115929	12A2p6	cell line	sgMsh2	52115929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	126	0	0	NA	exonic	Ros1	synonymous SNV	Ros1:NM_011282:exon27:c.T4260C:p.S1420S	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989147	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	53674660	12A2p6	cell line	sgMsh2	53674660	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	90	0	0	NA	exonic	Fam184a	frameshift deletion	Fam184a:NM_001081428:exon9:c.2003delA:p.K668Sfs*9	10qB3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr10	58464235	12A2p6	cell line	sgMsh2	58464235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	197	0	0	NA	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon11:c.T1608C:p.C536C	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9999426	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr10	58478143	12A2p6	cell line	sgMsh2	58478143	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	256	0	0	NA	exonic	Ranbp2	nonsynonymous SNV	Ranbp2:NM_011240:exon20:c.T4684C:p.W1562R	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.8283679	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	58478457	12A2p6	cell line	sgMsh2	58478457	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	84	0	0	NA	exonic	Ranbp2	synonymous SNV	Ranbp2:NM_011240:exon20:c.A4998G:p.E1666E	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9493254	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr10	59223408	12A2p6	cell line	sgMsh2	59223408	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	34	0	0	NA	exonic	Sowahc	synonymous SNV	Sowahc:NM_172939:exon1:c.A1365C:p.P455P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9499093	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	62109976	12A2p6	cell line	sgMsh2	62109976	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	173	0	0	NA	exonic	Fam241b	nonsynonymous SNV	"Fam241b:NM_001358252:exon2:c.A1G:p.M1V,Fam241b:NM_001358253:exon3:c.A1G:p.M1V,Fam241b:NM_027251:exon3:c.A1G:p.M1V"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.768415662	2	0.850805	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	62429617	12A2p6	cell line	sgMsh2	62429617	T	-	Deletion	Mutect2;Vardict	2	0.201	83	0	0	NA	exonic	Supv3l1	frameshift deletion	"Supv3l1:NM_001359806:exon15:c.1426delA:p.S476Vfs*41,Supv3l1:NM_181423:exon15:c.2143delA:p.S715Vfs*41"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.908538517	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr10	62937463	12A2p6	cell line	sgMsh2	62937463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	320	0	0	NA	exonic	Slc25a16	nonsynonymous SNV	Slc25a16:NM_175194:exon5:c.T467C:p.V156A	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.999968	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	62963968	12A2p6	cell line	sgMsh2	62963968	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	303	0	0	NA	exonic	Dna2	nonsynonymous SNV	Dna2:NM_177372:exon14:c.A2150G:p.E717G	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999994	GAG	nonsynonymous	GAG	9	GAGGAGGAG	NA
M8_p20	chr10	63130992	12A2p6	cell line	sgMsh2	63130992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	130	0	0	NA	exonic	Mypn	synonymous SNV	Mypn:NM_182992:exon13:c.T2904C:p.P968P	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9988903	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr10	63289239	12A2p6	cell line	sgMsh2	63289239	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	113	0	0	NA	exonic	Herc4	nonsynonymous SNV	"Herc4:NM_026101:exon14:c.T1631A:p.L544H,Herc4:NM_030114:exon14:c.T1631A:p.L544H"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9981234	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	63322046	12A2p6	cell line	sgMsh2	63322046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	309	0	0	NA	exonic	Sirt1	nonsynonymous SNV	"Sirt1:NM_001159589:exon7:c.T1471C:p.S491P,Sirt1:NM_019812:exon8:c.T1588C:p.S530P"	10qB4	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	68098190	12A2p6	cell line	sgMsh2	68098190	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	178	0	0	NA	exonic	Arid5b	synonymous SNV	Arid5b:NM_023598:exon10:c.T1881G:p.T627T	10qB5.2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.718694648	2	0.9846812	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr10	68778643	12A2p6	cell line	sgMsh2	68778643	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	194	0	0	NA	exonic	Tmem26	nonsynonymous SNV	Tmem26:NM_177794:exon6:c.T887C:p.L296P	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999383	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	69285714	12A2p6	cell line	sgMsh2	69285714	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	140	0	0	NA	exonic	Rhobtb1	nonsynonymous SNV	"Rhobtb1:NM_001081347:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252636:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252637:exon9:c.A1751C:p.K584T,Rhobtb1:NM_001252638:exon10:c.A1391C:p.K464T"	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.65993345	2	0.9912041	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	69898323	12A2p6	cell line	sgMsh2	69898323	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	197	0	0	NA	exonic	Ank3	synonymous SNV	"Ank3:NM_146005:exon20:c.T2328C:p.T776T,Ank3:NM_170688:exon20:c.T2328C:p.T776T,Ank3:NM_170689:exon20:c.T2328C:p.T776T,Ank3:NM_170690:exon20:c.T2328C:p.T776T,Ank3:NM_170728:exon20:c.T2328C:p.T776T,Ank3:NM_170729:exon20:c.T2328C:p.T776T"	10qB5.3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.768415662	2	0.8995186	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr10	75910173	12A2p6	cell line	sgMsh2	75910173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	108	0	0	NA	exonic	Smarcb1	synonymous SNV	"Smarcb1:NM_001161853:exon5:c.T582C:p.A194A,Smarcb1:NM_011418:exon5:c.T609C:p.A203A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr10	76369840	12A2p6	cell line	sgMsh2	76369840	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	47	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon34:c.A7677T:p.V2559V,Pcnt:NM_008787:exon34:c.A7731T:p.V2577V"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9704615	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr10	76420353	12A2p6	cell line	sgMsh2	76420353	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	51	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon12:c.C2052A:p.S684S,Pcnt:NM_008787:exon12:c.C2052A:p.S684S"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9749351	AGG	synonymous	GGA	8	GGAGGAGG	NA
M8_p20	chr10	76420356	12A2p6	cell line	sgMsh2	76420356	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	51	0	0	NA	exonic	Pcnt	synonymous SNV	"Pcnt:NM_001282992:exon12:c.C2049A:p.A683A,Pcnt:NM_008787:exon12:c.C2049A:p.A683A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	8.94E-05	AGG	synonymous	GGA	8	GGAGGAGG	NA
M8_p20	chr10	76470107	12A2p6	cell line	sgMsh2	76470107	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	132	0	0	NA	exonic	Mcm3ap	nonsynonymous SNV	Mcm3ap:NM_019434:exon2:c.C53T:p.S18F	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	0.9875133	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	76614891	12A2p6	cell line	sgMsh2	76614891	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	81	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon3:c.T205C:p.S69P,Col6a2:NM_146007:exon3:c.T205C:p.S69P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9928006	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	76712320	12A2p6	cell line	sgMsh2	76712320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	202	0	0	NA	exonic	Col6a1	nonsynonymous SNV	Col6a1:NM_009933:exon30:c.A1901G:p.K634R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9927973	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	76723537	12A2p6	cell line	sgMsh2	76723537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	74	0	0	NA	exonic	Col6a1	synonymous SNV	Col6a1:NM_009933:exon3:c.T264C:p.G88G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.8676576	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	76800762	12A2p6	cell line	sgMsh2	76800762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	152	0	0	NA	exonic	Pcbp3	nonsynonymous SNV	"Pcbp3:NM_001347216:exon4:c.A163G:p.K55E,Pcbp3:NM_021568:exon4:c.A163G:p.K55E"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9833805	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	77547133	12A2p6	cell line	sgMsh2	77547133	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	74	0	0	NA	exonic	Itgb2	synonymous SNV	Itgb2:NM_008404:exon5:c.T336C:p.A112A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.78649603	1	0.6155288	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr10	77711626	12A2p6	cell line	sgMsh2	77711626	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	271	0	0	NA	exonic	Gm10024	nonsynonymous SNV	Gm10024:NM_001081452:exon1:c.T170C:p.V57A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.869936	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	77866358	12A2p6	cell line	sgMsh2	77866358	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	157	0	0	NA	exonic	Tspear	synonymous SNV	Tspear:NM_001287074:exon4:c.A624G:p.K208K	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997063	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr10	78748680	12A2p6	cell line	sgMsh2	78748680	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	159	0	0	NA	exonic	Ccdc105	nonsynonymous SNV	Ccdc105:NM_027630:exon4:c.T1007G:p.L336R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.99973	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	78801841	12A2p6	cell line	sgMsh2	78801841	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	81	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon8:c.G1200T:p.E400D	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9928006	AGG	nonsynonymous	GGA	8	GGAGGAGG	NA
M8_p20	chr10	80028712	12A2p6	cell line	sgMsh2	80028712	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	43	0	0	NA	exonic	Arhgap45	nonsynonymous SNV	"Arhgap45:NM_027521:exon19:c.A2216C:p.K739T,Arhgap45:NM_001142701:exon20:c.A2564C:p.K855T,Arhgap45:NM_001347074:exon20:c.A2597C:p.K866T"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9652154	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80131289	12A2p6	cell line	sgMsh2	80131289	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	42	0	0	NA	exonic	Cbarp	stoploss	Cbarp:NM_001195268:exon9:c.A2096T:p.X699L	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9637689	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80169849	12A2p6	cell line	sgMsh2	80169849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	183	0	0	NA	exonic	Cirbp	synonymous SNV	"Cirbp:NM_001379421:exon2:c.A36G:p.G12G,Cirbp:NM_001379422:exon2:c.A36G:p.G12G,Cirbp:NM_001379423:exon2:c.A36G:p.G12G,Cirbp:NM_001379424:exon2:c.A36G:p.G12G,Cirbp:NM_001379425:exon2:c.A36G:p.G12G,Cirbp:NM_007705:exon2:c.A36G:p.G12G"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999019	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	80312014	12A2p6	cell line	sgMsh2	80312014	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	0	0	NA	exonic	Apc2	synonymous SNV	"Apc2:NM_011789:exon14:c.G2814A:p.P938P,Apc2:NM_001372237:exon15:c.G2901A:p.P967P,Apc2:NM_001372238:exon15:c.G2904A:p.P968P,Apc2:NM_001372239:exon15:c.G2829A:p.P943P,Apc2:NM_001372240:exon15:c.G2943A:p.P981P,Apc2:NM_001372241:exon15:c.G2940A:p.P980P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9914886	CGC	synonymous	GCTG	8	GCTGGCTG	NA
M8_p20	chr10	80315174	12A2p6	cell line	sgMsh2	80315174	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	50	0	0	NA	exonic	Apc2	nonsynonymous SNV	"Apc2:NM_011789:exon14:c.A5974G:p.T1992A,Apc2:NM_001372237:exon15:c.A6061G:p.T2021A,Apc2:NM_001372238:exon15:c.A6064G:p.T2022A,Apc2:NM_001372239:exon15:c.A5989G:p.T1997A,Apc2:NM_001372240:exon15:c.A6103G:p.T2035A,Apc2:NM_001372241:exon15:c.A6100G:p.T2034A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.727734832	1	0.006444673	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80323561	12A2p6	cell line	sgMsh2	80323561	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	56	0	0	NA	exonic	Pcsk4	stopgain	Pcsk4:NM_008793:exon11:c.T1304A:p.L435X	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9796055	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80360246	12A2p6	cell line	sgMsh2	80360246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.539	18	0	0	NA	exonic	Plk5	nonsynonymous SNV	"Plk5:NM_001347124:exon7:c.A736G:p.T246A,Plk5:NM_183152:exon7:c.A748G:p.T250A"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.093607	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80607014	12A2p6	cell line	sgMsh2	80607014	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	32	0	0	NA	exonic	Adat3	nonsynonymous SNV	Adat3:NM_001100606:exon2:c.A685G:p.I229V	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	9.90E-05	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80612359	12A2p6	cell line	sgMsh2	80612359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	57	0	0	NA	exonic	Scamp4	nonsynonymous SNV	Scamp4:NM_019575:exon6:c.T413C:p.V138A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9222542	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80668035	12A2p6	cell line	sgMsh2	80668035	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	171	0	0	NA	exonic	Mknk2	nonsynonymous SNV	Mknk2:NM_021462:exon12:c.G1041T:p.K347N	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998372	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80712880	12A2p6	cell line	sgMsh2	80712880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	93	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.A2462G:p.E821G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80712915	12A2p6	cell line	sgMsh2	80712915	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	86	0	0	NA	exonic	Ap3d1	nonsynonymous SNV	Ap3d1:NM_007460:exon21:c.T2427A:p.S809R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.09554447	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	80897972	12A2p6	cell line	sgMsh2	80897972	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	55	0	0	NA	exonic	Tmprss9	nonsynonymous SNV	Tmprss9:NM_001081688:exon16:c.A2867G:p.D956G	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9787452	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	81271112	12A2p6	cell line	sgMsh2	81271112	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	41	0	0	NA	exonic	Apba3	nonsynonymous SNV	Apba3:NM_018758:exon4:c.A752G:p.K251R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.8593206	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	81509375	12A2p6	cell line	sgMsh2	81509375	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	200	0	0	NA	exonic	Gna15	nonsynonymous SNV	Gna15:NM_010304:exon5:c.T655C:p.W219R	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999521	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	81586866	12A2p6	cell line	sgMsh2	81586866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	92	0	0	NA	exonic	Tle2	synonymous SNV	"Tle2:NM_001252401:exon14:c.T1155C:p.F385F,Tle2:NM_019725:exon14:c.T1260C:p.F420F"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9326221	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr10	81595483	12A2p6	cell line	sgMsh2	81595483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	104	0	0	NA	exonic	Tle6	nonsynonymous SNV	"Tle6:NM_001359134:exon3:c.T418C:p.S140P,Tle6:NM_001359135:exon3:c.T418C:p.S140P,Tle6:NM_001346695:exon6:c.T637C:p.S213P,Tle6:NM_053254:exon6:c.T637C:p.S213P"	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9972592	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	88782587	12A2p6	cell line	sgMsh2	88782587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	131	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3550G:p.T1184A	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991209	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	88782628	12A2p6	cell line	sgMsh2	88782628	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	125	0	0	NA	exonic	Utp20	nonsynonymous SNV	Utp20:NM_175158:exon28:c.A3509G:p.Y1170C	10qC1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.844209	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	89712524	12A2p6	cell line	sgMsh2	89712524	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	158	0	0	NA	exonic	Actr6	nonsynonymous SNV	"Actr6:NM_001359468:exon11:c.A774G:p.I258M,Actr6:NM_001359469:exon11:c.A513G:p.I171M,Actr6:NM_025914:exon11:c.A1098G:p.I366M"	10qC2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.9986767	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	99003179	12A2p6	cell line	sgMsh2	99003179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	137	0	0	NA	exonic	Atp2b1	nonsynonymous SNV	"Atp2b1:NM_001359506:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359507:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359508:exon12:c.T1868C:p.V623A,Atp2b1:NM_001359509:exon12:c.T1868C:p.V623A,Atp2b1:NM_026482:exon12:c.T1868C:p.V623A"	10qC3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993173	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	105413234	12A2p6	cell line	sgMsh2	105413234	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	87	0	0	NA	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon2:c.C637A:p.L213M	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9944015	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	108240178	12A2p6	cell line	sgMsh2	108240178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	104	0	0	NA	exonic	Ppp1r12a	nonsynonymous SNV	"Ppp1r12a:NM_001368736:exon6:c.T866C:p.L289P,Ppp1r12a:NM_001368737:exon6:c.T866C:p.L289P,Ppp1r12a:NM_027892:exon6:c.T866C:p.L289P"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9972592	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	109705616	12A2p6	cell line	sgMsh2	109705616	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.298	354	0	0	NA	exonic	Nav3	frameshift deletion	"Nav3:NM_001368815:exon30:c.5764delA:p.T1922Lfs*5,Nav3:NM_001081035:exon31:c.5785delA:p.T1929Lfs*5"	10qD1	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8_p20	chr10	115343855	12A2p6	cell line	sgMsh2	115343855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	124	0	0	NA	exonic	Tmem19	synonymous SNV	"Tmem19:NM_001359470:exon5:c.T735C:p.G245G,Tmem19:NM_001359471:exon6:c.T690C:p.G230G,Tmem19:NM_001359472:exon6:c.T690C:p.G230G,Tmem19:NM_133683:exon6:c.T690C:p.G230G"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9938343	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	117670187	12A2p6	cell line	sgMsh2	117670187	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	146	0	0	NA	exonic	Cpm	nonsynonymous SNV	Cpm:NM_027468:exon5:c.A452G:p.D151G	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9986213	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	120784086	12A2p6	cell line	sgMsh2	120784086	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	94	0	0	NA	exonic	Msrb3	synonymous SNV	Msrb3:NM_177092:exon7:c.A543G:p.A181A	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9958269	CTG	synonymous	CTG	12	CTGCTGCTGCTG	NA
M8_p20	chr10	121301968	12A2p6	cell line	sgMsh2	121301968	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	132	0	0	NA	exonic	Tbc1d30	nonsynonymous SNV	"Tbc1d30:NM_029057:exon5:c.T566A:p.V189E,Tbc1d30:NM_001361015:exon6:c.T935A:p.V312E"	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	0.9991572	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	121552504	12A2p6	cell line	sgMsh2	121552504	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	192	0	0	NA	exonic	Tbk1	nonsynonymous SNV	Tbk1:NM_019786:exon17:c.A1766T:p.K589I	10qD2	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999329	TTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr10	126006862	12A2p6	cell line	sgMsh2	126006862	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	179	0	0	NA	exonic	Lrig3	nonsynonymous SNV	Lrig3:NM_177152:exon13:c.T1655C:p.L552P	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.908538517	1	0.9914233	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	126894228	12A2p6	cell line	sgMsh2	126894228	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	57	0	0	NA	exonic	Atp23	synonymous SNV	"Atp23:NM_001159559:exon4:c.G450A:p.S150S,Atp23:NM_001358969:exon4:c.G450A:p.S150S,Atp23:NM_001358970:exon4:c.G450A:p.S150S,Atp23:NM_026858:exon4:c.G450A:p.S150S"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	1	9.96E-07	CCG	synonymous	NA	NA	NA	NA
M8_p20	chr10	127170070	12A2p6	cell line	sgMsh2	127170070	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	186	0	0	NA	exonic	B4galnt1	frameshift deletion	"B4galnt1:NM_001358578:exon6:c.913delT:p.Y306Tfs*5,B4galnt1:NM_001358577:exon7:c.805delT:p.Y270Tfs*5,B4galnt1:NM_027739:exon7:c.1012delT:p.Y339Tfs*5,B4galnt1:NM_008080:exon8:c.904delT:p.Y303Tfs*5"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr10	127495153	12A2p6	cell line	sgMsh2	127495153	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	48	0	0	NA	exonic	R3hdm2	frameshift deletion	"R3hdm2:NM_001168293:exon21:c.2500delG:p.G835Vfs*41,R3hdm2:NM_001359245:exon21:c.2500delG:p.G835Vfs*41,R3hdm2:NM_001359246:exon21:c.2542delG:p.G849Vfs*41,R3hdm2:NM_027900:exon21:c.2461delG:p.G822Vfs*41,R3hdm2:NM_001359243:exon22:c.2596delG:p.G867Vfs*41,R3hdm2:NM_001168292:exon23:c.2596delG:p.G867Vfs*41,R3hdm2:NM_001359244:exon23:c.2500delG:p.G835Vfs*41"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8_p20	chr10	127507980	12A2p6	cell line	sgMsh2	127507980	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	158	0	0	NA	exonic	Stac3	nonsynonymous SNV	"Stac3:NM_001359751:exon10:c.A829G:p.N277D,Stac3:NM_177707:exon10:c.A829G:p.N277D"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	127556941	12A2p6	cell line	sgMsh2	127556941	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	97	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon51:c.T8254C:p.W2752R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9963212	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	127568478	12A2p6	cell line	sgMsh2	127568478	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	146	0	0	NA	exonic	Lrp1	nonsynonymous SNV	Lrp1:NM_008512:exon38:c.T6064C:p.Y2022H	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9953626	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	127572499	12A2p6	cell line	sgMsh2	127572499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	119	0	0	NA	exonic	Lrp1	synonymous SNV	Lrp1:NM_008512:exon32:c.T5307C:p.R1769R	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.7530134	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	128137992	12A2p6	cell line	sgMsh2	128137992	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	209	0	0	NA	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon7:c.T666C:p.G222G,Rbms2:NM_001039080:exon8:c.T582C:p.G194G"	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	0.908538517	1	0.9949994	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr10	129472938	12A2p6	cell line	sgMsh2	129472938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	174	0	0	NA	exonic	Olfr788	nonsynonymous SNV	Olfr788:NM_146551:exon1:c.T245C:p.I82T	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998566	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	129501829	12A2p6	cell line	sgMsh2	129501829	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	81	0	0	NA	exonic	Olfr790	nonsynonymous SNV	Olfr790:NM_146933:exon1:c.T944C:p.F315S	10qD3	chr10-3120209-129526639	4	2	2	0.9	4.068082914	NA	1	1	1	0.9928006	TTC	nonsynonymous	TTCTT	10	TTCTTTTCTT	NA
M8_p20	chr10	129626025	12A2p6	cell line	sgMsh2	129626025	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	84	0	0	NA	exonic	Olfr798	nonsynonymous SNV	Olfr798:NM_146556:exon1:c.T35C:p.L12P	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	129857300	12A2p6	cell line	sgMsh2	129857300	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	160	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.T781C:p.S261P	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	129902186	12A2p6	cell line	sgMsh2	129902186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	287	0	0	NA	exonic	Olfr815	nonsynonymous SNV	Olfr815:NM_146670:exon1:c.T541C:p.F181L	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr10	130472110	12A2p6	cell line	sgMsh2	130472110	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.211	363	0	0	NA	exonic	Vmn2r87	frameshift deletion	Vmn2r87:NM_001103366:exon6:c.2258delT:p.L753Wfs*24	10qD3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr11	3530266	12A2p6	cell line	sgMsh2	3530266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	118	0	0	NA	exonic	Smtn	synonymous SNV	"Smtn:NM_001284427:exon10:c.A954G:p.A318A,Smtn:NM_013870:exon10:c.A954G:p.A318A,Smtn:NM_001159284:exon11:c.A954G:p.A318A,Smtn:NM_001284428:exon11:c.A954G:p.A318A,Smtn:NM_001284429:exon11:c.A207G:p.A69A"	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9984797	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	3819913	12A2p6	cell line	sgMsh2	3819913	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	161	0	0	NA	exonic	Osbp2	nonsynonymous SNV	"Osbp2:NM_001363163:exon2:c.G768T:p.E256D,Osbp2:NM_152818:exon2:c.G768T:p.E256D"	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.824941	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	5064278	12A2p6	cell line	sgMsh2	5064278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	39	0	0	NA	exonic	Gas2l1	nonsynonymous SNV	"Gas2l1:NM_001190406:exon2:c.A181G:p.T61A,Gas2l1:NM_001190408:exon2:c.A181G:p.T61A,Gas2l1:NM_030228:exon3:c.A181G:p.T61A,Gas2l1:NM_144560:exon3:c.A181G:p.T61A"	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9590719	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	5867682	12A2p6	cell line	sgMsh2	5867682	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	152	0	0	NA	exonic	Aebp1	nonsynonymous SNV	"Aebp1:NM_001291857:exon10:c.A1169G:p.N390S,Aebp1:NM_009636:exon10:c.A1166G:p.N389S"	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.781975938	2	0.6907594	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	6402468	12A2p6	cell line	sgMsh2	6402468	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	121	0	0	NA	exonic	Zmiz2	nonsynonymous SNV	"Zmiz2:NM_001005867:exon14:c.T1826C:p.V609A,Zmiz2:NM_028601:exon14:c.T1922C:p.V641A"	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.7776656	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	6601620	12A2p6	cell line	sgMsh2	6601620	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	228	0	0	NA	exonic	Nacad	nonsynonymous SNV	Nacad:NM_001081652:exon2:c.A1570T:p.S524C	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999853	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	9434252	12A2p6	cell line	sgMsh2	9434252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	150	0	0	NA	exonic	Abca13	synonymous SNV	Abca13:NM_178259:exon38:c.T11703C:p.R3901R	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996054	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	11116426	12A2p6	cell line	sgMsh2	11116426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	75	0	0	NA	exonic	Vwc2	synonymous SNV	Vwc2:NM_177033:exon2:c.T513C:p.G171G	11qA1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9907462	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr11	18884424	12A2p6	cell line	sgMsh2	18884424	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	109	0	0	NA	exonic	Meis1	synonymous SNV	"Meis1:NM_001193271:exon11:c.A1077G:p.V359V,Meis1:NM_010789:exon11:c.A1077G:p.V359V"	11qA3.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	8.46E-06	TTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	20072531	12A2p6	cell line	sgMsh2	20072531	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	207	0	0	NA	exonic	Actr2	synonymous SNV	"Actr2:NM_146243:exon8:c.G939T:p.L313L,Actr2:NM_001362899:exon9:c.G954T:p.L318L"	11qA3.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999643	GCA	synonymous	NA	NA	NA	NA
M8_p20	chr11	21712059	12A2p6	cell line	sgMsh2	21712059	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	118	0	0	NA	exonic	Wdpcp	synonymous SNV	"Wdpcp:NM_001364768:exon9:c.C1093T:p.L365L,Wdpcp:NM_145425:exon10:c.C1330T:p.L444L"	11qA3.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9778223	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr11	21857566	12A2p6	cell line	sgMsh2	21857566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	174	0	0	NA	exonic	Wdpcp	nonsynonymous SNV	"Wdpcp:NM_001364768:exon14:c.A1705G:p.M569V,Wdpcp:NM_145425:exon15:c.A1942G:p.M648V"	11qA3.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.809096491	1	8.61E-08	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	23756971	12A2p6	cell line	sgMsh2	23756971	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	239	0	0	NA	exonic	Rel	nonsynonymous SNV	Rel:NM_009044:exon3:c.A230G:p.H77R	11qA3.2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999908	ATG	nonsynonymous	ATGAGG	12	ATGAGGATGAGG	NA
M8_p20	chr11	29188119	12A2p6	cell line	sgMsh2	29188119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	184	0	0	NA	exonic	Ppp4r3b	nonsynonymous SNV	"Ppp4r3b:NM_001363358:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363359:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363360:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363361:exon4:c.C466T:p.P156S,Ppp4r3b:NM_001363362:exon4:c.C466T:p.P156S,Ppp4r3b:NM_134034:exon4:c.C466T:p.P156S"	11qA3.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9989	ACC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	31058897	12A2p6	cell line	sgMsh2	31058897	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	325	0	0	NA	exonic	Asb3	nonsynonymous SNV	Asb3:NM_023906:exon6:c.G680A:p.C227Y	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	31872839	12A2p6	cell line	sgMsh2	31872839	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	121	0	0	NA	exonic	Cpeb4	nonsynonymous SNV	"Cpeb4:NM_001290676:exon1:c.T552A:p.N184K,Cpeb4:NM_001290678:exon1:c.T552A:p.N184K,Cpeb4:NM_026252:exon1:c.T552A:p.N184K"	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9986602	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	32499394	12A2p6	cell line	sgMsh2	32499394	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	148	0	0	NA	exonic	Ubtd2	synonymous SNV	Ubtd2:NM_173784:exon2:c.T240G:p.A80A	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995707	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	34047375	12A2p6	cell line	sgMsh2	34047375	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	148	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon1:c.T22C:p.F8L	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995707	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	34082415	12A2p6	cell line	sgMsh2	34082415	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	217	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon16:c.A992T:p.Q331L	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.999804	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	34089644	12A2p6	cell line	sgMsh2	34089644	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	201	0	0	NA	exonic	Lcp2	nonsynonymous SNV	Lcp2:NM_010696:exon20:c.A1443T:p.Q481H	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999541	AAG	nonsynonymous	AAGTC	10	AAGTCAAGTC	NA
M8_p20	chr11	34282686	12A2p6	cell line	sgMsh2	34282686	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	95	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon33:c.G3313A:p.A1105T	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	34688463	12A2p6	cell line	sgMsh2	34688463	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	314	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon21:c.T2122A:p.L708M	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999996	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	34708904	12A2p6	cell line	sgMsh2	34708904	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	91	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon10:c.C847A:p.L283I	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.09190016	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	35841799	12A2p6	cell line	sgMsh2	35841799	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	40	0	0	NA	exonic	Wwc1	synonymous SNV	Wwc1:NM_170779:exon21:c.T3081C:p.R1027R	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9606994	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr11	36008549	12A2p6	cell line	sgMsh2	36008549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	199	0	0	NA	exonic	Tenm2	nonsynonymous SNV	"Tenm2:NM_001290702:exon28:c.A7688G:p.Y2563C,Tenm2:NM_011856:exon29:c.A7781G:p.Y2594C"	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	GTA	nonsynonymous	AGT	8	AGTAGTAG	NA
M8_p20	chr11	36047474	12A2p6	cell line	sgMsh2	36047474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	189	0	0	NA	exonic	Tenm2	synonymous SNV	"Tenm2:NM_001290702:exon22:c.A4278G:p.K1426K,Tenm2:NM_011856:exon23:c.A4371G:p.K1457K"	11qA4	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	0.6064965	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	42000229	12A2p6	cell line	sgMsh2	42000229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	190	0	0	NA	exonic	Gabrg2	synonymous SNV	"Gabrg2:NM_008073:exon1:c.A102G:p.P34P,Gabrg2:NM_177408:exon1:c.A102G:p.P34P,Gabrg2:NM_001362655:exon2:c.A48G:p.P16P,Gabrg2:NM_001362656:exon2:c.A45G:p.P15P"	11qA5	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.999927	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	42421368	12A2p6	cell line	sgMsh2	42421368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	111	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon1:c.A19G:p.R7G,Gabrb2:NM_001362647:exon1:c.A19G:p.R7G,Gabrb2:NM_001362646:exon2:c.A19G:p.R7G,Gabrb2:NM_008070:exon2:c.A19G:p.R7G"	11qA5	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9979585	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	42529438	12A2p6	cell line	sgMsh2	42529438	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	330	0	0	NA	exonic	Gabrb2	nonsynonymous SNV	"Gabrb2:NM_001347314:exon5:c.T485G:p.M162R,Gabrb2:NM_001362647:exon5:c.T485G:p.M162R,Gabrb2:NM_001362649:exon5:c.T389G:p.M130R,Gabrb2:NM_001362646:exon6:c.T485G:p.M162R,Gabrb2:NM_008070:exon6:c.T485G:p.M162R"	11qA5	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	43420347	12A2p6	cell line	sgMsh2	43420347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	237	0	0	NA	exonic	Pttg1	synonymous SNV	"Pttg1:NM_001131054:exon6:c.T582C:p.C194C,Pttg1:NM_001362799:exon6:c.T582C:p.C194C"	11qB1.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999899	AAC	synonymous	AACA	8	AACAAACA	NA
M8_p20	chr11	43556667	12A2p6	cell line	sgMsh2	43556667	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	72	0	0	NA	exonic	Ccnjl	nonsynonymous SNV	Ccnjl:NM_001045530:exon3:c.G176T:p.R59L	11qB1.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9895109	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	47125635	12A2p6	cell line	sgMsh2	47125635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	100	0	0	NA	exonic	Sgcd	synonymous SNV	Sgcd:NM_011891:exon5:c.A399G:p.A133A	11qB1.1	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr11	49317642	12A2p6	cell line	sgMsh2	49317642	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	357	0	0	NA	exonic	Olfr10	stopgain	Olfr10:NM_206822:exon1:c.T95A:p.L32X	11qB1.2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	49341398	12A2p6	cell line	sgMsh2	49341398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	302	0	0	NA	exonic	Olfr1390	nonsynonymous SNV	Olfr1390:NM_147065:exon1:c.T865C:p.Y289H	11qB1.2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999994	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	49664983	12A2p6	cell line	sgMsh2	49664983	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	64	0	0	NA	exonic	Scgb3a1	nonsynonymous SNV	"Scgb3a1:NM_054037:exon3:c.T307A:p.F103I,Scgb3a1:NM_170727:exon4:c.T277A:p.F93I"	11qB1.2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9662252	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	50237259	12A2p6	cell line	sgMsh2	50237259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	24	0	0	NA	exonic	Ltc4s	nonsynonymous SNV	"Ltc4s:NM_001313968:exon3:c.A164T:p.N55I,Ltc4s:NM_008521:exon3:c.A164T:p.N55I"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9252788	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	50838529	12A2p6	cell line	sgMsh2	50838529	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	199	0	0	NA	exonic	Zfp879	nonsynonymous SNV	Zfp879:NM_173387:exon3:c.T41A:p.V14E	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	51267303	12A2p6	cell line	sgMsh2	51267303	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	184	0	0	NA	exonic	Clk4	nonsynonymous SNV	Clk4:NM_007714:exon2:c.C133T:p.P45S	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999059	ACC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	51645624	12A2p6	cell line	sgMsh2	51645624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	98	0	0	NA	exonic	N4bp3	nonsynonymous SNV	N4bp3:NM_145974:exon3:c.T380A:p.M127K	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.9218207	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	53407913	12A2p6	cell line	sgMsh2	53407913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	136	0	0	NA	exonic	Aff4	frameshift deletion	"Aff4:NM_001363331:exon14:c.2670delA:p.K892Nfs*22,Aff4:NM_033565:exon15:c.2757delA:p.K921Nfs*22"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr11	53586882	12A2p6	cell line	sgMsh2	53586882	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	81	0	0	NA	exonic	Kif3a	nonsynonymous SNV	"Kif3a:NM_001290805:exon9:c.G1177A:p.E393K,Kif3a:NM_001290806:exon9:c.G1177A:p.E393K,Kif3a:NM_008443:exon9:c.G1177A:p.E393K"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9928006	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	53683327	12A2p6	cell line	sgMsh2	53683327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	95	0	0	NA	exonic	Rad50	synonymous SNV	Rad50:NM_009012:exon13:c.A2082G:p.L694L	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	54853256	12A2p6	cell line	sgMsh2	54853256	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	264	0	0	NA	exonic	Lyrm7	nonsynonymous SNV	"Lyrm7:NM_001363191:exon2:c.T62G:p.V21G,Lyrm7:NM_029327:exon2:c.T62G:p.V21G"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999968	AAC	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr11	54916898	12A2p6	cell line	sgMsh2	54916898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	35	0	0	NA	exonic	Tnip1	synonymous SNV	"Tnip1:NM_001199276:exon15:c.A1557G:p.V519V,Tnip1:NM_001271455:exon16:c.A1557G:p.V519V,Tnip1:NM_021327:exon16:c.A1716G:p.V572V,Tnip1:NM_001199275:exon17:c.A1716G:p.V572V,Tnip1:NM_001271456:exon17:c.A1716G:p.V572V"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9518871	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	57217902	12A2p6	cell line	sgMsh2	57217902	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	90	0	0	NA	exonic	Gria1	nonsynonymous SNV	"Gria1:NM_001113325:exon6:c.A830G:p.D277G,Gria1:NM_001252403:exon6:c.A623G:p.D208G,Gria1:NM_008165:exon6:c.A830G:p.D277G"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9950637	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	57528173	12A2p6	cell line	sgMsh2	57528173	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	153	0	0	NA	exonic	Mfap3	nonsynonymous SNV	"Mfap3:NM_145426:exon2:c.A158T:p.D53V,Mfap3:NM_180599:exon2:c.A158T:p.D53V"	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996523	GAT	nonsynonymous	TGA	8	TGATGATG	NA
M8_p20	chr11	58207230	12A2p6	cell line	sgMsh2	58207230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	126	0	0	NA	exonic	Igtp	nonsynonymous SNV	Igtp:NM_018738:exon3:c.T1226C:p.L409P	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989147	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	58665966	12A2p6	cell line	sgMsh2	58665966	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	94	0	0	NA	exonic	Olfr322	nonsynonymous SNV	Olfr322:NM_207693:exon1:c.A406G:p.M136V	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9958269	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	58757857	12A2p6	cell line	sgMsh2	58757857	G	A	SNV	Mutect2;Vardict	2	0.07	560	0	0	NA	exonic	Olfr316	nonsynonymous SNV	Olfr316:NM_001011818:exon1:c.G191A:p.S64N	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.316406449	3	1	AGC	nonsynonymous	CAGC	8	CAGCCAGC	NA
M8_p20	chr11	59129756	12A2p6	cell line	sgMsh2	59129756	T	C	SNV	Mutect2;Vardict	2	0.167	128	0	0	NA	exonic	Obscn	nonsynonymous SNV	Obscn:NM_199152:exon7:c.A2461G:p.T821A	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.754855385	2	0.7944773	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	59759560	12A2p6	cell line	sgMsh2	59759560	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	48	0	0	NA	exonic	Mprip	synonymous SNV	Mprip:NM_001368931:exon16:c.T4551G:p.A1517A	11qB1.3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9716478	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	60706572	12A2p6	cell line	sgMsh2	60706572	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	53	0	0	NA	exonic	Llgl1	synonymous SNV	"Llgl1:NM_001159404:exon7:c.C846T:p.Y282Y,Llgl1:NM_001159405:exon7:c.C846T:p.Y282Y,Llgl1:NM_001378836:exon7:c.C843T:p.Y281Y,Llgl1:NM_001378837:exon7:c.C843T:p.Y281Y,Llgl1:NM_008502:exon7:c.C846T:p.Y282Y"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9769169	ACG	synonymous	NA	NA	NA	NA
M8_p20	chr11	60720712	12A2p6	cell line	sgMsh2	60720712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	77	0	0	NA	exonic	Flii	nonsynonymous SNV	"Flii:NM_001302207:exon11:c.A1172G:p.N391S,Flii:NM_022009:exon11:c.A1172G:p.N391S"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.781975938	1	0.5834547	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	61546578	12A2p6	cell line	sgMsh2	61546578	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	110	0	0	NA	exonic	Epn2	nonsynonymous SNV	"Epn2:NM_001252189:exon2:c.T167G:p.I56S,Epn2:NM_001362585:exon2:c.T167G:p.I56S,Epn2:NM_010148:exon2:c.T167G:p.I56S,Epn2:NM_001252188:exon3:c.T167G:p.I56S,Epn2:NM_001362586:exon3:c.T167G:p.I56S,Epn2:NM_001362587:exon4:c.T167G:p.I56S"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.682533911	2	0.9517726	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	61707657	12A2p6	cell line	sgMsh2	61707657	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	45	0	0	NA	exonic	Fam83g	nonsynonymous SNV	Fam83g:NM_178618:exon5:c.C2369A:p.A790D	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9679424	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	62378633	12A2p6	cell line	sgMsh2	62378633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	79	0	0	NA	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon17:c.A1937G:p.N646S,Ncor1:NM_011308:exon17:c.A1937G:p.N646S"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9921718	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	62552253	12A2p6	cell line	sgMsh2	62552253	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	113	0	0	NA	exonic	Ubb	frameshift deletion	"Ubb:NM_001313984:exon2:c.108delC:p.P38Lfs*5,Ubb:NM_011664:exon2:c.108delC:p.P38Lfs*5"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8_p20	chr11	62552681	12A2p6	cell line	sgMsh2	62552681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	154	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.A536G:p.K179R,Ubb:NM_011664:exon2:c.A536G:p.K179R"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.863337596	1	0.9216363	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	62552867	12A2p6	cell line	sgMsh2	62552867	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.262	410	0	0	NA	exonic	Ubb	nonsynonymous SNV	"Ubb:NM_001313984:exon2:c.T722G:p.I241S,Ubb:NM_011664:exon2:c.T722G:p.I241S"	11qB2	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	7.81E-09	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	65005504	12A2p6	cell line	sgMsh2	65005504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	202	0	0	NA	exonic	Arhgap44	synonymous SNV	Arhgap44:NM_175003:exon20:c.T2289C:p.A763A	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9989409	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr11	65184614	12A2p6	cell line	sgMsh2	65184614	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	126	0	0	NA	exonic	Myocd	nonsynonymous SNV	Myocd:NM_145136:exon11:c.A2067C:p.E689D	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989147	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	66094123	12A2p6	cell line	sgMsh2	66094123	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	124	0	0	NA	exonic	Dnah9	nonsynonymous SNV	Dnah9:NM_001099633:exon19:c.A3619G:p.R1207G	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9988193	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	67178840	12A2p6	cell line	sgMsh2	67178840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	333	0	0	NA	exonic	Myh2	synonymous SNV	Myh2:NM_001039545:exon12:c.T1011C:p.S337S	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9999986	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	67211360	12A2p6	cell line	sgMsh2	67211360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	315	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon22:c.C2476A:p.R826S	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.9899289	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	67258685	12A2p6	cell line	sgMsh2	67258685	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	120	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon36:c.A5242G:p.I1748V	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9986025	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	67259101	12A2p6	cell line	sgMsh2	67259101	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	200	0	0	NA	exonic	Myh4	nonsynonymous SNV	Myh4:NM_010855:exon38:c.G5485A:p.E1829K	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999521	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	68793263	12A2p6	cell line	sgMsh2	68793263	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	35	0	0	NA	exonic	Myh10	synonymous SNV	Myh10:NM_175260:exon26:c.A3501G:p.E1167E	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	2	1	1	0.9518871	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr11	69033235	12A2p6	cell line	sgMsh2	69033235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	370	0	0	NA	exonic	Ctc1	nonsynonymous SNV	"Ctc1:NM_001013256:exon16:c.T2707C:p.C903R,Ctc1:NM_001143790:exon16:c.T2704C:p.C902R,Ctc1:NM_001281464:exon16:c.T1966C:p.C656R,Ctc1:NM_001281465:exon16:c.T1969C:p.C657R"	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	1	1	3.78E-08	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	69185730	12A2p6	cell line	sgMsh2	69185730	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	100	0	0	NA	exonic	Alox8	synonymous SNV	Alox8:NM_009661:exon13:c.A1842G:p.E614E	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.822656767	1	0.7424532	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	69578916	12A2p6	cell line	sgMsh2	69578916	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	42	0	0	NA	exonic	Wrap53	nonsynonymous SNV	"Wrap53:NM_144824:exon1:c.A137C:p.D46A,Wrap53:NM_001364769:exon2:c.A137C:p.D46A"	11qB3	chr11-3133133-69579350	4	2	2	0.9	4.068082914	NA	1	0.750335293	1	0.6238878	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	69741013	12A2p6	cell line	sgMsh2	69741013	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	94	0	0	NA	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon19:c.T3226C:p.F1076L	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.949219347	1	0.9854878	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	69778138	12A2p6	cell line	sgMsh2	69778138	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	20	0	0	NA	exonic	Zbtb4	synonymous SNV	"Zbtb4:NM_001363178:exon4:c.G1686A:p.G562G,Zbtb4:NM_029348:exon4:c.G1686A:p.G562G"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	2	1	1	0.9123907	GGA	synonymous	NA	NA	NA	NA
M8_p20	chr11	69912027	12A2p6	cell line	sgMsh2	69912027	C	-	Deletion	Mutect2;Vardict	2	0.309	18	0	0	NA	exonic	Neurl4	frameshift deletion	"Neurl4:NM_001291119:exon27:c.4348delC:p.P1451Lfs*91,Neurl4:NM_001013414:exon28:c.4420delC:p.P1475Lfs*91,Neurl4:NM_001291118:exon28:c.4414delC:p.P1473Lfs*91"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr11	69944246	12A2p6	cell line	sgMsh2	69944246	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	24	0	0	NA	exonic	Slc2a4	nonsynonymous SNV	"Slc2a4:NM_001359114:exon10:c.T863C:p.M288T,Slc2a4:NM_009204:exon10:c.T1139C:p.M380T"	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.940179162	1	0.000974445	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	70017427	12A2p6	cell line	sgMsh2	70017427	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	81	0	0	NA	exonic	Dlg4	synonymous SNV	Dlg4:NM_001370675:exon2:c.A25C:p.R9R	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9928006	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr11	70219049	12A2p6	cell line	sgMsh2	70219049	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	95	0	0	NA	exonic	Slc16a13	nonsynonymous SNV	Slc16a13:NM_172371:exon3:c.T625C:p.S209P	11qB3	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9959986	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	72030255	12A2p6	cell line	sgMsh2	72030255	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.125	62	0	0	NA	exonic	Aipl1	nonsynonymous SNV	Aipl1:NM_053245:exon5:c.T736C:p.Y246H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.565011516	2	0.7951144	TAC	nonsynonymous	CTC	8	CTCCTCCT	NA
M8_p20	chr11	72058021	12A2p6	cell line	sgMsh2	72058021	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.21	154	0	0	NA	exonic	Pitpnm3	nonsynonymous SNV	"Pitpnm3:NM_001081641:exon16:c.C2257T:p.R753W,Pitpnm3:NM_001024927:exon17:c.C2305T:p.R769W"	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.949219347	1	0.9973931	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	72442579	12A2p6	cell line	sgMsh2	72442579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	265	0	0	NA	exonic	Mybbp1a	synonymous SNV	Mybbp1a:NM_016776:exon4:c.A382C:p.R128R	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9999969	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr11	72540495	12A2p6	cell line	sgMsh2	72540495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	97	0	0	NA	exonic	Spns3	nonsynonymous SNV	Spns3:NM_029932:exon3:c.T334C:p.Y112H	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9963212	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	72975415	12A2p6	cell line	sgMsh2	72975415	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	59	0	0	NA	exonic	Atp2a3	nonsynonymous SNV	"Atp2a3:NM_001163336:exon8:c.C860A:p.S287Y,Atp2a3:NM_001163337:exon8:c.C860A:p.S287Y,Atp2a3:NM_016745:exon8:c.C860A:p.S287Y"	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9819865	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	73602988	12A2p6	cell line	sgMsh2	73602988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	304	0	0	NA	exonic	Olfr384	nonsynonymous SNV	Olfr384:NM_207224:exon1:c.T407C:p.M136T	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9999994	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	73787842	12A2p6	cell line	sgMsh2	73787842	A	-	Deletion	Mutect2;Vardict	2	0.24	66	0	0	NA	exonic	Olfr390	frameshift deletion	Olfr390:NM_146347:exon1:c.903delA:p.V304Cfs*8	11qB4	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr11	75162844	12A2p6	cell line	sgMsh2	75162844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	237	0	0	NA	exonic	Smg6	nonsynonymous SNV	Smg6:NM_001002764:exon19:c.A4151G:p.E1384G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9999899	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	75167239	12A2p6	cell line	sgMsh2	75167239	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.364	11	0	0	NA	exonic	Hic1	nonsynonymous SNV	"Hic1:NM_001098203:exon2:c.G343A:p.A115T,Hic1:NM_010430:exon2:c.G823A:p.A275T"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	2	1	1	0.8740556	GCT	nonsynonymous	GCT	14	GCTGCTGCTGCTGC	NA
M8_p20	chr11	75515650	12A2p6	cell line	sgMsh2	75515650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	49	0	0	NA	exonic	Scarf1	synonymous SNV	Scarf1:NM_001004157:exon4:c.T759C:p.P253P	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.70061428	2	0.5639665	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	75669017	12A2p6	cell line	sgMsh2	75669017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	242	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon20:c.A1926G:p.S642S,Myo1c:NM_001080775:exon20:c.A1974G:p.S658S,Myo1c:NM_001370611:exon20:c.A2031G:p.S677S,Myo1c:NM_008659:exon20:c.A1926G:p.S642S"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9999919	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr11	76022158	12A2p6	cell line	sgMsh2	76022158	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	75	0	0	NA	exonic	Rflnb	nonsynonymous SNV	Rflnb:NM_029658:exon3:c.T403C:p.C135R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.922098794	1	0.9583185	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	76243877	12A2p6	cell line	sgMsh2	76243877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	23	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon1:c.T105C:p.R35R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9222463	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	76250187	12A2p6	cell line	sgMsh2	76250187	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.15	122	0	0	NA	exonic	Mrm3	synonymous SNV	Mrm3:NM_183263:exon4:c.T1020C:p.Y340Y	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.678013819	2	0.9733193	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr11	76250422	12A2p6	cell line	sgMsh2	76250422	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	55	0	0	NA	exonic	Mrm3	stoploss	Mrm3:NM_183263:exon4:c.T1255G:p.X419G	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9787452	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	77827828	12A2p6	cell line	sgMsh2	77827828	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	64	0	0	NA	exonic	Myo18a	nonsynonymous SNV	"Myo18a:NM_001291214:exon15:c.C1761A:p.H587Q,Myo18a:NM_011586:exon16:c.C2766A:p.H922Q,Myo18a:NM_001291212:exon17:c.C2802A:p.H934Q,Myo18a:NM_001291213:exon17:c.C2910A:p.H970Q,Myo18a:NM_001291215:exon18:c.C1827A:p.H609Q"	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9853621	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	78273810	12A2p6	cell line	sgMsh2	78273810	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	70	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon20:c.T3713C:p.V1238A	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9885981	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	78315591	12A2p6	cell line	sgMsh2	78315591	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	101	0	0	NA	exonic	Spag5	nonsynonymous SNV	Spag5:NM_017407:exon14:c.G2408A:p.R803Q	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9968906	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	79935988	12A2p6	cell line	sgMsh2	79935988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	115	0	0	NA	exonic	Utp6	synonymous SNV	Utp6:NM_144826:exon19:c.A1761G:p.V587V	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.998275	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	80132505	12A2p6	cell line	sgMsh2	80132505	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	225	0	0	NA	exonic	Atad5	nonsynonymous SNV	Atad5:NM_001029856:exon21:c.A4442G:p.Q1481R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	0.827176859	1	0.6820034	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	80323373	12A2p6	cell line	sgMsh2	80323373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	50	0	0	NA	exonic	Rhbdl3	synonymous SNV	Rhbdl3:NM_139228:exon4:c.T309C:p.R103R	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	1	1	1	0.9738829	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	80676862	12A2p6	cell line	sgMsh2	80676862	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	160	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon7:c.T791G:p.I264S	11qB5	chr11-69590981-82929860	4	4	0	0.9	4.068082914	NA	2	1	1	0.9997412	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	83421910	12A2p6	cell line	sgMsh2	83421910	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	41	0	0	NA	exonic	Gas2l2	nonsynonymous SNV	Gas2l2:NM_001013759:exon6:c.T2575A:p.W859R	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9622644	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	84103115	12A2p6	cell line	sgMsh2	84103115	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	297	0	0	NA	exonic	Tada2a	nonsynonymous SNV	Tada2a:NM_172562:exon8:c.A542T:p.N181I	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9999139	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	84249560	12A2p6	cell line	sgMsh2	84249560	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	184	0	0	NA	exonic	Acaca	nonsynonymous SNV	Acaca:NM_133360:exon13:c.T1859C:p.V620A	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.9192262	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	84988413	12A2p6	cell line	sgMsh2	84988413	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	368	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon32:c.A4469C:p.N1490T	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	4.10E-08	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	85039230	12A2p6	cell line	sgMsh2	85039230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	236	0	0	NA	exonic	Usp32	nonsynonymous SNV	Usp32:NM_001029934:exon15:c.T1720C:p.Y574H	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999895	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	85559146	12A2p6	cell line	sgMsh2	85559146	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	96	0	0	NA	exonic	Bcas3	nonsynonymous SNV	"Bcas3:NM_001166643:exon19:c.G2004T:p.Q668H,Bcas3:NM_001166642:exon20:c.G2004T:p.Q668H,Bcas3:NM_138681:exon21:c.G2049T:p.Q683H"	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9961633	AGT	nonsynonymous	GCAGT	10	GCAGTGCAGT	NA
M8_p20	chr11	86061519	12A2p6	cell line	sgMsh2	86061519	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	255	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3435C:p.E1145D	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.800056306	2	0.7608578	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	86061721	12A2p6	cell line	sgMsh2	86061721	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	134	0	0	NA	exonic	Brip1	nonsynonymous SNV	Brip1:NM_178309:exon20:c.A3233T:p.E1078V	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992253	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	86255475	12A2p6	cell line	sgMsh2	86255475	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	253	0	0	NA	exonic	Ints2	synonymous SNV	"Ints2:NM_001363130:exon2:c.T366C:p.L122L,Ints2:NM_001363129:exon3:c.T306C:p.L102L,Ints2:NM_027421:exon3:c.T306C:p.L102L"	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999548	CAA	synonymous	CCT	8	CCTCCTCC	NA
M8_p20	chr11	86516907	12A2p6	cell line	sgMsh2	86516907	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	95	0	0	NA	exonic	Rps6kb1	synonymous SNV	Rps6kb1:NM_028259:exon9:c.G810A:p.V270V	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	CCA	synonymous	NA	NA	NA	NA
M8_p20	chr11	86552821	12A2p6	cell line	sgMsh2	86552821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	231	0	0	NA	exonic	Tubd1	synonymous SNV	"Tubd1:NM_001199045:exon4:c.T354C:p.S118S,Tubd1:NM_001199046:exon4:c.T354C:p.S118S,Tubd1:NM_001199047:exon4:c.T354C:p.S118S,Tubd1:NM_019756:exon4:c.T354C:p.S118S"	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9704643	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr11	87035223	12A2p6	cell line	sgMsh2	87035223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	103	0	0	NA	exonic	Gdpd1	nonsynonymous SNV	Gdpd1:NM_025638:exon10:c.A895G:p.T299A	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9971414	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	87085502	12A2p6	cell line	sgMsh2	87085502	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	116	0	0	NA	exonic	Smg8	nonsynonymous SNV	Smg8:NM_024262:exon1:c.G1252A:p.V418M	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9983461	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	87766375	12A2p6	cell line	sgMsh2	87766375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	32	0	0	NA	exonic	Tspoap1	nonsynonymous SNV	Tspoap1:NM_172449:exon9:c.G1192A:p.E398K	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	9.90E-05	GGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	89042241	12A2p6	cell line	sgMsh2	89042241	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	169	0	0	NA	exonic	Dgke	nonsynonymous SNV	"Dgke:NM_001362845:exon9:c.A1324G:p.I442V,Dgke:NM_019505:exon9:c.A1324G:p.I442V"	11qC	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998229	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	94427469	12A2p6	cell line	sgMsh2	94427469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	138	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177888:exon22:c.A4268G:p.D1423G,Cacna1g:NM_001177890:exon22:c.A4217G:p.D1406G,Cacna1g:NM_009783:exon23:c.A4337G:p.D1446G"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993455	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	94429127	12A2p6	cell line	sgMsh2	94429127	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	71	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177888:exon21:c.T4153G:p.S1385A,Cacna1g:NM_001177890:exon21:c.T4102G:p.S1368A,Cacna1g:NM_009783:exon22:c.T4222G:p.S1408A"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9890639	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	94443262	12A2p6	cell line	sgMsh2	94443262	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	91	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon11:c.T2552C:p.L851P,Cacna1g:NM_001177888:exon11:c.T2552C:p.L851P,Cacna1g:NM_001177890:exon11:c.T2501C:p.L834P,Cacna1g:NM_009783:exon11:c.T2552C:p.L851P"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9841982	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	94650042	12A2p6	cell line	sgMsh2	94650042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	100	0	0	NA	exonic	Eme1	nonsynonymous SNV	"Eme1:NM_001379688:exon3:c.T869C:p.I290T,Eme1:NM_177752:exon3:c.T869C:p.I290T"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	95969851	12A2p6	cell line	sgMsh2	95969851	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	123	0	0	NA	exonic	Igf2bp1	nonsynonymous SNV	Igf2bp1:NM_009951:exon9:c.A1075C:p.S359R	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.9959009	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	97034963	12A2p6	cell line	sgMsh2	97034963	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	69	0	0	NA	exonic	Lrrc46	synonymous SNV	Lrrc46:NM_027026:exon8:c.A672G:p.A224A	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	97771651	12A2p6	cell line	sgMsh2	97771651	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	140	0	0	NA	exonic	1700001P01Rik	nonsynonymous SNV	1700001P01Rik:NM_028156:exon3:c.T394C:p.Y132H	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993984	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	97836134	12A2p6	cell line	sgMsh2	97836134	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	227	0	0	NA	exonic	Lasp1	synonymous SNV	Lasp1:NM_010688:exon7:c.T681C:p.D227D	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999847	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr11	97994461	12A2p6	cell line	sgMsh2	97994461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	88	0	0	NA	exonic	Arl5c	synonymous SNV	Arl5c:NM_207231:exon3:c.C132A:p.T44T	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	9.30E-06	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr11	98043773	12A2p6	cell line	sgMsh2	98043773	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	54	0	0	NA	exonic	Stac2	nonsynonymous SNV	Stac2:NM_146028:exon2:c.A104G:p.K35R	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	98152811	12A2p6	cell line	sgMsh2	98152811	A	-	Deletion	Strelka2;Vardict	2	0.2745	51	0	0	NA	exonic	Med1	frameshift deletion	Med1:NM_001361950:exon18:c.1793delT:p.F598Sfs*3	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	19	AAAAAAAAGAAAAAAAAAA	-1
M8_p20	chr11	98710832	12A2p6	cell line	sgMsh2	98710832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	134	0	0	NA	exonic	Med24	synonymous SNV	"Med24:NM_001361995:exon16:c.T1465C:p.L489L,Med24:NM_001378927:exon16:c.T1465C:p.L489L,Med24:NM_011869:exon16:c.T1465C:p.L489L,Med24:NM_001361993:exon17:c.T1522C:p.L508L,Med24:NM_001361994:exon17:c.T1522C:p.L508L,Med24:NM_001378926:exon17:c.T1522C:p.L508L"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9990569	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr11	98846183	12A2p6	cell line	sgMsh2	98846183	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	190	0	0	NA	exonic	Rapgefl1	synonymous SNV	Rapgefl1:NM_001080925:exon6:c.A1008G:p.A336A	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9977166	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr11	98892314	12A2p6	cell line	sgMsh2	98892314	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.372	44	0	0	NA	exonic	Wipf2	frameshift deletion	Wipf2:NM_197940:exon5:c.565delC:p.T191Pfs*39	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr11	99009888	12A2p6	cell line	sgMsh2	99009888	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	160	0	0	NA	exonic	Top2a	frameshift deletion	Top2a:NM_011623:exon15:c.1745delA:p.N582Ifs*4	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr11	99280234	12A2p6	cell line	sgMsh2	99280234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	297	0	0	NA	exonic	Krt24	nonsynonymous SNV	Krt24:NM_029393:exon8:c.T1517C:p.I506T	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999992	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	99815369	12A2p6	cell line	sgMsh2	99815369	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.286	112	0	0	NA	exonic	Gm11564	synonymous SNV	Gm11564:NM_001100614:exon1:c.T234C:p.S78S	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr11	100550280	12A2p6	cell line	sgMsh2	100550280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	105	0	0	NA	exonic	Ttc25	synonymous SNV	"Ttc25:NM_001363174:exon3:c.G336A:p.R112R,Ttc25:NM_028918:exon3:c.G336A:p.R112R"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	0.6428668	GGG	synonymous	NA	NA	NA	NA
M8_p20	chr11	101083406	12A2p6	cell line	sgMsh2	101083406	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	99	0	0	NA	exonic	Coasy	nonsynonymous SNV	Coasy:NM_001305982:exon2:c.G397A:p.E133K	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.960229	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	101092454	12A2p6	cell line	sgMsh2	101092454	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	0	0	NA	exonic	Psmc3ip	nonsynonymous SNV	Psmc3ip:NM_008949:exon8:c.G600T:p.E200D	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9817856	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	101569690	12A2p6	cell line	sgMsh2	101569690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	103	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon14:c.A1429G:p.I477V,Nbr1:NM_001252222:exon14:c.A1429G:p.I477V,Nbr1:NM_001252223:exon14:c.A1429G:p.I477V,Nbr1:NM_008676:exon14:c.A1429G:p.I477V"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9962442	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	102061618	12A2p6	cell line	sgMsh2	102061618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	25	0	0	NA	exonic	Mpp2	nonsynonymous SNV	"Mpp2:NM_001356324:exon9:c.C1079T:p.A360V,Mpp2:NM_016695:exon10:c.C1028T:p.A343V"	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9281943	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	102480410	12A2p6	cell line	sgMsh2	102480410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	129	0	0	NA	exonic	Gpatch8	synonymous SNV	Gpatch8:NM_001159492:exon8:c.T2301C:p.G767G	11qD	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990436	CAC	synonymous	C	5	CCCCC	NA
M8_p20	chr11	102886168	12A2p6	cell line	sgMsh2	102886168	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	exonic	Fam187a	nonsynonymous SNV	Fam187a:NM_025766:exon1:c.G797T:p.S266I	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	103198542	12A2p6	cell line	sgMsh2	103198542	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	90	0	0	NA	exonic	Fmnl1	nonsynonymous SNV	Fmnl1:NM_001077698:exon26:c.C3241A:p.P1081T	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9950637	CCC	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr11	103334054	12A2p6	cell line	sgMsh2	103334054	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	57	0	0	NA	exonic	Arhgap27	synonymous SNV	"Arhgap27:NM_133715:exon11:c.A1374G:p.R458R,Arhgap27:NM_001205236:exon13:c.A1971G:p.R657R"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	9.96E-07	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr11	103541773	12A2p6	cell line	sgMsh2	103541773	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	68	0	0	NA	exonic	Gm884	synonymous SNV	Gm884:NM_001033434:exon9:c.A4041T:p.R1347R	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.800056306	1	0.6894289	TTC	synonymous	NA	NA	NA	NA
M8_p20	chr11	103636841	12A2p6	cell line	sgMsh2	103636841	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	76	0	0	NA	exonic	Lyzl6	nonsynonymous SNV	"Lyzl6:NM_001356472:exon2:c.G56A:p.G19D,Lyzl6:NM_027083:exon2:c.G56A:p.G19D"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9911251	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	105985576	12A2p6	cell line	sgMsh2	105985576	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	114	0	0	NA	exonic	Ace	nonsynonymous SNV	"Ace:NM_009598:exon10:c.A1415G:p.Y472C,Ace:NM_001281819:exon21:c.A3155G:p.Y1052C,Ace:NM_207624:exon21:c.A3155G:p.Y1052C"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9982008	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	106261546	12A2p6	cell line	sgMsh2	106261546	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	272	0	0	NA	exonic	Psmc5	nonsynonymous SNV	Psmc5:NM_008950:exon5:c.A388C:p.K130Q	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999977	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	106816804	12A2p6	cell line	sgMsh2	106816804	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	120	0	0	NA	exonic	Cep95	nonsynonymous SNV	"Cep95:NM_001166685:exon16:c.T1943C:p.M648T,Cep95:NM_177088:exon17:c.T2072C:p.M691T"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9986025	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	106991295	12A2p6	cell line	sgMsh2	106991295	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	139	0	0	NA	exonic	Kpna2	nonsynonymous SNV	Kpna2:NM_010655:exon7:c.A704C:p.N235T	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993725	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	107052877	12A2p6	cell line	sgMsh2	107052877	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	35	0	0	NA	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon23:c.C7433T:p.A2478V,Bptf:NM_176850:exon23:c.C7832T:p.A2611V"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9518871	AGC	nonsynonymous	AGCAG	12	AGCAGAGCAGAG	NA
M8_p20	chr11	107663635	12A2p6	cell line	sgMsh2	107663635	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	223	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon26:c.T3661G:p.F1221V,Helz:NM_001368755:exon27:c.T3658G:p.F1220V"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999818	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	107670145	12A2p6	cell line	sgMsh2	107670145	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	97	0	0	NA	exonic	Helz	synonymous SNV	"Helz:NM_198298:exon28:c.T4032C:p.N1344N,Helz:NM_001368755:exon29:c.T4029C:p.N1343N"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9963212	ATA	synonymous	ATAA	8	ATAAATAA	NA
M8_p20	chr11	107672695	12A2p6	cell line	sgMsh2	107672695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	158	0	0	NA	exonic	Helz	nonsynonymous SNV	"Helz:NM_198298:exon30:c.T4960C:p.F1654L,Helz:NM_001368755:exon31:c.T4957C:p.F1653L"	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	110219643	12A2p6	cell line	sgMsh2	110219643	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.25	318	0	0	NA	exonic	Abca6	nonsynonymous SNV	Abca6:NM_147218:exon13:c.T1679C:p.V560A	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999997	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	110296589	12A2p6	cell line	sgMsh2	110296589	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.44	20	0	0	NA	exonic	Abca5	frameshift deletion	Abca5:NM_147219:exon20:c.2643delT:p.L882Sfs*20	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8_p20	chr11	110310288	12A2p6	cell line	sgMsh2	110310288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	74	0	0	NA	exonic	Abca5	nonsynonymous SNV	Abca5:NM_147219:exon10:c.A1285G:p.R429G	11qE1	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9903514	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	113943235	12A2p6	cell line	sgMsh2	113943235	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	78	0	0	NA	exonic	Sdk2	synonymous SNV	Sdk2:NM_172800:exon2:c.A120G:p.Q40Q	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9918373	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	114987405	12A2p6	cell line	sgMsh2	114987405	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	354	0	0	NA	exonic	Cd300ld	nonsynonymous SNV	Cd300ld:NM_145437:exon2:c.A280C:p.T94P	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	115606036	12A2p6	cell line	sgMsh2	115606036	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	122	0	0	NA	exonic	Mrps7	nonsynonymous SNV	Mrps7:NM_025305:exon4:c.A406G:p.T136A	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9987155	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	115791928	12A2p6	cell line	sgMsh2	115791928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	110	0	0	NA	exonic	Tmem94	nonsynonymous SNV	Tmem94:NM_028014:exon15:c.T1790C:p.L597P	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9978708	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	115850642	12A2p6	cell line	sgMsh2	115850642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	29	0	0	NA	exonic	Llgl2	synonymous SNV	"Llgl2:NM_001252532:exon15:c.T1597C:p.L533L,Llgl2:NM_145438:exon15:c.T1597C:p.L533L"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9387841	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr11	115894538	12A2p6	cell line	sgMsh2	115894538	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	43	0	0	NA	exonic	Recql5	nonsynonymous SNV	Recql5:NM_130454:exon15:c.C2131A:p.P711T	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9652154	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116007787	12A2p6	cell line	sgMsh2	116007787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	145	0	0	NA	exonic	Itgb4	nonsynonymous SNV	"Itgb4:NM_133663:exon38:c.C5041T:p.L1681F,Itgb4:NM_001005608:exon39:c.C5191T:p.L1731F"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995128	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116047690	12A2p6	cell line	sgMsh2	116047690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	129	0	0	NA	exonic	Unk	nonsynonymous SNV	"Unk:NM_001286006:exon2:c.T118C:p.F40L,Unk:NM_172569:exon2:c.T118C:p.F40L"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9990086	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116135250	12A2p6	cell line	sgMsh2	116135250	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	53	0	0	NA	exonic	Mrpl38	nonsynonymous SNV	Mrpl38:NM_024177:exon3:c.A323C:p.H108P	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.714174556	2	0.007983811	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116283243	12A2p6	cell line	sgMsh2	116283243	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	232	0	0	NA	exonic	Galr2	nonsynonymous SNV	Galr2:NM_010254:exon2:c.T698A:p.V233E	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.881417965	1	0.9829256	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116293991	12A2p6	cell line	sgMsh2	116293991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	41	0	0	NA	exonic	Exoc7	synonymous SNV	"Exoc7:NM_001162872:exon11:c.T1317C:p.G439G,Exoc7:NM_001362839:exon11:c.T1317C:p.G439G,Exoc7:NM_001347636:exon12:c.T1410C:p.G470G,Exoc7:NM_001378961:exon12:c.T1386C:p.G462G,Exoc7:NM_016857:exon12:c.T1410C:p.G470G,Exoc7:NM_001362838:exon13:c.T1479C:p.G493G,Exoc7:NM_001378960:exon13:c.T1479C:p.G493G"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9622644	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr11	116438180	12A2p6	cell line	sgMsh2	116438180	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.444	10	0	0	NA	exonic	Ubald2	nonsynonymous SNV	Ubald2:NM_176902:exon3:c.C370T:p.P124S	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.8687136	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116446851	12A2p6	cell line	sgMsh2	116446851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	67	0	0	NA	exonic	Qrich2	nonsynonymous SNV	Qrich2:NM_001033267:exon6:c.T575C:p.M192T	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9870797	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116657552	12A2p6	cell line	sgMsh2	116657552	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	93	0	0	NA	exonic	Prcd	nonsynonymous SNV	Prcd:NM_001163318:exon2:c.T86A:p.V29E	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	116923396	12A2p6	cell line	sgMsh2	116923396	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	85	0	0	NA	exonic	Mgat5b	nonsynonymous SNV	Mgat5b:NM_172948:exon2:c.G125A:p.G42E	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	0.715842	GGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	117141495	12A2p6	cell line	sgMsh2	117141495	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	82	0	0	NA	exonic	Sec14l1	synonymous SNV	"Sec14l1:NM_001363165:exon2:c.T39C:p.S13S,Sec14l1:NM_001166506:exon3:c.T141C:p.S47S,Sec14l1:NM_001166507:exon3:c.T141C:p.S47S,Sec14l1:NM_028777:exon3:c.T141C:p.S47S"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9930959	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	117772845	12A2p6	cell line	sgMsh2	117772845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	72	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon13:c.A1540G:p.I514V	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9895109	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	117775602	12A2p6	cell line	sgMsh2	117775602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	55	0	0	NA	exonic	Tmc6	nonsynonymous SNV	Tmc6:NM_145439:exon8:c.T875C:p.L292P	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9787452	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	119039182	12A2p6	cell line	sgMsh2	119039182	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	23	0	0	NA	exonic	Cbx8	nonsynonymous SNV	Cbx8:NM_013926:exon5:c.T584G:p.L195R	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.8968412	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	119081058	12A2p6	cell line	sgMsh2	119081058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.625	20	0	0	NA	exonic	Cbx4	nonsynonymous SNV	Cbx4:NM_007625:exon5:c.C1490T:p.A497V	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	2	1	1	0.9123907	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	119437033	12A2p6	cell line	sgMsh2	119437033	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.189	55	0	0	NA	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5848T:p.I1950F	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.854297412	1	0.8479843	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	120134832	12A2p6	cell line	sgMsh2	120134832	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	207	0	0	NA	exonic	Slc38a10	nonsynonymous SNV	"Slc38a10:NM_001361697:exon6:c.T431C:p.M144T,Slc38a10:NM_001361698:exon6:c.T413C:p.M138T,Slc38a10:NM_001164798:exon7:c.T677C:p.M226T,Slc38a10:NM_001164799:exon7:c.T677C:p.M226T,Slc38a10:NM_001164800:exon7:c.T677C:p.M226T,Slc38a10:NM_001164801:exon7:c.T677C:p.M226T,Slc38a10:NM_001164802:exon7:c.T677C:p.M226T,Slc38a10:NM_001361696:exon7:c.T677C:p.M226T,Slc38a10:NM_001361699:exon7:c.T2C:p.M1T,Slc38a10:NM_024249:exon7:c.T677C:p.M226T"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.72321474	2	0.9921754	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	120287172	12A2p6	cell line	sgMsh2	120287172	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	36	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.A6556G:p.T2186A	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.72321474	1	0.5929756	TAC	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr11	120346700	12A2p6	cell line	sgMsh2	120346700	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	219	0	0	NA	exonic	Actg1	synonymous SNV	"Actg1:NM_009609:exon5:c.A921G:p.P307P,Actg1:NM_001313923:exon6:c.A555G:p.P185P"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999785	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	120362203	12A2p6	cell line	sgMsh2	120362203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	117	0	0	NA	exonic	Fscn2	synonymous SNV	Fscn2:NM_172802:exon1:c.T495C:p.G165G	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9984143	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr11	120471537	12A2p6	cell line	sgMsh2	120471537	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	77	0	0	NA	exonic	Hgs	nonsynonymous SNV	"Hgs:NM_001159328:exon5:c.C349A:p.H117N,Hgs:NM_008244:exon5:c.C349A:p.H117N"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9914886	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	120597669	12A2p6	cell line	sgMsh2	120597669	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	84	0	0	NA	exonic	Alyref	nonsynonymous SNV	Alyref:NM_011568:exon2:c.A332G:p.N111S	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.993651	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	120861211	12A2p6	cell line	sgMsh2	120861211	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	101	0	0	NA	exonic	Ccdc57	nonsynonymous SNV	Ccdc57:NM_027745:exon17:c.A2543G:p.H848R	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9948379	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	120955828	12A2p6	cell line	sgMsh2	120955828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	95	0	0	NA	exonic	Slc16a3	nonsynonymous SNV	"Slc16a3:NM_001038654:exon3:c.T253C:p.F85L,Slc16a3:NM_001038653:exon4:c.T253C:p.F85L,Slc16a3:NM_030696:exon4:c.T253C:p.F85L"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	0.727734832	2	0.000989764	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr11	121217002	12A2p6	cell line	sgMsh2	121217002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	155	0	0	NA	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon5:c.T557C:p.L186P,Hexdc:NM_001001333:exon6:c.T557C:p.L186P"	11qE2	chr11-83340987-121956668	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996804	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	3501702	12A2p6	cell line	sgMsh2	3501702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	161	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3443G:p.H1148R,Asxl2:NM_001270988:exon12:c.A3587G:p.H1196R"	12qA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAT	nonsynonymous	GGCA	8	GGCAGGCA	NA
M8_p20	chr12	3734955	12A2p6	cell line	sgMsh2	3734955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	184	0	0	NA	exonic	Dtnb	nonsynonymous SNV	"Dtnb:NM_001355528:exon11:c.A1096G:p.S366G,Dtnb:NM_001162465:exon12:c.A1186G:p.S396G,Dtnb:NM_001374710:exon12:c.A1186G:p.S396G,Dtnb:NM_007886:exon12:c.A1186G:p.S396G"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.375167647	3	0.9999694	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	4201333	12A2p6	cell line	sgMsh2	4201333	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	43	0	0	NA	exonic	Adcy3	nonsynonymous SNV	"Adcy3:NM_138305:exon10:c.A1954T:p.I652F,Adcy3:NM_001159536:exon11:c.A1954T:p.I652F,Adcy3:NM_001159537:exon11:c.A1954T:p.I652F"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.664453543	2	0.5991644	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	4267831	12A2p6	cell line	sgMsh2	4267831	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	97	0	0	NA	exonic	Ncoa1	nonsynonymous SNV	Ncoa1:NM_010881:exon18:c.A3500G:p.Q1167R	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.42488866	3	0.9549117	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	4636675	12A2p6	cell line	sgMsh2	4636675	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	166	0	0	NA	exonic	Itsn2	nonsynonymous SNV	"Itsn2:NM_001198968:exon14:c.A1626T:p.Q542H,Itsn2:NM_001198969:exon14:c.A1626T:p.Q542H,Itsn2:NM_011365:exon14:c.A1626T:p.Q542H"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.668973635	2	0.9966058	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	4940219	12A2p6	cell line	sgMsh2	4940219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	252	0	0	NA	exonic	Atad2b	synonymous SNV	Atad2b:NM_001362349:exon4:c.T543C:p.S181S	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.890458149	1	0.9924002	GTT	synonymous	TTA	8	TTATTATT	NA
M8_p20	chr12	7983842	12A2p6	cell line	sgMsh2	7983842	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	214	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon6:c.A554G:p.N185S	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.931138978	1	0.9987168	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	8002248	12A2p6	cell line	sgMsh2	8002248	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	148	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon23:c.T3688A:p.L1230I	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.63733299	2	0.9913715	ATT	nonsynonymous	AATT	8	AATTAATT	NA
M8_p20	chr12	8499412	12A2p6	cell line	sgMsh2	8499412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	142	0	0	NA	exonic	Rhob	nonsynonymous SNV	Rhob:NM_007483:exon1:c.A221G:p.Y74C	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.456529305	3	0.9773228	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	8728716	12A2p6	cell line	sgMsh2	8728716	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	167	0	0	NA	exonic	Pum2	synonymous SNV	"Pum2:NM_001160219:exon11:c.A1365C:p.G455G,Pum2:NM_001160220:exon11:c.A1365C:p.G455G,Pum2:NM_001160221:exon11:c.A1365C:p.G455G,Pum2:NM_001160222:exon11:c.A1365C:p.G455G,Pum2:NM_001310519:exon11:c.A1350C:p.G450G,Pum2:NM_030723:exon11:c.A1365C:p.G455G"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.696094187	2	0.9917325	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	8791360	12A2p6	cell line	sgMsh2	8791360	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	53	0	0	NA	exonic	Sdc1	frameshift deletion	Sdc1:NM_011519:exon4:c.700delC:p.P235Rfs*26	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.944699254	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr12	9022868	12A2p6	cell line	sgMsh2	9022868	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	259	0	0	NA	exonic	Wdr35	synonymous SNV	"Wdr35:NM_001159527:exon23:c.T2808C:p.A936A,Wdr35:NM_172470:exon24:c.T2841C:p.A947A"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.438448936	3	0.9999472	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr12	9024291	12A2p6	cell line	sgMsh2	9024291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	192	0	0	NA	exonic	Wdr35	nonsynonymous SNV	"Wdr35:NM_001159527:exon24:c.T2921C:p.M974T,Wdr35:NM_172470:exon25:c.T2954C:p.M985T"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.781975938	2	0.8041527	ATG	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr12	12340718	12A2p6	cell line	sgMsh2	12340718	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	247	0	0	NA	exonic	Cyria	synonymous SNV	"Cyria:NM_001146119:exon3:c.G30T:p.R10R,Cyria:NM_001364432:exon4:c.G30T:p.R10R,Cyria:NM_029758:exon4:c.G30T:p.R10R"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.881417965	1	0.985477	GGG	synonymous	NA	NA	NA	NA
M8_p20	chr12	12372809	12A2p6	cell line	sgMsh2	12372809	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	405	0	0	NA	exonic	Cyria	stoploss	"Cyria:NM_001146119:exon12:c.A971G:p.X324W,Cyria:NM_001364432:exon13:c.A971G:p.X324W,Cyria:NM_029758:exon13:c.A971G:p.X324W"	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.72321474	2	0.9999819	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	13405405	12A2p6	cell line	sgMsh2	13405405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	138	0	0	NA	exonic	Nbas	nonsynonymous SNV	Nbas:NM_027706:exon31:c.G3619A:p.A1207T	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.736775017	2	0.09682478	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	16950664	12A2p6	cell line	sgMsh2	16950664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	185	0	0	NA	exonic	Rock2	nonsynonymous SNV	Rock2:NM_009072:exon7:c.A961G:p.I321V	12qA1.1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	2	1	1	0.9999098	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	24509473	12A2p6	cell line	sgMsh2	24509473	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	470	0	0	NA	exonic	Taf1b	nonsynonymous SNV	Taf1b:NM_020614:exon5:c.T323C:p.F108S	12qA1.3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.687054003	2	3.43E-09	TTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr12	24955384	12A2p6	cell line	sgMsh2	24955384	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	301	0	0	NA	exonic	Mboat2	nonsynonymous SNV	"Mboat2:NM_001083341:exon10:c.T1061C:p.V354A,Mboat2:NM_026037:exon11:c.T1157C:p.V386A"	12qA1.3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.524330687	3	0.9557395	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	31340331	12A2p6	cell line	sgMsh2	31340331	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	203	0	0	NA	exonic	Dld	frameshift deletion	Dld:NM_007861:exon8:c.633delA:p.V212Ffs*11	12qA2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.528850779	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr12	31547124	12A2p6	cell line	sgMsh2	31547124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	225	0	0	NA	exonic	Slc26a4	nonsynonymous SNV	Slc26a4:NM_011867:exon6:c.A743G:p.N248S	12qA2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.632812898	2	0.9981582	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	31708932	12A2p6	cell line	sgMsh2	31708932	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	485	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.T1079C:p.I360T	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.822656767	2	0.6630706	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	31709410	12A2p6	cell line	sgMsh2	31709410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	320	0	0	NA	exonic	Gpr22	nonsynonymous SNV	Gpr22:NM_175191:exon3:c.A601G:p.S201G	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.91305861	1	0.9995398	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	35112454	12A2p6	cell line	sgMsh2	35112454	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	638	0	0	NA	exonic	Snx13	nonsynonymous SNV	Snx13:NM_001014973:exon17:c.G1658T:p.S553I	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.682533911	2	1.02E-09	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	37581501	12A2p6	cell line	sgMsh2	37581501	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	285	0	0	NA	exonic	Agmo	nonsynonymous SNV	Agmo:NM_178767:exon13:c.T1321G:p.S441A	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.578571792	2	0.9134286	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	38173837	12A2p6	cell line	sgMsh2	38173837	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	270	0	0	NA	exonic	Dgkb	frameshift deletion	"Dgkb:NM_001361688:exon14:c.1254delT:p.L419Cfs*12,Dgkb:NM_178681:exon14:c.1254delT:p.L419Cfs*12,Dgkb:NM_001361686:exon15:c.1275delT:p.L426Cfs*12"	12qA3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.831696951	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8_p20	chr12	41453142	12A2p6	cell line	sgMsh2	41453142	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	244	0	0	NA	exonic	Lrrn3	nonsynonymous SNV	"Lrrn3:NM_001271709:exon2:c.A1175G:p.D392G,Lrrn3:NM_010733:exon2:c.A1175G:p.D392G,Lrrn3:NM_001271708:exon3:c.A1175G:p.D392G"	12qB1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.678013819	2	0.9998304	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	46816887	12A2p6	cell line	sgMsh2	46816887	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	219	0	0	NA	exonic	Nova1	synonymous SNV	"Nova1:NM_001364634:exon2:c.A279G:p.P93P,Nova1:NM_001364635:exon2:c.A276G:p.P92P,Nova1:NM_001364639:exon2:c.A279G:p.P93P,Nova1:NM_021361:exon2:c.A279G:p.P93P"	12qB3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.5740517	2	8.71E-07	CTG	synonymous	ACCT	8	ACCTACCT	NA
M8_p20	chr12	51355927	12A2p6	cell line	sgMsh2	51355927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	183	0	0	NA	exonic	G2e3	nonsynonymous SNV	"G2e3:NM_001015099:exon5:c.T284C:p.V95A,G2e3:NM_001167963:exon5:c.T284C:p.V95A,G2e3:NM_001167964:exon5:c.T284C:p.V95A"	12qB3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.5740517	2	0.8642954	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	51447623	12A2p6	cell line	sgMsh2	51447623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	255	0	0	NA	exonic	Scfd1	nonsynonymous SNV	Scfd1:NM_029825:exon24:c.A1879G:p.T627A	12qB3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.72321474	2	0.9981964	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	51602660	12A2p6	cell line	sgMsh2	51602660	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	271	0	0	NA	exonic	Coch	nonsynonymous SNV	"Coch:NM_007728:exon9:c.G753T:p.K251N,Coch:NM_001198835:exon10:c.G753T:p.K251N"	12qB3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.763895569	2	0.9802535	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	51794571	12A2p6	cell line	sgMsh2	51794571	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	213	0	0	NA	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon12:c.G1775A:p.G592D	12qB3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.678013819	2	0.9993878	GCC	nonsynonymous	CAT	13	CATCATCATCATC	NA
M8_p20	chr12	51999859	12A2p6	cell line	sgMsh2	51999859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	75	0	0	NA	exonic	Dtd2	nonsynonymous SNV	"Dtd2:NM_001347404:exon3:c.A196C:p.N66H,Dtd2:NM_029545:exon3:c.A196C:p.N66H"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.885938057	1	0.9184172	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	53025765	12A2p6	cell line	sgMsh2	53025765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	268	0	0	NA	exonic	Akap6	nonsynonymous SNV	Akap6:NM_198111:exon9:c.T2915C:p.L972P	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.687054003	2	0.9998997	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	54685943	12A2p6	cell line	sgMsh2	54685943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.421	152	0	0	NA	exonic	Eapp	frameshift deletion	"Eapp:NM_001331162:exon4:c.381delC:p.H127Qfs*41,Eapp:NM_025456:exon4:c.381delC:p.H127Qfs*51"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	2	1	NA	NA	TGT	frameshift	NA	NA	NA	-1
M8_p20	chr12	55061106	12A2p6	cell line	sgMsh2	55061106	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	321	0	0	NA	exonic	2700097O09Rik	stopgain	2700097O09Rik:NM_028314:exon3:c.307delA:p.M103fs*0	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.894978241	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
M8_p20	chr12	55707969	12A2p6	cell line	sgMsh2	55707969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	181	0	0	NA	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001112714:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_019994:exon24:c.T3536C:p.L1179S,Ralgapa1:NM_001286263:exon25:c.T3677C:p.L1226S,Ralgapa1:NM_001368814:exon25:c.T5045C:p.L1682S"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.836217043	1	0.7924601	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	59018014	12A2p6	cell line	sgMsh2	59018014	A	-	Deletion	Mutect2;Vardict	2	0.164	73	0	0	NA	exonic	Gemin2	frameshift deletion	Gemin2:NM_025656:exon5:c.375delA:p.K126Nfs*46	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.741295109	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr12	59206057	12A2p6	cell line	sgMsh2	59206057	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	140	0	0	NA	exonic	Fbxo33	nonsynonymous SNV	Fbxo33:NM_001033156:exon2:c.A655T:p.S219C	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.42488866	3	0.9943409	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	61840469	12A2p6	cell line	sgMsh2	61840469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	155	0	0	NA	exonic	Lrfn5	nonsynonymous SNV	"Lrfn5:NM_001310586:exon3:c.A1042G:p.T348A,Lrfn5:NM_178714:exon3:c.A1042G:p.T348A"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.795536214	2	9.41E-07	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	61843453	12A2p6	cell line	sgMsh2	61843453	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	234	0	0	NA	exonic	Lrfn5	synonymous SNV	"Lrfn5:NM_001310586:exon4:c.T1527A:p.T509T,Lrfn5:NM_178714:exon4:c.T1527A:p.T509T"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.63733299	2	0.9989184	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr12	64957701	12A2p6	cell line	sgMsh2	64957701	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	278	0	0	NA	exonic	Klhl28	synonymous SNV	Klhl28:NM_025707:exon2:c.T37C:p.L13L	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.867857688	1	0.9724737	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	65043265	12A2p6	cell line	sgMsh2	65043265	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	391	0	0	NA	exonic	Prpf39	nonsynonymous SNV	Prpf39:NM_177806:exon3:c.A352G:p.K118E	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.885938057	1	0.9980949	CAA	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr12	65056424	12A2p6	cell line	sgMsh2	65056424	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.19	162	0	0	NA	exonic	Prpf39	frameshift deletion	"Prpf39:NM_177806:exon10:c.1471delT:p.Y492Mfs*4,Prpf39:NM_001374212:exon11:c.1114delT:p.Y373Mfs*4,Prpf39:NM_001374213:exon12:c.1114delT:p.Y373Mfs*4"	12qC1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8_p20	chr12	66283963	12A2p6	cell line	sgMsh2	66283963	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	189	0	0	NA	exonic	Rpl10l	nonsynonymous SNV	Rpl10l:NM_001162933:exon1:c.G395A:p.G132D	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.537890963	3	0.6062486	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	66284012	12A2p6	cell line	sgMsh2	66284012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	179	0	0	NA	exonic	Rpl10l	stopgain	Rpl10l:NM_001162933:exon1:c.C346T:p.R116X	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9998839	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	66689479	12A2p6	cell line	sgMsh2	66689479	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	276	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon6:c.C767A:p.P256H,Mdga2:NM_207010:exon6:c.C767A:p.P256H"	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.777455846	2	0.9534403	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	69190025	12A2p6	cell line	sgMsh2	69190025	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	488	0	0	NA	exonic	Dnaaf2	frameshift deletion	Dnaaf2:NM_027269:exon3:c.2308delA:p.T770Lfs*11	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.899498333	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8_p20	chr12	69373288	12A2p6	cell line	sgMsh2	69373288	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	90	0	0	NA	exonic	Arf6	synonymous SNV	Arf6:NM_007481:exon2:c.G495C:p.G165G	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.741295109	2	0.000756615	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr12	69825768	12A2p6	cell line	sgMsh2	69825768	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.282	58	0	0	NA	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon19:c.G1456T:p.G486C	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	2	1	1	0.9812248	CCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	70978787	12A2p6	cell line	sgMsh2	70978787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	333	0	0	NA	exonic	Psma3	nonsynonymous SNV	Psma3:NM_011184:exon2:c.T76C:p.Y26H	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.772935754	2	0.9872699	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	70978813	12A2p6	cell line	sgMsh2	70978813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	273	0	0	NA	exonic	Psma3	synonymous SNV	Psma3:NM_011184:exon2:c.T102C:p.S34S	12qC2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.763895569	2	0.9810123	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr12	72556654	12A2p6	cell line	sgMsh2	72556654	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	207	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon5:c.T1465A:p.S489T	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.804576399	2	0.6008502	CTC	nonsynonymous	TGTC	9	TGTCTGTCT	NA
M8_p20	chr12	72574334	12A2p6	cell line	sgMsh2	72574334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	285	0	0	NA	exonic	Pcnx4	nonsynonymous SNV	Pcnx4:NM_026327:exon9:c.A2927G:p.Y976C	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.78649603	2	0.9233444	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	73545433	12A2p6	cell line	sgMsh2	73545433	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	167	0	0	NA	exonic	Tmem30b	nonsynonymous SNV	Tmem30b:NM_178715:exon1:c.A907G:p.I303V	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.78649603	2	7.72E-07	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	73759635	12A2p6	cell line	sgMsh2	73759635	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	332	0	0	NA	exonic	Prkch	nonsynonymous SNV	"Prkch:NM_008856:exon12:c.C1655T:p.A552V,Prkch:NM_001313977:exon13:c.C1316T:p.A439V"	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.763895569	2	0.9940807	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	75716177	12A2p6	cell line	sgMsh2	75716177	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	275	0	0	NA	exonic	Sgpp1	nonsynonymous SNV	Sgpp1:NM_030750:exon3:c.G1229T:p.G410V	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.890458149	1	0.9943973	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	75893095	12A2p6	cell line	sgMsh2	75893095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	446	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon9:c.T806C:p.V269A	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.555971332	3	0.6587464	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	75967130	12A2p6	cell line	sgMsh2	75967130	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	140	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon48:c.9094delT:p.L3033fs*0	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.646373174	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr12	76052166	12A2p6	cell line	sgMsh2	76052166	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	177	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon86:c.A15818G:p.D5273G	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9998736	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	76098064	12A2p6	cell line	sgMsh2	76098064	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	70	0	0	NA	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon105:c.A19003C:p.T6335P	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.678013819	2	0.8035751	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	76577852	12A2p6	cell line	sgMsh2	76577852	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	128	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.T3470G:p.L1157R	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.795536214	1	6.13E-06	CTC	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr12	79261656	12A2p6	cell line	sgMsh2	79261656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	197	0	0	NA	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon26:c.G5113A:p.D1705N	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.705134372	2	0.9957965	TCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	79261698	12A2p6	cell line	sgMsh2	79261698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	123	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon26:c.C5071T:p.L1691L	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.546931147	2	0.6662067	AGA	synonymous	NA	NA	NA	NA
M8_p20	chr12	79276313	12A2p6	cell line	sgMsh2	79276313	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	91	0	0	NA	exonic	Zfyve26	synonymous SNV	Zfyve26:NM_001008550:exon15:c.T2658C:p.G886G	12qC3	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.800056306	1	0.6359241	TAC	synonymous	C	5	CCCCC	NA
M8_p20	chr12	81216795	12A2p6	cell line	sgMsh2	81216795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	368	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	Slc8a3:NM_080440:exon3:c.A1817G:p.K606R	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.718694648	2	0.9999637	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	81314369	12A2p6	cell line	sgMsh2	81314369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	294	0	0	NA	exonic	Slc8a3	nonsynonymous SNV	"Slc8a3:NM_001167920:exon2:c.A1675G:p.R559G,Slc8a3:NM_080440:exon2:c.A1675G:p.R559G"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.899498333	1	0.9978328	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	81419746	12A2p6	cell line	sgMsh2	81419746	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	314	0	0	NA	exonic	Adam4	synonymous SNV	Adam4:NM_009620:exon1:c.T2100C:p.T700T	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.84977732	1	0.9118212	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	81958696	12A2p6	cell line	sgMsh2	81958696	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	258	0	0	NA	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon14:c.T3206C:p.I1069T	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.804576399	2	0.7071793	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	82387606	12A2p6	cell line	sgMsh2	82387606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	188	0	0	NA	exonic	Sipa1l1	nonsynonymous SNV	"Sipa1l1:NM_172579:exon7:c.G2149A:p.E717K,Sipa1l1:NM_001167983:exon10:c.G2149A:p.E717K"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.791016122	2	0.7117925	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	83069544	12A2p6	cell line	sgMsh2	83069544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	329	0	0	NA	exonic	Rgs6	nonsynonymous SNV	"Rgs6:NM_001282061:exon11:c.T743C:p.I248T,Rgs6:NM_001310478:exon11:c.T743C:p.I248T,Rgs6:NM_015812:exon11:c.T743C:p.I248T"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.492690042	3	0.999091	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	84106461	12A2p6	cell line	sgMsh2	84106461	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	257	0	0	NA	exonic	Acot6	nonsynonymous SNV	Acot6:NM_172580:exon2:c.G476T:p.G159V	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.763895569	2	0.9740456	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	84174071	12A2p6	cell line	sgMsh2	84174071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	77	0	0	NA	exonic	Mideas	synonymous SNV	"Mideas:NM_001163501:exon2:c.A108G:p.P36P,Mideas:NM_001163502:exon2:c.A108G:p.P36P"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.619252621	2	0.905282	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr12	85266943	12A2p6	cell line	sgMsh2	85266943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	294	0	0	NA	exonic	Mlh3	nonsynonymous SNV	"Mlh3:NM_001304475:exon2:c.T2468C:p.I823T,Mlh3:NM_175337:exon2:c.T2468C:p.I823T"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.628292806	2	0.9993032	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	85269374	12A2p6	cell line	sgMsh2	85269374	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	461	0	0	NA	exonic	Mlh3	synonymous SNV	"Mlh3:NM_001304475:exon2:c.T37C:p.L13L,Mlh3:NM_175337:exon2:c.T37C:p.L13L"	12qD1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.759375477	2	0.9997387	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr12	85933463	12A2p6	cell line	sgMsh2	85933463	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	78	0	0	NA	exonic	Ttll5	synonymous SNV	"Ttll5:NM_001364628:exon26:c.T2304C:p.A768A,Ttll5:NM_001081423:exon27:c.T2820C:p.A940A,Ttll5:NM_001347395:exon27:c.T2820C:p.A940A,Ttll5:NM_001364624:exon27:c.T2820C:p.A940A,Ttll5:NM_001364625:exon27:c.T2820C:p.A940A,Ttll5:NM_001364626:exon27:c.T2820C:p.A940A,Ttll5:NM_001364627:exon27:c.T2526C:p.A842A,Ttll5:NM_001364630:exon27:c.T1053C:p.A351A"	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.813616583	1	8.93E-05	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr12	86883286	12A2p6	cell line	sgMsh2	86883286	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	73	0	0	NA	exonic	Irf2bpl	synonymous SNV	Irf2bpl:NM_145836:exon1:c.G612T:p.S204S	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.881417965	1	0.9096876	CCG	synonymous	NA	NA	NA	NA
M8_p20	chr12	87244878	12A2p6	cell line	sgMsh2	87244878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	71	0	0	NA	exonic	Vipas39	nonsynonymous SNV	"Vipas39:NM_001142581:exon14:c.A988G:p.T330A,Vipas39:NM_134044:exon14:c.A988G:p.T330A,Vipas39:NM_001142580:exon15:c.A1045G:p.T349A"	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.736775017	2	0.6012054	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	87285186	12A2p6	cell line	sgMsh2	87285186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	87	0	0	NA	exonic	Ism2	synonymous SNV	Ism2:NM_001290302:exon3:c.A576G:p.E192E	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.72321474	2	0.7601416	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr12	87356619	12A2p6	cell line	sgMsh2	87356619	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	309	0	0	NA	exonic	Sptlc2	synonymous SNV	Sptlc2:NM_011479:exon3:c.T405C:p.P135P	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.772935754	2	0.9807081	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	87438541	12A2p6	cell line	sgMsh2	87438541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	105	0	0	NA	exonic	Alkbh1	nonsynonymous SNV	Alkbh1:NM_001102565:exon3:c.A311G:p.N104S	12qD2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.904018425	1	0.9639284	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	98256904	12A2p6	cell line	sgMsh2	98256904	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	55	0	0	NA	exonic	Galc	nonsynonymous SNV	Galc:NM_008079:exon2:c.T232C:p.Y78H	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9787452	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	98275382	12A2p6	cell line	sgMsh2	98275382	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	283	0	0	NA	exonic	Gpr65	nonsynonymous SNV	Gpr65:NM_008152:exon2:c.T293C:p.M98T	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	1	0.949217	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	98669251	12A2p6	cell line	sgMsh2	98669251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	168	0	0	NA	exonic	Spata7	synonymous SNV	"Spata7:NM_001289573:exon10:c.T828C:p.D276D,Spata7:NM_001289572:exon11:c.T1233C:p.D411D,Spata7:NM_001289574:exon12:c.T1011C:p.D337D,Spata7:NM_178914:exon12:c.T1329C:p.D443D"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.5740517	2	0.8630044	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr12	98689429	12A2p6	cell line	sgMsh2	98689429	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	327	0	0	NA	exonic	Ptpn21	synonymous SNV	"Ptpn21:NM_001146199:exon13:c.C1278A:p.V426V,Ptpn21:NM_011877:exon13:c.C1278A:p.V426V"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.70061428	2	0.9999715	TGA	synonymous	NA	NA	NA	NA
M8_p20	chr12	98798930	12A2p6	cell line	sgMsh2	98798930	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	192	0	0	NA	exonic	Eml5	nonsynonymous SNV	Eml5:NM_001081191:exon36:c.G4759T:p.G1587C	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.745815201	2	0.9623251	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	100140017	12A2p6	cell line	sgMsh2	100140017	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	141	0	0	NA	exonic	Nrde2	synonymous SNV	"Nrde2:NM_001377383:exon6:c.T1401C:p.P467P,Nrde2:NM_001290303:exon7:c.T1560C:p.P520P,Nrde2:NM_183155:exon7:c.T1545C:p.P515P"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.65993345	2	0.9915585	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	100301676	12A2p6	cell line	sgMsh2	100301676	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	65	0	0	NA	exonic	Ttc7b	nonsynonymous SNV	"Ttc7b:NM_001033213:exon20:c.A2405C:p.N802T,Ttc7b:NM_001374711:exon21:c.A2456C:p.N819T"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.696094187	2	0.008589572	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	100619585	12A2p6	cell line	sgMsh2	100619585	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	152	0	0	NA	exonic	Rps6ka5	stopgain	"Rps6ka5:NM_001330702:exon4:c.G448T:p.E150X,Rps6ka5:NM_153587:exon4:c.G448T:p.E150X"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9996373	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	100878194	12A2p6	cell line	sgMsh2	100878194	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	121	0	0	NA	exonic	Gpr68	synonymous SNV	"Gpr68:NM_001177673:exon3:c.T1090C:p.L364L,Gpr68:NM_001177674:exon3:c.T1090C:p.L364L,Gpr68:NM_175493:exon3:c.T1090C:p.L364L"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.691574095	2	0.9599805	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr12	100916789	12A2p6	cell line	sgMsh2	100916789	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	121	0	0	NA	exonic	Ccdc88c	nonsynonymous SNV	Ccdc88c:NM_026681:exon29:c.C4823T:p.S1608F	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9986602	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	101549744	12A2p6	cell line	sgMsh2	101549744	-	A	Insertion	Mutect2;Vardict	2	0.163	350	0	0	NA	exonic	Catsperb	frameshift insertion	Catsperb:NM_173023:exon17:c.1639dupA:p.N547Kfs*23	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.736775017	NA	NA	CCA	frameshift	NA	NA	NA	1
M8_p20	chr12	101678566	12A2p6	cell line	sgMsh2	101678566	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.207	115	0	0	NA	exonic	Tc2n	stopgain	"Tc2n:NM_001082976:exon8:c.800delT:p.L267fs*0,Tc2n:NM_028924:exon8:c.800delT:p.L267fs*0"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.93565907	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
M8_p20	chr12	101885471	12A2p6	cell line	sgMsh2	101885471	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.15	192	0	0	NA	exonic	Trip11	frameshift insertion	Trip11:NM_028446:exon11:c.2332dupA:p.S778Kfs*2	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.678013819	NA	NA	ACT	frameshift	T	5	TTTTT	1
M8_p20	chr12	102474577	12A2p6	cell line	sgMsh2	102474577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	125	0	0	NA	exonic	Golga5	synonymous SNV	"Golga5:NM_001199004:exon3:c.T570G:p.V190V,Golga5:NM_013747:exon3:c.T570G:p.V190V"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.745815201	2	0.8295214	TTC	synonymous	NA	NA	NA	NA
M8_p20	chr12	102476292	12A2p6	cell line	sgMsh2	102476292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	91	0	0	NA	exonic	Golga5	nonsynonymous SNV	"Golga5:NM_001199004:exon4:c.T889C:p.S297P,Golga5:NM_013747:exon4:c.T889C:p.S297P"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.885938057	1	0.9318544	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	103104683	12A2p6	cell line	sgMsh2	103104683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.173	310	0	0	NA	exonic	Unc79	nonsynonymous SNV	Unc79:NM_001081017:exon27:c.G3829A:p.V1277I	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.781975938	2	0.9611468	CGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	103104843	12A2p6	cell line	sgMsh2	103104843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	273	0	0	NA	exonic	Unc79	frameshift deletion	Unc79:NM_001081017:exon27:c.3989delA:p.M1332Cfs*58	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.926618886	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr12	103424212	12A2p6	cell line	sgMsh2	103424212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	133	0	0	NA	exonic	Ddx24	synonymous SNV	"Ddx24:NM_001159502:exon2:c.T519C:p.A173A,Ddx24:NM_001364162:exon2:c.T381C:p.A127A,Ddx24:NM_001364163:exon2:c.T381C:p.A127A,Ddx24:NM_020494:exon2:c.T381C:p.A127A"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.999192	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr12	103998208	12A2p6	cell line	sgMsh2	103998208	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	173	0	0	NA	exonic	Serpina9	synonymous SNV	"Serpina9:NM_001361910:exon4:c.C969T:p.I323I,Serpina9:NM_001361912:exon4:c.C969T:p.I323I,Serpina9:NM_027997:exon4:c.C969T:p.I323I"	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.91305861	1	0.9922121	GGA	synonymous	NA	NA	NA	NA
M8_p20	chr12	105639212	12A2p6	cell line	sgMsh2	105639212	-	T	Insertion	Mutect2;Vardict	2	0.159	171	0	0	NA	exonic	Atg2b	frameshift insertion	Atg2b:NM_029654:exon30:c.4492dupA:p.T1498Nfs*16	12qE	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.718694648	NA	NA	TGT	frameshift	T	5	TTTTT	1
M8_p20	chr12	108361203	12A2p6	cell line	sgMsh2	108361203	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	141	0	0	NA	exonic	Cyp46a1	nonsynonymous SNV	Cyp46a1:NM_010010:exon14:c.T1273C:p.F425L	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.800056306	1	0.5087327	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	108690501	12A2p6	cell line	sgMsh2	108690501	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	126	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T935G:p.V312G	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.70061428	2	0.9564639	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	108690511	12A2p6	cell line	sgMsh2	108690511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	134	0	0	NA	exonic	Degs2	nonsynonymous SNV	Degs2:NM_027299:exon3:c.T925C:p.Y309H	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.745815201	2	0.8587633	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	110866793	12A2p6	cell line	sgMsh2	110866793	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	90	0	0	NA	exonic	Zfp839	nonsynonymous SNV	"Zfp839:NM_001199785:exon6:c.C1577A:p.P526H,Zfp839:NM_028365:exon7:c.C1805A:p.P602H"	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	1	1	0.9950637	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	111485500	12A2p6	cell line	sgMsh2	111485500	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	22	0	0	NA	exonic	Gm266	nonsynonymous SNV	Gm266:NM_001033248:exon1:c.A271C:p.S91R	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.944699254	1	0.8914786	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	111678648	12A2p6	cell line	sgMsh2	111678648	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	141	0	0	NA	exonic	Trmt61a	nonsynonymous SNV	"Trmt61a:NM_177374:exon1:c.A17G:p.Y6C,Trmt61a:NM_001099792:exon2:c.A17G:p.Y6C,Trmt61a:NM_001099793:exon2:c.A17G:p.Y6C"	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.65993345	2	0.9915585	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	111834998	12A2p6	cell line	sgMsh2	111834998	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	58	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon11:c.T1620G:p.D540E	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.944699254	1	0.9573728	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	111841027	12A2p6	cell line	sgMsh2	111841027	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	113	0	0	NA	exonic	Ppp1r13b	nonsynonymous SNV	Ppp1r13b:NM_011625:exon8:c.A899C:p.N300T	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.741295109	2	0.8052159	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	112913640	12A2p6	cell line	sgMsh2	112913640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	95	0	0	NA	exonic	Jag2	nonsynonymous SNV	Jag2:NM_010588:exon16:c.T2110C:p.W704R	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.885938057	1	0.9348774	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	112977954	12A2p6	cell line	sgMsh2	112977954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	179	0	0	NA	exonic	Btbd6	synonymous SNV	"Btbd6:NM_201646:exon4:c.G1038A:p.E346E,Btbd6:NM_001145900:exon5:c.G885A:p.E295E"	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.894978241	1	0.9838733	AGT	synonymous	NA	NA	NA	NA
M8_p20	chr12	113112206	12A2p6	cell line	sgMsh2	113112206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	222	0	0	NA	exonic	Mta1	nonsynonymous SNV	"Mta1:NM_001346696:exon2:c.T89C:p.L30P,Mta1:NM_001364620:exon2:c.T89C:p.L30P,Mta1:NM_001364621:exon2:c.T89C:p.L30P,Mta1:NM_001364622:exon2:c.T89C:p.L30P,Mta1:NM_001364623:exon2:c.T89C:p.L30P,Mta1:NM_054081:exon2:c.T89C:p.L30P"	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.70061428	2	0.9986619	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	113491756	12A2p6	cell line	sgMsh2	113491756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	356	0	0	NA	exonic	Adam6b	nonsynonymous SNV	Adam6b:NM_001009545:exon1:c.T2192C:p.V731A	12qF1	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.569531608	2	0.8081001	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	116137332	12A2p6	cell line	sgMsh2	116137332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	219	0	0	NA	exonic	Vipr2	nonsynonymous SNV	Vipr2:NM_009511:exon8:c.A765G:p.I255M	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.894978241	1	0.9909179	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	116233327	12A2p6	cell line	sgMsh2	116233327	T	-	Deletion	Strelka2;Vardict	2	0.1653	242	0	0	NA	exonic	Wdr60	frameshift deletion	Wdr60:NM_146039:exon9:c.1409delA:p.N470Ifs*22	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.747171229	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M8_p20	chr12	116318844	12A2p6	cell line	sgMsh2	116318844	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	328	0	0	NA	exonic	Esyt2	nonsynonymous SNV	Esyt2:NM_028731:exon3:c.A413C:p.E138A	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.587611976	2	0.9690734	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	116357934	12A2p6	cell line	sgMsh2	116357934	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	160	0	0	NA	exonic	Esyt2	synonymous SNV	Esyt2:NM_028731:exon15:c.G1581A:p.E527E	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.682533911	2	0.9935542	AGG	synonymous	TTGAGG	13	TTGAGGTTGAGGT	NA
M8_p20	chr12	117689223	12A2p6	cell line	sgMsh2	117689223	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	71	0	0	NA	exonic	Rapgef5	nonsynonymous SNV	"Rapgef5:NM_001373989:exon11:c.G1176T:p.Q392H,Rapgef5:NM_175930:exon13:c.G981T:p.Q327H"	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.931138978	1	0.9614844	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	117739648	12A2p6	cell line	sgMsh2	117739648	A	-	Deletion	Mutect2;Vardict	2	0.19	199	0	0	NA	exonic	Rapgef5	frameshift deletion	"Rapgef5:NM_001373989:exon21:c.2193delA:p.N732Tfs*6,Rapgef5:NM_175930:exon23:c.1998delA:p.N667Tfs*6"	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.858817504	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8_p20	chr12	117974938	12A2p6	cell line	sgMsh2	117974938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	149	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon60:c.C9794T:p.A3265V	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.714174556	2	0.9681188	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	118008803	12A2p6	cell line	sgMsh2	118008803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	502	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon53:c.T8645C:p.F2882S	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.818136675	2	0.7943054	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	118041010	12A2p6	cell line	sgMsh2	118041010	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	169	0	0	NA	exonic	Dnah11	nonsynonymous SNV	Dnah11:NM_010060:exon40:c.A6575C:p.D2192A	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.465569489	3	0.9865423	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	119163413	12A2p6	cell line	sgMsh2	119163413	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	101	0	0	NA	exonic	Itgb8	nonsynonymous SNV	Itgb8:NM_177290:exon13:c.T2105G:p.I702S	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.804576399	1	0.6395538	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr12	119446423	12A2p6	cell line	sgMsh2	119446423	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	281	0	0	NA	exonic	Macc1	nonsynonymous SNV	Macc1:NM_001163136:exon2:c.G925A:p.V309M	12qF2	chr12-3501831-119465464	5	4	1	0.9	4.068082914	NA	1	0.646373174	2	0.9998346	GGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	12421074	12A2p6	cell line	sgMsh2	12421074	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	132	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon25:c.A3492G:p.E1164E	13qA1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr13	19099960	12A2p6	cell line	sgMsh2	19099960	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.193	231	0	0	NA	exonic	Amph	nonsynonymous SNV	"Amph:NM_001289546:exon8:c.A658G:p.I220V,Amph:NM_175007:exon8:c.A658G:p.I220V"	13qA2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9704643	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	21674653	12A2p6	cell line	sgMsh2	21674653	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	186	0	0	NA	exonic	Olfr1360	nonsynonymous SNV	Olfr1360:NM_146543:exon1:c.G290A:p.C97Y	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999135	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	22179307	12A2p6	cell line	sgMsh2	22179307	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	421	0	0	NA	exonic	Vmn1r191	synonymous SNV	Vmn1r191:NM_145849:exon1:c.C276T:p.G92G	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	5.28E-09	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr13	22293541	12A2p6	cell line	sgMsh2	22293541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	221	0	0	NA	exonic	Vmn1r196	nonsynonymous SNV	Vmn1r196:NM_001167541:exon1:c.T349C:p.S117P	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8615593	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	22772540	12A2p6	cell line	sgMsh2	22772540	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	145	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.G786T:p.K262N	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995128	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	23249443	12A2p6	cell line	sgMsh2	23249443	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	366	0	0	NA	exonic	Vmn1r223	nonsynonymous SNV	Vmn1r223:NM_001083311:exon1:c.A206T:p.Q69L	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	1	4.46E-08	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	24812672	12A2p6	cell line	sgMsh2	24812672	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	102	0	0	NA	exonic	BC005537	synonymous SNV	BC005537:NM_024473:exon5:c.C600T:p.C200C	13qA3.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	0.6289782	GCA	synonymous	NA	NA	NA	NA
M8_p20	chr13	33397865	12A2p6	cell line	sgMsh2	33397865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	235	0	0	NA	exonic	Serpinb9h	nonsynonymous SNV	Serpinb9h:NM_001370927:exon3:c.T404C:p.M135T	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9999642	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	34044462	12A2p6	cell line	sgMsh2	34044462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	220	0	0	NA	exonic	Bphl	nonsynonymous SNV	Bphl:NM_026512:exon2:c.T146C:p.V49A	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9993416	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	37947507	12A2p6	cell line	sgMsh2	37947507	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	60	0	0	NA	exonic	Rreb1	nonsynonymous SNV	Rreb1:NM_001177869:exon11:c.A4636G:p.T1546A	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9827178	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	40180497	12A2p6	cell line	sgMsh2	40180497	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	101	0	0	NA	exonic	Ofcc1	nonsynonymous SNV	Ofcc1:NM_172143:exon9:c.T1117C:p.Y373H	13qA3.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9894398	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	44992047	12A2p6	cell line	sgMsh2	44992047	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	187	0	0	NA	exonic	Dtnbp1	nonsynonymous SNV	Dtnbp1:NM_025772:exon3:c.T133C:p.Y45H	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999171	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	45567073	12A2p6	cell line	sgMsh2	45567073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	73	0	0	NA	exonic	Atxn1	nonsynonymous SNV	"Atxn1:NM_001199304:exon6:c.A1345G:p.T449A,Atxn1:NM_001199305:exon7:c.A1345G:p.T449A,Atxn1:NM_009124:exon7:c.A1345G:p.T449A"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	46609656	12A2p6	cell line	sgMsh2	46609656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	92	0	0	NA	exonic	Cap2	stopgain	Cap2:NM_026056:exon5:c.C361T:p.R121X	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	CCG	nonsynonymous	GA	8	GAGAGAGA	NA
M8_p20	chr13	46717107	12A2p6	cell line	sgMsh2	46717107	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	83	0	0	NA	exonic	Nup153	nonsynonymous SNV	Nup153:NM_175749:exon2:c.A331G:p.T111A	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9933792	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	47228983	12A2p6	cell line	sgMsh2	47228983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	140	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon4:c.G314A:p.R105Q,Rnf144b:NM_146042:exon4:c.G314A:p.R105Q"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.759375477	2	0.8106118	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	49067362	12A2p6	cell line	sgMsh2	49067362	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	77	0	0	NA	exonic	Wnk2	synonymous SNV	"Wnk2:NM_001290311:exon19:c.A3762G:p.L1254L,Wnk2:NM_001290313:exon19:c.A3762G:p.L1254L,Wnk2:NM_029361:exon19:c.A3762G:p.L1254L"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.985380084	1	0.9885856	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr13	50423276	12A2p6	cell line	sgMsh2	50423276	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	208	0	0	NA	exonic	Fbxw17	nonsynonymous SNV	Fbxw17:NM_175401:exon3:c.A203G:p.Y68C	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999658	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	50469912	12A2p6	cell line	sgMsh2	50469912	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	72	0	0	NA	exonic	Nutm2	nonsynonymous SNV	Nutm2:NM_001033400:exon2:c.A644G:p.K215R	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9895109	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	51679952	12A2p6	cell line	sgMsh2	51679952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	58	0	0	NA	exonic	Secisbp2	synonymous SNV	"Secisbp2:NM_001308448:exon14:c.A1935G:p.K645K,Secisbp2:NM_029279:exon14:c.A2127G:p.K709K"	13qA5	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9812248	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr13	54221267	12A2p6	cell line	sgMsh2	54221267	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.351	51	0	0	NA	exonic	Hrh2	frameshift deletion	Hrh2:NM_001010973:exon3:c.1121delC:p.F375Sfs*52	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M8_p20	chr13	54463530	12A2p6	cell line	sgMsh2	54463530	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	112	0	0	NA	exonic	Thoc3	synonymous SNV	Thoc3:NM_028597:exon5:c.G834A:p.G278G	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	TCC	synonymous	NA	NA	NA	NA
M8_p20	chr13	54539774	12A2p6	cell line	sgMsh2	54539774	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	165	0	0	NA	exonic	Simc1	nonsynonymous SNV	Simc1:NM_176987:exon6:c.A3361C:p.T1121P	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997904	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	54661063	12A2p6	cell line	sgMsh2	54661063	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	142	0	0	NA	exonic	Faf2	nonsynonymous SNV	Faf2:NM_178397:exon11:c.A1265C:p.N422T	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994471	AAC	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr13	55060294	12A2p6	cell line	sgMsh2	55060294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	193	0	0	NA	exonic	Uimc1	synonymous SNV	"Uimc1:NM_001293660:exon6:c.T492C:p.S164S,Uimc1:NM_001359757:exon8:c.T1335C:p.S445S,Uimc1:NM_001359758:exon8:c.T279C:p.S93S,Uimc1:NM_011307:exon8:c.T1335C:p.S445S"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.9995736	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr13	55167855	12A2p6	cell line	sgMsh2	55167855	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	91	0	0	NA	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon17:c.A2194G:p.T732A	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.664453543	2	0.009911107	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	56176188	12A2p6	cell line	sgMsh2	56176188	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	75	0	0	NA	exonic	Tifab	nonsynonymous SNV	"Tifab:NM_001168615:exon3:c.A441C:p.E147D,Tifab:NM_145976:exon3:c.A441C:p.E147D"	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	1	0.9907462	ATT	nonsynonymous	TTCA	9	TTCATTCAT	NA
M8_p20	chr13	56629694	12A2p6	cell line	sgMsh2	56629694	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.405	85	0	0	NA	exonic	Tgfbi	frameshift deletion	Tgfbi:NM_009369:exon8:c.990delG:p.G332Afs*78	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8_p20	chr13	58576765	12A2p6	cell line	sgMsh2	58576765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	0	0	NA	exonic	Slc28a3	nonsynonymous SNV	Slc28a3:NM_022317:exon6:c.A674G:p.Y225C	13qB1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989147	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	60896121	12A2p6	cell line	sgMsh2	60896121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	237	0	0	NA	exonic	Ctla2b	nonsynonymous SNV	"Ctla2b:NM_001145801:exon4:c.A233G:p.N78S,Ctla2b:NM_007797:exon4:c.A233G:p.N78S"	13qB2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999899	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	63015916	12A2p6	cell line	sgMsh2	63015916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	100	0	0	NA	exonic	Aopep	synonymous SNV	"Aopep:NM_001289924:exon2:c.T750C:p.T250T,Aopep:NM_001289926:exon2:c.T750C:p.T250T"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr13	64921401	12A2p6	cell line	sgMsh2	64921401	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	175	0	0	NA	exonic	Spata31	synonymous SNV	Spata31:NM_030047:exon3:c.C1362T:p.T454T	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9982455	CCC	synonymous	NA	NA	NA	NA
M8_p20	chr13	67542395	12A2p6	cell line	sgMsh2	67542395	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.283	127	0	0	NA	exonic	Zfp748	frameshift deletion	Zfp748:NM_001035231:exon4:c.745delT:p.Y249Tfs*46	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TAG	frameshift	NA	NA	NA	-1
M8_p20	chr13	69503700	12A2p6	cell line	sgMsh2	69503700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	193	0	0	NA	exonic	Tent4a	nonsynonymous SNV	"Tent4a:NM_001169131:exon9:c.T872C:p.V291A,Tent4a:NM_198600:exon9:c.T872C:p.V291A"	13qB3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8826343	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	70772033	12A2p6	cell line	sgMsh2	70772033	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	95	0	0	NA	exonic	Adamts16	nonsynonymous SNV	Adamts16:NM_172053:exon13:c.A1967G:p.K656R	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.7675175	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	74050084	12A2p6	cell line	sgMsh2	74050084	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	47	0	0	NA	exonic	Cep72	synonymous SNV	Cep72:NM_028959:exon7:c.T1176G:p.S392S	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.8773407	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr13	75878849	12A2p6	cell line	sgMsh2	75878849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	235	0	0	NA	exonic	Rhobtb3	nonsynonymous SNV	Rhobtb3:NM_028493:exon9:c.A1404C:p.K468N	13qC1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999891	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	81559465	12A2p6	cell line	sgMsh2	81559465	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	160	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon20:c.T3821C:p.F1274S	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	2	1	1	0.9997412	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	81595235	12A2p6	cell line	sgMsh2	81595235	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	155	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon2:c.T146A:p.V49D	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996804	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	91690934	12A2p6	cell line	sgMsh2	91690934	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	238	0	0	NA	exonic	Ssbp2	synonymous SNV	"Ssbp2:NM_001360776:exon13:c.T858G:p.S286S,Ssbp2:NM_024186:exon13:c.T834G:p.S278S,Ssbp2:NM_001360775:exon14:c.T948G:p.S316S,Ssbp2:NM_024272:exon14:c.T924G:p.S308S"	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999904	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr13	93498343	12A2p6	cell line	sgMsh2	93498343	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	70	0	0	NA	exonic	Jmy	nonsynonymous SNV	Jmy:NM_021310:exon1:c.T964C:p.Y322H	13qC3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.96643	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	95632121	12A2p6	cell line	sgMsh2	95632121	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	134	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon33:c.A4270G:p.T1424A	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992253	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	95701444	12A2p6	cell line	sgMsh2	95701444	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	338	0	0	NA	exonic	F2rl2	synonymous SNV	F2rl2:NM_010170:exon2:c.C996A:p.T332T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9999805	CCG	synonymous	NA	NA	NA	NA
M8_p20	chr13	96030575	12A2p6	cell line	sgMsh2	96030575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	127	0	0	NA	exonic	Sv2c	nonsynonymous SNV	Sv2c:NM_029210:exon4:c.A821C:p.K274T	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989595	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	98735057	12A2p6	cell line	sgMsh2	98735057	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	174	0	0	NA	exonic	Fcho2	synonymous SNV	Fcho2:NM_172591:exon20:c.A1650G:p.E550E	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.754855385	2	0.9153598	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr13	100060821	12A2p6	cell line	sgMsh2	100060821	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	131	0	0	NA	exonic	Bdp1	nonsynonymous SNV	Bdp1:NM_001081061:exon17:c.A3055G:p.T1019A	13qD1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991209	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	110260597	12A2p6	cell line	sgMsh2	110260597	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	157	0	0	NA	exonic	Rab3c	nonsynonymous SNV	"Rab3c:NM_001360099:exon2:c.C128A:p.S43Y,Rab3c:NM_023852:exon2:c.C134A:p.S45Y"	13qD2.1	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.7641369	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	111760151	12A2p6	cell line	sgMsh2	111760151	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.127	52	0	0	NA	exonic	Map3k1	nonsynonymous SNV	Map3k1:NM_011945:exon10:c.A1754G:p.H585R	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.5740517	2	0.09215412	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	114977646	12A2p6	cell line	sgMsh2	114977646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	332	0	0	NA	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon21:c.A2722G:p.T908A	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	GTA	nonsynonymous	GATGT	10	GATGTGATGT	NA
M8_p20	chr13	115001595	12A2p6	cell line	sgMsh2	115001595	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	307	0	0	NA	exonic	Itga1	nonsynonymous SNV	Itga1:NM_001033228:exon11:c.A1253G:p.N418S	13qD2.2	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr13	116910900	12A2p6	cell line	sgMsh2	116910900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	177	0	0	NA	exonic	Parp8	nonsynonymous SNV	Parp8:NM_001081009:exon10:c.T635C:p.L212P	13qD2.3	chr13-3556297-119495179	4	2	2	0.9	4.068082914	NA	1	0.908538517	1	0.9911099	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	3191154	12A2p6	cell line	sgMsh2	3191154	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.486	61	0	0	NA	exonic	Gm5795	synonymous SNV	Gm5795:NM_001270806:exon4:c.A474G:p.K158K	14qA1	chr14-3190453-6676162	3.7658607	2.7658607	1	0.9	4.068082914	NA	2	1	1	0.9834199	AAG	synonymous	A	5	AAAAA	NA
M8_p20	chr14	7927374	12A2p6	cell line	sgMsh2	7927374	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	168	0	0	NA	exonic	Flnb	synonymous SNV	"Flnb:NM_001081427:exon34:c.C5583A:p.P1861P,Flnb:NM_134080:exon34:c.C5550A:p.P1850P"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998153	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr14	8301199	12A2p6	cell line	sgMsh2	8301199	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	48	0	0	NA	exonic	Fam107a	synonymous SNV	"Fam107a:NM_001360338:exon2:c.T30A:p.A10A,Fam107a:NM_001360339:exon2:c.T114A:p.A38A,Fam107a:NM_183187:exon2:c.T30A:p.A10A,Fam107a:NM_001360337:exon3:c.T30A:p.A10A"	14qA1	chr14-7548571-19566630	3	2	1	0.9	4.068082914	NA	1	1	1	0.9716478	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr14	16283464	12A2p6	cell line	sgMsh2	16283464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	92	0	0	NA	exonic	Ngly1	synonymous SNV	"Ngly1:NM_001362432:exon8:c.T1185C:p.L395L,Ngly1:NM_001362433:exon8:c.T1242C:p.L414L,Ngly1:NM_021504:exon8:c.T1242C:p.L414L"	14qA2	chr14-7548571-19566630	3	2	1	0.9	4.068082914	NA	1	1	1	0.9954612	TTA	synonymous	NA	NA	NA	NA
M8_p20	chr14	19778144	12A2p6	cell line	sgMsh2	19778144	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	111	0	0	NA	exonic	Nid2	nonsynonymous SNV	Nid2:NM_008695:exon5:c.A1647C:p.E549D	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9979585	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	20550115	12A2p6	cell line	sgMsh2	20550115	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	97	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon21:c.T4553A:p.L1518H	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9963212	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	20588100	12A2p6	cell line	sgMsh2	20588100	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	137	0	0	NA	exonic	Usp54	nonsynonymous SNV	Usp54:NM_030180:exon8:c.T800G:p.L267R	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9993173	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	21634556	12A2p6	cell line	sgMsh2	21634556	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	144	0	0	NA	exonic	Kat6b	synonymous SNV	"Kat6b:NM_001205241:exon11:c.T1581C:p.Y527Y,Kat6b:NM_017479:exon11:c.T1581C:p.Y527Y"	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994918	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr14	24470666	12A2p6	cell line	sgMsh2	24470666	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	52	0	0	NA	exonic	Polr3a	nonsynonymous SNV	Polr3a:NM_001081247:exon14:c.A1777G:p.T593A	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9759459	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	25874016	12A2p6	cell line	sgMsh2	25874016	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	173	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon5:c.G628A:p.A210T	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998504	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	29170631	12A2p6	cell line	sgMsh2	29170631	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	142	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon13:c.T1253A:p.F418Y	14qA3	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994471	GAA	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr14	30123122	12A2p6	cell line	sgMsh2	30123122	C	-	Deletion	Mutect2;Vardict	2	0.294	59	0	0	NA	exonic	Cacna1d	frameshift deletion	"Cacna1d:NM_001083616:exon14:c.2004delG:p.M669Cfs*27,Cacna1d:NM_028981:exon14:c.2070delG:p.M691Cfs*27,Cacna1d:NM_001302637:exon15:c.2064delG:p.M689Cfs*27"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TCC	frameshift	NA	NA	NA	-1
M8_p20	chr14	30565598	12A2p6	cell line	sgMsh2	30565598	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	50	0	0	NA	exonic	Tkt	nonsynonymous SNV	Tkt:NM_009388:exon5:c.A548C:p.D183A	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9738829	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	30930344	12A2p6	cell line	sgMsh2	30930344	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	86	0	0	NA	exonic	Itih1	synonymous SNV	"Itih1:NM_001306078:exon20:c.T2391C:p.I797I,Itih1:NM_008406:exon20:c.T2379C:p.I793I"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9941616	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr14	30940873	12A2p6	cell line	sgMsh2	30940873	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	199	0	0	NA	exonic	Itih1	frameshift deletion	"Itih1:NM_001306078:exon6:c.689delA:p.K230Rfs*9,Itih1:NM_008406:exon6:c.677delA:p.K226Rfs*9"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr14	31145357	12A2p6	cell line	sgMsh2	31145357	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	142	0	0	NA	exonic	Stab1	nonsynonymous SNV	Stab1:NM_138672:exon49:c.T5045A:p.I1682N	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994471	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	31294410	12A2p6	cell line	sgMsh2	31294410	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	133	0	0	NA	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon30:c.C4882T:p.L1628L	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.999192	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr14	31535650	12A2p6	cell line	sgMsh2	31535650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	84	0	0	NA	exonic	Colq	synonymous SNV	Colq:NM_009937:exon12:c.T759C:p.P253P	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	0.867857688	1	0.8938384	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr14	32342159	12A2p6	cell line	sgMsh2	32342159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	91	0	0	NA	exonic	Ogdhl	nonsynonymous SNV	Ogdhl:NM_001081130:exon16:c.A1981G:p.S661G	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9952666	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	32426153	12A2p6	cell line	sgMsh2	32426153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	55	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A926G:p.N309S	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9787452	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	33104101	12A2p6	cell line	sgMsh2	33104101	A	-	Deletion	Strelka2;Vardict	2	0.3704	27	0	0	NA	exonic	Wdfy4	frameshift deletion	Wdfy4:NM_001146022:exon19:c.3457delT:p.S1153Qfs*25	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
M8_p20	chr14	34342161	12A2p6	cell line	sgMsh2	34342161	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	313	0	0	NA	exonic	Glud1	nonsynonymous SNV	Glud1:NM_008133:exon12:c.A1537G:p.T513A	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999996	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	34594872	12A2p6	cell line	sgMsh2	34594872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	106	0	0	NA	exonic	Opn4	nonsynonymous SNV	"Opn4:NM_001128599:exon7:c.A959G:p.Y320C,Opn4:NM_013887:exon7:c.A959G:p.Y320C"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	2	1	1	0.9974804	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	35569503	12A2p6	cell line	sgMsh2	35569503	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	135	0	0	NA	exonic	Grid1	nonsynonymous SNV	Grid1:NM_008166:exon15:c.T2366G:p.L789R	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9992573	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	40860639	12A2p6	cell line	sgMsh2	40860639	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	65	0	0	NA	exonic	Sh2d4b	nonsynonymous SNV	"Sh2d4b:NM_001368700:exon4:c.T593G:p.L198R,Sh2d4b:NM_177816:exon4:c.T593G:p.L198R,Sh2d4b:NM_001368701:exon5:c.T593G:p.L198R"	14qB	chr14-19751082-41183403	3	2	1	0.9	4.068082914	NA	1	1	1	0.9859582	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	43819394	12A2p6	cell line	sgMsh2	43819394	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	292	0	0	NA	exonic	Ear1	nonsynonymous SNV	Ear1:NM_007894:exon2:c.C16A:p.L6I	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.999999	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	45620818	12A2p6	cell line	sgMsh2	45620818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	165	0	0	NA	exonic	Ddhd1	synonymous SNV	"Ddhd1:NM_001039106:exon3:c.T987C:p.S329S,Ddhd1:NM_176845:exon3:c.T987C:p.S329S,Ddhd1:NM_001042719:exon4:c.T1089C:p.S363S"	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	0.994420268	1	0.9997329	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr14	47551350	12A2p6	cell line	sgMsh2	47551350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	70	0	0	NA	exonic	Atg14	nonsynonymous SNV	Atg14:NM_172599:exon5:c.A545G:p.D182G	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9885981	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	48252693	12A2p6	cell line	sgMsh2	48252694	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.643	42	0	0	NA	exonic	Peli2	frameshift deletion	Peli2:NM_033602:exon5:c.621_622del:p.E209Dfs*25	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	2	1	NA	NA	GGA	frameshift	GA	8	GAGAGAGA	-2
M8_p20	chr14	49080873	12A2p6	cell line	sgMsh2	49080873	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	176	0	0	NA	exonic	Ap5m1	nonsynonymous SNV	"Ap5m1:NM_001360070:exon5:c.G1126A:p.G376S,Ap5m1:NM_144535:exon5:c.G1126A:p.G376S"	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998682	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	50148338	12A2p6	cell line	sgMsh2	50148338	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	142	0	0	NA	exonic	Olfr729	frameshift deletion	Olfr729:NM_146278:exon1:c.535delT:p.C179Vfs*22	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr14	50346213	12A2p6	cell line	sgMsh2	50346213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	91	0	0	NA	exonic	Olfr735	synonymous SNV	Olfr735:NM_001011754:exon1:c.T228C:p.V76V	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9952666	TAA	synonymous	NA	NA	NA	NA
M8_p20	chr14	50413660	12A2p6	cell line	sgMsh2	50413660	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	262	0	0	NA	exonic	Olfr738	nonsynonymous SNV	Olfr738:NM_146420:exon1:c.T115C:p.Y39H	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999965	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	50453867	12A2p6	cell line	sgMsh2	50453867	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	205	0	0	NA	exonic	Olfr740	nonsynonymous SNV	Olfr740:NM_146667:exon1:c.G814T:p.A272S	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999612	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	50619132	12A2p6	cell line	sgMsh2	50619132	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	59	0	0	NA	exonic	Olfr744	nonsynonymous SNV	Olfr744:NM_001011738:exon1:c.A909G:p.I303M	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9819865	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	50892464	12A2p6	cell line	sgMsh2	50892464	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	80	0	0	NA	exonic	Klhl33	synonymous SNV	"Klhl33:NM_001166651:exon1:c.C792T:p.H264H,Klhl33:NM_001370764:exon2:c.C1572T:p.H524H"	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9924927	CGT	synonymous	NA	NA	NA	NA
M8_p20	chr14	50893267	12A2p6	cell line	sgMsh2	50893267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	32	0	0	NA	exonic	Klhl33	nonsynonymous SNV	Klhl33:NM_001370764:exon2:c.T769C:p.F257L	14qC1	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	9.90E-05	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	51990911	12A2p6	cell line	sgMsh2	51990911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	69	0	0	NA	exonic	Arhgef40	synonymous SNV	"Arhgef40:NM_001145921:exon5:c.A1614G:p.V538V,Arhgef40:NM_001145922:exon5:c.A1614G:p.V538V,Arhgef40:NM_198249:exon5:c.A1614G:p.V538V"	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9881126	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr14	52036009	12A2p6	cell line	sgMsh2	52036009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	143	0	0	NA	exonic	Olfr221	nonsynonymous SNV	Olfr221:NM_001001808:exon1:c.T101C:p.M34T	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994699	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	52176699	12A2p6	cell line	sgMsh2	52176699	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	117	0	0	NA	exonic	Supt16	synonymous SNV	Supt16:NM_033618:exon13:c.A1422C:p.R474R	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984143	TTC	synonymous	CTTCT	17	CTCTTCGCTTCTCTTCT	NA
M8_p20	chr14	52217904	12A2p6	cell line	sgMsh2	52217904	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.38	43	0	0	NA	exonic	Chd8	frameshift deletion	Chd8:NM_201637:exon16:c.3125delA:p.N1042Ifs*11	14qC2	chr14-43673573-52852156	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr14	54625640	12A2p6	cell line	sgMsh2	54625640	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	52	0	0	NA	exonic	Psmb11	nonsynonymous SNV	Psmb11:NM_175204:exon1:c.A314G:p.Y105C	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9759459	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	54710699	12A2p6	cell line	sgMsh2	54710699	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	85	0	0	NA	exonic	Cebpe	nonsynonymous SNV	Cebpe:NM_207131:exon2:c.T686G:p.I229S	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	0.87237778	1	0.09628867	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	54897171	12A2p6	cell line	sgMsh2	54897171	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	158	0	0	NA	exonic	Pabpn1	synonymous SNV	Pabpn1:NM_019402:exon6:c.T768C:p.G256G	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997184	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr14	54942441	12A2p6	cell line	sgMsh2	54942441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	57	0	0	NA	exonic	Myh6	nonsynonymous SNV	"Myh6:NM_001164171:exon38:c.A5708G:p.H1903R,Myh6:NM_010856:exon38:c.A5708G:p.H1903R"	14qC2	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	9.96E-07	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	54985777	12A2p6	cell line	sgMsh2	54985777	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	82	0	0	NA	exonic	Myh7	nonsynonymous SNV	"Myh7:NM_001361607:exon20:c.A2110G:p.I704V,Myh7:NM_080728:exon20:c.A2110G:p.I704V"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9930959	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	55064755	12A2p6	cell line	sgMsh2	55064755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	63	0	0	NA	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon9:c.A5771G:p.K1924R	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	0.922098794	1	0.9465947	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	55104392	12A2p6	cell line	sgMsh2	55104392	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	83	0	0	NA	exonic	Ap1g2	nonsynonymous SNV	"Ap1g2:NM_001303502:exon6:c.A70G:p.I24V,Ap1g2:NM_007455:exon7:c.A712G:p.I238V"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	2	1	1	0.9933792	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	55113475	12A2p6	cell line	sgMsh2	55113475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	26	0	0	NA	exonic	Jph4	synonymous SNV	Jph4:NM_177049:exon3:c.C1083T:p.D361D	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9309981	TGT	synonymous	NA	NA	NA	NA
M8_p20	chr14	55589486	12A2p6	cell line	sgMsh2	55589486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	135	0	0	NA	exonic	Psme2	nonsynonymous SNV	"Psme2:NM_001029855:exon5:c.A233G:p.K78R,Psme2:NM_011190:exon5:c.A257G:p.K86R"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9992573	CTT	nonsynonymous	CCTT	9	CCTTCCTTC	NA
M8_p20	chr14	55754538	12A2p6	cell line	sgMsh2	55754538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	41	0	0	NA	exonic	Cideb	synonymous SNV	Cideb:NM_009894:exon5:c.A558G:p.Q186Q	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	2	1	1	0.9622644	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr14	55870821	12A2p6	cell line	sgMsh2	55870821	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	99	0	0	NA	exonic	Nynrin	synonymous SNV	Nynrin:NM_001040072:exon8:c.C3384A:p.P1128P	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9966178	CCA	synonymous	NA	NA	NA	NA
M8_p20	chr14	56157458	12A2p6	cell line	sgMsh2	56157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	119	0	0	NA	exonic	Gzmg	nonsynonymous SNV	Gzmg:NM_010375:exon4:c.A352G:p.K118E	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9985424	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	56761852	12A2p6	cell line	sgMsh2	56761852	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	144	0	0	NA	exonic	Pspc1	nonsynonymous SNV	"Pspc1:NM_001360420:exon3:c.T247G:p.L83V,Pspc1:NM_025682:exon4:c.T946G:p.L316V"	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994918	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	57480701	12A2p6	cell line	sgMsh2	57480701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	270	0	0	NA	exonic	Ift88	nonsynonymous SNV	Ift88:NM_009376:exon19:c.T1730C:p.M577T	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999975	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	57954155	12A2p6	cell line	sgMsh2	57954155	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	153	0	0	NA	exonic	Micu2	frameshift deletion	Micu2:NM_028643:exon4:c.438delT:p.F146Lfs*8	14qC3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr14	61205329	12A2p6	cell line	sgMsh2	61205329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	206	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.A4823C:p.K1608T	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999628	AAG	nonsynonymous	AGC	8	AGCAGCAG	NA
M8_p20	chr14	65975611	12A2p6	cell line	sgMsh2	65975611	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	75	0	0	NA	exonic	Clu	nonsynonymous SNV	Clu:NM_013492:exon5:c.T445G:p.F149V	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9907462	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	66004100	12A2p6	cell line	sgMsh2	66004100	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	62	0	0	NA	exonic	Gulo	nonsynonymous SNV	Gulo:NM_178747:exon4:c.A308T:p.H103L	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9840939	ATG	nonsynonymous	GGCCA	10	GGCCAGGCCA	NA
M8_p20	chr14	66110173	12A2p6	cell line	sgMsh2	66110173	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.354	106	0	0	NA	exonic	Ephx2	nonsynonymous SNV	"Ephx2:NM_001271403:exon2:c.G235T:p.A79S,Ephx2:NM_001271421:exon2:c.G91T:p.A31S,Ephx2:NM_001271402:exon3:c.G130T:p.A44S,Ephx2:NM_007940:exon3:c.G289T:p.A97S"	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9974804	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	66149015	12A2p6	cell line	sgMsh2	66149015	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	103	0	0	NA	exonic	Chrna2	stopgain	Chrna2:NM_144803:exon6:c.G609A:p.W203X	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9971414	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	67714843	12A2p6	cell line	sgMsh2	67714843	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.294	134	0	0	NA	exonic	Cdca2	frameshift deletion	"Cdca2:NM_001110162:exon3:c.78delT:p.F26Lfs*8,Cdca2:NM_175384:exon3:c.78delT:p.F26Lfs*8"	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr14	68086066	12A2p6	cell line	sgMsh2	68086066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	177	0	0	NA	exonic	Nefl	synonymous SNV	Nefl:NM_010910:exon2:c.G1140A:p.K380K	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998736	AGA	synonymous	NA	NA	NA	NA
M8_p20	chr14	68637348	12A2p6	cell line	sgMsh2	68637348	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.265	206	0	0	NA	exonic	Adam28	synonymous SNV	"Adam28:NM_001048175:exon9:c.T879C:p.D293D,Adam28:NM_010082:exon9:c.T879C:p.D293D,Adam28:NM_183366:exon9:c.T879C:p.D293D"	14qD1	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999628	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr14	73287647	12A2p6	cell line	sgMsh2	73287647	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	72	0	0	NA	exonic	Rb1	nonsynonymous SNV	Rb1:NM_009029:exon6:c.T545C:p.M182T	14qD3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9895109	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	73579376	12A2p6	cell line	sgMsh2	73579376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	158	0	0	NA	exonic	Sucla2	synonymous SNV	"Sucla2:NM_001361638:exon4:c.T153C:p.S51S,Sucla2:NM_011506:exon5:c.T555C:p.S185S"	14qD3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997184	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr14	75032196	12A2p6	cell line	sgMsh2	75032196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	195	0	0	NA	exonic	Rubcnl	nonsynonymous SNV	Rubcnl:NM_198642:exon2:c.T293C:p.V98A	14qD3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999409	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	75126519	12A2p6	cell line	sgMsh2	75126519	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	148	0	0	NA	exonic	Lrrc63	synonymous SNV	Lrrc63:NM_027581:exon3:c.T171C:p.P57P	14qD3	chr14-53336808-75777336	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995707	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr14	77034020	12A2p6	cell line	sgMsh2	77034020	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	101	0	0	NA	exonic	Lacc1	nonsynonymous SNV	Lacc1:NM_172488:exon4:c.A726T:p.K242N	14qD3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9968906	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	79768259	12A2p6	cell line	sgMsh2	79768259	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	110	0	0	NA	exonic	Pcdh8	nonsynonymous SNV	"Pcdh8:NM_001042726:exon2:c.G2397T:p.K799N,Pcdh8:NM_021543:exon2:c.G2688T:p.K896N"	14qD3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9978708	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	103152172	12A2p6	cell line	sgMsh2	103152172	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	326	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon61:c.A10531C:p.S3511R	14qE2.3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	103169955	12A2p6	cell line	sgMsh2	103169955	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	86	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon57:c.C8258A:p.P2753H	14qE2.3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	0.985380084	1	0.9918892	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	108911237	12A2p6	cell line	sgMsh2	108911237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	105	0	0	NA	exonic	Slitrk1	nonsynonymous SNV	Slitrk1:NM_199065:exon1:c.G2041A:p.D681N	14qE3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9973721	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	110751677	12A2p6	cell line	sgMsh2	110751677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	119	0	0	NA	exonic	Slitrk6	synonymous SNV	Slitrk6:NM_175499:exon2:c.T597C:p.P199P	14qE3	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9985424	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr14	111680102	12A2p6	cell line	sgMsh2	111680102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	87	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.A1232G:p.D411G,Slitrk5:NM_001378769:exon2:c.A1157G:p.D386G,Slitrk5:NM_001378770:exon2:c.A1157G:p.D386G,Slitrk5:NM_198865:exon2:c.A1157G:p.D386G"	14qE4	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9944015	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	118886584	12A2p6	cell line	sgMsh2	118886584	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	168	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360413:exon14:c.A1095T:p.E365D,Dzip1:NM_001360411:exon17:c.A1833T:p.E611D,Dzip1:NM_025943:exon17:c.A1836T:p.E612D,Dzip1:NM_001360412:exon18:c.A1152T:p.E384D"	14qE4	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998153	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	118922747	12A2p6	cell line	sgMsh2	118922747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	24	0	0	NA	exonic	Dzip1	nonsynonymous SNV	"Dzip1:NM_001360411:exon4:c.G48T:p.E16D,Dzip1:NM_025943:exon4:c.G48T:p.E16D"	14qE4	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9252788	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	119026552	12A2p6	cell line	sgMsh2	119026552	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.325	71	0	0	NA	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon27:c.A3065G:p.H1022R	14qE4	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9890639	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	121474650	12A2p6	cell line	sgMsh2	121474650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	96	0	0	NA	exonic	Slc15a1	nonsynonymous SNV	Slc15a1:NM_053079:exon16:c.T1165G:p.F389V	14qE5	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9961633	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	122142379	12A2p6	cell line	sgMsh2	122142379	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	265	0	0	NA	exonic	Tm9sf2	nonsynonymous SNV	Tm9sf2:NM_080556:exon8:c.A841G:p.R281G	14qE5	chr14-75845946-123291781	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999969	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	123515710	12A2p6	cell line	sgMsh2	123515710	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	172	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon8:c.G863T:p.R288I	14qE5	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr14	123972201	12A2p6	cell line	sgMsh2	123972201	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	332	0	0	NA	exonic	Itgbl1	nonsynonymous SNV	Itgbl1:NM_145467:exon10:c.T1363C:p.C455R	14qE5	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	3325898	12A2p6	cell line	sgMsh2	3325898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	272	0	0	NA	exonic	Ghr	nonsynonymous SNV	"Ghr:NM_001286370:exon9:c.G902T:p.R301M,Ghr:NM_010284:exon9:c.G902T:p.R301M"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.791016122	2	0.8789577	CCT	nonsynonymous	ACCT	8	ACCTACCT	NA
M8_p20	chr15	4759944	12A2p6	cell line	sgMsh2	4759944	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	167	0	0	NA	exonic	C6	synonymous SNV	C6:NM_016704:exon7:c.T870C:p.N290N	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9998073	ATG	synonymous	A	5	AAAAA	NA
M8_p20	chr15	6823567	12A2p6	cell line	sgMsh2	6823567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	183	0	0	NA	exonic	Osmr	nonsynonymous SNV	"Osmr:NM_001310469:exon13:c.T1843C:p.Y615H,Osmr:NM_011019:exon13:c.T1846C:p.Y616H"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.867857688	1	0.9459581	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	7185733	12A2p6	cell line	sgMsh2	7185733	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	99	0	0	NA	exonic	Lifr	nonsynonymous SNV	"Lifr:NM_001358593:exon16:c.C2320T:p.H774Y,Lifr:NM_013584:exon16:c.C2320T:p.H774Y"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9966178	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	8187038	12A2p6	cell line	sgMsh2	8187038	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	171	0	0	NA	exonic	Cplane1	nonsynonymous SNV	Cplane1:NM_001162906:exon13:c.C1739A:p.A580D	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.953739439	1	0.9986951	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	10377407	12A2p6	cell line	sgMsh2	10377407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	174	0	0	NA	exonic	Agxt2	nonsynonymous SNV	"Agxt2:NM_001031851:exon4:c.A392G:p.D131G,Agxt2:NM_001310735:exon4:c.A392G:p.D131G,Agxt2:NM_001310736:exon4:c.A389G:p.D130G"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.72321474	2	0.978736	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	12263796	12A2p6	cell line	sgMsh2	12263796	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	129	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon13:c.A634C:p.T212P,Mtmr12:NM_172958:exon13:c.A1243C:p.T415P"	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.565011516	2	0.8054318	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	12385474	12A2p6	cell line	sgMsh2	12385474	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	65	0	0	NA	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon19:c.A3209G:p.K1070R	15qA1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.641853082	2	0.8388824	CTT	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr15	16823315	12A2p6	cell line	sgMsh2	16823315	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	181	0	0	NA	exonic	Cdh9	frameshift deletion	Cdh9:NM_009869:exon3:c.382delA:p.K128Rfs*2	15qA2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.813616583	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr15	16856053	12A2p6	cell line	sgMsh2	16856053	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	76	0	0	NA	exonic	Cdh9	synonymous SNV	Cdh9:NM_009869:exon12:c.A2178G:p.P726P	15qA2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9911251	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr15	27755139	12A2p6	cell line	sgMsh2	27755139	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	101	0	0	NA	exonic	Trio	nonsynonymous SNV	Trio:NM_001081302:exon43:c.A6335G:p.K2112R	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.727734832	2	0.8124286	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	27758401	12A2p6	cell line	sgMsh2	27758401	A	-	Deletion	Strelka2;Vardict	2	0.2586	116	0	0	NA	exonic	Trio	stopgain	Trio:NM_001081302:exon41:c.6092delT:p.L2031fs*0	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
M8_p20	chr15	28349900	12A2p6	cell line	sgMsh2	28349900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	176	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon46:c.T7728C:p.I2576I	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9998682	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr15	28449244	12A2p6	cell line	sgMsh2	28449244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	318	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon74:c.T12791C:p.F4264S	15qB1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.813616583	2	0.6639543	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	31601602	12A2p6	cell line	sgMsh2	31601602	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	40	0	0	NA	exonic	Cct5	nonsynonymous SNV	Cct5:NM_007637:exon1:c.A104G:p.K35R	15qB2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9606994	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	34433110	12A2p6	cell line	sgMsh2	34433112	GAA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.189	316	0	0	NA	exonic	Matn2	nonframeshift deletion	"Matn2:NM_001358780:exon17:c.2659_2661del:p.E888del,Matn2:NM_016762:exon17:c.2602_2604del:p.E869del"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.854297412	NA	NA	TGA	inframe	GAA	8	GAAGAAGA	-3
M8_p20	chr15	35883016	12A2p6	cell line	sgMsh2	35883016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	185	0	0	NA	exonic	Vps13b	nonsynonymous SNV	Vps13b:NM_177151:exon51:c.A9305C:p.N3102T	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9999098	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	36599446	12A2p6	cell line	sgMsh2	36599446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	102	0	0	NA	exonic	Pabpc1	nonsynonymous SNV	Pabpc1:NM_008774:exon8:c.T1004G:p.F335C	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9970186	AAA	nonsynonymous	AAACC	10	AAACCAAACC	NA
M8_p20	chr15	36790923	12A2p6	cell line	sgMsh2	36790923	A	G	SNV	Mutect2;MuSe;Vardict	3	0.123	77	0	0	NA	exonic	Ywhaz	nonsynonymous SNV	"Ywhaz:NM_001253805:exon2:c.T55C:p.Y19H,Ywhaz:NM_001253806:exon2:c.T55C:p.Y19H,Ywhaz:NM_001356569:exon3:c.T55C:p.Y19H,Ywhaz:NM_011740:exon3:c.T55C:p.Y19H"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.555971332	2	0.7785679	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	39535929	12A2p6	cell line	sgMsh2	39535929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	165	0	0	NA	exonic	Rims2	synonymous SNV	"Rims2:NM_001256383:exon18:c.A3369G:p.G1123G,Rims2:NM_001256382:exon19:c.A3435G:p.G1145G,Rims2:NM_053271:exon19:c.A3309G:p.G1103G"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9997904	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr15	39680995	12A2p6	cell line	sgMsh2	39680995	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	113	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256384:exon5:c.A506G:p.Y169C,Rims2:NM_001256383:exon25:c.A4301G:p.Y1434C,Rims2:NM_001256382:exon26:c.A4367G:p.Y1456C,Rims2:NM_053271:exon26:c.A4241G:p.Y1414C"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9981234	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	41102684	12A2p6	cell line	sgMsh2	41102684	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	343	0	0	NA	exonic	Zfpm2	nonsynonymous SNV	"Zfpm2:NM_001356998:exon7:c.A2405G:p.E802G,Zfpm2:NM_011766:exon8:c.A2564G:p.E855G"	15qB3.1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.754855385	2	0.9978917	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	47696678	12A2p6	cell line	sgMsh2	47696678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	151	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon44:c.A6988G:p.T2330A	15qB3.3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9996217	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	47704293	12A2p6	cell line	sgMsh2	47704293	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	148	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon42:c.C6473T:p.T2158I	15qB3.3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.87237778	1	0.9415768	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	48161084	12A2p6	cell line	sgMsh2	48161084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	273	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon12:c.A1799G:p.Y600C	15qB3.3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.78649603	2	0.9105467	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	54439205	12A2p6	cell line	sgMsh2	54439205	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	287	0	0	NA	exonic	Colec10	nonsynonymous SNV	Colec10:NM_173422:exon3:c.G266T:p.G89V	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.583091884	2	0.942399	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	54600740	12A2p6	cell line	sgMsh2	54600740	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	446	0	0	NA	exonic	Mal2	stoploss	Mal2:NM_178920:exon4:c.T526C:p.X176Q	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.687054003	2	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	54749301	12A2p6	cell line	sgMsh2	54749301	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	127	0	0	NA	exonic	Ccn3	synonymous SNV	Ccn3:NM_010930:exon4:c.A705G:p.V235V	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9989595	TAA	synonymous	NA	NA	NA	NA
M8_p20	chr15	55084094	12A2p6	cell line	sgMsh2	55084094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	94	0	0	NA	exonic	Dscc1	nonsynonymous SNV	"Dscc1:NM_001355594:exon5:c.T689C:p.V230A,Dscc1:NM_183089:exon5:c.T689C:p.V230A"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9958269	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	55149456	12A2p6	cell line	sgMsh2	55149456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	111	0	0	NA	exonic	Deptor	nonsynonymous SNV	"Deptor:NM_001037937:exon2:c.T202C:p.S68P,Deptor:NM_145470:exon2:c.T238C:p.S80P"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9979585	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	57822532	12A2p6	cell line	sgMsh2	57822532	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	57	0	0	NA	exonic	Zhx2	nonsynonymous SNV	Zhx2:NM_199449:exon3:c.G1296T:p.K432N	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	9.96E-07	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	60920331	12A2p6	cell line	sgMsh2	60920331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	145	0	0	NA	exonic	A1bg	synonymous SNV	A1bg:NM_001081067:exon4:c.A447G:p.V149V	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.519810595	3	0.6917279	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr15	61989505	12A2p6	cell line	sgMsh2	61989505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	101	0	0	NA	exonic	Myc	nonsynonymous SNV	"Myc:NM_001177352:exon3:c.A917T:p.Q306L,Myc:NM_001177353:exon3:c.A959T:p.Q320L,Myc:NM_001177354:exon3:c.A917T:p.Q306L,Myc:NM_010849:exon3:c.A962T:p.Q321L"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9968906	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	63824978	12A2p6	cell line	sgMsh2	63824978	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	366	0	0	NA	exonic	Gsdmc2	nonsynonymous SNV	"Gsdmc2:NM_177912:exon12:c.A1343G:p.K448R,Gsdmc2:NM_001168274:exon14:c.A1343G:p.K448R"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	4.46E-08	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	64737449	12A2p6	cell line	sgMsh2	64737449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	136	0	0	NA	exonic	Adcy8	synonymous SNV	"Adcy8:NM_001291903:exon11:c.C2520T:p.L840L,Adcy8:NM_001331075:exon11:c.C2412T:p.L804L,Adcy8:NM_009623:exon12:c.C2610T:p.L870L"	15qD1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.78649603	2	6.14E-06	TGA	synonymous	NA	NA	NA	NA
M8_p20	chr15	66594935	12A2p6	cell line	sgMsh2	66594935	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	188	0	0	NA	exonic	Phf20l1	nonsynonymous SNV	Phf20l1:NM_001081409:exon3:c.C212A:p.P71H	15qD2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.614732529	2	0.9879839	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	71820042	12A2p6	cell line	sgMsh2	71820042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	219	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon55:c.A3928G:p.R1310G	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.863337596	1	0.9462382	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	72007089	12A2p6	cell line	sgMsh2	72007089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	103	0	0	NA	exonic	Col22a1	nonsynonymous SNV	Col22a1:NM_027174:exon3:c.T218C:p.L73P	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.876897873	1	0.9252705	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	75597834	12A2p6	cell line	sgMsh2	75597834	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	105	0	0	NA	exonic	Gpihbp1	nonsynonymous SNV	Gpihbp1:NM_026730:exon4:c.A397G:p.T133A	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9973721	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	75667554	12A2p6	cell line	sgMsh2	75667554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	105	0	0	NA	exonic	Top1mt	nonsynonymous SNV	"Top1mt:NM_001355589:exon8:c.G988A:p.V330M,Top1mt:NM_028404:exon8:c.G991A:p.V331M"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9973721	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	76001903	12A2p6	cell line	sgMsh2	76001903	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	117	0	0	NA	exonic	Fam83h	nonsynonymous SNV	"Fam83h:NM_001168253:exon5:c.G3584C:p.G1195A,Fam83h:NM_134087:exon5:c.G3584C:p.G1195A"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9984143	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	76107194	12A2p6	cell line	sgMsh2	76107194	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	166	0	0	NA	exonic	Eppk1	nonsynonymous SNV	Eppk1:NM_144848:exon2:c.A5486C:p.N1829T	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.999799	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	76173136	12A2p6	cell line	sgMsh2	76173136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	192	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon32:c.G12753T:p.T4251T,Plec:NM_201385:exon32:c.G12639T:p.T4213T,Plec:NM_201386:exon32:c.G12600T:p.T4200T,Plec:NM_201387:exon32:c.G12195T:p.T4065T,Plec:NM_201388:exon32:c.G12195T:p.T4065T,Plec:NM_201389:exon32:c.G13095T:p.T4365T,Plec:NM_201390:exon32:c.G12570T:p.T4190T,Plec:NM_201391:exon32:c.G12666T:p.T4222T,Plec:NM_201392:exon32:c.G12195T:p.T4065T,Plec:NM_201393:exon32:c.G12687T:p.T4229T,Plec:NM_201394:exon32:c.G12666T:p.T4222T,Plec:NM_001163540:exon33:c.G13110T:p.T4370T,Plec:NM_001163549:exon33:c.G12681T:p.T4227T,Plec:NM_001163542:exon34:c.G12804T:p.T4268T,Plec:NM_001164203:exon34:c.G12195T:p.T4065T"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9999329	GCG	synonymous	NA	NA	NA	NA
M8_p20	chr15	76179071	12A2p6	cell line	sgMsh2	76179071	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	25	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon31:c.A6951G:p.A2317A,Plec:NM_201385:exon31:c.A6837G:p.A2279A,Plec:NM_201386:exon31:c.A6798G:p.A2266A,Plec:NM_201387:exon31:c.A6393G:p.A2131A,Plec:NM_201388:exon31:c.A6393G:p.A2131A,Plec:NM_201389:exon31:c.A7293G:p.A2431A,Plec:NM_201390:exon31:c.A6768G:p.A2256A,Plec:NM_201391:exon31:c.A6864G:p.A2288A,Plec:NM_201392:exon31:c.A6393G:p.A2131A,Plec:NM_201393:exon31:c.A6885G:p.A2295A,Plec:NM_201394:exon31:c.A6864G:p.A2288A,Plec:NM_001163540:exon32:c.A7308G:p.A2436A,Plec:NM_001163549:exon32:c.A6879G:p.A2293A,Plec:NM_001163542:exon33:c.A7002G:p.A2334A,Plec:NM_001164203:exon33:c.A6393G:p.A2131A"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.949219347	1	0.09701671	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr15	76185668	12A2p6	cell line	sgMsh2	76185668	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.2	34	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon24:c.C3100T:p.R1034W,Plec:NM_201385:exon24:c.C2986T:p.R996W,Plec:NM_201386:exon24:c.C2947T:p.R983W,Plec:NM_201387:exon24:c.C2542T:p.R848W,Plec:NM_201388:exon24:c.C2542T:p.R848W,Plec:NM_201389:exon24:c.C3442T:p.R1148W,Plec:NM_201390:exon24:c.C2917T:p.R973W,Plec:NM_201391:exon24:c.C3013T:p.R1005W,Plec:NM_201392:exon24:c.C2542T:p.R848W,Plec:NM_201393:exon24:c.C3034T:p.R1012W,Plec:NM_201394:exon24:c.C3013T:p.R1005W,Plec:NM_001163540:exon25:c.C3457T:p.R1153W,Plec:NM_001163549:exon25:c.C3028T:p.R1010W,Plec:NM_001163542:exon26:c.C3151T:p.R1051W,Plec:NM_001164203:exon26:c.C2542T:p.R848W"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.904018425	1	0.8890046	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	76185671	12A2p6	cell line	sgMsh2	76185671	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.2	35	0	0	NA	exonic	Plec	synonymous SNV	"Plec:NM_011117:exon24:c.C3097T:p.L1033L,Plec:NM_201385:exon24:c.C2983T:p.L995L,Plec:NM_201386:exon24:c.C2944T:p.L982L,Plec:NM_201387:exon24:c.C2539T:p.L847L,Plec:NM_201388:exon24:c.C2539T:p.L847L,Plec:NM_201389:exon24:c.C3439T:p.L1147L,Plec:NM_201390:exon24:c.C2914T:p.L972L,Plec:NM_201391:exon24:c.C3010T:p.L1004L,Plec:NM_201392:exon24:c.C2539T:p.L847L,Plec:NM_201393:exon24:c.C3031T:p.L1011L,Plec:NM_201394:exon24:c.C3010T:p.L1004L,Plec:NM_001163540:exon25:c.C3454T:p.L1152L,Plec:NM_001163549:exon25:c.C3025T:p.L1009L,Plec:NM_001163542:exon26:c.C3148T:p.L1050L,Plec:NM_001164203:exon26:c.C2539T:p.L847L"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.904018425	1	0.8907043	AGA	synonymous	NA	NA	NA	NA
M8_p20	chr15	76540539	12A2p6	cell line	sgMsh2	76540539	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	98	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.976delA:p.N326Tfs*32	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.876897873	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M8_p20	chr15	76622252	12A2p6	cell line	sgMsh2	76622252	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	261	0	0	NA	exonic	Vps28	frameshift deletion	"Vps28:NM_001305668:exon10:c.533delA:p.N178Tfs*55,Vps28:NM_025842:exon10:c.647delA:p.N216Tfs*55"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.917578702	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8_p20	chr15	76693045	12A2p6	cell line	sgMsh2	76693045	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	74	0	0	NA	exonic	Ppp1r16a	synonymous SNV	"Ppp1r16a:NM_033371:exon6:c.G612T:p.R204R,Ppp1r16a:NM_001358933:exon7:c.G612T:p.R204R"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.736775017	2	0.6206444	GGG	synonymous	NA	NA	NA	NA
M8_p20	chr15	76694344	12A2p6	cell line	sgMsh2	76694344	C	-	Deletion	Strelka2;Vardict	2	0.2609	23	0	0	NA	exonic	Ppp1r16a	frameshift deletion	"Ppp1r16a:NM_033371:exon11:c.1247delC:p.R420Dfs*7,Ppp1r16a:NM_001358933:exon12:c.1247delC:p.R420Dfs*7"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	NA	NA	GCC	frameshift	C	8	CCCCCCCC	-1
M8_p20	chr15	76725128	12A2p6	cell line	sgMsh2	76725128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	182	0	0	NA	exonic	Arhgap39	nonsynonymous SNV	"Arhgap39:NM_198420:exon11:c.A3085G:p.N1029D,Arhgap39:NM_001168288:exon12:c.A3178G:p.N1060D"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9998977	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	77132796	12A2p6	cell line	sgMsh2	77132796	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	374	0	0	NA	exonic	Rbfox2	nonsynonymous SNV	"Rbfox2:NM_001110828:exon2:c.A173G:p.N58S,Rbfox2:NM_001110829:exon2:c.A173G:p.N58S,Rbfox2:NM_001110830:exon2:c.A173G:p.N58S,Rbfox2:NM_001286417:exon2:c.A173G:p.N58S,Rbfox2:NM_001286418:exon2:c.A173G:p.N58S,Rbfox2:NM_001286419:exon2:c.A173G:p.N58S,Rbfox2:NM_001358771:exon2:c.A173G:p.N58S,Rbfox2:NM_001110827:exon3:c.A377G:p.N126S,Rbfox2:NM_001358770:exon3:c.A239G:p.N80S,Rbfox2:NM_001358772:exon3:c.A239G:p.N80S,Rbfox2:NM_053104:exon3:c.A377G:p.N126S,Rbfox2:NM_175387:exon3:c.A377G:p.N126S"	15qD3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.836217043	1	0.7610998	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	77915789	12A2p6	cell line	sgMsh2	77915789	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	294	0	0	NA	exonic	Txn2	nonsynonymous SNV	Txn2:NM_019913:exon4:c.G456T:p.K152N	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.813616583	2	0.6261268	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	77943257	12A2p6	cell line	sgMsh2	77943257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	71	0	0	NA	exonic	Foxred2	nonsynonymous SNV	"Foxred2:NM_001017983:exon9:c.A1901G:p.Y634C,Foxred2:NM_001168260:exon9:c.A1901G:p.Y634C"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.736775017	2	0.6012054	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	78284413	12A2p6	cell line	sgMsh2	78284413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	151	0	0	NA	exonic	Csf2rb2	synonymous SNV	"Csf2rb2:NM_001287389:exon12:c.T2214C:p.T738T,Csf2rb2:NM_007781:exon14:c.T2541C:p.T847T"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.87237778	1	0.9429771	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr15	78410383	12A2p6	cell line	sgMsh2	78410383	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	63	0	0	NA	exonic	Mpst	nonsynonymous SNV	"Mpst:NM_001162492:exon2:c.A314G:p.Q105R,Mpst:NM_001162493:exon2:c.A314G:p.Q105R,Mpst:NM_138670:exon2:c.A314G:p.Q105R"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.922098794	1	0.9465947	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	78928009	12A2p6	cell line	sgMsh2	78928009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	68	0	0	NA	exonic	Lgals1	nonsynonymous SNV	Lgals1:NM_008495:exon2:c.T49C:p.C17R	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.628292806	2	0.08905957	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	78966859	12A2p6	cell line	sgMsh2	78966859	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	129	0	0	NA	exonic	Triobp	synonymous SNV	"Triobp:NM_001039155:exon8:c.C1212A:p.A404A,Triobp:NM_001039156:exon8:c.C1212A:p.A404A,Triobp:NM_138579:exon8:c.C1212A:p.A404A"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.894978241	1	0.9672128	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr15	78992986	12A2p6	cell line	sgMsh2	78992986	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	78	0	0	NA	exonic	Triobp	nonsynonymous SNV	"Triobp:NM_001024716:exon6:c.G556T:p.G186C,Triobp:NM_138579:exon16:c.G4579T:p.G1527C,Triobp:NM_001039156:exon17:c.G4717T:p.G1573C"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.831696951	1	0.7930547	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	79530443	12A2p6	cell line	sgMsh2	79530443	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	184	0	0	NA	exonic	Ddx17	nonsynonymous SNV	"Ddx17:NM_152806:exon2:c.A382G:p.R128G,Ddx17:NM_001040187:exon13:c.A1522G:p.R508G,Ddx17:NM_199080:exon13:c.A1528G:p.R510G"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9999059	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	80249886	12A2p6	cell line	sgMsh2	80249886	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	50	0	0	NA	exonic	Mief1	synonymous SNV	"Mief1:NM_001357660:exon6:c.T609A:p.T203T,Mief1:NM_178719:exon6:c.T1143A:p.T381T,Mief1:NM_001357659:exon7:c.T1143A:p.T381T"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.754855385	1	0.5946726	CTG	synonymous	GCCA	10	GCCAGCCAGC	NA
M8_p20	chr15	81006801	12A2p6	cell line	sgMsh2	81006801	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.392	154	0	0	NA	exonic	Sgsm3	synonymous SNV	"Sgsm3:NM_001357669:exon6:c.C462T:p.I154I,Sgsm3:NM_134091:exon6:c.C462T:p.I154I"	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9996666	TCG	synonymous	NA	NA	NA	NA
M8_p20	chr15	81407532	12A2p6	cell line	sgMsh2	81407532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	234	0	0	NA	exonic	Dnajb7	synonymous SNV	Dnajb7:NM_021317:exon1:c.T603C:p.N201N	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9999886	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr15	81600948	12A2p6	cell line	sgMsh2	81600948	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	224	0	0	NA	exonic	Ep300	synonymous SNV	Ep300:NM_177821:exon2:c.T135C:p.D45D	15qE1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.949219347	1	0.9996523	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr15	84077532	12A2p6	cell line	sgMsh2	84077532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	464	0	0	NA	exonic	Sult4a1	nonsynonymous SNV	Sult4a1:NM_013873:exon7:c.T793C:p.F265L	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.741295109	2	0.9999731	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	84200650	12A2p6	cell line	sgMsh2	84200650	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	181	0	0	NA	exonic	Samm50	nonsynonymous SNV	Samm50:NM_178614:exon7:c.A581C:p.K194T	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.836217043	1	0.7924601	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	84934916	12A2p6	cell line	sgMsh2	84934916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	216	0	0	NA	exonic	Nup50	synonymous SNV	Nup50:NM_016714:exon5:c.T390C:p.S130S	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	1	1	0.9999756	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr15	85064998	12A2p6	cell line	sgMsh2	85064998	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	255	0	0	NA	exonic	Smc1b	synonymous SNV	Smc1b:NM_080470:exon25:c.A3711G:p.R1237R	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9999953	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr15	85873821	12A2p6	cell line	sgMsh2	85873821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	122	0	0	NA	exonic	Gtse1	synonymous SNV	"Gtse1:NM_013882:exon8:c.C1627T:p.L543L,Gtse1:NM_001168672:exon9:c.C1627T:p.L543L"	15qE2	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.809096491	1	0.6280893	ACT	synonymous	TG	8	TGTGTGTG	NA
M8_p20	chr15	88925633	12A2p6	cell line	sgMsh2	88925633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	146	0	0	NA	exonic	Ttll8	nonsynonymous SNV	"Ttll8:NM_001357736:exon8:c.A365G:p.Y122C,Ttll8:NM_172818:exon8:c.A959G:p.Y320C"	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.836217043	1	9.00E-08	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	88978014	12A2p6	cell line	sgMsh2	88978014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	63	0	0	NA	exonic	Mlc1	nonsynonymous SNV	Mlc1:NM_001364855:exon2:c.A70G:p.T24A	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.904018425	1	0.9292357	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	89262420	12A2p6	cell line	sgMsh2	89262420	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	389	0	0	NA	exonic;splicing	Ppp6r2;Ppp6r2	nonsynonymous SNV	Ppp6r2:NM_027805:exon8:c.T620C:p.V207A	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.754855385	2	0.9992452	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	89355414	12A2p6	cell line	sgMsh2	89355414	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	107	0	0	NA	exonic	Lmf2	synonymous SNV	Lmf2:NM_178919:exon1:c.A36G:p.L12L	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.655413358	2	0.9670098	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr15	89503178	12A2p6	cell line	sgMsh2	89503178	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	256	0	0	NA	exonic	Shank3	nonsynonymous SNV	Shank3:NM_021423:exon4:c.G623T:p.R208L	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.863337596	1	0.9567858	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	90959114	12A2p6	cell line	sgMsh2	90959114	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	286	0	0	NA	exonic	Kif21a	nonsynonymous SNV	"Kif21a:NM_016705:exon24:c.T3365G:p.L1122R,Kif21a:NM_001109041:exon25:c.T3386G:p.L1129R,Kif21a:NM_001109042:exon25:c.T3386G:p.L1129R,Kif21a:NM_001358050:exon25:c.T3386G:p.L1129R,Kif21a:NM_001109040:exon26:c.T3425G:p.L1142R"	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.989900176	1	0.9999973	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	91679865	12A2p6	cell line	sgMsh2	91679865	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	131	0	0	NA	exonic	Lrrk2	nonsynonymous SNV	Lrrk2:NM_025730:exon3:c.T331C:p.W111R	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.809096491	1	0.6109541	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	94527820	12A2p6	cell line	sgMsh2	94527820	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	153	0	0	NA	exonic	Pus7l	nonsynonymous SNV	Pus7l:NM_172437:exon7:c.G1699A:p.D567N	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.863337596	1	0.9211872	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	94561503	12A2p6	cell line	sgMsh2	94561503	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	272	0	0	NA	exonic	Irak4	synonymous SNV	Irak4:NM_029926:exon9:c.A999G:p.A333A	15qE3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.989900176	1	0.9999953	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr15	97691198	12A2p6	cell line	sgMsh2	97691198	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	41	0	0	NA	exonic	Rpap3	nonsynonymous SNV	Rpap3:NM_028003:exon8:c.T854C:p.I285T	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.750335293	1	0.6291912	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	98118219	12A2p6	cell line	sgMsh2	98118219	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	84	0	0	NA	exonic	Pfkm	synonymous SNV	"Pfkm:NM_021514:exon2:c.T123C:p.G41G,Pfkm:NM_001163487:exon3:c.T123C:p.G41G,Pfkm:NM_001163488:exon3:c.T123C:p.G41G,Pfkm:NM_001357688:exon3:c.T123C:p.G41G"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.993651	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr15	98126427	12A2p6	cell line	sgMsh2	98126427	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	183	0	0	NA	exonic	Pfkm	nonsynonymous SNV	"Pfkm:NM_021514:exon13:c.G1315T:p.G439C,Pfkm:NM_001163487:exon14:c.G1315T:p.G439C,Pfkm:NM_001163488:exon14:c.G1315T:p.G439C,Pfkm:NM_001357688:exon14:c.G1315T:p.G439C"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.827176859	1	9.38E-09	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	98289098	12A2p6	cell line	sgMsh2	98289098	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	206	0	0	NA	exonic	Zfp641	nonsynonymous SNV	"Zfp641:NM_001358068:exon6:c.A601T:p.M201L,Zfp641:NM_173769:exon6:c.A643T:p.M215L"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.714174556	2	0.9950377	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	98340551	12A2p6	cell line	sgMsh2	98340551	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	63	0	0	NA	exonic	Olfr284	nonsynonymous SNV	Olfr284:NM_146281:exon1:c.A389G:p.Y130C	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.438448936	3	0.748099	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	98544431	12A2p6	cell line	sgMsh2	98544431	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	287	0	0	NA	exonic	Ccnt1	nonsynonymous SNV	Ccnt1:NM_009833:exon9:c.T955A:p.S319T	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.72321474	2	0.9993238	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	98677271	12A2p6	cell line	sgMsh2	98677271	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	141	0	0	NA	exonic	Rnd1	nonsynonymous SNV	Rnd1:NM_172612:exon1:c.A79G:p.T27A	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.5740517	2	0.8605385	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	99424120	12A2p6	cell line	sgMsh2	99424120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	39	0	0	NA	exonic	Nckap5l	nonsynonymous SNV	Nckap5l:NM_001001884:exon9:c.A3226G:p.K1076E	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9590719	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	100190056	12A2p6	cell line	sgMsh2	100190056	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	206	0	0	NA	exonic	Dip2b	nonsynonymous SNV	"Dip2b:NM_172819:exon19:c.T2168C:p.V723A,Dip2b:NM_001159361:exon24:c.T2870C:p.V957A"	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.854297412	1	0.09137268	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	100580942	12A2p6	cell line	sgMsh2	100580942	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	91	0	0	NA	exonic	Pou6f1	nonsynonymous SNV	Pou6f1:NM_001304965:exon9:c.A1084G:p.I362V	15qF1	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.687054003	2	0.8913396	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr15	102340023	12A2p6	cell line	sgMsh2	102340023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	88	0	0	NA	exonic	Aaas	stopgain	Aaas:NM_153416:exon9:c.C856T:p.R286X	15qF3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	2	1	1	0.9946315	CGG	nonsynonymous	CCT	10	CCTCCTCCTC	NA
M8_p20	chr15	102523225	12A2p6	cell line	sgMsh2	102523225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	130	0	0	NA	exonic	Tarbp2	synonymous SNV	"Tarbp2:NM_001253795:exon7:c.A708G:p.E236E,Tarbp2:NM_009319:exon9:c.A981G:p.E327E"	15qF3	chr15-3279130-102635134	5	3	2	0.9	4.068082914	NA	1	0.91305861	1	0.9823248	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr15	103356947	12A2p6	cell line	sgMsh2	103356947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	247	0	0	NA	exonic	Itga5	synonymous SNV	Itga5:NM_010577:exon5:c.A627G:p.Q209Q	15qF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTT	synonymous	C	5	CCCCC	NA
M8_p20	chr16	3592523	12A2p6	cell line	sgMsh2	3592523	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.219	154	0	0	NA	exonic	Olfr161	frameshift deletion	Olfr161:NM_146860:exon1:c.126delA:p.N43Tfs*45	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8_p20	chr16	3592590	12A2p6	cell line	sgMsh2	3592590	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	199	0	0	NA	exonic	Olfr161	nonsynonymous SNV	Olfr161:NM_146860:exon1:c.A193G:p.S65G	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	4289043	12A2p6	cell line	sgMsh2	4289043	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	61	0	0	NA	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon11:c.A2917T:p.R973W,Adcy9:NM_001291910:exon12:c.A2206T:p.R736W"	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTC	nonsynonymous	GGCC	8	GGCCGGCC	NA
M8_p20	chr16	4611403	12A2p6	cell line	sgMsh2	4611403	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	34	0	0	NA	exonic	Glis2	nonsynonymous SNV	Glis2:NM_031184:exon4:c.T469C:p.C157R	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	4627671	12A2p6	cell line	sgMsh2	4627671	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	102	0	0	NA	exonic	Coro7	nonsynonymous SNV	Coro7:NM_030205:exon27:c.T2702C:p.L901P	16qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	4765048	12A2p6	cell line	sgMsh2	4765048	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	224	0	0	NA	exonic	Hmox2	nonsynonymous SNV	"Hmox2:NM_001136066:exon4:c.A644C:p.K215T,Hmox2:NM_001357050:exon4:c.A728C:p.K243T,Hmox2:NM_001378999:exon4:c.A701C:p.K234T,Hmox2:NM_010443:exon4:c.A644C:p.K215T"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999826	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	5165717	12A2p6	cell line	sgMsh2	5165717	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.368	26	0	0	NA	exonic	Sec14l5	synonymous SNV	Sec14l5:NM_001127725:exon3:c.T192C:p.D64D	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9309981	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr16	8409712	12A2p6	cell line	sgMsh2	8409712	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	102	0	0	NA	exonic	Tmem114	synonymous SNV	Tmem114:NM_029070:exon4:c.T486A:p.V162V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9970186	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr16	8478216	12A2p6	cell line	sgMsh2	8478216	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	57	0	0	NA	exonic	Mettl22	nonsynonymous SNV	Mettl22:NM_146247:exon3:c.A368C:p.N123T	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	9.96E-07	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	9761865	12A2p6	cell line	sgMsh2	9761865	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	294	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.C533A:p.P178H	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999991	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	9992290	12A2p6	cell line	sgMsh2	9992290	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	144	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon3:c.C244A:p.L82I	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994918	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	13784084	12A2p6	cell line	sgMsh2	13784084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	179	0	0	NA	exonic	Rrn3	synonymous SNV	Rrn3:NM_001039521:exon3:c.T201C:p.N67N	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9997138	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr16	13838351	12A2p6	cell line	sgMsh2	13838351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	97	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001291017:exon20:c.A1856G:p.E619G,Pdxdc1:NM_001357225:exon20:c.A1853G:p.E618G,Pdxdc1:NM_053181:exon20:c.A1856G:p.E619G"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9963212	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	13847763	12A2p6	cell line	sgMsh2	13847763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	196	0	0	NA	exonic	Pdxdc1	synonymous SNV	"Pdxdc1:NM_001039533:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001291017:exon14:c.A1167G:p.V389V,Pdxdc1:NM_001357225:exon14:c.A1164G:p.V388V,Pdxdc1:NM_053181:exon14:c.A1167G:p.V389V"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999433	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr16	13854436	12A2p6	cell line	sgMsh2	13854436	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	140	0	0	NA	exonic	Pdxdc1	nonsynonymous SNV	"Pdxdc1:NM_001039533:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001291017:exon13:c.T1099A:p.L367M,Pdxdc1:NM_001357225:exon13:c.T1096A:p.L366M,Pdxdc1:NM_053181:exon13:c.T1099A:p.L367M"	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9853807	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	14127192	12A2p6	cell line	sgMsh2	14127192	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	205	0	0	NA	exonic	Marf1	nonsynonymous SNV	Marf1:NM_001081154:exon20:c.A3812G:p.H1271R	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999612	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	14411456	12A2p6	cell line	sgMsh2	14411456	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	172	0	0	NA	exonic	Abcc1	nonsynonymous SNV	Abcc1:NM_008576:exon9:c.A1051G:p.I351V	16qA1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9920615	TAT	nonsynonymous	GATT	8	GATTGATT	NA
M8_p20	chr16	15672350	12A2p6	cell line	sgMsh2	15672350	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	163	0	0	NA	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon16:c.T1717A:p.L573M	16qA2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997719	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	16673096	12A2p6	cell line	sgMsh2	16673096	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	154	0	0	NA	exonic	Olfr19	nonsynonymous SNV	Olfr19:NM_146335:exon1:c.A884G:p.K295R	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.632812898	2	0.9912946	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	17121015	12A2p6	cell line	sgMsh2	17121015	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	110	0	0	NA	exonic	2610318N02Rik	nonsynonymous SNV	"2610318N02Rik:NM_001358255:exon3:c.T287G:p.M96R,2610318N02Rik:NM_183287:exon4:c.T287G:p.M96R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9978708	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	17210628	12A2p6	cell line	sgMsh2	17210628	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	51	0	0	NA	exonic	Rimbp3	nonsynonymous SNV	Rimbp3:NM_001033338:exon1:c.A1915G:p.S639G	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9749351	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	17301028	12A2p6	cell line	sgMsh2	17301028	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	322	0	0	NA	exonic	Pi4ka	synonymous SNV	"Pi4ka:NM_001001983:exon35:c.A3951C:p.R1317R,Pi4ka:NM_001373955:exon35:c.A4134C:p.R1378R"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999997	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr16	17367514	12A2p6	cell line	sgMsh2	17367514	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	76	0	0	NA	exonic	Pi4ka	nonsynonymous SNV	"Pi4ka:NM_001001983:exon8:c.T721C:p.Y241H,Pi4ka:NM_001373955:exon8:c.T904C:p.Y302H"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9911251	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	17506292	12A2p6	cell line	sgMsh2	17506292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	134	0	0	NA	exonic	Aifm3	nonsynonymous SNV	"Aifm3:NM_001291070:exon18:c.A1715G:p.E572G,Aifm3:NM_175178:exon20:c.A1715G:p.E572G"	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992253	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	17803495	12A2p6	cell line	sgMsh2	17803495	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	71	0	0	NA	exonic	Scarf2	nonsynonymous SNV	Scarf2:NM_153790:exon5:c.A944G:p.Y315C	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.8843566	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	18777393	12A2p6	cell line	sgMsh2	18777393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	71	0	0	NA	exonic	Cldn5	nonsynonymous SNV	Cldn5:NM_013805:exon1:c.T398C:p.L133P	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.8216008	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	18872544	12A2p6	cell line	sgMsh2	18872544	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	59	0	0	NA	exonic	Mrpl40	nonsynonymous SNV	Mrpl40:NM_010922:exon4:c.A415G:p.M139V	16qA3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.809096491	1	0.737178	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	20686853	12A2p6	cell line	sgMsh2	20686853	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	128	0	0	NA	exonic	Eif4g1	nonsynonymous SNV	"Eif4g1:NM_001304432:exon25:c.A3832G:p.I1278V,Eif4g1:NM_145941:exon26:c.A3874G:p.I1292V"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	20687174	12A2p6	cell line	sgMsh2	20687174	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	189	0	0	NA	exonic	Eif4g1	synonymous SNV	"Eif4g1:NM_001304432:exon26:c.T3936C:p.A1312A,Eif4g1:NM_145941:exon27:c.T3978C:p.A1326A"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999238	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr16	20703252	12A2p6	cell line	sgMsh2	20703252	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	93	0	0	NA	exonic	Clcn2	synonymous SNV	Clcn2:NM_009900:exon24:c.G2718A:p.K906K	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9561673	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr16	21220775	12A2p6	cell line	sgMsh2	21220775	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	64	0	0	NA	exonic	Ephb3	nonsynonymous SNV	Ephb3:NM_010143:exon11:c.A2038G:p.I680V	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9853621	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	21766387	12A2p6	cell line	sgMsh2	21766387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	158	0	0	NA	exonic	Ehhadh	nonsynonymous SNV	Ehhadh:NM_023737:exon6:c.A743G:p.K248R	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	21921702	12A2p6	cell line	sgMsh2	21921702	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	57	0	0	NA	exonic	Map3k13	nonsynonymous SNV	Map3k13:NM_172821:exon10:c.A1778G:p.N593S	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	9.96E-07	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	22961382	12A2p6	cell line	sgMsh2	22961382	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	133	0	0	NA	exonic	Hrg	nonsynonymous SNV	Hrg:NM_053176:exon7:c.A1409G:p.Y470C	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.999192	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	23328387	12A2p6	cell line	sgMsh2	23328387	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	191	0	0	NA	exonic	St6gal1	nonsynonymous SNV	"St6gal1:NM_001252506:exon4:c.A644C:p.N215T,St6gal1:NM_001252505:exon5:c.A644C:p.N215T,St6gal1:NM_145933:exon5:c.A644C:p.N215T"	16qB1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.99993	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	32625064	12A2p6	cell line	sgMsh2	32625064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	77	0	0	NA	exonic	Tfrc	nonsynonymous SNV	"Tfrc:NM_001357298:exon16:c.A1685G:p.E562G,Tfrc:NM_011638:exon16:c.A1685G:p.E562G"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9202209	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	32761279	12A2p6	cell line	sgMsh2	32761279	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	156	0	0	NA	exonic	Muc4	nonsynonymous SNV	Muc4:NM_080457:exon8:c.C7517G:p.A2506G	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996936	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	32794602	12A2p6	cell line	sgMsh2	32794602	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	301	0	0	NA	exonic	Muc20	nonsynonymous SNV	"Muc20:NM_001145874:exon2:c.T404C:p.I135T,Muc20:NM_146071:exon2:c.T404C:p.I135T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999993	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	32961669	12A2p6	cell line	sgMsh2	32961669	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	238	0	0	NA	exonic	Lrch3	nonsynonymous SNV	"Lrch3:NM_001081255:exon6:c.A812G:p.Y271C,Lrch3:NM_001310672:exon6:c.A812G:p.Y271C,Lrch3:NM_001310673:exon6:c.A812G:p.Y271C,Lrch3:NM_001310674:exon6:c.A812G:p.Y271C"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999904	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	33434931	12A2p6	cell line	sgMsh2	33434931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	92	0	0	NA	exonic	Zfp148	nonsynonymous SNV	"Zfp148:NM_001358569:exon4:c.A290G:p.H97R,Zfp148:NM_001358570:exon4:c.A290G:p.H97R,Zfp148:NM_011749:exon4:c.A290G:p.H97R"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.655413358	2	0.9383444	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	34203921	12A2p6	cell line	sgMsh2	34203921	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	98	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon23:c.A3761C:p.K1254T,Kalrn:NM_177357:exon23:c.A3761C:p.K1254T"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9964726	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	35839314	12A2p6	cell line	sgMsh2	35839314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	152	0	0	NA	exonic	Parp14	nonsynonymous SNV	Parp14:NM_001039530:exon15:c.A4937G:p.N1646S	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	36615247	12A2p6	cell line	sgMsh2	36615247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	215	0	0	NA	exonic	Cd86	synonymous SNV	Cd86:NM_019388:exon5:c.T807C:p.N269N	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999746	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr16	36928691	12A2p6	cell line	sgMsh2	36928691	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	83	0	0	NA	exonic	Golgb1	nonsynonymous SNV	Golgb1:NM_030035:exon19:c.A9299G:p.H3100R	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9801829	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	37074043	12A2p6	cell line	sgMsh2	37074043	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	139	0	0	NA	exonic	Polq	nonsynonymous SNV	"Polq:NM_001159369:exon15:c.A5376C:p.Q1792H,Polq:NM_029977:exon20:c.A6213C:p.Q2071H"	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993725	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	38304793	12A2p6	cell line	sgMsh2	38304793	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	45	0	0	NA	exonic	Maats1	nonsynonymous SNV	Maats1:NM_001081025:exon14:c.A1885G:p.M629V	16qB3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9679424	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	43898221	12A2p6	cell line	sgMsh2	43898221	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	403	0	0	NA	exonic	Ccdc191	synonymous SNV	Ccdc191:NM_027801:exon2:c.C180A:p.V60V	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-08	TCT	synonymous	NA	NA	NA	NA
M8_p20	chr16	44273747	12A2p6	cell line	sgMsh2	44273747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	240	0	0	NA	exonic	Sidt1	nonsynonymous SNV	Sidt1:NM_198034:exon10:c.A1039C:p.S347R	16qB4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999911	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	48998990	12A2p6	cell line	sgMsh2	48998990	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	439	0	0	NA	exonic	Cip2a	nonsynonymous SNV	Cip2a:NM_172616:exon3:c.A286G:p.I96V	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	3.00E-09	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	49078634	12A2p6	cell line	sgMsh2	49078634	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	250	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon7:c.T621A:p.N207K	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999942	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	49173066	12A2p6	cell line	sgMsh2	49173066	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	54	0	0	NA	exonic	Myh15	nonsynonymous SNV	Myh15:NM_001166210:exon35:c.G5063A:p.R1688H	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	50590780	12A2p6	cell line	sgMsh2	50590780	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	150	0	0	NA	exonic	Ccdc54	nonsynonymous SNV	Ccdc54:NM_027046:exon1:c.A122C:p.Y41S	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996054	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	52305722	12A2p6	cell line	sgMsh2	52305722	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	251	0	0	NA	exonic	Alcam	synonymous SNV	"Alcam:NM_001331110:exon3:c.T231C:p.S77S,Alcam:NM_009655:exon3:c.T231C:p.S77S"	16qB5	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999944	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr16	56261633	12A2p6	cell line	sgMsh2	56261633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.335	243	0	0	NA	exonic	Impg2	nonsynonymous SNV	Impg2:NM_174876:exon15:c.C2927A:p.P976H	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999922	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	56691069	12A2p6	cell line	sgMsh2	56691069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	86	0	0	NA	exonic	Tfg	nonsynonymous SNV	"Tfg:NM_001252443:exon7:c.C749A:p.P250H,Tfg:NM_001357125:exon8:c.C884A:p.P295H,Tfg:NM_019678:exon8:c.C896A:p.P299H"	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9941616	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	57133247	12A2p6	cell line	sgMsh2	57133247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	191	0	0	NA	exonic	Tomm70a	synonymous SNV	Tomm70a:NM_138599:exon2:c.A504G:p.Q168Q	16qC1.1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	0.6037731	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr16	58797800	12A2p6	cell line	sgMsh2	58797800	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	297	0	0	NA	exonic	Olfr173	synonymous SNV	Olfr173:NM_147000:exon1:c.A45C:p.T15T	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999897	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr16	58915901	12A2p6	cell line	sgMsh2	58915901	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.245	190	0	0	NA	exonic	Olfr180	frameshift deletion	Olfr180:NM_001011662:exon2:c.739delT:p.S247Lfs*30	16qC1.2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8_p20	chr16	58926453	12A2p6	cell line	sgMsh2	58926453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	334	0	0	NA	exonic	Olfr181	nonsynonymous SNV	Olfr181:NM_146999:exon2:c.A117G:p.I39M	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	59215763	12A2p6	cell line	sgMsh2	59215763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	153	0	0	NA	exonic	Olfr199	synonymous SNV	Olfr199:NM_207550:exon1:c.T849C:p.P283P	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9996523	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr16	59522178	12A2p6	cell line	sgMsh2	59522178	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	80	0	0	NA	exonic	Crybg3	nonsynonymous SNV	Crybg3:NM_174848:exon17:c.A8093G:p.Y2698C	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.836217043	1	0.8075921	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	59543197	12A2p6	cell line	sgMsh2	59543197	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	48	0	0	NA	exonic	Crybg3	frameshift deletion	Crybg3:NM_174848:exon9:c.7323delA:p.K2441Nfs*10	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8_p20	chr16	63602261	12A2p6	cell line	sgMsh2	63602261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	108	0	0	NA	exonic	Epha3	synonymous SNV	"Epha3:NM_001362452:exon9:c.T1762C:p.L588L,Epha3:NM_010140:exon9:c.T1765C:p.L589L"	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr16	64926927	12A2p6	cell line	sgMsh2	64926927	T	-	Deletion	Strelka2;Vardict	2	0.2045	88	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.92435884	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr16	70491938	12A2p6	cell line	sgMsh2	70491938	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	449	0	0	NA	exonic	Gbe1	nonsynonymous SNV	Gbe1:NM_028803:exon11:c.T1340C:p.L447P	16qC2	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	2.31E-09	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	73916216	12A2p6	cell line	sgMsh2	73916216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	47	0	0	NA	exonic	Robo2	synonymous SNV	"Robo2:NM_001358491:exon24:c.A3720G:p.T1240T,Robo2:NM_001358492:exon24:c.A3720G:p.T1240T,Robo2:NM_001358494:exon24:c.A3651G:p.T1217T,Robo2:NM_175549:exon24:c.A3765G:p.T1255T,Robo2:NM_001358493:exon25:c.A3846G:p.T1282T"	16qC3.1	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9704615	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr16	87409407	12A2p6	cell line	sgMsh2	87409407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	90	0	0	NA	exonic	Ltn1	synonymous SNV	Ltn1:NM_001081068:exon15:c.T2784C:p.G928G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.754855385	2	0.622819	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr16	87494405	12A2p6	cell line	sgMsh2	87494405	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	140	0	0	NA	exonic	Cct8	nonsynonymous SNV	Cct8:NM_009840:exon2:c.C83T:p.A28V	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993984	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	87719646	12A2p6	cell line	sgMsh2	87719646	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	119	0	0	NA	exonic	Bach1	nonsynonymous SNV	Bach1:NM_007520:exon3:c.G1074T:p.Q358H	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9973481	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	88671070	12A2p6	cell line	sgMsh2	88671070	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	157	0	0	NA	exonic	Krtap27-1	synonymous SNV	Krtap27-1:NM_001163105:exon1:c.T585C:p.G195G	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997063	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr16	90251897	12A2p6	cell line	sgMsh2	90251897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	226	0	0	NA	exonic	Scaf4	nonsynonymous SNV	"Scaf4:NM_001346799:exon9:c.A1028G:p.Q343R,Scaf4:NM_001358402:exon9:c.A1028G:p.Q343R,Scaf4:NM_178923:exon9:c.A1028G:p.Q343R"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.999984	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	90767027	12A2p6	cell line	sgMsh2	90767027	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	73	0	0	NA	exonic	Urb1	frameshift deletion	Urb1:NM_029497:exon29:c.4847delT:p.L1616Rfs*36	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAG	frameshift	GCA	8	GCAGCAGC	-1
M8_p20	chr16	90964348	12A2p6	cell line	sgMsh2	90964348	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	243	0	0	NA	exonic	Synj1	synonymous SNV	"Synj1:NM_001045515:exon17:c.C2010T:p.G670G,Synj1:NM_001164483:exon17:c.C2130T:p.G710G"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999922	CGC	synonymous	NA	NA	NA	NA
M8_p20	chr16	91419434	12A2p6	cell line	sgMsh2	91419434	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	216	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon5:c.A607C:p.T203P	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	0.9979566	AAC	nonsynonymous	CAGAA	13	CAGAACAGAACAG	NA
M8_p20	chr16	91561622	12A2p6	cell line	sgMsh2	91561622	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.2	29	0	0	NA	exonic	Ifngr2	nonsynonymous SNV	Ifngr2:NM_008338:exon6:c.T709G:p.S237A	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.8800628	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	91656548	12A2p6	cell line	sgMsh2	91656548	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	345	0	0	NA	exonic	Son	nonsynonymous SNV	"Son:NM_019973:exon3:c.T2182C:p.S728P,Son:NM_178880:exon3:c.T2182C:p.S728P"	16qC3.3	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9999998	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	93793119	12A2p6	cell line	sgMsh2	93793119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	49	0	0	NA	exonic	Dop1b	synonymous SNV	"Dop1b:NM_001357118:exon26:c.T5160C:p.G1720G,Dop1b:NM_027293:exon27:c.T5514C:p.G1838G"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	0.664453543	2	0.6620034	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr16	94762473	12A2p6	cell line	sgMsh2	94762473	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.581	129	0	0	NA	exonic	Kcnj6	nonsynonymous SNV	"Kcnj6:NM_001025584:exon4:c.A1165C:p.S389R,Kcnj6:NM_010606:exon4:c.A1165C:p.S389R"	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	2	1	1	0.9990436	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr16	96175756	12A2p6	cell line	sgMsh2	96175756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	106	0	0	NA	exonic	Lca5l	nonsynonymous SNV	Lca5l:NM_001001492:exon5:c.A849G:p.I283M	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	1	0.9974804	GTA	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr16	97556652	12A2p6	cell line	sgMsh2	97556652	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.242	187	0	0	NA	exonic	Mx2	frameshift deletion	Mx2:NM_013606:exon12:c.1462delT:p.Y489Ifs*15	16qC4	chr16-4630421-97886207	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
M8_p20	chr17	3437282	12A2p6	cell line	sgMsh2	3437282	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	76	0	0	NA	exonic	Tiam2	nonsynonymous SNV	"Tiam2:NM_001122998:exon7:c.C2077T:p.R693C,Tiam2:NM_011878:exon7:c.C2077T:p.R693C"	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	1	1	0.9911251	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	5313920	12A2p6	cell line	sgMsh2	5313920	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	168	0	0	NA	exonic	Arid1b	nonsynonymous SNV	Arid1b:NM_001085355:exon11:c.A3008C:p.N1003T	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998153	AAC	nonsynonymous	CCTG	8	CCTGCCTG	NA
M8_p20	chr17	6289041	12A2p6	cell line	sgMsh2	6289041	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	476	0	0	NA	exonic	Tmem181a	nonsynonymous SNV	"Tmem181a:NM_001033178:exon4:c.T224G:p.L75R,Tmem181a:NM_001357884:exon4:c.T347G:p.L116R"	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	0.804576399	2	0.9479624	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	12249598	12A2p6	cell line	sgMsh2	12249598	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	169	0	0	NA	exonic	Map3k4	nonsynonymous SNV	"Map3k4:NM_001357722:exon12:c.T3007C:p.F1003L,Map3k4:NM_011948:exon12:c.T3007C:p.F1003L"	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998229	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	13225949	12A2p6	cell line	sgMsh2	13225949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	986	0	0	NA	exonic	Smok2a	nonsynonymous SNV	Smok2a:NM_013741:exon2:c.T412C:p.C138R	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	0.533370871	3	0.9999832	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	13226128	12A2p6	cell line	sgMsh2	13226128	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	1130	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C591A:p.P197P	17qA1	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	0.524330687	3	0.9999999	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr17	14196070	12A2p6	cell line	sgMsh2	14196070	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	56	0	0	NA	exonic	Dact2	nonsynonymous SNV	Dact2:NM_172826:exon4:c.A1867G:p.R623G	17qA2	chr17-3079405-14988397	4	2	2	0.9	4.068082914	NA	1	1	1	0.9796055	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	17574040	12A2p6	cell line	sgMsh2	17574040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	135	0	0	NA	exonic	Lnpep	synonymous SNV	Lnpep:NM_172827:exon4:c.T1038C:p.D346D	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9990945	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr17	17733638	12A2p6	cell line	sgMsh2	17733638	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	273	0	0	NA	exonic	Vmn2r90	nonsynonymous SNV	Vmn2r90:NM_001104539:exon6:c.A2063C:p.N688T	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999978	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	18106154	12A2p6	cell line	sgMsh2	18106154	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.199	244	0	0	NA	exonic	Vmn2r91	frameshift deletion	"Vmn2r91:NM_001104540:exon3:c.700delT:p.F234Lfs*11,Vmn2r91:NM_001385124:exon3:c.700delT:p.F234Lfs*11"	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.899498333	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr17	18185134	12A2p6	cell line	sgMsh2	18185134	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	135	0	0	NA	exonic	Vmn2r92	frameshift deletion	"Vmn2r92:NM_001104541:exon6:c.2539delA:p.T850Hfs*11,Vmn2r92:NM_001385105:exon6:c.2536delA:p.T849Hfs*11"	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
M8_p20	chr17	18244322	12A2p6	cell line	sgMsh2	18244322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	602	0	0	NA	exonic	Vmn2r94	nonsynonymous SNV	Vmn2r94:NM_001104543:exon6:c.A1705G:p.R569G	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	19053653	12A2p6	cell line	sgMsh2	19053653	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	273	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon1:c.C161A:p.S54Y	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999978	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	19065829	12A2p6	cell line	sgMsh2	19065829	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.248	399	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon3:c.G588T:p.K196N	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	1.18E-08	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	19521481	12A2p6	cell line	sgMsh2	19521481	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	395	0	0	NA	exonic	Vmn2r100	stopgain	Vmn2r100:NM_001104562:exon2:c.G454T:p.G152X	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.759375477	2	0.9989442	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	19694339	12A2p6	cell line	sgMsh2	19694339	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	759	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.A2165T:p.D722V	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	19773530	12A2p6	cell line	sgMsh2	19773530	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.187	159	0	0	NA	exonic	Vmn2r103	frameshift insertion	Vmn2r103:NM_001104565:exon1:c.169dupA:p.M58Nfs*3	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.845257228	NA	NA	AGA	frameshift	NA	NA	NA	1
M8_p20	chr17	19794051	12A2p6	cell line	sgMsh2	19794051	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.249	647	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.T1104C:p.C368C	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr17	20042338	12A2p6	cell line	sgMsh2	20042338	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	245	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon3:c.T529C:p.F177L	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.813616583	2	0.5444045	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	20227383	12A2p6	cell line	sgMsh2	20227383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	252	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1172C:p.E391A	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999947	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	20227393	12A2p6	cell line	sgMsh2	20227393	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	248	0	0	NA	exonic	Vmn2r105	nonsynonymous SNV	Vmn2r105:NM_001369232:exon3:c.A1162G:p.I388V	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999937	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	20541376	12A2p6	cell line	sgMsh2	20541376	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	129	0	0	NA	exonic	Vmn2r109	nonsynonymous SNV	Vmn2r109:NM_001104571:exon6:c.A1718G:p.K573R	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990436	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	20776785	12A2p6	cell line	sgMsh2	20776785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	285	0	0	NA	exonic	Vmn1r228	nonsynonymous SNV	Vmn1r228:NM_134192:exon1:c.T470C:p.F157S	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999987	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	20994614	12A2p6	cell line	sgMsh2	20994614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	248	0	0	NA	exonic	Vmn1r233	nonsynonymous SNV	Vmn1r233:NM_134202:exon1:c.A73G:p.I25V	17qA3.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9999909	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	22559118	12A2p6	cell line	sgMsh2	22559118	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	630	0	0	NA	exonic	Vmn2r111	nonsynonymous SNV	Vmn2r111:NM_001104573:exon5:c.T1579A:p.F527I	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.736775017	2	0.9999998	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	23640185	12A2p6	cell line	sgMsh2	23640185	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	94	0	0	NA	exonic	Mmp25	nonsynonymous SNV	Mmp25:NM_001033339:exon3:c.T487C:p.Y163H	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9958269	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24392943	12A2p6	cell line	sgMsh2	24392943	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	223	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon18:c.A2470G:p.S824G,Abca3:NM_013855:exon19:c.A2470G:p.S824G"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999818	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24402372	12A2p6	cell line	sgMsh2	24402372	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	87	0	0	NA	exonic	Abca3	nonsynonymous SNV	"Abca3:NM_001039581:exon25:c.A3970G:p.I1324V,Abca3:NM_013855:exon26:c.A3970G:p.I1324V"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	0.9675549	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24505364	12A2p6	cell line	sgMsh2	24505364	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	34	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.T2912C:p.V971A,Caskin1:NM_027937:exon18:c.T3125C:p.V1042A"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.8890046	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24717463	12A2p6	cell line	sgMsh2	24717463	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	176	0	0	NA	exonic	Rnf151	nonsynonymous SNV	Rnf151:NM_026205:exon2:c.G149T:p.R50I	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998682	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24819872	12A2p6	cell line	sgMsh2	24819872	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	156	0	0	NA	exonic	Meiob	nonsynonymous SNV	Meiob:NM_029197:exon5:c.T260C:p.V87A	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996936	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24890310	12A2p6	cell line	sgMsh2	24890310	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	129	0	0	NA	exonic	Spsb3	nonsynonymous SNV	"Spsb3:NM_001163750:exon3:c.T592C:p.Y198H,Spsb3:NM_001163751:exon3:c.T247C:p.Y83H,Spsb3:NM_001374602:exon3:c.T154C:p.Y52H,Spsb3:NM_027141:exon3:c.T259C:p.Y87H"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990436	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	24895169	12A2p6	cell line	sgMsh2	24895169	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	60	0	0	NA	exonic	Mrps34	nonsynonymous SNV	Mrps34:NM_023260:exon1:c.T2G:p.M1R	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9827178	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	25491505	12A2p6	cell line	sgMsh2	25491505	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	108	0	0	NA	exonic	Sstr5	nonsynonymous SNV	"Sstr5:NM_001191008:exon2:c.T749A:p.V250E,Sstr5:NM_011425:exon3:c.T749A:p.V250E"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	CAC	nonsynonymous	ACC	23	CACCAGCACCACTACCACCACCA	NA
M8_p20	chr17	26117514	12A2p6	cell line	sgMsh2	26117514	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	112	0	0	NA	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon4:c.T605C:p.L202P	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	26198829	12A2p6	cell line	sgMsh2	26198829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	57	0	0	NA	exonic	Pdia2	nonsynonymous SNV	Pdia2:NM_001081070:exon1:c.T205C:p.F69L	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	9.96E-07	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	27029860	12A2p6	cell line	sgMsh2	27029860	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	32	0	0	NA	exonic	Ggnbp1	synonymous SNV	Ggnbp1:NM_027544:exon1:c.A402G:p.R134R	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	9.90E-05	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr17	27087174	12A2p6	cell line	sgMsh2	27087174	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	112	0	0	NA	exonic	Itpr3	nonsynonymous SNV	Itpr3:NM_080553:exon6:c.A557C:p.N186T	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8586869	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28071639	12A2p6	cell line	sgMsh2	28071639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	170	0	0	NA	exonic	Tcp11	nonsynonymous SNV	"Tcp11:NM_001374620:exon4:c.A406G:p.N136D,Tcp11:NM_001085555:exon5:c.A508G:p.N170D,Tcp11:NM_001357681:exon5:c.A508G:p.N170D,Tcp11:NM_001374621:exon5:c.A385G:p.N129D,Tcp11:NM_013687:exon5:c.A745G:p.N249D"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998302	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28167171	12A2p6	cell line	sgMsh2	28167171	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	83	0	0	NA	exonic	Scube3	nonsynonymous SNV	Scube3:NM_001004366:exon18:c.T2385A:p.S795R	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9933792	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28227857	12A2p6	cell line	sgMsh2	28227857	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	87	0	0	NA	exonic	Def6	nonsynonymous SNV	Def6:NM_027185:exon10:c.T1632A:p.N544K	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.822224	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28298876	12A2p6	cell line	sgMsh2	28298876	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	68	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon7:c.A917C:p.N306T	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.772935754	1	0.000778963	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28602804	12A2p6	cell line	sgMsh2	28602804	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	115	0	0	NA	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon8:c.C635T:p.T212M	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	CGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28661885	12A2p6	cell line	sgMsh2	28661885	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	199	0	0	NA	exonic	Slc26a8	nonsynonymous SNV	Slc26a8:NM_001290320:exon7:c.T916A:p.F306I	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	28824046	12A2p6	cell line	sgMsh2	28824046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	259	0	0	NA	exonic	Brpf3	synonymous SNV	Brpf3:NM_001081315:exon9:c.A3060G:p.G1020G	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9997651	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr17	29301412	12A2p6	cell line	sgMsh2	29301412	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	174	0	0	NA	exonic	BC004004	nonsynonymous SNV	"BC004004:NM_001379078:exon8:c.T1030A:p.L344M,BC004004:NM_001379077:exon9:c.T1009A:p.L337M,BC004004:NM_030561:exon9:c.T1009A:p.L337M"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998566	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	29379040	12A2p6	cell line	sgMsh2	29379040	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	29	0	0	NA	exonic	Fgd2	nonsynonymous SNV	"Fgd2:NM_001159538:exon16:c.G1951A:p.E651K,Fgd2:NM_013710:exon16:c.G1948A:p.E650K"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9251266	CGA	nonsynonymous	GAA	8	GAAGAAGA	NA
M8_p20	chr17	30513577	12A2p6	cell line	sgMsh2	30513577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	171	0	0	NA	exonic	Btbd9	nonsynonymous SNV	"Btbd9:NM_027060:exon6:c.A1133G:p.Y378C,Btbd9:NM_172618:exon6:c.A1133G:p.Y378C"	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.632812898	2	0.9941441	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	30761096	12A2p6	cell line	sgMsh2	30761096	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.197	140	0	0	NA	exonic	Dnah8	frameshift deletion	Dnah8:NM_013811:exon61:c.9103delT:p.F3036Lfs*4	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.890458149	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8_p20	chr17	30782432	12A2p6	cell line	sgMsh2	30782432	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.137	110	0	0	NA	exonic	Dnah8	nonsynonymous SNV	Dnah8:NM_013811:exon71:c.T10645A:p.L3549I	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.619252621	2	0.9625062	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	30908131	12A2p6	cell line	sgMsh2	30908131	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	88	0	0	NA	exonic	Glp1r	nonsynonymous SNV	Glp1r:NM_021332:exon2:c.T89C:p.V30A	17qA3.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.822656767	1	0.7526491	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	31590740	12A2p6	cell line	sgMsh2	31590740	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	202	0	0	NA	exonic	Pknox1	nonsynonymous SNV	Pknox1:NM_016670:exon4:c.C317T:p.P106L	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.999956	CCC	nonsynonymous	CTT	8	CTTCTTCT	NA
M8_p20	chr17	32199153	12A2p6	cell line	sgMsh2	32199153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	59	0	0	NA	exonic	Brd4	nonsynonymous SNV	"Brd4:NM_001286630:exon16:c.A3299G:p.K1100R,Brd4:NM_020508:exon16:c.A3296G:p.K1099R"	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.750335293	1	0.5287042	CTT	nonsynonymous	GCCCT	10	GCCCTGCCCT	NA
M8_p20	chr17	32774731	12A2p6	cell line	sgMsh2	32774731	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	149	0	0	NA	exonic	Zfp871	nonsynonymous SNV	"Zfp871:NM_001346705:exon4:c.A1412G:p.K471R,Zfp871:NM_172458:exon4:c.A1469G:p.K490R"	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.998517	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	32941057	12A2p6	cell line	sgMsh2	32941057	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	77	0	0	NA	exonic	Cyp4f13	synonymous SNV	Cyp4f13:NM_130882:exon3:c.A342C:p.S114S	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9836148	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr17	33918140	12A2p6	cell line	sgMsh2	33918140	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	36	0	0	NA	exonic	Zbtb22	synonymous SNV	Zbtb22:NM_020625:exon2:c.T1258C:p.L420L	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9537896	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr17	34568846	12A2p6	cell line	sgMsh2	34568846	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.141	30	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon7:c.A1280C:p.H427P	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.63733299	2	0.4981699	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	34571761	12A2p6	cell line	sgMsh2	34571761	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	112	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.T1526C:p.V509A	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	34571764	12A2p6	cell line	sgMsh2	34571764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	113	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon9:c.A1529G:p.E510G	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9981234	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	34584597	12A2p6	cell line	sgMsh2	34584597	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	23	0	0	NA	exonic	Notch4	nonsynonymous SNV	Notch4:NM_010929:exon24:c.A4489T:p.R1497W	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9222463	GAG	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr17	34672718	12A2p6	cell line	sgMsh2	34672718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.373	85	0	0	NA	exonic	Tnxb	synonymous SNV	Tnxb:NM_031176:exon2:c.C2034A:p.G678G	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9939116	GCT	synonymous	G	5	GGGGG	NA
M8_p20	chr17	34685608	12A2p6	cell line	sgMsh2	34685608	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	28	0	0	NA	exonic	Tnxb	nonsynonymous SNV	Tnxb:NM_031176:exon8:c.T3346C:p.S1116P	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.899498333	1	0.8745296	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	34734451	12A2p6	cell line	sgMsh2	34734451	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	235	0	0	NA	exonic	C4b	synonymous SNV	C4b:NM_009780:exon24:c.T3057C:p.T1019T	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.745815201	2	0.9866688	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr17	34895834	12A2p6	cell line	sgMsh2	34895834	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	46	0	0	NA	exonic	Zbtb12	synonymous SNV	Zbtb12:NM_198886:exon2:c.T594C:p.D198D	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.969227	ATG	synonymous	GAG	14	GAGGAGGATGAGGA	NA
M8_p20	chr17	34896489	12A2p6	cell line	sgMsh2	34896489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	73	0	0	NA	exonic	Zbtb12	nonsynonymous SNV	Zbtb12:NM_198886:exon2:c.T1249C:p.C417R	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	35263518	12A2p6	cell line	sgMsh2	35263518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	117	0	0	NA	exonic	H2-D1;H2-L	synonymous SNV	"H2-D1:NM_010380:exon2:c.G213A:p.P71P,H2-L:NM_001267808:exon5:c.G201A:p.P67P"	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9984143	CGC	synonymous	NA	NA	NA	NA
M8_p20	chr17	35657256	12A2p6	cell line	sgMsh2	35657256	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	68	0	0	NA	exonic	Vars2	synonymous SNV	Vars2:NM_175137:exon26:c.A2739G:p.A913A	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9118063	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr17	35847740	12A2p6	cell line	sgMsh2	35847740	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	55	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon5:c.A1011G:p.L337L	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9787452	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr17	35852963	12A2p6	cell line	sgMsh2	35852963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	87	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon10:c.A3402G:p.P1134P	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9944015	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr17	35910913	12A2p6	cell line	sgMsh2	35910913	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	60	0	0	NA	exonic	Mrps18b	nonsynonymous SNV	Mrps18b:NM_001361454:exon5:c.T392G:p.L131R	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9827178	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	36168119	12A2p6	cell line	sgMsh2	36168119	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	45	0	0	NA	exonic	Gm8909	synonymous SNV	Gm8909:NM_001081032:exon2:c.C153T:p.G51G	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9679424	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr17	36898450	12A2p6	cell line	sgMsh2	36898450	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	161	0	0	NA	exonic	Trim31	nonsynonymous SNV	Trim31:NM_146077:exon1:c.C97T:p.H33Y	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997518	GCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	37020584	12A2p6	cell line	sgMsh2	37020584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	153	0	0	NA	exonic	Mog	nonsynonymous SNV	Mog:NM_010814:exon2:c.A223G:p.R75G	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996523	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	37563942	12A2p6	cell line	sgMsh2	37563942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.234	531	0	0	NA	exonic	Olfr112	nonsynonymous SNV	Olfr112:NM_001013575:exon5:c.A368G:p.Y123C	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	1.04E-09	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	37701005	12A2p6	cell line	sgMsh2	37701005	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.237	482	0	0	NA	exonic	Olfr119	frameshift deletion	Olfr119:NM_001011830:exon2:c.334delT:p.F113Lfs*2	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr17	37751964	12A2p6	cell line	sgMsh2	37751964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	618	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.A109G:p.I37V	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.813616583	2	0.9397773	CAT	nonsynonymous	TCC	8	TCCTCCTC	NA
M8_p20	chr17	38068086	12A2p6	cell line	sgMsh2	38068086	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.289	165	0	0	NA	exonic	Olfr130	frameshift insertion	Olfr130:NM_146487:exon1:c.915dupA:p.N307Kfs*1	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	AGA	frameshift	A	5	AAAAA	1
M8_p20	chr17	38082114	12A2p6	cell line	sgMsh2	38082114	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	254	0	0	NA	exonic	Olfr131	nonsynonymous SNV	Olfr131:NM_146867:exon1:c.T863C:p.M288T	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999951	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	38304994	12A2p6	cell line	sgMsh2	38304994	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	199	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.A466G:p.T156A	17qB1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	40228805	12A2p6	cell line	sgMsh2	40228805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	471	0	0	NA	exonic	Crisp3	nonsynonymous SNV	Crisp3:NM_009639:exon6:c.T500C:p.V167A	17qB2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	1.08E-08	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	40904776	12A2p6	cell line	sgMsh2	40904776	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.156	82	0	0	NA	exonic	Glyatl3	nonsynonymous SNV	Glyatl3:NM_001145060:exon5:c.A838C:p.T280P	17qB2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.705134372	2	0.7987934	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	42592968	12A2p6	cell line	sgMsh2	42592968	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	55	0	0	NA	exonic	Opn5	frameshift deletion	Opn5:NM_181753:exon4:c.475delT:p.Y159Mfs*42	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8_p20	chr17	42667281	12A2p6	cell line	sgMsh2	42667281	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	344	0	0	NA	exonic	Adgrf4	synonymous SNV	"Adgrf4:NM_001289499:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289500:exon6:c.C1170A:p.S390S,Adgrf4:NM_001289501:exon6:c.C1170A:p.S390S,Adgrf4:NM_030067:exon6:c.C1170A:p.S390S"	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.899498333	1	0.9990115	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr17	42798604	12A2p6	cell line	sgMsh2	42798604	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	292	0	0	NA	exonic	Cd2ap	synonymous SNV	Cd2ap:NM_009847:exon17:c.T1863C:p.S621S	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.999951	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr17	43482264	12A2p6	cell line	sgMsh2	43482264	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	54	0	0	NA	exonic	Mep1a	nonsynonymous SNV	Mep1a:NM_008585:exon10:c.A1087T:p.T363S	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	45038166	12A2p6	cell line	sgMsh2	45038166	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	224	0	0	NA	exonic	Supt3	nonsynonymous SNV	Supt3:NM_178652:exon9:c.T784C:p.Y262H	17qB3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999826	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	46147877	12A2p6	cell line	sgMsh2	46147877	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	143	0	0	NA	exonic	Mad2l1bp	nonsynonymous SNV	Mad2l1bp:NM_025649:exon3:c.A726C:p.K242N	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9994699	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	46161213	12A2p6	cell line	sgMsh2	46161213	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.2	19	0	0	NA	exonic	Gtpbp2	nonsynonymous SNV	Gtpbp2:NM_019581:exon1:c.C73A:p.L25I	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.8593085	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	46172925	12A2p6	cell line	sgMsh2	46172925	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	114	0	0	NA	exonic	Polh	synonymous SNV	"Polh:NM_001364947:exon10:c.C1044A:p.T348T,Polh:NM_030715:exon11:c.C1413A:p.T471T"	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9982008	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr17	46194384	12A2p6	cell line	sgMsh2	46194384	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	264	0	0	NA	exonic	Polh	nonsynonymous SNV	Polh:NM_030715:exon4:c.T305C:p.I102T	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.958259531	1	0.9999414	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	46301022	12A2p6	cell line	sgMsh2	46301022	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	132	0	0	NA	exonic	Dlk2	nonsynonymous SNV	"Dlk2:NM_001286013:exon4:c.G212A:p.C71Y,Dlk2:NM_001286028:exon4:c.G212A:p.C71Y"	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.985380084	1	0.9985999	TGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	46566169	12A2p6	cell line	sgMsh2	46566169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	153	0	0	NA	exonic	Ptk7	nonsynonymous SNV	Ptk7:NM_175168:exon19:c.A2962G:p.M988V	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9994778	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	49452284	12A2p6	cell line	sgMsh2	49452284	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	0	0	NA	exonic	Mocs1	nonsynonymous SNV	"Mocs1:NM_020042:exon9:c.T1055C:p.L352P,Mocs1:NM_028464:exon9:c.T1055C:p.L352P"	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	1	0.9518871	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	50699379	12A2p6	cell line	sgMsh2	50699379	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.296	15	0	0	NA	exonic	Btg3	nonsynonymous SNV	Btg3:NM_001297747:exon1:c.T692C:p.V231A	17qC	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.8929987	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	56280758	12A2p6	cell line	sgMsh2	56280758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	59	0	0	NA	exonic	Plin3	nonsynonymous SNV	Plin3:NM_025836:exon7:c.A956G:p.D319G	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9819865	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	56564630	12A2p6	cell line	sgMsh2	56564630	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	131	0	0	NA	exonic	Safb2	nonsynonymous SNV	"Safb2:NM_001029979:exon18:c.A2522G:p.Y841C,Safb2:NM_001355463:exon18:c.A2525G:p.Y842C"	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991209	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	56632320	12A2p6	cell line	sgMsh2	56632320	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	208	0	0	NA	exonic	Catsperd	nonsynonymous SNV	Catsperd:NM_175350:exon3:c.T148G:p.F50V	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.800056306	2	0.6605654	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	56777470	12A2p6	cell line	sgMsh2	56777470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	98	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon16:c.A1928G:p.N643S,Rfx2:NM_027787:exon17:c.A2003G:p.N668S"	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9964726	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	57107431	12A2p6	cell line	sgMsh2	57107431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	139	0	0	NA	exonic	Tnfsf9	nonsynonymous SNV	Tnfsf9:NM_009404:exon3:c.A857G:p.D286G	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.8241396	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	57210260	12A2p6	cell line	sgMsh2	57210260	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	195	0	0	NA	exonic	C3	synonymous SNV	C3:NM_009778:exon30:c.T3874C:p.L1292L	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9979748	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr17	58313737	12A2p6	cell line	sgMsh2	58313737	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	351	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon18:c.G2810T:p.G937V	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.9986559	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	58330178	12A2p6	cell line	sgMsh2	58330178	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	368	0	0	NA	exonic	Cntnap5c	nonsynonymous SNV	Cntnap5c:NM_001081653:exon19:c.T3049G:p.S1017A	17qD	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9999965	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	64133519	12A2p6	cell line	sgMsh2	64133519	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	163	0	0	NA	exonic	Fer	nonsynonymous SNV	"Fer:NM_008000:exon12:c.A1020C:p.E340D,Fer:NM_001286415:exon16:c.A1956C:p.E652D,Fer:NM_001037997:exon17:c.A2130C:p.E710D"	17qE1.1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997719	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	65450377	12A2p6	cell line	sgMsh2	65450377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	157	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon7:c.T718C:p.W240R,Tmem232:NM_001008973:exon9:c.T820C:p.W274R,Tmem232:NM_001289486:exon9:c.T817C:p.W273R,Tmem232:NM_001289485:exon10:c.T820C:p.W274R"	17qE1.1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9992193	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	65582739	12A2p6	cell line	sgMsh2	65582739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	65	0	0	NA	exonic	Vapa	synonymous SNV	"Vapa:NM_013933:exon5:c.T432C:p.P144P,Vapa:NM_001355402:exon6:c.T546C:p.P182P"	17qE1.1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9859582	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr17	66693464	12A2p6	cell line	sgMsh2	66693464	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	125	0	0	NA	exonic	Ptprm	nonsynonymous SNV	"Ptprm:NM_008984:exon24:c.A3422G:p.E1141G,Ptprm:NM_001357625:exon26:c.A3524G:p.E1175G"	17qE1.1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.998868	CTC	nonsynonymous	TCTG	8	TCTGTCTG	NA
M8_p20	chr17	67738726	12A2p6	cell line	sgMsh2	67738726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	251	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon5:c.A625G:p.I209V	17qE1.1	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999944	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	68461550	12A2p6	cell line	sgMsh2	68461550	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	350	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.G652T:p.V218L	17qE1.2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9998299	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	71897972	12A2p6	cell line	sgMsh2	71897972	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	97	0	0	NA	exonic	Alk	nonsynonymous SNV	Alk:NM_007439:exon20:c.G3204T:p.Q1068H	17qE1.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.863337596	1	0.8919922	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	71902655	12A2p6	cell line	sgMsh2	71902655	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	21	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon16:c.2793delG:p.C932Afs*10	17qE1.3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8_p20	chr17	73895784	12A2p6	cell line	sgMsh2	73895784	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.235	138	0	0	NA	exonic	Xdh	nonsynonymous SNV	Xdh:NM_011723:exon31:c.T3370C:p.Y1124H	17qE2	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993455	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	78842141	12A2p6	cell line	sgMsh2	78842141	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	95	0	0	NA	exonic	Gpatch11	nonsynonymous SNV	Gpatch11:NM_181649:exon8:c.A569G:p.Y190C	17qE3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	78954662	12A2p6	cell line	sgMsh2	78954662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	221	0	0	NA	exonic	Prkd3	nonsynonymous SNV	"Prkd3:NM_001171005:exon16:c.A1940G:p.Y647C,Prkd3:NM_001171004:exon17:c.A2225G:p.Y742C,Prkd3:NM_029239:exon17:c.A2222G:p.Y741C"	17qE3	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999802	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	83441333	12A2p6	cell line	sgMsh2	83441333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	281	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon6:c.T526C:p.Y176H,Eml4:NM_001114362:exon7:c.T655C:p.Y219H,Eml4:NM_001357886:exon7:c.T559C:p.Y187H,Eml4:NM_001379373:exon8:c.T829C:p.Y277H,Eml4:NM_001379374:exon8:c.T688C:p.Y230H,Eml4:NM_001114361:exon9:c.T862C:p.Y288H,Eml4:NM_001286567:exon9:c.T721C:p.Y241H"	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8715587	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	83441359	12A2p6	cell line	sgMsh2	83441359	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	281	0	0	NA	exonic	Eml4	synonymous SNV	"Eml4:NM_199466:exon6:c.T552A:p.V184V,Eml4:NM_001114362:exon7:c.T681A:p.V227V,Eml4:NM_001357886:exon7:c.T585A:p.V195V,Eml4:NM_001379373:exon8:c.T855A:p.V285V,Eml4:NM_001379374:exon8:c.T714A:p.V238V,Eml4:NM_001114361:exon9:c.T888A:p.V296V,Eml4:NM_001286567:exon9:c.T747A:p.V249V"	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.09541638	TTT	synonymous	TTTAT	10	TTTATTTTAT	NA
M8_p20	chr17	83477824	12A2p6	cell line	sgMsh2	83477824	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	154	0	0	NA	exonic	Eml4	nonsynonymous SNV	"Eml4:NM_199466:exon21:c.T2288C:p.L763P,Eml4:NM_001114362:exon22:c.T2417C:p.L806P,Eml4:NM_001357886:exon22:c.T2321C:p.L774P,Eml4:NM_001379373:exon23:c.T2591C:p.L864P,Eml4:NM_001379374:exon23:c.T2450C:p.L817P,Eml4:NM_001114361:exon24:c.T2624C:p.L875P,Eml4:NM_001286567:exon24:c.T2483C:p.L828P"	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.999582	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	84697532	12A2p6	cell line	sgMsh2	84697532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	109	0	0	NA	exonic	Abcg8	nonsynonymous SNV	"Abcg8:NM_001286005:exon10:c.T1345C:p.F449L,Abcg8:NM_001347418:exon11:c.T1723C:p.F575L,Abcg8:NM_026180:exon11:c.T1726C:p.F576L"	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	0.623772713	2	0.9650751	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	85621880	12A2p6	cell line	sgMsh2	85621880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	30	0	0	NA	exonic	Six3	nonsynonymous SNV	Six3:NM_011381:exon1:c.T641C:p.F214S	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9411846	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	86797142	12A2p6	cell line	sgMsh2	86797142	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	78	0	0	NA	exonic	Epas1	nonsynonymous SNV	Epas1:NM_010137:exon2:c.A53C:p.K18T	17qE4	chr17-15052617-87650787	4	2	2	0.9	4.068082914	NA	1	1	1	0.9918373	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	87672625	12A2p6	cell line	sgMsh2	87672628	GTTG	-	Deletion	Mutect2;Strelka2	2	0.208	70	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon1:c.30_33del:p.L11Kfs*51	17qE4	chr17-87672302-87723786	13.87668699	9.87668699	4	0.9	4.068082914	NA	3	0.940179162	NA	NA	AGT	frameshift	NA	NA	NA	-4
M8_p20	chr17	88479276	12A2p6	cell line	sgMsh2	88479276	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	132	0	0	NA	exonic	Foxn2	nonsynonymous SNV	"Foxn2:NM_001355742:exon4:c.T633G:p.S211R,Foxn2:NM_001355743:exon4:c.T633G:p.S211R,Foxn2:NM_180974:exon4:c.T633G:p.S211R"	17qE4	chr17-87745782-94740433	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9829824	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr17	90208360	12A2p6	cell line	sgMsh2	90208360	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	112	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346958:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346959:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346960:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346961:exon3:c.G564T:p.Q188H,Nrxn1:NM_001346957:exon16:c.G3630T:p.Q1210H,Nrxn1:NM_177284:exon17:c.G3645T:p.Q1215H,Nrxn1:NM_020252:exon19:c.G3681T:p.Q1227H"	17qE5	chr17-87745782-94740433	4	2	2	0.9	4.068082914	NA	1	0.958259531	1	0.9933296	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	3426822	12A2p6	cell line	sgMsh2	3426822	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	225	0	0	NA	exonic	Cul2	nonsynonymous SNV	"Cul2:NM_001360829:exon15:c.C1451T:p.A484V,Cul2:NM_029402:exon15:c.C1451T:p.A484V"	18qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	4673014	12A2p6	cell line	sgMsh2	4673014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	72	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.T775C:p.Y259H	18qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	5054038	12A2p6	cell line	sgMsh2	5054038	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	209	0	0	NA	exonic	Svil	nonsynonymous SNV	Svil:NM_153153:exon4:c.A791G:p.E264G	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999672	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	6057540	12A2p6	cell line	sgMsh2	6057540	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	265	0	0	NA	exonic	Arhgap12	nonsynonymous SNV	Arhgap12:NM_001039692:exon8:c.A1339G:p.T447A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999969	GTA	nonsynonymous	AGG	8	AGGAGGAG	NA
M8_p20	chr18	10070697	12A2p6	cell line	sgMsh2	10070697	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	46	0	0	NA	exonic	Rock1	nonsynonymous SNV	Rock1:NM_009071:exon30:c.A3516T:p.K1172N	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.969227	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	10080406	12A2p6	cell line	sgMsh2	10080407	TC	-	Deletion	Strelka2;Vardict	2	0.2462	130	0	0	NA	exonic	Rock1	frameshift deletion	Rock1:NM_009071:exon26:c.3136_3137del:p.E1046Kfs*2	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TTC	frameshift	TC	9	TCTCTCTCT	-2
M8_p20	chr18	12490947	12A2p6	cell line	sgMsh2	12490947	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	139	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon33:c.T4156C:p.C1386R	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9993725	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	12497949	12A2p6	cell line	sgMsh2	12497949	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	247	0	0	NA	exonic	Lama3	nonsynonymous SNV	Lama3:NM_010680:exon36:c.T4640C:p.V1547A	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999934	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	13844351	12A2p6	cell line	sgMsh2	13844351	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	120	0	0	NA	exonic	Zfp521	nonsynonymous SNV	"Zfp521:NM_001360804:exon4:c.G3004A:p.E1002K,Zfp521:NM_145492:exon4:c.G3004A:p.E1002K"	18qA1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9986025	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	20449820	12A2p6	cell line	sgMsh2	20449820	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	142	0	0	NA	exonic	Dsg4	nonsynonymous SNV	Dsg4:NM_181564:exon5:c.G514A:p.A172T	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	2	1	1	0.9994471	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	22524412	12A2p6	cell line	sgMsh2	22524412	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	97	0	0	NA	exonic	Asxl3	nonsynonymous SNV	Asxl3:NM_001167777:exon13:c.G5478T:p.Q1826H	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9963212	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	22952177	12A2p6	cell line	sgMsh2	22952177	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	182	0	0	NA	exonic	Nol4	nonsynonymous SNV	"Nol4:NM_001161483:exon2:c.A179C:p.K60T,Nol4:NM_001347509:exon2:c.A398C:p.K133T,Nol4:NM_001347510:exon2:c.A398C:p.K133T,Nol4:NM_199024:exon2:c.A398C:p.K133T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998977	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	24017798	12A2p6	cell line	sgMsh2	24017798	A	-	Deletion	Mutect2;Vardict	2	0.238	41	0	0	NA	exonic	Zfp24	frameshift deletion	"Zfp24:NM_001357447:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_001357448:exon2:c.290delT:p.L97Wfs*30,Zfp24:NM_021559:exon2:c.290delT:p.L97Wfs*30"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr18	24271588	12A2p6	cell line	sgMsh2	24271588	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	121	0	0	NA	exonic	Galnt1	synonymous SNV	"Galnt1:NM_001160404:exon9:c.T981C:p.I327I,Galnt1:NM_001361200:exon9:c.T981C:p.I327I,Galnt1:NM_013814:exon9:c.T981C:p.I327I"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.827176859	1	0.7517771	TTT	synonymous	NA	NA	NA	NA
M8_p20	chr18	25340381	12A2p6	cell line	sgMsh2	25340381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	57	0	0	NA	exonic	AW554918	nonsynonymous SNV	AW554918:NM_001033532:exon7:c.A1241G:p.N414S	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	9.96E-07	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	25502943	12A2p6	cell line	sgMsh2	25502943	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.352	20	0	0	NA	exonic	Celf4	synonymous SNV	"Celf4:NM_001146292:exon7:c.C936T:p.T312T,Celf4:NM_001146293:exon7:c.C939T:p.T313T,Celf4:NM_001146294:exon7:c.C906T:p.T302T,Celf4:NM_001174074:exon7:c.C936T:p.T312T,Celf4:NM_001362275:exon7:c.C936T:p.T312T,Celf4:NM_001362276:exon7:c.C939T:p.T313T,Celf4:NM_001362277:exon7:c.C933T:p.T311T,Celf4:NM_001362278:exon7:c.C903T:p.T301T,Celf4:NM_001362279:exon7:c.C939T:p.T313T,Celf4:NM_001362280:exon7:c.C939T:p.T313T,Celf4:NM_001362281:exon7:c.C936T:p.T312T,Celf4:NM_001362282:exon7:c.C936T:p.T312T,Celf4:NM_001362283:exon7:c.C936T:p.T312T,Celf4:NM_001362284:exon7:c.C906T:p.T302T,Celf4:NM_001362285:exon7:c.C933T:p.T311T,Celf4:NM_001362286:exon7:c.C912T:p.T304T,Celf4:NM_001362288:exon7:c.C906T:p.T302T,Celf4:NM_001362289:exon7:c.C906T:p.T302T,Celf4:NM_001362290:exon7:c.C903T:p.T301T,Celf4:NM_001362291:exon7:c.C903T:p.T301T,Celf4:NM_001362292:exon7:c.C906T:p.T302T,Celf4:NM_001362293:exon7:c.C903T:p.T301T,Celf4:NM_001362294:exon7:c.C939T:p.T313T,Celf4:NM_001362295:exon7:c.C936T:p.T312T,Celf4:NM_001362297:exon7:c.C939T:p.T313T,Celf4:NM_001362299:exon7:c.C936T:p.T312T,Celf4:NM_001362300:exon7:c.C933T:p.T311T,Celf4:NM_001362301:exon7:c.C939T:p.T313T,Celf4:NM_001362302:exon7:c.C924T:p.T308T,Celf4:NM_001362303:exon7:c.C936T:p.T312T,Celf4:NM_001362304:exon7:c.C909T:p.T303T,Celf4:NM_001362308:exon7:c.C906T:p.T302T,Celf4:NM_001362309:exon7:c.C903T:p.T301T,Celf4:NM_001362310:exon7:c.C906T:p.T302T,Celf4:NM_001362311:exon7:c.C939T:p.T313T,Celf4:NM_001362313:exon7:c.C936T:p.T312T,Celf4:NM_001362315:exon7:c.C939T:p.T313T,Celf4:NM_001362316:exon7:c.C936T:p.T312T,Celf4:NM_001362322:exon7:c.C936T:p.T312T,Celf4:NM_001362323:exon7:c.C933T:p.T311T,Celf4:NM_001362324:exon7:c.C933T:p.T311T,Celf4:NM_001362325:exon7:c.C909T:p.T303T,Celf4:NM_001362326:exon7:c.C906T:p.T302T,Celf4:NM_001362327:exon7:c.C909T:p.T303T,Celf4:NM_001362328:exon7:c.C906T:p.T302T,Celf4:NM_001362329:exon7:c.C906T:p.T302T,Celf4:NM_001362330:exon7:c.C903T:p.T301T,Celf4:NM_001362331:exon7:c.C939T:p.T313T,Celf4:NM_001362332:exon7:c.C936T:p.T312T,Celf4:NM_001362334:exon7:c.C912T:p.T304T,Celf4:NM_001362335:exon7:c.C909T:p.T303T,Celf4:NM_001362336:exon7:c.C906T:p.T302T,Celf4:NM_001362337:exon7:c.C567T:p.T189T,Celf4:NM_133195:exon7:c.C936T:p.T312T"	18qA2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9123907	GGG	synonymous	NA	NA	NA	NA
M8_p20	chr18	31961830	12A2p6	cell line	sgMsh2	31961830	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	173	0	0	NA	exonic	Myo7b	nonsynonymous SNV	Myo7b:NM_032394:exon42:c.A5711T:p.D1904V	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998504	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	32123645	12A2p6	cell line	sgMsh2	32123645	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	76	0	0	NA	exonic	Proc	nonsynonymous SNV	"Proc:NM_001042767:exon9:c.A968G:p.N323S,Proc:NM_001313938:exon9:c.A968G:p.N323S,Proc:NM_008934:exon9:c.A1031G:p.N344S,Proc:NM_001042768:exon10:c.A995G:p.N332S"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.727734832	2	0.6737768	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	34314304	12A2p6	cell line	sgMsh2	34314304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	59	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A4075C:p.S1359R,Apc:NM_007462:exon16:c.A4252C:p.S1418R,Apc:NM_001360980:exon17:c.A4306C:p.S1436R"	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.655413358	2	0.7736575	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	34644085	12A2p6	cell line	sgMsh2	34644085	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	152	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon5:c.T461C:p.L154P	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.70061428	2	0.9827913	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	34645077	12A2p6	cell line	sgMsh2	34645077	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	82	0	0	NA	exonic	Cdc23	nonsynonymous SNV	Cdc23:NM_178347:exon4:c.T404C:p.V135A	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.759375477	2	0.000580387	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	34808729	12A2p6	cell line	sgMsh2	34808729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	57	0	0	NA	exonic	Kdm3b	synonymous SNV	Kdm3b:NM_001081256:exon8:c.A1872G:p.L624L	18qB1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	9.96E-07	TAC	synonymous	T	5	TTTTT	NA
M8_p20	chr18	35587673	12A2p6	cell line	sgMsh2	35587673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	88	0	0	NA	exonic	Matr3	synonymous SNV	Matr3:NM_010771:exon13:c.T2188C:p.L730L	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9946315	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr18	35623472	12A2p6	cell line	sgMsh2	35623472	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	121	0	0	NA	exonic	Slc23a1	frameshift deletion	Slc23a1:NM_011397:exon9:c.1073delC:p.P358Lfs*38	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.836217043	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M8_p20	chr18	35739535	12A2p6	cell line	sgMsh2	35739535	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	124	0	0	NA	exonic	Sting1	nonsynonymous SNV	"Sting1:NM_001289591:exon2:c.G190T:p.G64C,Sting1:NM_001289592:exon3:c.G43T:p.G15C,Sting1:NM_028261:exon3:c.G43T:p.G15C"	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.926618886	1	0.9871909	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	36685431	12A2p6	cell line	sgMsh2	36685431	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	55	0	0	NA	exonic	E230025N22Rik	synonymous SNV	E230025N22Rik:NM_172831:exon13:c.G1344A:p.Q448Q	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9787452	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr18	36737822	12A2p6	cell line	sgMsh2	36737822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	92	0	0	NA	exonic	Tmco6	synonymous SNV	Tmco6:NM_028036:exon4:c.C468A:p.T156T	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.985380084	1	0.993545	CCT	synonymous	ACCT	19	CCTACCTCCTCACCTACCT	NA
M8_p20	chr18	36744198	12A2p6	cell line	sgMsh2	36744198	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	20	0	0	NA	exonic	Ndufa2	nonsynonymous SNV	Ndufa2:NM_010885:exon2:c.A191G:p.K64R	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9123907	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37006531	12A2p6	cell line	sgMsh2	37006531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	235	0	0	NA	exonic	Pcdha10	synonymous SNV	Pcdha10:NM_009961:exon1:c.T1212C:p.N404N	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999891	ATT	synonymous	ATT	9	ATTATTATT	NA
M8_p20	chr18	37021442	12A2p6	cell line	sgMsh2	37021442	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	186	0	0	NA	exonic	Pcdha12	nonsynonymous SNV	Pcdha12:NM_138663:exon1:c.T1213C:p.Y405H	18qB2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.953739439	1	0.9991676	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37295009	12A2p6	cell line	sgMsh2	37295009	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	92	0	0	NA	exonic	Pcdhb2	frameshift deletion	Pcdhb2:NM_053127:exon1:c.34delA:p.R14Gfs*11	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8_p20	chr18	37301004	12A2p6	cell line	sgMsh2	37301004	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.196	81	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T22C:p.F8L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.885938057	1	0.9237188	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37302556	12A2p6	cell line	sgMsh2	37302556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	183	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.A1574G:p.Q525R	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.664453543	2	0.9984139	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37343315	12A2p6	cell line	sgMsh2	37343315	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	511	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.A1503G:p.I501M	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.881417965	1	0.999185	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37343913	12A2p6	cell line	sgMsh2	37343913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	0	0	NA	exonic	Pcdhb7	nonsynonymous SNV	Pcdhb7:NM_053132:exon1:c.T2101C:p.Y701H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996217	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37473936	12A2p6	cell line	sgMsh2	37473936	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	74	0	0	NA	exonic	Pcdhb15	nonsynonymous SNV	Pcdhb15:NM_053140:exon1:c.T220C:p.F74L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.65993345	2	0.8647948	ATT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr18	37478234	12A2p6	cell line	sgMsh2	37478234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	94	0	0	NA	exonic	Pcdhb16	synonymous SNV	Pcdhb16:NM_053141:exon1:c.A246G:p.T82T	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.605692345	2	0.9296646	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr18	37680939	12A2p6	cell line	sgMsh2	37680939	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	214	0	0	NA	exonic	Pcdhgb1	nonsynonymous SNV	Pcdhgb1:NM_033574:exon1:c.G482T:p.S161I	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	2	1	1	0.9999735	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	37941753	12A2p6	cell line	sgMsh2	37941753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	313	0	0	NA	exonic	Hdac3	nonsynonymous SNV	Hdac3:NM_010411:exon12:c.T934C:p.S312P	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.899498333	1	0.9983916	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	38260027	12A2p6	cell line	sgMsh2	38260027	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	25	0	0	NA	exonic	Dele1	nonsynonymous SNV	Dele1:NM_024179:exon11:c.T1283A:p.L428H	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9281943	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	38283682	12A2p6	cell line	sgMsh2	38283682	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	154	0	0	NA	exonic	Pcdh12	nonsynonymous SNV	Pcdh12:NM_017378:exon1:c.A389C:p.D130A	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.831696951	1	0.7652858	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	40258577	12A2p6	cell line	sgMsh2	40258577	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	142	0	0	NA	exonic	Kctd16	nonsynonymous SNV	"Kctd16:NM_001371039:exon2:c.T217G:p.F73V,Kctd16:NM_001371040:exon2:c.T217G:p.F73V,Kctd16:NM_001371041:exon2:c.T217G:p.F73V,Kctd16:NM_026135:exon2:c.T217G:p.F73V"	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.854297412	1	0.886188	GTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr18	42178844	12A2p6	cell line	sgMsh2	42178844	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	118	0	0	NA	exonic	Plac8l1	nonsynonymous SNV	Plac8l1:NM_027072:exon4:c.C509T:p.P170L	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984797	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	43540648	12A2p6	cell line	sgMsh2	43540648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	200	0	0	NA	exonic	Jakmip2	nonsynonymous SNV	Jakmip2:NM_001163637:exon20:c.A2350G:p.I784V	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999521	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	44847844	12A2p6	cell line	sgMsh2	44847844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	145	0	0	NA	exonic	Ythdc2	nonsynonymous SNV	Ythdc2:NM_001163013:exon10:c.A1505G:p.Q502R	18qB3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.750335293	2	0.8704419	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	46169299	12A2p6	cell line	sgMsh2	46169299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	147	0	0	NA	exonic	Trim36	synonymous SNV	"Trim36:NM_001170855:exon9:c.T1645C:p.L549L,Trim36:NM_178872:exon9:c.T1681C:p.L561L"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995522	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr18	46607802	12A2p6	cell line	sgMsh2	46607802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	386	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T433C:p.Y145H,Eif1a:NM_010120:exon3:c.T103C:p.Y35H"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	1.97E-08	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	46607919	12A2p6	cell line	sgMsh2	46607919	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	382	0	0	NA	exonic	Eif1a	nonsynonymous SNV	"Eif1a:NM_001374654:exon3:c.T550C:p.S184P,Eif1a:NM_010120:exon3:c.T220C:p.S74P"	18qC	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.804576399	2	0.8840209	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	49934633	12A2p6	cell line	sgMsh2	49934633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	173	0	0	NA	exonic	Dmxl1	nonsynonymous SNV	Dmxl1:NM_001081371:exon35:c.T7958C:p.L2653P	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.709654464	2	0.9880187	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	53383147	12A2p6	cell line	sgMsh2	53383147	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	46	0	0	NA	exonic	Snx24	synonymous SNV	"Snx24:NM_001370761:exon4:c.G327A:p.P109P,Snx24:NM_029394:exon4:c.G327A:p.P109P"	18qD1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.969227	CGA	synonymous	NA	NA	NA	NA
M8_p20	chr18	56491908	12A2p6	cell line	sgMsh2	56491908	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	125	0	0	NA	exonic	Gramd3	nonsynonymous SNV	"Gramd3:NM_001360917:exon12:c.A1111C:p.I371L,Gramd3:NM_026240:exon12:c.A1072C:p.I358L"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.998868	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	56728491	12A2p6	cell line	sgMsh2	56728491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	81	0	0	NA	exonic	Lmnb1	synonymous SNV	Lmnb1:NM_010721:exon2:c.T453C:p.A151A	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.976339899	1	0.9881317	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr18	56743311	12A2p6	cell line	sgMsh2	56743311	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	140	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon8:c.T1490A:p.V497D	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9993984	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	58954556	12A2p6	cell line	sgMsh2	58954556	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	77	0	0	NA	exonic	Adamts19	nonsynonymous SNV	Adamts19:NM_175506:exon10:c.A1657G:p.S553G	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.989900176	1	0.9895747	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	60602739	12A2p6	cell line	sgMsh2	60602739	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.322	78	0	0	NA	exonic	Synpo	frameshift deletion	"Synpo:NM_001109975:exon2:c.1417delG:p.A473Lfs*15,Synpo:NM_177340:exon2:c.1417delG:p.A473Lfs*15"	18qD3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr18	61697778	12A2p6	cell line	sgMsh2	61697778	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	104	0	0	NA	exonic	Pcyox1l	nonsynonymous SNV	Pcyox1l:NM_172832:exon6:c.A1022G:p.Y341C	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9972592	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	65157969	12A2p6	cell line	sgMsh2	65157969	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	170	0	0	NA	exonic	Nedd4l	nonsynonymous SNV	"Nedd4l:NM_031881:exon8:c.A275G:p.N92S,Nedd4l:NM_001114386:exon9:c.A638G:p.N213S"	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.91305861	1	0.9917518	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	67428990	12A2p6	cell line	sgMsh2	67428990	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	126	0	0	NA	exonic	Afg3l2	nonsynonymous SNV	Afg3l2:NM_027130:exon8:c.A1014T:p.K338N	18qE1	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9989147	TTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr18	71367155	12A2p6	cell line	sgMsh2	71367155	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	140	0	0	NA	exonic	Dcc	nonsynonymous SNV	Dcc:NM_007831:exon20:c.A3020G:p.H1007R	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.682533911	2	0.000989523	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	74787239	12A2p6	cell line	sgMsh2	74787239	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	94	0	0	NA	exonic	Acaa2	nonsynonymous SNV	Acaa2:NM_177470:exon2:c.T137G:p.V46G	18qE2	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.890458149	1	0.9406914	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	75519813	12A2p6	cell line	sgMsh2	75519813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	58	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon9:c.A1372G:p.K458E	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9812248	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	75521562	12A2p6	cell line	sgMsh2	75521562	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	50	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.T892C:p.C298R	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9738829	CAG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr18	75521651	12A2p6	cell line	sgMsh2	75521651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	74	0	0	NA	exonic	Ctif	nonsynonymous SNV	Ctif:NM_201354:exon8:c.A803G:p.H268R	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.70061428	2	0.7644942	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	77356771	12A2p6	cell line	sgMsh2	77356771	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	148	0	0	NA	exonic	Loxhd1	nonsynonymous SNV	Loxhd1:NM_172834:exon14:c.A1822G:p.T608A	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.858817504	1	0.09522488	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	78185849	12A2p6	cell line	sgMsh2	78185849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	69	0	0	NA	exonic	Slc14a2	nonsynonymous SNV	"Slc14a2:NM_001110274:exon5:c.A494C:p.Y165S,Slc14a2:NM_030683:exon9:c.A908C:p.Y303S,Slc14a2:NM_207651:exon9:c.A908C:p.Y303S"	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9881126	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	78859571	12A2p6	cell line	sgMsh2	78859571	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	78	0	0	NA	exonic	Setbp1	nonsynonymous SNV	Setbp1:NM_053099:exon4:c.A880T:p.T294S	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9918373	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	80192700	12A2p6	cell line	sgMsh2	80192700	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	77	0	0	NA	exonic	Rbfa	nonsynonymous SNV	Rbfa:NM_199197:exon6:c.G833A:p.R278H	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9914886	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	80973992	12A2p6	cell line	sgMsh2	80973992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	23	0	0	NA	exonic	Sall3	synonymous SNV	"Sall3:NM_001369133:exon2:c.G720T:p.R240R,Sall3:NM_178280:exon2:c.G720T:p.R240R"	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9222463	GCC	synonymous	NA	NA	NA	NA
M8_p20	chr18	82405993	12A2p6	cell line	sgMsh2	82405993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	164	0	0	NA	exonic	Galr1	nonsynonymous SNV	Galr1:NM_008082:exon1:c.T158C:p.L53P	18qE3	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997813	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	86404705	12A2p6	cell line	sgMsh2	86404705	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	128	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon4:c.T286C:p.C96R	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.9990024	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	86461304	12A2p6	cell line	sgMsh2	86461304	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	115	0	0	NA	exonic	Neto1	nonsynonymous SNV	Neto1:NM_144946:exon6:c.A616G:p.I206V	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	1	1	0.998275	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr18	86716721	12A2p6	cell line	sgMsh2	86716721	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	88	0	0	NA	exonic	Cbln2	synonymous SNV	"Cbln2:NM_001361143:exon4:c.C618T:p.N206N,Cbln2:NM_001361144:exon4:c.C618T:p.N206N,Cbln2:NM_001361145:exon4:c.C618T:p.N206N,Cbln2:NM_172633:exon4:c.C618T:p.N206N,Cbln2:NM_001302356:exon5:c.C618T:p.N206N,Cbln2:NM_001361142:exon5:c.C618T:p.N206N"	18qE4	chr18-5046666-88869177	3	2	1	0.9	4.068082914	NA	1	0.623772713	2	0.9352613	ACC	synonymous	NA	NA	NA	NA
M8_p20	chr18	89207028	12A2p6	cell line	sgMsh2	89207028	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	303	0	0	NA	exonic	Cd226	synonymous SNV	Cd226:NM_178687:exon3:c.A48G:p.A16A	18qE4	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr19	3378441	12A2p6	cell line	sgMsh2	3378441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	269	0	0	NA	exonic	Cpt1a	nonsynonymous SNV	Cpt1a:NM_013495:exon15:c.T1814C:p.V605A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	3628419	12A2p6	cell line	sgMsh2	3628419	C	-	Deletion	Mutect2;Vardict	2	0.118	259	0	0	NA	exonic	Lrp5	frameshift deletion	Lrp5:NM_008513:exon7:c.1435delG:p.E479Rfs*9	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8_p20	chr19	3948632	12A2p6	cell line	sgMsh2	3948632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	94	0	0	NA	exonic	Unc93b1	nonsynonymous SNV	Unc93b1:NM_019449:exon11:c.A1550G:p.K517R	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	4731990	12A2p6	cell line	sgMsh2	4731990	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.679	76	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon11:c.G1256A:p.R419H	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	4734063	12A2p6	cell line	sgMsh2	4734063	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	130	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.T1832C:p.L611P	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	4734128	12A2p6	cell line	sgMsh2	4734128	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	142	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon14:c.A1897G:p.R633G	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	4738431	12A2p6	cell line	sgMsh2	4738431	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	31	0	0	NA	exonic	Sptbn2	nonsynonymous SNV	Sptbn2:NM_021287:exon16:c.G3437T:p.R1146M	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGG	nonsynonymous	CAGA	8	CAGACAGA	NA
M8_p20	chr19	4841626	12A2p6	cell line	sgMsh2	4841626	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	243	0	0	NA	exonic	Ccdc87	synonymous SNV	Ccdc87:NM_207268:exon1:c.T2145A:p.A715A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr19	4897632	12A2p6	cell line	sgMsh2	4897632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	115	0	0	NA	exonic	Bbs1	nonsynonymous SNV	Bbs1:NM_001033128:exon10:c.T893C:p.V298A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5114002	12A2p6	cell line	sgMsh2	5114002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	126	0	0	NA	exonic	Klc2	nonsynonymous SNV	"Klc2:NM_001369360:exon3:c.A398T:p.E133V,Klc2:NM_001369361:exon3:c.A398T:p.E133V,Klc2:NM_001369362:exon3:c.A398T:p.E133V,Klc2:NM_008451:exon3:c.A398T:p.E133V"	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5156410	12A2p6	cell line	sgMsh2	5156410	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	144	0	0	NA	exonic	Pacs1	nonsynonymous SNV	"Pacs1:NM_153129:exon5:c.A746G:p.Y249C,Pacs1:NM_001362451:exon6:c.A527G:p.Y176C"	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5450259	12A2p6	cell line	sgMsh2	5450259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	102	0	0	NA	exonic	Fosl1	nonsynonymous SNV	Fosl1:NM_010235:exon2:c.G205A:p.A69T	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5462623	12A2p6	cell line	sgMsh2	5462623	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	200	0	0	NA	exonic	Fibp	nonsynonymous SNV	"Fibp:NM_001253832:exon4:c.G503A:p.R168Q,Fibp:NM_021438:exon4:c.G503A:p.R168Q"	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5503371	12A2p6	cell line	sgMsh2	5503371	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	260	0	0	NA	exonic	1700020D05Rik	synonymous SNV	1700020D05Rik:NM_023781:exon1:c.G381A:p.V127V	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ACA	synonymous	NA	NA	NA	NA
M8_p20	chr19	5666576	12A2p6	cell line	sgMsh2	5666576	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	203	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon31:c.A5117T:p.D1706V	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5685302	12A2p6	cell line	sgMsh2	5685302	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	23	0	0	NA	exonic	Pcnx3	nonsynonymous SNV	Pcnx3:NM_144868:exon6:c.A1495G:p.T499A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5702210	12A2p6	cell line	sgMsh2	5702210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	54	0	0	NA	exonic	Map3k11	nonsynonymous SNV	Map3k11:NM_022012:exon12:c.A2419G:p.T807A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5704788	12A2p6	cell line	sgMsh2	5704788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	62	0	0	NA	exonic	Kcnk7	nonsynonymous SNV	Kcnk7:NM_010609:exon1:c.A313G:p.T105A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAC	nonsynonymous	CAC	10	CACCACCACC	NA
M8_p20	chr19	5721751	12A2p6	cell line	sgMsh2	5721751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	61	0	0	NA	exonic	Ehbp1l1	nonsynonymous SNV	"Ehbp1l1:NM_001114595:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114596:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001114597:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_001381901:exon5:c.G407A:p.R136Q,Ehbp1l1:NM_053252:exon5:c.G407A:p.R136Q"	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5906580	12A2p6	cell line	sgMsh2	5906580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	80	0	0	NA	exonic	Dpf2	nonsynonymous SNV	"Dpf2:NM_001291078:exon3:c.A245G:p.K82R,Dpf2:NM_011262:exon3:c.A245G:p.K82R"	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr19	5918378	12A2p6	cell line	sgMsh2	5918378	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	83	0	0	NA	exonic	Cdc42ep2	nonsynonymous SNV	Cdc42ep2:NM_026772:exon2:c.C298A:p.L100M	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	5982837	12A2p6	cell line	sgMsh2	5982837	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.121	64	0	0	NA	exonic	Slc22a20	nonsynonymous SNV	Slc22a20:NM_198650:exon4:c.T799G:p.S267A	19qA	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	6989812	12A2p6	cell line	sgMsh2	6989812	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	189	0	0	NA	exonic	Dnajc4	synonymous SNV	"Dnajc4:NM_001356999:exon3:c.G291A:p.E97E,Dnajc4:NM_001357000:exon4:c.G291A:p.E97E,Dnajc4:NM_001357001:exon4:c.G243A:p.E81E,Dnajc4:NM_020566:exon4:c.G243A:p.E81E"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.894978241	1	0.9860241	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr19	8794137	12A2p6	cell line	sgMsh2	8794137	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	490	0	0	NA	exonic	Polr2g	nonsynonymous SNV	Polr2g:NM_026329:exon6:c.T470C:p.I157T	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	1.23E-09	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	8804050	12A2p6	cell line	sgMsh2	8804050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.343	57	0	0	NA	exonic	Zbtb3	frameshift deletion	"Zbtb3:NM_001098237:exon2:c.1026delT:p.F343Lfs*8,Zbtb3:NM_133759:exon2:c.1026delT:p.F343Lfs*8"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr19	8890518	12A2p6	cell line	sgMsh2	8890518	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	98	0	0	NA	exonic	1810009A15Rik	stoploss	1810009A15Rik:NM_025463:exon4:c.T370A:p.X124K	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9964726	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	9878396	12A2p6	cell line	sgMsh2	9878396	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.294	23	0	0	NA	exonic	Incenp	synonymous SNV	"Incenp:NM_016692:exon11:c.A1551C:p.R517R,Incenp:NM_001369356:exon12:c.A1563C:p.R521R"	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9222463	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr19	11068434	12A2p6	cell line	sgMsh2	11068434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	193	0	0	NA	exonic	Ms4a8a	nonsynonymous SNV	Ms4a8a:NM_022430:exon6:c.A709G:p.S237G	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999357	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	11068459	12A2p6	cell line	sgMsh2	11068459	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	160	0	0	NA	exonic	Ms4a8a	synonymous SNV	Ms4a8a:NM_022430:exon6:c.A684G:p.L228L	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9997412	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr19	12901283	12A2p6	cell line	sgMsh2	12901283	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	599	0	0	NA	exonic	Olfr1447	nonsynonymous SNV	Olfr1447:NM_146703:exon1:c.A496G:p.T166A	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.533370871	3	0.9975377	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	12953920	12A2p6	cell line	sgMsh2	12953920	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	630	0	0	NA	exonic	Olfr1450	synonymous SNV	Olfr1450:NM_146371:exon1:c.T330C:p.V110V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.678013819	2	1.03E-09	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr19	13146544	12A2p6	cell line	sgMsh2	13146544	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.162	375	0	0	NA	exonic	Olfr1459	frameshift deletion	Olfr1459:NM_146689:exon1:c.114delA:p.G39Efs*4	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.732254925	NA	NA	CTA	frameshift	NA	NA	NA	-1
M8_p20	chr19	13502426	12A2p6	cell line	sgMsh2	13502426	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	792	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.A82G:p.I28V	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.87237778	1	0.9997532	TAT	nonsynonymous	TTTA	9	TTTATTTAT	NA
M8_p20	chr19	13633635	12A2p6	cell line	sgMsh2	13633635	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.408	269	0	0	NA	exonic	Olfr1489	frameshift deletion	Olfr1489:NM_146635:exon1:c.523delT:p.C177Vfs*15	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr19	13815007	12A2p6	cell line	sgMsh2	13815007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	353	0	0	NA	exonic	Olfr1499	synonymous SNV	Olfr1499:NM_146796:exon1:c.T582C:p.N194N	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.745815201	2	0.9992713	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr19	16383254	12A2p6	cell line	sgMsh2	16383254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	238	0	0	NA	exonic	Gnaq	nonsynonymous SNV	Gnaq:NM_008139:exon7:c.G940A:p.V314M	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.664453543	2	0.9998109	CGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	16640010	12A2p6	cell line	sgMsh2	16640010	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.345	410	0	0	NA	exonic	Vps13a	synonymous SNV	Vps13a:NM_173028:exon67:c.T9033C:p.S3011S	19qA	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	7.81E-09	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr19	17436521	12A2p6	cell line	sgMsh2	17436521	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	130	0	0	NA	exonic	Pcsk5	nonsynonymous SNV	Pcsk5:NM_001190483:exon37:c.G5183A:p.C1728Y	19qB	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.732254925	2	0.8974504	GCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	20620089	12A2p6	cell line	sgMsh2	20620089	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	306	0	0	NA	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon4:c.A433G:p.I145V,Aldh1a1:NM_001361504:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361506:exon7:c.A433G:p.I145V,Aldh1a1:NM_001361503:exon8:c.A433G:p.I145V,Aldh1a1:NM_001361505:exon8:c.A433G:p.I145V"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.551451239	3	0.5925269	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	21829801	12A2p6	cell line	sgMsh2	21829801	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	143	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon16:c.A2593G:p.T865A,Cemip2:NM_031997:exon17:c.A2593G:p.T865A"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.70061428	2	0.9762083	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	22711917	12A2p6	cell line	sgMsh2	22711917	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	57	0	0	NA	exonic	Trpm3	nonsynonymous SNV	"Trpm3:NM_001035239:exon4:c.T674G:p.V225G,Trpm3:NM_001035240:exon4:c.T674G:p.V225G,Trpm3:NM_001035241:exon4:c.T674G:p.V225G,Trpm3:NM_001035242:exon4:c.T674G:p.V225G,Trpm3:NM_001035243:exon4:c.T674G:p.V225G,Trpm3:NM_001035244:exon4:c.T209G:p.V70G,Trpm3:NM_001035245:exon4:c.T209G:p.V70G,Trpm3:NM_001035246:exon4:c.T209G:p.V70G,Trpm3:NM_001362487:exon4:c.T668G:p.V223G,Trpm3:NM_001362488:exon4:c.T668G:p.V223G,Trpm3:NM_001362489:exon4:c.T668G:p.V223G,Trpm3:NM_001362490:exon4:c.T668G:p.V223G,Trpm3:NM_001362491:exon4:c.T668G:p.V223G,Trpm3:NM_001362496:exon4:c.T209G:p.V70G,Trpm3:NM_001362498:exon4:c.T668G:p.V223G,Trpm3:NM_001362499:exon4:c.T668G:p.V223G,Trpm3:NM_001362500:exon4:c.T668G:p.V223G,Trpm3:NM_001362501:exon4:c.T668G:p.V223G,Trpm3:NM_001362502:exon4:c.T668G:p.V223G,Trpm3:NM_001362503:exon4:c.T668G:p.V223G,Trpm3:NM_001362504:exon4:c.T668G:p.V223G,Trpm3:NM_001362506:exon4:c.T668G:p.V223G,Trpm3:NM_001362507:exon4:c.T668G:p.V223G,Trpm3:NM_001362511:exon4:c.T209G:p.V70G,Trpm3:NM_001362512:exon4:c.T209G:p.V70G,Trpm3:NM_001362513:exon4:c.T209G:p.V70G,Trpm3:NM_177341:exon4:c.T668G:p.V223G"	19qB	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	9.96E-07	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	23893569	12A2p6	cell line	sgMsh2	23893569	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	32	0	0	NA	exonic	Apba1	nonsynonymous SNV	Apba1:NM_177034:exon2:c.A764T:p.K255M	19qB	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.781975938	1	0.7318311	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	27424238	12A2p6	cell line	sgMsh2	27424238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	303	0	0	NA	exonic	Pum3	synonymous SNV	Pum3:NM_177474:exon4:c.A411C:p.R137R	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.754855385	2	0.9948591	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr19	29385411	12A2p6	cell line	sgMsh2	29385411	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	313	0	0	NA	exonic	Cd274	stoploss	Cd274:NM_021893:exon7:c.A872C:p.X291S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999996	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	29437440	12A2p6	cell line	sgMsh2	29437440	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	85	0	0	NA	exonic	Pdcd1lg2	nonsynonymous SNV	Pdcd1lg2:NM_021396:exon3:c.T266C:p.I89T	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.949219347	1	0.9812719	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	29646076	12A2p6	cell line	sgMsh2	29646076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	151	0	0	NA	exonic	Ermp1	synonymous SNV	"Ermp1:NM_001081213:exon2:c.G513A:p.T171T,Ermp1:NM_001362131:exon2:c.G513A:p.T171T"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.944699254	1	0.9966009	TCG	synonymous	NA	NA	NA	NA
M8_p20	chr19	31083190	12A2p6	cell line	sgMsh2	31083190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	204	0	0	NA	exonic	Cstf2t	nonsynonymous SNV	Cstf2t:NM_031249:exon1:c.T125C:p.V42A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.696094187	2	0.9979534	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	31764716	12A2p6	cell line	sgMsh2	31764716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	107	0	0	NA	exonic	Prkg1	nonsynonymous SNV	Prkg1:NM_001013833:exon1:c.T107C:p.L36P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.592132069	2	0.9165738	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	31918108	12A2p6	cell line	sgMsh2	31918108	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	87	0	0	NA	exonic	A1cf	nonsynonymous SNV	"A1cf:NM_001081074:exon5:c.G590A:p.R197Q,A1cf:NM_001365078:exon5:c.G590A:p.R197Q"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.917578702	1	0.9641425	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	32006315	12A2p6	cell line	sgMsh2	32006315	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	477	0	0	NA	exonic	Asah2	synonymous SNV	Asah2:NM_018830:exon20:c.A1728G:p.P576P	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	1.40E-09	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr19	33580554	12A2p6	cell line	sgMsh2	33580554	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	550	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon6:c.A437G:p.Y146C	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.682533911	2	1.58E-09	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	33784739	12A2p6	cell line	sgMsh2	33784739	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	390	0	0	NA	exonic	Lipo1	synonymous SNV	Lipo1:NM_001323065:exon3:c.T357C:p.S119S	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	1.68E-08	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr19	34574272	12A2p6	cell line	sgMsh2	34574272	A	-	Deletion	Mutect2;Vardict	2	0.17	167	0	0	NA	exonic	Ifit2	frameshift deletion	"Ifit2:NM_001355262:exon3:c.1211delA:p.K406Rfs*1,Ifit2:NM_008332:exon3:c.1211delA:p.K406Rfs*1"	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.768415662	NA	NA	CAA	frameshift	C	5	CCCCC	-1
M8_p20	chr19	34675217	12A2p6	cell line	sgMsh2	34675217	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	104	0	0	NA	exonic	Slc16a12	synonymous SNV	Slc16a12:NM_172838:exon5:c.A528T:p.A176A	19qC1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.809096491	1	0.6613716	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr19	36117933	12A2p6	cell line	sgMsh2	36117933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	134	0	0	NA	exonic	Ankrd1	synonymous SNV	Ankrd1:NM_013468:exon4:c.T354C:p.P118P	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9992253	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr19	37002457	12A2p6	cell line	sgMsh2	37002457	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	129	0	0	NA	exonic	Btaf1	nonsynonymous SNV	Btaf1:NM_001080706:exon33:c.A4625C:p.D1542A	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9990436	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	37004443	12A2p6	cell line	sgMsh2	37004443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	313	0	0	NA	exonic	Btaf1	synonymous SNV	Btaf1:NM_001080706:exon35:c.C4872T:p.D1624D	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.70061428	2	0.9999525	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr19	37639757	12A2p6	cell line	sgMsh2	37639757	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.133	338	0	0	NA	exonic	Exoc6	nonsynonymous SNV	Exoc6:NM_175353:exon19:c.T2089C:p.C697R	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.601172253	2	0.9935123	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	38178147	12A2p6	cell line	sgMsh2	38178147	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	383	0	0	NA	exonic	Pde6c	nonsynonymous SNV	"Pde6c:NM_001170959:exon17:c.A2136T:p.E712D,Pde6c:NM_033614:exon17:c.A2136T:p.E712D"	19qC2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	2.23E-08	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	38719568	12A2p6	cell line	sgMsh2	38719568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	246	0	0	NA	exonic	Plce1	nonsynonymous SNV	Plce1:NM_019588:exon8:c.T3100C:p.Y1034H	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.8658029	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	39615653	12A2p6	cell line	sgMsh2	39615653	T	C	SNV	Mutect2;MuSe;Vardict	3	0.15	206	0	0	NA	exonic	Cyp2c67	nonsynonymous SNV	Cyp2c67:NM_001024719:exon8:c.A1258G:p.K420E	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.678013819	2	0.9991814	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	40913472	12A2p6	cell line	sgMsh2	40913472	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	589	0	0	NA	exonic	Zfp518a	nonsynonymous SNV	Zfp518a:NM_028319:exon5:c.A1844C:p.N615T	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.822656767	2	0.7587615	AAT	nonsynonymous	ATTA	8	ATTAATTA	NA
M8_p20	chr19	40914922	12A2p6	cell line	sgMsh2	40914922	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	346	0	0	NA	exonic	Zfp518a	synonymous SNV	Zfp518a:NM_028319:exon5:c.A3294G:p.Q1098Q	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.768415662	2	0.9932507	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr19	41223143	12A2p6	cell line	sgMsh2	41223143	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	303	0	0	NA	exonic	Tm9sf3	synonymous SNV	Tm9sf3:NM_133352:exon10:c.T1260C:p.G420G	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999994	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr19	42770757	12A2p6	cell line	sgMsh2	42770757	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.106	67	0	0	NA	exonic	Hps1	nonsynonymous SNV	"Hps1:NM_001362410:exon4:c.A395G:p.K132R,Hps1:NM_001346703:exon5:c.A395G:p.K132R,Hps1:NM_019424:exon5:c.A395G:p.K132R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.479129765	3	0.5873283	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	43852322	12A2p6	cell line	sgMsh2	43852322	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	45	0	0	NA	exonic	Dnmbp	nonsynonymous SNV	"Dnmbp:NM_001306088:exon12:c.A1637G:p.Q546R,Dnmbp:NM_028029:exon14:c.A3908G:p.Q1303R"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.678013819	2	0.5875744	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	44238510	12A2p6	cell line	sgMsh2	44238510	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	167	0	0	NA	exonic	Scd3	nonsynonymous SNV	Scd3:NM_024450:exon5:c.C782T:p.T261I	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.759375477	2	0.8834642	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	45021748	12A2p6	cell line	sgMsh2	45021748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	109	0	0	NA	exonic	Lzts2	nonsynonymous SNV	"Lzts2:NM_001130525:exon2:c.T320C:p.V107A,Lzts2:NM_001130526:exon2:c.T320C:p.V107A,Lzts2:NM_145503:exon2:c.T320C:p.V107A"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	1	0.9977792	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	45021752	12A2p6	cell line	sgMsh2	45021752	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	111	0	0	NA	exonic	Lzts2	synonymous SNV	"Lzts2:NM_001130525:exon2:c.A324G:p.E108E,Lzts2:NM_001130526:exon2:c.A324G:p.E108E,Lzts2:NM_145503:exon2:c.A324G:p.E108E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9979585	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr19	46259704	12A2p6	cell line	sgMsh2	46259704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	150	0	0	NA	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon10:c.A919G:p.T307A	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.524330687	3	0.6611567	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	46314739	12A2p6	cell line	sgMsh2	46314739	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	56	0	0	NA	exonic	Psd	nonsynonymous SNV	"Psd:NM_001347454:exon13:c.C2203T:p.R735W,Psd:NM_028627:exon13:c.C2200T:p.R734W"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.9796055	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	46330262	12A2p6	cell line	sgMsh2	46330262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	136	0	0	NA	exonic	Fbxl15	nonsynonymous SNV	"Fbxl15:NM_001378773:exon4:c.T982C:p.F328L,Fbxl15:NM_133694:exon4:c.T874C:p.F292L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.745815201	2	0.8646622	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	46515108	12A2p6	cell line	sgMsh2	46515108	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	73	0	0	NA	exonic	Trim8	synonymous SNV	Trim8:NM_053100:exon6:c.T1098C:p.P366P	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.614732529	2	0.8906586	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr19	46652483	12A2p6	cell line	sgMsh2	46652483	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	183	0	0	NA	exonic	Wbp1l	nonsynonymous SNV	"Wbp1l:NM_001177813:exon3:c.T140C:p.L47P,Wbp1l:NM_146099:exon3:c.T203C:p.L68P,Wbp1l:NM_001177812:exon4:c.T251C:p.L84P"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.759375477	2	0.914071	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M8_p20	chr19	46892273	12A2p6	cell line	sgMsh2	46892273	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	164	0	0	NA	exonic	Nt5c2	nonsynonymous SNV	"Nt5c2:NM_001377070:exon12:c.A863G:p.Y288C,Nt5c2:NM_001164363:exon13:c.A1028G:p.Y343C,Nt5c2:NM_001164365:exon13:c.A1025G:p.Y342C,Nt5c2:NM_001377066:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377068:exon13:c.A950G:p.Y317C,Nt5c2:NM_001377069:exon13:c.A950G:p.Y317C,Nt5c2:NM_029810:exon13:c.A950G:p.Y317C"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	0.9963698	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	47273354	12A2p6	cell line	sgMsh2	47273354	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	115	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon11:c.C1001T:p.P334L,Sh3pxd2a:NM_008018:exon12:c.C1085T:p.P362L"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	2	1	1	0.998275	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	47397847	12A2p6	cell line	sgMsh2	47397847	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	100	0	0	NA	exonic	Sh3pxd2a	nonsynonymous SNV	"Sh3pxd2a:NM_001164717:exon3:c.T198G:p.D66E,Sh3pxd2a:NM_008018:exon3:c.T198G:p.D66E"	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.727734832	2	0.8078774	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	47528700	12A2p6	cell line	sgMsh2	47528700	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	363	0	0	NA	exonic	Stn1	nonsynonymous SNV	Stn1:NM_175360:exon3:c.C187T:p.R63W	19qC3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.515290502	3	0.9942783	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	48645837	12A2p6	cell line	sgMsh2	48645837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	86	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon6:c.G1074A:p.T358T	19qD1	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.967299715	1	0.9878359	CGG	synonymous	NA	NA	NA	NA
M8_p20	chr19	55079283	12A2p6	cell line	sgMsh2	55079283	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	213	0	0	NA	exonic	Gpam	nonsynonymous SNV	"Gpam:NM_008149:exon14:c.C1427A:p.A476D,Gpam:NM_001356285:exon16:c.C1427A:p.A476D"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.78649603	2	0.8143569	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	56354181	12A2p6	cell line	sgMsh2	56354181	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	121	0	0	NA	exonic	Nrap	nonsynonymous SNV	"Nrap:NM_001286552:exon21:c.A2039G:p.E680G,Nrap:NM_198059:exon22:c.A2282G:p.E761G,Nrap:NM_008733:exon23:c.A2387G:p.E796G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.537890963	2	0.5846632	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	56855387	12A2p6	cell line	sgMsh2	56855387	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	109	0	0	NA	exonic	Tdrd1	frameshift deletion	"Tdrd1:NM_001002241:exon16:c.2296delT:p.S768Qfs*9,Tdrd1:NM_001002238:exon17:c.2296delT:p.S768Qfs*9,Tdrd1:NM_001002240:exon17:c.2296delT:p.S768Qfs*9,Tdrd1:NM_031387:exon17:c.2296delT:p.S768Qfs*9"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.908538517	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr19	58786064	12A2p6	cell line	sgMsh2	58786064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	83	0	0	NA	exonic	1700019N19Rik	nonsynonymous SNV	"1700019N19Rik:NM_001368688:exon6:c.A622G:p.S208G,1700019N19Rik:NM_001368689:exon6:c.A622G:p.S208G,1700019N19Rik:NM_026208:exon6:c.A646G:p.S216G"	19qD2	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.5740517	2	0.845776	CTG	nonsynonymous	CTGG	8	CTGGCTGG	NA
M8_p20	chr19	59300736	12A2p6	cell line	sgMsh2	59300736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	448	0	0	NA	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.A2231G:p.Y744C	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.772935754	2	0.9982991	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr19	59942929	12A2p6	cell line	sgMsh2	59942929	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	247	0	0	NA	exonic	Rab11fip2	synonymous SNV	Rab11fip2:NM_001033172:exon1:c.T72C:p.D24D	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9925113	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr19	60220552	12A2p6	cell line	sgMsh2	60220552	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.413	41	0	0	NA	exonic	Fam204a	frameshift deletion	"Fam204a:NM_001358273:exon3:c.269delA:p.N90Ifs*23,Fam204a:NM_029648:exon3:c.269delA:p.N90Ifs*23"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	3	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
M8_p20	chr19	60822321	12A2p6	cell line	sgMsh2	60822321	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	407	0	0	NA	exonic	Dennd10	nonsynonymous SNV	"Dennd10:NM_001347464:exon4:c.A145C:p.T49P,Dennd10:NM_001360619:exon4:c.A145C:p.T49P,Dennd10:NM_001167829:exon5:c.A508C:p.T170P,Dennd10:NM_001360620:exon5:c.A589C:p.T197P,Dennd10:NM_026437:exon5:c.A508C:p.T170P"	19qD3	chr19-6054831-61227351	6	4	2	0.9	4.068082914	NA	1	0.745815201	2	0.9998083	AAC	nonsynonymous	TGGAA	10	TGGAATGGAA	NA
M8_p20	chr2	3322572	12A2p6	cell line	sgMsh2	3322572	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	166	0	0	NA	exonic	Nmt2	nonsynonymous SNV	"Nmt2:NM_001290370:exon9:c.T1001G:p.V334G,Nmt2:NM_001290369:exon10:c.T962G:p.V321G,Nmt2:NM_001290368:exon11:c.T980G:p.V327G,Nmt2:NM_008708:exon11:c.T1094G:p.V365G"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.999799	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	5301541	12A2p6	cell line	sgMsh2	5301541	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	132	0	0	NA	exonic	Camk1d	nonsynonymous SNV	"Camk1d:NM_001290374:exon9:c.A919G:p.N307D,Camk1d:NM_001290375:exon10:c.A994G:p.N332D,Camk1d:NM_001290376:exon10:c.A970G:p.N324D,Camk1d:NM_177343:exon10:c.A994G:p.N332D"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	5919456	12A2p6	cell line	sgMsh2	5919456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	244	0	0	NA	exonic	Dhtkd1	nonsynonymous SNV	Dhtkd1:NM_001081131:exon7:c.A1345G:p.M449V	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.958259531	1	0.9998907	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	10440069	12A2p6	cell line	sgMsh2	10440069	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	292	0	0	NA	exonic	Sfmbt2	nonsynonymous SNV	"Sfmbt2:NM_001198808:exon7:c.T725G:p.I242S,Sfmbt2:NM_001369078:exon7:c.T725G:p.I242S,Sfmbt2:NM_177386:exon8:c.T725G:p.I242S"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.999999	ATT	nonsynonymous	TTGG	9	TTGGTTGGT	NA
M8_p20	chr2	10542999	12A2p6	cell line	sgMsh2	10542999	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	208	0	0	NA	exonic	Sfmbt2	stopgain	"Sfmbt2:NM_001198808:exon13:c.G1391A:p.W464X,Sfmbt2:NM_001369078:exon13:c.G1391A:p.W464X,Sfmbt2:NM_177386:exon14:c.G1391A:p.W464X"	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999658	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	12247512	12A2p6	cell line	sgMsh2	12247512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	382	0	0	NA	exonic	Itga8	nonsynonymous SNV	Itga8:NM_001001309:exon9:c.T886C:p.Y296H	2qA1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	2.32E-08	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	16512035	12A2p6	cell line	sgMsh2	16512035	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	91	0	0	NA	exonic	Plxdc2	synonymous SNV	Plxdc2:NM_026162:exon2:c.A126G:p.E42E	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.732254925	2	0.7431955	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	21826485	12A2p6	cell line	sgMsh2	21826485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	67	0	0	NA	exonic	Gpr158	nonsynonymous SNV	Gpr158:NM_001004761:exon11:c.A2395G:p.T799A	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9870797	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	22241098	12A2p6	cell line	sgMsh2	22241098	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	188	0	0	NA	exonic	Myo3a	nonsynonymous SNV	Myo3a:NM_148413:exon2:c.T55G:p.F19V	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999205	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	22623815	12A2p6	cell line	sgMsh2	22623815	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	43	0	0	NA	exonic	Gad2	nonsynonymous SNV	Gad2:NM_008078:exon3:c.A263T:p.N88I	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9652154	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	24687761	12A2p6	cell line	sgMsh2	24687761	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	143	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon17:c.T2099C:p.L700P,Cacna1b:NM_007579:exon17:c.T2099C:p.L700P"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.800056306	1	0.5035042	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	24926993	12A2p6	cell line	sgMsh2	24926993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	77	0	0	NA	exonic	Arrdc1	nonsynonymous SNV	"Arrdc1:NM_001162485:exon4:c.T320C:p.I107T,Arrdc1:NM_178408:exon4:c.T320C:p.I107T"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9914886	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	24953277	12A2p6	cell line	sgMsh2	24953277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	121	0	0	NA	exonic	Zmynd19	nonsynonymous SNV	"Zmynd19:NM_026021:exon4:c.T260C:p.V87A,Zmynd19:NM_147179:exon4:c.T143C:p.V48A"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.741295109	2	0.8357481	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25083075	12A2p6	cell line	sgMsh2	25083075	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	54	0	0	NA	exonic	Entpd8	nonsynonymous SNV	Entpd8:NM_028093:exon4:c.T392G:p.L131R	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25434930	12A2p6	cell line	sgMsh2	25434930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	45	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon8:c.A938G:p.Q313R,Abca2:NM_007379:exon8:c.A935G:p.Q312R"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9679424	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25440824	12A2p6	cell line	sgMsh2	25440824	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	138	0	0	NA	exonic	Abca2	nonsynonymous SNV	"Abca2:NM_001368624:exon23:c.C3526A:p.L1176M,Abca2:NM_007379:exon23:c.C3523A:p.L1175M"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9978559	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25569073	12A2p6	cell line	sgMsh2	25569073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	58	0	0	NA	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon7:c.A697G:p.R233G	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	0.7645218	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25608194	12A2p6	cell line	sgMsh2	25608194	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	39	0	0	NA	exonic	Rabl6	nonsynonymous SNV	Rabl6:NM_001024616:exon1:c.C49T:p.R17W	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9590719	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	25864026	12A2p6	cell line	sgMsh2	25864026	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	130	0	0	NA	exonic	Kcnt1	nonsynonymous SNV	Kcnt1:NM_001145403:exon1:c.T59C:p.L20P	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.999083	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	26395461	12A2p6	cell line	sgMsh2	26395461	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	203	0	0	NA	exonic	Pmpca	nonsynonymous SNV	Pmpca:NM_173180:exon13:c.T1448C:p.M483T	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999578	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	28450558	12A2p6	cell line	sgMsh2	28450558	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	47	0	0	NA	exonic	Ppp1r26	nonsynonymous SNV	"Ppp1r26:NM_001005420:exon4:c.C199G:p.R67G,Ppp1r26:NM_001368159:exon4:c.C199G:p.R67G"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8284947	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	28547595	12A2p6	cell line	sgMsh2	28547595	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	115	0	0	NA	exonic	Ralgds	nonsynonymous SNV	"Ralgds:NM_001145834:exon11:c.A1511G:p.D504G,Ralgds:NM_001145835:exon11:c.A1712G:p.D571G,Ralgds:NM_001145836:exon11:c.A1676G:p.D559G,Ralgds:NM_009058:exon11:c.A1547G:p.D516G"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	28615321	12A2p6	cell line	sgMsh2	28615321	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	301	0	0	NA	exonic	Gfi1b	nonsynonymous SNV	"Gfi1b:NM_001160406:exon2:c.G56A:p.R19Q,Gfi1b:NM_008114:exon2:c.G56A:p.R19Q"	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999993	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	29054815	12A2p6	cell line	sgMsh2	29054815	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	37	0	0	NA	exonic	Cfap77	nonsynonymous SNV	Cfap77:NM_001166705:exon1:c.A194G:p.K65R	2qA3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9556195	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	29702511	12A2p6	cell line	sgMsh2	29702511	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	72	0	0	NA	exonic	Rapgef1	nonsynonymous SNV	"Rapgef1:NM_001039086:exon9:c.A1400G:p.N467S,Rapgef1:NM_001362702:exon9:c.A1400G:p.N467S,Rapgef1:NM_001039087:exon10:c.A1514G:p.N505S,Rapgef1:NM_054050:exon10:c.A1514G:p.N505S"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9518645	AAC	nonsynonymous	CCCAGT	14	CCCAGTCCCAGTCC	NA
M8_p20	chr2	29787518	12A2p6	cell line	sgMsh2	29787518	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	68	0	0	NA	exonic	Trub2	synonymous SNV	"Trub2:NM_001290496:exon1:c.T94C:p.L32L,Trub2:NM_145520:exon1:c.T94C:p.L32L"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9876068	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	29872892	12A2p6	cell line	sgMsh2	29872892	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	50	0	0	NA	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon5:c.A637G:p.T213A	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.795536214	1	0.7156464	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	29992651	12A2p6	cell line	sgMsh2	29992651	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	113	0	0	NA	exonic	Sptan1	synonymous SNV	"Sptan1:NM_001177667:exon12:c.T1476C:p.N492N,Sptan1:NM_001177668:exon12:c.T1476C:p.N492N,Sptan1:NM_001309460:exon12:c.T1476C:p.N492N,Sptan1:NM_001369325:exon12:c.T1476C:p.N492N"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	0.6750706	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr2	30191939	12A2p6	cell line	sgMsh2	30191939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	70	0	0	NA	exonic	Kyat1	nonsynonymous SNV	"Kyat1:NM_001356474:exon3:c.T187C:p.Y63H,Kyat1:NM_001356475:exon4:c.T13C:p.Y5H,Kyat1:NM_172404:exon4:c.T187C:p.Y63H"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.9776105	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	30257289	12A2p6	cell line	sgMsh2	30257289	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	65	0	0	NA	exonic	Lrrc8a	nonsynonymous SNV	Lrrc8a:NM_177725:exon3:c.G2114A:p.G705D	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9859582	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	30822432	12A2p6	cell line	sgMsh2	30822432	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	69	0	0	NA	exonic	Ntmt1	synonymous SNV	"Ntmt1:NM_001356433:exon4:c.C486T:p.I162I,Ntmt1:NM_001356434:exon4:c.C396T:p.I132I,Ntmt1:NM_001356435:exon4:c.C222T:p.I74I,Ntmt1:NM_001356437:exon4:c.C222T:p.I74I,Ntmt1:NM_170592:exon4:c.C486T:p.I162I,Ntmt1:NM_001356436:exon5:c.C222T:p.I74I"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	TCA	synonymous	NA	NA	NA	NA
M8_p20	chr2	30828146	12A2p6	cell line	sgMsh2	30828146	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	27	0	0	NA	exonic	Asb6	nonsynonymous SNV	Asb6:NM_133346:exon1:c.A41G:p.Y14C	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9336948	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	31207697	12A2p6	cell line	sgMsh2	31207697	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	294	0	0	NA	exonic	Gpr107	nonsynonymous SNV	Gpr107:NM_178760:exon15:c.A1322G:p.K441R	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999991	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	31420217	12A2p6	cell line	sgMsh2	31420217	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	63	0	0	NA	exonic	Hmcn2	nonsynonymous SNV	Hmcn2:NM_001370902:exon64:c.G9812A:p.R3271Q	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.984741	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32237505	12A2p6	cell line	sgMsh2	32237505	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	87	0	0	NA	exonic	Pomt1	nonsynonymous SNV	Pomt1:NM_145145:exon2:c.C182T:p.A61V	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.836217043	1	0.8065803	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32279098	12A2p6	cell line	sgMsh2	32279098	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	212	0	0	NA	exonic	Swi5	nonsynonymous SNV	"Swi5:NM_001290552:exon5:c.A335G:p.Y112C,Swi5:NM_175190:exon5:c.A239G:p.Y80C"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999711	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32376025	12A2p6	cell line	sgMsh2	32376025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	248	0	0	NA	exonic	Ciz1	nonsynonymous SNV	"Ciz1:NM_028412:exon13:c.T1880C:p.L627P,Ciz1:NM_001252534:exon14:c.T1745C:p.L582P,Ciz1:NM_001252537:exon14:c.T1718C:p.L573P,Ciz1:NM_001252538:exon14:c.T1718C:p.L573P,Ciz1:NM_001252536:exon15:c.T1733C:p.L578P"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999937	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32578182	12A2p6	cell line	sgMsh2	32578182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	112	0	0	NA	exonic	Pip5kl1	nonsynonymous SNV	"Pip5kl1:NM_001379020:exon4:c.A485G:p.D162G,Pip5kl1:NM_001379021:exon4:c.A194G:p.D65G,Pip5kl1:NM_198191:exon4:c.A359G:p.D120G"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9980427	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32672228	12A2p6	cell line	sgMsh2	32672228	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	131	0	0	NA	exonic	Eng	synonymous SNV	"Eng:NM_001146348:exon5:c.A537G:p.A179A,Eng:NM_001146350:exon5:c.A540G:p.A180A,Eng:NM_007932:exon5:c.A540G:p.A180A"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9890646	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	32692686	12A2p6	cell line	sgMsh2	32692686	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	57	0	0	NA	exonic	Fpgs	synonymous SNV	Fpgs:NM_010236:exon2:c.T174C:p.N58N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.772935754	1	0.623076	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	32709924	12A2p6	cell line	sgMsh2	32709924	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.241	84	0	0	NA	exonic	Cdk9	nonsynonymous SNV	Cdk9:NM_130860:exon5:c.G453T:p.K151N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.993651	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	32780745	12A2p6	cell line	sgMsh2	32780745	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	57	0	0	NA	exonic	Cfap157	nonsynonymous SNV	Cfap157:NM_025619:exon3:c.A490G:p.T164A	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.820972	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	34945482	12A2p6	cell line	sgMsh2	34945482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	96	0	0	NA	exonic	Traf1	synonymous SNV	"Traf1:NM_001326601:exon9:c.A927G:p.S309S,Traf1:NM_009421:exon10:c.A927G:p.S309S"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9955847	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	34994969	12A2p6	cell line	sgMsh2	34994969	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	240	0	0	NA	exonic	Hc	nonsynonymous SNV	Hc:NM_010406:exon33:c.T4225A:p.C1409S	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999911	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	35085337	12A2p6	cell line	sgMsh2	35085337	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	225	0	0	NA	exonic	AI182371	frameshift deletion	"AI182371:NM_001243102:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_001243103:exon9:c.849delA:p.K283Nfs*21,AI182371:NM_001379434:exon9:c.852delA:p.K284Nfs*21,AI182371:NM_178885:exon9:c.849delA:p.K283Nfs*21"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr2	35160329	12A2p6	cell line	sgMsh2	35160329	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	46	0	0	NA	exonic	Cntrl	synonymous SNV	"Cntrl:NM_001379275:exon17:c.A2797C:p.R933R,Cntrl:NM_001379274:exon27:c.A4456C:p.R1486R,Cntrl:NM_012018:exon27:c.A4453C:p.R1485R"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.969227	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	35173041	12A2p6	cell line	sgMsh2	35173041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	80	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon29:c.A4651G:p.M1551V,Cntrl:NM_001379274:exon39:c.A6310G:p.M2104V,Cntrl:NM_012018:exon39:c.A6307G:p.M2103V"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9924927	CAT	nonsynonymous	TGCA	8	TGCATGCA	NA
M8_p20	chr2	35302572	12A2p6	cell line	sgMsh2	35302572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	102	0	0	NA	exonic	Gsn	nonsynonymous SNV	"Gsn:NM_001206368:exon12:c.A1498G:p.T500A,Gsn:NM_001206369:exon12:c.A1498G:p.T500A,Gsn:NM_146120:exon12:c.A1645G:p.T549A,Gsn:NM_001206367:exon13:c.A1498G:p.T500A,Gsn:NM_001362948:exon13:c.A1498G:p.T500A,Gsn:NM_001362945:exon14:c.A1531G:p.T511A,Gsn:NM_001362947:exon14:c.A1531G:p.T511A"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9970186	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	37405335	12A2p6	cell line	sgMsh2	37405335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	177	0	0	NA	exonic	Rc3h2	nonsynonymous SNV	"Rc3h2:NM_001100591:exon6:c.T668G:p.V223G,Rc3h2:NM_001290642:exon6:c.T668G:p.V223G"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998736	AAC	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr2	40597002	12A2p6	cell line	sgMsh2	40597002	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	211	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon91:c.A13732T:p.S4578C	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9996067	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	40869152	12A2p6	cell line	sgMsh2	40869152	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.221	189	0	0	NA	exonic	Lrp1b	frameshift insertion	Lrp1b:NM_053011:exon57:c.9082dupA:p.I3028Nfs*1	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.99894036	NA	NA	AAT	frameshift	T	5	TTTTT	1
M8_p20	chr2	41245981	12A2p6	cell line	sgMsh2	41245981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	213	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon32:c.T5318C:p.M1773T	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999723	CAT	nonsynonymous	CTTC	8	CTTCCTTC	NA
M8_p20	chr2	41302822	12A2p6	cell line	sgMsh2	41302822	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.124	61	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon25:c.A4152T:p.A1384A	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.560491424	2	0.7830083	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	41476706	12A2p6	cell line	sgMsh2	41476706	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	87	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon12:c.T1899C:p.S633S	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.754855385	2	0.6069009	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	41670933	12A2p6	cell line	sgMsh2	41670933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	138	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon7:c.T981C:p.N327N	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993455	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	43563104	12A2p6	cell line	sgMsh2	43563104	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.236	57	0	0	NA	exonic	Kynu	frameshift deletion	"Kynu:NM_001289593:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_001289594:exon2:c.138delT:p.Y48Ifs*14,Kynu:NM_027552:exon2:c.138delT:p.Y48Ifs*14"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8_p20	chr2	44116662	12A2p6	cell line	sgMsh2	44116662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	128	0	0	NA	exonic	Arhgap15	nonsynonymous SNV	"Arhgap15:NM_001364029:exon8:c.T655C:p.F219L,Arhgap15:NM_001301831:exon9:c.T790C:p.F264L,Arhgap15:NM_153820:exon9:c.T790C:p.F264L,Arhgap15:NM_001301832:exon10:c.T385C:p.F129L"	2qB	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.70061428	2	0.959424	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	50280373	12A2p6	cell line	sgMsh2	50280373	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	108	0	0	NA	exonic	Mmadhc	synonymous SNV	"Mmadhc:NM_001348198:exon8:c.T543A:p.L181L,Mmadhc:NM_001348199:exon8:c.T543A:p.L181L,Mmadhc:NM_133839:exon8:c.T726A:p.L242L"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	AAA	synonymous	A	5	AAAAA	NA
M8_p20	chr2	52308741	12A2p6	cell line	sgMsh2	52308741	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	325	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon14:c.A1187G:p.Y396C	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	58038939	12A2p6	cell line	sgMsh2	58038939	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	52	0	0	NA	exonic	Galnt5	nonsynonymous SNV	Galnt5:NM_172855:exon10:c.A2780G:p.Y927C	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9759459	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	58790125	12A2p6	cell line	sgMsh2	58790125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	170	0	0	NA	exonic	Upp2	nonsynonymous SNV	"Upp2:NM_029692:exon7:c.T908C:p.L303P,Upp2:NM_001289659:exon8:c.T962C:p.L321P"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998302	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	59337598	12A2p6	cell line	sgMsh2	59337598	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	73	0	0	NA	exonic	Pkp4	nonsynonymous SNV	"Pkp4:NM_001362992:exon12:c.C1661T:p.A554V,Pkp4:NM_001362999:exon12:c.C1082T:p.A361V,Pkp4:NM_001362990:exon13:c.C2099T:p.A700V,Pkp4:NM_001362991:exon13:c.C2096T:p.A699V,Pkp4:NM_001362997:exon13:c.C1082T:p.A361V,Pkp4:NM_026361:exon13:c.C2105T:p.A702V,Pkp4:NM_175464:exon13:c.C2105T:p.A702V,Pkp4:NM_001362993:exon14:c.C1661T:p.A554V,Pkp4:NM_001362994:exon14:c.C1661T:p.A554V,Pkp4:NM_001362995:exon14:c.C1658T:p.A553V,Pkp4:NM_001362996:exon14:c.C1658T:p.A553V,Pkp4:NM_001362998:exon14:c.C1082T:p.A361V"	2qC1.1	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.8858629	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	62358806	12A2p6	cell line	sgMsh2	62358806	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	336	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon16:c.G1380A:p.K460K,Dpp4:NM_010074:exon16:c.G1380A:p.K460K"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.9999542	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr2	63980119	12A2p6	cell line	sgMsh2	63980119	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.281	83	0	0	NA	exonic	Fign	frameshift deletion	"Fign:NM_021716:exon3:c.806delC:p.P269Lfs*31,Fign:NM_001267846:exon4:c.773delC:p.P258Lfs*31,Fign:NM_001267847:exon4:c.773delC:p.P258Lfs*31"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	AGG	frameshift	AGG	9	AGGAGGAGG	-1
M8_p20	chr2	65494941	12A2p6	cell line	sgMsh2	65494941	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	208	0	0	NA	exonic	Scn3a	synonymous SNV	"Scn3a:NM_001355166:exon17:c.A3378G:p.E1126E,Scn3a:NM_001355167:exon17:c.A3327G:p.E1109E,Scn3a:NM_001355168:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355169:exon17:c.A3240G:p.E1080E,Scn3a:NM_001355170:exon17:c.A3231G:p.E1077E,Scn3a:NM_001355171:exon17:c.A1473G:p.E491E,Scn3a:NM_018732:exon17:c.A3231G:p.E1077E"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999658	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr2	65670676	12A2p6	cell line	sgMsh2	65670676	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.22	190	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon2:c.T181A:p.S61T,Scn2a:NM_001346679:exon2:c.T181A:p.S61T,Scn2a:NM_001346680:exon2:c.T181A:p.S61T"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9999035	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	65670679	12A2p6	cell line	sgMsh2	65670679	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.22	190	0	0	NA	exonic	Scn2a	frameshift insertion	"Scn2a:NM_001099298:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346679:exon2:c.184_185insA:p.L62Hfs*26,Scn2a:NM_001346680:exon2:c.184_185insA:p.L62Hfs*26"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.994420268	NA	NA	CCT	frameshift	CCTT	8	CCTTCCTT	1
M8_p20	chr2	65707306	12A2p6	cell line	sgMsh2	65707306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	260	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon13:c.A2098G:p.T700A,Scn2a:NM_001346679:exon13:c.A2098G:p.T700A,Scn2a:NM_001346680:exon13:c.A2098G:p.T700A"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999962	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	66188264	12A2p6	cell line	sgMsh2	66188264	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	170	0	0	NA	exonic	Ttc21b	synonymous SNV	"Ttc21b:NM_001047604:exon27:c.A3798G:p.A1266A,Ttc21b:NM_001290669:exon27:c.A3798G:p.A1266A"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9727638	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	66323359	12A2p6	cell line	sgMsh2	66323359	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	192	0	0	NA	exonic	Scn1a	nonsynonymous SNV	"Scn1a:NM_001313997:exon13:c.G2129T:p.R710M,Scn1a:NM_018733:exon13:c.G2096T:p.R699M"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999329	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	66537372	12A2p6	cell line	sgMsh2	66537372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.345	149	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon13:c.1999delA:p.R667Gfs*12,Scn9a:NM_001290675:exon13:c.1966delA:p.R656Gfs*12"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr2	66689647	12A2p6	cell line	sgMsh2	66689647	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	143	0	0	NA	exonic	Scn7a	nonsynonymous SNV	Scn7a:NM_009135:exon18:c.C2912T:p.A971V	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9994483	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	67508658	12A2p6	cell line	sgMsh2	67508658	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	256	0	0	NA	exonic	Xirp2	synonymous SNV	"Xirp2:NM_001024618:exon7:c.T1242C:p.I414I,Xirp2:NM_001083919:exon7:c.T1242C:p.I414I"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.899498333	1	0.9960681	TTC	synonymous	NA	NA	NA	NA
M8_p20	chr2	67508701	12A2p6	cell line	sgMsh2	67508701	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	324	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T1285C:p.F429L,Xirp2:NM_001083919:exon7:c.T1285C:p.F429L"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	67511066	12A2p6	cell line	sgMsh2	67511066	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.231	341	0	0	NA	exonic	Xirp2	frameshift deletion	"Xirp2:NM_001024618:exon7:c.3650delA:p.K1218Rfs*15,Xirp2:NM_001083919:exon7:c.3650delA:p.K1218Rfs*15"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr2	67512485	12A2p6	cell line	sgMsh2	67512485	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	164	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.T5069C:p.I1690T,Xirp2:NM_001083919:exon7:c.T5069C:p.I1690T"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.9997813	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	68118819	12A2p6	cell line	sgMsh2	68118819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	348	0	0	NA	exonic	B3galt1	nonsynonymous SNV	"B3galt1:NM_020283:exon2:c.A877G:p.S293G,B3galt1:NM_001379328:exon5:c.A877G:p.S293G,B3galt1:NM_001379326:exon6:c.A877G:p.S293G,B3galt1:NM_001379327:exon6:c.A877G:p.S293G,B3galt1:NM_001379329:exon6:c.A877G:p.S293G,B3galt1:NM_001379324:exon7:c.A877G:p.S293G,B3galt1:NM_001379325:exon7:c.A877G:p.S293G"	2qC1.3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	69220863	12A2p6	cell line	sgMsh2	69220863	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	331	0	0	NA	exonic	G6pc2	nonsynonymous SNV	"G6pc2:NM_001289857:exon2:c.A299C:p.Q100P,G6pc2:NM_021331:exon2:c.A299C:p.Q100P"	2qC2	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	69483429	12A2p6	cell line	sgMsh2	69483429	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	268	0	0	NA	exonic	Lrp2	synonymous SNV	Lrp2:NM_001081088:exon39:c.T6957C:p.D2319D	2qC2	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999727	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	73272071	12A2p6	cell line	sgMsh2	73272071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	73	0	0	NA	exonic	Sp9	nonsynonymous SNV	Sp9:NM_001005343:exon1:c.A1G:p.M1V	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	74657913	12A2p6	cell line	sgMsh2	74657913	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	16	0	0	NA	exonic	Evx2	nonsynonymous SNV	Evx2:NM_007967:exon2:c.G562A:p.A188T	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	2	1	1	0.8972155	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	76593395	12A2p6	cell line	sgMsh2	76593395	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	112	0	0	NA	exonic	Osbpl6	synonymous SNV	"Osbpl6:NM_001290734:exon23:c.G2484A:p.E828E,Osbpl6:NM_001290733:exon25:c.G2577A:p.E859E,Osbpl6:NM_145525:exon25:c.G2601A:p.E867E"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9678263	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr2	76633559	12A2p6	cell line	sgMsh2	76633559	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	140	0	0	NA	exonic	Prkra	nonsynonymous SNV	Prkra:NM_011871:exon7:c.G758C:p.G253A	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993984	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	76711612	12A2p6	cell line	sgMsh2	76711612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	185	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon186:c.C76048T:p.R25350C,Ttn:NM_011652:exon307:c.C95791T:p.R31931C,Ttn:NM_001385708:exon344:c.C101623T:p.R33875C"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999098	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	76752059	12A2p6	cell line	sgMsh2	76752059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	255	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon154:c.A43508G:p.N14503S,Ttn:NM_011652:exon275:c.A63251G:p.N21084S,Ttn:NM_001385708:exon312:c.A69083G:p.N23028S"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999953	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	76755617	12A2p6	cell line	sgMsh2	76755617	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	308	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon148:c.C40788A:p.T13596T,Ttn:NM_011652:exon269:c.C60531A:p.T20177T,Ttn:NM_001385708:exon306:c.C66363A:p.T22121T"	2qC3	chr2-3197272-76814467	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9987935	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	76841091	12A2p6	cell line	sgMsh2	76841091	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	51	0	0	NA	exonic	Ttn	frameshift deletion	"Ttn:NM_011652:exon150:c.31497delA:p.G10500Dfs*30,Ttn:NM_001385708:exon154:c.34617delA:p.G11540Dfs*30"	2qC3	chr2-76814468-76867310	3	NA	NA	0.9	4.068082914	NA	NA	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr2	76894297	12A2p6	cell line	sgMsh2	76894297	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	139	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon66:c.A16370G:p.E5457G,Ttn:NM_001385708:exon68:c.A19427G:p.E6476G"	2qC3	chr2-76867311-82253895	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	0.7803028	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	76964513	12A2p6	cell line	sgMsh2	76964513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	274	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon12:c.G1903A:p.A635T,Ttn:NM_001385708:exon13:c.G2041A:p.A681T,Ttn:NM_011652:exon13:c.G2041A:p.A681T"	2qC3	chr2-76867311-82253895	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9999916	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	79338631	12A2p6	cell line	sgMsh2	79338631	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	309	0	0	NA	exonic	Cerkl	synonymous SNV	Cerkl:NM_001048176:exon11:c.T1227C:p.H409H	2qC3	chr2-76867311-82253895	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	82253508	12A2p6	cell line	sgMsh2	82253508	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	78	0	0	NA	exonic	Zfp804a	synonymous SNV	Zfp804a:NM_175513:exon3:c.T303C:p.S101S	2qD	chr2-76867311-82253895	4	2	2	0.9	4.068082914	NA	1	0.5740517	2	0.8412879	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr2	82981505	12A2p6	cell line	sgMsh2	82981505	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	124	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C8161A:p.L2721I	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.84977732	1	0.8624765	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	82990575	12A2p6	cell line	sgMsh2	82990575	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	804	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.T16645G:p.S5549A	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	1.11E-09	GTC	nonsynonymous	CAGT	8	CAGTCAGT	NA
M8_p20	chr2	83879543	12A2p6	cell line	sgMsh2	83879543	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	308	0	0	NA	exonic	Fam171b	nonsynonymous SNV	Fam171b:NM_175514:exon8:c.T1558C:p.S520P	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.691574095	2	0.9999719	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	84368591	12A2p6	cell line	sgMsh2	84368591	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	343	0	0	NA	exonic	Calcrl	synonymous SNV	Calcrl:NM_018782:exon9:c.T453C:p.S151S	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.63733299	2	0.9999021	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	85494138	12A2p6	cell line	sgMsh2	85494138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	337	0	0	NA	exonic	Fads2b	synonymous SNV	Fads2b:NM_001081664:exon5:c.A843G:p.P281P	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.682533911	2	0.9999954	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	85663713	12A2p6	cell line	sgMsh2	85663713	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	599	0	0	NA	exonic	Olfr154	synonymous SNV	Olfr154:NM_013728:exon1:c.C720A:p.T240T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.546931147	3	0.9639317	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	85721983	12A2p6	cell line	sgMsh2	85721983	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	322	0	0	NA	exonic	Olfr1009	nonsynonymous SNV	Olfr1009:NM_146572:exon1:c.C577T:p.R193W	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.736775017	2	0.9992709	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	85770074	12A2p6	cell line	sgMsh2	85770074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	431	0	0	NA	exonic	Olfr1013	nonsynonymous SNV	Olfr1013:NM_146762:exon1:c.T272C:p.I91T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.596652161	2	0.9949862	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	85786374	12A2p6	cell line	sgMsh2	85786374	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	264	0	0	NA	exonic	Olfr1015	nonsynonymous SNV	Olfr1015:NM_146571:exon1:c.T862C:p.F288L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.632812898	2	0.9991747	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	85841720	12A2p6	cell line	sgMsh2	85841720	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	292	0	0	NA	exonic	Olfr1019	stopgain	Olfr1019:NM_147015:exon1:c.C70T:p.Q24X	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.569531608	2	0.8158345	TGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	85849688	12A2p6	cell line	sgMsh2	85849688	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	464	0	0	NA	exonic	Olfr1020	nonsynonymous SNV	Olfr1020:NM_146580:exon1:c.T235G:p.S79A	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.583091884	2	0.9694714	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	86042013	12A2p6	cell line	sgMsh2	86042013	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	758	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.C697T:p.R233C	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.754855385	2	0.9999998	GCG	nonsynonymous	AGGC	8	AGGCAGGC	NA
M8_p20	chr2	86160001	12A2p6	cell line	sgMsh2	86160001	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	584	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.A368G:p.Y123C	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.804576399	2	0.9802256	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	86356297	12A2p6	cell line	sgMsh2	86356297	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.155	255	0	0	NA	exonic	Olfr1056	frameshift deletion	Olfr1056:NM_147018:exon1:c.84delT:p.F28Lfs*17	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.70061428	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr2	86356361	12A2p6	cell line	sgMsh2	86356361	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	154	0	0	NA	exonic	Olfr1056	nonsynonymous SNV	Olfr1056:NM_147018:exon1:c.C20A:p.S7Y	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9753506	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	86385946	12A2p6	cell line	sgMsh2	86385946	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	446	0	0	NA	exonic	Olfr1058	synonymous SNV	Olfr1058:NM_146391:exon1:c.T471G:p.L157L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.809096491	2	0.8902702	AAA	synonymous	NA	NA	NA	NA
M8_p20	chr2	87021776	12A2p6	cell line	sgMsh2	87021776	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	181	0	0	NA	exonic	Olfr1104	frameshift deletion	Olfr1104:NM_146767:exon1:c.767delT:p.F256Sfs*16	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.831696951	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8_p20	chr2	87108300	12A2p6	cell line	sgMsh2	87108300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	196	0	0	NA	exonic	Olfr259	nonsynonymous SNV	Olfr259:NM_146770:exon1:c.T86G:p.F29C	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.84977732	1	0.8834498	AAA	nonsynonymous	A	6	AAAAAA	NA
M8_p20	chr2	87150261	12A2p6	cell line	sgMsh2	87150261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	352	0	0	NA	exonic	Olfr1111	synonymous SNV	Olfr1111:NM_146593:exon1:c.T399C:p.S133S	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999984	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	87192179	12A2p6	cell line	sgMsh2	87192179	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	350	0	0	NA	exonic	Olfr1112	nonsynonymous SNV	Olfr1112:NM_146661:exon1:c.T491C:p.I164T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.687054003	2	0.9999963	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87388238	12A2p6	cell line	sgMsh2	87388238	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	518	0	0	NA	exonic	Olfr1122	synonymous SNV	Olfr1122:NM_147031:exon1:c.T532C:p.L178L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.9999997	TTT	synonymous	NA	NA	NA	NA
M8_p20	chr2	87508605	12A2p6	cell line	sgMsh2	87508605	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	218	0	0	NA	exonic	Pramel6	nonsynonymous SNV	"Pramel6:NM_001356546:exon2:c.A148G:p.K50E,Pramel6:NM_178249:exon2:c.A148G:p.K50E,Pramel6:NM_001356544:exon3:c.A148G:p.K50E,Pramel6:NM_001356545:exon3:c.A148G:p.K50E"	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.596652161	2	0.9714079	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87634924	12A2p6	cell line	sgMsh2	87634924	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	382	0	0	NA	exonic	Olfr1132	synonymous SNV	Olfr1132:NM_146836:exon1:c.C822A:p.T274T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	2	1	1	2.32E-08	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	87656102	12A2p6	cell line	sgMsh2	87656102	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.156	350	0	0	NA	exonic	Olfr1134	frameshift insertion	Olfr1134:NM_147030:exon2:c.817dupA:p.M273Nfs*22	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.705134372	NA	NA	CAT	frameshift	NA	NA	NA	1
M8_p20	chr2	87656225	12A2p6	cell line	sgMsh2	87656225	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	561	0	0	NA	exonic	Olfr1134	nonsynonymous SNV	Olfr1134:NM_147030:exon2:c.A695G:p.E232G	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.72321474	2	0.9999999	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87672071	12A2p6	cell line	sgMsh2	87672071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	266	0	0	NA	exonic	Olfr1135	synonymous SNV	Olfr1135:NM_146660:exon1:c.T295C:p.L99L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.768415662	2	0.9703551	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	87711851	12A2p6	cell line	sgMsh2	87711851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	549	0	0	NA	exonic	Olfr1137	synonymous SNV	Olfr1137:NM_001011833:exon1:c.T54C:p.S18S	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.565011516	2	0.61168	TAC	synonymous	TACT	8	TACTTACT	NA
M8_p20	chr2	87746420	12A2p6	cell line	sgMsh2	87746420	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	451	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A223G:p.T75A	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.8965923	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87746678	12A2p6	cell line	sgMsh2	87746678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	290	0	0	NA	exonic	Olfr1140	nonsynonymous SNV	Olfr1140:NM_146642:exon1:c.A481G:p.I161V	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.673493727	2	0.9999768	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87810335	12A2p6	cell line	sgMsh2	87810335	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	433	0	0	NA	exonic	Olfr1145	nonsynonymous SNV	Olfr1145:NM_146320:exon1:c.A514C:p.I172L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	2	1	1	3.58E-09	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87903101	12A2p6	cell line	sgMsh2	87903101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	500	0	0	NA	exonic	Olfr1154	nonsynonymous SNV	Olfr1154:NM_146647:exon1:c.T574C:p.Y192H	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.727734832	2	0.9999982	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	87990156	12A2p6	cell line	sgMsh2	87990156	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	323	0	0	NA	exonic	Olfr1158	nonsynonymous SNV	Olfr1158:NM_146645:exon1:c.T44C:p.L15P	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.9998474	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88006632	12A2p6	cell line	sgMsh2	88006632	T	G	SNV	Mutect2;MuSe;Vardict	3	0.089	574	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.A145C:p.M49L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.402288199	3	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88024827	12A2p6	cell line	sgMsh2	88024827	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	445	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.T104C:p.I35T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.777455846	2	0.996959	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88224136	12A2p6	cell line	sgMsh2	88224136	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	832	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.G895A:p.V299M	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.63733299	2	3.19E-09	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88274217	12A2p6	cell line	sgMsh2	88274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	406	0	0	NA	exonic	Olfr1173	synonymous SNV	Olfr1173:NM_207566:exon1:c.A831G:p.T277T	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.84977732	1	0.9294462	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	88391594	12A2p6	cell line	sgMsh2	88391594	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	393	0	0	NA	exonic	Olfr1178	nonsynonymous SNV	Olfr1178:NM_001011868:exon1:c.A346C:p.M116L	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.614732529	2	0.9993603	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88412257	12A2p6	cell line	sgMsh2	88412257	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	281	0	0	NA	exonic	Olfr1180	stopgain	Olfr1180:NM_146918:exon1:c.C400T:p.Q134X	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	0.9998898	TGT	nonsynonymous	TCTG	8	TCTGTCTG	NA
M8_p20	chr2	88412518	12A2p6	cell line	sgMsh2	88412518	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	334	0	0	NA	exonic	Olfr1180	nonsynonymous SNV	Olfr1180:NM_146918:exon1:c.A139G:p.T47A	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.483649858	3	0.99971	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88487664	12A2p6	cell line	sgMsh2	88487664	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	182	0	0	NA	exonic	Olfr1184	nonsynonymous SNV	Olfr1184:NM_146823:exon1:c.A931G:p.S311G	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.894978241	1	0.9845506	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88525797	12A2p6	cell line	sgMsh2	88525797	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	411	0	0	NA	exonic	Olfr1186	synonymous SNV	Olfr1186:NM_146530:exon1:c.T213C:p.S71S	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.745815201	2	0.9998264	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr2	88683472	12A2p6	cell line	sgMsh2	88683472	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	328	0	0	NA	exonic	Olfr1195	nonsynonymous SNV	Olfr1195:NM_146753:exon1:c.G259A:p.E87K	2qD	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.800056306	2	0.8722383	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	88728866	12A2p6	cell line	sgMsh2	88728866	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	579	0	0	NA	exonic	Olfr1197	synonymous SNV	Olfr1197:NM_001005225:exon1:c.A732T:p.V244V	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.759375477	2	0.9999785	CTA	synonymous	ACT	8	ACTACTAC	NA
M8_p20	chr2	88746125	12A2p6	cell line	sgMsh2	88746125	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	482	0	0	NA	exonic	Olfr1198	synonymous SNV	Olfr1198:NM_207567:exon1:c.C762A:p.T254T	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.673493727	2	4.10E-09	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	88973488	12A2p6	cell line	sgMsh2	88973488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	347	0	0	NA	exonic	Olfr1213	synonymous SNV	Olfr1213:NM_146898:exon3:c.T402C:p.I134I	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.745815201	2	0.9991548	TAA	synonymous	NA	NA	NA	NA
M8_p20	chr2	89325883	12A2p6	cell line	sgMsh2	89325883	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	209	0	0	NA	exonic	Olfr1232	nonsynonymous SNV	Olfr1232:NM_146323:exon1:c.A296G:p.Q99R	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.727734832	2	0.990581	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	89528023	12A2p6	cell line	sgMsh2	89528023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	448	0	0	NA	exonic	Olfr1243	nonsynonymous SNV	Olfr1243:NM_146969:exon1:c.A386G:p.H129R	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.587611976	2	0.9833063	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	89657042	12A2p6	cell line	sgMsh2	89657042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	557	0	0	NA	exonic	Olfr1250	nonsynonymous SNV	Olfr1250:NM_146965:exon1:c.T398C:p.I133T	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	2	1	1	1.01E-09	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	89835084	12A2p6	cell line	sgMsh2	89835084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	364	0	0	NA	exonic	Olfr1256	nonsynonymous SNV	Olfr1256:NM_146983:exon1:c.T860C:p.L287P	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.641853082	2	0.9999643	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	90015799	12A2p6	cell line	sgMsh2	90015799	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	349	0	0	NA	exonic	Olfr1263	frameshift deletion	Olfr1263:NM_146794:exon1:c.868delA:p.R291Gfs*2	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.646373174	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr2	90021796	12A2p6	cell line	sgMsh2	90021796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	326	0	0	NA	exonic	Olfr1264	nonsynonymous SNV	Olfr1264:NM_021368:exon1:c.T269C:p.L90P	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.87237778	1	0.9867117	AAG	nonsynonymous	AAGA	8	AAGAAAGA	NA
M8_p20	chr2	90735467	12A2p6	cell line	sgMsh2	90735467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	403	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon37:c.A4172G:p.K1391R	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.750335293	2	0.9996582	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	91055505	12A2p6	cell line	sgMsh2	91055505	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	440	0	0	NA	exonic	Psmc3	synonymous SNV	Psmc3:NM_008948:exon4:c.T342C:p.I114I	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.673493727	2	0.9999999	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	91163515	12A2p6	cell line	sgMsh2	91163515	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	510	0	0	NA	exonic	Madd	nonsynonymous SNV	"Madd:NM_001177720:exon15:c.C2737T:p.R913W,Madd:NM_145527:exon16:c.C2737T:p.R913W,Madd:NM_001177719:exon17:c.C2797T:p.R933W"	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	2	1	1	1.10E-09	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	91267251	12A2p6	cell line	sgMsh2	91267251	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	411	0	0	NA	exonic	Arfgap2	nonsynonymous SNV	"Arfgap2:NM_001166024:exon4:c.A391G:p.T131A,Arfgap2:NM_023854:exon4:c.A391G:p.T131A"	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.93565907	1	0.9999931	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	91284247	12A2p6	cell line	sgMsh2	91284247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	300	0	0	NA	exonic	1110051M20Rik	nonsynonymous SNV	"1110051M20Rik:NM_001311144:exon5:c.T439C:p.F147L,1110051M20Rik:NM_175123:exon5:c.T439C:p.F147L"	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.863337596	1	0.9667635	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	91931373	12A2p6	cell line	sgMsh2	91931373	T	-	Deletion	Strelka2;Vardict	2	0.2292	144	0	0	NA	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr2	92380460	12A2p6	cell line	sgMsh2	92380460	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	217	0	0	NA	exonic	Pex16	nonsynonymous SNV	Pex16:NM_145122:exon10:c.T938C:p.V313A	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.791016122	2	0.7818435	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	94371808	12A2p6	cell line	sgMsh2	94371808	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	88	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon9:c.A1148C:p.K383T,Ttc17:NM_001355691:exon9:c.A1148C:p.K383T,Ttc17:NM_183106:exon9:c.A1148C:p.K383T"	2qE1	chr2-82255917-94430128	6	4	2	0.9	4.068082914	NA	1	0.791016122	1	0.5937595	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	97630892	12A2p6	cell line	sgMsh2	97630892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	202	0	0	NA	exonic	Lrrc4c	nonsynonymous SNV	"Lrrc4c:NM_001289744:exon2:c.T1862C:p.V621A,Lrrc4c:NM_178725:exon3:c.T1862C:p.V621A,Lrrc4c:NM_001363049:exon4:c.T1862C:p.V621A,Lrrc4c:NM_001289743:exon7:c.T1862C:p.V621A,Lrrc4c:NM_001289742:exon8:c.T1862C:p.V621A,Lrrc4c:NM_001363048:exon8:c.T1862C:p.V621A,Lrrc4c:NM_001363047:exon9:c.T1862C:p.V621A"	2qE1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.999956	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	102400017	12A2p6	cell line	sgMsh2	102400017	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	375	0	0	NA	exonic	Trim44	nonsynonymous SNV	Trim44:NM_020267:exon1:c.T668G:p.L223R	2qE2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.890458149	1	0.9985184	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	107295521	12A2p6	cell line	sgMsh2	107295521	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	253	0	0	NA	exonic	Kcna4	nonsynonymous SNV	Kcna4:NM_021275:exon2:c.A599G:p.E200G	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999949	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	109306914	12A2p6	cell line	sgMsh2	109306914	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	173	0	0	NA	exonic	Kif18a	nonsynonymous SNV	Kif18a:NM_139303:exon11:c.A1490G:p.K497R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9998504	AAG	nonsynonymous	AAAG	10	AAAGAAAGAA	NA
M8_p20	chr2	111162040	12A2p6	cell line	sgMsh2	111162040	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	151	0	0	NA	exonic	A26c3	synonymous SNV	A26c3:NM_001378593:exon24:c.T1938C:p.N646N	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996217	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	111227991	12A2p6	cell line	sgMsh2	111227991	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	553	0	0	NA	exonic	A26c3	synonymous SNV	"A26c3:NM_001378593:exon3:c.T456C:p.A152A,A26c3:NM_026248:exon3:c.T456C:p.A152A"	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	1.02E-09	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	111315817	12A2p6	cell line	sgMsh2	111315817	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	401	0	0	NA	exonic	Olfr1280	nonsynonymous SNV	Olfr1280:NM_146908:exon1:c.G337A:p.V113M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	1.10E-08	GGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	111335694	12A2p6	cell line	sgMsh2	111335694	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.264	1093	0	0	NA	exonic	Olfr1282	nonsynonymous SNV	Olfr1282:NM_146907:exon1:c.G383T:p.R128M	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	1	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	111335798	12A2p6	cell line	sgMsh2	111335798	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	642	0	0	NA	exonic	Olfr1282	synonymous SNV	Olfr1282:NM_146907:exon1:c.C279A:p.S93S	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	111379635	12A2p6	cell line	sgMsh2	111379635	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	385	0	0	NA	exonic	Olfr1284	nonsynonymous SNV	Olfr1284:NM_146381:exon1:c.T634C:p.F212L	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	2.05E-08	CTT	nonsynonymous	CTT	15	CTTCTTCTTGCTTCT	NA
M8_p20	chr2	111483772	12A2p6	cell line	sgMsh2	111483772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	250	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.A341G:p.K114R	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9992727	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	111483866	12A2p6	cell line	sgMsh2	111483866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	354	0	0	NA	exonic	Olfr1289	synonymous SNV	Olfr1289:NM_146404:exon1:c.A435G:p.Q145Q	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	111621399	12A2p6	cell line	sgMsh2	111621399	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	262	0	0	NA	exonic	Olfr1297	nonsynonymous SNV	Olfr1297:NM_146888:exon1:c.T674C:p.V225A	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999965	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	111960686	12A2p6	cell line	sgMsh2	111960686	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	315	0	0	NA	exonic	Olfr1308	nonsynonymous SNV	Olfr1308:NM_207151:exon1:c.C386A:p.P129H	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999996	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	112860487	12A2p6	cell line	sgMsh2	112860487	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	100	0	0	NA	exonic	Ryr3	nonsynonymous SNV	Ryr3:NM_001319156:exon26:c.T3217G:p.F1073V	2qE3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.996757	AAC	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr2	114197568	12A2p6	cell line	sgMsh2	114197568	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	164	0	0	NA	exonic	Zfp770	nonsynonymous SNV	Zfp770:NM_175466:exon2:c.A19G:p.M7V	2qE4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9997218	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	117177703	12A2p6	cell line	sgMsh2	117177703	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	179	0	0	NA	exonic	Spred1	nonsynonymous SNV	Spred1:NM_033524:exon7:c.A1089G:p.I363M	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998839	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	118461795	12A2p6	cell line	sgMsh2	118461795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	114	0	0	NA	exonic	Eif2ak4	synonymous SNV	"Eif2ak4:NM_001355383:exon25:c.A3255G:p.S1085S,Eif2ak4:NM_001177806:exon27:c.A3489G:p.S1163S,Eif2ak4:NM_013719:exon28:c.A3825G:p.S1275S"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.822656767	1	0.7302057	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	118549106	12A2p6	cell line	sgMsh2	118549106	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	47	0	0	NA	exonic	Bmf	nonsynonymous SNV	Bmf:NM_138313:exon2:c.T188A:p.L63Q	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.985380084	1	0.9648079	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	118792434	12A2p6	cell line	sgMsh2	118792434	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	31	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.T3646C:p.C1216R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.943494	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	119139420	12A2p6	cell line	sgMsh2	119139420	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.363	95	0	0	NA	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr2	119248782	12A2p6	cell line	sgMsh2	119248782	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	53	0	0	NA	exonic	Spint1	synonymous SNV	Spint1:NM_016907:exon11:c.A1344G:p.V448V	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9769169	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	119615650	12A2p6	cell line	sgMsh2	119615650	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	44	0	0	NA	exonic	Oip5	nonsynonymous SNV	Oip5:NM_001042653:exon3:c.T376C:p.Y126H	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.962614	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	119771217	12A2p6	cell line	sgMsh2	119771217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	64	0	0	NA	exonic	Rpap1	nonsynonymous SNV	"Rpap1:NM_001163701:exon16:c.G2261A:p.S754N,Rpap1:NM_177294:exon17:c.G2261A:p.S754N"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9799027	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	119916686	12A2p6	cell line	sgMsh2	119916686	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	84	0	0	NA	exonic	Mga	nonsynonymous SNV	"Mga:NM_001164274:exon3:c.T1317G:p.H439Q,Mga:NM_013720:exon3:c.T1317G:p.H439Q"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.993651	ATC	nonsynonymous	CCAT	9	CCATCCATC	NA
M8_p20	chr2	120385778	12A2p6	cell line	sgMsh2	120385778	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.175	120	0	0	NA	exonic	Tmem87a	frameshift deletion	"Tmem87a:NM_001110496:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_001110497:exon7:c.630delT:p.F210Lfs*2,Tmem87a:NM_173734:exon7:c.630delT:p.F210Lfs*2"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.791016122	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr2	120619100	12A2p6	cell line	sgMsh2	120619100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	286	0	0	NA	exonic	Haus2	synonymous SNV	"Haus2:NM_001290808:exon5:c.A342G:p.E114E,Haus2:NM_001290807:exon6:c.A528G:p.E176E,Haus2:NM_025475:exon6:c.A624G:p.E208E"	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999987	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	120668076	12A2p6	cell line	sgMsh2	120668076	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	174	0	0	NA	exonic	Stard9	synonymous SNV	Stard9:NM_001370940:exon7:c.A520C:p.R174R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998566	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	120718818	12A2p6	cell line	sgMsh2	120718818	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	146	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon28:c.T3704C:p.V1235A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995329	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	120728368	12A2p6	cell line	sgMsh2	120728368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	173	0	0	NA	exonic	Cdan1	nonsynonymous SNV	Cdan1:NM_026891:exon8:c.A1348G:p.S450G	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998504	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	121336461	12A2p6	cell line	sgMsh2	121336461	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	159	0	0	NA	exonic	Ppip5k1	nonsynonymous SNV	Ppip5k1:NM_178795:exon22:c.A2608C:p.S870R	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.99973	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	122337637	12A2p6	cell line	sgMsh2	122337637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	228	0	0	NA	exonic	Duox1	nonsynonymous SNV	Duox1:NM_001099297:exon24:c.T3242C:p.V1081A	2qE5	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.999301	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	125383693	12A2p6	cell line	sgMsh2	125383693	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	87	0	0	NA	exonic	Fbn1	synonymous SNV	Fbn1:NM_007993:exon14:c.T1638C:p.G546G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9944015	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	125563992	12A2p6	cell line	sgMsh2	125563992	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	108	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon28:c.G4619T:p.G1540V	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	125571702	12A2p6	cell line	sgMsh2	125571702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	91	0	0	NA	exonic	Cep152	nonsynonymous SNV	Cep152:NM_001081091:exon23:c.A3709G:p.R1237G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9952666	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	127028276	12A2p6	cell line	sgMsh2	127028276	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	133	0	0	NA	exonic	Ap4e1	synonymous SNV	Ap4e1:NM_175550:exon5:c.T522C:p.D174D	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.999192	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr2	127244968	12A2p6	cell line	sgMsh2	127244968	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	299	0	0	NA	exonic	Ciao1	stopgain	Ciao1:NM_025296:exon6:c.A724T:p.K242X	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9997627	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	127342469	12A2p6	cell line	sgMsh2	127342469	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	132	0	0	NA	exonic	Astl	synonymous SNV	"Astl:NM_001291003:exon2:c.T174A:p.I58I,Astl:NM_172539:exon2:c.T111A:p.I37I"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	TTA	synonymous	NA	NA	NA	NA
M8_p20	chr2	127534877	12A2p6	cell line	sgMsh2	127534877	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	265	0	0	NA	exonic	Prom2	nonsynonymous SNV	"Prom2:NM_138750:exon14:c.T1679C:p.V560A,Prom2:NM_178047:exon14:c.T1679C:p.V560A"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.854297412	1	0.9257032	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	128762161	12A2p6	cell line	sgMsh2	128762161	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	244	0	0	NA	exonic	Mertk	nonsynonymous SNV	Mertk:NM_008587:exon8:c.T1214G:p.I405S	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999925	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	129113650	12A2p6	cell line	sgMsh2	129113650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	0	0	NA	exonic	Polr1b	nonsynonymous SNV	Polr1b:NM_009086:exon9:c.T1480C:p.W494R	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9518871	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	129206398	12A2p6	cell line	sgMsh2	129206398	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	158	0	0	NA	exonic	Slc20a1	synonymous SNV	Slc20a1:NM_015747:exon6:c.T702C:p.G234G	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr2	130030004	12A2p6	cell line	sgMsh2	130030005	AA	CC	DBS	Mutect2;Vardict	2	0.236	317	0	0	NA	exonic	Tgm3	nonframeshift substitution	Tgm3:NM_009374:exon7:c.951_952CC:p.N318H	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	130437919	12A2p6	cell line	sgMsh2	130437919	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	124	0	0	NA	exonic	Vps16	synonymous SNV	Vps16:NM_030559:exon3:c.A147G:p.L49L	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.781975938	2	0.5932693	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr2	130592006	12A2p6	cell line	sgMsh2	130592006	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	132	0	0	NA	exonic	Ubox5	nonsynonymous SNV	"Ubox5:NM_001255994:exon6:c.A1420G:p.R474G,Ubox5:NM_080562:exon6:c.A1420G:p.R474G,Ubox5:NM_001255993:exon7:c.A1420G:p.R474G"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	130615821	12A2p6	cell line	sgMsh2	130615821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	113	0	0	NA	exonic	Fastkd5	nonsynonymous SNV	"Fastkd5:NM_001377124:exon2:c.T713C:p.M238T,Fastkd5:NM_001377125:exon2:c.T713C:p.M238T,Fastkd5:NM_001146084:exon3:c.T713C:p.M238T,Fastkd5:NM_198176:exon3:c.T713C:p.M238T"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9981234	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	131147179	12A2p6	cell line	sgMsh2	131147179	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	133	0	0	NA	exonic	1700037H04Rik	nonsynonymous SNV	"1700037H04Rik:NM_001311138:exon5:c.G415A:p.V139M,1700037H04Rik:NM_001361375:exon5:c.G283A:p.V95M,1700037H04Rik:NM_026091:exon5:c.G406A:p.V136M"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.999192	ACC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	131274254	12A2p6	cell line	sgMsh2	131274254	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	66	0	0	NA	exonic	Pank2	synonymous SNV	"Pank2:NM_001355679:exon2:c.T591C:p.D197D,Pank2:NM_001355683:exon2:c.T591C:p.D197D,Pank2:NM_153501:exon2:c.T591C:p.D197D,Pank2:NM_001355681:exon3:c.T99C:p.D33D,Pank2:NM_001355682:exon3:c.T99C:p.D33D"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9865305	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr2	131274262	12A2p6	cell line	sgMsh2	131274262	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	59	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_001355679:exon2:c.C599A:p.T200K,Pank2:NM_001355683:exon2:c.C599A:p.T200K,Pank2:NM_153501:exon2:c.C599A:p.T200K,Pank2:NM_001355681:exon3:c.C107A:p.T36K,Pank2:NM_001355682:exon3:c.C107A:p.T36K"	2qF1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9819865	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	132075453	12A2p6	cell line	sgMsh2	132075453	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	108	0	0	NA	exonic	Slc23a2	nonsynonymous SNV	Slc23a2:NM_001355431:exon7:c.A775G:p.T259A	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	132240580	12A2p6	cell line	sgMsh2	132240580	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	177	0	0	NA	exonic	Tmem230	nonsynonymous SNV	"Tmem230:NM_001141971:exon4:c.T269C:p.F90S,Tmem230:NM_027478:exon4:c.T269C:p.F90S"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998736	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	132810462	12A2p6	cell line	sgMsh2	132810462	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	117	0	0	NA	exonic	Trmt6	nonsynonymous SNV	"Trmt6:NM_001356442:exon4:c.A323G:p.K108R,Trmt6:NM_175113:exon4:c.A416G:p.K139R"	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9967189	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	134643895	12A2p6	cell line	sgMsh2	134643895	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.334	12	0	0	NA	exonic	Tmx4	synonymous SNV	Tmx4:NM_029148:exon1:c.C111A:p.P37P	2qF2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.8791353	TGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	136550160	12A2p6	cell line	sgMsh2	136550160	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	115	0	0	NA	exonic	Ankef1	nonsynonymous SNV	Ankef1:NM_175667:exon7:c.A1268G:p.K423R	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	AAG	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr2	140120680	12A2p6	cell line	sgMsh2	140120680	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	105	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon14:c.A2470G:p.M824V	2qF3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9973721	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	142702654	12A2p6	cell line	sgMsh2	142702654	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	193	0	0	NA	exonic	Kif16b	nonsynonymous SNV	"Kif16b:NM_001081133:exon22:c.A3452C:p.N1151T,Kif16b:NM_001355123:exon23:c.A3485C:p.N1162T"	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9989321	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	143813612	12A2p6	cell line	sgMsh2	143813612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	74	0	0	NA	exonic	Pcsk2	nonsynonymous SNV	Pcsk2:NM_008792:exon12:c.G1715A:p.G572E	2qG1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9903514	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	148700454	12A2p6	cell line	sgMsh2	148700454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	161	0	0	NA	exonic	Napb	synonymous SNV	Napb:NM_019632:exon8:c.C585T:p.N195N	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997518	GGT	synonymous	NA	NA	NA	NA
M8_p20	chr2	152004194	12A2p6	cell line	sgMsh2	152004194	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	exonic	Slc52a3	nonsynonymous SNV	"Slc52a3:NM_001164819:exon2:c.T74C:p.V25A,Slc52a3:NM_001164820:exon2:c.T74C:p.V25A,Slc52a3:NM_027172:exon2:c.T74C:p.V25A"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9590719	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	152318786	12A2p6	cell line	sgMsh2	152318786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	80	0	0	NA	exonic	Rbck1	nonsynonymous SNV	"Rbck1:NM_001083921:exon10:c.G1229A:p.R410K,Rbck1:NM_001355282:exon11:c.G779A:p.R260K,Rbck1:NM_019705:exon11:c.G1229A:p.R410K"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	7.68E-05	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	152374250	12A2p6	cell line	sgMsh2	152374250	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	214	0	0	NA	exonic	Nrsn2	nonsynonymous SNV	"Nrsn2:NM_001009948:exon2:c.A32G:p.H11R,Nrsn2:NM_001370750:exon2:c.A32G:p.H11R"	2qG3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999735	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	152875604	12A2p6	cell line	sgMsh2	152875604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	199	0	0	NA	exonic	Tpx2	synonymous SNV	"Tpx2:NM_001141975:exon6:c.T420C:p.S140S,Tpx2:NM_001141976:exon6:c.T420C:p.S140S,Tpx2:NM_001141977:exon6:c.T420C:p.S140S,Tpx2:NM_001141978:exon6:c.T420C:p.S140S,Tpx2:NM_028109:exon6:c.T420C:p.S140S"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr2	153144474	12A2p6	cell line	sgMsh2	153144474	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	307	0	0	NA	exonic	Hck	nonsynonymous SNV	"Hck:NM_001172117:exon11:c.G1079T:p.R360M,Hck:NM_010407:exon11:c.G1142T:p.R381M"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	154504710	12A2p6	cell line	sgMsh2	154504710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	150	0	0	NA	exonic	Cbfa2t2	synonymous SNV	"Cbfa2t2:NM_009823:exon3:c.C336T:p.R112R,Cbfa2t2:NM_172860:exon3:c.C336T:p.R112R"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996054	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr2	154689632	12A2p6	cell line	sgMsh2	154689632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	147	0	0	NA	exonic	Chmp4b	nonsynonymous SNV	Chmp4b:NM_029362:exon2:c.A305G:p.N102S	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	0.6217563	AAC	nonsynonymous	CCAACA	13	CCAACACCAACAC	NA
M8_p20	chr2	155168787	12A2p6	cell line	sgMsh2	155168787	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	147	0	0	NA	exonic	Itch	synonymous SNV	"Itch:NM_008395:exon4:c.T174C:p.N58N,Itch:NM_001243712:exon5:c.T174C:p.N58N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8695004	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr2	155386694	12A2p6	cell line	sgMsh2	155386694	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	22	0	0	NA	exonic	Trp53inp2	synonymous SNV	Trp53inp2:NM_178111:exon4:c.T568C:p.L190L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9190916	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr2	155834529	12A2p6	cell line	sgMsh2	155834529	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	132	0	0	NA	exonic	Fam83c	nonsynonymous SNV	Fam83c:NM_027788:exon1:c.C182T:p.A61V	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	156019958	12A2p6	cell line	sgMsh2	156019958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	78	0	0	NA	exonic	Fer1l4	nonsynonymous SNV	Fer1l4:NM_001136556:exon43:c.T5438C:p.M1813T	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9918373	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	156127698	12A2p6	cell line	sgMsh2	156127698	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.214	205	0	0	NA	exonic	Nfs1	nonsynonymous SNV	Nfs1:NM_010911:exon9:c.T1028C:p.V343A	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9997735	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	157027463	12A2p6	cell line	sgMsh2	157027463	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	13	0	0	NA	exonic	Soga1	nonsynonymous SNV	Soga1:NM_001164663:exon11:c.A3251T:p.Q1084L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.8839738	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	157104841	12A2p6	cell line	sgMsh2	157104841	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	446	0	0	NA	exonic	Samhd1	synonymous SNV	"Samhd1:NM_001139520:exon14:c.T1632C:p.N544N,Samhd1:NM_018851:exon14:c.T1632C:p.N544N"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	2.49E-09	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr2	157561705	12A2p6	cell line	sgMsh2	157561705	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.308	19	0	0	NA	exonic	Nnat	synonymous SNV	"Nnat:NM_001291128:exon3:c.A324G:p.P108P,Nnat:NM_001291129:exon3:c.A312G:p.P104P"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9088309	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr2	158007755	12A2p6	cell line	sgMsh2	158007755	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	153	0	0	NA	exonic	Tti1	synonymous SNV	Tti1:NM_029282:exon2:c.A1563G:p.Q521Q	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.795536214	2	0.5677434	CTT	synonymous	GCTT	8	GCTTGCTT	NA
M8_p20	chr2	158313555	12A2p6	cell line	sgMsh2	158313555	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	67	0	0	NA	exonic	Lbp	synonymous SNV	Lbp:NM_008489:exon4:c.C451A:p.R151R	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9870797	GCG	synonymous	NA	NA	NA	NA
M8_p20	chr2	158495606	12A2p6	cell line	sgMsh2	158495606	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	119	0	0	NA	exonic	Ralgapb	nonsynonymous SNV	"Ralgapb:NM_001291138:exon30:c.C4450A:p.L1484I,Ralgapb:NM_001291137:exon31:c.C4486A:p.L1496I,Ralgapb:NM_001363006:exon31:c.C4474A:p.L1492I,Ralgapb:NM_001369183:exon31:c.C3745A:p.L1249I"	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.804576399	1	6.77E-06	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	158768178	12A2p6	cell line	sgMsh2	158768178	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	24	0	0	NA	exonic	Fam83d	nonsynonymous SNV	Fam83d:NM_027975:exon1:c.C65T:p.P22L	2qH1	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9248111	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	160774585	12A2p6	cell line	sgMsh2	160774585	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	287	0	0	NA	exonic	Plcg1	synonymous SNV	Plcg1:NM_021280:exon33:c.G3888A:p.K1296K	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999988	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr2	161014152	12A2p6	cell line	sgMsh2	161014152	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	335	0	0	NA	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon15:c.A2186G:p.N729S	2qH2	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	GTT	nonsynonymous	TGTTG	10	TGTTGTGTTG	NA
M8_p20	chr2	165397272	12A2p6	cell line	sgMsh2	165397272	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	47	0	0	NA	exonic	Ocstamp	synonymous SNV	Ocstamp:NM_029021:exon2:c.C993A:p.A331A	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9704615	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr2	166644807	12A2p6	cell line	sgMsh2	166644807	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	70	0	0	NA	exonic	Prex1	nonsynonymous SNV	Prex1:NM_177782:exon3:c.A341G:p.Y114C	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.542411055	2	0.7265759	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	168183899	12A2p6	cell line	sgMsh2	168183899	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	332	0	0	NA	exonic	Adnp	nonsynonymous SNV	"Adnp:NM_001310088:exon3:c.A791G:p.Y264C,Adnp:NM_009628:exon4:c.A1475G:p.Y492C,Adnp:NM_001310086:exon5:c.A1475G:p.Y492C"	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	168925880	12A2p6	cell line	sgMsh2	168925880	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	77	0	0	NA	exonic	Zfp64	nonsynonymous SNV	Zfp64:NM_009564:exon6:c.C1811T:p.S604L	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.791016122	1	0.6272436	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	172454295	12A2p6	cell line	sgMsh2	172454295	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	116	0	0	NA	exonic	Gcnt7	nonsynonymous SNV	Gcnt7:NM_001039560:exon2:c.A608G:p.H203R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9983461	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	172870250	12A2p6	cell line	sgMsh2	172870250	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	117	0	0	NA	exonic	Bmp7	nonsynonymous SNV	Bmp7:NM_007557:exon7:c.T1180C:p.C394R	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.727734832	2	0.8742522	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	173528205	12A2p6	cell line	sgMsh2	173528205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	77	0	0	NA	exonic	1700021F07Rik	nonsynonymous SNV	1700021F07Rik:NM_028158:exon4:c.T272C:p.V91A	2qH3	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9914886	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	174646241	12A2p6	cell line	sgMsh2	174646241	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	35	0	0	NA	exonic	Zfp831	nonsynonymous SNV	Zfp831:NM_001099328:exon1:c.C2708A:p.P903H	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	2	1	1	0.9518871	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	174761546	12A2p6	cell line	sgMsh2	174761546	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	49	0	0	NA	exonic	Edn3	nonsynonymous SNV	Edn3:NM_007903:exon2:c.G86T:p.G29V	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.795536214	1	0.7179445	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	177833020	12A2p6	cell line	sgMsh2	177833020	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	343	0	0	NA	exonic	Gm14325	synonymous SNV	Gm14325:NM_001024849:exon4:c.A268C:p.R90R	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr2	180464112	12A2p6	cell line	sgMsh2	180464112	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	106	0	0	NA	exonic	Slco4a1	nonsynonymous SNV	"Slco4a1:NM_001355218:exon2:c.G86A:p.G29E,Slco4a1:NM_148933:exon2:c.G86A:p.G29E"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9974804	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	180583499	12A2p6	cell line	sgMsh2	180583499	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	133	0	0	NA	exonic	Mrgbp	nonsynonymous SNV	Mrgbp:NM_028479:exon3:c.A247G:p.T83A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.646373174	2	0.9884473	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	180675363	12A2p6	cell line	sgMsh2	180675363	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	191	0	0	NA	exonic	Dido1	synonymous SNV	"Dido1:NM_001291433:exon7:c.A1650T:p.A550A,Dido1:NM_175551:exon7:c.A1650T:p.A550A,Dido1:NM_177852:exon7:c.A1650T:p.A550A"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.99993	GTG	synonymous	GAAG	8	GAAGGAAG	NA
M8_p20	chr2	180714861	12A2p6	cell line	sgMsh2	180714861	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	167	0	0	NA	exonic	Gid8	nonsynonymous SNV	"Gid8:NM_029607:exon2:c.A290G:p.N97S,Gid8:NM_001289651:exon3:c.A290G:p.N97S,Gid8:NM_001289652:exon3:c.A290G:p.N97S"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998073	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	180776339	12A2p6	cell line	sgMsh2	180776339	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	73	0	0	NA	exonic	Bhlhe23	synonymous SNV	Bhlhe23:NM_080641:exon1:c.G405A:p.K135K	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr2	180979220	12A2p6	cell line	sgMsh2	180979220	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	95	0	0	NA	exonic	Arfgap1	nonsynonymous SNV	"Arfgap1:NM_001177710:exon9:c.A608G:p.Q203R,Arfgap1:NM_001177706:exon10:c.A767G:p.Q256R,Arfgap1:NM_001177708:exon10:c.A767G:p.Q256R,Arfgap1:NM_001177709:exon10:c.A767G:p.Q256R,Arfgap1:NM_001363037:exon10:c.A638G:p.Q213R,Arfgap1:NM_001177707:exon11:c.A767G:p.Q256R,Arfgap1:NM_001363035:exon11:c.A797G:p.Q266R,Arfgap1:NM_145760:exon11:c.A767G:p.Q256R,Arfgap1:NM_001363036:exon12:c.A797G:p.Q266R,Arfgap1:NM_001374670:exon12:c.A797G:p.Q266R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9780056	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	181253897	12A2p6	cell line	sgMsh2	181253897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	92	0	0	NA	exonic	Gmeb2	synonymous SNV	Gmeb2:NM_198169:exon10:c.A1479G:p.A493A	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr2	181570146	12A2p6	cell line	sgMsh2	181570146	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	315	0	0	NA	exonic	Uckl1	nonsynonymous SNV	"Uckl1:NM_001379005:exon11:c.A1169G:p.Y390C,Uckl1:NM_026765:exon11:c.A1166G:p.Y389C"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9996516	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr2	181685886	12A2p6	cell line	sgMsh2	181685886	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	283	0	0	NA	exonic	Tcea2	nonsynonymous SNV	"Tcea2:NM_001356342:exon5:c.T346C:p.C116R,Tcea2:NM_001356343:exon5:c.T346C:p.C116R,Tcea2:NM_009326:exon5:c.T424C:p.C142R"	2qH4	chr2-97628777-181807525	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9999978	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	5399531	12A2p6	cell line	sgMsh2	5399531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	126	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.T4826C:p.M1609T,Zfhx4:NM_030708:exon10:c.T4748C:p.M1583T"	3qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	5399749	12A2p6	cell line	sgMsh2	5399749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	75	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5044T:p.H1682Y,Zfhx4:NM_030708:exon10:c.C4966T:p.H1656Y"	3qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CCA	nonsynonymous	ACCC	9	ACCCACCCA	NA
M8_p20	chr3	5412507	12A2p6	cell line	sgMsh2	5412507	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	224	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon11:c.T10184C:p.V3395A,Zfhx4:NM_030708:exon11:c.T10106C:p.V3369A"	3qA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	14115763	12A2p6	cell line	sgMsh2	14115763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	278	0	0	NA	exonic	Ralyl	nonsynonymous SNV	"Ralyl:NM_001163329:exon5:c.G265A:p.A89T,Ralyl:NM_001163330:exon5:c.G265A:p.A89T,Ralyl:NM_001163328:exon6:c.G484A:p.A162T,Ralyl:NM_001357033:exon6:c.G484A:p.A162T,Ralyl:NM_001357034:exon6:c.G526A:p.A176T,Ralyl:NM_001357035:exon6:c.G484A:p.A162T,Ralyl:NM_001357036:exon6:c.G526A:p.A176T,Ralyl:NM_178631:exon7:c.G484A:p.A162T"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999982	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	14481097	12A2p6	cell line	sgMsh2	14481097	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	221	0	0	NA	exonic	Slc7a12	nonsynonymous SNV	Slc7a12:NM_080852:exon1:c.G301T:p.G101C	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.800056306	2	0.6903556	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	14562481	12A2p6	cell line	sgMsh2	14562481	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	95	0	0	NA	exonic	Lrrcc1	synonymous SNV	"Lrrcc1:NM_001163579:exon17:c.A2742G:p.Q914Q,Lrrcc1:NM_001163580:exon17:c.A2694G:p.Q898Q,Lrrcc1:NM_028915:exon17:c.A2742G:p.Q914Q"	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr3	17948824	12A2p6	cell line	sgMsh2	17948824	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	98	0	0	NA	exonic	Cypt12	stoploss	Cypt12:NM_029289:exon1:c.G360T:p.X120Y	3qA1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9964726	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	19134875	12A2p6	cell line	sgMsh2	19134875	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	207	0	0	NA	exonic	Armc1	stopgain	"Armc1:NM_001357689:exon6:c.C625T:p.Q209X,Armc1:NM_028840:exon6:c.C625T:p.Q209X"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.280245712	3	1.04E-08	TGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	20018856	12A2p6	cell line	sgMsh2	20018856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	144	0	0	NA	exonic	Hps3	synonymous SNV	"Hps3:NM_001146323:exon8:c.G1062A:p.L354L,Hps3:NM_001146324:exon8:c.G1458A:p.L486L,Hps3:NM_080634:exon8:c.G1458A:p.L486L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994918	ACA	synonymous	NA	NA	NA	NA
M8_p20	chr3	20082759	12A2p6	cell line	sgMsh2	20082759	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	56	0	0	NA	exonic	Hltf	nonsynonymous SNV	"Hltf:NM_001355097:exon11:c.A1159C:p.I387L,Hltf:NM_009210:exon11:c.A1159C:p.I387L"	3qA2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9578346	AAT	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr3	27469004	12A2p6	cell line	sgMsh2	27469004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	133	0	0	NA	exonic	Fndc3b	synonymous SNV	"Fndc3b:NM_173182:exon13:c.A1425G:p.G475G,Fndc3b:NM_001356953:exon14:c.A1425G:p.G475G"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9944235	TTC	synonymous	NA	NA	NA	NA
M8_p20	chr3	28794409	12A2p6	cell line	sgMsh2	28794409	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	336	0	0	NA	exonic	Eif5a2	nonsynonymous SNV	Eif5a2:NM_177586:exon5:c.G416A:p.C139Y	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	30800215	12A2p6	cell line	sgMsh2	30800215	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	191	0	0	NA	exonic	Sec62	nonsynonymous SNV	"Sec62:NM_001357528:exon2:c.G121A:p.G41S,Sec62:NM_027016:exon2:c.G121A:p.G41S"	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.99993	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	32462764	12A2p6	cell line	sgMsh2	32462764	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	184	0	0	NA	exonic	Pik3ca	nonsynonymous SNV	Pik3ca:NM_008839:exon21:c.A3140G:p.H1047R	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999059	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	33839106	12A2p6	cell line	sgMsh2	33839106	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	84	0	0	NA	exonic	Ccdc39	nonsynonymous SNV	Ccdc39:NM_026222:exon3:c.T329G:p.I110S	3qA3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.993651	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	35897813	12A2p6	cell line	sgMsh2	35897813	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	141	0	0	NA	exonic	Dcun1d1	nonsynonymous SNV	"Dcun1d1:NM_001205361:exon5:c.T583G:p.L195V,Dcun1d1:NM_001205362:exon5:c.T538G:p.L180V,Dcun1d1:NM_033623:exon5:c.T538G:p.L180V"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994233	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	36563190	12A2p6	cell line	sgMsh2	36563190	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	185	0	0	NA	exonic	Exosc9	synonymous SNV	Exosc9:NM_019393:exon10:c.T1092C:p.I364I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999098	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr3	36568646	12A2p6	cell line	sgMsh2	36568646	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	112	0	0	NA	exonic	Ccna2	nonsynonymous SNV	Ccna2:NM_009828:exon5:c.A706G:p.M236V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	37041373	12A2p6	cell line	sgMsh2	37041373	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	356	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon79:c.G13524T:p.M4508I	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	37439317	12A2p6	cell line	sgMsh2	37439317	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	188	0	0	NA	exonic	Spata5	nonsynonymous SNV	"Spata5:NM_001163511:exon9:c.T1675C:p.Y559H,Spata5:NM_001310473:exon9:c.T1675C:p.Y559H,Spata5:NM_021343:exon9:c.T1672C:p.Y558H"	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999205	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	39007295	12A2p6	cell line	sgMsh2	39007295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	144	0	0	NA	exonic	Fat4	synonymous SNV	Fat4:NM_183221:exon16:c.G13026A:p.V4342V	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9630176	TGC	synonymous	NA	NA	NA	NA
M8_p20	chr3	46446486	12A2p6	cell line	sgMsh2	46446486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	226	0	0	NA	exonic	Pabpc4l	nonsynonymous SNV	Pabpc4l:NM_001101479:exon2:c.A722G:p.E241G	3qB	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.999984	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	54222596	12A2p6	cell line	sgMsh2	54222596	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	96	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.G782T:p.S261I,Trpc4:NM_001253683:exon3:c.G782T:p.S261I,Trpc4:NM_016984:exon3:c.G782T:p.S261I"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9961633	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	54696952	12A2p6	cell line	sgMsh2	54696952	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	230	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon3:c.A41G:p.Y14C,Supt20:NM_001358017:exon3:c.A41G:p.Y14C,Supt20:NM_019995:exon4:c.A41G:p.Y14C"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999021	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	54712177	12A2p6	cell line	sgMsh2	54712177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	180	0	0	NA	exonic	Supt20	nonsynonymous SNV	"Supt20:NM_001358015:exon13:c.A1082G:p.D361G,Supt20:NM_001358017:exon13:c.A1079G:p.D360G,Supt20:NM_019995:exon14:c.A1082G:p.D361G"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998887	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	54782403	12A2p6	cell line	sgMsh2	54782403	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.181	30	0	0	NA	exonic	Smad9	nonsynonymous SNV	Smad9:NM_019483:exon2:c.A43G:p.S15G	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	0.7897957	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	55126586	12A2p6	cell line	sgMsh2	55126586	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	221	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon4:c.C1061T:p.P354L,Spg20:NM_001144987:exon5:c.C1232T:p.P411L,Spg20:NM_144895:exon5:c.C1232T:p.P411L"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999802	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	55135502	12A2p6	cell line	sgMsh2	55135502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	144	0	0	NA	exonic	Spg20	nonsynonymous SNV	"Spg20:NM_001144988:exon8:c.T1667C:p.I556T,Spg20:NM_001144987:exon9:c.T1838C:p.I613T,Spg20:NM_144895:exon9:c.T1838C:p.I613T"	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994918	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	55681028	12A2p6	cell line	sgMsh2	55681028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	172	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon48:c.A7289G:p.Y2430C	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.999844	GTA	nonsynonymous	GGTA	9	GGTAGGTAG	NA
M8_p20	chr3	55955482	12A2p6	cell line	sgMsh2	55955482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	72	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon32:c.T5348C:p.V1783A	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.93862	TAC	nonsynonymous	ACC	8	ACCACCAC	NA
M8_p20	chr3	56004774	12A2p6	cell line	sgMsh2	56004774	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	293	0	0	NA	exonic	Nbea	nonsynonymous SNV	Nbea:NM_030595:exon22:c.C3591A:p.D1197E	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9999917	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	56031502	12A2p6	cell line	sgMsh2	56031502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	295	0	0	NA	exonic	Nbea	stopgain	Nbea:NM_030595:exon16:c.G2164T:p.E722X	3qC	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999991	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	58555628	12A2p6	cell line	sgMsh2	58555628	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	99	0	0	NA	exonic	Eif2a	frameshift deletion	Eif2a:NM_001005509:exon12:c.1591delA:p.I533Lfs*3	3qD	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr3	59115071	12A2p6	cell line	sgMsh2	59115071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	269	0	0	NA	exonic	P2ry14	nonsynonymous SNV	"P2ry14:NM_001287120:exon2:c.T967C:p.S323P,P2ry14:NM_001287122:exon2:c.T967C:p.S323P,P2ry14:NM_001287123:exon2:c.T967C:p.S323P,P2ry14:NM_001287124:exon2:c.T994C:p.S332P,P2ry14:NM_133200:exon2:c.T967C:p.S323P,P2ry14:NM_001008497:exon3:c.T967C:p.S323P,P2ry14:NM_001287119:exon3:c.T967C:p.S323P,P2ry14:NM_001287121:exon3:c.T967C:p.S323P"	3qD	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999974	GAA	nonsynonymous	TTTTGG	12	TTTTGGTTTTGG	NA
M8_p20	chr3	59327897	12A2p6	cell line	sgMsh2	59327897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	203	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon5:c.T4862C:p.I1621T	3qD	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999578	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	67449726	12A2p6	cell line	sgMsh2	67449726	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	158	0	0	NA	exonic	Gfm1	synonymous SNV	Gfm1:NM_138591:exon9:c.A1131G:p.E377E	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9686219	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr3	68898566	12A2p6	cell line	sgMsh2	68898566	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	417	0	0	NA	exonic	Ift80	synonymous SNV	Ift80:NM_026641:exon19:c.A2142G:p.T714T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9999569	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr3	68927791	12A2p6	cell line	sgMsh2	68927791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	134	0	0	NA	exonic	Ift80	nonsynonymous SNV	Ift80:NM_026641:exon13:c.T1316C:p.I439T	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992253	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	69032881	12A2p6	cell line	sgMsh2	69032881	A	-	Deletion	Strelka2;Vardict	2	0.1895	95	0	0	NA	exonic	Smc4	frameshift deletion	"Smc4:NM_001356976:exon21:c.3073delA:p.K1027Rfs*8,Smc4:NM_133786:exon21:c.3283delA:p.K1097Rfs*8"	3qE1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.856557458	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
M8_p20	chr3	72904307	12A2p6	cell line	sgMsh2	72904307	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	247	0	0	NA	exonic	Sis	nonsynonymous SNV	Sis:NM_001081137:exon43:c.C4910A:p.A1637D	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9981208	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	79652377	12A2p6	cell line	sgMsh2	79652377	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	83	0	0	NA	exonic	Rxfp1	nonsynonymous SNV	Rxfp1:NM_212452:exon15:c.A1136G:p.Y379C	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.555971332	2	0.7763967	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	80709440	12A2p6	cell line	sgMsh2	80709440	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	281	0	0	NA	exonic	Gria2	nonsynonymous SNV	"Gria2:NM_001039195:exon9:c.C1204A:p.L402I,Gria2:NM_001083806:exon9:c.C1204A:p.L402I,Gria2:NM_001357924:exon9:c.C1204A:p.L402I,Gria2:NM_001357927:exon9:c.C1204A:p.L402I,Gria2:NM_013540:exon9:c.C1204A:p.L402I"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999984	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	80860236	12A2p6	cell line	sgMsh2	80860236	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	134	0	0	NA	exonic	Glrb	frameshift deletion	"Glrb:NM_001345996:exon6:c.676delA:p.I226Lfs*49,Glrb:NM_001281969:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_001345955:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345956:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345957:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345958:exon7:c.382delA:p.I128Lfs*36,Glrb:NM_010298:exon7:c.676delA:p.I226Lfs*36,Glrb:NM_001345959:exon8:c.382delA:p.I128Lfs*36"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.876897873	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr3	82359959	12A2p6	cell line	sgMsh2	82359959	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	226	0	0	NA	exonic	Map9	nonsynonymous SNV	"Map9:NM_001081230:exon3:c.G145A:p.D49N,Map9:NM_001356457:exon3:c.G145A:p.D49N"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.999984	TGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	83008529	12A2p6	cell line	sgMsh2	83008529	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	187	0	0	NA	exonic	Fgg	stopgain	"Fgg:NM_001317105:exon3:c.C276A:p.Y92X,Fgg:NM_133862:exon3:c.C276A:p.Y92X"	3qE3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.9656798	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	83940594	12A2p6	cell line	sgMsh2	83940594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	162	0	0	NA	exonic	Tmem131l	synonymous SNV	Tmem131l:NM_172681:exon11:c.T963C:p.H321H	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997621	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr3	84970854	12A2p6	cell line	sgMsh2	84970854	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	383	0	0	NA	exonic	Fbxw7	nonsynonymous SNV	"Fbxw7:NM_080428:exon7:c.T947C:p.I316T,Fbxw7:NM_001177774:exon9:c.T1190C:p.I397T,Fbxw7:NM_001177773:exon10:c.T1190C:p.I397T"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9999998	ATA	nonsynonymous	TAGT	8	TAGTTAGT	NA
M8_p20	chr3	86295172	12A2p6	cell line	sgMsh2	86295172	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	284	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon6:c.T729A:p.N243K,Lrba:NM_001077688:exon6:c.T729A:p.N243K,Lrba:NM_030695:exon6:c.T729A:p.N243K"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9999886	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	86781589	12A2p6	cell line	sgMsh2	86781589	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	286	0	0	NA	exonic	Lrba	nonsynonymous SNV	Lrba:NM_030695:exon57:c.G8493T:p.M2831I	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9997727	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	87802537	12A2p6	cell line	sgMsh2	87802537	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	43	0	0	NA	exonic	Insrr	nonsynonymous SNV	Insrr:NM_011832:exon3:c.A796G:p.T266A	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9652154	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	88449737	12A2p6	cell line	sgMsh2	88449737	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	115	0	0	NA	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon9:c.T926C:p.L309P,Sema4a:NM_001163490:exon9:c.T926C:p.L309P,Sema4a:NM_001163491:exon9:c.T926C:p.L309P,Sema4a:NM_013658:exon9:c.T926C:p.L309P"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	7.60E-05	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	89150368	12A2p6	cell line	sgMsh2	89150368	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	75	0	0	NA	exonic	Hcn3	nonsynonymous SNV	Hcn3:NM_008227:exon5:c.A1220T:p.E407V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9907462	CTC	nonsynonymous	GCTC	8	GCTCGCTC	NA
M8_p20	chr3	89266743	12A2p6	cell line	sgMsh2	89266743	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.341	66	0	0	NA	exonic	Dpm3	nonsynonymous SNV	Dpm3:NM_026767:exon2:c.T10G:p.L4V	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9865305	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	89461933	12A2p6	cell line	sgMsh2	89461933	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	114	0	0	NA	exonic	Pmvk	synonymous SNV	"Pmvk:NM_026784:exon2:c.G147A:p.E49E,Pmvk:NM_027348:exon2:c.G84A:p.E28E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9982008	AGG	synonymous	AGG	8	AGGAGGAG	NA
M8_p20	chr3	89747241	12A2p6	cell line	sgMsh2	89747241	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	105	0	0	NA	exonic	Adar	nonsynonymous SNV	"Adar:NM_001038587:exon10:c.G1935T:p.R645S,Adar:NM_001146296:exon10:c.G2679T:p.R893S,Adar:NM_001357958:exon10:c.G2796T:p.R932S,Adar:NM_019655:exon10:c.G2601T:p.R867S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9942905	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	90079822	12A2p6	cell line	sgMsh2	90079822	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	43	0	0	NA	exonic	Tpm3	nonsynonymous SNV	"Tpm3:NM_001253738:exon1:c.C91A:p.L31I,Tpm3:NM_001253740:exon1:c.C91A:p.L31I,Tpm3:NM_001271764:exon1:c.C91A:p.L31I,Tpm3:NM_001293749:exon1:c.C91A:p.L31I,Tpm3:NM_001357581:exon1:c.C91A:p.L31I"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.822656767	1	0.7876719	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	90087733	12A2p6	cell line	sgMsh2	90087733	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	176	0	0	NA	exonic	Tpm3	synonymous SNV	"Tpm3:NM_001253738:exon4:c.G444A:p.E148E,Tpm3:NM_001253740:exon4:c.G444A:p.E148E,Tpm3:NM_001271764:exon4:c.G444A:p.E148E,Tpm3:NM_001293749:exon4:c.G444A:p.E148E,Tpm3:NM_001357581:exon4:c.G444A:p.E148E,Tpm3:NM_001293748:exon5:c.G555A:p.E185E,Tpm3:NM_022314:exon5:c.G555A:p.E185E"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.881417965	1	0.9689031	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr3	90190923	12A2p6	cell line	sgMsh2	90190923	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	199	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon31:c.C4181T:p.S1394L	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9614891	TCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	92457041	12A2p6	cell line	sgMsh2	92457041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	337	0	0	NA	exonic	Sprr3	synonymous SNV	"Sprr3:NM_001204427:exon2:c.T495C:p.S165S,Sprr3:NM_011478:exon2:c.T495C:p.S165S"	3qF1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr3	94389202	12A2p6	cell line	sgMsh2	94389202	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	114	0	0	NA	exonic	Rorc	synonymous SNV	"Rorc:NM_001293734:exon4:c.C687T:p.C229C,Rorc:NM_011281:exon5:c.C750T:p.C250C"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	8.06E-05	GCA	synonymous	NA	NA	NA	NA
M8_p20	chr3	94524252	12A2p6	cell line	sgMsh2	94524252	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	524	0	0	NA	exonic	Snx27	synonymous SNV	"Snx27:NM_001082484:exon5:c.A834G:p.A278A,Snx27:NM_029721:exon5:c.A834G:p.A278A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	1.06E-09	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr3	95008482	12A2p6	cell line	sgMsh2	95008482	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	69	0	0	NA	exonic	Zfp687	nonsynonymous SNV	"Zfp687:NM_001357863:exon7:c.A2978G:p.K993R,Zfp687:NM_030074:exon7:c.A2978G:p.K993R"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	CTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr3	95063659	12A2p6	cell line	sgMsh2	95063659	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.379	86	0	0	NA	exonic	Pip5k1a	nonsynonymous SNV	"Pip5k1a:NM_001293707:exon13:c.T1591A:p.L531M,Pip5k1a:NM_008847:exon13:c.T1588A:p.L530M"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9941616	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	95118277	12A2p6	cell line	sgMsh2	95118277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	201	0	0	NA	exonic	Vps72	nonsynonymous SNV	Vps72:NM_009336:exon2:c.T170G:p.V57G	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999541	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	95617169	12A2p6	cell line	sgMsh2	95617169	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	284	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A541G:p.T181A,Golph3l:NM_001177670:exon5:c.A730G:p.T244A,Golph3l:NM_146133:exon5:c.A730G:p.T244A"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.718694648	2	0.9994711	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	95617184	12A2p6	cell line	sgMsh2	95617184	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	290	0	0	NA	exonic	Golph3l	nonsynonymous SNV	"Golph3l:NM_001177669:exon4:c.A556C:p.T186P,Golph3l:NM_001177670:exon5:c.A745C:p.T249P,Golph3l:NM_146133:exon5:c.A745C:p.T249P"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.759375477	2	0.9903354	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	95754372	12A2p6	cell line	sgMsh2	95754372	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	95	0	0	NA	exonic	Tars2	nonsynonymous SNV	"Tars2:NM_001163617:exon2:c.G225T:p.K75N,Tars2:NM_001163618:exon2:c.G225T:p.K75N,Tars2:NM_001163619:exon2:c.G225T:p.K75N,Tars2:NM_027931:exon2:c.G225T:p.K75N"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	95899475	12A2p6	cell line	sgMsh2	95899475	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	134	0	0	NA	exonic	Car14	nonsynonymous SNV	"Car14:NM_001355750:exon7:c.C676T:p.L226F,Car14:NM_011797:exon7:c.C676T:p.L226F,Car14:NM_001355751:exon8:c.C649T:p.L217F"	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9992253	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	96046404	12A2p6	cell line	sgMsh2	96046404	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	140	0	0	NA	exonic	Vps45	nonsynonymous SNV	Vps45:NM_013841:exon7:c.T635C:p.L212P	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8673956	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	96650407	12A2p6	cell line	sgMsh2	96650407	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.342	196	0	0	NA	exonic	Itga10	synonymous SNV	Itga10:NM_001302471:exon8:c.A765G:p.E255E	3qF2.1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999433	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr3	97605207	12A2p6	cell line	sgMsh2	97605207	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	137	0	0	NA	exonic	Chd1l	nonsynonymous SNV	Chd1l:NM_026539:exon2:c.T113C:p.I38T	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993173	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	97629120	12A2p6	cell line	sgMsh2	97629120	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	205	0	0	NA	exonic	Fmo5	synonymous SNV	"Fmo5:NM_001161765:exon1:c.G60A:p.K20K,Fmo5:NM_001161763:exon2:c.G60A:p.K20K,Fmo5:NM_010232:exon2:c.G60A:p.K20K"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999612	AGT	synonymous	NA	NA	NA	NA
M8_p20	chr3	101003510	12A2p6	cell line	sgMsh2	101003510	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	103	0	0	NA	exonic	Cd101	nonsynonymous SNV	Cd101:NM_001167906:exon8:c.A2843G:p.Q948R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9817856	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	101056598	12A2p6	cell line	sgMsh2	101056598	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	100	0	0	NA	exonic	Ptgfrn	nonsynonymous SNV	Ptgfrn:NM_011197:exon6:c.C1697T:p.T566I	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.996757	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	103137180	12A2p6	cell line	sgMsh2	103137180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	150	0	0	NA	exonic	Dennd2c	nonsynonymous SNV	"Dennd2c:NM_001384113:exon5:c.T1076C:p.M359T,Dennd2c:NM_177857:exon5:c.T1076C:p.M359T"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996054	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	103344483	12A2p6	cell line	sgMsh2	103344483	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	383	0	0	NA	exonic	Trim33	nonsynonymous SNV	"Trim33:NM_001079830:exon15:c.A2647G:p.R883G,Trim33:NM_053170:exon15:c.A2647G:p.R883G"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	2.23E-08	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	103761538	12A2p6	cell line	sgMsh2	103761538	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	137	0	0	NA	exonic	Hipk1	nonsynonymous SNV	"Hipk1:NM_001301304:exon6:c.A1541G:p.N514S,Hipk1:NM_001301306:exon6:c.A1541G:p.N514S,Hipk1:NM_010432:exon6:c.A1541G:p.N514S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9993173	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	103809057	12A2p6	cell line	sgMsh2	103809057	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	34	0	0	NA	exonic	Dclre1b	nonsynonymous SNV	Dclre1b:NM_133865:exon1:c.T32A:p.I11N	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9499093	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	103915080	12A2p6	cell line	sgMsh2	103915080	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	28	0	0	NA	exonic	Rsbn1	synonymous SNV	"Rsbn1:NM_001356556:exon1:c.T630C:p.D210D,Rsbn1:NM_001356557:exon1:c.T630C:p.D210D,Rsbn1:NM_001356558:exon1:c.T630C:p.D210D,Rsbn1:NM_172684:exon1:c.T630C:p.D210D"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9362888	ATC	synonymous	NA	NA	NA	NA
M8_p20	chr3	104842708	12A2p6	cell line	sgMsh2	104842708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	99	0	0	NA	exonic	Capza1	synonymous SNV	"Capza1:NM_001355044:exon3:c.C108T:p.V36V,Capza1:NM_009797:exon3:c.C108T:p.V36V"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9966178	GGA	synonymous	NA	NA	NA	NA
M8_p20	chr3	105005546	12A2p6	cell line	sgMsh2	105005546	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	123	0	0	NA	exonic	Cttnbp2nl	nonsynonymous SNV	"Cttnbp2nl:NM_001163332:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_001163333:exon6:c.G1021T:p.A341S,Cttnbp2nl:NM_030249:exon6:c.G1021T:p.A341S"	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9987684	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	105907366	12A2p6	cell line	sgMsh2	105907366	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	259	0	0	NA	exonic	Adora3	nonsynonymous SNV	Adora3:NM_009631:exon2:c.T431A:p.L144Q	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.999996	CTG	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr3	105978389	12A2p6	cell line	sgMsh2	105978389	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	154	0	0	NA	exonic	Ovgp1	nonsynonymous SNV	Ovgp1:NM_007696:exon6:c.T599G:p.L200R	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996666	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	105981256	12A2p6	cell line	sgMsh2	105981256	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	206	0	0	NA	exonic	Ovgp1	frameshift deletion	Ovgp1:NM_007696:exon9:c.927delA:p.K311Nfs*33	3qF2.2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr3	106733075	12A2p6	cell line	sgMsh2	106733075	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	185	0	0	NA	exonic	Lrif1	nonsynonymous SNV	Lrif1:NM_001039488:exon2:c.T1475C:p.I492T	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999098	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	107195563	12A2p6	cell line	sgMsh2	107195563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	115	0	0	NA	exonic	Kcna10	synonymous SNV	Kcna10:NM_001081140:exon2:c.C1509T:p.S503S	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr3	107331352	12A2p6	cell line	sgMsh2	107331352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	110	0	0	NA	exonic	Rbm15	nonsynonymous SNV	Rbm15:NM_001045807:exon1:c.A1729G:p.R577G	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.9107479	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	107554552	12A2p6	cell line	sgMsh2	107554552	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	42	0	0	NA	exonic	Ubl4b	nonsynonymous SNV	Ubl4b:NM_026261:exon1:c.T391G:p.L131V	3qF2.3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.9637689	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	108356310	12A2p6	cell line	sgMsh2	108356310	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	198	0	0	NA	exonic	Sort1	nonsynonymous SNV	"Sort1:NM_019972:exon18:c.T2324G:p.I775S,Sort1:NM_001271599:exon19:c.T2423G:p.I808S"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999479	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	108393128	12A2p6	cell line	sgMsh2	108393128	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	30	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon33:c.A8615G:p.H2872R,Celsr2:NM_017392:exon33:c.A8615G:p.H2872R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.8819142	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	108412795	12A2p6	cell line	sgMsh2	108412795	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	118	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.A2700G:p.P900P,Celsr2:NM_017392:exon1:c.A2700G:p.P900P"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9984797	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr3	108427274	12A2p6	cell line	sgMsh2	108427274	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	56	0	0	NA	exonic	Sars	nonsynonymous SNV	"Sars:NM_001204979:exon10:c.A1373G:p.E458G,Sars:NM_011319:exon11:c.A1445G:p.E482G"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9796055	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	108624645	12A2p6	cell line	sgMsh2	108624645	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	152	0	0	NA	exonic	Wdr47	nonsynonymous SNV	"Wdr47:NM_001358053:exon7:c.A1343G:p.Q448R,Wdr47:NM_001358054:exon7:c.A1346G:p.Q449R,Wdr47:NM_001358055:exon7:c.A1346G:p.Q449R,Wdr47:NM_181400:exon7:c.A1346G:p.Q449R"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	108862930	12A2p6	cell line	sgMsh2	108862930	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	61	0	0	NA	exonic	Fndc7	nonsynonymous SNV	"Fndc7:NM_001165965:exon9:c.T1679C:p.I560T,Fndc7:NM_177091:exon10:c.T1937C:p.I646T"	3qF3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9834199	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	116120811	12A2p6	cell line	sgMsh2	116120811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	122	0	0	NA	exonic	Vcam1	synonymous SNV	Vcam1:NM_011693:exon5:c.G1191A:p.Q397Q	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9987155	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr3	116539105	12A2p6	cell line	sgMsh2	116539105	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	61	0	0	NA	exonic	Dbt	nonsynonymous SNV	"Dbt:NM_001357344:exon5:c.T29G:p.V10G,Dbt:NM_010022:exon6:c.T572G:p.V191G"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.836217043	1	0.8102457	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	116579629	12A2p6	cell line	sgMsh2	116579629	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	175	0	0	NA	exonic	Lrrc39	nonsynonymous SNV	"Lrrc39:NM_001379629:exon8:c.T937C:p.S313P,Lrrc39:NM_001379630:exon8:c.T904C:p.S302P,Lrrc39:NM_175413:exon8:c.T937C:p.S313P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9530939	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	116687359	12A2p6	cell line	sgMsh2	116687359	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	174	0	0	NA	exonic	Slc35a3	nonsynonymous SNV	"Slc35a3:NM_144902:exon3:c.T254C:p.L85P,Slc35a3:NM_001362374:exon4:c.T254C:p.L85P"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.795536214	2	0.6265121	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	116772426	12A2p6	cell line	sgMsh2	116772426	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	198	0	0	NA	exonic	Agl	nonsynonymous SNV	"Agl:NM_001081326:exon23:c.A3044G:p.Y1015C,Agl:NM_001362367:exon23:c.A3044G:p.Y1015C"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.795536214	2	0.6893027	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	116895593	12A2p6	cell line	sgMsh2	116895593	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	165	0	0	NA	exonic	Frrs1	nonsynonymous SNV	"Frrs1:NM_001113478:exon10:c.A1112C:p.K371T,Frrs1:NM_009146:exon10:c.A1112C:p.K371T"	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997904	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	123464785	12A2p6	cell line	sgMsh2	123464785	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	236	0	0	NA	exonic	Prss12	nonsynonymous SNV	Prss12:NM_008939:exon2:c.A527G:p.E176G	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999895	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	124321766	12A2p6	cell line	sgMsh2	124321766	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	93	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.A574G:p.I192V	3qG1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	126936750	12A2p6	cell line	sgMsh2	126936750	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	191	0	0	NA	exonic	Ank2	synonymous SNV	"Ank2:NM_001034168:exon4:c.C1683T:p.I561I,Ank2:NM_178655:exon19:c.C2034T:p.I678I,Ank2:NM_001327939:exon40:c.C10584T:p.I3528I,Ank2:NM_001327938:exon42:c.C10830T:p.I3610I"	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	2	1	1	0.99993	CGA	synonymous	NA	NA	NA	NA
M8_p20	chr3	127561543	12A2p6	cell line	sgMsh2	127561543	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	282	0	0	NA	exonic	Zgrf1	synonymous SNV	Zgrf1:NM_197997:exon6:c.A417G:p.S139S	3qG2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9990426	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr3	129848815	12A2p6	cell line	sgMsh2	129848815	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	246	0	0	NA	exonic	Cfi	nonsynonymous SNV	"Cfi:NM_001329552:exon2:c.A317C:p.N106T,Cfi:NM_007686:exon2:c.A317C:p.N106T"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999931	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	129917081	12A2p6	cell line	sgMsh2	129917081	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	96	0	0	NA	exonic	Mcub	nonsynonymous SNV	Mcub:NM_025779:exon6:c.T701C:p.L234S	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9961633	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	130529721	12A2p6	cell line	sgMsh2	130529721	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	290	0	0	NA	exonic	Col25a1	nonsynonymous SNV	"Col25a1:NM_198711:exon15:c.A899G:p.K300R,Col25a1:NM_001244952:exon16:c.A938G:p.K313R,Col25a1:NM_029838:exon16:c.A938G:p.K313R"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999989	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	131583214	12A2p6	cell line	sgMsh2	131583214	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	171	0	0	NA	exonic	Papss1	nonsynonymous SNV	"Papss1:NM_011863:exon4:c.G539A:p.G180E,Papss1:NM_001289477:exon5:c.G476A:p.G159E,Papss1:NM_001289478:exon5:c.G476A:p.G159E,Papss1:NM_001289479:exon6:c.G332A:p.G111E"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.867857688	1	0.9412397	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	132674053	12A2p6	cell line	sgMsh2	132674053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	219	0	0	NA	exonic	Aimp1	synonymous SNV	"Aimp1:NM_001368626:exon4:c.A300G:p.P100P,Aimp1:NM_007926:exon4:c.A327G:p.P109P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.6863059	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr3	132774443	12A2p6	cell line	sgMsh2	132774443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	142	0	0	NA	exonic	Tbck	synonymous SNV	Tbck:NM_001163455:exon23:c.A2082G:p.V694V	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994471	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr3	135523165	12A2p6	cell line	sgMsh2	135523165	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	195	0	0	NA	exonic	Manba	stopgain	Manba:NM_027288:exon6:c.A847T:p.K283X	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	8.54E-09	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	135551279	12A2p6	cell line	sgMsh2	135551279	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	73	0	0	NA	exonic	Manba	nonsynonymous SNV	Manba:NM_027288:exon12:c.A1702G:p.K568E	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	136881492	12A2p6	cell line	sgMsh2	136881492	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	exonic	Ppp3ca	nonsynonymous SNV	"Ppp3ca:NM_001293622:exon6:c.A734C:p.Q245P,Ppp3ca:NM_008913:exon6:c.A734C:p.Q245P"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.9734644	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	138454720	12A2p6	cell line	sgMsh2	138454720	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	167	0	0	NA	exonic	Adh5	nonsynonymous SNV	"Adh5:NM_001288578:exon8:c.A648T:p.K216N,Adh5:NM_007410:exon8:c.A1014T:p.K338N"	3qG3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998073	AAA	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr3	142630640	12A2p6	cell line	sgMsh2	142630640	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	143	0	0	NA	exonic	Gbp2	synonymous SNV	Gbp2:NM_010260:exon6:c.T750G:p.T250T	3qH1	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994699	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr3	144759179	12A2p6	cell line	sgMsh2	144759179	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	374	0	0	NA	exonic	Clca3a1	nonsynonymous SNV	Clca3a1:NM_009899:exon2:c.T292C:p.Y98H	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.9237196	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	144915474	12A2p6	cell line	sgMsh2	144915474	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	403	0	0	NA	exonic	Clca4b	nonsynonymous SNV	Clca4b:NM_001033199:exon11:c.T1838C:p.M613T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-08	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	144957342	12A2p6	cell line	sgMsh2	144957342	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	391	0	0	NA	exonic	Clca4a	nonsynonymous SNV	Clca4a:NM_207208:exon11:c.T1745C:p.I582T	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	1.62E-08	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	145508859	12A2p6	cell line	sgMsh2	145508859	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	92	0	0	NA	exonic	Col24a1	synonymous SNV	"Col24a1:NM_001317733:exon50:c.T1701G:p.G567G,Col24a1:NM_027770:exon50:c.T4245G:p.G1415G"	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr3	146584619	12A2p6	cell line	sgMsh2	146584619	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	119	0	0	NA	exonic	Dnase2b	nonsynonymous SNV	Dnase2b:NM_019957:exon6:c.T596G:p.L199R	3qH2	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9985424	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	151492368	12A2p6	cell line	sgMsh2	151492368	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	279	0	0	NA	exonic	Adgrl4	synonymous SNV	Adgrl4:NM_133222:exon3:c.T264G:p.G88G	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999983	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr3	152448842	12A2p6	cell line	sgMsh2	152448842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	160	0	0	NA	exonic	Zzz3	nonsynonymous SNV	"Zzz3:NM_001346655:exon5:c.T226C:p.Y76H,Zzz3:NM_001355673:exon5:c.T1729C:p.Y577H,Zzz3:NM_001080755:exon6:c.T1729C:p.Y577H,Zzz3:NM_001287139:exon6:c.T1729C:p.Y577H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997412	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	153205566	12A2p6	cell line	sgMsh2	153205566	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	93	0	0	NA	exonic	St6galnac3	nonsynonymous SNV	St6galnac3:NM_011372:exon5:c.T757C:p.Y253H	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	153910760	12A2p6	cell line	sgMsh2	153910760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	187	0	0	NA	exonic	Rabggtb	synonymous SNV	"Rabggtb:NM_001163479:exon1:c.T120C:p.H40H,Rabggtb:NM_011231:exon2:c.T264C:p.H88H,Rabggtb:NM_001163478:exon3:c.T240C:p.H80H"	3qH3	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999171	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr3	154621545	12A2p6	cell line	sgMsh2	154621545	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	494	0	0	NA	exonic	Cryz	nonsynonymous SNV	"Cryz:NM_001357672:exon7:c.T695C:p.L232P,Cryz:NM_001357673:exon7:c.T695C:p.L232P,Cryz:NM_001357674:exon7:c.T695C:p.L232P,Cryz:NM_001357675:exon7:c.T695C:p.L232P,Cryz:NM_001357676:exon7:c.T695C:p.L232P,Cryz:NM_009968:exon7:c.T695C:p.L232P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	1.20E-09	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	154748496	12A2p6	cell line	sgMsh2	154748496	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	151	0	0	NA	exonic	Erich3	nonsynonymous SNV	Erich3:NM_175176:exon7:c.T1307A:p.I436N	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996217	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	154938814	12A2p6	cell line	sgMsh2	154938814	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	118	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon17:c.T1706G:p.V569G	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.791016122	2	0.5013332	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	155087320	12A2p6	cell line	sgMsh2	155087320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	208	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon4:c.T1069C:p.Y357H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.985380084	1	0.9999239	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	155091427	12A2p6	cell line	sgMsh2	155091427	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	112	0	0	NA	exonic	Fpgt	nonsynonymous SNV	Fpgt:NM_029330:exon2:c.T190C:p.Y64H	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9886847	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	157312902	12A2p6	cell line	sgMsh2	157312902	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	139	0	0	NA	exonic	Negr1	nonsynonymous SNV	Negr1:NM_001039094:exon7:c.C1039T:p.L347F	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993725	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr3	157994631	12A2p6	cell line	sgMsh2	157994631	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	221	0	0	NA	exonic	Ankrd13c	nonsynonymous SNV	"Ankrd13c:NM_001359909:exon8:c.T281C:p.L94P,Ankrd13c:NM_001013806:exon9:c.T1088C:p.L363P"	3qH4	chr3-10012637-159913826	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8900557	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	3560546	12A2p6	cell line	sgMsh2	3560546	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	245	0	0	NA	exonic	Tmem68	nonsynonymous SNV	Tmem68:NM_028097:exon5:c.T637C:p.W213R	4qA1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999928	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	3871083	12A2p6	cell line	sgMsh2	3871083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	34	0	0	NA	exonic	Mos	synonymous SNV	Mos:NM_020021:exon1:c.T732A:p.A244A	4qA1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9499093	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	9542278	12A2p6	cell line	sgMsh2	9542278	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	92	0	0	NA	exonic	Asph	nonsynonymous SNV	"Asph:NM_001177849:exon13:c.T910C:p.F304L,Asph:NM_001290367:exon13:c.T709C:p.F237L,Asph:NM_023066:exon14:c.T958C:p.F320L"	4qA1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.9554529	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	11513123	12A2p6	cell line	sgMsh2	11513123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	275	0	0	NA	exonic	Virma	nonsynonymous SNV	"Virma:NM_001081183:exon8:c.A976G:p.T326A,Virma:NM_001347055:exon8:c.A976G:p.T326A"	4qA1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.999998	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	14621237	12A2p6	cell line	sgMsh2	14621237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	125	0	0	NA	exonic	Slc26a7	nonsynonymous SNV	Slc26a7:NM_145947:exon2:c.G148A:p.D50N	4qA1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.998868	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	18110570	12A2p6	cell line	sgMsh2	18110570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	224	0	0	NA	exonic	Mmp16	synonymous SNV	"Mmp16:NM_019724:exon8:c.A1365G:p.K455K,Mmp16:NM_001379518:exon9:c.A1365G:p.K455K,Mmp16:NM_001379519:exon9:c.A1365G:p.K455K"	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999826	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	18860570	12A2p6	cell line	sgMsh2	18860570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	120	0	0	NA	exonic	Cnbd1	nonsynonymous SNV	Cnbd1:NM_001371269:exon10:c.T1175C:p.L392P	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	2	1	1	0.9986025	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	19623125	12A2p6	cell line	sgMsh2	19623125	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	67	0	0	NA	exonic	Wwp1	nonsynonymous SNV	"Wwp1:NM_001276292:exon20:c.T1966C:p.Y656H,Wwp1:NM_001355222:exon21:c.T2155C:p.Y719H,Wwp1:NM_177327:exon21:c.T2359C:p.Y787H"	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.958259531	1	0.9733931	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	19627973	12A2p6	cell line	sgMsh2	19627973	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	39	0	0	NA	exonic	Wwp1	synonymous SNV	"Wwp1:NM_001276292:exon18:c.T1626G:p.G542G,Wwp1:NM_001355222:exon19:c.T1815G:p.G605G,Wwp1:NM_177327:exon19:c.T2019G:p.G673G"	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9590719	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr4	20064005	12A2p6	cell line	sgMsh2	20064005	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	144	0	0	NA	exonic	Ggh	nonsynonymous SNV	Ggh:NM_010281:exon8:c.A701C:p.K234T	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994918	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	21781757	12A2p6	cell line	sgMsh2	21781757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	235	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon3:c.T122C:p.V41A,Usp45:NM_152825:exon3:c.T122C:p.V41A"	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999891	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	24580115	12A2p6	cell line	sgMsh2	24580115	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	198	0	0	NA	exonic	Mms22l	nonsynonymous SNV	Mms22l:NM_199467:exon16:c.T2443C:p.S815P	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999479	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	25256093	12A2p6	cell line	sgMsh2	25256093	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	94	0	0	NA	exonic	Ufl1	synonymous SNV	"Ufl1:NM_001355512:exon13:c.A1425G:p.T475T,Ufl1:NM_026194:exon13:c.A1425G:p.T475T"	4qA3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9958269	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr4	32712071	12A2p6	cell line	sgMsh2	32712071	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	61	0	0	NA	exonic	Mdn1	frameshift deletion	Mdn1:NM_001081392:exon38:c.5588delA:p.N1864Ifs*29	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
M8_p20	chr4	32735428	12A2p6	cell line	sgMsh2	32735428	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	135	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon63:c.G10093T:p.A3365S	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.863337596	1	0.9126914	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	32773266	12A2p6	cell line	sgMsh2	32773266	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	75	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon101:c.C16424T:p.A5475V	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9907462	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	32815241	12A2p6	cell line	sgMsh2	32815241	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	130	0	0	NA	exonic	Ankrd6	synonymous SNV	"Ankrd6:NM_001012451:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_001355587:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_080471:exon13:c.G1362A:p.Q454Q,Ankrd6:NM_001012450:exon14:c.G1362A:p.Q454Q"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.971819807	1	0.9975979	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	33223648	12A2p6	cell line	sgMsh2	33223648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	106	0	0	NA	exonic	Srsf12	nonsynonymous SNV	"Srsf12:NM_001356473:exon2:c.G146A:p.R49H,Srsf12:NM_001372518:exon2:c.G146A:p.R49H"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9974804	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	33944633	12A2p6	cell line	sgMsh2	33944633	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	215	0	0	NA	exonic	Cnr1	synonymous SNV	"Cnr1:NM_001355020:exon2:c.T1020C:p.I340I,Cnr1:NM_001365881:exon2:c.T1020C:p.I340I,Cnr1:NM_007726:exon2:c.T1020C:p.I340I,Cnr1:NM_001355021:exon6:c.T1020C:p.I340I"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999746	TTA	synonymous	NA	NA	NA	NA
M8_p20	chr4	34028437	12A2p6	cell line	sgMsh2	34028437	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	160	0	0	NA	exonic	Spaca1	synonymous SNV	Spaca1:NM_026293:exon7:c.T879C:p.P293P	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997412	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	34570964	12A2p6	cell line	sgMsh2	34570964	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	91	0	0	NA	exonic	Orc3	synonymous SNV	"Orc3:NM_001159563:exon20:c.T2094C:p.P698P,Orc3:NM_015824:exon20:c.T2097C:p.P699P"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.732254925	2	0.7431955	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	34806129	12A2p6	cell line	sgMsh2	34806129	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	214	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A6929G:p.K2310R	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999735	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	34810647	12A2p6	cell line	sgMsh2	34810647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	176	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.A2411C:p.Y804S	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998682	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	34810857	12A2p6	cell line	sgMsh2	34810857	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	152	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2201G:p.V734G	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996373	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	35708322	12A2p6	cell line	sgMsh2	35708322	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	164	0	0	NA	exonic	Lingo2	nonsynonymous SNV	"Lingo2:NM_001166001:exon2:c.C1657A:p.L553M,Lingo2:NM_175516:exon3:c.C1657A:p.L553M,Lingo2:NM_001165999:exon8:c.C1657A:p.L553M,Lingo2:NM_001166000:exon9:c.C1657A:p.L553M"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	1	0.9980444	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	41035165	12A2p6	cell line	sgMsh2	41035165	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	86	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon5:c.C450T:p.Y150Y,Aqp7:NM_001378640:exon5:c.C360T:p.Y120Y,Aqp7:NM_001378642:exon5:c.C360T:p.Y120Y,Aqp7:NM_001378638:exon6:c.C450T:p.Y150Y,Aqp7:NM_001378641:exon6:c.C360T:p.Y120Y,Aqp7:NM_007473:exon6:c.C450T:p.Y150Y"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.885938057	1	0.9278925	TGT	synonymous	NA	NA	NA	NA
M8_p20	chr4	41045295	12A2p6	cell line	sgMsh2	41045295	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	207	0	0	NA	exonic	Aqp7	synonymous SNV	"Aqp7:NM_001378639:exon2:c.T84C:p.S28S,Aqp7:NM_001378638:exon3:c.T84C:p.S28S,Aqp7:NM_007473:exon3:c.T84C:p.S28S"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.781975938	2	0.8376362	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr4	41093679	12A2p6	cell line	sgMsh2	41093679	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.291	32	0	0	NA	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon6:c.T734C:p.V245A	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	9.90E-05	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	41480383	12A2p6	cell line	sgMsh2	41480383	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	89	0	0	NA	exonic	Nudt2	frameshift deletion	Nudt2:NM_025539:exon3:c.265delA:p.T90Rfs*8	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8_p20	chr4	41658870	12A2p6	cell line	sgMsh2	41658870	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	46	0	0	NA	exonic	Cntfr	nonsynonymous SNV	"Cntfr:NM_001136056:exon8:c.T860G:p.I287S,Cntfr:NM_001379211:exon8:c.T860G:p.I287S,Cntfr:NM_001379212:exon8:c.T860G:p.I287S,Cntfr:NM_001379213:exon8:c.T860G:p.I287S,Cntfr:NM_001379214:exon8:c.T860G:p.I287S,Cntfr:NM_001379215:exon8:c.T860G:p.I287S,Cntfr:NM_001379216:exon8:c.T860G:p.I287S,Cntfr:NM_016673:exon8:c.T860G:p.I287S"	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.969227	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	43660748	12A2p6	cell line	sgMsh2	43660748	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	105	0	0	NA	exonic	Fam221b	nonsynonymous SNV	Fam221b:NM_175517:exon4:c.A1004G:p.Y335C	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.994420268	1	0.9969352	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	43680743	12A2p6	cell line	sgMsh2	43680743	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	152	0	0	NA	exonic	Tmem8b	nonsynonymous SNV	Tmem8b:NM_001368840:exon4:c.C1012T:p.R338C	4qA5	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996373	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	45044856	12A2p6	cell line	sgMsh2	45044856	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	66	0	0	NA	exonic	Fbxo10	nonsynonymous SNV	"Fbxo10:NM_001024142:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378819:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378820:exon7:c.G1217A:p.R406H,Fbxo10:NM_001378821:exon7:c.G1778A:p.R593H,Fbxo10:NM_001378822:exon7:c.G1838A:p.R613H,Fbxo10:NM_001378823:exon7:c.G1217A:p.R406H"	4qB1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9865305	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	45307923	12A2p6	cell line	sgMsh2	45307923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.21	347	0	0	NA	exonic	Trmt10b	frameshift deletion	Trmt10b:NM_027266:exon6:c.608delT:p.P205Lfs*7	4qB1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr4	53083890	12A2p6	cell line	sgMsh2	53083890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	73	0	0	NA	exonic	Abca1	nonsynonymous SNV	Abca1:NM_013454:exon15:c.T1942C:p.W648R	4qB2	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9899398	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	55020199	12A2p6	cell line	sgMsh2	55020199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	149	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon6:c.C6194T:p.A2065V	4qB2	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.885938057	1	0.9651218	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	57855968	12A2p6	cell line	sgMsh2	57855968	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	41	0	0	NA	exonic	Pakap	synonymous SNV	"Pakap:NM_001035533:exon1:c.T1296G:p.T432T,Pakap:NM_001035532:exon2:c.T1296G:p.T432T,Pakap:NM_009649:exon2:c.T1296G:p.T432T,Pakap:NM_001304544:exon7:c.T1884G:p.T628T,Pakap:NM_001384150:exon8:c.T1884G:p.T628T,Pakap:NM_001384157:exon8:c.T1890G:p.T630T"	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9622644	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr4	58000255	12A2p6	cell line	sgMsh2	58000255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	281	0	0	NA	exonic	Txndc8	nonsynonymous SNV	Txndc8:NM_026132:exon4:c.A245G:p.Y82C	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999984	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	59082446	12A2p6	cell line	sgMsh2	59082446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	149	0	0	NA	exonic	Shoc1	nonsynonymous SNV	Shoc1:NM_001370843:exon12:c.T1181C:p.M394T	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995884	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	63121350	12A2p6	cell line	sgMsh2	63121350	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	54	0	0	NA	exonic	Zfp618	synonymous SNV	"Zfp618:NM_001369113:exon12:c.C1086T:p.A362A,Zfp618:NM_001369114:exon12:c.C1089T:p.A363A,Zfp618:NM_001369119:exon12:c.C921T:p.A307A,Zfp618:NM_001369115:exon13:c.C1017T:p.A339A,Zfp618:NM_001369117:exon13:c.C918T:p.A306A,Zfp618:NM_001369118:exon13:c.C921T:p.A307A,Zfp618:NM_028326:exon13:c.C906T:p.A302A,Zfp618:NM_028327:exon13:c.C1185T:p.A395A,Zfp618:NM_001369116:exon14:c.C1014T:p.A338A"	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9778495	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	63346373	12A2p6	cell line	sgMsh2	63346373	C	T	SNV	Mutect2;Vardict	2	0.064	254	0	0	NA	exonic	Orm1	synonymous SNV	Orm1:NM_008768:exon5:c.C531T:p.V177V	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.289285896	3	1.21E-09	TCG	synonymous	NA	NA	NA	NA
M8_p20	chr4	63362563	12A2p6	cell line	sgMsh2	63362563	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	169	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon1:c.T77G:p.I26S	4qB3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998229	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	65156040	12A2p6	cell line	sgMsh2	65156040	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	86	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon2:c.C830A:p.P277H	4qC1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9941616	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	65613577	12A2p6	cell line	sgMsh2	65613577	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	29	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.T370C:p.C124R,Trim32:NM_053084:exon2:c.T370C:p.C124R"	4qC1	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9387841	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	70289913	12A2p6	cell line	sgMsh2	70289913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	92	0	0	NA	exonic	Cdk5rap2	synonymous SNV	"Cdk5rap2:NM_001313762:exon17:c.A1476G:p.L492L,Cdk5rap2:NM_145990:exon20:c.A2295G:p.L765L"	4qC2	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9954612	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr4	76059690	12A2p6	cell line	sgMsh2	76059690	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	193	0	0	NA	exonic	Ptprd	nonsynonymous SNV	"Ptprd:NM_001368992:exon16:c.T2615C:p.I872T,Ptprd:NM_001368993:exon16:c.T2612C:p.I871T,Ptprd:NM_001352628:exon17:c.T2624C:p.I875T,Ptprd:NM_001352629:exon17:c.T2627C:p.I876T,Ptprd:NM_001352630:exon17:c.T2624C:p.I875T,Ptprd:NM_001368991:exon27:c.T2639C:p.I880T,Ptprd:NM_011211:exon27:c.T2642C:p.I881T"	4qC3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.922098794	1	0.9966405	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	81385176	12A2p6	cell line	sgMsh2	81385176	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	126	0	0	NA	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305284:exon5:c.G524A:p.S175N,Mpdz:NM_001305286:exon5:c.G524A:p.S175N,Mpdz:NM_010820:exon5:c.G524A:p.S175N"	4qC3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9989147	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	83417779	12A2p6	cell line	sgMsh2	83417779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	15	0	0	NA	exonic	Snapc3	synonymous SNV	"Snapc3:NM_001358795:exon1:c.T27G:p.G9G,Snapc3:NM_029949:exon1:c.T27G:p.G9G"	4qC3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.8929987	GTG	synonymous	GGC	8	GGCGGCGG	NA
M8_p20	chr4	83751880	12A2p6	cell line	sgMsh2	83751880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	250	0	0	NA	exonic	Ccdc171	nonsynonymous SNV	"Ccdc171:NM_001355549:exon22:c.T1673C:p.M558T,Ccdc171:NM_001355378:exon23:c.T3470C:p.M1157T"	4qC3	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999942	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	85100724	12A2p6	cell line	sgMsh2	85100724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	21	0	0	NA	exonic	Cntln	nonsynonymous SNV	Cntln:NM_175275:exon23:c.T3650C:p.M1217T	4qC4	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	2	1	1	0.9158085	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	86786079	12A2p6	cell line	sgMsh2	86786079	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	68	0	0	NA	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon6:c.C830A:p.P277H	4qC4	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.9876068	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	86821390	12A2p6	cell line	sgMsh2	86821390	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Dennd4c	nonsynonymous SNV	Dennd4c:NM_184088:exon21:c.C2915A:p.P972H	4qC4	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	0.949219347	1	0.9846402	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	89688329	12A2p6	cell line	sgMsh2	89688329	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	17	0	0	NA	exonic	Dmrta1	synonymous SNV	Dmrta1:NM_175647:exon1:c.T21C:p.G7G	4qC4	chr4-3184971-97720548	3	2	1	0.9	4.068082914	NA	1	1	1	0.09722284	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr4	98520916	12A2p6	cell line	sgMsh2	98520916	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	69	0	0	NA	exonic	Patj	nonsynonymous SNV	"Patj:NM_001355177:exon21:c.T839C:p.L280P,Patj:NM_172696:exon24:c.T3395C:p.L1132P"	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.980859991	1	0.9832523	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	98930943	12A2p6	cell line	sgMsh2	98930943	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	25	0	0	NA	exonic	Usp1	nonsynonymous SNV	"Usp1:NM_001356424:exon5:c.C479T:p.T160I,Usp1:NM_001301414:exon6:c.C641T:p.T214I,Usp1:NM_146144:exon6:c.C641T:p.T214I"	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9281943	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	98934163	12A2p6	cell line	sgMsh2	98934163	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	203	0	0	NA	exonic	Usp1	synonymous SNV	"Usp1:NM_001356424:exon8:c.G1551A:p.T517T,Usp1:NM_001301414:exon9:c.G1713A:p.T571T,Usp1:NM_146144:exon9:c.G1713A:p.T571T"	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999578	CGA	synonymous	NA	NA	NA	NA
M8_p20	chr4	100974060	12A2p6	cell line	sgMsh2	100974060	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	95	0	0	NA	exonic	Cachd1	nonsynonymous SNV	Cachd1:NM_198037:exon14:c.T2048C:p.L683P	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9959986	CTC	nonsynonymous	CAGC	11	CAGCCAGCCAG	NA
M8_p20	chr4	103353624	12A2p6	cell line	sgMsh2	103353624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	157	0	0	NA	exonic	Oma1	synonymous SNV	Oma1:NM_025909:exon8:c.T1326C:p.A442A	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.949219347	1	0.9976084	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr4	104679526	12A2p6	cell line	sgMsh2	104679526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.239	80	0	0	NA	exonic	Dab1	frameshift deletion	"Dab1:NM_010014:exon6:c.512delA:p.K173Rfs*27,Dab1:NM_177259:exon6:c.512delA:p.K173Rfs*67,Dab1:NM_001369046:exon8:c.512delA:p.K173Rfs*67,Dab1:NM_001369048:exon8:c.512delA:p.K173Rfs*57,Dab1:NM_001369047:exon9:c.512delA:p.K173Rfs*67,Dab1:NM_001369049:exon9:c.512delA:p.K173Rfs*67"	4qC6	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
M8_p20	chr4	106420993	12A2p6	cell line	sgMsh2	106420993	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	207	0	0	NA	exonic	Usp24	nonsynonymous SNV	Usp24:NM_183225:exon58:c.A6908G:p.H2303R	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999643	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	108266094	12A2p6	cell line	sgMsh2	108266094	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	118	0	0	NA	exonic	Zyg11b	synonymous SNV	Zyg11b:NM_001033634:exon3:c.T675C:p.T225T	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984797	TAG	synonymous	GTA	8	GTAGTAGT	NA
M8_p20	chr4	108523281	12A2p6	cell line	sgMsh2	108523281	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	311	0	0	NA	exonic	Tut4	nonsynonymous SNV	"Tut4:NM_001379663:exon16:c.A3094G:p.T1032A,Tut4:NM_001379664:exon16:c.A3094G:p.T1032A,Tut4:NM_001379665:exon16:c.A3094G:p.T1032A,Tut4:NM_175472:exon17:c.A3094G:p.T1032A"	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.994420268	1	0.9999993	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	108604075	12A2p6	cell line	sgMsh2	108604075	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	220	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon11:c.A1631G:p.Y544C	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999794	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	109065898	12A2p6	cell line	sgMsh2	109065898	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	198	0	0	NA	exonic	Osbpl9	nonsynonymous SNV	"Osbpl9:NM_001134791:exon15:c.A1325G:p.H442R,Osbpl9:NM_001355191:exon16:c.A1121G:p.H374R,Osbpl9:NM_173350:exon16:c.A1364G:p.H455R,Osbpl9:NM_001355190:exon17:c.A1121G:p.H374R,Osbpl9:NM_133885:exon18:c.A1616G:p.H539R,Osbpl9:NM_001346502:exon19:c.A1685G:p.H562R,Osbpl9:NM_001368727:exon19:c.A1655G:p.H552R"	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999479	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	109305685	12A2p6	cell line	sgMsh2	109305685	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	115	0	0	NA	exonic	Eps15	nonsynonymous SNV	Eps15:NM_007943:exon4:c.T174G:p.D58E	4qC7	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.998275	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	112624136	12A2p6	cell line	sgMsh2	112624136	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	157	0	0	NA	exonic	Skint2	synonymous SNV	"Skint2:NM_001285963:exon3:c.C195A:p.R65R,Skint2:NM_001285965:exon3:c.C195A:p.R65R"	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997063	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	115041182	12A2p6	cell line	sgMsh2	115041182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	102	0	0	NA	exonic	Stil	nonsynonymous SNV	"Stil:NM_001304551:exon16:c.C2330T:p.A777V,Stil:NM_001304559:exon16:c.C2072T:p.A691V,Stil:NM_001304555:exon17:c.C3005T:p.A1002V,Stil:NM_009185:exon17:c.C3008T:p.A1003V,Stil:NM_001304553:exon18:c.C1697T:p.A566V"	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.890458149	1	0.9463741	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	115068554	12A2p6	cell line	sgMsh2	115068554	C	-	Deletion	Strelka2;Vardict	2	0.1765	34	0	0	NA	exonic	Tal1	frameshift deletion	"Tal1:NM_001287388:exon5:c.819delC:p.P275Lfs*81,Tal1:NM_011527:exon5:c.819delC:p.P275Lfs*81"	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.79779626	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8_p20	chr4	116100560	12A2p6	cell line	sgMsh2	116100560	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	263	0	0	NA	exonic	Rad54l	nonsynonymous SNV	"Rad54l:NM_009015:exon11:c.T1223A:p.I408N,Rad54l:NM_001122958:exon12:c.T1223A:p.I408N,Rad54l:NM_001122959:exon12:c.T1223A:p.I408N"	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.953739439	1	0.9999173	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	116153567	12A2p6	cell line	sgMsh2	116153567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	25	0	0	NA	exonic	Pomgnt1	nonsynonymous SNV	"Pomgnt1:NM_001290658:exon6:c.A485G:p.H162R,Pomgnt1:NM_026651:exon7:c.A551G:p.H184R,Pomgnt1:NM_029786:exon7:c.A551G:p.H184R"	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9281943	CAC	nonsynonymous	TTCC	8	TTCCTTCC	NA
M8_p20	chr4	116610869	12A2p6	cell line	sgMsh2	116610869	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	183	0	0	NA	exonic	Nasp	synonymous SNV	Nasp:NM_016777:exon7:c.T918C:p.D306D	4qD1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999019	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr4	117964373	12A2p6	cell line	sgMsh2	117964373	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	115	0	0	NA	exonic	St3gal3	synonymous SNV	"St3gal3:NM_001285521:exon5:c.T303C:p.A101A,St3gal3:NM_001161774:exon6:c.T351C:p.A117A,St3gal3:NM_001285520:exon6:c.T351C:p.A117A,St3gal3:NM_009176:exon6:c.T351C:p.A117A"	4qD2.1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.998275	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	118437024	12A2p6	cell line	sgMsh2	118437024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	29	0	0	NA	exonic	Cdc20	nonsynonymous SNV	Cdc20:NM_023223:exon1:c.A98G:p.K33R	4qD2.1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9387841	CTT	nonsynonymous	CTTTG	11	CTTTGCTTTGC	NA
M8_p20	chr4	118967135	12A2p6	cell line	sgMsh2	118967135	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	141	0	0	NA	exonic	Lao1	nonsynonymous SNV	Lao1:NM_133892:exon5:c.T602C:p.L201P	4qD2.1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994233	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	119258896	12A2p6	cell line	sgMsh2	119258896	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	33	0	0	NA	exonic	Cldn19	nonsynonymous SNV	"Cldn19:NM_001038590:exon4:c.G562C:p.E188Q,Cldn19:NM_153105:exon4:c.G562C:p.E188Q"	4qD2.1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9478531	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	120886945	12A2p6	cell line	sgMsh2	120886945	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	84	0	0	NA	exonic	Rims3	nonsynonymous SNV	Rims3:NM_182929:exon5:c.C371T:p.P124L	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.9493254	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	121149028	12A2p6	cell line	sgMsh2	121149028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	290	0	0	NA	exonic	Rlf	synonymous SNV	Rlf:NM_001346660:exon8:c.A3084G:p.K1028K	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999989	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr4	123382177	12A2p6	cell line	sgMsh2	123382177	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	225	0	0	NA	exonic	Macf1	synonymous SNV	"Macf1:NM_001199137:exon70:c.T12516C:p.T4172T,Macf1:NM_001199136:exon75:c.T18597C:p.T6199T"	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.87237778	1	0.968952	CAG	synonymous	GT	8	GTGTGTGT	NA
M8_p20	chr4	123471118	12A2p6	cell line	sgMsh2	123471118	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	122	0	0	NA	exonic	Macf1	nonsynonymous SNV	Macf1:NM_001199136:exon36:c.A9849G:p.I3283M	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9987155	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	124732199	12A2p6	cell line	sgMsh2	124732199	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	93	0	0	NA	exonic	Sf3a3	nonsynonymous SNV	Sf3a3:NM_029157:exon17:c.A1440C:p.E480D	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9956479	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	124942369	12A2p6	cell line	sgMsh2	124942369	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	109	0	0	NA	exonic	9930104L06Rik	nonsynonymous SNV	"9930104L06Rik:NM_177573:exon4:c.T472C:p.Y158H,9930104L06Rik:NM_001355603:exon5:c.T472C:p.Y158H,9930104L06Rik:NM_001355605:exon5:c.T472C:p.Y158H"	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9977792	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	125056589	12A2p6	cell line	sgMsh2	125056589	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	211	0	0	NA	exonic	Dnali1	stoploss	Dnali1:NM_175223:exon6:c.A777C:p.X259C	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999699	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	125059124	12A2p6	cell line	sgMsh2	125059124	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	73	0	0	NA	exonic	Dnali1	nonsynonymous SNV	Dnali1:NM_175223:exon5:c.A605G:p.D202G	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9899398	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	125623534	12A2p6	cell line	sgMsh2	125623534	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	146	0	0	NA	exonic	Grik3	stopgain	Grik3:NM_001081097:exon2:c.G169T:p.E57X	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995329	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	126055071	12A2p6	cell line	sgMsh2	126055071	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	59	0	0	NA	exonic	Mrps15	synonymous SNV	Mrps15:NM_025544:exon7:c.A558C:p.L186L	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.781975938	1	0.000993785	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr4	128414294	12A2p6	cell line	sgMsh2	128414294	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	114	0	0	NA	exonic	Csmd2	nonsynonymous SNV	Csmd2:NM_001281955:exon24:c.A3844G:p.S1282G	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9982008	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	128513468	12A2p6	cell line	sgMsh2	128513468	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	87	0	0	NA	exonic	Csmd2	synonymous SNV	Csmd2:NM_001281955:exon48:c.C7345T:p.L2449L	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9944015	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	128932435	12A2p6	cell line	sgMsh2	128932435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	37	0	0	NA	exonic	Azin2	nonsynonymous SNV	Azin2:NM_172875:exon11:c.T1298C:p.V433A	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.8940229	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	128948900	12A2p6	cell line	sgMsh2	128948900	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	73	0	0	NA	exonic	Azin2	synonymous SNV	"Azin2:NM_001301841:exon5:c.T360C:p.D120D,Azin2:NM_172875:exon7:c.T645C:p.D215D"	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9899398	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr4	129432551	12A2p6	cell line	sgMsh2	129432551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	100	0	0	NA	exonic	Zbtb8b	nonsynonymous SNV	Zbtb8b:NM_153541:exon2:c.T721C:p.Y241H	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.996757	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	129616489	12A2p6	cell line	sgMsh2	129616489	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	52	0	0	NA	exonic	Iqcc	frameshift deletion	Iqcc:NM_198026:exon5:c.1232delA:p.N411Tfs*83	4qD2.2	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
M8_p20	chr4	132210821	12A2p6	cell line	sgMsh2	132210821	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	233	0	0	NA	exonic	Ythdf2	synonymous SNV	Ythdf2:NM_145393:exon3:c.T63C:p.G21G	4qD2.3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999881	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr4	132292628	12A2p6	cell line	sgMsh2	132292628	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	193	0	0	NA	exonic	Taf12	nonsynonymous SNV	Taf12:NM_025579:exon6:c.G452T:p.R151I	4qD2.3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.962779623	1	0.9995736	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	132459737	12A2p6	cell line	sgMsh2	132459737	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	193	0	0	NA	exonic	Med18	synonymous SNV	Med18:NM_026039:exon3:c.A450C:p.R150R	4qD2.3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999357	TTC	synonymous	NA	NA	NA	NA
M8_p20	chr4	133064219	12A2p6	cell line	sgMsh2	133064219	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	37	0	0	NA	exonic	Ahdc1	nonsynonymous SNV	Ahdc1:NM_146155:exon6:c.A2770T:p.S924C	4qD2.3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9556195	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	133586009	12A2p6	cell line	sgMsh2	133586009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	147	0	0	NA	exonic	Gpn2	synonymous SNV	"Gpn2:NM_001290742:exon2:c.T442C:p.L148L,Gpn2:NM_133884:exon2:c.T511C:p.L171L"	4qD2.3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995522	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr4	133982834	12A2p6	cell line	sgMsh2	133982834	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	153	0	0	NA	exonic	Dhdds	nonsynonymous SNV	"Dhdds:NM_001362959:exon7:c.G623A:p.G208E,Dhdds:NM_001362960:exon7:c.G623A:p.G208E,Dhdds:NM_001362962:exon7:c.G623A:p.G208E,Dhdds:NM_026144:exon7:c.G623A:p.G208E,Dhdds:NM_001362961:exon8:c.G311A:p.G104E"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.91305861	1	0.9885867	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	134507331	12A2p6	cell line	sgMsh2	134507331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	52	0	0	NA	exonic	Paqr7	synonymous SNV	"Paqr7:NM_027995:exon2:c.T498C:p.H166H,Paqr7:NM_001285845:exon3:c.T498C:p.H166H,Paqr7:NM_001285847:exon3:c.T498C:p.H166H,Paqr7:NM_001285849:exon3:c.T498C:p.H166H,Paqr7:NM_001285846:exon4:c.T498C:p.H166H"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.831696951	1	0.8017128	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr4	134885355	12A2p6	cell line	sgMsh2	134885355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	58	0	0	NA	exonic	Rhd	nonsynonymous SNV	Rhd:NM_011270:exon6:c.T916G:p.L306V	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.772935754	1	0.618993	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	136554214	12A2p6	cell line	sgMsh2	136554214	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	110	0	0	NA	exonic	Kdm1a	nonsynonymous SNV	"Kdm1a:NM_133872:exon15:c.A1985T:p.K662M,Kdm1a:NM_001347221:exon16:c.A2045T:p.K682M,Kdm1a:NM_001356567:exon16:c.A1997T:p.K666M"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9978708	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	136946015	12A2p6	cell line	sgMsh2	136946015	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	74	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon3:c.T457C:p.F153L	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9903514	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	137531694	12A2p6	cell line	sgMsh2	137531694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	119	0	0	NA	exonic	Hspg2	nonsynonymous SNV	Hspg2:NM_008305:exon37:c.A4697G:p.N1566S	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9985424	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	137650397	12A2p6	cell line	sgMsh2	137650397	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	152	0	0	NA	exonic	Usp48	synonymous SNV	"Usp48:NM_001347227:exon24:c.T2991C:p.P997P,Usp48:NM_001355588:exon24:c.T2985C:p.P995P,Usp48:NM_130879:exon25:c.T3039C:p.P1013P"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.791016122	2	0.6087098	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr4	138320956	12A2p6	cell line	sgMsh2	138320956	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	46	0	0	NA	exonic	Pink1	nonsynonymous SNV	Pink1:NM_026880:exon2:c.C454T:p.R152C	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.949219347	1	0.9445147	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	138967464	12A2p6	cell line	sgMsh2	138967464	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.32	45	0	0	NA	exonic	Rnf186	frameshift deletion	Rnf186:NM_025786:exon1:c.152delC:p.K53Sfs*12	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8_p20	chr4	139371766	12A2p6	cell line	sgMsh2	139371766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	31	0	0	NA	exonic	Emc1	synonymous SNV	"Emc1:NM_001039200:exon20:c.T2550C:p.A850A,Emc1:NM_146157:exon21:c.T2559C:p.A853A"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.943494	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr4	139640665	12A2p6	cell line	sgMsh2	139640665	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.159	37	0	0	NA	exonic	Aldh4a1	nonsynonymous SNV	Aldh4a1:NM_175438:exon9:c.A916G:p.T306A	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.718694648	1	0.5747862	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	139655347	12A2p6	cell line	sgMsh2	139655347	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	78	0	0	NA	exonic	Tas1r2	nonsynonymous SNV	Tas1r2:NM_031873:exon2:c.T295C:p.Y99H	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.845257228	1	0.8350677	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	141323437	12A2p6	cell line	sgMsh2	141323437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.389	46	0	0	NA	exonic	Epha2	nonsynonymous SNV	Epha2:NM_010139:exon15:c.T2503C:p.F835L	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.969227	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	141388176	12A2p6	cell line	sgMsh2	141388176	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	27	0	0	NA	exonic	Clcnka	nonsynonymous SNV	"Clcnka:NM_001146307:exon15:c.A1714C:p.T572P,Clcnka:NM_024412:exon16:c.A1714C:p.T572P"	4qD3	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9336948	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	143792853	12A2p6	cell line	sgMsh2	143792853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	144	0	0	NA	exonic	Pramel25	synonymous SNV	"Pramel25:NM_001007077:exon2:c.C183A:p.A61A,Pramel25:NM_001347246:exon2:c.C183A:p.A61A"	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994918	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	143991541	12A2p6	cell line	sgMsh2	143991541	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	423	0	0	NA	exonic	Pramel14	nonsynonymous SNV	Pramel14:NM_001085540:exon3:c.G1331A:p.R444Q	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.668973635	2	0.9999998	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	144157905	12A2p6	cell line	sgMsh2	144157905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	176	0	0	NA	exonic	Oog3	nonsynonymous SNV	Oog3:NM_201258:exon4:c.A1460G:p.D487G	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998682	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	144373053	12A2p6	cell line	sgMsh2	144373053	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	206	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon3:c.T1141A:p.F381I	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.99894036	1	0.9999606	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	144377206	12A2p6	cell line	sgMsh2	144377206	C	T	SNV	Mutect2;Vardict	2	0.114	52	0	0	NA	exonic	Pramel15	nonsynonymous SNV	Pramel15:NM_001115077:exon2:c.G349A:p.V117M	4qE1	chr4-97782511-145315362	3	2	1	0.9	4.068082914	NA	1	0.515290502	2	0.652292	ACA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	148675266	12A2p6	cell line	sgMsh2	148675266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	38	0	0	NA	exonic	Gm572	nonsynonymous SNV	Gm572:NM_001368835:exon12:c.T1331C:p.M444T	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9573794	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	152020845	12A2p6	cell line	sgMsh2	152020845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	64	0	0	NA	exonic	Zbtb48	nonsynonymous SNV	"Zbtb48:NM_001379628:exon8:c.C1429A:p.L477M,Zbtb48:NM_133879:exon8:c.C1429A:p.L477M"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	0.940179162	1	0.9608847	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	152052640	12A2p6	cell line	sgMsh2	152052640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	188	0	0	NA	exonic	Nol9	synonymous SNV	"Nol9:NM_001159599:exon9:c.C1629T:p.G543G,Nol9:NM_001378856:exon9:c.C1632T:p.G544G,Nol9:NM_028727:exon9:c.C1629T:p.G543G"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999205	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr4	154667400	12A2p6	cell line	sgMsh2	154667400	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	44	0	0	NA	exonic	Actrt2	nonsynonymous SNV	Actrt2:NM_028513:exon1:c.T278C:p.L93P	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	0.989900176	1	0.962614	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	155069021	12A2p6	cell line	sgMsh2	155069021	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.369	105	0	0	NA	exonic	Pex10	nonsynonymous SNV	Pex10:NM_001042407:exon3:c.T546G:p.I182M	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9973721	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	155268251	12A2p6	cell line	sgMsh2	155268251	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	171	0	0	NA	exonic	Prkcz	nonsynonymous SNV	"Prkcz:NM_001039079:exon12:c.A869C:p.K290T,Prkcz:NM_001355178:exon12:c.A1094C:p.K365T,Prkcz:NM_008860:exon15:c.A1418C:p.K473T"	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998372	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	155823508	12A2p6	cell line	sgMsh2	155823508	A	G	SNV	Mutect2;Vardict	2	0.148	38	0	0	NA	exonic	Ccnl2	synonymous SNV	Ccnl2:NM_207678:exon11:c.A1368G:p.P456P	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	0.668973635	2	0.5343417	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr4	155887960	12A2p6	cell line	sgMsh2	155887960	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.128	109	0	0	NA	exonic	Ints11	nonsynonymous SNV	Ints11:NM_028020:exon13:c.A1400C:p.Q467P	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	0.578571792	2	0.8749346	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr4	155889483	12A2p6	cell line	sgMsh2	155889483	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	118	0	0	NA	exonic	Pusl1	synonymous SNV	Pusl1:NM_001033490:exon7:c.T813G:p.V271V	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984797	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr4	155966486	12A2p6	cell line	sgMsh2	155966486	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	197	0	0	NA	exonic	C1qtnf12	nonsynonymous SNV	C1qtnf12:NM_026125:exon8:c.T911C:p.M304T	4qE2	chr4-145892162-156223608	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999456	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	3590589	12A2p6	cell line	sgMsh2	3590589	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	188	0	0	NA	exonic	Rbm48	nonsynonymous SNV	Rbm48:NM_172991:exon4:c.T789A:p.H263Q	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999205	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	3673162	12A2p6	cell line	sgMsh2	3673162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	227	0	0	NA	exonic	Tmbim7	nonsynonymous SNV	"Tmbim7:NM_029141:exon9:c.T692C:p.I231T,Tmbim7:NM_029154:exon9:c.T458C:p.I153T"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	1	0.9995823	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	3694788	12A2p6	cell line	sgMsh2	3694788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	131	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1552C:p.S518R,Ankib1:NM_001003909:exon18:c.A2374C:p.S792R,Ankib1:NM_001289527:exon18:c.A2392C:p.S798R,Ankib1:NM_001289529:exon18:c.A919C:p.S307R"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9991209	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	3694802	12A2p6	cell line	sgMsh2	3694802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	134	0	0	NA	exonic	Ankib1	nonsynonymous SNV	"Ankib1:NM_001289528:exon17:c.A1538G:p.D513G,Ankib1:NM_001003909:exon18:c.A2360G:p.D787G,Ankib1:NM_001289527:exon18:c.A2378G:p.D793G,Ankib1:NM_001289529:exon18:c.A905G:p.D302G"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9992253	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	4077213	12A2p6	cell line	sgMsh2	4077213	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	90	0	0	NA	exonic	Akap9	nonsynonymous SNV	Akap9:NM_194462:exon46:c.A11060G:p.H3687R	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9950637	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	5575381	12A2p6	cell line	sgMsh2	5575381	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.211	118	0	0	NA	exonic	Gm8773	synonymous SNV	Gm8773:NM_001384231:exon2:c.T76C:p.L26L	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.953739439	1	0.9936322	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	6769297	12A2p6	cell line	sgMsh2	6769297	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	175	0	0	NA	exonic	Zfp804b	synonymous SNV	Zfp804b:NM_001163223:exon4:c.T3765C:p.P1255P	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998625	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	6770762	12A2p6	cell line	sgMsh2	6770762	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	217	0	0	NA	exonic	Zfp804b	nonsynonymous SNV	Zfp804b:NM_001163223:exon4:c.G2300T:p.S767I	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.9944021	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	9121908	12A2p6	cell line	sgMsh2	9121908	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.135	43	0	0	NA	exonic	Dmtf1	synonymous SNV	"Dmtf1:NM_001110327:exon14:c.A1317G:p.P439P,Dmtf1:NM_011806:exon15:c.A1527G:p.P509P"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.610212437	2	0.07169356	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr5	13451191	12A2p6	cell line	sgMsh2	13451191	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	170	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon2:c.G200A:p.S67N,Sema3a:NM_001243072:exon3:c.G200A:p.S67N,Sema3a:NM_001243073:exon3:c.G200A:p.S67N"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998302	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	14522284	12A2p6	cell line	sgMsh2	14522284	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	153	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon2:c.G1682A:p.C561Y,Pclo:NM_011995:exon2:c.G1682A:p.C561Y"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996523	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	14678870	12A2p6	cell line	sgMsh2	14678870	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	77	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.T7741G:p.F2581V,Pclo:NM_011995:exon5:c.T7741G:p.F2581V"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.958259531	1	0.9803836	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	14681844	12A2p6	cell line	sgMsh2	14681844	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	133	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon6:c.A10359G:p.I3453M,Pclo:NM_011995:exon6:c.A10359G:p.I3453M"	5qA1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.999192	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	16359028	12A2p6	cell line	sgMsh2	16359028	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	110	0	0	NA	exonic	Cacna2d1	nonsynonymous SNV	"Cacna2d1:NM_001110846:exon32:c.T2636C:p.V879A,Cacna2d1:NM_009784:exon32:c.T2651C:p.V884A,Cacna2d1:NM_001110843:exon33:c.T2708C:p.V903A,Cacna2d1:NM_001110844:exon33:c.T2672C:p.V891A,Cacna2d1:NM_001110845:exon33:c.T2657C:p.V886A"	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.646373174	2	0.9725209	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	20886461	12A2p6	cell line	sgMsh2	20886461	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.432	160	0	0	NA	exonic	Tmem60	frameshift deletion	Tmem60:NM_177601:exon2:c.223delA:p.A78Pfs*10	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	NA	NA	TAA	frameshift	A	9	AAAAAAAAA	-1
M8_p20	chr5	20886561	12A2p6	cell line	sgMsh2	20886561	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	263	0	0	NA	exonic	Tmem60	nonsynonymous SNV	Tmem60:NM_177601:exon2:c.A323G:p.Y108C	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999966	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	21575278	12A2p6	cell line	sgMsh2	21575278	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	184	0	0	NA	exonic	Lrrc17	nonsynonymous SNV	Lrrc17:NM_028977:exon4:c.G1249A:p.D417N	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.831696951	1	0.7536228	GGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	21885520	12A2p6	cell line	sgMsh2	21885520	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	245	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon64:c.A10333G:p.R3445G	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999928	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	24331946	12A2p6	cell line	sgMsh2	24331946	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	26	0	0	NA	exonic	Kcnh2	synonymous SNV	Kcnh2:NM_013569:exon4:c.T639C:p.D213D	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9309981	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr5	24751122	12A2p6	cell line	sgMsh2	24751122	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	32	0	0	NA	exonic	Crygn	nonsynonymous SNV	Crygn:NM_153076:exon4:c.T484C:p.C162R	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	9.90E-05	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	25308533	12A2p6	cell line	sgMsh2	25308533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	162	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon39:c.G9262T:p.D3088Y	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.745815201	2	0.9240048	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	25315383	12A2p6	cell line	sgMsh2	25315383	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	161	0	0	NA	exonic	Kmt2c	nonsynonymous SNV	Kmt2c:NM_001081383:exon36:c.A5728G:p.S1910G	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9997518	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	25385690	12A2p6	cell line	sgMsh2	25385690	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	444	0	0	NA	exonic	Kmt2c	synonymous SNV	Kmt2c:NM_001081383:exon9:c.T1251G:p.L417L	5qA3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	2.62E-09	GAA	synonymous	NA	NA	NA	NA
M8_p20	chr5	29478259	12A2p6	cell line	sgMsh2	29478259	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	47	0	0	NA	exonic	Mnx1	nonsynonymous SNV	Mnx1:NM_019944:exon1:c.A17T:p.N6I	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9704615	ATT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr5	30376329	12A2p6	cell line	sgMsh2	30376329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	109	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon36:c.A4385C:p.Q1462P,Otof:NM_001313767:exon36:c.A4385C:p.Q1462P,Otof:NM_031875:exon36:c.A4445C:p.Q1482P,Otof:NM_001100395:exon37:c.A4430C:p.Q1477P"	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.876897873	1	0.9292252	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	31040436	12A2p6	cell line	sgMsh2	31040436	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	107	0	0	NA	exonic	Slc5a6	nonsynonymous SNV	"Slc5a6:NM_177870:exon9:c.A928G:p.I310V,Slc5a6:NM_001177621:exon10:c.A928G:p.I310V,Slc5a6:NM_001177622:exon10:c.A928G:p.I310V,Slc5a6:NM_001360022:exon10:c.A928G:p.I310V"	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9975842	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	31052806	12A2p6	cell line	sgMsh2	31052806	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	167	0	0	NA	exonic	Atraid	nonsynonymous SNV	"Atraid:NM_027855:exon5:c.T391C:p.W131R,Atraid:NM_212470:exon5:c.T208C:p.W70R"	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998073	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	31169119	12A2p6	cell line	sgMsh2	31169121	CTC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.456	101	0	0	NA	exonic	Gtf3c2	nonframeshift deletion	Gtf3c2:NM_027901:exon7:c.1045_1047del:p.E349del	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	NA	NA	TCT	inframe	CTC	8	CTCCTCCT	-3
M8_p20	chr5	31169892	12A2p6	cell line	sgMsh2	31169892	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	170	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.C960G:p.F320L	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.976339899	1	0.9995106	AGA	nonsynonymous	GAAT	9	GAATGAATG	NA
M8_p20	chr5	31169898	12A2p6	cell line	sgMsh2	31169898	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	169	0	0	NA	exonic	Gtf3c2	nonsynonymous SNV	Gtf3c2:NM_027901:exon6:c.T954A:p.H318Q	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.985380084	1	0.9996607	AAT	nonsynonymous	GAAT	9	GAATGAATG	NA
M8_p20	chr5	31487652	12A2p6	cell line	sgMsh2	31487652	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	63	0	0	NA	exonic	4930548H24Rik	nonsynonymous SNV	4930548H24Rik:NM_026296:exon2:c.A748G:p.T250A	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.984741	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	32485907	12A2p6	cell line	sgMsh2	32485907	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	174	0	0	NA	exonic	Ppp1cb	nonsynonymous SNV	Ppp1cb:NM_172707:exon6:c.G619A:p.D207N	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998566	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	32829963	12A2p6	cell line	sgMsh2	32829963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	283	0	0	NA	exonic	Prr14l	synonymous SNV	Prr14l:NM_194340:exon6:c.T2187C:p.T729T	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9999986	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	32831160	12A2p6	cell line	sgMsh2	32831160	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	163	0	0	NA	exonic	Prr14l	nonsynonymous SNV	Prr14l:NM_194340:exon6:c.C990A:p.S330R	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997719	AGC	nonsynonymous	CTGT	8	CTGTCTGT	NA
M8_p20	chr5	32979390	12A2p6	cell line	sgMsh2	32979390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	123	0	0	NA	exonic	Depdc5	nonsynonymous SNV	"Depdc5:NM_001360014:exon37:c.A3430G:p.T1144A,Depdc5:NM_001170567:exon39:c.A4003G:p.T1335A,Depdc5:NM_001025426:exon40:c.A4030G:p.T1344A"	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9987684	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	33389915	12A2p6	cell line	sgMsh2	33389915	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	127	0	0	NA	exonic	Uvssa	nonsynonymous SNV	"Uvssa:NM_001081101:exon5:c.T824A:p.L275Q,Uvssa:NM_027674:exon5:c.T824A:p.L275Q"	5qB1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9989595	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	34848948	12A2p6	cell line	sgMsh2	34848948	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	208	0	0	NA	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon33:c.T4200A:p.H1400Q	5qB2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.84977732	1	0.8866626	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	36818560	12A2p6	cell line	sgMsh2	36818560	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	54	0	0	NA	exonic	Man2b2	nonsynonymous SNV	Man2b2:NM_008550:exon8:c.T1150C:p.S384P	5qB3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.732254925	2	0.5022701	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	36952474	12A2p6	cell line	sgMsh2	36952474	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	132	0	0	NA	exonic	Ppp2r2c	synonymous SNV	"Ppp2r2c:NM_001360003:exon9:c.C1134T:p.R378R,Ppp2r2c:NM_172994:exon9:c.C1176T:p.R392R"	5qB3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9991572	GCG	synonymous	GT	9	GTGTGTGTG	NA
M8_p20	chr5	49960819	12A2p6	cell line	sgMsh2	49960819	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	123	0	0	NA	exonic	Adgra3	nonsynonymous SNV	Adgra3:NM_133911:exon19:c.A3386G:p.N1129S	5qB3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.9731415	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	52154101	12A2p6	cell line	sgMsh2	52154101	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.416	70	0	0	NA	exonic	Dhx15	nonsynonymous SNV	"Dhx15:NM_001042620:exon12:c.A2036C:p.D679A,Dhx15:NM_007839:exon12:c.A2036C:p.D679A"	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9885981	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	52808267	12A2p6	cell line	sgMsh2	52808267	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	146	0	0	NA	exonic	Zcchc4	synonymous SNV	"Zcchc4:NM_001309445:exon7:c.C264T:p.S88S,Zcchc4:NM_001308144:exon8:c.C912T:p.S304S,Zcchc4:NM_030185:exon8:c.C912T:p.S304S"	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995329	GCC	synonymous	NA	NA	NA	NA
M8_p20	chr5	52848016	12A2p6	cell line	sgMsh2	52848016	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	47	0	0	NA	exonic	Anapc4	nonsynonymous SNV	Anapc4:NM_024213:exon11:c.A902G:p.Q301R	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.904018425	1	0.9091748	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	54104450	12A2p6	cell line	sgMsh2	54104450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	151	0	0	NA	exonic	Stim2	nonsynonymous SNV	"Stim2:NM_001081103:exon6:c.T683C:p.V228A,Stim2:NM_001363348:exon6:c.T683C:p.V228A,Stim2:NM_054083:exon6:c.T683C:p.V228A"	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996217	GTT	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr5	57721359	12A2p6	cell line	sgMsh2	57721359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	227	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310606:exon1:c.T2255C:p.L752S,Pcdh7:NM_001310608:exon1:c.T2255C:p.L752S,Pcdh7:NM_018764:exon1:c.T2255C:p.L752S"	5qC1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.754855385	2	0.972509	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	63806698	12A2p6	cell line	sgMsh2	63806698	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	224	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A3624T:p.K1208N	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999826	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	65423205	12A2p6	cell line	sgMsh2	65423205	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	70	0	0	NA	exonic	Ugdh	nonsynonymous SNV	Ugdh:NM_009466:exon5:c.A619G:p.K207E	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9885981	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	66026725	12A2p6	cell line	sgMsh2	66026725	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.564	52	0	0	NA	exonic	Rbm47	synonymous SNV	"Rbm47:NM_001291226:exon4:c.A534G:p.V178V,Rbm47:NM_139065:exon4:c.A534G:p.V178V,Rbm47:NM_178446:exon4:c.A534G:p.V178V,Rbm47:NM_001127382:exon5:c.A534G:p.V178V"	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9759459	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr5	66289419	12A2p6	cell line	sgMsh2	66289419	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.33	166	0	0	NA	exonic	Nsun7	nonsynonymous SNV	"Nsun7:NM_001302834:exon9:c.T1199C:p.V400A,Nsun7:NM_027602:exon9:c.T1301C:p.F434S,Nsun7:NM_001302833:exon10:c.T1301C:p.F434S"	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.999799	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	69110610	12A2p6	cell line	sgMsh2	69110610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	137	0	0	NA	exonic	Kctd8	stopgain	Kctd8:NM_175519:exon2:c.C1156T:p.Q386X	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9993173	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	69541162	12A2p6	cell line	sgMsh2	69541162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	37	0	0	NA	exonic	Yipf7	nonsynonymous SNV	Yipf7:NM_023784:exon2:c.A1G:p.M1V	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9556195	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	70777242	12A2p6	cell line	sgMsh2	70777242	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.36	49	0	0	NA	exonic	Gabrg1	frameshift deletion	Gabrg1:NM_010252:exon7:c.792delT:p.F264Lfs*2	5qC3.1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
M8_p20	chr5	72604907	12A2p6	cell line	sgMsh2	72604907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	233	0	0	NA	exonic	Cnga1	synonymous SNV	Cnga1:NM_007723:exon9:c.T1263C:p.D421D	5qC3.2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999881	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr5	73639485	12A2p6	cell line	sgMsh2	73639485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	201	0	0	NA	exonic	Sgcb	nonsynonymous SNV	Sgcb:NM_011890:exon5:c.C657G:p.N219K	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999541	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	76230331	12A2p6	cell line	sgMsh2	76230331	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.542	150	0	0	NA	exonic	Clock	nonsynonymous SNV	"Clock:NM_001305222:exon19:c.T1721G:p.L574W,Clock:NM_001289826:exon20:c.T1721G:p.L574W,Clock:NM_007715:exon20:c.T1721G:p.L574W"	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9996054	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	76254444	12A2p6	cell line	sgMsh2	76254444	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.884	112	0	0	NA	exonic	Clock	stopgain	"Clock:NM_001305222:exon7:c.368delT:p.L123fs*0,Clock:NM_001289826:exon8:c.368delT:p.L123fs*0,Clock:NM_007715:exon8:c.368delT:p.L123fs*0"	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	NA	NA	TAA	nonsynonymous	A	9	AAAAAAAAA	-1
M8_p20	chr5	76857279	12A2p6	cell line	sgMsh2	76857279	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	36	0	0	NA	exonic	Cracd	stopgain	Cracd:NM_001163793:exon6:c.G1486T:p.G496X	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.940179162	1	0.921228	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	76876207	12A2p6	cell line	sgMsh2	76876207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	110	0	0	NA	exonic	Aasdh	synonymous SNV	"Aasdh:NM_173765:exon16:c.A3120G:p.A1040A,Aasdh:NM_001377004:exon17:c.A3120G:p.A1040A"	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9978708	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr5	77282549	12A2p6	cell line	sgMsh2	77282549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	0	0	NA	exonic	Rest	synonymous SNV	Rest:NM_011263:exon4:c.T2814C:p.T938T	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9976838	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr5	77320214	12A2p6	cell line	sgMsh2	77320214	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	77	0	0	NA	exonic	Polr2b	synonymous SNV	Polr2b:NM_153798:exon5:c.T360C:p.Y120Y	5qC3.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.867857688	1	9.70E-06	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr5	86533695	12A2p6	cell line	sgMsh2	86533695	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.573	122	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon8:c.A698G:p.Q233R	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9987155	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	86538011	12A2p6	cell line	sgMsh2	86538011	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	152	0	0	NA	exonic	Tmprss11f	nonsynonymous SNV	Tmprss11f:NM_178730:exon6:c.A496G:p.M166V	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9996373	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	87486131	12A2p6	cell line	sgMsh2	87486131	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	176	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.T616A:p.S206T	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9998682	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	87486311	12A2p6	cell line	sgMsh2	87486311	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.331	133	0	0	NA	exonic	Ugt2a1	nonsynonymous SNV	Ugt2a1:NM_053184:exon2:c.G436A:p.E146K	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.999192	TCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	87694728	12A2p6	cell line	sgMsh2	87694728	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	112	0	0	NA	exonic	Csn2	nonsynonymous SNV	"Csn2:NM_001286023:exon5:c.G394A:p.A132T,Csn2:NM_001286024:exon5:c.G391A:p.A131T,Csn2:NM_001286022:exon6:c.G412A:p.A138T,Csn2:NM_001286020:exon7:c.G436A:p.A146T,Csn2:NM_001286021:exon7:c.G436A:p.A146T,Csn2:NM_009972:exon7:c.G439A:p.A147T"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9980427	GCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	87842797	12A2p6	cell line	sgMsh2	87842797	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	194	0	0	NA	exonic	Prr27	stopgain	"Prr27:NM_028648:exon4:c.T243A:p.Y81X,Prr27:NM_001163551:exon5:c.T267A:p.Y89X"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999383	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	87842828	12A2p6	cell line	sgMsh2	87842828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	165	0	0	NA	exonic	Prr27	nonsynonymous SNV	"Prr27:NM_028648:exon4:c.T274C:p.Y92H,Prr27:NM_001163551:exon5:c.T298C:p.Y100H"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997904	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	89700438	12A2p6	cell line	sgMsh2	89700438	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	203	0	0	NA	exonic	Adamts3	nonsynonymous SNV	"Adamts3:NM_001081401:exon14:c.C2024A:p.P675Q,Adamts3:NM_177872:exon14:c.C2024A:p.P675Q"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.971819807	1	0.9998097	TGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	89707831	12A2p6	cell line	sgMsh2	89707831	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.414	168	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1179G:p.A393A,Adamts3:NM_177872:exon8:c.T1179G:p.A393A"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9998153	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	89707843	12A2p6	cell line	sgMsh2	89707843	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	159	0	0	NA	exonic	Adamts3	synonymous SNV	"Adamts3:NM_001081401:exon8:c.T1167G:p.G389G,Adamts3:NM_177872:exon8:c.T1167G:p.G389G"	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.99973	AAC	synonymous	A	5	AAAAA	NA
M8_p20	chr5	90801259	12A2p6	cell line	sgMsh2	90801259	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	263	0	0	NA	exonic	Cxcl15	synonymous SNV	Cxcl15:NM_011339:exon4:c.T282C:p.P94P	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999966	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr5	91141036	12A2p6	cell line	sgMsh2	91141036	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	123	0	0	NA	exonic	Areg	nonsynonymous SNV	Areg:NM_009704:exon2:c.G200T:p.S67I	5qE1	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9987684	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	91594312	12A2p6	cell line	sgMsh2	91594312	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	50	0	0	NA	exonic	Parm1	nonsynonymous SNV	Parm1:NM_145562:exon2:c.G538A:p.A180T	5qE2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.578571792	2	0.7659843	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	92431064	12A2p6	cell line	sgMsh2	92431064	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	281	0	0	NA	exonic	Nup54	synonymous SNV	"Nup54:NM_183392:exon2:c.A126G:p.S42S,Nup54:NM_001359995:exon3:c.A288G:p.S96S"	5qE2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999984	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr5	100365840	12A2p6	cell line	sgMsh2	100365840	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	39	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.A2321G:p.Q774R,Sec31a:NM_001359332:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359344:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359348:exon24:c.A3173G:p.Q1058R,Sec31a:NM_001359350:exon24:c.A3128G:p.Q1043R,Sec31a:NM_001359323:exon25:c.A3221G:p.Q1074R,Sec31a:NM_026969:exon25:c.A3212G:p.Q1071R"	5qE4	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9590719	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	100392572	12A2p6	cell line	sgMsh2	100392572	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	93	0	0	NA	exonic	Sec31a	synonymous SNV	"Sec31a:NM_001359349:exon10:c.T447C:p.A149A,Sec31a:NM_001359323:exon11:c.T1254C:p.A418A,Sec31a:NM_001359332:exon11:c.T1254C:p.A418A,Sec31a:NM_001359344:exon11:c.T1254C:p.A418A,Sec31a:NM_001359348:exon11:c.T1254C:p.A418A,Sec31a:NM_001359350:exon11:c.T1254C:p.A418A,Sec31a:NM_026969:exon11:c.T1254C:p.A418A"	5qE4	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9956479	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	101851333	12A2p6	cell line	sgMsh2	101851333	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	94	0	0	NA	exonic	Wdfy3	synonymous SNV	Wdfy3:NM_172882:exon60:c.C9216T:p.P3072P	5qE4	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.980859991	1	0.9933153	TGG	synonymous	TTGGGG	12	TTGGGGTTGGGG	NA
M8_p20	chr5	101907537	12A2p6	cell line	sgMsh2	101907537	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	146	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon29:c.A4666G:p.M1556V	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995329	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	101944090	12A2p6	cell line	sgMsh2	101944090	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	131	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1382G:p.K461R	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9991209	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	101944143	12A2p6	cell line	sgMsh2	101944143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	130	0	0	NA	exonic	Wdfy3	nonsynonymous SNV	Wdfy3:NM_172882:exon11:c.A1329T:p.K443N	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.999083	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	102926091	12A2p6	cell line	sgMsh2	102926091	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	319	0	0	NA	exonic	Mapk10	nonsynonymous SNV	"Mapk10:NM_001310685:exon11:c.A1233C:p.K411N,Mapk10:NM_001310686:exon11:c.A1119C:p.K373N,Mapk10:NM_001318131:exon11:c.A1233C:p.K411N,Mapk10:NM_001081567:exon13:c.A1233C:p.K411N,Mapk10:NM_001310683:exon13:c.A1119C:p.K373N,Mapk10:NM_009158:exon13:c.A1233C:p.K411N"	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999997	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	103551084	12A2p6	cell line	sgMsh2	103551084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	289	0	0	NA	exonic	Ptpn13	synonymous SNV	Ptpn13:NM_011204:exon23:c.A3432G:p.E1144E	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999989	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	105015021	12A2p6	cell line	sgMsh2	105015021	T	-	Deletion	Strelka2;Vardict	2	0.15	180	0	0	NA	exonic	Gbp8	frameshift deletion	Gbp8:NM_029509:exon10:c.1506delA:p.K502Nfs*32	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.678013819	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr5	105813013	12A2p6	cell line	sgMsh2	105813013	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	119	0	0	NA	exonic	Lrrc8d	nonsynonymous SNV	"Lrrc8d:NM_001122768:exon3:c.C1288A:p.L430I,Lrrc8d:NM_178701:exon3:c.C1288A:p.L430I"	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.949219347	1	0.9928856	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	105906014	12A2p6	cell line	sgMsh2	105906014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	92	0	0	NA	exonic	Zfp326	synonymous SNV	Zfp326:NM_018759:exon8:c.T1026C:p.H342H	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9954612	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr5	106973955	12A2p6	cell line	sgMsh2	106973955	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	158	0	0	NA	exonic	Cdc7	nonsynonymous SNV	"Cdc7:NM_001271566:exon7:c.A733G:p.T245A,Cdc7:NM_001271567:exon7:c.A733G:p.T245A,Cdc7:NM_001271568:exon7:c.A733G:p.T245A,Cdc7:NM_009863:exon7:c.A733G:p.T245A"	5qE5	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9997184	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	107748162	12A2p6	cell line	sgMsh2	107748162	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	101	0	0	NA	exonic	Evi5	nonsynonymous SNV	"Evi5:NM_007964:exon18:c.A2414G:p.Y805C,Evi5:NM_001378825:exon19:c.A2315G:p.Y772C,Evi5:NM_001378824:exon20:c.A2462G:p.Y821C"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.555971332	2	0.7637658	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	108189007	12A2p6	cell line	sgMsh2	108189007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	117	0	0	NA	exonic	Ccdc18	nonsynonymous SNV	Ccdc18:NM_028481:exon17:c.A2251G:p.K751E	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9984143	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	108332781	12A2p6	cell line	sgMsh2	108332781	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	215	0	0	NA	exonic	Pigg	nonsynonymous SNV	"Pigg:NM_001081234:exon8:c.A1406G:p.Y469C,Pigg:NM_001310689:exon8:c.A1430G:p.Y477C,Pigg:NM_001370998:exon8:c.A1430G:p.Y477C"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.777455846	2	0.882712	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	108650511	12A2p6	cell line	sgMsh2	108650511	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	35	0	0	NA	exonic	Dgkq	nonsynonymous SNV	"Dgkq:NM_001357029:exon17:c.G1285T:p.A429S,Dgkq:NM_199011:exon17:c.G1990T:p.A664S"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.940179162	1	0.9192677	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	108797421	12A2p6	cell line	sgMsh2	108797421	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	457	0	0	NA	exonic	Vmn2r8	synonymous SNV	Vmn2r8:NM_001104620:exon6:c.A2319G:p.E773E	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	1.94E-09	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	109156155	12A2p6	cell line	sgMsh2	109156155	A	C	SNV	Mutect2;Vardict	2	0.022	565	0	0	NA	exonic	Vmn2r13	synonymous SNV	"Vmn2r13:NM_001104624:exon6:c.T2409G:p.V803V,Vmn2r13:NM_001384974:exon6:c.T2406G:p.V802V"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.099442027	3	1	CAA	synonymous	ACA	8	ACAACAAC	NA
M8_p20	chr5	109220450	12A2p6	cell line	sgMsh2	109220450	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	589	0	0	NA	exonic	Vmn2r14	synonymous SNV	"Vmn2r14:NM_001104625:exon3:c.A675G:p.E225E,Vmn2r14:NM_001384975:exon3:c.A675G:p.E225E"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.768415662	2	0.9999293	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	110277756	12A2p6	cell line	sgMsh2	110277756	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	148	0	0	NA	exonic	Pxmp2	nonsynonymous SNV	Pxmp2:NM_008993:exon4:c.T412C:p.F138L	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.953739439	1	0.9974015	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	111224177	12A2p6	cell line	sgMsh2	111224177	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	93	0	0	NA	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.T2491C:p.Y831H	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.682533911	2	0.9074509	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	112370605	12A2p6	cell line	sgMsh2	112370605	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	47	0	0	NA	exonic	Hps4	nonsynonymous SNV	"Hps4:NM_001359853:exon11:c.C1463T:p.T488I,Hps4:NM_138646:exon11:c.C1463T:p.T488I"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9704615	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	113235995	12A2p6	cell line	sgMsh2	113235995	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.341	61	0	0	NA	exonic	Tmem211	frameshift deletion	Tmem211:NM_001033428:exon4:c.278delC:p.R95Efs*24	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr5	113746662	12A2p6	cell line	sgMsh2	113746662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	124	0	0	NA	exonic	Sart3	nonsynonymous SNV	"Sart3:NM_001356621:exon15:c.A1934G:p.D645G,Sart3:NM_001356623:exon15:c.A713G:p.D238G,Sart3:NM_016926:exon15:c.A1880G:p.D627G"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.628292806	2	0.9786772	GTC	nonsynonymous	TCCTCG	17	TCCTCGTCCTCGTCCTC	NA
M8_p20	chr5	114730266	12A2p6	cell line	sgMsh2	114730266	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	107	0	0	NA	exonic	Git2	synonymous SNV	"Git2:NM_001077360:exon18:c.A1956G:p.T652T,Git2:NM_001077359:exon19:c.A1959G:p.T653T,Git2:NM_019834:exon19:c.A2043G:p.T681T,Git2:NM_001347400:exon20:c.A2196G:p.T732T"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9975842	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr5	114901288	12A2p6	cell line	sgMsh2	114901288	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	71	0	0	NA	exonic	Oasl2	nonsynonymous SNV	Oasl2:NM_011854:exon3:c.T536C:p.L179P	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9890639	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	115609574	12A2p6	cell line	sgMsh2	115609574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	55	0	0	NA	exonic	Gcn1	nonsynonymous SNV	Gcn1:NM_172719:exon40:c.A5125C:p.S1709R	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9787452	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	116134059	12A2p6	cell line	sgMsh2	116134059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	80	0	0	NA	exonic	Ccdc60	nonsynonymous SNV	"Ccdc60:NM_001360004:exon12:c.A1312G:p.K438E,Ccdc60:NM_177759:exon12:c.A1315G:p.K439E"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.78649603	1	0.595499	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	118749760	12A2p6	cell line	sgMsh2	118749760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	67	0	0	NA	exonic	Med13l	synonymous SNV	"Med13l:NM_001347445:exon22:c.T5098C:p.L1700L,Med13l:NM_172424:exon22:c.T5098C:p.L1700L"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9870797	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	121348608	12A2p6	cell line	sgMsh2	121348608	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	16	0	0	NA	exonic	Hectd4	nonsynonymous SNV	Hectd4:NM_181421:exon61:c.A9665C:p.K3222T	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.8972155	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	121353538	12A2p6	cell line	sgMsh2	121353538	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.42	57	0	0	NA	exonic	Hectd4	frameshift deletion	Hectd4:NM_181421:exon63:c.11038delA:p.S3681Afs*8	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8_p20	chr5	121828780	12A2p6	cell line	sgMsh2	121828780	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.8	4	0	0	NA	exonic	Sh2b3	synonymous SNV	"Sh2b3:NM_001306128:exon2:c.T270A:p.T90T,Sh2b3:NM_008507:exon2:c.T270A:p.T90T,Sh2b3:NM_001306126:exon3:c.T270A:p.T90T,Sh2b3:NM_001306127:exon3:c.T270A:p.T90T"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.8295125	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr5	122882230	12A2p6	cell line	sgMsh2	122882230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	78	0	0	NA	exonic	Kdm2b	nonsynonymous SNV	Kdm2b:NM_001378864:exon5:c.T514C:p.Y172H	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9918373	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	123758488	12A2p6	cell line	sgMsh2	123758488	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	177	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon5:c.A412G:p.N138D	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9998736	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	123769691	12A2p6	cell line	sgMsh2	123769691	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	137	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon17:c.T1354C:p.W452R	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.944699254	1	0.9950039	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	123781766	12A2p6	cell line	sgMsh2	123781766	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	92	0	0	NA	exonic	Kntc1	nonsynonymous SNV	Kntc1:NM_001042421:exon30:c.T2699A:p.I900N	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9954612	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	123879247	12A2p6	cell line	sgMsh2	123879247	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	148	0	0	NA	exonic	Hcar1	nonsynonymous SNV	Hcar1:NM_175520:exon1:c.A356G:p.H119R	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9995707	GTG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr5	124083060	12A2p6	cell line	sgMsh2	124083060	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	60	0	0	NA	exonic	Abcb9	nonsynonymous SNV	Abcb9:NM_019875:exon4:c.A827C:p.N276T	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9827178	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	124395967	12A2p6	cell line	sgMsh2	124395967	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	118	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon16:c.T2050C:p.L684L,Sbno1:NM_001359978:exon16:c.T2050C:p.L684L,Sbno1:NM_001359979:exon16:c.T2047C:p.L683L"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984797	AAA	synonymous	NA	NA	NA	NA
M8_p20	chr5	124404206	12A2p6	cell line	sgMsh2	124404206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	254	0	0	NA	exonic	Sbno1	synonymous SNV	"Sbno1:NM_001081203:exon8:c.T1023C:p.S341S,Sbno1:NM_001359978:exon8:c.T1023C:p.S341S,Sbno1:NM_001359979:exon8:c.T1020C:p.S340S"	5qF	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9999951	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr5	127563656	12A2p6	cell line	sgMsh2	127563656	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.378	49	0	0	NA	exonic	Tmem132c	nonsynonymous SNV	Tmem132c:NM_175432:exon9:c.G2890A:p.A964T	5qG1.2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9727877	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	128754057	12A2p6	cell line	sgMsh2	128754057	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	105	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon21:c.A2441G:p.Y814C	5qG1.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9973721	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	130248310	12A2p6	cell line	sgMsh2	130248310	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	62	0	0	NA	exonic	Sbds	nonsynonymous SNV	Sbds:NM_023248:exon4:c.G600T:p.E200D	5qG1.3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9840939	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	134216601	12A2p6	cell line	sgMsh2	134216601	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	78	0	0	NA	exonic	Gtf2ird2	nonsynonymous SNV	"Gtf2ird2:NM_001359852:exon15:c.A1643C:p.N548T,Gtf2ird2:NM_053266:exon16:c.A1700C:p.N567T"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9918373	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	134559086	12A2p6	cell line	sgMsh2	134559086	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	136	0	0	NA	exonic	Syna	synonymous SNV	Syna:NM_001013751:exon1:c.T1008C:p.G336G	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9992879	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr5	135987305	12A2p6	cell line	sgMsh2	135987305	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	152	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.T885A:p.D295E	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.885938057	1	0.9663284	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	136012389	12A2p6	cell line	sgMsh2	136012389	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	137	0	0	NA	exonic	Dtx2	nonsynonymous SNV	"Dtx2:NM_001256096:exon4:c.A647G:p.H216R,Dtx2:NM_001256098:exon4:c.A647G:p.H216R,Dtx2:NM_023742:exon4:c.A647G:p.H216R,Dtx2:NM_001256097:exon5:c.A647G:p.H216R"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.565011516	2	0.8026446	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	137605166	12A2p6	cell line	sgMsh2	137605166	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	118	0	0	NA	exonic	Pcolce	synonymous SNV	Pcolce:NM_008788:exon9:c.C1404T:p.A468A	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9984797	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr5	137613837	12A2p6	cell line	sgMsh2	137613837	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	90	0	0	NA	exonic	Fbxo24	nonsynonymous SNV	Fbxo24:NM_027708:exon9:c.T1243C:p.Y415H	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9950637	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	138125448	12A2p6	cell line	sgMsh2	138125448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	143	0	0	NA	exonic	Zscan21	nonsynonymous SNV	"Zscan21:NM_001044703:exon2:c.T388C:p.Y130H,Zscan21:NM_001044705:exon2:c.T388C:p.Y130H,Zscan21:NM_001044704:exon3:c.T388C:p.Y130H,Zscan21:NM_011757:exon3:c.T388C:p.Y130H"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9994699	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	138178383	12A2p6	cell line	sgMsh2	138178383	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	76	0	0	NA	exonic	Ap4m1	nonsynonymous SNV	Ap4m1:NM_021392:exon15:c.T1244G:p.L415R	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9911251	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	139225354	12A2p6	cell line	sgMsh2	139225354	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	194	0	0	NA	exonic	Sun1	nonsynonymous SNV	"Sun1:NM_001256118:exon3:c.A361G:p.S121G,Sun1:NM_001256115:exon4:c.A361G:p.S121G,Sun1:NM_001256116:exon4:c.A361G:p.S121G,Sun1:NM_001256117:exon4:c.A361G:p.S121G,Sun1:NM_001359494:exon4:c.A361G:p.S121G,Sun1:NM_001359496:exon4:c.A361G:p.S121G,Sun1:NM_024451:exon4:c.A361G:p.S121G"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	2	1	1	0.9999383	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	139393185	12A2p6	cell line	sgMsh2	139393185	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	78	0	0	NA	exonic	Gpr146	synonymous SNV	"Gpr146:NM_001038703:exon2:c.T741C:p.P247P,Gpr146:NM_001362206:exon2:c.T741C:p.P247P,Gpr146:NM_030258:exon2:c.T741C:p.P247P"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9918373	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	139824023	12A2p6	cell line	sgMsh2	139824023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	135	0	0	NA	exonic	Psmg3	synonymous SNV	"Psmg3:NM_001356963:exon3:c.A267G:p.E89E,Psmg3:NM_025604:exon3:c.A267G:p.E89E"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9992573	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr5	140310711	12A2p6	cell line	sgMsh2	140310711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	37	0	0	NA	exonic	Mad1l1	nonsynonymous SNV	"Mad1l1:NM_001359025:exon3:c.C175T:p.R59C,Mad1l1:NM_010752:exon3:c.C175T:p.R59C"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9556195	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	140908580	12A2p6	cell line	sgMsh2	140908580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	116	0	0	NA	exonic	Card11	nonsynonymous SNV	Card11:NM_175362:exon4:c.A293G:p.Y98C	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9983461	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	142905673	12A2p6	cell line	sgMsh2	142905673	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	77	0	0	NA	exonic	Actb	nonsynonymous SNV	Actb:NM_007393:exon2:c.T14C:p.I5T	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9914886	GAT	nonsynonymous	CAGCG	10	CAGCGCAGCG	NA
M8_p20	chr5	143891512	12A2p6	cell line	sgMsh2	143891512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	124	0	0	NA	exonic	Ankrd61	nonsynonymous SNV	"Ankrd61:NM_001310772:exon3:c.T518C:p.M173T,Ankrd61:NM_025732:exon3:c.T644C:p.M215T"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9988193	CAT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr5	145136945	12A2p6	cell line	sgMsh2	145136945	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.224	85	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A62G:p.E21G	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9939116	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	145136952	12A2p6	cell line	sgMsh2	145136952	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	81	0	0	NA	exonic	Pdap1	nonsynonymous SNV	Pdap1:NM_001033313:exon2:c.A55G:p.S19G	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9928006	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	145220074	12A2p6	cell line	sgMsh2	145220074	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	107	0	0	NA	exonic	Zkscan5	nonsynonymous SNV	"Zkscan5:NM_001167944:exon4:c.A1166C:p.N389T,Zkscan5:NM_001359190:exon4:c.A719C:p.N240T,Zkscan5:NM_001359192:exon4:c.A1003C:p.T335P,Zkscan5:NM_001359187:exon6:c.A1340C:p.N447T,Zkscan5:NM_001359188:exon6:c.A938C:p.N313T,Zkscan5:NM_001359189:exon6:c.A824C:p.N275T,Zkscan5:NM_001359191:exon6:c.A1222C:p.T408P,Zkscan5:NM_016683:exon6:c.A1385C:p.N462T"	5qG2	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.822656767	1	0.7363759	AAC	nonsynonymous	AGA	14	AGAAGAAGTAAGAA	NA
M8_p20	chr5	146298837	12A2p6	cell line	sgMsh2	146298837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	266	0	0	NA	exonic	Cdk8	nonsynonymous SNV	"Cdk8:NM_001359990:exon10:c.G968A:p.R323Q,Cdk8:NM_001359991:exon10:c.G773A:p.R258Q,Cdk8:NM_153599:exon10:c.G968A:p.R323Q"	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.999997	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	147315169	12A2p6	cell line	sgMsh2	147315169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	52	0	0	NA	exonic	Urad	nonsynonymous SNV	Urad:NM_001039678:exon2:c.A472G:p.S158G	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9759459	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	147519728	12A2p6	cell line	sgMsh2	147519728	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	52	0	0	NA	exonic	Pan3	synonymous SNV	"Pan3:NM_028291:exon6:c.A1062G:p.T354T,Pan3:NM_001359433:exon7:c.A288G:p.T96T"	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9759459	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr5	147578339	12A2p6	cell line	sgMsh2	147578339	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	205	0	0	NA	exonic	Flt1	nonsynonymous SNV	Flt1:NM_010228:exon24:c.A3272G:p.E1091G	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.976339899	1	0.9998609	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	148077006	12A2p6	cell line	sgMsh2	148077006	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	43	0	0	NA	exonic	Mtus2	nonsynonymous SNV	"Mtus2:NM_001359503:exon2:c.C608A:p.P203H,Mtus2:NM_029920:exon2:c.C608A:p.P203H"	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	1	1	0.9652154	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	150436942	12A2p6	cell line	sgMsh2	150436942	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	68	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon44:c.A6052G:p.T2018A	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.899498333	1	0.9294785	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr5	150445911	12A2p6	cell line	sgMsh2	150445911	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	164	0	0	NA	exonic	Fry	synonymous SNV	Fry:NM_172887:exon47:c.A6849G:p.V2283V	5qG3	chr5-3344373-151647482	3	2	1	0.9	4.068082914	NA	1	0.867857688	1	0.9383116	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr5	151648294	12A2p6	cell line	sgMsh2	151648294	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.51	71	0	0	NA	exonic	Rfc3	frameshift deletion	Rfc3:NM_027009:exon3:c.244delA:p.I82Lfs*25	5qG3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATT	frameshift	T	10	TTTTTTTTTT	-1
M8_p20	chr6	3494413	12A2p6	cell line	sgMsh2	3494413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	107	0	0	NA	exonic	Hepacam2	synonymous SNV	Hepacam2:NM_178899:exon1:c.C66T:p.H22H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.687054003	2	0.9397258	GGT	synonymous	AAG	9	AAGAAGAAG	NA
M8_p20	chr6	4539580	12A2p6	cell line	sgMsh2	4539580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	180	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon51:c.G3847A:p.A1283T	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.863337596	1	0.9325192	TGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	4624163	12A2p6	cell line	sgMsh2	4624163	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	195	0	0	NA	exonic	Casd1	nonsynonymous SNV	"Casd1:NM_001379145:exon1:c.T106C:p.F36L,Casd1:NM_001379144:exon6:c.T571C:p.F191L,Casd1:NM_001379143:exon9:c.T955C:p.F319L,Casd1:NM_145398:exon9:c.T955C:p.F319L"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.863337596	1	0.9381431	CTT	nonsynonymous	GCTT	8	GCTTGCTT	NA
M8_p20	chr6	4754460	12A2p6	cell line	sgMsh2	4754460	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	340	0	0	NA	exonic	Peg10	synonymous SNV	Peg10:NM_001040611:exon2:c.G240A:p.L80L	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.931138978	1	0.999938	TGC	synonymous	NA	NA	NA	NA
M8_p20	chr6	5077585	12A2p6	cell line	sgMsh2	5077585	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	191	0	0	NA	exonic	Ppp1r9a	synonymous SNV	"Ppp1r9a:NM_001363809:exon6:c.C1863T:p.H621H,Ppp1r9a:NM_181595:exon6:c.C1863T:p.H621H"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.800056306	2	0.619638	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr6	5171850	12A2p6	cell line	sgMsh2	5171850	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	53	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon8:c.T800C:p.L267P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.732254925	1	0.005159017	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	5181550	12A2p6	cell line	sgMsh2	5181550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	176	0	0	NA	exonic	Pon1	nonsynonymous SNV	Pon1:NM_011134:exon5:c.T386C:p.L129P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.366127462	3	0.9999696	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	6867087	12A2p6	cell line	sgMsh2	6867087	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	188	0	0	NA	exonic	Dlx6	nonsynonymous SNV	Dlx6:NM_010057:exon3:c.T689C:p.L230P	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	2	0.9928046	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	7677232	12A2p6	cell line	sgMsh2	7677232	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	329	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon9:c.G1237A:p.G413S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.714174556	2	0.9999148	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	7685382	12A2p6	cell line	sgMsh2	7685382	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.117	193	0	0	NA	exonic	Asns	nonsynonymous SNV	Asns:NM_012055:exon3:c.T274C:p.Y92H	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.528850779	3	0.7428917	TAT	nonsynonymous	ATTCAA	13	ATTCAAATTCAAA	NA
M8_p20	chr6	7689441	12A2p6	cell line	sgMsh2	7689441	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	146	0	0	NA	exonic	Asns	synonymous SNV	Asns:NM_012055:exon2:c.T60C:p.S20S	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.533370871	3	0.5406618	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr6	8083742	12A2p6	cell line	sgMsh2	8083742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	376	0	0	NA	exonic	Col28a1	nonsynonymous SNV	Col28a1:NM_001037865:exon21:c.G1714T:p.G572W	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.470089581	3	0.9999848	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	12352113	12A2p6	cell line	sgMsh2	12352113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	89	0	0	NA	exonic	Thsd7a	nonsynonymous SNV	Thsd7a:NM_001164805:exon14:c.A3082G:p.S1028G	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	0.976339899	1	0.9910719	CTG	nonsynonymous	CACT	8	CACTCACT	NA
M8_p20	chr6	13186912	12A2p6	cell line	sgMsh2	13186912	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	422	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon12:c.T2575A:p.L859I,Vwde:NM_001368871:exon12:c.T2575A:p.L859I"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.682533911	2	0.9999999	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	13193189	12A2p6	cell line	sgMsh2	13193189	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	203	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon8:c.A1150G:p.T384A,Vwde:NM_001368871:exon8:c.A1150G:p.T384A"	6qA1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.601172253	2	0.9760616	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	17286929	12A2p6	cell line	sgMsh2	17286929	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	337	0	0	NA	exonic	Cav2	nonsynonymous SNV	Cav2:NM_016900:exon3:c.T371C:p.M124T	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.863337596	1	0.9733975	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	17308002	12A2p6	cell line	sgMsh2	17308002	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	359	0	0	NA	exonic	Cav1	nonsynonymous SNV	"Cav1:NM_001243064:exon1:c.T59C:p.L20P,Cav1:NM_007616:exon2:c.T152C:p.L51P"	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.678013819	2	0.9999984	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	17660758	12A2p6	cell line	sgMsh2	17660758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	322	0	0	NA	exonic	Capza2	synonymous SNV	Capza2:NM_007604:exon7:c.T516C:p.R172R	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	3	0.9999968	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr6	17660784	12A2p6	cell line	sgMsh2	17660784	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	311	0	0	NA	exonic	Capza2	nonsynonymous SNV	Capza2:NM_007604:exon7:c.T542G:p.V181G	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.452009213	3	0.9999788	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	18405230	12A2p6	cell line	sgMsh2	18405230	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	533	0	0	NA	exonic	Cttnbp2	nonsynonymous SNV	Cttnbp2:NM_080285:exon12:c.A3269G:p.Y1090C	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	2	0.9999829	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	21216663	12A2p6	cell line	sgMsh2	21216663	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	182	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.T365C:p.F122S	6qA2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.759375477	2	0.9123935	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	21772734	12A2p6	cell line	sgMsh2	21772734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.667	321	0	0	NA	exonic	Tspan12	nonsynonymous SNV	"Tspan12:NM_001363814:exon7:c.C671T:p.S224L,Tspan12:NM_173007:exon9:c.C815T:p.S272L"	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	4	1	1	0.9999997	TGA	nonsynonymous	ATGAC	11	ATGACATGACA	NA
M8_p20	chr6	23649045	12A2p6	cell line	sgMsh2	23649045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	275	0	0	NA	exonic	Rnf133	nonsynonymous SNV	Rnf133:NM_198251:exon2:c.A884G:p.Y295C	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.5740517	2	0.8719001	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	25669428	12A2p6	cell line	sgMsh2	25669428	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	136	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon2:c.T1416G:p.H472Q	6qA3.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	1	0.97029	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	29455870	12A2p6	cell line	sgMsh2	29455870	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	218	0	0	NA	exonic	Flnc	nonsynonymous SNV	"Flnc:NM_001311074:exon37:c.A6199G:p.T2067A,Flnc:NM_001081185:exon38:c.A6298G:p.T2100A"	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.533370871	3	0.7486517	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	30815960	12A2p6	cell line	sgMsh2	30815960	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	183	0	0	NA	exonic	Copg2	nonsynonymous SNV	Copg2:NM_017478:exon14:c.T1439C:p.V480A	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.519810595	3	0.8131607	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	31477931	12A2p6	cell line	sgMsh2	31477931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	388	0	0	NA	exonic	Mkln1	nonsynonymous SNV	Mkln1:NM_013791:exon12:c.A1400G:p.N467S	6qA3.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.614732529	2	0.9993128	AAC	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr6	35270381	12A2p6	cell line	sgMsh2	35270381	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	182	0	0	NA	exonic	Slc13a4	nonsynonymous SNV	Slc13a4:NM_172892:exon15:c.T1703C:p.I568T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	0.9980166	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	38395159	12A2p6	cell line	sgMsh2	38395159	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	291	0	0	NA	exonic	Ttc26	nonsynonymous SNV	Ttc26:NM_153600:exon7:c.A683G:p.N228S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.899498333	1	0.9977284	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	38491287	12A2p6	cell line	sgMsh2	38491287	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	346	0	0	NA	exonic	Ubn2	nonsynonymous SNV	Ubn2:NM_177185:exon14:c.A2929G:p.T977A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.714174556	2	0.9999514	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	38603338	12A2p6	cell line	sgMsh2	38603338	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	77	0	0	NA	exonic	Luc7l2	nonsynonymous SNV	"Luc7l2:NM_001170848:exon8:c.A841T:p.R281W,Luc7l2:NM_001170849:exon8:c.A841T:p.R281W,Luc7l2:NM_001311100:exon9:c.A682T:p.R228W,Luc7l2:NM_138680:exon9:c.A871T:p.R291W,Luc7l2:NM_001311099:exon10:c.A712T:p.R238W,Luc7l2:NM_001331222:exon11:c.A838T:p.R280W,Luc7l2:NM_001331223:exon12:c.A682T:p.R228W"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.696094187	2	0.798036	GAG	nonsynonymous	GAG	8	GAGGAGGA	NA
M8_p20	chr6	38636411	12A2p6	cell line	sgMsh2	38636411	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	65	0	0	NA	exonic	Klrg2	nonsynonymous SNV	Klrg2:NM_001033171:exon1:c.A656G:p.D219G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.881417965	1	0.09777076	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	39465170	12A2p6	cell line	sgMsh2	39465170	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	59	0	0	NA	exonic	Dennd2a	nonsynonymous SNV	Dennd2a:NM_172477:exon17:c.A2765G:p.E922G	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.944699254	1	0.9584866	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	39574305	12A2p6	cell line	sgMsh2	39574305	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.171	39	0	0	NA	exonic	Adck2	nonsynonymous SNV	Adck2:NM_178873:exon1:c.T5C:p.V2A	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.772935754	1	0.6921889	GTG	nonsynonymous	C	5	CCCCC	NA
M8_p20	chr6	40571662	12A2p6	cell line	sgMsh2	40571662	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	333	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.T275C:p.I92T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.899498333	1	0.9988251	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	40572091	12A2p6	cell line	sgMsh2	40572091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	279	0	0	NA	exonic	Olfr460	nonsynonymous SNV	Olfr460:NM_146383:exon1:c.G704A:p.R235K	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.506250318	3	0.9879965	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	40661648	12A2p6	cell line	sgMsh2	40661648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	248	0	0	NA	exonic	Mgam	synonymous SNV	"Mgam:NM_001171003:exon12:c.T1314C:p.P438P,Mgam:NM_001368875:exon12:c.T1314C:p.P438P"	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.8661375	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr6	40897780	12A2p6	cell line	sgMsh2	40897780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	151	0	0	NA	exonic	Prss58	synonymous SNV	Prss58:NM_175020:exon3:c.T126C:p.T42T	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.964476	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr6	41394716	12A2p6	cell line	sgMsh2	41394716	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	749	0	0	NA	exonic	Gm5771	nonsynonymous SNV	Gm5771:NM_001038997:exon2:c.A95G:p.N32S	6qB1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.800056306	2	0.9982107	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	41618291	12A2p6	cell line	sgMsh2	41618291	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	196	0	0	NA	exonic	Ephb6	synonymous SNV	"Ephb6:NM_001146351:exon13:c.T2238C:p.L746L,Ephb6:NM_007680:exon13:c.T2238C:p.L746L"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.70061428	2	0.9965323	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	42286884	12A2p6	cell line	sgMsh2	42286884	G	-	Deletion	Mutect2;Vardict	2	0.157	66	0	0	NA	exonic	Clcn1	frameshift deletion	Clcn1:NM_013491:exon1:c.118delG:p.G41Afs*69	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8_p20	chr6	42357914	12A2p6	cell line	sgMsh2	42357914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	187	0	0	NA	exonic	Zyx	synonymous SNV	"Zyx:NM_001289618:exon9:c.C1560T:p.H520H,Zyx:NM_001289619:exon9:c.C1560T:p.H520H,Zyx:NM_001289617:exon10:c.C1653T:p.H551H,Zyx:NM_011777:exon10:c.C1653T:p.H551H"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.696094187	2	0.9961092	ACG	synonymous	NA	NA	NA	NA
M8_p20	chr6	42677343	12A2p6	cell line	sgMsh2	42677343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	162	0	0	NA	exonic	Tcaf1	synonymous SNV	"Tcaf1:NM_001355768:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355769:exon5:c.A1914G:p.P638P,Tcaf1:NM_029930:exon5:c.A1914G:p.P638P,Tcaf1:NM_001355770:exon6:c.A1914G:p.P638P"	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.727734832	2	0.9633283	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr6	42911526	12A2p6	cell line	sgMsh2	42911526	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	151	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.T2G:p.M1R	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.953739439	1	0.9976247	ATG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr6	42927884	12A2p6	cell line	sgMsh2	42927884	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	144	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.A652C:p.I218L	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	1	0.9734644	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	42956148	12A2p6	cell line	sgMsh2	42956148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	451	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.T649C:p.Y217H	6qB2.1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.542411055	3	0.9388447	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	46421371	12A2p6	cell line	sgMsh2	46421371	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	174	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon12:c.A1805G:p.Y602C	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9810077	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	47803564	12A2p6	cell line	sgMsh2	47803564	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	260	0	0	NA	exonic	Pdia4	synonymous SNV	"Pdia4:NM_009787:exon6:c.G834A:p.Q278Q,Pdia4:NM_001368756:exon7:c.G1008A:p.Q336Q"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.393248015	3	0.999999	ACT	synonymous	NA	NA	NA	NA
M8_p20	chr6	47964376	12A2p6	cell line	sgMsh2	47964376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	167	0	0	NA	exonic	Zfp956	synonymous SNV	Zfp956:NM_178898:exon5:c.A1668G:p.L556L	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.555971332	2	0.6962192	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr6	48024708	12A2p6	cell line	sgMsh2	48024708	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	59	0	0	NA	exonic	Zfp777	nonsynonymous SNV	"Zfp777:NM_001081382:exon6:c.A2579T:p.Y860F,Zfp777:NM_001347139:exon6:c.A2447T:p.Y816F"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.501730226	2	0.57478	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	48063964	12A2p6	cell line	sgMsh2	48063964	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	43	0	0	NA	exonic	Zfp746	synonymous SNV	"Zfp746:NM_001362062:exon6:c.A1743G:p.P581P,Zfp746:NM_001163475:exon7:c.A1827G:p.P609P,Zfp746:NM_001347142:exon7:c.A1824G:p.P608P"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9652154	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	48416192	12A2p6	cell line	sgMsh2	48416192	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	93	0	0	NA	exonic	Krba1	synonymous SNV	"Krba1:NM_001362145:exon16:c.C2901T:p.S967S,Krba1:NM_001347152:exon18:c.C3039T:p.S1013S,Krba1:NM_001347153:exon18:c.C2931T:p.S977S,Krba1:NM_001362144:exon18:c.C2934T:p.S978S,Krba1:NM_133922:exon18:c.C2934T:p.S978S"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.678013819	2	0.9151085	CCC	synonymous	NA	NA	NA	NA
M8_p20	chr6	48452236	12A2p6	cell line	sgMsh2	48452236	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	115	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon10:c.A1307G:p.E436G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.741295109	2	0.8132324	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	48452950	12A2p6	cell line	sgMsh2	48452950	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	102	0	0	NA	exonic	Sspo	synonymous SNV	Sspo:NM_173428:exon12:c.T1662G:p.G554G	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.8500971	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr6	48486414	12A2p6	cell line	sgMsh2	48486414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	51	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon75:c.G11299A:p.V3767I	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9749351	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	48568309	12A2p6	cell line	sgMsh2	48568309	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	111	0	0	NA	exonic	Lrrc61	nonsynonymous SNV	"Lrrc61:NM_001110160:exon2:c.A65C:p.K22T,Lrrc61:NM_177736:exon3:c.A65C:p.K22T"	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9979585	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	49075240	12A2p6	cell line	sgMsh2	49075240	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	264	0	0	NA	exonic	Malsu1	synonymous SNV	Malsu1:NM_029353:exon2:c.T393C:p.A131A	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999968	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr6	50251456	12A2p6	cell line	sgMsh2	50251456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	105	0	0	NA	exonic	Gsdme	nonsynonymous SNV	Gsdme:NM_018769:exon2:c.A31G:p.K11E	6qB2.3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.000887602	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	53817991	12A2p6	cell line	sgMsh2	53817991	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	74	0	0	NA	exonic	Tril	nonsynonymous SNV	Tril:NM_025817:exon1:c.A2245T:p.M749L	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.6981523	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	55872627	12A2p6	cell line	sgMsh2	55872627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	240	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon2:c.T143A:p.M48K	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9918131	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	56174981	12A2p6	cell line	sgMsh2	56174981	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	445	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon5:c.C509T:p.A170V,Pde1c:NM_001159956:exon5:c.C425T:p.A142V,Pde1c:NM_001025568:exon6:c.C536T:p.A179V,Pde1c:NM_001159953:exon6:c.C536T:p.A179V,Pde1c:NM_001159957:exon6:c.C452T:p.A151V,Pde1c:NM_001355475:exon6:c.C536T:p.A179V,Pde1c:NM_001159955:exon7:c.C536T:p.A179V,Pde1c:NM_001159960:exon7:c.C536T:p.A179V,Pde1c:NM_011054:exon7:c.C536T:p.A179V"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.601172253	2	0.9977165	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	56753863	12A2p6	cell line	sgMsh2	56753863	A	-	Deletion	Mutect2;Vardict	2	0.181	195	0	0	NA	exonic	Avl9	frameshift deletion	Avl9:NM_030235:exon15:c.1771delA:p.I593Lfs*71	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr6	57002838	12A2p6	cell line	sgMsh2	57002838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	671	0	0	NA	exonic	Vmn1r6	nonsynonymous SNV	Vmn1r6:NM_134175:exon1:c.T484C:p.Y162H	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.836217043	1	0.7068288	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	57258876	12A2p6	cell line	sgMsh2	57258876	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	385	0	0	NA	exonic	Vmn1r15	nonsynonymous SNV	Vmn1r15:NM_053236:exon1:c.T728C:p.V243A	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.922098794	1	0.9999475	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	57600007	12A2p6	cell line	sgMsh2	57600007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	240	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon5:c.T704C:p.L235P	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.497210134	3	0.9863431	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	57658056	12A2p6	cell line	sgMsh2	57658056	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	234	0	0	NA	exonic	Herc6	synonymous SNV	Herc6:NM_025992:exon18:c.A2256C:p.G752G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.858817504	1	0.9359851	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr6	57662763	12A2p6	cell line	sgMsh2	57662763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	292	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon23:c.G2861A:p.R954Q	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	0.994420268	1	0.9999985	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	57726446	12A2p6	cell line	sgMsh2	57726446	A	-	Deletion	Mutect2;Vardict	2	0.143	149	0	0	NA	exonic	Lancl2	frameshift deletion	Lancl2:NM_133737:exon6:c.855delA:p.T286Pfs*3	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.646373174	NA	NA	TAA	frameshift	NA	NA	NA	-1
M8_p20	chr6	57726451	12A2p6	cell line	sgMsh2	57726451	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.152	156	0	0	NA	exonic	Lancl2	nonsynonymous SNV	Lancl2:NM_133737:exon6:c.A860G:p.E287G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.687054003	2	0.9911037	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	57926427	12A2p6	cell line	sgMsh2	57926427	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	319	0	0	NA	exonic	Vmn1r23	nonsynonymous SNV	Vmn1r23:NM_134179:exon1:c.A365G:p.Y122C	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.822656767	1	0.5178469	GTA	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr6	58906905	12A2p6	cell line	sgMsh2	58906905	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.366	11	0	0	NA	exonic	Nap1l5	synonymous SNV	Nap1l5:NM_021432:exon1:c.C63T:p.G21G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.8740556	CGC	synonymous	NA	NA	NA	NA
M8_p20	chr6	59355014	12A2p6	cell line	sgMsh2	59355014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	217	0	0	NA	exonic	Gprin3	nonsynonymous SNV	Gprin3:NM_183183:exon2:c.A307G:p.S103G	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.727734832	2	0.9925468	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	60944815	12A2p6	cell line	sgMsh2	60944815	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	152	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon1:c.C255A:p.P85P,Mmrn1:NM_027613:exon1:c.C255A:p.P85P"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.714174556	2	0.9710482	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr6	60977328	12A2p6	cell line	sgMsh2	60977328	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	230	0	0	NA	exonic	Mmrn1	synonymous SNV	"Mmrn1:NM_001163507:exon6:c.A2592G:p.K864K,Mmrn1:NM_027613:exon6:c.A2592G:p.K864K"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.705134372	2	0.9986936	AAG	synonymous	A	5	AAAAA	NA
M8_p20	chr6	61570680	12A2p6	cell line	sgMsh2	61570680	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	118	0	0	NA	exonic	Ccser1	nonsynonymous SNV	"Ccser1:NM_001164316:exon6:c.C1726A:p.L576M,Ccser1:NM_183310:exon6:c.C1726A:p.L576M"	6qB3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.8428767	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	66536055	12A2p6	cell line	sgMsh2	66536055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	407	0	0	NA	exonic	Mad2l1	synonymous SNV	"Mad2l1:NM_001355624:exon2:c.T171C:p.T57T,Mad2l1:NM_019499:exon2:c.T171C:p.T57T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.533370871	3	0.9714869	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	67281808	12A2p6	cell line	sgMsh2	67281808	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	132	0	0	NA	exonic	Serbp1	nonsynonymous SNV	"Serbp1:NM_001113564:exon7:c.G1136A:p.S379N,Serbp1:NM_001113565:exon7:c.G1109A:p.S370N,Serbp1:NM_001113566:exon7:c.G1091A:p.S364N,Serbp1:NM_025814:exon7:c.G1154A:p.S385N"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.72321474	2	0.9268066	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	70913430	12A2p6	cell line	sgMsh2	70913430	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	139	0	0	NA	exonic	Tex37	nonsynonymous SNV	"Tex37:NM_001355766:exon4:c.T374C:p.L125P,Tex37:NM_028825:exon4:c.T377C:p.L126P"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.854297412	1	0.8850264	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	71373928	12A2p6	cell line	sgMsh2	71373928	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	306	0	0	NA	exonic	Cd8a	nonsynonymous SNV	"Cd8a:NM_001081110:exon1:c.T376C:p.Y126H,Cd8a:NM_009857:exon1:c.T376C:p.Y126H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	3	0.9999935	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	71561046	12A2p6	cell line	sgMsh2	71561046	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	174	0	0	NA	exonic	Chmp3	nonsynonymous SNV	"Chmp3:NM_001355674:exon3:c.T178A:p.S60T,Chmp3:NM_001355675:exon3:c.T178A:p.S60T,Chmp3:NM_001361405:exon3:c.T256A:p.S86T,Chmp3:NM_025783:exon3:c.T256A:p.S86T"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.781975938	2	0.7574049	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	71604090	12A2p6	cell line	sgMsh2	71604090	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	317	0	0	NA	exonic	Kdm3a	nonsynonymous SNV	"Kdm3a:NM_001362201:exon3:c.T307C:p.Y103H,Kdm3a:NM_001362200:exon12:c.T1783C:p.Y595H,Kdm3a:NM_173001:exon12:c.T1783C:p.Y595H,Kdm3a:NM_001038695:exon13:c.T1783C:p.Y595H"	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.768415662	2	0.9884179	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	71917754	12A2p6	cell line	sgMsh2	71917754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	131	0	0	NA	exonic	Polr1a	nonsynonymous SNV	Polr1a:NM_009088:exon4:c.A445G:p.T149A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.759375477	2	0.7796124	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	72223917	12A2p6	cell line	sgMsh2	72223917	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	121	0	0	NA	exonic	Atoh8	nonsynonymous SNV	Atoh8:NM_153778:exon2:c.A788G:p.Y263C	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.836217043	1	0.8015667	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	72515320	12A2p6	cell line	sgMsh2	72515320	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	85	0	0	NA	exonic	Sh2d6	nonsynonymous SNV	Sh2d6:NM_001374030:exon11:c.T542C:p.V181A	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.741295109	2	0.000963707	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	73155357	12A2p6	cell line	sgMsh2	73155357	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	118	0	0	NA	exonic	Dnah6	nonsynonymous SNV	Dnah6:NM_001164669:exon22:c.C3361T:p.P1121S	6qC1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.904018425	1	0.9708405	GGC	nonsynonymous	GCAG	8	GCAGGCAG	NA
M8_p20	chr6	80022742	12A2p6	cell line	sgMsh2	80022742	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	96	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001282102:exon2:c.C1136A:p.P379H,Lrrtm4:NM_001347261:exon2:c.C1133A:p.P378H,Lrrtm4:NM_178731:exon2:c.C1133A:p.P378H"	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9961633	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	81958058	12A2p6	cell line	sgMsh2	81958058	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	75	0	0	NA	exonic	Gcfc2	nonsynonymous SNV	Gcfc2:NM_177884:exon17:c.G2297T:p.S766I	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9907462	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	82760171	12A2p6	cell line	sgMsh2	82760171	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	110	0	0	NA	exonic	Hk2	synonymous SNV	Hk2:NM_013820:exon2:c.T159C:p.A53A	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.673493727	2	0.9607017	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr6	82937102	12A2p6	cell line	sgMsh2	82937102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	141	0	0	NA	exonic	Sema4f	nonsynonymous SNV	Sema4f:NM_011350:exon2:c.T274C:p.F92L	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.592132069	2	0.9351003	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	83048100	12A2p6	cell line	sgMsh2	83048100	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	237	0	0	NA	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon5:c.A808G:p.T270A	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.864288	CAC	nonsynonymous	CAC	8	CACCACCA	NA
M8_p20	chr6	83161012	12A2p6	cell line	sgMsh2	83161012	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	158	0	0	NA	exonic	1700003E16Rik	nonsynonymous SNV	1700003E16Rik:NM_027948:exon2:c.A119C:p.N40T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9766187	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	83758342	12A2p6	cell line	sgMsh2	83758342	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	101	0	0	NA	exonic	Atp6v1b1	nonsynonymous SNV	Atp6v1b1:NM_134157:exon14:c.A1391C:p.N464T	6qC3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.546931147	2	0.7049739	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	86389136	12A2p6	cell line	sgMsh2	86389136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	356	0	0	NA	exonic	Pcyox1	synonymous SNV	"Pcyox1:NM_001355687:exon5:c.T888C:p.F296F,Pcyox1:NM_025823:exon6:c.T1095C:p.F365F"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.795536214	2	0.9332312	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr6	87653819	12A2p6	cell line	sgMsh2	87653819	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	208	0	0	NA	exonic	Aplf	synonymous SNV	"Aplf:NM_001170489:exon6:c.T696C:p.H232H,Aplf:NM_001372332:exon6:c.T696C:p.H232H,Aplf:NM_024251:exon6:c.T633C:p.H211H"	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.641853082	2	0.9985388	CAT	synonymous	CCATG	10	CCATGCCATG	NA
M8_p20	chr6	87936160	12A2p6	cell line	sgMsh2	87936160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	140	0	0	NA	exonic	Hmces	nonsynonymous SNV	Hmces:NM_173737:exon7:c.T896C:p.V299A	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.777455846	2	8.08E-06	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	87980790	12A2p6	cell line	sgMsh2	87980790	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	76	0	0	NA	exonic	H1f10	stoploss	H1f10:NM_198622:exon1:c.A567C:p.X189C	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	1	8.67E-05	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	88512166	12A2p6	cell line	sgMsh2	88512166	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.109	91	0	0	NA	exonic	Sec61a1	synonymous SNV	Sec61a1:NM_016906:exon7:c.G552A:p.A184A	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.492690042	3	0.6663588	TCG	synonymous	NA	NA	NA	NA
M8_p20	chr6	91017365	12A2p6	cell line	sgMsh2	91017365	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	82	0	0	NA	exonic	Nup210	nonsynonymous SNV	Nup210:NM_018815:exon37:c.G5350A:p.A1784T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9930959	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	91169470	12A2p6	cell line	sgMsh2	91169470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	512	0	0	NA	exonic	Hdac11	nonsynonymous SNV	Hdac11:NM_144919:exon8:c.C628A:p.P210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.542411055	3	0.9655511	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	91892900	12A2p6	cell line	sgMsh2	91892900	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	189	0	0	NA	exonic	Ccdc174	nonsynonymous SNV	Ccdc174:NM_172730:exon7:c.T629C:p.M210T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999238	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	91987311	12A2p6	cell line	sgMsh2	91987311	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	83	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.A524G:p.D175G	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.87237778	1	0.09779259	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	92890120	12A2p6	cell line	sgMsh2	92890120	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	264	0	0	NA	exonic	Adamts9	nonsynonymous SNV	Adamts9:NM_175314:exon13:c.A2027C:p.K676T	6qD1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.894978241	1	0.9952569	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	97184805	12A2p6	cell line	sgMsh2	97184805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	247	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon17:c.T1322C:p.V441A,Uba3:NM_001301858:exon17:c.T1283C:p.V428A,Uba3:NM_001301857:exon18:c.T1301C:p.V434A,Uba3:NM_011666:exon18:c.T1364C:p.V455A"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.718694648	2	0.998281	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	97993315	12A2p6	cell line	sgMsh2	97993315	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	124	0	0	NA	exonic	Mitf	synonymous SNV	"Mitf:NM_008601:exon2:c.T222G:p.P74P,Mitf:NM_001113198:exon3:c.T543G:p.P181P,Mitf:NM_001178049:exon3:c.T495G:p.P165P"	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.528850779	3	8.54E-05	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr6	100863136	12A2p6	cell line	sgMsh2	100863136	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	473	0	0	NA	exonic	Ppp4r2	nonsynonymous SNV	Ppp4r2:NM_182939:exon5:c.T395G:p.V132G	6qD3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.682533911	2	5.43E-09	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	106489627	12A2p6	cell line	sgMsh2	106489627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	197	0	0	NA	exonic	Cntn4	synonymous SNV	"Cntn4:NM_001364565:exon7:c.T489A:p.P163P,Cntn4:NM_001109751:exon8:c.T489A:p.P163P,Cntn4:NM_001364566:exon8:c.T489A:p.P163P,Cntn4:NM_001109749:exon9:c.T489A:p.P163P,Cntn4:NM_173004:exon9:c.T489A:p.P163P"	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.619252621	2	0.9921218	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr6	107567567	12A2p6	cell line	sgMsh2	107567567	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	135	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A325G:p.N109D	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9992573	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	107567574	12A2p6	cell line	sgMsh2	107567574	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	145	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.A332G:p.K111R	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9995128	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	108380923	12A2p6	cell line	sgMsh2	108380923	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	90	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon17:c.A1562T:p.K521M	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.917578702	1	0.9662074	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	108399280	12A2p6	cell line	sgMsh2	108399280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	156	0	0	NA	exonic	Itpr1	nonsynonymous SNV	Itpr1:NM_010585:exon31:c.C3703T:p.R1235W	6qE1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	2	0.9875839	GCG	nonsynonymous	GGCT	8	GGCTGGCT	NA
M8_p20	chr6	110646126	12A2p6	cell line	sgMsh2	110646126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	108	0	0	NA	exonic	Grm7	nonsynonymous SNV	"Grm7:NM_001346640:exon1:c.G259A:p.D87N,Grm7:NM_177328:exon1:c.G259A:p.D87N"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.578571792	2	0.8745574	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	112644629	12A2p6	cell line	sgMsh2	112644629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	235	0	0	NA	exonic	Rad18	synonymous SNV	"Rad18:NM_001381931:exon11:c.T1389C:p.C463C,Rad18:NM_021385:exon11:c.T1389C:p.C463C,Rad18:NM_001167730:exon12:c.T1467C:p.C489C,Rad18:NM_001381932:exon12:c.T1467C:p.C489C,Rad18:NM_001381933:exon12:c.T993C:p.C331C"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.429408752	3	0.9999242	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr6	113384119	12A2p6	cell line	sgMsh2	113384119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	232	0	0	NA	exonic	Arpc4	nonsynonymous SNV	"Arpc4:NM_001170485:exon2:c.T41C:p.M14T,Arpc4:NM_001170486:exon3:c.T2C:p.M1T,Arpc4:NM_026552:exon4:c.T272C:p.M91T"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.714174556	2	0.9978951	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	113470004	12A2p6	cell line	sgMsh2	113470004	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.111	54	0	0	NA	exonic	Il17re	nonsynonymous SNV	"Il17re:NM_001034029:exon14:c.T1172C:p.L391P,Il17re:NM_001362204:exon14:c.T1637C:p.L546P,Il17re:NM_001362205:exon14:c.T1715C:p.L572P,Il17re:NM_145826:exon15:c.T1775C:p.L592P,Il17re:NM_001034031:exon16:c.T1172C:p.L391P"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.501730226	2	0.5974588	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	113549373	12A2p6	cell line	sgMsh2	113549373	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	573	0	0	NA	exonic	Fancd2	synonymous SNV	"Fancd2:NM_001033244:exon13:c.T1056C:p.I352I,Fancd2:NM_001347350:exon13:c.T1056C:p.I352I"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.705134372	2	7.82E-09	TTA	synonymous	NA	NA	NA	NA
M8_p20	chr6	113578387	12A2p6	cell line	sgMsh2	113578387	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	174	0	0	NA	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon34:c.T3356A:p.F1119Y,Fancd2:NM_001347350:exon34:c.T3356A:p.F1119Y"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.881417965	1	0.9682357	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	113704229	12A2p6	cell line	sgMsh2	113704229	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	333	0	0	NA	exonic	Tatdn2	nonsynonymous SNV	"Tatdn2:NM_001033463:exon4:c.T1039C:p.Y347H,Tatdn2:NM_001347356:exon4:c.T1222C:p.Y408H"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999998	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	114302629	12A2p6	cell line	sgMsh2	114302629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	135	0	0	NA	exonic	Slc6a1	nonsynonymous SNV	Slc6a1:NM_178703:exon4:c.A368G:p.K123R	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.777455846	2	0.6694238	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	115236042	12A2p6	cell line	sgMsh2	115236042	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	192	0	0	NA	exonic	Syn2	nonsynonymous SNV	"Syn2:NM_001111015:exon2:c.C409T:p.L137F,Syn2:NM_013681:exon2:c.C409T:p.L137F"	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.610212437	2	0.9849175	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	116246161	12A2p6	cell line	sgMsh2	116246161	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	140	0	0	NA	exonic	Washc2	synonymous SNV	Washc2:NM_026585:exon22:c.T2184C:p.S728S	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.673493727	2	0.988739	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	116702006	12A2p6	cell line	sgMsh2	116702006	C	-	Deletion	Mutect2;Vardict	2	0.128	81	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.108delG:p.R37Gfs*76	6qE3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.578571792	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr6	118465880	12A2p6	cell line	sgMsh2	118465880	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	328	0	0	NA	exonic	Zfp9	nonsynonymous SNV	Zfp9:NM_011763:exon5:c.A254G:p.H85R	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.48816995	3	0.9994315	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	118559284	12A2p6	cell line	sgMsh2	118559284	G	-	Deletion	Mutect2;Vardict	2	0.141	90	0	0	NA	exonic	Ankrd26	frameshift deletion	Ankrd26:NM_001081112:exon2:c.347delC:p.T116Rfs*26	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.63733299	NA	NA	CGT	frameshift	NA	NA	NA	-1
M8_p20	chr6	118734925	12A2p6	cell line	sgMsh2	118734925	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	135	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon5:c.A524T:p.D175V,Cacna1c:NM_001159533:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159534:exon9:c.A1316T:p.D439V,Cacna1c:NM_001159535:exon9:c.A1316T:p.D439V,Cacna1c:NM_001255997:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255998:exon9:c.A1406T:p.D469V,Cacna1c:NM_001255999:exon9:c.A1406T:p.D469V,Cacna1c:NM_001256000:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256001:exon9:c.A1316T:p.D439V,Cacna1c:NM_001256002:exon9:c.A1316T:p.D439V,Cacna1c:NM_009781:exon9:c.A1406T:p.D469V"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	0.9895686	GTC	nonsynonymous	TCCAG	10	TCCAGTCCAG	NA
M8_p20	chr6	120389037	12A2p6	cell line	sgMsh2	120389037	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	341	0	0	NA	exonic	Kdm5a	synonymous SNV	Kdm5a:NM_145997:exon9:c.T1137C:p.N379N	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.732254925	2	0.9997097	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr6	120734610	12A2p6	cell line	sgMsh2	120734610	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	112	0	0	NA	exonic	Cecr2	nonsynonymous SNV	"Cecr2:NM_001128151:exon5:c.A598G:p.R200G,Cecr2:NM_001368706:exon5:c.A598G:p.R200G"	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.623772713	2	0.9677012	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	121840239	12A2p6	cell line	sgMsh2	121840239	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	322	0	0	NA	exonic	Mug1	nonsynonymous SNV	Mug1:NM_008645:exon2:c.T266C:p.F89S	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.583091884	2	0.9491183	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	122459261	12A2p6	cell line	sgMsh2	122459261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon5:c.T528C:p.H176H	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.687054003	2	0.9996789	AAT	synonymous	NA	NA	NA	NA
M8_p20	chr6	122609795	12A2p6	cell line	sgMsh2	122609795	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.117	97	0	0	NA	exonic	Gdf3	nonsynonymous SNV	Gdf3:NM_008108:exon1:c.G172A:p.A58T	6qF1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.528850779	2	0.000932987	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	123713078	12A2p6	cell line	sgMsh2	123713078	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	711	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon3:c.T912G:p.S304S	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	2.23E-09	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	123713365	12A2p6	cell line	sgMsh2	123713365	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	875	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.C1199A:p.P400H	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.605692345	2	0.999991	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	123742005	12A2p6	cell line	sgMsh2	123742005	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	396	0	0	NA	exonic	Vmn2r23	synonymous SNV	Vmn2r23:NM_001104638:exon6:c.A2316T:p.L772L	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.687054003	2	0.9999994	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr6	123815817	12A2p6	cell line	sgMsh2	123815817	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	855	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon6:c.T2102C:p.M701T	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.709654464	2	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	124307173	12A2p6	cell line	sgMsh2	124307173	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	76	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon3:c.A303G:p.G101G,Cd163:NM_053094:exon3:c.A303G:p.G101G"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.885938057	1	0.9193237	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr6	124317988	12A2p6	cell line	sgMsh2	124317988	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	224	0	0	NA	exonic	Cd163	synonymous SNV	"Cd163:NM_001170395:exon8:c.G2010A:p.T670T,Cd163:NM_053094:exon8:c.G2010A:p.T670T"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.931138978	1	0.9989908	CGT	synonymous	NA	NA	NA	NA
M8_p20	chr6	124728965	12A2p6	cell line	sgMsh2	124728965	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	62	0	0	NA	exonic	Ptpn6	nonsynonymous SNV	"Ptpn6:NM_001077705:exon4:c.A338G:p.Y113C,Ptpn6:NM_013545:exon4:c.A332G:p.Y111C"	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.904018425	1	0.9281142	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	124747592	12A2p6	cell line	sgMsh2	124747592	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	46	0	0	NA	exonic	Atn1	nonsynonymous SNV	Atn1:NM_007881:exon5:c.G677T:p.S226I	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.845257228	1	0.8282567	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	124908510	12A2p6	cell line	sgMsh2	124908510	G	-	Deletion	Mutect2;Vardict	2	0.097	81	0	0	NA	exonic	Lag3	frameshift deletion	Lag3:NM_008479:exon5:c.906delC:p.V303Wfs*44	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.438448936	NA	NA	CGG	frameshift	NA	NA	NA	-1
M8_p20	chr6	125170757	12A2p6	cell line	sgMsh2	125170757	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	151	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon27:c.T3512C:p.V1171A	6qF2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.750335293	2	0.8855643	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	125626311	12A2p6	cell line	sgMsh2	125626311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	177	0	0	NA	exonic	Vwf	nonsynonymous SNV	Vwf:NM_011708:exon20:c.T2623C:p.Y875H	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.750335293	2	0.9345398	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	125980155	12A2p6	cell line	sgMsh2	125980155	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	352	0	0	NA	exonic	Ano2	nonsynonymous SNV	"Ano2:NM_001364563:exon16:c.A1688G:p.K563R,Ano2:NM_001364562:exon17:c.A1874G:p.K625R,Ano2:NM_153589:exon18:c.A1886G:p.K629R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.619252621	2	0.999324	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	126102066	12A2p6	cell line	sgMsh2	126102066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	138	0	0	NA	exonic	Ntf3	nonsynonymous SNV	"Ntf3:NM_001164035:exon2:c.A476G:p.H159R,Ntf3:NM_008742:exon2:c.A437G:p.H146R,Ntf3:NM_001164034:exon3:c.A476G:p.H159R"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.962779623	1	0.9974742	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	126643196	12A2p6	cell line	sgMsh2	126643196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	216	0	0	NA	exonic	Kcna1	nonsynonymous SNV	Kcna1:NM_010595:exon2:c.A160G:p.T54A	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.650893266	2	0.9993097	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	126892153	12A2p6	cell line	sgMsh2	126892153	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	212	0	0	NA	exonic	Dyrk4	nonsynonymous SNV	Dyrk4:NM_207210:exon7:c.A695G:p.Q232R	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.682533911	2	0.9992328	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	128434441	12A2p6	cell line	sgMsh2	128434441	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	76	0	0	NA	exonic	Fkbp4	nonsynonymous SNV	Fkbp4:NM_010219:exon5:c.A535G:p.K179E	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.655413358	2	0.09968833	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	129419614	12A2p6	cell line	sgMsh2	129419614	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	253	0	0	NA	exonic	Clec9a	nonsynonymous SNV	"Clec9a:NM_001205364:exon4:c.T443C:p.I148T,Clec9a:NM_172732:exon4:c.T446C:p.I149T,Clec9a:NM_001205363:exon5:c.T524C:p.I175T"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.78649603	2	0.8849071	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	129768140	12A2p6	cell line	sgMsh2	129768140	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	327	0	0	NA	exonic	Klrh1	synonymous SNV	"Klrh1:NM_001014997:exon6:c.T492C:p.S164S,Klrh1:NM_001356340:exon6:c.T492C:p.S164S"	6qF3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.65993345	2	0.9999874	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr6	132595972	12A2p6	cell line	sgMsh2	132595972	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	177	0	0	NA	exonic	Prp2	synonymous SNV	Prp2:NM_031499:exon1:c.C27T:p.A9A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	0.971819807	1	0.9995303	CCC	synonymous	NA	NA	NA	NA
M8_p20	chr6	132856196	12A2p6	cell line	sgMsh2	132856196	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	281	0	0	NA	exonic	Tas2r116	synonymous SNV	Tas2r116:NM_053212:exon1:c.T759C:p.S253S	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9999984	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr6	134248496	12A2p6	cell line	sgMsh2	134248496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	62	0	0	NA	exonic	Etv6	nonsynonymous SNV	"Etv6:NM_007961:exon5:c.A689G:p.N230S,Etv6:NM_001303102:exon6:c.A560G:p.N187S"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	1	0.9840939	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	134451069	12A2p6	cell line	sgMsh2	134451069	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	104	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4559G:p.Y1520C	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.84977732	1	0.8561119	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	134451076	12A2p6	cell line	sgMsh2	134451076	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	99	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon23:c.A4552G:p.R1518G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.863337596	1	0.8931817	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	134484391	12A2p6	cell line	sgMsh2	134484391	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	226	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon10:c.A2102C:p.E701A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.465569489	3	0.9982089	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	134520435	12A2p6	cell line	sgMsh2	134520435	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	262	0	0	NA	exonic	Lrp6	nonsynonymous SNV	Lrp6:NM_008514:exon3:c.T608G:p.L203R	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.908538517	1	0.9980783	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	134644391	12A2p6	cell line	sgMsh2	134644391	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	244	0	0	NA	exonic	Borcs5	nonsynonymous SNV	"Borcs5:NM_001170479:exon2:c.T124C:p.S42P,Borcs5:NM_026371:exon2:c.T121C:p.S41P"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.664453543	2	0.9998485	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	136043891	12A2p6	cell line	sgMsh2	136043891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	190	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon4:c.G411T:p.K137N,Grin2b:NM_008171:exon4:c.G411T:p.K137N"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.72321474	2	0.9868828	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	136329362	12A2p6	cell line	sgMsh2	136329362	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.137	164	0	0	NA	exonic	Eif4a3l1	nonsynonymous SNV	Eif4a3l1:NM_001142734:exon2:c.A820G:p.T274A	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.619252621	2	0.9865375	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	136760662	12A2p6	cell line	sgMsh2	136760662	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	197	0	0	NA	exonic	Gucy2c	nonsynonymous SNV	"Gucy2c:NM_001127318:exon7:c.T940C:p.F314L,Gucy2c:NM_145067:exon7:c.T940C:p.F314L"	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.63733299	2	0.9974859	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	136921764	12A2p6	cell line	sgMsh2	136921764	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.201	223	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon2:c.G160A:p.A54T	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.908538517	1	0.9961146	GCG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
M8_p20	chr6	137748709	12A2p6	cell line	sgMsh2	137748709	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	456	0	0	NA	exonic	Strap	synonymous SNV	Strap:NM_011499:exon8:c.T798C:p.G266G	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.501730226	3	0.9998753	GTC	synonymous	NA	NA	NA	NA
M8_p20	chr6	138012108	12A2p6	cell line	sgMsh2	138012108	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.162	116	0	0	NA	exonic	Slc15a5	nonsynonymous SNV	Slc15a5:NM_177787:exon7:c.A1411G:p.M471V	6qG1	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.732254925	2	0.8547365	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	139882067	12A2p6	cell line	sgMsh2	139882067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	218	0	0	NA	exonic	Pik3c2g	synonymous SNV	Pik3c2g:NM_011084:exon9:c.T1083C:p.H361H	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.78649603	2	0.8247287	ATT	synonymous	NA	NA	NA	NA
M8_p20	chr6	141532679	12A2p6	cell line	sgMsh2	141532679	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	139	0	0	NA	exonic	Slco1c1	nonsynonymous SNV	"Slco1c1:NM_001177772:exon3:c.A167G:p.K56R,Slco1c1:NM_021471:exon3:c.A167G:p.K56R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.587611976	2	0.9202314	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	141546897	12A2p6	cell line	sgMsh2	141546897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	153	0	0	NA	exonic	Slco1c1	synonymous SNV	"Slco1c1:NM_001177772:exon8:c.A1005G:p.K335K,Slco1c1:NM_021471:exon8:c.A1005G:p.K335K"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.949219347	1	0.9973171	AAA	synonymous	NA	NA	NA	NA
M8_p20	chr6	142253236	12A2p6	cell line	sgMsh2	142253236	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	444	0	0	NA	exonic	Slco1a5	nonsynonymous SNV	"Slco1a5:NM_001267707:exon8:c.A702G:p.I234M,Slco1a5:NM_130861:exon8:c.A702G:p.I234M"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.546931147	3	0.8797911	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	142367503	12A2p6	cell line	sgMsh2	142367503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	347	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon9:c.A1076G:p.Q359R,Recql:NM_001204907:exon9:c.A1076G:p.Q359R,Recql:NM_001355511:exon9:c.A1076G:p.Q359R,Recql:NM_023042:exon9:c.A1076G:p.Q359R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.818136675	2	0.6148585	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	142369432	12A2p6	cell line	sgMsh2	142369432	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	139	0	0	NA	exonic	Recql	nonsynonymous SNV	"Recql:NM_001204906:exon7:c.G726T:p.K242N,Recql:NM_001204907:exon7:c.G726T:p.K242N,Recql:NM_001355511:exon7:c.G726T:p.K242N,Recql:NM_023042:exon7:c.G726T:p.K242N"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.768415662	2	0.7506416	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	142694559	12A2p6	cell line	sgMsh2	142694559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	350	0	0	NA	exonic	Abcc9	nonsynonymous SNV	"Abcc9:NM_001044720:exon4:c.G202A:p.G68R,Abcc9:NM_001310143:exon4:c.G202A:p.G68R,Abcc9:NM_011511:exon4:c.G202A:p.G68R,Abcc9:NM_021041:exon4:c.G202A:p.G68R,Abcc9:NM_021042:exon4:c.G202A:p.G68R"	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.628292806	2	0.9997579	CCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	142771330	12A2p6	cell line	sgMsh2	142771330	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	242	0	0	NA	exonic	Cmas	nonsynonymous SNV	Cmas:NM_009908:exon6:c.G947A:p.G316D	6qG2	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.858817504	1	0.938346	GGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	143038896	12A2p6	cell line	sgMsh2	143038896	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	272	0	0	NA	exonic	C2cd5	frameshift deletion	"C2cd5:NM_001286578:exon13:c.1070delT:p.L357Pfs*3,C2cd5:NM_001109688:exon14:c.1637delT:p.L546Pfs*3,C2cd5:NM_001362115:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029081:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_029897:exon14:c.1664delT:p.L555Pfs*3,C2cd5:NM_001362114:exon15:c.1703delT:p.L568Pfs*3,C2cd5:NM_001362117:exon15:c.1670delT:p.L557Pfs*3,C2cd5:NM_001362118:exon15:c.809delT:p.L270Pfs*3,C2cd5:NM_001362113:exon16:c.1736delT:p.L579Pfs*3,C2cd5:NM_001362116:exon16:c.1736delT:p.L579Pfs*3"	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	2	1	NA	NA	GAG	frameshift	TTTGAG	12	TTTGAGTTTGAG	-1
M8_p20	chr6	145205280	12A2p6	cell line	sgMsh2	145205280	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	139	0	0	NA	exonic	Casc1	nonsynonymous SNV	Casc1:NM_177222:exon3:c.T65G:p.L22R	6qG3	chr6-3373003-148425959	6	4	2	0.9	4.068082914	NA	1	0.777455846	2	8.61E-06	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	148930561	12A2p6	cell line	sgMsh2	148930561	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.208	324	0	0	NA	exonic	Sinhcaf	frameshift deletion	"Sinhcaf:NM_001355645:exon3:c.218delA:p.N73Tfs*4,Sinhcaf:NM_019643:exon3:c.218delA:p.N73Tfs*4"	6qG3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr6	149326242	12A2p6	cell line	sgMsh2	149326242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	396	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A785G:p.Y262C,Resf1:NM_026054:exon3:c.A785G:p.Y262C,Resf1:NM_001289661:exon4:c.A785G:p.Y262C"	6qG3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr6	149326928	12A2p6	cell line	sgMsh2	149326928	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.173	263	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.A1471G:p.T491A,Resf1:NM_026054:exon3:c.A1471G:p.T491A,Resf1:NM_001289661:exon4:c.A1471G:p.T491A"	6qG3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	3653383	12A2p6	cell line	sgMsh2	3653383	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	184	0	0	NA	exonic	Cnot3	nonsynonymous SNV	Cnot3:NM_146176:exon8:c.G667A:p.E223K	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999059	CGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	3663769	12A2p6	cell line	sgMsh2	3663769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	43	0	0	NA	exonic	Leng1	synonymous SNV	Leng1:NM_027203:exon2:c.T225G:p.P75P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9652154	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	3667541	12A2p6	cell line	sgMsh2	3667541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	37	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon11:c.T1550C:p.L517P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9556195	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	3676640	12A2p6	cell line	sgMsh2	3676640	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	134	0	0	NA	exonic	Tmc4	nonsynonymous SNV	Tmc4:NM_181820:exon2:c.T184G:p.F62V	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992253	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	3842009	12A2p6	cell line	sgMsh2	3842009	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.397	206	0	0	NA	exonic	Pira2;Pira4;Pira7	nonsynonymous SNV	"Pira2:NM_001379689:exon6:c.A1246G:p.I416V,Pira2:NM_011089:exon6:c.A1249G:p.I417V,Pira4:NM_011091:exon6:c.A1249G:p.I417V,Pira7:NM_011094:exon6:c.A1249G:p.I417V"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999628	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	4282891	12A2p6	cell line	sgMsh2	4282891	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	487	0	0	NA	exonic	Pira6	synonymous SNV	Pira6:NM_008848:exon9:c.C1866A:p.S622S	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	2	1	1	1.26E-09	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr7	4469203	12A2p6	cell line	sgMsh2	4469203	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.218	249	0	0	NA	exonic	Eps8l1	frameshift deletion	"Eps8l1:NM_001290416:exon4:c.66delA:p.K23Nfs*55,Eps8l1:NM_001374622:exon4:c.249delA:p.K84Nfs*55,Eps8l1:NM_026146:exon4:c.66delA:p.K23Nfs*55"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	0.985380084	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8_p20	chr7	4471239	12A2p6	cell line	sgMsh2	4471239	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.627	6	0	0	NA	exonic	Eps8l1	nonsynonymous SNV	"Eps8l1:NM_001290416:exon8:c.G525T:p.E175D,Eps8l1:NM_001374622:exon8:c.G708T:p.E236D,Eps8l1:NM_026146:exon8:c.G525T:p.E175D"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	2	1	1	0.8441801	AGG	nonsynonymous	AGG	8	AGGAGGAG	NA
M8_p20	chr7	4943905	12A2p6	cell line	sgMsh2	4943905	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	106	0	0	NA	exonic	Ssc5d	nonsynonymous SNV	Ssc5d:NM_173008:exon14:c.T3257C:p.L1086P	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	0.78649603	1	0.5056169	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	4994529	12A2p6	cell line	sgMsh2	4994529	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.499	7	0	0	NA	exonic	Zfp579	nonsynonymous SNV	Zfp579:NM_026741:exon2:c.A382G:p.S128G	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	2	1	1	0.009196149	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	5009118	12A2p6	cell line	sgMsh2	5009118	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	56	0	0	NA	exonic	Fiz1	nonsynonymous SNV	"Fiz1:NM_001110328:exon3:c.C400T:p.R134W,Fiz1:NM_001110329:exon3:c.C400T:p.R134W,Fiz1:NM_001110330:exon3:c.C400T:p.R134W,Fiz1:NM_001360241:exon3:c.C400T:p.R134W,Fiz1:NM_001360242:exon3:c.C400T:p.R134W,Fiz1:NM_001360243:exon3:c.C400T:p.R134W,Fiz1:NM_011813:exon3:c.C400T:p.R134W"	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9796055	CGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	5125493	12A2p6	cell line	sgMsh2	5125493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	355	0	0	NA	exonic	Rasl2-9	nonsynonymous SNV	Rasl2-9:NM_009028:exon1:c.A437G:p.Y146C	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.9201205	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	5319204	12A2p6	cell line	sgMsh2	5319204	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	202	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon8:c.A2443G:p.K815E	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9998782	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	5884228	12A2p6	cell line	sgMsh2	5884228	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	565	0	0	NA	exonic	Vmn1r64	synonymous SNV	Vmn1r64:NM_207544:exon1:c.C315T:p.C105C	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-09	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr7	6060603	12A2p6	cell line	sgMsh2	6060603	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.255	103	0	0	NA	exonic	Nlrp4c	frameshift deletion	Nlrp4c:NM_031389:exon2:c.9delT:p.S6Lfs*8	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
M8_p20	chr7	6461136	12A2p6	cell line	sgMsh2	6461136	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	374	0	0	NA	exonic	Olfr1336	nonsynonymous SNV	Olfr1336:NM_146915:exon1:c.T626C:p.V209A	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	3.21E-08	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	6688672	12A2p6	cell line	sgMsh2	6688672	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	156	0	0	NA	exonic	Zim1	nonsynonymous SNV	Zim1:NM_011769:exon4:c.A1G:p.M1V	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996936	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	6708763	12A2p6	cell line	sgMsh2	6708763	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	178	0	0	NA	exonic	Peg3	synonymous SNV	Peg3:NM_008817:exon9:c.G3459A:p.G1153G	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998788	CCC	synonymous	NA	NA	NA	NA
M8_p20	chr7	6709445	12A2p6	cell line	sgMsh2	6709445	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	124	0	0	NA	exonic	Peg3	nonsynonymous SNV	Peg3:NM_008817:exon9:c.T2777G:p.L926R	7qA1	chr7-3489139-7214089	4	2	2	0.9	4.068082914	NA	1	1	1	0.9988193	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	10490937	12A2p6	cell line	sgMsh2	10490937	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	136	0	0	NA	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.A232G:p.T78A	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9992879	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	11756431	12A2p6	cell line	sgMsh2	11756431	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	250	0	0	NA	exonic	Vmn1r73	nonsynonymous SNV	Vmn1r73:NM_134203:exon1:c.A175G:p.I59V	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999942	CAT	nonsynonymous	TGTC	8	TGTCTGTC	NA
M8_p20	chr7	12260215	12A2p6	cell line	sgMsh2	12260215	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.271	283	0	0	NA	exonic	Vmn1r81	frameshift deletion	Vmn1r81:NM_134210:exon1:c.465delC:p.T156Lfs*5	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TGG	frameshift	NA	NA	NA	-1
M8_p20	chr7	12305079	12A2p6	cell line	sgMsh2	12305079	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	164	0	0	NA	exonic	Vmn1r82	frameshift deletion	Vmn1r82:NM_134234:exon1:c.275delG:p.V94Ffs*8	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8_p20	chr7	13028552	12A2p6	cell line	sgMsh2	13028552	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	75	0	0	NA	exonic	Trim28	nonsynonymous SNV	Trim28:NM_011588:exon7:c.C1102A:p.L368M	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9907462	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	13052957	12A2p6	cell line	sgMsh2	13052957	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	77	0	0	NA	exonic	Mzf1	nonsynonymous SNV	"Mzf1:NM_001382820:exon2:c.C185T:p.A62V,Mzf1:NM_145819:exon2:c.C185T:p.A62V"	7qA1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9914886	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	15945848	12A2p6	cell line	sgMsh2	15945848	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	19	0	0	NA	exonic	Nop53	nonsynonymous SNV	Nop53:NM_133831:exon1:c.T206C:p.L69P	7qA2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9088309	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	16563343	12A2p6	cell line	sgMsh2	16563343	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	172	0	0	NA	exonic	Arhgap35	nonsynonymous SNV	Arhgap35:NM_172739:exon2:c.A1796T:p.N599I	7qA2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9935215	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	16995202	12A2p6	cell line	sgMsh2	16995202	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	26	0	0	NA	exonic	Ccdc8	synonymous SNV	Ccdc8:NM_001101535:exon1:c.G615A:p.L205L	7qA2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9309981	TGA	synonymous	NA	NA	NA	NA
M8_p20	chr7	17759495	12A2p6	cell line	sgMsh2	17759495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	385	0	0	NA	exonic	Ceacam5	synonymous SNV	Ceacam5:NM_028480:exon8:c.C2442T:p.Y814Y	7qA2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	2.05E-08	ACA	synonymous	NA	NA	NA	NA
M8_p20	chr7	18680927	12A2p6	cell line	sgMsh2	18680927	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	381	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon5:c.C1042A:p.L348M	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	2.41E-08	AGC	nonsynonymous	AGC	8	AGCAGCAG	NA
M8_p20	chr7	18790066	12A2p6	cell line	sgMsh2	18790066	A	G	SNV	Mutect2;Vardict	2	0.046	477	0	0	NA	exonic	Psg19	synonymous SNV	Psg19:NM_011964:exon5:c.T1413C:p.A471A	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.207924238	3	1	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	19152516	12A2p6	cell line	sgMsh2	19152516	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	59	0	0	NA	exonic	Snrpd2	nonsynonymous SNV	Snrpd2:NM_026943:exon3:c.A223T:p.T75S	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9819865	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	19619595	12A2p6	cell line	sgMsh2	19619595	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.41	31	0	0	NA	exonic	Relb	synonymous SNV	Relb:NM_001290457:exon3:c.C348A:p.R116R	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.943494	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr7	19643130	12A2p6	cell line	sgMsh2	19643130	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	128	0	0	NA	exonic	Clptm1	nonsynonymous SNV	Clptm1:NM_019649:exon5:c.T508G:p.F170V	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	23408209	12A2p6	cell line	sgMsh2	23408209	A	C	SNV	Mutect2;Strelka2	2	0.169	200	0	0	NA	exonic	Nlrp5	synonymous SNV	"Nlrp5:NM_001305857:exon4:c.A306C:p.S102S,Nlrp5:NM_001039143:exon5:c.A306C:p.S102S,Nlrp5:NM_011860:exon5:c.A306C:p.S102S"	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.763895569	2	0.9231737	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	24422308	12A2p6	cell line	sgMsh2	24422308	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	140	0	0	NA	exonic	Smg9	nonsynonymous SNV	Smg9:NM_028047:exon14:c.A1493G:p.Y498C	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.818136675	1	0.6708081	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	25079949	12A2p6	cell line	sgMsh2	25079949	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	53	0	0	NA	exonic	Zfp574	nonsynonymous SNV	"Zfp574:NM_175477:exon2:c.A395C:p.K132T,Zfp574:NM_001168506:exon3:c.A395C:p.K132T"	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9769169	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	25094839	12A2p6	cell line	sgMsh2	25094839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	128	0	0	NA	exonic	Pou2f2	synonymous SNV	"Pou2f2:NM_001163554:exon12:c.C1101T:p.G367G,Pou2f2:NM_001163555:exon12:c.C1167T:p.G389G,Pou2f2:NM_001163556:exon12:c.C1101T:p.G367G,Pou2f2:NM_011138:exon12:c.C1149T:p.G383G"	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	CGC	synonymous	C	5	CCCCC	NA
M8_p20	chr7	25272796	12A2p6	cell line	sgMsh2	25272796	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	41	0	0	NA	exonic	Cic	nonsynonymous SNV	Cic:NM_001302811:exon2:c.A1951G:p.I651V	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.804576399	1	0.754416	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	25326457	12A2p6	cell line	sgMsh2	25326457	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	69	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon2:c.T265C:p.Y89H	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	25630422	12A2p6	cell line	sgMsh2	25630422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	37	0	0	NA	exonic	Bckdha	synonymous SNV	Bckdha:NM_007533:exon9:c.C1182A:p.A394A	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9556195	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr7	25714791	12A2p6	cell line	sgMsh2	25714791	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	21	0	0	NA	exonic	Ccdc97	nonsynonymous SNV	"Ccdc97:NM_001368381:exon3:c.G732T:p.E244D,Ccdc97:NM_028771:exon3:c.G732T:p.E244D,Ccdc97:NM_001368382:exon4:c.G537T:p.E179D,Ccdc97:NM_001368384:exon4:c.G537T:p.E179D,Ccdc97:NM_001368383:exon5:c.G537T:p.E179D"	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9158085	CCT	nonsynonymous	CCT	15	CCTCCTCCTCCTCCT	NA
M8_p20	chr7	26449792	12A2p6	cell line	sgMsh2	26449792	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	261	0	0	NA	exonic	Nlrp4a	nonsynonymous SNV	"Nlrp4a:NM_001362156:exon4:c.C823A:p.L275I,Nlrp4a:NM_172896:exon4:c.C823A:p.L275I"	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999963	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	26611187	12A2p6	cell line	sgMsh2	26611187	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	202	0	0	NA	exonic	Vmn1r185	nonsynonymous SNV	Vmn1r185:NM_134231:exon1:c.A892G:p.M298V	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.999956	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	27518969	12A2p6	cell line	sgMsh2	27518969	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	60	0	0	NA	exonic	Prx	nonsynonymous SNV	Prx:NM_198048:exon7:c.C3311T:p.A1104V	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9827178	GCA	nonsynonymous	AGGC	8	AGGCAGGC	NA
M8_p20	chr7	27665037	12A2p6	cell line	sgMsh2	27665037	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.177	24	0	0	NA	exonic	Map3k10	nonsynonymous SNV	Map3k10:NM_001290528:exon3:c.T925A:p.L309M	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.800056306	1	0.7738859	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	28153054	12A2p6	cell line	sgMsh2	28153054	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.171	54	0	0	NA	exonic	9530053A07Rik	nonsynonymous SNV	9530053A07Rik:NM_001164655:exon11:c.A4001G:p.Q1334R	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.772935754	1	0.6351934	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	28320255	12A2p6	cell line	sgMsh2	28320255	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	138	0	0	NA	exonic	Supt5	nonsynonymous SNV	Supt5:NM_013676:exon17:c.T1489C:p.F497L	7qA3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.65993345	2	0.9904485	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	28395855	12A2p6	cell line	sgMsh2	28395855	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	171	0	0	NA	exonic	Paf1	synonymous SNV	Paf1:NM_019458:exon6:c.T444C:p.N148N	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.9819209	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr7	28795749	12A2p6	cell line	sgMsh2	28795749	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.413	43	0	0	NA	exonic	Rinl	stopgain	"Rinl:NM_001358916:exon7:c.G546A:p.W182X,Rinl:NM_177158:exon7:c.G546A:p.W182X"	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9652154	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	28911544	12A2p6	cell line	sgMsh2	28911544	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	150	0	0	NA	exonic	Actn4	nonsynonymous SNV	Actn4:NM_021895:exon8:c.G768T:p.K256N	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9879149	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	29071612	12A2p6	cell line	sgMsh2	29071612	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	194	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon49:c.T7886G:p.F2629C	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.999918	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	29094230	12A2p6	cell line	sgMsh2	29094230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	29	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon28:c.T3812C:p.L1271P	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9387841	CAG	nonsynonymous	GCAG	9	GCAGGCAGG	NA
M8_p20	chr7	29101948	12A2p6	cell line	sgMsh2	29101948	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	17	0	0	NA	exonic	Ryr1	nonsynonymous SNV	Ryr1:NM_009109:exon20:c.T2369C:p.V790A	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.09722284	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	30270178	12A2p6	cell line	sgMsh2	30270178	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	46	0	0	NA	exonic	Wdr62	frameshift deletion	Wdr62:NM_146186:exon7:c.853delA:p.R285Gfs*8	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr7	30454531	12A2p6	cell line	sgMsh2	30454531	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	109	0	0	NA	exonic	Kirrel2	synonymous SNV	Kirrel2:NM_172898:exon5:c.A642G:p.T214T	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9662083	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr7	30583737	12A2p6	cell line	sgMsh2	30583737	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	205	0	0	NA	exonic	Kmt2b	synonymous SNV	"Kmt2b:NM_001290573:exon7:c.G3036A:p.K1012K,Kmt2b:NM_029274:exon7:c.G3036A:p.K1012K"	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999612	TCT	synonymous	NA	NA	NA	NA
M8_p20	chr7	34228936	12A2p6	cell line	sgMsh2	34228936	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	45	0	0	NA	exonic	Gpi1	nonsynonymous SNV	Gpi1:NM_008155:exon3:c.T274C:p.Y92H	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9679424	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	34245721	12A2p6	cell line	sgMsh2	34245721	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	237	0	0	NA	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon10:c.A1733C:p.Q578P,Garre1:NM_172741:exon10:c.A1733C:p.Q578P"	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999899	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	34245758	12A2p6	cell line	sgMsh2	34245758	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	225	0	0	NA	exonic	Garre1	frameshift deletion	"Garre1:NM_001382305:exon10:c.1696delG:p.A566Pfs*2,Garre1:NM_172741:exon10:c.1696delG:p.A566Pfs*2"	7qB1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
M8_p20	chr7	35044341	12A2p6	cell line	sgMsh2	35044341	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	81	0	0	NA	exonic	Pepd	synonymous SNV	Pepd:NM_008820:exon15:c.A1455T:p.A485A	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9928006	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr7	35291803	12A2p6	cell line	sgMsh2	35291803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	97	0	0	NA	exonic	Gpatch1	synonymous SNV	Gpatch1:NM_026181:exon13:c.G1815A:p.K605K	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9963212	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr7	35334351	12A2p6	cell line	sgMsh2	35334351	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	44	0	0	NA	exonic	Rhpn2	synonymous SNV	Rhpn2:NM_027897:exon1:c.T9C:p.D3D	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9666059	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr7	35695402	12A2p6	cell line	sgMsh2	35695402	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	112	0	0	NA	exonic	Dpy19l3	synonymous SNV	Dpy19l3:NM_178704:exon17:c.A1710C:p.P570P	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9980427	TTG	synonymous	CCTT	8	CCTTCCTT	NA
M8_p20	chr7	35776505	12A2p6	cell line	sgMsh2	35776505	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	203	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon6:c.A2392C:p.S798R	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999578	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	35794788	12A2p6	cell line	sgMsh2	35794788	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	85	0	0	NA	exonic	Zfp507	nonsynonymous SNV	Zfp507:NM_177739:exon3:c.C829A:p.L277I	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9939116	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	36771068	12A2p6	cell line	sgMsh2	36771068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	147	0	0	NA	exonic	Tshz3	synonymous SNV	Tshz3:NM_172298:exon2:c.A2481G:p.T827T	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.668973635	2	0.9924576	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr7	37493751	12A2p6	cell line	sgMsh2	37493751	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	72	0	0	NA	exonic	Zfp536	nonsynonymous SNV	Zfp536:NM_172385:exon5:c.G2264A:p.C755Y	7qB2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8338583	GCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	40994381	12A2p6	cell line	sgMsh2	40994381	G	A	SNV	Mutect2;Vardict	2	0.059	164	0	0	NA	exonic	4930433I11Rik	synonymous SNV	4930433I11Rik:NM_207248:exon2:c.G1473A:p.K491K	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.266685435	3	0.9999997	AGC	synonymous	NA	NA	NA	NA
M8_p20	chr7	42136617	12A2p6	cell line	sgMsh2	42136617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	574	0	0	NA	exonic	Vmn2r60	synonymous SNV	Vmn2r60:NM_001105057:exon3:c.A843G:p.V281V	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-09	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr7	42765176	12A2p6	cell line	sgMsh2	42765176	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	218	0	0	NA	exonic	Vmn2r62	synonymous SNV	Vmn2r62:NM_001105059:exon6:c.A1842G:p.R614R	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999776	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr7	43572642	12A2p6	cell line	sgMsh2	43572642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	86	0	0	NA	exonic	Zfp658	nonsynonymous SNV	Zfp658:NM_001008549:exon5:c.T340C:p.F114L	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9941616	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	43659333	12A2p6	cell line	sgMsh2	43659333	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	117	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon2:c.A595G:p.T199A	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9984143	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	44390791	12A2p6	cell line	sgMsh2	44390791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	49	0	0	NA	exonic	Syt3	synonymous SNV	"Syt3:NM_001114116:exon4:c.A447G:p.P149P,Syt3:NM_016663:exon4:c.A447G:p.P149P"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9727877	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	44468866	12A2p6	cell line	sgMsh2	44468866	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	98	0	0	NA	exonic	Josd2	nonsynonymous SNV	"Josd2:NM_001205071:exon2:c.T43C:p.Y15H,Josd2:NM_001205072:exon2:c.T43C:p.Y15H,Josd2:NM_001205073:exon2:c.T43C:p.Y15H,Josd2:NM_001360604:exon2:c.T43C:p.Y15H,Josd2:NM_025368:exon2:c.T43C:p.Y15H,Josd2:NM_001205070:exon3:c.T43C:p.Y15H"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9964726	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	44860083	12A2p6	cell line	sgMsh2	44860083	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	138	0	0	NA	exonic	Pnkp	nonsynonymous SNV	"Pnkp:NM_021549:exon6:c.A640T:p.I214F,Pnkp:NM_001290764:exon7:c.A640T:p.I214F"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	0.9890192	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	44943424	12A2p6	cell line	sgMsh2	44943424	-	A	Insertion	Strelka2;Vardict	2	0.2143	28	0	0	NA	exonic	Tsks	frameshift insertion	"Tsks:NM_001077591:exon1:c.142dupA:p.K51Efs*75,Tsks:NM_011651:exon1:c.142dupA:p.K51Efs*75"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.968655743	NA	NA	CGA	frameshift	A	8	AAAAAAAA	1
M8_p20	chr7	44991432	12A2p6	cell line	sgMsh2	44991432	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	99	0	0	NA	exonic	Bcl2l12	nonsynonymous SNV	Bcl2l12:NM_029410:exon7:c.C740T:p.P247L	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9966178	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	45048510	12A2p6	cell line	sgMsh2	45048510	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	44	0	0	NA	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon4:c.T1980C:p.G660G	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9666059	CAC	synonymous	CACC	8	CACCCACC	NA
M8_p20	chr7	45134503	12A2p6	cell line	sgMsh2	45134503	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	86	0	0	NA	exonic	Flt3l	nonsynonymous SNV	Flt3l:NM_013520:exon5:c.A215G:p.K72R	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.991023	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	45348482	12A2p6	cell line	sgMsh2	45348482	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	52	0	0	NA	exonic	Ppfia3	synonymous SNV	Ppfia3:NM_029741:exon17:c.T2220C:p.D740D	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.678013819	2	0.6568907	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr7	45521018	12A2p6	cell line	sgMsh2	45521018	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	143	0	0	NA	exonic	Tulp2	nonsynonymous SNV	"Tulp2:NM_001290996:exon8:c.A1045G:p.R349G,Tulp2:NM_001290998:exon8:c.A988G:p.R330G,Tulp2:NM_001290999:exon8:c.A1024G:p.R342G,Tulp2:NM_001045555:exon11:c.A1360G:p.R454G,Tulp2:NM_008807:exon11:c.A1360G:p.R454G"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.664453543	2	0.9917841	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	45619299	12A2p6	cell line	sgMsh2	45619299	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	138	0	0	NA	exonic	Fut1	nonsynonymous SNV	"Fut1:NM_001271981:exon2:c.T511C:p.Y171H,Fut1:NM_008051:exon2:c.T676C:p.Y226H"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9993455	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	45897436	12A2p6	cell line	sgMsh2	45897436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	49	0	0	NA	exonic	Tmem143	nonsynonymous SNV	Tmem143:NM_144801:exon2:c.C25T:p.L9F	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9727877	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	46301136	12A2p6	cell line	sgMsh2	46301136	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	45	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon45:c.A7486G:p.T2496A	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9679424	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	46427811	12A2p6	cell line	sgMsh2	46427811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	100	0	0	NA	exonic	Kcnc1	synonymous SNV	"Kcnc1:NM_001112739:exon2:c.C1036T:p.L346L,Kcnc1:NM_008421:exon2:c.C1036T:p.L346L"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.996757	CCT	synonymous	CTG	8	CTGCTGCT	NA
M8_p20	chr7	46805096	12A2p6	cell line	sgMsh2	46805096	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	147	0	0	NA	exonic	Gtf2h1	nonsynonymous SNV	"Gtf2h1:NM_001360075:exon4:c.G504T:p.Q168H,Gtf2h1:NM_008186:exon4:c.G483T:p.Q161H,Gtf2h1:NM_001291075:exon5:c.G501T:p.Q167H,Gtf2h1:NM_001360076:exon5:c.G501T:p.Q167H"	7qB3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995522	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	49911773	12A2p6	cell line	sgMsh2	49911773	G	A	SNV	Mutect2;Strelka2;MuSe	3	0.302	93	0	0	NA	exonic	Slc6a5	nonsynonymous SNV	"Slc6a5:NM_148931:exon1:c.G52A:p.D18N,Slc6a5:NM_001146013:exon2:c.G76A:p.D26N"	7qB4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	GGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	49911775	12A2p6	cell line	sgMsh2	49911775	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.302	93	0	0	NA	exonic	Slc6a5	synonymous SNV	"Slc6a5:NM_148931:exon1:c.T54C:p.D18D,Slc6a5:NM_001146013:exon2:c.T78C:p.D26D"	7qB4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9956479	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr7	50448892	12A2p6	cell line	sgMsh2	50448892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	247	0	0	NA	exonic	Nell1	synonymous SNV	Nell1:NM_001037906:exon13:c.T1353C:p.C451C	7qB4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.777455846	2	0.9271335	GTG	synonymous	GT	8	GTGTGTGT	NA
M8_p20	chr7	55933103	12A2p6	cell line	sgMsh2	55933103	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	142	0	0	NA	exonic	Nipa2	nonsynonymous SNV	"Nipa2:NM_001256133:exon5:c.C698T:p.A233V,Nipa2:NM_001256131:exon6:c.C893T:p.A298V,Nipa2:NM_001256130:exon7:c.C893T:p.A298V,Nipa2:NM_001256132:exon7:c.C893T:p.A298V,Nipa2:NM_023647:exon7:c.C893T:p.A298V"	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994471	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	56212866	12A2p6	cell line	sgMsh2	56212866	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	113	0	0	NA	exonic	Herc2	synonymous SNV	"Herc2:NM_001360080:exon80:c.A12282G:p.E4094E,Herc2:NM_010418:exon80:c.A12282G:p.E4094E"	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9786319	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	56729649	12A2p6	cell line	sgMsh2	56729649	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	142	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon8:c.C1004T:p.A335V	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.962779623	1	0.9977804	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	57381718	12A2p6	cell line	sgMsh2	57381718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	128	0	0	NA	exonic	Gabrg3	nonsynonymous SNV	Gabrg3:NM_008074:exon2:c.G73T:p.D25Y	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	TCT	nonsynonymous	TCT	9	TCTTCTTCT	NA
M8_p20	chr7	58807466	12A2p6	cell line	sgMsh2	58807466	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	240	0	0	NA	exonic	Atp10a	synonymous SNV	Atp10a:NM_009728:exon13:c.A2712G:p.T904T	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.9932906	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr7	59276469	12A2p6	cell line	sgMsh2	59276469	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	255	0	0	NA	exonic	Ube3a	nonsynonymous SNV	"Ube3a:NM_001033962:exon4:c.A994G:p.S332G,Ube3a:NM_011668:exon6:c.A1057G:p.S353G"	7qB5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999953	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	62418901	12A2p6	cell line	sgMsh2	62418901	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	79	0	0	NA	exonic	Mkrn3	nonsynonymous SNV	Mkrn3:NM_011746:exon1:c.C1141T:p.R381C	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9921718	CGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	62419972	12A2p6	cell line	sgMsh2	62419972	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.513	13	0	0	NA	exonic	Mkrn3	frameshift deletion	Mkrn3:NM_011746:exon1:c.70delG:p.E24Rfs*35	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
M8_p20	chr7	66784798	12A2p6	cell line	sgMsh2	66784798	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	438	0	0	NA	exonic	Cers3	nonsynonymous SNV	Cers3:NM_001164201:exon7:c.T646C:p.W216R	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	3.09E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	67295436	12A2p6	cell line	sgMsh2	67295436	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	207	0	0	NA	exonic	Mef2a	nonsynonymous SNV	"Mef2a:NM_001033713:exon4:c.T197G:p.L66R,Mef2a:NM_001291191:exon4:c.T197G:p.L66R,Mef2a:NM_001291192:exon4:c.T197G:p.L66R,Mef2a:NM_001291195:exon4:c.T197G:p.L66R,Mef2a:NM_001357324:exon4:c.T197G:p.L66R,Mef2a:NM_001357325:exon4:c.T197G:p.L66R"	7qC	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9968263	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	79082251	12A2p6	cell line	sgMsh2	79082251	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	215	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon2:c.A57C:p.S19S,Acan:NM_007424:exon2:c.A57C:p.S19S"	7qD2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999746	CAG	synonymous	AGA	8	AGAAGAAG	NA
M8_p20	chr7	80220860	12A2p6	cell line	sgMsh2	80220860	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.351	115	0	0	NA	exonic	Sema4b	nonsynonymous SNV	"Sema4b:NM_001360135:exon12:c.T1555C:p.C519R,Sema4b:NM_013659:exon13:c.T1555C:p.C519R"	7qD2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.998275	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	80261346	12A2p6	cell line	sgMsh2	80261346	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.249	16	0	0	NA	exonic	Ngrn	synonymous SNV	Ngrn:NM_031375:exon1:c.C87G:p.G29G	7qD2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.8972155	GCC	synonymous	NA	NA	NA	NA
M8_p20	chr7	80284023	12A2p6	cell line	sgMsh2	80284023	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	146	0	0	NA	exonic	Vps33b	nonsynonymous SNV	Vps33b:NM_178070:exon9:c.G647A:p.S216N	7qD2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995329	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	80326167	12A2p6	cell line	sgMsh2	80326167	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	50	0	0	NA	exonic	Unc45a	nonsynonymous SNV	Unc45a:NM_133952:exon19:c.T2423C:p.V808A	7qD2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.664453543	2	0.6719947	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	80723940	12A2p6	cell line	sgMsh2	80723940	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	132	0	0	NA	exonic	Iqgap1	nonsynonymous SNV	Iqgap1:NM_016721:exon34:c.A4300C:p.T1434P	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991572	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	81037440	12A2p6	cell line	sgMsh2	81037440	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	67	0	0	NA	exonic	Zfp592	synonymous SNV	Zfp592:NM_178707:exon5:c.A2490T:p.A830A	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9819839	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr7	81101095	12A2p6	cell line	sgMsh2	81101095	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	91	0	0	NA	exonic	Alpk3	nonsynonymous SNV	Alpk3:NM_054085:exon12:c.T4612C:p.W1538R	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9952666	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	81282896	12A2p6	cell line	sgMsh2	81282896	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	220	0	0	NA	exonic	Pde8a	nonsynonymous SNV	Pde8a:NM_008803:exon3:c.A305G:p.K102R	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999794	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	81348426	12A2p6	cell line	sgMsh2	81348426	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	60	0	0	NA	exonic	Cpeb1	nonsynonymous SNV	"Cpeb1:NM_001357107:exon10:c.A1361T:p.Y454F,Cpeb1:NM_001252525:exon12:c.A1604T:p.Y535F,Cpeb1:NM_001252526:exon12:c.A1586T:p.Y529F,Cpeb1:NM_007755:exon12:c.A1601T:p.Y534F"	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.7991486	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	82611790	12A2p6	cell line	sgMsh2	82611790	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	75	0	0	NA	exonic	Adamtsl3	nonsynonymous SNV	Adamtsl3:NM_001190374:exon29:c.G4931A:p.G1644E	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9907462	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	85152619	12A2p6	cell line	sgMsh2	85152619	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	218	0	0	NA	exonic	Vmn2r67	nonsynonymous SNV	Vmn2r67:NM_001102579:exon2:c.C473A:p.P158H	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8610425	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	86165569	12A2p6	cell line	sgMsh2	86165569	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	448	0	0	NA	exonic	Vmn2r75	nonsynonymous SNV	Vmn2r75:NM_001102578:exon3:c.A715C:p.I239L	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	2.37E-09	ATC	nonsynonymous	ATA	8	ATAATAAT	NA
M8_p20	chr7	86230157	12A2p6	cell line	sgMsh2	86230157	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	165	0	0	NA	exonic	Vmn2r76	nonsynonymous SNV	Vmn2r76:NM_001384930:exon3:c.C925A:p.L309I	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.840737136	1	0.8250863	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	86466012	12A2p6	cell line	sgMsh2	86466012	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	374	0	0	NA	exonic	Olfr299	synonymous SNV	Olfr299:NM_001011767:exon1:c.T600C:p.S200S	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	3.21E-08	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr7	86694497	12A2p6	cell line	sgMsh2	86694497	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.258	162	0	0	NA	exonic	Olfr292	frameshift insertion	Olfr292:NM_146620:exon2:c.41dupT:p.A16Cfs*1	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
M8_p20	chr7	86802040	12A2p6	cell line	sgMsh2	86802040	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	445	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon3:c.G1133T:p.W378L	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	2.56E-09	TGG	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr7	86811337	12A2p6	cell line	sgMsh2	86811337	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	462	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.G1870A:p.V624I	7qD3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.76E-09	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	91940066	12A2p6	cell line	sgMsh2	91940066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	199	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon7:c.A672G:p.V224V	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	TAA	synonymous	A	5	AAAAA	NA
M8_p20	chr7	91940074	12A2p6	cell line	sgMsh2	91940074	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	199	0	0	NA	exonic	Dlg2	nonsynonymous SNV	Dlg2:NM_011807:exon7:c.T680A:p.I227N	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	ATT	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr7	96888874	12A2p6	cell line	sgMsh2	96888874	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	198	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon29:c.C5653T:p.R1885C,Tenm4:NM_001310762:exon29:c.C5629T:p.R1877C,Tenm4:NM_011858:exon29:c.C5542T:p.R1848C"	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999479	TCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	98071054	12A2p6	cell line	sgMsh2	98071054	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	86	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon30:c.G3967A:p.G1323S,Myo7a:NM_001256081:exon31:c.G4000A:p.G1334S,Myo7a:NM_001256082:exon31:c.G3985A:p.G1329S,Myo7a:NM_008663:exon31:c.G4000A:p.G1334S"	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.7727932	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	98075118	12A2p6	cell line	sgMsh2	98075118	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	152	0	0	NA	exonic	Myo7a	nonsynonymous SNV	"Myo7a:NM_001256083:exon26:c.A3359T:p.N1120I,Myo7a:NM_001256081:exon27:c.A3392T:p.N1131I,Myo7a:NM_001256082:exon27:c.A3377T:p.N1126I,Myo7a:NM_008663:exon27:c.A3392T:p.N1131I"	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	98847363	12A2p6	cell line	sgMsh2	98847363	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	46	0	0	NA	exonic	Wnt11	nonsynonymous SNV	"Wnt11:NM_009519:exon3:c.A509G:p.K170R,Wnt11:NM_001285794:exon4:c.A314G:p.K105R,Wnt11:NM_001285792:exon5:c.A509G:p.K170R"	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.72321474	1	0.008223592	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	99667112	12A2p6	cell line	sgMsh2	99667112	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	73	0	0	NA	exonic	Slco2b1	nonsynonymous SNV	"Slco2b1:NM_001252530:exon9:c.A1210G:p.T404A,Slco2b1:NM_001252531:exon9:c.A1180G:p.T394A,Slco2b1:NM_175316:exon9:c.A1180G:p.T394A"	7qE1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	100407060	12A2p6	cell line	sgMsh2	100407060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	86	0	0	NA	exonic	C2cd3	synonymous SNV	C2cd3:NM_001017985:exon10:c.A1674G:p.A558A	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9941616	CAG	synonymous	CAG	8	CAGCAGCA	NA
M8_p20	chr7	100497160	12A2p6	cell line	sgMsh2	100497160	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	61	0	0	NA	exonic	Ucp2	synonymous SNV	Ucp2:NM_011671:exon4:c.T192C:p.G64G	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9834199	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr7	100503182	12A2p6	cell line	sgMsh2	100503182	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	54	0	0	NA	exonic	Dnajb13	nonsynonymous SNV	Dnajb13:NM_153527:exon8:c.T926C:p.M309T	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9778495	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102134772	12A2p6	cell line	sgMsh2	102134772	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	136	0	0	NA	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon23:c.C3352T:p.P1118S,Nup98:NM_001287165:exon23:c.C3301T:p.P1101S,Nup98:NM_022979:exon23:c.C3352T:p.P1118S"	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9992879	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102185875	12A2p6	cell line	sgMsh2	102185875	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	98	0	0	NA	exonic	Nup98	nonsynonymous SNV	"Nup98:NM_001287164:exon7:c.C770T:p.T257I,Nup98:NM_001287165:exon7:c.C770T:p.T257I,Nup98:NM_001287166:exon7:c.C770T:p.T257I,Nup98:NM_001287167:exon7:c.C770T:p.T257I,Nup98:NM_022979:exon7:c.C770T:p.T257I"	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9964726	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102240007	12A2p6	cell line	sgMsh2	102240007	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	108	0	0	NA	exonic	Rhog	nonsynonymous SNV	Rhog:NM_019566:exon2:c.A238G:p.I80V	7qE2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102446655	12A2p6	cell line	sgMsh2	102446655	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	187	0	0	NA	exonic	Rrm1	nonsynonymous SNV	Rrm1:NM_009103:exon3:c.C214A:p.P72T	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999171	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102450924	12A2p6	cell line	sgMsh2	102450924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	131	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon7:c.T511C:p.L171L	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991209	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr7	102460380	12A2p6	cell line	sgMsh2	102460380	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	158	0	0	NA	exonic	Rrm1	synonymous SNV	Rrm1:NM_009103:exon13:c.T1410C:p.T470T	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr7	102605278	12A2p6	cell line	sgMsh2	102605278	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	139	0	0	NA	exonic	Olfr552	nonsynonymous SNV	Olfr552:NM_147102:exon1:c.T923C:p.L308P	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993725	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102640773	12A2p6	cell line	sgMsh2	102640773	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	186	0	0	NA	exonic	Olfr554	nonsynonymous SNV	Olfr554:NM_146325:exon1:c.G526C:p.V176L	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999135	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	102927910	12A2p6	cell line	sgMsh2	102927910	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	240	0	0	NA	exonic	Olfr572	nonsynonymous SNV	Olfr572:NM_147089:exon1:c.T281A:p.I94N	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999911	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	103359189	12A2p6	cell line	sgMsh2	103359189	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	187	0	0	NA	exonic	Olfr601	nonsynonymous SNV	Olfr601:NM_146314:exon1:c.G4T:p.G2W	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999171	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	103383555	12A2p6	cell line	sgMsh2	103383555	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	476	0	0	NA	exonic	Olfr603	nonsynonymous SNV	Olfr603:NM_147070:exon1:c.T446C:p.V149A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9999996	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	103460955	12A2p6	cell line	sgMsh2	103460955	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	179	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A252G:p.V84V	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9996459	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr7	103460988	12A2p6	cell line	sgMsh2	103460988	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	201	0	0	NA	exonic	Olfr607	synonymous SNV	Olfr607:NM_001370895:exon2:c.A219G:p.A73A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999541	ATG	synonymous	NA	NA	NA	NA
M8_p20	chr7	103716732	12A2p6	cell line	sgMsh2	103716732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	354	0	0	NA	exonic	Olfr243	nonsynonymous SNV	Olfr243:NM_001025386:exon1:c.T137C:p.L46P	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	103767449	12A2p6	cell line	sgMsh2	103767449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	197	0	0	NA	exonic	Olfr69	nonsynonymous SNV	Olfr69:NM_013621:exon3:c.T947C:p.L316P	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999456	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	104179892	12A2p6	cell line	sgMsh2	104179892	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	301	0	0	NA	exonic	Olfr648	nonsynonymous SNV	Olfr648:NM_146751:exon1:c.G515A:p.R172K	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999993	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	104306975	12A2p6	cell line	sgMsh2	104306975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	127	0	0	NA	exonic	Trim12a	synonymous SNV	"Trim12a:NM_001368753:exon2:c.G357A:p.E119E,Trim12a:NM_001368754:exon2:c.G357A:p.E119E,Trim12a:NM_023835:exon2:c.G357A:p.E119E"	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9989595	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr7	104341186	12A2p6	cell line	sgMsh2	104341186	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	248	0	0	NA	exonic	Trim12c	frameshift deletion	"Trim12c:NM_001146007:exon8:c.1083delA:p.G362Vfs*6,Trim12c:NM_175677:exon8:c.1083delA:p.G362Vfs*6"	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr7	104553091	12A2p6	cell line	sgMsh2	104553091	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	191	0	0	NA	exonic	Olfr651	nonsynonymous SNV	Olfr651:NM_146813:exon1:c.G171T:p.E57D	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.99993	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	104635888	12A2p6	cell line	sgMsh2	104635888	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	328	0	0	NA	exonic	Olfr657	synonymous SNV	Olfr657:NM_146312:exon1:c.C213A:p.I71I	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999998	TCC	synonymous	NA	NA	NA	NA
M8_p20	chr7	104840845	12A2p6	cell line	sgMsh2	104840845	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	545	0	0	NA	exonic	Usp17lb	nonsynonymous SNV	"Usp17lb:NM_001358922:exon2:c.C871A:p.L291I,Usp17lb:NM_201409:exon2:c.C874A:p.L292I"	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.02E-09	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	104975446	12A2p6	cell line	sgMsh2	104975446	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	272	0	0	NA	exonic	Olfr671	nonsynonymous SNV	Olfr671:NM_001011755:exon1:c.T538C:p.Y180H	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.610212437	2	0.9945549	TAA	nonsynonymous	AGTA	8	AGTAAGTA	NA
M8_p20	chr7	105035532	12A2p6	cell line	sgMsh2	105035532	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.315	230	0	0	NA	exonic	Olfr676	frameshift insertion	Olfr676:NM_147095:exon1:c.334dupT:p.I114Yfs*17	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TCT	frameshift	T	5	TTTTT	1
M8_p20	chr7	105390033	12A2p6	cell line	sgMsh2	105390033	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	127	0	0	NA	exonic	Fam160a2	synonymous SNV	"Fam160a2:NM_001242364:exon2:c.T126C:p.N42N,Fam160a2:NM_001242365:exon2:c.T126C:p.N42N,Fam160a2:NM_199009:exon2:c.T126C:p.N42N,Fam160a2:NM_001242363:exon3:c.T126C:p.N42N"	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9989595	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr7	105555462	12A2p6	cell line	sgMsh2	105555462	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	119	0	0	NA	exonic	Smpd1	frameshift deletion	Smpd1:NM_011421:exon2:c.547delC:p.P184Qfs*71	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8_p20	chr7	106824071	12A2p6	cell line	sgMsh2	106824071	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	141	0	0	NA	exonic	Olfr702	nonsynonymous SNV	Olfr702:NM_146597:exon2:c.G454T:p.G152W	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994233	CCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	106844960	12A2p6	cell line	sgMsh2	106844960	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	285	0	0	NA	exonic	Olfr703	synonymous SNV	Olfr703:NM_146596:exon1:c.C348A:p.A116A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999987	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr7	106944356	12A2p6	cell line	sgMsh2	106944356	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	0	0	NA	exonic	Olfr710	nonsynonymous SNV	Olfr710:NM_146601:exon2:c.T644C:p.L215P	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9966178	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	106956664	12A2p6	cell line	sgMsh2	106956664	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	221	0	0	NA	exonic	Olfr6	nonsynonymous SNV	Olfr6:NM_206897:exon1:c.T271G:p.S91A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999802	GAA	nonsynonymous	AAGA	10	AAGAAAGAAA	NA
M8_p20	chr7	107036944	12A2p6	cell line	sgMsh2	107036944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	206	0	0	NA	exonic	Olfr713	nonsynonymous SNV	Olfr713:NM_147034:exon1:c.C809A:p.P270H	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999628	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	107182835	12A2p6	cell line	sgMsh2	107182835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	238	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.A1238G:p.N413S	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999904	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	107845395	12A2p6	cell line	sgMsh2	107845395	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	380	0	0	NA	exonic	Olfr470	nonsynonymous SNV	Olfr470:NM_146425:exon1:c.C337A:p.L113I	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8867085	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	108031681	12A2p6	cell line	sgMsh2	108031681	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	574	0	0	NA	exonic	Olfr478	nonsynonymous SNV	Olfr478:NM_146734:exon2:c.T661C:p.Y221H	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-09	TAG	nonsynonymous	GATGTA	13	GATGTAGATGTAG	NA
M8_p20	chr7	108065933	12A2p6	cell line	sgMsh2	108065933	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	437	0	0	NA	exonic	Olfr480	synonymous SNV	Olfr480:NM_020291:exon1:c.T774C:p.I258I	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	5.14E-09	AAA	synonymous	AATG	8	AATGAATG	NA
M8_p20	chr7	108066532	12A2p6	cell line	sgMsh2	108066532	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	256	0	0	NA	exonic	Olfr480	nonsynonymous SNV	Olfr480:NM_020291:exon1:c.A175G:p.M59V	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999955	ATG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr7	108124348	12A2p6	cell line	sgMsh2	108124348	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	167	0	0	NA	exonic	Olfr484	nonsynonymous SNV	Olfr484:NM_146499:exon1:c.G914T:p.R305M	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998073	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	108171874	12A2p6	cell line	sgMsh2	108171874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	267	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.C869T:p.P290L	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999972	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	108317521	12A2p6	cell line	sgMsh2	108317521	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	519	0	0	NA	exonic	Olfr491	nonsynonymous SNV	Olfr491:NM_146736:exon1:c.T626C:p.V209A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.9999995	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	108346260	12A2p6	cell line	sgMsh2	108346260	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	660	0	0	NA	exonic	Olfr493	synonymous SNV	Olfr493:NM_146310:exon1:c.C720A:p.A240A	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr7	108714066	12A2p6	cell line	sgMsh2	108714066	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.242	403	0	0	NA	exonic	Olfr512	nonsynonymous SNV	Olfr512:NM_146724:exon1:c.C712A:p.L238M	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-08	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	110895809	12A2p6	cell line	sgMsh2	110895809	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	103	0	0	NA	exonic	Mrvi1	nonsynonymous SNV	"Mrvi1:NM_010826:exon14:c.A2026T:p.S676C,Mrvi1:NM_194464:exon15:c.A1831T:p.S611C"	7qE3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.795536214	1	0.5768173	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	112150684	12A2p6	cell line	sgMsh2	112150684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	117	0	0	NA	exonic	Dkk3	nonsynonymous SNV	"Dkk3:NM_001360257:exon3:c.A329G:p.N110S,Dkk3:NM_001360260:exon3:c.A278G:p.N93S,Dkk3:NM_001360261:exon3:c.A278G:p.N93S,Dkk3:NM_015814:exon3:c.A278G:p.N93S"	7qF1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9984143	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	113568255	12A2p6	cell line	sgMsh2	113568255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	456	0	0	NA	exonic	Far1	stoploss	"Far1:NM_001285831:exon13:c.T1546C:p.X516R,Far1:NM_001360668:exon13:c.T1546C:p.X516R,Far1:NM_001360669:exon13:c.T1546C:p.X516R,Far1:NM_027379:exon13:c.T1546C:p.X516R"	7qF1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	1.98E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	114048247	12A2p6	cell line	sgMsh2	114048247	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	199	0	0	NA	exonic	Rras2	nonsynonymous SNV	Rras2:NM_025846:exon6:c.T532A:p.F178I	7qF1	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.99995	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	119580423	12A2p6	cell line	sgMsh2	119580423	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	171	0	0	NA	exonic	Acsm2	nonsynonymous SNV	"Acsm2:NM_001177977:exon7:c.A1040G:p.Q347R,Acsm2:NM_001177978:exon7:c.A965G:p.Q322R,Acsm2:NM_146197:exon7:c.A965G:p.Q322R"	7qF2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.84977732	1	0.8765021	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	119786772	12A2p6	cell line	sgMsh2	119786772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	278	0	0	NA	exonic	Eri2	synonymous SNV	"Eri2:NM_001355104:exon8:c.T15C:p.G5G,Eri2:NM_027698:exon8:c.T699C:p.G233G"	7qF2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999982	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr7	120133911	12A2p6	cell line	sgMsh2	120133911	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	96	0	0	NA	exonic	Zp2	synonymous SNV	"Zp2:NM_001374631:exon15:c.C1806T:p.S602S,Zp2:NM_011775:exon15:c.C1806T:p.S602S"	7qF2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.958259531	1	0.9890594	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr7	123001854	12A2p6	cell line	sgMsh2	123001854	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.158	26	0	0	NA	exonic	Rbbp6	nonsynonymous SNV	Rbbp6:NM_011247:exon18:c.A5083C:p.S1695R	7qF2	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.714174556	1	0.6454698	TAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	126364445	12A2p6	cell line	sgMsh2	126364445	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	121	0	0	NA	exonic	Lat	nonsynonymous SNV	Lat:NM_010689:exon10:c.A584G:p.Y195C	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9881103	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	126495466	12A2p6	cell line	sgMsh2	126495466	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	59	0	0	NA	exonic	Atxn2l	nonsynonymous SNV	"Atxn2l:NM_001347658:exon14:c.G1600T:p.G534W,Atxn2l:NM_001361487:exon14:c.G1840T:p.G614W,Atxn2l:NM_183020:exon14:c.G1858T:p.G620W"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9819865	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	126830941	12A2p6	cell line	sgMsh2	126830941	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	54	0	0	NA	exonic	4930451I11Rik	nonsynonymous SNV	4930451I11Rik:NM_183131:exon2:c.T157A:p.S53T	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	127610760	12A2p6	cell line	sgMsh2	127610760	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	57	0	0	NA	exonic	Zfp629	nonsynonymous SNV	"Zfp629:NM_001362196:exon3:c.C1876A:p.P626T,Zfp629:NM_177226:exon3:c.C1876A:p.P626T,Zfp629:NM_001362197:exon4:c.C1876A:p.P626T"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	9.96E-07	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	127882424	12A2p6	cell line	sgMsh2	127882424	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	29	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.A3772C:p.K1258Q	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9387841	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	127905762	12A2p6	cell line	sgMsh2	127905762	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	252	0	0	NA	exonic	Bckdk	nonsynonymous SNV	Bckdk:NM_009739:exon5:c.T389C:p.I130T	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999947	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	128136314	12A2p6	cell line	sgMsh2	128136314	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	87	0	0	NA	exonic	Itgax	nonsynonymous SNV	Itgax:NM_021334:exon14:c.C1553A:p.P518H	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.7722117	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	128271182	12A2p6	cell line	sgMsh2	128271182	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	167	0	0	NA	exonic	Slc5a2	nonsynonymous SNV	Slc5a2:NM_133254:exon12:c.C1591T:p.L531F	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.809096491	1	0.540037	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	128389077	12A2p6	cell line	sgMsh2	128389077	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	58	0	0	NA	exonic	Rgs10	nonsynonymous SNV	Rgs10:NM_026418:exon4:c.A286C:p.T96P	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9812248	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	128442632	12A2p6	cell line	sgMsh2	128442632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	115	0	0	NA	exonic	Tial1	synonymous SNV	"Tial1:NM_001347640:exon12:c.T1029C:p.G343G,Tial1:NM_009383:exon12:c.T1080C:p.G360G,Tial1:NM_001347641:exon13:c.T912C:p.G304G"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr7	130735048	12A2p6	cell line	sgMsh2	130735048	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	137	0	0	NA	exonic	Tacc2	nonsynonymous SNV	"Tacc2:NM_001347637:exon5:c.A1672G:p.T558A,Tacc2:NM_021314:exon6:c.A1708G:p.T570A,Tacc2:NM_206856:exon9:c.A2038G:p.T680A,Tacc2:NM_001004468:exon10:c.A7159G:p.T2387A"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993173	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	131116967	12A2p6	cell line	sgMsh2	131116967	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	207	0	0	NA	exonic	Dmbt1	nonsynonymous SNV	"Dmbt1:NM_007769:exon45:c.T5383C:p.Y1795H,Dmbt1:NM_001347632:exon46:c.T5416C:p.Y1806H"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999643	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	133725212	12A2p6	cell line	sgMsh2	133725212	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	162	0	0	NA	exonic	Dhx32	nonsynonymous SNV	"Dhx32:NM_001286032:exon7:c.T1139C:p.M380T,Dhx32:NM_001286030:exon8:c.T1559C:p.M520T,Dhx32:NM_001286031:exon8:c.T1559C:p.M520T,Dhx32:NM_001357685:exon8:c.T1514C:p.M505T,Dhx32:NM_133941:exon8:c.T1559C:p.M520T"	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997621	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	134918308	12A2p6	cell line	sgMsh2	134918308	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	74	0	0	NA	exonic	Insyn2a	synonymous SNV	Insyn2a:NM_001143802:exon2:c.A492G:p.A164A	7qF3	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9903514	CTG	synonymous	TCCT	8	TCCTTCCT	NA
M8_p20	chr7	138229856	12A2p6	cell line	sgMsh2	138229856	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	60	0	0	NA	exonic	Tcerg1l	nonsynonymous SNV	Tcerg1l:NM_183289:exon9:c.T1391C:p.M464T	7qF4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9622537	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	140176933	12A2p6	cell line	sgMsh2	140176933	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	215	0	0	NA	exonic	Olfr523	stopgain	Olfr523:NM_146518:exon1:c.T830A:p.L277X	7qF4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999746	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	140812707	12A2p6	cell line	sgMsh2	140812707	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.42	69	0	0	NA	exonic	Zfp941	frameshift deletion	Zfp941:NM_001001180:exon3:c.738delA:p.G247Afs*27	7qF4	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
M8_p20	chr7	141466182	12A2p6	cell line	sgMsh2	141466182	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	44	0	0	NA	exonic	Cracr2b	frameshift deletion	Cracr2b:NM_001025103:exon10:c.1144delC:p.R384Dfs*83	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
M8_p20	chr7	141793390	12A2p6	cell line	sgMsh2	141793390	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	145	0	0	NA	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon9:c.A1102G:p.I368V	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9995128	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	141803386	12A2p6	cell line	sgMsh2	141803386	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	137	0	0	NA	exonic	Muc5ac	synonymous SNV	Muc5ac:NM_010844:exon26:c.T3396C:p.C1132C	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993173	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr7	143261306	12A2p6	cell line	sgMsh2	143261306	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	139	0	0	NA	exonic	Kcnq1	nonsynonymous SNV	Kcnq1:NM_008434:exon11:c.A1441G:p.T481A	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	2	1	1	0.9993725	AAC	nonsynonymous	AACA	8	AACAAACA	NA
M8_p20	chr7	144669624	12A2p6	cell line	sgMsh2	144669624	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	185	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon3:c.T160A:p.Y54N,Ano1:NM_178642:exon3:c.T160A:p.Y54N"	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999098	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr7	144862848	12A2p6	cell line	sgMsh2	144862848	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	215	0	0	NA	exonic	Fgf4	synonymous SNV	Fgf4:NM_010202:exon3:c.T516C:p.G172G	7qF5	chr7-9991672-145323643	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999746	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr8	3612982	12A2p6	cell line	sgMsh2	3612982	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	410	0	0	NA	exonic	Xab2	nonsynonymous SNV	Xab2:NM_026156:exon12:c.A1598G:p.Y533C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.881417965	1	0.9975379	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	3688331	12A2p6	cell line	sgMsh2	3688331	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	118	0	0	NA	exonic	Fcer2a	nonsynonymous SNV	"Fcer2a:NM_001253745:exon5:c.A275G:p.N92S,Fcer2a:NM_001253746:exon5:c.A275G:p.N92S,Fcer2a:NM_001253737:exon6:c.A338G:p.N113S,Fcer2a:NM_001253739:exon6:c.A338G:p.N113S,Fcer2a:NM_001253747:exon6:c.A221G:p.N74S,Fcer2a:NM_001253743:exon7:c.A260G:p.N87S,Fcer2a:NM_013517:exon7:c.A341G:p.N114S"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9979205	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	3688838	12A2p6	cell line	sgMsh2	3688838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	157	0	0	NA	exonic	Fcer2a	synonymous SNV	"Fcer2a:NM_001253737:exon4:c.A216G:p.L72L,Fcer2a:NM_001253739:exon4:c.A216G:p.L72L,Fcer2a:NM_001253746:exon4:c.A216G:p.L72L,Fcer2a:NM_001253747:exon4:c.A99G:p.L33L,Fcer2a:NM_001253743:exon5:c.A138G:p.L46L,Fcer2a:NM_013517:exon5:c.A219G:p.L73L"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997063	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr8	8622358	12A2p6	cell line	sgMsh2	8622358	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	495	0	0	NA	exonic	Efnb2	nonsynonymous SNV	"Efnb2:NM_001368299:exon3:c.A502G:p.T168A,Efnb2:NM_010111:exon4:c.A595G:p.T199A"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	1.19E-09	GTT	nonsynonymous	TTG	9	TTGTTGTTG	NA
M8_p20	chr8	10506522	12A2p6	cell line	sgMsh2	10506522	A	-	Deletion	Mutect2;Vardict	2	0.197	94	0	0	NA	exonic	Myo16	frameshift deletion	Myo16:NM_001319151:exon26:c.2982delA:p.K996Rfs*73	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.890458149	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr8	11661703	12A2p6	cell line	sgMsh2	11661703	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	263	0	0	NA	exonic	1700016D06Rik	synonymous SNV	1700016D06Rik:NM_024271:exon4:c.T312G:p.S104S	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999966	AAG	synonymous	NA	NA	NA	NA
M8_p20	chr8	12621869	12A2p6	cell line	sgMsh2	12621869	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	105	0	0	NA	exonic	Tubgcp3	nonsynonymous SNV	Tubgcp3:NM_198031:exon20:c.A2372G:p.Y791C	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9973721	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	13073683	12A2p6	cell line	sgMsh2	13073683	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	266	0	0	NA	exonic	Proz	nonsynonymous SNV	"Proz:NM_001357220:exon8:c.T743G:p.V248G,Proz:NM_025834:exon8:c.T953G:p.V318G"	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.999997	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	13405318	12A2p6	cell line	sgMsh2	13405318	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	69	0	0	NA	exonic	Grk1	synonymous SNV	Grk1:NM_011881:exon1:c.C201T:p.I67I	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	TCG	synonymous	NA	NA	NA	NA
M8_p20	chr8	13576361	12A2p6	cell line	sgMsh2	13576361	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	150	0	0	NA	exonic	Rasa3	nonsynonymous SNV	Rasa3:NM_009025:exon22:c.A2221G:p.M741V	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996054	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	15129170	12A2p6	cell line	sgMsh2	15129170	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	253	0	0	NA	exonic	Myom2	nonsynonymous SNV	Myom2:NM_008664:exon34:c.A4001C:p.K1334T	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999949	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	15915342	12A2p6	cell line	sgMsh2	15915342	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	199	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon62:c.A9668G:p.H3223R	8qA1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9994363	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	16346675	12A2p6	cell line	sgMsh2	16346675	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	194	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon10:c.A1240G:p.N414D	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999383	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	16698100	12A2p6	cell line	sgMsh2	16698100	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	31	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon5:c.C634A:p.L212I	8qA1.2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.943494	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	21084450	12A2p6	cell line	sgMsh2	21084450	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	159	0	0	NA	exonic	Defa25	synonymous SNV	Defa25:NM_007849:exon1:c.A9G:p.T3T	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.99973	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr8	22243375	12A2p6	cell line	sgMsh2	22243375	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	79	0	0	NA	exonic	Thsd1	nonsynonymous SNV	"Thsd1:NM_001205253:exon2:c.A254C:p.Q85P,Thsd1:NM_001293688:exon3:c.A437C:p.Q146P,Thsd1:NM_019576:exon3:c.A437C:p.Q146P"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9846626	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	22940316	12A2p6	cell line	sgMsh2	22940316	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	237	0	0	NA	exonic	Kat6a	nonsynonymous SNV	"Kat6a:NM_001364449:exon17:c.A5686G:p.M1896V,Kat6a:NM_001081149:exon18:c.A5686G:p.M1896V"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999899	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	24742120	12A2p6	cell line	sgMsh2	24742120	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	283	0	0	NA	exonic	Adam5	nonsynonymous SNV	"Adam5:NM_001272058:exon20:c.A2221G:p.N741D,Adam5:NM_007401:exon20:c.A2221G:p.N741D"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999986	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	24921309	12A2p6	cell line	sgMsh2	24921309	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.33	218	0	0	NA	exonic	Adam32	frameshift deletion	"Adam32:NM_001293693:exon5:c.335delT:p.L112Pfs*6,Adam32:NM_153397:exon5:c.335delT:p.L112Pfs*6"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GAG	frameshift	NA	NA	NA	-1
M8_p20	chr8	24924083	12A2p6	cell line	sgMsh2	24924083	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	108	0	0	NA	exonic	Adam32	nonsynonymous SNV	"Adam32:NM_001293693:exon3:c.C185T:p.T62I,Adam32:NM_153397:exon3:c.C185T:p.T62I"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9976838	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	25594044	12A2p6	cell line	sgMsh2	25594044	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	189	0	0	NA	exonic	Letm2	nonsynonymous SNV	"Letm2:NM_001364069:exon3:c.A170G:p.Y57C,Letm2:NM_173012:exon3:c.A170G:p.Y57C"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999238	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	27151972	12A2p6	cell line	sgMsh2	27151972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	155	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.A2798G:p.N933S	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9995175	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	27152371	12A2p6	cell line	sgMsh2	27152371	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	73	0	0	NA	exonic	Rab11fip1	nonsynonymous SNV	Rab11fip1:NM_001080813:exon4:c.C2399A:p.P800H	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	28760836	12A2p6	cell line	sgMsh2	28760836	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	70	0	0	NA	exonic	Unc5d	nonsynonymous SNV	"Unc5d:NM_001347499:exon6:c.A802G:p.R268G,Unc5d:NM_153135:exon6:c.A802G:p.R268G"	8qA2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9885981	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	34851648	12A2p6	cell line	sgMsh2	34851648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	122	0	0	NA	exonic	Tnks	synonymous SNV	Tnks:NM_175091:exon16:c.C2478T:p.T826T	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9987155	GGG	synonymous	NA	NA	NA	NA
M8_p20	chr8	35588770	12A2p6	cell line	sgMsh2	35588770	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.118	67	0	0	NA	exonic	Mfhas1	nonsynonymous SNV	"Mfhas1:NM_001081279:exon1:c.T398C:p.L133P,Mfhas1:NM_001364259:exon1:c.T398C:p.L133P"	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.533370871	2	0.6918707	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	39605972	12A2p6	cell line	sgMsh2	39605972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	144	0	0	NA	exonic	Msr1	synonymous SNV	Msr1:NM_031195:exon9:c.A1065G:p.X355X	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.632812898	2	0.9888466	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr8	41290785	12A2p6	cell line	sgMsh2	41290785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	296	0	0	NA	exonic	Pcm1	synonymous SNV	Pcm1:NM_023662:exon21:c.T3468C:p.P1156P	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999992	CTA	synonymous	NA	NA	NA	NA
M8_p20	chr8	43520094	12A2p6	cell line	sgMsh2	43520094	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	803	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.T1870A:p.L624I	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	1	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	43674656	12A2p6	cell line	sgMsh2	43674656	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	649	0	0	NA	exonic	Gm5347	nonsynonymous SNV	Gm5347:NM_001079931:exon3:c.A1306C:p.S436R	8qA4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	45017632	12A2p6	cell line	sgMsh2	45017632	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	157	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon7:c.A4597G:p.T1533A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.745815201	2	0.9148477	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	46035659	12A2p6	cell line	sgMsh2	46035659	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	170	0	0	NA	exonic	Snx25	synonymous SNV	"Snx25:NM_001372342:exon17:c.T2658C:p.S886S,Snx25:NM_001372343:exon17:c.T2652C:p.S884S,Snx25:NM_207213:exon17:c.T2220C:p.S740S"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998302	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr8	46586648	12A2p6	cell line	sgMsh2	46586648	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	152	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon10:c.A1091G:p.Q364R	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	TTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	46599811	12A2p6	cell line	sgMsh2	46599811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	189	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon6:c.T464C:p.V155A	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999238	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	47524990	12A2p6	cell line	sgMsh2	47524990	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	90	0	0	NA	exonic	Trappc11	stopgain	Trappc11:NM_177240:exon6:c.641delT:p.L214fs*0	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	nonsynonymous	A	5	AAAAA	-1
M8_p20	chr8	48287969	12A2p6	cell line	sgMsh2	48287969	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	131	0	0	NA	exonic	Tenm3	nonsynonymous SNV	"Tenm3:NM_001145937:exon18:c.G3451T:p.G1151C,Tenm3:NM_011857:exon19:c.G3478T:p.G1160C"	8qB1.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9991209	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	53520244	12A2p6	cell line	sgMsh2	53520244	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.224	142	0	0	NA	exonic;splicing	Aga;Aga	frameshift deletion	Aga:NM_001005847:exon7:c.706delG:p.D237Ifs*36	8qB1.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	AGG	frameshift	NA	NA	NA	-1
M8_p20	chr8	56110553	12A2p6	cell line	sgMsh2	56110553	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	282	0	0	NA	exonic	Glra3	nonsynonymous SNV	"Glra3:NM_001368774:exon8:c.A1034G:p.K345R,Glra3:NM_080438:exon8:c.A1034G:p.K345R"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999985	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	56319021	12A2p6	cell line	sgMsh2	56319021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	178	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.T527C:p.V176A	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8539973	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	56319032	12A2p6	cell line	sgMsh2	56319032	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	188	0	0	NA	exonic	Hpgd	nonsynonymous SNV	Hpgd:NM_008278:exon6:c.G538A:p.V180I	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999205	TGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	57538147	12A2p6	cell line	sgMsh2	57538147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	176	0	0	NA	exonic	Galnt7	nonsynonymous SNV	"Galnt7:NM_001167981:exon8:c.G1328A:p.R443H,Galnt7:NM_144731:exon8:c.G1328A:p.R443H"	8qB2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998682	ACG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	61049897	12A2p6	cell line	sgMsh2	61049897	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	248	0	0	NA	exonic	Nek1	synonymous SNV	"Nek1:NM_001293639:exon15:c.T1302C:p.D434D,Nek1:NM_001293637:exon16:c.T1377C:p.D459D,Nek1:NM_001293638:exon16:c.T1377C:p.D459D,Nek1:NM_175089:exon16:c.T1377C:p.D459D"	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9999704	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr8	65000195	12A2p6	cell line	sgMsh2	65000195	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	54	0	0	NA	exonic	Trim60	stoploss	Trim60:NM_153097:exon2:c.A1401C:p.X467Y	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	66480367	12A2p6	cell line	sgMsh2	66480367	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	169	0	0	NA	exonic	Tma16	nonsynonymous SNV	"Tma16:NM_001357208:exon5:c.C172T:p.R58W,Tma16:NM_025465:exon5:c.C361T:p.R121W"	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.926618886	1	0.9953838	CGC	nonsynonymous	CCGCTC	13	CCGCTCCCGCTCC	NA
M8_p20	chr8	66879643	12A2p6	cell line	sgMsh2	66879643	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	197	0	0	NA	exonic	Naf1	nonsynonymous SNV	Naf1:NM_001163564:exon4:c.A982G:p.T328A	8qB3.1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.9990437	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	69765462	12A2p6	cell line	sgMsh2	69765462	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	271	0	0	NA	exonic	Zfp866	nonsynonymous SNV	Zfp866:NM_177899:exon4:c.T1507C:p.Y503H	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999976	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	69901579	12A2p6	cell line	sgMsh2	69901579	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.159	120	0	0	NA	exonic	Ndufa13	synonymous SNV	"Ndufa13:NM_001382215:exon2:c.C57T:p.I19I,Ndufa13:NM_023312:exon2:c.C57T:p.I19I"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.718694648	2	0.9097856	CGA	synonymous	NA	NA	NA	NA
M8_p20	chr8	70181443	12A2p6	cell line	sgMsh2	70181443	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	92	0	0	NA	exonic	Tmem161a	nonsynonymous SNV	"Tmem161a:NM_001293797:exon10:c.A647G:p.Y216C,Tmem161a:NM_145597:exon11:c.A1103G:p.Y368C"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	70914549	12A2p6	cell line	sgMsh2	70914549	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	104	0	0	NA	exonic	Map1s	synonymous SNV	Map1s:NM_173013:exon5:c.T2097C:p.P699P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9972592	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr8	71395125	12A2p6	cell line	sgMsh2	71395125	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	217	0	0	NA	exonic	Ushbp1	nonsynonymous SNV	Ushbp1:NM_181418:exon3:c.A101C:p.N34T	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999766	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	71710416	12A2p6	cell line	sgMsh2	71710416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	94	0	0	NA	exonic	Fcho1	synonymous SNV	Fcho1:NM_028715:exon23:c.A1968G:p.P656P	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.78649603	1	9.47E-05	GTG	synonymous	GGT	11	GGTGGTGGTGG	NA
M8_p20	chr8	72451389	12A2p6	cell line	sgMsh2	72451389	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	253	0	0	NA	exonic	1700030K09Rik	nonsynonymous SNV	1700030K09Rik:NM_028170:exon4:c.A1043C:p.D348A	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.827176859	1	0.6615202	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	72461491	12A2p6	cell line	sgMsh2	72461491	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	321	0	0	NA	exonic	Cherp	nonsynonymous SNV	"Cherp:NM_001359024:exon17:c.C2754A:p.N918K,Cherp:NM_138585:exon17:c.C2721A:p.N907K"	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999997	AGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	72495807	12A2p6	cell line	sgMsh2	72495807	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	75	0	0	NA	exonic	Med26	nonsynonymous SNV	Med26:NM_027485:exon3:c.A1447T:p.S483C	8qB3.3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9907462	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	79185668	12A2p6	cell line	sgMsh2	79185668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	114	0	0	NA	exonic	Zfp827	synonymous SNV	"Zfp827:NM_001294279:exon12:c.A2922G:p.S974S,Zfp827:NM_178267:exon12:c.A2922G:p.S974S"	8qC1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9982008	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr8	83259314	12A2p6	cell line	sgMsh2	83259314	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	149	0	0	NA	exonic	Tbc1d9	nonsynonymous SNV	"Tbc1d9:NM_027758:exon12:c.T1748C:p.I583T,Tbc1d9:NM_001111304:exon15:c.T2447C:p.I816T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995884	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	83570856	12A2p6	cell line	sgMsh2	83570856	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.16	131	0	0	NA	exonic	Ndufb7	nonsynonymous SNV	Ndufb7:NM_025843:exon2:c.A139G:p.M47V	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.72321474	2	0.9246932	GAT	nonsynonymous	GATG	8	GATGGATG	NA
M8_p20	chr8	83725234	12A2p6	cell line	sgMsh2	83725234	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	175	0	0	NA	exonic	Adgre5	nonsynonymous SNV	"Adgre5:NM_001163029:exon12:c.T1406C:p.M469T,Adgre5:NM_001163031:exon12:c.T1400C:p.M467T,Adgre5:NM_001163030:exon13:c.T1553C:p.M518T,Adgre5:NM_011925:exon14:c.T1688C:p.M563T"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998625	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	84566002	12A2p6	cell line	sgMsh2	84566002	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.116	39	0	0	NA	exonic	Cacna1a	synonymous SNV	"Cacna1a:NM_001252059:exon19:c.G2877A:p.R959R,Cacna1a:NM_001252060:exon20:c.G3018A:p.R1006R,Cacna1a:NM_001252061:exon20:c.G3018A:p.R1006R,Cacna1a:NM_007578:exon20:c.G3018A:p.R1006R"	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.524330687	2	0.6619438	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr8	84662473	12A2p6	cell line	sgMsh2	84662473	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	42	0	0	NA	exonic	Ier2	synonymous SNV	Ier2:NM_010499:exon1:c.C279T:p.P93P	8qC2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9637689	TGG	synonymous	NA	NA	NA	NA
M8_p20	chr8	85086818	12A2p6	cell line	sgMsh2	85086818	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	61	0	0	NA	exonic	Man2b1	nonsynonymous SNV	Man2b1:NM_010764:exon5:c.T638G:p.F213C	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9834199	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	86505433	12A2p6	cell line	sgMsh2	86505433	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	231	0	0	NA	exonic	Abcc12	nonsynonymous SNV	Abcc12:NM_172912:exon28:c.T3995A:p.L1332Q	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.777455846	2	0.09271568	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	88731678	12A2p6	cell line	sgMsh2	88731678	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	67	0	0	NA	exonic	Cyld	nonsynonymous SNV	"Cyld:NM_001276279:exon8:c.T1130C:p.F377S,Cyld:NM_173369:exon9:c.T1676C:p.F559S,Cyld:NM_001128170:exon10:c.T1685C:p.F562S,Cyld:NM_001128171:exon10:c.T1676C:p.F559S"	8qC3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9870797	TTT	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr8	90933086	12A2p6	cell line	sgMsh2	90933086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	105	0	0	NA	exonic	Chd9	nonsynonymous SNV	"Chd9:NM_001310530:exon1:c.C673T:p.L225F,Chd9:NM_177224:exon3:c.C673T:p.L225F"	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9973721	TCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	91248769	12A2p6	cell line	sgMsh2	91248769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	387	0	0	NA	exonic	Rpgrip1l	synonymous SNV	Rpgrip1l:NM_173431:exon22:c.A3219G:p.R1073R	8qC4	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	1.90E-08	ATC	synonymous	NA	NA	NA	NA
M8_p20	chr8	92873078	12A2p6	cell line	sgMsh2	92873078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	221	0	0	NA	exonic	Lpcat2	nonsynonymous SNV	Lpcat2:NM_173014:exon5:c.A673G:p.N225D	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9989154	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	93366760	12A2p6	cell line	sgMsh2	93366760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	158	0	0	NA	exonic	Ces1h	synonymous SNV	Ces1h:NM_001370830:exon5:c.T618C:p.I206I	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	CAA	synonymous	NA	NA	NA	NA
M8_p20	chr8	94064204	12A2p6	cell line	sgMsh2	94064204	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	82	0	0	NA	exonic	Ogfod1	nonsynonymous SNV	"Ogfod1:NM_001093757:exon12:c.A1373G:p.N458S,Ogfod1:NM_177767:exon13:c.A1502G:p.N501S"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.885938057	1	0.9245709	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	94526025	12A2p6	cell line	sgMsh2	94526025	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	54	0	0	NA	exonic	Nlrc5	nonsynonymous SNV	Nlrc5:NM_001033207:exon49:c.A5698T:p.S1900C	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	94575821	12A2p6	cell line	sgMsh2	94575822	AG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	23	0	0	NA	exonic	Psme3ip1	stopgain	"Psme3ip1:NM_001363456:exon8:c.580_581del:p.L194Efs*28,Psme3ip1:NM_001363457:exon8:c.578_579del:p.S193fs*0,Psme3ip1:NM_028221:exon8:c.580_581del:p.L194Efs*28"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAG	nonsynonymous	NA	NA	NA	-2
M8_p20	chr8	94587329	12A2p6	cell line	sgMsh2	94587329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	114	0	0	NA	exonic	Psme3ip1	nonsynonymous SNV	"Psme3ip1:NM_001363456:exon5:c.T343C:p.Y115H,Psme3ip1:NM_001363457:exon5:c.T343C:p.Y115H,Psme3ip1:NM_028221:exon5:c.T343C:p.Y115H"	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.890458149	1	0.9539428	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	95455972	12A2p6	cell line	sgMsh2	95455972	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	133	0	0	NA	exonic	Csnk2a2	nonsynonymous SNV	Csnk2a2:NM_009974:exon10:c.A862G:p.S288G	8qC5	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.999192	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	99171319	12A2p6	cell line	sgMsh2	99171319	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	425	0	0	NA	exonic	Cdh8	nonsynonymous SNV	"Cdh8:NM_001039154:exon8:c.T1361C:p.L454P,Cdh8:NM_001285913:exon8:c.T1361C:p.L454P,Cdh8:NM_001285914:exon8:c.T1361C:p.L454P,Cdh8:NM_007667:exon8:c.T1361C:p.L454P"	8qD1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	4.62E-09	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	104292950	12A2p6	cell line	sgMsh2	104292950	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	251	0	0	NA	exonic	Cmtm2a	nonsynonymous SNV	Cmtm2a:NM_027022:exon1:c.G107A:p.S36N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999944	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	104442531	12A2p6	cell line	sgMsh2	104442531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.406	50	0	0	NA	exonic	Dync1li2	nonsynonymous SNV	Dync1li2:NM_001013380:exon2:c.G124A:p.E42K	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9738829	TCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	104527438	12A2p6	cell line	sgMsh2	104527438	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	173	0	0	NA	exonic	Nae1	synonymous SNV	Nae1:NM_144931:exon5:c.A261G:p.Q87Q	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9965671	CTT	synonymous	NA	NA	NA	NA
M8_p20	chr8	104837838	12A2p6	cell line	sgMsh2	104837838	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	568	0	0	NA	exonic	Ces2b	synonymous SNV	Ces2b:NM_198171:exon11:c.A1479G:p.R493R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	1.01E-09	GAC	synonymous	NA	NA	NA	NA
M8_p20	chr8	105178615	12A2p6	cell line	sgMsh2	105178615	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	152	0	0	NA	exonic	Cbfb	nonsynonymous SNV	"Cbfb:NM_001161457:exon3:c.A188T:p.N63I,Cbfb:NM_001161458:exon3:c.A188T:p.N63I,Cbfb:NM_022309:exon3:c.A188T:p.N63I"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996373	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105386798	12A2p6	cell line	sgMsh2	105386798	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.253	139	0	0	NA	exonic	Kctd19	frameshift deletion	"Kctd19:NM_001301173:exon12:c.2173delA:p.R725Efs*4,Kctd19:NM_177791:exon13:c.2242delA:p.R748Efs*4"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr8	105395284	12A2p6	cell line	sgMsh2	105395284	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	58	0	0	NA	exonic	Kctd19	nonsynonymous SNV	"Kctd19:NM_001301173:exon4:c.G630T:p.E210D,Kctd19:NM_177791:exon4:c.G630T:p.E210D"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9812248	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105698328	12A2p6	cell line	sgMsh2	105698328	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	159	0	0	NA	exonic	Acd	synonymous SNV	"Acd:NM_001348349:exon9:c.G606A:p.R202R,Acd:NM_001012638:exon11:c.G1179A:p.R393R"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.931138978	1	0.9951991	GCC	synonymous	NA	NA	NA	NA
M8_p20	chr8	105702968	12A2p6	cell line	sgMsh2	105702968	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	107	0	0	NA	exonic	Pard6a	nonsynonymous SNV	"Pard6a:NM_001047435:exon3:c.T644C:p.L215P,Pard6a:NM_001047436:exon3:c.T599C:p.L200P,Pard6a:NM_001286344:exon3:c.T119C:p.L40P,Pard6a:NM_001286345:exon3:c.T557C:p.L186P,Pard6a:NM_019695:exon3:c.T647C:p.L216P"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9975842	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105773073	12A2p6	cell line	sgMsh2	105773073	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	203	0	0	NA	exonic	Ranbp10	frameshift deletion	Ranbp10:NM_145824:exon11:c.1439delA:p.K480Sfs*40	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CTT	frameshift	NA	NA	NA	-1
M8_p20	chr8	105847048	12A2p6	cell line	sgMsh2	105847048	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.249	144	0	0	NA	exonic	Cenpt	frameshift insertion	Cenpt:NM_177150:exon8:c.848_849insA:p.G284Wfs*2	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAG	frameshift	NA	NA	NA	1
M8_p20	chr8	105878842	12A2p6	cell line	sgMsh2	105878842	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	277	0	0	NA	exonic	Nutf2	nonsynonymous SNV	"Nutf2:NM_001357229:exon5:c.T308C:p.F103S,Nutf2:NM_001357230:exon5:c.T308C:p.F103S,Nutf2:NM_026532:exon5:c.T308C:p.F103S"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999981	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105913500	12A2p6	cell line	sgMsh2	105913500	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.18	192	0	0	NA	exonic	Pskh1	stopgain	Pskh1:NM_173432:exon2:c.C811T:p.R271X	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.813616583	1	0.5466184	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105937334	12A2p6	cell line	sgMsh2	105937334	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	102	0	0	NA	exonic	Psmb10	nonsynonymous SNV	Psmb10:NM_013640:exon4:c.T290C:p.M97T	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9970186	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	105949248	12A2p6	cell line	sgMsh2	105949248	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	141	0	0	NA	exonic	Slc12a4	synonymous SNV	"Slc12a4:NM_001253804:exon13:c.C1644G:p.G548G,Slc12a4:NM_009195:exon13:c.C1638G:p.G546G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994233	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr8	106539084	12A2p6	cell line	sgMsh2	106539084	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	151	0	0	NA	exonic	Cdh3	nonsynonymous SNV	"Cdh3:NM_001037809:exon7:c.A758G:p.E253G,Cdh3:NM_007665:exon7:c.A755G:p.E252G"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996217	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	107367956	12A2p6	cell line	sgMsh2	107367956	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	86	0	0	NA	exonic	Nfat5	nonsynonymous SNV	"Nfat5:NM_001286260:exon12:c.A2774G:p.Q925R,Nfat5:NM_018823:exon13:c.A2828G:p.Q943R,Nfat5:NM_133957:exon14:c.A2546G:p.Q849R"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9941616	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	108949105	12A2p6	cell line	sgMsh2	108949105	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	111	0	0	NA	exonic	Zfhx3	synonymous SNV	Zfhx3:NM_007496:exon9:c.A6786C:p.R2262R	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9979585	GAG	synonymous	NA	NA	NA	NA
M8_p20	chr8	109551631	12A2p6	cell line	sgMsh2	109551631	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	170	0	0	NA	exonic	Dhx38	nonsynonymous SNV	Dhx38:NM_178380:exon25:c.G3412A:p.D1138N	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998302	TCC	nonsynonymous	TCCA	8	TCCATCCA	NA
M8_p20	chr8	109623883	12A2p6	cell line	sgMsh2	109623883	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	443	0	0	NA	exonic	Pkd1l3	synonymous SNV	"Pkd1l3:NM_001039700:exon5:c.C1359T:p.D453D,Pkd1l3:NM_001286454:exon5:c.C1359T:p.D453D,Pkd1l3:NM_181544:exon5:c.C1359T:p.D453D"	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	2.69E-09	ACA	synonymous	NA	NA	NA	NA
M8_p20	chr8	110505241	12A2p6	cell line	sgMsh2	110505241	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	217	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon32:c.A4834T:p.I1612F	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	0.9980003	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	110580829	12A2p6	cell line	sgMsh2	110580829	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	128	0	0	NA	exonic	Hydin	nonsynonymous SNV	Hydin:NM_172916:exon70:c.A11839G:p.M3947V	8qD3	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.985380084	1	0.9983682	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	110742366	12A2p6	cell line	sgMsh2	110742366	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	73	0	0	NA	exonic	Il34	synonymous SNV	Il34:NM_001135100:exon7:c.T621C:p.C207C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9899398	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr8	111045582	12A2p6	cell line	sgMsh2	111045582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	151	0	0	NA	exonic	Aars	nonsynonymous SNV	Aars:NM_146217:exon11:c.A1403G:p.Y468C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.678013819	2	0.9919386	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	111132877	12A2p6	cell line	sgMsh2	111132877	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	228	0	0	NA	exonic	Pdpr	nonsynonymous SNV	Pdpr:NM_198308:exon17:c.T2050C:p.Y684H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999853	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	111689328	12A2p6	cell line	sgMsh2	111689328	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	55	0	0	NA	exonic	Ctrb1	nonsynonymous SNV	Ctrb1:NM_025583:exon3:c.T233G:p.V78G	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9787452	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	112665175	12A2p6	cell line	sgMsh2	112665175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	76	0	0	NA	exonic	Cntnap4	nonsynonymous SNV	Cntnap4:NM_130457:exon3:c.A271G:p.M91V	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.922098794	1	9.91E-07	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	117504368	12A2p6	cell line	sgMsh2	117504368	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.291	73	0	0	NA	exonic	Plcg2	nonsynonymous SNV	Plcg2:NM_172285:exon2:c.G188A:p.G63D	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9899398	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	121801210	12A2p6	cell line	sgMsh2	121801210	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	86	0	0	NA	exonic	Klhdc4	nonsynonymous SNV	Klhdc4:NM_145605:exon8:c.T764C:p.V255A	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9941616	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	122439654	12A2p6	cell line	sgMsh2	122439654	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	92	0	0	NA	exonic	Mvd	nonsynonymous SNV	Mvd:NM_138656:exon3:c.G243T:p.Q81H	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9954612	CCT	nonsynonymous	CAGG	9	CAGGCAGGC	NA
M8_p20	chr8	122456276	12A2p6	cell line	sgMsh2	122456276	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	96	0	0	NA	exonic	Snai3	nonsynonymous SNV	Snai3:NM_013914:exon2:c.G529A:p.A177T	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9699982	GCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	122571834	12A2p6	cell line	sgMsh2	122571834	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.143	37	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon8:c.G1297A:p.A433T	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.646373174	2	0.5685374	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	122572650	12A2p6	cell line	sgMsh2	122572650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	75	0	0	NA	exonic	Cdt1	nonsynonymous SNV	Cdt1:NM_026014:exon10:c.T1670C:p.L557P	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.93565907	1	0.9677951	CTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	123233418	12A2p6	cell line	sgMsh2	123233418	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	66	0	0	NA	exonic	Spata2l	synonymous SNV	"Spata2l:NM_001357300:exon2:c.C1131A:p.R377R,Spata2l:NM_001357302:exon2:c.C753A:p.R251R,Spata2l:NM_001357301:exon3:c.C1131A:p.R377R,Spata2l:NM_030176:exon3:c.C1131A:p.R377R"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9764666	GGC	synonymous	NA	NA	NA	NA
M8_p20	chr8	123389792	12A2p6	cell line	sgMsh2	123389792	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	30	0	0	NA	exonic	Tcf25	synonymous SNV	"Tcf25:NM_001286362:exon6:c.T750C:p.I250I,Tcf25:NM_001286363:exon6:c.T750C:p.I250I,Tcf25:NM_001359076:exon6:c.T750C:p.I250I,Tcf25:NM_001037877:exon7:c.T825C:p.I275I,Tcf25:NM_001037878:exon7:c.T825C:p.I275I,Tcf25:NM_001359075:exon7:c.T825C:p.I275I,Tcf25:NM_025804:exon7:c.T825C:p.I275I"	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	2	1	1	0.9411846	TTG	synonymous	NA	NA	NA	NA
M8_p20	chr8	123418184	12A2p6	cell line	sgMsh2	123418184	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	98	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon2:c.A149G:p.Y50C	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9964726	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	123420714	12A2p6	cell line	sgMsh2	123420714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	189	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.T385C:p.C129R	8qE1	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999238	CTG	nonsynonymous	CTGC	8	CTGCCTGC	NA
M8_p20	chr8	123938180	12A2p6	cell line	sgMsh2	123938180	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.26	133	0	0	NA	exonic	Nup133	nonsynonymous SNV	Nup133:NM_172288:exon6:c.G771T:p.R257S	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.999192	CCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	123962010	12A2p6	cell line	sgMsh2	123962010	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	176	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon8:c.A1526G:p.Y509C	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998682	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	123968099	12A2p6	cell line	sgMsh2	123968099	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	107	0	0	NA	exonic	Abcb10	nonsynonymous SNV	Abcb10:NM_019552:exon4:c.A853G:p.S285G	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9975842	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	124028933	12A2p6	cell line	sgMsh2	124028933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	173	0	0	NA	exonic	Urb2	nonsynonymous SNV	"Urb2:NM_001029876:exon4:c.T1378C:p.Y460H,Urb2:NM_001368414:exon4:c.T1378C:p.Y460H"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.732254925	2	0.9673123	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	124679036	12A2p6	cell line	sgMsh2	124679036	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.21	152	0	0	NA	exonic	Ttc13	nonsynonymous SNV	"Ttc13:NM_001357356:exon13:c.T1517C:p.V506A,Ttc13:NM_001373941:exon13:c.T1517C:p.V506A,Ttc13:NM_001357357:exon14:c.T1583C:p.V528A,Ttc13:NM_001357355:exon15:c.T1745C:p.V582A,Ttc13:NM_001373940:exon15:c.T1745C:p.V582A,Ttc13:NM_001373939:exon17:c.T1904C:p.V635A,Ttc13:NM_001373943:exon17:c.T1904C:p.V635A"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9972389	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	125671610	12A2p6	cell line	sgMsh2	125671610	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	109	0	0	NA	exonic	Map10	stopgain	Map10:NM_028908:exon1:c.G1741T:p.E581X	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.989235	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	126394579	12A2p6	cell line	sgMsh2	126394579	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	70	0	0	NA	exonic	Slc35f3	nonsynonymous SNV	"Slc35f3:NM_175434:exon7:c.A1178C:p.K393T,Slc35f3:NM_001363500:exon8:c.A1328C:p.K443T"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.619252621	2	0.8796724	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr8	127415769	12A2p6	cell line	sgMsh2	127415769	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	89	0	0	NA	exonic	Pard3	synonymous SNV	"Pard3:NM_001013581:exon17:c.T2400C:p.V800V,Pard3:NM_001309392:exon18:c.T2760C:p.V920V,Pard3:NM_001309391:exon19:c.T2805C:p.V935V,Pard3:NM_001363431:exon19:c.T2715C:p.V905V,Pard3:NM_001363432:exon19:c.T2811C:p.V937V,Pard3:NM_033620:exon19:c.T2802C:p.V934V"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	1	1	0.9948521	TTG	synonymous	TGA	9	TGATGATGA	NA
M8_p20	chr8	127474586	12A2p6	cell line	sgMsh2	127474586	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	84	0	0	NA	exonic	Pard3	nonsynonymous SNV	"Pard3:NM_001309392:exon21:c.G3339T:p.K1113N,Pard3:NM_001309391:exon22:c.G3384T:p.K1128N,Pard3:NM_001363431:exon22:c.G3294T:p.K1098N,Pard3:NM_001363432:exon22:c.G3390T:p.K1130N,Pard3:NM_033620:exon22:c.G3381T:p.K1127N"	8qE2	chr8-3154030-129138455	4	2	2	0.9	4.068082914	NA	1	0.632812898	2	0.9269155	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	3343047	12A2p6	cell line	sgMsh2	3343047	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	134	0	0	NA	exonic	Alkbh8	nonsynonymous SNV	Alkbh8:NM_026303:exon3:c.T162G:p.N54K	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9982167	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	3634874	12A2p6	cell line	sgMsh2	3634874	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	282	0	0	NA	exonic	Gucy1a2	nonsynonymous SNV	Gucy1a2:NM_001033322:exon4:c.G917A:p.G306D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999829	GGT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	4330693	12A2p6	cell line	sgMsh2	4330693	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	267	0	0	NA	exonic	Kbtbd3	nonsynonymous SNV	"Kbtbd3:NM_001164574:exon3:c.C1066A:p.L356I,Kbtbd3:NM_026962:exon4:c.C1066A:p.L356I"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9999972	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	4664947	12A2p6	cell line	sgMsh2	4664947	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	126	0	0	NA	exonic	Gria4	nonsynonymous SNV	"Gria4:NM_001113180:exon4:c.T308C:p.V103A,Gria4:NM_001113181:exon4:c.T308C:p.V103A,Gria4:NM_019691:exon4:c.T308C:p.V103A"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.7758204	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	5350422	12A2p6	cell line	sgMsh2	5350422	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	221	0	0	NA	exonic	Casp12	synonymous SNV	Casp12:NM_009808:exon4:c.T342C:p.D114D	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999802	ATG	synonymous	GAT	8	GATGATGA	NA
M8_p20	chr9	7002629	12A2p6	cell line	sgMsh2	7002629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	262	0	0	NA	exonic	Dync2h1	nonsynonymous SNV	Dync2h1:NM_029851:exon78:c.T11417C:p.L3806P	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.953739439	1	0.9999148	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	7132018	12A2p6	cell line	sgMsh2	7132018	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	85	0	0	NA	exonic	Dync2h1	synonymous SNV	Dync2h1:NM_029851:exon32:c.G4788A:p.L1596L	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.8738716	TCA	synonymous	NA	NA	NA	NA
M8_p20	chr9	7206772	12A2p6	cell line	sgMsh2	7206772	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	299	0	0	NA	exonic	Dcun1d5	nonsynonymous SNV	Dcun1d5:NM_001357483:exon7:c.A608G:p.H203R	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999993	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	9180046	12A2p6	cell line	sgMsh2	9180046	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	166	0	0	NA	exonic	Arhgap42	synonymous SNV	"Arhgap42:NM_001372563:exon2:c.T231C:p.T77T,Arhgap42:NM_001372564:exon2:c.T231C:p.T77T,Arhgap42:NM_001372565:exon2:c.T231C:p.T77T,Arhgap42:NM_001372566:exon2:c.T231C:p.T77T,Arhgap42:NM_001372567:exon2:c.T231C:p.T77T,Arhgap42:NM_001372568:exon2:c.T231C:p.T77T,Arhgap42:NM_001372569:exon2:c.T231C:p.T77T,Arhgap42:NM_027823:exon2:c.T231C:p.T77T"	9qA1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.999799	CAG	synonymous	TCA	9	TCATCATCA	NA
M8_p20	chr9	14811837	12A2p6	cell line	sgMsh2	14811837	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.209	168	0	0	NA	exonic	Mre11a	nonsynonymous SNV	"Mre11a:NM_001310728:exon10:c.A1025T:p.Y342F,Mre11a:NM_018736:exon11:c.A1106T:p.Y369F"	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.944699254	1	0.997872	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	15968254	12A2p6	cell line	sgMsh2	15968254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	142	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon15:c.C9956T:p.A3319V	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9994471	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	18444876	12A2p6	cell line	sgMsh2	18444876	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.276	107	0	0	NA	exonic	Mbd3l2	frameshift deletion	Mbd3l2:NM_144934:exon3:c.496delT:p.F167Sfs*5	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
M8_p20	chr9	18815673	12A2p6	cell line	sgMsh2	18815673	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	115	0	0	NA	exonic	Olfr828	nonsynonymous SNV	Olfr828:NM_146605:exon1:c.A620G:p.N207S	9qA2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	19584788	12A2p6	cell line	sgMsh2	19584788	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	209	0	0	NA	exonic	Olfr855	nonsynonymous SNV	Olfr855:NM_146524:exon1:c.A250G:p.N84D	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.9280545	TAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	21003284	12A2p6	cell line	sgMsh2	21003284	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	87	0	0	NA	exonic	Mrpl4	nonsynonymous SNV	"Mrpl4:NM_001357899:exon3:c.A155T:p.E52V,Mrpl4:NM_023167:exon3:c.A155T:p.E52V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9944015	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	21030349	12A2p6	cell line	sgMsh2	21030349	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	113	0	0	NA	exonic	Icam4	synonymous SNV	Icam4:NM_001364509:exon2:c.C783A:p.T261T	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9981234	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	21124417	12A2p6	cell line	sgMsh2	21124417	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	88	0	0	NA	exonic	Tyk2	nonsynonymous SNV	"Tyk2:NM_001205312:exon5:c.T468A:p.F156L,Tyk2:NM_018793:exon5:c.T468A:p.F156L"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9897371	CAA	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr9	21244233	12A2p6	cell line	sgMsh2	21244233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	70	0	0	NA	exonic	S1pr5	nonsynonymous SNV	S1pr5:NM_053190:exon3:c.A896G:p.N299S	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.836217043	1	0.8090128	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	21337927	12A2p6	cell line	sgMsh2	21337927	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	105	0	0	NA	exonic	Slc44a2	nonsynonymous SNV	Slc44a2:NM_152808:exon1:c.T2C:p.M1T	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.845257228	1	0.8403773	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	21467657	12A2p6	cell line	sgMsh2	21467657	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	69	0	0	NA	exonic	Dnm2	nonsynonymous SNV	"Dnm2:NM_001039520:exon4:c.A511G:p.I171V,Dnm2:NM_001253893:exon4:c.A511G:p.I171V,Dnm2:NM_001253894:exon4:c.A511G:p.I171V,Dnm2:NM_001357718:exon4:c.A511G:p.I171V,Dnm2:NM_001357719:exon4:c.A511G:p.I171V,Dnm2:NM_001357721:exon4:c.A511G:p.I171V,Dnm2:NM_007871:exon4:c.A511G:p.I171V"	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.863337596	1	0.8740655	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	21835525	12A2p6	cell line	sgMsh2	21835525	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	38	0	0	NA	exonic	Angptl8	nonsynonymous SNV	Angptl8:NM_001080940:exon1:c.T8C:p.V3A	9qA3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.940179162	1	0.9250121	GTG	nonsynonymous	TGCT	8	TGCTTGCT	NA
M8_p20	chr9	26920584	12A2p6	cell line	sgMsh2	26920584	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	56	0	0	NA	exonic	Gm1110	synonymous SNV	Gm1110:NM_001281475:exon3:c.T270A:p.G90G	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9210301	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	27050348	12A2p6	cell line	sgMsh2	27050348	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	172	0	0	NA	exonic	Ncapd3	synonymous SNV	Ncapd3:NM_178113:exon10:c.A1071G:p.L357L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.999844	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	27094738	12A2p6	cell line	sgMsh2	27094738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	128	0	0	NA	exonic	Ncapd3	nonsynonymous SNV	"Ncapd3:NM_001382847:exon20:c.G1928T:p.R643M,Ncapd3:NM_178113:exon36:c.G4454T:p.R1485M"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9990024	AGG	nonsynonymous	CCAG	8	CCAGCCAG	NA
M8_p20	chr9	27333633	12A2p6	cell line	sgMsh2	27333633	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	30	0	0	NA	exonic	Igsf9b	nonsynonymous SNV	Igsf9b:NM_001326702:exon18:c.C2895A:p.F965L	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9411846	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	30432347	12A2p6	cell line	sgMsh2	30432347	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	92	0	0	NA	exonic	Snx19	nonsynonymous SNV	Snx19:NM_028874:exon2:c.A1802G:p.K601R	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9954612	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	31157844	12A2p6	cell line	sgMsh2	31157844	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	57	0	0	NA	exonic	Aplp2	nonsynonymous SNV	"Aplp2:NM_001102456:exon12:c.A1520C:p.E507A,Aplp2:NM_009691:exon12:c.A1520C:p.E507A,Aplp2:NM_001102455:exon13:c.A1688C:p.E563A,Aplp2:NM_001357698:exon13:c.A1688C:p.E563A"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.691574095	2	0.6632687	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	31357207	12A2p6	cell line	sgMsh2	31357207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	94	0	0	NA	exonic	Prdm10	synonymous SNV	"Prdm10:NM_001368846:exon15:c.G2373A:p.P791P,Prdm10:NM_001368845:exon16:c.G2385A:p.P795P"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9958269	CGC	synonymous	NA	NA	NA	NA
M8_p20	chr9	32260065	12A2p6	cell line	sgMsh2	32260065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	316	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon13:c.A4140G:p.V1380V,Arhgap32:NM_001195632:exon22:c.A5187G:p.V1729V,Arhgap32:NM_001370957:exon22:c.A5067G:p.V1689V,Arhgap32:NM_001370958:exon23:c.A5109G:p.V1703V"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999996	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr9	32397430	12A2p6	cell line	sgMsh2	32397430	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	175	0	0	NA	exonic	Kcnj1	nonsynonymous SNV	"Kcnj1:NM_001168354:exon2:c.A1149C:p.E383D,Kcnj1:NM_019659:exon2:c.A1089C:p.E363D"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998625	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	35124747	12A2p6	cell line	sgMsh2	35124747	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	92	0	0	NA	exonic	Dcps	nonsynonymous SNV	Dcps:NM_027030:exon6:c.C842A:p.A281D	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.949219347	1	0.9846402	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	35212743	12A2p6	cell line	sgMsh2	35212743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	46	0	0	NA	exonic	Srpr	nonsynonymous SNV	Srpr:NM_026130:exon4:c.T389C:p.I130T	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.791016122	1	0.7136005	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	35776754	12A2p6	cell line	sgMsh2	35776754	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	157	0	0	NA	exonic	Pate7	synonymous SNV	Pate7:NM_001167673:exon3:c.A189G:p.T63T	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997063	GTG	synonymous	TGTA	8	TGTATGTA	NA
M8_p20	chr9	36541825	12A2p6	cell line	sgMsh2	36541825	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	269	0	0	NA	exonic	Pate9	synonymous SNV	Pate9:NM_001033783:exon1:c.C48G:p.P16P	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999974	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr9	37347863	12A2p6	cell line	sgMsh2	37347863	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	73	0	0	NA	exonic	Ccdc15	nonsynonymous SNV	Ccdc15:NM_001081429:exon2:c.C55A:p.L19M	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9899398	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	37424838	12A2p6	cell line	sgMsh2	37424838	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	38	0	0	NA	exonic	Robo3	nonsynonymous SNV	Robo3:NM_001164767:exon9:c.C1331A:p.A444D	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9573794	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	37603376	12A2p6	cell line	sgMsh2	37603376	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	159	0	0	NA	exonic	Spa17	synonymous SNV	"Spa17:NM_001324545:exon5:c.T414C:p.D138D,Spa17:NM_011449:exon5:c.T414C:p.D138D"	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.99973	TAT	synonymous	NA	NA	NA	NA
M8_p20	chr9	37919228	12A2p6	cell line	sgMsh2	37919228	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	364	0	0	NA	exonic	Olfr878	synonymous SNV	Olfr878:NM_146798:exon1:c.T585C:p.S195S	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.881417965	1	0.9959299	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr9	37993406	12A2p6	cell line	sgMsh2	37993406	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.226	118	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
M8_p20	chr9	38085528	12A2p6	cell line	sgMsh2	38085528	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.267	214	0	0	NA	exonic	Olfr887	nonsynonymous SNV	Olfr887:NM_146423:exon1:c.G691A:p.E231K	9qA4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999735	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	38349354	12A2p6	cell line	sgMsh2	38349354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	550	0	0	NA	exonic	Olfr898	synonymous SNV	Olfr898:NM_146871:exon1:c.T270C:p.S90S	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	1.02E-09	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr9	38499220	12A2p6	cell line	sgMsh2	38499220	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	340	0	0	NA	exonic	Olfr907	synonymous SNV	Olfr907:NM_146805:exon1:c.T550C:p.L184L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	TTT	synonymous	NA	NA	NA	NA
M8_p20	chr9	38594513	12A2p6	cell line	sgMsh2	38594513	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	184	0	0	NA	exonic	Olfr913	synonymous SNV	Olfr913:NM_001011523:exon2:c.T291C:p.C97C	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999059	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr9	38606767	12A2p6	cell line	sgMsh2	38606767	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	271	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.T301C:p.F101L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999976	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	38665292	12A2p6	cell line	sgMsh2	38665292	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	281	0	0	NA	exonic	Olfr917	nonsynonymous SNV	Olfr917:NM_001011864:exon1:c.T551C:p.L184P	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999984	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	38848204	12A2p6	cell line	sgMsh2	38848204	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	346	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.C89T:p.A30V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	38848393	12A2p6	cell line	sgMsh2	38848393	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	306	0	0	NA	exonic	Olfr924	nonsynonymous SNV	Olfr924:NM_207560:exon1:c.A278T:p.E93V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	38976397	12A2p6	cell line	sgMsh2	38976397	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	271	0	0	NA	exonic	Olfr933	synonymous SNV	Olfr933:NM_146441:exon1:c.C720T:p.T240T	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999976	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	39018999	12A2p6	cell line	sgMsh2	39018999	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	246	0	0	NA	exonic	Olfr146	nonsynonymous SNV	Olfr146:NM_146747:exon1:c.C541A:p.L181I	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9965648	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	39078200	12A2p6	cell line	sgMsh2	39078200	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	199	0	0	NA	exonic	Olfr938	nonsynonymous SNV	Olfr938:NM_146438:exon1:c.T544C:p.F182L	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.747647	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	39258136	12A2p6	cell line	sgMsh2	39258136	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.522	368	0	0	NA	exonic	Olfr945	nonsynonymous SNV	Olfr945:NM_146506:exon1:c.T544G:p.C182G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	4.10E-08	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	39591437	12A2p6	cell line	sgMsh2	39591437	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	276	0	0	NA	exonic	AW551984	synonymous SNV	"AW551984:NM_001199556:exon16:c.A1938G:p.S646S,AW551984:NM_001359951:exon16:c.A1938G:p.S646S,AW551984:NM_178737:exon16:c.A1938G:p.S646S"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999981	CTG	synonymous	NA	NA	NA	NA
M8_p20	chr9	39751102	12A2p6	cell line	sgMsh2	39751102	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	348	0	0	NA	exonic	Olfr967	nonsynonymous SNV	Olfr967:NM_001011826:exon1:c.A715G:p.S239G	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.967299715	1	0.9999981	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	40782486	12A2p6	cell line	sgMsh2	40782486	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	59	0	0	NA	exonic	Clmp	nonsynonymous SNV	Clmp:NM_133733:exon7:c.A998G:p.Y333C	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.804576399	1	0.7233186	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	40944514	12A2p6	cell line	sgMsh2	40944514	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	159	0	0	NA	exonic	Jhy	nonsynonymous SNV	"Jhy:NM_001081121:exon3:c.A676C:p.S226R,Jhy:NM_001357359:exon3:c.A688C:p.S230R,Jhy:NM_001357360:exon3:c.A676C:p.S226R"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.99973	CTC	nonsynonymous	TGAGCT	12	TGAGCTTGAGCT	NA
M8_p20	chr9	41969739	12A2p6	cell line	sgMsh2	41969739	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.363	44	0	0	NA	exonic	Sorl1	nonsynonymous SNV	"Sorl1:NM_001357261:exon42:c.A5483C:p.K1828T,Sorl1:NM_011436:exon47:c.A6485C:p.K2162T"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9666059	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	42377588	12A2p6	cell line	sgMsh2	42377588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	54	0	0	NA	exonic	Tecta	synonymous SNV	"Tecta:NM_001324548:exon8:c.C1680T:p.N560N,Tecta:NM_009347:exon8:c.C1680T:p.N560N,Tecta:NM_001378602:exon9:c.C1680T:p.N560N"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.8845912	CGT	synonymous	NA	NA	NA	NA
M8_p20	chr9	43001538	12A2p6	cell line	sgMsh2	43001538	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	137	0	0	NA	exonic	Arhgef12	synonymous SNV	"Arhgef12:NM_001359232:exon17:c.T1359G:p.P453P,Arhgef12:NM_027144:exon17:c.T1362G:p.P454P"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.917578702	1	0.9868208	CAG	synonymous	NA	NA	NA	NA
M8_p20	chr9	43791318	12A2p6	cell line	sgMsh2	43791318	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	67	0	0	NA	exonic	Nectin1	nonsynonymous SNV	Nectin1:NM_021424:exon2:c.A361G:p.M121V	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9870797	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	44107907	12A2p6	cell line	sgMsh2	44107907	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.445	10	0	0	NA	exonic	C1qtnf5	synonymous SNV	"C1qtnf5:NM_001040631:exon2:c.C150T:p.D50D,C1qtnf5:NM_001040632:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190319:exon2:c.C150T:p.D50D,C1qtnf5:NM_001190313:exon13:c.C150T:p.D50D,C1qtnf5:NM_145613:exon13:c.C150T:p.D50D"	9qA5.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.8687136	ACG	synonymous	NA	NA	NA	NA
M8_p20	chr9	44436222	12A2p6	cell line	sgMsh2	44436222	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.287	181	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
M8_p20	chr9	44509128	12A2p6	cell line	sgMsh2	44509128	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	32	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G3719C:p.G1240A,Bcl9l:NM_030256:exon9:c.G3830C:p.G1277A"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.894978241	1	0.8775136	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	45256315	12A2p6	cell line	sgMsh2	45256315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	88	0	0	NA	exonic	Il10ra	nonsynonymous SNV	"Il10ra:NM_001324486:exon7:c.C937T:p.H313Y,Il10ra:NM_008348:exon7:c.C943T:p.H315Y"	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9946315	TGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	46211817	12A2p6	cell line	sgMsh2	46211817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.084	88	0	0	NA	exonic	Sik3	synonymous SNV	Sik3:NM_027498:exon21:c.T2913C:p.P971P	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.379687739	3	0.9809504	CTC	synonymous	NA	NA	NA	NA
M8_p20	chr9	46230340	12A2p6	cell line	sgMsh2	46230340	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	41	0	0	NA	exonic	Apoa1	nonsynonymous SNV	Apoa1:NM_009692:exon4:c.A733G:p.T245A	9qA5.2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.664453543	2	0.5773192	GAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	51119248	12A2p6	cell line	sgMsh2	51119248	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	44	0	0	NA	exonic	Btg4	nonsynonymous SNV	Btg4:NM_019493:exon5:c.C647T:p.S216L	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9666059	TCG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	52117580	12A2p6	cell line	sgMsh2	52117580	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	250	0	0	NA	exonic	Zc3h12c	nonsynonymous SNV	"Zc3h12c:NM_001162921:exon5:c.A1274G:p.K425R,Zc3h12c:NM_001368810:exon5:c.A1217G:p.K406R"	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999942	TTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	53375752	12A2p6	cell line	sgMsh2	53375752	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	83	0	0	NA	exonic	Exph5	nonsynonymous SNV	Exph5:NM_176846:exon6:c.G4132A:p.E1378K	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.687054003	2	0.8561154	AGA	nonsynonymous	AG	9	AGAGAGAGA	NA
M8_p20	chr9	53442446	12A2p6	cell line	sgMsh2	53442446	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	298	0	0	NA	exonic	Atm	nonsynonymous SNV	Atm:NM_007499:exon60:c.A8768G:p.D2923G	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999992	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	54477508	12A2p6	cell line	sgMsh2	54477508	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	169	0	0	NA	exonic	Dmxl2	synonymous SNV	Dmxl2:NM_172771:exon3:c.T234C:p.N78N	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998229	CAT	synonymous	NA	NA	NA	NA
M8_p20	chr9	54541132	12A2p6	cell line	sgMsh2	54541132	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	49	0	0	NA	exonic	Sh2d7	nonsynonymous SNV	Sh2d7:NM_173778:exon5:c.A958C:p.S320R	9qA5.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9727877	CAG	nonsynonymous	C	6	CCCCCC	NA
M8_p20	chr9	54954911	12A2p6	cell line	sgMsh2	54954911	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	168	0	0	NA	exonic	Psma4	synonymous SNV	Psma4:NM_011966:exon6:c.C318A:p.P106P	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9997113	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	56207126	12A2p6	cell line	sgMsh2	56207126	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	91	0	0	NA	exonic	Peak1	synonymous SNV	Peak1:NM_172924:exon7:c.C4530T:p.N1510N	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9952666	AGT	synonymous	NA	NA	NA	NA
M8_p20	chr9	56260602	12A2p6	cell line	sgMsh2	56260602	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.048	701	0	0	NA	exonic	Peak1	nonsynonymous SNV	Peak1:NM_172924:exon4:c.C41A:p.P14H	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.216964422	3	1	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	56474581	12A2p6	cell line	sgMsh2	56474581	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	263	0	0	NA	exonic	Hmg20a	nonsynonymous SNV	Hmg20a:NM_025812:exon3:c.A140G:p.N47S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9999932	AAC	nonsynonymous	CAAC	9	CAACCAACC	NA
M8_p20	chr9	57131247	12A2p6	cell line	sgMsh2	57131247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	45	0	0	NA	exonic	Man2c1	nonsynonymous SNV	Man2c1:NM_028636:exon2:c.A190G:p.S64G	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9679424	CAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	57682398	12A2p6	cell line	sgMsh2	57682398	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	87	0	0	NA	exonic	Cyp1a2	synonymous SNV	Cyp1a2:NM_009993:exon2:c.C132A:p.P44P	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9944015	AGG	synonymous	NA	NA	NA	NA
M8_p20	chr9	57760891	12A2p6	cell line	sgMsh2	57760891	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	123	0	0	NA	exonic	Clk3	nonsynonymous SNV	Clk3:NM_007713:exon3:c.A302G:p.Y101C	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9987684	GTA	nonsynonymous	GGTAC	12	GGTACGGTACGG	NA
M8_p20	chr9	58290762	12A2p6	cell line	sgMsh2	58290762	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	148	0	0	NA	exonic	Loxl1	nonsynonymous SNV	Loxl1:NM_010729:exon6:c.A1810C:p.I604L	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995707	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	58366943	12A2p6	cell line	sgMsh2	58366943	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.274	135	0	0	NA	exonic	Tbc1d21	frameshift deletion	"Tbc1d21:NM_001357455:exon2:c.78delC:p.I27Lfs*35,Tbc1d21:NM_028854:exon2:c.78delC:p.I27Lfs*35"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8_p20	chr9	59324811	12A2p6	cell line	sgMsh2	59324811	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	149	0	0	NA	exonic	Bbs4	nonsynonymous SNV	"Bbs4:NM_001359558:exon11:c.T902C:p.V301A,Bbs4:NM_175325:exon13:c.T1085C:p.V362A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995884	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	59675665	12A2p6	cell line	sgMsh2	59675665	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.221	29	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001378869:exon9:c.C1238G:p.A413G,Pkm:NM_001378870:exon9:c.C1238G:p.A413G,Pkm:NM_011099:exon9:c.C1238G:p.A413G,Pkm:NM_001378868:exon10:c.C1238G:p.A413G"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.99894036	1	0.9383158	GCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	59678755	12A2p6	cell line	sgMsh2	59678755	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	158	0	0	NA	exonic	Pkm	nonsynonymous SNV	"Pkm:NM_001253883:exon11:c.G1517T:p.G506V,Pkm:NM_001378867:exon11:c.G1517T:p.G506V,Pkm:NM_001378869:exon11:c.G1517T:p.G506V,Pkm:NM_001378870:exon11:c.G1517T:p.G506V,Pkm:NM_001378872:exon11:c.G1580T:p.G527V,Pkm:NM_011099:exon11:c.G1517T:p.G506V,Pkm:NM_001378866:exon12:c.G1517T:p.G506V,Pkm:NM_001378868:exon12:c.G1517T:p.G506V,Pkm:NM_001378871:exon12:c.G1697T:p.G566V"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997184	GGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	60737827	12A2p6	cell line	sgMsh2	60737827	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	54	0	0	NA	exonic	Larp6	nonsynonymous SNV	Larp6:NM_026235:exon3:c.A1249G:p.M417V	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	60854360	12A2p6	cell line	sgMsh2	60854360	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	192	0	0	NA	exonic	Uaca	nonsynonymous SNV	"Uaca:NM_001357407:exon8:c.T653C:p.V218A,Uaca:NM_001357408:exon8:c.T653C:p.V218A,Uaca:NM_028283:exon8:c.T653C:p.V218A"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9914813	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	62881996	12A2p6	cell line	sgMsh2	62881996	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	95	0	0	NA	exonic	Pias1	nonsynonymous SNV	Pias1:NM_019663:exon14:c.T1928G:p.I643S	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9959986	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	63145814	12A2p6	cell line	sgMsh2	63145814	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	19	0	0	NA	exonic	Skor1	nonsynonymous SNV	"Skor1:NM_001163755:exon2:c.A788G:p.N263S,Skor1:NM_001163757:exon2:c.A788G:p.N263S,Skor1:NM_001163758:exon2:c.A755G:p.N252S,Skor1:NM_172446:exon2:c.A872G:p.N291S"	9qB	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9088309	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	65594470	12A2p6	cell line	sgMsh2	65594470	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	58	0	0	NA	exonic	Pif1	synonymous SNV	"Pif1:NM_172453:exon11:c.T1746C:p.R582R,Pif1:NM_001357526:exon12:c.T1746C:p.R582R,Pif1:NM_001357527:exon12:c.T1746C:p.R582R"	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9714159	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr9	65958607	12A2p6	cell line	sgMsh2	65958607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	290	0	0	NA	exonic	Csnk1g1	nonsynonymous SNV	Csnk1g1:NM_173185:exon3:c.A67G:p.T23A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999989	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	66396684	12A2p6	cell line	sgMsh2	66396684	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	221	0	0	NA	exonic	Herc1	synonymous SNV	Herc1:NM_145617:exon11:c.T2268C:p.S756S	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999802	GTA	synonymous	NA	NA	NA	NA
M8_p20	chr9	66451385	12A2p6	cell line	sgMsh2	66451385	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	220	0	0	NA	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon38:c.G7747T:p.G2583W	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999794	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	66970647	12A2p6	cell line	sgMsh2	66970647	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	170	0	0	NA	exonic	Lactb	nonsynonymous SNV	Lactb:NM_030717:exon4:c.A899C:p.E300A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9998302	TTC	nonsynonymous	TTTC	8	TTTCTTTC	NA
M8_p20	chr9	67894014	12A2p6	cell line	sgMsh2	67894014	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	306	0	0	NA	exonic	Vps13c	nonsynonymous SNV	Vps13c:NM_177184:exon20:c.T1775C:p.V592A	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.908538517	1	0.9991326	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	67963183	12A2p6	cell line	sgMsh2	67963183	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.121	49	0	0	NA	exonic	Vps13c	stopgain	Vps13c:NM_177184:exon69:c.G9603A:p.W3201X	9qC	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.546931147	2	0.07534967	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	70338725	12A2p6	cell line	sgMsh2	70338725	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.395	118	0	0	NA	exonic	Myo1e	synonymous SNV	Myo1e:NM_181072:exon12:c.C1197A:p.G399G	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9984797	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	71725634	12A2p6	cell line	sgMsh2	71725634	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	69	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.A434C:p.N145T,Cgnl1:NM_026599:exon2:c.A434C:p.N145T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9881126	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	72694551	12A2p6	cell line	sgMsh2	72694551	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	165	0	0	NA	exonic	Nedd4	nonsynonymous SNV	Nedd4:NM_001357998:exon1:c.T1113A:p.D371E	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9997904	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	73012578	12A2p6	cell line	sgMsh2	73012578	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	151	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286544:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286545:exon8:c.T1474C:p.F492L,Ccpg1:NM_001286546:exon8:c.T1174C:p.F392L,Ccpg1:NM_028181:exon8:c.T1474C:p.F492L,Ccpg1:NM_001359295:exon9:c.T1570C:p.F524L,Ccpg1:NM_001359296:exon9:c.T1570C:p.F524L"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9996217	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	73680356	12A2p6	cell line	sgMsh2	73680356	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	129	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon13:c.T4394G:p.F1465C	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.91305861	1	0.9819866	AAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	75056666	12A2p6	cell line	sgMsh2	75056666	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.151	142	0	0	NA	exonic	Arpp19	nonsynonymous SNV	"Arpp19:NM_001357881:exon3:c.T152C:p.M51T,Arpp19:NM_021548:exon3:c.T200C:p.M67T,Arpp19:NM_001142655:exon4:c.T299C:p.M100T,Arpp19:NM_001357878:exon4:c.T200C:p.M67T,Arpp19:NM_001357879:exon4:c.T200C:p.M67T,Arpp19:NM_001357880:exon4:c.T152C:p.M51T"	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.682533911	2	0.9865898	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	75181921	12A2p6	cell line	sgMsh2	75181921	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	241	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon25:c.A3332G:p.K1111R	9qD	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.854297412	1	0.9191429	AAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	78419261	12A2p6	cell line	sgMsh2	78419261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	313	0	0	NA	exonic	Ddx43	nonsynonymous SNV	Ddx43:NM_001191044:exon14:c.T1650A:p.D550E	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999996	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	78479092	12A2p6	cell line	sgMsh2	78479092	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	174	0	0	NA	exonic	Eef1a1	nonsynonymous SNV	Eef1a1:NM_010106:exon7:c.A1130C:p.E377A	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998566	TTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	78660981	12A2p6	cell line	sgMsh2	78660981	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	201	0	0	NA	exonic	Cd109	synonymous SNV	Cd109:NM_153098:exon9:c.T942C:p.S314S	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.858817504	1	0.9253309	GTT	synonymous	NA	NA	NA	NA
M8_p20	chr9	79684448	12A2p6	cell line	sgMsh2	79684448	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	226	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon14:c.A2729G:p.N910S	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.904018425	1	0.9951887	GTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	79700544	12A2p6	cell line	sgMsh2	79700544	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	28	0	0	NA	exonic	Col12a1	nonsynonymous SNV	Col12a1:NM_001290308:exon9:c.T1001C:p.I334T	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9272927	GAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	80136750	12A2p6	cell line	sgMsh2	80136750	A	-	Deletion	Mutect2;Vardict	2	0.279	122	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
M8_p20	chr9	82887617	12A2p6	cell line	sgMsh2	82887617	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	224	0	0	NA	exonic	Phip	synonymous SNV	Phip:NM_001081216:exon30:c.T3432C:p.C1144C	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.809096491	2	0.574443	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	83790042	12A2p6	cell line	sgMsh2	83790042	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	192	0	0	NA	exonic	Elovl4	nonsynonymous SNV	Elovl4:NM_148941:exon2:c.A223C:p.M75L	9qE2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999329	ATT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	85697205	12A2p6	cell line	sgMsh2	85697205	T	-	Deletion	Strelka2;Vardict	2	0.2222	27	0	0	NA	exonic	Ibtk	frameshift deletion	"Ibtk:NM_175371:exon25:c.1956delA:p.K652Nfs*25,Ibtk:NM_001081282:exon26:c.3636delA:p.K1212Nfs*25"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
M8_p20	chr9	86557584	12A2p6	cell line	sgMsh2	86557584	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	123	0	0	NA	exonic	Pgm3	synonymous SNV	Pgm3:NM_028352:exon11:c.T1284C:p.A428A	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9987684	TAG	synonymous	NA	NA	NA	NA
M8_p20	chr9	87210894	12A2p6	cell line	sgMsh2	87210894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	73	0	0	NA	exonic	Cep162	nonsynonymous SNV	Cep162:NM_199316:exon21:c.A2675G:p.K892R	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9842387	TTT	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr9	88476836	12A2p6	cell line	sgMsh2	88476836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	65	0	0	NA	exonic	Syncrip	nonsynonymous SNV	"Syncrip:NM_001311113:exon5:c.T325C:p.F109L,Syncrip:NM_001284328:exon6:c.T619C:p.F207L,Syncrip:NM_019666:exon6:c.T619C:p.F207L,Syncrip:NM_019796:exon6:c.T619C:p.F207L"	9qE3.1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9859582	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	96038897	12A2p6	cell line	sgMsh2	96038897	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	143	0	0	NA	exonic	Xrn1	nonsynonymous SNV	"Xrn1:NM_001311130:exon36:c.A4060G:p.N1354D,Xrn1:NM_011916:exon36:c.A4060G:p.N1354D"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.994420268	1	0.9993461	GAA	nonsynonymous	T	5	TTTTT	NA
M8_p20	chr9	96297705	12A2p6	cell line	sgMsh2	96297705	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.328	102	0	0	NA	exonic	Tfdp2	frameshift insertion	"Tfdp2:NM_001184708:exon5:c.191dupA:p.E67Rfs*46,Tfdp2:NM_001184710:exon5:c.338dupA:p.E116Rfs*46,Tfdp2:NM_001184709:exon6:c.416dupA:p.E142Rfs*46,Tfdp2:NM_001184711:exon6:c.419dupA:p.E143Rfs*46,Tfdp2:NM_001184706:exon8:c.416dupA:p.E142Rfs*46,Tfdp2:NM_178667:exon9:c.416dupA:p.E142Rfs*46"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	GGA	frameshift	A	8	AAAAAAAA	1
M8_p20	chr9	99009261	12A2p6	cell line	sgMsh2	99009261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	174	0	0	NA	exonic	Gm1123	synonymous SNV	Gm1123:NM_001080776:exon7:c.T1134C:p.G378G	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998566	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	99009322	12A2p6	cell line	sgMsh2	99009322	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	171	0	0	NA	exonic	Gm1123	nonsynonymous SNV	Gm1123:NM_001080776:exon7:c.T1073A:p.I358K	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998372	TAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	99289216	12A2p6	cell line	sgMsh2	99289216	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.301	86	0	0	NA	exonic	Cep70	frameshift deletion	Cep70:NM_023873:exon12:c.1022delA:p.K343Sfs*42	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
M8_p20	chr9	100497512	12A2p6	cell line	sgMsh2	100497512	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	309	0	0	NA	exonic	Nck1	nonsynonymous SNV	"Nck1:NM_001324530:exon2:c.T493C:p.W165R,Nck1:NM_010878:exon3:c.T685C:p.W229R"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	100855832	12A2p6	cell line	sgMsh2	100855832	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	392	0	0	NA	exonic	Stag1	nonsynonymous SNV	"Stag1:NM_001357264:exon12:c.A830T:p.E277V,Stag1:NM_009282:exon13:c.A1241T:p.E414V"	9qE3.3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	1.56E-08	GAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	101075403	12A2p6	cell line	sgMsh2	101075403	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	54	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T125G:p.L42R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	101075408	12A2p6	cell line	sgMsh2	101075408	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	52	0	0	NA	exonic	Msl2	nonsynonymous SNV	Msl2:NM_001100451:exon1:c.T130C:p.C44R	9qE4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9759459	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	103067843	12A2p6	cell line	sgMsh2	103067843	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	84	0	0	NA	exonic	Slco2a1	nonsynonymous SNV	Slco2a1:NM_033314:exon4:c.A416G:p.Q139R	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.993651	CAG	nonsynonymous	GACC	8	GACCGACC	NA
M8_p20	chr9	103306170	12A2p6	cell line	sgMsh2	103306170	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	112	0	0	NA	exonic	Topbp1	frameshift deletion	Topbp1:NM_176979:exon2:c.67delT:p.F24Lfs*6	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
M8_p20	chr9	104192768	12A2p6	cell line	sgMsh2	104192768	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	359	0	0	NA	exonic	Dnajc13	synonymous SNV	"Dnajc13:NM_001163026:exon30:c.T3268C:p.L1090L,Dnajc13:NM_001359740:exon31:c.T3283C:p.L1095L"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.989900176	1	0.9999998	AAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	105915149	12A2p6	cell line	sgMsh2	105915149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	151	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon16:c.A4511G:p.D1504G	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.87237778	1	0.9429771	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	106077431	12A2p6	cell line	sgMsh2	106077431	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	145	0	0	NA	exonic	Col6a4	nonsynonymous SNV	Col6a4:NM_026763:exon4:c.T708G:p.I236M	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9995128	CAA	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	106155782	12A2p6	cell line	sgMsh2	106155782	A	G	SNV	Mutect2;Strelka2	2	0.165	44	0	0	NA	exonic	Glyctk	nonsynonymous SNV	"Glyctk:NM_174846:exon4:c.T1031C:p.V344A,Glyctk:NM_001039586:exon5:c.T1031C:p.V344A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.745815201	1	0.6004547	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	106243319	12A2p6	cell line	sgMsh2	106243319	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	37	0	0	NA	exonic	Alas1	synonymous SNV	"Alas1:NM_001291835:exon3:c.G276A:p.Q92Q,Alas1:NM_020559:exon3:c.G276A:p.Q92Q"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.976339899	1	0.9447352	GCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	106847823	12A2p6	cell line	sgMsh2	106847823	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	99	0	0	NA	exonic	Dcaf1	nonsynonymous SNV	"Dcaf1:NM_001373931:exon10:c.C1348G:p.L450V,Dcaf1:NM_001015507:exon11:c.C1507G:p.L503V,Dcaf1:NM_001373930:exon11:c.C1507G:p.L503V"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9966178	ACT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	106896764	12A2p6	cell line	sgMsh2	106896764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.447	44	0	0	NA	exonic	Dock3	frameshift deletion	Dock3:NM_153413:exon52:c.5555delC:p.P1852Rfs*44	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
M8_p20	chr9	107755858	12A2p6	cell line	sgMsh2	107755858	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	134	0	0	NA	exonic	Rbm5	nonsynonymous SNV	"Rbm5:NM_001359524:exon8:c.A623C:p.K208T,Rbm5:NM_001359525:exon8:c.A623C:p.K208T,Rbm5:NM_001359526:exon8:c.A623C:p.K208T,Rbm5:NM_148930:exon8:c.A623C:p.K208T"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.705134372	2	0.9619178	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	107977904	12A2p6	cell line	sgMsh2	107977904	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	63	0	0	NA	exonic	Uba7	nonsynonymous SNV	Uba7:NM_023738:exon9:c.G965A:p.G322E	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.971819807	1	0.9758673	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	108052065	12A2p6	cell line	sgMsh2	108052065	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	173	0	0	NA	exonic	Rnf123	nonsynonymous SNV	"Rnf123:NM_001311152:exon38:c.T3812C:p.V1271A,Rnf123:NM_032543:exon38:c.T3794C:p.V1265A"	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.795536214	2	0.6237823	CAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	108106697	12A2p6	cell line	sgMsh2	108106697	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	141	0	0	NA	exonic	Bsn	nonsynonymous SNV	Bsn:NM_007567:exon6:c.A10157C:p.E3386A	9qF1	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.831696951	1	0.7702192	CTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	108500201	12A2p6	cell line	sgMsh2	108500201	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.293	107	0	0	NA	exonic	Usp19	frameshift deletion	"Usp19:NM_145407:exon25:c.3715delC:p.R1241Gfs*10,Usp19:NM_001168371:exon26:c.3790delC:p.R1266Gfs*10,Usp19:NM_001168372:exon26:c.3787delC:p.R1265Gfs*10,Usp19:NM_001168373:exon26:c.3784delC:p.R1264Gfs*10,Usp19:NM_027804:exon26:c.3787delC:p.R1265Gfs*10"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
M8_p20	chr9	108560563	12A2p6	cell line	sgMsh2	108560563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	54	0	0	NA	exonic	Impdh2	synonymous SNV	"Impdh2:NM_001378921:exon1:c.C30T:p.T10T,Impdh2:NM_011830:exon1:c.C30T:p.T10T"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9778495	CCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	108574805	12A2p6	cell line	sgMsh2	108574805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	75	0	0	NA	exonic	Wdr6	synonymous SNV	Wdr6:NM_031392:exon2:c.T1878C:p.S626S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9907462	TAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	109025148	12A2p6	cell line	sgMsh2	109025148	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	109	0	0	NA	exonic	Pfkfb4	synonymous SNV	Pfkfb4:NM_173019:exon10:c.T1089C:p.G363G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.980859991	1	0.9961598	GTG	synonymous	NA	NA	NA	NA
M8_p20	chr9	109061570	12A2p6	cell line	sgMsh2	109061570	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	85	0	0	NA	exonic	Atrip	nonsynonymous SNV	Atrip:NM_172774:exon9:c.A1829G:p.D610G	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9939116	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	110109082	12A2p6	cell line	sgMsh2	110109082	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.302	134	0	0	NA	exonic	Dhx30	frameshift deletion	"Dhx30:NM_133347:exon4:c.137delC:p.P46Hfs*24,Dhx30:NM_001252682:exon5:c.68delC:p.P23Hfs*24"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
M8_p20	chr9	110164837	12A2p6	cell line	sgMsh2	110164837	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	217	0	0	NA	exonic	Smarcc1	nonsynonymous SNV	Smarcc1:NM_009211:exon8:c.C749T:p.A250V	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999766	GCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	110455415	12A2p6	cell line	sgMsh2	110455415	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	176	0	0	NA	exonic	Klhl18	nonsynonymous SNV	"Klhl18:NM_001360306:exon2:c.A202G:p.T68A,Klhl18:NM_177771:exon2:c.A202G:p.T68A"	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.876897873	1	0.9619332	GTA	nonsynonymous	TCGT	8	TCGTTCGT	NA
M8_p20	chr9	110622176	12A2p6	cell line	sgMsh2	110622176	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	97	0	0	NA	exonic	Nradd	synonymous SNV	Nradd:NM_026012:exon3:c.A123T:p.L41L	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.890458149	1	0.9428857	ATA	synonymous	NA	NA	NA	NA
M8_p20	chr9	110632845	12A2p6	cell line	sgMsh2	110632845	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	59	0	0	NA	exonic	Nbeal2	nonsynonymous SNV	Nbeal2:NM_183276:exon29:c.C4543T:p.P1515S	9qF2	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9819865	GGA	nonsynonymous	G	5	GGGGG	NA
M8_p20	chr9	111390241	12A2p6	cell line	sgMsh2	111390241	T	-	Deletion	Mutect2;Vardict	2	0.126	93	0	0	NA	exonic	Trank1	frameshift deletion	Trank1:NM_001164659:exon20:c.6045delT:p.Q2017Rfs*18	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.569531608	NA	NA	ATT	frameshift	NA	NA	NA	-1
M8_p20	chr9	114381671	12A2p6	cell line	sgMsh2	114381671	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	168	0	0	NA	exonic	Crtap	synonymous SNV	Crtap:NM_019922:exon4:c.G834A:p.E278E	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9998153	TCT	synonymous	NA	NA	NA	NA
M8_p20	chr9	114405059	12A2p6	cell line	sgMsh2	114405059	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.357	21	0	0	NA	exonic	Tmppe	nonsynonymous SNV	Tmppe:NM_001200002:exon2:c.A425G:p.Y142C	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9158085	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	114720642	12A2p6	cell line	sgMsh2	114720642	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	74	0	0	NA	exonic	Dync1li1	nonsynonymous SNV	Dync1li1:NM_146229:exon11:c.T1279C:p.S427P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.668973635	2	0.8485396	ATC	nonsynonymous	A	5	AAAAA	NA
M8_p20	chr9	119112123	12A2p6	cell line	sgMsh2	119112123	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	237	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon4:c.A740G:p.E247G,Dlec1:NM_001368821:exon4:c.A740G:p.E247G,Dlec1:NM_177117:exon4:c.A740G:p.E247G"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9999899	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	119138188	12A2p6	cell line	sgMsh2	119138188	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	72	0	0	NA	exonic	Dlec1	nonsynonymous SNV	"Dlec1:NM_001368820:exon25:c.T3638C:p.V1213A,Dlec1:NM_001368821:exon25:c.T3635C:p.V1212A,Dlec1:NM_177117:exon25:c.T3641C:p.V1214A"	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.791016122	1	0.6420622	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chr9	119769833	12A2p6	cell line	sgMsh2	119769833	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	115	0	0	NA	exonic	Scn11a	synonymous SNV	Scn11a:NM_011887:exon22:c.T3630C:p.S1210S	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.998275	TAC	synonymous	ACTA	9	ACTAACTAA	NA
M8_p20	chr9	119945533	12A2p6	cell line	sgMsh2	119945533	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	48	0	0	NA	exonic	Ttc21a	synonymous SNV	Ttc21a:NM_028735:exon8:c.C852A:p.P284P	9qF3	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9716478	CCC	synonymous	NA	NA	NA	NA
M8_p20	chr9	121915557	12A2p6	cell line	sgMsh2	121915557	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	138	0	0	NA	exonic	Cyp8b1	synonymous SNV	Cyp8b1:NM_010012:exon1:c.T708C:p.H236H	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	1	1	0.9993455	GAT	synonymous	NA	NA	NA	NA
M8_p20	chr9	123100428	12A2p6	cell line	sgMsh2	123100428	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	114	0	0	NA	exonic	Zdhhc3	synonymous SNV	"Zdhhc3:NM_001372538:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372540:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372541:exon2:c.T141C:p.C47C,Zdhhc3:NM_026917:exon2:c.T141C:p.C47C,Zdhhc3:NM_001372539:exon3:c.T141C:p.C47C"	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	2	1	1	0.9982008	CAC	synonymous	NA	NA	NA	NA
M8_p20	chr9	123189924	12A2p6	cell line	sgMsh2	123189924	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	178	0	0	NA	exonic	Cdcp1	nonsynonymous SNV	Cdcp1:NM_133974:exon2:c.A289T:p.I97F	9qF4	chr9-3190600-124127055	4	2	2	0.9	4.068082914	NA	1	0.727734832	2	0.9768129	ATA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	7573341	12A2p6	cell line	sgMsh2	7573341	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.571	21	0	0	NA	exonic	Ppp1r3f	nonsynonymous SNV	"Ppp1r3f:NM_001290574:exon1:c.A908T:p.Q303L,Ppp1r3f:NM_138605:exon1:c.A908T:p.Q303L"	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTG	nonsynonymous	GCT	22	GCTGCTGCAGCTGCTGCTGCTG	NA
M8_p20	chrX	7644115	12A2p6	cell line	sgMsh2	7644115	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.543	54	0	0	NA	exonic	Syp	nonsynonymous SNV	Syp:NM_009305:exon4:c.A242G:p.Y81C	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	7665330	12A2p6	cell line	sgMsh2	7665330	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	78	0	0	NA	exonic	Prickle3	nonsynonymous SNV	Prickle3:NM_001290624:exon7:c.T872C:p.V291A	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	8127924	12A2p6	cell line	sgMsh2	8127924	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	74	0	0	NA	exonic	Wdr13	synonymous SNV	"Wdr13:NM_001290783:exon7:c.A765G:p.V255V,Wdr13:NM_026137:exon7:c.A1041G:p.V347V,Wdr13:NM_028542:exon7:c.A765G:p.V255V"	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTA	synonymous	NA	NA	NA	NA
M8_p20	chrX	9849913	12A2p6	cell line	sgMsh2	9849913	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	173	0	0	NA	exonic	H2al3	nonsynonymous SNV	H2al3:NM_029229:exon1:c.T163C:p.S55P	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	13665387	12A2p6	cell line	sgMsh2	13665387	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	171	0	0	NA	exonic	Gpr82	nonsynonymous SNV	Gpr82:NM_175669:exon4:c.T173C:p.V58A	XqA1.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	37147845	12A2p6	cell line	sgMsh2	37147845	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.513	119	0	0	NA	exonic	Nkap	synonymous SNV	Nkap:NM_025937:exon9:c.T1128C:p.A376A	XqA3.3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTG	synonymous	NA	NA	NA	NA
M8_p20	chrX	37581356	12A2p6	cell line	sgMsh2	37581356	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.415	164	0	0	NA	exonic	Rhox3f	nonsynonymous SNV	Rhox3f:NM_001040089:exon1:c.G5A:p.S2N	XqA3.3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	44366612	12A2p6	cell line	sgMsh2	44366612	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	44	0	0	NA	exonic	Dcaf12l2	nonsynonymous SNV	Dcaf12l2:NM_175539:exon1:c.C1399T:p.L467F	XqA4	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	56348630	12A2p6	cell line	sgMsh2	56348630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.592	41	0	0	NA	exonic	Zfp449	nonsynonymous SNV	Zfp449:NM_030139:exon2:c.A256G:p.I86V	XqA6	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	56455218	12A2p6	cell line	sgMsh2	56455218	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	82	0	0	NA	exonic	Ints6l	synonymous SNV	Ints6l:NM_172779:exon1:c.C13T:p.L5L	XqA6	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
M8_p20	chrX	59250858	12A2p6	cell line	sgMsh2	59250858	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	60	0	0	NA	exonic	Fgf13	nonsynonymous SNV	Fgf13:NM_001290414:exon3:c.A158G:p.H53R	XqA6	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	60123245	12A2p6	cell line	sgMsh2	60123245	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	79	0	0	NA	exonic	Mcf2	synonymous SNV	"Mcf2:NM_001359001:exon7:c.G825A:p.Q275Q,Mcf2:NM_001358998:exon8:c.G945A:p.Q315Q,Mcf2:NM_001358999:exon8:c.G945A:p.Q315Q,Mcf2:NM_001359000:exon8:c.G942A:p.Q314Q,Mcf2:NM_001289730:exon9:c.G1062A:p.Q354Q,Mcf2:NM_133197:exon9:c.G1062A:p.Q354Q,Mcf2:NM_001289731:exon12:c.G1611A:p.Q537Q"	XqA6	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TCT	synonymous	NA	NA	NA	NA
M8_p20	chrX	61185085	12A2p6	cell line	sgMsh2	61185085	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.554	67	0	0	NA	exonic	Cdr1	nonsynonymous SNV	Cdr1:NM_001166658:exon1:c.T474G:p.D158E	XqA6	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	64151661	12A2p6	cell line	sgMsh2	64151661	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.64	32	0	0	NA	exonic	Gm6760	nonsynonymous SNV	Gm6760:NM_001177377:exon2:c.G179T:p.R60M	XqA7.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	66656280	12A2p6	cell line	sgMsh2	66656280	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	71	0	0	NA	exonic	Slitrk2	synonymous SNV	"Slitrk2:NM_198863:exon2:c.A2376G:p.R792R,Slitrk2:NM_001161431:exon3:c.A2376G:p.R792R"	XqA7.1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAC	synonymous	NA	NA	NA	NA
M8_p20	chrX	73759497	12A2p6	cell line	sgMsh2	73759497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	68	0	0	NA	exonic	Plxnb3	nonsynonymous SNV	Plxnb3:NM_019587:exon2:c.T970C:p.Y324H	XqA7.3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	73774937	12A2p6	cell line	sgMsh2	73774937	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.553	129	0	0	NA	exonic	Srpk3	nonsynonymous SNV	Srpk3:NM_019684:exon3:c.T232A:p.Y78N	XqA7.3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	74367491	12A2p6	cell line	sgMsh2	74367491	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.626	114	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.A459G:p.K153K,Gm44504:NM_001278271:exon7:c.A459G:p.K153K,Gm44504:NM_001278272:exon7:c.A459G:p.K153K"	XqA7.3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTT	synonymous	T	5	TTTTT	NA
M8_p20	chrX	79517244	12A2p6	cell line	sgMsh2	79517244	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	20	0	0	NA	exonic	Cfap47	synonymous SNV	Cfap47:NM_001368718:exon1:c.T42C:p.D14D	XqB	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAT	synonymous	NA	NA	NA	NA
M8_p20	chrX	86747655	12A2p6	cell line	sgMsh2	86747655	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	83	0	0	NA	exonic	Il1rapl1	nonsynonymous SNV	Il1rapl1:NM_001160403:exon11:c.C1678T:p.P560S	XqC1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	87300643	12A2p6	cell line	sgMsh2	87300643	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.51	75	0	0	NA	exonic	Il1rapl1	synonymous SNV	Il1rapl1:NM_001160403:exon5:c.C645A:p.T215T	XqC1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGG	synonymous	NA	NA	NA	NA
M8_p20	chrX	92119792	12A2p6	cell line	sgMsh2	92119792	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.533	66	0	0	NA	exonic	Mageb18	synonymous SNV	Mageb18:NM_173783:exon5:c.C843A:p.S281S	XqC2	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGG	synonymous	GGAA	8	GGAAGGAA	NA
M8_p20	chrX	93734906	12A2p6	cell line	sgMsh2	93734906	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	118	0	0	NA	exonic	Pcyt1b	nonsynonymous SNV	"Pcyt1b:NM_177546:exon7:c.G760A:p.E254K,Pcyt1b:NM_211138:exon7:c.G850A:p.E284K"	XqC3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	96152584	12A2p6	cell line	sgMsh2	96152584	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.508	106	0	0	NA	exonic	Msn	nonsynonymous SNV	Msn:NM_010833:exon4:c.T253C:p.Y85H	XqC3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	100768396	12A2p6	cell line	sgMsh2	100768396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	0	0	NA	exonic	Dlg3	nonsynonymous SNV	"Dlg3:NM_001177778:exon1:c.T325C:p.C109R,Dlg3:NM_001290402:exon1:c.T325C:p.C109R,Dlg3:NM_016747:exon1:c.T325C:p.C109R"	XqC3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	101258606	12A2p6	cell line	sgMsh2	101258606	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.483	32	0	0	NA	exonic	Foxo4	frameshift deletion	Foxo4:NM_018789:exon2:c.883delG:p.V297Sfs*8	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
M8_p20	chrX	101268087	12A2p6	cell line	sgMsh2	101268087	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	57	0	0	NA	exonic	Il2rg	nonsynonymous SNV	"Il2rg:NM_001308535:exon1:c.T83C:p.L28P,Il2rg:NM_013563:exon1:c.T83C:p.L28P"	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	101673545	12A2p6	cell line	sgMsh2	101673545	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.468	82	0	0	NA	exonic	Ogt	frameshift deletion	"Ogt:NM_001290535:exon18:c.2239delA:p.K747Nfs*22,Ogt:NM_139144:exon18:c.2269delA:p.K757Nfs*22"	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
M8_p20	chrX	102143329	12A2p6	cell line	sgMsh2	102143329	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.566	67	0	0	NA	exonic	Ercc6l	synonymous SNV	Ercc6l:NM_146235:exon2:c.T3573C:p.Y1191Y	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAT	synonymous	NA	NA	NA	NA
M8_p20	chrX	104086447	12A2p6	cell line	sgMsh2	104086447	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	121	0	0	NA	exonic	Nexmif	synonymous SNV	Nexmif:NM_001077354:exon4:c.A1863G:p.S621S	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATG	synonymous	NA	NA	NA	NA
M8_p20	chrX	105819485	12A2p6	cell line	sgMsh2	105819485	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.55	59	0	0	NA	exonic	Atrx	nonsynonymous SNV	Atrx:NM_009530:exon29:c.C6311G:p.S2104C	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	107102671	12A2p6	cell line	sgMsh2	107102671	C	T	SNV	Mutect2;MuSe;Vardict	3	0.076	224	0	0	NA	exonic	P2ry10	nonsynonymous SNV	"P2ry10:NM_001357810:exon3:c.C211T:p.H71Y,P2ry10:NM_172435:exon3:c.C211T:p.H71Y"	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TCA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	108749307	12A2p6	cell line	sgMsh2	108749307	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.497	170	0	0	NA	exonic	Brwd3	nonsynonymous SNV	Brwd3:NM_001081477:exon40:c.A4621G:p.N1541D	XqD	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	122395389	12A2p6	cell line	sgMsh2	122395389	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	66	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.A1631G:p.K544R	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	122395705	12A2p6	cell line	sgMsh2	122395705	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.558	84	0	0	NA	exonic	Nap1l3	nonsynonymous SNV	Nap1l3:NM_138742:exon1:c.G1315T:p.G439C	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	133588435	12A2p6	cell line	sgMsh2	133588435	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.433	57	0	0	NA	exonic	Pcdh19	synonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2847C:p.A949A,Pcdh19:NM_001105245:exon6:c.T2991C:p.A997A"	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TAG	synonymous	NA	NA	NA	NA
M8_p20	chrX	133588496	12A2p6	cell line	sgMsh2	133588496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	66	0	0	NA	exonic	Pcdh19	nonsynonymous SNV	"Pcdh19:NM_001105246:exon5:c.T2786C:p.M929T,Pcdh19:NM_001105245:exon6:c.T2930C:p.M977T"	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	133897302	12A2p6	cell line	sgMsh2	133897302	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	47	0	0	NA	exonic	Tspan6	nonsynonymous SNV	Tspan6:NM_019656:exon2:c.T98C:p.V33A	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	134545502	12A2p6	cell line	sgMsh2	134545502	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.446	86	0	0	NA	exonic	Btk	nonsynonymous SNV	Btk:NM_013482:exon18:c.A1888G:p.M630V	XqE3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	141675887	12A2p6	cell line	sgMsh2	141675887	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.656	23	0	0	NA	exonic	Col4a5	stopgain	"Col4a5:NM_001163155:exon47:c.T4479A:p.Y1493X,Col4a5:NM_007736:exon48:c.T4479A:p.Y1493X"	XqF2	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	ATG	nonsynonymous	TGTA	8	TGTATGTA	NA
M8_p20	chrX	143733165	12A2p6	cell line	sgMsh2	143733165	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	55	0	0	NA	exonic	Pak3	nonsynonymous SNV	"Pak3:NM_001195047:exon6:c.C625T:p.P209S,Pak3:NM_008778:exon6:c.C562T:p.P188S,Pak3:NM_001195046:exon7:c.C670T:p.P224S,Pak3:NM_001195048:exon7:c.C607T:p.P203S,Pak3:NM_001195049:exon9:c.C562T:p.P188S"	XqF2	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TCC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	143923316	12A2p6	cell line	sgMsh2	143923316	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	49	0	0	NA	exonic	Dcx	stopgain	"Dcx:NM_001110222:exon3:c.C478T:p.Q160X,Dcx:NM_001110223:exon3:c.C478T:p.Q160X,Dcx:NM_001110224:exon3:c.C478T:p.Q160X,Dcx:NM_010025:exon3:c.C478T:p.Q160X"	XqF2	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	TGG	nonsynonymous	G	5	GGGGG	NA
M8_p20	chrX	151430449	12A2p6	cell line	sgMsh2	151430449	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	80	0	0	NA	exonic	Fam120c	nonsynonymous SNV	Fam120c:NM_198105:exon7:c.A1382G:p.N461S	XqF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	154924586	12A2p6	cell line	sgMsh2	154924586	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	469	0	0	NA	exonic	Magea6	nonsynonymous SNV	Magea6:NM_020019:exon2:c.C473A:p.P158H	XqF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	154948718	12A2p6	cell line	sgMsh2	154948718	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.538	169	0	0	NA	exonic	Magea3	nonsynonymous SNV	Magea3:NM_020017:exon1:c.G788T:p.R263M	XqF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	155281622	12A2p6	cell line	sgMsh2	155281622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	263	0	0	NA	exonic	Acot9	nonsynonymous SNV	"Acot9:NM_019736:exon6:c.T382C:p.Y128H,Acot9:NM_001313718:exon7:c.T205C:p.Y69H"	XqF3	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrX	167306849	12A2p6	cell line	sgMsh2	167306849	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	44	0	0	NA	exonic	Tlr7	nonsynonymous SNV	"Tlr7:NM_001290757:exon3:c.A1640G:p.Y547C,Tlr7:NM_133211:exon3:c.A1640G:p.Y547C,Tlr7:NM_001290756:exon4:c.A1640G:p.Y547C,Tlr7:NM_001290758:exon4:c.A1649G:p.Y550C,Tlr7:NM_001290755:exon5:c.A1640G:p.Y547C"	XqF5	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
M8_p20	chrY	927417	12A2p6	cell line	sgMsh2	927417	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.444	132	0	0	NA	exonic	Kdm5d	nonsynonymous SNV	Kdm5d:NM_011419:exon14:c.T2036C:p.L679P	YqA1	NA	NA	NA	NA	0.9	4.068082914	NA	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	6244119	PW1766tail	autochthonous	sgMsh2 aCD4/8	6244119	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	255	84	16	0.19047619	exonic	Rb1cc1	synonymous SNV	Rb1cc1:NM_009826:exon8:c.T1014C:p.I338I	1qA1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.756121019	1	0.9996408	TTA	synonymous	NA	NA	NA	NA
PW1766T2	chr1	8583270	PW1766tail	autochthonous	sgMsh2 aCD4/8	8583270	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.022	309	0	0	NA	exonic	Sntg1	nonsynonymous SNV	"Sntg1:NM_001290393:exon13:c.G745A:p.A249T,Sntg1:NM_001290390:exon14:c.G742A:p.A248T,Sntg1:NM_027671:exon14:c.G745A:p.A249T"	1qA1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.086189961	3	1	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	26682929	PW1766tail	autochthonous	sgMsh2 aCD4/8	26682929	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	286	0	0	NA	exonic	4931408C20Rik	stopgain	4931408C20Rik:NM_001033764:exon2:c.G3169T:p.G1057X	1qA5	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.329088941	2	0.756459	CCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	36417462	PW1766tail	autochthonous	sgMsh2 aCD4/8	36417462	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	222	0	0	NA	exonic	Fer1l5	nonsynonymous SNV	Fer1l5:NM_001277076:exon43:c.A4708G:p.T1570A	1qB	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.156709019	3	1.23E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	53347577	PW1766tail	autochthonous	sgMsh2 aCD4/8	53347577	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	496	162	33	0.203703704	exonic	Asnsd1	nonsynonymous SNV	Asnsd1:NM_133728:exon4:c.G890A:p.R297H	1qC1.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.662095607	2	0.9981477	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	54532037	PW1766tail	autochthonous	sgMsh2 aCD4/8	54532037	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	307	116	13	0.112068966	exonic	Pgap1	synonymous SNV	Pgap1:NM_001163314:exon7:c.T912C:p.D304D	1qC1.2	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.195886274	3	1.07E-09	CAT	synonymous	NA	NA	NA	NA
PW1766T2	chr1	59845496	PW1766tail	autochthonous	sgMsh2 aCD4/8	59845496	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	113	55	6	0.109090909	exonic	Bmpr2	nonsynonymous SNV	Bmpr2:NM_007561:exon6:c.T640C:p.Y214H	1qC2	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.65034243	2	0.8102562	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	64042326	PW1766tail	autochthonous	sgMsh2 aCD4/8	64042326	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	148	78	10	0.128205128	exonic	Klf7	nonsynonymous SNV	Klf7:NM_033563:exon3:c.A842C:p.N281T	1qC2	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.360430745	2	0.9625815	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	66695534	PW1766tail	autochthonous	sgMsh2 aCD4/8	66695534	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	135	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368825:exon64:c.T9724A:p.F3242I,Unc80:NM_001368824:exon65:c.T9964A:p.F3322I,Unc80:NM_175510:exon65:c.T9919A:p.F3307I"	1qC3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.450538431	2	0.999964	GTT	nonsynonymous	"CCAG, TTCACT"	"8, 12"	"CCAGCCAG, TTCACTTTCACT"	NA
PW1766T2	chr1	74605396	PW1766tail	autochthonous	sgMsh2 aCD4/8	74605396	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	160	4	0	0	exonic	Stk36	nonsynonymous SNV	Stk36:NM_175031:exon5:c.C311T:p.A104V	1qC3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.583741097	2	0.9992294	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	74633202	PW1766tail	autochthonous	sgMsh2 aCD4/8	74633202	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	124	3	0	0	exonic	Stk36	nonsynonymous SNV	Stk36:NM_175031:exon24:c.T2825C:p.L942P	1qC3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.709108313	1	0.8342898	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	75139893	PW1766tail	autochthonous	sgMsh2 aCD4/8	75139893	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	187	285	38	0.133333333	exonic	Cnppd1	nonsynonymous SNV	"Cnppd1:NM_001356264:exon3:c.T188C:p.V63A,Cnppd1:NM_026977:exon5:c.T188C:p.V63A"	1qC4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.716943764	1	0.9379815	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	75186710	PW1766tail	autochthonous	sgMsh2 aCD4/8	75186710	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	88	62	13	0.209677419	exonic	Atg9a	nonsynonymous SNV	"Atg9a:NM_001003917:exon8:c.T745C:p.Y249H,Atg9a:NM_001288612:exon8:c.T745C:p.Y249H,Atg9a:NM_001288613:exon8:c.T91C:p.Y31H"	1qC4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.716943764	1	0.8423117	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	85699672	PW1766tail	autochthonous	sgMsh2 aCD4/8	85699672	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	196	11	0	0	exonic	Sp100	nonsynonymous SNV	"Sp100:NM_001313713:exon14:c.G1231A:p.E411K,Sp100:NM_001372232:exon14:c.G1210A:p.E404K,Sp100:NM_001313712:exon15:c.G1285A:p.E429K,Sp100:NM_001372231:exon15:c.G1285A:p.E429K,Sp100:NM_013673:exon15:c.G1285A:p.E429K"	1qC5	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.865817332	1	0.9999999	CGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	88212086	PW1766tail	autochthonous	sgMsh2 aCD4/8	88212086	G	A	SNV	Mutect2;Strelka2	2	0.018	917	0	0	NA	exonic	Ugt1a1	nonsynonymous SNV	Ugt1a1:NM_201645:exon1:c.G85A:p.A29T	1qD	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.070519059	3	1	CGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	94024443	PW1766tail	autochthonous	sgMsh2 aCD4/8	94024443	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	137	0	0	NA	exonic	Neu4	nonsynonymous SNV	"Neu4:NM_173772:exon4:c.C464T:p.A155V,Neu4:NM_001310769:exon5:c.C533T:p.A178V"	1qD	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.681684234	1	0.5036895	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	111860518	PW1766tail	autochthonous	sgMsh2 aCD4/8	111860518	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	241	6	1	0.166666667	exonic	Dsel	synonymous SNV	Dsel:NM_001081316:exon2:c.C2286A:p.P762P	1qE2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.199804	3	1.91E-08	AGG	synonymous	NA	NA	NA	NA
PW1766T2	chr1	125584489	PW1766tail	autochthonous	sgMsh2 aCD4/8	125584489	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	192	92	10	0.108695652	exonic	Slc35f5	nonsynonymous SNV	"Slc35f5:NM_001356294:exon11:c.C1091A:p.A364D,Slc35f5:NM_028787:exon11:c.C1025A:p.A342D"	1qE2.3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.68560196	1	0.5145589	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	133294670	PW1766tail	autochthonous	sgMsh2 aCD4/8	133294670	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	57	7	1	0.142857143	exonic	Plekha6	nonsynonymous SNV	"Plekha6:NM_001160268:exon21:c.T3056C:p.L1019P,Plekha6:NM_182930:exon25:c.T3368C:p.L1123P"	1qE4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.810969175	1	0.9773297	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	135845642	PW1766tail	autochthonous	sgMsh2 aCD4/8	135845642	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	108	476	1	0.00210084	exonic	Tnnt2	frameshift deletion	"Tnnt2:NM_001130180:exon4:c.137delA:p.E47Rfs*15,Tnnt2:NM_001130181:exon4:c.221delA:p.E75Rfs*15,Tnnt2:NM_011619:exon4:c.137delA:p.E47Rfs*15,Tnnt2:NM_001130178:exon5:c.149delA:p.E51Rfs*15,Tnnt2:NM_001130179:exon5:c.233delA:p.E79Rfs*15"	1qE4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.638589254	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1766T2	chr1	150101274	PW1766tail	autochthonous	sgMsh2 aCD4/8	150101274	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.025	254	209	2	0.009569378	exonic	Ptgs2	synonymous SNV	Ptgs2:NM_011198:exon3:c.C231T:p.I77I	1qG1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.097943137	3	1.00E-09	TCC	synonymous	NA	NA	NA	NA
PW1766T2	chr1	153154431	PW1766tail	autochthonous	sgMsh2 aCD4/8	153154431	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	158	418	58	0.138755981	exonic	Lamc2	nonsynonymous SNV	Lamc2:NM_008485:exon5:c.G464T:p.C155F	1qG3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.603329725	2	0.9965794	ACA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	153435764	PW1766tail	autochthonous	sgMsh2 aCD4/8	153435764	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	269	0	0	NA	exonic	Shcbp1l	frameshift deletion	Shcbp1l:NM_001033162:exon4:c.730delT:p.Y246Mfs*83	1qG3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.658177881	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW1766T2	chr1	155158911	PW1766tail	autochthonous	sgMsh2 aCD4/8	155158911	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.143	31	50	6	0.12	exonic	Stx6	nonsynonymous SNV	Stx6:NM_021433:exon1:c.T19C:p.F7L	1qG3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.560234744	2	0.7440482	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	156376614	PW1766tail	autochthonous	sgMsh2 aCD4/8	156376614	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	256	0	0	NA	exonic	Axdnd1	synonymous SNV	Axdnd1:NM_001346967:exon16:c.T1671C:p.F557F	1qG3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.932418665	1	1.00E-09	CAA	synonymous	NA	NA	NA	NA
PW1766T2	chr1	157157458	PW1766tail	autochthonous	sgMsh2 aCD4/8	157157458	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	195	11	0	0	exonic	Rasal2	synonymous SNV	Rasal2:NM_177644:exon14:c.A2718G:p.A906A	1qG3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.955925018	1	1.05E-09	GTG	synonymous	NA	NA	NA	NA
PW1766T2	chr1	158765036	PW1766tail	autochthonous	sgMsh2 aCD4/8	158765036	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.203	118	0	0	NA	exonic	Pappa2	frameshift deletion	Pappa2:NM_001085376:exon18:c.4770delC:p.V1591Wfs*67	1qH1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.795298273	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW1766T2	chr1	160965677	PW1766tail	autochthonous	sgMsh2 aCD4/8	160965677	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	162	41	14	0.341463415	exonic	Rc3h1	nonsynonymous SNV	Rc3h1:NM_001024952:exon19:c.A3131G:p.N1044S	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.654260156	2	0.8928965	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	162968792	PW1766tail	autochthonous	sgMsh2 aCD4/8	162968792	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	279	3	0	0	exonic	Fmo3	synonymous SNV	Fmo3:NM_008030:exon3:c.A210C:p.P70P	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.415278901	2	0.9999998	CTG	synonymous	NA	NA	NA	NA
PW1766T2	chr1	163072017	PW1766tail	autochthonous	sgMsh2 aCD4/8	163072017	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	347	0	0	NA	exonic	Mroh9	nonsynonymous SNV	Mroh9:NM_030071:exon7:c.G381A:p.M127I	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.227228078	3	3.45E-09	CCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	163825775	PW1766tail	autochthonous	sgMsh2 aCD4/8	163825775	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	200	68	2	0.029411765	exonic	Kifap3	nonsynonymous SNV	"Kifap3:NM_001305643:exon9:c.A929T:p.K310M,Kifap3:NM_010629:exon9:c.A929T:p.K310M"	1qH2.1	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.231145804	3	0.9999844	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	171277187	PW1766tail	autochthonous	sgMsh2 aCD4/8	171277187	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	200	36	1	0.027777778	exonic	Ppox	nonsynonymous SNV	Ppox:NM_008911:exon13:c.A1304G:p.Q435R	1qH3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.191968549	3	0.9999999	TTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	172376784	PW1766tail	autochthonous	sgMsh2 aCD4/8	172376784	-	GGTCGCCCT	Insertion	Strelka2;Vardict	2	0.1704	135	57	0	0	exonic	Pigm	nonframeshift insertion	Pigm:NM_026234:exon1:c.86_87insGGTCGCCCT:p.V33_F34insALV	1qH3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.667580423	NA	NA	CGG	inframe	NA	NA	NA	9
PW1766T2	chr1	175606071	PW1766tail	autochthonous	sgMsh2 aCD4/8	175606071	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	90	191	53	0.277486911	exonic	Fh1	nonsynonymous SNV	Fh1:NM_010209:exon8:c.T1211C:p.V404A	1qH3	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.80705145	1	0.9952721	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	178915579	PW1766tail	autochthonous	sgMsh2 aCD4/8	178915579	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	81	2	0	0	exonic	Kif26b	nonsynonymous SNV	Kif26b:NM_001161665:exon12:c.A3239G:p.Y1080C	1qH4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.250734431	3	0.9756075	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	179752918	PW1766tail	autochthonous	sgMsh2 aCD4/8	179752918	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	402	146	25	0.171232877	exonic	Ahctf1	synonymous SNV	Ahctf1:NM_026375:exon33:c.A5718G:p.K1906K	1qH4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.666013332	2	0.985879	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr1	180952982	PW1766tail	autochthonous	sgMsh2 aCD4/8	180952982	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	247	91	21	0.230769231	exonic	Tmem63a	nonsynonymous SNV	Tmem63a:NM_144794:exon5:c.G332A:p.G111E	1qH4	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.763956469	1	0.9998118	GGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	185394387	PW1766tail	autochthonous	sgMsh2 aCD4/8	185394387	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	349	181	7	0.038674033	exonic	Eprs	nonsynonymous SNV	"Eprs:NM_029735:exon13:c.T1519C:p.Y507H,Eprs:NM_001357474:exon14:c.T1540C:p.Y514H"	1qH5	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.125367216	3	1	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr1	188466125	PW1766tail	autochthonous	sgMsh2 aCD4/8	188466125	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	41	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon20:c.C4385T:p.A1462V	1qH6	chr1-4867294-195062457	4	2	2	0.722	2.8285978	NA	1	0.877570509	1	0.9844484	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	24027821	PW1766tail	autochthonous	sgMsh2 aCD4/8	24027821	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	396	0	0	NA	exonic	Taar7d	synonymous SNV	Taar7d:NM_001010838:exon1:c.C600T:p.T200T	10qA4	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.148873568	3	1	CCT	synonymous	NA	NA	NA	NA
PW1766T2	chr10	26986870	PW1766tail	autochthonous	sgMsh2 aCD4/8	26986870	T	C	SNV	Mutect2;Vardict	2	0.084	103	0	0	NA	exonic	Lama2	nonsynonymous SNV	Lama2:NM_008481:exon62:c.A8896G:p.T2966A	10qA4	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.329088941	2	0.5589079	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	41556025	PW1766tail	autochthonous	sgMsh2 aCD4/8	41556025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	120	0	0	NA	exonic	Ccdc162	nonsynonymous SNV	Ccdc162:NM_001358562:exon40:c.A5471G:p.E1824G	10qB2	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.517139764	2	0.9998466	TTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	53920194	PW1766tail	autochthonous	sgMsh2 aCD4/8	53920194	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.232	57	142	29	0.204225352	exonic	Man1a	synonymous SNV	Man1a:NM_008548:exon10:c.C1401T:p.G467G	10qB3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.908912312	1	0.9981273	GGC	synonymous	C	5	CCCCC	NA
PW1766T2	chr10	59352250	PW1766tail	autochthonous	sgMsh2 aCD4/8	59352250	A	G	SNV	Mutect2;Vardict	2	0.047	92	307	6	0.019543974	exonic	P4ha1	synonymous SNV	"P4ha1:NM_001316370:exon7:c.A828G:p.A276A,P4ha1:NM_001316371:exon8:c.A1068G:p.A356A,P4ha1:NM_011030:exon8:c.A1068G:p.A356A"	10qB4	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.184133098	3	0.9996061	CAA	synonymous	NA	NA	NA	NA
PW1766T2	chr10	61300340	PW1766tail	autochthonous	sgMsh2 aCD4/8	61300340	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	68	0	0	NA	exonic	Prf1	synonymous SNV	Prf1:NM_011073:exon2:c.C394T:p.L132L	10qB4	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999604	GCT	synonymous	NA	NA	NA	NA
PW1766T2	chr10	61548208	PW1766tail	autochthonous	sgMsh2 aCD4/8	61548208	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	146	20	4	0.2	exonic	Lrrc20	synonymous SNV	Lrrc20:NM_153542:exon4:c.G393A:p.E131E	10qB4	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	1.84E-09	AGA	synonymous	NA	NA	NA	NA
PW1766T2	chr10	79863186	PW1766tail	autochthonous	sgMsh2 aCD4/8	79863186	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	72	691	298	0.431259045	exonic	Ptbp1	nonsynonymous SNV	"Ptbp1:NM_001283013:exon13:c.A1379G:p.E460G,Ptbp1:NM_008956:exon13:c.A1499G:p.E500G,Ptbp1:NM_001077363:exon14:c.A1577G:p.E526G"	10qC1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999772	GAG	nonsynonymous	GGA	8	GGAGGAGG	NA
PW1766T2	chr10	79896508	PW1766tail	autochthonous	sgMsh2 aCD4/8	79896508	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	91	32	9	0.28125	exonic	Med16	nonsynonymous SNV	"Med16:NM_001163276:exon13:c.C2224A:p.L742M,Med16:NM_198107:exon13:c.C2227A:p.L743M"	10qC1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999983	AGG	nonsynonymous	GCAG	13	AGGCAGCAGGCAG	NA
PW1766T2	chr10	81214824	PW1766tail	autochthonous	sgMsh2 aCD4/8	81214824	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	137	0	0	NA	exonic	Atcay	nonsynonymous SNV	Atcay:NM_178662:exon4:c.G256A:p.D86N	10qC1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	3.90E-09	TCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	88488467	PW1766tail	autochthonous	sgMsh2 aCD4/8	88488467	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.307	160	76	4	0.052631579	exonic	Chpt1	synonymous SNV	"Chpt1:NM_001146690:exon3:c.T478C:p.L160L,Chpt1:NM_144807:exon3:c.T478C:p.L160L"	10qC1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	1.12E-09	AAC	synonymous	NA	NA	NA	NA
PW1766T2	chr10	88795507	PW1766tail	autochthonous	sgMsh2 aCD4/8	88795507	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.25	71	7	0	0	exonic	Utp20	frameshift insertion	Utp20:NM_175158:exon22:c.2610dupA:p.G871Rfs*6	10qC1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.979431371	NA	NA	CCT	frameshift	T	5	TTTTT	1
PW1766T2	chr10	100472025	PW1766tail	autochthonous	sgMsh2 aCD4/8	100472025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	132	17	1	0.058823529	exonic	Tmtc3	nonsynonymous SNV	"Tmtc3:NM_001033332:exon5:c.A529G:p.T177A,Tmtc3:NM_001110013:exon5:c.A529G:p.T177A"	10qD1	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	6.78E-09	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	114444764	PW1766tail	autochthonous	sgMsh2 aCD4/8	114444764	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	174	0	0	NA	exonic	Trhde	nonsynonymous SNV	Trhde:NM_146241:exon15:c.A2581C:p.M861L	10qD2	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.760038744	1	0.9974198	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	118860267	PW1766tail	autochthonous	sgMsh2 aCD4/8	118860267	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	209	125	49	0.392	exonic	Dyrk2	nonsynonymous SNV	Dyrk2:NM_001014390:exon3:c.T1085C:p.I362T	10qD2	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	128388942	PW1766tail	autochthonous	sgMsh2 aCD4/8	128388942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.027	245	21	0	0	exonic	Ankrd52	nonsynonymous SNV	Ankrd52:NM_172790:exon22:c.T2446C:p.F816L	10qD3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.105778588	3	1.00E-09	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr10	129857079	PW1766tail	autochthonous	sgMsh2 aCD4/8	129857079	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	391	0	0	NA	exonic	Olfr813	nonsynonymous SNV	Olfr813:NM_207147:exon1:c.G560A:p.C187Y	10qD3	chr10-4453448-130453386	2	1	1	0.722	2.8285978	NA	1	0.505386588	2	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	4103782	PW1766tail	autochthonous	sgMsh2 aCD4/8	4103782	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	154	2	0	0	exonic	Sec14l2	nonsynonymous SNV	Sec14l2:NM_144520:exon10:c.A803G:p.Y268C	11qA1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.912830038	1	0.9999999	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	5614545	PW1766tail	autochthonous	sgMsh2 aCD4/8	5614545	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	180	0	0	NA	exonic	Ankrd36	synonymous SNV	Ankrd36:NM_023816:exon12:c.A1266G:p.L422L	11qA1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.376101647	2	0.9966795	TAG	synonymous	NA	NA	NA	NA
PW1766T2	chr11	5870291	PW1766tail	autochthonous	sgMsh2 aCD4/8	5870291	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	68	19	5	0.263157895	exonic	Aebp1	synonymous SNV	"Aebp1:NM_001291857:exon18:c.T2409A:p.I803I,Aebp1:NM_009636:exon18:c.T2406A:p.I802I"	11qA1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.622918352	2	0.8045101	TTT	synonymous	NA	NA	NA	NA
PW1766T2	chr11	5955987	PW1766tail	autochthonous	sgMsh2 aCD4/8	5955987	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	56	237	81	0.341772152	exonic	Ykt6	synonymous SNV	Ykt6:NM_019661:exon1:c.T87C:p.S29S	11qA1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	1	0.9997923	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr11	14600013	PW1766tail	autochthonous	sgMsh2 aCD4/8	14600013	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.111	51	0	0	NA	exonic	Pom121l12	frameshift deletion	Pom121l12:NM_001164166:exon1:c.718delG:p.K242Rfs*17	11qA2	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.434867529	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW1766T2	chr11	22518498	PW1766tail	autochthonous	sgMsh2 aCD4/8	22518498	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	166	11	8	0.727272727	exonic	Tmem17	nonsynonymous SNV	Tmem17:NM_153596:exon4:c.A436G:p.I146V	11qA3.2	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	1	1.05E-09	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	43443382	PW1766tail	autochthonous	sgMsh2 aCD4/8	43443382	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	90	69	8	0.115942029	exonic	Slu7	nonsynonymous SNV	"Slu7:NM_198936:exon12:c.C1234T:p.R412W,Slu7:NM_148673:exon13:c.C1234T:p.R412W"	11qB1.1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.28599396	3	0.8966012	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	46679702	PW1766tail	autochthonous	sgMsh2 aCD4/8	46679702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	147	0	0	NA	exonic	Timd2	nonsynonymous SNV	"Timd2:NM_001161355:exon5:c.A545G:p.Y182C,Timd2:NM_001161356:exon5:c.A545G:p.Y182C,Timd2:NM_134249:exon5:c.A545G:p.Y182C"	11qB1.1	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	1	1.73E-09	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	69319926	PW1766tail	autochthonous	sgMsh2 aCD4/8	69319926	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	74	8	4	0.5	exonic	Cntrob	stopgain	Cntrob:NM_172560:exon5:c.C628T:p.Q210X	11qB3	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	0.877570509	1	0.9989755	TGC	nonsynonymous	TGT	8	TGTTGTTG	NA
PW1766T2	chr11	69406708	PW1766tail	autochthonous	sgMsh2 aCD4/8	69406708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	217	25	5	0.2	exonic	Kdm6b	nonsynonymous SNV	Kdm6b:NM_001017426:exon10:c.C904T:p.P302S	11qB3	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	69555971	PW1766tail	autochthonous	sgMsh2 aCD4/8	69555971	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	25	0	0	NA	exonic	Efnb3	synonymous SNV	Efnb3:NM_007911:exon5:c.C912T:p.D304D	11qB3	chr11-3133205-69579350	2	1	1	0.722	2.8285978	NA	1	1	1	0.9852362	GGT	synonymous	G	6	GGGGGG	NA
PW1766T2	chr11	72740493	PW1766tail	autochthonous	sgMsh2 aCD4/8	72740493	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	116	31	1	0.032258065	exonic	Ankfy1	nonsynonymous SNV	Ankfy1:NM_009671:exon10:c.C1264T:p.P422S	11qB4	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.250734431	3	0.9943303	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	73964873	PW1766tail	autochthonous	sgMsh2 aCD4/8	73964873	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.018	417	0	0	NA	exonic	Olfr397	synonymous SNV	Olfr397:NM_146346:exon1:c.A264G:p.Q88Q	11qB4	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.070519059	3	1	AAG	synonymous	NA	NA	NA	NA
PW1766T2	chr11	74905937	PW1766tail	autochthonous	sgMsh2 aCD4/8	74905937	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	107	76	32	0.421052632	exonic	Srr;Tsr1	nonsynonymous SNV	Tsr1:NM_177325:exon11:c.A1814C:p.E605A	11qB5	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.889323685	1	0.9999622	GAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	77090438	PW1766tail	autochthonous	sgMsh2 aCD4/8	77090438	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	176	0	0	NA	exonic	Efcab5	nonsynonymous SNV	Efcab5:NM_176965:exon18:c.T4081C:p.Y1361H	11qB5	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	79411604	PW1766tail	autochthonous	sgMsh2 aCD4/8	79411604	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	199	16	6	0.375	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon9:c.T997C:p.Y333H	11qB5	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	TTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	80586878	PW1766tail	autochthonous	sgMsh2 aCD4/8	80586878	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.327	231	27	1	0.037037037	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon20:c.A2678G:p.Y893C	11qB5	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	85010066	PW1766tail	autochthonous	sgMsh2 aCD4/8	85010066	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	122	46	13	0.282608696	exonic	Usp32	synonymous SNV	Usp32:NM_001029934:exon27:c.T3327C:p.C1109C	11qC	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	2.40E-08	TAC	synonymous	GTACA	10	GTACAGTACA	NA
PW1766T2	chr11	85234758	PW1766tail	autochthonous	sgMsh2 aCD4/8	85234758	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	67	67	19	0.28358209	exonic	Appbp2	nonsynonymous SNV	Appbp2:NM_025825:exon1:c.A52G:p.I18V	11qC	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999545	ATG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	98970530	PW1766tail	autochthonous	sgMsh2 aCD4/8	98970530	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	71	85	38	0.447058824	exonic	Rara	nonsynonymous SNV	"Rara:NM_001176528:exon5:c.A659C:p.D220A,Rara:NM_001361954:exon5:c.A311C:p.D104A,Rara:NM_001177303:exon6:c.A668C:p.D223A,Rara:NM_009024:exon6:c.A668C:p.D223A,Rara:NM_001177302:exon7:c.A668C:p.D223A"	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999738	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	99597828	PW1766tail	autochthonous	sgMsh2 aCD4/8	99597828	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	79	0	0	NA	exonic	Krtap9-3	nonsynonymous SNV	Krtap9-3:NM_029351:exon1:c.A227G:p.D76G	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999913	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	100432975	PW1766tail	autochthonous	sgMsh2 aCD4/8	100432975	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	97	151	11	0.072847682	exonic	Nt5c3b	nonsynonymous SNV	"Nt5c3b:NM_001362966:exon6:c.G486A:p.M162I,Nt5c3b:NM_001362967:exon6:c.G381A:p.M127I,Nt5c3b:NM_001102650:exon7:c.G510A:p.M170I,Nt5c3b:NM_026561:exon8:c.G510A:p.M170I"	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.391772548	2	0.9794598	TCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	102308274	PW1766tail	autochthonous	sgMsh2 aCD4/8	102308274	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	64	216	82	0.37962963	exonic	Ubtf	nonsynonymous SNV	"Ubtf:NM_001362549:exon12:c.C1373T:p.S458F,Ubtf:NM_001362550:exon14:c.C893T:p.S298F,Ubtf:NM_001044383:exon15:c.C1559T:p.S520F,Ubtf:NM_001302954:exon15:c.C1559T:p.S520F,Ubtf:NM_001302955:exon15:c.C1559T:p.S520F,Ubtf:NM_001362545:exon15:c.C1670T:p.S557F,Ubtf:NM_001362548:exon15:c.C1559T:p.S520F,Ubtf:NM_001362551:exon15:c.C536T:p.S179F,Ubtf:NM_001362544:exon16:c.C1670T:p.S557F,Ubtf:NM_001362547:exon16:c.C1559T:p.S520F,Ubtf:NM_011551:exon16:c.C1670T:p.S557F"	11qD	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999311	AGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	107042747	PW1766tail	autochthonous	sgMsh2 aCD4/8	107042747	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	119	66	10	0.151515152	exonic	Bptf	nonsynonymous SNV	"Bptf:NM_001359590:exon26:c.G8071T:p.A2691S,Bptf:NM_176850:exon26:c.G8470T:p.A2824S"	11qE1	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.799215999	1	0.9983601	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	109534056	PW1766tail	autochthonous	sgMsh2 aCD4/8	109534056	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	133	10	3	0.3	exonic	Arsg	nonsynonymous SNV	"Arsg:NM_001361977:exon6:c.G453T:p.K151N,Arsg:NM_001361975:exon8:c.G852T:p.K284N,Arsg:NM_028710:exon9:c.G852T:p.K284N"	11qE1	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	1	6.04E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	113709358	PW1766tail	autochthonous	sgMsh2 aCD4/8	113709358	G	A	SNV	Mutect2;Vardict	2	0.105	37	0	0	NA	exonic	Cpsf4l	synonymous SNV	Cpsf4l:NM_001164532:exon1:c.C132T:p.L44L	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.411361176	2	0.8375725	TGA	synonymous	NA	NA	NA	NA
PW1766T2	chr11	116295564	PW1766tail	autochthonous	sgMsh2 aCD4/8	116295564	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.29	73	43	1	0.023255814	exonic	Exoc7	frameshift deletion	"Exoc7:NM_001162872:exon7:c.934delA:p.T312Pfs*4,Exoc7:NM_001362839:exon7:c.934delA:p.T312Pfs*4,Exoc7:NM_001347636:exon8:c.1027delA:p.T343Pfs*4,Exoc7:NM_001378961:exon8:c.1003delA:p.T335Pfs*4,Exoc7:NM_016857:exon8:c.1027delA:p.T343Pfs*4,Exoc7:NM_001362838:exon9:c.1096delA:p.T366Pfs*4,Exoc7:NM_001378960:exon9:c.1096delA:p.T366Pfs*4"	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW1766T2	chr11	116544636	PW1766tail	autochthonous	sgMsh2 aCD4/8	116544636	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	74	29	15	0.517241379	exonic	Ube2o	nonsynonymous SNV	Ube2o:NM_173755:exon9:c.A1325T:p.D442V	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.979431371	1	0.9999656	ATC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	117809751	PW1766tail	autochthonous	sgMsh2 aCD4/8	117809751	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	24	158	56	0.35443038	exonic	Syngr2	nonsynonymous SNV	Syngr2:NM_009304:exon1:c.A47G:p.D16G	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.979431371	1	0.9789645	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	119436455	PW1766tail	autochthonous	sgMsh2 aCD4/8	119436455	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.115	91	2	1	0.5	exonic	Rnf213	nonsynonymous SNV	Rnf213:NM_001040005:exon26:c.A5270G:p.H1757R	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.450538431	2	0.9988164	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	120370702	PW1766tail	autochthonous	sgMsh2 aCD4/8	120370702	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	82	10	6	0.6	exonic	Faap100	nonsynonymous SNV	Faap100:NM_027980:exon8:c.A2501G:p.N834S	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.979431371	1	0.9999877	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	120617786	PW1766tail	autochthonous	sgMsh2 aCD4/8	120617786	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	34	59	12	0.203389831	exonic	Pcyt2	nonsynonymous SNV	"Pcyt2:NM_001347615:exon1:c.G67A:p.V23M,Pcyt2:NM_001363001:exon1:c.G67A:p.V23M,Pcyt2:NM_024229:exon1:c.G67A:p.V23M"	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.611165176	2	0.6239675	ACG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	121117413	PW1766tail	autochthonous	sgMsh2 aCD4/8	121117413	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	100	0	0	NA	exonic	Tex19.2	nonsynonymous SNV	Tex19.2:NM_027622:exon3:c.T208C:p.S70P	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.916747763	1	0.9999796	GAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr11	121238517	PW1766tail	autochthonous	sgMsh2 aCD4/8	121238517	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	129	45	0	0	exonic	Narf	nonsynonymous SNV	Narf:NM_026272:exon2:c.G126T:p.E42D	11qE2	chr11-69590981-121956879	2	1	1	0.722	2.8285978	NA	1	0.176297647	3	0.9999898	AGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	17549550	PW1766tail	autochthonous	sgMsh2 aCD4/8	17549550	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	229	331	11	0.033232628	exonic	Odc1	frameshift deletion	Odc1:NM_013614:exon9:c.877delA:p.T295Pfs*23	12qA1.1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.920665489	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr12	31318401	PW1766tail	autochthonous	sgMsh2 aCD4/8	31318401	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	122	137	28	0.204379562	exonic	Lamb1	nonsynonymous SNV	Lamb1:NM_008482:exon24:c.A3529G:p.T1177A	12qA2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.810969175	1	0.999254	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	35132174	PW1766tail	autochthonous	sgMsh2 aCD4/8	35132174	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	198	84	0	0	exonic	Snx13	frameshift deletion	Snx13:NM_001014973:exon21:c.2221delT:p.F742Lfs*5	12qA3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.262487607	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1766T2	chr12	35506300	PW1766tail	autochthonous	sgMsh2 aCD4/8	35506300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.283	327	37	5	0.135135135	exonic	Ahr	nonsynonymous SNV	"Ahr:NM_001314027:exon8:c.T736G:p.L246V,Ahr:NM_013464:exon9:c.T1087G:p.L363V"	12qA3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	1	1	1	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	51744649	PW1766tail	autochthonous	sgMsh2 aCD4/8	51744649	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	280	57	13	0.228070175	exonic	Hectd1	nonsynonymous SNV	Hectd1:NM_144788:exon43:c.A7705G:p.T2569A	12qB3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	1.77E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	55684610	PW1766tail	autochthonous	sgMsh2 aCD4/8	55684610	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	110	29	2	0.068965517	exonic	Ralgapa1	synonymous SNV	"Ralgapa1:NM_001003719:exon31:c.A4167G:p.S1389S,Ralgapa1:NM_001112714:exon31:c.A4167G:p.S1389S,Ralgapa1:NM_019994:exon31:c.A4167G:p.S1389S,Ralgapa1:NM_001286263:exon32:c.A4308G:p.S1436S,Ralgapa1:NM_001368814:exon32:c.A5676G:p.S1892S"	12qC1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.579823372	2	0.9925151	ATG	synonymous	NA	NA	NA	NA
PW1766T2	chr12	55747146	PW1766tail	autochthonous	sgMsh2 aCD4/8	55747146	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	212	13	1	0.076923077	exonic	Ralgapa1	nonsynonymous SNV	"Ralgapa1:NM_001003719:exon13:c.T1703G:p.V568G,Ralgapa1:NM_001112714:exon13:c.T1703G:p.V568G,Ralgapa1:NM_001286263:exon13:c.T1703G:p.V568G,Ralgapa1:NM_001368814:exon13:c.T1703G:p.V568G,Ralgapa1:NM_019994:exon13:c.T1703G:p.V568G"	12qC1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.266405333	3	0.9992708	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	70893629	PW1766tail	autochthonous	sgMsh2 aCD4/8	70893629	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	53	32	6	0.1875	exonic	Frmd6	synonymous SNV	Frmd6:NM_028127:exon11:c.C1047A:p.S349S	12qC2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.65034243	2	0.5701302	CCT	synonymous	NA	NA	NA	NA
PW1766T2	chr12	73967975	PW1766tail	autochthonous	sgMsh2 aCD4/8	73967975	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.184	194	43	9	0.209302326	exonic	Snapc1	frameshift deletion	Snapc1:NM_178392:exon2:c.253delT:p.L86Cfs*34	12qC3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.720861489	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1766T2	chr12	80666660	PW1766tail	autochthonous	sgMsh2 aCD4/8	80666660	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	199	29	7	0.24137931	exonic	Slc39a9	nonsynonymous SNV	Slc39a9:NM_026244:exon3:c.G331T:p.V111L	12qC3	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	81979104	PW1766tail	autochthonous	sgMsh2 aCD4/8	81979104	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	129	30	1	0.033333333	exonic	Pcnx	nonsynonymous SNV	Pcnx:NM_018814:exon25:c.C4622T:p.A1541V	12qD1	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.383937097	2	0.990245	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	87273711	PW1766tail	autochthonous	sgMsh2 aCD4/8	87273711	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	128	392	29	0.073979592	exonic	Ahsa1	nonsynonymous SNV	Ahsa1:NM_146036:exon9:c.A965G:p.Y322C	12qD2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.258569882	3	0.9937595	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	87464649	PW1766tail	autochthonous	sgMsh2 aCD4/8	87464649	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.233	95	188	1	0.005319149	exonic	Snw1	frameshift deletion	Snw1:NM_025507:exon3:c.231delG:p.R78Efs*47	12qD2	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.912830038	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1766T2	chr12	101065045	PW1766tail	autochthonous	sgMsh2 aCD4/8	101065045	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	186	151	53	0.350993377	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon3:c.A236G:p.D79G,Ppp4r3a:NM_211355:exon3:c.A236G:p.D79G"	12qE	chr12-3237715-103766264	3	2	1	0.722	2.8285978	NA	1	0.889323685	1	3.67E-08	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr12	105153045	PW1766tail	autochthonous	sgMsh2 aCD4/8	105153045	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	313	0	0	NA	exonic	Tcl1b2	nonsynonymous SNV	Tcl1b2:NM_013775:exon2:c.C191A:p.P64H	12qE	chr12-103980089-118301289	3	2	1	0.722	2.8285978	NA	1	0.575905646	2	0.9999999	CCC	nonsynonymous	C	5	CCCCC	NA
PW1766T2	chr12	110779332	PW1766tail	autochthonous	sgMsh2 aCD4/8	110779332	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	136	71	6	0.084507042	exonic	Wdr20	nonsynonymous SNV	"Wdr20:NM_001347428:exon2:c.T286C:p.Y96H,Wdr20:NM_027149:exon2:c.T286C:p.Y96H,Wdr20:NM_001364272:exon3:c.T166C:p.Y56H"	12qF1	chr12-103980089-118301289	3	2	1	0.722	2.8285978	NA	1	0.152791294	3	0.9999992	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	23551553	PW1766tail	autochthonous	sgMsh2 aCD4/8	23551553	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	433	5	4	0.8	exonic	H4c6	nonsynonymous SNV	H4c6:NM_175655:exon1:c.A91G:p.T31A	13qA3.1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.916747763	1	1	GTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	23571676	PW1766tail	autochthonous	sgMsh2 aCD4/8	23571676	G	A	SNV	Mutect2;MuSe;Vardict	3	0.096	217	25	3	0.12	exonic	H2bc8	nonsynonymous SNV	H2bc8:NM_178196:exon1:c.G244A:p.A82T	13qA3.1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.376101647	2	0.9990248	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	30381888	PW1766tail	autochthonous	sgMsh2 aCD4/8	30381888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	213	0	0	NA	exonic	Agtr1a	nonsynonymous SNV	Agtr1a:NM_177322:exon3:c.A935G:p.Y312C	13qA3.2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.501468862	2	2.19E-08	TAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	46681576	PW1766tail	autochthonous	sgMsh2 aCD4/8	46681576	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	178	133	20	0.15037594	exonic	Nup153	nonsynonymous SNV	Nup153:NM_175749:exon21:c.T4252G:p.S1418A	13qA5	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.603329725	2	0.9984804	GAG	nonsynonymous	GGGCT	17	GGGCTGGGCTGAGGCTG	NA
PW1766T2	chr13	56523530	PW1766tail	autochthonous	sgMsh2 aCD4/8	56523530	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	228	7	3	0.428571429	exonic	Fbxl21	nonsynonymous SNV	"Fbxl21:NM_001346732:exon2:c.G4T:p.G2C,Fbxl21:NM_001359807:exon2:c.G4T:p.G2C"	13qB1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.873652783	1	5.40E-09	GGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	60783370	PW1766tail	autochthonous	sgMsh2 aCD4/8	60783370	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	185	0	0	NA	exonic	BC051665	nonsynonymous SNV	BC051665:NM_199148:exon6:c.G733A:p.V245I	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.932418665	1	2.07E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	61163210	PW1766tail	autochthonous	sgMsh2 aCD4/8	61163210	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	141	0	0	NA	exonic	Ctsr	nonsynonymous SNV	Ctsr:NM_020284:exon2:c.A21G:p.I7M	13qB2	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.940254116	1	0.9999999	CTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	65296640	PW1766tail	autochthonous	sgMsh2 aCD4/8	65296640	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	233	7	0	0	exonic	Zfp369	synonymous SNV	Zfp369:NM_178364:exon8:c.T1596C:p.S532S	13qB3	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.250734431	3	0.9999593	GTA	synonymous	NA	NA	NA	NA
PW1766T2	chr13	70602365	PW1766tail	autochthonous	sgMsh2 aCD4/8	70602365	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	219	46	7	0.152173913	exonic	Ice1	synonymous SNV	Ice1:NM_144837:exon13:c.A5601G:p.V1867V	13qC1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.301664862	3	0.9430857	TTA	synonymous	NA	NA	NA	NA
PW1766T2	chr13	74672795	PW1766tail	autochthonous	sgMsh2 aCD4/8	74672795	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	143	21	1	0.047619048	exonic	Erap1	synonymous SNV	Erap1:NM_030711:exon14:c.A1962G:p.K654K	13qC1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.744367842	1	0.9823674	AAA	synonymous	A	5	AAAAA	NA
PW1766T2	chr13	81528456	PW1766tail	autochthonous	sgMsh2 aCD4/8	81528456	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	192	0	0	NA	exonic	Adgrv1	nonsynonymous SNV	Adgrv1:NM_054053:exon28:c.T6255A:p.N2085K	13qC3	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.227228078	3	0.9999848	GAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	95604048	PW1766tail	autochthonous	sgMsh2 aCD4/8	95604048	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	144	522	130	0.249042146	exonic	F2r	synonymous SNV	F2r:NM_010169:exon2:c.C978T:p.I326I	13qD1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	1	1	2.10E-09	AGA	synonymous	NA	NA	NA	NA
PW1766T2	chr13	100780876	PW1766tail	autochthonous	sgMsh2 aCD4/8	100780876	T	C	SNV	Mutect2;MuSe;Vardict	3	0.069	225	14	1	0.071428571	exonic	Ccnb1	nonsynonymous SNV	Ccnb1:NM_172301:exon7:c.A974G:p.E325G	13qD1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.270323058	3	0.9991912	CTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr13	103759221	PW1766tail	autochthonous	sgMsh2 aCD4/8	103759221	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	81	128	5	0.0390625	exonic	Srek1	synonymous SNV	"Srek1:NM_172592:exon4:c.A495G:p.V165V,Srek1:NM_001361085:exon6:c.A843G:p.V281V"	13qD1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.270323058	3	0.9390236	TTA	synonymous	NA	NA	NA	NA
PW1766T2	chr13	105053063	PW1766tail	autochthonous	sgMsh2 aCD4/8	105053063	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	134	0	0	NA	exonic	Rgs7bp	nonsynonymous SNV	Rgs7bp:NM_029879:exon2:c.A227G:p.D76G	13qD1	chr13-3556909-119495179	3	2	1	0.722	2.8285978	NA	1	0.246816706	3	0.9980596	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	7905858	PW1766tail	autochthonous	sgMsh2 aCD4/8	7905858	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	119	74	14	0.189189189	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon21:c.A3607G:p.T1203A,Flnb:NM_134080:exon21:c.A3607G:p.T1203A"	14qA1	chr14-3072210-34147644	2	1	1	0.722	2.8285978	NA	1	0.462291607	2	0.9999385	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	13563066	PW1766tail	autochthonous	sgMsh2 aCD4/8	13563066	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	163	140	32	0.228571429	exonic	Synpr	nonsynonymous SNV	"Synpr:NM_001163032:exon3:c.T298C:p.Y100H,Synpr:NM_028052:exon4:c.T358C:p.Y120H"	14qA1	chr14-3072210-34147644	2	1	1	0.722	2.8285978	NA	1	0.395690274	2	0.9991427	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	16242649	PW1766tail	autochthonous	sgMsh2 aCD4/8	16242649	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	225	19	2	0.105263158	exonic	Oxsm	nonsynonymous SNV	"Oxsm:NM_001359883:exon2:c.T119C:p.L40S,Oxsm:NM_027695:exon2:c.T119C:p.L40S,Oxsm:NM_001359882:exon3:c.T119C:p.L40S"	14qA2	chr14-3072210-34147644	2	1	1	0.722	2.8285978	NA	1	0.360430745	2	0.9937964	CAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	49773820	PW1766tail	autochthonous	sgMsh2 aCD4/8	49773820	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	139	0	0	NA	exonic	Armh4	nonsynonymous SNV	"Armh4:NM_001358244:exon2:c.A429T:p.Q143H,Armh4:NM_026142:exon2:c.A429T:p.Q143H"	14qC1	chr14-34351641-52811780	2	1	1	0.722	2.8285978	NA	1	0.262487607	3	0.9942659	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	52450462	PW1766tail	autochthonous	sgMsh2 aCD4/8	52450462	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	218	0	0	NA	exonic	Olfr1509	synonymous SNV	Olfr1509:NM_020514:exon1:c.C48T:p.G16G	14qC2	chr14-34351641-52811780	2	1	1	0.722	2.8285978	NA	1	0.137120392	3	1.03E-09	GCC	synonymous	NA	NA	NA	NA
PW1766T2	chr14	54973462	PW1766tail	autochthonous	sgMsh2 aCD4/8	54973462	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	64	12	0	0	exonic	Myh7	nonsynonymous SNV	"Myh7:NM_001361607:exon36:c.A4997C:p.D1666A,Myh7:NM_080728:exon36:c.A4997C:p.D1666A"	14qC3	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	0.948089567	1	0.9996925	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	56060646	PW1766tail	autochthonous	sgMsh2 aCD4/8	56060646	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.072	130	3	0	0	exonic	Mcpt4	frameshift deletion	Mcpt4:NM_010779:exon4:c.447delG:p.R150Efs*3	14qC3	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	0.282076235	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1766T2	chr14	56942100	PW1766tail	autochthonous	sgMsh2 aCD4/8	56942100	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	176	116	12	0.103448276	exonic	Zmym2	nonsynonymous SNV	"Zmym2:NM_001360643:exon15:c.C2593T:p.H865Y,Zmym2:NM_029498:exon15:c.C2593T:p.H865Y"	14qC3	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	0.24289898	3	0.9998027	TCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	78933800	PW1766tail	autochthonous	sgMsh2 aCD4/8	78933800	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	152	17	0	0	exonic	Vwa8	nonsynonymous SNV	"Vwa8:NM_027906:exon6:c.A783C:p.Q261H,Vwa8:NM_173758:exon6:c.A783C:p.Q261H"	14qD3	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	0.454456156	2	0.9999933	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr14	120021945	PW1766tail	autochthonous	sgMsh2 aCD4/8	120021945	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	150	0	0	NA	exonic	Oxgr1	synonymous SNV	Oxgr1:NM_001001490:exon4:c.T849G:p.A283A	14qE4	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	1	1	1.48E-09	AAG	synonymous	NA	NA	NA	NA
PW1766T2	chr14	121973618	PW1766tail	autochthonous	sgMsh2 aCD4/8	121973618	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	209	119	3	0.025210084	exonic	Ubac2	synonymous SNV	Ubac2:NM_026861:exon5:c.C399A:p.P133P	14qE5	chr14-53336808-124132215	2	1	1	0.722	2.8285978	NA	1	0.133202666	3	1.04E-09	CCG	synonymous	NA	NA	NA	NA
PW1766T2	chr15	8351045	PW1766tail	autochthonous	sgMsh2 aCD4/8	8351045	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	184	126	6	0.047619048	exonic	Nipbl	synonymous SNV	"Nipbl:NM_027707:exon10:c.G2262T:p.R754R,Nipbl:NM_201232:exon10:c.G2262T:p.R754R"	15qA1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.172379921	3	0.9999999	GCC	synonymous	GGCC	8	GGCCGGCC	NA
PW1766T2	chr15	8365873	PW1766tail	autochthonous	sgMsh2 aCD4/8	8365873	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	110	101	2	0.01980198	exonic	Nipbl	nonsynonymous SNV	"Nipbl:NM_027707:exon6:c.C529T:p.P177S,Nipbl:NM_201232:exon6:c.C529T:p.P177S"	15qA1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.203721725	3	0.9996727	GGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	16778197	PW1766tail	autochthonous	sgMsh2 aCD4/8	16778197	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	173	2	0	0	exonic	Cdh9	nonsynonymous SNV	Cdh9:NM_009869:exon2:c.C97A:p.L33M	15qA2	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.846228705	1	0.9999968	CCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	25801266	PW1766tail	autochthonous	sgMsh2 aCD4/8	25801266	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.223	119	51	16	0.31372549	exonic	Myo10	nonsynonymous SNV	"Myo10:NM_001353142:exon13:c.A2302C:p.I768L,Myo10:NM_001353141:exon15:c.A2614C:p.I872L,Myo10:NM_019472:exon33:c.A4540C:p.I1514L"	15qB1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.873652783	1	0.9999696	GAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	44532936	PW1766tail	autochthonous	sgMsh2 aCD4/8	44532936	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	239	0	0	NA	exonic	Pkhd1l1	synonymous SNV	Pkhd1l1:NM_138674:exon39:c.G5853A:p.E1951E	15qB3.2	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.333006666	2	0.8124963	AGA	synonymous	NA	NA	NA	NA
PW1766T2	chr15	55407784	PW1766tail	autochthonous	sgMsh2 aCD4/8	55407784	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	162	0	0	NA	exonic	Col14a1	synonymous SNV	"Col14a1:NM_001368422:exon16:c.T1932C:p.T644T,Col14a1:NM_181277:exon16:c.T1932C:p.T644T"	15qD1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.160626745	3	0.9999999	CTT	synonymous	NA	NA	NA	NA
PW1766T2	chr15	55569110	PW1766tail	autochthonous	sgMsh2 aCD4/8	55569110	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	141	19	7	0.368421053	exonic	Mtbp	nonsynonymous SNV	"Mtbp:NM_001168250:exon8:c.C812T:p.A271V,Mtbp:NM_134092:exon8:c.C812T:p.A271V"	15qD1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.869735058	1	0.9999935	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	55588714	PW1766tail	autochthonous	sgMsh2 aCD4/8	55588714	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	215	38	3	0.078947368	exonic	Mtbp	synonymous SNV	"Mtbp:NM_001168250:exon13:c.A1380G:p.R460R,Mtbp:NM_134092:exon13:c.A1380G:p.R460R"	15qD1	chr15-3327923-60016847	3	2	1	0.722	2.8285978	NA	1	0.137120392	3	1.04E-09	GAG	synonymous	AG	9	AGAGAGAGA	NA
PW1766T2	chr15	65965421	PW1766tail	autochthonous	sgMsh2 aCD4/8	65965421	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	127	0	0	NA	exonic	Hhla1	frameshift deletion	Hhla1:NM_001145096:exon6:c.333delA:p.D112Ifs*47	15qD1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.975513646	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW1766T2	chr15	75269861	PW1766tail	autochthonous	sgMsh2 aCD4/8	75269861	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	150	0	0	NA	exonic	Ly6f	nonsynonymous SNV	Ly6f:NM_008530:exon3:c.C152T:p.A51V	15qD3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.889323685	1	0.9999991	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	76283964	PW1766tail	autochthonous	sgMsh2 aCD4/8	76283964	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	78	0	0	NA	exonic	Spatc1	nonsynonymous SNV	Spatc1:NM_028852:exon2:c.C622T:p.P208S	15qD3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.795298273	1	0.9869182	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	76537419	PW1766tail	autochthonous	sgMsh2 aCD4/8	76537419	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	82	86	14	0.162790698	exonic	Fbxl6	nonsynonymous SNV	Fbxl6:NM_013909:exon4:c.T617C:p.L206P	15qD3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.92850094	1	0.9999195	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	78540485	PW1766tail	autochthonous	sgMsh2 aCD4/8	78540485	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	140	0	0	NA	exonic	Sstr3	nonsynonymous SNV	"Sstr3:NM_001356961:exon2:c.T61C:p.S21P,Sstr3:NM_009218:exon3:c.T61C:p.S21P"	15qE1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.77179192	1	0.9966016	GAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	79079025	PW1766tail	autochthonous	sgMsh2 aCD4/8	79079025	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	219	508	143	0.281496063	exonic	Eif3l	nonsynonymous SNV	Eif3l:NM_145139:exon5:c.T406C:p.Y136H	15qE1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.904994587	1	1.41E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	79252504	PW1766tail	autochthonous	sgMsh2 aCD4/8	79252504	A	T	SNV	Mutect2;MuSe;Vardict	3	0.35	24	1	0	0	exonic	Slc16a8	nonsynonymous SNV	Slc16a8:NM_020516:exon5:c.T497A:p.L166Q	15qE1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	1	1	0.9830879	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	81648890	PW1766tail	autochthonous	sgMsh2 aCD4/8	81648890	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	126	36	14	0.388888889	exonic	Ep300	nonsynonymous SNV	Ep300:NM_177821:exon31:c.A5147G:p.N1716S	15qE1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	1	1	1.42E-08	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	81960748	PW1766tail	autochthonous	sgMsh2 aCD4/8	81960748	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	67	16	2	0.125	exonic	Pmm1	nonsynonymous SNV	Pmm1:NM_001282041:exon1:c.T173C:p.L58S	15qE1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	1	1	0.9999545	CAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	84771864	PW1766tail	autochthonous	sgMsh2 aCD4/8	84771864	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.235	106	19	1	0.052631579	exonic	Arhgap8	frameshift deletion	"Arhgap8:NM_001164628:exon12:c.1065delG:p.V357Wfs*3,Arhgap8:NM_028455:exon12:c.1065delG:p.V357Wfs*3,Arhgap8:NM_001164627:exon13:c.1065delG:p.V357Wfs*3,Arhgap8:NM_001205334:exon13:c.1065delG:p.V357Wfs*3"	15qE2	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.920665489	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1766T2	chr15	89165816	PW1766tail	autochthonous	sgMsh2 aCD4/8	89165816	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	105	169	27	0.159763314	exonic	Plxnb2	nonsynonymous SNV	"Plxnb2:NM_001284506:exon7:c.T1501G:p.S501A,Plxnb2:NM_001159521:exon8:c.T1501G:p.S501A,Plxnb2:NM_138749:exon8:c.T1501G:p.S501A"	15qE3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.814886901	1	0.9984787	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	89165827	PW1766tail	autochthonous	sgMsh2 aCD4/8	89165827	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	107	181	22	0.121546961	exonic	Plxnb2	nonsynonymous SNV	"Plxnb2:NM_001284506:exon7:c.G1490A:p.C497Y,Plxnb2:NM_001159521:exon8:c.G1490A:p.C497Y,Plxnb2:NM_138749:exon8:c.G1490A:p.C497Y"	15qE3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.865817332	1	0.9998827	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	90489024	PW1766tail	autochthonous	sgMsh2 aCD4/8	90489024	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	164	48	12	0.25	exonic	Cpne8	nonsynonymous SNV	"Cpne8:NM_001357979:exon19:c.A1289G:p.Y430C,Cpne8:NM_025815:exon20:c.A1697G:p.Y566C"	15qE3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.560234744	2	0.9998886	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	97761565	PW1766tail	autochthonous	sgMsh2 aCD4/8	97761565	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	154	7	6	0.857142857	exonic	Rapgef3	nonsynonymous SNV	"Rapgef3:NM_001177810:exon4:c.T290C:p.V97A,Rapgef3:NM_001177811:exon4:c.T290C:p.V97A,Rapgef3:NM_001357630:exon4:c.T290C:p.V97A,Rapgef3:NM_144850:exon4:c.T290C:p.V97A"	15qF1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	1	1	1.28E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	97795765	PW1766tail	autochthonous	sgMsh2 aCD4/8	97795765	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	108	52	3	0.057692308	exonic	Hdac7	nonsynonymous SNV	"Hdac7:NM_001204280:exon20:c.G2407A:p.A803T,Hdac7:NM_001204281:exon21:c.G2356A:p.A786T,Hdac7:NM_001204278:exon22:c.G2551A:p.A851T,Hdac7:NM_001204279:exon22:c.G2479A:p.A827T,Hdac7:NM_019572:exon22:c.G2617A:p.A873T,Hdac7:NM_001204275:exon23:c.G2662A:p.A888T,Hdac7:NM_001204277:exon23:c.G2635A:p.A879T,Hdac7:NM_001378971:exon23:c.G2728A:p.A910T,Hdac7:NM_001204276:exon24:c.G2641A:p.A881T"	15qF1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.24289898	3	0.995218	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	98852030	PW1766tail	autochthonous	sgMsh2 aCD4/8	98852030	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	96	4	0	0	exonic	Kmt2d	frameshift deletion	Kmt2d:NM_001033276:exon32:c.7781delG:p.G2594Afs*15	15qF1	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.881488234	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1766T2	chr15	101794060	PW1766tail	autochthonous	sgMsh2 aCD4/8	101794060	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	107	0	0	NA	exonic	Krt73	nonsynonymous SNV	Krt73:NM_212485:exon9:c.T1367C:p.V456A	15qF2	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.979431371	1	0.9999995	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	102298668	PW1766tail	autochthonous	sgMsh2 aCD4/8	102298668	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	99	8	1	0.125	exonic	Espl1	nonsynonymous SNV	"Espl1:NM_001014976:exon3:c.A566G:p.H189R,Espl1:NM_001356312:exon3:c.A566G:p.H189R"	15qF3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.889323685	1	0.9999235	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr15	102340413	PW1766tail	autochthonous	sgMsh2 aCD4/8	102340413	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	102	33	5	0.151515152	exonic	Aaas	nonsynonymous SNV	Aaas:NM_153416:exon8:c.G728A:p.G243E	15qF3	chr15-63776367-103351732	3	2	1	0.722	2.8285978	NA	1	0.991184548	1	0.9999995	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	9707679	PW1766tail	autochthonous	sgMsh2 aCD4/8	9707679	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	196	0	0	NA	exonic	Grin2a	synonymous SNV	Grin2a:NM_008170:exon5:c.C1047T:p.S349S	16qA1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.156709019	3	3.98E-09	AGG	synonymous	NA	NA	NA	NA
PW1766T2	chr16	10417678	PW1766tail	autochthonous	sgMsh2 aCD4/8	10417678	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	141	130	29	0.223076923	exonic	Nubp1	synonymous SNV	Nubp1:NM_011955:exon4:c.C276T:p.I92I	16qA1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.952007293	1	3.62E-08	TCG	synonymous	NA	NA	NA	NA
PW1766T2	chr16	11075087	PW1766tail	autochthonous	sgMsh2 aCD4/8	11075087	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	169	70	17	0.242857143	exonic	Txndc11	synonymous SNV	"Txndc11:NM_134105:exon5:c.C906T:p.D302D,Txndc11:NM_029582:exon12:c.C2778T:p.D926D"	16qA1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.948089567	1	2.82E-09	TGT	synonymous	NA	NA	NA	NA
PW1766T2	chr16	17317001	PW1766tail	autochthonous	sgMsh2 aCD4/8	17317001	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	158	20	0	0	exonic	Pi4ka	frameshift deletion	"Pi4ka:NM_001001983:exon27:c.2940delC:p.Y981Ifs*15,Pi4ka:NM_001373955:exon27:c.3123delC:p.Y1042Ifs*15"	16qA3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.548481568	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1766T2	chr16	19769440	PW1766tail	autochthonous	sgMsh2 aCD4/8	19769440	G	T	SNV	Mutect2;Vardict	2	0.036	238	5	0	0	exonic	B3gnt5	nonsynonymous SNV	"B3gnt5:NM_054052:exon4:c.G408T:p.K136N,B3gnt5:NM_001159408:exon5:c.G408T:p.K136N,B3gnt5:NM_001159407:exon6:c.G408T:p.K136N"	16qA3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.141038117	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	20392537	PW1766tail	autochthonous	sgMsh2 aCD4/8	20392537	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	115	75	6	0.08	exonic	Abcc5	nonsynonymous SNV	Abcc5:NM_013790:exon11:c.C1675T:p.P559S	16qA3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.250734431	3	0.9940872	GGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	32144799	PW1766tail	autochthonous	sgMsh2 aCD4/8	32144799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	130	8	0	0	exonic	Nrros	synonymous SNV	"Nrros:NM_001347182:exon2:c.C243T:p.G81G,Nrros:NM_001347181:exon3:c.C315T:p.G105G,Nrros:NM_146069:exon4:c.C315T:p.G105G"	16qB2	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.720861489	1	0.9126541	GGC	synonymous	NA	NA	NA	NA
PW1766T2	chr16	36800594	PW1766tail	autochthonous	sgMsh2 aCD4/8	36800594	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	185	10	0	0	exonic	Eaf2	synonymous SNV	"Eaf2:NM_001113405:exon3:c.T345C:p.S115S,Eaf2:NM_001358102:exon3:c.T345C:p.S115S,Eaf2:NM_001113401:exon5:c.T735C:p.S245S,Eaf2:NM_134111:exon5:c.T345C:p.S115S"	16qB3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.799215999	1	0.9999289	TAC	synonymous	NA	NA	NA	NA
PW1766T2	chr16	36900515	PW1766tail	autochthonous	sgMsh2 aCD4/8	36900515	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.292	216	23	2	0.086956522	exonic	Golgb1	frameshift deletion	Golgb1:NM_030035:exon10:c.1355delA:p.N454Mfs*19	16qB3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr16	38780147	PW1766tail	autochthonous	sgMsh2 aCD4/8	38780147	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	92	7	0	0	exonic	Upk1b	nonsynonymous SNV	Upk1b:NM_178924:exon6:c.A470C:p.D157A	16qB4	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.470127058	2	0.9994595	GTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	39022480	PW1766tail	autochthonous	sgMsh2 aCD4/8	39022480	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	62	21	6	0.285714286	exonic	Igsf11	nonsynonymous SNV	Igsf11:NM_170599:exon5:c.T695C:p.V232A	16qB4	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.948089567	1	0.9996133	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	44437299	PW1766tail	autochthonous	sgMsh2 aCD4/8	44437301	AAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.122	54	1	0	0	exonic	Cfap44	nonframeshift deletion	Cfap44:NM_001033247:exon23:c.3196_3198del:p.K1067del	16qB4	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.477962509	NA	NA	CAA	inframe	NA	NA	NA	-3
PW1766T2	chr16	49760963	PW1766tail	autochthonous	sgMsh2 aCD4/8	49760963	C	T	SNV	Mutect2;Vardict	2	0.028	206	82	3	0.036585366	exonic	Ift57	nonsynonymous SNV	Ift57:NM_028680:exon9:c.C991T:p.R331C	16qB5	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.109696314	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	49868099	PW1766tail	autochthonous	sgMsh2 aCD4/8	49868099	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	126	737	139	0.188602442	exonic	Cd47	synonymous SNV	"Cd47:NM_001368415:exon2:c.G381A:p.L127L,Cd47:NM_001368416:exon2:c.G381A:p.L127L,Cd47:NM_001368417:exon2:c.G381A:p.L127L,Cd47:NM_001368418:exon2:c.G381A:p.L127L,Cd47:NM_010581:exon2:c.G381A:p.L127L"	16qB5	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.920665489	1	0.9999988	TGA	synonymous	A	5	AAAAA	NA
PW1766T2	chr16	56035158	PW1766tail	autochthonous	sgMsh2 aCD4/8	56035158	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	212	121	46	0.380165289	exonic	Trmt10c	nonsynonymous SNV	Trmt10c:NM_029092:exon2:c.C113T:p.S38F	16qC1.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.830557803	1	0.999999	GGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	64926927	PW1766tail	autochthonous	sgMsh2 aCD4/8	64926927	T	-	Deletion	Strelka2;Vardict	2	0.2389	113	0	0	NA	exonic	Htr1f	frameshift deletion	Htr1f:NM_008310:exon3:c.1delA:p.M1Wfs*3	16qC1.3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.935944618	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
PW1766T2	chr16	72972552	PW1766tail	autochthonous	sgMsh2 aCD4/8	72972552	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	221	2	0	0	exonic	Robo1	synonymous SNV	Robo1:NM_019413:exon12:c.C1764T:p.N588N	16qC3.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.603329725	2	0.9997352	ACG	synonymous	NA	NA	NA	NA
PW1766T2	chr16	73904420	PW1766tail	autochthonous	sgMsh2 aCD4/8	73904420	C	A	SNV	Mutect2;Vardict	2	0.058	75	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_001358491:exon25:c.G3975T:p.Q1325H,Robo2:NM_001358492:exon25:c.G3975T:p.Q1325H,Robo2:NM_001358494:exon25:c.G3906T:p.Q1302H,Robo2:NM_175549:exon25:c.G4020T:p.Q1340H,Robo2:NM_001358493:exon26:c.G4101T:p.Q1367H"	16qC3.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.227228078	3	0.9889681	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	76291746	PW1766tail	autochthonous	sgMsh2 aCD4/8	76291746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	252	50	8	0.16	exonic	Nrip1	nonsynonymous SNV	"Nrip1:NM_001358238:exon4:c.A2922C:p.K974N,Nrip1:NM_173440:exon4:c.A2922C:p.K974N"	16qC3.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.415278901	2	0.9999992	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	76292293	PW1766tail	autochthonous	sgMsh2 aCD4/8	76292293	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	178	64	11	0.171875	exonic	Nrip1	nonsynonymous SNV	"Nrip1:NM_001358238:exon4:c.G2375A:p.S792N,Nrip1:NM_173440:exon4:c.G2375A:p.S792N"	16qC3.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.489715686	2	0.9999998	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr16	76294050	PW1766tail	autochthonous	sgMsh2 aCD4/8	76294050	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	170	44	4	0.090909091	exonic	Nrip1	synonymous SNV	"Nrip1:NM_001358238:exon4:c.G618A:p.V206V,Nrip1:NM_173440:exon4:c.G618A:p.V206V"	16qC3.1	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.270323058	3	0.9956981	TCA	synonymous	NA	NA	NA	NA
PW1766T2	chr16	85795890	PW1766tail	autochthonous	sgMsh2 aCD4/8	85795890	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	184	41	4	0.097560976	exonic	Adamts1	synonymous SNV	Adamts1:NM_009621:exon9:c.G2418T:p.S806S	16qC3.3	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.454456156	2	0.9999995	CCG	synonymous	NA	NA	NA	NA
PW1766T2	chr16	95982105	PW1766tail	autochthonous	sgMsh2 aCD4/8	95982105	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	110	100	21	0.21	exonic	Psmg1	synonymous SNV	Psmg1:NM_019537:exon6:c.G792A:p.V264V	16qC4	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.842310979	1	0.9997022	TCA	synonymous	ACCTT	10	ACCTTACCTT	NA
PW1766T2	chr16	96673680	PW1766tail	autochthonous	sgMsh2 aCD4/8	96673680	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	233	0	0	NA	exonic	Dscam	synonymous SNV	Dscam:NM_031174:exon20:c.C3681A:p.S1227S	16qC4	chr16-3948854-96819699	3	2	1	0.722	2.8285978	NA	1	0.223310353	3	0.9999991	GGG	synonymous	NA	NA	NA	NA
PW1766T2	chr17	15403113	PW1766tail	autochthonous	sgMsh2 aCD4/8	15403113	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	119	75	17	0.226666667	exonic	Fam120b	nonsynonymous SNV	"Fam120b:NM_001357822:exon2:c.A1352G:p.E451G,Fam120b:NM_024203:exon2:c.A1352G:p.E451G"	17qA2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.783545097	1	0.9962095	GAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	19531368	PW1766tail	autochthonous	sgMsh2 aCD4/8	19531368	G	A	SNV	Mutect2;Vardict	2	0.016	526	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon6:c.G1861A:p.A621T	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.062683608	3	1	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	19694032	PW1766tail	autochthonous	sgMsh2 aCD4/8	19694032	G	A	SNV	Mutect2;Vardict	2	0.03	493	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.G1858A:p.A620T	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.117531765	3	1	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	20268084	PW1766tail	autochthonous	sgMsh2 aCD4/8	20268084	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	390	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon6:c.C2052A:p.A684A,Vmn2r106:NM_001385160:exon6:c.C2040A:p.A680A"	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.720861489	1	0.9960835	TGG	synonymous	NA	NA	NA	NA
PW1766T2	chr17	20277470	PW1766tail	autochthonous	sgMsh2 aCD4/8	20277470	C	T	SNV	Mutect2;Vardict	2	0.033	163	0	0	NA	exonic	Vmn2r106	synonymous SNV	"Vmn2r106:NM_001104568:exon4:c.G1506A:p.E502E,Vmn2r106:NM_001385160:exon4:c.G1494A:p.E498E"	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.129284941	3	6.28E-09	TCT	synonymous	NA	NA	NA	NA
PW1766T2	chr17	20481101	PW1766tail	autochthonous	sgMsh2 aCD4/8	20481101	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	187	0	0	NA	exonic	Vmn2r108	nonsynonymous SNV	Vmn2r108:NM_001104570:exon1:c.G136A:p.A46T	17qA3.2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.501468862	2	0.9999998	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	22852260	PW1766tail	autochthonous	sgMsh2 aCD4/8	22852260	A	G	SNV	Mutect2;Vardict	2	0.023	279	4	1	0.25	exonic	Zfp945	synonymous SNV	"Zfp945:NM_001110254:exon5:c.T727C:p.L243L,Zfp945:NM_177358:exon6:c.T664C:p.L222L"	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.090107686	3	1	AAA	synonymous	NA	NA	NA	NA
PW1766T2	chr17	23816106	PW1766tail	autochthonous	sgMsh2 aCD4/8	23816106	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	91	143	35	0.244755245	exonic	Srrm2	nonsynonymous SNV	"Srrm2:NM_175229:exon10:c.A1723G:p.T575A,Srrm2:NM_001368687:exon11:c.A2011G:p.T671A"	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	1	1	0.9999983	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	24471469	PW1766tail	autochthonous	sgMsh2 aCD4/8	24471469	A	G	SNV	Mutect2;Vardict	2	0.042	102	179	1	0.005586592	exonic	Pgp	nonsynonymous SNV	Pgp:NM_025954:exon2:c.A868G:p.K290E	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.16454447	3	0.999948	GAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	25751743	PW1766tail	autochthonous	sgMsh2 aCD4/8	25751743	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	95	1680	78	0.046428571	exonic	Msln	synonymous SNV	"Msln:NM_018857:exon7:c.G537A:p.V179V,Msln:NM_001356286:exon8:c.G537A:p.V179V,Msln:NM_001374653:exon8:c.G549A:p.V183V"	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.266405333	3	0.9672175	TCA	synonymous	CTCA	10	CTCACTCACT	NA
PW1766T2	chr17	25877836	PW1766tail	autochthonous	sgMsh2 aCD4/8	25877836	G	A	SNV	Mutect2;Vardict	2	0.031	173	6	0	0	exonic	Wfikkn1	synonymous SNV	Wfikkn1:NM_001100454:exon2:c.C1513T:p.L505L	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.12144949	3	1.74E-09	AGT	synonymous	NA	NA	NA	NA
PW1766T2	chr17	26925523	PW1766tail	autochthonous	sgMsh2 aCD4/8	26925523	A	G	SNV	Mutect2;Vardict	2	0.035	151	20	0	0	exonic	Kifc5b	nonsynonymous SNV	Kifc5b:NM_053173:exon8:c.A1615G:p.S539G	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.137120392	3	4.39E-08	TAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	27073113	PW1766tail	autochthonous	sgMsh2 aCD4/8	27073113	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	189	47	12	0.255319149	exonic	Itpr3	synonymous SNV	Itpr3:NM_080553:exon2:c.T105C:p.R35R	17qA3.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.912830038	1	4.70E-09	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr17	33696145	PW1766tail	autochthonous	sgMsh2 aCD4/8	33696145	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.234	108	129	39	0.302325581	exonic	Marchf2	synonymous SNV	"Marchf2:NM_001252480:exon4:c.T474C:p.L158L,Marchf2:NM_145486:exon4:c.T474C:p.L158L"	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.916747763	1	0.9999909	AAA	synonymous	AGCC	8	AGCCAGCC	NA
PW1766T2	chr17	35027866	PW1766tail	autochthonous	sgMsh2 aCD4/8	35027866	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	137	0	0	NA	exonic	Sapcd1	synonymous SNV	Sapcd1:NM_023893:exon1:c.C45A:p.P15P	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.591576548	2	0.9961116	AGG	synonymous	NA	NA	NA	NA
PW1766T2	chr17	35069520	PW1766tail	autochthonous	sgMsh2 aCD4/8	35069520	T	C	SNV	Mutect2;Vardict	2	0.123	45	5	0	0	exonic	Ly6g6c	nonsynonymous SNV	Ly6g6c:NM_023463:exon3:c.T367C:p.W123R	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.481880235	2	0.9562584	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	35156084	PW1766tail	autochthonous	sgMsh2 aCD4/8	35156084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	108	138	17	0.123188406	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon16:c.A3589G:p.T1197A,Prrc2a:NM_020027:exon16:c.A3589G:p.T1197A"	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.360430745	2	0.09134271	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	35962055	PW1766tail	autochthonous	sgMsh2 aCD4/8	35962055	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	310	153	60	0.392156863	exonic	Abcf1	synonymous SNV	Abcf1:NM_013854:exon9:c.A699G:p.E233E	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	1	1	1	CTT	synonymous	TTCT	8	TTCTTTCT	NA
PW1766T2	chr17	37530599	PW1766tail	autochthonous	sgMsh2 aCD4/8	37530599	C	A	SNV	Mutect2;MuSe;Vardict	3	0.07	469	0	0	NA	exonic	Olfr111	synonymous SNV	Olfr111:NM_001005485:exon1:c.C621A:p.G207G	17qB1	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.274240784	3	0.9999986	GCT	synonymous	NA	NA	NA	NA
PW1766T2	chr17	40301411	PW1766tail	autochthonous	sgMsh2 aCD4/8	40301411	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.196	388	21	0	0	exonic	Crisp1	frameshift deletion	Crisp1:NM_009638:exon6:c.430delT:p.W144Gfs*15	17qB2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.767874195	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1766T2	chr17	46222740	PW1766tail	autochthonous	sgMsh2 aCD4/8	46222740	T	-	Deletion	Strelka2;Vardict	2	0.2028	212	30	0	0	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon14:c.1521delT:p.L510Wfs*3	17qC	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.794514728	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW1766T2	chr17	46959479	PW1766tail	autochthonous	sgMsh2 aCD4/8	46959479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	95	76	20	0.263157895	exonic	Ubr2	nonsynonymous SNV	"Ubr2:NM_001177374:exon26:c.A2857G:p.T953A,Ubr2:NM_146078:exon26:c.A2857G:p.T953A"	17qC	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.932418665	1	0.9999828	GTG	nonsynonymous	GTGAAG	14	GTGAAGGTGAAGGT	NA
PW1766T2	chr17	49070746	PW1766tail	autochthonous	sgMsh2 aCD4/8	49070746	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	58	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon2:c.T854C:p.V285A	17qC	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.340842117	2	0.6049127	GTG	nonsynonymous	TG	8	TGTGTGTG	NA
PW1766T2	chr17	56399435	PW1766tail	autochthonous	sgMsh2 aCD4/8	56399435	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.186	95	44	10	0.227272727	exonic	Kdm4b	nonsynonymous SNV	"Kdm4b:NM_001357909:exon18:c.T2485C:p.C829R,Kdm4b:NM_172132:exon19:c.T2569C:p.C857R"	17qD	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.72869694	1	0.09517154	GTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	56401306	PW1766tail	autochthonous	sgMsh2 aCD4/8	56401306	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.114	59	49	13	0.265306122	exonic	Kdm4b	synonymous SNV	"Kdm4b:NM_001357909:exon21:c.T2985C:p.R995R,Kdm4b:NM_172132:exon22:c.T3069C:p.R1023R"	17qD	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.446620705	2	0.9822243	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr17	69387620	PW1766tail	autochthonous	sgMsh2 aCD4/8	69387620	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	208	37	4	0.108108108	exonic	Zbtb14	synonymous SNV	"Zbtb14:NM_001356282:exon3:c.C312T:p.D104D,Zbtb14:NM_001356283:exon3:c.C312T:p.D104D,Zbtb14:NM_009547:exon3:c.C312T:p.D104D"	17qE1.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.387854823	2	0.9996977	ACG	synonymous	NA	NA	NA	NA
PW1766T2	chr17	69388522	PW1766tail	autochthonous	sgMsh2 aCD4/8	69388522	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	240	49	11	0.224489796	exonic	Zbtb14	nonsynonymous SNV	"Zbtb14:NM_001356282:exon3:c.A1214G:p.K405R,Zbtb14:NM_001356283:exon3:c.A1214G:p.K405R,Zbtb14:NM_009547:exon3:c.A1214G:p.K405R"	17qE1.3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.395690274	2	0.9999731	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	74427003	PW1766tail	autochthonous	sgMsh2 aCD4/8	74427003	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	152	15	0	0	exonic	Nlrc4	nonsynonymous SNV	Nlrc4:NM_001033367:exon9:c.T2914C:p.F972L	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.999992	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	74493966	PW1766tail	autochthonous	sgMsh2 aCD4/8	74493966	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	192	403	57	0.141439206	exonic	Yipf4	nonsynonymous SNV	Yipf4:NM_026417:exon3:c.A278C:p.K93T	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.732614666	1	0.9840805	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	74494035	PW1766tail	autochthonous	sgMsh2 aCD4/8	74494035	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	213	422	72	0.170616114	exonic	Yipf4	nonsynonymous SNV	Yipf4:NM_026417:exon3:c.A347C:p.D116A	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.662095607	2	0.09340398	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	74739601	PW1766tail	autochthonous	sgMsh2 aCD4/8	74739601	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	221	14	2	0.142857143	exonic	Ttc27	nonsynonymous SNV	Ttc27:NM_152817:exon6:c.T656C:p.M219T	17qE2	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.932418665	1	1.02E-09	ATG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr17	78947039	PW1766tail	autochthonous	sgMsh2 aCD4/8	78947039	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	108	41	5	0.12195122	exonic	Ndufaf7	frameshift deletion	Ndufaf7:NM_028611:exon10:c.1260delA:p.T422Pfs*5	17qE3	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	1	0.611165176	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr17	87718638	PW1766tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.73	118	30	1	0.033333333	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3505882-94834206	3	2	1	0.722	2.8285978	NA	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1766T2	chr18	13845636	PW1766tail	autochthonous	sgMsh2 aCD4/8	13845636	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	220	5	0	0	exonic	Zfp521	synonymous SNV	"Zfp521:NM_001360804:exon4:c.T1719C:p.S573S,Zfp521:NM_145492:exon4:c.T1719C:p.S573S"	18qA1	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.219392627	3	0.9999989	CAC	synonymous	NA	NA	NA	NA
PW1766T2	chr18	20601623	PW1766tail	autochthonous	sgMsh2 aCD4/8	20601623	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	119	45	0	0	exonic	Dsg2	nonsynonymous SNV	Dsg2:NM_007883:exon15:c.A2657G:p.Y886C	18qA2	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.48579796	2	0.9999594	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	24903903	PW1766tail	autochthonous	sgMsh2 aCD4/8	24903903	-	T	Insertion	Mutect2;Strelka2	2	0.19	112	13	0	0	exonic	Fhod3	frameshift insertion	"Fhod3:NM_001289654:exon5:c.417dupT:p.L140Ffs*3,Fhod3:NM_001289655:exon5:c.417dupT:p.L140Ffs*3,Fhod3:NM_175276:exon5:c.417dupT:p.L140Ffs*3"	18qA2	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.744367842	NA	NA	GAT	frameshift	NA	NA	NA	1
PW1766T2	chr18	34445555	PW1766tail	autochthonous	sgMsh2 aCD4/8	34445555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	335	100	19	0.19	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon18:c.G2143A:p.A715T	18qB1	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.920665489	1	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	35581186	PW1766tail	autochthonous	sgMsh2 aCD4/8	35581186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	221	585	169	0.288888889	exonic	Matr3	nonsynonymous SNV	Matr3:NM_010771:exon7:c.T1199C:p.V400A	18qB2	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.830557803	1	0.9999994	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	37302522	PW1766tail	autochthonous	sgMsh2 aCD4/8	37302522	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	350	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.T1540C:p.F514L	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.094025412	3	1	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	37474446	PW1766tail	autochthonous	sgMsh2 aCD4/8	37474446	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	254	0	0	NA	exonic	Pcdhb15	stopgain	Pcdhb15:NM_053140:exon1:c.C730T:p.Q244X	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.779627371	1	0.9999749	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	37891030	PW1766tail	autochthonous	sgMsh2 aCD4/8	37891030	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	100	81	15	0.185185185	exonic	Diaph1	nonsynonymous SNV	"Diaph1:NM_007858:exon15:c.T1754A:p.I585N,Diaph1:NM_001305980:exon16:c.T1781A:p.I594N,Diaph1:NM_001305981:exon17:c.T1649A:p.I550N"	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.9996573	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	37952527	PW1766tail	autochthonous	sgMsh2 aCD4/8	37952527	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	73	212	4	0.018867925	exonic	Hdac3	frameshift deletion	Hdac3:NM_010411:exon3:c.225delC:p.T76Pfs*42	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.709108313	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW1766T2	chr18	37984387	PW1766tail	autochthonous	sgMsh2 aCD4/8	37984387	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	80	63	6	0.095238095	exonic	Arap3	synonymous SNV	"Arap3:NM_001205336:exon19:c.T2401C:p.L801L,Arap3:NM_139206:exon19:c.T2635C:p.L879L"	18qB3	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.356513019	2	9.09E-06	AAA	synonymous	NA	NA	NA	NA
PW1766T2	chr18	61007483	PW1766tail	autochthonous	sgMsh2 aCD4/8	61007483	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	79	0	0	NA	exonic	Slc6a7	nonsynonymous SNV	Slc6a7:NM_201353:exon4:c.A476G:p.N159S	18qE1	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.215474902	3	0.9949328	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	61989694	PW1766tail	autochthonous	sgMsh2 aCD4/8	61989694	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	118	0	0	NA	exonic	Sh3tc2	nonsynonymous SNV	Sh3tc2:NM_172628:exon11:c.G1525C:p.V509L	18qE1	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.172379921	3	0.9999799	AGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr18	86498977	PW1766tail	autochthonous	sgMsh2 aCD4/8	86498977	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	164	0	0	NA	exonic	Neto1	nonsynonymous SNV	"Neto1:NM_001360910:exon7:c.G830A:p.R277K,Neto1:NM_144946:exon9:c.G1418A:p.R473K"	18qE4	chr18-3426642-89104078	3	2	1	0.722	2.8285978	NA	1	0.258569882	3	0.9983758	AGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	5082642	PW1766tail	autochthonous	sgMsh2 aCD4/8	5082642	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	163	32	1	0.03125	exonic	Tmem151a	nonsynonymous SNV	Tmem151a:NM_001001885:exon2:c.G535T:p.V179F	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.188050823	3	0.9999983	ACC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	5152732	PW1766tail	autochthonous	sgMsh2 aCD4/8	5152732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	140	86	22	0.255813953	exonic	Pacs1	nonsynonymous SNV	"Pacs1:NM_153129:exon9:c.A1121G:p.Y374C,Pacs1:NM_001362451:exon10:c.A902G:p.Y301C"	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.673848783	2	0.6213947	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	6171818	PW1766tail	autochthonous	sgMsh2 aCD4/8	6171818	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	38	0	0	NA	exonic	Batf2	synonymous SNV	"Batf2:NM_001356604:exon3:c.T654C:p.S218S,Batf2:NM_001379529:exon3:c.T648C:p.S216S,Batf2:NM_028967:exon3:c.T657C:p.S219S"	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	1	1	0.9975149	GTG	synonymous	NA	NA	NA	NA
PW1766T2	chr19	7271550	PW1766tail	autochthonous	sgMsh2 aCD4/8	7271550	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	34	89	31	0.348314607	exonic	Rcor2	nonsynonymous SNV	"Rcor2:NM_001320554:exon8:c.G887A:p.R296H,Rcor2:NM_054048:exon9:c.G887A:p.R296H"	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.80705145	1	0.9232811	CGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	11550302	PW1766tail	autochthonous	sgMsh2 aCD4/8	11550302	T	G	SNV	Mutect2;Vardict	2	0.06	67	0	0	NA	exonic	Ms4a4d	nonsynonymous SNV	Ms4a4d:NM_025658:exon3:c.T172G:p.L58V	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.235063529	3	0.9765487	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	12626875	PW1766tail	autochthonous	sgMsh2 aCD4/8	12626875	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	165	2	1	0.5	exonic	Gm4952	nonsynonymous SNV	"Gm4952:NM_001013762:exon6:c.T650C:p.V217A,Gm4952:NM_001167907:exon6:c.T650C:p.V217A"	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.278158509	3	0.9891689	GTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	13529946	PW1766tail	autochthonous	sgMsh2 aCD4/8	13529946	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	734	0	0	NA	exonic	Olfr1480	nonsynonymous SNV	Olfr1480:NM_207575:exon1:c.T272C:p.I91T	19qA	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	1	1	1	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	17654891	PW1766tail	autochthonous	sgMsh2 aCD4/8	17654891	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	126	2	0	0	exonic	Pcsk5	nonsynonymous SNV	"Pcsk5:NM_001163144:exon8:c.G910T:p.G304C,Pcsk5:NM_001190483:exon8:c.G910T:p.G304C"	19qB	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.191968549	3	0.9999565	CCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	34931674	PW1766tail	autochthonous	sgMsh2 aCD4/8	34931674	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	202	15	5	0.333333333	exonic	Kif20b	nonsynonymous SNV	"Kif20b:NM_001362434:exon6:c.T610G:p.L204V,Kif20b:NM_183046:exon6:c.T610G:p.L204V"	19qC1	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	1	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	44818516	PW1766tail	autochthonous	sgMsh2 aCD4/8	44818516	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	145	0	0	NA	exonic	Pax2	nonsynonymous SNV	"Pax2:NM_001368747:exon7:c.A883G:p.N295D,Pax2:NM_001368748:exon7:c.A880G:p.N294D,Pax2:NM_001368749:exon7:c.A880G:p.N294D,Pax2:NM_001368750:exon7:c.A880G:p.N294D,Pax2:NM_001368751:exon7:c.A883G:p.N295D,Pax2:NM_011037:exon7:c.A883G:p.N295D,Pax2:NM_001368744:exon8:c.A976G:p.N326D,Pax2:NM_001368745:exon8:c.A973G:p.N325D,Pax2:NM_001368746:exon8:c.A949G:p.N317D,Pax2:NM_001368743:exon9:c.A952G:p.N318D"	19qC3	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.211557176	3	0.999945	CAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	46064204	PW1766tail	autochthonous	sgMsh2 aCD4/8	46064204	G	A	SNV	Mutect2;Vardict	2	0.061	104	57	6	0.105263158	exonic	Pprc1	synonymous SNV	"Pprc1:NM_001081214:exon5:c.G2169A:p.R723R,Pprc1:NM_001346801:exon5:c.G2172A:p.R724R"	19qC3	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.238981255	3	0.9954831	GGC	synonymous	NA	NA	NA	NA
PW1766T2	chr19	46320574	PW1766tail	autochthonous	sgMsh2 aCD4/8	46320574	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	145	1	0	0	exonic	Psd	stopgain	"Psd:NM_001347454:exon8:c.T1785G:p.Y595X,Psd:NM_028627:exon8:c.T1782G:p.Y594X"	19qC3	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.826640077	1	0.9999205	GAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	46542462	PW1766tail	autochthonous	sgMsh2 aCD4/8	46542462	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.049	117	233	5	0.021459227	exonic	Arl3	nonsynonymous SNV	"Arl3:NM_001355233:exon5:c.C391T:p.L131F,Arl3:NM_019718:exon5:c.C391T:p.L131F"	19qC3	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.191968549	3	0.9999126	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	53618088	PW1766tail	autochthonous	sgMsh2 aCD4/8	53618088	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	301	163	46	0.282208589	exonic	Smc3	nonsynonymous SNV	Smc3:NM_007790:exon5:c.T218G:p.V73G	19qD2	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.767874195	1	0.99998	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	57061355	PW1766tail	autochthonous	sgMsh2 aCD4/8	57061355	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	143	17	1	0.058823529	exonic	Ablim1	nonsynonymous SNV	"Ablim1:NM_001347459:exon7:c.A391C:p.I131L,Ablim1:NM_001103178:exon9:c.A523C:p.I175L,Ablim1:NM_001103177:exon12:c.A1111C:p.I371L,Ablim1:NM_001290813:exon12:c.A1339C:p.I447L,Ablim1:NM_001290815:exon12:c.A1111C:p.I371L,Ablim1:NM_001290816:exon12:c.A1111C:p.I371L,Ablim1:NM_001362445:exon12:c.A1108C:p.I370L,Ablim1:NM_001362446:exon12:c.A883C:p.I295L,Ablim1:NM_178688:exon14:c.A1471C:p.I491L"	19qD2	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	1	1	2.27E-09	ATC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr19	57731629	PW1766tail	autochthonous	sgMsh2 aCD4/8	57731629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	214	21	2	0.095238095	exonic	Atrnl1	nonsynonymous SNV	Atrnl1:NM_181415:exon20:c.G3250A:p.G1084S	19qD2	chr19-3600535-61225035	3	2	1	0.722	2.8285978	NA	1	0.955925018	1	1.00E-09	GGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	10126300	PW1766tail	autochthonous	sgMsh2 aCD4/8	10126300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	192	18	0	0	exonic	Itih2	synonymous SNV	Itih2:NM_010582:exon4:c.T225C:p.T75T	2qA1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.238981255	3	0.9999408	GAG	synonymous	NA	NA	NA	NA
PW1766T2	chr2	13533387	PW1766tail	autochthonous	sgMsh2 aCD4/8	13533387	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	166	6	2	0.333333333	exonic	Trdmt1	synonymous SNV	Trdmt1:NM_010067:exon2:c.T171A:p.I57I	2qA1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.826640077	1	0.9999774	CAA	synonymous	NA	NA	NA	NA
PW1766T2	chr2	17450236	PW1766tail	autochthonous	sgMsh2 aCD4/8	17450236	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	207	4	1	0.25	exonic	Nebl	nonsynonymous SNV	Nebl:NM_001362722:exon5:c.T333A:p.S111R	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.897159136	1	3.70E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	25569763	PW1766tail	autochthonous	sgMsh2 aCD4/8	25569763	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	106	2	0	0	exonic	Mamdc4	nonsynonymous SNV	Mamdc4:NM_001081199:exon4:c.C400T:p.R134C	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.497551137	2	0.9998011	CGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	25578586	PW1766tail	autochthonous	sgMsh2 aCD4/8	25578586	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	90	2	0	0	exonic	Ajm1	synonymous SNV	Ajm1:NM_001005424:exon1:c.C1312T:p.L438L	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.180215372	3	0.9996244	AGC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	26400050	PW1766tail	autochthonous	sgMsh2 aCD4/8	26400050	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.279	106	23	6	0.260869565	exonic	Inpp5e	nonsynonymous SNV	"Inpp5e:NM_033134:exon6:c.A1382G:p.Y461C,Inpp5e:NM_001290437:exon7:c.A1382G:p.Y461C"	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	0.9999998	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	26435921	PW1766tail	autochthonous	sgMsh2 aCD4/8	26435921	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	180	17	0	0	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.T3743A:p.L1248H	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.01E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	26435934	PW1766tail	autochthonous	sgMsh2 aCD4/8	26435934	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	177	24	3	0.125	exonic	Sec16a	nonsynonymous SNV	Sec16a:NM_153125:exon3:c.T3730C:p.Y1244H	2qA3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.01E-09	TAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	31808667	PW1766tail	autochthonous	sgMsh2 aCD4/8	31808667	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.165	35	277	6	0.02166065	exonic	Qrfp	synonymous SNV	Qrfp:NM_183424:exon2:c.T252C:p.S84S	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.646424705	1	0.000688012	CAC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	32109719	PW1766tail	autochthonous	sgMsh2 aCD4/8	32109719	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	41	1	0	0	exonic	Plpp7	nonsynonymous SNV	Plpp7:NM_145521:exon2:c.G562A:p.A188T	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.912830038	1	0.9918302	TGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	36850086	PW1766tail	autochthonous	sgMsh2 aCD4/8	36850086	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	231	0	0	NA	exonic	Olfr350	synonymous SNV	Olfr350:NM_146627:exon1:c.C39T:p.I13I	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.125367216	3	1.00E-09	TCC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	37005429	PW1766tail	autochthonous	sgMsh2 aCD4/8	37005429	G	T	SNV	Mutect2;Vardict	2	0.029	305	0	0	NA	exonic	Olfr358	nonsynonymous SNV	Olfr358:NM_207235:exon1:c.C184A:p.L62I	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.113614039	3	1	AGG	nonsynonymous	GAAG	8	GAAGGAAG	NA
PW1766T2	chr2	40801460	PW1766tail	autochthonous	sgMsh2 aCD4/8	40801460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	111	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon66:c.G10346A:p.C3449Y	2qB	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.744367842	1	0.9640326	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	52280625	PW1766tail	autochthonous	sgMsh2 aCD4/8	52280625	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	93	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon42:c.C5034T:p.D1678D	2qC1.1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.270323058	3	0.9568825	AGT	synonymous	NA	NA	NA	NA
PW1766T2	chr2	60352091	PW1766tail	autochthonous	sgMsh2 aCD4/8	60352091	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	188	9	0	0	exonic	Ly75	nonsynonymous SNV	Ly75:NM_013825:exon11:c.C1739T:p.A580V	2qC1.1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	60628061	PW1766tail	autochthonous	sgMsh2 aCD4/8	60628061	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	149	33	0	0	exonic	Itgb6	nonsynonymous SNV	"Itgb6:NM_021359:exon10:c.T1347A:p.S449R,Itgb6:NM_001159564:exon13:c.T1347A:p.S449R"	2qC1.2	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.55E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	65098477	PW1766tail	autochthonous	sgMsh2 aCD4/8	65098477	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	244	183	16	0.087431694	exonic	Cobll1	nonsynonymous SNV	"Cobll1:NM_027225:exon11:c.C2504A:p.P835H,Cobll1:NM_177025:exon12:c.C2615A:p.P872H,Cobll1:NM_001363076:exon13:c.C2714A:p.P905H,Cobll1:NM_001363077:exon13:c.C2618A:p.P873H"	2qC1.3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.172379921	3	1.26E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	69661083	PW1766tail	autochthonous	sgMsh2 aCD4/8	69661083	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	253	6	0	0	exonic	Bbs5	synonymous SNV	"Bbs5:NM_001362706:exon7:c.A261C:p.I87I,Bbs5:NM_028284:exon8:c.A666C:p.I222I"	2qC2	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.352595294	2	0.9895332	TAG	synonymous	NA	NA	NA	NA
PW1766T2	chr2	76785293	PW1766tail	autochthonous	sgMsh2 aCD4/8	76785293	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	185	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon103:c.G25196T:p.W8399L,Ttn:NM_011652:exon224:c.G44939T:p.W14980L,Ttn:NM_001385708:exon261:c.G50771T:p.W16924L"	2qC3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.293829411	3	0.9639201	CCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	76814634	PW1766tail	autochthonous	sgMsh2 aCD4/8	76814634	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	131	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon53:c.G13895T:p.G4632V,Ttn:NM_011652:exon174:c.G33638T:p.G11213V,Ttn:NM_001385708:exon211:c.G39470T:p.G13157V"	2qC3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	7.64E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	76977246	PW1766tail	autochthonous	sgMsh2 aCD4/8	76977246	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	114	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_001385708:exon3:c.A142G:p.T48A,Ttn:NM_011652:exon3:c.A142G:p.T48A,Ttn:NM_028004:exon3:c.A142G:p.T48A"	2qC3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.838393254	1	0.9997214	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	82983607	PW1766tail	autochthonous	sgMsh2 aCD4/8	82983607	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.205	166	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon16:c.10263delT:p.S3423Lfs*12	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.803133724	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1766T2	chr2	86042248	PW1766tail	autochthonous	sgMsh2 aCD4/8	86042248	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	124	2	0	0	exonic	Olfr1033	stoploss	Olfr1033:NM_146578:exon3:c.A932C:p.X311S	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.84E-08	TAA	nonsynonymous	AAAT	11	AAATAAATAAA	NA
PW1766T2	chr2	86332940	PW1766tail	autochthonous	sgMsh2 aCD4/8	86332940	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	227	0	0	NA	exonic	Olfr1054	nonsynonymous SNV	Olfr1054:NM_147019:exon1:c.A415G:p.R139G	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.403525725	2	0.9999834	CTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	86733105	PW1766tail	autochthonous	sgMsh2 aCD4/8	86733105	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	183	0	0	NA	exonic	Olfr1089	nonsynonymous SNV	Olfr1089:NM_001011771:exon1:c.G506T:p.C169F	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.999019999	1	1.01E-09	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	87033379	PW1766tail	autochthonous	sgMsh2 aCD4/8	87033379	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	158	0	0	NA	exonic	Olfr1105	synonymous SNV	Olfr1105:NM_001011825:exon1:c.T841C:p.L281L	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.188050823	3	0.9999975	AAA	synonymous	NA	NA	NA	NA
PW1766T2	chr2	87491169	PW1766tail	autochthonous	sgMsh2 aCD4/8	87491169	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	360	0	0	NA	exonic	Pramel7	nonsynonymous SNV	Pramel7:NM_178250:exon2:c.G521A:p.R174K	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.094025412	3	1	CCT	nonsynonymous	TCCTT	11	TCCTTTCCTTT	NA
PW1766T2	chr2	87532804	PW1766tail	autochthonous	sgMsh2 aCD4/8	87532804	C	A	SNV	Mutect2;Vardict	2	0.02	391	0	0	NA	exonic	Olfr153	nonsynonymous SNV	Olfr153:NM_206823:exon1:c.C770A:p.T257K	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.07835451	3	1	ACG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	87746923	PW1766tail	autochthonous	sgMsh2 aCD4/8	87746923	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	270	0	0	NA	exonic	Olfr1140	synonymous SNV	Olfr1140:NM_146642:exon1:c.C726A:p.A242A	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.912830038	1	1.00E-09	CCT	synonymous	NA	NA	NA	NA
PW1766T2	chr2	87896833	PW1766tail	autochthonous	sgMsh2 aCD4/8	87896833	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	380	0	0	NA	exonic	Olfr1153	synonymous SNV	Olfr1153:NM_146640:exon1:c.G657A:p.S219S	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.603329725	2	0.9999996	CGG	synonymous	NA	NA	NA	NA
PW1766T2	chr2	87990443	PW1766tail	autochthonous	sgMsh2 aCD4/8	87990443	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	588	0	0	NA	exonic	Olfr1158	stopgain	Olfr1158:NM_146645:exon1:c.G331T:p.E111X	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.60724745	2	1.25E-09	AGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	88678553	PW1766tail	autochthonous	sgMsh2 aCD4/8	88678553	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.026	367	0	0	NA	exonic	Olfr1193	stopgain	Olfr1193:NM_001011517:exon1:c.C697T:p.Q233X	2qD	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.101860863	3	1	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	88959221	PW1766tail	autochthonous	sgMsh2 aCD4/8	88959221	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	272	0	0	NA	exonic	Olfr1212	nonsynonymous SNV	Olfr1212:NM_207140:exon1:c.C754T:p.P252S	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	89788563	PW1766tail	autochthonous	sgMsh2 aCD4/8	89788563	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	217	0	0	NA	exonic	Olfr1254	nonsynonymous SNV	Olfr1254:NM_146476:exon1:c.T788C:p.F263S	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.587658823	2	0.9999326	AAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	91263074	PW1766tail	autochthonous	sgMsh2 aCD4/8	91263074	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	114	81	7	0.086419753	exonic	Pacsin3	synonymous SNV	"Pacsin3:NM_001289677:exon7:c.T795C:p.H265H,Pacsin3:NM_001289678:exon8:c.T795C:p.H265H,Pacsin3:NM_028733:exon8:c.T795C:p.H265H,Pacsin3:NM_030880:exon8:c.T795C:p.H265H"	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.411361176	2	0.9973538	ATC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	94378712	PW1766tail	autochthonous	sgMsh2 aCD4/8	94378712	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	279	36	2	0.055555556	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon3:c.A396G:p.I132M,Ttc17:NM_001355691:exon3:c.A396G:p.I132M,Ttc17:NM_183106:exon3:c.A396G:p.I132M"	2qE1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.513222038	2	1.30E-09	TTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	104685425	PW1766tail	autochthonous	sgMsh2 aCD4/8	104685425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	160	1	0	0	exonic	Tcp11l1	synonymous SNV	Tcp11l1:NM_177190:exon8:c.T1092C:p.H364H	2qE2	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.36434847	2	0.9803444	CAT	synonymous	NA	NA	NA	NA
PW1766T2	chr2	110610171	PW1766tail	autochthonous	sgMsh2 aCD4/8	110610171	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	74	0	0	NA	exonic	Slc5a12	synonymous SNV	"Slc5a12:NM_001003915:exon4:c.T504C:p.V168V,Slc5a12:NM_001177624:exon4:c.T504C:p.V168V"	2qE3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.842310979	1	0.9966891	TTT	synonymous	NA	NA	NA	NA
PW1766T2	chr2	113791925	PW1766tail	autochthonous	sgMsh2 aCD4/8	113791925	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	156	8	0	0	exonic	Scg5	stopgain	Scg5:NM_009162:exon3:c.C331T:p.Q111X	2qE4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	1.21E-09	TGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	113833276	PW1766tail	autochthonous	sgMsh2 aCD4/8	113833276	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	292	55	6	0.109090909	exonic	Arhgap11a	synonymous SNV	Arhgap11a:NM_181416:exon12:c.A2661G:p.L887L	2qE4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.184133098	3	1.03E-09	TTA	synonymous	NA	NA	NA	NA
PW1766T2	chr2	120350199	PW1766tail	autochthonous	sgMsh2 aCD4/8	120350199	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	223	33	12	0.363636364	exonic	Vps39	nonsynonymous SNV	"Vps39:NM_001363053:exon2:c.G100A:p.G34S,Vps39:NM_147153:exon2:c.G104A:p.G35E,Vps39:NM_178851:exon2:c.G104A:p.G35E"	2qE5	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.959842744	1	1.00E-09	CCC	nonsynonymous	CTTG	8	CTTGCTTG	NA
PW1766T2	chr2	121370765	PW1766tail	autochthonous	sgMsh2 aCD4/8	121370765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	236	0	0	NA	exonic	Strc	nonsynonymous SNV	Strc:NM_080459:exon18:c.T3848C:p.L1283P	2qE5	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.238981255	3	0.9999932	TAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	130970087	PW1766tail	autochthonous	sgMsh2 aCD4/8	130970087	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	57	12	1	0.083333333	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon12:c.C1951T:p.R651C	2qF1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.9923869	CCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	142619878	PW1766tail	autochthonous	sgMsh2 aCD4/8	142619878	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.306	119	25	6	0.24	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon26:c.C3819T:p.S1273S,Kif16b:NM_001355123:exon27:c.C3852T:p.S1284S"	2qG1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	3.58E-08	CGG	synonymous	NA	NA	NA	NA
PW1766T2	chr2	147368009	PW1766tail	autochthonous	sgMsh2 aCD4/8	147368009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	85	0	0	NA	exonic	Pax1	nonsynonymous SNV	Pax1:NM_008780:exon3:c.A1022G:p.K341R	2qG2	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.536728391	2	0.9947903	AAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	148043603	PW1766tail	autochthonous	sgMsh2 aCD4/8	148043603	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	109	62	14	0.225806452	exonic	Foxa2	nonsynonymous SNV	"Foxa2:NM_001291065:exon2:c.A1309T:p.N437Y,Foxa2:NM_001291067:exon2:c.A1201T:p.N401Y,Foxa2:NM_010446:exon3:c.A1291T:p.N431Y"	2qG3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.89324141	1	0.9999739	TTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	150806224	PW1766tail	autochthonous	sgMsh2 aCD4/8	150806224	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	135	32	6	0.1875	exonic	Pygb	nonsynonymous SNV	Pygb:NM_153781:exon3:c.T377A:p.I126K	2qG3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.763956469	1	0.9934938	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	151911627	PW1766tail	autochthonous	sgMsh2 aCD4/8	151911627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	24	1	1	1	exonic	Angpt4	nonsynonymous SNV	Angpt4:NM_009641:exon1:c.T296A:p.L99Q	2qG3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.936336391	1	0.966892	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	153316757	PW1766tail	autochthonous	sgMsh2 aCD4/8	153316757	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	231	52	9	0.173076923	exonic	Kif3b	synonymous SNV	Kif3b:NM_008444:exon2:c.T477C:p.D159D	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.619000627	2	0.9991002	ATC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	153317293	PW1766tail	autochthonous	sgMsh2 aCD4/8	153317293	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	126	39	14	0.358974359	exonic	Kif3b	nonsynonymous SNV	Kif3b:NM_008444:exon2:c.A1013C:p.K338T	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.97159592	1	0.9999999	AAA	nonsynonymous	A	5	AAAAA	NA
PW1766T2	chr2	153922570	PW1766tail	autochthonous	sgMsh2 aCD4/8	153922570	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	50	0	0	NA	exonic	Bpifb3	synonymous SNV	"Bpifb3:NM_001379473:exon5:c.C381T:p.P127P,Bpifb3:NM_194357:exon5:c.C381T:p.P127P"	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	0.9995247	CCC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	156521854	PW1766tail	autochthonous	sgMsh2 aCD4/8	156521854	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	65	5	0	0	exonic	Epb41l1	nonsynonymous SNV	Epb41l1:NM_001368800:exon16:c.A2282G:p.D761G	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.509304313	2	0.9896774	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	157256458	PW1766tail	autochthonous	sgMsh2 aCD4/8	157256458	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	228	0	0	NA	exonic	Mroh8	nonsynonymous SNV	Mroh8:NM_001039557:exon6:c.T769C:p.Y257H	2qH1	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.141038117	3	1.01E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	164490330	PW1766tail	autochthonous	sgMsh2 aCD4/8	164490330	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	29	215	70	0.325581395	exonic	Dbndd2	nonsynonymous SNV	"Dbndd2:NM_001048229:exon3:c.A472G:p.S158G,Dbndd2:NM_001048227:exon4:c.A472G:p.S158G,Dbndd2:NM_001048228:exon4:c.A472G:p.S158G,Dbndd2:NM_026797:exon4:c.A472G:p.S158G"	2qH3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	1	1	0.9914463	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	164501117	PW1766tail	autochthonous	sgMsh2 aCD4/8	164501117	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	237	95	0	0	exonic	Pigt	stopgain	"Pigt:NM_001362644:exon6:c.C730T:p.Q244X,Pigt:NM_001378795:exon6:c.C463T:p.Q155X,Pigt:NM_133779:exon6:c.C730T:p.Q244X"	2qH3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.16454447	3	1.16E-09	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	166836360	PW1766tail	autochthonous	sgMsh2 aCD4/8	166836360	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	29	31	0	0	exonic	Arfgef2	synonymous SNV	Arfgef2:NM_001085495:exon6:c.C762T:p.D254D	2qH3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.560234744	2	0.7188956	ACC	synonymous	NA	NA	NA	NA
PW1766T2	chr2	172992055	PW1766tail	autochthonous	sgMsh2 aCD4/8	172992055	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	211	0	0	NA	exonic	Spo11	nonsynonymous SNV	"Spo11:NM_001083959:exon11:c.A894G:p.I298M,Spo11:NM_001083960:exon11:c.A855G:p.I285M,Spo11:NM_001305434:exon11:c.A843G:p.I281M,Spo11:NM_012046:exon12:c.A969G:p.I323M"	2qH3	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.180215372	3	1.44E-08	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	181232629	PW1766tail	autochthonous	sgMsh2 aCD4/8	181232629	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	108	5	0	0	exonic	Helz2	nonsynonymous SNV	Helz2:NM_183162:exon9:c.T6071C:p.L2024P	2qH4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.940254116	1	0.9999971	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	181589546	PW1766tail	autochthonous	sgMsh2 aCD4/8	181589546	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	428	74	3	0.040540541	exonic	Zfp512b	synonymous SNV	Zfp512b:NM_001164597:exon5:c.T810A:p.P270P	2qH4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.250734431	3	1.18E-08	CAG	synonymous	NA	NA	NA	NA
PW1766T2	chr2	181597495	PW1766tail	autochthonous	sgMsh2 aCD4/8	181597495	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	124	42	5	0.119047619	exonic	Samd10	nonsynonymous SNV	"Samd10:NM_001370751:exon2:c.G239A:p.R80H,Samd10:NM_172676:exon2:c.G206A:p.R69H"	2qH4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.77179192	1	0.994045	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr2	181649133	PW1766tail	autochthonous	sgMsh2 aCD4/8	181649133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	43	73	21	0.287671233	exonic	Prpf6	synonymous SNV	Prpf6:NM_133701:exon15:c.A2016T:p.A672A	2qH4	chr2-4896529-181649133	3	2	1	0.722	2.8285978	NA	1	0.901076861	1	0.9915822	CAC	synonymous	NA	NA	NA	NA
PW1766T2	chr3	5243250	PW1766tail	autochthonous	sgMsh2 aCD4/8	5243250	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	190	1	0	0	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.G1535A:p.S512N,Zfhx4:NM_030708:exon2:c.G1535A:p.S512N"	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.129284941	3	1.23E-09	AGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	7526411	PW1766tail	autochthonous	sgMsh2 aCD4/8	7526411	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	210	47	8	0.170212766	exonic	Zc2hc1a	synonymous SNV	Zc2hc1a:NM_173181:exon5:c.G495A:p.R165R	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.611165176	2	0.9991315	GGC	synonymous	NA	NA	NA	NA
PW1766T2	chr3	14548130	PW1766tail	autochthonous	sgMsh2 aCD4/8	14548130	-	AG	Insertion	Mutect2;Strelka2;Vardict	3	0.233	252	20	0	0	exonic	Lrrcc1	frameshift insertion	"Lrrcc1:NM_001163579:exon9:c.1277_1278insAG:p.M430Rfs*40,Lrrcc1:NM_001163580:exon9:c.1229_1230insAG:p.M414Rfs*40,Lrrcc1:NM_028915:exon9:c.1277_1278insAG:p.M430Rfs*39"	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.912830038	NA	NA	CAA	frameshift	AG	11	AGAGAGAGAGA	2
PW1766T2	chr3	14559369	PW1766tail	autochthonous	sgMsh2 aCD4/8	14559369	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	94	30	5	0.166666667	exonic	Lrrcc1	nonsynonymous SNV	"Lrrcc1:NM_001163579:exon15:c.A2453C:p.E818A,Lrrcc1:NM_001163580:exon15:c.A2405C:p.E802A,Lrrcc1:NM_028915:exon15:c.A2453C:p.E818A"	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.68560196	1	0.6014565	GAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	14565787	PW1766tail	autochthonous	sgMsh2 aCD4/8	14565787	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	271	19	1	0.052631579	exonic	Lrrcc1	frameshift deletion	"Lrrcc1:NM_001163579:exon19:c.3013delA:p.M1007fs*0,Lrrcc1:NM_001163580:exon19:c.2965delA:p.M991fs*0"	3qA1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.908912312	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr3	28621095	PW1766tail	autochthonous	sgMsh2 aCD4/8	28621095	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	60	0	0	NA	exonic	Tnik	nonsynonymous SNV	"Tnik:NM_001163008:exon18:c.C2194T:p.R732W,Tnik:NM_001163007:exon19:c.C2281T:p.R761W,Tnik:NM_001163009:exon19:c.C2281T:p.R761W,Tnik:NM_026910:exon19:c.C2281T:p.R761W"	3qA3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.32125349	3	0.5638143	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	32715416	PW1766tail	autochthonous	sgMsh2 aCD4/8	32715416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	359	214	9	0.042056075	exonic	Actl6a	nonsynonymous SNV	Actl6a:NM_019673:exon5:c.T379C:p.W127R	3qA3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.278158509	3	0.9999257	GTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	37048091	PW1766tail	autochthonous	sgMsh2 aCD4/8	37048091	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	242	42	2	0.047619048	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon83:c.G14431A:p.A4811T	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.105778588	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	37091959	PW1766tail	autochthonous	sgMsh2 aCD4/8	37091959	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	333	0	0	NA	exonic	Adad1	nonsynonymous SNV	Adad1:NM_009350:exon10:c.A1475G:p.N492S	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.105778588	3	1	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	38482712	PW1766tail	autochthonous	sgMsh2 aCD4/8	38482712	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	166	82	6	0.073170732	exonic	Ankrd50	nonsynonymous SNV	"Ankrd50:NM_001167883:exon2:c.A491C:p.N164T,Ankrd50:NM_001373894:exon2:c.A491C:p.N164T"	3qB	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.32125349	3	0.5589718	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	54222625	PW1766tail	autochthonous	sgMsh2 aCD4/8	54222625	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	112	0	0	NA	exonic	Trpc4	nonsynonymous SNV	"Trpc4:NM_001253682:exon3:c.T811C:p.Y271H,Trpc4:NM_001253683:exon3:c.T811C:p.Y271H,Trpc4:NM_016984:exon3:c.T811C:p.Y271H"	3qC	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.141038117	3	0.9999958	TTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	58555541	PW1766tail	autochthonous	sgMsh2 aCD4/8	58555541	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	83	369	96	0.260162602	exonic	Eif2a	nonsynonymous SNV	Eif2a:NM_001005509:exon12:c.A1504G:p.R502G	3qD	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	1	1	0.999995	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	62460270	PW1766tail	autochthonous	sgMsh2 aCD4/8	62460271	AG	GA	DBS	Mutect2;Vardict	2	0.216	242	11	1	0.090909091	exonic	Arhgef26	nonframeshift substitution	Arhgef26:NM_001081295:exon14:c.2534_2535GA:p.E845G	3qE1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.846228705	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	87913145	PW1766tail	autochthonous	sgMsh2 aCD4/8	87913145	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	182	627	34	0.054226475	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	1	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW1766T2	chr3	88908717	PW1766tail	autochthonous	sgMsh2 aCD4/8	88908717	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	180	49	10	0.204081633	exonic	Gon4l	stopgain	"Gon4l:NM_027389:exon31:c.C6507A:p.C2169X,Gon4l:NM_001242372:exon32:c.C6558A:p.C2186X"	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.791380548	1	0.9998297	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	90193167	PW1766tail	autochthonous	sgMsh2 aCD4/8	90193167	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	144	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon32:c.A4499C:p.Q1500P	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.834475528	1	0.9999492	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	90237742	PW1766tail	autochthonous	sgMsh2 aCD4/8	90237742	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	216	8	3	0.375	exonic	Creb3l4	nonsynonymous SNV	"Creb3l4:NM_001307935:exon8:c.G937A:p.D313N,Creb3l4:NM_001307934:exon10:c.G1102A:p.D368N,Creb3l4:NM_030080:exon10:c.G1102A:p.D368N"	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.830557803	1	0.9999992	TCT	nonsynonymous	CATCT	10	CATCTCATCT	NA
PW1766T2	chr3	92433432	PW1766tail	autochthonous	sgMsh2 aCD4/8	92433432	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	156	3	2	0.666666667	exonic	Sprr2k	nonsynonymous SNV	Sprr2k:NM_011477:exon2:c.C88T:p.P30S	3qF1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.199804	3	0.9999912	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	93471380	PW1766tail	autochthonous	sgMsh2 aCD4/8	93471380	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	78	0	0	NA	exonic	Tchhl1	nonsynonymous SNV	Tchhl1:NM_027762:exon3:c.G1390C:p.A464P	3qF2.1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.912830038	1	0.9997867	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	94886444	PW1766tail	autochthonous	sgMsh2 aCD4/8	94886444	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.215	104	1005	222	0.220895522	exonic	Psmb4	nonsynonymous SNV	Psmb4:NM_008945:exon2:c.T344A:p.M115K	3qF2.1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.842310979	1	0.9995549	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	95169690	PW1766tail	autochthonous	sgMsh2 aCD4/8	95169690	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	105	0	0	NA	exonic	Sema6c	synonymous SNV	"Sema6c:NM_011351:exon10:c.T1086C:p.S362S,Sema6c:NM_001272024:exon13:c.T1086C:p.S362S"	3qF2.1	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.85014643	1	0.9997126	CTG	synonymous	NA	NA	NA	NA
PW1766T2	chr3	105678604	PW1766tail	autochthonous	sgMsh2 aCD4/8	105678604	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	185	82	4	0.048780488	exonic	Ddx20	synonymous SNV	Ddx20:NM_017397:exon11:c.T2424A:p.A808A	3qF2.2	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.246816706	3	0.9998	CAG	synonymous	NA	NA	NA	NA
PW1766T2	chr3	108397303	PW1766tail	autochthonous	sgMsh2 aCD4/8	108397303	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	93	2	0	0	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon20:c.G6739A:p.A2247T,Celsr2:NM_017392:exon20:c.G6739A:p.A2247T"	3qF3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.289911686	3	0.8812082	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	114097865	PW1766tail	autochthonous	sgMsh2 aCD4/8	114097865	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	144	0	0	NA	exonic	Col11a1	frameshift deletion	Col11a1:NM_007729:exon9:c.1278delG:p.E428Nfs*63	3qF3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.207639451	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1766T2	chr3	127677713	PW1766tail	autochthonous	sgMsh2 aCD4/8	127677713	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	204	2	0	0	exonic	Alpk1	nonsynonymous SNV	Alpk1:NM_027808:exon11:c.A3119G:p.Y1040C	3qG2	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.9999998	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	132948130	PW1766tail	autochthonous	sgMsh2 aCD4/8	132948130	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	54	98	24	0.244897959	exonic	Npnt	nonsynonymous SNV	"Npnt:NM_001029836:exon2:c.T89C:p.V30A,Npnt:NM_001287101:exon2:c.T89C:p.V30A,Npnt:NM_001287102:exon2:c.T89C:p.V30A,Npnt:NM_033525:exon2:c.T89C:p.V30A"	3qG3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.470127058	2	0.9808686	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	133348164	PW1766tail	autochthonous	sgMsh2 aCD4/8	133348164	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	281	225	52	0.231111111	exonic	Ppa2	nonsynonymous SNV	"Ppa2:NM_001293641:exon7:c.A614T:p.N205I,Ppa2:NM_146141:exon7:c.A614T:p.N205I"	3qG3	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.756121019	1	0.9998272	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr3	145009864	PW1766tail	autochthonous	sgMsh2 aCD4/8	145009864	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.199	172	0	0	NA	exonic	Clca1	nonsynonymous SNV	Clca1:NM_017474:exon10:c.A1511G:p.N504S	3qH2	chr3-3792373-159911278	3	2	1	0.722	2.8285978	NA	1	0.779627371	1	0.9993983	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	24649551	PW1766tail	autochthonous	sgMsh2 aCD4/8	24649551	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	173	3	0	0	exonic	Klhl32	nonsynonymous SNV	"Klhl32:NM_001033531:exon6:c.T1244C:p.L415P,Klhl32:NM_001355618:exon6:c.T638C:p.L213P,Klhl32:NM_001163020:exon7:c.T1343C:p.L448P"	4qA3	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.587658823	2	0.9994503	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	40279327	PW1766tail	autochthonous	sgMsh2 aCD4/8	40279327	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	26	290	89	0.306896552	exonic	Ndufb6	nonsynonymous SNV	Ndufb6:NM_001033305:exon1:c.A11G:p.Y4C	4qA5	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9871152	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	42973683	PW1766tail	autochthonous	sgMsh2 aCD4/8	42973683	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	100	0	0	NA	exonic	1700022I11Rik	synonymous SNV	1700022I11Rik:NM_026088:exon2:c.A3015G:p.Q1005Q	4qA5	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999995	AAA	synonymous	ATCCC	10	ATCCCATCCC	NA
PW1766T2	chr4	43569242	PW1766tail	autochthonous	sgMsh2 aCD4/8	43569242	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.316	235	4	0	0	exonic	Gba2	synonymous SNV	Gba2:NM_172692:exon10:c.T1599C:p.Y533Y	4qA5	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	CAT	synonymous	NA	NA	NA	NA
PW1766T2	chr4	43653139	PW1766tail	autochthonous	sgMsh2 aCD4/8	43653139	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	94	0	0	NA	exonic	Spag8	synonymous SNV	"Spag8:NM_001007463:exon2:c.T321G:p.P107P,Spag8:NM_001290462:exon2:c.T321G:p.P107P"	4qA5	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999989	AAG	synonymous	NA	NA	NA	NA
PW1766T2	chr4	45279417	PW1766tail	autochthonous	sgMsh2 aCD4/8	45279417	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	34	2	1	0.5	exonic	Frmpd1	nonsynonymous SNV	Frmpd1:NM_001081172:exon15:c.C2141T:p.S714F	4qB1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.948089567	1	0.9905089	TCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	47410730	PW1766tail	autochthonous	sgMsh2 aCD4/8	47410730	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	126	83	3	0.036144578	exonic	Tgfbr1	frameshift deletion	"Tgfbr1:NM_001312869:exon8:c.1216delA:p.T408Hfs*14,Tgfbr1:NM_001312868:exon9:c.1453delA:p.T487Hfs*14,Tgfbr1:NM_009370:exon9:c.1465delA:p.T491Hfs*14"	4qB1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.340842117	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr4	64006428	PW1766tail	autochthonous	sgMsh2 aCD4/8	64006428	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	100	43	14	0.325581395	exonic	Tnc	nonsynonymous SNV	"Tnc:NM_001369213:exon9:c.A2249C:p.K750T,Tnc:NM_001369211:exon10:c.A3032C:p.K1011T,Tnc:NM_001369212:exon10:c.A3032C:p.K1011T,Tnc:NM_001369214:exon10:c.A3032C:p.K1011T,Tnc:NM_011607:exon10:c.A3032C:p.K1011T"	4qC1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999995	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	73734497	PW1766tail	autochthonous	sgMsh2 aCD4/8	73734497	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	209	46	9	0.195652174	exonic	Rasef	nonsynonymous SNV	Rasef:NM_001017427:exon15:c.A1523G:p.Y508C	4qC3	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	87840831	PW1766tail	autochthonous	sgMsh2 aCD4/8	87840831	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.266	108	53	0	0	exonic	Mllt3	frameshift insertion	Mllt3:NM_027326:exon5:c.978dupA:p.Q327Tfs*4	4qC4	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	1
PW1766T2	chr4	102915146	PW1766tail	autochthonous	sgMsh2 aCD4/8	102915146	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	92	0	0	NA	exonic	Sgip1	nonsynonymous SNV	"Sgip1:NM_001285862:exon10:c.C638T:p.T213I,Sgip1:NM_001285859:exon13:c.C731T:p.T244I,Sgip1:NM_001285860:exon13:c.C731T:p.T244I,Sgip1:NM_144906:exon13:c.C734T:p.T245I,Sgip1:NM_001285852:exon14:c.C818T:p.T273I"	4qC6	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.215474902	3	0.9977725	ACT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	112165705	PW1766tail	autochthonous	sgMsh2 aCD4/8	112165705	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	140	0	0	NA	exonic	Skint4	nonsynonymous SNV	"Skint4:NM_001357339:exon9:c.C1147A:p.H383N,Skint4:NM_178786:exon11:c.C1396A:p.H466N,Skint4:NM_001347180:exon12:c.C1372A:p.H458N"	4qD1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.521057489	2	0.9999601	TCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	115039133	PW1766tail	autochthonous	sgMsh2 aCD4/8	115039133	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	177	11	2	0.181818182	exonic	Stil	synonymous SNV	"Stil:NM_001304551:exon15:c.A2136T:p.V712V,Stil:NM_001304559:exon15:c.A1878T:p.V626V,Stil:NM_001304555:exon16:c.A2811T:p.V937V,Stil:NM_009185:exon16:c.A2814T:p.V938V,Stil:NM_001304553:exon17:c.A1503T:p.V501V"	4qD1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.270323058	3	0.996521	TAG	synonymous	NA	NA	NA	NA
PW1766T2	chr4	118144005	PW1766tail	autochthonous	sgMsh2 aCD4/8	118144005	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.344	65	93	25	0.268817204	exonic	Kdm4a	nonsynonymous SNV	"Kdm4a:NM_001161823:exon18:c.C2564A:p.A855D,Kdm4a:NM_172382:exon18:c.C2564A:p.A855D"	4qD2.1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.99994	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	119178120	PW1766tail	autochthonous	sgMsh2 aCD4/8	119178120	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	149	1	0	0	exonic	Ermap	nonsynonymous SNV	"Ermap:NM_001369066:exon13:c.T1586C:p.M529T,Ermap:NM_013848:exon13:c.T1592C:p.M531T"	4qD2.1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.219392627	3	0.9999147	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	126151828	PW1766tail	autochthonous	sgMsh2 aCD4/8	126151828	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.265	82	27	2	0.074074074	exonic	Sh3d21	frameshift deletion	"Sh3d21:NM_025856:exon10:c.709delA:p.T237Pfs*72,Sh3d21:NM_001162533:exon14:c.1057delA:p.T353Pfs*72"	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW1766T2	chr4	126814468	PW1766tail	autochthonous	sgMsh2 aCD4/8	126814468	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	62	17	2	0.117647059	exonic	AU040320	synonymous SNV	"AU040320:NM_001035525:exon4:c.G876A:p.Q292Q,AU040320:NM_001035526:exon4:c.G876A:p.Q292Q,AU040320:NM_133886:exon4:c.G876A:p.Q292Q,AU040320:NM_001355196:exon6:c.G813A:p.Q271Q"	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.399607999	2	0.9344774	AGG	synonymous	NA	NA	NA	NA
PW1766T2	chr4	129656328	PW1766tail	autochthonous	sgMsh2 aCD4/8	129656328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	131	50	9	0.18	exonic	Kpna6	nonsynonymous SNV	Kpna6:NM_008468:exon5:c.A406G:p.N136D	4qD2.2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.920665489	1	0.9999993	TTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	134124896	PW1766tail	autochthonous	sgMsh2 aCD4/8	134124896	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	84	1	1	1	exonic	Ubxn11	synonymous SNV	Ubxn11:NM_026257:exon11:c.T906G:p.G302G	4qD3	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999956	GTC	synonymous	NA	NA	NA	NA
PW1766T2	chr4	134125147	PW1766tail	autochthonous	sgMsh2 aCD4/8	134125147	G	A	SNV	Mutect2;Vardict	2	0.048	110	3	3	1	exonic	Ubxn11	nonsynonymous SNV	Ubxn11:NM_026257:exon12:c.G1046A:p.G349D	4qD3	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.188050823	3	0.9998839	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	141000734	PW1766tail	autochthonous	sgMsh2 aCD4/8	141000734	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	54	28	10	0.357142857	exonic	Atp13a2	nonsynonymous SNV	"Atp13a2:NM_001164366:exon15:c.T1388C:p.V463A,Atp13a2:NM_001379619:exon15:c.T1385C:p.V462A,Atp13a2:NM_001379620:exon15:c.T1385C:p.V462A,Atp13a2:NM_001379621:exon15:c.T1385C:p.V462A,Atp13a2:NM_001379622:exon15:c.T1388C:p.V463A,Atp13a2:NM_029097:exon15:c.T1388C:p.V463A"	4qD3	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9997263	GTG	nonsynonymous	GGT	10	GGTGGTGGTG	NA
PW1766T2	chr4	144273828	PW1766tail	autochthonous	sgMsh2 aCD4/8	144273828	C	T	SNV	Mutect2;MuSe;Vardict	3	0.052	355	0	0	NA	exonic	Pramel5	stopgain	Pramel5:NM_001085418:exon2:c.G177A:p.W59X	4qE1	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	0.203721725	3	1.01E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr4	151017986	PW1766tail	autochthonous	sgMsh2 aCD4/8	151017986	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	79	3	1	0.333333333	exonic	Per3	synonymous SNV	"Per3:NM_001289877:exon15:c.C1819T:p.L607L,Per3:NM_011067:exon15:c.C1819T:p.L607L,Per3:NM_001289878:exon16:c.C877T:p.L293L"	4qE2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999913	AGG	synonymous	NA	NA	NA	NA
PW1766T2	chr4	151018059	PW1766tail	autochthonous	sgMsh2 aCD4/8	151018059	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	79	10	1	0.1	exonic	Per3	synonymous SNV	"Per3:NM_001289877:exon15:c.A1746G:p.E582E,Per3:NM_011067:exon15:c.A1746G:p.E582E,Per3:NM_001289878:exon16:c.A804G:p.E268E"	4qE2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999913	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr4	155080851	PW1766tail	autochthonous	sgMsh2 aCD4/8	155080851	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	168	511	201	0.39334638	exonic	Rer1	nonsynonymous SNV	"Rer1:NM_026395:exon3:c.T134C:p.V45A,Rer1:NM_001362981:exon4:c.T134C:p.V45A"	4qE2	chr4-3834436-156200568	2	1	1	0.722	2.8285978	NA	1	1	1	1.04E-09	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	5673416	PW1766tail	autochthonous	sgMsh2 aCD4/8	5673416	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	138	121	28	0.231404959	exonic	Steap2	nonsynonymous SNV	"Steap2:NM_001285470:exon5:c.T1463C:p.V488A,Steap2:NM_001103156:exon6:c.T1463C:p.V488A,Steap2:NM_001103157:exon6:c.T1463C:p.V488A,Steap2:NM_001285469:exon6:c.T1463C:p.V488A,Steap2:NM_028734:exon6:c.T1463C:p.V488A"	5qA1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.80705145	1	0.9995914	CAC	nonsynonymous	CATCA	11	CATCACATCAC	NA
PW1766T2	chr5	21763449	PW1766tail	autochthonous	sgMsh2 aCD4/8	21763449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	157	300	76	0.253333333	exonic	Dnajc2	synonymous SNV	Dnajc2:NM_009584:exon12:c.A1239G:p.K413K	5qA3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	1	1	1.18E-09	GTT	synonymous	T	5	TTTTT	NA
PW1766T2	chr5	22537531	PW1766tail	autochthonous	sgMsh2 aCD4/8	22537531	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	195	70	21	0.3	exonic	Orc5	synonymous SNV	Orc5:NM_011959:exon4:c.G432A:p.L144L	5qA3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.897159136	1	9.11E-09	GCA	synonymous	NA	NA	NA	NA
PW1766T2	chr5	24878736	PW1766tail	autochthonous	sgMsh2 aCD4/8	24878736	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	190	34	7	0.205882353	exonic	Prkag2	nonsynonymous SNV	"Prkag2:NM_001170555:exon4:c.A248G:p.N83S,Prkag2:NM_001170556:exon4:c.A245G:p.N82S,Prkag2:NM_001310480:exon6:c.A596G:p.N199S,Prkag2:NM_145401:exon8:c.A965G:p.N322S"	5qA3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.991184548	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	30916973	PW1766tail	autochthonous	sgMsh2 aCD4/8	30916973	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	79	1	0	0	exonic	Emilin1	nonsynonymous SNV	Emilin1:NM_133918:exon4:c.A557G:p.Q186R	5qB1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.89324141	1	0.9996121	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	31251073	PW1766tail	autochthonous	sgMsh2 aCD4/8	31251073	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	117	292	33	0.113013699	exonic	Nrbp1	nonsynonymous SNV	"Nrbp1:NM_147201:exon18:c.T1552C:p.F518L,Nrbp1:NM_001347326:exon19:c.T1576C:p.F526L"	5qB1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.411361176	2	0.9977514	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	31532581	PW1766tail	autochthonous	sgMsh2 aCD4/8	31532581	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	61	65	18	0.276923077	exonic	Slc4a1ap	nonsynonymous SNV	"Slc4a1ap:NM_001347328:exon5:c.C1181T:p.A394V,Slc4a1ap:NM_001359154:exon5:c.C1181T:p.A394V,Slc4a1ap:NM_001359156:exon5:c.C1181T:p.A394V,Slc4a1ap:NM_001359157:exon5:c.C1181T:p.A394V,Slc4a1ap:NM_009206:exon5:c.C1181T:p.A394V"	5qB1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.474044784	2	0.990267	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	34634893	PW1766tail	autochthonous	sgMsh2 aCD4/8	34634893	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	141	161	44	0.273291925	exonic	Mfsd10	nonsynonymous SNV	"Mfsd10:NM_001356978:exon8:c.A875G:p.Y292C,Mfsd10:NM_001356979:exon8:c.A875G:p.Y292C,Mfsd10:NM_026660:exon8:c.A875G:p.Y292C"	5qB2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.9999823	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	34966581	PW1766tail	autochthonous	sgMsh2 aCD4/8	34966581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	89	14	6	0.428571429	exonic	Rgs12	synonymous SNV	Rgs12:NM_173402:exon2:c.T1707C:p.C569C	5qB2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.932418665	1	0.9999672	GTG	synonymous	NA	NA	NA	NA
PW1766T2	chr5	35833113	PW1766tail	autochthonous	sgMsh2 aCD4/8	35833113	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	67	0	0	NA	exonic	Ablim2	nonsynonymous SNV	"Ablim2:NM_001177697:exon9:c.C883T:p.P295S,Ablim2:NM_001177699:exon9:c.C883T:p.P295S,Ablim2:NM_001177700:exon9:c.C883T:p.P295S,Ablim2:NM_177678:exon9:c.C883T:p.P295S,Ablim2:NM_001177696:exon10:c.C940T:p.P314S,Ablim2:NM_001177698:exon10:c.C940T:p.P314S"	5qB3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.89324141	1	0.9988598	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	36967293	PW1766tail	autochthonous	sgMsh2 aCD4/8	36967293	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	197	17	0	0	exonic	Wfs1	synonymous SNV	Wfs1:NM_011716:exon8:c.G2253A:p.T751T	5qB3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.172379921	3	1.83E-08	CCG	synonymous	NA	NA	NA	NA
PW1766T2	chr5	37318243	PW1766tail	autochthonous	sgMsh2 aCD4/8	37318243	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	102	1	0	0	exonic	Evc	nonsynonymous SNV	Evc:NM_021292:exon10:c.C1384T:p.L462F	5qB3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.336924392	2	0.6709714	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	38713198	PW1766tail	autochthonous	sgMsh2 aCD4/8	38713198	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	278	0	0	NA	exonic	Clnk	nonsynonymous SNV	Clnk:NM_013748:exon18:c.C1016T:p.T339I	5qB3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.673848783	2	0.8485855	TGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	62642852	PW1766tail	autochthonous	sgMsh2 aCD4/8	62642852	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	188	18	5	0.277777778	exonic	Arap2	synonymous SNV	Arap2:NM_178407:exon23:c.T3831C:p.T1277T	5qC3.1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.662095607	2	0.8719076	TAG	synonymous	NA	NA	NA	NA
PW1766T2	chr5	63808233	PW1766tail	autochthonous	sgMsh2 aCD4/8	63808233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	175	0	0	NA	exonic	Nwd2	nonsynonymous SNV	Nwd2:NM_177006:exon7:c.A5159G:p.H1720R	5qC3.1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	1	1	1.02E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	66451750	PW1766tail	autochthonous	sgMsh2 aCD4/8	66451750	C	T	SNV	Mutect2;Vardict	2	0.04	133	62	1	0.016129032	exonic	Apbb2	nonsynonymous SNV	"Apbb2:NM_001201413:exon5:c.G553A:p.V185I,Apbb2:NM_001201414:exon5:c.G553A:p.V185I,Apbb2:NM_001201415:exon5:c.G553A:p.V185I,Apbb2:NM_001310626:exon5:c.G553A:p.V185I,Apbb2:NM_009686:exon5:c.G553A:p.V185I"	5qC3.1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.156709019	3	0.9999985	ACC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	76855003	PW1766tail	autochthonous	sgMsh2 aCD4/8	76855003	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	115	0	0	NA	exonic	Cracd	synonymous SNV	Cracd:NM_001163793:exon5:c.C423T:p.N141N	5qC3.3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.615082901	2	0.965012	ACC	synonymous	NA	NA	NA	NA
PW1766T2	chr5	86185450	PW1766tail	autochthonous	sgMsh2 aCD4/8	86185450	G	T	SNV	Mutect2;Vardict	2	0.037	144	0	0	NA	exonic	Gnrhr	nonsynonymous SNV	"Gnrhr:NM_001310653:exon2:c.C560A:p.S187Y,Gnrhr:NM_010323:exon2:c.C560A:p.S187Y"	5qE1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.144955843	3	0.9999998	AGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	87254425	PW1766tail	autochthonous	sgMsh2 aCD4/8	87254425	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	286	0	0	NA	exonic	Ugt2b37	nonsynonymous SNV	Ugt2b37:NM_053215:exon1:c.A346G:p.M116V	5qE1	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.877570509	1	1.02E-09	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	100768405	PW1766tail	autochthonous	sgMsh2 aCD4/8	100768405	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	190	14	4	0.285714286	exonic	Helq	stopgain	Helq:NM_001081107:exon15:c.T2700G:p.Y900X	5qE4	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.991184548	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	103850724	PW1766tail	autochthonous	sgMsh2 aCD4/8	103850724	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.212	169	61	7	0.114754098	exonic	Aff1	frameshift deletion	"Aff1:NM_001080798:exon20:c.3582delA:p.V1196Cfs*23,Aff1:NM_133919:exon20:c.3558delA:p.V1188Cfs*23"	5qE5	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.830557803	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1766T2	chr5	109340257	PW1766tail	autochthonous	sgMsh2 aCD4/8	109340257	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.465	353	0	0	NA	exonic	Vmn2r16	frameshift insertion	"Vmn2r16:NM_001104627:exon3:c.996dupT:p.L334Ffs*23,Vmn2r16:NM_001385189:exon3:c.996dupT:p.L334Ffs*23"	5qF	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	2	1	NA	NA	AAT	frameshift	T	5	TTTTT	1
PW1766T2	chr5	123954708	PW1766tail	autochthonous	sgMsh2 aCD4/8	123954708	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.249	216	1	0	0	exonic	Ccdc62	synonymous SNV	Ccdc62:NM_001134767:exon9:c.G1755A:p.R585R	5qF	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.975513646	1	1.00E-09	GGA	synonymous	NA	NA	NA	NA
PW1766T2	chr5	124459865	PW1766tail	autochthonous	sgMsh2 aCD4/8	124459865	A	T	SNV	Mutect2;Vardict	2	0.032	138	537	3	0.005586592	exonic	Kmt5a	nonsynonymous SNV	"Kmt5a:NM_001310723:exon6:c.A784T:p.I262F,Kmt5a:NM_001310725:exon6:c.A577T:p.I193F,Kmt5a:NM_001310727:exon6:c.A577T:p.I193F,Kmt5a:NM_030241:exon7:c.A742T:p.I248F"	5qF	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.125367216	3	0.9999999	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	130148206	PW1766tail	autochthonous	sgMsh2 aCD4/8	130148206	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	121	3	2	0.666666667	exonic	Kctd7	synonymous SNV	Kctd7:NM_172509:exon2:c.A297G:p.R99R	5qG1.3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.415278901	2	0.9986386	GAG	synonymous	ATCG	9	ATCGATCGA	NA
PW1766T2	chr5	135371382	PW1766tail	autochthonous	sgMsh2 aCD4/8	135371382	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	108	29	3	0.103448276	exonic	Nsun5	nonsynonymous SNV	"Nsun5:NM_001359617:exon3:c.G358T:p.D120Y,Nsun5:NM_145414:exon3:c.G358T:p.D120Y"	5qG2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.305582588	3	0.7800333	GGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	135639208	PW1766tail	autochthonous	sgMsh2 aCD4/8	135639208	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	136	51	12	0.235294118	exonic	Rhbdd2	synonymous SNV	"Rhbdd2:NM_146002:exon3:c.T705A:p.S235S,Rhbdd2:NM_001357037:exon4:c.T282A:p.S94S"	5qG2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.904994587	1	0.9999989	CTT	synonymous	NA	NA	NA	NA
PW1766T2	chr5	143375330	PW1766tail	autochthonous	sgMsh2 aCD4/8	143375330	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.224	79	0	0	NA	exonic	Grid2ip	synonymous SNV	"Grid2ip:NM_001347529:exon5:c.G519A:p.P173P,Grid2ip:NM_133355:exon5:c.G498A:p.P166P,Grid2ip:NM_001159321:exon6:c.G1035A:p.P345P"	5qG2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.877570509	1	0.9993228	CGG	synonymous	NA	NA	NA	NA
PW1766T2	chr5	144174511	PW1766tail	autochthonous	sgMsh2 aCD4/8	144174511	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	128	31	8	0.258064516	exonic	Lmtk2	nonsynonymous SNV	Lmtk2:NM_001081109:exon11:c.C2048T:p.S683L	5qG2	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.955925018	1	0.9999999	TCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr5	150662084	PW1766tail	autochthonous	sgMsh2 aCD4/8	150662084	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	386	112	29	0.258928571	exonic	N4bp2l2	nonsynonymous SNV	"N4bp2l2:NM_001362416:exon2:c.A430G:p.T144A,N4bp2l2:NM_201369:exon2:c.A430G:p.T144A"	5qG3	chr5-3582301-150662084	3	2	1	0.722	2.8285978	NA	1	0.869735058	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	12555419	PW1766tail	autochthonous	sgMsh2 aCD4/8	12555419	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	285	0	0	NA	exonic	Thsd7a	synonymous SNV	Thsd7a:NM_001164805:exon2:c.C465T:p.D155D	6qA1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.152791294	3	1.00E-09	TGT	synonymous	TGTCCT	13	TGTCCTTGTCCTT	NA
PW1766T2	chr6	22233961	PW1766tail	autochthonous	sgMsh2 aCD4/8	22233961	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	387	9	1	0.111111111	exonic	Cped1	nonsynonymous SNV	Cped1:NM_001081351:exon19:c.A2573T:p.Q858L	6qA3.1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.783545097	1	0.9999999	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	23626800	PW1766tail	autochthonous	sgMsh2 aCD4/8	23626800	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	205	5	0	0	exonic	Cadps2	nonsynonymous SNV	"Cadps2:NM_001252105:exon3:c.C488G:p.A163G,Cadps2:NM_001252106:exon3:c.C488G:p.A163G,Cadps2:NM_001252107:exon3:c.C488G:p.A163G,Cadps2:NM_001252108:exon3:c.C488G:p.A163G,Cadps2:NM_001252109:exon3:c.C488G:p.A163G,Cadps2:NM_001252110:exon3:c.C488G:p.A163G,Cadps2:NM_153163:exon3:c.C488G:p.A163G"	6qA3.1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.195886274	3	0.9999998	GGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	28830273	PW1766tail	autochthonous	sgMsh2 aCD4/8	28830273	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	337	8	0	0	exonic	Lrrc4	nonsynonymous SNV	Lrrc4:NM_138682:exon1:c.C1342T:p.P448S	6qA3.3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.172379921	3	1.00E-09	GGG	nonsynonymous	G	5	GGGGG	NA
PW1766T2	chr6	29482650	PW1766tail	autochthonous	sgMsh2 aCD4/8	29482650	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.212	117	0	0	NA	exonic	Kcp	synonymous SNV	Kcp:NM_001029985:exon37:c.G4419A:p.R1473R	6qA3.3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.830557803	1	0.9996538	CCC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	40921802	PW1766tail	autochthonous	sgMsh2 aCD4/8	40921802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.052	394	0	0	NA	exonic	1700074P13Rik	nonsynonymous SNV	"1700074P13Rik:NM_001361930:exon5:c.A511G:p.S171G,1700074P13Rik:NM_028550:exon6:c.A511G:p.S171G"	6qB1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.203721725	3	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	42593776	PW1766tail	autochthonous	sgMsh2 aCD4/8	42593776	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	286	0	0	NA	exonic	Tcaf3	synonymous SNV	Tcaf3:NM_203396:exon2:c.A1041G:p.V347V	6qB2.1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.160626745	3	1.00E-09	CTA	synonymous	NA	NA	NA	NA
PW1766T2	chr6	43305108	PW1766tail	autochthonous	sgMsh2 aCD4/8	43305108	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	173	0	0	NA	exonic	Nobox	nonsynonymous SNV	Nobox:NM_130869:exon8:c.A1030C:p.S344R	6qB2.1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.305582588	3	0.8660489	CTT	nonsynonymous	TGCT	10	TGCTTGCTTG	NA
PW1766T2	chr6	54943360	PW1766tail	autochthonous	sgMsh2 aCD4/8	54943360	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	94	4	0	0	exonic	Nod1	nonsynonymous SNV	"Nod1:NM_001171007:exon4:c.T1972C:p.C658R,Nod1:NM_172729:exon4:c.T1972C:p.C658R"	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.223310353	3	0.9969467	CAG	nonsynonymous	GCAGC	10	GCAGCGCAGC	NA
PW1766T2	chr6	55383311	PW1766tail	autochthonous	sgMsh2 aCD4/8	55383311	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	51	0	0	NA	exonic	Ghrhr	nonsynonymous SNV	Ghrhr:NM_001003685:exon7:c.T641A:p.M214K	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.348677568	2	0.6414163	ATG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	56137373	PW1766tail	autochthonous	sgMsh2 aCD4/8	56137373	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	193	0	0	NA	exonic	Pde1c	synonymous SNV	"Pde1c:NM_001159952:exon13:c.G1527A:p.R509R,Pde1c:NM_001159956:exon13:c.G1443A:p.R481R,Pde1c:NM_001025568:exon14:c.G1554A:p.R518R,Pde1c:NM_001159953:exon14:c.G1554A:p.R518R,Pde1c:NM_001159957:exon14:c.G1470A:p.R490R,Pde1c:NM_001355475:exon14:c.G1554A:p.R518R,Pde1c:NM_001159955:exon15:c.G1554A:p.R518R,Pde1c:NM_001159960:exon15:c.G1554A:p.R518R,Pde1c:NM_011054:exon15:c.G1554A:p.R518R"	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.156709019	3	5.01E-09	CCC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	56174931	PW1766tail	autochthonous	sgMsh2 aCD4/8	56174931	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	249	0	0	NA	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon5:c.T559C:p.Y187H,Pde1c:NM_001159956:exon5:c.T475C:p.Y159H,Pde1c:NM_001025568:exon6:c.T586C:p.Y196H,Pde1c:NM_001159953:exon6:c.T586C:p.Y196H,Pde1c:NM_001159957:exon6:c.T502C:p.Y168H,Pde1c:NM_001355475:exon6:c.T586C:p.Y196H,Pde1c:NM_001159955:exon7:c.T586C:p.Y196H,Pde1c:NM_001159960:exon7:c.T586C:p.Y196H,Pde1c:NM_011054:exon7:c.T586C:p.Y196H"	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.497551137	2	1.60E-09	TAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	57510835	PW1766tail	autochthonous	sgMsh2 aCD4/8	57510835	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	180	3	0	0	exonic	Ppm1k	synonymous SNV	Ppm1k:NM_175523:exon7:c.T1002C:p.G334G	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.767874195	1	0.9988561	TAC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	57662104	PW1766tail	autochthonous	sgMsh2 aCD4/8	57662104	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	140	0	0	NA	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon21:c.A2549C:p.N850T	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.740450117	1	0.9759801	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	57844277	PW1766tail	autochthonous	sgMsh2 aCD4/8	57844277	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	405	0	0	NA	exonic	Vmn1r21	nonsynonymous SNV	Vmn1r21:NM_134183:exon1:c.C181T:p.L61F	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.720861489	1	0.9967401	AGC	nonsynonymous	GCAA	8	GCAAGCAA	NA
PW1766T2	chr6	58008788	PW1766tail	autochthonous	sgMsh2 aCD4/8	58008788	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.203	346	0	0	NA	exonic	Vmn1r26	nonsynonymous SNV	Vmn1r26:NM_134172:exon1:c.A415C:p.S139R	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.795298273	1	0.9999999	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	58215386	PW1766tail	autochthonous	sgMsh2 aCD4/8	58215386	T	C	SNV	Mutect2;MuSe;Vardict	3	0.063	612	0	0	NA	exonic	Vmn1r27	nonsynonymous SNV	Vmn1r27:NM_134436:exon1:c.A632G:p.H211R	6qB3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.246816706	3	1.00E-09	GTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	66732029	PW1766tail	autochthonous	sgMsh2 aCD4/8	66732029	A	G	SNV	Mutect2;Vardict	2	0.023	868	0	0	NA	exonic	Vmn1r37	nonsynonymous SNV	Vmn1r37:NM_134165:exon1:c.A638G:p.H213R	6qC1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.090107686	3	1	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	71846340	PW1766tail	autochthonous	sgMsh2 aCD4/8	71846340	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	136	238	14	0.058823529	exonic	Immt	synonymous SNV	"Immt:NM_001253681:exon3:c.T174C:p.I58I,Immt:NM_001253686:exon3:c.T174C:p.I58I,Immt:NM_001253687:exon3:c.T174C:p.I58I,Immt:NM_001253688:exon3:c.T174C:p.I58I,Immt:NM_001253689:exon3:c.T174C:p.I58I,Immt:NM_001362134:exon3:c.T174C:p.I58I,Immt:NM_001362136:exon3:c.T174C:p.I58I,Immt:NM_001362137:exon3:c.T174C:p.I58I,Immt:NM_001362138:exon3:c.T174C:p.I58I,Immt:NM_029673:exon3:c.T174C:p.I58I"	6qC1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.227228078	3	0.999642	TTG	synonymous	NA	NA	NA	NA
PW1766T2	chr6	72788310	PW1766tail	autochthonous	sgMsh2 aCD4/8	72788310	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	55	5	0	0	exonic	Tcf7l1	frameshift deletion	"Tcf7l1:NM_001079822:exon3:c.336delT:p.F112Lfs*11,Tcf7l1:NM_009332:exon3:c.336delT:p.F112Lfs*11"	6qC1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.65034243	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr6	76882626	PW1766tail	autochthonous	sgMsh2 aCD4/8	76882626	A	G	SNV	Mutect2;Vardict	2	0.025	212	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon18:c.T2642C:p.V881A,Ctnna2:NM_009819:exon19:c.T2786C:p.V929A,Ctnna2:NM_145732:exon19:c.T2642C:p.V881A,Ctnna2:NM_001109764:exon20:c.T2786C:p.V929A"	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.097943137	3	1.00E-09	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	82956559	PW1766tail	autochthonous	sgMsh2 aCD4/8	82956559	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.17	257	0	0	NA	exonic	M1ap	synonymous SNV	M1ap:NM_033079:exon2:c.A93G:p.V31V	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.666013332	2	0.920102	TAC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	83026292	PW1766tail	autochthonous	sgMsh2 aCD4/8	83026292	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	85	24	0	0	exonic	M1ap	nonsynonymous SNV	M1ap:NM_033079:exon8:c.C1169T:p.S390F	6qC3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.282076235	3	0.09490059	TCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	86368742	PW1766tail	autochthonous	sgMsh2 aCD4/8	86368742	C	A	SNV	Mutect2;Vardict	2	0.051	110	59	1	0.016949153	exonic	Fam136a	synonymous SNV	"Fam136a:NM_001368363:exon3:c.C174A:p.A58A,Fam136a:NM_025591:exon3:c.C240A:p.A80A"	6qD1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.199804	3	0.9997474	CCC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	89337257	PW1766tail	autochthonous	sgMsh2 aCD4/8	89337257	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	78	26	6	0.230769231	exonic	Plxna1	nonsynonymous SNV	Plxna1:NM_008881:exon10:c.A2201G:p.Q734R	6qD1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.826640077	1	0.9956123	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	89714724	PW1766tail	autochthonous	sgMsh2 aCD4/8	89714724	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	455	0	0	NA	exonic	Vmn1r40	synonymous SNV	Vmn1r40:NM_053228:exon1:c.T522C:p.L174L	6qD1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.28599396	3	0.9999464	TTC	synonymous	NA	NA	NA	NA
PW1766T2	chr6	95569623	PW1766tail	autochthonous	sgMsh2 aCD4/8	95569623	C	T	SNV	Mutect2;Vardict	2	0.038	231	101	3	0.02970297	exonic	Suclg2	nonsynonymous SNV	"Suclg2:NM_001326558:exon8:c.G724A:p.A242T,Suclg2:NM_011507:exon8:c.G871A:p.A291T"	6qD2	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.148873568	3	1.03E-09	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	97161455	PW1766tail	autochthonous	sgMsh2 aCD4/8	97161455	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	211	480	31	0.064583333	exonic	Tmf1	nonsynonymous SNV	Tmf1:NM_001081111:exon11:c.C2501T:p.T834M	6qD3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.223310353	3	0.9999968	CGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	97296139	PW1766tail	autochthonous	sgMsh2 aCD4/8	97296139	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	204	60	14	0.233333333	exonic	Frmd4b	nonsynonymous SNV	"Frmd4b:NM_001346637:exon21:c.G2291A:p.R764K,Frmd4b:NM_001346639:exon21:c.G2153A:p.R718K,Frmd4b:NM_145148:exon22:c.G2129A:p.R710K"	6qD3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.493633411	2	2.32E-08	TCT	nonsynonymous	CTT	8	CTTCTTCT	NA
PW1766T2	chr6	98945363	PW1766tail	autochthonous	sgMsh2 aCD4/8	98945363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	434	136	13	0.095588235	exonic	Foxp1	nonsynonymous SNV	"Foxp1:NM_001197322:exon10:c.C1109T:p.A370V,Foxp1:NM_001197321:exon13:c.C1400T:p.A467V,Foxp1:NM_053202:exon14:c.C1496T:p.A499V,Foxp1:NM_001347345:exon15:c.C1496T:p.A499V"	6qD3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.434867529	2	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	108108575	PW1766tail	autochthonous	sgMsh2 aCD4/8	108108575	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	133	103	4	0.038834951	exonic	Sumf1	synonymous SNV	Sumf1:NM_145937:exon9:c.T1020C:p.Y340Y	6qE1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.48579796	2	0.9999893	TAT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	113489779	PW1766tail	autochthonous	sgMsh2 aCD4/8	113489779	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	132	37	5	0.135135135	exonic	Creld1	nonsynonymous SNV	Creld1:NM_133930:exon6:c.T722G:p.L241R	6qE3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.732614666	1	0.9556324	CTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	115823302	PW1766tail	autochthonous	sgMsh2 aCD4/8	115823302	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.206	236	3	3	1	exonic	Efcab12	synonymous SNV	Efcab12:NM_001110506:exon2:c.G759A:p.E253E	6qE3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.80705145	1	0.9999973	GCT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	116493941	PW1766tail	autochthonous	sgMsh2 aCD4/8	116493941	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.058	223	0	0	NA	exonic	Olfr211	synonymous SNV	Olfr211:NM_146912:exon1:c.T331C:p.L111L	6qE3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.227228078	3	0.9999973	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	118176242	PW1766tail	autochthonous	sgMsh2 aCD4/8	118176242	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	99	7	1	0.142857143	exonic	Ret	synonymous SNV	"Ret:NM_001080780:exon7:c.A1464T:p.V488V,Ret:NM_009050:exon7:c.A1464T:p.V488V"	6qF1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.376101647	2	0.9533259	CTA	synonymous	NA	NA	NA	NA
PW1766T2	chr6	118197125	PW1766tail	autochthonous	sgMsh2 aCD4/8	118197125	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.227	21	0	0	NA	exonic	Ret	synonymous SNV	"Ret:NM_001080780:exon1:c.A9G:p.K3K,Ret:NM_009050:exon1:c.A9G:p.K3K"	6qF1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.889323685	1	0.9309116	CTT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	123712951	PW1766tail	autochthonous	sgMsh2 aCD4/8	123712951	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	636	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon3:c.A785T:p.E262V	6qF2	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.446620705	2	1	GAA	nonsynonymous	T	5	TTTTT	NA
PW1766T2	chr6	124625343	PW1766tail	autochthonous	sgMsh2 aCD4/8	124625343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.221	151	0	0	NA	exonic	C1s2	synonymous SNV	C1s2:NM_173864:exon11:c.C1908T:p.D636D	6qF2	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.865817332	1	0.9999961	TGT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	127939115	PW1766tail	autochthonous	sgMsh2 aCD4/8	127939115	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	128	57	0	0	exonic	Tspan11	nonsynonymous SNV	Tspan11:NM_026743:exon5:c.C373A:p.H125N	6qF3	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.681684234	1	0.5157661	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	132600349	PW1766tail	autochthonous	sgMsh2 aCD4/8	132600349	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	61	0	0	NA	exonic	Prp2	stopgain	Prp2:NM_031499:exon2:c.C598T:p.R200X	6qG1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.736532391	1	0.8732409	GCG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr6	135309802	PW1766tail	autochthonous	sgMsh2 aCD4/8	135309802	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	127	147	9	0.06122449	exonic	Pbp2	synonymous SNV	Pbp2:NM_029595:exon1:c.A546G:p.K182K	6qG1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.450538431	2	0.9999325	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	135309997	PW1766tail	autochthonous	sgMsh2 aCD4/8	135309997	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	169	101	8	0.079207921	exonic	Pbp2	synonymous SNV	Pbp2:NM_029595:exon1:c.C351T:p.L117L	6qG1	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.556317019	2	0.9999388	GGA	synonymous	NA	NA	NA	NA
PW1766T2	chr6	140650775	PW1766tail	autochthonous	sgMsh2 aCD4/8	140650775	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	125	228	41	0.179824561	exonic	Aebp2	synonymous SNV	"Aebp2:NM_001005605:exon8:c.T1480C:p.L494L,Aebp2:NM_001309436:exon8:c.T814C:p.L272L,Aebp2:NM_001309437:exon8:c.T814C:p.L272L,Aebp2:NM_009637:exon8:c.T1480C:p.L494L,Aebp2:NM_178803:exon8:c.T814C:p.L272L"	6qG2	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.462291607	2	0.9999637	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr6	141992357	PW1766tail	autochthonous	sgMsh2 aCD4/8	141992357	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	655	0	0	NA	exonic	Gm6614	stopgain	Gm6614:NM_001081318:exon6:c.C835T:p.R279X	6qG2	chr6-3494310-149550203	4	3	1	0.722	2.8285978	NA	1	0.191968549	3	1	CGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	18350952	PW1766tail	autochthonous	sgMsh2 aCD4/8	18350952	G	A	SNV	Mutect2;Vardict	2	0.018	473	0	0	NA	exonic	Psg18	nonsynonymous SNV	"Psg18:NM_001163685:exon2:c.C218T:p.A73V,Psg18:NM_011963:exon3:c.C581T:p.A194V"	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.070519059	3	1	TGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	19357853	PW1766tail	autochthonous	sgMsh2 aCD4/8	19357853	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	32	18	0	0	exonic	Cd3eap	nonsynonymous SNV	Cd3eap:NM_145822:exon3:c.G328T:p.A110S	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.857981881	1	0.9576992	GCC	nonsynonymous	G	5	GGGGG	NA
PW1766T2	chr7	19357899	PW1766tail	autochthonous	sgMsh2 aCD4/8	19357899	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	50	26	1	0.038461538	exonic	Cd3eap	nonsynonymous SNV	Cd3eap:NM_145822:exon3:c.G282T:p.L94F	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.470127058	2	0.9722732	GCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	19382337	PW1766tail	autochthonous	sgMsh2 aCD4/8	19382337	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	51	18	7	0.388888889	exonic	Ercc2	nonsynonymous SNV	"Ercc2:NM_001363981:exon2:c.T64C:p.F22L,Ercc2:NM_007949:exon2:c.T64C:p.F22L"	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	0.999586	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	23865604	PW1766tail	autochthonous	sgMsh2 aCD4/8	23865604	G	-	Deletion	Strelka2;Vardict	2	0.063	270	0	0	NA	exonic	Vmn1r177	frameshift deletion	Vmn1r177:NM_206872:exon1:c.846delC:p.T283Lfs*6	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.246816706	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW1766T2	chr7	25380041	PW1766tail	autochthonous	sgMsh2 aCD4/8	25380041	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.177	16	7	0	0	exonic	Lipe	nonsynonymous SNV	"Lipe:NM_001039507:exon10:c.C2200T:p.R734C,Lipe:NM_010719:exon10:c.C2329T:p.R777C"	7qA3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.693437411	1	0.6711917	CGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	34239760	PW1766tail	autochthonous	sgMsh2 aCD4/8	34239760	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	159	44	14	0.318181818	exonic	Garre1	nonsynonymous SNV	"Garre1:NM_001382305:exon13:c.T2855C:p.V952A,Garre1:NM_172741:exon13:c.T2855C:p.V952A"	7qB1	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	1.14E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	37479435	PW1766tail	autochthonous	sgMsh2 aCD4/8	37479435	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.389	38	0	0	NA	exonic	Zfp536	frameshift deletion	Zfp536:NM_172385:exon6:c.3744delG:p.L1249Cfs*14	7qB2	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1766T2	chr7	41044304	PW1766tail	autochthonous	sgMsh2 aCD4/8	41044304	T	G	SNV	Mutect2;MuSe;Vardict	3	0.094	499	0	0	NA	exonic	Gm4884	nonsynonymous SNV	Gm4884:NM_183166:exon3:c.T1696G:p.F566V	7qB3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.368266196	2	0.9999991	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	44192299	PW1766tail	autochthonous	sgMsh2 aCD4/8	44192299	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	258	0	0	NA	exonic	Klk1b24	nonsynonymous SNV	Klk1b24:NM_010643:exon5:c.A685G:p.T229A	7qB3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	1	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	45635235	PW1766tail	autochthonous	sgMsh2 aCD4/8	45635235	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.076	69	20	0	0	exonic	Rasip1	synonymous SNV	Rasip1:NM_028544:exon8:c.G2025A:p.Q675Q	7qB3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.297747137	3	0.7739412	AGC	synonymous	NA	NA	NA	NA
PW1766T2	chr7	46876581	PW1766tail	autochthonous	sgMsh2 aCD4/8	46876581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	160	0	0	NA	exonic	Ldhc	nonsynonymous SNV	"Ldhc:NM_001368361:exon7:c.T818C:p.V273A,Ldhc:NM_001368362:exon7:c.T818C:p.V273A,Ldhc:NM_013580:exon7:c.T818C:p.V273A"	7qB3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.301664862	3	0.8931573	GTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	62378404	PW1766tail	autochthonous	sgMsh2 aCD4/8	62378404	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	40	0	0	NA	exonic	Magel2	nonsynonymous SNV	Magel2:NM_013779:exon1:c.C1055T:p.P352L	7qC	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.787462822	1	0.9199373	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	81593700	PW1766tail	autochthonous	sgMsh2 aCD4/8	81593700	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	173	18	3	0.166666667	exonic	Whamm	nonsynonymous SNV	Whamm:NM_001004185:exon9:c.A1669G:p.M557V	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.336924392	2	0.8014045	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	85565977	PW1766tail	autochthonous	sgMsh2 aCD4/8	85565977	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	160	0	0	NA	exonic	Vmn2r70	nonsynonymous SNV	Vmn2r70:NM_001384914:exon2:c.G348T:p.L116F	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.720861489	1	0.9378947	TCA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	85749222	PW1766tail	autochthonous	sgMsh2 aCD4/8	85749222	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	136	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon5:c.A1534G:p.I512V	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.317335764	3	0.6371654	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	85750805	PW1766tail	autochthonous	sgMsh2 aCD4/8	85750805	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	368	0	0	NA	exonic	Vmn2r72	synonymous SNV	Vmn2r72:NM_001384915:exon3:c.T1020C:p.S340S	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.101860863	3	1	CAC	synonymous	NA	NA	NA	NA
PW1766T2	chr7	86811847	PW1766tail	autochthonous	sgMsh2 aCD4/8	86811847	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	359	0	0	NA	exonic	Vmn2r77	nonsynonymous SNV	Vmn2r77:NM_001105188:exon6:c.C2380T:p.P794S	7qD3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.626836078	2	0.9999567	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	90240304	PW1766tail	autochthonous	sgMsh2 aCD4/8	90240304	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.266	121	0	0	NA	exonic	Ccdc83	frameshift deletion	"Ccdc83:NM_029256:exon6:c.545delA:p.K182Rfs*7,Ccdc83:NM_183293:exon6:c.545delA:p.K182Rfs*7"	7qE1	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1766T2	chr7	101832279	PW1766tail	autochthonous	sgMsh2 aCD4/8	101832279	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	88	64	1	0.015625	exonic	Inppl1	nonsynonymous SNV	"Inppl1:NM_001122739:exon7:c.T695C:p.L232P,Inppl1:NM_010567:exon7:c.T695C:p.L232P"	7qE2	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.289911686	3	0.8710853	CAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	103881753	PW1766tail	autochthonous	sgMsh2 aCD4/8	103881753	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	379	0	0	NA	exonic	Olfr66	nonsynonymous SNV	Olfr66:NM_013618:exon1:c.G489T:p.W163C	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.32125349	3	0.5491631	ACC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	103906693	PW1766tail	autochthonous	sgMsh2 aCD4/8	103906693	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	295	0	0	NA	exonic	Olfr65	nonsynonymous SNV	Olfr65:NM_013616:exon1:c.G253A:p.V85I	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	1	TGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	104068245	PW1766tail	autochthonous	sgMsh2 aCD4/8	104068245	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	162	0	0	NA	exonic	Olfr644	nonsynonymous SNV	Olfr644:NM_147121:exon1:c.T785C:p.M262T	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.995102273	1	1.13E-09	CAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	104106361	PW1766tail	autochthonous	sgMsh2 aCD4/8	104106361	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	96	0	0	NA	exonic	Olfr646	synonymous SNV	Olfr646:NM_147056:exon1:c.C81T:p.P27P	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.603329725	2	0.9590403	CCT	synonymous	NA	NA	NA	NA
PW1766T2	chr7	104106429	PW1766tail	autochthonous	sgMsh2 aCD4/8	104106429	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	130	0	0	NA	exonic	Olfr646	nonsynonymous SNV	Olfr646:NM_147056:exon1:c.G149A:p.S50N	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.56415247	2	0.9989204	AGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	106956875	PW1766tail	autochthonous	sgMsh2 aCD4/8	106956875	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	167	0	0	NA	exonic	Olfr6	stopgain	Olfr6:NM_206897:exon1:c.G60A:p.W20X	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.254652156	3	0.9990203	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	108103974	PW1766tail	autochthonous	sgMsh2 aCD4/8	108103974	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	499	0	0	NA	exonic	Olfr483	nonsynonymous SNV	Olfr483:NM_146735:exon1:c.T664C:p.Y222H	7qE3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.152791294	3	1	CTA	nonsynonymous	TTCCTA	12	TTCCTATTCCTA	NA
PW1766T2	chr7	112411422	PW1766tail	autochthonous	sgMsh2 aCD4/8	112411422	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	157	1	0	0	exonic	Micalcl	nonsynonymous SNV	"Micalcl:NM_001381862:exon9:c.G1817T:p.S606I,Micalcl:NM_027587:exon9:c.G1817T:p.S606I"	7qF1	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.438785254	2	0.9999808	AGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	119638187	PW1766tail	autochthonous	sgMsh2 aCD4/8	119638187	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	110	0	0	NA	exonic	Acsm1	nonsynonymous SNV	Acsm1:NM_054094:exon5:c.G722T:p.R241L	7qF2	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.622918352	2	0.9400289	CGG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	125910223	PW1766tail	autochthonous	sgMsh2 aCD4/8	125910223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	87	0	0	NA	exonic	Gsg1l	synonymous SNV	Gsg1l:NM_001101488:exon5:c.A741G:p.Q247Q	7qF3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999971	CTT	synonymous	NA	NA	NA	NA
PW1766T2	chr7	127215744	PW1766tail	autochthonous	sgMsh2 aCD4/8	127215744	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	124	5	4	0.8	exonic	Septin1	synonymous SNV	Septin1:NM_017461:exon8:c.T672A:p.P224P	7qF3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.391772548	2	0.9934071	AAG	synonymous	NA	NA	NA	NA
PW1766T2	chr7	127558026	PW1766tail	autochthonous	sgMsh2 aCD4/8	127558026	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	66	81	16	0.197530864	exonic	Srcap	nonsynonymous SNV	Srcap:NM_001304266:exon34:c.T7073A:p.L2358Q	7qF3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.783545097	1	0.9684543	CTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	127602597	PW1766tail	autochthonous	sgMsh2 aCD4/8	127602597	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	84	86	34	0.395348837	exonic	Rnf40	nonsynonymous SNV	"Rnf40:NM_001360883:exon19:c.A1961G:p.N654S,Rnf40:NM_172281:exon20:c.A2960G:p.N987S"	7qF3	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999956	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	141812353	PW1766tail	autochthonous	sgMsh2 aCD4/8	141812353	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	187	24	0	0	exonic	Muc5ac	nonsynonymous SNV	Muc5ac:NM_010844:exon34:c.T8354C:p.I2785T	7qF5	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.137120392	3	1.80E-09	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr7	144284992	PW1766tail	autochthonous	sgMsh2 aCD4/8	144284992	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	107	0	0	NA	exonic	Shank2	synonymous SNV	Shank2:NM_001081370:exon1:c.A24T:p.G8G	7qF5	chr7-3489103-145323643	2	1	1	0.722	2.8285978	NA	1	0.211557176	3	0.9993306	GAG	synonymous	NA	NA	NA	NA
PW1766T2	chr8	5091743	PW1766tail	autochthonous	sgMsh2 aCD4/8	5091743	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	114	0	0	NA	exonic	Slc10a2	nonsynonymous SNV	Slc10a2:NM_011388:exon4:c.A640G:p.I214V	8qA1.1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.368266196	2	0.9515321	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	31160428	PW1766tail	autochthonous	sgMsh2 aCD4/8	31160428	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	112	341	7	0.020527859	exonic	Mak16	synonymous SNV	Mak16:NM_026453:exon10:c.A852G:p.E284E	8qA3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.188050823	3	0.9999011	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chr8	40899055	PW1766tail	autochthonous	sgMsh2 aCD4/8	40899055	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	180	24	2	0.083333333	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon2:c.A103G:p.T35A,Slc7a2:NM_007514:exon2:c.A103G:p.T35A"	8qA4	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.262487607	3	0.9986378	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	45036290	PW1766tail	autochthonous	sgMsh2 aCD4/8	45036290	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	201	56	11	0.196428571	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon17:c.A10528G:p.K3510E	8qB1.1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.282076235	3	0.993086	GAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	60656637	PW1766tail	autochthonous	sgMsh2 aCD4/8	60656637	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	146	2	0	0	exonic	Mfap3l	nonsynonymous SNV	"Mfap3l:NM_001177881:exon2:c.G46A:p.V16M,Mfap3l:NM_001177882:exon2:c.G46A:p.V16M,Mfap3l:NM_027756:exon2:c.G46A:p.V16M"	8qB3.1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.203721725	3	0.9999741	TGT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	66512664	PW1766tail	autochthonous	sgMsh2 aCD4/8	66512664	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	253	0	0	NA	exonic	Tktl2	synonymous SNV	"Tktl2:NM_001271574:exon1:c.G873C:p.P291P,Tktl2:NM_028927:exon1:c.G873C:p.P291P"	8qB3.1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.168462196	3	1.06E-09	CGA	synonymous	NA	NA	NA	NA
PW1766T2	chr8	70318240	PW1766tail	autochthonous	sgMsh2 aCD4/8	70318240	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.315	117	2	0	0	exonic	Cers1	nonsynonymous SNV	Cers1:NM_138647:exon2:c.C299T:p.P100L	8qB3.3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	1	4.68E-08	CCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	70532734	PW1766tail	autochthonous	sgMsh2 aCD4/8	70532734	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	87	469	42	0.089552239	exonic	Fkbp8	synonymous SNV	"Fkbp8:NM_001111066:exon6:c.G900A:p.L300L,Fkbp8:NM_001199631:exon6:c.G900A:p.L300L,Fkbp8:NM_010223:exon6:c.G897A:p.L299L"	8qB3.3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.509304313	2	0.9983882	TGT	synonymous	NA	NA	NA	NA
PW1766T2	chr8	79274217	PW1766tail	autochthonous	sgMsh2 aCD4/8	79274217	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	235	16	6	0.375	exonic	Mmaa	nonsynonymous SNV	"Mmaa:NM_133823:exon4:c.A611G:p.Y204C,Mmaa:NM_001363471:exon5:c.A125G:p.Y42C,Mmaa:NM_001363470:exon6:c.A611G:p.Y204C,Mmaa:NM_001363472:exon6:c.A125G:p.Y42C"	8qC1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.955925018	1	1.00E-09	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	81884212	PW1766tail	autochthonous	sgMsh2 aCD4/8	81884212	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	210	62	2	0.032258065	exonic	Inpp4b	nonsynonymous SNV	"Inpp4b:NM_001297593:exon8:c.G400A:p.D134N,Inpp4b:NM_001024617:exon9:c.G532A:p.D178N,Inpp4b:NM_001297591:exon9:c.G583A:p.D195N,Inpp4b:NM_001297596:exon9:c.G583A:p.D195N"	8qC2	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.129284941	3	1.02E-09	CGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	88591610	PW1766tail	autochthonous	sgMsh2 aCD4/8	88591610	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	63	68	0	0	exonic	Nkd1	nonsynonymous SNV	"Nkd1:NM_001163660:exon8:c.C562T:p.P188S,Nkd1:NM_027280:exon10:c.C874T:p.P292S"	8qC3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.854064156	1	0.9950525	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	94032452	PW1766tail	autochthonous	sgMsh2 aCD4/8	94032452	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	143	5	4	0.8	exonic	Nudt21	nonsynonymous SNV	Nudt21:NM_026623:exon2:c.A167C:p.K56T	8qC5	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.932418665	1	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	104215024	PW1766tail	autochthonous	sgMsh2 aCD4/8	104215025	AC	-	Deletion	Strelka2;Vardict	2	0.1772	79	0	0	NA	exonic	Bean1	frameshift deletion	"Bean1:NM_001141924:exon4:c.288_289del:p.H99Qfs*3,Bean1:NM_001141925:exon4:c.105_106del:p.H38Qfs*3,Bean1:NM_001141922:exon6:c.501_502del:p.H170Qfs*3"	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.694220956	NA	NA	GAC	frameshift	AC	11	ACACACACACA	-2
PW1766T2	chr8	104952547	PW1766tail	autochthonous	sgMsh2 aCD4/8	104952547	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	259	0	0	NA	exonic	Ces2f	nonsynonymous SNV	"Ces2f:NM_001357269:exon5:c.C602T:p.A201V,Ces2f:NM_001079865:exon7:c.C995T:p.A332V"	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.199804	3	5.87E-09	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	105840619	PW1766tail	autochthonous	sgMsh2 aCD4/8	105840619	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	180	0	0	NA	exonic	Tsnaxip1	nonsynonymous SNV	Tsnaxip1:NM_024445:exon7:c.C716A:p.A239D	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	1	1.01E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	106104115	PW1766tail	autochthonous	sgMsh2 aCD4/8	106104115	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	187	77	5	0.064935065	exonic	Nfatc3	frameshift deletion	"Nfatc3:NM_001368796:exon8:c.2065delA:p.S691Afs*11,Nfatc3:NM_001368797:exon8:c.2041delA:p.S683Afs*11,Nfatc3:NM_010901:exon8:c.2065delA:p.S691Afs*11"	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.340842117	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1766T2	chr8	106874515	PW1766tail	autochthonous	sgMsh2 aCD4/8	106874515	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	147	7	1	0.142857143	exonic	Has3	nonsynonymous SNV	"Has3:NM_001331048:exon2:c.A608T:p.K203M,Has3:NM_008217:exon2:c.A608T:p.K203M"	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.857981881	1	0.9999911	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	106894678	PW1766tail	autochthonous	sgMsh2 aCD4/8	106894678	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	308	239	15	0.062761506	exonic	Utp4	nonsynonymous SNV	"Utp4:NM_001358982:exon2:c.A86G:p.N29S,Utp4:NM_011574:exon2:c.A86G:p.N29S"	8qD3	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.195886274	3	1.07E-09	AAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	110746907	PW1766tail	autochthonous	sgMsh2 aCD4/8	110746907	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	95	21	6	0.285714286	exonic	Il34	nonsynonymous SNV	Il34:NM_029646:exon6:c.T431C:p.V144A	8qE1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.89324141	1	0.999908	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	117046121	PW1766tail	autochthonous	sgMsh2 aCD4/8	117046121	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.287	151	0	0	NA	exonic	Pkd1l2	synonymous SNV	Pkd1l2:NM_029686:exon19:c.T3163C:p.L1055L	8qE1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	1	1.42E-09	AAT	synonymous	NA	NA	NA	NA
PW1766T2	chr8	122468292	PW1766tail	autochthonous	sgMsh2 aCD4/8	122468292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	70	73	20	0.273972603	exonic	Rnf166	nonsynonymous SNV	"Rnf166:NM_001033142:exon4:c.A488G:p.Q163R,Rnf166:NM_001368370:exon4:c.A161G:p.Q54R"	8qE1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.611165176	2	0.8640072	CTG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	122482953	PW1766tail	autochthonous	sgMsh2 aCD4/8	122482953	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	73	134	38	0.28358209	exonic	Piezo1	nonsynonymous SNV	"Piezo1:NM_001037298:exon48:c.A7010T:p.E2337V,Piezo1:NM_001357349:exon48:c.A7013T:p.E2338V"	8qE1	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	1	0.9999801	CTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	124231596	PW1766tail	autochthonous	sgMsh2 aCD4/8	124231596	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.353	18	17	5	0.294117647	exonic	Galnt2	nonsynonymous SNV	Galnt2:NM_139272:exon1:c.T70C:p.Y24H	8qE2	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	1	1	0.9620873	GTA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr8	124305653	PW1766tail	autochthonous	sgMsh2 aCD4/8	124305653	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	159	68	5	0.073529412	exonic	Galnt2	nonsynonymous SNV	Galnt2:NM_139272:exon3:c.A356G:p.D119G	8qE2	chr8-3439317-128493272	3	2	1	0.722	2.8285978	NA	1	0.195886274	3	0.9999951	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	7176795	PW1766tail	autochthonous	sgMsh2 aCD4/8	7176795	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	53	3	0	0	exonic	Dync2h1	nonsynonymous SNV	"Dync2h1:NM_001364519:exon1:c.C163T:p.R55W,Dync2h1:NM_029851:exon1:c.C163T:p.R55W"	9qA1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.313418039	3	9.10E-05	CGC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	15863271	PW1766tail	autochthonous	sgMsh2 aCD4/8	15863271	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	91	0	0	NA	exonic	Mtnr1b	nonsynonymous SNV	Mtnr1b:NM_145712:exon2:c.T491C:p.V164A	9qA2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.52889294	2	0.9975156	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	19497115	PW1766tail	autochthonous	sgMsh2 aCD4/8	19497115	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.284	240	0	0	NA	exonic	Olfr851	synonymous SNV	Olfr851:NM_146905:exon1:c.C366A:p.R122R	9qA2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	GCT	synonymous	NA	NA	NA	NA
PW1766T2	chr9	21230732	PW1766tail	autochthonous	sgMsh2 aCD4/8	21230732	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	113	172	22	0.127906977	exonic	Keap1	synonymous SNV	"Keap1:NM_016679:exon5:c.G1845A:p.K615K,Keap1:NM_001110305:exon6:c.G1845A:p.K615K,Keap1:NM_001110306:exon6:c.G1845A:p.K615K,Keap1:NM_001110307:exon6:c.G1845A:p.K615K"	9qA3	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.289911686	3	0.9150762	GCT	synonymous	NA	NA	NA	NA
PW1766T2	chr9	32245175	PW1766tail	autochthonous	sgMsh2 aCD4/8	32245175	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	218	2	0	0	exonic	Arhgap32	nonsynonymous SNV	"Arhgap32:NM_177379:exon3:c.A130G:p.T44A,Arhgap32:NM_001195632:exon12:c.A1177G:p.T393A,Arhgap32:NM_001370957:exon12:c.A1057G:p.T353A,Arhgap32:NM_001370958:exon13:c.A1099G:p.T367A"	9qA4	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	37539386	PW1766tail	autochthonous	sgMsh2 aCD4/8	37539386	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	58	18	1	0.055555556	exonic	Vsig2	synonymous SNV	Vsig2:NM_020518:exon1:c.C12T:p.P4P	9qA4	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.293829411	3	0.7709788	CCC	synonymous	TGGCC	10	TGGCCTGGCC	NA
PW1766T2	chr9	38499573	PW1766tail	autochthonous	sgMsh2 aCD4/8	38499573	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.349	85	0	0	NA	exonic	Olfr907	frameshift deletion	Olfr907:NM_146805:exon1:c.903delA:p.T304Lfs*1	9qA5.1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW1766T2	chr9	39144138	PW1766tail	autochthonous	sgMsh2 aCD4/8	39144138	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	155	0	0	NA	exonic	Olfr242;Olfr27	nonsynonymous SNV	"Olfr242:NM_010974:exon1:c.T37C:p.F13L,Olfr27:NM_146829:exon2:c.T37C:p.F13L"	9qA5.1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.282076235	3	0.9799996	CTT	nonsynonymous	TTC	8	TTCTTCTT	NA
PW1766T2	chr9	39573253	PW1766tail	autochthonous	sgMsh2 aCD4/8	39573253	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	184	0	0	NA	exonic	Olfr959	nonsynonymous SNV	Olfr959:NM_146508:exon1:c.G5T:p.R2M	9qA5.1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.160626745	3	1.60E-08	CCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	44507622	PW1766tail	autochthonous	sgMsh2 aCD4/8	44507622	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	110	25	4	0.16	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.C2756T:p.S919F,Bcl9l:NM_030256:exon7:c.C2867T:p.S956F"	9qA5.2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.438785254	2	0.9994563	TCC	nonsynonymous	CTCC	9	CTCCCTCCC	NA
PW1766T2	chr9	49545646	PW1766tail	autochthonous	sgMsh2 aCD4/8	49545646	A	G	SNV	Mutect2;Vardict	2	0.04	105	5	0	0	exonic	Ncam1	nonsynonymous SNV	"Ncam1:NM_001081445:exon10:c.T1351C:p.Y451H,Ncam1:NM_001113204:exon10:c.T1351C:p.Y451H,Ncam1:NM_001311065:exon10:c.T1351C:p.Y451H,Ncam1:NM_010875:exon10:c.T1351C:p.Y451H"	9qA5.3	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.156709019	3	0.9999761	TAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	55545492	PW1766tail	autochthonous	sgMsh2 aCD4/8	55545492	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	58	0	0	NA	exonic	Isl2	nonsynonymous SNV	Isl2:NM_027397:exon6:c.C1033T:p.L345F	9qB	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.88540596	1	0.996863	GCT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	59908230	PW1766tail	autochthonous	sgMsh2 aCD4/8	59908230	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	333	30	0	0	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon38:c.A6731G:p.Y2244C	9qB	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.223310353	3	3.46E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	59924963	PW1766tail	autochthonous	sgMsh2 aCD4/8	59924963	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	74	18	4	0.222222222	exonic	Myo9a	nonsynonymous SNV	Myo9a:NM_173018:exon44:c.A7828G:p.T2610A	9qB	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.517139764	2	0.99392	AAC	nonsynonymous	GAAA	8	GAAAGAAA	NA
PW1766T2	chr9	83395749	PW1766tail	autochthonous	sgMsh2 aCD4/8	83395749	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	112	7	1	0.142857143	exonic	Lca5	nonsynonymous SNV	Lca5:NM_027448:exon8:c.T1541C:p.L514S	9qE2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999999	TAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	87705665	PW1766tail	autochthonous	sgMsh2 aCD4/8	87705665	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	159	0	0	NA	exonic	Tbx18	synonymous SNV	Tbx18:NM_023814:exon8:c.G1398A:p.V466V	9qE3.1	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.188050823	3	0.9999977	TCA	synonymous	NA	NA	NA	NA
PW1766T2	chr9	99281030	PW1766tail	autochthonous	sgMsh2 aCD4/8	99281030	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	97	20	8	0.4	exonic	Cep70	nonsynonymous SNV	Cep70:NM_023873:exon11:c.C929T:p.P310L	9qE3.3	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	0.881488234	1	0.9998715	CCC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	109056427	PW1766tail	autochthonous	sgMsh2 aCD4/8	109056427	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	66	208	64	0.307692308	exonic	Shisa5	nonsynonymous SNV	"Shisa5:NM_001357933:exon3:c.G379A:p.A127T,Shisa5:NM_001357934:exon3:c.G307A:p.A103T,Shisa5:NM_026381:exon3:c.G262A:p.A88T,Shisa5:NM_001357935:exon4:c.G265A:p.A89T,Shisa5:NM_001357936:exon4:c.G265A:p.A89T,Shisa5:NM_001357937:exon4:c.G265A:p.A89T,Shisa5:NM_001357939:exon4:c.G265A:p.A89T,Shisa5:NM_001357940:exon4:c.G265A:p.A89T,Shisa5:NM_001357941:exon4:c.G265A:p.A89T,Shisa5:NM_001284332:exon5:c.G574A:p.A192T,Shisa5:NM_001357932:exon5:c.G367A:p.A123T,Shisa5:NM_025858:exon5:c.G571A:p.A191T"	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999477	AGC	nonsynonymous	CAG	8	CAGCAGCA	NA
PW1766T2	chr9	109058021	PW1766tail	autochthonous	sgMsh2 aCD4/8	109058021	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	72	17	10	0.588235294	exonic	Trex1	nonsynonymous SNV	"Trex1:NM_001012236:exon2:c.A901G:p.I301V,Trex1:NM_011637:exon2:c.A901G:p.I301V"	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	0.9999772	ATT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	109181456	PW1766tail	autochthonous	sgMsh2 aCD4/8	109181456	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	235	0	0	NA	exonic	Fbxw13	synonymous SNV	Fbxw13:NM_177598:exon8:c.A1113G:p.K371K	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	1.00E-09	CTT	synonymous	NA	NA	NA	NA
PW1766T2	chr9	109723725	PW1766tail	autochthonous	sgMsh2 aCD4/8	109723725	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	262	0	0	NA	exonic	Fbxw26	nonsynonymous SNV	Fbxw26:NM_198674:exon7:c.T980C:p.V327A	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	1	1	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chr9	110206053	PW1766tail	autochthonous	sgMsh2 aCD4/8	110206053	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.296	107	113	12	0.10619469	exonic	Smarcc1	frameshift deletion	Smarcc1:NM_009211:exon24:c.2543delA:p.S849Afs*46	9qF2	chr9-3342997-124127224	2	1	1	0.722	2.8285978	NA	1	1	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1766T2	chrX	7617617	PW1766tail	autochthonous	sgMsh2 aCD4/8	7617617	A	T	SNV	Mutect2;Vardict	2	0.031	176	0	0	NA	exonic	Cacna1f	nonsynonymous SNV	Cacna1f:NM_019582:exon17:c.A2278T:p.N760Y	XqA1.1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	TAA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	7824056	PW1766tail	autochthonous	sgMsh2 aCD4/8	7824056	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	115	2	0	0	exonic	Kcnd1	nonsynonymous SNV	Kcnd1:NM_008423:exon1:c.G214A:p.E72K	XqA1.1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	8546745	PW1766tail	autochthonous	sgMsh2 aCD4/8	8546745	T	C	SNV	Mutect2;Vardict	2	0.03	566	0	0	NA	exonic	Ssxb6	nonsynonymous SNV	Ssxb6:NM_001205108:exon4:c.A278G:p.E93G	XqA1.1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	TTC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	20645593	PW1766tail	autochthonous	sgMsh2 aCD4/8	20645593	T	G	SNV	Mutect2;Vardict	2	0.052	130	8	0	0	exonic	Rbm10	nonsynonymous SNV	"Rbm10:NM_001358905:exon8:c.T575G:p.I192S,Rbm10:NM_001167776:exon9:c.T827G:p.I276S,Rbm10:NM_001358904:exon9:c.T827G:p.I276S,Rbm10:NM_001167775:exon10:c.T1058G:p.I353S,Rbm10:NM_001358903:exon10:c.T1058G:p.I353S,Rbm10:NM_145627:exon10:c.T1058G:p.I353S"	XqA1.3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	23220680	PW1766tail	autochthonous	sgMsh2 aCD4/8	23220680	A	G	SNV	Mutect2;Vardict	2	0.025	208	9	0	0	exonic	Klhl13	synonymous SNV	"Klhl13:NM_001290476:exon7:c.T1632C:p.Y544Y,Klhl13:NM_001310466:exon7:c.T1608C:p.Y536Y,Klhl13:NM_001381894:exon8:c.T1650C:p.Y550Y,Klhl13:NM_001381896:exon8:c.T1602C:p.Y534Y,Klhl13:NM_001381893:exon9:c.T1650C:p.Y550Y,Klhl13:NM_026167:exon9:c.T1602C:p.Y534Y,Klhl13:NM_001381891:exon10:c.T1668C:p.Y556Y,Klhl13:NM_001381892:exon10:c.T1668C:p.Y556Y,Klhl13:NM_001381895:exon10:c.T1602C:p.Y534Y"	XqA2	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	CAT	synonymous	CAT	9	CATCATCAT	NA
PW1766T2	chrX	61184508	PW1766tail	autochthonous	sgMsh2 aCD4/8	61184508	A	C	SNV	Mutect2;Vardict	2	0.031	427	0	0	NA	exonic	Cdr1	nonsynonymous SNV	Cdr1:NM_001166658:exon1:c.T1051G:p.F351V	XqA6	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	73859433	PW1766tail	autochthonous	sgMsh2 aCD4/8	73859433	G	A	SNV	Mutect2;Vardict	2	0.057	72	4	0	0	exonic	L1cam	synonymous SNV	"L1cam:NM_001374694:exon18:c.C2283T:p.T761T,L1cam:NM_008478:exon19:c.C2298T:p.T766T"	XqA7.3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	CGG	synonymous	NA	NA	NA	NA
PW1766T2	chrX	83908446	PW1766tail	autochthonous	sgMsh2 aCD4/8	83908446	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	158	0	0	NA	exonic	Dmd	nonsynonymous SNV	Dmd:NM_007868:exon37:c.A5226T:p.K1742N	XqC1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	100916594	PW1766tail	autochthonous	sgMsh2 aCD4/8	100916594	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	88	0	0	NA	exonic	Tex11	nonsynonymous SNV	"Tex11:NM_001167997:exon18:c.C1543T:p.R515C,Tex11:NM_031384:exon18:c.C1543T:p.R515C"	XqC3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	CGA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	106930942	PW1766tail	autochthonous	sgMsh2 aCD4/8	106930942	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.218	247	3	0	0	exonic	Lpar4	nonsynonymous SNV	Lpar4:NM_175271:exon3:c.A731G:p.K244R	XqD	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	AAA	nonsynonymous	A	9	AAAAAAAAA	NA
PW1766T2	chrX	107293111	PW1766tail	autochthonous	sgMsh2 aCD4/8	107293111	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	244	0	0	NA	exonic	Gpr174	nonsynonymous SNV	"Gpr174:NM_001177782:exon3:c.T528G:p.N176K,Gpr174:NM_001033251:exon5:c.T528G:p.N176K,Gpr174:NM_001177781:exon5:c.T528G:p.N176K,Gpr174:NM_001358747:exon5:c.T528G:p.N176K"	XqD	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	114474648	PW1766tail	autochthonous	sgMsh2 aCD4/8	114474648	G	A	SNV	Mutect2;Vardict	2	0.033	130	0	0	NA	exonic	Klhl4	synonymous SNV	"Klhl4:NM_001290477:exon1:c.G225A:p.T75T,Klhl4:NM_001290478:exon1:c.G225A:p.T75T,Klhl4:NM_172781:exon1:c.G225A:p.T75T"	XqE1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	CGC	synonymous	NA	NA	NA	NA
PW1766T2	chrX	116477867	PW1766tail	autochthonous	sgMsh2 aCD4/8	116477867	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	175	0	0	NA	exonic	Cpxcr1	synonymous SNV	Cpxcr1:NM_001033471:exon3:c.T474C:p.C158C	XqE1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
PW1766T2	chrX	124131244	PW1766tail	autochthonous	sgMsh2 aCD4/8	124131244	-	A	Insertion	Mutect2;Vardict	2	0.04	201	0	0	NA	exonic	Vmn2r121	frameshift insertion	Vmn2r121:NM_001100616:exon4:c.1388dupT:p.I464Hfs*31	XqE3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	TGA	frameshift	NA	NA	NA	1
PW1766T2	chrX	126815191	PW1766tail	autochthonous	sgMsh2 aCD4/8	126815191	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.047	218	0	0	NA	exonic	4932411N23Rik	frameshift deletion	4932411N23Rik:NM_177705:exon3:c.290delT:p.F97Sfs*8	XqE3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1766T2	chrX	127062687	PW1766tail	autochthonous	sgMsh2 aCD4/8	127062687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	204	0	0	NA	exonic	Gm382	nonsynonymous SNV	Gm382:NM_001033241:exon3:c.A2494G:p.T832A	XqE3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	129942924	PW1766tail	autochthonous	sgMsh2 aCD4/8	129942924	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	111	7	0	0	exonic	Diaph2	nonsynonymous SNV	Diaph2:NM_172493:exon8:c.A767T:p.D256V	XqE3	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	GAC	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	135657587	PW1766tail	autochthonous	sgMsh2 aCD4/8	135657587	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.243	87	0	0	NA	exonic	Tcp11x2	nonsynonymous SNV	Tcp11x2:NM_027952:exon9:c.A1129G:p.M377V	XqF1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	135799306	PW1766tail	autochthonous	sgMsh2 aCD4/8	135799306	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	127	5	0	0	exonic	Gprasp1	nonsynonymous SNV	"Gprasp1:NM_001004359:exon10:c.A247G:p.I83V,Gprasp1:NM_001005385:exon10:c.A247G:p.I83V,Gprasp1:NM_026081:exon11:c.A247G:p.I83V"	XqF1	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	TAT	nonsynonymous	NA	NA	NA	NA
PW1766T2	chrX	143104290	PW1766tail	autochthonous	sgMsh2 aCD4/8	143104290	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	166	0	0	NA	exonic	Rtl9	nonsynonymous SNV	Rtl9:NM_001040434:exon2:c.A4097T:p.N1366I	XqF2	NA	NA	NA	NA	0.722	2.8285978	NA	NA	NA	NA	NA	AAC	nonsynonymous	ACAA	8	ACAAACAA	NA
PW1826T10	chr1	58540143	PW1826tail	autochthonous	sgMsh2 aCD4/8	58540143	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	130	22	1	0.045454545	exonic	Fam126b	nonsynonymous SNV	"Fam126b:NM_001310598:exon9:c.A734T:p.Y245F,Fam126b:NM_001310599:exon9:c.A734T:p.Y245F,Fam126b:NM_172513:exon9:c.A734T:p.Y245F"	1qC1.3	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.77362335	1	0.9999271	GTA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr1	79778093	PW1826tail	autochthonous	sgMsh2 aCD4/8	79778093	C	-	Deletion	Mutect2;Vardict	2	0.033	163	137	0	0	exonic	Mrpl44	frameshift deletion	Mrpl44:NM_001081210:exon2:c.415delC:p.Q139Sfs*17	1qC4	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.214534206	NA	NA	ACA	frameshift	NA	NA	NA	-1
PW1826T10	chr1	118543211	PW1826tail	autochthonous	sgMsh2 aCD4/8	118543211	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	128	9	1	0.111111111	exonic	Clasp1	nonsynonymous SNV	"Clasp1:NM_001293301:exon23:c.G2393A:p.G798D,Clasp1:NM_001359340:exon24:c.G2420A:p.G807D,Clasp1:NM_029709:exon24:c.G2417A:p.G806D,Clasp1:NM_001359338:exon25:c.G2444A:p.G815D,Clasp1:NM_001359341:exon25:c.G2528A:p.G843D,Clasp1:NM_001359342:exon25:c.G2525A:p.G842D,Clasp1:NM_001359346:exon25:c.G2444A:p.G815D,Clasp1:NM_001359330:exon26:c.G2552A:p.G851D,Clasp1:NM_001359336:exon26:c.G2468A:p.G823D,Clasp1:NM_001359339:exon26:c.G2552A:p.G851D,Clasp1:NM_001359343:exon26:c.G2507A:p.G836D,Clasp1:NM_001359345:exon26:c.G2468A:p.G823D,Clasp1:NM_001293300:exon27:c.G2576A:p.G859D,Clasp1:NM_001359329:exon27:c.G2615A:p.G872D,Clasp1:NM_001359334:exon27:c.G2615A:p.G872D,Clasp1:NM_001359335:exon27:c.G2615A:p.G872D,Clasp1:NM_001359337:exon27:c.G2576A:p.G859D,Clasp1:NM_001359347:exon27:c.G1346A:p.G449D,Clasp1:NM_001359328:exon28:c.G2639A:p.G880D,Clasp1:NM_001359331:exon28:c.G2639A:p.G880D"	1qE2.3	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.552588107	2	0.9914621	GGT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr1	132991887	PW1826tail	autochthonous	sgMsh2 aCD4/8	132991890	TGTT	-	Deletion	Strelka2;Vardict	2	0.0886	158	84	0	0	exonic	Mdm4	frameshift deletion	"Mdm4:NM_001302801:exon11:c.1239_1242del:p.T414Ifs*19,Mdm4:NM_001302802:exon11:c.1239_1242del:p.T414Ifs*19,Mdm4:NM_001302803:exon11:c.1236_1239del:p.T413Ifs*19,Mdm4:NM_001302804:exon11:c.855_858del:p.T286Ifs*19,Mdm4:NM_008575:exon12:c.1236_1239del:p.T413Ifs*19"	1qE4	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.575991839	NA	NA	CTG	frameshift	TGTT	8	TGTTTGTT	-4
PW1826T10	chr1	173332651	PW1826tail	autochthonous	sgMsh2 aCD4/8	173332651	T	C	SNV	Mutect2;Vardict	2	0.055	75	0	0	NA	exonic	Ackr1	synonymous SNV	Ackr1:NM_010045:exon2:c.A300G:p.L100L	1qH3	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.35755701	2	0.9587952	CTA	synonymous	NA	NA	NA	NA
PW1826T10	chr1	188443277	PW1826tail	autochthonous	sgMsh2 aCD4/8	188443277	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	156	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon16:c.C3571T:p.P1191S	1qH6	chr1-4839315-195062457	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.416066339	2	0.999931	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr10	78984695	PW1826tail	autochthonous	sgMsh2 aCD4/8	78984695	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	70	0	0	NA	exonic	Olfr1352	nonsynonymous SNV	Olfr1352:NM_147071:exon2:c.A904G:p.K302E	10qC1	chr10-5234707-130453386	4	3	1	0.843	5.480373814	RARE KARYOTYPE	1	0.58509329	2	0.8208907	GAA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr11	70437362	PW1826tail	autochthonous	sgMsh2 aCD4/8	70437362	A	-	Deletion	Mutect2;Vardict	2	0.095	56	34	0	0	exonic	Arrb2	frameshift deletion	"Arrb2:NM_001271358:exon7:c.470delA:p.S159Vfs*42,Arrb2:NM_001271359:exon7:c.470delA:p.S159Vfs*42,Arrb2:NM_001271360:exon7:c.470delA:p.S159Vfs*42,Arrb2:NM_145429:exon7:c.470delA:p.S159Vfs*42"	11qB3	chr11-69590981-121956809	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.617598473	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1826T10	chr12	88177426	PW1826tail	autochthonous	sgMsh2 aCD4/8	88177426	T	C	SNV	Mutect2;Vardict	2	0.039	174	0	0	NA	exonic	Pramel51	nonsynonymous SNV	"Pramel51:NM_001324471:exon2:c.A55G:p.R19G,Pramel51:NM_001105254:exon3:c.A640G:p.R214G"	12qD2	chr12-3252726-119465464	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.253540426	3	0.9240957	CTC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr12	111103759	PW1826tail	autochthonous	sgMsh2 aCD4/8	111103759	C	T	SNV	Mutect2;Vardict	2	0.1	42	37	3	0.081081081	exonic	Rcor1	nonsynonymous SNV	Rcor1:NM_198023:exon8:c.C989T:p.T330M	12qF1	chr12-3252726-119465464	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.650103655	1	0.5982088	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr13	22041106	PW1826tail	autochthonous	sgMsh2 aCD4/8	22041106	T	C	SNV	Mutect2;Vardict	2	0.046	238	3	0	0	exonic	H4c9	nonsynonymous SNV	H4c9:NM_175656:exon1:c.A218G:p.Y73C	13qA3.1	chr13-5861853-119457015	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.299047681	2	0.7652703	GTA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr13	27247883	PW1826tail	autochthonous	sgMsh2 aCD4/8	27247883	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	68	0	0	NA	exonic	Prl3b1	synonymous SNV	Prl3b1:NM_008865:exon4:c.A390G:p.P130P	13qA3.1	chr13-5861853-119457015	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.851635788	1	0.999485	CAC	synonymous	NA	NA	NA	NA
PW1826T10	chr13	103830261	PW1826tail	autochthonous	sgMsh2 aCD4/8	103830261	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	95	12	1	0.083333333	exonic	Erbin	nonsynonymous SNV	"Erbin:NM_001005868:exon22:c.A3680C:p.D1227A,Erbin:NM_001289475:exon22:c.A3680C:p.D1227A"	13qD1	chr13-5861853-119457015	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.669606765	1	0.8797997	ATC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr14	29346957	PW1826tail	autochthonous	sgMsh2 aCD4/8	29346957	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	119	0	0	NA	exonic	Cacna2d3	nonsynonymous SNV	Cacna2d3:NM_009785:exon8:c.G812A:p.R271H	14qA3	chr14-3072210-123348696	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.351055974	2	0.9819457	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr14	61213112	PW1826tail	autochthonous	sgMsh2 aCD4/8	61213112	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	262	0	0	NA	exonic	Sacs	synonymous SNV	Sacs:NM_015788:exon10:c.A12606C:p.T4202T	14qD1	chr14-3072210-123348696	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.507080851	2	0.9999998	CAT	synonymous	ACATAC	12	ACATACACATAC	NA
PW1826T10	chr14	65077032	PW1826tail	autochthonous	sgMsh2 aCD4/8	65077032	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	79	14	1	0.071428571	exonic	Extl3	nonsynonymous SNV	"Extl3:NM_001360385:exon2:c.A700G:p.I234V,Extl3:NM_018788:exon3:c.A700G:p.I234V"	14qD1	chr14-3072210-123348696	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.780124386	1	0.9975139	ATG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr15	55577470	PW1826tail	autochthonous	sgMsh2 aCD4/8	55577470	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	196	14	3	0.214285714	exonic	Mtbp	nonsynonymous SNV	"Mtbp:NM_001168250:exon11:c.C1052A:p.P351Q,Mtbp:NM_134092:exon11:c.C1052A:p.P351Q"	15qD1	chr15-3341105-71950897	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.552588107	2	0.9992626	CCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr15	79729549	PW1826tail	autochthonous	sgMsh2 aCD4/8	79729549	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	52	26	5	0.192307692	exonic	Sun2	nonsynonymous SNV	"Sun2:NM_194342:exon9:c.G1024A:p.A342T,Sun2:NM_001205345:exon10:c.G1120A:p.A374T,Sun2:NM_001205346:exon10:c.G1114A:p.A372T"	15qE1	chr15-71950898-103472940	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	1	1	0.9999331	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr16	4418087	PW1826tail	autochthonous	sgMsh2 aCD4/8	4418087	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	83	2	1	0.5	exonic	Adcy9	nonsynonymous SNV	"Adcy9:NM_009624:exon2:c.C1459T:p.R487C,Adcy9:NM_001291910:exon3:c.C748T:p.R250C"	16qA1	chr16-3746585-97451700	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	1	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr16	31791845	PW1826tail	autochthonous	sgMsh2 aCD4/8	31791845	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.101	77	83	0	0	exonic	Dlg1	frameshift insertion	"Dlg1:NM_001252436:exon6:c.695dupA:p.I234Nfs*7,Dlg1:NM_001357281:exon6:c.557dupA:p.I188Nfs*7,Dlg1:NM_001252433:exon9:c.845dupA:p.I284Nfs*7,Dlg1:NM_001252434:exon9:c.845dupA:p.I284Nfs*7,Dlg1:NM_001357282:exon9:c.845dupA:p.I284Nfs*7,Dlg1:NM_001252435:exon10:c.944dupA:p.I317Nfs*7,Dlg1:NM_007862:exon10:c.944dupA:p.I317Nfs*7"	16qB2	chr16-3746585-97451700	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.656604692	NA	NA	AGA	frameshift	A	5	AAAAA	1
PW1826T10	chr16	85866673	PW1826tail	autochthonous	sgMsh2 aCD4/8	85866673	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	75	0	0	NA	exonic	Adamts5	synonymous SNV	Adamts5:NM_011782:exon7:c.C2172T:p.C724C	16qC3.3	chr16-3746585-97451700	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.75412024	1	0.9910778	CGC	synonymous	NA	NA	NA	NA
PW1826T10	chr17	12210748	PW1826tail	autochthonous	sgMsh2 aCD4/8	12210748	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	149	54	3	0.055555556	exonic	Agpat4	nonsynonymous SNV	Agpat4:NM_026644:exon5:c.G620A:p.R207H	17qA1	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.390062193	2	0.9993966	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr17	35978733	PW1826tail	autochthonous	sgMsh2 aCD4/8	35978733	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	363	26	1	0.038461538	exonic	Prr3	frameshift deletion	"Prr3:NM_001165892:exon2:c.161delA:p.N54Tfs*19,Prr3:NM_001282025:exon3:c.161delA:p.N54Tfs*19"	17qB1	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.435569449	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW1826T10	chr17	36324509	PW1826tail	autochthonous	sgMsh2 aCD4/8	36324509	T	C	SNV	Mutect2;Vardict	2	0.02	296	0	0	NA	exonic	H2-M10.1	nonsynonymous SNV	"H2-M10.1:NM_001360498:exon4:c.A500G:p.Q167R,H2-M10.1:NM_013544:exon4:c.A629G:p.Q210R"	17qB1	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.130020731	3	1.31E-09	TTG	nonsynonymous	G	5	GGGGG	NA
PW1826T10	chr17	58974670	PW1826tail	autochthonous	sgMsh2 aCD4/8	58974670	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.024	384	0	0	NA	exonic	Pdzph1	nonsynonymous SNV	Pdzph1:NM_027001:exon3:c.C616T:p.P206S	17qD	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.156024877	3	1.03E-09	GGA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr17	66150822	PW1826tail	autochthonous	sgMsh2 aCD4/8	66150822	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.047	168	27	0	0	exonic	Ddx11	nonsynonymous SNV	"Ddx11:NM_001003919:exon27:c.A2627G:p.H876R,Ddx11:NM_001348292:exon27:c.A2705G:p.H902R"	17qE1.1	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.305548718	2	0.8402685	CAC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr17	84740643	PW1826tail	autochthonous	sgMsh2 aCD4/8	84740643	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	161	31	3	0.096774194	exonic	Lrpprc	nonsynonymous SNV	Lrpprc:NM_028233:exon24:c.G2527T:p.A843S	17qE4	chr17-3077483-90208269	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.487577741	2	0.9999857	GCT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr18	52476334	PW1826tail	autochthonous	sgMsh2 aCD4/8	52476334	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.101	67	15	0	0	exonic	Srfbp1	stopgain	Srfbp1:NM_026040:exon3:c.C190T:p.R64X	18qD1	chr18-3325290-89769213	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.656604692	1	0.7171579	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr18	69961471	PW1826tail	autochthonous	sgMsh2 aCD4/8	69961471	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.104	58	43	0	0	exonic	Ccdc68	frameshift deletion	Ccdc68:NM_201362:exon9:c.795delA:p.N267Ifs*2	18qE2	chr18-3325290-89769213	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.676107801	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1826T10	chr19	29595440	PW1826tail	autochthonous	sgMsh2 aCD4/8	29595440	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	109	38	1	0.026315789	exonic	Ric1	nonsynonymous SNV	Ric1:NM_001081319:exon19:c.A2279C:p.H760P	19qC1	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.58509329	2	0.09125452	CAC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr19	39992492	PW1826tail	autochthonous	sgMsh2 aCD4/8	39992492	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	180	0	0	NA	exonic	Cyp2c37	nonsynonymous SNV	Cyp2c37:NM_010001:exon1:c.C53T:p.S18L	19qC3	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.955652373	1	1.00E-09	TCA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr19	46252201	PW1826tail	autochthonous	sgMsh2 aCD4/8	46252201	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.644	68	8	7	0.875	exonic	Gbf1	nonsynonymous SNV	Gbf1:NM_178930:exon5:c.G383T:p.S128I	19qC3	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	3	1	1	0.9999967	AGT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr19	48748263	PW1826tail	autochthonous	sgMsh2 aCD4/8	48748263	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	72	0	0	NA	exonic	Sorcs3	nonsynonymous SNV	Sorcs3:NM_025696:exon15:c.G2024A:p.R675H	19qD1	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.481076705	2	0.9942907	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr19	55391807	PW1826tail	autochthonous	sgMsh2 aCD4/8	55391807	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.088	85	74	3	0.040540541	exonic	Vti1a	synonymous SNV	"Vti1a:NM_001293686:exon5:c.G366A:p.T122T,Vti1a:NM_001360432:exon5:c.G366A:p.T122T,Vti1a:NM_016862:exon5:c.G366A:p.T122T,Vti1a:NM_001293685:exon6:c.G387A:p.T129T,Vti1a:NM_001360431:exon6:c.G387A:p.T129T"	19qD2	chr19-4320845-61225035	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.572091217	2	0.9147386	CGG	synonymous	NA	NA	NA	NA
PW1826T10	chr2	6023461	PW1826tail	autochthonous	sgMsh2 aCD4/8	6023461	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	165	50	0	0	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon12:c.C2357T:p.T786M	2qA1	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.390062193	2	0.9996938	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr2	18186362	PW1826tail	autochthonous	sgMsh2 aCD4/8	18186362	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	118	50	7	0.14	exonic	Mllt10	nonsynonymous SNV	"Mllt10:NM_001252560:exon14:c.C1844T:p.A615V,Mllt10:NM_010804:exon14:c.C1844T:p.A615V,Mllt10:NM_001252561:exon15:c.C1610T:p.A537V"	2qA3	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.591594326	2	0.8903457	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr2	24706200	PW1826tail	autochthonous	sgMsh2 aCD4/8	24706200	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.125	44	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_001042528:exon11:c.C1478T:p.A493V,Cacna1b:NM_007579:exon11:c.C1478T:p.A493V"	2qA3	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.812629569	1	0.9819352	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr2	30336986	PW1826tail	autochthonous	sgMsh2 aCD4/8	30336986	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	97	22	2	0.090909091	exonic	Nup188	synonymous SNV	Nup188:NM_198304:exon33:c.G3570A:p.G1190G	2qB	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.572091217	2	0.9364123	GGG	synonymous	NA	NA	NA	NA
PW1826T10	chr2	168536288	PW1826tail	autochthonous	sgMsh2 aCD4/8	168536288	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	83	0	0	NA	exonic	Nfatc2	nonsynonymous SNV	"Nfatc2:NM_001291171:exon3:c.G106T:p.V36F,Nfatc2:NM_001291173:exon3:c.G106T:p.V36F,Nfatc2:NM_001291176:exon3:c.G106T:p.V36F,Nfatc2:NM_001291178:exon3:c.G106T:p.V36F,Nfatc2:NM_001037177:exon4:c.G1456T:p.V486F,Nfatc2:NM_001037178:exon4:c.G793T:p.V265F,Nfatc2:NM_001136073:exon4:c.G1456T:p.V486F,Nfatc2:NM_001291168:exon4:c.G1396T:p.V466F,Nfatc2:NM_001291169:exon4:c.G1396T:p.V466F,Nfatc2:NM_001291170:exon4:c.G793T:p.V265F,Nfatc2:NM_001291172:exon4:c.G1396T:p.V466F,Nfatc2:NM_001291174:exon4:c.G793T:p.V265F,Nfatc2:NM_001291175:exon4:c.G793T:p.V265F,Nfatc2:NM_001291177:exon4:c.G793T:p.V265F,Nfatc2:NM_001291179:exon4:c.G793T:p.V265F,Nfatc2:NM_010899:exon4:c.G1456T:p.V486F"	2qH3	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.35755701	2	0.9666513	ACC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr2	172362817	PW1826tail	autochthonous	sgMsh2 aCD4/8	172362818	CT	-	Deletion	Mutect2;Vardict	2	0.056	77	14	0	0	exonic	Aurka	frameshift deletion	"Aurka:NM_001291185:exon6:c.635_636del:p.E212Afs*7,Aurka:NM_011497:exon6:c.701_702del:p.E234Afs*7"	2qH3	chr2-4925576-181570238	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.364058047	NA	NA	GCT	frameshift	NA	NA	NA	-2
PW1826T10	chr3	108199670	PW1826tail	autochthonous	sgMsh2 aCD4/8	108199670	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	97	14	0	0	exonic	Cyb561d1	nonsynonymous SNV	"Cyb561d1:NM_001081320:exon3:c.C232T:p.H78Y,Cyb561d1:NM_028061:exon3:c.C58T:p.H20Y"	3qF2.3	chr3-14602770-159911278	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.838633715	1	0.9999637	TGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr3	135234889	PW1826tail	autochthonous	sgMsh2 aCD4/8	135234889	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	107	0	0	NA	exonic	Cenpe	synonymous SNV	Cenpe:NM_173762:exon19:c.G1908T:p.V636V	3qG3	chr3-14602770-159911278	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.715114021	1	0.9909025	TGG	synonymous	NA	NA	NA	NA
PW1826T10	chr3	142810722	PW1826tail	autochthonous	sgMsh2 aCD4/8	142810722	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	88	76	5	0.065789474	exonic	Pkn2	nonsynonymous SNV	Pkn2:NM_178654:exon11:c.G1642A:p.A548T	3qH1	chr3-14602770-159911278	6	3	3	0.843	5.480373814	RARE KARYOTYPE	1	0.500579815	2	0.9962102	GCG	nonsynonymous	TGCG	9	TGCGTGCGT	NA
PW1826T10	chr4	72170761	PW1826tail	autochthonous	sgMsh2 aCD4/8	72170761	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	190	72	2	0.027777778	exonic	Tle1	nonsynonymous SNV	"Tle1:NM_001285529:exon5:c.G244A:p.A82T,Tle1:NM_001285530:exon5:c.G244A:p.A82T,Tle1:NM_001285531:exon5:c.G244A:p.A82T,Tle1:NM_001285532:exon5:c.G244A:p.A82T,Tle1:NM_011599:exon5:c.G244A:p.A82T"	4qC3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	1	0.760621277	1	0.9999971	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr4	74074060	PW1826tail	autochthonous	sgMsh2 aCD4/8	74074060	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	267	0	0	NA	exonic	Frmd3	stopgain	"Frmd3:NM_001163732:exon2:c.C163T:p.Q55X,Frmd3:NM_172869:exon2:c.C163T:p.Q55X"	4qC3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	1	0.260041462	3	0.9738604	GCA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr4	133412086	PW1826tail	autochthonous	sgMsh2 aCD4/8	133412086	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	71	13	0	0	exonic	Slc9a1	nonsynonymous SNV	Slc9a1:NM_016981:exon2:c.C614T:p.A205V	4qD2.3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	2	1	1	0.9999981	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr4	140949738	PW1826tail	autochthonous	sgMsh2 aCD4/8	140949738	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	49	1	0	0	exonic	Padi2	synonymous SNV	Padi2:NM_008812:exon16:c.C1836T:p.F612F	4qD3	chr4-6393150-155091012	5	4	1	0.843	5.480373814	RARE KARYOTYPE	1	0.864637862	1	0.996787	TCG	synonymous	NA	NA	NA	NA
PW1826T10	chr5	20534363	PW1826tail	autochthonous	sgMsh2 aCD4/8	20534363	C	A	SNV	Mutect2;Vardict	2	0.059	76	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon11:c.C1614A:p.G538G,Magi2:NM_015823:exon11:c.C1614A:p.G538G,Magi2:NM_001170746:exon12:c.C2103A:p.G701G"	5qA3	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.383561157	2	0.9834192	GCA	synonymous	NA	NA	NA	NA
PW1826T10	chr5	30383133	PW1826tail	autochthonous	sgMsh2 aCD4/8	30383133	G	A	SNV	Mutect2;Vardict	2	0.132	31	0	0	NA	exonic	Otof	stopgain	"Otof:NM_001286421:exon23:c.C2761T:p.R921X,Otof:NM_001313767:exon23:c.C2761T:p.R921X,Otof:NM_031875:exon23:c.C2761T:p.R921X,Otof:NM_001100395:exon24:c.C2806T:p.R936X"	5qB1	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.858136825	1	0.9701488	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr5	101836184	PW1826tail	autochthonous	sgMsh2 aCD4/8	101836184	C	-	Deletion	Mutect2;Vardict	2	0.097	92	15	0	0	exonic	Wdfy3	frameshift deletion	Wdfy3:NM_172882:exon67:c.10501delG:p.A3501Qfs*46	5qE4	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.630600546	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1826T10	chr5	110127455	PW1826tail	autochthonous	sgMsh2 aCD4/8	110127455	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	67	6	0	0	exonic	Zfp605	synonymous SNV	Zfp605:NM_001163996:exon5:c.C438T:p.N146N	5qF	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.507080851	2	0.9827649	ACC	synonymous	NA	NA	NA	NA
PW1826T10	chr5	120787988	PW1826tail	autochthonous	sgMsh2 aCD4/8	120787988	A	-	Deletion	Mutect2;Vardict	2	0.069	170	1	0	0	exonic	Oas1e	frameshift deletion	"Oas1e:NM_001347450:exon5:c.1014delT:p.F338Lfs*8,Oas1e:NM_145210:exon5:c.1014delT:p.F338Lfs*8"	5qF	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.448571522	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1826T10	chr5	124124893	PW1826tail	autochthonous	sgMsh2 aCD4/8	124124893	G	-	Deletion	Strelka2;Vardict	2	0.2105	19	22	3	0.136363636	exonic	Pitpnm2	frameshift deletion	Pitpnm2:NM_001289472:exon17:c.2594delC:p.P865Hfs*14	5qF	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	NA	NA	TGG	frameshift	G	8	GGGGGGGG	-1
PW1826T10	chr5	128750847	PW1826tail	autochthonous	sgMsh2 aCD4/8	128750847	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	127	0	0	NA	exonic	Piwil1	nonsynonymous SNV	Piwil1:NM_021311:exon18:c.G1990A:p.V664I	5qG1.3	chr5-3582301-151648293	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.448571522	2	0.9999382	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr6	24743746	PW1826tail	autochthonous	sgMsh2 aCD4/8	24743746	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.054	207	0	0	NA	exonic	Hyal6	frameshift deletion	Hyal6:NM_028920:exon4:c.1440delT:p.S482Pfs*1	6qA3.1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.351055974	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1826T10	chr6	43236316	PW1826tail	autochthonous	sgMsh2 aCD4/8	43236316	C	T	SNV	Mutect2;MuSe;Vardict	3	0.059	348	0	0	NA	exonic	Olfr47	nonsynonymous SNV	Olfr47:NM_146370:exon1:c.C707T:p.A236V	6qB2.1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.383561157	2	0.9999996	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr6	85447651	PW1826tail	autochthonous	sgMsh2 aCD4/8	85447651	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	80	35	3	0.085714286	exonic	Pradc1	nonsynonymous SNV	Pradc1:NM_001163427:exon4:c.G316A:p.E106K	6qC3	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.630600546	1	7.41E-07	TCC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr6	119970964	PW1826tail	autochthonous	sgMsh2 aCD4/8	119970964	C	T	SNV	Mutect2;Vardict	2	0.045	116	79	1	0.012658228	exonic	Wnk1	nonsynonymous SNV	"Wnk1:NM_001185020:exon6:c.G1514A:p.R505H,Wnk1:NM_001185021:exon6:c.G1514A:p.R505H,Wnk1:NM_001199083:exon6:c.G1514A:p.R505H,Wnk1:NM_001199084:exon6:c.G1514A:p.R505H,Wnk1:NM_198703:exon6:c.G1514A:p.R505H"	6qF1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.292546645	2	0.6874261	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr6	132868647	PW1826tail	autochthonous	sgMsh2 aCD4/8	132868647	G	A	SNV	Mutect2;Vardict	2	0.03	489	0	0	NA	exonic	Tas2r110	nonsynonymous SNV	Tas2r110:NM_199155:exon1:c.G640A:p.V214M	6qG1	chr6-3994124-149014300	7	4	3	0.843	5.480373814	RARE KARYOTYPE	1	0.195031097	3	1.22E-09	AGT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr7	5481003	PW1826tail	autochthonous	sgMsh2 aCD4/8	5481003	C	A	SNV	Mutect2;Vardict	2	0.024	305	0	0	NA	exonic	Vmn2r28	stopgain	Vmn2r28:NM_001081405:exon6:c.G2197T:p.G733X	7qA1	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.156024877	3	6.94E-09	CCA	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr7	10710129	PW1826tail	autochthonous	sgMsh2 aCD4/8	10710129	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	exonic	Nlrp4b	nonsynonymous SNV	"Nlrp4b:NM_001355151:exon3:c.G4A:p.A2T,Nlrp4b:NM_172481:exon3:c.G4A:p.A2T"	7qA1	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.214534206	3	0.9955137	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr7	45049496	PW1826tail	autochthonous	sgMsh2 aCD4/8	45049496	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.333	13	4	0	0	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon4:c.T994C:p.L332L	7qB3	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	1	0.9089367	AAA	synonymous	NA	NA	NA	NA
PW1826T10	chr7	72259298	PW1826tail	autochthonous	sgMsh2 aCD4/8	72259298	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	82	0	0	NA	exonic	Mctp2	nonsynonymous SNV	Mctp2:NM_001024703:exon2:c.C266T:p.P89L	7qD1	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.663105728	1	0.8075369	CGG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr7	85232375	PW1826tail	autochthonous	sgMsh2 aCD4/8	85232375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	335	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon4:c.C1496T:p.A499V	7qD3	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	1	1	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr7	104189824	PW1826tail	autochthonous	sgMsh2 aCD4/8	104189824	T	C	SNV	Mutect2;Vardict	2	0.03	227	0	0	NA	exonic	Olfr649	nonsynonymous SNV	Olfr649:NM_147055:exon1:c.A382G:p.I128V	7qE3	chr7-3894485-142893198	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.195031097	3	0.9999404	ATG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr8	13123935	PW1826tail	autochthonous	sgMsh2 aCD4/8	13123935	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	151	84	2	0.023809524	exonic	Cul4a	synonymous SNV	"Cul4a:NM_001363448:exon5:c.C567T:p.G189G,Cul4a:NM_001363450:exon6:c.C306T:p.G102G,Cul4a:NM_146207:exon7:c.C741T:p.G247G"	8qA1.1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.299047681	2	0.7594096	GCC	synonymous	NA	NA	NA	NA
PW1826T10	chr8	22560528	PW1826tail	autochthonous	sgMsh2 aCD4/8	22560528	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.136	25	56	0	0	exonic	Slc20a2	synonymous SNV	Slc20a2:NM_011394:exon7:c.C762T:p.R254R	8qA2	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.884140971	1	0.9571692	GCG	synonymous	NA	NA	NA	NA
PW1826T10	chr8	25569675	PW1826tail	autochthonous	sgMsh2 aCD4/8	25569675	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	7	0	0	exonic	Fgfr1	synonymous SNV	"Fgfr1:NM_001079909:exon10:c.C1200T:p.F400F,Fgfr1:NM_001079908:exon11:c.C1461T:p.F487F,Fgfr1:NM_010206:exon11:c.C1467T:p.F489F"	8qA2	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.455072559	2	3.56E-09	TCG	synonymous	NA	NA	NA	NA
PW1826T10	chr8	47065979	PW1826tail	autochthonous	sgMsh2 aCD4/8	47065979	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	93	0	0	NA	exonic	Enpp6	nonsynonymous SNV	Enpp6:NM_177304:exon5:c.C781A:p.L261M	8qB1.1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.526583961	2	0.9909516	CCT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr8	79061068	PW1826tail	autochthonous	sgMsh2 aCD4/8	79061068	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.28	26	9	0	0	exonic	Zfp827	nonsynonymous SNV	"Zfp827:NM_001294279:exon2:c.G862A:p.A288T,Zfp827:NM_178267:exon2:c.G862A:p.A288T"	8qC1	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	2	1	1	0.9913473	AGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr8	105675999	PW1826tail	autochthonous	sgMsh2 aCD4/8	105675999	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	102	47	4	0.085106383	exonic	Ctcf	nonsynonymous SNV	"Ctcf:NM_001358924:exon9:c.C1522T:p.R508W,Ctcf:NM_181322:exon9:c.C1522T:p.R508W"	8qD3	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	0.721615057	1	0.9918097	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr8	107452997	PW1826tail	autochthonous	sgMsh2 aCD4/8	107452997	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	95	16	1	0.0625	exonic	Wwp2	nonsynonymous SNV	Wwp2:NM_025830:exon2:c.G4A:p.A2T	8qD3	chr8-3154030-126969919	6	4	2	0.843	5.480373814	RARE KARYOTYPE	1	1	1	2.22E-08	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr9	3634686	PW1826tail	autochthonous	sgMsh2 aCD4/8	3634686	G	A	SNV	Mutect2;Vardict	2	0.042	128	0	0	NA	exonic	Gucy1a2	synonymous SNV	Gucy1a2:NM_001033322:exon4:c.G729A:p.T243T	9qA1	chr9-3342997-124127224	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.273043535	3	0.5978489	CGG	synonymous	NA	NA	NA	NA
PW1826T10	chr9	7834186	PW1826tail	autochthonous	sgMsh2 aCD4/8	7834186	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	144	22	0	0	exonic	Birc2	nonsynonymous SNV	"Birc2:NM_001291503:exon2:c.G293T:p.S98I,Birc2:NM_007465:exon2:c.G293T:p.S98I"	9qA1	chr9-3342997-124127224	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.39656323	2	0.9995159	ACT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chr9	111593727	PW1826tail	autochthonous	sgMsh2 aCD4/8	111593727	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	192	0	0	NA	exonic	Stac	nonsynonymous SNV	"Stac:NM_001324546:exon6:c.A395G:p.N132S,Stac:NM_016853:exon7:c.A827G:p.N276S"	9qF3	chr9-3342997-124127224	4	2	2	0.843	5.480373814	RARE KARYOTYPE	1	0.539586034	2	0.999755	GTT	nonsynonymous	NA	NA	NA	NA
PW1826T10	chrX	152242099	PW1826tail	autochthonous	sgMsh2 aCD4/8	152242099	C	-	Deletion	Strelka2;Vardict	2	0.0833	48	21	2	0.095238095	exonic	Kdm5c	frameshift deletion	Kdm5c:NM_013668:exon5:c.585delC:p.L197Ffs*36	XqF3	NA	NA	NA	NA	0.843	5.480373814	RARE KARYOTYPE	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW1826T3	chr1	67214065	PW1826tail	autochthonous	sgMsh2 aCD4/8	67214065	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	136	0	0	NA	exonic	Cps1	nonsynonymous SNV	Cps1:NM_001080809:exon31:c.C3715T:p.P1239S	1qC3	chr1-4839315-194950953	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999983	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr1	106953772	PW1826tail	autochthonous	sgMsh2 aCD4/8	106953772	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	196	18	0	0	exonic	Serpinb12	nonsynonymous SNV	"Serpinb12:NM_001199213:exon6:c.C638A:p.A213D,Serpinb12:NM_027971:exon6:c.C638A:p.A213D"	1qE2.1	chr1-4839315-194950953	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.155695499	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr10	84374424	PW1826tail	autochthonous	sgMsh2 aCD4/8	84374424	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	88	3	0	0	exonic	Nuak1	nonsynonymous SNV	Nuak1:NM_001004363:exon7:c.G1799A:p.R600H	10qC1	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.278364679	3	0.9975179	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr10	102388256	PW1826tail	autochthonous	sgMsh2 aCD4/8	102388256	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	179	0	0	NA	exonic	Mgat4c	frameshift deletion	"Mgat4c:NM_026243:exon4:c.330delA:p.G113Efs*19,Mgat4c:NM_001162368:exon6:c.330delA:p.G113Efs*19,Mgat4c:NM_001162369:exon6:c.330delA:p.G113Efs*19,Mgat4c:NM_001205098:exon8:c.330delA:p.G113Efs*19"	10qD1	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.382161678	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1826T3	chr10	103215322	PW1826tail	autochthonous	sgMsh2 aCD4/8	103215322	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	223	0	0	NA	exonic	Lrriq1	frameshift deletion	"Lrriq1:NM_001163559:exon8:c.1568delA:p.N523Mfs*7,Lrriq1:NM_001361058:exon8:c.1568delA:p.N523Mfs*7,Lrriq1:NM_029134:exon8:c.1568delA:p.N523Mfs*7"	10qD1	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.853966219	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1826T3	chr10	127049826	PW1826tail	autochthonous	sgMsh2 aCD4/8	127049826	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.412	98	0	0	NA	exonic	Cyp27b1	nonsynonymous SNV	Cyp27b1:NM_010009:exon3:c.G533A:p.G178E	10qD3	chr10-4453448-130453386	3	2	1	0.785	3.703665647	POOR GOF (77%)	2	1	1	0.999944	GGG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr11	6601225	PW1826tail	autochthonous	sgMsh2 aCD4/8	6601225	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	115	3	3	1	exonic	Nacad	synonymous SNV	Nacad:NM_001081652:exon2:c.G1965A:p.P655P	11qA1	chr11-3132249-69579350	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999884	GCG	synonymous	NA	NA	NA	NA
PW1826T3	chr11	28926222	PW1826tail	autochthonous	sgMsh2 aCD4/8	28926222	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	149	35	14	0.4	exonic	Efemp1	synonymous SNV	Efemp1:NM_146015:exon11:c.C1386T:p.I462I	11qA3.3	chr11-3132249-69579350	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999995	TCG	synonymous	NA	NA	NA	NA
PW1826T3	chr11	55485720	PW1826tail	autochthonous	sgMsh2 aCD4/8	55485720	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.331	182	107	7	0.065420561	exonic	G3bp1	frameshift deletion	G3bp1:NM_013716:exon2:c.77delC:p.P27Rfs*38	11qB1.3	chr11-3132249-69579350	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1826T3	chr11	58206706	PW1826tail	autochthonous	sgMsh2 aCD4/8	58206706	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.321	177	10	3	0.3	exonic	Igtp	frameshift deletion	Igtp:NM_018738:exon3:c.702delC:p.L237Yfs*2	11qB1.3	chr11-3132249-69579350	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
PW1826T3	chr11	69034898	PW1826tail	autochthonous	sgMsh2 aCD4/8	69034898	C	A	SNV	Mutect2;Vardict	2	0.025	226	16	0	0	exonic	Ctc1	synonymous SNV	"Ctc1:NM_001013256:exon20:c.C3156A:p.R1052R,Ctc1:NM_001143790:exon20:c.C3153A:p.R1051R,Ctc1:NM_001281464:exon20:c.C2415A:p.R805R,Ctc1:NM_001281465:exon20:c.C2418A:p.R806R"	11qB3	chr11-3132249-69579350	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.117951135	3	1	GCC	synonymous	NA	NA	NA	NA
PW1826T3	chr11	70610300	PW1826tail	autochthonous	sgMsh2 aCD4/8	70610300	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	110	121	10	0.082644628	exonic	Mink1	nonsynonymous SNV	"Mink1:NM_016713:exon22:c.A2609C:p.D870A,Mink1:NM_001045959:exon23:c.A2720C:p.D907A,Mink1:NM_176893:exon23:c.A2633C:p.D878A,Mink1:NM_001045964:exon24:c.A2741C:p.D914A"	11qB3	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.504830859	2	0.9999326	GAT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr11	70644837	PW1826tail	autochthonous	sgMsh2 aCD4/8	70644837	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.078	114	250	17	0.068	exonic	Slc25a11	frameshift deletion	Slc25a11:NM_024211:exon8:c.874delC:p.H292Tfs*11	11qB3	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.368007542	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1826T3	chr11	77469093	PW1826tail	autochthonous	sgMsh2 aCD4/8	77469093	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	63	6	1	0.166666667	exonic	Coro6	frameshift deletion	"Coro6:NM_139129:exon8:c.979delC:p.P327Lfs*24,Coro6:NM_001368670:exon9:c.979delC:p.P327Lfs*24,Coro6:NM_139128:exon9:c.1099delC:p.P367Lfs*24,Coro6:NM_139130:exon9:c.1099delC:p.P367Lfs*24"	11qB5	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1826T3	chr11	97526224	PW1826tail	autochthonous	sgMsh2 aCD4/8	97526224	G	-	Deletion	Strelka2;Vardict	2	0.3143	35	1	0	0	exonic	Srcin1	frameshift deletion	Srcin1:NM_018873:exon15:c.2613delC:p.N872Tfs*3	11qD	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	NA	NA	TGG	frameshift	G	9	GGGGGGGGG	-1
PW1826T3	chr11	118285809	PW1826tail	autochthonous	sgMsh2 aCD4/8	118285809	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.139	38	15	2	0.133333333	exonic	Usp36	nonsynonymous SNV	Usp36:NM_001033528:exon3:c.T182A:p.V61E	11qE2	chr11-69590981-121956809	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.655808312	2	0.000868634	TAC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr12	5006714	PW1826tail	autochthonous	sgMsh2 aCD4/8	5006714	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	230	22	0	0	exonic	Atad2b	nonsynonymous SNV	Atad2b:NM_001362349:exon19:c.C2560A:p.L854M	12qA1.1	chr12-3237715-119465464	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.202875953	3	1.01E-09	GCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr12	79246592	PW1826tail	autochthonous	sgMsh2 aCD4/8	79246592	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	113	13	2	0.153846154	exonic	Zfyve26	nonsynonymous SNV	Zfyve26:NM_001008550:exon33:c.A6008G:p.H2003R	12qC3	chr12-3237715-119465464	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.858684265	1	0.9919247	ATG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr12	89510485	PW1826tail	autochthonous	sgMsh2 aCD4/8	89510485	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	162	0	0	NA	exonic	Nrxn3	synonymous SNV	"Nrxn3:NM_172544:exon10:c.C1437T:p.G479G,Nrxn3:NM_001198587:exon11:c.C2556T:p.G852G"	12qD3	chr12-3237715-119465464	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999998	GCG	synonymous	NA	NA	NA	NA
PW1826T3	chr14	21669588	PW1826tail	autochthonous	sgMsh2 aCD4/8	21669588	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	124	14	1	0.071428571	exonic	Kat6b	nonsynonymous SNV	"Kat6b:NM_001205241:exon17:c.C4007T:p.T1336I,Kat6b:NM_017479:exon17:c.C4007T:p.T1336I"	14qA3	chr14-3072210-123299668	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.202875953	3	0.9999995	ACC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr14	44989495	PW1826tail	autochthonous	sgMsh2 aCD4/8	44989495	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	157	2	0	0	exonic	Ptger2	synonymous SNV	Ptger2:NM_008964:exon1:c.G531A:p.G177G	14qC1	chr14-3072210-123299668	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.165131589	3	1.24E-09	GGG	synonymous	NA	NA	NA	NA
PW1826T3	chr14	66043168	PW1826tail	autochthonous	sgMsh2 aCD4/8	66043168	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	158	0	0	NA	exonic	Adam2	nonsynonymous SNV	Adam2:NM_009618:exon14:c.G1391A:p.G464D	14qD1	chr14-3072210-123299668	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.160413544	3	1.12E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr15	31582029	PW1826tail	autochthonous	sgMsh2 aCD4/8	31582029	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	113	458	32	0.069868996	exonic	Cmbl	synonymous SNV	Cmbl:NM_181588:exon2:c.C171A:p.P57P	15qB2	chr15-3280572-103351727	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.556729358	2	0.9998473	CCA	synonymous	NA	NA	NA	NA
PW1826T3	chr15	58968840	PW1826tail	autochthonous	sgMsh2 aCD4/8	58968840	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	202	38	0	0	exonic	Mtss1	frameshift deletion	"Mtss1:NM_001146180:exon6:c.459delA:p.R155Gfs*50,Mtss1:NM_144800:exon6:c.459delA:p.V154Wfs*55"	15qD1	chr15-3280572-103351727	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.410469951	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1826T3	chr15	75948153	PW1826tail	autochthonous	sgMsh2 aCD4/8	75948153	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	186	126	14	0.111111111	exonic	Zfp623	synonymous SNV	Zfp623:NM_030199:exon2:c.G957A:p.E319E	15qD3	chr15-3280572-103351727	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.169849635	3	1.01E-09	AGT	synonymous	NA	NA	NA	NA
PW1826T3	chr15	90489055	PW1826tail	autochthonous	sgMsh2 aCD4/8	90489055	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	178	24	8	0.333333333	exonic	Cpne8	stopgain	"Cpne8:NM_001357979:exon19:c.G1258T:p.G420X,Cpne8:NM_025815:exon20:c.G1666T:p.G556X"	15qE3	chr15-3280572-103351727	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.920018855	1	0.99999	CCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr16	4948255	PW1826tail	autochthonous	sgMsh2 aCD4/8	4948255	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.252	125	31	6	0.193548387	exonic	Anks3	nonsynonymous SNV	Anks3:NM_028301:exon8:c.A974G:p.D325G	16qA1	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999954	ATC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr16	9761791	PW1826tail	autochthonous	sgMsh2 aCD4/8	9761791	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.023	243	0	0	NA	exonic	Grin2a	nonsynonymous SNV	Grin2a:NM_008170:exon4:c.G607A:p.V203M	16qA1	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.108515044	3	1	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr16	13843749	PW1826tail	autochthonous	sgMsh2 aCD4/8	13843792	GAGCTGCAATTAATTGCCTTACCTTCTGCTGTCATCAGAGGGCT	-	Deletion	Mutect2;Vardict	2	0.017	228	0	0	NA	exonic	Pdxdc1	frameshift deletion	"Pdxdc1:NM_001039533:exon16:c.1378_1399del:p.S460Gfs*1,Pdxdc1:NM_001291017:exon16:c.1378_1399del:p.S460Gfs*1,Pdxdc1:NM_001357225:exon16:c.1375_1396del:p.S459Gfs*1,Pdxdc1:NM_053181:exon16:c.1378_1399del:p.S460Gfs*1"	16qA1	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.080206772	NA	NA	AGA	frameshift	NA	NA	NA	-44
PW1826T3	chr16	15777063	PW1826tail	autochthonous	sgMsh2 aCD4/8	15777063	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.218	151	10	4	0.4	exonic	Prkdc	nonsynonymous SNV	Prkdc:NM_011159:exon61:c.C8303T:p.A2768V	16qA2	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999996	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr16	30259746	PW1826tail	autochthonous	sgMsh2 aCD4/8	30259746	C	-	Deletion	Mutect2;Vardict	2	0.049	129	0	0	NA	exonic	Cpn2	frameshift deletion	Cpn2:NM_027904:exon2:c.1136delG:p.G379Afs*59	16qB2	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.231184225	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1826T3	chr16	34879264	PW1826tail	autochthonous	sgMsh2 aCD4/8	34879264	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.163	50	8	0	0	exonic	Mylk	synonymous SNV	Mylk:NM_139300:exon8:c.G996A:p.P332P	16qB3	chr16-3948854-97850976	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.769041402	1	0.6790719	CGC	synonymous	NA	NA	NA	NA
PW1826T3	chr17	13225834	PW1826tail	autochthonous	sgMsh2 aCD4/8	13225834	C	A	SNV	Mutect2;MuSe;Vardict	3	0.075	1357	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.C297A:p.L99L	17qA1	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.353853406	3	0.9989855	TCA	synonymous	NA	NA	NA	NA
PW1826T3	chr17	17971493	PW1826tail	autochthonous	sgMsh2 aCD4/8	17971493	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	264	0	0	NA	exonic	Fpr3	nonsynonymous SNV	Fpr3:NM_008042:exon1:c.T1025C:p.L342P	17qA3.2	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.835094038	1	0.9995822	CTT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr17	31453426	PW1826tail	autochthonous	sgMsh2 aCD4/8	31453426	T	-	Deletion	Mutect2;Vardict	2	0.049	229	7	0	0	exonic	Pde9a	frameshift deletion	"Pde9a:NM_001163748:exon8:c.498delT:p.L168Wfs*5,Pde9a:NM_008804:exon8:c.498delT:p.L168Wfs*5"	17qB1	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.231184225	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW1826T3	chr17	42503352	PW1826tail	autochthonous	sgMsh2 aCD4/8	42503352	C	T	SNV	Mutect2;Vardict	2	0.018	347	0	0	NA	exonic	Ptchd4	nonsynonymous SNV	"Ptchd4:NM_001355270:exon3:c.C2152T:p.P718S,Ptchd4:NM_028474:exon4:c.C2143T:p.P715S"	17qB3	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.084924817	3	1	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr17	87718633	PW1826tail	autochthonous	sgMsh2 aCD4/8	87718640	CGTCAGAC	-	Deletion	Mutect2;Vardict	2	0.444	91	18	4	0.222222222	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2038_2045del:p.Q681Gfs*14	17qE4	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	3	1	NA	NA	TCG	frameshift	NA	NA	NA	-8
PW1826T3	chr17	87718638	PW1826tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Mutect2;Vardict	2	0.718	49	6	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077483-94835879	5	3	2	0.785	3.703665647	POOR GOF (77%)	3	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1826T3	chr18	36748610	PW1826tail	autochthonous	sgMsh2 aCD4/8	36748610	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	163	185	19	0.102702703	exonic	Ik	nonsynonymous SNV	Ik:NM_011879:exon5:c.A296G:p.Y99C	18qB2	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.193439862	3	3.56E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr18	36961993	PW1826tail	autochthonous	sgMsh2 aCD4/8	36961993	T	C	SNV	Mutect2;Vardict	2	0.014	604	0	0	NA	exonic	Pcdha5	synonymous SNV	Pcdha5:NM_009959:exon1:c.T1554C:p.F518F	18qB2	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.066052636	3	1	TTG	synonymous	NA	NA	NA	NA
PW1826T3	chr18	37708601	PW1826tail	autochthonous	sgMsh2 aCD4/8	37708601	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	365	1	0	0	exonic	Pcdhga6	nonsynonymous SNV	Pcdhga6:NM_033589:exon1:c.C1373A:p.S458Y	18qB3	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	3	1	TCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr18	37815722	PW1826tail	autochthonous	sgMsh2 aCD4/8	37815722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	115	5	0	0	exonic	Pcdhgc4	nonsynonymous SNV	Pcdhgc4:NM_033582:exon1:c.G190A:p.A64T	18qB3	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.386879724	2	0.7492719	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr18	46290755	PW1826tail	autochthonous	sgMsh2 aCD4/8	46290755	T	-	Deletion	Strelka2;Vardict	2	0.2349	149	5	1	0.2	exonic	Ccdc112	frameshift deletion	Ccdc112:NM_001160399:exon6:c.915delA:p.E306Sfs*19	18qC	chr18-3325290-89769213	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	NA	NA	CTT	frameshift	T	11	TTTTTTTTTTT	-1
PW1826T3	chr19	10596972	PW1826tail	autochthonous	sgMsh2 aCD4/8	10596972	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	104	13	5	0.384615385	exonic	Tkfc	synonymous SNV	Tkfc:NM_145496:exon6:c.C615T:p.H205H	19qA	chr19-3649621-61225035	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999678	TGT	synonymous	GT	9	GTGTGTGTG	NA
PW1826T3	chr19	10859674	PW1826tail	autochthonous	sgMsh2 aCD4/8	10859674	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.271	67	18	1	0.055555556	exonic	Tmem132a	stopgain	"Tmem132a:NM_001378918:exon10:c.C1906T:p.R636X,Tmem132a:NM_133804:exon10:c.C1903T:p.R635X"	19qA	chr19-3649621-61225035	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9990173	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr19	13655002	PW1826tail	autochthonous	sgMsh2 aCD4/8	13655002	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	200	0	0	NA	exonic	Olfr1490	nonsynonymous SNV	Olfr1490:NM_001011832:exon1:c.G557A:p.R186H	19qA	chr19-3649621-61225035	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	5.50E-09	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr19	59060676	PW1826tail	autochthonous	sgMsh2 aCD4/8	59060676	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	75	32	0	0	exonic	Shtn1	synonymous SNV	"Shtn1:NM_001114312:exon2:c.C66T:p.G22G,Shtn1:NM_175172:exon2:c.C66T:p.G22G"	19qD3	chr19-3649621-61225035	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.278364679	3	0.9948447	CGC	synonymous	NA	NA	NA	NA
PW1826T3	chr2	33228661	PW1826tail	autochthonous	sgMsh2 aCD4/8	33228661	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	94	34	6	0.176470588	exonic	Angptl2	nonsynonymous SNV	Angptl2:NM_011923:exon2:c.G446A:p.R149Q	2qB	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.51426695	2	0.9997196	CGA	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	35100620	PW1826tail	autochthonous	sgMsh2 aCD4/8	35100620	A	-	Deletion	Mutect2;Vardict	2	0.04	383	1	0	0	exonic	AI182371	frameshift deletion	"AI182371:NM_001243102:exon1:c.34delT:p.W12Gfs*6,AI182371:NM_001243103:exon1:c.34delT:p.W12Gfs*6,AI182371:NM_001379434:exon1:c.34delT:p.W12Gfs*6,AI182371:NM_001379435:exon1:c.34delT:p.W12Gfs*5,AI182371:NM_001379436:exon1:c.34delT:p.W12Gfs*5,AI182371:NM_178885:exon1:c.34delT:p.W12Gfs*6"	2qB	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.188721816	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1826T3	chr2	57111631	PW1826tail	autochthonous	sgMsh2 aCD4/8	57111631	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	102	5	0	0	exonic	Nr4a2	nonsynonymous SNV	"Nr4a2:NM_001139509:exon3:c.C809T:p.A270V,Nr4a2:NM_013613:exon3:c.C809T:p.A270V"	2qC1.1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.198157907	3	0.999996	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	75937798	PW1826tail	autochthonous	sgMsh2 aCD4/8	75937798	C	T	SNV	Mutect2;Vardict	2	0.027	488	15	0	0	exonic	Ttc30b	nonsynonymous SNV	Ttc30b:NM_028235:exon1:c.G610A:p.A204T	2qC3	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.127387226	3	1	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	87372251	PW1826tail	autochthonous	sgMsh2 aCD4/8	87372251	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	455	0	0	NA	exonic	Olfr1121	stopgain	Olfr1121:NM_146348:exon1:c.C718T:p.R240X	2qD	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.736015084	2	0.9938818	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	89493646	PW1826tail	autochthonous	sgMsh2 aCD4/8	89493646	G	A	SNV	Mutect2;Vardict	2	0.041	373	0	0	NA	exonic	Olfr1242	nonsynonymous SNV	Olfr1242:NM_146968:exon1:c.C665T:p.S222F	2qE1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.193439862	3	1	AGA	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	89591025	PW1826tail	autochthonous	sgMsh2 aCD4/8	89591025	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	308	0	0	NA	exonic	Olfr1246	frameshift deletion	Olfr1246:NM_146792:exon1:c.89delT:p.L30Cfs*5	2qE1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.844530128	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1826T3	chr2	118712465	PW1826tail	autochthonous	sgMsh2 aCD4/8	118712465	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	130	10	0	0	exonic	Plcb2	nonsynonymous SNV	"Plcb2:NM_001290790:exon21:c.A2267G:p.H756R,Plcb2:NM_177568:exon22:c.A2336G:p.H779R"	2qE5	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.235902271	3	0.9999949	GTG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	142712726	PW1826tail	autochthonous	sgMsh2 aCD4/8	142712726	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	143	33	0	0	exonic	Kif16b	synonymous SNV	"Kif16b:NM_001081133:exon19:c.C2151T:p.H717H,Kif16b:NM_001355123:exon20:c.C2184T:p.H728H"	2qG1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.500112813	2	0.9999967	CGT	synonymous	NA	NA	NA	NA
PW1826T3	chr2	158201035	PW1826tail	autochthonous	sgMsh2 aCD4/8	158201035	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	137	9	0	0	exonic	D630003M21Rik	nonsynonymous SNV	"D630003M21Rik:NM_001131021:exon12:c.G2584A:p.A862T,D630003M21Rik:NM_177657:exon12:c.G2584A:p.A862T"	2qH1	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.731297039	2	0.7823637	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr2	164821137	PW1826tail	autochthonous	sgMsh2 aCD4/8	164821137	G	C	SNV	Mutect2;Vardict	2	0.035	148	32	0	0	exonic	Zswim3	nonsynonymous SNV	Zswim3:NM_178375:exon2:c.G1536C:p.E512D	2qH3	chr2-4610906-181631782	5	3	2	0.785	3.703665647	POOR GOF (77%)	1	0.165131589	3	1.80E-09	AGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr3	5241884	PW1826tail	autochthonous	sgMsh2 aCD4/8	5241884	A	-	Deletion	Mutect2;Vardict	2	0.029	215	0	0	NA	exonic	Zfhx4	frameshift deletion	"Zfhx4:NM_001368671:exon2:c.169delA:p.S58Vfs*50,Zfhx4:NM_030708:exon2:c.169delA:p.S58Vfs*50"	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1826T3	chr3	5400371	PW1826tail	autochthonous	sgMsh2 aCD4/8	5400371	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	143	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.C5666A:p.P1889H,Zfhx4:NM_030708:exon10:c.C5588A:p.P1863H"	3qA1	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr3	30936699	PW1826tail	autochthonous	sgMsh2 aCD4/8	30936699	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	208	20	1	0.05	exonic	Phc3	synonymous SNV	"Phc3:NM_001165955:exon7:c.C1233A:p.T411T,Phc3:NM_001165954:exon8:c.C1368A:p.T456T,Phc3:NM_153421:exon8:c.C1332A:p.T444T"	3qA3	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.141541362	3	1.00E-09	CGG	synonymous	NA	NA	NA	NA
PW1826T3	chr3	84594268	PW1826tail	autochthonous	sgMsh2 aCD4/8	84594268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	250	0	0	NA	exonic	Tigd4	nonsynonymous SNV	Tigd4:NM_207278:exon1:c.A491G:p.Q164R	3qF1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.533139131	2	1.14E-09	CAA	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr3	95765543	PW1826tail	autochthonous	sgMsh2 aCD4/8	95765543	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	176	73	4	0.054794521	exonic	Rprd2	synonymous SNV	"Rprd2:NM_001368179:exon10:c.C2415T:p.D805D,Rprd2:NM_001081293:exon11:c.C2547T:p.D849D,Rprd2:NM_001368178:exon11:c.C2493T:p.D831D"	3qF2.1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.330263179	3	0.9905913	CGT	synonymous	NA	NA	NA	NA
PW1826T3	chr3	98162849	PW1826tail	autochthonous	sgMsh2 aCD4/8	98162849	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	296	0	0	NA	exonic	Adam30	nonsynonymous SNV	Adam30:NM_027665:exon1:c.G1997A:p.G666D	3qF2.2	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.193439862	3	1.00E-09	GGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr3	107037883	PW1826tail	autochthonous	sgMsh2 aCD4/8	107037883	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.201	127	5	0	0	exonic	Kcna3	frameshift deletion	Kcna3:NM_008418:exon1:c.1461delG:p.G489fs*0	3qF2.3	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.948327127	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1826T3	chr3	116422618	PW1826tail	autochthonous	sgMsh2 aCD4/8	116422618	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.194	190	22	0	0	exonic	Cdc14a	frameshift insertion	"Cdc14a:NM_001080818:exon2:c.88dupA:p.S30Kfs*16,Cdc14a:NM_001173553:exon2:c.88dupA:p.S30Kfs*16,Cdc14a:NM_001378993:exon2:c.88dupA:p.S30Kfs*16"	3qG1	chr3-10385869-159911278	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.91530081	NA	NA	GCT	frameshift	T	5	TTTTT	1
PW1826T3	chr4	43654546	PW1826tail	autochthonous	sgMsh2 aCD4/8	43654546	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	277	236	18	0.076271186	exonic	Hint2	stopgain	Hint2:NM_026871:exon4:c.C367T:p.Q123X	4qA5	chr4-5799947-156233518	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.542575222	2	1.03E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr4	107880906	PW1826tail	autochthonous	sgMsh2 aCD4/8	107880906	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	181	930	150	0.161290323	exonic	Magoh	synonymous SNV	Magoh:NM_001282737:exon2:c.C102T:p.Y34Y	4qC7	chr4-5799947-156233518	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	2.71E-08	ACG	synonymous	NA	NA	NA	NA
PW1826T3	chr4	116817084	PW1826tail	autochthonous	sgMsh2 aCD4/8	116817084	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	91	6	0	0	exonic	Mutyh	synonymous SNV	"Mutyh:NM_001316747:exon8:c.C648T:p.C216C,Mutyh:NM_133250:exon10:c.C831T:p.C277C,Mutyh:NM_001159581:exon11:c.C831T:p.C277C"	4qD1	chr4-5799947-156233518	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.212312043	3	0.9999669	GCC	synonymous	NA	NA	NA	NA
PW1826T3	chr4	144273004	PW1826tail	autochthonous	sgMsh2 aCD4/8	144273004	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	418	0	0	NA	exonic	Pramel5	nonsynonymous SNV	Pramel5:NM_001085418:exon3:c.C512A:p.A171D	4qE1	chr4-5799947-156233518	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	1	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr5	5542272	PW1826tail	autochthonous	sgMsh2 aCD4/8	5542272	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	69	3	0	0	exonic	Gtpbp10	nonsynonymous SNV	Gtpbp10:NM_001357031:exon9:c.C931T:p.R311C	5qA1	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.948327127	1	0.9966246	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr5	34610589	PW1826tail	autochthonous	sgMsh2 aCD4/8	34610589	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.187	192	67	3	0.044776119	exonic	Add1	stopgain	"Add1:NM_001024458:exon6:c.C691T:p.R231X,Add1:NM_001102444:exon6:c.C691T:p.R231X,Add1:NM_001331081:exon6:c.C691T:p.R231X,Add1:NM_001331082:exon6:c.C691T:p.R231X,Add1:NM_001331083:exon6:c.C691T:p.R231X,Add1:NM_001331084:exon6:c.C691T:p.R231X,Add1:NM_001331085:exon6:c.C691T:p.R231X,Add1:NM_001331086:exon6:c.C691T:p.R231X,Add1:NM_001331087:exon6:c.C691T:p.R231X,Add1:NM_013457:exon6:c.C691T:p.R231X,Add1:NM_001331080:exon7:c.C691T:p.R231X"	5qB2	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.882274492	1	0.9999228	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr5	38231290	PW1826tail	autochthonous	sgMsh2 aCD4/8	38231290	A	-	Deletion	Strelka2;Vardict	2	0.1667	114	49	3	0.06122449	exonic	Lyar	frameshift deletion	Lyar:NM_025281:exon7:c.877delA:p.K295Rfs*1	5qB3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.78649817	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW1826T3	chr5	44014795	PW1826tail	autochthonous	sgMsh2 aCD4/8	44014795	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	354	156	8	0.051282051	exonic	Prom1	nonsynonymous SNV	"Prom1:NM_001163581:exon14:c.G1763T:p.G588V,Prom1:NM_001163582:exon14:c.G1778T:p.G593V,Prom1:NM_001163578:exon15:c.G1853T:p.G618V,Prom1:NM_001163583:exon15:c.G1853T:p.G618V,Prom1:NM_001163584:exon15:c.G1853T:p.G618V,Prom1:NM_001163585:exon16:c.G1880T:p.G627V,Prom1:NM_008935:exon16:c.G1853T:p.G618V,Prom1:NM_001163577:exon17:c.G1880T:p.G627V"	5qB3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.297236861	3	0.9999999	CCC	nonsynonymous	TATC	8	TATCTATC	NA
PW1826T3	chr5	146959194	PW1826tail	autochthonous	sgMsh2 aCD4/8	146959194	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	185	103	4	0.038834951	exonic	Mtif3	nonsynonymous SNV	"Mtif3:NM_001256102:exon2:c.G82A:p.A28T,Mtif3:NM_001359467:exon2:c.G82A:p.A28T,Mtif3:NM_029581:exon2:c.G82A:p.A28T,Mtif3:NM_001256100:exon3:c.G82A:p.A28T,Mtif3:NM_001256101:exon3:c.G82A:p.A28T"	5qG3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.136823317	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr5	150401625	PW1826tail	autochthonous	sgMsh2 aCD4/8	150401625	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	150	1	0	0	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon28:c.G3506A:p.G1169D	5qG3	chr5-3582301-150560224	4	3	1	0.785	3.703665647	POOR GOF (77%)	1	0.179285726	3	3.64E-09	GGC	nonsynonymous	GTGCT	13	GTGCTGTGCTGTG	NA
PW1826T3	chr6	4619787	PW1826tail	autochthonous	sgMsh2 aCD4/8	4619787	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	117	32	9	0.28125	exonic	Casd1	synonymous SNV	"Casd1:NM_001379143:exon7:c.C531T:p.S177S,Casd1:NM_145398:exon7:c.C531T:p.S177S"	6qA1	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.745451175	2	0.5807513	GCG	synonymous	NA	NA	NA	NA
PW1826T3	chr6	21216887	PW1826tail	autochthonous	sgMsh2 aCD4/8	21216887	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	175	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.G589A:p.V197I	6qA2	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	1	4.64E-08	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr6	57925921	PW1826tail	autochthonous	sgMsh2 aCD4/8	57925921	G	A	SNV	Mutect2;Vardict	2	0.025	306	0	0	NA	exonic	Vmn1r23	synonymous SNV	Vmn1r23:NM_134179:exon1:c.C871T:p.L291L	6qB3	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.117951135	3	1	AGC	synonymous	NA	NA	NA	NA
PW1826T3	chr6	90035959	PW1826tail	autochthonous	sgMsh2 aCD4/8	90035959	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.239	336	0	0	NA	exonic	Vmn1r48	nonsynonymous SNV	Vmn1r48:NM_053218:exon1:c.C883T:p.H295Y	6qD1	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	1	1.00E-09	TGT	nonsynonymous	T	5	TTTTT	NA
PW1826T3	chr6	103665940	PW1826tail	autochthonous	sgMsh2 aCD4/8	103665940	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	155	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon7:c.C638T:p.T213M	6qE1	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.231184225	3	0.9999996	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr6	118697749	PW1826tail	autochthonous	sgMsh2 aCD4/8	118697749	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	106	0	0	NA	exonic	Cacna1c	nonsynonymous SNV	"Cacna1c:NM_001290335:exon9:c.G836A:p.R279H,Cacna1c:NM_001159533:exon12:c.G1553A:p.R518H,Cacna1c:NM_001159534:exon12:c.G1553A:p.R518H,Cacna1c:NM_001159535:exon12:c.G1553A:p.R518H,Cacna1c:NM_001255997:exon12:c.G1643A:p.R548H,Cacna1c:NM_001255999:exon12:c.G1643A:p.R548H,Cacna1c:NM_009781:exon12:c.G1643A:p.R548H,Cacna1c:NM_001255998:exon13:c.G1718A:p.R573H,Cacna1c:NM_001256000:exon13:c.G1628A:p.R543H,Cacna1c:NM_001256001:exon13:c.G1628A:p.R543H,Cacna1c:NM_001256002:exon13:c.G1628A:p.R543H"	6qF1	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.707706812	2	0.8607299	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr6	143031572	PW1826tail	autochthonous	sgMsh2 aCD4/8	143031572	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	265	55	2	0.036363636	exonic	C2cd5	synonymous SNV	"C2cd5:NM_001286578:exon16:c.G1503A:p.P501P,C2cd5:NM_001109688:exon17:c.G2070A:p.P690P,C2cd5:NM_001362115:exon17:c.G2097A:p.P699P,C2cd5:NM_029081:exon17:c.G2097A:p.P699P,C2cd5:NM_029897:exon17:c.G2097A:p.P699P,C2cd5:NM_001362114:exon18:c.G2136A:p.P712P,C2cd5:NM_001362117:exon18:c.G2103A:p.P701P,C2cd5:NM_001362118:exon18:c.G1242A:p.P414P,C2cd5:NM_001362113:exon19:c.G2169A:p.P723P,C2cd5:NM_001362116:exon19:c.G2169A:p.P723P"	6qG3	chr6-3994124-149055161	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.188721816	3	1.00E-09	GCG	synonymous	GGGGC	11	GGGGCGGGGCG	NA
PW1826T3	chr7	6480331	PW1826tail	autochthonous	sgMsh2 aCD4/8	6480331	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	245	0	0	NA	exonic	Olfr5	nonsynonymous SNV	Olfr5:NM_146914:exon2:c.A824C:p.N275T	7qA1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.910582764	1	0.9999996	GTT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	6570400	PW1826tail	autochthonous	sgMsh2 aCD4/8	6570400	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	279	0	0	NA	exonic	Olfr1350	synonymous SNV	Olfr1350:NM_146389:exon1:c.T408C:p.S136S	7qA1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.212312043	3	1.00E-09	CTC	synonymous	NA	NA	NA	NA
PW1826T3	chr7	28544266	PW1826tail	autochthonous	sgMsh2 aCD4/8	28544266	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	37	0	0	NA	exonic	Nccrp1	nonsynonymous SNV	Nccrp1:NM_001081115:exon6:c.C667T:p.H223Y	7qB1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9844976	TGG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	39407939	PW1826tail	autochthonous	sgMsh2 aCD4/8	39407939	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.464	195	0	0	NA	exonic	Gm5114	nonsynonymous SNV	Gm5114:NM_177890:exon3:c.G2255T:p.R752I	7qB3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	2	1	1	8.15E-09	TCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	45049496	PW1826tail	autochthonous	sgMsh2 aCD4/8	45049496	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.6	19	7	6	0.857142857	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon4:c.T994C:p.L332L	7qB3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	2	1	1	0.9231994	AAA	synonymous	NA	NA	NA	NA
PW1826T3	chr7	45623332	PW1826tail	autochthonous	sgMsh2 aCD4/8	45623332	A	-	Deletion	Mutect2;Vardict	2	0.045	307	0	0	NA	exonic	Izumo1	frameshift deletion	Izumo1:NM_001018013:exon3:c.274delA:p.K92Rfs*2	7qB3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.212312043	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1826T3	chr7	76766404	PW1826tail	autochthonous	sgMsh2 aCD4/8	76766404	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	123	0	0	NA	exonic	Agbl1	frameshift deletion	Agbl1:NM_001199224:exon21:c.2928delG:p.V978Ffs*28	7qD1	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.410469951	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1826T3	chr7	85738051	PW1826tail	autochthonous	sgMsh2 aCD4/8	85738051	C	G	SNV	Mutect2;Vardict	2	0.039	360	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon6:c.G2289C:p.R763S	7qD3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.184003771	3	1	TCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	85738079	PW1826tail	autochthonous	sgMsh2 aCD4/8	85738079	G	T	SNV	Mutect2;Vardict	2	0.036	435	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon6:c.C2261A:p.T754K	7qD3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.169849635	3	1	TGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	101508065	PW1826tail	autochthonous	sgMsh2 aCD4/8	101508065	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	88	14	1	0.071428571	exonic	Pde2a	nonsynonymous SNV	"Pde2a:NM_001143849:exon22:c.G1945A:p.A649T,Pde2a:NM_001008548:exon23:c.G1966A:p.A656T,Pde2a:NM_001143848:exon23:c.G1978A:p.A660T,Pde2a:NM_001243757:exon23:c.G1909A:p.A637T,Pde2a:NM_001243758:exon23:c.G1996A:p.A666T"	7qE2	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.556729358	2	0.9987328	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	104644817	PW1826tail	autochthonous	sgMsh2 aCD4/8	104644817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	552	1	0	0	exonic	Olfr658	nonsynonymous SNV	Olfr658:NM_147049:exon2:c.A554G:p.H185R	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.11323309	3	1	GTG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	104893128	PW1826tail	autochthonous	sgMsh2 aCD4/8	104893128	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	474	0	0	NA	exonic	Olfr666	nonsynonymous SNV	Olfr666:NM_147096:exon1:c.C499T:p.R167C	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	2	1	1	1	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	108893755	PW1826tail	autochthonous	sgMsh2 aCD4/8	108893755	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	509	0	0	NA	exonic	Olfr519	synonymous SNV	Olfr519:NM_207160:exon1:c.T651C:p.S217S	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.108515044	3	1	AAG	synonymous	NA	NA	NA	NA
PW1826T3	chr7	109766585	PW1826tail	autochthonous	sgMsh2 aCD4/8	109766585	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.265	139	2	2	1	exonic	Nrip3	nonsynonymous SNV	Nrip3:NM_020610:exon2:c.A224C:p.K75T	7qE3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	125571570	PW1826tail	autochthonous	sgMsh2 aCD4/8	125571570	C	A	SNV	Mutect2;Vardict	2	0.043	122	342	8	0.023391813	exonic	Il4ra	nonsynonymous SNV	Il4ra:NM_001008700:exon7:c.C653A:p.P218H	7qF3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.202875953	3	0.9999994	CCT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr7	129323368	PW1826tail	autochthonous	sgMsh2 aCD4/8	129323368	G	A	SNV	Mutect2;Vardict	2	0.049	96	0	0	NA	exonic	Plpp4	nonsynonymous SNV	Plpp4:NM_001080963:exon5:c.G326A:p.R109H	7qF3	chr7-4692757-143062472	4	2	2	0.785	3.703665647	POOR GOF (77%)	1	0.231184225	3	0.9999305	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr8	66512650	PW1826tail	autochthonous	sgMsh2 aCD4/8	66512650	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.023	234	0	0	NA	exonic	Tktl2	stopgain	"Tktl2:NM_001271574:exon1:c.C859T:p.R287X,Tktl2:NM_028927:exon1:c.C859T:p.R287X"	8qB3.1	chr8-3153818-127409529	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.108515044	3	1	CCG	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr9	38108706	PW1826tail	autochthonous	sgMsh2 aCD4/8	38108706	G	A	SNV	Mutect2;Vardict	2	0.041	269	0	0	NA	exonic	Olfr888	nonsynonymous SNV	Olfr888:NM_146424:exon1:c.G19A:p.A7T	9qA4	chr9-3342997-124127352	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	0.193439862	3	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr9	48657167	PW1826tail	autochthonous	sgMsh2 aCD4/8	48657167	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	43	9	4	0.444444444	exonic	Zbtb16	nonsynonymous SNV	"Zbtb16:NM_001033324:exon7:c.C1997T:p.T666M,Zbtb16:NM_001364543:exon7:c.C1997T:p.T666M"	9qA5.3	chr9-3342997-124127352	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.991038	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T3	chr9	83845938	PW1826tail	autochthonous	sgMsh2 aCD4/8	83845938	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	156	2	0	0	exonic	Ttk	nonsynonymous SNV	"Ttk:NM_001110265:exon9:c.G910A:p.A304T,Ttk:NM_001284272:exon9:c.G910A:p.A304T,Ttk:NM_009445:exon9:c.G910A:p.A304T"	9qE2	chr9-3342997-124127352	3	2	1	0.785	3.703665647	POOR GOF (77%)	1	1	1	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chrX	17224048	PW1826tail	autochthonous	sgMsh2 aCD4/8	17224048	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	62	0	0	NA	exonic	Efhc2	nonsynonymous SNV	Efhc2:NM_028916:exon7:c.G863A:p.G288D	XqA1.2	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T3	chrX	162438713	PW1826tail	autochthonous	sgMsh2 aCD4/8	162438713	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	61	4	0	0	exonic	Reps2	synonymous SNV	"Reps2:NM_001359103:exon13:c.G1470A:p.E490E,Reps2:NM_001359102:exon14:c.G1521A:p.E507E,Reps2:NM_001359104:exon14:c.G1137A:p.E379E,Reps2:NM_001290633:exon16:c.G1704A:p.E568E,Reps2:NM_178256:exon16:c.G1707A:p.E569E"	XqF4	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	NA	NA	GCT	synonymous	NA	NA	NA	NA
PW1826T3	chrX	164232216	PW1826tail	autochthonous	sgMsh2 aCD4/8	164232216	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.475	170	11	5	0.454545455	exonic	Bmx	nonsynonymous SNV	Bmx:NM_009759:exon8:c.A749G:p.H250R	XqF5	NA	NA	NA	NA	0.785	3.703665647	POOR GOF (77%)	NA	NA	NA	NA	GTG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr10	68097821	PW1826tail	autochthonous	sgMsh2 aCD4/8	68097821	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.337	104	58	28	0.482758621	exonic	Arid5b	synonymous SNV	Arid5b:NM_023598:exon10:c.C2250T:p.S750S	10qB5.2	chr10-4403017-130453386	3	2	1	0.782	3.94452241	NA	1	1	1	0.9999662	CGG	synonymous	NA	NA	NA	NA
PW1826T7	chr11	7130358	PW1826tail	autochthonous	sgMsh2 aCD4/8	7130358	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	90	0	0	NA	exonic	Adcy1	nonsynonymous SNV	Adcy1:NM_009622:exon5:c.C1100G:p.A367G	11qA1	chr11-3133205-69579350	3	2	1	0.782	3.94452241	NA	1	0.247163169	3	0.9997807	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr11	50853238	PW1826tail	autochthonous	sgMsh2 aCD4/8	50853238	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	55	0	0	NA	exonic	Grm6	nonsynonymous SNV	Grm6:NM_173372:exon3:c.A535G:p.T179A	11qB1.3	chr11-3133205-69579350	3	2	1	0.782	3.94452241	NA	1	0.388399265	3	0.8209818	CAC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr11	78963541	PW1826tail	autochthonous	sgMsh2 aCD4/8	78963541	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	86	152	0	0	exonic	Lgals9	nonsynonymous SNV	"Lgals9:NM_001159301:exon10:c.G823A:p.V275M,Lgals9:NM_010708:exon11:c.G916A:p.V306M"	11qB5	chr11-69590981-121956809	3	2	1	0.782	3.94452241	NA	1	0.257251462	3	0.9995225	ACC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr11	88834689	PW1826tail	autochthonous	sgMsh2 aCD4/8	88834689	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.362	77	82	50	0.609756098	exonic	Akap1	nonsynonymous SNV	"Akap1:NM_001042541:exon8:c.C2335A:p.L779I,Akap1:NM_009648:exon8:c.C2335A:p.L779I"	11qC	chr11-69590981-121956809	3	2	1	0.782	3.94452241	NA	1	1	1	0.9996213	AGG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr11	120820065	PW1826tail	autochthonous	sgMsh2 aCD4/8	120820065	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.42	84	91	49	0.538461538	exonic	Fasn	synonymous SNV	Fasn:NM_007988:exon7:c.G858A:p.S286S	11qE2	chr11-69590981-121956809	3	2	1	0.782	3.94452241	NA	2	1	1	0.9997976	GCG	synonymous	NA	NA	NA	NA
PW1826T7	chr11	121055850	PW1826tail	autochthonous	sgMsh2 aCD4/8	121055850	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.275	114	67	5	0.074626866	exonic	Sectm1b	frameshift deletion	Sectm1b:NM_026907:exon4:c.218delA:p.K73Rfs*30	11qE2	chr11-69590981-121956809	3	2	1	0.782	3.94452241	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1826T7	chr12	13352849	PW1826tail	autochthonous	sgMsh2 aCD4/8	13352849	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	381	14	2	0.142857143	exonic	Nbas	synonymous SNV	Nbas:NM_027706:exon22:c.C2403T:p.C801C	12qA1.1	chr12-3237715-119465464	7	4	3	0.782	3.94452241	NA	1	0.343001949	3	0.9999996	GCG	synonymous	NA	NA	NA	NA
PW1826T7	chr12	21325539	PW1826tail	autochthonous	sgMsh2 aCD4/8	21325549	CCTGCAGACGA	-	Deletion	Mutect2;Vardict	2	0.051	110	103	1	0.009708738	exonic	Adam17	frameshift deletion	"Adam17:NM_001291871:exon19:c.1497_1507del:p.R500Pfs*35,Adam17:NM_009615:exon19:c.2211_2221del:p.R738Pfs*35,Adam17:NM_001277266:exon20:c.2268_2278del:p.R757Pfs*35"	12qA1.3	chr12-3237715-119465464	7	4	3	0.782	3.94452241	NA	1	0.257251462	NA	NA	GCC	frameshift	NA	NA	NA	-11
PW1826T7	chr12	76094444	PW1826tail	autochthonous	sgMsh2 aCD4/8	76094444	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	79	75	1	0.013333333	exonic	Syne2	nonsynonymous SNV	Syne2:NM_001005510:exon101:c.C18326T:p.A6109V	12qC3	chr12-3237715-119465464	7	4	3	0.782	3.94452241	NA	1	0.403531704	3	0.7785119	GCC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr12	89260398	PW1826tail	autochthonous	sgMsh2 aCD4/8	89260398	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	170	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon6:c.C802T:p.R268C,Nrxn3:NM_001198587:exon7:c.C1921T:p.R641C"	12qD3	chr12-3237715-119465464	7	4	3	0.782	3.94452241	NA	1	0.196721706	3	4.17E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr13	23233006	PW1826tail	autochthonous	sgMsh2 aCD4/8	23233006	-	A	Insertion	Strelka2;Vardict	2	0.1333	165	0	0	NA	exonic	Vmn1r222	frameshift insertion	Vmn1r222:NM_134240:exon1:c.35dupT:p.F13Lfs*25	13qA3.1	chr13-6560583-119495179	4	2	2	0.782	3.94452241	NA	1	0.672384702	NA	NA	AGA	frameshift	A	8	AAAAAAAA	1
PW1826T7	chr15	102088999	PW1826tail	autochthonous	sgMsh2 aCD4/8	102089000	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.446	226	433	35	0.080831409	exonic	Eif4b	frameshift deletion	Eif4b:NM_145625:exon8:c.948_949del:p.R318Gfs*1	15qF2	chr15-3280572-103347537	5	3	2	0.782	3.94452241	NA	3	1	NA	NA	ACT	frameshift	NA	NA	NA	-2
PW1826T7	chr16	55982309	PW1826tail	autochthonous	sgMsh2 aCD4/8	55982309	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.328	111	13	6	0.461538462	exonic	Zbtb11	synonymous SNV	Zbtb11:NM_173026:exon3:c.G681A:p.A227A	16qC1.1	chr16-4630421-97451700	3	2	1	0.782	3.94452241	NA	1	1	1	0.9999819	CGC	synonymous	NA	NA	NA	NA
PW1826T7	chr17	10213363	PW1826tail	autochthonous	sgMsh2 aCD4/8	10213363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	179	147	11	0.074829932	exonic	Qk	synonymous SNV	Qk:NM_001159517:exon7:c.C1005T:p.D335D	17qA1	chr17-3077483-90208269	4	2	2	0.782	3.94452241	NA	1	0.469105606	2	0.9824245	GGT	synonymous	NA	NA	NA	NA
PW1826T7	chr17	23843961	PW1826tail	autochthonous	sgMsh2 aCD4/8	23843961	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	107	1	0	0	exonic	Prss41	synonymous SNV	Prss41:NM_027644:exon2:c.G84A:p.A28A	17qA3.3	chr17-3077483-90208269	4	2	2	0.782	3.94452241	NA	2	1	1	0.9999742	CCG	synonymous	NA	NA	NA	NA
PW1826T7	chr17	35868565	PW1826tail	autochthonous	sgMsh2 aCD4/8	35868565	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.389	17	31	4	0.129032258	exonic	Ppp1r18	frameshift deletion	"Ppp1r18:NM_175242:exon1:c.1331delC:p.R446Afs*97,Ppp1r18:NM_001146710:exon2:c.1331delC:p.R446Afs*97,Ppp1r18:NM_001146711:exon2:c.1331delC:p.R446Afs*97,Ppp1r18:NM_001378889:exon2:c.1460delC:p.R489Afs*97"	17qB1	chr17-3077483-90208269	4	2	2	0.782	3.94452241	NA	2	1	NA	NA	GCC	frameshift	G	5	GGGGG	-1
PW1826T7	chr19	3921240	PW1826tail	autochthonous	sgMsh2 aCD4/8	3921240	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	106	46	3	0.065217391	exonic	Aldh3b1	nonsynonymous SNV	Aldh3b1:NM_026316:exon5:c.G423T:p.E141D	19qA	chr19-3466535-60529043	3	2	1	0.782	3.94452241	NA	1	0.842372433	1	0.9732017	TCT	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr2	22323667	PW1826tail	autochthonous	sgMsh2 aCD4/8	22323667	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	308	0	0	NA	exonic	Myo3a	synonymous SNV	Myo3a:NM_148413:exon10:c.G1071T:p.L357L	2qA3	chr2-4610906-181511691	5	3	2	0.782	3.94452241	NA	1	0.171500974	3	1	TGG	synonymous	NA	NA	NA	NA
PW1826T7	chr2	24216657	PW1826tail	autochthonous	sgMsh2 aCD4/8	24216657	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.405	81	0	0	NA	exonic	Il1f6	nonsynonymous SNV	Il1f6:NM_019450:exon4:c.G252T:p.Q84H	2qA3	chr2-4610906-181511691	5	3	2	0.782	3.94452241	NA	2	1	1	0.9997352	AGC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr2	31792334	PW1826tail	autochthonous	sgMsh2 aCD4/8	31792334	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	124	109	4	0.036697248	exonic	Abl1	synonymous SNV	"Abl1:NM_001112703:exon7:c.G1239A:p.T413T,Abl1:NM_001283045:exon7:c.G1167A:p.T389T,Abl1:NM_009594:exon7:c.G1182A:p.T394T,Abl1:NM_001283046:exon8:c.G1164A:p.T388T,Abl1:NM_001283047:exon8:c.G474A:p.T158T"	2qB	chr2-4610906-181511691	5	3	2	0.782	3.94452241	NA	1	0.307692925	3	0.9994679	CGG	synonymous	NA	NA	NA	NA
PW1826T7	chr2	180179726	PW1826tail	autochthonous	sgMsh2 aCD4/8	180179726	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.07	110	144	1	0.006944444	exonic	Lama5	nonsynonymous SNV	Lama5:NM_001081171:exon67:c.G9119A:p.R3040H	2qH4	chr2-4610906-181511691	5	3	2	0.782	3.94452241	NA	1	0.353090241	3	0.9859851	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr4	128618087	PW1826tail	autochthonous	sgMsh2 aCD4/8	128618087	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.467	45	0	0	NA	exonic	Tlr12	frameshift deletion	Tlr12:NM_205823:exon1:c.369delT:p.F123Lfs*18	4qD2.2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	2	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1826T7	chr4	156218971	PW1826tail	autochthonous	sgMsh2 aCD4/8	156218971	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	82	7	7	1	exonic	Perm1	synonymous SNV	Perm1:NM_172417:exon2:c.A1971G:p.A657A	4qE2	chr4-3834436-156218971	3	2	1	0.782	3.94452241	NA	1	1	1	0.9997579	CAG	synonymous	NA	NA	NA	NA
PW1826T7	chr5	118237433	PW1826tail	autochthonous	sgMsh2 aCD4/8	118237433	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.4	14	0	0	NA	exonic	Rnft2	nonsynonymous SNV	"Rnft2:NM_001109902:exon4:c.G247A:p.G83S,Rnft2:NM_172998:exon5:c.G250A:p.G84S"	5qF	chr5-3582301-151648293	4	2	2	0.782	3.94452241	NA	2	1	1	0.09593273	CCC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr6	41356692	PW1826tail	autochthonous	sgMsh2 aCD4/8	41356692	G	A	SNV	Mutect2;Vardict	2	0.034	321	0	0	NA	exonic	Try10	nonsynonymous SNV	Try10:NM_001038996:exon3:c.G370A:p.A124T	6qB1	chr6-3494310-113068119	4	2	2	0.782	3.94452241	NA	1	0.171500974	3	1	GGC	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr6	123393948	PW1826tail	autochthonous	sgMsh2 aCD4/8	123393948	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	256	0	0	NA	exonic	Vmn2r20	synonymous SNV	Vmn2r20:NM_001104634:exon5:c.C1572T:p.S524S	6qF2	chr6-113104747-145247059	6	5	1	0.782	3.94452241	NA	1	0.721312921	2	0.9958678	AGC	synonymous	NA	NA	NA	NA
PW1826T7	chr7	33737361	PW1826tail	autochthonous	sgMsh2 aCD4/8	33737361	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.606	127	0	0	NA	exonic	Scgb2b24	frameshift deletion	Scgb2b24:NM_177446:exon3:c.325delA:p.I109Yfs*6	7qB1	chr7-3894480-143639805	4	3	1	0.782	3.94452241	NA	3	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW1826T7	chr7	45049496	PW1826tail	autochthonous	sgMsh2 aCD4/8	45049496	A	G	SNV	Mutect2;Vardict	2	0.308	15	4	1	0.25	exonic	Prr12	synonymous SNV	Prr12:NM_175022:exon4:c.T994C:p.L332L	7qB3	chr7-3894480-143639805	4	3	1	0.782	3.94452241	NA	2	1	1	0.9091919	AAA	synonymous	NA	NA	NA	NA
PW1826T7	chr7	103329245	PW1826tail	autochthonous	sgMsh2 aCD4/8	103329245	T	-	Deletion	Mutect2;Vardict	2	0.024	369	0	0	NA	exonic	Olfr598	frameshift deletion	Olfr598:NM_001011793:exon1:c.758delT:p.L255fs*0	7qE3	chr7-3894480-143639805	4	3	1	0.782	3.94452241	NA	1	0.121059511	NA	NA	GTT	frameshift	T	6	TTTTTT	-1
PW1826T7	chr7	141857898	PW1826tail	autochthonous	sgMsh2 aCD4/8	141857898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	250	5	1	0.2	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon31:c.C4580T:p.A1527V	7qF5	chr7-3894480-143639805	4	3	1	0.782	3.94452241	NA	2	1	1	1.07E-09	GCG	nonsynonymous	CGAC	8	CGACCGAC	NA
PW1826T7	chr7	142082470	PW1826tail	autochthonous	sgMsh2 aCD4/8	142082470	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.5	17	2	2	1	exonic	Dusp8	frameshift deletion	Dusp8:NM_008748:exon7:c.1382delC:p.P461Rfs*14	7qF5	chr7-3894480-143639805	4	3	1	0.782	3.94452241	NA	2	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW1826T7	chr8	13878253	PW1826tail	autochthonous	sgMsh2 aCD4/8	13878253	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	42	13	4	0.307692308	exonic	Champ1	nonsynonymous SNV	"Champ1:NM_001363455:exon2:c.C410T:p.T137M,Champ1:NM_181854:exon2:c.C410T:p.T137M"	8qA1.1	chr8-3153818-126965210	5	3	2	0.782	3.94452241	NA	3	1	1	0.991386	ACG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr8	40680166	PW1826tail	autochthonous	sgMsh2 aCD4/8	40680166	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.44	184	0	0	NA	exonic	Adam24	frameshift deletion	Adam24:NM_010086:exon2:c.672delA:p.N227Ifs*4	8qA4	chr8-3153818-126965210	5	3	2	0.782	3.94452241	NA	3	1	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
PW1826T7	chr8	93976060	PW1826tail	autochthonous	sgMsh2 aCD4/8	93976060	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	178	392	18	0.045918367	exonic	Amfr	nonsynonymous SNV	Amfr:NM_011787:exon11:c.C1477T:p.R493W	8qC5	chr8-3153818-126965210	5	3	2	0.782	3.94452241	NA	1	0.317781217	3	0.9999314	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr9	6288603	PW1826tail	autochthonous	sgMsh2 aCD4/8	6288603	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	114	17	5	0.294117647	exonic	Pdgfd	stopgain	"Pdgfd:NM_001357397:exon2:c.C238T:p.Q80X,Pdgfd:NM_001357398:exon2:c.C256T:p.Q86X,Pdgfd:NM_027924:exon2:c.C256T:p.Q86X"	9qA1	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	2	1	1	0.9999862	CCA	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr9	70124956	PW1826tail	autochthonous	sgMsh2 aCD4/8	70124956	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	148	4	0	0	exonic	Fam81a	nonsynonymous SNV	Fam81a:NM_029784:exon3:c.G253A:p.A85T	9qD	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	1	0.438840728	2	0.7185828	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chr9	96688584	PW1826tail	autochthonous	sgMsh2 aCD4/8	96688584	T	-	Deletion	Mutect2;Vardict	2	0.038	234	40	0	0	exonic	Zbtb38	frameshift deletion	"Zbtb38:NM_001359959:exon3:c.446delA:p.N149Mfs*36,Zbtb38:NM_001359960:exon3:c.446delA:p.N149Mfs*36,Zbtb38:NM_175537:exon3:c.446delA:p.N149Mfs*36"	9qE3.3	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	1	0.19167756	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1826T7	chr9	106719026	PW1826tail	autochthonous	sgMsh2 aCD4/8	106719026	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.434	84	12	7	0.583333333	exonic	Rad54l2	nonsynonymous SNV	Rad54l2:NM_030730:exon6:c.G712A:p.A238T	9qF1	chr9-6288603-124127224	4	2	2	0.782	3.94452241	NA	2	1	1	0.9997976	GCG	nonsynonymous	NA	NA	NA	NA
PW1826T7	chrX	17226535	PW1826tail	autochthonous	sgMsh2 aCD4/8	17226535	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.816	102	0	0	NA	exonic	Efhc2	stopgain	Efhc2:NM_028916:exon6:c.C661T:p.R221X	XqA1.2	NA	NA	NA	NA	0.782	3.94452241	NA	NA	NA	NA	NA	CGT	nonsynonymous	NA	NA	NA	NA
PW1826T7	chrX	89753104	PW1826tail	autochthonous	sgMsh2 aCD4/8	89753104	-	A	Insertion	Strelka2;Vardict	2	0.093	43	0	0	NA	exonic	4932429P05Rik	frameshift insertion	4932429P05Rik:NM_001085511:exon2:c.542dupA:p.L183Afs*11	XqC1	NA	NA	NA	NA	0.782	3.94452241	NA	NA	NA	NA	NA	TGA	frameshift	NA	NA	NA	1
PW1829T10	chr1	21424067	PW1829tail	autochthonous	sgMsh2 aCD4/8	21424067	G	T	SNV	Mutect2;Vardict	2	0.036	165	0	0	NA	exonic	Kcnq5	nonsynonymous SNV	"Kcnq5:NM_001310477:exon10:c.C1535A:p.T512N,Kcnq5:NM_023872:exon11:c.C1562A:p.T521N,Kcnq5:NM_001160139:exon12:c.C1619A:p.T540N"	1qA4	chr1-6770919-193352278	4	2	2	0.846	4.002714121	NA	1	0.17032826	3	0.9999977	GGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr1	28778261	PW1829tail	autochthonous	sgMsh2 aCD4/8	28778261	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	238	0	0	NA	exonic	Gm597	nonsynonymous SNV	Gm597:NM_001013750:exon2:c.G689A:p.R230H	1qA5	chr1-6770919-193352278	4	2	2	0.846	4.002714121	NA	1	0.222373007	3	0.9999972	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr1	139248512	PW1829tail	autochthonous	sgMsh2 aCD4/8	139248512	T	-	Deletion	Mutect2;Vardict	2	0.039	193	0	0	NA	exonic	Crb1	frameshift deletion	Crb1:NM_133239:exon6:c.1732delA:p.T578Pfs*3	1qE4	chr1-6770919-193352278	4	2	2	0.846	4.002714121	NA	1	0.184522282	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW1829T10	chr1	167630989	PW1829tail	autochthonous	sgMsh2 aCD4/8	167630989	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	65	10	1	0.1	exonic	Rxrg	nonsynonymous SNV	"Rxrg:NM_001159731:exon4:c.G281A:p.R94Q,Rxrg:NM_009107:exon5:c.G650A:p.R217Q"	1qH2.3	chr1-6770919-193352278	4	2	2	0.846	4.002714121	NA	1	0.373775905	3	5.40E-07	CGA	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr1	178870737	PW1829tail	autochthonous	sgMsh2 aCD4/8	178870737	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	exonic	Kif26b	nonsynonymous SNV	Kif26b:NM_001161665:exon8:c.G1792A:p.V598I	1qH4	chr1-6770919-193352278	4	2	2	0.846	4.002714121	NA	1	0.274417753	3	0.9839504	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr10	27347069	PW1829tail	autochthonous	sgMsh2 aCD4/8	27347069	C	T	SNV	Mutect2;Vardict	2	0.039	146	2	0	0	exonic	Lama2	nonsynonymous SNV	Lama2:NM_008481:exon9:c.G1220A:p.C407Y	10qA4	chr10-4453448-130453386	4	3	1	0.846	4.002714121	NA	1	0.184522282	3	0.9999779	GCA	nonsynonymous	TGGC	8	TGGCTGGC	NA
PW1829T10	chr10	80395168	PW1829tail	autochthonous	sgMsh2 aCD4/8	80395168	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	102	227	15	0.066079295	exonic	Mbd3	nonsynonymous SNV	"Mbd3:NM_001306143:exon3:c.C208T:p.R70W,Mbd3:NM_013595:exon3:c.C304T:p.R102W"	10qC1	chr10-4453448-130453386	4	3	1	0.846	4.002714121	NA	1	0.302805796	3	0.9262735	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr10	112092469	PW1829tail	autochthonous	sgMsh2 aCD4/8	112092469	A	-	Deletion	Mutect2;Vardict	2	0.063	173	0	0	NA	exonic	Glipr1l2	frameshift deletion	"Glipr1l2:NM_001347157:exon2:c.268delA:p.K91Nfs*9,Glipr1l2:NM_026223:exon2:c.268delA:p.K91Nfs*9"	10qD2	chr10-4453448-130453386	4	3	1	0.846	4.002714121	NA	1	0.298074456	NA	NA	GAA	frameshift	G	5	GGGGG	-1
PW1829T10	chr11	97343704	PW1829tail	autochthonous	sgMsh2 aCD4/8	97343704	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	20	0	0	NA	exonic	Gpr179	nonsynonymous SNV	Gpr179:NM_001081220:exon8:c.C1550T:p.T517I	11qD	chr11-69590981-121956809	4	2	2	0.846	4.002714121	NA	1	0.894223368	1	0.813512	GGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr11	102404538	PW1829tail	autochthonous	sgMsh2 aCD4/8	102404539	GA	TG	DBS	Mutect2;Vardict	2	0.117	37	230	7	0.030434783	exonic	Slc25a39	nonframeshift substitution	Slc25a39:NM_026542:exon8:c.604_605CA:p.S202H	11qD	chr11-69590981-121956809	4	2	2	0.846	4.002714121	NA	1	0.553566847	NA	NA	AGA	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr11	102675315	PW1829tail	autochthonous	sgMsh2 aCD4/8	102675315	A	-	Deletion	Mutect2;Vardict	2	0.072	107	0	0	NA	exonic	Meioc	frameshift deletion	Meioc:NM_001127576:exon5:c.1756delA:p.I588fs*0	11qE1	chr11-69590981-121956809	4	2	2	0.846	4.002714121	NA	1	0.340656521	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1829T10	chr12	79324984	PW1829tail	autochthonous	sgMsh2 aCD4/8	79324984	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	95	2	0	0	exonic	Rad51b	nonsynonymous SNV	"Rad51b:NM_001252562:exon6:c.A470G:p.E157G,Rad51b:NM_009014:exon6:c.A470G:p.E157G"	12qC3	chr12-3252726-119465464	4	2	2	0.846	4.002714121	NA	1	1	1	0.9999998	GAA	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr13	23581685	PW1829tail	autochthonous	sgMsh2 aCD4/8	23581685	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	230	6	0	0	exonic	H4c4	synonymous SNV	H4c4:NM_175654:exon1:c.G84A:p.Q28Q	13qA3.1	chr13-4065516-119495179	4	3	1	0.846	4.002714121	NA	2	1	1	1	AGG	synonymous	NA	NA	NA	NA
PW1829T10	chr13	100089429	PW1829tail	autochthonous	sgMsh2 aCD4/8	100089429	A	-	Deletion	Strelka2;Vardict	2	0.06	100	16	0	0	exonic	Bdp1	stopgain	Bdp1:NM_001081061:exon7:c.944delT:p.L315fs*0	13qD1	chr13-4065516-119495179	4	3	1	0.846	4.002714121	NA	1	0.283880434	NA	NA	TAA	nonsynonymous	A	8	AAAAAAAA	-1
PW1829T10	chr14	50619120	PW1829tail	autochthonous	sgMsh2 aCD4/8	50619120	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	69	0	0	NA	exonic	Olfr744	synonymous SNV	Olfr744:NM_001011738:exon1:c.A897G:p.K299K	14qC1	chr14-3072210-123317701	4	2	2	0.846	4.002714121	NA	1	0.572492209	2	0.9961855	AAC	synonymous	AACA	8	AACAAACA	NA
PW1829T10	chr14	55973148	PW1829tail	autochthonous	sgMsh2 aCD4/8	55973148	-	A	Insertion	Mutect2;Vardict	2	0.035	269	0	0	NA	exonic	Cma2	frameshift insertion	"Cma2:NM_001361637:exon3:c.292dupA:p.S100Kfs*19,Cma2:NM_001024714:exon4:c.460dupA:p.S156Kfs*19"	14qC3	chr14-3072210-123317701	4	2	2	0.846	4.002714121	NA	1	0.16559692	NA	NA	TGA	frameshift	A	5	AAAAA	1
PW1829T10	chr14	60756297	PW1829tail	autochthonous	sgMsh2 aCD4/8	60756297	G	A	SNV	Mutect2;Vardict	2	0.059	70	6	0	0	exonic	Spata13	nonsynonymous SNV	"Spata13:NM_001310594:exon8:c.G1187A:p.R396H,Spata13:NM_001033272:exon11:c.G3197A:p.R1066H"	14qD1	chr14-3072210-123317701	4	2	2	0.846	4.002714121	NA	1	0.279149094	3	0.9442763	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr14	77632564	PW1829tail	autochthonous	sgMsh2 aCD4/8	77632564	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	172	0	0	NA	exonic	Enox1	nonsynonymous SNV	Enox1:NM_001253759:exon14:c.G1263T:p.E421D	14qD3	chr14-3072210-123317701	4	2	2	0.846	4.002714121	NA	1	0.203447644	3	0.9999831	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr15	58968840	PW1829tail	autochthonous	sgMsh2 aCD4/8	58968840	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.091	170	26	0	0	exonic	Mtss1	frameshift deletion	"Mtss1:NM_001146180:exon6:c.459delA:p.R155Gfs*50,Mtss1:NM_144800:exon6:c.459delA:p.V154Wfs*55"	15qD1	chr15-3327923-102485857	4	3	1	0.846	4.002714121	NA	1	0.430551992	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T10	chr15	59416044	PW1829tail	autochthonous	sgMsh2 aCD4/8	59416044	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	251	61	2	0.032786885	exonic	Nsmce2	synonymous SNV	"Nsmce2:NM_001164604:exon3:c.C177T:p.Y59Y,Nsmce2:NM_001374768:exon3:c.C177T:p.Y59Y,Nsmce2:NM_026746:exon3:c.C177T:p.Y59Y"	15qD1	chr15-3327923-102485857	4	3	1	0.846	4.002714121	NA	1	0.212910326	3	0.9999995	ACA	synonymous	NA	NA	NA	NA
PW1829T10	chr16	91861229	PW1829tail	autochthonous	sgMsh2 aCD4/8	91861229	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	112	2	0	0	exonic	Itsn1	synonymous SNV	"Itsn1:NM_001110275:exon25:c.A3198G:p.G1066G,Itsn1:NM_010587:exon25:c.A3198G:p.G1066G"	16qC4	chr16-29220012-97451700	4	3	1	0.846	4.002714121	NA	1	0.553566847	2	0.9999263	GAA	synonymous	A	5	AAAAA	NA
PW1829T10	chr17	6027219	PW1829tail	autochthonous	sgMsh2 aCD4/8	6027219	C	T	SNV	Mutect2;Vardict	2	0.049	91	16	2	0.125	exonic	Synj2	nonsynonymous SNV	"Synj2:NM_001290698:exon15:c.C1990T:p.R664W,Synj2:NM_001113351:exon20:c.C2683T:p.R895W,Synj2:NM_001357665:exon20:c.C1813T:p.R605W,Synj2:NM_001357667:exon20:c.C2683T:p.R895W,Synj2:NM_011523:exon20:c.C2683T:p.R895W,Synj2:NM_001113352:exon21:c.C2938T:p.R980W,Synj2:NM_001113353:exon21:c.C2938T:p.R980W"	17qA1	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.231835688	3	0.9946484	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr17	19588959	PW1829tail	autochthonous	sgMsh2 aCD4/8	19588959	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	249	0	0	NA	exonic	Vmn2r101	nonsynonymous SNV	Vmn2r101:NM_001104563:exon2:c.T349G:p.F117V	17qA3.2	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.189253623	3	4.47E-08	GTT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr17	20541327	PW1829tail	autochthonous	sgMsh2 aCD4/8	20541327	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	187	0	0	NA	exonic	Vmn2r109	synonymous SNV	Vmn2r109:NM_001104571:exon6:c.C1767A:p.A589A	17qA3.2	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.506253441	2	0.9999979	TGG	synonymous	NA	NA	NA	NA
PW1829T10	chr17	20573902	PW1829tail	autochthonous	sgMsh2 aCD4/8	20573902	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	148	0	0	NA	exonic	Vmn2r110	nonsynonymous SNV	Vmn2r110:NM_001104572:exon6:c.G2504T:p.R835I	17qA3.2	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	1	1	1.03E-09	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr17	20846589	PW1829tail	autochthonous	sgMsh2 aCD4/8	20846589	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	172	0	0	NA	exonic	Vmn1r230	nonsynonymous SNV	Vmn1r230:NM_134197:exon1:c.T39A:p.F13L	17qA3.2	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.227104347	3	0.9998989	TTC	nonsynonymous	T	5	TTTTT	NA
PW1829T10	chr17	33135847	PW1829tail	autochthonous	sgMsh2 aCD4/8	33135847	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	118	0	0	NA	exonic	Morc2b	nonsynonymous SNV	"Morc2b:NM_177719:exon2:c.C2950T:p.L984F,Morc2b:NM_001360203:exon3:c.C2950T:p.L984F"	17qB1	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.293343115	3	0.9621985	AGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr17	75500154	PW1829tail	autochthonous	sgMsh2 aCD4/8	75500154	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	189	14	0	0	exonic	Rasgrp3	nonsynonymous SNV	"Rasgrp3:NM_001166493:exon7:c.G612T:p.W204C,Rasgrp3:NM_001360103:exon7:c.G612T:p.W204C,Rasgrp3:NM_207246:exon8:c.G612T:p.W204C"	17qE2	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	1	0.468402716	2	0.9999578	GGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr17	87718631	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718651	TTCGTCAGACCGGGGTGATTG	-	Deletion	Strelka2;Vardict	2	0.3269	52	36	0	0	exonic	Msh2	nonframeshift deletion	Msh2:NM_008628:exon13:c.2036_2056del:p.R680_V686del	17qE4	chr17-3077483-90208269	4	2	2	0.846	4.002714121	NA	2	1	NA	NA	ATT	inframe	ACAT	8	ACATACAT	-21
PW1829T10	chr18	76955056	PW1829tail	autochthonous	sgMsh2 aCD4/8	76955056	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.094	103	41	0	0	exonic	Hdhd2	frameshift insertion	"Hdhd2:NM_001039201:exon3:c.181dupA:p.L63Tfs*3,Hdhd2:NM_001039202:exon3:c.181dupA:p.L63Tfs*3,Hdhd2:NM_001361227:exon3:c.181dupA:p.L63Tfs*3,Hdhd2:NM_029826:exon3:c.181dupA:p.L63Tfs*3"	18qE3	chr18-5062409-89104078	4	2	2	0.846	4.002714121	NA	1	0.444746013	NA	NA	TGA	frameshift	A	5	AAAAA	1
PW1829T10	chr19	12935522	PW1829tail	autochthonous	sgMsh2 aCD4/8	12935522	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	172	0	0	NA	exonic	Olfr1449	nonsynonymous SNV	Olfr1449:NM_146303:exon1:c.G783T:p.Q261H	19qA	chr19-4352434-60987573	4	2	2	0.846	4.002714121	NA	1	1	1	1.00E-09	AGC	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr19	13146031	PW1829tail	autochthonous	sgMsh2 aCD4/8	13146031	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.024	268	0	0	NA	exonic	Olfr1459	synonymous SNV	Olfr1459:NM_146689:exon1:c.T627G:p.L209L	19qA	chr19-4352434-60987573	4	2	2	0.846	4.002714121	NA	1	0.113552174	3	1.00E-09	TAA	synonymous	NA	NA	NA	NA
PW1829T10	chr19	45040279	PW1829tail	autochthonous	sgMsh2 aCD4/8	45040279	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	49	0	0	NA	exonic	Pdzd7	nonsynonymous SNV	Pdzd7:NM_001195265:exon3:c.G424A:p.E142K	19qC3	chr19-4352434-60987573	4	2	2	0.846	4.002714121	NA	1	0.5015221	2	0.9207215	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	28505247	PW1829tail	autochthonous	sgMsh2 aCD4/8	28505247	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	82	5	0	0	exonic	Gbgt1	nonsynonymous SNV	Gbgt1:NM_139197:exon7:c.G896A:p.S299N	2qA3	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.307537137	3	0.8900913	AGC	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	31403681	PW1829tail	autochthonous	sgMsh2 aCD4/8	31403681	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	52	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon48:c.G7365A:p.L2455L	2qB	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.690775723	2	0.7978181	TGG	synonymous	NA	NA	NA	NA
PW1829T10	chr2	51925914	PW1829tail	autochthonous	sgMsh2 aCD4/8	51925914	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	122	28	0	0	exonic	Rbm43	synonymous SNV	"Rbm43:NM_001355608:exon4:c.C588A:p.A196A,Rbm43:NM_001141981:exon5:c.C294A:p.A98A,Rbm43:NM_001141982:exon5:c.C294A:p.A98A,Rbm43:NM_001355604:exon5:c.C294A:p.A98A,Rbm43:NM_001355606:exon5:c.C294A:p.A98A,Rbm43:NM_001355607:exon5:c.C294A:p.A98A,Rbm43:NM_030243:exon5:c.C294A:p.A98A"	2qC1.1	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.260223731	3	0.9938502	TGG	synonymous	NA	NA	NA	NA
PW1829T10	chr2	70714152	PW1829tail	autochthonous	sgMsh2 aCD4/8	70714152	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	177	180	7	0.038888889	exonic	Tlk1	nonsynonymous SNV	"Tlk1:NM_001362963:exon20:c.G1994A:p.R665H,Tlk1:NM_172664:exon20:c.G2138A:p.R713H"	2qC2	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.24602971	3	0.9996507	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	82989767	PW1829tail	autochthonous	sgMsh2 aCD4/8	82989767	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	161	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon17:c.G15837T:p.K5279N	2qD	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.193984963	3	0.9999838	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	85353290	PW1829tail	autochthonous	sgMsh2 aCD4/8	85353290	A	C	SNV	Mutect2;Vardict	2	0.025	303	0	0	NA	exonic	Olfr988	nonsynonymous SNV	Olfr988:NM_001011534:exon1:c.T635G:p.L212R	2qD	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.118283514	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	137083043	PW1829tail	autochthonous	sgMsh2 aCD4/8	137083043	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	109	90	0	0	exonic	Jag1	nonsynonymous SNV	Jag1:NM_013822:exon26:c.G3638A:p.R1213Q	2qF3	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.231835688	3	0.9975971	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr2	153399446	PW1829tail	autochthonous	sgMsh2 aCD4/8	153399446	G	-	Deletion	Strelka2;Vardict	2	0.0946	74	27	4	0.148148148	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4896529-181684255	4	2	2	0.846	4.002714121	NA	1	0.447584818	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW1829T10	chr3	30931813	PW1829tail	autochthonous	sgMsh2 aCD4/8	30931813	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.373	55	4	1	0.25	exonic	Phc3	frameshift deletion	"Phc3:NM_001165955:exon8:c.1727delC:p.P576Hfs*17,Phc3:NM_001165954:exon9:c.1862delC:p.P621Hfs*17,Phc3:NM_153421:exon9:c.1826delC:p.P609Hfs*17,Phc3:NM_001165956:exon10:c.1736delC:p.P579Hfs*17"	3qA3	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	2	1	NA	NA	TGG	frameshift	G	7	GGGGGGG	-1
PW1829T10	chr3	37319580	PW1829tail	autochthonous	sgMsh2 aCD4/8	37319580	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	195	6	0	0	exonic	Bbs12	nonsynonymous SNV	"Bbs12:NM_001008502:exon2:c.G521A:p.R174H,Bbs12:NM_001255992:exon2:c.G176A:p.R59H"	3qB	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	1	0.33592518	3	0.7185191	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr3	88438531	PW1829tail	autochthonous	sgMsh2 aCD4/8	88438531	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	80	41	0	0	exonic	Sema4a	nonsynonymous SNV	"Sema4a:NM_001163489:exon12:c.C1346A:p.P449H,Sema4a:NM_001163490:exon12:c.C1346A:p.P449H,Sema4a:NM_001163491:exon12:c.C1346A:p.P449H,Sema4a:NM_013658:exon12:c.C1346A:p.P449H"	3qF1	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	1	0.264955072	3	0.9725612	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr3	88983470	PW1829tail	autochthonous	sgMsh2 aCD4/8	88983470	A	-	Deletion	Strelka2;Vardict	2	0.0792	101	30	0	0	exonic	Ash1l	frameshift deletion	Ash1l:NM_138679:exon2:c.2655delA:p.R888Efs*7	3qF1	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	1	0.374722173	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW1829T10	chr3	93201543	PW1829tail	autochthonous	sgMsh2 aCD4/8	93201543	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	173	0	0	NA	exonic	Flg2	nonsynonymous SNV	Flg2:NM_001013804:exon3:c.A877C:p.S293R	3qF2.1	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	1	0.307537137	3	0.9578523	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr3	123628016	PW1829tail	autochthonous	sgMsh2 aCD4/8	123628016	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	214	0	0	NA	exonic	Ndst3	synonymous SNV	Ndst3:NM_031186:exon3:c.C1167A:p.L389L	3qG1	chr3-8666483-159913826	4	2	2	0.846	4.002714121	NA	1	0.17032826	3	0.9999999	AGA	synonymous	NA	NA	NA	NA
PW1829T10	chr4	35709656	PW1829tail	autochthonous	sgMsh2 aCD4/8	35709656	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	146	0	0	NA	exonic	Lingo2	nonsynonymous SNV	"Lingo2:NM_001166001:exon2:c.G323A:p.R108H,Lingo2:NM_175516:exon3:c.G323A:p.R108H,Lingo2:NM_001165999:exon8:c.G323A:p.R108H,Lingo2:NM_001166000:exon9:c.G323A:p.R108H"	4qA5	chr4-3973093-155091012	4	2	2	0.846	4.002714121	NA	1	0.236567028	3	0.9993748	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr4	74074142	PW1829tail	autochthonous	sgMsh2 aCD4/8	74074142	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	179	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon2:c.A245C:p.K82T,Frmd3:NM_172869:exon2:c.A245C:p.K82T"	4qC3	chr4-3973093-155091012	4	2	2	0.846	4.002714121	NA	1	0.260223731	3	0.9990113	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr4	116137317	PW1829tail	autochthonous	sgMsh2 aCD4/8	116137319	AAG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	75	19	1	0.052631579	exonic	Lurap1	nonframeshift deletion	Lurap1:NM_026547:exon2:c.714_716del:p.F238del	4qD1	chr4-3973093-155091012	4	2	2	0.846	4.002714121	NA	1	0.345387862	NA	NA	CAA	inframe	NA	NA	NA	-3
PW1829T10	chr4	135976440	PW1829tail	autochthonous	sgMsh2 aCD4/8	135976440	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	79	113	5	0.044247788	exonic	Pithd1	synonymous SNV	Pithd1:NM_025411:exon6:c.C591T:p.D197D	4qD3	chr4-3973093-155091012	4	2	2	0.846	4.002714121	NA	1	0.312268478	3	0.8691184	GGT	synonymous	NA	NA	NA	NA
PW1829T10	chr5	14676972	PW1829tail	autochthonous	sgMsh2 aCD4/8	14676972	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	127	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon5:c.A5843C:p.E1948A,Pclo:NM_011995:exon5:c.A5843C:p.E1948A"	5qA1	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.241298369	3	0.9981736	GAG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr5	16246733	PW1829tail	autochthonous	sgMsh2 aCD4/8	16246733	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	139	0	0	NA	exonic	Cacna2d1	synonymous SNV	"Cacna2d1:NM_001110843:exon7:c.C594T:p.D198D,Cacna2d1:NM_001110844:exon7:c.C594T:p.D198D,Cacna2d1:NM_001110845:exon7:c.C594T:p.D198D,Cacna2d1:NM_001110846:exon7:c.C594T:p.D198D,Cacna2d1:NM_009784:exon7:c.C594T:p.D198D"	5qA2	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.345387862	3	0.6041771	ACG	synonymous	NA	NA	NA	NA
PW1829T10	chr5	89122420	PW1829tail	autochthonous	sgMsh2 aCD4/8	89122420	A	-	Deletion	Strelka2;Vardict	2	0.1127	71	34	0	0	exonic	Slc4a4	frameshift deletion	"Slc4a4:NM_001359212:exon5:c.694delA:p.K233Nfs*37,Slc4a4:NM_001359213:exon5:c.667delA:p.K224Nfs*37,Slc4a4:NM_001136260:exon8:c.826delA:p.K277Nfs*37,Slc4a4:NM_001197147:exon8:c.799delA:p.K268Nfs*37,Slc4a4:NM_018760:exon8:c.826delA:p.K277Nfs*37,Slc4a4:NM_001359211:exon9:c.922delA:p.K309Nfs*37"	5qE1	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.533222082	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1829T10	chr5	92942314	PW1829tail	autochthonous	sgMsh2 aCD4/8	92942314	G	A	SNV	Mutect2;MuSe;Vardict	3	0.286	12	41	8	0.195121951	exonic	Shroom3	synonymous SNV	"Shroom3:NM_001077595:exon4:c.G2397A:p.V799V,Shroom3:NM_001077596:exon4:c.G2397A:p.V799V,Shroom3:NM_015756:exon5:c.G2922A:p.V974V"	5qE2	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	1	0.7876503	TGC	synonymous	NA	NA	NA	NA
PW1829T10	chr5	101953072	PW1829tail	autochthonous	sgMsh2 aCD4/8	101953072	G	-	Deletion	Mutect2;Vardict	2	0.06	130	7	1	0.142857143	exonic	Wdfy3	frameshift deletion	Wdfy3:NM_172882:exon8:c.678delC:p.Y227Ifs*13	5qE5	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	0.283880434	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T10	chr5	114330236	PW1829tail	autochthonous	sgMsh2 aCD4/8	114330236	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	205	0	0	NA	exonic	Myo1h	nonsynonymous SNV	Myo1h:NM_001164573:exon10:c.C1091A:p.S364Y	5qF	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	1	1.00E-09	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr5	137985245	PW1829tail	autochthonous	sgMsh2 aCD4/8	137985245	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	74	12	4	0.333333333	exonic	Azgp1	nonsynonymous SNV	Azgp1:NM_013478:exon2:c.G181A:p.G61R	5qG2	chr5-3582301-150063600	4	2	2	0.846	4.002714121	NA	1	1	1	0.9999926	CGG	nonsynonymous	CAACAG	13	CAACAGCAACAGC	NA
PW1829T10	chr6	25669405	PW1829tail	autochthonous	sgMsh2 aCD4/8	25669405	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	120	0	0	NA	exonic	Gpr37	nonsynonymous SNV	Gpr37:NM_010338:exon2:c.C1439A:p.T480K	6qA3.1	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	2	1	1	4.24E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr6	41688063	PW1829tail	autochthonous	sgMsh2 aCD4/8	41688063	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	97	0	0	NA	exonic	Kel	nonsynonymous SNV	Kel:NM_032540:exon17:c.T1766G:p.L589R	6qB2.1	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.264955072	3	0.9833617	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr6	56137375	PW1829tail	autochthonous	sgMsh2 aCD4/8	56137375	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	128	4	0	0	exonic	Pde1c	nonsynonymous SNV	"Pde1c:NM_001159952:exon13:c.C1525T:p.R509W,Pde1c:NM_001159956:exon13:c.C1441T:p.R481W,Pde1c:NM_001025568:exon14:c.C1552T:p.R518W,Pde1c:NM_001159953:exon14:c.C1552T:p.R518W,Pde1c:NM_001159957:exon14:c.C1468T:p.R490W,Pde1c:NM_001355475:exon14:c.C1552T:p.R518W,Pde1c:NM_001159955:exon15:c.C1552T:p.R518W,Pde1c:NM_001159960:exon15:c.C1552T:p.R518W,Pde1c:NM_011054:exon15:c.C1552T:p.R518W"	6qB3	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.411626629	2	0.962652	CGA	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr6	82742924	PW1829tail	autochthonous	sgMsh2 aCD4/8	82742924	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	58	78	5	0.064102564	exonic	Hk2	nonsynonymous SNV	Hk2:NM_013820:exon7:c.G754A:p.E252K	6qC3	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.350119202	3	0.6754147	TCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr6	87581487	PW1829tail	autochthonous	sgMsh2 aCD4/8	87581487	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	141	4	0	0	exonic	Prokr1	synonymous SNV	"Prokr1:NM_001355655:exon3:c.C915T:p.I305I,Prokr1:NM_021381:exon3:c.C915T:p.I305I"	6qD1	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.227104347	3	0.9995699	CGA	synonymous	CACG	8	CACGCACG	NA
PW1829T10	chr6	92411399	PW1829tail	autochthonous	sgMsh2 aCD4/8	92411399	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	94	4	0	0	exonic	Prickle2	nonsynonymous SNV	"Prickle2:NM_001134459:exon7:c.G1021A:p.G341S,Prickle2:NM_001134460:exon7:c.G1021A:p.G341S,Prickle2:NM_001134461:exon7:c.G1021A:p.G341S,Prickle2:NM_001081146:exon8:c.G1189A:p.G397S"	6qD1	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.283880434	3	0.9610685	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr6	108363675	PW1829tail	autochthonous	sgMsh2 aCD4/8	108363675	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	161	25	2	0.08	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon11:c.C921T:p.H307H	6qE1	chr6-3483595-148817892	5	3	2	0.846	4.002714121	NA	1	0.657656339	2	0.9978099	ACC	synonymous	NA	NA	NA	NA
PW1829T10	chr7	6502068	PW1829tail	autochthonous	sgMsh2 aCD4/8	6502068	T	C	SNV	Mutect2;MuSe;Vardict	3	0.077	283	0	0	NA	exonic	Olfr1348	nonsynonymous SNV	Olfr1348:NM_146913:exon1:c.A157G:p.I53V	7qA1	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.364313224	2	0.9369909	ATG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr7	13291505	PW1829tail	autochthonous	sgMsh2 aCD4/8	13291505	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	107	20	0	0	exonic	Lig1	synonymous SNV	"Lig1:NM_001083188:exon9:c.C744T:p.G248G,Lig1:NM_001199310:exon9:c.C744T:p.G248G,Lig1:NM_010715:exon9:c.C744T:p.G248G"	7qA1	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.298074456	3	0.943783	GCA	synonymous	NA	NA	NA	NA
PW1829T10	chr7	107182779	PW1829tail	autochthonous	sgMsh2 aCD4/8	107182779	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	184	0	0	NA	exonic	Nlrp14	nonsynonymous SNV	Nlrp14:NM_001002894:exon3:c.T1182G:p.F394L	7qE3	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.160865579	3	0.9999997	TTT	nonsynonymous	T	5	TTTTT	NA
PW1829T10	chr7	127019730	PW1829tail	autochthonous	sgMsh2 aCD4/8	127019730	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	81	4	0	0	exonic	Prrt2	nonsynonymous SNV	Prrt2:NM_001102563:exon2:c.G562A:p.G188R	7qF3	chr7-4692757-143497059	4	2	2	0.846	4.002714121	NA	1	0.24602971	3	0.9862462	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr8	40467431	PW1829tail	autochthonous	sgMsh2 aCD4/8	40467431	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	225	3	0	0	exonic	Zdhhc2	nonsynonymous SNV	"Zdhhc2:NM_001357249:exon9:c.G370T:p.A124S,Zdhhc2:NM_178395:exon9:c.G730T:p.A244S"	8qA4	chr8-3154030-126969919	4	2	2	0.846	4.002714121	NA	1	0.193984963	3	0.9999997	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr8	86043743	PW1829tail	autochthonous	sgMsh2 aCD4/8	86043743	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	66	31	0	0	exonic	Phkb	nonsynonymous SNV	"Phkb:NM_001364412:exon27:c.G2664T:p.Q888H,Phkb:NM_199446:exon28:c.G2640T:p.Q880H,Phkb:NM_001364411:exon30:c.G2487T:p.Q829H"	8qC3	chr8-3154030-126969919	4	2	2	0.846	4.002714121	NA	1	0.316999818	3	0.8369134	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr8	95059198	PW1829tail	autochthonous	sgMsh2 aCD4/8	95059198	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	99	1	0	0	exonic	Drc7	synonymous SNV	Drc7:NM_001042715:exon5:c.G681A:p.P227P	8qC5	chr8-3154030-126969919	4	2	2	0.846	4.002714121	NA	1	0.255492391	3	0.9895603	CGC	synonymous	NA	NA	NA	NA
PW1829T10	chr8	113777869	PW1829tail	autochthonous	sgMsh2 aCD4/8	113777869	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	121	0	0	NA	exonic	Adamts18	nonsynonymous SNV	Adamts18:NM_172466:exon4:c.C589A:p.H197N	8qE1	chr8-3154030-126969919	4	2	2	0.846	4.002714121	NA	1	0.25076105	3	0.9961539	TGG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr9	15960104	PW1829tail	autochthonous	sgMsh2 aCD4/8	15960104	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	85	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon19:c.T11002G:p.F3668V	9qA2	chr9-10089866-124127055	3	2	1	0.846	4.002714121	NA	1	0.279149094	3	0.96036	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr9	19121698	PW1829tail	autochthonous	sgMsh2 aCD4/8	19121698	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	173	0	0	NA	exonic	Olfr836	nonsynonymous SNV	Olfr836:NM_146564:exon1:c.T742G:p.L248V	9qA2	chr9-10089866-124127055	3	2	1	0.846	4.002714121	NA	1	0.146671558	3	0.9999998	TTT	nonsynonymous	NA	NA	NA	NA
PW1829T10	chr9	119148746	PW1829tail	autochthonous	sgMsh2 aCD4/8	119148746	C	T	SNV	Mutect2;MuSe;Vardict	3	0.075	144	14	0	0	exonic	Acaa1b	nonsynonymous SNV	Acaa1b:NM_146230:exon11:c.G1187A:p.R396H	9qF3	chr9-10089866-124127055	3	2	1	0.846	4.002714121	NA	1	0.354850543	2	0.5506441	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T10	chrX	4952469	PW1829tail	autochthonous	sgMsh2 aCD4/8	4952469	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.047	162	0	0	NA	exonic	Btbd35f27	frameshift deletion	Btbd35f27:NM_001243024:exon1:c.250delT:p.L85Wfs*45	XqA1.1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T10	chrX	79505181	PW1829tail	autochthonous	sgMsh2 aCD4/8	79505181	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	64	0	0	NA	exonic	Cfap47	nonsynonymous SNV	Cfap47:NM_001368718:exon8:c.A1299T:p.K433N	XqB	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	TTT	nonsynonymous	T	5	TTTTT	NA
PW1829T10	chrX	92120364	PW1829tail	autochthonous	sgMsh2 aCD4/8	92120364	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	142	0	0	NA	exonic	Mageb18	nonsynonymous SNV	Mageb18:NM_173783:exon5:c.A271C:p.I91L	XqC2	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	ATA	nonsynonymous	NA	NA	NA	NA
PW1829T10	chrX	112631935	PW1829tail	autochthonous	sgMsh2 aCD4/8	112631937	GAG	-	Deletion	Mutect2;Vardict	2	0.057	60	0	0	NA	exonic	Zfp711	nonframeshift deletion	"Zfp711:NM_001381900:exon7:c.1071_1073del:p.R360del,Zfp711:NM_001381899:exon8:c.1071_1073del:p.R360del,Zfp711:NM_177747:exon8:c.1206_1208del:p.R405del,Zfp711:NM_001381898:exon9:c.1206_1208del:p.R405del"	XqE1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	AGA	inframe	NA	NA	NA	-3
PW1829T10	chrX	135745974	PW1829tail	autochthonous	sgMsh2 aCD4/8	135745974	A	-	Deletion	Strelka2;Vardict	2	0.1316	38	10	1	0.1	exonic	Armcx5	frameshift deletion	Armcx5:NM_001009575:exon4:c.798delA:p.A270Lfs*4	XqF1	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	TAA	frameshift	A	10	AAAAAAAAAA	-1
PW1829T10	chrX	152037413	PW1829tail	autochthonous	sgMsh2 aCD4/8	152037413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.266	46	127	14	0.11023622	exonic	Smc1a	nonsynonymous SNV	Smc1a:NM_019710:exon14:c.G2240A:p.R747H	XqF3	NA	NA	NA	NA	0.846	4.002714121	NA	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr1	66530075	PW1829tail	autochthonous	sgMsh2 aCD4/8	66530075	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	189	0	0	NA	exonic	Unc80	nonsynonymous SNV	"Unc80:NM_001368824:exon17:c.A2888C:p.K963T,Unc80:NM_001368825:exon17:c.A2888C:p.K963T,Unc80:NM_175510:exon17:c.A2888C:p.K963T"	1qC3	chr1-6770919-194950763	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.233503576	3	0.9995161	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr1	173644757	PW1829tail	autochthonous	sgMsh2 aCD4/8	173644757	A	C	SNV	Mutect2;Vardict	2	0.049	264	3	0	0	exonic	Ifi209	nonsynonymous SNV	Ifi209:NM_175026:exon6:c.A1163C:p.K388T	1qH3	chr1-6770919-194950763	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.27906525	3	0.9895004	AAA	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr11	43202161	PW1829tail	autochthonous	sgMsh2 aCD4/8	43202161	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	117	0	0	NA	exonic	Atp10b	nonsynonymous SNV	Atp10b:NM_176999:exon9:c.A1322C:p.N441T	11qA5	chr11-3135564-69579350	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	3.57E-09	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr11	59824308	PW1829tail	autochthonous	sgMsh2 aCD4/8	59824308	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	48	176	37	0.210227273	exonic	Cops3	synonymous SNV	Cops3:NM_011991:exon8:c.T903G:p.S301S	11qB1.3	chr11-3135564-69579350	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	0.9995994	GAG	synonymous	NA	NA	NA	NA
PW1829T2	chr11	61328606	PW1829tail	autochthonous	sgMsh2 aCD4/8	61328606	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	76	0	0	NA	exonic	Slc47a2	nonsynonymous SNV	Slc47a2:NM_001033542:exon7:c.T590G:p.V197G	11qB2	chr11-3135564-69579350	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.341712551	2	0.7286456	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr11	62353251	PW1829tail	autochthonous	sgMsh2 aCD4/8	62353251	G	A	SNV	Mutect2;Vardict	2	0.064	70	123	2	0.016260163	exonic	Ncor1	nonsynonymous SNV	"Ncor1:NM_001252313:exon25:c.C3520T:p.R1174W,Ncor1:NM_011308:exon25:c.C3358T:p.R1120W"	11qB2	chr11-3135564-69579350	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.364493387	2	0.8457694	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr11	70463513	PW1829tail	autochthonous	sgMsh2 aCD4/8	70463513	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	61	1	0	0	exonic	Zmynd15	nonsynonymous SNV	"Zmynd15:NM_001029929:exon6:c.C1201T:p.L401F,Zmynd15:NM_001348337:exon6:c.C811T:p.L271F"	11qB3	chr11-69590981-72303763	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.723291566	1	0.5692236	GCT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr13	21537130	PW1829tail	autochthonous	sgMsh2 aCD4/8	21537130	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	83	0	0	NA	exonic	Olfr1366	nonsynonymous SNV	Olfr1366:NM_146283:exon1:c.A874C:p.I292L	13qA3.1	chr13-6560583-119495179	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.301846086	3	0.6399135	ATT	nonsynonymous	A	5	AAAAA	NA
PW1829T2	chr13	100223506	PW1829tail	autochthonous	sgMsh2 aCD4/8	100223506	T	C	SNV	Mutect2;Vardict	2	0.024	285	14	0	0	exonic	Naip5	synonymous SNV	Naip5:NM_010870:exon10:c.A1221G:p.L407L	13qD1	chr13-6560583-119495179	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.13668502	3	1.01E-09	TTA	synonymous	NA	NA	NA	NA
PW1829T2	chr14	23451620	PW1829tail	autochthonous	sgMsh2 aCD4/8	23451620	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	213	0	0	NA	exonic	Kcnma1	nonsynonymous SNV	"Kcnma1:NM_001253373:exon15:c.A1751C:p.K584T,Kcnma1:NM_001253374:exon15:c.A1745C:p.K582T,Kcnma1:NM_001253358:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253359:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253360:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253361:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253362:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253363:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253364:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253365:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253366:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253367:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253368:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253369:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253370:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253371:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253372:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253375:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253376:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253377:exon16:c.A1907C:p.K636T,Kcnma1:NM_001253378:exon16:c.A1907C:p.K636T,Kcnma1:NM_010610:exon16:c.A1907C:p.K636T"	14qA3	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	1	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr14	50736297	PW1829tail	autochthonous	sgMsh2 aCD4/8	50736297	A	G	SNV	Mutect2;Vardict	2	0.025	436	0	0	NA	exonic	Olfr749	synonymous SNV	Olfr749:NM_020288:exon2:c.T864C:p.I288I	14qC1	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.142380229	3	1	AAA	synonymous	NA	NA	NA	NA
PW1829T2	chr14	54585702	PW1829tail	autochthonous	sgMsh2 aCD4/8	54585702	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	172	3	0	0	exonic	4931414P19Rik	nonsynonymous SNV	4931414P19Rik:NM_028890:exon5:c.A1037G:p.K346R	14qC2	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.370188597	2	0.9924905	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr14	61191977	PW1829tail	autochthonous	sgMsh2 aCD4/8	61191977	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	145	0	0	NA	exonic	Sacs	nonsynonymous SNV	"Sacs:NM_015788:exon8:c.T1484G:p.L495R,Sacs:NM_172809:exon8:c.T1484G:p.L495R"	14qD1	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	1.02E-09	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr14	119019508	PW1829tail	autochthonous	sgMsh2 aCD4/8	119019508	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	225	1	0	0	exonic	Uggt2	nonsynonymous SNV	Uggt2:NM_001081252:exon28:c.A3313C:p.S1105R	14qE4	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.20502753	3	0.9999954	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr14	123291791	PW1829tail	autochthonous	sgMsh2 aCD4/8	123291791	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	113	0	0	NA	exonic	Nalcn	nonsynonymous SNV	Nalcn:NM_177393:exon38:c.T4271G:p.L1424R	14qE5	chr14-3072210-123592557	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.341712551	2	0.8232426	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr17	19523431	PW1829tail	autochthonous	sgMsh2 aCD4/8	19523431	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	202	0	0	NA	exonic	Vmn2r100	nonsynonymous SNV	Vmn2r100:NM_001104562:exon4:c.T1355G:p.I452S	17qA3.2	chr17-3077700-90208269	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	1.00E-09	ATT	nonsynonymous	ATTG	8	ATTGATTG	NA
PW1829T2	chr17	30996377	PW1829tail	autochthonous	sgMsh2 aCD4/8	30996377	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	117	0	0	NA	exonic	Umodl1	synonymous SNV	Umodl1:NM_177465:exon16:c.G3174A:p.V1058V	17qA3.3	chr17-3077700-90208269	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.387274224	2	0.986393	TGA	synonymous	NA	NA	NA	NA
PW1829T2	chr17	33433378	PW1829tail	autochthonous	sgMsh2 aCD4/8	33433378	A	T	SNV	Mutect2;Vardict	2	0.034	163	0	0	NA	exonic	Actl9	nonsynonymous SNV	Actl9:NM_183282:exon1:c.A411T:p.Q137H	17qB1	chr17-3077700-90208269	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.193637112	3	0.9999486	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr17	37499274	PW1829tail	autochthonous	sgMsh2 aCD4/8	37499274	T	C	SNV	Mutect2;Vardict	2	0.032	289	0	0	NA	exonic	Olfr110	nonsynonymous SNV	Olfr110:NM_146328:exon2:c.T622C:p.W208R	17qB1	chr17-3077700-90208269	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.182246694	3	6.28E-09	CTG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr17	87718638	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Strelka2;Vardict	2	0.5588	68	6	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077700-90208269	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	3	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1829T2	chr18	6112026	PW1829tail	autochthonous	sgMsh2 aCD4/8	6112026	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	151	33	1	0.03030303	exonic	Arhgap12	nonsynonymous SNV	"Arhgap12:NM_001039692:exon3:c.A337C:p.S113R,Arhgap12:NM_029277:exon3:c.A337C:p.S113R"	18qA1	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	NA	NA	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr18	37486676	PW1829tail	autochthonous	sgMsh2 aCD4/8	37486676	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	155	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.C1518G:p.I506M	18qB3	chr18-12906706-89104078	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.301846086	3	0.7209854	TCA	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr19	8926225	PW1829tail	autochthonous	sgMsh2 aCD4/8	8926225	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	116	85	6	0.070588235	exonic	B3gat3	synonymous SNV	B3gat3:NM_024256:exon4:c.G762T:p.A254A	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.768853239	1	0.9827867	CGG	synonymous	NA	NA	NA	NA
PW1829T2	chr19	12862434	PW1829tail	autochthonous	sgMsh2 aCD4/8	12862434	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	240	0	0	NA	exonic	Olfr1444	nonsynonymous SNV	Olfr1444:NM_146702:exon1:c.T658G:p.F220V	19qA	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	3	0.6687937	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr19	39142317	PW1829tail	autochthonous	sgMsh2 aCD4/8	39142317	G	A	SNV	Mutect2;Vardict	2	0.038	154	0	0	NA	exonic	Cyp2c66	nonsynonymous SNV	Cyp2c66:NM_001011707:exon3:c.G374A:p.R125H	19qC3	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.216417949	3	0.9994855	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr19	56793300	PW1829tail	autochthonous	sgMsh2 aCD4/8	56793300	T	-	Deletion	Strelka2;Vardict	2	0.093	86	159	0	0	exonic	Ccdc186	frameshift deletion	Ccdc186:NM_170757:exon14:c.2446delA:p.T816Pfs*2	19qD2	chr19-3378213-61225035	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.529654453	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
PW1829T2	chr2	57110734	PW1829tail	autochthonous	sgMsh2 aCD4/8	57110735	AC	-	Deletion	Mutect2;Vardict	2	0.065	88	7	0	0	exonic	Nr4a2	frameshift deletion	"Nr4a2:NM_001139509:exon4:c.896_897del:p.C299Ffs*3,Nr4a2:NM_013613:exon4:c.896_897del:p.C299Ffs*3"	2qC1.1	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.370188597	NA	NA	AAC	frameshift	NA	NA	NA	-2
PW1829T2	chr2	70232465	PW1829tail	autochthonous	sgMsh2 aCD4/8	70232465	G	-	Deletion	Mutect2;Vardict	2	0.038	145	0	0	NA	exonic	Myo3b	frameshift deletion	Myo3b:NM_177376:exon11:c.1092delG:p.V365Sfs*21	2qC2	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.216417949	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW1829T2	chr2	76790081	PW1829tail	autochthonous	sgMsh2 aCD4/8	76790081	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	119	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon93:c.G22428T:p.K7476N,Ttn:NM_011652:exon214:c.G42171T:p.K14057N,Ttn:NM_001385708:exon251:c.G48003T:p.K16001N"	2qC3	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.597996964	2	0.9995184	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr2	86042013	PW1829tail	autochthonous	sgMsh2 aCD4/8	86042013	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	314	0	0	NA	exonic	Olfr1033	nonsynonymous SNV	Olfr1033:NM_146578:exon3:c.C697T:p.R233C	2qD	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.13668502	3	1.00E-09	GCG	nonsynonymous	AGGC	8	AGGCAGGC	NA
PW1829T2	chr2	87022162	PW1829tail	autochthonous	sgMsh2 aCD4/8	87022162	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	259	0	0	NA	exonic	Olfr1104	synonymous SNV	Olfr1104:NM_146767:exon1:c.C381T:p.C127C	2qD	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.142380229	3	1.21E-09	TGC	synonymous	NA	NA	NA	NA
PW1829T2	chr2	121954772	PW1829tail	autochthonous	sgMsh2 aCD4/8	121954772	G	A	SNV	Mutect2;Vardict	2	0.026	380	0	0	NA	exonic	Mageb3	nonsynonymous SNV	Mageb3:NM_008545:exon1:c.C448T:p.R150C	2qE5	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.148075439	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr2	136550107	PW1829tail	autochthonous	sgMsh2 aCD4/8	136550107	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	98	0	0	NA	exonic	Ankef1	synonymous SNV	Ankef1:NM_175667:exon7:c.G1215A:p.S405S	2qF3	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	0.9999999	CGT	synonymous	CGTA	8	CGTACGTA	NA
PW1829T2	chr2	140275481	PW1829tail	autochthonous	sgMsh2 aCD4/8	140275481	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	113	0	0	NA	exonic	Sel1l2	nonsynonymous SNV	Sel1l2:NM_001033296:exon5:c.A469C:p.S157R	2qF3	chr2-4925576-181511691	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.643558637	2	0.9864776	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	54317626	PW1829tail	autochthonous	sgMsh2 aCD4/8	54317626	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	67	0	0	NA	exonic	Trpc4	nonsynonymous SNV	Trpc4:NM_016984:exon11:c.A2395T:p.I799F	3qC	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.541044872	2	0.9983008	GAT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	64556096	PW1829tail	autochthonous	sgMsh2 aCD4/8	64556096	G	A	SNV	Mutect2;Vardict	2	0.012	539	0	0	NA	exonic	Vmn2r6	nonsynonymous SNV	"Vmn2r6:NM_001104619:exon2:c.C1049T:p.A350V,Vmn2r6:NM_001385213:exon3:c.C1322T:p.A441V"	3qE1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.06834251	3	1	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	64715980	PW1829tail	autochthonous	sgMsh2 aCD4/8	64715980	T	C	SNV	Mutect2;MuSe;Vardict	3	0.043	721	0	0	NA	exonic	Vmn2r7	synonymous SNV	Vmn2r7:NM_175674:exon2:c.A918G:p.R306R	3qE1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.244893995	3	1.02E-09	GTC	synonymous	GTCT	8	GTCTGTCT	NA
PW1829T2	chr3	90192962	PW1829tail	autochthonous	sgMsh2 aCD4/8	90192962	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	123	0	0	NA	exonic	Nup210l	nonsynonymous SNV	Nup210l:NM_029937:exon32:c.T4294G:p.L1432V	3qF1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.307541296	3	0.605891	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	94998947	PW1829tail	autochthonous	sgMsh2 aCD4/8	94998947	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	228	132	4	0.03030303	exonic	Pi4kb	nonsynonymous SNV	"Pi4kb:NM_001293716:exon7:c.G853A:p.V285M,Pi4kb:NM_175356:exon8:c.G1804A:p.V602M,Pi4kb:NM_001293715:exon9:c.G1849A:p.V617M"	3qF2.1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.250589204	3	0.999266	TGT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	96269831	PW1829tail	autochthonous	sgMsh2 aCD4/8	96269831	G	A	SNV	Mutect2;Vardict	2	0.04	135	0	0	NA	exonic	H2bc18	nonsynonymous SNV	H2bc18:NM_175666:exon1:c.G80A:p.G27D	3qF2.1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.227808367	3	0.9972147	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr3	139522902	PW1829tail	autochthonous	sgMsh2 aCD4/8	139522902	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	170	0	0	NA	exonic	Stpg2	nonsynonymous SNV	Stpg2:NM_198659:exon12:c.A1462C:p.I488L	3qH1	chr3-3792373-159913826	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	2	1	1	1.00E-09	AAT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr4	136933368	PW1829tail	autochthonous	sgMsh2 aCD4/8	136933368	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	104	0	0	NA	exonic	Epha8	nonsynonymous SNV	Epha8:NM_007939:exon11:c.T2038G:p.F680V	4qD3	chr4-3973093-156200568	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.535349663	2	0.9999633	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr4	148593996	PW1829tail	autochthonous	sgMsh2 aCD4/8	148593996	C	A	SNV	Mutect2;Vardict	2	0.059	73	54	0	0	exonic	Srm	nonsynonymous SNV	Srm:NM_009272:exon5:c.C764A:p.P255Q	4qE2	chr4-3973093-156200568	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.336017341	2	7.88E-08	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr5	75637385	PW1829tail	autochthonous	sgMsh2 aCD4/8	75637385	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.075	146	3	0	0	exonic	Kit	frameshift deletion	"Kit:NM_001122733:exon8:c.1332delT:p.C446Vfs*35,Kit:NM_021099:exon8:c.1332delT:p.C446Vfs*35"	5qC3.3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.427140688	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T2	chr5	96726917	PW1829tail	autochthonous	sgMsh2 aCD4/8	96726917	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	121	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon49:c.C6938T:p.A2313V	5qE3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.529654453	2	0.9999945	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr5	129696057	PW1829tail	autochthonous	sgMsh2 aCD4/8	129696057	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	129	0	0	NA	exonic	Septin14	nonsynonymous SNV	Septin14:NM_028826:exon5:c.A515T:p.K172M	5qG1.3	chr5-3582301-150478141	4	3	1	0.784	4.465043995	POOR GOF (79.1%)	1	0.256284413	3	0.9775786	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr6	34394736	PW1829tail	autochthonous	sgMsh2 aCD4/8	34394736	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	168	11	0	0	exonic	Akr1b10	nonsynonymous SNV	Akr1b10:NM_172398:exon9:c.T835G:p.F279V	6qB1	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.495483198	2	0.9999998	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr6	46234249	PW1829tail	autochthonous	sgMsh2 aCD4/8	46234249	T	G	SNV	Mutect2;Vardict	2	0.03	171	0	0	NA	exonic	Cntnap2	nonsynonymous SNV	Cntnap2:NM_001004357:exon10:c.T1596G:p.N532K	6qB2.3	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.170856275	3	0.9999955	ATT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr6	58672044	PW1829tail	autochthonous	sgMsh2 aCD4/8	58672044	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.064	283	16	0	0	exonic	Abcg2	frameshift deletion	"Abcg2:NM_001381927:exon8:c.873delT:p.F293Sfs*11,Abcg2:NM_011920:exon8:c.873delT:p.F293Sfs*11,Abcg2:NM_001355477:exon9:c.873delT:p.F293Sfs*11,Abcg2:NM_001381925:exon9:c.873delT:p.F293Sfs*11,Abcg2:NM_001381926:exon9:c.873delT:p.F293Sfs*11"	6qB3	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.364493387	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T2	chr6	113536731	PW1829tail	autochthonous	sgMsh2 aCD4/8	113536731	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	144	2	0	0	exonic	Fancd2	nonsynonymous SNV	"Fancd2:NM_001033244:exon4:c.T217G:p.F73V,Fancd2:NM_001347350:exon4:c.T217G:p.F73V"	6qE3	chr6-3494310-148817892	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.541044872	2	0.999999	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr7	5410606	PW1829tail	autochthonous	sgMsh2 aCD4/8	5410606	C	A	SNV	Mutect2;Vardict	2	0.018	489	0	0	NA	exonic	Vmn1r58	nonsynonymous SNV	Vmn1r58:NM_030739:exon2:c.G624T:p.M208I	7qA1	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.102513765	3	1	TCA	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr7	85564760	PW1829tail	autochthonous	sgMsh2 aCD4/8	85564760	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	450	0	0	NA	exonic	Vmn2r70	nonsynonymous SNV	Vmn2r70:NM_001384914:exon3:c.T1174G:p.L392V	7qD3	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.467007153	2	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr7	105749705	PW1829tail	autochthonous	sgMsh2 aCD4/8	105749705	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.082	106	117	1	0.008547009	exonic	Tpp1	frameshift deletion	Tpp1:NM_009906:exon6:c.516delG:p.L173Cfs*17	7qE3	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.467007153	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1829T2	chr7	112382075	PW1829tail	autochthonous	sgMsh2 aCD4/8	112382075	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	66	17	0	0	exonic	Micalcl	nonsynonymous SNV	"Micalcl:NM_001381862:exon4:c.C1255A:p.Q419K,Micalcl:NM_027587:exon4:c.C1255A:p.Q419K"	7qF1	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.375883806	2	0.8781539	CCA	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr7	120958207	PW1829tail	autochthonous	sgMsh2 aCD4/8	120958207	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	135	6	1	0.166666667	exonic	Cdr2	nonsynonymous SNV	"Cdr2:NM_001354986:exon5:c.A488C:p.K163T,Cdr2:NM_007672:exon5:c.A1094C:p.K365T"	7qF2	chr7-4743149-142989150	5	3	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.421445479	2	0.9993171	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr8	66478020	PW1829tail	autochthonous	sgMsh2 aCD4/8	66478020	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	127	26	0	0	exonic	Tma16	synonymous SNV	"Tma16:NM_001357208:exon6:c.T237G:p.T79T,Tma16:NM_025465:exon6:c.T426G:p.T142T"	8qB3.1	chr8-3153818-126969919	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	0.341712551	2	0.851555	AAG	synonymous	NA	NA	NA	NA
PW1829T2	chr8	84864268	PW1829tail	autochthonous	sgMsh2 aCD4/8	84864268	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	60	55	1	0.018181818	exonic	Farsa	nonsynonymous SNV	Farsa:NM_025648:exon6:c.T634G:p.F212V	8qC3	chr8-3153818-126969919	4	2	2	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	0.9999499	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr9	38606870	PW1829tail	autochthonous	sgMsh2 aCD4/8	38606870	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	159	0	0	NA	exonic	Olfr914	nonsynonymous SNV	Olfr914:NM_146786:exon1:c.C404A:p.A135D	9qA5.1	chr9-3342997-124125834	3	3	0	0.784	4.465043995	POOR GOF (79.1%)	1	0.296150877	3	0.8063301	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chr9	54946088	PW1829tail	autochthonous	sgMsh2 aCD4/8	54946088	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	92	2	0	0	exonic	Hykk	synonymous SNV	Hykk:NM_177351:exon5:c.T693C:p.N231N	9qB	chr9-3342997-124125834	3	3	0	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	0.9999998	ATG	synonymous	NA	NA	NA	NA
PW1829T2	chr9	89603292	PW1829tail	autochthonous	sgMsh2 aCD4/8	89603292	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	89	0	0	NA	exonic	Minar1	nonsynonymous SNV	Minar1:NM_153509:exon2:c.A51C:p.E17D	9qE3.1	chr9-3342997-124125834	3	3	0	0.784	4.465043995	POOR GOF (79.1%)	1	1	1	0.9999997	GTT	nonsynonymous	NA	NA	NA	NA
PW1829T2	chrX	72258525	PW1829tail	autochthonous	sgMsh2 aCD4/8	72258525	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.729	85	3	2	0.666666667	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon7:c.C2059T:p.R687W	XqA7.3	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T2	chrX	133859769	PW1829tail	autochthonous	sgMsh2 aCD4/8	133859769	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.567	31	0	0	NA	exonic	Tnmd	nonsynonymous SNV	Tnmd:NM_022322:exon3:c.A227C:p.K76T	XqE3	NA	NA	NA	NA	0.784	4.465043995	POOR GOF (79.1%)	NA	NA	NA	NA	AAG	nonsynonymous	AGA	12	AGAAGAAGAAGA	NA
PW1829T4	chr1	54990381	PW1829tail	autochthonous	sgMsh2 aCD4/8	54990383	AAG	-	Deletion	Mutect2;Vardict	2	0.028	278	590	9	0.015254237	exonic	Sf3b1	nonframeshift deletion	Sf3b1:NM_031179:exon23:c.3459_3461del:p.F1153del	1qC1.2	chr1-6770919-193194439	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.152216299	NA	NA	CAA	inframe	NA	NA	NA	-3
PW1829T4	chr1	150408874	PW1829tail	autochthonous	sgMsh2 aCD4/8	150408874	A	-	Deletion	Mutect2;Vardict	2	0.053	130	182	0	0	exonic	Tpr	frameshift deletion	Tpr:NM_133780:exon11:c.1311delA:p.K438Nfs*21	1qG1	chr1-6770919-193194439	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.288123708	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1829T4	chr1	173637526	PW1829tail	autochthonous	sgMsh2 aCD4/8	173637526	T	A	SNV	Mutect2;Vardict	2	0.024	279	3	0	0	exonic	Ifi209	nonsynonymous SNV	Ifi209:NM_175026:exon2:c.T221A:p.L74H	1qH3	chr1-6770919-193194439	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.130471113	3	1.62E-08	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr10	4856895	PW1829tail	autochthonous	sgMsh2 aCD4/8	4856895	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	110	0	0	NA	exonic	Esr1	synonymous SNV	"Esr1:NM_001302531:exon5:c.G810A:p.K270K,Esr1:NM_001302533:exon5:c.G810A:p.K270K,Esr1:NM_007956:exon5:c.G810A:p.K270K,Esr1:NM_001302532:exon6:c.G810A:p.K270K"	10qA1	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.848062235	1	0.9999991	AGC	synonymous	NA	NA	NA	NA
PW1829T4	chr10	18625327	PW1829tail	autochthonous	sgMsh2 aCD4/8	18625327	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	40	9	3	0.333333333	exonic	Arfgef3	synonymous SNV	Arfgef3:NM_001033258:exon19:c.C3174T:p.S1058S	10qA3	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	0.9998569	GGG	synonymous	NA	NA	NA	NA
PW1829T4	chr10	24050108	PW1829tail	autochthonous	sgMsh2 aCD4/8	24050108	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.23	353	0	0	NA	exonic	Taar7f	nonsynonymous SNV	Taar7f:NM_001010839:exon1:c.C599T:p.T200I	10qA4	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	1	ACC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr10	91102469	PW1829tail	autochthonous	sgMsh2 aCD4/8	91102469	-	ACATT	Insertion	Mutect2;Vardict	2	0.054	96	32	0	0	exonic	Ikbip	frameshift insertion	Ikbip:NM_027078:exon3:c.1003_1004insACATT:p.K337Tfs*5	10qC2	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.293560005	NA	NA	GGA	frameshift	NA	NA	NA	5
PW1829T4	chr10	93065230	PW1829tail	autochthonous	sgMsh2 aCD4/8	93065230	T	-	Deletion	Strelka2;Vardict	2	0.1111	54	2	1	0.5	exonic	Cfap54	frameshift deletion	Cfap54:NM_001347060:exon4:c.605delA:p.N202Ifs*20	10qC2	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.603972528	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T4	chr10	100466159	PW1829tail	autochthonous	sgMsh2 aCD4/8	100466159	C	G	SNV	Mutect2;Vardict	2	0.063	139	37	4	0.108108108	exonic	Tmtc3	nonsynonymous SNV	"Tmtc3:NM_001033332:exon7:c.G927C:p.W309C,Tmtc3:NM_001110013:exon7:c.G927C:p.W309C"	10qD1	chr10-3119979-130453386	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.342486672	2	0.9982074	TCC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr11	48987642	PW1829tail	autochthonous	sgMsh2 aCD4/8	48987642	C	-	Deletion	Mutect2;Vardict	2	0.07	148	3	0	0	exonic	Tgtp1	frameshift deletion	Tgtp1:NM_011579:exon2:c.235delG:p.V79Wfs*13	11qB1.2	chr11-3133205-69579350	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.380540747	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW1829T4	chr11	73375537	PW1829tail	autochthonous	sgMsh2 aCD4/8	73375537	T	A	SNV	Mutect2;MuSe;Vardict	3	0.061	363	0	0	NA	exonic	Olfr376	nonsynonymous SNV	"Olfr376:NM_146922:exon2:c.T787A:p.L263I,Olfr376:NM_001172686:exon3:c.T796A:p.L266I"	11qB4	chr11-69590981-121956809	3	3	0	0.751	4.082658582	POOR GOF (75.9%)	1	0.331614079	2	0.9999986	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr11	82179700	PW1829tail	autochthonous	sgMsh2 aCD4/8	82179700	G	T	SNV	Mutect2;Vardict	2	0.069	63	0	0	NA	exonic	Ccl1	synonymous SNV	Ccl1:NM_011329:exon1:c.C45A:p.A15A	11qC	chr11-69590981-121956809	3	3	0	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	2	0.9860892	CGG	synonymous	NA	NA	NA	NA
PW1829T4	chr11	105840711	PW1829tail	autochthonous	sgMsh2 aCD4/8	105840711	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	49	27	0	0	exonic	Tanc2	nonsynonymous SNV	Tanc2:NM_181071:exon10:c.C1312T:p.R438C	11qE1	chr11-69590981-121956809	3	3	0	0.751	4.082658582	POOR GOF (75.9%)	1	0.494702971	2	0.9943637	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr12	116407249	PW1829tail	autochthonous	sgMsh2 aCD4/8	116407249	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	256	4	1	0.25	exonic	Ncapg2	nonsynonymous SNV	Ncapg2:NM_133762:exon3:c.C17T:p.A6V	12qF2	chr12-3252726-119465464	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.31530519	2	0.9994831	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr14	28518534	PW1829tail	autochthonous	sgMsh2 aCD4/8	28518534	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	88	10	0	0	exonic	Wnt5a	nonsynonymous SNV	"Wnt5a:NM_001256224:exon4:c.G580A:p.A194T,Wnt5a:NM_009524:exon4:c.G640A:p.A214T"	14qA3	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	3.20E-09	CGC	nonsynonymous	CGCA	8	CGCACGCA	NA
PW1829T4	chr14	50148173	PW1829tail	autochthonous	sgMsh2 aCD4/8	50148173	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	210	0	0	NA	exonic	Olfr729	nonsynonymous SNV	Olfr729:NM_146278:exon1:c.G700A:p.A234T	14qC1	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.173961484	3	0.9998421	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr14	55787401	PW1829tail	autochthonous	sgMsh2 aCD4/8	55787401	G	A	SNV	Mutect2;Vardict	2	0.04	113	12	0	0	exonic	Ripk3	synonymous SNV	"Ripk3:NM_001164107:exon4:c.C321T:p.S107S,Ripk3:NM_001164108:exon4:c.C321T:p.S107S,Ripk3:NM_019955:exon4:c.C513T:p.S171S"	14qC3	chr14-3072210-123592557	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.217451855	3	0.8717389	GGG	synonymous	NA	NA	NA	NA
PW1829T4	chr15	9704496	PW1829tail	autochthonous	sgMsh2 aCD4/8	9704496	A	-	Deletion	Mutect2;Vardict	2	0.048	198	0	0	NA	exonic	Spef2	frameshift deletion	"Spef2:NM_001305044:exon9:c.1230delT:p.F410Lfs*26,Spef2:NM_177123:exon9:c.1230delT:p.F410Lfs*26,Spef2:NM_001305042:exon10:c.1401delT:p.F467Lfs*25"	15qA1	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.260942226	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T4	chr15	10533708	PW1829tail	autochthonous	sgMsh2 aCD4/8	10533708	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	109	0	0	NA	exonic	Ttc23l	nonsynonymous SNV	"Ttc23l:NM_001374772:exon6:c.A748C:p.I250L,Ttc23l:NM_029430:exon6:c.A748C:p.I250L,Ttc23l:NM_001378877:exon7:c.A820C:p.I274L,Ttc23l:NM_001378878:exon7:c.A820C:p.I274L"	15qA1	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.337050376	2	0.9918037	ATC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr15	73565022	PW1829tail	autochthonous	sgMsh2 aCD4/8	73565022	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	145	78	0	0	exonic	Dennd3	nonsynonymous SNV	Dennd3:NM_001081066:exon19:c.A3097G:p.M1033V	15qD3	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.342486672	2	0.9985965	TAT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr15	76374650	PW1829tail	autochthonous	sgMsh2 aCD4/8	76374650	C	A	SNV	Mutect2;Vardict	2	0.033	161	0	0	NA	exonic	Tssk5	nonsynonymous SNV	Tssk5:NM_183099:exon1:c.G35T:p.R12M	15qD3	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.179397781	3	0.9977979	CCT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr15	101737989	PW1829tail	autochthonous	sgMsh2 aCD4/8	101737989	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	148	0	0	NA	exonic	Krt71	nonsynonymous SNV	Krt71:NM_019956:exon6:c.T1064C:p.F355S	15qF2	chr15-3327923-102485857	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.320741486	2	0.9936647	GAA	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr16	5222134	PW1829tail	autochthonous	sgMsh2 aCD4/8	5222134	G	T	SNV	Mutect2;Vardict	2	0.082	53	171	9	0.052631579	exonic	AU021092	nonsynonymous SNV	AU021092:NM_001033220:exon1:c.C125A:p.A42D	16qA1	chr16-4687471-97451700	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.445776303	2	0.995804	GGC	nonsynonymous	T	5	TTTTT	NA
PW1829T4	chr16	56730371	PW1829tail	autochthonous	sgMsh2 aCD4/8	56730371	T	-	Deletion	Mutect2;Vardict	2	0.051	153	2	0	0	exonic	Adgrg7	frameshift deletion	Adgrg7:NM_172825:exon15:c.1977delA:p.V660Ffs*3	16qC1.1	chr16-4687471-97451700	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.277251115	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T4	chr16	59329114	PW1829tail	autochthonous	sgMsh2 aCD4/8	59329114	G	A	SNV	Mutect2;MuSe;Vardict	3	0.066	235	0	0	NA	exonic	Olfr205	synonymous SNV	Olfr205:NM_001011736:exon1:c.C394T:p.L132L	16qC1.3	chr16-4687471-97451700	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.358795561	2	0.9999949	AGA	synonymous	TAGA	8	TAGATAGA	NA
PW1829T4	chr17	19678894	PW1829tail	autochthonous	sgMsh2 aCD4/8	19678894	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	405	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon4:c.A1497G:p.I499M	17qA3.2	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.505575563	2	1	TAC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr17	19694528	PW1829tail	autochthonous	sgMsh2 aCD4/8	19694528	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	415	0	0	NA	exonic	Vmn2r102	nonsynonymous SNV	Vmn2r102:NM_001104564:exon6:c.T2354G:p.F785C	17qA3.2	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.967660756	1	1	TTC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr17	24607524	PW1829tail	autochthonous	sgMsh2 aCD4/8	24607524	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	81	64	17	0.265625	exonic	Tsc2	nonsynonymous SNV	"Tsc2:NM_001039363:exon25:c.G2750A:p.R917H,Tsc2:NM_001286713:exon25:c.G2750A:p.R917H,Tsc2:NM_001286714:exon25:c.G2750A:p.R917H,Tsc2:NM_001286716:exon25:c.G2750A:p.R917H,Tsc2:NM_001286718:exon25:c.G2750A:p.R917H,Tsc2:NM_001286720:exon25:c.G2750A:p.R917H,Tsc2:NM_011647:exon25:c.G2750A:p.R917H"	17qA3.3	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.880680014	1	0.9999932	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr17	33433378	PW1829tail	autochthonous	sgMsh2 aCD4/8	33433378	A	G	SNV	Mutect2;Vardict	2	0.035	155	0	0	NA	exonic	Actl9	synonymous SNV	Actl9:NM_183282:exon1:c.A411G:p.Q137Q	17qB1	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.190270373	3	0.9933614	AAG	synonymous	NA	NA	NA	NA
PW1829T4	chr17	56106656	PW1829tail	autochthonous	sgMsh2 aCD4/8	56106656	G	T	SNV	Mutect2;Vardict	2	0.022	332	0	0	NA	exonic	Plin4	nonsynonymous SNV	"Plin4:NM_001372234:exon5:c.C968A:p.S323Y,Plin4:NM_020568:exon5:c.C968A:p.S323Y"	17qD	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.11959852	3	1.07E-09	AGA	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr17	79710471	PW1829tail	autochthonous	sgMsh2 aCD4/8	79710471	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.084	98	180	7	0.038888889	exonic	Cyp1b1	synonymous SNV	"Cyp1b1:NM_001364889:exon3:c.G1254T:p.T418T,Cyp1b1:NM_009994:exon3:c.G1254T:p.T418T"	17qE3	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.456648896	2	0.9999653	CCG	synonymous	NA	NA	NA	NA
PW1829T4	chr17	87718638	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Strelka2;Vardict	2	0.5072	69	12	1	0.083333333	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077700-90208269	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1829T4	chr18	10541842	PW1829tail	autochthonous	sgMsh2 aCD4/8	10541842	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	83	2	0	0	exonic	Greb1l	synonymous SNV	Greb1l:NM_001083628:exon22:c.C3588A:p.S1196S	18qA1	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	2	0.9955476	CCT	synonymous	TCATCC	14	TCATCCTCATCCTC	NA
PW1829T4	chr18	37422442	PW1829tail	autochthonous	sgMsh2 aCD4/8	37422442	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	394	0	0	NA	exonic	Pcdhb11	nonsynonymous SNV	Pcdhb11:NM_053136:exon1:c.G824A:p.G275D	18qB3	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.19570667	3	0.9999967	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr18	52695343	PW1829tail	autochthonous	sgMsh2 aCD4/8	52695343	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	183	0	0	NA	exonic	Gykl1	nonsynonymous SNV	Gykl1:NM_010293:exon1:c.T1622C:p.V541A	18qD1	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.184834077	3	0.9985498	GTG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr18	53933542	PW1829tail	autochthonous	sgMsh2 aCD4/8	53933542	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	163	207	1	0.004830918	exonic	Csnk1g3	nonsynonymous SNV	Csnk1g3:NM_152809:exon10:c.C1086A:p.N362K	18qD1	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.217451855	3	0.954759	ACC	nonsynonymous	A	5	AAAAA	NA
PW1829T4	chr18	59409937	PW1829tail	autochthonous	sgMsh2 aCD4/8	59409937	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	225	30	0	0	exonic	Chsy3	synonymous SNV	Chsy3:NM_001081328:exon3:c.C2146T:p.L716L	18qD3	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.157652595	3	0.9999875	GCT	synonymous	NA	NA	NA	NA
PW1829T4	chr18	68407619	PW1829tail	autochthonous	sgMsh2 aCD4/8	68407619	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	293	0	0	NA	exonic	Mc2r	nonsynonymous SNV	"Mc2r:NM_001271717:exon3:c.G602A:p.R201H,Mc2r:NM_008560:exon3:c.G602A:p.R201H,Mc2r:NM_001271716:exon4:c.G602A:p.R201H,Mc2r:NM_001301372:exon5:c.G602A:p.R201H"	18qE2	chr18-10093836-83064704	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.31530519	2	0.9998099	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr19	3267259	PW1829tail	autochthonous	sgMsh2 aCD4/8	3267259	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.195	97	25	3	0.12	exonic	Ighmbp2	nonsynonymous SNV	Ighmbp2:NM_009212:exon11:c.G1612A:p.A538T	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	1.28E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr19	12461278	PW1829tail	autochthonous	sgMsh2 aCD4/8	12461278	G	A	SNV	Mutect2;Vardict	2	0.024	226	159	1	0.006289308	exonic	Mpeg1	synonymous SNV	"Mpeg1:NM_001374668:exon2:c.G78A:p.T26T,Mpeg1:NM_010821:exon2:c.G78A:p.T26T"	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.130471113	3	0.9999995	CGG	synonymous	NA	NA	NA	NA
PW1829T4	chr19	16641572	PW1829tail	autochthonous	sgMsh2 aCD4/8	16641572	A	-	Deletion	Mutect2;Vardict	2	0.067	152	59	5	0.084745763	exonic	Vps13a	frameshift deletion	Vps13a:NM_173028:exon63:c.8629delT:p.Y2877Mfs*19	19qA	chr19-3267259-61225035	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.364231858	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T4	chr2	66019502	PW1829tail	autochthonous	sgMsh2 aCD4/8	66019502	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.028	197	0	0	NA	exonic	Csrnp3	synonymous SNV	"Csrnp3:NM_001290665:exon4:c.C471T:p.S157S,Csrnp3:NM_001290666:exon4:c.C180T:p.S60S,Csrnp3:NM_178634:exon5:c.C507T:p.S169S,Csrnp3:NM_153409:exon6:c.C507T:p.S169S"	2qC1.3	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.152216299	3	0.9999679	CCG	synonymous	NA	NA	NA	NA
PW1829T4	chr2	71324096	PW1829tail	autochthonous	sgMsh2 aCD4/8	71324096	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.063	125	30	0	0	exonic	Slc25a12	frameshift deletion	Slc25a12:NM_172436:exon5:c.345delT:p.F115Lfs*30	2qC2	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.342486672	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1829T4	chr2	76897252	PW1829tail	autochthonous	sgMsh2 aCD4/8	76897252	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	114	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_011652:exon59:c.G14463A:p.S4821S,Ttn:NM_001385708:exon61:c.G17484A:p.S5828S"	2qC3	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.347922968	2	0.9963735	CCG	synonymous	CGAG	9	CGAGCGAGC	NA
PW1829T4	chr2	153399446	PW1829tail	autochthonous	sgMsh2 aCD4/8	153399446	G	-	Deletion	Strelka2;Vardict	2	0.0685	73	38	1	0.026315789	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.372386302	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW1829T4	chr2	181597603	PW1829tail	autochthonous	sgMsh2 aCD4/8	181597603	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	87	24	3	0.125	exonic	Samd10	nonsynonymous SNV	"Samd10:NM_001370751:exon2:c.C131T:p.A44V,Samd10:NM_172676:exon2:c.C98T:p.A33V"	2qH4	chr2-4925576-181597603	5	3	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	3.77E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr5	21575148	PW1829tail	autochthonous	sgMsh2 aCD4/8	21575148	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	178	4	0	0	exonic	Lrrc17	synonymous SNV	Lrrc17:NM_028977:exon4:c.C1119T:p.V373V	5qA3	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.201142966	3	0.9923389	TCC	synonymous	NA	NA	NA	NA
PW1829T4	chr5	23473609	PW1829tail	autochthonous	sgMsh2 aCD4/8	23473609	A	-	Deletion	Strelka2;Vardict	2	0.0556	90	206	6	0.029126214	exonic	Kmt2e	frameshift deletion	Kmt2e:NM_026984:exon7:c.685delA:p.S231Vfs*72	5qA3	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.302258079	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1829T4	chr5	34605949	PW1829tail	autochthonous	sgMsh2 aCD4/8	34605949	C	T	SNV	Mutect2;Vardict	2	0.043	109	267	2	0.007490637	exonic	Add1	synonymous SNV	"Add1:NM_001024458:exon4:c.C480T:p.G160G,Add1:NM_001102444:exon4:c.C480T:p.G160G,Add1:NM_001331081:exon4:c.C480T:p.G160G,Add1:NM_001331082:exon4:c.C480T:p.G160G,Add1:NM_001331083:exon4:c.C480T:p.G160G,Add1:NM_001331084:exon4:c.C480T:p.G160G,Add1:NM_001331085:exon4:c.C480T:p.G160G,Add1:NM_001331086:exon4:c.C480T:p.G160G,Add1:NM_001331087:exon4:c.C480T:p.G160G,Add1:NM_013457:exon4:c.C480T:p.G160G,Add1:NM_001331080:exon5:c.C480T:p.G160G"	5qB2	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.233760744	3	0.7156185	GCT	synonymous	NA	NA	NA	NA
PW1829T4	chr5	117912726	PW1829tail	autochthonous	sgMsh2 aCD4/8	117912726	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.106	61	0	0	NA	exonic	Nos1	synonymous SNV	Nos1:NM_008712:exon13:c.C2211T:p.A737A	5qF	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.576247416	2	0.9694507	CCG	synonymous	NA	NA	NA	NA
PW1829T4	chr5	122433486	PW1829tail	autochthonous	sgMsh2 aCD4/8	122433486	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.191	165	128	24	0.1875	exonic	Anapc7	nonsynonymous SNV	Anapc7:NM_019805:exon5:c.C623T:p.A208V	5qF	chr5-3582301-150466497	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	1	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr6	65870318	PW1829tail	autochthonous	sgMsh2 aCD4/8	65870318	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	111	9	1	0.111111111	exonic	Prdm5	nonsynonymous SNV	"Prdm5:NM_029549:exon5:c.G392A:p.R131Q,Prdm5:NM_027547:exon9:c.G944A:p.R315Q"	6qC1	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.951351867	1	1.39E-09	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr6	76919958	PW1829tail	autochthonous	sgMsh2 aCD4/8	76919958	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	189	0	0	NA	exonic	Ctnna2	synonymous SNV	"Ctnna2:NM_001355193:exon16:c.T2217C:p.S739S,Ctnna2:NM_009819:exon16:c.T2217C:p.S739S,Ctnna2:NM_001109764:exon17:c.T2217C:p.S739S,Ctnna2:NM_145732:exon17:c.T2217C:p.S739S"	6qC3	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.244633337	3	0.7367598	CAG	synonymous	NA	NA	NA	NA
PW1829T4	chr6	108518739	PW1829tail	autochthonous	sgMsh2 aCD4/8	108518739	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	91	41	1	0.024390244	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon58:c.G7584A:p.E2528E	6qE1	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.326177783	2	0.9736016	AGA	synonymous	NA	NA	NA	NA
PW1829T4	chr6	121036530	PW1829tail	autochthonous	sgMsh2 aCD4/8	121036530	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	319	14	0	0	exonic	Mical3	synonymous SNV	"Mical3:NM_001270475:exon7:c.C891T:p.H297H,Mical3:NM_153396:exon7:c.C891T:p.H297H"	6qF1	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.532757045	2	1.01E-09	AGT	synonymous	GT	8	GTGTGTGT	NA
PW1829T4	chr6	122078749	PW1829tail	autochthonous	sgMsh2 aCD4/8	122078749	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	199	0	0	NA	exonic	Mug2	synonymous SNV	Mug2:NM_008646:exon27:c.T3390A:p.A1130A	6qF1	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.467521489	2	1.50E-09	CTT	synonymous	NA	NA	NA	NA
PW1829T4	chr6	142565705	PW1829tail	autochthonous	sgMsh2 aCD4/8	142565705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	161	18	0	0	exonic	Kcnj8	nonsynonymous SNV	"Kcnj8:NM_001330363:exon3:c.T1175C:p.M392T,Kcnj8:NM_008428:exon3:c.T1175C:p.M392T"	6qG2	chr6-3994124-148817892	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	1	CAT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr7	8483568	PW1829tail	autochthonous	sgMsh2 aCD4/8	8483568	G	T	SNV	Mutect2;Vardict	2	0.018	343	0	0	NA	exonic	Vmn2r45	synonymous SNV	Vmn2r45:NM_001105075:exon3:c.C720A:p.A240A	7qA1	chr7-4692757-142893198	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.097853335	3	1.00E-09	AGG	synonymous	GCAAA	10	GCAAAGCAAA	NA
PW1829T4	chr7	73490542	PW1829tail	autochthonous	sgMsh2 aCD4/8	73490542	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	95	68	13	0.191176471	exonic	Chd2	nonsynonymous SNV	Chd2:NM_001081345:exon16:c.G1937A:p.G646D	7qD1	chr7-4692757-142893198	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	2	1	1	1.44E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr7	82762551	PW1829tail	autochthonous	sgMsh2 aCD4/8	82762551	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	101	58	0	0	exonic	Efl1	nonsynonymous SNV	"Efl1:NM_001159672:exon18:c.C2147T:p.A716V,Efl1:NM_175317:exon18:c.C2147T:p.A716V"	7qD3	chr7-4692757-142893198	4	3	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.277251115	2	0.8058588	GCT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr8	91300835	PW1829tail	autochthonous	sgMsh2 aCD4/8	91300835	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	127	2	0	0	exonic	Rpgrip1l	nonsynonymous SNV	Rpgrip1l:NM_173431:exon5:c.C575T:p.T192M	8qC4	chr8-3153818-128493272	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	0.353359265	2	0.9985482	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr8	104548207	PW1829tail	autochthonous	sgMsh2 aCD4/8	104548207	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	106	0	0	NA	exonic	Car7	nonsynonymous SNV	"Car7:NM_001301164:exon4:c.G211A:p.A71T,Car7:NM_001301165:exon4:c.G211A:p.A71T,Car7:NM_053070:exon4:c.G379A:p.A127T"	8qD3	chr8-3153818-128493272	4	2	2	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	1.03E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr9	18330708	PW1829tail	autochthonous	sgMsh2 aCD4/8	18330708	T	C	SNV	Mutect2;Vardict	2	0.042	101	4	0	0	exonic	Naalad2	synonymous SNV	"Naalad2:NM_028279:exon16:c.A1785G:p.K595K,Naalad2:NM_001357400:exon18:c.A1899G:p.K633K,Naalad2:NM_001357399:exon19:c.A1899G:p.K633K"	9qA2	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.228324448	3	0.7477615	TTT	synonymous	T	5	TTTTT	NA
PW1829T4	chr9	35053102	PW1829tail	autochthonous	sgMsh2 aCD4/8	35053102	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	71	423	116	0.274231678	exonic	St3gal4	synonymous SNV	St3gal4:NM_009178:exon8:c.G603A:p.E201E	9qA4	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	1	1	0.9999999	TCT	synonymous	NA	NA	NA	NA
PW1829T4	chr9	60587789	PW1829tail	autochthonous	sgMsh2 aCD4/8	60587789	G	A	SNV	Mutect2;Vardict	2	0.081	65	78	0	0	exonic	Lrrc49	nonsynonymous SNV	"Lrrc49:NM_001146046:exon16:c.C1960T:p.P654S,Lrrc49:NM_001311095:exon16:c.C1942T:p.P648S,Lrrc49:NM_001146047:exon17:c.C2140T:p.P714S,Lrrc49:NM_145616:exon17:c.C2158T:p.P720S"	9qB	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.440340007	2	0.9984705	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chr9	95773579	PW1829tail	autochthonous	sgMsh2 aCD4/8	95773579	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.069	126	126	1	0.007936508	exonic	Pls1	frameshift deletion	Pls1:NM_001033210:exon10:c.1119delT:p.F373Lfs*33	9qE3.3	chr9-3342997-124127224	3	2	1	0.751	4.082658582	POOR GOF (75.9%)	1	0.37510445	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T4	chrX	18146439	PW1829tail	autochthonous	sgMsh2 aCD4/8	18146439	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	71	0	0	NA	exonic	Dusp21	nonsynonymous SNV	Dusp21:NM_028568:exon1:c.C491A:p.T164N	XqA1.2	NA	NA	NA	NA	0.751	4.082658582	POOR GOF (75.9%)	NA	NA	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
PW1829T4	chrX	161842792	PW1829tail	autochthonous	sgMsh2 aCD4/8	161842792	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	60	0	0	NA	exonic	Nhs	synonymous SNV	"Nhs:NM_001081052:exon6:c.C1560T:p.D520D,Nhs:NM_001290526:exon7:c.C1623T:p.D541D"	XqF4	NA	NA	NA	NA	0.751	4.082658582	POOR GOF (75.9%)	NA	NA	NA	NA	AGT	synonymous	NA	NA	NA	NA
PW1829T5	chr1	46140059	PW1829tail	autochthonous	sgMsh2 aCD4/8	46140059	T	A	SNV	Mutect2;MuSe;Vardict	3	0.074	351	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon18:c.T2759A:p.L920H	1qC1.1	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.356015167	3	0.9692185	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr1	91355529	PW1829tail	autochthonous	sgMsh2 aCD4/8	91355529	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	77	0	0	NA	exonic	Klhl30	synonymous SNV	Klhl30:NM_027551:exon3:c.C852T:p.D284D	1qD	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	1	1	0.999958	ACG	synonymous	GGA	15	GGAGGAGGACGAGGA	NA
PW1829T5	chr1	133386779	PW1829tail	autochthonous	sgMsh2 aCD4/8	133386779	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.178	46	8	0	0	exonic	Sox13	frameshift deletion	Sox13:NM_011439:exon9:c.987delC:p.S330Afs*67	1qE4	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.856360806	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T5	chr1	163946398	PW1829tail	autochthonous	sgMsh2 aCD4/8	163946398	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	60	1	1	1	exonic	BC055324	synonymous SNV	BC055324:NM_001357049:exon25:c.G2736A:p.R912R	1qH2.1	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.999612	GCC	synonymous	NA	NA	NA	NA
PW1829T5	chr1	165896490	PW1829tail	autochthonous	sgMsh2 aCD4/8	165896490	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	117	16	3	0.1875	exonic	Pou2f1	nonsynonymous SNV	"Pou2f1:NM_001368808:exon11:c.C1156T:p.R386C,Pou2f1:NM_011137:exon11:c.C1225T:p.R409C,Pou2f1:NM_198932:exon11:c.C1225T:p.R409C,Pou2f1:NM_198933:exon11:c.C1192T:p.R398C,Pou2f1:NM_198934:exon11:c.C1192T:p.R398C"	1qH2.3	chr1-4867294-193194439	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.586943923	2	0.9980661	CGT	nonsynonymous	T	5	TTTTT	NA
PW1829T5	chr10	39151233	PW1829tail	autochthonous	sgMsh2 aCD4/8	39151233	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	150	0	0	NA	exonic	Ccn6	synonymous SNV	Ccn6:NM_001127376:exon5:c.T1002A:p.S334S	10qB1	chr10-4030919-130453386	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.384881261	2	0.5551936	AAG	synonymous	AC	9	ACACACACA	NA
PW1829T5	chr10	40223765	PW1829tail	autochthonous	sgMsh2 aCD4/8	40223765	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.095	209	48	2	0.041666667	exonic	Rpf2	frameshift deletion	"Rpf2:NM_001042556:exon10:c.798delA:p.K266Nfs*21,Rpf2:NM_023323:exon10:c.897delA:p.K299Nfs*21"	10qB1	chr10-4030919-130453386	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.457046498	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T5	chr10	80341278	PW1829tail	autochthonous	sgMsh2 aCD4/8	80341278	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.139	48	4	0	0	exonic	Adamtsl5	synonymous SNV	Adamtsl5:NM_001285435:exon13:c.G1335A:p.R445R	10qC1	chr10-4030919-130453386	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.668731191	2	0.6913394	GCC	synonymous	NA	NA	NA	NA
PW1829T5	chr10	128137561	PW1829tail	autochthonous	sgMsh2 aCD4/8	128137561	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	106	70	1	0.014285714	exonic	Rbms2	synonymous SNV	"Rbms2:NM_019711:exon9:c.C792T:p.Y264Y,Rbms2:NM_001039080:exon10:c.C708T:p.Y236Y"	10qD3	chr10-4030919-130453386	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.524400718	2	0.9978189	CGT	synonymous	NA	NA	NA	NA
PW1829T5	chr11	49280973	PW1829tail	autochthonous	sgMsh2 aCD4/8	49280973	T	C	SNV	Mutect2;Vardict	2	0.043	306	0	0	NA	exonic	Olfr1393	nonsynonymous SNV	Olfr1393:NM_146471:exon1:c.T824C:p.L275P	11qB1.2	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.206873678	3	1.32E-09	CTT	nonsynonymous	T	5	TTTTT	NA
PW1829T5	chr11	58051659	PW1829tail	autochthonous	sgMsh2 aCD4/8	58051659	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.194	168	64	0	0	exonic	Larp1	frameshift insertion	Larp1:NM_028451:exon14:c.2406dupC:p.E806Gfs*20	11qB1.3	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.933337058	NA	NA	AAC	frameshift	C	5	CCCCC	1
PW1829T5	chr11	58651570	PW1829tail	autochthonous	sgMsh2 aCD4/8	58651570	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	104	0	0	NA	exonic	Trim58	nonsynonymous SNV	Trim58:NM_001039047:exon6:c.C1355T:p.T452M	11qB1.3	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.365637198	3	0.6725746	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr11	67219939	PW1829tail	autochthonous	sgMsh2 aCD4/8	67219939	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	118	0	0	NA	exonic	Myh1	nonsynonymous SNV	Myh1:NM_030679:exon33:c.G4586A:p.R1529H	11qB3	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr11	68973124	PW1829tail	autochthonous	sgMsh2 aCD4/8	68973124	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	99	15	0	0	exonic	Rangrf	nonsynonymous SNV	"Rangrf:NM_001285441:exon3:c.A368C:p.N123T,Rangrf:NM_001285443:exon3:c.A344C:p.N115T,Rangrf:NM_021329:exon3:c.A344C:p.N115T"	11qB3	chr11-3133205-69579350	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.514778687	2	0.9952862	GTT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr11	82444728	PW1829tail	autochthonous	sgMsh2 aCD4/8	82444728	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.181	44	0	0	NA	exonic	Tmem132e	nonsynonymous SNV	Tmem132e:NM_001304439:exon9:c.T2635G:p.L879V	11qC	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.870793853	1	0.9617141	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr11	89503955	PW1829tail	autochthonous	sgMsh2 aCD4/8	89503955	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	146	0	0	NA	exonic	Ankfn1	nonsynonymous SNV	Ankfn1:NM_001327810:exon7:c.C875T:p.T292M	11qC	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.28384993	3	0.9971903	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr11	95511299	PW1829tail	autochthonous	sgMsh2 aCD4/8	95511299	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	109	2	0	0	exonic	Nxph3	synonymous SNV	Nxph3:NM_130858:exon2:c.G288A:p.V96V	11qD	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.466668529	2	0.9779999	TCA	synonymous	T	7	TTTTTTT	NA
PW1829T5	chr11	119260010	PW1829tail	autochthonous	sgMsh2 aCD4/8	119260010	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.117	91	7	0	0	exonic	Ccdc40	synonymous SNV	Ccdc40:NM_001364767:exon19:c.C3348T:p.R1116R	11qE2	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.562888844	2	0.9959814	GCG	synonymous	NA	NA	NA	NA
PW1829T5	chr11	121207705	PW1829tail	autochthonous	sgMsh2 aCD4/8	121207705	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	105	24	0	0	exonic	Hexdc	nonsynonymous SNV	"Hexdc:NM_001146073:exon1:c.C14T:p.T5M,Hexdc:NM_001001333:exon2:c.C14T:p.T5M"	11qE2	chr11-69600961-121956879	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.327149072	3	0.9162123	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr12	4296110	PW1829tail	autochthonous	sgMsh2 aCD4/8	4296110	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	148	84	9	0.107142857	exonic	Ncoa1	synonymous SNV	Ncoa1:NM_010881:exon12:c.C1236T:p.N412N	12qA1.1	chr12-3236683-119465464	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.211684694	3	0.9999682	TGT	synonymous	TGT	11	TGTTGTTGTTG	NA
PW1829T5	chr12	88795326	PW1829tail	autochthonous	sgMsh2 aCD4/8	88795326	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	76	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.C142T:p.R48C	12qD3	chr12-3236683-119465464	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.461857513	2	0.9201801	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr13	22219783	PW1829tail	autochthonous	sgMsh2 aCD4/8	22219783	A	-	Deletion	Mutect2;Vardict	2	0.045	166	0	0	NA	exonic	Vmn1r193	frameshift deletion	Vmn1r193:NM_134225:exon1:c.38delT:p.F13Sfs*1	13qA3.1	chr13-4065516-119457015	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.216495709	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1829T5	chr13	61201630	PW1829tail	autochthonous	sgMsh2 aCD4/8	61201630	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.384	88	0	0	NA	exonic	Cts6	nonsynonymous SNV	Cts6:NM_021445:exon4:c.T263C:p.L88P	13qB2	chr13-4065516-119457015	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.99999	GAG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr13	95701484	PW1829tail	autochthonous	sgMsh2 aCD4/8	95701484	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	161	11	3	0.272727273	exonic	F2rl2	nonsynonymous SNV	F2rl2:NM_010170:exon2:c.G1036A:p.G346R	13qD1	chr13-4065516-119457015	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	1	1	1.71E-09	GGG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr13	99431514	PW1829tail	autochthonous	sgMsh2 aCD4/8	99431514	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	185	39	2	0.051282051	exonic	Map1b	synonymous SNV	Map1b:NM_008634:exon5:c.G4698A:p.V1566V	13qD1	chr13-4065516-119457015	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.25017282	3	0.9999531	ACA	synonymous	NA	NA	NA	NA
PW1829T5	chr14	31377475	PW1829tail	autochthonous	sgMsh2 aCD4/8	31377475	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	37	15	0	0	exonic	Sh3bp5	frameshift deletion	"Sh3bp5:NM_001347585:exon6:c.808delC:p.R270Gfs*18,Sh3bp5:NM_011894:exon7:c.814delC:p.R272Gfs*18"	14qB	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW1829T5	chr14	50362603	PW1829tail	autochthonous	sgMsh2 aCD4/8	50362603	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	126	0	0	NA	exonic	Tlr11	nonsynonymous SNV	Tlr11:NM_205819:exon2:c.A2045T:p.E682V	14qC1	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.418558371	2	0.8711455	GAG	nonsynonymous	CTGG	8	CTGGCTGG	NA
PW1829T5	chr14	55074590	PW1829tail	autochthonous	sgMsh2 aCD4/8	55074590	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	79	5	2	0.4	exonic	Zfhx2	nonsynonymous SNV	Zfhx2:NM_001039198:exon2:c.G646A:p.G216S	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.769762522	1	0.09826727	CCA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr14	57846984	PW1829tail	autochthonous	sgMsh2 aCD4/8	57846984	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	152	152	26	0.171052632	exonic	Zdhhc20	nonsynonymous SNV	"Zdhhc20:NM_001360098:exon8:c.G673A:p.V225I,Zdhhc20:NM_029492:exon8:c.G673A:p.V225I,Zdhhc20:NM_001360097:exon9:c.G709A:p.V237I"	14qC3	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	2	0.9998455	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr14	69797067	PW1829tail	autochthonous	sgMsh2 aCD4/8	69797067	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.488	47	2	0	0	exonic	Rhobtb2	frameshift deletion	Rhobtb2:NM_153514:exon5:c.708delC:p.K237Sfs*63	14qD2	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T5	chr14	111680268	PW1829tail	autochthonous	sgMsh2 aCD4/8	111680268	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.097	77	0	0	NA	exonic	Slitrk5	synonymous SNV	"Slitrk5:NM_001378768:exon2:c.T1398C:p.G466G,Slitrk5:NM_001378769:exon2:c.T1323C:p.G441G,Slitrk5:NM_001378770:exon2:c.T1323C:p.G441G,Slitrk5:NM_198865:exon2:c.T1323C:p.G441G"	14qE4	chr14-3072210-123592557	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.466668529	2	0.9328348	GTA	synonymous	NA	NA	NA	NA
PW1829T5	chr15	43022559	PW1829tail	autochthonous	sgMsh2 aCD4/8	43022559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	83	1	0	0	exonic	Rspo2	nonsynonymous SNV	"Rspo2:NM_001357956:exon6:c.G700A:p.V234I,Rspo2:NM_001357957:exon6:c.G721A:p.V241I,Rspo2:NM_172815:exon6:c.G700A:p.V234I"	15qB3.1	chr15-5120586-66737870	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.736085412	1	0.7465408	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr15	85867521	PW1829tail	autochthonous	sgMsh2 aCD4/8	85867521	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.084	65	2	0	0	exonic	Gtse1	nonsynonymous SNV	"Gtse1:NM_013882:exon5:c.A914G:p.N305S,Gtse1:NM_001168672:exon6:c.A914G:p.N305S"	15qE2	chr15-66738815-103351727	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.404125324	2	9.59E-05	AAT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr15	94540648	PW1829tail	autochthonous	sgMsh2 aCD4/8	94540648	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	101	6	2	0.333333333	exonic	Pus7l	synonymous SNV	Pus7l:NM_172437:exon2:c.C315T:p.S105S	15qE3	chr15-66738815-103351727	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	1	1	0.9999982	CGG	synonymous	NA	NA	NA	NA
PW1829T5	chr16	5173118	PW1829tail	autochthonous	sgMsh2 aCD4/8	5173118	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.362	20	0	0	NA	exonic	Sec14l5	frameshift deletion	Sec14l5:NM_001127725:exon8:c.922delC:p.L310Cfs*13	16qA1	chr16-4294560-97451700	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	TCC	frameshift	C	6	CCCCCC	-1
PW1829T5	chr16	8696827	PW1829tail	autochthonous	sgMsh2 aCD4/8	8696827	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	248	140	8	0.057142857	exonic	Usp7	nonsynonymous SNV	Usp7:NM_001003918:exon19:c.C2143T:p.R715C	16qA1	chr16-4294560-97451700	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.331960088	3	0.9929225	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr16	36970233	PW1829tail	autochthonous	sgMsh2 aCD4/8	36970233	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.423	81	0	0	NA	exonic	Fbxo40	nonsynonymous SNV	"Fbxo40:NM_001037321:exon2:c.G514A:p.A172T,Fbxo40:NM_001358217:exon3:c.G514A:p.A172T"	16qB3	chr16-4294560-97451700	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.9999751	GCG	nonsynonymous	C	5	CCCCC	NA
PW1829T5	chr16	57161764	PW1829tail	autochthonous	sgMsh2 aCD4/8	57161764	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	196	69	2	0.028985507	exonic	Nit2	synonymous SNV	Nit2:NM_023175:exon5:c.T357C:p.D119D	16qC1.1	chr16-4294560-97451700	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.288660946	3	0.9994131	CAT	synonymous	NA	NA	NA	NA
PW1829T5	chr16	94510857	PW1829tail	autochthonous	sgMsh2 aCD4/8	94510857	C	-	Deletion	Mutect2;Vardict	2	0.056	78	57	3	0.052631579	exonic	Vps26c	frameshift deletion	Vps26c:NM_007834:exon3:c.232delG:p.V78Cfs*1	16qC4	chr16-4294560-97451700	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.269416883	NA	NA	ACG	frameshift	NA	NA	NA	-1
PW1829T5	chr17	21229254	PW1829tail	autochthonous	sgMsh2 aCD4/8	21229254	A	-	Deletion	Strelka2;Vardict	2	0.1781	146	0	0	NA	exonic	Vmn1r234	frameshift deletion	Vmn1r234:NM_134198:exon1:c.429delA:p.A147Hfs*10	17qA3.2	chr17-3077483-90208269	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.856841908	NA	NA	TAA	frameshift	A	10	AAAAAAAAAA	-1
PW1829T5	chr17	33543285	PW1829tail	autochthonous	sgMsh2 aCD4/8	33543285	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	108	31	1	0.032258065	exonic	Adamts10	nonsynonymous SNV	"Adamts10:NM_001329147:exon10:c.A370G:p.T124A,Adamts10:NM_001329143:exon11:c.A370G:p.T124A,Adamts10:NM_001329151:exon11:c.A139G:p.T47A,Adamts10:NM_001329152:exon11:c.A139G:p.T47A,Adamts10:NM_001329153:exon11:c.A133G:p.T45A,Adamts10:NM_001329154:exon11:c.A133G:p.T45A,Adamts10:NM_001329202:exon12:c.A133G:p.T45A,Adamts10:NM_001329203:exon12:c.A463G:p.T155A,Adamts10:NM_172619:exon12:c.A1567G:p.T523A"	17qB1	chr17-3077483-90208269	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.293471962	3	0.9812171	AAC	nonsynonymous	AC	8	ACACACAC	NA
PW1829T5	chr17	58973148	PW1829tail	autochthonous	sgMsh2 aCD4/8	58973148	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	134	0	0	NA	exonic	Pdzph1	nonsynonymous SNV	Pdzph1:NM_027001:exon3:c.C2138T:p.T713I	17qD	chr17-3077483-90208269	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.259794851	3	0.9988087	TGT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr17	87718636	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718640	CAGAC	-	Deletion	Mutect2;Vardict	2	0.428	93	12	1	0.083333333	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2041_2045del:p.Q681Rfs*15	17qE4	chr17-3077483-90208269	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	TCA	frameshift	NA	NA	NA	-5
PW1829T5	chr17	87718638	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Mutect2;Vardict	2	0.696	53	6	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077483-90208269	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1829T5	chr18	40206246	PW1829tail	autochthonous	sgMsh2 aCD4/8	40206246	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.225	67	145	44	0.303448276	exonic	Yipf5	nonsynonymous SNV	Yipf5:NM_023311:exon6:c.G766A:p.V256I	18qB3	chr18-3325290-84965412	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	1	1	0.9998446	ACA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr19	30004238	PW1829tail	autochthonous	sgMsh2 aCD4/8	30004238	-	A	Insertion	Strelka2;Vardict	2	0.0723	83	0	0	NA	exonic	Trpd52l3	frameshift insertion	Trpd52l3:NM_025741:exon1:c.393dupA:p.S133Efs*3	19qC1	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.34783644	NA	NA	TCA	frameshift	NA	NA	NA	1
PW1829T5	chr19	32811749	PW1829tail	autochthonous	sgMsh2 aCD4/8	32811749	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	89	69	2	0.028985507	exonic	Pten	frameshift deletion	Pten:NM_008960:exon6:c.546delA:p.N184Ifs*14	19qC1	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.716841349	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T5	chr19	40038305	PW1829tail	autochthonous	sgMsh2 aCD4/8	40038305	T	C	SNV	Mutect2;Vardict	2	0.029	217	0	0	NA	exonic	Cyp2c54	nonsynonymous SNV	Cyp2c54:NM_206537:exon9:c.A1405G:p.I469V	19qC3	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.139519457	3	1.43E-09	ATA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr19	41128489	PW1829tail	autochthonous	sgMsh2 aCD4/8	41128489	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	150	0	0	NA	exonic	Tll2	nonsynonymous SNV	Tll2:NM_011904:exon7:c.A886G:p.M296V	19qC3	chr19-3628599-60987573	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.466668529	2	0.9949398	ATG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr2	16042230	PW1829tail	autochthonous	sgMsh2 aCD4/8	16042230	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	228	3	0	0	exonic	Malrd1	synonymous SNV	Malrd1:NM_001310455:exon30:c.C5166T:p.I1722I	2qA2	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.293471962	3	0.999719	TCG	synonymous	NA	NA	NA	NA
PW1829T5	chr2	28662507	PW1829tail	autochthonous	sgMsh2 aCD4/8	28662507	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	192	10	0	0	exonic	Tsc1	nonsynonymous SNV	"Tsc1:NM_001289575:exon5:c.G257A:p.R86H,Tsc1:NM_001289576:exon5:c.G257A:p.R86H,Tsc1:NM_022887:exon5:c.G257A:p.R86H"	2qA3	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.40893634	2	0.09687005	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr2	94375163	PW1829tail	autochthonous	sgMsh2 aCD4/8	94375163	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	89	34	15	0.441176471	exonic	Ttc17	synonymous SNV	"Ttc17:NM_001355690:exon7:c.G837A:p.A279A,Ttc17:NM_001355691:exon7:c.G837A:p.A279A,Ttc17:NM_183106:exon7:c.G837A:p.A279A"	2qE1	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.9999912	CCG	synonymous	NA	NA	NA	NA
PW1829T5	chr2	130232372	PW1829tail	autochthonous	sgMsh2 aCD4/8	130232372	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	236	0	0	NA	exonic	Tmc2	synonymous SNV	Tmc2:NM_138655:exon9:c.C984A:p.V328V	2qF1	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.288660946	3	0.9998672	TCA	synonymous	NA	NA	NA	NA
PW1829T5	chr2	156069206	PW1829tail	autochthonous	sgMsh2 aCD4/8	156069206	A	G	SNV	Mutect2;Vardict	2	0.045	120	0	0	NA	exonic	Spag4	nonsynonymous SNV	Spag4:NM_139151:exon11:c.A1153G:p.I385V	2qH1	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.216495709	3	0.999722	AAT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr2	168601505	PW1829tail	autochthonous	sgMsh2 aCD4/8	168601505	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.198	24	0	0	NA	exonic	Nfatc2	frameshift deletion	"Nfatc2:NM_001291168:exon1:c.34delC:p.R12Afs*60,Nfatc2:NM_001291169:exon1:c.34delC:p.R12Afs*60,Nfatc2:NM_001291172:exon1:c.34delC:p.R12Afs*60"	2qH3	chr2-4925576-181511691	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.952581121	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW1829T5	chr3	90602328	PW1829tail	autochthonous	sgMsh2 aCD4/8	90602328	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.477	47	2	2	1	exonic	S100a3	frameshift deletion	"S100a3:NM_001355597:exon3:c.279delC:p.P95Lfs*9,S100a3:NM_001355600:exon3:c.279delC:p.P95Lfs*9,S100a3:NM_001355602:exon3:c.279delC:p.P95Lfs*9,S100a3:NM_011310:exon3:c.279delC:p.P95Lfs*9"	3qF1	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1829T5	chr3	93470792	PW1829tail	autochthonous	sgMsh2 aCD4/8	93470792	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	119	0	0	NA	exonic	Tchhl1	nonsynonymous SNV	Tchhl1:NM_027762:exon3:c.G802T:p.G268W	3qF2.1	chr3-15331914-159913826	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.346393135	3	0.8513842	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr4	65297330	PW1829tail	autochthonous	sgMsh2 aCD4/8	65297330	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	55	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon13:c.C3473T:p.A1158V	4qC1	chr4-5799947-150431620	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.721652365	1	0.5900363	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr4	83681049	PW1829tail	autochthonous	sgMsh2 aCD4/8	83681049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	50	0	0	NA	exonic	Ccdc171	synonymous SNV	"Ccdc171:NM_001355549:exon16:c.C327T:p.R109R,Ccdc171:NM_001355378:exon17:c.C2124T:p.R708R"	4qC3	chr4-5799947-150431620	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.779384554	1	0.8349286	GCA	synonymous	NA	NA	NA	NA
PW1829T5	chr4	138103404	PW1829tail	autochthonous	sgMsh2 aCD4/8	138103404	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	137	83	0	0	exonic	Eif4g3	frameshift deletion	"Eif4g3:NM_001369130:exon6:c.529delA:p.T179Lfs*1,Eif4g3:NM_001355699:exon7:c.562delA:p.T190Lfs*1,Eif4g3:NM_001369131:exon8:c.529delA:p.T179Lfs*1,Eif4g3:NM_001256195:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_001256198:exon9:c.436delA:p.T148Lfs*1,Eif4g3:NM_172703:exon9:c.469delA:p.T159Lfs*1"	4qD3	chr4-5799947-150431620	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.447424466	NA	NA	GAA	frameshift	AG	9	AGAGAGAGA	-1
PW1829T5	chr4	145620608	PW1829tail	autochthonous	sgMsh2 aCD4/8	145620608	G	A	SNV	Mutect2;MuSe;Vardict	3	0.121	209	0	0	NA	exonic	Gm13212	stopgain	Gm13212:NM_001324416:exon3:c.G81A:p.W27X	4qE1	chr4-5799947-150431620	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.582132907	2	0.9999914	GGG	nonsynonymous	GGAATG	12	GGAATGGGAATG	NA
PW1829T5	chr5	21846345	PW1829tail	autochthonous	sgMsh2 aCD4/8	21846345	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.237	179	0	0	NA	exonic	Slc26a5	frameshift insertion	"Slc26a5:NM_001289787:exon3:c.169dupA:p.I57Nfs*12,Slc26a5:NM_030727:exon4:c.169dupA:p.I57Nfs*12"	5qA3	chr5-3558811-110757004	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	1	NA	NA	TAT	frameshift	T	5	TTTTT	1
PW1829T5	chr5	24383604	PW1829tail	autochthonous	sgMsh2 aCD4/8	24383604	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	88	6	0	0	exonic	Nos3	synonymous SNV	Nos3:NM_008713:exon25:c.T3327C:p.H1109H	5qA3	chr5-3558811-110757004	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.298282977	3	0.9559653	ATA	synonymous	NA	NA	NA	NA
PW1829T5	chr5	113865758	PW1829tail	autochthonous	sgMsh2 aCD4/8	113865758	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	110	86	0	0	exonic	Coro1c	nonsynonymous SNV	Coro1c:NM_011779:exon3:c.G199A:p.G67R	5qF	chr5-110773616-151648188	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.254983835	3	0.9968969	CCC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr5	137290370	PW1829tail	autochthonous	sgMsh2 aCD4/8	137290370	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	126	0	0	NA	exonic	Ache	nonsynonymous SNV	"Ache:NM_001290010:exon2:c.G337T:p.G113C,Ache:NM_009599:exon2:c.G337T:p.G113C"	5qG2	chr5-110773616-151648188	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.615810018	2	0.9941247	GGG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr6	43167116	PW1829tail	autochthonous	sgMsh2 aCD4/8	43167116	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	80	0	0	NA	exonic	Olfr437	synonymous SNV	Olfr437:NM_146296:exon1:c.C57T:p.S19S	6qB2.1	chr6-3494310-113068119	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	1	1	0.9999716	GCG	synonymous	NA	NA	NA	NA
PW1829T5	chr6	57646152	PW1829tail	autochthonous	sgMsh2 aCD4/8	57646152	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	110	10	2	0.2	exonic	Herc6	nonsynonymous SNV	Herc6:NM_025992:exon14:c.C1739T:p.A580V	6qB3	chr6-3494310-113068119	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.577321892	2	0.9981473	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr6	70887865	PW1829tail	autochthonous	sgMsh2 aCD4/8	70887865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.164	76	43	12	0.279069767	exonic	Eif2ak3	synonymous SNV	Eif2ak3:NM_010121:exon10:c.C1704T:p.V568V	6qC1	chr6-3494310-113068119	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.789006585	1	0.9419077	TCA	synonymous	NA	NA	NA	NA
PW1829T5	chr6	106712410	PW1829tail	autochthonous	sgMsh2 aCD4/8	106712410	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	101	0	0	NA	exonic	Il5ra	nonsynonymous SNV	Il5ra:NM_008370:exon13:c.T1220C:p.F407S	6qE1	chr6-3494310-113068119	4	3	1	0.837	4.026820194	POOR GOF (79.9%)	1	0.558077829	2	0.9981243	AAA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr6	116701996	PW1829tail	autochthonous	sgMsh2 aCD4/8	116701996	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.105	92	0	0	NA	exonic	Tmem72	frameshift deletion	Tmem72:NM_178768:exon2:c.118delA:p.S40Afs*73	6qE3	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.505156655	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW1829T5	chr6	124580737	PW1829tail	autochthonous	sgMsh2 aCD4/8	124580737	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	325	0	0	NA	exonic	C1rb	nonsynonymous SNV	C1rb:NM_001113356:exon11:c.T1832C:p.V611A	6qF2	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.168385552	3	1.00E-09	GTC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr6	132115147	PW1829tail	autochthonous	sgMsh2 aCD4/8	132115147	C	A	SNV	Mutect2;Vardict	2	0.027	537	0	0	NA	exonic	Gm4736	nonsynonymous SNV	Gm4736:NM_053251:exon3:c.G668T:p.R223M	6qF3	chr6-113104747-145247059	6	4	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.129897426	3	1	CCT	nonsynonymous	G	5	GGGGG	NA
PW1829T5	chr6	145427282	PW1829tail	autochthonous	sgMsh2 aCD4/8	145427282	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	181	0	0	NA	exonic	Lmntd1	nonsynonymous SNV	Lmntd1:NM_028742:exon5:c.C524T:p.S175F	6qG3	chr6-145397053-148817892	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.755329475	1	0.9801545	GGA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	3897413	PW1829tail	autochthonous	sgMsh2 aCD4/8	3897413	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.225	470	0	0	NA	exonic	Gm14548;Pira11;Pira4;Pira6;Pira7	frameshift deletion	"Gm14548:NM_001166672:exon3:c.337delC:p.L113Wfs*4,Gm14548:NM_001384210:exon3:c.337delC:p.L113Wfs*4,Pira11:NM_011088:exon3:c.337delC:p.L113Wfs*4,Pira4:NM_011091:exon3:c.337delC:p.L113Wfs*4,Pira7:NM_011094:exon3:c.337delC:p.L113Wfs*4"	7qA1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T5	chr7	10490744	PW1829tail	autochthonous	sgMsh2 aCD4/8	10490744	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	90	4	0	0	exonic	Zik1	nonsynonymous SNV	Zik1:NM_009577:exon4:c.C425A:p.A142E	7qA1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.288660946	3	0.970724	TGC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	13007869	PW1829tail	autochthonous	sgMsh2 aCD4/8	13007869	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.154	29	7	0	0	exonic	Zbtb45	nonsynonymous SNV	"Zbtb45:NM_001024699:exon2:c.G461A:p.R154H,Zbtb45:NM_001360833:exon2:c.G461A:p.R154H"	7qA1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.740896428	1	0.6060415	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	19277966	PW1829tail	autochthonous	sgMsh2 aCD4/8	19277966	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	78	0	0	NA	exonic	Ppm1n	frameshift deletion	Ppm1n:NM_177691:exon4:c.1187delC:p.P396Qfs*98	7qA3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.44261345	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW1829T5	chr7	26385677	PW1829tail	autochthonous	sgMsh2 aCD4/8	26385677	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.304	244	0	0	NA	exonic	Nlrp9c	stopgain	Nlrp9c:NM_001042612:exon3:c.476delT:p.L159fs*0	7qA3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
PW1829T5	chr7	27172669	PW1829tail	autochthonous	sgMsh2 aCD4/8	27172669	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	29	68	23	0.338235294	exonic	Rab4b	stopgain	Rab4b:NM_029391:exon7:c.C625T:p.Q209X	7qA3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.9781285	TGA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	51861459	PW1829tail	autochthonous	sgMsh2 aCD4/8	51861459	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	76	11	4	0.363636364	exonic	Fancf	nonsynonymous SNV	Fancf:NM_001115087:exon1:c.C796T:p.R266W	7qB4	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.678353223	2	0.7249151	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	79123451	PW1829tail	autochthonous	sgMsh2 aCD4/8	79123451	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	48	2	1	0.5	exonic	Hapln3	nonsynonymous SNV	Hapln3:NM_178255:exon2:c.G43A:p.V15I	7qD2	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	0.9981399	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	86394962	PW1829tail	autochthonous	sgMsh2 aCD4/8	86394962	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.365	124	0	0	NA	exonic	Olfr303	frameshift deletion	Olfr303:NM_146619:exon1:c.535delT:p.C179Vfs*27	7qD3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW1829T5	chr7	92619657	PW1829tail	autochthonous	sgMsh2 aCD4/8	92619658	CT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	140	7	1	0.142857143	exonic	Ankrd42	frameshift deletion	Ankrd42:NM_028665:exon5:c.476_477del:p.E159Vfs*54	7qE1	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	ACT	frameshift	CT	8	CTCTCTCT	-2
PW1829T5	chr7	107036498	PW1829tail	autochthonous	sgMsh2 aCD4/8	107036498	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	136	0	0	NA	exonic	Olfr713	synonymous SNV	Olfr713:NM_147034:exon1:c.C363T:p.F121F	7qE3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.519589703	2	0.9995546	TCC	synonymous	NA	NA	NA	NA
PW1829T5	chr7	126959945	PW1829tail	autochthonous	sgMsh2 aCD4/8	126959945	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	107	7	0	0	exonic	Sez6l2	nonsynonymous SNV	"Sez6l2:NM_001252566:exon8:c.C1363G:p.R455G,Sez6l2:NM_001252567:exon8:c.C1183G:p.R395G,Sez6l2:NM_144926:exon8:c.C1363G:p.R455G"	7qF3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.303093993	3	0.9705755	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	131357603	PW1829tail	autochthonous	sgMsh2 aCD4/8	131357603	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	74	10	0	0	exonic	2310057M21Rik	nonsynonymous SNV	2310057M21Rik:NM_026655:exon4:c.C505T:p.R169W	7qF3	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.356015167	3	0.7008042	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr7	138229918	PW1829tail	autochthonous	sgMsh2 aCD4/8	138229918	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	67	4	0	0	exonic	Tcerg1l	synonymous SNV	Tcerg1l:NM_183289:exon9:c.G1329A:p.P443P	7qF4	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.721652365	1	0.6087294	GCG	synonymous	NA	NA	NA	NA
PW1829T5	chr7	140400563	PW1829tail	autochthonous	sgMsh2 aCD4/8	140400563	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	159	0	0	NA	exonic	Olfr531	nonsynonymous SNV	Olfr531:NM_146953:exon1:c.G482A:p.R161H	7qF4	chr7-3897412-142893198	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	1	1.93E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr8	71685554	PW1829tail	autochthonous	sgMsh2 aCD4/8	71685554	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.399	44	11	0	0	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon19:c.2648delG:p.G884Efs*13,Jak3:NM_010589:exon19:c.2648delG:p.G884Efs*13"	8qB3.3	chr8-3154030-126970168	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW1829T5	chr9	38464460	PW1829tail	autochthonous	sgMsh2 aCD4/8	38464460	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.064	258	0	0	NA	exonic	Olfr904	nonsynonymous SNV	Olfr904:NM_146801:exon1:c.T418A:p.L140M	9qA5.1	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.307905009	3	0.9995457	ATT	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr9	44825429	PW1829tail	autochthonous	sgMsh2 aCD4/8	44825429	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.439	104	11	5	0.454545455	exonic	Kmt2a	frameshift deletion	Kmt2a:NM_001357549:exon22:c.5919delA:p.V1974Cfs*8	9qA5.2	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	2	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T5	chr9	64897246	PW1829tail	autochthonous	sgMsh2 aCD4/8	64897246	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	138	26	1	0.038461538	exonic	Dennd4a	nonsynonymous SNV	Dennd4a:NM_001162917:exon24:c.C3866T:p.T1289M	9qC	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.230928757	3	0.9998105	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T5	chr9	95769123	PW1829tail	autochthonous	sgMsh2 aCD4/8	95769123	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	107	75	2	0.026666667	exonic	Pls1	synonymous SNV	Pls1:NM_001033210:exon11:c.C1230T:p.G410G	9qE3.3	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.44261345	2	0.9346705	CGC	synonymous	NA	NA	NA	NA
PW1829T5	chr9	110711268	PW1829tail	autochthonous	sgMsh2 aCD4/8	110711268	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	77	192	36	0.1875	exonic	Ccdc12	stopgain	Ccdc12:NM_028312:exon7:c.C436T:p.Q146X	9qF2	chr9-3342997-124127055	4	2	2	0.837	4.026820194	POOR GOF (79.9%)	1	0.769762522	1	0.8966688	CCA	nonsynonymous	NA	NA	NA	NA
PW1829T5	chrX	9442650	PW1829tail	autochthonous	sgMsh2 aCD4/8	9442650	C	T	SNV	Mutect2;Vardict	2	0.125	34	33	0	0	exonic	Cybb	synonymous SNV	Cybb:NM_007807:exon11:c.G1344A:p.T448T	XqA1.1	NA	NA	NA	NA	0.837	4.026820194	POOR GOF (79.9%)	NA	NA	NA	NA	GCG	synonymous	NA	NA	NA	NA
PW1829T6	chr1	132122038	PW1829tail	autochthonous	sgMsh2 aCD4/8	132122038	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	38	24	12	0.5	exonic	Cdk18	nonsynonymous SNV	Cdk18:NM_008795:exon3:c.A203G:p.E68G	1qE4	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	0.954742937	1	0.9736118	CTC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr1	153825765	PW1829tail	autochthonous	sgMsh2 aCD4/8	153825765	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	185	0	0	NA	exonic	Rgsl1	synonymous SNV	"Rgsl1:NM_001243223:exon6:c.C942T:p.N314N,Rgsl1:NM_001368270:exon7:c.C1047T:p.N349N"	1qG3	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	0.161498805	3	1.21E-08	CGT	synonymous	NA	NA	NA	NA
PW1829T6	chr1	161970776	PW1829tail	autochthonous	sgMsh2 aCD4/8	161970776	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	194	36	0	0	exonic	Pigc	nonsynonymous SNV	"Pigc:NM_001039045:exon2:c.G326A:p.R109Q,Pigc:NM_026078:exon2:c.G326A:p.R109Q"	1qH2.1	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	0.15674884	3	3.68E-09	CGG	nonsynonymous	GAA	8	GAAGAAGA	NA
PW1829T6	chr1	173972374	PW1829tail	autochthonous	sgMsh2 aCD4/8	173972374	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.244	40	0	0	NA	exonic	Ifi202b	frameshift deletion	"Ifi202b:NM_008327:exon4:c.540delA:p.V181fs*0,Ifi202b:NM_011940:exon4:c.540delA:p.V181fs*0"	1qH3	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T6	chr1	177447158	PW1829tail	autochthonous	sgMsh2 aCD4/8	177447158	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	165	51	0	0	exonic	Zbtb18	nonsynonymous SNV	"Zbtb18:NM_013915:exon1:c.A56G:p.H19R,Zbtb18:NM_001012330:exon2:c.A83G:p.H28R,Zbtb18:NM_001355099:exon2:c.A56G:p.H19R,Zbtb18:NM_001355102:exon2:c.A56G:p.H19R,Zbtb18:NM_001355103:exon2:c.A83G:p.H28R,Zbtb18:NM_001355100:exon3:c.A56G:p.H19R,Zbtb18:NM_001355098:exon4:c.A83G:p.H28R,Zbtb18:NM_001355101:exon4:c.A56G:p.H19R"	1qH4	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	0.213748419	3	0.9999887	CAC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr1	179411772	PW1829tail	autochthonous	sgMsh2 aCD4/8	179411772	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	107	34	6	0.176470588	exonic	Smyd3	nonsynonymous SNV	Smyd3:NM_027188:exon3:c.C242T:p.P81L	1qH4	chr1-4839315-195062457	4	2	2	0.838	3.980470555	NA	1	0.650745186	2	0.9920286	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr10	82738384	PW1829tail	autochthonous	sgMsh2 aCD4/8	82738384	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	73	20	0	0	exonic	Hcfc2	nonsynonymous SNV	"Hcfc2:NM_001081218:exon13:c.G1771T:p.G591C,Hcfc2:NM_001368720:exon13:c.G1771T:p.G591C"	10qC1	chr10-3945965-130453386	4	3	1	0.838	3.980470555	NA	1	0.36099733	2	0.7537774	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr10	112092469	PW1829tail	autochthonous	sgMsh2 aCD4/8	112092469	A	-	Deletion	Mutect2;Vardict	2	0.038	192	0	0	NA	exonic	Glipr1l2	frameshift deletion	"Glipr1l2:NM_001347157:exon2:c.268delA:p.K91Nfs*9,Glipr1l2:NM_026223:exon2:c.268delA:p.K91Nfs*9"	10qD2	chr10-3945965-130453386	4	3	1	0.838	3.980470555	NA	1	0.180498665	NA	NA	GAA	frameshift	G	5	GGGGG	-1
PW1829T6	chr11	31872817	PW1829tail	autochthonous	sgMsh2 aCD4/8	31872819	CTT	-	Deletion	Mutect2;Vardict	2	0.027	127	49	1	0.020408163	exonic	Cpeb4	nonframeshift deletion	"Cpeb4:NM_001290676:exon1:c.530_532del:p.S180del,Cpeb4:NM_001290678:exon1:c.530_532del:p.S180del,Cpeb4:NM_026252:exon1:c.530_532del:p.S180del"	11qA4	chr11-3133205-33843469	4	2	2	0.838	3.980470555	NA	1	0.128249051	NA	NA	CCT	inframe	NA	NA	NA	-3
PW1829T6	chr11	31920519	PW1829tail	autochthonous	sgMsh2 aCD4/8	31920520	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	128	51	0	0	exonic	Cpeb4	frameshift deletion	"Cpeb4:NM_001290678:exon3:c.1318_1319del:p.R441Sfs*15,Cpeb4:NM_001290676:exon4:c.1369_1370del:p.R458Sfs*15,Cpeb4:NM_026252:exon5:c.1393_1394del:p.R466Sfs*15"	11qA4	chr11-3133205-33843469	4	2	2	0.838	3.980470555	NA	1	0.546245959	NA	NA	GGA	frameshift	NA	NA	NA	-2
PW1829T6	chr11	59133099	PW1829tail	autochthonous	sgMsh2 aCD4/8	59133099	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.096	66	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon4:c.1744delG:p.D582Ifs*31,Obscn:NM_199152:exon4:c.1744delG:p.D582Ifs*31"	11qB1.3	chr11-58816716-62553345	4	2	2	0.838	3.980470555	NA	1	0.455996627	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW1829T6	chr11	67298562	PW1829tail	autochthonous	sgMsh2 aCD4/8	67298562	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	59	0	0	NA	exonic	Myh8	nonsynonymous SNV	Myh8:NM_177369:exon27:c.A3563G:p.H1188R	11qB3	chr11-67024886-69579350	4	2	2	0.838	3.980470555	NA	1	0.432246802	2	0.9648078	CAC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr11	68533674	PW1829tail	autochthonous	sgMsh2 aCD4/8	68533674	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	60	0	0	NA	exonic	Pik3r6	frameshift deletion	"Pik3r6:NM_001004435:exon11:c.1104delG:p.G370Afs*56,Pik3r6:NM_001081566:exon11:c.1104delG:p.G370Afs*56"	11qB3	chr11-67024886-69579350	4	2	2	0.838	3.980470555	NA	1	0.546245959	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T6	chr11	68992999	PW1829tail	autochthonous	sgMsh2 aCD4/8	68992999	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	116	14	1	0.071428571	exonic	Pfas	frameshift deletion	Pfas:NM_001159519:exon16:c.1831delA:p.T611Lfs*7	11qB3	chr11-67024886-69579350	4	2	2	0.838	3.980470555	NA	1	0.840743781	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW1829T6	chr11	69745687	PW1829tail	autochthonous	sgMsh2 aCD4/8	69745687	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	118	40	1	0.025	exonic	Polr2a	nonsynonymous SNV	Polr2a:NM_001291068:exon8:c.T1217C:p.V406A	11qB3	chr11-69590981-70728663	4	2	2	0.838	3.980470555	NA	1	0.356247365	2	0.816499	TAC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr11	94350958	PW1829tail	autochthonous	sgMsh2 aCD4/8	94350958	C	T	SNV	Mutect2;Vardict	2	0.11	38	41	5	0.12195122	exonic	Abcc3	nonsynonymous SNV	"Abcc3:NM_001363187:exon29:c.G4246A:p.A1416T,Abcc3:NM_001363189:exon29:c.G4171A:p.A1391T,Abcc3:NM_029600:exon29:c.G4243A:p.A1415T"	11qD	chr11-82883757-96963708	4	2	2	0.838	3.980470555	NA	1	0.522496135	2	0.009826172	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr11	95750134	PW1829tail	autochthonous	sgMsh2 aCD4/8	95750134	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.097	162	47	0	0	exonic	Zfp652	frameshift deletion	Zfp652:NM_201609:exon1:c.884delA:p.N297Tfs*106	11qD	chr11-82883757-96963708	4	2	2	0.838	3.980470555	NA	1	0.460746592	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1829T6	chr12	21340497	PW1829tail	autochthonous	sgMsh2 aCD4/8	21340497	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.095	105	67	1	0.014925373	exonic	Adam17	frameshift deletion	"Adam17:NM_001291871:exon10:c.452delA:p.N151Ifs*31,Adam17:NM_009615:exon10:c.1166delA:p.N389Ifs*31,Adam17:NM_001277266:exon11:c.1223delA:p.N408Ifs*31"	12qA1.3	chr12-3237715-119465464	4	2	2	0.838	3.980470555	NA	1	0.451246662	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T6	chr12	55741475	PW1829tail	autochthonous	sgMsh2 aCD4/8	55741475	T	-	Deletion	Mutect2;Vardict	2	0.059	131	13	0	0	exonic	Ralgapa1	frameshift deletion	"Ralgapa1:NM_001003719:exon14:c.1822delA:p.S608Afs*1,Ralgapa1:NM_001112714:exon14:c.1822delA:p.S608Afs*1,Ralgapa1:NM_001286263:exon14:c.1822delA:p.S608Afs*1,Ralgapa1:NM_001368814:exon14:c.1822delA:p.S608Afs*1,Ralgapa1:NM_019994:exon14:c.1822delA:p.S608Afs*1"	12qC1	chr12-3237715-119465464	4	2	2	0.838	3.980470555	NA	1	0.280247927	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T6	chr12	91267000	PW1829tail	autochthonous	sgMsh2 aCD4/8	91267000	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	115	3	0	0	exonic	Cep128	synonymous SNV	Cep128:NM_181815:exon15:c.C1293A:p.T431T	12qD3	chr12-3237715-119465464	4	2	2	0.838	3.980470555	NA	1	0.631745327	2	0.9980224	AGG	synonymous	NA	NA	NA	NA
PW1829T6	chr13	3590466	PW1829tail	autochthonous	sgMsh2 aCD4/8	3590466	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	123	9	1	0.111111111	exonic	Tasor2	nonsynonymous SNV	"Tasor2:NM_001360838:exon10:c.G670A:p.A224T,Tasor2:NM_134063:exon10:c.G670A:p.A224T"	13qA1	NA	NA	NA	NA	0.838	3.980470555	NA	NA	NA	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	14317261	PW1829tail	autochthonous	sgMsh2 aCD4/8	14317261	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	139	3	0	0	exonic	Hecw1	nonsynonymous SNV	Hecw1:NM_001081348:exon10:c.C1145G:p.S382C	13qA1	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.612745467	2	0.9998329	AGA	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	22042884	PW1829tail	autochthonous	sgMsh2 aCD4/8	22042884	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	164	0	0	NA	exonic	H2ac11	nonsynonymous SNV	H2ac11:NM_178186:exon1:c.C44T:p.A15V	13qA3.1	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.764744343	1	0.9101745	GGC	nonsynonymous	CTTGGC	12	CTTGGCCTTGGC	NA
PW1829T6	chr13	33880158	PW1829tail	autochthonous	sgMsh2 aCD4/8	33880158	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	164	0	0	NA	exonic	Serpinb6c	nonsynonymous SNV	"Serpinb6c:NM_001382852:exon7:c.T913G:p.F305V,Serpinb6c:NM_148942:exon7:c.T913G:p.F305V"	13qA3.3	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.598495573	2	0.9999877	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	60761101	PW1829tail	autochthonous	sgMsh2 aCD4/8	60761101	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	112	46	5	0.108695652	exonic	Dapk1	nonsynonymous SNV	"Dapk1:NM_001285917:exon26:c.T3527C:p.I1176T,Dapk1:NM_029653:exon26:c.T3527C:p.I1176T,Dapk1:NM_134062:exon26:c.T3527C:p.I1176T"	13qB2	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.237498243	3	0.9979969	ATC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	63340468	PW1829tail	autochthonous	sgMsh2 aCD4/8	63340468	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	67	9	0	0	exonic	Fancc	frameshift deletion	"Fancc:NM_001282942:exon7:c.406delA:p.I136Lfs*34,Fancc:NM_001042673:exon8:c.697delA:p.I233Lfs*34,Fancc:NM_001347514:exon8:c.697delA:p.I233Lfs*34,Fancc:NM_007985:exon8:c.697delA:p.I233Lfs*34,Fancc:NM_001347515:exon9:c.763delA:p.I255Lfs*34"	13qB3	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.503496275	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T6	chr13	68566243	PW1829tail	autochthonous	sgMsh2 aCD4/8	68566243	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	66	7	0	0	exonic	Mtrr	nonsynonymous SNV	"Mtrr:NM_001308475:exon11:c.G1376A:p.R459H,Mtrr:NM_172480:exon11:c.G1376A:p.R459H"	13qB3	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	2	1	1	0.9997444	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	70602369	PW1829tail	autochthonous	sgMsh2 aCD4/8	70602369	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	171	36	1	0.027777778	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.G5597A:p.R1866H	13qC1	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.180498665	3	0.9999997	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr13	94471808	PW1829tail	autochthonous	sgMsh2 aCD4/8	94471808	A	-	Deletion	Mutect2;Vardict	2	0.067	195	109	0	0	exonic	Ap3b1	frameshift deletion	Ap3b1:NM_009680:exon16:c.1786delA:p.I598Sfs*2	13qC3	chr13-5861853-119495179	4	3	1	0.838	3.980470555	NA	1	0.318247646	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW1829T6	chr14	120022009	PW1829tail	autochthonous	sgMsh2 aCD4/8	120022009	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	127	0	0	NA	exonic	Oxgr1	nonsynonymous SNV	Oxgr1:NM_001001490:exon4:c.T785C:p.V262A	14qE4	chr14-3072210-123592557	4	2	2	0.838	3.980470555	NA	1	0.560495854	2	0.9999878	GAC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr14	122534398	PW1829tail	autochthonous	sgMsh2 aCD4/8	122534398	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	38	17	10	0.588235294	exonic	Pcca	nonsynonymous SNV	Pcca:NM_144844:exon1:c.T32G:p.L11R	14qE5	chr14-3072210-123592557	4	2	2	0.838	3.980470555	NA	1	1	1	0.98865	CTG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr15	12458123	PW1829tail	autochthonous	sgMsh2 aCD4/8	12458123	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	193	1	0	0	exonic	Pdzd2	nonsynonymous SNV	Pdzd2:NM_001081064:exon4:c.A653T:p.K218M	15qA1	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	0.569995783	2	0.9999999	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr15	65867299	PW1829tail	autochthonous	sgMsh2 aCD4/8	65867299	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	240	95	11	0.115789474	exonic	Efr3a	nonsynonymous SNV	"Efr3a:NM_001356582:exon22:c.A2226T:p.Q742H,Efr3a:NM_133766:exon22:c.A2334T:p.Q778H"	15qD1	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	0.246998173	3	0.9999938	AAA	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr15	78673711	PW1829tail	autochthonous	sgMsh2 aCD4/8	78673711	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.242	147	0	0	NA	exonic	Elfn2	nonsynonymous SNV	"Elfn2:NM_001358692:exon2:c.G635A:p.R212H,Elfn2:NM_183141:exon2:c.G635A:p.R212H"	15qE1	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	1	1	5.25E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr15	93254497	PW1829tail	autochthonous	sgMsh2 aCD4/8	93254497	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.27	108	9	0	0	exonic	Gxylt1	frameshift deletion	"Gxylt1:NM_001033275:exon4:c.560delT:p.L187Yfs*10,Gxylt1:NM_001357006:exon4:c.560delT:p.L187Yfs*10,Gxylt1:NM_001346785:exon5:c.653delT:p.L218Yfs*10"	15qE3	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T6	chr15	95232547	PW1829tail	autochthonous	sgMsh2 aCD4/8	95232547	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	76	0	0	NA	exonic	Nell2	nonsynonymous SNV	"Nell2:NM_001356951:exon17:c.A1944C:p.K648N,Nell2:NM_001289653:exon18:c.A1944C:p.K648N,Nell2:NM_001356950:exon18:c.A1944C:p.K648N"	15qE3	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	0.422746873	2	0.9792941	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr15	101624750	PW1829tail	autochthonous	sgMsh2 aCD4/8	101624750	C	-	Deletion	Mutect2;Vardict	2	0.036	176	0	0	NA	exonic	Gm5414	frameshift deletion	Gm5414:NM_001003670:exon7:c.1241delG:p.G414Afs*5	15qF2	chr15-3327923-103439122	4	2	2	0.838	3.980470555	NA	1	0.170998735	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW1829T6	chr17	68777876	PW1829tail	autochthonous	sgMsh2 aCD4/8	68777876	C	T	SNV	Mutect2;Vardict	2	0.031	183	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon21:c.C1781T:p.A594V	17qE1.2	chr17-3077483-90208269	4	2	2	0.838	3.980470555	NA	1	0.147248911	3	4.03E-09	GCA	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr17	75348815	PW1829tail	autochthonous	sgMsh2 aCD4/8	75348815	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	67	6	0	0	exonic	Ltbp1	nonsynonymous SNV	"Ltbp1:NM_001331233:exon21:c.C2821T:p.R941C,Ltbp1:NM_001331235:exon21:c.C2662T:p.R888C,Ltbp1:NM_001331237:exon21:c.C2665T:p.R889C,Ltbp1:NM_206958:exon21:c.C2824T:p.R942C,Ltbp1:NM_019919:exon25:c.C3778T:p.R1260C"	17qE2	chr17-3077483-90208269	4	2	2	0.838	3.980470555	NA	1	0.408496978	2	0.9453753	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr17	87718638	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718644	GACCGGG	-	Deletion	Strelka2;Vardict	2	0.3387	62	4	0	0	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2043_2049del:p.T682fs*0	17qE4	chr17-3077483-90208269	4	2	2	0.838	3.980470555	NA	2	1	NA	NA	AGA	frameshift	NA	NA	NA	-7
PW1829T6	chr18	37722266	PW1829tail	autochthonous	sgMsh2 aCD4/8	37722266	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.285	176	0	0	NA	exonic	Pcdhgb4	synonymous SNV	Pcdhgb4:NM_033576:exon1:c.G1713A:p.A571A	18qB3	chr18-11715718-88974479	4	2	2	0.838	3.980470555	NA	1	1	1	1.08E-09	CGC	synonymous	NA	NA	NA	NA
PW1829T6	chr18	46780690	PW1829tail	autochthonous	sgMsh2 aCD4/8	46780690	G	-	Deletion	Mutect2;Vardict	2	0.045	180	93	0	0	exonic	Ap3s1	frameshift deletion	"Ap3s1:NM_001303015:exon5:c.375delG:p.G127Efs*7,Ap3s1:NM_009681:exon5:c.375delG:p.G127Efs*7"	18qC	chr18-11715718-88974479	4	2	2	0.838	3.980470555	NA	1	0.213748419	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T6	chr19	13502996	PW1829tail	autochthonous	sgMsh2 aCD4/8	13502996	T	G	SNV	Mutect2;Vardict	2	0.036	530	0	0	NA	exonic	Olfr1477	nonsynonymous SNV	Olfr1477:NM_146696:exon2:c.T652G:p.L218V	19qA	chr19-4320845-60987573	4	2	2	0.838	3.980470555	NA	1	0.170998735	3	1	CTT	nonsynonymous	CTTA	10	CTTACTTACT	NA
PW1829T6	chr2	17411153	PW1829tail	autochthonous	sgMsh2 aCD4/8	17411153	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	234	3	0	0	exonic	Nebl	nonsynonymous SNV	Nebl:NM_001362722:exon11:c.C944A:p.S315Y	2qA3	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.137748981	3	1.00E-09	GGA	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr2	72441924	PW1829tail	autochthonous	sgMsh2 aCD4/8	72441924	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	133	32	1	0.03125	exonic	Map3k20	nonsynonymous SNV	Map3k20:NM_023057:exon20:c.C2395T:p.R799W	2qC3	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.246998173	3	0.9987067	GCG	nonsynonymous	GGC	8	GGCGGCGG	NA
PW1829T6	chr2	86890864	PW1829tail	autochthonous	sgMsh2 aCD4/8	86890864	A	G	SNV	Mutect2;Vardict	2	0.026	301	0	0	NA	exonic	Olfr1097	nonsynonymous SNV	Olfr1097:NM_146843:exon2:c.T310C:p.F104L	2qD	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.123499086	3	1	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr2	87575679	PW1829tail	autochthonous	sgMsh2 aCD4/8	87575679	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.019	531	0	0	NA	exonic	Olfr1129	synonymous SNV	Olfr1129:NM_001011836:exon1:c.G594A:p.T198T	2qD	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.090249332	3	1	CGT	synonymous	NA	NA	NA	NA
PW1829T6	chr2	89817221	PW1829tail	autochthonous	sgMsh2 aCD4/8	89817221	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.282	45	0	0	NA	exonic	Olfr1255	frameshift deletion	Olfr1255:NM_146977:exon1:c.894delA:p.N300Mfs*2	2qE1	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	1	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T6	chr2	110731278	PW1829tail	autochthonous	sgMsh2 aCD4/8	110731278	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.435	122	0	0	NA	exonic	Muc15	nonsynonymous SNV	"Muc15:NM_001290786:exon2:c.G58A:p.A20T,Muc15:NM_172979:exon2:c.G58A:p.A20T"	2qE3	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	2	1	1	0.9999999	TGC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr2	121591709	PW1829tail	autochthonous	sgMsh2 aCD4/8	121591709	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	223	0	0	NA	exonic	Frmd5	synonymous SNV	"Frmd5:NM_001360084:exon2:c.A156G:p.L52L,Frmd5:NM_172673:exon2:c.A156G:p.L52L"	2qE5	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.717244694	2	0.8689357	GTA	synonymous	NA	NA	NA	NA
PW1829T6	chr2	130173053	PW1829tail	autochthonous	sgMsh2 aCD4/8	130173053	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	76	141	8	0.056737589	exonic	Snrpb	nonsynonymous SNV	Snrpb:NM_009225:exon5:c.G542A:p.R181Q	2qF1	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.346747435	2	0.6327719	TCG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr2	140168118	PW1829tail	autochthonous	sgMsh2 aCD4/8	140168118	T	-	Deletion	Strelka2;Vardict	2	0.2182	55	56	2	0.035714286	exonic	Esf1	frameshift deletion	Esf1:NM_001081090:exon2:c.297delA:p.K99Nfs*29	2qF3	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	1	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
PW1829T6	chr2	165001774	PW1829tail	autochthonous	sgMsh2 aCD4/8	165001774	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	81	22	3	0.136363636	exonic	Ncoa5	synonymous SNV	Ncoa5:NM_144892:exon8:c.G1548A:p.L516L	2qH3	chr2-4925576-181684255	4	2	2	0.838	3.980470555	NA	1	0.688744905	2	0.09250385	CCA	synonymous	NA	NA	NA	NA
PW1829T6	chr3	19144391	PW1829tail	autochthonous	sgMsh2 aCD4/8	19144391	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.292	222	41	4	0.097560976	exonic	Armc1	frameshift deletion	"Armc1:NM_001357689:exon4:c.404delT:p.L135Wfs*10,Armc1:NM_028840:exon4:c.404delT:p.L135Wfs*10"	3qA2	chr3-5397880-159913826	4	2	2	0.838	3.980470555	NA	1	1	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW1829T6	chr3	64118819	PW1829tail	autochthonous	sgMsh2 aCD4/8	64118819	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	222	0	0	NA	exonic	Vmn2r2	nonsynonymous SNV	"Vmn2r2:NM_001104592:exon4:c.G1429A:p.G477R,Vmn2r2:NM_001385025:exon5:c.G1681A:p.G561R"	3qE1	chr3-5397880-159913826	4	2	2	0.838	3.980470555	NA	1	0.16624877	3	1.52E-09	CCC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr3	64504606	PW1829tail	autochthonous	sgMsh2 aCD4/8	64504606	A	C	SNV	Mutect2;Strelka2;MuSe	3	0.291	22	0	0	NA	exonic	Vmn2r5	synonymous SNV	"Vmn2r5:NM_001104618:exon2:c.T279G:p.T93T,Vmn2r5:NM_001385126:exon3:c.T540G:p.T180T"	3qE1	chr3-5397880-159913826	4	2	2	0.838	3.980470555	NA	1	1	1	0.0916927	AAG	synonymous	NA	NA	NA	NA
PW1829T6	chr3	119412171	PW1829tail	autochthonous	sgMsh2 aCD4/8	119412171	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	215	0	0	NA	exonic	Dpyd	nonsynonymous SNV	Dpyd:NM_170778:exon21:c.A2660T:p.K887M	3qG1	chr3-5397880-159913826	4	2	2	0.838	3.980470555	NA	1	0.151998876	3	1.18E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr4	43023464	PW1829tail	autochthonous	sgMsh2 aCD4/8	43023464	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	127	9	0	0	exonic	Pigo	nonsynonymous SNV	"Pigo:NM_020035:exon3:c.G709A:p.A237T,Pigo:NM_001305386:exon4:c.G685A:p.A229T,Pigo:NM_001305387:exon4:c.G685A:p.A229T"	4qA5	chr4-5799947-155091012	4	2	2	0.838	3.980470555	NA	1	0.204248489	3	0.9999224	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr4	121148494	PW1829tail	autochthonous	sgMsh2 aCD4/8	121148494	T	-	Deletion	Mutect2;Vardict	2	0.037	284	55	3	0.054545455	exonic	Rlf	frameshift deletion	Rlf:NM_001346660:exon8:c.3618delA:p.K1206Nfs*9	4qD2.2	chr4-5799947-155091012	4	2	2	0.838	3.980470555	NA	1	0.1757487	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T6	chr4	151861669	PW1829tail	autochthonous	sgMsh2 aCD4/8	151861671	TCC	-	Deletion	Strelka2;Vardict	2	0.1875	16	50	0	0	exonic	Camta1	frameshift deletion	"Camta1:NM_001195565:wholegene,Camta1:NM_001081557:wholegene"	4qE2	chr4-5799947-155091012	4	2	2	0.838	3.980470555	NA	1	0.890618412	NA	NA	ATC	frameshift	TCC	14	TCCTCCTCCTCCTC	-3
PW1829T6	chr5	8993526	PW1829tail	autochthonous	sgMsh2 aCD4/8	8993526	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	222	47	2	0.042553191	exonic	Crot	stopgain	Crot:NM_023733:exon3:c.95delT:p.L32fs*0	5qA1	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.51774617	NA	NA	TAA	nonsynonymous	T	7	TTTTTTT	-1
PW1829T6	chr5	23450286	PW1829tail	autochthonous	sgMsh2 aCD4/8	23450286	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	336	63	4	0.063492063	exonic	Kmt2e	frameshift deletion	Kmt2e:NM_026984:exon2:c.21delG:p.V9Lfs*19	5qA3	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.531996065	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T6	chr5	33657629	PW1829tail	autochthonous	sgMsh2 aCD4/8	33657629	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.487	40	18	6	0.333333333	exonic	Tmem129	nonsynonymous SNV	Tmem129:NM_026698:exon1:c.C199T:p.P67S	5qB2	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	2	1	1	0.9913273	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr5	34842840	PW1829tail	autochthonous	sgMsh2 aCD4/8	34842840	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	201	5	0	0	exonic	Htt	nonsynonymous SNV	Htt:NM_010414:exon29:c.G3746A:p.R1249H	5qB2	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.151998876	3	1.76E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr5	107419788	PW1829tail	autochthonous	sgMsh2 aCD4/8	107419788	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	239	4	0	0	exonic	Ephx4	nonsynonymous SNV	"Ephx4:NM_001001804:exon5:c.G611A:p.R204Q,Ephx4:NM_001379224:exon5:c.G332A:p.R111Q,Ephx4:NM_001379225:exon5:c.G332A:p.R111Q"	5qE5	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.346747435	2	0.8495256	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr5	109090469	PW1829tail	autochthonous	sgMsh2 aCD4/8	109090469	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	302	0	0	NA	exonic	Vmn2r12	synonymous SNV	"Vmn2r12:NM_001104623:exon4:c.A1404G:p.P468P,Vmn2r12:NM_001385229:exon4:c.A1404G:p.P468P"	5qF	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.484496416	2	1.00E-09	TTG	synonymous	NA	NA	NA	NA
PW1829T6	chr5	113263254	PW1829tail	autochthonous	sgMsh2 aCD4/8	113263254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	44	16	5	0.3125	exonic	Sgsm1	nonsynonymous SNV	"Sgsm1:NM_001309526:exon10:c.T1744C:p.Y582H,Sgsm1:NM_001309528:exon10:c.T1744C:p.Y582H,Sgsm1:NM_001162965:exon19:c.T2605C:p.Y869H,Sgsm1:NM_172718:exon19:c.T2605C:p.Y869H"	5qF	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	2	1	1	0.9949453	TAG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr5	122644144	PW1829tail	autochthonous	sgMsh2 aCD4/8	122644144	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	117	5	0	0	exonic	P2rx7	nonsynonymous SNV	"P2rx7:NM_001038839:exon1:c.C71A:p.T24K,P2rx7:NM_001038845:exon1:c.C71A:p.T24K,P2rx7:NM_001038887:exon1:c.C71A:p.T24K,P2rx7:NM_011027:exon1:c.C71A:p.T24K"	5qF	chr5-3582301-150478141	4	2	2	0.838	3.980470555	NA	1	0.180498665	3	0.9999668	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr6	23323292	PW1829tail	autochthonous	sgMsh2 aCD4/8	23323292	G	A	SNV	Mutect2;Vardict	2	0.029	394	29	1	0.034482759	exonic	Cadps2	nonsynonymous SNV	"Cadps2:NM_001252110:exon20:c.C3026T:p.A1009V,Cadps2:NM_001252106:exon21:c.C2855T:p.A952V,Cadps2:NM_001252105:exon22:c.C3056T:p.A1019V,Cadps2:NM_153163:exon23:c.C3176T:p.A1059V"	6qA3.1	chr6-3494310-113068119	4	3	1	0.838	3.980470555	NA	1	0.137748981	3	1	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr6	57389790	PW1829tail	autochthonous	sgMsh2 aCD4/8	57389790	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.021	357	0	0	NA	exonic	Vmn1r18	nonsynonymous SNV	Vmn1r18:NM_134181:exon1:c.G778A:p.V260I	6qB3	chr6-3494310-113068119	4	3	1	0.838	3.980470555	NA	1	0.099749262	3	1	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr6	121022394	PW1829tail	autochthonous	sgMsh2 aCD4/8	121022394	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.053	636	6	0	0	exonic	Mical3	nonsynonymous SNV	"Mical3:NM_001270475:exon14:c.G1994A:p.R665H,Mical3:NM_153396:exon14:c.G1994A:p.R665H"	6qF1	chr6-113104747-145247059	7	5	2	0.838	3.980470555	NA	1	0.251748138	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr6	122932211	PW1829tail	autochthonous	sgMsh2 aCD4/8	122932211	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	308	0	0	NA	exonic	Clec4a1	synonymous SNV	Clec4a1:NM_199311:exon5:c.G537A:p.K179K	6qF2	chr6-113104747-145247059	7	5	2	0.838	3.980470555	NA	1	0.308747716	3	0.9887817	AGG	synonymous	NA	NA	NA	NA
PW1829T6	chr6	125144549	PW1829tail	autochthonous	sgMsh2 aCD4/8	125144549	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	114	64	9	0.140625	exonic	Nop2	nonsynonymous SNV	Nop2:NM_138747:exon16:c.C2293T:p.P765S	6qF2	chr6-113104747-145247059	7	5	2	0.838	3.980470555	NA	1	0.498746311	2	0.9999777	CCC	nonsynonymous	C	5	CCCCC	NA
PW1829T6	chr7	23660434	PW1829tail	autochthonous	sgMsh2 aCD4/8	23660434	T	C	SNV	Mutect2;MuSe;Vardict	3	0.082	233	0	0	NA	exonic	Vmn1r172	nonsynonymous SNV	"Vmn1r172:NM_001362150:exon2:c.T743C:p.V248A,Vmn1r172:NM_030735:exon2:c.T743C:p.V248A"	7qA3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.389497119	2	0.9993889	GTA	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr7	44251442	PW1829tail	autochthonous	sgMsh2 aCD4/8	44251442	A	C	SNV	Mutect2;Vardict	2	0.079	65	43	4	0.093023256	exonic	2410002F23Rik	nonsynonymous SNV	2410002F23Rik:NM_025880:exon6:c.A770C:p.N257T	7qB3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.375247224	2	0.8214811	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr7	64373186	PW1829tail	autochthonous	sgMsh2 aCD4/8	64373186	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	255	16	2	0.125	exonic	Fan1	synonymous SNV	Fan1:NM_177893:exon2:c.A318G:p.S106S	7qC	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.489246381	2	1.14E-09	GTG	synonymous	TGG	8	TGGTGGTG	NA
PW1829T6	chr7	87338993	PW1829tail	autochthonous	sgMsh2 aCD4/8	87338993	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	86	6	0	0	exonic	Nox4	nonsynonymous SNV	"Nox4:NM_001285835:exon12:c.T889C:p.F297L,Nox4:NM_015760:exon12:c.T1111C:p.F371L,Nox4:NM_001285833:exon14:c.T1006C:p.F336L"	7qD3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.246998173	3	0.9866499	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr7	108880633	PW1829tail	autochthonous	sgMsh2 aCD4/8	108880633	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	305	0	0	NA	exonic	Olfr518	stopgain	Olfr518:NM_146306:exon1:c.G972A:p.W324X	7qE3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.208998454	3	1.31E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr7	131116879	PW1829tail	autochthonous	sgMsh2 aCD4/8	131116879	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	223	10	1	0.1	exonic	Dmbt1	synonymous SNV	"Dmbt1:NM_007769:exon45:c.C5295T:p.A1765A,Dmbt1:NM_001347632:exon46:c.C5328T:p.A1776A"	7qF3	chr7-4743149-143062472	4	2	2	0.838	3.980470555	NA	1	0.588995643	2	0.9999999	CCG	synonymous	NA	NA	NA	NA
PW1829T6	chr8	22065130	PW1829tail	autochthonous	sgMsh2 aCD4/8	22065130	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	205	30	12	0.4	exonic	Alg11	nonsynonymous SNV	"Alg11:NM_001243161:exon3:c.C406T:p.R136C,Alg11:NM_183142:exon3:c.C280T:p.R94C"	8qA2	chr8-3154030-126970168	4	2	2	0.838	3.980470555	NA	1	1	1	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chr8	31124880	PW1829tail	autochthonous	sgMsh2 aCD4/8	31124880	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	189	9	1	0.111111111	exonic	Rnf122	stopgain	"Rnf122:NM_001368373:exon3:c.C241T:p.R81X,Rnf122:NM_001368374:exon3:c.C241T:p.R81X,Rnf122:NM_001368375:exon3:c.C211T:p.R71X,Rnf122:NM_175136:exon3:c.C211T:p.R71X"	8qA3	chr8-3154030-126970168	4	2	2	0.838	3.980470555	NA	1	0.294497821	3	0.9865675	GCG	nonsynonymous	GAGC	10	GAGCGAGCGA	NA
PW1829T6	chr9	111389196	PW1829tail	autochthonous	sgMsh2 aCD4/8	111389196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	101	0	0	NA	exonic	Trank1	synonymous SNV	Trank1:NM_001164659:exon19:c.C5643T:p.C1881C	9qF3	chr9-13804899-124127352	4	2	2	0.838	3.980470555	NA	2	1	1	0.9999978	GCT	synonymous	NA	NA	NA	NA
PW1829T6	chrX	49497822	PW1829tail	autochthonous	sgMsh2 aCD4/8	49497822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.27	94	0	0	NA	exonic	Arhgap36	nonsynonymous SNV	"Arhgap36:NM_001081123:exon10:c.T1331C:p.L444P,Arhgap36:NM_001356394:exon10:c.T1283C:p.L428P"	XqA5	NA	NA	NA	NA	0.838	3.980470555	NA	NA	NA	NA	NA	CTG	nonsynonymous	NA	NA	NA	NA
PW1829T6	chrX	141723726	PW1829tail	autochthonous	sgMsh2 aCD4/8	141723726	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	52	0	0	NA	exonic	Irs4	synonymous SNV	Irs4:NM_010572:exon1:c.C1473T:p.G491G	XqF2	NA	NA	NA	NA	0.838	3.980470555	NA	NA	NA	NA	NA	GGC	synonymous	NA	NA	NA	NA
PW1829T7	chr1	11974957	PW1829tail	autochthonous	sgMsh2 aCD4/8	11974957	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	283	0	0	NA	exonic	A830018L16Rik	synonymous SNV	"A830018L16Rik:NM_001310451:exon13:c.T1323C:p.S441S,A830018L16Rik:NM_001374633:exon13:c.T1332C:p.S444S,A830018L16Rik:NM_001374634:exon13:c.T1113C:p.S371S,A830018L16Rik:NM_001160369:exon14:c.T1380C:p.S460S,A830018L16Rik:NM_177173:exon14:c.T1371C:p.S457S"	1qA2	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.511332038	2	0.9996505	GTG	synonymous	NA	NA	NA	NA
PW1829T7	chr1	24536975	PW1829tail	autochthonous	sgMsh2 aCD4/8	24536975	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	137	0	0	NA	exonic	Col19a1	nonsynonymous SNV	Col19a1:NM_007733:exon5:c.G285T:p.E95D	1qA5	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.589998505	2	0.9997774	CCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr1	46835544	PW1829tail	autochthonous	sgMsh2 aCD4/8	46835544	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	267	68	8	0.117647059	exonic	Slc39a10	nonsynonymous SNV	"Slc39a10:NM_172653:exon2:c.C597A:p.D199E,Slc39a10:NM_001356416:exon3:c.C597A:p.D199E,Slc39a10:NM_001356417:exon3:c.C597A:p.D199E"	1qC1.1	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.707998206	2	0.9993745	AGT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr1	60354583	PW1829tail	autochthonous	sgMsh2 aCD4/8	60354583	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	266	106	4	0.037735849	exonic	Cyp20a1	nonsynonymous SNV	"Cyp20a1:NM_001313721:exon3:c.A53G:p.D18G,Cyp20a1:NM_030013:exon4:c.A359G:p.D120G"	1qC2	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.570331888	2	0.999999	GAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr1	74603220	PW1829tail	autochthonous	sgMsh2 aCD4/8	74603220	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.1	151	2	0	0	exonic	Stk36	frameshift deletion	Stk36:NM_175031:exon3:c.167delG:p.G57Vfs*22	1qC3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.655553894	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW1829T7	chr1	128274909	PW1829tail	autochthonous	sgMsh2 aCD4/8	128274909	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	118	267	21	0.078651685	exonic	Ubxn4	frameshift deletion	"Ubxn4:NM_001356529:exon12:c.1290delT:p.L432Yfs*54,Ubxn4:NM_026390:exon12:c.1287delT:p.L431Yfs*54"	1qE3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.43266557	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr1	130813276	PW1829tail	autochthonous	sgMsh2 aCD4/8	130813276	C	-	Deletion	Strelka2;Vardict	2	0.0694	72	3	0	0	exonic	Fcamr	frameshift deletion	"Fcamr:NM_001170632:exon5:c.1431delC:p.P479Qfs*7,Fcamr:NM_144960:exon5:c.1263delC:p.P423Qfs*7"	1qE4	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.454954403	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1829T7	chr1	152506974	PW1829tail	autochthonous	sgMsh2 aCD4/8	152506974	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	91	0	0	NA	exonic	Colgalt2	nonsynonymous SNV	Colgalt2:NM_177756:exon11:c.C1576T:p.P526S	1qG2	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.55722081	2	0.9909171	GCC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr1	164132309	PW1829tail	autochthonous	sgMsh2 aCD4/8	164132309	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	72	1	0	0	exonic	Selp	nonsynonymous SNV	Selp:NM_011347:exon7:c.C1133T:p.A378V	1qH2.2	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.662109433	2	0.9770567	GCC	nonsynonymous	CAGCCC	14	CAGCCCCAGCCCCA	NA
PW1829T7	chr1	170301329	PW1829tail	autochthonous	sgMsh2 aCD4/8	170301329	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	95	3	1	0.333333333	exonic	Gm7694	nonsynonymous SNV	Gm7694:NM_001198955:exon3:c.G630T:p.K210N	1qH3	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.655553894	2	0.993233	GCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr1	180420266	PW1829tail	autochthonous	sgMsh2 aCD4/8	180420266	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	92	16	0	0	exonic	Itpkb	nonsynonymous SNV	Itpkb:NM_001081175:exon6:c.T2448G:p.D816E	1qH4	chr1-4867294-193194439	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.616220661	2	0.9971698	ATG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr10	58477918	PW1829tail	autochthonous	sgMsh2 aCD4/8	58477918	A	-	Deletion	Mutect2;Vardict	2	0.05	122	71	2	0.028169014	exonic	Ranbp2	frameshift deletion	Ranbp2:NM_011240:exon20:c.4459delA:p.K1488Nfs*21	10qB4	chr10-5832920-130389076	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.327776947	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW1829T7	chr10	88148347	PW1829tail	autochthonous	sgMsh2 aCD4/8	88148347	A	G	SNV	Mutect2;Vardict	2	0.023	282	30	0	0	exonic	Nup37	nonsynonymous SNV	"Nup37:NM_027191:exon2:c.A124G:p.N42D,Nup37:NM_028334:exon2:c.A124G:p.N42D"	10qC1	chr10-5832920-130389076	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.150777396	3	1.00E-09	TAA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr10	123113673	PW1829tail	autochthonous	sgMsh2 aCD4/8	123113673	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.148	54	75	16	0.213333333	exonic	Usp15	stopgain	"Usp15:NM_001301628:exon21:c.2691delC:p.Y897fs*0,Usp15:NM_027604:exon22:c.2778delC:p.Y926fs*0"	10qD2	chr10-5832920-130389076	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.970219764	NA	NA	CGT	nonsynonymous	NA	NA	NA	-1
PW1829T7	chr10	126013256	PW1829tail	autochthonous	sgMsh2 aCD4/8	126013256	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.231	114	0	0	NA	exonic	Lrig3	synonymous SNV	Lrig3:NM_177152:exon18:c.C2844T:p.C948C	10qD3	chr10-5832920-130389076	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9999066	GCA	synonymous	NA	NA	NA	NA
PW1829T7	chr11	23403680	PW1829tail	autochthonous	sgMsh2 aCD4/8	23403680	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	119	34	4	0.117647059	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon31:c.A4486G:p.T1496A	11qA3.2	chr11-3133205-69579350	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.412998953	3	0.7237028	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr11	53436667	PW1829tail	autochthonous	sgMsh2 aCD4/8	53436667	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	120	0	0	NA	exonic	Gdf9	nonsynonymous SNV	Gdf9:NM_008110:exon2:c.T449G:p.M150R	11qB1.3	chr11-3133205-69579350	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	1	0.9999448	ATG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr11	76407277	PW1829tail	autochthonous	sgMsh2 aCD4/8	76407277	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	76	35	6	0.171428571	exonic	Timm22	nonsynonymous SNV	"Timm22:NM_019818:exon1:c.T73C:p.Y25H,Timm22:NM_023355:exon1:c.T73C:p.Y25H"	11qB5	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9973844	GTA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr11	98657660	PW1829tail	autochthonous	sgMsh2 aCD4/8	98657660	G	T	SNV	Mutect2;Vardict	2	0.055	78	0	0	NA	exonic	Gsdma2	nonsynonymous SNV	"Gsdma2:NM_001363221:exon9:c.G736T:p.G246W,Gsdma2:NM_001363220:exon10:c.G1237T:p.G413W,Gsdma2:NM_029727:exon11:c.G1237T:p.G413W"	11qD	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.360554642	3	0.884701	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr11	103199793	PW1829tail	autochthonous	sgMsh2 aCD4/8	103199793	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.178	29	0	0	NA	exonic	Efcab15	nonsynonymous SNV	Efcab15:NM_001254724:exon8:c.G692A:p.R231Q	11qE1	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.8603437	CCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr11	110127392	PW1829tail	autochthonous	sgMsh2 aCD4/8	110127392	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	216	0	0	NA	exonic	Abca9	frameshift deletion	Abca9:NM_147220:exon25:c.3401delA:p.N1134Ifs*9	11qE1	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.393332337	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr11	113903085	PW1829tail	autochthonous	sgMsh2 aCD4/8	113903085	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	47	0	0	NA	exonic	Sdk2	nonsynonymous SNV	Sdk2:NM_172800:exon3:c.C292T:p.R98C	11qE2	chr11-69590981-121956809	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	3	1	1	0.9676603	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr12	21346045	PW1829tail	autochthonous	sgMsh2 aCD4/8	21346045	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.082	79	0	0	NA	exonic	Adam17	nonsynonymous SNV	Adam17:NM_001277266:exon7:c.T782C:p.V261A	12qA1.3	chr12-3235806-119465464	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	2	0.9721047	CAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr12	38856997	PW1829tail	autochthonous	sgMsh2 aCD4/8	38856997	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	189	7	0	0	exonic	Etv1	stopgain	"Etv1:NM_001163154:exon8:c.G877T:p.G293X,Etv1:NM_001347379:exon10:c.G943T:p.G315X,Etv1:NM_007960:exon11:c.G997T:p.G333X"	12qA3	chr12-3235806-119465464	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.760442518	2	0.8332825	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr12	69818023	PW1829tail	autochthonous	sgMsh2 aCD4/8	69818023	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	240	70	6	0.085714286	exonic	Map4k5	nonsynonymous SNV	Map4k5:NM_201519:exon24:c.A1884G:p.I628M	12qC2	chr12-3235806-119465464	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.485109882	2	0.9868645	CTA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr13	11659004	PW1829tail	autochthonous	sgMsh2 aCD4/8	11659004	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	215	0	0	NA	exonic	Ryr2	synonymous SNV	Ryr2:NM_023868:exon70:c.A10173G:p.A3391A	13qA1	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.576887427	2	0.9999931	CTG	synonymous	NA	NA	NA	NA
PW1829T7	chr13	19729390	PW1829tail	autochthonous	sgMsh2 aCD4/8	19729390	A	-	Deletion	Strelka2;Vardict	2	0.2273	110	0	0	NA	exonic	Gpr141b	frameshift deletion	Gpr141b:NM_175688:exon2:c.491delT:p.L164Yfs*29	13qA2	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW1829T7	chr13	46769211	PW1829tail	autochthonous	sgMsh2 aCD4/8	46769211	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	71	18	3	0.166666667	exonic	Kif13a	synonymous SNV	Kif13a:NM_010617:exon33:c.G4074A:p.A1358A	13qA5	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.753886979	2	0.7750632	GCG	synonymous	NA	NA	NA	NA
PW1829T7	chr13	50469408	PW1829tail	autochthonous	sgMsh2 aCD4/8	50469408	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.243	43	0	0	NA	exonic	Nutm2	frameshift deletion	Nutm2:NM_001033400:exon2:c.140delC:p.Q49Sfs*14	13qA5	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1829T7	chr13	98636777	PW1829tail	autochthonous	sgMsh2 aCD4/8	98636777	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	84	0	0	NA	exonic	Tmem174	nonsynonymous SNV	Tmem174:NM_026685:exon1:c.T544C:p.Y182H	13qD1	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.963664225	1	0.9957982	TAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr13	117264412	PW1829tail	autochthonous	sgMsh2 aCD4/8	117264412	A	-	Deletion	Strelka2;Vardict	2	0.1152	217	157	1	0.006369427	exonic	Emb	frameshift deletion	Emb:NM_010330:exon5:c.496delA:p.K168Sfs*2	13qD2.3	chr13-4065516-119495179	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.755198086	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW1829T7	chr14	16818776	PW1829tail	autochthonous	sgMsh2 aCD4/8	16818776	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.077	81	0	0	NA	exonic	Rarb	frameshift deletion	"Rarb:NM_001289760:exon2:c.92delC:p.P31Lfs*53,Rarb:NM_001289761:exon2:c.92delC:p.P31Lfs*89"	14qA2	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.504776499	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr14	26429796	PW1829tail	autochthonous	sgMsh2 aCD4/8	26429796	T	A	SNV	Mutect2;Vardict	2	0.073	55	87	4	0.045977011	exonic	Slmap	nonsynonymous SNV	"Slmap:NM_001347494:exon14:c.A1451T:p.E484V,Slmap:NM_032008:exon16:c.A1553T:p.E518V,Slmap:NM_001310445:exon17:c.A1616T:p.E539V"	14qA3	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.478554343	2	0.7995147	TTC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr14	30931206	PW1829tail	autochthonous	sgMsh2 aCD4/8	30931206	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.331	15	2	0	0	exonic	Itih1	nonsynonymous SNV	"Itih1:NM_001306078:exon19:c.G2276T:p.G759V,Itih1:NM_008406:exon19:c.G2264T:p.G755V"	14qB	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	1	0.6394325	CCC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr14	31263518	PW1829tail	autochthonous	sgMsh2 aCD4/8	31263518	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	76	2	0	0	exonic	Dnah1	synonymous SNV	Dnah1:NM_001033668:exon72:c.T11415A:p.S3805S	14qB	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.530998654	2	0.9624649	GAG	synonymous	NA	NA	NA	NA
PW1829T7	chr14	50237990	PW1829tail	autochthonous	sgMsh2 aCD4/8	50237990	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	171	0	0	NA	exonic	Olfr731	synonymous SNV	Olfr731:NM_146363:exon1:c.G894A:p.V298V	14qC1	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.485109882	2	0.9637294	TCA	synonymous	TTC	9	TTCTTCTTC	NA
PW1829T7	chr14	50393567	PW1829tail	autochthonous	sgMsh2 aCD4/8	50393567	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	162	0	0	NA	exonic	Olfr736	nonsynonymous SNV	Olfr736:NM_146666:exon1:c.A810C:p.Q270H	14qC1	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.419554492	3	0.7571387	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr14	50654115	PW1829tail	autochthonous	sgMsh2 aCD4/8	50654115	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	265	0	0	NA	exonic	Olfr746	nonsynonymous SNV	Olfr746:NM_146298:exon1:c.C877T:p.R293C	14qC1	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	1.16E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr14	55114046	PW1829tail	autochthonous	sgMsh2 aCD4/8	55114046	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.401	19	0	0	NA	exonic	Jph4	frameshift deletion	Jph4:NM_177049:exon3:c.512delC:p.P171Rfs*77	14qC3	chr14-3072210-57276279	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	3	1	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr15	25801174	PW1829tail	autochthonous	sgMsh2 aCD4/8	25801174	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	155	64	1	0.015625	exonic	Myo10	nonsynonymous SNV	"Myo10:NM_001353142:exon13:c.C2210T:p.T737M,Myo10:NM_001353141:exon15:c.C2522T:p.T841M,Myo10:NM_019472:exon33:c.C4448T:p.T1483M"	15qB1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.334332486	3	0.9983123	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr15	71463578	PW1829tail	autochthonous	sgMsh2 aCD4/8	71463578	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	213	0	0	NA	exonic	Fam135b	nonsynonymous SNV	Fam135b:NM_177819:exon13:c.C1766A:p.T589N	15qD3	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.406443415	3	0.9449259	AGT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr15	80212230	PW1829tail	autochthonous	sgMsh2 aCD4/8	80212230	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.079	64	42	4	0.095238095	exonic	Mgat3	synonymous SNV	Mgat3:NM_010795:exon2:c.G1257A:p.A419A	15qE1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.517887577	2	0.9243249	CGG	synonymous	NA	NA	NA	NA
PW1829T7	chr15	81008370	PW1829tail	autochthonous	sgMsh2 aCD4/8	81008370	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	43	45	1	0.022222222	exonic	Sgsm3	nonsynonymous SNV	"Sgsm3:NM_001357669:exon9:c.A896G:p.D299G,Sgsm3:NM_134091:exon9:c.A896G:p.D299G"	15qE1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.937442069	1	0.8817957	GAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr15	89378383	PW1829tail	autochthonous	sgMsh2 aCD4/8	89378383	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.074	89	4	0	0	exonic	Odf3b	nonsynonymous SNV	Odf3b:NM_001013022:exon3:c.A370G:p.T124A	15qE3	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.485109882	2	0.8853774	GTA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr15	97008988	PW1829tail	autochthonous	sgMsh2 aCD4/8	97008988	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	139	31	5	0.161290323	exonic	Slc38a4	nonsynonymous SNV	"Slc38a4:NM_001358058:exon10:c.G868A:p.A290T,Slc38a4:NM_001358059:exon10:c.G868A:p.A290T,Slc38a4:NM_001358060:exon10:c.G868A:p.A290T,Slc38a4:NM_027052:exon10:c.G868A:p.A290T"	15qF1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.367110181	3	0.9784258	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr15	98378349	PW1829tail	autochthonous	sgMsh2 aCD4/8	98378349	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	135	0	0	NA	exonic	Olfr283	synonymous SNV	Olfr283:NM_147036:exon1:c.T760C:p.L254L	15qF1	chr15-3327923-103439122	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.504776499	2	0.9782851	AAC	synonymous	NA	NA	NA	NA
PW1829T7	chr16	32186570	PW1829tail	autochthonous	sgMsh2 aCD4/8	32186572	TGA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.074	184	0	0	NA	exonic	Bex6	nonframeshift deletion	Bex6:NM_001033539:exon3:c.195_197del:p.D66del	16qB2	chr16-3746585-97850976	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.485109882	NA	NA	TTG	inframe	NA	NA	NA	-3
PW1829T7	chr16	43908599	PW1829tail	autochthonous	sgMsh2 aCD4/8	43908599	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	77	10	0	0	exonic	Ccdc191	nonsynonymous SNV	Ccdc191:NM_027801:exon5:c.T695G:p.L232R	16qB4	chr16-3746585-97850976	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.852220063	1	0.8376526	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr16	91034164	PW1829tail	autochthonous	sgMsh2 aCD4/8	91034164	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	161	42	1	0.023809524	exonic	Paxbp1	nonsynonymous SNV	Paxbp1:NM_026110:exon7:c.A1323C:p.E441D	16qC3.3	chr16-3746585-97850976	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.353999103	3	0.9954158	GTT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr16	96644056	PW1829tail	autochthonous	sgMsh2 aCD4/8	96644056	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	130	0	0	NA	exonic	Dscam	synonymous SNV	Dscam:NM_031174:exon26:c.C4434T:p.S1478S	16qC4	chr16-3746585-97850976	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.412998953	3	0.7534273	TGG	synonymous	NA	NA	NA	NA
PW1829T7	chr17	20955928	PW1829tail	autochthonous	sgMsh2 aCD4/8	20955928	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.337	86	156	5	0.032051282	exonic	Ppp2r1a	frameshift deletion	Ppp2r1a:NM_016891:exon4:c.411delT:p.G138Efs*24	17qA3.2	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	GTG	frameshift	NA	NA	NA	-1
PW1829T7	chr17	27434949	PW1829tail	autochthonous	sgMsh2 aCD4/8	27434949	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	57	0	0	NA	exonic	Grm4	nonsynonymous SNV	"Grm4:NM_001013385:exon8:c.C2026A:p.R676S,Grm4:NM_001360192:exon8:c.C1402A:p.R468S,Grm4:NM_001379317:exon8:c.C1402A:p.R468S,Grm4:NM_001291045:exon9:c.C2026A:p.R676S"	17qA3.3	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.563776349	2	0.9621973	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr17	28608706	PW1829tail	autochthonous	sgMsh2 aCD4/8	28608706	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	56	75	7	0.093333333	exonic	Srpk1	nonsynonymous SNV	Srpk1:NM_016795:exon3:c.G133C:p.E45Q	17qA3.3	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.734220362	2	0.8250127	TCC	nonsynonymous	CTC	11	CTCCTCCTCCT	NA
PW1829T7	chr17	31108416	PW1829tail	autochthonous	sgMsh2 aCD4/8	31108416	G	A	SNV	Mutect2;Vardict	2	0.057	73	22	0	0	exonic	Abcg1	nonsynonymous SNV	Abcg1:NM_009593:exon9:c.G1084A:p.D362N	17qA3.3	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.37366572	3	0.8139872	CGA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr17	57066757	PW1829tail	autochthonous	sgMsh2 aCD4/8	57066757	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	75	4	0	0	exonic	Dennd1c	nonsynonymous SNV	"Dennd1c:NM_001384111:exon21:c.C1667T:p.A556V,Dennd1c:NM_001384107:exon22:c.C1790T:p.A597V,Dennd1c:NM_001384108:exon22:c.C1787T:p.A596V,Dennd1c:NM_001384109:exon22:c.C1784T:p.A595V,Dennd1c:NM_001384110:exon22:c.C1772T:p.A591V,Dennd1c:NM_153551:exon23:c.C1805T:p.A602V"	17qD	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9971451	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr17	58883981	PW1829tail	autochthonous	sgMsh2 aCD4/8	58883981	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.075	118	0	0	NA	exonic	Pdzph1	synonymous SNV	Pdzph1:NM_027001:exon11:c.G3405C:p.V1135V	17qD	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.491665421	2	0.9423094	ACA	synonymous	NA	NA	NA	NA
PW1829T7	chr17	71082269	PW1829tail	autochthonous	sgMsh2 aCD4/8	71082269	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.091	67	2	0	0	exonic	Myom1	frameshift deletion	Myom1:NM_010867:exon18:c.2513delG:p.G840Afs*1	17qE1.3	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.596554044	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr17	74585954	PW1829tail	autochthonous	sgMsh2 aCD4/8	74585954	T	C	SNV	Mutect2;Vardict	2	0.058	73	4	0	0	exonic	Birc6	synonymous SNV	Birc6:NM_007566:exon10:c.T2886C:p.G962G	17qE2	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.380221259	3	0.782995	GTG	synonymous	NA	NA	NA	NA
PW1829T7	chr17	74642612	PW1829tail	autochthonous	sgMsh2 aCD4/8	74642612	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.031	180	19	0	0	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon48:c.A9467G:p.D3156G	17qE2	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.203221707	3	4.08E-08	GAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr17	83738404	PW1829tail	autochthonous	sgMsh2 aCD4/8	83738404	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	68	116	8	0.068965517	exonic	Mta3	nonsynonymous SNV	"Mta3:NM_001171052:exon4:c.G266T:p.R89M,Mta3:NM_001171053:exon4:c.G266T:p.R89M,Mta3:NM_001171054:exon4:c.G266T:p.R89M,Mta3:NM_001379388:exon4:c.G266T:p.R89M,Mta3:NM_001379389:exon4:c.G266T:p.R89M,Mta3:NM_001379390:exon4:c.G266T:p.R89M,Mta3:NM_001379391:exon4:c.G266T:p.R89M,Mta3:NM_001379392:exon4:c.G266T:p.R89M,Mta3:NM_054082:exon4:c.G266T:p.R89M"	17qE4	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.701442667	2	0.9299227	AGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr17	87718638	PW1829tail	autochthonous	sgMsh2 aCD4/8	87718638	-	A	Insertion	Strelka2;Vardict	2	0.6	60	11	0	0	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3077700-90208269	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	AGA	frameshift	NA	NA	NA	1
PW1829T7	chr18	4181974	PW1829tail	autochthonous	sgMsh2 aCD4/8	4181974	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	201	0	0	NA	exonic	Lyzl1	stoploss	Lyzl1:NM_026092:exon5:c.A447G:p.X149W	18qA1	chr18-3281580-89104078	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.609665122	2	0.9999974	GAT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr18	43329751	PW1829tail	autochthonous	sgMsh2 aCD4/8	43329751	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	72	13	2	0.153846154	exonic	Dpysl3	synonymous SNV	"Dpysl3:NM_001136086:exon11:c.C1215T:p.S405S,Dpysl3:NM_001291455:exon11:c.C1560T:p.S520S,Dpysl3:NM_009468:exon11:c.C1221T:p.S407S"	18qB3	chr18-3281580-89104078	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9962885	CGC	synonymous	NA	NA	NA	NA
PW1829T7	chr18	44276031	PW1829tail	autochthonous	sgMsh2 aCD4/8	44276031	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	293	0	0	NA	exonic	Npy6r	nonsynonymous SNV	Npy6r:NM_010935:exon2:c.A518G:p.Y173C	18qB3	chr18-3281580-89104078	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.170444013	3	1.00E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr18	59024568	PW1829tail	autochthonous	sgMsh2 aCD4/8	59024568	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	133	0	0	NA	exonic	Adamts19	synonymous SNV	Adamts19:NM_175506:exon19:c.A2931G:p.Q977Q	18qD3	chr18-3281580-89104078	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.412998953	3	0.7611501	AAC	synonymous	NA	NA	NA	NA
PW1829T7	chr18	68408220	PW1829tail	autochthonous	sgMsh2 aCD4/8	68408220	T	-	Deletion	Mutect2;Vardict	2	0.047	182	0	0	NA	exonic	Mc2r	stopgain	"Mc2r:NM_001271717:exon3:c.1delA:p.M1fs*0,Mc2r:NM_008560:exon3:c.1delA:p.M1fs*0,Mc2r:NM_001271716:exon4:c.1delA:p.M1fs*0,Mc2r:NM_001301372:exon5:c.1delA:p.M1fs*0"	18qE2	chr18-3281580-89104078	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.30811033	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
PW1829T7	chr19	6999710	PW1829tail	autochthonous	sgMsh2 aCD4/8	6999710	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	78	21	0	0	exonic	Fermt3	nonsynonymous SNV	"Fermt3:NM_001362399:exon14:c.G1747A:p.V583M,Fermt3:NM_153795:exon14:c.G1747A:p.V583M"	19qA	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.766998056	2	0.7095417	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr19	12298734	PW1829tail	autochthonous	sgMsh2 aCD4/8	12298734	G	A	SNV	Mutect2;MuSe;Vardict	3	0.055	582	0	0	NA	exonic	Olfr1436	nonsynonymous SNV	Olfr1436:NM_146687:exon1:c.C397T:p.P133S	19qA	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.360554642	3	3.64E-09	GGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr19	12422841	PW1829tail	autochthonous	sgMsh2 aCD4/8	12422841	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	226	0	0	NA	exonic	Olfr1441	frameshift deletion	Olfr1441:NM_146683:exon1:c.531delT:p.F179Sfs*6	19qA	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr19	20617940	PW1829tail	autochthonous	sgMsh2 aCD4/8	20617940	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	172	88	9	0.102272727	exonic	Aldh1a1	nonsynonymous SNV	"Aldh1a1:NM_013467:exon3:c.C232T:p.R78C,Aldh1a1:NM_001361504:exon6:c.C232T:p.R78C,Aldh1a1:NM_001361506:exon6:c.C232T:p.R78C,Aldh1a1:NM_001361503:exon7:c.C232T:p.R78C,Aldh1a1:NM_001361505:exon7:c.C232T:p.R78C"	19qB	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9999994	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr19	29810302	PW1829tail	autochthonous	sgMsh2 aCD4/8	29810302	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	232	14	0	0	exonic	Ranbp6	synonymous SNV	Ranbp6:NM_177721:exon1:c.T2649C:p.S883S	19qC1	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.360554642	3	0.9994193	TAC	synonymous	NA	NA	NA	NA
PW1829T7	chr19	37977693	PW1829tail	autochthonous	sgMsh2 aCD4/8	37977693	T	-	Deletion	Strelka2;Vardict	2	0.1104	154	144	3	0.020833333	exonic	Myof	frameshift deletion	"Myof:NM_001099634:exon13:c.1178delA:p.N393Ifs*6,Myof:NM_001302140:exon13:c.1178delA:p.N393Ifs*6"	19qC2	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.723731499	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW1829T7	chr19	42731426	PW1829tail	autochthonous	sgMsh2 aCD4/8	42731426	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	66	22	0	0	exonic	Pyroxd2	nonsynonymous SNV	Pyroxd2:NM_029011:exon13:c.C1340T:p.A447V	19qC3	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.596554044	2	0.9853107	AGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr19	45027738	PW1829tail	autochthonous	sgMsh2 aCD4/8	45027738	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	92	2	0	0	exonic	Pdzd7	frameshift deletion	Pdzd7:NM_001195265:exon16:c.2943delT:p.L982Sfs*19	19qC3	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.439221109	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW1829T7	chr19	53640964	PW1829tail	autochthonous	sgMsh2 aCD4/8	53640964	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.104	87	126	3	0.023809524	exonic	Smc3	frameshift deletion	Smc3:NM_007790:exon24:c.2847delC:p.Q951Rfs*9	19qD2	chr19-3628599-60987573	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.68177605	NA	NA	TCC	frameshift	TCCC	8	TCCCTCCC	-1
PW1829T7	chr2	14266354	PW1829tail	autochthonous	sgMsh2 aCD4/8	14266354	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.099	44	30	0	0	exonic	Mrc1	synonymous SNV	Mrc1:NM_008625:exon7:c.C1068T:p.S356S	2qA2	chr2-4925576-25055337	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.648998355	2	0.9316905	GCG	synonymous	NA	NA	NA	NA
PW1829T7	chr2	25243987	PW1829tail	autochthonous	sgMsh2 aCD4/8	25243987	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	67	2	0	0	exonic	Rnf208	frameshift deletion	Rnf208:NM_176834:exon1:c.692delG:p.G233Vfs*59	2qA3	chr2-25055338-34176218	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.616220661	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr2	29902232	PW1829tail	autochthonous	sgMsh2 aCD4/8	29902232	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.067	76	60	3	0.05	exonic	Odf2	nonsynonymous SNV	"Odf2:NM_001177661:exon5:c.A604G:p.R202G,Odf2:NM_001374179:exon5:c.A331G:p.R111G,Odf2:NM_001113213:exon6:c.A457G:p.R153G,Odf2:NM_001113214:exon6:c.A457G:p.R153G,Odf2:NM_001177659:exon6:c.A457G:p.R153G,Odf2:NM_001355137:exon6:c.A457G:p.R153G,Odf2:NM_001355138:exon6:c.A400G:p.R134G,Odf2:NM_001369060:exon6:c.A472G:p.R158G,Odf2:NM_001374180:exon6:c.A457G:p.R153G,Odf2:NM_001374181:exon6:c.A400G:p.R134G,Odf2:NM_001374182:exon6:c.A400G:p.R134G,Odf2:NM_013615:exon6:c.A415G:p.R139G,Odf2:NM_001355136:exon7:c.A457G:p.R153G"	2qB	chr2-25055338-34176218	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.439221109	2	0.6089108	GAG	nonsynonymous	GAGGA	10	GAGGAGAGGA	NA
PW1829T7	chr2	31413312	PW1829tail	autochthonous	sgMsh2 aCD4/8	31413312	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	64	0	0	NA	exonic	Hmcn2	synonymous SNV	Hmcn2:NM_001370902:exon58:c.T8874C:p.S2958S	2qB	chr2-25055338-34176218	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.884997757	1	0.8860134	GTG	synonymous	NA	NA	NA	NA
PW1829T7	chr2	35321547	PW1829tail	autochthonous	sgMsh2 aCD4/8	35321547	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	180	266	3	0.011278195	exonic	Stom	nonsynonymous SNV	Stom:NM_013515:exon5:c.C461T:p.A154V	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.190110629	3	1.64E-08	CGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	36640346	PW1829tail	autochthonous	sgMsh2 aCD4/8	36640346	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.238	364	0	0	NA	exonic	Olfr345	frameshift deletion	Olfr345:NM_146945:exon1:c.306delT:p.F104Lfs*32	2qB	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr2	59815382	PW1829tail	autochthonous	sgMsh2 aCD4/8	59815382	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	112	11	1	0.090909091	exonic	Tanc1	frameshift deletion	"Tanc1:NM_001290659:exon16:c.2777delC:p.I928Sfs*30,Tanc1:NM_198294:exon17:c.2798delC:p.I935Sfs*30"	2qC1.1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW1829T7	chr2	86423023	PW1829tail	autochthonous	sgMsh2 aCD4/8	86423023	A	G	SNV	Mutect2;MuSe;Vardict	3	0.065	292	0	0	NA	exonic	Olfr1062	nonsynonymous SNV	Olfr1062:NM_147078:exon1:c.T652C:p.Y218H	2qD	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.426110031	3	0.8632627	TAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	88852416	PW1829tail	autochthonous	sgMsh2 aCD4/8	88852416	T	C	SNV	Mutect2;MuSe;Vardict	3	0.085	397	0	0	NA	exonic	Olfr1204	synonymous SNV	Olfr1204:NM_146463:exon1:c.T465C:p.G155G	2qE1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.55722081	2	1.32E-08	GTA	synonymous	NA	NA	NA	NA
PW1829T7	chr2	88852535	PW1829tail	autochthonous	sgMsh2 aCD4/8	88852535	T	-	Deletion	Mutect2;Vardict	2	0.03	360	0	0	NA	exonic	Olfr1204	frameshift deletion	Olfr1204:NM_146463:exon1:c.584delT:p.F196Lfs*11	2qE1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.196666168	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T7	chr2	91485886	PW1829tail	autochthonous	sgMsh2 aCD4/8	91485886	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	76	0	0	NA	exonic	Lrp4	nonsynonymous SNV	Lrp4:NM_172668:exon17:c.G2348T:p.R783L	2qE1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.819442368	1	0.656773	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	102761127	PW1829tail	autochthonous	sgMsh2 aCD4/8	102761127	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	93	8	0	0	exonic	Slc1a2	nonsynonymous SNV	"Slc1a2:NM_001077514:exon8:c.G1201T:p.A401S,Slc1a2:NM_001077515:exon8:c.G1192T:p.A398S,Slc1a2:NM_001361018:exon8:c.G1201T:p.A401S,Slc1a2:NM_011393:exon8:c.G1192T:p.A398S"	2qE2	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.439221109	2	0.594927	AGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	115670013	PW1829tail	autochthonous	sgMsh2 aCD4/8	115670013	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	104	2	0	0	exonic	BC052040	nonsynonymous SNV	"BC052040:NM_001145898:exon7:c.T431C:p.I144T,BC052040:NM_207264:exon7:c.T431C:p.I144T"	2qE4	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.570331888	2	0.996966	ATC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	119139420	PW1829tail	autochthonous	sgMsh2 aCD4/8	119139420	T	-	Deletion	Strelka2;Vardict	2	0.1046	153	40	3	0.075	exonic	Rmdn3	frameshift deletion	Rmdn3:NM_001033136:exon10:c.1159delA:p.T387Rfs*45	2qE5	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.685709374	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
PW1829T7	chr2	120019571	PW1829tail	autochthonous	sgMsh2 aCD4/8	120019571	C	-	Deletion	Mutect2;Vardict	2	0.056	105	6	0	0	exonic	Mapkbp1	frameshift deletion	"Mapkbp1:NM_011941:exon20:c.2314delC:p.P773Lfs*37,Mapkbp1:NM_001355293:exon21:c.2332delC:p.P779Lfs*37"	2qE5	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.367110181	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW1829T7	chr2	125988972	PW1829tail	autochthonous	sgMsh2 aCD4/8	125988972	A	-	Deletion	Mutect2;Vardict	2	0.062	226	0	0	NA	exonic	Fam227b	frameshift deletion	Fam227b:NM_029455:exon14:c.1311delT:p.F437Lfs*3	2qF1	chr2-34176466-150118344	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.406443415	NA	NA	TAA	frameshift	NA	NA	NA	-1
PW1829T7	chr2	160967898	PW1829tail	autochthonous	sgMsh2 aCD4/8	160967898	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	171	10	0	0	exonic	Chd6	nonsynonymous SNV	Chd6:NM_173368:exon30:c.G4442A:p.R1481H	2qH2	chr2-150119227-181573140	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.629331739	2	0.9999601	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	164045894	PW1829tail	autochthonous	sgMsh2 aCD4/8	164045894	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	136	2	0	0	exonic	Pabpc1l	synonymous SNV	Pabpc1l:NM_001114079:exon11:c.T1461C:p.G487G	2qH3	chr2-150119227-181573140	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	2	0.9964146	GTG	synonymous	NA	NA	NA	NA
PW1829T7	chr2	164317562	PW1829tail	autochthonous	sgMsh2 aCD4/8	164317562	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	186	0	0	NA	exonic	Svs6	nonsynonymous SNV	Svs6:NM_013679:exon3:c.C244T:p.R82W	2qH3	chr2-150119227-181573140	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.49822096	2	0.9888915	GCG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr2	178420610	PW1829tail	autochthonous	sgMsh2 aCD4/8	178420610	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.22	77	3	0	0	exonic	Fam217b	nonsynonymous SNV	Fam217b:NM_001081289:exon4:c.G366T:p.E122D	2qH4	chr2-150119227-181573140	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9976036	AGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	26133608	PW1829tail	autochthonous	sgMsh2 aCD4/8	26133608	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	279	0	0	NA	exonic	Nlgn1	nonsynonymous SNV	"Nlgn1:NM_001163387:exon2:c.G127A:p.V43I,Nlgn1:NM_001357095:exon2:c.G127A:p.V43I,Nlgn1:NM_001357096:exon2:c.G127A:p.V43I,Nlgn1:NM_001357097:exon2:c.G127A:p.V43I,Nlgn1:NM_138666:exon3:c.G127A:p.V43I"	3qA3	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.386776798	3	0.997878	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	58618843	PW1829tail	autochthonous	sgMsh2 aCD4/8	58618843	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	253	0	0	NA	exonic	Erich6	synonymous SNV	Erich6:NM_001081262:exon13:c.C1737A:p.S579S	3qD	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.347443564	3	0.9999271	AGG	synonymous	NA	NA	NA	NA
PW1829T7	chr3	63990234	PW1829tail	autochthonous	sgMsh2 aCD4/8	63990234	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	198	217	9	0.041474654	exonic	Gmps	nonsynonymous SNV	Gmps:NM_001033300:exon6:c.A606G:p.I202M	3qE1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.321221408	3	0.9999169	TAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	89761131	PW1829tail	autochthonous	sgMsh2 aCD4/8	89761131	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	192	0	0	NA	exonic	Chrnb2	synonymous SNV	Chrnb2:NM_009602:exon5:c.C876A:p.L292L	3qF1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	3	1	1	0.9999999	CGA	synonymous	GAGG	8	GAGGGAGG	NA
PW1829T7	chr3	94317564	PW1829tail	autochthonous	sgMsh2 aCD4/8	94317564	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	161	37	2	0.054054054	exonic	Them4	nonsynonymous SNV	Them4:NM_029431:exon2:c.A247C:p.T83P	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.537554193	2	0.9985473	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	95502758	PW1829tail	autochthonous	sgMsh2 aCD4/8	95502758	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	175	150	0	0	exonic	Ctsk	synonymous SNV	Ctsk:NM_007802:exon5:c.C576T:p.N192N	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.340888025	3	0.9989253	ACG	synonymous	NA	NA	NA	NA
PW1829T7	chr3	96651783	PW1829tail	autochthonous	sgMsh2 aCD4/8	96651783	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	162	1	0	0	exonic	Itga10	frameshift deletion	Itga10:NM_001302471:exon11:c.1187delG:p.G398Afs*67	3qF2.1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.753886979	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr3	103777867	PW1829tail	autochthonous	sgMsh2 aCD4/8	103777867	G	-	Deletion	Mutect2;Vardict	2	0.037	216	61	3	0.049180328	exonic	Hipk1	frameshift deletion	"Hipk1:NM_001301304:exon2:c.431delC:p.P144Lfs*17,Hipk1:NM_001301306:exon2:c.431delC:p.P144Lfs*17,Hipk1:NM_010432:exon2:c.431delC:p.P144Lfs*17"	3qF2.2	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.242554941	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr3	106128204	PW1829tail	autochthonous	sgMsh2 aCD4/8	106128204	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.026	351	35	0	0	exonic	Chia1	nonsynonymous SNV	Chia1:NM_023186:exon6:c.A535G:p.M179V	3qF2.2	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.170444013	3	1	GAT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	106203846	PW1829tail	autochthonous	sgMsh2 aCD4/8	106203846	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	147	2	0	0	exonic	Chil4	nonsynonymous SNV	Chil4:NM_145126:exon8:c.A731G:p.D244G	3qF2.2	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.327776947	3	0.9983501	ATC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	121973918	PW1829tail	autochthonous	sgMsh2 aCD4/8	121973918	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	105	23	0	0	exonic	Arhgap29	nonsynonymous SNV	"Arhgap29:NM_001356524:exon2:c.C8T:p.A3V,Arhgap29:NM_172525:exon2:c.C8T:p.A3V"	3qG1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.353999103	3	0.963181	GCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	122138467	PW1829tail	autochthonous	sgMsh2 aCD4/8	122138467	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	90	0	0	NA	exonic	Abca4	nonsynonymous SNV	Abca4:NM_007378:exon30:c.G4393A:p.V1465M	3qG1	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.773553595	2	0.6662486	CGT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr3	153938586	PW1829tail	autochthonous	sgMsh2 aCD4/8	153938586	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.022	492	391	15	0.038363171	exonic	Acadm	nonsynonymous SNV	Acadm:NM_007382:exon5:c.G355A:p.V119M	3qH3	chr3-5397880-159913826	6	3	3	0.648	4.247989236	POOR GOF (79.5%)	1	0.144221857	3	1	ACC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr4	28942674	PW1829tail	autochthonous	sgMsh2 aCD4/8	28942674	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	121	2	0	0	exonic	Epha7	synonymous SNV	"Epha7:NM_001122889:exon8:c.C1722T:p.F574F,Epha7:NM_001290434:exon8:c.C1722T:p.F574F,Epha7:NM_010141:exon8:c.C1722T:p.F574F"	4qA4	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.367110181	3	0.9619236	TCG	synonymous	NA	NA	NA	NA
PW1829T7	chr4	32631131	PW1829tail	autochthonous	sgMsh2 aCD4/8	32631131	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	226	13	2	0.153846154	exonic	Casp8ap2	nonsynonymous SNV	"Casp8ap2:NM_001122978:exon4:c.G190A:p.E64K,Casp8ap2:NM_011997:exon4:c.G190A:p.E64K"	4qA5	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.675220511	2	0.9999003	TGA	nonsynonymous	CTGA	8	CTGACTGA	NA
PW1829T7	chr4	32694554	PW1829tail	autochthonous	sgMsh2 aCD4/8	32694554	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	195	0	0	NA	exonic	Mdn1	stopgain	Mdn1:NM_001081392:exon24:c.G3276A:p.W1092X	4qA5	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.694887128	2	0.9985994	GGC	nonsynonymous	TGGC	10	TGGCTGGCTG	NA
PW1829T7	chr4	41602970	PW1829tail	autochthonous	sgMsh2 aCD4/8	41602970	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	37	0	0	NA	exonic	Dnaic1	nonsynonymous SNV	Dnaic1:NM_175138:exon6:c.G472A:p.G158R	4qA5	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	9.74E-06	CGG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr4	47402855	PW1829tail	autochthonous	sgMsh2 aCD4/8	47402855	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	147	64	3	0.046875	exonic	Tgfbr1	synonymous SNV	"Tgfbr1:NM_001312869:exon4:c.A609G:p.G203G,Tgfbr1:NM_001312868:exon5:c.A846G:p.G282G,Tgfbr1:NM_009370:exon5:c.A858G:p.G286G"	4qB1	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.688331589	2	0.9959413	GAT	synonymous	NA	NA	NA	NA
PW1829T7	chr4	115452766	PW1829tail	autochthonous	sgMsh2 aCD4/8	115452766	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.581	50	0	0	NA	exonic	Cyp4a30b	frameshift deletion	Cyp4a30b:NM_001100185:exon1:c.163delC:p.Q58Nfs*7	4qD1	chr4-3973093-116816540	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	3	1	NA	NA	ACC	frameshift	C	10	CCCCCCCCCC	-1
PW1829T7	chr4	121148675	PW1829tail	autochthonous	sgMsh2 aCD4/8	121148675	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	156	38	6	0.157894737	exonic	Rlf	frameshift deletion	Rlf:NM_001346660:exon8:c.3437delA:p.K1146Sfs*10	4qD2.2	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.517887577	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T7	chr4	124856963	PW1829tail	autochthonous	sgMsh2 aCD4/8	124856963	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	155	0	0	NA	exonic	Maneal	nonsynonymous SNV	Maneal:NM_001007573:exon4:c.G999T:p.Q333H	4qD2.2	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.701442667	2	0.9931644	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr4	141479227	PW1829tail	autochthonous	sgMsh2 aCD4/8	141479227	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	75	4	0	0	exonic	Spen	synonymous SNV	"Spen:NM_001347235:exon11:c.C2019T:p.S673S,Spen:NM_019763:exon12:c.C2088T:p.S696S"	4qD3	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.530998654	2	0.9612096	GGG	synonymous	NA	NA	NA	NA
PW1829T7	chr4	141589337	PW1829tail	autochthonous	sgMsh2 aCD4/8	141589337	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	94	75	2	0.026666667	exonic	Fblim1	stopgain	"Fblim1:NM_001163256:exon5:c.G508T:p.E170X,Fblim1:NM_001378958:exon5:c.G508T:p.E170X,Fblim1:NM_001378959:exon5:c.G508T:p.E170X,Fblim1:NM_133754:exon5:c.G508T:p.E170X"	4qD3	chr4-116816541-155946445	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.662109433	2	0.9911215	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	14712715	PW1829tail	autochthonous	sgMsh2 aCD4/8	14712715	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	157	0	0	NA	exonic	Pclo	nonsynonymous SNV	"Pclo:NM_001110796:exon7:c.A11201G:p.N3734S,Pclo:NM_011995:exon7:c.A11201G:p.N3734S"	5qA1	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.491665421	2	0.9702239	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	21375569	PW1829tail	autochthonous	sgMsh2 aCD4/8	21375569	T	C	SNV	Mutect2;Vardict	2	0.032	198	3	0	0	exonic	Fgl2	nonsynonymous SNV	Fgl2:NM_008013:exon2:c.T908C:p.L303P	5qA3	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.209777246	3	1.24E-08	CTC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	23501693	PW1829tail	autochthonous	sgMsh2 aCD4/8	23501693	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	109	54	3	0.055555556	exonic	Kmt2e	nonsynonymous SNV	Kmt2e:NM_026984:exon26:c.A4253G:p.Q1418R	5qA3	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.452332187	2	0.7120847	CAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	69579605	PW1829tail	autochthonous	sgMsh2 aCD4/8	69579605	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	168	262	18	0.06870229	exonic	Gnpda2	nonsynonymous SNV	"Gnpda2:NM_001038015:exon5:c.C497T:p.T166I,Gnpda2:NM_001347363:exon5:c.C491T:p.T164I,Gnpda2:NM_001359239:exon5:c.C497T:p.T166I"	5qC3.1	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.694887128	2	0.9968599	GGT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	103849526	PW1829tail	autochthonous	sgMsh2 aCD4/8	103849526	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	68	28	1	0.035714286	exonic	Aff1	nonsynonymous SNV	"Aff1:NM_001080798:exon19:c.C3509T:p.T1170M,Aff1:NM_133919:exon19:c.C3485T:p.T1162M"	5qE5	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.570331888	2	0.9808017	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	109555631	PW1829tail	autochthonous	sgMsh2 aCD4/8	109555631	G	-	Deletion	Mutect2;Vardict	2	0.266	13	0	0	NA	exonic	Crlf2	stopgain	Crlf2:NM_001164735:exon6:c.679delC:p.L227fs*0	5qF	chr5-3582301-110893400	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	AGG	nonsynonymous	G	5	GGGGG	-1
PW1829T7	chr5	111223752	PW1829tail	autochthonous	sgMsh2 aCD4/8	111223752	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	73	4	1	0.25	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.A2066C:p.E689A	5qF	chr5-111003913-150478141	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.655553894	2	0.9813365	GAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	112328016	PW1829tail	autochthonous	sgMsh2 aCD4/8	112328021	GATGAC	-	Deletion	Strelka2;Vardict	2	0.2617	107	47	5	0.106382979	exonic	Tfip11	nonframeshift deletion	Tfip11:NM_018783:exon3:c.46_51del:p.D19_D20del	5qF	chr5-111003913-150478141	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	TGA	inframe	TGA	21	TGATGATGACGATGACGATGA	-6
PW1829T7	chr5	120771150	PW1829tail	autochthonous	sgMsh2 aCD4/8	120771150	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	79	0	0	NA	exonic	Oas3	nonsynonymous SNV	Oas3:NM_145226:exon4:c.T730C:p.F244L	5qF	chr5-111003913-150478141	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.576887427	2	0.9907509	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr5	120795491	PW1829tail	autochthonous	sgMsh2 aCD4/8	120795491	C	A	SNV	Mutect2;MuSe;Vardict	3	0.085	178	0	0	NA	exonic	Oas1e	nonsynonymous SNV	"Oas1e:NM_001347450:exon1:c.G8T:p.R3M,Oas1e:NM_145210:exon1:c.G8T:p.R3M"	5qF	chr5-111003913-150478141	5	4	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.55722081	2	0.9998082	CCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr6	3700277	PW1829tail	autochthonous	sgMsh2 aCD4/8	3700277	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	104	0	0	NA	exonic	Calcr	nonsynonymous SNV	"Calcr:NM_001042725:exon10:c.A703C:p.S235R,Calcr:NM_001355192:exon10:c.A703C:p.S235R,Calcr:NM_001377018:exon11:c.A814C:p.S272R,Calcr:NM_007588:exon11:c.A814C:p.S272R"	6qA1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	1	0.9997754	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr6	5491883	PW1829tail	autochthonous	sgMsh2 aCD4/8	5491883	A	-	Deletion	Mutect2;Vardict	2	0.08	175	6	0	0	exonic	Pdk4	stopgain	Pdk4:NM_013743:exon4:c.476delT:p.L159fs*0	6qA1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.524443116	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
PW1829T7	chr6	29473344	PW1829tail	autochthonous	sgMsh2 aCD4/8	29473344	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	208	0	0	NA	exonic	Atp6v1fnb	synonymous SNV	Atp6v1fnb:NM_001145360:exon2:c.T471C:p.I157I	6qA3.3	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.426110031	3	0.7521465	TTG	synonymous	NA	NA	NA	NA
PW1829T7	chr6	40879378	PW1829tail	autochthonous	sgMsh2 aCD4/8	40879378	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	118	0	0	NA	exonic	Moxd2	nonsynonymous SNV	Moxd2:NM_139296:exon12:c.A1559C:p.K520T	6qB1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.406443415	3	0.7791541	CTT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr6	43236368	PW1829tail	autochthonous	sgMsh2 aCD4/8	43236368	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	309	0	0	NA	exonic	Olfr47	synonymous SNV	Olfr47:NM_146370:exon1:c.T759C:p.S253S	6qB2.1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.635887278	2	4.16E-08	GTG	synonymous	NA	NA	NA	NA
PW1829T7	chr6	103698186	PW1829tail	autochthonous	sgMsh2 aCD4/8	103698186	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.377	168	0	0	NA	exonic	Chl1	synonymous SNV	Chl1:NM_007697:exon15:c.T1785G:p.T595T	6qE1	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	2	1	1	0.9999992	CTT	synonymous	NA	NA	NA	NA
PW1829T7	chr6	111359051	PW1829tail	autochthonous	sgMsh2 aCD4/8	111359051	T	-	Deletion	Strelka2;Vardict	2	0.0874	103	0	0	NA	exonic	Grm7	frameshift deletion	"Grm7:NM_001346640:exon8:c.2422delT:p.F809Lfs*20,Grm7:NM_177328:exon8:c.2422delT:p.F809Lfs*20"	6qE3	chr6-3494310-113068119	4	3	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.572954104	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr6	143203392	PW1829tail	autochthonous	sgMsh2 aCD4/8	143203392	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	243	51	1	0.019607843	exonic	Etnk1	nonsynonymous SNV	Etnk1:NM_029250:exon8:c.T1028G:p.V343G	6qG3	chr6-113104747-145247059	5	3	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.281888175	3	0.9999998	GTT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr7	5486431	PW1829tail	autochthonous	sgMsh2 aCD4/8	5486431	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	218	0	0	NA	exonic	Vmn2r28	frameshift deletion	Vmn2r28:NM_001081405:exon4:c.1408delT:p.W470Gfs*10	7qA1	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW1829T7	chr7	51574860	PW1829tail	autochthonous	sgMsh2 aCD4/8	51574860	T	-	Deletion	Strelka2;Vardict	2	0.2442	86	0	0	NA	exonic	Ano5	frameshift deletion	"Ano5:NM_001271879:exon14:c.1521delT:p.Y510Mfs*37,Ano5:NM_177694:exon15:c.1563delT:p.Y524Mfs*25"	7qB4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW1829T7	chr7	51583760	PW1829tail	autochthonous	sgMsh2 aCD4/8	51583760	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	105	0	0	NA	exonic	Ano5	nonsynonymous SNV	"Ano5:NM_001271879:exon17:c.A1769T:p.E590V,Ano5:NM_177694:exon18:c.A1919T:p.E640V"	7qB4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9997943	GAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr7	59986816	PW1829tail	autochthonous	sgMsh2 aCD4/8	59986816	C	-	Deletion	Mutect2;Vardict	2	0.033	329	6	0	0	exonic	Snrpn	frameshift deletion	"Snrpn:NM_013670:exon6:c.223delG:p.E75Rfs*5,Snrpn:NM_001082961:exon7:c.223delG:p.E75Rfs*5,Snrpn:NM_001082962:exon7:c.223delG:p.E75Rfs*5,Snrpn:NM_001349691:exon7:c.223delG:p.E75Rfs*5,Snrpn:NM_001349694:exon7:c.223delG:p.E75Rfs*5,Snrpn:NM_001349695:exon7:c.223delG:p.E75Rfs*5,Snrpn:NM_001349693:exon9:c.223delG:p.E75Rfs*5,Snrpn:NM_001349690:exon11:c.223delG:p.E75Rfs*5,Snrpn:NM_001349692:exon11:c.223delG:p.E75Rfs*5"	7qB5	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.216332785	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW1829T7	chr7	80329031	PW1829tail	autochthonous	sgMsh2 aCD4/8	80329031	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	32	39	8	0.205128205	exonic	Unc45a	synonymous SNV	Unc45a:NM_133952:exon13:c.G1869A:p.Q623Q	7qD2	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.8891221	GCT	synonymous	NA	NA	NA	NA
PW1829T7	chr7	116343058	PW1829tail	autochthonous	sgMsh2 aCD4/8	116343059	TG	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	100	94	0	0	exonic	Pik3c2a	frameshift deletion	Pik3c2a:NM_011083:exon29:c.4485_4486del:p.I1496Kfs*9	7qF1	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.707998206	NA	NA	ATG	frameshift	NA	NA	NA	-2
PW1829T7	chr7	118852842	PW1829tail	autochthonous	sgMsh2 aCD4/8	118852842	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.254	51	64	6	0.09375	exonic	Knop1	frameshift deletion	Knop1:NM_023197:exon2:c.653delA:p.K218Rfs*25	7qF2	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T7	chr7	127750930	PW1829tail	autochthonous	sgMsh2 aCD4/8	127750930	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.245	52	19	4	0.210526316	exonic	Fbxl19	synonymous SNV	Fbxl19:NM_172748:exon6:c.G693A:p.A231A	7qF3	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	9.89E-08	CGG	synonymous	NA	NA	NA	NA
PW1829T7	chr7	135694393	PW1829tail	autochthonous	sgMsh2 aCD4/8	135694393	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	173	16	1	0.0625	exonic	Mki67	frameshift deletion	Mki67:NM_001081117:exon12:c.8911delA:p.R2971Gfs*13	7qF3	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.517887577	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW1829T7	chr7	140652803	PW1829tail	autochthonous	sgMsh2 aCD4/8	140652803	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	494	0	0	NA	exonic	Olfr53	nonsynonymous SNV	Olfr53:NM_146960:exon2:c.T823G:p.F275V	7qF4	chr7-4571705-143618290	3	2	1	0.648	4.247989236	POOR GOF (79.5%)	1	0.727664823	2	0.9999069	ATT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	40375596	PW1829tail	autochthonous	sgMsh2 aCD4/8	40375596	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.313	82	8	2	0.25	exonic	Micu3	frameshift deletion	Micu3:NM_030110:exon10:c.1023delA:p.G344Efs*21	8qA4	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW1829T7	chr8	60927403	PW1829tail	autochthonous	sgMsh2 aCD4/8	60927403	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.098	58	2	0	0	exonic	Clcn3	nonsynonymous SNV	"Clcn3:NM_007711:exon9:c.T1405G:p.F469V,Clcn3:NM_173876:exon9:c.T1498G:p.F500V,Clcn3:NM_173873:exon10:c.T1579G:p.F527V,Clcn3:NM_173874:exon10:c.T1579G:p.F527V"	8qB3.1	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.642442817	2	0.9694381	AAC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	67719919	PW1829tail	autochthonous	sgMsh2 aCD4/8	67719919	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	103	0	0	NA	exonic	Psd3	nonsynonymous SNV	"Psd3:NM_027626:exon6:c.C752T:p.T251I,Psd3:NM_030263:exon11:c.C1178T:p.T393I,Psd3:NM_177698:exon13:c.C2636T:p.T879I"	8qB3.2	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.550665271	2	0.9930853	AGT	nonsynonymous	TGGC	8	TGGCTGGC	NA
PW1829T7	chr8	71490361	PW1829tail	autochthonous	sgMsh2 aCD4/8	71490361	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.228	56	36	5	0.138888889	exonic	Gtpbp3	nonsynonymous SNV	Gtpbp3:NM_032544:exon4:c.G415A:p.E139K	8qB3.3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9850567	CGA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	71684012	PW1829tail	autochthonous	sgMsh2 aCD4/8	71684012	G	-	Deletion	Mutect2;Vardict	2	0.11	65	13	0	0	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.721109284	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW1829T7	chr8	72246754	PW1829tail	autochthonous	sgMsh2 aCD4/8	72246754	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	146	65	11	0.169230769	exonic	Ap1m1	nonsynonymous SNV	Ap1m1:NM_007456:exon2:c.G158A:p.G53D	8qB3.3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.544109732	2	0.9982994	GGT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	73116437	PW1829tail	autochthonous	sgMsh2 aCD4/8	73116437	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	213	30	5	0.166666667	exonic	Large1	nonsynonymous SNV	"Large1:NM_010687:exon4:c.G457A:p.V153I,Large1:NM_001317391:exon5:c.G457A:p.V153I"	8qB3.3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.80633129	1	0.885963	ACG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	80044005	PW1829tail	autochthonous	sgMsh2 aCD4/8	80044005	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.116	48	0	0	NA	exonic	Hhip	stopgain	Hhip:NM_020259:exon4:c.G772T:p.G258X	8qC1	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.760442518	2	0.000839706	CCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr8	83572316	PW1829tail	autochthonous	sgMsh2 aCD4/8	83572316	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	83	546	58	0.106227106	exonic	Tecr	synonymous SNV	"Tecr:NM_027179:exon10:c.G624A:p.S208S,Tecr:NM_134118:exon11:c.G669A:p.S223S"	8qC2	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.734220362	2	0.8758156	TCG	synonymous	NA	NA	NA	NA
PW1829T7	chr8	84134730	PW1829tail	autochthonous	sgMsh2 aCD4/8	84134730	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	42	16	1	0.0625	exonic	Cc2d1a	frameshift deletion	"Cc2d1a:NM_001381872:exon22:c.2118delG:p.R707Gfs*3,Cc2d1a:NM_001381871:exon23:c.2322delG:p.R775Gfs*3,Cc2d1a:NM_001381873:exon23:c.2229delG:p.R744Gfs*3,Cc2d1a:NM_145970:exon23:c.2325delG:p.R776Gfs*3"	8qC2	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.753886979	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW1829T7	chr8	107368660	PW1829tail	autochthonous	sgMsh2 aCD4/8	107368660	T	-	Deletion	Mutect2;Vardict	2	0.078	120	36	5	0.138888889	exonic	Nfat5	frameshift deletion	"Nfat5:NM_001286260:exon12:c.3478delT:p.F1161Lfs*58,Nfat5:NM_018823:exon13:c.3532delT:p.F1179Lfs*77,Nfat5:NM_133957:exon14:c.3250delT:p.F1085Lfs*77"	8qD3	chr8-3153818-128493272	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.511332038	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW1829T7	chr9	9238736	PW1829tail	autochthonous	sgMsh2 aCD4/8	9238736	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.25	13	11	1	0.090909091	exonic	Arhgap42	nonsynonymous SNV	"Arhgap42:NM_001372563:exon1:c.G44A:p.S15N,Arhgap42:NM_001372564:exon1:c.G44A:p.S15N,Arhgap42:NM_001372565:exon1:c.G44A:p.S15N,Arhgap42:NM_001372566:exon1:c.G44A:p.S15N,Arhgap42:NM_001372567:exon1:c.G44A:p.S15N,Arhgap42:NM_001372568:exon1:c.G44A:p.S15N,Arhgap42:NM_001372569:exon1:c.G44A:p.S15N,Arhgap42:NM_001372570:exon1:c.G44A:p.S15N,Arhgap42:NM_027823:exon1:c.G44A:p.S15N"	9qA1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.5957436	GCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr9	38449187	PW1829tail	autochthonous	sgMsh2 aCD4/8	38449187	G	-	Deletion	Strelka2;Vardict	2	0.24	275	0	0	NA	exonic	Olfr902	frameshift deletion	Olfr902:NM_146802:exon1:c.314delG:p.C105Ffs*10	9qA5.1	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	NA	NA	TGT	frameshift	T	5	TTTTT	-1
PW1829T7	chr9	44509653	PW1829tail	autochthonous	sgMsh2 aCD4/8	44509653	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	21	23	6	0.260869565	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon8:c.G4244A:p.G1415D,Bcl9l:NM_030256:exon9:c.G4355A:p.G1452D"	9qA5.2	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	2	1	1	0.7525475	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr9	45408141	PW1829tail	autochthonous	sgMsh2 aCD4/8	45408141	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	68	0	0	NA	exonic	Fxyd2	nonsynonymous SNV	"Fxyd2:NM_007503:exon2:c.T73C:p.Y25H,Fxyd2:NM_052823:exon2:c.T55C:p.Y19H"	9qA5.2	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.924330991	1	0.9628954	GTA	nonsynonymous	NA	NA	NA	NA
PW1829T7	chr9	54477484	PW1829tail	autochthonous	sgMsh2 aCD4/8	54477484	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.118	119	2	0	0	exonic	Dmxl2	frameshift insertion	Dmxl2:NM_172771:exon3:c.257dupT:p.V88Cfs*4	9qA5.3	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	0.773553595	NA	NA	CCA	frameshift	NA	NA	NA	1
PW1829T7	chr9	120018362	PW1829tail	autochthonous	sgMsh2 aCD4/8	120018362	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.24	82	0	0	NA	exonic	Xirp1	nonsynonymous SNV	Xirp1:NM_011724:exon2:c.C1454T:p.A485V	9qF4	chr9-7130668-124127224	4	2	2	0.648	4.247989236	POOR GOF (79.5%)	1	1	1	0.9984535	GGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chrX	60010042	PW1829tail	autochthonous	sgMsh2 aCD4/8	60010042	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	85	0	0	NA	exonic	F9	nonsynonymous SNV	F9:NM_007979:exon4:c.A319G:p.I107V	XqA6	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chrX	64272724	PW1829tail	autochthonous	sgMsh2 aCD4/8	64272724	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	85	0	0	NA	exonic	Slitrk4	synonymous SNV	"Slitrk4:NM_001365112:exon2:c.G336A:p.L112L,Slitrk4:NM_178740:exon3:c.G336A:p.L112L,Slitrk4:NM_001365111:exon4:c.G336A:p.L112L"	XqA7.1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	GCA	synonymous	NA	NA	NA	NA
PW1829T7	chrX	73202058	PW1829tail	autochthonous	sgMsh2 aCD4/8	73202058	G	C	SNV	Mutect2;MuSe;Vardict	3	0.123	163	0	0	NA	exonic	Xlr3b	nonsynonymous SNV	Xlr3b:NM_001081643:exon9:c.G643C:p.A215P	XqA7.3	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	TGC	nonsynonymous	CTG	8	CTGCTGCT	NA
PW1829T7	chrX	89930981	PW1829tail	autochthonous	sgMsh2 aCD4/8	89930981	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.151	103	0	0	NA	exonic	4930415L06Rik	nonsynonymous SNV	4930415L06Rik:NM_001033880:exon2:c.T1609C:p.Y537H	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	TAA	nonsynonymous	AATGT	10	AATGTAATGT	NA
PW1829T7	chrX	89932293	PW1829tail	autochthonous	sgMsh2 aCD4/8	89932293	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	174	0	0	NA	exonic	4930415L06Rik	synonymous SNV	4930415L06Rik:NM_001033880:exon2:c.A297G:p.P99P	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	TTG	synonymous	NA	NA	NA	NA
PW1829T7	chrX	90892962	PW1829tail	autochthonous	sgMsh2 aCD4/8	90892962	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.096	53	0	0	NA	exonic	Gm44	nonsynonymous SNV	Gm44:NM_001101450:exon1:c.A821C:p.K274T	XqC1	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
PW1829T7	chrX	107292907	PW1829tail	autochthonous	sgMsh2 aCD4/8	107292907	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	143	0	0	NA	exonic	Gpr174	nonsynonymous SNV	"Gpr174:NM_001177782:exon3:c.C324A:p.F108L,Gpr174:NM_001033251:exon5:c.C324A:p.F108L,Gpr174:NM_001177781:exon5:c.C324A:p.F108L,Gpr174:NM_001358747:exon5:c.C324A:p.F108L"	XqD	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
PW1829T7	chrX	142305965	PW1829tail	autochthonous	sgMsh2 aCD4/8	142305965	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	46	0	0	NA	exonic	Kcne1l	nonsynonymous SNV	Kcne1l:NM_021487:exon1:c.C61T:p.H21Y	XqF2	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
PW1829T7	chrX	164213550	PW1829tail	autochthonous	sgMsh2 aCD4/8	164213550	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.15	102	0	0	NA	exonic	Bmx	nonsynonymous SNV	Bmx:NM_009759:exon12:c.A1019G:p.Y340C	XqF5	NA	NA	NA	NA	0.648	4.247989236	POOR GOF (79.5%)	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr1	26687411	PW2017tail	colon	sgMsh2	26687411	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	375	0	0	NA	exonic	4931408C20Rik	nonsynonymous SNV	4931408C20Rik:NM_001033764:exon1:c.C16A:p.L6I	1qA5	chr1-4867294-193330675	2	2	0	0.497	2	NON-ABERRANT	1	0.193158954	3	0.9673119	AGG	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr10	7120429	PW2017tail	colon	sgMsh2	7120429	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.463	81	0	0	NA	exonic	Cnksr3	synonymous SNV	Cnksr3:NM_172546:exon13:c.C1527T:p.S509S	10qA1	chr10-5218416-130453386	2	1	1	0.497	2	NON-ABERRANT	1	0.931589537	1	1.17E-09	CGG	synonymous	NA	NA	NA	NA
PW2016T1	chr10	23961298	PW2017tail	colon	sgMsh2	23961298	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	225	0	0	NA	exonic	Taar4	nonsynonymous SNV	Taar4:NM_001008499:exon1:c.T805C:p.F269L	10qA4	chr10-5218416-130453386	2	1	1	0.497	2	NON-ABERRANT	1	0.382293763	2	0.9999995	GTT	nonsynonymous	TTGTG	13	TTGTGTTGTGTTG	NA
PW2016T1	chr11	30842075	PW2017tail	colon	sgMsh2	30842075	T	-	Deletion	Mutect2;Vardict	2	0.055	231	0	0	NA	exonic	Psme4	frameshift deletion	Psme4:NM_134013:exon31:c.3561delT:p.F1189Lfs*26	11qA4	chr11-3133205-121956619	2	1	1	0.497	2	NON-ABERRANT	1	0.221327968	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2016T1	chr11	53186368	PW2017tail	colon	sgMsh2	53186368	C	A	SNV	Mutect2;Vardict	2	0.049	85	0	0	NA	exonic	Fstl4	nonsynonymous SNV	Fstl4:NM_177059:exon16:c.C1951A:p.L651I	11qB1.3	chr11-3133205-121956619	2	1	1	0.497	2	NON-ABERRANT	1	0.197183099	3	0.6491454	CCT	nonsynonymous	CACC	8	CACCCACC	NA
PW2016T1	chr13	47239741	PW2017tail	colon	sgMsh2	47239741	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	127	0	0	NA	exonic	Rnf144b	synonymous SNV	"Rnf144b:NM_001170643:exon6:c.C555T:p.D185D,Rnf144b:NM_146042:exon6:c.C555T:p.D185D"	13qA5	chr13-3559926-119495179	2	1	1	0.497	2	NON-ABERRANT	1	0.245472837	2	0.8087284	ACG	synonymous	C	5	CCCCC	NA
PW2016T1	chr13	67257022	PW2017tail	colon	sgMsh2	67257022	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	105	0	0	NA	exonic	Zfp458	nonsynonymous SNV	Zfp458:NM_001001152:exon4:c.G1352A:p.G451D	13qB3	chr13-3559926-119495179	2	1	1	0.497	2	NON-ABERRANT	1	0.209255533	3	0.5684448	GCC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr15	6435633	PW2017tail	colon	sgMsh2	6435633	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	94	0	0	NA	exonic	Dab2	nonsynonymous SNV	"Dab2:NM_001102400:exon10:c.A1247G:p.D416G,Dab2:NM_001008702:exon11:c.A1310G:p.D437G,Dab2:NM_001037905:exon11:c.A1310G:p.D437G,Dab2:NM_001310446:exon11:c.A1901G:p.D634G,Dab2:NM_023118:exon12:c.A1964G:p.D655G"	15qA1	chr15-4091145-102485857	2	1	1	0.497	2	NON-ABERRANT	1	0.229376258	2	0.6196838	GAC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr17	36672132	PW2017tail	colon	sgMsh2	36672132	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	213	0	0	NA	exonic	H2-M1	nonsynonymous SNV	H2-M1:NM_177636:exon1:c.T66A:p.H22Q	17qB1	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.14889336	3	0.9961758	GAT	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr17	38275383	PW2017tail	colon	sgMsh2	38275383	T	-	Deletion	Mutect2;Vardict	2	0.045	182	0	0	NA	exonic	Olfr138	frameshift deletion	Olfr138:NM_130868:exon1:c.611delT:p.F205Lfs*8	17qB1	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.181086519	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2016T1	chr17	87718638	PW2017tail	colon	sgMsh2	87718638	-	A	Insertion	Strelka2;Vardict	2	0.2353	68	0	0	NA	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.946881288	NA	NA	AGA	frameshift	NA	NA	NA	1
PW2016T1	chr17	87719328	PW2017tail	colon	sgMsh2	87719351	GGAAGAGGAACCTCTACCTATGAT	-	Deletion	Mutect2;Vardict	2	0.024	295	0	0	NA	exonic	Msh2	nonframeshift deletion	Msh2:NM_008628:exon14:c.2251_2274del:p.R752_G759del	17qE4	chr17-3635190-90208269	2	2	0	0.497	2	NON-ABERRANT	1	0.096579477	NA	NA	GGG	inframe	NA	NA	NA	-24
PW2016T1	chr18	34312304	PW2017tail	colon	sgMsh2	34312304	-	C	Insertion	Strelka2;Vardict	2	0.0588	82	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.236619718	NA	NA	CAC	frameshift	NA	NA	NA	1
PW2016T1	chr18	34312449	PW2017tail	colon	sgMsh2	34312449	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	214	0	0	NA	exonic	Apc	synonymous SNV	"Apc:NM_001360979:exon16:c.T2220C:p.F740F,Apc:NM_007462:exon16:c.T2397C:p.F799F,Apc:NM_001360980:exon17:c.T2451C:p.F817F"	18qB1	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.342052314	2	0.9999699	TTG	synonymous	NA	NA	NA	NA
PW2016T1	chr18	34462065	PW2017tail	colon	sgMsh2	34462065	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	140	0	0	NA	exonic	Fam13b	nonsynonymous SNV	Fam13b:NM_146084:exon11:c.G1245C:p.W415C	18qB1	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.29778672	2	0.988129	CCC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr18	36975478	PW2017tail	colon	sgMsh2	36975478	G	A	SNV	Mutect2;Vardict	2	0.041	465	0	0	NA	exonic	Gm38667;Pcdha7	nonsynonymous SNV	"Gm38667:NM_001301259:exon1:c.G1582A:p.A528T,Pcdha7:NM_009957:exon1:c.G1582A:p.A528T"	18qB2	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.16498994	3	0.9999065	CGC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr18	42578908	PW2017tail	colon	sgMsh2	42578908	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	68	0	0	NA	exonic	Gpr151	nonsynonymous SNV	Gpr151:NM_181543:exon1:c.C704T:p.T235I	18qB3	chr18-3325290-84947472	2	1	1	0.497	2	NON-ABERRANT	1	0.366197183	2	0.9813247	TGT	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr19	33579489	PW2017tail	colon	sgMsh2	33579489	G	A	SNV	Mutect2;Vardict	2	0.027	211	0	0	NA	exonic	Lipo3	nonsynonymous SNV	Lipo3:NM_001013770:exon7:c.C536T:p.A179V	19qC1	chr19-4320845-61225035	2	1	1	0.497	2	NON-ABERRANT	1	0.108651911	3	0.9998488	TGC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr2	82977793	PW2017tail	colon	sgMsh2	82977793	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	235	0	0	NA	exonic	Fsip2	synonymous SNV	Fsip2:NM_001370266:exon16:c.A4449G:p.E1483E	2qD	chr2-4925576-181511691	2	1	1	0.497	2	NON-ABERRANT	1	0.092555332	3	0.9999872	AAA	synonymous	NA	NA	NA	NA
PW2016T1	chr2	111368995	PW2017tail	colon	sgMsh2	111368995	A	G	SNV	Mutect2;Vardict	2	0.024	477	0	0	NA	exonic	Olfr1283	nonsynonymous SNV	Olfr1283:NM_207236:exon1:c.A362G:p.D121G	2qE3	chr2-4925576-181511691	2	1	1	0.497	2	NON-ABERRANT	1	0.096579477	3	1.24E-09	GAC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr4	55080836	PW2017tail	colon	sgMsh2	55080836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	148	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon13:c.A7451G:p.K2484R	4qB2	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	1	1	1	AAA	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr4	55528245	PW2017tail	colon	sgMsh2	55528245	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	33	0	0	NA	exonic	Klf4	synonymous SNV	Klf4:NM_010637:exon5:c.C1332G:p.S444S	4qB3	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	0.790744467	1	0.9939557	CGG	synonymous	NA	NA	NA	NA
PW2016T1	chr4	57648026	PW2017tail	colon	sgMsh2	57648026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	104	0	0	NA	exonic	Pakap	nonsynonymous SNV	"Pakap:NM_001304544:exon3:c.G163A:p.V55I,Pakap:NM_172868:exon3:c.G163A:p.V55I,Pakap:NM_001384149:exon4:c.G169A:p.V57I,Pakap:NM_001384150:exon4:c.G163A:p.V55I,Pakap:NM_001384157:exon4:c.G169A:p.V57I"	4qB3	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	1	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr4	85100388	PW2017tail	colon	sgMsh2	85100388	A	-	Deletion	Mutect2;Vardict	2	0.07	92	0	0	NA	exonic	Cntln	frameshift deletion	Cntln:NM_175275:exon22:c.3632delA:p.K1213Rfs*4	4qC4	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	0.281690141	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2016T1	chr4	148614360	PW2017tail	colon	sgMsh2	148614360	G	-	Deletion	Mutect2;Vardict	2	0.037	203	0	0	NA	exonic	Masp2	frameshift deletion	Masp2:NM_001003893:exon11:c.1897delG:p.A635Hfs*1	4qE2	chr4-5799947-155823524	2	1	1	0.497	2	NON-ABERRANT	1	0.14889336	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2016T1	chr5	8449677	PW2017tail	colon	sgMsh2	8449677	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	122	0	0	NA	exonic	Slc25a40	nonsynonymous SNV	"Slc25a40:NM_001289595:exon9:c.C809T:p.T270M,Slc25a40:NM_001289596:exon10:c.C620T:p.T207M,Slc25a40:NM_178766:exon10:c.C809T:p.T270M"	5qA1	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.169014085	3	0.09755094	ACG	nonsynonymous	GAAT	8	GAATGAAT	NA
PW2016T1	chr5	34640976	PW2017tail	colon	sgMsh2	34640976	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	94	0	0	NA	exonic	Nop14	nonsynonymous SNV	Nop14:NM_029278:exon15:c.G2102A:p.C701Y	5qB2	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.277665996	2	0.09575548	GCA	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr5	120483599	PW2017tail	colon	sgMsh2	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	18	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	2	0.790744467	1	0.9324491	CGC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr5	144901271	PW2017tail	colon	sgMsh2	144901271	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.087	71	0	0	NA	exonic	Smurf1	nonsynonymous SNV	"Smurf1:NM_001038627:exon3:c.T109G:p.F37V,Smurf1:NM_029438:exon3:c.T109G:p.F37V"	5qG2	chr5-3673201-150478141	2	2	0	0.497	2	NON-ABERRANT	1	0.350100604	2	0.9757083	AAG	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr7	25290680	PW2017tail	colon	sgMsh2	25290680	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	50	0	0	NA	exonic	Cic	nonsynonymous SNV	"Cic:NM_027882:exon12:c.C2990A:p.P997H,Cic:NM_001302811:exon13:c.C5711A:p.P1904H"	7qA3	chr7-4554068-142989150	2	1	1	0.497	2	NON-ABERRANT	1	0.334004024	2	0.09137886	CCC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chr7	79737849	PW2017tail	colon	sgMsh2	79737849	A	G	SNV	Mutect2;Vardict	2	0.049	107	0	0	NA	exonic	Pex11a	synonymous SNV	Pex11a:NM_011068:exon3:c.T234C:p.A78A	7qD2	chr7-4554068-142989150	2	1	1	0.497	2	NON-ABERRANT	1	0.197183099	3	0.6859554	CAG	synonymous	NA	NA	NA	NA
PW2016T1	chr8	69902517	PW2017tail	colon	sgMsh2	69902517	G	A	SNV	Mutect2;Vardict	2	0.057	78	0	0	NA	exonic	Tssk6	synonymous SNV	Tssk6:NM_032004:exon1:c.G210A:p.P70P	8qB3.3	chr8-3194938-126969919	2	1	1	0.497	2	NON-ABERRANT	1	0.229376258	2	0.6009779	CGC	synonymous	NA	NA	NA	NA
PW2016T1	chr9	119193323	PW2017tail	colon	sgMsh2	119193323	A	C	SNV	Mutect2;Vardict	2	0.065	215	0	0	NA	exonic	Slc22a13	synonymous SNV	Slc22a13:NM_133980:exon10:c.T1614G:p.T538T	9qF3	chr9-7282188-124127224	2	1	1	0.497	2	NON-ABERRANT	1	0.261569416	2	0.9772987	AAG	synonymous	NA	NA	NA	NA
PW2016T1	chrX	72552747	PW2017tail	colon	sgMsh2	72552747	G	T	SNV	Mutect2;Vardict	2	0.057	77	0	0	NA	exonic	Gabra3	nonsynonymous SNV	"Gabra3:NM_001357814:exon2:c.C70A:p.P24T,Gabra3:NM_001357815:exon2:c.C112A:p.P38T,Gabra3:NM_001357816:exon2:c.C163A:p.P55T,Gabra3:NM_008067:exon2:c.C70A:p.P24T,Gabra3:NM_001358103:exon3:c.C70A:p.P24T"	XqA7.3	NA	NA	NA	NA	0.497	2	NON-ABERRANT	NA	NA	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
PW2016T1	chrX	100733652	PW2017tail	colon	sgMsh2	100733652	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	52	0	0	NA	exonic	Gdpd2	nonsynonymous SNV	"Gdpd2:NM_001305941:exon7:c.G469T:p.A157S,Gdpd2:NM_001358507:exon7:c.G469T:p.A157S,Gdpd2:NM_023608:exon7:c.G469T:p.A157S"	XqC3	NA	NA	NA	NA	0.497	2	NON-ABERRANT	NA	NA	NA	NA	AGC	nonsynonymous	NA	NA	NA	NA
PW2016T1	chrX	154339505	PW2017tail	colon	sgMsh2	154339505	C	T	SNV	Mutect2;Vardict	2	0.035	152	0	0	NA	exonic	Samt2b	nonsynonymous SNV	Samt2b:NM_001256259:exon3:c.G538A:p.A180T	XqF3	NA	NA	NA	NA	0.497	2	NON-ABERRANT	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	9880353	PW2017tail	colon	sgMsh2	9880353	T	-	Deletion	Mutect2;Vardict	2	0.039	194	0	0	NA	exonic	Sgk3	frameshift deletion	"Sgk3:NM_001037759:exon8:c.489delT:p.L165fs*0,Sgk3:NM_177547:exon8:c.489delT:p.L165fs*0,Sgk3:NM_133220:exon9:c.489delT:p.L165fs*0"	1qA2	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr1	16131170	PW2017tail	colon	sgMsh2	16131170	C	-	Deletion	Strelka2;Vardict	2	0.0549	91	0	0	NA	exonic	Rdh10	frameshift deletion	Rdh10:NM_133832:exon5:c.866delC:p.R291Afs*5	1qA3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.149591281	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T1	chr1	37841199	PW2017tail	colon	sgMsh2	37841199	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	125	0	0	NA	exonic	Tsga10	nonsynonymous SNV	"Tsga10:NM_001290721:exon4:c.T37G:p.S13A,Tsga10:NM_001290720:exon5:c.T37G:p.S13A,Tsga10:NM_207228:exon5:c.T37G:p.S13A"	1qB	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.128065395	3	0.8350146	GAT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	46233873	PW2017tail	colon	sgMsh2	46233873	G	A	SNV	Mutect2;MuSe;Vardict	3	0.069	300	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon41:c.G7028A:p.G2343D	1qC1.1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.188010899	2	0.9707379	GGC	nonsynonymous	GGTGGG	12	GGTGGGGGTGGG	NA
PW2017T1	chr1	46373349	PW2017tail	colon	sgMsh2	46373349	T	C	SNV	Mutect2;Vardict	2	0.029	268	0	0	NA	exonic	Dnah7b	synonymous SNV	Dnah7b:NM_001368717:exon65:c.T11985C:p.N3995N	1qC1.1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.079019074	3	0.999849	ATT	synonymous	NA	NA	NA	NA
PW2017T1	chr1	54434147	PW2017tail	colon	sgMsh2	54434147	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	141	0	0	NA	exonic	Gtf3c3	synonymous SNV	Gtf3c3:NM_001033194:exon3:c.G306A:p.E102E	1qC1.1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.38147139	2	0.9998685	CCT	synonymous	TCC	26	TCCTCCTCCTCCTCTTCTTCCTCCTC	NA
PW2017T1	chr1	59183834	PW2017tail	colon	sgMsh2	59183834	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	296	0	0	NA	exonic	Als2	synonymous SNV	"Als2:NM_001159948:exon20:c.C3276T:p.D1092D,Als2:NM_028717:exon20:c.C3276T:p.D1092D"	1qC1.3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.073569482	3	0.9999687	GGT	synonymous	NA	NA	NA	NA
PW2017T1	chr1	71260985	PW2017tail	colon	sgMsh2	71260985	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	70	0	0	NA	exonic	Abca12	nonsynonymous SNV	Abca12:NM_175210:exon45:c.G6648C:p.R2216S	1qC3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.910081744	1	2.08E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	77506952	PW2017tail	colon	sgMsh2	77506952	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	177	0	0	NA	exonic	Epha4	nonsynonymous SNV	Epha4:NM_007936:exon3:c.G419T:p.S140I	1qC4	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.138964578	3	0.8165121	GCT	nonsynonymous	CT	8	CTCTCTCT	NA
PW2017T1	chr1	85818403	PW2017tail	colon	sgMsh2	85818403	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	84	0	0	NA	exonic	Cab39	nonsynonymous SNV	"Cab39:NM_133781:exon2:c.C4T:p.P2S,Cab39:NM_001355046:exon3:c.C4T:p.P2S,Cab39:NM_001355047:exon3:c.C4T:p.P2S"	1qC5	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.209809264	2	0.8455813	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	86351008	PW2017tail	colon	sgMsh2	86351008	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	113	0	0	NA	exonic	Ncl	nonsynonymous SNV	Ncl:NM_010880:exon13:c.G1851T:p.E617D	1qC5	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.326975477	2	0.9995451	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	88205069	PW2017tail	colon	sgMsh2	88205069	T	-	Deletion	Mutect2;Vardict	2	0.045	138	0	0	NA	exonic	Dnajb3	frameshift deletion	Dnajb3:NM_008299:exon1:c.610delA:p.I204Sfs*21	1qD	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr1	93078818	PW2017tail	colon	sgMsh2	93078818	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	126	0	0	NA	exonic	Kif1a	synonymous SNV	"Kif1a:NM_001294150:exon2:c.G126A:p.Q42Q,Kif1a:NM_001110315:exon3:c.G126A:p.Q42Q,Kif1a:NM_001294149:exon3:c.G126A:p.Q42Q,Kif1a:NM_001368847:exon3:c.G126A:p.Q42Q,Kif1a:NM_008440:exon3:c.G126A:p.Q42Q"	1qD	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.245231608	2	0.987767	GCT	synonymous	NA	NA	NA	NA
PW2017T1	chr1	105691924	PW2017tail	colon	sgMsh2	105691924	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.102	203	0	0	NA	exonic	Relch	frameshift insertion	"Relch:NM_029349:exon5:c.806dupA:p.D269Efs*37,Relch:NM_173187:exon6:c.878dupA:p.D293Efs*37"	1qE2.1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.277929155	NA	NA	TGA	frameshift	NA	NA	NA	1
PW2017T1	chr1	131756678	PW2017tail	colon	sgMsh2	131756678	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.082	167	0	0	NA	exonic	Slc26a9	frameshift deletion	Slc26a9:NM_177243:exon8:c.912delA:p.K306Nfs*63	1qE4	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.223433243	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr1	139479615	PW2017tail	colon	sgMsh2	139479615	G	A	SNV	Mutect2;Vardict	2	0.05	82	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon18:c.G6239A:p.R2080H	1qE4	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.136239782	3	0.690683	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	157176143	PW2017tail	colon	sgMsh2	157176143	T	-	Deletion	Strelka2;Vardict	2	0.1314	137	0	0	NA	exonic	Rasal2	frameshift deletion	Rasal2:NM_177644:exon8:c.999delA:p.K333Nfs*61	1qH1	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.358038147	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
PW2017T1	chr1	169984942	PW2017tail	colon	sgMsh2	169984942	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	136	0	0	NA	exonic	Ddr2	synonymous SNV	Ddr2:NM_022563:exon14:c.A1980G:p.G660G	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.155313351	3	0.561788	CTC	synonymous	NA	NA	NA	NA
PW2017T1	chr1	174089408	PW2017tail	colon	sgMsh2	174089408	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	135	0	0	NA	exonic	Olfr429	nonsynonymous SNV	Olfr429:NM_146722:exon1:c.T367C:p.Y123H	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	3	0.8096884	GTA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	174136920	PW2017tail	colon	sgMsh2	174136920	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	392	0	0	NA	exonic	Olfr424	nonsynonymous SNV	Olfr424:NM_146721:exon1:c.A175G:p.M59V	1qH3	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	3	0.9996827	CAT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr1	180893351	PW2017tail	colon	sgMsh2	180893351	C	T	SNV	Mutect2;Vardict	2	0.065	65	0	0	NA	exonic	Lefty2	synonymous SNV	Lefty2:NM_177099:exon1:c.C168T:p.H56H	1qH4	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.177111717	2	9.16E-08	ACG	synonymous	NA	NA	NA	NA
PW2017T1	chr1	182279606	PW2017tail	colon	sgMsh2	182279606	G	A	SNV	Mutect2;Vardict	2	0.044	127	0	0	NA	exonic	Degs1	synonymous SNV	"Degs1:NM_001360783:exon2:c.C87T:p.D29D,Degs1:NM_007853:exon2:c.C195T:p.D65D"	1qH5	chr1-4839315-194959842	2	2	0	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.119891008	3	0.8880178	AGT	synonymous	NA	NA	NA	NA
PW2017T1	chr10	4355381	PW2017tail	colon	sgMsh2	4355382	AG	-	Deletion	Strelka2;Vardict	2	0.1	90	0	0	NA	exonic	Akap12	frameshift deletion	Akap12:NM_031185:exon3:c.2505_2506del:p.K839Afs*22	10qA1	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	TAG	frameshift	AG	11	AGAGAGAGAGA	-2
PW2017T1	chr10	4374600	PW2017tail	colon	sgMsh2	4374600	T	C	SNV	Mutect2;Vardict	2	0.03	268	0	0	NA	exonic	Zbtb2	nonsynonymous SNV	"Zbtb2:NM_001033466:exon2:c.A143G:p.Y48C,Zbtb2:NM_001359811:exon2:c.A143G:p.Y48C"	10qA1	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	8814445	PW2017tail	colon	sgMsh2	8814445	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	116	0	0	NA	exonic	Sash1	nonsynonymous SNV	Sash1:NM_175155:exon3:c.G277A:p.A93T	10qA1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.160762943	2	0.5101265	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	14766811	PW2017tail	colon	sgMsh2	14766811	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	160	0	0	NA	exonic	Nmbr	nonsynonymous SNV	Nmbr:NM_008703:exon2:c.G557A:p.R186H	10qA2	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.130790191	3	0.8684134	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	18011719	PW2017tail	colon	sgMsh2	18011719	T	C	SNV	Mutect2;Vardict	2	0.048	255	0	0	NA	exonic	Abracl	synonymous SNV	"Abracl:NM_001359559:exon3:c.A159G:p.A53A,Abracl:NM_001359560:exon3:c.A159G:p.A53A,Abracl:NM_028440:exon3:c.A159G:p.A53A"	10qA3	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.130790191	3	0.9518798	TTG	synonymous	NA	NA	NA	NA
PW2017T1	chr10	21998740	PW2017tail	colon	sgMsh2	21998740	C	T	SNV	Mutect2;Vardict	2	0.125	35	0	0	NA	exonic	Sgk1	synonymous SNV	"Sgk1:NM_001161847:exon12:c.C1128T:p.D376D,Sgk1:NM_001161848:exon12:c.C1128T:p.D376D,Sgk1:NM_001161849:exon12:c.C1167T:p.D389D,Sgk1:NM_001161850:exon12:c.C1251T:p.D417D,Sgk1:NM_011361:exon12:c.C1209T:p.D403D,Sgk1:NM_001161845:exon14:c.C1488T:p.D496D"	10qA3	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.340599455	2	0.9256651	ACA	synonymous	NA	NA	NA	NA
PW2017T1	chr10	24902131	PW2017tail	colon	sgMsh2	24902131	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	56	0	0	NA	exonic	Med23	nonsynonymous SNV	"Med23:NM_027347:exon19:c.G2358T:p.Q786H,Med23:NM_001166416:exon20:c.G2376T:p.Q792H"	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	2	0.7424141	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	26271445	PW2017tail	colon	sgMsh2	26271445	T	-	Deletion	Mutect2;Vardict	2	0.04	233	0	0	NA	exonic	Samd3	frameshift deletion	Samd3:NM_001115154:exon10:c.1223delT:p.F409Lfs*10	10qA4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr10	62839937	PW2017tail	colon	sgMsh2	62839937	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	156	0	0	NA	exonic	Tet1	nonsynonymous SNV	Tet1:NM_001253857:exon4:c.G2359T:p.D787Y	10qB4	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.114441417	3	0.9469366	TCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	76603662	PW2017tail	colon	sgMsh2	76603662	T	C	SNV	Mutect2;Vardict	2	0.046	87	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon26:c.A2267G:p.D756G,Col6a2:NM_146007:exon26:c.A2267G:p.D756G"	10qC1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.125340599	3	0.7750402	GTC	nonsynonymous	TCA	8	TCATCATC	NA
PW2017T1	chr10	77312506	PW2017tail	colon	sgMsh2	77312506	T	-	Deletion	Strelka2;Vardict	2	0.044	91	0	0	NA	exonic	Adarb1	frameshift deletion	"Adarb1:NM_001024837:exon7:c.1268delA:p.K423Sfs*13,Adarb1:NM_130895:exon7:c.1268delA:p.K423Sfs*13,Adarb1:NM_001024838:exon8:c.1250delA:p.K417Sfs*13"	10qC1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.119891008	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr10	78917577	PW2017tail	colon	sgMsh2	78917577	C	A	SNV	Mutect2;Vardict	2	0.055	378	0	0	NA	exonic	Olfr1354	nonsynonymous SNV	Olfr1354:NM_001199840:exon1:c.C736A:p.L246I	10qC1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	3	0.8120357	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	99758162	PW2017tail	colon	sgMsh2	99758162	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	292	0	0	NA	exonic	Csl	nonsynonymous SNV	Csl:NM_027945:exon1:c.A1040G:p.H347R	10qD1	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	3	0.9995165	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	121611565	PW2017tail	colon	sgMsh2	121611565	G	A	SNV	Mutect2;Vardict	2	0.028	200	0	0	NA	exonic	Xpot	nonsynonymous SNV	"Xpot:NM_001081056:exon9:c.C991T:p.L331F,Xpot:NM_001359618:exon9:c.C991T:p.L331F"	10qD2	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	3	0.998885	AGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr10	129647805	PW2017tail	colon	sgMsh2	129647805	C	T	SNV	Mutect2;Vardict	2	0.023	224	0	0	NA	exonic	Olfr799	nonsynonymous SNV	Olfr799:NM_146927:exon1:c.C676T:p.P226S	10qD3	chr10-4403017-130453386	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.0626703	3	0.9998573	TCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr11	43443276	PW2017tail	colon	sgMsh2	43443276	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	86	0	0	NA	exonic	Slu7	synonymous SNV	"Slu7:NM_198936:exon12:c.C1128T:p.Y376Y,Slu7:NM_148673:exon13:c.C1128T:p.Y376Y"	11qB1.1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	3	0.718348	ACG	synonymous	NA	NA	NA	NA
PW2017T1	chr11	50984876	PW2017tail	colon	sgMsh2	50984876	C	A	SNV	Mutect2;Vardict	2	0.044	316	0	0	NA	exonic	Olfr1377	synonymous SNV	Olfr1377:NM_146911:exon1:c.C174A:p.P58P	11qB1.3	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.119891008	3	0.9939121	CCA	synonymous	NA	NA	NA	NA
PW2017T1	chr11	54493229	PW2017tail	colon	sgMsh2	54493229	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	149	0	0	NA	exonic	Fnip1	nonsynonymous SNV	Fnip1:NM_173753:exon10:c.T951G:p.S317R	11qB1.3	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	3	0.9562935	GTT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr11	58665683	PW2017tail	colon	sgMsh2	58665683	C	G	SNV	Mutect2;Vardict	2	0.028	203	0	0	NA	exonic	Olfr322	synonymous SNV	Olfr322:NM_207693:exon1:c.C123G:p.G41G	11qB1.3	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	3	0.9989924	GCA	synonymous	NA	NA	NA	NA
PW2017T1	chr11	67660107	PW2017tail	colon	sgMsh2	67660107	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	182	0	0	NA	exonic	Gas7	nonsynonymous SNV	"Gas7:NM_001277080:exon5:c.G245T:p.W82L,Gas7:NM_001109657:exon6:c.G434T:p.W145L,Gas7:NM_001277079:exon6:c.G422T:p.W141L,Gas7:NM_008088:exon6:c.G449T:p.W150L"	11qB3	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.247956403	2	0.9985895	TGG	nonsynonymous	GGTA	8	GGTAGGTA	NA
PW2017T1	chr11	73888081	PW2017tail	colon	sgMsh2	73888081	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	350	0	0	NA	exonic	Olfr394	nonsynonymous SNV	Olfr394:NM_147007:exon1:c.C290T:p.A97V	11qB4	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	3	0.999767	TGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr11	77719411	PW2017tail	colon	sgMsh2	77719411	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	241	0	0	NA	exonic	Cryba1	nonsynonymous SNV	Cryba1:NM_001313933:exon4:c.T335C:p.V112A	11qB5	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	3	0.9947024	AAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr11	95750134	PW2017tail	colon	sgMsh2	95750134	A	-	Deletion	Mutect2;Vardict	2	0.062	140	0	0	NA	exonic	Zfp652	frameshift deletion	Zfp652:NM_201609:exon1:c.884delA:p.N297Tfs*106	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr11	96344351	PW2017tail	colon	sgMsh2	96344351	C	-	Deletion	Strelka2;Vardict	2	0.1429	28	0	0	NA	exonic	Hoxb3	frameshift deletion	"Hoxb3:NM_010458:exon1:c.103delC:p.Q38Rfs*36,Hoxb3:NM_001079869:exon3:c.103delC:p.Q38Rfs*36"	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.389373297	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T1	chr11	97670305	PW2017tail	colon	sgMsh2	97670305	C	-	Deletion	Strelka2;Vardict	2	0.0978	92	0	0	NA	exonic	Mllt6	frameshift deletion	Mllt6:NM_139311:exon8:c.818delC:p.S276Afs*46	11qD	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.266485014	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
PW2017T1	chr11	103225434	PW2017tail	colon	sgMsh2	103225434	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	62	0	0	NA	exonic	Map3k14	nonsynonymous SNV	Map3k14:NM_016896:exon12:c.C2167T:p.P723S	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.302452316	2	0.9730574	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr11	109585116	PW2017tail	colon	sgMsh2	109585116	T	C	SNV	Mutect2;Vardict	2	0.039	111	0	0	NA	exonic	Wipi1	synonymous SNV	Wipi1:NM_145940:exon5:c.A507G:p.V169V	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	3	0.9192226	GTA	synonymous	NA	NA	NA	NA
PW2017T1	chr11	110146916	PW2017tail	colon	sgMsh2	110146916	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	145	0	0	NA	exonic	Abca9	frameshift deletion	Abca9:NM_147220:exon12:c.1607delC:p.P536Lfs*50	11qE1	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr11	119442475	PW2017tail	colon	sgMsh2	119442475	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	97	0	0	NA	exonic	Rnf213	frameshift deletion	Rnf213:NM_001040005:exon29:c.8512delA:p.V2840Lfs*10	11qE2	chr11-3133205-121580267	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.463215259	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr12	31539192	PW2017tail	colon	sgMsh2	31539192	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.085	95	0	0	NA	exonic	Slc26a4	frameshift deletion	Slc26a4:NM_011867:exon10:c.1254delG:p.K419Rfs*10	12qA2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.231607629	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2017T1	chr12	51881222	PW2017tail	colon	sgMsh2	51881222	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	128	0	0	NA	exonic	Heatr5a	synonymous SNV	Heatr5a:NM_177171:exon34:c.C5490T:p.A1830A	12qB3	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.198910082	2	0.8850968	CGG	synonymous	NA	NA	NA	NA
PW2017T1	chr12	65130375	PW2017tail	colon	sgMsh2	65130375	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	115	0	0	NA	exonic	Fancm	nonsynonymous SNV	"Fancm:NM_001364447:exon23:c.A3769G:p.N1257D,Fancm:NM_178912:exon23:c.A5992G:p.N1998D"	12qC1	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	3	0.7754121	AAA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr12	65136811	PW2017tail	colon	sgMsh2	65136811	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.118	77	0	0	NA	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon12:c.2786delA:p.N929Mfs*40	12qC1	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr12	69760134	PW2017tail	colon	sgMsh2	69760134	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	49	0	0	NA	exonic	Cdkl1	synonymous SNV	Cdkl1:NM_183294:exon4:c.G327A:p.Q109Q	12qC2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.340599455	2	0.9722426	TCT	synonymous	NA	NA	NA	NA
PW2017T1	chr12	70056734	PW2017tail	colon	sgMsh2	70056734	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	101	0	0	NA	exonic	Nin	nonsynonymous SNV	"Nin:NM_001081453:exon6:c.A731G:p.Y244C,Nin:NM_001286079:exon7:c.A731G:p.Y244C,Nin:NM_001286080:exon8:c.A731G:p.Y244C,Nin:NM_008697:exon8:c.A731G:p.Y244C"	12qC2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	2	0.6935179	ATA	nonsynonymous	A	5	AAAAA	NA
PW2017T1	chr12	76311940	PW2017tail	colon	sgMsh2	76311940	C	T	SNV	Mutect2;Vardict	2	0.1	43	0	0	NA	exonic	Mthfd1	nonsynonymous SNV	Mthfd1:NM_138745:exon24:c.C2414T:p.A805V	12qC3	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.272479564	2	0.8754938	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr12	80662524	PW2017tail	colon	sgMsh2	80662524	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	160	0	0	NA	exonic	Slc39a9	synonymous SNV	Slc39a9:NM_026244:exon2:c.C151T:p.L51L	12qC3	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	3	0.7305256	ACT	synonymous	NA	NA	NA	NA
PW2017T1	chr12	116233327	PW2017tail	colon	sgMsh2	116233327	T	-	Deletion	Strelka2;Vardict	2	0.053	132	0	0	NA	exonic	Wdr60	frameshift deletion	Wdr60:NM_146039:exon9:c.1409delA:p.N470Ifs*22	12qF2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW2017T1	chr12	118043800	PW2017tail	colon	sgMsh2	118043800	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	153	0	0	NA	exonic	Dnah11	stopgain	Dnah11:NM_010060:exon39:c.C6442T:p.R2148X	12qF2	chr12-3236683-118301289	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	3	0.6490841	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	11595542	PW2017tail	colon	sgMsh2	11595542	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.076	114	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon90:c.G12397A:p.G4133S	13qA1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	2	0.8997528	CCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	21786960	PW2017tail	colon	sgMsh2	21786960	C	T	SNV	Mutect2;Vardict	2	0.028	180	0	0	NA	exonic	H2ac22	nonsynonymous SNV	H2ac22:NM_178184:exon1:c.G259A:p.A87T	13qA3.1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	3	0.9978103	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	52623265	PW2017tail	colon	sgMsh2	52623265	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	176	0	0	NA	exonic	Syk	nonsynonymous SNV	"Syk:NM_001198977:exon6:c.G817A:p.A273T,Syk:NM_011518:exon6:c.G817A:p.A273T"	13qA5	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	3	0.9345693	TGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	64921942	PW2017tail	colon	sgMsh2	64921942	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	124	0	0	NA	exonic	Spata31	nonsynonymous SNV	Spata31:NM_030047:exon3:c.A1903G:p.R635G	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	3	0.8681541	TAG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	65152523	PW2017tail	colon	sgMsh2	65152523	T	-	Deletion	Strelka2;Vardict	2	0.1073	233	0	0	NA	exonic	Olfr466	frameshift deletion	Olfr466:NM_146819:exon1:c.298delT:p.L102Cfs*30	13qB3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.292370572	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW2017T1	chr13	69704141	PW2017tail	colon	sgMsh2	69704141	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	127	0	0	NA	exonic	Ube2ql1	nonsynonymous SNV	Ube2ql1:NM_001145162:exon2:c.A816C:p.K272N	13qC1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	3	0.6898624	TTT	nonsynonymous	T	5	TTTTT	NA
PW2017T1	chr13	70614986	PW2017tail	colon	sgMsh2	70614986	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	185	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon10:c.T548C:p.L183S	13qC1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.111716621	3	0.9738167	CAA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	73562312	PW2017tail	colon	sgMsh2	73562312	T	C	SNV	Mutect2;Vardict	2	0.044	103	0	0	NA	exonic	Slc6a3	nonsynonymous SNV	Slc6a3:NM_010020:exon8:c.T1040C:p.I347T	13qC1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.119891008	3	0.8437717	ATC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	77125296	PW2017tail	colon	sgMsh2	77125296	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.027	167	0	0	NA	exonic	Slf1	nonsynonymous SNV	Slf1:NM_134071:exon4:c.G365A:p.G122E	13qC1	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.073569482	3	0.9971799	CCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr13	92774684	PW2017tail	colon	sgMsh2	92774684	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.111	50	0	0	NA	exonic	Thbs4	synonymous SNV	Thbs4:NM_011582:exon7:c.T990C:p.D330D	13qC3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.302452316	2	0.9470057	CAT	synonymous	NA	NA	NA	NA
PW2017T1	chr13	117873910	PW2017tail	colon	sgMsh2	117873911	TA	-	Deletion	Mutect2;Vardict	2	0.038	122	0	0	NA	exonic	Hcn1	frameshift deletion	Hcn1:NM_010408:exon4:c.1023_1024del:p.M342Efs*17	13qD2.3	chr13-4065516-119495179	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	NA	NA	CTA	frameshift	NA	NA	NA	-2
PW2017T1	chr14	8247992	PW2017tail	colon	sgMsh2	8247992	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	54	0	0	NA	exonic	Acox2	nonsynonymous SNV	"Acox2:NM_001161667:exon10:c.C1289T:p.A430V,Acox2:NM_053115:exon10:c.C1289T:p.A430V"	14qA1	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.354223433	2	0.9849273	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr14	25662987	PW2017tail	colon	sgMsh2	25662987	C	-	Deletion	Mutect2;Vardict	2	0.042	163	0	0	NA	exonic	Zmiz1	frameshift deletion	"Zmiz1:NM_001310666:exon24:c.3141delC:p.D1050Tfs*83,Zmiz1:NM_183208:exon24:c.3159delC:p.D1056Tfs*83"	14qA3	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.114441417	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T1	chr14	50034983	PW2017tail	colon	sgMsh2	50034983	A	G	SNV	Mutect2;Vardict	2	0.021	414	0	0	NA	exonic	Olfr725	nonsynonymous SNV	Olfr725:NM_146317:exon1:c.T419C:p.V140A	14qC1	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.057220708	3	3.31E-08	CAC	nonsynonymous	AC	8	ACACACAC	NA
PW2017T1	chr14	50618289	PW2017tail	colon	sgMsh2	50618289	C	T	SNV	Mutect2;Vardict	2	0.031	325	0	0	NA	exonic	Olfr744	synonymous SNV	Olfr744:NM_001011738:exon1:c.C66T:p.P22P	14qC1	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.084468665	3	0.9999517	CCT	synonymous	NA	NA	NA	NA
PW2017T1	chr14	50680936	PW2017tail	colon	sgMsh2	50680936	G	T	SNV	Mutect2;Vardict	2	0.028	318	0	0	NA	exonic	Olfr747	synonymous SNV	Olfr747:NM_207156:exon1:c.C697A:p.R233R	14qC1	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.076294278	3	0.9999793	CGG	synonymous	NA	NA	NA	NA
PW2017T1	chr14	111679821	PW2017tail	colon	sgMsh2	111679821	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.117	120	0	0	NA	exonic	Slitrk5	synonymous SNV	"Slitrk5:NM_001378768:exon2:c.C951T:p.Y317Y,Slitrk5:NM_001378769:exon2:c.C876T:p.Y292Y,Slitrk5:NM_001378770:exon2:c.C876T:p.Y292Y,Slitrk5:NM_198865:exon2:c.C876T:p.Y292Y"	14qE4	chr14-3072210-123592557	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.31880109	2	0.9995825	ACG	synonymous	NA	NA	NA	NA
PW2017T1	chr15	18985149	PW2017tail	colon	sgMsh2	18985149	A	-	Deletion	Mutect2;Vardict	2	0.035	185	0	0	NA	exonic	Cdh10	frameshift deletion	"Cdh10:NM_001316758:exon6:c.898delA:p.N301Mfs*19,Cdh10:NM_009865:exon6:c.898delA:p.N301Mfs*19"	15qA2	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr15	25781853	PW2017tail	colon	sgMsh2	25781853	G	A	SNV	Mutect2;Vardict	2	0.118	42	0	0	NA	exonic	Myo10	nonsynonymous SNV	"Myo10:NM_001353142:exon5:c.G1195A:p.A399T,Myo10:NM_001353141:exon7:c.G1507A:p.A503T,Myo10:NM_019472:exon25:c.G3433A:p.A1145T"	15qB1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	2	0.9389065	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr15	25964325	PW2017tail	colon	sgMsh2	25964325	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	202	0	0	NA	exonic	Retreg1	nonsynonymous SNV	"Retreg1:NM_001277315:exon2:c.T137C:p.L46P,Retreg1:NM_001277316:exon2:c.T161C:p.L54P,Retreg1:NM_001277317:exon2:c.T107C:p.L36P,Retreg1:NM_001277318:exon2:c.T35C:p.L12P,Retreg1:NM_025459:exon3:c.T137C:p.L46P,Retreg1:NM_001034851:exon4:c.T509C:p.L170P"	15qB1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.283378747	2	0.9999631	CTT	nonsynonymous	T	5	TTTTT	NA
PW2017T1	chr15	52721070	PW2017tail	colon	sgMsh2	52721070	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	207	0	0	NA	exonic	Med30	nonsynonymous SNV	Med30:NM_027212:exon3:c.G383A:p.R128Q	15qC	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	3	0.9944734	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr15	57245003	PW2017tail	colon	sgMsh2	57245003	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	162	0	0	NA	exonic	Slc22a22	stopgain	"Slc22a22:NM_001357930:exon10:c.1415delT:p.L472fs*0,Slc22a22:NM_172378:exon11:c.1415delT:p.L472fs*0"	15qD1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.329700272	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
PW2017T1	chr15	76006343	PW2017tail	colon	sgMsh2	76006343	G	A	SNV	Mutect2;Vardict	2	0.111	35	0	0	NA	exonic	Fam83h	stopgain	"Fam83h:NM_001168253:exon2:c.C205T:p.Q69X,Fam83h:NM_134087:exon2:c.C205T:p.Q69X"	15qD3	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.302452316	2	0.8810471	TGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr15	76539984	PW2017tail	colon	sgMsh2	76539984	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.074	87	0	0	NA	exonic	Slc52a2	frameshift deletion	Slc52a2:NM_029643:exon3:c.421delC:p.L144Yfs*9	15qD3	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.201634877	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T1	chr15	81640124	PW2017tail	colon	sgMsh2	81640124	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	162	0	0	NA	exonic	Ep300	frameshift deletion	Ep300:NM_177821:exon25:c.4152delC:p.P1386Lfs*31	15qE1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T1	chr15	94351598	PW2017tail	colon	sgMsh2	94351598	T	-	Deletion	Strelka2;Vardict	2	0.1375	80	0	0	NA	exonic	Adamts20	frameshift deletion	Adamts20:NM_001164786:exon10:c.1537delA:p.T513Lfs*37	15qE3	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.374659401	NA	NA	GTT	frameshift	T	10	TTTTTTTTTT	-1
PW2017T1	chr15	101039981	PW2017tail	colon	sgMsh2	101039981	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	139	0	0	NA	exonic	Scn8a	nonsynonymous SNV	"Scn8a:NM_011323:exon26:c.T5230G:p.F1744V,Scn8a:NM_001077499:exon27:c.T5230G:p.F1744V"	15qF1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	2	0.5903205	CTT	nonsynonymous	TCT	11	TCTTCTTCTTC	NA
PW2017T1	chr15	101202988	PW2017tail	colon	sgMsh2	101202988	A	-	Deletion	Strelka2;Vardict	2	0.2198	91	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon6:c.1030delA:p.N346Mfs*21	15qF1	chr15-3280572-103525164	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.598910082	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW2017T1	chr16	5020292	PW2017tail	colon	sgMsh2	5020292	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	80	0	0	NA	exonic	Glyr1	nonsynonymous SNV	"Glyr1:NM_001079814:exon12:c.C1091T:p.A364V,Glyr1:NM_001359747:exon12:c.C866T:p.A289V,Glyr1:NM_001359748:exon12:c.C884T:p.A295V,Glyr1:NM_028720:exon12:c.C1073T:p.A358V"	16qA1	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.326975477	2	0.9956388	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr16	14396365	PW2017tail	colon	sgMsh2	14396365	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	226	0	0	NA	exonic	Abcc1	synonymous SNV	Abcc1:NM_008576:exon5:c.C504T:p.D168D	16qA1	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	3	0.967819	ACG	synonymous	NA	NA	NA	NA
PW2017T1	chr16	17895431	PW2017tail	colon	sgMsh2	17895431	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	154	0	0	NA	exonic	Tssk1	nonsynonymous SNV	Tssk1:NM_009435:exon1:c.C1079A:p.P360H	16qA3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	3	0.9827777	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr16	19624222	PW2017tail	colon	sgMsh2	19624222	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	431	0	0	NA	exonic	Olfr171	nonsynonymous SNV	Olfr171:NM_146958:exon1:c.C880T:p.R294W	16qA3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.204359673	2	0.999638	CGA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr16	56730332	PW2017tail	colon	sgMsh2	56730332	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	220	0	0	NA	exonic	Adgrg7	synonymous SNV	Adgrg7:NM_172825:exon15:c.C2016T:p.I672I	16qC1.1	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.207084469	2	0.9862174	CGA	synonymous	GATA	9	GATAGATAG	NA
PW2017T1	chr16	64784922	PW2017tail	colon	sgMsh2	64784922	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.042	173	0	0	NA	exonic	Zfp654	synonymous SNV	Zfp654:NM_001347245:exon8:c.A2916G:p.L972L	16qC1.3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.114441417	3	0.9605177	CTA	synonymous	NA	NA	NA	NA
PW2017T1	chr16	64926560	PW2017tail	colon	sgMsh2	64926560	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	202	0	0	NA	exonic	Htr1f	nonsynonymous SNV	Htr1f:NM_008310:exon3:c.G368A:p.R123H	16qC1.3	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.117166213	3	0.9705617	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr16	73985706	PW2017tail	colon	sgMsh2	73985706	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.122	53	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_175549:exon7:c.C941T:p.P314L,Robo2:NM_001358491:exon8:c.C1022T:p.P341L,Robo2:NM_001358492:exon8:c.C1022T:p.P341L,Robo2:NM_001358493:exon8:c.C1022T:p.P341L,Robo2:NM_001358494:exon8:c.C953T:p.P318L"	16qC3.1	chr16-4687471-96819699	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.332425068	2	0.9756061	TGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr16	97755208	PW2017tail	colon	sgMsh2	97755208	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	101	0	0	NA	exonic	Ripk4	nonsynonymous SNV	Ripk4:NM_023663:exon2:c.C334T:p.P112S	16qC4	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	18583016	PW2017tail	colon	sgMsh2	18583016	G	A	SNV	Mutect2;Vardict	2	0.017	517	0	0	NA	exonic	Vmn2r96	nonsynonymous SNV	"Vmn2r96:NM_001104547:exon2:c.G611A:p.S204N,Vmn2r96:NM_001385081:exon3:c.G1187A:p.S396N"	17qA3.2	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.046321526	3	1.04E-09	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	23761107	PW2017tail	colon	sgMsh2	23761107	C	T	SNV	Mutect2;Vardict	2	0.06	70	0	0	NA	exonic	Flywch1	nonsynonymous SNV	"Flywch1:NM_001357994:exon4:c.G692A:p.R231Q,Flywch1:NM_153791:exon4:c.G692A:p.R231Q,Flywch1:NM_001357993:exon5:c.G692A:p.R231Q"	17qA3.3	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.163487738	2	0.5217745	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	26119521	PW2017tail	colon	sgMsh2	26119521	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	89	0	0	NA	exonic	Pgap6	nonsynonymous SNV	Pgap6:NM_021793:exon9:c.G1556A:p.C519Y	17qA3.3	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.171662125	2	0.6030322	TGC	nonsynonymous	GCTGCA	12	GCTGCAGCTGCA	NA
PW2017T1	chr17	35235698	PW2017tail	colon	sgMsh2	35235698	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	130	0	0	NA	exonic	Nfkbil1	synonymous SNV	Nfkbil1:NM_010909:exon1:c.C9T:p.N3N	17qB1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.307901907	2	0.999613	GGT	synonymous	NA	NA	NA	NA
PW2017T1	chr17	37904093	PW2017tail	colon	sgMsh2	37904093	G	A	SNV	Mutect2;Vardict	2	0.022	409	0	0	NA	exonic	Olfr127	synonymous SNV	Olfr127:NM_146377:exon1:c.G546A:p.P182P	17qB1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.059945504	3	0.9999999	CGC	synonymous	NA	NA	NA	NA
PW2017T1	chr17	46500759	PW2017tail	colon	sgMsh2	46500759	T	C	SNV	Mutect2;Vardict	2	0.064	62	0	0	NA	exonic	Cul9	synonymous SNV	Cul9:NM_001081335:exon41:c.A7542G:p.R2514R	17qC	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.174386921	2	0.5862874	CTC	synonymous	NA	NA	NA	NA
PW2017T1	chr17	49070407	PW2017tail	colon	sgMsh2	49070407	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	181	0	0	NA	exonic	Lrfn2	nonsynonymous SNV	Lrfn2:NM_027452:exon2:c.T515C:p.M172T	17qC	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	3	0.6727345	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	63981544	PW2017tail	colon	sgMsh2	63981544	C	T	SNV	Mutect2;Vardict	2	0.044	94	0	0	NA	exonic	Fer	nonsynonymous SNV	"Fer:NM_008000:exon6:c.C284T:p.A95V,Fer:NM_001286415:exon10:c.C1220T:p.A407V,Fer:NM_001037997:exon11:c.C1394T:p.A465V"	17qE1.1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.119891008	3	0.8238323	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	65430830	PW2017tail	colon	sgMsh2	65430830	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	116	0	0	NA	exonic	Tmem232	nonsynonymous SNV	"Tmem232:NM_001360185:exon9:c.G1132A:p.A378T,Tmem232:NM_001008973:exon11:c.G1234A:p.A412T,Tmem232:NM_001289486:exon11:c.G1231A:p.A411T,Tmem232:NM_001289485:exon12:c.G1234A:p.A412T"	17qE1.1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.223433243	2	0.9529208	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr17	65867753	PW2017tail	colon	sgMsh2	65867753	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	0	0	NA	exonic	Ralbp1	nonsynonymous SNV	"Ralbp1:NM_001198949:exon2:c.C23T:p.P8L,Ralbp1:NM_009067:exon2:c.C23T:p.P8L"	17qE1.1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.474114441	2	0.0985098	CGG	nonsynonymous	G	5	GGGGG	NA
PW2017T1	chr17	67786092	PW2017tail	colon	sgMsh2	67786092	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	106	0	0	NA	exonic	Lama1	synonymous SNV	Lama1:NM_008480:exon36:c.G5124A:p.S1708S	17qE1.1	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.138964578	3	0.7128707	CGT	synonymous	NA	NA	NA	NA
PW2017T1	chr17	87718639	PW2017tail	colon	sgMsh2	87718639	A	-	Deletion	Strelka2;Vardict	2	0.2051	39	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2044delA:p.T682Pfs*2	17qE4	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.558855586	NA	NA	GAC	frameshift	NA	NA	NA	-1
PW2017T1	chr17	87718641	PW2017tail	colon	sgMsh2	87718644	CGGG	-	Deletion	Strelka2;Vardict	2	0.2439	41	0	0	NA	exonic	Msh2	frameshift deletion	Msh2:NM_008628:exon13:c.2046_2049del:p.G683fs*0	17qE4	chr17-3170973-94747584	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.664577657	NA	NA	CCG	frameshift	NA	NA	NA	-4
PW2017T1	chr18	9859018	PW2017tail	colon	sgMsh2	9859018	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	95	0	0	NA	exonic	Colec12	synonymous SNV	Colec12:NM_130449:exon6:c.A1800C:p.P600P	18qA1	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.27520436	2	0.9886111	CAG	synonymous	NA	NA	NA	NA
PW2017T1	chr18	14726540	PW2017tail	colon	sgMsh2	14726540	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.102	126	0	0	NA	exonic	Psma8	nonsynonymous SNV	"Psma8:NM_001163609:exon3:c.C266T:p.A89V,Psma8:NM_001360823:exon3:c.C266T:p.A89V"	18qA1	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.277929155	2	0.9977007	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr18	20283769	PW2017tail	colon	sgMsh2	20283769	-	C	Insertion	Mutect2;Vardict	2	0.023	682	0	0	NA	exonic	Dsg1c	stoploss	Dsg1c:NM_181680:exon15:c.2727dupC:p.*912delinsLSYQVPTT*	18qA2	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.0626703	NA	NA	ATC	nonsynonymous	C	5	CCCCC	1
PW2017T1	chr18	34298736	PW2017tail	colon	sgMsh2	34298737	AC	CA	DBS	Mutect2;Vardict	2	0.119	125	0	0	NA	exonic	Apc	nonframeshift substitution	"Apc:NM_001360979:exon10:c.1064_1065CA:p.Y355S,Apc:NM_001360980:exon10:c.1241_1242CA:p.Y414S,Apc:NM_007462:exon10:c.1241_1242CA:p.Y414S"	18qB1	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.324250681	NA	NA	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr18	34312293	PW2017tail	colon	sgMsh2	34312320	GCCATCCCTTCACGTTAGGAAACAGAAA	-	Deletion	Strelka2;Vardict	2	0.1574	108	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2064_2091del:p.P689Lfs*1,Apc:NM_007462:exon16:c.2241_2268del:p.P748Lfs*1,Apc:NM_001360980:exon17:c.2295_2322del:p.P766Lfs*1"	18qB1	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.428882834	NA	NA	TGC	frameshift	NA	NA	NA	-28
PW2017T1	chr18	37414065	PW2017tail	colon	sgMsh2	37414065	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.061	256	0	0	NA	exonic	Pcdhb10	synonymous SNV	Pcdhb10:NM_053135:exon1:c.C2193G:p.G731G	18qB3	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	2	0.6692751	GCC	synonymous	NA	NA	NA	NA
PW2017T1	chr18	37890957	PW2017tail	colon	sgMsh2	37890957	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.096	52	0	0	NA	exonic	Diaph1	synonymous SNV	"Diaph1:NM_007858:exon15:c.T1827G:p.T609T,Diaph1:NM_001305980:exon16:c.T1854G:p.T618T,Diaph1:NM_001305981:exon17:c.T1722G:p.T574T"	18qB3	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.261580381	2	0.8944005	AAG	synonymous	NA	NA	NA	NA
PW2017T1	chr18	52868618	PW2017tail	colon	sgMsh2	52868618	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	96	0	0	NA	exonic	Sncaip	synonymous SNV	"Sncaip:NM_001199151:exon4:c.C210T:p.Y70Y,Sncaip:NM_001199153:exon4:c.C210T:p.Y70Y,Sncaip:NM_001199154:exon4:c.C210T:p.Y70Y,Sncaip:NM_026408:exon4:c.C210T:p.Y70Y"	18qD1	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.188010899	2	0.7492463	ACA	synonymous	NA	NA	NA	NA
PW2017T1	chr18	59048940	PW2017tail	colon	sgMsh2	59048940	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	140	0	0	NA	exonic	Adamts19	synonymous SNV	Adamts19:NM_175506:exon22:c.T3450C:p.I1150I	18qD3	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.128065395	3	0.8595552	TTA	synonymous	NA	NA	NA	NA
PW2017T1	chr18	80971844	PW2017tail	colon	sgMsh2	80971844	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.105	60	0	0	NA	exonic	Sall3	frameshift deletion	"Sall3:NM_001369133:exon2:c.2868delC:p.G957Afs*9,Sall3:NM_178280:exon2:c.2868delC:p.G957Afs*9"	18qE3	chr18-3281580-89104078	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.286103542	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr19	5368639	PW2017tail	colon	sgMsh2	5368639	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	272	0	0	NA	exonic	Eif1ad	synonymous SNV	Eif1ad:NM_027236:exon4:c.T219C:p.P73P	19qA	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.223433243	2	0.9991788	CTA	synonymous	NA	NA	NA	NA
PW2017T1	chr19	5498406	PW2017tail	colon	sgMsh2	5498406	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	88	0	0	NA	exonic	Snx32	nonsynonymous SNV	"Snx32:NM_001024560:exon3:c.C245G:p.A82G,Snx32:NM_001362042:exon3:c.C245G:p.A82G"	19qA	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.277929155	2	0.985653	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr19	12626714	PW2017tail	colon	sgMsh2	12626714	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	150	0	0	NA	exonic	Gm4952	synonymous SNV	"Gm4952:NM_001013762:exon6:c.T489C:p.I163I,Gm4952:NM_001167907:exon6:c.T489C:p.I163I"	19qA	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.395095368	2	0.9995963	GTG	synonymous	NA	NA	NA	NA
PW2017T1	chr19	13479307	PW2017tail	colon	sgMsh2	13479307	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.064	261	0	0	NA	exonic	Olfr1475	frameshift deletion	Olfr1475:NM_146301:exon1:c.890delA:p.N297Mfs*8	19qA	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.174386921	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr19	24261943	PW2017tail	colon	sgMsh2	24261943	A	G	SNV	Mutect2;Vardict	2	0.084	115	0	0	NA	exonic	Fxn	nonsynonymous SNV	Fxn:NM_008044:exon5:c.T584C:p.L195P	19qB	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	2	0.9622117	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr19	40574283	PW2017tail	colon	sgMsh2	40574283	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	exonic	Aldh18a1	synonymous SNV	"Aldh18a1:NM_019698:exon7:c.C645T:p.I215I,Aldh18a1:NM_153554:exon7:c.C645T:p.I215I"	19qC3	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.160762943	2	0.510296	CGA	synonymous	NA	NA	NA	NA
PW2017T1	chr19	57059116	PW2017tail	colon	sgMsh2	57059116	G	-	Deletion	Mutect2;Vardict	2	0.11	43	0	0	NA	exonic	Ablim1	frameshift deletion	"Ablim1:NM_001103178:exon10:c.714delC:p.F239Sfs*30,Ablim1:NM_178688:exon15:c.1662delC:p.F555Sfs*30"	19qD2	chr19-3804329-61225035	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.29972752	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr2	4645601	PW2017tail	colon	sgMsh2	4645601	C	T	SNV	Mutect2;Vardict	2	0.024	291	0	0	NA	exonic	Prpf18	nonsynonymous SNV	"Prpf18:NM_026045:exon3:c.G217A:p.E73K,Prpf18:NM_001356451:exon4:c.G244A:p.E82K"	2qA1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.065395095	3	0.9999859	TCC	nonsynonymous	T	5	TTTTT	NA
PW2017T1	chr2	30089980	PW2017tail	colon	sgMsh2	30089980	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	108	0	0	NA	exonic	Pkn3	nonsynonymous SNV	Pkn3:NM_153805:exon19:c.A2234C:p.E745A	2qB	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.258855586	2	0.9873714	GAG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	30091689	PW2017tail	colon	sgMsh2	30091689	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	38	0	0	NA	exonic	Zdhhc12	synonymous SNV	"Zdhhc12:NM_001037762:exon4:c.C460T:p.L154L,Zdhhc12:NM_025428:exon4:c.C502T:p.L168L"	2qB	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.441416894	2	0.9549748	AGC	synonymous	NA	NA	NA	NA
PW2017T1	chr2	48898564	PW2017tail	colon	sgMsh2	48898564	A	-	Deletion	Strelka2;Vardict	2	0.0838	179	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228337875	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2017T1	chr2	52082746	PW2017tail	colon	sgMsh2	52082746	A	-	Deletion	Mutect2;Vardict	2	0.06	144	0	0	NA	exonic	Rif1	frameshift deletion	"Rif1:NM_001355414:exon9:c.889delA:p.I299Sfs*8,Rif1:NM_001355415:exon9:c.868delA:p.I292Sfs*8,Rif1:NM_175238:exon9:c.889delA:p.I299Sfs*8"	2qC1.1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.163487738	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr2	52149604	PW2017tail	colon	sgMsh2	52149604	G	A	SNV	Mutect2;Vardict	2	0.04	149	0	0	NA	exonic	Neb	nonsynonymous SNV	Neb:NM_010889:exon152:c.C20734T:p.R6912W	2qC1.1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.108991826	3	0.9562935	CGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	69507773	PW2017tail	colon	sgMsh2	69507773	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	168	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon24:c.C3662T:p.A1221V	2qC2	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	2	0.7995792	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	76876935	PW2017tail	colon	sgMsh2	76876935	G	A	SNV	Mutect2;Vardict	2	0.038	149	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_011652:exon94:c.C24371T:p.T8124I,Ttn:NM_001385708:exon96:c.C27428T:p.T9143I"	2qC3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	3	0.9682312	AGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	76946167	PW2017tail	colon	sgMsh2	76946167	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	167	0	0	NA	exonic	Ttn	synonymous SNV	"Ttn:NM_028004:exon26:c.G4644A:p.V1548V,Ttn:NM_001385708:exon27:c.G4782A:p.V1594V,Ttn:NM_011652:exon27:c.G4782A:p.V1594V"	2qC3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.177111717	2	0.7666473	ACA	synonymous	NA	NA	NA	NA
PW2017T1	chr2	85799737	PW2017tail	colon	sgMsh2	85799737	A	-	Deletion	Mutect2;Vardict	2	0.058	159	0	0	NA	exonic	Olfr1016	frameshift deletion	Olfr1016:NM_001011758:exon1:c.532delT:p.C178Vfs*6	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr2	86130951	PW2017tail	colon	sgMsh2	86130951	G	T	SNV	Mutect2;Vardict	2	0.041	404	0	0	NA	exonic	Olfr1039	synonymous SNV	Olfr1039:NM_001011784:exon1:c.C711A:p.A237A	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.111716621	3	0.999611	AGG	synonymous	NA	NA	NA	NA
PW2017T1	chr2	86423404	PW2017tail	colon	sgMsh2	86423404	T	-	Deletion	Mutect2;Vardict	2	0.035	359	0	0	NA	exonic	Olfr1062	frameshift deletion	Olfr1062:NM_147078:exon1:c.271delA:p.T91Pfs*26	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr2	87149751	PW2017tail	colon	sgMsh2	87149751	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.182	80	0	0	NA	exonic	Olfr1111	frameshift deletion	Olfr1111:NM_146593:exon1:c.909delA:p.K303Nfs*11	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.495912807	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr2	87418570	PW2017tail	colon	sgMsh2	87418570	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	235	0	0	NA	exonic	Olfr1123	nonsynonymous SNV	Olfr1123:NM_146350:exon1:c.A521G:p.Y174C	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.171662125	2	0.7625402	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	88034600	PW2017tail	colon	sgMsh2	88034600	A	-	Deletion	Mutect2;Vardict	2	0.084	86	0	0	NA	exonic	Olfr73	frameshift deletion	Olfr73:NM_054090:exon1:c.538delT:p.C180Vfs*47	2qD	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr2	89097028	PW2017tail	colon	sgMsh2	89097028	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.039	194	0	0	NA	exonic	Olfr1220	frameshift deletion	Olfr1220:NM_146900:exon1:c.898delA:p.M300Cfs*17	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr2	89170841	PW2017tail	colon	sgMsh2	89170841	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	353	0	0	NA	exonic	Olfr1225	nonsynonymous SNV	Olfr1225:NM_146891:exon1:c.G370A:p.A124T	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.081743869	3	0.9999861	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	89721244	PW2017tail	colon	sgMsh2	89721244	T	A	SNV	Mutect2;Vardict	2	0.023	247	0	0	NA	exonic	Olfr1252	nonsynonymous SNV	Olfr1252:NM_207568:exon1:c.A866T:p.N289I	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.0626703	3	0.9999423	GTT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	89721300	PW2017tail	colon	sgMsh2	89721300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	258	0	0	NA	exonic	Olfr1252	synonymous SNV	Olfr1252:NM_207568:exon1:c.T810C:p.T270T	2qE1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.079019074	3	0.9997906	CAG	synonymous	NA	NA	NA	NA
PW2017T1	chr2	111754341	PW2017tail	colon	sgMsh2	111754341	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.061	191	0	0	NA	exonic	Olfr1301	frameshift deletion	Olfr1301:NM_146887:exon1:c.91delT:p.L32Wfs*16	2qE3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T1	chr2	148871965	PW2017tail	colon	sgMsh2	148871965	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	172	0	0	NA	exonic	Cst3	nonsynonymous SNV	Cst3:NM_009976:exon3:c.G418A:p.A140T	2qG3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	2	0.6132704	GCA	nonsynonymous	T	5	TTTTT	NA
PW2017T1	chr2	153399446	PW2017tail	colon	sgMsh2	153399446	G	-	Deletion	Strelka2;Vardict	2	0.1667	66	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.454223433	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW2017T1	chr2	160752122	PW2017tail	colon	sgMsh2	160752122	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	124	0	0	NA	exonic	Plcg1	nonsynonymous SNV	Plcg1:NM_021280:exon11:c.T926G:p.V309G	2qH2	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.19346049	2	0.8456395	GTG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr2	165408849	PW2017tail	colon	sgMsh2	165408849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	112	0	0	NA	exonic	Slc13a3	synonymous SNV	Slc13a3:NM_054055:exon12:c.T1599C:p.S533S	2qH3	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.354223433	2	0.9998189	TAG	synonymous	NA	NA	NA	NA
PW2017T1	chr2	181589851	PW2017tail	colon	sgMsh2	181589851	G	-	Deletion	Mutect2;Vardict	2	0.07	141	0	0	NA	exonic	Zfp512b	frameshift deletion	Zfp512b:NM_001164597:exon5:c.505delC:p.L169Yfs*26	2qH4	chr2-4513773-181815659	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.190735695	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr3	5242010	PW2017tail	colon	sgMsh2	5242010	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	183	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon2:c.C295A:p.H99N,Zfhx4:NM_030708:exon2:c.C295A:p.H99N"	3qA1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.237057221	2	0.9969348	CCA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	10347218	PW2017tail	colon	sgMsh2	10347218	A	-	Deletion	Strelka2;Vardict	2	0.2703	37	0	0	NA	exonic	Zfand1	frameshift deletion	Zfand1:NM_001331014:exon3:c.16delT:p.C6Vfs*3	3qA1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.736512262	NA	NA	CAA	frameshift	A	12	AAAAAAAAAAAA	-1
PW2017T1	chr3	20228867	PW2017tail	colon	sgMsh2	20228867	T	A	SNV	Mutect2;Vardict	2	0.032	181	0	0	NA	exonic	Cpa3	nonsynonymous SNV	Cpa3:NM_007753:exon5:c.A415T:p.M139L	3qA2	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.08719346	3	0.9952762	ATC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	27102490	PW2017tail	colon	sgMsh2	27102490	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	197	0	0	NA	exonic	Ect2	nonsynonymous SNV	"Ect2:NM_001177625:exon22:c.T2320C:p.Y774H,Ect2:NM_001177626:exon22:c.T2320C:p.Y774H,Ect2:NM_007900:exon23:c.T2413C:p.Y805H"	3qA3	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.198910082	2	0.959408	TAC	nonsynonymous	ACAT	9	ACATACATA	NA
PW2017T1	chr3	38455431	PW2017tail	colon	sgMsh2	38455431	A	-	Deletion	Mutect2;Vardict	2	0.064	110	0	0	NA	exonic	Ankrd50	frameshift deletion	Ankrd50:NM_001373894:exon4:c.2897delT:p.L966Wfs*65	3qB	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.174386921	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr3	90262490	PW2017tail	colon	sgMsh2	90262490	C	T	SNV	Mutect2;Vardict	2	0.05	90	0	0	NA	exonic	Crtc2	stopgain	"Crtc2:NM_001357152:exon8:c.C910T:p.R304X,Crtc2:NM_028881:exon12:c.C1447T:p.R483X"	3qF1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.136239782	3	0.7063995	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	108412311	PW2017tail	colon	sgMsh2	108412311	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	92	0	0	NA	exonic	Celsr2	nonsynonymous SNV	"Celsr2:NM_001004177:exon1:c.T3184C:p.Y1062H,Celsr2:NM_017392:exon1:c.T3184C:p.Y1062H"	3qF3	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.198910082	2	0.811022	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	117335459	PW2017tail	colon	sgMsh2	117335459	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	194	0	0	NA	exonic	Plppr4	nonsynonymous SNV	Plppr4:NM_177664:exon2:c.G358A:p.A120T	3qG1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	3	0.5305432	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	123112894	PW2017tail	colon	sgMsh2	123112894	G	-	Deletion	Mutect2;Vardict	2	0.058	164	0	0	NA	exonic	Synpo2	frameshift deletion	Synpo2:NM_080451:exon4:c.2772delC:p.S925Lfs*33	3qG1	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr3	126936668	PW2017tail	colon	sgMsh2	126936668	G	A	SNV	Mutect2;Vardict	2	0.035	155	0	0	NA	exonic	Ank2	nonsynonymous SNV	"Ank2:NM_001034168:exon4:c.C1765T:p.R589C,Ank2:NM_178655:exon19:c.C2116T:p.R706C,Ank2:NM_001327939:exon40:c.C10666T:p.R3556C,Ank2:NM_001327938:exon42:c.C10912T:p.R3638C"	3qG2	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.095367847	3	0.9832125	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	136876105	PW2017tail	colon	sgMsh2	136876105	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.02	341	0	0	NA	exonic	Ppp3ca	stopgain	"Ppp3ca:NM_001293622:exon4:c.G401A:p.W134X,Ppp3ca:NM_008913:exon4:c.G401A:p.W134X"	3qG3	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.054495913	3	0.9999995	TGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	138150465	PW2017tail	colon	sgMsh2	138150465	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	179	0	0	NA	exonic	Trmt10a	nonsynonymous SNV	"Trmt10a:NM_001348196:exon5:c.G486T:p.W162C,Trmt10a:NM_175389:exon5:c.G486T:p.W162C,Trmt10a:NM_001348197:exon6:c.G486T:p.W162C"	3qG3	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	2	0.8140833	GGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr3	159872977	PW2017tail	colon	sgMsh2	159872977	A	-	Deletion	Mutect2;Vardict	2	0.038	173	0	0	NA	exonic	Wls	frameshift deletion	"Wls:NM_001356350:exon2:c.175delA:p.T60Qfs*43,Wls:NM_026582:exon2:c.175delA:p.T60Qfs*43"	3qH4	chr3-3642831-159911278	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	NA	NA	TAA	frameshift	NA	NA	NA	-1
PW2017T1	chr4	42850792	PW2017tail	colon	sgMsh2	42850792	A	G	SNV	Mutect2;Vardict	2	0.03	256	0	0	NA	exonic	Fam205a1	nonsynonymous SNV	Fam205a1:NM_001277167:exon4:c.T1363C:p.Y455H	4qA5	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.081743869	3	0.9997029	TAG	nonsynonymous	G	5	GGGGG	NA
PW2017T1	chr4	60005547	PW2017tail	colon	sgMsh2	60005547	T	C	SNV	Mutect2;Vardict	2	0.029	210	0	0	NA	exonic	Mup6	nonsynonymous SNV	Mup6:NM_001081285:exon4:c.T377C:p.M126T	4qB3	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.079019074	3	0.9989954	ATG	nonsynonymous	AATGA	11	AATGAAATGAA	NA
PW2017T1	chr4	88827568	PW2017tail	colon	sgMsh2	88827568	C	A	SNV	Mutect2;Vardict	2	0.019	502	0	0	NA	exonic	Ifna6	synonymous SNV	Ifna6:NM_206871:exon1:c.C153A:p.S51S	4qC4	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.051771117	3	1.27E-09	CCT	synonymous	CCTG	8	CCTGCCTG	NA
PW2017T1	chr4	112391709	PW2017tail	colon	sgMsh2	112391709	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	93	0	0	NA	exonic	Skint9	nonsynonymous SNV	Skint9:NM_177864:exon4:c.T521C:p.V174A	4qD1	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	2	0.5830227	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr4	116154847	PW2017tail	colon	sgMsh2	116154847	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	141	0	0	NA	exonic	Pomgnt1	nonsynonymous SNV	"Pomgnt1:NM_001290658:exon10:c.C901T:p.L301F,Pomgnt1:NM_029786:exon10:c.C868T:p.L290F,Pomgnt1:NM_026651:exon11:c.C967T:p.L323F"	4qD1	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.239782016	2	0.009902552	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr4	128787064	PW2017tail	colon	sgMsh2	128787064	G	-	Deletion	Mutect2;Vardict	2	0.065	81	0	0	NA	exonic	Zfp362	frameshift deletion	Zfp362:NM_001081098:exon5:c.506delC:p.P169Hfs*215	4qD2.2	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.177111717	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr4	133533209	PW2017tail	colon	sgMsh2	133533209	C	A	SNV	Mutect2;Vardict	2	0.078	96	0	0	NA	exonic	Nudc	nonsynonymous SNV	Nudc:NM_010948:exon7:c.G933T:p.Q311H	4qD2.3	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.21253406	2	0.8865007	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr4	135175491	PW2017tail	colon	sgMsh2	135175491	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.214	15	0	0	NA	exonic	Runx3	nonsynonymous SNV	"Runx3:NM_001369050:exon5:c.G889A:p.A297T,Runx3:NM_019732:exon6:c.G931A:p.A311T"	4qD3	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.583106267	2	0.8206777	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr4	137608136	PW2017tail	colon	sgMsh2	137608136	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	169	0	0	NA	exonic	Usp48	nonsynonymous SNV	"Usp48:NM_001347227:exon5:c.A619G:p.N207D,Usp48:NM_001355588:exon5:c.A619G:p.N207D,Usp48:NM_130879:exon5:c.A619G:p.N207D"	4qD3	chr4-3834436-156200568	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	3	0.975459	GAA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	14676127	PW2017tail	colon	sgMsh2	14676127	T	C	SNV	Mutect2;Vardict	2	0.049	92	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.T4998C:p.P1666P,Pclo:NM_011995:exon5:c.T4998C:p.P1666P"	5qA1	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	3	0.73085	CTA	synonymous	NA	NA	NA	NA
PW2017T1	chr5	14679442	PW2017tail	colon	sgMsh2	14679442	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	163	0	0	NA	exonic	Pclo	synonymous SNV	"Pclo:NM_001110796:exon5:c.T8313C:p.A2771A,Pclo:NM_011995:exon5:c.T8313C:p.A2771A"	5qA1	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.092643052	3	0.9885649	CTT	synonymous	NA	NA	NA	NA
PW2017T1	chr5	65225378	PW2017tail	colon	sgMsh2	65225378	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.062	261	0	0	NA	exonic	Wdr19	nonsynonymous SNV	"Wdr19:NM_001359879:exon14:c.G1444A:p.A482T,Wdr19:NM_001359880:exon14:c.G1444A:p.A482T,Wdr19:NM_153391:exon14:c.G1444A:p.A482T"	5qC3.1	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	2	0.7329596	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	96709994	PW2017tail	colon	sgMsh2	96709994	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	158	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon44:c.T6146C:p.M2049T	5qE3	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.14986376	3	0.6533656	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	104018180	PW2017tail	colon	sgMsh2	104018180	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	65	0	0	NA	exonic	Hsd17b11	synonymous SNV	Hsd17b11:NM_053262:exon2:c.G312A:p.A104A	5qE5	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.340599455	2	0.9913173	TCG	synonymous	T	5	TTTTT	NA
PW2017T1	chr5	109173934	PW2017tail	colon	sgMsh2	109173934	T	C	SNV	Mutect2;Vardict	2	0.021	319	0	0	NA	exonic	Vmn2r13	nonsynonymous SNV	"Vmn2r13:NM_001104624:exon3:c.A896G:p.D299G,Vmn2r13:NM_001384974:exon3:c.A896G:p.D299G"	5qF	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.057220708	3	0.9999983	ATC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	110340887	PW2017tail	colon	sgMsh2	110340887	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	287	0	0	NA	exonic	P2rx2	nonsynonymous SNV	"P2rx2:NM_001164833:exon9:c.G971A:p.G324E,P2rx2:NM_001164834:exon9:c.G971A:p.G324E,P2rx2:NM_001310700:exon9:c.G1007A:p.G336E,P2rx2:NM_001310701:exon9:c.G710A:p.G237E,P2rx2:NM_153400:exon9:c.G971A:p.G324E"	5qF	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.08719346	3	0.9997886	CCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	110673202	PW2017tail	colon	sgMsh2	110673202	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	143	0	0	NA	exonic	Ep400	synonymous SNV	"Ep400:NM_173066:exon45:c.G7863A:p.Q2621Q,Ep400:NM_029337:exon46:c.G7971A:p.Q2657Q"	5qF	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	3	0.7100005	GCT	synonymous	TGC	43	CTGCTGTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGC	NA
PW2017T1	chr5	124750859	PW2017tail	colon	sgMsh2	124750859	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.128	45	0	0	NA	exonic	Dnah10	synonymous SNV	Dnah10:NM_019536:exon14:c.C2268A:p.T756T	5qF	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.348773842	2	0.9674929	CCC	synonymous	NA	NA	NA	NA
PW2017T1	chr5	127792363	PW2017tail	colon	sgMsh2	127792363	T	C	SNV	Mutect2;Vardict	2	0.093	44	0	0	NA	exonic	Tmem132d	nonsynonymous SNV	Tmem132d:NM_172885:exon7:c.A1906G:p.M636V	5qG1.2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.253405995	2	0.8395621	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr5	134707871	PW2017tail	colon	sgMsh2	134707871	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.069	75	0	0	NA	exonic	Eln	frameshift deletion	Eln:NM_007925:exon30:c.2132delC:p.P711Lfs*85	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.188010899	NA	NA	AGG	frameshift	GCA	22	GCAGCAGCAGCGGCAGCAGCAG	-1
PW2017T1	chr5	136968274	PW2017tail	colon	sgMsh2	136968274	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	172	0	0	NA	exonic	Cldn15	synonymous SNV	Cldn15:NM_021719:exon1:c.C168T:p.S56S	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.158038147	3	0.5281661	CCC	synonymous	NA	NA	NA	NA
PW2017T1	chr5	145362087	PW2017tail	colon	sgMsh2	145362087	A	-	Deletion	Mutect2;Vardict	2	0.037	400	0	0	NA	exonic	Cyp3a57	frameshift deletion	Cyp3a57:NM_001100180:exon3:c.196delA:p.K67Nfs*28	5qG2	chr5-3673201-150478141	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.100817439	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T1	chr6	28420718	PW2017tail	colon	sgMsh2	28420718	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	109	0	0	NA	exonic	Gcc1	nonsynonymous SNV	Gcc1:NM_028900:exon1:c.C599T:p.A200V	6qA3.3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.163487738	2	0.539166	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	58307364	PW2017tail	colon	sgMsh2	58307364	T	-	Deletion	Mutect2;Vardict	2	0.063	233	0	0	NA	exonic	Vmn1r29	frameshift deletion	Vmn1r29:NM_053232:exon1:c.68delT:p.F25Sfs*4	6qB3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.171662125	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr6	60973026	PW2017tail	colon	sgMsh2	60973026	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	134	0	0	NA	exonic	Mmrn1	nonsynonymous SNV	"Mmrn1:NM_001163507:exon5:c.C959T:p.S320L,Mmrn1:NM_027613:exon5:c.C959T:p.S320L"	6qB3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.280653951	2	0.9986548	TCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	67298195	PW2017tail	colon	sgMsh2	67298195	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	234	0	0	NA	exonic	Il12rb2	nonsynonymous SNV	"Il12rb2:NM_001311141:exon8:c.G943T:p.A315S,Il12rb2:NM_008354:exon14:c.G1945T:p.A649S"	6qC1	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.215258856	2	0.9951571	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	78372906	PW2017tail	colon	sgMsh2	78372906	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	134	0	0	NA	exonic	Reg3b	nonsynonymous SNV	Reg3b:NM_011036:exon5:c.G428A:p.R143H	6qC3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.128065395	3	0.8501269	CGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	80021677	PW2017tail	colon	sgMsh2	80021677	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.061	145	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.T71C:p.L24P,Lrrtm4:NM_001282102:exon2:c.T71C:p.L24P,Lrrtm4:NM_001347261:exon2:c.T68C:p.L23P,Lrrtm4:NM_178731:exon2:c.T68C:p.L23P"	6qC3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	2	0.5945258	CTG	nonsynonymous	CTG	9	CTGCTGCTG	NA
PW2017T1	chr6	83048877	PW2017tail	colon	sgMsh2	83048877	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.062	88	0	0	NA	exonic	Loxl3	nonsynonymous SNV	Loxl3:NM_013586:exon7:c.G1105A:p.A369T	6qC3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	2	0.5781345	TGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	97176798	PW2017tail	colon	sgMsh2	97176798	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	179	0	0	NA	exonic	Tmf1	nonsynonymous SNV	Tmf1:NM_001081111:exon2:c.G313A:p.D105N	6qD3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.103542234	3	0.9836538	TCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	97421562	PW2017tail	colon	sgMsh2	97421562	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	197	0	0	NA	exonic	Frmd4b	nonsynonymous SNV	"Frmd4b:NM_001346637:exon3:c.C323T:p.T108M,Frmd4b:NM_001346639:exon3:c.C185T:p.T62M,Frmd4b:NM_145148:exon4:c.C161T:p.T54M"	6qD3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.228882834	2	0.9962144	CGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	113115654	PW2017tail	colon	sgMsh2	113115654	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	208	0	0	NA	exonic	Setd5	nonsynonymous SNV	"Setd5:NM_173005:exon7:c.G994A:p.V332I,Setd5:NM_028385:exon8:c.G937A:p.V313I"	6qE3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.160762943	2	0.5257093	GGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	120958474	PW2017tail	colon	sgMsh2	120958474	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	57	0	0	NA	exonic	Mical3	nonsynonymous SNV	Mical3:NM_001270475:exon26:c.G5090A:p.R1697H	6qF1	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.250681199	2	0.890153	GCG	nonsynonymous	G	5	GGGGG	NA
PW2017T1	chr6	125338255	PW2017tail	colon	sgMsh2	125338255	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	106	0	0	NA	exonic	Scnn1a	synonymous SNV	Scnn1a:NM_011324:exon5:c.C1083T:p.R361R	6qF3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.19346049	2	0.8097472	GCA	synonymous	NA	NA	NA	NA
PW2017T1	chr6	136587090	PW2017tail	colon	sgMsh2	136587090	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	107	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon9:c.A2306C:p.Q769P	6qG1	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.155313351	3	0.550723	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	142451625	PW2017tail	colon	sgMsh2	142451625	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	148	0	0	NA	exonic	Gys2	nonsynonymous SNV	Gys2:NM_145572:exon8:c.G1078A:p.V360I	6qG2	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.550408719	1	0.9998704	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr6	146233960	PW2017tail	colon	sgMsh2	146233960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	99	0	0	NA	exonic	Itpr2	synonymous SNV	"Itpr2:NM_010586:exon39:c.G5373A:p.T1791T,Itpr2:NM_019923:exon40:c.G5472A:p.T1824T"	6qG3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.351498638	2	0.9994898	CCG	synonymous	NA	NA	NA	NA
PW2017T1	chr6	149328234	PW2017tail	colon	sgMsh2	149328234	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	160	0	0	NA	exonic	Resf1	nonsynonymous SNV	"Resf1:NM_001289662:exon3:c.T2777C:p.M926T,Resf1:NM_026054:exon3:c.T2777C:p.M926T,Resf1:NM_001289661:exon4:c.T2777C:p.M926T"	6qG3	chr6-3483595-149512217	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.130790191	3	0.8684134	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	9976355	PW2017tail	colon	sgMsh2	9976355	C	T	SNV	Mutect2;MuSe;Vardict	3	0.052	368	0	0	NA	exonic	Vmn2r49	nonsynonymous SNV	Vmn2r49:NM_001105156:exon6:c.G2449A:p.A817T	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.141689373	3	0.9342198	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	10047796	PW2017tail	colon	sgMsh2	10047796	A	G	SNV	Mutect2;Vardict	2	0.026	279	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon3:c.T1069C:p.Y357H	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.070844687	3	0.9999584	TAT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	10100386	PW2017tail	colon	sgMsh2	10100386	C	T	SNV	Mutect2;Vardict	2	0.036	303	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.G724A:p.V242M	7qA1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	3	0.9994913	ACA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	17090647	PW2017tail	colon	sgMsh2	17090647	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	188	0	0	NA	exonic	Psg16	stopgain	"Psg16:NM_001310628:exon2:c.G82T:p.G28X,Psg16:NM_007676:exon2:c.G82T:p.G28X"	7qA2	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.111716621	3	0.9752561	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	17715074	PW2017tail	colon	sgMsh2	17715074	C	T	SNV	Mutect2;Vardict	2	0.034	227	0	0	NA	exonic	Ceacam5	stopgain	Ceacam5:NM_028480:exon2:c.C364T:p.R122X	7qA2	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.092643052	3	0.9979657	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	19035878	PW2017tail	colon	sgMsh2	19035878	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	100	0	0	NA	exonic	Sympk	nonsynonymous SNV	"Sympk:NM_001360713:exon7:c.T479C:p.M160T,Sympk:NM_026605:exon7:c.T479C:p.M160T"	7qA3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.16893733	2	0.5898386	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	27659090	PW2017tail	colon	sgMsh2	27659090	C	-	Deletion	Strelka2;Vardict	2	0.0758	66	0	0	NA	exonic	Map3k10	frameshift deletion	Map3k10:NM_001290528:exon7:c.1637delG:p.G546Afs*122	7qA3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.20653951	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T1	chr7	79841724	PW2017tail	colon	sgMsh2	79841724	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	57	0	0	NA	exonic	Anpep	synonymous SNV	Anpep:NM_008486:exon2:c.C528T:p.Y176Y	7qD2	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.250681199	2	0.890153	CGT	synonymous	NA	NA	NA	NA
PW2017T1	chr7	85565286	PW2017tail	colon	sgMsh2	85565286	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	380	0	0	NA	exonic	Vmn2r70	nonsynonymous SNV	Vmn2r70:NM_001384914:exon3:c.A648T:p.Q216H	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.092643052	3	0.9999679	ATT	nonsynonymous	GAATT	10	GAATTGAATT	NA
PW2017T1	chr7	86920249	PW2017tail	colon	sgMsh2	86920249	A	-	Deletion	Strelka2;Vardict	2	0.0905	210	0	0	NA	exonic	Vmn2r78	frameshift deletion	Vmn2r78:NM_001105189:exon2:c.349delA:p.K119Rfs*15	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.246594005	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW2017T1	chr7	86921459	PW2017tail	colon	sgMsh2	86921459	C	T	SNV	Mutect2;Vardict	2	0.045	396	0	0	NA	exonic	Vmn2r78	nonsynonymous SNV	Vmn2r78:NM_001105189:exon3:c.C1184T:p.S395F	7qD3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.122615804	3	0.9973624	TCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	103741222	PW2017tail	colon	sgMsh2	103741222	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	138	0	0	NA	exonic	Olfr629	nonsynonymous SNV	Olfr629:NM_146821:exon1:c.C17T:p.T6I	7qE3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.125340599	3	0.8743237	TGT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	105619460	PW2017tail	colon	sgMsh2	105619460	C	-	Deletion	Mutect2;Vardict	2	0.085	57	0	0	NA	exonic	Trim3	frameshift deletion	"Trim3:NM_001285870:exon3:c.286delG:p.A96Lfs*105,Trim3:NM_001285871:exon3:c.286delG:p.A96Lfs*105,Trim3:NM_001285873:exon3:c.286delG:p.A96Lfs*105,Trim3:NM_001360425:exon3:c.286delG:p.A96Lfs*111,Trim3:NM_018880:exon3:c.286delG:p.A96Lfs*105"	7qE3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.231607629	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T1	chr7	117634764	PW2017tail	colon	sgMsh2	117634764	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	132	0	0	NA	exonic	Xylt1	nonsynonymous SNV	Xylt1:NM_175645:exon7:c.A1517T:p.D506V	7qF1	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.166212534	2	0.5853976	GAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	120940397	PW2017tail	colon	sgMsh2	120940397	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	84	0	0	NA	exonic	Polr3e	synonymous SNV	"Polr3e:NM_001164096:exon17:c.C1366A:p.R456R,Polr3e:NM_001379288:exon18:c.C1456A:p.R486R,Polr3e:NM_025298:exon18:c.C1444A:p.R482R"	7qF2	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	3	0.6322117	ACG	synonymous	NA	NA	NA	NA
PW2017T1	chr7	132634127	PW2017tail	colon	sgMsh2	132634127	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	90	0	0	NA	exonic	Lhpp	nonsynonymous SNV	Lhpp:NM_029609:exon3:c.A440C:p.N147T	7qF3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.133514986	3	0.7267218	AAC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr7	133601983	PW2017tail	colon	sgMsh2	133601983	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	148	0	0	NA	exonic	Tex36	synonymous SNV	Tex36:NM_028654:exon1:c.T36C:p.N12N	7qF3	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.130790191	3	0.8517435	TAT	synonymous	NA	NA	NA	NA
PW2017T1	chr7	139558910	PW2017tail	colon	sgMsh2	139558910	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	177	0	0	NA	exonic	Inpp5a	nonsynonymous SNV	"Inpp5a:NM_001127363:exon10:c.G769A:p.A257T,Inpp5a:NM_001355162:exon10:c.G793A:p.A265T,Inpp5a:NM_183144:exon10:c.G769A:p.A257T"	7qF4	chr7-4560606-143062472	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.152588556	3	0.6244899	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	3666069	PW2017tail	colon	sgMsh2	3666069	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	181	0	0	NA	exonic	Mcemp1	nonsynonymous SNV	Mcemp1:NM_026985:exon2:c.T73C:p.Y25H	8qA1.1	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.08719346	3	0.9952762	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	43295983	PW2017tail	colon	sgMsh2	43295983	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	111	0	0	NA	exonic	Zfp42	synonymous SNV	Zfp42:NM_009556:exon4:c.C480T:p.G160G	8qA4	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.125340599	3	0.8274552	CGC	synonymous	NA	NA	NA	NA
PW2017T1	chr8	43520529	PW2017tail	colon	sgMsh2	43520529	C	T	SNV	Mutect2;MuSe;Vardict	3	0.046	537	0	0	NA	exonic	Adam26b	nonsynonymous SNV	Adam26b:NM_001009547:exon2:c.G1435A:p.G479R	8qA4	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.125340599	3	0.9994117	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	43625359	PW2017tail	colon	sgMsh2	43625359	G	A	SNV	Mutect2;Vardict	2	0.039	580	0	0	NA	exonic	Adam34l	synonymous SNV	Adam34l:NM_001025240:exon2:c.C1827T:p.S609S	8qA4	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.10626703	3	0.9999964	CGC	synonymous	NA	NA	NA	NA
PW2017T1	chr8	43626425	PW2017tail	colon	sgMsh2	43626425	A	-	Deletion	Mutect2;Vardict	2	0.029	253	0	0	NA	exonic	Adam34l	stopgain	Adam34l:NM_001025240:exon2:c.761delT:p.L254fs*0	8qA4	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.079019074	NA	NA	TAA	nonsynonymous	NA	NA	NA	-1
PW2017T1	chr8	45025770	PW2017tail	colon	sgMsh2	45025770	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	203	0	0	NA	exonic	Fat1	nonsynonymous SNV	Fat1:NM_001081286:exon9:c.G7783A:p.A2595T	8qB1.1	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.215258856	2	0.9901932	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	71684012	PW2017tail	colon	sgMsh2	71684012	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.088	67	0	0	NA	exonic	Jak3	frameshift deletion	"Jak3:NM_001190830:exon15:c.1962delG:p.G656Vfs*9,Jak3:NM_010589:exon15:c.1962delG:p.G656Vfs*9"	8qB3.3	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.239782016	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr8	81001085	PW2017tail	colon	sgMsh2	81001085	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	110	0	0	NA	exonic	Usp38	nonsynonymous SNV	Usp38:NM_027554:exon4:c.A1018G:p.S340G	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.144414169	3	0.6676491	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	84031095	PW2017tail	colon	sgMsh2	84031095	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	75	0	0	NA	exonic	Il27ra	nonsynonymous SNV	Il27ra:NM_016671:exon14:c.C1808A:p.P603Q	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.160762943	2	5.75E-09	TGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr8	84264328	PW2017tail	colon	sgMsh2	84264328	G	-	Deletion	Mutect2;Vardict	2	0.054	150	0	0	NA	exonic	Ccdc130	frameshift deletion	"Ccdc130:NM_001294281:exon3:c.38delC:p.P13Qfs*76,Ccdc130:NM_026350:exon3:c.38delC:p.P13Qfs*76"	8qC2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.147138965	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr8	86860486	PW2017tail	colon	sgMsh2	86860486	T	-	Deletion	Mutect2;Vardict	2	0.042	158	0	0	NA	exonic	N4bp1	frameshift deletion	N4bp1:NM_030563:exon2:c.1823delA:p.N608Tfs*7	8qC3	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.114441417	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr8	116911128	PW2017tail	colon	sgMsh2	116911128	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	209	0	0	NA	exonic	Cmc2	nonsynonymous SNV	Cmc2:NM_026844:exon2:c.T81A:p.N27K	8qE1	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.08719346	3	0.9979177	CAT	nonsynonymous	T	5	TTTTT	NA
PW2017T1	chr8	126025194	PW2017tail	colon	sgMsh2	126025194	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	68	0	0	NA	exonic	Kcnk1	nonsynonymous SNV	Kcnk1:NM_008430:exon2:c.G538T:p.A180S	8qE2	chr8-3511896-126970168	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.217983651	2	0.8314696	GGC	nonsynonymous	GGT	8	GGTGGTGG	NA
PW2017T1	chr9	25603510	PW2017tail	colon	sgMsh2	25603510	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	103	0	0	NA	exonic	Eepd1	synonymous SNV	Eepd1:NM_026189:exon8:c.T1612C:p.L538L	9qA4	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.155313351	3	0.5491926	ATT	synonymous	NA	NA	NA	NA
PW2017T1	chr9	38061885	PW2017tail	colon	sgMsh2	38061885	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	362	0	0	NA	exonic	Olfr885	synonymous SNV	Olfr885:NM_001011739:exon1:c.C564T:p.C188C	9qA4	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.079019074	3	0.999993	GCT	synonymous	NA	NA	NA	NA
PW2017T1	chr9	38665524	PW2017tail	colon	sgMsh2	38665524	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.118	177	0	0	NA	exonic	Olfr917	frameshift insertion	Olfr917:NM_001011864:exon1:c.318dupT:p.V107Cfs*2	9qA5.1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.321525886	NA	NA	ACA	frameshift	A	5	AAAAA	1
PW2017T1	chr9	39019531	PW2017tail	colon	sgMsh2	39019531	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	177	0	0	NA	exonic	Olfr146	frameshift deletion	Olfr146:NM_146747:exon1:c.9delA:p.G4Afs*5	9qA5.1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.198910082	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T1	chr9	44507802	PW2017tail	colon	sgMsh2	44507802	G	A	SNV	Mutect2;Vardict	2	0.091	46	0	0	NA	exonic	Bcl9l	nonsynonymous SNV	"Bcl9l:NM_001357490:exon6:c.G2936A:p.G979E,Bcl9l:NM_030256:exon7:c.G3047A:p.G1016E"	9qA5.2	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.247956403	2	0.8361433	GGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	49418773	PW2017tail	colon	sgMsh2	49418773	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	148	0	0	NA	exonic	Ankk1	nonsynonymous SNV	"Ankk1:NM_001376951:exon6:c.C881T:p.A294V,Ankk1:NM_172922:exon6:c.C881T:p.A294V"	9qA5.3	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.485013624	1	0.8716037	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	50621702	PW2017tail	colon	sgMsh2	50621702	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.137	125	0	0	NA	exonic	Pih1d2	nonsynonymous SNV	Pih1d2:NM_028300:exon5:c.C629T:p.A210V	9qA5.3	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.373297003	2	0.9998688	GCG	nonsynonymous	AAGC	8	AAGCAAGC	NA
PW2017T1	chr9	52115445	PW2017tail	colon	sgMsh2	52115445	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	86	0	0	NA	exonic	Zc3h12c	synonymous SNV	"Zc3h12c:NM_001162921:exon6:c.C2673T:p.A891A,Zc3h12c:NM_001368810:exon6:c.C2616T:p.A872A"	9qA5.3	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.179836512	2	0.6658927	CGG	synonymous	NA	NA	NA	NA
PW2017T1	chr9	53511840	PW2017tail	colon	sgMsh2	53511840	A	-	Deletion	Mutect2;Vardict	2	0.052	120	0	0	NA	exonic	Atm	stopgain	Atm:NM_007499:exon13:c.1985delT:p.L662fs*0	9qA5.3	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.141689373	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
PW2017T1	chr9	58018273	PW2017tail	colon	sgMsh2	58018273	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	154	0	0	NA	exonic	Cyp11a1	nonsynonymous SNV	"Cyp11a1:NM_019779:exon3:c.C496T:p.P166S,Cyp11a1:NM_001346787:exon4:c.C31T:p.P11S"	9qB	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.261580381	2	0.9983466	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	64325773	PW2017tail	colon	sgMsh2	64325773	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	57	0	0	NA	exonic	Dis3l	stopgain	"Dis3l:NM_001001295:exon5:c.G670T:p.E224X,Dis3l:NM_001177784:exon5:c.G421T:p.E141X,Dis3l:NM_172519:exon5:c.G421T:p.E141X"	9qC	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.21253406	2	0.7693991	TCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	65557011	PW2017tail	colon	sgMsh2	65557011	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	58	0	0	NA	exonic	Plekho2	synonymous SNV	Plekho2:NM_153119:exon6:c.G555A:p.V185V	9qC	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.204359673	2	0.7375402	ACA	synonymous	NA	NA	NA	NA
PW2017T1	chr9	79818610	PW2017tail	colon	sgMsh2	79818610	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	201	0	0	NA	exonic	Filip1	nonsynonymous SNV	"Filip1:NM_001357354:exon2:c.C1982A:p.P661H,Filip1:NM_001081243:exon5:c.C2726A:p.P909H,Filip1:NM_001357352:exon5:c.C2771A:p.P924H,Filip1:NM_001357353:exon5:c.C2726A:p.P909H"	9qE1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.098092643	3	0.9935886	GGG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	100944831	PW2017tail	colon	sgMsh2	100944831	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	163	0	0	NA	exonic	Stag1	synonymous SNV	"Stag1:NM_001357264:exon26:c.T2439C:p.S813S,Stag1:NM_009282:exon27:c.T2850C:p.S950S,Stag1:NM_001357265:exon28:c.T1452C:p.S484S"	9qE4	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.934604905	1	1	GTG	synonymous	NA	NA	NA	NA
PW2017T1	chr9	106896764	PW2017tail	colon	sgMsh2	106896764	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	74	0	0	NA	exonic	Dock3	frameshift deletion	Dock3:NM_153413:exon52:c.5555delC:p.P1852Rfs*44	9qF1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.294277929	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr9	106941283	PW2017tail	colon	sgMsh2	106941283	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	183	0	0	NA	exonic	Dock3	nonsynonymous SNV	Dock3:NM_153413:exon35:c.G3611T:p.R1204M	9qF1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.215258856	2	0.9845777	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	108299763	PW2017tail	colon	sgMsh2	108299763	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	245	0	0	NA	exonic	Amt	nonsynonymous SNV	Amt:NM_001013814:exon6:c.T569C:p.V190A	9qF1	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.267029973	2	0.9999787	GTG	nonsynonymous	NA	NA	NA	NA
PW2017T1	chr9	110385495	PW2017tail	colon	sgMsh2	110385495	G	-	Deletion	Mutect2;Vardict	2	0.072	69	0	0	NA	exonic	Ptpn23	frameshift deletion	Ptpn23:NM_001081043:exon25:c.4837delC:p.Q1613Sfs*13	9qF2	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.196185286	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2017T1	chr9	110548234	PW2017tail	colon	sgMsh2	110548235	AG	-	Deletion	Strelka2;Vardict	2	0.086	221	0	0	NA	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon3:c.1116_1117del:p.D375fs*0	9qF2	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.234332425	NA	NA	CAG	frameshift	AG	9	AGAGAGAGA	-2
PW2017T1	chr9	123855890	PW2017tail	colon	sgMsh2	123855890	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	195	0	0	NA	exonic	Xcr1	nonsynonymous SNV	Xcr1:NM_011798:exon2:c.G806T:p.S269I	9qF4	chr9-3342997-124127224	2	1	1	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	1	0.089918256	3	0.9961061	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	37571816	PW2017tail	colon	sgMsh2	37571816	A	C	SNV	Mutect2;Vardict	2	0.031	209	0	0	NA	exonic	Rhox2f	nonsynonymous SNV	Rhox2f:NM_001085356:exon2:c.A206C:p.Q69P	XqA3.3	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	CAA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	42725390	PW2017tail	colon	sgMsh2	42725390	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.105	68	0	0	NA	exonic	Tenm1	synonymous SNV	Tenm1:NM_011855:exon15:c.C2388T:p.I796I	XqA4	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	CGA	synonymous	NA	NA	NA	NA
PW2017T1	chrX	69867806	PW2017tail	colon	sgMsh2	69867806	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	95	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon20:c.T3794C:p.L1265P	XqA7.2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	74037267	PW2017tail	colon	sgMsh2	74037267	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.154	62	0	0	NA	exonic	Mecp2	nonsynonymous SNV	"Mecp2:NM_001081979:exon2:c.C143T:p.A48V,Mecp2:NM_010788:exon3:c.C92T:p.A31V"	XqA7.3	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	95425168	PW2017tail	colon	sgMsh2	95425168	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	94	0	0	NA	exonic	Amer1	nonsynonymous SNV	Amer1:NM_175179:exon2:c.G3343A:p.A1115T	XqC3	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	100665697	PW2017tail	colon	sgMsh2	100665697	C	T	SNV	Mutect2;Vardict	2	0.133	31	0	0	NA	exonic	Kif4	nonsynonymous SNV	Kif4:NM_008446:exon8:c.C923T:p.T308I	XqC3	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	ACT	nonsynonymous	NA	NA	NA	NA
PW2017T1	chrX	120637610	PW2017tail	colon	sgMsh2	120637610	A	-	Deletion	Mutect2;Vardict	2	0.089	72	0	0	NA	exonic	Pcdh11x	frameshift deletion	Pcdh11x:NM_001271809:exon5:c.3133delA:p.A1047Qfs*72	XqE2	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T1	chrX	134062711	PW2017tail	colon	sgMsh2	134062711	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	102	0	0	NA	exonic	Cstf2	synonymous SNV	"Cstf2:NM_001290398:exon6:c.G678A:p.P226P,Cstf2:NM_001290399:exon6:c.G678A:p.P226P,Cstf2:NM_001359053:exon6:c.G678A:p.P226P,Cstf2:NM_001359054:exon6:c.G678A:p.P226P,Cstf2:NM_133196:exon6:c.G678A:p.P226P"	XqE3	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	CGC	synonymous	NA	NA	NA	NA
PW2017T1	chrX	161209201	PW2017tail	colon	sgMsh2	161209201	C	T	SNV	Mutect2;Vardict	2	0.058	79	0	0	NA	exonic	Scml2	nonsynonymous SNV	"Scml2:NM_001290651:exon8:c.C752T:p.A251V,Scml2:NM_001290652:exon8:c.C752T:p.A251V"	XqF4	NA	NA	NA	NA	0.734	2	NON-ABERRANT;POOR GOF (76.8%)	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	12818507	PW2017tail	colon	sgMsh2	12818507	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	233	0	0	NA	exonic	Sulf1	nonsynonymous SNV	"Sulf1:NM_001198566:exon8:c.C1015T:p.R339C,Sulf1:NM_001198565:exon9:c.C1015T:p.R339C,Sulf1:NM_172294:exon9:c.C1015T:p.R339C"	1qA3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.342577488	2	0.5300338	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	34190598	PW2017tail	colon	sgMsh2	34190598	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	226	0	0	NA	exonic	Dst	frameshift deletion	"Dst:NM_134448:exon36:c.7271delT:p.Y2426Mfs*3,Dst:NM_001276764:exon39:c.7805delT:p.Y2604Mfs*3"	1qB	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.469820555	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr1	40007482	PW2017tail	colon	sgMsh2	40007482	-	A	Insertion	Mutect2;Vardict	2	0.035	252	0	0	NA	exonic	Map4k4	frameshift insertion	"Map4k4:NM_001252201:exon18:c.1918dupA:p.P642Afs*1,Map4k4:NM_001252202:exon19:c.2080dupA:p.P696Afs*1,Map4k4:NM_008696:exon19:c.2149dupA:p.P719Afs*1,Map4k4:NM_001252200:exon20:c.2311dupA:p.P773Afs*1"	1qB	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.114192496	NA	NA	CCA	frameshift	A	5	AAAAA	1
PW2017T2	chr1	44178238	PW2017tail	colon	sgMsh2	44178238	A	-	Deletion	Strelka2;Vardict	2	0.1212	99	0	0	NA	exonic	Ercc5	frameshift deletion	Ercc5:NM_011729:exon13:c.2740delA:p.K916Nfs*6	1qC1.1	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.3954323	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
PW2017T2	chr1	54314164	PW2017tail	colon	sgMsh2	54314164	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	127	0	0	NA	exonic	Ccdc150	frameshift deletion	Ccdc150:NM_030025:exon15:c.1688delA:p.I565Lfs*21	1qC1.1	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.329526917	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr1	68250581	PW2017tail	colon	sgMsh2	68250581	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	172	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon19:c.A2300G:p.D767G	1qC3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.280587276	2	0.9749489	ATC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	72666582	PW2017tail	colon	sgMsh2	72666582	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	89	0	0	NA	exonic	Ankar	synonymous SNV	"Ankar:NM_001347063:exon12:c.T2265C:p.T755T,Ankar:NM_176980:exon12:c.T2268C:p.T756T"	1qC3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.417618271	1	0.909743	TAG	synonymous	NA	NA	NA	NA
PW2017T2	chr1	75186620	PW2017tail	colon	sgMsh2	75186620	G	A	SNV	Mutect2;Vardict	2	0.077	54	0	0	NA	exonic	Atg9a	nonsynonymous SNV	"Atg9a:NM_001003917:exon8:c.C835T:p.R279W,Atg9a:NM_001288612:exon8:c.C835T:p.R279W,Atg9a:NM_001288613:exon8:c.C181T:p.R61W"	1qC4	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.251223491	2	0.0982825	CGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	80533880	PW2017tail	colon	sgMsh2	80533880	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.031	287	0	0	NA	exonic	Dock10	nonsynonymous SNV	"Dock10:NM_001285927:exon42:c.G4514T:p.R1505M,Dock10:NM_175291:exon42:c.G4550T:p.R1517M"	1qC5	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.101141925	3	0.9999436	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	82287573	PW2017tail	colon	sgMsh2	82287573	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	129	0	0	NA	exonic	Irs1	nonsynonymous SNV	Irs1:NM_010570:exon1:c.G2921A:p.R974H	1qC5	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.388254486	1	0.8805683	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	83183368	PW2017tail	colon	sgMsh2	83183368	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	135	0	0	NA	exonic	Daw1	nonsynonymous SNV	"Daw1:NM_001372243:exon5:c.A469G:p.N157D,Daw1:NM_001372244:exon5:c.A430G:p.N144D,Daw1:NM_001372245:exon5:c.A469G:p.N157D,Daw1:NM_027725:exon5:c.A430G:p.N144D"	1qC5	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.469820555	1	0.9970368	CAA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	88055999	PW2017tail	colon	sgMsh2	88055999	T	G	SNV	Mutect2;Vardict	2	0.018	403	0	0	NA	exonic	Ugt1a10	nonsynonymous SNV	Ugt1a10:NM_201641:exon1:c.T518G:p.F173C	1qD	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.058727569	3	1.29E-09	TTT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	116442337	PW2017tail	colon	sgMsh2	116442337	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	251	0	0	NA	exonic	Cntnap5a	stopgain	"Cntnap5a:NM_001077425:exon17:c.C2683T:p.Q895X,Cntnap5a:NM_001371013:exon17:c.C2686T:p.Q896X"	1qE2.3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.300163132	2	0.9770603	ACA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	118459866	PW2017tail	colon	sgMsh2	118459866	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	87	0	0	NA	exonic	Clasp1	synonymous SNV	"Clasp1:NM_001293300:exon3:c.G261A:p.A87A,Clasp1:NM_001293301:exon3:c.G261A:p.A87A,Clasp1:NM_001359328:exon3:c.G261A:p.A87A,Clasp1:NM_001359329:exon3:c.G261A:p.A87A,Clasp1:NM_001359330:exon3:c.G261A:p.A87A,Clasp1:NM_001359331:exon3:c.G261A:p.A87A,Clasp1:NM_001359334:exon3:c.G261A:p.A87A,Clasp1:NM_001359335:exon3:c.G261A:p.A87A,Clasp1:NM_001359336:exon3:c.G261A:p.A87A,Clasp1:NM_001359337:exon3:c.G261A:p.A87A,Clasp1:NM_001359338:exon3:c.G261A:p.A87A,Clasp1:NM_001359339:exon3:c.G261A:p.A87A,Clasp1:NM_001359340:exon3:c.G261A:p.A87A,Clasp1:NM_001359341:exon3:c.G261A:p.A87A,Clasp1:NM_001359342:exon3:c.G261A:p.A87A,Clasp1:NM_001359343:exon3:c.G261A:p.A87A,Clasp1:NM_001359345:exon3:c.G261A:p.A87A,Clasp1:NM_001359346:exon3:c.G261A:p.A87A,Clasp1:NM_029709:exon3:c.G261A:p.A87A"	1qE2.3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.163132137	3	0.5964377	CGC	synonymous	NA	NA	NA	NA
PW2017T2	chr1	119567826	PW2017tail	colon	sgMsh2	119567826	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	162	0	0	NA	exonic	Epb41l5	frameshift deletion	Epb41l5:NM_145506:exon20:c.1760delA:p.N587Mfs*39	1qE2.3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.378466558	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr1	119910769	PW2017tail	colon	sgMsh2	119910769	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	120	0	0	NA	exonic	Tmem177	nonsynonymous SNV	Tmem177:NM_175106:exon2:c.A179C:p.H60P	1qE2.3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.384991843	1	0.8501734	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	132593352	PW2017tail	colon	sgMsh2	132593352	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	153	0	0	NA	exonic	Nfasc	synonymous SNV	"Nfasc:NM_001160316:exon24:c.A3135G:p.A1045A,Nfasc:NM_001160318:exon24:c.A3039G:p.A1013A,Nfasc:NM_182716:exon24:c.A2781G:p.A927A,Nfasc:NM_001160317:exon25:c.A3090G:p.A1030A"	1qE4	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.505709625	1	0.9997833	CTG	synonymous	NA	NA	NA	NA
PW2017T2	chr1	133356477	PW2017tail	colon	sgMsh2	133356477	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	116	0	0	NA	exonic	Ren1;Ren2	synonymous SNV	"Ren1:NM_031192:exon5:c.C579T:p.G193G,Ren2:NM_031193:exon5:c.C648T:p.G216G"	1qE4	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.244698206	2	0.9623855	GCA	synonymous	NA	NA	NA	NA
PW2017T2	chr1	139753025	PW2017tail	colon	sgMsh2	139753025	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	158	0	0	NA	exonic	Gm4788	nonsynonymous SNV	"Gm4788:NM_001029977:exon5:c.G754T:p.G252C,Gm4788:NM_001160303:exon5:c.G754T:p.G252C,Gm4788:NM_001160304:exon5:c.G754T:p.G252C"	1qF	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.212071778	2	0.9535621	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	163825819	PW2017tail	colon	sgMsh2	163825819	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	159	0	0	NA	exonic	Kifap3	nonsynonymous SNV	"Kifap3:NM_001305643:exon9:c.T973C:p.S325P,Kifap3:NM_010629:exon9:c.T973C:p.S325P"	1qH2.1	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.212071778	2	0.9544385	GTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	164345280	PW2017tail	colon	sgMsh2	164345280	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	174	0	0	NA	exonic	Nme7	nonsynonymous SNV	"Nme7:NM_001293313:exon8:c.G559A:p.A187T,Nme7:NM_138314:exon8:c.G559A:p.A187T,Nme7:NM_178071:exon8:c.G559A:p.A187T"	1qH2.2	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.300163132	2	0.9279187	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	175649245	PW2017tail	colon	sgMsh2	175649245	C	A	SNV	Mutect2;Vardict	2	0.042	104	0	0	NA	exonic	Kmo	synonymous SNV	Kmo:NM_133809:exon7:c.C543A:p.P181P	1qH3	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.137030995	3	0.8547403	CCC	synonymous	NA	NA	NA	NA
PW2017T2	chr1	188814203	PW2017tail	colon	sgMsh2	188814203	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	114	0	0	NA	exonic	Ush2a	nonsynonymous SNV	Ush2a:NM_021408:exon51:c.C10175T:p.A3392V	1qH6	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.352365416	1	0.5974934	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr1	192413109	PW2017tail	colon	sgMsh2	192413109	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	228	0	0	NA	exonic	Kcnh1	nonsynonymous SNV	"Kcnh1:NM_001038607:exon8:c.G1474A:p.V492I,Kcnh1:NM_010600:exon8:c.G1555A:p.V519I"	1qH6	chr1-6233869-195062457	2	2	0	0.613	2	NON-ABERRANT	1	0.277324633	2	0.9942842	TGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	12727772	PW2017tail	colon	sgMsh2	12727772	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	90	0	0	NA	exonic	Utrn	stopgain	Utrn:NM_011682:exon15:c.G1863A:p.W621X	10qA1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	2	0.8459723	CCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	22067849	PW2017tail	colon	sgMsh2	22067849	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	188	0	0	NA	exonic	4930444G20Rik	nonsynonymous SNV	4930444G20Rik:NM_053264:exon1:c.A231C:p.K77N	10qA3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.218597064	2	0.9851331	GTT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	28473007	PW2017tail	colon	sgMsh2	28473007	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	146	0	0	NA	exonic	Ptprk	synonymous SNV	"Ptprk:NM_001359355:exon9:c.C1522T:p.L508L,Ptprk:NM_001359356:exon9:c.C1522T:p.L508L,Ptprk:NM_008983:exon9:c.C1522T:p.L508L"	10qA4	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	3	0.9371282	CCT	synonymous	NA	NA	NA	NA
PW2017T2	chr10	33866609	PW2017tail	colon	sgMsh2	33866609	A	G	SNV	Mutect2;Vardict	2	0.018	288	0	0	NA	exonic	Sult3a1	synonymous SNV	Sult3a1:NM_020565:exon3:c.A231G:p.A77A	10qB1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.058727569	3	0.9999998	CAC	synonymous	NA	NA	NA	NA
PW2017T2	chr10	40076663	PW2017tail	colon	sgMsh2	40076663	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.152	131	0	0	NA	exonic	Slc16a10	frameshift deletion	"Slc16a10:NM_001114332:exon3:c.834delA:p.V279Sfs*32,Slc16a10:NM_028247:exon3:c.834delA:p.V279Sfs*33"	10qB1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.495921697	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr10	51481825	PW2017tail	colon	sgMsh2	51481825	A	G	SNV	Mutect2;Vardict	2	0.022	353	0	0	NA	exonic	Lilr4b	nonsynonymous SNV	"Lilr4b:NM_001291893:exon3:c.A329G:p.Q110R,Lilr4b:NM_001291892:exon4:c.A353G:p.Q118R,Lilr4b:NM_008147:exon4:c.A614G:p.Q205R"	10qB3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.07177814	3	4.17E-08	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	81271107	PW2017tail	colon	sgMsh2	81271107	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	80	0	0	NA	exonic	Apba3	synonymous SNV	Apba3:NM_018758:exon4:c.C747T:p.R249R	10qC1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.218597064	2	0.8286148	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr10	87567288	PW2017tail	colon	sgMsh2	87567288	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	84	0	0	NA	exonic	Pah	nonsynonymous SNV	Pah:NM_008777:exon6:c.C524A:p.P175H	10qC1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.466557912	1	0.9729668	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	88433135	PW2017tail	colon	sgMsh2	88433135	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	320	0	0	NA	exonic	Gnptab	nonsynonymous SNV	"Gnptab:NM_001364707:exon12:c.A1561G:p.S521G,Gnptab:NM_001004164:exon13:c.A1699G:p.S567G"	10qC1	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.114192496	3	0.9998623	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr10	116113610	PW2017tail	colon	sgMsh2	116113610	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	64	0	0	NA	exonic	Taf7l2	frameshift deletion	Taf7l2:NM_001161855:exon1:c.10delA:p.S4Afs*35	10qD2	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.499184339	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW2017T2	chr10	120224623	PW2017tail	colon	sgMsh2	120224623	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.119	69	0	0	NA	exonic	Tmbim4	frameshift deletion	Tmbim4:NM_026617:exon7:c.514delT:p.Y174Tfs*11	10qD2	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.388254486	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr10	127285816	PW2017tail	colon	sgMsh2	127285816	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.213	45	0	0	NA	exonic	Mbd6	frameshift deletion	"Mbd6:NM_001347171:exon6:c.1142delG:p.G381Efs*106,Mbd6:NM_001379570:exon6:c.1142delG:p.G381Efs*106,Mbd6:NM_001379571:exon6:c.1142delG:p.G381Efs*106,Mbd6:NM_033072:exon6:c.1142delG:p.G381Efs*106"	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.694942904	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr10	127801368	PW2017tail	colon	sgMsh2	127801368	G	A	SNV	Mutect2;MuSe;Vardict	3	0.066	428	0	0	NA	exonic	Rdh16	synonymous SNV	Rdh16:NM_009040:exon1:c.G171A:p.L57L	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.215334421	2	0.9998741	TGG	synonymous	GCTG	8	GCTGGCTG	NA
PW2017T2	chr10	129388340	PW2017tail	colon	sgMsh2	129388340	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	529	0	0	NA	exonic	Olfr784	frameshift deletion	Olfr784:NM_146729:exon1:c.706delT:p.S237Pfs*21	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.218597064	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW2017T2	chr10	129541377	PW2017tail	colon	sgMsh2	129541377	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.137	202	0	0	NA	exonic	Olfr792	nonsynonymous SNV	Olfr792:NM_001011849:exon1:c.C839G:p.A280G	10qD3	chr10-4453448-130453386	2	1	1	0.613	2	NON-ABERRANT	1	0.446982055	1	0.9991489	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	5281710	PW2017tail	colon	sgMsh2	5281710	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	71	0	0	NA	exonic	Znrf3	nonsynonymous SNV	"Znrf3:NM_001080924:exon8:c.C1802T:p.A601V,Znrf3:NM_001290501:exon9:c.C1514T:p.A505V"	11qA1	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.567699837	1	0.9958774	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	29749886	PW2017tail	colon	sgMsh2	29749886	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	157	0	0	NA	exonic	Eml6	nonsynonymous SNV	Eml6:NM_146016:exon37:c.G5249A:p.G1750E	11qA3.3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.414355628	1	0.9778867	TCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	46469505	PW2017tail	colon	sgMsh2	46469505	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	234	0	0	NA	exonic	Havcr2	synonymous SNV	Havcr2:NM_134250:exon5:c.T558G:p.S186S	11qB1.1	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	3	0.9999217	CTG	synonymous	NA	NA	NA	NA
PW2017T2	chr11	59081825	PW2017tail	colon	sgMsh2	59081825	C	-	Deletion	Mutect2;Vardict	2	0.07	80	0	0	NA	exonic	Obscn	frameshift deletion	"Obscn:NM_001171512:exon21:c.6394delG:p.A2132Lfs*30,Obscn:NM_199152:exon23:c.7021delG:p.A2341Lfs*30"	11qB1.3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.228384992	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr11	60778421	PW2017tail	colon	sgMsh2	60778421	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	192	0	0	NA	exonic	Smcr8	nonsynonymous SNV	"Smcr8:NM_001085440:exon1:c.G394A:p.A132T,Smcr8:NM_175491:exon1:c.G394A:p.A132T"	11qB2	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	3	0.978994	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	61070213	PW2017tail	colon	sgMsh2	61070213	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	143	0	0	NA	exonic	Kcnj12	nonsynonymous SNV	"Kcnj12:NM_001267593:exon2:c.C1030T:p.H344Y,Kcnj12:NM_010603:exon3:c.C1336T:p.H446Y"	11qB2	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.4045677	1	0.9521107	ACA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	67034118	PW2017tail	colon	sgMsh2	67034118	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.101	135	0	0	NA	exonic	Tmem220	synonymous SNV	"Tmem220:NM_001291042:exon6:c.T378C:p.G126G,Tmem220:NM_177392:exon7:c.T450C:p.G150G"	11qB3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.329526917	2	0.6467989	GTG	synonymous	GGT	8	GGTGGTGG	NA
PW2017T2	chr11	67090854	PW2017tail	colon	sgMsh2	67090854	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	267	0	0	NA	exonic	Myh3	synonymous SNV	Myh3:NM_001099635:exon20:c.G2268A:p.Q756Q	11qB3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.336052202	2	0.6792444	AGT	synonymous	CA	8	CACACACA	NA
PW2017T2	chr11	67191636	PW2017tail	colon	sgMsh2	67191636	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	142	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon30:c.G4031A:p.R1344H	11qB3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.567699837	1	0.9999801	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	67192982	PW2017tail	colon	sgMsh2	67192982	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	444	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon33:c.C4585T:p.R1529C	11qB3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.110929853	3	0.9999978	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	68990253	PW2017tail	colon	sgMsh2	68990253	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	114	0	0	NA	exonic	Pfas	nonsynonymous SNV	Pfas:NM_001159519:exon25:c.G3181A:p.V1061I	11qB3	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.23817292	2	0.9570785	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	78360938	PW2017tail	colon	sgMsh2	78360938	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.113	98	0	0	NA	exonic	Foxn1	frameshift insertion	"Foxn1:NM_001277290:exon8:c.1462dupC:p.Q488Pfs*19,Foxn1:NM_008238:exon8:c.1465dupC:p.Q489Pfs*19"	11qB5	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.36867863	NA	NA	CTG	frameshift	G	5	GGGGG	1
PW2017T2	chr11	80640370	PW2017tail	colon	sgMsh2	80640370	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.119	107	0	0	NA	exonic	Myo1d	nonsynonymous SNV	Myo1d:NM_177390:exon15:c.C1762T:p.R588C	11qB5	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.388254486	1	0.8432092	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	82982665	PW2017tail	colon	sgMsh2	82982665	-	G	Insertion	Strelka2;Vardict	2	0.0629	159	0	0	NA	exonic	Slfn9	frameshift insertion	Slfn9:NM_172796:exon4:c.1410dupC:p.I471Hfs*10	11qC	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.205220228	NA	NA	ATG	frameshift	G	5	GGGGG	1
PW2017T2	chr11	87402608	PW2017tail	colon	sgMsh2	87402608	T	-	Deletion	Mutect2;Vardict	2	0.04	181	0	0	NA	exonic	Rad51c	frameshift deletion	"Rad51c:NM_001291440:exon2:c.421delA:p.T141Hfs*8,Rad51c:NM_053269:exon2:c.367delA:p.T123Hfs*8"	11qC	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr11	97173136	PW2017tail	colon	sgMsh2	97173136	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	173	0	0	NA	exonic	Kpnb1	stopgain	Kpnb1:NM_008379:exon10:c.C1141T:p.R381X	11qD	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.384991843	1	0.9196354	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	101337488	PW2017tail	colon	sgMsh2	101337488	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	114	0	0	NA	exonic	Aoc3	nonsynonymous SNV	Aoc3:NM_009675:exon4:c.C2120T:p.P707L	11qD	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.189233279	2	0.7152348	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr11	106319989	PW2017tail	colon	sgMsh2	106319989	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	116	0	0	NA	exonic	Scn4a	nonsynonymous SNV	Scn4a:NM_133199:exon24:c.G5201A:p.R1734H	11qE1	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.584013051	1	0.9999261	GCG	nonsynonymous	GGC	8	GGCGGCGG	NA
PW2017T2	chr11	106685154	PW2017tail	colon	sgMsh2	106685154	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	198	0	0	NA	exonic	Pecam1	synonymous SNV	"Pecam1:NM_001305158:exon7:c.G1251A:p.T417T,Pecam1:NM_001032378:exon8:c.G1554A:p.T518T,Pecam1:NM_001305157:exon8:c.G1554A:p.T518T,Pecam1:NM_008816:exon8:c.G1554A:p.T518T"	11qE1	chr11-3133205-121238400	2	1	1	0.613	2	NON-ABERRANT	1	0.430668842	1	0.997087	TCG	synonymous	NA	NA	NA	NA
PW2017T2	chr12	30005832	PW2017tail	colon	sgMsh2	30005832	G	A	SNV	Mutect2;Vardict	2	0.042	98	0	0	NA	exonic	Pxdn	nonsynonymous SNV	Pxdn:NM_181395:exon18:c.G3716A:p.R1239H	12qA2	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.137030995	3	0.8418417	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	52516795	PW2017tail	colon	sgMsh2	52516795	T	-	Deletion	Mutect2;Vardict	2	0.027	262	0	0	NA	exonic	Arhgap5	frameshift deletion	Arhgap5:NM_009706:exon1:c.548delT:p.F184Lfs*10	12qC1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr12	65158831	PW2017tail	colon	sgMsh2	65158831	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.146	137	0	0	NA	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon3:c.566delA:p.N189Mfs*11	12qC1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.47634584	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr12	66655266	PW2017tail	colon	sgMsh2	66655266	A	G	SNV	Mutect2;Vardict	2	0.024	226	0	0	NA	exonic	Mdga2	nonsynonymous SNV	"Mdga2:NM_001193266:exon7:c.T1160C:p.V387A,Mdga2:NM_207010:exon7:c.T1160C:p.V387A"	12qC2	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.078303426	3	0.9999628	AAC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	76059521	PW2017tail	colon	sgMsh2	76059521	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	106	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon91:c.16656delA:p.T5554Hfs*4	12qC3	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.535073409	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr12	79186426	PW2017tail	colon	sgMsh2	79186426	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	262	0	0	NA	exonic	Rdh11	nonsynonymous SNV	"Rdh11:NM_001362270:exon3:c.G52A:p.V18I,Rdh11:NM_001362269:exon4:c.G385A:p.V129I,Rdh11:NM_021557:exon4:c.G433A:p.V145I"	12qC3	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.114192496	3	0.9993157	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	84329888	PW2017tail	colon	sgMsh2	84329888	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	149	0	0	NA	exonic	Zfp410	nonsynonymous SNV	"Zfp410:NM_001252582:exon6:c.G667A:p.V223I,Zfp410:NM_001252583:exon6:c.G667A:p.V223I,Zfp410:NM_144833:exon6:c.G667A:p.V223I"	12qD1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.140293638	3	0.0921238	AGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	91567737	PW2017tail	colon	sgMsh2	91567737	C	T	SNV	Mutect2;Vardict	2	0.039	147	0	0	NA	exonic	Gtf2a1	nonsynonymous SNV	"Gtf2a1:NM_031391:exon7:c.G742A:p.A248T,Gtf2a1:NM_175335:exon7:c.G625A:p.A209T"	12qD3	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.127243067	3	0.9601554	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	101044536	PW2017tail	colon	sgMsh2	101044536	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	201	0	0	NA	exonic	Ppp4r3a	nonsynonymous SNV	"Ppp4r3a:NM_001160214:exon11:c.A1784G:p.N595S,Ppp4r3a:NM_211355:exon11:c.A1745G:p.N582S"	12qE	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.257748777	2	0.9969284	ATT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr12	102899469	PW2017tail	colon	sgMsh2	102899469	A	-	Deletion	Strelka2;Vardict	2	0.1154	78	0	0	NA	exonic	Cox8c	frameshift deletion	Cox8c:NM_001039049:exon1:c.104delA:p.I38Sfs*25	12qE	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.376508972	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW2017T2	chr12	112177851	PW2017tail	colon	sgMsh2	112177851	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	59	0	0	NA	exonic	Kif26a	nonsynonymous SNV	Kif26a:NM_001097621:exon12:c.C4538A:p.P1513H	12qF1	chr12-3237715-119173220	2	1	1	0.613	2	NON-ABERRANT	1	0.499184339	1	0.9613428	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr13	4194726	PW2017tail	colon	sgMsh2	4194726	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	206	0	0	NA	exonic	Akr1c13	nonsynonymous SNV	Akr1c13:NM_013778:exon3:c.A302G:p.K101R	13qA1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9983171	AAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr13	11568553	PW2017tail	colon	sgMsh2	11568553	A	-	Deletion	Strelka2;Vardict	2	0.1983	116	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon99:c.14214delT:p.F4738Lfs*14	13qA1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.646982055	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW2017T2	chr13	55296186	PW2017tail	colon	sgMsh2	55296186	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.146	108	0	0	NA	exonic	Nsd1	frameshift deletion	Nsd1:NM_008739:exon16:c.5506delA:p.A1838Lfs*11	13qB1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.47634584	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr13	70604808	PW2017tail	colon	sgMsh2	70604808	G	T	SNV	Mutect2;Vardict	2	0.053	75	0	0	NA	exonic	Ice1	nonsynonymous SNV	Ice1:NM_144837:exon13:c.C3158A:p.A1053D	13qC1	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.172920065	2	0.007076473	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr13	94471837	PW2017tail	colon	sgMsh2	94471837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	164	0	0	NA	exonic	Ap3b1	synonymous SNV	Ap3b1:NM_009680:exon16:c.G1815A:p.A605A	13qC3	chr13-3556909-119495179	2	1	1	0.613	2	NON-ABERRANT	1	0.365415987	1	0.7737203	CGC	synonymous	NA	NA	NA	NA
PW2017T2	chr14	20765974	PW2017tail	colon	sgMsh2	20765974	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	87	0	0	NA	exonic	Camk2g	nonsynonymous SNV	"Camk2g:NM_001039138:exon7:c.C455T:p.A152V,Camk2g:NM_001039139:exon7:c.C455T:p.A152V,Camk2g:NM_001360186:exon7:c.C455T:p.A152V,Camk2g:NM_178597:exon7:c.C455T:p.A152V"	14qA3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.433931485	1	0.9395317	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	23436016	PW2017tail	colon	sgMsh2	23436016	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.18	74	0	0	NA	exonic	Kcnma1	frameshift deletion	"Kcnma1:NM_001253373:exon17:c.1870delT:p.Y624Tfs*30,Kcnma1:NM_001253374:exon17:c.1864delT:p.Y622Tfs*22,Kcnma1:NM_001253358:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253359:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253360:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253364:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253365:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253366:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253367:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253370:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253371:exon18:c.2026delT:p.Y676Tfs*22,Kcnma1:NM_001253372:exon18:c.2026delT:p.Y676Tfs*70,Kcnma1:NM_001253375:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253376:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253377:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_001253378:exon18:c.2026delT:p.Y676Tfs*41,Kcnma1:NM_010610:exon18:c.2026delT:p.Y676Tfs*30,Kcnma1:NM_001253361:exon19:c.2038delT:p.Y680Tfs*22,Kcnma1:NM_001253362:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253363:exon19:c.2038delT:p.Y680Tfs*30,Kcnma1:NM_001253368:exon19:c.2038delT:p.Y680Tfs*70,Kcnma1:NM_001253369:exon19:c.2038delT:p.Y680Tfs*41"	14qA3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.587275693	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr14	27486602	PW2017tail	colon	sgMsh2	27486602	T	-	Deletion	Mutect2;Vardict	2	0.087	196	0	0	NA	exonic	Ccdc66	frameshift deletion	Ccdc66:NM_177111:exon14:c.2162delA:p.K721Rfs*10	14qA3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr14	29062528	PW2017tail	colon	sgMsh2	29062528	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	141	0	0	NA	exonic	Cacna2d3	synonymous SNV	Cacna2d3:NM_009785:exon21:c.G1857A:p.A619A	14qA3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.30995106	2	0.8283895	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr14	31295681	PW2017tail	colon	sgMsh2	31295681	C	-	Deletion	Strelka2;Vardict	2	0.0588	85	0	0	NA	exonic	Dnah1	frameshift deletion	Dnah1:NM_001033668:exon27:c.4392delG:p.K1465Sfs*23	14qB	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.191843393	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr14	37079723	PW2017tail	colon	sgMsh2	37079723	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	121	0	0	NA	exonic	Cdhr1	nonsynonymous SNV	Cdhr1:NM_130878:exon17:c.A2262G:p.I754M	14qB	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.339314845	2	0.5312694	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	50453766	PW2017tail	colon	sgMsh2	50453766	A	-	Deletion	Mutect2;Vardict	2	0.03	370	0	0	NA	exonic	Olfr740	frameshift deletion	Olfr740:NM_146667:exon1:c.713delA:p.K240Rfs*11	14qC1	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr14	54281984	PW2017tail	colon	sgMsh2	54281984	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	155	0	0	NA	exonic	Olfr49	nonsynonymous SNV	Olfr49:NM_010991:exon1:c.G910A:p.V304I	14qC2	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	2	0.632998	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	55498367	PW2017tail	colon	sgMsh2	55498367	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	51	0	0	NA	exonic	Carmil3	nonsynonymous SNV	"Carmil3:NM_001024645:exon21:c.C1775T:p.A592V,Carmil3:NM_001374103:exon21:c.C1775T:p.A592V,Carmil3:NM_001374104:exon21:c.C1775T:p.A592V,Carmil3:NM_001374105:exon21:c.C1775T:p.A592V"	14qC3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.502446982	1	0.9455306	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	63919378	PW2017tail	colon	sgMsh2	63919378	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.162	44	0	0	NA	exonic	Pinx1	nonsynonymous SNV	Pinx1:NM_028228:exon7:c.G753T:p.R251S	14qD1	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.528548124	1	0.9464392	GGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	64027790	PW2017tail	colon	sgMsh2	64027790	G	T	SNV	Mutect2;Vardict	2	0.049	90	0	0	NA	exonic	Rp1l1	nonsynonymous SNV	Rp1l1:NM_146246:exon4:c.G824T:p.R275M	14qD1	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.159869494	3	0.6331236	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	66174772	PW2017tail	colon	sgMsh2	66174772	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	76	0	0	NA	exonic	Ptk2b	nonsynonymous SNV	"Ptk2b:NM_001162365:exon13:c.A1169G:p.H390R,Ptk2b:NM_001162366:exon13:c.A1169G:p.H390R,Ptk2b:NM_001360233:exon13:c.A1169G:p.H390R,Ptk2b:NM_172498:exon13:c.A1169G:p.H390R"	14qD1	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.185970636	2	0.6118707	GTG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	68647691	PW2017tail	colon	sgMsh2	68647691	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	337	0	0	NA	exonic	Adam28	nonsynonymous SNV	"Adam28:NM_001048175:exon3:c.C209T:p.A70V,Adam28:NM_010082:exon3:c.C209T:p.A70V,Adam28:NM_183366:exon3:c.C209T:p.A70V"	14qD1	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.192495922	2	0.9662233	AGC	nonsynonymous	ACAGC	11	ACAGCACAGCA	NA
PW2017T2	chr14	72556220	PW2017tail	colon	sgMsh2	72556220	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	192	0	0	NA	exonic	Fndc3a	nonsynonymous SNV	Fndc3a:NM_207636:exon23:c.G2914A:p.G972R	14qD2	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.339314845	2	0.57091	CCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr14	77582511	PW2017tail	colon	sgMsh2	77582511	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	82	0	0	NA	exonic	Enox1	synonymous SNV	"Enox1:NM_001253759:exon10:c.C705T:p.R235R,Enox1:NM_172813:exon10:c.C705T:p.R235R"	14qD3	chr14-3072210-123348696	2	1	1	0.613	2	NON-ABERRANT	1	0.551386623	1	0.9971588	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr15	8247081	PW2017tail	colon	sgMsh2	8247081	T	C	SNV	Mutect2;Vardict	2	0.139	34	0	0	NA	exonic	Cplane1	synonymous SNV	Cplane1:NM_001162906:exon43:c.T8208C:p.C2736C	15qA1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.453507341	1	0.7986103	GTC	synonymous	C	5	CCCCC	NA
PW2017T2	chr15	11036049	PW2017tail	colon	sgMsh2	11036049	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	171	0	0	NA	exonic	Rxfp3	synonymous SNV	Rxfp3:NM_178717:exon1:c.G1236A:p.S412S	15qA1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.486133768	1	0.9997457	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr15	11391868	PW2017tail	colon	sgMsh2	11391868	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	131	0	0	NA	exonic	Tars	synonymous SNV	Tars:NM_033074:exon8:c.C780T:p.C260C	15qA1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.182707993	2	0.6590069	GGC	synonymous	NA	NA	NA	NA
PW2017T2	chr15	23410791	PW2017tail	colon	sgMsh2	23410791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	186	0	0	NA	exonic	Cdh18	nonsynonymous SNV	Cdh18:NM_001081299:exon8:c.A1361G:p.Y454C	15qA2	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.339314845	2	0.5675892	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	30806699	PW2017tail	colon	sgMsh2	30806699	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	47	0	0	NA	exonic	Ctnnd2	nonsynonymous SNV	"Ctnnd2:NM_001355502:exon11:c.G1763T:p.G588V,Ctnnd2:NM_008729:exon11:c.G1763T:p.G588V"	15qB2	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.567699837	1	0.9754494	GGA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	34470706	PW2017tail	colon	sgMsh2	34470706	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	165	0	0	NA	exonic	Erich5	nonsynonymous SNV	Erich5:NM_173421:exon2:c.C80T:p.S27F	15qB3.1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.456769984	1	0.9982534	TCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	39437725	PW2017tail	colon	sgMsh2	39437725	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	107	0	0	NA	exonic	Rims2	nonsynonymous SNV	"Rims2:NM_001256382:exon4:c.C1427T:p.T476I,Rims2:NM_001256383:exon4:c.C1427T:p.T476I,Rims2:NM_053271:exon6:c.C1547T:p.T516I"	15qB3.1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.427406199	1	0.9570219	ACC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	39872545	PW2017tail	colon	sgMsh2	39872545	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	96	0	0	NA	exonic	Lrp12	nonsynonymous SNV	"Lrp12:NM_001347036:exon6:c.A1990G:p.T664A,Lrp12:NM_172814:exon7:c.A2047G:p.T683A"	15qB3.1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.215334421	2	0.866344	GTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	54839440	PW2017tail	colon	sgMsh2	54839440	G	T	SNV	Mutect2;Vardict	2	0.04	105	0	0	NA	exonic	Enpp2	synonymous SNV	"Enpp2:NM_015744:exon25:c.C2515A:p.R839R,Enpp2:NM_001136077:exon26:c.C2671A:p.R891R,Enpp2:NM_001285994:exon26:c.C2590A:p.R864R,Enpp2:NM_001285995:exon26:c.C2659A:p.R887R"	15qD1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	3	0.8927578	CGG	synonymous	NA	NA	NA	NA
PW2017T2	chr15	75917239	PW2017tail	colon	sgMsh2	75917239	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	102	0	0	NA	exonic	Pycrl	synonymous SNV	Pycrl:NM_025412:exon5:c.C640T:p.L214L	15qD3	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.349102773	1	7.40E-05	AGC	synonymous	NA	NA	NA	NA
PW2017T2	chr15	76233588	PW2017tail	colon	sgMsh2	76233588	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	95	0	0	NA	exonic	Parp10	nonsynonymous SNV	"Parp10:NM_001163576:exon10:c.G2597A:p.G866D,Parp10:NM_001163575:exon11:c.G2597A:p.G866D"	15qD3	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.414355628	1	0.9130288	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	85816774	PW2017tail	colon	sgMsh2	85816774	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	196	0	0	NA	exonic	Pkdrej	nonsynonymous SNV	Pkdrej:NM_011105:exon1:c.C4960A:p.L1654I	15qE2	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.163132137	3	0.6984314	AGG	nonsynonymous	GGAA	8	GGAAGGAA	NA
PW2017T2	chr15	89352416	PW2017tail	colon	sgMsh2	89352416	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	103	0	0	NA	exonic	Lmf2	nonsynonymous SNV	Lmf2:NM_178919:exon11:c.A1546G:p.T516A	15qE3	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.499184339	1	0.9959303	GTA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr15	98815723	PW2017tail	colon	sgMsh2	98815723	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.14	213	0	0	NA	exonic	Prkag1	frameshift deletion	Prkag1:NM_016781:exon4:c.183delT:p.F61Lfs*3	15qF1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.456769984	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr15	101202988	PW2017tail	colon	sgMsh2	101202988	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.368	87	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon6:c.1030delA:p.N346Mfs*21	15qF1	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.600326264	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr15	103205499	PW2017tail	colon	sgMsh2	103205499	T	-	Deletion	Strelka2;Vardict	2	0.1169	77	0	0	NA	exonic	Cbx5	frameshift deletion	"Cbx5:NM_001076789:exon3:c.317delA:p.K106Rfs*30,Cbx5:NM_001358950:exon3:c.317delA:p.K106Rfs*30,Cbx5:NM_007626:exon3:c.317delA:p.K106Rfs*30,Cbx5:NM_001110216:exon4:c.317delA:p.K106Rfs*30"	15qF3	chr15-3280572-103525164	2	1	1	0.613	2	NON-ABERRANT	1	0.381402936	NA	NA	CTT	frameshift	CT	8	CTCTCTCT	-1
PW2017T2	chr16	5076913	PW2017tail	colon	sgMsh2	5076913	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.125	134	0	0	NA	exonic	Ubn1	frameshift deletion	"Ubn1:NM_001356320:exon15:c.1822delA:p.V610Ffs*22,Ubn1:NM_026666:exon16:c.1822delA:p.V610Ffs*22"	16qA1	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.407830343	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr16	10284462	PW2017tail	colon	sgMsh2	10284462	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	88	0	0	NA	exonic	Emp2	nonsynonymous SNV	Emp2:NM_007929:exon5:c.G485A:p.G162D	16qA1	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	1	0.607219	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	29648982	PW2017tail	colon	sgMsh2	29648982	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	68	0	0	NA	exonic	Opa1	nonsynonymous SNV	"Opa1:NM_133752:exon28:c.C2864A:p.A955D,Opa1:NM_001199177:exon29:c.C2918A:p.A973D"	16qB2	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.267536705	2	0.8097904	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	34198453	PW2017tail	colon	sgMsh2	34198453	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	159	0	0	NA	exonic	Kalrn	nonsynonymous SNV	"Kalrn:NM_001164268:exon25:c.T3938A:p.I1313N,Kalrn:NM_177357:exon25:c.T3938A:p.I1313N"	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.123980424	3	0.9755993	GAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	37383540	PW2017tail	colon	sgMsh2	37383540	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	69	0	0	NA	exonic	Stxbp5l	nonsynonymous SNV	"Stxbp5l:NM_001114611:exon2:c.T158C:p.L53P,Stxbp5l:NM_001114612:exon2:c.T158C:p.L53P,Stxbp5l:NM_001114613:exon2:c.T158C:p.L53P,Stxbp5l:NM_172440:exon2:c.T158C:p.L53P"	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.427406199	1	0.8862876	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	37570405	PW2017tail	colon	sgMsh2	37570405	T	-	Deletion	Mutect2;Vardict	2	0.044	257	0	0	NA	exonic	Rabl3	frameshift deletion	Rabl3:NM_001042499:exon7:c.624delT:p.F210Lfs*20	16qB3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr16	44432147	PW2017tail	colon	sgMsh2	44432147	T	-	Deletion	Mutect2;Vardict	2	0.044	161	0	0	NA	exonic	Cfap44	frameshift deletion	Cfap44:NM_001033247:exon19:c.2618delT:p.S875Lfs*48	16qB4	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr16	64785304	PW2017tail	colon	sgMsh2	64785304	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.069	177	0	0	NA	exonic	Zfp654	nonsynonymous SNV	Zfp654:NM_001347245:exon8:c.A2534C:p.E845A	16qC1.3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	2	0.9884699	CTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	81615760	PW2017tail	colon	sgMsh2	81615760	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	155	0	0	NA	exonic	Ncam2	nonsynonymous SNV	Ncam2:NM_001113208:exon16:c.T2135C:p.L712P	16qC3.3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.349102773	1	7.71E-07	CTT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	85868161	PW2017tail	colon	sgMsh2	85868161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.198	90	0	0	NA	exonic	Adamts5	synonymous SNV	Adamts5:NM_011782:exon6:c.C1914T:p.G638G	16qC3.3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.646003263	1	0.9999091	AGC	synonymous	NA	NA	NA	NA
PW2017T2	chr16	90754988	PW2017tail	colon	sgMsh2	90754988	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	110	0	0	NA	exonic	Urb1	nonsynonymous SNV	Urb1:NM_029497:exon37:c.C5863T:p.R1955W	16qC3.3	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	3	0.09807772	CGA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr16	94412095	PW2017tail	colon	sgMsh2	94412095	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	149	0	0	NA	exonic	Ttc3	nonsynonymous SNV	Ttc3:NM_009441:exon15:c.C1269G:p.D423E	16qC4	chr16-3948854-97453880	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	3	0.8863217	ACT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	20846848	PW2017tail	colon	sgMsh2	20846848	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.059	211	0	0	NA	exonic	Vmn1r230	frameshift deletion	Vmn1r230:NM_134197:exon1:c.298delT:p.F101Lfs*4	17qA3.2	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.192495922	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr17	32198120	PW2017tail	colon	sgMsh2	32198120	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.173	22	0	0	NA	exonic	Brd4	frameshift deletion	"Brd4:NM_001286630:exon19:c.4048delC:p.Q1350Rfs*36,Brd4:NM_020508:exon19:c.4045delC:p.Q1349Rfs*36"	17qB1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.564437194	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr17	35140452	PW2017tail	colon	sgMsh2	35140452	G	A	SNV	Mutect2;Vardict	2	0.086	51	0	0	NA	exonic	Bag6	nonsynonymous SNV	"Bag6:NM_001252468:exon6:c.G718A:p.A240T,Bag6:NM_001252469:exon6:c.G718A:p.A240T,Bag6:NM_001372262:exon6:c.G718A:p.A240T,Bag6:NM_001372279:exon6:c.G718A:p.A240T,Bag6:NM_001372280:exon6:c.G718A:p.A240T,Bag6:NM_001372281:exon6:c.G718A:p.A240T,Bag6:NM_001372282:exon6:c.G718A:p.A240T,Bag6:NM_001372283:exon6:c.G718A:p.A240T,Bag6:NM_001372289:exon6:c.G718A:p.A240T,Bag6:NM_001372290:exon6:c.G718A:p.A240T,Bag6:NM_001372260:exon7:c.G772A:p.A258T,Bag6:NM_001372261:exon7:c.G772A:p.A258T,Bag6:NM_001372265:exon7:c.G772A:p.A258T,Bag6:NM_001372266:exon7:c.G772A:p.A258T,Bag6:NM_001372267:exon7:c.G772A:p.A258T,Bag6:NM_001372268:exon7:c.G772A:p.A258T,Bag6:NM_001372269:exon7:c.G772A:p.A258T,Bag6:NM_001372270:exon7:c.G772A:p.A258T,Bag6:NM_001372271:exon7:c.G772A:p.A258T,Bag6:NM_001372272:exon7:c.G772A:p.A258T,Bag6:NM_001372273:exon7:c.G772A:p.A258T,Bag6:NM_001372274:exon7:c.G772A:p.A258T,Bag6:NM_001372275:exon7:c.G772A:p.A258T,Bag6:NM_001372276:exon7:c.G772A:p.A258T,Bag6:NM_001372277:exon7:c.G772A:p.A258T,Bag6:NM_001372278:exon7:c.G772A:p.A258T,Bag6:NM_001372284:exon7:c.G772A:p.A258T,Bag6:NM_001372285:exon7:c.G772A:p.A258T,Bag6:NM_001372286:exon7:c.G772A:p.A258T,Bag6:NM_001372287:exon7:c.G772A:p.A258T,Bag6:NM_001372288:exon7:c.G772A:p.A258T,Bag6:NM_001372291:exon7:c.G772A:p.A258T,Bag6:NM_057171:exon7:c.G772A:p.A258T"	17qB1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.280587276	2	0.6916944	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	37575000	PW2017tail	colon	sgMsh2	37575000	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	451	0	0	NA	exonic	Olfr113	nonsynonymous SNV	Olfr113:NM_146289:exon1:c.G422A:p.C141Y	17qB1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.117455139	3	0.9999925	ACA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	37660037	PW2017tail	colon	sgMsh2	37660037	G	A	SNV	Mutect2;MuSe;Vardict	3	0.097	234	0	0	NA	exonic	Olfr117	stopgain	Olfr117:NM_207155:exon1:c.C295T:p.Q99X	17qB1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.316476346	2	0.8996106	TGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	43624618	PW2017tail	colon	sgMsh2	43624618	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	152	0	0	NA	exonic	Tdrd6	synonymous SNV	"Tdrd6:NM_001161366:exon1:c.C5538T:p.D1846D,Tdrd6:NM_001161367:exon1:c.C5538T:p.D1846D,Tdrd6:NM_198418:exon1:c.C5538T:p.D1846D,Tdrd6:NM_001357985:exon2:c.C4959T:p.D1653D"	17qB3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.117455139	3	0.9821152	CGT	synonymous	NA	NA	NA	NA
PW2017T2	chr17	45547054	PW2017tail	colon	sgMsh2	45547054	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	103	0	0	NA	exonic	Tmem151b	nonsynonymous SNV	Tmem151b:NM_001013749:exon2:c.G265A:p.A89T	17qB3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.205546493	2	0.8320639	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	47904427	PW2017tail	colon	sgMsh2	47904427	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	32	0	0	NA	exonic	Foxp4	nonsynonymous SNV	"Foxp4:NM_001110824:exon2:c.G91T:p.G31C,Foxp4:NM_001110825:exon2:c.G91T:p.G31C,Foxp4:NM_028767:exon2:c.G91T:p.G31C"	17qC	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.319738989	2	0.05367196	CCG	nonsynonymous	CCG	8	CCGCCGCC	NA
PW2017T2	chr17	64752541	PW2017tail	colon	sgMsh2	64752541	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	167	0	0	NA	exonic	Man2a1	nonsynonymous SNV	Man2a1:NM_008549:exon22:c.G3422A:p.S1141N	17qE1.1	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9944286	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	68461495	PW2017tail	colon	sgMsh2	68461495	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.032	236	0	0	NA	exonic	L3mbtl4	nonsynonymous SNV	L3mbtl4:NM_177278:exon9:c.G597T:p.E199D	17qE1.2	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.104404568	3	0.9995384	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	78855244	PW2017tail	colon	sgMsh2	78855244	T	-	Deletion	Mutect2;Vardict	2	0.088	116	0	0	NA	exonic	Eif2ak2	frameshift deletion	Eif2ak2:NM_011163:exon16:c.1443delA:p.K481Nfs*16	17qE3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.287112561	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr17	80275319	PW2017tail	colon	sgMsh2	80275319	A	G	SNV	Mutect2;Vardict	2	0.028	155	0	0	NA	exonic	Dhx57	nonsynonymous SNV	"Dhx57:NM_198942:exon4:c.T697C:p.C233R,Dhx57:NM_001163759:exon5:c.T856C:p.C286R"	17qE3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.091353997	3	0.997608	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr17	80406950	PW2017tail	colon	sgMsh2	80406950	T	-	Deletion	Strelka2;Vardict	2	0.0534	131	0	0	NA	exonic	Sos1	frameshift deletion	Sos1:NM_009231:exon20:c.3090delA:p.K1030Nfs*5	17qE3	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.174225122	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr17	83425299	PW2017tail	colon	sgMsh2	83425299	A	-	Deletion	Strelka2;Vardict	2	0.2105	38	0	0	NA	exonic	Eml4	frameshift deletion	"Eml4:NM_001114361:exon4:c.380delA:p.E130Rfs*26,Eml4:NM_001379373:exon4:c.380delA:p.E130Rfs*26"	17qE4	chr17-3170973-94747584	2	1	1	0.613	2	NON-ABERRANT	1	0.686786297	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr18	34312304	PW2017tail	colon	sgMsh2	34312304	-	C	Insertion	Strelka2;Vardict	2	0.3061	98	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-3325290-89104078	2	1	1	0.613	2	NON-ABERRANT	1	0.998694943	NA	NA	CAC	frameshift	NA	NA	NA	1
PW2017T2	chr18	34312618	PW2017tail	colon	sgMsh2	34312618	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	163	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.A2389G:p.I797V,Apc:NM_007462:exon16:c.A2566G:p.I856V,Apc:NM_001360980:exon17:c.A2620G:p.I874V"	18qB1	chr18-3325290-89104078	2	1	1	0.613	2	NON-ABERRANT	1	0.228384992	2	0.9864009	TAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr18	37676196	PW2017tail	colon	sgMsh2	37676196	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	239	0	0	NA	exonic	Pcdhga3	synonymous SNV	Pcdhga3:NM_033586:exon1:c.C1701T:p.D567D	18qB3	chr18-3325290-89104078	2	1	1	0.613	2	NON-ABERRANT	1	0.505709625	1	0.9999979	ACG	synonymous	NA	NA	NA	NA
PW2017T2	chr18	56739906	PW2017tail	colon	sgMsh2	56739906	G	C	SNV	Mutect2;Vardict	2	0.04	109	0	0	NA	exonic	Lmnb1	nonsynonymous SNV	Lmnb1:NM_010721:exon6:c.G1028C:p.R343T	18qD3	chr18-3325290-89104078	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	3	0.09984217	AGA	nonsynonymous	AG	13	AGAGAGAGAGAGA	NA
PW2017T2	chr18	61003362	PW2017tail	colon	sgMsh2	61003362	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	77	0	0	NA	exonic	Slc6a7	synonymous SNV	Slc6a7:NM_201353:exon8:c.C966T:p.D322D	18qE1	chr18-3325290-89104078	2	1	1	0.613	2	NON-ABERRANT	1	0.218597064	2	0.8170828	TGT	synonymous	NA	NA	NA	NA
PW2017T2	chr19	7432016	PW2017tail	colon	sgMsh2	7432016	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	234	0	0	NA	exonic	Rtn3	nonsynonymous SNV	"Rtn3:NM_053076:exon4:c.T512G:p.L171R,Rtn3:NM_001003933:exon5:c.T2636G:p.L879R,Rtn3:NM_001271487:exon5:c.T569G:p.L190R,Rtn3:NM_001003934:exon6:c.T2693G:p.L898R,Rtn3:NM_001271486:exon6:c.T1730G:p.L577R"	19qA	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	2	0.9974345	CAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr19	7494658	PW2017tail	colon	sgMsh2	7494658	G	A	SNV	Mutect2;Vardict	2	0.097	36	0	0	NA	exonic	Atl3	nonsynonymous SNV	Atl3:NM_146091:exon1:c.G43A:p.A15T	19qA	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.316476346	2	0.5282145	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr19	13585744	PW2017tail	colon	sgMsh2	13585744	T	C	SNV	Mutect2;Vardict	2	0.016	547	0	0	NA	exonic	Olfr1484	nonsynonymous SNV	Olfr1484:NM_146291:exon1:c.T439C:p.S147P	19qA	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.052202284	3	1.00E-09	ATC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr19	17118774	PW2017tail	colon	sgMsh2	17118774	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	105	0	0	NA	exonic	Prune2	synonymous SNV	Prune2:NM_181348:exon8:c.C1641A:p.S547S	19qB	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.375203915	1	8.18E-06	CCT	synonymous	NA	NA	NA	NA
PW2017T2	chr19	26649080	PW2017tail	colon	sgMsh2	26649080	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	83	0	0	NA	exonic	Smarca2	nonsynonymous SNV	Smarca2:NM_011416:exon7:c.C1303T:p.R435C	19qC1	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.261011419	2	0.09342177	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr19	42190405	PW2017tail	colon	sgMsh2	42190406	TG	-	Deletion	Strelka2;Vardict	2	0.0882	102	0	0	NA	exonic	Zfyve27	frameshift deletion	"Zfyve27:NM_001164531:exon12:c.1185_1186del:p.C399Rfs*23,Zfyve27:NM_177319:exon13:c.1206_1207del:p.C406Rfs*23"	19qC3	chr19-3904717-60850867	2	1	1	0.613	2	NON-ABERRANT	1	0.28776509	NA	NA	CTG	frameshift	TG	12	TGTGTGTGTGTG	-2
PW2017T2	chr2	13276799	PW2017tail	colon	sgMsh2	13276799	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	284	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon67:c.C10801T:p.R3601W	2qA1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.345840131	1	0.5337741	CGA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	29145392	PW2017tail	colon	sgMsh2	29145392	A	-	Deletion	Strelka2;Vardict	2	0.2315	108	0	0	NA	exonic	Setx	frameshift deletion	Setx:NM_198033:exon10:c.1888delA:p.N632Tfs*16	2qB	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.755301794	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr2	32725333	PW2017tail	colon	sgMsh2	32725333	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.178	98	0	0	NA	exonic	Sh2d3c	nonsynonymous SNV	Sh2d3c:NM_013781:exon2:c.G434A:p.R145K	2qB	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.580750408	1	0.9996479	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	48898564	PW2017tail	colon	sgMsh2	48898564	A	-	Deletion	Strelka2;Vardict	2	0.0945	201	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.308319739	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr2	62573451	PW2017tail	colon	sgMsh2	62573451	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.121	161	0	0	NA	exonic	Fap	nonsynonymous SNV	Fap:NM_007986:exon2:c.C79A:p.R27S	2qC1.3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.394779772	1	0.9433772	CGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	64930222	PW2017tail	colon	sgMsh2	64930222	T	-	Deletion	Strelka2;Vardict	2	0.1139	158	0	0	NA	exonic	Grb14	frameshift deletion	Grb14:NM_016719:exon7:c.885delA:p.K295Nfs*11	2qC1.3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.371615008	NA	NA	GTT	frameshift	T	10	TTTTTTTTTT	-1
PW2017T2	chr2	66540504	PW2017tail	colon	sgMsh2	66540504	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.089	98	0	0	NA	exonic	Scn9a	frameshift deletion	"Scn9a:NM_001290674:exon12:c.1731delT:p.F577Lfs*36,Scn9a:NM_001290675:exon12:c.1731delT:p.F577Lfs*36"	2qC1.3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.290375204	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr2	77903884	PW2017tail	colon	sgMsh2	77903884	C	T	SNV	Mutect2;Vardict	2	0.029	148	0	0	NA	exonic	Cwc22	synonymous SNV	"Cwc22:NM_001290740:exon19:c.G2070A:p.E690E,Cwc22:NM_001362657:exon19:c.G2070A:p.E690E,Cwc22:NM_001362658:exon19:c.G2067A:p.E689E,Cwc22:NM_001362664:exon19:c.G2067A:p.E689E,Cwc22:NM_172667:exon19:c.G2067A:p.E689E,Cwc22:NM_001362659:exon20:c.G2067A:p.E689E,Cwc22:NM_030560:exon20:c.G2067A:p.E689E"	2qC3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.094616639	3	0.9960497	TCT	synonymous	NA	NA	NA	NA
PW2017T2	chr2	77903899	PW2017tail	colon	sgMsh2	77903899	T	A	SNV	Mutect2;Vardict	2	0.036	172	0	0	NA	exonic	Cwc22	nonsynonymous SNV	"Cwc22:NM_001290740:exon19:c.A2055T:p.E685D,Cwc22:NM_001362657:exon19:c.A2055T:p.E685D,Cwc22:NM_001362658:exon19:c.A2052T:p.E684D,Cwc22:NM_001362664:exon19:c.A2052T:p.E684D,Cwc22:NM_172667:exon19:c.A2052T:p.E684D,Cwc22:NM_001362659:exon20:c.A2052T:p.E684D,Cwc22:NM_030560:exon20:c.A2052T:p.E684D"	2qC3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.117455139	3	0.9893066	ATT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	77920819	PW2017tail	colon	sgMsh2	77920819	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.09	109	0	0	NA	exonic	Cwc22	frameshift deletion	"Cwc22:NM_001290740:exon11:c.1206delA:p.E403Kfs*38,Cwc22:NM_001362657:exon11:c.1206delA:p.E403Kfs*38,Cwc22:NM_001362658:exon11:c.1203delA:p.E402Kfs*38,Cwc22:NM_001362664:exon11:c.1203delA:p.E402Kfs*39,Cwc22:NM_172667:exon11:c.1203delA:p.E402Kfs*38,Cwc22:NM_001362659:exon12:c.1203delA:p.E402Kfs*38,Cwc22:NM_030560:exon12:c.1203delA:p.E402Kfs*38"	2qC3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.293637847	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr2	82983092	PW2017tail	colon	sgMsh2	82983092	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	228	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.C9748G:p.P3250A	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	2	0.6946285	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	82990806	PW2017tail	colon	sgMsh2	82990806	C	-	Deletion	Mutect2;Vardict	2	0.043	298	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon17:c.16876delC:p.S5628Afs*1	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.140293638	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr2	83785444	PW2017tail	colon	sgMsh2	83785444	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	126	0	0	NA	exonic	Itgav	frameshift deletion	Itgav:NM_008402:exon17:c.1676delG:p.G561Dfs*47	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.283849918	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr2	86008144	PW2017tail	colon	sgMsh2	86008144	G	T	SNV	Mutect2;Vardict	2	0.025	682	0	0	NA	exonic	Olfr1032	nonsynonymous SNV	Olfr1032:NM_146579:exon1:c.G367T:p.A123S	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.081566069	3	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	87002310	PW2017tail	colon	sgMsh2	87002310	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	309	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.C340T:p.L114F	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.078303426	3	0.9999991	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	88005972	PW2017tail	colon	sgMsh2	88005972	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	294	0	0	NA	exonic	Olfr1160	nonsynonymous SNV	Olfr1160:NM_146649:exon1:c.C805T:p.R269C	2qD	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.267536705	2	0.9995337	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	88865165	PW2017tail	colon	sgMsh2	88865165	T	C	SNV	Mutect2;Vardict	2	0.018	425	0	0	NA	exonic	Olfr1206	nonsynonymous SNV	Olfr1206:NM_001001810:exon1:c.T559C:p.C187R	2qE1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.058727569	3	1.09E-09	CTG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	89493917	PW2017tail	colon	sgMsh2	89493917	T	G	SNV	Mutect2;Vardict	2	0.068	237	0	0	NA	exonic	Olfr1242	nonsynonymous SNV	Olfr1242:NM_146968:exon1:c.A394C:p.T132P	2qE1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.221859706	2	0.9966088	GTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	90282125	PW2017tail	colon	sgMsh2	90282125	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	444	0	0	NA	exonic	Olfr1272	frameshift deletion	Olfr1272:NM_146980:exon1:c.449delG:p.G150Afs*5	2qE1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.23817292	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr2	93863124	PW2017tail	colon	sgMsh2	93863124	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.153	112	0	0	NA	exonic	Accsl	synonymous SNV	"Accsl:NM_001363093:exon3:c.G72A:p.A24A,Accsl:NM_001033452:exon5:c.G747A:p.A249A,Accsl:NM_001363092:exon5:c.G591A:p.A197A"	2qE1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.499184339	1	0.9974467	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr2	118791389	PW2017tail	colon	sgMsh2	118791389	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	75	0	0	NA	exonic	Disp2	synonymous SNV	Disp2:NM_170593:exon8:c.C2601A:p.P867P	2qE5	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.189233279	2	0.6359558	CCT	synonymous	TACAG	10	TACAGTACAG	NA
PW2017T2	chr2	120079582	PW2017tail	colon	sgMsh2	120079582	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	100	0	0	NA	exonic	Sptbn5	nonsynonymous SNV	Sptbn5:NM_001370938:exon7:c.C1183T:p.R395C	2qE5	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.391517129	1	0.8445603	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	136101160	PW2017tail	colon	sgMsh2	136101160	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	231	0	0	NA	exonic	Pak7	synonymous SNV	"Pak7:NM_172858:exon5:c.C1059T:p.G353G,Pak7:NM_001360382:exon6:c.C1059T:p.G353G,Pak7:NM_001360384:exon6:c.C1059T:p.G353G"	2qF3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.075040783	3	0.9999793	GGC	synonymous	NA	NA	NA	NA
PW2017T2	chr2	145930558	PW2017tail	colon	sgMsh2	145930558	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	101	0	0	NA	exonic	Crnkl1	nonsynonymous SNV	Crnkl1:NM_025820:exon5:c.C598T:p.R200W	2qG1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.47634584	1	0.9901838	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	145973489	PW2017tail	colon	sgMsh2	145973489	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.085	154	0	0	NA	exonic	Cfap61	frameshift insertion	Cfap61:NM_001369121:exon8:c.718dupG:p.F241Vfs*17	2qG1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.277324633	NA	NA	TCG	frameshift	NA	NA	NA	1
PW2017T2	chr2	153399446	PW2017tail	colon	sgMsh2	153399446	G	-	Deletion	Strelka2;Vardict	2	0.2603	73	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.849265905	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW2017T2	chr2	155415806	PW2017tail	colon	sgMsh2	155415806	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	84	0	0	NA	exonic	Ncoa6	nonsynonymous SNV	"Ncoa6:NM_001242558:exon8:c.G1816T:p.G606W,Ncoa6:NM_019825:exon8:c.G1816T:p.G606W"	2qH1	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.296900489	2	0.7733962	CCA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr2	167963690	PW2017tail	colon	sgMsh2	167963690	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	127	0	0	NA	exonic	Ptpn1	nonsynonymous SNV	Ptpn1:NM_011201:exon2:c.C126A:p.N42K	2qH3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.296900489	2	0.876782	ACC	nonsynonymous	A	5	AAAAA	NA
PW2017T2	chr2	168182309	PW2017tail	colon	sgMsh2	168182309	T	-	Deletion	Strelka2;Vardict	2	0.1523	197	0	0	NA	exonic	Adnp	frameshift deletion	"Adnp:NM_001310088:exon3:c.2381delA:p.K794Rfs*10,Adnp:NM_009628:exon4:c.3065delA:p.K1022Rfs*10,Adnp:NM_001310086:exon5:c.3065delA:p.K1022Rfs*10"	2qH3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.496900489	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW2017T2	chr2	172472733	PW2017tail	colon	sgMsh2	172472733	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	121	0	0	NA	exonic	Fam209	nonsynonymous SNV	Fam209:NM_029608:exon1:c.G141T:p.Q47H	2qH3	chr2-4513773-181995339	2	1	1	0.613	2	NON-ABERRANT	1	0.600326264	1	0.9999747	AGA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	14499332	PW2017tail	colon	sgMsh2	14499332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	160	0	0	NA	exonic	Slc7a12	synonymous SNV	Slc7a12:NM_080852:exon3:c.A1077G:p.S359S	3qA1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.384991843	1	0.09403338	CAT	synonymous	NA	NA	NA	NA
PW2017T2	chr3	36671133	PW2017tail	colon	sgMsh2	36671133	G	A	SNV	Mutect2;Vardict	2	0.036	142	0	0	NA	exonic	Trpc3	synonymous SNV	Trpc3:NM_019510:exon2:c.C693T:p.H231H	3qB	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.117455139	3	0.9769089	AGT	synonymous	NA	NA	NA	NA
PW2017T2	chr3	37079900	PW2017tail	colon	sgMsh2	37079900	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	156	0	0	NA	exonic	Adad1	synonymous SNV	Adad1:NM_009350:exon7:c.G963A:p.R321R	3qB	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.407830343	1	0.9683475	GGT	synonymous	NA	NA	NA	NA
PW2017T2	chr3	64388644	PW2017tail	colon	sgMsh2	64388644	C	G	SNV	Mutect2;Vardict	2	0.028	208	0	0	NA	exonic	Vmn2r4	nonsynonymous SNV	"Vmn2r4:NM_001104615:exon5:c.G2452C:p.V818L,Vmn2r4:NM_001385080:exon6:c.G2725C:p.V909L"	3qE1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.091353997	3	0.999691	ACC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	76536262	PW2017tail	colon	sgMsh2	76536262	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	179	0	0	NA	exonic	Fstl5	nonsynonymous SNV	"Fstl5:NM_001253719:exon8:c.T913C:p.S305P,Fstl5:NM_178673:exon8:c.T913C:p.S305P"	3qE3	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.362153344	1	0.7558932	GTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	86351962	PW2017tail	colon	sgMsh2	86351962	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.152	156	0	0	NA	exonic	Lrba	frameshift deletion	"Lrba:NM_001077687:exon26:c.4283delA:p.N1430Ifs*17,Lrba:NM_001077688:exon26:c.4283delA:p.N1430Ifs*17,Lrba:NM_030695:exon26:c.4283delA:p.N1430Ifs*17"	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.495921697	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr3	87365900	PW2017tail	colon	sgMsh2	87365900	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	123	0	0	NA	exonic	Cd5l	nonsynonymous SNV	Cd5l:NM_009690:exon3:c.C175T:p.R59C	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.140293638	3	0.8694108	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	87913145	PW2017tail	colon	sgMsh2	87913145	T	-	Deletion	Strelka2;Vardict	2	0.0765	170	0	0	NA	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.24959217	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW2017T2	chr3	87932229	PW2017tail	colon	sgMsh2	87932229	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	194	0	0	NA	exonic	Isg20l2	nonsynonymous SNV	Isg20l2:NM_177663:exon2:c.A746G:p.K249R	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	3	0.9727836	AAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	89358699	PW2017tail	colon	sgMsh2	89358699	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.196	61	0	0	NA	exonic	Dcst1	nonsynonymous SNV	Dcst1:NM_029974:exon5:c.C478T:p.P160S	3qF1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.639477977	1	0.9980149	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	101018679	PW2017tail	colon	sgMsh2	101018679	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	87	0	0	NA	exonic	Cd101	synonymous SNV	Cd101:NM_001167906:exon3:c.C735T:p.G245G	3qF2.2	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.261011419	2	0.8936054	GGC	synonymous	NA	NA	NA	NA
PW2017T2	chr3	103761555	PW2017tail	colon	sgMsh2	103761555	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	119	0	0	NA	exonic	Hipk1	synonymous SNV	"Hipk1:NM_001301304:exon6:c.G1524A:p.T508T,Hipk1:NM_001301306:exon6:c.G1524A:p.T508T,Hipk1:NM_010432:exon6:c.G1524A:p.T508T"	3qF2.2	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.36867863	1	0.7435146	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr3	109166365	PW2017tail	colon	sgMsh2	109166365	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	99	0	0	NA	exonic	Slc25a24	frameshift deletion	Slc25a24:NM_172685:exon10:c.1283delT:p.Q430Sfs*20	3qF3	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.535073409	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr3	124321337	PW2017tail	colon	sgMsh2	124321337	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	103	0	0	NA	exonic	Tram1l1	nonsynonymous SNV	Tram1l1:NM_146140:exon1:c.G145A:p.A49T	3qG1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.212071778	2	0.009372444	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	141856491	PW2017tail	colon	sgMsh2	141856491	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	182	0	0	NA	exonic	Bmpr1b	nonsynonymous SNV	"Bmpr1b:NM_001277218:exon8:c.C934A:p.L312I,Bmpr1b:NM_001355043:exon8:c.C934A:p.L312I,Bmpr1b:NM_007560:exon8:c.C934A:p.L312I,Bmpr1b:NM_001277216:exon9:c.C934A:p.L312I,Bmpr1b:NM_001277217:exon9:c.C934A:p.L312I,Bmpr1b:NM_001277220:exon9:c.C901A:p.L301I"	3qH1	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	3	0.9240998	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr3	144968385	PW2017tail	colon	sgMsh2	144968385	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	224	0	0	NA	exonic	Clca4a	synonymous SNV	Clca4a:NM_207208:exon5:c.G588A:p.T196T	3qH2	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.101141925	3	0.9995214	TCG	synonymous	NA	NA	NA	NA
PW2017T2	chr3	148890495	PW2017tail	colon	sgMsh2	148890495	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	203	0	0	NA	exonic	Adgrl2	synonymous SNV	Adgrl2:NM_001081298:exon2:c.C204T:p.D68D	3qH3	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	3	0.9997276	CGT	synonymous	CGTC	10	CGTCCGTCCG	NA
PW2017T2	chr3	153937743	PW2017tail	colon	sgMsh2	153937743	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.057	240	0	0	NA	exonic	Acadm	frameshift deletion	Acadm:NM_007382:exon6:c.428delA:p.K143Rfs*6	3qH3	chr3-3792373-159911278	2	1	1	0.613	2	NON-ABERRANT	1	0.185970636	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr4	8859092	PW2017tail	colon	sgMsh2	8859092	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	152	0	0	NA	exonic	Chd7	nonsynonymous SNV	"Chd7:NM_001355382:exon33:c.G3476A:p.R1159K,Chd7:NM_001277149:exon34:c.G7181A:p.R2394K"	4qA1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.473083197	1	0.9987716	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	11713702	PW2017tail	colon	sgMsh2	11713702	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	129	0	0	NA	exonic	Gem	synonymous SNV	Gem:NM_010276:exon5:c.C837T:p.N279N	4qA1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.424143556	1	0.9725626	ACA	synonymous	NA	NA	NA	NA
PW2017T2	chr4	41094797	PW2017tail	colon	sgMsh2	41094797	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.086	66	0	0	NA	exonic	Aqp3	nonsynonymous SNV	Aqp3:NM_016689:exon3:c.C277A:p.L93M	4qA5	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.280587276	2	0.768738	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	43641624	PW2017tail	colon	sgMsh2	43641624	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	162	0	0	NA	exonic	Npr2	nonsynonymous SNV	"Npr2:NM_001355466:exon7:c.T1427C:p.L476P,Npr2:NM_173788:exon7:c.T1427C:p.L476P"	4qA5	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.675367047	1	1.29E-08	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	43835706	PW2017tail	colon	sgMsh2	43835706	C	T	SNV	Mutect2;Vardict	2	0.021	307	0	0	NA	exonic	Olfr157	synonymous SNV	Olfr157:NM_019475:exon1:c.G783A:p.K261K	4qB1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.068515498	3	0.9999998	GCT	synonymous	NA	NA	NA	NA
PW2017T2	chr4	46183125	PW2017tail	colon	sgMsh2	46183125	T	-	Deletion	Mutect2;Vardict	2	0.071	108	0	0	NA	exonic	Xpa	frameshift deletion	Xpa:NM_011728:exon5:c.663delA:p.V222fs*0	4qB1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.231647635	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr4	101181908	PW2017tail	colon	sgMsh2	101181908	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.183	127	0	0	NA	exonic	Jak1	synonymous SNV	"Jak1:NM_013567:exon6:c.T519C:p.I173I,Jak1:NM_146145:exon6:c.T519C:p.I173I"	4qC6	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.597063622	1	0.9999827	GAA	synonymous	NA	NA	NA	NA
PW2017T2	chr4	108570230	PW2017tail	colon	sgMsh2	108570230	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	251	0	0	NA	exonic	Prpf38a	nonsynonymous SNV	Prpf38a:NM_172697:exon5:c.C535T:p.P179S	4qC7	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.336052202	2	0.6674074	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	116311687	PW2017tail	colon	sgMsh2	116311687	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	134	0	0	NA	exonic	Mast2	nonsynonymous SNV	"Mast2:NM_001369062:exon21:c.T2548C:p.F850L,Mast2:NM_008641:exon21:c.T2548C:p.F850L,Mast2:NM_001042743:exon22:c.T2569C:p.F857L,Mast2:NM_001369061:exon22:c.T2569C:p.F857L"	4qD1	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.208809135	2	0.9119619	AAC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	128523494	PW2017tail	colon	sgMsh2	128523494	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	100	0	0	NA	exonic	Csmd2	synonymous SNV	Csmd2:NM_001281955:exon53:c.C8244T:p.G2748G	4qD2.2	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	2	0.5821074	GCT	synonymous	GGCT	8	GGCTGGCT	NA
PW2017T2	chr4	132117217	PW2017tail	colon	sgMsh2	132117217	C	A	SNV	Mutect2;Vardict	2	0.037	115	0	0	NA	exonic	Oprd1	nonsynonymous SNV	Oprd1:NM_013622:exon2:c.G479T:p.R160L	4qD2.3	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.120717781	3	9.60E-06	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr4	134072761	PW2017tail	colon	sgMsh2	134072761	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.055	138	0	0	NA	exonic	Crybg2	frameshift deletion	Crybg2:NM_001162970:exon2:c.304delC:p.K104Rfs*6	4qD3	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr4	139408594	PW2017tail	colon	sgMsh2	139408595	AG	GA	DBS	Mutect2;Vardict	2	0.034	186	0	0	NA	exonic	Ubr4	nonframeshift substitution	Ubr4:NM_001160319:exon20:c.2692_2693GA:p.S898D	4qD3	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.110929853	NA	NA	CAG	nonsynonymous	CAG	10	CAGCAGCAGC	NA
PW2017T2	chr4	141409778	PW2017tail	colon	sgMsh2	141409778	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	137	0	0	NA	exonic	Clcnkb	synonymous SNV	Clcnkb:NM_019701:exon11:c.G1017A:p.T339T	4qD3	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.303425775	2	0.8615145	ACG	synonymous	NA	NA	NA	NA
PW2017T2	chr4	156217156	PW2017tail	colon	sgMsh2	156217156	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.102	51	0	0	NA	exonic	Perm1	frameshift deletion	Perm1:NM_172417:exon2:c.156delC:p.P54Lfs*48	4qE2	chr4-3834436-156223252	2	1	1	0.613	2	NON-ABERRANT	1	0.33278956	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr5	3584278	PW2017tail	colon	sgMsh2	3584278	C	-	Deletion	Strelka2;Vardict	2	0.0294	204	0	0	NA	exonic	1700109H08Rik	frameshift deletion	1700109H08Rik:NM_029843:exon6:c.615delC:p.P207Lfs*11	5qA1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr5	20195217	PW2017tail	colon	sgMsh2	20195217	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	53	0	0	NA	exonic	Magi2	synonymous SNV	"Magi2:NM_001170745:exon3:c.C246T:p.G82G,Magi2:NM_015823:exon3:c.C246T:p.G82G,Magi2:NM_001170746:exon4:c.C735T:p.G245G"	5qA3	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.613376835	1	0.9929982	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chr5	25692155	PW2017tail	colon	sgMsh2	25692155	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	248	0	0	NA	exonic	Xrcc2	frameshift deletion	Xrcc2:NM_020570:exon3:c.795delA:p.K265Nfs*22	5qB1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.394779772	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr5	27451257	PW2017tail	colon	sgMsh2	27451257	C	T	SNV	Mutect2;Vardict	2	0.032	181	0	0	NA	exonic	Dpp6	nonsynonymous SNV	"Dpp6:NM_001136060:exon4:c.C341T:p.T114M,Dpp6:NM_001198886:exon4:c.C335T:p.T112M,Dpp6:NM_010075:exon4:c.C344T:p.T115M,Dpp6:NM_207282:exon4:c.C509T:p.T170M"	5qB1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.104404568	3	0.9972686	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	36614392	PW2017tail	colon	sgMsh2	36614392	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	206	0	0	NA	exonic	D5Ertd579e	stopgain	D5Ertd579e:NM_001081232:exon6:c.T2658A:p.Y886X	5qB3	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.378466558	1	0.9182081	GAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	53701330	PW2017tail	colon	sgMsh2	53701330	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	90	0	0	NA	exonic	Cckar	nonsynonymous SNV	"Cckar:NM_001347354:exon4:c.T434C:p.I145T,Cckar:NM_009827:exon4:c.T647C:p.I216T"	5qC1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.254486134	2	0.909372	GAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	70777242	PW2017tail	colon	sgMsh2	70777242	A	-	Deletion	Strelka2;Vardict	2	0.0959	73	0	0	NA	exonic	Gabrg1	frameshift deletion	Gabrg1:NM_010252:exon7:c.792delT:p.F264Lfs*2	5qC3.1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.312887439	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr5	89571642	PW2017tail	colon	sgMsh2	89571642	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	278	0	0	NA	exonic	Npffr2	nonsynonymous SNV	Npffr2:NM_133192:exon3:c.C389T:p.A130V	5qE1	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	3	0.9999505	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	102552316	PW2017tail	colon	sgMsh2	102552316	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	94	0	0	NA	exonic	Arhgap24	synonymous SNV	Arhgap24:NM_029270:exon2:c.C171A:p.P57P	5qE5	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.64274062	1	0.9999329	CCT	synonymous	NA	NA	NA	NA
PW2017T2	chr5	107148123	PW2017tail	colon	sgMsh2	107148123	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	182	0	0	NA	exonic	Tgfbr3	nonsynonymous SNV	Tgfbr3:NM_011578:exon7:c.C794A:p.P265H	5qE5	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.199021207	2	0.9139482	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	114955861	PW2017tail	colon	sgMsh2	114955861	T	-	Deletion	Strelka2;Vardict	2	0.0833	48	0	0	NA	exonic	Hnf1a	frameshift deletion	Hnf1a:NM_009327:exon3:c.668delA:p.N223Tfs*31	5qF	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.27177814	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr5	120787988	PW2017tail	colon	sgMsh2	120787988	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	258	0	0	NA	exonic	Oas1e	frameshift deletion	"Oas1e:NM_001347450:exon5:c.1014delT:p.F338Lfs*8,Oas1e:NM_145210:exon5:c.1014delT:p.F338Lfs*8"	5qF	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.381729201	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr5	127616896	PW2017tail	colon	sgMsh2	127616896	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.249	22	0	0	NA	exonic	Slc15a4	frameshift deletion	Slc15a4:NM_133895:exon1:c.474delC:p.A159Pfs*54	5qG1.2	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.812398042	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr5	135060773	PW2017tail	colon	sgMsh2	135060773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	131	0	0	NA	exonic	Bud23	nonsynonymous SNV	"Bud23:NM_001363325:exon4:c.G257A:p.G86D,Bud23:NM_001363327:exon5:c.G11A:p.G4D,Bud23:NM_001363324:exon6:c.G323A:p.G108D,Bud23:NM_001363326:exon6:c.G323A:p.G108D,Bud23:NM_025375:exon6:c.G323A:p.G108D"	5qG2	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.593800979	1	0.9999858	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr5	142886971	PW2017tail	colon	sgMsh2	142886971	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	65	0	0	NA	exonic	Fbxl18	synonymous SNV	Fbxl18:NM_001033312:exon3:c.C316A:p.R106R	5qG2	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.420880914	1	0.8580058	CGG	synonymous	NA	NA	NA	NA
PW2017T2	chr5	150495821	PW2017tail	colon	sgMsh2	150495821	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	80	0	0	NA	exonic	Fry	nonsynonymous SNV	Fry:NM_172887:exon60:c.C8729T:p.A2910V	5qG3	chr5-3673201-150534477	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	1	0.6008464	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	4691568	PW2017tail	colon	sgMsh2	4691568	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.113	42	0	0	NA	exonic	Sgce	frameshift deletion	"Sgce:NM_001130189:exon7:c.898delG:p.E300Sfs*7,Sgce:NM_001130190:exon7:c.898delG:p.E300Sfs*8,Sgce:NM_001130191:exon7:c.898delG:p.E300Sfs*8,Sgce:NM_011360:exon7:c.898delG:p.E300Sfs*8,Sgce:NM_001130188:exon8:c.1006delG:p.E336Sfs*8"	6qA1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.36867863	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW2017T2	chr6	8259041	PW2017tail	colon	sgMsh2	8259041	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	82	0	0	NA	exonic	Rpa3	nonsynonymous SNV	Rpa3:NM_026632:exon1:c.T58C:p.Y20H	6qA1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.417618271	1	0.8947648	TAC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	13205785	PW2017tail	colon	sgMsh2	13205785	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	109	0	0	NA	exonic	Vwde	synonymous SNV	"Vwde:NM_001013757:exon5:c.G762A:p.A254A,Vwde:NM_001368871:exon5:c.G762A:p.A254A"	6qA1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	3	0.883617	ACG	synonymous	NA	NA	NA	NA
PW2017T2	chr6	23496791	PW2017tail	colon	sgMsh2	23496791	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	196	0	0	NA	exonic	Cadps2	nonsynonymous SNV	"Cadps2:NM_001252105:exon8:c.G1454A:p.R485H,Cadps2:NM_001252106:exon8:c.G1454A:p.R485H,Cadps2:NM_001252107:exon8:c.G1454A:p.R485H,Cadps2:NM_001252108:exon8:c.G1454A:p.R485H,Cadps2:NM_001252110:exon8:c.G1454A:p.R485H,Cadps2:NM_153163:exon8:c.G1454A:p.R485H"	6qA3.1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.411092985	1	0.988759	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	24876423	PW2017tail	colon	sgMsh2	24876423	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	111	0	0	NA	exonic	Hyal5	synonymous SNV	Hyal5:NM_028957:exon2:c.C294T:p.L98L	6qA3.1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.153344209	3	0.7342483	TCT	synonymous	NA	NA	NA	NA
PW2017T2	chr6	27429428	PW2017tail	colon	sgMsh2	27429428	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	160	0	0	NA	exonic	Grm8	nonsynonymous SNV	"Grm8:NM_001311072:exon7:c.G1466A:p.G489D,Grm8:NM_001361125:exon8:c.G1466A:p.G489D,Grm8:NM_008174:exon8:c.G1466A:p.G489D"	6qA3.2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.371941272	1	0.8259448	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	94606176	PW2017tail	colon	sgMsh2	94606176	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.15	94	0	0	NA	exonic	Lrig1	frameshift deletion	"Lrig1:NM_001355269:exon17:c.2811delG:p.S938Pfs*13,Lrig1:NM_008377:exon18:c.2958delG:p.S987Pfs*13"	6qD2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.489396411	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr6	106742688	PW2017tail	colon	sgMsh2	106742688	C	T	SNV	Mutect2;Vardict	2	0.022	254	0	0	NA	exonic	Il5ra	synonymous SNV	Il5ra:NM_008370:exon5:c.G183A:p.E61E	6qE1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.07177814	3	0.9999952	ACT	synonymous	NA	NA	NA	NA
PW2017T2	chr6	119751260	PW2017tail	colon	sgMsh2	119751260	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.092	128	0	0	NA	exonic	Erc1	frameshift deletion	Erc1:NM_053204:exon11:c.1956delA:p.D653Tfs*4	6qF1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.300163132	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr6	121881792	PW2017tail	colon	sgMsh2	121881792	T	C	SNV	Mutect2;Vardict	2	0.026	261	0	0	NA	exonic	Mug1	synonymous SNV	Mug1:NM_008645:exon28:c.T3468C:p.F1156F	6qF1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.084828711	3	0.9999825	TTG	synonymous	NA	NA	NA	NA
PW2017T2	chr6	122969495	PW2017tail	colon	sgMsh2	122969495	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.163	114	0	0	NA	exonic	Clec4a3	frameshift deletion	"Clec4a3:NM_153197:exon6:c.697delA:p.I235Yfs*37,Clec4a3:NM_001204241:exon7:c.697delA:p.I235Yfs*37"	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.531810767	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr6	123713148	PW2017tail	colon	sgMsh2	123713148	T	-	Deletion	Mutect2;Vardict	2	0.041	403	0	0	NA	exonic	Vmn2r23	frameshift deletion	Vmn2r23:NM_001104638:exon3:c.982delT:p.F329Lfs*48	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2017T2	chr6	124778251	PW2017tail	colon	sgMsh2	124778251	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	162	0	0	NA	exonic	Lrrc23	nonsynonymous SNV	Lrrc23:NM_001302555:exon4:c.A322G:p.S108G	6qF2	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.290375204	2	0.9480928	CTG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	125281244	PW2017tail	colon	sgMsh2	125281244	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	298	0	0	NA	exonic	Tuba3a	nonsynonymous SNV	Tuba3a:NM_009446:exon4:c.C782T:p.P261L	6qF3	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.094616639	3	0.9999848	TGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr6	125307262	PW2017tail	colon	sgMsh2	125307262	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	45	0	0	NA	exonic	Ltbr	stopgain	Ltbr:NM_010736:exon10:c.G1216T:p.E406X	6qF3	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.231647635	2	0.6729633	TCG	nonsynonymous	TGTCTC	12	TGTCTCTGTCTC	NA
PW2017T2	chr6	134507579	PW2017tail	colon	sgMsh2	134507579	C	T	SNV	Mutect2;Vardict	2	0.036	122	0	0	NA	exonic	Lrp6	synonymous SNV	Lrp6:NM_008514:exon6:c.G1080A:p.R360R	6qG1	chr6-3483595-149019484	2	1	1	0.613	2	NON-ABERRANT	1	0.117455139	3	0.9617004	GCC	synonymous	NA	NA	NA	NA
PW2017T2	chr7	3653532	PW2017tail	colon	sgMsh2	3653532	C	-	Deletion	Strelka2;Vardict	2	0.122	41	0	0	NA	exonic	Cnot3	frameshift deletion	Cnot3:NM_146176:exon9:c.725delC:p.S245Afs*89	7qA1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
PW2017T2	chr7	6429346	PW2017tail	colon	sgMsh2	6429346	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	168	0	0	NA	exonic	Smim17	nonsynonymous SNV	Smim17:NM_001134752:exon4:c.T286G:p.L96V	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9945967	CTT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	6488854	PW2017tail	colon	sgMsh2	6488854	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.147	269	0	0	NA	exonic	Olfr1347	stopgain	Olfr1347:NM_146385:exon1:c.C19T:p.Q7X	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.479608483	1	0.9999956	TGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	7337423	PW2017tail	colon	sgMsh2	7337423	C	A	SNV	Mutect2;Vardict	2	0.024	330	0	0	NA	exonic	Vmn2r30	nonsynonymous SNV	"Vmn2r30:NM_001384913:exon1:c.G71T:p.R24M,Vmn2r30:NM_009490:exon1:c.G71T:p.R24M"	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.078303426	3	0.9999997	CCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	10099895	PW2017tail	colon	sgMsh2	10099895	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	642	0	0	NA	exonic	Vmn2r51	nonsynonymous SNV	Vmn2r51:NM_001105179:exon3:c.A1215G:p.I405M	7qA1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.518760196	1	1	CTA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	19080623	PW2017tail	colon	sgMsh2	19080623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	49	0	0	NA	exonic	Dmwd	synonymous SNV	"Dmwd:NM_001374607:exon3:c.T1197C:p.P399P,Dmwd:NM_010058:exon3:c.T1197C:p.P399P"	7qA3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.707993475	1	0.997901	CTG	synonymous	NA	NA	NA	NA
PW2017T2	chr7	23321934	PW2017tail	colon	sgMsh2	23321934	C	A	SNV	Mutect2;Vardict	2	0.03	576	0	0	NA	exonic	Nlrp4e	nonsynonymous SNV	Nlrp4e:NM_001004194:exon2:c.C1845A:p.S615R	7qA3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	3	2.25E-09	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	24515278	PW2017tail	colon	sgMsh2	24515278	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.192	27	0	0	NA	exonic	Zfp428	synonymous SNV	"Zfp428:NM_001290461:exon3:c.G318A:p.P106P,Zfp428:NM_146183:exon3:c.G279A:p.P93P,Zfp428:NM_175142:exon3:c.G318A:p.P106P"	7qA3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.626427406	1	0.9378034	CGC	synonymous	NA	NA	NA	NA
PW2017T2	chr7	25080792	PW2017tail	colon	sgMsh2	25080792	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	148	0	0	NA	exonic	Zfp574	nonsynonymous SNV	"Zfp574:NM_175477:exon2:c.G1238A:p.R413Q,Zfp574:NM_001168506:exon3:c.G1238A:p.R413Q"	7qA3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.375203915	1	8.65E-08	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	42265983	PW2017tail	colon	sgMsh2	42265983	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	209	0	0	NA	exonic	Vmn2r61	nonsynonymous SNV	Vmn2r61:NM_001105058:exon2:c.A353G:p.H118R	7qB3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.225122349	2	0.9950531	CAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	44516456	PW2017tail	colon	sgMsh2	44516456	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	210	0	0	NA	exonic	Mybpc2	nonsynonymous SNV	Mybpc2:NM_146189:exon9:c.G814C:p.V272L	7qB3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.104404568	3	0.9989298	ACC	nonsynonymous	CCA	9	CCACCACCA	NA
PW2017T2	chr7	45007668	PW2017tail	colon	sgMsh2	45007668	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	114	0	0	NA	exonic	Scaf1	nonsynonymous SNV	Scaf1:NM_001008422:exon7:c.C1786T:p.R596W	7qB3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.150081566	3	0.7724296	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	55944521	PW2017tail	colon	sgMsh2	55944521	T	-	Deletion	Strelka2;Vardict	2	0.1619	105	0	0	NA	exonic	Nipa2	frameshift deletion	"Nipa2:NM_001256131:exon2:c.99delA:p.G34Afs*10,Nipa2:NM_001256130:exon3:c.99delA:p.G34Afs*10,Nipa2:NM_001256132:exon3:c.99delA:p.G34Afs*10,Nipa2:NM_023647:exon3:c.99delA:p.G34Afs*10"	7qB5	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.52822186	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW2017T2	chr7	56182655	PW2017tail	colon	sgMsh2	56182655	C	T	SNV	Mutect2;Vardict	2	0.027	202	0	0	NA	exonic	Herc2	nonsynonymous SNV	"Herc2:NM_001360080:exon59:c.C9098T:p.T3033M,Herc2:NM_010418:exon59:c.C9098T:p.T3033M"	7qB5	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.088091354	3	0.9997164	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	64204576	PW2017tail	colon	sgMsh2	64204576	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	150	0	0	NA	exonic	Trpm1	nonsynonymous SNV	"Trpm1:NM_001039104:exon6:c.T845C:p.L282P,Trpm1:NM_018752:exon6:c.T497C:p.L166P"	7qC	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.254486134	2	0.9865384	CTG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	79094073	PW2017tail	colon	sgMsh2	79094073	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.125	77	0	0	NA	exonic	Acan	synonymous SNV	"Acan:NM_001361500:exon10:c.C1851T:p.T617T,Acan:NM_007424:exon10:c.C1851T:p.T617T"	7qD2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.407830343	1	0.8536034	CCG	synonymous	NA	NA	NA	NA
PW2017T2	chr7	80392507	PW2017tail	colon	sgMsh2	80392507	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	96	0	0	NA	exonic	Furin	frameshift deletion	"Furin:NM_001081454:exon12:c.1339delC:p.Q447Sfs*18,Furin:NM_011046:exon12:c.1339delC:p.Q447Sfs*18"	7qD2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.257748777	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr7	80469740	PW2017tail	colon	sgMsh2	80469740	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	252	0	0	NA	exonic	Blm	synonymous SNV	"Blm:NM_001042527:exon16:c.C3084T:p.V1028V,Blm:NM_007550:exon16:c.C3093T:p.V1031V"	7qD2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9995913	TGA	synonymous	NA	NA	NA	NA
PW2017T2	chr7	85738646	PW2017tail	colon	sgMsh2	85738646	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.033	430	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon6:c.T1694G:p.L565R	7qD3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9999983	GAG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	85750746	PW2017tail	colon	sgMsh2	85750746	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	466	0	0	NA	exonic	Vmn2r72	nonsynonymous SNV	Vmn2r72:NM_001384915:exon3:c.A1079C:p.N360T	7qD3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.4045677	1	0.999918	ATT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	88490757	PW2017tail	colon	sgMsh2	88490757	C	A	SNV	Mutect2;Vardict	2	0.04	108	0	0	NA	exonic	Rab38	synonymous SNV	Rab38:NM_028238:exon3:c.C633A:p.S211S	7qD3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.13050571	3	0.8983212	CCT	synonymous	NA	NA	NA	NA
PW2017T2	chr7	92431143	PW2017tail	colon	sgMsh2	92431143	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	159	0	0	NA	exonic	Dlg2	stopgain	"Dlg2:NM_001243047:exon8:c.C670T:p.Q224X,Dlg2:NM_001243046:exon12:c.C1111T:p.Q371X,Dlg2:NM_011807:exon20:c.C2224T:p.Q742X"	7qE1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.319738989	2	9.58E-06	GCA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	96868045	PW2017tail	colon	sgMsh2	96868045	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	126	0	0	NA	exonic	Tenm4	nonsynonymous SNV	"Tenm4:NM_001310760:exon26:c.T4342G:p.S1448A,Tenm4:NM_001310762:exon26:c.T4318G:p.S1440A,Tenm4:NM_011858:exon26:c.T4231G:p.S1411A"	7qE1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	1	0.6365736	CTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	99453803	PW2017tail	colon	sgMsh2	99453803	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.214	47	0	0	NA	exonic	Gdpd5	nonsynonymous SNV	"Gdpd5:NM_001362168:exon12:c.C797T:p.A266V,Gdpd5:NM_001362167:exon13:c.C968T:p.A323V,Gdpd5:NM_201352:exon13:c.C968T:p.A323V,Gdpd5:NM_001362166:exon14:c.C968T:p.A323V"	7qE1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.698205546	1	0.996867	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	99458839	PW2017tail	colon	sgMsh2	99458839	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	55	0	0	NA	exonic	Gdpd5	nonsynonymous SNV	"Gdpd5:NM_001362168:exon17:c.G1466A:p.R489Q,Gdpd5:NM_201352:exon17:c.G1622A:p.R541Q,Gdpd5:NM_001362166:exon18:c.G1622A:p.R541Q,Gdpd5:NM_001362167:exon18:c.G1637A:p.R546Q"	7qE1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.522022838	1	0.9686826	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	99767872	PW2017tail	colon	sgMsh2	99767872	G	T	SNV	Mutect2;Vardict	2	0.033	231	0	0	NA	exonic	Olfr521	stopgain	Olfr521:NM_146356:exon1:c.G709T:p.E237X	7qE1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.99922	GGA	nonsynonymous	AAGG	8	AAGGAAGG	NA
PW2017T2	chr7	100391154	PW2017tail	colon	sgMsh2	100391154	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	289	0	0	NA	exonic	C2cd3	frameshift deletion	C2cd3:NM_001017985:exon5:c.929delC:p.P312Lfs*9	7qE2	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.306688418	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr7	103418841	PW2017tail	colon	sgMsh2	103418841	A	G	SNV	Mutect2;Vardict	2	0.018	479	0	0	NA	exonic	Usp17lc	nonsynonymous SNV	Usp17lc:NM_010089:exon2:c.A1342G:p.N448D	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.058727569	3	1.00E-09	CAA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	103660684	PW2017tail	colon	sgMsh2	103660684	C	T	SNV	Mutect2;MuSe;Vardict	3	0.082	431	0	0	NA	exonic	Olfr623	nonsynonymous SNV	Olfr623:NM_147122:exon1:c.G565A:p.A189T	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.267536705	2	0.9999878	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	104012305	PW2017tail	colon	sgMsh2	104012305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.057	430	0	0	NA	exonic	Olfr639	synonymous SNV	Olfr639:NM_147084:exon1:c.G396A:p.L132L	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.185970636	2	0.9497259	GCA	synonymous	NA	NA	NA	NA
PW2017T2	chr7	104148981	PW2017tail	colon	sgMsh2	104148981	A	T	SNV	Mutect2;Vardict	2	0.025	202	0	0	NA	exonic	Ubqlnl	synonymous SNV	Ubqlnl:NM_198624:exon1:c.T1308A:p.A436A	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.081566069	3	0.9998497	GAG	synonymous	NA	NA	NA	NA
PW2017T2	chr7	104153934	PW2017tail	colon	sgMsh2	104153934	C	T	SNV	Mutect2;Vardict	2	0.03	180	0	0	NA	exonic	Olfm5	nonsynonymous SNV	Olfm5:NM_172905:exon6:c.G1321A:p.G441S	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.097879282	3	0.9983961	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	104704526	PW2017tail	colon	sgMsh2	104704526	A	-	Deletion	Mutect2;Vardict	2	0.068	108	0	0	NA	exonic	Olfr663	frameshift deletion	Olfr663:NM_001011757:exon1:c.958delA:p.G322Efs*20	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.221859706	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr7	105740293	PW2017tail	colon	sgMsh2	105740293	C	-	Deletion	Mutect2;Vardict	2	0.05	165	0	0	NA	exonic	Ilk	frameshift deletion	"Ilk:NM_001161724:exon3:c.206delC:p.L71Cfs*25,Ilk:NM_010562:exon3:c.206delC:p.L71Cfs*25"	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.163132137	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr7	105742551	PW2017tail	colon	sgMsh2	105742551	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	230	0	0	NA	exonic	Ilk	synonymous SNV	"Ilk:NM_001161724:exon13:c.T1248C:p.G416G,Ilk:NM_010562:exon13:c.T1248C:p.G416G"	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.094616639	3	0.9998105	GTA	synonymous	NA	NA	NA	NA
PW2017T2	chr7	105771685	PW2017tail	colon	sgMsh2	105771685	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	96	0	0	NA	exonic	Dchs1	synonymous SNV	Dchs1:NM_001162943:exon2:c.C1527T:p.G509G	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.254486134	2	0.9246473	TGC	synonymous	NA	NA	NA	NA
PW2017T2	chr7	105771731	PW2017tail	colon	sgMsh2	105771731	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	105	0	0	NA	exonic	Dchs1	nonsynonymous SNV	Dchs1:NM_001162943:exon2:c.C1481A:p.P494H	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.127243067	3	0.09238386	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	107098257	PW2017tail	colon	sgMsh2	107098257	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	165	0	0	NA	exonic	Olfr17	nonsynonymous SNV	Olfr17:NM_020598:exon1:c.G791A:p.R264H	7qE3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.10766721	3	0.9940768	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	118490380	PW2017tail	colon	sgMsh2	118490380	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.143	32	0	0	NA	exonic	Itpripl2	nonsynonymous SNV	Itpripl2:NM_001033380:exon1:c.G955A:p.V319I	7qF1	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.466557912	1	0.8093177	ACG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	127391766	PW2017tail	colon	sgMsh2	127391766	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	177	0	0	NA	exonic	E430018J23Rik	nonsynonymous SNV	E430018J23Rik:NM_198011:exon3:c.G1048A:p.A350T	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.384991843	1	0.923462	GCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr7	127933696	PW2017tail	colon	sgMsh2	127933696	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	53	0	0	NA	exonic	Prss36	frameshift deletion	Prss36:NM_001319147:exon13:c.2023delC:p.L675Wfs*5	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.4045677	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr7	127945323	PW2017tail	colon	sgMsh2	127945323	C	-	Deletion	Mutect2;Vardict	2	0.095	43	0	0	NA	exonic	Prss36	frameshift deletion	Prss36:NM_001319147:exon4:c.189delG:p.S64Afs*27	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.30995106	NA	NA	TCA	frameshift	NA	NA	NA	-1
PW2017T2	chr7	135115344	PW2017tail	colon	sgMsh2	135115344	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	169	0	0	NA	exonic	Dock1	synonymous SNV	Dock1:NM_001033420:exon37:c.G3708A:p.A1236A	7qF3	chr7-3908582-143062472	2	1	1	0.613	2	NON-ABERRANT	1	0.156606852	3	0.7792284	CGG	synonymous	NA	NA	NA	NA
PW2017T2	chr8	4186131	PW2017tail	colon	sgMsh2	4186131	G	T	SNV	Mutect2;Strelka2;MuSe	3	0.129	45	0	0	NA	exonic	Evi5l	nonsynonymous SNV	"Evi5l:NM_001039578:exon3:c.G308T:p.R103M,Evi5l:NM_001346730:exon3:c.G308T:p.R103M,Evi5l:NM_001368791:exon3:c.G371T:p.R124M,Evi5l:NM_001368792:exon3:c.G371T:p.R124M,Evi5l:NM_001368794:exon3:c.G308T:p.R103M"	8qA1.1	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.420880914	1	0.7835438	AGG	nonsynonymous	AGGA	9	AGGAAGGAA	NA
PW2017T2	chr8	40507537	PW2017tail	colon	sgMsh2	40507537	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	213	0	0	NA	exonic	Cnot7	nonsynonymous SNV	"Cnot7:NM_001361938:exon2:c.C229T:p.L77F,Cnot7:NM_001271542:exon3:c.C229T:p.L77F,Cnot7:NM_001271543:exon3:c.C229T:p.L77F,Cnot7:NM_001361939:exon3:c.C229T:p.L77F,Cnot7:NM_011135:exon3:c.C229T:p.L77F"	8qA4	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.185970636	2	8.95E-06	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	43569697	PW2017tail	colon	sgMsh2	43569697	T	-	Deletion	Mutect2;Vardict	2	0.038	283	0	0	NA	exonic	Adam26a	frameshift deletion	Adam26a:NM_010085:exon2:c.755delA:p.N252Tfs*4	8qA4	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.123980424	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr8	44951692	PW2017tail	colon	sgMsh2	44951692	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.052	220	0	0	NA	exonic	Fat1	frameshift deletion	Fat1:NM_001081286:exon1:c.1479delG:p.E495Rfs*4	8qB1.1	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.169657423	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2017T2	chr8	64056321	PW2017tail	colon	sgMsh2	64056321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	145	0	0	NA	exonic	Tll1	nonsynonymous SNV	Tll1:NM_009390:exon13:c.C1654A:p.L552M	8qB3.1	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.287112561	2	0.9394387	AGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	70914490	PW2017tail	colon	sgMsh2	70914490	C	-	Deletion	Strelka2;Vardict	2	0.041	122	0	0	NA	exonic	Map1s	frameshift deletion	Map1s:NM_173013:exon5:c.2038delC:p.P681Lfs*25	8qB3.3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.133768352	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2017T2	chr8	84134730	PW2017tail	colon	sgMsh2	84134730	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	67	0	0	NA	exonic	Cc2d1a	frameshift deletion	"Cc2d1a:NM_001381872:exon22:c.2118delG:p.R707Gfs*3,Cc2d1a:NM_001381871:exon23:c.2322delG:p.R775Gfs*3,Cc2d1a:NM_001381873:exon23:c.2229delG:p.R744Gfs*3,Cc2d1a:NM_145970:exon23:c.2325delG:p.R776Gfs*3"	8qC2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.355628059	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr8	84536418	PW2017tail	colon	sgMsh2	84536418	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	125	0	0	NA	exonic	Cacna1a	synonymous SNV	"Cacna1a:NM_001252059:exon8:c.G1080A:p.A360A,Cacna1a:NM_001252060:exon9:c.G1221A:p.A407A,Cacna1a:NM_001252061:exon9:c.G1221A:p.A407A,Cacna1a:NM_007578:exon9:c.G1221A:p.A407A"	8qC2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.482871126	1	0.9974054	CGG	synonymous	NA	NA	NA	NA
PW2017T2	chr8	85092967	PW2017tail	colon	sgMsh2	85092967	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	131	0	0	NA	exonic	Man2b1	synonymous SNV	Man2b1:NM_010764:exon14:c.C1780T:p.L594L	8qC3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.257748777	2	0.9731977	GCT	synonymous	NA	NA	NA	NA
PW2017T2	chr8	85279025	PW2017tail	colon	sgMsh2	85279025	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	146	0	0	NA	exonic	Vps35	nonsynonymous SNV	Vps35:NM_022997:exon9:c.C946T:p.P316S	8qC3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.205546493	2	0.9118043	GGT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	88324463	PW2017tail	colon	sgMsh2	88324463	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	116	0	0	NA	exonic	Adcy7	nonsynonymous SNV	"Adcy7:NM_001037723:exon22:c.G2369A:p.S790N,Adcy7:NM_001037724:exon22:c.G2369A:p.S790N,Adcy7:NM_001109756:exon22:c.G2369A:p.S790N,Adcy7:NM_007406:exon22:c.G2369A:p.S790N"	8qC3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.215334421	2	0.9114189	AGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	105805547	PW2017tail	colon	sgMsh2	105805547	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	187	0	0	NA	exonic	Ranbp10	nonsynonymous SNV	Ranbp10:NM_145824:exon3:c.A385T:p.M129L	8qD3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.551386623	1	0.9999981	ATG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	105842149	PW2017tail	colon	sgMsh2	105842149	C	-	Deletion	Mutect2;Vardict	2	0.051	124	0	0	NA	exonic	Tsnaxip1	frameshift deletion	Tsnaxip1:NM_024445:exon11:c.1269delC:p.F426Sfs*7	8qD3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.16639478	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2017T2	chr8	108946656	PW2017tail	colon	sgMsh2	108946656	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	65	0	0	NA	exonic	Zfhx3	nonsynonymous SNV	Zfhx3:NM_007496:exon9:c.G4337A:p.R1446H	8qD3	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.33278956	2	0.5337167	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr8	122785921	PW2017tail	colon	sgMsh2	122785921	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	68	0	0	NA	exonic	Acsf3	synonymous SNV	Acsf3:NM_144932:exon5:c.C1080A:p.I360I	8qE1	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.407830343	1	0.8283576	TCG	synonymous	NA	NA	NA	NA
PW2017T2	chr8	124003162	PW2017tail	colon	sgMsh2	124003162	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	120	0	0	NA	exonic	Taf5l	nonsynonymous SNV	"Taf5l:NM_001357315:exon4:c.G787A:p.A263T,Taf5l:NM_133966:exon4:c.G787A:p.A263T"	8qE2	chr8-3748601-129027388	2	1	1	0.613	2	NON-ABERRANT	1	0.179445351	2	0.000794124	GCA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	9984092	PW2017tail	colon	sgMsh2	9984092	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	138	0	0	NA	exonic	Cntn5	frameshift deletion	"Cntn5:NM_001033359:exon6:c.515delA:p.N172Tfs*18,Cntn5:NM_001170787:exon10:c.1130delA:p.N377Tfs*18"	9qA1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.44045677	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr9	13799892	PW2017tail	colon	sgMsh2	13799892	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	172	0	0	NA	exonic	Mtmr2	nonsynonymous SNV	"Mtmr2:NM_001373873:exon11:c.C1196T:p.A399V,Mtmr2:NM_001373874:exon11:c.C980T:p.A327V,Mtmr2:NM_001373877:exon11:c.C980T:p.A327V,Mtmr2:NM_001373878:exon11:c.C980T:p.A327V,Mtmr2:NM_023858:exon11:c.C1196T:p.A399V,Mtmr2:NM_001372573:exon12:c.C980T:p.A327V,Mtmr2:NM_001373875:exon12:c.C980T:p.A327V,Mtmr2:NM_001373876:exon13:c.C980T:p.A327V"	9qA1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.123980424	3	0.9817759	GCT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	26991354	PW2017tail	colon	sgMsh2	26991354	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.144	130	0	0	NA	exonic	Acad8	frameshift insertion	Acad8:NM_025862:exon3:c.259dupG:p.V87Gfs*15	9qA4	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.469820555	NA	NA	GAC	frameshift	C	5	CCCCC	1
PW2017T2	chr9	32317716	PW2017tail	colon	sgMsh2	32317716	C	T	SNV	Mutect2;Vardict	2	0.046	91	0	0	NA	exonic	Kcnj5	nonsynonymous SNV	Kcnj5:NM_010605:exon4:c.G1124A:p.R375Q	9qA4	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.150081566	3	0.000746127	CCG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	32396519	PW2017tail	colon	sgMsh2	32396519	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	404	0	0	NA	exonic	Kcnj1	nonsynonymous SNV	"Kcnj1:NM_001168354:exon2:c.T238C:p.Y80H,Kcnj1:NM_019659:exon2:c.T178C:p.Y60H"	9qA4	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.371941272	1	0.9760235	GTA	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	37993406	PW2017tail	colon	sgMsh2	37993406	A	-	Deletion	Mutect2;Vardict	2	0.044	173	0	0	NA	exonic	Olfr881	frameshift deletion	Olfr881:NM_146418:exon1:c.913delA:p.T307Lfs*1	9qA4	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.143556281	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr9	38499573	PW2017tail	colon	sgMsh2	38499573	A	-	Deletion	Strelka2;Vardict	2	0.115	113	0	0	NA	exonic	Olfr907	frameshift deletion	Olfr907:NM_146805:exon1:c.903delA:p.T304Lfs*1	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.375203915	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2017T2	chr9	38581593	PW2017tail	colon	sgMsh2	38581593	T	-	Deletion	Mutect2;Vardict	2	0.019	550	0	0	NA	exonic	Olfr912	frameshift deletion	Olfr912:NM_146810:exon2:c.315delT:p.F107Lfs*8	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2017T2	chr9	39237593	PW2017tail	colon	sgMsh2	39237593	-	C	Insertion	Mutect2;Vardict	2	0.024	283	0	0	NA	exonic	Olfr1537	frameshift insertion	Olfr1537:NM_207665:exon1:c.838_839insG:p.F280Cfs*18	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.078303426	NA	NA	AAA	frameshift	NA	NA	NA	1
PW2017T2	chr9	39910567	PW2017tail	colon	sgMsh2	39910567	G	A	SNV	Mutect2;Vardict	2	0.019	406	0	0	NA	exonic	Olfr229	nonsynonymous SNV	Olfr229:NM_146613:exon1:c.G763A:p.A255T	9qA5.1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.061990212	3	1.47E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	44389594	PW2017tail	colon	sgMsh2	44389594	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.091	94	0	0	NA	exonic	Hyou1	frameshift deletion	Hyou1:NM_021395:exon24:c.2854delA:p.K952Nfs*3	9qA5.2	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.296900489	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW2017T2	chr9	44808066	PW2017tail	colon	sgMsh2	44808066	G	A	SNV	Mutect2;Vardict	2	0.026	163	0	0	NA	exonic	Kmt2a	nonsynonymous SNV	Kmt2a:NM_001357549:exon36:c.C11737T:p.R3913W	9qA5.2	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.084828711	3	0.9989469	CGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	56477387	PW2017tail	colon	sgMsh2	56477387	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	80	0	0	NA	exonic	Hmg20a	frameshift deletion	Hmg20a:NM_025812:exon4:c.440delA:p.K148Sfs*15	9qB	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.522022838	NA	NA	GAA	frameshift	NA	NA	NA	-1
PW2017T2	chr9	62372088	PW2017tail	colon	sgMsh2	62372088	A	G	SNV	Mutect2;MuSe;Vardict	3	0.104	95	0	0	NA	exonic	Anp32a	synonymous SNV	Anp32a:NM_009672:exon3:c.A231G:p.S77S	9qB	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.339314845	2	0.5165205	CAG	synonymous	NA	NA	NA	NA
PW2017T2	chr9	62796894	PW2017tail	colon	sgMsh2	62796894	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	250	0	0	NA	exonic	Fem1b	synonymous SNV	Fem1b:NM_010193:exon2:c.G1083A:p.E361E	9qB	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.153344209	3	0.0963238	GCT	synonymous	NA	NA	NA	NA
PW2017T2	chr9	66400129	PW2017tail	colon	sgMsh2	66400129	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.074	202	0	0	NA	exonic	Herc1	nonsynonymous SNV	Herc1:NM_145617:exon16:c.A3104T:p.N1035I	9qC	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.241435563	2	0.9979417	AAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	76491726	PW2017tail	colon	sgMsh2	76491726	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	222	0	0	NA	exonic	Fam83b	nonsynonymous SNV	Fam83b:NM_001045518:exon5:c.A2094C:p.K698N	9qD	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.443719413	1	0.9994515	GTT	nonsynonymous	T	5	TTTTT	NA
PW2017T2	chr9	78473794	PW2017tail	colon	sgMsh2	78473794	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.107	31	0	0	NA	exonic	Mto1	nonsynonymous SNV	Mto1:NM_026658:exon12:c.G1919T:p.G640V	9qE1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.349102773	1	0.5274169	GGG	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	96052519	PW2017tail	colon	sgMsh2	96052519	A	-	Deletion	Strelka2;Vardict	2	0.0758	66	0	0	NA	exonic	Xrn1	frameshift deletion	"Xrn1:NM_001311130:exon42:c.4870delA:p.R1626Efs*33,Xrn1:NM_011916:exon42:c.4882delA:p.R1630Efs*33"	9qE3.3	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.24730832	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chr9	103050244	PW2017tail	colon	sgMsh2	103050244	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.105	62	0	0	NA	exonic	Slco2a1	nonsynonymous SNV	Slco2a1:NM_033314:exon3:c.C335T:p.A112V	9qF1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.342577488	1	0.5175389	GCC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	104872761	PW2017tail	colon	sgMsh2	104872761	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	204	0	0	NA	exonic	Cpne4	nonsynonymous SNV	"Cpne4:NM_001357439:exon3:c.T317C:p.V106A,Cpne4:NM_001378996:exon3:c.T287C:p.V96A,Cpne4:NM_028719:exon3:c.T263C:p.V88A"	9qF1	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.110929853	3	0.9975355	GTC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chr9	110428666	PW2017tail	colon	sgMsh2	110428666	C	-	Deletion	Strelka2;Vardict	2	0.1031	97	0	0	NA	exonic	Klhl18	frameshift deletion	"Klhl18:NM_001360306:exon10:c.1705delG:p.V569Lfs*47,Klhl18:NM_177771:exon10:c.1690delG:p.V564Lfs*47"	9qF2	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.336378467	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
PW2017T2	chr9	113662366	PW2017tail	colon	sgMsh2	113662366	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	116	0	0	NA	exonic	Pdcd6ip	nonsynonymous SNV	"Pdcd6ip:NM_001164677:exon13:c.C1808T:p.A603V,Pdcd6ip:NM_001164678:exon13:c.C1793T:p.A598V,Pdcd6ip:NM_011052:exon13:c.C1793T:p.A598V"	9qF3	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.156606852	3	0.7064137	AGC	nonsynonymous	AG	8	AGAGAGAG	NA
PW2017T2	chr9	119349967	PW2017tail	colon	sgMsh2	119349967	C	T	SNV	Mutect2;Vardict	2	0.05	219	0	0	NA	exonic	Acaa1a	synonymous SNV	"Acaa1a:NM_001357516:exon11:c.C753T:p.G251G,Acaa1a:NM_130864:exon12:c.C1209T:p.G403G"	9qF3	chr9-3342997-124127224	2	1	1	0.613	2	NON-ABERRANT	1	0.163132137	3	0.7177893	GCG	synonymous	NA	NA	NA	NA
PW2017T2	chrX	13665340	PW2017tail	colon	sgMsh2	13665340	A	-	Deletion	Mutect2;Vardict	2	0.05	130	0	0	NA	exonic	Gpr82	frameshift deletion	Gpr82:NM_175669:exon4:c.126delA:p.I44fs*0	XqA1.1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2017T2	chrX	60084440	PW2017tail	colon	sgMsh2	60084440	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	130	0	0	NA	exonic	Mcf2	synonymous SNV	"Mcf2:NM_001359001:exon15:c.A1650G:p.K550K,Mcf2:NM_001358999:exon16:c.A1770G:p.K590K,Mcf2:NM_001359000:exon16:c.A1767G:p.K589K,Mcf2:NM_001358998:exon17:c.A1818G:p.K606K,Mcf2:NM_133197:exon17:c.A1887G:p.K629K,Mcf2:NM_001289730:exon18:c.A1935G:p.K645K,Mcf2:NM_001289731:exon20:c.A2436G:p.K812K"	XqA6	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	GTT	synonymous	NA	NA	NA	NA
PW2017T2	chrX	75379574	PW2017tail	colon	sgMsh2	75379574	G	A	SNV	Mutect2;Vardict	2	0.044	103	0	0	NA	exonic	F8	nonsynonymous SNV	"F8:NM_001161373:exon1:c.C59T:p.A20V,F8:NM_001161374:exon1:c.C59T:p.A20V,F8:NM_007977:exon1:c.C59T:p.A20V"	XqA7.3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chrX	85614680	PW2017tail	colon	sgMsh2	85614680	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.078	115	0	0	NA	exonic	Tab3	nonsynonymous SNV	"Tab3:NM_025729:exon4:c.A812G:p.H271R,Tab3:NM_001358447:exon5:c.A812G:p.H271R"	XqC1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
PW2017T2	chrX	86762136	PW2017tail	colon	sgMsh2	86762136	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	82	0	0	NA	exonic	Il1rapl1	synonymous SNV	Il1rapl1:NM_001160403:exon9:c.C1095T:p.G365G	XqC1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CGC	synonymous	NA	NA	NA	NA
PW2017T2	chrX	100849072	PW2017tail	colon	sgMsh2	100849072	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	102	0	0	NA	exonic	Tex11	nonsynonymous SNV	Tex11:NM_031384:exon28:c.A2500G:p.T834A	XqC3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	GTA	nonsynonymous	T	5	TTTTT	NA
PW2017T2	chrX	111660233	PW2017tail	colon	sgMsh2	111660233	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	182	0	0	NA	exonic	Hdx	stopgain	"Hdx:NM_001290459:exon2:c.C484T:p.R162X,Hdx:NM_001080549:exon3:c.C658T:p.R220X"	XqE1	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW2017T2	chrX	149616850	PW2017tail	colon	sgMsh2	149616850	T	G	SNV	Mutect2;Vardict	2	0.047	393	0	0	NA	exonic	Gm10439	synonymous SNV	Gm10439:NM_001037716:exon4:c.T714G:p.A238A	XqF3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CTC	synonymous	NA	NA	NA	NA
PW2017T2	chrX	155574121	PW2017tail	colon	sgMsh2	155574121	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.076	76	0	0	NA	exonic	Ptchd1	nonsynonymous SNV	Ptchd1:NM_001093750:exon3:c.T2087C:p.L696P	XqF3	NA	NA	NA	NA	0.613	2	NON-ABERRANT	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	16131170	PW2017tail	colon	sgMsh2	16131170	C	-	Deletion	Strelka2;Vardict	2	0.0737	95	0	0	NA	exonic	Rdh10	frameshift deletion	Rdh10:NM_133832:exon5:c.866delC:p.R291Afs*5	1qA3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.233597464	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2019T1	chr1	40766307	PW2017tail	colon	sgMsh2	40766309	AGA	-	Deletion	Strelka2;Vardict	2	0.1226	106	0	0	NA	exonic	Slc9a2	nonframeshift deletion	Slc9a2:NM_001033289:exon11:c.2045_2047del:p.K686del	1qB	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.38858954	NA	NA	CAG	inframe	AGA	14	AGAAGAAGAAGAAG	-3
PW2019T1	chr1	46123657	PW2017tail	colon	sgMsh2	46123657	A	-	Deletion	Strelka2;Vardict	2	0.0559	340	0	0	NA	exonic	Dnah7b	frameshift deletion	Dnah7b:NM_001368717:exon11:c.1030delA:p.K346Sfs*21	1qC1.1	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.177179081	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2019T1	chr1	46665821	PW2017tail	colon	sgMsh2	46665821	G	T	SNV	Mutect2;MuSe;Vardict	3	0.066	416	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon41:c.G6993T:p.K2331N	1qC1.1	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.209191759	2	0.9989656	AGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	58001290	PW2017tail	colon	sgMsh2	58001290	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	223	0	0	NA	exonic	Sgo2a	nonsynonymous SNV	Sgo2a:NM_199007:exon4:c.T373C:p.S125P	1qC1.3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.256735341	2	0.999855	TTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	58210606	PW2017tail	colon	sgMsh2	58210606	T	-	Deletion	Strelka2;Vardict	2	0.0973	339	0	0	NA	exonic	Aox4	frameshift deletion	Aox4:NM_023631:exon1:c.32delT:p.F13Lfs*1	1qC1.3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.308399366	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW2019T1	chr1	71300953	PW2017tail	colon	sgMsh2	71300953	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.168	142	0	0	NA	exonic	Abca12	frameshift deletion	Abca12:NM_175210:exon23:c.3252delG:p.K1084Nfs*1	1qC3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.532488114	NA	NA	GCT	frameshift	T	5	TTTTT	-1
PW2019T1	chr1	72339015	PW2017tail	colon	sgMsh2	72339015	T	A	SNV	Mutect2;Vardict	2	0.04	131	0	0	NA	exonic	Xrcc5	nonsynonymous SNV	"Xrcc5:NM_001357519:exon11:c.T1112A:p.V371D,Xrcc5:NM_001357520:exon11:c.T1112A:p.V371D,Xrcc5:NM_009533:exon11:c.T1169A:p.V390D"	1qC3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.126782884	3	0.887267	GTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	80606258	PW2017tail	colon	sgMsh2	80606258	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	130	0	0	NA	exonic	Dock10	synonymous SNV	"Dock10:NM_001285927:exon6:c.C483T:p.G161G,Dock10:NM_175291:exon6:c.C519T:p.G173G"	1qC5	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.304278922	2	0.9997482	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr1	84749166	PW2017tail	colon	sgMsh2	84749166	A	-	Deletion	Mutect2;Vardict	2	0.067	120	0	0	NA	exonic	Trip12	frameshift deletion	Trip12:NM_133975:exon24:c.3682delT:p.S1228Lfs*12	1qC5	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.212361331	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr1	91091603	PW2017tail	colon	sgMsh2	91091603	C	T	SNV	Mutect2;Vardict	2	0.058	73	0	0	NA	exonic	Lrrfip1	nonsynonymous SNV	"Lrrfip1:NM_008515:exon9:c.C455T:p.A152V,Lrrfip1:NM_001310732:exon11:c.C560T:p.A187V"	1qD	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.183835182	2	0.751192	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	121554027	PW2017tail	colon	sgMsh2	121554027	T	C	SNV	Mutect2;Vardict	2	0.094	59	0	0	NA	exonic	Ddx18	nonsynonymous SNV	Ddx18:NM_025860:exon13:c.A1952G:p.K651R	1qE2.3	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.297939778	2	0.9831883	CTT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	133087046	PW2017tail	colon	sgMsh2	133087046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.216	54	0	0	NA	exonic	Pik3c2b	nonsynonymous SNV	Pik3c2b:NM_001099276:exon15:c.T2453C:p.L818P	1qE4	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.684627575	1	0.9970066	CTT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr1	162705332	PW2017tail	colon	sgMsh2	162705332	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	173	0	0	NA	exonic	Prrc2c	nonsynonymous SNV	Prrc2c:NM_001081290:exon16:c.C3713T:p.T1238M	1qH2.1	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.212361331	2	0.9738888	CGT	nonsynonymous	TGTCCG	13	TGTCCGTGTCCGT	NA
PW2019T1	chr1	176828917	PW2017tail	colon	sgMsh2	176828917	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	256	0	0	NA	exonic	Sdccag8	synonymous SNV	"Sdccag8:NM_001357390:exon4:c.C354T:p.L118L,Sdccag8:NM_029756:exon4:c.C354T:p.L118L"	1qH4	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.291600634	2	0.9999992	TCG	synonymous	NA	NA	NA	NA
PW2019T1	chr1	191163797	PW2017tail	colon	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.0929	140	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-4867294-193352278	2	2	0	0.631	2	NON-ABERRANT	1	0.294453249	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW2019T1	chr10	8298129	PW2017tail	colon	sgMsh2	8298129	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	102	0	0	NA	exonic	Ust	nonsynonymous SNV	Ust:NM_177387:exon5:c.G611A:p.R204H	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	2	0.9665591	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr10	11170288	PW2017tail	colon	sgMsh2	11170288	T	-	Deletion	Mutect2;Vardict	2	0.056	137	0	0	NA	exonic	Shprh	frameshift deletion	"Shprh:NM_001077707:exon13:c.2748delT:p.S918Pfs*19,Shprh:NM_001284354:exon13:c.2748delT:p.S918Pfs*19,Shprh:NM_172937:exon13:c.2748delT:p.S918Pfs*19"	10qA1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.177496038	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2019T1	chr10	39153273	PW2017tail	colon	sgMsh2	39153273	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	126	0	0	NA	exonic	Ccn6	nonsynonymous SNV	Ccn6:NM_001127376:exon4:c.T658C:p.S220P	10qB1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	2	0.5484087	GAG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr10	76382088	PW2017tail	colon	sgMsh2	76382088	G	A	SNV	Mutect2;Vardict	2	0.111	48	0	0	NA	exonic	Pcnt	nonsynonymous SNV	"Pcnt:NM_001282992:exon29:c.C6352T:p.P2118S,Pcnt:NM_008787:exon29:c.C6352T:p.P2118S"	10qC1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.351822504	2	0.9880429	GGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr10	77294952	PW2017tail	colon	sgMsh2	77294952	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.1	136	0	0	NA	exonic	Adarb1	frameshift deletion	"Adarb1:NM_001024837:exon11:c.1966delC:p.H656Tfs*68,Adarb1:NM_130895:exon11:c.1936delC:p.H646Tfs*68,Adarb1:NM_001024838:exon12:c.1918delC:p.H640Tfs*68"	10qC1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.316957211	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr10	78788983	PW2017tail	colon	sgMsh2	78788983	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	121	0	0	NA	exonic	Slc1a6	nonsynonymous SNV	Slc1a6:NM_009200:exon3:c.G221A:p.R74H	10qC1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.402535658	2	0.9995262	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr10	80525543	PW2017tail	colon	sgMsh2	80525543	C	T	SNV	Mutect2;Vardict	2	0.091	44	0	0	NA	exonic	Atp8b3	synonymous SNV	Atp8b3:NM_026094:exon22:c.G2544A:p.Q848Q	10qC1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	2	0.9554545	GCT	synonymous	NA	NA	NA	NA
PW2019T1	chr10	88755225	PW2017tail	colon	sgMsh2	88755225	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	259	0	0	NA	exonic	Utp20	synonymous SNV	Utp20:NM_175158:exon52:c.T6844C:p.L2282L	10qC1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.215530903	2	0.9952593	AAT	synonymous	NA	NA	NA	NA
PW2019T1	chr10	106869937	PW2017tail	colon	sgMsh2	106869937	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	118	0	0	NA	exonic	Ppfia2	synonymous SNV	"Ppfia2:NM_001359677:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359678:exon19:c.A2394G:p.G798G,Ppfia2:NM_001359679:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359680:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359681:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359682:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359683:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359684:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359685:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359686:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359687:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359688:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359689:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359690:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359691:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359692:exon19:c.A2397G:p.G799G,Ppfia2:NM_001359693:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359694:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359695:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359696:exon19:c.A2382G:p.G794G,Ppfia2:NM_001359697:exon19:c.A2385G:p.G795G,Ppfia2:NM_001359698:exon19:c.A2382G:p.G794G,Ppfia2:NM_001205341:exon21:c.A2607G:p.G869G,Ppfia2:NM_001359672:exon21:c.A2616G:p.G872G,Ppfia2:NM_001359673:exon21:c.A2607G:p.G869G,Ppfia2:NM_001359674:exon21:c.A2604G:p.G868G,Ppfia2:NM_001359675:exon21:c.A2607G:p.G869G,Ppfia2:NM_001359676:exon21:c.A2604G:p.G868G,Ppfia2:NM_177373:exon21:c.A2604G:p.G868G"	10qD1	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.209191759	2	0.9296601	GAA	synonymous	NA	NA	NA	NA
PW2019T1	chr10	121615116	PW2017tail	colon	sgMsh2	121615116	A	-	Deletion	Strelka2;Vardict	2	0.0774	168	0	0	NA	exonic	Xpot	frameshift deletion	"Xpot:NM_001081056:exon6:c.378delT:p.F126Lfs*8,Xpot:NM_001359618:exon6:c.378delT:p.F126Lfs*8"	10qD2	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.245324881	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW2019T1	chr10	130075190	PW2017tail	colon	sgMsh2	130075190	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.052	492	0	0	NA	exonic	Olfr822	nonsynonymous SNV	Olfr822:NM_146671:exon1:c.C779T:p.P260L	10qD3	chr10-4453448-130453386	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	3	0.8586513	CCA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr11	4722486	PW2017tail	colon	sgMsh2	4722486	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	91	0	0	NA	exonic	Zmat5	nonsynonymous SNV	"Zmat5:NM_001356390:exon2:c.G102T:p.K34N,Zmat5:NM_026015:exon2:c.G102T:p.K34N"	11qA1	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	2	0.9510714	AGA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr11	34207528	PW2017tail	colon	sgMsh2	34207528	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	132	0	0	NA	exonic	Foxi1	nonsynonymous SNV	Foxi1:NM_023907:exon1:c.C496T:p.R166C	11qA4	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	2	0.5402832	CGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr11	46528650	PW2017tail	colon	sgMsh2	46528650	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.09	230	0	0	NA	exonic	Gm12169	nonsynonymous SNV	Gm12169:NM_001163357:exon3:c.G292A:p.A98T	11qB1.1	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.28526149	2	0.999994	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr11	59115748	PW2017tail	colon	sgMsh2	59115748	A	C	SNV	Mutect2;MuSe;Vardict	3	0.091	187	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon11:c.T3587G:p.L1196R,Obscn:NM_199152:exon11:c.T3662G:p.L1221R"	11qB1.3	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	2	0.9999631	CAG	nonsynonymous	CAC	8	CACCACCA	NA
PW2019T1	chr11	69314742	PW2017tail	colon	sgMsh2	69314743	TC	-	Deletion	Strelka2;Vardict	2	0.0769	65	0	0	NA	exonic	Cntrob	frameshift deletion	Cntrob:NM_172560:exon9:c.1264_1265del:p.D422Cfs*13	11qB3	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.243740095	NA	NA	ATC	frameshift	TC	12	TCTCTCTCTCTC	-2
PW2019T1	chr11	70247044	PW2017tail	colon	sgMsh2	70247044	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	52	0	0	NA	exonic	Alox12	synonymous SNV	"Alox12:NM_001331118:exon10:c.C780T:p.G260G,Alox12:NM_007440:exon10:c.C1269T:p.G423G"	11qB3	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.516640254	2	9.41E-05	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr11	116023452	PW2017tail	colon	sgMsh2	116023452	G	T	SNV	Mutect2;Vardict	2	0.063	174	0	0	NA	exonic	H3f3b	synonymous SNV	H3f3b:NM_008211:exon4:c.C366A:p.P122P	11qE2	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.199683043	2	0.9338503	TGG	synonymous	NA	NA	NA	NA
PW2019T1	chr11	116023462	PW2017tail	colon	sgMsh2	116023462	G	T	SNV	Mutect2;Vardict	2	0.054	182	0	0	NA	exonic	H3f3b	nonsynonymous SNV	H3f3b:NM_008211:exon4:c.C356A:p.T119N	11qE2	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.171156894	2	0.5998542	GGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr11	116070339	PW2017tail	colon	sgMsh2	116070339	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	80	0	0	NA	exonic	Unc13d	synonymous SNV	Unc13d:NM_001009573:exon15:c.C1191A:p.S397S	11qE2	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.269413629	2	0.9850859	AGG	synonymous	NA	NA	NA	NA
PW2019T1	chr11	118177288	PW2017tail	colon	sgMsh2	118177288	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	108	0	0	NA	exonic	Cyth1	nonsynonymous SNV	"Cyth1:NM_001112699:exon10:c.G820T:p.V274L,Cyth1:NM_001112700:exon10:c.G829T:p.V277L,Cyth1:NM_001378885:exon10:c.G826T:p.V276L,Cyth1:NM_001378886:exon10:c.G643T:p.V215L,Cyth1:NM_011180:exon10:c.G823T:p.V275L"	11qE2	chr11-3133205-121426601	2	1	1	0.631	2	NON-ABERRANT	1	0.332805071	2	0.9997731	ACC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	3501425	PW2017tail	colon	sgMsh2	3501425	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.063	214	0	0	NA	exonic	Asxl2	nonsynonymous SNV	"Asxl2:NM_172421:exon11:c.A3166G:p.T1056A,Asxl2:NM_001270988:exon12:c.A3310G:p.T1104A"	12qA1.1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.199683043	2	0.9549198	GAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	51623268	PW2017tail	colon	sgMsh2	51623268	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.098	121	0	0	NA	exonic	Strn3	frameshift deletion	"Strn3:NM_001172098:exon12:c.1541delA:p.N514Tfs*41,Strn3:NM_001364437:exon13:c.1682delA:p.N561Tfs*41,Strn3:NM_052973:exon14:c.1793delA:p.N598Tfs*41"	12qB3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.310618067	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr12	52181131	PW2017tail	colon	sgMsh2	52181131	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	260	0	0	NA	exonic	Nubpl	nonsynonymous SNV	Nubpl:NM_029760:exon5:c.G422A:p.C141Y	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.082408875	3	0.99996	TGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	55861156	PW2017tail	colon	sgMsh2	55861156	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	92	0	0	NA	exonic	Brms1l	nonsynonymous SNV	Brms1l:NM_001037756:exon6:c.C607T:p.P203S	12qC1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	2	0.5296798	GCC	nonsynonymous	AAG	9	AAGAAGAAG	NA
PW2019T1	chr12	69341033	PW2017tail	colon	sgMsh2	69341033	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	109	0	0	NA	exonic	Nemf	nonsynonymous SNV	Nemf:NM_025441:exon14:c.G1276A:p.A426T	12qC2	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.269413629	2	0.9954579	GCA	nonsynonymous	CATCAC	16	CATCACCATCACCATC	NA
PW2019T1	chr12	70227360	PW2017tail	colon	sgMsh2	70227360	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	88	0	0	NA	exonic	Pygl	nonsynonymous SNV	Pygl:NM_133198:exon1:c.A224G:p.Y75C	12qC2	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.24088748	2	0.967637	GTA	nonsynonymous	GTA	8	GTAGTAGT	NA
PW2019T1	chr12	79055318	PW2017tail	colon	sgMsh2	79055319	AG	-	Deletion	Strelka2;Vardict	2	0.0891	101	0	0	NA	exonic	Plekhh1	frameshift deletion	Plekhh1:NM_181073:exon7:c.1161_1162del:p.S391Pfs*6	12qC3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.282408875	NA	NA	AAG	frameshift	AG	12	AGAGAGAGAGAG	-2
PW2019T1	chr12	91647559	PW2017tail	colon	sgMsh2	91647559	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	146	0	0	NA	exonic	Ston2	nonsynonymous SNV	Ston2:NM_175367:exon5:c.A2074C:p.S692R	12qD3	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	2	0.9904502	CTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	105592009	PW2017tail	colon	sgMsh2	105592009	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	140	0	0	NA	exonic	Bdkrb2	nonsynonymous SNV	Bdkrb2:NM_009747:exon3:c.C508T:p.R170C	12qE	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	3	0.5694017	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	111242475	PW2017tail	colon	sgMsh2	111242475	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	357	0	0	NA	exonic	Traf3	nonsynonymous SNV	"Traf3:NM_001286122:exon4:c.T327G:p.I109M,Traf3:NM_001364364:exon5:c.T327G:p.I109M,Traf3:NM_011632:exon5:c.T327G:p.I109M"	12qF1	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	2	0.9998075	TTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr12	117877476	PW2017tail	colon	sgMsh2	117877476	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	192	0	0	NA	exonic	Cdca7l	synonymous SNV	Cdca7l:NM_146040:exon10:c.G1308A:p.K436K	12qF2	chr12-3237715-119177194	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	2	0.996142	AGC	synonymous	NA	NA	NA	NA
PW2019T1	chr13	13648905	PW2017tail	colon	sgMsh2	13648905	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.144	106	0	0	NA	exonic	Lyst	frameshift deletion	Lyst:NM_010748:exon12:c.4461delA:p.R1489Efs*1	13qA1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.456418384	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr13	13743326	PW2017tail	colon	sgMsh2	13743326	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.034	200	0	0	NA	exonic	Lyst	nonsynonymous SNV	Lyst:NM_010748:exon44:c.A9970G:p.I3324V	13qA1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.107765452	3	0.9951157	CAT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	19729390	PW2017tail	colon	sgMsh2	19729390	A	-	Deletion	Strelka2;Vardict	2	0.0966	145	0	0	NA	exonic	Gpr141b	frameshift deletion	Gpr141b:NM_175688:exon2:c.491delT:p.L164Yfs*29	13qA2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.306180666	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2019T1	chr13	23570726	PW2017tail	colon	sgMsh2	23570726	T	C	SNV	Mutect2;Vardict	2	0.027	353	0	0	NA	exonic	H2ac8	nonsynonymous SNV	H2ac8:NM_178187:exon1:c.A383G:p.K128R	13qA3.1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.085578447	3	0.9999987	CTT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	25005016	PW2017tail	colon	sgMsh2	25005016	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.07	158	0	0	NA	exonic	Mrs2	nonsynonymous SNV	Mrs2:NM_001013389:exon4:c.A314G:p.Q105R	13qA3.1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.221870048	2	0.9829443	CTG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	46709635	PW2017tail	colon	sgMsh2	46709635	T	-	Deletion	Mutect2;Vardict	2	0.043	290	0	0	NA	exonic	Nup153	frameshift deletion	Nup153:NM_175749:exon8:c.1065delA:p.E356Kfs*12	13qA5	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	NA	NA	CTT	frameshift	CTTTT	10	CTTTTCTTTT	-1
PW2019T1	chr13	61536649	PW2017tail	colon	sgMsh2	61536649	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	134	0	0	NA	exonic	Ctsm	nonsynonymous SNV	"Ctsm:NM_001360721:exon8:c.G908A:p.G303D,Ctsm:NM_022326:exon8:c.G908A:p.G303D"	13qB2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.431061807	2	0.9964177	ACC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	81433470	PW2017tail	colon	sgMsh2	81433470	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.095	81	0	0	NA	exonic	Adgrv1	synonymous SNV	Adgrv1:NM_054053:exon70:c.C14454T:p.T4818T	13qC3	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.30110935	2	0.9954076	CGG	synonymous	NA	NA	NA	NA
PW2019T1	chr13	98755168	PW2017tail	colon	sgMsh2	98755168	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.08	128	0	0	NA	exonic	Fcho2	nonsynonymous SNV	Fcho2:NM_172591:exon13:c.C1085T:p.A362V	13qD1	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.253565769	2	0.9948707	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	111255589	PW2017tail	colon	sgMsh2	111255589	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	285	0	0	NA	exonic	Actbl2	nonsynonymous SNV	Actbl2:NM_175497:exon1:c.G457A:p.V153M	13qD2.2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.30110935	2	0.9999999	CGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr13	113967737	PW2017tail	colon	sgMsh2	113967737	T	-	Deletion	Mutect2;Vardict	2	0.084	107	0	0	NA	exonic	Arl15	frameshift deletion	Arl15:NM_172595:exon4:c.409delT:p.L138fs*0	13qD2.2	chr13-3556909-119495179	2	1	1	0.631	2	NON-ABERRANT	1	0.266244057	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr14	7948519	PW2017tail	colon	sgMsh2	7948519	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	89	0	0	NA	exonic	Flnb	nonsynonymous SNV	"Flnb:NM_001081427:exon45:c.C7493T:p.T2498M,Flnb:NM_134080:exon45:c.C7460T:p.T2487M"	14qA1	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.30110935	2	0.9970527	ACG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr14	32663491	PW2017tail	colon	sgMsh2	32663491	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.073	144	0	0	NA	exonic	3425401B19Rik	nonsynonymous SNV	3425401B19Rik:NM_001195097:exon4:c.T516A:p.N172K	14qB	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	2	0.987701	GAT	nonsynonymous	T	5	TTTTT	NA
PW2019T1	chr14	46384278	PW2017tail	colon	sgMsh2	46384278	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	83	0	0	NA	exonic	Bmp4	nonsynonymous SNV	"Bmp4:NM_001316360:exon3:c.C808T:p.R270W,Bmp4:NM_007554:exon4:c.C808T:p.R270W"	14qC1	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	2	0.9534436	CGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr14	52149620	PW2017tail	colon	sgMsh2	52149620	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.125	89	0	0	NA	exonic	Rpgrip1	frameshift deletion	"Rpgrip1:NM_001168515:exon18:c.2395delT:p.S801Pfs*4,Rpgrip1:NM_023879:exon18:c.3007delT:p.S1005Pfs*4"	14qC2	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr14	55075066	PW2017tail	colon	sgMsh2	55075066	C	-	Deletion	Mutect2;Vardict	2	0.121	41	0	0	NA	exonic	Zfhx2	frameshift deletion	Zfhx2:NM_001039198:exon2:c.170delG:p.G57Efs*189	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.383518225	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr14	55513813	PW2017tail	colon	sgMsh2	55513813	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	111	0	0	NA	exonic	Cpne6	frameshift deletion	"Cpne6:NM_001136057:exon7:c.589delA:p.N198Tfs*2,Cpne6:NM_001146183:exon7:c.589delA:p.N198Tfs*2,Cpne6:NM_001360193:exon7:c.589delA:p.N198Tfs*2,Cpne6:NM_009947:exon7:c.589delA:p.N198Tfs*2"	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.415213946	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr14	55739610	PW2017tail	colon	sgMsh2	55739610	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	187	0	0	NA	exonic	Dhrs1	synonymous SNV	Dhrs1:NM_026819:exon8:c.C747T:p.S249S	14qC3	chr14-3072210-123348696	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	2	0.9943296	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr15	33381383	PW2017tail	colon	sgMsh2	33381383	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	74	0	0	NA	exonic	Cpq	synonymous SNV	"Cpq:NM_176073:exon5:c.T891C:p.G297G,Cpq:NM_018755:exon6:c.T891C:p.G297G"	15qB3.1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.278922345	2	0.9860308	GTG	synonymous	NA	NA	NA	NA
PW2019T1	chr15	64124832	PW2017tail	colon	sgMsh2	64124832	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	174	0	0	NA	exonic	Asap1	synonymous SNV	"Asap1:NM_001276462:exon17:c.C1656T:p.S552S,Asap1:NM_001276463:exon17:c.C1620T:p.S540S,Asap1:NM_001276461:exon19:c.C1716T:p.S572S,Asap1:NM_001276467:exon20:c.C1725T:p.S575S,Asap1:NM_010026:exon20:c.C1725T:p.S575S"	15qD1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.282091918	2	0.9998844	AGG	synonymous	NA	NA	NA	NA
PW2019T1	chr15	79151632	PW2017tail	colon	sgMsh2	79151632	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	153	0	0	NA	exonic	Polr2f	nonsynonymous SNV	Polr2f:NM_027231:exon5:c.G337T:p.G113C	15qE1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.202852615	2	0.9340975	CGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr15	80355665	PW2017tail	colon	sgMsh2	80355665	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	108	0	0	NA	exonic	Cacna1i	nonsynonymous SNV	Cacna1i:NM_001044308:exon7:c.G914A:p.R305H	15qE1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	2	0.9995885	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr15	83324107	PW2017tail	colon	sgMsh2	83324107	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	100	0	0	NA	exonic	Arfgap3	frameshift deletion	"Arfgap3:NM_001357756:exon8:c.672delA:p.G225Dfs*13,Arfgap3:NM_001357757:exon8:c.669delA:p.G224Dfs*13,Arfgap3:NM_025445:exon8:c.669delA:p.G224Dfs*13"	15qE1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.256735341	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr15	83608246	PW2017tail	colon	sgMsh2	83608246	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	204	0	0	NA	exonic	Scube1	nonsynonymous SNV	"Scube1:NM_001271473:exon19:c.C2543T:p.A848V,Scube1:NM_022723:exon21:c.C2786T:p.A929V,Scube1:NM_001271472:exon22:c.C2876T:p.A959V"	15qE1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.129952456	3	0.9681706	GGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr15	85816234	PW2017tail	colon	sgMsh2	85816234	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.071	161	0	0	NA	exonic	Pkdrej	frameshift deletion	Pkdrej:NM_011105:exon1:c.5500delA:p.T1834Pfs*33	15qE2	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr15	90966418	PW2017tail	colon	sgMsh2	90966418	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	172	0	0	NA	exonic	Kif21a	synonymous SNV	"Kif21a:NM_001109041:exon21:c.T3039C:p.D1013D,Kif21a:NM_001109042:exon21:c.T3039C:p.D1013D,Kif21a:NM_001358050:exon21:c.T3039C:p.D1013D,Kif21a:NM_016705:exon21:c.T3039C:p.D1013D,Kif21a:NM_001109040:exon22:c.T3078C:p.D1026D"	15qE3	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	3	0.5142259	CAT	synonymous	NA	NA	NA	NA
PW2019T1	chr15	95972590	PW2017tail	colon	sgMsh2	95972590	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.063	140	0	0	NA	exonic	Ano6	synonymous SNV	"Ano6:NM_175344:exon20:c.G2625A:p.T875T,Ano6:NM_001253813:exon21:c.G2688A:p.T896T"	15qF1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.199683043	2	0.09091831	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr15	101198793	PW2017tail	colon	sgMsh2	101198793	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.114	61	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon4:c.590delT:p.F198Lfs*35	15qF1	chr15-3327923-103525164	2	1	1	0.631	2	NON-ABERRANT	1	0.36133122	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr16	17258565	PW2017tail	colon	sgMsh2	17258565	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.1	61	0	0	NA	exonic	Hic2	frameshift deletion	Hic2:NM_178922:exon3:c.1257delG:p.G421Afs*112	16qA3	chr16-3948854-97560961	2	1	1	0.631	2	NON-ABERRANT	1	0.316957211	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr16	77075338	PW2017tail	colon	sgMsh2	77075338	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	171	0	0	NA	exonic	Usp25	nonsynonymous SNV	Usp25:NM_013918:exon12:c.C1276A:p.L426I	16qC3.1	chr16-3948854-97560961	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.09667643	CCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	5975805	PW2017tail	colon	sgMsh2	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	237	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.705229794	1	1	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2019T1	chr17	17893301	PW2017tail	colon	sgMsh2	17893301	T	A	SNV	Mutect2;Vardict	2	0.021	420	0	0	NA	exonic	Fpr2	synonymous SNV	Fpr2:NM_008039:exon2:c.T558A:p.T186T	17qA3.2	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.066561014	3	3.32E-09	CTG	synonymous	NA	NA	NA	NA
PW2019T1	chr17	19379117	PW2017tail	colon	sgMsh2	19379117	G	A	SNV	Mutect2;Vardict	2	0.018	571	0	0	NA	exonic	Vmn2r99	stopgain	Vmn2r99:NM_001104551:exon3:c.G1062A:p.W354X	17qA3.2	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.057052298	3	1.00E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	22340971	PW2017tail	colon	sgMsh2	22340971	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.115	353	0	0	NA	exonic	Zfp944	frameshift deletion	"Zfp944:NM_176962:exon5:c.153delT:p.F51Lfs*26,Zfp944:NM_001355280:exon6:c.153delT:p.F51Lfs*26"	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.364500792	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr17	23291142	PW2017tail	colon	sgMsh2	23291142	C	T	SNV	Mutect2;MuSe;Vardict	3	0.043	544	0	0	NA	exonic	Vmn2r114	nonsynonymous SNV	Vmn2r114:NM_001102584:exon6:c.G2363A:p.C788Y	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.9998807	GCA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	25377634	PW2017tail	colon	sgMsh2	25377634	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	100	0	0	NA	exonic	Cacna1h	nonsynonymous SNV	"Cacna1h:NM_001163691:exon32:c.G5504T:p.S1835I,Cacna1h:NM_021415:exon32:c.G5504T:p.S1835I"	17qA3.3	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.272583201	2	0.9942881	GCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	33913908	PW2017tail	colon	sgMsh2	33913908	C	-	Deletion	Strelka2;Vardict	2	0.0638	94	0	0	NA	exonic	Daxx	frameshift deletion	"Daxx:NM_001199733:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_001355704:exon7:c.2009delC:p.L673Wfs*21,Daxx:NM_007829:exon7:c.2009delC:p.L673Wfs*21"	17qB1	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.2022187	NA	NA	TCC	frameshift	C	8	CCCCCCCC	-1
PW2019T1	chr17	35857629	PW2017tail	colon	sgMsh2	35857629	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	80	0	0	NA	exonic	Mdc1	nonframeshift deletion	Mdc1:NM_001010833:exon16:c.5126delA:p.X1709X	17qB1	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.297939778	NA	NA	TAA	inframe	A	5	AAAAA	-1
PW2019T1	chr17	36772979	PW2017tail	colon	sgMsh2	36772979	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	219	0	0	NA	exonic	H2-M10.5	nonsynonymous SNV	H2-M10.5:NM_177637:exon1:c.G70T:p.G24C	17qB1	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.129952456	3	0.976592	AGG	nonsynonymous	GGTG	8	GGTGGGTG	NA
PW2019T1	chr17	37752574	PW2017tail	colon	sgMsh2	37752574	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	610	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.G719A:p.R240H	17qB1	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.374009509	2	1	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	46222740	PW2017tail	colon	sgMsh2	46222740	T	-	Deletion	Strelka2;Vardict	2	0.0904	177	0	0	NA	exonic	Xpo5	frameshift deletion	Xpo5:NM_028198:exon14:c.1521delT:p.L510Wfs*3	17qC	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.286529319	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW2019T1	chr17	53462753	PW2017tail	colon	sgMsh2	53462753	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	147	0	0	NA	exonic	Efhb	nonsynonymous SNV	Efhb:NM_172497:exon1:c.C527A:p.A176D	17qC	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.282091918	2	0.9995886	AGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr17	68462959	PW2017tail	colon	sgMsh2	68462959	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	238	0	0	NA	exonic	L3mbtl4	synonymous SNV	L3mbtl4:NM_177278:exon10:c.C723T:p.S241S	17qE1.2	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.110935024	3	0.9978859	GCC	synonymous	NA	NA	NA	NA
PW2019T1	chr17	75226973	PW2017tail	colon	sgMsh2	75226973	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.06	173	0	0	NA	exonic	Ltbp1	frameshift insertion	"Ltbp1:NM_001331233:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_001331234:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_001331235:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_001331236:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_001331237:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_206958:exon3:c.456dupC:p.N155Qfs*23,Ltbp1:NM_019919:exon7:c.1410dupC:p.N473Qfs*23"	17qE2	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.190174326	NA	NA	TTC	frameshift	C	5	CCCCC	1
PW2019T1	chr17	87718638	PW2017tail	colon	sgMsh2	87718638	-	A	Insertion	Mutect2;Vardict	2	0.249	64	0	0	NA	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3505882-90208269	2	1	1	0.631	2	NON-ABERRANT	1	0.789223455	NA	NA	AGA	frameshift	NA	NA	NA	1
PW2019T1	chr18	4674314	PW2017tail	colon	sgMsh2	4674314	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	77	0	0	NA	exonic	Jcad	nonsynonymous SNV	Jcad:NM_001081963:exon3:c.C2075G:p.T692S	18qA1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.187004754	2	0.7731914	ACC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr18	7916217	PW2017tail	colon	sgMsh2	7916217	T	-	Deletion	Mutect2;Vardict	2	0.058	120	0	0	NA	exonic	Wac	frameshift deletion	"Wac:NM_001146298:exon7:c.776delT:p.F260Lfs*23,Wac:NM_001282093:exon8:c.950delT:p.F318Lfs*23,Wac:NM_001360956:exon8:c.950delT:p.F318Lfs*23,Wac:NM_153085:exon8:c.1085delT:p.F363Lfs*23"	18qA1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.183835182	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr18	16622232	PW2017tail	colon	sgMsh2	16622232	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	179	0	0	NA	exonic	Cdh2	nonsynonymous SNV	Cdh2:NM_007664:exon14:c.C2245T:p.R749W	18qA1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.101426307	3	0.9943688	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr18	34312297	PW2017tail	colon	sgMsh2	34312322	TCCCTTCACGTTAGGAAACAGAAAGC	-	Deletion	Strelka2;Vardict	2	0.234	141	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2068_2093del:p.L691Rfs*2,Apc:NM_007462:exon16:c.2245_2270del:p.L750Rfs*2,Apc:NM_001360980:exon17:c.2299_2324del:p.L768Rfs*2"	18qB1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.741679873	NA	NA	ATC	frameshift	NA	NA	NA	-26
PW2019T1	chr18	34312436	PW2017tail	colon	sgMsh2	34312436	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	297	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.G2207A:p.G736D,Apc:NM_007462:exon16:c.G2384A:p.G795D,Apc:NM_001360980:exon17:c.G2438A:p.G813D"	18qB1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	3	0.6768699	GGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr18	34314826	PW2017tail	colon	sgMsh2	34314826	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	149	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.C4597A:p.L1533I,Apc:NM_007462:exon16:c.C4774A:p.L1592I,Apc:NM_001360980:exon17:c.C4828A:p.L1610I"	18qB1	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.431061807	2	0.997561	ACT	nonsynonymous	A	6	AAAAAA	NA
PW2019T1	chr18	37506793	PW2017tail	colon	sgMsh2	37506793	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	92	0	0	NA	exonic	Pcdhb20	nonsynonymous SNV	Pcdhb20:NM_053145:exon1:c.C2371T:p.R791C	18qB3	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.250396197	2	0.980232	TCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr18	57180510	PW2017tail	colon	sgMsh2	57180510	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	134	0	0	NA	exonic	Megf10	synonymous SNV	Megf10:NM_001001979:exon2:c.C25T:p.L9L	18qD3	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.36133122	2	0.9999875	CCT	synonymous	NA	NA	NA	NA
PW2019T1	chr18	59410174	PW2017tail	colon	sgMsh2	59410174	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	160	0	0	NA	exonic	Chsy3	nonsynonymous SNV	Chsy3:NM_001081328:exon3:c.G2383A:p.A795T	18qD3	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.231378764	2	0.9916338	TGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr18	60245759	PW2017tail	colon	sgMsh2	60245759	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.107	113	0	0	NA	exonic	Gm4951	frameshift deletion	Gm4951:NM_001033767:exon3:c.365delT:p.W124Gfs*19	18qD3	chr18-3325290-84965412	2	1	1	0.631	2	NON-ABERRANT	1	0.339144216	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr19	3652305	PW2017tail	colon	sgMsh2	3652305	C	-	Deletion	Strelka2;Vardict	2	0.1818	44	0	0	NA	exonic	Lrp5	frameshift deletion	Lrp5:NM_008513:exon3:c.511delG:p.E171Kfs*18	19qA	NA	NA	NA	NA	0.631	2	NON-ABERRANT	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr19	12626917	PW2017tail	colon	sgMsh2	12626917	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	121	0	0	NA	exonic	Gm4952	nonsynonymous SNV	"Gm4952:NM_001013762:exon6:c.C692T:p.A231V,Gm4952:NM_001167907:exon6:c.C692T:p.A231V"	19qA	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.250396197	2	0.9922798	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr19	29716552	PW2017tail	colon	sgMsh2	29716552	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.066	196	0	0	NA	exonic	9930021J03Rik	nonsynonymous SNV	9930021J03Rik:NM_172836:exon8:c.C5741A:p.P1914H	19qC1	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.209191759	2	0.975984	GGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr19	39703466	PW2017tail	colon	sgMsh2	39703466	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.084	309	0	0	NA	exonic	Cyp2c68	frameshift insertion	Cyp2c68:NM_001039555:exon7:c.1011_1012insA:p.C338Mfs*16	19qC3	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.266244057	NA	NA	CAG	frameshift	NA	NA	NA	1
PW2019T1	chr19	41274343	PW2017tail	colon	sgMsh2	41274343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	94	0	0	NA	exonic	Pik3ap1	nonsynonymous SNV	Pik3ap1:NM_031376:exon17:c.C2389T:p.R797W	19qC3	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.415213946	2	0.9963725	CGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr19	56793504	PW2017tail	colon	sgMsh2	56793504	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.079	82	0	0	NA	exonic	Ccdc186	nonsynonymous SNV	Ccdc186:NM_170757:exon14:c.T2242C:p.S748P	19qD2	chr19-4352434-60987573	2	1	1	0.631	2	NON-ABERRANT	1	0.250396197	2	0.9727556	GAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	25939489	PW2017tail	colon	sgMsh2	25939489	A	G	SNV	Mutect2;Vardict	2	0.065	162	0	0	NA	exonic	Camsap1	nonsynonymous SNV	"Camsap1:NM_001276359:exon11:c.T2222C:p.V741A,Camsap1:NM_001276360:exon12:c.T2255C:p.V752A,Camsap1:NM_001276361:exon12:c.T2282C:p.V761A,Camsap1:NM_001372499:exon12:c.T2255C:p.V752A"	2qA3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.206022187	2	0.9519051	TAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	28911516	PW2017tail	colon	sgMsh2	28911516	G	-	Deletion	Strelka2;Vardict	2	0.0741	54	0	0	NA	exonic	Barhl1	frameshift deletion	"Barhl1:NM_001355435:exon2:c.86delC:p.P29Rfs*3,Barhl1:NM_019446:exon2:c.515delC:p.P172Rfs*3,Barhl1:NM_001164186:exon3:c.515delC:p.P172Rfs*3,Barhl1:NM_001355434:exon4:c.515delC:p.P172Rfs*3"	2qA3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.234865293	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr2	35718786	PW2017tail	colon	sgMsh2	35718786	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	89	0	0	NA	exonic	Dab2ip	synonymous SNV	"Dab2ip:NM_001001602:exon9:c.G1731A:p.L577L,Dab2ip:NM_001290639:exon9:c.G1554A:p.L518L,Dab2ip:NM_001290640:exon9:c.G1695A:p.L565L,Dab2ip:NM_001114124:exon11:c.G1926A:p.L642L,Dab2ip:NM_001114125:exon11:c.G1842A:p.L614L,Dab2ip:NM_001290637:exon11:c.G1755A:p.L585L,Dab2ip:NM_001290641:exon11:c.G1554A:p.L518L"	2qB	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.427892235	2	0.9906485	TGC	synonymous	NA	NA	NA	NA
PW2019T1	chr2	48898564	PW2017tail	colon	sgMsh2	48898564	A	-	Deletion	Strelka2;Vardict	2	0.1568	185	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.496988906	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2019T1	chr2	62552302	PW2017tail	colon	sgMsh2	62552302	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	184	0	0	NA	exonic	Fap	nonsynonymous SNV	Fap:NM_007986:exon6:c.A385C:p.T129P	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.183835182	2	0.8090292	GTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	65764447	PW2017tail	colon	sgMsh2	65764447	T	C	SNV	Mutect2;Vardict	2	0.02	320	0	0	NA	exonic	Scn2a	nonsynonymous SNV	"Scn2a:NM_001099298:exon27:c.T5639C:p.M1880T,Scn2a:NM_001346679:exon27:c.T5639C:p.M1880T,Scn2a:NM_001346680:exon27:c.T5639C:p.M1880T"	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.063391442	3	0.9999998	ATG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	66483627	PW2017tail	colon	sgMsh2	66483627	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.056	161	0	0	NA	exonic	Scn9a	stopgain	"Scn9a:NM_001290674:exon27:c.A5746T:p.K1916X,Scn9a:NM_001290675:exon27:c.A5713T:p.K1905X"	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.177496038	2	0.7143756	TTT	nonsynonymous	TA	10	TATATATATA	NA
PW2019T1	chr2	67508258	PW2017tail	colon	sgMsh2	67508258	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.079	127	0	0	NA	exonic	Xirp2	frameshift insertion	"Xirp2:NM_001024618:exon7:c.843dupA:p.N283Kfs*8,Xirp2:NM_001083919:exon7:c.843dupA:p.N283Kfs*8"	2qC1.3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.250396197	NA	NA	AGA	frameshift	A	5	AAAAA	1
PW2019T1	chr2	71137530	PW2017tail	colon	sgMsh2	71137530	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	139	0	0	NA	exonic	Cybrd1	synonymous SNV	Cybrd1:NM_028593:exon3:c.G444A:p.P148P	2qC2	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.152139461	3	0.6604923	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr2	73343630	PW2017tail	colon	sgMsh2	73343630	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.071	159	0	0	NA	exonic	Gpr155	frameshift deletion	"Gpr155:NM_001276444:exon16:c.2350delG:p.V784Sfs*33,Gpr155:NM_001190297:exon17:c.2434delG:p.V812Sfs*33"	2qC3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.22503962	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW2019T1	chr2	85992736	PW2017tail	colon	sgMsh2	85992736	-	A	Insertion	Mutect2;Vardict	2	0.072	111	0	0	NA	exonic	Olfr1031	frameshift insertion	Olfr1031:NM_001011759:exon1:c.919dupA:p.M309Nfs*4	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	NA	NA	ACA	frameshift	A	5	AAAAA	1
PW2019T1	chr2	86041667	PW2017tail	colon	sgMsh2	86041667	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.08	613	0	0	NA	exonic	Olfr1033	frameshift deletion	Olfr1033:NM_146578:exon3:c.351delT:p.F118Lfs*34	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.253565769	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW2019T1	chr2	86160014	PW2017tail	colon	sgMsh2	86160014	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	322	0	0	NA	exonic	Olfr1042	nonsynonymous SNV	Olfr1042:NM_001011777:exon1:c.G355A:p.A119T	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.190174326	2	0.9414992	GCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	86639395	PW2017tail	colon	sgMsh2	86639395	A	-	Deletion	Mutect2;Vardict	2	0.049	368	0	0	NA	exonic	Olfr1084	frameshift deletion	Olfr1084:NM_207135:exon1:c.312delT:p.L105Ffs*39	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.155309033	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr2	87002644	PW2017tail	colon	sgMsh2	87002644	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	319	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.T674C:p.I225T	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.142630745	3	0.98249	ATT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	87896180	PW2017tail	colon	sgMsh2	87896180	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	167	0	0	NA	exonic	Olfr1153	stopgain	Olfr1153:NM_146640:exon1:c.C4T:p.Q2X	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.167987322	2	0.5516379	GCA	nonsynonymous	TGCA	8	TGCATGCA	NA
PW2019T1	chr2	88559820	PW2017tail	colon	sgMsh2	88559820	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	288	0	0	NA	exonic	Olfr1188	nonsynonymous SNV	Olfr1188:NM_146919:exon1:c.T350G:p.I117S	2qD	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.215530903	2	0.9971189	ATT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	89170901	PW2017tail	colon	sgMsh2	89170901	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	485	0	0	NA	exonic	Olfr1225	nonsynonymous SNV	Olfr1225:NM_146891:exon1:c.C310T:p.H104Y	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.079239303	3	2.46E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	89406966	PW2017tail	colon	sgMsh2	89406966	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	312	0	0	NA	exonic	Olfr1238	nonsynonymous SNV	Olfr1238:NM_146790:exon1:c.G112A:p.V38M	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	2	1.87E-09	ACC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	94378697	PW2017tail	colon	sgMsh2	94378697	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	248	0	0	NA	exonic	Ttc17	nonsynonymous SNV	"Ttc17:NM_001355690:exon3:c.G411T:p.K137N,Ttc17:NM_001355691:exon3:c.G411T:p.K137N,Ttc17:NM_183106:exon3:c.G411T:p.K137N"	2qE1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.218700475	2	0.9959662	CCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	140124966	PW2017tail	colon	sgMsh2	140124966	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.04	275	0	0	NA	exonic	Esf1	nonsynonymous SNV	Esf1:NM_001081090:exon12:c.G2059A:p.A687T	2qF3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.126782884	3	0.9950369	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	153399446	PW2017tail	colon	sgMsh2	153399446	G	-	Deletion	Strelka2;Vardict	2	0.2667	90	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.845324881	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW2019T1	chr2	155550121	PW2017tail	colon	sgMsh2	155550121	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	109	0	0	NA	exonic	Acss2	frameshift deletion	Acss2:NM_019811:exon6:c.662delA:p.K222Nfs*2	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.263074485	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr2	156078230	PW2017tail	colon	sgMsh2	156078230	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	252	0	0	NA	exonic	Cpne1	nonsynonymous SNV	"Cpne1:NM_170590:exon8:c.C628T:p.R210C,Cpne1:NM_170588:exon9:c.C628T:p.R210C"	2qH1	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.976134	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr2	164989016	PW2017tail	colon	sgMsh2	164989016	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	53	0	0	NA	exonic	Slc12a5	frameshift deletion	"Slc12a5:NM_001355480:exon16:c.1991delG:p.D666Mfs*51,Slc12a5:NM_001355481:exon16:c.1991delG:p.D666Mfs*51,Slc12a5:NM_020333:exon16:c.1922delG:p.D643Mfs*51"	2qH3	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.320126783	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr2	179926228	PW2017tail	colon	sgMsh2	179926228	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.07	119	0	0	NA	exonic	Taf4	frameshift deletion	Taf4:NM_001081092:exon9:c.2345delG:p.G782Efs*18	2qH4	chr2-4513773-181511691	2	1	1	0.631	2	NON-ABERRANT	1	0.221870048	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr3	10434461	PW2017tail	colon	sgMsh2	10434461	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	72	0	0	NA	exonic	Snx16	nonsynonymous SNV	"Snx16:NM_001127191:exon4:c.C508T:p.R170C,Snx16:NM_029068:exon4:c.C508T:p.R170C"	3qA1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.187004754	2	8.15E-08	CGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	27468886	PW2017tail	colon	sgMsh2	27468886	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.1	64	0	0	NA	exonic	Fndc3b	nonsynonymous SNV	"Fndc3b:NM_173182:exon13:c.G1543T:p.D515Y,Fndc3b:NM_001356953:exon14:c.G1543T:p.D515Y"	3qA3	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.316957211	2	0.9923965	TCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	36928597	PW2017tail	colon	sgMsh2	36928597	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	173	0	0	NA	exonic	4932438A13Rik	nonsynonymous SNV	4932438A13Rik:NM_172679:exon21:c.G2410A:p.A804T	3qB	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.18066561	2	0.7621903	TGC	nonsynonymous	CTTGC	10	CTTGCCTTGC	NA
PW2019T1	chr3	51530120	PW2017tail	colon	sgMsh2	51530120	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	118	0	0	NA	exonic	Setd7	nonsynonymous SNV	Setd7:NM_080793:exon6:c.C713T:p.P238L	3qC	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.244057052	2	0.9881423	AGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	60622184	PW2017tail	colon	sgMsh2	60622184	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	257	0	0	NA	exonic	Mbnl1	nonsynonymous SNV	"Mbnl1:NM_001253709:exon7:c.G652A:p.A218T,Mbnl1:NM_001253713:exon8:c.G757A:p.A253T,Mbnl1:NM_020007:exon8:c.G1033A:p.A345T"	3qD	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.174326466	2	0.6393932	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	75078467	PW2017tail	colon	sgMsh2	75078467	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.06	219	0	0	NA	exonic	Zbbx	nonsynonymous SNV	"Zbbx:NM_001310529:exon12:c.A1262G:p.D421G,Zbbx:NM_172515:exon12:c.A1277G:p.D426G"	3qE3	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.190174326	2	0.8976955	GTC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	82004513	PW2017tail	colon	sgMsh2	82004513	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.254	165	0	0	NA	exonic	Asic5	nonsynonymous SNV	Asic5:NM_021370:exon3:c.C415A:p.L139I	3qE3	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.805071315	1	1	CCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	86757548	PW2017tail	colon	sgMsh2	86757548	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	222	0	0	NA	exonic	Lrba	synonymous SNV	"Lrba:NM_001077688:exon53:c.C8022T:p.G2674G,Lrba:NM_030695:exon53:c.C8022T:p.G2674G"	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	3	0.7230792	GCG	synonymous	NA	NA	NA	NA
PW2019T1	chr3	87913145	PW2017tail	colon	sgMsh2	87913145	T	-	Deletion	Strelka2;Vardict	2	0.125	144	0	0	NA	exonic	Hdgf	frameshift deletion	"Hdgf:NM_001331052:exon2:c.46delT:p.F18Lfs*90,Hdgf:NM_008231:exon2:c.142delT:p.F50Lfs*90"	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW2019T1	chr3	90257297	PW2017tail	colon	sgMsh2	90257297	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	117	0	0	NA	exonic	Crtc2	synonymous SNV	Crtc2:NM_028881:exon3:c.C258T:p.S86S	3qF1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.177496038	2	0.7124466	GCC	synonymous	C	5	CCCCC	NA
PW2019T1	chr3	101050108	PW2017tail	colon	sgMsh2	101050108	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	178	0	0	NA	exonic	Ptgfrn	nonsynonymous SNV	Ptgfrn:NM_011197:exon7:c.G2149A:p.G717R	3qF2.2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.142630745	3	0.8649792	CCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	103736051	PW2017tail	colon	sgMsh2	103736051	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	176	0	0	NA	exonic	Olfml3	nonsynonymous SNV	Olfml3:NM_133859:exon3:c.G1013A:p.R338H	3qF2.2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	2	0.9927161	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	108997045	PW2017tail	colon	sgMsh2	108997045	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.03	358	0	0	NA	exonic	Fam102b	nonsynonymous SNV	Fam102b:NM_001163567:exon3:c.C278T:p.A93V	3qF3	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.095087163	3	0.9999952	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	109503498	PW2017tail	colon	sgMsh2	109503498	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	79	0	0	NA	exonic	Vav3	frameshift deletion	"Vav3:NM_001378987:exon6:c.644delA:p.K216Nfs*6,Vav3:NM_020505:exon6:c.644delA:p.K216Nfs*6"	3qF3	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.256735341	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr3	117800870	PW2017tail	colon	sgMsh2	117800870	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	160	0	0	NA	exonic	Snx7	nonsynonymous SNV	Snx7:NM_029655:exon8:c.G1231A:p.A411T	3qG1	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.18066561	2	0.7583209	GCC	nonsynonymous	TCTGC	10	TCTGCTCTGC	NA
PW2019T1	chr3	144758044	PW2017tail	colon	sgMsh2	144758044	C	T	SNV	Mutect2;Vardict	2	0.032	353	0	0	NA	exonic	Clca3a1	stopgain	Clca3a1:NM_009899:exon4:c.G471A:p.W157X	3qH2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.101426307	3	0.9999843	CCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	146945138	PW2017tail	colon	sgMsh2	146945138	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	163	0	0	NA	exonic	Ttll7	nonsynonymous SNV	"Ttll7:NM_001357217:exon17:c.C2037A:p.D679E,Ttll7:NM_001302957:exon18:c.C2112A:p.D704E"	3qH2	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.282091918	2	0.9998061	ACC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr3	154941685	PW2017tail	colon	sgMsh2	154941685	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	130	0	0	NA	exonic	Tnni3k	nonsynonymous SNV	Tnni3k:NM_177066:exon12:c.C1184T:p.A395V	3qH4	chr3-8935052-159911278	2	1	1	0.631	2	NON-ABERRANT	1	0.364500792	2	0.9999818	GGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	32712035	PW2017tail	colon	sgMsh2	32712035	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.05	107	0	0	NA	exonic	Mdn1	nonsynonymous SNV	Mdn1:NM_001081392:exon38:c.A5552G:p.Q1851R	4qA5	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	3	0.5014	CAA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	40177932	PW2017tail	colon	sgMsh2	40177932	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	75	0	0	NA	exonic	Aco1	nonsynonymous SNV	Aco1:NM_007386:exon8:c.G952A:p.A318T	4qA5	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.212361331	2	0.8878184	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	55080836	PW2017tail	colon	sgMsh2	55080836	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	196	0	0	NA	exonic	Zfp462	nonsynonymous SNV	Zfp462:NM_172867:exon13:c.A7451G:p.K2484R	4qB2	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.792393027	1	1	AAA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	55528245	PW2017tail	colon	sgMsh2	55528245	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	39	0	0	NA	exonic	Klf4	synonymous SNV	Klf4:NM_010637:exon5:c.C1332G:p.S444S	4qB3	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.748019017	1	0.994943	CGG	synonymous	NA	NA	NA	NA
PW2019T1	chr4	57648026	PW2017tail	colon	sgMsh2	57648026	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.496	118	0	0	NA	exonic	Pakap	nonsynonymous SNV	"Pakap:NM_001304544:exon3:c.G163A:p.V55I,Pakap:NM_172868:exon3:c.G163A:p.V55I,Pakap:NM_001384149:exon4:c.G169A:p.V57I,Pakap:NM_001384150:exon4:c.G163A:p.V55I,Pakap:NM_001384157:exon4:c.G169A:p.V57I"	4qB3	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.786053883	1	1.06E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	61835110	PW2017tail	colon	sgMsh2	61835110	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	459	0	0	NA	exonic	Mup5	synonymous SNV	Mup5:NM_008649:exon1:c.C13T:p.L5L	4qB3	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.079239303	3	5.56E-09	AGC	synonymous	CAG	11	CAGCAGCAGCA	NA
PW2019T1	chr4	98497017	PW2017tail	colon	sgMsh2	98497017	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	125	0	0	NA	exonic	Patj	synonymous SNV	"Patj:NM_001355177:exon17:c.C30T:p.D10D,Patj:NM_001005784:exon20:c.C2586T:p.D862D,Patj:NM_172696:exon20:c.C2586T:p.D862D"	4qC6	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.8015868	ACG	synonymous	NA	NA	NA	NA
PW2019T1	chr4	109742934	PW2017tail	colon	sgMsh2	109742934	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	224	0	0	NA	exonic	Faf1	synonymous SNV	Faf1:NM_007983:exon6:c.G525A:p.P175P	4qC7	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.148969889	3	0.8732154	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr4	114408965	PW2017tail	colon	sgMsh2	114408965	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	53	0	0	NA	exonic	Trabd2b	nonsynonymous SNV	Trabd2b:NM_001085549:exon2:c.G175A:p.V59I	4qD1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	2	0.9926732	CGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	118391252	PW2017tail	colon	sgMsh2	118391252	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	132	0	0	NA	exonic	Szt2	nonsynonymous SNV	Szt2:NM_198170:exon14:c.G1961A:p.R654H	4qD2.1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.611727417	1	0.9999788	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	118809859	PW2017tail	colon	sgMsh2	118809859	A	G	SNV	Mutect2;Vardict	2	0.023	216	0	0	NA	exonic	Olfr1335	nonsynonymous SNV	Olfr1335:NM_207703:exon1:c.T4C:p.C2R	4qD2.1	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.072900158	3	0.9998973	CAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	133066233	PW2017tail	colon	sgMsh2	133066233	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	124	0	0	NA	exonic	Ahdc1	stoploss	Ahdc1:NM_146155:exon6:c.A4784G:p.X1595W	4qD2.3	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.30110935	2	0.9995776	TAG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	148500244	PW2017tail	colon	sgMsh2	148500244	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	63	0	0	NA	exonic	Angptl7	nonsynonymous SNV	Angptl7:NM_001039554:exon1:c.A46G:p.S16G	4qE2	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.396196513	2	0.9942254	CTG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr4	149125335	PW2017tail	colon	sgMsh2	149125335	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.202	56	0	0	NA	exonic	Cort	frameshift deletion	Cort:NM_007745:exon2:c.259delC:p.Q87Nfs*42	4qE2	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.640253566	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr4	156009785	PW2017tail	colon	sgMsh2	156009785	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	150	0	0	NA	exonic	Sdf4	synonymous SNV	"Sdf4:NM_001302468:exon7:c.C921T:p.D307D,Sdf4:NM_011341:exon7:c.C921T:p.D307D,Sdf4:NM_001302467:exon8:c.C921T:p.D307D"	4qE2	chr4-3973093-156200568	2	1	1	0.631	2	NON-ABERRANT	1	0.193343899	2	0.8785036	ACC	synonymous	NA	NA	NA	NA
PW2019T1	chr5	14676906	PW2017tail	colon	sgMsh2	14676906	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	190	0	0	NA	exonic	Pclo	frameshift deletion	"Pclo:NM_001110796:exon5:c.5777delA:p.I1928fs*0,Pclo:NM_011995:exon5:c.5777delA:p.I1928fs*0"	5qA1	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.250396197	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr5	103609086	PW2017tail	colon	sgMsh2	103609086	C	T	SNV	Mutect2;Vardict	2	0.069	79	0	0	NA	exonic	Slc10a6	nonsynonymous SNV	Slc10a6:NM_029415:exon5:c.G811A:p.A271T	5qE5	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.218700475	2	0.9134153	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr5	105119907	PW2017tail	colon	sgMsh2	105119907	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.021	526	0	0	NA	exonic	Gbp4	nonsynonymous SNV	"Gbp4:NM_001359080:exon8:c.C1064T:p.A355V,Gbp4:NM_001359081:exon8:c.C1064T:p.A355V,Gbp4:NM_001256005:exon9:c.C1472T:p.A491V,Gbp4:NM_001359082:exon9:c.C1064T:p.A355V,Gbp4:NM_008620:exon9:c.C1064T:p.A355V,Gbp4:NM_001359079:exon10:c.C1511T:p.A504V"	5qE5	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.066561014	3	1.01E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr5	111224097	PW2017tail	colon	sgMsh2	111224097	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	81	0	0	NA	exonic	Ttc28	nonsynonymous SNV	Ttc28:NM_001267622:exon7:c.A2411G:p.Y804C	5qF	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.244057052	2	0.9648597	TAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr5	120483599	PW2017tail	colon	sgMsh2	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	20	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.679873217	1	0.6696022	CGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr5	129902754	PW2017tail	colon	sgMsh2	129902754	T	-	Deletion	Mutect2;Vardict	2	0.056	267	0	0	NA	exonic	Zbed5	frameshift deletion	"Zbed5:NM_183088:exon4:c.1543delT:p.F516Lfs*21,Zbed5:NM_001359408:exon5:c.1480delT:p.F495Lfs*21"	5qG1.3	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.177496038	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr5	135987283	PW2017tail	colon	sgMsh2	135987283	C	T	SNV	Mutect2;Vardict	2	0.032	182	0	0	NA	exonic	Zp3	nonsynonymous SNV	Zp3:NM_011776:exon6:c.C863T:p.A288V	5qG2	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.101426307	3	0.9949096	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr5	137868745	PW2017tail	colon	sgMsh2	137868745	G	A	SNV	Mutect2;MuSe;Vardict	3	0.08	198	0	0	NA	exonic	Pilrb2	synonymous SNV	"Pilrb2:NM_001024932:exon3:c.C495T:p.S165S,Pilrb2:NM_001384202:exon3:c.C495T:p.S165S"	5qG2	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.253565769	2	0.9995317	GGC	synonymous	NA	NA	NA	NA
PW2019T1	chr5	138275805	PW2017tail	colon	sgMsh2	138275805	-	A	Insertion	Strelka2;Vardict	2	0.1579	19	0	0	NA	exonic	Gpc2	frameshift insertion	Gpc2:NM_172412:exon8:c.1211dupT:p.W405Lfs*44	5qG2	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.500475436	NA	NA	AGA	frameshift	NA	NA	NA	1
PW2019T1	chr5	144815414	PW2017tail	colon	sgMsh2	144815414	G	-	Deletion	Mutect2;Vardict	2	0.046	116	0	0	NA	exonic	Trrap	frameshift deletion	Trrap:NM_001081362:exon36:c.5124delG:p.C1709Afs*2	5qG2	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.145800317	NA	NA	TGT	frameshift	NA	NA	NA	-1
PW2019T1	chr5	147539307	PW2017tail	colon	sgMsh2	147539307	C	T	SNV	Mutect2;Vardict	2	0.027	238	0	0	NA	exonic	Pan3	nonsynonymous SNV	"Pan3:NM_028291:exon15:c.C2092T:p.R698W,Pan3:NM_001359433:exon16:c.C1318T:p.R440W"	5qG3	chr5-3673201-150478141	2	1	1	0.631	2	NON-ABERRANT	1	0.085578447	3	0.9998578	TCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr6	15409841	PW2017tail	colon	sgMsh2	15409841	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	67	0	0	NA	exonic	Foxp2	nonsynonymous SNV	"Foxp2:NM_001286607:exon11:c.C1301T:p.P434L,Foxp2:NM_212435:exon11:c.C1364T:p.P455L,Foxp2:NM_053242:exon13:c.C1364T:p.P455L"	6qA1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.209191759	2	0.8637797	CCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr6	28244195	PW2017tail	colon	sgMsh2	28244195	T	-	Deletion	Strelka2;Vardict	2	0.0737	95	0	0	NA	exonic	Zfp800	frameshift deletion	"Zfp800:NM_001081678:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364595:exon5:c.770delA:p.K257Rfs*4,Zfp800:NM_001364596:exon6:c.770delA:p.K257Rfs*4"	6qA3.2	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.233597464	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW2019T1	chr6	42435041	PW2017tail	colon	sgMsh2	42435041	C	A	SNV	Mutect2;Vardict	2	0.031	216	0	0	NA	exonic	Tas2r126	synonymous SNV	Tas2r126:NM_207028:exon1:c.C507A:p.T169T	6qB2.1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.098256735	3	0.9988093	CCT	synonymous	NA	NA	NA	NA
PW2019T1	chr6	42912203	PW2017tail	colon	sgMsh2	42912203	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	137	0	0	NA	exonic	Olfr447	nonsynonymous SNV	Olfr447:NM_146988:exon1:c.A679G:p.I227V	6qB2.1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.145800317	3	0.7372881	GAT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr6	113468460	PW2017tail	colon	sgMsh2	113468460	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	126	0	0	NA	exonic	Il17re	synonymous SNV	"Il17re:NM_001034029:exon11:c.G528A:p.T176T,Il17re:NM_001362204:exon12:c.G1131A:p.T377T,Il17re:NM_001362205:exon12:c.G1131A:p.T377T,Il17re:NM_145826:exon12:c.G1131A:p.T377T,Il17re:NM_001034031:exon13:c.G528A:p.T176T"	6qE3	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.142630745	3	0.7421125	CGC	synonymous	NA	NA	NA	NA
PW2019T1	chr6	119751269	PW2017tail	colon	sgMsh2	119751269	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	122	0	0	NA	exonic	Erc1	synonymous SNV	Erc1:NM_053204:exon11:c.C1947A:p.T649T	6qF1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.7927462	AGG	synonymous	NA	NA	NA	NA
PW2019T1	chr6	125137191	PW2017tail	colon	sgMsh2	125137191	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	96	0	0	NA	exonic	Nop2	frameshift deletion	Nop2:NM_138747:exon7:c.619delC:p.P208Lfs*44	6qF2	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.275752773	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr6	136839806	PW2017tail	colon	sgMsh2	136839806	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	115	0	0	NA	exonic	BC049715	nonsynonymous SNV	BC049715:NM_178776:exon3:c.G43T:p.A15S	6qG1	chr6-3494310-149014300	2	1	1	0.631	2	NON-ABERRANT	1	0.215530903	2	0.9460664	AGC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	10037623	PW2017tail	colon	sgMsh2	10037623	C	T	SNV	Mutect2;Vardict	2	0.043	469	0	0	NA	exonic	Vmn2r50	nonsynonymous SNV	Vmn2r50:NM_001105178:exon6:c.G2198A:p.G733D	7qA1	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.136291601	3	0.999532	GCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	19524408	PW2017tail	colon	sgMsh2	19524408	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.094	83	0	0	NA	exonic	Nkpd1	nonsynonymous SNV	Nkpd1:NM_027116:exon4:c.A2111C:p.N704T	7qA3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.297939778	2	0.9953805	AAT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	28047412	PW2017tail	colon	sgMsh2	28047412	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	49	0	0	NA	exonic	Psmc4	synonymous SNV	Psmc4:NM_011874:exon4:c.C423T:p.D141D	7qA3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.335974643	2	0.9862074	CGT	synonymous	NA	NA	NA	NA
PW2019T1	chr7	33737361	PW2017tail	colon	sgMsh2	33737361	T	-	Deletion	Strelka2;Vardict	2	0.0537	149	0	0	NA	exonic	Scgb2b24	frameshift deletion	Scgb2b24:NM_177446:exon3:c.325delA:p.I109Yfs*6	7qB1	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.170206022	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW2019T1	chr7	35197833	PW2017tail	colon	sgMsh2	35197833	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.091	69	0	0	NA	exonic	Slc7a10	nonsynonymous SNV	Slc7a10:NM_017394:exon5:c.G688A:p.A230T	7qB2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	2	0.9868911	CGC	nonsynonymous	GCCTTC	12	GCCTTCGCCTTC	NA
PW2019T1	chr7	41427883	PW2017tail	colon	sgMsh2	41427883	T	C	SNV	Mutect2;Vardict	2	0.02	470	0	0	NA	exonic	Vmn2r57	synonymous SNV	Vmn2r57:NM_177764:exon3:c.A858G:p.R286R	7qB3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.063391442	3	1.10E-09	GTC	synonymous	NA	NA	NA	NA
PW2019T1	chr7	44630829	PW2017tail	colon	sgMsh2	44630829	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.147	36	0	0	NA	exonic	Myh14	nonsynonymous SNV	"Myh14:NM_028021:exon20:c.A2576C:p.Q859P,Myh14:NM_001271538:exon21:c.A2699C:p.Q900P,Myh14:NM_001271540:exon22:c.A2600C:p.Q867P"	7qB3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.4659271	2	0.0950564	CTG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	62379763	PW2017tail	colon	sgMsh2	62379763	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.117	92	0	0	NA	exonic	Magel2	frameshift deletion	Magel2:NM_013779:exon1:c.2414delG:p.A807Hfs*66	7qC	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.370839937	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr7	88450738	PW2017tail	colon	sgMsh2	88450738	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	181	0	0	NA	exonic	Rab38	stopgain	Rab38:NM_028238:exon2:c.G460T:p.G154X	7qD3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	2	0.9934994	AGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	91733096	PW2017tail	colon	sgMsh2	91733096	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	278	0	0	NA	exonic	Dlg2	synonymous SNV	Dlg2:NM_011807:exon3:c.C210T:p.S70S	7qE1	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.139461173	3	0.9779186	GCC	synonymous	NA	NA	NA	NA
PW2019T1	chr7	102954991	PW2017tail	colon	sgMsh2	102954991	A	-	Deletion	Mutect2;Vardict	2	0.074	173	0	0	NA	exonic	Olfr575	frameshift deletion	Olfr575:NM_147114:exon1:c.630delT:p.F210Lfs*5	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr7	103584308	PW2017tail	colon	sgMsh2	103584308	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	482	0	0	NA	exonic	Olfr617	synonymous SNV	Olfr617:NM_146841:exon1:c.T285A:p.A95A	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.228209192	2	0.9999934	CTG	synonymous	NA	NA	NA	NA
PW2019T1	chr7	103788015	PW2017tail	colon	sgMsh2	103788015	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	165	0	0	NA	exonic	Olfr67	nonsynonymous SNV	Olfr67:NM_013619:exon2:c.G261A:p.M87I	7qE3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.139461173	3	0.8689007	GCA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	119486972	PW2017tail	colon	sgMsh2	119486972	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	112	0	0	NA	exonic	Pdilt	stopgain	Pdilt:NM_027943:exon12:c.G1519T:p.E507X	7qF2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	2	0.9984487	TCA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	120932233	PW2017tail	colon	sgMsh2	120932233	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.129	70	0	0	NA	exonic	Polr3e	nonsynonymous SNV	"Polr3e:NM_001164096:exon8:c.C544A:p.L182M,Polr3e:NM_001379288:exon9:c.C634A:p.L212M,Polr3e:NM_025298:exon9:c.C622A:p.L208M"	7qF2	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.408874802	2	0.9933278	CCT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr7	127236710	PW2017tail	colon	sgMsh2	127236710	-	ACC	Insertion	Strelka2;Vardict	2	0.0841	107	0	0	NA	exonic	Zfp553	nonframeshift insertion	"Zfp553:NM_001360912:exon2:c.1436_1437insACC:p.P484_S485insP,Zfp553:NM_146201:exon2:c.1436_1437insACC:p.P484_S485insP"	7qF3	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.266561014	NA	NA	AGA	inframe	ACC	16	ACCACCACCACCACCA	3
PW2019T1	chr7	139845658	PW2017tail	colon	sgMsh2	139845658	C	T	SNV	Mutect2;Vardict	2	0.116	35	0	0	NA	exonic	Adgra1	nonsynonymous SNV	Adgra1:NM_177469:exon4:c.C86T:p.A29V	7qF4	chr7-4554068-143880979	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	2	0.009715515	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr8	4213327	PW2017tail	colon	sgMsh2	4213327	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.13	67	0	0	NA	exonic	Prr36	frameshift deletion	Prr36:NM_207203:exon6:c.2338delC:p.L780Yfs*17	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.412044374	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr8	13954042	PW2017tail	colon	sgMsh2	13954042	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	54	0	0	NA	exonic	Tdrp	frameshift deletion	"Tdrp:NM_173744:exon3:c.294delA:p.K98Nfs*76,Tdrp:NM_001361625:exon4:c.318delA:p.K106Nfs*76,Tdrp:NM_001361628:exon4:c.294delA:p.K98Nfs*76,Tdrp:NM_001361629:exon4:c.294delA:p.K98Nfs*76,Tdrp:NM_001361630:exon4:c.294delA:p.K98Nfs*76"	8qA1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.367670365	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr8	46610542	PW2017tail	colon	sgMsh2	46610542	G	T	SNV	Mutect2;Vardict	2	0.05	113	0	0	NA	exonic	Primpol	synonymous SNV	Primpol:NM_001001184:exon3:c.C78A:p.S26S	8qB1.1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.158478605	3	0.5138424	CGG	synonymous	NA	NA	NA	NA
PW2019T1	chr8	72725600	PW2017tail	colon	sgMsh2	72725600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	113	0	0	NA	exonic	Sin3b	synonymous SNV	"Sin3b:NM_001113248:exon3:c.C270T:p.I90I,Sin3b:NM_009188:exon3:c.C270T:p.I90I"	8qB3.3	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.776545166	1	1.39E-09	TCG	synonymous	NA	NA	NA	NA
PW2019T1	chr8	95264484	PW2017tail	colon	sgMsh2	95264484	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	69	0	0	NA	exonic	Cngb1	nonsynonymous SNV	Cngb1:NM_001195413:exon20:c.G2089A:p.A697T	8qC5	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.297939778	2	0.990176	GCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr8	95741815	PW2017tail	colon	sgMsh2	95741815	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	215	0	0	NA	exonic	Cnot1	nonsynonymous SNV	"Cnot1:NM_001205226:exon31:c.C4379T:p.T1460I,Cnot1:NM_001372351:exon31:c.C4382T:p.T1461I,Cnot1:NM_001372353:exon31:c.C4400T:p.T1467I,Cnot1:NM_153164:exon31:c.C4385T:p.T1462I,Cnot1:NM_178078:exon31:c.C4385T:p.T1462I"	8qD1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.152139461	3	0.8193148	GGT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr8	95760219	PW2017tail	colon	sgMsh2	95760219	A	-	Deletion	Strelka2;Vardict	2	0.0706	85	0	0	NA	exonic	Cnot1	stopgain	"Cnot1:NM_001205226:exon16:c.1853delT:p.L618fs*0,Cnot1:NM_001372351:exon16:c.1859delT:p.L620fs*0,Cnot1:NM_001372353:exon16:c.1859delT:p.L620fs*0,Cnot1:NM_153164:exon16:c.1859delT:p.L620fs*0,Cnot1:NM_178078:exon16:c.1859delT:p.L620fs*0"	8qD1	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.223771791	NA	NA	TAA	nonsynonymous	A	5	AAAAA	-1
PW2019T1	chr8	105375658	PW2017tail	colon	sgMsh2	105375658	C	-	Deletion	Mutect2;Vardict	2	0.088	57	0	0	NA	exonic	Plekhg4	frameshift deletion	"Plekhg4:NM_001081333:exon1:c.278delC:p.P95Qfs*24,Plekhg4:NM_001364406:exon3:c.386delC:p.P131Qfs*24"	8qD3	chr8-3194938-127409529	2	1	1	0.631	2	NON-ABERRANT	1	0.278922345	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr9	3458845	PW2017tail	colon	sgMsh2	3458845	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	178	0	0	NA	exonic	Cwf19l2	nonsynonymous SNV	Cwf19l2:NM_027545:exon15:c.C2293T:p.P765S	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.263074485	2	0.9995644	CCC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	4331329	PW2017tail	colon	sgMsh2	4331329	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.226	128	0	0	NA	exonic	Kbtbd3	nonsynonymous SNV	"Kbtbd3:NM_001164574:exon3:c.T1702G:p.Y568D,Kbtbd3:NM_026962:exon4:c.T1702G:p.Y568D"	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.716323296	1	4.26E-09	CTA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	7503224	PW2017tail	colon	sgMsh2	7503224	A	-	Deletion	Mutect2;Vardict	2	0.052	113	0	0	NA	exonic	Mmp10	frameshift deletion	Mmp10:NM_019471:exon2:c.184delA:p.I64Ffs*11	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.16481775	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2019T1	chr9	7819430	PW2017tail	colon	sgMsh2	7819430	T	-	Deletion	Mutect2;Vardict	2	0.041	261	0	0	NA	exonic	Birc2	frameshift deletion	"Birc2:NM_001291503:exon6:c.1480delA:p.T494Hfs*14,Birc2:NM_007465:exon6:c.1480delA:p.T494Hfs*14"	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.129952456	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW2019T1	chr9	8092300	PW2017tail	colon	sgMsh2	8092300	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.1	208	0	0	NA	exonic	Cep126	nonsynonymous SNV	"Cep126:NM_001368148:exon7:c.T2348C:p.V783A,Cep126:NM_001045524:exon8:c.T2930C:p.V977A"	9qA1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.316957211	2	0.9999991	GAC	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	15959852	PW2017tail	colon	sgMsh2	15959852	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	129	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon19:c.T11254C:p.C3752R	9qA2	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.183835182	2	0.7817465	CAG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	16376848	PW2017tail	colon	sgMsh2	16376848	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	222	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon2:c.G1390A:p.A464T	9qA2	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.215530903	2	0.9910668	GCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	27334216	PW2017tail	colon	sgMsh2	27334216	G	-	Deletion	Strelka2;Vardict	2	0.1087	46	0	0	NA	exonic	Igsf9b	frameshift deletion	Igsf9b:NM_001326702:exon18:c.3478delG:p.H1162Mfs*45	9qA4	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.344532488	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2019T1	chr9	38995192	PW2017tail	colon	sgMsh2	38995192	-	T	Insertion	Mutect2;Vardict	2	0.063	391	0	0	NA	exonic	Olfr935	frameshift insertion	Olfr935:NM_146746:exon1:c.241dupA:p.M81Nfs*10	9qA5.1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.199683043	NA	NA	CAT	frameshift	T	5	TTTTT	1
PW2019T1	chr9	39462155	PW2017tail	colon	sgMsh2	39462155	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.063	432	0	0	NA	exonic	Olfr954	synonymous SNV	Olfr954:NM_146331:exon1:c.T723C:p.F241F	9qA5.1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.199683043	2	0.9948559	TTA	synonymous	NA	NA	NA	NA
PW2019T1	chr9	39950356	PW2017tail	colon	sgMsh2	39950356	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	143	0	0	NA	exonic	Olfr975	synonymous SNV	Olfr975:NM_146828:exon1:c.G414A:p.V138V	9qA5.1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.139461173	3	0.8207557	ACA	synonymous	NA	NA	NA	NA
PW2019T1	chr9	50710906	PW2017tail	colon	sgMsh2	50710906	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.089	105	0	0	NA	exonic	Dixdc1	frameshift deletion	"Dixdc1:NM_001311069:exon2:c.124delG:p.V42Cfs*11,Dixdc1:NM_001374656:exon2:c.127delG:p.V43Cfs*11,Dixdc1:NM_178118:exon2:c.127delG:p.V43Cfs*11"	9qA5.3	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.282091918	NA	NA	ACA	frameshift	NA	NA	NA	-1
PW2019T1	chr9	58117462	PW2017tail	colon	sgMsh2	58117462	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.135	107	0	0	NA	exonic	Ccdc33	synonymous SNV	Ccdc33:NM_001166282:exon2:c.G480T:p.L160L	9qB	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.427892235	2	0.9943258	ACA	synonymous	NA	NA	NA	NA
PW2019T1	chr9	59345801	PW2017tail	colon	sgMsh2	59345801	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.091	93	0	0	NA	exonic	Bbs4	frameshift deletion	"Bbs4:NM_001359558:exon2:c.75delA:p.A26Lfs*12,Bbs4:NM_175325:exon2:c.75delA:p.A26Lfs*12"	9qB	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.288431062	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2019T1	chr9	80136750	PW2017tail	colon	sgMsh2	80136750	A	-	Deletion	Strelka2;Vardict	2	0.1486	148	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.470998415	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
PW2019T1	chr9	92606817	PW2017tail	colon	sgMsh2	92606817	G	A	SNV	Mutect2;Vardict	2	0.028	203	0	0	NA	exonic	Plod2	synonymous SNV	"Plod2:NM_011961:exon18:c.G1986A:p.S662S,Plod2:NM_001142916:exon19:c.G2049A:p.S683S"	9qE3.3	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.088748019	3	0.999206	CGC	synonymous	CGCT	9	CGCTCGCTC	NA
PW2019T1	chr9	101971264	PW2017tail	colon	sgMsh2	101971264	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	89	0	0	NA	exonic	Ephb1	nonsynonymous SNV	"Ephb1:NM_001168296:exon10:c.C1834A:p.L612M,Ephb1:NM_173447:exon11:c.C1957A:p.L653M"	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.234548336	2	0.9598408	AGG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	105945844	PW2017tail	colon	sgMsh2	105945844	C	T	SNV	Mutect2;Vardict	2	0.037	148	0	0	NA	exonic	Col6a5	nonsynonymous SNV	Col6a5:NM_001167923:exon3:c.G313A:p.G105S	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.117274168	3	0.9558585	CCG	nonsynonymous	NA	NA	NA	NA
PW2019T1	chr9	106889145	PW2017tail	colon	sgMsh2	106889145	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.069	118	0	0	NA	exonic	Manf	frameshift deletion	Manf:NM_029103:exon4:c.436delG:p.E146Rfs*15	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.218700475	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr9	107915108	PW2017tail	colon	sgMsh2	107915108	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.088	99	0	0	NA	exonic	Mst1r	frameshift deletion	"Mst1r:NM_001287261:exon1:c.57delC:p.L21Cfs*17,Mst1r:NM_009074:exon11:c.2760delC:p.L922Cfs*17"	9qF1	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.278922345	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2019T1	chr9	119770029	PW2017tail	colon	sgMsh2	119770029	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	109	0	0	NA	exonic	Scn11a	nonsynonymous SNV	Scn11a:NM_011887:exon22:c.T3434A:p.V1145D	9qF3	chr9-3342997-123664738	2	1	1	0.631	2	NON-ABERRANT	1	0.370839937	2	0.9998915	AAC	nonsynonymous	ACA	8	ACAACAAC	NA
PW2019T1	chrX	42816914	PW2017tail	colon	sgMsh2	42816914	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	60	0	0	NA	exonic	Tenm1	nonsynonymous SNV	Tenm1:NM_011855:exon11:c.G1736A:p.C579Y	XqA4	NA	NA	NA	NA	0.631	2	NON-ABERRANT	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
PW2019T1	chrX	72264729	PW2017tail	colon	sgMsh2	72264729	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	98	0	0	NA	exonic	Gabre	nonsynonymous SNV	Gabre:NM_017369:exon4:c.T1586C:p.I529T	XqA7.3	NA	NA	NA	NA	0.631	2	NON-ABERRANT	NA	NA	NA	NA	AAT	nonsynonymous	NA	NA	NA	NA
PW2019T1	chrX	124132898	PW2017tail	colon	sgMsh2	124132898	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	179	0	0	NA	exonic	Vmn2r121	nonsynonymous SNV	Vmn2r121:NM_001100616:exon3:c.G561T:p.K187N	XqE3	NA	NA	NA	NA	0.631	2	NON-ABERRANT	NA	NA	NA	NA	CCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	21384246	PW2017tail	colon	sgMsh2	21384246	T	C	SNV	Mutect2;Vardict	2	0.035	247	0	0	NA	exonic	Khdc1b	nonsynonymous SNV	Khdc1b:NM_001113187:exon2:c.T172C:p.S58P	1qA4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.117252931	3	1	CTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	34188616	PW2017tail	colon	sgMsh2	34188616	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	126	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_134448:exon36:c.A5289G:p.G1763G,Dst:NM_001276764:exon39:c.A5823G:p.G1941G"	1qB	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.881072027	1	0.8156281	GAC	synonymous	NA	NA	NA	NA
PW2020T2	chr1	46793593	PW2017tail	colon	sgMsh2	46793593	G	T	SNV	Mutect2;Vardict	2	0.045	257	0	0	NA	exonic	Dnah7c	nonsynonymous SNV	Dnah7c:NM_001310335:exon63:c.G11764T:p.G3922C	1qC1.1	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.150753769	3	1	TGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	65262918	PW2017tail	colon	sgMsh2	65262918	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	233	0	0	NA	exonic	Pikfyve	nonsynonymous SNV	"Pikfyve:NM_001310624:exon32:c.G4967A:p.R1656Q,Pikfyve:NM_011086:exon32:c.G4832A:p.R1611Q"	1qC2	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.837520938	1	0.5775509	CGG	nonsynonymous	ATGAAC	12	ATGAACATGAAC	NA
PW2020T2	chr1	71626234	PW2017tail	colon	sgMsh2	71626234	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.066	92	0	0	NA	exonic	Fn1	frameshift deletion	"Fn1:NM_001276408:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_001276409:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_001276410:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_001276411:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_001276412:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_001276413:exon19:c.2723delC:p.P908Lfs*9,Fn1:NM_010233:exon19:c.2723delC:p.P908Lfs*9"	1qC3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.221105528	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr1	125572486	PW2017tail	colon	sgMsh2	125572486	T	-	Deletion	Strelka2;Vardict	2	0.2981	161	0	0	NA	exonic	Slc35f5	frameshift deletion	"Slc35f5:NM_001356294:exon7:c.802delT:p.C271Afs*21,Slc35f5:NM_028787:exon7:c.736delT:p.C249Afs*21"	1qE2.3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998659966	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW2020T2	chr1	128252304	PW2017tail	colon	sgMsh2	128252304	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	225	0	0	NA	exonic	Ubxn4	nonsynonymous SNV	"Ubxn4:NM_001356529:exon2:c.A184C:p.S62R,Ubxn4:NM_026390:exon2:c.A184C:p.S62R"	1qE3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.877721943	1	0.9120656	AAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	130459644	PW2017tail	colon	sgMsh2	130459644	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	301	0	0	NA	exonic	Cd55	nonsynonymous SNV	Cd55:NM_010016:exon3:c.T416A:p.L139H	1qE4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.944723618	1	0.9994967	GAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	133386867	PW2017tail	colon	sgMsh2	133386867	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.13	48	0	0	NA	exonic	Sox13	nonsynonymous SNV	Sox13:NM_011439:exon9:c.C899T:p.S300F	1qE4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.435510888	2	0.009154739	GGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	134746754	PW2017tail	colon	sgMsh2	134746754	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	99	0	0	NA	exonic	Syt2	nonsynonymous SNV	"Syt2:NM_001355726:exon8:c.A929G:p.D310G,Syt2:NM_009307:exon9:c.A929G:p.D310G"	1qE4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.998324958	1	0.9784275	GAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	135394238	PW2017tail	colon	sgMsh2	135394238	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	120	0	0	NA	exonic	Ipo9	nonsynonymous SNV	"Ipo9:NM_153774:exon15:c.G1753A:p.E585K,Ipo9:NM_001357575:exon16:c.G1645A:p.E549K,Ipo9:NM_001357576:exon16:c.G1300A:p.E434K,Ipo9:NM_001357578:exon16:c.G907A:p.E303K,Ipo9:NM_001357577:exon17:c.G1300A:p.E434K"	1qE4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.123953099	3	1.00E-09	TCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	139337180	PW2017tail	colon	sgMsh2	139337180	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	98	0	0	NA	exonic	Crb1	nonsynonymous SNV	Crb1:NM_133239:exon2:c.A499G:p.N167D	1qE4	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.355108878	3	0.9970919	TTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	163261992	PW2017tail	colon	sgMsh2	163261992	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.219	74	0	0	NA	exonic	Prrx1	nonsynonymous SNV	"Prrx1:NM_001025570:exon2:c.A265G:p.K89E,Prrx1:NM_011127:exon2:c.A265G:p.K89E,Prrx1:NM_175686:exon2:c.A265G:p.K89E"	1qH2.1	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.733668342	2	0.8173268	TTC	nonsynonymous	TCT	12	TCTTCTTCTTCT	NA
PW2020T2	chr1	171338930	PW2017tail	colon	sgMsh2	171338930	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.277	70	0	0	NA	exonic	Dedd	nonsynonymous SNV	"Dedd:NM_001357550:exon3:c.G433T:p.V145L,Dedd:NM_001357551:exon3:c.G433T:p.V145L,Dedd:NM_001357553:exon3:c.G433T:p.V145L,Dedd:NM_011615:exon3:c.G433T:p.V145L,Dedd:NM_001128609:exon4:c.G433T:p.V145L,Dedd:NM_001357552:exon4:c.G433T:p.V145L"	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.927973199	1	0.8383966	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	171384739	PW2017tail	colon	sgMsh2	171384739	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.34	51	0	0	NA	exonic	Nectin4	frameshift deletion	"Nectin4:NM_001122680:exon5:c.904delC:p.P303Hfs*1,Nectin4:NM_027893:exon5:c.904delC:p.P303Hfs*1"	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	1	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2020T2	chr1	173638980	PW2017tail	colon	sgMsh2	173638980	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.259	56	0	0	NA	exonic	Ifi209	nonsynonymous SNV	Ifi209:NM_175026:exon3:c.G377A:p.G126E	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.867671692	1	0.6448251	GGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr1	173936593	PW2017tail	colon	sgMsh2	173936593	T	-	Deletion	Strelka2;Vardict	2	0.1584	202	0	0	NA	exonic	Ifi203	frameshift deletion	"Ifi203:NM_001302649:exon4:c.312delA:p.Q106Kfs*55,Ifi203:NM_001302650:exon4:c.312delA:p.Q106Kfs*55,Ifi203:NM_001302651:exon4:c.312delA:p.Q106Kfs*55"	1qH3	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.530653266	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW2020T2	chr1	191163797	PW2017tail	colon	sgMsh2	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2622	164	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-4783928-193352278	2	2	0	0.597	2	NON-ABERRANT	1	0.87839196	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW2020T2	chr10	4035297	PW2017tail	colon	sgMsh2	4035297	G	A	SNV	Mutect2;Vardict	2	0.032	181	0	0	NA	exonic	Mthfd1l	nonsynonymous SNV	"Mthfd1l:NM_001170785:exon16:c.G1702A:p.A568T,Mthfd1l:NM_001170786:exon16:c.G1702A:p.A568T,Mthfd1l:NM_172308:exon16:c.G1702A:p.A568T"	10qA1	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	7120429	PW2017tail	colon	sgMsh2	7120429	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	78	0	0	NA	exonic	Cnksr3	synonymous SNV	Cnksr3:NM_172546:exon13:c.C1527T:p.S509S	10qA1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9558247	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr10	11457181	PW2017tail	colon	sgMsh2	11457181	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	73	0	0	NA	exonic	Epm2a	nonsynonymous SNV	Epm2a:NM_010146:exon4:c.G757A:p.A253T	10qA1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9473163	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	29218267	PW2017tail	colon	sgMsh2	29218267	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	231	0	0	NA	exonic	9330159F19Rik	nonsynonymous SNV	9330159F19Rik:NM_001162537:exon2:c.T148C:p.W50R	10qA4	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.32160804	3	2.81E-09	GTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	50649835	PW2017tail	colon	sgMsh2	50649835	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.061	105	0	0	NA	exonic	Ascc3	nonsynonymous SNV	Ascc3:NM_198007:exon10:c.A1642G:p.T548A	10qB3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.204355109	3	9.58E-09	GAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	53622789	PW2017tail	colon	sgMsh2	53622789	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	78	0	0	NA	exonic	Mcm9	synonymous SNV	Mcm9:NM_027830:exon3:c.T588C:p.C196C	10qB3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9558247	GAC	synonymous	NA	NA	NA	NA
PW2020T2	chr10	76499639	PW2017tail	colon	sgMsh2	76499639	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	32	0	0	NA	exonic	Mcm3ap	synonymous SNV	Mcm3ap:NM_019434:exon18:c.C3894T:p.G1298G	10qC1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.701842546	2	0.000692321	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr10	79544585	PW2017tail	colon	sgMsh2	79544585	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	121	0	0	NA	exonic	Mier2	nonsynonymous SNV	"Mier2:NM_001316699:exon10:c.T916C:p.C306R,Mier2:NM_027422:exon10:c.T910C:p.C304R"	10qC1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.830820771	1	0.5175765	CAC	nonsynonymous	CTC	9	CTCCTCCTC	NA
PW2020T2	chr10	93237851	PW2017tail	colon	sgMsh2	93237851	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.229	94	0	0	NA	exonic	Cdk17	nonsynonymous SNV	Cdk17:NM_146239:exon15:c.A1423C:p.S475R	10qC2	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.767169179	2	0.7767596	CAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	107686635	PW2017tail	colon	sgMsh2	107686635	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	138	0	0	NA	exonic	Ptprq	nonsynonymous SNV	"Ptprq:NM_001081432:exon11:c.A1556C:p.Q519P,Ptprq:NM_001370987:exon11:c.A1559C:p.Q520P"	10qD1	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.13400335	3	1.00E-09	CTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	120035440	PW2017tail	colon	sgMsh2	120035440	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	90	0	0	NA	exonic	Grip1	nonsynonymous SNV	"Grip1:NM_001277295:exon7:c.G826A:p.E276K,Grip1:NM_130891:exon15:c.G1834A:p.E612K,Grip1:NM_133442:exon15:c.G1837A:p.E613K,Grip1:NM_001277292:exon16:c.G1918A:p.E640K,Grip1:NM_001277294:exon16:c.G1915A:p.E639K,Grip1:NM_001358809:exon16:c.G1918A:p.E640K,Grip1:NM_001358811:exon16:c.G2161A:p.E721K,Grip1:NM_001277293:exon17:c.G2074A:p.E692K,Grip1:NM_001358810:exon17:c.G2242A:p.E748K,Grip1:NM_028736:exon17:c.G2071A:p.E691K"	10qD2	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.324958124	3	0.9994177	AGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	120933424	PW2017tail	colon	sgMsh2	120933424	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	86	0	0	NA	exonic	Lemd3	nonsynonymous SNV	Lemd3:NM_001081193:exon6:c.T1913G:p.V638G	10qD2	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.221105528	3	0.9999992	CAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr10	127284700	PW2017tail	colon	sgMsh2	127284700	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	29	0	0	NA	exonic	Mbd6	frameshift deletion	"Mbd6:NM_001347171:exon7:c.2083delC:p.Q695Sfs*4,Mbd6:NM_001379570:exon7:c.2083delC:p.Q695Sfs*4,Mbd6:NM_001379571:exon7:c.2083delC:p.Q695Sfs*4,Mbd6:NM_033072:exon7:c.2083delC:p.Q695Sfs*4"	10qD3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	0.77721943	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr10	127696321	PW2017tail	colon	sgMsh2	127696321	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	120	0	0	NA	exonic	Nemp1	nonsynonymous SNV	Nemp1:NM_001113211:exon9:c.G1242T:p.Q414H	10qD3	chr10-4413507-130453386	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9903309	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	3341532	PW2017tail	colon	sgMsh2	3341532	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	145	0	0	NA	exonic	Pik3ip1	synonymous SNV	Pik3ip1:NM_178149:exon6:c.C600T:p.D200D	11qA1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.227805695	3	1.09E-09	ACT	synonymous	NA	NA	NA	NA
PW2020T2	chr11	4167705	PW2017tail	colon	sgMsh2	4167705	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.256	84	0	0	NA	exonic	Sf3a1	frameshift deletion	Sf3a1:NM_026175:exon4:c.466delC:p.S158Pfs*8	11qA1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.857621441	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2020T2	chr11	9378335	PW2017tail	colon	sgMsh2	9378335	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.363	204	0	0	NA	exonic	Abca13	frameshift deletion	Abca13:NM_178259:exon31:c.10407delA:p.N3471Ifs*27	11qA1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.608040201	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr11	59029545	PW2017tail	colon	sgMsh2	59029545	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.322	99	0	0	NA	exonic	Obscn	synonymous SNV	"Obscn:NM_001171512:exon73:c.G18144A:p.Q6048Q,Obscn:NM_199152:exon80:c.G20103A:p.Q6701Q"	11qB1.3	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9791995	GCT	synonymous	NA	NA	NA	NA
PW2020T2	chr11	59830205	PW2017tail	colon	sgMsh2	59830205	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.32	302	0	0	NA	exonic	Cops3	nonsynonymous SNV	Cops3:NM_011991:exon5:c.T383C:p.I128T	11qB1.3	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9999884	TAT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	60202894	PW2017tail	colon	sgMsh2	60202894	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	64	0	0	NA	exonic	Srebf1	nonsynonymous SNV	"Srebf1:NM_001313979:exon12:c.G2203T:p.A735S,Srebf1:NM_001358314:exon12:c.G2146T:p.A716S,Srebf1:NM_001358315:exon12:c.G2125T:p.A709S,Srebf1:NM_011480:exon12:c.G2218T:p.A740S"	11qB2	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.284757119	3	0.9992679	GCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	61449749	PW2017tail	colon	sgMsh2	61449750	CT	-	Deletion	Strelka2;Vardict	2	0.3091	55	0	0	NA	exonic	Rnf112	frameshift deletion	"Rnf112:NM_001291024:exon14:c.1553_1554del:p.E518Afs*59,Rnf112:NM_001359130:exon14:c.1697_1698del:p.E566Afs*59,Rnf112:NM_009548:exon15:c.1622_1623del:p.E541Afs*59"	11qB2	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	GCT	frameshift	CT	9	CTCTCTCTC	-2
PW2020T2	chr11	65008078	PW2017tail	colon	sgMsh2	65008078	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.297	60	0	0	NA	exonic	Arhgap44	frameshift deletion	"Arhgap44:NM_001099288:exon19:c.2272delG:p.E758Kfs*16,Arhgap44:NM_175003:exon19:c.2272delG:p.E758Kfs*68"	11qB3	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.994974874	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2020T2	chr11	69913152	PW2017tail	colon	sgMsh2	69913152	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	72	0	0	NA	exonic	Neurl4	nonsynonymous SNV	"Neurl4:NM_001291119:exon28:c.A4441G:p.T1481A,Neurl4:NM_001013414:exon29:c.A4513G:p.T1505A,Neurl4:NM_001291118:exon29:c.A4507G:p.T1503A"	11qB3	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.318257956	3	0.9981302	GAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	79446864	PW2017tail	colon	sgMsh2	79446864	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	73	0	0	NA	exonic	Nf1	stopgain	Nf1:NM_010897:exon25:c.C3262T:p.Q1088X	11qB5	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.539363484	2	0.9885779	GCA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	79475817	PW2017tail	colon	sgMsh2	79475817	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	202	0	0	NA	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon36:c.T4775C:p.L1592S	11qB5	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.150753769	3	1	TTA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	79692753	PW2017tail	colon	sgMsh2	79692753	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	104	0	0	NA	exonic	Rab11fip4	nonsynonymous SNV	Rab11fip4:NM_175543:exon15:c.A1822G:p.I608V	11qB5	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9826531	GAT	nonsynonymous	AGG	14	AGGAGCAGGAGGAG	NA
PW2020T2	chr11	86490457	PW2017tail	colon	sgMsh2	86490457	T	G	SNV	Mutect2;Vardict	2	0.037	145	0	0	NA	exonic	Rnft1	synonymous SNV	Rnft1:NM_029788:exon5:c.T672G:p.G224G	11qC	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.123953099	3	1.00E-09	GTT	synonymous	NA	NA	NA	NA
PW2020T2	chr11	101080144	PW2017tail	colon	sgMsh2	101080144	G	A	SNV	Mutect2;Vardict	2	0.18	23	0	0	NA	exonic	Hsd17b1	nonsynonymous SNV	Hsd17b1:NM_010475:exon6:c.G925A:p.A309T	11qD	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.603015075	2	0.7132811	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	102605436	PW2017tail	colon	sgMsh2	102605436	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.325	80	0	0	NA	exonic	Fzd2	synonymous SNV	Fzd2:NM_020510:exon1:c.C705A:p.P235P	11qE1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9588473	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr11	102680673	PW2017tail	colon	sgMsh2	102680673	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	101	0	0	NA	exonic	Meioc	nonsynonymous SNV	Meioc:NM_001127576:exon8:c.G2832T:p.E944D	11qE1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	1	0.8435483	AGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	105971378	PW2017tail	colon	sgMsh2	105971378	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	98	0	0	NA	exonic	Ace	stopgain	"Ace:NM_001281819:exon5:c.G757T:p.E253X,Ace:NM_207624:exon5:c.G757T:p.E253X"	11qE1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.609715243	2	0.9916075	AGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	106267367	PW2017tail	colon	sgMsh2	106267367	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	123	0	0	NA	exonic	Smarcd2	nonsynonymous SNV	"Smarcd2:NM_031878:exon1:c.A227G:p.Q76R,Smarcd2:NM_001130187:exon2:c.A368G:p.Q123R"	11qE1	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.716917923	2	0.9559312	CTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	119916068	PW2017tail	colon	sgMsh2	119916068	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	197	0	0	NA	exonic	Chmp6	nonsynonymous SNV	Chmp6:NM_001085498:exon4:c.A305G:p.E102G	11qE2	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9994357	GAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr11	120536813	PW2017tail	colon	sgMsh2	120536813	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	88	0	0	NA	exonic	Gcgr	synonymous SNV	Gcgr:NM_008101:exon7:c.G660A:p.G220G	11qE2	chr11-3133205-121426601	2	1	1	0.597	2	NON-ABERRANT	1	0.231155779	3	0.9999989	GGG	synonymous	NA	NA	NA	NA
PW2020T2	chr12	16672410	PW2017tail	colon	sgMsh2	16672410	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.29	49	0	0	NA	exonic	Greb1	synonymous SNV	"Greb1:NM_001252071:exon33:c.G5751A:p.P1917P,Greb1:NM_015764:exon35:c.G5835A:p.P1945P"	12qA1.1	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.971524288	1	0.8439178	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr12	33342078	PW2017tail	colon	sgMsh2	33342078	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	exonic	Atxn7l1	nonsynonymous SNV	"Atxn7l1:NM_001033436:exon3:c.T364C:p.S122P,Atxn7l1:NM_001374024:exon3:c.T364C:p.S122P,Atxn7l1:NM_001374025:exon3:c.T409C:p.S137P,Atxn7l1:NM_001374026:exon3:c.T364C:p.S122P,Atxn7l1:NM_001374022:exon5:c.T736C:p.S246P,Atxn7l1:NM_001374023:exon5:c.T736C:p.S246P"	12qA3	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.278056951	3	3.92E-08	GTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr12	51952503	PW2017tail	colon	sgMsh2	51952503	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	64	0	0	NA	exonic	Heatr5a	nonsynonymous SNV	Heatr5a:NM_177171:exon7:c.G914A:p.R305Q	12qC1	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.445561139	2	0.6832015	TCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr12	65152761	PW2017tail	colon	sgMsh2	65152761	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	147	0	0	NA	exonic	Mis18bp1	frameshift deletion	Mis18bp1:NM_172578:exon7:c.1365delA:p.D456Mfs*23	12qC1	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW2020T2	chr12	76099454	PW2017tail	colon	sgMsh2	76099454	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	exonic	Syne2	frameshift deletion	Syne2:NM_001005510:exon106:c.19242delG:p.G6416Dfs*65	12qC3	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.415410385	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr12	87456877	PW2017tail	colon	sgMsh2	87456877	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	176	0	0	NA	exonic	Snw1	nonsynonymous SNV	Snw1:NM_025507:exon9:c.A866G:p.E289G	12qD2	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.127303183	3	1	TTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr12	87464636	PW2017tail	colon	sgMsh2	87464636	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.312	96	0	0	NA	exonic	Snw1	frameshift deletion	Snw1:NM_025507:exon3:c.244delA:p.M82Cfs*43	12qD2	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2020T2	chr12	91366406	PW2017tail	colon	sgMsh2	91366406	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	284	0	0	NA	exonic	Cep128	synonymous SNV	Cep128:NM_181815:exon4:c.A84T:p.G28G	12qD3	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.45561139	2	0.9915229	CTC	synonymous	NA	NA	NA	NA
PW2020T2	chr12	104238251	PW2017tail	colon	sgMsh2	104238251	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	409	0	0	NA	exonic	Serpina3g	nonsynonymous SNV	Serpina3g:NM_009251:exon4:c.G514A:p.V172M	12qE	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.254606365	3	1	TGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr12	117880002	PW2017tail	colon	sgMsh2	117880002	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.079	145	0	0	NA	exonic	Dnah11	frameshift insertion	Dnah11:NM_010060:exon81:c.13106dupA:p.N4369Kfs*15	12qF2	chr12-3235624-120011486	2	1	1	0.597	2	NON-ABERRANT	1	0.264656616	NA	NA	CGT	frameshift	T	5	TTTTT	1
PW2020T2	chr13	4575280	PW2017tail	colon	sgMsh2	4575280	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.256	147	0	0	NA	exonic	Akr1c21	nonsynonymous SNV	Akr1c21:NM_029901:exon2:c.C209T:p.A70V	13qA1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.857621441	1	0.71702	GCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr13	20286754	PW2017tail	colon	sgMsh2	20286754	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	176	0	0	NA	exonic	Elmo1	nonsynonymous SNV	Elmo1:NM_080288:exon11:c.G815A:p.R272H	13qA2	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.874371859	1	0.8504442	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr13	21133442	PW2017tail	colon	sgMsh2	21133442	C	T	SNV	Mutect2;MuSe;Vardict	3	0.12	417	0	0	NA	exonic	Olfr263	synonymous SNV	Olfr263:NM_010984:exon1:c.C666T:p.A222A	13qA2	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.40201005	3	0.9999725	CCA	synonymous	NA	NA	NA	NA
PW2020T2	chr13	22043562	PW2017tail	colon	sgMsh2	22043562	G	C	SNV	Mutect2;Vardict	2	0.106	215	0	0	NA	exonic	H2bc11	synonymous SNV	H2bc11:NM_178198:exon1:c.G333C:p.A111A	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.355108878	3	0.999998	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr13	22772788	PW2017tail	colon	sgMsh2	22772788	T	C	SNV	Mutect2;MuSe;Vardict	3	0.116	201	0	0	NA	exonic	Vmn1r208	nonsynonymous SNV	Vmn1r208:NM_134218:exon1:c.A538G:p.I180V	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.388609715	3	0.9991051	ATC	nonsynonymous	A	5	AAAAA	NA
PW2020T2	chr13	23562330	PW2017tail	colon	sgMsh2	23562330	G	A	SNV	Mutect2;Vardict	2	0.029	195	0	0	NA	exonic	H3c6	synonymous SNV	H3c6:NM_178205:exon1:c.C36T:p.T12T	13qA3.1	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.097152429	3	1	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr13	40918452	PW2017tail	colon	sgMsh2	40918452	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	134	0	0	NA	exonic	Gcnt2	synonymous SNV	Gcnt2:NM_133219:exon1:c.G570A:p.G190G	13qA3.3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.237855946	3	2.54E-09	GGC	synonymous	NA	NA	NA	NA
PW2020T2	chr13	49722701	PW2017tail	colon	sgMsh2	49722701	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	278	0	0	NA	exonic	Iars	nonsynonymous SNV	Iars:NM_172015:exon24:c.G2461A:p.A821T	13qA5	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.110552764	3	1	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr13	59726075	PW2017tail	colon	sgMsh2	59726075	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.31	121	0	0	NA	exonic	Spata31d1d	frameshift deletion	Spata31d1d:NM_177711:exon4:c.3645delC:p.F1216Lfs*2	13qB2	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr13	64144186	PW2017tail	colon	sgMsh2	64144186	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	115	0	0	NA	exonic	Zfp367	synonymous SNV	"Zfp367:NM_175494:exon3:c.C630T:p.T210T,Zfp367:NM_001361047:exon4:c.C288T:p.T96T"	13qB3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.881072027	1	0.7979485	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr13	65195261	PW2017tail	colon	sgMsh2	65195261	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.295	216	0	0	NA	exonic	Nlrp4f	nonsynonymous SNV	Nlrp4f:NM_175290:exon3:c.A569T:p.D190V	13qB3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.988274707	1	0.9995068	ATC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr13	67520694	PW2017tail	colon	sgMsh2	67520694	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	261	0	0	NA	exonic	Zfp87	nonsynonymous SNV	Zfp87:NM_133228:exon3:c.T161C:p.V54A	13qB3	chr13-3559926-119495179	2	1	1	0.597	2	NON-ABERRANT	1	0.914572864	1	0.9921764	GAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	12145452	PW2017tail	colon	sgMsh2	12145452	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	149	0	0	NA	exonic	Ptprg	nonsynonymous SNV	Ptprg:NM_008981:exon10:c.G1295A:p.R432Q	14qA1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.911222781	1	0.9389386	CGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	25655200	PW2017tail	colon	sgMsh2	25655200	C	T	SNV	Mutect2;Vardict	2	0.063	67	0	0	NA	exonic	Zmiz1	synonymous SNV	"Zmiz1:NM_001310666:exon18:c.C2232T:p.P744P,Zmiz1:NM_183208:exon18:c.C2250T:p.P750P"	14qA3	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.211055276	3	0.9999889	CCA	synonymous	NA	NA	NA	NA
PW2020T2	chr14	27500372	PW2017tail	colon	sgMsh2	27500372	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.251	155	0	0	NA	exonic	Ccdc66	frameshift deletion	Ccdc66:NM_177111:exon4:c.413delA:p.N138Tfs*6	14qA3	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.840871022	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
PW2020T2	chr14	34228045	PW2017tail	colon	sgMsh2	34228045	C	-	Deletion	Strelka2;Vardict	2	0.1	50	0	0	NA	exonic	Syt15	frameshift deletion	Syt15:NM_181529:exon8:c.1121delC:p.L376Wfs*4	14qB	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.335008375	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW2020T2	chr14	35811564	PW2017tail	colon	sgMsh2	35811564	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	112	0	0	NA	exonic	4930596D02Rik	synonymous SNV	4930596D02Rik:NM_001033766:exon2:c.G246A:p.V82V	14qB	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.877721943	1	0.7787393	GCA	synonymous	NA	NA	NA	NA
PW2020T2	chr14	48250601	PW2017tail	colon	sgMsh2	48250601	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	161	0	0	NA	exonic	Peli2	nonsynonymous SNV	Peli2:NM_033602:exon4:c.C401T:p.T134I	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.519262982	2	0.9999659	ACC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	50126697	PW2017tail	colon	sgMsh2	50126697	T	C	SNV	Mutect2;MuSe;Vardict	3	0.118	388	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.T119C:p.L40P	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.395309883	3	0.9999923	CTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	50789927	PW2017tail	colon	sgMsh2	50789927	A	-	Deletion	Mutect2;Vardict	2	0.058	144	0	0	NA	exonic	Ccnb1ip1	frameshift deletion	Ccnb1ip1:NM_001111119:exon4:c.717delT:p.F239Lfs*61	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr14	51906516	PW2017tail	colon	sgMsh2	51906516	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	271	0	0	NA	exonic	Ndrg2	nonsynonymous SNV	"Ndrg2:NM_001145959:exon14:c.T904G:p.Y302D,Ndrg2:NM_001360270:exon14:c.T913G:p.Y305D,Ndrg2:NM_001360271:exon14:c.T904G:p.Y302D,Ndrg2:NM_001360272:exon14:c.T904G:p.Y302D,Ndrg2:NM_001360276:exon14:c.T904G:p.Y302D,Ndrg2:NM_001360264:exon15:c.T955G:p.Y319D,Ndrg2:NM_001360265:exon15:c.T946G:p.Y316D,Ndrg2:NM_001360266:exon15:c.T946G:p.Y316D,Ndrg2:NM_001360269:exon15:c.T946G:p.Y316D,Ndrg2:NM_001360273:exon15:c.T904G:p.Y302D,Ndrg2:NM_001360274:exon15:c.T904G:p.Y302D,Ndrg2:NM_013864:exon15:c.T946G:p.Y316D,Ndrg2:NM_001360267:exon16:c.T946G:p.Y316D,Ndrg2:NM_001360268:exon16:c.T946G:p.Y316D"	14qC1	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.391959799	3	0.9998564	TAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	52007008	PW2017tail	colon	sgMsh2	52007008	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	59	0	0	NA	exonic	Zfp219	synonymous SNV	"Zfp219:NM_001253696:exon4:c.C1578A:p.S526S,Zfp219:NM_001253695:exon5:c.C1713A:p.S571S,Zfp219:NM_027248:exon5:c.C1713A:p.S571S,Zfp219:NM_001253694:exon6:c.C1713A:p.S571S"	14qC2	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.944723618	1	0.8373867	GGG	synonymous	NA	NA	NA	NA
PW2020T2	chr14	84447952	PW2017tail	colon	sgMsh2	84447952	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	133	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.C1858T:p.R620C	14qD3	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.425460637	3	0.678196	GCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr14	103276443	PW2017tail	colon	sgMsh2	103276443	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.136	123	0	0	NA	exonic	Mycbp2	synonymous SNV	Mycbp2:NM_207215:exon16:c.C2457T:p.D819D	14qE2.3	chr14-3072210-123592557	2	1	1	0.597	2	NON-ABERRANT	1	0.45561139	2	0.09864376	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr15	10393782	PW2017tail	colon	sgMsh2	10393782	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	235	0	0	NA	exonic	Agxt2	synonymous SNV	"Agxt2:NM_001031851:exon11:c.C1245T:p.C415C,Agxt2:NM_001310735:exon11:c.C1161T:p.C387C,Agxt2:NM_001310736:exon11:c.C1158T:p.C386C"	15qA1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	1	0.9752047	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr15	12149561	PW2017tail	colon	sgMsh2	12149561	A	-	Deletion	Strelka2;Vardict	2	0.2564	39	0	0	NA	exonic	Zfr	frameshift deletion	Zfr:NM_011767:exon7:c.1066delA:p.K358Rfs*4	15qA1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.858961474	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2020T2	chr15	12261911	PW2017tail	colon	sgMsh2	12261911	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	176	0	0	NA	exonic	Mtmr12	nonsynonymous SNV	"Mtmr12:NM_001356498:exon12:c.G562A:p.E188K,Mtmr12:NM_172958:exon12:c.G1171A:p.E391K"	15qA1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.328308208	3	0.9999994	GGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr15	23474053	PW2017tail	colon	sgMsh2	23474053	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	126	0	0	NA	exonic	Cdh18	nonsynonymous SNV	Cdh18:NM_001081299:exon12:c.G2008A:p.A670T	15qA2	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.177554439	3	1.01E-09	AGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr15	28327307	PW2017tail	colon	sgMsh2	28327307	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.179	139	0	0	NA	exonic	Dnah5	frameshift deletion	Dnah5:NM_133365:exon37:c.6169delA:p.K2058Nfs*10	15qB1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.599664992	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr15	28458640	PW2017tail	colon	sgMsh2	28458640	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	147	0	0	NA	exonic	Dnah5	synonymous SNV	Dnah5:NM_133365:exon77:c.C13422T:p.P4474P	15qB1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.335008375	3	0.9999861	CCC	synonymous	NA	NA	NA	NA
PW2020T2	chr15	76715627	PW2017tail	colon	sgMsh2	76715627	T	C	SNV	Mutect2;Vardict	2	0.058	70	0	0	NA	exonic	Lrrc24	synonymous SNV	Lrrc24:NM_198119:exon6:c.A1311G:p.R437R	15qD3	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	3	0.9999974	GTC	synonymous	CGGCGT	16	CGGCGTCGGCGTCGGC	NA
PW2020T2	chr15	81427588	PW2017tail	colon	sgMsh2	81427588	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.385	111	0	0	NA	exonic	Xpnpep3	nonsynonymous SNV	"Xpnpep3:NM_001347075:exon3:c.G494A:p.G165D,Xpnpep3:NM_177310:exon3:c.G494A:p.G165D"	15qE1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.644891122	2	0.9895785	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr15	82814577	PW2017tail	colon	sgMsh2	82814577	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	70	0	0	NA	exonic	Tcf20	frameshift deletion	Tcf20:NM_001114140:exon5:c.5907delC:p.L1970Cfs*32	15qE1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.619765494	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr15	98256873	PW2017tail	colon	sgMsh2	98256873	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.16	87	0	0	NA	exonic	H1f7	frameshift deletion	H1f7:NM_027304:exon1:c.394delG:p.V132Cfs*30	15qF1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.5360134	NA	NA	ACG	frameshift	NA	NA	NA	-1
PW2020T2	chr15	101202988	PW2017tail	colon	sgMsh2	101202988	A	-	Deletion	Strelka2;Vardict	2	0.0854	82	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon6:c.1030delA:p.N346Mfs*21	15qF1	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	0.286097152	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW2020T2	chr15	101477448	PW2017tail	colon	sgMsh2	101477448	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	62	0	0	NA	exonic	Krt86	nonsynonymous SNV	Krt86:NM_010667:exon7:c.G1223A:p.R408H	15qF2	chr15-3280572-103525164	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9228805	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr16	17980931	PW2017tail	colon	sgMsh2	17980931	G	A	SNV	Mutect2;MuSe;Vardict	3	0.098	152	0	0	NA	exonic	Vpreb2	nonsynonymous SNV	Vpreb2:NM_016983:exon2:c.G280A:p.A94T	16qA3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.328308208	3	0.9999957	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr16	19530350	PW2017tail	colon	sgMsh2	19530350	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	484	0	0	NA	exonic	Olfr168	nonsynonymous SNV	Olfr168:NM_146357:exon1:c.A569G:p.D190G	16qA3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	1	0.999367	GTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr16	19769115	PW2017tail	colon	sgMsh2	19769115	T	-	Deletion	Mutect2;Vardict	2	0.052	168	0	0	NA	exonic	B3gnt5	frameshift deletion	"B3gnt5:NM_054052:exon4:c.83delT:p.W30Gfs*8,B3gnt5:NM_001159408:exon5:c.83delT:p.W30Gfs*8,B3gnt5:NM_001159407:exon6:c.83delT:p.W30Gfs*8"	16qA3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.174204355	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr16	20695800	PW2017tail	colon	sgMsh2	20695800	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.303	57	0	0	NA	exonic	Fam131a	synonymous SNV	Fam131a:NM_133778:exon2:c.C150A:p.S50S	16qB1	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.09136671	CCT	synonymous	NA	NA	NA	NA
PW2020T2	chr16	28827850	PW2017tail	colon	sgMsh2	28827850	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.241	131	0	0	NA	exonic	Mb21d2	frameshift deletion	Mb21d2:NM_177718:exon2:c.1371delA:p.K457Nfs*4	16qB2	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.807370184	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr16	34198458	PW2017tail	colon	sgMsh2	34198458	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	133	0	0	NA	exonic	Kalrn	frameshift deletion	"Kalrn:NM_001164268:exon25:c.3933delC:p.G1312Afs*64,Kalrn:NM_177357:exon25:c.3933delC:p.G1312Afs*64"	16qB3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.422110553	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr16	87434467	PW2017tail	colon	sgMsh2	87434467	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	111	0	0	NA	exonic	Rwdd2b	synonymous SNV	Rwdd2b:NM_016924:exon5:c.C798T:p.G266G	16qC3.3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9865596	GGC	synonymous	NA	NA	NA	NA
PW2020T2	chr16	87436602	PW2017tail	colon	sgMsh2	87436602	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.12	152	0	0	NA	exonic	Rwdd2b	synonymous SNV	Rwdd2b:NM_016924:exon4:c.G609A:p.P203P	16qC3.3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.40201005	3	0.9749071	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr16	91421841	PW2017tail	colon	sgMsh2	91421841	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	144	0	0	NA	exonic	Il10rb	nonsynonymous SNV	Il10rb:NM_008349:exon6:c.C761T:p.T254I	16qC3.3	chr16-3592317-97850976	2	1	1	0.597	2	NON-ABERRANT	1	0.120603015	3	1.00E-09	ACC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	5975805	PW2017tail	colon	sgMsh2	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	201	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.737018425	2	0.9857938	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2020T2	chr17	15504311	PW2017tail	colon	sgMsh2	15504311	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.304	65	0	0	NA	exonic	Tbp	nonsynonymous SNV	Tbp:NM_013684:exon3:c.T92C:p.M31T	17qA2	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9304222	ATG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	20278473	PW2017tail	colon	sgMsh2	20278473	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.251	152	0	0	NA	exonic	Vmn2r106	nonsynonymous SNV	"Vmn2r106:NM_001104568:exon3:c.C1175T:p.A392V,Vmn2r106:NM_001385160:exon3:c.C1175T:p.A392V"	17qA3.2	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.840871022	1	0.5946881	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	27564197	PW2017tail	colon	sgMsh2	27564199	TTC	-	Deletion	Mutect2;Vardict	2	0.037	141	0	0	NA	exonic	AI413582	nonframeshift deletion	AI413582:NM_001002895:exon4:c.193_195del:p.E65del	17qA3.3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.123953099	NA	NA	GTT	inframe	NA	NA	NA	-3
PW2020T2	chr17	30988024	PW2017tail	colon	sgMsh2	30988024	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.119	169	0	0	NA	exonic	Umodl1	frameshift insertion	Umodl1:NM_177465:exon12:c.2389dupT:p.L797Ffs*8	17qA3.3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.398659966	NA	NA	CCT	frameshift	NA	NA	NA	1
PW2020T2	chr17	31322177	PW2017tail	colon	sgMsh2	31322177	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	116	0	0	NA	exonic	Slc37a1	nonsynonymous SNV	"Slc37a1:NM_001242427:exon8:c.G642T:p.W214C,Slc37a1:NM_153062:exon8:c.G642T:p.W214C"	17qA3.3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.311557789	3	0.9999812	GGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	33176861	PW2017tail	colon	sgMsh2	33176861	G	-	Deletion	Mutect2;Vardict	2	0.058	297	0	0	NA	exonic	Olfr55	frameshift deletion	Olfr55:NM_010998:exon1:c.446delG:p.V150Lfs*9	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW2020T2	chr17	34115697	PW2017tail	colon	sgMsh2	34115697	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.149	311	0	0	NA	exonic	Brd2	frameshift deletion	"Brd2:NM_001204973:exon5:c.578delA:p.N193Tfs*8,Brd2:NM_010238:exon5:c.578delA:p.N193Tfs*8"	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.499162479	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr17	35127903	PW2017tail	colon	sgMsh2	35127903	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	39	0	0	NA	exonic	D17H6S53E	synonymous SNV	D17H6S53E:NM_033477:exon3:c.A789G:p.E263E	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.8362739	AAC	synonymous	NA	NA	NA	NA
PW2020T2	chr17	37085474	PW2017tail	colon	sgMsh2	37085474	C	A	SNV	Mutect2;Vardict	2	0.02	337	0	0	NA	exonic	Olfr90	nonsynonymous SNV	Olfr90:NM_146477:exon1:c.G690T:p.K230N	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.067001675	3	1	CCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	38208747	PW2017tail	colon	sgMsh2	38208747	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.309	218	0	0	NA	exonic	Olfr135	synonymous SNV	Olfr135:NM_146332:exon1:c.T501G:p.P167P	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9997406	CTC	synonymous	NA	NA	NA	NA
PW2020T2	chr17	38305341	PW2017tail	colon	sgMsh2	38305341	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	195	0	0	NA	exonic	Olfr137	nonsynonymous SNV	Olfr137:NM_146488:exon1:c.T119G:p.L40R	17qB1	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9993924	CAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	45549389	PW2017tail	colon	sgMsh2	45549389	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.4	18	0	0	NA	exonic	Tmem151b	frameshift deletion	Tmem151b:NM_001013749:exon1:c.11delC:p.P4Lfs*77	17qB3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.67001675	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr17	45733719	PW2017tail	colon	sgMsh2	45733719	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	43	0	0	NA	exonic	1600014C23Rik	synonymous SNV	1600014C23Rik:NM_028164:exon1:c.C75A:p.T25T	17qB3	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.8555521	GGG	synonymous	NA	NA	NA	NA
PW2020T2	chr17	46830985	PW2017tail	colon	sgMsh2	46830985	C	T	SNV	Mutect2;Vardict	2	0.066	82	0	0	NA	exonic	Bicral	nonsynonymous SNV	Bicral:NM_001100452:exon1:c.G7A:p.D3N	17qC	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.221105528	3	0.9999985	TCA	nonsynonymous	GTCATC	12	GTCATCGTCATC	NA
PW2020T2	chr17	57023276	PW2017tail	colon	sgMsh2	57023276	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.181	68	0	0	NA	exonic	Khsrp	frameshift deletion	Khsrp:NM_010613:exon16:c.1828delC:p.Q610Sfs*123	17qD	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.606365159	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr17	74580551	PW2017tail	colon	sgMsh2	74580551	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	84	0	0	NA	exonic	Birc6	nonsynonymous SNV	Birc6:NM_007566:exon9:c.C2873T:p.A958V	17qE2	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.425460637	3	0.5921433	GCG	nonsynonymous	GTGC	8	GTGCGTGC	NA
PW2020T2	chr17	75544819	PW2017tail	colon	sgMsh2	75544819	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	90	0	0	NA	exonic	Fam98a	nonsynonymous SNV	Fam98a:NM_133747:exon3:c.C266T:p.P89L	17qE2	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.398659966	3	0.09167436	CGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr17	87718638	PW2017tail	colon	sgMsh2	87718638	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.419	70	0	0	NA	exonic	Msh2	frameshift insertion	Msh2:NM_008628:exon13:c.2044dupA:p.T682Nfs*16	17qE4	chr17-3148703-94739695	2	1	1	0.597	2	NON-ABERRANT	1	0.701842546	NA	NA	AGA	frameshift	NA	NA	NA	1
PW2020T2	chr18	19973917	PW2017tail	colon	sgMsh2	19973917	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.091	115	0	0	NA	exonic	Dsc3	frameshift deletion	"Dsc3:NM_001291809:exon11:c.1533delA:p.K511Nfs*23,Dsc3:NM_007882:exon11:c.1533delA:p.K511Nfs*23"	18qA2	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.304857621	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2020T2	chr18	50166902	PW2017tail	colon	sgMsh2	50166902	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	142	0	0	NA	exonic	Hsd17b4	nonsynonymous SNV	Hsd17b4:NM_008292:exon14:c.T1225C:p.Y409H	18qD1	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	1	0.0917152	GTA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr18	61002390	PW2017tail	colon	sgMsh2	61002390	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	174	0	0	NA	exonic	Slc6a7	nonsynonymous SNV	Slc6a7:NM_201353:exon9:c.C1136A:p.P379H	18qE1	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.154103853	3	1	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr18	65742226	PW2017tail	colon	sgMsh2	65742226	-	G	Insertion	Mutect2;Vardict	2	0.071	128	0	0	NA	exonic	Oacyl	frameshift insertion	Oacyl:NM_177028:exon11:c.1381dupG:p.L463Pfs*17	18qE1	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	0.237855946	NA	NA	TCG	frameshift	G	5	GGGGG	1
PW2020T2	chr18	69678037	PW2017tail	colon	sgMsh2	69678037	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.312	179	0	0	NA	exonic	Tcf4	synonymous SNV	"Tcf4:NM_001083967:exon17:c.C1554T:p.G518G,Tcf4:NM_001361126:exon17:c.C1554T:p.G518G,Tcf4:NM_001361127:exon17:c.C1554T:p.G518G,Tcf4:NM_001361128:exon17:c.C1551T:p.G517G,Tcf4:NM_001361129:exon17:c.C1551T:p.G517G,Tcf4:NM_013685:exon17:c.C1554T:p.G518G"	18qE2	chr18-3281580-89095437	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9989019	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr19	5052350	PW2017tail	colon	sgMsh2	5052350	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.229	48	0	0	NA	exonic	Rin1	frameshift deletion	"Rin1:NM_001374052:exon5:c.514delC:p.L173Yfs*29,Rin1:NM_001374051:exon6:c.919delC:p.L308Yfs*29,Rin1:NM_145495:exon6:c.886delC:p.L297Yfs*29"	19qA	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.767169179	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW2020T2	chr19	10945290	PW2017tail	colon	sgMsh2	10945290	C	T	SNV	Mutect2;Vardict	2	0.081	68	0	0	NA	exonic	Ccdc86	nonsynonymous SNV	Ccdc86:NM_023731:exon2:c.G1079A:p.R360H	19qA	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.271356784	3	0.999774	GCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr19	29296533	PW2017tail	colon	sgMsh2	29296533	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.076	142	0	0	NA	exonic	Jak2	synonymous SNV	"Jak2:NM_001048177:exon15:c.G2016A:p.G672G,Jak2:NM_008413:exon16:c.G2016A:p.G672G"	19qC1	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.254606365	3	3.87E-09	GGA	synonymous	NA	NA	NA	NA
PW2020T2	chr19	36887112	PW2017tail	colon	sgMsh2	36887112	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	260	0	0	NA	exonic	Tnks2	nonsynonymous SNV	Tnks2:NM_001163635:exon24:c.G3035A:p.R1012Q	19qC2	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.090452261	3	1	CGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr19	39735600	PW2017tail	colon	sgMsh2	39735600	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.269	274	0	0	NA	exonic	Cyp2c68	nonsynonymous SNV	Cyp2c68:NM_001039555:exon4:c.A619T:p.I207F	19qC3	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.901172529	1	0.985941	ATT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr19	40723227	PW2017tail	colon	sgMsh2	40723227	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	125	0	0	NA	exonic	Entpd1	nonsynonymous SNV	"Entpd1:NM_001304721:exon4:c.C490T:p.R164C,Entpd1:NM_009848:exon4:c.C403T:p.R135C"	19qC3	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.237855946	3	7.14E-09	GCG	nonsynonymous	GCTT	8	GCTTGCTT	NA
PW2020T2	chr19	41238772	PW2017tail	colon	sgMsh2	41238772	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	117	0	0	NA	exonic	Tm9sf3	nonsynonymous SNV	Tm9sf3:NM_133352:exon7:c.C859A:p.L287M	19qC3	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.150753769	3	1.01E-09	AGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr19	42749391	PW2017tail	colon	sgMsh2	42749391	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.085	122	0	0	NA	exonic	Pyroxd2	nonsynonymous SNV	Pyroxd2:NM_029011:exon2:c.T140G:p.L47R	19qC3	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.284757119	3	0.9999992	CAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr19	47650777	PW2017tail	colon	sgMsh2	47650777	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.321	55	0	0	NA	exonic	Col17a1	synonymous SNV	"Col17a1:NM_001290825:exon46:c.C3328T:p.L1110L,Col17a1:NM_007732:exon46:c.C3328T:p.L1110L"	19qD1	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.09770162	AGG	synonymous	NA	NA	NA	NA
PW2020T2	chr19	48206524	PW2017tail	colon	sgMsh2	48206524	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.25	39	0	0	NA	exonic	Sorcs3	synonymous SNV	Sorcs3:NM_025696:exon1:c.C345A:p.G115G	19qD1	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.837520938	1	0.5518467	GCA	synonymous	NA	NA	NA	NA
PW2020T2	chr19	58786008	PW2017tail	colon	sgMsh2	58786008	A	-	Deletion	Mutect2;Vardict	2	0.087	61	0	0	NA	exonic	1700019N19Rik	frameshift deletion	"1700019N19Rik:NM_001368688:exon6:c.678delT:p.F226Lfs*10,1700019N19Rik:NM_001368689:exon6:c.678delT:p.F226Lfs*10,1700019N19Rik:NM_026208:exon6:c.702delT:p.F234Lfs*10"	19qD2	chr19-3404916-61225035	2	1	1	0.597	2	NON-ABERRANT	1	0.291457286	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW2020T2	chr2	13388944	PW2017tail	colon	sgMsh2	13388944	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.374	139	0	0	NA	exonic	Cubn	nonsynonymous SNV	Cubn:NM_001081084:exon29:c.G4245T:p.K1415N	2qA1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.626465662	2	0.9982108	CCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	13430955	PW2017tail	colon	sgMsh2	13430955	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.028	194	0	0	NA	exonic	Cubn	synonymous SNV	Cubn:NM_001081084:exon23:c.C3189T:p.N1063N	2qA1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.093802345	3	1	AGT	synonymous	NA	NA	NA	NA
PW2020T2	chr2	24187191	PW2017tail	colon	sgMsh2	24187191	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.267	168	0	0	NA	exonic	Il1f9	frameshift deletion	Il1f9:NM_153511:exon2:c.14delA:p.N8Tfs*59	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.894472362	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
PW2020T2	chr2	24616912	PW2017tail	colon	sgMsh2	24616912	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	48	0	0	NA	exonic	Cacna1b	nonsynonymous SNV	"Cacna1b:NM_007579:exon41:c.C5540T:p.A1847V,Cacna1b:NM_001042528:exon42:c.C5657T:p.A1886V"	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.45561139	2	0.7251111	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	26981119	PW2017tail	colon	sgMsh2	26981119	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	58	0	0	NA	exonic	Adamts13	nonsynonymous SNV	"Adamts13:NM_001001322:exon7:c.C743T:p.A248V,Adamts13:NM_001290463:exon7:c.C743T:p.A248V,Adamts13:NM_001290464:exon7:c.C743T:p.A248V,Adamts13:NM_001290465:exon7:c.C743T:p.A248V"	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.958123953	1	0.8567794	GCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	27281911	PW2017tail	colon	sgMsh2	27281911	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.327	68	0	0	NA	exonic	Vav2	frameshift deletion	Vav2:NM_009500:exon17:c.1683delC:p.C562Afs*2	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr2	29065547	PW2017tail	colon	sgMsh2	29065547	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.317	82	0	0	NA	exonic	Ttf1	frameshift deletion	Ttf1:NM_009442:exon2:c.922delA:p.N310Tfs*70	2qA3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW2020T2	chr2	32781435	PW2017tail	colon	sgMsh2	32781435	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	77	0	0	NA	exonic	Cfap157	nonsynonymous SNV	Cfap157:NM_025619:exon2:c.G358A:p.A120T	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.284757119	3	0.9998399	GCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	35127513	PW2017tail	colon	sgMsh2	35127513	A	-	Deletion	Strelka2;Vardict	2	0.2787	61	0	0	NA	exonic	Cntrl	frameshift deletion	"Cntrl:NM_001379274:exon9:c.1331delA:p.I447fs*0,Cntrl:NM_012018:exon9:c.1331delA:p.I447fs*0"	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.933668342	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
PW2020T2	chr2	36569422	PW2017tail	colon	sgMsh2	36569422	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.274	299	0	0	NA	exonic	Olfr344	nonsynonymous SNV	Olfr344:NM_146628:exon1:c.G823A:p.A275T	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.917922948	1	0.996813	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	37787413	PW2017tail	colon	sgMsh2	37787413	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.391	48	0	0	NA	exonic	Crb2	nonsynonymous SNV	Crb2:NM_001163566:exon5:c.G916A:p.A306T	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.654941374	2	0.8523703	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	37791525	PW2017tail	colon	sgMsh2	37791525	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	85	0	0	NA	exonic	Crb2	synonymous SNV	Crb2:NM_001163566:exon8:c.C2379A:p.P793P	2qB	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.793969849	2	0.6452323	CCA	synonymous	NA	NA	NA	NA
PW2020T2	chr2	51952780	PW2017tail	colon	sgMsh2	51952780	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	70	0	0	NA	exonic	Nmi	nonsynonymous SNV	"Nmi:NM_001141948:exon5:c.T446C:p.F149S,Nmi:NM_019401:exon5:c.T446C:p.F149S,Nmi:NM_001141949:exon6:c.T446C:p.F149S"	2qC1.1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9414906	GAA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	52107728	PW2017tail	colon	sgMsh2	52107728	A	-	Deletion	Strelka2;Vardict	2	0.2286	70	0	0	NA	exonic	Rif1	frameshift deletion	"Rif1:NM_001355414:exon26:c.3058delA:p.V1024fs*0,Rif1:NM_001355415:exon26:c.3037delA:p.V1017fs*0,Rif1:NM_175238:exon26:c.3058delA:p.V1024fs*0"	2qC1.1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.765829146	NA	NA	TAA	frameshift	A	12	AAAAAAAAAAAA	-1
PW2020T2	chr2	62286865	PW2017tail	colon	sgMsh2	62286865	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.314	151	0	0	NA	exonic	Slc4a10	nonsynonymous SNV	"Slc4a10:NM_001242379:exon16:c.C2077T:p.P693S,Slc4a10:NM_001242381:exon16:c.C2074T:p.P692S,Slc4a10:NM_001242383:exon16:c.C2074T:p.P692S,Slc4a10:NM_001362673:exon16:c.C2074T:p.P692S,Slc4a10:NM_001362674:exon16:c.C2074T:p.P692S,Slc4a10:NM_001362676:exon16:c.C2074T:p.P692S,Slc4a10:NM_033552:exon16:c.C2077T:p.P693S,Slc4a10:NM_001242378:exon17:c.C2167T:p.P723S,Slc4a10:NM_001242380:exon17:c.C2167T:p.P723S,Slc4a10:NM_001242382:exon17:c.C2164T:p.P722S,Slc4a10:NM_001362671:exon17:c.C2164T:p.P722S,Slc4a10:NM_001362672:exon17:c.C2161T:p.P721S,Slc4a10:NM_001362675:exon17:c.C2164T:p.P722S"	2qC1.3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9969104	GCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	69510466	PW2017tail	colon	sgMsh2	69510466	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.262	98	0	0	NA	exonic	Lrp2	frameshift insertion	Lrp2:NM_001081088:exon21:c.3063dupC:p.T1022Hfs*23	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.877721943	NA	NA	GTG	frameshift	G	5	GGGGG	1
PW2020T2	chr2	69656911	PW2017tail	colon	sgMsh2	69656911	T	-	Deletion	Mutect2;Vardict	2	0.054	366	0	0	NA	exonic	Bbs5	frameshift deletion	"Bbs5:NM_001362706:exon6:c.132delT:p.F46Lfs*4,Bbs5:NM_028284:exon7:c.537delT:p.F181Lfs*4"	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.180904523	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr2	69973563	PW2017tail	colon	sgMsh2	69973563	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	60	0	0	NA	exonic	Ubr3	frameshift deletion	"Ubr3:NM_001303033:exon23:c.3499delA:p.I1169Sfs*94,Ubr3:NM_177783:exon23:c.3499delA:p.I1169Sfs*94"	2qC2	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr2	76354128	PW2017tail	colon	sgMsh2	76354129	TC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.305	246	0	0	NA	exonic	Cyct	frameshift deletion	Cyct:NM_009989:exon4:c.277_278del:p.E93Rfs*3	2qC3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	TTC	frameshift	TC	8	TCTCTCTC	-2
PW2020T2	chr2	87372011	PW2017tail	colon	sgMsh2	87372011	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.275	229	0	0	NA	exonic	Olfr1121	nonsynonymous SNV	Olfr1121:NM_146348:exon1:c.C478T:p.P160S	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.921273032	1	0.9902087	GCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	87737497	PW2017tail	colon	sgMsh2	87737497	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	228	0	0	NA	exonic	Olfr1138	nonsynonymous SNV	Olfr1138:NM_146639:exon1:c.C826T:p.L276F	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.981574539	1	0.99954	AGG	nonsynonymous	A	6	AAAAAA	NA
PW2020T2	chr2	87949278	PW2017tail	colon	sgMsh2	87949278	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.398	59	0	0	NA	exonic	Olfr1156	frameshift deletion	Olfr1156:NM_146817:exon1:c.954delT:p.F318Lfs*9	2qD	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.666666667	NA	NA	CAA	frameshift	A	15	AAAAACAAAAAAAAA	-1
PW2020T2	chr2	90265525	PW2017tail	colon	sgMsh2	90265525	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	148	0	0	NA	exonic	Olfr1271	nonsynonymous SNV	Olfr1271:NM_146793:exon1:c.C904A:p.Q302K	2qE1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.174204355	3	1.00E-09	TGG	nonsynonymous	T	5	TTTTT	NA
PW2020T2	chr2	111621763	PW2017tail	colon	sgMsh2	111621763	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.105	329	0	0	NA	exonic	Olfr1297	frameshift deletion	Olfr1297:NM_146888:exon1:c.310delT:p.S104Pfs*13	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr2	111664386	PW2017tail	colon	sgMsh2	111664386	C	A	SNV	Mutect2;Vardict	2	0.018	355	0	0	NA	exonic	Olfr1299	synonymous SNV	Olfr1299:NM_146884:exon2:c.C159A:p.R53R	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.060301508	3	1	GCC	synonymous	NA	NA	NA	NA
PW2020T2	chr2	111873686	PW2017tail	colon	sgMsh2	111873686	A	C	SNV	Mutect2;Vardict	2	0.029	203	0	0	NA	exonic	Olfr1305	nonsynonymous SNV	Olfr1305:NM_146401:exon1:c.T168G:p.H56Q	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.097152429	3	1	AAT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	111945069	PW2017tail	colon	sgMsh2	111945069	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.318	413	0	0	NA	exonic	Olfr1307	nonsynonymous SNV	Olfr1307:NM_001011787:exon1:c.C386A:p.P129H	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9999998	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	112712335	PW2017tail	colon	sgMsh2	112712335	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	135	0	0	NA	exonic	Ryr3	synonymous SNV	Ryr3:NM_001319156:exon66:c.A9468G:p.G3156G	2qE3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.69681742	2	0.9820947	GTC	synonymous	NA	NA	NA	NA
PW2020T2	chr2	118532634	PW2017tail	colon	sgMsh2	118532634	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	104	0	0	NA	exonic	Bmf	stopgain	"Bmf:NM_001311140:exon4:c.G497A:p.W166X,Bmf:NM_001331221:exon4:c.G482A:p.W161X,Bmf:NM_138313:exon5:c.G740A:p.W247X"	2qE5	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9826531	CCA	nonsynonymous	CACG	8	CACGCACG	NA
PW2020T2	chr2	118791288	PW2017tail	colon	sgMsh2	118791288	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.294	68	0	0	NA	exonic	Disp2	nonsynonymous SNV	Disp2:NM_170593:exon8:c.G2500A:p.A834T	2qE5	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.984924623	1	0.9223058	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	120326075	PW2017tail	colon	sgMsh2	120326075	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	124	0	0	NA	exonic	Vps39	synonymous SNV	"Vps39:NM_001363053:exon12:c.T1239A:p.T413T,Vps39:NM_001363054:exon12:c.T936A:p.T312T,Vps39:NM_178851:exon13:c.T1308A:p.T436T,Vps39:NM_147153:exon14:c.T1341A:p.T447T"	2qE5	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9916505	GAG	synonymous	NA	NA	NA	NA
PW2020T2	chr2	120713811	PW2017tail	colon	sgMsh2	120713811	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	268	0	0	NA	exonic	Stard9	synonymous SNV	Stard9:NM_001370940:exon31:c.C13482T:p.C4494C	2qE5	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.442211055	2	0.8478345	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr2	121434011	PW2017tail	colon	sgMsh2	121434011	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.067	155	0	0	NA	exonic	Pdia3	nonsynonymous SNV	Pdia3:NM_007952:exon9:c.T1055C:p.F352S	2qE5	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.224455611	3	1.01E-09	TTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	130975993	PW2017tail	colon	sgMsh2	130975993	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.324	195	0	0	NA	exonic	Atrn	nonsynonymous SNV	Atrn:NM_009730:exon15:c.G2466T:p.L822F	2qF1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9993924	TGG	nonsynonymous	T	5	TTTTT	NA
PW2020T2	chr2	144257148	PW2017tail	colon	sgMsh2	144257148	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	158	0	0	NA	exonic	Snx5	frameshift deletion	"Snx5:NM_024225:exon6:c.561delT:p.F187Lfs*4,Snx5:NM_001199188:exon7:c.561delT:p.F187Lfs*4"	2qG1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.388609715	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr2	150959912	PW2017tail	colon	sgMsh2	150959912	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.156	53	0	0	NA	exonic	Ninl	frameshift deletion	Ninl:NM_207204:exon11:c.1338delG:p.S447Afs*6	2qG3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.522613065	NA	NA	TCA	frameshift	NA	NA	NA	-1
PW2020T2	chr2	153399446	PW2017tail	colon	sgMsh2	153399446	G	-	Deletion	Strelka2;Vardict	2	0.1013	79	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.339363484	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW2020T2	chr2	154380948	PW2017tail	colon	sgMsh2	154380948	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.105	64	0	0	NA	exonic	Snta1	nonsynonymous SNV	Snta1:NM_009228:exon4:c.G854A:p.S285N	2qH1	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	3	0.9798822	GCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	166080018	PW2017tail	colon	sgMsh2	166080018	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	74	0	0	NA	exonic	Sulf2	nonsynonymous SNV	"Sulf2:NM_001252578:exon15:c.A2071G:p.R691G,Sulf2:NM_001252579:exon15:c.A2170G:p.R724G,Sulf2:NM_028072:exon15:c.A2071G:p.R691G,Sulf2:NM_001355619:exon16:c.A2071G:p.R691G"	2qH3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.50921273	2	0.9839902	CTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	172474169	PW2017tail	colon	sgMsh2	172474169	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.268	121	0	0	NA	exonic	Fam209	nonsynonymous SNV	Fam209:NM_029608:exon2:c.T463C:p.Y155H	2qH3	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.897822446	1	0.8688068	GTA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr2	181351331	PW2017tail	colon	sgMsh2	181351331	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	154	0	0	NA	exonic	Rtel1	nonsynonymous SNV	"Rtel1:NM_001001882:exon24:c.G2105A:p.R702H,Rtel1:NM_001166665:exon24:c.G2105A:p.R702H,Rtel1:NM_001166666:exon24:c.G2105A:p.R702H,Rtel1:NM_001166667:exon24:c.G2105A:p.R702H,Rtel1:NM_001166668:exon24:c.G2105A:p.R702H,Rtel1:NM_001363071:exon25:c.G1178A:p.R393H"	2qH4	chr2-4513773-181815659	2	1	1	0.597	2	NON-ABERRANT	1	0.18760469	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr3	5403921	PW2017tail	colon	sgMsh2	5403921	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.273	93	0	0	NA	exonic	Zfhx4	nonsynonymous SNV	"Zfhx4:NM_001368671:exon10:c.G9216T:p.Q3072H,Zfhx4:NM_030708:exon10:c.G9138T:p.Q3046H"	3qA1	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.914572864	1	0.8636593	AGC	nonsynonymous	CAG	8	CAGCAGCA	NA
PW2020T2	chr3	10347218	PW2017tail	colon	sgMsh2	10347218	A	-	Deletion	Strelka2;Vardict	2	0.2885	52	0	0	NA	exonic	Zfand1	frameshift deletion	Zfand1:NM_001331014:exon3:c.16delT:p.C6Vfs*3	3qA1	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.966499162	NA	NA	CAA	frameshift	A	12	AAAAAAAAAAAA	-1
PW2020T2	chr3	14497302	PW2017tail	colon	sgMsh2	14497302	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	190	0	0	NA	exonic	Slc7a12	synonymous SNV	Slc7a12:NM_080852:exon2:c.A738G:p.L246L	3qA1	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.140703518	3	1	TAC	synonymous	TACT	8	TACTTACT	NA
PW2020T2	chr3	35831499	PW2017tail	colon	sgMsh2	35831499	T	-	Deletion	Strelka2;Vardict	2	0.1081	37	0	0	NA	exonic	Atp11b	frameshift deletion	Atp11b:NM_029570:exon22:c.2640delT:p.Y883Ifs*29	3qB	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.362144054	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW2020T2	chr3	53498178	PW2017tail	colon	sgMsh2	53498178	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	191	0	0	NA	exonic	Stoml3	nonsynonymous SNV	Stoml3:NM_153156:exon3:c.G199A:p.D67N	3qC	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.237855946	3	1.00E-09	TGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr3	58460076	PW2017tail	colon	sgMsh2	58460076	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	117	0	0	NA	exonic	Tsc22d2	synonymous SNV	"Tsc22d2:NM_001347233:exon3:c.A2046G:p.K682K,Tsc22d2:NM_001081229:exon4:c.A2118G:p.K706K"	3qD	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9892076	AAG	synonymous	NA	NA	NA	NA
PW2020T2	chr3	87727973	PW2017tail	colon	sgMsh2	87727973	G	T	SNV	Mutect2;Vardict	2	0.058	73	0	0	NA	exonic	Arhgef11	nonsynonymous SNV	"Arhgef11:NM_001360197:exon27:c.G725T:p.S242I,Arhgef11:NM_001003912:exon28:c.G2675T:p.S892I,Arhgef11:NM_001360195:exon28:c.G2588T:p.S863I"	3qF1	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.194304858	3	0.9999985	AGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr3	98742227	PW2017tail	colon	sgMsh2	98742227	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.297	352	0	0	NA	exonic	Hsd3b3	nonsynonymous SNV	"Hsd3b3:NM_001012306:exon3:c.C614T:p.T205I,Hsd3b3:NM_001161744:exon4:c.C779T:p.T260I,Hsd3b3:NM_001161745:exon4:c.C779T:p.T260I,Hsd3b3:NM_001161742:exon5:c.C779T:p.T260I,Hsd3b3:NM_001161743:exon5:c.C779T:p.T260I"	3qF2.2	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.994974874	1	0.9999973	GGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr3	132732177	PW2017tail	colon	sgMsh2	132732177	-	A	Insertion	Strelka2;Vardict	2	0.2844	109	0	0	NA	exonic	Tbck	frameshift insertion	Tbck:NM_001163455:exon15:c.1363dupA:p.N457Kfs*9	3qG3	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	0.952763819	NA	NA	ACA	frameshift	A	8	AAAAAAAA	1
PW2020T2	chr3	144749738	PW2017tail	colon	sgMsh2	144749738	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	299	0	0	NA	exonic	Clca3a1	synonymous SNV	Clca3a1:NM_009899:exon8:c.C1293T:p.S431S	3qH2	chr3-5403921-159911278	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9999871	CGC	synonymous	NA	NA	NA	NA
PW2020T2	chr3	159923490	PW2017tail	colon	sgMsh2	159923490	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	149	0	0	NA	exonic	Wls	stopgain	"Wls:NM_001356350:exon11:c.G1426T:p.G476X,Wls:NM_026582:exon11:c.G1426T:p.G476X,Wls:NM_001356349:exon12:c.G1126T:p.G376X"	3qH4	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	TGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr4	11357577	PW2017tail	colon	sgMsh2	11357577	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.358	105	0	0	NA	exonic	Esrp1	frameshift deletion	"Esrp1:NM_001290383:exon12:c.1531delA:p.T511Pfs*1,Esrp1:NM_001347052:exon12:c.1534delA:p.T512Pfs*1,Esrp1:NM_194055:exon12:c.1534delA:p.T512Pfs*1"	4qA1	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr4	32580087	PW2017tail	colon	sgMsh2	32580087	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	75	0	0	NA	exonic	Bach2	frameshift deletion	Bach2:NM_001109661:exon5:c.2311delG:p.A772Rfs*37	4qA5	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.405360134	NA	NA	AGG	frameshift	NA	NA	NA	-1
PW2020T2	chr4	41202284	PW2017tail	colon	sgMsh2	41202285	GA	-	Deletion	Strelka2;Vardict	2	0.0952	42	0	0	NA	exonic	Ubap2	frameshift deletion	Ubap2:NM_026872:exon18:c.2145_2146del:p.Q716Afs*76	4qA5	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.318927973	NA	NA	TGA	frameshift	GCTGA	11	GCTGAGCTGAG	-2
PW2020T2	chr4	46382364	PW2017tail	colon	sgMsh2	46382364	-	CT	Insertion	Strelka2;Vardict	2	0.2576	132	0	0	NA	exonic	Trmo	frameshift insertion	"Trmo:NM_001347095:exon4:c.730_731insAG:p.A244Efs*26,Trmo:NM_029086:exon4:c.730_731insAG:p.A244Efs*26"	4qB1	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.862981575	NA	NA	CGC	frameshift	CT	10	CTCTCTCTCT	2
PW2020T2	chr4	100490118	PW2017tail	colon	sgMsh2	100490118	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	120	0	0	NA	exonic	Ube2u	frameshift deletion	Ube2u:NM_001033773:exon5:c.363delA:p.N123Ifs*2	4qC6	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.201005025	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr4	101836933	PW2017tail	colon	sgMsh2	101836933	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	170	0	0	NA	exonic	Pramel17	nonsynonymous SNV	Pramel17:NM_001033790:exon3:c.A752G:p.K251R	4qC6	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9984684	CTT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr4	111454234	PW2017tail	colon	sgMsh2	111454234	A	-	Deletion	Strelka2;Vardict	2	0.3	80	0	0	NA	exonic	Bend5	frameshift deletion	Bend5:NM_026279:exon5:c.1044delA:p.K351Rfs*25	4qD1	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW2020T2	chr4	114194705	PW2017tail	colon	sgMsh2	114194705	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	252	0	0	NA	exonic	Skint11	synonymous SNV	Skint11:NM_001166027:exon3:c.A249G:p.L83L	4qD1	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.978224456	1	0.9997474	TAT	synonymous	NA	NA	NA	NA
PW2020T2	chr4	120934385	PW2017tail	colon	sgMsh2	120934385	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.268	182	0	0	NA	exonic	Zfp69	frameshift deletion	"Zfp69:NM_001005788:exon5:c.558delA:p.G187Efs*16,Zfp69:NM_001384119:exon5:c.555delA:p.G186Efs*16"	4qD2.2	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.897822446	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr4	130167721	PW2017tail	colon	sgMsh2	130167721	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.323	131	0	0	NA	exonic	Tinagl1	synonymous SNV	"Tinagl1:NM_001168333:exon7:c.T831A:p.A277A,Tinagl1:NM_023476:exon7:c.T831A:p.A277A"	4qD2.2	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9935441	AAG	synonymous	NA	NA	NA	NA
PW2020T2	chr4	132497464	PW2017tail	colon	sgMsh2	132497464	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.317	73	0	0	NA	exonic	Sesn2	nonsynonymous SNV	Sesn2:NM_144907:exon7:c.C928A:p.P310T	4qD2.3	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9473163	GGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr4	150867170	PW2017tail	colon	sgMsh2	150867170	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.077	82	0	0	NA	exonic	Errfi1	nonsynonymous SNV	"Errfi1:NM_001356323:exon4:c.G1054A:p.A352T,Errfi1:NM_133753:exon4:c.G1054A:p.A352T"	4qE2	chr4-3738956-156233518	2	1	1	0.597	2	NON-ABERRANT	1	0.257956449	3	0.9999838	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	21761716	PW2017tail	colon	sgMsh2	21761718	CTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.332	146	0	0	NA	exonic	Dnajc2	nonframeshift deletion	Dnajc2:NM_009584:exon13:c.1250_1252del:p.E417del	5qA3	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	ACT	inframe	CTT	8	CTTCTTCT	-3
PW2020T2	chr5	31731035	PW2017tail	colon	sgMsh2	31731035	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.029	254	0	0	NA	exonic	Babam2	nonsynonymous SNV	"Babam2:NM_144541:exon3:c.C197T:p.T66M,Babam2:NM_181280:exon4:c.C170T:p.T57M,Babam2:NM_181279:exon5:c.C308T:p.T103M"	5qB1	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.097152429	3	1	ACG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	34866588	PW2017tail	colon	sgMsh2	34866588	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	207	0	0	NA	exonic	Htt	synonymous SNV	Htt:NM_010414:exon40:c.C5179T:p.L1727L	5qB2	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.103852596	3	1	GCT	synonymous	TGGT	8	TGGTTGGT	NA
PW2020T2	chr5	37378400	PW2017tail	colon	sgMsh2	37378400	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.305	77	0	0	NA	exonic	Evc2	nonsynonymous SNV	Evc2:NM_145920:exon9:c.T1418C:p.L473P	5qB3	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9542351	CTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	51498201	PW2017tail	colon	sgMsh2	51498201	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	80	0	0	NA	exonic	Ppargc1a	nonsynonymous SNV	Ppargc1a:NM_008904:exon3:c.T256G:p.L86V	5qC1	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	3	0.9927873	AAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	83354989	PW2017tail	colon	sgMsh2	83354989	C	T	SNV	Mutect2;Strelka2;MuSe	3	0.109	129	0	0	NA	exonic	Tecrl	synonymous SNV	Tecrl:NM_153801:exon1:c.G12A:p.R4R	5qE1	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.365159129	3	0.9988422	GCC	synonymous	NA	NA	NA	NA
PW2020T2	chr5	101809944	PW2017tail	colon	sgMsh2	101809944	T	-	Deletion	Strelka2;Vardict	2	0.1861	231	0	0	NA	exonic	Cds1	frameshift deletion	Cds1:NM_173370:exon8:c.781delT:p.F263Lfs*5	5qE4	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.623450586	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
PW2020T2	chr5	105607521	PW2017tail	colon	sgMsh2	105607521	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.248	227	0	0	NA	exonic	Lrrc8c	synonymous SNV	Lrrc8c:NM_133897:exon4:c.G1161A:p.R387R	5qE5	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.830820771	2	0.507991	GGT	synonymous	NA	NA	NA	NA
PW2020T2	chr5	113751238	PW2017tail	colon	sgMsh2	113751238	G	A	SNV	Mutect2;Vardict	2	0.04	115	0	0	NA	exonic	Sart3	synonymous SNV	"Sart3:NM_001356621:exon12:c.C1578T:p.Y526Y,Sart3:NM_001356623:exon12:c.C357T:p.Y119Y,Sart3:NM_016926:exon12:c.C1524T:p.Y508Y"	5qF	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.13400335	3	1.00E-09	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr5	117098366	PW2017tail	colon	sgMsh2	117098366	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.261	78	0	0	NA	exonic	Suds3	synonymous SNV	"Suds3:NM_001122666:exon10:c.C708A:p.S236S,Suds3:NM_178622:exon10:c.C708A:p.S236S"	5qF	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.874371859	1	0.7056765	AGG	synonymous	NA	NA	NA	NA
PW2020T2	chr5	120483599	PW2017tail	colon	sgMsh2	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.356	13	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.0008648	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	134558815	PW2017tail	colon	sgMsh2	134558815	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	51	0	0	NA	exonic	Syna	nonsynonymous SNV	Syna:NM_001013751:exon1:c.C1279A:p.L427M	5qG2	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.328308208	3	0.9814664	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr5	137735064	PW2017tail	colon	sgMsh2	137735064	-	C	Insertion	Mutect2;Strelka2;Vardict	3	0.246	34	0	0	NA	exonic	Nyap1	frameshift insertion	"Nyap1:NM_175521:exon3:c.1705dupG:p.V569Gfs*3,Nyap1:NM_001347505:exon4:c.1705dupG:p.V569Gfs*3"	5qG2	chr5-3673201-150769641	2	1	1	0.597	2	NON-ABERRANT	1	0.824120603	NA	NA	CAC	frameshift	C	5	CCCCC	1
PW2020T2	chr6	4528351	PW2017tail	colon	sgMsh2	4528351	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.456	63	0	0	NA	exonic	Col1a2	nonsynonymous SNV	Col1a2:NM_007743:exon32:c.G1927A:p.G643R	6qA1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.763819095	2	0.6945231	TGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	15770332	PW2017tail	colon	sgMsh2	15770332	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.281	104	0	0	NA	exonic	Mdfic	synonymous SNV	Mdfic:NM_175088:exon4:c.C336T:p.H112H	6qA1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.941373534	1	0.9351115	ACG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	24626825	PW2017tail	colon	sgMsh2	24626825	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	184	0	0	NA	exonic	Wasl	nonsynonymous SNV	Wasl:NM_028459:exon6:c.T489A:p.N163K	6qA3.1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.16080402	3	1	GAT	nonsynonymous	T	5	TTTTT	NA
PW2020T2	chr6	48620732	PW2017tail	colon	sgMsh2	48620732	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	83	0	0	NA	exonic	Zfp775	nonsynonymous SNV	Zfp775:NM_173429:exon3:c.A1539T:p.Q513H	6qB2.3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.167504188	3	4.22E-08	AAA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	66553717	PW2017tail	colon	sgMsh2	66553717	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.285	323	0	0	NA	exonic	Vmn1r32	frameshift deletion	Vmn1r32:NM_134170:exon3:c.74delT:p.F25Sfs*4	6qC1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.954773869	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr6	81946562	PW2017tail	colon	sgMsh2	81946562	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.151	143	0	0	NA	exonic	Gcfc2	frameshift deletion	Gcfc2:NM_177884:exon11:c.1606delA:p.I538Sfs*17	6qC3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.505862647	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW2020T2	chr6	90559322	PW2017tail	colon	sgMsh2	90559322	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	74	0	0	NA	exonic	Aldh1l1	nonsynonymous SNV	"Aldh1l1:NM_001356412:exon3:c.G208A:p.V70M,Aldh1l1:NM_027406:exon3:c.G208A:p.V70M"	6qD1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.381909548	3	0.9427402	CGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	98013676	PW2017tail	colon	sgMsh2	98013676	C	T	SNV	Mutect2;Vardict	2	0.038	122	0	0	NA	exonic	Mitf	nonsynonymous SNV	"Mitf:NM_008601:exon8:c.C718T:p.R240W,Mitf:NM_001113198:exon9:c.C1039T:p.R347W,Mitf:NM_001178049:exon9:c.C991T:p.R331W"	6qD3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.127303183	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	113314906	PW2017tail	colon	sgMsh2	113314906	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.247	190	0	0	NA	exonic	Brpf1	synonymous SNV	"Brpf1:NM_001282126:exon3:c.C912T:p.Y304Y,Brpf1:NM_001282127:exon3:c.C912T:p.Y304Y,Brpf1:NM_001282128:exon3:c.C912T:p.Y304Y,Brpf1:NM_030178:exon3:c.C912T:p.Y304Y"	6qE3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.827470687	2	0.5347337	ACG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	115620233	PW2017tail	colon	sgMsh2	115620233	C	T	SNV	Mutect2;Vardict	2	0.031	175	0	0	NA	exonic	Raf1	synonymous SNV	"Raf1:NM_001356334:exon14:c.G1512A:p.Q504Q,Raf1:NM_029780:exon14:c.G1512A:p.Q504Q,Raf1:NM_001356333:exon15:c.G1572A:p.Q524Q"	6qE3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.103852596	3	1	GCT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	117871588	PW2017tail	colon	sgMsh2	117871588	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	78	0	0	NA	exonic	Zfp239	stopgain	"Zfp239:NM_001001792:exon4:c.G286T:p.G96X,Zfp239:NM_008616:exon4:c.G286T:p.G96X,Zfp239:NM_001360938:exon5:c.G286T:p.G96X"	6qF1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9558247	CGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	120876227	PW2017tail	colon	sgMsh2	120876227	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	166	0	0	NA	exonic	Bcl2l13	nonsynonymous SNV	Bcl2l13:NM_153516:exon6:c.C472A:p.Q158K	6qF1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.358458961	3	0.9999349	ACA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	123335980	PW2017tail	colon	sgMsh2	123335980	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.025	469	0	0	NA	exonic	Vmn2r19	nonsynonymous SNV	Vmn2r19:NM_001104632:exon6:c.G2008A:p.V670I	6qF2	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.083752094	3	1	TGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	124819436	PW2017tail	colon	sgMsh2	124819436	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	134	0	0	NA	exonic	Usp5	nonsynonymous SNV	"Usp5:NM_001326594:exon14:c.G1699A:p.D567N,Usp5:NM_013700:exon14:c.G1699A:p.D567N"	6qF2	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9942188	TCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	125642528	PW2017tail	colon	sgMsh2	125642528	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.105	121	0	0	NA	exonic	Vwf	frameshift deletion	Vwf:NM_011708:exon28:c.4168delC:p.P1391Hfs*13	6qF3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.351758794	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW2020T2	chr6	129537559	PW2017tail	colon	sgMsh2	129537559	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.47	128	0	0	NA	exonic	Gabarapl1	synonymous SNV	Gabarapl1:NM_020590:exon2:c.C159T:p.S53S	6qF3	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.787269682	2	0.766372	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	132909833	PW2017tail	colon	sgMsh2	132909833	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	209	0	0	NA	exonic	Tas2r125	nonsynonymous SNV	Tas2r125:NM_207027:exon1:c.G183T:p.W61C	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.817420436	2	0.6555129	GGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	135923004	PW2017tail	colon	sgMsh2	135923004	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.107	57	0	0	NA	exonic	Grin2b	nonsynonymous SNV	"Grin2b:NM_001363750:exon5:c.T878C:p.V293A,Grin2b:NM_008171:exon5:c.T878C:p.V293A"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.358458961	3	0.9582506	CAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136328779	PW2017tail	colon	sgMsh2	136328779	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.385	222	0	0	NA	exonic	Eif4a3l1	synonymous SNV	Eif4a3l1:NM_001142734:exon2:c.C237T:p.I79I	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.644891122	2	0.999908	TCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136400790	PW2017tail	colon	sgMsh2	136400790	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	277	0	0	NA	exonic	E330021D16Rik	synonymous SNV	E330021D16Rik:NM_001201390:exon2:c.T1041C:p.A347A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.760469012	2	0.9885162	TAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136560153	PW2017tail	colon	sgMsh2	136560153	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.524	218	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon2:c.G383C:p.G128A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9997406	GGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136560473	PW2017tail	colon	sgMsh2	136560473	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	101	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon2:c.A703G:p.S235G	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9806551	TAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136561210	PW2017tail	colon	sgMsh2	136561210	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.593	94	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon2:c.C1440T:p.L480L	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9750758	TCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136565021	PW2017tail	colon	sgMsh2	136565021	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	62	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon4:c.G1752A:p.E584E	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9228805	AGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136565132	PW2017tail	colon	sgMsh2	136565132	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	103	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon4:c.T1863C:p.A621A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.817420436	2	0.5553136	CTA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136566728	PW2017tail	colon	sgMsh2	136566728	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	166	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon5:c.T1974A:p.T658T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9982245	CTC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136566764	PW2017tail	colon	sgMsh2	136566764	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.483	139	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon5:c.G2010A:p.K670K	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.809045226	2	0.6517117	AGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136587259	PW2017tail	colon	sgMsh2	136587259	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.371	105	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon9:c.G2475A:p.V825V	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.621440536	2	0.992232	TGA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136587493	PW2017tail	colon	sgMsh2	136587493	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.478	145	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon9:c.C2709G:p.T903T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.800670017	2	0.7179541	CCC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136587502	PW2017tail	colon	sgMsh2	136587502	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	148	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon9:c.C2718A:p.V906V	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9965488	TCC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136593078	PW2017tail	colon	sgMsh2	136593078	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.512	136	0	0	NA	exonic	Atf7ip	nonsynonymous SNV	Atf7ip:NM_019426:exon10:c.A2902G:p.T968A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9946291	TAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136599678	PW2017tail	colon	sgMsh2	136599678	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	240	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon12:c.A3078G:p.S1026S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.814070352	2	0.7205213	CAT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136603307	PW2017tail	colon	sgMsh2	136603307	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	173	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon13:c.A3228G:p.T1076T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.649916248	2	0.9990945	CAC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136612247	PW2017tail	colon	sgMsh2	136612247	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	185	0	0	NA	exonic	Plbd1	nonsynonymous SNV	Plbd1:NM_025806:exon11:c.C1584A:p.D528E	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.824120603	2	0.5670227	TGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136617320	PW2017tail	colon	sgMsh2	136617320	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.481	146	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon7:c.A930G:p.K310K	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.805695142	2	0.6851102	TTT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136617338	PW2017tail	colon	sgMsh2	136617338	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	134	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon7:c.A912C:p.T304T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.824120603	2	0.5358827	TTG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136635504	PW2017tail	colon	sgMsh2	136635504	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	177	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon5:c.T690C:p.S230S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.658291457	2	0.9989306	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136641174	PW2017tail	colon	sgMsh2	136641174	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.358	199	0	0	NA	exonic	Plbd1	nonsynonymous SNV	Plbd1:NM_025806:exon3:c.T379A:p.F127I	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.999476	AAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136641193	PW2017tail	colon	sgMsh2	136641193	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.349	186	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon3:c.G360A:p.T120T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9991524	TCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136651765	PW2017tail	colon	sgMsh2	136651765	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	52	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon2:c.T304C:p.L102L	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.752093802	2	0.6861434	AAA	synonymous	AGCC	9	AGCCAGCCA	NA
PW2020T2	chr6	136651913	PW2017tail	colon	sgMsh2	136651913	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.49	51	0	0	NA	exonic	Plbd1	synonymous SNV	Plbd1:NM_025806:exon2:c.G156C:p.S52S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.820770519	1	8.87E-08	TCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136697928	PW2017tail	colon	sgMsh2	136697928	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.492	131	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon26:c.C3084T:p.Y1028Y,Gucy2c:NM_001127318:exon27:c.C3156T:p.Y1052Y"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.824120603	2	0.5340397	TGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136698024	PW2017tail	colon	sgMsh2	136698024	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.474	84	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon26:c.T2988C:p.R996R,Gucy2c:NM_001127318:exon27:c.T3060C:p.R1020R"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.793969849	2	0.6431147	GAC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136699538	PW2017tail	colon	sgMsh2	136699538	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.388	78	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon25:c.G2910A:p.E970E,Gucy2c:NM_001127318:exon26:c.G2982A:p.E994E"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.649916248	2	0.9550422	TCT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136704310	PW2017tail	colon	sgMsh2	136704310	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	105	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon23:c.G2703C:p.G901G,Gucy2c:NM_001127318:exon24:c.G2775C:p.G925G"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9832729	GCC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136709716	PW2017tail	colon	sgMsh2	136709716	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.329	69	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon21:c.G2448A:p.T816T,Gucy2c:NM_001127318:exon22:c.G2520A:p.T840T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9394178	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136720704	PW2017tail	colon	sgMsh2	136720704	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.365	89	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_145067:exon17:c.T1968C:p.F656F,Gucy2c:NM_001127318:exon18:c.T2040C:p.F680F"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.611390285	2	0.9863859	AAA	synonymous	A	5	AAAAA	NA
PW2020T2	chr6	136728373	PW2017tail	colon	sgMsh2	136728373	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.546	158	0	0	NA	exonic	Gucy2c	synonymous SNV	Gucy2c:NM_001127318:exon14:c.C1563T:p.S521S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.997614	CGC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136737390	PW2017tail	colon	sgMsh2	136737390	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	198	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_001127318:exon12:c.G1437A:p.L479L,Gucy2c:NM_145067:exon12:c.G1437A:p.L479L"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.780569514	2	0.09641092	CCA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136740618	PW2017tail	colon	sgMsh2	136740618	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	79	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_001127318:exon11:c.C1356T:p.L452L,Gucy2c:NM_145067:exon11:c.C1356T:p.L452L"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9573616	CGA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136744007	PW2017tail	colon	sgMsh2	136744007	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.541	169	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_001127318:exon10:c.T1191C:p.Y397Y,Gucy2c:NM_145067:exon10:c.T1191C:p.Y397Y"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9984108	CAT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136781577	PW2017tail	colon	sgMsh2	136781577	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.387	57	0	0	NA	exonic	Gucy2c	synonymous SNV	"Gucy2c:NM_001127318:exon1:c.G30A:p.R10R,Gucy2c:NM_145067:exon1:c.G30A:p.R10R"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.648241206	2	0.09935609	ACC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136804134	PW2017tail	colon	sgMsh2	136804134	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.75	144	0	0	NA	exonic	H4f16	synonymous SNV	H4f16:NM_175652:exon1:c.T246C:p.V82V	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9960002	TAA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136804164	PW2017tail	colon	sgMsh2	136804164	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	152	0	0	NA	exonic	H4f16	synonymous SNV	H4f16:NM_175652:exon1:c.C216A:p.T72T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9970224	AGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136808474	PW2017tail	colon	sgMsh2	136808474	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.577	125	0	0	NA	exonic	H2aj	synonymous SNV	H2aj:NM_177688:exon1:c.C135T:p.G45G	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9919515	GCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136808585	PW2017tail	colon	sgMsh2	136808585	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.539	295	0	0	NA	exonic	H2aj	synonymous SNV	H2aj:NM_177688:exon1:c.T246C:p.R82R	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.999985	GTC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136817949	PW2017tail	colon	sgMsh2	136817949	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	182	0	0	NA	exonic	Wbp11	synonymous SNV	Wbp11:NM_021714:exon9:c.C996T:p.A332A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9990172	TGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136821217	PW2017tail	colon	sgMsh2	136821217	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	23	0	0	NA	exonic	Wbp11	synonymous SNV	Wbp11:NM_021714:exon7:c.T681G:p.P227P	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.737018425	2	0.5780214	GAG	synonymous	G	5	GGGGG	NA
PW2020T2	chr6	136821253	PW2017tail	colon	sgMsh2	136821253	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.375	31	0	0	NA	exonic	Wbp11	synonymous SNV	Wbp11:NM_021714:exon7:c.C645T:p.Y215Y	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.628140704	2	0.7734587	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136840191	PW2017tail	colon	sgMsh2	136840191	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	114	0	0	NA	exonic	BC049715	nonsynonymous SNV	BC049715:NM_178776:exon3:c.T428C:p.M143T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.663316583	2	0.9853702	ATG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136840275	PW2017tail	colon	sgMsh2	136840275	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.409	122	0	0	NA	exonic	BC049715	nonsynonymous SNV	BC049715:NM_178776:exon3:c.C512T:p.T171I	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.685092127	2	0.9805849	ACC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136840479	PW2017tail	colon	sgMsh2	136840479	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	124	0	0	NA	exonic	BC049715	nonsynonymous SNV	BC049715:NM_178776:exon3:c.T716C:p.F239S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.659966499	2	0.9908872	TTT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136854515	PW2017tail	colon	sgMsh2	136854515	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	108	0	0	NA	exonic	Art4	synonymous SNV	Art4:NM_026639:exon2:c.T627C:p.T209T	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9850047	AAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136854621	PW2017tail	colon	sgMsh2	136854621	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.515	157	0	0	NA	exonic	Art4	nonsynonymous SNV	Art4:NM_026639:exon2:c.G521A:p.G174E	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9975242	TCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136855027	PW2017tail	colon	sgMsh2	136855027	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.504	164	0	0	NA	exonic	Art4	nonsynonymous SNV	Art4:NM_026639:exon2:c.G115A:p.D39N	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9980883	TCA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136857168	PW2017tail	colon	sgMsh2	136857168	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.491	133	0	0	NA	exonic	Art4	nonsynonymous SNV	Art4:NM_026639:exon1:c.A76G:p.T26A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.822445561	2	0.5476856	GTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136872692	PW2017tail	colon	sgMsh2	136872692	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	54	0	0	NA	exonic	Mgp	synonymous SNV	Mgp:NM_008597:exon4:c.C267T:p.N89N	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.8989862	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136872701	PW2017tail	colon	sgMsh2	136872701	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.569	50	0	0	NA	exonic	Mgp	synonymous SNV	Mgp:NM_008597:exon4:c.C258T:p.Y86Y	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.8847238	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136873173	PW2017tail	colon	sgMsh2	136873173	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	79	0	0	NA	exonic	Mgp	nonsynonymous SNV	Mgp:NM_008597:exon3:c.A164T:p.Q55L	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.790619765	2	0.6461444	TTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136919892	PW2017tail	colon	sgMsh2	136919892	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.505	113	0	0	NA	exonic	Erp27	nonsynonymous SNV	Erp27:NM_026983:exon3:c.A311G:p.N104S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9875067	GTT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	136929687	PW2017tail	colon	sgMsh2	136929687	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.419	106	0	0	NA	exonic	Arhgdib	synonymous SNV	"Arhgdib:NM_001301308:exon3:c.C15G:p.G5G,Arhgdib:NM_001301309:exon3:c.C15G:p.G5G,Arhgdib:NM_001301301:exon4:c.C264G:p.G88G,Arhgdib:NM_001301303:exon4:c.C264G:p.G88G,Arhgdib:NM_001301305:exon4:c.C264G:p.G88G,Arhgdib:NM_007486:exon4:c.C264G:p.G88G"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.701842546	2	0.9518719	CGC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136932327	PW2017tail	colon	sgMsh2	136932327	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	137	0	0	NA	exonic	Arhgdib	synonymous SNV	"Arhgdib:NM_001301301:exon3:c.C195T:p.N65N,Arhgdib:NM_001301303:exon3:c.C195T:p.N65N,Arhgdib:NM_001301305:exon3:c.C195T:p.N65N,Arhgdib:NM_007486:exon3:c.C195T:p.N65N"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.810720268	2	0.6372259	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	136933717	PW2017tail	colon	sgMsh2	136933717	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.457	76	0	0	NA	exonic	Arhgdib	synonymous SNV	"Arhgdib:NM_001301301:exon2:c.C45T:p.D15D,Arhgdib:NM_001301303:exon2:c.C45T:p.D15D,Arhgdib:NM_001301305:exon2:c.C45T:p.D15D,Arhgdib:NM_007486:exon2:c.C45T:p.D15D"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.765494137	2	0.7312291	CGT	synonymous	GTC	9	GTCGTCGTC	NA
PW2020T2	chr6	137056223	PW2017tail	colon	sgMsh2	137056223	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.497	161	0	0	NA	exonic	Rerg	synonymous SNV	"Rerg:NM_001164214:exon4:c.A453G:p.R151R,Rerg:NM_001164212:exon5:c.A510G:p.R170R,Rerg:NM_181988:exon5:c.A510G:p.R170R"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.832495812	1	0.5230526	TTC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137056280	PW2017tail	colon	sgMsh2	137056280	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	131	0	0	NA	exonic	Rerg	synonymous SNV	"Rerg:NM_001164214:exon4:c.G396C:p.T132T,Rerg:NM_001164212:exon5:c.G453C:p.T151T,Rerg:NM_181988:exon5:c.G453C:p.T151T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.788944724	2	0.763308	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137056412	PW2017tail	colon	sgMsh2	137056412	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.464	144	0	0	NA	exonic	Rerg	synonymous SNV	"Rerg:NM_001164214:exon4:c.A264G:p.K88K,Rerg:NM_001164212:exon5:c.A321G:p.K107K,Rerg:NM_181988:exon5:c.A321G:p.K107K"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.77721943	2	0.8435301	GTT	synonymous	T	5	TTTTT	NA
PW2020T2	chr6	137067012	PW2017tail	colon	sgMsh2	137067012	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	209	0	0	NA	exonic	Rerg	synonymous SNV	"Rerg:NM_001164212:exon3:c.C105T:p.Y35Y,Rerg:NM_181988:exon3:c.C105T:p.Y35Y"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.770519263	2	0.9450101	CGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137164951	PW2017tail	colon	sgMsh2	137164951	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.461	87	0	0	NA	exonic	Rerg	synonymous SNV	"Rerg:NM_001164212:exon2:c.G45A:p.A15A,Rerg:NM_001164214:exon2:c.G45A:p.A15A,Rerg:NM_181988:exon2:c.G45A:p.A15A"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.772194305	2	0.7392249	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137368083	PW2017tail	colon	sgMsh2	137368083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	124	0	0	NA	exonic	Ptpro	nonsynonymous SNV	"Ptpro:NM_001164401:exon2:c.C86T:p.T29M,Ptpro:NM_011216:exon2:c.C86T:p.T29M"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9916505	ACG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	137378084	PW2017tail	colon	sgMsh2	137378084	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.507	172	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon4:c.G588A:p.S196S,Ptpro:NM_011216:exon4:c.G588A:p.S196S"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9985776	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137380409	PW2017tail	colon	sgMsh2	137380409	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.499	83	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon5:c.A897G:p.T299T,Ptpro:NM_011216:exon5:c.A897G:p.T299T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.835845896	1	0.5499942	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137380427	PW2017tail	colon	sgMsh2	137380427	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	77	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon5:c.A915T:p.S305S,Ptpro:NM_011216:exon5:c.A915T:p.S305S"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.780569514	2	0.680461	CAC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137380532	PW2017tail	colon	sgMsh2	137380532	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.454	85	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon5:c.A1020G:p.T340T,Ptpro:NM_011216:exon5:c.A1020G:p.T340T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.760469012	2	0.7751187	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137380565	PW2017tail	colon	sgMsh2	137380565	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.425	61	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon5:c.C1053T:p.F351F,Ptpro:NM_011216:exon5:c.C1053T:p.F351F"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.711892797	2	0.8176421	TCC	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137382660	PW2017tail	colon	sgMsh2	137382660	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.556	59	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon6:c.A1227G:p.T409T,Ptpro:NM_011216:exon6:c.A1227G:p.T409T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9145963	CAA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137386243	PW2017tail	colon	sgMsh2	137386243	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	107	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon7:c.C1374G:p.T458T,Ptpro:NM_011216:exon7:c.C1374G:p.T458T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.745393635	2	0.8774279	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137386261	PW2017tail	colon	sgMsh2	137386261	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.439	106	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon7:c.A1392G:p.T464T,Ptpro:NM_011216:exon7:c.A1392G:p.T464T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.735343384	2	0.8991053	CAT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137386358	PW2017tail	colon	sgMsh2	137386358	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.482	63	0	0	NA	exonic	Ptpro	nonsynonymous SNV	"Ptpro:NM_001164401:exon7:c.A1489T:p.T497S,Ptpro:NM_011216:exon7:c.A1489T:p.T497S"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.807370184	2	6.18E-09	TAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	137393534	PW2017tail	colon	sgMsh2	137393534	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.536	136	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon9:c.A1632G:p.K544K,Ptpro:NM_011216:exon9:c.A1632G:p.K544K"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9946291	AAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137393537	PW2017tail	colon	sgMsh2	137393537	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.543	139	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon9:c.T1635C:p.D545D,Ptpro:NM_011216:exon9:c.T1635C:p.D545D"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9951909	ATT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137393690	PW2017tail	colon	sgMsh2	137393690	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.543	147	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon9:c.A1788T:p.T596T,Ptpro:NM_011216:exon9:c.A1788T:p.T596T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9964191	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137414268	PW2017tail	colon	sgMsh2	137414268	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.485	61	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164401:exon14:c.A2385G:p.P795P,Ptpro:NM_011216:exon14:c.A2385G:p.P795P"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.81239531	2	8.01E-09	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137418233	PW2017tail	colon	sgMsh2	137418233	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.472	141	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164402:exon5:c.T150C:p.V50V,Ptpro:NM_001164403:exon5:c.T150C:p.V50V,Ptpro:NM_001164401:exon16:c.T2613C:p.V871V,Ptpro:NM_011216:exon16:c.T2613C:p.V871V"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.790619765	2	0.772335	TTA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137442652	PW2017tail	colon	sgMsh2	137442652	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.521	50	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164403:exon9:c.T411C:p.F137F,Ptpro:NM_001164402:exon10:c.T495C:p.F165F,Ptpro:NM_001164401:exon20:c.T2874C:p.F958F,Ptpro:NM_011216:exon21:c.T2958C:p.F986F"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.8847238	TTA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137443984	PW2017tail	colon	sgMsh2	137443984	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.488	96	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164403:exon11:c.G705A:p.E235E,Ptpro:NM_001164402:exon12:c.G789A:p.E263E,Ptpro:NM_001164401:exon22:c.G3168A:p.E1056E,Ptpro:NM_011216:exon23:c.G3252A:p.E1084E"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.817420436	2	0.5484349	AGG	synonymous	GAG	17	GAGGAAGAGGAGGAGGA	NA
PW2020T2	chr6	137449975	PW2017tail	colon	sgMsh2	137449975	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	95	0	0	NA	exonic	Ptpro	synonymous SNV	"Ptpro:NM_001164403:exon12:c.A843G:p.T281T,Ptpro:NM_001164402:exon13:c.A927G:p.T309T,Ptpro:NM_001164401:exon23:c.A3306G:p.T1102T,Ptpro:NM_011216:exon24:c.A3390G:p.T1130T"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.798994975	2	0.6418389	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137483547	PW2017tail	colon	sgMsh2	137483547	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	62	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon12:c.C1437T:p.N479N,Eps8:NM_001271587:exon19:c.C2295T:p.N765N,Eps8:NM_001271588:exon19:c.C2217T:p.N739N,Eps8:NM_001271595:exon19:c.C2217T:p.N739N,Eps8:NM_007945:exon20:c.C2217T:p.N739N"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9228805	GGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137483652	PW2017tail	colon	sgMsh2	137483652	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.522	75	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon12:c.A1332G:p.A444A,Eps8:NM_001271587:exon19:c.A2190G:p.A730A,Eps8:NM_001271588:exon19:c.A2112G:p.A704A,Eps8:NM_001271595:exon19:c.A2112G:p.A704A,Eps8:NM_007945:exon20:c.A2112G:p.A704A"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9508911	GTG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137483655	PW2017tail	colon	sgMsh2	137483655	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.514	77	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon12:c.T1329C:p.A443A,Eps8:NM_001271587:exon19:c.T2187C:p.A729A,Eps8:NM_001271588:exon19:c.T2109C:p.A703A,Eps8:NM_001271595:exon19:c.T2109C:p.A703A,Eps8:NM_007945:exon20:c.T2109C:p.A703A"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9542351	CAG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137490304	PW2017tail	colon	sgMsh2	137490305	TG	CT	DBS	Mutect2;Vardict	2	0.5	73	0	0	NA	exonic	Eps8	nonframeshift substitution	"Eps8:NM_001271589:exon11:c.1173_1174AG:p.N392D,Eps8:NM_001271587:exon18:c.2031_2032AG:p.N678D,Eps8:NM_001271588:exon18:c.1953_1954AG:p.N652D,Eps8:NM_001271595:exon18:c.1953_1954AG:p.N652D,Eps8:NM_007945:exon19:c.1953_1954AG:p.N652D"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.837520938	NA	NA	TTG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	137490311	PW2017tail	colon	sgMsh2	137490311	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.485	69	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon11:c.C1167T:p.V389V,Eps8:NM_001271587:exon18:c.C2025T:p.V675V,Eps8:NM_001271588:exon18:c.C1947T:p.V649V,Eps8:NM_001271595:exon18:c.C1947T:p.V649V,Eps8:NM_007945:exon19:c.C1947T:p.V649V"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.81239531	2	0.5411334	GGA	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137499606	PW2017tail	colon	sgMsh2	137499606	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.466	120	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon10:c.C1014T:p.D338D,Eps8:NM_001271587:exon17:c.C1872T:p.D624D,Eps8:NM_001271588:exon17:c.C1794T:p.D598D,Eps8:NM_001271595:exon17:c.C1794T:p.D598D,Eps8:NM_007945:exon18:c.C1794T:p.D598D"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.780569514	2	0.7828757	GGT	synonymous	G	5	GGGGG	NA
PW2020T2	chr6	137499630	PW2017tail	colon	sgMsh2	137499630	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	112	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon10:c.G990A:p.P330P,Eps8:NM_001271587:exon17:c.G1848A:p.P616P,Eps8:NM_001271588:exon17:c.G1770A:p.P590P,Eps8:NM_001271595:exon17:c.G1770A:p.P590P,Eps8:NM_007945:exon18:c.G1770A:p.P590P"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.737018425	2	0.09282606	CCG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137509173	PW2017tail	colon	sgMsh2	137509173	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	103	0	0	NA	exonic	Eps8	nonsynonymous SNV	"Eps8:NM_001271589:exon7:c.C560T:p.A187V,Eps8:NM_001271587:exon14:c.C1418T:p.A473V,Eps8:NM_001271588:exon14:c.C1340T:p.A447V,Eps8:NM_001271595:exon14:c.C1340T:p.A447V,Eps8:NM_007945:exon15:c.C1340T:p.A447V"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.819095477	2	0.5457293	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	137512274	PW2017tail	colon	sgMsh2	137512274	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	81	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon6:c.C345T:p.P115P,Eps8:NM_001271587:exon13:c.C1203T:p.P401P,Eps8:NM_001271588:exon13:c.C1125T:p.P375P,Eps8:NM_001271595:exon13:c.C1125T:p.P375P,Eps8:NM_007945:exon14:c.C1125T:p.P375P"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.730318258	2	0.8479608	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137514748	PW2017tail	colon	sgMsh2	137514748	T	C	SNV	Mutect2;Strelka2;MuSe	3	0.5	58	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon4:c.A201G:p.E67E,Eps8:NM_001271587:exon11:c.A1059G:p.E353E,Eps8:NM_001271588:exon11:c.A981G:p.E327E,Eps8:NM_001271595:exon11:c.A981G:p.E327E,Eps8:NM_007945:exon12:c.A981G:p.E327E"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.837520938	1	5.57E-09	ATT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137514751	PW2017tail	colon	sgMsh2	137514751	A	G	SNV	Mutect2;Strelka2;MuSe	3	0.491	57	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271589:exon4:c.T198C:p.D66D,Eps8:NM_001271587:exon11:c.T1056C:p.D352D,Eps8:NM_001271588:exon11:c.T978C:p.D326D,Eps8:NM_001271595:exon11:c.T978C:p.D326D,Eps8:NM_007945:exon12:c.T978C:p.D326D"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.822445561	1	0.5062311	CAT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137527184	PW2017tail	colon	sgMsh2	137527184	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.447	212	0	0	NA	exonic	Eps8	synonymous SNV	"Eps8:NM_001271587:exon6:c.A498G:p.V166V,Eps8:NM_001271588:exon6:c.A420G:p.V140V,Eps8:NM_001271595:exon6:c.A420G:p.V140V,Eps8:NM_007945:exon7:c.A420G:p.V140V"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.748743719	2	0.9806204	GTA	synonymous	TGCA	10	TGCATGCATG	NA
PW2020T2	chr6	137742042	PW2017tail	colon	sgMsh2	137742042	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.486	163	0	0	NA	exonic	Strap	synonymous SNV	Strap:NM_011499:exon6:c.T591C:p.I197I	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.814070352	2	0.641797	TTT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137778161	PW2017tail	colon	sgMsh2	137778161	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.477	43	0	0	NA	exonic	Dera	synonymous SNV	Dera:NM_172733:exon2:c.G69A:p.A23A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.798994975	2	0.5403173	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	137987465	PW2017tail	colon	sgMsh2	137987465	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	155	0	0	NA	exonic	Slc15a5	synonymous SNV	Slc15a5:NM_177787:exon8:c.C1461T:p.N487N	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.646566164	2	0.998298	TGT	synonymous	NA	NA	NA	NA
PW2020T2	chr6	138012160	PW2017tail	colon	sgMsh2	138012160	-	GCTCCTCTGAAG	Insertion	Strelka2;Vardict	2	0.283	106	0	0	NA	exonic	Slc15a5	nonframeshift insertion	Slc15a5:NM_177787:exon7:c.1358_1359insCTTCAGAGGAGC:p.A453_S454insFRGA	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.948073702	NA	NA	AAG	inframe	NA	NA	NA	12
PW2020T2	chr6	138018082	PW2017tail	colon	sgMsh2	138018082	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	54	0	0	NA	exonic	Slc15a5	synonymous SNV	Slc15a5:NM_177787:exon6:c.A1164C:p.A388A	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.75041876	2	9.67E-07	ATG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	138036983	PW2017tail	colon	sgMsh2	138036983	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	156	0	0	NA	exonic	Slc15a5	synonymous SNV	Slc15a5:NM_177787:exon5:c.G1053A:p.P351P	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.733668342	2	0.966625	ACG	synonymous	NA	NA	NA	NA
PW2020T2	chr6	138043412	PW2017tail	colon	sgMsh2	138043412	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	162	0	0	NA	exonic	Slc15a5	nonsynonymous SNV	Slc15a5:NM_177787:exon4:c.T922C:p.F308L	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.730318258	2	0.9740301	AAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	138043449	PW2017tail	colon	sgMsh2	138043449	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.441	164	0	0	NA	exonic	Slc15a5	nonsynonymous SNV	Slc15a5:NM_177787:exon4:c.C885G:p.D295E	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.738693467	2	0.9665343	TGT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	138141791	PW2017tail	colon	sgMsh2	138141791	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	108	0	0	NA	exonic	Mgst1	nonsynonymous SNV	Mgst1:NM_001347489:exon1:c.A100G:p.R34G	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9850047	AAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	138141881	PW2017tail	colon	sgMsh2	138141881	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.366	92	0	0	NA	exonic	Mgst1	nonsynonymous SNV	Mgst1:NM_001347489:exon1:c.G190A:p.G64S	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.613065327	2	0.9878611	TGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr6	138153535	PW2017tail	colon	sgMsh2	138153540	TTGCTA	-	Deletion	Strelka2;Vardict	2	0.4397	141	0	0	NA	exonic	Mgst1	nonframeshift deletion	Mgst1:NM_001361307:exon4:c.261_266del:p.C88_Y89del	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.736515913	NA	NA	GTT	inframe	NA	NA	NA	-6
PW2020T2	chr6	138366002	PW2017tail	colon	sgMsh2	138366002	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	35	0	0	NA	exonic	Lmo3	synonymous SNV	"Lmo3:NM_001356305:exon4:c.T378C:p.L126L,Lmo3:NM_001356306:exon4:c.T378C:p.L126L,Lmo3:NM_001356307:exon4:c.T411C:p.L137L,Lmo3:NM_207222:exon5:c.T378C:p.L126L"	6qG1	chr6-3483595-149512217	2	1	1	0.597	2	NON-ABERRANT	1	0.710217755	2	0.6885544	AAA	synonymous	NA	NA	NA	NA
PW2020T2	chr7	4010477	PW2017tail	colon	sgMsh2	4010477	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	250	0	0	NA	exonic	Lair1	nonsynonymous SNV	"Lair1:NM_001302676:exon4:c.A221T:p.E74V,Lair1:NM_001302677:exon4:c.A140T:p.E47V,Lair1:NM_001302675:exon5:c.A470T:p.E157V,Lair1:NM_001302683:exon5:c.A242T:p.E81V,Lair1:NM_178611:exon5:c.A257T:p.E86V,Lair1:NM_001113474:exon6:c.A587T:p.E196V,Lair1:NM_001302681:exon6:c.A572T:p.E191V,Lair1:NM_001302682:exon6:c.A572T:p.E191V"	7qA1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.499162479	2	0.9999969	CTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	4758294	PW2017tail	colon	sgMsh2	4758294	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	171	0	0	NA	exonic	Fam71e2	nonsynonymous SNV	Fam71e2:NM_172895:exon9:c.C1418A:p.P473H	7qA1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.224455611	3	1.00E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	10159496	PW2017tail	colon	sgMsh2	10159496	C	T	SNV	Mutect2;Vardict	2	0.027	424	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon6:c.G1715A:p.C572Y	7qA1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.090452261	3	1	GCA	nonsynonymous	TGCA	9	TGCATGCAT	NA
PW2020T2	chr7	18726741	PW2017tail	colon	sgMsh2	18726741	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.296	510	0	0	NA	exonic	Psg22	nonsynonymous SNV	Psg22:NM_001004152:exon5:c.G1177A:p.D393N	7qA3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.991624791	1	1.47E-08	GGA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	28989370	PW2017tail	colon	sgMsh2	28989370	G	A	SNV	Mutect2;Vardict	2	0.093	49	0	0	NA	exonic	Map4k1	nonsynonymous SNV	"Map4k1:NM_008279:exon12:c.G845A:p.G282D,Map4k1:NM_001355054:exon13:c.G707A:p.G236D"	7qB1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.311557789	3	0.9883524	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	30586850	PW2017tail	colon	sgMsh2	30586850	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.234	102	0	0	NA	exonic	Kmt2b	frameshift deletion	"Kmt2b:NM_001290573:exon3:c.616delC:p.R206Gfs*33,Kmt2b:NM_029274:exon3:c.616delC:p.R206Gfs*33"	7qB1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.783919598	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW2020T2	chr7	30752822	PW2017tail	colon	sgMsh2	30752822	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	347	0	0	NA	exonic	Sbsn	nonsynonymous SNV	Sbsn:NM_172205:exon1:c.T1261C:p.F421L	7qB1	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.860971524	1	0.09965439	GTT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	42788415	PW2017tail	colon	sgMsh2	42788415	A	C	SNV	Mutect2;Vardict	2	0.053	74	0	0	NA	exonic	Vmn2r62	nonsynonymous SNV	Vmn2r62:NM_001105059:exon3:c.T644G:p.I215S	7qB3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.177554439	3	0.9999995	AAT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	86268806	PW2017tail	colon	sgMsh2	86268806	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.128	65	0	0	NA	exonic	Olfr310	frameshift deletion	Olfr310:NM_001011520:exon1:c.982delA:p.T328Lfs*3	7qD3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.42881072	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr7	105741636	PW2017tail	colon	sgMsh2	105741636	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	98	0	0	NA	exonic	Ilk	frameshift deletion	"Ilk:NM_001161724:exon9:c.785delC:p.H264Tfs*31,Ilk:NM_010562:exon9:c.785delC:p.H264Tfs*31"	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.314907873	NA	NA	GCC	frameshift	C	6	CCCCCC	-1
PW2020T2	chr7	107148174	PW2017tail	colon	sgMsh2	107148174	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	254	0	0	NA	exonic	Olfr716	nonsynonymous SNV	Olfr716:NM_146604:exon1:c.A857C:p.N286T	7qE3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.968174204	1	0.9995799	AAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	118730726	PW2017tail	colon	sgMsh2	118730726	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	168	0	0	NA	exonic	Ccp110	nonsynonymous SNV	"Ccp110:NM_001360793:exon12:c.G2735A:p.R912K,Ccp110:NM_001360794:exon12:c.G2738A:p.R913K,Ccp110:NM_182995:exon12:c.G2738A:p.R913K"	7qF2	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.998351	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	127801233	PW2017tail	colon	sgMsh2	127801233	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.355	32	0	0	NA	exonic	Hsd3b7	nonsynonymous SNV	"Hsd3b7:NM_001040684:exon2:c.G72T:p.E24D,Hsd3b7:NM_133943:exon2:c.G153T:p.E51D"	7qF3	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.7976457	AGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	137445065	PW2017tail	colon	sgMsh2	137445065	A	G	SNV	Mutect2;Vardict	2	0.029	280	0	0	NA	exonic	Glrx3	nonsynonymous SNV	Glrx3:NM_023140:exon2:c.A185G:p.H62R	7qF4	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.097152429	3	1	CAC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	140071630	PW2017tail	colon	sgMsh2	140071630	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.334	100	0	0	NA	exonic	Caly	nonsynonymous SNV	"Caly:NM_001190385:exon4:c.C317T:p.A106V,Caly:NM_026769:exon4:c.C317T:p.A106V,Caly:NM_001190386:exon5:c.C317T:p.A106V"	7qF4	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9799402	GGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr7	141843266	PW2017tail	colon	sgMsh2	141843266	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	84	0	0	NA	exonic	Muc5b	synonymous SNV	Muc5b:NM_028801:exon6:c.C675A:p.T225T	7qF5	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.847571189	1	0.6039454	CCC	synonymous	NA	NA	NA	NA
PW2020T2	chr7	141851623	PW2017tail	colon	sgMsh2	141851623	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	185	0	0	NA	exonic	Muc5b	nonsynonymous SNV	Muc5b:NM_028801:exon22:c.T2767C:p.Y923H	7qF5	chr7-4010477-143062472	2	1	1	0.597	2	NON-ABERRANT	1	0.37520938	3	0.9997671	GTA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr8	3429518	PW2017tail	colon	sgMsh2	3429518	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	198	0	0	NA	exonic	Arhgef18	synonymous SNV	"Arhgef18:NM_133962:exon4:c.G201T:p.L67L,Arhgef18:NM_001370668:exon13:c.G1353T:p.L451L"	8qA1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.29480737	3	1.54E-09	TGA	synonymous	NA	NA	NA	NA
PW2020T2	chr8	11656136	PW2017tail	colon	sgMsh2	11656136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.309	141	0	0	NA	exonic	1700016D06Rik	stopgain	1700016D06Rik:NM_024271:exon5:c.397delA:p.M133fs*0	8qA1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	ATT	nonsynonymous	NA	NA	NA	-1
PW2020T2	chr8	13386741	PW2017tail	colon	sgMsh2	13386741	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.36	122	0	0	NA	exonic	Atp4b	nonsynonymous SNV	Atp4b:NM_009724:exon7:c.C770T:p.P257L	8qA1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.603015075	2	0.9979134	GGG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr8	14964211	PW2017tail	colon	sgMsh2	14964211	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	52	0	0	NA	exonic	Arhgef10	nonsynonymous SNV	"Arhgef10:NM_001037736:exon17:c.C1978T:p.H660Y,Arhgef10:NM_172751:exon18:c.C2095T:p.H699Y"	8qA1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.968174204	1	0.8507421	CCA	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr8	25750747	PW2017tail	colon	sgMsh2	25750747	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.323	114	0	0	NA	exonic	Ddhd2	stopgain	"Ddhd2:NM_001361595:exon4:c.457delA:p.I153fs*0,Ddhd2:NM_028102:exon4:c.457delA:p.I153fs*0"	8qA2	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	ATT	nonsynonymous	T	10	TTTTTTTTTT	-1
PW2020T2	chr8	47193976	PW2017tail	colon	sgMsh2	47193976	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	125	0	0	NA	exonic	Stox2	nonsynonymous SNV	"Stox2:NM_001114311:exon3:c.C448T:p.L150F,Stox2:NM_001286376:exon3:c.C448T:p.L150F,Stox2:NM_175162:exon3:c.C262T:p.L88F"	8qB1.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.931323283	1	0.947195	AGG	nonsynonymous	GAGG	11	GAGGGAGGGAG	NA
PW2020T2	chr8	66484129	PW2017tail	colon	sgMsh2	66484129	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.278	318	0	0	NA	exonic	Tma16	frameshift deletion	Tma16:NM_025465:exon2:c.45delA:p.V16Sfs*24	8qB3.1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.931323283	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW2020T2	chr8	72368746	PW2017tail	colon	sgMsh2	72368746	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.027	200	0	0	NA	exonic	Eps15l1	synonymous SNV	"Eps15l1:NM_001289859:exon20:c.T2031C:p.P677P,Eps15l1:NM_007944:exon20:c.T2124C:p.P708P"	8qB3.3	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.090452261	3	1	AAG	synonymous	A	5	AAAAA	NA
PW2020T2	chr8	72725600	PW2017tail	colon	sgMsh2	72725600	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.527	115	0	0	NA	exonic	Sin3b	synonymous SNV	"Sin3b:NM_001113248:exon3:c.C270T:p.I90I,Sin3b:NM_009188:exon3:c.C270T:p.I90I"	8qB3.3	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9883879	TCG	synonymous	NA	NA	NA	NA
PW2020T2	chr8	75051552	PW2017tail	colon	sgMsh2	75051552	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	298	0	0	NA	exonic	Tom1	synonymous SNV	"Tom1:NM_001136259:exon4:c.A261G:p.V87V,Tom1:NM_011622:exon4:c.A261G:p.V87V"	8qC1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.34840871	3	3.41E-09	TAC	synonymous	NA	NA	NA	NA
PW2020T2	chr8	84044936	PW2017tail	colon	sgMsh2	84044936	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.276	29	0	0	NA	exonic	Rln3	synonymous SNV	Rln3:NM_173184:exon1:c.G21A:p.L7L	8qC2	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.924623116	1	0.6834838	GCA	synonymous	CAG	13	CAGCAGCAGCAGC	NA
PW2020T2	chr8	84676196	PW2017tail	colon	sgMsh2	84676196	G	A	SNV	Mutect2;Vardict	2	0.039	103	0	0	NA	exonic	Nacc1	nonsynonymous SNV	Nacc1:NM_025788:exon3:c.C967T:p.R323W	8qC2	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.130653266	3	1.03E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr8	105706616	PW2017tail	colon	sgMsh2	105706616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	123	0	0	NA	exonic	Enkd1	nonsynonymous SNV	Enkd1:NM_198299:exon4:c.C403T:p.R135C	8qD3	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.824120603	2	0.5291208	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr8	109520958	PW2017tail	colon	sgMsh2	109520958	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	89	0	0	NA	exonic	Pmfbp1	synonymous SNV	Pmfbp1:NM_019938:exon7:c.A885G:p.Q295Q	8qD3	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9701594	AAG	synonymous	NA	NA	NA	NA
PW2020T2	chr8	123421140	PW2017tail	colon	sgMsh2	123421140	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	180	0	0	NA	exonic	Tubb3	nonsynonymous SNV	Tubb3:NM_023279:exon4:c.G811A:p.A271T	8qE1	chr8-3167654-127409529	2	1	1	0.597	2	NON-ABERRANT	1	0.693467337	2	0.9960779	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	7449822	PW2017tail	colon	sgMsh2	7449822	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	112	0	0	NA	exonic	Mmp3	nonsynonymous SNV	Mmp3:NM_010809:exon5:c.A705C:p.E235D	9qA1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.170854271	3	1.13E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	21932844	PW2017tail	colon	sgMsh2	21932844	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.157	40	0	0	NA	exonic	Ccdc159	synonymous SNV	"Ccdc159:NM_001164614:exon7:c.C642T:p.G214G,Ccdc159:NM_025977:exon7:c.C618T:p.G206G"	9qA3	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.525963149	2	0.8922041	GCC	synonymous	NA	NA	NA	NA
PW2020T2	chr9	38524048	PW2017tail	colon	sgMsh2	38524048	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.316	371	0	0	NA	exonic	Olfr911-ps1	frameshift deletion	Olfr911-ps1:NM_146873:exon1:c.315delT:p.F107Lfs*8	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW2020T2	chr9	38815805	PW2017tail	colon	sgMsh2	38815805	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.311	267	0	0	NA	exonic	Olfr922	nonsynonymous SNV	Olfr922:NM_146781:exon1:c.C301A:p.L101I	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.9999577	GCT	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	42373179	PW2017tail	colon	sgMsh2	42373179	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.068	178	0	0	NA	exonic	Tecta	frameshift deletion	"Tecta:NM_001324548:exon10:c.2609delA:p.N870Tfs*23,Tecta:NM_009347:exon10:c.2609delA:p.N870Tfs*23,Tecta:NM_001378602:exon11:c.2609delA:p.N870Tfs*23"	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.227805695	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW2020T2	chr9	44111749	PW2017tail	colon	sgMsh2	44111749	G	A	SNV	Mutect2;Vardict	2	0.064	102	0	0	NA	exonic	Rnf26	nonsynonymous SNV	Rnf26:NM_153762:exon1:c.C1201T:p.R401C	9qA5.1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.21440536	3	3.36E-08	CGC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	61409939	PW2017tail	colon	sgMsh2	61409939	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.272	32	0	0	NA	exonic	Tle3	nonsynonymous SNV	"Tle3:NM_001083927:exon13:c.C1094T:p.S365L,Tle3:NM_001083928:exon13:c.C1055T:p.S352L,Tle3:NM_009389:exon13:c.C1064T:p.S355L"	9qB	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.911222781	1	0.6756489	TCG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	91364103	PW2017tail	colon	sgMsh2	91364103	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.403	139	0	0	NA	exonic	Zic1	synonymous SNV	"Zic1:NM_009573:exon1:c.G915A:p.P305P,Zic1:NM_001376941:exon2:c.G915A:p.P305P"	9qE3.2	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.675041876	2	0.9919045	ACG	synonymous	NA	NA	NA	NA
PW2020T2	chr9	97454733	PW2017tail	colon	sgMsh2	97454733	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	83	0	0	NA	exonic	Clstn2	nonsynonymous SNV	Clstn2:NM_022319:exon17:c.G2690A:p.G897D	9qE3.3	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.34840871	3	0.9952052	GCC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	106473149	PW2017tail	colon	sgMsh2	106473149	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.338	42	0	0	NA	exonic	Parp3	nonsynonymous SNV	"Parp3:NM_001311150:exon9:c.A1156G:p.T386A,Parp3:NM_145619:exon9:c.A1141G:p.T381A"	9qF1	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	1	1	0.850917	GTG	nonsynonymous	GTGCC	10	GTGCCGTGCC	NA
PW2020T2	chr9	110592467	PW2017tail	colon	sgMsh2	110592468	AG	-	Deletion	Strelka2;Vardict	2	0.1688	77	0	0	NA	exonic	Setd2	frameshift deletion	Setd2:NM_001081340:exon14:c.6100_6101del:p.D2037Pfs*7	9qF2	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.565494137	NA	NA	TAG	frameshift	AG	11	AGAGAGAGAGA	-2
PW2020T2	chr9	119040530	PW2017tail	colon	sgMsh2	119040530	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.059	96	0	0	NA	exonic	Ctdspl	frameshift deletion	Ctdspl:NM_133710:exon8:c.712delG:p.V238Cfs*7	9qF3	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.197654941	NA	NA	CGT	frameshift	NA	NA	NA	-1
PW2020T2	chr9	119072276	PW2017tail	colon	sgMsh2	119072276	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	153	0	0	NA	exonic	Plcd1	nonsynonymous SNV	"Plcd1:NM_001293648:exon13:c.G2087A:p.R696H,Plcd1:NM_019676:exon13:c.G2009A:p.R670H"	9qF3	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.140703518	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW2020T2	chr9	119622896	PW2017tail	colon	sgMsh2	119622896	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.282	217	0	0	NA	exonic	Scn10a	synonymous SNV	"Scn10a:NM_001205321:exon23:c.C3960T:p.S1320S,Scn10a:NM_009134:exon23:c.C3957T:p.S1319S"	9qF3	chr9-3342997-124108155	2	1	1	0.597	2	NON-ABERRANT	1	0.944723618	1	0.996037	CGG	synonymous	NA	NA	NA	NA
PW2020T2	chrX	48183071	PW2017tail	colon	sgMsh2	48183072	GA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.669	34	0	0	NA	exonic	Zdhhc9	frameshift deletion	Zdhhc9:NM_172465:exon5:c.574_575del:p.S192Pfs*9	XqA5	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	GGA	frameshift	GGAG	8	GGAGGGAG	-2
PW2020T2	chrX	56917701	PW2017tail	colon	sgMsh2	56917701	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	153	0	0	NA	exonic	Adgrg4	synonymous SNV	Adgrg4:NM_001362885:exon2:c.C5100T:p.T1700T	XqA6	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
PW2020T2	chrX	64270690	PW2017tail	colon	sgMsh2	64270690	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.618	91	0	0	NA	exonic	Slitrk4	frameshift insertion	"Slitrk4:NM_001365112:exon2:c.2369dupA:p.N790Kfs*8,Slitrk4:NM_178740:exon3:c.2369dupA:p.N790Kfs*8,Slitrk4:NM_001365111:exon4:c.2369dupA:p.N790Kfs*8"	XqA7.1	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	TGT	frameshift	T	8	TTTTTTTT	1
PW2020T2	chrX	94079149	PW2017tail	colon	sgMsh2	94079149	T	-	Deletion	Mutect2;Vardict	2	0.053	268	0	0	NA	exonic	Zfx	frameshift deletion	"Zfx:NM_001358354:exon8:c.1897delA:p.M633Cfs*16,Zfx:NM_001358355:exon8:c.1897delA:p.M633Cfs*16,Zfx:NM_011768:exon8:c.2047delA:p.M683Cfs*16,Zfx:NM_001044386:exon9:c.2047delA:p.M683Cfs*16,Zfx:NM_001358356:exon9:c.2047delA:p.M683Cfs*16"	XqC3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW2020T2	chrX	95642354	PW2017tail	colon	sgMsh2	95642354	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.241	30	0	0	NA	exonic	Zc4h2	nonsynonymous SNV	Zc4h2:NM_001289696:exon4:c.A403G:p.T135A	XqC3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	GTC	nonsynonymous	NA	NA	NA	NA
PW2020T2	chrX	124128556	PW2017tail	colon	sgMsh2	124128556	G	A	SNV	Mutect2;Vardict	2	0.024	349	0	0	NA	exonic	Vmn2r121	nonsynonymous SNV	Vmn2r121:NM_001100616:exon6:c.C1766T:p.A589V	XqE3	NA	NA	NA	NA	0.597	2	NON-ABERRANT	NA	NA	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr1	174042488	PW2017tail	colon	sgCtl	174042488	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	135	0	0	NA	exonic	Olfr433	nonsynonymous SNV	Olfr433:NM_146717:exon1:c.C537A:p.D179E	1qH3	chr1-9545447-193175881	2	2	0	0.619	2	NON-ABERRANT	1	0.126009693	3	1.00E-09	ACC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr11	119343910	PW2017tail	colon	sgCtl	119343910	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.089	46	0	0	NA	exonic	Card14	nonsynonymous SNV	Card14:NM_130886:exon22:c.C2695A:p.L899M	11qE2	chr11-3133205-120861039	2	1	1	0.619	2	NON-ABERRANT	1	0.287560582	3	0.9806071	GCT	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr12	76577954	PW2017tail	colon	sgCtl	76577954	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	77	0	0	NA	exonic	Plekhg3	nonsynonymous SNV	Plekhg3:NM_153804:exon19:c.C3572T:p.P1191L	12qC3	chr12-4957277-118301289	2	1	1	0.619	2	NON-ABERRANT	1	0.239095315	3	0.9998455	CCC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr17	5975805	PW2017tail	colon	sgCtl	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.422	193	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-5975805-90208269	2	1	1	0.619	2	NON-ABERRANT	1	0.68174475	2	0.9998899	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2613T1	chr17	19080680	PW2017tail	colon	sgCtl	19080680	G	A	SNV	Mutect2;Vardict	2	0.017	449	0	0	NA	exonic	Vmn2r98	nonsynonymous SNV	Vmn2r98:NM_001104550:exon6:c.G1943A:p.C648Y	17qA3.2	chr17-5975805-90208269	2	1	1	0.619	2	NON-ABERRANT	1	0.054927302	3	1	TGC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr17	80381409	PW2017tail	colon	sgCtl	80381409	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	97	0	0	NA	exonic	Arhgef33	nonsynonymous SNV	Arhgef33:NM_001145452:exon16:c.C2433A:p.S811R	17qE3	chr17-5975805-90208269	2	1	1	0.619	2	NON-ABERRANT	1	0.184168013	3	0.9999997	GCG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr18	15062922	PW2017tail	colon	sgCtl	15062922	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	82	0	0	NA	exonic	Kctd1	nonsynonymous SNV	Kctd1:NM_001142731:exon1:c.G643T:p.G215C	18qA1	chr18-7265185-80194980	2	1	1	0.619	2	NON-ABERRANT	1	0.171243942	3	0.9999987	CCG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr18	34312304	PW2017tail	colon	sgCtl	34312304	-	C	Insertion	Strelka2;Vardict	2	0.1964	112	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-7265185-80194980	2	1	1	0.619	2	NON-ABERRANT	1	0.63457189	NA	NA	CAC	frameshift	NA	NA	NA	1
PW2613T1	chr18	34312306	PW2017tail	colon	sgCtl	34312307	GT	-	Deletion	Strelka2;Vardict	2	0.1089	101	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2077_2078del:p.V693fs*0,Apc:NM_007462:exon16:c.2254_2255del:p.V752fs*0,Apc:NM_001360980:exon17:c.2308_2309del:p.V770fs*0"	18qB1	chr18-7265185-80194980	2	1	1	0.619	2	NON-ABERRANT	1	0.351857835	NA	NA	CGT	frameshift	NA	NA	NA	-2
PW2613T1	chr2	25460488	PW2017tail	colon	sgCtl	25460488	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	148	0	0	NA	exonic	Paxx	nonsynonymous SNV	Paxx:NM_153557:exon3:c.C193G:p.R65G	2qA3	chr2-4925576-181511691	2	1	1	0.619	2	NON-ABERRANT	1	0.62358643	2	0.9999647	CGG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr2	162948547	PW2017tail	colon	sgCtl	162948547	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	129	0	0	NA	exonic	L3mbtl1	nonsynonymous SNV	L3mbtl1:NM_001081338:exon6:c.G533T:p.C178F	2qH2	chr2-4925576-181511691	2	1	1	0.619	2	NON-ABERRANT	1	0.164781906	3	1.52E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr3	90181954	PW2017tail	colon	sgCtl	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	57	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-15331914-159911278	2	1	1	0.619	2	NON-ABERRANT	1	0.775444265	2	0.7604501	CGG	synonymous	NA	NA	NA	NA
PW2613T1	chr3	92022744	PW2017tail	colon	sgCtl	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.426	64	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-15331914-159911278	2	1	1	0.619	2	NON-ABERRANT	1	0.688206785	2	0.9629015	AGG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr4	72852341	PW2017tail	colon	sgCtl	72852341	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	181	0	0	NA	exonic	Aldoart1	stopgain	Aldoart1:NM_001199270:exon1:c.C229T:p.R77X	4qC3	chr4-3973093-156200568	2	1	1	0.619	2	NON-ABERRANT	1	0.336025848	3	0.9972841	CGG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr6	21217215	PW2017tail	colon	sgCtl	21217215	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	146	0	0	NA	exonic	Kcnd2	nonsynonymous SNV	Kcnd2:NM_019697:exon1:c.A917T:p.H306L	6qA2	chr6-3494310-146565716	2	1	1	0.619	2	NON-ABERRANT	1	0.297253635	3	0.9999068	CAC	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr6	72568867	PW2017tail	colon	sgCtl	72568867	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	63	0	0	NA	exonic	Elmod3	synonymous SNV	"Elmod3:NM_001253692:exon11:c.C891T:p.R297R,Elmod3:NM_001364554:exon11:c.C891T:p.R297R,Elmod3:NM_144917:exon12:c.C891T:p.R297R,Elmod3:NM_001364553:exon13:c.C891T:p.R297R"	6qC1	chr6-3494310-146565716	2	1	1	0.619	2	NON-ABERRANT	1	1	1	0.9806903	CGC	synonymous	NA	NA	NA	NA
PW2613T1	chr6	106489643	PW2017tail	colon	sgCtl	106489643	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	106	0	0	NA	exonic	Cntn4	nonsynonymous SNV	"Cntn4:NM_001364565:exon7:c.C505T:p.R169C,Cntn4:NM_001109751:exon8:c.C505T:p.R169C,Cntn4:NM_001364566:exon8:c.C505T:p.R169C,Cntn4:NM_001109749:exon9:c.C505T:p.R169C,Cntn4:NM_173004:exon9:c.C505T:p.R169C"	6qE1	chr6-3494310-146565716	2	1	1	0.619	2	NON-ABERRANT	1	0.423263328	2	0.9615014	CCG	nonsynonymous	NA	NA	NA	NA
PW2613T1	chr9	15925071	PW2017tail	colon	sgCtl	15925071	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.359	84	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon23:c.C12148G:p.Q4050E	9qA2	chr9-7368438-124127224	2	1	1	0.619	2	NON-ABERRANT	1	1	1	0.9956302	TGC	nonsynonymous	NA	NA	NA	NA
PW2613T2	chr13	27855240	PW2017tail	colon	sgCtl	27855240	C	T	SNV	Mutect2;Vardict	2	0.032	242	0	0	NA	exonic	Prl2c1	nonsynonymous SNV	"Prl2c1:NM_001045532:exon3:c.C229T:p.P77S,Prl2c1:NM_001361045:exon3:c.C229T:p.P77S"	13qA3.1	chr13-3932610-119495179	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.173441734	NA	NA	GCC	nonsynonymous	NA	NA	NA	NA
PW2613T2	chr17	5975805	PW2017tail	colon	sgCtl	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	204	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3170973-90208269	2	2	0	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	2	1	NA	NA	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2613T2	chr18	34312304	PW2017tail	colon	sgCtl	34312304	-	C	Insertion	Strelka2;Vardict	2	0.1333	195	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-7265185-80194980	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.722493225	NA	NA	CAC	frameshift	NA	NA	NA	1
PW2613T2	chr2	35162062	PW2017tail	colon	sgCtl	35162062	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	83	0	0	NA	exonic	Cntrl	nonsynonymous SNV	"Cntrl:NM_001379275:exon20:c.C3248T:p.T1083M,Cntrl:NM_001379274:exon30:c.C4907T:p.T1636M,Cntrl:NM_012018:exon30:c.C4904T:p.T1635M"	2qB	chr2-4925576-181801223	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.422764228	NA	NA	ACG	nonsynonymous	NA	NA	NA	NA
PW2613T2	chr2	166863616	PW2017tail	colon	sgCtl	166863616	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	129	0	0	NA	exonic	Arfgef2	synonymous SNV	Arfgef2:NM_001085495:exon20:c.G2766A:p.T922T	2qH3	chr2-4925576-181801223	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.650406504	NA	NA	CGG	synonymous	NA	NA	NA	NA
PW2613T2	chr3	90181954	PW2017tail	colon	sgCtl	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.428	82	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-8936373-159911278	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	1	NA	NA	CGG	synonymous	NA	NA	NA	NA
PW2613T2	chr3	92022744	PW2017tail	colon	sgCtl	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	94	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-8936373-159911278	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	1	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
PW2613T2	chr6	72568867	PW2017tail	colon	sgCtl	72568867	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.48	81	0	0	NA	exonic	Elmod3	synonymous SNV	"Elmod3:NM_001253692:exon11:c.C891T:p.R297R,Elmod3:NM_001364554:exon11:c.C891T:p.R297R,Elmod3:NM_144917:exon12:c.C891T:p.R297R,Elmod3:NM_001364553:exon13:c.C891T:p.R297R"	6qC1	chr6-3494310-148189608	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	1	NA	NA	CGC	synonymous	NA	NA	NA	NA
PW2613T2	chr7	23929115	PW2017tail	colon	sgCtl	23929115	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	433	0	0	NA	exonic	Vmn1r179	synonymous SNV	Vmn1r179:NM_207545:exon1:c.A730C:p.R244R	7qA3	chr7-3676345-143062472	2	2	0	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.390243902	NA	NA	CAG	synonymous	NA	NA	NA	NA
PW2613T2	chr8	83724237	PW2017tail	colon	sgCtl	83724237	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	113	0	0	NA	exonic	Adgre5	synonymous SNV	"Adgre5:NM_001163029:exon16:c.G2001A:p.L667L,Adgre5:NM_001163031:exon16:c.G1995A:p.L665L,Adgre5:NM_001163030:exon17:c.G2148A:p.L716L,Adgre5:NM_011925:exon18:c.G2283A:p.L761L"	8qC2	chr8-3583685-126965210	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.970189702	NA	NA	GCA	synonymous	GCAG	8	GCAGGCAG	NA
PW2613T2	chr9	15925071	PW2017tail	colon	sgCtl	15925071	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.262	89	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon23:c.C12148G:p.Q4050E	9qA2	chr9-7282188-124127224	2	1	1	0.369	2	NON-ABERRANT;POOR GOF (78.7%)	1	0.7100271	NA	NA	TGC	nonsynonymous	NA	NA	NA	NA
PW2619T1	chr1	20523541	PW2017tail	colon	sgCtl	20523541	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.055	133	0	0	NA	exonic	Pkhd1	synonymous SNV	Pkhd1:NM_153179:exon32:c.T4347C:p.S1449S	1qA4	chr1-9545471-195062457	2	2	0	0.526	2	NON-ABERRANT	1	0.209125475	NA	NA	CAG	synonymous	NA	NA	NA	NA
PW2619T1	chr15	94540402	PW2017tail	colon	sgCtl	94540402	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	170	0	0	NA	exonic	Pus7l	synonymous SNV	Pus7l:NM_172437:exon2:c.G561A:p.L187L	15qE3	chr15-6735277-102328608	2	1	1	0.526	2	NON-ABERRANT	1	0.16730038	NA	NA	TCA	synonymous	A	5	AAAAA	NA
PW2619T1	chr17	5975805	PW2017tail	colon	sgCtl	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.516	220	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-5975805-90208269	2	1	1	0.526	2	NON-ABERRANT	1	1	NA	NA	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2619T1	chr18	34312304	PW2017tail	colon	sgCtl	34312304	-	C	Insertion	Strelka2;Vardict	2	0.2614	90	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-7265185-80194980	2	1	1	0.526	2	NON-ABERRANT	1	0.99391635	NA	NA	CAC	frameshift	NA	NA	NA	1
PW2619T1	chr2	89844825	PW2017tail	colon	sgCtl	89844825	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.302	151	0	0	NA	exonic	Olfr48	synonymous SNV	Olfr48:NM_010990:exon1:c.C147A:p.A49A	2qE1	chr2-4925576-181615865	2	1	1	0.526	2	NON-ABERRANT	1	1	NA	NA	GGG	synonymous	NA	NA	NA	NA
PW2619T1	chr3	27117871	PW2017tail	colon	sgCtl	27117871	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	147	0	0	NA	exonic	Ect2	nonsynonymous SNV	"Ect2:NM_001177625:exon20:c.C2059T:p.H687Y,Ect2:NM_001177626:exon20:c.C2059T:p.H687Y,Ect2:NM_007900:exon21:c.C2152T:p.H718Y"	3qA3	chr3-15331914-157160743	2	1	1	0.526	2	NON-ABERRANT	1	0.349809886	NA	NA	TGA	nonsynonymous	NA	NA	NA	NA
PW2619T1	chr5	120483599	PW2017tail	colon	sgCtl	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	29	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3673201-150491063	2	2	0	0.526	2	NON-ABERRANT	2	0.773764259	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW2619T1	chr7	34095543	PW2017tail	colon	sgCtl	34095543	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	178	0	0	NA	exonic	Scgb1b30	synonymous SNV	Scgb1b30:NM_001099330:exon1:c.C30T:p.L10L	7qB1	chr7-3841421-143062472	2	1	1	0.526	2	NON-ABERRANT	1	0.939163498	NA	NA	TCG	synonymous	NA	NA	NA	NA
PW2716T1	chr1	134994010	PW2017tail	colon	sgCtl	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.583	24	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-9545471-193194439	2	2	0	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	2	1	1	0.9988788	GCG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr11	59038717	PW2017tail	colon	sgCtl	59038717	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.591	31	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon57:c.C15671G:p.A5224G,Obscn:NM_199152:exon64:c.C17630G:p.A5877G"	11qB1.3	chr11-3133205-120783193	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	1	0.9998054	GGC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr12	80399952	PW2017tail	colon	sgCtl	80399952	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	317	0	0	NA	exonic	Dcaf5	nonsynonymous SNV	"Dcaf5:NM_001364324:exon3:c.A146C:p.E49A,Dcaf5:NM_177267:exon3:c.A392C:p.E131A"	12qC3	chr12-3237715-118301289	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.112751678	3	1.03E-09	TTC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr12	80399972	PW2017tail	colon	sgCtl	80399972	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	311	0	0	NA	exonic	Dcaf5	nonsynonymous SNV	"Dcaf5:NM_001364324:exon3:c.A126C:p.Q42H,Dcaf5:NM_177267:exon3:c.A372C:p.Q124H"	12qC3	chr12-3237715-118301289	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.118120805	3	1.13E-09	CTT	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr14	84533257	PW2017tail	colon	sgCtl	84533257	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	65	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon4:c.A3174C:p.K1058N	14qD3	chr14-3072210-122309867	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.33557047	2	0.9543435	AAC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr14	122941931	PW2017tail	colon	sgCtl	122941931	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	117	0	0	NA	exonic	Tmtc4	nonsynonymous SNV	"Tmtc4:NM_001360599:exon10:c.T1201G:p.L401V,Tmtc4:NM_028651:exon10:c.T1201G:p.L401V,Tmtc4:NM_001360598:exon11:c.T1201G:p.L401V"	14qE5	NA	NA	NA	NA	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	NA	NA	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr17	5975805	PW2017tail	colon	sgCtl	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.43	228	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3170973-90208269	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	1	1	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2716T1	chr17	19793616	PW2017tail	colon	sgCtl	19793616	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	396	0	0	NA	exonic	Vmn2r103	synonymous SNV	Vmn2r103:NM_001104565:exon3:c.C669T:p.D223D	17qA3.2	chr17-3170973-90208269	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.112751678	3	1.00E-09	ACC	synonymous	NA	NA	NA	NA
PW2716T1	chr18	13846100	PW2017tail	colon	sgCtl	13846100	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	167	0	0	NA	exonic	Zfp521	nonsynonymous SNV	"Zfp521:NM_001360804:exon4:c.G1255A:p.A419T,Zfp521:NM_145492:exon4:c.G1255A:p.A419T"	18qA1	chr18-6333071-80029339	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.136912752	3	0.9999805	GCG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr18	50090518	PW2017tail	colon	sgCtl	50090518	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	105	0	0	NA	exonic	Tnfaip8	nonsynonymous SNV	"Tnfaip8:NM_001177759:exon2:c.A320C:p.H107P,Tnfaip8:NM_001177760:exon2:c.A320C:p.H107P,Tnfaip8:NM_001360935:exon2:c.A332C:p.H111P,Tnfaip8:NM_134131:exon2:c.A392C:p.H131P"	18qD1	chr18-6333071-80029339	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.832214765	1	0.9999994	CAC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr2	29878047	PW2017tail	colon	sgCtl	29878047	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	99	0	0	NA	exonic	Cercam	nonsynonymous SNV	Cercam:NM_207298:exon9:c.C1105A:p.L369I	2qB	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.319463087	2	0.9863454	GCT	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr2	85868912	PW2017tail	colon	sgCtl	85868912	C	G	SNV	Mutect2;Vardict	2	0.035	584	0	0	NA	exonic	Olfr1022	nonsynonymous SNV	Olfr1022:NM_146589:exon1:c.C319G:p.L107V	2qD	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.093959732	3	1	TCT	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr2	104471431	PW2017tail	colon	sgCtl	104471431	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.514	118	0	0	NA	exonic	Hipk3	nonsynonymous SNV	"Hipk3:NM_001145824:exon2:c.G415A:p.G139S,Hipk3:NM_010434:exon2:c.G415A:p.G139S"	2qE2	chr2-4925576-181511691	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr3	90181954	PW2017tail	colon	sgCtl	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.508	66	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-15331914-159911278	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	1	3.16E-08	CGG	synonymous	NA	NA	NA	NA
PW2716T1	chr3	92022744	PW2017tail	colon	sgCtl	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	75	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-15331914-159911278	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	1	1	4.21E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr4	115247649	PW2017tail	colon	sgCtl	115247649	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	320	0	0	NA	exonic	Cyp4a29	nonsynonymous SNV	Cyp4a29:NM_001100183:exon3:c.T353G:p.L118R	4qD1	chr4-3973093-150431620	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.147651007	3	2.54E-08	CTC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr6	47813295	PW2017tail	colon	sgCtl	47813295	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.37	31	0	0	NA	exonic	Pdia4	nonsynonymous SNV	"Pdia4:NM_001368756:exon1:c.C10G:p.R4G,Pdia4:NM_009787:exon1:c.C10G:p.R4G"	6qB2.3	chr6-3494310-149014300	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.993288591	1	0.9997739	CGG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr7	13665177	PW2017tail	colon	sgCtl	13665177	A	C	SNV	Mutect2;MuSe;Vardict	3	0.058	293	0	0	NA	exonic	Sult2a5	nonsynonymous SNV	Sult2a5:NM_001184980:exon5:c.A708C:p.E236D	7qA1	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.155704698	3	0.9999996	AAG	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr7	29987785	PW2017tail	colon	sgCtl	29987785	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	84	0	0	NA	exonic	Zfp568	nonsynonymous SNV	"Zfp568:NM_001033355:exon3:c.T13C:p.S5P,Zfp568:NM_001167872:exon3:c.T13C:p.S5P,Zfp568:NM_001167873:exon3:c.T13C:p.S5P"	7qB1	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.426845638	2	0.9998787	GTC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr7	85406905	PW2017tail	colon	sgCtl	85406905	T	G	SNV	Mutect2;Vardict	2	0.019	465	0	0	NA	exonic	Vmn2r69	nonsynonymous SNV	Vmn2r69:NM_001105182:exon6:c.A2024C:p.K675T	7qD3	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.051006711	3	1	CTT	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr7	85952236	PW2017tail	colon	sgCtl	85952236	G	T	SNV	Mutect2;Vardict	2	0.037	553	0	0	NA	exonic	Vmn2r74	nonsynonymous SNV	Vmn2r74:NM_001384912:exon6:c.C2184A:p.H728Q	7qD3	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.099328859	3	1	TGT	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr7	119530345	PW2017tail	colon	sgCtl	119530345	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.071	70	0	0	NA	exonic	Acsm5	nonsynonymous SNV	Acsm5:NM_178758:exon3:c.G279T:p.E93D	7qF2	chr7-4477867-142989150	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.190604027	3	0.9490324	AGC	nonsynonymous	NA	NA	NA	NA
PW2716T1	chr9	37711588	PW2017tail	colon	sgCtl	37711588	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	320	0	0	NA	exonic	Olfr160	synonymous SNV	Olfr160:NM_030553:exon1:c.T690C:p.N230N	9qA4	chr9-7282188-123664738	2	1	1	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	1	0.281879195	2	0.9998886	CAT	synonymous	NA	NA	NA	NA
PW2716T1	chrX	73547737	PW2017tail	colon	sgCtl	73547737	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	65	0	0	NA	exonic	Atp2b3	nonsynonymous SNV	"Atp2b3:NM_001310537:exon16:c.G2528A:p.R843H,Atp2b3:NM_177236:exon16:c.G2528A:p.R843H"	XqA7.3	NA	NA	NA	NA	0.745	2	NON-ABERRANT;POOR GOF (73.8%)	NA	NA	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr1	134994010	PW2017tail	colon	sgCtl	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.549	32	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-9545447-193175881	2	2	0	0.751	2	NON-ABERRANT;POOR GOF (73%)	2	1	1	0.9604287	GCG	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr11	59038717	PW2017tail	colon	sgCtl	59038717	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.598	28	0	0	NA	exonic	Obscn	nonsynonymous SNV	"Obscn:NM_001171512:exon57:c.C15671G:p.A5224G,Obscn:NM_199152:exon64:c.C17630G:p.A5877G"	11qB1.3	chr11-3133205-120861039	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	1	0.9502893	GGC	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr13	11785074	PW2017tail	colon	sgCtl	11785074	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	168	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon24:c.G2786A:p.R929H	13qA1	chr13-5864677-119495179	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.162450067	3	1.00E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr16	63595628	PW2017tail	colon	sgCtl	63595628	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	73	0	0	NA	exonic	Epha3	synonymous SNV	"Epha3:NM_001362452:exon11:c.C2004T:p.L668L,Epha3:NM_010140:exon11:c.C2007T:p.L669L"	16qC1.3	chr16-5239013-97453880	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	1	0.9964465	CGA	synonymous	NA	NA	NA	NA
PW2716T2	chr17	5975805	PW2017tail	colon	sgCtl	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.437	232	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3505882-90208269	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	1	0.9999997	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW2716T2	chr17	20777003	PW2017tail	colon	sgCtl	20777003	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	123	0	0	NA	exonic	Vmn1r228	synonymous SNV	Vmn1r228:NM_134192:exon1:c.C252T:p.N84N	17qA3.2	chr17-3505882-90208269	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.135818908	3	1.00E-09	CGT	synonymous	NA	NA	NA	NA
PW2716T2	chr18	34312306	PW2017tail	colon	sgCtl	34312306	-	T	Insertion	Strelka2;Vardict	2	0.1827	104	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2078dupT:p.R694fs*0,Apc:NM_007462:exon16:c.2255dupT:p.R753fs*0,Apc:NM_001360980:exon17:c.2309dupT:p.R771fs*0"	18qB1	chr18-7926015-80194980	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.486551265	NA	NA	CGT	frameshift	NA	NA	NA	1
PW2716T2	chr18	34314608	PW2017tail	colon	sgCtl	34314608	-	AGAATTA	Insertion	Mutect2;Vardict	2	0.121	135	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.4379_4380insAGAATTA:p.M1465Kfs*13,Apc:NM_007462:exon16:c.4556_4557insAGAATTA:p.M1524Kfs*13,Apc:NM_001360980:exon17:c.4610_4611insAGAATTA:p.M1542Kfs*13"	18qB1	chr18-7926015-80194980	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.322237017	NA	NA	GTA	frameshift	NA	NA	NA	7
PW2716T2	chr2	88124790	PW2017tail	colon	sgCtl	88124790	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.043	319	0	0	NA	exonic	Olfr1166	nonsynonymous SNV	Olfr1166:NM_146650:exon1:c.T194G:p.L65R	2qD	chr2-4925576-181631782	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.114513981	3	1	AAG	nonsynonymous	A	5	AAAAA	NA
PW2716T2	chr2	104471431	PW2017tail	colon	sgCtl	104471431	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.448	156	0	0	NA	exonic	Hipk3	nonsynonymous SNV	"Hipk3:NM_001145824:exon2:c.G415A:p.G139S,Hipk3:NM_010434:exon2:c.G415A:p.G139S"	2qE2	chr2-4925576-181631782	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	1	0.9999748	CCG	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr3	90181954	PW2017tail	colon	sgCtl	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	78	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-14536739-159911278	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.600532623	2	0.9868556	CGG	synonymous	NA	NA	NA	NA
PW2716T2	chr3	92022744	PW2017tail	colon	sgCtl	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.393	88	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-14536739-159911278	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	1	1	0.9985453	AGG	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr4	126868747	PW2017tail	colon	sgCtl	126868747	G	A	SNV	Mutect2;Vardict	2	0.028	194	0	0	NA	exonic	AU040320;Zmym4	nonsynonymous SNV	"AU040320:NM_001035525:exon23:c.G3197A:p.G1066E,AU040320:NM_001035526:exon23:c.G3197A:p.G1066E,Zmym4:NM_001357201:exon26:c.C4012T:p.P1338S,Zmym4:NM_001114399:exon28:c.C4282T:p.P1428S,Zmym4:NM_001379530:exon28:c.C4279T:p.P1427S"	4qD2.2	chr4-3973093-156200568	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.074567244	3	1	GGG	nonsynonymous	NA	NA	NA	NA
PW2716T2	chr5	13557301	PW2017tail	colon	sgCtl	13557301	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	115	0	0	NA	exonic	Sema3a	nonsynonymous SNV	"Sema3a:NM_009152:exon9:c.A962C:p.N321T,Sema3a:NM_001243072:exon10:c.A962C:p.N321T,Sema3a:NM_001243073:exon10:c.A962C:p.N321T"	5qA1	chr5-3673201-150548914	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.143808256	3	1.03E-09	AAT	nonsynonymous	A	5	AAAAA	NA
PW2716T2	chr5	74482165	PW2017tail	colon	sgCtl	74482165	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	118	0	0	NA	exonic	Scfd2	nonsynonymous SNV	"Scfd2:NM_001114660:exon3:c.A1120G:p.I374V,Scfd2:NM_001286437:exon3:c.A1120G:p.I374V,Scfd2:NM_178672:exon3:c.A1120G:p.I374V"	5qC3.3	chr5-3673201-150548914	2	1	1	0.751	2	NON-ABERRANT;POOR GOF (73%)	1	0.119840213	3	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr1	134184167	PW2017tail	colon	sgMsh3	134184173	TTTGGCG	-	Deletion	Mutect2;Strelka2	2	0.072	106	0	0	NA	exonic	Chil1	frameshift deletion	"Chil1:NM_001374626:exon4:c.298_304del:p.F100Kfs*20,Chil1:NM_007695:exon4:c.328_334del:p.F110Kfs*20"	1qE4	chr1-6233869-189343273	2	2	0	0.68	2	NON-ABERRANT	1	0.211764706	NA	NA	ATT	frameshift	NA	NA	NA	-7
PW3319T1	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.489	42	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6233869-189343273	2	2	0	0.68	2	NON-ABERRANT	2	0.719117647	1	0.6307365	GCG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr11	34501219	PW2017tail	colon	sgMsh3	34501219	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	153	0	0	NA	exonic	Dock2	nonsynonymous SNV	Dock2:NM_033374:exon25:c.A2505C:p.K835N	11qA4	chr11-3133205-120955574	2	1	1	0.68	2	NON-ABERRANT	1	0.85	1	0.9999976	CTT	nonsynonymous	TTCTGC	12	TTCTGCTTCTGC	NA
PW3319T1	chr13	64781823	PW2017tail	colon	sgMsh3	64781823	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	111	0	0	NA	exonic	Cntnap3	nonsynonymous SNV	Cntnap3:NM_001081129:exon10:c.T1561C:p.S521P	13qB3	chr13-6603014-119495179	2	1	1	0.68	2	NON-ABERRANT	1	0.464705882	2	0.9999996	GAG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr13	92274798	PW2017tail	colon	sgMsh3	92274798	-	A	Insertion	Strelka2;Vardict	2	0.3514	74	0	0	NA	exonic	Msh3	frameshift insertion	"Msh3:NM_001311120:exon14:c.1889dupT:p.V631Rfs*4,Msh3:NM_010829:exon14:c.1889dupT:p.V631Rfs*4"	13qC3	chr13-6603014-119495179	2	1	1	0.68	2	NON-ABERRANT	1	1	NA	NA	CGA	frameshift	NA	NA	NA	1
PW3319T1	chr13	92274799	PW2017tail	colon	sgMsh3	92274799	-	T	Insertion	Strelka2;Vardict	2	0.2533	75	0	0	NA	exonic	Msh3	frameshift insertion	"Msh3:NM_001311120:exon14:c.1888dupA:p.I630Nfs*5,Msh3:NM_010829:exon14:c.1888dupA:p.I630Nfs*5"	13qC3	chr13-6603014-119495179	2	1	1	0.68	2	NON-ABERRANT	1	0.745	NA	NA	GAT	frameshift	NA	NA	NA	1
PW3319T1	chr16	14205187	PW2017tail	colon	sgMsh3	14205187	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	108	0	0	NA	exonic	Myh11	nonsynonymous SNV	"Myh11:NM_001161775:exon34:c.G4873T:p.D1625Y,Myh11:NM_013607:exon34:c.G4873T:p.D1625Y"	16qA1	chr16-4689845-95410918	2	2	0	0.68	2	NON-ABERRANT	1	0.147058824	3	0.9999688	TCC	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr18	34312302	PW2017tail	colon	sgMsh3	34312311	TCACGTTAGG	-	Deletion	Strelka2;Vardict	2	0.2667	165	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2073_2082del:p.H692Nfs*4,Apc:NM_007462:exon16:c.2250_2259del:p.H751Nfs*4,Apc:NM_001360980:exon17:c.2304_2313del:p.H769Nfs*4"	18qB1	chr18-10104325-90527792	2	1	1	0.68	2	NON-ABERRANT	1	0.784411765	NA	NA	TTC	frameshift	NA	NA	NA	-10
PW3319T1	chr18	37675516	PW2017tail	colon	sgMsh3	37675516	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	162	0	0	NA	exonic	Pcdhga3	nonsynonymous SNV	Pcdhga3:NM_033586:exon1:c.G1021A:p.A341T	18qB3	chr18-10104325-90527792	2	1	1	0.68	2	NON-ABERRANT	1	0.155882353	3	0.9999992	CGC	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr2	129017283	PW2017tail	colon	sgMsh3	129017283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	201	0	0	NA	exonic	Zc3h6	nonsynonymous SNV	Zc3h6:NM_178404:exon12:c.A3233G:p.N1078S	2qF1	chr2-4992200-180717794	2	1	1	0.68	2	NON-ABERRANT	1	0.302941176	2	0.9983771	AAC	nonsynonymous	A	5	AAAAA	NA
PW3319T1	chr3	81204430	PW2017tail	colon	sgMsh3	81204430	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.169	121	0	0	NA	exonic	Pdgfc	frameshift deletion	"Pdgfc:NM_019971:exon4:c.691delA:p.S233Afs*3,Pdgfc:NM_001357746:exon5:c.481delA:p.S163Afs*3"	3qE3	chr3-15331830-152499486	2	1	1	0.68	2	NON-ABERRANT	1	0.497058824	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3319T1	chr3	103625593	PW2017tail	colon	sgMsh3	103625593	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	213	0	0	NA	exonic	Syt6	nonsynonymous SNV	"Syt6:NM_001276676:exon5:c.A1037C:p.E346A,Syt6:NM_001276677:exon5:c.A1037C:p.E346A,Syt6:NM_001276679:exon5:c.A1037C:p.E346A,Syt6:NM_001276681:exon5:c.A1037C:p.E346A,Syt6:NM_018800:exon5:c.A1292C:p.E431A"	3qF2.2	chr3-15331830-152499486	2	1	1	0.68	2	NON-ABERRANT	1	0.167647059	3	0.9999999	GAG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr4	63364191	PW2017tail	colon	sgMsh3	63364191	C	T	SNV	Mutect2;Vardict	2	0.022	523	0	0	NA	exonic	Orm2	nonsynonymous SNV	Orm2:NM_011016:exon5:c.C469T:p.R157W	4qB3	chr4-5799947-156200568	2	1	1	0.68	2	NON-ABERRANT	1	0.064705882	3	1	GCG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr4	104678715	PW2017tail	colon	sgMsh3	104678715	A	G	SNV	Mutect2;Vardict	2	0.025	231	0	0	NA	exonic	Dab1	nonsynonymous SNV	"Dab1:NM_010014:exon5:c.A320G:p.H107R,Dab1:NM_177259:exon5:c.A320G:p.H107R,Dab1:NM_001369046:exon7:c.A320G:p.H107R,Dab1:NM_001369048:exon7:c.A320G:p.H107R,Dab1:NM_001369047:exon8:c.A320G:p.H107R,Dab1:NM_001369049:exon8:c.A320G:p.H107R"	4qC6	chr4-5799947-156200568	2	1	1	0.68	2	NON-ABERRANT	1	0.073529412	3	1.00E-09	CAC	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr5	87081004	PW2017tail	colon	sgMsh3	87081004	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.511	413	0	0	NA	exonic	Ugt2b36	synonymous SNV	Ugt2b36:NM_001029867:exon5:c.C1179G:p.G393G	5qE1	chr5-3704467-150491063	2	2	0	0.68	2	NON-ABERRANT	2	1	1	1	TGC	synonymous	NA	NA	NA	NA
PW3319T1	chr6	58435502	PW2017tail	colon	sgMsh3	58435502	A	C	SNV	Mutect2;Vardict	2	0.024	418	0	0	NA	exonic	Vmn1r30	nonsynonymous SNV	Vmn1r30:NM_134177:exon1:c.T344G:p.F115C	6qB3	chr6-4754259-142096128	2	1	1	0.68	2	NON-ABERRANT	1	0.070588235	3	1	AAA	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr6	80022730	PW2017tail	colon	sgMsh3	80022730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	125	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001282102:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001347261:exon2:c.C1121T:p.A374V,Lrrtm4:NM_178731:exon2:c.C1121T:p.A374V"	6qC3	chr6-4754259-142096128	2	1	1	0.68	2	NON-ABERRANT	1	1	1	1.64E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr7	5327495	PW2017tail	colon	sgMsh3	5327495	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	276	0	0	NA	exonic	Nlrp2	nonsynonymous SNV	Nlrp2:NM_177690:exon5:c.A1901G:p.Q634R	7qA1	chr7-3908604-141858900	2	1	1	0.68	2	NON-ABERRANT	1	0.15	3	1.02E-09	CTG	nonsynonymous	NA	NA	NA	NA
PW3319T1	chr7	10634460	PW2017tail	colon	sgMsh3	10634460	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.39	211	0	0	NA	exonic	Vmn1r70	frameshift insertion	Vmn1r70:NM_134228:exon1:c.875dupT:p.K294fs*0	7qA1	chr7-3908604-141858900	2	1	1	0.68	2	NON-ABERRANT	1	1	NA	NA	GGT	frameshift	T	5	TTTTT	1
PW3319T1	chr7	105086477	PW2017tail	colon	sgMsh3	105086477	T	-	Deletion	Mutect2;Vardict	2	0.026	403	0	0	NA	exonic	Olfr679	frameshift deletion	Olfr679:NM_147044:exon1:c.760delT:p.F255Lfs*12	7qE3	chr7-3908604-141858900	2	1	1	0.68	2	NON-ABERRANT	1	0.076470588	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3319T1	chrX	136861207	PW2017tail	colon	sgMsh3	136861207	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	132	0	0	NA	exonic	Rab9b	nonsynonymous SNV	Rab9b:NM_176971:exon3:c.A443G:p.Y148C	XqF1	NA	NA	NA	NA	0.68	2	NON-ABERRANT	NA	NA	NA	NA	GTA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	36771064	PW2017tail	colon	sgMlh1	36771064	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	13	0	0	NA	exonic	Zap70	nonsynonymous SNV	"Zap70:NM_001289765:exon2:c.A254G:p.Q85R,Zap70:NM_001289766:exon2:c.A326G:p.Q109R,Zap70:NM_009539:exon2:c.A254G:p.Q85R"	1qB	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	1	1	0.7631392	CAG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	37995760	PW2017tail	colon	sgMlh1	37995760	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.263	87	0	0	NA	exonic	Txndc9	nonsynonymous SNV	Txndc9:NM_172054:exon2:c.C62T:p.A21V	1qB	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	1	1	0.9997302	GGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	46109334	PW2017tail	colon	sgMlh1	46109334	G	A	SNV	Mutect2;Vardict	2	0.025	293	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon8:c.G737A:p.R246H	1qC1.1	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.096153846	3	1	CGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	92588893	PW2017tail	colon	sgMlh1	92588893	C	-	Deletion	Mutect2;Vardict	2	0.047	158	0	0	NA	exonic	Olfr1412	frameshift deletion	Olfr1412:NM_146277:exon1:c.562delC:p.P189Rfs*15	1qD	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.180769231	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3321T1	chr1	134994010	PW2017tail	colon	sgMlh1	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	2	0.961538462	1	0.8918045	GCG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	136281925	PW2017tail	colon	sgMlh1	136281925	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	200	0	0	NA	exonic	Camsap2	nonsynonymous SNV	"Camsap2:NM_001347110:exon11:c.G1795A:p.V599I,Camsap2:NM_001347109:exon12:c.G1828A:p.V610I"	1qE4	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.169230769	3	1.00E-09	ACG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	139458193	PW2017tail	colon	sgMlh1	139458193	C	T	SNV	Mutect2;Vardict	2	0.033	133	0	0	NA	exonic	Aspm	nonsynonymous SNV	Aspm:NM_009791:exon3:c.C1574T:p.A525V	1qE4	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.126923077	3	1.16E-09	GCT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr1	182975016	PW2017tail	colon	sgMlh1	182975016	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	215	0	0	NA	exonic	Tlr5	synonymous SNV	Tlr5:NM_016928:exon4:c.T1884C:p.P628P	1qH5	chr1-4867294-193352278	2	2	0	0.52	2	NON-ABERRANT	1	0.188461538	3	1.01E-09	CTA	synonymous	NA	NA	NA	NA
PW3321T1	chr10	29225039	PW2017tail	colon	sgMlh1	29225039	T	C	SNV	Mutect2;Vardict	2	0.037	172	0	0	NA	exonic	9330159F19Rik	synonymous SNV	9330159F19Rik:NM_001162537:exon5:c.T1407C:p.P469P	10qA4	chr10-8786283-128943022	2	1	1	0.52	2	NON-ABERRANT	1	0.142307692	3	1.00E-09	CTG	synonymous	NA	NA	NA	NA
PW3321T1	chr10	57811276	PW2017tail	colon	sgMlh1	57811276	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	197	0	0	NA	exonic	Smpdl3a	nonsynonymous SNV	Smpdl3a:NM_020561:exon8:c.T1099G:p.L367V	10qB4	chr10-8786283-128943022	2	1	1	0.52	2	NON-ABERRANT	1	0.146153846	3	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr10	63566890	PW2017tail	colon	sgMlh1	63566890	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	87	0	0	NA	exonic	Ctnna3	nonsynonymous SNV	"Ctnna3:NM_001164376:exon4:c.G379A:p.A127T,Ctnna3:NM_177612:exon4:c.G379A:p.A127T"	10qB4	chr10-8786283-128943022	2	1	1	0.52	2	NON-ABERRANT	1	0.196153846	3	0.9999799	CGC	nonsynonymous	CCGC	8	CCGCCCGC	NA
PW3321T1	chr10	110779278	PW2017tail	colon	sgMlh1	110779278	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	77	0	0	NA	exonic	E2f7	synonymous SNV	"E2f7:NM_001358560:exon10:c.C1842T:p.S614S,E2f7:NM_178609:exon10:c.C1842T:p.S614S"	10qD1	chr10-8786283-128943022	2	1	1	0.52	2	NON-ABERRANT	1	0.323076923	3	0.9268051	GCC	synonymous	NA	NA	NA	NA
PW3321T1	chr10	130017964	PW2017tail	colon	sgMlh1	130017964	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	142	0	0	NA	exonic	Olfr820	nonsynonymous SNV	Olfr820:NM_146675:exon1:c.C602T:p.A201V	10qD3	NA	NA	NA	NA	0.52	2	NON-ABERRANT	NA	NA	NA	NA	GCT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr11	23294650	PW2017tail	colon	sgMlh1	23294650	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.255	182	0	0	NA	exonic	Xpo1	synonymous SNV	"Xpo1:NM_001035226:exon25:c.T3027C:p.P1009P,Xpo1:NM_134014:exon25:c.T3027C:p.P1009P"	11qA3.2	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.980769231	1	0.9999999	CTG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	29556206	PW2017tail	colon	sgMlh1	29556206	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	98	0	0	NA	exonic	Clhc1	synonymous SNV	"Clhc1:NM_001163521:exon3:c.G315A:p.E105E,Clhc1:NM_028504:exon3:c.G348A:p.E116E"	11qA3.3	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.223076923	3	0.9999576	AGC	synonymous	NA	NA	NA	NA
PW3321T1	chr11	70771482	PW2017tail	colon	sgMlh1	70771482	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	176	0	0	NA	exonic	Zfp3	nonsynonymous SNV	Zfp3:NM_177565:exon2:c.C266A:p.P89Q	11qB3	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.184615385	3	1.29E-09	CCG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr11	79565473	PW2017tail	colon	sgMlh1	79565473	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	134	0	0	NA	exonic	Nf1	synonymous SNV	Nf1:NM_010897:exon53:c.A7797G:p.S2599S	11qB5	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.165384615	3	6.89E-09	CAG	synonymous	AGTCTC	12	AGTCTCAGTCTC	NA
PW3321T1	chr11	82440525	PW2017tail	colon	sgMlh1	82440525	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.172	96	0	0	NA	exonic	Tmem132e	frameshift deletion	Tmem132e:NM_001304439:exon6:c.1583delC:p.L530Wfs*2	11qC	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.661538462	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3321T1	chr11	86061994	PW2017tail	colon	sgMlh1	86061994	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.164	89	0	0	NA	exonic	Brip1	frameshift deletion	Brip1:NM_178309:exon20:c.2960delA:p.N987Mfs*25	11qC	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.630769231	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3321T1	chr11	87731439	PW2017tail	colon	sgMlh1	87731439	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	107	0	0	NA	exonic	Rnf43	synonymous SNV	"Rnf43:NM_001363437:exon8:c.C984T:p.S328S,Rnf43:NM_172448:exon9:c.C1365T:p.S455S"	11qC	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	3	0.9999527	GCG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	94505632	PW2017tail	colon	sgMlh1	94505632	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	85	0	0	NA	exonic	Mycbpap	synonymous SNV	Mycbpap:NM_170671:exon14:c.G1935A:p.P645P	11qD	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.192307692	3	0.9999803	GCG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	97752668	PW2017tail	colon	sgMlh1	97752668	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.264	55	0	0	NA	exonic	Cwc25	frameshift deletion	Cwc25:NM_026186:exon7:c.786delC:p.R263Gfs*36	11qD	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3321T1	chr11	115183647	PW2017tail	colon	sgMlh1	115183647	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	85	0	0	NA	exonic	Nat9	synonymous SNV	"Nat9:NM_001362892:exon3:c.G192A:p.A64A,Nat9:NM_001362891:exon4:c.G279A:p.A93A,Nat9:NM_001362889:exon5:c.G369A:p.A123A,Nat9:NM_001362890:exon5:c.G369A:p.A123A,Nat9:NM_025400:exon5:c.G369A:p.A123A"	11qE2	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.35	3	0.7264622	ACG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	115350992	PW2017tail	colon	sgMlh1	115350992	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.244	53	0	0	NA	exonic	Hid1	synonymous SNV	"Hid1:NM_001346774:exon14:c.G1788A:p.T596T,Hid1:NM_175454:exon14:c.G1791A:p.T597T"	11qE2	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.938461538	1	0.976495	ACG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	116265471	PW2017tail	colon	sgMlh1	116265471	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	103	0	0	NA	exonic	Srp68	synonymous SNV	Srp68:NM_146032:exon4:c.G444A:p.P148P	11qE2	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.3	3	0.9908296	GCG	synonymous	NA	NA	NA	NA
PW3321T1	chr11	116438240	PW2017tail	colon	sgMlh1	116438240	C	-	Deletion	Strelka2;Vardict	2	0.1622	37	0	0	NA	exonic	Ubald2	frameshift deletion	Ubald2:NM_176902:exon3:c.430delC:p.G146Efs*37	11qE2	chr11-3133205-121426601	2	1	1	0.52	2	NON-ABERRANT	1	0.623846154	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3321T1	chr12	65113997	PW2017tail	colon	sgMlh1	65113997	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	170	0	0	NA	exonic	Fancm	frameshift deletion	"Fancm:NM_001364447:exon16:c.2025delA:p.K677Nfs*8,Fancm:NM_178912:exon16:c.4248delA:p.K1418Nfs*8"	12qC1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.361538462	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr12	72790684	PW2017tail	colon	sgMlh1	72790684	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	122	0	0	NA	exonic	Ppm1a	nonsynonymous SNV	Ppm1a:NM_008910:exon4:c.G1004A:p.R335H	12qC3	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	3	0.9999964	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr12	83532332	PW2017tail	colon	sgMlh1	83532332	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.133	102	0	0	NA	exonic	Dcaf4	nonsynonymous SNV	"Dcaf4:NM_001165256:exon5:c.A524G:p.Q175R,Dcaf4:NM_030246:exon6:c.A485G:p.Q162R"	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.511538462	2	0.999915	CAG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr12	84162393	PW2017tail	colon	sgMlh1	84162393	G	-	Deletion	Strelka2;Vardict	2	0.1622	37	0	0	NA	exonic	Mideas	frameshift deletion	"Mideas:NM_001163501:exon4:c.1934delC:p.P645Lfs*57,Mideas:NM_001163502:exon4:c.1934delC:p.P645Lfs*57"	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.623846154	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3321T1	chr12	84433471	PW2017tail	colon	sgMlh1	84433471	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	125	0	0	NA	exonic	Aldh6a1	synonymous SNV	"Aldh6a1:NM_001313967:exon11:c.C1230T:p.R410R,Aldh6a1:NM_134042:exon11:c.C1464T:p.R488R"	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	3	0.9999888	AGC	synonymous	NA	NA	NA	NA
PW3321T1	chr12	84980575	PW2017tail	colon	sgMlh1	84980575	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.033	371	0	0	NA	exonic	Fcf1	synonymous SNV	Fcf1:NM_028632:exon6:c.C426T:p.D142D	12qD1	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.126923077	3	1	ACG	synonymous	NA	NA	NA	NA
PW3321T1	chr12	102899469	PW2017tail	colon	sgMlh1	102899469	A	-	Deletion	Strelka2;Vardict	2	0.0694	72	0	0	NA	exonic	Cox8c	frameshift deletion	Cox8c:NM_001039049:exon1:c.104delA:p.I38Sfs*25	12qE	chr12-3252726-117875779	2	1	1	0.52	2	NON-ABERRANT	1	0.266923077	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW3321T1	chr13	59702264	PW2017tail	colon	sgMlh1	59702264	T	-	Deletion	Mutect2;Vardict	2	0.031	204	0	0	NA	exonic	Spata31d1a	frameshift deletion	Spata31d1a:NM_028157:exon4:c.2049delA:p.D684Tfs*10	13qB2	chr13-3556909-113346664	2	1	1	0.52	2	NON-ABERRANT	1	0.119230769	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3321T1	chr13	78025055	PW2017tail	colon	sgMlh1	78025055	G	A	SNV	Mutect2;Vardict	2	0.06	71	0	0	NA	exonic	Pou5f2	nonsynonymous SNV	Pou5f2:NM_029315:exon1:c.G115A:p.V39M	13qC1	chr13-3556909-113346664	2	1	1	0.52	2	NON-ABERRANT	1	0.230769231	3	0.9993035	GGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr14	25868873	PW2017tail	colon	sgMlh1	25868873	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.11	72	0	0	NA	exonic	Anxa11	nonsynonymous SNV	Anxa11:NM_013469:exon2:c.T2C:p.M1T	14qA3	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.423076923	2	9.47E-05	ATG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr14	30911995	PW2017tail	colon	sgMlh1	30911995	T	-	Deletion	Mutect2;Vardict	2	0.049	178	0	0	NA	exonic	Itih3	frameshift deletion	Itih3:NM_008407:exon18:c.2185delA:p.I729Sfs*2	14qB	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.188461538	NA	NA	ATT	frameshift	NA	NA	NA	-1
PW3321T1	chr14	52150017	PW2017tail	colon	sgMlh1	52150017	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.177	140	0	0	NA	exonic	Rpgrip1	frameshift deletion	"Rpgrip1:NM_001168515:exon19:c.2536delA:p.K847Nfs*12,Rpgrip1:NM_023879:exon19:c.3148delA:p.K1051Nfs*12"	14qC2	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.680769231	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr14	66170260	PW2017tail	colon	sgMlh1	66170260	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.056	118	0	0	NA	exonic	Ptk2b	synonymous SNV	"Ptk2b:NM_001162365:exon20:c.C1812T:p.T604T,Ptk2b:NM_001162366:exon20:c.C1812T:p.T604T,Ptk2b:NM_001360233:exon20:c.C1812T:p.T604T,Ptk2b:NM_172498:exon20:c.C1812T:p.T604T"	14qD1	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.215384615	3	0.9999963	CGG	synonymous	NA	NA	NA	NA
PW3321T1	chr14	69797067	PW2017tail	colon	sgMlh1	69797067	G	-	Deletion	Mutect2;Vardict	2	0.171	38	0	0	NA	exonic	Rhobtb2	frameshift deletion	Rhobtb2:NM_153514:exon5:c.708delC:p.K237Sfs*63	14qD2	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.657692308	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3321T1	chr14	111679011	PW2017tail	colon	sgMlh1	111679011	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	167	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.G141A:p.M47I,Slitrk5:NM_001378769:exon2:c.G66A:p.M22I,Slitrk5:NM_001378770:exon2:c.G66A:p.M22I,Slitrk5:NM_198865:exon2:c.G66A:p.M22I"	14qE4	chr14-3072210-123348696	2	1	1	0.52	2	NON-ABERRANT	1	0.180769231	3	1.51E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr15	9729820	PW2017tail	colon	sgMlh1	9729820	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.526	107	0	0	NA	exonic	Spef2	nonsynonymous SNV	"Spef2:NM_001305042:exon3:c.C211A:p.H71N,Spef2:NM_001305044:exon3:c.C211A:p.H71N,Spef2:NM_177123:exon3:c.C211A:p.H71N"	15qA1	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	1	1	0.9999598	TGA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr15	52331625	PW2017tail	colon	sgMlh1	52331625	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	219	0	0	NA	exonic	Slc30a8	nonsynonymous SNV	Slc30a8:NM_172816:exon6:c.C779T:p.A260V	15qC	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.180769231	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr15	75973638	PW2017tail	colon	sgMlh1	75973638	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.191	101	0	0	NA	exonic	Zfp707	frameshift deletion	"Zfp707:NM_001081065:exon3:c.194delA:p.S67Vfs*13,Zfp707:NM_001347040:exon3:c.332delA:p.S113Vfs*13,Zfp707:NM_001361464:exon3:c.362delA:p.S123Vfs*13,Zfp707:NM_001361465:exon4:c.293delA:p.S100Vfs*13"	15qD3	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.734615385	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr15	76172538	PW2017tail	colon	sgMlh1	76172538	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	99	0	0	NA	exonic	Plec	nonsynonymous SNV	"Plec:NM_011117:exon32:c.C13351T:p.R4451C,Plec:NM_201385:exon32:c.C13237T:p.R4413C,Plec:NM_201386:exon32:c.C13198T:p.R4400C,Plec:NM_201387:exon32:c.C12793T:p.R4265C,Plec:NM_201388:exon32:c.C12793T:p.R4265C,Plec:NM_201389:exon32:c.C13693T:p.R4565C,Plec:NM_201390:exon32:c.C13168T:p.R4390C,Plec:NM_201391:exon32:c.C13264T:p.R4422C,Plec:NM_201392:exon32:c.C12793T:p.R4265C,Plec:NM_201393:exon32:c.C13285T:p.R4429C,Plec:NM_201394:exon32:c.C13264T:p.R4422C,Plec:NM_001163540:exon33:c.C13708T:p.R4570C,Plec:NM_001163549:exon33:c.C13279T:p.R4427C,Plec:NM_001163542:exon34:c.C13402T:p.R4468C,Plec:NM_001164203:exon34:c.C12793T:p.R4265C"	15qD3	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.226923077	3	0.9999486	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr15	89419315	PW2017tail	colon	sgMlh1	89419315	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.289	48	0	0	NA	exonic	Cpt1b	nonsynonymous SNV	Cpt1b:NM_009948:exon14:c.C1616T:p.A539V	15qE3	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	1	1	0.9890911	TGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr15	101194842	PW2017tail	colon	sgMlh1	101194842	G	-	Deletion	Mutect2;Vardict	2	0.073	83	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon3:c.365delG:p.G123Afs*110	15qF1	chr15-3280572-103103068	2	1	1	0.52	2	NON-ABERRANT	1	0.280769231	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW3321T1	chr16	20712751	PW2017tail	colon	sgMlh1	20712751	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.1	92	0	0	NA	exonic	Clcn2	frameshift deletion	Clcn2:NM_009900:exon5:c.542delG:p.G181Efs*3	16qB1	chr16-4108277-97436779	2	2	0	0.52	2	NON-ABERRANT	1	0.384615385	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW3321T1	chr16	21153141	PW2017tail	colon	sgMlh1	21153141	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.211	309	0	0	NA	exonic	Teddm3	nonsynonymous SNV	Teddm3:NM_025634:exon1:c.C677T:p.A226V	16qB1	chr16-4108277-97436779	2	2	0	0.52	2	NON-ABERRANT	1	0.811538462	1	0.9990033	TGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr16	35662762	PW2017tail	colon	sgMlh1	35662762	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	91	0	0	NA	exonic	Sema5b	nonsynonymous SNV	Sema5b:NM_013661:exon21:c.C2987T:p.A996V	16qB3	chr16-4108277-97436779	2	2	0	0.52	2	NON-ABERRANT	1	0.265384615	3	0.9986599	GCA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr16	45560325	PW2017tail	colon	sgMlh1	45560325	G	A	SNV	Mutect2;Vardict	2	0.031	191	0	0	NA	exonic	Slc9c1	nonsynonymous SNV	Slc9c1:NM_198106:exon13:c.G1613A:p.R538H	16qB5	chr16-4108277-97436779	2	2	0	0.52	2	NON-ABERRANT	1	0.119230769	3	1.00E-09	CGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr16	97436779	PW2017tail	colon	sgMlh1	97436779	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	182	0	0	NA	exonic	Bace2	nonsynonymous SNV	Bace2:NM_019517:exon9:c.G1429A:p.A477T	16qC4	chr16-4108277-97436779	2	2	0	0.52	2	NON-ABERRANT	1	0.711538462	2	0.9509199	AGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	19393765	PW2017tail	colon	sgMlh1	19393765	G	-	Deletion	Mutect2;Vardict	2	0.026	396	0	0	NA	exonic	Vmn2r99	frameshift deletion	Vmn2r99:NM_001104551:exon6:c.1746delG:p.M584Wfs*2	17qA3.2	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.1	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW3321T1	chr17	24504224	PW2017tail	colon	sgMlh1	24504224	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	77	0	0	NA	exonic	Caskin1	nonsynonymous SNV	"Caskin1:NM_001360469:exon16:c.G1772A:p.S591N,Caskin1:NM_027937:exon18:c.G1985A:p.S662N"	17qA3.3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.446153846	2	0.9881592	AGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	28974308	PW2017tail	colon	sgMlh1	28974308	A	-	Deletion	Strelka2;Vardict	2	0.1169	77	0	0	NA	exonic	Stk38	frameshift deletion	"Stk38:NM_001357173:exon12:c.1146delT:p.F382Lfs*41,Stk38:NM_134115:exon12:c.1146delT:p.F382Lfs*41"	17qA3.3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.449615385	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW3321T1	chr17	35897824	PW2017tail	colon	sgMlh1	35897824	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	85	0	0	NA	exonic	Atat1	frameshift deletion	"Atat1:NM_001347378:exon12:c.1114delC:p.Q372Sfs*8,Atat1:NM_001142744:exon13:c.1183delC:p.Q395Sfs*8"	17qB1	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.407692308	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3321T1	chr17	37835401	PW2017tail	colon	sgMlh1	37835401	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.052	206	0	0	NA	exonic	Olfr125	nonsynonymous SNV	Olfr125:NM_146290:exon1:c.A401G:p.D134G	17qB1	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.2	3	1.09E-09	GAT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	56257470	PW2017tail	colon	sgMlh1	56257470	C	T	SNV	Mutect2;Vardict	2	0.08	75	0	0	NA	exonic	Fem1a	nonsynonymous SNV	Fem1a:NM_010192:exon1:c.C562T:p.H188Y	17qD	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.307692308	3	0.9663346	GCA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	56882581	PW2017tail	colon	sgMlh1	56882581	A	-	Deletion	Mutect2;Vardict	2	0.074	133	0	0	NA	exonic	Acsbg3	frameshift deletion	Acsbg3:NM_030141:exon7:c.695delA:p.K233Nfs*8	17qD	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.284615385	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr17	81649013	PW2017tail	colon	sgMlh1	81649013	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	106	0	0	NA	exonic	Slc8a1	nonsynonymous SNV	"Slc8a1:NM_001112798:exon2:c.C595T:p.R199C,Slc8a1:NM_001286684:exon2:c.C595T:p.R199C,Slc8a1:NM_011406:exon2:c.C595T:p.R199C"	17qE3	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.196153846	3	0.9999974	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	87717505	PW2017tail	colon	sgMlh1	87717505	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	162	0	0	NA	exonic	Msh2	nonsynonymous SNV	Msh2:NM_008628:exon12:c.G1810A:p.A604T	17qE4	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.330769231	3	0.9485514	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr17	88645257	PW2017tail	colon	sgMlh1	88645257	G	A	SNV	Mutect2;Vardict	2	0.046	95	0	0	NA	exonic	Ston1	nonsynonymous SNV	Ston1:NM_029858:exon4:c.G2161A:p.A721T	17qE4	chr17-3545491-89046578	2	2	0	0.52	2	NON-ABERRANT	1	0.176923077	3	0.9999978	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr18	20283061	PW2017tail	colon	sgMlh1	20283061	A	G	SNV	Mutect2;Vardict	2	0.042	275	0	0	NA	exonic	Dsg1c	nonsynonymous SNV	Dsg1c:NM_181680:exon15:c.A2018G:p.Y673C	18qA2	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.161538462	3	1	TAT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr18	33203691	PW2017tail	colon	sgMlh1	33203691	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	120	0	0	NA	exonic	Stard4	synonymous SNV	Stard4:NM_133774:exon6:c.G570A:p.Q190Q	18qB1	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.769230769	1	0.6663723	TCT	synonymous	GTCT	9	GTCTGTCTG	NA
PW3321T1	chr18	34312305	PW2017tail	colon	sgMlh1	34312305	-	A	Insertion	Strelka2;Vardict	2	0.4427	131	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076_2077insA:p.V693Sfs*1,Apc:NM_007462:exon16:c.2253_2254insA:p.V752Sfs*1,Apc:NM_001360980:exon17:c.2307_2308insA:p.V770Sfs*1"	18qB1	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.851346154	NA	NA	ACG	frameshift	NA	NA	NA	1
PW3321T1	chr18	34314233	PW2017tail	colon	sgMlh1	34314233	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	98	0	0	NA	exonic	Apc	nonsynonymous SNV	"Apc:NM_001360979:exon16:c.G4004T:p.S1335I,Apc:NM_007462:exon16:c.G4181T:p.S1394I,Apc:NM_001360980:exon17:c.G4235T:p.S1412I"	18qB1	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	3	0.9999678	AGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr18	37413099	PW2017tail	colon	sgMlh1	37413099	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	301	0	0	NA	exonic	Pcdhb10	synonymous SNV	Pcdhb10:NM_053135:exon1:c.T1227C:p.D409D	18qB3	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.111538462	3	1	ATA	synonymous	AG	8	AGAGAGAG	NA
PW3321T1	chr18	60245530	PW2017tail	colon	sgMlh1	60245530	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	109	0	0	NA	exonic	Gm4951	frameshift deletion	Gm4951:NM_001033767:exon3:c.136delA:p.N49Tfs*4	18qD3	chr18-6784725-90537064	2	1	1	0.52	2	NON-ABERRANT	1	0.415384615	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr19	6956166	PW2017tail	colon	sgMlh1	6956166	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.083	60	0	0	NA	exonic	Plcb3	nonsynonymous SNV	"Plcb3:NM_001290349:exon23:c.C2790A:p.S930R,Plcb3:NM_008874:exon23:c.C2790A:p.S930R"	19qA	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.319230769	3	0.9205506	AGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr19	13095417	PW2017tail	colon	sgMlh1	13095417	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	185	0	0	NA	exonic	Olfr1457	nonsynonymous SNV	Olfr1457:NM_146575:exon1:c.C230T:p.A77V	19qA	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.192307692	3	1.29E-09	AGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr19	13619585	PW2017tail	colon	sgMlh1	13619585	T	C	SNV	Mutect2;Vardict	2	0.016	526	0	0	NA	exonic	Olfr1487	nonsynonymous SNV	Olfr1487:NM_146636:exon1:c.T422C:p.V141A	19qA	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.061538462	3	1	GTC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr19	16780769	PW2017tail	colon	sgMlh1	16780769	T	-	Deletion	Strelka2;Vardict	2	0.129	62	0	0	NA	exonic	Vps13a	frameshift deletion	Vps13a:NM_173028:exon1:c.1delA:p.M1Wfs*10	19qB	chr19-3279478-61225035	2	1	1	0.52	2	NON-ABERRANT	1	0.496153846	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW3321T1	chr2	25248380	PW2017tail	colon	sgMlh1	25248380	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	92	0	0	NA	exonic	Ndor1	nonsynonymous SNV	"Ndor1:NM_001252541:exon9:c.C1193A:p.P398H,Ndor1:NM_001082476:exon11:c.C1394A:p.P465H,Ndor1:NM_001252542:exon11:c.C1187A:p.P396H"	2qA3	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.973076923	1	0.9995649	GGG	nonsynonymous	G	5	GGGGG	NA
PW3321T1	chr2	26964122	PW2017tail	colon	sgMlh1	26964122	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.209	47	0	0	NA	exonic	Rexo4	frameshift deletion	"Rexo4:NM_001362876:exon1:c.197delC:p.P66Rfs*25,Rexo4:NM_207234:exon1:c.197delC:p.P66Rfs*25"	2qA3	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.803846154	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3321T1	chr2	69165943	PW2017tail	colon	sgMlh1	69165943	A	-	Deletion	Mutect2;Vardict	2	0.055	137	0	0	NA	exonic	Nostrin	frameshift deletion	Nostrin:NM_181547:exon8:c.566delA:p.N191Tfs*8	2qC2	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.211538462	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr2	77199027	PW2017tail	colon	sgMlh1	77199027	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.091	62	0	0	NA	exonic	Sestd1	nonsynonymous SNV	Sestd1:NM_175465:exon11:c.C1006A:p.Q336K	2qC3	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.35	3	0.7469665	TGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr2	87961995	PW2017tail	colon	sgMlh1	87961995	C	-	Deletion	Mutect2;Vardict	2	0.042	204	0	0	NA	exonic	Olfr1157	frameshift deletion	Olfr1157:NM_146849:exon2:c.896delG:p.G299Vfs*6	2qD	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.161538462	NA	NA	ACC	frameshift	NA	NA	NA	-1
PW3321T1	chr2	90708128	PW2017tail	colon	sgMlh1	90708136	CATAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.086	164	0	0	NA	exonic	Nup160	frameshift deletion	Nup160:NM_021512:exon20:c.2274_2277del:p.E759Lfs*10	2qE1	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.330769231	NA	NA	TCA	frameshift	T	7	TTTTTTT	-9
PW3321T1	chr2	111912258	PW2017tail	colon	sgMlh1	111912258	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.257	269	0	0	NA	exonic	Olfr1306	nonsynonymous SNV	Olfr1306:NM_001011803:exon1:c.C671G:p.T224S	2qE3	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.988461538	1	1.03E-09	AGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr2	154319637	PW2017tail	colon	sgMlh1	154319637	T	-	Deletion	Mutect2;Vardict	2	0.033	164	0	0	NA	exonic	Bpifb9b	frameshift deletion	Bpifb9b:NM_001025574:exon14:c.1688delT:p.M563Rfs*11	2qH1	chr2-4992200-181684255	2	1	1	0.52	2	NON-ABERRANT	1	0.126923077	NA	NA	ATG	frameshift	A	7	AAAAAAA	-1
PW3321T1	chr3	88361027	PW2017tail	colon	sgMlh1	88361027	T	-	Deletion	Mutect2;Vardict	2	0.046	122	0	0	NA	exonic	Smg5	frameshift deletion	Smg5:NM_178246:exon22:c.2973delT:p.A992Pfs*15	3qF1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.176923077	NA	NA	CTG	frameshift	NA	NA	NA	-1
PW3321T1	chr3	88895267	PW2017tail	colon	sgMlh1	88895267	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.081	198	0	0	NA	exonic	Gon4l	nonsynonymous SNV	"Gon4l:NM_027389:exon21:c.G3184A:p.A1062T,Gon4l:NM_001242372:exon22:c.G3235A:p.A1079T"	3qF1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.311538462	3	0.9976691	AGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr3	90181954	PW2017tail	colon	sgMlh1	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.608	59	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	1	1	0.996142	CGG	synonymous	NA	NA	NA	NA
PW3321T1	chr3	90267733	PW2017tail	colon	sgMlh1	90267733	C	-	Deletion	Strelka2;Vardict	2	0.125	40	0	0	NA	exonic	Dennd4b	frameshift deletion	"Dennd4b:NM_001356483:exon2:c.298delC:p.L102Sfs*99,Dennd4b:NM_201407:exon2:c.331delC:p.L113Sfs*99"	3qF1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.480769231	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3321T1	chr3	92022744	PW2017tail	colon	sgMlh1	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.467	65	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.898076923	1	0.9726956	AGG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr3	114205841	PW2017tail	colon	sgMlh1	114205841	A	G	SNV	Mutect2;Vardict	2	0.042	110	0	0	NA	exonic	Col11a1	synonymous SNV	Col11a1:NM_007729:exon59:c.A4413G:p.R1471R	3qF3	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.161538462	3	0.9999999	GAG	synonymous	NA	NA	NA	NA
PW3321T1	chr3	121527104	PW2017tail	colon	sgMlh1	121527104	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	84	0	0	NA	exonic	Slc44a3	nonsynonymous SNV	Slc44a3:NM_145394:exon3:c.G247A:p.E83K	3qG1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.257692308	3	0.9987527	TCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr3	123382828	PW2017tail	colon	sgMlh1	123382828	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.06	147	0	0	NA	exonic	Mettl14	nonsynonymous SNV	Mettl14:NM_201638:exon3:c.C170T:p.T57I	3qG1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.230769231	3	0.9999987	TGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr3	135603742	PW2017tail	colon	sgMlh1	135603742	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	129	0	0	NA	exonic	Nfkb1	synonymous SNV	Nfkb1:NM_008689:exon16:c.T1590C:p.H530H	3qG3	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.619230769	2	0.9987759	GAT	synonymous	NA	NA	NA	NA
PW3321T1	chr3	142794113	PW2017tail	colon	sgMlh1	142794113	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	90	0	0	NA	exonic	Pkn2	nonsynonymous SNV	Pkn2:NM_178654:exon21:c.C2738T:p.P913L	3qH1	chr3-8666483-159911278	2	1	1	0.52	2	NON-ABERRANT	1	0.284615385	3	0.9949474	CGG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr4	32644256	PW2017tail	colon	sgMlh1	32644256	A	-	Deletion	Strelka2;Vardict	2	0.1974	76	0	0	NA	exonic	Casp8ap2	frameshift deletion	"Casp8ap2:NM_001122978:exon8:c.3328delA:p.K1112Nfs*5,Casp8ap2:NM_011997:exon8:c.3328delA:p.K1112Nfs*5"	4qA5	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.759230769	NA	NA	GAA	frameshift	A	9	AAAAAAAAA	-1
PW3321T1	chr4	34807135	PW2017tail	colon	sgMlh1	34807135	A	G	SNV	Mutect2;Vardict	2	0.042	98	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T5923C:p.S1975P	4qA5	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.161538462	3	0.9999995	GAC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr4	65323776	PW2017tail	colon	sgMlh1	65323776	G	A	SNV	Mutect2;Vardict	2	0.035	152	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon18:c.G4376A:p.G1459D	4qC1	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.134615385	3	1.02E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr4	116510700	PW2017tail	colon	sgMlh1	116510700	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	97	0	0	NA	exonic	Ipp	frameshift deletion	Ipp:NM_008389:exon2:c.129delG:p.K45Rfs*25	4qD1	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.565384615	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW3321T1	chr4	123297745	PW2017tail	colon	sgMlh1	123297745	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.185	48	0	0	NA	exonic	Pabpc4	frameshift deletion	"Pabpc4:NM_001356377:exon12:c.1648delC:p.Q552Rfs*51,Pabpc4:NM_148917:exon12:c.1600delC:p.Q536Rfs*51,Pabpc4:NM_130881:exon13:c.1735delC:p.Q581Rfs*51"	4qD2.2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.711538462	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3321T1	chr4	126346733	PW2017tail	colon	sgMlh1	126346733	T	C	SNV	Mutect2;Vardict	2	0.031	142	0	0	NA	exonic	Ago3	nonsynonymous SNV	Ago3:NM_153402:exon18:c.A2372G:p.Y791C	4qD2.2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.119230769	3	1.02E-09	GTA	nonsynonymous	CGTA	8	CGTACGTA	NA
PW3321T1	chr4	127946814	PW2017tail	colon	sgMlh1	127946814	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.056	100	0	0	NA	exonic	CK137956	synonymous SNV	CK137956:NM_001134733:exon3:c.G1098A:p.E366E	4qD2.2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.215384615	3	0.9999798	CCT	synonymous	NA	NA	NA	NA
PW3321T1	chr4	129294219	PW2017tail	colon	sgMlh1	129294219	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	17	0	0	NA	exonic	Sync	nonsynonymous SNV	Sync:NM_023485:exon2:c.A1043C:p.K348T	4qD2.2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	1	1	0.8258956	AAA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr4	156174254	PW2017tail	colon	sgMlh1	156174254	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	138	0	0	NA	exonic	Agrn	nonsynonymous SNV	"Agrn:NM_001369026:exon16:c.G2519A:p.G840D,Agrn:NM_021604:exon17:c.G2840A:p.G947D"	4qE2	chr4-5799947-156200568	2	1	1	0.52	2	NON-ABERRANT	1	0.184615385	3	2.55E-08	GCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr5	38155669	PW2017tail	colon	sgMlh1	38155669	C	T	SNV	Mutect2;Vardict	2	0.056	82	0	0	NA	exonic	Nsg1	nonsynonymous SNV	"Nsg1:NM_001359090:exon2:c.G185A:p.R62H,Nsg1:NM_001359091:exon3:c.G185A:p.R62H,Nsg1:NM_001359092:exon3:c.G185A:p.R62H,Nsg1:NM_010942:exon3:c.G185A:p.R62H"	5qB3	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.215384615	3	0.9998896	ACG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr5	57720453	PW2017tail	colon	sgMlh1	57720453	G	T	SNV	Mutect2;Vardict	2	0.04	100	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.G1349T:p.R450L,Pcdh7:NM_001310606:exon1:c.G1349T:p.R450L,Pcdh7:NM_001310608:exon1:c.G1349T:p.R450L,Pcdh7:NM_018764:exon1:c.G1349T:p.R450L"	5qC1	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.153846154	3	0.9999998	CGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr5	76245529	PW2017tail	colon	sgMlh1	76245529	T	-	Deletion	Mutect2;Vardict	2	0.075	129	0	0	NA	exonic	Clock	frameshift deletion	"Clock:NM_001305222:exon9:c.566delA:p.N189Ifs*2,Clock:NM_001289826:exon10:c.566delA:p.N189Ifs*2,Clock:NM_007715:exon10:c.566delA:p.N189Ifs*2"	5qC3.3	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.288461538	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3321T1	chr5	114212735	PW2017tail	colon	sgMlh1	114212735	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.086	62	0	0	NA	exonic	Acacb	nonsynonymous SNV	Acacb:NM_133904:exon21:c.G3304A:p.V1102M	5qF	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.330769231	3	0.8764949	CGT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr5	120483599	PW2017tail	colon	sgMlh1	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.953	21	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	2	1	1	0.8741638	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr5	145205483	PW2017tail	colon	sgMlh1	145205483	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.088	71	0	0	NA	exonic	Zkscan5	synonymous SNV	"Zkscan5:NM_001167944:exon1:c.A189G:p.G63G,Zkscan5:NM_001359187:exon1:c.A189G:p.G63G,Zkscan5:NM_001359191:exon1:c.A189G:p.G63G,Zkscan5:NM_001359192:exon1:c.A189G:p.G63G,Zkscan5:NM_016683:exon1:c.A189G:p.G63G"	5qG2	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.338461538	3	0.8380535	GAC	synonymous	NA	NA	NA	NA
PW3321T1	chr5	145984986	PW2017tail	colon	sgMlh1	145984986	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.195	269	0	0	NA	exonic	Cyp3a25	frameshift deletion	Cyp3a25:NM_019792:exon11:c.1137delA:p.D380Mfs*13	5qG2	chr5-3558819-150478141	2	2	0	0.52	2	NON-ABERRANT	1	0.75	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3321T1	chr6	24562512	PW2017tail	colon	sgMlh1	24562512	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	181	0	0	NA	exonic	Asb15	nonsynonymous SNV	Asb15:NM_080847:exon6:c.G472A:p.D158N	6qA3.1	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.615384615	2	0.9999356	TGA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr6	65108675	PW2017tail	colon	sgMlh1	65108675	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	116	0	0	NA	exonic	Smarcad1	synonymous SNV	"Smarcad1:NM_001253392:exon19:c.C2061T:p.S687S,Smarcad1:NM_001355250:exon21:c.C2616T:p.S872S,Smarcad1:NM_007958:exon21:c.C2616T:p.S872S"	6qC1	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.457692308	2	0.9997633	GCC	synonymous	NA	NA	NA	NA
PW3321T1	chr6	120758383	PW2017tail	colon	sgMlh1	120758383	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.25	86	0	0	NA	exonic	Cecr2	frameshift deletion	"Cecr2:NM_001128151:exon16:c.2495delG:p.A834Hfs*6,Cecr2:NM_001368706:exon16:c.2579delG:p.A862Hfs*6"	6qF1	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.961538462	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW3321T1	chr6	123741591	PW2017tail	colon	sgMlh1	123741591	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	392	0	0	NA	exonic	Vmn2r23	nonsynonymous SNV	Vmn2r23:NM_001104638:exon6:c.G1902A:p.M634I	6qF2	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.088461538	3	1	TGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr6	130016678	PW2017tail	colon	sgMlh1	130016678	T	-	Deletion	Strelka2;Vardict	2	0.0623	305	0	0	NA	exonic	Klra19;Klra6	frameshift deletion	"Klra6:NM_008464:exon6:c.629delA:p.K210Rfs*14,Klra19:NM_053154:exon6:c.629delA:p.K210Rfs*14"	6qF3	chr6-4758661-144023076	2	1	1	0.52	2	NON-ABERRANT	1	0.239615385	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3321T1	chr6	148294632	PW2017tail	colon	sgMlh1	148294632	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	83	0	0	NA	exonic	Tmtc1	nonsynonymous SNV	"Tmtc1:NM_001347518:exon10:c.G1481T:p.G494V,Tmtc1:NM_198967:exon10:c.G1481T:p.G494V"	6qG3	NA	NA	NA	NA	0.52	2	NON-ABERRANT	NA	NA	NA	NA	CCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr7	6480610	PW2017tail	colon	sgMlh1	6480610	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.057	322	0	0	NA	exonic	Olfr5	frameshift deletion	Olfr5:NM_146914:exon2:c.545delT:p.F182Sfs*20	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.219230769	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr7	12152622	PW2017tail	colon	sgMlh1	12152622	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.298	208	0	0	NA	exonic	Vmn1r78	synonymous SNV	Vmn1r78:NM_134208:exon1:c.T159C:p.T53T	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	1	1	3.70E-09	CTT	synonymous	NA	NA	NA	NA
PW3321T1	chr7	12581745	PW2017tail	colon	sgMlh1	12581745	G	A	SNV	Mutect2;Vardict	2	0.026	255	0	0	NA	exonic	Vmn2r53	synonymous SNV	Vmn2r53:NM_001104644:exon6:c.C2362T:p.L788L	7qA1	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.1	3	1	AGC	synonymous	NA	NA	NA	NA
PW3321T1	chr7	27189414	PW2017tail	colon	sgMlh1	27189414	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.166	63	0	0	NA	exonic	Snrpa	frameshift deletion	"Snrpa:NM_001046637:exon4:c.560delC:p.P187Lfs*93,Snrpa:NM_001285825:exon5:c.560delC:p.P187Lfs*93,Snrpa:NM_015782:exon5:c.560delC:p.P187Lfs*93"	7qA3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.638461538	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3321T1	chr7	38521931	PW2017tail	colon	sgMlh1	38521931	C	T	SNV	Mutect2;Vardict	2	0.03	183	0	0	NA	exonic	Gm5591	nonsynonymous SNV	Gm5591:NM_001013810:exon2:c.G713A:p.G238D	7qB3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.115384615	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr7	44192395	PW2017tail	colon	sgMlh1	44192395	A	-	Deletion	Mutect2;Vardict	2	0.052	252	0	0	NA	exonic	Klk1b24	frameshift deletion	Klk1b24:NM_010643:exon5:c.781delA:p.N262Tfs*11	7qB3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.2	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3321T1	chr7	48552324	PW2017tail	colon	sgMlh1	48552326	AGA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.111	91	0	0	NA	exonic	Mrgprb2	nonframeshift deletion	Mrgprb2:NM_175531:exon2:c.650_652del:p.F217del	7qB4	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.426923077	NA	NA	CAG	inframe	NA	NA	NA	-3
PW3321T1	chr7	103538601	PW2017tail	colon	sgMlh1	103538601	A	G	SNV	Mutect2;Vardict	2	0.037	205	0	0	NA	exonic	Olfr612	nonsynonymous SNV	Olfr612:NM_001200027:exon1:c.T632C:p.L211P	7qE3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.142307692	3	1.00E-09	AAG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr7	106713876	PW2017tail	colon	sgMlh1	106713876	G	-	Deletion	Mutect2;Vardict	2	0.033	252	0	0	NA	exonic	Olfr695	frameshift deletion	Olfr695:NM_146598:exon3:c.804delC:p.K269Nfs*10	7qE3	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.126923077	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW3321T1	chr7	140336712	PW2017tail	colon	sgMlh1	140336712	C	-	Deletion	Mutect2;Vardict	2	0.055	191	0	0	NA	exonic	Olfr527	frameshift deletion	Olfr527:NM_001011776:exon1:c.849delC:p.L285Sfs*4	7qF4	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.211538462	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3321T1	chr7	141793176	PW2017tail	colon	sgMlh1	141793176	G	-	Deletion	Mutect2;Vardict	2	0.061	102	0	0	NA	exonic	Muc5ac	frameshift deletion	Muc5ac:NM_010844:exon8:c.983delG:p.G329Afs*104	7qF5	chr7-4477867-142893198	2	1	1	0.52	2	NON-ABERRANT	1	0.234615385	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3321T1	chr8	14843581	PW2017tail	colon	sgMlh1	14843581	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	122	0	0	NA	exonic	Dlgap2	nonsynonymous SNV	"Dlgap2:NM_001145965:exon14:c.C2895A:p.S965R,Dlgap2:NM_172910:exon15:c.C2892A:p.S964R"	8qA1.1	chr8-3748601-127409529	2	1	1	0.52	2	NON-ABERRANT	1	0.134615385	3	2.80E-09	GCA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr8	47711956	PW2017tail	colon	sgMlh1	47711956	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	184	0	0	NA	exonic	Cdkn2aip	synonymous SNV	Cdkn2aip:NM_172407:exon3:c.C721T:p.L241L	8qB1.1	chr8-3748601-127409529	2	1	1	0.52	2	NON-ABERRANT	1	0.111538462	3	1.00E-09	AGG	synonymous	NA	NA	NA	NA
PW3321T1	chr8	106885236	PW2017tail	colon	sgMlh1	106885236	C	T	SNV	Mutect2;Vardict	2	0.059	127	0	0	NA	exonic	Derpc	nonsynonymous SNV	"Derpc:NM_001378378:exon2:c.G1070A:p.G357D,Derpc:NM_001378379:exon3:c.G1070A:p.G357D,Derpc:NM_001378376:exon4:c.G1070A:p.G357D,Derpc:NM_001378377:exon4:c.G1070A:p.G357D"	8qD3	chr8-3748601-127409529	2	1	1	0.52	2	NON-ABERRANT	1	0.226923077	3	0.9999954	GCC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr8	120753637	PW2017tail	colon	sgMlh1	120753637	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	64	0	0	NA	exonic	Irf8	nonsynonymous SNV	"Irf8:NM_001301811:exon7:c.T886C:p.F296L,Irf8:NM_008320:exon7:c.T886C:p.F296L"	8qE1	chr8-3748601-127409529	2	1	1	0.52	2	NON-ABERRANT	1	0.626923077	2	0.9595493	GTT	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr9	15736997	PW2017tail	colon	sgMlh1	15736997	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	210	0	0	NA	exonic	Slc36a4	nonsynonymous SNV	"Slc36a4:NM_001357565:exon10:c.G1154A:p.R385H,Slc36a4:NM_001357566:exon10:c.G758A:p.R253H,Slc36a4:NM_001357567:exon10:c.G758A:p.R253H,Slc36a4:NM_172289:exon10:c.G1154A:p.R385H"	9qA2	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.126923077	3	1.00E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr9	35789641	PW2017tail	colon	sgMlh1	35789641	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.029	289	0	0	NA	exonic	Pate6	nonsynonymous SNV	Pate6:NM_026593:exon2:c.A148G:p.I50V	9qA4	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.111538462	3	1	ATC	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr9	46290170	PW2017tail	colon	sgMlh1	46290170	A	-	Deletion	Strelka2;Vardict	2	0.2174	23	0	0	NA	exonic	Bud13	frameshift deletion	Bud13:NM_146000:exon5:c.1138delA:p.N383Ifs*108	9qA5.2	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.836153846	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
PW3321T1	chr9	50658727	PW2017tail	colon	sgMlh1	50658727	T	-	Deletion	Strelka2;Vardict	2	0.1308	237	0	0	NA	exonic	Dlat	frameshift deletion	Dlat:NM_145614:exon2:c.339delA:p.E114Kfs*9	9qA5.3	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.503076923	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW3321T1	chr9	56887870	PW2017tail	colon	sgMlh1	56887870	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	117	0	0	NA	exonic	Cspg4	nonsynonymous SNV	Cspg4:NM_139001:exon3:c.C2888T:p.T963I	9qB	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.203846154	3	0.9999985	ACA	nonsynonymous	NA	NA	NA	NA
PW3321T1	chr9	64716888	PW2017tail	colon	sgMlh1	64716888	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.145	138	0	0	NA	exonic	Rab11a	synonymous SNV	Rab11a:NM_017382:exon5:c.T612C:p.T204T	9qC	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.557692308	2	0.9999707	CAG	synonymous	NA	NA	NA	NA
PW3321T1	chr9	99316738	PW2017tail	colon	sgMlh1	99316738	G	A	SNV	Mutect2;Vardict	2	0.041	108	0	0	NA	exonic	Esyt3	synonymous SNV	Esyt3:NM_177775:exon20:c.C2391T:p.Y797Y	9qE3.3	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.157692308	3	0.9999999	CGT	synonymous	NA	NA	NA	NA
PW3321T1	chr9	104215763	PW2017tail	colon	sgMlh1	104215773	CCTTCCTTTGG	-	Deletion	Mutect2;Strelka2	2	0.103	151	0	0	NA	exonic	Dnajc13	frameshift deletion	"Dnajc13:NM_001163026:exon17:c.1771_1775del:p.E591fs*0,Dnajc13:NM_001359740:exon17:c.1771_1775del:p.E591fs*0"	9qF1	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.396153846	NA	NA	ACC	frameshift	CCTT	8	CCTTCCTT	-11
PW3321T1	chr9	111258474	PW2017tail	colon	sgMlh1	111258498	GTGTCCCATCCTCACCGTGATCAGG	-	Deletion	Strelka2;Vardict	2	0.2078	77	0	0	NA	exonic	Mlh1	frameshift deletion	Mlh1:NM_026810:exon5:c.444_453del:p.L149Wfs*7	9qF3	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.799230769	NA	NA	CGT	frameshift	C	5	CCCCC	-25
PW3321T1	chr9	120018056	PW2017tail	colon	sgMlh1	120018056	G	-	Deletion	Strelka2;Vardict	2	0.1101	109	0	0	NA	exonic	Xirp1	frameshift deletion	Xirp1:NM_011724:exon2:c.1760delC:p.P587Lfs*19	9qF4	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.423461538	NA	NA	AGG	frameshift	G	9	GGGGGGGGG	-1
PW3321T1	chr9	123779580	PW2017tail	colon	sgMlh1	123779580	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	278	0	0	NA	exonic	Ccr9	nonsynonymous SNV	"Ccr9:NM_009913:exon3:c.C326G:p.A109G,Ccr9:NM_001166625:exon4:c.C326G:p.A109G"	9qF4	chr9-7282188-124108155	2	1	1	0.52	2	NON-ABERRANT	1	0.146153846	3	1	GCT	nonsynonymous	TGC	11	TGCTGCTGCTG	NA
PW3321T1	chrX	12596198	PW2017tail	colon	sgMlh1	12596198	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	120	0	0	NA	exonic	Atp6ap2	nonsynonymous SNV	Atp6ap2:NM_027439:exon3:c.C214T:p.R72W	XqA1.1	chrX-7946841-169987896	2	2	0	0.52	2	NON-ABERRANT	1	0.173076923	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
PW3321T1	chrX	51390022	PW2017tail	colon	sgMlh1	51390022	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.026	204	0	0	NA	exonic	Hs6st2	synonymous SNV	"Hs6st2:NM_015819:exon2:c.G849A:p.A283A,Hs6st2:NM_001290467:exon3:c.G1287A:p.A429A,Hs6st2:NM_001290468:exon4:c.G969A:p.A323A,Hs6st2:NM_001077202:exon5:c.G1407A:p.A469A"	XqA5	chrX-7946841-169987896	2	2	0	0.52	2	NON-ABERRANT	1	0.1	NA	NA	ACG	synonymous	NA	NA	NA	NA
PW3321T1	chrX	72476254	PW2017tail	colon	sgMlh1	72476254	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	204	0	0	NA	exonic	Gabra3	synonymous SNV	"Gabra3:NM_001357814:exon6:c.G606A:p.V202V,Gabra3:NM_001357815:exon6:c.G648A:p.V216V,Gabra3:NM_001357816:exon6:c.G699A:p.V233V,Gabra3:NM_008067:exon6:c.G606A:p.V202V,Gabra3:NM_001358103:exon7:c.G606A:p.V202V"	XqA7.3	chrX-7946841-169987896	2	2	0	0.52	2	NON-ABERRANT	1	0.584615385	NA	NA	GCA	synonymous	NA	NA	NA	NA
PW3321T1	chrX	167474840	PW2017tail	colon	sgMlh1	167474840	G	-	Deletion	Mutect2;Vardict	2	0.052	119	0	0	NA	exonic	Frmpd4	frameshift deletion	"Frmpd4:NM_001368936:exon17:c.4416delC:p.M1473Cfs*32,Frmpd4:NM_001369234:exon19:c.4470delC:p.M1491Cfs*32"	XqF5	chrX-7946841-169987896	2	2	0	0.52	2	NON-ABERRANT	1	0.2	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr1	17161369	PW2017tail	colon	sgMlh1	17161369	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.113	128	0	0	NA	exonic	Gdap1	frameshift deletion	Gdap1:NM_010267:exon6:c.937delA:p.R315Gfs*15	1qA3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.342424242	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr1	34228910	PW2017tail	colon	sgMlh1	34228910	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	85	0	0	NA	exonic	Dst	synonymous SNV	"Dst:NM_133833:exon52:c.C9390T:p.C3130C,Dst:NM_134448:exon57:c.C15432T:p.C5144C,Dst:NM_001276764:exon60:c.C15966T:p.C5322C"	1qB	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.336363636	2	0.9786429	GCA	synonymous	TGCA	8	TGCATGCA	NA
PW3322T1	chr1	52799292	PW2017tail	colon	sgMlh1	52799292	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.332	113	0	0	NA	exonic	Inpp1	nonsynonymous SNV	Inpp1:NM_008384:exon2:c.A197G:p.E66G	1qC1.1	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	1	1	1.04E-09	TTC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr1	86132749	PW2017tail	colon	sgMlh1	86132749	-	A	Insertion	Strelka2;Vardict	2	0.3333	48	0	0	NA	exonic	Psmd1	frameshift insertion	Psmd1:NM_027357:exon22:c.2518dupA:p.E843Rfs*15	1qC5	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	1	NA	NA	CTA	frameshift	A	29	AAAAAAAAAGAAAAAGAAAAAGAAAAAAA	1
PW3322T1	chr1	88234091	PW2017tail	colon	sgMlh1	88234091	C	-	Deletion	Mutect2;Vardict	2	0.032	296	0	0	NA	exonic	Mroh2a	frameshift deletion	Mroh2a:NM_001281466:exon8:c.897delC:p.L301Cfs*18	1qD	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.096969697	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3322T1	chr1	107451900	PW2017tail	colon	sgMlh1	107451900	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.285	112	0	0	NA	exonic	Serpinb7	frameshift insertion	Serpinb7:NM_027548:exon8:c.1037dupA:p.Q348Afs*3	1qE2.1	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.863636364	NA	NA	TGA	frameshift	NA	NA	NA	1
PW3322T1	chr1	140354535	PW2017tail	colon	sgMlh1	140354535	C	T	SNV	Mutect2;Vardict	2	0.04	109	0	0	NA	exonic	Kcnt2	nonsynonymous SNV	Kcnt2:NM_001081027:exon3:c.C257T:p.P86L	1qF	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.121212121	3	0.9998631	CCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr1	150715741	PW2017tail	colon	sgMlh1	150715741	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.339	111	0	0	NA	exonic	Hmcn1	synonymous SNV	Hmcn1:NM_001024720:exon36:c.A5706C:p.A1902A	1qG1	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	1	1	1.06E-09	CTG	synonymous	NA	NA	NA	NA
PW3322T1	chr1	164179455	PW2017tail	colon	sgMlh1	164179455	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	125	0	0	NA	exonic	F5	nonsynonymous SNV	F5:NM_007976:exon6:c.A827C:p.E276A	1qH2.2	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.154545455	3	0.9995393	GAG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr1	173963979	PW2017tail	colon	sgMlh1	173963979	T	-	Deletion	Mutect2;Vardict	2	0.059	142	0	0	NA	exonic	Ifi202b	frameshift deletion	"Ifi202b:NM_008327:exon6:c.1132delA:p.S378Vfs*17,Ifi202b:NM_011940:exon6:c.1132delA:p.S378Vfs*17"	1qH3	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.178787879	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3322T1	chr1	191163797	PW2017tail	colon	sgMlh1	191163797	T	-	Deletion	Strelka2;Vardict	2	0.2078	77	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-6245696-193241229	2	2	0	0.66	2	NON-ABERRANT	1	0.62969697	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW3322T1	chr10	56123528	PW2017tail	colon	sgMlh1	56123528	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	137	0	0	NA	exonic	Tbc1d32	synonymous SNV	Tbc1d32:NM_001033385:exon22:c.G2547A:p.S849S	10qB3	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.133333333	3	0.9999593	GCG	synonymous	NA	NA	NA	NA
PW3322T1	chr10	61346804	PW2017tail	colon	sgMlh1	61346804	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.37	79	0	0	NA	exonic	Pald1	frameshift deletion	"Pald1:NM_001372378:exon10:c.1196delA:p.N399Tfs*72,Pald1:NM_013753:exon10:c.1193delA:p.N398Tfs*72"	10qB4	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3322T1	chr10	62989163	PW2017tail	colon	sgMlh1	62989163	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.232	48	0	0	NA	exonic	Rufy2	frameshift deletion	Rufy2:NM_027425:exon3:c.219delC:p.L75Wfs*36	10qB4	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.703030303	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3322T1	chr10	77551050	PW2017tail	colon	sgMlh1	77551050	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	166	0	0	NA	exonic	Itgb2	nonsynonymous SNV	Itgb2:NM_008404:exon8:c.G975T:p.K325N	10qC1	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.160606061	3	0.9999247	AGA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr10	93265343	PW2017tail	colon	sgMlh1	93265343	A	G	SNV	Mutect2;Vardict	2	0.053	86	0	0	NA	exonic	Elk3	nonsynonymous SNV	"Elk3:NM_001322265:exon3:c.T545C:p.V182A,Elk3:NM_001322268:exon3:c.T545C:p.V182A,Elk3:NM_013508:exon3:c.T545C:p.V182A"	10qC2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.160606061	3	0.9938405	CAC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr10	105370654	PW2017tail	colon	sgMlh1	105370654	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.073	59	0	0	NA	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon3:c.C779T:p.A260V	10qD1	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.221212121	3	0.8139974	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr10	107382516	PW2017tail	colon	sgMlh1	107382516	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.326	53	0	0	NA	exonic	Lin7a	nonsynonymous SNV	Lin7a:NM_001039354:exon4:c.G286A:p.A96T	10qD1	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.987878788	1	0.9999797	AGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr10	116776782	PW2017tail	colon	sgMlh1	116776782	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	57	0	0	NA	exonic	Myrfl	frameshift deletion	Myrfl:NM_001033333:exon25:c.2661delT:p.F887Lfs*58	10qD2	chr10-4969340-130453386	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr11	29422593	PW2017tail	colon	sgMlh1	29422593	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.288	91	0	0	NA	exonic	Ccdc88a	frameshift insertion	"Ccdc88a:NM_001363368:exon4:c.328dupA:p.N111Kfs*4,Ccdc88a:NM_001363369:exon4:c.328dupA:p.N111Kfs*4,Ccdc88a:NM_176841:exon4:c.328dupA:p.N111Kfs*4"	11qA3.3	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.872727273	NA	NA	GCA	frameshift	A	5	AAAAA	1
PW3322T1	chr11	50951202	PW2017tail	colon	sgMlh1	50951202	G	A	SNV	Mutect2;Vardict	2	0.086	57	0	0	NA	exonic	Prop1	nonsynonymous SNV	Prop1:NM_008936:exon3:c.C376T:p.R126W	11qB1.3	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.260606061	3	0.5267467	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	53541212	PW2017tail	colon	sgMlh1	53541212	A	-	Deletion	Mutect2;Vardict	2	0.063	141	0	0	NA	exonic	Septin8	nonframeshift deletion	"Septin8:NM_001252332:exon10:c.1289delA:p.X430X,Septin8:NM_001252333:exon10:c.1283delA:p.X428X"	11qB1.3	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.190909091	NA	NA	TAA	inframe	NA	NA	NA	-1
PW3322T1	chr11	58206706	PW2017tail	colon	sgMlh1	58206706	C	-	Deletion	Strelka2;Vardict	2	0.1231	195	0	0	NA	exonic	Igtp	frameshift deletion	Igtp:NM_018738:exon3:c.702delC:p.L237Yfs*2	11qB1.3	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.373030303	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
PW3322T1	chr11	95574407	PW2017tail	colon	sgMlh1	95574407	G	-	Deletion	Mutect2;Vardict	2	0.062	106	0	0	NA	exonic	Ngfr	frameshift deletion	Ngfr:NM_033217:exon4:c.614delC:p.P205Rfs*22	11qD	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.187878788	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr11	96827627	PW2017tail	colon	sgMlh1	96827627	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.286	62	0	0	NA	exonic	Nfe2l1	nonsynonymous SNV	"Nfe2l1:NM_001130450:exon2:c.C81A:p.D27E,Nfe2l1:NM_008686:exon2:c.C81A:p.D27E"	11qD	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.866666667	1	0.9997767	CGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	101195688	PW2017tail	colon	sgMlh1	101195688	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	131	0	0	NA	exonic	Ezh1	nonsynonymous SNV	Ezh1:NM_007970:exon16:c.G1679A:p.R560H	11qD	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.421212121	2	0.9999966	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	101556254	PW2017tail	colon	sgMlh1	101556254	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	93	0	0	NA	exonic	Nbr1	nonsynonymous SNV	"Nbr1:NM_001252220:exon4:c.A65G:p.D22G,Nbr1:NM_001252222:exon4:c.A65G:p.D22G,Nbr1:NM_001252223:exon4:c.A65G:p.D22G,Nbr1:NM_008676:exon4:c.A65G:p.D22G"	11qD	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.575757576	2	0.9338071	GAT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	103046454	PW2017tail	colon	sgMlh1	103046454	G	A	SNV	Mutect2;Vardict	2	0.049	89	0	0	NA	exonic	Nmt1	nonsynonymous SNV	Nmt1:NM_008707:exon3:c.G316A:p.A106T	11qE1	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.148484848	3	0.9972359	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	106238563	PW2017tail	colon	sgMlh1	106238563	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	162	0	0	NA	exonic	Ddx42	nonsynonymous SNV	"Ddx42:NM_001361642:exon4:c.A422G:p.Y141C,Ddx42:NM_001361640:exon6:c.A719G:p.Y240C,Ddx42:NM_001361644:exon6:c.A416G:p.Y139C,Ddx42:NM_001361643:exon10:c.A416G:p.Y139C,Ddx42:NM_028074:exon11:c.A1208G:p.Y403C"	11qE1	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.196969697	3	0.9969269	TAC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr11	121575355	PW2017tail	colon	sgMlh1	121575355	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.169	166	0	0	NA	exonic	Tbcd	nonsynonymous SNV	Tbcd:NM_029878:exon19:c.G1806A:p.M602I	11qE2	chr11-3133205-121575355	2	1	1	0.66	2	NON-ABERRANT	1	0.512121212	2	0.9999747	TGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr12	25036594	PW2017tail	colon	sgMlh1	25036594	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	108	0	0	NA	exonic	Kidins220	nonsynonymous SNV	Kidins220:NM_001081378:exon23:c.C3152T:p.T1051M	12qA1.3	chr12-3236683-118848353	2	1	1	0.66	2	NON-ABERRANT	1	0.696969697	1	0.9875685	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr12	38114554	PW2017tail	colon	sgMlh1	38114554	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	37	0	0	NA	exonic	Dgkb	nonsynonymous SNV	"Dgkb:NM_001361688:exon5:c.C323T:p.A108V,Dgkb:NM_178681:exon5:c.C323T:p.A108V,Dgkb:NM_001361686:exon6:c.C344T:p.A115V"	12qA3	chr12-3236683-118848353	2	1	1	0.66	2	NON-ABERRANT	1	0.551515152	2	0.8388568	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr12	38602798	PW2017tail	colon	sgMlh1	38602798	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.106	154	0	0	NA	exonic	Dgkb	synonymous SNV	"Dgkb:NM_001361688:exon23:c.G2181A:p.A727A,Dgkb:NM_178681:exon23:c.G2181A:p.A727A,Dgkb:NM_001361686:exon24:c.G2202A:p.A734A"	12qA3	chr12-3236683-118848353	2	1	1	0.66	2	NON-ABERRANT	1	0.321212121	2	0.9970567	CGG	synonymous	NA	NA	NA	NA
PW3322T1	chr12	88795596	PW2017tail	colon	sgMlh1	88795596	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.174	155	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	Nrxn3:NM_001198587:exon1:c.C412T:p.R138W	12qD3	chr12-3236683-118848353	2	1	1	0.66	2	NON-ABERRANT	1	0.527272727	2	0.9998089	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr12	102675463	PW2017tail	colon	sgMlh1	102675463	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	51	0	0	NA	exonic	Itpk1	stopgain	Itpk1:NM_172584:exon2:c.C100T:p.R34X	12qE	chr12-3236683-118848353	2	1	1	0.66	2	NON-ABERRANT	1	0.336363636	2	0.896216	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr13	11769901	PW2017tail	colon	sgMlh1	11769902	GC	-	Deletion	Mutect2;Vardict	2	0.038	114	0	0	NA	exonic	Ryr2	frameshift deletion	Ryr2:NM_023868:exon27:c.3164_3165del:p.R1055Hfs*12	13qA1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.115151515	NA	NA	TGC	frameshift	NA	NA	NA	-2
PW3322T1	chr13	75132052	PW2017tail	colon	sgMlh1	75132052	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.176	104	0	0	NA	exonic	Pcsk1	nonsynonymous SNV	Pcsk1:NM_013628:exon14:c.G1995T:p.K665N	13qC1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.533333333	2	0.9956871	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr13	75910903	PW2017tail	colon	sgMlh1	75910903	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.326	92	0	0	NA	exonic	Rhobtb3	frameshift deletion	Rhobtb3:NM_028493:exon6:c.775delT:p.Y259Tfs*4	13qC1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.987878788	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr13	77043725	PW2017tail	colon	sgMlh1	77043725	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.046	205	0	0	NA	exonic	Slf1	nonsynonymous SNV	Slf1:NM_134071:exon21:c.A2989G:p.N997D	13qC1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.139393939	3	0.9999993	TTG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr13	92708036	PW2017tail	colon	sgMlh1	92708036	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	143	0	0	NA	exonic	Serinc5	nonsynonymous SNV	Serinc5:NM_172588:exon12:c.G1285A:p.V429I	13qC3	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.381818182	2	0.999973	CGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr13	99434626	PW2017tail	colon	sgMlh1	99434626	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.345	143	0	0	NA	exonic	Map1b	frameshift deletion	Map1b:NM_008634:exon5:c.1586delC:p.P529Qfs*1	13qD1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr13	100221641	PW2017tail	colon	sgMlh1	100221641	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.278	352	0	0	NA	exonic	Naip5	nonsynonymous SNV	Naip5:NM_010870:exon10:c.G3086A:p.S1029N	13qD1	chr13-3556909-119495179	2	1	1	0.66	2	NON-ABERRANT	1	0.842424242	1	1	ACT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr14	43923212	PW2017tail	colon	sgMlh1	43923212	G	A	SNV	Mutect2;Vardict	2	0.017	441	0	0	NA	exonic	Ear10	nonsynonymous SNV	Ear10:NM_053112:exon1:c.C157T:p.R53C	14qC1	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	0.051515152	3	1	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr14	95881921	PW2017tail	colon	sgMlh1	95881921	A	-	Deletion	Strelka2;Vardict	2	0.3182	66	0	0	NA	exonic	Spertl	frameshift deletion	"Spertl:NM_001358241:exon2:c.113delA:p.K40Nfs*8,Spertl:NM_025733:exon2:c.113delA:p.K40Nfs*8"	14qE2.1	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	0.964242424	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3322T1	chr14	101479154	PW2017tail	colon	sgMlh1	101479154	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	174	0	0	NA	exonic	Tbc1d4	nonsynonymous SNV	Tbc1d4:NM_001081278:exon9:c.G1804A:p.A602T	14qE2.3	chr14-3072210-123348696	2	1	1	0.66	2	NON-ABERRANT	1	1	1	1	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr15	27772961	PW2017tail	colon	sgMlh1	27772961	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	35	0	0	NA	exonic	Trio	frameshift deletion	Trio:NM_001081302:exon36:c.5616delC:p.M1873Wfs*44	15qB1	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.515151515	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr15	44405849	PW2017tail	colon	sgMlh1	44405849	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.246	145	0	0	NA	exonic	Nudcd1	synonymous SNV	"Nudcd1:NM_001113554:exon3:c.T414C:p.I138I,Nudcd1:NM_026149:exon3:c.T414C:p.I138I"	15qB3.2	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.745454545	1	0.9999506	CAA	synonymous	NA	NA	NA	NA
PW3322T1	chr15	47586996	PW2017tail	colon	sgMlh1	47586996	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	84	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon69:c.G10771A:p.V3591I	15qB3.3	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.26969697	2	0.6123388	ACA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr15	66684105	PW2017tail	colon	sgMlh1	66684105	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	140	0	0	NA	exonic	Tg	nonsynonymous SNV	Tg:NM_009375:exon10:c.G2645A:p.G882D	15qD2	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.284848485	2	0.0955568	GGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr15	80211685	PW2017tail	colon	sgMlh1	80211685	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	98	0	0	NA	exonic	Mgat3	nonsynonymous SNV	Mgat3:NM_010795:exon2:c.G712A:p.A238T	15qE1	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	0.560606061	2	0.9739671	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr15	85017254	PW2017tail	colon	sgMlh1	85017254	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.367	30	0	0	NA	exonic	Upk3a	nonsynonymous SNV	Upk3a:NM_023478:exon1:c.G35A:p.C12Y	15qE2	chr15-6735277-103525164	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.9980749	TGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr16	11319808	PW2017tail	colon	sgMlh1	11319808	G	-	Deletion	Mutect2;Vardict	2	0.05	129	0	0	NA	exonic	Tnfrsf17	frameshift deletion	Tnfrsf17:NM_011608:exon3:c.408delG:p.D138Ifs*71	16qA1	chr16-3948854-96819699	2	1	1	0.66	2	NON-ABERRANT	1	0.151515152	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr16	59149755	PW2017tail	colon	sgMlh1	59149755	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.295	71	0	0	NA	exonic	Olfr195	frameshift deletion	Olfr195:NM_146998:exon1:c.904delA:p.T304Lfs*1	16qC1.3	chr16-3948854-96819699	2	1	1	0.66	2	NON-ABERRANT	1	0.893939394	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr17	18185134	PW2017tail	colon	sgMlh1	18185134	A	-	Deletion	Strelka2;Vardict	2	0.2844	109	0	0	NA	exonic	Vmn2r92	frameshift deletion	"Vmn2r92:NM_001104541:exon6:c.2539delA:p.T850Hfs*11,Vmn2r92:NM_001385105:exon6:c.2536delA:p.T849Hfs*11"	17qA3.2	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.861818182	NA	NA	GAA	frameshift	A	10	AAAAAAAAAA	-1
PW3322T1	chr17	28166412	PW2017tail	colon	sgMlh1	28166412	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.24	32	0	0	NA	exonic	Scube3	frameshift deletion	Scube3:NM_001004366:exon17:c.2127delC:p.R711Gfs*97	17qA3.3	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.727272727	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3322T1	chr17	32141393	PW2017tail	colon	sgMlh1	32141393	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	37	0	0	NA	exonic	Notch3	synonymous SNV	Notch3:NM_008716:exon25:c.T4563G:p.P1521P	17qB1	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.9995685	GAG	synonymous	NA	NA	NA	NA
PW3322T1	chr17	55799663	PW2017tail	colon	sgMlh1	55799663	G	-	Deletion	Mutect2;Vardict	2	0.045	143	0	0	NA	exonic	Adgre4	frameshift deletion	Adgre4:NM_139138:exon10:c.901delG:p.S303Afs*45	17qD	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	0.136363636	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr17	71894147	PW2017tail	colon	sgMlh1	71894147	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.352	86	0	0	NA	exonic	Alk	frameshift deletion	Alk:NM_007439:exon23:c.3586delC:p.R1196Afs*48	17qE1.3	chr17-3145212-89046578	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3322T1	chr18	36748582	PW2017tail	colon	sgMlh1	36748583	GA	-	Deletion	Strelka2;Vardict	2	0.25	96	0	0	NA	exonic	Ik	frameshift deletion	Ik:NM_011879:exon5:c.268_269del:p.E94Tfs*20	18qB2	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	0.757575758	NA	NA	TGA	frameshift	GA	14	GAGAGAGAGAGAGA	-2
PW3322T1	chr18	37448324	PW2017tail	colon	sgMlh1	37448324	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	141	0	0	NA	exonic	Pcdhb14	nonsynonymous SNV	Pcdhb14:NM_053139:exon1:c.A482C:p.D161A	18qB3	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	0.303030303	2	0.9778029	GAT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr18	37638410	PW2017tail	colon	sgMlh1	37638410	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	98	0	0	NA	exonic	Slc25a2	nonsynonymous SNV	Slc25a2:NM_001159275:exon1:c.T65C:p.V22A	18qB3	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	3	0.9962005	CAC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr18	38254350	PW2017tail	colon	sgMlh1	38254350	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.348	71	0	0	NA	exonic	Dele1	frameshift deletion	Dele1:NM_024179:exon6:c.642delC:p.P216Lfs*18	18qB3	chr18-3299673-86713505	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3322T1	chr19	3473772	PW2017tail	colon	sgMlh1	3473772	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.116	219	0	0	NA	exonic	Ppp6r3	nonsynonymous SNV	"Ppp6r3:NM_001164159:exon14:c.G1589A:p.G530D,Ppp6r3:NM_001360430:exon15:c.G1589A:p.G530D,Ppp6r3:NM_029456:exon15:c.G1640A:p.G547D,Ppp6r3:NM_001360429:exon16:c.G1727A:p.G576D,Ppp6r3:NM_028999:exon16:c.G1727A:p.G576D"	19qA	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.351515152	2	0.9999957	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr19	10223331	PW2017tail	colon	sgMlh1	10223331	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.163	50	0	0	NA	exonic	Myrf	nonsynonymous SNV	Myrf:NM_001033481:exon6:c.G977A:p.G326D	19qA	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.493939394	2	0.9774186	ACC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr19	11785519	PW2017tail	colon	sgMlh1	11785519	A	G	SNV	Mutect2;Vardict	2	0.044	125	0	0	NA	exonic	Stx3	synonymous SNV	"Stx3:NM_001360386:exon7:c.T255C:p.I85I,Stx3:NM_001025307:exon8:c.T546C:p.I182I,Stx3:NM_011502:exon8:c.T492C:p.I164I,Stx3:NM_152220:exon8:c.T546C:p.I182I,Stx3:NM_001286543:exon9:c.T255C:p.I85I"	19qA	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.133333333	3	0.9999043	CAA	synonymous	NA	NA	NA	NA
PW3322T1	chr19	30089343	PW2017tail	colon	sgMlh1	30089343	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.264	101	0	0	NA	exonic	Uhrf2	synonymous SNV	Uhrf2:NM_144873:exon14:c.G2166A:p.P722P	19qC1	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.8	1	0.9999537	CGG	synonymous	NA	NA	NA	NA
PW3322T1	chr19	47652187	PW2017tail	colon	sgMlh1	47652187	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	49	0	0	NA	exonic	Col17a1	nonsynonymous SNV	"Col17a1:NM_001290825:exon43:c.C2971T:p.P991S,Col17a1:NM_007732:exon43:c.C2971T:p.P991S"	19qD1	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.606060606	2	0.652555	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr19	56384110	PW2017tail	colon	sgMlh1	56384110	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.08	120	0	0	NA	exonic	Nrap	synonymous SNV	"Nrap:NM_001286552:exon4:c.G162A:p.L54L,Nrap:NM_008733:exon5:c.G408A:p.L136L,Nrap:NM_198059:exon5:c.G408A:p.L136L"	19qD2	chr19-3279444-58820964	2	1	1	0.66	2	NON-ABERRANT	1	0.242424242	3	0.7575725	GCA	synonymous	NA	NA	NA	NA
PW3322T1	chr2	25577561	PW2017tail	colon	sgMlh1	25577561	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	37	0	0	NA	exonic	Ajm1	synonymous SNV	Ajm1:NM_001005424:exon1:c.C2337T:p.Y779Y	2qA3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.336363636	2	0.8118749	GGT	synonymous	AGGT	8	AGGTAGGT	NA
PW3322T1	chr2	48898564	PW2017tail	colon	sgMlh1	48898564	A	-	Deletion	Strelka2;Vardict	2	0.1355	155	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.410606061	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3322T1	chr2	49488735	PW2017tail	colon	sgMlh1	49488735	A	-	Deletion	Strelka2;Vardict	2	0.1304	207	0	0	NA	exonic	Epc2	frameshift deletion	Epc2:NM_172663:exon2:c.200delA:p.E70Rfs*37	2qC1.1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.395151515	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3322T1	chr2	86923259	PW2017tail	colon	sgMlh1	86923259	T	-	Deletion	Mutect2;Vardict	2	0.034	309	0	0	NA	exonic	Olfr1098	frameshift deletion	Olfr1098:NM_146845:exon1:c.272delA:p.N91Ifs*16	2qD	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.103030303	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3322T1	chr2	105297785	PW2017tail	colon	sgMlh1	105297785	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.293	121	0	0	NA	exonic	Them7	nonsynonymous SNV	"Them7:NM_001159638:exon2:c.C38T:p.A13V,Them7:NM_028747:exon3:c.C110T:p.A37V"	2qE3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.887878788	1	1.60E-08	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr2	111621816	PW2017tail	colon	sgMlh1	111621816	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.343	225	0	0	NA	exonic	Olfr1297	frameshift deletion	Olfr1297:NM_146888:exon1:c.257delT:p.F86Sfs*31	2qE3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr2	153399446	PW2017tail	colon	sgMlh1	153399446	G	-	Deletion	Strelka2;Vardict	2	0.0847	59	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.256666667	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3322T1	chr2	154555604	PW2017tail	colon	sgMlh1	154555604	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	84	0	0	NA	exonic	Necab3	synonymous SNV	"Necab3:NM_001379147:exon3:c.C216A:p.G72G,Necab3:NM_001379148:exon3:c.C216A:p.G72G,Necab3:NM_021546:exon3:c.C216A:p.G72G,Necab3:NM_001379149:exon4:c.C123A:p.G41G"	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.557575758	2	0.9634686	TGC	synonymous	NA	NA	NA	NA
PW3322T1	chr2	155202236	PW2017tail	colon	sgMlh1	155202236	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	166	0	0	NA	exonic	Itch	nonsynonymous SNV	"Itch:NM_008395:exon15:c.G1460A:p.R487Q,Itch:NM_001243712:exon16:c.G1460A:p.R487Q"	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	1	1	1	CGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr2	156008595	PW2017tail	colon	sgMlh1	156008595	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.325	250	0	0	NA	exonic	Ergic3	frameshift deletion	"Ergic3:NM_001356413:exon3:c.191delG:p.D66Ifs*2,Ergic3:NM_001356414:exon3:c.191delG:p.D66Ifs*2,Ergic3:NM_025516:exon3:c.191delG:p.D66Ifs*2"	2qH1	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.984848485	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr2	162238077	PW2017tail	colon	sgMlh1	162238077	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.067	116	0	0	NA	exonic	Ptprt	synonymous SNV	"Ptprt:NM_001291149:exon6:c.C801A:p.S267S,Ptprt:NM_001291150:exon6:c.C801A:p.S267S,Ptprt:NM_001291151:exon6:c.C801A:p.S267S,Ptprt:NM_021464:exon6:c.C801A:p.S267S"	2qH2	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.203030303	3	0.9785622	TGG	synonymous	NA	NA	NA	NA
PW3322T1	chr2	164164781	PW2017tail	colon	sgMlh1	164164781	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.202	57	0	0	NA	exonic	Kcns1	nonsynonymous SNV	Kcns1:NM_008435:exon4:c.G1261A:p.A421T	2qH3	chr2-4513773-181006567	2	1	1	0.66	2	NON-ABERRANT	1	0.612121212	2	0.6249474	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr3	57426556	PW2017tail	colon	sgMlh1	57426556	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	142	0	0	NA	exonic	Tm4sf4	nonsynonymous SNV	Tm4sf4:NM_145539:exon2:c.C263T:p.A88V	3qD	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.190909091	3	0.9963902	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr3	89941675	PW2017tail	colon	sgMlh1	89941675	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	33	0	0	NA	exonic	Atp8b2	synonymous SNV	"Atp8b2:NM_001368650:exon26:c.G3351A:p.T1117T,Atp8b2:NM_001081182:exon27:c.G3294A:p.T1098T"	3qF1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.584848485	2	0.7047235	CCG	synonymous	NA	NA	NA	NA
PW3322T1	chr3	90181954	PW2017tail	colon	sgMlh1	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.381	67	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.9999993	CGG	synonymous	NA	NA	NA	NA
PW3322T1	chr3	92022744	PW2017tail	colon	sgMlh1	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.535	71	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.9999997	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr3	93214454	PW2017tail	colon	sgMlh1	93214454	A	G	SNV	Mutect2;Vardict	2	0.034	341	0	0	NA	exonic	Flg2	synonymous SNV	Flg2:NM_001013804:exon6:c.A3930G:p.Q1310Q	3qF2.1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.103030303	3	1.00E-09	AAC	synonymous	NA	NA	NA	NA
PW3322T1	chr3	95735246	PW2017tail	colon	sgMlh1	95735246	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.428	37	0	0	NA	exonic	Ecm1	frameshift deletion	"Ecm1:NM_001252653:exon9:c.1311delC:p.N438Tfs*21,Ecm1:NM_001355070:exon9:c.1311delC:p.N438Tfs*21,Ecm1:NM_007899:exon9:c.1314delC:p.N439Tfs*21"	3qF2.1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.648484848	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr3	104799766	PW2017tail	colon	sgMlh1	104799766	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.236	94	0	0	NA	exonic	Mov10	nonsynonymous SNV	"Mov10:NM_008619:exon12:c.A1916G:p.H639R,Mov10:NM_001163440:exon13:c.A2135G:p.H712R,Mov10:NM_001163441:exon13:c.A1916G:p.H639R"	3qF2.2	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.715151515	1	0.9914698	GTG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr3	123627969	PW2017tail	colon	sgMlh1	123627969	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	174	0	0	NA	exonic	Ndst3	nonsynonymous SNV	Ndst3:NM_031186:exon3:c.A1214C:p.K405T	3qG1	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.181818182	3	0.9995682	CTT	nonsynonymous	T	5	TTTTT	NA
PW3322T1	chr3	145933258	PW2017tail	colon	sgMlh1	145933258	A	G	SNV	Mutect2;Vardict	2	0.056	90	0	0	NA	exonic	Bcl10	synonymous SNV	Bcl10:NM_009740:exon3:c.A654G:p.S218S	3qH2	chr3-15331914-159911278	2	1	1	0.66	2	NON-ABERRANT	1	0.16969697	3	0.9919915	CAA	synonymous	NA	NA	NA	NA
PW3322T1	chr4	65613507	PW2017tail	colon	sgMlh1	65613507	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	32	0	0	NA	exonic	Trim32	nonsynonymous SNV	"Trim32:NM_001161782:exon2:c.G300A:p.M100I,Trim32:NM_053084:exon2:c.G300A:p.M100I"	4qC1	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.9987439	TGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr4	101890846	PW2017tail	colon	sgMlh1	101890846	A	C	SNV	Mutect2;Vardict	2	0.041	104	0	0	NA	exonic	C130073F10Rik	nonsynonymous SNV	C130073F10Rik:NM_001331179:exon2:c.T130G:p.F44V	4qC6	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.124242424	3	0.9997557	AAG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr4	123381255	PW2017tail	colon	sgMlh1	123381255	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	122	0	0	NA	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon72:c.C12890T:p.T4297I,Macf1:NM_001199136:exon77:c.C18971T:p.T6324I"	4qD2.2	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.136363636	3	0.9998524	AGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr4	132369759	PW2017tail	colon	sgMlh1	132369759	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	188	0	0	NA	exonic	Phactr4	nonsynonymous SNV	"Phactr4:NM_001161797:exon7:c.T1476A:p.D492E,Phactr4:NM_175306:exon8:c.T1557A:p.D519E"	4qD2.3	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.127272727	3	0.9999995	CAT	nonsynonymous	TCA	17	TCATCATCATCATCATC	NA
PW3322T1	chr4	132833036	PW2017tail	colon	sgMlh1	132833036	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	159	0	0	NA	exonic	Ppp1r8	nonsynonymous SNV	"Ppp1r8:NM_001290725:exon4:c.G353A:p.G118D,Ppp1r8:NM_001355198:exon4:c.G431A:p.G144D,Ppp1r8:NM_001355199:exon4:c.G431A:p.G144D,Ppp1r8:NM_146154:exon4:c.G353A:p.G118D"	4qD2.3	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.33030303	2	0.9989751	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr4	136613034	PW2017tail	colon	sgMlh1	136613034	G	A	SNV	Mutect2;Vardict	2	0.047	98	0	0	NA	exonic	Tex46	synonymous SNV	Tex46:NM_026300:exon2:c.G429A:p.S143S	4qD3	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.142424242	3	0.9988886	CGA	synonymous	NA	NA	NA	NA
PW3322T1	chr4	149654400	PW2017tail	colon	sgMlh1	149654400	C	-	Deletion	Mutect2;Vardict	2	0.044	150	0	0	NA	exonic	Pik3cd	frameshift deletion	"Pik3cd:NM_001164052:exon15:c.2056delG:p.E686Kfs*2,Pik3cd:NM_001029837:exon17:c.2068delG:p.E690Kfs*2,Pik3cd:NM_001164049:exon17:c.2068delG:p.E690Kfs*2,Pik3cd:NM_001164050:exon17:c.2059delG:p.E687Kfs*2,Pik3cd:NM_001164051:exon17:c.2065delG:p.E689Kfs*2,Pik3cd:NM_008840:exon18:c.2059delG:p.E687Kfs*2"	4qE2	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.133333333	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3322T1	chr4	150611011	PW2017tail	colon	sgMlh1	150611011	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	76	0	0	NA	exonic	Rere	nonsynonymous SNV	Rere:NM_001085492:exon13:c.A1442G:p.E481G	4qE2	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.360606061	2	0.988732	GAA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr4	151983212	PW2017tail	colon	sgMlh1	151983212	T	-	Deletion	Strelka2;Vardict	2	0.0952	63	0	0	NA	exonic	Thap3	frameshift deletion	"Thap3:NM_001145929:exon3:c.408delA:p.K136Nfs*5,Thap3:NM_175152:exon4:c.510delA:p.K170Nfs*5"	4qE2	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.288484848	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
PW3322T1	chr4	156046926	PW2017tail	colon	sgMlh1	156046926	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	97	0	0	NA	exonic	Ttll10	nonsynonymous SNV	"Ttll10:NM_001368641:exon5:c.G752A:p.R251H,Ttll10:NM_029264:exon8:c.G665A:p.R222H"	4qE2	chr4-5799947-156200568	2	1	1	0.66	2	NON-ABERRANT	1	0.193939394	3	0.9775516	GCG	nonsynonymous	GTGC	12	GTGCGTGCGTGC	NA
PW3322T1	chr5	21919039	PW2017tail	colon	sgMlh1	21919039	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	109	0	0	NA	exonic	Reln	nonsynonymous SNV	Reln:NM_001310464:exon52:c.C8468T:p.P2823L	5qA3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.56969697	2	0.9691808	CGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr5	28413323	PW2017tail	colon	sgMlh1	28413323	G	A	SNV	Mutect2;Vardict	2	0.03	157	0	0	NA	exonic	Rbm33	nonsynonymous SNV	Rbm33:NM_028234:exon18:c.G3595A:p.A1199T	5qB1	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.090909091	3	0.9999998	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr5	34559082	PW2017tail	colon	sgMlh1	34559082	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.108	75	0	0	NA	exonic	Sh3bp2	nonsynonymous SNV	"Sh3bp2:NM_001145858:exon8:c.C800T:p.A267V,Sh3bp2:NM_001145859:exon8:c.C836T:p.A279V,Sh3bp2:NM_011893:exon8:c.C668T:p.A223V"	5qB2	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.327272727	2	0.9493283	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr5	76204177	PW2017tail	colon	sgMlh1	76204177	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	148	0	0	NA	exonic	Tmem165	synonymous SNV	Tmem165:NM_011626:exon3:c.C504T:p.A168A	5qC3.3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.948484848	1	1.00E-09	CCA	synonymous	T	5	TTTTT	NA
PW3322T1	chr5	98872407	PW2017tail	colon	sgMlh1	98872407	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.397	149	0	0	NA	exonic	Bmp3	frameshift deletion	"Bmp3:NM_001310677:exon2:c.688delT:p.F231Sfs*121,Bmp3:NM_173404:exon2:c.688delT:p.F231Sfs*121"	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.601515152	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3322T1	chr5	98966533	PW2017tail	colon	sgMlh1	98966533	A	G	SNV	Mutect2;Vardict	2	0.048	85	0	0	NA	exonic	Prkg2	synonymous SNV	Prkg2:NM_008926:exon14:c.T1755C:p.D585D	5qE3	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.145454545	3	0.9969564	CAT	synonymous	NA	NA	NA	NA
PW3322T1	chr5	108228828	PW2017tail	colon	sgMlh1	108228828	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.339	167	0	0	NA	exonic	Ccdc18	frameshift deletion	Ccdc18:NM_028481:exon28:c.4134delA:p.M1381Cfs*8	5qF	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3322T1	chr5	109330518	PW2017tail	colon	sgMlh1	109330518	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	109	0	0	NA	exonic	Vmn2r16	synonymous SNV	"Vmn2r16:NM_001104627:exon1:c.C138T:p.C46C,Vmn2r16:NM_001385189:exon1:c.C138T:p.C46C"	5qF	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.151515152	3	0.9990314	GCG	synonymous	NA	NA	NA	NA
PW3322T1	chr5	113942255	PW2017tail	colon	sgMlh1	113942255	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	123	0	0	NA	exonic	Ssh1	nonsynonymous SNV	"Ssh1:NM_001363469:exon14:c.G3047A:p.R1016K,Ssh1:NM_198109:exon15:c.G3113A:p.R1038K"	5qF	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.160606061	3	0.9991944	CCT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr5	138064626	PW2017tail	colon	sgMlh1	138064626	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.343	286	0	0	NA	exonic	Smok3c	nonsynonymous SNV	Smok3c:NM_001310703:exon2:c.G374A:p.R125H	5qG2	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	1	1	1	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr5	138564338	PW2017tail	colon	sgMlh1	138564338	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	251	0	0	NA	exonic	1700123K08Rik	nonsynonymous SNV	1700123K08Rik:NM_029693:exon2:c.G140A:p.C47Y	5qG2	chr5-3704467-150534477	2	1	1	0.66	2	NON-ABERRANT	1	0.112121212	3	1.51E-09	ACA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	14718217	PW2017tail	colon	sgMlh1	14718217	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.259	148	0	0	NA	exonic	Ppp1r3a	frameshift deletion	Ppp1r3a:NM_080464:exon4:c.2697delA:p.K899Nfs*49	6qA1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.784848485	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3322T1	chr6	29448565	PW2017tail	colon	sgMlh1	29448565	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	125	0	0	NA	exonic	Flnc	synonymous SNV	"Flnc:NM_001081185:exon22:c.G3801A:p.L1267L,Flnc:NM_001311074:exon22:c.G3801A:p.L1267L"	6qA3.3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.139393939	3	0.99985	TGC	synonymous	NA	NA	NA	NA
PW3322T1	chr6	42927974	PW2017tail	colon	sgMlh1	42927974	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	142	0	0	NA	exonic	Olfr446	frameshift deletion	Olfr446:NM_146295:exon1:c.742delT:p.F249Lfs*35	6qB2.1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.251515152	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T1	chr6	55077648	PW2017tail	colon	sgMlh1	55077648	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	154	0	0	NA	exonic	Gars	nonsynonymous SNV	Gars:NM_180678:exon16:c.C1939T:p.R647C	6qB3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.233333333	3	0.8997769	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	55884744	PW2017tail	colon	sgMlh1	55884744	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	155	0	0	NA	exonic	Itprid1	nonsynonymous SNV	Itprid1:NM_001081665:exon5:c.T305C:p.M102T	6qB3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	1	1	1.00E-09	ATG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	57955965	PW2017tail	colon	sgMlh1	57955965	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	276	0	0	NA	exonic	Vmn1r24	synonymous SNV	Vmn1r24:NM_134173:exon1:c.C567T:p.G189G	6qB3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.078787879	3	1.00E-09	CGC	synonymous	NA	NA	NA	NA
PW3322T1	chr6	91989191	PW2017tail	colon	sgMlh1	91989191	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.3	86	0	0	NA	exonic	Fgd5	nonsynonymous SNV	Fgd5:NM_172731:exon2:c.C2404T:p.P802S	6qD1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.909090909	1	0.999999	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	118085384	PW2017tail	colon	sgMlh1	118085384	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	25	0	0	NA	exonic	Rasgef1a	nonsynonymous SNV	"Rasgef1a:NM_001316749:exon5:c.G580T:p.G194W,Rasgef1a:NM_001362103:exon5:c.G631T:p.G211W,Rasgef1a:NM_001362104:exon5:c.G580T:p.G194W,Rasgef1a:NM_027526:exon5:c.G604T:p.G202W,Rasgef1a:NM_001362105:exon6:c.G613T:p.G205W"	6qF1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.606060606	2	0.5964755	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	120481658	PW2017tail	colon	sgMlh1	120481658	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	56	0	0	NA	exonic	Il17ra	nonsynonymous SNV	Il17ra:NM_008359:exon13:c.G1769A:p.R590H	6qF1	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.278787879	2	9.49E-06	CGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr6	125363293	PW2017tail	colon	sgMlh1	125363293	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	75	0	0	NA	exonic	Plekhg6	nonsynonymous SNV	Plekhg6:NM_198604:exon16:c.T2103G:p.H701Q	6qF3	chr6-3483595-146766604	2	1	1	0.66	2	NON-ABERRANT	1	0.23030303	3	0.7989061	TAT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr7	9094727	PW2017tail	colon	sgMlh1	9094727	T	-	Deletion	Strelka2;Vardict	2	0.2222	261	0	0	NA	exonic	Vmn2r38	frameshift deletion	Vmn2r38:NM_001105070:exon2:c.366delA:p.K122Nfs*28	7qA1	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.673333333	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
PW3322T1	chr7	10748079	PW2017tail	colon	sgMlh1	10748079	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	173	0	0	NA	exonic	Vmn1r71	synonymous SNV	Vmn1r71:NM_145848:exon1:c.C681T:p.S227S	7qA1	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.151515152	3	0.9999798	GGG	synonymous	NA	NA	NA	NA
PW3322T1	chr7	13356195	PW2017tail	colon	sgMlh1	13356195	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.227	109	0	0	NA	exonic	Pla2g4c	frameshift deletion	"Pla2g4c:NM_001004762:exon14:c.1545delA:p.K517Nfs*4,Pla2g4c:NM_001168504:exon14:c.1575delA:p.K527Nfs*4"	7qA1	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.687878788	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T1	chr7	15902857	PW2017tail	colon	sgMlh1	15902857	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	56	0	0	NA	exonic	Crxos	nonsynonymous SNV	"Crxos:NM_001145190:exon2:c.G42T:p.K14N,Crxos:NM_001033638:exon4:c.G354T:p.K118N"	7qA2	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.606060606	2	7.83E-06	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr7	18682448	PW2017tail	colon	sgMlh1	18682448	A	C	SNV	Mutect2;MuSe;Vardict	3	0.054	412	0	0	NA	exonic	Psg20	nonsynonymous SNV	Psg20:NM_054058:exon3:c.T742G:p.F248V	7qA3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	3	1.20E-09	AAT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr7	25334678	PW2017tail	colon	sgMlh1	25334678	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.09	46	0	0	NA	exonic	Megf8	nonsynonymous SNV	Megf8:NM_001160400:exon11:c.G1901A:p.C634Y	7qA3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.272727273	2	0.544311	TGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr7	103893486	PW2017tail	colon	sgMlh1	103893486	A	-	Deletion	Mutect2;Vardict	2	0.029	251	0	0	NA	exonic	Olfr64	frameshift deletion	Olfr64:NM_013617:exon1:c.248delT:p.L83Yfs*2	7qE3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.087878788	NA	NA	TAA	frameshift	NA	NA	NA	-1
PW3322T1	chr7	108125091	PW2017tail	colon	sgMlh1	108125091	C	T	SNV	Mutect2;Vardict	2	0.024	498	0	0	NA	exonic	Olfr484	synonymous SNV	Olfr484:NM_146499:exon1:c.G171A:p.Q57Q	7qE3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.072727273	3	1	GCT	synonymous	NA	NA	NA	NA
PW3322T1	chr7	114523343	PW2017tail	colon	sgMlh1	114523343	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	219	0	0	NA	exonic	Pde3b	synonymous SNV	Pde3b:NM_011055:exon11:c.T2145C:p.R715R	7qF1	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.296969697	2	0.994946	GTG	synonymous	NA	NA	NA	NA
PW3322T1	chr7	127933696	PW2017tail	colon	sgMlh1	127933696	G	-	Deletion	Mutect2;Vardict	2	0.105	45	0	0	NA	exonic	Prss36	frameshift deletion	Prss36:NM_001319147:exon13:c.2023delC:p.L675Wfs*5	7qF3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.318181818	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr7	131561545	PW2017tail	colon	sgMlh1	131561545	G	A	SNV	Mutect2;Vardict	2	0.034	131	0	0	NA	exonic	Bub3	synonymous SNV	"Bub3:NM_001317350:exon3:c.G204A:p.T68T,Bub3:NM_009774:exon3:c.G204A:p.T68T"	7qF3	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.103030303	3	0.9999941	CGC	synonymous	NA	NA	NA	NA
PW3322T1	chr7	140162096	PW2017tail	colon	sgMlh1	140162096	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.319	133	0	0	NA	exonic	Olfr522	frameshift deletion	Olfr522:NM_146952:exon1:c.853delC:p.L285Cfs*1	7qF4	chr7-4131227-143497059	2	1	1	0.66	2	NON-ABERRANT	1	0.966666667	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T1	chr7	144595545	PW2017tail	colon	sgMlh1	144595545	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	134	0	0	NA	exonic	Ano1	nonsynonymous SNV	"Ano1:NM_001242349:exon23:c.G2395A:p.G799S,Ano1:NM_178642:exon24:c.G2407A:p.G803S"	7qF5	NA	NA	NA	NA	0.66	2	NON-ABERRANT	NA	NA	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr8	46579076	PW2017tail	colon	sgMlh1	46579076	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.34	46	0	0	NA	exonic	Primpol	nonsynonymous SNV	Primpol:NM_001001184:exon14:c.G1462A:p.G488R	8qB1.1	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	1	0.999937	CCG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr8	67758244	PW2017tail	colon	sgMlh1	67758244	T	-	Deletion	Strelka2;Vardict	2	0.381	21	0	0	NA	exonic	Psd3	frameshift deletion	"Psd3:NM_027626:exon3:c.225delA:p.K75Nfs*72,Psd3:NM_030263:exon8:c.651delA:p.K217Nfs*72,Psd3:NM_177698:exon10:c.2109delA:p.K703Nfs*72"	8qB3.2	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
PW3322T1	chr8	72100496	PW2017tail	colon	sgMlh1	72100496	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	290	0	0	NA	exonic	Olfr373	synonymous SNV	Olfr373:NM_146539:exon1:c.G735A:p.V245V	8qB3.3	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	0.345454545	2	0.9999998	TGA	synonymous	NA	NA	NA	NA
PW3322T1	chr8	79665043	PW2017tail	colon	sgMlh1	79665043	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	165	0	0	NA	exonic	Otud4	nonsynonymous SNV	"Otud4:NM_001081164:exon14:c.G1316A:p.G439D,Otud4:NM_001256033:exon14:c.G1319A:p.G440D"	8qC1	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	0.184848485	3	0.9991487	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr8	107367285	PW2017tail	colon	sgMlh1	107367285	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.081	154	0	0	NA	exonic	Nfat5	synonymous SNV	"Nfat5:NM_001286260:exon12:c.C2103T:p.S701S,Nfat5:NM_018823:exon13:c.C2157T:p.S719S,Nfat5:NM_133957:exon14:c.C1875T:p.S625S"	8qD3	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	0.245454545	3	0.748106	GCG	synonymous	NA	NA	NA	NA
PW3322T1	chr8	116973629	PW2017tail	colon	sgMlh1	116973629	-	A	Insertion	Strelka2;Vardict	2	0.0594	101	0	0	NA	exonic	1700030J22Rik	frameshift insertion	"1700030J22Rik:NM_001357253:exon2:c.32dupT:p.L11Ffs*9,1700030J22Rik:NM_001357254:exon2:c.32dupT:p.L11Ffs*9,1700030J22Rik:NM_027103:exon2:c.32dupT:p.L11Ffs*9"	8qE1	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	0.18	NA	NA	CTA	frameshift	A	5	AAAAA	1
PW3322T1	chr8	123359504	PW2017tail	colon	sgMlh1	123359504	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.114	45	0	0	NA	exonic	Spire2	nonsynonymous SNV	Spire2:NM_172287:exon8:c.C1274G:p.T425R	8qE1	chr8-3583685-128713399	2	1	1	0.66	2	NON-ABERRANT	1	0.345454545	2	0.8909122	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	18815485	PW2017tail	colon	sgMlh1	18815485	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	214	0	0	NA	exonic	Olfr828	nonsynonymous SNV	Olfr828:NM_146605:exon1:c.A808C:p.N270H	9qA2	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.163636364	3	0.9999922	TTT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	37315415	PW2017tail	colon	sgMlh1	37315415	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.065	124	0	0	NA	exonic	Ccdc15	nonsynonymous SNV	Ccdc15:NM_001081429:exon7:c.A1223G:p.Y408C	9qA4	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.196969697	3	0.9890797	GTA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	40075149	PW2017tail	colon	sgMlh1	40075149	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.258	72	0	0	NA	exonic	Olfr982	nonsynonymous SNV	Olfr982:NM_146854:exon1:c.A853G:p.T285A	9qA5.1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.781818182	1	0.9982132	CAC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	53375205	PW2017tail	colon	sgMlh1	53375205	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.318	133	0	0	NA	exonic	Exph5	frameshift deletion	Exph5:NM_176846:exon6:c.3585delA:p.T1198Lfs*35	9qA5.3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.963636364	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW3322T1	chr9	71725305	PW2017tail	colon	sgMlh1	71725305	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.253	94	0	0	NA	exonic	Cgnl1	nonsynonymous SNV	"Cgnl1:NM_001304362:exon2:c.C763T:p.R255W,Cgnl1:NM_026599:exon2:c.C763T:p.R255W"	9qD	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.766666667	1	0.9994478	CGT	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	73001851	PW2017tail	colon	sgMlh1	73001851	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	56	0	0	NA	exonic	Ccpg1	nonsynonymous SNV	"Ccpg1:NM_001114328:exon5:c.T433C:p.Y145H,Ccpg1:NM_001286544:exon5:c.T433C:p.Y145H,Ccpg1:NM_001286545:exon5:c.T433C:p.Y145H,Ccpg1:NM_001359295:exon5:c.T433C:p.Y145H,Ccpg1:NM_001359296:exon5:c.T433C:p.Y145H,Ccpg1:NM_028181:exon5:c.T433C:p.Y145H"	9qD	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.487878788	2	0.9878691	GTA	nonsynonymous	NA	NA	NA	NA
PW3322T1	chr9	80136750	PW2017tail	colon	sgMlh1	80136750	A	-	Deletion	Strelka2;Vardict	2	0.1224	98	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.370909091	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
PW3322T1	chr9	87210878	PW2017tail	colon	sgMlh1	87210878	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.166	87	0	0	NA	exonic	Cep162	synonymous SNV	Cep162:NM_199316:exon21:c.T2691C:p.S897S	9qE3.1	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.503030303	2	0.9976994	CAG	synonymous	NA	NA	NA	NA
PW3322T1	chr9	111258482	PW2017tail	colon	sgMlh1	111258508	TCCTCACCGTGATCAGGGTGCCCTGGT	-	Deletion	Strelka2;Vardict	2	0.2889	90	0	0	NA	exonic	Mlh1	frameshift deletion	Mlh1:NM_026810:exon5:c.434_453del:p.N145Sfs*19	9qF3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.875454545	NA	NA	ATC	frameshift	NA	NA	NA	-27
PW3322T1	chr9	118537283	PW2017tail	colon	sgMlh1	118537283	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.037	186	0	0	NA	exonic	Golga4	synonymous SNV	Golga4:NM_018748:exon10:c.G1104A:p.L368L	9qF3	chr9-7282188-124127224	2	1	1	0.66	2	NON-ABERRANT	1	0.112121212	3	0.9999999	TGC	synonymous	NA	NA	NA	NA
PW3322T1	chrX	13140502	PW2017tail	colon	sgMlh1	13140502	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	145	0	0	NA	exonic	Usp9x	synonymous SNV	Usp9x:NM_009481:exon28:c.G4179A:p.V1393V	XqA1.1	chrX-7947088-169987896	2	1	1	0.66	2	NON-ABERRANT	1	0.209090909	NA	NA	TGC	synonymous	NA	NA	NA	NA
PW3322T1	chrX	83927865	PW2017tail	colon	sgMlh1	83927865	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.142	48	0	0	NA	exonic	Dmd	frameshift deletion	Dmd:NM_007868:exon40:c.5613delA:p.K1873Rfs*2	XqC1	chrX-7947088-169987896	2	1	1	0.66	2	NON-ABERRANT	1	0.43030303	NA	NA	GAA	frameshift	AAG	8	AAGAAGAA	-1
PW3322T1	chrX	116477556	PW2017tail	colon	sgMlh1	116477556	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.394	181	0	0	NA	exonic	Cpxcr1	nonsynonymous SNV	Cpxcr1:NM_001033471:exon3:c.A163C:p.S55R	XqE1	chrX-7947088-169987896	2	1	1	0.66	2	NON-ABERRANT	1	1	NA	NA	AAG	nonsynonymous	NA	NA	NA	NA
PW3322T1	chrX	126814687	PW2017tail	colon	sgMlh1	126814687	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	324	0	0	NA	exonic	4932411N23Rik	nonsynonymous SNV	4932411N23Rik:NM_177705:exon3:c.T794C:p.V265A	XqE3	chrX-7947088-169987896	2	1	1	0.66	2	NON-ABERRANT	1	0.178787879	NA	NA	AAC	nonsynonymous	NA	NA	NA	NA
PW3322T1	chrX	143791283	PW2017tail	colon	sgMlh1	143791283	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.235	72	0	0	NA	exonic	Pak3	nonsynonymous SNV	"Pak3:NM_001195047:exon15:c.A1657G:p.I553V,Pak3:NM_008778:exon15:c.A1594G:p.I532V,Pak3:NM_001195046:exon16:c.A1702G:p.I568V,Pak3:NM_001195048:exon16:c.A1639G:p.I547V,Pak3:NM_001195049:exon18:c.A1594G:p.I532V"	XqF2	chrX-7947088-169987896	2	1	1	0.66	2	NON-ABERRANT	1	0.712121212	NA	NA	GAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	9724824	PW2017tail	colon	sgMlh1	9724824	T	-	Deletion	Mutect2;Vardict	2	0.044	143	0	0	NA	exonic	Vcpip1	frameshift deletion	Vcpip1:NM_173443:exon3:c.3321delA:p.K1107Nfs*36	1qA2	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.129411765	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3322T2	chr1	46343804	PW2017tail	colon	sgMlh1	46343804	C	T	SNV	Mutect2;Vardict	2	0.017	372	0	0	NA	exonic	Dnah7b	nonsynonymous SNV	Dnah7b:NM_001368717:exon60:c.C11135T:p.A3712V	1qC1.1	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.05	3	1.03E-09	GCC	nonsynonymous	AATGCC	12	AATGCCAATGCC	NA
PW3322T2	chr1	52799292	PW2017tail	colon	sgMlh1	52799292	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.039	117	0	0	NA	exonic	Inpp1	nonsynonymous SNV	Inpp1:NM_008384:exon2:c.A197G:p.E66G	1qC1.1	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.114705882	3	0.9827641	TTC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	66801687	PW2017tail	colon	sgMlh1	66801687	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	248	0	0	NA	exonic	Kansl1l	synonymous SNV	"Kansl1l:NM_001122738:exon2:c.A453G:p.Q151Q,Kansl1l:NM_001368830:exon2:c.A453G:p.Q151Q,Kansl1l:NM_177645:exon2:c.A453G:p.Q151Q,Kansl1l:NM_001357156:exon3:c.A453G:p.Q151Q,Kansl1l:NM_001357157:exon3:c.A453G:p.Q151Q"	1qC3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.338235294	2	4.99E-09	TTT	synonymous	NA	NA	NA	NA
PW3322T2	chr1	80543168	PW2017tail	colon	sgMlh1	80543168	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	164	0	0	NA	exonic	Dock10	nonsynonymous SNV	"Dock10:NM_001285927:exon33:c.C3598T:p.L1200F,Dock10:NM_175291:exon33:c.C3634T:p.L1212F"	1qC5	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	3	0.9955258	AGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	92937997	PW2017tail	colon	sgMlh1	92937997	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	100	0	0	NA	exonic	Capn10	nonsynonymous SNV	Capn10:NM_011796:exon2:c.T194C:p.V65A	1qD	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.270588235	2	0.9835813	GTG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	118539282	PW2017tail	colon	sgMlh1	118539282	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	284	0	0	NA	exonic	Clasp1	synonymous SNV	"Clasp1:NM_001293301:exon22:c.C2196T:p.G732G,Clasp1:NM_029709:exon22:c.C2196T:p.G732G,Clasp1:NM_001359338:exon23:c.C2223T:p.G741G,Clasp1:NM_001359340:exon23:c.C2223T:p.G741G,Clasp1:NM_001359342:exon23:c.C2304T:p.G768G,Clasp1:NM_001359346:exon23:c.C2223T:p.G741G,Clasp1:NM_001359330:exon24:c.C2331T:p.G777G,Clasp1:NM_001359336:exon24:c.C2247T:p.G749G,Clasp1:NM_001359339:exon24:c.C2331T:p.G777G,Clasp1:NM_001359341:exon24:c.C2331T:p.G777G,Clasp1:NM_001359343:exon24:c.C2286T:p.G762G,Clasp1:NM_001359345:exon24:c.C2247T:p.G749G,Clasp1:NM_001293300:exon25:c.C2355T:p.G785G,Clasp1:NM_001359329:exon25:c.C2394T:p.G798G,Clasp1:NM_001359334:exon25:c.C2394T:p.G798G,Clasp1:NM_001359337:exon25:c.C2355T:p.G785G,Clasp1:NM_001359347:exon25:c.C1125T:p.G375G,Clasp1:NM_001359328:exon26:c.C2418T:p.G806G,Clasp1:NM_001359331:exon26:c.C2418T:p.G806G,Clasp1:NM_001359335:exon26:c.C2418T:p.G806G"	1qE2.3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.205882353	2	0.9450303	GCC	synonymous	TGGGC	10	TGGGCTGGGC	NA
PW3322T2	chr1	118854561	PW2017tail	colon	sgMlh1	118854561	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.075	68	0	0	NA	exonic	Gli2	synonymous SNV	Gli2:NM_001081125:exon7:c.A930G:p.P310P	1qE2.3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.220588235	2	8.56E-06	GTG	synonymous	NA	NA	NA	NA
PW3322T2	chr1	128327951	PW2017tail	colon	sgMlh1	128327951	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	115	0	0	NA	exonic	Lct	nonsynonymous SNV	Lct:NM_001081078:exon1:c.T353A:p.L118H	1qE3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.144117647	3	0.9117565	GAG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	133659364	PW2017tail	colon	sgMlh1	133659365	TT	-	Deletion	Mutect2;Vardict	2	0.033	164	0	0	NA	exonic	Zbed6	frameshift deletion	Zbed6:NM_001166552:exon1:c.233_234del:p.K78Ifs*7	1qE4	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.097058824	NA	NA	ATT	frameshift	T	5	TTTTT	-2
PW3322T2	chr1	158251291	PW2017tail	colon	sgMlh1	158251291	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	113	0	0	NA	exonic	Brinp2	nonsynonymous SNV	Brinp2:NM_207583:exon6:c.C961A:p.L321M	1qH1	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.132352941	3	0.9498163	AGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	171593978	PW2017tail	colon	sgMlh1	171593978	G	A	SNV	Mutect2;Vardict	2	0.024	226	0	0	NA	exonic	Ly9	synonymous SNV	"Ly9:NM_001277968:exon7:c.C1374T:p.D458D,Ly9:NM_008534:exon8:c.C1704T:p.D568D"	1qH3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.070588235	3	0.9999966	TGT	synonymous	NA	NA	NA	NA
PW3322T2	chr1	173341678	PW2017tail	colon	sgMlh1	173341678	C	A	SNV	Mutect2;Vardict	2	0.031	183	0	0	NA	exonic	Cadm3	nonsynonymous SNV	Cadm3:NM_053199:exon6:c.G767T:p.G256V	1qH3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.091176471	3	0.9997688	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr1	173971516	PW2017tail	colon	sgMlh1	173971516	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	130	0	0	NA	exonic	Ifi202b	nonsynonymous SNV	"Ifi202b:NM_008327:exon5:c.G965A:p.G322E,Ifi202b:NM_011940:exon5:c.G965A:p.G322E"	1qH3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.314705882	2	0.999701	CCC	nonsynonymous	CATA	9	CATACATAC	NA
PW3322T2	chr1	174332565	PW2017tail	colon	sgMlh1	174332565	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	255	0	0	NA	exonic	Mptx1	nonsynonymous SNV	Mptx1:NM_025470:exon2:c.G436A:p.G146S	1qH3	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.076470588	3	0.9999986	GGG	nonsynonymous	G	5	GGGGG	NA
PW3322T2	chr1	188211108	PW2017tail	colon	sgMlh1	188211108	T	-	Deletion	Mutect2;Vardict	2	0.098	72	0	0	NA	exonic	Esrrg	frameshift deletion	"Esrrg:NM_011935:exon7:c.1346delT:p.L451Wfs*9,Esrrg:NM_001243792:exon8:c.1277delT:p.L428Wfs*9,Esrrg:NM_001357534:exon8:c.1277delT:p.L428Wfs*9,Esrrg:NM_001357535:exon8:c.1277delT:p.L428Wfs*9,Esrrg:NM_001357536:exon8:c.1295delT:p.L434Wfs*9"	1qH6	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.288235294	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr1	191163797	PW2017tail	colon	sgMlh1	191163797	T	-	Deletion	Strelka2;Vardict	2	0.1231	65	0	0	NA	exonic	Fam71a	frameshift deletion	Fam71a:NM_001109759:exon1:c.648delA:p.G217Afs*26	1qH6	chr1-6245696-193129618	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.362058824	NA	NA	CTT	frameshift	T	10	TTTTTTTTTT	-1
PW3322T2	chr10	21395712	PW2017tail	colon	sgMlh1	21395712	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	113	0	0	NA	exonic	Aldh8a1	nonsynonymous SNV	Aldh8a1:NM_178713:exon7:c.A1336T:p.N446Y	10qA3	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.2	2	0.6827172	CAA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr10	22067260	PW2017tail	colon	sgMlh1	22067260	T	C	SNV	Mutect2;Vardict	2	0.021	299	0	0	NA	exonic	4930444G20Rik	nonsynonymous SNV	4930444G20Rik:NM_053264:exon1:c.A820G:p.I274V	10qA3	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.061764706	3	1.79E-08	ATA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr10	69976074	PW2017tail	colon	sgMlh1	69976074	A	-	Deletion	Strelka2;Vardict	2	0.0811	74	0	0	NA	exonic	Ank3	frameshift deletion	"Ank3:NM_170730:exon6:c.789delA:p.I266Sfs*13,Ank3:NM_009670:exon8:c.969delA:p.I326Sfs*13,Ank3:NM_170687:exon8:c.969delA:p.I326Sfs*13,Ank3:NM_170728:exon29:c.3453delA:p.I1154Sfs*13,Ank3:NM_170729:exon29:c.3453delA:p.I1154Sfs*13,Ank3:NM_170689:exon30:c.3516delA:p.I1175Sfs*13,Ank3:NM_170690:exon30:c.3507delA:p.I1172Sfs*13,Ank3:NM_146005:exon31:c.3570delA:p.I1193Sfs*13,Ank3:NM_170688:exon31:c.3570delA:p.I1193Sfs*13"	10qB5.3	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.238529412	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3322T2	chr10	112092469	PW2017tail	colon	sgMlh1	112092469	A	-	Deletion	Mutect2;Vardict	2	0.056	172	0	0	NA	exonic	Glipr1l2	frameshift deletion	"Glipr1l2:NM_001347157:exon2:c.268delA:p.K91Nfs*9,Glipr1l2:NM_026223:exon2:c.268delA:p.K91Nfs*9"	10qD2	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.164705882	NA	NA	GAA	frameshift	G	5	GGGGG	-1
PW3322T2	chr10	127715681	PW2017tail	colon	sgMlh1	127715681	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.087	50	0	0	NA	exonic	Myo1a	nonsynonymous SNV	Myo1a:NM_001081219:exon19:c.C2105T:p.T702I	10qD3	chr10-5218416-128943022	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.255882353	2	0.8391648	ACC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	3291424	PW2017tail	colon	sgMlh1	3291424	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.066	82	0	0	NA	exonic	Patz1	nonsynonymous SNV	"Patz1:NM_001253690:exon1:c.A811G:p.R271G,Patz1:NM_001253691:exon1:c.A811G:p.R271G,Patz1:NM_019574:exon1:c.A811G:p.R271G"	11qA1	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.194117647	2	0.5750541	CAG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	21332471	PW2017tail	colon	sgMlh1	21332471	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	157	0	0	NA	exonic	Ugp2	frameshift deletion	"Ugp2:NM_001290634:exon5:c.487delA:p.I163Yfs*9,Ugp2:NM_139297:exon5:c.520delA:p.I174Yfs*9"	11qA3.1	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.320588235	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3322T2	chr11	61715085	PW2017tail	colon	sgMlh1	61715085	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	181	0	0	NA	exonic	Slc5a10	nonsynonymous SNV	"Slc5a10:NM_001382268:exon5:c.C404T:p.T135M,Slc5a10:NM_001033227:exon6:c.C404T:p.T135M"	11qB2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	3	0.9576327	CGT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	62525252	PW2017tail	colon	sgMlh1	62525252	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	138	0	0	NA	exonic	Cenpv	nonsynonymous SNV	Cenpv:NM_028448:exon5:c.C670T:p.R224W	11qB2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	3	0.9896403	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	69557271	PW2017tail	colon	sgMlh1	69557271	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	113	0	0	NA	exonic	Efnb3	nonsynonymous SNV	Efnb3:NM_007911:exon2:c.T344C:p.I115T	11qB3	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.173529412	3	0.6646811	GAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	72180525	PW2017tail	colon	sgMlh1	72180525	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.161	63	0	0	NA	exonic	4933427D14Rik	nonsynonymous SNV	"4933427D14Rik:NM_001361564:exon8:c.G1393A:p.G465S,4933427D14Rik:NM_028963:exon8:c.G1393A:p.G465S"	11qB4	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.473529412	2	0.7947103	CCA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr11	77137612	PW2017tail	colon	sgMlh1	77137613	CT	-	Deletion	Mutect2;Vardict	2	0.02	367	0	0	NA	exonic	Efcab5	frameshift deletion	Efcab5:NM_176965:exon5:c.1299_1300del:p.G434Vfs*67	11qB5	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.058823529	NA	NA	CCT	frameshift	NA	NA	NA	-2
PW3322T2	chr11	120071462	PW2017tail	colon	sgMlh1	120071462	G	-	Deletion	Strelka2;Vardict	2	0.0833	48	0	0	NA	exonic	Cep131	frameshift deletion	Cep131:NM_009734:exon13:c.1496delC:p.P499Lfs*15	11qE2	chr11-3133205-120861039	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.245	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr12	25036594	PW2017tail	colon	sgMlh1	25036594	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.44	117	0	0	NA	exonic	Kidins220	nonsynonymous SNV	Kidins220:NM_001081378:exon23:c.C3152T:p.T1051M	12qA1.3	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.647058824	1	0.9999837	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr12	35144326	PW2017tail	colon	sgMlh1	35144326	A	-	Deletion	Mutect2;Vardict	2	0.098	138	0	0	NA	exonic	Snx13	frameshift deletion	Snx13:NM_001014973:exon26:c.2867delA:p.R958delinsGDTPTCEAGVHFV	12qA3	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.288235294	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr12	40214019	PW2017tail	colon	sgMlh1	40214019	T	-	Deletion	Strelka2;Vardict	2	0.0656	122	0	0	NA	exonic	Ifrd1	stopgain	Ifrd1:NM_013562:exon5:c.520delA:p.I174fs*0	12qB1	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.192941176	NA	NA	ATT	nonsynonymous	T	8	TTTTTTTT	-1
PW3322T2	chr12	72486309	PW2017tail	colon	sgMlh1	72486309	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	178	0	0	NA	exonic	Lrrc9	nonsynonymous SNV	"Lrrc9:NM_001142728:exon22:c.C2951T:p.A984V,Lrrc9:NM_030070:exon22:c.C2954T:p.A985V"	12qC3	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.102941176	3	0.9991996	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr12	116233327	PW2017tail	colon	sgMlh1	116233327	T	-	Deletion	Strelka2;Vardict	2	0.0744	121	0	0	NA	exonic	Wdr60	frameshift deletion	Wdr60:NM_146039:exon9:c.1409delA:p.N470Ifs*22	12qF2	chr12-3252726-118177671	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.218823529	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW3322T2	chr13	38025563	PW2017tail	colon	sgMlh1	38025563	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	155	0	0	NA	exonic	Cage1	nonsynonymous SNV	Cage1:NM_027724:exon4:c.G437A:p.S146N	13qA3.3	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.120588235	3	0.9925435	ACT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr13	54724302	PW2017tail	colon	sgMlh1	54724302	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	74	0	0	NA	exonic	Cdhr2	nonsynonymous SNV	Cdhr2:NM_001033364:exon17:c.C1978T:p.R660C	13qB1	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.408823529	2	0.9827047	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr13	55156801	PW2017tail	colon	sgMlh1	55156801	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.148	165	0	0	NA	exonic	Fgfr4	nonsynonymous SNV	Fgfr4:NM_008011:exon5:c.T455C:p.M152T	13qB1	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.435294118	2	0.984165	ATG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr13	76157286	PW2017tail	colon	sgMlh1	76157286	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.079	119	0	0	NA	exonic	Ttc37	synonymous SNV	Ttc37:NM_001081352:exon38:c.C3837T:p.C1279C	13qC1	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.232352941	2	0.9357016	GCC	synonymous	NA	NA	NA	NA
PW3322T2	chr13	113663343	PW2017tail	colon	sgMlh1	113663343	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	95	0	0	NA	exonic	Hspb3	synonymous SNV	Hspb3:NM_019960:exon1:c.C150T:p.G50G	13qD2.2	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.161764706	3	0.7555856	CGC	synonymous	NA	NA	NA	NA
PW3322T2	chr13	116938769	PW2017tail	colon	sgMlh1	116938769	G	A	SNV	Mutect2;Vardict	2	0.026	228	0	0	NA	exonic	Parp8	synonymous SNV	Parp8:NM_001081009:exon4:c.C159T:p.S53S	13qD2.3	chr13-3556909-119495179	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.076470588	3	0.9999941	CGG	synonymous	NA	NA	NA	NA
PW3322T2	chr14	31044639	PW2017tail	colon	sgMlh1	31044639	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.097	63	0	0	NA	exonic	Pbrm1	frameshift deletion	"Pbrm1:NM_001081251:exon10:c.829delA:p.I279Yfs*3,Pbrm1:NM_001359854:exon11:c.883delA:p.I297Yfs*3,Pbrm1:NM_001359855:exon11:c.883delA:p.I297Yfs*3,Pbrm1:NM_001359856:exon11:c.892delA:p.I300Yfs*3,Pbrm1:NM_001359857:exon11:c.892delA:p.I300Yfs*3,Pbrm1:NM_001359858:exon11:c.892delA:p.I300Yfs*3"	14qB	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.285294118	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr14	61207748	PW2017tail	colon	sgMlh1	61207748	A	-	Deletion	Strelka2;Vardict	2	0.1011	188	0	0	NA	exonic	Sacs	frameshift deletion	Sacs:NM_015788:exon10:c.7242delA:p.K2416Nfs*2	14qD1	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.297352941	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr14	79164179	PW2017tail	colon	sgMlh1	79164179	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	106	0	0	NA	exonic	Vwa8	synonymous SNV	Vwa8:NM_027906:exon40:c.G4953A:p.V1651V	14qD3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.179411765	3	0.58514	TGC	synonymous	NA	NA	NA	NA
PW3322T2	chr14	84447865	PW2017tail	colon	sgMlh1	84447865	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.082	98	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.G1771A:p.A591T	14qD3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.241176471	2	0.9316226	AGC	nonsynonymous	AGCTG	10	AGCTGAGCTG	NA
PW3322T2	chr14	84477592	PW2017tail	colon	sgMlh1	84477592	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	117	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon3:c.A2696G:p.D899G	14qD3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.226470588	2	0.09130477	GAC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr14	101640435	PW2017tail	colon	sgMlh1	101640435	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	60	0	0	NA	exonic	Commd6	nonsynonymous SNV	"Commd6:NM_001033132:exon1:c.T2C:p.M1T,Commd6:NM_001168592:exon1:c.T2C:p.M1T"	14qE2.3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.214705882	2	0.6902074	CAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr14	103298796	PW2017tail	colon	sgMlh1	103298796	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.098	70	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon5:c.G816T:p.Q272H	14qE2.3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.288235294	2	0.9688797	ACT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr14	105892963	PW2017tail	colon	sgMlh1	105892963	A	-	Deletion	Mutect2;Vardict	2	0.04	211	0	0	NA	exonic	Spry2	frameshift deletion	Spry2:NM_011897:exon2:c.788delT:p.L263Cfs*23	14qE2.3	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr14	111679973	PW2017tail	colon	sgMlh1	111679973	G	A	SNV	Mutect2;Vardict	2	0.042	97	0	0	NA	exonic	Slitrk5	nonsynonymous SNV	"Slitrk5:NM_001378768:exon2:c.G1103A:p.R368H,Slitrk5:NM_001378769:exon2:c.G1028A:p.R343H,Slitrk5:NM_001378770:exon2:c.G1028A:p.R343H,Slitrk5:NM_198865:exon2:c.G1028A:p.R343H"	14qE4	chr14-3072210-123592557	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.123529412	3	0.9502352	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr15	9465839	PW2017tail	colon	sgMlh1	9465839	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.035	218	0	0	NA	exonic	Capsl	nonsynonymous SNV	Capsl:NM_029341:exon5:c.A610G:p.T204A	15qA1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.102941176	3	0.999836	GAC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr15	19013473	PW2017tail	colon	sgMlh1	19013473	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	91	0	0	NA	exonic	Cdh10	stopgain	"Cdh10:NM_001316758:exon12:c.G2158T:p.E720X,Cdh10:NM_009865:exon12:c.G2158T:p.E720X"	15qA2	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.173529412	3	0.6376001	AGA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr15	75903326	PW2017tail	colon	sgMlh1	75903326	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	103	0	0	NA	exonic	Eef1d	synonymous SNV	Eef1d:NM_029663:exon3:c.T483C:p.H161H	15qD3	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.123529412	3	0.9580092	CAT	synonymous	NA	NA	NA	NA
PW3322T2	chr15	78292810	PW2017tail	colon	sgMlh1	78292810	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	123	0	0	NA	exonic	Csf2rb2	synonymous SNV	Csf2rb2:NM_007781:exon5:c.G459T:p.L153L	15qE1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.370588235	2	0.999717	GCA	synonymous	NA	NA	NA	NA
PW3322T2	chr15	79739788	PW2017tail	colon	sgMlh1	79739788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.143	43	0	0	NA	exonic	Sun2	nonsynonymous SNV	"Sun2:NM_001205345:exon2:c.A58G:p.S20G,Sun2:NM_001205346:exon2:c.A58G:p.S20G,Sun2:NM_194342:exon2:c.A58G:p.S20G"	15qE1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.420588235	2	0.9392641	CTG	nonsynonymous	CTG	13	CTGCTGCTGCTGC	NA
PW3322T2	chr15	82791727	PW2017tail	colon	sgMlh1	82791727	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	189	0	0	NA	exonic	Cyp2d26	synonymous SNV	Cyp2d26:NM_029562:exon5:c.C783T:p.H261H	15qE1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.138235294	3	0.9870163	CGT	synonymous	NA	NA	NA	NA
PW3322T2	chr15	84804877	PW2017tail	colon	sgMlh1	84804877	G	T	SNV	Mutect2;Vardict	2	0.071	54	0	0	NA	exonic	Phf21b	synonymous SNV	"Phf21b:NM_001081166:exon4:c.C447A:p.A149A,Phf21b:NM_001356573:exon4:c.C411A:p.A137A"	15qE2	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.208823529	2	0.6363921	AGG	synonymous	NA	NA	NA	NA
PW3322T2	chr15	94351598	PW2017tail	colon	sgMlh1	94351598	T	-	Deletion	Strelka2;Vardict	2	0.075	80	0	0	NA	exonic	Adamts20	frameshift deletion	Adamts20:NM_001164786:exon10:c.1537delA:p.T513Lfs*37	15qE3	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.220588235	NA	NA	GTT	frameshift	T	10	TTTTTTTTTT	-1
PW3322T2	chr15	101202988	PW2017tail	colon	sgMlh1	101202988	A	-	Deletion	Strelka2;Vardict	2	0.25	76	0	0	NA	exonic	Acvr1b	frameshift deletion	Acvr1b:NM_007395:exon6:c.1030delA:p.N346Mfs*21	15qF1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.735294118	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3322T2	chr15	101210804	PW2017tail	colon	sgMlh1	101210804	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	106	0	0	NA	exonic	Acvr1b	nonsynonymous SNV	Acvr1b:NM_007395:exon9:c.C1460A:p.A487D	15qF1	chr15-4091145-103525164	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.152941176	3	0.8461304	GCT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr16	16422792	PW2017tail	colon	sgMlh1	16422792	-	G	Insertion	Mutect2;Strelka2;Vardict	3	0.061	155	0	0	NA	exonic	Fgd4	frameshift insertion	"Fgd4:NM_001301817:exon17:c.2434dupC:p.L812Pfs*7,Fgd4:NM_001301818:exon17:c.2071dupC:p.L691Pfs*7,Fgd4:NM_139232:exon17:c.2071dupC:p.L691Pfs*7"	16qA3	chr16-4294560-96819699	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.179411765	NA	NA	GAG	frameshift	NA	NA	NA	1
PW3322T2	chr16	23155444	PW2017tail	colon	sgMlh1	23155444	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	63	0	0	NA	exonic	Adipoq	nonsynonymous SNV	Adipoq:NM_009605:exon2:c.G220A:p.A74T	16qB1	chr16-4294560-96819699	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.326470588	2	0.9849619	TGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr16	32843268	PW2017tail	colon	sgMlh1	32843268	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.097	72	0	0	NA	exonic	Rubcn	nonsynonymous SNV	"Rubcn:NM_001200038:exon7:c.G997T:p.A333S,Rubcn:NM_001374776:exon7:c.G814T:p.A272S,Rubcn:NM_172615:exon7:c.G997T:p.A333S"	16qB3	chr16-4294560-96819699	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.285294118	2	0.9688468	GCT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr16	93845328	PW2017tail	colon	sgMlh1	93845328	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	210	0	0	NA	exonic	Morc3	nonsynonymous SNV	Morc3:NM_001045529:exon4:c.T434C:p.V145A	16qC4	chr16-4294560-96819699	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.326470588	2	0.9999994	GTC	nonsynonymous	GTT	8	GTTGTTGT	NA
PW3322T2	chr17	6029822	PW2017tail	colon	sgMlh1	6029822	C	-	Deletion	Strelka2;Vardict	2	0.0864	81	0	0	NA	exonic	Synj2	frameshift deletion	"Synj2:NM_011523:exon22:c.3070delC:p.P1026Lfs*4,Synj2:NM_001113353:exon23:c.3325delC:p.P1111Lfs*4"	17qA1	chr17-3477157-94727405	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.254117647	NA	NA	ACC	frameshift	C	8	CCCCCCCC	-1
PW3322T2	chr17	32537164	PW2017tail	colon	sgMlh1	32537164	A	-	Deletion	Strelka2;Vardict	2	0.1007	149	0	0	NA	exonic	Cyp4f16	frameshift deletion	"Cyp4f16:NM_001356303:exon2:c.166delA:p.N58Tfs*8,Cyp4f16:NM_024442:exon2:c.166delA:p.N58Tfs*8"	17qB1	chr17-3477157-94727405	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.296176471	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3322T2	chr17	56779968	PW2017tail	colon	sgMlh1	56779968	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.085	79	0	0	NA	exonic	Rfx2	nonsynonymous SNV	"Rfx2:NM_009056:exon14:c.G1681T:p.V561L,Rfx2:NM_027787:exon15:c.G1756T:p.V586L"	17qD	chr17-3477157-94727405	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.25	2	0.9190516	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr18	20283550	PW2017tail	colon	sgMlh1	20283550	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	462	0	0	NA	exonic	Dsg1c	nonsynonymous SNV	Dsg1c:NM_181680:exon15:c.A2507G:p.E836G	18qA2	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.067647059	3	1.00E-09	GAG	nonsynonymous	AG	8	AGAGAGAG	NA
PW3322T2	chr18	34312283	PW2017tail	colon	sgMlh1	34312320	GCTCAAGTCTGCCATCCCTTCACGTTAGGAAACAGAAA	-	Deletion	Strelka2;Vardict	2	0.1975	162	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2054_2091del:p.S687Rfs*2,Apc:NM_007462:exon16:c.2231_2268del:p.S746Rfs*2,Apc:NM_001360980:exon17:c.2285_2322del:p.S764Rfs*2"	18qB1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.580882353	NA	NA	GGC	frameshift	NA	NA	NA	-38
PW3322T2	chr18	34312304	PW2017tail	colon	sgMlh1	34312304	A	-	Deletion	Strelka2;Vardict	2	0.1583	120	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2075delA:p.H692Pfs*7,Apc:NM_007462:exon16:c.2252delA:p.H751Pfs*7,Apc:NM_001360980:exon17:c.2306delA:p.H769Pfs*7"	18qB1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.465588235	NA	NA	CAC	frameshift	NA	NA	NA	-1
PW3322T2	chr18	34312365	PW2017tail	colon	sgMlh1	34312365	-	GACAACATT	Insertion	Strelka2;Vardict	2	0.1457	247	0	0	NA	exonic	Apc	nonframeshift insertion	"Apc:NM_001360979:exon16:c.2136_2137insGACAACATT:p.N717_L718insIDN,Apc:NM_007462:exon16:c.2313_2314insGACAACATT:p.N776_L777insIDN,Apc:NM_001360980:exon17:c.2367_2368insGACAACATT:p.N794_L795insIDN"	18qB1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.428529412	NA	NA	TCG	inframe	NA	NA	NA	9
PW3322T2	chr18	37963377	PW2017tail	colon	sgMlh1	37963377	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.113	100	0	0	NA	exonic	Fchsd1	synonymous SNV	Fchsd1:NM_175684:exon14:c.T1350C:p.A450A	18qB3	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	2	0.9990735	CAG	synonymous	NA	NA	NA	NA
PW3322T2	chr18	62520780	PW2017tail	colon	sgMlh1	62520780	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	121	0	0	NA	exonic	Fbxo38	nonsynonymous SNV	"Fbxo38:NM_001361088:exon11:c.G1310A:p.C437Y,Fbxo38:NM_001361090:exon11:c.G1310A:p.C437Y,Fbxo38:NM_134136:exon11:c.G1310A:p.C437Y,Fbxo38:NM_001361089:exon12:c.G68A:p.C23Y,Fbxo38:NM_001361091:exon12:c.G68A:p.C23Y"	18qE1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.182352941	3	0.552273	GCA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr18	63019361	PW2017tail	colon	sgMlh1	63019361	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	227	0	0	NA	exonic	Piezo2	synonymous SNV	Piezo2:NM_001039485:exon50:c.C7659T:p.G2553G	18qE1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.105882353	3	0.9998414	CGC	synonymous	ATTGC	10	ATTGCATTGC	NA
PW3322T2	chr18	65624013	PW2017tail	colon	sgMlh1	65624013	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	125	0	0	NA	exonic	Zfp532	nonsynonymous SNV	"Zfp532:NM_001361051:exon2:c.G1016A:p.S339N,Zfp532:NM_001361052:exon2:c.G1016A:p.S339N,Zfp532:NM_001361053:exon3:c.G1016A:p.S339N,Zfp532:NM_207255:exon3:c.G1016A:p.S339N"	18qE1	chr18-3281580-88974479	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	2	0.99656	AGT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr19	4282265	PW2017tail	colon	sgMlh1	4282265	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	84	0	0	NA	exonic	Ankrd13d	frameshift deletion	Ankrd13d:NM_026720:exon2:c.130delC:p.L44Wfs*4	19qA	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.45	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr19	12120252	PW2017tail	colon	sgMlh1	12120252	C	A	SNV	Mutect2;Vardict	2	0.037	110	0	0	NA	exonic	Olfr76	nonsynonymous SNV	Olfr76:NM_146682:exon1:c.G423T:p.Q141H	19qA	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.108823529	3	0.9840077	CCT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr19	12919410	PW2017tail	colon	sgMlh1	12919410	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	185	0	0	NA	exonic	Olfr1448	stopgain	Olfr1448:NM_146701:exon1:c.A898T:p.K300X	19qA	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.214705882	2	0.9321055	TTA	nonsynonymous	T	5	TTTTT	NA
PW3322T2	chr19	13827796	PW2017tail	colon	sgMlh1	13827796	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	200	0	0	NA	exonic	Olfr1500	nonsynonymous SNV	Olfr1500:NM_001011831:exon1:c.T599A:p.I200N	19qA	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.161764706	3	0.09138279	AAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr19	23350756	PW2017tail	colon	sgMlh1	23350756	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	145	0	0	NA	exonic	Mamdc2	nonsynonymous SNV	Mamdc2:NM_174857:exon9:c.A1247G:p.Y416C	19qB	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.220588235	2	0.920652	GTA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr19	34972937	PW2017tail	colon	sgMlh1	34972937	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.114	117	0	0	NA	exonic	Kif20b	frameshift deletion	"Kif20b:NM_001362434:exon30:c.4912delA:p.R1640Efs*25,Kif20b:NM_183046:exon30:c.5032delA:p.R1680Efs*25"	19qC1	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.335294118	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr19	45512710	PW2017tail	colon	sgMlh1	45512710	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	189	0	0	NA	exonic	Btrc	nonsynonymous SNV	"Btrc:NM_001286466:exon6:c.C143T:p.A48V,Btrc:NM_001360127:exon6:c.C731T:p.A244V,Btrc:NM_009771:exon6:c.C701T:p.A234V,Btrc:NM_001037758:exon7:c.C809T:p.A270V,Btrc:NM_001286465:exon7:c.C809T:p.A270V,Btrc:NM_001360122:exon7:c.C773T:p.A258V,Btrc:NM_001360126:exon7:c.C743T:p.A248V,Btrc:NM_001360120:exon8:c.C851T:p.A284V,Btrc:NM_001360124:exon9:c.C755T:p.A252V"	19qC3	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.102941176	3	0.9994824	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr19	45956697	PW2017tail	colon	sgMlh1	45956697	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	154	0	0	NA	exonic	Armh3	frameshift deletion	Armh3:NM_198296:exon11:c.814delT:p.S272Lfs*2	19qC3	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.197058824	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr19	59301651	PW2017tail	colon	sgMlh1	59301651	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	102	0	0	NA	exonic	Pdzd8	nonsynonymous SNV	Pdzd8:NM_001033222:exon5:c.G1316A:p.R439H	19qD3	chr19-3279444-59322783	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.185294118	3	6.96E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	29147432	PW2017tail	colon	sgMlh1	29147432	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	138	0	0	NA	exonic	Setx	nonsynonymous SNV	Setx:NM_198033:exon10:c.G3928A:p.A1310T	2qB	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.179411765	3	0.6049423	CGC	nonsynonymous	C	5	CCCCC	NA
PW3322T2	chr2	34874555	PW2017tail	colon	sgMlh1	34874555	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.048	87	0	0	NA	exonic	Cutal	synonymous SNV	"Cutal:NM_001308024:exon1:c.A30G:p.P10P,Cutal:NM_030021:exon1:c.A30G:p.P10P"	2qB	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.141176471	3	0.8708185	CAC	synonymous	NA	NA	NA	NA
PW3322T2	chr2	35153231	PW2017tail	colon	sgMlh1	35153231	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	62	0	0	NA	exonic	Cntrl	frameshift deletion	"Cntrl:NM_001379275:exon14:c.2071delC:p.P692Lfs*3,Cntrl:NM_001379274:exon24:c.3730delC:p.P1245Lfs*3,Cntrl:NM_012018:exon24:c.3727delC:p.P1244Lfs*3"	2qB	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.432352941	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3322T2	chr2	40750954	PW2017tail	colon	sgMlh1	40750954	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.077	122	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon67:c.T10477C:p.W3493R	2qB	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.226470588	2	9.66E-09	CAG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	48898564	PW2017tail	colon	sgMlh1	48898564	A	-	Deletion	Strelka2;Vardict	2	0.1279	172	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.376176471	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3322T2	chr2	62357003	PW2017tail	colon	sgMlh1	62357003	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.1	106	0	0	NA	exonic	Dpp4	synonymous SNV	"Dpp4:NM_001159543:exon17:c.C1407T:p.P469P,Dpp4:NM_010074:exon17:c.C1407T:p.P469P"	2qC1.3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.294117647	2	0.9961309	CGG	synonymous	NA	NA	NA	NA
PW3322T2	chr2	65763737	PW2017tail	colon	sgMlh1	65763737	C	T	SNV	Mutect2;Vardict	2	0.027	277	0	0	NA	exonic	Scn2a	synonymous SNV	"Scn2a:NM_001099298:exon27:c.C4929T:p.G1643G,Scn2a:NM_001346679:exon27:c.C4929T:p.G1643G,Scn2a:NM_001346680:exon27:c.C4929T:p.G1643G"	2qC1.3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.079411765	3	0.9999993	GCG	synonymous	NA	NA	NA	NA
PW3322T2	chr2	71825511	PW2017tail	colon	sgMlh1	71825511	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.056	122	0	0	NA	exonic	Itga6	frameshift deletion	"Itga6:NM_001277970:exon6:c.778delT:p.S261Hfs*28,Itga6:NM_008397:exon6:c.778delT:p.S261Hfs*28"	2qC3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.164705882	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3322T2	chr2	76786503	PW2017tail	colon	sgMlh1	76786503	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	160	0	0	NA	exonic	Ttn	nonsynonymous SNV	"Ttn:NM_028004:exon101:c.G24424A:p.A8142T,Ttn:NM_011652:exon222:c.G44167A:p.A14723T,Ttn:NM_001385708:exon259:c.G49999A:p.A16667T"	2qC3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.376470588	2	0.9999302	GCA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	86171377	PW2017tail	colon	sgMlh1	86171377	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	191	0	0	NA	exonic	Olfr1044	nonsynonymous SNV	Olfr1044:NM_147011:exon1:c.G439A:p.A147T	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.167647059	3	0.8391475	GCA	nonsynonymous	G	5	GGGGG	NA
PW3322T2	chr2	86508758	PW2017tail	colon	sgMlh1	86508758	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	244	0	0	NA	exonic	Olfr1076	nonsynonymous SNV	Olfr1076:NM_146406:exon1:c.C298A:p.Q100K	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	3	0.9996668	CCA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	87544749	PW2017tail	colon	sgMlh1	87544749	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	272	0	0	NA	exonic	Olfr1128	nonsynonymous SNV	Olfr1128:NM_146349:exon1:c.A794G:p.Y265C	2qD	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.232352941	2	0.9980002	GTA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	89296954	PW2017tail	colon	sgMlh1	89296954	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	159	0	0	NA	exonic	Olfr1230	frameshift deletion	Olfr1230:NM_146789:exon1:c.315delT:p.F105Lfs*3	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.176470588	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr2	89630481	PW2017tail	colon	sgMlh1	89630481	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	328	0	0	NA	exonic	Olfr1249	nonsynonymous SNV	Olfr1249:NM_001011796:exon1:c.G416A:p.C139Y	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	2	3.87E-09	ACA	nonsynonymous	ATAC	8	ATACATAC	NA
PW3322T2	chr2	90708128	PW2017tail	colon	sgMlh1	90708136	CATAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.073	194	0	0	NA	exonic	Nup160	frameshift deletion	Nup160:NM_021512:exon20:c.2274_2277del:p.E759Lfs*10	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.214705882	NA	NA	TCA	frameshift	T	7	TTTTTTT	-9
PW3322T2	chr2	91068560	PW2017tail	colon	sgMlh1	91068560	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.133	41	0	0	NA	exonic	Slc39a13	frameshift deletion	"Slc39a13:NM_001290765:exon2:c.172delG:p.A58Lfs*2,Slc39a13:NM_026721:exon2:c.172delG:p.A58Lfs*2"	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.391176471	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3322T2	chr2	91620011	PW2017tail	colon	sgMlh1	91620011	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	153	0	0	NA	exonic	Ckap5	synonymous SNV	"Ckap5:NM_029437:exon43:c.G5823A:p.L1941L,Ckap5:NM_001165989:exon44:c.G5886A:p.L1962L"	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.238235294	2	0.9801547	TGC	synonymous	NA	NA	NA	NA
PW3322T2	chr2	91931373	PW2017tail	colon	sgMlh1	91931373	T	-	Deletion	Strelka2;Vardict	2	0.1471	68	0	0	NA	exonic	Mdk	frameshift deletion	"Mdk:NM_001012335:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001012336:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291481:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_001291483:exon2:c.75delA:p.E26Rfs*2,Mdk:NM_010784:exon2:c.75delA:p.E26Rfs*2"	2qE1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.432647059	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW3322T2	chr2	119331111	PW2017tail	colon	sgMlh1	119331111	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.112	72	0	0	NA	exonic	Dll4	frameshift deletion	Dll4:NM_019454:exon8:c.1173delC:p.N394Tfs*10	2qE5	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.329411765	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3322T2	chr2	125839423	PW2017tail	colon	sgMlh1	125839423	A	-	Deletion	Mutect2;Vardict	2	0.072	132	0	0	NA	exonic	Cops2	frameshift deletion	"Cops2:NM_001285513:exon7:c.405delT:p.F135Lfs*18,Cops2:NM_001285507:exon8:c.798delT:p.F266Lfs*18,Cops2:NM_001285512:exon8:c.405delT:p.F135Lfs*18,Cops2:NM_009939:exon8:c.777delT:p.F259Lfs*18"	2qF1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.211764706	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr2	130393642	PW2017tail	colon	sgMlh1	130393642	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.028	189	0	0	NA	exonic	Cpxm1	nonsynonymous SNV	Cpxm1:NM_019696:exon11:c.C1429T:p.R477C	2qF1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.082352941	3	0.9999215	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	130730834	PW2017tail	colon	sgMlh1	130730834	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	124	0	0	NA	exonic	4930402H24Rik	nonsynonymous SNV	"4930402H24Rik:NM_001311147:exon28:c.C2177T:p.A726V,4930402H24Rik:NM_029432:exon28:c.C2570T:p.A857V"	2qF1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.252941176	2	0.982558	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	135967952	PW2017tail	colon	sgMlh1	135967952	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.026	261	0	0	NA	exonic	Plcb4	nonsynonymous SNV	"Plcb4:NM_001355154:exon21:c.G1789A:p.E597K,Plcb4:NM_001355156:exon21:c.G985A:p.E329K,Plcb4:NM_001355153:exon22:c.G1789A:p.E597K,Plcb4:NM_013829:exon22:c.G1789A:p.E597K,Plcb4:NM_001355155:exon23:c.G1825A:p.E609K"	2qF3	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.076470588	3	0.999999	CGA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	152999351	PW2017tail	colon	sgMlh1	152999351	A	-	Deletion	Mutect2;Vardict	2	0.083	92	0	0	NA	exonic	Ttll9	frameshift deletion	"Ttll9:NM_001355717:exon9:c.681delA:p.K229Rfs*43,Ttll9:NM_001355719:exon10:c.681delA:p.K229Rfs*43,Ttll9:NM_001083618:exon11:c.867delA:p.K291Rfs*43,Ttll9:NM_001355720:exon11:c.585delA:p.K197Rfs*43,Ttll9:NM_029064:exon11:c.867delA:p.K291Rfs*43"	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.244117647	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr2	153399446	PW2017tail	colon	sgMlh1	153399446	G	-	Deletion	Strelka2;Vardict	2	0.1379	58	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.405588235	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3322T2	chr2	155202236	PW2017tail	colon	sgMlh1	155202236	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.059	154	0	0	NA	exonic	Itch	nonsynonymous SNV	"Itch:NM_008395:exon15:c.G1460A:p.R487Q,Itch:NM_001243712:exon16:c.G1460A:p.R487Q"	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.173529412	3	0.7122808	CGG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	157819537	PW2017tail	colon	sgMlh1	157819537	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.102	71	0	0	NA	exonic	Ctnnbl1	nonsynonymous SNV	Ctnnbl1:NM_025680:exon10:c.G966A:p.M322I	2qH1	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.3	2	0.9799222	TGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr2	181202340	PW2017tail	colon	sgMlh1	181202340	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	72	0	0	NA	exonic	Ptk6	nonsynonymous SNV	Ptk6:NM_009184:exon1:c.G165T:p.K55N	2qH4	chr2-4930918-181684255	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.217647059	2	0.7461886	CCT	nonsynonymous	GCCTT	10	GCCTTGCCTT	NA
PW3322T2	chr3	6620176	PW2017tail	colon	sgMlh1	6620176	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	100	0	0	NA	exonic	1700008P02Rik	nonsynonymous SNV	1700008P02Rik:NM_027048:exon1:c.C217A:p.P73T	3qA1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.158823529	3	0.7903249	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr3	10347218	PW2017tail	colon	sgMlh1	10347218	A	-	Deletion	Strelka2;Vardict	2	0.1463	41	0	0	NA	exonic	Zfand1	frameshift deletion	Zfand1:NM_001331014:exon3:c.16delT:p.C6Vfs*3	3qA1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.430294118	NA	NA	CAA	frameshift	A	12	AAAAAAAAAAAA	-1
PW3322T2	chr3	54370837	PW2017tail	colon	sgMlh1	54370837	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.14	117	0	0	NA	exonic	Postn	nonsynonymous SNV	"Postn:NM_001198765:exon7:c.G766A:p.A256T,Postn:NM_001198766:exon7:c.G766A:p.A256T,Postn:NM_001313898:exon7:c.G766A:p.A256T,Postn:NM_001313899:exon7:c.G766A:p.A256T,Postn:NM_015784:exon7:c.G766A:p.A256T,Postn:NM_001368678:exon8:c.G766A:p.A256T"	3qC	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.411764706	2	0.9939378	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr3	62595001	PW2017tail	colon	sgMlh1	62595001	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	210	0	0	NA	exonic	Gpr149	nonsynonymous SNV	"Gpr149:NM_001356525:exon3:c.A1433G:p.D478G,Gpr149:NM_177346:exon3:c.A1433G:p.D478G"	3qE1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	3	0.9989941	GTC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr3	70027895	PW2017tail	colon	sgMlh1	70027895	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	110	0	0	NA	exonic	Otol1	nonsynonymous SNV	Otol1:NM_001018031:exon5:c.C1219T:p.R407W	3qE2	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.320588235	2	0.9992156	TCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr3	90181954	PW2017tail	colon	sgMlh1	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.436	65	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.641176471	1	0.9936119	CGG	synonymous	NA	NA	NA	NA
PW3322T2	chr3	92022744	PW2017tail	colon	sgMlh1	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.455	74	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.669117647	1	0.999271	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr3	106735646	PW2017tail	colon	sgMlh1	106735646	A	-	Deletion	Mutect2;Vardict	2	0.06	142	0	0	NA	exonic	Lrif1	frameshift deletion	"Lrif1:NM_001039478:exon3:c.572delA:p.G193Afs*2,Lrif1:NM_028081:exon3:c.512delA:p.G173Afs*2,Lrif1:NM_001039488:exon4:c.2066delA:p.G691Afs*2,Lrif1:NM_001286685:exon5:c.512delA:p.G173Afs*2"	3qF2.3	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.176470588	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr3	122011563	PW2017tail	colon	sgMlh1	122011563	T	-	Deletion	Mutect2;Vardict	2	0.068	168	0	0	NA	exonic	Arhgap29	frameshift deletion	"Arhgap29:NM_001356524:exon21:c.2800delT:p.S936Lfs*17,Arhgap29:NM_172525:exon21:c.2800delT:p.S936Lfs*17"	3qG1	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.2	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr3	132727128	PW2017tail	colon	sgMlh1	132727128	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	199	0	0	NA	exonic	Tbck	nonsynonymous SNV	Tbck:NM_001163455:exon14:c.G1298T:p.R433M	3qG3	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.505882353	1	0.974514	AGG	nonsynonymous	AG	8	AGAGAGAG	NA
PW3322T2	chr3	135235611	PW2017tail	colon	sgMlh1	135235611	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.138	39	0	0	NA	exonic	Cenpe	nonsynonymous SNV	Cenpe:NM_173762:exon21:c.G2286T:p.E762D	3qG3	chr3-3642831-159911278	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.405882353	2	0.9427554	AGG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	33943816	PW2017tail	colon	sgMlh1	33943816	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	131	0	0	NA	exonic	Cnr1	nonsynonymous SNV	"Cnr1:NM_001355020:exon2:c.C203G:p.S68C,Cnr1:NM_001365881:exon2:c.C203G:p.S68C,Cnr1:NM_007726:exon2:c.C203G:p.S68C,Cnr1:NM_001355021:exon6:c.C203G:p.S68C"	4qA5	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.164705882	3	0.7928722	TCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	34810562	PW2017tail	colon	sgMlh1	34810562	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	164	0	0	NA	exonic	Zfp292	nonsynonymous SNV	Zfp292:NM_013889:exon8:c.T2496G:p.S832R	4qA5	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.138235294	3	0.9774142	GAC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	57225802	PW2017tail	colon	sgMlh1	57225802	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.071	73	0	0	NA	exonic	Ptpn3	nonsynonymous SNV	"Ptpn3:NM_001384115:exon15:c.A1412C:p.D471A,Ptpn3:NM_011207:exon15:c.A1412C:p.D471A"	4qB3	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.208823529	2	0.6861146	ATC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	68762405	PW2017tail	colon	sgMlh1	68762405	G	C	SNV	Mutect2;MuSe;Vardict	3	0.067	174	0	0	NA	exonic	Brinp1	synonymous SNV	Brinp1:NM_019967:exon8:c.C1887G:p.R629R	4qC1	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.197058824	2	0.7252102	TGC	synonymous	NA	NA	NA	NA
PW3322T2	chr4	74187550	PW2017tail	colon	sgMlh1	74187550	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	161	0	0	NA	exonic	Frmd3	nonsynonymous SNV	"Frmd3:NM_001163732:exon14:c.A1432G:p.T478A,Frmd3:NM_172869:exon14:c.A1432G:p.T478A"	4qC3	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.291176471	2	0.9997364	CAC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	120930449	PW2017tail	colon	sgMlh1	120930449	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	137	0	0	NA	exonic	Zfp69	synonymous SNV	"Zfp69:NM_001005788:exon6:c.C1668T:p.S556S,Zfp69:NM_001384119:exon6:c.C1665T:p.S555S"	4qD2.2	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.285294118	2	0.9986559	AGG	synonymous	NA	NA	NA	NA
PW3322T2	chr4	127195114	PW2017tail	colon	sgMlh1	127195114	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.104	50	0	0	NA	exonic	Dlgap3	nonsynonymous SNV	"Dlgap3:NM_001302081:exon3:c.C502T:p.R168C,Dlgap3:NM_198618:exon3:c.C502T:p.R168C"	4qD2.2	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.305882353	2	0.9446472	CCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	129306630	PW2017tail	colon	sgMlh1	129306630	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	172	0	0	NA	exonic	Sync	nonsynonymous SNV	Sync:NM_023485:exon4:c.C1328T:p.A443V	4qD2.2	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.185294118	3	0.5056984	GCT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	132832928	PW2017tail	colon	sgMlh1	132832928	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	175	0	0	NA	exonic	Ppp1r8	nonsynonymous SNV	"Ppp1r8:NM_001290725:exon4:c.T461C:p.L154S,Ppp1r8:NM_001355198:exon4:c.T539C:p.L180S,Ppp1r8:NM_001355199:exon4:c.T539C:p.L180S,Ppp1r8:NM_146154:exon4:c.T461C:p.L154S"	4qD2.3	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.114705882	3	0.9975574	CAA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	140575348	PW2017tail	colon	sgMlh1	140575348	G	A	SNV	Mutect2;Vardict	2	0.097	42	0	0	NA	exonic	Arhgef10l	nonsynonymous SNV	"Arhgef10l:NM_001112722:exon14:c.C1397T:p.A466V,Arhgef10l:NM_001112723:exon14:c.C1397T:p.A466V,Arhgef10l:NM_001290803:exon15:c.C1514T:p.A505V,Arhgef10l:NM_172415:exon15:c.C1514T:p.A505V"	4qD3	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.285294118	2	0.8767564	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr4	149125335	PW2017tail	colon	sgMlh1	149125335	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.222	47	0	0	NA	exonic	Cort	frameshift deletion	Cort:NM_007745:exon2:c.259delC:p.Q87Nfs*42	4qE2	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.652941176	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr4	152363378	PW2017tail	colon	sgMlh1	152363378	G	A	SNV	Mutect2;Vardict	2	0.033	197	0	0	NA	exonic	Chd5	nonsynonymous SNV	"Chd5:NM_001081376:exon11:c.G1700A:p.S567N,Chd5:NM_001369243:exon11:c.G1700A:p.S567N,Chd5:NM_029216:exon11:c.G1700A:p.S567N"	4qE2	chr4-8828216-156200568	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.097058824	3	0.9997851	AGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	25310554	PW2017tail	colon	sgMlh1	25310554	T	-	Deletion	Mutect2;Vardict	2	0.063	243	0	0	NA	exonic	Kmt2c	frameshift deletion	Kmt2c:NM_001081383:exon38:c.8290delA:p.S2764Afs*5	5qA3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.185294118	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr5	25516305	PW2017tail	colon	sgMlh1	25516305	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.177	63	0	0	NA	exonic	Cct8l1	nonsynonymous SNV	Cct8l1:NM_198621:exon1:c.C17T:p.P6L	5qB1	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.520588235	1	0.5944507	CCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	30373639	PW2017tail	colon	sgMlh1	30373639	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.131	44	0	0	NA	exonic	Otof	nonsynonymous SNV	"Otof:NM_001286421:exon41:c.T5084C:p.M1695T,Otof:NM_001313767:exon41:c.T5084C:p.M1695T,Otof:NM_031875:exon41:c.T5144C:p.M1715T,Otof:NM_001100395:exon42:c.T5129C:p.M1710T"	5qB1	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.385294118	2	0.964087	CAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	37378253	PW2017tail	colon	sgMlh1	37378253	T	-	Deletion	Mutect2;Vardict	2	0.095	88	0	0	NA	exonic	Evc2	frameshift deletion	Evc2:NM_145920:exon9:c.1271delT:p.T425Lfs*39	5qB3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3322T2	chr5	57721986	PW2017tail	colon	sgMlh1	57721986	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	128	0	0	NA	exonic	Pcdh7	nonsynonymous SNV	"Pcdh7:NM_001122758:exon1:c.G2882A:p.G961E,Pcdh7:NM_001310606:exon1:c.G2882A:p.G961E,Pcdh7:NM_001310608:exon1:c.G2882A:p.G961E,Pcdh7:NM_018764:exon1:c.G2882A:p.G961E"	5qC1	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.132352941	3	0.965156	GGA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	71623910	PW2017tail	colon	sgMlh1	71623910	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.065	131	0	0	NA	exonic	Gabra4	frameshift deletion	"Gabra4:NM_001359044:exon5:c.707delC:p.P236Qfs*8,Gabra4:NM_001359043:exon7:c.842delC:p.P281Qfs*8,Gabra4:NM_001359041:exon8:c.1157delC:p.P386Qfs*8,Gabra4:NM_001359045:exon8:c.1023delC:p.R342Efs*192,Gabra4:NM_001359046:exon8:c.945delC:p.R316Efs*192,Gabra4:NM_001359047:exon8:c.906delC:p.R303Efs*192,Gabra4:NM_010251:exon8:c.1079delC:p.P360Qfs*8"	5qC3.2	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.191176471	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr5	72734396	PW2017tail	colon	sgMlh1	72734396	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.141	42	0	0	NA	exonic	Txk	frameshift deletion	"Txk:NM_013698:exon3:c.226delC:p.L76Sfs*27,Txk:NM_001122754:exon4:c.226delC:p.L76Sfs*27,Txk:NM_001289494:exon4:c.226delC:p.L76Sfs*27,Txk:NM_001289495:exon4:c.64delC:p.L22Sfs*27"	5qC3.2	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.414705882	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr5	77294522	PW2017tail	colon	sgMlh1	77294522	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	137	0	0	NA	exonic	Noa1	synonymous SNV	Noa1:NM_019836:exon7:c.G1920A:p.T640T	5qC3.3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.147058824	3	0.929098	GCG	synonymous	NA	NA	NA	NA
PW3322T2	chr5	81646502	PW2017tail	colon	sgMlh1	81646502	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.074	71	0	0	NA	exonic	Adgrl3	nonsynonymous SNV	"Adgrl3:NM_001359829:exon8:c.G1354A:p.A452T,Adgrl3:NM_001347371:exon9:c.G1369A:p.A457T,Adgrl3:NM_001359826:exon9:c.G856A:p.A286T,Adgrl3:NM_001359833:exon9:c.G1369A:p.A457T,Adgrl3:NM_001347368:exon10:c.G1573A:p.A525T,Adgrl3:NM_001359830:exon10:c.G1573A:p.A525T,Adgrl3:NM_001359831:exon10:c.G1573A:p.A525T,Adgrl3:NM_001359832:exon10:c.G1558A:p.A520T,Adgrl3:NM_001359834:exon10:c.G1558A:p.A520T,Adgrl3:NM_001347367:exon11:c.G1573A:p.A525T,Adgrl3:NM_001347369:exon11:c.G1573A:p.A525T,Adgrl3:NM_001359828:exon11:c.G1573A:p.A525T,Adgrl3:NM_198702:exon11:c.G1573A:p.A525T"	5qD	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.217647059	2	0.7431511	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	86339518	PW2017tail	colon	sgMlh1	86339518	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	175	0	0	NA	exonic	Tmprss11d	nonsynonymous SNV	Tmprss11d:NM_145561:exon2:c.C92T:p.A31V	5qE1	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.208823529	2	0.878129	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	96712434	PW2017tail	colon	sgMlh1	96712434	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.084	76	0	0	NA	exonic	Fras1	nonsynonymous SNV	Fras1:NM_175473:exon45:c.C6338T:p.A2113V	5qE3	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.247058824	2	0.09741613	GCC	nonsynonymous	GGCC	8	GGCCGGCC	NA
PW3322T2	chr5	105083791	PW2017tail	colon	sgMlh1	105083791	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	333	0	0	NA	exonic	Gbp9	nonsynonymous SNV	Gbp9:NM_172777:exon7:c.G928A:p.D310N	5qE5	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.108823529	3	0.9999956	TCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr5	107910088	PW2017tail	colon	sgMlh1	107910088	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	152	0	0	NA	exonic	Dipk1a	synonymous SNV	Dipk1a:NM_026062:exon5:c.T603C:p.N201N	5qF	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.132352941	3	0.9807487	CAT	synonymous	NA	NA	NA	NA
PW3322T2	chr5	117285788	PW2017tail	colon	sgMlh1	117285788	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	107	0	0	NA	exonic	Pebp1	synonymous SNV	Pebp1:NM_018858:exon3:c.G279A:p.K93K	5qF	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.429411765	2	0.9763919	CCT	synonymous	NA	NA	NA	NA
PW3322T2	chr5	120483599	PW2017tail	colon	sgMlh1	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.579	21	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-5457389-150758621	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	1	1	0.991361	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr6	48473710	PW2017tail	colon	sgMlh1	48473710	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	114	0	0	NA	exonic	Sspo	nonsynonymous SNV	Sspo:NM_173428:exon51:c.G7832A:p.G2611E	6qB2.3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.35	2	0.9997776	GGG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr6	48991597	PW2017tail	colon	sgMlh1	48991598	GT	-	Deletion	Strelka2;Vardict	2	0.1143	140	0	0	NA	exonic	Svs1	frameshift deletion	Svs1:NM_172888:exon5:c.2451_2452del:p.C820Lfs*39	6qB2.3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.336176471	NA	NA	AGT	frameshift	GT	9	GTGTGTGTG	-2
PW3322T2	chr6	57159567	PW2017tail	colon	sgMlh1	57159567	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.082	474	0	0	NA	exonic	Vmn1r12	frameshift insertion	Vmn1r12:NM_001101579:exon1:c.649dupA:p.H218Afs*3	6qB3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.241176471	NA	NA	GCA	frameshift	NA	NA	NA	1
PW3322T2	chr6	73129413	PW2017tail	colon	sgMlh1	73129413	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	281	0	0	NA	exonic	Dnah6	synonymous SNV	Dnah6:NM_001164669:exon34:c.G5340A:p.P1780P	6qC1	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.138235294	3	0.9983483	CCG	synonymous	NA	NA	NA	NA
PW3322T2	chr6	77758405	PW2017tail	colon	sgMlh1	77758405	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	133	0	0	NA	exonic	Ctnna2	nonsynonymous SNV	"Ctnna2:NM_001355193:exon3:c.C289T:p.R97W,Ctnna2:NM_009819:exon3:c.C289T:p.R97W,Ctnna2:NM_001109764:exon4:c.C289T:p.R97W,Ctnna2:NM_145732:exon4:c.C289T:p.R97W"	6qC3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.114705882	3	0.9899144	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr6	107568294	PW2017tail	colon	sgMlh1	107568294	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	125	0	0	NA	exonic	Lrrn1	nonsynonymous SNV	Lrrn1:NM_008516:exon2:c.C1052T:p.A351V	6qE1	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	3	0.8980317	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr6	108489901	PW2017tail	colon	sgMlh1	108489901	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	128	0	0	NA	exonic	Itpr1	synonymous SNV	Itpr1:NM_010585:exon51:c.G6570A:p.K2190K	6qE1	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.252941176	2	0.9846872	AGC	synonymous	NA	NA	NA	NA
PW3322T2	chr6	113789865	PW2017tail	colon	sgMlh1	113789865	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.126	149	0	0	NA	exonic	Atp2b2	nonsynonymous SNV	"Atp2b2:NM_001036684:exon9:c.T1412C:p.V471A,Atp2b2:NM_009723:exon11:c.T1412C:p.V471A,Atp2b2:NM_001347365:exon13:c.T1547C:p.V516A"	6qE3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.370588235	2	0.9999281	GAC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr6	138657452	PW2017tail	colon	sgMlh1	138657452	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.139	108	0	0	NA	exonic	Igbp1b	synonymous SNV	Igbp1b:NM_015777:exon1:c.T993C:p.T331T	6qG1	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.408823529	2	0.9935702	GAG	synonymous	NA	NA	NA	NA
PW3322T2	chr6	143017970	PW2017tail	colon	sgMlh1	143017970	C	T	SNV	Mutect2;Vardict	2	0.034	129	0	0	NA	exonic	C2cd5	synonymous SNV	"C2cd5:NM_001109688:exon23:c.G2610A:p.P870P,C2cd5:NM_001286578:exon23:c.G2094A:p.P698P,C2cd5:NM_029897:exon23:c.G2637A:p.P879P,C2cd5:NM_001362118:exon24:c.G1782A:p.P594P,C2cd5:NM_029081:exon24:c.G2688A:p.P896P,C2cd5:NM_001362114:exon25:c.G2727A:p.P909P,C2cd5:NM_001362115:exon25:c.G2790A:p.P930P,C2cd5:NM_001362117:exon25:c.G2694A:p.P898P,C2cd5:NM_001362116:exon26:c.G2760A:p.P920P,C2cd5:NM_001362113:exon27:c.G2862A:p.P954P"	6qG3	chr6-4614616-147508000	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.1	3	0.9953705	GCG	synonymous	GAAA	9	GAAAGAAAG	NA
PW3322T2	chr7	6474875	PW2017tail	colon	sgMlh1	6474875	T	-	Deletion	Mutect2;Vardict	2	0.062	114	0	0	NA	exonic	Olfr1346	frameshift deletion	Olfr1346:NM_146916:exon1:c.764delT:p.Y257Tfs*40	7qA1	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.182352941	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr7	10170967	PW2017tail	colon	sgMlh1	10170967	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	206	0	0	NA	exonic	Vmn2r52	nonsynonymous SNV	Vmn2r52:NM_001105191:exon3:c.G944A:p.G315D	7qA1	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.123529412	3	0.9979404	GCC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	17048661	PW2017tail	colon	sgMlh1	17048661	C	-	Deletion	Mutect2;Vardict	2	0.076	82	0	0	NA	exonic	Hif3a	frameshift deletion	"Hif3a:NM_001162950:exon8:c.978delG:p.R327Gfs*13,Hif3a:NM_016868:exon8:c.972delG:p.R325Gfs*13"	7qA2	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.223529412	NA	NA	GCC	frameshift	GCCCC	10	GCCCCGCCCC	-1
PW3322T2	chr7	17154738	PW2017tail	colon	sgMlh1	17154738	G	A	SNV	Mutect2;Vardict	2	0.034	164	0	0	NA	exonic	Ceacam3	nonsynonymous SNV	Ceacam3:NM_054059:exon3:c.G431A:p.R144H	7qA2	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.1	3	0.9988967	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	18351063	PW2017tail	colon	sgMlh1	18351063	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.023	430	0	0	NA	exonic	Psg18	nonsynonymous SNV	"Psg18:NM_001163685:exon2:c.C107T:p.P36L,Psg18:NM_011963:exon3:c.C470T:p.P157L"	7qA3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.067647059	3	1.02E-09	CGG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	19582273	PW2017tail	colon	sgMlh1	19582273	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.069	59	0	0	NA	exonic	Clasrp	nonsynonymous SNV	Clasrp:NM_016680:exon19:c.G1898A:p.R633H	7qA3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.202941176	2	0.6106327	GCG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	41289251	PW2017tail	colon	sgMlh1	41289251	T	G	SNV	Mutect2;Vardict	2	0.021	252	0	0	NA	exonic	Gm5592	synonymous SNV	Gm5592:NM_001033782:exon3:c.T1956G:p.G652G	7qB3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.061764706	3	0.9999997	GTA	synonymous	NA	NA	NA	NA
PW3322T2	chr7	41837475	PW2017tail	colon	sgMlh1	41837475	A	G	SNV	Mutect2;Vardict	2	0.015	429	0	0	NA	exonic	Vmn2r58	synonymous SNV	Vmn2r58:NM_001105055:exon6:c.T1995C:p.T665T	7qB3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.044117647	3	1.00E-09	CAG	synonymous	NA	NA	NA	NA
PW3322T2	chr7	45678685	PW2017tail	colon	sgMlh1	45678685	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	106	0	0	NA	exonic	Sec1	nonsynonymous SNV	Sec1:NM_001271578:exon4:c.G937A:p.V313I	7qB3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.229411765	2	0.09742037	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	84361587	PW2017tail	colon	sgMlh1	84361587	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	90	0	0	NA	exonic	Arnt2	nonsynonymous SNV	Arnt2:NM_007488:exon2:c.C113A:p.A38D	7qD3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	2	0.9951964	GGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	100938543	PW2017tail	colon	sgMlh1	100938543	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.095	74	0	0	NA	exonic	P2ry6	nonsynonymous SNV	P2ry6:NM_183168:exon3:c.T608C:p.L203P	7qE2	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.279411765	2	0.9652769	CAG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr7	101177146	PW2017tail	colon	sgMlh1	101177146	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	184	0	0	NA	exonic	Fchsd2	synonymous SNV	"Fchsd2:NM_001146010:exon4:c.T168C:p.G56G,Fchsd2:NM_199012:exon4:c.T168C:p.G56G"	7qE2	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.088235294	3	0.99983	GTA	synonymous	NA	NA	NA	NA
PW3322T2	chr7	109320876	PW2017tail	colon	sgMlh1	109320876	T	-	Deletion	Mutect2;Vardict	2	0.081	167	0	0	NA	exonic	Stk33	frameshift deletion	"Stk33:NM_001355145:exon9:c.686delA:p.N229Ifs*1,Stk33:NM_054103:exon12:c.1055delA:p.N352Ifs*1"	7qE3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.238235294	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3322T2	chr7	110075704	PW2017tail	colon	sgMlh1	110075704	A	-	Deletion	Strelka2;Vardict	2	0.0842	190	0	0	NA	exonic	Zfp143	frameshift deletion	"Zfp143:NM_001374618:exon7:c.634delA:p.M214Cfs*11,Zfp143:NM_009281:exon7:c.631delA:p.M213Cfs*11"	7qE3	chr7-3683993-143497059	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.247647059	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3322T2	chr8	3483698	PW2017tail	colon	sgMlh1	3483698	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	100	0	0	NA	exonic	Tex45	frameshift deletion	Tex45:NM_029598:exon6:c.915delA:p.N306Tfs*2	8qA1.1	NA	NA	NA	NA	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	NA	NA	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW3322T2	chr8	61940291	PW2017tail	colon	sgMlh1	61940291	A	-	Deletion	Strelka2;Vardict	2	0.086	93	0	0	NA	exonic	Ddx60	frameshift deletion	Ddx60:NM_001293783:exon3:c.5delA:p.K4Nfs*5	8qB3.1	chr8-3511896-126965210	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.252941176	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3322T2	chr8	105331738	PW2017tail	colon	sgMlh1	105331738	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.201	36	0	0	NA	exonic	Fhod1	synonymous SNV	Fhod1:NM_177699:exon15:c.C2385T:p.P795P	8qD3	chr8-3511896-126965210	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.591176471	1	0.7072902	CGG	synonymous	NA	NA	NA	NA
PW3322T2	chr8	119719276	PW2017tail	colon	sgMlh1	119719276	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.105	89	0	0	NA	exonic	Atp2c2	synonymous SNV	Atp2c2:NM_026922:exon2:c.A178C:p.R60R	8qE1	chr8-3511896-126965210	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.308823529	2	0.9948983	CAG	synonymous	NA	NA	NA	NA
PW3322T2	chr9	7449786	PW2017tail	colon	sgMlh1	7449786	C	T	SNV	Mutect2;Vardict	2	0.041	100	0	0	NA	exonic	Mmp3	synonymous SNV	Mmp3:NM_010809:exon5:c.C669T:p.G223G	9qA1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.120588235	3	0.9601142	GCC	synonymous	NA	NA	NA	NA
PW3322T2	chr9	8100848	PW2017tail	colon	sgMlh1	8100848	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.064	132	0	0	NA	exonic	Cep126	nonsynonymous SNV	"Cep126:NM_001368148:exon5:c.C1102T:p.R368W,Cep126:NM_001045524:exon6:c.C1684T:p.R562W"	9qA1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.188235294	2	0.5384516	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr9	16375058	PW2017tail	colon	sgMlh1	16375058	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	273	0	0	NA	exonic	Fat3	synonymous SNV	Fat3:NM_001080814:exon2:c.C3180T:p.S1060S	9qA2	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.205882353	2	0.9388594	CGC	synonymous	NA	NA	NA	NA
PW3322T2	chr9	20301065	PW2017tail	colon	sgMlh1	20301065	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.042	152	0	0	NA	exonic	Olfr873	synonymous SNV	Olfr873:NM_146561:exon1:c.A855G:p.S285S	9qA3	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.123529412	3	0.9898604	CAC	synonymous	NA	NA	NA	NA
PW3322T2	chr9	20785437	PW2017tail	colon	sgMlh1	20785437	G	-	Deletion	Mutect2;Vardict	2	0.079	66	0	0	NA	exonic	Col5a3	frameshift deletion	"Col5a3:NM_001317388:exon39:c.2804delC:p.P935Qfs*14,Col5a3:NM_016919:exon39:c.2807delC:p.P936Qfs*14"	9qA3	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.232352941	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T2	chr9	20926510	PW2017tail	colon	sgMlh1	20926510	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.029	293	0	0	NA	exonic	Dnmt1	synonymous SNV	"Dnmt1:NM_001199431:exon16:c.C1185T:p.Y395Y,Dnmt1:NM_001199432:exon16:c.C828T:p.Y276Y,Dnmt1:NM_001199433:exon16:c.C831T:p.Y277Y,Dnmt1:NM_001314011:exon16:c.C1206T:p.Y402Y,Dnmt1:NM_010066:exon16:c.C1182T:p.Y394Y"	9qA3	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.085294118	3	0.9999993	CGT	synonymous	NA	NA	NA	NA
PW3322T2	chr9	39469817	PW2017tail	colon	sgMlh1	39469817	T	-	Deletion	Mutect2;Vardict	2	0.048	226	0	0	NA	exonic	Olfr955	frameshift deletion	Olfr955:NM_207141:exon1:c.908delA:p.K303Sfs*12	9qA5.1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.141176471	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr9	39550856	PW2017tail	colon	sgMlh1	39550856	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.083	80	0	0	NA	exonic	Olfr958	frameshift deletion	Olfr958:NM_146330:exon1:c.14delA:p.N5Tfs*4	9qA5.1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.244117647	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr9	44830428	PW2017tail	colon	sgMlh1	44830428	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.096	252	0	0	NA	exonic	Kmt2a	frameshift deletion	Kmt2a:NM_001357549:exon17:c.5253delA:p.A1752Pfs*69	9qA5.2	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.282352941	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3322T2	chr9	70722614	PW2017tail	colon	sgMlh1	70722614	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.057	232	0	0	NA	exonic	Adam10	synonymous SNV	Adam10:NM_007399:exon4:c.T327C:p.G109G	9qD	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.167647059	3	0.8798609	GTG	synonymous	NA	NA	NA	NA
PW3322T2	chr9	75006447	PW2017tail	colon	sgMlh1	75006447	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	128	0	0	NA	exonic	Fam214a	nonsynonymous SNV	"Fam214a:NM_153584:exon3:c.G382A:p.A128T,Fam214a:NM_001113283:exon4:c.G361A:p.A121T,Fam214a:NM_001359816:exon4:c.G361A:p.A121T"	9qD	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.208823529	2	0.8061529	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr9	86569272	PW2017tail	colon	sgMlh1	86569272	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.144	142	0	0	NA	exonic	Pgm3	nonsynonymous SNV	"Pgm3:NM_001163746:exon3:c.G328C:p.V110L,Pgm3:NM_028352:exon3:c.G328C:p.V110L"	9qE3.1	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.423529412	2	0.9918411	ACG	nonsynonymous	NA	NA	NA	NA
PW3322T2	chr9	123664622	PW2017tail	colon	sgMlh1	123664622	C	-	Deletion	Mutect2;Vardict	2	0.026	206	0	0	NA	exonic	Slc6a20a	frameshift deletion	Slc6a20a:NM_139142:exon2:c.193delG:p.V65Wfs*63	9qF4	chr9-3342997-124108155	2	1	1	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.076470588	NA	NA	ACG	frameshift	NA	NA	NA	-1
PW3322T2	chrX	8418098	PW2017tail	colon	sgMlh1	8418098	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	300	0	0	NA	exonic	Ssxb1	nonsynonymous SNV	Ssxb1:NM_026492:exon6:c.T331C:p.S111P	XqA1.1	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.1	NA	NA	ATC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	13486686	PW2017tail	colon	sgMlh1	13486686	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.237	32	0	0	NA	exonic	Nyx	nonsynonymous SNV	Nyx:NM_173415:exon4:c.G778A:p.A260T	XqA1.1	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.697058824	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	21486522	PW2017tail	colon	sgMlh1	21486522	-	T	Insertion	Strelka2;Vardict	2	0.0774	310	0	0	NA	exonic	Agtr2	frameshift insertion	Agtr2:NM_007429:exon3:c.395dupT:p.I135Yfs*7	XqA2	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.227647059	NA	NA	CAT	frameshift	T	8	TTTTTTTT	1
PW3322T2	chrX	48877005	PW2017tail	colon	sgMlh1	48877005	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.053	118	0	0	NA	exonic	Fsip2l	nonsynonymous SNV	Fsip2l:NM_001085499:exon2:c.A208G:p.T70A	XqA5	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.155882353	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	73899600	PW2017tail	colon	sgMlh1	73899600	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.113	151	0	0	NA	exonic	Arhgap4	frameshift deletion	"Arhgap4:NM_001162424:exon11:c.1453delC:p.H485Ifs*79,Arhgap4:NM_001162423:exon12:c.1516delC:p.H506Ifs*68,Arhgap4:NM_138630:exon12:c.1516delC:p.H506Ifs*79"	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.332352941	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3322T2	chrX	75286479	PW2017tail	colon	sgMlh1	75286479	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	171	0	0	NA	exonic	F8	synonymous SNV	"F8:NM_001161373:exon13:c.C3804T:p.T1268T,F8:NM_001161374:exon13:c.C3804T:p.T1268T,F8:NM_007977:exon14:c.C4014T:p.T1338T"	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.094117647	NA	NA	TGG	synonymous	NA	NA	NA	NA
PW3322T2	chrX	76397637	PW2017tail	colon	sgMlh1	76397637	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	124	0	0	NA	exonic	Cldn34b4	nonsynonymous SNV	"Cldn34b4:NM_001033799:exon3:c.C499T:p.P167S,Cldn34b4:NM_001356396:exon3:c.C499T:p.P167S"	XqA7.3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.15	NA	NA	ACC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	102711222	PW2017tail	colon	sgMlh1	102711222	A	-	Deletion	Mutect2;Vardict	2	0.038	206	0	0	NA	exonic	Dmrtc1b	frameshift deletion	Dmrtc1b:NM_001310614:exon1:c.46delA:p.K17Nfs*26	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.111764706	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3322T2	chrX	103356797	PW2017tail	colon	sgMlh1	103356797	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.096	33	0	0	NA	exonic	Chic1	nonsynonymous SNV	Chic1:NM_009767:exon1:c.G213T:p.E71D	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.282352941	NA	NA	AGG	nonsynonymous	GAG	61	GAGGAGGAGGAAGAAGAGGAGGATGAAGAGGAGGAGGACGAGGAAGAAGAGGAGGAGGAGG	NA
PW3322T2	chrX	106238458	PW2017tail	colon	sgMlh1	106238458	T	-	Deletion	Strelka2;Vardict	2	0.1053	190	0	0	NA	exonic	Fnd3c2	frameshift deletion	Fnd3c2:NM_001033424:exon17:c.2190delA:p.K730Nfs*10	XqD	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.309705882	NA	NA	GTT	frameshift	T	9	TTTTTTTTT	-1
PW3322T2	chrX	112243508	PW2017tail	colon	sgMlh1	112243508	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.04	215	0	0	NA	exonic	4933403O08Rik	nonsynonymous SNV	4933403O08Rik:NM_001177389:exon3:c.A970G:p.M324V	XqE1	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.117647059	NA	NA	CAT	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	133950347	PW2017tail	colon	sgMlh1	133950347	T	C	SNV	Mutect2;Vardict	2	0.038	107	0	0	NA	exonic	Sytl4	synonymous SNV	"Sytl4:NM_001290717:exon10:c.A936G:p.E312E,Sytl4:NM_001290718:exon10:c.A936G:p.E312E,Sytl4:NM_001290719:exon10:c.A936G:p.E312E,Sytl4:NM_013757:exon10:c.A936G:p.E312E"	XqE3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.111764706	NA	NA	CTT	synonymous	TCC	20	TCCTCTTCCTCCTCCTCCTC	NA
PW3322T2	chrX	134749618	PW2017tail	colon	sgMlh1	134749618	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	201	0	0	NA	exonic	Armcx6	nonsynonymous SNV	Armcx6:NM_001007578:exon4:c.A463G:p.K155E	XqE3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.152941176	NA	NA	TTA	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	143923262	PW2017tail	colon	sgMlh1	143923262	G	A	SNV	Mutect2;Vardict	2	0.047	92	0	0	NA	exonic	Dcx	nonsynonymous SNV	"Dcx:NM_001110222:exon3:c.C532T:p.R178C,Dcx:NM_001110223:exon3:c.C532T:p.R178C,Dcx:NM_001110224:exon3:c.C532T:p.R178C,Dcx:NM_010025:exon3:c.C532T:p.R178C"	XqF2	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.138235294	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3322T2	chrX	153689617	PW2017tail	colon	sgMlh1	153689617	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	144	0	0	NA	exonic	Kctd12b	synonymous SNV	Kctd12b:NM_175429:exon3:c.C75T:p.L25L	XqF3	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.305882353	NA	NA	TGA	synonymous	NA	NA	NA	NA
PW3322T2	chrX	167475092	PW2017tail	colon	sgMlh1	167475092	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	143	0	0	NA	exonic	Frmpd4	frameshift deletion	"Frmpd4:NM_001368936:exon17:c.4164delG:p.S1389Afs*21,Frmpd4:NM_001369234:exon19:c.4218delG:p.S1407Afs*21"	XqF5	chrX-7171112-169987923	2	2	0	0.68	2	NON-ABERRANT;POOR GOF (78.5%)	1	0.273529412	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr1	45334236	PW2017tail	colon	sgMlh1	45334236	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	156	0	0	NA	exonic	Col3a1	nonsynonymous SNV	Col3a1:NM_009930:exon24:c.G1682A:p.R561H	1qC1.1	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.159259259	3	0.8640579	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr1	93036926	PW2017tail	colon	sgMlh1	93036926	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	199	0	0	NA	exonic	Kif1a	synonymous SNV	"Kif1a:NM_001110315:exon36:c.T3621C:p.T1207T,Kif1a:NM_001294149:exon36:c.T3621C:p.T1207T,Kif1a:NM_001294150:exon36:c.T3648C:p.T1216T,Kif1a:NM_008440:exon36:c.T3621C:p.T1207T,Kif1a:NM_001368847:exon37:c.T3648C:p.T1216T"	1qD	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.107407407	3	0.9991816	CAG	synonymous	NA	NA	NA	NA
PW3325T1	chr1	93563344	PW2017tail	colon	sgMlh1	93563344	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	55	0	0	NA	exonic	Farp2	nonsynonymous SNV	Farp2:NM_145519:exon5:c.T367A:p.F123I	1qD	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.540740741	1	0.8358657	ATT	nonsynonymous	T	5	TTTTT	NA
PW3325T1	chr1	118838046	PW2017tail	colon	sgMlh1	118838046	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	51	0	0	NA	exonic	Gli2	nonsynonymous SNV	Gli2:NM_001081125:exon14:c.A2374G:p.S792G	1qE2.3	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.588888889	1	0.9466116	CTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr1	133658656	PW2017tail	colon	sgMlh1	133658656	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	172	0	0	NA	exonic	Zbed6	synonymous SNV	Zbed6:NM_001166552:exon1:c.G942A:p.T314T	1qE4	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.57037037	1	0.9999426	GCG	synonymous	NA	NA	NA	NA
PW3325T1	chr1	134328012	PW2017tail	colon	sgMlh1	134328012	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.093	101	0	0	NA	exonic	Ppfia4	frameshift deletion	"Ppfia4:NM_001144855:exon5:c.654delA:p.K218Nfs*24,Ppfia4:NM_001374777:exon6:c.654delA:p.K218Nfs*24"	1qE4	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.344444444	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW3325T1	chr1	134994010	PW2017tail	colon	sgMlh1	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.948	20	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	2	1	1	0.9955327	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr1	162546312	PW2017tail	colon	sgMlh1	162546312	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.054	98	0	0	NA	exonic	Eef1aknmt	synonymous SNV	Eef1aknmt:NM_144877:exon2:c.G369A:p.T123T	1qH2.1	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.2	2	9.34E-08	GCG	synonymous	NA	NA	NA	NA
PW3325T1	chr1	162808425	PW2017tail	colon	sgMlh1	162808425	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.096	77	0	0	NA	exonic	Fmo4	frameshift deletion	Fmo4:NM_144878:exon3:c.157delA:p.R53Gfs*5	1qH2.1	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.355555556	NA	NA	CTG	frameshift	NA	NA	NA	-1
PW3325T1	chr1	166099971	PW2017tail	colon	sgMlh1	166099971	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.099	105	0	0	NA	exonic	Dusp27	frameshift deletion	"Dusp27:NM_001033344:exon6:c.2071delC:p.L691Cfs*47,Dusp27:NM_001160049:exon6:c.2071delC:p.L691Cfs*47"	1qH2.3	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.366666667	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3325T1	chr1	181095049	PW2017tail	colon	sgMlh1	181095049	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.068	153	0	0	NA	exonic	Nvl	nonsynonymous SNV	Nvl:NM_026171:exon22:c.C2458A:p.L820I	1qH4	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.251851852	2	0.988718	AGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr1	190161663	PW2017tail	colon	sgMlh1	190161663	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.114	78	0	0	NA	exonic	Prox1	frameshift deletion	"Prox1:NM_001360827:exon2:c.584delC:p.P195Rfs*3,Prox1:NM_008937:exon2:c.584delC:p.P195Rfs*3"	1qH6	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.422222222	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3325T1	chr1	190161834	PW2017tail	colon	sgMlh1	190161834	G	-	Deletion	Mutect2;Vardict	2	0.065	98	0	0	NA	exonic	Prox1	frameshift deletion	"Prox1:NM_001360827:exon2:c.413delC:p.P138Qfs*11,Prox1:NM_008937:exon2:c.413delC:p.P138Qfs*11"	1qH6	chr1-6245696-191013439	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3325T1	chr10	18230497	PW2017tail	colon	sgMlh1	18230497	T	-	Deletion	Strelka2;Vardict	2	0.1104	163	0	0	NA	exonic	Ccdc28a	frameshift deletion	"Ccdc28a:NM_001346751:exon2:c.80delA:p.N27Mfs*24,Ccdc28a:NM_144820:exon2:c.80delA:p.N27Mfs*23"	10qA3	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.408888889	NA	NA	ATT	frameshift	T	8	TTTTTTTT	-1
PW3325T1	chr10	29197400	PW2017tail	colon	sgMlh1	29197400	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.098	64	0	0	NA	exonic	Soga3	nonsynonymous SNV	Soga3:NM_026138:exon6:c.C2687T:p.A896V	10qA4	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.362962963	2	0.9853704	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr10	60306124	PW2017tail	colon	sgMlh1	60306124	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.105	60	0	0	NA	exonic	Cdh23	synonymous SNV	Cdh23:NM_001252635:exon62:c.C9177T:p.D3059D	10qB4	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.388888889	2	0.9659586	TGT	synonymous	NA	NA	NA	NA
PW3325T1	chr10	61892980	PW2017tail	colon	sgMlh1	61892980	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	61	0	0	NA	exonic	Col13a1	synonymous SNV	"Col13a1:NM_001304757:exon12:c.T627C:p.G209G,Col13a1:NM_007731:exon13:c.T654C:p.G218G"	10qB4	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.274074074	2	0.940667	GAC	synonymous	NA	NA	NA	NA
PW3325T1	chr10	78000809	PW2017tail	colon	sgMlh1	78000809	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	exonic	Pfkl	nonsynonymous SNV	Pfkl:NM_008826:exon5:c.G460A:p.A154T	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	2	0.9947011	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr10	80808956	PW2017tail	colon	sgMlh1	80808956	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.121	31	0	0	NA	exonic	Jsrp1	synonymous SNV	Jsrp1:NM_028001:exon7:c.T615C:p.P205P	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.448148148	2	0.7411926	CAG	synonymous	NA	NA	NA	NA
PW3325T1	chr10	86044492	PW2017tail	colon	sgMlh1	86044492	T	-	Deletion	Mutect2;Vardict	2	0.053	158	0	0	NA	exonic	Fbxo7	frameshift deletion	"Fbxo7:NM_001310745:exon7:c.803delT:p.L269Wfs*192,Fbxo7:NM_001347151:exon7:c.797delT:p.L267Wfs*192,Fbxo7:NM_153195:exon7:c.1040delT:p.L348Wfs*192"	10qC1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3325T1	chr10	93525946	PW2017tail	colon	sgMlh1	93525946	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.208	46	0	0	NA	exonic	Amdhd1	nonsynonymous SNV	Amdhd1:NM_027908:exon8:c.G1093A:p.A365T	10qC2	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.77037037	1	0.9993626	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr10	105303602	PW2017tail	colon	sgMlh1	105303602	C	T	SNV	Mutect2;Vardict	2	0.05	84	0	0	NA	exonic	Tmtc2	nonsynonymous SNV	Tmtc2:NM_177368:exon8:c.G2062A:p.A688T	10qD1	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.185185185	2	0.5662495	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr10	115372808	PW2017tail	colon	sgMlh1	115372808	T	-	Deletion	Mutect2;Vardict	2	0.082	125	0	0	NA	exonic	Thap2	frameshift deletion	Thap2:NM_025780:exon3:c.406delA:p.R136Gfs*1	10qD2	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr10	129463176	PW2017tail	colon	sgMlh1	129463176	T	C	SNV	Mutect2;MuSe;Vardict	3	0.08	314	0	0	NA	exonic	Olfr787	nonsynonymous SNV	Olfr787:NM_001011822:exon1:c.T499C:p.C167R	10qD3	chr10-5218416-130354778	2	1	1	0.54	2	NON-ABERRANT	1	0.296296296	2	0.9999996	CTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr11	5629154	PW2017tail	colon	sgMlh1	5629154	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.11	95	0	0	NA	exonic	Ankrd36	synonymous SNV	Ankrd36:NM_023816:exon16:c.T2346C:p.G782G	11qA1	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.407407407	2	0.9810324	GTG	synonymous	NA	NA	NA	NA
PW3325T1	chr11	5989967	PW2017tail	colon	sgMlh1	5989967	G	A	SNV	Mutect2;Vardict	2	0.093	47	0	0	NA	exonic	Camk2b	synonymous SNV	Camk2b:NM_001174054:exon9:c.C603T:p.G201G	11qA1	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.344444444	2	0.9610969	GGC	synonymous	NA	NA	NA	NA
PW3325T1	chr11	30139094	PW2017tail	colon	sgMlh1	30139094	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	123	0	0	NA	exonic	Sptbn1	nonsynonymous SNV	"Sptbn1:NM_009260:exon13:c.C2128T:p.R710W,Sptbn1:NM_175836:exon13:c.C2167T:p.R723W"	11qA3.3	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.662962963	1	0.9999984	CGG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr11	80010632	PW2017tail	colon	sgMlh1	80010632	A	-	Deletion	Mutect2;Vardict	2	0.099	77	0	0	NA	exonic	Suz12	frameshift deletion	"Suz12:NM_001163018:exon5:c.517delA:p.R175Gfs*3,Suz12:NM_199196:exon6:c.586delA:p.R198Gfs*3"	11qB5	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.366666667	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr11	100421000	PW2017tail	colon	sgMlh1	100421000	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.135	89	0	0	NA	exonic	Fkbp10	frameshift deletion	"Fkbp10:NM_001163481:exon3:c.498delC:p.R168Efs*41,Fkbp10:NM_010221:exon3:c.498delC:p.R168Efs*41"	11qD	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.5	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr11	101091163	PW2017tail	colon	sgMlh1	101091163	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	126	0	0	NA	exonic	Mlx	stoploss	"Mlx:NM_001159384:exon7:c.T643C:p.X215R,Mlx:NM_001159385:exon8:c.T733C:p.X245R,Mlx:NM_011550:exon8:c.T895C:p.X299R"	11qD	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	2	0.7522538	CTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr11	101433803	PW2017tail	colon	sgMlh1	101433803	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	96	0	0	NA	exonic	Rundc1	nonsynonymous SNV	Rundc1:NM_172566:exon5:c.A1334G:p.Y445C	11qD	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.57037037	1	0.9939009	TAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr11	107983960	PW2017tail	colon	sgMlh1	107983960	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.185	55	0	0	NA	exonic	Prkca	nonsynonymous SNV	Prkca:NM_011101:exon10:c.G1155A:p.M385I	11qE1	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.685185185	1	0.9980478	CCA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr11	120287872	PW2017tail	colon	sgMlh1	120287872	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.333	14	0	0	NA	exonic	Bahcc1	nonsynonymous SNV	Bahcc1:NM_001347621:exon26:c.C7256T:p.A2419V	11qE2	chr11-3133205-120955474	2	1	1	0.54	2	NON-ABERRANT	1	0.616666667	1	0.5966251	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr12	9579567	PW2017tail	colon	sgMlh1	9579567	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.1	65	0	0	NA	exonic	Osr1	synonymous SNV	Osr1:NM_011859:exon2:c.C439T:p.L147L	12qA1.1	chr12-3236683-117875789	2	1	1	0.54	2	NON-ABERRANT	1	0.37037037	2	0.9840023	GCT	synonymous	TGGGC	10	TGGGCTGGGC	NA
PW3325T1	chr12	76315013	PW2017tail	colon	sgMlh1	76315013	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.106	134	0	0	NA	exonic	Mthfd1	frameshift deletion	Mthfd1:NM_138745:exon26:c.2630delA:p.V880Cfs*23	12qC3	chr12-3236683-117875789	2	1	1	0.54	2	NON-ABERRANT	1	0.392592593	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr12	104340760	PW2017tail	colon	sgMlh1	104340760	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	225	0	0	NA	exonic	Serpina3k	nonsynonymous SNV	Serpina3k:NM_011458:exon2:c.G250A:p.A84T	12qE	chr12-3236683-117875789	2	1	1	0.54	2	NON-ABERRANT	1	0.148148148	3	0.9830456	GGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr13	3575900	PW2017tail	colon	sgMlh1	3575900	T	-	Deletion	Mutect2;Vardict	2	0.055	135	0	0	NA	exonic	Tasor2	frameshift deletion	"Tasor2:NM_001360838:exon14:c.3719delA:p.N1240Ifs*20,Tasor2:NM_134063:exon14:c.4049delA:p.N1350Ifs*20"	13qA1	chr13-3559926-119339783	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3325T1	chr13	3644912	PW2017tail	colon	sgMlh1	3644919	CAAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.075	154	0	0	NA	exonic	Asb13	frameshift deletion	"Asb13:NM_001267724:exon2:c.44_47del:p.G15Vfs*4,Asb13:NM_178283:exon4:c.383_386del:p.G128Vfs*4"	13qA1	chr13-3559926-119339783	2	1	1	0.54	2	NON-ABERRANT	1	0.277777778	NA	NA	TCA	frameshift	T	6	TTTTTT	-8
PW3325T1	chr13	41046148	PW2017tail	colon	sgMlh1	41046148	T	-	Deletion	Mutect2;Vardict	2	0.044	159	0	0	NA	exonic	Mak	frameshift deletion	"Mak:NM_001145802:exon8:c.921delA:p.K307Nfs*16,Mak:NM_008547:exon8:c.1014delA:p.K338Nfs*16,Mak:NM_001145803:exon9:c.1014delA:p.K338Nfs*16"	13qA3.3	chr13-3559926-119339783	2	1	1	0.54	2	NON-ABERRANT	1	0.162962963	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW3325T1	chr13	63170944	PW2017tail	colon	sgMlh1	63170944	C	-	Deletion	Strelka2;Vardict	2	0.1042	48	0	0	NA	exonic	Aopep	frameshift deletion	"Aopep:NM_001289924:exon7:c.1564delC:p.H524Mfs*8,Aopep:NM_001289926:exon7:c.1564delC:p.H524Mfs*8"	13qB3	chr13-3559926-119339783	2	1	1	0.54	2	NON-ABERRANT	1	0.385925926	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr14	49960656	PW2017tail	colon	sgMlh1	49960656	T	C	SNV	Mutect2;Vardict	2	0.067	137	0	0	NA	exonic	Olfr724	nonsynonymous SNV	Olfr724:NM_146492:exon1:c.A415G:p.R139G	14qC1	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	2	0.9791261	CTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr14	50083912	PW2017tail	colon	sgMlh1	50083912	A	-	Deletion	Mutect2;Vardict	2	0.051	293	0	0	NA	exonic	Olfr726	frameshift deletion	Olfr726:NM_146316:exon1:c.768delT:p.F256Lfs*26	14qC1	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr14	52390429	PW2017tail	colon	sgMlh1	52390429	T	C	SNV	Mutect2;Vardict	2	0.032	167	0	0	NA	exonic	Olfr1511	nonsynonymous SNV	Olfr1511:NM_146271:exon1:c.A343G:p.T115A	14qC2	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.118518519	3	0.9935601	GTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr14	77111575	PW2017tail	colon	sgMlh1	77111575	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.057	102	0	0	NA	exonic	Ccdc122	nonsynonymous SNV	"Ccdc122:NM_001310649:exon4:c.C328T:p.P110S,Ccdc122:NM_175369:exon6:c.C844T:p.P282S,Ccdc122:NM_001310648:exon7:c.C616T:p.P206S"	14qD3	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.211111111	2	0.7952186	GCC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr14	103076268	PW2017tail	colon	sgMlh1	103076268	C	-	Deletion	Mutect2;Vardict	2	0.055	119	0	0	NA	exonic	Cln5	frameshift deletion	Cln5:NM_001033242:exon4:c.955delC:p.F321Lfs*3	14qE2.3	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3325T1	chr14	103177262	PW2017tail	colon	sgMlh1	103177262	A	-	Deletion	Mutect2;Vardict	2	0.065	154	0	0	NA	exonic	Mycbp2	frameshift deletion	Mycbp2:NM_207215:exon53:c.7713delT:p.Q2573Rfs*13	14qE2.3	chr14-3072210-123348696	2	1	1	0.54	2	NON-ABERRANT	1	0.240740741	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr15	76240415	PW2017tail	colon	sgMlh1	76240415	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.154	57	0	0	NA	exonic	Parp10	nonsynonymous SNV	"Parp10:NM_001163576:exon7:c.G2141A:p.R714H,Parp10:NM_001163575:exon8:c.G2141A:p.R714H"	15qD3	chr15-3327923-103525164	2	1	1	0.54	2	NON-ABERRANT	1	0.57037037	1	0.936803	ACG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr15	90952763	PW2017tail	colon	sgMlh1	90952792	TTGTTACAGGGGAAGGCTCTGGCACTTTTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.362	66	0	0	NA	exonic	Kif21a	nonframeshift deletion	"Kif21a:NM_001358050:exon27:c.3665_3694del:p.K1222_T1231del,Kif21a:NM_001109040:exon28:c.3704_3733del:p.K1235_T1244del"	15qE3	chr15-3327923-103525164	2	1	1	0.54	2	NON-ABERRANT	1	0.67037037	NA	NA	CTT	inframe	NA	NA	NA	-30
PW3325T1	chr16	48927732	PW2017tail	colon	sgMlh1	48927732	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	198	0	0	NA	exonic	Dzip3	nonsynonymous SNV	"Dzip3:NM_027341:exon29:c.A2782G:p.M928V,Dzip3:NM_001110017:exon30:c.A3400G:p.M1134V,Dzip3:NM_001356425:exon30:c.A3400G:p.M1134V"	16qB5	chr16-7292307-95410918	2	2	0	0.54	2	NON-ABERRANT	1	0.696296296	1	1.01E-09	ATG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr16	58473677	PW2017tail	colon	sgMlh1	58473679	CCA	-	Deletion	Mutect2;Strelka2;Vardict	3	0.109	77	0	0	NA	exonic	St3gal6	nonframeshift deletion	"St3gal6:NM_001357433:exon8:c.593_595del:p.V198del,St3gal6:NM_018784:exon8:c.593_595del:p.V198del,St3gal6:NM_001357434:exon9:c.563_565del:p.V188del,St3gal6:NM_001357435:exon9:c.593_595del:p.V198del"	16qC1.2	chr16-7292307-95410918	2	2	0	0.54	2	NON-ABERRANT	1	0.403703704	NA	NA	TCC	inframe	NA	NA	NA	-3
PW3325T1	chr16	74352832	PW2017tail	colon	sgMlh1	74352832	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.087	89	0	0	NA	exonic	Robo2	nonsynonymous SNV	"Robo2:NM_001358491:exon2:c.A176C:p.H59P,Robo2:NM_001358492:exon2:c.A176C:p.H59P,Robo2:NM_001358493:exon2:c.A176C:p.H59P,Robo2:NM_001358494:exon2:c.A107C:p.H36P,Robo2:NM_175549:exon2:c.A107C:p.H36P"	16qC3.1	chr16-7292307-95410918	2	2	0	0.54	2	NON-ABERRANT	1	0.322222222	2	0.9961939	GTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr17	8182310	PW2017tail	colon	sgMlh1	8182310	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	84	0	0	NA	exonic	Cep43	nonsynonymous SNV	"Cep43:NM_201230:exon7:c.C602T:p.A201V,Cep43:NM_001197046:exon8:c.C662T:p.A221V"	17qA1	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.348148148	2	0.9966845	GCC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr17	12702265	PW2017tail	colon	sgMlh1	12702265	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	112	0	0	NA	exonic	Igf2r	frameshift deletion	Igf2r:NM_010515:exon28:c.3928delG:p.D1310Ifs*26	17qA1	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.348148148	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr17	13226875	PW2017tail	colon	sgMlh1	13226875	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.02	843	0	0	NA	exonic	Smok2a	synonymous SNV	Smok2a:NM_013741:exon2:c.T1338C:p.S446S	17qA1	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.074074074	3	1	GTA	synonymous	NA	NA	NA	NA
PW3325T1	chr17	18185101	PW2017tail	colon	sgMlh1	18185101	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	137	0	0	NA	exonic	Vmn2r92	nonsynonymous SNV	"Vmn2r92:NM_001104541:exon6:c.A2506G:p.R836G,Vmn2r92:NM_001385105:exon6:c.A2503G:p.R835G"	17qA3.2	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.496296296	1	0.8489317	GAG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr17	31681028	PW2017tail	colon	sgMlh1	31681028	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.066	84	0	0	NA	exonic	Cryaa	nonsynonymous SNV	"Cryaa:NM_001278570:exon3:c.C355T:p.R119C,Cryaa:NM_001278569:exon4:c.C442T:p.R148C,Cryaa:NM_013501:exon4:c.C424T:p.R142C"	17qB1	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.244444444	2	0.9220969	CCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr17	35161824	PW2017tail	colon	sgMlh1	35161824	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.2	58	0	0	NA	exonic	Prrc2a	nonsynonymous SNV	"Prrc2a:NM_001199044:exon4:c.C376T:p.P126S,Prrc2a:NM_020027:exon4:c.C376T:p.P126S"	17qB1	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.740740741	1	0.9997946	GGG	nonsynonymous	G	5	GGGGG	NA
PW3325T1	chr17	74691079	PW2017tail	colon	sgMlh1	74691079	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.088	99	0	0	NA	exonic	Birc6	frameshift deletion	Birc6:NM_007566:exon68:c.13738delA:p.N4581Mfs*18	17qE2	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.325925926	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr17	78855244	PW2017tail	colon	sgMlh1	78855244	T	-	Deletion	Mutect2;Vardict	2	0.07	88	0	0	NA	exonic	Eif2ak2	frameshift deletion	Eif2ak2:NM_011163:exon16:c.1443delA:p.K481Nfs*16	17qE3	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.259259259	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr17	83428234	PW2017tail	colon	sgMlh1	83428234	A	-	Deletion	Mutect2;Vardict	2	0.057	137	0	0	NA	exonic	Eml4	frameshift deletion	"Eml4:NM_001357886:exon5:c.383delA:p.N130Tfs*64,Eml4:NM_001379374:exon6:c.512delA:p.N173Tfs*64,Eml4:NM_001114361:exon7:c.686delA:p.N231Tfs*64,Eml4:NM_001286567:exon7:c.545delA:p.N184Tfs*64"	17qE4	chr17-3545491-89046578	2	1	1	0.54	2	NON-ABERRANT	1	0.211111111	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr18	34312304	PW2017tail	colon	sgMlh1	34312304	-	C	Insertion	Strelka2;Vardict	2	0.3788	132	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-3281580-80194980	2	1	1	0.54	2	NON-ABERRANT	1	0.701481481	NA	NA	CAC	frameshift	NA	NA	NA	1
PW3325T1	chr18	34312306	PW2017tail	colon	sgMlh1	34312307	GT	-	Deletion	Strelka2;Vardict	2	0.2248	129	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2077_2078del:p.V693fs*0,Apc:NM_007462:exon16:c.2254_2255del:p.V752fs*0,Apc:NM_001360980:exon17:c.2308_2309del:p.V770fs*0"	18qB1	chr18-3281580-80194980	2	1	1	0.54	2	NON-ABERRANT	1	0.832592593	NA	NA	CGT	frameshift	NA	NA	NA	-2
PW3325T1	chr18	37308607	PW2017tail	colon	sgMlh1	37308607	-	G	Insertion	Mutect2;Vardict	2	0.058	249	0	0	NA	exonic	Pcdhb4	frameshift insertion	Pcdhb4:NM_053129:exon1:c.970dupG:p.L326Tfs*15	18qB3	chr18-3281580-80194980	2	1	1	0.54	2	NON-ABERRANT	1	0.214814815	NA	NA	GAG	frameshift	G	5	GGGGG	1
PW3325T1	chr18	56783114	PW2017tail	colon	sgMlh1	56783114	C	-	Deletion	Mutect2;Vardict	2	0.097	50	0	0	NA	exonic	Marchf3	frameshift deletion	"Marchf3:NM_001374227:exon4:c.508delG:p.A170Pfs*31,Marchf3:NM_177115:exon4:c.508delG:p.A170Pfs*31"	18qD3	chr18-3281580-80194980	2	1	1	0.54	2	NON-ABERRANT	1	0.359259259	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr19	17329306	PW2017tail	colon	sgMlh1	17329306	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.182	128	0	0	NA	exonic	Gcnt1	nonsynonymous SNV	"Gcnt1:NM_001136484:exon3:c.A1054G:p.R352G,Gcnt1:NM_010265:exon3:c.A1054G:p.R352G,Gcnt1:NM_173442:exon3:c.A1054G:p.R352G"	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.674074074	1	0.9999996	CTA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr19	18690332	PW2017tail	colon	sgMlh1	18690332	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.116	53	0	0	NA	exonic	Carnmt1	frameshift deletion	"Carnmt1:NM_001377051:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377052:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_001377053:exon4:c.666delT:p.F224Lfs*58,Carnmt1:NM_001377054:exon4:c.531delT:p.F179Lfs*58,Carnmt1:NM_001377055:exon4:c.510delT:p.F172Lfs*58,Carnmt1:NM_026120:exon4:c.666delT:p.F224Lfs*58"	19qB	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.42962963	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr19	29325086	PW2017tail	colon	sgMlh1	29325086	G	T	SNV	Mutect2;Vardict	2	0.053	103	0	0	NA	exonic	Insl6	nonsynonymous SNV	Insl6:NM_013754:exon1:c.C230A:p.P77H	19qC1	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	2	0.6654756	AGG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr19	38525185	PW2017tail	colon	sgMlh1	38525185	T	-	Deletion	Mutect2;Vardict	2	0.069	153	0	0	NA	exonic	Plce1	frameshift deletion	Plce1:NM_019588:exon1:c.927delT:p.F311Lfs*10	19qC3	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3325T1	chr19	38943837	PW2017tail	colon	sgMlh1	38943837	C	T	SNV	Mutect2;Strelka2	2	0.058	200	0	0	NA	exonic	Hells	nonsynonymous SNV	Hells:NM_008234:exon8:c.C550T:p.P184S	19qC3	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.214814815	2	0.914373	CCC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr19	47670961	PW2017tail	colon	sgMlh1	47670961	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.094	84	0	0	NA	exonic	Col17a1	nonsynonymous SNV	"Col17a1:NM_001290825:exon15:c.A1178C:p.K393T,Col17a1:NM_007732:exon15:c.A1178C:p.K393T"	19qD1	chr19-3279476-59060521	2	1	1	0.54	2	NON-ABERRANT	1	0.348148148	2	0.9966845	CTT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	6034190	PW2017tail	colon	sgMlh1	6034190	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	93	0	0	NA	exonic	Upf2	nonsynonymous SNV	Upf2:NM_001081132:exon16:c.G3107A:p.G1036E	2qA1	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.459259259	2	0.7475762	GGA	nonsynonymous	GAA	16	GAAGAAGAAGAAGAAG	NA
PW3325T1	chr2	25194790	PW2017tail	colon	sgMlh1	25194790	T	A	SNV	Mutect2;Vardict	2	0.049	86	0	0	NA	exonic	Tor4a	nonsynonymous SNV	Tor4a:NM_146115:exon2:c.A1100T:p.N367I	2qA3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.181481481	2	0.5290849	GTT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	25243987	PW2017tail	colon	sgMlh1	25243987	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.114	64	0	0	NA	exonic	Rnf208	frameshift deletion	Rnf208:NM_176834:exon1:c.692delG:p.G233Vfs*59	2qA3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.422222222	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3325T1	chr2	37801097	PW2017tail	colon	sgMlh1	37801097	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.104	49	0	0	NA	exonic	Dennd1a	nonsynonymous SNV	"Dennd1a:NM_001362978:exon20:c.C1774T:p.L592F,Dennd1a:NM_001362977:exon21:c.C1894T:p.L632F,Dennd1a:NM_146122:exon22:c.C1990T:p.L664F,Dennd1a:NM_001362973:exon23:c.C2119T:p.L707F"	2qB	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.385185185	2	0.9474885	AGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	52273888	PW2017tail	colon	sgMlh1	52273888	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	332	0	0	NA	exonic	Neb	synonymous SNV	Neb:NM_010889:exon47:c.C6057T:p.S2019S	2qC1.1	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.277777778	2	0.9999971	CGC	synonymous	NA	NA	NA	NA
PW3325T1	chr2	66280724	PW2017tail	colon	sgMlh1	66280724	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.073	130	0	0	NA	exonic	Scn1a	frameshift deletion	"Scn1a:NM_001313997:exon25:c.4553delA:p.K1518Sfs*20,Scn1a:NM_018733:exon25:c.4520delA:p.K1507Sfs*20"	2qC1.3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.27037037	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr2	66484298	PW2017tail	colon	sgMlh1	66484298	A	T	SNV	Mutect2;Vardict	2	0.034	252	0	0	NA	exonic	Scn9a	nonsynonymous SNV	"Scn9a:NM_001290674:exon27:c.T5075A:p.I1692N,Scn9a:NM_001290675:exon27:c.T5042A:p.I1681N"	2qC1.3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.125925926	3	0.9991798	GAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	86314946	PW2017tail	colon	sgMlh1	86314946	A	-	Deletion	Mutect2;Vardict	2	0.059	192	0	0	NA	exonic	Olfr1053	frameshift deletion	Olfr1053:NM_001177857:exon1:c.339delT:p.F113Lfs*21	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr2	87002491	PW2017tail	colon	sgMlh1	87002491	C	T	SNV	Mutect2;Vardict	2	0.024	270	0	0	NA	exonic	Olfr1102	nonsynonymous SNV	Olfr1102:NM_207154:exon1:c.C521T:p.A174V	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.088888889	3	0.9999944	GCT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	87672058	PW2017tail	colon	sgMlh1	87672058	A	-	Deletion	Strelka2;Vardict	2	0.0927	151	0	0	NA	exonic	Olfr1135	frameshift deletion	Olfr1135:NM_146660:exon1:c.308delT:p.F103Sfs*5	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.343333333	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3325T1	chr2	88034225	PW2017tail	colon	sgMlh1	88034225	T	-	Deletion	Strelka2;Vardict	2	0.0707	99	0	0	NA	exonic	Olfr73	stopgain	Olfr73:NM_054090:exon1:c.913delA:p.I305fs*0	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.261851852	NA	NA	ATT	nonsynonymous	T	8	TTTTTTTT	-1
PW3325T1	chr2	88560233	PW2017tail	colon	sgMlh1	88560233	T	-	Deletion	Mutect2;Vardict	2	0.069	131	0	0	NA	exonic	Olfr1188	frameshift deletion	Olfr1188:NM_146919:exon1:c.763delT:p.F256Lfs*20	2qD	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr2	89054539	PW2017tail	colon	sgMlh1	89054539	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.093	145	0	0	NA	exonic	Olfr1218	nonsynonymous SNV	Olfr1218:NM_146818:exon1:c.G886A:p.A296T	2qE1	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.344444444	2	0.9999451	GCA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	101770936	PW2017tail	colon	sgMlh1	101770936	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	102	0	0	NA	exonic	Prr5l	nonsynonymous SNV	"Prr5l:NM_001083810:exon3:c.A244G:p.R82G,Prr5l:NM_001355625:exon3:c.A244G:p.R82G,Prr5l:NM_175181:exon3:c.A244G:p.R82G,Prr5l:NM_001110849:exon4:c.A244G:p.R82G"	2qE2	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.2	2	0.7015528	CTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	104471431	PW2017tail	colon	sgMlh1	104471431	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.484	105	0	0	NA	exonic	Hipk3	nonsynonymous SNV	"Hipk3:NM_001145824:exon2:c.G415A:p.G139S,Hipk3:NM_010434:exon2:c.G415A:p.G139S"	2qE2	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.896296296	1	1.01E-09	CCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	109093084	PW2017tail	colon	sgMlh1	109093084	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	124	0	0	NA	exonic	Mettl15	nonsynonymous SNV	Mettl15:NM_029790:exon6:c.G992A:p.R331H	2qE3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.296296296	2	0.997949	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	111270094	PW2017tail	colon	sgMlh1	111270094	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	158	0	0	NA	exonic	Olfr1277	nonsynonymous SNV	Olfr1277:NM_146396:exon1:c.C272T:p.T91M	2qE3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.3	2	0.9996535	CGT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	111538124	PW2017tail	colon	sgMlh1	111538124	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.033	232	0	0	NA	exonic	Olfr1294	nonsynonymous SNV	Olfr1294:NM_146885:exon1:c.T164C:p.L55P	2qE3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.122222222	3	0.9989632	CAG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	120411513	PW2017tail	colon	sgMlh1	120411513	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	210	0	0	NA	exonic	Ganc	synonymous SNV	Ganc:NM_172672:exon3:c.C171T:p.T57T	2qE5	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.185185185	3	0.5748176	CCA	synonymous	NA	NA	NA	NA
PW3325T1	chr2	155829270	PW2017tail	colon	sgMlh1	155829270	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.386	94	0	0	NA	exonic	Fam83c	synonymous SNV	Fam83c:NM_027788:exon4:c.G2106C:p.R702R	2qH1	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.714814815	1	0.9999974	GCC	synonymous	NA	NA	NA	NA
PW3325T1	chr2	155829511	PW2017tail	colon	sgMlh1	155829511	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.098	111	0	0	NA	exonic	Fam83c	nonsynonymous SNV	Fam83c:NM_027788:exon4:c.G1865A:p.G622D	2qH1	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.362962963	2	0.9992136	GCC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr2	165352440	PW2017tail	colon	sgMlh1	165352440	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.103	103	0	0	NA	exonic	Zfp663	frameshift deletion	"Zfp663:NM_001379475:exon5:c.1858delA:p.S620Vfs*38,Zfp663:NM_001379476:exon5:c.1750delA:p.S584Vfs*38,Zfp663:NM_001005425:exon6:c.1858delA:p.S620Vfs*38,Zfp663:NM_001379474:exon6:c.1858delA:p.S620Vfs*38"	2qH3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr2	172992139	PW2017tail	colon	sgMlh1	172992148	GCCCCTCTGG	-	Deletion	Mutect2;Strelka2	2	0.089	154	0	0	NA	exonic	Spo11	frameshift deletion	"Spo11:NM_001083959:exon11:c.978_987del:p.P327Kfs*5,Spo11:NM_001083960:exon11:c.939_948del:p.P314Kfs*5,Spo11:NM_001305434:exon11:c.927_936del:p.P310Kfs*5,Spo11:NM_012046:exon12:c.1053_1062del:p.P352Kfs*5"	2qH3	chr2-4992200-181815659	2	1	1	0.54	2	NON-ABERRANT	1	0.32962963	NA	NA	AGC	frameshift	NA	NA	NA	-10
PW3325T1	chr3	53537361	PW2017tail	colon	sgMlh1	53537361	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	142	0	0	NA	exonic	Frem2	nonsynonymous SNV	Frem2:NM_172862:exon14:c.T7348C:p.S2450P	3qC	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.162962963	3	0.8010047	GAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr3	58624376	PW2017tail	colon	sgMlh1	58624376	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	170	0	0	NA	exonic	Erich6	nonsynonymous SNV	Erich6:NM_001081262:exon9:c.C1198T:p.R400C	3qD	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.144444444	3	0.9604101	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr3	86417964	PW2017tail	colon	sgMlh1	86417964	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	158	0	0	NA	exonic	Lrba	nonsynonymous SNV	"Lrba:NM_001077687:exon36:c.G5728T:p.A1910S,Lrba:NM_001077688:exon36:c.G5728T:p.A1910S,Lrba:NM_030695:exon36:c.G5728T:p.A1910S"	3qF1	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.155555556	3	0.8947854	AGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr3	87932179	PW2017tail	colon	sgMlh1	87932179	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.067	123	0	0	NA	exonic	Isg20l2	frameshift deletion	Isg20l2:NM_177663:exon2:c.696delC:p.C235Afs*31	3qF1	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr3	95832599	PW2017tail	colon	sgMlh1	95832601	CTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.06	148	0	0	NA	exonic	Prpf3	nonframeshift deletion	"Prpf3:NM_001316751:exon15:c.1865_1867del:p.E622del,Prpf3:NM_027541:exon15:c.1865_1867del:p.E622del"	3qF2.1	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.222222222	NA	NA	GCT	inframe	NA	NA	NA	-3
PW3325T1	chr3	106734629	PW2017tail	colon	sgMlh1	106734629	A	-	Deletion	Strelka2;Vardict	2	0.1	80	0	0	NA	exonic	Lrif1	frameshift deletion	"Lrif1:NM_001039478:exon2:c.320delA:p.K109Nfs*12,Lrif1:NM_028081:exon2:c.260delA:p.K89Nfs*12,Lrif1:NM_001039488:exon3:c.1814delA:p.K607Nfs*12,Lrif1:NM_001286685:exon4:c.260delA:p.K89Nfs*12"	3qF2.3	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.37037037	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3325T1	chr3	113561873	PW2017tail	colon	sgMlh1	113561873	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.065	101	0	0	NA	exonic	Amy1	stopgain	"Amy1:NM_001110505:exon7:c.C952T:p.R318X,Amy1:NM_007446:exon7:c.C952T:p.R318X"	3qF3	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.240740741	2	0.9355445	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr3	127544208	PW2017tail	colon	sgMlh1	127544208	T	-	Deletion	Strelka2;Vardict	2	0.1068	103	0	0	NA	exonic	Larp7	frameshift deletion	Larp7:NM_138593:exon9:c.1201delA:p.T401Qfs*39	3qG2	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.395555556	NA	NA	GTT	frameshift	T	8	TTTTTTTT	-1
PW3325T1	chr3	132732178	PW2017tail	colon	sgMlh1	132732178	A	-	Deletion	Strelka2;Vardict	2	0.0928	97	0	0	NA	exonic	Tbck	frameshift deletion	Tbck:NM_001163455:exon15:c.1363delA:p.N457Ifs*14	3qG3	chr3-8666483-157994825	2	1	1	0.54	2	NON-ABERRANT	1	0.343703704	NA	NA	CAA	frameshift	A	8	AAAAAAAA	-1
PW3325T1	chr4	15998047	PW2017tail	colon	sgMlh1	15998047	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.038	147	0	0	NA	exonic	Osgin2	nonsynonymous SNV	"Osgin2:NM_001355615:exon6:c.T1442C:p.V481A,Osgin2:NM_001355616:exon6:c.T1043C:p.V348A,Osgin2:NM_145950:exon6:c.T1574C:p.V525A"	4qA2	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.140740741	3	0.9483973	AAC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr4	60741214	PW2017tail	colon	sgMlh1	60741214	A	G	SNV	Mutect2;Vardict	2	0.038	212	0	0	NA	exonic	Mup12	nonsynonymous SNV	Mup12:NM_001199995:exon1:c.T2C:p.M1T	4qB3	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.140740741	3	0.9888356	CAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr4	63225285	PW2017tail	colon	sgMlh1	63225285	G	A	SNV	Mutect2;Vardict	2	0.054	80	0	0	NA	exonic	Col27a1	synonymous SNV	Col27a1:NM_025685:exon3:c.G1209A:p.A403A	4qB3	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.2	2	0.69201	CGC	synonymous	NA	NA	NA	NA
PW3325T1	chr4	108595497	PW2017tail	colon	sgMlh1	108595497	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	93	0	0	NA	exonic	Orc1	nonsynonymous SNV	Orc1:NM_011015:exon5:c.G568A:p.A190T	4qC7	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.381481481	2	0.9947011	AGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr4	112255693	PW2017tail	colon	sgMlh1	112255693	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	176	0	0	NA	exonic	Skint3	nonsynonymous SNV	"Skint3:NM_001348354:exon3:c.G151T:p.G51C,Skint3:NM_001102474:exon4:c.G499T:p.G167C,Skint3:NM_177578:exon4:c.G499T:p.G167C"	4qD1	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.248148148	2	0.9915065	AGG	nonsynonymous	GGTT	8	GGTTGGTT	NA
PW3325T1	chr4	116095813	PW2017tail	colon	sgMlh1	116095813	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.407	99	0	0	NA	exonic	Lrrc41	nonsynonymous SNV	Lrrc41:NM_153521:exon8:c.G2027A:p.R676H	4qD1	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.753703704	1	0.9999999	CGT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr4	145622335	PW2017tail	colon	sgMlh1	145622335	A	-	Deletion	Mutect2;Vardict	2	0.034	217	0	0	NA	exonic	Gm13212	frameshift deletion	Gm13212:NM_001324416:exon4:c.341delA:p.R116Dfs*16	4qE1	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.125925926	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr4	155585414	PW2017tail	colon	sgMlh1	155585414	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	331	0	0	NA	exonic	Nadk	nonsynonymous SNV	"Nadk:NM_001355599:exon5:c.G292A:p.D98N,Nadk:NM_001159637:exon6:c.G553A:p.D185N,Nadk:NM_138671:exon6:c.G553A:p.D185N"	4qE2	chr4-6204537-155750465	2	1	1	0.54	2	NON-ABERRANT	1	0.27037037	2	0.9999912	AGA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	34163608	PW2017tail	colon	sgMlh1	34163608	A	-	Deletion	Mutect2;Vardict	2	0.057	117	0	0	NA	exonic	Haus3	frameshift deletion	Haus3:NM_146159:exon4:c.1493delT:p.F498Sfs*5	5qB2	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.211111111	NA	NA	GAA	frameshift	A	6	AAAAAA	-1
PW3325T1	chr5	76858245	PW2017tail	colon	sgMlh1	76858245	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.131	54	0	0	NA	exonic	Cracd	frameshift deletion	Cracd:NM_001163793:exon6:c.2452delA:p.K819Sfs*3	5qC3.3	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.485185185	NA	NA	GAA	frameshift	GGAA	8	GGAAGGAA	-1
PW3325T1	chr5	86126471	PW2017tail	colon	sgMlh1	86126471	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.094	131	0	0	NA	exonic	Uba6	nonsynonymous SNV	Uba6:NM_172712:exon27:c.A2398G:p.K800E	5qE1	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.348148148	2	0.9998611	TTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	108314078	PW2017tail	colon	sgMlh1	108314078	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	105	0	0	NA	exonic	Pigg	nonsynonymous SNV	"Pigg:NM_001081234:exon2:c.T274C:p.Y92H,Pigg:NM_001310689:exon2:c.T274C:p.Y92H,Pigg:NM_001370998:exon2:c.T274C:p.Y92H"	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.437037037	2	0.9223897	CTA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	109292753	PW2017tail	colon	sgMlh1	109292753	T	C	SNV	Mutect2;Vardict	2	0.032	318	0	0	NA	exonic	Vmn2r15	nonsynonymous SNV	Vmn2r15:NM_001104626:exon3:c.A1238G:p.H413R	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.118518519	3	0.999962	ATG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	109420103	PW2017tail	colon	sgMlh1	109420103	C	T	SNV	Mutect2;Vardict	2	0.048	94	0	0	NA	exonic	Vmn2r17	nonsynonymous SNV	"Vmn2r17:NM_001104628:exon1:c.C91T:p.R31C,Vmn2r17:NM_001385190:exon1:c.C91T:p.R31C"	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.177777778	3	0.5217168	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	117671454	PW2017tail	colon	sgMlh1	117671454	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	174	0	0	NA	exonic	Ksr2	synonymous SNV	Ksr2:NM_001312914:exon7:c.G1281A:p.T427T	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.311111111	2	0.9999298	CGG	synonymous	NA	NA	NA	NA
PW3325T1	chr5	120483599	PW2017tail	colon	sgMlh1	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.429	17	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	2	0.794444444	1	0.9199552	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr5	147503173	PW2017tail	colon	sgMlh1	147503173	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	217	0	0	NA	exonic	Pan3	frameshift deletion	Pan3:NM_001359433:exon6:c.35delT:p.W13Gfs*7	5qG3	chr5-8064510-150513023	2	2	0	0.54	2	NON-ABERRANT	1	0.322222222	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW3325T1	chr6	71235346	PW2017tail	colon	sgMlh1	71235346	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.089	86	0	0	NA	exonic	Smyd1	nonsynonymous SNV	Smyd1:NM_001160127:exon5:c.T695C:p.M232T	6qC1	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.32962963	2	0.9963255	CAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr6	82735334	PW2017tail	colon	sgMlh1	82735334	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.089	72	0	0	NA	exonic	Hk2	synonymous SNV	Hk2:NM_013820:exon11:c.C1632A:p.R544R	6qC3	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.32962963	2	0.9912291	CGC	synonymous	ACGC	8	ACGCACGC	NA
PW3325T1	chr6	126866363	PW2017tail	colon	sgMlh1	126866363	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.175	81	0	0	NA	exonic	Akap3	synonymous SNV	Akap3:NM_009650:exon5:c.G1944A:p.P648P	6qF3	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.648148148	1	0.9996011	CGA	synonymous	NA	NA	NA	NA
PW3325T1	chr6	128372920	PW2017tail	colon	sgMlh1	128372920	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.094	56	0	0	NA	exonic	Foxm1	nonsynonymous SNV	Foxm1:NM_008021:exon8:c.C1228T:p.R410C	6qF3	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.348148148	2	0.009985429	CCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr6	128490076	PW2017tail	colon	sgMlh1	128490076	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	130	0	0	NA	exonic	Pzp	nonsynonymous SNV	Pzp:NM_007376:exon27:c.A3333C:p.E1111D	6qF3	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	2	0.5676869	CTT	nonsynonymous	TCA	8	TCATCATC	NA
PW3325T1	chr6	136606812	PW2017tail	colon	sgMlh1	136606812	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.085	71	0	0	NA	exonic	Atf7ip	synonymous SNV	Atf7ip:NM_019426:exon15:c.C3840T:p.R1280R	6qG1	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.314814815	2	0.9869747	GCG	synonymous	NA	NA	NA	NA
PW3325T1	chr6	142566031	PW2017tail	colon	sgMlh1	142566031	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	100	0	0	NA	exonic	Kcnj8	synonymous SNV	"Kcnj8:NM_001330363:exon3:c.T849C:p.T283T,Kcnj8:NM_008428:exon3:c.T849C:p.T283T"	6qG2	chr6-5272904-149014300	2	1	1	0.54	2	NON-ABERRANT	1	0.159259259	3	0.7218936	CAG	synonymous	NA	NA	NA	NA
PW3325T1	chr7	12600850	PW2017tail	colon	sgMlh1	12600850	T	C	SNV	Mutect2;Vardict	2	0.012	433	0	0	NA	exonic	Vmn2r53	synonymous SNV	Vmn2r53:NM_001104644:exon3:c.A1098G:p.Q366Q	7qA1	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.044444444	3	1.00E-09	TTT	synonymous	NA	NA	NA	NA
PW3325T1	chr7	34202537	PW2017tail	colon	sgMlh1	34202537	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.118	110	0	0	NA	exonic	Gpi1	frameshift deletion	Gpi1:NM_008155:exon18:c.1554delG:p.K519Sfs*16	7qB1	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.437037037	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW3325T1	chr7	41427665	PW2017tail	colon	sgMlh1	41427665	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.126	273	0	0	NA	exonic	Vmn2r57	frameshift deletion	Vmn2r57:NM_177764:exon3:c.1076delT:p.F359Sfs*13	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.466666667	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr7	42012528	PW2017tail	colon	sgMlh1	42012528	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	258	0	0	NA	exonic	Vmn2r59	nonsynonymous SNV	Vmn2r59:NM_001105056:exon6:c.C1862T:p.A621V	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.17037037	3	0.09877809	GGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	42045835	PW2017tail	colon	sgMlh1	42045835	A	G	SNV	Mutect2;Vardict	2	0.035	255	0	0	NA	exonic	Vmn2r59	synonymous SNV	Vmn2r59:NM_001105056:exon3:c.T1152C:p.L384L	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.12962963	3	0.998864	GAA	synonymous	NA	NA	NA	NA
PW3325T1	chr7	43657600	PW2017tail	colon	sgMlh1	43657600	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.113	44	0	0	NA	exonic	Siglece	nonsynonymous SNV	Siglece:NM_031181:exon4:c.A962G:p.Y321C	7qB3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.418518519	2	0.8733799	ATA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	48447823	PW2017tail	colon	sgMlh1	48447823	A	-	Deletion	Strelka2;Vardict	2	0.0872	149	0	0	NA	exonic	Mrgprb1	frameshift deletion	Mrgprb1:NM_205810:exon2:c.340delT:p.S114Hfs*6	7qB4	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.322962963	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3325T1	chr7	86306282	PW2017tail	colon	sgMlh1	86306282	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	162	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.C830A:p.T277N	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.355555556	2	0.9999786	AGT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	86306546	PW2017tail	colon	sgMlh1	86306546	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.072	168	0	0	NA	exonic	Olfr309	nonsynonymous SNV	Olfr309:NM_001011866:exon1:c.C566A:p.P189H	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.266666667	2	0.9974031	AGG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	86363805	PW2017tail	colon	sgMlh1	86363805	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.059	193	0	0	NA	exonic	Olfr305	synonymous SNV	Olfr305:NM_146616:exon1:c.T531C:p.C177C	7qD3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	2	0.9324242	CAC	synonymous	NA	NA	NA	NA
PW3325T1	chr7	103584092	PW2017tail	colon	sgMlh1	103584092	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	282	0	0	NA	exonic	Olfr617	synonymous SNV	Olfr617:NM_146841:exon1:c.C69A:p.I23I	7qE3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.151851852	3	0.9917526	TCC	synonymous	NA	NA	NA	NA
PW3325T1	chr7	103787816	PW2017tail	colon	sgMlh1	103787816	C	T	SNV	Mutect2;Vardict	2	0.029	181	0	0	NA	exonic	Olfr67	nonsynonymous SNV	Olfr67:NM_013619:exon2:c.G460A:p.A154T	7qE3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.107407407	3	0.9983512	GCT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	104860711	PW2017tail	colon	sgMlh1	104860711	G	A	SNV	Mutect2;Vardict	2	0.019	381	0	0	NA	exonic	Usp17la	stopgain	Usp17la:NM_007887:exon3:c.G522A:p.W174X	7qE3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.07037037	3	2.32E-09	GGA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	105740293	PW2017tail	colon	sgMlh1	105740293	C	-	Deletion	Mutect2;Vardict	2	0.043	145	0	0	NA	exonic	Ilk	frameshift deletion	"Ilk:NM_001161724:exon3:c.206delC:p.L71Cfs*25,Ilk:NM_010562:exon3:c.206delC:p.L71Cfs*25"	7qE3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.159259259	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3325T1	chr7	108622747	PW2017tail	colon	sgMlh1	108622747	A	-	Deletion	Mutect2;Vardict	2	0.093	138	0	0	NA	exonic	Olfr507	frameshift deletion	Olfr507:NM_146743:exon1:c.934delA:p.T314Hfs*3	7qE3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.344444444	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3325T1	chr7	127386617	PW2017tail	colon	sgMlh1	127386617	T	G	SNV	Mutect2;Vardict	2	0.031	179	0	0	NA	exonic	9130019O22Rik	nonsynonymous SNV	9130019O22Rik:NM_030226:exon2:c.A201C:p.K67N	7qF3	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.114814815	3	0.9967983	GTT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	141232464	PW2017tail	colon	sgMlh1	141232464	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	90	0	0	NA	exonic	Phrf1	nonsynonymous SNV	Phrf1:NM_001081118:exon3:c.G140A:p.G47D	7qF5	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.225925926	2	0.8657074	GGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr7	141448020	PW2017tail	colon	sgMlh1	141448020	C	A	SNV	Mutect2;Vardict	2	0.054	83	0	0	NA	exonic	Rplp2	synonymous SNV	"Rplp2:NM_001360657:exon2:c.C112A:p.R38R,Rplp2:NM_001360658:exon2:c.C112A:p.R38R,Rplp2:NM_026020:exon2:c.C112A:p.R38R"	7qF5	chr7-4477867-142893198	2	1	1	0.54	2	NON-ABERRANT	1	0.2	2	9.15E-07	TCG	synonymous	NA	NA	NA	NA
PW3325T1	chr8	15925351	PW2017tail	colon	sgMlh1	15925351	G	A	SNV	Mutect2;Vardict	2	0.06	72	0	0	NA	exonic	Csmd1	nonsynonymous SNV	Csmd1:NM_053171:exon57:c.C8857T:p.R2953W	8qA1.1	chr8-3386732-127409529	2	1	1	0.54	2	NON-ABERRANT	1	0.222222222	2	0.8178276	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr8	45025148	PW2017tail	colon	sgMlh1	45025148	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.056	175	0	0	NA	exonic	Fat1	synonymous SNV	Fat1:NM_001081286:exon9:c.T7161C:p.D2387D	8qB1.1	chr8-3386732-127409529	2	1	1	0.54	2	NON-ABERRANT	1	0.207407407	2	0.8290233	ATA	synonymous	NA	NA	NA	NA
PW3325T1	chr8	72469907	PW2017tail	colon	sgMlh1	72469907	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	82	0	0	NA	exonic	Cherp	nonsynonymous SNV	"Cherp:NM_001359024:exon5:c.C631T:p.R211W,Cherp:NM_138585:exon5:c.C631T:p.R211W"	8qB3.3	chr8-3386732-127409529	2	1	1	0.54	2	NON-ABERRANT	1	0.2	2	0.6928847	CGC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	7384679	PW2017tail	colon	sgMlh1	7384679	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.063	281	0	0	NA	exonic	Mmp1b	frameshift deletion	Mmp1b:NM_032007:exon6:c.868delG:p.E290Rfs*1	9qA1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.233333333	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr9	15340905	PW2017tail	colon	sgMlh1	15340905	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.047	146	0	0	NA	exonic	Cep295	synonymous SNV	Cep295:NM_176976:exon9:c.A1167G:p.E389E	9qA2	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.174074074	3	0.6751307	GTT	synonymous	NA	NA	NA	NA
PW3325T1	chr9	16375687	PW2017tail	colon	sgMlh1	16375687	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.055	307	0	0	NA	exonic	Fat3	stopgain	Fat3:NM_001080814:exon2:c.C2551T:p.Q851X	9qA2	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	2	0.8555951	TGA	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	18944694	PW2017tail	colon	sgMlh1	18944694	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.19	188	0	0	NA	exonic	Olfr832	nonsynonymous SNV	Olfr832:NM_001011824:exon1:c.G45A:p.M15I	9qA2	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.703703704	1	1.01E-09	TGG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	20502072	PW2017tail	colon	sgMlh1	20502072	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	90	0	0	NA	exonic	Zfp266	synonymous SNV	"Zfp266:NM_001082485:exon7:c.G291A:p.E97E,Zfp266:NM_001135019:exon7:c.G291A:p.E97E"	9qA3	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.22962963	2	0.8819639	ACT	synonymous	NA	NA	NA	NA
PW3325T1	chr9	32239341	PW2017tail	colon	sgMlh1	32239341	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	193	0	0	NA	exonic	Arhgap32	synonymous SNV	"Arhgap32:NM_177379:exon2:c.G36A:p.Q12Q,Arhgap32:NM_001195632:exon11:c.G1083A:p.Q361Q,Arhgap32:NM_001370957:exon11:c.G963A:p.Q321Q,Arhgap32:NM_001370958:exon12:c.G1005A:p.Q335Q"	9qA4	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.166666667	3	0.8591078	AGC	synonymous	NA	NA	NA	NA
PW3325T1	chr9	38775863	PW2017tail	colon	sgMlh1	38775863	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.171	178	0	0	NA	exonic	Olfr921	frameshift deletion	Olfr921:NM_146782:exon3:c.607delG:p.G204Efs*24	9qA5.1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.633333333	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3325T1	chr9	65128616	PW2017tail	colon	sgMlh1	65128616	C	-	Deletion	Mutect2;Vardict	2	0.091	55	0	0	NA	exonic	Igdcc4	frameshift deletion	"Igdcc4:NM_001290315:exon11:c.2034delC:p.P680Qfs*15,Igdcc4:NM_020043:exon11:c.2031delC:p.P679Qfs*15"	9qC	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.337037037	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3325T1	chr9	72910704	PW2017tail	colon	sgMlh1	72910704	T	-	Deletion	Strelka2;Vardict	2	0.0659	91	0	0	NA	exonic	Prtg	frameshift deletion	Prtg:NM_175485:exon19:c.3140delT:p.F1049Sfs*29	9qD	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.244074074	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3325T1	chr9	105439414	PW2017tail	colon	sgMlh1	105439414	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	196	0	0	NA	exonic	Atp2c1	nonsynonymous SNV	"Atp2c1:NM_001253831:exon16:c.T1439C:p.I480T,Atp2c1:NM_001253836:exon16:c.T1289C:p.I430T,Atp2c1:NM_001359823:exon16:c.T1289C:p.I430T,Atp2c1:NM_001253834:exon17:c.T1337C:p.I446T,Atp2c1:NM_175025:exon17:c.T1337C:p.I446T,Atp2c1:NM_001359822:exon18:c.T1349C:p.I450T"	9qF1	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.107407407	3	0.9990802	GAT	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	110381564	PW2017tail	colon	sgMlh1	110381564	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.156	50	0	0	NA	exonic	Scap	nonsynonymous SNV	"Scap:NM_001001144:exon18:c.T2963C:p.V988A,Scap:NM_001103162:exon18:c.T2963C:p.V988A"	9qF2	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.577777778	1	0.9227808	GTG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	111258479	PW2017tail	colon	sgMlh1	111258543	CCATCCTCACCGTGATCAGGGTGCCCTGGTTGCCTGCACAGGGTTTAGGAGGGGCTTGCAGCTTT	-	Deletion	Mutect2;Vardict	2	0.173	87	0	0	NA	exonic	Mlh1	frameshift deletion	Mlh1:NM_026810:exon5:c.399_453del:p.K134Wfs*7	9qF3	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.640740741	NA	NA	CCC	frameshift	NA	NA	NA	-65
PW3325T1	chr9	119153697	PW2017tail	colon	sgMlh1	119153697	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.155	217	0	0	NA	exonic	Acaa1b	nonsynonymous SNV	Acaa1b:NM_146230:exon5:c.G419T:p.G140V	9qF3	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.574074074	1	0.9999977	CCC	nonsynonymous	NA	NA	NA	NA
PW3325T1	chr9	119905414	PW2017tail	colon	sgMlh1	119905414	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.072	132	0	0	NA	exonic	Wdr48	nonsynonymous SNV	Wdr48:NM_026236:exon5:c.C398T:p.A133V	9qF3	chr9-5306814-123664738	2	1	1	0.54	2	NON-ABERRANT	1	0.266666667	2	0.9919495	GCG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chrX	49886244	PW2017tail	colon	sgMlh1	49886244	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	136	0	0	NA	exonic	Olfr1322	nonsynonymous SNV	Olfr1322:NM_001011794:exon1:c.C158A:p.P53H	XqA5	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.181481481	NA	NA	GGG	nonsynonymous	NA	NA	NA	NA
PW3325T1	chrX	64272052	PW2017tail	colon	sgMlh1	64272052	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	349	0	0	NA	exonic	Slitrk4	synonymous SNV	"Slitrk4:NM_001365112:exon2:c.G1008A:p.V336V,Slitrk4:NM_178740:exon3:c.G1008A:p.V336V,Slitrk4:NM_001365111:exon4:c.G1008A:p.V336V"	XqA7.1	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.174074074	NA	NA	GCA	synonymous	NA	NA	NA	NA
PW3325T1	chrX	90892290	PW2017tail	colon	sgMlh1	90892290	A	-	Deletion	Strelka2;Vardict	2	0.0824	85	0	0	NA	exonic	Gm44	frameshift deletion	Gm44:NM_001101450:exon1:c.149delA:p.K52Nfs*5	XqC1	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.305185185	NA	NA	GAA	frameshift	A	8	AAAAAAAA	-1
PW3325T1	chrX	112121037	PW2017tail	colon	sgMlh1	112121037	T	-	Deletion	Mutect2;Vardict	2	0.066	81	0	0	NA	exonic	Tex16	frameshift deletion	Tex16:NM_031382:exon3:c.3199delT:p.L1068fs*0	XqE1	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.244444444	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3328T1	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.537	34	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-9545471-181142282	2	2	0	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	2	1	1	0.9250927	GCG	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr13	92274787	PW2017tail	colon	sgMsh3	92274808	GGAGCCTCCACGATGAGTGCTC	-	Deletion	Strelka2;Vardict	2	0.4717	53	0	0	NA	exonic	Msh3	frameshift deletion	"Msh3:NM_001311120:exon14:c.1880_1901del:p.R627Lfs*10,Msh3:NM_010829:exon14:c.1880_1901del:p.R627Lfs*10"	13qC3	chr13-6603014-117810030	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.655138889	NA	NA	AGG	frameshift	NA	NA	NA	-22
PW3328T1	chr13	117810030	PW2017tail	colon	sgMsh3	117810030	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.205	77	0	0	NA	exonic	Hcn1	nonsynonymous SNV	Hcn1:NM_010408:exon3:c.T940C:p.F314L	13qD2.3	chr13-6603014-117810030	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.569444444	2	0.9945709	CTT	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr15	47741238	PW2017tail	colon	sgMsh3	47741238	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.204	63	0	0	NA	exonic	Csmd3	nonsynonymous SNV	Csmd3:NM_001081391:exon36:c.A5841C:p.K1947N	15qB3.3	chr15-25940791-101438564	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.566666667	2	0.9868087	CTT	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr17	35344876	PW2017tail	colon	sgMsh3	35344876	C	G	SNV	Mutect2;Vardict	2	0.018	368	0	0	NA	exonic	H2-Q2	nonsynonymous SNV	"H2-Q2:NM_001368740:exon4:c.C732G:p.D244E,H2-Q2:NM_010392:exon4:c.C732G:p.D244E"	17qB1	chr17-3505882-89046578	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.05	3	1	ACC	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr17	44017787	PW2017tail	colon	sgMsh3	44017787	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.299	180	0	0	NA	exonic	Rcan2	nonsynonymous SNV	"Rcan2:NM_030598:exon2:c.C108A:p.F36L,Rcan2:NM_001286653:exon3:c.C246A:p.F82L,Rcan2:NM_001286654:exon3:c.C108A:p.F36L,Rcan2:NM_001357742:exon3:c.C246A:p.F82L,Rcan2:NM_207649:exon3:c.C246A:p.F82L"	17qB3	chr17-3505882-89046578	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.830555556	1	0.9601617	TCC	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr17	67764791	PW2017tail	colon	sgMsh3	67764791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.46	93	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon19:c.G2672A:p.R891K	17qE1.1	chr17-3505882-89046578	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.638888889	2	0.9849759	AGG	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr18	35619624	PW2017tail	colon	sgMsh3	35619624	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.292	71	0	0	NA	exonic	Slc23a1	synonymous SNV	Slc23a1:NM_011397:exon14:c.G1599A:p.Q533Q	18qB2	chr18-10104325-80029339	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.811111111	1	0.6944616	ACT	synonymous	NA	NA	NA	NA
PW3328T1	chr18	56749741	PW2017tail	colon	sgMsh3	56749743	GAG	-	Deletion	Strelka2;Vardict	2	0.1111	45	0	0	NA	exonic	Lmnb1	nonframeshift deletion	Lmnb1:NM_010721:exon10:c.1657_1659del:p.E561del	18qD3	chr18-10104325-80029339	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.308611111	NA	NA	CGA	inframe	GAG	27	GAGGAGGAGGAGGAGGAGGAGGAGGAG	-3
PW3328T1	chr2	120871024	PW2017tail	colon	sgMsh3	120871024	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.071	98	0	0	NA	exonic	Ubr1	synonymous SNV	Ubr1:NM_009461:exon43:c.A4746G:p.L1582L	2qE5	chr2-4992200-177316175	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.197222222	3	0.9999946	GTA	synonymous	NA	NA	NA	NA
PW3328T1	chr3	98742607	PW2017tail	colon	sgMsh3	98742607	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.238	326	0	0	NA	exonic	Hsd3b3	synonymous SNV	"Hsd3b3:NM_001012306:exon3:c.T234G:p.S78S,Hsd3b3:NM_001161744:exon4:c.T399G:p.S133S,Hsd3b3:NM_001161745:exon4:c.T399G:p.S133S,Hsd3b3:NM_001161742:exon5:c.T399G:p.S133S,Hsd3b3:NM_001161743:exon5:c.T399G:p.S133S"	3qF2.2	chr3-15331938-157146109	2	2	0	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.661111111	2	0.9999957	AAG	synonymous	NA	NA	NA	NA
PW3328T1	chr5	87081004	PW2017tail	colon	sgMsh3	87081004	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	306	0	0	NA	exonic	Ugt2b36	synonymous SNV	Ugt2b36:NM_001029867:exon5:c.C1179G:p.G393G	5qE1	chr5-8087898-149696570	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	1	1	1.19E-09	TGC	synonymous	NA	NA	NA	NA
PW3328T1	chr5	120483599	PW2017tail	colon	sgMsh3	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.509	10	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-8087898-149696570	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	1	1	0.6810397	CGC	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr6	42956131	PW2017tail	colon	sgMsh3	42956131	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.07	258	0	0	NA	exonic	Olfr444	nonsynonymous SNV	Olfr444:NM_146656:exon1:c.G632A:p.C211Y	6qB2.1	chr6-8175131-149014300	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.194444444	3	1.00E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr6	80022730	PW2017tail	colon	sgMsh3	80022730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.531	102	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001282102:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001347261:exon2:c.C1121T:p.A374V,Lrrtm4:NM_178731:exon2:c.C1121T:p.A374V"	6qC3	chr6-8175131-149014300	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	1	1	0.9994364	GCG	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr7	114032975	PW2017tail	colon	sgMsh3	114032975	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	86	0	0	NA	exonic	Spon1	nonsynonymous SNV	Spon1:NM_145584:exon12:c.C1532T:p.S511L	7qF1	chr7-4743149-141858900	2	1	1	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.144444444	3	0.9999996	TCG	nonsynonymous	NA	NA	NA	NA
PW3328T1	chr9	121780408	PW2017tail	colon	sgMsh3	121780408	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.288	106	0	0	NA	exonic	Klhl40	synonymous SNV	Klhl40:NM_028202:exon3:c.C1350T:p.Y450Y	9qF4	chr9-7282188-123664738	2	2	0	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.8	1	0.6952847	ACG	synonymous	NA	NA	NA	NA
PW3328T1	chrX	36795828	PW2017tail	colon	sgMsh3	36795828	-	GCTGCT	Insertion	Mutect2;Vardict	2	0.104	29	0	0	NA	exonic	Slc25a5	nonframeshift insertion	Slc25a5:NM_007451:exon1:c.98_99insGCTGCT:p.L36_Q37insLL	XqA3.3	chrX-7946841-169987429	2	2	0	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.288888889	NA	NA	AAG	inframe	GCT	11	GCTGCTGCTGC	6
PW3328T1	chrX	107103424	PW2017tail	colon	sgMsh3	107103424	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	217	0	0	NA	exonic	P2ry10	nonsynonymous SNV	"P2ry10:NM_001357810:exon3:c.A964G:p.S322G,P2ry10:NM_172435:exon3:c.A964G:p.S322G"	XqD	chrX-7946841-169987429	2	2	0	0.72	2	NON-ABERRANT;POOR GOF (77.5%)	1	0.158333333	NA	NA	GAG	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr1	53182506	PW2017tail	colon	sgMsh3	53182506	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	146	0	0	NA	exonic	1700019A02Rik	nonsynonymous SNV	"1700019A02Rik:NM_027070:exon3:c.G163A:p.D55N,1700019A02Rik:NM_001368200:exon4:c.G163A:p.D55N"	1qC1.1	chr1-6233869-194959842	2	2	0	0.64	2	NON-ABERRANT	1	0.171875	3	0.9999777	TCG	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr1	116454989	PW2017tail	colon	sgMsh3	116454995	GCAGAAA	-	Deletion	Mutect2;Strelka2	2	0.066	197	0	0	NA	exonic	Cntnap5a	nonframeshift deletion	"Cntnap5a:NM_001077425:exon19:c.2990_2992del:p.E997_I998delinsV,Cntnap5a:NM_001371013:exon19:c.2993_2995del:p.E998_I999delinsV"	1qE2.3	chr1-6233869-194959842	2	2	0	0.64	2	NON-ABERRANT	1	0.20625	NA	NA	TGC	inframe	T	6	TTTTTT	-7
PW3328T2	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.396	44	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6233869-194959842	2	2	0	0.64	2	NON-ABERRANT	1	0.61875	1	8.84E-05	GCG	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr11	99643940	PW2017tail	colon	sgMsh3	99643940	A	G	SNV	Mutect2;Vardict	2	0.022	249	0	0	NA	exonic	Krtap4-7	synonymous SNV	Krtap4-7:NM_029613:exon1:c.T96C:p.P32P	11qD	chr11-3132249-120783193	2	1	1	0.64	2	NON-ABERRANT	1	0.06875	3	1.00E-09	GAG	synonymous	NA	NA	NA	NA
PW3328T2	chr13	84251223	PW2017tail	colon	sgMsh3	84251231	CACACAGGG	-	Deletion	Mutect2;Strelka2	2	0.077	161	0	0	NA	exonic	Tmem161b	frameshift deletion	Tmem161b:NM_175187:exon2:c.4_5del:p.G2Cfs*31	13qC3	chr13-3932610-113346664	2	1	1	0.64	2	NON-ABERRANT	1	0.240625	NA	NA	TCA	frameshift	T	6	TTTTTT	-9
PW3328T2	chr14	103191592	PW2017tail	colon	sgMsh3	103191592	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	208	0	0	NA	exonic	Mycbp2	nonsynonymous SNV	Mycbp2:NM_207215:exon48:c.C7147T:p.R2383C	14qE2.3	chr14-3072210-123592557	2	1	1	0.64	2	NON-ABERRANT	1	0.209375	3	0.9999594	CGC	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr17	58974670	PW2017tail	colon	sgMsh3	58974670	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	323	0	0	NA	exonic	Pdzph1	nonsynonymous SNV	Pdzph1:NM_027001:exon3:c.C616A:p.P206T	17qD	chr17-6699480-78922322	2	1	1	0.64	2	NON-ABERRANT	1	0.15	3	1.00E-09	GGA	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr17	67764791	PW2017tail	colon	sgMsh3	67764791	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.471	95	0	0	NA	exonic	Lama1	nonsynonymous SNV	Lama1:NM_008480:exon19:c.G2672A:p.R891K	17qE1.1	chr17-6699480-78922322	2	1	1	0.64	2	NON-ABERRANT	1	0.7359375	1	0.9926473	AGG	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr18	34312293	PW2017tail	colon	sgMsh3	34312320	GCCATCCCTTCACGTTAGGAAACAGAAA	-	Deletion	Strelka2;Vardict	2	0.1667	102	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2064_2091del:p.P689Lfs*1,Apc:NM_007462:exon16:c.2241_2268del:p.P748Lfs*1,Apc:NM_001360980:exon17:c.2295_2322del:p.P766Lfs*1"	18qB1	chr18-10104325-80194980	2	1	1	0.64	2	NON-ABERRANT	1	0.5209375	NA	NA	TGC	frameshift	NA	NA	NA	-28
PW3328T2	chr18	34312302	PW2017tail	colon	sgMsh3	34312305	TCAC	-	Deletion	Strelka2;Vardict	2	0.0886	79	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2073_2076del:p.H692Lfs*6,Apc:NM_007462:exon16:c.2250_2253del:p.H751Lfs*6,Apc:NM_001360980:exon17:c.2304_2307del:p.H769Lfs*6"	18qB1	chr18-10104325-80194980	2	1	1	0.64	2	NON-ABERRANT	1	0.276875	NA	NA	TTC	frameshift	NA	NA	NA	-4
PW3328T2	chr18	34312521	PW2017tail	colon	sgMsh3	34312521	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.107	155	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2292delT:p.L765fs*0,Apc:NM_007462:exon16:c.2469delT:p.L824fs*0,Apc:NM_001360980:exon17:c.2523delT:p.L842fs*0"	18qB1	chr18-10104325-80194980	2	1	1	0.64	2	NON-ABERRANT	1	0.334375	NA	NA	ATT	frameshift	NA	NA	NA	-1
PW3328T2	chr18	34312661	PW2017tail	colon	sgMsh3	34312661	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.159	122	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2432delC:p.S812Hfs*14,Apc:NM_007462:exon16:c.2609delC:p.S871Hfs*14,Apc:NM_001360980:exon17:c.2663delC:p.S889Hfs*14"	18qB1	chr18-10104325-80194980	2	1	1	0.64	2	NON-ABERRANT	1	0.496875	NA	NA	ACC	frameshift	NA	NA	NA	-1
PW3328T2	chr2	48898564	PW2017tail	colon	sgMsh3	48898564	A	-	Deletion	Strelka2;Vardict	2	0.1048	210	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.3275	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3328T2	chr2	83768686	PW2017tail	colon	sgMsh3	83768692	GCACAGG	-	Deletion	Mutect2;Strelka2	2	0.094	142	0	0	NA	exonic	Itgav	frameshift deletion	Itgav:NM_008402:exon10:c.847delG:p.V283Ffs*27	2qD	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.29375	NA	NA	TGC	frameshift	T	8	TTTTTTTT	-7
PW3328T2	chr2	86553636	PW2017tail	colon	sgMsh3	86553636	T	C	SNV	Mutect2;MuSe;Vardict	3	0.081	509	0	0	NA	exonic	Olfr1080	nonsynonymous SNV	Olfr1080:NM_146409:exon2:c.A487G:p.I163V	2qD	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.253125	3	0.9999492	ATA	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr2	86890950	PW2017tail	colon	sgMsh3	86890950	G	T	SNV	Mutect2;Vardict	2	0.028	423	0	0	NA	exonic	Olfr1097	nonsynonymous SNV	Olfr1097:NM_146843:exon2:c.C224A:p.T75N	2qD	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.0875	3	1	AGT	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr2	89406384	PW2017tail	colon	sgMsh3	89406384	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.142	202	0	0	NA	exonic	Olfr1238	nonsynonymous SNV	Olfr1238:NM_146790:exon1:c.C694T:p.R232C	2qE1	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.44375	2	0.9999996	CGT	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr2	90708128	PW2017tail	colon	sgMsh3	90708136	CATAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.125	238	0	0	NA	exonic	Nup160	frameshift deletion	Nup160:NM_021512:exon20:c.2274_2277del:p.E759Lfs*10	2qE1	chr2-13278254-180281766	2	1	1	0.64	2	NON-ABERRANT	1	0.390625	NA	NA	TCA	frameshift	T	7	TTTTTTT	-9
PW3328T2	chr3	109935207	PW2017tail	colon	sgMsh3	109935207	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	147	0	0	NA	exonic	Ntng1	synonymous SNV	"Ntng1:NM_001163348:exon3:c.C249A:p.G83G,Ntng1:NM_001163349:exon3:c.C249A:p.G83G,Ntng1:NM_001163350:exon3:c.C249A:p.G83G,Ntng1:NM_030699:exon3:c.C249A:p.G83G,Ntng1:NM_133488:exon3:c.C249A:p.G83G"	3qF3	chr3-15331914-157160743	2	1	1	0.64	2	NON-ABERRANT	1	0.1375	3	0.9999991	TGC	synonymous	NA	NA	NA	NA
PW3328T2	chr4	103049461	PW2017tail	colon	sgMsh3	103049461	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.209	74	0	0	NA	exonic	Wdr78	synonymous SNV	Wdr78:NM_146254:exon15:c.C2154T:p.S718S	4qC6	chr4-15962237-155955222	2	1	1	0.64	2	NON-ABERRANT	1	0.653125	1	0.7859177	CGG	synonymous	NA	NA	NA	NA
PW3328T2	chr5	87081004	PW2017tail	colon	sgMsh3	87081004	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.494	370	0	0	NA	exonic	Ugt2b36	synonymous SNV	Ugt2b36:NM_001029867:exon5:c.C1179G:p.G393G	5qE1	chr5-8057522-150052642	2	2	0	0.64	2	NON-ABERRANT	2	0.771875	1	1.04E-09	TGC	synonymous	NA	NA	NA	NA
PW3328T2	chr5	120483599	PW2017tail	colon	sgMsh3	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.563	15	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-8057522-150052642	2	2	0	0.64	2	NON-ABERRANT	2	1	1	0.934127	CGC	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr6	80022730	PW2017tail	colon	sgMsh3	80022730	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.449	145	0	0	NA	exonic	Lrrtm4	nonsynonymous SNV	"Lrrtm4:NM_001134743:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001282102:exon2:c.C1124T:p.A375V,Lrrtm4:NM_001347261:exon2:c.C1121T:p.A374V,Lrrtm4:NM_178731:exon2:c.C1121T:p.A374V"	6qC3	chr6-8175131-137527007	2	1	1	0.64	2	NON-ABERRANT	1	0.7015625	1	0.9948174	GCG	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr7	12193446	PW2017tail	colon	sgMsh3	12193446	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	258	0	0	NA	exonic	Vmn1r80	nonsynonymous SNV	Vmn1r80:NM_134204:exon1:c.A482C:p.N161T	7qA1	chr7-3841416-141858900	2	1	1	0.64	2	NON-ABERRANT	1	0.515625	2	0.9999836	AAC	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr7	14122939	PW2017tail	colon	sgMsh3	14122939	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	315	0	0	NA	exonic	Sult2a3	nonsynonymous SNV	Sult2a3:NM_001101586:exon1:c.C55A:p.Q19K	7qA1	chr7-3841416-141858900	2	1	1	0.64	2	NON-ABERRANT	1	0.153125	3	1.01E-09	TGA	nonsynonymous	T	5	TTTTT	NA
PW3328T2	chr7	119464730	PW2017tail	colon	sgMsh3	119464730	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	176	0	0	NA	exonic	Umod	nonsynonymous SNV	"Umod:NM_001278605:exon10:c.G1852T:p.A618S,Umod:NM_009470:exon10:c.G1852T:p.A618S"	7qF2	chr7-3841416-141858900	2	1	1	0.64	2	NON-ABERRANT	1	0.14375	3	0.9999999	GCA	nonsynonymous	NA	NA	NA	NA
PW3328T2	chr9	66399903	PW2017tail	colon	sgMsh3	66399943	ATTAATAATGTTACTGAGGTATGAATTCTATGCTTTTCATG	-	Deletion	Mutect2;Vardict	2	0.026	284	0	0	NA	exonic	Herc1	nonframeshift deletion	Herc1:NM_145617:exon15:c.3004_3021del:p.I1002_E1007del	9qC	chr9-3342997-123664738	2	2	0	0.64	2	NON-ABERRANT	1	0.08125	NA	NA	CAT	inframe	NA	NA	NA	-41
PW3328T2	chr9	116822838	PW2017tail	colon	sgMsh3	116822838	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.138	180	0	0	NA	exonic	Rbms3	nonsynonymous SNV	"Rbms3:NM_001172122:exon5:c.A443G:p.E148G,Rbms3:NM_001172123:exon5:c.A443G:p.E148G,Rbms3:NM_001172124:exon5:c.A443G:p.E148G,Rbms3:NM_001172126:exon5:c.A443G:p.E148G,Rbms3:NM_178660:exon5:c.A443G:p.E148G,Rbms3:NM_001172121:exon6:c.A590G:p.E197G"	9qF3	chr9-3342997-123664738	2	2	0	0.64	2	NON-ABERRANT	1	0.43125	2	0.9999991	CTC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr1	20520247	PW2017tail	colon	sgMlh1	20520247	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	146	0	0	NA	exonic	Pkhd1	nonsynonymous SNV	Pkhd1:NM_153179:exon33:c.G5275A:p.G1759R	1qA4	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.119354839	3	0.9999907	CCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr1	36191534	PW2017tail	colon	sgMlh1	36191534	C	T	SNV	Mutect2;Vardict	2	0.053	157	0	0	NA	exonic	Uggt1	synonymous SNV	Uggt1:NM_198899:exon15:c.G1578A:p.P526P	1qB	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	3	0.9995785	GCG	synonymous	NA	NA	NA	NA
PW3330T1	chr1	39372466	PW2017tail	colon	sgMlh1	39372466	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.139	137	0	0	NA	exonic	Tbc1d8	frameshift deletion	"Tbc1d8:NM_001357521:exon20:c.3333delT:p.F1111Lfs*25,Tbc1d8:NM_018775:exon20:c.3288delT:p.F1096Lfs*25"	1qB	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.448387097	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr1	59702881	PW2017tail	colon	sgMlh1	59702881	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	136	0	0	NA	exonic	Nop58	nonsynonymous SNV	Nop58:NM_018868:exon7:c.C568T:p.H190Y	1qC2	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.2	3	0.9891751	GCA	nonsynonymous	TGGC	8	TGGCTGGC	NA
PW3330T1	chr1	85099625	PW2017tail	colon	sgMlh1	85099625	G	A	SNV	Mutect2;Vardict	2	0.042	134	0	0	NA	exonic	A530032D15Rik	synonymous SNV	A530032D15Rik:NM_213615:exon3:c.C219T:p.N73N	1qC5	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.135483871	3	0.9999191	GGT	synonymous	NA	NA	NA	NA
PW3330T1	chr1	91434695	PW2017tail	colon	sgMlh1	91434695	G	-	Deletion	Mutect2;Vardict	2	0.049	113	0	0	NA	exonic	Per2	frameshift deletion	Per2:NM_011066:exon12:c.1337delC:p.P446Rfs*22	1qD	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.158064516	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3330T1	chr1	126024410	PW2017tail	colon	sgMlh1	126024410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.068	217	0	0	NA	exonic	Nckap5	synonymous SNV	"Nckap5:NM_172484:exon10:c.C4404T:p.D1468D,Nckap5:NM_001081756:exon12:c.C4608T:p.D1536D"	1qE3	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.219354839	3	0.989637	CGT	synonymous	NA	NA	NA	NA
PW3330T1	chr1	134994010	PW2017tail	colon	sgMlh1	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.525	38	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	2	1	1	0.9991313	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr1	156310975	PW2017tail	colon	sgMlh1	156310975	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.133	29	0	0	NA	exonic	Nphs2	nonsynonymous SNV	Nphs2:NM_130456:exon1:c.C188A:p.T63N	1qG3	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.429032258	2	0.9203421	ACC	nonsynonymous	GCCACC	13	GCCACCGCCACCG	NA
PW3330T1	chr1	161020105	PW2017tail	colon	sgMlh1	161020105	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	169	0	0	NA	exonic	Zbtb37	nonsynonymous SNV	"Zbtb37:NM_001356489:exon5:c.C1331T:p.A444V,Zbtb37:NM_173424:exon5:c.C1331T:p.A444V"	1qH2.1	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.167741935	3	0.9998247	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr1	186967981	PW2017tail	colon	sgMlh1	186967981	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	84	0	0	NA	exonic	D1Pas1	nonsynonymous SNV	D1Pas1:NM_033077:exon1:c.G106T:p.G36W	1qH5	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.319354839	2	0.9439293	AGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr1	191396377	PW2017tail	colon	sgMlh1	191396377	C	T	SNV	Mutect2;Vardict	2	0.167	19	0	0	NA	exonic	Ppp2r5a	nonsynonymous SNV	Ppp2r5a:NM_144880:exon1:c.G40A:p.A14T	1qH6	chr1-6233869-193035620	2	2	0	0.62	2	NON-ABERRANT	1	0.538709677	2	0.8633567	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr10	21364679	PW2017tail	colon	sgMlh1	21364679	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	195	0	0	NA	exonic	Hbs1l	nonsynonymous SNV	"Hbs1l:NM_001042593:exon16:c.T1787G:p.L596R,Hbs1l:NM_019702:exon16:c.T1796G:p.L599R"	10qA3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.361290323	2	0.9999922	CTG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr10	74626775	PW2017tail	colon	sgMlh1	74626780	CCGCCC	-	Deletion	Strelka2;Vardict	2	0.119	42	0	0	NA	exonic	Pcdh15	nonframeshift deletion	"Pcdh15:NM_001142738:exon30:c.4180_4185del:p.P1402_P1403del,Pcdh15:NM_001142740:exon31:c.4291_4296del:p.P1439_P1440del,Pcdh15:NM_001142736:exon32:c.4300_4305del:p.P1442_P1443del,Pcdh15:NM_001142743:exon32:c.4300_4305del:p.P1442_P1443del"	10qB5.3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.383870968	NA	NA	GCC	inframe	CTGCGC	13	CTGCGCCTGCGCC	-6
PW3330T1	chr10	75581371	PW2017tail	colon	sgMlh1	75581371	T	-	Deletion	Mutect2;Vardict	2	0.052	164	0	0	NA	exonic	Ggt1	frameshift deletion	"Ggt1:NM_008116:exon8:c.955delT:p.R320Gfs*20,Ggt1:NM_001305992:exon9:c.955delT:p.R320Gfs*20,Ggt1:NM_001379540:exon9:c.955delT:p.R320Gfs*20,Ggt1:NM_001379541:exon9:c.955delT:p.R320Gfs*20,Ggt1:NM_001379537:exon10:c.955delT:p.R320Gfs*20,Ggt1:NM_001379538:exon10:c.955delT:p.R320Gfs*20,Ggt1:NM_001379539:exon10:c.955delT:p.R320Gfs*20"	10qC1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.167741935	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3330T1	chr10	93489231	PW2017tail	colon	sgMlh1	93489231	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	187	0	0	NA	exonic	Hal	nonsynonymous SNV	Hal:NM_010401:exon1:c.G101A:p.R34H	10qC2	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.116129032	3	0.9999997	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr10	111493423	PW2017tail	colon	sgMlh1	111493423	T	-	Deletion	Mutect2;Vardict	2	0.032	278	0	0	NA	exonic	Nap1l1	frameshift deletion	"Nap1l1:NM_001358932:exon8:c.708delT:p.F238Lfs*33,Nap1l1:NM_015781:exon10:c.897delT:p.F301Lfs*33"	10qD1	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chr10	121615116	PW2017tail	colon	sgMlh1	121615116	A	-	Deletion	Strelka2;Vardict	2	0.0846	130	0	0	NA	exonic	Xpot	frameshift deletion	"Xpot:NM_001081056:exon6:c.378delT:p.F126Lfs*8,Xpot:NM_001359618:exon6:c.378delT:p.F126Lfs*8"	10qD2	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.272903226	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW3330T1	chr10	128018036	PW2017tail	colon	sgMlh1	128018036	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.049	382	0	0	NA	exonic	Prim1	nonsynonymous SNV	Prim1:NM_008921:exon3:c.T322C:p.F108L	10qD3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.158064516	3	1.63E-09	CTT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr10	128315582	PW2017tail	colon	sgMlh1	128315582	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	94	0	0	NA	exonic	Pan2	synonymous SNV	"Pan2:NM_001252326:exon18:c.C2544T:p.H848H,Pan2:NM_001252327:exon18:c.C2490T:p.H830H,Pan2:NM_001358822:exon18:c.C2157T:p.H719H,Pan2:NM_133992:exon18:c.C2571T:p.H857H"	10qD3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	3	0.9979803	ACA	synonymous	NA	NA	NA	NA
PW3330T1	chr10	128717867	PW2017tail	colon	sgMlh1	128717867	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	173	0	0	NA	exonic	Pmel	stopgain	Pmel:NM_021882:exon7:c.C1369T:p.Q457X	10qD3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.151612903	3	0.999971	CCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr10	130452376	PW2017tail	colon	sgMlh1	130452376	T	-	Deletion	Mutect2;Vardict	2	0.033	379	0	0	NA	exonic	Vmn2r86	frameshift deletion	Vmn2r86:NM_001103365:exon3:c.1255delA:p.M419Wfs*17	10qD3	chr10-5234707-130453386	2	1	1	0.62	2	NON-ABERRANT	1	0.106451613	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chr10	130472684	PW2017tail	colon	sgMlh1	130472684	C	T	SNV	Mutect2;Vardict	2	0.018	443	0	0	NA	exonic	Vmn2r87	nonsynonymous SNV	Vmn2r87:NM_001103366:exon6:c.G1684A:p.A562T	10qD3	NA	NA	NA	NA	0.62	2	NON-ABERRANT	NA	NA	NA	NA	GCA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	6348781	PW2017tail	colon	sgMlh1	6348781	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	77	0	0	NA	exonic	Ogdh	nonsynonymous SNV	"Ogdh:NM_001252287:exon15:c.G2024A:p.G675D,Ogdh:NM_001252288:exon15:c.G2012A:p.G671D,Ogdh:NM_001361904:exon15:c.G2024A:p.G675D,Ogdh:NM_001361905:exon15:c.G2012A:p.G671D,Ogdh:NM_010956:exon15:c.G2024A:p.G675D,Ogdh:NM_001252282:exon16:c.G2069A:p.G690D,Ogdh:NM_001252283:exon16:c.G2057A:p.G686D,Ogdh:NM_001361902:exon16:c.G2057A:p.G686D,Ogdh:NM_001361903:exon16:c.G2057A:p.G686D"	11qA1	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.716129032	1	0.9362276	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	23611978	PW2017tail	colon	sgMlh1	23611978	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	209	0	0	NA	exonic	0610010F05Rik	nonsynonymous SNV	"0610010F05Rik:NM_001347242:exon9:c.G523A:p.A175T,0610010F05Rik:NM_027860:exon9:c.G961A:p.A321T"	11qA3.2	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.112903226	3	3.53E-08	GCA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	29141761	PW2017tail	colon	sgMlh1	29141761	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	157	0	0	NA	exonic	Pnpt1	nonsynonymous SNV	Pnpt1:NM_027869:exon13:c.A1171G:p.T391A	11qA3.3	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.132258065	3	0.9999872	AAC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	49280420	PW2017tail	colon	sgMlh1	49280420	A	G	SNV	Mutect2;Vardict	2	0.019	508	0	0	NA	exonic	Olfr1393	nonsynonymous SNV	Olfr1393:NM_146471:exon1:c.A271G:p.T91A	11qB1.2	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.061290323	3	1	GAC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	58651401	PW2017tail	colon	sgMlh1	58651401	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.062	120	0	0	NA	exonic	Trim58	nonsynonymous SNV	Trim58:NM_001039047:exon6:c.T1186C:p.S396P	11qB1.3	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.2	3	0.9825293	CTC	nonsynonymous	GTCCT	10	GTCCTGTCCT	NA
PW3330T1	chr11	72910192	PW2017tail	colon	sgMlh1	72910192	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	193	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon45:c.C7164A:p.D2388E	11qB4	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.129032258	3	0.9999993	ACC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	82788806	PW2017tail	colon	sgMlh1	82788806	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.045	97	0	0	NA	exonic	Lig3	nonsynonymous SNV	"Lig3:NM_001291245:exon5:c.T938C:p.L313P,Lig3:NM_001291246:exon5:c.T935C:p.L312P,Lig3:NM_001291247:exon5:c.T935C:p.L312P,Lig3:NM_010716:exon5:c.T938C:p.L313P"	11qC	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	3	0.9983218	CTG	nonsynonymous	GCT	11	GCTGCTGCTGC	NA
PW3330T1	chr11	87780926	PW2017tail	colon	sgMlh1	87780926	C	-	Deletion	Mutect2;Vardict	2	0.059	113	0	0	NA	exonic	Tspoap1	frameshift deletion	Tspoap1:NM_172449:exon26:c.5170delC:p.K1726Sfs*22	11qC	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.190322581	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr11	94299956	PW2017tail	colon	sgMlh1	94299956	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.039	270	0	0	NA	exonic	Luc7l3	synonymous SNV	"Luc7l3:NM_001361573:exon6:c.G531A:p.S177S,Luc7l3:NM_001361574:exon6:c.G531A:p.S177S,Luc7l3:NM_001361575:exon6:c.G531A:p.S177S,Luc7l3:NM_026313:exon6:c.G531A:p.S177S"	11qD	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.125806452	3	2.88E-09	CCG	synonymous	NA	NA	NA	NA
PW3330T1	chr11	101164056	PW2017tail	colon	sgMlh1	101164056	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.319	17	0	0	NA	exonic	Plekhh3	nonsynonymous SNV	"Plekhh3:NM_001346769:exon11:c.C1961T:p.P654L,Plekhh3:NM_146030:exon11:c.C1970T:p.P657L"	11qD	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	1	1	0.9164754	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr11	115994401	PW2017tail	colon	sgMlh1	115994401	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.051	154	0	0	NA	exonic	Itgb4	frameshift deletion	"Itgb4:NM_001005608:exon26:c.3105delC:p.H1035Qfs*25,Itgb4:NM_133663:exon26:c.3105delC:p.H1035Qfs*25"	11qE2	chr11-3132249-121908224	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	NA	NA	ACG	frameshift	NA	NA	NA	-1
PW3330T1	chr12	11457275	PW2017tail	colon	sgMlh1	11457275	A	-	Deletion	Strelka2;Vardict	2	0.1333	45	0	0	NA	exonic	Rad51ap2	frameshift deletion	Rad51ap2:NM_001111118:exon1:c.1197delA:p.I402Lfs*8	12qA1.1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.43	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3330T1	chr12	81560579	PW2017tail	colon	sgMlh1	81560579	C	-	Deletion	Mutect2;Vardict	2	0.054	184	0	0	NA	exonic	Adam21	frameshift deletion	Adam21:NM_020330:exon2:c.408delG:p.L137Cfs*6	12qD1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.174193548	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3330T1	chr12	84786025	PW2017tail	colon	sgMlh1	84786025	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.143	72	0	0	NA	exonic	Ltbp2	frameshift deletion	"Ltbp2:NM_013589:exon31:c.4504delC:p.L1502Sfs*2,Ltbp2:NM_001370743:exon32:c.4633delC:p.L1545Sfs*2"	12qD1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.461290323	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr12	85015386	PW2017tail	colon	sgMlh1	85015386	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	192	0	0	NA	exonic	Ylpm1	nonsynonymous SNV	"Ylpm1:NM_001347421:exon4:c.C2060T:p.T687I,Ylpm1:NM_178363:exon4:c.C2060T:p.T687I"	12qD1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.116129032	3	0.9999998	ACC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr12	89510516	PW2017tail	colon	sgMlh1	89510516	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.308	164	0	0	NA	exonic	Nrxn3	nonsynonymous SNV	"Nrxn3:NM_172544:exon10:c.T1468C:p.F490L,Nrxn3:NM_001198587:exon11:c.T2587C:p.F863L"	12qD3	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.993548387	1	1.00E-09	CTT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr12	102899469	PW2017tail	colon	sgMlh1	102899469	A	-	Deletion	Strelka2;Vardict	2	0.0946	74	0	0	NA	exonic	Cox8c	frameshift deletion	Cox8c:NM_001039049:exon1:c.104delA:p.I38Sfs*25	12qE	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.30516129	NA	NA	CAA	frameshift	A	9	AAAAAAAAA	-1
PW3330T1	chr12	112042755	PW2017tail	colon	sgMlh1	112042755	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.089	146	0	0	NA	exonic	Tdrd9	frameshift deletion	Tdrd9:NM_029056:exon28:c.3094delG:p.G1033Vfs*16	12qF1	chr12-3252726-119173220	2	1	1	0.62	2	NON-ABERRANT	1	0.287096774	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr13	8957810	PW2017tail	colon	sgMlh1	8957810	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	215	0	0	NA	exonic	Idi2	nonsynonymous SNV	Idi2:NM_177197:exon3:c.A156C:p.R52S	13qA1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.396774194	2	2.88E-08	GAG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr13	12423732	PW2017tail	colon	sgMlh1	12423732	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	141	0	0	NA	exonic	Heatr1	synonymous SNV	Heatr1:NM_144835:exon29:c.A4047G:p.T1349T	13qA1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.258064516	2	0.5094039	CAG	synonymous	NA	NA	NA	NA
PW3330T1	chr13	22620743	PW2017tail	colon	sgMlh1	22620743	C	T	SNV	Mutect2;Vardict	2	0.019	410	0	0	NA	exonic	Vmn1r206	nonsynonymous SNV	Vmn1r206:NM_134216:exon1:c.G293A:p.S98N	13qA3.1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.061290323	3	1	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr13	27098686	PW2017tail	colon	sgMlh1	27098686	A	-	Deletion	Mutect2;Vardict	2	0.025	390	0	0	NA	exonic	Prl3d1	frameshift deletion	"Prl3d1:NM_001205322:exon4:c.409delA:p.A139Lfs*9,Prl3d1:NM_008864:exon4:c.406delA:p.A138Lfs*9"	13qA3.1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.080645161	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr13	30871180	PW2017tail	colon	sgMlh1	30871186	CCTGGGC	-	Deletion	Mutect2;Strelka2	2	0.119	58	0	0	NA	exonic	Exoc2	frameshift deletion	"Exoc2:NM_025588:exon20:c.1993delG:p.V665Ffs*8,Exoc2:NM_001360093:exon21:c.1993delG:p.V665Ffs*8"	13qA3.2	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.383870968	NA	NA	ACC	frameshift	A	5	AAAAA	-7
PW3330T1	chr13	55004517	PW2017tail	colon	sgMlh1	55004517	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.127	59	0	0	NA	exonic	Unc5a	frameshift deletion	"Unc5a:NM_001311128:exon14:c.2224delG:p.V744Sfs*36,Unc5a:NM_153131:exon15:c.2392delG:p.V800Sfs*36"	13qB1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.409677419	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr13	74675296	PW2017tail	colon	sgMlh1	74675296	A	-	Deletion	Mutect2;Vardict	2	0.053	144	0	0	NA	exonic	Erap1	frameshift deletion	Erap1:NM_030711:exon17:c.2448delA:p.T818Lfs*24	13qC1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.170967742	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr13	91861809	PW2017tail	colon	sgMlh1	91861809	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	156	0	0	NA	exonic	Ckmt2	nonsynonymous SNV	Ckmt2:NM_198415:exon4:c.C391T:p.H131Y	13qC3	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.358064516	2	0.9998822	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr13	95684877	PW2017tail	colon	sgMlh1	95684877	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	193	0	0	NA	exonic	Iqgap2	nonsynonymous SNV	Iqgap2:NM_027711:exon15:c.C1757T:p.A586V	13qD1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.129032258	3	0.9999993	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr13	97246019	PW2017tail	colon	sgMlh1	97246019	G	-	Deletion	Mutect2;Vardict	2	0.058	105	0	0	NA	exonic	Enc1	frameshift deletion	Enc1:NM_007930:exon2:c.1036delG:p.R348Gfs*38	13qD1	chr13-4065516-119495179	2	1	1	0.62	2	NON-ABERRANT	1	0.187096774	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr14	42794764	PW2017tail	colon	sgMlh1	42794764	A	G	SNV	Mutect2;Vardict	2	0.44	5	0	0	NA	exonic	Gm10377;Gm47189	nonsynonymous SNV	"Gm10377:NM_001244671:exon4:c.T434C:p.I145T,Gm47189:NM_001384240:exon4:c.T434C:p.I145T"	14qB	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.709677419	2	0.580781	TAT	nonsynonymous	T	5	TTTTT	NA
PW3330T1	chr14	43819359	PW2017tail	colon	sgMlh1	43819359	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.348	292	0	0	NA	exonic	Ear1	synonymous SNV	Ear1:NM_007894:exon2:c.A51G:p.G17G	14qC1	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	1	1	1	GTC	synonymous	NA	NA	NA	NA
PW3330T1	chr14	46767212	PW2017tail	colon	sgMlh1	46767212	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	153	0	0	NA	exonic	Cdkn3	nonsynonymous SNV	"Cdkn3:NM_001360041:exon5:c.T230G:p.V77G,Cdkn3:NM_028222:exon5:c.T230G:p.V77G"	14qC1	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.119354839	3	0.9999946	GTT	nonsynonymous	TGTT	9	TGTTTGTTT	NA
PW3330T1	chr14	50126960	PW2017tail	colon	sgMlh1	50126960	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.036	360	0	0	NA	exonic	Olfr727	nonsynonymous SNV	Olfr727:NM_146319:exon1:c.A382G:p.K128E	14qC1	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.116129032	3	1.00E-09	CAA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr14	57450706	PW2017tail	colon	sgMlh1	57450706	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.065	339	0	0	NA	exonic	Ift88	frameshift deletion	Ift88:NM_009376:exon13:c.1080delA:p.N362Mfs*19	14qC3	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr14	64123192	PW2017tail	colon	sgMlh1	64123192	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.194	84	0	0	NA	exonic	Msra	frameshift deletion	"Msra:NM_001253714:exon5:c.630delA:p.K210delinsNNFSPRSCP,Msra:NM_001253715:exon5:c.579delA:p.K193delinsNNFSPRSCP,Msra:NM_001253712:exon6:c.699delA:p.K233delinsNNFSPRSCP,Msra:NM_001253716:exon6:c.573delA:p.K191delinsNNFSPRSCP,Msra:NM_001347639:exon6:c.507delA:p.K169delinsNNFSPRSCP,Msra:NM_026322:exon11:c.699delA:p.K233delinsNNFSPRSCP"	14qD1	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.625806452	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chr14	65076769	PW2017tail	colon	sgMlh1	65076769	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	126	0	0	NA	exonic	Extl3	synonymous SNV	"Extl3:NM_001360385:exon2:c.T963C:p.H321H,Extl3:NM_018788:exon3:c.T963C:p.H321H"	14qD1	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.4	2	0.9999653	CAT	synonymous	NA	NA	NA	NA
PW3330T1	chr14	78510695	PW2017tail	colon	sgMlh1	78510695	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	200	0	0	NA	exonic	Akap11	synonymous SNV	"Akap11:NM_001346784:exon6:c.C4251T:p.S1417S,Akap11:NM_001164503:exon7:c.C4251T:p.S1417S"	14qD3	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.177419355	3	0.9998828	GGC	synonymous	NA	NA	NA	NA
PW3330T1	chr14	84447989	PW2017tail	colon	sgMlh1	84447989	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	125	0	0	NA	exonic	Pcdh17	nonsynonymous SNV	Pcdh17:NM_001013753:exon1:c.A1895T:p.H632L	14qD3	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.15483871	3	0.9994042	CAC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr14	103576245	PW2017tail	colon	sgMlh1	103576245	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	302	0	0	NA	exonic	Scel	nonsynonymous SNV	Scel:NM_022886:exon16:c.G953A:p.G318D	14qE2.3	chr14-3072210-123348696	2	1	1	0.62	2	NON-ABERRANT	1	0.125806452	3	1.18E-09	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr15	28384413	PW2017tail	colon	sgMlh1	28384413	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.061	150	0	0	NA	exonic	Dnah5	nonsynonymous SNV	Dnah5:NM_133365:exon55:c.C9302T:p.A3101V	15qB1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.196774194	3	0.9946099	GCC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr15	37981523	PW2017tail	colon	sgMlh1	37981524	TC	-	Deletion	Strelka2;Vardict	2	0.1724	203	0	0	NA	exonic	Ubr5	frameshift deletion	"Ubr5:NM_001081359:exon49:c.7027_7028del:p.E2343Tfs*18,Ubr5:NM_001112721:exon49:c.7009_7010del:p.E2337Tfs*18"	15qB3.1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.556129032	NA	NA	TTC	frameshift	TC	14	TCTCTCTCTCTCTC	-2
PW3330T1	chr15	55338506	PW2017tail	colon	sgMlh1	55338506	C	T	SNV	Mutect2;Vardict	2	0.05	93	0	0	NA	exonic	Col14a1	synonymous SNV	"Col14a1:NM_001368422:exon3:c.C189T:p.L63L,Col14a1:NM_181277:exon3:c.C189T:p.L63L"	15qD1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.161290323	3	0.9949285	TCG	synonymous	NA	NA	NA	NA
PW3330T1	chr15	96350113	PW2017tail	colon	sgMlh1	96350113	A	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	172	0	0	NA	exonic	Arid2	nonsynonymous SNV	Arid2:NM_175251:exon4:c.A405T:p.Q135H	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.312903226	2	0.9961323	AAC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr15	98543573	PW2017tail	colon	sgMlh1	98543573	G	-	Deletion	Strelka2;Vardict	2	0.065	123	0	0	NA	exonic	Ccnt1	frameshift deletion	Ccnt1:NM_009833:exon9:c.1813delC:p.L605Ffs*3	15qF1	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3330T1	chr15	102358560	PW2017tail	colon	sgMlh1	102358560	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.222	57	0	0	NA	exonic	Sp7	synonymous SNV	"Sp7:NM_001348205:exon2:c.G810A:p.K270K,Sp7:NM_130458:exon2:c.G864A:p.K288K"	15qF3	chr15-3280572-103525164	2	1	1	0.62	2	NON-ABERRANT	1	0.716129032	1	0.836605	GCT	synonymous	NA	NA	NA	NA
PW3330T1	chr16	16318792	PW2017tail	colon	sgMlh1	16318792	G	-	Deletion	Strelka2;Vardict	2	0.2	55	0	0	NA	exonic	Dnm1l	frameshift deletion	"Dnm1l:NM_001360007:exon16:c.1703delC:p.P568Lfs*10,Dnm1l:NM_001360008:exon16:c.1685delC:p.P562Lfs*10,Dnm1l:NM_001360009:exon16:c.1703delC:p.P568Lfs*33"	16qA2	chr16-3948854-97560961	2	2	0	0.62	2	NON-ABERRANT	1	0.64516129	NA	NA	AGG	frameshift	AGC	15	CAGCAGAAGCAGCAG	-1
PW3330T1	chr17	5975805	PW2017tail	colon	sgMlh1	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.453	196	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.730645161	1	0.9999762	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW3330T1	chr17	20029855	PW2017tail	colon	sgMlh1	20029855	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	475	0	0	NA	exonic	Vmn2r104	nonsynonymous SNV	Vmn2r104:NM_001104566:exon6:c.C2153T:p.A718V	17qA3.2	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	3	1	TGC	nonsynonymous	CCAT	8	CCATCCAT	NA
PW3330T1	chr17	20624370	PW2017tail	colon	sgMlh1	20624370	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	242	0	0	NA	exonic	Fpr-rs3	nonsynonymous SNV	Fpr-rs3:NM_008040:exon1:c.G508A:p.A170T	17qA3.2	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	3	0.9999968	GCA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr17	26117226	PW2017tail	colon	sgMlh1	26117226	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.167	80	0	0	NA	exonic	Pgap6	synonymous SNV	Pgap6:NM_021793:exon3:c.G501A:p.K167K	17qA3.3	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.538709677	2	0.9962997	AGG	synonymous	AGGTGA	12	AGGTGAAGGTGA	NA
PW3330T1	chr17	32537164	PW2017tail	colon	sgMlh1	32537164	A	-	Deletion	Strelka2;Vardict	2	0.106	151	0	0	NA	exonic	Cyp4f16	frameshift deletion	"Cyp4f16:NM_001356303:exon2:c.166delA:p.N58Tfs*8,Cyp4f16:NM_024442:exon2:c.166delA:p.N58Tfs*8"	17qB1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.341935484	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3330T1	chr17	35672040	PW2017tail	colon	sgMlh1	35672040	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.095	50	0	0	NA	exonic	Gtf2h4	synonymous SNV	Gtf2h4:NM_010364:exon3:c.G198A:p.P66P	17qB1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.306451613	2	0.7599485	GCG	synonymous	NA	NA	NA	NA
PW3330T1	chr17	35855167	PW2017tail	colon	sgMlh1	35855167	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	142	0	0	NA	exonic	Mdc1	nonsynonymous SNV	Mdc1:NM_001010833:exon15:c.G4916A:p.C1639Y	17qB1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.122580645	3	0.9999835	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr17	35855180	PW2017tail	colon	sgMlh1	35855180	T	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	129	0	0	NA	exonic	Mdc1	synonymous SNV	Mdc1:NM_001010833:exon15:c.T4929A:p.T1643T	17qB1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	3	0.9998866	CTT	synonymous	NA	NA	NA	NA
PW3330T1	chr17	46261535	PW2017tail	colon	sgMlh1	46261535	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.065	84	0	0	NA	exonic	Tjap1	synonymous SNV	"Tjap1:NM_001252475:exon5:c.A174C:p.S58S,Tjap1:NM_001252473:exon6:c.A174C:p.S58S,Tjap1:NM_001252474:exon6:c.A174C:p.S58S,Tjap1:NM_028751:exon7:c.A174C:p.S58S"	17qC	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	3	0.9220353	CTG	synonymous	NA	NA	NA	NA
PW3330T1	chr17	64752467	PW2017tail	colon	sgMlh1	64752467	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	175	0	0	NA	exonic	Man2a1	synonymous SNV	Man2a1:NM_008549:exon22:c.C3348A:p.S1116S	17qE1.1	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.751612903	1	0.9999903	CCT	synonymous	NA	NA	NA	NA
PW3330T1	chr17	88636579	PW2017tail	colon	sgMlh1	88636579	A	-	Deletion	Mutect2;Vardict	2	0.06	142	0	0	NA	exonic	Ston1	frameshift deletion	Ston1:NM_029858:exon2:c.1412delA:p.K473Rfs*13	17qE4	chr17-3545491-89046578	2	1	1	0.62	2	NON-ABERRANT	1	0.193548387	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr18	34312295	PW2017tail	colon	sgMlh1	34312314	CATCCCTTCACGTTAGGAAA	-	Deletion	Mutect2;Vardict	2	0.372	161	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2066_2085del:p.S690Efs*5,Apc:NM_007462:exon16:c.2243_2262del:p.S749Efs*5,Apc:NM_001360980:exon17:c.2297_2316del:p.S767Efs*5"	18qB1	chr18-3433966-89206553	2	1	1	0.62	2	NON-ABERRANT	1	1	NA	NA	CCA	frameshift	NA	NA	NA	-20
PW3330T1	chr18	34312304	PW2017tail	colon	sgMlh1	34312304	-	C	Insertion	Mutect2;Vardict	2	0.481	84	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-3433966-89206553	2	1	1	0.62	2	NON-ABERRANT	1	0.775806452	NA	NA	CAC	frameshift	NA	NA	NA	1
PW3330T1	chr18	37309117	PW2017tail	colon	sgMlh1	37309117	G	T	SNV	Mutect2;Vardict	2	0.025	216	0	0	NA	exonic	Pcdhb4	nonsynonymous SNV	Pcdhb4:NM_053129:exon1:c.G1479T:p.Q493H	18qB3	chr18-3433966-89206553	2	1	1	0.62	2	NON-ABERRANT	1	0.080645161	3	1.36E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr18	60389975	PW2017tail	colon	sgMlh1	60389975	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.046	169	0	0	NA	exonic	Iigp1	nonsynonymous SNV	"Iigp1:NM_001146275:exon3:c.A164G:p.N55S,Iigp1:NM_021792:exon3:c.A164G:p.N55S"	18qD3	chr18-3433966-89206553	2	1	1	0.62	2	NON-ABERRANT	1	0.148387097	3	0.9999732	AAC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr18	67638266	PW2017tail	colon	sgMlh1	67638266	T	-	Deletion	Strelka2;Vardict	2	0.1053	76	0	0	NA	exonic	Cep76	frameshift deletion	Cep76:NM_001081073:exon3:c.295delA:p.T99Lfs*74	18qE1	chr18-3433966-89206553	2	1	1	0.62	2	NON-ABERRANT	1	0.339677419	NA	NA	CTT	frameshift	"ATAC, T"	"8, 8"	"ATACATAC, TTTTTTTT"	-1
PW3330T1	chr19	13619325	PW2017tail	colon	sgMlh1	13619325	C	A	SNV	Mutect2;Vardict	2	0.033	474	0	0	NA	exonic	Olfr1487	synonymous SNV	Olfr1487:NM_146636:exon1:c.C162A:p.L54L	19qA	chr19-3902564-59274607	2	1	1	0.62	2	NON-ABERRANT	1	0.106451613	3	1	TCC	synonymous	NA	NA	NA	NA
PW3330T1	chr19	37608972	PW2017tail	colon	sgMlh1	37608972	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.081	115	0	0	NA	exonic	Exoc6	frameshift deletion	Exoc6:NM_175353:exon18:c.1820delA:p.I609Lfs*24	19qC2	chr19-3902564-59274607	2	1	1	0.62	2	NON-ABERRANT	1	0.261290323	NA	NA	CAA	frameshift	TCAA	8	TCAATCAA	-1
PW3330T1	chr19	55206226	PW2017tail	colon	sgMlh1	55206226	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	150	0	0	NA	exonic	Gucy2g	frameshift deletion	"Gucy2g:NM_001371012:exon5:c.835delC:p.L279Cfs*3,Gucy2g:NM_001081076:exon17:c.2758delC:p.L920Cfs*3"	19qD2	chr19-3902564-59274607	2	1	1	0.62	2	NON-ABERRANT	1	0.325806452	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr19	61227332	PW2017tail	colon	sgMlh1	61227332	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.147	65	0	0	NA	exonic	Csf2ra	frameshift deletion	Csf2ra:NM_009970:exon2:c.34delC:p.L12Wfs*32	19qD3	NA	NA	NA	NA	0.62	2	NON-ABERRANT	NA	NA	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr2	4936049	PW2017tail	colon	sgMlh1	4936049	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.047	166	0	0	NA	exonic	Phyh	synonymous SNV	Phyh:NM_010726:exon7:c.C759T:p.G253G	2qA1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.151612903	3	0.9999564	GCG	synonymous	NA	NA	NA	NA
PW3330T1	chr2	25243987	PW2017tail	colon	sgMlh1	25243987	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	58	0	0	NA	exonic	Rnf208	frameshift deletion	Rnf208:NM_176834:exon1:c.692delG:p.G233Vfs*59	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.4	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr2	26395083	PW2017tail	colon	sgMlh1	26395083	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.099	87	0	0	NA	exonic	Pmpca	nonsynonymous SNV	Pmpca:NM_173180:exon12:c.C1319T:p.S440F	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.319354839	2	0.9497013	TCC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	27463570	PW2017tail	colon	sgMlh1	27463570	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.098	109	0	0	NA	exonic	Brd3	frameshift deletion	"Brd3:NM_001113573:exon3:c.233delA:p.N78Tfs*11,Brd3:NM_001113574:exon3:c.233delA:p.N78Tfs*11,Brd3:NM_023336:exon3:c.233delA:p.N78Tfs*11"	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.316129032	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3330T1	chr2	28084838	PW2017tail	colon	sgMlh1	28084838	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.347	95	0	0	NA	exonic	Fcnb	nonsynonymous SNV	Fcnb:NM_010190:exon1:c.C20T:p.A7V	2qA3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	1	1	3.86E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	59815424	PW2017tail	colon	sgMlh1	59815424	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.034	159	0	0	NA	exonic	Tanc1	nonsynonymous SNV	"Tanc1:NM_001290659:exon16:c.T2819C:p.V940A,Tanc1:NM_198294:exon17:c.T2840C:p.V947A"	2qC1.1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	3	0.9999986	GTT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	64923567	PW2017tail	colon	sgMlh1	64923567	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.168	177	0	0	NA	exonic	Grb14	synonymous SNV	Grb14:NM_016719:exon9:c.C1068T:p.S356S	2qC1.3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.541935484	2	0.999969	CGC	synonymous	NA	NA	NA	NA
PW3330T1	chr2	69482842	PW2017tail	colon	sgMlh1	69482842	T	C	SNV	Mutect2;Vardict	2	0.04	146	0	0	NA	exonic	Lrp2	nonsynonymous SNV	Lrp2:NM_001081088:exon40:c.A7414G:p.I2472V	2qC2	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.129032258	3	0.999979	ATG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	69656911	PW2017tail	colon	sgMlh1	69656911	T	-	Deletion	Mutect2;Vardict	2	0.084	319	0	0	NA	exonic	Bbs5	frameshift deletion	"Bbs5:NM_001362706:exon6:c.132delT:p.F46Lfs*4,Bbs5:NM_028284:exon7:c.537delT:p.F181Lfs*4"	2qC2	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.270967742	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3330T1	chr2	82982672	PW2017tail	colon	sgMlh1	82982672	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	165	0	0	NA	exonic	Fsip2	nonsynonymous SNV	Fsip2:NM_001370266:exon16:c.A9328C:p.I3110L	2qD	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.122580645	3	0.9999971	AAT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	85196056	PW2017tail	colon	sgMlh1	85196056	C	-	Deletion	Strelka2;Vardict	2	0.1163	43	0	0	NA	exonic	Lrrc55	frameshift deletion	Lrrc55:NM_001033346:exon2:c.584delG:p.G195Vfs*13	2qD	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.37516129	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3330T1	chr2	86146326	PW2017tail	colon	sgMlh1	86146326	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.16	390	0	0	NA	exonic	Olfr1040	nonsynonymous SNV	Olfr1040:NM_207561:exon1:c.T407C:p.M136T	2qD	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.516129032	2	1.00E-09	CAT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	88224462	PW2017tail	colon	sgMlh1	88224462	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.346	417	0	0	NA	exonic	Olfr1170	nonsynonymous SNV	Olfr1170:NM_146532:exon1:c.C569T:p.S190F	2qD	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	1	1	1	AGA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	89249235	PW2017tail	colon	sgMlh1	89249235	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.034	318	0	0	NA	exonic	Olfr1228	nonsynonymous SNV	Olfr1228:NM_146971:exon1:c.G458A:p.G153D	2qE1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	3	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	89880990	PW2017tail	colon	sgMlh1	89880990	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	233	0	0	NA	exonic	Olfr1257	nonsynonymous SNV	Olfr1257:NM_146982:exon1:c.T163C:p.S55P	2qE1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.261290323	2	0.6787122	GTC	nonsynonymous	C	5	CCCCC	NA
PW3330T1	chr2	90700575	PW2017tail	colon	sgMlh1	90700575	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	89	0	0	NA	exonic	Nup160	nonsynonymous SNV	Nup160:NM_021512:exon14:c.C1576T:p.L526F	2qE1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.167741935	3	0.9913266	TCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	90708128	PW2017tail	colon	sgMlh1	90708136	CATAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.111	169	0	0	NA	exonic	Nup160	frameshift deletion	Nup160:NM_021512:exon20:c.2274_2277del:p.E759Lfs*10	2qE1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.358064516	NA	NA	TCA	frameshift	T	7	TTTTTTT	-9
PW3330T1	chr2	105378879	PW2017tail	colon	sgMlh1	105378879	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	157	0	0	NA	exonic	Them7	synonymous SNV	"Them7:NM_001159638:exon3:c.A471G:p.A157A,Them7:NM_028747:exon4:c.A543G:p.A181A"	2qE3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	3	0.9997644	CAC	synonymous	NA	NA	NA	NA
PW3330T1	chr2	111409289	PW2017tail	colon	sgMlh1	111409289	A	-	Deletion	Mutect2;Vardict	2	0.042	230	0	0	NA	exonic	Olfr1285	frameshift deletion	Olfr1285:NM_001370925:exon1:c.786delA:p.N264Tfs*1	2qE3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr2	122798189	PW2017tail	colon	sgMlh1	122798189	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.108	65	0	0	NA	exonic	Sqor	frameshift deletion	"Sqor:NM_001162503:exon5:c.611delC:p.Q206Rfs*27,Sqor:NM_021507:exon5:c.611delC:p.Q206Rfs*27"	2qE5	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.348387097	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr2	132252988	PW2017tail	colon	sgMlh1	132252988	C	A	SNV	Mutect2;MuSe;Vardict	3	0.102	82	0	0	NA	exonic	Pcna	stopgain	Pcna:NM_011045:exon1:c.G49T:p.E17X	2qF2	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.329032258	2	0.9609442	TCC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	154360606	PW2017tail	colon	sgMlh1	154360606	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.097	103	0	0	NA	exonic	Cdk5rap1	nonsynonymous SNV	Cdk5rap1:NM_025876:exon6:c.G703A:p.A235T	2qH1	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.312903226	2	0.959621	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr2	164952619	PW2017tail	colon	sgMlh1	164952619	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.162	38	0	0	NA	exonic	Mmp9	synonymous SNV	Mmp9:NM_013599:exon9:c.C1530A:p.G510G	2qH3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.522580645	2	0.9729522	GCC	synonymous	NA	NA	NA	NA
PW3330T1	chr2	168189326	PW2017tail	colon	sgMlh1	168189326	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.192	240	0	0	NA	exonic	Adnp	frameshift deletion	"Adnp:NM_009628:exon2:c.64delA:p.I22Yfs*13,Adnp:NM_001310086:exon3:c.64delA:p.I22Yfs*13"	2qH3	chr2-3336174-181006567	2	1	1	0.62	2	NON-ABERRANT	1	0.619354839	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chr3	27122444	PW2017tail	colon	sgMlh1	27122446	CTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.075	241	0	0	NA	exonic	Ect2	nonframeshift deletion	"Ect2:NM_001177625:exon18:c.1844_1846del:p.E615del,Ect2:NM_001177626:exon18:c.1844_1846del:p.E615del,Ect2:NM_007900:exon19:c.1937_1939del:p.E646del"	3qA3	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.241935484	NA	NA	GCT	inframe	NA	NA	NA	-3
PW3330T1	chr3	59336300	PW2017tail	colon	sgMlh1	59336300	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	107	0	0	NA	exonic	Igsf10	nonsynonymous SNV	Igsf10:NM_001162884:exon4:c.G612T:p.M204I	3qD	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.222580645	3	0.09561792	CCA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr3	64105328	PW2017tail	colon	sgMlh1	64105328	G	T	SNV	Mutect2;Vardict	2	0.038	210	0	0	NA	exonic	Vmn2r1	nonsynonymous SNV	"Vmn2r1:NM_019918:exon6:c.G2609T:p.R870M,Vmn2r1:NM_001384924:exon7:c.G2384T:p.R795M"	3qE1	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.122580645	3	0.9999999	AGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr3	87995562	PW2017tail	colon	sgMlh1	87995562	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.092	57	0	0	NA	exonic	Bcan	nonsynonymous SNV	"Bcan:NM_001109758:exon6:c.G908A:p.G303D,Bcan:NM_007529:exon6:c.G908A:p.G303D"	3qF1	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.296774194	2	0.7410224	GCC	nonsynonymous	CAGC	15	CAGCCAGCCAGCCAG	NA
PW3330T1	chr3	135248627	PW2017tail	colon	sgMlh1	135248627	C	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.103	77	0	0	NA	exonic	Cenpe	nonsynonymous SNV	Cenpe:NM_173762:exon34:c.C5244G:p.D1748E	3qG3	chr3-15331830-159911278	2	1	1	0.62	2	NON-ABERRANT	1	0.332258065	2	0.9579777	ACC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	21832299	PW2017tail	colon	sgMlh1	21832299	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.092	85	0	0	NA	exonic	Usp45	nonsynonymous SNV	"Usp45:NM_001290425:exon16:c.G2149A:p.G717R,Usp45:NM_152825:exon17:c.G2293A:p.G765R"	4qA3	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.296774194	2	0.853061	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	43835735	PW2017tail	colon	sgMlh1	43835735	A	-	Deletion	Mutect2;Vardict	2	0.034	240	0	0	NA	exonic	Olfr157	frameshift deletion	Olfr157:NM_019475:exon1:c.754delT:p.Y252Mfs*35	4qB1	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T1	chr4	43855181	PW2017tail	colon	sgMlh1	43855181	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	131	0	0	NA	exonic	Olfr155	nonsynonymous SNV	Olfr155:NM_019473:exon1:c.A871G:p.M291V	4qB1	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.293548387	2	0.9357365	CAT	nonsynonymous	C	5	CCCCC	NA
PW3330T1	chr4	85385911	PW2017tail	colon	sgMlh1	85385911	A	-	Deletion	Mutect2;Vardict	2	0.042	160	0	0	NA	exonic	Sh3gl2	frameshift deletion	Sh3gl2:NM_019535:exon8:c.850delA:p.K284Nfs*60	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.135483871	NA	NA	CAA	frameshift	NA	NA	NA	-1
PW3330T1	chr4	86385598	PW2017tail	colon	sgMlh1	86385598	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	85	0	0	NA	exonic	Adamtsl1	nonsynonymous SNV	"Adamtsl1:NM_029967:exon21:c.G4018T:p.G1340C,Adamtsl1:NM_001368621:exon22:c.G4069T:p.G1357C"	4qC4	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.251612903	3	0.6099072	AGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	109027529	PW2017tail	colon	sgMlh1	109027529	G	-	Deletion	Mutect2;Vardict	2	0.062	172	0	0	NA	exonic	Nrd1	frameshift deletion	"Nrd1:NM_001346554:exon6:c.1067delG:p.G357Efs*20,Nrd1:NM_146150:exon6:c.1067delG:p.G357Efs*20,Nrd1:NM_001347169:exon8:c.1271delG:p.G425Efs*20"	4qC7	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.2	NA	NA	TGG	frameshift	T	7	TTTTTTT	-1
PW3330T1	chr4	113819190	PW2017tail	colon	sgMlh1	113819190	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	170	0	0	NA	exonic	Skint5	synonymous SNV	"Skint5:NM_001167876:exon19:c.T1656C:p.S552S,Skint5:NM_001167878:exon19:c.T1656C:p.S552S"	4qD1	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	3	0.9998782	TAC	synonymous	NA	NA	NA	NA
PW3330T1	chr4	123506460	PW2017tail	colon	sgMlh1	123506460	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.159	141	0	0	NA	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199136:exon17:c.A2041C:p.S681R,Macf1:NM_001199137:exon17:c.A2041C:p.S681R"	4qD2.2	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.512903226	2	0.999983	CTC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	129630398	PW2017tail	colon	sgMlh1	129630398	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	181	0	0	NA	exonic	Txlna	synonymous SNV	"Txlna:NM_001005506:exon8:c.C1165T:p.L389L,Txlna:NM_001199695:exon9:c.C1165T:p.L389L"	4qD2.2	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.125806452	3	0.9999988	AGG	synonymous	NA	NA	NA	NA
PW3330T1	chr4	136633142	PW2017tail	colon	sgMlh1	136633142	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.118	65	0	0	NA	exonic	Lactbl1	nonsynonymous SNV	Lactbl1:NM_001243262:exon6:c.C631T:p.R211W	4qD3	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.380645161	2	0.9876844	CCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	141017893	PW2017tail	colon	sgMlh1	141017893	C	T	SNV	Mutect2;Vardict	2	0.099	44	0	0	NA	exonic	Crocc	synonymous SNV	"Crocc:NM_001145958:exon35:c.G5412A:p.E1804E,Crocc:NM_172122:exon36:c.G5904A:p.E1968E"	4qD3	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.319354839	2	0.7847247	GCT	synonymous	NA	NA	NA	NA
PW3330T1	chr4	147887491	PW2017tail	colon	sgMlh1	147887491	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	134	0	0	NA	exonic	Mfn2	nonsynonymous SNV	"Mfn2:NM_001285922:exon7:c.G632A:p.S211N,Mfn2:NM_001285923:exon7:c.G632A:p.S211N,Mfn2:NM_001355590:exon7:c.G632A:p.S211N,Mfn2:NM_001355591:exon7:c.G632A:p.S211N,Mfn2:NM_133201:exon7:c.G632A:p.S211N,Mfn2:NM_001285920:exon8:c.G632A:p.S211N,Mfn2:NM_001285921:exon8:c.G632A:p.S211N"	4qE2	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.138709677	3	0.9998963	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr4	151143889	PW2017tail	colon	sgMlh1	151143889	G	-	Deletion	Strelka2;Vardict	2	0.1132	53	0	0	NA	exonic	Camta1	frameshift deletion	Camta1:NM_001081557:exon9:c.2485delC:p.Q829Nfs*6	4qE2	chr4-5799947-156200568	2	1	1	0.62	2	NON-ABERRANT	1	0.36516129	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr5	17717001	PW2017tail	colon	sgMlh1	17717001	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	143	0	0	NA	exonic	Sema3c	nonsynonymous SNV	Sema3c:NM_013657:exon15:c.T1576G:p.L526V	5qA3	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.193548387	3	0.9948187	CTT	nonsynonymous	CTG	8	CTGCTGCT	NA
PW3330T1	chr5	35666180	PW2017tail	colon	sgMlh1	35666180	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.134	45	0	0	NA	exonic	Htra3	nonsynonymous SNV	"Htra3:NM_001042615:exon4:c.C791T:p.A264V,Htra3:NM_030127:exon4:c.C791T:p.A264V"	5qB3	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.432258065	2	0.9846281	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr5	65348836	PW2017tail	colon	sgMlh1	65348836	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.054	151	0	0	NA	exonic	Klb	nonsynonymous SNV	Klb:NM_031180:exon1:c.A425G:p.D142G	5qC3.1	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.174193548	3	0.9992608	GAT	nonsynonymous	T	5	TTTTT	NA
PW3330T1	chr5	92348753	PW2017tail	colon	sgMlh1	92348756	CCTT	-	Deletion	Mutect2;Vardict	2	0.024	193	0	0	NA	exonic	Cxcl10	nonframeshift deletion	Cxcl10:NM_021274:exon1:c.59_61del:p.Q20_G21delinsR	5qE2	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.077419355	NA	NA	ACC	inframe	NA	NA	NA	-4
PW3330T1	chr5	110295302	PW2017tail	colon	sgMlh1	110295302	T	-	Deletion	Mutect2;Vardict	2	0.05	218	0	0	NA	exonic	Pole	frameshift deletion	Pole:NM_011132:exon11:c.1095delT:p.F367Lfs*20	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.161290323	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chr5	120655081	PW2017tail	colon	sgMlh1	120655081	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.053	129	0	0	NA	exonic	Rasal1	nonsynonymous SNV	"Rasal1:NM_001359144:exon5:c.A250G:p.I84V,Rasal1:NM_013832:exon5:c.A250G:p.I84V"	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.170967742	3	0.9984293	CAT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr5	120808125	PW2017tail	colon	sgMlh1	120808125	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.089	142	0	0	NA	exonic	Oas1c	nonsynonymous SNV	Oas1c:NM_033541:exon3:c.A307T:p.I103F	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.287096774	2	0.9175484	ATT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr5	122787860	PW2017tail	colon	sgMlh1	122787860	G	A	SNV	Mutect2;Vardict	2	0.111	59	0	0	NA	exonic	Anapc5	stopgain	"Anapc5:NM_001042491:exon17:c.C2131T:p.Q711X,Anapc5:NM_001289517:exon17:c.C2107T:p.Q703X,Anapc5:NM_001289518:exon17:c.C2146T:p.Q716X,Anapc5:NM_001289520:exon17:c.C2146T:p.Q716X,Anapc5:NM_021505:exon17:c.C2170T:p.Q724X"	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.358064516	2	0.9600439	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr5	124265445	PW2017tail	colon	sgMlh1	124265445	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.382	126	0	0	NA	exonic	Mphosph9	nonsynonymous SNV	"Mphosph9:NM_001081323:exon16:c.G2429T:p.S810I,Mphosph9:NM_001277867:exon17:c.G2519T:p.S840I"	5qF	chr5-5457389-151648188	2	1	1	0.62	2	NON-ABERRANT	1	0.616129032	2	0.09744019	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	13192594	PW2017tail	colon	sgMlh1	13192594	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.03	203	0	0	NA	exonic	Vwde	nonsynonymous SNV	"Vwde:NM_001013757:exon9:c.C1309A:p.P437T,Vwde:NM_001368871:exon9:c.C1309A:p.P437T"	6qA1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.096774194	3	9.46E-09	GGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	15799641	PW2017tail	colon	sgMlh1	15799641	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.112	302	0	0	NA	exonic	Mdfic	nonsynonymous SNV	Mdfic:NM_175088:exon5:c.G520A:p.A174T	6qA1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.361290323	2	1.08E-08	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	17492240	PW2017tail	colon	sgMlh1	17492240	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	116	0	0	NA	exonic	Met	nonsynonymous SNV	Met:NM_008591:exon3:c.G1000A:p.A334T	6qA2	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.151612903	3	0.9992027	AGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	21726069	PW2017tail	colon	sgMlh1	21726069	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.055	156	0	0	NA	exonic	Kcnd2	synonymous SNV	Kcnd2:NM_019697:exon5:c.C1560T:p.S520S	6qA3.1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.177419355	3	0.9992125	CCT	synonymous	CT	9	CTCTCTCTC	NA
PW3330T1	chr6	42790761	PW2017tail	colon	sgMlh1	42790761	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.023	228	0	0	NA	exonic	Olfr452	nonsynonymous SNV	Olfr452:NM_001011869:exon1:c.T721G:p.C241G	6qB2.1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.074193548	3	1.05E-09	CTG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	48449165	PW2017tail	colon	sgMlh1	48449165	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.076	129	0	0	NA	exonic	Sspo	frameshift deletion	Sspo:NM_173428:exon3:c.293delG:p.G100Efs*25	6qB2.3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.24516129	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T1	chr6	48467840	PW2017tail	colon	sgMlh1	48467840	C	-	Deletion	Mutect2;Vardict	2	0.045	115	0	0	NA	exonic	Sspo	frameshift deletion	Sspo:NM_173428:exon43:c.6680delC:p.P2228Rfs*53	6qB2.3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	NA	NA	TCC	frameshift	NA	NA	NA	-1
PW3330T1	chr6	83404136	PW2017tail	colon	sgMlh1	83404136	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.124	75	0	0	NA	exonic	Tet3	frameshift deletion	"Tet3:NM_183138:exon3:c.644delA:p.N215Tfs*281,Tet3:NM_001347313:exon4:c.1049delA:p.N350Tfs*281"	6qC3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.4	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3330T1	chr6	118405329	PW2017tail	colon	sgMlh1	118405329	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	166	0	0	NA	exonic	Bms1	nonsynonymous SNV	Bms1:NM_194339:exon10:c.C1247T:p.P416L	6qF1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.251612903	3	0.6229575	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	123806404	PW2017tail	colon	sgMlh1	123806404	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	226	0	0	NA	exonic	Vmn2r24	nonsynonymous SNV	Vmn2r24:NM_001104639:exon5:c.C1562T:p.A521V	6qF2	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.14516129	3	0.9999994	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	125189813	PW2017tail	colon	sgMlh1	125189813	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.361	82	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon2:c.A77G:p.Y26C	6qF2	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	1	1	5.19E-08	GTA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr6	126966914	PW2017tail	colon	sgMlh1	126966914	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	147	0	0	NA	exonic	D6Wsu163e	synonymous SNV	D6Wsu163e:NM_138594:exon11:c.G1272A:p.S424S	6qF3	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.170967742	3	0.9993256	CGG	synonymous	NA	NA	NA	NA
PW3330T1	chr6	136400936	PW2017tail	colon	sgMlh1	136400936	C	-	Deletion	Mutect2;Vardict	2	0.065	178	0	0	NA	exonic	E330021D16Rik	frameshift deletion	E330021D16Rik:NM_001201390:exon2:c.895delG:p.A299Hfs*17	6qG1	chr6-3483595-146858806	2	1	1	0.62	2	NON-ABERRANT	1	0.209677419	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr6	146868245	PW2017tail	colon	sgMlh1	146868245	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.153	54	0	0	NA	exonic	Smco2	frameshift deletion	Smco2:NM_027059:exon9:c.826delC:p.C278Afs*8	6qG3	NA	NA	NA	NA	0.62	2	NON-ABERRANT	NA	NA	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr7	6709581	PW2017tail	colon	sgMlh1	6709581	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	182	0	0	NA	exonic	Peg3	stopgain	Peg3:NM_008817:exon9:c.C2641T:p.R881X	7qA1	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.283870968	2	0.9458566	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	7554102	PW2017tail	colon	sgMlh1	7554102	G	C	SNV	Mutect2;Vardict	2	0.046	312	0	0	NA	exonic	Vmn2r33	nonsynonymous SNV	Vmn2r33:NM_001105065:exon5:c.C1598G:p.A533G	7qA1	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.148387097	3	6.03E-09	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	8471838	PW2017tail	colon	sgMlh1	8471838	A	G	SNV	Mutect2;MuSe;Vardict	3	0.135	502	0	0	NA	exonic	Vmn2r45	synonymous SNV	Vmn2r45:NM_001105075:exon6:c.T2190C:p.T730T	7qA1	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.435483871	2	1	GAG	synonymous	NA	NA	NA	NA
PW3330T1	chr7	35429158	PW2017tail	colon	sgMlh1	35429158	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	72	0	0	NA	exonic	Cep89	stopgain	Cep89:NM_028120:exon16:c.C1735T:p.R579X	7qB2	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.248387097	3	9.16E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	45800961	PW2017tail	colon	sgMlh1	45800961	C	-	Deletion	Strelka2;Vardict	2	0.1875	16	0	0	NA	exonic	Lmtk3	frameshift deletion	"Lmtk3:NM_001290990:exon14:c.4170delC:p.L1393Cfs*60,Lmtk3:NM_001005511:exon15:c.4170delC:p.L1393Cfs*60"	7qB3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.60483871	NA	NA	GCC	frameshift	C	8	CCCCCCCC	-1
PW3330T1	chr7	46265732	PW2017tail	colon	sgMlh1	46265732	C	-	Deletion	Strelka2;Vardict	2	0.0464	151	0	0	NA	exonic	Otog	frameshift deletion	Otog:NM_013624:exon21:c.2520delC:p.P842Lfs*17	7qB3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.149677419	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3330T1	chr7	102411278	PW2017tail	colon	sgMlh1	102411278	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.052	153	0	0	NA	exonic	Stim1	nonsynonymous SNV	"Stim1:NM_001374058:exon5:c.G527T:p.G176V,Stim1:NM_001374060:exon5:c.G527T:p.G176V,Stim1:NM_009287:exon5:c.G527T:p.G176V"	7qE3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.167741935	3	0.9996169	GGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	102494423	PW2017tail	colon	sgMlh1	102494423	G	T	SNV	Mutect2;Vardict	2	0.051	325	0	0	NA	exonic	Olfr545	nonsynonymous SNV	Olfr545:NM_146840:exon1:c.C351A:p.N117K	7qE3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.164516129	3	4.79E-08	TGT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	108880953	PW2017tail	colon	sgMlh1	108880953	C	T	SNV	Mutect2;MuSe;Vardict	3	0.049	399	0	0	NA	exonic	Olfr518	nonsynonymous SNV	Olfr518:NM_146306:exon1:c.G652A:p.A218T	7qE3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.158064516	3	1.25E-09	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	127752233	PW2017tail	colon	sgMlh1	127752233	G	-	Deletion	Strelka2;Vardict	2	0.1429	21	0	0	NA	exonic	Fbxl19	frameshift deletion	"Fbxl19:NM_001374793:exon7:c.884delG:p.G296Afs*86,Fbxl19:NM_172748:exon7:c.1013delG:p.G339Afs*86"	7qF3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.460967742	NA	NA	CGG	frameshift	NA	NA	NA	-1
PW3330T1	chr7	127879019	PW2017tail	colon	sgMlh1	127879019	C	A	SNV	Mutect2;Vardict	2	0.062	68	0	0	NA	exonic	Zfp646	nonsynonymous SNV	Zfp646:NM_172749:exon2:c.C367A:p.L123I	7qF3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.2	3	0.9207083	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr7	128244072	PW2017tail	colon	sgMlh1	128244072	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.128	52	0	0	NA	exonic	Armc5	nonsynonymous SNV	Armc5:NM_146205:exon6:c.G2036T:p.R679L	7qF3	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.412903226	2	0.9874845	CGC	nonsynonymous	GCCTCC	12	GCCTCCGCCTCC	NA
PW3330T1	chr7	142083314	PW2017tail	colon	sgMlh1	142083314	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	192	0	0	NA	exonic	Dusp8	nonsynonymous SNV	Dusp8:NM_008748:exon6:c.G775A:p.A259T	7qF5	chr7-4925998-143497059	2	1	1	0.62	2	NON-ABERRANT	1	0.329032258	2	0.9996717	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	27408403	PW2017tail	colon	sgMlh1	27408403	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.141	163	0	0	NA	exonic	Chrna6	nonsynonymous SNV	Chrna6:NM_021369:exon4:c.C286T:p.R96C	8qA2	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.45483871	2	9.93E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	40899044	PW2017tail	colon	sgMlh1	40899044	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.041	139	0	0	NA	exonic	Slc7a2	nonsynonymous SNV	"Slc7a2:NM_001044740:exon2:c.G92A:p.C31Y,Slc7a2:NM_007514:exon2:c.G92A:p.C31Y"	8qA4	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.132258065	3	0.9999553	TGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	45009895	PW2017tail	colon	sgMlh1	45009895	T	-	Deletion	Mutect2;Vardict	2	0.052	131	0	0	NA	exonic	Fat1	frameshift deletion	Fat1:NM_001081286:exon4:c.3748delT:p.Y1251Tfs*26	8qB1.1	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.167741935	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW3330T1	chr8	72458754	PW2017tail	colon	sgMlh1	72458754	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.084	172	0	0	NA	exonic	1700030K09Rik	synonymous SNV	1700030K09Rik:NM_028170:exon7:c.G1788A:p.L596L	8qB3.3	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.270967742	2	0.8032393	TGG	synonymous	NA	NA	NA	NA
PW3330T1	chr8	77597815	PW2017tail	colon	sgMlh1	77597815	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	196	0	0	NA	exonic	Tmem184c	nonsynonymous SNV	"Tmem184c:NM_145599:exon9:c.C1045T:p.R349C,Tmem184c:NM_001364445:exon10:c.C1165T:p.R389C"	8qC1	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.109677419	3	0.9999999	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	84533438	PW2017tail	colon	sgMlh1	84533438	C	-	Deletion	Mutect2;Vardict	2	0.032	328	0	0	NA	exonic	Cacna1a	frameshift deletion	"Cacna1a:NM_001252059:exon6:c.888delC:p.L298Sfs*8,Cacna1a:NM_001252060:exon7:c.1029delC:p.L345Sfs*9,Cacna1a:NM_001252061:exon7:c.1029delC:p.L345Sfs*9,Cacna1a:NM_007578:exon7:c.1029delC:p.L345Sfs*8"	8qC2	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr8	84845947	PW2017tail	colon	sgMlh1	84845947	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	123	0	0	NA	exonic	Calr	nonsynonymous SNV	Calr:NM_007591:exon3:c.C312G:p.D104E	8qC2	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.341935484	2	0.9972974	AGT	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	106264910	PW2017tail	colon	sgMlh1	106264910	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.132	55	0	0	NA	exonic	Smpd3	nonsynonymous SNV	Smpd3:NM_021491:exon3:c.G1010A:p.R337H	8qD3	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.425806452	2	0.993468	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr8	111915314	PW2017tail	colon	sgMlh1	111915314	G	A	SNV	Mutect2;Vardict	2	0.032	187	0	0	NA	exonic	Tmem231	nonsynonymous SNV	"Tmem231:NM_001033321:exon5:c.C607T:p.P203S,Tmem231:NM_001357348:exon6:c.C355T:p.P119S"	8qE1	chr8-3536768-129166929	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	3	0.9999999	GGA	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr9	38930965	PW2017tail	colon	sgMlh1	38930965	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	232	0	0	NA	exonic	Olfr930	nonsynonymous SNV	Olfr930:NM_146272:exon1:c.A793C:p.S265R	9qA5.1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.241935484	3	0.8626141	AAG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chr9	44436222	PW2017tail	colon	sgMlh1	44436222	T	-	Deletion	Strelka2;Vardict	2	0.1063	207	0	0	NA	exonic	Foxr1	frameshift deletion	Foxr1:NM_001033469:exon2:c.118delA:p.T40Pfs*17	9qA5.2	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.342903226	NA	NA	GTT	frameshift	GGTT	8	GGTTGGTT	-1
PW3330T1	chr9	53570206	PW2017tail	colon	sgMlh1	53570206	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.165	102	0	0	NA	exonic	Npat	synonymous SNV	Npat:NM_001081152:exon17:c.T3213C:p.N1071N	9qA5.3	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.532258065	2	0.9992159	ATA	synonymous	NA	NA	NA	NA
PW3330T1	chr9	65133713	PW2017tail	colon	sgMlh1	65133713	C	-	Deletion	Strelka2;Vardict	2	0.1026	39	0	0	NA	exonic	Igdcc4	frameshift deletion	"Igdcc4:NM_001290315:exon18:c.3025delC:p.S1011Vfs*79,Igdcc4:NM_020043:exon18:c.3022delC:p.S1010Vfs*79"	9qC	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.330967742	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3330T1	chr9	80136750	PW2017tail	colon	sgMlh1	80136750	A	-	Deletion	Strelka2;Vardict	2	0.2093	129	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.67516129	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
PW3330T1	chr9	88387260	PW2017tail	colon	sgMlh1	88387260	T	-	Deletion	Mutect2;Vardict	2	0.053	185	0	0	NA	exonic	Snx14	frameshift deletion	"Snx14:NM_172926:exon19:c.1919delA:p.N640Tfs*4,Snx14:NM_001359958:exon20:c.1946delA:p.N649Tfs*4"	9qE3.1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.170967742	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3330T1	chr9	98592594	PW2017tail	colon	sgMlh1	98592594	T	-	Deletion	Strelka2;Vardict	2	0.1497	147	0	0	NA	exonic	Mrps22	frameshift deletion	Mrps22:NM_025485:exon6:c.836delA:p.K279Rfs*47	9qE3.3	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.482903226	NA	NA	CTT	frameshift	T	8	TTTTTTTT	-1
PW3330T1	chr9	106673607	PW2017tail	colon	sgMlh1	106673607	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	88	0	0	NA	exonic	Tex264	synonymous SNV	"Tex264:NM_001081654:exon4:c.T390C:p.H130H,Tex264:NM_001286498:exon4:c.T390C:p.H130H,Tex264:NM_011573:exon4:c.T390C:p.H130H"	9qF1	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.358064516	2	0.992852	CAT	synonymous	NA	NA	NA	NA
PW3330T1	chr9	110483074	PW2017tail	colon	sgMlh1	110483074	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.032	223	0	0	NA	exonic	Kif9	synonymous SNV	"Kif9:NM_001163569:exon2:c.T9C:p.T3T,Kif9:NM_010628:exon2:c.T9C:p.T3T"	9qF2	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.103225806	3	4.22E-09	CTA	synonymous	NA	NA	NA	NA
PW3330T1	chr9	111258474	PW2017tail	colon	sgMlh1	111258586	GTGTCCCATCCTCACCGTGATCAGGGTGCCCTGGTTGCCTGCACAGGGTTTAGGAGGGGCTTGCAGCTTTCCATCTGAGTAACTTGCTCTAGTCAGAAAACAGAAGATTATTA	-	Deletion	Mutect2;Vardict	2	0.114	163	0	0	NA	exonic	Mlh1	frameshift deletion	Mlh1:NM_026810:exon5:c.381_453del:p.A128Wfs*7	9qF3	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.367741935	NA	NA	CGT	frameshift	C	5	CCCCC	-113
PW3330T1	chr9	124029443	PW2017tail	colon	sgMlh1	124029443	T	-	Deletion	Strelka2;Vardict	2	0.0955	220	0	0	NA	exonic	Ccr3	frameshift deletion	Ccr3:NM_009914:exon2:c.814delT:p.L273fs*0	9qF4	chr9-3342997-124108155	2	1	1	0.62	2	NON-ABERRANT	1	0.308064516	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chrX	37453976	PW2017tail	colon	sgMlh1	37453976	G	C	SNV	Mutect2;Vardict	2	0.018	439	0	0	NA	exonic	Rhox2c	nonsynonymous SNV	Rhox2c:NM_001099318:exon2:c.G128C:p.R43P	XqA3.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.058064516	NA	NA	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chrX	38631651	PW2017tail	colon	sgMlh1	38631651	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.105	227	0	0	NA	exonic	C1galt1c1	frameshift deletion	C1galt1c1:NM_021550:exon2:c.467delT:p.L156Cfs*1	XqA3.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.338709677	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3330T1	chrX	44366934	PW2017tail	colon	sgMlh1	44366934	C	T	SNV	Mutect2;Vardict	2	0.055	99	0	0	NA	exonic	Dcaf12l2	synonymous SNV	Dcaf12l2:NM_175539:exon1:c.G1077A:p.V359V	XqA4	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.177419355	NA	NA	GCA	synonymous	NA	NA	NA	NA
PW3330T1	chrX	56804406	PW2017tail	colon	sgMlh1	56804406	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.065	360	0	0	NA	exonic	Map7d3	frameshift deletion	Map7d3:NM_177293:exon12:c.1931delA:p.N644Tfs*9	XqA6	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.209677419	NA	NA	GTT	frameshift	NA	NA	NA	-1
PW3330T1	chrX	64270690	PW2017tail	colon	sgMlh1	64270690	-	T	Insertion	Strelka2;Vardict	2	0.0737	190	0	0	NA	exonic	Slitrk4	frameshift insertion	"Slitrk4:NM_001365112:exon2:c.2369dupA:p.N790Kfs*8,Slitrk4:NM_178740:exon3:c.2369dupA:p.N790Kfs*8,Slitrk4:NM_001365111:exon4:c.2369dupA:p.N790Kfs*8"	XqA7.1	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.237741935	NA	NA	TGT	frameshift	T	8	TTTTTTTT	1
PW3330T1	chrX	75394352	PW2017tail	colon	sgMlh1	75394352	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.053	286	0	0	NA	exonic	Fundc2	frameshift deletion	Fundc2:NM_026126:exon5:c.421delT:p.F142Lfs*33	XqA7.3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.170967742	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T1	chrX	96486280	PW2017tail	colon	sgMlh1	96486280	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	95	0	0	NA	exonic	Heph	nonsynonymous SNV	"Heph:NM_001159627:exon10:c.C1423A:p.R475S,Heph:NM_001159628:exon10:c.C1423A:p.R475S,Heph:NM_010417:exon10:c.C1423A:p.R475S,Heph:NM_181273:exon10:c.C1423A:p.R475S"	XqC3	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.196774194	NA	NA	CCG	nonsynonymous	NA	NA	NA	NA
PW3330T1	chrX	119928120	PW2017tail	colon	sgMlh1	119928120	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	104	0	0	NA	exonic	Pabpc5	nonsynonymous SNV	Pabpc5:NM_053114:exon2:c.G131A:p.R44H	XqE1	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.229032258	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T1	chrX	136246378	PW2017tail	colon	sgMlh1	136246378	-	A	Insertion	Strelka2;Vardict	2	0.1562	32	0	0	NA	exonic	Tceal9	frameshift insertion	Tceal9:NM_011712:exon3:c.14dupA:p.M7Nfs*9	XqF1	chrX-7946841-169987429	2	2	0	0.62	2	NON-ABERRANT	1	0.503870968	NA	NA	CCA	frameshift	A	5	AAAAA	1
PW3330T2	chr1	9747397	PW2017tail	colon	sgMlh1	9747397	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	183	0	0	NA	exonic	Vcpip1	nonsynonymous SNV	Vcpip1:NM_173443:exon1:c.G760A:p.A254T	1qA2	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.182758621	2	0.5514359	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	40767784	PW2017tail	colon	sgMlh1	40767784	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.063	101	0	0	NA	exonic	Slc9a2	frameshift deletion	Slc9a2:NM_001033289:exon12:c.2230delC:p.S746Afs*18	1qB	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.217241379	NA	NA	GCC	frameshift	C	5	CCCCC	-1
PW3330T2	chr1	58904023	PW2017tail	colon	sgMlh1	58904023	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	114	0	0	NA	exonic	Trak2	nonsynonymous SNV	Trak2:NM_172406:exon16:c.A2223C:p.K741N	1qC1.3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.351724138	2	0.9998937	GTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	68040331	PW2017tail	colon	sgMlh1	68040331	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.037	149	0	0	NA	exonic	Erbb4	nonsynonymous SNV	Erbb4:NM_010154:exon27:c.G3589A:p.A1197T	1qC3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.127586207	3	0.9809175	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	78694237	PW2017tail	colon	sgMlh1	78694237	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	146	0	0	NA	exonic	Acsl3	nonsynonymous SNV	"Acsl3:NM_001136222:exon5:c.G391A:p.V131I,Acsl3:NM_001033606:exon6:c.G847A:p.V283I,Acsl3:NM_028817:exon7:c.G847A:p.V283I"	1qC4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.131034483	3	0.9737291	AGT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	82289354	PW2017tail	colon	sgMlh1	82289354	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.069	130	0	0	NA	exonic	Irs1	synonymous SNV	Irs1:NM_010570:exon1:c.A1140G:p.S380S	1qC5	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.237931034	2	0.9752897	CTG	synonymous	NA	NA	NA	NA
PW3330T2	chr1	88242468	PW2017tail	colon	sgMlh1	88242468	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.019	442	0	0	NA	exonic	Mroh2a	nonsynonymous SNV	Mroh2a:NM_001281466:exon20:c.T2102C:p.V701A	1qD	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.065517241	3	1.01E-09	GTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	94008914	PW2017tail	colon	sgMlh1	94008914	T	G	SNV	Mutect2;Vardict	2	0.027	238	0	0	NA	exonic	Gal3st2c	nonsynonymous SNV	Gal3st2c:NM_001039219:exon8:c.T580G:p.F194V	1qD	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.093103448	3	0.9999663	GTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	104941270	PW2017tail	colon	sgMlh1	104941270	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	126	0	0	NA	exonic	Cdh20	nonsynonymous SNV	Cdh20:NM_011800:exon3:c.A485C:p.E162A	1qE2.1	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.279310345	2	0.9978701	GAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	119951067	PW2017tail	colon	sgMlh1	119951067	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.125	177	0	0	NA	exonic	Cfap221	frameshift insertion	Cfap221:NM_001115074:exon12:c.1200dupA:p.A401Sfs*43	1qE2.3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.431034483	NA	NA	GCT	frameshift	T	5	TTTTT	1
PW3330T2	chr1	134994010	PW2017tail	colon	sgMlh1	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.424	37	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	2	0.731034483	1	0.9899692	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	135167102	PW2017tail	colon	sgMlh1	135167102	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.042	159	0	0	NA	exonic	Gpr37l1	nonsynonymous SNV	Gpr37l1:NM_134438:exon1:c.C403A:p.L135I	1qE4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.144827586	3	0.9444672	AGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	136214379	PW2017tail	colon	sgMlh1	136214379	C	-	Deletion	Mutect2;Vardict	2	0.06	252	0	0	NA	exonic	Inava	frameshift deletion	Inava:NM_028872:exon10:c.1981delG:p.A661Pfs*42	1qE4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.206896552	NA	NA	GCC	frameshift	NA	NA	NA	-1
PW3330T2	chr1	151401084	PW2017tail	colon	sgMlh1	151401084	A	G	SNV	Mutect2;Vardict	2	0.025	312	0	0	NA	exonic	Swt1	nonsynonymous SNV	Swt1:NM_025819:exon11:c.T1540C:p.C514R	1qG1	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.086206897	3	0.9999995	CAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	153754119	PW2017tail	colon	sgMlh1	153754119	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.058	227	0	0	NA	exonic	Rnasel	nonsynonymous SNV	Rnasel:NM_011882:exon4:c.C380T:p.T127M	1qG3	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.2	2	0.09705525	ACG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr1	180093970	PW2017tail	colon	sgMlh1	180093970	A	-	Deletion	Mutect2;Vardict	2	0.068	123	0	0	NA	exonic	Cdc42bpa	frameshift deletion	"Cdc42bpa:NM_001033285:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001346804:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001359541:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001359542:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001359543:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001359545:exon13:c.1674delA:p.N560Tfs*5,Cdc42bpa:NM_001359546:exon14:c.1467delA:p.N491Tfs*5,Cdc42bpa:NM_001359547:exon14:c.1362delA:p.N456Tfs*5,Cdc42bpa:NM_001359548:exon14:c.1362delA:p.N456Tfs*5,Cdc42bpa:NM_001359549:exon14:c.1362delA:p.N456Tfs*5"	1qH4	chr1-4867294-194959842	2	2	0	0.58	2	NON-ABERRANT	1	0.234482759	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr10	7126785	PW2017tail	colon	sgMlh1	7126785	C	-	Deletion	Mutect2;Strelka2;Vardict	3	0.07	142	0	0	NA	exonic	Cnksr3	frameshift deletion	Cnksr3:NM_172546:exon11:c.1129delG:p.V377Cfs*42	10qA1	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.24137931	NA	NA	ACA	frameshift	NA	NA	NA	-1
PW3330T2	chr10	20979552	PW2017tail	colon	sgMlh1	20979552	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.056	276	0	0	NA	exonic	Ahi1	nonsynonymous SNV	"Ahi1:NM_001358561:exon11:c.G1759A:p.V587M,Ahi1:NM_026203:exon11:c.G1759A:p.V587M"	10qA3	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.193103448	2	0.8572099	AGT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr10	23816368	PW2017tail	colon	sgMlh1	23816369	TC	-	Deletion	Strelka2;Vardict	2	0.0857	140	0	0	NA	exonic	Slc18b1	frameshift deletion	"Slc18b1:NM_001358813:exon6:c.26_27del:p.L11Qfs*49,Slc18b1:NM_001358812:exon7:c.524_525del:p.L177Qfs*49,Slc18b1:NM_183116:exon7:c.734_735del:p.L247Qfs*49"	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.295517241	NA	NA	ATC	frameshift	TC	8	TCTCTCTC	-2
PW3330T2	chr10	30690950	PW2017tail	colon	sgMlh1	30690950	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.058	147	0	0	NA	exonic	Ncoa7	synonymous SNV	"Ncoa7:NM_001358842:exon8:c.T1584C:p.G528G,Ncoa7:NM_001358841:exon9:c.T1698C:p.G566G,Ncoa7:NM_172495:exon9:c.T1731C:p.G577G"	10qA4	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.2	2	0.8023898	TAC	synonymous	NA	NA	NA	NA
PW3330T2	chr10	83614205	PW2017tail	colon	sgMlh1	83614207	CAT	-	Deletion	Mutect2;Vardict	2	0.031	174	0	0	NA	exonic	Appl2	nonframeshift deletion	Appl2:NM_145220:exon10:c.800_802del:p.D267del	10qC1	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.106896552	NA	NA	ACA	inframe	NA	NA	NA	-3
PW3330T2	chr10	89805342	PW2017tail	colon	sgMlh1	89805342	T	-	Deletion	Mutect2;Vardict	2	0.04	238	0	0	NA	exonic	Uhrf1bp1l	frameshift deletion	Uhrf1bp1l:NM_029166:exon14:c.2374delT:p.L793fs*0	10qC2	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.137931034	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T2	chr10	94127426	PW2017tail	colon	sgMlh1	94127426	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	259	0	0	NA	exonic	Fgd6	nonsynonymous SNV	Fgd6:NM_053072:exon14:c.C3385T:p.R1129C	10qC2	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.15862069	3	0.9406848	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr10	100575794	PW2017tail	colon	sgMlh1	100575794	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	127	0	0	NA	exonic	4930430F08Rik	synonymous SNV	4930430F08Rik:NM_175128:exon6:c.C712T:p.L238L	10qD1	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.172413793	3	0.6334286	AGC	synonymous	NA	NA	NA	NA
PW3330T2	chr10	117774568	PW2017tail	colon	sgMlh1	117774568	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	72	0	0	NA	exonic	Nup107	nonsynonymous SNV	Nup107:NM_134010:exon12:c.A974C:p.D325A	10qD2	chr10-5218416-128943022	2	1	1	0.58	2	NON-ABERRANT	1	0.431034483	2	0.9646782	GTC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr10	129607773	PW2017tail	colon	sgMlh1	129607773	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	127	0	0	NA	exonic	Olfr796	nonsynonymous SNV	Olfr796:NM_146931:exon1:c.G707A:p.R236H	10qD3	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	GCG	nonsynonymous	GCG	8	GCGGCGGC	NA
PW3330T2	chr10	129681895	PW2017tail	colon	sgMlh1	129681895	G	-	Deletion	Mutect2;Vardict	2	0.068	307	0	0	NA	exonic	Olfr802	frameshift deletion	Olfr802:NM_146932:exon1:c.843delC:p.M282Cfs*1	10qD3	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr10	129842936	PW2017tail	colon	sgMlh1	129842936	-	A	Insertion	Mutect2;Vardict	2	0.045	189	0	0	NA	exonic	Olfr812	frameshift insertion	Olfr812:NM_146795:exon1:c.104dupT:p.L35Ffs*53	10qD3	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	TCA	frameshift	NA	NA	NA	1
PW3330T2	chr11	9029357	PW2017tail	colon	sgMlh1	9029357	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	146	0	0	NA	exonic	Sun3	nonsynonymous SNV	"Sun3:NM_001290520:exon3:c.G163A:p.A55T,Sun3:NM_177576:exon4:c.G163A:p.A55T,Sun3:NM_001290519:exon5:c.G343A:p.A115T"	11qA1	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.317241379	2	0.9999495	GCA	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	40680059	PW2017tail	colon	sgMlh1	40680059	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.072	105	0	0	NA	exonic	Mat2b	nonsynonymous SNV	"Mat2b:NM_001199274:exon7:c.A937G:p.I313V,Mat2b:NM_134017:exon7:c.A970G:p.I324V"	11qA5	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.248275862	2	0.970257	ATG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	49215358	PW2017tail	colon	sgMlh1	49215358	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.043	301	0	0	NA	exonic	Zfp62	nonsynonymous SNV	"Zfp62:NM_001362726:exon2:c.C296A:p.T99N,Zfp62:NM_001362730:exon3:c.C275A:p.T92N,Zfp62:NM_001362725:exon4:c.C296A:p.T99N,Zfp62:NM_001362727:exon4:c.C296A:p.T99N,Zfp62:NM_009562:exon4:c.C296A:p.T99N,Zfp62:NM_001024846:exon5:c.C275A:p.T92N,Zfp62:NM_001362728:exon5:c.C275A:p.T92N,Zfp62:NM_001362729:exon5:c.C275A:p.T92N,Zfp62:NM_001362731:exon6:c.C275A:p.T92N"	11qB1.2	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.148275862	3	0.9913324	ACT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	49327551	PW2017tail	colon	sgMlh1	49327551	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	331	0	0	NA	exonic	Olfr1391	nonsynonymous SNV	Olfr1391:NM_146468:exon1:c.G139A:p.A47T	11qB1.2	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.120689655	3	0.999941	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	53162620	PW2017tail	colon	sgMlh1	53162620	C	-	Deletion	Mutect2;Vardict	2	0.061	112	0	0	NA	exonic	Fstl4	frameshift deletion	Fstl4:NM_177059:exon9:c.1098delC:p.L368Cfs*6	11qB1.3	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.210344828	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3330T2	chr11	58720923	PW2017tail	colon	sgMlh1	58720923	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.021	421	0	0	NA	exonic	Olfr318	nonsynonymous SNV	Olfr318:NM_146501:exon1:c.A124G:p.N42D	11qB1.3	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.072413793	3	1.18E-09	TTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	72906844	PW2017tail	colon	sgMlh1	72906844	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	122	0	0	NA	exonic	Zzef1	nonsynonymous SNV	Zzef1:NM_001045536:exon43:c.A6794G:p.Q2265R	11qB4	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.196551724	2	0.7177148	CAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	75669273	PW2017tail	colon	sgMlh1	75669273	A	G	SNV	Mutect2;Vardict	2	0.036	120	0	0	NA	exonic	Myo1c	synonymous SNV	"Myo1c:NM_001080774:exon21:c.A2106G:p.L702L,Myo1c:NM_001080775:exon21:c.A2154G:p.L718L,Myo1c:NM_001370611:exon21:c.A2211G:p.L737L,Myo1c:NM_008659:exon21:c.A2106G:p.L702L"	11qB5	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.124137931	3	0.9677772	TAG	synonymous	NA	NA	NA	NA
PW3330T2	chr11	78266960	PW2017tail	colon	sgMlh1	78266960	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	181	0	0	NA	exonic	2610507B11Rik	nonsynonymous SNV	2610507B11Rik:NM_001002004:exon10:c.G1040A:p.R347H	11qB5	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.113793103	3	0.9975279	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr11	79390366	PW2017tail	colon	sgMlh1	79390366	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.114	133	0	0	NA	exonic	Nf1	nonsynonymous SNV	Nf1:NM_010897:exon4:c.A446C:p.N149T	11qB5	chr11-3135564-121426601	2	1	1	0.58	2	NON-ABERRANT	1	0.393103448	2	0.9996602	AAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr12	8005072	PW2017tail	colon	sgMlh1	8005072	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.123	164	0	0	NA	exonic	Apob	nonsynonymous SNV	Apob:NM_009693:exon25:c.A4070C:p.D1357A	12qA1.1	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.424137931	2	0.9980671	GAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr12	24878320	PW2017tail	colon	sgMlh1	24878320	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.063	170	0	0	NA	exonic	Mboat2	frameshift deletion	"Mboat2:NM_001083341:exon2:c.205delT:p.C71Afs*19,Mboat2:NM_026037:exon2:c.205delT:p.C71Afs*19"	12qA1.3	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.217241379	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3330T2	chr12	28697212	PW2017tail	colon	sgMlh1	28697212	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.048	97	0	0	NA	exonic	Trappc12	nonsynonymous SNV	"Trappc12:NM_001161410:exon9:c.A1894G:p.T632A,Trappc12:NM_001377006:exon9:c.A1894G:p.T632A,Trappc12:NM_001377007:exon9:c.A1894G:p.T632A,Trappc12:NM_178811:exon9:c.A1894G:p.T632A"	12qA2	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.165517241	3	0.6854724	GTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr12	73545718	PW2017tail	colon	sgMlh1	73545718	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.104	49	0	0	NA	exonic	Tmem30b	nonsynonymous SNV	Tmem30b:NM_178715:exon1:c.A622G:p.N208D	12qC3	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.35862069	2	0.9794916	TTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr12	75984007	PW2017tail	colon	sgMlh1	75984007	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.041	163	0	0	NA	exonic	Syne2	synonymous SNV	Syne2:NM_001005510:exon54:c.T10884C:p.I3628I	12qC3	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.14137931	3	0.9601196	TTA	synonymous	NA	NA	NA	NA
PW3330T2	chr12	104702781	PW2017tail	colon	sgMlh1	104702781	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.049	218	0	0	NA	exonic	Dicer1	nonsynonymous SNV	Dicer1:NM_148948:exon21:c.A3641G:p.N1214S	12qE	chr12-3236683-119202587	2	1	1	0.58	2	NON-ABERRANT	1	0.168965517	3	0.7729254	ATT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr13	22852324	PW2017tail	colon	sgMlh1	22852324	A	-	Deletion	Mutect2;Vardict	2	0.037	252	0	0	NA	exonic	Vmn1r211	frameshift deletion	Vmn1r211:NM_134243:exon1:c.172delT:p.S58Qfs*6	13qA3.1	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.127586207	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr13	29691628	PW2017tail	colon	sgMlh1	29691628	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.041	156	0	0	NA	exonic	Cdkal1	synonymous SNV	Cdkal1:NM_144536:exon8:c.G606A:p.P202P	13qA3.2	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.14137931	3	0.954774	GCG	synonymous	NA	NA	NA	NA
PW3330T2	chr13	47239784	PW2017tail	colon	sgMlh1	47239784	C	T	SNV	Mutect2;Vardict	2	0.033	164	0	0	NA	exonic	Rnf144b	nonsynonymous SNV	"Rnf144b:NM_001170643:exon6:c.C598T:p.R200C,Rnf144b:NM_146042:exon6:c.C598T:p.R200C"	13qA5	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.113793103	3	0.9957141	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr13	49662217	PW2017tail	colon	sgMlh1	49662217	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.042	168	0	0	NA	exonic	Nol8	frameshift deletion	Nol8:NM_001271397:exon7:c.1800delA:p.K601Nfs*8	13qA5	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.144827586	NA	NA	TAA	frameshift	NA	NA	NA	-1
PW3330T2	chr13	73489053	PW2017tail	colon	sgMlh1	73489053	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.193	149	0	0	NA	exonic	Lpcat1	nonsynonymous SNV	"Lpcat1:NM_001368681:exon2:c.T139C:p.S47P,Lpcat1:NM_145376:exon3:c.T445C:p.S149P"	13qC1	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.665517241	1	4.02E-08	GTC	nonsynonymous	ACCATG	12	ACCATGACCATG	NA
PW3330T2	chr13	81524699	PW2017tail	colon	sgMlh1	81524700	AT	-	Deletion	Strelka2;Vardict	2	0.0753	146	0	0	NA	exonic	Adgrv1	frameshift deletion	Adgrv1:NM_054053:exon30:c.6553_6554del:p.I2185Hfs*1	13qC3	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.259655172	NA	NA	GAT	frameshift	AT	8	ATATATAT	-2
PW3330T2	chr13	93095309	PW2017tail	colon	sgMlh1	93095309	C	T	SNV	Mutect2;Vardict	2	0.047	97	0	0	NA	exonic	Cmya5	synonymous SNV	Cmya5:NM_023821:exon2:c.G3270A:p.T1090T	13qC3	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.162068966	3	0.7201593	ACG	synonymous	NA	NA	NA	NA
PW3330T2	chr13	105121398	PW2017tail	colon	sgMlh1	105121398	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.046	316	0	0	NA	exonic	Nt5el	nonsynonymous SNV	Nt5el:NM_025751:exon8:c.C1735T:p.R579C	13qD1	chr13-3556909-119495179	2	1	1	0.58	2	NON-ABERRANT	1	0.15862069	3	0.965944	ACG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr14	27238115	PW2017tail	colon	sgMlh1	27238115	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.184	61	0	0	NA	exonic	Arhgef3	nonsynonymous SNV	Arhgef3:NM_027871:exon1:c.C13T:p.R5C	14qA3	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.634482759	1	0.9922116	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr14	32426199	PW2017tail	colon	sgMlh1	32426199	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.054	79	0	0	NA	exonic	Chat	nonsynonymous SNV	Chat:NM_009891:exon9:c.A880G:p.T294A	14qB	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.186206897	2	7.64E-08	GTG	nonsynonymous	TG	9	TGTGTGTGT	NA
PW3330T2	chr14	54508907	PW2017tail	colon	sgMlh1	54508907	G	T	SNV	Mutect2;Vardict	2	0.033	179	0	0	NA	exonic	Prmt5	synonymous SNV	"Prmt5:NM_001313907:exon15:c.C1428A:p.I476I,Prmt5:NM_001313906:exon16:c.C1689A:p.I563I,Prmt5:NM_013768:exon16:c.C1746A:p.I582I"	14qC2	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.113793103	3	0.9973625	AGA	synonymous	GAA	8	GAAGAAGA	NA
PW3330T2	chr14	61205347	PW2017tail	colon	sgMlh1	61205347	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.027	293	0	0	NA	exonic	Sacs	nonsynonymous SNV	Sacs:NM_015788:exon10:c.G4841A:p.R1614K	14qD1	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.093103448	3	0.9999968	AGG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr14	62404551	PW2017tail	colon	sgMlh1	62404551	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	141	0	0	NA	exonic	Gucy1b2	synonymous SNV	"Gucy1b2:NM_001204340:exon15:c.C2121A:p.I707I,Gucy1b2:NM_172810:exon15:c.C2166A:p.I722I"	14qD1	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.748275862	1	1.06E-09	GGA	synonymous	NA	NA	NA	NA
PW3330T2	chr14	70440739	PW2017tail	colon	sgMlh1	70440739	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	68	0	0	NA	exonic	Polr3d	nonsynonymous SNV	"Polr3d:NM_001164082:exon5:c.A515G:p.D172G,Polr3d:NM_025945:exon6:c.A515G:p.D172G"	14qD2	chr14-3072210-123348696	2	1	1	0.58	2	NON-ABERRANT	1	0.262068966	2	0.9358114	GTC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr15	23367005	PW2017tail	colon	sgMlh1	23367005	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.047	113	0	0	NA	exonic	Cdh18	nonsynonymous SNV	Cdh18:NM_001081299:exon5:c.C796A:p.P266T	15qA2	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.162068966	3	0.7466875	ACC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr15	41869282	PW2017tail	colon	sgMlh1	41869282	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.058	151	0	0	NA	exonic	Abra	synonymous SNV	Abra:NM_175456:exon1:c.C387T:p.G129G	15qB3.1	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.2	2	0.8088804	CGC	synonymous	NA	NA	NA	NA
PW3330T2	chr15	55619821	PW2017tail	colon	sgMlh1	55619821	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	119	0	0	NA	exonic	Mtbp	synonymous SNV	Mtbp:NM_134092:exon19:c.C2412T:p.H804H	15qD1	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.151724138	3	0.8511538	ACG	synonymous	NA	NA	NA	NA
PW3330T2	chr15	68187155	PW2017tail	colon	sgMlh1	68187155	T	G	SNV	Mutect2;Strelka2	2	0.071	122	0	0	NA	exonic	Zfat	nonsynonymous SNV	"Zfat:NM_001145888:exon4:c.A530C:p.K177T,Zfat:NM_198644:exon4:c.A509C:p.K170T"	15qD2	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.244827586	2	0.9793651	TTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr15	85817471	PW2017tail	colon	sgMlh1	85817471	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.037	171	0	0	NA	exonic	Pkdrej	synonymous SNV	Pkdrej:NM_011105:exon1:c.T4263C:p.G1421G	15qE2	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.127586207	3	0.9890498	CAC	synonymous	NA	NA	NA	NA
PW3330T2	chr15	96420576	PW2017tail	colon	sgMlh1	96420576	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.088	135	0	0	NA	exonic	Scaf11	nonsynonymous SNV	Scaf11:NM_028148:exon11:c.C1106A:p.A369D	15qF1	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.303448276	2	0.9997299	AGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr15	99671980	PW2017tail	colon	sgMlh1	99671980	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.081	132	0	0	NA	exonic	Asic1	nonsynonymous SNV	Asic1:NM_009597:exon2:c.T181C:p.C61R	15qF1	chr15-4091145-103525164	2	1	1	0.58	2	NON-ABERRANT	1	0.279310345	2	0.9984191	GTG	nonsynonymous	TG	10	TGTGTGTGTG	NA
PW3330T2	chr16	3708780	PW2017tail	colon	sgMlh1	3708780	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	102	0	0	NA	exonic	Mefv	nonsynonymous SNV	"Mefv:NM_001161790:exon8:c.G2069A:p.R690H,Mefv:NM_001161791:exon8:c.G1979A:p.R660H,Mefv:NM_019453:exon8:c.G1979A:p.R660H"	16qA1	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr16	91861229	PW2017tail	colon	sgMlh1	91861229	A	-	Deletion	Mutect2;Vardict	2	0.047	140	0	0	NA	exonic	Itsn1	frameshift deletion	"Itsn1:NM_001110275:exon25:c.3198delA:p.K1068Nfs*25,Itsn1:NM_010587:exon25:c.3198delA:p.K1068Nfs*25"	16qC4	chr16-4677106-96819699	2	2	0	0.58	2	NON-ABERRANT	1	0.162068966	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr17	5975805	PW2017tail	colon	sgMlh1	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	250	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.789655172	1	1	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW3330T2	chr17	18184437	PW2017tail	colon	sgMlh1	18184437	T	C	SNV	Mutect2;MuSe;Vardict	3	0.077	217	0	0	NA	exonic	Vmn2r92	synonymous SNV	"Vmn2r92:NM_001104541:exon6:c.T1842C:p.P614P,Vmn2r92:NM_001385105:exon6:c.T1839C:p.P613P"	17qA3.2	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.265517241	2	0.9998981	CTA	synonymous	NA	NA	NA	NA
PW3330T2	chr17	28299814	PW2017tail	colon	sgMlh1	28299814	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.233	60	0	0	NA	exonic	Ppard	nonsynonymous SNV	Ppard:NM_011145:exon8:c.C1288T:p.P430S	17qA3.3	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.803448276	1	0.9999862	CCC	nonsynonymous	C	5	CCCCC	NA
PW3330T2	chr17	33138048	PW2017tail	colon	sgMlh1	33138048	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.051	158	0	0	NA	exonic	Morc2b	nonsynonymous SNV	"Morc2b:NM_177719:exon2:c.A749G:p.D250G,Morc2b:NM_001360203:exon3:c.A749G:p.D250G"	17qB1	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.175862069	3	0.5938502	ATC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr17	35153288	PW2017tail	colon	sgMlh1	35153288	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	102	0	0	NA	exonic	Prrc2a	synonymous SNV	"Prrc2a:NM_001199044:exon22:c.G5235A:p.E1745E,Prrc2a:NM_020027:exon22:c.G5235A:p.E1745E"	17qB1	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.220689655	2	0.8790686	GCT	synonymous	NA	NA	NA	NA
PW3330T2	chr17	37752356	PW2017tail	colon	sgMlh1	37752356	T	-	Deletion	Mutect2;Vardict	2	0.017	831	0	0	NA	exonic	Olfr121	frameshift deletion	Olfr121:NM_146629:exon2:c.501delT:p.F168Lfs*3	17qB1	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.05862069	NA	NA	ATT	frameshift	ATTTT	10	ATTTTATTTT	-1
PW3330T2	chr17	88009286	PW2017tail	colon	sgMlh1	88009286	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.065	253	0	0	NA	exonic	Fbxo11	nonsynonymous SNV	"Fbxo11:NM_001081034:exon8:c.T968C:p.V323A,Fbxo11:NM_001348248:exon8:c.T707C:p.V236A,Fbxo11:NM_001379303:exon8:c.T965C:p.V322A,Fbxo11:NM_001379304:exon8:c.T707C:p.V236A,Fbxo11:NM_001379305:exon8:c.T704C:p.V235A"	17qE4	chr17-3187835-89046578	2	1	1	0.58	2	NON-ABERRANT	1	0.224137931	2	0.9960676	GAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr18	5766789	PW2017tail	colon	sgMlh1	5766789	C	T	SNV	Mutect2;Vardict	2	0.032	138	0	0	NA	exonic	Zeb1	synonymous SNV	"Zeb1:NM_001360982:exon6:c.C1131T:p.G377G,Zeb1:NM_011546:exon6:c.C1299T:p.G433G,Zeb1:NM_001360981:exon7:c.C1248T:p.G416G"	18qA1	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.110344828	3	0.9921569	GCC	synonymous	NA	NA	NA	NA
PW3330T2	chr18	14757328	PW2017tail	colon	sgMlh1	14757328	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.101	105	0	0	NA	exonic	Psma8	frameshift deletion	Psma8:NM_001163609:exon5:c.524delA:p.N177Ifs*15	18qA1	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.348275862	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr18	21097350	PW2017tail	colon	sgMlh1	21097350	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.038	161	0	0	NA	exonic	Mep1b	nonsynonymous SNV	Mep1b:NM_008586:exon14:c.G1958A:p.R653Q	18qA2	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.131034483	3	0.9814996	CGA	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr18	24002715	PW2017tail	colon	sgMlh1	24002715	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.131	173	0	0	NA	exonic	Zfp35	nonsynonymous SNV	Zfp35:NM_011755:exon3:c.A115C:p.T39P	18qA2	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.451724138	2	0.969754	AAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr18	34312303	PW2017tail	colon	sgMlh1	34312304	CA	-	Deletion	Strelka2;Vardict	2	0.2657	143	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2074_2075del:p.H692Rfs*1,Apc:NM_007462:exon16:c.2251_2252del:p.H751Rfs*1,Apc:NM_001360980:exon17:c.2305_2306del:p.H769Rfs*1"	18qB1	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.916206897	NA	NA	TCA	frameshift	NA	NA	NA	-2
PW3330T2	chr18	36948411	PW2017tail	colon	sgMlh1	36948411	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.044	189	0	0	NA	exonic	Pcdha3	synonymous SNV	Pcdha3:NM_138662:exon1:c.C2205T:p.S735S	18qB2	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.151724138	3	0.9368804	GCG	synonymous	NA	NA	NA	NA
PW3330T2	chr18	37302297	PW2017tail	colon	sgMlh1	37302297	G	A	SNV	Mutect2;Vardict	2	0.017	464	0	0	NA	exonic	Pcdhb3	nonsynonymous SNV	Pcdhb3:NM_053128:exon1:c.G1315A:p.V439M	18qB3	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.05862069	3	1.00E-09	AGT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr18	44009207	PW2017tail	colon	sgMlh1	44009207	A	-	Deletion	Mutect2;Vardict	2	0.046	200	0	0	NA	exonic	Spink5	frameshift deletion	Spink5:NM_001081180:exon22:c.2047delA:p.N684Ifs*24	18qB3	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.15862069	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr18	57730831	PW2017tail	colon	sgMlh1	57730831	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.096	79	0	0	NA	exonic	Ccdc192	nonsynonymous SNV	Ccdc192:NM_029290:exon7:c.A706G:p.T236A	18qD3	chr18-3281580-80194980	2	1	1	0.58	2	NON-ABERRANT	1	0.331034483	2	0.9969002	CAC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr19	10902732	PW2017tail	colon	sgMlh1	10902732	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.197	141	0	0	NA	exonic	Prpf19	nonsynonymous SNV	"Prpf19:NM_001253844:exon10:c.C760T:p.R254C,Prpf19:NM_001253843:exon12:c.C1072T:p.R358C,Prpf19:NM_134129:exon12:c.C1015T:p.R339C"	19qA	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.679310345	1	3.19E-08	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr19	10984841	PW2017tail	colon	sgMlh1	10984841	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.12	136	0	0	NA	exonic	Ms4a15	synonymous SNV	Ms4a15:NM_001034898:exon2:c.C63T:p.N21N	19qA	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.413793103	2	0.9982461	CGT	synonymous	NA	NA	NA	NA
PW3330T2	chr19	16641572	PW2017tail	colon	sgMlh1	16641572	A	-	Deletion	Strelka2;Vardict	2	0.0521	96	0	0	NA	exonic	Vps13a	frameshift deletion	Vps13a:NM_173028:exon63:c.8629delT:p.Y2877Mfs*19	19qA	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.179655172	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr19	21798125	PW2017tail	colon	sgMlh1	21798125	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	200	0	0	NA	exonic	Cemip2	nonsynonymous SNV	"Cemip2:NM_001033759:exon4:c.C731T:p.A244V,Cemip2:NM_031997:exon5:c.C731T:p.A244V"	19qB	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.120689655	3	0.9973534	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr19	26886471	PW2017tail	colon	sgMlh1	26886471	T	-	Deletion	Mutect2;Vardict	2	0.094	182	0	0	NA	exonic	Gm815	frameshift deletion	Gm815:NM_001033407:exon2:c.111delT:p.F39Sfs*52	19qC1	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3330T2	chr19	40939384	PW2017tail	colon	sgMlh1	40939384	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.032	205	0	0	NA	exonic	Blnk	nonsynonymous SNV	"Blnk:NM_001365054:exon13:c.A920C:p.K307T,Blnk:NM_008528:exon13:c.A920C:p.K307T"	19qC3	chr19-3378213-59322783	2	1	1	0.58	2	NON-ABERRANT	1	0.110344828	3	0.9992007	CTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	19511800	PW2017tail	colon	sgMlh1	19511800	T	-	Deletion	Mutect2;Vardict	2	0.034	236	0	0	NA	exonic	4921504E06Rik	frameshift deletion	4921504E06Rik:NM_027600:exon8:c.858delA:p.K286Nfs*1	2qA3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.117241379	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3330T2	chr2	20892144	PW2017tail	colon	sgMlh1	20892144	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.053	131	0	0	NA	exonic	Arhgap21	nonsynonymous SNV	"Arhgap21:NM_001081364:exon4:c.C320A:p.T107N,Arhgap21:NM_001128084:exon4:c.C320A:p.T107N"	2qA3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.182758621	2	0.5282441	GGT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	34866902	PW2017tail	colon	sgMlh1	34866902	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.06	194	0	0	NA	exonic	Psmd5	synonymous SNV	Psmd5:NM_080554:exon2:c.T309G:p.T103T	2qB	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.206896552	2	0.9277914	GAG	synonymous	NA	NA	NA	NA
PW3330T2	chr2	59724837	PW2017tail	colon	sgMlh1	59724837	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.133	67	0	0	NA	exonic	Tanc1	frameshift deletion	"Tanc1:NM_001290659:exon3:c.238delA:p.K81Nfs*22,Tanc1:NM_198294:exon4:c.238delA:p.K81Nfs*22"	2qC1.1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.45862069	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr2	67509334	PW2017tail	colon	sgMlh1	67509334	A	T	SNV	Mutect2;Vardict	2	0.052	123	0	0	NA	exonic	Xirp2	nonsynonymous SNV	"Xirp2:NM_001024618:exon7:c.A1918T:p.I640L,Xirp2:NM_001083919:exon7:c.A1918T:p.I640L"	2qC1.3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.179310345	3	0.5279801	AAT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	85399675	PW2017tail	colon	sgMlh1	85399675	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.062	143	0	0	NA	exonic	Olfr992	nonsynonymous SNV	Olfr992:NM_146865:exon1:c.A857C:p.N286T	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	2	0.9121363	GTT	nonsynonymous	G	5	GGGGG	NA
PW3330T2	chr2	86047017	PW2017tail	colon	sgMlh1	86047017	T	C	SNV	Mutect2;Vardict	2	0.014	521	0	0	NA	exonic	Olfr1034	synonymous SNV	Olfr1034:NM_001011872:exon1:c.T534C:p.A178A	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.048275862	3	1.00E-09	CTG	synonymous	NA	NA	NA	NA
PW3330T2	chr2	87672067	PW2017tail	colon	sgMlh1	87672067	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.079	186	0	0	NA	exonic	Olfr1135	nonsynonymous SNV	Olfr1135:NM_146660:exon1:c.A299G:p.Q100R	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.272413793	2	0.9997963	TTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	88034225	PW2017tail	colon	sgMlh1	88034225	T	-	Deletion	Strelka2;Vardict	2	0.0787	127	0	0	NA	exonic	Olfr73	stopgain	Olfr73:NM_054090:exon1:c.913delA:p.I305fs*0	2qD	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.27137931	NA	NA	ATT	nonsynonymous	T	8	TTTTTTTT	-1
PW3330T2	chr2	89417761	PW2017tail	colon	sgMlh1	89417761	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.024	309	0	0	NA	exonic	Olfr1239	synonymous SNV	Olfr1239:NM_146970:exon1:c.G651A:p.G217G	2qE1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.082758621	3	0.9999997	CCC	synonymous	NA	NA	NA	NA
PW3330T2	chr2	90708128	PW2017tail	colon	sgMlh1	90708136	CATAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.107	211	0	0	NA	exonic	Nup160	frameshift deletion	Nup160:NM_021512:exon20:c.2274_2277del:p.E759Lfs*10	2qE1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.368965517	NA	NA	TCA	frameshift	T	7	TTTTTTT	-9
PW3330T2	chr2	111449542	PW2017tail	colon	sgMlh1	111449542	G	A	SNV	Mutect2;Vardict	2	0.00954	798	0	0	NA	exonic	Olfr1287	nonsynonymous SNV	Olfr1287:NM_001011773:exon1:c.G401A:p.S134N	2qE3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.032896552	3	1	AGC	nonsynonymous	CAG	8	CAGCAGCA	NA
PW3330T2	chr2	112849606	PW2017tail	colon	sgMlh1	112849606	A	-	Deletion	Mutect2;Vardict	2	0.065	133	0	0	NA	exonic	Ryr3	frameshift deletion	Ryr3:NM_001319156:exon28:c.3637delT:p.Y1213Ifs*14	2qE3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.224137931	NA	NA	TAA	frameshift	NA	NA	NA	-1
PW3330T2	chr2	131287580	PW2017tail	colon	sgMlh1	131287580	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.049	233	0	0	NA	exonic	Pank2	nonsynonymous SNV	"Pank2:NM_153501:exon5:c.A1138G:p.M380V,Pank2:NM_001355681:exon6:c.A646G:p.M216V,Pank2:NM_001355682:exon6:c.A646G:p.M216V"	2qF1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.168965517	3	0.7859665	AAT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	153399446	PW2017tail	colon	sgMlh1	153399446	G	-	Deletion	Strelka2;Vardict	2	0.1471	68	0	0	NA	exonic	Asxl1	frameshift deletion	Asxl1:NM_001039939:exon12:c.1918delG:p.G642Vfs*57	2qH1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.507241379	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3330T2	chr2	156097982	PW2017tail	colon	sgMlh1	156097982	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	271	0	0	NA	exonic	Rbm12	synonymous SNV	"Rbm12:NM_029397:exon3:c.A369G:p.V123V,Rbm12:NM_170598:exon3:c.A369G:p.V123V"	2qH1	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.086206897	3	0.9999968	GTA	synonymous	NA	NA	NA	NA
PW3330T2	chr2	162135469	PW2017tail	colon	sgMlh1	162135469	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.087	97	0	0	NA	exonic	Ptprt	nonsynonymous SNV	"Ptprt:NM_001291149:exon7:c.C908T:p.A303V,Ptprt:NM_001291150:exon7:c.C908T:p.A303V,Ptprt:NM_001291151:exon7:c.C908T:p.A303V,Ptprt:NM_021464:exon7:c.C908T:p.A303V"	2qH2	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.3	2	0.9966703	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr2	172982048	PW2017tail	colon	sgMlh1	172982048	G	C	SNV	Mutect2;Strelka2;Vardict	3	0.035	249	0	0	NA	exonic	Spo11	synonymous SNV	Spo11:NM_012046:exon2:c.G201C:p.V67V	2qH3	chr2-4992194-180717794	2	1	1	0.58	2	NON-ABERRANT	1	0.120689655	3	0.9993612	TGC	synonymous	TGCC	9	TGCCTGCCT	NA
PW3330T2	chr3	10182402	PW2017tail	colon	sgMlh1	10182402	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.027	257	0	0	NA	exonic	Pmp2	nonsynonymous SNV	Pmp2:NM_001030305:exon2:c.G226A:p.A76T	3qA1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.093103448	3	0.999985	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr3	54734149	PW2017tail	colon	sgMlh1	54734149	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.029	230	0	0	NA	exonic	Exosc8	synonymous SNV	"Exosc8:NM_001163570:exon3:c.T72C:p.P24P,Exosc8:NM_027148:exon3:c.T72C:p.P24P"	3qC	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.1	3	0.9998957	CAG	synonymous	NA	NA	NA	NA
PW3330T2	chr3	63985633	PW2017tail	colon	sgMlh1	63985633	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.086	216	0	0	NA	exonic	Gmps	frameshift deletion	Gmps:NM_001033300:exon4:c.358delA:p.S122Vfs*35	3qE1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.296551724	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr3	68616550	PW2017tail	colon	sgMlh1	68616550	C	-	Deletion	Mutect2;Vardict	2	0.036	248	0	0	NA	exonic	Iqschfp;Schip1	frameshift deletion	"Schip1:NM_001113420:exon3:c.296delC:p.M101fs*0,Schip1:NM_013928:exon3:c.260delC:p.M89fs*0,Schip1:NM_001113421:exon4:c.980delC:p.M329fs*0,Schip1:NM_001282044:exon4:c.896delC:p.M301fs*0,Schip1:NM_001282045:exon4:c.896delC:p.M301fs*0,Iqschfp:NM_001113419:exon7:c.1205delC:p.M404fs*0"	3qE1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.124137931	NA	NA	TCC	frameshift	C	5	CCCCC	-1
PW3330T2	chr3	82903355	PW2017tail	colon	sgMlh1	82903355	C	T	SNV	Mutect2;Vardict	2	0.031	180	0	0	NA	exonic	Lrat	nonsynonymous SNV	Lrat:NM_023624:exon1:c.G358A:p.A120T	3qE3	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.106896552	3	0.9986205	GCT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr3	89348543	PW2017tail	colon	sgMlh1	89348543	G	-	Deletion	Mutect2;Vardict	2	0.053	130	0	0	NA	exonic	Adam15	frameshift deletion	"Adam15:NM_001037722:exon2:c.164delC:p.P55Qfs*1,Adam15:NM_009614:exon2:c.164delC:p.P55Qfs*1"	3qF1	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.182758621	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr3	100186611	PW2017tail	colon	sgMlh1	100186611	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	116	0	0	NA	exonic	Gdap2	synonymous SNV	Gdap2:NM_010269:exon7:c.A678G:p.S226S	3qF2.2	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.313793103	2	0.999517	CAT	synonymous	NA	NA	NA	NA
PW3330T2	chr3	101007972	PW2017tail	colon	sgMlh1	101007972	-	A	Insertion	Strelka2;Vardict	2	0.0282	213	0	0	NA	exonic	Cd101	frameshift insertion	Cd101:NM_001167906:exon7:c.2289dupT:p.L764Sfs*6	3qF2.2	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.097241379	NA	NA	AGA	frameshift	NA	NA	NA	1
PW3330T2	chr3	108413055	PW2017tail	colon	sgMlh1	108413055	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.079	107	0	0	NA	exonic	Celsr2	frameshift deletion	"Celsr2:NM_001004177:exon1:c.2440delC:p.Q814Sfs*32,Celsr2:NM_017392:exon1:c.2440delC:p.Q814Sfs*32"	3qF3	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.272413793	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr3	108413259	PW2017tail	colon	sgMlh1	108413259	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.08	92	0	0	NA	exonic	Celsr2	synonymous SNV	"Celsr2:NM_001004177:exon1:c.C2236A:p.R746R,Celsr2:NM_017392:exon1:c.C2236A:p.R746R"	3qF3	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.275862069	2	0.9866047	CGG	synonymous	NA	NA	NA	NA
PW3330T2	chr3	108903981	PW2017tail	colon	sgMlh1	108903981	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.025	222	0	0	NA	exonic	Prpf38b	nonsynonymous SNV	"Prpf38b:NM_025845:exon6:c.A1567G:p.S523G,Prpf38b:NM_001356292:exon7:c.A973G:p.S325G"	3qF3	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.086206897	3	0.9999688	CTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr3	136877661	PW2017tail	colon	sgMlh1	136877661	C	T	SNV	Mutect2;Vardict	2	0.031	133	0	0	NA	exonic	Ppp3ca	synonymous SNV	"Ppp3ca:NM_001293622:exon5:c.C528T:p.D176D,Ppp3ca:NM_008913:exon5:c.C528T:p.D176D"	3qG3	chr3-8666483-159911278	2	1	1	0.58	2	NON-ABERRANT	1	0.106896552	3	0.9925879	ACG	synonymous	NA	NA	NA	NA
PW3330T2	chr4	43696600	PW2017tail	colon	sgMlh1	43696600	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.188	167	0	0	NA	exonic	Olfr70	nonsynonymous SNV	Olfr70:NM_019485:exon2:c.A572G:p.D191G	4qB1	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.648275862	1	2.67E-08	GTC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr4	46083586	PW2017tail	colon	sgMlh1	46083586	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.102	98	0	0	NA	exonic	Tmod1	nonsynonymous SNV	Tmod1:NM_021883:exon4:c.T320G:p.L107R	4qB1	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.351724138	2	0.9996082	CTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr4	88603044	PW2017tail	colon	sgMlh1	88603044	T	G	SNV	Mutect2;MuSe;Vardict	3	0.095	595	0	0	NA	exonic	Ifna12	nonsynonymous SNV	Ifna12:NM_177361:exon1:c.A265C:p.T89P	4qC4	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.327586207	2	1	GTC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr4	104861394	PW2017tail	colon	sgMlh1	104861394	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.087	148	0	0	NA	exonic	C8a	synonymous SNV	"C8a:NM_001290645:exon3:c.C231T:p.C77C,C8a:NM_001316667:exon4:c.C363T:p.C121C,C8a:NM_146148:exon4:c.C363T:p.C121C"	4qC6	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.3	2	0.9998441	GGC	synonymous	NA	NA	NA	NA
PW3330T2	chr4	106371031	PW2017tail	colon	sgMlh1	106371031	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	140	0	0	NA	exonic	Usp24	synonymous SNV	Usp24:NM_183225:exon20:c.C2289T:p.D763D	4qC7	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.168965517	3	0.6964263	ACG	synonymous	NA	NA	NA	NA
PW3330T2	chr4	116530506	PW2017tail	colon	sgMlh1	116530506	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.068	213	0	0	NA	exonic	Ipp	nonsynonymous SNV	Ipp:NM_008389:exon7:c.G1280A:p.R427H	4qD1	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.234482759	2	0.9967801	CGC	nonsynonymous	CTA	8	CTACTACT	NA
PW3330T2	chr4	136675438	PW2017tail	colon	sgMlh1	136675438	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	91	0	0	NA	exonic	Ephb2	nonsynonymous SNV	"Ephb2:NM_001290753:exon7:c.G1524T:p.Q508H,Ephb2:NM_010142:exon7:c.G1521T:p.Q507H"	4qD3	chr4-5799947-156200568	2	1	1	0.58	2	NON-ABERRANT	1	0.244827586	2	0.9452192	CCT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr5	21319545	PW2017tail	colon	sgMlh1	21319545	T	-	Deletion	Strelka2;Vardict	2	0.0903	144	0	0	NA	exonic	Ccdc146	stopgain	Ccdc146:NM_029195:exon7:c.808delA:p.M270fs*0	5qA3	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.31137931	NA	NA	ATT	nonsynonymous	T	5	TTTTT	-1
PW3330T2	chr5	31072682	PW2017tail	colon	sgMlh1	31072682	C	-	Deletion	Mutect2;Vardict	2	0.065	97	0	0	NA	exonic	Cad	frameshift deletion	"Cad:NM_001289522:exon28:c.4522delC:p.I1510Sfs*45,Cad:NM_001289523:exon28:c.4522delC:p.I1510Sfs*45,Cad:NM_023525:exon28:c.4522delC:p.I1510Sfs*45"	5qB1	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.224137931	NA	NA	ACC	frameshift	C	5	CCCCC	-1
PW3330T2	chr5	43821691	PW2017tail	colon	sgMlh1	43821691	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.048	137	0	0	NA	exonic	Bst1	synonymous SNV	Bst1:NM_009763:exon3:c.C376T:p.L126L	5qB3	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.165517241	3	0.7407596	GCT	synonymous	NA	NA	NA	NA
PW3330T2	chr5	67705974	PW2017tail	colon	sgMlh1	67705974	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	139	0	0	NA	exonic	Atp8a1	nonsynonymous SNV	"Atp8a1:NM_009727:exon22:c.C1973T:p.T658M,Atp8a1:NM_001038999:exon23:c.C2018T:p.T673M,Atp8a1:NM_001284345:exon23:c.C2018T:p.T673M"	5qC3.1	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.15862069	3	0.8234408	CGT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr5	93638819	PW2017tail	colon	sgMlh1	93638819	G	A	SNV	Mutect2;MuSe;Vardict	3	0.124	102	0	0	NA	exonic	Pramel34	synonymous SNV	Pramel34:NM_001164284:exon4:c.C90T:p.F30F	5qE2	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.427586207	2	0.9860362	GGA	synonymous	NA	NA	NA	NA
PW3330T2	chr5	100365796	PW2017tail	colon	sgMlh1	100365796	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	104	0	0	NA	exonic	Sec31a	nonsynonymous SNV	"Sec31a:NM_001359349:exon23:c.C2365T:p.P789S,Sec31a:NM_001359332:exon24:c.C3172T:p.P1058S,Sec31a:NM_001359344:exon24:c.C3217T:p.P1073S,Sec31a:NM_001359348:exon24:c.C3217T:p.P1073S,Sec31a:NM_001359350:exon24:c.C3172T:p.P1058S,Sec31a:NM_001359323:exon25:c.C3265T:p.P1089S,Sec31a:NM_026969:exon25:c.C3256T:p.P1086S"	5qE4	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.175862069	3	0.572439	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr5	112363174	PW2017tail	colon	sgMlh1	112363174	-	T	Insertion	Mutect2;Vardict	2	0.07	93	0	0	NA	exonic	Hps4	frameshift insertion	"Hps4:NM_001359853:exon5:c.343dupT:p.H117Sfs*79,Hps4:NM_138646:exon5:c.343dupT:p.H117Sfs*79"	5qF	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.24137931	NA	NA	GAT	frameshift	T	5	TTTTT	1
PW3330T2	chr5	135153029	PW2017tail	colon	sgMlh1	135153029	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	75	0	0	NA	exonic	Tbl2	synonymous SNV	Tbl2:NM_013763:exon2:c.G222A:p.T74T	5qG2	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.25862069	2	0.944787	CGC	synonymous	C	5	CCCCC	NA
PW3330T2	chr5	138266117	PW2017tail	colon	sgMlh1	138266117	G	A	SNV	Mutect2;Vardict	2	0.058	96	0	0	NA	exonic	Gal3st4	nonsynonymous SNV	"Gal3st4:NM_001347507:exon4:c.C604T:p.R202C,Gal3st4:NM_001361283:exon4:c.C619T:p.R207C"	5qG2	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.2	2	0.7053191	CGG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr5	142143878	PW2017tail	colon	sgMlh1	142143878	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.136	138	0	0	NA	exonic	Sdk1	nonsynonymous SNV	Sdk1:NM_177879:exon33:c.G4853T:p.S1618I	5qG2	chr5-3582305-151648188	2	2	0	0.58	2	NON-ABERRANT	1	0.468965517	2	0.8280344	AGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr6	34875498	PW2017tail	colon	sgMlh1	34875498	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.054	106	0	0	NA	exonic	Cyren	synonymous SNV	Cyren:NM_001347101:exon3:c.C261T:p.G87G	6qB1	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.186206897	2	0.5621375	CGC	synonymous	NA	NA	NA	NA
PW3330T2	chr6	42927354	PW2017tail	colon	sgMlh1	42927354	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.21	190	0	0	NA	exonic	Olfr446	nonsynonymous SNV	Olfr446:NM_146295:exon1:c.T122G:p.I41S	6qB2.1	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.724137931	1	1.00E-09	ATT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr6	64730106	PW2017tail	colon	sgMlh1	64730106	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.105	37	0	0	NA	exonic	Atoh1	synonymous SNV	Atoh1:NM_007500:exon1:c.A784C:p.R262R	6qC1	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.362068966	2	0.9471115	GAG	synonymous	NA	NA	NA	NA
PW3330T2	chr6	122456446	PW2017tail	colon	sgMlh1	122456446	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.057	91	0	0	NA	exonic	Rimklb	synonymous SNV	Rimklb:NM_027664:exon6:c.C915T:p.S305S	6qF1	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.196551724	2	0.6603838	GGG	synonymous	NA	NA	NA	NA
PW3330T2	chr6	123839361	PW2017tail	colon	sgMlh1	123839361	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.026	339	0	0	NA	exonic	Vmn2r25	synonymous SNV	Vmn2r25:NM_001104641:exon3:c.G1260A:p.E420E	6qF2	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.089655172	3	0.9999997	GCT	synonymous	NA	NA	NA	NA
PW3330T2	chr6	125137392	PW2017tail	colon	sgMlh1	125137392	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	100	0	0	NA	exonic	Nop2	nonsynonymous SNV	Nop2:NM_138747:exon8:c.G725A:p.R242Q	6qF2	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.227586207	2	0.09236763	CGA	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr6	136401760	PW2017tail	colon	sgMlh1	136401760	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	94	0	0	NA	exonic	E330021D16Rik	nonsynonymous SNV	E330021D16Rik:NM_001201390:exon2:c.G71A:p.R24H	6qG1	chr6-3483595-149019484	2	1	1	0.58	2	NON-ABERRANT	1	0.224137931	2	0.8786337	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	19579690	PW2017tail	colon	sgMlh1	19579690	G	A	SNV	Mutect2;Vardict	2	0.063	68	0	0	NA	exonic	Zfp296	nonsynonymous SNV	Zfp296:NM_022409:exon3:c.G469A:p.A157T	7qA3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.217241379	2	0.7622722	CGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	23321880	PW2017tail	colon	sgMlh1	23321880	-	A	Insertion	Mutect2;Vardict	2	0.027	592	0	0	NA	exonic	Nlrp4e	frameshift insertion	Nlrp4e:NM_001004194:exon2:c.1792dupA:p.L600Tfs*10	7qA3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.093103448	NA	NA	TGA	frameshift	A	5	AAAAA	1
PW3330T2	chr7	26567842	PW2017tail	colon	sgMlh1	26567842	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	375	0	0	NA	exonic	Nlrp9a	synonymous SNV	"Nlrp9a:NM_001048220:exon6:c.C2196T:p.Y732Y,Nlrp9a:NM_001302792:exon6:c.C2094T:p.Y698Y,Nlrp9a:NM_001048219:exon7:c.C2361T:p.Y787Y"	7qA3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.120689655	3	0.9999836	ACT	synonymous	NA	NA	NA	NA
PW3330T2	chr7	27853552	PW2017tail	colon	sgMlh1	27853552	A	G	SNV	Mutect2;Vardict	2	0.029	191	0	0	NA	exonic	Zfp59	nonsynonymous SNV	Zfp59:NM_011762:exon5:c.A428G:p.Q143R	7qA3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.1	3	0.9995166	CAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	28560210	PW2017tail	colon	sgMlh1	28560210	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	102	0	0	NA	exonic	Pak4	nonsynonymous SNV	Pak4:NM_027470:exon9:c.C1561T:p.P521S	7qB1	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.182758621	2	0.5152505	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	30448176	PW2017tail	colon	sgMlh1	30448176	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.094	103	0	0	NA	exonic	Kirrel2	frameshift deletion	Kirrel2:NM_172898:exon15:c.2046delC:p.F683Sfs*34	7qB1	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.324137931	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr7	42903756	PW2017tail	colon	sgMlh1	42903756	T	C	SNV	Mutect2;MuSe;Vardict	3	0.063	508	0	0	NA	exonic	Vmn2r63	nonsynonymous SNV	Vmn2r63:NM_001105060:exon6:c.A2075G:p.K692R	7qB3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.217241379	2	0.9999248	CTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	80396023	PW2017tail	colon	sgMlh1	80396023	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.049	204	0	0	NA	exonic	Furin	nonsynonymous SNV	"Furin:NM_001081454:exon7:c.G604A:p.V202M,Furin:NM_011046:exon7:c.G604A:p.V202M"	7qD2	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.168965517	3	0.7602561	ACT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	86723301	PW2017tail	colon	sgMlh1	86723301	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.067	149	0	0	NA	exonic	Folh1	nonsynonymous SNV	"Folh1:NM_001159706:exon17:c.G1945T:p.G649C,Folh1:NM_016770:exon18:c.G2044T:p.G682C"	7qD3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.231034483	2	0.9763374	CCT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	87037297	PW2017tail	colon	sgMlh1	87037297	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.095	375	0	0	NA	exonic	Vmn2r79	nonsynonymous SNV	Vmn2r79:NM_001105190:exon6:c.T1885C:p.C629R	7qD3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.327586207	2	1.00E-09	TTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	103155499	PW2017tail	colon	sgMlh1	103155499	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.042	177	0	0	NA	exonic	Olfr589	frameshift deletion	Olfr589:NM_147052:exon1:c.247delA:p.M83Cfs*17	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.144827586	NA	NA	ATT	frameshift	NA	NA	NA	-1
PW3330T2	chr7	104769643	PW2017tail	colon	sgMlh1	104769643	G	A	SNV	Mutect2;Vardict	2	0.017	482	0	0	NA	exonic	Usp17le	synonymous SNV	Usp17le:NM_001256973:exon3:c.C291T:p.N97N	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.05862069	3	1.00E-09	CGT	synonymous	NA	NA	NA	NA
PW3330T2	chr7	107788648	PW2017tail	colon	sgMlh1	107788648	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.033	205	0	0	NA	exonic	Ovch2	nonsynonymous SNV	Ovch2:NM_172908:exon12:c.C1367T:p.A456V	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.113793103	3	0.9988646	AGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	107934050	PW2017tail	colon	sgMlh1	107934050	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.061	442	0	0	NA	exonic	Olfr473	frameshift deletion	Olfr473:NM_146775:exon1:c.529delT:p.F178Sfs*7	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.210344828	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3330T2	chr7	108124554	PW2017tail	colon	sgMlh1	108124554	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.058	356	0	0	NA	exonic	Olfr484	synonymous SNV	Olfr484:NM_146499:exon1:c.T708C:p.G236G	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.2	2	0.9725426	GAC	synonymous	NA	NA	NA	NA
PW3330T2	chr7	108172675	PW2017tail	colon	sgMlh1	108172675	T	G	SNV	Mutect2;MuSe;Vardict	3	0.07	333	0	0	NA	exonic	Olfr486	nonsynonymous SNV	Olfr486:NM_146496:exon1:c.A68C:p.D23A	7qE3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.24137931	2	0.9999619	GTC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	123247955	PW2017tail	colon	sgMlh1	123247955	A	C	SNV	Mutect2;Vardict	2	0.061	70	0	0	NA	exonic	Slc5a11	nonsynonymous SNV	Slc5a11:NM_146198:exon7:c.A390C:p.E130D	7qF3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.210344828	2	0.7237517	AAT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr7	123490214	PW2017tail	colon	sgMlh1	123490214	T	-	Deletion	Mutect2;Vardict	2	0.051	178	0	0	NA	exonic	Zkscan2	frameshift deletion	Zkscan2:NM_001081329:exon5:c.833delA:p.K278Rfs*5	7qF3	chr7-4830708-142893198	2	1	1	0.58	2	NON-ABERRANT	1	0.175862069	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3330T2	chr7	144611642	PW2017tail	colon	sgMlh1	144611642	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	118	0	0	NA	exonic	Ano1	synonymous SNV	"Ano1:NM_001242349:exon16:c.C1662T:p.G554G,Ano1:NM_178642:exon17:c.C1674T:p.G558G"	7qF5	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	AGC	synonymous	NA	NA	NA	NA
PW3330T2	chr8	24948754	PW2017tail	colon	sgMlh1	24948756	CAG	-	Deletion	Strelka2;Vardict	2	0.16	25	0	0	NA	exonic	Adam32	nonframeshift deletion	"Adam32:NM_001293693:exon1:c.40_42del:p.L14del,Adam32:NM_153397:exon1:c.40_42del:p.L14del"	8qA2	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.551724138	NA	NA	CCA	inframe	CAG	18	CAGCAGCAGCAGCAGCAG	-3
PW3330T2	chr8	48342706	PW2017tail	colon	sgMlh1	48342706	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.067	246	0	0	NA	exonic	Tenm3	synonymous SNV	"Tenm3:NM_001145937:exon8:c.G1548A:p.V516V,Tenm3:NM_011857:exon8:c.G1548A:p.V516V"	8qB1.2	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.231034483	2	0.9980169	CCA	synonymous	NA	NA	NA	NA
PW3330T2	chr8	80614129	PW2017tail	colon	sgMlh1	80614129	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	225	0	0	NA	exonic	Frem3	nonsynonymous SNV	Frem3:NM_001167898:exon1:c.G3050A:p.G1017D	8qC2	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.286206897	2	0.9999929	GGC	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr8	82069003	PW2017tail	colon	sgMlh1	82069003	A	-	Deletion	Mutect2;Vardict	2	0.051	206	0	0	NA	exonic	Inpp4b	frameshift deletion	"Inpp4b:NM_001297593:exon22:c.2272delA:p.R760Efs*3,Inpp4b:NM_001024617:exon23:c.2404delA:p.R804Efs*3,Inpp4b:NM_001297591:exon23:c.2455delA:p.R821Efs*3,Inpp4b:NM_001297596:exon23:c.2455delA:p.R821Efs*3"	8qC2	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.175862069	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr8	85029556	PW2017tail	colon	sgMlh1	85029556	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.189	114	0	0	NA	exonic	Trir	synonymous SNV	Trir:NM_026760:exon2:c.C354T:p.G118G	8qC3	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.651724138	1	0.9999915	GCG	synonymous	NA	NA	NA	NA
PW3330T2	chr8	93534589	PW2017tail	colon	sgMlh1	93534589	G	-	Deletion	Strelka2;Vardict	2	0.08	50	0	0	NA	exonic	Ces5a	frameshift deletion	"Ces5a:NM_001003951:exon2:c.197delC:p.P66Lfs*32,Ces5a:NM_001381850:exon2:c.209delC:p.P70Lfs*32"	8qC5	chr8-3624720-125736263	2	1	1	0.58	2	NON-ABERRANT	1	0.275862069	NA	NA	AGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr9	15997195	PW2017tail	colon	sgMlh1	15997195	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.074	124	0	0	NA	exonic	Fat3	nonsynonymous SNV	Fat3:NM_001080814:exon10:c.G7522A:p.A2508T	9qA2	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.255172414	2	0.9896733	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	21399217	PW2017tail	colon	sgMlh1	21399217	G	-	Deletion	Mutect2;Vardict	2	0.062	102	0	0	NA	exonic	Ilf3	frameshift deletion	"Ilf3:NM_001042707:exon14:c.1641delG:p.G549Afs*36,Ilf3:NM_001042709:exon14:c.1641delG:p.G549Afs*36,Ilf3:NM_001042708:exon15:c.1680delG:p.G562Afs*36,Ilf3:NM_001277321:exon15:c.1680delG:p.G562Afs*36,Ilf3:NM_010561:exon15:c.1680delG:p.G562Afs*36,Ilf3:NM_001277322:exon16:c.1680delG:p.G562Afs*36"	9qA3	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.213793103	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW3330T2	chr9	38736073	PW2017tail	colon	sgMlh1	38736073	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	104	0	0	NA	exonic	Vwa5a	nonsynonymous SNV	"Vwa5a:NM_001145957:exon14:c.A1747G:p.S583G,Vwa5a:NM_172767:exon15:c.A1747G:p.S583G"	9qA5.1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.203448276	2	0.7565535	TAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	54446956	PW2017tail	colon	sgMlh1	54446956	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	197	0	0	NA	exonic	Dmxl2	nonsynonymous SNV	Dmxl2:NM_172771:exon12:c.A1727C:p.N576T	9qA5.3	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.317241379	2	0.9999985	GTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	70581343	PW2017tail	colon	sgMlh1	70581343	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.086	145	0	0	NA	exonic	Sltm	frameshift deletion	"Sltm:NM_001357911:exon14:c.1546delA:p.R518Efs*15,Sltm:NM_025690:exon14:c.1774delA:p.R594Efs*15,Sltm:NM_026337:exon14:c.1720delA:p.R576Efs*15"	9qD	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.296551724	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr9	70768923	PW2017tail	colon	sgMlh1	70768923	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.041	158	0	0	NA	exonic	Adam10	nonsynonymous SNV	Adam10:NM_007399:exon14:c.A1939G:p.R647G	9qD	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.14137931	3	0.9563674	CAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	75217500	PW2017tail	colon	sgMlh1	75217500	T	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.083	159	0	0	NA	exonic	Myo5a	nonsynonymous SNV	Myo5a:NM_010864:exon40:c.T5330A:p.I1777N	9qD	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.286206897	2	0.9997606	ATT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	80136550	PW2017tail	colon	sgMlh1	80136550	A	-	Deletion	Mutect2;Vardict	2	0.039	163	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2441delA:p.T816Lfs*26,Senp6:NM_001311110:exon19:c.2462delA:p.T823Lfs*26"	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.134482759	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3330T2	chr9	80136750	PW2017tail	colon	sgMlh1	80136750	A	-	Deletion	Strelka2;Vardict	2	0.0862	116	0	0	NA	exonic	Senp6	frameshift deletion	"Senp6:NM_146003:exon18:c.2641delA:p.N884Ifs*43,Senp6:NM_001311110:exon19:c.2662delA:p.N891Ifs*43"	9qE1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.297241379	NA	NA	GAA	frameshift	A	11	AAAAAAAAAAA	-1
PW3330T2	chr9	98577387	PW2017tail	colon	sgMlh1	98577387	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.032	174	0	0	NA	exonic	Copb2	synonymous SNV	Copb2:NM_015827:exon9:c.G954A:p.K318K	9qE3.3	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.110344828	3	0.9976966	AGC	synonymous	NA	NA	NA	NA
PW3330T2	chr9	103426638	PW2017tail	colon	sgMlh1	103426638	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.097	45	0	0	NA	exonic	Bfsp2	nonsynonymous SNV	"Bfsp2:NM_001364514:exon4:c.G374A:p.R125Q,Bfsp2:NM_001002896:exon6:c.G1166A:p.R389Q"	9qF1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.334482759	2	0.9620563	CCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	104162314	PW2017tail	colon	sgMlh1	104162314	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.064	148	0	0	NA	exonic	Dnajc13	nonsynonymous SNV	"Dnajc13:NM_001163026:exon53:c.A6340G:p.N2114D,Dnajc13:NM_001359740:exon54:c.A6355G:p.N2119D"	9qF1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.220689655	2	0.9494685	TTG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	105130481	PW2017tail	colon	sgMlh1	105130481	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.07	69	0	0	NA	exonic	Nudt16	stopgain	Nudt16:NM_029385:exon3:c.438delC:p.Y146fs*0	9qF1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.24137931	NA	NA	CGT	nonsynonymous	NA	NA	NA	-1
PW3330T2	chr9	105396855	PW2017tail	colon	sgMlh1	105396855	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	224	0	0	NA	exonic	Aste1	nonsynonymous SNV	"Aste1:NM_025651:exon2:c.A293G:p.E98G,Aste1:NM_001357902:exon3:c.A110G:p.E37G"	9qF1	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.134482759	3	0.9939018	GAG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chr9	111258470	PW2017tail	colon	sgMlh1	111258501	CCCCGTGTCCCATCCTCACCGTGATCAGGGTG	-	Deletion	Strelka2;Vardict	2	0.1238	105	0	0	NA	exonic	Mlh1	frameshift deletion	Mlh1:NM_026810:exon5:c.441_453del:p.T148Wfs*7	9qF3	chr9-3342997-124108155	2	1	1	0.58	2	NON-ABERRANT	1	0.426896552	NA	NA	CCC	frameshift	C	5	CCCCC	-32
PW3330T2	chrX	7373900	PW2017tail	colon	sgMlh1	7373900	C	T	SNV	Mutect2;Vardict	2	0.02	266	0	0	NA	exonic	Usp27x	nonsynonymous SNV	Usp27x:NM_019461:exon1:c.G962A:p.R321H	XqA1.1	NA	NA	NA	NA	0.58	2	NON-ABERRANT	NA	NA	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW3330T2	chrX	8154928	PW2017tail	colon	sgMlh1	8154928	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.107	118	0	0	NA	exonic	Tbc1d25	nonsynonymous SNV	"Tbc1d25:NM_172478:exon6:c.A1844C:p.N615T,Tbc1d25:NM_001166437:exon7:c.A1949C:p.N650T"	XqA1.1	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.368965517	NA	NA	GTT	nonsynonymous	NA	NA	NA	NA
PW3330T2	chrX	37412388	PW2017tail	colon	sgMlh1	37412389	GA	-	Deletion	Mutect2;Vardict	2	0.048	464	0	0	NA	exonic	Rhox2b	frameshift deletion	Rhox2b:NM_001099316:exon2:c.116_117del:p.S41Wfs*34	XqA3.3	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.165517241	NA	NA	GGA	frameshift	NA	NA	NA	-2
PW3330T2	chrX	46329506	PW2017tail	colon	sgMlh1	46329506	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.053	180	0	0	NA	exonic	Actrt1	nonsynonymous SNV	Actrt1:NM_028514:exon1:c.G397A:p.V133M	XqA4	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.182758621	NA	NA	CGT	nonsynonymous	TGCC	9	TGCCTGCCT	NA
PW3330T2	chrX	49062257	PW2017tail	colon	sgMlh1	49062257	C	A	SNV	Mutect2;Vardict	2	0.028	145	0	0	NA	exonic	Enox2	nonsynonymous SNV	"Enox2:NM_001271448:exon5:c.G346T:p.V116L,Enox2:NM_001271447:exon6:c.G346T:p.V116L,Enox2:NM_001271449:exon6:c.G346T:p.V116L,Enox2:NM_001271450:exon6:c.G346T:p.V116L,Enox2:NM_001271451:exon6:c.G346T:p.V116L,Enox2:NM_145951:exon6:c.G346T:p.V116L"	XqA5	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.096551724	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
PW3330T2	chrX	74367530	PW2017tail	colon	sgMlh1	74367530	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.035	170	0	0	NA	exonic	Gm44504;Ubl4a	synonymous SNV	"Ubl4a:NM_145405:exon4:c.C420T:p.S140S,Gm44504:NM_001278271:exon7:c.C420T:p.S140S,Gm44504:NM_001278272:exon7:c.C420T:p.S140S"	XqA7.3	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.120689655	NA	NA	GGC	synonymous	NA	NA	NA	NA
PW3330T2	chrX	89932458	PW2017tail	colon	sgMlh1	89932458	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	213	0	0	NA	exonic	4930415L06Rik	synonymous SNV	4930415L06Rik:NM_001033880:exon2:c.T132C:p.S44S	XqC1	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.317241379	NA	NA	CAC	synonymous	NA	NA	NA	NA
PW3330T2	chrX	102069425	PW2017tail	colon	sgMlh1	102069425	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	82	0	0	NA	exonic	Rtl5	nonsynonymous SNV	Rtl5:NM_001278534:exon1:c.G1438A:p.A480T	XqD	chrX-7577595-169987429	2	2	0	0.58	2	NON-ABERRANT	1	0.382758621	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr1	88252353	PW2017tail	colon	sgMsh6	88252353	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.023	237	0	0	NA	exonic	Mroh2a	synonymous SNV	Mroh2a:NM_001281466:exon31:c.T3360C:p.G1120G	1qD	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	1	0.070769231	3	0.9999998	GTG	synonymous	NA	NA	NA	NA
PW3352T1	chr1	93335655	PW2017tail	colon	sgMsh6	93335655	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.046	115	0	0	NA	exonic	Pask	synonymous SNV	Pask:NM_080850:exon3:c.C378T:p.C126C	1qD	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	1	0.141538462	3	0.9660988	TGC	synonymous	NA	NA	NA	NA
PW3352T1	chr1	123384923	PW2017tail	colon	sgMsh6	123384923	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.104	125	0	0	NA	exonic	Dpp10	frameshift deletion	Dpp10:NM_199021:exon14:c.1324delA:p.I442Ffs*3	1qE2.3	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	1	0.32	NA	NA	ATT	frameshift	T	5	TTTTT	-1
PW3352T1	chr1	134994010	PW2017tail	colon	sgMsh6	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.948	18	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	2	1	1	0.9847429	GCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr1	157462047	PW2017tail	colon	sgMsh6	157462047	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.52	102	0	0	NA	exonic	Cryzl2	nonsynonymous SNV	"Cryzl2:NM_001033284:exon3:c.C254T:p.P85L,Cryzl2:NM_001356418:exon3:c.C254T:p.P85L,Cryzl2:NM_001356419:exon3:c.C254T:p.P85L"	1qH1	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	2	1	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr1	160203616	PW2017tail	colon	sgMsh6	160203616	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	105	0	0	NA	exonic	Cacybp	nonsynonymous SNV	Cacybp:NM_009786:exon6:c.C641T:p.A214V	1qH2.1	chr1-6233869-191013439	2	2	0	0.65	2	NON-ABERRANT	1	0.129230769	3	0.9753229	CGC	nonsynonymous	CCAC	8	CCACCCAC	NA
PW3352T1	chr10	20059082	PW2017tail	colon	sgMsh6	20059082	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	143	0	0	NA	exonic	Map3k5	nonsynonymous SNV	Map3k5:NM_008580:exon10:c.A1693G:p.R565G	10qA3	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.341538462	2	0.9999414	CAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr10	70953460	PW2017tail	colon	sgMsh6	70953460	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	93	0	0	NA	exonic	Bicc1	nonsynonymous SNV	"Bicc1:NM_001347189:exon9:c.G1120A:p.A374T,Bicc1:NM_031397:exon9:c.G1120A:p.A374T"	10qB5.3	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.353846154	2	0.9990237	GCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr10	80186942	PW2017tail	colon	sgMsh6	80186942	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.217	59	0	0	NA	exonic	Efna2	nonsynonymous SNV	Efna2:NM_007909:exon2:c.C319T:p.R107C	10qC1	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.667692308	1	0.9850874	GCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr10	81178767	PW2017tail	colon	sgMsh6	81178767	-	C	Insertion	Mutect2;Vardict	2	0.075	55	0	0	NA	exonic	Eef2	frameshift insertion	Eef2:NM_007907:exon4:c.488dupC:p.L164Pfs*42	10qC1	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.230769231	NA	NA	GGC	frameshift	NA	NA	NA	1
PW3352T1	chr10	100537783	PW2017tail	colon	sgMsh6	100537783	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.083	65	0	0	NA	exonic	Cep290	synonymous SNV	Cep290:NM_146009:exon31:c.G3924A:p.S1308S	10qD1	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.255384615	2	0.8547905	CGC	synonymous	NA	NA	NA	NA
PW3352T1	chr10	111299405	PW2017tail	colon	sgMsh6	111299405	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.106	162	0	0	NA	exonic	Bbs10	synonymous SNV	Bbs10:NM_027914:exon2:c.C378T:p.S126S	10qD1	chr10-5218416-130453386	2	1	1	0.65	2	NON-ABERRANT	1	0.326153846	2	0.9999449	CCC	synonymous	NA	NA	NA	NA
PW3352T1	chr11	23417709	PW2017tail	colon	sgMsh6	23417709	C	A	SNV	Mutect2;Vardict	2	0.047	92	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon37:c.C5045A:p.S1682Y	11qA3.2	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.144615385	3	0.9251867	TCT	nonsynonymous	AGTCT	16	TAGTCAAGTCTAGTCT	NA
PW3352T1	chr11	23473256	PW2017tail	colon	sgMsh6	23473256	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.059	91	0	0	NA	exonic	Usp34	nonsynonymous SNV	Usp34:NM_001190401:exon74:c.A9457G:p.N3153D	11qA3.2	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.181538462	3	0.7001696	CAA	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr11	73965433	PW2017tail	colon	sgMsh6	73965433	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.051	99	0	0	NA	exonic	Olfr397	nonsynonymous SNV	Olfr397:NM_146346:exon1:c.C824T:p.A275V	11qB4	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	3	0.8930743	GCT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr11	94429123	PW2017tail	colon	sgMsh6	94429123	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.146	43	0	0	NA	exonic	Cacna1g	nonsynonymous SNV	"Cacna1g:NM_001112813:exon21:c.C4157T:p.S1386F,Cacna1g:NM_001177888:exon21:c.C4157T:p.S1386F,Cacna1g:NM_001177890:exon21:c.C4106T:p.S1369F,Cacna1g:NM_009783:exon22:c.C4226T:p.S1409F"	11qD	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.449230769	2	0.9615519	GGA	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr11	97491088	PW2017tail	colon	sgMsh6	97491088	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.17	35	0	0	NA	exonic	4933428G20Rik	frameshift deletion	4933428G20Rik:NM_001289118:exon3:c.227delC:p.P76Qfs*8	11qD	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.523076923	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3352T1	chr11	97686514	PW2017tail	colon	sgMsh6	97686514	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.172	70	0	0	NA	exonic	Cisd3	nonsynonymous SNV	"Cisd3:NM_001085500:exon2:c.C128A:p.P43H,Cisd3:NM_001364153:exon3:c.C368A:p.P123H"	11qD	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.529230769	2	9.57E-06	CCC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr11	116604007	PW2017tail	colon	sgMsh6	116604007	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.121	42	0	0	NA	exonic	Rhbdf2	frameshift deletion	"Rhbdf2:NM_001167680:exon8:c.842delC:p.P281Hfs*25,Rhbdf2:NM_172572:exon8:c.842delC:p.P281Hfs*25"	11qE2	chr11-3132249-121238400	2	1	1	0.65	2	NON-ABERRANT	1	0.372307692	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3352T1	chr12	3904191	PW2017tail	colon	sgMsh6	3904191	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	187	0	0	NA	exonic	Dnmt3a	nonsynonymous SNV	"Dnmt3a:NM_153743:exon15:c.C1705T:p.R569C,Dnmt3a:NM_001271753:exon20:c.C2362T:p.R788C,Dnmt3a:NM_007872:exon20:c.C2362T:p.R788C"	12qA1.1	chr12-3252726-118041214	2	1	1	0.65	2	NON-ABERRANT	1	0.190769231	3	0.7394016	CCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr12	83951626	PW2017tail	colon	sgMsh6	83951626	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.091	55	0	0	NA	exonic	Riox1	nonsynonymous SNV	Riox1:NM_023633:exon1:c.A935G:p.Q312R	12qD1	chr12-3252726-118041214	2	1	1	0.65	2	NON-ABERRANT	1	0.28	2	0.8984591	CAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr13	11705746	PW2017tail	colon	sgMsh6	11705746	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.045	116	0	0	NA	exonic	Ryr2	nonsynonymous SNV	Ryr2:NM_023868:exon53:c.C8015T:p.A2672V	13qA1	chr13-5861853-119386446	2	1	1	0.65	2	NON-ABERRANT	1	0.138461538	3	0.9721891	CGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr13	59730193	PW2017tail	colon	sgMsh6	59730193	A	T	SNV	Mutect2;Strelka2;Vardict	3	0.05	134	0	0	NA	exonic	Spata31d1d	nonsynonymous SNV	Spata31d1d:NM_177711:exon3:c.T258A:p.H86Q	13qB2	chr13-5861853-119386446	2	1	1	0.65	2	NON-ABERRANT	1	0.153846154	3	0.9577666	CAT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr14	47016419	PW2017tail	colon	sgMsh6	47016419	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.036	147	0	0	NA	exonic	Samd4	synonymous SNV	"Samd4:NM_001163433:exon2:c.C36T:p.I12I,Samd4:NM_001037221:exon3:c.C339T:p.I113I,Samd4:NM_028966:exon3:c.C339T:p.I113I"	14qC1	chr14-3072210-123348696	2	1	1	0.65	2	NON-ABERRANT	1	0.110769231	3	0.998535	TCG	synonymous	NA	NA	NA	NA
PW3352T1	chr14	70895913	PW2017tail	colon	sgMsh6	70895913	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.313	51	0	0	NA	exonic	Gfra2	nonsynonymous SNV	Gfra2:NM_008115:exon2:c.G182A:p.R61Q	14qD2	chr14-3072210-123348696	2	1	1	0.65	2	NON-ABERRANT	1	0.963076923	1	0.999998	CGG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr15	82066282	PW2017tail	colon	sgMsh6	82066282	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.119	122	0	0	NA	exonic	4930407I10Rik	nonsynonymous SNV	4930407I10Rik:NM_001166475:exon2:c.T4379C:p.L1460P	15qE1	chr15-6735277-101693188	2	1	1	0.65	2	NON-ABERRANT	1	0.366153846	2	0.9999431	CTG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr15	98543573	PW2017tail	colon	sgMsh6	98543573	G	-	Deletion	Strelka2;Vardict	2	0.1038	106	0	0	NA	exonic	Ccnt1	frameshift deletion	Ccnt1:NM_009833:exon9:c.1813delC:p.L605Ffs*3	15qF1	chr15-6735277-101693188	2	1	1	0.65	2	NON-ABERRANT	1	0.319384615	NA	NA	AGG	frameshift	G	8	GGGGGGGG	-1
PW3352T1	chr15	102337184	PW2017tail	colon	sgMsh6	102337184	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.117	50	0	0	NA	exonic	Myg1	synonymous SNV	Myg1:NM_021713:exon5:c.C723T:p.A241A	15qF3	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	CCC	synonymous	NA	NA	NA	NA
PW3352T1	chr16	20526147	PW2017tail	colon	sgMsh6	20526147	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.038	149	0	0	NA	exonic	Dvl3	synonymous SNV	"Dvl3:NM_001347176:exon10:c.T1039C:p.L347L,Dvl3:NM_007889:exon10:c.T1039C:p.L347L"	16qA3	chr16-4677106-93596195	2	2	0	0.65	2	NON-ABERRANT	1	0.116923077	3	0.9979089	ATT	synonymous	NA	NA	NA	NA
PW3352T1	chr16	20736954	PW2017tail	colon	sgMsh6	20736954	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.077	115	0	0	NA	exonic	Chrd	synonymous SNV	"Chrd:NM_001278041:exon13:c.C1540T:p.L514L,Chrd:NM_001354996:exon13:c.C1474T:p.L492L,Chrd:NM_009893:exon13:c.C1474T:p.L492L,Chrd:NM_001354995:exon14:c.C37T:p.L13L"	16qB1	chr16-4677106-93596195	2	2	0	0.65	2	NON-ABERRANT	1	0.236923077	2	0.8805874	GCT	synonymous	NA	NA	NA	NA
PW3352T1	chr16	30309688	PW2017tail	colon	sgMsh6	30309688	A	G	SNV	Mutect2;Vardict	2	0.053	97	0	0	NA	exonic	Gp5	nonsynonymous SNV	Gp5:NM_008148:exon2:c.T167C:p.L56P	16qB2	chr16-4677106-93596195	2	2	0	0.65	2	NON-ABERRANT	1	0.163076923	3	0.8564272	CAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr17	5975805	PW2017tail	colon	sgMsh6	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.451	168	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.693846154	1	3.19E-08	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW3352T1	chr17	28576082	PW2017tail	colon	sgMsh6	28576082	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.059	90	0	0	NA	exonic	Lhfpl5	nonsynonymous SNV	Lhfpl5:NM_026571:exon1:c.A82C:p.M28L	17qA3.3	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.181538462	3	0.6978986	GAT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr17	29140446	PW2017tail	colon	sgMsh6	29140446	A	G	SNV	Mutect2;Vardict	2	0.048	118	0	0	NA	exonic	Rab44	nonsynonymous SNV	Rab44:NM_001364848:exon9:c.A2351G:p.Y784C	17qA3.3	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.147692308	3	0.9563401	TAC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr17	37752711	PW2017tail	colon	sgMsh6	37752711	G	A	SNV	Mutect2;Vardict	2	0.027	404	0	0	NA	exonic	Olfr121	nonsynonymous SNV	Olfr121:NM_146629:exon2:c.G856A:p.A286T	17qB1	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.083076923	3	1.06E-09	CGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr17	38336061	PW2017tail	colon	sgMsh6	38336061	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.078	179	0	0	NA	exonic	Olfr136	frameshift deletion	Olfr136:NM_146807:exon1:c.903delA:p.K303Nfs*2	17qB1	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.24	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3352T1	chr17	46966149	PW2017tail	colon	sgMsh6	46966149	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	110	0	0	NA	exonic	Ubr2	nonsynonymous SNV	"Ubr2:NM_001177374:exon21:c.C2401T:p.P801S,Ubr2:NM_146078:exon21:c.C2401T:p.P801S"	17qC	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.153846154	3	0.9267834	GGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr17	87986181	PW2017tail	colon	sgMsh6	87986185	GTCTA	-	Deletion	Strelka2;Vardict	2	0.2	50	0	0	NA	exonic	Msh6	frameshift deletion	Msh6:NM_010830:exon4:c.2363_2367del:p.L789Cfs*9	17qE4	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.615384615	NA	NA	CGT	frameshift	NA	NA	NA	-5
PW3352T1	chr17	87986182	PW2017tail	colon	sgMsh6	87986187	TCTAGA	-	Deletion	Strelka2;Vardict	2	0.1915	47	0	0	NA	exonic	Msh6	nonframeshift deletion	Msh6:NM_010830:exon4:c.2364_2369del:p.L789_D790del	17qE4	chr17-5975805-89046578	2	1	1	0.65	2	NON-ABERRANT	1	0.589230769	NA	NA	GTC	inframe	NA	NA	NA	-6
PW3352T1	chr17	90037195	PW2017tail	colon	sgMsh6	90037195	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.104	153	0	0	NA	exonic	Nrxn1	nonsynonymous SNV	"Nrxn1:NM_001346962:exon3:c.G302A:p.R101Q,Nrxn1:NM_001347419:exon3:c.G311A:p.R104Q,Nrxn1:NM_001346960:exon6:c.G1199A:p.R400Q,Nrxn1:NM_001346961:exon6:c.G1190A:p.R397Q,Nrxn1:NM_001346958:exon7:c.G1280A:p.R427Q,Nrxn1:NM_001346959:exon7:c.G1289A:p.R430Q,Nrxn1:NM_001346957:exon19:c.G4265A:p.R1422Q,Nrxn1:NM_177284:exon21:c.G4370A:p.R1457Q,Nrxn1:NM_020252:exon23:c.G4406A:p.R1469Q"	17qE5	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	TCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr18	34312286	PW2017tail	colon	sgMsh6	34312314	CAAGTCTGCCATCCCTTCACGTTAGGAAA	-	Deletion	Strelka2;Vardict	2	0.0667	120	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2057_2085del:p.S687Efs*5,Apc:NM_007462:exon16:c.2234_2262del:p.S746Efs*5,Apc:NM_001360980:exon17:c.2288_2316del:p.S764Efs*5"	18qB1	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.205230769	NA	NA	TCA	frameshift	NA	NA	NA	-29
PW3352T1	chr18	37449715	PW2017tail	colon	sgMsh6	37449715	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.071	330	0	0	NA	exonic	Pcdhb14	nonsynonymous SNV	Pcdhb14:NM_053139:exon1:c.C1873T:p.R625C	18qB3	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.218461538	2	0.9249984	GCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr18	37686606	PW2017tail	colon	sgMsh6	37686606	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.051	128	0	0	NA	exonic	Pcdhga4	nonsynonymous SNV	Pcdhga4:NM_033587:exon1:c.T1207G:p.L403V	18qB3	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.156923077	3	0.9417836	GTT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr18	62951908	PW2017tail	colon	sgMsh6	62951908	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.075	112	0	0	NA	exonic	Apcdd1	nonsynonymous SNV	Apcdd1:NM_133237:exon5:c.C1175T:p.A392V	18qE1	chr18-11882623-84965428	2	1	1	0.65	2	NON-ABERRANT	1	0.230769231	2	0.8338779	GCT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr18	90537125	PW2017tail	colon	sgMsh6	90537125	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.06	88	0	0	NA	exonic	Tmx3	nonsynonymous SNV	Tmx3:NM_198295:exon14:c.A965G:p.Y322C	18qE4	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	TAC	nonsynonymous	T	5	TTTTT	NA
PW3352T1	chr19	13454309	PW2017tail	colon	sgMsh6	13454309	A	G	SNV	Mutect2;MuSe;Vardict	3	0.099	431	0	0	NA	exonic	Olfr1472	synonymous SNV	Olfr1472:NM_146690:exon1:c.T207C:p.C69C	19qA	chr19-4352434-60859918	2	1	1	0.65	2	NON-ABERRANT	1	0.304615385	2	1.54E-09	CAC	synonymous	NA	NA	NA	NA
PW3352T1	chr2	10091841	PW2017tail	colon	sgMsh6	10091841	A	-	Deletion	Mutect2;Strelka2;Vardict	3	0.127	38	0	0	NA	exonic	Kin	frameshift deletion	Kin:NM_025280:exon5:c.500delA:p.T169Lfs*8	2qA1	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.390769231	NA	NA	GAA	frameshift	A	5	AAAAA	-1
PW3352T1	chr2	40637763	PW2017tail	colon	sgMsh6	40637763	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.078	180	0	0	NA	exonic	Lrp1b	nonsynonymous SNV	Lrp1b:NM_053011:exon85:c.T13085C:p.V4362A	2qB	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.24	2	0.9651578	TAC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr2	88423247	PW2017tail	colon	sgMsh6	88423247	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	296	0	0	NA	exonic	Olfr1181	synonymous SNV	Olfr1181:NM_001011816:exon1:c.T777C:p.P259P	2qD	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.390769231	2	1.00E-09	GAG	synonymous	NA	NA	NA	NA
PW3352T1	chr2	97630222	PW2017tail	colon	sgMsh6	97630222	G	A	SNV	Mutect2;Vardict	2	0.037	137	0	0	NA	exonic	Lrrc4c	nonsynonymous SNV	"Lrrc4c:NM_001289744:exon2:c.G1192A:p.A398T,Lrrc4c:NM_178725:exon3:c.G1192A:p.A398T,Lrrc4c:NM_001363049:exon4:c.G1192A:p.A398T,Lrrc4c:NM_001289743:exon7:c.G1192A:p.A398T,Lrrc4c:NM_001289742:exon8:c.G1192A:p.A398T,Lrrc4c:NM_001363048:exon8:c.G1192A:p.A398T,Lrrc4c:NM_001363047:exon9:c.G1192A:p.A398T"	2qE1	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.113846154	3	0.9971737	GGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr2	111484068	PW2017tail	colon	sgMsh6	111484068	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.115	227	0	0	NA	exonic	Olfr1289	nonsynonymous SNV	Olfr1289:NM_146404:exon1:c.C637T:p.R213C	2qE3	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.353846154	2	0.9999999	ACG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr2	164589314	PW2017tail	colon	sgMsh6	164589314	T	-	Deletion	Strelka2;Vardict	2	0.0706	85	0	0	NA	exonic	Eppin	frameshift deletion	Eppin:NM_029325:exon3:c.391delA:p.S131Afs*42	2qH3	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.217230769	NA	NA	CTT	frameshift	T	9	TTTTTTTTT	-1
PW3352T1	chr2	165116222	PW2017tail	colon	sgMsh6	165116222	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.042	101	0	0	NA	exonic	Cdh22	synonymous SNV	Cdh22:NM_174988:exon11:c.C1824T:p.C608C	2qH3	chr2-4930918-180717794	2	1	1	0.65	2	NON-ABERRANT	1	0.129230769	3	0.9715767	TGC	synonymous	NA	NA	NA	NA
PW3352T1	chr3	19966275	PW2017tail	colon	sgMsh6	19966275	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.13	96	0	0	NA	exonic	Cp	nonsynonymous SNV	"Cp:NM_001276248:exon3:c.G431A:p.R144Q,Cp:NM_001276250:exon3:c.G431A:p.R144Q,Cp:NM_001374677:exon3:c.G431A:p.R144Q,Cp:NM_007752:exon3:c.G431A:p.R144Q"	3qA2	chr3-15331914-153876532	2	2	0	0.65	2	NON-ABERRANT	1	0.4	2	0.9997652	CGG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr3	90174347	PW2017tail	colon	sgMsh6	90174347	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.064	100	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon22:c.C2985T:p.T995T	3qF1	chr3-15331914-153876532	2	2	0	0.65	2	NON-ABERRANT	1	0.196923077	3	0.5486492	CCG	synonymous	NA	NA	NA	NA
PW3352T1	chr3	96650424	PW2017tail	colon	sgMsh6	96650424	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.087	93	0	0	NA	exonic	Itga10	frameshift deletion	Itga10:NM_001302471:exon8:c.782delG:p.G263Dfs*9	3qF2.1	chr3-15331914-153876532	2	2	0	0.65	2	NON-ABERRANT	1	0.267692308	NA	NA	CGG	frameshift	G	5	GGGGG	-1
PW3352T1	chr4	52467902	PW2017tail	colon	sgMsh6	52467902	A	-	Deletion	Mutect2;Vardict	2	0.048	179	0	0	NA	exonic	Smc2	frameshift deletion	"Smc2:NM_001301412:exon17:c.2245delA:p.T751Pfs*8,Smc2:NM_008017:exon17:c.2245delA:p.T751Pfs*8"	4qB2	chr4-8828216-156200568	2	1	1	0.65	2	NON-ABERRANT	1	0.147692308	NA	NA	TAA	frameshift	A	5	AAAAA	-1
PW3352T1	chr4	81282717	PW2017tail	colon	sgMsh6	81282717	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.127	176	0	0	NA	exonic	Mpdz	nonsynonymous SNV	"Mpdz:NM_001305286:exon44:c.C5738T:p.A1913V,Mpdz:NM_010820:exon45:c.C5837T:p.A1946V,Mpdz:NM_001305284:exon46:c.C5879T:p.A1960V"	4qC3	chr4-8828216-156200568	2	1	1	0.65	2	NON-ABERRANT	1	0.390769231	2	0.9999998	GGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr4	123372442	PW2017tail	colon	sgMsh6	123372442	C	A	SNV	Mutect2;Vardict	2	0.057	77	0	0	NA	exonic	Macf1	nonsynonymous SNV	"Macf1:NM_001199137:exon81:c.G14281T:p.A4761S,Macf1:NM_001199136:exon86:c.G20362T:p.A6788S"	4qD2.2	chr4-8828216-156200568	2	1	1	0.65	2	NON-ABERRANT	1	0.175384615	3	0.7166677	GCC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr4	127355564	PW2017tail	colon	sgMsh6	127355564	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.09	81	0	0	NA	exonic	Gjb5	synonymous SNV	Gjb5:NM_010291:exon2:c.T786C:p.P262P	4qD2.2	chr4-8828216-156200568	2	1	1	0.65	2	NON-ABERRANT	1	0.276923077	2	0.9537594	GAG	synonymous	NA	NA	NA	NA
PW3352T1	chr5	8718973	PW2017tail	colon	sgMsh6	8718979	CCAAAGG	-	Deletion	Mutect2;Strelka2	2	0.116	92	0	0	NA	exonic	Abcb1a	frameshift deletion	Abcb1a:NM_011076:exon20:c.2200delG:p.V734Ffs*22	5qA1	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	TCC	frameshift	T	7	TTTTTTT	-7
PW3352T1	chr5	21399722	PW2017tail	colon	sgMsh6	21399722	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	104	0	0	NA	exonic	Ccdc146	synonymous SNV	Ccdc146:NM_029195:exon2:c.C117T:p.D39D	5qA3	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	1	0.384615385	2	0.9998814	CGT	synonymous	NA	NA	NA	NA
PW3352T1	chr5	44669396	PW2017tail	colon	sgMsh6	44669396	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	130	0	0	NA	exonic	Ldb2	nonsynonymous SNV	"Ldb2:NM_001077398:exon2:c.A196G:p.T66A,Ldb2:NM_001286348:exon2:c.A196G:p.T66A,Ldb2:NM_001347349:exon2:c.A196G:p.T66A,Ldb2:NM_001359070:exon2:c.A196G:p.T66A,Ldb2:NM_001359071:exon2:c.A196G:p.T66A,Ldb2:NM_010698:exon2:c.A196G:p.T66A"	5qB3	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	1	0.283076923	2	0.9943266	GTT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr5	65615410	PW2017tail	colon	sgMsh6	65615410	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	125	0	0	NA	exonic	Pds5a	synonymous SNV	Pds5a:NM_001081321:exon32:c.C3849T:p.N1283N	5qC3.1	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	1	0.153846154	3	0.9479813	CGT	synonymous	T	5	TTTTT	NA
PW3352T1	chr5	110668190	PW2017tail	colon	sgMsh6	110668190	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.109	71	0	0	NA	exonic	Ep400	nonsynonymous SNV	"Ep400:NM_173066:exon48:c.G8375A:p.G2792E,Ep400:NM_029337:exon49:c.G8483A:p.G2828E"	5qF	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	1	0.335384615	2	0.9908727	CCC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr5	115298765	PW2017tail	colon	sgMsh6	115298765	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.111	100	0	0	NA	exonic	Dynll1	synonymous SNV	Dynll1:NM_019682:exon3:c.A201G:p.T67T	5qF	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	1	0.341538462	2	0.9989447	GTG	synonymous	NA	NA	NA	NA
PW3352T1	chr5	120483599	PW2017tail	colon	sgMsh6	120483599	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.573	5	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-8955344-150491074	2	2	0	0.65	2	NON-ABERRANT	2	1	1	0.05442547	CGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr6	41355471	PW2017tail	colon	sgMsh6	41355471	T	C	SNV	Mutect2;Vardict	2	0.042	175	0	0	NA	exonic	Try10	synonymous SNV	Try10:NM_001038996:exon2:c.T60C:p.D20D	6qB1	chr6-12500903-148183977	2	1	1	0.65	2	NON-ABERRANT	1	0.129230769	3	0.99801	ATG	synonymous	GAT	11	GATGATGATGA	NA
PW3352T1	chr6	43280295	PW2017tail	colon	sgMsh6	43280295	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.101	130	0	0	NA	exonic	Arhgef5	nonsynonymous SNV	Arhgef5:NM_133674:exon7:c.G3779A:p.R1260H	6qB2.1	chr6-12500903-148183977	2	1	1	0.65	2	NON-ABERRANT	1	0.310769231	2	0.9990145	CGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr6	97186088	PW2017tail	colon	sgMsh6	97186088	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.069	182	0	0	NA	exonic	Uba3	nonsynonymous SNV	"Uba3:NM_001111106:exon13:c.C1022T:p.T341M,Uba3:NM_001301858:exon13:c.C983T:p.T328M,Uba3:NM_001301857:exon14:c.C1001T:p.T334M,Uba3:NM_001301859:exon14:c.C1064T:p.T355M,Uba3:NM_011666:exon14:c.C1064T:p.T355M"	6qD3	chr6-12500903-148183977	2	1	1	0.65	2	NON-ABERRANT	1	0.212307692	2	0.7108935	CGT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr7	10633683	PW2017tail	colon	sgMsh6	10633683	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.034	156	0	0	NA	exonic	Vmn1r70	nonsynonymous SNV	Vmn1r70:NM_134228:exon1:c.G97A:p.A33T	7qA1	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.104615385	3	0.9993892	CGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr7	11847571	PW2017tail	colon	sgMsh6	11847571	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.031	243	0	0	NA	exonic	Vmn1r74	nonsynonymous SNV	Vmn1r74:NM_134206:exon1:c.G797T:p.W266L	7qA1	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.095384615	3	0.9999969	TGG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr7	104472373	PW2017tail	colon	sgMsh6	104472373	T	-	Deletion	Strelka2;Vardict	2	0.095	179	0	0	NA	exonic	Trim30d	frameshift deletion	"Trim30d:NM_001167828:exon7:c.714delA:p.K238Nfs*9,Trim30d:NM_199146:exon8:c.1164delA:p.K388Nfs*9"	7qE3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.292307692	NA	NA	ATT	frameshift	T	9	TTTTTTTTT	-1
PW3352T1	chr7	105337101	PW2017tail	colon	sgMsh6	105337101	G	A	SNV	Mutect2;Vardict	2	0.03	155	0	0	NA	exonic	Olfr691	nonsynonymous SNV	Olfr691:NM_147061:exon1:c.C614T:p.P205L	7qE3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.092307692	3	0.999747	GGG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr7	128240104	PW2017tail	colon	sgMsh6	128240104	A	G	SNV	Mutect2;Vardict	2	0.075	53	0	0	NA	exonic	Armc5	nonsynonymous SNV	Armc5:NM_146205:exon3:c.A593G:p.E198G	7qF3	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.230769231	2	9.01E-06	GAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr7	141998678	PW2017tail	colon	sgMsh6	141998678	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.073	70	0	0	NA	exonic	Brsk2	nonsynonymous SNV	"Brsk2:NM_001009929:exon18:c.A1898G:p.Q633R,Brsk2:NM_001009930:exon18:c.A1898G:p.Q633R,Brsk2:NM_029426:exon18:c.A1898G:p.Q633R,Brsk2:NM_001276763:exon19:c.A1964G:p.Q655R"	7qF5	chr7-4554068-142893198	2	1	1	0.65	2	NON-ABERRANT	1	0.224615385	2	0.7002888	CAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr8	83929665	PW2017tail	colon	sgMsh6	83929665	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.043	124	0	0	NA	exonic	Adgrl1	nonsynonymous SNV	Adgrl1:NM_181039:exon5:c.C596T:p.T199M	8qC2	chr8-3748601-123087228	2	1	1	0.65	2	NON-ABERRANT	1	0.132307692	3	0.9849397	ACG	nonsynonymous	CAC	9	CACCACCAC	NA
PW3352T1	chr8	105381788	PW2017tail	colon	sgMsh6	105381788	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.092	125	0	0	NA	exonic	Plekhg4	synonymous SNV	"Plekhg4:NM_001081333:exon19:c.T3354C:p.G1118G,Plekhg4:NM_001364406:exon21:c.T3462C:p.G1154G"	8qD3	chr8-3748601-123087228	2	1	1	0.65	2	NON-ABERRANT	1	0.283076923	2	0.9931235	GTC	synonymous	NA	NA	NA	NA
PW3352T1	chr8	125090424	PW2017tail	colon	sgMsh6	125090424	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.125	215	0	0	NA	exonic	Disc1	nonsynonymous SNV	"Disc1:NM_174853:exon3:c.G1102A:p.D368N,Disc1:NM_174854:exon3:c.G1102A:p.D368N"	8qE2	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	GGA	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr9	26920663	PW2017tail	colon	sgMsh6	26920663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	63	0	0	NA	exonic	Gm1110	nonsynonymous SNV	Gm1110:NM_001281475:exon3:c.G191A:p.R64Q	9qA4	chr9-7282188-124108155	2	2	0	0.65	2	NON-ABERRANT	2	0.769230769	1	0.9998299	CCG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr9	38982853	PW2017tail	colon	sgMsh6	38982853	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.124	167	0	0	NA	exonic	Olfr934	nonsynonymous SNV	Olfr934:NM_146442:exon1:c.C190A:p.L64M	9qA5.1	chr9-7282188-124108155	2	2	0	0.65	2	NON-ABERRANT	1	0.381538462	2	0.9999995	AGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chr9	42359251	PW2017tail	colon	sgMsh6	42359251	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.036	117	0	0	NA	exonic	Tecta	nonsynonymous SNV	"Tecta:NM_001324548:exon12:c.A3760G:p.M1254V,Tecta:NM_009347:exon12:c.A3760G:p.M1254V,Tecta:NM_001378602:exon13:c.A3760G:p.M1254V"	9qA5.1	chr9-7282188-124108155	2	2	0	0.65	2	NON-ABERRANT	1	0.110769231	3	0.9943223	ATC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chrX	33313964	PW2017tail	colon	sgMsh6	33313964	A	G	SNV	Mutect2;Vardict	2	0.084	112	0	0	NA	exonic	Btbd35f12	nonsynonymous SNV	Btbd35f12:NM_001099333:exon1:c.A542G:p.Q181R	XqA3.1	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	CAG	nonsynonymous	NA	NA	NA	NA
PW3352T1	chrX	41402829	PW2017tail	colon	sgMsh6	41402829	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.086	63	0	0	NA	exonic	Gria3	frameshift deletion	"Gria3:NM_001281929:exon2:c.120delG:p.E41Sfs*23,Gria3:NM_001290451:exon2:c.120delG:p.E41Sfs*23,Gria3:NM_016886:exon2:c.120delG:p.E41Sfs*23,Gria3:NM_001358361:exon3:c.120delG:p.E41Sfs*23"	XqA4	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	AGG	frameshift	NA	NA	NA	-1
PW3352T1	chrX	69544670	PW2017tail	colon	sgMsh6	69544670	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.179	74	0	0	NA	exonic	Aff2	nonsynonymous SNV	Aff2:NM_008032:exon3:c.C442A:p.L148I	XqA7.2	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	TCT	nonsynonymous	NA	NA	NA	NA
PW3352T1	chrX	92119703	PW2017tail	colon	sgMsh6	92119703	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.075	73	0	0	NA	exonic	Mageb18	nonsynonymous SNV	Mageb18:NM_173783:exon5:c.C932T:p.A311V	XqC2	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	GGC	nonsynonymous	NA	NA	NA	NA
PW3352T1	chrX	139734201	PW2017tail	colon	sgMsh6	139734201	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.065	137	0	0	NA	exonic	Tbc1d8b	nonsynonymous SNV	Tbc1d8b:NM_001081499:exon12:c.C2081T:p.T694I	XqF1	NA	NA	NA	NA	0.65	2	NON-ABERRANT	NA	NA	NA	NA	ACA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr1	26683299	PW2017tail	colon	sgMsh6	26683299	A	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.077	168	0	0	NA	exonic	4931408C20Rik	synonymous SNV	4931408C20Rik:NM_001033764:exon2:c.T2799G:p.T933T	1qA5	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.285185185	2	0.9989901	AAG	synonymous	NA	NA	NA	NA
PW3357T1	chr1	53913328	PW2017tail	colon	sgMsh6	53913328	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	134	0	0	NA	exonic	Hecw2	synonymous SNV	Hecw2:NM_001001883:exon13:c.C2745T:p.S915S	1qC1.1	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.185185185	2	0.6257264	TGG	synonymous	NA	NA	NA	NA
PW3357T1	chr1	116454989	PW2017tail	colon	sgMsh6	116454995	GCAGAAA	-	Deletion	Mutect2;Strelka2	2	0.052	202	0	0	NA	exonic	Cntnap5a	nonframeshift deletion	"Cntnap5a:NM_001077425:exon19:c.2990_2992del:p.E997_I998delinsV,Cntnap5a:NM_001371013:exon19:c.2993_2995del:p.E998_I999delinsV"	1qE2.3	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.192592593	NA	NA	TGC	inframe	T	6	TTTTTT	-7
PW3357T1	chr1	156641675	PW2017tail	colon	sgMsh6	156641675	A	-	Deletion	Strelka2;Vardict	2	0.0845	71	0	0	NA	exonic	Abl2	frameshift deletion	"Abl2:NM_009595:exon12:c.2508delA:p.K838Nfs*26,Abl2:NM_001136104:exon13:c.2196delA:p.K734Nfs*26"	1qG3	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.312962963	NA	NA	CAA	frameshift	A	5	AAAAA	-1
PW3357T1	chr1	161060849	PW2017tail	colon	sgMsh6	161060849	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	96	0	0	NA	exonic	Dars2	nonsynonymous SNV	Dars2:NM_172644:exon6:c.C500T:p.A167V	1qH2.1	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.203703704	2	0.733387	CGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr1	164443212	PW2017tail	colon	sgMsh6	164443212	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.044	160	0	0	NA	exonic	Atp1b1	nonsynonymous SNV	Atp1b1:NM_009721:exon3:c.T365G:p.I122S	1qH2.2	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.162962963	3	0.6671507	AAT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr1	166641744	PW2017tail	colon	sgMsh6	166641744	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.075	198	0	0	NA	exonic	Gm4847	nonsynonymous SNV	Gm4847:NM_001164312:exon4:c.G350A:p.R117H	1qH2.3	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.277777778	2	0.9994969	GCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr1	192930715	PW2017tail	colon	sgMsh6	192930715	T	-	Deletion	Mutect2;Vardict	2	0.05	146	0	0	NA	exonic	Syt14	frameshift deletion	"Syt14:NM_001301370:exon6:c.927delA:p.K309Nfs*28,Syt14:NM_181546:exon6:c.927delA:p.K309Nfs*28"	1qH6	chr1-9545447-193352278	2	2	0	0.54	2	NON-ABERRANT	1	0.185185185	NA	NA	GTT	frameshift	T	5	TTTTT	-1
PW3357T1	chr10	76614494	PW2017tail	colon	sgMsh6	76614494	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.035	177	0	0	NA	exonic	Col6a2	nonsynonymous SNV	"Col6a2:NM_001347207:exon3:c.G602A:p.R201Q,Col6a2:NM_146007:exon3:c.G602A:p.R201Q"	10qC1	chr10-5218416-128943022	2	1	1	0.54	2	NON-ABERRANT	1	0.12962963	3	0.9504408	CCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr10	88777428	PW2017tail	colon	sgMsh6	88777428	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.045	200	0	0	NA	exonic	Utp20	synonymous SNV	Utp20:NM_175158:exon31:c.T3990C:p.S1330S	10qC1	chr10-5218416-128943022	2	1	1	0.54	2	NON-ABERRANT	1	0.166666667	3	0.640987	TAC	synonymous	NA	NA	NA	NA
PW3357T1	chr11	6324905	PW2017tail	colon	sgMsh6	6324905	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.039	273	0	0	NA	exonic	Ogdh	nonsynonymous SNV	"Ogdh:NM_001252282:exon5:c.G545A:p.R182Q,Ogdh:NM_001252283:exon5:c.G533A:p.R178Q,Ogdh:NM_001361902:exon5:c.G533A:p.R178Q,Ogdh:NM_001361903:exon5:c.G533A:p.R178Q"	11qA1	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.144444444	3	0.9535887	CGA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr11	49280915	PW2017tail	colon	sgMsh6	49280915	T	C	SNV	Mutect2;Vardict	2	0.018	436	0	0	NA	exonic	Olfr1393	nonsynonymous SNV	Olfr1393:NM_146471:exon1:c.T766C:p.Y256H	11qB1.2	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.066666667	3	2.92E-08	CTA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr11	55270185	PW2017tail	colon	sgMsh6	55270185	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.149	126	0	0	NA	exonic	Fat2	synonymous SNV	Fat2:NM_001029988:exon13:c.C9718T:p.L3240L	11qB1.3	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.551851852	1	0.9976451	AGC	synonymous	NA	NA	NA	NA
PW3357T1	chr11	60778696	PW2017tail	colon	sgMsh6	60778696	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	157	0	0	NA	exonic	Smcr8	synonymous SNV	"Smcr8:NM_001085440:exon1:c.T669G:p.G223G,Smcr8:NM_175491:exon1:c.T669G:p.G223G"	11qB2	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.159259259	3	0.7108017	GTT	synonymous	T	5	TTTTT	NA
PW3357T1	chr11	67188698	PW2017tail	colon	sgMsh6	67188698	G	A	SNV	Mutect2;Vardict	2	0.039	220	0	0	NA	exonic	Myh2	nonsynonymous SNV	Myh2:NM_001039545:exon24:c.G2980A:p.E994K	11qB3	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.144444444	3	0.9203491	CGA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr11	67219641	PW2017tail	colon	sgMsh6	67219641	C	A	SNV	Mutect2;Vardict	2	0.033	145	0	0	NA	exonic	Myh1	synonymous SNV	Myh1:NM_030679:exon32:c.C4377A:p.I1459I	11qB3	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.122222222	3	0.9442238	TCC	synonymous	NA	NA	NA	NA
PW3357T1	chr11	74868102	PW2017tail	colon	sgMsh6	74868102	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.055	114	0	0	NA	exonic	Sgsm2	nonsynonymous SNV	"Sgsm2:NM_001374688:exon6:c.C551T:p.T184M,Sgsm2:NM_197943:exon6:c.C551T:p.T184M"	11qB5	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.203703704	2	0.7707324	CGT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr11	94945580	PW2017tail	colon	sgMsh6	94945580	C	G	SNV	Mutect2;Strelka2;Vardict	3	0.057	90	0	0	NA	exonic	Col1a1	synonymous SNV	Col1a1:NM_007742:exon31:c.C2076G:p.P692P	11qD	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.211111111	2	0.7671974	CCG	synonymous	C	5	CCCCC	NA
PW3357T1	chr11	101101016	PW2017tail	colon	sgMsh6	101101016	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.063	149	0	0	NA	exonic	Retreg3	synonymous SNV	"Retreg3:NM_028933:exon5:c.G90A:p.L30L,Retreg3:NM_001361583:exon6:c.G633A:p.L211L,Retreg3:NM_026501:exon6:c.G633A:p.L211L"	11qD	chr11-3132249-120955476	2	1	1	0.54	2	NON-ABERRANT	1	0.233333333	2	0.9623739	ACA	synonymous	NA	NA	NA	NA
PW3357T1	chr12	31287543	PW2017tail	colon	sgMsh6	31287543	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.052	210	0	0	NA	exonic	Lamb1	synonymous SNV	Lamb1:NM_008482:exon9:c.G1128A:p.Q376Q	12qA2	chr12-8238637-118301289	2	1	1	0.54	2	NON-ABERRANT	1	0.192592593	2	0.8046809	AGT	synonymous	NA	NA	NA	NA
PW3357T1	chr12	73972582	PW2017tail	colon	sgMsh6	73972582	T	-	Deletion	Mutect2;Vardict	2	0.041	217	0	0	NA	exonic	Snapc1	frameshift deletion	Snapc1:NM_178392:exon7:c.865delT:p.S290Qfs*69	12qC3	chr12-8238637-118301289	2	1	1	0.54	2	NON-ABERRANT	1	0.151851852	NA	NA	CTT	frameshift	NA	NA	NA	-1
PW3357T1	chr13	3644912	PW2017tail	colon	sgMsh6	3644919	CAAGGGAG	-	Deletion	Mutect2;Strelka2	2	0.064	169	0	0	NA	exonic	Asb13	frameshift deletion	"Asb13:NM_001267724:exon2:c.44_47del:p.G15Vfs*4,Asb13:NM_178283:exon4:c.383_386del:p.G128Vfs*4"	13qA1	chr13-3559926-114856083	2	1	1	0.54	2	NON-ABERRANT	1	0.237037037	NA	NA	TCA	frameshift	T	6	TTTTTT	-8
PW3357T1	chr13	21287393	PW2017tail	colon	sgMsh6	21287393	C	T	SNV	Mutect2;Vardict	2	0.053	78	0	0	NA	exonic	Gpx5	synonymous SNV	Gpx5:NM_010343:exon5:c.G639A:p.A213A	13qA3.1	chr13-3559926-114856083	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	2	6.90E-09	ACG	synonymous	NA	NA	NA	NA
PW3357T1	chr13	23184191	PW2017tail	colon	sgMsh6	23184191	-	C	Insertion	Mutect2;Vardict	2	0.027	440	0	0	NA	exonic	Vmn1r220	frameshift insertion	Vmn1r220:NM_134237:exon1:c.333_334insG:p.R112Efs*38	13qA3.1	chr13-3559926-114856083	2	1	1	0.54	2	NON-ABERRANT	1	0.1	NA	NA	CTG	frameshift	NA	NA	NA	1
PW3357T1	chr14	52279849	PW2017tail	colon	sgMsh6	52279849	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.061	81	0	0	NA	exonic	Tox4	nonsynonymous SNV	Tox4:NM_023434:exon3:c.C35A:p.T12K	14qC2	chr14-3072210-123348696	2	2	0	0.54	2	NON-ABERRANT	1	0.225925926	2	0.8195169	ACG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr14	70616087	PW2017tail	colon	sgMsh6	70616087	G	-	Deletion	Mutect2;Strelka2;Vardict	3	0.128	72	0	0	NA	exonic	Dmtn	frameshift deletion	"Dmtn:NM_001252666:exon3:c.206delC:p.P69Hfs*93,Dmtn:NM_001252664:exon4:c.206delC:p.P69Hfs*93,Dmtn:NM_001252665:exon4:c.206delC:p.P69Hfs*93,Dmtn:NM_001360028:exon4:c.206delC:p.P69Hfs*93,Dmtn:NM_001360029:exon4:c.206delC:p.P69Hfs*93,Dmtn:NM_001252662:exon5:c.281delC:p.P94Hfs*93,Dmtn:NM_001252663:exon5:c.281delC:p.P94Hfs*93,Dmtn:NM_001360024:exon5:c.281delC:p.P94Hfs*93,Dmtn:NM_001360025:exon5:c.281delC:p.P94Hfs*93,Dmtn:NM_001360027:exon5:c.281delC:p.P94Hfs*93,Dmtn:NM_001360030:exon5:c.206delC:p.P69Hfs*93,Dmtn:NM_001360026:exon6:c.281delC:p.P94Hfs*93,Dmtn:NM_013514:exon6:c.281delC:p.P94Hfs*93"	14qD2	chr14-3072210-123348696	2	2	0	0.54	2	NON-ABERRANT	1	0.474074074	NA	NA	TGG	frameshift	G	5	GGGGG	-1
PW3357T1	chr15	83336720	PW2017tail	colon	sgMsh6	83336720	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.066	67	0	0	NA	exonic	Arfgap3	synonymous SNV	"Arfgap3:NM_001357756:exon3:c.A195G:p.T65T,Arfgap3:NM_001357757:exon3:c.A195G:p.T65T,Arfgap3:NM_025445:exon3:c.A195G:p.T65T"	15qE1	chr15-5242164-102153785	2	1	1	0.54	2	NON-ABERRANT	1	0.244444444	2	0.8458276	CTG	synonymous	NA	NA	NA	NA
PW3357T1	chr15	90952763	PW2017tail	colon	sgMsh6	90952792	TTGTTACAGGGGAAGGCTCTGGCACTTTTT	-	Deletion	Mutect2;Strelka2;Vardict	3	0.52	67	0	0	NA	exonic	Kif21a	nonframeshift deletion	"Kif21a:NM_001358050:exon27:c.3665_3694del:p.K1222_T1231del,Kif21a:NM_001109040:exon28:c.3704_3733del:p.K1235_T1244del"	15qE3	chr15-5242164-102153785	2	1	1	0.54	2	NON-ABERRANT	1	1	NA	NA	CTT	inframe	NA	NA	NA	-30
PW3357T1	chr15	91699960	PW2017tail	colon	sgMsh6	91699960	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.036	208	0	0	NA	exonic	Lrrk2	nonsynonymous SNV	Lrrk2:NM_025730:exon8:c.G922A:p.A308T	15qE3	chr15-5242164-102153785	2	1	1	0.54	2	NON-ABERRANT	1	0.133333333	3	0.9598789	CGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr16	10511964	PW2017tail	colon	sgMsh6	10511964	G	A	SNV	Mutect2;Vardict	2	0.065	63	0	0	NA	exonic	Ciita	nonsynonymous SNV	"Ciita:NM_001243760:exon10:c.G2339A:p.R780H,Ciita:NM_001243761:exon10:c.G2102A:p.R701H,Ciita:NM_001302618:exon10:c.G2342A:p.R781H,Ciita:NM_007575:exon10:c.G2111A:p.R704H,Ciita:NM_001302619:exon11:c.G2039A:p.R680H"	16qA1	chr16-3948854-96819699	2	2	0	0.54	2	NON-ABERRANT	1	0.240740741	2	0.8191385	CGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr16	27417327	PW2017tail	colon	sgMsh6	27417327	G	A	SNV	Mutect2;Vardict	2	0.046	103	0	0	NA	exonic	Ccdc50	nonsynonymous SNV	"Ccdc50:NM_001025615:exon5:c.G410A:p.G137D,Ccdc50:NM_026202:exon5:c.G410A:p.G137D"	16qB2	chr16-3948854-96819699	2	2	0	0.54	2	NON-ABERRANT	1	0.17037037	3	0.5461032	GGC	nonsynonymous	G	5	GGGGG	NA
PW3357T1	chr17	18167345	PW2017tail	colon	sgMsh6	18167345	C	T	SNV	Mutect2;Vardict	2	0.037	259	0	0	NA	exonic	Vmn2r92	nonsynonymous SNV	"Vmn2r92:NM_001104541:exon3:c.C611T:p.A204V,Vmn2r92:NM_001385105:exon3:c.C611T:p.A204V"	17qA3.2	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.137037037	3	0.9729594	GCC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr17	19393758	PW2017tail	colon	sgMsh6	19393758	A	G	SNV	Mutect2;MuSe;Vardict	3	0.06	410	0	0	NA	exonic	Vmn2r99	nonsynonymous SNV	Vmn2r99:NM_001104551:exon6:c.A1739G:p.D580G	17qA3.2	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.222222222	2	0.9993448	GAC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr17	20469089	PW2017tail	colon	sgMsh6	20469089	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.039	234	0	0	NA	exonic	Vmn2r108	nonsynonymous SNV	Vmn2r108:NM_001104570:exon5:c.T1603C:p.Y535H	17qA3.2	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.144444444	3	0.9308064	TAG	nonsynonymous	AGC	8	AGCAGCAG	NA
PW3357T1	chr17	33604633	PW2017tail	colon	sgMsh6	33604633	G	T	SNV	Mutect2;Vardict	2	0.039	111	0	0	NA	exonic	Myo1f	nonsynonymous SNV	Myo1f:NM_053214:exon27:c.G3134T:p.R1045M	17qB1	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.144444444	3	0.7796009	AGG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr17	37563734	PW2017tail	colon	sgMsh6	37563734	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.02	436	0	0	NA	exonic	Olfr112	synonymous SNV	Olfr112:NM_001013575:exon5:c.C576T:p.D192D	17qB1	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.074074074	3	0.9999999	GGT	synonymous	NA	NA	NA	NA
PW3357T1	chr17	87986028	PW2017tail	colon	sgMsh6	87986048	TAAACAACCTGGAGATTTTCC	-	Deletion	Mutect2;Strelka2;Vardict	3	0.128	148	0	0	NA	exonic	Msh6	nonframeshift deletion	Msh6:NM_010830:exon4:c.2210_2230del:p.N739_N745del	17qE4	chr17-3505882-87986181	2	2	0	0.54	2	NON-ABERRANT	1	0.474074074	NA	NA	TTA	inframe	NA	NA	NA	-21
PW3357T1	chr17	87986165	PW2017tail	colon	sgMsh6	87986199	TCTGCCATCAGTGACCGTCTAGATGCGGTGGAAGA	-	Deletion	Strelka2;Vardict	2	0.1867	75	0	0	NA	exonic	Msh6	frameshift deletion	Msh6:NM_010830:exon4:c.2347_2381del:p.A784Dfs*4	17qE4	NA	NA	NA	NA	0.54	2	NON-ABERRANT	NA	NA	NA	NA	TTC	frameshift	NA	NA	NA	-35
PW3357T1	chr17	87986176	PW2017tail	colon	sgMsh6	87986201	TGACCGTCTAGATGCGGTGGAAGATC	-	Deletion	Strelka2;Vardict	2	0.1739	69	0	0	NA	exonic	Msh6	frameshift deletion	Msh6:NM_010830:exon4:c.2358_2383del:p.R788Gfs*3	17qE4	NA	NA	NA	NA	0.54	2	NON-ABERRANT	NA	NA	NA	NA	GTG	frameshift	NA	NA	NA	-26
PW3357T1	chr18	34312303	PW2017tail	colon	sgMsh6	34312304	CA	-	Deletion	Strelka2;Vardict	2	0.1704	135	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.2074_2075del:p.H692Rfs*1,Apc:NM_007462:exon16:c.2251_2252del:p.H751Rfs*1,Apc:NM_001360980:exon17:c.2305_2306del:p.H769Rfs*1"	18qB1	chr18-6784725-80029339	2	1	1	0.54	2	NON-ABERRANT	1	0.631111111	NA	NA	TCA	frameshift	NA	NA	NA	-2
PW3357T1	chr18	37486711	PW2017tail	colon	sgMsh6	37486711	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.152	239	0	0	NA	exonic	Pcdhb17	nonsynonymous SNV	Pcdhb17:NM_053142:exon1:c.C1553T:p.A518V	18qB3	chr18-6784725-80029339	2	1	1	0.54	2	NON-ABERRANT	1	0.562962963	1	0.9999996	GCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr18	52898273	PW2017tail	colon	sgMsh6	52898273	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.091	113	0	0	NA	exonic	Sncaip	nonsynonymous SNV	"Sncaip:NM_001199151:exon8:c.A1573G:p.T525A,Sncaip:NM_001199153:exon8:c.A1573G:p.T525A,Sncaip:NM_001199154:exon8:c.A1573G:p.T525A,Sncaip:NM_026408:exon8:c.A1573G:p.T525A"	18qD1	chr18-6784725-80029339	2	1	1	0.54	2	NON-ABERRANT	1	0.337037037	2	0.9988815	GAC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr19	12862546	PW2017tail	colon	sgMsh6	12862546	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.082	167	0	0	NA	exonic	Olfr1444	nonsynonymous SNV	Olfr1444:NM_146702:exon1:c.T770C:p.I257T	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.303703704	2	0.9996659	ATC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr19	13234930	PW2017tail	colon	sgMsh6	13234930	T	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.086	108	0	0	NA	exonic	Olfr1463	synonymous SNV	Olfr1463:NM_001011840:exon1:c.T679C:p.L227L	19qA	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.318518519	2	0.9968262	CTT	synonymous	NA	NA	NA	NA
PW3357T1	chr19	44139705	PW2017tail	colon	sgMsh6	44139705	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.021	269	0	0	NA	exonic	Bloc1s2	nonsynonymous SNV	Bloc1s2:NM_028607:exon5:c.T409C:p.Y137H	19qC3	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.077777778	3	0.9999348	TAC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr19	58675162	PW2017tail	colon	sgMsh6	58675162	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.063	103	0	0	NA	exonic	Pnlip	nonsynonymous SNV	Pnlip:NM_026925:exon6:c.A568G:p.T190A	19qD2	chr19-5706645-59060755	2	1	1	0.54	2	NON-ABERRANT	1	0.233333333	2	0.09769996	CAC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	24293236	PW2017tail	colon	sgMsh6	24293236	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.06	79	0	0	NA	exonic	Il1f10	nonsynonymous SNV	Il1f10:NM_153077:exon3:c.G191T:p.G64V	2qA3	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.222222222	2	0.7966761	GGA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	40597054	PW2017tail	colon	sgMsh6	40597054	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.05	112	0	0	NA	exonic	Lrp1b	synonymous SNV	Lrp1b:NM_053011:exon91:c.A13680G:p.P4560P	2qB	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.185185185	2	0.6034953	CTG	synonymous	NA	NA	NA	NA
PW3357T1	chr2	48898564	PW2017tail	colon	sgMsh6	48898564	A	-	Deletion	Strelka2;Vardict	2	0.0616	146	0	0	NA	exonic	Acvr2a	frameshift deletion	Acvr2a:NM_007396:exon10:c.1303delA:p.K437Rfs*4	2qC1.1	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.228148148	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3357T1	chr2	82977443	PW2017tail	colon	sgMsh6	82977443	A	-	Deletion	Strelka2;Vardict	2	0.0577	104	0	0	NA	exonic	Fsip2	frameshift deletion	Fsip2:NM_001370266:exon16:c.4099delA:p.N1369Ifs*62	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.213703704	NA	NA	TAA	frameshift	A	8	AAAAAAAA	-1
PW3357T1	chr2	85059300	PW2017tail	colon	sgMsh6	85059300	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.445	64	0	0	NA	exonic	Tnks1bp1	nonsynonymous SNV	Tnks1bp1:NM_001081260:exon5:c.C1970T:p.A657V	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.824074074	1	0.9999999	GCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	85841354	PW2017tail	colon	sgMsh6	85841354	G	A	SNV	Mutect2;Vardict	2	0.032	168	0	0	NA	exonic	Olfr1019	synonymous SNV	Olfr1019:NM_147015:exon1:c.C436T:p.L146L	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.118518519	3	0.9706767	AGC	synonymous	NA	NA	NA	NA
PW3357T1	chr2	86356007	PW2017tail	colon	sgMsh6	86356007	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.073	213	0	0	NA	exonic	Olfr1056	nonsynonymous SNV	Olfr1056:NM_147018:exon1:c.C374T:p.A125V	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.27037037	2	0.9994938	GGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	87489748	PW2017tail	colon	sgMsh6	87489748	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.069	119	0	0	NA	exonic	Pramel7	synonymous SNV	Pramel7:NM_178250:exon3:c.C1200T:p.R400R	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.255555556	2	0.9723276	TGC	synonymous	NA	NA	NA	NA
PW3357T1	chr2	88025130	PW2017tail	colon	sgMsh6	88025130	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.059	198	0	0	NA	exonic	Olfr1161	nonsynonymous SNV	Olfr1161:NM_146848:exon1:c.C407T:p.A136V	2qD	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.218518519	2	0.9622263	GCC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	89418168	PW2017tail	colon	sgMsh6	89418168	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.04	156	0	0	NA	exonic	Olfr1239	nonsynonymous SNV	Olfr1239:NM_146970:exon1:c.G244T:p.D82Y	2qE1	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.148148148	3	0.8231035	TCT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr2	152507827	PW2017tail	colon	sgMsh6	152507827	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.048	226	0	0	NA	exonic	Defb26	nonsynonymous SNV	Defb26:NM_001039120:exon2:c.C532T:p.P178S	2qG3	chr2-4992200-180281766	2	1	1	0.54	2	NON-ABERRANT	1	0.177777778	2	0.5707486	GGT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr3	10347218	PW2017tail	colon	sgMsh6	10347218	A	-	Deletion	Strelka2;Vardict	2	0.1842	38	0	0	NA	exonic	Zfand1	frameshift deletion	Zfand1:NM_001331014:exon3:c.16delT:p.C6Vfs*3	3qA1	chr3-10347217-151761283	2	2	0	0.54	2	NON-ABERRANT	1	0.682222222	NA	NA	CAA	frameshift	A	12	AAAAAAAAAAAA	-1
PW3357T1	chr3	90181954	PW2017tail	colon	sgMsh6	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.976	44	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-10347217-151761283	2	2	0	0.54	2	NON-ABERRANT	2	1	1	0.9999999	CGG	synonymous	NA	NA	NA	NA
PW3357T1	chr3	92022744	PW2017tail	colon	sgMsh6	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.984	62	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-10347217-151761283	2	2	0	0.54	2	NON-ABERRANT	2	1	1	1.04E-09	AGG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr4	12146364	PW2017tail	colon	sgMsh6	12146364	T	-	Deletion	Mutect2;Strelka2;Vardict	3	0.157	202	0	0	NA	exonic	Rbm12b1	frameshift deletion	Rbm12b1:NM_028226:exon3:c.2335delT:p.H781Mfs*19	4qA1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.581481481	NA	NA	CTT	frameshift	T	5	TTTTT	-1
PW3357T1	chr4	46396316	PW2017tail	colon	sgMsh6	46396316	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.062	159	0	0	NA	exonic	Hemgn	nonsynonymous SNV	Hemgn:NM_053149:exon3:c.G919A:p.A307T	4qB1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.22962963	2	0.9624748	GCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr4	65176237	PW2017tail	colon	sgMsh6	65176237	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.03	178	0	0	NA	exonic	Pappa	nonsynonymous SNV	Pappa:NM_021362:exon3:c.A1498C:p.N500H	4qC1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.111111111	3	0.9851391	GAA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr4	141972917	PW2017tail	colon	sgMsh6	141972917	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	147	0	0	NA	exonic	Fhad1	nonsynonymous SNV	Fhad1:NM_177868:exon7:c.A1021G:p.M341V	4qE1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.114814815	3	0.9634398	ATC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr4	144273209	PW2017tail	colon	sgMsh6	144273209	G	A	SNV	Mutect2;MuSe;Vardict	3	0.054	304	0	0	NA	exonic	Pramel5	nonsynonymous SNV	Pramel5:NM_001085418:exon3:c.C307T:p.L103F	4qE1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.2	2	0.948416	AGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr4	146536820	PW2017tail	colon	sgMsh6	146536820	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.018	527	0	0	NA	exonic	Zfp981	synonymous SNV	"Zfp981:NM_001243139:exon4:c.A201G:p.Q67Q,Zfp981:NM_001243138:exon5:c.A201G:p.Q67Q"	4qE1	chr4-8828216-156200568	2	1	1	0.54	2	NON-ABERRANT	1	0.066666667	3	1.76E-09	AAG	synonymous	NA	NA	NA	NA
PW3357T1	chr5	22106101	PW2017tail	colon	sgMsh6	22106101	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.055	92	0	0	NA	exonic	Reln	synonymous SNV	Reln:NM_001310464:exon9:c.A813G:p.S271S	5qA3	chr5-3673201-150478141	2	2	0	0.54	2	NON-ABERRANT	1	0.203703704	2	0.7245816	CTG	synonymous	NA	NA	NA	NA
PW3357T1	chr5	105274308	PW2017tail	colon	sgMsh6	105274308	T	C	SNV	Mutect2;Vardict	2	0.051	134	0	0	NA	exonic	Gbp6	nonsynonymous SNV	Gbp6:NM_194336:exon10:c.A1529G:p.E510G	5qE5	chr5-3673201-150478141	2	2	0	0.54	2	NON-ABERRANT	1	0.188888889	2	0.6677894	CTC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr5	120519663	PW2017tail	colon	sgMsh6	120519663	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.458	75	0	0	NA	exonic	Slc8b1	nonsynonymous SNV	"Slc8b1:NM_001177594:exon3:c.C190T:p.R64C,Slc8b1:NM_001177595:exon3:c.C190T:p.R64C,Slc8b1:NM_133221:exon3:c.C190T:p.R64C"	5qF	chr5-3673201-150478141	2	2	0	0.54	2	NON-ABERRANT	2	0.848148148	1	2.38E-09	TCG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr6	43273584	PW2017tail	colon	sgMsh6	43273584	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.052	100	0	0	NA	exonic	Arhgef5	nonsynonymous SNV	Arhgef5:NM_133674:exon2:c.T1268C:p.F423S	6qB2.1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.192592593	2	0.6556314	TTC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr6	86946909	PW2017tail	colon	sgMsh6	86946909	G	-	Deletion	Mutect2;Vardict	2	0.051	156	0	0	NA	exonic	Aak1	frameshift deletion	"Aak1:NM_001040106:exon7:c.787delG:p.E264Rfs*73,Aak1:NM_001378654:exon7:c.787delG:p.E264Rfs*73,Aak1:NM_001378655:exon7:c.787delG:p.E264Rfs*73,Aak1:NM_177762:exon7:c.787delG:p.E264Rfs*73,Aak1:NM_001378652:exon8:c.787delG:p.E264Rfs*73"	6qD1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.188888889	NA	NA	TGG	frameshift	NA	NA	NA	-1
PW3357T1	chr6	103729288	PW2017tail	colon	sgMsh6	103729288	G	A	SNV	Mutect2;Vardict	2	0.039	117	0	0	NA	exonic	Chl1	nonsynonymous SNV	Chl1:NM_007697:exon27:c.G3583A:p.V1195I	6qE1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.144444444	3	0.7905929	CGT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr6	114686186	PW2017tail	colon	sgMsh6	114686186	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.044	178	0	0	NA	exonic	Atg7	nonsynonymous SNV	"Atg7:NM_001379130:exon7:c.C681A:p.H227Q,Atg7:NM_028835:exon7:c.C633A:p.H211Q,Atg7:NM_001253717:exon8:c.C762A:p.H254Q,Atg7:NM_001253718:exon8:c.C633A:p.H211Q"	6qE3	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.162962963	3	0.6828804	ACT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr6	125081718	PW2017tail	colon	sgMsh6	125081718	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.064	115	0	0	NA	exonic	Lpar5	nonsynonymous SNV	"Lpar5:NM_001163268:exon2:c.A365G:p.D122G,Lpar5:NM_001163269:exon2:c.A365G:p.D122G"	6qF2	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.237037037	2	0.9338216	GAC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr6	125170211	PW2017tail	colon	sgMsh6	125170211	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.071	92	0	0	NA	exonic	Ncapd2	nonsynonymous SNV	Ncapd2:NM_146171:exon28:c.G3546T:p.Q1182H	6qF2	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.262962963	2	0.9521934	GCT	nonsynonymous	AGGAG	10	AGGAGAGGAG	NA
PW3357T1	chr6	132657839	PW2017tail	colon	sgMsh6	132657847	TGCTGACTG	-	Deletion	Mutect2;Strelka2	2	0.117	117	0	0	NA	exonic	Tas2r120	stoploss	Tas2r120:NM_207023:exon1:c.883_888del:p.C295_*296del	6qG1	chr6-3994124-145865145	2	1	1	0.54	2	NON-ABERRANT	1	0.433333333	NA	NA	ATG	nonsynonymous	AGATG	10	AGATGAGATG	-9
PW3357T1	chr7	6098980	PW2017tail	colon	sgMsh6	6098980	C	T	SNV	Mutect2;Vardict	2	0.023	195	0	0	NA	exonic	Nlrp4c	synonymous SNV	Nlrp4c:NM_031389:exon8:c.C2664T:p.N888N	7qA1	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.085185185	3	0.9984473	ACT	synonymous	NA	NA	NA	NA
PW3357T1	chr7	45643258	PW2017tail	colon	sgMsh6	45643258	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.056	122	0	0	NA	exonic	Mamstr	synonymous SNV	Mamstr:NM_172418:exon6:c.A441G:p.G147G	7qB3	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.207407407	2	0.8129618	GAG	synonymous	NA	NA	NA	NA
PW3357T1	chr7	86663740	PW2017tail	colon	sgMsh6	86663740	A	T	SNV	Mutect2;Vardict	2	0.018	341	0	0	NA	exonic	Olfr293	nonsynonymous SNV	Olfr293:NM_001011752:exon1:c.A77T:p.E26V	7qD3	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.066666667	3	0.9999988	GAA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr7	101388017	PW2017tail	colon	sgMsh6	101388017	A	C	SNV	Mutect2;Strelka2;Vardict	3	0.076	96	0	0	NA	exonic	Arap1	nonsynonymous SNV	"Arap1:NM_027180:exon6:c.A506C:p.Q169P,Arap1:NM_001040112:exon7:c.A506C:p.Q169P,Arap1:NM_001040111:exon10:c.A1250C:p.Q417P"	7qE2	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.281481481	2	0.9777798	CAG	nonsynonymous	GCAG	8	GCAGGCAG	NA
PW3357T1	chr7	104925060	PW2017tail	colon	sgMsh6	104925060	C	T	SNV	Mutect2;Vardict	2	0.031	323	0	0	NA	exonic	Olfr668	nonsynonymous SNV	Olfr668:NM_147059:exon1:c.G703A:p.A235T	7qE3	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.114814815	3	0.9991913	GCA	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr7	105740251	PW2017tail	colon	sgMsh6	105740251	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.04	160	0	0	NA	exonic	Ilk	nonsynonymous SNV	"Ilk:NM_001161724:exon3:c.T164C:p.M55T,Ilk:NM_010562:exon3:c.T164C:p.M55T"	7qE3	chr7-3841421-142893198	2	2	0	0.54	2	NON-ABERRANT	1	0.148148148	3	0.8285602	ATG	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr8	70452600	PW2017tail	colon	sgMsh6	70452600	G	A	SNV	Mutect2;Vardict	2	0.081	50	0	0	NA	exonic	Klhl26	nonsynonymous SNV	"Klhl26:NM_001122830:exon2:c.C476T:p.A159V,Klhl26:NM_178771:exon3:c.C659T:p.A220V,Klhl26:NM_001364258:exon4:c.C416T:p.A139V"	8qB3.3	chr8-9876597-126965210	2	1	1	0.54	2	NON-ABERRANT	1	0.3	2	0.09218024	AGC	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr9	25483158	PW2017tail	colon	sgMsh6	25483158	G	A	SNV	Mutect2;Vardict	2	0.053	80	0	0	NA	exonic	Eepd1	synonymous SNV	Eepd1:NM_026189:exon2:c.G717A:p.T239T	9qA4	chr9-3347922-124029944	2	1	1	0.54	2	NON-ABERRANT	1	0.196296296	2	0.6487508	CGC	synonymous	NA	NA	NA	NA
PW3357T1	chr9	39597942	PW2017tail	colon	sgMsh6	39597942	T	G	SNV	Mutect2;Strelka2;Vardict	3	0.044	253	0	0	NA	exonic	AW551984	nonsynonymous SNV	"AW551984:NM_001199556:exon8:c.A902C:p.K301T,AW551984:NM_001359951:exon8:c.A902C:p.K301T,AW551984:NM_178737:exon8:c.A902C:p.K301T"	9qA5.1	chr9-3347922-124029944	2	1	1	0.54	2	NON-ABERRANT	1	0.162962963	3	0.7438071	CTT	nonsynonymous	NA	NA	NA	NA
PW3357T1	chr9	66833215	PW2017tail	colon	sgMsh6	66833215	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.038	183	0	0	NA	exonic	Aph1c	synonymous SNV	Aph1c:NM_026674:exon2:c.G228A:p.A76A	9qC	chr9-3347922-124029944	2	1	1	0.54	2	NON-ABERRANT	1	0.140740741	3	0.09137701	ACG	synonymous	NA	NA	NA	NA
PW3357T1	chr9	73540275	PW2017tail	colon	sgMsh6	73540275	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.078	75	0	0	NA	exonic	Unc13c	nonsynonymous SNV	Unc13c:NM_001081153:exon25:c.C5642T:p.A1881V	9qD	chr9-3347922-124029944	2	1	1	0.54	2	NON-ABERRANT	1	0.288888889	2	0.9589089	TGC	nonsynonymous	CATC	8	CATCCATC	NA
PW3357T1	chr9	110986903	PW2017tail	colon	sgMsh6	110986903	G	A	SNV	Mutect2;Vardict	2	0.026	260	0	0	NA	exonic	Rtp3	synonymous SNV	Rtp3:NM_153100:exon2:c.C579T:p.P193P	9qF2	chr9-3347922-124029944	2	1	1	0.54	2	NON-ABERRANT	1	0.096296296	3	0.9994634	TGG	synonymous	NA	NA	NA	NA
PW3357T1	chrX	43591189	PW2017tail	colon	sgMsh6	43591189	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.078	115	0	0	NA	exonic	Tex13c1	synonymous SNV	Tex13c1:NM_001195271:exon1:c.C30T:p.S10S	XqA4	chrX-7946841-169987429	2	2	0	0.54	2	NON-ABERRANT	1	0.288888889	NA	NA	GCG	synonymous	NA	NA	NA	NA
PW3362T1	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.35	33	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-6233869-193325342	2	2	0	0.59	1.999974038	NON-ABERRANT	1	1	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW3362T1	chr1	160110426	PW2017tail	colon	sgMsh3	160110426	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.088	70	0	0	NA	exonic	Tnn	nonsynonymous SNV	Tnn:NM_177839:exon15:c.A3520G:p.I1174V	1qH2.1	chr1-6233869-193325342	2	2	0	0.59	1.999974038	NON-ABERRANT	1	0.298301212	NA	NA	ATG	nonsynonymous	NA	NA	NA	NA
PW3362T1	chr13	92274799	PW2017tail	colon	sgMsh3	92274799	-	T	Insertion	Strelka2;Vardict	2	0.2766	47	0	0	NA	exonic	Msh3	frameshift insertion	"Msh3:NM_001311120:exon14:c.1888dupA:p.I630Nfs*5,Msh3:NM_010829:exon14:c.1888dupA:p.I630Nfs*5"	13qC3	chr13-4136889-119495179	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.937614947	NA	NA	GAT	frameshift	NA	NA	NA	1
PW3362T1	chr16	88562985	PW2017tail	colon	sgMsh3	88562985	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.051	107	0	0	NA	exonic	Cldn8	synonymous SNV	Cldn8:NM_018778:exon1:c.C51T:p.G17G	16qC3.3	chr16-5094672-95410918	2	2	0	0.59	1.999974038	NON-ABERRANT	1	0.172879112	NA	NA	TGC	synonymous	NA	NA	NA	NA
PW3362T1	chr18	34312304	PW2017tail	colon	sgMsh3	34312304	-	C	Insertion	Strelka2;Vardict	2	0.23	77	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-10104325-80029339	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.779650896	NA	NA	CAC	frameshift	NA	NA	NA	1
PW3362T1	chr2	88274867	PW2017tail	colon	sgMsh3	88274867	-	A	Insertion	Mutect2;Strelka2;Vardict	3	0.159	289	0	0	NA	exonic	Olfr1173	frameshift insertion	Olfr1173:NM_207566:exon1:c.180dupT:p.L61Sfs*12	2qD	chr2-4992200-180281766	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.538976054	NA	NA	AGA	frameshift	A	5	AAAAA	1
PW3362T1	chr3	36050618	PW2017tail	colon	sgMsh3	36050618	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.127	39	0	0	NA	exonic	Ccdc144b	synonymous SNV	Ccdc144b:NM_178418:exon2:c.C93T:p.L31L	3qB	chr3-15331914-159911278	2	2	0	0.59	1.999974038	NON-ABERRANT	1	0.430502886	NA	NA	TGA	synonymous	NA	NA	NA	NA
PW3362T1	chr3	64259862	PW2017tail	colon	sgMsh3	64259862	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	203	0	0	NA	exonic	Vmn2r3	nonsynonymous SNV	Vmn2r3:NM_001384949:exon7:c.T1829C:p.F610S	3qE1	chr3-15331914-159911278	2	2	0	0.59	1.999974038	NON-ABERRANT	1	0.14576082	NA	NA	GAA	nonsynonymous	NA	NA	NA	NA
PW3362T1	chr3	90181954	PW2017tail	colon	sgMsh3	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.977	46	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-15331914-159911278	2	2	0	0.59	1.999974038	NON-ABERRANT	2	1	NA	NA	CGG	synonymous	NA	NA	NA	NA
PW3362T1	chr3	92022744	PW2017tail	colon	sgMsh3	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.985	71	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-15331914-159911278	2	2	0	0.59	1.999974038	NON-ABERRANT	2	1	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
PW3362T1	chr5	8718973	PW2017tail	colon	sgMsh3	8718979	CCAAAGG	-	Deletion	Mutect2;Strelka2	2	0.077	91	0	0	NA	exonic	Abcb1a	frameshift deletion	Abcb1a:NM_011076:exon20:c.2200delG:p.V734Ffs*22	5qA1	chr5-3704467-145803835	2	2	0	0.59	1.999974038	NON-ABERRANT	1	0.261013561	NA	NA	TCC	frameshift	T	7	TTTTTTT	-7
PW3362T1	chr5	120483599	PW2017tail	colon	sgMsh3	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.336	21	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3704467-145803835	2	2	0	0.59	1.999974038	NON-ABERRANT	1	1	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3362T1	chr7	134760806	PW2017tail	colon	sgMsh3	134760812	CCCCAGG	-	Deletion	Mutect2;Strelka2	2	0.109	79	0	0	NA	exonic	Dock1	frameshift deletion	Dock1:NM_001033420:exon13:c.1139delG:p.G380Vfs*3	7qF3	chr7-5079330-141858900	2	1	1	0.59	1.999974038	NON-ABERRANT	1	0.369486729	NA	NA	TCC	frameshift	T	10	TTTTTTTTTT	-7
PW3362T2	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.576	35	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-9545447-175810450	2	2	0	0.53	2	NON-ABERRANT	2	1	NA	NA	GCG	nonsynonymous	NA	NA	NA	NA
PW3362T2	chr10	33442900	PW2017tail	colon	sgMsh3	33442900	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.074	124	0	0	NA	exonic	Trdn	nonsynonymous SNV	Trdn:NM_029726:exon28:c.A1598G:p.H533R	10qA4	chr10-8786283-128912540	2	1	1	0.53	2	NON-ABERRANT	1	0.279245283	NA	NA	CAC	nonsynonymous	NA	NA	NA	NA
PW3362T2	chr11	80019674	PW2017tail	colon	sgMsh3	80019681	GCCAGGCG	-	Deletion	Mutect2;Strelka2	2	0.098	260	0	0	NA	exonic	Suz12	nonframeshift deletion	"Suz12:NM_001163018:exon8:c.855_857del:p.R285_R286delinsS,Suz12:NM_199196:exon9:c.924_926del:p.R308_R309delinsS"	11qB5	chr11-3133205-120783193	2	1	1	0.53	2	NON-ABERRANT	1	0.369811321	NA	NA	TGC	inframe	T	8	TTTTTTTT	-8
PW3362T2	chr13	21142308	PW2017tail	colon	sgMsh3	21142308	G	A	SNV	Mutect2;Strelka2;Vardict	3	0.05	150	0	0	NA	exonic	Olfr1368	synonymous SNV	Olfr1368:NM_146534:exon1:c.C748T:p.L250L	13qA2	chr13-6603014-119495179	2	1	1	0.53	2	NON-ABERRANT	1	0.188679245	NA	NA	AGT	synonymous	NA	NA	NA	NA
PW3362T2	chr13	92274780	PW2017tail	colon	sgMsh3	92274802	GAGCTCAGGAGCCTCCACGATGA	-	Deletion	Mutect2;Vardict	2	0.077	56	0	0	NA	exonic	Msh3	frameshift deletion	"Msh3:NM_001311120:exon14:c.1886_1908del:p.L629Pfs*20,Msh3:NM_010829:exon14:c.1886_1908del:p.L629Pfs*20"	13qC3	chr13-6603014-119495179	2	1	1	0.53	2	NON-ABERRANT	1	0.290566038	NA	NA	GGA	frameshift	NA	NA	NA	-23
PW3362T2	chr13	92274799	PW2017tail	colon	sgMsh3	92274799	-	G	Insertion	Strelka2;Vardict	2	0.1818	44	0	0	NA	exonic	Msh3	frameshift insertion	"Msh3:NM_001311120:exon14:c.1888_1889insC:p.I630Tfs*5,Msh3:NM_010829:exon14:c.1888_1889insC:p.I630Tfs*5"	13qC3	chr13-6603014-119495179	2	1	1	0.53	2	NON-ABERRANT	1	0.686037736	NA	NA	GAT	frameshift	NA	NA	NA	1
PW3362T2	chr18	34310851	PW2017tail	colon	sgMsh3	34310851	-	GGAGGTG	Insertion	Mutect2;Vardict	2	0.04	167	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon15:c.1719_1720insGGAGGTG:p.I577Rfs*43,Apc:NM_007462:exon15:c.1896_1897insGGAGGTG:p.I636Rfs*43,Apc:NM_001360980:exon16:c.1950_1951insGGAGGTG:p.I654Rfs*43"	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.150943396	NA	NA	GTG	frameshift	NA	NA	NA	7
PW3362T2	chr18	34312304	PW2017tail	colon	sgMsh3	34312304	-	C	Insertion	Strelka2;Vardict	2	0.0566	93	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076dupC:p.V693Rfs*1,Apc:NM_007462:exon16:c.2253dupC:p.V752Rfs*1,Apc:NM_001360980:exon17:c.2307dupC:p.V770Rfs*1"	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.213584906	NA	NA	CAC	frameshift	NA	NA	NA	1
PW3362T2	chr18	34313609	PW2017tail	colon	sgMsh3	34313609	T	-	Deletion	Mutect2;Vardict	2	0.027	200	0	0	NA	exonic	Apc	frameshift deletion	"Apc:NM_001360979:exon16:c.3380delT:p.S1128Lfs*75,Apc:NM_007462:exon16:c.3557delT:p.S1187Lfs*75,Apc:NM_001360980:exon17:c.3611delT:p.S1205Lfs*75"	18qB1	chr18-25505072-80194980	2	1	1	0.53	2	NON-ABERRANT	1	0.101886792	NA	NA	ATT	frameshift	NA	NA	NA	-1
PW3362T2	chr2	86315019	PW2017tail	colon	sgMsh3	86315019	T	C	SNV	Mutect2;Strelka2;Vardict	3	0.031	255	0	0	NA	exonic	Olfr1053	nonsynonymous SNV	Olfr1053:NM_001177857:exon1:c.A266G:p.D89G	2qD	chr2-4992200-180717794	2	1	1	0.53	2	NON-ABERRANT	1	0.116981132	NA	NA	GTC	nonsynonymous	TCAT	8	TCATTCAT	NA
PW3362T2	chr3	90181954	PW2017tail	colon	sgMsh3	90181954	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.981	56	0	0	NA	exonic	Nup210l	synonymous SNV	Nup210l:NM_029937:exon26:c.G3543A:p.T1181T	3qF1	chr3-15331914-159911278	2	1	1	0.53	2	NON-ABERRANT	1	1	NA	NA	CGG	synonymous	NA	NA	NA	NA
PW3362T2	chr3	92022744	PW2017tail	colon	sgMsh3	92022744	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.986	74	0	0	NA	exonic	Pglyrp3	nonsynonymous SNV	Pglyrp3:NM_207247:exon2:c.G216C:p.Q72H	3qF1	chr3-15331914-159911278	2	1	1	0.53	2	NON-ABERRANT	1	1	NA	NA	AGG	nonsynonymous	NA	NA	NA	NA
PW3362T2	chr4	151012649	PW2017tail	colon	sgMsh3	151012649	C	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.158	42	0	0	NA	exonic	Per3	synonymous SNV	"Per3:NM_001289877:exon17:c.G2421T:p.S807S,Per3:NM_011067:exon17:c.G2418T:p.S806S,Per3:NM_001289878:exon18:c.G1479T:p.S493S"	4qE2	chr4-15962237-156200568	2	1	1	0.53	2	NON-ABERRANT	1	0.596226415	NA	NA	CCG	synonymous	NA	NA	NA	NA
PW3362T2	chr5	8812659	PW2017tail	colon	sgMsh3	8812659	G	A	SNV	Mutect2;Vardict	2	0.039	190	0	0	NA	exonic	Abcb1b	nonsynonymous SNV	Abcb1b:NM_011075:exon6:c.G340A:p.A114T	5qA1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.147169811	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3362T2	chr5	91086808	PW2017tail	colon	sgMsh3	91086813	ACCGTG	-	Deletion	Mutect2;Vardict	2	0.037	216	0	0	NA	exonic	Ereg	nonframeshift deletion	Ereg:NM_007950:exon2:c.79_84del:p.T27_V28del	5qE1	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	1	0.139622642	NA	NA	AAC	inframe	NA	NA	NA	-6
PW3362T2	chr5	120483599	PW2017tail	colon	sgMsh3	120483599	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.583	12	0	0	NA	exonic	Sds	nonsynonymous SNV	Sds:NM_145565:exon8:c.G805A:p.A269T	5qF	chr5-3603133-150534477	2	2	0	0.53	2	NON-ABERRANT	2	1	NA	NA	CGC	nonsynonymous	NA	NA	NA	NA
PW3362T2	chrX	86747488	PW2017tail	colon	sgMsh3	86747488	G	T	SNV	Mutect2;Strelka2;Vardict	3	0.082	107	0	0	NA	exonic	Il1rapl1	stopgain	Il1rapl1:NM_001160403:exon11:c.C1845A:p.Y615X	XqC1	NA	NA	NA	NA	0.53	2	NON-ABERRANT	NA	NA	NA	NA	GGT	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr1	58481040	PW2017tail	colon	sgMsh3	58481040	T	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.523	138	0	0	NA	exonic	Orc2	nonsynonymous SNV	"Orc2:NM_001025378:exon6:c.A481C:p.K161Q,Orc2:NM_001271526:exon9:c.A625C:p.K209Q,Orc2:NM_008765:exon9:c.A625C:p.K209Q"	1qC1.3	chr1-4867294-171357963	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	2	1	1	1	TTC	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr1	134994010	PW2017tail	colon	sgMsh3	134994010	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.5	27	0	0	NA	exonic	Lgr6	nonsynonymous SNV	Lgr6:NM_001033409:exon16:c.G1426A:p.A476T	1qE4	chr1-4867294-171357963	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	2	1	1	0.999996	GCG	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr10	78443840	PW2017tail	colon	sgMsh3	78443840	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.066	63	0	0	NA	exonic	Pdxk	nonsynonymous SNV	Pdxk:NM_172134:exon9:c.G700T:p.G234W	10qC1	chr10-8756618-130453386	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.275	2	0.9999949	CCG	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr10	120111091	PW2017tail	colon	sgMsh3	120111091	C	T	SNV	Mutect2;Strelka2;Vardict	3	0.045	120	0	0	NA	exonic	Helb	nonsynonymous SNV	Helb:NM_080446:exon2:c.G316A:p.A106T	10qD2	chr10-8756618-130453386	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.1875	2	1.00E-09	GCC	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr13	92274775	PW2017tail	colon	sgMsh3	92274821	CTGAGGAGCTCAGGAGCCTCCACGATGAGTGCTCGGAGTAAGTCGGA	-	Deletion	Mutect2;Vardict	2	0.275	80	0	0	NA	exonic	Msh3	frameshift deletion	"Msh3:NM_001311120:exon14:c.1867_1913del:p.S623Pfs*18,Msh3:NM_010829:exon14:c.1867_1913del:p.S623Pfs*18"	13qC3	chr13-6603014-113346664	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	1	NA	NA	GCT	frameshift	NA	NA	NA	-47
PW3363T2	chr13	92274799	PW2017tail	colon	sgMsh3	92274799	-	T	Insertion	Mutect2;Strelka2;Vardict	3	0.37	43	0	0	NA	exonic	Msh3	frameshift insertion	"Msh3:NM_001311120:exon14:c.1888dupA:p.I630Nfs*5,Msh3:NM_010829:exon14:c.1888dupA:p.I630Nfs*5"	13qC3	chr13-6603014-113346664	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.770833333	NA	NA	GAT	frameshift	NA	NA	NA	1
PW3363T2	chr17	5975805	PW2017tail	colon	sgMsh3	5975805	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.438	175	0	0	NA	exonic	Synj2	synonymous SNV	"Synj2:NM_001113352:exon2:c.G138A:p.E46E,Synj2:NM_001113353:exon2:c.G138A:p.E46E"	17qA1	chr17-5975805-89046578	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	2	0.9125	1	1	AGA	synonymous	GAAG	14	GGAAGAGAAGGAAG	NA
PW3363T2	chr18	34312305	PW2017tail	colon	sgMsh3	34312305	-	T	Insertion	Strelka2;Vardict	2	0.2672	116	0	0	NA	exonic	Apc	frameshift insertion	"Apc:NM_001360979:exon16:c.2076_2077insT:p.V693Cfs*1,Apc:NM_007462:exon16:c.2253_2254insT:p.V752Cfs*1,Apc:NM_001360980:exon17:c.2307_2308insT:p.V770Cfs*1"	18qB1	chr18-12518888-80012618	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	1	NA	NA	ACG	frameshift	NA	NA	NA	1
PW3363T2	chr19	58673098	PW2017tail	colon	sgMsh3	58673098	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.301	71	0	0	NA	exonic	Pnlip	nonsynonymous SNV	Pnlip:NM_026925:exon4:c.C218T:p.A73V	19qD2	chr19-3279444-59274607	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.627083333	1	0.9995316	GCA	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr2	54857961	PW2017tail	colon	sgMsh3	54857961	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.213	89	0	0	NA	exonic	Galnt13	nonsynonymous SNV	Galnt13:NM_173030:exon7:c.G853A:p.V285I	2qC1.1	chr2-4992200-180281766	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.8875	1	1.00E-09	TGT	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr2	111873794	PW2017tail	colon	sgMsh3	111873794	G	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.207	55	0	0	NA	exonic	Olfr1305	synonymous SNV	Olfr1305:NM_146401:exon1:c.C60A:p.S20S	2qE3	chr2-4992200-180281766	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.8625	1	2.83E-08	AGG	synonymous	NA	NA	NA	NA
PW3363T2	chr3	96170403	PW2017tail	colon	sgMsh3	96170403	A	G	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.31	109	0	0	NA	exonic	Mtmr11	synonymous SNV	Mtmr11:NM_181409:exon16:c.A1713G:p.R571R	3qF2.1	chr3-15331914-127013177	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.645833333	1	0.9999973	GAG	synonymous	NA	NA	NA	NA
PW3363T2	chr5	117895848	PW2017tail	colon	sgMsh3	117895848	C	A	SNV	Mutect2;Strelka2;Vardict	3	0.111	37	0	0	NA	exonic	Nos1	stopgain	Nos1:NM_008712:exon4:c.C1034A:p.S345X	5qF	chr5-3582305-149696570	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.4625	2	0.6507318	TCA	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr6	85947689	PW2017tail	colon	sgMsh3	85947689	G	C	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.479	73	0	0	NA	exonic	Dusp11	nonsynonymous SNV	Dusp11:NM_028099:exon9:c.C882G:p.F294L	6qC3	chr6-3994124-136921993	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.997916667	1	1.00E-09	AGA	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr7	46298537	PW2017tail	colon	sgMsh3	46298537	C	T	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.462	80	0	0	NA	exonic	Otog	nonsynonymous SNV	Otog:NM_013624:exon42:c.C6961T:p.R2321W	7qB3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	2	0.9625	1	1.00E-09	CCG	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr7	85221855	PW2017tail	colon	sgMsh3	85221855	G	A	SNV	Mutect2;Strelka2;MuSe;Vardict	4	0.194	371	0	0	NA	exonic	Vmn2r68	nonsynonymous SNV	Vmn2r68:NM_001105181:exon6:c.C2219T:p.A740V	7qD3	chr7-4477867-141858900	2	2	0	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.808333333	1	1	GGC	nonsynonymous	NA	NA	NA	NA
PW3363T2	chr9	72618728	PW2017tail	colon	sgMsh3	72618728	A	G	SNV	Mutect2;Strelka2;Vardict	3	0.043	147	0	0	NA	exonic	Rfx7	nonsynonymous SNV	Rfx7:NM_001033536:exon9:c.A3199G:p.N1067D	9qD	chr9-7282188-123664738	2	1	1	0.48	2	NON-ABERRANT;EXCESSIVE LOH	1	0.179166667	2	1	TAA	nonsynonymous	NA	NA	NA	NA